BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780202|ref|YP_003064615.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter asiaticus str. psy62] (211 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done Results from round 1 >gi|254780202|ref|YP_003064615.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter asiaticus str. psy62] gi|254039879|gb|ACT56675.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter asiaticus str. psy62] Length = 211 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 211/211 (100%), Positives = 211/211 (100%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT Sbjct: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG Sbjct: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF Sbjct: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR Sbjct: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 >gi|315122629|ref|YP_004063118.1| hypothetical protein CKC_04405 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496031|gb|ADR52630.1| hypothetical protein CKC_04405 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 211 Score = 366 bits (939), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 172/211 (81%), Positives = 188/211 (89%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MKLYS+KEIFLTLQGEG GRVAVFCRFSGCNLWSGRE+DRL AQCRFCDTDFVG +GT Sbjct: 1 MKLYSVKEIFLTLQGEGAQVGRVAVFCRFSGCNLWSGREKDRLFAQCRFCDTDFVGTKGT 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GGRY+ +QLADLI WI EKE RYCVLTGGEPLLQVD LI+ALNKR F I+VETNG Sbjct: 61 MGGRYSAEQLADLIASAWIPEEKEERYCVLTGGEPLLQVDSALIKALNKRNFTISVETNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 TI+PP+GIDWICVSPKAGCDLK+K GQELKLVFPQV+ PENYI FDF+ FSLQPMDG F Sbjct: 121 TIKPPEGIDWICVSPKAGCDLKVKNGQELKLVFPQVDAPPENYIDFDFDIFSLQPMDGSF 180 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 L+ENTNLAISYCF+NPKWR+S+QTHKFIGIR Sbjct: 181 LKENTNLAISYCFKNPKWRVSLQTHKFIGIR 211 >gi|92118709|ref|YP_578438.1| hypothetical protein Nham_3243 [Nitrobacter hamburgensis X14] gi|91801603|gb|ABE63978.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 210 Score = 306 bits (783), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 141/209 (67%), Positives = 164/209 (78%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG+ GT+GG Sbjct: 3 YAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWSGREEDRTSAICRFCDTDFVGMDGTRGG 62 Query: 64 RYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY D+LAD + QW TG RY VLTGGEPLLQVD + AL+ RGFEI +ETNGTI Sbjct: 63 RYAAADELADTVAAQW-TGSAPHRYAVLTGGEPLLQVDKAFVDALHARGFEIGIETNGTI 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 PP GIDW+CVSPKAG DL++ G ELKLV+PQ PE++ FERFSLQPMDGP Sbjct: 122 VPPDGIDWLCVSPKAGADLRVTKGHELKLVYPQAGARPEDFKDLAFERFSLQPMDGPDAA 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT AI YC ++P+WRLS+QTHK +GIR Sbjct: 182 DNTARAIDYCMRHPQWRLSLQTHKTLGIR 210 >gi|75676803|ref|YP_319224.1| hypothetical protein Nwi_2619 [Nitrobacter winogradskyi Nb-255] gi|74421673|gb|ABA05872.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 210 Score = 305 bits (781), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 140/209 (66%), Positives = 163/209 (77%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR AVFCRFSGCNLWSGRE+DR SA CRFCDTDFVG GT GG Sbjct: 3 YAVKEIFLTLQGEGAHAGRAAVFCRFSGCNLWSGREEDRASATCRFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY + D LAD + QW G RY VLTGGEPLLQVD + AL+ RGFEI +ETNGT+ Sbjct: 63 RYASADALADTVAGQW-AGPAAHRYAVLTGGEPLLQVDKAFVDALHARGFEIGIETNGTL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 PP GIDW+CVSPKAG DL+I+ G ELKLV+PQ + PE++ F+RFSLQPMDGP Sbjct: 122 APPDGIDWLCVSPKAGADLRIRRGHELKLVYPQADARPEDFADLAFDRFSLQPMDGPDAA 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 ENT A+ YC ++P+WRLS+QTHK +GIR Sbjct: 182 ENTARAVDYCLRHPQWRLSLQTHKTLGIR 210 >gi|192289792|ref|YP_001990397.1| hypothetical protein Rpal_1382 [Rhodopseudomonas palustris TIE-1] gi|192283541|gb|ACE99921.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 210 Score = 302 bits (773), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 139/209 (66%), Positives = 167/209 (79%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR AVFCRF+GCNLW+GREQDR A C+FCDTDF+G GT GG Sbjct: 3 YAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWTGREQDRDQATCKFCDTDFIGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY + + LAD I EQW+ G+ RY V+TGGEPLLQ+D LI AL+ RGF I VETNGTI Sbjct: 63 RYASAEHLADTIAEQWV-GDARDRYVVITGGEPLLQLDGELITALHARGFAIGVETNGTI 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 EPP GIDW+CVSPKAG +L+I+ G ELKLV+PQ + PE + +FERFSLQPMDGP + Sbjct: 122 EPPAGIDWLCVSPKAGAELRIRRGDELKLVYPQPDAMPEEFAALEFERFSLQPMDGPDRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT AI+YC ++P+WRLS+QTHK GIR Sbjct: 182 DNTTRAIAYCLKHPQWRLSLQTHKITGIR 210 >gi|85714274|ref|ZP_01045262.1| hypothetical protein NB311A_15022 [Nitrobacter sp. Nb-311A] gi|85698721|gb|EAQ36590.1| hypothetical protein NB311A_15022 [Nitrobacter sp. Nb-311A] Length = 210 Score = 301 bits (771), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 142/209 (67%), Positives = 162/209 (77%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y+IKE+FLTLQGEG HAGR AVFCRFSGCNLWSGRE+DR SA C FCDTDFVG GT GG Sbjct: 3 YAIKEVFLTLQGEGAHAGRAAVFCRFSGCNLWSGREKDRASATCAFCDTDFVGTDGTLGG 62 Query: 64 RYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY+ D LA+ + QWI G RY VLTGGEPLLQVD I AL+ R FEI +ETNGTI Sbjct: 63 RYDTADALAETVAAQWI-GPAAHRYAVLTGGEPLLQVDKAFIDALHARRFEIGIETNGTI 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 PP GIDW+CVSPKAG DL++ G ELKLV+PQ N+ PE++ FERFSLQPMDGP Sbjct: 122 VPPDGIDWLCVSPKAGADLRVTKGHELKLVYPQENIRPEDFKDLAFERFSLQPMDGPDAA 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT AI YC ++P+WRLS+QTHK IGIR Sbjct: 182 DNTARAIDYCLRHPQWRLSLQTHKTIGIR 210 >gi|39934265|ref|NP_946541.1| hypothetical protein RPA1190 [Rhodopseudomonas palustris CGA009] gi|39648113|emb|CAE26633.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 210 Score = 301 bits (771), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 139/209 (66%), Positives = 167/209 (79%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR AVFCRF+GCNLW+GREQDR A C+FCDTDF+G GT GG Sbjct: 3 YAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWTGREQDRDQATCKFCDTDFIGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY + + LAD I EQW+ G+ RY V+TGGEPLLQ+D LI AL+ RGF I VETNGTI Sbjct: 63 RYASAEHLADTIAEQWV-GDARDRYVVITGGEPLLQLDGELITALHARGFAIGVETNGTI 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 EPP GIDW+CVSPKAG +L+I+ G ELKLV+PQ + PE + +FERFSLQPMDGP + Sbjct: 122 EPPVGIDWLCVSPKAGAELRIRRGDELKLVYPQPDAMPEEFAALEFERFSLQPMDGPERD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT AI+YC ++P+WRLS+QTHK GIR Sbjct: 182 DNTTRAIAYCLKHPQWRLSLQTHKITGIR 210 >gi|91975780|ref|YP_568439.1| hypothetical protein RPD_1300 [Rhodopseudomonas palustris BisB5] gi|91682236|gb|ABE38538.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 210 Score = 301 bits (771), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 142/209 (67%), Positives = 165/209 (78%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR +VFCRF+GCNLW+GREQDR A CRFCDTDFVG GT GG Sbjct: 3 YAVKEIFLTLQGEGAHAGRASVFCRFAGCNLWTGREQDRDQAACRFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY + +LA I QW E + RY V+TGGEPLLQ+D LI AL K+GF I VETNGTI Sbjct: 63 RYTDAGELAGAIAAQWAGAELD-RYVVITGGEPLLQLDAELIAALQKQGFAIGVETNGTI 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 EPP GIDW+CVSPKAG +L++K G ELKLV+PQ PE + DFERFSLQPMDGP + Sbjct: 122 EPPPGIDWLCVSPKAGAELRVKRGNELKLVYPQPGAMPEQFAALDFERFSLQPMDGPARD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 E+T LAI+YC ++P+WRLSVQTHK IGIR Sbjct: 182 EHTRLAIAYCLRHPQWRLSVQTHKTIGIR 210 >gi|316932735|ref|YP_004107717.1| Radical SAM domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315600449|gb|ADU42984.1| Radical SAM domain protein [Rhodopseudomonas palustris DX-1] Length = 210 Score = 300 bits (768), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 141/209 (67%), Positives = 164/209 (78%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR AVFCRF+GCNLW+GREQDR A C+FCDTDF+G GT GG Sbjct: 3 YAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWTGREQDRDEATCKFCDTDFIGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY + LAD I EQW TG+ RY V+TGGEPLLQ+D LI AL+ RGF I VETNGTI Sbjct: 63 RYAGAELLADTIAEQW-TGDPRKRYVVITGGEPLLQLDGELIAALHTRGFAIGVETNGTI 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 EPP GIDW+CVSPKAG +L+I+ G ELKLV+PQ PE + DFERFSLQPMDGP + Sbjct: 122 EPPDGIDWLCVSPKAGAELRIRRGDELKLVYPQPGAMPEQFAALDFERFSLQPMDGPERD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT AI+YC +P+WRLS+QTHK GIR Sbjct: 182 DNTTRAIAYCLMHPQWRLSLQTHKITGIR 210 >gi|86748323|ref|YP_484819.1| hypothetical protein RPB_1198 [Rhodopseudomonas palustris HaA2] gi|86571351|gb|ABD05908.1| Radical SAM [Rhodopseudomonas palustris HaA2] Length = 210 Score = 299 bits (765), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 139/209 (66%), Positives = 166/209 (79%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR +VFCRF+GCNLW+GREQDR A C+FCDTDFVG GT GG Sbjct: 3 YAVKEIFLTLQGEGAHAGRASVFCRFAGCNLWTGREQDRHDAVCQFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY + +LAD I QW+ G RY V+TGGEPLLQ+D LI AL+K+GFE+ VETNGTI Sbjct: 63 RYGDAGKLADTIAAQWV-GADTDRYVVITGGEPLLQLDAELIDALHKQGFEVGVETNGTI 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 EPP GIDW+CVSPKAG ++++ G ELKLV+PQ + PE + DFERFSLQPMDGP + Sbjct: 122 EPPAGIDWLCVSPKAGTQIRVQCGNELKLVYPQPDAMPEQFTSLDFERFSLQPMDGPDRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT AI YC ++P+WRLSVQTHK IGIR Sbjct: 182 DNTRRAIDYCLRHPQWRLSVQTHKVIGIR 210 >gi|27377594|ref|NP_769123.1| hypothetical protein bll2483 [Bradyrhizobium japonicum USDA 110] gi|27350739|dbj|BAC47748.1| bll2483 [Bradyrhizobium japonicum USDA 110] Length = 210 Score = 295 bits (756), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 140/209 (66%), Positives = 161/209 (77%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR +VFCRF+GCNLWSGRE DR A C+FCDTDFVG GT GG Sbjct: 3 YAVKEIFLTLQGEGAHAGRASVFCRFAGCNLWSGREADRQDATCKFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY + +LAD I QW T + RY VLTGGEPLLQVD LI AL+ RGFEI VETNGTI Sbjct: 63 RYASAVELADTIAAQW-TASNDNRYVVLTGGEPLLQVDDALIDALHARGFEIGVETNGTI 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P G+DWICVSPK G +L ++ G ELKLV+PQ +PE + G FERFSLQPMDGP + Sbjct: 122 AAPDGLDWICVSPKGGSELVLRRGHELKLVYPQALAAPETFEGLAFERFSLQPMDGPEVA 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 ENT AI YC ++P+WRLSVQTHK +GIR Sbjct: 182 ENTARAIDYCLRHPQWRLSVQTHKSLGIR 210 >gi|209886114|ref|YP_002289971.1| radical SAM [Oligotropha carboxidovorans OM5] gi|209874310|gb|ACI94106.1| radical SAM [Oligotropha carboxidovorans OM5] Length = 210 Score = 292 bits (748), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 139/209 (66%), Positives = 158/209 (75%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR AVFCRF+GCNLW+GREQDR A CRFCDTDFVG GT GG Sbjct: 3 YAVKEIFLTLQGEGAHAGRTAVFCRFAGCNLWTGREQDRADATCRFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY D LAD I W G R+ VLTGGEPLLQ+DV LI+AL+ R F IAVETNGT+ Sbjct: 63 RYATADALADQIAATWGEGTTH-RFVVLTGGEPLLQIDVELIEALHARHFMIAVETNGTL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P G+DWICVSPKA +L I+ G ELKLV+PQ +PE+Y F FSLQPMDGP L Sbjct: 122 PAPPGLDWICVSPKADTELAIRQGHELKLVYPQAENTPEDYAALAFAHFSLQPMDGPDLA 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT AI YC ++P+WRLSVQTHK IGIR Sbjct: 182 QNTERAIDYCLRHPQWRLSVQTHKTIGIR 210 >gi|115522971|ref|YP_779882.1| hypothetical protein RPE_0946 [Rhodopseudomonas palustris BisA53] gi|115516918|gb|ABJ04902.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 210 Score = 286 bits (731), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 136/209 (65%), Positives = 156/209 (74%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT GG Sbjct: 3 YAVKEIFLTLQGEGAHAGRAAVFCRFTGCNLWSGREDDRAAATCQFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY + LA+ I QW G+ RY VLTGGEPLLQVD LI+AL+ RGF I VETNGT Sbjct: 63 RYLSASDLAEAIAAQW-RGDAASRYVVLTGGEPLLQVDDALIEALHDRGFSIGVETNGTQ 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 PP+ IDW+CVSPKAG +L ++ G ELKLV+PQ PE + FERFSLQPMDGP Sbjct: 122 MPPEDIDWVCVSPKAGTELTLRYGDELKLVYPQEGAEPELFEALAFERFSLQPMDGPDAA 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 N AI YC +P+WRLSVQTHK +GIR Sbjct: 182 ANIQAAIDYCLSHPQWRLSVQTHKTLGIR 210 >gi|146339025|ref|YP_001204073.1| hypothetical protein BRADO1974 [Bradyrhizobium sp. ORS278] gi|146191831|emb|CAL75836.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278] Length = 210 Score = 283 bits (723), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 131/208 (62%), Positives = 152/208 (73%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF+TLQGEG AGR AVFCRF+GCNLWSGRE DR +A CRFCDTDFVG+ GT GG Sbjct: 3 YAVKEIFMTLQGEGAQAGRAAVFCRFAGCNLWSGREADRATATCRFCDTDFVGVDGTLGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 RY TG RY +LTGGEPLLQVD LI AL+ +GF + +ETNGT+ Sbjct: 63 RYETAAALAEAIAGQWTGGAADRYTILTGGEPLLQVDADLIAALHAQGFAVGIETNGTLI 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 PP GIDWICVSPKAG +LK++ G ELKLV+PQ P+ + G FERFSLQPMDGP Sbjct: 123 PPDGIDWICVSPKAGAELKLRHGHELKLVYPQAGTEPDKFEGLAFERFSLQPMDGPDAAA 182 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT AI YC + P+WRLS+QTHK IGIR Sbjct: 183 NTARAIHYCQRRPQWRLSLQTHKMIGIR 210 >gi|154253588|ref|YP_001414412.1| hypothetical protein Plav_3149 [Parvibaculum lavamentivorans DS-1] gi|154157538|gb|ABS64755.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1] Length = 210 Score = 283 bits (723), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 135/209 (64%), Positives = 155/209 (74%), Gaps = 1/209 (0%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +YS+KEIF TLQGEG +AGR +VFCRFSGCNLWSGRE+DR A C FCDTDFVG G G Sbjct: 1 MYSVKEIFYTLQGEGANAGRPSVFCRFSGCNLWSGREEDRADAVCTFCDTDFVGTNGEGG 60 Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 G++ +V LAD IE+ W +G R+ V TGGEPLLQ+D PLI AL+ RGFEIAVETNGT Sbjct: 61 GKFRDVAALADAIEKTWESGAAHNRFVVCTGGEPLLQLDAPLIAALHSRGFEIAVETNGT 120 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 I P+GIDWICVSPKA +LK G ELKLV+PQ PE + DF F LQPMDG Sbjct: 121 IVAPEGIDWICVSPKADAELKQTSGHELKLVYPQHKAQPERFEQLDFRYFYLQPMDGADA 180 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 EENT A +YC +PKWRLS+QTHK IGI Sbjct: 181 EENTRAATAYCLAHPKWRLSLQTHKLIGI 209 >gi|299134645|ref|ZP_07027837.1| Radical SAM domain protein [Afipia sp. 1NLS2] gi|298590455|gb|EFI50658.1| Radical SAM domain protein [Afipia sp. 1NLS2] Length = 210 Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 135/209 (64%), Positives = 157/209 (75%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG AGR AVFCRF+GCNLWSGREQDR A C+FCDTDFVG GT GG Sbjct: 3 YAVKEIFLTLQGEGMQAGRPAVFCRFAGCNLWSGREQDRAEAVCQFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY D LA+ I W + R+ VLTGGEP+LQ+D LI AL+ RGF IAVETNGT+ Sbjct: 63 RYATADDLAERIAATWGPDSRH-RFVVLTGGEPMLQIDDALIAALHARGFMIAVETNGTL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P G+DWICVSPKA +L I+ G ELKLV+PQ +PE+Y F+ F LQPMDGP LE Sbjct: 122 PAPPGLDWICVSPKADTELAIRQGHELKLVYPQRQNAPEDYTALAFQHFLLQPMDGPDLE 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT AI YC ++P+WRLSVQTHK IGIR Sbjct: 182 QNTARAIDYCLRHPQWRLSVQTHKTIGIR 210 >gi|311106693|ref|YP_003979546.1| radical SAM superfamily protein 3 [Achromobacter xylosoxidans A8] gi|310761382|gb|ADP16831.1| radical SAM superfamily protein 3 [Achromobacter xylosoxidans A8] Length = 226 Score = 277 bits (709), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 128/208 (61%), Positives = 152/208 (73%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS KEIF TLQGEG HAGR AVFCRF+GCNLW+GRE DR SA C FCDTDF+G G GG Sbjct: 19 YSAKEIFKTLQGEGAHAGRAAVFCRFAGCNLWTGRESDRASAACTFCDTDFIGTDGEGGG 78 Query: 64 RYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ +L AD I W G + RY V TGGEPLLQ+D PL+ A++ RGF IA+ETNGTI Sbjct: 79 KFATPELLADAIAAAWGPGATD-RYVVFTGGEPLLQLDAPLLTAVHARGFTIAIETNGTI 137 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 +PP GIDWICVSPK + ++ G ELKLV+PQ N PE + DF+ F LQPMDGP Sbjct: 138 KPPAGIDWICVSPKGTAPVVLERGDELKLVYPQANARPEAFAHLDFDHFFLQPMDGPARA 197 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A+ YC Q+P+WRLS+QTHK+IGI Sbjct: 198 ANTEQAVQYCMQHPQWRLSLQTHKYIGI 225 >gi|16127389|ref|NP_421953.1| hypothetical protein CC_3159 [Caulobacter crescentus CB15] gi|221236197|ref|YP_002518634.1| queuosine biosynthesis protein QueE [Caulobacter crescentus NA1000] gi|13424829|gb|AAK25121.1| conserved hypothetical protein [Caulobacter crescentus CB15] gi|220965370|gb|ACL96726.1| queuosine biosynthesis protein QueE [Caulobacter crescentus NA1000] Length = 210 Score = 277 bits (709), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 132/208 (63%), Positives = 153/208 (73%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIFLTLQGEGG AG+ AVFCRFSGCNLWSGREQDR A C FCDTDFVG G GG Sbjct: 3 YSVKEIFLTLQGEGGQAGKAAVFCRFSGCNLWSGREQDRAKAVCTFCDTDFVGTDGENGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + LA +E QW TG + R V TGGEP LQ+D I AL+ RGF+IAVETNGTI Sbjct: 63 KFATAEDLAAAVEAQW-TGGPDDRLVVCTGGEPFLQLDDAAIAALHARGFQIAVETNGTI 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P G+DWICVSPKA + GQELKLVFPQ PE + DFERF LQPMDGP + Sbjct: 122 TAPAGVDWICVSPKADAPVVQTSGQELKLVFPQEKAMPERFAALDFERFYLQPMDGPDRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LA++YC +P+WRLSVQTHK++G+ Sbjct: 182 ANTQLAVAYCLSHPQWRLSVQTHKYLGL 209 >gi|148261740|ref|YP_001235867.1| organic radical activating-like protein [Acidiphilium cryptum JF-5] gi|146403421|gb|ABQ31948.1| Organic radical activating enzymes-like protein [Acidiphilium cryptum JF-5] Length = 211 Score = 277 bits (708), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 130/208 (62%), Positives = 153/208 (73%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG G GG Sbjct: 3 YSVKEIFPTLQGEGRNAGRAAVFCRFAGCNLWSGREEDRASATCRFCDTDFVGTDGPGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ + LA I+ W V TGGEPLLQ+D PLI+A++ GFEIAVETNGTI Sbjct: 63 RFADAAGLARAIQAAWSAACTRDALVVFTGGEPLLQLDAPLIEAVHDAGFEIAVETNGTI 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 EPP GIDW+CVSPK G +L ++ G ELKLV+PQ +PE + G DF F LQPMDGP Sbjct: 123 EPPPGIDWLCVSPKEGAELVVRQGSELKLVYPQKEATPERFAGLDFAHFLLQPMDGPDRA 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT AI YC +P+WRLS+QTHK++GI Sbjct: 183 ANTRAAIEYCLTHPQWRLSMQTHKYLGI 210 >gi|326405234|ref|YP_004285316.1| hypothetical protein ACMV_30870 [Acidiphilium multivorum AIU301] gi|325052096|dbj|BAJ82434.1| hypothetical protein ACMV_30870 [Acidiphilium multivorum AIU301] Length = 211 Score = 276 bits (707), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 130/208 (62%), Positives = 152/208 (73%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG G GG Sbjct: 3 YSVKEIFPTLQGEGRNAGRAAVFCRFAGCNLWSGREEDRASATCRFCDTDFVGTDGPGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ + LA I+ W V TGGEPLLQ+D PLI+A++ GFEIAVETNGTI Sbjct: 63 RFADAAGLARAIQAAWPAACTRDALVVFTGGEPLLQLDAPLIEAVHDAGFEIAVETNGTI 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 EPP GIDW+CVSPK G +L ++ G ELKLV+PQ +PE + G DF F LQPMDGP Sbjct: 123 EPPPGIDWLCVSPKEGAELVVRQGSELKLVYPQKEATPERFAGLDFAHFLLQPMDGPDRA 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT AI YC +P+WRLS QTHK++GI Sbjct: 183 ANTRAAIEYCLTHPQWRLSTQTHKYLGI 210 >gi|148253795|ref|YP_001238380.1| hypothetical protein BBta_2298 [Bradyrhizobium sp. BTAi1] gi|146405968|gb|ABQ34474.1| hypothetical protein BBta_2298 [Bradyrhizobium sp. BTAi1] Length = 210 Score = 276 bits (705), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 130/208 (62%), Positives = 150/208 (72%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF+TLQGEG AGR AVFCRF+GCNLWSGRE DR +A CRFCDTDFVG GT GG Sbjct: 3 YAVKEIFMTLQGEGALAGRAAVFCRFAGCNLWSGREADRATATCRFCDTDFVGTDGTFGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 RY+ TG RY +LTGGEPLLQVD LI AL+ R F + +ETNGT+ Sbjct: 63 RYDDAAALAAAIAGQWTGGAADRYTILTGGEPLLQVDADLIAALHARDFAVGIETNGTLI 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 PP GIDWICVSPKAG +LK++ G ELKLV+PQ PE + F+RFSLQPMDGP Sbjct: 123 PPDGIDWICVSPKAGAELKLQQGHELKLVYPQDGAEPERFADLAFQRFSLQPMDGPEAAA 182 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT AI YC +P+WRLS+QTHK IGIR Sbjct: 183 NTARAIQYCQHHPQWRLSLQTHKMIGIR 210 >gi|167645047|ref|YP_001682710.1| hypothetical protein Caul_1082 [Caulobacter sp. K31] gi|167347477|gb|ABZ70212.1| conserved hypothetical protein [Caulobacter sp. K31] Length = 210 Score = 275 bits (704), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 132/208 (63%), Positives = 153/208 (73%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIFLTLQGEGG AG+ AVFCRF+GCNLW+GREQDR A C FCDTDFVG G GG Sbjct: 3 YSVKEIFLTLQGEGGQAGKAAVFCRFAGCNLWTGREQDRRKAVCAFCDTDFVGTDGEGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ D L D +E W TG R V TGGEPLLQ+D PLI A + RGF IAVETNGT+ Sbjct: 63 KFVTPDALVDAVEAAW-TGGPGDRLVVCTGGEPLLQLDAPLIAAFHARGFMIAVETNGTV 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+GIDWICVSPKA + GQELKLV+PQ PE + DFERF LQPMDGP E Sbjct: 122 AAPEGIDWICVSPKADAPVVQTRGQELKLVYPQDKALPERFAALDFERFYLQPMDGPDRE 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LA++YC +P+WRLSVQTHK++G+ Sbjct: 182 RNTQLAVAYCLSHPQWRLSVQTHKYLGL 209 >gi|182679140|ref|YP_001833286.1| radical SAM domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182635023|gb|ACB95797.1| Radical SAM domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 211 Score = 275 bits (703), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 133/211 (63%), Positives = 151/211 (71%), Gaps = 2/211 (0%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y++KEIFLTLQGEG AGR AVFCRF+GCNLWSGRE DR A CRFCDTDFVG+ G Sbjct: 1 MSHYAVKEIFLTLQGEGAQAGRPAVFCRFTGCNLWSGREADRAQAICRFCDTDFVGMDGL 60 Query: 61 KGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GGR+ + LAD IE W G RY V TGGEPLLQ+D LI+ ++ RGF IAVETN Sbjct: 61 GGGRFESASSLADAIETAWTAGPAH-RYVVFTGGEPLLQLDETLIKEIHARGFTIAVETN 119 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GTI PP G+DWICVSPKAG LKI G ELKLVFPQ + PE + F+ F LQPMD Sbjct: 120 GTIAPPPGLDWICVSPKAGAPLKITQGSELKLVFPQEALDPEEFRALSFQHFWLQPMDNA 179 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 L NT A +YC +P+WRLS+QTHK IGI Sbjct: 180 NLARNTTEATAYCLAHPQWRLSLQTHKLIGI 210 >gi|295688231|ref|YP_003591924.1| radical SAM domain-containing protein [Caulobacter segnis ATCC 21756] gi|295430134|gb|ADG09306.1| Radical SAM domain protein [Caulobacter segnis ATCC 21756] Length = 210 Score = 274 bits (700), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 131/208 (62%), Positives = 153/208 (73%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIFLTLQGEGG AG+ AVFCRFSGCNLWSGREQDR A C FCDTDFVG G GG Sbjct: 3 YSVKEIFLTLQGEGGQAGKAAVFCRFSGCNLWSGREQDRAKAVCTFCDTDFVGTDGENGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ D LA +E QW TG + R V TGGEP LQ+D I AL+ RGF+IAVE+NGTI Sbjct: 63 KFATADDLAAAVEAQW-TGGPDDRLVVCTGGEPFLQLDEAAIAALHARGFQIAVESNGTI 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + P IDWIC+SPKA + GQELKLVFPQ PE + DFERF LQPMDGP + Sbjct: 122 QAPPEIDWICISPKADAPVVQTSGQELKLVFPQEKAMPERFADLDFERFYLQPMDGPDRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LA++YC +P+WRLSVQTHK++G+ Sbjct: 182 RNTQLAVAYCLSHPQWRLSVQTHKYLGL 209 >gi|103488122|ref|YP_617683.1| hypothetical protein Sala_2645 [Sphingopyxis alaskensis RB2256] gi|98978199|gb|ABF54350.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256] Length = 210 Score = 274 bits (700), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 130/209 (62%), Positives = 154/209 (73%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG GR AVFCRF+GCNLWSGRE DR ++ C FCDTDFVG+ G+ GG Sbjct: 3 YAVKEIFKTLQGEGAQMGRAAVFCRFAGCNLWSGREGDRTTSVCTFCDTDFVGMDGSGGG 62 Query: 64 RYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ DQ LAD IE +W G + RY VLTGGEPLLQVD L+ AL+ RGFEIA+ETNGT Sbjct: 63 RFADDQALADAIESEW-AGARADRYVVLTGGEPLLQVDQDLVDALHTRGFEIAIETNGTQ 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+G+DWICVSPKA +L + G ELKLV+PQ +PE + FE F LQPMD P Sbjct: 122 PAPRGLDWICVSPKADAELVLLAGNELKLVYPQEKAAPERFEHLAFEHFFLQPMDSPTAA 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 N AI+YC QNP+WRLS+Q+HK IGIR Sbjct: 182 ANLEAAITYCTQNPRWRLSLQSHKMIGIR 210 >gi|90422441|ref|YP_530811.1| hypothetical protein RPC_0922 [Rhodopseudomonas palustris BisB18] gi|90104455|gb|ABD86492.1| Radical SAM [Rhodopseudomonas palustris BisB18] Length = 210 Score = 273 bits (697), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 134/209 (64%), Positives = 160/209 (76%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR AVFCRF+GCNLWSGR+ DR +A+C+FCDTDFVG GT G Sbjct: 3 YAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWSGRDSDRETAKCQFCDTDFVGTDGTLGD 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY + +LA +I QW TG+ + RY VLTGGEPLLQ+D LI AL+ RGF + VETNGT+ Sbjct: 63 RYASAAELAAVIASQW-TGDDKFRYVVLTGGEPLLQLDAKLIAALHGRGFGVGVETNGTL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 PP GIDW+CVSPKAG DL ++ G ELKLV+PQ PE + FERFSLQPMDG Sbjct: 122 APPDGIDWLCVSPKAGADLVLRRGNELKLVYPQRGALPELFADLGFERFSLQPMDGAEAA 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT AI+YC +P+WRLS+QTHK +GIR Sbjct: 182 ANTASAIAYCLAHPQWRLSLQTHKTLGIR 210 >gi|302383449|ref|YP_003819272.1| hypothetical protein Bresu_2339 [Brevundimonas subvibrioides ATCC 15264] gi|302194077|gb|ADL01649.1| conserved hypothetical protein [Brevundimonas subvibrioides ATCC 15264] Length = 211 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 128/209 (61%), Positives = 152/209 (72%), Gaps = 1/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KE FLT+QGEGG AGR AVF RF+GCNLWSGREQDR A C FCDT+FVG G GG Sbjct: 3 YSVKETFLTVQGEGGQAGRPAVFLRFAGCNLWSGREQDRAKAVCSFCDTEFVGTDGDGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + L+D + WI + + + V TGGEPLLQ+D PLI+AL+ RGF+IAVETNGT+ Sbjct: 63 KFADAGVLSDHVASMWIGRDGDPKLVVCTGGEPLLQLDAPLIEALHARGFDIAVETNGTL 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDW+CVSPKA + GQELKLVFPQ P + DFERF LQPMDGP Sbjct: 123 AAPTGIDWVCVSPKAAAPVVQTSGQELKLVFPQALAMPHRFEALDFERFWLQPMDGPDQA 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT A+ YC +NPKWRLSVQTHK+IG+R Sbjct: 183 ANTAAALDYCLKNPKWRLSVQTHKYIGVR 211 >gi|154247119|ref|YP_001418077.1| hypothetical protein Xaut_3190 [Xanthobacter autotrophicus Py2] gi|154161204|gb|ABS68420.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2] Length = 211 Score = 271 bits (694), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 127/208 (61%), Positives = 150/208 (72%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE+FLTLQGEG AGR AVFCRF+GCNLWSGRE DR AQCRFCDTDFVG+ G GG Sbjct: 3 YAVKEMFLTLQGEGAQAGRAAVFCRFAGCNLWSGREDDRAEAQCRFCDTDFVGMDGEGGG 62 Query: 64 RYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ W + E R+ V TGGEPLLQ+D L+ A++ GFEIAVETNGT+ Sbjct: 63 RFADAATLAAAIAATWGSAAPERRFVVFTGGEPLLQLDTALVDAVHALGFEIAVETNGTV 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + P GIDWIC+SPKAG DLK+ G ELKLVFPQ ++PE G DF F LQPMDGP Sbjct: 123 DAPGGIDWICMSPKAGTDLKVTRGHELKLVFPQPGLAPEGLAGLDFTHFFLQPMDGPDRL 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A++YC +P+WRLS+QTHK IGI Sbjct: 183 RNTEAAVAYCLSHPRWRLSLQTHKMIGI 210 >gi|293605772|ref|ZP_06688146.1| GntS protein [Achromobacter piechaudii ATCC 43553] gi|292815821|gb|EFF74928.1| GntS protein [Achromobacter piechaudii ATCC 43553] Length = 210 Score = 271 bits (693), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 126/208 (60%), Positives = 150/208 (72%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y+ KEIF TLQGEG HAGR AVFCRF+GCNLW+GRE DR SA C FCDTDF+G G GG Sbjct: 3 YTAKEIFKTLQGEGAHAGRAAVFCRFAGCNLWTGRESDRASAACTFCDTDFIGTDGEGGG 62 Query: 64 RYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ D LAD I W + + RY V TGGEPLLQ+D PL+ A++ RGF +A+ETNGT+ Sbjct: 63 KFATPDLLADTIAATW-GPDTQDRYVVFTGGEPLLQLDAPLLTAIHARGFTVAIETNGTV 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + P GIDWICVSPK + I G ELKLV+PQ N PE + DFE F LQPMDGP Sbjct: 122 KAPAGIDWICVSPKGTAPIVIDRGDELKLVYPQHNALPETFAHLDFEHFFLQPMDGPARV 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A+ YC Q+P+WRLS+QTHK+IGI Sbjct: 182 ANTEQAVQYCMQHPQWRLSLQTHKYIGI 209 >gi|254418815|ref|ZP_05032539.1| hypothetical protein BBAL3_1125 [Brevundimonas sp. BAL3] gi|196184992|gb|EDX79968.1| hypothetical protein BBAL3_1125 [Brevundimonas sp. BAL3] Length = 211 Score = 268 bits (686), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 130/209 (62%), Positives = 150/209 (71%), Gaps = 1/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS KE+FLT+QGEGG AGR AVF RF+GCNLWSGREQDR SA C FCDTDFVG G GG Sbjct: 3 YSAKEVFLTVQGEGGQAGRPAVFLRFAGCNLWSGREQDRASAVCSFCDTDFVGTDGDGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ D LAD + W + + V TGGEPLLQ+D PLI AL+ R FEIA+E+NGT+ Sbjct: 63 KFATADLLADHVAAMWRGRAGDPKLVVCTGGEPLLQLDPPLIAALHARDFEIAIESNGTL 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDWICVSPKA DL GQELKLV+PQ P+ + FERF LQPMDGP Sbjct: 123 AAPDGIDWICVSPKADADLIQVKGQELKLVYPQAKALPDRFEHLAFERFWLQPMDGPDQA 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 ENT AI YC +P+WRLSVQTHK+IG+R Sbjct: 183 ENTAAAIEYCLTHPQWRLSVQTHKYIGVR 211 >gi|162148726|ref|YP_001603187.1| hypothetical protein GDI_2954 [Gluconacetobacter diazotrophicus PAl 5] gi|209545507|ref|YP_002277736.1| hypothetical protein Gdia_3395 [Gluconacetobacter diazotrophicus PAl 5] gi|161787303|emb|CAP56897.1| conserved protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533184|gb|ACI53121.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] Length = 211 Score = 268 bits (685), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 131/208 (62%), Positives = 155/208 (74%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y+IKE+F TLQGEG HAGR AVFCRF+GCNLWSGRE DR +A CRFCDTDFVG GT GG Sbjct: 3 YAIKEMFATLQGEGAHAGRAAVFCRFAGCNLWSGREADRATAVCRFCDTDFVGTDGTGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ + LAD I W +E + V TGGEPLLQ+D LI A+++RGFEIAVETNGT+ Sbjct: 63 RFADASSLADAIAATWEAPGREHAFVVFTGGEPLLQLDDALIGAVHERGFEIAVETNGTL 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P G+DWICVSPKAG DL + G ELKLV+PQ ++ PE G DF +F LQPMDGP Sbjct: 123 PVPPGVDWICVSPKAGADLVQRTGHELKLVYPQPDLLPERVAGLDFRQFWLQPMDGPAQA 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A++YC +P+WRLS+QTHK IGI Sbjct: 183 ANTAAAVAYCRAHPRWRLSLQTHKLIGI 210 >gi|220926506|ref|YP_002501808.1| radical SAM domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219951113|gb|ACL61505.1| radical SAM domain-containing protein [Methylobacterium nodulans ORS 2060] Length = 210 Score = 267 bits (682), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 124/207 (59%), Positives = 149/207 (71%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG AGR AVFCRF+GCNLWSGRE DR A CRFCDTDFVG G GG Sbjct: 3 YAVKEIFHTLQGEGAQAGRAAVFCRFAGCNLWSGREADRADAICRFCDTDFVGTDGEGGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R+ + G ++GRY V TGGEPLLQ+D PL+ A++ RGF AVETNGT + Sbjct: 63 RFADAEALAAAIAAAWGGGRDGRYVVFTGGEPLLQLDAPLLAAVHARGFATAVETNGTQD 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 P+G+DWICVSPKAG L+I G ELKLV+PQ + PE+ +G DF F LQPMDGP Sbjct: 123 APEGLDWICVSPKAGAPLRITRGDELKLVYPQAGLRPEDLVGLDFRHFWLQPMDGPDRLA 182 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A++YC ++ +WRLS+QTHK IGI Sbjct: 183 NTEAAVAYCLRDARWRLSLQTHKLIGI 209 >gi|330994295|ref|ZP_08318223.1| 7-carboxy-7-deazaguanine synthase-like protein [Gluconacetobacter sp. SXCC-1] gi|329758762|gb|EGG75278.1| 7-carboxy-7-deazaguanine synthase-like protein [Gluconacetobacter sp. SXCC-1] Length = 211 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 124/208 (59%), Positives = 148/208 (71%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG HAGR AVFCRF+GCNLWSG E+DR A CRFCDTDF+G G GG Sbjct: 3 YTVKEIFPTLQGEGAHAGRTAVFCRFTGCNLWSGLERDRARATCRFCDTDFIGTDGAGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ + LAD I W +++ + V TGGEPLLQ+D LI A++ RGFEIAVETNGT+ Sbjct: 63 RFASASLLADAIAAHWPAPDRKAAFVVFTGGEPLLQLDDALITAVHARGFEIAVETNGTL 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDWICVSPKAG L G ELKLV+PQ ++ P G DF +F LQPMD + Sbjct: 123 RAPGGIDWICVSPKAGAPLVQTSGHELKLVYPQPDLLPGQVAGLDFSQFWLQPMDNAARD 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A+ YC +P+WRLS+QTHK IGI Sbjct: 183 HNTRAAVDYCLHHPQWRLSLQTHKLIGI 210 >gi|158422696|ref|YP_001523988.1| hypothetical protein AZC_1072 [Azorhizobium caulinodans ORS 571] gi|158329585|dbj|BAF87070.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 212 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 128/209 (61%), Positives = 150/209 (71%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG AGR AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG+ G GG Sbjct: 3 YAVKEIFKTLQGEGAQAGRAAVFCRFAGCNLWSGREEDRASAICRFCDTDFVGMDGEGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 R+ + LA I W GR Y V TGGEPLLQ+D LI+A++ GFEIA+ETNGT Sbjct: 63 RFADAPSLAATIARTWGEKGAGGRPYVVFTGGEPLLQLDAALIEAVHAEGFEIAIETNGT 122 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + P GIDWICVSPKAG ++ + G ELKLV+PQ V PE G FE + LQPMDGP Sbjct: 123 LPAPAGIDWICVSPKAGAEIVQRTGSELKLVYPQPEVPPEAVAGLTFEHYFLQPMDGPAR 182 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ENT I+YC +P+WRLS+QTHK GI Sbjct: 183 IENTQAVIAYCLAHPQWRLSLQTHKITGI 211 >gi|148554323|ref|YP_001261905.1| organic radical activating-like protein [Sphingomonas wittichii RW1] gi|148499513|gb|ABQ67767.1| Organic radical activating enzymes-like protein [Sphingomonas wittichii RW1] Length = 210 Score = 265 bits (678), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 130/212 (61%), Positives = 152/212 (71%), Gaps = 3/212 (1%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y++KE+FLTLQGEG GR AVF RF+GCNLWSGRE+DR AQCRFCDTDFVG+ G Sbjct: 1 MAGYAVKEMFLTLQGEGVQVGRRAVFLRFAGCNLWSGREEDRADAQCRFCDTDFVGLDGD 60 Query: 61 KGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GGRY + D LAD W G+ G + V+TGGEPLLQVD L+ AL RGFE AVETN Sbjct: 61 NGGRYPHADALADKAIALW--GDLAGAFIVMTGGEPLLQVDDALVAALKARGFETAVETN 118 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GT P GIDWICVSPKAG D+ ++ G ELKLV+PQ + P G+DFE F LQPMDG Sbjct: 119 GTQPAPAGIDWICVSPKAGTDIVLRRGNELKLVWPQPGIDPAALEGWDFEHFLLQPMDGA 178 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 L+E AI+Y +P+WRLS QTHK +GIR Sbjct: 179 QLDEARAAAIAYVMDHPRWRLSTQTHKVVGIR 210 >gi|94310513|ref|YP_583723.1| hypothetical protein Rmet_1571 [Cupriavidus metallidurans CH34] gi|93354365|gb|ABF08454.1| organic radical activating enzyme [Cupriavidus metallidurans CH34] Length = 211 Score = 264 bits (674), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 124/209 (59%), Positives = 153/209 (73%), Gaps = 1/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRFSGCNLW+GRE+DR A C+FCDTDFVG GT GG Sbjct: 3 YAVKEIFYTLQGEGANAGRAAVFCRFSGCNLWTGREEDRARAVCQFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +Y D+LA ++ +W G V TGGEPLLQ+D PLI AL+ RGFEIA+ETNGTI Sbjct: 63 KYKTADELAAVVAAEWPQGAGGKPLVVCTGGEPLLQLDAPLIGALHARGFEIAIETNGTI 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 E P+GIDW+CVSPK G +L +K G ELK+V PQ Y DF+ F +Q MDGP Sbjct: 123 EVPEGIDWVCVSPKMGSELVVKKGDELKVVIPQDGQDFAAYEQLDFQYFMVQAMDGPLAR 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT A+ +C ++P+WRLS+QTHK +GIR Sbjct: 183 QNTAAAVEFCQRHPRWRLSLQTHKLLGIR 211 >gi|124265719|ref|YP_001019723.1| hypothetical protein Mpe_A0526 [Methylibium petroleiphilum PM1] gi|124258494|gb|ABM93488.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 211 Score = 263 bits (673), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 123/209 (58%), Positives = 152/209 (72%), Gaps = 1/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KE+F TLQGEG HAGR AVFCRF+GCNLWSGRE DR A CRFCDT+FVG GT GG Sbjct: 3 YSVKEVFYTLQGEGSHAGRPAVFCRFAGCNLWSGREADRADAVCRFCDTEFVGTDGTGGG 62 Query: 64 RYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + + LA + W G+ R+ VLTGGEPLLQVD PLI AL+ + FEIAVETNG++ Sbjct: 63 KFTIAESLASHVAAHWPAGDAGPRFVVLTGGEPLLQVDAPLIDALHAQRFEIAVETNGSV 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDW+CVSPKAG L + GQELK+V PQ + G DF + +QPMDGP L Sbjct: 123 PAPPGIDWLCVSPKAGAPLLQRSGQELKVVVPQGGIDLGELDGLDFAQRRVQPMDGPDLA 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT+ A+ +C +P+W+LS+QTHK +GIR Sbjct: 183 ANTDWAVRWCLAHPRWQLSLQTHKLLGIR 211 >gi|317404069|gb|EFV84524.1| hypothetical protein HMPREF0005_04153 [Achromobacter xylosoxidans C54] Length = 210 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 123/208 (59%), Positives = 150/208 (72%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y+ KEIF TLQGEG HAGR AVFCRF+GCNLW+GRE DR SA C FCDTDF+G G GG Sbjct: 3 YTAKEIFKTLQGEGAHAGRAAVFCRFAGCNLWTGRESDRASAACTFCDTDFIGTDGDGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + + LAD IE W + RY V TGGEPLLQ+D L+ ++ RGF +A+ETNGT+ Sbjct: 63 KFASPELLADAIEAAW-GPDTANRYIVFTGGEPLLQLDEALLAVVHARGFTVAIETNGTV 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 +PP GIDWICVSPK + I+ G ELKLV+PQ N P + DF+ F LQPMDGP Sbjct: 122 QPPPGIDWICVSPKGTAPVVIERGNELKLVYPQANALPPRFEHLDFDHFFLQPMDGPARL 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A+ YC Q+P+WRLS+QTHK+IGI Sbjct: 182 ANTEQAVQYCMQHPQWRLSLQTHKYIGI 209 >gi|187478511|ref|YP_786535.1| hypothetical protein BAV2019 [Bordetella avium 197N] gi|115423097|emb|CAJ49628.1| conserved hypothetical protein [Bordetella avium 197N] Length = 210 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 126/208 (60%), Positives = 147/208 (70%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS KEIF TLQGEG AGR AVFCRFSGCNLWSGRE DR +A C FCDTDFVG G GG Sbjct: 3 YSAKEIFKTLQGEGAQAGRAAVFCRFSGCNLWSGRESDRAAAACTFCDTDFVGSDGEGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + LAD I W ++ GRY V TGGEPLLQ+D LI A++ +GF IA+ETNGT+ Sbjct: 63 KFRDAQALADTIARTW-GPDRAGRYVVFTGGEPLLQLDEALIDAVHAQGFTIAIETNGTL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P G+DWICVSPK + GQELKLVFPQV PE + G DFE F LQP+D P Sbjct: 122 PVPAGVDWICVSPKGRAPVVQTRGQELKLVFPQVEAPPEAFAGLDFEHFFLQPLDSPLRR 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +T A+ YC +P+WRLSVQTHK+IGI Sbjct: 182 AHTEAAVQYCMAHPQWRLSVQTHKYIGI 209 >gi|73541537|ref|YP_296057.1| hypothetical protein Reut_A1848 [Ralstonia eutropha JMP134] gi|72118950|gb|AAZ61213.1| conserved hypothetical protein [Ralstonia eutropha JMP134] Length = 211 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 122/209 (58%), Positives = 155/209 (74%), Gaps = 1/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR +A C+FCDTDFVG GT+GG Sbjct: 3 YAVKEIFYTLQGEGANAGRAAVFCRFAGCNLWSGREEDRATAVCQFCDTDFVGTDGTRGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +Y ++LA + +W G V TGGEPLLQ+D PLI AL+ +GFEIA+ETNGTI Sbjct: 63 KYRTAEELAGAVASEWPQGAGGKPLVVCTGGEPLLQLDAPLIDALHAQGFEIAIETNGTI 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + P GIDW+CVSPK G +L ++ G ELK+V PQV Y DF+ F +Q MDGP Sbjct: 123 KVPPGIDWVCVSPKMGSELVVRKGDELKVVIPQVGQDFAAYEQLDFQYFLVQAMDGPLAR 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 ENT A+++C ++P+WRLS+QTHK +GIR Sbjct: 183 ENTAAAVAFCQRHPRWRLSLQTHKLLGIR 211 >gi|197106204|ref|YP_002131581.1| hypothetical protein PHZ_c2743 [Phenylobacterium zucineum HLK1] gi|196479624|gb|ACG79152.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 241 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 130/207 (62%), Positives = 147/207 (71%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEGG AGR AVFCRF+GCNLWSGRE+DR A C FCDTDFVG+ G GG Sbjct: 34 YAVKEIFLTLQGEGGQAGRPAVFCRFAGCNLWSGREEDREKAVCTFCDTDFVGMDGPGGG 93 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R+ E G R VLTGGEPLLQVD LI+AL+ RGF IA+ETNGT+ Sbjct: 94 RFADAAALAAAIEAQWAGGPNDRLVVLTGGEPLLQVDEALIEALHARGFSIALETNGTLP 153 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 P GIDWICVSPKA + GQELKLVFPQ PE + DFERF LQPMDGP Sbjct: 154 VPPGIDWICVSPKADAPVVQTRGQELKLVFPQEKALPERFEHLDFERFLLQPMDGPDRAA 213 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT AI+YC +P+WRLSVQTHK++GI Sbjct: 214 NTRAAIAYCLAHPRWRLSVQTHKYLGI 240 >gi|134094603|ref|YP_001099678.1| hypothetical protein HEAR1379 [Herminiimonas arsenicoxydans] Length = 248 Score = 261 bits (668), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 123/208 (59%), Positives = 149/208 (71%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YSIKEIF TLQGEG HAGR AVFCRFSGCNLW+GRE DR +A C+FCDTDFVG G GG Sbjct: 40 YSIKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGRESDRATAVCQFCDTDFVGTDGEGGG 99 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + +LA+ I W +Y V TGGEPLLQ+D LI A++ GFEIA+ETNGT+ Sbjct: 100 KFADAVKLANTINALWPASYAASKYVVFTGGEPLLQLDTELINAMHAVGFEIAIETNGTL 159 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P G+DWICVSPK G L ++ G ELK+V PQ+ S Y DF+ F +QPMDGP E Sbjct: 160 PVPAGVDWICVSPKMGSQLVVRKGSELKVVIPQLAQSLAAYEDLDFQHFFVQPMDGPLAE 219 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +NT LAI C +NPKW+LS+QTHK + I Sbjct: 220 QNTRLAIEICKKNPKWKLSLQTHKLLQI 247 >gi|193222302|emb|CAL61551.2| Conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 211 Score = 261 bits (668), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 123/208 (59%), Positives = 149/208 (71%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YSIKEIF TLQGEG HAGR AVFCRFSGCNLW+GRE DR +A C+FCDTDFVG G GG Sbjct: 3 YSIKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGRESDRATAVCQFCDTDFVGTDGEGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + +LA+ I W +Y V TGGEPLLQ+D LI A++ GFEIA+ETNGT+ Sbjct: 63 KFADAVKLANTINALWPASYAASKYVVFTGGEPLLQLDTELINAMHAVGFEIAIETNGTL 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P G+DWICVSPK G L ++ G ELK+V PQ+ S Y DF+ F +QPMDGP E Sbjct: 123 PVPAGVDWICVSPKMGSQLVVRKGSELKVVIPQLAQSLAAYEDLDFQHFFVQPMDGPLAE 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +NT LAI C +NPKW+LS+QTHK + I Sbjct: 183 QNTRLAIEICKKNPKWKLSLQTHKLLQI 210 >gi|17546168|ref|NP_519570.1| hypothetical protein RSc1449 [Ralstonia solanacearum GMI1000] gi|17428464|emb|CAD15151.1| probable organic radical activating enzyme protein [Ralstonia solanacearum GMI1000] Length = 212 Score = 261 bits (668), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 125/210 (59%), Positives = 148/210 (70%), Gaps = 2/210 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT GG Sbjct: 3 YAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRAAAICQFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVL-TGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 +Y D LAD + QW GR V+ TGGEPLLQ+D PLI AL+ RGFEIA+ETNGT Sbjct: 63 KYPTADALADTVAAQWPAAATGGRPLVVCTGGEPLLQLDRPLIDALHARGFEIAIETNGT 122 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + P GIDW+CVSPK G +L + G ELK+V PQ + Y DF F LQPMDGP Sbjct: 123 LAVPDGIDWVCVSPKMGAELVVTRGDELKVVIPQPGQDLDAYERLDFRHFFLQPMDGPLA 182 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT LA+ C + P+W LS+QTHK +GIR Sbjct: 183 RRNTALAVELCQRRPRWHLSLQTHKMLGIR 212 >gi|194289720|ref|YP_002005627.1| hypothetical protein RALTA_A1615 [Cupriavidus taiwanensis LMG 19424] gi|193223555|emb|CAQ69560.1| conserved hypothetical protein, NrdG domain (Organic radical activating enzymes) [Cupriavidus taiwanensis LMG 19424] Length = 211 Score = 261 bits (668), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 122/209 (58%), Positives = 151/209 (72%), Gaps = 1/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR SA C+FCDTDFVG GT+GG Sbjct: 3 YAVKEIFYTLQGEGANAGRAAVFCRFAGCNLWSGREEDRASAVCQFCDTDFVGTDGTRGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +Y +LA ++ +W G V TGGEPLLQ+D PLI+AL+ GFEIA+ETNGTI Sbjct: 63 KYRTAAELAAVVASEWPQGAGGKPLVVCTGGEPLLQLDAPLIEALHAHGFEIAIETNGTI 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDW+CVSPK G +L + G ELK+V PQ Y DF F +Q MDGP Sbjct: 123 AVPPGIDWVCVSPKMGSELVVTRGDELKVVIPQDGQDFAAYEKLDFRHFLVQAMDGPLAR 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 ENT A+++C ++P+WRLS+QTHK +GIR Sbjct: 183 ENTAAAVAFCQRHPRWRLSLQTHKLLGIR 211 >gi|113867905|ref|YP_726394.1| organic radical activating enzyme [Ralstonia eutropha H16] gi|113526681|emb|CAJ93026.1| organic radical activating enzyme [Ralstonia eutropha H16] Length = 211 Score = 261 bits (666), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 122/209 (58%), Positives = 152/209 (72%), Gaps = 1/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR SA C+FCDTDFVG GT+GG Sbjct: 3 YAVKEIFYTLQGEGANAGRAAVFCRFAGCNLWSGREEDRASAVCQFCDTDFVGTDGTRGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +Y ++LA ++ +W G V TGGEPLLQ+D PLI AL+ +GFEIA+ETNGTI Sbjct: 63 KYRTAEELAAVVASEWPQGAGGQPLVVCTGGEPLLQLDAPLIDALHAQGFEIAIETNGTI 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDW+CVSPK G +L + G ELK+V PQ Y DF F +Q MDGP Sbjct: 123 AVPPGIDWVCVSPKMGSELVVTRGDELKVVIPQEGQDFAAYEQLDFRHFLVQAMDGPLAR 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 ENT A+++C ++P+WRLS+QTHK +GIR Sbjct: 183 ENTAAAVAFCQRHPRWRLSLQTHKLLGIR 211 >gi|300691566|ref|YP_003752561.1| hypothetical protein RPSI07_1920 [Ralstonia solanacearum PSI07] gi|299078626|emb|CBJ51283.1| conserved protein of unknown function (Organic radical activating enzymes) [Ralstonia solanacearum PSI07] Length = 212 Score = 261 bits (666), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 124/210 (59%), Positives = 151/210 (71%), Gaps = 2/210 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT+GG Sbjct: 3 YAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAICQFCDTDFVGTDGTQGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVL-TGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 +Y D LAD + QW G+ V+ TGGEPLLQ+D PLI AL+ RGFEIA+ETNGT Sbjct: 63 KYPTADALADTVVAQWPADATGGQPLVVCTGGEPLLQLDRPLIDALHARGFEIAIETNGT 122 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + P GIDW+CVSPK G +L + G ELK+V PQ + + Y DF F LQPMDGP Sbjct: 123 LAVPDGIDWVCVSPKMGAELVVTRGDELKVVIPQQDQDLDAYERLDFRHFFLQPMDGPLA 182 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT LA+ C + P+W LS+QTHK +GIR Sbjct: 183 RQNTALAVDLCQRRPRWHLSLQTHKMLGIR 212 >gi|241662994|ref|YP_002981354.1| hypothetical protein Rpic12D_1394 [Ralstonia pickettii 12D] gi|309782087|ref|ZP_07676817.1| GntS [Ralstonia sp. 5_7_47FAA] gi|240865021|gb|ACS62682.1| conserved hypothetical protein [Ralstonia pickettii 12D] gi|308919153|gb|EFP64820.1| GntS [Ralstonia sp. 5_7_47FAA] Length = 212 Score = 260 bits (665), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 123/210 (58%), Positives = 151/210 (71%), Gaps = 2/210 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT+GG Sbjct: 3 YAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAVCQFCDTDFVGTDGTQGG 62 Query: 64 RYN-VDQLADLIEEQWITGEKEGRYCVL-TGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 +Y D LAD + +W G+ V+ TGGEPLLQ+D PLI AL+ RGFEIA+ETNGT Sbjct: 63 KYTTADALADTVAAEWPASATGGKPLVICTGGEPLLQLDKPLIDALHARGFEIAIETNGT 122 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 I P+GIDW+CVSPK G +L + G ELK+V PQ + Y DF+ F LQ MDGP Sbjct: 123 ITVPEGIDWVCVSPKMGSELVVTRGDELKVVIPQDGQDLDAYERLDFQHFFLQAMDGPLA 182 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT A+ C + P+WRLS+QTHK +GIR Sbjct: 183 RQNTAAAVELCQRRPRWRLSLQTHKMLGIR 212 >gi|326318538|ref|YP_004236210.1| Radical SAM domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375374|gb|ADX47643.1| Radical SAM domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 212 Score = 260 bits (665), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 130/210 (61%), Positives = 148/210 (70%), Gaps = 2/210 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIF TLQGEGG AG AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG GT GG Sbjct: 3 YSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWSGREEDRSSAICRFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +Y D LAD+I QW + + R VLTGGEPLLQ+D PLI AL+ RG IAVE+NGT+ Sbjct: 63 KYAQADALADVIAAQWPAHDADHRLVVLTGGEPLLQLDTPLIDALHARGMRIAVESNGTV 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS-PENYIGFDFERFSLQPMDGPFL 181 P GIDW+CVSPKAG + GQELKLV+PQ E FE LQPMDGP Sbjct: 123 AAPPGIDWLCVSPKAGAPWVQRAGQELKLVWPQPGFDLAELENATRFEHRFLQPMDGPEQ 182 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT+L I+ C + P WRLS+QTHK GIR Sbjct: 183 AANTSLCIAACMERPAWRLSLQTHKLTGIR 212 >gi|260223401|emb|CBA33932.1| hypothetical protein Csp_B21500 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 225 Score = 260 bits (665), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 126/209 (60%), Positives = 148/209 (70%), Gaps = 1/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y +KEIF TLQGEG HAGR AVFCRF+GCNLWSGREQDR +A C+FCDTDFVG GT GG Sbjct: 17 YQVKEIFYTLQGEGSHAGRPAVFCRFAGCNLWSGREQDRATAVCKFCDTDFVGTDGTLGG 76 Query: 64 RYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +++ Q LA+ I QW G+ R+ V+TGGEPLLQVD LI AL+ GF+IAVETNGT+ Sbjct: 77 KFSTAQALAERIAAQWPAGDTAHRFVVMTGGEPLLQVDTALIDALHALGFQIAVETNGTV 136 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+GIDWICVSPKAG + G ELKLV+PQ ++ E DF+ LQPMD P Sbjct: 137 LVPEGIDWICVSPKAGSQWIQRQGHELKLVWPQAGITLEECEAADFKHRYLQPMDSPQRA 196 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 N I+ C Q P WRLS+QTHK GIR Sbjct: 197 ANIETCITQCMQRPAWRLSLQTHKITGIR 225 >gi|217977590|ref|YP_002361737.1| radical SAM domain protein [Methylocella silvestris BL2] gi|217502966|gb|ACK50375.1| radical SAM domain protein [Methylocella silvestris BL2] Length = 211 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 125/211 (59%), Positives = 153/211 (72%), Gaps = 2/211 (0%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y++KEIF TLQGEG AGR AVFCRF+GCNLWSGRE+DR +A C FCDTDF+G G Sbjct: 1 MGRYAVKEIFPTLQGEGAQAGRAAVFCRFAGCNLWSGREKDRAAAACPFCDTDFIGTDGP 60 Query: 61 KGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GG + ++LA IE W+ G GRY V TGGEPLLQ+D LI A++ RGFE AVETN Sbjct: 61 GGGVFGGAEELAGAIEAAWLGGPA-GRYVVFTGGEPLLQLDDALIAAVHARGFEAAVETN 119 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GT+EPP G+DW+CVSPKAG + + G ELKLV+PQ ++ P+ G F F LQPMDG Sbjct: 120 GTLEPPAGVDWLCVSPKAGAPIVVTAGSELKLVYPQDDLLPDALSGLQFAHFWLQPMDGA 179 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ NT A++YC +P WRLS+QTHK IGI Sbjct: 180 NVDANTKAAVAYCLAHPDWRLSLQTHKLIGI 210 >gi|300704193|ref|YP_003745795.1| hypothetical protein RCFBP_11899 [Ralstonia solanacearum CFBP2957] gi|299071856|emb|CBJ43184.1| conserved protein of unknown function (Organic radical activating enzymes) [Ralstonia solanacearum CFBP2957] Length = 212 Score = 259 bits (662), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 125/210 (59%), Positives = 148/210 (70%), Gaps = 2/210 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT GG Sbjct: 3 YAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRAAAVCQFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 +Y D LAD + QW GR V TGGEPLLQ+D LI AL+ RGFEIAVETNGT Sbjct: 63 KYPTADALADTVAAQWPADATGGRPLVVCTGGEPLLQLDRCLIDALHARGFEIAVETNGT 122 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + P+GIDW+CVSPK G +L + G ELK+V PQ + Y DF F LQPMDGP Sbjct: 123 VAVPEGIDWVCVSPKMGAELVVTRGDELKVVIPQSGQDLDAYERLDFRHFFLQPMDGPLA 182 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT LA+ C + P+W LS+QTHK +GIR Sbjct: 183 RQNTALAVELCQRRPRWHLSLQTHKMLGIR 212 >gi|120612485|ref|YP_972163.1| hypothetical protein Aave_3844 [Acidovorax citrulli AAC00-1] gi|120590949|gb|ABM34389.1| conserved hypothetical protein [Acidovorax citrulli AAC00-1] Length = 212 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 129/210 (61%), Positives = 147/210 (70%), Gaps = 2/210 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIF TLQGEGG AG AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG GT GG Sbjct: 3 YSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWSGREEDRSSAVCRFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +Y + LAD+I QW + + R VLTGGEPLLQ+D PLI AL+ RG IAVE+NGT+ Sbjct: 63 KYAQAEALADVIAAQWPAHDADHRLVVLTGGEPLLQLDTPLIDALHARGMRIAVESNGTV 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS-PENYIGFDFERFSLQPMDGPFL 181 P GIDW+CVSPKAG + GQELKLV+PQ E FE LQPMDGP Sbjct: 123 AAPPGIDWLCVSPKAGAPWVQRAGQELKLVWPQPGFDLAELESATRFEHRFLQPMDGPDQ 182 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT L I+ C + P WRLS+QTHK GIR Sbjct: 183 AANTGLCIAACMERPAWRLSLQTHKLTGIR 212 >gi|58039977|ref|YP_191941.1| hypothetical protein GOX1543 [Gluconobacter oxydans 621H] gi|58002391|gb|AAW61285.1| Hypothetical protein GOX1543 [Gluconobacter oxydans 621H] Length = 213 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 124/210 (59%), Positives = 147/210 (70%), Gaps = 3/210 (1%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE+F+TLQGEG GR +VFCRF+GCNLWSGREQDR +A C FCDTDF+G G GG Sbjct: 3 YAVKEMFVTLQGEGAQTGRASVFCRFAGCNLWSGREQDRATAACSFCDTDFIGTDGEGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 R+ D LAD I W + E RY V TGGEPLLQ+D LI A+ RGFEIAVETNG Sbjct: 63 RFETADALADTIAACWTSTADESGRRYVVFTGGEPLLQLDDALIAAVKARGFEIAVETNG 122 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 TI P GIDW+CVSPK G L G ELKLV+PQ + PE + F F LQPMDGP Sbjct: 123 TIAAPAGIDWVCVSPKPGGALVQTEGAELKLVYPQPELPPEMFEKLSFRHFWLQPMDGPD 182 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A+++C ++P+WRLS+QTHK IGI Sbjct: 183 RIANTEAAVAHCLRHPRWRLSLQTHKLIGI 212 >gi|329113419|ref|ZP_08242200.1| 7-carboxy-7-deazaguanine synthase-like protein [Acetobacter pomorum DM001] gi|326697244|gb|EGE48904.1| 7-carboxy-7-deazaguanine synthase-like protein [Acetobacter pomorum DM001] Length = 216 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 127/216 (58%), Positives = 151/216 (69%), Gaps = 12/216 (5%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIFLTLQGEGG AGR AVFCRF+GCNLWSGRE+DR +A C+FCDTDF+G G GG Sbjct: 3 YSVKEIFLTLQGEGGQAGRAAVFCRFTGCNLWSGREEDRATATCQFCDTDFIGTDGINGG 62 Query: 64 RY-NVDQLADLIEEQW--------ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114 ++ N LA I W TG+K V TGGEPLLQ+D LI A++ +GF I Sbjct: 63 KFENAADLAATIASFWPQPTQDVKATGQK---LVVFTGGEPLLQLDTALINAMHAQGFTI 119 Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174 AVE+NGTI P+GIDW+C+SPKAG +L K G ELKLVFPQ + P + DF+ F LQ Sbjct: 120 AVESNGTIAAPKGIDWLCISPKAGAELVQKAGTELKLVFPQPGIDPASVENLDFQHFWLQ 179 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 PMDGP NT AI YC ++P W LS+QTHK IGI Sbjct: 180 PMDGPQQAANTQAAIEYCLEHPLWGLSLQTHKLIGI 215 >gi|187928417|ref|YP_001898904.1| hypothetical protein Rpic_1329 [Ralstonia pickettii 12J] gi|187725307|gb|ACD26472.1| conserved hypothetical protein [Ralstonia pickettii 12J] Length = 212 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 122/210 (58%), Positives = 151/210 (71%), Gaps = 2/210 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT+GG Sbjct: 3 YAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAVCQFCDTDFVGTDGTQGG 62 Query: 64 RYN-VDQLADLIEEQWITGEKEGRYCVL-TGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 +Y + LAD + +W G+ V+ TGGEPLLQ+D PLI AL+ RGFEIA+ETNGT Sbjct: 63 KYTTAEALADTVAAEWPASATGGKPLVICTGGEPLLQLDKPLIDALHARGFEIAIETNGT 122 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 I P+GIDW+CVSPK G +L + G ELK+V PQ + Y DF+ F LQ MDGP Sbjct: 123 IAVPEGIDWVCVSPKMGSELVVTRGDELKVVIPQDGQDLDAYERLDFQHFFLQAMDGPLA 182 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT A+ C + P+WRLS+QTHK +GIR Sbjct: 183 RQNTAAAVELCQRRPRWRLSLQTHKMLGIR 212 >gi|152981565|ref|YP_001353700.1| organic radical activating enzyme [Janthinobacterium sp. Marseille] gi|151281642|gb|ABR90052.1| organic radical activating enzyme [Janthinobacterium sp. Marseille] Length = 211 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 122/208 (58%), Positives = 146/208 (70%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIF TLQGEG HAGR AVFCRFSGCNLW+GRE DR +A C+FCDTDFVG G GG Sbjct: 3 YSVKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGRESDRATAVCQFCDTDFVGTNGEGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + LA I W +Y V TGGEPLLQ+D LI A++ GFEIA+ETNGT+ Sbjct: 63 KFVDGSTLAHTINALWPESYAASKYVVFTGGEPLLQLDTELIDAMHAVGFEIAIETNGTL 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P G+DWICVSPK G L ++ G ELK+V PQ S Y +FE F +QPMDGP E Sbjct: 123 PVPAGVDWICVSPKMGSQLVVRKGSELKVVIPQAEQSLAAYEALEFEHFFVQPMDGPLAE 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +NT LAI C +NPKW+LS+QTHK + I Sbjct: 183 QNTKLAIDVCKRNPKWKLSLQTHKLLQI 210 >gi|91787388|ref|YP_548340.1| hypothetical protein Bpro_1494 [Polaromonas sp. JS666] gi|91696613|gb|ABE43442.1| conserved hypothetical protein [Polaromonas sp. JS666] Length = 211 Score = 258 bits (659), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 127/209 (60%), Positives = 146/209 (69%), Gaps = 1/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y +KEIF TLQGEG +AGR AVFCRF+GCNLWSGREQDR +A C+FCDTDFVG GT GG Sbjct: 3 YQVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREQDRATAVCQFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + D LA LIE QW ++ R V+TGGEPLLQVDV LI AL+ RGF+IAVETNGTI Sbjct: 63 KFADADALARLIEAQWPADDRAHRLVVMTGGEPLLQVDVALIAALHARGFQIAVETNGTI 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDWICVSPKAG + GQELK+V+PQ F LQPMD Sbjct: 123 AAPAGIDWICVSPKAGAPWIQREGQELKVVWPQAGFELAELEAARFTHRFLQPMDNARRA 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT I+ C Q P WRLS+QTHK GIR Sbjct: 183 DNTQACIALCMQRPAWRLSLQTHKITGIR 211 >gi|160897280|ref|YP_001562862.1| hypothetical protein Daci_1837 [Delftia acidovorans SPH-1] gi|160362864|gb|ABX34477.1| conserved hypothetical protein [Delftia acidovorans SPH-1] Length = 212 Score = 258 bits (658), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 125/210 (59%), Positives = 151/210 (71%), Gaps = 2/210 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIF TLQGEGG AG A+FCRF+GCNLW+GREQDR SA C+FCDTDFVG GT GG Sbjct: 3 YSVKEIFYTLQGEGGQAGTPAIFCRFTGCNLWTGREQDRASAICQFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ D LA+ I QW G+ + R VLTGGEPLLQVD PLI AL+ RGF I+VE+NGT+ Sbjct: 63 KFATADALAERILSQWPAGDSQHRMVVLTGGEPLLQVDEPLIAALHARGFRISVESNGTV 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY-IGFDFERFSLQPMDGPFL 181 P+GIDW+C+SPKAG + + GQELKLV+PQ + G F+R+ LQPMD Sbjct: 123 AAPEGIDWLCISPKAGAEWVQRSGQELKLVWPQPGFDLQAIEAGTRFDRYFLQPMDNVLQ 182 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT I+ C Q P WRLS+QTHK GIR Sbjct: 183 ADNTAACIAQCLQRPAWRLSLQTHKLTGIR 212 >gi|237748637|ref|ZP_04579117.1| organic radical activating enzyme [Oxalobacter formigenes OXCC13] gi|229379999|gb|EEO30090.1| organic radical activating enzyme [Oxalobacter formigenes OXCC13] Length = 219 Score = 258 bits (658), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 122/208 (58%), Positives = 146/208 (70%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIF TLQGEG +GR AVFCRFSGCNLWSGRE DR + CRFCDTDFVG G GG Sbjct: 11 YSVKEIFYTLQGEGARSGRPAVFCRFSGCNLWSGREADRSRSVCRFCDTDFVGTDGVNGG 70 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + L+ IE W G E RY V TGGEPLLQ+D LI A++ +GFEIA+ETNGT+ Sbjct: 71 KFAQAEDLSSFIESLWPAGFMENRYVVFTGGEPLLQLDAALIDAMHGKGFEIAIETNGTL 130 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDW+CVSPKAG DL + GG ELK+V PQ +Y F F +QPMDG Sbjct: 131 AVPDGIDWVCVSPKAGADLAVAGGDELKVVVPQPGQILADYESLAFTHFYVQPMDGENRL 190 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +N +AI C QNPKW+LS+QTHK++ I Sbjct: 191 QNVKIAIDTCLQNPKWKLSLQTHKYLQI 218 >gi|319795394|ref|YP_004157034.1| radical SAM protein [Variovorax paradoxus EPS] gi|315597857|gb|ADU38923.1| Radical SAM domain protein [Variovorax paradoxus EPS] Length = 212 Score = 257 bits (657), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 128/210 (60%), Positives = 147/210 (70%), Gaps = 2/210 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIF TLQGEGG AG AVFCRF+GCNLW+GRE+DR SA CRFCDTDFVG GT GG Sbjct: 3 YSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWTGREEDRASAVCRFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ DQLAD I QW + E R VLTGGEPLLQVD L+ AL+ R F IAVE+NGT+ Sbjct: 63 KFKTADQLADTIAAQWPANDAEHRLVVLTGGEPLLQVDAALVDALHARRFRIAVESNGTV 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-DFERFSLQPMDGPFL 181 P+GIDW+C+SPKAG + GQELKLV+PQ + DF LQPMDGP Sbjct: 123 AAPEGIDWLCISPKAGAPWVQQRGQELKLVWPQTAFDLDAMARTGDFTHRFLQPMDGPDR 182 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT L I+ C + P WRLSVQTHK GIR Sbjct: 183 VANTELCIAECMRQPAWRLSVQTHKITGIR 212 >gi|299067500|emb|CBJ38699.1| conserved protein of unknown function (Organic radical activating enzymes) [Ralstonia solanacearum CMR15] Length = 212 Score = 257 bits (657), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 124/210 (59%), Positives = 148/210 (70%), Gaps = 2/210 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT GG Sbjct: 3 YAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAICQFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVL-TGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 +Y D LAD + QW GR V+ TGGEPLLQ+D LI AL+ RGFEIA+ETNGT Sbjct: 63 KYPTADALADTVAAQWPVAATGGRPLVVCTGGEPLLQLDRLLIDALHARGFEIAIETNGT 122 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + P GIDW+CVSPK G +L + G ELK+V PQ + Y DF F LQPMDGP Sbjct: 123 LAVPDGIDWVCVSPKLGAELVVTRGDELKVVIPQPGQDLDAYERLDFRHFFLQPMDGPLA 182 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT LA+ C + P+W LS+QTHK +GIR Sbjct: 183 RQNTALAVELCQRRPRWHLSLQTHKMLGIR 212 >gi|170748800|ref|YP_001755060.1| hypothetical protein Mrad2831_2382 [Methylobacterium radiotolerans JCM 2831] gi|170655322|gb|ACB24377.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM 2831] Length = 210 Score = 257 bits (657), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 120/207 (57%), Positives = 143/207 (69%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG AGR AVFCRF+GCNLWSGRE DR +A CRFCDTDFVG+ G GG Sbjct: 3 YAVKEIFHTLQGEGAQAGRAAVFCRFAGCNLWSGREADRAAAACRFCDTDFVGMDGEGGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R+ G E RY V TGGEPLLQ+D PLI+A++ GFEIA+ETNGT+ Sbjct: 63 RFADAASLADAIAATWAGGAENRYVVFTGGEPLLQLDTPLIEAVHAAGFEIAIETNGTLP 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 P GIDWICVSPK L G ELKLV+PQ + P ++G F+ LQPMDGP Sbjct: 123 APPGIDWICVSPKGSNALAQVSGHELKLVYPQADADPAAFVGLAFQHRFLQPMDGPDRAA 182 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 +T AI+YC ++ +WRLS+QTHK IGI Sbjct: 183 STEAAIAYCRRDARWRLSLQTHKMIGI 209 >gi|86742064|ref|YP_482464.1| hypothetical protein Francci3_3380 [Frankia sp. CcI3] gi|86568926|gb|ABD12735.1| conserved hypothetical protein [Frankia sp. CcI3] Length = 212 Score = 257 bits (656), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 122/211 (57%), Positives = 148/211 (70%), Gaps = 2/211 (0%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y IKEIF TLQGEG +GR AVFCRF+ CNLW+GRE+DR A C+FCDTDFVG G G Sbjct: 2 VYRIKEIFYTLQGEGVRSGRPAVFCRFALCNLWTGRERDRHRAVCQFCDTDFVGTDGPDG 61 Query: 63 GRYNV-DQLADLIEEQWITGEKEG-RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 G ++ D LAD + +W + Y V TGGEPLLQ+D P + AL+ RGFE+AVETNG Sbjct: 62 GVFDTPDDLADAVAARWPSDAPGALPYVVCTGGEPLLQLDTPAVSALHTRGFEVAVETNG 121 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T P G+DW+CVSPKAG L++ G ELKLVFPQ PE + G +F LQPMDGP Sbjct: 122 TCPAPAGLDWVCVSPKAGAPLRLTTGDELKLVFPQPGAGPELFAGLEFGHHLLQPMDGPH 181 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 E NT A+ YC +P+WRLS+QTHK +GIR Sbjct: 182 REANTRAALDYCLAHPRWRLSIQTHKILGIR 212 >gi|121603954|ref|YP_981283.1| hypothetical protein Pnap_1045 [Polaromonas naphthalenivorans CJ2] gi|120592923|gb|ABM36362.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2] Length = 211 Score = 257 bits (656), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 126/209 (60%), Positives = 144/209 (68%), Gaps = 1/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y +KEIF TLQGEG HAGR A+FCRF+GCNLWSGRE DR +A CRFCDTDFVG GT GG Sbjct: 3 YQVKEIFYTLQGEGSHAGRPAIFCRFAGCNLWSGREPDRATAVCRFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ N + LA IE QW G+ R+ V+TGGEPLLQVD LI AL+ RGF IAVETNGTI Sbjct: 63 KFKNAEALAGCIEAQWPAGDSAHRFVVMTGGEPLLQVDGALIAALHARGFVIAVETNGTI 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDWICVSPKAG + G ELK+V+PQ + F LQPMD P Sbjct: 123 AAPPGIDWICVSPKAGAPWIQREGHELKVVWPQPALDWAELEAARFTHRYLQPMDNPAWR 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT I+ C +NP WRLS+QTHK GIR Sbjct: 183 NNTEACIALCLENPAWRLSLQTHKITGIR 211 >gi|302558410|ref|ZP_07310752.1| GntS family protein [Streptomyces griseoflavus Tu4000] gi|302476028|gb|EFL39121.1| GntS family protein [Streptomyces griseoflavus Tu4000] Length = 213 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 120/209 (57%), Positives = 147/209 (70%), Gaps = 1/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y IKEIF TLQGEG HAGR AVFCRFS CNLW+GRE DR A C+FCDTDFVG G GG Sbjct: 5 YLIKEIFYTLQGEGSHAGRPAVFCRFSRCNLWTGREADRSRAICQFCDTDFVGTDGEGGG 64 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ + LAD +E W + ++ R+ V TGGEPLLQ+D I AL+ RGFE+AVETNGT Sbjct: 65 RFRTAEDLADAVEAAWPSTDRAHRFVVCTGGEPLLQLDEDAIAALHARGFEVAVETNGTR 124 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDW+CVSPK G L + G ELKLV+PQ P + G DF+ LQP+D E Sbjct: 125 PAPHGIDWLCVSPKIGSQLVLTSGDELKLVYPQAGGDPAQFEGLDFQHLRLQPLDDANRE 184 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 ++T A+ YC +NP+W LS+QTHK++GI+ Sbjct: 185 DHTRAAVEYCMKNPRWTLSLQTHKYLGIQ 213 >gi|296445573|ref|ZP_06887529.1| Radical SAM domain protein [Methylosinus trichosporium OB3b] gi|296256978|gb|EFH04049.1| Radical SAM domain protein [Methylosinus trichosporium OB3b] Length = 210 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 121/208 (58%), Positives = 141/208 (67%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE F TLQGEG H GR AVFCRF+GCNLWSGRE DR A CRFCDTDFVG G GG Sbjct: 3 YAVKEAFKTLQGEGRHVGRAAVFCRFAGCNLWSGREIDRAEAVCRFCDTDFVGTNGEGGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R+ GE+E R+ VLTGGEP+LQ+D L+ AL+ GFEIA+ETNGT Sbjct: 63 RFETAAALAAHLAGLWGGERERRFVVLTGGEPMLQIDAALVDALHDAGFEIAIETNGTRA 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 P IDWICVSPKAG L G ELKLV+PQ PE + G F+ F LQPMDGP + Sbjct: 123 APSEIDWICVSPKAGAPLVQSSGDELKLVYPQPGAEPELFEGLAFDHFLLQPMDGPEAAQ 182 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT A+ YC +P+WR S+QTHK IG+R Sbjct: 183 NTRAAVDYCLAHPRWRFSLQTHKTIGVR 210 >gi|209515825|ref|ZP_03264687.1| Radical SAM domain protein [Burkholderia sp. H160] gi|209503673|gb|EEA03667.1| Radical SAM domain protein [Burkholderia sp. H160] Length = 210 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 124/208 (59%), Positives = 151/208 (72%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G GG Sbjct: 3 YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62 Query: 64 RYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +Y D+L +I QW GE E R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG++ Sbjct: 63 KYRTPDELVAMIASQWPQGEGE-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP + Sbjct: 122 PVLDTIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPSRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++PKWRLS+QTHK++ I Sbjct: 182 LNTKLAIDWCKRHPKWRLSMQTHKYLNI 209 >gi|224824585|ref|ZP_03697692.1| conserved hypothetical protein [Lutiella nitroferrum 2002] gi|224603078|gb|EEG09254.1| conserved hypothetical protein [Lutiella nitroferrum 2002] Length = 209 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 126/210 (60%), Positives = 150/210 (71%), Gaps = 2/210 (0%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y++KEIF TLQGEG AGR AVFCRF+GCNLWSG+E+ R A C+FCDTDFVG G G Sbjct: 1 MYTVKEIFYTLQGEGRQAGRAAVFCRFAGCNLWSGKERHRAKAICQFCDTDFVGT-GPDG 59 Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 G++ +QLA+ I W G + V TGGEPLLQ+D PLI AL+ RGFEIAVETNGT Sbjct: 60 GKFKTAEQLAERIAGAWPAGAGGTPFVVCTGGEPLLQLDAPLIDALHARGFEIAVETNGT 119 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + P GIDW+CVSPKAG L G ELKLV+PQ + PE+ G F+ F LQPMDGP + Sbjct: 120 VAAPPGIDWLCVSPKAGAPLLQTSGHELKLVYPQPTLMPESVAGLAFQNFYLQPMDGPDV 179 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT AI+YC P+WRLSVQTHK + IR Sbjct: 180 AANTRAAIAYCMAQPQWRLSVQTHKVLNIR 209 >gi|329889514|ref|ZP_08267857.1| radical SAM domain-containing protein [Brevundimonas diminuta ATCC 11568] gi|328844815|gb|EGF94379.1| radical SAM domain-containing protein [Brevundimonas diminuta ATCC 11568] Length = 211 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 121/209 (57%), Positives = 150/209 (71%), Gaps = 1/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS KE+FLT+QGEGG AGR AVF RF+GCNLWSG E+DR +A C FCDTDFVG+ G GG Sbjct: 3 YSAKEVFLTVQGEGGQAGRPAVFLRFAGCNLWSGLERDRATAICTFCDTDFVGVNGDGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ D +AD + W E + + V TGGEPL+Q+D LI AL+ RGFEIA+E+NGT+ Sbjct: 63 KFKTADLMADHVAGMWRGREGDPKLVVCTGGEPLMQLDTLLIDALHARGFEIAIESNGTL 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+GIDWIC+SPKA + GQELKLV+PQ P+ + DF+ F LQPMDGP Sbjct: 123 VAPEGIDWICISPKADAPVVQTSGQELKLVYPQPLAMPDRFESLDFQHFWLQPMDGPDQA 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT AI YC +P+WRLSVQTHK+IG+R Sbjct: 183 ANTAAAIEYCLTHPQWRLSVQTHKYIGVR 211 >gi|34498964|ref|NP_903179.1| hypothetical protein CV_3509 [Chromobacterium violaceum ATCC 12472] gi|34104813|gb|AAQ61170.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 211 Score = 255 bits (652), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 128/212 (60%), Positives = 149/212 (70%), Gaps = 2/212 (0%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y++KEIF TLQGEG AGR AVFCRF+GCNLWSGRE+DR A C+FCDTDFVG G Sbjct: 1 MTTYTVKEIFYTLQGEGRQAGRAAVFCRFAGCNLWSGREEDRAKAVCQFCDTDFVGA-GP 59 Query: 61 KGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GG+++ LA I +W Y V TGGEPLLQ+D LI AL+ +GFEIAVETN Sbjct: 60 DGGKFDGAAALAARIAAEWPKDAGGSPYVVCTGGEPLLQLDAELIGALHAQGFEIAVETN 119 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GT+ P G+DWICVSPKAG +LK + G ELKLV+PQ PE DF F LQPMDGP Sbjct: 120 GTVAAPAGLDWICVSPKAGAELKQRAGDELKLVYPQAAQMPETVADLDFGTFYLQPMDGP 179 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 L NT AI+YC +P+WRLSVQTHK + IR Sbjct: 180 ELAANTRAAIAYCMAHPQWRLSVQTHKVVDIR 211 >gi|295675134|ref|YP_003603658.1| Radical SAM domain protein [Burkholderia sp. CCGE1002] gi|295434977|gb|ADG14147.1| Radical SAM domain protein [Burkholderia sp. CCGE1002] Length = 210 Score = 255 bits (652), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 123/208 (59%), Positives = 151/208 (72%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G GG Sbjct: 3 YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62 Query: 64 RYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +Y D+L +I QW GE E R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG++ Sbjct: 63 KYRTPDELVAMIASQWPQGEGE-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP + Sbjct: 122 PVLDTIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPSRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 INTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|284028807|ref|YP_003378738.1| hypothetical protein Kfla_0827 [Kribbella flavida DSM 17836] gi|283808100|gb|ADB29939.1| conserved hypothetical protein [Kribbella flavida DSM 17836] Length = 211 Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 116/208 (55%), Positives = 149/208 (71%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y +KEIF TLQGEG HAGR AVFCRF+ CNLW+GRE+DR A C FCDTDFVG G GG Sbjct: 3 YKVKEIFYTLQGEGSHAGRPAVFCRFASCNLWTGREKDRARAICSFCDTDFVGTDGPGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + + LA +E+ W + R V TGGEPLLQ+D + AL++RGF +AVETNGT Sbjct: 63 KFASAEDLARAVEDAWPHDGHDQRMVVCTGGEPLLQLDADAVSALHERGFYVAVETNGTQ 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 PPQG+DW+CVSPK G +L + G ELKLV+PQ P + +FE F LQPMD P + Sbjct: 123 IPPQGLDWLCVSPKIGAELIVTSGDELKLVYPQAGGDPAQFEHLEFEHFRLQPMDSPDRQ 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +NT A+ YC ++P+W+LS+QTHK++GI Sbjct: 183 QNTAAAVEYCLKHPRWQLSLQTHKYLGI 210 >gi|13474945|ref|NP_106515.1| hypothetical protein msl8680 [Mesorhizobium loti MAFF303099] gi|14025701|dbj|BAB52301.1| msl8680 [Mesorhizobium loti MAFF303099] Length = 211 Score = 254 bits (650), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 123/208 (59%), Positives = 148/208 (71%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE DR A C FCDTDFVG+ G G Sbjct: 3 YAVKEIFYTLQGEGRNAGRAAVFCRFAGCNLWSGREGDRAKAFCGFCDTDFVGVDGPGGR 62 Query: 64 RYNVD-QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ QLA +E+ W R+ VLTGGEPLLQ+D L++AL+ FEIAVETNGTI Sbjct: 63 HFDTARQLALAVEQAWRGQGAGQRFVVLTGGEPLLQIDEELLEALHCLAFEIAVETNGTI 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDW+CVSPK L + G ELKLV+PQ+ PE++ FE LQPMDGP E Sbjct: 123 PTPAGIDWLCVSPKCNARLVVMAGDELKLVYPQIGAEPEHFEVLAFEHLLLQPMDGPERE 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A++YC NP+WRLS+QTHKF+GI Sbjct: 183 ANTAAAVAYCLANPRWRLSLQTHKFLGI 210 >gi|83859604|ref|ZP_00953124.1| hypothetical protein OA2633_06384 [Oceanicaulis alexandrii HTCC2633] gi|83851963|gb|EAP89817.1| hypothetical protein OA2633_06384 [Oceanicaulis alexandrii HTCC2633] Length = 209 Score = 254 bits (650), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 122/208 (58%), Positives = 151/208 (72%), Gaps = 3/208 (1%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KE+FLT+QGEGG GR AVF RF+GCNLWSG E+DR SA C+FCDTDFVG+ G GG Sbjct: 3 YSVKEMFLTVQGEGGQTGRPAVFLRFAGCNLWSGLERDRASAICQFCDTDFVGVDGVNGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + LAD + W G + Y V TGGEPLLQ+D PLI AL++ GF IAVETNGTI Sbjct: 63 KFKTAEALADKVASLWPGGGEP--YVVCTGGEPLLQLDAPLIDALHEAGFRIAVETNGTI 120 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + P+GIDW+CVSPK+ LK G ELKLV+PQ PE + G DF++F LQPMDGP Sbjct: 121 KAPEGIDWVCVSPKSTAPLKQTSGDELKLVYPQPEAMPELFSGLDFKQFRLQPMDGPDQM 180 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +N A YC Q+P+W LS+QTHK+I + Sbjct: 181 KNAQAAFEYCLQHPQWMLSLQTHKWINV 208 >gi|288942462|ref|YP_003444702.1| radical SAM domain-containing protein [Allochromatium vinosum DSM 180] gi|288897834|gb|ADC63670.1| radical SAM domain-containing protein [Allochromatium vinosum DSM 180] Length = 215 Score = 254 bits (649), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 127/212 (59%), Positives = 146/212 (68%), Gaps = 5/212 (2%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y +KE F TLQGEG AGR AVFCRFSGCNLWSGREQDR A CRFCDTDF G G GG Sbjct: 3 YWVKESFYTLQGEGAQAGRAAVFCRFSGCNLWSGREQDRDRAICRFCDTDFRGTDGEGGG 62 Query: 64 RY-NVDQLADLIEEQWITGE----KEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 RY + D LA+ + W TG + Y V TGGEPLLQ+D PLI AL+ GFE+AVET Sbjct: 63 RYRDADVLAEHLRALWPTGAGADASDRPYVVCTGGEPLLQLDAPLIDALHGSGFEVAVET 122 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178 NGT P G+DWICVSPKAG + G ELKL++PQ + PE + G F F LQPMDG Sbjct: 123 NGTRPAPPGLDWICVSPKAGATTVLIEGDELKLIYPQPGLEPERFEGLGFRHFFLQPMDG 182 Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P NT LA+ YC P+WRLS+QTHK++GI Sbjct: 183 PQSNANTRLAVDYCKARPRWRLSLQTHKWLGI 214 >gi|237745834|ref|ZP_04576314.1| organic radical activating enzyme [Oxalobacter formigenes HOxBLS] gi|229377185|gb|EEO27276.1| organic radical activating enzyme [Oxalobacter formigenes HOxBLS] Length = 234 Score = 254 bits (649), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 120/208 (57%), Positives = 146/208 (70%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIF TLQGEG GR AVFCRFSGCNLWSGREQDR A CRFCDTDFVG G +GG Sbjct: 26 YSVKEIFYTLQGEGARTGRPAVFCRFSGCNLWSGREQDRARAICRFCDTDFVGTSGERGG 85 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ ++LA +I W E RY V TGGEPLLQ+D PLI +++ GFEIA+ETNGTI Sbjct: 86 KFPEAEKLASVIISLWPREHAENRYVVFTGGEPLLQLDRPLIGIMHRAGFEIAIETNGTI 145 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+G+DW+CVSPK G L +K G ELK+V PQ + +Y F F +QPMDG E Sbjct: 146 PVPEGVDWVCVSPKVGSTLVVKSGDELKVVIPQAGQNLADYEDLSFSHFYVQPMDGENRE 205 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 N +AI C +NPKW+L +QTHK++ I Sbjct: 206 RNIKMAIDTCLKNPKWKLGLQTHKYLQI 233 >gi|323524432|ref|YP_004226585.1| Radical SAM domain-containing protein [Burkholderia sp. CCGE1001] gi|323381434|gb|ADX53525.1| Radical SAM domain protein [Burkholderia sp. CCGE1001] Length = 210 Score = 254 bits (649), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 121/208 (58%), Positives = 152/208 (73%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G GG Sbjct: 3 YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62 Query: 64 RYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +Y ++L +I QW GE + R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG++ Sbjct: 63 KYRTPEELVQMIASQWPEGEGQ-RFVVCTGGEPMLQIDAPLVDALHAAGFEIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP + Sbjct: 122 PVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSDYAKLDFEYFLVQPMDGPSRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 INTRLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|91781440|ref|YP_556646.1| hypothetical protein Bxe_A4406 [Burkholderia xenovorans LB400] gi|91685394|gb|ABE28594.1| Conserved hypothetical protein [Burkholderia xenovorans LB400] Length = 210 Score = 254 bits (649), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 123/208 (59%), Positives = 150/208 (72%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G GG Sbjct: 3 YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +Y + L +I QW GE E R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG++ Sbjct: 63 KYRTAEDLVRMIASQWPQGEGE-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + IDWICVSPKA L + G ELK+V PQ N Y DFE F +QPMDGP E Sbjct: 122 PVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSEYAKLDFEYFLVQPMDGPSRE 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 INTRLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|296161371|ref|ZP_06844178.1| Radical SAM domain protein [Burkholderia sp. Ch1-1] gi|295888357|gb|EFG68168.1| Radical SAM domain protein [Burkholderia sp. Ch1-1] Length = 210 Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 122/208 (58%), Positives = 150/208 (72%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G GG Sbjct: 3 YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +Y + L +I QW GE E R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG++ Sbjct: 63 KYRTAEDLVRMIASQWPQGEGE-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + IDWICVSPKA L + G ELK+V PQ N Y DFE F +QPMDGP + Sbjct: 122 PVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSEYAKLDFEYFLVQPMDGPSRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 INTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|258542252|ref|YP_003187685.1| hypothetical protein APA01_11580 [Acetobacter pasteurianus IFO 3283-01] gi|256633330|dbj|BAH99305.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01] gi|256636389|dbj|BAI02358.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03] gi|256639442|dbj|BAI05404.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07] gi|256642498|dbj|BAI08453.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22] gi|256645553|dbj|BAI11501.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26] gi|256648606|dbj|BAI14547.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32] gi|256651659|dbj|BAI17593.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654650|dbj|BAI20577.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12] Length = 216 Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 126/216 (58%), Positives = 148/216 (68%), Gaps = 12/216 (5%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIFLTLQGEGG AGR AVFCRF+GCNLWSGRE DR A C+FCDTDF+G G GG Sbjct: 3 YSVKEIFLTLQGEGGQAGRAAVFCRFTGCNLWSGREADRDKAICQFCDTDFIGTDGINGG 62 Query: 64 RY-NVDQLADLIEEQW--------ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114 ++ N +LA I W TG+K V TGGEPLLQ+D LI A++ +GF I Sbjct: 63 KFENAAELAATIASFWPQPTEDTKATGQK---LVVFTGGEPLLQLDTALIDAMHAQGFSI 119 Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174 AVE+NGT+ P+GIDW+C+SPKAG +L K G ELKLVFPQ + P DF+ F LQ Sbjct: 120 AVESNGTVMAPEGIDWLCISPKAGAELVQKAGTELKLVFPQPGIDPAALENLDFQHFWLQ 179 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 PMDGP NT AI YC +P W LS+QTHK IGI Sbjct: 180 PMDGPQQAVNTQAAIEYCLAHPLWGLSLQTHKLIGI 215 >gi|187922325|ref|YP_001893967.1| radical SAM protein [Burkholderia phytofirmans PsJN] gi|187713519|gb|ACD14743.1| Radical SAM domain protein [Burkholderia phytofirmans PsJN] Length = 210 Score = 253 bits (646), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 122/208 (58%), Positives = 149/208 (71%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G G Sbjct: 3 YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGD 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +Y D L +I QW GE E R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG++ Sbjct: 63 KYRTADDLVKMIAAQWPEGEGE-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + IDWICVSPKA L + G ELK+V PQ N Y DFE F +QPMDGP + Sbjct: 122 PVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSEYAKLDFEYFLVQPMDGPSRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 LNTRLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|300311525|ref|YP_003775617.1| organic radical activating enzyme protein [Herbaspirillum seropedicae SmR1] gi|300074310|gb|ADJ63709.1| organic radical activating enzyme protein [Herbaspirillum seropedicae SmR1] Length = 229 Score = 253 bits (645), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 122/208 (58%), Positives = 148/208 (71%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YSIKEIF TLQGEG HAGR AVFCRFSGCNLW+GRE+DR+ A C+FCDTDFVG G GG Sbjct: 21 YSIKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGREEDRVRAICQFCDTDFVGTDGENGG 80 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + +LA I+ W +Y V TGGEPLLQ+D LI+A++ GFEIA+ETNGTI Sbjct: 81 KFKSPAELAAKIDSLWPARYAPSKYVVFTGGEPLLQLDAALIEAMHAVGFEIAIETNGTI 140 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + P G+DWICVSPK G +LK++ G ELK+V PQ + Y DF+ F LQPMDG Sbjct: 141 DVPDGVDWICVSPKMGSELKVRRGSELKVVVPQPGQPLDEYEKLDFQHFLLQPMDGLQAA 200 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI NPKW+LS+QTHK + I Sbjct: 201 ANTRLAIEMVKNNPKWKLSIQTHKLLNI 228 >gi|238028936|ref|YP_002913167.1| hypothetical protein bglu_1g34010 [Burkholderia glumae BGR1] gi|237878130|gb|ACR30463.1| Hypothetical protein bglu_1g34010 [Burkholderia glumae BGR1] Length = 210 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 122/208 (58%), Positives = 150/208 (72%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR SA CRFCDTDFVG G GG Sbjct: 3 YTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDSAVCRFCDTDFVGTDGENGG 62 Query: 64 RYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ +L AD + W GE R+ V TGGEP+LQ+D PL+ AL+ RGFEIA+ETNG++ Sbjct: 63 KFRTPELLADQVAALWPAGEAH-RFVVCTGGEPMLQLDQPLVDALHARGFEIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP E Sbjct: 122 PVLDTIDWICVSPKADAPLVVTRGHELKVVIPQDNQRLADYARLDFEHFLVQPMDGPSRE 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 LNTRLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|20804093|emb|CAD31296.1| HYPOTHETICAL CONSERVED PROTEIN [Mesorhizobium loti R7A] Length = 211 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 121/208 (58%), Positives = 145/208 (69%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE DR A C FCDTDFVG+ G GG Sbjct: 3 YAVKEIFYTLQGEGRNAGRAAVFCRFAGCNLWSGREGDRARAFCEFCDTDFVGVDGPGGG 62 Query: 64 RYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + Q A +E+ W R VLTGGEPLLQ+D L++AL+ FEIAVETNGTI Sbjct: 63 HFATAQEFALAVEQAWRGSGTRQRLVVLTGGEPLLQIDEELLEALHSLAFEIAVETNGTI 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 GIDW+CVSPK L + G ELKLV+P++ PE++ FE LQPMDGP E Sbjct: 123 PTLAGIDWLCVSPKCNARLVVMAGDELKLVYPRIGAEPEHFEVLAFEHLLLQPMDGPERE 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A++YC NP+WRLS+QTHKF+GI Sbjct: 183 ANTAAAVAYCLANPRWRLSLQTHKFLGI 210 >gi|307728151|ref|YP_003905375.1| Radical SAM domain-containing protein [Burkholderia sp. CCGE1003] gi|307582686|gb|ADN56084.1| Radical SAM domain protein [Burkholderia sp. CCGE1003] Length = 210 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 120/208 (57%), Positives = 153/208 (73%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G GG Sbjct: 3 YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +Y + ++L +I QW GE + R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG++ Sbjct: 63 KYRSAEELVRMIASQWPQGEGQ-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + IDWICVSPKA L + G ELK+V PQ N +Y DF+ F +QPMDGP + Sbjct: 122 PVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSDYAKLDFQYFLVQPMDGPSRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 INTRLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|153876026|ref|ZP_02003554.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152067510|gb|EDN66446.1| conserved hypothetical protein [Beggiatoa sp. PS] Length = 209 Score = 252 bits (643), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 121/208 (58%), Positives = 151/208 (72%), Gaps = 3/208 (1%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIF +LQGEG GR A+FCRF+GCNLWSGRE+DR A C+FCDT+F+G G GG Sbjct: 3 YSVKEIFYSLQGEGHQTGRAAIFCRFAGCNLWSGREEDRSIASCQFCDTNFIGTNGQNGG 62 Query: 64 RYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ Q LA+ + I K + TGGEPLLQ+D PLI+A + GFEIA+ETNGT+ Sbjct: 63 KFTSAQALAEKVAT--IGMMKHFPLIICTGGEPLLQLDEPLIKAFHHIGFEIAIETNGTL 120 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDWICVSPK LK++ G ELKLVFPQ N PE + FDF+ F LQPMDGP L+ Sbjct: 121 PAPPNIDWICVSPKGNAPLKLQTGNELKLVFPQPNAPPELFEQFDFQYFFLQPMDGPELK 180 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +NT LA+ YC ++P+WRLS+QTHK +GI Sbjct: 181 KNTQLALRYCLEHPQWRLSLQTHKLLGI 208 >gi|312797586|ref|YP_004030508.1| Queuosine biosynthesis protein QueE [Burkholderia rhizoxinica HKI 454] gi|312169361|emb|CBW76364.1| Queuosine biosynthesis protein QueE [Burkholderia rhizoxinica HKI 454] Length = 263 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 122/210 (58%), Positives = 147/210 (70%), Gaps = 3/210 (1%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGREQDR A CRFCDTDFVG G GG Sbjct: 53 YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREQDRADAVCRFCDTDFVGTDGENGG 112 Query: 64 RY-NVDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 +Y + D L I W GE R+ V TGGEP+LQ+D LI AL++ F IAVETNG Sbjct: 113 KYRDADALVAKIASLWPPGEAAAQYRFVVCTGGEPMLQLDAALIDALHRERFVIAVETNG 172 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T+ GIDW+CVSPKAG + + G ELK+V PQ N Y DFE F +QPMDGP Sbjct: 173 TLPVLPGIDWVCVSPKAGSSIVVTRGNELKVVIPQDNQPLSEYARLDFEHFLVQPMDGPS 232 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E NT LA+ +C ++P+WRLS+QTHK++ I Sbjct: 233 RELNTKLAVDWCKRHPQWRLSMQTHKYLNI 262 >gi|323135766|ref|ZP_08070849.1| hypothetical protein Met49242DRAFT_0236 [Methylocystis sp. ATCC 49242] gi|322398857|gb|EFY01376.1| hypothetical protein Met49242DRAFT_0236 [Methylocystis sp. ATCC 49242] Length = 210 Score = 251 bits (642), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 120/209 (57%), Positives = 147/209 (70%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y +KE F T+QGEG +AGRVAVFCRF+GCNLWSGRE+DR A C FCDT+F G+ G GG Sbjct: 3 YFVKEAFRTVQGEGVNAGRVAVFCRFAGCNLWSGREEDRAEAACNFCDTEFTGVDGEGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ +LAD + W + E R+ VLTGGEP+LQVD L+ AL+ GFEIA+E+NGTI Sbjct: 63 KFPGARELADHLVAIW-GADDEDRFIVLTGGEPMLQVDPALVDALHNEGFEIAIESNGTI 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 GIDWICVSPKAG + G ELKLV+PQ V P + DF F LQPMDGP + Sbjct: 122 AAAPGIDWICVSPKAGAPIVQTSGSELKLVYPQPGVDPATFERLDFRHFLLQPMDGPEIV 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT A+ YC +P+WRLS+QTHK IG+R Sbjct: 182 RNTKAAVDYCLAHPRWRLSLQTHKMIGVR 210 >gi|329851462|ref|ZP_08266219.1| hypothetical protein ABI_43030 [Asticcacaulis biprosthecum C19] gi|328840308|gb|EGF89880.1| hypothetical protein ABI_43030 [Asticcacaulis biprosthecum C19] Length = 210 Score = 251 bits (642), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 120/210 (57%), Positives = 144/210 (68%), Gaps = 1/210 (0%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +YS KEIFLTLQGEGG AGRV VF RF+GCNLWSGREQDR +A C FCDTDFVG G G Sbjct: 1 MYSFKEIFLTLQGEGGQAGRVNVFARFAGCNLWSGREQDRATAACDFCDTDFVGTDGENG 60 Query: 63 GRYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 GR+ + ++ W G G+ V TGGEPLLQ+D LI A+ G+ IAVETNGT Sbjct: 61 GRFPTPADVVAALDAVWGEGRAAGKAVVFTGGEPLLQLDSDLIAAVKAAGYFIAVETNGT 120 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 ++ P GIDW+CVSPK L GQELKLV+PQ NV P +++ FERF LQP D P Sbjct: 121 LKAPAGIDWVCVSPKGQNRLHQTSGQELKLVWPQENVDPSDFLEMQFERFYLQPKDNPRQ 180 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT I YC +P+WR+SVQTHK +G++ Sbjct: 181 AANTQAVIDYCLLHPQWRMSVQTHKLVGLK 210 >gi|170694006|ref|ZP_02885162.1| conserved hypothetical protein [Burkholderia graminis C4D1M] gi|170141078|gb|EDT09250.1| conserved hypothetical protein [Burkholderia graminis C4D1M] Length = 210 Score = 251 bits (640), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 120/208 (57%), Positives = 150/208 (72%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G GG Sbjct: 3 YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRADAVCRFCDTDFVGTDGENGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +Y L +I QW GE + R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG++ Sbjct: 63 KYRTAADLVQMIASQWPEGEGQ-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + IDWICVSPKA L + G ELK+V PQ N +Y DF+ F +QPMDGP + Sbjct: 122 PVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSDYAKLDFDYFLVQPMDGPSRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 INTRLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|221201867|ref|ZP_03574904.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] gi|221207627|ref|ZP_03580635.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221172473|gb|EEE04912.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221178287|gb|EEE10697.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] Length = 210 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 120/208 (57%), Positives = 149/208 (71%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G GG Sbjct: 3 YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAQAVCRFCDTDFVGTDGENGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + D L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG++ Sbjct: 63 KFKDADALVATIASLWPDGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP + Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPSRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 LNTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|114328969|ref|YP_746126.1| queuosine biosynthesis protein QueE [Granulibacter bethesdensis CGDNIH1] gi|114317143|gb|ABI63203.1| queuosine biosynthesis protein QueE [Granulibacter bethesdensis CGDNIH1] Length = 220 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 122/207 (58%), Positives = 143/207 (69%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR AVFCRF+GCNLWSGRE+DR A C FCDTDF+G+ G GG Sbjct: 13 YTVKEIFLTLQGEGIHAGRPAVFCRFAGCNLWSGREEDRQMAGCTFCDTDFIGMDGENGG 72 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 RY G E R+ VLTGGEPLLQVD LI AL++ F+IAVETNGT Sbjct: 73 RYPDAASLARAIAACWQGGAEHRFVVLTGGEPLLQVDAALIDALHEAHFQIAVETNGTQP 132 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 P G+DWICVSPKA L + GG ELKLVFPQ + PE + +F F LQP+D + Sbjct: 133 APAGLDWICVSPKADNPLVLTGGDELKLVFPQPDAPPERFEALNFRHFLLQPLDDSRRAD 192 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 +T AI YC +P+WRLSVQTHK +GI Sbjct: 193 HTRAAIEYCLHHPRWRLSVQTHKTLGI 219 >gi|296115261|ref|ZP_06833901.1| hypothetical protein GXY_05748 [Gluconacetobacter hansenii ATCC 23769] gi|295978164|gb|EFG84902.1| hypothetical protein GXY_05748 [Gluconacetobacter hansenii ATCC 23769] Length = 211 Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 121/208 (58%), Positives = 141/208 (67%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG AGR AVFCRF+GCNLWSGRE DR A CRFCDTDF+G G GG Sbjct: 3 YTVKEIFPTLQGEGSQAGRAAVFCRFAGCNLWSGREIDRDDATCRFCDTDFIGTDGMGGG 62 Query: 64 RYNVDQLADLIEEQWITG-EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ + + V TGGEPLLQ+D L+ A++ RGF IAVETNGTI Sbjct: 63 RFADAASLADAIAAAWPAASRRDAFVVFTGGEPLLQLDAALVAAMHARGFFIAVETNGTI 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDWIC+SPKAG L G ELKLVFPQ ++ PE G DF +F LQPMDGP Sbjct: 123 RAPDGIDWICMSPKAGAPLVQTSGHELKLVFPQPDLMPEQVAGLDFAQFWLQPMDGPERV 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT+ A+ YC +P+WRLS+QTHK IGI Sbjct: 183 SNTSHAVEYCMAHPQWRLSLQTHKLIGI 210 >gi|218529375|ref|YP_002420191.1| hypothetical protein Mchl_1382 [Methylobacterium chloromethanicum CM4] gi|240137705|ref|YP_002962176.1| hypothetical protein MexAM1_META1p1004 [Methylobacterium extorquens AM1] gi|218521678|gb|ACK82263.1| conserved hypothetical protein [Methylobacterium chloromethanicum CM4] gi|240007673|gb|ACS38899.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 212 Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 127/210 (60%), Positives = 147/210 (70%), Gaps = 4/210 (1%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE+F TLQGEG AGR AVFCRFSGCNLWSGRE+DR A CRFCDTDFVG+ G GG Sbjct: 3 YAVKELFHTLQGEGAQAGRAAVFCRFSGCNLWSGREEDRAGAACRFCDTDFVGMDGEGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ + + LAD I W G RY V TGGEPLLQ+D LI A++ RGFE+AVETNGT+ Sbjct: 63 RFASAEILADAIAATWAGGTAN-RYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGTL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFSLQPMDGPF 180 P GIDWICVSPKAG L G ELKLVFPQ +PE + F LQPMDGP Sbjct: 122 PAPPGIDWICVSPKAGNPLVQTSGDELKLVFPQAEAEAAPERFSDLPFRHHFLQPMDGPD 181 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +T A++YC N +WRLS+QTHK IGI Sbjct: 182 AAAHTAAAVAYCRSNARWRLSLQTHKIIGI 211 >gi|163850651|ref|YP_001638694.1| hypothetical protein Mext_1221 [Methylobacterium extorquens PA1] gi|163662256|gb|ABY29623.1| conserved hypothetical protein [Methylobacterium extorquens PA1] Length = 212 Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 127/210 (60%), Positives = 147/210 (70%), Gaps = 4/210 (1%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE+F TLQGEG AGR AVFCRFSGCNLWSGRE+DR A CRFCDTDFVG+ G GG Sbjct: 3 YAVKELFHTLQGEGAQAGRAAVFCRFSGCNLWSGREEDRAGAACRFCDTDFVGMDGEGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ + + LAD I W G RY V TGGEPLLQ+D LI A++ RGFE+AVETNGT+ Sbjct: 63 RFASAEILADAIAATWAGGTSN-RYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGTL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFSLQPMDGPF 180 P GIDWICVSPKAG L G ELKLVFPQ +PE + F LQPMDGP Sbjct: 122 PAPPGIDWICVSPKAGNPLVQTSGDELKLVFPQAEAEAAPERFSDLPFRHHFLQPMDGPD 181 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +T A++YC N +WRLS+QTHK IGI Sbjct: 182 AAAHTAAAVAYCRSNARWRLSLQTHKIIGI 211 >gi|239817064|ref|YP_002945974.1| hypothetical protein Vapar_4095 [Variovorax paradoxus S110] gi|239803641|gb|ACS20708.1| conserved hypothetical protein [Variovorax paradoxus S110] Length = 212 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 124/210 (59%), Positives = 147/210 (70%), Gaps = 2/210 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIF TLQGEGG AG AVFCRF+GCNLW+GRE+DR +A CRFCDTDFVG GT GG Sbjct: 3 YSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWTGREEDRATAVCRFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ N + LAD I QW + E R VLTGGEPLLQVD L+ AL+ R F IAVE+NGT+ Sbjct: 63 KFKNAELLADTIAAQWPAEDAEHRLVVLTGGEPLLQVDAALVDALHARRFRIAVESNGTV 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-DFERFSLQPMDGPFL 181 P+GIDW+C+SPKAG + GQELKLV+ Q + +F LQPMDGP Sbjct: 123 AAPEGIDWLCISPKAGAPWVQQRGQELKLVWRQTEFDLDTMARTGEFTHRFLQPMDGPDR 182 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT L I+ C ++P WRLSVQTHK GIR Sbjct: 183 VANTELCIAECMRHPAWRLSVQTHKITGIR 212 >gi|145589599|ref|YP_001156196.1| radical SAM domain-containing protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048005|gb|ABP34632.1| Radical SAM domain protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 217 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 122/217 (56%), Positives = 157/217 (72%), Gaps = 8/217 (3%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y++KEIF TLQGEG HAGR AVFCRF+GCNLWSGRE+DR +A C+FCDTDFVG G G Sbjct: 1 MYTVKEIFPTLQGEGAHAGRAAVFCRFAGCNLWSGREEDRATAICQFCDTDFVGSDGLGG 60 Query: 63 GRY-NVDQLADLIEEQW--ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 G++ + LA+ IE W + + RY V TGGEPLLQ+D LI+ L+K+GFE+A+ETN Sbjct: 61 GKFETANDLANAIELAWKSTSAGPQQRYVVFTGGEPLLQLDEVLIEVLHKKGFEVAIETN 120 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV-NVSPENYIG----FDFERFSLQ 174 GT++ P+G+DW+CVSPKAG +L + E+KLV PQ + S E +G D+ LQ Sbjct: 121 GTLKVPKGVDWVCVSPKAGAELIVLQANEMKLVVPQNGHESLEQLMGRFEKMDYRNRFLQ 180 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 PMDGP L+ NT LA+ C + P WRLS+Q+HK IGIR Sbjct: 181 PMDGPNLKSNTELAVGLCQKRPLWRLSIQSHKLIGIR 217 >gi|33593629|ref|NP_881273.1| hypothetical protein BP2659 [Bordetella pertussis Tohama I] gi|33563702|emb|CAE42935.1| conserved hypothetical protein [Bordetella pertussis Tohama I] Length = 210 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 115/207 (55%), Positives = 140/207 (67%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KE+F TLQGEG AGR AVFCRF+GCNLW+GRE DR A C FCDTDFVG G GG Sbjct: 3 YSVKELFKTLQGEGAQAGRAAVFCRFAGCNLWTGRESDRAGAACTFCDTDFVGTDGQGGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 ++ RY V TGGEPLLQ+D L+QA++ +GF +A+ETNGT+ Sbjct: 63 KFADAAGLADAIAACWGEHPADRYVVFTGGEPLLQLDEALLQAVHAQGFTVAIETNGTLP 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 PP GIDWICVSPK + ++ G ELKLVFPQ + PE + FE F LQPMDGP Sbjct: 123 PPPGIDWICVSPKGRAPVVVERGHELKLVFPQADARPEAFAHLAFEHFFLQPMDGPARAA 182 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 +T A+ YC +P+WRLS+QTHK+IGI Sbjct: 183 HTTQAVQYCLDHPQWRLSLQTHKYIGI 209 >gi|325518103|gb|EGC97893.1| organic radical activating enzyme-like protein [Burkholderia sp. TJI49] Length = 210 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 120/208 (57%), Positives = 149/208 (71%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G GG Sbjct: 3 YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + D L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG++ Sbjct: 63 KFKDADALVATIAGLWPDGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP + Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPSRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 LNTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|312113885|ref|YP_004011481.1| hypothetical protein Rvan_1111 [Rhodomicrobium vannielii ATCC 17100] gi|311219014|gb|ADP70382.1| hypothetical protein Rvan_1111 [Rhodomicrobium vannielii ATCC 17100] Length = 213 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 117/213 (54%), Positives = 145/213 (68%), Gaps = 4/213 (1%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y++KEIF TLQGEG GR AVF RF+GCNLW+G+ +D+ A CRFCDTDFVG G G Sbjct: 1 MYTVKEIFPTLQGEGAQVGRAAVFLRFAGCNLWTGQHKDKSKAFCRFCDTDFVGYDGPNG 60 Query: 63 GRY-NVDQLADLIEEQW---ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 G++ DQLAD++ W G+ Y V TGGEP LQ+D P+I AL KRGF +A+E+ Sbjct: 61 GKFETADQLADIVLGMWNSLTKGKTASPYVVCTGGEPTLQLDTPMIDALKKRGFTVAIES 120 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178 NGT P+G+DWIC+SPKAG L + G ELKLV+PQ P+ + FE F LQPMDG Sbjct: 121 NGTRPAPRGLDWICISPKAGVPLAQREGNELKLVYPQTGALPQLFERLKFEHFFLQPMDG 180 Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 P +N AI YC NP WRLS+Q HK +GIR Sbjct: 181 PQHRDNIEAAIRYCMANPPWRLSMQMHKLVGIR 213 >gi|221214677|ref|ZP_03587647.1| conserved hypothetical protein [Burkholderia multivorans CGD1] gi|221165567|gb|EED98043.1| conserved hypothetical protein [Burkholderia multivorans CGD1] Length = 210 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 120/208 (57%), Positives = 149/208 (71%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G GG Sbjct: 3 YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAQAVCRFCDTDFVGTDGENGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + D L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG++ Sbjct: 63 KFKDADALVATIAGLWPDGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP + Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPSRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 LNTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|330818676|ref|YP_004362381.1| hypothetical protein bgla_1g38230 [Burkholderia gladioli BSR3] gi|327371069|gb|AEA62425.1| hypothetical protein bgla_1g38230 [Burkholderia gladioli BSR3] Length = 210 Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 118/208 (56%), Positives = 152/208 (73%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR +A CRFCDTDFVG G GG Sbjct: 3 YTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRETAVCRFCDTDFVGTDGENGG 62 Query: 64 RYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ +QLA ++ W GE R+ V TGGEP+LQ+D PL+ AL+ +GFEIA+ETNG++ Sbjct: 63 KFKTPEQLAAMVASLWPEGEA-NRFVVCTGGEPMLQLDQPLVDALHAQGFEIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + IDWICVSPKA L + G ELK+V PQ N +Y DF+ F +QPMDGP + Sbjct: 122 PVLETIDWICVSPKADAPLVVTKGHELKVVVPQDNQRLADYARLDFDYFLVQPMDGPSRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 INTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|114569269|ref|YP_755949.1| radical SAM domain-containing protein [Maricaulis maris MCS10] gi|114339731|gb|ABI65011.1| Radical SAM domain protein [Maricaulis maris MCS10] Length = 209 Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 123/207 (59%), Positives = 143/207 (69%), Gaps = 3/207 (1%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KE FLT+QGEG AGR AVF RFSGCNLWSGREQDR A C FCDTDFVG+ G GG Sbjct: 3 YSVKERFLTVQGEGAQAGRPAVFLRFSGCNLWSGREQDRHKAVCNFCDTDFVGMDGPGGG 62 Query: 64 RYNVD-QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ L D + E W G + C TGGEPLLQ+D LI AL+ RGFEIAVETNGT+ Sbjct: 63 RFKTAVSLVDAVAELWPGGGRPLVVC--TGGEPLLQLDTSLIDALHARGFEIAVETNGTV 120 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDWI VSPK + G ELKLV+PQ + P + +DF+RFSLQPMDGP + Sbjct: 121 RAPDGIDWITVSPKGTAPVVQTSGHELKLVYPQPELDPTAFEDWDFKRFSLQPMDGPQMM 180 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIG 209 EN A YC +P+W LS+QTHK+IG Sbjct: 181 ENAQAAFDYCLAHPQWSLSLQTHKWIG 207 >gi|33596287|ref|NP_883930.1| hypothetical protein BPP1653 [Bordetella parapertussis 12822] gi|33602051|ref|NP_889611.1| hypothetical protein BB3075 [Bordetella bronchiseptica RB50] gi|33566056|emb|CAE36954.1| conserved hypothetical protein [Bordetella parapertussis] gi|33576489|emb|CAE33567.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 210 Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 115/207 (55%), Positives = 140/207 (67%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KE+F TLQGEG AGR AVFCRF+GCNLW+GRE DR A C FCDTDFVG G GG Sbjct: 3 YSVKELFKTLQGEGAQAGRAAVFCRFAGCNLWTGRESDRAGAACTFCDTDFVGTDGQGGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 ++ RY V TGGEPLLQ+D L+QA++ +GF +A+ETNGT+ Sbjct: 63 KFADAAGLADAIAACWGEHPADRYVVFTGGEPLLQLDEALLQAVHAQGFTVAIETNGTLP 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 PP GIDWICVSPK + ++ G ELKLVFPQ + PE + FE F LQPMDGP Sbjct: 123 PPPGIDWICVSPKGRAPVVVERGHELKLVFPQADARPEAFAHLAFEHFFLQPMDGPARAA 182 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 +T A+ YC +P+WRLS+QTHK+IGI Sbjct: 183 HTAQAVQYCLDHPQWRLSLQTHKYIGI 209 >gi|85813929|emb|CAF31558.1| putative fortimicin production protein [Micromonospora olivasterospora] Length = 212 Score = 248 bits (632), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 119/211 (56%), Positives = 143/211 (67%), Gaps = 3/211 (1%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y +KEIF TLQGEG HAGR AVFCRF+ CNLW+GRE++R A C+FCDTDFVG G G Sbjct: 1 MYRVKEIFYTLQGEGSHAGRPAVFCRFTSCNLWTGREEERHRAICQFCDTDFVGTDGPGG 60 Query: 63 GRYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GR+ GE R Y V TGGEPLLQ+D ++AL+ GFE+AVETN Sbjct: 61 GRFATAAELAAAVVAAWRGEDHPRSRPYVVCTGGEPLLQLDEAAVRALHDAGFEVAVETN 120 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GT P GIDW+CVSPKAG DL + G +LKLV+PQ P + G DF F LQPMDGP Sbjct: 121 GTRPAPPGIDWVCVSPKAGADLVLTRGDDLKLVYPQPGAEPARFEGLDFAHFMLQPMDGP 180 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A+ YC ++P+WRLS+QTHK+IGI Sbjct: 181 DRVANTEAAVRYCLEHPQWRLSLQTHKYIGI 211 >gi|83749823|ref|ZP_00946794.1| Queuosine biosynthesis protein QueE [Ralstonia solanacearum UW551] gi|207723445|ref|YP_002253844.1| organic radical activating enzyme protein [Ralstonia solanacearum MolK2] gi|207743201|ref|YP_002259593.1| organic radical activating enzyme protein [Ralstonia solanacearum IPO1609] gi|83723503|gb|EAP70710.1| Queuosine biosynthesis protein QueE [Ralstonia solanacearum UW551] gi|206588646|emb|CAQ35609.1| organic radical activating enzyme protein [Ralstonia solanacearum MolK2] gi|206594598|emb|CAQ61525.1| organic radical activating enzyme protein [Ralstonia solanacearum IPO1609] Length = 224 Score = 248 bits (632), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 126/210 (60%), Positives = 150/210 (71%), Gaps = 2/210 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT GG Sbjct: 15 YAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRAAAVCQFCDTDFVGTDGTLGG 74 Query: 64 RY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 +Y D LADL+ QW G+ V TGGEPLLQ+D PLI AL+ RGFEIAVETNGT Sbjct: 75 KYATADALADLVAAQWPADATGGQPLVVCTGGEPLLQLDRPLIDALHARGFEIAVETNGT 134 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + P+GIDW+CVSPK G +L + G ELK+V PQ + Y DF F LQPMDGP Sbjct: 135 VAVPEGIDWVCVSPKMGAELVVTRGDELKVVIPQPGQDLDAYERLDFRHFFLQPMDGPLA 194 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT LA+ C + P+W LS+QTHK +GIR Sbjct: 195 RQNTALAVELCQRRPRWHLSLQTHKMLGIR 224 >gi|304320027|ref|YP_003853670.1| hypothetical protein PB2503_02257 [Parvularcula bermudensis HTCC2503] gi|303298930|gb|ADM08529.1| hypothetical protein PB2503_02257 [Parvularcula bermudensis HTCC2503] Length = 213 Score = 247 bits (631), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 121/207 (58%), Positives = 140/207 (67%), Gaps = 2/207 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y+IKE + TLQGEG AGR AVF RF+GCNLWSGRE DR A CRFCDTDFVG G GG Sbjct: 8 YAIKECYYTLQGEGAQAGRAAVFLRFAGCNLWSGREIDREEAICRFCDTDFVGTDGPGGG 67 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R+ ++LA + W G Y V TGGEPLLQ+D PLI AL+ GFEI VETNGTI Sbjct: 68 RFVAEELAAHVASFWPGGGSP--YVVATGGEPLLQLDSPLIDALHDEGFEIGVETNGTIA 125 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 P G+DWICVSPK+ +L G ELKLVFPQ + P+ + G F+ F LQPMDGP+ Sbjct: 126 APAGLDWICVSPKSTAELVQTEGDELKLVFPQSDAPPDQFSGLAFDHFFLQPMDGPYQSI 185 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 + YC NP WRLS+QTHK IGI Sbjct: 186 AIATTVDYCRANPLWRLSLQTHKLIGI 212 >gi|167834987|ref|ZP_02461870.1| hypothetical protein Bpse38_00765 [Burkholderia thailandensis MSMB43] Length = 210 Score = 247 bits (631), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 119/208 (57%), Positives = 148/208 (71%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR A CRFCDTDFVG G GG Sbjct: 3 YTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDGAVCRFCDTDFVGTDGENGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + LA+ I W GE R+ V TGGEP+LQ+D PL+ AL+ GF IA+ETNG++ Sbjct: 63 KFKDAASLAEKIASLWPAGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP E Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQHLADYAKLDFEHFLVQPMDGPSRE 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 LNTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|254560274|ref|YP_003067369.1| hypothetical protein METDI1804 [Methylobacterium extorquens DM4] gi|254267552|emb|CAX23394.1| conserved hypothetical protein [Methylobacterium extorquens DM4] Length = 212 Score = 247 bits (630), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 126/210 (60%), Positives = 146/210 (69%), Gaps = 4/210 (1%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE+F TLQGEG AGR AVFCRFSGCNLWSGRE+DR A CRFCDTDFVG+ G GG Sbjct: 3 YAVKELFHTLQGEGAQAGRAAVFCRFSGCNLWSGREEDRAGAACRFCDTDFVGMDGEGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ + + LA I W G RY V TGGEPLLQ+D LI A++ RGFE+AVETNGT+ Sbjct: 63 RFASAEILAGAIAATWAGGTAN-RYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGTL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFSLQPMDGPF 180 P GIDWICVSPKAG L G ELKLVFPQ +PE + F LQPMDGP Sbjct: 122 PAPPGIDWICVSPKAGNPLVQTSGDELKLVFPQAEAEAAPERFSDLPFRHHFLQPMDGPD 181 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +T A++YC N +WRLS+QTHK IGI Sbjct: 182 AAAHTAAAVAYCRSNARWRLSLQTHKIIGI 211 >gi|103486840|ref|YP_616401.1| hypothetical protein Sala_1354 [Sphingopyxis alaskensis RB2256] gi|98976917|gb|ABF53068.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256] Length = 210 Score = 247 bits (630), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 120/209 (57%), Positives = 142/209 (67%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIFLTLQGEG AGR AVFCRF+GCNLW+GREQDR A CRFCDTDFVG GT G Sbjct: 3 YSVKEIFLTLQGEGAQAGRRAVFCRFAGCNLWTGREQDRAKAICRFCDTDFVGTDGTLGA 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +Y + LAD+I E W G + RY VLTGGEP+LQVD LI AL+ RGF IA+E+NGT+ Sbjct: 63 KYRDAAALADVIAESWGPGSDD-RYVVLTGGEPMLQVDDALIDALHARGFTIAIESNGTL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+ IDWICVSPKAG +L G ELKLV+PQ DF +QP+D Sbjct: 122 PIPRSIDWICVSPKAGSELVQSSGDELKLVWPQPGSDVAKLAALDFRHLLVQPLDDRNAA 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 N I +P+WRLS+QTHK +G+R Sbjct: 182 ANVQACIDLVMADPRWRLSLQTHKSLGLR 210 >gi|115353224|ref|YP_775063.1| organic radical activating enzyme-like protein [Burkholderia ambifaria AMMD] gi|170703437|ref|ZP_02894209.1| organic radical activating enzyme-like protein [Burkholderia ambifaria IOP40-10] gi|171319449|ref|ZP_02908554.1| organic radical activating enzyme-like protein [Burkholderia ambifaria MEX-5] gi|172062096|ref|YP_001809748.1| organic radical activating enzyme-like protein [Burkholderia ambifaria MC40-6] gi|115283212|gb|ABI88729.1| organic radical activating enzyme-like protein [Burkholderia ambifaria AMMD] gi|170131652|gb|EDT00208.1| organic radical activating enzyme-like protein [Burkholderia ambifaria IOP40-10] gi|171095341|gb|EDT40322.1| organic radical activating enzyme-like protein [Burkholderia ambifaria MEX-5] gi|171994613|gb|ACB65532.1| organic radical activating enzyme-like protein [Burkholderia ambifaria MC40-6] Length = 210 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 119/208 (57%), Positives = 149/208 (71%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G GG Sbjct: 3 YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + + L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG++ Sbjct: 63 KFKDAEALVATIAGLWPDGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP + Sbjct: 122 PVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPSRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 LNTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|161526284|ref|YP_001581296.1| organic radical activating enzyme-like protein [Burkholderia multivorans ATCC 17616] gi|189349002|ref|YP_001944630.1| hypothetical protein BMULJ_00116 [Burkholderia multivorans ATCC 17616] gi|160343713|gb|ABX16799.1| organic radical activating enzyme-like protein [Burkholderia multivorans ATCC 17616] gi|189333024|dbj|BAG42094.1| conserved hypothetical protein [Burkholderia multivorans ATCC 17616] Length = 210 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 119/208 (57%), Positives = 148/208 (71%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G GG Sbjct: 3 YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAQAVCRFCDTDFVGTDGENGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + D L I W GE R+ V TGGEP+LQ+D PL+ AL+ GF IA+ETNG++ Sbjct: 63 KFKDADALVATIAGLWPAGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFGIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP + Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPSRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 LNTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|78067938|ref|YP_370707.1| organic radical activating-like protein [Burkholderia sp. 383] gi|77968683|gb|ABB10063.1| Organic radical activating enzymes-like protein [Burkholderia sp. 383] Length = 210 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 118/208 (56%), Positives = 149/208 (71%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G GG Sbjct: 3 YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + + L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG++ Sbjct: 63 KFKDAEALVATIAGLWPEGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + IDWICVSPKA L + G ELK+V PQ N +Y DFE + +QPMDGP + Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYYLVQPMDGPSRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 LNTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|206558876|ref|YP_002229636.1| hypothetical protein BCAL0474 [Burkholderia cenocepacia J2315] gi|198034913|emb|CAR50785.1| conserved hypothetical protein [Burkholderia cenocepacia J2315] Length = 210 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 119/208 (57%), Positives = 148/208 (71%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G GG Sbjct: 3 YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG++ Sbjct: 63 KFKDAAALVATIAGLWPEGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP + Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEYFLVQPMDGPSRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 LNTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|53717820|ref|YP_106806.1| hypothetical protein BPSL0178 [Burkholderia pseudomallei K96243] gi|53724959|ref|YP_101992.1| hypothetical protein BMA0153 [Burkholderia mallei ATCC 23344] gi|67642462|ref|ZP_00441218.1| organic radical activating enzyme [Burkholderia mallei GB8 horse 4] gi|76808972|ref|YP_331771.1| GntS [Burkholderia pseudomallei 1710b] gi|121598296|ref|YP_994090.1| hypothetical protein BMASAVP1_A2794 [Burkholderia mallei SAVP1] gi|124385117|ref|YP_001028247.1| hypothetical protein BMA10229_A2285 [Burkholderia mallei NCTC 10229] gi|126439185|ref|YP_001057215.1| organic radical activating protein [Burkholderia pseudomallei 668] gi|126450309|ref|YP_001081890.1| hypothetical protein BMA10247_2364 [Burkholderia mallei NCTC 10247] gi|134284085|ref|ZP_01770779.1| conserved hypothetical protein [Burkholderia pseudomallei 305] gi|167717531|ref|ZP_02400767.1| hypothetical protein BpseD_00837 [Burkholderia pseudomallei DM98] gi|167736572|ref|ZP_02409346.1| hypothetical protein Bpse14_00837 [Burkholderia pseudomallei 14] gi|167813673|ref|ZP_02445353.1| hypothetical protein Bpse9_00961 [Burkholderia pseudomallei 91] gi|167822191|ref|ZP_02453662.1| hypothetical protein Bpseu9_00842 [Burkholderia pseudomallei 9] gi|167892283|ref|ZP_02479685.1| hypothetical protein Bpse7_00882 [Burkholderia pseudomallei 7894] gi|167900778|ref|ZP_02487983.1| hypothetical protein BpseN_00787 [Burkholderia pseudomallei NCTC 13177] gi|167917042|ref|ZP_02504133.1| hypothetical protein BpseBC_00742 [Burkholderia pseudomallei BCC215] gi|217424912|ref|ZP_03456408.1| conserved hypothetical protein [Burkholderia pseudomallei 576] gi|226194613|ref|ZP_03790208.1| conserved hypothetical protein [Burkholderia pseudomallei Pakistan 9] gi|237810350|ref|YP_002894801.1| radical SAM domain protein [Burkholderia pseudomallei MSHR346] gi|251767984|ref|ZP_02269071.2| conserved hypothetical protein [Burkholderia mallei PRL-20] gi|254176794|ref|ZP_04883451.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399] gi|254182243|ref|ZP_04888840.1| conserved hypothetical protein [Burkholderia pseudomallei 1655] gi|254188167|ref|ZP_04894679.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur 52237] gi|254203672|ref|ZP_04910032.1| conserved hypothetical protein [Burkholderia mallei FMH] gi|254208648|ref|ZP_04914996.1| conserved hypothetical protein [Burkholderia mallei JHU] gi|254258885|ref|ZP_04949939.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a] gi|254360298|ref|ZP_04976568.1| conserved hypothetical protein [Burkholderia mallei 2002721280] gi|52208234|emb|CAH34165.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] gi|52428382|gb|AAU48975.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344] gi|76578425|gb|ABA47900.1| GntS [Burkholderia pseudomallei 1710b] gi|121227106|gb|ABM49624.1| conserved hypothetical protein [Burkholderia mallei SAVP1] gi|124293137|gb|ABN02406.1| conserved hypothetical protein [Burkholderia mallei NCTC 10229] gi|126218678|gb|ABN82184.1| conserved hypothetical protein [Burkholderia pseudomallei 668] gi|126243179|gb|ABO06272.1| conserved hypothetical protein [Burkholderia mallei NCTC 10247] gi|134244537|gb|EBA44641.1| conserved hypothetical protein [Burkholderia pseudomallei 305] gi|147745184|gb|EDK52264.1| conserved hypothetical protein [Burkholderia mallei FMH] gi|147750524|gb|EDK57593.1| conserved hypothetical protein [Burkholderia mallei JHU] gi|148029538|gb|EDK87443.1| conserved hypothetical protein [Burkholderia mallei 2002721280] gi|157935847|gb|EDO91517.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur 52237] gi|160697835|gb|EDP87805.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399] gi|184212781|gb|EDU09824.1| conserved hypothetical protein [Burkholderia pseudomallei 1655] gi|217391932|gb|EEC31958.1| conserved hypothetical protein [Burkholderia pseudomallei 576] gi|225933314|gb|EEH29306.1| conserved hypothetical protein [Burkholderia pseudomallei Pakistan 9] gi|237506322|gb|ACQ98640.1| radical SAM domain protein [Burkholderia pseudomallei MSHR346] gi|238523620|gb|EEP87057.1| organic radical activating enzyme [Burkholderia mallei GB8 horse 4] gi|243061139|gb|EES43325.1| conserved hypothetical protein [Burkholderia mallei PRL-20] gi|254217574|gb|EET06958.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a] Length = 210 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 119/208 (57%), Positives = 147/208 (70%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR A CRFCDTDFVG G GG Sbjct: 3 YTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDGAVCRFCDTDFVGTDGENGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + LA I W GE R+ V TGGEP+LQ+D PL+ AL+ GF IA+ETNG++ Sbjct: 63 KFKDAASLAARIASLWPAGEAY-RFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP E Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPSRE 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 LNTRLAIDWCKRHPRWRLSMQTHKYLNI 209 >gi|134297293|ref|YP_001121028.1| organic radical activating enzyme-like protein [Burkholderia vietnamiensis G4] gi|134140450|gb|ABO56193.1| organic radical activating enzyme-like protein [Burkholderia vietnamiensis G4] Length = 210 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 119/208 (57%), Positives = 147/208 (70%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G GG Sbjct: 3 YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRADAVCRFCDTDFVGTDGENGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG++ Sbjct: 63 KFKDAAALVATIAGLWPHGEAH-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP + Sbjct: 122 PVLDTIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPSRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 INTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|126452181|ref|YP_001064455.1| hypothetical protein BURPS1106A_0172 [Burkholderia pseudomallei 1106a] gi|167843783|ref|ZP_02469291.1| hypothetical protein BpseB_00735 [Burkholderia pseudomallei B7210] gi|167909000|ref|ZP_02496091.1| hypothetical protein Bpse112_00785 [Burkholderia pseudomallei 112] gi|242315880|ref|ZP_04814896.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b] gi|254197017|ref|ZP_04903441.1| conserved hypothetical protein [Burkholderia pseudomallei S13] gi|254295716|ref|ZP_04963173.1| conserved hypothetical protein [Burkholderia pseudomallei 406e] gi|126225823|gb|ABN89363.1| conserved hypothetical protein [Burkholderia pseudomallei 1106a] gi|157806282|gb|EDO83452.1| conserved hypothetical protein [Burkholderia pseudomallei 406e] gi|169653760|gb|EDS86453.1| conserved hypothetical protein [Burkholderia pseudomallei S13] gi|242139119|gb|EES25521.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b] Length = 210 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 119/208 (57%), Positives = 147/208 (70%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR A CRFCDTDFVG G GG Sbjct: 3 YTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDGAVCRFCDTDFVGTDGENGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + LA I W GE R+ V TGGEP+LQ+D PL+ AL+ GF IA+ETNG++ Sbjct: 63 KFEDAASLAARIASLWPAGEAY-RFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP E Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPSRE 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 LNTRLAIDWCKRHPRWRLSMQTHKYLNI 209 >gi|107024049|ref|YP_622376.1| organic radical activating enzymes-like [Burkholderia cenocepacia AU 1054] gi|116691136|ref|YP_836759.1| organic radical activating enzymes-like protein [Burkholderia cenocepacia HI2424] gi|170734467|ref|YP_001766414.1| organic radical activating enzyme-like protein [Burkholderia cenocepacia MC0-3] gi|105894238|gb|ABF77403.1| organic radical activating enzymes-like protein [Burkholderia cenocepacia AU 1054] gi|116649225|gb|ABK09866.1| organic radical activating enzymes-like protein [Burkholderia cenocepacia HI2424] gi|169817709|gb|ACA92292.1| organic radical activating enzyme-like protein [Burkholderia cenocepacia MC0-3] Length = 210 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 119/208 (57%), Positives = 148/208 (71%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G GG Sbjct: 3 YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG++ Sbjct: 63 KFKDAAALVATIAGLWPEGEA-NRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP + Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEYFLVQPMDGPSRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 LNTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|83720295|ref|YP_440696.1| hypothetical protein BTH_I0138 [Burkholderia thailandensis E264] gi|167579367|ref|ZP_02372241.1| hypothetical protein BthaT_14560 [Burkholderia thailandensis TXDOH] gi|167617468|ref|ZP_02386099.1| hypothetical protein BthaB_14260 [Burkholderia thailandensis Bt4] gi|257140656|ref|ZP_05588918.1| hypothetical protein BthaA_15810 [Burkholderia thailandensis E264] gi|83654120|gb|ABC38183.1| conserved hypothetical protein [Burkholderia thailandensis E264] Length = 210 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 119/208 (57%), Positives = 147/208 (70%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR A CRFCDTDFVG G GG Sbjct: 3 YTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRGDAVCRFCDTDFVGTDGENGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + LA I W GE R+ V TGGEP+LQ+D PL+ AL+ GF IA+ETNG++ Sbjct: 63 KFKDAASLAAKIASLWPPGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP E Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPSRE 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 LNTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|167561072|ref|ZP_02353988.1| hypothetical protein BoklE_00844 [Burkholderia oklahomensis EO147] Length = 210 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 118/208 (56%), Positives = 148/208 (71%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G GG Sbjct: 3 YTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRDGAVCRFCDTDFVGTDGENGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + + LA I W GE R+ V TGGEP+LQ+D L+ AL+ GF IA+ETNG++ Sbjct: 63 KFKDAESLAAQIASLWPEGEAH-RFVVCTGGEPMLQLDQALVDALHAAGFTIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + IDW+CVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP + Sbjct: 122 PVLESIDWVCVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPSRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++PKWRLS+QTHK++ I Sbjct: 182 FNTKLAIDWCKRHPKWRLSMQTHKYLNI 209 >gi|186474815|ref|YP_001856285.1| radical SAM domain-containing protein [Burkholderia phymatum STM815] gi|184191274|gb|ACC69239.1| Radical SAM domain protein [Burkholderia phymatum STM815] Length = 210 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 118/208 (56%), Positives = 151/208 (72%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A C+FCDTDFVG G GG Sbjct: 3 YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRADAVCKFCDTDFVGTDGENGG 62 Query: 64 RYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ ++LA I W GE + R+ V TGGEP+LQ+D PL+ AL+ +GFEIA+ETNG++ Sbjct: 63 KFRTPEELAAKIASLWPEGEDQ-RFVVCTGGEPMLQIDQPLVDALHAQGFEIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 IDWICVSPKAG L G ELK+V PQ N +Y +F+ F +QPMDGP + Sbjct: 122 PVLDTIDWICVSPKAGAPLVQTKGNELKVVVPQDNQRLADYAKLEFDYFLVQPMDGPSRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 INTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|167568301|ref|ZP_02361175.1| hypothetical protein BoklC_00570 [Burkholderia oklahomensis C6786] Length = 210 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 118/208 (56%), Positives = 148/208 (71%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G GG Sbjct: 3 YTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRDGAVCRFCDTDFVGADGENGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + + LA I W GE R+ V TGGEP+LQ+D L+ AL+ GF IA+ETNG++ Sbjct: 63 KFKDAESLAAQIASLWPEGEAH-RFVVCTGGEPMLQLDQALVDALHAAGFTIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + IDW+CVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP + Sbjct: 122 PVLESIDWVCVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPSRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++PKWRLS+QTHK++ I Sbjct: 182 FNTKLAIDWCKRHPKWRLSMQTHKYLNI 209 >gi|92114161|ref|YP_574089.1| hypothetical protein Csal_2039 [Chromohalobacter salexigens DSM 3043] gi|91797251|gb|ABE59390.1| conserved hypothetical protein [Chromohalobacter salexigens DSM 3043] Length = 215 Score = 244 bits (623), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 116/214 (54%), Positives = 144/214 (67%), Gaps = 6/214 (2%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +YS+KE F TLQGEG AGR +VFCRF+GCNLWSGRE+DR ++CRFCDTDFVG G G Sbjct: 1 MYSVKEAFYTLQGEGARAGRASVFCRFTGCNLWSGRERDRAQSRCRFCDTDFVGTDGQNG 60 Query: 63 GRY-NVDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GR+ + LA + W + Y V TGGEPLLQ+D LI A+ GFE+AVETN Sbjct: 61 GRFADAHALATHLHRLWPGTDDTAATPYVVFTGGEPLLQLDTALITAMRAHGFEVAVETN 120 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD-G 178 GT+ PP GIDW+CVSPK L+I G ELKLV+PQ + P N+ DF F LQPMD Sbjct: 121 GTLTPPDGIDWLCVSPKGDAPLRITQGDELKLVYPQDDAPPANFTHLDFAHFFLQPMDLA 180 Query: 179 PFLEENTNL--AISYCFQNPKWRLSVQTHKFIGI 210 P + T + ++YC +P+WRL++QTHK GI Sbjct: 181 PRGGQGTTMTDTVAYCLDHPQWRLALQTHKIAGI 214 >gi|299531400|ref|ZP_07044808.1| hypothetical protein CTS44_11451 [Comamonas testosteroni S44] gi|298720563|gb|EFI61512.1| hypothetical protein CTS44_11451 [Comamonas testosteroni S44] Length = 212 Score = 244 bits (623), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 121/210 (57%), Positives = 144/210 (68%), Gaps = 2/210 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIF TLQGEGG AG AVFCRF+GCNLW+GREQDR A C+FCDTDFVG GT GG Sbjct: 3 YSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWTGREQDRPKAICQFCDTDFVGTDGTLGG 62 Query: 64 RYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ D+LA+ I QW + R VLTGGEPLLQVD LI AL+ RGF I+VE+NGT+ Sbjct: 63 KFTTADELAERILGQWPADDSRHRMVVLTGGEPLLQVDQALIAALHARGFRISVESNGTV 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY-IGFDFERFSLQPMDGPFL 181 P+GIDW+C+SPKAG D + GQELKLV+PQ +F+ + LQPMD Sbjct: 123 TAPEGIDWLCISPKAGADWIQRSGQELKLVWPQPTFDLAAIEASTEFQHYFLQPMDNAQQ 182 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 N I+ C Q P WRLS+QTHK GIR Sbjct: 183 SSNIAACIAQCMQRPGWRLSLQTHKLTGIR 212 >gi|221065388|ref|ZP_03541493.1| conserved hypothetical protein [Comamonas testosteroni KF-1] gi|220710411|gb|EED65779.1| conserved hypothetical protein [Comamonas testosteroni KF-1] Length = 212 Score = 244 bits (622), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 122/210 (58%), Positives = 143/210 (68%), Gaps = 2/210 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIF TLQGEGG AG AVFCRF+GCNLW+GREQDR +A C+FCDTDFVG GT GG Sbjct: 3 YSVKEIFYTLQGEGGQAGTPAVFCRFAGCNLWTGREQDRPNAICQFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ D LA+ I QW + R VLTGGEPLLQVD LI AL+ RGF I+VE+NGT+ Sbjct: 63 KFATADALAERILSQWPADDSLHRMVVLTGGEPLLQVDEALIAALHARGFRISVESNGTV 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY-IGFDFERFSLQPMDGPFL 181 P+GIDW+C+SPKAG D + GQELKLV+PQ DF+ + LQPMD Sbjct: 123 AAPEGIDWLCISPKAGADWIQRSGQELKLVWPQPTFDLAAIEASTDFQHYFLQPMDNAQQ 182 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 N I C Q P WRLS+QTHK GIR Sbjct: 183 SGNITACIEQCMQRPGWRLSLQTHKLTGIR 212 >gi|152968324|ref|YP_001364108.1| hypothetical protein Krad_4381 [Kineococcus radiotolerans SRS30216] gi|151362841|gb|ABS05844.1| conserved hypothetical protein [Kineococcus radiotolerans SRS30216] Length = 237 Score = 244 bits (622), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 121/234 (51%), Positives = 146/234 (62%), Gaps = 27/234 (11%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y +KEIF TLQGEG HAGR AVFCRFS CNLW+GRE+DR A C FCDTDFVG G GG Sbjct: 3 YLLKEIFYTLQGEGTHAGRPAVFCRFSRCNLWTGREKDRARAICTFCDTDFVGTDGVGGG 62 Query: 64 RYNVDQLA---------------DLIEEQWITGEKEG------------RYCVLTGGEPL 96 R+ D + IT E + ++ V TGGEPL Sbjct: 63 RFATADDLAAAVDASWPAAGLTDDFTDGSAITAESDSSAHSHAPHGAQRKFVVCTGGEPL 122 Query: 97 LQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156 LQ+D +QAL++RGFE+AVETNGT PP GIDW+CVSPK G DL + G ELKLV+PQ Sbjct: 123 LQLDDAAVQALHQRGFEVAVETNGTRTPPPGIDWLCVSPKIGADLVVSRGDELKLVYPQA 182 Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P + DF F LQPMDGP ++ +T AI YC +P+W LS+QTHK++GI Sbjct: 183 GGDPAQFAELDFTSFRLQPMDGPDVQAHTRAAIDYCLTHPQWSLSMQTHKYLGI 236 >gi|188580423|ref|YP_001923868.1| radical SAM domain protein [Methylobacterium populi BJ001] gi|179343921|gb|ACB79333.1| Radical SAM domain protein [Methylobacterium populi BJ001] Length = 210 Score = 243 bits (621), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 121/207 (58%), Positives = 142/207 (68%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE+F TLQGEG AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDF+G+ G GG Sbjct: 3 YAVKELFHTLQGEGAQAGRAAVFCRFAGCNLWSGREEDRAEAACRFCDTDFIGMDGEGGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R++ + G K RY V TGGEPLLQ+D LI A++ RGFE+AVETNGT+ Sbjct: 63 RFSDAEALAEAIAATWGGGKANRYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGTLP 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 P GIDWICVSPKAG L G ELKLVFPQ PE + F LQPMDGP Sbjct: 123 APPGIDWICVSPKAGNPLAQTSGDELKLVFPQAEALPERFADLPFRHHFLQPMDGPEAAA 182 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A++YC + +WRLS+QTHK IGI Sbjct: 183 NTAAAVAYCRSDARWRLSLQTHKIIGI 209 >gi|264679996|ref|YP_003279905.1| hypothetical protein CtCNB1_3863 [Comamonas testosteroni CNB-2] gi|262210511|gb|ACY34609.1| conserved hypothetical protein [Comamonas testosteroni CNB-2] Length = 212 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 121/210 (57%), Positives = 144/210 (68%), Gaps = 2/210 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIF TLQGEGG AG AVFCRF+GCNLW+GREQDR A C+FCDTDFVG GT GG Sbjct: 3 YSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWTGREQDRPKAICQFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ D+LA+ I QW + R VLTGGEPLLQVD LI AL+ RGF I+VE+NGT+ Sbjct: 63 KFATADELAERILGQWPADDSRHRMVVLTGGEPLLQVDQALIAALHVRGFRISVESNGTV 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY-IGFDFERFSLQPMDGPFL 181 P+GIDW+C+SPKAG D + GQELKLV+PQ +F+ + LQPMD Sbjct: 123 AAPEGIDWLCISPKAGADWIQRSGQELKLVWPQPTFDLAAIEASTEFQHYFLQPMDNAQQ 182 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 N I+ C Q P WRLS+QTHK GIR Sbjct: 183 SSNIAACIAQCMQRPGWRLSLQTHKLTGIR 212 >gi|89901390|ref|YP_523861.1| organic radical activating-like protein [Rhodoferax ferrireducens T118] gi|89346127|gb|ABD70330.1| Organic radical activating enzymes-like [Rhodoferax ferrireducens T118] Length = 211 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 110/208 (52%), Positives = 145/208 (69%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIF TLQGEG HAGR AVFCRF+GCNLWSG E R SA C+FCDTDFVG G GG Sbjct: 3 YSVKEIFYTLQGEGHHAGRPAVFCRFAGCNLWSGAEDSRASAVCQFCDTDFVGTDGEGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + + LA I + W +Y V TGGEPLLQ++ LI A++ GFE+A+ETNGT+ Sbjct: 63 KFRDAETLAAAINQLWPASYPASKYVVFTGGEPLLQLNAALIDAMHDAGFEVAIETNGTL 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+G+DW+CVSPK G L ++ G E+K+V PQ ++Y F+ + +Q MDGP + Sbjct: 123 PVPEGVDWVCVSPKMGSALVVRAGNEIKVVIPQAGQVLDDYACLAFDHYFVQAMDGPLQK 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 EN +AI YC +P+W+LS+QTHK + I Sbjct: 183 ENLRMAIDYCKAHPQWKLSLQTHKLLQI 210 >gi|41019307|gb|AAR98565.1| GntS [Micromonospora echinospora] Length = 212 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 117/211 (55%), Positives = 140/211 (66%), Gaps = 3/211 (1%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y IKEIF TLQGEG HAGR AVFCRF+ CNLW+GRE++R A CRFCDTDFVG G G Sbjct: 1 MYRIKEIFYTLQGEGTHAGRPAVFCRFTSCNLWTGREEERYRAICRFCDTDFVGTDGPGG 60 Query: 63 GRYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GR+ G+ R Y V TGGEPLLQ+D + AL+ GFE+AVETN Sbjct: 61 GRFGTAAELAAAVAAAWQGQAHPRSRPYVVCTGGEPLLQLDEAAVSALHDAGFEVAVETN 120 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GT P GIDW CVSPKAG ++ + G +LKLV+PQ P + DF F LQPMDGP Sbjct: 121 GTRPAPPGIDWTCVSPKAGAEVVLTRGDDLKLVYPQPGAEPARFEHLDFTHFMLQPMDGP 180 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A+ YC ++P+WRLS+QTHK+IGI Sbjct: 181 DRVANTEAAVRYCLEHPQWRLSLQTHKYIGI 211 >gi|87308581|ref|ZP_01090721.1| hypothetical protein DSM3645_14515 [Blastopirellula marina DSM 3645] gi|87288673|gb|EAQ80567.1| hypothetical protein DSM3645_14515 [Blastopirellula marina DSM 3645] Length = 211 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 118/208 (56%), Positives = 144/208 (69%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y +KEI+ TLQGEG +GR AVFCRF+GCNLWSGREQDR SA C+FCDT FVG G GG Sbjct: 3 YFVKEIYYTLQGEGAKSGRPAVFCRFTGCNLWSGREQDRASAICQFCDTQFVGTDGPGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + +LA + +W + V TGGEPLLQ+D +I+AL+ GFE+AVETNGT Sbjct: 63 VFRSALELAGAVAAKWPESWNANKMVVCTGGEPLLQLDEAVIEALHDEGFEVAVETNGTK 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 PP GIDWI VSPKA + ++ G ELKLVFPQ P Y DF+ F LQPMDG E Sbjct: 123 IPPPGIDWISVSPKANAECILRAGDELKLVFPQPGGEPTKYENLDFDHFFLQPMDGLSRE 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +NT LA YC ++P+W LS+QTHK IG+ Sbjct: 183 QNTQLAAQYCLKHPQWELSIQTHKLIGL 210 >gi|85814032|emb|CAF31448.1| putative gentamicin production protein [Micromonospora echinospora] Length = 215 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 117/211 (55%), Positives = 140/211 (66%), Gaps = 3/211 (1%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y IKEIF TLQGEG HAGR AVFCRF+ CNLW+GRE++R A CRFCDTDFVG G G Sbjct: 4 VYRIKEIFYTLQGEGTHAGRPAVFCRFTSCNLWTGREEERYRAICRFCDTDFVGTDGPGG 63 Query: 63 GRYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GR+ G+ R Y V TGGEPLLQ+D + AL+ GFE+AVETN Sbjct: 64 GRFGTAAELAAAVAAAWQGQAHPRSRPYVVCTGGEPLLQLDEAAVSALHDAGFEVAVETN 123 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GT P GIDW CVSPKAG ++ + G +LKLV+PQ P + DF F LQPMDGP Sbjct: 124 GTRPAPPGIDWTCVSPKAGAEVVLTRGDDLKLVYPQPGAEPARFEHLDFTHFMLQPMDGP 183 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A+ YC ++P+WRLS+QTHK+IGI Sbjct: 184 DRVANTEAAVRYCLEHPQWRLSLQTHKYIGI 214 >gi|224038930|gb|ACN38359.1| putative sisomicin production protein [Micromonospora inyonensis] Length = 215 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 117/211 (55%), Positives = 141/211 (66%), Gaps = 3/211 (1%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y IKEIF TLQGEG HAGR AVFCRF+ CNLW+GRE+DR A C+FCDTDFVG G G Sbjct: 4 VYRIKEIFYTLQGEGTHAGRPAVFCRFTSCNLWTGREEDRHRAICQFCDTDFVGTDGPGG 63 Query: 63 GRYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GR+ G+ R Y V TGGEPLLQ+D + AL++ GFE+AVETN Sbjct: 64 GRFATAAELAAAVATAWRGQAHPRSRPYVVCTGGEPLLQLDEAAVAALHEAGFEVAVETN 123 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GT P G+DW+CVSPKAG DL + G +LKLV+PQ P + DF F LQPMDGP Sbjct: 124 GTRPAPPGLDWVCVSPKAGADLVLTRGDDLKLVYPQPGAEPGRFEHLDFTHFMLQPMDGP 183 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A+ YC ++P+WR S+QTHK+IGI Sbjct: 184 DRVANTEAAVRYCLEHPQWRFSLQTHKYIGI 214 >gi|89093158|ref|ZP_01166108.1| hypothetical protein MED92_03737 [Oceanospirillum sp. MED92] gi|89082454|gb|EAR61676.1| hypothetical protein MED92_03737 [Oceanospirillum sp. MED92] Length = 210 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 113/209 (54%), Positives = 141/209 (67%), Gaps = 1/209 (0%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +YS+KEIF +LQGEG +GR ++FCRF+GCNLWSGREQDR A C FCDTDF+G G G Sbjct: 1 MYSVKEIFFSLQGEGAQSGRASIFCRFAGCNLWSGREQDREKAVCDFCDTDFIGTDGQNG 60 Query: 63 GRYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 G++ Q L + ++E W Y + TGGEP LQ+D LI ++ GFE+AVETNGT Sbjct: 61 GKFETAQALCNFLQEFWPNNSSIPPYIIFTGGEPALQLDQDLIDCCHEYGFEVAVETNGT 120 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 P GIDW+CVSPKA +L I G ELKLV+PQ PE + +F F LQPMDGP Sbjct: 121 KPLPSGIDWVCVSPKADAELVITKGDELKLVYPQALAMPEKFASLNFRHFYLQPMDGPAR 180 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + T I YC Q+PKW+LS+Q HK +GI Sbjct: 181 QLYTKEVIDYCLQHPKWKLSLQNHKVLGI 209 >gi|300023287|ref|YP_003755898.1| radical SAM protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525108|gb|ADJ23577.1| Radical SAM domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 208 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 121/209 (57%), Positives = 143/209 (68%), Gaps = 3/209 (1%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR A C+FCDTDFVG G G Sbjct: 1 MYAVKEIFYTLQGEGTNAGRPAVFCRFAGCNLWTGREVDRAKAVCQFCDTDFVGTDGEGG 60 Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 GR+ D LA G VLTGGEP+LQVD L+ AL+ RGF IA+ETNGT Sbjct: 61 GRFRTADDLARACRA--ACGSDGDMLVVLTGGEPMLQVDQELVDALHARGFTIAIETNGT 118 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + + IDWICVSPKAG L+ K G ELKLV+PQ V P +Y F+ LQPMDG Sbjct: 119 LPVLETIDWICVSPKAGSQLQQKHGHELKLVYPQEGVDPADYADLAFQTRFLQPMDGATR 178 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E NT A++YC NP WRLS+QTHK +GI Sbjct: 179 EANTQAAVAYCKANPGWRLSLQTHKLLGI 207 >gi|46203559|ref|ZP_00209018.1| COG0602: Organic radical activating enzymes [Magnetospirillum magnetotacticum MS-1] Length = 229 Score = 241 bits (616), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 120/207 (57%), Positives = 141/207 (68%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE+F TLQGEG AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG+ G GG Sbjct: 22 YAVKELFHTLQGEGAQAGRAAVFCRFAGCNLWSGREEDRAGAACRFCDTDFVGLDGEGGG 81 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R+ + G RY V TGGEPLLQ+D LI A++ RGFE+AVETNGT+ Sbjct: 82 RFASAEALAGAIAATWAGGAAHRYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGTLA 141 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 P GIDWICVSPKAG L G ELKLV+PQ +PE + F LQPMDGP Sbjct: 142 APPGIDWICVSPKAGNALIQTSGDELKLVYPQAEAAPELFADLPFRHRFLQPMDGPEAAA 201 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A++YC + +WRLS+QTHK IGI Sbjct: 202 NTAAAVAYCRADARWRLSLQTHKIIGI 228 >gi|315499628|ref|YP_004088431.1| radical sam domain protein [Asticcacaulis excentricus CB 48] gi|315417640|gb|ADU14280.1| Radical SAM domain protein [Asticcacaulis excentricus CB 48] Length = 216 Score = 241 bits (616), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 118/215 (54%), Positives = 145/215 (67%), Gaps = 6/215 (2%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +YS KEIFLTLQGEGG AGRVAVF RF+GCNLWSGREQDR +A C FCDTDFVG G G Sbjct: 2 VYSFKEIFLTLQGEGGQAGRVAVFARFAGCNLWSGREQDRATAACTFCDTDFVGTDGEGG 61 Query: 63 GRYNVDQLA-DLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 G+++ + A ++ W + + V TGGEPLLQ+D PLI A+ G+ IAVE+NGT Sbjct: 62 GKFDTPEAAVAALDAHWGQIDPAHKSVVFTGGEPLLQLDAPLIAAVKSAGYFIAVESNGT 121 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD---- 177 + P GIDW+C+SPK L GQELKLV+PQ V P + DFERF LQP D Sbjct: 122 LRAPIGIDWLCISPKGENRLHQTSGQELKLVWPQDRVDPAEFARMDFERFYLQPKDPLDQ 181 Query: 178 GPFLE-ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 P + +T I YC +P+WR+SVQTHK +G+R Sbjct: 182 NPAMRAAHTQAVIDYCLAHPQWRMSVQTHKVVGVR 216 >gi|329902674|ref|ZP_08273228.1| Queuosine Biosynthesis QueE Radical SAM [Oxalobacteraceae bacterium IMCC9480] gi|327548646|gb|EGF33296.1| Queuosine Biosynthesis QueE Radical SAM [Oxalobacteraceae bacterium IMCC9480] Length = 207 Score = 241 bits (616), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 114/206 (55%), Positives = 142/206 (68%), Gaps = 1/206 (0%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 +KEIF TLQGEG HAGR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG G GG++ Sbjct: 1 MKEIFYTLQGEGTHAGRPAVFCRFAGCNLWSGRESDRATAVCQFCDTDFVGTDGVMGGKF 60 Query: 66 -NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + + LA + W ++ V+TGGEP+LQ+D+ LI AL+ +GF IA+ETNGT+ Sbjct: 61 ADAESLAATVNSLWPADYPASKFIVITGGEPMLQLDLALIDALHAQGFMIAIETNGTLPV 120 Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184 P +DWICVSPK G L + G ELK+V PQ+ Y DFE F LQPMD P N Sbjct: 121 PPEVDWICVSPKMGSKLVQRSGNELKVVIPQLGQDLLMYEALDFEHFYLQPMDSPTAARN 180 Query: 185 TNLAISYCFQNPKWRLSVQTHKFIGI 210 T AI +C ++PKW+LSVQTHK + I Sbjct: 181 TERAIDHCKRHPKWKLSVQTHKILQI 206 >gi|326795520|ref|YP_004313340.1| radical SAM protein [Marinomonas mediterranea MMB-1] gi|326546284|gb|ADZ91504.1| Radical SAM domain protein [Marinomonas mediterranea MMB-1] Length = 216 Score = 240 bits (613), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 113/216 (52%), Positives = 147/216 (68%), Gaps = 9/216 (4%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y++KE F +LQGEG HAGR A+FCRF+GCNLWSG+E+ RLSA C+FCDTDF G+ G G Sbjct: 1 MYNVKESFYSLQGEGAHAGRPAIFCRFTGCNLWSGKEKHRLSADCQFCDTDFNGVNGQNG 60 Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 GR+ + D+LA I QW G +Y V TGGEP LQ+D LI A+ GF +A+ETNGT Sbjct: 61 GRFKSADELAKHIANQWPQGHGN-KYVVFTGGEPALQLDQALISAVKSYGFMVAIETNGT 119 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + P IDWICVSPK L + G ELK V+PQ N++P++Y G +FE F LQPMD + Sbjct: 120 LRLPDNIDWICVSPKTTDPLVVNAGNELKFVYPQTNLNPKDYEGLEFEHFYLQPMDLSAV 179 Query: 182 EENTNLA-------ISYCFQNPKWRLSVQTHKFIGI 210 + +A + YC +NP WR+S+QTHK + I Sbjct: 180 PKQNIIASDTQSATLKYCLENPLWRISLQTHKMLNI 215 >gi|167585085|ref|ZP_02377473.1| organic radical activating enzyme-like protein [Burkholderia ubonensis Bu] Length = 210 Score = 240 bits (613), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 118/208 (56%), Positives = 149/208 (71%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G GG Sbjct: 3 YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAQALCRFCDTDFVGTDGENGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + LA + W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG++ Sbjct: 63 KFKDAAALAAQVASLWPDGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + IDWICVSPKA L + G ELK+V PQ N +Y DF+ F +QPMDGP + Sbjct: 122 PVLESIDWICVSPKADVPLVVTKGNELKVVIPQDNQRLADYAKLDFDYFLVQPMDGPSRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 182 LNTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|163856911|ref|YP_001631210.1| hypothetical protein Bpet2600 [Bordetella petrii DSM 12804] gi|163260639|emb|CAP42941.1| conserved hypothetical protein [Bordetella petrii] Length = 391 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 126/208 (60%), Positives = 148/208 (71%), Gaps = 2/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS KEIF TLQGEG AGR AVFCRF+GCNLWSGRE DR A C FCDTDFVG G GG Sbjct: 184 YSTKEIFKTLQGEGAQAGRAAVFCRFAGCNLWSGREADRAGAVCTFCDTDFVGTDGPGGG 243 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + QLAD I W G ++ RY V TGGEPLLQ+D L+QA++ GF +A+ETNGT+ Sbjct: 244 KFASAAQLADAIAAAWGPGTQD-RYVVFTGGEPLLQLDAALLQAVHGHGFTVAIETNGTL 302 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDWICVSPK + I+ G ELKLV+PQ PE Y DF+ F LQPMDGP Sbjct: 303 PAPAGIDWICVSPKGSARVVIERGHELKLVYPQAEARPEAYAHLDFQHFFLQPMDGPARA 362 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A+ YC Q+P+WRLS+QTHK+IGI Sbjct: 363 ANTQQAVQYCMQHPQWRLSLQTHKYIGI 390 >gi|83649266|ref|YP_437701.1| organic radical activating protein [Hahella chejuensis KCTC 2396] gi|83637309|gb|ABC33276.1| Organic radical activating enzyme [Hahella chejuensis KCTC 2396] Length = 217 Score = 238 bits (608), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 117/217 (53%), Positives = 145/217 (66%), Gaps = 10/217 (4%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y +KE F TLQGEG H GR AVFCRFS CNLW+GRE+DR A C FCDTDF+G+ G G Sbjct: 1 MYRVKEAFYTLQGEGAHQGRPAVFCRFSKCNLWTGREKDRAGAVCNFCDTDFIGVDGQNG 60 Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 G++ ++LAD I W E++ R+ V TGGEPLLQ+D PLI+A + RGFE+AVETNGT Sbjct: 61 GKFATAEELADHILAFW-PPEQDNRFVVCTGGEPLLQLDEPLIEAFHARGFEVAVETNGT 119 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + P GIDW+CVSPK ++ I ELKLV+PQ PE + R L PM P + Sbjct: 120 LPAPAGIDWLCVSPKGRAEVVITECDELKLVYPQPEAPPERFSDIRAGRHYLSPMANPLV 179 Query: 182 EE--------NTNLAISYCFQNPKWRLSVQTHKFIGI 210 E NT LA+ YC ++PKWRLSVQ HK +GI Sbjct: 180 REGNDEQKRRNTQLAMEYCMRHPKWRLSVQLHKILGI 216 >gi|326330124|ref|ZP_08196435.1| GntS [Nocardioidaceae bacterium Broad-1] gi|325951937|gb|EGD43966.1| GntS [Nocardioidaceae bacterium Broad-1] Length = 211 Score = 238 bits (607), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 115/208 (55%), Positives = 139/208 (66%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y +KEIF TLQGEG HAGR AVFCRF+ CNLW+GRE+DR A C+FCDT FVG G GG Sbjct: 3 YKVKEIFYTLQGEGTHAGRPAVFCRFTSCNLWTGREKDRDRAICKFCDTAFVGTDGEGGG 62 Query: 64 RYNVDQLADLIE-EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ +W G V TGGEPLLQ+D + A+ GF +AVETNGTI Sbjct: 63 KFADAAALAAAVASKWPMGTDGQPMVVCTGGEPLLQLDDAAVAAMKAAGFYVAVETNGTI 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 PP GIDW+CVSPK G DL ++ GQELK V PQ +V P + DFE F +QPMDGP L Sbjct: 123 LPPAGIDWLCVSPKIGSDLVVESGQELKFVVPQADVDPTTFEALDFESFRVQPMDGPDLA 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A+ +C ++P+W LS QTHKF+GI Sbjct: 183 ANTEYAVKFCLEHPRWHLSTQTHKFLGI 210 >gi|226228044|ref|YP_002762150.1| hypothetical protein GAU_2638 [Gemmatimonas aurantiaca T-27] gi|226091235|dbj|BAH39680.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 212 Score = 237 bits (605), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 118/211 (55%), Positives = 142/211 (67%), Gaps = 4/211 (1%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE F TLQGEG +AGR AVFCRFSGCNLW+GRE DR A C FCDTDFVG+ G GG Sbjct: 3 YTVKECFYTLQGEGVNAGRAAVFCRFSGCNLWTGREADRHKATCTFCDTDFVGV-GPDGG 61 Query: 64 RYNVDQLAD-LIEEQW-ITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 ++ ++ +W + R + V TGGEPLLQ+D I AL+ GFEIAVETNG Sbjct: 62 KFATAAALAAFVKSRWPVDAPGSARPFVVCTGGEPLLQLDEAAIDALHAEGFEIAVETNG 121 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T P G+DWICVSPKA + + G ELKLVFPQ PE + +F F LQPMD P Sbjct: 122 TQPAPAGLDWICVSPKADAPVVLTRGDELKLVFPQEQARPERFASLEFAHFLLQPMDDPQ 181 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 ENT A++YC +P+WRLSVQTHK +GIR Sbjct: 182 AAENTRAALAYCLAHPQWRLSVQTHKVLGIR 212 >gi|332188914|ref|ZP_08390617.1| hypothetical protein SUS17_4029 [Sphingomonas sp. S17] gi|332011054|gb|EGI53156.1| hypothetical protein SUS17_4029 [Sphingomonas sp. S17] Length = 210 Score = 237 bits (605), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 114/209 (54%), Positives = 146/209 (69%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE+FLTLQGEG AGR AVF RF+GCNLWSGREQDR SA CRFCDTDFVG+ G GG Sbjct: 3 YAVKEMFLTLQGEGVQAGRRAVFVRFAGCNLWSGREQDRASAICRFCDTDFVGVDGLGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ + L +E W E+ R+ VLTGGEP+LQVD L+ AL+ GF IA+E+NGTI Sbjct: 63 RFADAGALVAAVEGFW-GPERAERFVVLTGGEPMLQVDDALVDALHDAGFFIAIESNGTI 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 +DW+C+SPKAG ++ + GQELKLV+PQ + P G+DF LQP+D P E Sbjct: 122 AAHPRLDWVCISPKAGSEVVQRSGQELKLVWPQAGIDPAEVEGWDFANHLLQPLDDPRAE 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 N I+ + P+WRL++QTHK +G+R Sbjct: 182 ANREACIAMVMERPRWRLTLQTHKMLGLR 210 >gi|307545033|ref|YP_003897512.1| hypothetical protein HELO_2443 [Halomonas elongata DSM 2581] gi|307217057|emb|CBV42327.1| hypothetical protein HELO_2443 [Halomonas elongata DSM 2581] Length = 214 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 117/213 (54%), Positives = 142/213 (66%), Gaps = 5/213 (2%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +YS+KE F +LQGEGG AGR +VFCRF+GCNLWSGRE DR+SA CRFCDTDF G G G Sbjct: 1 MYSVKEAFYSLQGEGGQAGRASVFCRFAGCNLWSGREADRVSAACRFCDTDFRGTDGQNG 60 Query: 63 GRY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GR+ + + LA+ + W R + TGGEPLLQ+D LI A++ R F++AVETNG Sbjct: 61 GRFADAETLAEHLVGLWEGAPDGSRPQVIFTGGEPLLQLDDALIAAMHDREFDVAVETNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD-GP 179 T+ P GIDW+CVSPK L G ELKLV PQ PE + G DF F LQPMD P Sbjct: 121 TLAAPAGIDWLCVSPKGDVPLVQTRGDELKLVHPQPEAPPERFTGLDFRHFFLQPMDTSP 180 Query: 180 FLEENTNLA--ISYCFQNPKWRLSVQTHKFIGI 210 E +A ++YC NP+WRLS+QTHK GI Sbjct: 181 LGETRDTMAATVAYCLANPRWRLSLQTHKIAGI 213 >gi|307293826|ref|ZP_07573670.1| Radical SAM domain protein [Sphingobium chlorophenolicum L-1] gi|306879977|gb|EFN11194.1| Radical SAM domain protein [Sphingobium chlorophenolicum L-1] Length = 215 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 113/214 (52%), Positives = 148/214 (69%), Gaps = 7/214 (3%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE+FLTLQGEG HAGR AVF RF+GCNLWSGREQDR +A C+FCDTDFVG G GG Sbjct: 3 YAVKELFLTLQGEGVHAGRRAVFLRFAGCNLWSGREQDRATAICQFCDTDFVGTDGDGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + D LA+ W G EGRY VLTGGEP+LQ+D L+ AL+ RGF IAVE+NGT+ Sbjct: 63 KFADADSLAEAALALWGEG-AEGRYIVLTGGEPMLQIDDALVDALHARGFAIAVESNGTL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----VSPENYIGFDFERFSLQPMD 177 G+DW+C+SPKAG ++ + G ELKLV+PQ E+ G+ F+ +QP+D Sbjct: 122 PAHPGLDWVCISPKAGSEVVQRSGNELKLVWPQPGQGHGIADVEDMEGWAFDHLLVQPLD 181 Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 P N A+ P+WRLS+Q+HK++G+R Sbjct: 182 DPDAARNAQAAVDLVLARPRWRLSLQSHKYLGLR 215 >gi|83309346|ref|YP_419610.1| organic radical activating protein [Magnetospirillum magneticum AMB-1] gi|82944187|dbj|BAE49051.1| Organic radical activating enzyme [Magnetospirillum magneticum AMB-1] Length = 202 Score = 235 bits (599), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 116/208 (55%), Positives = 148/208 (71%), Gaps = 10/208 (4%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y+++EIF +LQGEG AGR AVF RF+GCNLWSGRE DR +A CRFCDTDFVG G Sbjct: 3 YTVREIFHSLQGEGVQAGRPAVFLRFAGCNLWSGREADRETATCRFCDTDFVG-----GE 57 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +Y + LA+ ++ + G RY V+TGGEP LQ+D L++AL+ GFE+A+ETNGT+ Sbjct: 58 KYPDAQGLAEAVKA--VGGAT--RYVVVTGGEPGLQLDGALVEALHGLGFEVAIETNGTV 113 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 E P G+DW+CVSPKAG LK+ G ELKLVFPQ P ++ DF F LQPMDGP + Sbjct: 114 ELPSGLDWVCVSPKAGTTLKVTRGDELKLVFPQAGAMPGDFEHLDFAYFLLQPMDGPERD 173 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +T AI +C +P+WRLS+QTHK +GI Sbjct: 174 AHTRAAIGHCLTHPRWRLSLQTHKIVGI 201 >gi|260752296|ref|YP_003225189.1| hypothetical protein Za10_0051 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551659|gb|ACV74605.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 217 Score = 234 bits (598), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 114/216 (52%), Positives = 145/216 (67%), Gaps = 7/216 (3%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + Y++KE FLTLQGEG AGR AVF RF+GCNLW+GRE DR A CRFCDTDFVGI G Sbjct: 3 RHYAVKESFLTLQGEGIQAGRRAVFIRFAGCNLWNGREDDREQATCRFCDTDFVGIDGEN 62 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRY------CVLTGGEPLLQVDVPLIQALNKRGFEIA 115 GGR+ ++LA+ W E RY VLTGGEPLLQVD L+ AL + FEIA Sbjct: 63 GGRFTAEELAEQAIRLWKEA-IESRYQSVRPFVVLTGGEPLLQVDEALLLALKNQAFEIA 121 Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175 +ETNGT P IDW+C+SPKAG + ++ G E+KLV+PQ + E DF+ + +QP Sbjct: 122 IETNGTQPAPSAIDWVCMSPKAGSQIILEKGNEIKLVWPQKGIDIEALEKLDFDHYLIQP 181 Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 MD + +EN AI++ Q P WRLS+Q+HK IG++ Sbjct: 182 MDDEYQKENIQKAIAFVMQRPLWRLSIQSHKLIGVK 217 >gi|226940051|ref|YP_002795124.1| Organic radical activating enzyme [Laribacter hongkongensis HLHK9] gi|226714977|gb|ACO74115.1| Organic radical activating enzyme [Laribacter hongkongensis HLHK9] Length = 209 Score = 234 bits (596), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 119/209 (56%), Positives = 141/209 (67%), Gaps = 3/209 (1%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG H+GR AVFCRF+GCNLWSGRE DR A C+FCDTDFVG G GG Sbjct: 3 YTVKEIFHTLQGEGVHSGRAAVFCRFTGCNLWSGRETDRAQATCQFCDTDFVGT-GPDGG 61 Query: 64 RYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ +LA I + W G Y V TGGEPLLQ+D LI+A++ RGFE+ VETNGTI Sbjct: 62 KFACARELAGRIADSW-AGTGGTPYVVFTGGEPLLQLDEELIEAMHARGFEVGVETNGTI 120 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDW+CVSPKAG K G ELKLV+PQ + PE F R+ LQPMDGP Sbjct: 121 PAPPGIDWLCVSPKAGSGWVQKQGDELKLVYPQPGLLPETVELTGFSRYWLQPMDGPEQT 180 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + AI +C +P W LS+Q HK GIR Sbjct: 181 MHIKAAIGFCLLHPDWHLSLQNHKLAGIR 209 >gi|56552191|ref|YP_163030.1| organic radical activating-like protein [Zymomonas mobilis subsp. mobilis ZM4] gi|56543765|gb|AAV89919.1| organic radical activating-like protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 217 Score = 234 bits (596), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 114/214 (53%), Positives = 144/214 (67%), Gaps = 7/214 (3%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE FLTLQGEG AGR AVF RF+GCNLW+GRE DR A CRFCDTDFVGI G GG Sbjct: 5 YAVKESFLTLQGEGIQAGRRAVFIRFAGCNLWNGREDDREQATCRFCDTDFVGIDGENGG 64 Query: 64 RYNVDQLADLIEEQWITGEKEGRY------CVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 R+ ++LA+ W E RY VLTGGEPLLQVD L+ AL + FEIA+E Sbjct: 65 RFTAEELAEQAIRLWKEA-IESRYQSVRPFVVLTGGEPLLQVDEALLLALKNQAFEIAIE 123 Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177 TNGT P IDW+C+SPKAG + ++ G E+KLV+PQ + E DF+ + +QPMD Sbjct: 124 TNGTQPVPSAIDWVCMSPKAGSQIILEKGNEIKLVWPQKGIDIEALEKLDFDHYLIQPMD 183 Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + +EN AI++ Q P WRLS+Q+HK IG++ Sbjct: 184 DEYQKENIQKAIAFVMQRPLWRLSIQSHKLIGVK 217 >gi|241761735|ref|ZP_04759822.1| organic radical activating enzymes-like protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374043|gb|EER63576.1| organic radical activating enzymes-like protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 217 Score = 234 bits (596), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 114/214 (53%), Positives = 144/214 (67%), Gaps = 7/214 (3%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE FLTLQGEG AGR AVF RF+GCNLW+GRE DR A CRFCDTDFVGI G GG Sbjct: 5 YAVKESFLTLQGEGIQAGRRAVFIRFAGCNLWNGREDDREQATCRFCDTDFVGIDGENGG 64 Query: 64 RYNVDQLADLIEEQWITGEKEGRY------CVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 R+ ++LA+ W E RY VLTGGEPLLQVD L+ AL + FEIA+E Sbjct: 65 RFTAEELAEQAIRLWKEA-LESRYQYVRPFVVLTGGEPLLQVDEALLLALKNQAFEIAIE 123 Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177 TNGT P IDW+C+SPKAG + ++ G E+KLV+PQ + E DF+ + +QPMD Sbjct: 124 TNGTQPVPSAIDWVCMSPKAGSQIILEKGNEIKLVWPQKGIDIEALEKLDFDHYLIQPMD 183 Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + +EN AI++ Q P WRLS+Q+HK IG++ Sbjct: 184 DEYQKENIQKAIAFVMQRPLWRLSIQSHKLIGVK 217 >gi|311696706|gb|ADP99579.1| organic radical activating enzyme [marine bacterium HP15] Length = 218 Score = 233 bits (594), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 115/219 (52%), Positives = 144/219 (65%), Gaps = 13/219 (5%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y +KE F TLQGEG AGR AVFCRFS CNLW+GRE+DR +A C FCDTDFVG G G Sbjct: 1 MYRVKEAFYTLQGEGAQAGRAAVFCRFSKCNLWTGREKDRATAVCNFCDTDFVGTDGQNG 60 Query: 63 GRYNV-DQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GR+ ++LA I W E G+ Y V TGGEPLLQ+D PLI+AL++ GFE+ VETNG Sbjct: 61 GRFETPEELARHIRNLW--PEAPGKPYVVCTGGEPLLQLDAPLIEALHREGFEVGVETNG 118 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T+ P+GIDW+CVSPKA + ++ ELKLV+PQ PE ++G + L PM P Sbjct: 119 TLPAPEGIDWLCVSPKADAPVVLEACDELKLVYPQPLAMPERFLGIRASHYFLSPMASPS 178 Query: 181 LEE---------NTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E NT A YC +P+WRL++Q HK IGI Sbjct: 179 IPETAVDEIKQSNTRRATDYCLAHPQWRLTLQMHKIIGI 217 >gi|114798300|ref|YP_759262.1| hypothetical protein HNE_0532 [Hyphomonas neptunium ATCC 15444] gi|114738474|gb|ABI76599.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444] Length = 215 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 122/213 (57%), Positives = 141/213 (66%), Gaps = 7/213 (3%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KE F TLQGEG H GR AVF RF+GCNLWSG E+DR A CRFCDTDFVG G GG Sbjct: 3 YSVKEAFYTLQGEGAHTGRAAVFLRFAGCNLWSGLERDREKAVCRFCDTDFVGTNGEGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 ++ LA IE W G Y V TGGEPL+Q+D PLI AL++ GFEIA+ETNG Sbjct: 63 KFREPGLLAAHIESIWQANASPGGRPYVVCTGGEPLMQLDEPLIGALHEAGFEIAIETNG 122 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV--NVSPENYIGFDFERFSLQPM-D 177 T+ P IDWICVSPKA L K G ELKLV+PQ PE + DFE F LQP D Sbjct: 123 TLPAPASIDWICVSPKANAPLAQKSGNELKLVYPQTEPEAQPECFETLDFEHFFLQPRDD 182 Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 GP + +A +YC +NPKWRLS+QTHK G+ Sbjct: 183 GPSVSHVAAVA-NYCLKNPKWRLSLQTHKLTGL 214 >gi|294013047|ref|YP_003546507.1| putative organic radical activating enzyme [Sphingobium japonicum UT26S] gi|292676377|dbj|BAI97895.1| putative organic radical activating enzyme [Sphingobium japonicum UT26S] Length = 215 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 109/213 (51%), Positives = 145/213 (68%), Gaps = 5/213 (2%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE+FLTLQGEG HAGR AVF RF+GCNLW+GREQDR SA CRFCDTDFVG G GG Sbjct: 3 YAVKEMFLTLQGEGVHAGRRAVFLRFAGCNLWTGREQDRASAVCRFCDTDFVGTDGDGGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R+ ++GRY VLTGGEP+LQVD L+ AL+ RGF IA+E+NGT+ Sbjct: 63 RFADADGLADAALALWGEGRDGRYIVLTGGEPMLQVDDALVDALHARGFAIAIESNGTLP 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----VSPENYIGFDFERFSLQPMDG 178 G+DW+C+SPKAG ++ + G ELKLV+PQ E+ G+ F+ + +QP+D Sbjct: 123 AHPGLDWVCISPKAGSEVVQRSGNELKLVWPQPGQGHSLADVEDMEGWAFDHWLVQPLDD 182 Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 P +N A+ + P+WRLS+Q+HK++G+R Sbjct: 183 PKAADNARAAVELVMERPRWRLSLQSHKYLGLR 215 >gi|114319183|ref|YP_740866.1| radical SAM domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114225577|gb|ABI55376.1| Radical SAM domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 209 Score = 231 bits (589), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 119/208 (57%), Positives = 141/208 (67%), Gaps = 3/208 (1%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+ EI TLQGEG GR AVFCRF+GCNLWSGRE R SA CRFCDT FVG G+ GG Sbjct: 3 YSVHEIHYTLQGEGAQTGRPAVFCRFAGCNLWSGREAHRASAICRFCDTAFVGTGGSGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ + ++LA+ + W G + V TGGEPLLQ+D LI AL++RGFE+AVETNGT Sbjct: 63 RFRSANELAERLAGYWPGGGRP--LVVCTGGEPLLQLDSALIDALHRRGFEVAVETNGTR 120 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P G+DWICVSPKAG L + G ELKLV PQ PE + F F LQPMDGP E Sbjct: 121 PAPAGLDWICVSPKAGAPLVLTTGDELKLVHPQPGAEPERFQHLAFRHFFLQPMDGPERE 180 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT + YC +P+W LS+QTHK +GI Sbjct: 181 ANTQACVDYCLAHPQWSLSLQTHKLLGI 208 >gi|241766442|ref|ZP_04764315.1| conserved hypothetical protein [Acidovorax delafieldii 2AN] gi|241363364|gb|EER58879.1| conserved hypothetical protein [Acidovorax delafieldii 2AN] Length = 211 Score = 231 bits (589), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 124/218 (56%), Positives = 143/218 (65%), Gaps = 19/218 (8%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIF TLQGEGG AG AVFCRF+GCNLW+GREQDR A C+FCDTDFVG GT GG Sbjct: 3 YSVKEIFYTLQGEGGQAGTPAVFCRFAGCNLWTGREQDRAQAICQFCDTDFVGTDGTLGG 62 Query: 64 RYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ LA I QW G R VLTGGEPLLQVD LI AL+ + F IAVE+NGT+ Sbjct: 63 KFETAAALAQSIAAQWPAGAGH-RLVVLTGGEPLLQVDSELIAALHAQQFRIAVESNGTV 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD---------FERFSL 173 P+GIDW+C+SPKAG + GQELKLV+PQ GFD F L Sbjct: 122 AAPEGIDWLCISPKAGAPFVQRSGQELKLVWPQP--------GFDLGALERETHFTHRFL 173 Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 QPMDGP +NT I+ C +P WRLS+QTHK GIR Sbjct: 174 QPMDGPLQRQNTAACIAACLAHPAWRLSLQTHKLTGIR 211 >gi|126665591|ref|ZP_01736573.1| Organic radical activating enzyme [Marinobacter sp. ELB17] gi|126630219|gb|EBA00835.1| Organic radical activating enzyme [Marinobacter sp. ELB17] Length = 218 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 115/218 (52%), Positives = 139/218 (63%), Gaps = 11/218 (5%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y +KE F TLQGEG AGR AVFCRFS CNLW+GRE+DR +A C FCDTDFVG G G Sbjct: 1 MYRVKEAFYTLQGEGAQAGRAAVFCRFSKCNLWTGREKDRATAVCDFCDTDFVGTDGQNG 60 Query: 63 GRYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 G + + LA I W + Y V TGGEPLLQ+D PLI AL++ GFEI VETNGT Sbjct: 61 GVFATPEALAAHIAGLWPVAPGK-PYVVCTGGEPLLQLDSPLINALHQAGFEIGVETNGT 119 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + P GIDW+CVSPKA + I+ ELKLV+PQ+ PE ++ + F L PM P + Sbjct: 120 LPAPAGIDWLCVSPKADAPVVIERCNELKLVYPQLKAMPERFLHIQADHFFLSPMASPSV 179 Query: 182 EE---------NTNLAISYCFQNPKWRLSVQTHKFIGI 210 E NT A YC NP+WRL++Q HK IGI Sbjct: 180 PETSTDVIKQSNTRRATDYCLANPRWRLTLQMHKIIGI 217 >gi|152996126|ref|YP_001340961.1| hypothetical protein Mmwyl1_2104 [Marinomonas sp. MWYL1] gi|150837050|gb|ABR71026.1| conserved hypothetical protein [Marinomonas sp. MWYL1] Length = 216 Score = 227 bits (579), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 108/216 (50%), Positives = 140/216 (64%), Gaps = 9/216 (4%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +YSIKE F +LQGEG HAGR A+FCRF+GCNLWSG E+ R +++C+FCDTDF+G G G Sbjct: 1 MYSIKEAFYSLQGEGAHAGRPALFCRFTGCNLWSGSEKTRATSECQFCDTDFIGTNGQHG 60 Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 G++ QL ++ W G+ +Y V TGGEP LQ+D +I + G+ IA+ETNGT Sbjct: 61 GKFKTAGQLRTHLDALWPVGQGH-KYVVFTGGEPALQLDNAIISEMKLYGYTIAIETNGT 119 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 I P GIDWICVSPK L + G ELKLV+PQ ++SPE + DF F LQPMD L Sbjct: 120 IALPDGIDWICVSPKTNKPLVVNKGDELKLVYPQSHLSPELFEALDFTNFYLQPMDQSHL 179 Query: 182 E-------ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + YC +P+WRLS+QTHK + I Sbjct: 180 TAEQIPLLDTQQATLHYCLSHPRWRLSLQTHKMLNI 215 >gi|87122356|ref|ZP_01078237.1| hypothetical protein MED121_00365 [Marinomonas sp. MED121] gi|86162331|gb|EAQ63615.1| hypothetical protein MED121_00365 [Marinomonas sp. MED121] Length = 216 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 106/215 (49%), Positives = 139/215 (64%), Gaps = 7/215 (3%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +YSIKE F +LQGEG AGR ++FCRFSGCNLW+G+E R + C+FCDTDF+G+ G G Sbjct: 1 MYSIKEAFYSLQGEGAQAGRPSIFCRFSGCNLWNGKETHRFDSLCQFCDTDFIGVDGQNG 60 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 G++ + L + ++ +Y V TGGEP LQ+D LI A+ + G+ I +ETNGT Sbjct: 61 GKFKQAKTLALHLDALWPNDQSDKYVVFTGGEPALQLDAALILAMKEMGYVIGIETNGTK 120 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL- 181 P GIDWICVSPK +L I+ G ELKLV+PQ +++P Y DF+ F LQPMD L Sbjct: 121 PLPDGIDWICVSPKTADELVIQQGHELKLVYPQSHLNPNKYTHLDFDTFYLQPMDQSHLP 180 Query: 182 ------EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E ++YC NPKWRLS+QTHK + I Sbjct: 181 KDRISPESTLKQTLNYCLANPKWRLSLQTHKILEI 215 >gi|120553050|ref|YP_957401.1| organic radical activating enzyme [Marinobacter aquaeolei VT8] gi|120322899|gb|ABM17214.1| organic radical activating enzyme [Marinobacter aquaeolei VT8] Length = 218 Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 113/219 (51%), Positives = 142/219 (64%), Gaps = 13/219 (5%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y +KE F TLQGEG AGR AVFCRFS CNLW+GRE+DR +A C FCDTDFVG G G Sbjct: 1 MYRVKEAFYTLQGEGAQAGRAAVFCRFSKCNLWTGREKDRANAVCNFCDTDFVGTDGQNG 60 Query: 63 GRYNV-DQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GR++ + LA I W + GR Y V TGGEPLLQ+D PLI+A ++ GFE+ VETNG Sbjct: 61 GRFDTPEALAAHIRSLW--PDAPGRPYVVCTGGEPLLQLDEPLIRAFHRAGFEVGVETNG 118 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T+ P+GIDW+CVSPKA ++ I ELKLV+PQ PE ++ + L PM P Sbjct: 119 TLPAPEGIDWLCVSPKADAEVVIAECDELKLVYPQPLAPPERFLHIRARHYFLSPMASPS 178 Query: 181 LEE---------NTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E NT A YC +P+WRL++Q HK +GI Sbjct: 179 VPEGGPDAIKQSNTRKATDYCLAHPQWRLTLQMHKILGI 217 >gi|46200887|ref|ZP_00056296.2| COG0602: Organic radical activating enzymes [Magnetospirillum magnetotacticum MS-1] Length = 202 Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 118/208 (56%), Positives = 147/208 (70%), Gaps = 10/208 (4%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y+++EIF +LQGEG AGR AVF RFSGCNLWSGR++DR A CRFCDTDFVG G Sbjct: 3 YTVREIFHSLQGEGVQAGRAAVFLRFSGCNLWSGRQEDRAKAVCRFCDTDFVG-----GV 57 Query: 64 RYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +Y+ Q LA+ ++ + G RY V+TGGEP LQ+D LI AL+ GF +AVETNGT+ Sbjct: 58 KYSDAQSLAEAVKA--VGGST--RYVVVTGGEPGLQLDETLIHALHGLGFSVAVETNGTL 113 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P G+DW+CVSPKAG +L + G ELKLVFPQ +PE + DF F LQPMDGP Sbjct: 114 GLPSGLDWVCVSPKAGTELMVTRGDELKLVFPQDGAAPEAFEHLDFAHFLLQPMDGPDRA 173 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT AI++C +P+WRLS+QTHK +GI Sbjct: 174 ANTAAAIAHCLTHPRWRLSLQTHKIVGI 201 >gi|94495452|ref|ZP_01302032.1| hypothetical protein SKA58_05370 [Sphingomonas sp. SKA58] gi|94424840|gb|EAT09861.1| hypothetical protein SKA58_05370 [Sphingomonas sp. SKA58] Length = 215 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 111/213 (52%), Positives = 138/213 (64%), Gaps = 5/213 (2%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE+FLTLQGEG AGR AVF RF+GCNLWSGREQDR SA CRFCDTDFVG G GG Sbjct: 3 YAVKEMFLTLQGEGVQAGRRAVFLRFAGCNLWSGREQDRASAVCRFCDTDFVGTDGLGGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 ++ + EGRY VLTGGEP+LQVD L+ AL+ RGF IA+E+NGT+ Sbjct: 63 KFADAEALADAALGLWGEGAEGRYIVLTGGEPMLQVDDALVDALHDRGFTIAIESNGTLA 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----VSPENYIGFDFERFSLQPMDG 178 GIDWICVSPKAG D+ + G ELKLV+PQ + + F +QP+D Sbjct: 123 AHPGIDWICVSPKAGSDVVQRSGHELKLVWPQPGGGHSLADVDAMARWAFAHHLIQPLDD 182 Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +N AI+ P+WRL+VQ HK++G+R Sbjct: 183 AHAPDNARAAIALVMDRPQWRLTVQAHKYLGLR 215 >gi|78485139|ref|YP_391064.1| hypothetical protein Tcr_0794 [Thiomicrospira crunogena XCL-2] gi|78363425|gb|ABB41390.1| conserved hypothetical protein [Thiomicrospira crunogena XCL-2] Length = 218 Score = 223 bits (569), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 109/215 (50%), Positives = 143/215 (66%), Gaps = 8/215 (3%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y IKE F +LQGEG H+GR A+FCRF+ CNLW+GRE DR +A C+FCDTDF+G G GG Sbjct: 3 YRIKEAFYSLQGEGFHSGRPAIFCRFTNCNLWTGREADRSNAVCQFCDTDFLGTDGQNGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGR----YCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 + + D LA + W T + + + VLTGGEPLLQVD LI ++ GFEIAVET Sbjct: 63 SFKDADSLAKHLLALWPTDKNDQACPHPFVVLTGGEPLLQVDQTLIDVFHQHGFEIAVET 122 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178 NGT + P+ IDWICVSPKA L + G ELKLV+PQ + P+ +F+ F LQ MD Sbjct: 123 NGTQKAPKNIDWICVSPKANAPLILDSGDELKLVYPQTELRPKQVETLNFKHFYLQAMDD 182 Query: 179 P---FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E+N ++YC ++P+W+LS+QTHK +G+ Sbjct: 183 ADPDIQEKNLKETLAYCLKHPQWKLSLQTHKILGV 217 >gi|170744629|ref|YP_001773284.1| radical SAM domain-containing protein [Methylobacterium sp. 4-46] gi|168198903|gb|ACA20850.1| Radical SAM domain protein [Methylobacterium sp. 4-46] Length = 210 Score = 222 bits (566), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 116/207 (56%), Positives = 141/207 (68%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG AGR AVFCRF+GCNLWSGRE DR A C FCDTDFVG G GG Sbjct: 3 YAVKEIFHTLQGEGAQAGRAAVFCRFAGCNLWSGREADRAEAVCHFCDTDFVGTDGAGGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R+ + G + V TGGEPLLQ+D L+ A+ RGF AVETNGT E Sbjct: 63 RFPDAEALAAAIAAAWEGGPRNHFVVFTGGEPLLQLDAALLAAVRARGFAAAVETNGTQE 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 P+G+DWICVSPKAG L++ G ELKLV+PQ ++PE+ G DF F LQPMDGP Sbjct: 123 APEGLDWICVSPKAGAPLRLTRGDELKLVYPQAGLAPEDVAGLDFRHFFLQPMDGPDRAA 182 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 + A+++C ++ +WRLS+QTHK IGI Sbjct: 183 HLAAAVAHCRRDARWRLSLQTHKLIGI 209 >gi|171463302|ref|YP_001797415.1| Radical SAM domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192840|gb|ACB43801.1| Radical SAM domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 198 Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 112/198 (56%), Positives = 139/198 (70%), Gaps = 8/198 (4%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y++KE F LQGEG HAGR AVFCRF+GCNLWSGRE+DR +A C+FCDTDFVG G G Sbjct: 1 MYTVKEPFPILQGEGAHAGRAAVFCRFAGCNLWSGREEDRGAAICQFCDTDFVGSDGLGG 60 Query: 63 GRY-NVDQLADLIEEQW--ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 G++ + LAD IE W + + RY V TGGEPLLQ+D LI AL+++GF +A+ETN Sbjct: 61 GKFETANALADAIESSWRSTSAGPQQRYVVFTGGEPLLQLDDELIAALHQKGFAVAIETN 120 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS-----LQ 174 GTI+ P+GIDW+CVSPKAG +L + ELKLV PQ + S I FE+ LQ Sbjct: 121 GTIKIPKGIDWVCVSPKAGSELIVLQADELKLVVPQQDHSELEKIVARFEKMDYRNRFLQ 180 Query: 175 PMDGPFLEENTNLAISYC 192 PMDGP L+ NT LA+S C Sbjct: 181 PMDGPGLKSNTELAVSLC 198 >gi|149377359|ref|ZP_01895104.1| Organic radical activating enzyme [Marinobacter algicola DG893] gi|149358371|gb|EDM46848.1| Organic radical activating enzyme [Marinobacter algicola DG893] Length = 218 Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 110/219 (50%), Positives = 137/219 (62%), Gaps = 13/219 (5%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y +KE F TLQGEG AGR AVFCRFS CNLW+GRE+DR +A C FCDTDFVG G G Sbjct: 1 MYRVKEAFYTLQGEGAQAGRAAVFCRFSKCNLWTGREKDRANAVCSFCDTDFVGTDGQNG 60 Query: 63 GRY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 G++ D LA I W + GR Y V TGGEPLLQ+D L+ A ++ GFE+ VETNG Sbjct: 61 GQFETADALAAHIRRLW--PDAPGRPYVVCTGGEPLLQLDDQLVDAFHRAGFEVGVETNG 118 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T+ P GIDW+CVSPKA + ++ ELK+V+PQ PE + + L PM P Sbjct: 119 TLPAPSGIDWLCVSPKADAPVVLRQCDELKVVYPQPLAMPERFTDIQASHYFLSPMASPT 178 Query: 181 LEE---------NTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E NT A YC +P+WRL++Q HK IGI Sbjct: 179 VSEGEPDPIKQSNTRKATDYCLTHPRWRLTLQMHKIIGI 217 >gi|149926775|ref|ZP_01915035.1| hypothetical protein LMED105_08825 [Limnobacter sp. MED105] gi|149824704|gb|EDM83920.1| hypothetical protein LMED105_08825 [Limnobacter sp. MED105] Length = 216 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 109/215 (50%), Positives = 140/215 (65%), Gaps = 5/215 (2%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y++KE+F TLQGEG AGR AVFCRF+GCNLW+GRE+DR +A C+FCDTDFVG G Sbjct: 1 MATYTVKEMFYTLQGEGAQAGRAAVFCRFAGCNLWTGREEDRATAVCKFCDTDFVGTDGV 60 Query: 61 KGGRY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 GG++ + LA I + + G + Y V TGGEP LQ+D LI A++ +GFEIA+ET Sbjct: 61 GGGKFKDAVALAQAIADTYQGGLGTAKPYVVFTGGEPTLQLDSALIDAVHAQGFEIAIET 120 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178 NGT+ P+G+DWICVSPK G +L G ELK+V PQ+ F+ + +Q MD Sbjct: 121 NGTLPVPEGVDWICVSPKFGSELVQTRGHELKVVVPQLGQDLNALGQLQFDHYFVQAMDD 180 Query: 179 ---PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +N AI C P+WRLSVQTHK IG+ Sbjct: 181 TDPAKKAKNMQAAIQTCLNKPQWRLSVQTHKVIGM 215 >gi|88800853|ref|ZP_01116408.1| Organic radical activating enzyme [Reinekea sp. MED297] gi|88776426|gb|EAR07646.1| Organic radical activating enzyme [Reinekea sp. MED297] Length = 217 Score = 219 bits (557), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 105/215 (48%), Positives = 140/215 (65%), Gaps = 9/215 (4%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KE+F TLQGEG H GR AVFCRFSGCNLW+GRE+DR ++ CRFCDTDFVG G GG Sbjct: 3 YSVKEMFYTLQGEGFHTGRPAVFCRFSGCNLWNGREKDRATSICRFCDTDFVGTDGQNGG 62 Query: 64 RYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ +LA I + W ++ R+ V TGGEP LQ+D LI AL+ GFE AVE+NGT+ Sbjct: 63 KFREARELAQRIADFW-PADQAHRFVVFTGGEPALQLDETLIAALHDVGFECAVESNGTL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD----- 177 P +DW+C+SPK ++ I+ ELKLVFPQ + PE + + L P++ Sbjct: 122 PLPPSLDWVCISPKGSAEVVIEACDELKLVFPQADAQPERFSHIHAQHRFLSPLNDWTQA 181 Query: 178 --GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P NT + YC ++P+WRL++QTHK + I Sbjct: 182 QLSPAQNNNTQACVQYCLEHPQWRLTLQTHKVLNI 216 >gi|317486302|ref|ZP_07945134.1| radical SAM domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316922472|gb|EFV43726.1| radical SAM domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 218 Score = 216 bits (549), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 111/213 (52%), Positives = 137/213 (64%), Gaps = 7/213 (3%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y +KEIF TLQGEG AGR AVFCRFSGCNLWSGR +DR +A+CRFCDTDFVG G Sbjct: 8 YRVKEIFYTLQGEGAQAGRPAVFCRFSGCNLWSGRPEDRATAKCRFCDTDFVGADA--GV 65 Query: 64 RYNVDQLADLIEEQWITGEKE---GR--YCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 ++LA I + + GR Y V TGGEP LQ+ LI L+ GFE+ VE+ Sbjct: 66 FATAEELAQTIAATFPVLAPQAYGGRKPYIVFTGGEPALQLTRELIDRLHALGFELGVES 125 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178 NGT+ P+G+DWI VSPK L G ELKLV+PQ SPE++ DF F LQP D Sbjct: 126 NGTLPLPEGLDWITVSPKGSNPLATTSGHELKLVWPQQGCSPEDFEDLDFRHFLLQPCDD 185 Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 P + NT I+YC +P+W L +QTHK++G+R Sbjct: 186 PRNKANTRECIAYCLLHPRWSLGLQTHKWVGVR 218 >gi|120601647|ref|YP_966047.1| hypothetical protein Dvul_0597 [Desulfovibrio vulgaris DP4] gi|120561876|gb|ABM27620.1| conserved hypothetical protein [Desulfovibrio vulgaris DP4] Length = 216 Score = 214 bits (544), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 109/213 (51%), Positives = 135/213 (63%), Gaps = 6/213 (2%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y +KEIF TLQGEG AGR AVFCRFSGCNLW+GR QDR +A C FCDTDFVG G GG Sbjct: 3 YRVKEIFHTLQGEGMRAGRAAVFCRFSGCNLWTGRAQDRPAAVCPFCDTDFVGTDGPGGG 62 Query: 64 RYNVDQLADLIEEQ---WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + + TGE Y V TGGEP LQ+D PLI L+ G E+A+ETNG Sbjct: 63 VFEDAATLAAAILAAFPYKTGEGYRPYVVFTGGEPALQLDRPLIDILHAHGCEVAIETNG 122 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG-- 178 T+ P+GIDW+ VSPKAG L + G ELKLV+PQ + PE+Y F +QP DG Sbjct: 123 TVRLPEGIDWVTVSPKAGTRLAVTSGDELKLVWPQQGICPESYESLAFTYLLMQPRDGLG 182 Query: 179 -PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + A+ +C +P+WRL +QTHK++GI Sbjct: 183 DAGRGDAESEAVRWCLAHPRWRLCLQTHKYLGI 215 >gi|121997906|ref|YP_001002693.1| radical SAM domain-containing protein [Halorhodospira halophila SL1] gi|121589311|gb|ABM61891.1| Radical SAM domain protein [Halorhodospira halophila SL1] Length = 209 Score = 213 bits (543), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 110/208 (52%), Positives = 138/208 (66%), Gaps = 3/208 (1%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++ +F TLQGEG +GR AVF RF+GCNLWSGRE DR +A C FCDTDFVG G GG Sbjct: 3 YAVHSLFYTLQGEGARSGRPAVFLRFAGCNLWSGREADRATAVCTFCDTDFVGTGGPGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ + +LA + W G + Y V TGGEP LQ+D L+ AL+ RGFE+AVETNGT+ Sbjct: 63 RFADAPELAAAVAAWWPGGGEP--YVVCTGGEPALQLDAALVAALHARGFEVAVETNGTL 120 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P G+DWICVSPKAG +L I G ELKL++PQ P+ + F RF LQP+D Sbjct: 121 PLPAGVDWICVSPKAGTELAITAGDELKLIYPQPGAEPQRFTHLAFRRFYLQPLDDNQRG 180 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +T + YC +P+W LSVQ HK +GI Sbjct: 181 AHTRAVLDYCRGHPQWWLSVQIHKDLGI 208 >gi|46581062|ref|YP_011870.1| hypothetical protein DVU2658 [Desulfovibrio vulgaris str. Hildenborough] gi|46450483|gb|AAS97130.1| conserved hypothetical protein [Desulfovibrio vulgaris str. Hildenborough] gi|311234739|gb|ADP87593.1| Radical SAM domain protein [Desulfovibrio vulgaris RCH1] Length = 216 Score = 211 bits (536), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 108/213 (50%), Positives = 134/213 (62%), Gaps = 6/213 (2%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y +KEIF TLQGEG AGR AVFCRFSGCNLW+G QDR +A C FCDTDFVG G GG Sbjct: 3 YRVKEIFHTLQGEGMRAGRAAVFCRFSGCNLWTGWAQDRPAAVCPFCDTDFVGTDGPGGG 62 Query: 64 RYNVDQLADLIEEQ---WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + + TGE Y V TGGEP LQ+D PLI L+ G E+A+ETNG Sbjct: 63 VFEDAATLAAAILAAFPYKTGEGYRPYVVFTGGEPALQLDRPLIDILHAHGCEVAIETNG 122 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG-- 178 T+ P+GIDW+ VSPKAG L + G ELKLV+PQ + PE+Y F +QP DG Sbjct: 123 TVRLPEGIDWVTVSPKAGTRLAVTSGDELKLVWPQQGICPESYESLAFTYLLMQPRDGLG 182 Query: 179 -PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + A+ +C +P+WRL +QTHK++GI Sbjct: 183 DAGRGDAESEAVRWCLAHPRWRLCLQTHKYLGI 215 >gi|144898951|emb|CAM75815.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense MSR-1] Length = 210 Score = 210 bits (535), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 110/212 (51%), Positives = 133/212 (62%), Gaps = 10/212 (4%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y +KE+F TLQGEGG AGR A+F RF+GCNLWSGRE DR +AQC FCDTDFVG G Sbjct: 3 YKVKELFYTLQGEGGQAGRAAIFLRFAGCNLWSGREADRATAQCPFCDTDFVG-----GD 57 Query: 64 RYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +Y W G V+TGGEP LQ+D LIQAL+ G EIAVETNGTI Sbjct: 58 KYADADALAGAVAALWPKGGGGQPLVVITGGEPGLQLDEALIQALHFWGLEIAVETNGTI 117 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP--- 179 P GIDW+CVSPKAG DL+ G E+KLV+PQ + P + F + LQP D P Sbjct: 118 ALPPGIDWVCVSPKAGQDLETIAGDEIKLVWPQDGIDPTRFEKMPFRHYFLQPKDVPGDS 177 Query: 180 -FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + ++YC +P+WRLS+QTHK +GI Sbjct: 178 AAQAAHLQACVAYCLTHPRWRLSLQTHKILGI 209 >gi|121608068|ref|YP_995875.1| hypothetical protein Veis_1081 [Verminephrobacter eiseniae EF01-2] gi|121552708|gb|ABM56857.1| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2] Length = 222 Score = 209 bits (532), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 122/211 (57%), Positives = 143/211 (67%), Gaps = 4/211 (1%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIF TLQGEGG G AVFCRF+GCNLWSGRE DR A CRFCDTDFVG GT GG Sbjct: 13 YSVKEIFYTLQGEGGQTGMPAVFCRFAGCNLWSGREADRADALCRFCDTDFVGTDGTLGG 72 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ D LA+ I QW + R VLTGGEPLLQVD L+ AL+ + F IAVETNG++ Sbjct: 73 KFAQADALAERIAAQWPAADSAHRLVVLTGGEPLLQVDAALLAALHAQQFRIAVETNGSL 132 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFSLQPMDGPF 180 P GIDW+CVSPKAG GQELKLV+PQ ++++ G RF LQPMDGP Sbjct: 133 AAPPGIDWLCVSPKAGAPWVQTQGQELKLVWPQAGMDLAAIARTGQFTHRF-LQPMDGPD 191 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + + I+ C Q P WRLS+QTHK GIR Sbjct: 192 QAAHIAICIAACLQQPLWRLSLQTHKISGIR 222 >gi|218886225|ref|YP_002435546.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757179|gb|ACL08078.1| radical SAM domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 224 Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 110/228 (48%), Positives = 135/228 (59%), Gaps = 26/228 (11%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y +KEIF +LQGEG HAGR AVFCRFSGCNLW+GREQDR A CRFCDTDF G G GG Sbjct: 3 YRVKEIFHSLQGEGVHAGRAAVFCRFSGCNLWTGREQDRPDAACRFCDTDFTGTDGPGGG 62 Query: 64 RYNVDQ-------------LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110 + Q LA L W Y V TGGEP LQ+ L+ AL+ Sbjct: 63 VFEDAQALAAAILAAFPYPLAPLDGGGWRP------YVVFTGGEPALQLTPELLDALHAH 116 Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 G + VETNGT+ P G+DW+ VSPKAG L + G ELKLV+PQ V P ++ G DF Sbjct: 117 GCQCGVETNGTLPLPAGLDWVTVSPKAGTRLAVTRGDELKLVWPQDGVDPADFAGLDFGH 176 Query: 171 FSLQPMD-------GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 F LQP D ++ + +C ++P+WRL +QTHK++GIR Sbjct: 177 FILQPRDDAARGAGAQAGADHIAACVRHCLEHPRWRLGLQTHKYLGIR 224 >gi|94500711|ref|ZP_01307241.1| Organic radical activating enzyme [Oceanobacter sp. RED65] gi|94427266|gb|EAT12246.1| Organic radical activating enzyme [Oceanobacter sp. RED65] Length = 223 Score = 206 bits (523), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 100/217 (46%), Positives = 134/217 (61%), Gaps = 10/217 (4%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 +++KE F TLQGEG AGR +VF RFS CNLW+G+E R +A C+FCDTD VG G GG Sbjct: 6 FNVKEAFYTLQGEGARAGRASVFIRFSKCNLWNGKESGRGAAVCQFCDTDIVGTDGQNGG 65 Query: 64 RYNVDQLADLIEEQW--ITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 YN L +L W +T + + + Y V TGGEP LQ+ L+ + GFE AVE+NG Sbjct: 66 TYNQQALVELALSLWPQLTDDTKSKPYVVFTGGEPALQLTESLVSDFQQAGFECAVESNG 125 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM---- 176 T+ P +DW+C+SPK ++ +K ELKLV+PQV++SP+ G F L PM Sbjct: 126 TLPLPTNLDWVCISPKGTSEIVVKQCDELKLVYPQVDLSPDAVSGISASYFYLSPMADYG 185 Query: 177 ---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 G + EN A YC +P+WR+S+QTHK +GI Sbjct: 186 EQNSGMIIRENMQAATQYCLDHPQWRMSLQTHKLLGI 222 >gi|94987241|ref|YP_595174.1| hypothetical protein LI0799 [Lawsonia intracellularis PHE/MN1-00] gi|94731490|emb|CAJ54853.1| conserved hypothetical protein [Lawsonia intracellularis PHE/MN1-00] Length = 212 Score = 204 bits (520), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 105/212 (49%), Positives = 135/212 (63%), Gaps = 6/212 (2%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV----GIQG 59 + IKE+F T+QGEG GR AVFCRFSGCNLWSG+E+DR A+C+FCDTDF+ GI Sbjct: 3 FYIKELFYTIQGEGVQTGRPAVFCRFSGCNLWSGKEKDRAIAKCQFCDTDFLNADFGILD 62 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 ++ V + + T Y V TGGEP LQ++ +I L+K EIA+ETN Sbjct: 63 SEEQL--VANILQTFPQNNYTHPSYKPYVVFTGGEPSLQLNQVIINLLHKYHIEIAIETN 120 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GTI P+ IDWI VSPK G +L G ELKLV+PQ N PE Y+ +F+ F LQP D Sbjct: 121 GTIPLPKHIDWITVSPKEGNELVTTVGNELKLVWPQQNCDPEKYLTLEFDNFILQPKDDK 180 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 L N + I YC ++P W+L +Q+HK+IGIR Sbjct: 181 NLSNNIQICIEYCMKHPYWKLGLQSHKWIGIR 212 >gi|254246872|ref|ZP_04940193.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] gi|124871648|gb|EAY63364.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] Length = 207 Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 88/148 (59%), Positives = 106/148 (71%), Gaps = 2/148 (1%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G GG Sbjct: 3 YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG++ Sbjct: 63 KFKDAAALVATIAGLWPEGEAN-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELK 150 + IDWICVSPKA L + G ELK Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELK 149 >gi|268315892|ref|YP_003289611.1| queuosine biosynthesis protein QueE [Rhodothermus marinus DSM 4252] gi|262333426|gb|ACY47223.1| queuosine biosynthesis protein QueE [Rhodothermus marinus DSM 4252] Length = 233 Score = 160 bits (406), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 105/241 (43%), Positives = 135/241 (56%), Gaps = 40/241 (16%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLS------AQC-RFCDTD 53 M+ Y +KEI+ TLQGEG AGR AVF RF GCNLWSGR++DR A C R+CDTD Sbjct: 1 MRSYRVKEIWKTLQGEGFFAGRPAVFVRFVGCNLWSGRDEDRARDARRTGADCPRWCDTD 60 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 F +G++ Y D+L ++E + G + +CVLTGGEPLLQ+D L++AL G+ Sbjct: 61 FRK-EGSRA--YTADELVAAMQE--VGGPIQ--FCVLTGGEPLLQLDAALMRALKAAGYF 113 Query: 114 IAVETNGTI-------EPPQG----IDWICVSPKAGCD-LKIKGGQELKLVFPQVNVSPE 161 +A+ETNGTI +P G DWI SPK D L ++ ELKLV P + PE Sbjct: 114 VAIETNGTISLREACTDPETGQVVAPDWIVCSPKLPEDRLALEYFDELKLVVP--DYRPE 171 Query: 162 NYIGF------------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209 Y F LQP DGP L E A+ +P WR+SVQTHK +G Sbjct: 172 QYARFARRARPHRVGGRRIPLLWLQPEDGPRLAEAQRCAVELALAHPDWRVSVQTHKILG 231 Query: 210 I 210 + Sbjct: 232 V 232 >gi|299141903|ref|ZP_07035038.1| organic radical activating enzyme [Prevotella oris C735] gi|298576754|gb|EFI48625.1| organic radical activating enzyme [Prevotella oris C735] Length = 190 Score = 144 bits (363), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 88/213 (41%), Positives = 115/213 (53%), Gaps = 28/213 (13%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 K Y + EIF +LQGEG + GR AVF RFSGCNL +C FCDTDF Sbjct: 3 KTYKVNEIFYSLQGEGRNTGRAAVFIRFSGCNL-----------KCSFCDTDFKLYH--- 48 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + + D + E W K + VLTGGEP LQVD LI AL+ GF +A+E+NGT Sbjct: 49 --EMTAEAIVDAVRE-W----KTAGFVVLTGGEPTLQVDSQLIDALHAEGFYVAMESNGT 101 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 PP +DW+ +SPK + + ELK +F P + +G + + + LQP D Sbjct: 102 NVPPANLDWLTISPKE--HVVVTECNELKCIFD--GQKPVDDLGIEADYYYLQPCDVGND 157 Query: 182 EEN---TNLAISYCFQNPKWRLSVQTHKFIGIR 211 +N T I Y +PKWRLS+QTHK IG + Sbjct: 158 VQNRAITQACIRYIASHPKWRLSLQTHKMIGFQ 190 >gi|281426145|ref|ZP_06257058.1| radical SAM domain protein [Prevotella oris F0302] gi|281399721|gb|EFB30552.1| radical SAM domain protein [Prevotella oris F0302] Length = 190 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 89/213 (41%), Positives = 115/213 (53%), Gaps = 28/213 (13%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 K Y + EIF +LQGEG + GR AVF RFSGCNL +C FCDTDF + Sbjct: 3 KTYKVNEIFYSLQGEGRNTGRAAVFIRFSGCNL-----------KCSFCDTDF-KLYHEM 50 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 VD + D W K + VLTGGEP LQVD LI AL+ GF +A+E+NGT Sbjct: 51 TAEAIVDAVRD-----W----KTAGFVVLTGGEPTLQVDGKLIDALHAEGFYVAMESNGT 101 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 PP +DW+ +SPK + + ELK +F P + +G + + + LQP D Sbjct: 102 NVPPPNLDWLTISPKE--HVVVTECNELKCIFD--GQKPVDDLGIEADYYYLQPCDVGND 157 Query: 182 EEN---TNLAISYCFQNPKWRLSVQTHKFIGIR 211 +N T I Y +PKWRLS+QTHK IG + Sbjct: 158 VQNRTITQACIRYIASHPKWRLSLQTHKMIGFQ 190 >gi|315607677|ref|ZP_07882671.1| GntS protein [Prevotella buccae ATCC 33574] gi|315250613|gb|EFU30608.1| GntS protein [Prevotella buccae ATCC 33574] Length = 210 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 93/221 (42%), Positives = 119/221 (53%), Gaps = 25/221 (11%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-QG 59 MK Y I EIF +LQGEG + GR AVF RFSGCNL C FCDTDF + Sbjct: 5 MKRYRINEIFYSLQGEGRNTGRAAVFVRFSGCNL-----------ACSFCDTDFRAYREM 53 Query: 60 TKGGRYNVDQ--LADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGF-E 113 T N + L ++ + G R VLTGGEP LQVD LI AL+ GF E Sbjct: 54 TSDEVVNTVKGILPSFVDNRSGEGVGTARSSVLVVLTGGEPTLQVDFDLIDALHHAGFPE 113 Query: 114 IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173 +A+E+NGT EPP +DW+ VSPK + + ELK +F + + + I DF + L Sbjct: 114 VAMESNGTKEPPPNLDWLTVSPKE--QVSVNRCNELKCLFDESGRADDCGIRADF--YYL 169 Query: 174 QPMDGPFLEENTNLAIS---YCFQNPKWRLSVQTHKFIGIR 211 QP D N + + Y Q+PKW+LS+QTHK IG + Sbjct: 170 QPCDTGDPVRNAEIIAACTEYIKQHPKWQLSLQTHKLIGFK 210 >gi|288924671|ref|ZP_06418608.1| radical SAM [Prevotella buccae D17] gi|288338458|gb|EFC76807.1| radical SAM [Prevotella buccae D17] Length = 206 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 93/221 (42%), Positives = 119/221 (53%), Gaps = 25/221 (11%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-QG 59 MK Y I EIF +LQGEG + GR AVF RFSGCNL C FCDTDF + Sbjct: 1 MKRYRINEIFYSLQGEGRNTGRAAVFVRFSGCNL-----------ACSFCDTDFRAYREM 49 Query: 60 TKGGRYNVDQ--LADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGF-E 113 T N + L ++ + G R VLTGGEP LQVD LI AL+ GF E Sbjct: 50 TSDEVVNTVKGILPSFVDNRSGEGVGTARSSVLVVLTGGEPTLQVDFDLIDALHHAGFPE 109 Query: 114 IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173 +A+E+NGT EPP +DW+ VSPK + + ELK +F + + + I DF + L Sbjct: 110 VAMESNGTKEPPPNLDWLTVSPKE--QVSVNRCNELKCLFDESGRADDCGIRADF--YYL 165 Query: 174 QPMDGPFLEENTNLAIS---YCFQNPKWRLSVQTHKFIGIR 211 QP D N + + Y Q+PKW+LS+QTHK IG + Sbjct: 166 QPCDTGDPVRNAEIIAACTEYIKQHPKWQLSLQTHKLIGFK 206 >gi|300727783|ref|ZP_07061165.1| organic radical activating enzyme [Prevotella bryantii B14] gi|299774936|gb|EFI71546.1| organic radical activating enzyme [Prevotella bryantii B14] Length = 196 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 84/217 (38%), Positives = 118/217 (54%), Gaps = 29/217 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ--GT 60 + I EIF +LQGEG H GR A+F RFSGCNL +C FCDTDF Q Sbjct: 1 MKKINEIFYSLQGEGRHTGRAAIFIRFSGCNL-----------KCSFCDTDFKDYQEMSD 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + Y V++L +++ + +LTGGEP +QVD I + G+ +A+E+NG Sbjct: 50 EDILYKVEELR---KDKIKDAGQPKPMIILTGGEPTMQVDGAFIDMFHAAGYFVAMESNG 106 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP---QVNVSPENYIGFDFERFSLQPMD 177 T EPP+ +DW+ VSPK +K+ ELK +F QV+ G + LQP D Sbjct: 107 TKEPPKQLDWLTVSPKE--HVKVAQCDELKCIFDGEHQVDT-----FGIKAYYYYLQPCD 159 Query: 178 GPFLEENTNL---AISYCFQNPKWRLSVQTHKFIGIR 211 ++N + ++Y Q+PKWRLS+QTHK IG + Sbjct: 160 TGDAQKNQEILSACVAYIEQHPKWRLSLQTHKLIGFK 196 >gi|282879508|ref|ZP_06288242.1| radical SAM domain protein [Prevotella timonensis CRIS 5C-B1] gi|281306655|gb|EFA98681.1| radical SAM domain protein [Prevotella timonensis CRIS 5C-B1] Length = 199 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 118/221 (53%), Gaps = 36/221 (16%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 ++ Y + EIF +LQGEG HAG+ AVF RF+ CNL C FCDT+F Sbjct: 5 VRTYKVNEIFYSLQGEGHHAGKAAVFVRFAKCNL-----------HCSFCDTNF------ 47 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYC---VLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 D+ ++ +Q I ++ C V+TGGEP LQV L+Q + G+ +++E Sbjct: 48 -------DEYTEMSAQQIIENVQQYAPCNFVVITGGEPTLQVTATLLQLFHVHGYYVSME 100 Query: 118 TNGTIEPPQGIDWICVSPKAGC----DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173 TNGT P+G+DWI SPK D++IK E+K+V+ + P + G + E + Sbjct: 101 TNGTHPIPKGVDWITCSPKKAFIEAGDVQIKQANEIKVVYD--GIHPISTFGIEAEERYV 158 Query: 174 QPMDGPFLEENTNL---AISYCFQNPKWRLSVQTHKFIGIR 211 QP D N + AI + +P+W+LS+Q HK IGI+ Sbjct: 159 QPCDVGDESRNKEILQKAIQFVKTHPQWKLSLQLHKLIGIQ 199 >gi|189460362|ref|ZP_03009147.1| hypothetical protein BACCOP_00999 [Bacteroides coprocola DSM 17136] gi|189432914|gb|EDV01899.1| hypothetical protein BACCOP_00999 [Bacteroides coprocola DSM 17136] Length = 181 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/211 (40%), Positives = 112/211 (53%), Gaps = 34/211 (16%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT + Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------KCSFCDTQHEEFR---- 45 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYC---VLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 ++ + I E C +LTGGEP L +D L +AL+ G IA+ETN Sbjct: 46 ----------MMTDDEIIAEVCTYPCQMVILTGGEPGLSIDSQLTKALHAAGKYIAIETN 95 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GT P+ IDW+ SPK G LK+ E+K+V+ +VSP Y+ + LQP G Sbjct: 96 GTCVLPEDIDWVTCSPKEGTTLKLHHIDEVKVVYVGQDVSP--YLKLPAKHHFLQPCSG- 152 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +NTN I+Y ++P+WRLS+QTHK I I Sbjct: 153 ---QNTNDVIAYIKEHPQWRLSLQTHKLIDI 180 >gi|325299596|ref|YP_004259513.1| Radical SAM domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324319149|gb|ADY37040.1| Radical SAM domain protein [Bacteroides salanitronis DSM 18170] Length = 181 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 85/208 (40%), Positives = 116/208 (55%), Gaps = 28/208 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG HAG AVF RFSGCNL +C FCDT GT+ Sbjct: 1 MRKINEIFYSLQGEGAHAGTPAVFVRFSGCNL-----------KCIFCDTSHES--GTEM 47 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 G ++IEE + R ++TGGEP L +D L+ L+K G +AVETNGT Sbjct: 48 GD------EEIIEE---VCKYPCRMVIMTGGEPGLWIDDALVDLLHKAGKYVAVETNGTQ 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+ +DW+ SPK G L+++ E+K+V+ +VSP Y+ + + LQP Sbjct: 99 VLPEAVDWVTCSPKEGTVLRVRHIDEVKVVYIGQDVSP--YLLIEAKEHFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +NT I Y ++P+WRLS+QTHK I I Sbjct: 153 QNTEEVIEYIKKHPQWRLSLQTHKLINI 180 >gi|282878839|ref|ZP_06287606.1| radical SAM domain protein [Prevotella buccalis ATCC 35310] gi|281299047|gb|EFA91449.1| radical SAM domain protein [Prevotella buccalis ATCC 35310] Length = 199 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 117/220 (53%), Gaps = 36/220 (16%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + Y + EIF +LQGEG HAGR AVF RF+ CNL C FCDT+F Sbjct: 6 RTYKVNEIFYSLQGEGHHAGRAAVFVRFAKCNL-----------HCWFCDTNF------- 47 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYC---VLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 D ++ +Q I ++ C V+TGGEP LQV L+Q + G+ +++ET Sbjct: 48 ------DTFTEMSAQQIIENVQQYAPCHFVVITGGEPTLQVTPELLQLFHIHGYYVSMET 101 Query: 119 NGTIEPPQGIDWICVSPKAGC----DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174 NGT P+G+DW+ SPK D+ IK E+K+V+ + P + G + E +Q Sbjct: 102 NGTHPIPKGVDWVTCSPKKAFIEAGDVHIKQANEIKVVYD--GIHPISTFGIESEERYVQ 159 Query: 175 PMD-GPFL--EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 P D G L +E AI + +P+W+LS+Q HK IGI+ Sbjct: 160 PCDVGDELRNKEIMQQAIQFVKTHPQWKLSLQLHKLIGIQ 199 >gi|160887244|ref|ZP_02068247.1| hypothetical protein BACOVA_05261 [Bacteroides ovatus ATCC 8483] gi|315919753|ref|ZP_07915993.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156107655|gb|EDO09400.1| hypothetical protein BACOVA_05261 [Bacteroides ovatus ATCC 8483] gi|313693628|gb|EFS30463.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 183 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 87/217 (40%), Positives = 110/217 (50%), Gaps = 40/217 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + I EIF +LQGEG H G A+F RFSGCNL +C FCDT Q Sbjct: 1 MTMRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDT-----QHE 44 Query: 61 KGGRYNVDQLADLIEEQWITGEKE--GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 +G + +E+ IT K+ VLTGGEP L +D LI L++ G + +ET Sbjct: 45 EGTM--------MTDEEIITKVKKYPAVTVVLTGGEPSLWIDDQLIDLLHQAGKYVTIET 96 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178 NGT P IDW+ SPK G L I E+K+V Y G D F L P + Sbjct: 97 NGTHPLPASIDWVTCSPKQGAKLAIDRMNEVKVV----------YEGQDISIFELLPAEH 146 Query: 179 PFLE----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 FL+ NT L + ++PKWRLS+QTHK I IR Sbjct: 147 FFLQPCSCNNTALTVDCVMRHPKWRLSLQTHKLIDIR 183 >gi|260171438|ref|ZP_05757850.1| hypothetical protein BacD2_06190 [Bacteroides sp. D2] Length = 181 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/215 (40%), Positives = 109/215 (50%), Gaps = 40/215 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G A+F RFSGCNL +C FCDT Q +G Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDT-----QHEEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKE--GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + +E+ IT K+ VLTGGEP L +D LI L++ G + +ETNG Sbjct: 45 TM--------MTDEEIITKVKKYPAVTVVLTGGEPSLWIDDQLIDLLHQAGKYVTIETNG 96 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T P IDW+ SPK G L I E+K+V Y G D F L P + F Sbjct: 97 THPLPASIDWVTCSPKQGAKLAIDRMNEVKVV----------YEGQDISIFELLPAEHFF 146 Query: 181 LE----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 L+ NT L + ++PKWRLS+QTHK I IR Sbjct: 147 LQPCSCNNTALTVDCVMRHPKWRLSLQTHKLIDIR 181 >gi|258647408|ref|ZP_05734877.1| NrdG protein [Prevotella tannerae ATCC 51259] gi|260852776|gb|EEX72645.1| NrdG protein [Prevotella tannerae ATCC 51259] Length = 189 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 84/214 (39%), Positives = 113/214 (52%), Gaps = 28/214 (13%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + I EIF +LQGEG ++G ++F RFSGCNL C FCDT Q Sbjct: 1 MTRFKINEIFYSLQGEGFYSGIASIFIRFSGCNL-----------SCSFCDT-----QHE 44 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 G +Q+ D + ++ VLTGGEP L V LI L+ G + +ETNG Sbjct: 45 TGELMTQEQILDQVTR------FPAKHVVLTGGEPSLFVTKELIDGLHAAGKYVCIETNG 98 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD-GP 179 P+GIDW+ +SPK + +K ELK+VF +P + I + +QP D G Sbjct: 99 LHALPEGIDWVTLSPKTAQTI-LKTCNELKVVFTDDTFNPHDEI--KAAHYFIQPCDMGN 155 Query: 180 FLEENTNLA--ISYCFQNPKWRLSVQTHKFIGIR 211 ++ N LA ISY +NP+WRLS+QTHK IGI Sbjct: 156 SIKNNRILASCISYVKENPRWRLSLQTHKMIGIH 189 >gi|224026000|ref|ZP_03644366.1| hypothetical protein BACCOPRO_02751 [Bacteroides coprophilus DSM 18228] gi|224019236|gb|EEF77234.1| hypothetical protein BACCOPRO_02751 [Bacteroides coprophilus DSM 18228] Length = 181 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 109/208 (52%), Gaps = 28/208 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG HAG AVF RFSGCNL +C FCDT + +G Sbjct: 1 MKKINEIFYSLQGEGYHAGTPAVFVRFSGCNL-----------KCDFCDT-----RHEEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + +E+ R +LTGGEP L +D L+ AL+ G + +ETNGT Sbjct: 45 TEMENGDIVKAVEQY------PCRMVILTGGEPGLWIDSALVDALHASGRYVCIETNGTC 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+ IDW+ SPK G LK+ E+K+V+ +VS + + LQP Sbjct: 99 LLPENIDWVTCSPKQGTSLKVAHVDEVKVVYLGQDVSA--CLDIPARHYFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +NT+ I+Y Q+P WRLS+QTHK I I Sbjct: 153 QNTDEVIAYIKQHPVWRLSLQTHKLINI 180 >gi|298384120|ref|ZP_06993681.1| GntS [Bacteroides sp. 1_1_14] gi|298263724|gb|EFI06587.1| GntS [Bacteroides sp. 1_1_14] Length = 182 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 85/210 (40%), Positives = 110/210 (52%), Gaps = 30/210 (14%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT Q G Sbjct: 2 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCSFCDT-----QHEAG 45 Query: 63 GRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 D++ A++ + +T +LTGGEP L +D LI L+K G + +ETNGT Sbjct: 46 TLMTDDEIIAEVSKYPAVT-------VILTGGEPSLWIDDALIDRLHKAGKYVCIETNGT 98 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 P+ IDW+ SPK G L I E+K+V+ ++S Y E F LQP Sbjct: 99 RPLPESIDWVTCSPKQGVKLGITRMDEVKVVYEGQDIS--IYELLPAEHFFLQPCSC--- 153 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT L + ++PKWRLS+QTHK I IR Sbjct: 154 -NNTALTVDCVMRHPKWRLSLQTHKLIDIR 182 >gi|299148832|ref|ZP_07041894.1| GntS [Bacteroides sp. 3_1_23] gi|298513593|gb|EFI37480.1| GntS [Bacteroides sp. 3_1_23] Length = 183 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 86/216 (39%), Positives = 110/216 (50%), Gaps = 38/216 (17%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + I EIF +LQGEG H G A+F RFSGCNL +C FCDT Q Sbjct: 1 MMMRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDT-----QHE 44 Query: 61 KGGRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 +G D++ A++ + +T VLTGGEP L VD LI L++ G + +ETN Sbjct: 45 EGKMMTDDEIIAEVKKYPAVT-------VVLTGGEPSLWVDDELIDRLHQAGKYVTIETN 97 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GT P IDW+ SPK G L I E+K+V Y G D F L P + Sbjct: 98 GTRPLPVAIDWVTCSPKQGVKLAIDRMDEVKVV----------YEGQDISIFELLPAEHF 147 Query: 180 FLE----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 FL+ NT + ++PKWRLS+QTHK I IR Sbjct: 148 FLQPCSCNNTASTVDCVMRHPKWRLSLQTHKLIDIR 183 >gi|198276623|ref|ZP_03209154.1| hypothetical protein BACPLE_02819 [Bacteroides plebeius DSM 17135] gi|198270148|gb|EDY94418.1| hypothetical protein BACPLE_02819 [Bacteroides plebeius DSM 17135] Length = 181 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 110/208 (52%), Gaps = 28/208 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G Sbjct: 1 MKKINEIFYSLQGEGFHVGTPAVFVRFSGCNL-----------KCEFCDT-----HHEEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + +++ + + + + +LTGGEP L VD LI AL+K G I +ETNGT Sbjct: 45 VMMSDEEIVEKV------CQYPCKTVILTGGEPGLWVDEDLIAALHKAGKYICIETNGTC 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+ IDW+ SPK G L++ E+K+VF +VSP Y+ + LQP Sbjct: 99 VLPESIDWVTCSPKLGAPLRVNRIDEVKVVFLGQDVSP--YLELKASFYFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT + Y +P+WRLS+QTHK I I Sbjct: 153 RNTAEVVEYIKSHPQWRLSLQTHKLIDI 180 >gi|294775146|ref|ZP_06740672.1| conserved hypothetical protein [Bacteroides vulgatus PC510] gi|294450958|gb|EFG19432.1| conserved hypothetical protein [Bacteroides vulgatus PC510] Length = 193 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/210 (37%), Positives = 110/210 (52%), Gaps = 28/210 (13%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + + I EIF +LQGEG H G AVF RFSGCNL +C FCDT Sbjct: 11 LSMRRINEIFYSLQGEGYHTGIPAVFVRFSGCNL-----------RCPFCDTQH------ 53 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + G D+ D++ E + + +LTGGEP L +D L+ AL+ G + +ETNG Sbjct: 54 EEGTLMSDE--DIVME---VAKYSTQVVILTGGEPGLWIDEKLVDALHHEGKYVCIETNG 108 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T P+ IDW+ SPK G + + E+K+V+ +VS Y+ + LQP Sbjct: 109 TCLLPENIDWVTCSPKEGAKINLDRIDEVKVVYVGQDVSA--YLDLSASHYFLQPCSCA- 165 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT I+Y Q+P+WRLS+QTHK + I Sbjct: 166 ---NTEEVIAYILQHPEWRLSLQTHKLLQI 192 >gi|153809323|ref|ZP_01961991.1| hypothetical protein BACCAC_03636 [Bacteroides caccae ATCC 43185] gi|149128093|gb|EDM19314.1| hypothetical protein BACCAC_03636 [Bacteroides caccae ATCC 43185] Length = 181 Score = 127 bits (320), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 82/213 (38%), Positives = 109/213 (51%), Gaps = 36/213 (16%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG + G A+F RFSGCNL +C FCDT Q +G Sbjct: 1 MRKINEIFYSLQGEGYYTGTPAIFIRFSGCNL-----------KCSFCDT-----QHEEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 D++ +++ VLTGGEP L +D LI L++ G + VETNGT Sbjct: 45 TMMTDDEIIAEVKKY------PAVTVVLTGGEPSLWIDATLIDRLHEAGKYVTVETNGTN 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+ +DW+ SPK G +LKI E+K+V Y G D F L P + FL+ Sbjct: 99 PLPESVDWVTCSPKQGVELKINRIDEVKVV----------YEGQDISIFELLPAEHFFLQ 148 Query: 183 E----NTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT + ++PKWRLS+QTHK I IR Sbjct: 149 PCSCINTADTVDCVMRHPKWRLSLQTHKLIDIR 181 >gi|288799933|ref|ZP_06405392.1| GntS [Prevotella sp. oral taxon 299 str. F0039] gi|288333181|gb|EFC71660.1| GntS [Prevotella sp. oral taxon 299 str. F0039] Length = 192 Score = 127 bits (320), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 81/217 (37%), Positives = 110/217 (50%), Gaps = 40/217 (18%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF TLQGEG H GR AVF RF+GCNL C FCDT Sbjct: 3 VNEIFYTLQGEGAHTGRAAVFLRFAGCNL-----------TCSFCDTQH----------- 40 Query: 66 NVDQLADLIEEQWITGEKE--GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 + + EE+ + + + V+TGGEP +Q+ LI L+ G ++ +ETNGTI Sbjct: 41 --ETYTSMSEEEIVISINKFPSTWVVITGGEPTIQLTESLIHKLHAIGKKVQIETNGTII 98 Query: 124 PPQGIDWICVSPK----AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 PP DWI VSPK ++K + ELK+V+ N + Y + + LQP D Sbjct: 99 PPPNTDWITVSPKFEYCKRAEIKAERINELKVVYDGSN-NMSVYETIKADHYFLQPCD-- 155 Query: 180 FLEENT------NLAISYCFQNPKWRLSVQTHKFIGI 210 L++ T N I Y +NPKWRLS+QTHK + + Sbjct: 156 -LQDETKNKKIINQVIEYIKKNPKWRLSLQTHKILNM 191 >gi|29349862|ref|NP_813365.1| hypothetical protein BT_4454 [Bacteroides thetaiotaomicron VPI-5482] gi|29341773|gb|AAO79559.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] Length = 182 Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 84/210 (40%), Positives = 110/210 (52%), Gaps = 30/210 (14%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT Q G Sbjct: 2 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCSFCDT-----QHEAG 45 Query: 63 GRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 D++ A++ + +T +LTGGEP L +D LI L++ G + +ETNGT Sbjct: 46 TLMTDDEIIAEVSKYPAVT-------VILTGGEPSLWIDDALIDRLHEAGKYVCIETNGT 98 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 P+ IDW+ SPK G L I E+K+V+ ++S Y E F LQP Sbjct: 99 RPLPESIDWVTCSPKQGVKLGITRMDEVKVVYEGQDIS--IYELLPAEHFFLQPCSC--- 153 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT L + ++PKWRLS+QTHK I IR Sbjct: 154 -NNTALTVDCVMRHPKWRLSLQTHKLIDIR 182 >gi|253569769|ref|ZP_04847178.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251840150|gb|EES68232.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 181 Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 84/210 (40%), Positives = 110/210 (52%), Gaps = 30/210 (14%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT Q G Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCSFCDT-----QHEAG 44 Query: 63 GRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 D++ A++ + +T +LTGGEP L +D LI L++ G + +ETNGT Sbjct: 45 TLMTDDEIIAEVSKYPAVT-------VILTGGEPSLWIDDALIDRLHEAGKYVCIETNGT 97 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 P+ IDW+ SPK G L I E+K+V+ ++S Y E F LQP Sbjct: 98 RPLPESIDWVTCSPKQGVKLGITRMDEVKVVYEGQDIS--IYELLPAEHFFLQPCSC--- 152 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT L + ++PKWRLS+QTHK I IR Sbjct: 153 -NNTALTVDCVMRHPKWRLSLQTHKLIDIR 181 >gi|262408739|ref|ZP_06085285.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|293369177|ref|ZP_06615771.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f] gi|294647054|ref|ZP_06724666.1| radical SAM domain protein [Bacteroides ovatus SD CC 2a] gi|294807238|ref|ZP_06766052.1| radical SAM domain protein [Bacteroides xylanisolvens SD CC 1b] gi|298481567|ref|ZP_06999759.1| GntS [Bacteroides sp. D22] gi|262353604|gb|EEZ02698.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292635760|gb|EFF54258.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f] gi|292637600|gb|EFF56006.1| radical SAM domain protein [Bacteroides ovatus SD CC 2a] gi|294445536|gb|EFG14189.1| radical SAM domain protein [Bacteroides xylanisolvens SD CC 1b] gi|295087026|emb|CBK68549.1| Organic radical activating enzymes [Bacteroides xylanisolvens XB1A] gi|298272431|gb|EFI14000.1| GntS [Bacteroides sp. D22] Length = 182 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/214 (39%), Positives = 109/214 (50%), Gaps = 38/214 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G A+F RFSGCNL +C FCDT Q +G Sbjct: 2 MRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDT-----QHEEG 45 Query: 63 GRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 D++ A++ + +T VLTGGEP L +D LI L++ G + +ETNGT Sbjct: 46 KMMTDDEIIAEVKKYPAVT-------VVLTGGEPSLWIDDELIDRLHQAGKYVTIETNGT 98 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 P IDW+ SPK G L I E+K+V Y G D F L P + FL Sbjct: 99 RPLPAAIDWVTCSPKQGVKLAIDRMDEVKVV----------YEGQDISIFELLPAEHFFL 148 Query: 182 E----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + NT + ++PKWRLS+QTHK I IR Sbjct: 149 QPCSCNNTASTVDCVMRHPKWRLSLQTHKLIDIR 182 >gi|224538811|ref|ZP_03679350.1| hypothetical protein BACCELL_03706 [Bacteroides cellulosilyticus DSM 14838] gi|224519568|gb|EEF88673.1| hypothetical protein BACCELL_03706 [Bacteroides cellulosilyticus DSM 14838] Length = 181 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/213 (38%), Positives = 109/213 (51%), Gaps = 36/213 (16%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT + +G Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCSFCDT-----RHEEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + D++ + G+ +LTGGEP L +D I L++ G + +ETNGT Sbjct: 45 VLMSDDEIIAEV------GKYPAVTVILTGGEPSLWIDEVFIDRLHQAGKYVCIETNGTN 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 PQ IDW+ SPK G L I E+K+V Y G D E + L P + FL+ Sbjct: 99 PLPQNIDWVTCSPKQGVKLGITRMDEVKVV----------YEGQDIEVYELLPAEYFFLQ 148 Query: 183 ----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT ++ Q+PKWRLS+QTHK I IR Sbjct: 149 PCSCSNTAETVACVMQHPKWRLSLQTHKLIDIR 181 >gi|150004624|ref|YP_001299368.1| hypothetical protein BVU_2083 [Bacteroides vulgatus ATCC 8482] gi|254883105|ref|ZP_05255815.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319643625|ref|ZP_07998245.1| hypothetical protein HMPREF9011_03847 [Bacteroides sp. 3_1_40A] gi|149933048|gb|ABR39746.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] gi|254835898|gb|EET16207.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317384794|gb|EFV65753.1| hypothetical protein HMPREF9011_03847 [Bacteroides sp. 3_1_40A] Length = 181 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/205 (38%), Positives = 108/205 (52%), Gaps = 28/205 (13%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGEG H G AVF RFSGCNL +C FCDT + G Sbjct: 4 INEIFYSLQGEGYHTGIPAVFVRFSGCNL-----------RCPFCDTQH------EEGTL 46 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 D+ D++ E + + +LTGGEP L +D L+ AL+ G + +ETNGT P Sbjct: 47 MSDE--DIVME---VAKYSTQVVILTGGEPGLWIDEKLVDALHHEGKYVCIETNGTCLLP 101 Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185 + IDW+ SPK G + + E+K+V+ +VS Y+ + LQP NT Sbjct: 102 ENIDWVTCSPKEGAKINLDRIDEVKVVYVGQDVSA--YLDLSASHYFLQPCSCA----NT 155 Query: 186 NLAISYCFQNPKWRLSVQTHKFIGI 210 I+Y Q+P+WRLS+QTHK + I Sbjct: 156 EEVIAYILQHPEWRLSLQTHKLLQI 180 >gi|237715731|ref|ZP_04546212.1| conserved hypothetical protein [Bacteroides sp. D1] gi|229444440|gb|EEO50231.1| conserved hypothetical protein [Bacteroides sp. D1] Length = 181 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/214 (39%), Positives = 109/214 (50%), Gaps = 38/214 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G A+F RFSGCNL +C FCDT Q +G Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDT-----QHEEG 44 Query: 63 GRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 D++ A++ + +T VLTGGEP L +D LI L++ G + +ETNGT Sbjct: 45 KMMTDDEIIAEVKKYPAVT-------VVLTGGEPSLWIDDELIDRLHQAGKYVTIETNGT 97 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 P IDW+ SPK G L I E+K+V Y G D F L P + FL Sbjct: 98 RPLPAAIDWVTCSPKQGVKLAIDRMDEVKVV----------YEGQDISIFELLPAEHFFL 147 Query: 182 E----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + NT + ++PKWRLS+QTHK I IR Sbjct: 148 QPCSCNNTASTVDCVMRHPKWRLSLQTHKLIDIR 181 >gi|212693923|ref|ZP_03302051.1| hypothetical protein BACDOR_03445 [Bacteroides dorei DSM 17855] gi|237724017|ref|ZP_04554498.1| conserved hypothetical protein [Bacteroides sp. D4] gi|212663455|gb|EEB24029.1| hypothetical protein BACDOR_03445 [Bacteroides dorei DSM 17855] gi|229437681|gb|EEO47758.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 181 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/205 (38%), Positives = 108/205 (52%), Gaps = 28/205 (13%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGEG H G AVF RFSGCNL +C FCDT Q +G Sbjct: 4 INEIFYSLQGEGYHTGIPAVFVRFSGCNL-----------RCPFCDT-----QHEEGTLM 47 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 + + +A + + + +LTGGEP L +D L+ AL+ G + +ETNGT P Sbjct: 48 SDEDIAMEV------AKYSTQVVILTGGEPGLWIDEKLVDALHHEGKYVCIETNGTCLLP 101 Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185 + IDW+ SPK G + + E+K+V+ +VS Y+ + LQP NT Sbjct: 102 ENIDWVTCSPKEGAKINLDRIDEVKVVYVGQDVSA--YLDLSASHYFLQPCSCA----NT 155 Query: 186 NLAISYCFQNPKWRLSVQTHKFIGI 210 I+Y Q+P+WRLS+QTHK + I Sbjct: 156 EEVIAYILQHPEWRLSLQTHKLLQI 180 >gi|298376715|ref|ZP_06986670.1| hypothetical protein HMPREF0104_02900 [Bacteroides sp. 3_1_19] gi|301310018|ref|ZP_07215957.1| GntS [Bacteroides sp. 20_3] gi|298266593|gb|EFI08251.1| hypothetical protein HMPREF0104_02900 [Bacteroides sp. 3_1_19] gi|300831592|gb|EFK62223.1| GntS [Bacteroides sp. 20_3] Length = 181 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 79/213 (37%), Positives = 109/213 (51%), Gaps = 36/213 (16%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT + Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------RCSFCDTRH------EE 43 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 G D+ +++E+ R +LTGGEP L +D LI L + G +I +ETNGT Sbjct: 44 GVMMTDE--EIVEK---VSSFPARMVILTGGEPSLWIDKALISRLREAGKQICIETNGTR 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDW+ SPK + ++ E+K+V Y G D ++ P FL+ Sbjct: 99 PLPDGIDWVTCSPKENAPVVLERVDEIKVV----------YTGQDLSAYAEIPARYHFLQ 148 Query: 183 ----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT + Y ++P+WRLS+QTHK I I+ Sbjct: 149 PCSCQNTKEVVDYILRHPRWRLSLQTHKLIDIQ 181 >gi|237721523|ref|ZP_04552004.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229449319|gb|EEO55110.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 181 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 84/214 (39%), Positives = 109/214 (50%), Gaps = 38/214 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G A+F RFSGCNL +C FCDT Q +G Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDT-----QHEEG 44 Query: 63 GRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 D++ A++ + +T VLTGGEP L +D LI L++ G + +ETNGT Sbjct: 45 KMMTDDEIIAEVKKYPAVT-------VVLTGGEPSLWIDDELIDRLHEAGKYVTIETNGT 97 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 P IDW+ SPK G L I E+K+V Y G D F L P + FL Sbjct: 98 RPLPAAIDWVTCSPKQGGKLAIDRMDEVKVV----------YEGQDISIFELLPAEHFFL 147 Query: 182 E----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + NT + ++PKWRLS+QTHK I IR Sbjct: 148 QPCSCNNTASTVDCVMRHPKWRLSLQTHKLIDIR 181 >gi|53714880|ref|YP_100872.1| hypothetical protein BF3595 [Bacteroides fragilis YCH46] gi|253565984|ref|ZP_04843438.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|52217745|dbj|BAD50338.1| conserved hypothetical protein [Bacteroides fragilis YCH46] gi|251945088|gb|EES85526.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 181 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 80/208 (38%), Positives = 106/208 (50%), Gaps = 28/208 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT + Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCDFCDTRH------EE 43 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 G D+ D++ E G+ +LTGGEP L +D I L++ G + +ETNGT Sbjct: 44 GEMMTDE--DIVNE---IGKYPAVMVILTGGEPSLWIDDAFIDLLHRAGKYVCIETNGTK 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G +L + E+K+V+ N+ + Y E F LQP Sbjct: 99 PLPAAIDWVTCSPKQGVNLALNRMDEVKVVYEGQNI--DVYEQLPAEHFFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT + ++PKWRLS+QTHK I I Sbjct: 153 NNTAETVDCVMRHPKWRLSLQTHKLINI 180 >gi|237708545|ref|ZP_04539026.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|265751292|ref|ZP_06087355.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|229457474|gb|EEO63195.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263238188|gb|EEZ23638.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 181 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 77/205 (37%), Positives = 107/205 (52%), Gaps = 28/205 (13%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGEG H G AVF RFSGCNL +C FCDT Q +G Sbjct: 4 INEIFYSLQGEGYHTGIPAVFVRFSGCNL-----------RCPFCDT-----QHEEGTLM 47 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 + + +A + + + +LTGGEP L +D L+ AL+ + +ETNGT P Sbjct: 48 SDEDIAMEV------AKYSTQVVILTGGEPGLWIDEKLVDALHHERKYVCIETNGTCRLP 101 Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185 + IDW+ SPK G + + E+K+V+ +VS Y+ + LQP NT Sbjct: 102 ENIDWVTCSPKEGAKINLDRIDEVKVVYVGQDVSA--YLDLSASHYFLQPCSCA----NT 155 Query: 186 NLAISYCFQNPKWRLSVQTHKFIGI 210 I+Y Q+P+WRLS+QTHK + I Sbjct: 156 EEVIAYILQHPEWRLSLQTHKLLQI 180 >gi|255013373|ref|ZP_05285499.1| hypothetical protein B2_05655 [Bacteroides sp. 2_1_7] gi|262381499|ref|ZP_06074637.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296676|gb|EEY84606.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 181 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 79/213 (37%), Positives = 109/213 (51%), Gaps = 36/213 (16%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT + Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------RCSFCDTRH------EE 43 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 G D+ +++E+ R +LTGGEP L +D LI L + G +I +ETNGT Sbjct: 44 GVMMTDE--EIVEK---VSSFPARIVILTGGEPSLWIDKALISRLREAGKQICIETNGTR 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDW+ SPK + ++ E+K+V Y G D ++ P FL+ Sbjct: 99 PLPDGIDWVTCSPKENAPVVLERIDEIKVV----------YTGQDLSAYAEIPARYHFLQ 148 Query: 183 ----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT + Y ++P+WRLS+QTHK I I+ Sbjct: 149 PCSCQNTKEVVDYILRHPRWRLSLQTHKLIDIQ 181 >gi|60682861|ref|YP_213005.1| hypothetical protein BF3399 [Bacteroides fragilis NCTC 9343] gi|60494295|emb|CAH09090.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] gi|301164330|emb|CBW23888.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 181 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 80/208 (38%), Positives = 106/208 (50%), Gaps = 28/208 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT + Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCDFCDTRH------EE 43 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 G D+ D++ E G+ +LTGGEP L +D I L++ G + +ETNGT Sbjct: 44 GEMMTDE--DIVNE---IGKYPAVMVILTGGEPSLWIDDAFIDLLHRAGKYVCIETNGTK 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G +L + E+K+V+ N+ + Y E F LQP Sbjct: 99 PLPVAIDWVTCSPKQGVNLALNRMDEVKVVYEGQNI--DVYEQLPAEHFFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT + ++PKWRLS+QTHK I I Sbjct: 153 NNTAETVDCVMRHPKWRLSLQTHKLINI 180 >gi|265766736|ref|ZP_06094565.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263253113|gb|EEZ24589.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 181 Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 80/208 (38%), Positives = 105/208 (50%), Gaps = 28/208 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT + Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCDFCDTRH------EE 43 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 G D+ D++ E G+ +LTGGEP L +D I L+ G + +ETNGT Sbjct: 44 GEMMTDE--DIVNE---IGKYPAVMVILTGGEPSLWIDDAFIDLLHHAGKYVCIETNGTK 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G +L + E+K+V+ N+ + Y E F LQP Sbjct: 99 PLPAAIDWVTCSPKQGVNLALNRMDEVKVVYEGQNI--DVYEQLPAEHFFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT + ++PKWRLS+QTHK I I Sbjct: 153 NNTAETVDCVMRHPKWRLSLQTHKLINI 180 >gi|256840895|ref|ZP_05546403.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256738167|gb|EEU51493.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 181 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 79/213 (37%), Positives = 109/213 (51%), Gaps = 36/213 (16%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT + Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------RCGFCDTRH------EE 43 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 G D+ +++E+ R +LTGGEP L +D LI L + G +I +ETNGT Sbjct: 44 GVMMTDE--EIVEK---VSSFPARMVILTGGEPSLWIDKALISRLREAGKQICIETNGTR 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDW+ SPK + ++ E+K+V Y G D ++ P FL+ Sbjct: 99 PLPDGIDWVTCSPKENAPVVLERVDEIKVV----------YTGQDLSAYAEIPARYHFLQ 148 Query: 183 ----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT + Y ++P+WRLS+QTHK I I+ Sbjct: 149 PCSCQNTKEVVDYILRHPRWRLSLQTHKLIDIQ 181 >gi|150007939|ref|YP_001302682.1| hypothetical protein BDI_1300 [Parabacteroides distasonis ATCC 8503] gi|149936363|gb|ABR43060.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] Length = 181 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/213 (36%), Positives = 109/213 (51%), Gaps = 36/213 (16%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT + Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------RCGFCDTRH------EE 43 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 G D+ +++E+ R +LTGGEP L +D LI L + G ++ +ETNGT Sbjct: 44 GVMMTDE--EIVEK---VSSFPARMVILTGGEPSLWIDKSLISRLREAGKQVCIETNGTR 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDW+ SPK + ++ E+K+V Y G D ++ P FL+ Sbjct: 99 PLPDGIDWVTCSPKENAPVVLERVDEIKVV----------YTGQDLSAYAEIPARYHFLQ 148 Query: 183 ----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT + Y ++P+WRLS+QTHK I I+ Sbjct: 149 PCSCQNTKEVVDYILRHPRWRLSLQTHKLIDIQ 181 >gi|218129819|ref|ZP_03458623.1| hypothetical protein BACEGG_01399 [Bacteroides eggerthii DSM 20697] gi|317475833|ref|ZP_07935090.1| radical SAM superfamily protein [Bacteroides eggerthii 1_2_48FAA] gi|217987929|gb|EEC54254.1| hypothetical protein BACEGG_01399 [Bacteroides eggerthii DSM 20697] gi|316907993|gb|EFV29690.1| radical SAM superfamily protein [Bacteroides eggerthii 1_2_48FAA] Length = 181 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/213 (37%), Positives = 105/213 (49%), Gaps = 36/213 (16%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT Q +G Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFIRFSGCNL-----------KCSFCDT-----QHEEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + +++ D + GE +LTGGEP L +D + L++ G + +ETNGT Sbjct: 45 VLMSDEEILDAV------GEYPATTVILTGGEPSLWIDREFVDRLHRIGKYVCIETNGTR 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G I E+K+V Y G D + L P FL+ Sbjct: 99 ALPDNIDWVTCSPKQGAKPVISRMDEVKVV----------YEGQDITVYELLPAGHFFLQ 148 Query: 183 ----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 N ++ Q+PKWRLS+QTHK I IR Sbjct: 149 PCSCSNVAETVACVMQHPKWRLSLQTHKLIDIR 181 >gi|189467678|ref|ZP_03016463.1| hypothetical protein BACINT_04069 [Bacteroides intestinalis DSM 17393] gi|189435942|gb|EDV04927.1| hypothetical protein BACINT_04069 [Bacteroides intestinalis DSM 17393] Length = 181 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/213 (38%), Positives = 107/213 (50%), Gaps = 36/213 (16%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT + +G Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCSFCDT-----RHEEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + D++ + G+ +LTGGEP L VD I L++ G + +ETNGT Sbjct: 45 VLMSDDEIIAEV------GKYPAVTVILTGGEPSLWVDEAFIDRLHQAGKYVCIETNGTN 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G L I E+K+V Y G D + L P + FL+ Sbjct: 99 PLPPNIDWVTCSPKQGVKLGITRMDEVKVV----------YEGQDIGVYELLPAEYFFLQ 148 Query: 183 ----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT ++ Q+PKWRLS+QTHK I IR Sbjct: 149 PCSCSNTAETVACVMQHPKWRLSLQTHKLIDIR 181 >gi|298376475|ref|ZP_06986430.1| hypothetical protein HMPREF0104_02657 [Bacteroides sp. 3_1_19] gi|298266353|gb|EFI08011.1| hypothetical protein HMPREF0104_02657 [Bacteroides sp. 3_1_19] Length = 181 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/209 (36%), Positives = 106/209 (50%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF ++QGEG G AVF RFSGCNL +C FCDT+ +G Sbjct: 1 MKKINEIFYSIQGEGYFTGTPAVFVRFSGCNL-----------RCPFCDTEH-----KEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + D++ I + VLTGGEP +QV L+ + G + +ETNGT+ Sbjct: 45 KMLSDDEIIAEIRRY------PALHVVLTGGEPCMQVTYDLVDKIKATGRFVQIETNGTL 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 PP IDWI SPK G + ELK+V+ ++S Y + + LQP G Sbjct: 99 VPPVNIDWITCSPKEGGKTVVINPNELKVVYTGQDMS--QYDKYSAGVYYLQPCSG---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT I+Y + PKW+LS+QTHK + +R Sbjct: 153 RNTKEVINYIKEYPKWKLSLQTHKILNVR 181 >gi|260174975|ref|ZP_05761387.1| hypothetical protein BacD2_24170 [Bacteroides sp. D2] gi|315923210|ref|ZP_07919450.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313697085|gb|EFS33920.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 181 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 79/209 (37%), Positives = 110/209 (52%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF ++QGEG G AVF RFSGCNL +C FCDT Sbjct: 1 MKKINEIFYSIQGEGYRTGTPAVFVRFSGCNL-----------KCPFCDTQH------SS 43 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 GR D+ ++I+E R+ VLTGGEP LQVD I L++ G + +ETNGT+ Sbjct: 44 GREMSDE--EIIKEVCFY---PTRFVVLTGGEPGLQVDQEFINKLHQAGKFVQIETNGTV 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDWI SPK G + + E+K+V+ ++S Y + LQP Sbjct: 99 PLPIGIDWITCSPKEGSKVFVVNPHEIKVVYTGQDLS--TYEAMTAAVYYLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT I+Y ++PKW+LS+QT K + ++ Sbjct: 153 QNTEEVINYVKEHPKWKLSLQTQKILNVQ 181 >gi|167763255|ref|ZP_02435382.1| hypothetical protein BACSTE_01627 [Bacteroides stercoris ATCC 43183] gi|167698549|gb|EDS15128.1| hypothetical protein BACSTE_01627 [Bacteroides stercoris ATCC 43183] Length = 181 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/209 (37%), Positives = 107/209 (51%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT + Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------KCSFCDTQH------EE 43 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 G + D+ +++ E G+ +LTGGEP L +D + L++ G + +ETNGT Sbjct: 44 GVWMSDE--EILAE---VGKYPAMTVILTGGEPSLWIDREFVDCLHRMGKYVCIETNGTH 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G L I E+K+V+ +++ Y F LQP Sbjct: 99 SLPDNIDWVTCSPKQGAKLCISRMDEVKVVYEGQDIAV--YESLPAGHFFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT ++ Q+PKWRLS+QTHK I I+ Sbjct: 153 SNTAETVACVMQHPKWRLSLQTHKLIEIK 181 >gi|319901441|ref|YP_004161169.1| Radical SAM domain protein [Bacteroides helcogenes P 36-108] gi|319416472|gb|ADV43583.1| Radical SAM domain protein [Bacteroides helcogenes P 36-108] Length = 181 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 79/209 (37%), Positives = 108/209 (51%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT + Sbjct: 1 MRKINEIFYSLQGEGYHTGIPAVFIRFSGCNL-----------KCSFCDTHH------EE 43 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 GR D +++EE + +LTGGEP L +D + L++ G + +ETNGT Sbjct: 44 GRLMSDD--EIMEE---VRKYPAATVILTGGEPSLWIDSEFVDRLHRAGKYVCIETNGTH 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G +L+I G E+K+V+ +++ Y F LQP + Sbjct: 99 PLPDNIDWVTCSPKLGGNLRITGMDEVKVVYEGQDITV--YEQLPAGHFFLQPCSCNNIG 156 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 E + + +PKWRLS+QTHK I IR Sbjct: 157 ETVDCVM----HHPKWRLSLQTHKLIDIR 181 >gi|329955365|ref|ZP_08296273.1| radical SAM domain protein [Bacteroides clarus YIT 12056] gi|328525768|gb|EGF52792.1| radical SAM domain protein [Bacteroides clarus YIT 12056] Length = 181 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 105/208 (50%), Gaps = 28/208 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF R SGCNL +C FCDT + Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFIRLSGCNL-----------KCPFCDTQH------EE 43 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 G D+ +++ E G+ +LTGGEP L +D + L++ G + +ETNGT Sbjct: 44 GVLMTDE--EIMAE---VGKYPAMMVILTGGEPSLWIDREFVDRLHQLGKYVCIETNGTH 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 E P IDW+ SPK G L I E+K+V+ +++ Y + F LQP Sbjct: 99 ELPDNIDWVTCSPKRGAKLSISRMDEVKVVYESQDITV--YEQLPAKHFFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT + Q+PKWRLS+QTHK I I Sbjct: 153 SNTVETVVRVMQHPKWRLSLQTHKLINI 180 >gi|270293623|ref|ZP_06199825.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275090|gb|EFA20950.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 181 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/209 (37%), Positives = 105/209 (50%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT + Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCPFCDTQH------ED 43 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 G D+ D++ E + +LTGGEP L +D + L++ G + +ETNGT Sbjct: 44 GILMSDE--DIVTE---VSKYPAATVILTGGEPSLWIDREFVDCLHQAGKYVCIETNGTR 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G L+I E+K+V+ +++ Y F LQP Sbjct: 99 PLPDNIDWVTCSPKQGVKLEITRMNEVKVVYEGQDIT--VYEQLPAGHFFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT + ++PKWRLS+QTHK I IR Sbjct: 153 SNTAETVDCVMKHPKWRLSLQTHKLIDIR 181 >gi|160888847|ref|ZP_02069850.1| hypothetical protein BACUNI_01266 [Bacteroides uniformis ATCC 8492] gi|156861746|gb|EDO55177.1| hypothetical protein BACUNI_01266 [Bacteroides uniformis ATCC 8492] Length = 181 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/209 (37%), Positives = 104/209 (49%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT + Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCPFCDTQH------ED 43 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 G D+ D++ E +LTGGEP L +D + L++ G + +ETNGT Sbjct: 44 GILMSDE--DIVTE---VSRYPAATVILTGGEPSLWIDREFVDCLHQAGKYVCIETNGTH 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G L+I E+K+V+ +++ Y F LQP Sbjct: 99 PLPDNIDWVTCSPKQGVKLEITRMNEVKVVYEGQDIT--VYEQLPAGHFFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT + ++PKWRLS+QTHK I IR Sbjct: 153 SNTAETVDCVMKHPKWRLSLQTHKLIDIR 181 >gi|317479410|ref|ZP_07938544.1| radical SAM superfamily protein [Bacteroides sp. 4_1_36] gi|316904484|gb|EFV26304.1| radical SAM superfamily protein [Bacteroides sp. 4_1_36] Length = 181 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/209 (37%), Positives = 104/209 (49%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT + Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCLFCDTQH------ED 43 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 G D+ D++ E +LTGGEP L +D + L++ G + +ETNGT Sbjct: 44 GILMSDE--DIVTE---VSRYPAATVILTGGEPSLWIDREFVDCLHQAGKYVCIETNGTR 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G L+I E+K+V+ +++ Y F LQP Sbjct: 99 PLPDNIDWVTCSPKQGVKLEITRMNEVKVVYEGQDITV--YEQLPAGHFFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT + ++PKWRLS+QTHK I IR Sbjct: 153 SNTAETVDCVMKHPKWRLSLQTHKLIDIR 181 >gi|262195340|ref|YP_003266549.1| radical SAM protein [Haliangium ochraceum DSM 14365] gi|262078687|gb|ACY14656.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365] Length = 211 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 114/228 (50%), Gaps = 47/228 (20%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 Y +KEIF TLQGEG HAGR VF RF+GCNL QC +CDTDF +G + Sbjct: 9 YRVKEIFGPTLQGEGTHAGRACVFLRFAGCNL-----------QCSWCDTDF-SPEGAER 56 Query: 63 GRYNVDQLADLIEEQWITGEKEG-RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 R AD I E+ + + G R ++TGGEP LQ D L AL GF + +E+NGT Sbjct: 57 LR------ADEITERLLALDVHGARTVIVTGGEPALQWDQELADALRAAGFRVHMESNGT 110 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS------------------PENY 163 P +DW+ VSPK ++ G +E + VS +Y Sbjct: 111 RPPRAPVDWLTVSPK----VQFHGPREALFASAEAAVSECKLVVDDSVSHDTLAALEHHY 166 Query: 164 IGFDFERFSLQP-MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 G D LQP MD + E++ ++ + P+WRLS+Q HK +G+ Sbjct: 167 EGAD---LLLQPCMDADY-EQHLARTLTLIGERPRWRLSLQLHKIVGV 210 >gi|255011037|ref|ZP_05283163.1| hypothetical protein Bfra3_17992 [Bacteroides fragilis 3_1_12] gi|313148842|ref|ZP_07811035.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137609|gb|EFR54969.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 181 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/210 (36%), Positives = 105/210 (50%), Gaps = 32/210 (15%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCDFCDT---------- 39 Query: 63 GRYNVDQLADLIEEQWITGEKE--GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 R+ ++ + +E+ + K+ +LTGGEP L +D I L+ G + +ETNG Sbjct: 40 -RHETGEM--MTDEEIVNEVKKYPAVMVILTGGEPSLWIDDAFIDLLHGAGKYVCIETNG 96 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T P IDW+ SPK G L + E+K+V+ N+ + Y E F LQP Sbjct: 97 TKPLPAAIDWVTCSPKQGVKLALNRMDEVKVVYEGQNI--DVYEQLPAEHFFLQPCSC-- 152 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT + ++P+WRLS+QTHK I I Sbjct: 153 --NNTAETVDCVMRHPRWRLSLQTHKLINI 180 >gi|329961992|ref|ZP_08300003.1| radical SAM domain protein [Bacteroides fluxus YIT 12057] gi|328530640|gb|EGF57498.1| radical SAM domain protein [Bacteroides fluxus YIT 12057] Length = 181 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/209 (36%), Positives = 107/209 (51%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT Q +G Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFIRFSGCNL-----------KCSFCDT-----QHEEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + D++ + + G+ +LTGGEP L +D + L++ G + +ETNGT Sbjct: 45 CLMSDDEIMEEV------GKYPAATVILTGGEPSLWIDGEFVDRLHRAGKYVCIETNGTR 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G L I E+K+V+ +++ Y F LQP + Sbjct: 99 LLPGNIDWVTCSPKQGTRLGIARMDEVKVVYEGQDIT--GYEQLPAAHFFLQPCSCNNIG 156 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 E + + ++PKWRLS+QTHK I IR Sbjct: 157 ETVDCVM----RHPKWRLSLQTHKLIDIR 181 >gi|282859352|ref|ZP_06268460.1| radical SAM domain protein [Prevotella bivia JCVIHMP010] gi|282587837|gb|EFB93034.1| radical SAM domain protein [Prevotella bivia JCVIHMP010] Length = 194 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/213 (37%), Positives = 106/213 (49%), Gaps = 28/213 (13%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF ++QGEG +AG A+F RF+ CNL C FCDTDFV R+ Sbjct: 3 INEIFYSIQGEGFYAGTPAIFVRFAQCNL-----------NCAFCDTDFV--------RF 43 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 +++ E G + +LTGGEP LQV L L++ G I +ETNGT Sbjct: 44 TEMTEEEIVAEVCRIGNP-ATHVILTGGEPSLQVTASLCDKLHEAGKVIHIETNGTHAVA 102 Query: 126 QGIDWICVSPK----AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 +GID+I SPK +L ++ ELK+VF N Y + + LQP D Sbjct: 103 EGIDFITCSPKLEYCKHAELCVQRIDELKVVFTGKN-DMALYENIQAQHYFLQPCDVGND 161 Query: 182 EENTNL---AISYCFQNPKWRLSVQTHKFIGIR 211 EN + + YC NPKW +SVQ HK + IR Sbjct: 162 AENGRIIAATVGYCKANPKWNISVQIHKVLAIR 194 >gi|218259962|ref|ZP_03475458.1| hypothetical protein PRABACTJOHN_01119 [Parabacteroides johnsonii DSM 18315] gi|218224823|gb|EEC97473.1| hypothetical protein PRABACTJOHN_01119 [Parabacteroides johnsonii DSM 18315] Length = 180 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 78/205 (38%), Positives = 104/205 (50%), Gaps = 29/205 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGEG H G AVF RFSGCNL +C FCDT + G Sbjct: 4 INEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------KCSFCDTRH------EEGIL 46 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 D+ D+++ +LTGGEP L +D I L+ G I +ETNGT P Sbjct: 47 MSDE--DILQA---ISAFPSNVVILTGGEPSLWIDQTFIDLLHMAGKYICIETNGTNPLP 101 Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185 +GIDW+ SPK G L++ E+K+V+ +++ Y G + LQP NT Sbjct: 102 EGIDWVTCSPK-GFPLRLAHIDEVKVVYTGQDLT--EYAGLEATWHFLQPCSC----LNT 154 Query: 186 NLAISYCFQNPKWRLSVQTHKFIGI 210 + Y +P+WRLS+QTHK I I Sbjct: 155 KEVVEYILHHPQWRLSLQTHKLIDI 179 >gi|198274527|ref|ZP_03207059.1| hypothetical protein BACPLE_00675 [Bacteroides plebeius DSM 17135] gi|198272581|gb|EDY96850.1| hypothetical protein BACPLE_00675 [Bacteroides plebeius DSM 17135] Length = 181 Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 106/209 (50%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + EIF ++QGEG H G AVF RFSGCNL +C FCDT + Sbjct: 1 MKKVNEIFYSIQGEGYHTGTPAVFVRFSGCNL-----------KCPFCDTQH------ED 43 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 G D+ +++ E G+ +LTGGEP L +D + L++ G + +ETNGT Sbjct: 44 GILMSDE--EILSE---VGKYPAVMVILTGGEPSLWIDREFVDRLHRIGKYVCIETNGTR 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G + + E+K+V+ ++S Y + LQP Sbjct: 99 SLPNNIDWVTCSPKEGSNAIVVNPHEIKVVYTGQDLS--TYEEMTAAVYYLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT I Y ++PKW+LS+QT K + +R Sbjct: 153 QNTEEVIDYIKKHPKWKLSLQTQKILNVR 181 >gi|319642227|ref|ZP_07996886.1| hypothetical protein HMPREF9011_02486 [Bacteroides sp. 3_1_40A] gi|317386083|gb|EFV67003.1| hypothetical protein HMPREF9011_02486 [Bacteroides sp. 3_1_40A] Length = 181 Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 106/209 (50%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + EIF ++QGEG H G AVF RFSGCNL +C FCDT + Sbjct: 1 MKKVNEIFYSIQGEGYHTGTPAVFVRFSGCNL-----------KCPFCDTQH------ED 43 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 G D+ +++ E G+ +LTGGEP L +D + L++ G + +ETNGT Sbjct: 44 GILMSDE--EILSE---VGKYPAVMVILTGGEPSLWIDREFVDRLHRIGKYVCIETNGTR 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G + + E+K+V+ ++S Y + LQP Sbjct: 99 SLPNNIDWVTCSPKEGSNAIVVNPHEIKVVYTGQDLS--TYEEMTAAVYYLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT I Y ++PKW+LS+QT K + +R Sbjct: 153 QNTEEVIGYIKKHPKWKLSLQTQKILNVR 181 >gi|154490137|ref|ZP_02030398.1| hypothetical protein PARMER_00367 [Parabacteroides merdae ATCC 43184] gi|154089029|gb|EDN88073.1| hypothetical protein PARMER_00367 [Parabacteroides merdae ATCC 43184] Length = 180 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/205 (37%), Positives = 102/205 (49%), Gaps = 29/205 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGEG H G AVF RFSGCNL +C FCDT + G Sbjct: 4 INEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------KCSFCDTRH------EEGIL 46 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 D+ D+++ +LTGGEP L +D I L+ G I +ETNGT P Sbjct: 47 MSDE--DILQA---ISAFPSNVVILTGGEPSLWIDQTFIDLLHMAGKYICIETNGTNPLP 101 Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185 +GIDW+ SPK G L++ E+K+V+ +++ Y G LQP NT Sbjct: 102 EGIDWVTCSPK-GFPLRLTHIDEIKVVYTGQDLT--EYAGLKATWHFLQPCSC----LNT 154 Query: 186 NLAISYCFQNPKWRLSVQTHKFIGI 210 + Y +P+W LS+QTHK I I Sbjct: 155 KEVVEYILHHPQWHLSLQTHKLIDI 179 >gi|34557972|ref|NP_907787.1| organic radical activating enzyme [Wolinella succinogenes DSM 1740] gi|34483690|emb|CAE10687.1| conserved hypothetical protein-Organic radical activating enzymes [Wolinella succinogenes] Length = 193 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/211 (36%), Positives = 102/211 (48%), Gaps = 22/211 (10%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y + EIF ++QGEG H+G+ A+F R GCNL C FCD T+G Sbjct: 1 MYPVTEIFYSIQGEGHHSGKAALFVRLHGCNL-----------ACDFCDEP----SHTQG 45 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG-T 121 N Q A I EQ + V+TGGEP L PLI+ L K G+ +A+ETNG Sbjct: 46 EYENQSQEA--ILEQ--LRAYPAHFVVITGGEPTLFDLNPLIKFLQKEGYFVAIETNGYN 101 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM-DGPF 180 + Q DWI SPK L +G ELK + + F + LQP DG Sbjct: 102 LAHIQAADWITYSPKNWNTLAKEGYDELKFIIHHASDITPLLALFQEKPLYLQPQSDGSA 161 Query: 181 LE-ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 L N + ++P+WRLS+QTHK + I Sbjct: 162 LNAANVARCVELILEHPEWRLSLQTHKILEI 192 >gi|167754369|ref|ZP_02426496.1| hypothetical protein ALIPUT_02663 [Alistipes putredinis DSM 17216] gi|167658994|gb|EDS03124.1| hypothetical protein ALIPUT_02663 [Alistipes putredinis DSM 17216] Length = 194 Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 112/219 (51%), Gaps = 40/219 (18%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF ++QGEG + G A+F R +GCNL +C FCDT+ Q Sbjct: 3 VNEIFYSIQGEGRYTGTPAIFIRLAGCNL-----------RCDFCDTEHQPYQ------- 44 Query: 66 NVDQLADLIEEQWI--TGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGFEIAVETNGTI 122 DL EE+ + + + V+TGGEP+LQ+ LI L N G + VETNGTI Sbjct: 45 ------DLTEEEIMRQIADFPTSHVVITGGEPMLQITQSLIHRLRNGAGKFVQVETNGTI 98 Query: 123 EPPQ---GIDWICVSPK----AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175 P + +DWI SPK +L+++ ELK+V+ +++ Y G + + + LQP Sbjct: 99 -PIKCYLPVDWITCSPKFDFCPHAELRLQRIDELKVVYQGQDMTA--YDGIEAKEYYLQP 155 Query: 176 ---MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 D EN I+Y +PKW+LS+QT K + +R Sbjct: 156 CDFKDEARNAENLAATINYIKSHPKWKLSLQTQKILSVR 194 >gi|317505338|ref|ZP_07963266.1| GntS protein [Prevotella salivae DSM 15606] gi|315663552|gb|EFV03291.1| GntS protein [Prevotella salivae DSM 15606] Length = 141 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/136 (44%), Positives = 82/136 (60%), Gaps = 7/136 (5%) Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAG 138 I+ K+ + VLTGGEP LQVD LI AL+ GF +A+E+NGT PPQ +DW+ VSPK Sbjct: 10 ISKWKKAGFVVLTGGEPTLQVDDKLIDALHASGFYVAMESNGTRVPPQNLDWLTVSPKGS 69 Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL---AISYCFQN 195 + + ELK +F ++ + I D+ + LQP D +N + ISY + Sbjct: 70 --VVVTKCNELKCIFDGESMVDDAGIQADY--YYLQPCDVGDKAKNQVILQACISYILSH 125 Query: 196 PKWRLSVQTHKFIGIR 211 PKWRLS+QTHK IGI+ Sbjct: 126 PKWRLSLQTHKMIGIQ 141 >gi|34540794|ref|NP_905273.1| hypothetical protein PG1057 [Porphyromonas gingivalis W83] gi|34397108|gb|AAQ66172.1| conserved hypothetical protein [Porphyromonas gingivalis W83] Length = 197 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 106/222 (47%), Gaps = 45/222 (20%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +LQGEG + GR AVF R +GCNL C +CDTDF +G + Sbjct: 3 VNEIFHSLQGEGANTGRAAVFVRLAGCNL-----------ACPYCDTDFA-----QGKKM 46 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 +++++A IE R+ + TGGEP LQ+ ++ G+ A+ETNGT P Sbjct: 47 SLEEIARSIEHY------PTRFLIWTGGEPTLQLTEEATAYFHRLGYFQAIETNGTRPVP 100 Query: 126 QGIDWICVSPKAGCDLKIK-----GGQELKLVF-------PQVNVSPENYIGFDFERFSL 173 +GID+I SPK G K+K G E + P ++ P + + + Sbjct: 101 KGIDYISCSPKTGAIGKLKENFPDGVGEFRFPLGSDTPLPPPIDELPTA------QHYLV 154 Query: 174 QPM-DGPFLEENTNLAISYCFQ----NPKWRLSVQTHKFIGI 210 P+ G E AI+ C + P WRLS+Q HK I I Sbjct: 155 SPIFAGDDAMEPDPSAITRCVEFVKAFPAWRLSIQMHKLIHI 196 >gi|313886424|ref|ZP_07820143.1| radical SAM domain protein [Porphyromonas asaccharolytica PR426713P-I] gi|312924105|gb|EFR34895.1| radical SAM domain protein [Porphyromonas asaccharolytica PR426713P-I] Length = 201 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 106/229 (46%), Gaps = 46/229 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M+ + EIF +LQGEGG GR +F R SGCNL C +CDTDF G Q Sbjct: 1 MQPLPVNEIFYSLQGEGGQMGRAMLFVRLSGCNL-----------TCDYCDTDFAGHQLM 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + LA L G R + TGGEP L + I ++ G+ ++ETNG Sbjct: 50 TAS----EILAQL-------GSYPCRDILWTGGEPTLALREEHIAFFHEHGYRQSIETNG 98 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQE----------------LKLVFPQVNVSPENYI 164 T PQG+D++ SPK I G +E L+L P + P Sbjct: 99 TRPVPQGLDYVTCSPKPEA---ISGLRERFVDNYPDGIDEVRWPLQLGAP---LPPPIEQ 152 Query: 165 GFDFERFSLQPMDGPFLEENTNLA--ISYCFQNPKWRLSVQTHKFIGIR 211 + R+ + P++ +E + +A + + +P+WRLSVQ HK +G R Sbjct: 153 LVEARRYYVSPVEETGVEMSAVVARCMDFVLAHPEWRLSVQLHKLLGFR 201 >gi|332177919|gb|AEE13609.1| Radical SAM domain protein [Porphyromonas asaccharolytica DSM 20707] Length = 201 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 106/229 (46%), Gaps = 46/229 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M+ + EIF +LQGEGG GR +F R SGCNL C +CDTDF G Q Sbjct: 1 MQPLPVNEIFYSLQGEGGQMGRAMLFVRLSGCNL-----------TCDYCDTDFAGHQLM 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + LA L G R + TGGEP L + I ++ G+ ++ETNG Sbjct: 50 TAS----EILAQL-------GSYPCRDILWTGGEPTLALREEHIAFFHEHGYRQSIETNG 98 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQE----------------LKLVFPQVNVSPENYI 164 T PQG+D++ SPK I G +E L+L P + P Sbjct: 99 TRPMPQGLDYVTCSPKPEA---ISGLRERFVDNYPDGIDEVRWPLQLGAP---LPPPIEQ 152 Query: 165 GFDFERFSLQPMDGPFLEENTNLA--ISYCFQNPKWRLSVQTHKFIGIR 211 + R+ + P++ +E + +A + + +P+WRLSVQ HK +G R Sbjct: 153 LAEARRYYVSPVEETGVEMSAVVARCMDFVLAHPEWRLSVQLHKLLGFR 201 >gi|187251045|ref|YP_001875527.1| putative 6- pyruvoyltetrahydropterin 2-reductase [Elusimicrobium minutum Pei191] gi|186971205|gb|ACC98190.1| Putative 6- pyruvoyltetrahydropterin 2-reductase [Elusimicrobium minutum Pei191] Length = 195 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 73/213 (34%), Positives = 106/213 (49%), Gaps = 30/213 (14%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + EIF +LQGEG + G AVF R SGC + C FCDTDF Sbjct: 6 FKLTEIFYSLQGEGMYTGTAAVFVRLSGCLMG-----------CSFCDTDF--------K 46 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 V ++I+E + + ++TGGEP Q LI++L + G ++ +ETNG+I Sbjct: 47 ENFVMTSEEIIKE---VKKYPSKIVIITGGEPAEQDICALIKSLKQAGLKVHIETNGSIY 103 Query: 124 -PPQGIDWICVSPKAGCDLK-IKGGQELKLVFPQ-VNVSP-ENYIGFDFE--RFSLQPMD 177 QG+D + VSPK D +K +K+V Q ++S + Y + E LQP Sbjct: 104 FDAQGVDNLTVSPKTYVDPNMLKSAHVIKIVVGQDTDISDLKKYFNYASEGRLIYLQPES 163 Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +EN +L + +NP RLS+QTHKF I Sbjct: 164 NK--QENIDLCVKLIKENPFLRLSLQTHKFAKI 194 >gi|56750231|ref|YP_170932.1| hypothetical protein syc0222_c [Synechococcus elongatus PCC 6301] gi|81300141|ref|YP_400349.1| hypothetical protein Synpcc7942_1332 [Synechococcus elongatus PCC 7942] gi|56685190|dbj|BAD78412.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81169022|gb|ABB57362.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 206 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 102/218 (46%), Gaps = 37/218 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E F ++QGEG G A F R +GC++ C +CDT Q R+ Sbjct: 14 IVETFHSVQGEGAWMGCSAFFIRLAGCDV-----------GCPWCDTK----QSWPRDRH 58 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 +ADL+E + ++ V+TGGEPLL L AL +G +ET+G+ P Sbjct: 59 PEVAIADLVEA---AVAAQPQFVVITGGEPLLHDLTELTNALRSQGLRCHLETSGSASPS 115 Query: 126 QGIDWICVSP---KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF---ERFSLQPMDGP 179 DW+ +SP KA ELK+V + FDF E ++ Sbjct: 116 GSFDWVTLSPKPFKAVVAANYNWANELKVVI-------QTDADFDFAEQEAIAVPETTLK 168 Query: 180 FLE------ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 L+ E+ + ++Y Q+P+WR+S+QTHKF+G+R Sbjct: 169 LLQPEWNSPESCDRVVNYVRQHPRWRVSLQTHKFLGVR 206 >gi|228469718|ref|ZP_04054686.1| organic radical activating enzyme [Porphyromonas uenonis 60-3] gi|228308737|gb|EEK17463.1| organic radical activating enzyme [Porphyromonas uenonis 60-3] Length = 201 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 46/229 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M+ + EIF +LQGEGG GR +F R SGCNL C +CDTDF G Sbjct: 1 MQSLPVNEIFYSLQGEGGQMGRAMLFVRLSGCNL-----------ACDYCDTDFAG---- 45 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + + +A+++ + R + TGGEP L + I +++G+ ++ETNG Sbjct: 46 ----HRLMTVAEILAK---LESYPCRDILWTGGEPTLALREEHIAFFHEQGYRQSIETNG 98 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQE----------------LKLVFPQVNVSPENYI 164 T P+G+D++ SPKA I G +E L+L P + P Sbjct: 99 TRPVPRGLDYVTCSPKAEA---ISGLRERFVDNYPDGIDEVRWPLQLGAP---LPPPIEQ 152 Query: 165 GFDFERFSLQPMDGPFLEENTNLA--ISYCFQNPKWRLSVQTHKFIGIR 211 R+ + P++ +E + +A + + +P+WRLSVQ HK +G R Sbjct: 153 LVQARRYYVSPVEETGVEMSAVVARCMDFVLAHPEWRLSVQLHKLLGFR 201 >gi|188995161|ref|YP_001929413.1| hypothetical protein PGN_1297 [Porphyromonas gingivalis ATCC 33277] gi|188594841|dbj|BAG33816.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC 33277] Length = 197 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 104/222 (46%), Gaps = 45/222 (20%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGEG + GR AVF R +GCNL C +CDTDF +G + Sbjct: 3 INEIFHSLQGEGANTGRAAVFVRLAGCNL-----------ACPYCDTDFA-----QGKKM 46 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 +++++A IE R+ + TGGEP LQ+ ++ G+ A+ETNGT P Sbjct: 47 SLEEIARSIEHY------PTRFLIWTGGEPTLQLTEEATAYFHRLGYYQAIETNGTRLVP 100 Query: 126 QGIDWICVSPKAGCDLKIK-----GGQELKLVF-------PQVNVSPENYIGFDFERFSL 173 +GID+I SPK K+K G E + P ++ P + + + Sbjct: 101 KGIDYISCSPKPEAIGKLKENFPDGVGEFRFPLGSDTPLPPPIDELPTA------QHYLV 154 Query: 174 QPM-DGPFLEENTNLAISYCFQ----NPKWRLSVQTHKFIGI 210 P+ G E AI+ C + P W LS+Q HK I I Sbjct: 155 SPIFAGDDAMEPDPSAITRCVEFVKAFPAWCLSIQMHKLIHI 196 >gi|256425881|ref|YP_003126534.1| hypothetical protein Cpin_6932 [Chitinophaga pinensis DSM 2588] gi|256040789|gb|ACU64333.1| conserved hypothetical protein [Chitinophaga pinensis DSM 2588] Length = 209 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/212 (32%), Positives = 102/212 (48%), Gaps = 26/212 (12%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F TLQGEG + G+ A F R GC++ C +CD + R+ Sbjct: 16 VMERFYTLQGEGNYQGQAAYFIRLGGCDV-----------GCHWCDVK----ESWDASRH 60 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 + +++L+ + GR V+TGGEPL+ PL AL+ F +ET+G+ Sbjct: 61 PLIAISELVRD---AAVHPGRIAVITGGEPLMHNLDPLTDALHAASFRTHMETSGSSPLS 117 Query: 126 QGIDWICVSP---KAGCDLKIKGGQELKLV-FPQVNVS-PENYIGF--DFERFSLQPMDG 178 DWI +SP KA + ELK+V F + + + E Y + LQP + Sbjct: 118 GHWDWITLSPKKFKAPLPEVCEVAHELKVVIFNKSDFAWAEKYAALAGPHCKLYLQP-EW 176 Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + T L I Y +NPKW+LS+QTHK+I + Sbjct: 177 EKSAQVTPLIIDYIKENPKWQLSLQTHKYINV 208 >gi|116071889|ref|ZP_01469157.1| possible organic radical activating enzyme [Synechococcus sp. BL107] gi|116065512|gb|EAU71270.1| possible organic radical activating enzyme [Synechococcus sp. BL107] Length = 205 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 106/221 (47%), Gaps = 39/221 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F +LQGEG H GR A F R +GCN+ C +CDT + + Sbjct: 9 VVETFHSLQGEGHHCGRSAFFIRLAGCNV-----------GCAWCDTKHSWPMASH-AKQ 56 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTIEP 124 +VD LA + G + V+TGGEPL PL AL++ G I +ET+G + Sbjct: 57 DVDGLARQARQAKDAG---AAFVVITGGEPLHHNLQPLTDALDRICGLPIHLETSGVDQL 113 Query: 125 PQGIDWICVSPK----------AGCDLKIKGGQELKLVFPQV-NVSPENYIGFDFERFS- 172 DW+ +SPK + CD ELK+V +VS + + D + Sbjct: 114 SGRFDWVTLSPKRHRPPQQALLSRCD-------ELKVVVLDTDDVSFAHAMANDTSTATH 166 Query: 173 --LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +QP+ E +LAI + Q+P+WRLS+Q+HKF+ IR Sbjct: 167 LLVQPVWDS--ETAQDLAIHHVQQHPRWRLSLQSHKFLQIR 205 >gi|313203030|ref|YP_004041687.1| radical sam domain protein [Paludibacter propionicigenes WB4] gi|312442346|gb|ADQ78702.1| Radical SAM domain protein [Paludibacter propionicigenes WB4] Length = 209 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 108/227 (47%), Gaps = 46/227 (20%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 L ++ EIF ++QGEG +AGR AVF R S CN C +CDTD+ +KG Sbjct: 9 LLNVVEIFHSIQGEGANAGRSAVFVRLSNCN-----------KNCWYCDTDW-----SKG 52 Query: 63 GRYNVDQLADLIEEQWITGEKE--GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 +V Q+ L E G+K+ + TGGEP LQ+ ++ ++ + +ETNG Sbjct: 53 ETMSVSQI--LAEVNKFVGKKDYPNNLIIWTGGEPTLQLTDEILSHFSE--YYNCIETNG 108 Query: 121 TIEPPQGIDWICVSPKAGCDL---KIKGGQELKL------VFPQVNVSP--ENYI----- 164 T P I +I SPK ++ K E + V P + P +NYI Sbjct: 109 TNPVPSLIKYISCSPKVKPEVLRKNFKHVNEFRYPIGDGDVLPDIAELPAADNYIVSPIF 168 Query: 165 -GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 G +RF ++EN AI + +NP+WRLS+Q HK + I Sbjct: 169 LGEAKKRFEQ-------VDENVKYAIDFVKKNPRWRLSLQLHKLLNI 208 >gi|240949106|ref|ZP_04753454.1| hypothetical protein AM305_01574 [Actinobacillus minor NM305] gi|240296501|gb|EER47133.1| hypothetical protein AM305_01574 [Actinobacillus minor NM305] Length = 206 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 113/226 (50%), Gaps = 47/226 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G ++F RF CNL C +CDT + + Sbjct: 8 YPIVEIFESLQGEGFNTGMPSIFIRFGKCNL-----------TCSWCDTPY-----HQFD 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + Q+ + +E + + ++TGGEP +Q ++ L+ L +RG+ +A+ETNG Sbjct: 52 SWTLTQILEKVEGY------QAKNIIITGGEPTIQPNLTVLLDELKQRGYFLAIETNGLK 105 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--------DFE 169 + P ID+I SPK K I E+++ V+ EN I F + E Sbjct: 106 DIPTQIDYIATSPKRLYAKKYQRRCIPFAHEVRI------VADENVIAFCEQIETQINAE 159 Query: 170 RFSLQP--MDGP--FLEENTNLAISYCFQN-PKWRLSVQTHKFIGI 210 R+ L P ++G LE T + + +N PKW+LS+QTHK +GI Sbjct: 160 RYYLSPCEVEGKMNLLETITQIGLLNQRKNKPKWQLSIQTHKIVGI 205 >gi|121533882|ref|ZP_01665708.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1] gi|121307393|gb|EAX48309.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1] Length = 196 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 98/220 (44%), Gaps = 43/220 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + EIF ++QGEG H G A F R +GCNL +CR+CDT Sbjct: 6 YPVVEIFTSIQGEGTHMGLPAAFIRLAGCNL-----------RCRWCDT-VHAFDPANAT 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 D++A + Q + V+TGGEP L PL+ AL+ RG +A+ETNGT Sbjct: 54 YLTPDEIATGLAPQLV---------VITGGEPTLHDLGPLVAALHARGKYVAIETNGTNP 104 Query: 124 PPQ--GIDWICVSPKAGC---------DLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 P+ GIDW+ SPK +LK E L + P I E S Sbjct: 105 IPEKWGIDWVTASPKPNSGYLLACQADELKYVVDDEFTLDCVADDAVPPGRIFLQVE--S 162 Query: 173 LQPMDGPFLEENTNLAISYCFQNPK--WRLSVQTHKFIGI 210 +P E+ A + +NP+ RL +Q HK +G+ Sbjct: 163 ARP-------ESAKKAFALVMENPERGLRLGIQLHKILGV 195 >gi|78185803|ref|YP_378237.1| organic radical activating protein [Synechococcus sp. CC9902] gi|78170097|gb|ABB27194.1| possible organic radical activating enzyme [Synechococcus sp. CC9902] Length = 205 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 104/222 (46%), Gaps = 41/222 (18%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F +LQGEG H GR A F R +GCN+ C +CDT + Sbjct: 9 VVETFHSLQGEGHHYGRSAFFIRLAGCNV-----------GCTWCDTKHSWPMANH-AKQ 56 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTIEP 124 +VD LA + G + V+TGGEPL PL AL++ G I +ET+G + Sbjct: 57 DVDALAVQATQAKDAG---AAFVVITGGEPLHHNLQPLTDALDRSCGLPIHLETSGVDQL 113 Query: 125 PQGIDWICVSPK----------AGCDLKIKGGQELKLVFPQV-NVSPENYIGFDFE---R 170 DW+ +SPK + CD ELK+V +VS + + D Sbjct: 114 SGRFDWVTLSPKRHHPPQQALLSRCD-------ELKVVVLDTDDVSFAHAMANDTSTAAH 166 Query: 171 FSLQPM-DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +QP+ D +E LAI + Q+P+WRLS+Q HKF+ IR Sbjct: 167 LLVQPVWDSETAQE---LAIHHVKQHPRWRLSLQNHKFLQIR 205 >gi|78214102|ref|YP_382881.1| organic radical activating protein [Synechococcus sp. CC9605] gi|78198561|gb|ABB36326.1| possible organic radical activating enzyme [Synechococcus sp. CC9605] Length = 205 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 111/222 (50%), Gaps = 41/222 (18%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG-R 64 + E F +LQGEG HAGR A F R +GC + C +CDT +KG Sbjct: 9 VVETFHSLQGEGHHAGRSAFFIRLAGCTV-----------GCPWCDTKHS--WPSKGHPE 55 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTIE 123 +D LAD + + GE + V+TGGEPL PL QAL+ R G + +ET+G ++ Sbjct: 56 QPIDALADAAQ---MAGEVGAGFVVITGGEPLHHDLQPLTQALDARCGLPLHLETSG-VD 111 Query: 124 PPQG-IDWICVSPKAGCDLK---IKGGQELKLVFPQVNVSPENYIGF----------DFE 169 P G DWI +SPK + ++ ELK+V PE+ I F D E Sbjct: 112 PISGRFDWITLSPKRHRPPRQELLQACHELKVVV----HGPED-ISFAAAMASQCENDTE 166 Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 R LQP G LA+ + Q+ +WRLS+Q+HK++ IR Sbjct: 167 RL-LQP--GWECSIGEALAVEHVRQHSRWRLSMQSHKWLRIR 205 >gi|223041979|ref|ZP_03612163.1| hypothetical protein AM202_0574 [Actinobacillus minor 202] gi|223017236|gb|EEF15664.1| hypothetical protein AM202_0574 [Actinobacillus minor 202] Length = 206 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 112/226 (49%), Gaps = 47/226 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G ++F RF CNL C +CDT + + Sbjct: 8 YPIVEIFESLQGEGFNTGMPSIFIRFGKCNL-----------TCSWCDTPY-----HQFD 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + Q+ + +E + + ++TGGEP +Q ++ L+ L +RG+ +A+ETNG Sbjct: 52 SWTLPQILEKVEGY------QAKNIIITGGEPTIQPNLTVLLDELKRRGYFLAIETNGLK 105 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--------DFE 169 + P ID+I SPK K I E+++ V+ EN I F E Sbjct: 106 DIPSQIDYIATSPKRLYAEKYQRRCIPFAHEVRI------VADENVIAFCEQIEAQISAE 159 Query: 170 RFSLQP--MDGP--FLEENTNLAISYCFQN-PKWRLSVQTHKFIGI 210 R+ L P ++G LE T + + +N PKW+LS+QTHK +GI Sbjct: 160 RYYLSPCEVEGKMNLLETITQIGLLNQRKNKPKWQLSIQTHKIVGI 205 >gi|52425912|ref|YP_089049.1| NrdG protein [Mannheimia succiniciproducens MBEL55E] gi|52307964|gb|AAU38464.1| NrdG protein [Mannheimia succiniciproducens MBEL55E] Length = 224 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 105/226 (46%), Gaps = 47/226 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G +F RF CNL C +CDTD+ Sbjct: 26 YPIVEIFESLQGEGFNTGMPCIFVRFGKCNL-----------ACPWCDTDY--------E 66 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTI 122 R+ L ++E+ + ++TGGEP +Q ++ L+ A KR G+ +A+ETNG Sbjct: 67 RFEYRTLQQIVEK---VRSFSAKNIIITGGEPTIQPNISLLLAQFKRDGYFLAIETNGLR 123 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI-----GFDFERFS 172 P ID+I SPKA K I E+++V ++ EN+ ER+ Sbjct: 124 AVPPQIDYISASPKAMYAEKYRRRCIDFAHEVRIV---MDADAENFCQQIEQKIRAERYY 180 Query: 173 LQPMDGPFLEENTNLAISYCF--------QNPKWRLSVQTHKFIGI 210 L P + +E NL + PKW+LS+QTHK GI Sbjct: 181 LSPCE---IEGKMNLLETIALLGKLNQRPNKPKWQLSIQTHKLAGI 223 >gi|313676966|ref|YP_004054962.1| radical sam domain protein [Marivirga tractuosa DSM 4126] gi|312943664|gb|ADR22854.1| Radical SAM domain protein [Marivirga tractuosa DSM 4126] Length = 207 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 104/214 (48%), Gaps = 30/214 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F T+QGEG H+G+ A F R GC++ C +CD ++ Sbjct: 14 LMESFYTIQGEGFHSGKAAYFIRLGGCDV-----------GCVWCDVK----DSWDADKW 58 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 + ++ D++++ + + E R V+TGGEP + L + L ++GF + VET+G Sbjct: 59 PLKKIDDIVDDAY---QYESRLAVITGGEPFMYDMHGLTKRLLQKGFHVNVETSGAHPFT 115 Query: 126 QGIDWICVSP---KAGCDLKIKGGQELKLV------FPQVNVSPENYIGFDFERFSLQPM 176 +DW+C+SP KA + ELK++ F E +G D + LQP Sbjct: 116 GMVDWVCLSPKKFKAPLEHWYDRADELKIIIFNKSDFKWAEEHAEK-VGSDC-KLMLQP- 172 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + EE L + Y +NP W +S+QTHK++ I Sbjct: 173 EWSKREEMMPLIVEYVKENPNWGISLQTHKYLQI 206 >gi|262341203|ref|YP_003284058.1| radical SAM domain-containing protein [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272540|gb|ACY40448.1| radical SAM domain-containing protein [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 201 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 104/223 (46%), Gaps = 36/223 (16%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + IKE F ++QGEG + G A F RF GCN+ +C +CDT + Sbjct: 1 MISFPIKESFYSIQGEGFYYGMAAFFIRFEGCNI-----------KCDWCDTK----ESW 45 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 K + + + ++I + V+TGGEP++ L + L K+G+ I VET+G Sbjct: 46 KIKKKDFIPIHEIINH---ISNYTVKNIVITGGEPMMWNLYHLTKILKKKGYRIHVETSG 102 Query: 121 TIEPPQG-IDWICVSPKA---GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176 T + +DWI VSPK + K ELK++ +S E F E+ Sbjct: 103 TYPIEEKYMDWITVSPKKIKLPLEENYKKTNELKII-----ISNEKDFLFAEEQAIHVKT 157 Query: 177 DGPFL---EENTNLA------ISYCFQNPKWRLSVQTHKFIGI 210 FL E TN ISY +NPKWR+S+Q HK + I Sbjct: 158 TNCFLFLQPEWTNFVTIFPKIISYIKENPKWRISLQIHKMLNI 200 >gi|219871538|ref|YP_002475913.1| anaerobic ribonucleotide reductase activating protein NrdG [Haemophilus parasuis SH0165] gi|219691742|gb|ACL32965.1| anaerobic ribonucleotide reductase activating protein NrdG [Haemophilus parasuis SH0165] Length = 204 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 104/225 (46%), Gaps = 45/225 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF TLQGEG + G ++F RF CNL C +CDT++ Sbjct: 6 YRIVEIFETLQGEGFNTGMPSIFIRFGKCNL-----------ACPWCDTNY--------N 46 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 +Y LAD+++ + + ++TGGEP +Q D+ L+ L G+ IA+ETNG Sbjct: 47 QYETKTLADIMQ---VVKGFSAKNIIITGGEPTIQPDLTYLLDTLKAEGYFIAIETNGLK 103 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN----VSPENYIGF--------DFER 170 P ID+I SPK ++ LK P N V + + F ER Sbjct: 104 PVPPQIDYIATSPK-----RLYQKNYLKHHIPFANEVRIVVDGDVLAFCEQIESTIKAER 158 Query: 171 FSLQPMDG----PFLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210 + L P + LE T L ++ P+W+LS+QTHK GI Sbjct: 159 YYLSPCEENGVMNMLETITQLGKLNQRPNKPRWQLSIQTHKMAGI 203 >gi|126662368|ref|ZP_01733367.1| hypothetical protein FBBAL38_03415 [Flavobacteria bacterium BAL38] gi|126625747|gb|EAZ96436.1| hypothetical protein FBBAL38_03415 [Flavobacteria bacterium BAL38] Length = 210 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 96/216 (44%), Gaps = 27/216 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 ++ + E F T+QGEG H G A F R GC++ C +CD ++ + Sbjct: 14 EMLPLMEEFYTIQGEGYHTGTAAYFIRIGGCDV-----------GCHWCD-----VKESW 57 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + D+I +K V+TGGEPL L L ++ + +ET+G Sbjct: 58 NAELHPPTNTDIIVSN---AKKYADTVVVTGGEPLTWDMTLLTSKLKEQNLRVHIETSGA 114 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 E DW C+SPK L ++ ++ + + ++I + + + P FL Sbjct: 115 YEVTGTWDWFCLSPKKN-KLPVQSAYDIANELKVIIYNKHDFIFAEEQAAKVNPNAILFL 173 Query: 182 -------EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 EE T L + Y NPKWR+S+QTHK++ I Sbjct: 174 QPEWSKKEEMTPLIVDYVMNNPKWRVSLQTHKYLNI 209 >gi|159030634|emb|CAO88302.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 224 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 101/218 (46%), Gaps = 33/218 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + E F ++QGEG G A F R GC+++ C +CD + Sbjct: 30 YPVVETFHSVQGEGFWTGSNAFFLRLGGCDVY-----------CPWCDQK----ESWNAH 74 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 RY L +L+E + + V+TGGEPL+ PL + +G + +ET+G Sbjct: 75 RYPQKSLGELVE---MAKDANPAMVVITGGEPLMHNLAPLTEEFKNQGLRVHLETSGA-H 130 Query: 124 PPQGI-DWICVSPKA--GCDLKIKGG-QELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 P G+ DW+ SPK D I ELK+V +PE+ + L Sbjct: 131 PFTGVFDWVTFSPKTYKMPDPSIYARVNELKIVV----ANPEDLDWAAMQESKLSEGVIK 186 Query: 180 FLE------ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +L+ E+ L +Y ++P+WRLS+QTHKF+G+R Sbjct: 187 YLQPEWNTAESKELVFNYVLRHPQWRLSLQTHKFLGVR 224 >gi|295135621|ref|YP_003586297.1| radical SAM superfamily protein [Zunongwangia profunda SM-A87] gi|294983636|gb|ADF54101.1| radical SAM superfamily protein [Zunongwangia profunda SM-A87] Length = 223 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 103/221 (46%), Gaps = 39/221 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + E F T+QGEG H G A F R GC++ C +CD + Sbjct: 28 MLPLMEEFYTIQGEGYHKGTAAYFIRIGGCDV-----------GCHWCDVK----ESWNA 72 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 G + + +++E K + V+TGGEPL L +L K+G +I +ET+G Sbjct: 73 GLHPPTHVGEIVE----NALKYSKTIVITGGEPLTWDMTTLTDSLKKQGCQIHIETSGAY 128 Query: 123 EPPQGI-DWICVSPKAGCDLKIKGGQ-ELKLVFPQVNVSPENYIGFDFER---------- 170 P GI DWIC+SPK KIK + E+ V ++ V N F F Sbjct: 129 -PLTGIWDWICLSPK-----KIKLPEPEIYPVANELKVIIFNKHDFKFAEEQAAQVGEHC 182 Query: 171 -FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP + E+ L + Y +NPKW++S+QTHK++ I Sbjct: 183 ILYLQP-EWSNREKMIPLIVDYVMRNPKWKVSLQTHKYLNI 222 >gi|157803532|ref|YP_001492081.1| 50S ribosomal protein L35 [Rickettsia canadensis str. McKiel] gi|157784795|gb|ABV73296.1| 50S ribosomal protein L35 [Rickettsia canadensis str. McKiel] Length = 225 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 108/223 (48%), Gaps = 36/223 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 +K IF T+QGEG G A+F R GCNL C FCDT+F Sbjct: 20 VKSIFKTIQGEGIFVGSPAIFVRLGGCNLA-----------CHFCDTEFEDFD-----LV 63 Query: 66 NVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122 ++ ++ + +E + EK V+TGGEP+ Q L Q L R F++ +ETNGT+ Sbjct: 64 DITEILNKVESLALNSKNEKSVNLVVITGGEPMRQPIALLCQKLLDRDFKVQIETNGTLY 123 Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENYIGFDF------ERFSL- 173 P + IC SPKAG K ++L V + +N + + F +++ Sbjct: 124 RSLPNEVSIIC-SPKAGQTGYSKIREDLLSQISAVKFIVAKNILEYSFIPEVGQTAYNIP 182 Query: 174 ---QPMD--GPFL-EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 QPMD P L +EN LA+ ++ +LS+QTHKF+GI Sbjct: 183 VFVQPMDQNNPKLNDENNALAVKLALES-GSKLSLQTHKFLGI 224 >gi|88803479|ref|ZP_01119005.1| hypothetical protein PI23P_12842 [Polaribacter irgensii 23-P] gi|88781045|gb|EAR12224.1| hypothetical protein PI23P_12842 [Polaribacter irgensii 23-P] Length = 209 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 100/217 (46%), Gaps = 31/217 (14%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + E F T+QGEG H G A F R GC++ C +CD ++ + Sbjct: 14 MLPLMEEFYTIQGEGCHTGTAAYFIRVGGCDV-----------GCHWCD-----VKESWN 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + LAD I E +K V+TGGEPL+ + ++L K + +ET+G Sbjct: 58 ADLHPPTLADTIVEN---VKKHANTVVITGGEPLMWSMDYITESLQKNSIKTHIETSGAY 114 Query: 123 EPPQGIDWICVSPKAG---CDLKIKGGQELKLVFPQVNVSPENYIGFDFER------FSL 173 DW C+SPK D ELK++ N S + + E+ L Sbjct: 115 AFSGKWDWFCLSPKKTKMPLDECYPEADELKMIIH--NKSDFIFAEQEAEKVGQKCQLYL 172 Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 QP + E+ T L ++Y +NPKW++S+QTHKF+ I Sbjct: 173 QP-EWSKKEKMTALIVAYVMKNPKWKISLQTHKFLNI 208 >gi|255033903|ref|YP_003084524.1| hypothetical protein Dfer_0088 [Dyadobacter fermentans DSM 18053] gi|254946659|gb|ACT91359.1| conserved hypothetical protein [Dyadobacter fermentans DSM 18053] Length = 193 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 98/218 (44%), Gaps = 42/218 (19%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 E F TLQGEG H+GR A F R GC++ C +CD + ++++ Sbjct: 2 EAFYTLQGEGQHSGRAAYFIRLGGCDV-----------GCHWCDVK-ESWDASIHPKFDI 49 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQG 127 + + D + GR V+TGGEPL+ L AL + GF+ +ET+G Sbjct: 50 NAIVDG------ALQYPGRLAVITGGEPLMYNLDALTGALQEAGFKTNIETSGVYPFTGH 103 Query: 128 IDWICVSPK----AGCDLKIKGGQELKLVF-----------PQVNVSPENYIGFDFERFS 172 DW+C SPK D+ K ELK + VSPE + E +S Sbjct: 104 WDWVCFSPKKFKTPHPDI-YKNADELKTIIYNKSDFDFAEEHAAKVSPECTLLMQPE-WS 161 Query: 173 LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 Q + P L I Y NPKW++S+QTHKF+ I Sbjct: 162 KQDVMLP-------LIIDYIKDNPKWKMSLQTHKFMNI 192 >gi|319779040|ref|YP_004129953.1| Queuosine Biosynthesis QueE Radical SAM [Taylorella equigenitalis MCE9] gi|317109064|gb|ADU91810.1| Queuosine Biosynthesis QueE Radical SAM [Taylorella equigenitalis MCE9] Length = 222 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 107/232 (46%), Gaps = 53/232 (22%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + I EIF +LQGEG + G A F R CNL C +CDT+ Sbjct: 18 FRIVEIFKSLQGEGFNTGMPATFVRLGRCNL-----------ACGWCDTN---------- 56 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122 YN L L E I + +LTGGEP + +V L I+A RG+ + +ETNG Sbjct: 57 -YNSFGLKSLSEILQIVEDLGQSNIILTGGEPSVHPNVELLIEAFKSRGYYLCIETNGIS 115 Query: 123 EPPQGIDWICVSPKAGC------DLKIKGGQELKLVFPQVNVSPENYIG--------FDF 168 + P+GID+I +SPK C + ++ E+++V + E+++ F+ Sbjct: 116 DVPEGIDYIAISPKY-CYKERYEKVGLRYADEIRIVVDFNETNREDFLNWLQDINEKFNS 174 Query: 169 ERFSLQPMDGPFLEENTNLAISYCFQ----------NPKWRLSVQTHKFIGI 210 +++ L P LE + ++ I + P+W LS+QTHK GI Sbjct: 175 KKYYLSP-----LEHDGSMNIQQTIKIIGELNGLKIGPRWELSLQTHKLAGI 221 >gi|261749286|ref|YP_003256971.1| hypothetical protein BPLAN_199 [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497378|gb|ACX83828.1| conserved hypothetical protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 204 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 102/215 (47%), Gaps = 27/215 (12%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + +KE F ++QGEG +G A F RF GCN+ QC +CDT + K Sbjct: 8 FPVKETFYSIQGEGFFSGIAAYFIRFEGCNI-----------QCDWCDTK-SSWKIEKKD 55 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 V ++ + I E+ + V+TGGEP++ PL L K+G+ I VET+G+ Sbjct: 56 FLTVHKIINNINEK-------VKTIVITGGEPMMWNLTPLTSLLKKKGYRIHVETSGSYP 108 Query: 124 -PPQGIDWICVSPKAG---CDLKIKGGQELKLVF-PQVNVSPENYIGFDFERFSLQPMDG 178 + IDWI +SPK K ELK++ + + S F ++ + Sbjct: 109 IHEKDIDWITISPKKKKRPLKENYKKMNELKIIICNESDFSFAEEQAFYVKKSNCVLCLQ 168 Query: 179 PFLEENTNL---AISYCFQNPKWRLSVQTHKFIGI 210 P + N + ISY +PKW++S+Q HK + I Sbjct: 169 PEWKNNIKILPKIISYIKNHPKWKISLQIHKILNI 203 >gi|86132652|ref|ZP_01051245.1| radical SAM superfamily protein [Dokdonia donghaensis MED134] gi|85816894|gb|EAQ38079.1| radical SAM superfamily protein [Dokdonia donghaensis MED134] Length = 213 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 98/223 (43%), Gaps = 41/223 (18%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 ++ + E F T+QGEG H G A F R GC++ C +CD ++ + Sbjct: 17 EMLPLMEEFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCD-----VKESW 60 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + A+ I E K V+TGGEPL+ PL + L G +ET+G Sbjct: 61 DAAIHPPTNANTIAEN---AAKYSDTIVVTGGEPLMWDMNPLTKKLKSLGLTTHIETSGA 117 Query: 122 IEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVNVSPENYIGFDFER-------- 170 E DWIC+SPK K ++ ELK++ N FDF Sbjct: 118 YELSGDWDWICLSPKKRMLPKASVLEKANELKVII-------FNKSDFDFAEKHATQVGE 170 Query: 171 ---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP + ++ L + Y +NPKW++S+QTHK++ I Sbjct: 171 DCILYLQP-EWSVRDKMVPLIVDYVMKNPKWKVSLQTHKYLNI 212 >gi|78780168|ref|YP_398280.1| putative organic radical activating protein [Prochlorococcus marinus str. MIT 9312] gi|78713667|gb|ABB50844.1| organic radical activating enzyme-like protein [Prochlorococcus marinus str. MIT 9312] Length = 225 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 104/230 (45%), Gaps = 41/230 (17%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 E F +LQGEG HAG+ A F R +GC + C +CDT +Y Sbjct: 11 EQFHSLQGEGYHAGKSAFFVRLAGCEV-----------GCSWCDTK----HSWDENKYPS 55 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGFEIAVETNG 120 + +I+ I E+ +CV+TGGEPL +A+ + +I +ET+G Sbjct: 56 VSIEKIIDRIKIAREQGASFCVITGGEPLQHNLDKFCKAIKQMKMGKEQNSMKIHIETSG 115 Query: 121 TIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQ-------VNVSPENYIGFDFER 170 DWI +SPK K +K E+K++ + + + E ++F + Sbjct: 116 VNSISGSYDWITLSPKRHSPPKNYFLKNCNEIKIIINEKEDIEFAIQIKKEILKQYEFSK 175 Query: 171 F--SLQPMDGPFL-------EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 SL+ D F ++ +LAI + NP W+LS+QTHK++ I+ Sbjct: 176 IEDSLKKEDKIFYLQPAWNNKDGFSLAIDFVKNNPDWKLSLQTHKYLKIK 225 >gi|319945214|ref|ZP_08019476.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Lautropia mirabilis ATCC 51599] gi|319741784|gb|EFV94209.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Lautropia mirabilis ATCC 51599] Length = 244 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 104/222 (46%), Gaps = 39/222 (17%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF TLQGEG + G +VF RF CNL C +CDTD+ Sbjct: 46 YRIVEIFETLQGEGFNTGMPSVFIRFGKCNL-----------ACPWCDTDY--------N 86 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 R+ L D++ + R ++TGGEP +Q + L+ +L G +A+ETNG Sbjct: 87 RFGTMTLGDILAK---VRTFSARNVIITGGEPTIQPHLERLLDSLKAEGHFLAIETNGLK 143 Query: 123 EPPQGIDWICVSPK-----AGCDLKIKGGQELKLVFP----QVNVSPENYIGFDFERFSL 173 P ID+I SPK A IK E+++V E+ I D R+ L Sbjct: 144 PVPPQIDYIATSPKRLYQQAYQKRHIKFAHEVRIVVDGDVRDFCAQIEDSIQAD--RYYL 201 Query: 174 QP--MDG--PFLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210 P +DG LE T L ++ P+W+LS+QTHK GI Sbjct: 202 SPCEVDGRMNMLETITQLGQLNQRPGRPRWQLSIQTHKLAGI 243 >gi|225011685|ref|ZP_03702123.1| Radical SAM domain protein [Flavobacteria bacterium MS024-2A] gi|225004188|gb|EEG42160.1| Radical SAM domain protein [Flavobacteria bacterium MS024-2A] Length = 210 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 94/212 (44%), Gaps = 27/212 (12%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F TLQGEG H G A F R GC++ C +CD + + Sbjct: 18 LMEAFYTLQGEGYHKGSAAYFIRIGGCDV-----------GCHWCDVK----ESWNADLH 62 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 Q+ ++ E +K V+TGGEPL+ PL AL+K +I +ET+G Sbjct: 63 PPTQIDSIVAE----AKKYSDTVVVTGGEPLMWKMDPLTDALHKEDMQIHIETSGAYSLS 118 Query: 126 QGIDWICVSPKAGCDLKIKG---GQELKLVF---PQVNVSPENYIGFDFE-RFSLQPMDG 178 DW C+SPK ++ ELK++ + E E + LQP + Sbjct: 119 GSWDWFCLSPKKNKLPIVEAYAVADELKMIVYNKDDFRFAEEQAAKVGQECKLFLQP-EW 177 Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E L + Y NPKW++S+QTHK++ I Sbjct: 178 SKRETVMPLLVDYVLGNPKWKVSLQTHKYLNI 209 >gi|166365320|ref|YP_001657593.1| hypothetical protein MAE_25790 [Microcystis aeruginosa NIES-843] gi|166087693|dbj|BAG02401.1| hypothetical protein MAE_25790 [Microcystis aeruginosa NIES-843] Length = 205 Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 100/218 (45%), Gaps = 33/218 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + E F ++QGEG G A F R GC+++ C +CD + Sbjct: 11 YPVVETFHSVQGEGFWTGSNAFFLRLGGCDVY-----------CPWCDQK----ESWNAH 55 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 RY L +L+E + V+TGGEPL+ PL + L +G + +ET+G Sbjct: 56 RYPQQSLRELVE---MAKGANPAMVVITGGEPLMHNLDPLTKELKNQGLRVHLETSGA-H 111 Query: 124 PPQGI-DWICVSPKA--GCDLKIKGG-QELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 P G+ DW+ SPK D I ELK+V PE+ + L Sbjct: 112 PFTGVFDWVTFSPKTYKMPDPSIYARVNELKIVV----AHPEDLDWASMQESKLSEGVIK 167 Query: 180 FLE------ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +L+ E+ L +Y ++P+WRLS+QTHKF+G+R Sbjct: 168 YLQPEWNTAESKELVFNYVLRHPQWRLSLQTHKFLGVR 205 >gi|150026231|ref|YP_001297057.1| hypothetical protein FP2200 [Flavobacterium psychrophilum JIP02/86] gi|149772772|emb|CAL44256.1| Protein of unknown function YgcF [Flavobacterium psychrophilum JIP02/86] Length = 210 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 93/216 (43%), Gaps = 27/216 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 ++ + E F T+QGEG H G A F R GC++ C +CD ++ + Sbjct: 14 EMLPLMEEFYTIQGEGYHTGTAAYFIRIGGCDV-----------GCHWCD-----VKESW 57 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + D+I E K + V+TGGEPL L Q L ++ +ET+G Sbjct: 58 NAALHPPTKTDVIVEN---ATKYAKTIVVTGGEPLTWDMTVLTQRLKAENLQVHIETSGA 114 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 DW C+SPK L + E+ + + ++I + + + FL Sbjct: 115 YPVTGAWDWFCLSPKKN-KLPVAEAYEIAHELKVIIYNKHDFIFAEEQAAKVNKNAILFL 173 Query: 182 -------EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 EE T + Y NPKWR+S+QTHK++ I Sbjct: 174 QSEWSKKEEMTPFIVDYVMNNPKWRVSLQTHKYLNI 209 >gi|67924094|ref|ZP_00517541.1| Radical SAM [Crocosphaera watsonii WH 8501] gi|67854055|gb|EAM49367.1| Radical SAM [Crocosphaera watsonii WH 8501] Length = 213 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 97/222 (43%), Gaps = 41/222 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I E F +LQGEG G A F R +GC++ C +CD + Sbjct: 19 YPIVETFHSLQGEGTWTGVNAFFIRLAGCDV-----------HCPWCDQK----ESWTSK 63 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 +Y + L E ++ V+TGGEPL+ PL +AL K G + +ET+G+ Sbjct: 64 KYPQQSIKILAE---VSKMANPFMVVITGGEPLMYDLFPLTKALKKLGLRVHLETSGSHS 120 Query: 124 PPQGIDWICVSPKA-------------GCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 DW+ SPK + I ++L + P I + Sbjct: 121 FTGQFDWVTFSPKPFKLPHESIYSQVNELKIVIANQEDLHWAEEEAKKVPREAIKY---- 176 Query: 171 FSLQP-MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 LQP + P E+ +L Y ++P+WR+S+QTHKF+G+R Sbjct: 177 --LQPEWNTP---ESQSLIFDYILKHPQWRMSLQTHKFLGVR 213 >gi|261867762|ref|YP_003255684.1| NrdG protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413094|gb|ACX82465.1| NrdG protein [Aggregatibacter actinomycetemcomitans D11S-1] Length = 209 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 108/229 (47%), Gaps = 47/229 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y+I EIF +LQGEG + G +F RF CNL C +CDT++ Sbjct: 8 MPSYNIVEIFESLQGEGFNTGMPCIFVRFGKCNL-----------ACPWCDTNY------ 50 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 ++ LA ++EE K ++TGGEP + ++ L++ + G+ +A+ETN Sbjct: 51 --NQFERMTLAQVMEEVRSFSSKN---IIITGGEPTIVPNIEILLEQMKSEGYFLAIETN 105 Query: 120 GTIEPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF-------- 166 G P ID+I SPK K I E+++ V+ EN + F Sbjct: 106 GLKPIPPQIDYIATSPKRLYPHKYERRCIDFAHEVRI------VADENVMAFCELIEDKI 159 Query: 167 DFERFSLQP--MDGP--FLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210 ER+ L P ++G LE T L ++ PKW LSVQTHK IGI Sbjct: 160 RAERYYLSPCEINGKMNLLETITQLGQLNQRVNRPKWLLSVQTHKLIGI 208 >gi|332170651|gb|AEE19906.1| Radical SAM domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 213 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 97/223 (43%), Gaps = 41/223 (18%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 ++ + E F T+QGEG H G A F R GC++ C +CD ++ + Sbjct: 17 EMLPLMEEFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCD-----VKESW 60 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + A+ I E K V+TGGEPL+ PL L G +ET+G Sbjct: 61 DAAIHPPTNANTIAEN---AAKYSDTIVVTGGEPLMWDMNPLTHKLKSLGLTTHIETSGA 117 Query: 122 IEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVNVSPENYIGFDFER-------- 170 E DWIC+SPK K ++ ELK++ N FDF Sbjct: 118 YELSGEWDWICLSPKKRMLPKASVLEKANELKVII-------FNKSDFDFAEKHAAQVGE 170 Query: 171 ---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP + ++ L + Y +NPKW++S+QTHK++ I Sbjct: 171 DCILYLQP-EWSVRDKMVPLIVDYVMKNPKWKVSLQTHKYLNI 212 >gi|312129858|ref|YP_003997198.1| radical sam domain protein [Leadbetterella byssophila DSM 17132] gi|311906404|gb|ADQ16845.1| Radical SAM domain protein [Leadbetterella byssophila DSM 17132] Length = 202 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 95/218 (43%), Gaps = 38/218 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F TLQGEG H+G+ A F R GC++ C +CD + Sbjct: 9 VMESFYTLQGEGFHSGKAAYFIRLGGCDV-----------GCVWCDVK---------ESW 48 Query: 66 NVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 + + E + G E GR V+TGGEPL+ L L ++GF+ +ET+G Sbjct: 49 DAEAHPQFRVEDIVNGALEYPGRLAVITGGEPLMYDLNELTAELKQKGFQTNIETSGAHP 108 Query: 124 PPQGIDWICVSPKAGCDLKIKGG-QELKLVFPQVNVSPENYIGFDFERF---SLQPMDGP 179 DWIC SPK K K +E V ++ V N FDF + P Sbjct: 109 LSGDWDWICFSPK-----KFKAPLEEFYAVANELKVIVYNSSDFDFAEIHAAKVNPDCKL 163 Query: 180 FL-------EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 FL E + Y NP+WR+S+QTHK++ I Sbjct: 164 FLQVEWDRRERMMPSIVEYVKANPQWRVSIQTHKYMNI 201 >gi|260061953|ref|YP_003195033.1| hypothetical protein RB2501_10187 [Robiginitalea biformata HTCC2501] gi|88783515|gb|EAR14686.1| hypothetical protein RB2501_10187 [Robiginitalea biformata HTCC2501] Length = 210 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 94/220 (42%), Gaps = 37/220 (16%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + E F T+QGEG H G A F R GC++ C +CD ++ + Sbjct: 15 MLPLMEAFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCD-----VKESWN 58 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + D I V+TGGEPL+ PL L RG +I +ET+G Sbjct: 59 ADLHPPTAVDTIVRD---AAAASDTIVVTGGEPLMWDMAPLTSRLKSRGMKIHIETSGAY 115 Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER--------- 170 DWIC+SP KA + ELK++ V + + F E Sbjct: 116 PLTGTWDWICLSPKKNKAPVGDIHQRAHELKVI-----VYNRHDLKFAEEHAELTSPDCL 170 Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP + E T L + Y NP+WR+S+QTHK++ I Sbjct: 171 LYLQP-EWSVRERVTPLIVEYVMANPRWRVSLQTHKYLNI 209 >gi|293390438|ref|ZP_06634772.1| NrdG protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950972|gb|EFE01091.1| NrdG protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 224 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 108/229 (47%), Gaps = 47/229 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y+I EIF +LQGEG + G +F RF CNL C +CDT++ Sbjct: 23 MPSYNIVEIFESLQGEGFNTGMPCIFVRFGKCNL-----------TCPWCDTNY------ 65 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 ++ LA ++EE + ++TGGEP + ++ L++ + G+ +A+ETN Sbjct: 66 --NQFERMTLAQVMEE---VRSFSSKNIIITGGEPTIVPNIEILLEQMKSEGYFLAIETN 120 Query: 120 GTIEPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF-------- 166 G P ID+I SPK K I E+++ V+ EN + F Sbjct: 121 GLKPIPPQIDYIATSPKRLYPNKYERRCIDFAHEVRI------VADENVMAFCELIEDKI 174 Query: 167 DFERFSLQP--MDGP--FLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210 ER+ L P ++G LE T L ++ PKW LSVQTHK IGI Sbjct: 175 RAERYYLSPCEINGKMNLLETITQLGQLNQRVNRPKWLLSVQTHKLIGI 223 >gi|86133041|ref|ZP_01051623.1| radical SAM superfamily protein [Polaribacter sp. MED152] gi|85819904|gb|EAQ41051.1| radical SAM superfamily protein [Polaribacter sp. MED152] Length = 210 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 97/222 (43%), Gaps = 41/222 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + E F T+QGEG H G A F R GC++ C +CD ++ + Sbjct: 15 MLPLMEEFYTIQGEGSHTGTAAYFIRVGGCDV-----------GCHWCD-----VKESWN 58 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + +AD I E +K V+TGGEPL+ + + L K + +ET+G Sbjct: 59 ADLHPPTMADSIIEN---VKKYTDTVVITGGEPLMWSMDYITELLQKNNIKTHIETSGAY 115 Query: 123 EPPQGIDWICVSPKAG---CDLKIKGGQELKLVFPQVNVSPENYIGFDFE---------- 169 DW C+SPK + ELK++ N FDF Sbjct: 116 SFSGKWDWFCLSPKKTKLPLTENYREADELKMII-------HNKSDFDFAEEQATKVGKK 168 Query: 170 -RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + LQP + E+ T L + Y +NPKW++S+QTHK++ I Sbjct: 169 CQLFLQP-EWSKKEKMTELIVDYVMKNPKWKVSLQTHKYLNI 209 >gi|86141192|ref|ZP_01059738.1| hypothetical protein MED217_04222 [Leeuwenhoekiella blandensis MED217] gi|85831751|gb|EAQ50206.1| hypothetical protein MED217_04222 [Leeuwenhoekiella blandensis MED217] Length = 213 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 97/223 (43%), Gaps = 41/223 (18%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 +L + E F T+QGEG H G A F R GC++ C +CD + Sbjct: 17 ELLPLMEEFYTIQGEGYHTGTPAYFIRVGGCDV-----------GCHWCDVK----ESWD 61 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + + A ++ +K + V+TGGEPL+ L L G ++ +ET+G Sbjct: 62 AAIHPPTEAAAIVA----NAKKYSKTIVITGGEPLMWDMNHLTSMLKAEGLQVHIETSGA 117 Query: 122 IEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVNVSPENYIGFDFE--------- 169 E DWIC+SPK K + ELK++ N F F Sbjct: 118 YELSGHWDWICLSPKKRMLPKPRIYEEAHELKVII-------YNKSDFAFAEEHAAKVNG 170 Query: 170 --RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + LQP + E+ T L + Y NPKW++S+QTHK++ I Sbjct: 171 NCQLFLQP-EWSVREKMTPLIVDYVMANPKWKVSLQTHKYLNI 212 >gi|284929204|ref|YP_003421726.1| organic radical activating enzyme [cyanobacterium UCYN-A] gi|284809648|gb|ADB95345.1| organic radical activating enzyme [cyanobacterium UCYN-A] Length = 208 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 98/222 (44%), Gaps = 35/222 (15%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + Y I E F ++QGEG G A F R +GCN+ C +CD T Sbjct: 11 LTTYPIAETFHSIQGEGAWTGVSAFFIRLAGCNV-----------GCPWCDQKESWTDKT 59 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 +Y+ + L+ ++ V+TGGEPL+ PL L K G +I +ET+G Sbjct: 60 -FPKYSSEMLSTKAQQA------NASIVVITGGEPLMYNLFPLTDKLRKLGMKIHLETSG 112 Query: 121 TIEPPQGIDWICVSPK-----------AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169 + +W+ SPK +LKI + + + S N +F Sbjct: 113 SYPFSGNFNWVTFSPKPFKAPHESIYVKASELKIIIADQKDFEWAEKQKSKTNSQSINF- 171 Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 LQP +++L Y ++P+WR+S+QTHKF+G+R Sbjct: 172 ---LQPEWNS--RTSSSLIYKYICKHPEWRMSLQTHKFLGVR 208 >gi|91215960|ref|ZP_01252929.1| hypothetical protein P700755_15536 [Psychroflexus torquis ATCC 700755] gi|91185937|gb|EAS72311.1| hypothetical protein P700755_15536 [Psychroflexus torquis ATCC 700755] Length = 210 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 98/219 (44%), Gaps = 35/219 (15%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + E F T+QGEG H G A F R GC++ C +CD + Sbjct: 15 MLPLMEEFYTIQGEGYHTGTAAYFIRIGGCDV-----------GCHWCDVK----ESWDP 59 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ ++ +IE +K V+TGGEPL L Q L I +ET+G Sbjct: 60 ERHPPTRIGSIIE----NAKKYSNTIVITGGEPLTWDMSMLTQGLKDNQLSIHIETSGAY 115 Query: 123 EPPQGIDWICVSPKAGC-----------DLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171 + DWIC+SPK +LK+ + F + + S +G D E F Sbjct: 116 DLTGVWDWICLSPKKNKLPKPEIYPKVDELKVIIFNKHDFKFAEEHAS---QVGEDCELF 172 Query: 172 SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP + E+ T + Y ++PKWR+S+QTHK++ I Sbjct: 173 -LQP-EWSVREKMTPQIVEYVMKHPKWRISLQTHKYLNI 209 >gi|229497033|ref|ZP_04390738.1| NrdG protein [Porphyromonas endodontalis ATCC 35406] gi|229316135|gb|EEN82063.1| NrdG protein [Porphyromonas endodontalis ATCC 35406] Length = 212 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 94/217 (43%), Gaps = 33/217 (15%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +LQGEG G VF R S CNL +C +CDTDF + Sbjct: 18 VNEIFYSLQGEGAQVGLPMVFIRLSSCNL-----------RCSYCDTDF--------SSF 58 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 L ++ E + TGGEP L + ++ +++G+ ++ETNGT P Sbjct: 59 TPMSLEAIVAE---LASFPTHNILWTGGEPTLHLTEEVVGFFHQKGYRQSIETNGTRPVP 115 Query: 126 QGIDWICVSPKAGCDLKI-----KGGQELKLVFPQVNVSPENYIGFDFER-FSLQPMDGP 179 +GID+I S K + G E + F P R + L P+ P Sbjct: 116 RGIDYITCSAKPESFPHLWENFPHGVDEWRFPFGASAPLPPAIESLPPARTYCLSPIYEP 175 Query: 180 ---FLEENTNL--AISYCFQNPKWRLSVQTHKFIGIR 211 L+ L I Y Q+P WRLS+Q HK IGI+ Sbjct: 176 GEAILQPPHALEECIEYIKQHPTWRLSIQLHKIIGIQ 212 >gi|110638115|ref|YP_678324.1| organic radical activating enzyme [Cytophaga hutchinsonii ATCC 33406] gi|110280796|gb|ABG58982.1| conserved hypothetical protein; possible organic radical activating enzyme [Cytophaga hutchinsonii ATCC 33406] Length = 205 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 97/212 (45%), Gaps = 26/212 (12%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F T+QGEG + GR A F R +GC++ C +CD + ++ Sbjct: 12 VMESFYTIQGEGHYQGRAAYFIRLAGCDV-----------GCHWCDVK----ESWDASQH 56 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 + + ++ E GR V+TGGEPL+ L L + GF +ET+G Sbjct: 57 PMQTIEHMVAE---ASAFTGRIAVITGGEPLMHDLTNLTAQLKQEGFRNHIETSGAHPLS 113 Query: 126 QGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVSPENYIGFDFE---RFSLQPMDG 178 DWIC+SP KA I+ ELK +VF ++ + + LQP + Sbjct: 114 GEWDWICLSPKKFKAPLPSVIEACDELKIIVFHSSDIEWAKTFLPKLKKGCKLFLQP-EW 172 Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 EE IS+ +NP+W +S+Q HKF+ I Sbjct: 173 SRQEEMLPQIISFVKENPEWEISLQIHKFMNI 204 >gi|157962169|ref|YP_001502203.1| radical SAM domain-containing protein [Shewanella pealeana ATCC 700345] gi|157847169|gb|ABV87668.1| Radical SAM domain protein [Shewanella pealeana ATCC 700345] Length = 222 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 106/238 (44%), Gaps = 50/238 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQD-RLSAQCRFCDTDFVGIQG 59 Y + E+F T+QGEG H G A+F R GC + W +Q L R + + G Sbjct: 3 YPVNEVFETIQGEGTHTGVPAIFVRLQGCPVGCSWCDTKQTWELLEDNRVAPDLVIQVDG 62 Query: 60 TKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 T G V+QL E++ T + V+TGGEP L L Q L+ +G++ +E Sbjct: 63 TVGRWSELTVEQLVSAFEDKGFT----AKLVVITGGEPCLYDLSELTQYLHAQGYQTQIE 118 Query: 118 TNGTIEPPQGID-WICVSPKAGCDLKIKGG------------------------QELKLV 152 T+GT + D W+ VSPK + +KGG EL L+ Sbjct: 119 TSGTFDVLCHPDTWVTVSPK----VNMKGGYAVLAQALNRANEIKHPVATQKHIDELDLL 174 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +N++ + LQP+ + T LA+ C + WRLSVQTHK++ I Sbjct: 175 LEDINLTGKT--------VCLQPISQ--IPRATELAMKTCIER-NWRLSVQTHKYLNI 221 >gi|157375186|ref|YP_001473786.1| radical activating enzyme [Shewanella sediminis HAW-EB3] gi|157317560|gb|ABV36658.1| radical activating enzyme [Shewanella sediminis HAW-EB3] Length = 222 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 109/234 (46%), Gaps = 42/234 (17%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y + E+F T+QGEG G A+F R GC + W E++R++ + Sbjct: 3 YPVNEVFETIQGEGFFTGVPAIFVRLQGCPVGCSWCDTKHTWDVIEENRVAPEL------ 56 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKE----GRYCVLTGGEPLLQVDVPLIQALNK 109 + + GT G + A+L E+ I+ K ++ V+TGGEP L +PL ++LN Sbjct: 57 VIQVDGTIG------RWAELTAEELISNFKAKGFTAKHVVITGGEPCLHDLIPLTESLNL 110 Query: 110 RGFEIAVETNGTIEPP-QGIDWICVSP----KAGCDL----KIKGGQELKLVFPQVNVSP 160 G+ +ET+GT E W+ VSP KAG + I+ + V Q ++ Sbjct: 111 SGYATQIETSGTFEVICSDKTWVTVSPKINMKAGLPILNQALIRANEIKHPVATQAHIDD 170 Query: 161 ENY----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + I D + LQP+ T LA+ C + WRLS+QTHK++ I Sbjct: 171 LDCLLKGISLDEKTICLQPISQK--SRATELAMRVCIER-NWRLSIQTHKYLEI 221 >gi|172035924|ref|YP_001802425.1| hypothetical protein cce_1008 [Cyanothece sp. ATCC 51142] gi|171697378|gb|ACB50359.1| hypothetical protein cce_1008 [Cyanothece sp. ATCC 51142] Length = 213 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 98/220 (44%), Gaps = 37/220 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG G A F R +GC++ C +CD + Sbjct: 19 YPIVEIFHSLQGEGTWTGMSAFFIRLAGCDV-----------HCPWCDQK----ESWTSK 63 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 Y + L E V+TGGEPL+ PL +AL K G + +ET+G Sbjct: 64 IYPQQSIKTLAEA---AKAANPAMVVITGGEPLMYDLFPLTKALKKLGLRVHLETSGAYP 120 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN------VSPENYIGFDFERFSLQPMD 177 DW+ +SPK K+ ++PQVN + E++ + + + P Sbjct: 121 FSGQFDWVTLSPKP---FKVPHES----IYPQVNELKVVITNQEDFHWAEEQEKKVPPQA 173 Query: 178 GPFLE------ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +L+ E+ +L Y + P+WR+S+Q HKF+G+R Sbjct: 174 LKYLQPEWNYPESQSLIFDYIRKAPQWRMSLQIHKFLGVR 213 >gi|16330304|ref|NP_441032.1| hypothetical protein sll2011 [Synechocystis sp. PCC 6803] gi|1652793|dbj|BAA17712.1| sll2011 [Synechocystis sp. PCC 6803] Length = 208 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 37/220 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I E F +LQGEG AG A F R GC++ C +CD + T Sbjct: 14 YPIAETFHSLQGEGAWAGGNAFFIRLGGCDV-----------HCPWCDQ-----KETWPT 57 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 +++ Q + +Q +T + + V+TGGEPL+ PL + L +G + +ET+G Sbjct: 58 QHHPRQTVTELVQQAVTAKPS--FVVITGGEPLMHDLQPLCKTLKNQGLRLHLETSGAYP 115 Query: 124 PPQGIDWICVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177 DWI +SPK K+ ELK++ Q E++ + E + P Sbjct: 116 LTGQFDWITLSPKP---YKLPQAAIYPLANELKVIISQ----DEDFDWAEMEARKISPGT 168 Query: 178 GPFLE-----ENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211 +L+ E N I +Y + +WRLS+QTHK++G+R Sbjct: 169 PLYLQAEWETEAMNEKIFAYILTHSQWRLSLQTHKYLGVR 208 >gi|152979671|ref|YP_001345300.1| radical SAM domain-containing protein [Actinobacillus succinogenes 130Z] gi|150841394|gb|ABR75365.1| Radical SAM domain protein [Actinobacillus succinogenes 130Z] Length = 208 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 102/223 (45%), Gaps = 41/223 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G A+F RF CNL C +CDT + Sbjct: 10 YPIVEIFESLQGEGANTGMPAIFIRFGKCNL-----------ACPWCDTPY--------- 49 Query: 64 RYNVDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 ++ A L Q I + + ++TGGEP +Q + L++ L + G+ +A+ETNG Sbjct: 50 ----NEFAALTFSQIIQKVRSFSAKNIIITGGEPTIQPRLSLLLEQLKQEGYFLAIETNG 105 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF--------DFERFS 172 P ID+I VSPK G + + + V+ EN + F + Sbjct: 106 LKTVPSQIDYIAVSPK-GLYWEKYHSRCISFAHEVRIVADENVLKFCAFIEDKIKANHYY 164 Query: 173 LQP--MDGPF-LEENTNL--AISYCFQNPKWRLSVQTHKFIGI 210 L P DG L E L ++ PKW+LS+QTHK IGI Sbjct: 165 LSPCETDGKMNLYETVTLLGQLNQRANRPKWQLSLQTHKLIGI 207 >gi|146298250|ref|YP_001192841.1| radical SAM domain-containing protein [Flavobacterium johnsoniae UW101] gi|146152668|gb|ABQ03522.1| Radical SAM domain protein [Flavobacterium johnsoniae UW101] Length = 210 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 95/221 (42%), Gaps = 39/221 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + E F T+QGEG H G A F R GC++ C +CD ++ + Sbjct: 15 MLPLMEEFYTIQGEGFHTGTAAYFIRIGGCDV-----------GCHWCD-----VKESWN 58 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + D+I V+TGGEPL L Q L + ++ +ET+G Sbjct: 59 AELHPPTNIDIIVNN---ASSYANTVVVTGGEPLTWDMTLLTQQLKDKNLKVHIETSGAY 115 Query: 123 EPPQGIDWICVSPKA-----------GCDLKIKGGQELKLVFP--QVNVSPENYIGFDFE 169 DWIC+SPK +LK+ + +F Q + +N I F Sbjct: 116 PLSGTWDWICLSPKKNKLPTPDVYANAHELKVIIYNKHDFIFAEEQAELVNDNAILF--- 172 Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP + EE T L + Y NPKWR+S+QTHK++ I Sbjct: 173 ---LQP-EWSKKEEMTPLIVDYVMNNPKWRVSLQTHKYLNI 209 >gi|15602049|ref|NP_245121.1| hypothetical protein PM0184 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720404|gb|AAK02268.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 209 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 104/226 (46%), Gaps = 47/226 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y+I EIF +LQGEG + G ++F RF CNL C +CDT + Sbjct: 11 YAIVEIFESLQGEGFNTGMPSIFVRFGKCNL-----------ACPWCDTPY--------N 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 +Y L+ ++++ + ++TGGEP + + L+ AL G+ +A+ETNG Sbjct: 52 QYTTWTLSKIVQK---VRSFSAKNIIITGGEPTIVPKIGVLLDALKAEGYFLAIETNGLK 108 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--------DFE 169 P ID+I SPK K I E+++ V+ EN I F + Sbjct: 109 SIPNQIDYIATSPKRLYQHKYQQKCIPFAHEVRI------VADENVIAFCEQIEQQIRAD 162 Query: 170 RFSLQPM----DGPFLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210 + L P + LE T + ++ PKW+LS+QTHK IGI Sbjct: 163 HYYLSPCEVNGEMNLLETITQIGRLNQRVNKPKWQLSIQTHKLIGI 208 >gi|159904363|ref|YP_001551707.1| putative organic radical activating protein [Prochlorococcus marinus str. MIT 9211] gi|159889539|gb|ABX09753.1| possible organic radical activating enzyme [Prochlorococcus marinus str. MIT 9211] Length = 226 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 100/236 (42%), Gaps = 48/236 (20%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F ++QGEG HAGR A F R + CN+ C +CDT + + Sbjct: 7 VVESFHSIQGEGAHAGRSAFFIRLAQCNV-----------GCEWCDTK----ESWSSISH 51 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGFEIAVET 118 + L++E I K + V+TGGEPL PL A+ I +ET Sbjct: 52 PKKTIDSLVQETTIAKSKGASFLVITGGEPLHHNLNPLCNAIKNNINSCGDNAIPIHLET 111 Query: 119 NGTIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFP--------------QVNVSPE 161 +G DWI +SPK K ++ QE+K++ ++ Sbjct: 112 SGVHHMSGAPDWITLSPKRHFPPKEELLEACQEIKVIIHSKEDILFAEEMAHRSIHAKKN 171 Query: 162 NYIGFDFERFS-------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 Y + S LQP G + + LAI Y +NP+WRLS+QTHK++ I Sbjct: 172 AYKSRVSTKQSLIKPLLFLQPGWGHSMGQ--KLAIEYVIKNPQWRLSLQTHKWLAI 225 >gi|88859840|ref|ZP_01134479.1| queC protein [Pseudoalteromonas tunicata D2] gi|88817834|gb|EAR27650.1| queC protein [Pseudoalteromonas tunicata D2] Length = 221 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 112/234 (47%), Gaps = 40/234 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59 +Y I EIF T+QGE G ++F R GC + W +Q ++ DT V +Q Sbjct: 1 MYKINEIFETIQGEASFTGMPSIFVRLQGCPVGCAWCDTKQTWETS-----DTYKVDLQK 55 Query: 60 TKGGRYNVDQLADLIEEQ----WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115 T + + + AD+ Q ++ + ++ V+TGGEP + VPL + L+ G+ Sbjct: 56 TVEKKADSELWADVTVAQLLALFVEKGYQAKHIVITGGEPCMYDLVPLCEGLHAAGYGTQ 115 Query: 116 VETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENYI-- 164 VET+GT E P + W+ VSPK + ++GG LK + N ++ + ++ Sbjct: 116 VETSGTFEIKVPAE--TWVTVSPK----INMRGGYAVLKSAMQRANEIKHPIAMQRHVDE 169 Query: 165 --------GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 G + LQP+ + T LAI C + WRLSVQ HK++GI Sbjct: 170 LEQLMAECGVTPKLIYLQPISQK--AKATQLAIEVC-KAKNWRLSVQVHKYLGI 220 >gi|328950182|ref|YP_004367517.1| Radical SAM domain protein [Marinithermus hydrothermalis DSM 14884] gi|328450506|gb|AEB11407.1| Radical SAM domain protein [Marinithermus hydrothermalis DSM 14884] Length = 199 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 97/222 (43%), Gaps = 37/222 (16%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 K Y + E F ++QGEG G A F R +GC++ C FCDT Sbjct: 3 KGYPVVETFHSVQGEGHWTGTSAFFIRLAGCDV-----------GCWFCDTKESWDMSQH 51 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 R +VD L + E Q V+TGGEPL+ PL +AL G +ET+G Sbjct: 52 PWR-SVDAL--VAEAQ----AASPAIVVVTGGEPLMHDLTPLSRALRAAGLRAHLETSGA 104 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN------VSPENYIGFDFERFSLQP 175 DW+ +SPK K V+P V+ V+ + + + P Sbjct: 105 HPFSGAWDWVTLSPK-------KFRPPHPSVYPHVHELKVVVVNQSDLAWAETHAARVPP 157 Query: 176 MDGPFL------EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +L E++ L + Y Q+P+WR+S+QTHK +G+R Sbjct: 158 TALKYLQPEWSTEKSRQLILEYVLQHPEWRVSLQTHKVLGVR 199 >gi|114047413|ref|YP_737963.1| radical activating enzyme [Shewanella sp. MR-7] gi|113888855|gb|ABI42906.1| radical activating enzyme [Shewanella sp. MR-7] Length = 222 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 105/228 (46%), Gaps = 30/228 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQD-RLSAQCRFCDTDFVGIQG 59 Y + E+F T+QGEG G A+F R GC + W +Q L + + + + G Sbjct: 3 YPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDLLEENKVSPEQVITVDG 62 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + G R+ LIE G R+ V+TGGEP + L AL+ GF +ET+ Sbjct: 63 SVG-RWANHTAQSLIEAFNAKGYT-ARHVVITGGEPCMYDLNELTHALHAAGFATQIETS 120 Query: 120 GTIEPPQGID-WICVSPKAGCDLKIKGG-QELKLVFPQVN-----VSPENYI-------- 164 GT E D W+ VSPK + +KGG Q L + N ++ EN+I Sbjct: 121 GTFEVKCDADTWVTVSPK----INMKGGYQVLAQALIRANEIKHPIATENHIDELDELLK 176 Query: 165 GFDF--ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 G D + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 177 GIDVSAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221 >gi|126657071|ref|ZP_01728242.1| hypothetical protein CY0110_28234 [Cyanothece sp. CCY0110] gi|126621614|gb|EAZ92324.1| hypothetical protein CY0110_28234 [Cyanothece sp. CCY0110] Length = 213 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 95/225 (42%), Gaps = 41/225 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 +K Y I E F +LQGEG G A F R +GC++ C +CD + Sbjct: 16 LKTYPIVERFHSLQGEGTWTGMSAFFIRLAGCDV-----------HCPWCDQK----ESW 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 Y + L + V+TGGEPL+ PL + L + G + +ET+G Sbjct: 61 NSNLYPQQSIKTLTDA---AKAANPAMVVITGGEPLIHDLFPLTKGLKQLGLRVHLETSG 117 Query: 121 TIEPPQGIDWICVSPKA-----------GCDLKIKGGQELKLVFP--QVNVSPENYIGFD 167 DWI +SPK +LK+ E L + Q P I + Sbjct: 118 AYPLTGEFDWITLSPKPFKVPHETVYSQVNELKVIIANEADLNWAEKQEKKVPSQTIKY- 176 Query: 168 FERFSLQP-MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 LQP + P E+ +L Y NP+WR+S+Q HKF+G+R Sbjct: 177 -----LQPEWNSP---ESKSLIFDYILSNPQWRMSLQIHKFLGVR 213 >gi|116074183|ref|ZP_01471445.1| possible organic radical activating enzyme [Synechococcus sp. RS9916] gi|116069488|gb|EAU75240.1| possible organic radical activating enzyme [Synechococcus sp. RS9916] Length = 202 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 32/217 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F +LQGEG HAGR A F R +GCN+ C +CDT Q + + Sbjct: 7 VVETFHSLQGEGLHAGRSAFFIRLAGCNV-----------GCSWCDTKHSWPQSS----H 51 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTIEP 124 + + L E G+ + V+TGGEPL L A+ I +ET+G ++P Sbjct: 52 PLQSVDSLAAEAAAAGQAGAAFVVITGGEPLHHNLDGLTGAIRTACTLPIHIETSG-VDP 110 Query: 125 PQGI-DWICVSPKAGCDLK---IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 G DWI +SPK + ++ ELK+V V N + F S P Sbjct: 111 LSGTPDWITLSPKRHSPPRAEVLRACHELKVV-----VHEPNDLLFAEVAASQAPQASWL 165 Query: 181 L------EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 L E+ LAI+Y +P+WRLS+Q+HK++ +R Sbjct: 166 LQPGWQSEKGQQLAINYAQHHPRWRLSLQSHKWLQVR 202 >gi|120437087|ref|YP_862773.1| hypothetical protein GFO_2752 [Gramella forsetii KT0803] gi|117579237|emb|CAL67706.1| conserved hypothetical protein [Gramella forsetii KT0803] Length = 210 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 103/222 (46%), Gaps = 41/222 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + E F T+QGEG H G A F R GC++ C +CD + Sbjct: 15 MLPLMEEFYTIQGEGFHKGTAAYFIRIGGCDV-----------GCHWCDVK----ESWDA 59 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + ++ ++E K + V+TGGEPL L +L K+G +I +ET+G Sbjct: 60 EVHPPTRIGQIVE----NAVKYSKTIVITGGEPLTWDMTELTGSLKKKGCDIHIETSGAY 115 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----VSPENYIGFDFERFS----- 172 + DWIC+SPK KIK ++ ++P N V ++ + F E+ + Sbjct: 116 DLTGTWDWICLSPK-----KIKLPKD--KIYPVANELKVIVFNKHDLKFAEEQAAKVGEK 168 Query: 173 ----LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP + EE L + Y NPKW++S+QTHK++ I Sbjct: 169 CVLYLQP-EWSKREEMIPLIVDYVMANPKWKVSLQTHKYLNI 209 >gi|289581999|ref|YP_003480465.1| radical SAM protein [Natrialba magadii ATCC 43099] gi|289531552|gb|ADD05903.1| Radical SAM domain protein [Natrialba magadii ATCC 43099] Length = 280 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/132 (40%), Positives = 70/132 (53%), Gaps = 19/132 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F +LQGEG AG +VF R SGCNL +C FCD+ + T Sbjct: 26 INELFYSLQGEGVLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPTHAW-M 73 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEP 124 +D + D IE + + VLTGGEPLL V L++AL++RG+ VETNGTI Sbjct: 74 ELDAILDEIESH------DADHVVLTGGEPLLHDASVALLEALDERGYHTTVETNGTIYR 127 Query: 125 PQGIDWICVSPK 136 ID +SPK Sbjct: 128 DAPIDLASISPK 139 >gi|260914430|ref|ZP_05920899.1| radical SAM domain protein [Pasteurella dagmatis ATCC 43325] gi|260631531|gb|EEX49713.1| radical SAM domain protein [Pasteurella dagmatis ATCC 43325] Length = 209 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 106/222 (47%), Gaps = 39/222 (17%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y+I EIF +LQGEG + G ++F RF CNL C +CDT++ Sbjct: 11 YNIVEIFESLQGEGFNTGMPSIFVRFGKCNL-----------ACPWCDTNY--------N 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 +Y L+ ++++ + ++TGGEP + + L+ L G+ +A+ETNG Sbjct: 52 QYTTWSLSQILQK---VRSFSAKNIIITGGEPTIVPKIEYLLDTLKAEGYFLAIETNGLK 108 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS----PENYIGFDFERFSL 173 P ID+I SPK K I E+++V + S E I D R+ L Sbjct: 109 TIPSQIDYIATSPKRLYQHKYQQKCIPFANEVRIVADEDVFSFCEQIEQQIHAD--RYYL 166 Query: 174 QP--MDGP--FLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210 P +DG LE T + ++ PKW+LS+QTHK IGI Sbjct: 167 SPCEIDGEMNLLETITQIGLLNQRVNKPKWQLSIQTHKLIGI 208 >gi|170076908|ref|YP_001733546.1| radical SAM domain-containing protein [Synechococcus sp. PCC 7002] gi|169884577|gb|ACA98290.1| Radical SAM domain protein [Synechococcus sp. PCC 7002] Length = 218 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 100/217 (46%), Gaps = 31/217 (14%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I E F ++QGEG G A F R +GC++ C +CDT + + Sbjct: 24 YPIVETFHSIQGEGFWCGTAAFFIRLAGCDV-----------GCPWCDTK-ISWNPKRHP 71 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 + +V QL + ++ + + V+TGGEPL+ PL L + G + +ET+G Sbjct: 72 QVSVGQLKEQVQT------AQPKIIVITGGEPLMHDLYPLTTGLKETGIPLHLETSGAHP 125 Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVN-----VSPENYIGFDFERFSLQP 175 DW+ +SP KA ELK+V Q S I + ++ LQP Sbjct: 126 LNGHFDWLTLSPKPFKAPLPEIYDHVSELKVVIDQATDFQWAESQVQKIAANIPKY-LQP 184 Query: 176 M-DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + P + +L Y +P+WRL +QTHKF+G+R Sbjct: 185 QWENP---ASQSLIFDYILAHPEWRLGLQTHKFLGVR 218 >gi|260435246|ref|ZP_05789216.1| organic radical activating enzyme [Synechococcus sp. WH 8109] gi|260413120|gb|EEX06416.1| organic radical activating enzyme [Synechococcus sp. WH 8109] Length = 205 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 108/222 (48%), Gaps = 41/222 (18%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F +LQGEG HAGR A F R +GC + C +CDT + Sbjct: 9 VVETFHSLQGEGRHAGRSAFFIRLAGCTV-----------GCSWCDTK----HSWPSQGH 53 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTIEP 124 + L + E + V+TGGEPL PL QAL+ R G + +ET+G ++P Sbjct: 54 AEQPIGALASAAQMAAEAGASFVVITGGEPLHHNLQPLTQALDARCGLPLHLETSG-VDP 112 Query: 125 PQG-IDWICVSPKAGCDLK---IKGGQELKLVFPQVNVSPENYIGF----------DFER 170 G DWI +SPK + ++ ELK+V PE+ I F D ER Sbjct: 113 LTGRFDWITLSPKRHRPPRQELLQACHELKVVV----HGPED-ISFAAAMASQCEDDTER 167 Query: 171 FSLQP-MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 LQP + EE LA+ + ++P+WRLS+Q+HK++GIR Sbjct: 168 L-LQPGWESSIGEE---LALDHVRKHPQWRLSLQSHKWLGIR 205 >gi|167751865|ref|ZP_02423992.1| hypothetical protein ALIPUT_00107 [Alistipes putredinis DSM 17216] gi|167660106|gb|EDS04236.1| hypothetical protein ALIPUT_00107 [Alistipes putredinis DSM 17216] Length = 211 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 34/214 (15%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 E F T+QGEG H G+ A F R GC++ CR+CD + Y Sbjct: 20 EDFYTIQGEGFHTGKPAYFIRLGGCDV-----------GCRWCDAKYTW----NPKLYPP 64 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQG 127 +++++ + + V+TGGEPLL PL AL G +I +ET+G+ Sbjct: 65 TDISEVVRR---ATSCQAQAIVITGGEPLLYPLGPLTSALKGHGLKIFLETSGSHPFSGY 121 Query: 128 IDWICVSPK-----------AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176 DW+C+SPK +LK+ +E L + + N +G + + F LQP Sbjct: 122 FDWVCLSPKRQQPPLPEAFWRAHELKVIVEREADLQWAERNA---EQVGRECKLF-LQP- 176 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + EE L + Y +P W +S+QTHK++ I Sbjct: 177 EWSVSEEIMPLLVEYVKAHPAWNISIQTHKYMHI 210 >gi|113970395|ref|YP_734188.1| radical activating enzyme [Shewanella sp. MR-4] gi|113885079|gb|ABI39131.1| radical activating enzyme [Shewanella sp. MR-4] Length = 222 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 106/234 (45%), Gaps = 42/234 (17%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL----------WSGREQDRLSAQCRFCDTD 53 Y + E+F T+QGEG G A+F R GC + W E++++S Q Sbjct: 3 YPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWGLLEENKVSPQ------Q 56 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + + G+ GR+ LIE G R+ V+TGGEP + L L+ GF Sbjct: 57 VITVDGSV-GRWANHTAQSLIEAFNAKG-YTARHVVITGGEPCMYDLNELTHTLHAAGFA 114 Query: 114 IAVETNGTIEPPQGID-WICVSPKAGCDLKIKGG-QELKLVFPQVN-----VSPENYI-- 164 +ET+GT E D W+ VSPK + +KGG Q L + N ++ EN+I Sbjct: 115 TQIETSGTFEVKCDADTWVTVSPK----VNMKGGYQVLAQALTRANEIKHPIATENHIDE 170 Query: 165 ------GFD--FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 G D + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 171 LDELLKGIDVSVKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221 >gi|300772841|ref|ZP_07082710.1| radical SAM domain protein [Sphingobacterium spiritivorum ATCC 33861] gi|300759012|gb|EFK55839.1| radical SAM domain protein [Sphingobacterium spiritivorum ATCC 33861] Length = 207 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 93/212 (43%), Gaps = 26/212 (12%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F T+QGEG H G+ A F R GC++ C +CD ++ + Sbjct: 14 LMEEFYTIQGEGYHTGKAAYFIRLGGCDV-----------GCHWCD-----VKESWDAEL 57 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 + AD I E + V+TGGEPL+ L L G + +ET+G Sbjct: 58 HPLTAADTIVEH--ANVHPSKTVVVTGGEPLIYNLDYLTSQLQNAGIQTFLETSGAYPLS 115 Query: 126 QGIDWICVSPK----AGCDLKIKGGQELKLVFPQVN---VSPENYIGFDFERFSLQPMDG 178 DWIC+SPK D+ G+ +VF + + + D + LQP + Sbjct: 116 GHWDWICLSPKKFKAPRPDVLANAGELKVIVFNKSDFQWAEEHARLVSDTCKLYLQP-EW 174 Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E T L I Y NPKW +S+QTHK++ I Sbjct: 175 SKAAEMTPLIIDYVMANPKWEISLQTHKYLNI 206 >gi|91205678|ref|YP_538033.1| organic radical activating protein [Rickettsia bellii RML369-C] gi|157826864|ref|YP_001495928.1| organic radical activating protein [Rickettsia bellii OSU 85-389] gi|91069222|gb|ABE04944.1| Organic radical activating enzymes [Rickettsia bellii RML369-C] gi|157802168|gb|ABV78891.1| Organic radical activating enzymes [Rickettsia bellii OSU 85-389] Length = 225 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 106/224 (47%), Gaps = 44/224 (19%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68 IF T+QGEG G A+F R GCNL C FCDT+F + K +D Sbjct: 23 IFKTIQGEGIFVGVPAIFIRLGGCNLA-----------CDFCDTEFENFETIK-----ID 66 Query: 69 QLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI--EP 124 + + + + E + V+TGGEP+ Q L Q L ++ F++ +ETNGT+ Sbjct: 67 DILSKVNLLALNSKNEQSVKLVVITGGEPMRQPIELLCQKLLEQDFKVQIETNGTLYRSL 126 Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL----------- 173 P + IC SPKAG K ++L P+++ + + I + +SL Sbjct: 127 PDEVSIIC-SPKAGKKGYSKIREDL---LPKIS-AVKFIIAKNILEYSLIPEIGQTAYNI 181 Query: 174 ----QPM---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 QPM D +EN LA+ ++ RLSVQTHKFIGI Sbjct: 182 PVFVQPMDQNDQKLNKENNELAVKLALES-GARLSVQTHKFIGI 224 >gi|165976520|ref|YP_001652113.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876621|gb|ABY69669.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 210 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 101/222 (45%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + I EIF +LQGEG + G +F R CNL C +CDT++ Sbjct: 11 FPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY--------N 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 Y LA ++E ++ ++TGGEP + ++ L+ G+ +A+ETNG Sbjct: 52 EYEKWSLAKILER---VKSYSAKHIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNGLK 108 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSP-----ENYIGFDFERFS 172 P+ ID+I SPK K I E+++V + +V E I + S Sbjct: 109 AVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVVDKGDVQSFCEQIETQITAEHYYLS 168 Query: 173 LQPMDGP--FLEENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211 +DG LE T L I + PKW+LS+QTHK +GI Sbjct: 169 PCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGIE 210 >gi|322831395|ref|YP_004211422.1| Radical SAM domain protein [Rahnella sp. Y9602] gi|321166596|gb|ADW72295.1| Radical SAM domain protein [Rahnella sp. Y9602] Length = 223 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 104/227 (45%), Gaps = 27/227 (11%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60 Y I E+F TLQGEG G A+F R GC + W + R D + ++ Sbjct: 3 YPINEMFETLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWDKIADREVDMQRILVKTE 62 Query: 61 KG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G +QL ++I +Q T R+ V+TGGEP + L L K GF +E Sbjct: 63 ESDAWGNATSEQLLEVIAQQGYTA----RHVVITGGEPCIYDLTELTSLLEKSGFSCQIE 118 Query: 118 TNGTIEPPQGID-WICVSPKA----GCDL---KIKGGQELKL-VFPQVNVSP-----ENY 163 T+GT E ++ W+ VSPK G D+ +K E+K V Q ++ E Sbjct: 119 TSGTHEVRCSVNTWVTVSPKVNMRGGYDILPQALKRADEVKHPVARQRDIDALDALLETL 178 Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ EE T L I+ C WRLS+QTHK++ I Sbjct: 179 TDSKARIIALQPISQK--EEATRLCIATCIAR-NWRLSMQTHKYLNI 222 >gi|311746196|ref|ZP_07719981.1| radical activating enzyme [Algoriphagus sp. PR1] gi|126576423|gb|EAZ80701.1| radical activating enzyme [Algoriphagus sp. PR1] Length = 208 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 99/212 (46%), Gaps = 26/212 (12%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F T+QGEG G A F R GC++ C +CD + + G++ Sbjct: 15 LMEAFYTIQGEGRFTGHPAYFIRLGGCDV-----------GCVWCDVK----ESWEAGKW 59 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 + + +++ E + GR V+TGGEPL+ PL L ++GF +ET+G Sbjct: 60 PILPIEEIVAE---AVKYPGRLVVITGGEPLMYDLGPLTSLLKEKGFTTNIETSGAHPFS 116 Query: 126 QGIDWICVSPKAGCDLK---IKGGQELKLVF---PQVNVSPENYIGFDFE-RFSLQPMDG 178 DW+C SPK K ELK+V + E+ + + LQP + Sbjct: 117 GDFDWVCFSPKKFKKPHPSIYKVANELKVVVFHNSDFAFAEEHALKVNENCELRLQP-EW 175 Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E+ T L I+Y +P W++S+QTHKF+ I Sbjct: 176 SKSEKFTPLIINYSKYHPNWKISLQTHKFMDI 207 >gi|313157136|gb|EFR56566.1| radical SAM domain protein [Alistipes sp. HGB5] Length = 211 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 99/223 (44%), Gaps = 40/223 (17%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 +L + E F T+QGEG HAG+ A F R GC++ CR+CD + Sbjct: 14 RLLPLVEDFYTIQGEGFHAGKPAYFIRLGGCDV-----------GCRWCDAKYTW----N 58 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 Y + +I+ + V+TGGEPLL L + L+++G +I +ET+GT Sbjct: 59 PKLYPPTDVRTVIDRALAC---PAQAIVITGGEPLLYPLGVLTETLHEKGLQIFLETSGT 115 Query: 122 IEPPQGIDWICVSPK---AGCDLKIKGGQELKLVFPQ-----------VNVSPENYIGFD 167 DW+C+SPK D ++ ELK++ V PE + Sbjct: 116 HPFSGYFDWVCLSPKRQQPPLDEALERAHELKVIVESESDFEWAERNAARVRPECML--- 172 Query: 168 FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP + E + Y +PKW +S+QTHK++ I Sbjct: 173 ----YLQP-EWSVAERVMPAMVEYAKAHPKWNISIQTHKYMHI 210 >gi|307132359|ref|YP_003884375.1| hypothetical protein Dda3937_00204 [Dickeya dadantii 3937] gi|306529888|gb|ADM99818.1| conserved protein [Dickeya dadantii 3937] Length = 223 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 109/236 (46%), Gaps = 43/236 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-------- 54 LY I E+F TLQGEG G AVF R GC + C +CDT Sbjct: 2 LYPINEMFQTLQGEGFFTGVPAVFIRLQGCPV-----------GCSWCDTKHTWEKRPER 50 Query: 55 ------VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 V ++ + ++ DLI++ G R+ V+TGGEP + PL QAL Sbjct: 51 QISLAEVLVKSGESDAWSGSSAGDLIQQIARQGYT-ARHVVITGGEPCIHDLTPLTQALE 109 Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPK-------AGCDLKIKGGQELKL-VFPQVNVS 159 ++GF +ET+GT E + W+ VSPK A D ++ E+K V + ++ Sbjct: 110 QQGFSTQIETSGTHEVRCSPNCWVTVSPKVNMRGGLAVLDQALQRANEIKHPVARERDIE 169 Query: 160 PENYI--GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + D ++ +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 170 ALDALLARLDDDKARVVALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|304413345|ref|ZP_07394818.1| radical SAM superfamily domain-containing hypothetical protein [Candidatus Regiella insecticola LSR1] gi|304284188|gb|EFL92581.1| radical SAM superfamily domain-containing hypothetical protein [Candidatus Regiella insecticola LSR1] Length = 265 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 104/243 (42%), Gaps = 54/243 (22%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54 Y I EIF +LQGEG A+F R GC C +CDT Sbjct: 42 YPINEIFQSLQGEGYFTNVPAIFIRLQGC-----------PVACSWCDTKHTWDIKKDKE 90 Query: 55 VGIQGTKGGRYNVDQLADLIEEQWITGEKE---GRYCVLTGGEPLLQVDVPLIQALNKRG 111 + IQG D ++ E+Q + KE R+ V+TGGEP L PL L + G Sbjct: 91 IDIQGITVKTVAKDTWSNANEQQLVAICKEKYQARHVVITGGEPCLYDLQPLTSLLEENG 150 Query: 112 FEIAVETNGTIEPPQ--GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169 + +ET+GT P + W+ VSPK G +KGG LKL+ + + E E Sbjct: 151 YRCQIETSGT-HPVRCSTASWVTVSPKIG----MKGG--LKLLDQALQRADEIKHPVARE 203 Query: 170 R-------------------FSLQPMDG--PFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 R +LQP+ EE T L I C ++ WRLSVQ HK++ Sbjct: 204 RDIERLNNLLDKLNDGKKPVIALQPIRKTEKESEEATKLCIETCIKH-NWRLSVQMHKYL 262 Query: 209 GIR 211 IR Sbjct: 263 KIR 265 >gi|284036696|ref|YP_003386626.1| organic radical activating enzyme [Spirosoma linguale DSM 74] gi|283815989|gb|ADB37827.1| organic radical activating enzyme [Spirosoma linguale DSM 74] Length = 216 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 37/218 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F T+QGEG H GR A F R GC++ C +CD ++ + Sbjct: 22 VMEAFYTIQGEGAHTGRAAYFIRLGGCDV-----------GCHWCD-----VKESWDADA 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 + Q D + + + + GR V+TGGEPL+ L +AL GF+ +ET+G + Sbjct: 66 HPKQSIDALVKGAL--QYPGRLAVITGGEPLMHDLTALTEALQVAGFKTNIETSGVCQTV 123 Query: 126 QGI-DWICVSPKAGCDLK---IKGGQELK-LVFPQVNVS-PENYIGFDFERFSLQPMDGP 179 G DWIC SPK + ELK +++ Q + + E+++ + L+P Sbjct: 124 TGSWDWICFSPKKFKKPNPAIYEKADELKVIIYNQSDFAFAESFVPY------LRPDCKL 177 Query: 180 FLE-------ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 FL+ E + Y +P+W++S+QTHKF+ I Sbjct: 178 FLQSEWGRSNEMLPRIVDYVKDHPQWQISLQTHKFLNI 215 >gi|227537400|ref|ZP_03967449.1| radical SAM domain protein [Sphingobacterium spiritivorum ATCC 33300] gi|227242778|gb|EEI92793.1| radical SAM domain protein [Sphingobacterium spiritivorum ATCC 33300] Length = 207 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 93/212 (43%), Gaps = 26/212 (12%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F T+QGEG H G+ A F R GC++ C +CD ++ + Sbjct: 14 LMEEFYTIQGEGYHTGKAAYFIRLGGCDV-----------GCHWCD-----VKESWDAEL 57 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 + AD I E + V+TGGEPL+ L L G + +ET+G Sbjct: 58 HPLTAADTIVEH--ANVHPSKTVVVTGGEPLIYNLDYLTSQLQNAGIQTFLETSGAYPLS 115 Query: 126 QGIDWICVSPK----AGCDLKIKGGQELKLVFPQVN---VSPENYIGFDFERFSLQPMDG 178 DWIC+SPK D+ G+ +VF + + + D + LQP + Sbjct: 116 GHWDWICLSPKKFKAPRPDVLANAGELKVIVFNKSDFQWAEEHARLVNDTCKLYLQP-EW 174 Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E T L I Y NPKW +S+QTHK++ I Sbjct: 175 SKAAEMTPLIIDYVMANPKWEISLQTHKYLNI 206 >gi|157964748|ref|YP_001499572.1| organic radical activating protein [Rickettsia massiliae MTU5] gi|157844524|gb|ABV85025.1| Organic radical activating enzyme [Rickettsia massiliae MTU5] Length = 231 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 107/227 (47%), Gaps = 44/227 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 ++ IF T+QGEG G A+F R GCNL C FCDT+F Sbjct: 26 VQSIFKTIQGEGIFVGCPAIFIRLGGCNLA-----------CNFCDTEFEDFD-----LV 69 Query: 66 NVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122 ++DQ+ + +E + EK V+TGGEP+ Q L Q L R ++ +ETNGT+ Sbjct: 70 DIDQILNKVESLALNSKNEKSINLVVITGGEPMRQPIELLCQKLLDRDVKVQIETNGTLY 129 Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN----VSPENYI-----------GF 166 PQ + IC SPKAG K +EL P+++ + +N + + Sbjct: 130 RSLPQEVSIIC-SPKAGKTGYSKIREEL---LPKISAVKFIVAKNILEYSLIPEVGQTSY 185 Query: 167 DFERFSLQPMDGP---FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + F +QPMD EN LA+ ++ RLS+QTHKF+ I Sbjct: 186 NIPVF-IQPMDQNDQRLNGENNELAVKLALES-GARLSLQTHKFLNI 230 >gi|67458743|ref|YP_246367.1| organic radical activating protein [Rickettsia felis URRWXCal2] gi|67004276|gb|AAY61202.1| Organic radical activating enzymes [Rickettsia felis URRWXCal2] Length = 225 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 109/228 (47%), Gaps = 44/228 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 ++ IF T+QGEG G A+F R GCNL C FCDT+F + Sbjct: 20 VQSIFKTIQGEGIFVGCPAIFIRLGGCNLA-----------CNFCDTEFEDFK-----LV 63 Query: 66 NVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122 ++ ++ + +E + EK V+TGGEP+ Q L Q L + F+I +ETNGT+ Sbjct: 64 DIAEILNKVESLALNSKNEKSINLVVITGGEPMRQPIELLCQKLLDQDFKIQIETNGTLY 123 Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL-------- 173 P + IC SPKAG + K ++L P+++ + + I + +SL Sbjct: 124 RSLPNEVSIIC-SPKAGKNGYSKIREDL---LPKIS-AVKFIIAKNILEYSLIPEVGQTS 178 Query: 174 -------QPM---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 QPM D +EN LA+ ++ RLS+QTHKF+GI Sbjct: 179 YNIPVFVQPMDQNDQSLNDENNELAVKLALES-GARLSLQTHKFLGIE 225 >gi|261492302|ref|ZP_05988864.1| NrdG protein [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495367|ref|ZP_05991816.1| NrdG protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308970|gb|EEY10224.1| NrdG protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311985|gb|EEY13126.1| NrdG protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 208 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 108/220 (49%), Gaps = 35/220 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + I EIF +LQGEG + G A+F RF CNL C +CDT++ Sbjct: 10 FPIVEIFESLQGEGFNTGMPAIFVRFGKCNL-----------TCPWCDTNY--------N 50 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ L+D++ + + ++TGGEP +Q ++ L++ K G+ +A+ETNG Sbjct: 51 QFEQWTLSDILAK---VRSYSAKNVIITGGEPTIQPNLSLLLEQFKKEGYFLAIETNGLK 107 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFP-QVNVSPENYIG-FDFERFSLQP 175 E P ID+I SPK K I+ E+++V +V E E + L P Sbjct: 108 EVPAQIDYIATSPKRMYQEKYQRRCIEFANEVRIVVDGEVQGFCEQIESQIKAEHYYLSP 167 Query: 176 --MDGP--FLEENTNLAISYCFQN-PKWRLSVQTHKFIGI 210 ++G LE T + + N PKW+LS+QTHK +GI Sbjct: 168 CEVEGKMNLLETITQIGLLNQRPNKPKWQLSIQTHKIVGI 207 >gi|71282067|ref|YP_269647.1| hypothetical protein CPS_2947 [Colwellia psychrerythraea 34H] gi|71147807|gb|AAZ28280.1| conserved hypothetical protein [Colwellia psychrerythraea 34H] Length = 226 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 109/231 (47%), Gaps = 34/231 (14%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQD-RLSAQCRFCDTDFVGIQG 59 Y I EIF TLQGEG G+ ++F R GC + W + +S + + V + Sbjct: 7 YKINEIFETLQGEGSFTGQPSIFIRLQGCPVGCSWCDTKHTWEVSLEQEVAQNNIVSKKS 66 Query: 60 TKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 G + + QL +L +++ + ++ V+TGGEP + PL Q G+ VE Sbjct: 67 ENDSWGIFTIVQLKEL----FLSEGYQAKHIVITGGEPCMYDLKPLCQNFEALGYSCQVE 122 Query: 118 TNGTIEPPQGID-WICVSPKAGCDLKIKGG-QELKLVFPQVN-----VSPENYIG----- 165 T+GT E W+ VSPK + +KGG + LK + + V+ E +I Sbjct: 123 TSGTFEIQVSKKCWVTVSPK----VNMKGGFKVLKSALLRADEIKHPVATEQHIDDLKAL 178 Query: 166 -----FDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + ++ +QP+ + T LAI C +N WRLSVQ HK+IGI Sbjct: 179 LNEHEIENKQIYIQPISQK--KRATELAIRSCIEN-NWRLSVQVHKYIGIE 226 >gi|318040803|ref|ZP_07972759.1| putative organic radical activating protein [Synechococcus sp. CB0101] Length = 216 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 94/221 (42%), Gaps = 33/221 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F +LQGEG H+GR A F R GC S C +CDT Q + Sbjct: 14 VVETFHSLQGEGLHSGRSAWFIRLGGC-----------SVGCSWCDTKHSWPQDV----H 58 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 + L L +E + V+TGGEPL PL +AL G + +ET+G Sbjct: 59 PLQSLEALQQEAQSAVANGAAFVVITGGEPLEHHLAPLCEALQPFGVPLHLETSGVGAFT 118 Query: 126 QGIDWICVSPKAG---CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL------QPM 176 WI +SPK + ELK+V V+ + + SL QP Sbjct: 119 GAFAWITLSPKPHRPPTPEVLAACHELKVV---VHEAADLAFAEAMAAASLNGRNNDQPA 175 Query: 177 DGPFLEE------NTNLAISYCFQNPKWRLSVQTHKFIGIR 211 L+ LAI Y +P WRLS+Q+HK++G+R Sbjct: 176 PALLLQPGWQSTTGQQLAIDYVRSHPSWRLSLQSHKWLGVR 216 >gi|261822768|ref|YP_003260874.1| hypothetical protein Pecwa_3531 [Pectobacterium wasabiae WPP163] gi|261606781|gb|ACX89267.1| conserved hypothetical protein [Pectobacterium wasabiae WPP163] Length = 223 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 110/229 (48%), Gaps = 31/229 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58 Y I E+F TLQGEG G AVF R GC + W + D+L+ + D V + Sbjct: 3 YPINEMFQTLQGEGYFTGVPAVFVRLQGCPVGCSWCDTKHTWDKLAERETSLDLVLVKTE 62 Query: 59 GTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G + D + L+ +Q T R+ V+TGGEP + PL L K+GF +E Sbjct: 63 ESDAWGAASADDILALMVQQGYTA----RHIVITGGEPCIHDLAPLTLQLEKQGFSCQIE 118 Query: 118 TNGTIE---PPQGIDWICVSPKAG-------CDLKIKGGQELKL-VFPQVNVSPENYI-- 164 T+GT + P+ W+ VSPK D ++ E+K V + ++ + + Sbjct: 119 TSGTHDVRCSPKT--WVTVSPKVNMRGGMKVLDQALQRADEIKHPVARERDIEALDALLA 176 Query: 165 GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 D ++ +LQP+ E+ T L I+ C WRLS+QTHK++ I Sbjct: 177 RLDDDKPRIVALQPISQK--EDATKLCIATCIAR-NWRLSMQTHKYLNI 222 >gi|54309500|ref|YP_130520.1| putative organic radical activating enzyme [Photobacterium profundum SS9] gi|46913936|emb|CAG20718.1| putative organic radical activating enzymes [Photobacterium profundum SS9] Length = 222 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 33/231 (14%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCD-TDFVGIQ 58 +Y I E+F T+QGEG G A+F R C + W +Q + + D + + Sbjct: 1 MYKINEVFETIQGEGTFTGVPAIFVRLQVCPVGCSWCDTKQTWDAEPTDYASLNDIMAKK 60 Query: 59 GTKGGRYNVDQ--LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 G N+D + L+++Q T R+ V+TGGEP + VPL AL GF + Sbjct: 61 GDSPLWTNIDAQGIVTLLQDQGYTA----RHVVITGGEPCIYDLVPLTAALETAGFNCQI 116 Query: 117 ETNGTIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNVSPE--NYIGFDFERFSL 173 ET+GT E + W+ VSP KI +L ++ ++ + E + +G + L Sbjct: 117 ETSGTSEILATENTWVTVSP------KINMKAKLPVLASALSRADEIKHPVGTSKDIKQL 170 Query: 174 QPM-DGPFLEENTNLAISYCFQNPK-------------WRLSVQTHKFIGI 210 + DG L++N +A+ Q P+ WRLS+QTHK++ I Sbjct: 171 DALIDGVILKQNVTIALQPISQKPRATDLCIETCIKRNWRLSIQTHKYLAI 221 >gi|268591373|ref|ZP_06125594.1| radical SAM domain protein [Providencia rettgeri DSM 1131] gi|291313351|gb|EFE53804.1| radical SAM domain protein [Providencia rettgeri DSM 1131] Length = 223 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 110/236 (46%), Gaps = 43/236 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSG------REQDRLSAQCRFCDTDF 54 Y I EIF T+QGEG G AVF R GC + W +EQD+ S D Sbjct: 3 YPINEIFQTIQGEGVFTGVPAVFIRLQGCPVGCSWCDTKQTWEKEQDKEST---LGDIAL 59 Query: 55 VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114 I + + L L++E+ + + + V+TGGEP + PL L + G++ Sbjct: 60 KTIDSDAWAMADGEALVQLMKEKHFSAQ----HIVITGGEPCIYDLQPLTGILEQHGYQC 115 Query: 115 AVETNGTIEPPQGID--WICVSPKAGCDLKIKGGQELKLVFPQVN--------VSPENYI 164 +ET+GT P Q D W+ VSPK G +KGG L+++ VN V+ E I Sbjct: 116 QIETSGTY-PIQCTDNTWVTVSPKVG----MKGG--LQVISQAVNRANEIKHPVAREKDI 168 Query: 165 GFDFERFSLQPMDGPFL---------EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + +L+ ++ P + T L I C Q WRLS+QTHK++ I+ Sbjct: 169 EALEKILALRTVETPPVVALQPISQKAAATKLCIETCIQR-NWRLSIQTHKYLDIQ 223 >gi|212702071|ref|ZP_03310199.1| hypothetical protein DESPIG_00073 [Desulfovibrio piger ATCC 29098] gi|212674512|gb|EEB34995.1| hypothetical protein DESPIG_00073 [Desulfovibrio piger ATCC 29098] Length = 225 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 104/240 (43%), Gaps = 44/240 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M+ ++ E F+TLQGE AG AVF RF GC + + +A+ DF ++ Sbjct: 1 MRTLAVNEFFVTLQGEASFAGTPAVFVRFQGCPVACPWCDTQYAARLDGATLDFAAVRAK 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 +G AD+ E + +E R+ VLTGGEP L L GF + +ET Sbjct: 61 QGPGAG---YADVEPEALLAAIREAGPRHVVLTGGEPCRHDLTELTSRLVTEGFRVQIET 117 Query: 119 NGTIEPPQGID-WICVSPKAGCDLKIKGGQELK---------LVFPQVNVSPENYIGFDF 168 +GT+ D W+ +SPK L + GG E++ + FP + D Sbjct: 118 SGTMPIRCHADVWVTLSPK----LDMPGGLEVRQDAWERAGEIKFPVDTAA-------DL 166 Query: 169 ERF------SLQPMDGPFLE-----------ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 RF + Q P E E T L + F + +WR+SVQ HK++ +R Sbjct: 167 ARFEQALAVARQAASRPLTELVWLQPVSQGKEATRLCVEAAFAH-QWRVSVQVHKYLDLR 225 >gi|89890614|ref|ZP_01202124.1| organic radical activating enzyme [Flavobacteria bacterium BBFL7] gi|89517529|gb|EAS20186.1| organic radical activating enzyme [Flavobacteria bacterium BBFL7] Length = 219 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 37/220 (16%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + E F T+QGEG H G+ A F R GC++ C +CD K Sbjct: 24 MLPLMEEFYTIQGEGSHTGKAAYFIRVGGCDV-----------GCHWCDV--------KE 64 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +E K + V+TGGEPL PL L + G ++ +ET+G Sbjct: 65 SWDQEKHPPTAVEAIVANAAKYSKTIVVTGGEPLTWDMGPLTTGLKEEGMQVHIETSGAY 124 Query: 123 EPPQGIDWICVSPKAGCDLKI------KGGQELKLVFPQVNVSPENYIGFDFERFS---- 172 DWIC+SPK +K+ + ELK++ N + + E+ S Sbjct: 125 PLSGTWDWICLSPK---KMKMPLPEVYEAAHELKVIV--FNKHDFAFAKAEAEKVSSNCK 179 Query: 173 --LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP + E+ L + +NP+W +S+QTHK++ I Sbjct: 180 LYLQP-EWSVREKMIPLITEFVMENPEWHVSLQTHKYLNI 218 >gi|50122475|ref|YP_051642.1| hypothetical protein ECA3554 [Pectobacterium atrosepticum SCRI1043] gi|49613001|emb|CAG76452.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 223 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 110/229 (48%), Gaps = 31/229 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58 Y I E+F TLQGEG G AVF R GC + W + D+L+ + D V + Sbjct: 3 YPINEMFQTLQGEGYFTGVPAVFVRLQGCPVGCSWCDTKHTWDKLAERETSLDQVLVKTE 62 Query: 59 GTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G + D + L+ +Q T R+ V+TGGEP + PL L K+GF +E Sbjct: 63 ESDAWGAASADDILALMAQQGYTA----RHIVITGGEPCIHDLAPLTLQLEKQGFSCQIE 118 Query: 118 TNGTIE---PPQGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQVNVSPENYI-- 164 T+GT + P+ W+ VSPK D ++ E+K V + ++ + + Sbjct: 119 TSGTHDVRCSPKT--WVTVSPKVNMRGGMKVLDQALQRADEIKHPVARERDIEALDTLLA 176 Query: 165 GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 D ++ +LQP+ ++ T L I+ C WRLS+QTHK++ I Sbjct: 177 RLDDDKPRIVALQPISQK--DDATKLCIATCIAR-NWRLSMQTHKYLNI 222 >gi|317492851|ref|ZP_07951275.1| radical SAM domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918973|gb|EFV40308.1| radical SAM domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 223 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 105/244 (43%), Gaps = 61/244 (25%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54 Y I E+F TLQGEG + G A+F R GC + C +CDT Sbjct: 3 YPINELFQTLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEQLPERE 51 Query: 55 VGI--------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 +G+ + G DQL ++ E+ T R+ V+TGGEP + PL + Sbjct: 52 IGMNEILIKTAESDAWGSATPDQLLAILHERGYTA----RHVVITGGEPCIHDLRPLTEL 107 Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG 165 LN+ GF +ET+GT E W+ VSPK + +KGG +K++ + + E Sbjct: 108 LNQHGFSCQIETSGTHEIRCSDATWVTVSPK----VNMKGG--MKVLESALIRADEVKHP 161 Query: 166 FDFER-------------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHK 206 ER +LQP+ E T L I C WRLS+QTHK Sbjct: 162 VARERDIEDLDTLLAVLHDDKQRIIALQPISQK--ESATKLCIETCIAR-NWRLSMQTHK 218 Query: 207 FIGI 210 ++ I Sbjct: 219 YLNI 222 >gi|313206128|ref|YP_004045305.1| radical sam domain protein [Riemerella anatipestifer DSM 15868] gi|312445444|gb|ADQ81799.1| Radical SAM domain protein [Riemerella anatipestifer DSM 15868] gi|315022935|gb|EFT35958.1| Queuosine Biosynthesis QueE Radical SAM [Riemerella anatipestifer RA-YM] Length = 209 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 91/220 (41%), Gaps = 43/220 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F T+QGEG + G+ A F R GC++ C +CD + Sbjct: 17 VMEHFYTIQGEGAYTGKAAYFIRLGGCDV-----------GCHWCDVK-------ESWDP 58 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 N+ L D E I + VLTGGEPL+ L + L G I +ET+G E Sbjct: 59 NLHPLMDAEEVAQIAA-NHSKTIVLTGGEPLMWNLEILTKKLKDLGCTIHIETSGAYEIS 117 Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185 IDW+C+SPK K G + ++ + N I F+ F + +N Sbjct: 118 GHIDWVCLSPK-------KTGLPKESIYAKAN--ELKVIIFNNHDFKFAEEQASKVSQNC 168 Query: 186 NLAI---------------SYCFQNPKWRLSVQTHKFIGI 210 + Y +NPKW+ SVQTHK++ I Sbjct: 169 KFYLQSEWSKRDEMYPKITDYILENPKWQASVQTHKYLNI 208 >gi|253689736|ref|YP_003018926.1| hypothetical protein PC1_3374 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756314|gb|ACT14390.1| conserved hypothetical protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 223 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 110/229 (48%), Gaps = 31/229 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58 Y I E+F TLQGEG G AVF R GC + W + D+L+ + D V + Sbjct: 3 YPINEMFQTLQGEGYFTGVPAVFVRLQGCPVGCSWCDTKHTWDKLAERETSLDQVLVKTE 62 Query: 59 GTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G + D + L+ +Q T R+ V+TGGEP + PL L K+GF +E Sbjct: 63 ESDAWGAASADDILALMTQQGYTA----RHIVITGGEPCIHDLTPLTLQLEKQGFSCQIE 118 Query: 118 TNGTIE---PPQGIDWICVSPKAG-------CDLKIKGGQELKL-VFPQVNVSPENYI-- 164 T+GT + P+ W+ VSPK D ++ E+K V + ++ + + Sbjct: 119 TSGTHDVRCSPKT--WVTVSPKVNMRGGMKVLDQALQRADEIKHPVARERDIEALDALLA 176 Query: 165 GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 D ++ +LQP+ ++ T L I+ C WRLS+QTHK++ I Sbjct: 177 RLDDDKPRIVALQPISQK--DDATKLCIATCIAR-NWRLSMQTHKYLNI 222 >gi|167856373|ref|ZP_02479100.1| hypothetical protein HPS_10855 [Haemophilus parasuis 29755] gi|167852511|gb|EDS23798.1| hypothetical protein HPS_10855 [Haemophilus parasuis 29755] Length = 204 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 104/225 (46%), Gaps = 45/225 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF TLQGEG + G ++F RF CNL C +CDT++ Sbjct: 6 YRIVEIFETLQGEGFNTGMPSIFIRFGKCNL-----------ACPWCDTNY--------N 46 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-RGFEIAVETNGTI 122 +Y LAD+++ + + ++TGGEP +Q+D+ + K G+ IA+ETNG Sbjct: 47 QYETKTLADIMQ---VVKGFSAKNIIITGGEPTIQLDLTYLLDTLKAEGYFIAIETNGLK 103 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN----VSPENYIGF--------DFER 170 P ID+I SPK ++ LK P N V + + F ER Sbjct: 104 PVPPQIDYIATSPK-----RLYQKNYLKHHIPFANEVRIVVDGDVLAFCEQIESTIKAER 158 Query: 171 FSLQPMDG----PFLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210 + L P + LE T L ++ P+W+LS+QTHK GI Sbjct: 159 YYLSPCEENGVMNMLETITQLGKLNQRPNKPRWQLSIQTHKMAGI 203 >gi|261380779|ref|ZP_05985352.1| radical SAM domain protein [Neisseria subflava NJ9703] gi|284796241|gb|EFC51588.1| radical SAM domain protein [Neisseria subflava NJ9703] Length = 211 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 103/222 (46%), Gaps = 38/222 (17%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 12 YRIVEIFESLQGEGWNTGMPAVFIRLGKCNL-----------ACSWCDTDYL-------- 52 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 ++ + L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 53 KFGMMSLSDILGR---LKTYTARNIIITGGEPTIQPHLDTLLNALKAEGYFLCIETNGLN 109 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF--DFER------FSLQ 174 P ID++ SPKA K + G K ++ V+ + I F + ER + L Sbjct: 110 PAPPQIDYVATSPKACYAAKYESGCIEKADEVRI-VADGDVIAFCQEMERKIRAQHYYLS 168 Query: 175 P--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 P DG +T I P W+LSVQTHK+ GI Sbjct: 169 PCEQDGVMNIYDTIRQIGVLNSRPDAPVHWQLSVQTHKWAGI 210 >gi|71280858|ref|YP_269588.1| radical SAM domain-containing protein [Colwellia psychrerythraea 34H] gi|71146598|gb|AAZ27071.1| radical SAM domain protein [Colwellia psychrerythraea 34H] Length = 222 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 104/236 (44%), Gaps = 44/236 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT---------DF 54 Y I E+F T+QGEG G+ ++F R GC + C +CDT D Sbjct: 3 YKINELFETIQGEGSFTGQPSIFIRLQGCPV-----------GCSWCDTKHTWDIELDDQ 51 Query: 55 VGIQGTKGGRYNVDQLADLIEEQWITGEKE----GRYCVLTGGEPLLQVDVPLIQALNKR 110 V + Q A+ E + KE ++ V+TGGEP + PL + Sbjct: 52 VSPDIMLAKKAETSQWANFSAEDILALVKEKHFKAKHIVITGGEPCMVDLTPLCETFEDL 111 Query: 111 GFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENY 163 G+ +ET+GT E W+ VSPK +K++GG + L + N V+ E Sbjct: 112 GYSTQIETSGTFEIITTEKCWVTVSPK----IKMRGGYDILASAMSRANEIKHPVATEQN 167 Query: 164 IGFDFERFSLQPMDG------PFLEEN--TNLAISYCFQNPKWRLSVQTHKFIGIR 211 + E ++ ++ P ++ T LAI+ C N WRLSVQ HK+IGI Sbjct: 168 VDDLKELLAMHQVENTPVYLQPISQKKRATELAIATCIAN-NWRLSVQVHKYIGIE 222 >gi|33866959|ref|NP_898518.1| organic radical activating protein [Synechococcus sp. WH 8102] gi|33639560|emb|CAE08944.1| possible organic radical activating enzyme [Synechococcus sp. WH 8102] Length = 206 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/213 (31%), Positives = 100/213 (46%), Gaps = 23/213 (10%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F +LQGEG H+GR A F R +GCN+ C +CDT T R Sbjct: 10 VVETFHSLQGEGHHSGRSAFFIRLAGCNV-----------GCPWCDTKHSWPVNTHPQR- 57 Query: 66 NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNK-RGFEIAVETNGTIE 123 ++ LA +E+ E+ G + V+TGGEPL L AL + + +ET+G Sbjct: 58 SLRALAADVEQ----AERNGAAFTVITGGEPLQHNLDGLASALREASSHPLHLETSGVDG 113 Query: 124 PPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVN--VSPENYIGFDFERFSLQPMDG 178 DWI +SPK + + ELK+V + + E+ ++ L G Sbjct: 114 LSGDPDWITLSPKPHRPPRQELLSHCDELKVVIHTADDLLFAESMAAAVSKQTVLLLQPG 173 Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 E LAI + P+WRLS+QTHK++G+R Sbjct: 174 WDSSEGQRLAIDHVQNQPRWRLSLQTHKWLGVR 206 >gi|307261578|ref|ZP_07543246.1| hypothetical protein appser12_11390 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868701|gb|EFN00510.1| hypothetical protein appser12_11390 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 210 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 100/222 (45%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + I EIF +LQGEG + G +F R CNL C +CDT++ Sbjct: 11 FPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY--------N 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 Y LA ++E + ++TGGEP + ++ L+ G+ +A+ETNG Sbjct: 52 EYEKWSLAKILER---VKSYSAKNIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNGLK 108 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSP-----ENYIGFDFERFS 172 P+ ID+I SPK K I E+++V + +V E I + S Sbjct: 109 AVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVVDKGDVQSFCEQIETQITAEHYYLS 168 Query: 173 LQPMDGP--FLEENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211 +DG LE T L I + PKW+LS+QTHK +GI Sbjct: 169 PCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGIE 210 >gi|326800682|ref|YP_004318501.1| radical SAM protein [Sphingobacterium sp. 21] gi|326551446|gb|ADZ79831.1| Radical SAM domain protein [Sphingobacterium sp. 21] Length = 230 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 95/215 (44%), Gaps = 26/215 (12%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 L + E F T+QGEG H G+ A F R GC++ C +CD + Sbjct: 34 LLPLMEEFYTIQGEGYHTGKAAYFIRLGGCDV-----------GCHWCDVK----ESWDA 78 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + D+I + V+TGGEPL+ L + L G + +ET+G Sbjct: 79 ELHPLTKADDIIRN---AARYPAKTVVITGGEPLIYNLDYLTRGLQDAGIKTFIETSGAY 135 Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVSPENYIGFDF---ERFSLQP 175 DW+C+SP KA I+ ELK +VF + + + LQP Sbjct: 136 PLSGHWDWVCLSPKKFKAPLPDVIEAAGELKVIVFNKSDFEWAERYAAQIPVGRKLYLQP 195 Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + T L I Y +NPKW +S+QTHK++ I Sbjct: 196 -EWSKAAQMTPLIIDYVKENPKWEISLQTHKYLNI 229 >gi|33864484|ref|NP_896044.1| putative organic radical activating protein [Prochlorococcus marinus str. MIT 9313] gi|33641264|emb|CAE22394.1| possible organic radical activating enzyme [Prochlorococcus marinus str. MIT 9313] Length = 226 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 101/236 (42%), Gaps = 46/236 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F +LQGEG H GR A F R +GC++ C +CDT + Sbjct: 7 VVETFHSLQGEGAHVGRSAFFIRLAGCDV-----------GCSWCDTKH-SWNSRNHPQI 54 Query: 66 NVDQLADLIEEQWITGEKEG-RYCVLTGGEPLLQVDVPLIQALNKRG-------FEIAVE 117 ++QLA E+ T K+G + VLTGGEPL PL +AL++ I +E Sbjct: 55 TLEQLA----EETATAAKDGAAFVVLTGGEPLQHNIAPLCEALHRATETNHGGPLAIHLE 110 Query: 118 TNGTIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVN---------------VS 159 T+G + WI +SPK + + ELK+V + + Sbjct: 111 TSGVNQLSGVPTWITLSPKRHAPPRTDLLAACHELKVVVHETDDLNFAEDMAKAALEARK 170 Query: 160 PENYIGFDFERFSLQPM----DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +N S +P+ G LA + +P WRLS+QTHK++GIR Sbjct: 171 NDNASQSRLSNTSKEPLLFLQPGWKTTRGQQLAFEHVQSHPHWRLSMQTHKWLGIR 226 >gi|22124729|ref|NP_668152.1| hypothetical protein y0816 [Yersinia pestis KIM 10] gi|45440171|ref|NP_991710.1| hypothetical protein YP_0312 [Yersinia pestis biovar Microtus str. 91001] gi|51595107|ref|YP_069298.1| coenzyme PQQ synthesis protein [Yersinia pseudotuberculosis IP 32953] gi|108808863|ref|YP_652779.1| hypothetical protein YPA_2872 [Yersinia pestis Antiqua] gi|108810883|ref|YP_646650.1| hypothetical protein YPN_0718 [Yersinia pestis Nepal516] gi|145600242|ref|YP_001164318.1| hypothetical protein YPDSF_2985 [Yersinia pestis Pestoides F] gi|153949574|ref|YP_001402270.1| radical SAM domain-containing protein [Yersinia pseudotuberculosis IP 31758] gi|153997583|ref|ZP_02022683.1| hypothetical protein YPE_4042 [Yersinia pestis CA88-4125] gi|162421287|ref|YP_001605539.1| radical SAM domain-containing protein [Yersinia pestis Angola] gi|165925701|ref|ZP_02221533.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165936653|ref|ZP_02225220.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|166009994|ref|ZP_02230892.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166214107|ref|ZP_02240142.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167398407|ref|ZP_02303931.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420659|ref|ZP_02312412.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423406|ref|ZP_02315159.1| radical SAM domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470705|ref|ZP_02335409.1| radical SAM domain protein [Yersinia pestis FV-1] gi|170025659|ref|YP_001722164.1| radical SAM domain-containing protein [Yersinia pseudotuberculosis YPIII] gi|186894119|ref|YP_001871231.1| radical SAM domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|218930391|ref|YP_002348266.1| hypothetical protein YPO3374 [Yersinia pestis CO92] gi|229839004|ref|ZP_04459163.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896484|ref|ZP_04511652.1| conserved protein [Yersinia pestis Pestoides A] gi|229899572|ref|ZP_04514713.1| conserved protein [Yersinia pestis biovar Orientalis str. India 195] gi|229901094|ref|ZP_04516217.1| conserved protein [Yersinia pestis Nepal516] gi|270489273|ref|ZP_06206347.1| radical SAM domain protein [Yersinia pestis KIM D27] gi|294505081|ref|YP_003569143.1| hypothetical protein YPZ3_2972 [Yersinia pestis Z176003] gi|21957546|gb|AAM84403.1|AE013684_5 hypothetical protein y0816 [Yersinia pestis KIM 10] gi|45435027|gb|AAS60587.1| Organic radical activating enzymes [Yersinia pestis biovar Microtus str. 91001] gi|51588389|emb|CAH19997.1| putative coenzyme PQQ synthesis protein, nitrogenase iron-molybdenum domain [Yersinia pseudotuberculosis IP 32953] gi|108774531|gb|ABG17050.1| hypothetical protein YPN_0718 [Yersinia pestis Nepal516] gi|108780776|gb|ABG14834.1| hypothetical protein YPA_2872 [Yersinia pestis Antiqua] gi|115349002|emb|CAL21963.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145211938|gb|ABP41345.1| hypothetical protein YPDSF_2985 [Yersinia pestis Pestoides F] gi|149289220|gb|EDM39300.1| hypothetical protein YPE_4042 [Yersinia pestis CA88-4125] gi|152961069|gb|ABS48530.1| radical SAM domain protein [Yersinia pseudotuberculosis IP 31758] gi|162354102|gb|ABX88050.1| radical SAM domain protein [Yersinia pestis Angola] gi|165915302|gb|EDR33912.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|165922313|gb|EDR39490.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165990901|gb|EDR43202.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166204738|gb|EDR49218.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166961465|gb|EDR57486.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050911|gb|EDR62319.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057576|gb|EDR67322.1| radical SAM domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752193|gb|ACA69711.1| Radical SAM domain protein [Yersinia pseudotuberculosis YPIII] gi|186697145|gb|ACC87774.1| Radical SAM domain protein [Yersinia pseudotuberculosis PB1/+] gi|229681819|gb|EEO77912.1| conserved protein [Yersinia pestis Nepal516] gi|229687064|gb|EEO79139.1| conserved protein [Yersinia pestis biovar Orientalis str. India 195] gi|229695370|gb|EEO85417.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700558|gb|EEO88589.1| conserved protein [Yersinia pestis Pestoides A] gi|262363141|gb|ACY59862.1| hypothetical protein YPD4_2958 [Yersinia pestis D106004] gi|262367071|gb|ACY63628.1| hypothetical protein YPD8_2956 [Yersinia pestis D182038] gi|270337777|gb|EFA48554.1| radical SAM domain protein [Yersinia pestis KIM D27] gi|294355540|gb|ADE65881.1| hypothetical protein YPZ3_2972 [Yersinia pestis Z176003] gi|320016570|gb|ADW00142.1| conserved protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 223 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 105/234 (44%), Gaps = 39/234 (16%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59 LY I E+F TLQGEG G A+F R GC + W + R D + ++ Sbjct: 2 LYPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKEADREVDMQRIMVKT 61 Query: 60 TKG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 + G + QL DL +Q T R+ V+TGGEP + PL L + GF + Sbjct: 62 AESDAWGSASEQQLLDLFAQQGYT----ARHVVITGGEPSIYDLQPLTSLLEQAGFSCQI 117 Query: 117 ETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE-------------- 161 ET+GT E W+ VSPK + ++GG LK++ + + E Sbjct: 118 ETSGTHEVRCSAQTWVTVSPK----VNMRGG--LKILSQALQRADEIKHPVGRLRDIEAL 171 Query: 162 ----NYIGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + D +R +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 172 EALLATLDDDKKRIIALQPISQK--EDATKLCIETCIAK-NWRLSMQTHKYLNI 222 >gi|59800591|ref|YP_207303.1| hypothetical protein NGO0132 [Neisseria gonorrhoeae FA 1090] gi|59717486|gb|AAW88891.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] Length = 335 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 104/228 (45%), Gaps = 48/228 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 136 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 176 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 177 TFGMMSLSDILGR---LKTYAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLK 233 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I+ E+++ V+ + +GF + ER Sbjct: 234 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDAVGFCENMERKIRAH 287 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 + L P DG +T I P W+LSVQTHK+ GI Sbjct: 288 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 335 >gi|319952143|ref|YP_004163410.1| radical sam domain protein [Cellulophaga algicola DSM 14237] gi|319420803|gb|ADV47912.1| Radical SAM domain protein [Cellulophaga algicola DSM 14237] Length = 215 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 97/222 (43%), Gaps = 39/222 (17%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 ++ + E F T+QGEG H G A F R GC++ C +CD Sbjct: 19 EMLPLMEEFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCDVK-------- 59 Query: 62 GGRYNVDQLADLIEEQWIT-GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 +N D E I+ K V+TGGEPL PL + L R + +ET+G Sbjct: 60 -ESWNADTHPPTATETIISNAAKYSDTIVITGGEPLTWDMGPLTKGLKARNLQTHIETSG 118 Query: 121 TIEPPQGI-DWICVSPKA-----------GCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 P G+ DWIC+SPK +LK+ + +F + + N + Sbjct: 119 AY-PLTGVWDWICLSPKKNKLPEGRIYDEAHELKMIIFNKHDFIFAEEQAAKTNKECILY 177 Query: 169 ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP + ++ L + Y +NPKW++S+QTHK++ I Sbjct: 178 ----LQP-EWSVRDKMVPLIVDYVMKNPKWKVSLQTHKYLNI 214 >gi|332160379|ref|YP_004296956.1| hypothetical protein YE105_C0757 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604386|emb|CBY25884.1| queuosine Biosynthesis QueE Radical SAM [Yersinia enterocolitica subsp. palearctica Y11] gi|325664609|gb|ADZ41253.1| hypothetical protein YE105_C0757 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859861|emb|CBX70192.1| uncharacterized protein ygcF [Yersinia enterocolitica W22703] Length = 223 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 105/231 (45%), Gaps = 35/231 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60 Y I E+F TLQGEG G A+F R GC + W + A R D + ++ Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKAADREVDMQRIMVKTV 62 Query: 61 KG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G + QL D+ +Q T R+ V+TGGEP + +PL L + G+ +E Sbjct: 63 ENDAWGTASEQQLLDIFLQQGYTA----RHVVITGGEPAIYDLLPLTSQLEQAGYSCQIE 118 Query: 118 TNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF---------- 166 T+GT E W+ VSPK + ++GG ++ Q ++ +G Sbjct: 119 TSGTHEVQCSAATWVTVSPK----VNMRGGLKILPQALQRADEIKHPVGRLRDIEALEAL 174 Query: 167 ------DFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 D +R +LQP+ EE T L I C WRLS+QTHK++ I Sbjct: 175 LATLADDKKRIIALQPISQK--EEATKLCIETCIAK-NWRLSMQTHKYLNI 222 >gi|304399225|ref|ZP_07381092.1| Radical SAM domain protein [Pantoea sp. aB] gi|304353279|gb|EFM17659.1| Radical SAM domain protein [Pantoea sp. aB] Length = 223 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 104/236 (44%), Gaps = 43/236 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGRE---QDRLSAQCRFCDTDFVG 56 Y I E+F TLQGEG + G A+F R GC + W + + R + D Sbjct: 2 FYPINEMFQTLQGEGYYTGVPAIFIRLQGCPVGCSWCDTKHTWEKRTDRETSLGDILIKT 61 Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 ++ G + L + I +Q T R+ V+TGGEP + PL AL + GF+ + Sbjct: 62 VESDAWGDADAATLVNAIAQQGWTA----RHVVITGGEPAIYDLRPLTTALEQHGFQCQI 117 Query: 117 ETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER----- 170 ET+GT E W+ VSPK + ++GG + V PQ +S + I R Sbjct: 118 ETSGTHEIHCSEQTWVTVSPK----VNMRGGYD---VLPQA-LSRADEIKHPVARERDVD 169 Query: 171 ----------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 170 ALDLLLAGIDDTKARIIALQPISRK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|227114089|ref|ZP_03827745.1| hypothetical protein PcarbP_14034 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 223 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 110/229 (48%), Gaps = 31/229 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58 Y I E+F TLQGEG G AVF R GC + W + D+L+ + D V + Sbjct: 3 YPINEMFQTLQGEGYFTGVPAVFVRLQGCPVGCSWCDTKHTWDKLAERETSLDQVLVKTE 62 Query: 59 GTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G + D + L+ +Q T R+ V+TGGEP + PL L K+GF +E Sbjct: 63 ESDAWGAASADDILALMVQQGYTA----RHIVITGGEPCIHDLAPLTLQLEKQGFSCQIE 118 Query: 118 TNGTIE---PPQGIDWICVSPKAG-------CDLKIKGGQELKL-VFPQVNVSPENYI-- 164 T+GT + P+ W+ VSPK D ++ E+K V + ++ + + Sbjct: 119 TSGTHDVRCSPKT--WVTVSPKVNMRGGMKVLDQALQRADEIKHPVARERDIEALDALLA 176 Query: 165 GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 D ++ +LQP+ ++ T L I+ C WRLS+QTHK++ I Sbjct: 177 RLDDDKPRIVALQPISQK--DDATKLCIATCIAR-NWRLSMQTHKYLNI 222 >gi|154149814|ref|YP_001403432.1| radical SAM domain-containing protein [Candidatus Methanoregula boonei 6A8] gi|153998366|gb|ABS54789.1| Radical SAM domain protein [Methanoregula boonei 6A8] Length = 202 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 103/226 (45%), Gaps = 46/226 (20%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGEG G +F R +GCNL CR+CDT + GT+ Sbjct: 3 IAEIFKSLQGEGVRQGTPCIFIRLAGCNL-----------ACRWCDTQYARSGGTE---T 48 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE 123 + D+ ++EE W ++ R +TGGEPLLQ DV PL+ +L+KRG I +ETNGTI+ Sbjct: 49 SCDK---ILEEIW---KENPRSVCITGGEPLLQTDVLLPLLASLHKRGITIDIETNGTID 102 Query: 124 --PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF----------ERF 171 P Q +C+ D+K E + + P + + F E Sbjct: 103 FSPVQPFAAVCM------DVKCPSSGERSDLSLLARIRPTDSVKFVVGDLADCRYAQEVL 156 Query: 172 SLQPMDG-----PFLEENTNLAISYCFQNP-KWRLSVQTHKFIGIR 211 + + G P + + + + N R +Q HK +G++ Sbjct: 157 ARHAIAGECFLSPVYGTDCDTIVRFILDNNLPVRFQLQLHKILGVK 202 >gi|167623866|ref|YP_001674160.1| radical SAM domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167353888|gb|ABZ76501.1| Radical SAM domain protein [Shewanella halifaxensis HAW-EB4] Length = 222 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 110/232 (47%), Gaps = 38/232 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFV-GIQG 59 Y + E+F T+QGEG G AVF R GC + W +Q + + V + G Sbjct: 3 YPVNEVFETIQGEGTFTGVPAVFVRLQGCPVGCSWCDTKQTWELLEANHVAKELVIQVDG 62 Query: 60 TKGGRYNVDQLADLIEEQWITGEKE----GRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115 T G + ++L E+ + K+ ++ V+TGGEP L L Q L+ +G++ Sbjct: 63 TIG------RWSELSAEELVNAFKDKGFNAKHIVITGGEPCLYDLTELTQYLHSQGYQTQ 116 Query: 116 VETNGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENYI---- 164 +ET+GT + D W+ VSPK + +KGG + L + N ++ +N+I Sbjct: 117 IETSGTFDVLCHADTWVTVSPK----VNMKGGYKVLAQALNRANEIKHPIATQNHIDELD 172 Query: 165 ----GFDF--ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 G D + LQP+ T LA+S C WRLS+QTHK++ I Sbjct: 173 ELLEGIDLTDKTVCLQPISQK--ARATELAMSTCIAR-NWRLSIQTHKYLDI 221 >gi|303250156|ref|ZP_07336358.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252734|ref|ZP_07534625.1| hypothetical protein appser6_12480 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651219|gb|EFL81373.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859766|gb|EFM91788.1| hypothetical protein appser6_12480 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 210 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 100/222 (45%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + I EIF +LQGEG + G +F R CNL C +CDT++ Sbjct: 11 FPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY--------N 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 Y +A ++E + ++TGGEP + ++ L+ G+ +A+ETNG Sbjct: 52 EYEKWSVAKILER---VKSYSAKNIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNGLK 108 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSP-----ENYIGFDFERFS 172 P+ ID+I SPK K I E+++V + +V E I + S Sbjct: 109 AVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVMDKGDVQSFCEQIETQITAEHYYLS 168 Query: 173 LQPMDGP--FLEENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211 +DG LE T L I + PKW+LS+QTHK +GI Sbjct: 169 PCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGIE 210 >gi|241759459|ref|ZP_04757563.1| NrdG protein [Neisseria flavescens SK114] gi|241320241|gb|EER56574.1| NrdG protein [Neisseria flavescens SK114] Length = 211 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 100/221 (45%), Gaps = 36/221 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 12 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 52 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 ++ + L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 53 KFGMMSLSDILGR---LKTYTARNVIITGGEPTIQPHLNTLLDALKAEGYFLCIETNGLN 109 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVF--PQVNVSPENYIGFDFERFSLQP 175 P ID++ SPKA K I+ E+++V V E + + L P Sbjct: 110 PAPPQIDYVATSPKACYAAKYESSCIEKADEVRIVADGDVVAFCQEMERKIRAQHYYLSP 169 Query: 176 --MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 DG +T I P W+LSVQTHK+ GI Sbjct: 170 CEQDGVMNIYDTIRQIGVLNSRPDAPVHWQLSVQTHKWAGI 210 >gi|146304722|ref|YP_001192038.1| radical SAM domain-containing protein [Metallosphaera sedula DSM 5348] gi|145702972|gb|ABP96114.1| Radical SAM domain protein [Metallosphaera sedula DSM 5348] Length = 210 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 111/230 (48%), Gaps = 44/230 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF ++QGEG G+ + F R +GCNL +C +CDT F I+ Sbjct: 3 YWIVEIFTSIQGEGLVIGKPSNFVRLAGCNL-----------RCVWCDTKFSWIRE---- 47 Query: 64 RYNVDQLADLIEEQWITGE--KEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 D + +EE ITG+ + ++ +TGGEPLLQ +PL L G+ +AVETNGT Sbjct: 48 ----DGVPMELEE--ITGKLSRSVKWTTITGGEPLLQDILPLASTLKNLGYNVAVETNGT 101 Query: 122 IEPPQG----IDWICVSPK---AGCDLKIKGGQELKLVFPQVNVSP-------ENYI--- 164 I+P Q +D VSPK +G L+ ++ + V V P +N++ Sbjct: 102 IKPKQELRKIVDVFSVSPKLSNSGHKLRYDFSEDWATYYKFVIVEPNRDLREVKNFVEEH 161 Query: 165 GFDFERFSLQPMDG---PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 D E+ +QP DG +++ L+ + +R+ Q H+ I R Sbjct: 162 RIDPEKVIVQP-DGNRQDYIQALKELSDAVMELGLPFRVLPQLHRIISYR 210 >gi|90414517|ref|ZP_01222492.1| putative organic radical activating enzyme [Photobacterium profundum 3TCK] gi|90324425|gb|EAS40987.1| putative organic radical activating enzyme [Photobacterium profundum 3TCK] Length = 222 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 109/232 (46%), Gaps = 35/232 (15%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCD-TDFVGIQ 58 +Y I E+F T+QGEG G A+F R C + W +Q + + D + + Sbjct: 1 MYKINEVFETIQGEGTFTGVPAIFVRLQVCPVGCSWCDTKQTWDAEPTDYASLNDIMAKK 60 Query: 59 GTKGGRYNVDQ--LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 G N+D + L+++Q T R+ V+TGGEP + +PL AL GF + Sbjct: 61 GDSPLWTNIDAQGIVALLQDQGYTA----RHVVITGGEPCIYDLIPLTAALETAGFNCQI 116 Query: 117 ETNGTIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNVSPE--NYIGF--DFERF 171 ET+GT E D W+ VSP KI +L ++ ++ + E + +G D E+ Sbjct: 117 ETSGTSEILATEDTWVTVSP------KINMKAKLPVLASALSRADEIKHPVGTSKDIEQL 170 Query: 172 SLQPMDGPFLEENTNLAISYCFQNPK-------------WRLSVQTHKFIGI 210 ++G L++N +A+ Q P+ WRLS+QTHK++ I Sbjct: 171 DTL-INGVTLKQNVTIALQPISQKPRATDLCIETCIKRNWRLSIQTHKYLAI 221 >gi|253988156|ref|YP_003039512.1| hypothetical protein PAU_00675 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779606|emb|CAQ82767.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 223 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 106/236 (44%), Gaps = 43/236 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDT 52 Y I EIF TLQGEG G A+F R GC + W + + + + T Sbjct: 2 FYPINEIFQTLQGEGFFTGVPAIFIRLQGCPVGCSWCDTKHTWEKKAEKQQMLETILLKT 61 Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF 112 + + + G + Q+A L +Q T R+ V+TGGEP + +PL + L G+ Sbjct: 62 N----ESDEWGEASPKQIATLFVQQGYTA----RHVVITGGEPCIYDLIPLTEELENLGY 113 Query: 113 EIAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGG-QELKLVFPQVN-----VSPENYIG 165 + +ET+GT W+ VSPK +K++GG Q L+ + N V+ E I Sbjct: 114 QCQIETSGTYHVECSAATWVTVSPK----VKMRGGYQVLQQALQRANEIKHPVARERDIE 169 Query: 166 FDFERF-----------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 170 ALDELLATLDNNSSRIIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|307257150|ref|ZP_07538922.1| hypothetical protein appser10_11500 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864312|gb|EFM96223.1| hypothetical protein appser10_11500 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 210 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 100/222 (45%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + I EIF +LQGEG + G +F R CNL C +CDT++ Sbjct: 11 FPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY--------N 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 Y +A ++E + ++TGGEP + ++ L+ G+ +A+ETNG Sbjct: 52 EYEKWSVAKILER---VKSYSAKNIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNGLK 108 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSP-----ENYIGFDFERFS 172 P+ ID+I SPK K I E+++V + +V E I + S Sbjct: 109 AVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVMDKGDVQSFCEQIETQITAEHYYLS 168 Query: 173 LQPMDGP--FLEENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211 +DG LE T L I + PKW+LS+QTHK +GI Sbjct: 169 PCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGIE 210 >gi|332042673|gb|EGI78873.1| Radical SAM domain protein [Lacinutrix algicola 5H-3-7-4] Length = 209 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 95/225 (42%), Gaps = 45/225 (20%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 K+ + E F T+QGEG H G A F R GC++ C +CD I Sbjct: 13 KMLPLMEEFYTIQGEGFHKGTAAYFVRIGGCDV-----------GCHWCDVKESWIA--- 58 Query: 62 GGRYNVDQLADLIEEQWITGEKE--GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 QL E + I + + V+TGGEPL L + L G I +ET+ Sbjct: 59 -------QLHPPTETEKIVANAKQYSKTIVVTGGEPLTWDMTELTKQLKAEGMNIHIETS 111 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKG----GQELKLVFPQVNVSPENYIGFDFERFSLQP 175 G E DWIC+SPK L +G ELK + N F F + Sbjct: 112 GAYELTGEWDWICLSPKK-MKLPTQGVYDKANELKCII-------YNKDDFRFAEEQAEK 163 Query: 176 MDGPFL----------EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++G + ++ + + Y +NPKW++S+QTHK++ I Sbjct: 164 VNGDCILYLQPEWSKRDKVVPMIVDYVMENPKWKVSLQTHKYLNI 208 >gi|117920607|ref|YP_869799.1| radical activating enzyme [Shewanella sp. ANA-3] gi|117612939|gb|ABK48393.1| radical activating enzyme [Shewanella sp. ANA-3] Length = 222 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 103/230 (44%), Gaps = 34/230 (14%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQD-RLSAQCRFCDTDFVGIQG 59 Y + E+F T+QGEG G A+F R GC + W +Q L + + + + G Sbjct: 3 YPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDLLEEKKVSPEQVITVDG 62 Query: 60 TKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G + L D + T R+ V+TGGEP + L L+ GF +E Sbjct: 63 SVGRWANHTAQSLIDAFNAKGYT----ARHVVITGGEPCMYDLNELTHTLHAAGFATQIE 118 Query: 118 TNGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENYI------ 164 T+GT E D W+ VSPK + +KGG + L + N ++ EN+I Sbjct: 119 TSGTFEVKCDADTWVTVSPK----INMKGGYKVLAQALIRANEIKHPIATENHIDELDEL 174 Query: 165 --GFDF--ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 G D + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 175 LKGIDVSAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221 >gi|325287093|ref|YP_004262883.1| Radical SAM domain-containing protein [Cellulophaga lytica DSM 7489] gi|324322547|gb|ADY30012.1| Radical SAM domain protein [Cellulophaga lytica DSM 7489] Length = 215 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 97/221 (43%), Gaps = 37/221 (16%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 ++ + E F T+QGEG H G A F R GC++ C +CD T Sbjct: 19 EMLPLMEEFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCDVKESWNAATH 67 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 +D + + K V+TGGEPL PL +AL + + +ET+G Sbjct: 68 PPT-TIDAIVN-------NAAKYSNTIVVTGGEPLTWNMAPLTEALKAKNLQTHIETSGA 119 Query: 122 IEPPQGIDWICVSPKAGC---DLKIKGGQELKLVFPQVNVSPENYIGFDFERFS------ 172 DWIC+SPK + ELK++ + +N F E+ + Sbjct: 120 YTLTGIWDWICLSPKKNKLPQGIIYDKADELKMI-----IYNKNDFKFAEEQAAKVNKDC 174 Query: 173 ---LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP + ++ T L + + +NP+W++S+QTHK++ I Sbjct: 175 ILYLQP-EWSVKDKMTPLIVDFVMKNPQWKVSLQTHKYLNI 214 >gi|327405865|ref|YP_004346703.1| Radical SAM domain-containing protein [Fluviicola taffensis DSM 16823] gi|327321373|gb|AEA45865.1| Radical SAM domain protein [Fluviicola taffensis DSM 16823] Length = 204 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 99/214 (46%), Gaps = 26/214 (12%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + E F T+QGEG + G A F R GC++ C +CD Sbjct: 9 YPVMEHFYTIQGEGKYTGTSAYFIRLGGCDV-----------GCVWCDVK-ESWDADIHP 56 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 + VD+L ++ + G V+TGGEP + L+ AL+ G +A+ET+GT Sbjct: 57 KMTVDELITVV------AQYPGELVVITGGEPAMYDLSVLVDALHSIGKYVAIETSGTSP 110 Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELKLV-FPQVNV--SPENYIGF-DFERFSLQPM 176 +DW SP K+ D ELK+V F Q ++ + E+ + D LQP Sbjct: 111 LVGAVDWYTFSPKKFKSPVDEAYNKASELKIVIFHQSDLKWAEEHSLKVNDACVLYLQP- 169 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E+ I Y +PKW++S+QTHK++ I Sbjct: 170 EWSKREQLLPTIIEYVKNHPKWKISLQTHKYLEI 203 >gi|251792175|ref|YP_003006895.1| NrdG protein [Aggregatibacter aphrophilus NJ8700] gi|247533562|gb|ACS96808.1| NrdG protein [Aggregatibacter aphrophilus NJ8700] Length = 209 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 107/224 (47%), Gaps = 43/224 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y+I EIF +LQGEG + G ++F RF CNL C +CDT++ Sbjct: 11 YNIVEIFESLQGEGFNTGMPSIFVRFGKCNL-----------ACPWCDTNY--------N 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ LA ++EE + ++TGGEP + ++ L+ + G+ +A+ETNG Sbjct: 52 QFERMTLAQIMEE---VRSFSAKNIIITGGEPTIVPNIELLLNQMKSEGYFLAIETNGLK 108 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS------PENYIGFDFERF 171 P ID+I SPK K I+ E+++V +VS EN R+ Sbjct: 109 PIPTQIDYIATSPKRLYQHKYEQRCIEFADEVRIV-ADGDVSDFCALIEEN---IQATRY 164 Query: 172 SLQP--MDGP--FLEENTNLAISYCFQN-PKWRLSVQTHKFIGI 210 L P ++G LE T L + N PKW LSVQTHK IGI Sbjct: 165 YLSPCEINGKMNLLETITQLGLLNQRPNKPKWLLSVQTHKLIGI 208 >gi|119774960|ref|YP_927700.1| radical activating enzyme [Shewanella amazonensis SB2B] gi|119767460|gb|ABM00031.1| radical activating enzyme [Shewanella amazonensis SB2B] Length = 233 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 102/233 (43%), Gaps = 34/233 (14%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQD-RLSAQCRFCDTDFVG 56 M Y I E+F T+QGEG H G A+F R GC + W Q + Q + D + Sbjct: 11 MTEYPINEVFETIQGEGSHTGLPAIFVRLQGCPVACPWCDTAQTWDVLEQSKVAPADVIQ 70 Query: 57 IQGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114 + G+ G ++ L ++ T + V+TGGEP + L Q GF Sbjct: 71 VDGSIGRWAMHSASSLVAAFNQKGFT----AKLVVITGGEPCMHDLTDLTQGFEAEGFHC 126 Query: 115 AVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENYI--- 164 +ET+GT E ++ VSPK + +KGG LK + N V+ + +I Sbjct: 127 QIETSGTFEVHCSDRTYVTVSPK----INMKGGYPVLKQALVRANEIKHPVATDAHIDEL 182 Query: 165 -----GFDF--ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 G D + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 183 DALLEGIDTSGKTICLQPISQK--PRATELAMKTCIAR-NWRLSIQTHKYLNI 232 >gi|322514966|ref|ZP_08067979.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Actinobacillus ureae ATCC 25976] gi|322119074|gb|EFX91234.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Actinobacillus ureae ATCC 25976] Length = 210 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 104/220 (47%), Gaps = 36/220 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGEG + G +F R CNL C +CDT++ + ++ Sbjct: 13 IVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY-----NEYEKW 56 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124 NV ++ + ++ + ++TGGEP + ++ L+ G+ +A+ETNG Sbjct: 57 NVAKILERVKSY------SAKNIIITGGEPTMYANLSVLLDVFKVEGYWLAIETNGLKAV 110 Query: 125 PQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS---PENYIGFDFERFSLQP- 175 P+ ID+I SPK K I E+++V + +V + E + L P Sbjct: 111 PKQIDYIATSPKLMYQEKYLRECIPFANEVRIVMDKGDVQGFCEQIETQITAEHYYLSPC 170 Query: 176 -MDGP--FLEENTNLAISYCFQN-PKWRLSVQTHKFIGIR 211 +DG LE T L I N PKW+LS+QTHK +GI Sbjct: 171 EVDGKMNLLETITQLGILNQRANKPKWQLSLQTHKLVGIE 210 >gi|260772755|ref|ZP_05881671.1| queuosine Biosynthesis QueE Radical SAM [Vibrio metschnikovii CIP 69.14] gi|260611894|gb|EEX37097.1| queuosine Biosynthesis QueE Radical SAM [Vibrio metschnikovii CIP 69.14] Length = 224 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 103/243 (42%), Gaps = 53/243 (21%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL----------WSGREQDRLSAQCRFC 50 M LY + EIF T+QGEG G AVF R C + W QD+ S + Sbjct: 1 MTLYKVNEIFETIQGEGVFTGVPAVFVRLQQCPVGCAWCDTKQTWDAEPQDQRSFE---- 56 Query: 51 DTDFVGIQGTKGG--RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 + QG + + +Q+ ++Q T ++ V+TGGEP L VPL +A Sbjct: 57 --QIIVKQGDSPTWCQGSAEQIVAQYQQQGYTA----KHIVITGGEPCLYDLVPLTEAFE 110 Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKI--------------------KGGQ 147 G + +ET+GT E W+ VSPK K+ K Sbjct: 111 AIGCQCQIETSGTFEIKASAKTWVTVSPKIAMKGKLPIVPSALQRANEIKHPVGTEKDIA 170 Query: 148 ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207 +L+ + QV +SP+ I +LQP+ T L I C WRLS+QTHK+ Sbjct: 171 QLEALLAQVAISPDTII-------ALQPISQK--PRATQLCIETCITR-NWRLSIQTHKY 220 Query: 208 IGI 210 + I Sbjct: 221 LNI 223 >gi|239948218|ref|ZP_04699971.1| queuosine biosynthesis protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239922494|gb|EER22518.1| queuosine biosynthesis protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 225 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 105/229 (45%), Gaps = 48/229 (20%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 ++ IF T+QGEG G A+F R GCNL C FCDT+F Sbjct: 20 VQSIFKTIQGEGIFVGCPAIFIRLGGCNLA-----------CNFCDTEFEDFD-----LV 63 Query: 66 NVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122 ++D++ + +E + EK V+TGGEP+ Q L L F++ +ETNGT+ Sbjct: 64 DIDKILNKVEILALNSKNEKSINLVVITGGEPMRQPIELLCHKLLDLDFKVQIETNGTLY 123 Query: 123 -EPPQGIDWICVSPKAGCD--LKIKGGQELKL---------------VFPQVNVSPENYI 164 P+G+ IC SPKAG KI+ K+ + P+V + N Sbjct: 124 RSLPKGVSIIC-SPKAGKTGYSKIRENLLPKISAVKFIVAKNILEYSIIPEVGQTSYNIP 182 Query: 165 GFDFERFSLQPMDGP---FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 F +QPMD +EN LA+ ++ RLS+QTHKF+ I Sbjct: 183 VF------IQPMDQNNQRLNDENNELAVKLALES-GARLSLQTHKFLNI 224 >gi|88809463|ref|ZP_01124971.1| possible organic radical activating enzyme [Synechococcus sp. WH 7805] gi|88786682|gb|EAR17841.1| possible organic radical activating enzyme [Synechococcus sp. WH 7805] Length = 208 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 100/218 (45%), Gaps = 34/218 (15%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F +LQGEG HAGR A F R +GC + C +CDT + Sbjct: 13 VVETFHSLQGEGLHAGRSAFFIRLAGCRV-----------GCSWCDTK----HSWPADSH 57 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-RGFEIAVETNGTIEP 124 + + L E + V+TGGEPL L QAL R + +ET+G ++P Sbjct: 58 PLRPIDSLATEAAAAASDGAAFVVITGGEPLHHNLDALAQALRSLRSLPLHLETSG-VDP 116 Query: 125 PQG-IDWICVSPKAGCDLK---IKGGQELKLVFPQVNVSPENYIGFDF-------ERFSL 173 G DWI +SPK + ++ ELK+V + P + + D + L Sbjct: 117 LSGDPDWITLSPKRHAPPRAELLRRCHELKVVVHE----PADLLFADVVAAQAPQATWLL 172 Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 QP G E LA+ ++ +WRLS+Q+HK++G+R Sbjct: 173 QP--GWESAEGQQLALDAARRDGRWRLSLQSHKWLGVR 208 >gi|322369255|ref|ZP_08043820.1| hypothetical protein ZOD2009_07199 [Haladaptatus paucihalophilus DX253] gi|320550987|gb|EFW92636.1| hypothetical protein ZOD2009_07199 [Haladaptatus paucihalophilus DX253] Length = 264 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/132 (40%), Positives = 70/132 (53%), Gaps = 19/132 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F +LQGEG AG +VF R SGCNL +C FCD+ + T R Sbjct: 30 INELFYSLQGEGTLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPTH-ARM 77 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 VD++ +E + + VLTGGEPL+ + V L+ L++RG+ VETNGTI Sbjct: 78 TVDEIVAEVESY------DANHIVLTGGEPLVHEESVTLLDRLSERGYHTTVETNGTIFR 131 Query: 125 PQGIDWICVSPK 136 ID VSPK Sbjct: 132 DAPIDLASVSPK 143 >gi|242238307|ref|YP_002986488.1| hypothetical protein Dd703_0856 [Dickeya dadantii Ech703] gi|242130364|gb|ACS84666.1| conserved hypothetical protein [Dickeya dadantii Ech703] Length = 224 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 104/241 (43%), Gaps = 49/241 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y I E+F TLQGEG G AVF R GC + C +CDT + Sbjct: 1 MPQYPINEMFQTLQGEGYFTGVPAVFIRLQGCPV-----------GCSWCDTKHTWEKLA 49 Query: 61 KGGRYNVDQLADLIEEQ-W--------ITGEKE----GRYCVLTGGEPLLQVDVPLIQAL 107 + + LA E W ++ +E R+ V+TGGEP + PL AL Sbjct: 50 ERQSSLAEVLAKTAESDVWGAADATEILSSMRELGYTARHVVITGGEPCIHDLTPLTLAL 109 Query: 108 NKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQ----------- 155 ++GF +ET+GT + W+ VSPK + ++GG + L Q Sbjct: 110 EQQGFSTQIETSGTHDVRCSPATWVTVSPK----VNMRGGMAVLLSALQRADEIKHPVAR 165 Query: 156 ---VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209 V+ D ++ +LQP+ EE T L I+ C WRLS+QTHK++ Sbjct: 166 ERDVDALDALLARLDDDKSRVVALQPVSQK--EEATRLCIATCIAR-NWRLSMQTHKYLN 222 Query: 210 I 210 I Sbjct: 223 I 223 >gi|225077247|ref|ZP_03720446.1| hypothetical protein NEIFLAOT_02302 [Neisseria flavescens NRL30031/H210] gi|224951391|gb|EEG32600.1| hypothetical protein NEIFLAOT_02302 [Neisseria flavescens NRL30031/H210] Length = 211 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 100/221 (45%), Gaps = 36/221 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 12 YRIVEIFESLQGEGWNTGMPAVFIRLGKCNL-----------ACSWCDTDYL-------- 52 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 ++ + L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 53 KFGMMSLSDILGR---LKTYTARNIIITGGEPTIQPHLDTLLNALKTEGYFLCIETNGLN 109 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVF--PQVNVSPENYIGFDFERFSLQP 175 P ID++ SPKA K I+ E+++V + E + + L P Sbjct: 110 PAPPQIDYVATSPKACYVAKYEFSCIEKADEVRIVADGDVIAFCQEMERKIRAQHYYLSP 169 Query: 176 --MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 DG +T I P W+LSVQTHK+ GI Sbjct: 170 CEQDGVMNIYDTIRQIGVLNSRPDAPVHWQLSVQTHKWAGI 210 >gi|32035298|ref|ZP_00135305.1| COG0602: Organic radical activating enzymes [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208571|ref|YP_001053796.1| hypothetical protein APL_1099 [Actinobacillus pleuropneumoniae L20] gi|190150424|ref|YP_001968949.1| hypothetical protein APP7_1155 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303253329|ref|ZP_07339478.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246015|ref|ZP_07528097.1| hypothetical protein appser1_12160 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248119|ref|ZP_07530147.1| hypothetical protein appser2_11000 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250350|ref|ZP_07532299.1| hypothetical protein appser4_11310 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307254996|ref|ZP_07536814.1| hypothetical protein appser9_12300 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259432|ref|ZP_07541157.1| hypothetical protein appser11_12290 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307263767|ref|ZP_07545373.1| hypothetical protein appser13_11780 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126097363|gb|ABN74191.1| hypothetical protein APL_1099 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189915555|gb|ACE61807.1| hypothetical protein APP7_1155 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648011|gb|EFL78218.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306852950|gb|EFM85173.1| hypothetical protein appser1_12160 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855296|gb|EFM87471.1| hypothetical protein appser2_11000 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857625|gb|EFM89732.1| hypothetical protein appser4_11310 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306861869|gb|EFM93845.1| hypothetical protein appser9_12300 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866368|gb|EFM98231.1| hypothetical protein appser11_12290 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306870888|gb|EFN02626.1| hypothetical protein appser13_11780 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 210 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 100/222 (45%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + I EIF +LQGEG + G +F R CNL C +CDT++ Sbjct: 11 FPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY--------N 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 Y +A ++E + ++TGGEP + ++ L+ G+ +A+ETNG Sbjct: 52 EYEKWSVAKILER---VKSYSAKNIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNGLK 108 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSP-----ENYIGFDFERFS 172 P+ ID+I SPK K I E+++V + +V E I + S Sbjct: 109 AVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVVDKGDVQSFCEQIETQITAEHYYLS 168 Query: 173 LQPMDGP--FLEENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211 +DG LE T L I + PKW+LS+QTHK +GI Sbjct: 169 PCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGIE 210 >gi|329119485|ref|ZP_08248170.1| radical SAM domain protein [Neisseria bacilliformis ATCC BAA-1200] gi|327464418|gb|EGF10718.1| radical SAM domain protein [Neisseria bacilliformis ATCC BAA-1200] Length = 212 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 101/221 (45%), Gaps = 36/221 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G A+F R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAIFVRLGKCNL-----------ACSWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 ++++ L++++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 54 KFSMMPLSEILGR---LKNYTARNIIITGGEPTIQPHLNTLLDALKNAGYRLCIETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175 P ID++ SPKA K I E+++V +S + R+ L P Sbjct: 111 PAPPQIDYVAASPKACYAAKYEKSCIAAADEVRIVADGDVISFCEALEQKIRARRYYLSP 170 Query: 176 --MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 +G +T I P W+LSVQTHK+ GI Sbjct: 171 CEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211 >gi|123967114|ref|YP_001012195.1| putative organic radical activating protein [Prochlorococcus marinus str. MIT 9515] gi|123201480|gb|ABM73088.1| possible organic radical activating enzyme [Prochlorococcus marinus str. MIT 9515] Length = 223 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 105/236 (44%), Gaps = 53/236 (22%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 E F +LQGEG H G+ A F R +GCN+ C +CDT ++ + Sbjct: 9 EKFHSLQGEGFHTGQSAFFIRLAGCNV-----------GCPWCDTK----HSWDKEKFPL 53 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG-------FEIAVETNG 120 + ++I E ++ + V+TGGEPL L QA+N+ +I +ET+G Sbjct: 54 ISIQEIINEIKRARKQGASFLVITGGEPLHHNLDNLCQAINEETSTENQSPIKIHIETSG 113 Query: 121 TIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFP-------------------QVNV 158 DWI +SPK K +K ELK++ Q + Sbjct: 114 VSNLSGSFDWITLSPKRHQPPKTYFLKNCNELKIIINDQKDIDFAIDIKQEIMNKYQNSS 173 Query: 159 SPENYIGFDFERFSLQPM---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 S +N+ D +++ LQP D F +L I + NP+W LS+QTHK++ I+ Sbjct: 174 STKNFYKLD-KKYYLQPAWQNDDGF-----SLTIDFIKNNPEWNLSLQTHKYLKIK 223 >gi|270264011|ref|ZP_06192279.1| hypothetical protein SOD_f02250 [Serratia odorifera 4Rx13] gi|270042204|gb|EFA15300.1| hypothetical protein SOD_f02250 [Serratia odorifera 4Rx13] Length = 223 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 104/233 (44%), Gaps = 39/233 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60 Y I E+F TLQGEG G A+F R GC + W + R D + ++ Sbjct: 3 YPINEMFQTLQGEGFFTGVPAIFIRLQGCPVGCSWCDTKHTWEKEANREVDMQRILVKTE 62 Query: 61 KG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G + +QL ++ +Q T R+ V+TGGEP + PL Q L + G+ +E Sbjct: 63 ESDAWGSASAEQLLAVMRQQGYTA----RHVVITGGEPCIYDLTPLTQLLEENGYGCQIE 118 Query: 118 TNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER------ 170 T+GT E W+ VSPK + ++GG +K++ + + E ER Sbjct: 119 TSGTHEIQCSATTWVTVSPK----VNMRGG--MKVLDQALQRADEVKHPVGRERDIEALD 172 Query: 171 -------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ EE T L I C WRLS+QTHK++ I Sbjct: 173 ALLATLHDEKPRIIALQPISQK--EEATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|240114982|ref|ZP_04729044.1| hypothetical protein NgonPID1_01797 [Neisseria gonorrhoeae PID18] gi|260441203|ref|ZP_05795019.1| hypothetical protein NgonDG_08991 [Neisseria gonorrhoeae DGI2] gi|268600650|ref|ZP_06134817.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268584781|gb|EEZ49457.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] Length = 212 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 104/227 (45%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ I R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 54 TFGMMSLSDILGRLKIYA---ARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I+ E+++ V+ + +GF + ER Sbjct: 111 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDVVGFCENMERKIRAH 164 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P DG +T I P W+LSVQTHK+ GI Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211 >gi|197122965|ref|YP_002134916.1| radical SAM protein [Anaeromyxobacter sp. K] gi|196172814|gb|ACG73787.1| Radical SAM domain protein [Anaeromyxobacter sp. K] Length = 210 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 104/229 (45%), Gaps = 55/229 (24%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF ++QGEG AGR VF RF+GC+L +C +CDT + G Sbjct: 3 VTEIFFSIQGEGSRAGRPCVFVRFTGCDL-----------RCGYCDTAYAFHGGA----- 46 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124 ++D+ A L E R+ LTGGEP+LQ ++P L + L RG+E+AVET+G Sbjct: 47 DMDRAAILAE----VARHPARFVCLTGGEPMLQRELPDLARDLVARGYEVAVETHGQ--- 99 Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENYIGF-----DFERFSLQPMDG 178 + +D + D+K G E+ F ++ + P + + F D R+S + + Sbjct: 100 -RPLDALPAEAIRVVDVKTPGSGEVTTDFAYLDRLQPHDEVKFVVCSEDDFRWSREVVRR 158 Query: 179 PFLEENTNLAISYCFQNPKW-------------------RLSVQTHKFI 208 LE + +S P W RLS+Q HK I Sbjct: 159 HALEGRVQVLLS-----PAWGQVAPRDLVRWMLESGLDARLSLQVHKVI 202 >gi|238761644|ref|ZP_04622619.1| hypothetical protein ykris0001_11220 [Yersinia kristensenii ATCC 33638] gi|238700158|gb|EEP92900.1| hypothetical protein ykris0001_11220 [Yersinia kristensenii ATCC 33638] Length = 223 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 103/234 (44%), Gaps = 41/234 (17%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60 Y I E+F TLQGEG G A+F R GC + W + R D + ++ Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKEADREVDMQRIMVKTA 62 Query: 61 KG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G + QL D+ +Q T R+ V+TGGEP + +PL L + G+ +E Sbjct: 63 ESDLWGTASEQQLLDIFRQQGYTA----RHVVITGGEPAIYDLLPLTSQLEQAGYSCQIE 118 Query: 118 TNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY------------- 163 T+GT E W+ VSPK + ++GG + V PQ + Sbjct: 119 TSGTHEVQCSATTWVTVSPK----VNMRGGLK---VLPQALQRADEIKHPVGRLRDIEAL 171 Query: 164 ------IGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + D +R +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 172 EVLLVTLTDDKKRIIALQPISQK--EDATKLCIETCIAK-NWRLSMQTHKYLNI 222 >gi|293397670|ref|ZP_06641876.1| conserved hypothetical protein [Neisseria gonorrhoeae F62] gi|291611616|gb|EFF40685.1| conserved hypothetical protein [Neisseria gonorrhoeae F62] Length = 241 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 104/227 (45%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 42 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 82 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 83 TFGMMSLSDILGR---LKTYAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLK 139 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I+ E+++ V+ + +GF + ER Sbjct: 140 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDAVGFCENMERKIRAH 193 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P DG +T I P W+LSVQTHK+ GI Sbjct: 194 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 240 >gi|251788459|ref|YP_003003180.1| hypothetical protein Dd1591_0822 [Dickeya zeae Ech1591] gi|247537080|gb|ACT05701.1| conserved hypothetical protein [Dickeya zeae Ech1591] Length = 223 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 108/235 (45%), Gaps = 43/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54 Y I E+F TLQGEG G AVF R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGFFTGVPAVFIRLQGCPV-----------GCSWCDTKHTWERLPDRQ 51 Query: 55 -----VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 + ++ + ++ +L+++ + G ++ V+TGGEP + PL QAL + Sbjct: 52 IPLADILVKSGESDAWSHSSSEELLQQMRLQG-YSAKHIVITGGEPCIHDLTPLTQALEQ 110 Query: 110 RGFEIAVETNGTIEPP-QGIDWICVSPK-------AGCDLKIKGGQELKL-VFPQVNVSP 160 +GF +ET+GT E W+ VSPK A D ++ E+K V + ++ Sbjct: 111 QGFSTQIETSGTHEVRCSSACWVTVSPKVNMRGGLAVLDQALRRADEIKHPVARERDIEA 170 Query: 161 ENYI--GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + D ++ +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 171 LDALLARLDDDKPRVVALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|329295553|ref|ZP_08252889.1| Radical SAM domain-containing protein [Plautia stali symbiont] Length = 223 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 105/235 (44%), Gaps = 41/235 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGRE---QDRLSAQCRFCDTDFVG 56 Y I E+F TLQGEG + G A+F R GC + W + + R + D Sbjct: 2 FYPINEMFQTLQGEGFYTGVPAIFIRLQGCPVGCSWCDTKHTWETRADLETSLGDILVKT 61 Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 ++ G + L + I+ Q T R+ V+TGGEP + PL +AL GF+ + Sbjct: 62 VESDAWGSADAATLIETIQRQGWTA----RHLVITGGEPAIFDLRPLTEALETAGFQCQI 117 Query: 117 ETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQV---------NVSPENYI-- 164 ET+GT E W+ VSPK + ++GG + V PQ V+ E + Sbjct: 118 ETSGTHEVHCSAATWVTVSPK----VNMRGGYD---VLPQALQRADEIKHPVARERDVEA 170 Query: 165 ------GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 G E+ +LQP+ E T L I C WRLS+QTHK++ I Sbjct: 171 LDALLAGLQDEKKRIVALQPISRG--EAATRLCIETCIVR-NWRLSMQTHKYLNI 222 >gi|291044537|ref|ZP_06570246.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291011431|gb|EFE03427.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] Length = 267 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 104/227 (45%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 68 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 109 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ I R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 110 -FGMMSLSDILGRLKIYA---ARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 165 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I+ E+++ V+ + +GF + ER Sbjct: 166 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDVVGFCENMERKIRAH 219 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P DG +T I P W+LSVQTHK+ GI Sbjct: 220 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 266 >gi|157369053|ref|YP_001477042.1| radical SAM domain-containing protein [Serratia proteamaculans 568] gi|157320817|gb|ABV39914.1| Radical SAM domain protein [Serratia proteamaculans 568] Length = 223 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 104/233 (44%), Gaps = 39/233 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60 Y I E+F TLQGEG G A+F R GC + W + R D + ++ Sbjct: 3 YPINEMFQTLQGEGFFTGVPAIFIRLQGCPVGCSWCDTKHTWEKEANREVDMQRILVKTE 62 Query: 61 KG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G + +QL +I +Q T R+ V+TGGEP + PL + L + G+ +E Sbjct: 63 ESDAWGSASAEQLLAVIRQQGYTA----RHVVITGGEPCIYDLTPLTELLEEHGYGCQIE 118 Query: 118 TNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER------ 170 T+GT E W+ VSPK + ++GG +K++ + + E ER Sbjct: 119 TSGTHEIQCSAKTWVTVSPK----VNMRGG--MKVLSQALQRADEVKHPVGRERDIEALD 172 Query: 171 -------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ EE T L I C WRLS+QTHK++ I Sbjct: 173 ALLATLHDEKPRIIALQPISQK--EEATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|296315126|ref|ZP_06865067.1| radical SAM domain protein [Neisseria polysaccharea ATCC 43768] gi|296838043|gb|EFH21981.1| radical SAM domain protein [Neisseria polysaccharea ATCC 43768] Length = 212 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 104/227 (45%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 +++ L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 54 TFSMMSLSDILGR---LKAYAARNIIITGGEPTIQPHLDALLDTLKAEGYFLCLETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I+ E+++ V+ + +GF + ER Sbjct: 111 PAPPQIDYVATSPKAYYAAKYEKSCIETADEVRI------VADGDVVGFCENMERKIRAR 164 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P DG +T I P W+LSVQTHK+ GI Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211 >gi|291514643|emb|CBK63853.1| Organic radical activating enzymes [Alistipes shahii WAL 8301] Length = 211 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 40/223 (17%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 ++ + E F T+QGEG HAG+ A F R GC++ CR+CD + Sbjct: 14 RMLPLVEDFYTIQGEGFHAGKPAYFIRLGGCDV-----------GCRWCDAKYTW----N 58 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 Y + +I+ + V+TGGEPLL L + L +RG +I +ET+G+ Sbjct: 59 PKLYPPTDVQTVIDR---AMSCPAQAIVITGGEPLLYPLGVLTETLRERGLQIFLETSGS 115 Query: 122 IEPPQGI-DWICVSPK---AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177 P G+ DW+C+SPK D + ELK++ E+ F++ + + Sbjct: 116 -HPFSGVFDWVCLSPKRRQPPLDEAFERADELKVIV-------ESEEDFEWAERNAARVG 167 Query: 178 GP---FLEENTNLA-------ISYCFQNPKWRLSVQTHKFIGI 210 G FL+ ++A + Y +P+W +S+QTHK++ I Sbjct: 168 GKCLLFLQPEWSVAEKVMPAIVEYAKAHPQWNISIQTHKYMHI 210 >gi|153000640|ref|YP_001366321.1| radical activating enzyme [Shewanella baltica OS185] gi|151365258|gb|ABS08258.1| conserved hypothetical protein [Shewanella baltica OS185] Length = 222 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 32/229 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58 Y + E+F T+QGEG G A+F R GC + W +Q D L A + + + Sbjct: 3 YPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEAN-KVTPEQVISVD 61 Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 GT GR+ D A + + R+ V+TGGEP + L + L+ +GF +ET Sbjct: 62 GTI-GRW-ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLRELTETLHSQGFATQIET 119 Query: 119 NGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENYIG------ 165 +GT + D W+ VSPK + +KGG + L + N ++ EN+I Sbjct: 120 SGTFDINCADDTWVTVSPK----VNMKGGYKVLAQALNRANEIKHPIATENHIAELDELL 175 Query: 166 ----FDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 176 QDIDISTKAICLQPISQK--PRATELAMKVCITR-NWRLSIQTHKYLNI 221 >gi|188026339|ref|ZP_02961731.2| hypothetical protein PROSTU_03780 [Providencia stuartii ATCC 25827] gi|188022533|gb|EDU60573.1| hypothetical protein PROSTU_03780 [Providencia stuartii ATCC 25827] Length = 230 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 104/238 (43%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I EIF TLQGEG G AVF R GC + W E S D Sbjct: 10 YPINEIFQTLQGEGVFTGVPAVFIRLQGCPVGCSWCDTKHTWEKEE----SKATTLGDIA 65 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + + +L +L+++Q T ++ V+TGGEP + +PL L +G++ Sbjct: 66 LKTVDTDTWALADSHELINLMKKQGYT----AKHIVITGGEPCIYDLLPLTCELENQGYQ 121 Query: 114 IAVETNGTIEPPQGID--WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER- 170 +ET+GT P Q D W+ VSPK G +KGG L+++ +N + E E+ Sbjct: 122 CQIETSGTY-PIQCSDKTWVTVSPKVG----MKGG--LQVLTESINRANEIKHPVAREKD 174 Query: 171 ------------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ L T L I C WRLS+QTHK++ I Sbjct: 175 IEELDKLLAKRTEKHAPVVALQPISQKSLA--TKLCIDTCIAR-NWRLSIQTHKYLNI 229 >gi|85058492|ref|YP_454194.1| hypothetical protein SG0514 [Sodalis glossinidius str. 'morsitans'] gi|84779012|dbj|BAE73789.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 223 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 104/233 (44%), Gaps = 39/233 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y + EIF TLQGEG G A+F R GC + W E +R++A + Sbjct: 3 YPLNEIFQTLQGEGYFTGVPAIFIRLQGCPVGCSWCDTKHTWQQDEAERVTAG----EIP 58 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 ++ +++ L+ +Q T R+ V+TGGEP L +PL L ++GF Sbjct: 59 LKTADSSRWASITAEEIIALMVKQGWTA----RHVVITGGEPCLHDLMPLTHTLEQQGFS 114 Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCD-----LKIKGGQELKLVFPQVNVSPENYIG 165 +ET+GT E PQ W+ VSPK L G+ ++ P S + + Sbjct: 115 CQIETSGTQEIHCTPQ--TWVTVSPKINMRGGLPVLAQALGRSDEIKHPAARQSDIDELD 172 Query: 166 ------FDFER--FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 D ++ +LQP+ E T L I C WRLS+QTHK++ I Sbjct: 173 ALLATLHDTKQRVIALQPISQK--EAATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|117923944|ref|YP_864561.1| radical SAM protein [Magnetococcus sp. MC-1] gi|117607700|gb|ABK43155.1| Radical SAM domain protein [Magnetococcus sp. MC-1] Length = 204 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 68/215 (31%), Positives = 97/215 (45%), Gaps = 24/215 (11%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y+I +IF ++QGE H G VF RFSGC L +C +CD + + Q K Sbjct: 5 YAICDIFHSIQGEATHTGLPMVFIRFSGCPL-----------RCSWCD-EPLHRQADKAE 52 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT- 121 + QL I E +LTGGEPL+ + L+ +G+ IA+ET G Sbjct: 53 HLTLTQLRSRILEL----APHTTNLLLTGGEPLMAPHLDRLVDYFKDQGYWIAMETCGEG 108 Query: 122 IEPPQGIDWICVSPKAGCDLKI-KGGQELKLVF--PQVNVSPENYIGFDFERFSLQPMDG 178 E P +DW+ +SPK + + E+KLV E LQP Sbjct: 109 GEIPAEVDWVTLSPKNQLPQSLYERADEVKLVLGADADQSDKERLTQCHHPNLWLQPRAL 168 Query: 179 PFLEENTNLAISYCF---QNPKWRLSVQTHKFIGI 210 P + +A+ Y + WRLS+QTHK+IG+ Sbjct: 169 PTGPDPMAVALCYRWALESGGAWRLSLQTHKYIGV 203 >gi|238786213|ref|ZP_04630161.1| hypothetical protein yberc0001_11680 [Yersinia bercovieri ATCC 43970] gi|238712877|gb|EEQ04941.1| hypothetical protein yberc0001_11680 [Yersinia bercovieri ATCC 43970] Length = 223 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 106/234 (45%), Gaps = 39/234 (16%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59 LY I E+F TLQGEG G A+F R GC + W + R D + ++ Sbjct: 2 LYPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKEADREVDMQRIMVKT 61 Query: 60 TKG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 + G + QL + +Q T R+ V+TGGEP + +PL L + G+ + Sbjct: 62 AESDAWGSASEQQLLAIFSQQGYT----ARHVVITGGEPAIYDLLPLTSVLEQAGYSCQI 117 Query: 117 ETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE-------------- 161 ET+GT E W+ VSPK +K++GG LK++ + + E Sbjct: 118 ETSGTHEVQCSAATWVTVSPK----VKMRGG--LKILPQALQRADEIKHPVGRLRDIEAL 171 Query: 162 ----NYIGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + D +R +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 172 EVLLATLHDDKKRIIALQPISQK--DDATKLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|305665081|ref|YP_003861368.1| hypothetical protein FB2170_02240 [Maribacter sp. HTCC2170] gi|88709833|gb|EAR02065.1| hypothetical protein FB2170_02240 [Maribacter sp. HTCC2170] Length = 210 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 37/220 (16%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + E F T+QGEG H G A F R GC++ C +CD + Sbjct: 15 MLPLMEEFYTIQGEGYHKGTAAYFVRVGGCDV-----------GCHWCDVK----ESWDA 59 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + ++ + V+TGGEPL PL QAL + +ET+G Sbjct: 60 ETHPPTDIKSIV----VNAAVYSDTIVVTGGEPLTWDMGPLTQALKSKNINTHIETSGAY 115 Query: 123 EPPQGIDWICVSPKAG---CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS------- 172 + DWIC+SPK L + ELK++ V ++ + F E+ + Sbjct: 116 KLTGDWDWICLSPKKNKLPSGLIYEKAHELKVI-----VYNKHDLIFAEEQAAQVGKNCI 170 Query: 173 --LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP + ++ + + Y +NPKW++S+QTHK++ I Sbjct: 171 LYLQP-EWSVRDKVVPMIVEYVMKNPKWKVSLQTHKYLNI 209 >gi|238797157|ref|ZP_04640659.1| hypothetical protein ymoll0001_8670 [Yersinia mollaretii ATCC 43969] gi|238719004|gb|EEQ10818.1| hypothetical protein ymoll0001_8670 [Yersinia mollaretii ATCC 43969] Length = 229 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 103/237 (43%), Gaps = 41/237 (17%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGI 57 + LY I E+F TLQGEG G A+F R GC + W + R D + + Sbjct: 6 LMLYPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKEADREVDMQRIMV 65 Query: 58 QGTKG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114 + + G QL D+ +Q T R+ V+TGGEP + PL L + G+ Sbjct: 66 KTAESDAWGSATEQQLLDIFSQQGYT----ARHVVITGGEPSIYDLRPLTSLLEQGGYSC 121 Query: 115 AVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY---------- 163 +ET+GT E W+ VSPK + ++GG + V PQ + Sbjct: 122 QIETSGTHEVQCSATTWVTVSPK----VNMRGGLK---VLPQALQRADEIKHPVGRLRDI 174 Query: 164 ---------IGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + D +R +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 175 EALEALLATLHDDKKRIIALQPISQK--EDATKLCIETCIAK-NWRLSMQTHKYLNI 228 >gi|294787822|ref|ZP_06753066.1| radical SAM domain protein [Simonsiella muelleri ATCC 29453] gi|294484115|gb|EFG31798.1| radical SAM domain protein [Simonsiella muelleri ATCC 29453] Length = 205 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 56/232 (24%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 ++ I EIF TLQGEG + G +VF RF CNL C +CDT++ Sbjct: 5 IFRIVEIFETLQGEGYNTGMPSVFIRFGKCNL-----------ACHWCDTNY-------- 45 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 ++ + L ++++ + + + ++TGGEP +Q + L+ L G+ IA+ETNG Sbjct: 46 QQFEMMTLTQIMDQVY---DYSAKNIIITGGEPTIQPQLEILLNRLKSEGYFIAIETNGL 102 Query: 122 IEPPQGIDWICVSPK-----AGCDLKIKGGQELKLVFPQVNVSPENYIGF--------DF 168 P+ ID+I SPK A + E+++V V ++ F Sbjct: 103 RAVPEQIDYIATSPKRLYANAYDKTCLSAADEVRIV-----VDSDDIFSFCEIIEQKIRA 157 Query: 169 ERFSLQPMDGPFLEENTNLAISYCF----------QNPKWRLSVQTHKFIGI 210 +R+ L P E+N + I P W+LS+QTHK GI Sbjct: 158 KRYYLSP-----CEQNGEMNILATITLLGKLNARPNQPHWQLSIQTHKLCGI 204 >gi|90579565|ref|ZP_01235374.1| putative organic radical activating enzyme [Vibrio angustum S14] gi|90439139|gb|EAS64321.1| putative organic radical activating enzyme [Vibrio angustum S14] Length = 222 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 103/241 (42%), Gaps = 53/241 (21%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL----------WSGREQDRLSAQCRFCDT 52 +Y I E+F T+QGEG G A+F R C + W+ QD +S T Sbjct: 1 MYKINEVFETIQGEGVFTGVPAIFVRLQVCPVGCSWCDTKQTWTAEPQDLVSLDQIMAKT 60 Query: 53 DFVGIQGTKGGRYNVDQ--LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110 G N+D + L+++Q T ++ V+TGGEP + PL QAL + Sbjct: 61 ------GDSPLWTNLDANGVVQLLQDQKYTA----KHVVITGGEPCIYDLRPLTQALEEA 110 Query: 111 GFEIAVETNGTIEPPQGID-WICVSPKAGCDLKI--------------------KGGQEL 149 GF +ET+GT E + W+ VSPK K+ K ++L Sbjct: 111 GFNCQIETSGTSEIQTSDNTWVTVSPKINMKAKLPVLASSLARANEIKHPVGTSKDIEQL 170 Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209 + V + P+ I +LQP+ T L I C Q WRLS+QTHK++ Sbjct: 171 DALIDGVTLKPDVTI-------ALQPISQK--TRATELCIETCIQR-NWRLSIQTHKYLA 220 Query: 210 I 210 I Sbjct: 221 I 221 >gi|227329734|ref|ZP_03833758.1| hypothetical protein PcarcW_21303 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 223 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 31/229 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58 Y I E+F TLQGEG G AVF R GC + W + D+L+ + D V + Sbjct: 3 YPINEMFQTLQGEGYFTGVPAVFVRLQGCPVGCSWCDTKHTWDKLAERETSLDQVLVKTE 62 Query: 59 GTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G + D + L+ ++ T R+ V+TGGEP + PL L K+GF +E Sbjct: 63 ESDAWGAASADDILALMAQEGYTA----RHIVITGGEPCIHDLAPLTLQLEKQGFSCQIE 118 Query: 118 TNGTIE---PPQGIDWICVSPKAG-------CDLKIKGGQELKL-VFPQVNVSPENYI-- 164 T+GT + P+ W+ VSPK D ++ E+K V + ++ + + Sbjct: 119 TSGTHDVRCSPKT--WVTVSPKVNMRGGMKVLDQALQRADEIKHPVARERDIEALDALLA 176 Query: 165 GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 D ++ +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 177 RLDDDKPRIVALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|217973439|ref|YP_002358190.1| radical activating enzyme [Shewanella baltica OS223] gi|217498574|gb|ACK46767.1| radical activating enzyme [Shewanella baltica OS223] Length = 222 Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 106/229 (46%), Gaps = 32/229 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58 Y + E+F T+QGEG G A+F R GC + W +Q D L + + + Sbjct: 3 YPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEVN-KVMPEQVISVD 61 Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 GT G R+ D A + + R+ V+TGGEP + L + L+ +GF +ET Sbjct: 62 GTIG-RW-ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLCELTETLHSQGFATQIET 119 Query: 119 NGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENYI------- 164 +GT + D W+ VSPK + +KGG + L + N ++ EN+I Sbjct: 120 SGTFDINCADDTWVTVSPK----VNMKGGYKVLTQALNRANEIKHPIATENHIAELDELL 175 Query: 165 -GFDF--ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 G D + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 176 QGIDISTKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221 >gi|308187939|ref|YP_003932070.1| hypothetical protein Pvag_2457 [Pantoea vagans C9-1] gi|308058449|gb|ADO10621.1| Uncharacterized protein ygcF [Pantoea vagans C9-1] Length = 223 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 103/236 (43%), Gaps = 43/236 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGRE---QDRLSAQCRFCDTDFVG 56 Y I E+F TLQGEG + G A+F R GC + W + + R + D Sbjct: 2 FYPINEMFQTLQGEGYYTGVPAIFIRLQGCPVGCSWCDTKHTWEKRADRETSLGDILIKT 61 Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 ++ G + L IE+Q T R+ V+TGGEP + PL L + GF+ + Sbjct: 62 VESDAWGDADASTLLRSIEQQGWT----ARHVVITGGEPAIYDLRPLTTILEQHGFQCQI 117 Query: 117 ETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER----- 170 ET+GT E W+ VSPK + ++GG + V PQ +S + I R Sbjct: 118 ETSGTHEIHCSEQTWVTVSPK----VNMRGGYD---VLPQA-LSRADEIKHPVARQRDVD 169 Query: 171 ----------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 170 ALDGLLAGIDDTKARIIALQPISRK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|332036527|gb|EGI72995.1| queuosine biosynthesis QueE radical SAM [Pseudoalteromonas haloplanktis ANT/505] Length = 221 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 106/240 (44%), Gaps = 52/240 (21%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD--------- 53 +Y I E+F T+QGE G ++F R GC + C +CDT Sbjct: 1 MYKINEVFETIQGEASFTGTPSIFLRLQGCPV-----------GCSWCDTKQTWDVDNVY 49 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKE----GRYCVLTGGEPLLQVDVPLIQALNK 109 V + T + + D A+ EQ + + ++ V+TGGEP + P+ L++ Sbjct: 50 KVSLDETVEKKADSDHWANASAEQILALFQSRGYTAKHVVITGGEPCMFDLNPVCNLLHE 109 Query: 110 RGFEIAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSP 160 GF +ET+GT E P Q W+ VSPK + ++GG E L + N V+ Sbjct: 110 HGFSTQIETSGTFEILAPEQ--TWVTVSPK----INMRGGYEVLTSTMKRANEIKHPVAM 163 Query: 161 ENYI----------GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + ++ G + + LQP+ T LAI C WRLS+Q HK++GI Sbjct: 164 QKHVEELEELFAKTGVNPKLVYLQPISQKV--SATKLAIDTCIAK-NWRLSIQVHKYLGI 220 >gi|86157724|ref|YP_464509.1| radical SAM family protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85774235|gb|ABC81072.1| Radical SAM [Anaeromyxobacter dehalogenans 2CP-C] Length = 210 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 104/229 (45%), Gaps = 55/229 (24%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF ++QGEG AGR VF RF+GC+L +C +CDT + GG Sbjct: 3 VTEIFFSIQGEGSRAGRPCVFVRFTGCDL-----------RCGYCDTAY----AFHGG-V 46 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124 ++D+ A L E R+ LTGGEP+LQ ++P L + L RG+E+AVET+G Sbjct: 47 DMDRAAVLAE----VARHPARFVCLTGGEPMLQRELPDLARDLVARGYEVAVETHGQ--- 99 Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENYIGF-----DFERFSLQPMDG 178 + +D + D+K G E+ F ++ + P + + F D R+S + + Sbjct: 100 -RPLDALPAEAIRVVDVKTPGSGEVTTDFAYLDRLQPHDEVKFVVCSEDDFRWSREVVRR 158 Query: 179 PFLEENTNLAISYCFQNPKW-------------------RLSVQTHKFI 208 LE + S P W RLS+Q HK I Sbjct: 159 HALEGRVQVLFS-----PAWGQVAPRDLVRWMLESGLDARLSLQVHKVI 202 >gi|87300560|ref|ZP_01083402.1| possible organic radical activating enzyme [Synechococcus sp. WH 5701] gi|87284431|gb|EAQ76383.1| possible organic radical activating enzyme [Synechococcus sp. WH 5701] Length = 218 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 102/227 (44%), Gaps = 39/227 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F +LQGEG HAGR A F R +GC S C +CDT + Sbjct: 10 VVETFHSLQGEGVHAGRSAFFIRLAGC-----------SVGCSWCDTK----HSWPADAH 54 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK------RGFEIAVETN 119 + + DL + + + V+TGGEPL PL +AL + + +ET+ Sbjct: 55 PLCRFQDLAASAALAAAEGAAFVVITGGEPLHHNLDPLCEALRQGSGAGPSPLPLHLETS 114 Query: 120 GTIEPPQG-IDWICVSPK----------AGC-DLKIKGGQELKLVFPQ---VNVSPENYI 164 G ++P G +WI +SPK A C +LK+ + L F + V + Sbjct: 115 G-VDPLSGRFEWITLSPKRHRPPTAELLAACHELKVVIHEIADLAFAETMAAAVRSACPV 173 Query: 165 GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + LQP G LA+ + +NP WRLS+Q+HK++G+R Sbjct: 174 KGALPQLLLQPGWGS--AAGQELAVQHVRRNPAWRLSLQSHKWLGVR 218 >gi|325954686|ref|YP_004238346.1| radical SAM protein [Weeksella virosa DSM 16922] gi|323437304|gb|ADX67768.1| Radical SAM domain protein [Weeksella virosa DSM 16922] Length = 215 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 97/222 (43%), Gaps = 39/222 (17%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 +L + E F TLQGEG +AG A F R GC++ C +CD + Sbjct: 19 RLLPVMEHFYTLQGEGAYAGVAAYFIRLGGCDV-----------GCHWCDVK----ESWD 63 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + + +A L +E + ++TGGEPL+ L L+K G I +ET+G Sbjct: 64 AEIHPLTDIATLAKE----AAAICKTIIITGGEPLMWDLTFLTSELHKHGANIHIETSGA 119 Query: 122 IEPPQGIDWICVSPKAG---CDLKIKGGQELKLVF----------PQVNVSPENYIGFDF 168 IDW+ +SPK + + ELK++ Q +N + + Sbjct: 120 YPLTGEIDWVTLSPKKTKLPVESIYQQANELKMIIYNQHDFTFAEEQAAKVKDNCLLYLQ 179 Query: 169 ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +S + P L + + QNPKWR++VQTHK++ I Sbjct: 180 VEWSKRDSMSPKL-------VEFIKQNPKWRITVQTHKYLDI 214 >gi|261364119|ref|ZP_05977002.1| radical SAM domain protein [Neisseria mucosa ATCC 25996] gi|288567697|gb|EFC89257.1| radical SAM domain protein [Neisseria mucosa ATCC 25996] Length = 212 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 99/221 (44%), Gaps = 36/221 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 ++ + L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 54 KFGMMSLSDILGR---LKTYTARNIIITGGEPTIQPHLDTLLDALKAEGYFLCIETNGLK 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS----PENYIGFDFERFSL 173 P ID++ SPKA K I E+++V V+ E I + S Sbjct: 111 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRIVADGDVVAFCENMERKIRARYYYLSP 170 Query: 174 QPMDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 +G +T I P W+LSVQTHK+ GI Sbjct: 171 CEQNGAMNIYDTIHQIGILNSRPDAPVHWQLSVQTHKWAGI 211 >gi|24374045|ref|NP_718088.1| radical activating enzyme [Shewanella oneidensis MR-1] gi|24348519|gb|AAN55532.1|AE015692_2 radical activating enzyme [Shewanella oneidensis MR-1] Length = 222 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 104/234 (44%), Gaps = 42/234 (17%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL----------WSGREQDRLSAQCRFCDTD 53 Y + E+F T+QGEG G A+F R GC + W E +++S + Sbjct: 3 YPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDLLETNKVSPE------Q 56 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + + GT GR+ LIE G R+ V+TGGEP + L L++ GF Sbjct: 57 VITVDGTV-GRWANHTAQSLIEAFHAKG-YTARHVVITGGEPCMYDLHELTHMLHRAGFA 114 Query: 114 IAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENYIGF 166 +ET+GT E D W+ VSPK + +KGG L + N ++ +N+I Sbjct: 115 TQIETSGTFEVKCDKDTWVTVSPK----VNMKGGYPVLAQALNRANEIKHPIATQNHIDE 170 Query: 167 DFERFS----------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E S LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 171 LDELLSDIDVSAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221 >gi|16120216|ref|NP_395804.1| hypothetical protein VNG6305C [Halobacterium sp. NRC-1] gi|169237476|ref|YP_001690680.1| hypothetical protein OE5197R [Halobacterium salinarum R1] gi|10584342|gb|AAG20939.1| Vng6305c [Halobacterium sp. NRC-1] gi|167728703|emb|CAP15547.1| hypothetical protein OE5197R [Halobacterium salinarum R1] Length = 257 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/132 (41%), Positives = 68/132 (51%), Gaps = 18/132 (13%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F +LQGEG AG +VF R SGCNL +C FCD+ + T Sbjct: 22 INELFYSLQGEGKLAGTPSVFVRTSGCNL-----------RCWFCDSYHTSWEPTH-ATM 69 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 +VD D+I E + + + VLTGGEPLL D V L+ L G+ VETNGTI Sbjct: 70 SVD---DIIAE--VQSYEHADHVVLTGGEPLLHDDAVVLLDRLAALGYHTTVETNGTIHR 124 Query: 125 PQGIDWICVSPK 136 ID VSPK Sbjct: 125 DAPIDLASVSPK 136 >gi|120598962|ref|YP_963536.1| radical activating enzyme [Shewanella sp. W3-18-1] gi|120559055|gb|ABM24982.1| radical activating enzyme [Shewanella sp. W3-18-1] gi|319426518|gb|ADV54592.1| Radical SAM domain protein [Shewanella putrefaciens 200] Length = 222 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 103/231 (44%), Gaps = 36/231 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58 Y + E+F T+QGEG G A+F R GC + W +Q D L A + + + Sbjct: 3 YPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEAN-KVSPEQVITVD 61 Query: 59 GTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 GT G + D L + T R+ V+TGGEP + L + L+ +GF + Sbjct: 62 GTIGRWAEHTADSLIAAFNAEGFTA----RHIVITGGEPCMYDLRELTETLHSQGFATQI 117 Query: 117 ETNGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENY------ 163 ET+GT E + W+ VSPK + +KGG L + N ++ EN+ Sbjct: 118 ETSGTFEVNCADNTWVTVSPK----VNMKGGYPVLAQALNRANEIKHPIATENHIDELDE 173 Query: 164 ----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 I + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 174 LLQDIDISAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLDI 221 >gi|119469471|ref|ZP_01612375.1| queC protein [Alteromonadales bacterium TW-7] gi|119447006|gb|EAW28276.1| queC protein [Alteromonadales bacterium TW-7] Length = 221 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 105/240 (43%), Gaps = 52/240 (21%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD--------- 53 +Y I E+F T+QGE G ++F R GC + C +CDT Sbjct: 1 MYKINEVFETIQGEASFTGTPSIFLRLQGCPV-----------GCSWCDTKQTWDVDNVY 49 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKE----GRYCVLTGGEPLLQVDVPLIQALNK 109 V + T + + D AD EQ + K ++ V+TGGEP + + + L+ Sbjct: 50 KVSLDETVEKKADSDHWADASAEQVLELFKSRGYTAKHVVITGGEPCMYDLNQVCKLLHD 109 Query: 110 RGFEIAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSP 160 GF +ET+GT E P Q W+ VSPK + ++GG E L + N V+ Sbjct: 110 NGFTTQIETSGTFEILAPEQ--TWVTVSPK----INMRGGYEVLTSAMKRANEIKHPVAM 163 Query: 161 ENYI----------GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + ++ G + + LQP+ T LAI C WRLS+Q HK++GI Sbjct: 164 QKHVEELEELFAKTGVNPKLVYLQPISQKV--SATKLAIDTCIAK-NWRLSIQVHKYLGI 220 >gi|319639356|ref|ZP_07994107.1| NrdG protein [Neisseria mucosa C102] gi|317399540|gb|EFV80210.1| NrdG protein [Neisseria mucosa C102] Length = 211 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 99/221 (44%), Gaps = 36/221 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 12 YRIVEIFESLQGEGWNTGMPAVFIRLGKCNL-----------ACSWCDTDYL-------- 52 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 ++ + L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 53 KFGMMSLSDILGR---LKTYTARNIIITGGEPTIQPHLDTLLNALKAEGYFLCIETNGLN 109 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVF--PQVNVSPENYIGFDFERFSLQP 175 P ID++ SPKA K I+ E+++V + E + L P Sbjct: 110 PAPPQIDYVATSPKACYAAKYEKSCIEKADEVRIVADGEVIAFCQEMERKIRARHYYLSP 169 Query: 176 --MDGPFLEENTNLAI----SYCFQNPKWRLSVQTHKFIGI 210 DG +T I S W+LSVQTHK+ GI Sbjct: 170 CEQDGAMNIYDTIRQIGVLNSRADAPVHWQLSVQTHKWAGI 210 >gi|300775377|ref|ZP_07085239.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Chryseobacterium gleum ATCC 35910] gi|300506117|gb|EFK37253.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Chryseobacterium gleum ATCC 35910] Length = 209 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 101/229 (44%), Gaps = 53/229 (23%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 K+ + E F TLQGEG H G+ A F R GC++ C +CD Sbjct: 13 KMLPVMEHFYTLQGEGAHTGKAAYFIRLGGCDV-----------GCHWCDV--------- 52 Query: 62 GGRYNVD-QLADLIEEQWITGEKEGRYC---VLTGGEPLL-QVDVPLIQALNKRGFEIAV 116 + + D +L L+ + I E R+C VLTGGEPL+ +D+ L L + G I + Sbjct: 53 --KESWDPELHPLMNAEEI-AETAARHCKTIVLTGGEPLMWNLDI-LTSKLKELGCTIHI 108 Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176 ET+G +DWI +SPK K G + ++ + N I F+ F+ Sbjct: 109 ETSGAYPMSGHLDWITLSPK-------KTGLPKEEIYQKANEL--KVIIFNHHDFTFAQE 159 Query: 177 DGPFLEENTNLAI---------------SYCFQNPKWRLSVQTHKFIGI 210 + EN L + + ++P+W+ SVQTHK++ I Sbjct: 160 QAAKVSENCKLYLQSEWSKRNDMYPKITDFILEHPEWQASVQTHKYLNI 208 >gi|238758186|ref|ZP_04619365.1| hypothetical protein yaldo0001_25950 [Yersinia aldovae ATCC 35236] gi|238703516|gb|EEP96054.1| hypothetical protein yaldo0001_25950 [Yersinia aldovae ATCC 35236] Length = 225 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 104/233 (44%), Gaps = 39/233 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60 Y I E+F TLQGEG G A+F R GC + W + R D + ++ Sbjct: 5 YPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKEADREVDMQRIMVKTA 64 Query: 61 KG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G + QL DL +Q T R+ V+TGGEP + PL L + G+ +E Sbjct: 65 ESDAWGSASEQQLLDLFIQQGYT----ARHVVITGGEPAIYDLFPLTSQLEQAGYRCQIE 120 Query: 118 TNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE--------------- 161 T+GT E W+ VSPK + ++GG LK++ + + E Sbjct: 121 TSGTHEVRCSATTWVTVSPK----VNMRGG--LKVLPQALERADEIKHPVGRLRDIEALE 174 Query: 162 ---NYIGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + D +R +LQP+ +E T L I C WRLS+QTHK++ I Sbjct: 175 ALLETLTDDKKRIIALQPISQK--DEATKLCIETCIAR-NWRLSMQTHKYLNI 224 >gi|238650659|ref|YP_002916511.1| queuosine biosynthesis protein [Rickettsia peacockii str. Rustic] gi|238624757|gb|ACR47463.1| queuosine biosynthesis protein [Rickettsia peacockii str. Rustic] Length = 225 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 44/227 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 ++ IF T+QGEG G A+F R GCNL C FCDT+F Sbjct: 20 VQSIFKTIQGEGIFVGCPAIFIRLGGCNLA-----------CNFCDTEFEAFD-----LV 63 Query: 66 NVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122 ++D++ + +E + EK V+TGGEP+ Q L Q L R ++ +ETNGT+ Sbjct: 64 DIDKILNKVESLALNSKNEKSINLVVITGGEPMRQPIELLCQKLLDRDVKVQIETNGTLY 123 Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN----VSPENYI-----------GF 166 P+ + IC SPK G K ++L P+++ + +N + + Sbjct: 124 RSLPKEVSIIC-SPKVGKTSYSKIREDL---LPKISAVKFIVAKNILEYSLIPEVGQTSY 179 Query: 167 DFERFSLQPMDGP---FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + F +QPMD EN LA+ ++ RLS+QTHKF+ I Sbjct: 180 NIPVF-IQPMDQNNQRLNGENNELAVKLALES-GTRLSLQTHKFLNI 224 >gi|113953027|ref|YP_732046.1| organic radical activating protein [Synechococcus sp. CC9311] gi|113880378|gb|ABI45336.1| possible organic radical activating enzyme [Synechococcus sp. CC9311] Length = 202 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 98/218 (44%), Gaps = 34/218 (15%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F +LQGEG H GR A F R +GC++ CR+CDT + R Sbjct: 7 VVETFHSLQGEGLHTGRSAFFIRLAGCDV-----------GCRWCDTKHSWPADSHPKRL 55 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-IAVETNGTIEP 124 + DL E E + V+TGGEPL L A+ + + +ET+G Sbjct: 56 ----VKDLAIEATSAAETGAAFVVITGGEPLHHNLDELTAAIRSGCSQPVHLETSGVDRL 111 Query: 125 PQGIDWICVSPK-----------AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173 DWI +SPK A +LK+ + L+F +V + + L Sbjct: 112 SGAPDWITLSPKRHKPPRQDVVQACHELKVVVHEPADLLFAEVVAAQAPQAN-----WLL 166 Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 QP G +E LA+ ++ +WRLS+Q+HK++G+R Sbjct: 167 QP--GWDCKEGLQLAVGKVQKDQRWRLSMQSHKWLGVR 202 >gi|55378864|ref|YP_136714.1| hypothetical protein rrnAC2164 [Haloarcula marismortui ATCC 43049] gi|55231589|gb|AAV47008.1| unknown [Haloarcula marismortui ATCC 43049] Length = 260 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/132 (40%), Positives = 67/132 (50%), Gaps = 19/132 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F +LQGEG AG +VF R SGCNL +C FCD+ + T + Sbjct: 26 INELFQSLQGEGRLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPTHDW-F 73 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEP 124 VD + IEE + + VLTGGEPL+ L+ L RG+ VETNGT+ P Sbjct: 74 TVDDVLAAIEEY------DANHVVLTGGEPLIHDSSEDLLARLTDRGYHTTVETNGTVVP 127 Query: 125 PQGIDWICVSPK 136 ID VSPK Sbjct: 128 DAPIDLASVSPK 139 >gi|319776568|ref|YP_004139056.1| methyltransferase [Haemophilus influenzae F3047] gi|317451159|emb|CBY87392.1| Predicted methyltransferase [Haemophilus influenzae F3047] Length = 209 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 105/220 (47%), Gaps = 35/220 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 ++I EIF +LQGEG + G +VF RF CNL C +CDT + + Sbjct: 11 FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 R++V Q+ + + + ++TGGEP + ++ L++ G+ +A+ETNG Sbjct: 55 RWSVSQILEKVR------SFSSKNIIITGGEPTIVPEIEYLLEQFKSDGYFLAIETNGLK 108 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175 P ID+I SPK+ K I E+++V S I + + L P Sbjct: 109 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 168 Query: 176 --MDGP--FLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210 +DG LE T L ++ PKW+LS+QTHK IGI Sbjct: 169 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGI 208 >gi|221135470|ref|ZP_03561773.1| organic radical activating protein [Glaciecola sp. HTCC2999] Length = 227 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 105/236 (44%), Gaps = 45/236 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT---------DF 54 Y I EIF ++QGEG + G ++F R GC + C +CDT D Sbjct: 7 YPINEIFESIQGEGSYTGVPSIFIRLQGCPVG-----------CPWCDTQHTWKVDTDDQ 55 Query: 55 VGI-----QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 + + + + + + L+ E I G ++ V+TGGEP + VPL + L Sbjct: 56 IPVVQLREKSADAPTHALMNVTALLHEYEIRGYL-AKHVVITGGEPAMHDLVPLTEVLLS 114 Query: 110 RGFEIAVETNGTIEPPQGID-WICVSPKAGC--------DLKIKGGQELKLVFPQVNVSP 160 +GF + +ET+GT D ++ VSPK ++ + + V Q +V Sbjct: 115 KGFSVQIETSGTFALRCADDVYVTVSPKIDMPGKYPILPEVMARANEIKHAVAMQKHV-- 172 Query: 161 ENYIGFDFERFSLQPMDGPFLE------ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + ER +Q +L+ T LA+ C + WRLS+QTHKFIGI Sbjct: 173 -DELKLLLERAPIQTNTLIYLQPISQQARATQLAVETCIKE-NWRLSLQTHKFIGI 226 >gi|146292953|ref|YP_001183377.1| radical activating enzyme [Shewanella putrefaciens CN-32] gi|145564643|gb|ABP75578.1| radical activating enzyme [Shewanella putrefaciens CN-32] Length = 222 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 103/231 (44%), Gaps = 36/231 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58 Y + E+F T+QGEG G A+F R GC + W +Q D L A + + + Sbjct: 3 YPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEAN-KVSPEQVITVD 61 Query: 59 GTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 GT G + D L + T R+ V+TGGEP + L + L+ +GF + Sbjct: 62 GTIGRWAEHTADSLIAAFNAKGFTA----RHIVITGGEPCMYDLRELTETLHSQGFATQI 117 Query: 117 ETNGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENY------ 163 ET+GT E + W+ VSPK + +KGG L + N ++ EN+ Sbjct: 118 ETSGTFEVNCADNTWVTVSPK----VNMKGGYPVLAQALNRANEIKHPIATENHIDELDE 173 Query: 164 ----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 I + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 174 LLQDIDISAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLDI 221 >gi|126090177|ref|YP_001041658.1| hypothetical protein Sbal_4540 [Shewanella baltica OS155] gi|126174470|ref|YP_001050619.1| radical activating enzyme [Shewanella baltica OS155] gi|125997675|gb|ABN61750.1| radical activating enzyme [Shewanella baltica OS155] gi|125999833|gb|ABN63903.1| hypothetical protein Sbal_4540 [Shewanella baltica OS155] Length = 222 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 104/229 (45%), Gaps = 32/229 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58 Y + E+F T+QGEG G A+F R GC + W +Q D L + + + Sbjct: 3 YPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEVN-KVMPEQVISVD 61 Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 GT G R+ D A + + R+ V+TGGEP + L + L+ +GF +ET Sbjct: 62 GTIG-RW-ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLCELTETLHSQGFATQIET 119 Query: 119 NGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENYIG------ 165 +GT + D W+ VSPK + +KGG + L + N ++ EN+I Sbjct: 120 SGTFDINCADDTWVTVSPK----VNMKGGYKVLTQALNRANEIKHPIATENHIAELDELL 175 Query: 166 ----FDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 176 QDIDISAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221 >gi|332140739|ref|YP_004426477.1| radical activating enzyme [Alteromonas macleodii str. 'Deep ecotype'] gi|327550761|gb|AEA97479.1| radical activating enzyme [Alteromonas macleodii str. 'Deep ecotype'] Length = 224 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 43/238 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-------- 52 M +I E+F T+QGEG H G ++F R GC C +CDT Sbjct: 1 MSTLNINEMFETIQGEGAHTGVPSIFVRLQGC-----------PVGCPWCDTKHTWEIKP 49 Query: 53 ------DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + V +G + Y + +DL+ + G ++ V+TGGEP + PL Sbjct: 50 DLSVTPEAVITKGQESETYFISNESDLLTQFGHEG-YVAKHVVITGGEPCMYDLRPLTTL 108 Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSP----KAGCDL---------KIKGGQELKLV 152 L+ +G+ +ET+GT E ++ VSP K G D+ +IK ++ Sbjct: 109 LHDKGYTTQIETSGTFEILCDERTYVTVSPKINMKGGYDVLISALERANEIKHPIAMQKH 168 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +++ N ++ LQP+ + T LA+ C + WRLS+QTHK+IGI Sbjct: 169 IDELDALLANVSSLKGKQVCLQPISQQ--KRATELAVRTCIER-NWRLSLQTHKYIGI 223 >gi|317054935|ref|YP_004103402.1| Radical SAM domain-containing protein [Ruminococcus albus 7] gi|315447204|gb|ADU20768.1| Radical SAM domain protein [Ruminococcus albus 7] Length = 224 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/146 (37%), Positives = 78/146 (53%), Gaps = 18/146 (12%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + E F+++ GEG +AG +A+F RF+GCNL QC +CDT + Sbjct: 1 MGTLKLAENFVSINGEGRYAGELALFMRFAGCNL-----------QCDWCDTKWANGADA 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 QLA++ E+ + G + V LTGGEPLLQ D+ LI ALN RG ++ +ET Sbjct: 50 PFTEKTAVQLAEIAED---AADGYGLHRVTLTGGEPLLQKDIAELINALNDRGLDVEIET 106 Query: 119 NGTIEPPQGIDWIC-VSPKAGCDLKI 143 NG++ P + IC V P D K+ Sbjct: 107 NGSV-PIAPVAEICRVRPVFTMDYKL 131 >gi|51473785|ref|YP_067542.1| hypothetical protein RT0595 [Rickettsia typhi str. Wilmington] gi|51460097|gb|AAU04060.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 231 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 104/226 (46%), Gaps = 42/226 (18%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 ++ IF T+QGEG G ++F R GCNL C FCDT+F + Sbjct: 26 VQSIFKTIQGEGIFVGYPSIFIRLGGCNLA-----------CNFCDTEFEDFE-----LI 69 Query: 66 NVDQLADLIEEQWITGE--KEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122 ++DQ+ + ++ + + K V+TGGEP+ Q L Q L + F++ +ETNGT+ Sbjct: 70 DIDQIINKVQNLSLNSKNSKTINLVVITGGEPMRQPIGLLCQKLLDQDFKVQIETNGTLY 129 Query: 123 -EPPQGIDWICVSPKAG---------------CDLKIKGGQEL--KLVFPQVNVSPENYI 164 P+G+ +C SPK G C +K + + + P+V S N Sbjct: 130 RSLPKGVFIVC-SPKVGKTGYNKIREDLLPQVCAVKFIISKNIIEYSIIPEVGQSAYNIP 188 Query: 165 GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 F S+ D EN LA+ ++ RLS+Q HKF+GI Sbjct: 189 VF---VQSMDQNDKKLNAENNELAVKLALES-GARLSLQIHKFLGI 230 >gi|160875275|ref|YP_001554591.1| radical activating enzyme [Shewanella baltica OS195] gi|160860797|gb|ABX49331.1| radical activating enzyme [Shewanella baltica OS195] gi|315267469|gb|ADT94322.1| Radical SAM domain protein [Shewanella baltica OS678] Length = 222 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 106/229 (46%), Gaps = 32/229 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58 Y + E+F T+QGEG G A+F R GC + W +Q D L + + + Sbjct: 3 YPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEVN-KVTPEQVITVD 61 Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 GT GR+ D A + + R+ V+TGGEP + L + L+ +GF +ET Sbjct: 62 GTI-GRW-ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLRELTETLHSQGFATQIET 119 Query: 119 NGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENYI------- 164 +GT + D W+ VSPK + +KGG + L + N ++ EN+I Sbjct: 120 SGTFDINCADDTWVTVSPK----VNMKGGYKVLAQALNRANEIKHPIATENHIAELDELL 175 Query: 165 -GFDF--ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 G D + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 176 QGIDISTKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221 >gi|240127528|ref|ZP_04740189.1| hypothetical protein NgonS_02574 [Neisseria gonorrhoeae SK-93-1035] gi|268685904|ref|ZP_06152766.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|268626188|gb|EEZ58588.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] Length = 212 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 103/227 (45%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 54 TFGMMSLSDILGR---LKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I+ E+++ V+ + +GF + ER Sbjct: 111 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDAVGFCENMERKIRAH 164 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P DG +T I P W+LSVQTHK+ GI Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211 >gi|117620682|ref|YP_856352.1| radical activating enzyme [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562089|gb|ABK39037.1| radical activating enzyme [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 237 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 105/238 (44%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54 Y I EIF T+QGEG G A+F R GC + C +CDT Sbjct: 17 YPINEIFQTIQGEGVFTGLPAIFVRLQGCPV-----------GCPWCDTRHTWVVDPARE 65 Query: 55 VGIQGTKGGRYNVDQLADLIEEQWITGEK----EGRYCVLTGGEPLLQVDVPLIQALNKR 110 VG+Q D + + EQ + + + R+ V+TGGEP L L AL + Sbjct: 66 VGVQAVLDCSNESDGWSKMSTEQILASFQQLGYQARHVVITGGEPCLYDLQDLSAALIEA 125 Query: 111 GFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169 G+++ +ET+GT E W+ VSPK + +KGG L ++ + + E E Sbjct: 126 GYQVQIETSGTSEIQTHEQTWVTVSPK----INMKGG--LPVLVSALERANEIKHPVATE 179 Query: 170 RFSLQPMDGPF----LEENTNLAISYCFQNPK-------------WRLSVQTHKFIGI 210 R ++ +D L EN +A+ Q P+ WRLS+QTHK++ I Sbjct: 180 RH-VEELDALLATARLRENVVIALQPISQKPRATQLAMTTCIARNWRLSIQTHKYLDI 236 >gi|62181454|ref|YP_217871.1| hypothetical protein SC2884 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129087|gb|AAX66790.1| putative Organic radical activating enzymes [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715938|gb|EFZ07509.1| Radical SAM [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 223 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 104/240 (43%), Gaps = 53/240 (22%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLW---SGREQDRLSAQCRFC 50 Y I E+F TLQGEG G A+F R GC + W S RE S + Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTK 62 Query: 51 DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110 ++D K G + + L +I Q T R+ V+TGGEP + +PL L K Sbjct: 63 ESD-------KWGAASSEDLLAVINRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKS 111 Query: 111 GFEIAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQEL---------KLVFPQVNV 158 GF +ET+GT E P W+ VSPK + ++GG ++ ++ P V Sbjct: 112 GFSCQIETSGTHEVRCTPN--TWVTVSPK----VNMRGGYDVLSQALERANEIKHPVGRV 165 Query: 159 SPENYIGFDFERFS--------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +G S LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 166 RDIEALGELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|26249173|ref|NP_755213.1| hypothetical protein c3335 [Escherichia coli CFT073] gi|91212137|ref|YP_542123.1| hypothetical protein UTI89_C3140 [Escherichia coli UTI89] gi|110642915|ref|YP_670645.1| hypothetical protein ECP_2755 [Escherichia coli 536] gi|117625003|ref|YP_853991.1| hypothetical protein APECO1_3756 [Escherichia coli APEC O1] gi|191171179|ref|ZP_03032729.1| conserved hypothetical protein [Escherichia coli F11] gi|215488094|ref|YP_002330525.1| hypothetical protein E2348C_3044 [Escherichia coli O127:H6 str. E2348/69] gi|218559762|ref|YP_002392675.1| hypothetical protein ECS88_3041 [Escherichia coli S88] gi|218690896|ref|YP_002399108.1| hypothetical protein ECED1_3225 [Escherichia coli ED1a] gi|218701268|ref|YP_002408897.1| hypothetical protein ECIAI39_2968 [Escherichia coli IAI39] gi|227888313|ref|ZP_04006118.1| radical SAM domain protein [Escherichia coli 83972] gi|237706601|ref|ZP_04537082.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|300976266|ref|ZP_07173363.1| radical SAM domain protein [Escherichia coli MS 200-1] gi|300976766|ref|ZP_07173583.1| radical SAM domain protein [Escherichia coli MS 45-1] gi|301027570|ref|ZP_07190901.1| radical SAM domain protein [Escherichia coli MS 69-1] gi|301049468|ref|ZP_07196426.1| radical SAM domain protein [Escherichia coli MS 185-1] gi|306812345|ref|ZP_07446543.1| hypothetical protein ECNC101_10539 [Escherichia coli NC101] gi|312964958|ref|ZP_07779198.1| uncharacterized protein ygcF [Escherichia coli 2362-75] gi|331658886|ref|ZP_08359828.1| putative Organic radical activating enzyme [Escherichia coli TA206] gi|26109580|gb|AAN81783.1|AE016765_185 Hypothetical protein ygcF [Escherichia coli CFT073] gi|50250397|emb|CAG25841.1| hypothetical protein ygcF [Escherichia coli] gi|91073711|gb|ABE08592.1| hypothetical protein YgcF [Escherichia coli UTI89] gi|110344507|gb|ABG70744.1| hypothetical protein YgcF [Escherichia coli 536] gi|115514127|gb|ABJ02202.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|190908479|gb|EDV68068.1| conserved hypothetical protein [Escherichia coli F11] gi|215266166|emb|CAS10592.1| predicted protein [Escherichia coli O127:H6 str. E2348/69] gi|218366531|emb|CAR04284.1| conserved hypothetical protein [Escherichia coli S88] gi|218371254|emb|CAR19087.1| conserved hypothetical protein [Escherichia coli IAI39] gi|218428460|emb|CAR09385.2| conserved hypothetical protein [Escherichia coli ED1a] gi|222034465|emb|CAP77207.1| Uncharacterized protein ygcF [Escherichia coli LF82] gi|226899641|gb|EEH85900.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|227834582|gb|EEJ45048.1| radical SAM domain protein [Escherichia coli 83972] gi|281179780|dbj|BAI56110.1| conserved hypothetical protein [Escherichia coli SE15] gi|294493229|gb|ADE91985.1| conserved hypothetical protein [Escherichia coli IHE3034] gi|300298699|gb|EFJ55084.1| radical SAM domain protein [Escherichia coli MS 185-1] gi|300308611|gb|EFJ63131.1| radical SAM domain protein [Escherichia coli MS 200-1] gi|300394899|gb|EFJ78437.1| radical SAM domain protein [Escherichia coli MS 69-1] gi|300409952|gb|EFJ93490.1| radical SAM domain protein [Escherichia coli MS 45-1] gi|305854383|gb|EFM54821.1| hypothetical protein ECNC101_10539 [Escherichia coli NC101] gi|307554747|gb|ADN47522.1| conserved hypothetical protein [Escherichia coli ABU 83972] gi|307625657|gb|ADN69961.1| hypothetical protein UM146_02700 [Escherichia coli UM146] gi|312290514|gb|EFR18394.1| uncharacterized protein ygcF [Escherichia coli 2362-75] gi|312947301|gb|ADR28128.1| hypothetical protein NRG857_13575 [Escherichia coli O83:H1 str. NRG 857C] gi|315289297|gb|EFU48692.1| radical SAM domain protein [Escherichia coli MS 110-3] gi|315293738|gb|EFU53090.1| radical SAM domain protein [Escherichia coli MS 153-1] gi|315298732|gb|EFU57986.1| radical SAM domain protein [Escherichia coli MS 16-3] gi|320194912|gb|EFW69541.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli WV_060327] gi|323188807|gb|EFZ74092.1| hypothetical protein ECRN5871_3230 [Escherichia coli RN587/1] gi|323951009|gb|EGB46885.1| queuosine biosynthesis protein QueE [Escherichia coli H252] gi|323957215|gb|EGB52939.1| queuosine biosynthesis protein QueE [Escherichia coli H263] gi|324005736|gb|EGB74955.1| radical SAM domain protein [Escherichia coli MS 57-2] gi|324015485|gb|EGB84704.1| radical SAM domain protein [Escherichia coli MS 60-1] gi|330908805|gb|EGH37319.1| queuosine Biosynthesis QueE Radical SAM [Escherichia coli AA86] gi|331053468|gb|EGI25497.1| putative Organic radical activating enzyme [Escherichia coli TA206] Length = 223 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 102/237 (43%), Gaps = 47/237 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I E+F TLQGEG G A+F R GC + W E +S T Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + K G + + L +I Q T R+ V+TGGEP + +PL L K GF Sbjct: 63 ----ESDKWGAASSEDLLAVIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114 Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168 +ET+GT E P W+ VSPK L ++GG E+ + ++ +G D Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYEVLSQALERANEIKHPVGRVRDI 168 Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222 >gi|124024647|ref|YP_001018954.1| organic radical activating protein [Prochlorococcus marinus str. MIT 9303] gi|123964933|gb|ABM79689.1| possible organic radical activating enzyme [Prochlorococcus marinus str. MIT 9303] Length = 226 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 98/237 (41%), Gaps = 48/237 (20%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F ++QGEG H GR A F R +GC++ C +CDT + Sbjct: 7 VVETFHSIQGEGAHVGRSAFFIRLAGCDV-----------GCSWCDTKH-SWNSRNHPQI 54 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG-------FEIAVET 118 V+QLA E + + VLTGGEPL PL +AL++ I +ET Sbjct: 55 AVEQLA---VETATAAKNGAAFVVLTGGEPLQHNIAPLCEALHRATETNPDGPLPIHLET 111 Query: 119 NGTIEPPQGIDWICVSPK----------AGC-DLKI----KGGQELKLVFPQVNVSPENY 163 +G + WI +SPK A C +LK+ +G Q ++ Sbjct: 112 SGVNQLSGVPTWITLSPKRHAPPRTDLLAACHELKVVVHERGDLNFAESMAQAALAARKN 171 Query: 164 IGFDFERFS---------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 R S LQP G LA + +P WRLS+QTHK++GIR Sbjct: 172 DDASQSRLSNASKEPLLFLQP--GWATTTGQQLAFEHVQSHPHWRLSMQTHKWLGIR 226 >gi|156932742|ref|YP_001436658.1| hypothetical protein ESA_00531 [Cronobacter sakazakii ATCC BAA-894] gi|156530996|gb|ABU75822.1| hypothetical protein ESA_00531 [Cronobacter sakazakii ATCC BAA-894] Length = 223 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 103/242 (42%), Gaps = 57/242 (23%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------- 53 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWETLADRE 51 Query: 54 ---FVGIQGTKG----GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 F I TK G + + L IE Q T R+ V+TGGEP + +PL + Sbjct: 52 VSLFSIIAKTKESDKWGAASPEDLLAAIERQAYTA----RHVVITGGEPCIHDLLPLTEL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIKGGQEL---------KLVFP-- 154 L G+ +ET+GT E W+ VSPK + ++GG E+ ++ P Sbjct: 108 LEAHGYSCQIETSGTHEVRCTTGTWVTVSPK----VNMRGGYEVLDQALMRADEIKHPVG 163 Query: 155 ---QVNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + E ER +LQP+ E+ T L I C WRLS+QTHK++ Sbjct: 164 RMRDIEALDELLARLHDERQRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYL 220 Query: 209 GI 210 I Sbjct: 221 NI 222 >gi|326336650|ref|ZP_08202818.1| GntS protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691120|gb|EGD33091.1| GntS protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 205 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 47/222 (21%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F T+QGEG + G A F R +GCN+ C +CD + + Sbjct: 13 LMESFYTIQGEGFYKGTAAYFIRLAGCNV-----------GCHWCDVK----ESWDASIH 57 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 + + ++EE + K + ++TGGEPL+ PL + L +G +ET+G P Sbjct: 58 TLVPIKTMVEEAF----KFSKIAIITGGEPLMYNLDPLTELLRSKGIRTHIETSGA-HPL 112 Query: 126 QGI-DWICVSPKAG---CDLKIKGGQELKLVFPQVNVSPENYIGFDF---ERFS------ 172 G+ DWIC+SPK + ELK++ Y DF E S Sbjct: 113 TGVWDWICLSPKKNKRPLPPIHQKANELKMII---------YNQHDFLFAEEMSVLTRTD 163 Query: 173 ----LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP + E+ + Y ++P+W++S+Q HK++ I Sbjct: 164 CIRYLQP-EWSRREKMIPKMVEYVMEHPQWKISLQMHKYLNI 204 >gi|292572231|gb|ADE30146.1| Organic radical activating enzyme [Rickettsia prowazekii Rp22] Length = 225 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 42/226 (18%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 ++ IF T+QGEG G ++F R GCNL C FCDT+F + Sbjct: 20 VQSIFKTIQGEGIFVGYPSIFIRLGGCNLA-----------CNFCDTEFEDFK-----LI 63 Query: 66 NVDQLADLIEEQWITGE--KEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122 ++DQ+ + ++ + + K V+TGGEP+ Q L Q L + F++ +ETNGT+ Sbjct: 64 DIDQILNKVKNLSLNSKNAKTINLVVITGGEPMRQPIGLLCQKLLDQDFKVQIETNGTLY 123 Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN----VSPENYI-----------GF 166 P+ + +C SPK G K ++L PQ++ + +N + + Sbjct: 124 RSLPKEVFIVC-SPKVGKTGYNKIREDL---LPQISAVKFIISKNIVEYSIIPEVGQSAY 179 Query: 167 DFERF--SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 D F S+ D EN LA+ ++ RLS+QTHKF+GI Sbjct: 180 DIPVFVQSMDQNDKRLNNENNELAVKLALES-GARLSLQTHKFLGI 224 >gi|218438303|ref|YP_002376632.1| radical SAM protein [Cyanothece sp. PCC 7424] gi|218171031|gb|ACK69764.1| Radical SAM domain protein [Cyanothece sp. PCC 7424] Length = 210 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 95/220 (43%), Gaps = 37/220 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I E F ++QGEG G A F R GC+++ C +CD + Sbjct: 16 YPIVETFHSVQGEGAWTGVSAFFIRLGGCDVY-----------CPWCDQK-ESWNAKRHP 63 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 +VD LA + ++TGGEPL+ PL L K G ++ +ET+G+ Sbjct: 64 HQSVDTLAQAAKM------ANPAIVIITGGEPLMHDLDPLTTELKKLGLQVHLETSGSHP 117 Query: 124 PPQGIDWICVSPKAG-----------CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 DW+ SPK +LK+ E L +V + + + Sbjct: 118 FSGNFDWVTFSPKPYKKPHDSIYNYVNELKVVVANEEDLHMAEVQAAKLSLTVIKY---- 173 Query: 173 LQP-MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 LQP + P +E L + ++P+WR+S+QTHKF+ +R Sbjct: 174 LQPEWNTPNSKE---LIFDFVLKHPQWRISLQTHKFLNVR 210 >gi|15604457|ref|NP_220975.1| hypothetical protein RP607 [Rickettsia prowazekii str. Madrid E] gi|3861151|emb|CAA15051.1| unknown [Rickettsia prowazekii] Length = 234 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 42/226 (18%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 ++ IF T+QGEG G ++F R GCNL C FCDT+F + Sbjct: 29 VQSIFKTIQGEGIFVGYPSIFIRLGGCNLA-----------CNFCDTEFEDFK-----LI 72 Query: 66 NVDQLADLIEEQWITGE--KEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122 ++DQ+ + ++ + + K V+TGGEP+ Q L Q L + F++ +ETNGT+ Sbjct: 73 DIDQILNKVKNLSLNSKNAKTINLVVITGGEPMRQPIGLLCQKLLDQDFKVQIETNGTLY 132 Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN----VSPENYI-----------GF 166 P+ + +C SPK G K ++L PQ++ + +N + + Sbjct: 133 RSLPKEVFIVC-SPKVGKTGYNKIREDL---LPQISAVKFIISKNIVEYSIIPEVGQSAY 188 Query: 167 DFERF--SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 D F S+ D EN LA+ ++ RLS+QTHKF+GI Sbjct: 189 DIPVFVQSMDQNDKRLNNENNELAVKLALES-GARLSLQTHKFLGI 233 >gi|222475965|ref|YP_002564486.1| Radical SAM domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222454336|gb|ACM58600.1| Radical SAM domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 258 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/132 (39%), Positives = 71/132 (53%), Gaps = 18/132 (13%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F +LQGEG AG +VF R SGCNL +C FCD+ + T R Sbjct: 23 INEVFYSLQGEGTLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPTGAWR- 70 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 +VD +IEE + ++ + VLTGGEPL+ + + L++ L G+ VETNGTI Sbjct: 71 DVDS---IIEE--VHSHEQANHVVLTGGEPLIHEESIELLERLAADGYHTTVETNGTIYR 125 Query: 125 PQGIDWICVSPK 136 ID +SPK Sbjct: 126 DAPIDLASISPK 137 >gi|255531962|ref|YP_003092334.1| Radical SAM domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344946|gb|ACU04272.1| Radical SAM domain protein [Pedobacter heparinus DSM 2366] Length = 207 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 99/228 (43%), Gaps = 52/228 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 L + E F T+QGEG + G+ A F R GC++ C +CD ++ + Sbjct: 11 LLPLMEEFYTIQGEGFNTGKAAYFIRLGGCDV-----------GCHWCD-----VKESWD 54 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + AD I + G+ V+TGGEPL+ L + L ++G +ET+G Sbjct: 55 AELHPLTPADAIVAK--AESYPGKAVVITGGEPLIYNLDYLTRRLREKGILTFIETSGAY 112 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE----NYIGF---DFE------ 169 DWIC+SPK K P+ +++P I F DFE Sbjct: 113 PLSGDWDWICLSPK-------------KFKAPRPDITPYANELKVIVFNKSDFEWAEKYA 159 Query: 170 -------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + LQP + +E T L I Y NPKW +S+QTHKF+ I Sbjct: 160 ETVSANCKLYLQP-EWSKSKEITPLIIDYVMANPKWEISLQTHKFLNI 206 >gi|87123419|ref|ZP_01079270.1| possible organic radical activating enzyme [Synechococcus sp. RS9917] gi|86169139|gb|EAQ70395.1| possible organic radical activating enzyme [Synechococcus sp. RS9917] Length = 202 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/219 (31%), Positives = 99/219 (45%), Gaps = 36/219 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F +LQGEG HAGR A F R GC++ C +CDT + Sbjct: 7 VVETFHSLQGEGLHAGRSAFFIRLGGCDV-----------GCSWCDTKH-SWPAEAHPKR 54 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTIEP 124 +VD LA E + VLTGGEPL L A+ + + +ET+G ++P Sbjct: 55 SVDSLAAATAE---AAHAGAAFVVLTGGEPLHHQLDALTAAIRRICSLPVHLETSG-VDP 110 Query: 125 PQGI-DWICVSPK----------AGCD-LKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 G DW+ +SPK CD LK+ + L+F +V + + Sbjct: 111 LSGAPDWVTLSPKRHRPPRAEVLQACDELKVVVHEPADLLFAEVVATQAPQ-----ATWL 165 Query: 173 LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 LQP G E LA NP+WRLS+Q+HK++G+R Sbjct: 166 LQP--GWSSEAGQELATDMVRGNPRWRLSLQSHKWLGVR 202 >gi|145639292|ref|ZP_01794898.1| predicted methyltransferase [Haemophilus influenzae PittII] gi|145271595|gb|EDK11506.1| predicted methyltransferase [Haemophilus influenzae PittII] gi|309751168|gb|ADO81152.1| Probable 7-cyano-7-deazaguanine (preQ0) synthesis protein QueE [Haemophilus influenzae R2866] Length = 211 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 104/220 (47%), Gaps = 35/220 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 ++I EIF +LQGEG + G +VF RF CNL C +CDT + + Sbjct: 13 FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 56 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 R++V Q+ + + + ++TGGEP + + L++ G+ +A+ETNG Sbjct: 57 RWSVSQILEKVR------SFSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175 P ID+I SPK+ K I E+++V S I + + L P Sbjct: 111 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 170 Query: 176 --MDGP--FLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210 +DG LE T L ++ PKW+LS+QTHK IGI Sbjct: 171 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGI 210 >gi|304408669|ref|ZP_07390290.1| Radical SAM domain protein [Shewanella baltica OS183] gi|307305498|ref|ZP_07585246.1| Radical SAM domain protein [Shewanella baltica BA175] gi|304352490|gb|EFM16887.1| Radical SAM domain protein [Shewanella baltica OS183] gi|306911801|gb|EFN42226.1| Radical SAM domain protein [Shewanella baltica BA175] Length = 222 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 104/229 (45%), Gaps = 32/229 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58 Y + E+F T+QGEG G A+F R GC + W +Q D L + + + Sbjct: 3 YPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEVN-KVTPEQVISVD 61 Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 GT GR+ D A + + R+ V+TGGEP + L + L+ +GF +ET Sbjct: 62 GTI-GRW-ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLRELTETLHNQGFATQIET 119 Query: 119 NGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENYIG------ 165 +GT + D W+ VSPK + +KGG + L + N ++ EN+I Sbjct: 120 SGTFDINCADDTWVTVSPK----VNMKGGYKVLTQALNRANEIKHPIATENHIAELDELL 175 Query: 166 ----FDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 176 QDIDISAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221 >gi|157825999|ref|YP_001493719.1| organic radical activating protein [Rickettsia akari str. Hartford] gi|157799957|gb|ABV75211.1| Organic radical activating enzyme [Rickettsia akari str. Hartford] Length = 225 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 106/224 (47%), Gaps = 38/224 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 ++ IF T+QGEG G A+F R GCNL C FCDT+F + Sbjct: 20 VQSIFKTIQGEGLFVGGPAIFIRLGGCNLA-----------CNFCDTEFEDFK-----LV 63 Query: 66 NVDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122 ++ ++ + +E + + E V+TGGEP+ Q L Q L + F++ +ETNGT+ Sbjct: 64 DIVEILNKVESLALNSKNERAINLVVITGGEPMRQPIELLCQKLLDQDFKVQIETNGTLY 123 Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV------NVSPENYI------GFDFE 169 P + IC SPKAG K ++L V N+ N+I ++ Sbjct: 124 RALPNEVYIIC-SPKAGKTGYSKIREDLLSQISAVKFIVAKNILEYNFIPEVGQTSYNIP 182 Query: 170 RFSLQPMDGP---FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 F +QPMD +EN LA+ ++ RLS+QTHK +GI Sbjct: 183 VF-IQPMDQNNQRLNDENNELAVKLALES-GARLSLQTHKILGI 224 >gi|330431519|gb|AEC16578.1| molybdenum cofactor biosynthesis protein A [Gallibacterium anatis UMN179] Length = 203 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 102/229 (44%), Gaps = 53/229 (23%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y+I EIF +LQGEG + G AVF RF CNL C +CDTD+ Sbjct: 5 YAIVEIFESLQGEGFNTGMPAVFIRFGKCNL-----------ACPWCDTDYQTF-----S 48 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 + Q+AD + + ++TGGEP +Q ++ L+ G+ +++ETNG Sbjct: 49 LMTLQQIADQV------TAFSAKNIIITGGEPTIQPNLEKLLSYFKTLGYFLSIETNGLK 102 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSP---ENYIGFDFERFSLQ 174 P ID+I SPK K I E+++V N+ E + + + L Sbjct: 103 PVPPQIDYIATSPKRLYRHKYQQRCITHADEVRIVNDDENILSFCREIAKKIEAKHYFLS 162 Query: 175 PMD--GPF-----------LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P + G L ENT++ KW+LS+QTHK +GI Sbjct: 163 PCEQQGEMNLLDTIRKLGQLNENTDI---------KWQLSIQTHKLVGI 202 >gi|145631238|ref|ZP_01787011.1| predicted organic radical activating enzyme [Haemophilus influenzae R3021] gi|144983165|gb|EDJ90660.1| predicted organic radical activating enzyme [Haemophilus influenzae R3021] Length = 211 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 104/220 (47%), Gaps = 35/220 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 ++I EIF +LQGEG + G +VF RF CNL C +CDT + + Sbjct: 13 FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 56 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 R++V Q+ + + + ++TGGEP + + L++ G+ +A+ETNG Sbjct: 57 RWSVSQILEKVR------SFSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175 P ID+I SPK+ K I E+++V S I + + L P Sbjct: 111 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 170 Query: 176 --MDGP--FLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210 +DG LE T L ++ PKW+LS+QTHK IGI Sbjct: 171 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGI 210 >gi|16273111|ref|NP_439345.1| hypothetical protein HI1189 [Haemophilus influenzae Rd KW20] gi|68249735|ref|YP_248847.1| organic radical activating protein [Haemophilus influenzae 86-028NP] gi|148826202|ref|YP_001290955.1| organic radical activating protein [Haemophilus influenzae PittEE] gi|229844856|ref|ZP_04464994.1| predicted organic radical activating enzyme [Haemophilus influenzae 6P18H1] gi|229846220|ref|ZP_04466332.1| predicted organic radical activating enzyme [Haemophilus influenzae 7P49H1] gi|260581110|ref|ZP_05848931.1| organic radical activating protein [Haemophilus influenzae RdAW] gi|260582119|ref|ZP_05849913.1| organic radical activating protein [Haemophilus influenzae NT127] gi|329124080|ref|ZP_08252627.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Haemophilus aegyptius ATCC 11116] gi|1723816|sp|P45097|Y1189_HAEIN RecName: Full=7-carboxy-7-deazaguanine synthase homolog gi|1574116|gb|AAC22842.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|68057934|gb|AAX88187.1| predicted organic radical activating enzyme [Haemophilus influenzae 86-028NP] gi|148716362|gb|ABQ98572.1| predicted organic radical activating enzyme [Haemophilus influenzae PittEE] gi|229811224|gb|EEP46941.1| predicted organic radical activating enzyme [Haemophilus influenzae 7P49H1] gi|229812237|gb|EEP47928.1| predicted organic radical activating enzyme [Haemophilus influenzae 6P18H1] gi|260092239|gb|EEW76181.1| organic radical activating protein [Haemophilus influenzae RdAW] gi|260094751|gb|EEW78645.1| organic radical activating protein [Haemophilus influenzae NT127] gi|309973347|gb|ADO96548.1| Probable 7-cyano-7-deazaguanine (preQ0) synthesis protein QueE [Haemophilus influenzae R2846] gi|327467505|gb|EGF13003.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Haemophilus aegyptius ATCC 11116] Length = 211 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 104/220 (47%), Gaps = 35/220 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 ++I EIF +LQGEG + G +VF RF CNL C +CDT + + Sbjct: 13 FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 56 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 R++V Q+ + + + ++TGGEP + + L++ G+ +A+ETNG Sbjct: 57 RWSVSQILEKVR------SFSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175 P ID+I SPK+ K I E+++V S I + + L P Sbjct: 111 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 170 Query: 176 --MDGP--FLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210 +DG LE T L ++ PKW+LS+QTHK IGI Sbjct: 171 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGI 210 >gi|145633081|ref|ZP_01788813.1| predicted methyltransferase [Haemophilus influenzae 3655] gi|145637058|ref|ZP_01792721.1| predicted methyltransferase [Haemophilus influenzae PittHH] gi|319897344|ref|YP_004135540.1| methyltransferase [Haemophilus influenzae F3031] gi|144986307|gb|EDJ92886.1| predicted methyltransferase [Haemophilus influenzae 3655] gi|145269712|gb|EDK09652.1| predicted methyltransferase [Haemophilus influenzae PittHH] gi|317432849|emb|CBY81214.1| Predicted methyltransferase [Haemophilus influenzae F3031] Length = 209 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 104/220 (47%), Gaps = 35/220 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 ++I EIF +LQGEG + G +VF RF CNL C +CDT + + Sbjct: 11 FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 R++V Q+ + + + ++TGGEP + + L++ G+ +A+ETNG Sbjct: 55 RWSVSQILEKVRSF------SSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 108 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175 P ID+I SPK+ K I E+++V S I + + L P Sbjct: 109 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 168 Query: 176 --MDGP--FLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210 +DG LE T L ++ PKW+LS+QTHK IGI Sbjct: 169 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGI 208 >gi|260599124|ref|YP_003211695.1| hypothetical protein CTU_33320 [Cronobacter turicensis z3032] gi|260218301|emb|CBA33277.1| Uncharacterized protein ygcF [Cronobacter turicensis z3032] Length = 223 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 104/242 (42%), Gaps = 57/242 (23%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------- 53 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWETLADRE 51 Query: 54 ---FVGIQGTKG----GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 F I TK G + ++L IE Q T R+ V+TGGEP + +PL + Sbjct: 52 VSLFSIIAKTKESDKWGSASPEELLAAIERQAYTA----RHVVITGGEPCIHDLLPLTEL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIKGGQEL---------KLVFP-- 154 L G+ +ET+GT E W+ VSPK + ++GG E+ ++ P Sbjct: 108 LEAHGYSCQIETSGTHEVRCTTGTWVTVSPK----VNMRGGYEVLDQALMRADEIKHPVG 163 Query: 155 ---QVNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + E ER +LQP+ ++ T L I C WRLS+QTHK++ Sbjct: 164 RMRDIEALDELLARLHDERQRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYL 220 Query: 209 GI 210 I Sbjct: 221 NI 222 >gi|312887506|ref|ZP_07747102.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603] gi|311299994|gb|EFQ77067.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603] Length = 207 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 100/215 (46%), Gaps = 26/215 (12%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 L + E F T+QGEG + G+ A F R GC++ C +CD ++ + Sbjct: 11 LLPLMEEFYTIQGEGYNTGKAAYFIRLGGCDV-----------GCHWCD-----VKESWD 54 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + +D I + + + G+ V+TGGEPL+ L L ++G + +ET+G Sbjct: 55 ASIHPLTPSDTIVDNAV--KYPGKAVVVTGGEPLIYNLDYLTAQLQQKGIKTFIETSGAY 112 Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVS-PENYIGFDFE--RFSLQP 175 DWIC+SP KA ELK +VF + + + E Y + LQP Sbjct: 113 PLSGSWDWICLSPKKFKAPSASVAPYAHELKVIVFNKSDFAWAEQYAALVSPGCKLYLQP 172 Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + +E L + Y NP+W +S+QTHK++ I Sbjct: 173 -EWSKSKEMIPLIVDYVMNNPQWEISLQTHKYLNI 206 >gi|239996401|ref|ZP_04716925.1| radical activating enzyme [Alteromonas macleodii ATCC 27126] Length = 224 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 104/238 (43%), Gaps = 43/238 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF------ 54 M +I E+F T+QGEG H G ++F R GC + C +CDT Sbjct: 1 MSTLNINEMFETIQGEGAHTGIPSIFVRLQGCPV-----------GCPWCDTKHTWEIKP 49 Query: 55 --------VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 V +G + Y + L+ E G ++ V+TGGEP + PL Sbjct: 50 DLSVSPQAVITKGEESETYFISSEEALLAEFGKQG-YVAKHVVITGGEPCMYDLRPLTSL 108 Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSP----KAGCDL---------KIKGGQELKLV 152 L+ G+ +ET+GT E ++ VSP K G D+ +IK ++ Sbjct: 109 LHDNGYTTQIETSGTFEVLCDTRTYVTVSPKINMKGGYDVLVSALERANEIKHPIAMQKH 168 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +++ N D ++ LQP+ + T LA+ C + WRLS+QTHK+IGI Sbjct: 169 IDELDALLANVSSLDGKQVCLQPISQQ--KRATELAVRTCIER-NWRLSLQTHKYIGI 223 >gi|193071786|ref|ZP_03052680.1| conserved hypothetical protein [Escherichia coli E110019] gi|300906700|ref|ZP_07124387.1| radical SAM domain protein [Escherichia coli MS 84-1] gi|300920372|ref|ZP_07136808.1| radical SAM domain protein [Escherichia coli MS 115-1] gi|301304544|ref|ZP_07210654.1| radical SAM domain protein [Escherichia coli MS 124-1] gi|192954902|gb|EDV85411.1| conserved hypothetical protein [Escherichia coli E110019] gi|300401505|gb|EFJ85043.1| radical SAM domain protein [Escherichia coli MS 84-1] gi|300412622|gb|EFJ95932.1| radical SAM domain protein [Escherichia coli MS 115-1] gi|300840148|gb|EFK67908.1| radical SAM domain protein [Escherichia coli MS 124-1] gi|315256635|gb|EFU36603.1| radical SAM domain protein [Escherichia coli MS 85-1] gi|323172921|gb|EFZ58552.1| hypothetical protein ECLT68_2322 [Escherichia coli LT-68] Length = 223 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 103/238 (43%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I E+F TLQGEG G A+F R GC + W E +S T Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + K G + + L +I Q T R+ V+TGGEP + +PL L K GF Sbjct: 63 ----ESDKWGAASSEDLLAVISRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114 Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVNVSPENYIG--FD 167 +ET+GT E P W+ VSPK L ++GG E L + N ++ +G D Sbjct: 115 CQIETSGTHEVRCTPNT--WVTVSPK----LNMRGGYEVLSQALERAN-EIKHPVGRVRD 167 Query: 168 FERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|145627830|ref|ZP_01783631.1| predicted methyltransferase [Haemophilus influenzae 22.1-21] gi|144979605|gb|EDJ89264.1| predicted methyltransferase [Haemophilus influenzae 22.1-21] Length = 217 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 104/220 (47%), Gaps = 35/220 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 ++I EIF +LQGEG + G +VF RF CNL C +CDT + + Sbjct: 19 FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 R++V Q+ + + + ++TGGEP + + L++ G+ +A+ETNG Sbjct: 63 RWSVSQILEKVRSF------SSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 116 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175 P ID+I SPK+ K I E+++V S I + + L P Sbjct: 117 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 176 Query: 176 --MDGP--FLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210 +DG LE T L ++ PKW+LS+QTHK IGI Sbjct: 177 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGI 216 >gi|237729740|ref|ZP_04560221.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226908346|gb|EEH94264.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 223 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 104/233 (44%), Gaps = 39/233 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I E+F TLQGEG G A+F R GC + W E +S T Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLEDREVSLYSILAKTK 62 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + K G + + L +I Q T R+ V+TGGEP + +PL L K GF Sbjct: 63 ----ESDKWGAASSEDLLAVISRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKNGFS 114 Query: 114 IAVETNGTIE---PPQGIDWICVSPKA----GCDL---KIKGGQELKLVFPQV-NVSPEN 162 +ET+GT E P W+ VSPK G D+ ++ E+K +V ++ + Sbjct: 115 CQIETSGTHEVRCTPNT--WVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALD 172 Query: 163 ----YIGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + D R +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 173 ELLATLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222 >gi|300937751|ref|ZP_07152551.1| radical SAM domain protein [Escherichia coli MS 21-1] gi|300457230|gb|EFK20723.1| radical SAM domain protein [Escherichia coli MS 21-1] Length = 223 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 102/237 (43%), Gaps = 47/237 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I EIF TLQGEG G A+F R GC + W E +S T Sbjct: 3 YPINEIFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + K G + + L +I Q T R+ V+TGGEP + +PL L K GF Sbjct: 63 ----ESDKWGAASSEDLLAVIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114 Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168 +ET+GT E P W+ VSPK L ++GG E+ + ++ +G D Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYEVLSQALERANEIKHPVGRVRDI 168 Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|240013450|ref|ZP_04720363.1| hypothetical protein NgonD_02169 [Neisseria gonorrhoeae DGI18] gi|240015889|ref|ZP_04722429.1| hypothetical protein NgonFA_01772 [Neisseria gonorrhoeae FA6140] gi|240080029|ref|ZP_04724572.1| hypothetical protein NgonF_01775 [Neisseria gonorrhoeae FA19] gi|240112239|ref|ZP_04726729.1| hypothetical protein NgonM_01409 [Neisseria gonorrhoeae MS11] gi|240117266|ref|ZP_04731328.1| hypothetical protein NgonPID_02214 [Neisseria gonorrhoeae PID1] gi|240120521|ref|ZP_04733483.1| hypothetical protein NgonPI_01854 [Neisseria gonorrhoeae PID24-1] gi|240122820|ref|ZP_04735776.1| hypothetical protein NgonP_02565 [Neisseria gonorrhoeae PID332] gi|240125015|ref|ZP_04737901.1| hypothetical protein NgonSK_02119 [Neisseria gonorrhoeae SK-92-679] gi|254493044|ref|ZP_05106215.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268598297|ref|ZP_06132464.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268602962|ref|ZP_06137129.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268681434|ref|ZP_06148296.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268683601|ref|ZP_06150463.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|226512084|gb|EEH61429.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268582428|gb|EEZ47104.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268587093|gb|EEZ51769.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268621718|gb|EEZ54118.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268623885|gb|EEZ56285.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] Length = 212 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 103/227 (45%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 54 TFGMMSLSDILG---CLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I+ E+++ V+ + +GF + ER Sbjct: 111 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDVVGFCENMERKIRAH 164 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P DG +T I P W+LSVQTHK+ GI Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211 >gi|284164674|ref|YP_003402953.1| radical SAM protein [Haloterrigena turkmenica DSM 5511] gi|284014329|gb|ADB60280.1| Radical SAM domain protein [Haloterrigena turkmenica DSM 5511] Length = 274 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 51/132 (38%), Positives = 70/132 (53%), Gaps = 19/132 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F +LQGEG AG +VF R SGCNL +C FCD+ + T Sbjct: 35 INELFYSLQGEGTLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPTHAW-L 82 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 ++++ IE + + VLTGGEPL+ + V L++AL+ RG+ VETNGTI Sbjct: 83 GLEEILAEIESH------DADHVVLTGGEPLIHEESVALLEALDDRGYHTTVETNGTINR 136 Query: 125 PQGIDWICVSPK 136 ID +SPK Sbjct: 137 DAPIDLASISPK 148 >gi|268596173|ref|ZP_06130340.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268549961|gb|EEZ44980.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] Length = 267 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 103/227 (45%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 68 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 109 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 110 -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 165 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I+ E+++ V+ + +GF + ER Sbjct: 166 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDVVGFCENMERKIRAH 219 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P DG +T I P W+LSVQTHK+ GI Sbjct: 220 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 266 >gi|271501834|ref|YP_003334860.1| Radical SAM domain-containing protein [Dickeya dadantii Ech586] gi|270345389|gb|ACZ78154.1| Radical SAM domain protein [Dickeya dadantii Ech586] Length = 223 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 109/236 (46%), Gaps = 45/236 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54 Y I E+F TLQGEG G AVF R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGFFTGVPAVFIRLQGCPV-----------GCSWCDTKHTWDTLPERQ 51 Query: 55 -----VGIQGTKGGRYNVDQLADLIEEQWITGE-KEGRYCVLTGGEPLLQVDVPLIQALN 108 V ++ + ++ + L+++ IT + R+ V+TGGEP + PL QAL Sbjct: 52 ISLAEVLVKRGESDAWSSSSVEALLQQ--ITQQGYSARHVVITGGEPCIHDLTPLTQALE 109 Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPK-------AGCDLKIKGGQELKL-VFPQVNVS 159 ++GF +ET+GT E W+ VSPK A D ++ E+K V + ++ Sbjct: 110 QQGFSTQIETSGTHEVRCSSGCWVTVSPKVNMRGGLAVLDQALQRADEIKHPVARERDIE 169 Query: 160 P-ENYIG-FDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E + D ++ +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 170 ALEGLLARLDDDKVRVVALQPVSQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|301169927|emb|CBW29531.1| predicted organic radical activating enzyme [Haemophilus influenzae 10810] Length = 209 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 104/220 (47%), Gaps = 35/220 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 ++I EIF +LQGEG + G +VF RF CNL C +CDT + + Sbjct: 11 FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 R++V Q+ + + + ++TGGEP + + L++ G+ +A+ETNG Sbjct: 55 RWSVSQILEKVRSF------SSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 108 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175 P ID+I SPK+ K I E+++V S I + + L P Sbjct: 109 AIPAQIDYISTSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 168 Query: 176 --MDGP--FLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210 +DG LE T L ++ PKW+LS+QTHK IGI Sbjct: 169 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGI 208 >gi|218709344|ref|YP_002416965.1| organic radical activating enzyme [Vibrio splendidus LGP32] gi|218322363|emb|CAV18509.1| Organic radical activating enzyme [Vibrio splendidus LGP32] Length = 222 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 106/246 (43%), Gaps = 63/246 (25%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y I E+F T+QGEG G AVF R C + C +CDT Q + Sbjct: 1 MYKINEMFETIQGEGVFTGVPAVFVRLQICPV-----------GCSWCDTK----QTWEA 45 Query: 63 GRYNVDQLADL------------IEEQWITGE--KEG---RYCVLTGGEPLLQVDVPLIQ 105 + L D+ I+ Q I E K+G ++ V+TGGEP + VPL + Sbjct: 46 LPEDETSLGDIMVKTEDSPTWTAIDAQGIVNEYIKQGYTAKHIVITGGEPCIYDLVPLTE 105 Query: 106 ALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKI--------------------K 144 A + G +ET+GT E D W+ VSPK K+ K Sbjct: 106 AFEQHGCRCQIETSGTSEVKATPDTWVTVSPKVSMKAKLDILDSALVRANEIKHPVGTGK 165 Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQT 204 ++L + + +V PEN + +LQP+ E T L I C + WRLS+QT Sbjct: 166 DIEQLDALIARADV-PENTV------IALQPISQK--ERATQLCIDTCIER-NWRLSIQT 215 Query: 205 HKFIGI 210 HK++ I Sbjct: 216 HKYLSI 221 >gi|257452357|ref|ZP_05617656.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R] gi|257465851|ref|ZP_05630162.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans ATCC 25563] gi|315917008|ref|ZP_07913248.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans ATCC 25563] gi|317058900|ref|ZP_07923385.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R] gi|313684576|gb|EFS21411.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R] gi|313690883|gb|EFS27718.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans ATCC 25563] Length = 222 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 20/145 (13%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y + EIF ++ GEG AG++A+F RF CNL C +CDT + + + Sbjct: 1 MPKYKVVEIFESINGEGKKAGQLALFIRFQYCNL-----------NCSYCDTKWANSKNS 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFEIAVET 118 +++++ L +E+ I + LTGGEPLLQ D+ L++A +K + FEI +ET Sbjct: 50 PFTWMSLEEILSLAKEKRI------KNITLTGGEPLLQTDIRSLLEAFSKEKQFEIEIET 103 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKI 143 NG++ P + I SP D K+ Sbjct: 104 NGSV-PLETFRNIENSPSFTIDYKL 127 >gi|124026869|ref|YP_001015984.1| putative organic radical activating protein [Prochlorococcus marinus str. NATL1A] gi|123961937|gb|ABM76720.1| possible organic radical activating enzyme [Prochlorococcus marinus str. NATL1A] Length = 213 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 94/223 (42%), Gaps = 35/223 (15%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F +LQGEG HAGR A F R + C + C +CDT + Sbjct: 7 VVECFHSLQGEGEHAGRSAYFIRLASCKV-----------GCPWCDTK----DSWNSELH 51 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA-------LNKRGFEIAVET 118 L DL + E+ + V+TGGEPL L + L K+ I +ET Sbjct: 52 PQQSLIDLSTQTAKAQEEGAAFVVITGGEPLHHNLDDLCKEIRKSTLNLEKKSIPIHLET 111 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIK---GGQELK--------LVFPQVNVSPENYIGFD 167 +G DWI +SPK ++ QELK LVF + G Sbjct: 112 SGVDMLSGKPDWITLSPKRHSPPRLDNLLSCQELKVVIQNAEDLVFAKTMADSIKNNGKI 171 Query: 168 FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + LQ G EE LAI + NP WRLS+QTHK++G+ Sbjct: 172 KPQLFLQA--GWENEEGQTLAIKFVKNNPDWRLSMQTHKWLGV 212 >gi|308050954|ref|YP_003914520.1| hypothetical protein Fbal_3247 [Ferrimonas balearica DSM 9799] gi|307633144|gb|ADN77446.1| conserved hypothetical protein [Ferrimonas balearica DSM 9799] Length = 224 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 106/236 (44%), Gaps = 47/236 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y + E+F T+QGEG H G A+F R GC + W +E ++ T+ Sbjct: 6 YPVNELFETIQGEGVHTGVPAIFLRLQGCPVGCSWCDTKHTWDLQENRKVMLSDVLVKTE 65 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + + G R ++ DL ++ + V+TGGEP + PL + G+ Sbjct: 66 ESVMWCSVGPR----EILDLCMSRYT-----ATHLVITGGEPCMYDLQPLCEVFEAEGYS 116 Query: 114 IAVETNGTIEPPQGID--WICVSPKAGCDLKIKGGQEL---------KLVFPQVNVSPEN 162 I VET+GT P D W+ VSPK +K++GG + ++ P V Sbjct: 117 IQVETSGTY-PVMVSDSAWVTVSPK----IKMRGGLSVLASAIDRADEIKHPVATVKDIE 171 Query: 163 YI--------GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + G D + +LQP+ + T LAI C + WRLSVQTHK++GI Sbjct: 172 QLDELLTGSAGAD-AKVALQPISQK--PKATELAIRTCIKR-NWRLSVQTHKYLGI 223 >gi|148240798|ref|YP_001226185.1| organic radical activating protein [Synechococcus sp. WH 7803] gi|147849337|emb|CAK24888.1| Organic radical activating enzyme [Synechococcus sp. WH 7803] Length = 208 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 98/219 (44%), Gaps = 36/219 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F +LQGEG HAGR A F R +GC S C +CDT + R Sbjct: 13 VVETFHSLQGEGLHAGRSAFFIRLAGC-----------SVGCSWCDTKHSWPAESHPAR- 60 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTIEP 124 L + E + V+TGGEPL L Q L K G + +ET+G ++P Sbjct: 61 ---TLHSIATEAAAAASDGAAFVVITGGEPLHHNLDALAQTLRKICGLPLHLETSG-VDP 116 Query: 125 PQG-IDWICVSPKAGC-----------DLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 G DWI +SPK +LK+ + L+F +V + + Sbjct: 117 LSGNPDWITLSPKRHAPPRAELLSRCHELKVVVHEPADLLFAEVLSAQAPQAA-----WL 171 Query: 173 LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 LQP G E LA+ ++ +WRLS+Q+HK++G+R Sbjct: 172 LQP--GWESVEGQQLALDAARRDGRWRLSLQSHKWLGVR 208 >gi|331648502|ref|ZP_08349590.1| putative Organic radical activating enzyme [Escherichia coli M605] gi|331042249|gb|EGI14391.1| putative Organic radical activating enzyme [Escherichia coli M605] Length = 223 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 102/237 (43%), Gaps = 47/237 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I E+F TLQGEG G A+F R GC + W E +S T Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + K G + + L +I Q T R+ V+TGGEP + +PL L K GF Sbjct: 63 ----ESDKWGAASSEDLLVVIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114 Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168 +ET+GT E P W+ VSPK L ++GG E+ + ++ +G D Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYEVLSQALERANEIKHPVGRVRDI 168 Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222 >gi|283780242|ref|YP_003370997.1| radical SAM domain-containing protein [Pirellula staleyi DSM 6068] gi|283438695|gb|ADB17137.1| Radical SAM domain protein [Pirellula staleyi DSM 6068] Length = 228 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 71/132 (53%), Gaps = 19/132 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E++ +LQGEG G +VF R SGCNL +C FCDT F Q +G + Sbjct: 3 IAELYTSLQGEGRLTGTPSVFVRASGCNL-----------RCWFCDTPFTSWQ-PEGEDW 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 +++++ ++ K+ + V+TGGEP+L + VPL Q L + G I +ET GT+ Sbjct: 51 SLEEIVHQVQ------AKQTSHVVITGGEPMLYSEMVPLTQELKRLGLHITIETAGTLHL 104 Query: 125 PQGIDWICVSPK 136 D + +SPK Sbjct: 105 EVACDLMSISPK 116 >gi|261342207|ref|ZP_05970065.1| radical SAM domain protein [Enterobacter cancerogenus ATCC 35316] gi|288315541|gb|EFC54479.1| radical SAM domain protein [Enterobacter cancerogenus ATCC 35316] Length = 223 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 101/238 (42%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-------- 55 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51 Query: 56 ---------GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G N + L +I Q T R+ V+TGGEP + +PL + Sbjct: 52 VSLFSILAKTKESDKWGAGNAEDLLAIIGRQGWTA----RHVVITGGEPCIHDLMPLTEL 107 Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKA----GCDL---KIKGGQELKLVFPQVN- 157 L K G+ +ET+GT E W+ VSPK G D+ ++ E+K +V Sbjct: 108 LEKNGYSCQIETSGTHEVRCSHTTWVTVSPKVNMRGGYDVLSQALERADEIKHPVGRVRD 167 Query: 158 --VSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E E+ +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLTDEKQRIIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|317049298|ref|YP_004116946.1| Radical SAM domain-containing protein [Pantoea sp. At-9b] gi|316950915|gb|ADU70390.1| Radical SAM domain protein [Pantoea sp. At-9b] Length = 223 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 103/238 (43%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-------- 55 Y I E+F TLQGEG + G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGFYTGVPALFIRLQGCPV-----------GCSWCDTKHTWEKLADRE 51 Query: 56 ---------GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 ++ G + L D I+ Q T R+ V+TGGEP + PL A Sbjct: 52 TSLGDILVKTVESDAWGNADAAMLIDTIQRQGWTA----RHVVITGGEPAIYDLRPLTSA 107 Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKA----GCDL---KIKGGQELKLVFPQV-N 157 L GF +ET+GT E W+ VSPK G D+ ++ E+K +V + Sbjct: 108 LEAAGFACQIETSGTHEIRCSDSTWVTVSPKVNMRGGYDVLPQALQRADEIKHPVARVRD 167 Query: 158 VSPENYI--GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 V + + G E+ +LQP+ + T L I C WRLS+QTHK++ I Sbjct: 168 VEALDALLAGLHDEKKRIIALQPISRG--DAATKLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|255534291|ref|YP_003094662.1| Queuosine Biosynthesis QueE Radical SAM [Flavobacteriaceae bacterium 3519-10] gi|255340487|gb|ACU06600.1| Queuosine Biosynthesis QueE Radical SAM [Flavobacteriaceae bacterium 3519-10] Length = 210 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 95/220 (43%), Gaps = 35/220 (15%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 ++ + E F TLQGEG H G+ A F R GC++ C +CD T Sbjct: 14 EMLPVMEHFYTLQGEGAHTGKAAYFIRLGGCDV-----------GCHWCDVK-ESWDPTL 61 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + Q+A+ T K + VLTGGEPL+ L L + G I +ET+G Sbjct: 62 HPLMSAVQIAE-------TAAKHCKTIVLTGGEPLMWNLEILTSRLKELGCTIHIETSGA 114 Query: 122 IEPPQGIDWICVSPKAG---CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS-LQPMD 177 +DWI +SPK D ELK++ V N + F E+ + + P Sbjct: 115 YPMSGHLDWITLSPKKTGLPKDQIYAKAHELKVI-----VFNNNDLKFAAEQAAKVSPTC 169 Query: 178 GPFL-------EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +L EE + NP+W+ SVQTHK++ I Sbjct: 170 RLYLQSEWSKREEIYPKITDFILANPEWQASVQTHKYLNI 209 >gi|145298762|ref|YP_001141603.1| radical activating enzyme [Aeromonas salmonicida subsp. salmonicida A449] gi|142851534|gb|ABO89855.1| radical activating enzyme [Aeromonas salmonicida subsp. salmonicida A449] Length = 250 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 101/245 (41%), Gaps = 63/245 (25%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54 Y I EIF T+QGEG G A+F R GC + C +CDT Sbjct: 30 YPINEIFQTIQGEGIFTGLPAIFVRLQGCPV-----------GCPWCDTRHTWIVDPARE 78 Query: 55 VGIQGTKGGRYNVDQLADLIEEQWITGEK----EGRYCVLTGGEPLLQVDVPLIQALNKR 110 VG+Q D + + +Q + + + R+ V+TGGEP L L L Sbjct: 79 VGVQAVLDCSNESDSWSKMSTDQILASFQQLGYQARHVVITGGEPCLYDLHELSTVLLAA 138 Query: 111 GFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIKGG----------------------- 146 G+++ +ET+GT E W+ VSPK G +KGG Sbjct: 139 GYQVQIETSGTSEIKTHDSTWVTVSPKIG----MKGGLPVLVSALERANEIKHPVATERH 194 Query: 147 -QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205 +EL + + P+ I +LQP+ T LA++ C WRLS+QTH Sbjct: 195 IEELDALLATATLRPDVEI-------ALQPISQK--PRATQLAMAVCIAR-NWRLSIQTH 244 Query: 206 KFIGI 210 K++ I Sbjct: 245 KYLDI 249 >gi|126697219|ref|YP_001092105.1| putative organic radical activating protein [Prochlorococcus marinus str. MIT 9301] gi|126544262|gb|ABO18504.1| possible organic radical activating enzyme [Prochlorococcus marinus str. MIT 9301] Length = 223 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 101/238 (42%), Gaps = 59/238 (24%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 E F +LQGEG HAG+ A F R +GC + C +CDT +Y Sbjct: 9 EQFHSLQGEGYHAGKSAFFVRLAGCKV-----------GCSWCDTK----NSWDEKKYPS 53 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGFEIAVETNG 120 + +I+ I EK +CV+TGGEPL +A+ K + +I +ET+G Sbjct: 54 ISIEKIIDRIKIAREKGASFCVITGGEPLQHNLDNFCKAIKKMTMGEELKPMKIHIETSG 113 Query: 121 TIEPPQGIDWICVSPK----------AGCD---------------LKIKGGQELKLVFPQ 155 DWI +SPK C+ ++IK + LK P Sbjct: 114 VNSISGSYDWITLSPKRHSPPKSYFLKNCNEIKIIINEIEDIEFAIQIK-KETLKQYHPS 172 Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTN---LAISYCFQNPKWRLSVQTHKFIGI 210 E+ + + + F LQP N N LAI + NP W+LS+QTHK++ I Sbjct: 173 ---KSEDGLKKEDKIFYLQPA-----WNNANGFSLAIDFVKNNPDWKLSLQTHKYLKI 222 >gi|149369786|ref|ZP_01889637.1| hypothetical protein SCB49_01894 [unidentified eubacterium SCB49] gi|149356277|gb|EDM44833.1| hypothetical protein SCB49_01894 [unidentified eubacterium SCB49] Length = 209 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 95/224 (42%), Gaps = 51/224 (22%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F T+QGEG + G A F R GC++ C +CD Sbjct: 17 LMEEFYTIQGEGYYKGTAAYFIRIGGCDV-----------GCHWCDVK-ESWNPDIHPPT 64 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 +++ +AD K + V+TGGEPL+ PL + L +G +ET+G Sbjct: 65 SIETIAD-------NAAKYSKTIVITGGEPLMWDMNPLTELLKSKGVNTHIETSGAYSLS 117 Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFERFS-------- 172 DWIC+SPK ++KL P+V + Y DF RF+ Sbjct: 118 GTWDWICLSPK-----------KMKLPTPEVYAAAHELKMIIYNKDDF-RFAEEQASKVN 165 Query: 173 ------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP + ++ + Y QNPKW +S+QTHK++ I Sbjct: 166 ADCKLFLQP-EWSKRDKMVPEIVDYVMQNPKWVVSLQTHKYLNI 208 >gi|157148316|ref|YP_001455635.1| hypothetical protein CKO_04133 [Citrobacter koseri ATCC BAA-895] gi|157085521|gb|ABV15199.1| hypothetical protein CKO_04133 [Citrobacter koseri ATCC BAA-895] Length = 223 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 101/233 (43%), Gaps = 39/233 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I E+F TLQGEG G A+F R GC + W E +S T Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLEDREVSLYSILAKTK 62 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + K G + + L +I Q T R+ V+TGGEP + +PL L K GF Sbjct: 63 ----ESDKWGAASSEDLLAVISRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKNGFS 114 Query: 114 IAVETNGTIE---PPQGIDWICVSPKA----GCDL---KIKGGQELKLVFPQVNVSPE-- 161 +ET+GT E P W+ VSPK G D+ ++ E+K +V Sbjct: 115 CQIETSGTHEVRCTPNT--WVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALD 172 Query: 162 ---NYIGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + D R +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 173 ELLATLSDDKPRIIALQPISQK--EDATRLCIETCIVR-NWRLSMQTHKYLNI 222 >gi|170018977|ref|YP_001723931.1| hypothetical protein EcolC_0935 [Escherichia coli ATCC 8739] gi|312973008|ref|ZP_07787181.1| uncharacterized protein ygcF [Escherichia coli 1827-70] gi|169753905|gb|ACA76604.1| conserved hypothetical protein [Escherichia coli ATCC 8739] gi|310332950|gb|EFQ00164.1| uncharacterized protein ygcF [Escherichia coli 1827-70] gi|323941542|gb|EGB37724.1| queuosine biosynthesis protein QueE [Escherichia coli E482] Length = 223 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 102/237 (43%), Gaps = 47/237 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I E+F TLQGEG G A+F R GC + W E +S T Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + K G + + L +I Q T R+ V+TGGEP + +PL L K GF Sbjct: 63 ----ESDKWGAASSEDLLAIIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114 Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168 +ET+GT E P W+ VSPK L ++GG E+ + ++ +G D Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYEVLSQALERANEIKHPVGRVRDI 168 Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|304388249|ref|ZP_07370369.1| radical SAM domain protein [Neisseria meningitidis ATCC 13091] gi|304337776|gb|EFM03925.1| radical SAM domain protein [Neisseria meningitidis ATCC 13091] Length = 212 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 102/227 (44%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 54 TFGMMSLSDILG---CLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I E+++ V+ + +GF + ER Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIAEADEVRI------VADGDVVGFCENMERKIRAH 164 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P DG +T I P W+LSVQTHK+ GI Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGI 211 >gi|291086244|ref|ZP_06355196.2| radical SAM domain protein [Citrobacter youngae ATCC 29220] gi|291068637|gb|EFE06746.1| radical SAM domain protein [Citrobacter youngae ATCC 29220] Length = 242 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 104/238 (43%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I E+F TLQGEG G A+F R GC + W E +S T Sbjct: 22 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLEDREVSLYSILAKTK 81 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + K G + + L +I+ Q T R+ V+TGGEP + +PL L K GF Sbjct: 82 ----ESDKWGAASSEDLLAVIQRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKNGFS 133 Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVNVSPENYIG--FD 167 +ET+GT E P W+ VSPK + ++GG + L + N ++ +G D Sbjct: 134 CQIETSGTHEVRCTPNT--WVTVSPK----VNMRGGYDVLSQALERAN-EIKHPVGRVRD 186 Query: 168 FERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 187 IEALDELLATLSDDKPRIIALQPISQK--EDATRLCIDTCIAC-NWRLSMQTHKYLNI 241 >gi|15892856|ref|NP_360570.1| hypothetical protein RC0933 [Rickettsia conorii str. Malish 7] gi|34581434|ref|ZP_00142914.1| hypothetical protein [Rickettsia sibirica 246] gi|157828787|ref|YP_001495029.1| hypothetical protein A1G_05140 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933515|ref|YP_001650304.1| queuosine biosynthesis protein [Rickettsia rickettsii str. Iowa] gi|229586950|ref|YP_002845451.1| Organic radical activating enzyme [Rickettsia africae ESF-5] gi|15620043|gb|AAL03471.1| unknown [Rickettsia conorii str. Malish 7] gi|28262819|gb|EAA26323.1| unknown [Rickettsia sibirica 246] gi|157801268|gb|ABV76521.1| hypothetical protein A1G_05140 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908602|gb|ABY72898.1| queuosine biosynthesis protein [Rickettsia rickettsii str. Iowa] gi|228022000|gb|ACP53708.1| Organic radical activating enzyme [Rickettsia africae ESF-5] Length = 225 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 44/227 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 ++ IF T+QGEG G A+F R GCNL C FCDT+F Sbjct: 20 VQSIFKTIQGEGIFVGCPAIFIRLGGCNLA-----------CNFCDTEFEDFD-----LV 63 Query: 66 NVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122 ++D++ + +E + EK V+TGGEP+ Q L Q L R ++ +ETNGT+ Sbjct: 64 DIDKILNKVESLALNSKNEKSINLVVITGGEPMRQPIELLCQKLLDRDVKVQIETNGTLY 123 Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN----VSPENYI-----------GF 166 P+ + IC SPK G K ++L P+++ + +N + + Sbjct: 124 RSLPKEVSIIC-SPKVGKTGYSKIREDL---LPKISAVKFIVAKNILEYSLIPEVGQTSY 179 Query: 167 DFERFSLQPMDGP---FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + F +QPMD EN LA+ ++ RLS+QTHKF+ I Sbjct: 180 NIPVF-IQPMDQNNQRLNGENNELAVKLALES-GARLSLQTHKFLNI 224 >gi|218767651|ref|YP_002342163.1| hypothetical protein NMA0707 [Neisseria meningitidis Z2491] gi|121051659|emb|CAM07962.1| hypothetical protein NMA0707 [Neisseria meningitidis Z2491] gi|308388712|gb|ADO31032.1| hypothetical protein NMBB_0569 [Neisseria meningitidis alpha710] Length = 212 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 54 TFGMMSLSDILGR---LKAYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I+ E+++ V+ + + F + ER Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDVVAFCENMERKIRAH 164 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P DG +T I P W+LSVQTHK+ GI Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211 >gi|238786798|ref|ZP_04630599.1| hypothetical protein yfred0001_17670 [Yersinia frederiksenii ATCC 33641] gi|238725166|gb|EEQ16805.1| hypothetical protein yfred0001_17670 [Yersinia frederiksenii ATCC 33641] Length = 223 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 101/234 (43%), Gaps = 41/234 (17%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60 Y I E+F TLQGEG G A+F R GC + W + R D + ++ Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKDANREVDMQRIMVKTA 62 Query: 61 KG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G QL D+ +Q T R+ V+TGGEP + PL L + G+ +E Sbjct: 63 ESDAWGTATEQQLLDIFIQQGYT----ARHVVITGGEPAIYDLFPLTSHLEQAGYSCQIE 118 Query: 118 TNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY------------- 163 T+GT E W+ VSPK + ++GG + V PQ + Sbjct: 119 TSGTHEVQCSATTWVTVSPK----VNMRGGLK---VLPQALQRADEIKHPVGRLRDIEAL 171 Query: 164 ------IGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + D +R +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 172 EALLATLDDDKKRIIALQPISQK--EDATKLCIETCIVK-NWRLSMQTHKYLNI 222 >gi|56414895|ref|YP_151970.1| hypothetical protein SPA2807 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363823|ref|YP_002143460.1| hypothetical protein SSPA2615 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129152|gb|AAV78658.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095300|emb|CAR60857.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 223 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 107/234 (45%), Gaps = 41/234 (17%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGI- 57 Y I E+F TLQGEG G A+F R GC + W + D+LS + + I Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLYSILAKIK 62 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + K G + + L +I Q T R+ V+TGGEP + +PL L K GF +E Sbjct: 63 ESDKWGAASSEDLLAVINRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKSGFSCQIE 118 Query: 118 TNGTIE---PPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVNVSPENYIG--FDFERF 171 T+GT E P W+ VSPK + ++GG + L + N ++ +G D E Sbjct: 119 TSGTHEVRCTPNT--WVTVSPK----VNMRGGYDVLSQALERAN-EIKHPVGRVRDIEAL 171 Query: 172 ---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 172 DELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|33862246|ref|NP_893807.1| putative organic radical activating protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634464|emb|CAE20149.1| possible organic radical activating enzyme [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 223 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 104/236 (44%), Gaps = 53/236 (22%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 E F +LQGEG H G+ A F R +GC S C +CDT +Y + Sbjct: 9 EKFHSLQGEGFHTGQSAFFIRLAGC-----------SVGCSWCDTK----HSWDKEKYPL 53 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-------IAVETNG 120 + +I+E +K + V+TGGEPL L QA+NK E I +ET+G Sbjct: 54 IPIKKIIDEIKKARKKGASFLVITGGEPLHHNLDNLCQAINKETSEKDQNPIKIHIETSG 113 Query: 121 TIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFP-------------------QVNV 158 + DWI +SPK K ++ ELK++ Q Sbjct: 114 VNKMSGNYDWITLSPKRHLPPKTYFLENFNELKIIINDKKDIDFAIDIKQEIMNKYQNLS 173 Query: 159 SPENYIGFDFERFSLQPMDGPFLEENT---NLAISYCFQNPKWRLSVQTHKFIGIR 211 S +N+ D +++ +QP EN +L I + NP+W LS+QTHK++ I+ Sbjct: 174 SKDNFYKLD-KKYYVQPA-----WENARGFSLTIDFVKNNPEWNLSLQTHKYLKIK 223 >gi|298370138|ref|ZP_06981454.1| radical SAM domain protein [Neisseria sp. oral taxon 014 str. F0314] gi|298281598|gb|EFI23087.1| radical SAM domain protein [Neisseria sp. oral taxon 014 str. F0314] Length = 241 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 105/232 (45%), Gaps = 58/232 (25%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 42 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 82 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 ++ + L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 83 KFGMMSLSDILGR---LKTYAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCIETNGLK 139 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I E+++ V+ + + F + ER Sbjct: 140 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRI------VADGDVVAFCENMERKIRAR 193 Query: 171 -FSLQPMDGPFLEENTNLAISYCFQ-----------NPKWRLSVQTHKFIGI 210 + L P E+N+ + I + + W+LSVQTHK+ GI Sbjct: 194 HYYLSP-----CEQNSVMNIYDTIRQIGLLNSRPDASVHWQLSVQTHKWAGI 240 >gi|15832887|ref|NP_311660.1| hypothetical protein ECs3633 [Escherichia coli O157:H7 str. Sakai] gi|16130684|ref|NP_417257.1| conserved protein [Escherichia coli str. K-12 substr. MG1655] gi|24114061|ref|NP_708571.1| hypothetical protein SF2790 [Shigella flexneri 2a str. 301] gi|30064123|ref|NP_838294.1| hypothetical protein S2984 [Shigella flexneri 2a str. 2457T] gi|82778146|ref|YP_404495.1| hypothetical protein SDY_2981 [Shigella dysenteriae Sd197] gi|89109563|ref|AP_003343.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110] gi|157155007|ref|YP_001464098.1| hypothetical protein EcE24377A_3080 [Escherichia coli E24377A] gi|157162228|ref|YP_001459546.1| hypothetical protein EcHS_A2918 [Escherichia coli HS] gi|168749899|ref|ZP_02774921.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] gi|168758464|ref|ZP_02783471.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|168762823|ref|ZP_02787830.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] gi|168768869|ref|ZP_02793876.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|168778760|ref|ZP_02803767.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] gi|168788031|ref|ZP_02813038.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] gi|168802847|ref|ZP_02827854.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] gi|170082350|ref|YP_001731670.1| hypothetical protein ECDH10B_2944 [Escherichia coli str. K-12 substr. DH10B] gi|170682101|ref|YP_001744934.1| hypothetical protein EcSMS35_2910 [Escherichia coli SMS-3-5] gi|170766131|ref|ZP_02900942.1| conserved hypothetical protein [Escherichia albertii TW07627] gi|188495163|ref|ZP_03002433.1| conserved hypothetical protein [Escherichia coli 53638] gi|194434862|ref|ZP_03067109.1| conserved hypothetical protein [Shigella dysenteriae 1012] gi|194438962|ref|ZP_03071046.1| conserved hypothetical protein [Escherichia coli 101-1] gi|195939488|ref|ZP_03084870.1| hypothetical protein EscherichcoliO157_24278 [Escherichia coli O157:H7 str. EC4024] gi|208805739|ref|ZP_03248076.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] gi|208813020|ref|ZP_03254349.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208819186|ref|ZP_03259506.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209398503|ref|YP_002272239.1| hypothetical protein ECH74115_4033 [Escherichia coli O157:H7 str. EC4115] gi|217327761|ref|ZP_03443844.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|218547712|ref|YP_002381503.1| hypothetical protein EFER_0293 [Escherichia fergusonii ATCC 35469] gi|218696375|ref|YP_002404042.1| hypothetical protein EC55989_3051 [Escherichia coli 55989] gi|218706272|ref|YP_002413791.1| hypothetical protein ECUMN_3104 [Escherichia coli UMN026] gi|238901913|ref|YP_002927709.1| hypothetical protein BWG_2512 [Escherichia coli BW2952] gi|253772373|ref|YP_003035204.1| hypothetical protein ECBD_0953 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037826|ref|ZP_04871884.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|254162703|ref|YP_003045811.1| hypothetical protein ECB_02622 [Escherichia coli B str. REL606] gi|254794716|ref|YP_003079553.1| hypothetical protein ECSP_3726 [Escherichia coli O157:H7 str. TW14359] gi|256024721|ref|ZP_05438586.1| hypothetical protein E4_15200 [Escherichia sp. 4_1_40B] gi|261226072|ref|ZP_05940353.1| hypothetical protein EscherichiacoliO157_15958 [Escherichia coli O157:H7 str. FRIK2000] gi|261256672|ref|ZP_05949205.1| hypothetical protein EscherichiacoliO157EcO_12655 [Escherichia coli O157:H7 str. FRIK966] gi|291284103|ref|YP_003500921.1| hypothetical protein G2583_3426 [Escherichia coli O55:H7 str. CB9615] gi|293406268|ref|ZP_06650194.1| aconitate hydratase [Escherichia coli FVEC1412] gi|293416022|ref|ZP_06658662.1| ygcF protein [Escherichia coli B185] gi|293449103|ref|ZP_06663524.1| ygcF protein [Escherichia coli B088] gi|298382006|ref|ZP_06991603.1| ygcF protein [Escherichia coli FVEC1302] gi|300899636|ref|ZP_07117868.1| radical SAM domain protein [Escherichia coli MS 198-1] gi|300931233|ref|ZP_07146574.1| radical SAM domain protein [Escherichia coli MS 187-1] gi|300950504|ref|ZP_07164414.1| radical SAM domain protein [Escherichia coli MS 116-1] gi|300958089|ref|ZP_07170250.1| radical SAM domain protein [Escherichia coli MS 175-1] gi|301020692|ref|ZP_07184762.1| radical SAM domain protein [Escherichia coli MS 196-1] gi|301645261|ref|ZP_07245212.1| radical SAM domain protein [Escherichia coli MS 146-1] gi|307139461|ref|ZP_07498817.1| hypothetical protein EcolH7_15212 [Escherichia coli H736] gi|307312795|ref|ZP_07592425.1| Radical SAM domain protein [Escherichia coli W] gi|309786123|ref|ZP_07680751.1| uncharacterized protein ygcF [Shigella dysenteriae 1617] gi|331643461|ref|ZP_08344592.1| putative Organic radical activating enzyme [Escherichia coli H736] gi|331654257|ref|ZP_08355257.1| putative Organic radical activating enzyme [Escherichia coli M718] gi|331684398|ref|ZP_08384990.1| putative Organic radical activating enzyme [Escherichia coli H299] gi|54040228|sp|P64555|YGCF_ECO57 RecName: Full=7-carboxy-7-deazaguanine synthase homolog gi|54040229|sp|P64556|YGCF_SHIFL RecName: Full=7-carboxy-7-deazaguanine synthase homolog gi|54042396|sp|P64554|YGCF_ECOLI RecName: Full=7-carboxy-7-deazaguanine synthase homolog gi|882671|gb|AAA69287.1| ORF_f223 [Escherichia coli str. K-12 substr. MG1655] gi|1789139|gb|AAC75819.1| conserved protein [Escherichia coli str. K-12 substr. MG1655] gi|13363104|dbj|BAB37056.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|24053188|gb|AAN44278.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30042379|gb|AAP18104.1| hypothetical protein S2984 [Shigella flexneri 2a str. 2457T] gi|81242294|gb|ABB63004.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|85675596|dbj|BAE76851.1| conserved hypothetical protein [Escherichia coli str. K12 substr. W3110] gi|157067908|gb|ABV07163.1| conserved hypothetical protein [Escherichia coli HS] gi|157077037|gb|ABV16745.1| conserved hypothetical protein [Escherichia coli E24377A] gi|169890185|gb|ACB03892.1| conserved protein [Escherichia coli str. K-12 substr. DH10B] gi|170125277|gb|EDS94208.1| conserved hypothetical protein [Escherichia albertii TW07627] gi|170519819|gb|ACB17997.1| conserved hypothetical protein [Escherichia coli SMS-3-5] gi|188015830|gb|EDU53952.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] gi|188490362|gb|EDU65465.1| conserved hypothetical protein [Escherichia coli 53638] gi|189003552|gb|EDU72538.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] gi|189354704|gb|EDU73123.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|189362097|gb|EDU80516.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|189366881|gb|EDU85297.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] gi|189372100|gb|EDU90516.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] gi|189375278|gb|EDU93694.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] gi|194416881|gb|EDX33003.1| conserved hypothetical protein [Shigella dysenteriae 1012] gi|194422083|gb|EDX38086.1| conserved hypothetical protein [Escherichia coli 101-1] gi|208725540|gb|EDZ75141.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] gi|208734297|gb|EDZ82984.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208739309|gb|EDZ86991.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209159903|gb|ACI37336.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4115] gi|209761508|gb|ACI79066.1| hypothetical protein ECs3633 [Escherichia coli] gi|209761510|gb|ACI79067.1| hypothetical protein ECs3633 [Escherichia coli] gi|209761512|gb|ACI79068.1| hypothetical protein ECs3633 [Escherichia coli] gi|209761514|gb|ACI79069.1| hypothetical protein ECs3633 [Escherichia coli] gi|209761516|gb|ACI79070.1| hypothetical protein ECs3633 [Escherichia coli] gi|217320128|gb|EEC28553.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|218353107|emb|CAU98932.1| conserved hypothetical protein [Escherichia coli 55989] gi|218355253|emb|CAQ87860.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469] gi|218433369|emb|CAR14271.1| conserved hypothetical protein [Escherichia coli UMN026] gi|226839450|gb|EEH71471.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|238860367|gb|ACR62365.1| conserved protein [Escherichia coli BW2952] gi|242378324|emb|CAQ33101.1| conserved protein [Escherichia coli BL21(DE3)] gi|253323417|gb|ACT28019.1| conserved hypothetical protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974604|gb|ACT40275.1| hypothetical protein ECB_02622 [Escherichia coli B str. REL606] gi|253978769|gb|ACT44439.1| hypothetical protein ECD_02622 [Escherichia coli BL21(DE3)] gi|254594116|gb|ACT73477.1| conserved protein [Escherichia coli O157:H7 str. TW14359] gi|260448173|gb|ACX38595.1| conserved hypothetical protein [Escherichia coli DH1] gi|281602138|gb|ADA75122.1| hypothetical protein SFxv_3060 [Shigella flexneri 2002017] gi|290763976|gb|ADD57937.1| hypothetical protein G2583_3426 [Escherichia coli O55:H7 str. CB9615] gi|291322193|gb|EFE61622.1| ygcF protein [Escherichia coli B088] gi|291426274|gb|EFE99306.1| aconitate hydratase [Escherichia coli FVEC1412] gi|291432211|gb|EFF05193.1| ygcF protein [Escherichia coli B185] gi|298277146|gb|EFI18662.1| ygcF protein [Escherichia coli FVEC1302] gi|299881782|gb|EFI89993.1| radical SAM domain protein [Escherichia coli MS 196-1] gi|300315222|gb|EFJ65006.1| radical SAM domain protein [Escherichia coli MS 175-1] gi|300356797|gb|EFJ72667.1| radical SAM domain protein [Escherichia coli MS 198-1] gi|300450164|gb|EFK13784.1| radical SAM domain protein [Escherichia coli MS 116-1] gi|300460946|gb|EFK24439.1| radical SAM domain protein [Escherichia coli MS 187-1] gi|301076426|gb|EFK91232.1| radical SAM domain protein [Escherichia coli MS 146-1] gi|306907230|gb|EFN37736.1| Radical SAM domain protein [Escherichia coli W] gi|308925868|gb|EFP71347.1| uncharacterized protein ygcF [Shigella dysenteriae 1617] gi|309703136|emb|CBJ02470.1| conserved hypothetical protein [Escherichia coli ETEC H10407] gi|313647836|gb|EFS12282.1| uncharacterized protein ygcF [Shigella flexneri 2a str. 2457T] gi|315062058|gb|ADT76385.1| conserved protein [Escherichia coli W] gi|315137383|dbj|BAJ44542.1| hypothetical protein ECDH1ME8569_2686 [Escherichia coli DH1] gi|315615162|gb|EFU95799.1| uncharacterized protein ygcF [Escherichia coli 3431] gi|320182388|gb|EFW57285.1| Queuosine Biosynthesis QueE Radical SAM [Shigella boydii ATCC 9905] gi|320189106|gb|EFW63765.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli O157:H7 str. EC1212] gi|320640422|gb|EFX09961.1| hypothetical protein ECO5101_03379 [Escherichia coli O157:H7 str. G5101] gi|320645668|gb|EFX14653.1| hypothetical protein ECO9389_22861 [Escherichia coli O157:H- str. 493-89] gi|320650968|gb|EFX19408.1| hypothetical protein ECO2687_10848 [Escherichia coli O157:H- str. H 2687] gi|320656464|gb|EFX24360.1| hypothetical protein ECO7815_01005 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662360|gb|EFX29757.1| hypothetical protein ECO5905_04892 [Escherichia coli O55:H7 str. USDA 5905] gi|320667058|gb|EFX34021.1| hypothetical protein ECOSU61_08009 [Escherichia coli O157:H7 str. LSU-61] gi|323183315|gb|EFZ68712.1| hypothetical protein ECOK1357_3090 [Escherichia coli 1357] gi|323377359|gb|ADX49627.1| Radical SAM domain protein [Escherichia coli KO11] gi|323933926|gb|EGB30415.1| queuosine biosynthesis protein QueE [Escherichia coli E1520] gi|323946500|gb|EGB42526.1| queuosine biosynthesis protein QueE [Escherichia coli H120] gi|323960705|gb|EGB56329.1| queuosine biosynthesis protein QueE [Escherichia coli H489] gi|323966752|gb|EGB62183.1| queuosine biosynthesis protein QueE [Escherichia coli M863] gi|323971622|gb|EGB66853.1| queuosine biosynthesis protein QueE [Escherichia coli TA007] gi|323978613|gb|EGB73695.1| queuosine biosynthesis protein QueE [Escherichia coli TW10509] gi|324111402|gb|EGC05384.1| hypothetical protein ERIG_04120 [Escherichia fergusonii B253] gi|324119819|gb|EGC13698.1| queuosine biosynthesis protein QueE [Escherichia coli E1167] gi|325496184|gb|EGC94043.1| hypothetical protein ECD227_0281 [Escherichia fergusonii ECD227] gi|326339155|gb|EGD62970.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli O157:H7 str. 1044] gi|326342962|gb|EGD66730.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli O157:H7 str. 1125] gi|327251511|gb|EGE63197.1| hypothetical protein ECSTEC7V_3359 [Escherichia coli STEC_7v] gi|331036932|gb|EGI09156.1| putative Organic radical activating enzyme [Escherichia coli H736] gi|331047639|gb|EGI19716.1| putative Organic radical activating enzyme [Escherichia coli M718] gi|331078013|gb|EGI49219.1| putative Organic radical activating enzyme [Escherichia coli H299] gi|332087574|gb|EGI92702.1| hypothetical protein SB521682_3318 [Shigella boydii 5216-82] gi|332087749|gb|EGI92876.1| hypothetical protein SD15574_3520 [Shigella dysenteriae 155-74] Length = 223 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 102/237 (43%), Gaps = 47/237 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I E+F TLQGEG G A+F R GC + W E +S T Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + K G + + L +I Q T R+ V+TGGEP + +PL L K GF Sbjct: 63 ----ESDKWGAASSEDLLAVIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114 Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168 +ET+GT E P W+ VSPK L ++GG E+ + ++ +G D Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYEVLSQALERANEIKHPVGRVRDI 168 Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|220917757|ref|YP_002493061.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955611|gb|ACL65995.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 210 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 103/230 (44%), Gaps = 57/230 (24%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF ++QGEG AGR VF RF+GC+L +C +CDT + G Sbjct: 3 VTEIFFSIQGEGSRAGRPCVFVRFTGCDL-----------RCGYCDTAYAFHGGA----- 46 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124 ++D+ A L E R+ LTGGEP+LQ ++P L + L RG+E+AVET+G Sbjct: 47 DMDRAAILAE----VARHPARFVCLTGGEPMLQRELPDLARELLARGYEVAVETHGQ--- 99 Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENYIGF------DFERFSLQPMD 177 + +D + D+K G E+ ++ + P + + F DF R+S + + Sbjct: 100 -RPLDALPAEAIRVVDVKTPGSGEVATDLAYLDRLQPHDEVKFVVCSEDDF-RWSREVVR 157 Query: 178 GPFLEENTNLAISYCFQNPKW-------------------RLSVQTHKFI 208 LE + S P W RLS+Q HK + Sbjct: 158 RHALEGRVQVLFS-----PAWGQVAPRDLVRWMLESGLDARLSLQVHKVV 202 >gi|255066205|ref|ZP_05318060.1| radical SAM domain protein [Neisseria sicca ATCC 29256] gi|255049415|gb|EET44879.1| radical SAM domain protein [Neisseria sicca ATCC 29256] Length = 212 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 105/227 (46%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 ++++ L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 54 KFSMMSLSDILGR---LKTYTVRNIIITGGEPTIQPHLDTLLDALKAEGYFLCIETNGLK 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I+ E+++ V+ + + F + ER Sbjct: 111 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDVVAFCENMERKIRAR 164 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P +G +T I P W+LSVQTHK+ GI Sbjct: 165 HYYLSPCEQNGVMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211 >gi|110806555|ref|YP_690075.1| hypothetical protein SFV_2678 [Shigella flexneri 5 str. 8401] gi|110616103|gb|ABF04770.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] Length = 223 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 102/237 (43%), Gaps = 47/237 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I E+F TLQGEG G A+F R GC + W E +S T Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHAWEKLEDREVSLFSILAKTK 62 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + K G + + L +I Q T R+ V+TGGEP + +PL L K GF Sbjct: 63 ----ESDKWGAASSEDLLAVIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114 Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168 +ET+GT E P W+ VSPK L ++GG E+ + ++ +G D Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYEVLSQALERANEIKHPVGRVRDI 168 Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|300718116|ref|YP_003742919.1| Putative organic radical activating enzyme [Erwinia billingiae Eb661] gi|299063952|emb|CAX61072.1| Putative organic radical activating enzyme [Erwinia billingiae Eb661] Length = 223 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 104/234 (44%), Gaps = 41/234 (17%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLS-AQCRFCDTDFVGI 57 Y I E+F TLQGEG + G A+F R GC + W + D+L+ + D + Sbjct: 3 YPINEMFQTLQGEGFYTGVPAIFIRLQGCPVGCSWCDTKHTWDKLADRETSLGDILTKTV 62 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G N L +I T R+ V+TGGEP + PL L + GF +E Sbjct: 63 ETDAWGSANAAALLAVIANHGWTA----RHIVITGGEPCIHDLTPLTATLQQHGFSCQIE 118 Query: 118 TNGTIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY------------- 163 T+GT E + W+ VSPK + ++GG + V Q V + Sbjct: 119 TSGTHEVLCSAETWVTVSPK----VNMRGGYD---VLNQALVRADEVKHPVARQRDVEAL 171 Query: 164 ------IGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + D R +LQP+ ++ T L I C ++ WRLS+QTHK++ I Sbjct: 172 QALLATLNDDKPRIIALQPISQK--DDATKLCIETCIKH-NWRLSMQTHKYLNI 222 >gi|331664336|ref|ZP_08365242.1| putative Organic radical activating enzyme [Escherichia coli TA143] gi|284922713|emb|CBG35801.1| conserved hypothetical protein [Escherichia coli 042] gi|331058267|gb|EGI30248.1| putative Organic radical activating enzyme [Escherichia coli TA143] Length = 223 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 102/237 (43%), Gaps = 47/237 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I E+F TLQGEG G A+F R GC + W E +S T Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + K G + + L +I Q T R+ V+TGGEP + +PL L K GF Sbjct: 63 ----ESDKWGAASSEDLLAVIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114 Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168 +ET+GT E P W+ VSPK L ++GG E+ + ++ +G D Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYEVLSQALERANEIKHPVGRVRDI 168 Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIDTCIAR-NWRLSMQTHKYLNI 222 >gi|15803295|ref|NP_289328.1| hypothetical protein Z4089 [Escherichia coli O157:H7 EDL933] gi|25497213|pir||C85928 hypothetical protein ygcF [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12517243|gb|AAG57887.1|AE005505_5 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] Length = 223 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 102/237 (43%), Gaps = 47/237 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I E+F TLQGEG G A+F R GC + W E +S T Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + K G + + L +I Q T R+ V+TGGEP + +PL L K GF Sbjct: 63 ----ESDKWGAASSEBLLAVIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114 Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168 +ET+GT E P W+ VSPK L ++GG E+ + ++ +G D Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYEVLSQALERANEIKHPVGRVRDI 168 Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|283786677|ref|YP_003366542.1| hypothetical protein ROD_30371 [Citrobacter rodentium ICC168] gi|282950131|emb|CBG89767.1| conserved hypothetical protein [Citrobacter rodentium ICC168] Length = 223 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 104/233 (44%), Gaps = 39/233 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I E+F TLQGEG G A+F R GC + W E +S T Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLEDREVSLFSILAKTK 62 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + K G + + L +I Q T R+ V+TGGEP + +PL L K GF Sbjct: 63 ----ESDKWGAASSEDLLAVINRQGYTA----RHVVITGGEPCIHDLMPLTALLEKNGFS 114 Query: 114 IAVETNGTIE---PPQGIDWICVSPKA----GCDL---KIKGGQELKLVFPQV-NVSPEN 162 +ET+GT E P W+ VSPK G D+ ++ E+K +V ++ + Sbjct: 115 CQIETSGTHEVRCTPNT--WVTVSPKVNMRGGYDILSQALERANEIKHPVGRVRDIEALD 172 Query: 163 ----YIGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + D R +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 173 ELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|313126238|ref|YP_004036508.1| organic radical activating enzyme [Halogeometricum borinquense DSM 11551] gi|312292603|gb|ADQ67063.1| organic radical activating enzyme [Halogeometricum borinquense DSM 11551] Length = 257 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 19/132 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F +LQGEG G + F R SGCNL +C FCD+ + T Sbjct: 21 INELFASLQGEGKLVGVPSTFVRTSGCNL-----------RCWFCDSYHTSWEPTHAW-M 68 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP 124 VD++ + ++ + VLTGGEPL+ + PL++ L + G+ + VETNGT+ P Sbjct: 69 GVDEIVSAV------TARDPDHVVLTGGEPLIHDETAPLLERLAEHGYHVTVETNGTLVP 122 Query: 125 PQGIDWICVSPK 136 ID +SPK Sbjct: 123 DAPIDLASISPK 134 >gi|331674271|ref|ZP_08375031.1| putative Organic radical activating enzyme [Escherichia coli TA280] gi|331068365|gb|EGI39760.1| putative Organic radical activating enzyme [Escherichia coli TA280] Length = 223 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 102/237 (43%), Gaps = 47/237 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I E+F TLQGEG G A+F R GC + W E +S T Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + K G + + L +I Q T R+ V+TGGEP + +PL L K GF Sbjct: 63 ----ESDKWGAASSEDLLAVIGRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKNGFS 114 Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168 +ET+GT E P W+ VSPK L ++GG E+ + ++ +G D Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYEVLSQALERANEIKHPVGRVRDI 168 Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|74313345|ref|YP_311764.1| hypothetical protein SSON_2930 [Shigella sonnei Ss046] gi|73856822|gb|AAZ89529.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|323167196|gb|EFZ52913.1| radical SAM superfamily protein [Shigella sonnei 53G] Length = 223 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 102/237 (43%), Gaps = 47/237 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I E+F TLQGEG G A+F R GC + W E +S T Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + K G + + L +I Q T R+ V+TGGEP + +PL L K GF Sbjct: 63 ----ESDKWGAASSEDLLAVISRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114 Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168 +ET+GT E P W+ VSPK L ++GG ++ + ++ +G D Sbjct: 115 CQIETSGTHEVRCTPNT--WVTVSPK----LNMRGGYDVLSQALERANEIKHPVGRVRDI 168 Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|261378237|ref|ZP_05982810.1| radical SAM domain protein [Neisseria cinerea ATCC 14685] gi|269145315|gb|EEZ71733.1| radical SAM domain protein [Neisseria cinerea ATCC 14685] Length = 212 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 99/221 (44%), Gaps = 36/221 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G A+F R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAIFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 +++ L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 54 TFDIMSLSDILGR---LKTYAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCIETNGLK 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFP-QVNVSPENY-IGFDFERFSLQP 175 P ID++ SPK K I E+++V V EN R+ L P Sbjct: 111 PAPPQIDYVATSPKVCYADKYETNCIAEADEVRIVADGDVVAFCENMERKIRARRYYLSP 170 Query: 176 --MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 +G +T I P W+LSVQTHK+ GI Sbjct: 171 CEQNGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGI 211 >gi|325127637|gb|EGC50553.1| radical SAM domain protein [Neisseria meningitidis N1568] gi|325135881|gb|EGC58493.1| radical SAM domain protein [Neisseria meningitidis M0579] gi|325202682|gb|ADY98136.1| radical SAM domain protein [Neisseria meningitidis M01-240149] gi|325207572|gb|ADZ03024.1| radical SAM domain protein [Neisseria meningitidis NZ-05/33] Length = 212 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 54 TFGMMSLSDILGR---LKAYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I+ E+++ V+ + + F + ER Sbjct: 111 PAPPQIDYVATSPKACYAAKYENSCIETADEVRI------VADGDVLAFCENMERKIRAH 164 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P DG +T I P W+LSVQTHK+ GI Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211 >gi|294669279|ref|ZP_06734358.1| radical SAM domain protein [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308689|gb|EFE49932.1| radical SAM domain protein [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 212 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 101/227 (44%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 ++ + L+D++ R ++TGGEP +Q + L+ G+ + +ETNG Sbjct: 54 KFGMMSLSDILGR---LKTYAARNVIITGGEPTIQPHLDTLLDTFKAEGYFLCIETNGLK 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I E+++ V+ + + F + ER Sbjct: 111 PAPPQIDYVATSPKACYAAKYETNCITEADEVRI------VADGDVVAFCENMERKIRAR 164 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P DG +T I P W+LSVQTHK+ GI Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPAHWQLSVQTHKWAGI 211 >gi|109899267|ref|YP_662522.1| radical SAM family protein [Pseudoalteromonas atlantica T6c] gi|109701548|gb|ABG41468.1| Radical SAM [Pseudoalteromonas atlantica T6c] Length = 248 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 102/244 (41%), Gaps = 51/244 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF------ 54 + Y I E+F +LQGEG H G ++F R GC C +CDT Sbjct: 23 LNTYKINEVFESLQGEGAHTGVPSIFIRLQGC-----------PVGCPWCDTKHTWEIDQ 71 Query: 55 ---VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC----VLTGGEPLLQVDVPLIQAL 107 V + Q + EQ + K+ Y +LTGGEP + L L Sbjct: 72 NLKVAAPVVMAQNEDTAQWFEHTPEQLLALFKQHEYTASNIILTGGEPCMYDLTDLSSVL 131 Query: 108 NKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSP 160 + GF + +ET+GT E D W+ VSPK + + G ++ LK + N V+ Sbjct: 132 IENGFSVQIETSGTYEILTHPDTWVTVSPK----VNMPGKRDVLKSAMHRANEIKHPVAM 187 Query: 161 ENYI-----------GFDFER--FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207 E +I G D + LQP+ + T L I C WRLS+QTHKF Sbjct: 188 EKHIEELEHVLTLLVGSDNPKPLIYLQPISQQ--KRATELCIKTCIAR-NWRLSLQTHKF 244 Query: 208 IGIR 211 IGI Sbjct: 245 IGIE 248 >gi|161501996|ref|YP_001569108.1| hypothetical protein SARI_00012 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863343|gb|ABX19966.1| hypothetical protein SARI_00012 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 223 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 105/240 (43%), Gaps = 53/240 (22%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLW---SGREQDRLSAQCRFC 50 Y I E+F TLQGEG G A+F R GC + W S RE S + Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLYSILAKTK 62 Query: 51 DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110 ++D K G + + L +I Q + R+ V+TGGEP + +PL L K Sbjct: 63 ESD-------KWGAASSEDLLTVINRQ----DYTARHVVITGGEPCIHDLMPLTDLLEKS 111 Query: 111 GFEIAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG-- 165 GF +ET+GT E P W+ VSPK + ++GG ++ + ++ +G Sbjct: 112 GFSSQIETSGTHEVLCTPNT--WVTVSPK----VNMRGGYDVLTQALERANEIKHPVGRI 165 Query: 166 FDFERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 D E +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 166 RDIEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|37524702|ref|NP_928046.1| hypothetical protein plu0701 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784127|emb|CAE12996.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 223 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 99/240 (41%), Gaps = 51/240 (21%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDT 52 Y I EIF TLQGEG G A+F R GC + W + + + + T Sbjct: 2 FYPINEIFQTLQGEGFFTGVPAIFIRLQGCPVGCSWCDTKHTWEKEVEKQRTLETILLKT 61 Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF 112 + + + + Q+ L +Q T R+ V+TGGEP L +PL + L G+ Sbjct: 62 S----ESNEWSKASPKQITALFVQQKYTA----RHVVITGGEPCLYDLIPLTEELESLGY 113 Query: 113 EIAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER- 170 + +ET+GT W+ VSPK + ++GG + Q + N I + R Sbjct: 114 QCQIETSGTYHVKCSAATWVTVSPK----VNMRGGYRIL----QQALQRANEIKYPVARE 165 Query: 171 --------------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ EE T L I C WR S+QTHK++ I Sbjct: 166 RDIEALDELLATLNDNSSRIIALQPISQK--EEATRLCIETCIAR-NWRFSMQTHKYLNI 222 >gi|296104445|ref|YP_003614591.1| radical SAM domain-containing protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058904|gb|ADF63642.1| radical SAM domain-containing protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 223 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 99/234 (42%), Gaps = 41/234 (17%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I E+F TLQGEG G A+F R GC + C +CDT + Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51 Query: 64 RYNVDQLADLIE-EQWITGEKE------------GRYCVLTGGEPLLQVDVPLIQALNKR 110 LA E ++W G E R+ V+TGGEP + PL + L K Sbjct: 52 VSLFSVLAKTKESDKWGAGSAEDLLAIIGRQGWTARHVVITGGEPCIHDLTPLTELLEKN 111 Query: 111 GFEIAVETNGTIEPP-QGIDWICVSPKA----GCDL---KIKGGQELKLVFPQVN---VS 159 G+ +ET+GT E W+ VSPK G D+ ++ E+K +V Sbjct: 112 GYSCQIETSGTHEVRCSHTTWVTVSPKVNMRGGYDVLSQALERADEIKHPVGRVRDIEAL 171 Query: 160 PENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E E+ +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 172 DELLATLTDEKQRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|332173072|gb|AEE22326.1| Radical SAM domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 248 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 105/248 (42%), Gaps = 59/248 (23%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF------ 54 + Y I E+F +LQGEG H G ++F R GC C +CDT Sbjct: 23 LNTYKINEVFESLQGEGAHTGVPSIFIRLQGC-----------PVGCPWCDTKHTWEIDL 71 Query: 55 -VGIQGTKGGRYNVD----------QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103 + ++ + NVD QL DL + T +LTGGEP + L Sbjct: 72 NLKVEASVVMAQNVDTEQWFEHTPKQLLDLFTQHGYTASN----IILTGGEPCMYDLTDL 127 Query: 104 IQALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN---- 157 L + G+ + +ET+GT E D W+ VSPK + + G ++ LK + N Sbjct: 128 SSVLIENGYSVQIETSGTYEIMAHPDTWVTVSPK----VNMPGKRDVLKSALLRANEIKH 183 Query: 158 -VSPENYI-----------GFDFER--FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQ 203 V+ E +I G + + LQP+ + T L I C WRLS+Q Sbjct: 184 PVAMEKHIEELDQVLTLLEGSNTTKPLIYLQPISQQ--KRATELCIKTCIAR-NWRLSLQ 240 Query: 204 THKFIGIR 211 THKFIGI Sbjct: 241 THKFIGIE 248 >gi|72383130|ref|YP_292485.1| putative organic radical activating protein [Prochlorococcus marinus str. NATL2A] gi|72002980|gb|AAZ58782.1| possible organic radical activating enzyme [Prochlorococcus marinus str. NATL2A] Length = 213 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 94/232 (40%), Gaps = 53/232 (22%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F +LQGEG HAGR A F R + C + C +CDT + Sbjct: 7 VVECFHSLQGEGEHAGRSAYFIRLASCKV-----------GCPWCDTK----DSWNSELH 51 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA-------LNKRGFEIAVET 118 L DL + E+ + V+TGGEPL L + L K+ I +ET Sbjct: 52 PQQSLIDLSTQTAKAQEEGAAFVVITGGEPLHHNLDDLCKEIRKSTLNLEKKSIPIHLET 111 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQV-----------------NV 158 +G DWI +SPK ++ QELK+V + Sbjct: 112 SGVDMLSGKPDWITLSPKRHSPPRLDNLLSCQELKVVIQNAEDLLFAKTMADSIKNNGKI 171 Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P+ ++ +E EE LAI + NP WRLS+QTHK++G+ Sbjct: 172 KPQLFLQAGWEN-----------EEGQTLAIKFVKNNPDWRLSMQTHKWLGV 212 >gi|16761723|ref|NP_457340.1| hypothetical protein STY3080 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766257|ref|NP_461872.1| hypothetical protein STM2951 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143207|ref|NP_806549.1| hypothetical protein t2852 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161615872|ref|YP_001589837.1| hypothetical protein SPAB_03664 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550190|ref|ZP_02343947.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993197|ref|ZP_02574292.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231033|ref|ZP_02656091.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168242700|ref|ZP_02667632.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261911|ref|ZP_02683884.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463900|ref|ZP_02697817.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820338|ref|ZP_02832338.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443979|ref|YP_002042196.1| hypothetical protein SNSL254_A3167 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448254|ref|YP_002046911.1| radical SAM domain-containing protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472830|ref|ZP_03078814.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197250818|ref|YP_002147853.1| radical SAM domain-containing protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197261663|ref|ZP_03161737.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198243481|ref|YP_002216919.1| radical SAM domain-containing protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387574|ref|ZP_03214186.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205353891|ref|YP_002227692.1| hypothetical protein SG2855 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858211|ref|YP_002244862.1| hypothetical protein SEN2790 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213022667|ref|ZP_03337114.1| hypothetical protein Salmonelentericaenterica_08538 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213163461|ref|ZP_03349171.1| hypothetical protein Salmoneentericaenterica_26915 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424925|ref|ZP_03357675.1| hypothetical protein SentesTyphi_03996 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213648292|ref|ZP_03378345.1| hypothetical protein SentesTy_13994 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852988|ref|ZP_03382520.1| hypothetical protein SentesT_09066 [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224584735|ref|YP_002638533.1| hypothetical protein SPC_3001 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238909725|ref|ZP_04653562.1| hypothetical protein SentesTe_01135 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289811290|ref|ZP_06541919.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289829811|ref|ZP_06547326.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25511883|pir||AB0859 conserved hypothetical protein STY3080 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421502|gb|AAL21831.1| putative organic radical activating enzymes [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504024|emb|CAD06057.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138840|gb|AAO70409.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161365236|gb|ABX69004.1| hypothetical protein SPAB_03664 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402642|gb|ACF62864.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406558|gb|ACF66777.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194459194|gb|EDX48033.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195633215|gb|EDX51629.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197214521|gb|ACH51918.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197239918|gb|EDY22538.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197937997|gb|ACH75330.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604672|gb|EDZ03217.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205273672|emb|CAR38662.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324832|gb|EDZ12671.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328757|gb|EDZ15521.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334576|gb|EDZ21340.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338143|gb|EDZ24907.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342895|gb|EDZ29659.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349084|gb|EDZ35715.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710014|emb|CAR34369.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469262|gb|ACN47092.1| hypothetical protein SPC_3001 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248086|emb|CBG25921.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995084|gb|ACY89969.1| hypothetical protein STM14_3556 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159510|emb|CBW19029.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913972|dbj|BAJ37946.1| hypothetical protein STMDT12_C30030 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087368|emb|CBY97133.1| probable molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225630|gb|EFX50684.1| Queuosine Biosynthesis QueE Radical SAM [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131307|gb|ADX18737.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326624683|gb|EGE31028.1| Radical SAM domain containing protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629003|gb|EGE35346.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 223 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 106/241 (43%), Gaps = 55/241 (22%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLW---SGREQDRLSAQCRFC 50 Y I E+F TLQGEG G A+F R GC + W S RE S + Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTK 62 Query: 51 DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110 ++D K G + + L +I Q T R+ V+TGGEP + +PL L K Sbjct: 63 ESD-------KWGAASSEDLLAVINRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKS 111 Query: 111 GFEIAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVNVSPENYIG- 165 GF +ET+GT E P W+ VSPK + ++GG + L + N ++ +G Sbjct: 112 GFSCQIETSGTHEVRCTPNT--WVTVSPK----VNMRGGYDVLSQALERAN-EIKHPVGR 164 Query: 166 -FDFERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209 D E +LQP+ E+ T L I C WRLS+QTHK++ Sbjct: 165 VRDIEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLN 221 Query: 210 I 210 I Sbjct: 222 I 222 >gi|322614241|gb|EFY11173.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620945|gb|EFY17803.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624008|gb|EFY20842.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628253|gb|EFY25042.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633372|gb|EFY30114.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636051|gb|EFY32759.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639387|gb|EFY36075.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643751|gb|EFY40302.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648214|gb|EFY44680.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656959|gb|EFY53244.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658025|gb|EFY54293.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664126|gb|EFY60325.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322673792|gb|EFY69891.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677866|gb|EFY73929.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681040|gb|EFY77073.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685637|gb|EFY81631.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194776|gb|EFZ79963.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200478|gb|EFZ85557.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323205060|gb|EFZ90043.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207739|gb|EFZ92685.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323214808|gb|EFZ99556.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222537|gb|EGA06902.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226417|gb|EGA10625.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230704|gb|EGA14822.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234945|gb|EGA19031.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238984|gb|EGA23034.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244658|gb|EGA28664.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247274|gb|EGA31240.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251806|gb|EGA35671.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257493|gb|EGA41183.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263278|gb|EGA46815.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267530|gb|EGA51014.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272719|gb|EGA56125.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 223 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 106/241 (43%), Gaps = 55/241 (22%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLW---SGREQDRLSAQCRFC 50 Y I E+F TLQGEG G A+F R GC + W S RE S + Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTK 62 Query: 51 DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110 ++D K G + + L +I Q T R+ V+TGGEP + +PL L K Sbjct: 63 ESD-------KWGAASSEDLLAVINRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKS 111 Query: 111 GFEIAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVNVSPENYIG- 165 GF +ET+GT E P W+ VSPK + ++GG + L + N ++ +G Sbjct: 112 GFSCQIETSGTHEVCCTPNT--WVTVSPK----VNMRGGYDVLSQALERAN-EIKHPVGR 164 Query: 166 -FDFERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209 D E +LQP+ E+ T L I C WRLS+QTHK++ Sbjct: 165 VRDIEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLN 221 Query: 210 I 210 I Sbjct: 222 I 222 >gi|89073954|ref|ZP_01160460.1| putative organic radical activating enzyme [Photobacterium sp. SKA34] gi|89050282|gb|EAR55786.1| putative organic radical activating enzyme [Photobacterium sp. SKA34] Length = 222 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 103/236 (43%), Gaps = 43/236 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTD-FVGIQ 58 +Y I E+F T+QGEG G A+F R C + W +Q + + D + Sbjct: 1 MYKINEVFETIQGEGVFTGVPAIFVRLQVCPVGCSWCDTKQTWTAEPQDLANLDQIMAKT 60 Query: 59 GTKGGRYNVDQ--LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 G N+D + L+++Q T ++ V+TGGEP + PL QAL GF + Sbjct: 61 GDSPLWTNLDANGVVQLLQDQKYTA----KHVVITGGEPCIYDLRPLTQALEDAGFNCQI 116 Query: 117 ETNGT--IEPPQGIDWICVSPKAGCDLKI--------------------KGGQELKLVFP 154 ET+GT I+ + W+ VSPK K+ K ++L + Sbjct: 117 ETSGTSDIQTSENT-WVTVSPKINMKAKLPVLVSSLARANEIKHPVGTSKDIEQLDALID 175 Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 V + P+ I +LQP+ T L I C Q WRLS+QTHK++ I Sbjct: 176 GVTLKPDVTI-------ALQPISQK--PRATELCIETCIQR-NWRLSIQTHKYLAI 221 >gi|228473183|ref|ZP_04057938.1| radical SAM domain protein [Capnocytophaga gingivalis ATCC 33624] gi|228275333|gb|EEK14125.1| radical SAM domain protein [Capnocytophaga gingivalis ATCC 33624] Length = 200 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 99/223 (44%), Gaps = 43/223 (19%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + E F T+QGEG + G A F R +GC++ C +CD + Sbjct: 5 ILPLMEDFYTIQGEGFYRGTAAYFIRLAGCDV-----------GCHWCDVK-ESWDASVH 52 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R ++++A + ++TGGEPL+ PL + L +G +ET+G Sbjct: 53 PRVPIEEIAQ-------RALAHSKTIIITGGEPLMYNLQPLTELLKSKGARTHIETSGA- 104 Query: 123 EPPQGI-DWICVSPKAGCDLKIKGGQ---ELKLVFPQVNVSPENYIGFDF-ERFS----- 172 P G+ DWIC+SPK + Q ELK++ N+ F F E S Sbjct: 105 HPLTGVWDWICLSPKKNKRPLPEVHQRASELKMII-------YNHHDFLFAEEMSALTQP 157 Query: 173 -----LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP + E L + Y +NP+W++S+Q HK++ I Sbjct: 158 DCIRYLQP-EWSRRERMVPLIVDYVMENPQWKISLQMHKYLDI 199 >gi|116619443|ref|YP_821599.1| radical SAM domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116222605|gb|ABJ81314.1| Radical SAM domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 224 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 19/132 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F ++QGEG G +VF R SGCNL +C +CDT + + +G Sbjct: 3 IAELFYSIQGEGALLGVPSVFIRTSGCNL-----------RCSWCDTPYTSWR-PEGTDL 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 ++Q+ D + G R+ V+TGGEP++ D V L Q L R I +ET GT+ Sbjct: 51 TLEQILDEV------GAHPARHVVVTGGEPMIAPDIVALTQRLRARNLHITIETAGTVFE 104 Query: 125 PQGIDWICVSPK 136 P D + +SPK Sbjct: 105 PVACDLMSISPK 116 >gi|168235995|ref|ZP_02661053.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736116|ref|YP_002115902.1| radical SAM domain-containing protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204928010|ref|ZP_03219210.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194711618|gb|ACF90839.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290769|gb|EDY30123.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204322332|gb|EDZ07529.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 223 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 107/236 (45%), Gaps = 45/236 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLW---SGREQDRLSAQCRFC 50 Y I E+F TLQGEG G A+F R GC + W S RE S + Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTK 62 Query: 51 DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110 ++D K G + + L +I Q + R+ V+TGGEP + +PL L K Sbjct: 63 ESD-------KWGAASSEDLLAVINRQ----DYTARHVVITGGEPCIHDLMPLTDLLEKS 111 Query: 111 GFEIAVETNGTIE---PPQGIDWICVSPKA----GCDL---KIKGGQELKLVFPQV-NVS 159 GF +ET+GT E P W+ VSPK G D+ ++ E+K +V ++ Sbjct: 112 GFSCQIETSGTHEVRCTPNT--WVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIE 169 Query: 160 PEN----YIGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + D R +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 170 ALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|123441108|ref|YP_001005097.1| hypothetical protein YE0753 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088069|emb|CAL10857.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 223 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 103/233 (44%), Gaps = 39/233 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60 Y I E+F TLQGEG G A+F R GC + W + R D + ++ Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKEADREVDMQRIMVKTV 62 Query: 61 KGGRYNV---DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + + QL ++ +Q T R+ V+TGGEP + PL L + G+ +E Sbjct: 63 ESDAWATASEQQLLNIFSQQGYT----ARHVVITGGEPAIYDLFPLTTQLEQAGYSCQIE 118 Query: 118 TNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE--------------- 161 T+GT E W+ VSPK + ++GG LK++ + + E Sbjct: 119 TSGTHEVQCSAATWVTVSPK----VNMRGG--LKVLPQALQRADEIKHPVGRLRDIEALE 172 Query: 162 ---NYIGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + D +R +LQP+ +E T L I C WRLS+QTHK++ I Sbjct: 173 QLLETLTDDKKRIIALQPISQK--DEATKLCIETCIAK-NWRLSMQTHKYLNI 222 >gi|325133661|gb|EGC56318.1| radical SAM domain protein [Neisseria meningitidis M13399] gi|325143843|gb|EGC66158.1| radical SAM domain protein [Neisseria meningitidis M01-240013] gi|325206619|gb|ADZ02072.1| radical SAM domain protein [Neisseria meningitidis M04-240196] Length = 212 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 54 TFGMMSLSDILG---CLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I+ E+++ V+ + + F + ER Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDVVAFCENMERKIRAH 164 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P DG +T I P W+LSVQTHK+ GI Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGI 211 >gi|15921783|ref|NP_377452.1| hypothetical protein ST1490 [Sulfolobus tokodaii str. 7] gi|15622570|dbj|BAB66561.1| 212aa long conserved hypothetical protein [Sulfolobus tokodaii str. 7] Length = 212 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 49/140 (35%), Positives = 74/140 (52%), Gaps = 23/140 (16%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y I EIF ++QGEG G + F R +GC+L +C +CDT + Sbjct: 1 MVKYWISEIFTSIQGEGEVIGTPSNFIRLAGCHL-----------RCIWCDTKYAW-HKY 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 G +++Q+ D I+ K ++ +TGGEPLLQ +PL++AL ++ VET+G Sbjct: 49 DGEEMSIEQILDKID-------KRIKFTTITGGEPLLQDILPLVEALKSLNHKVLVETSG 101 Query: 121 TIEPPQG----IDWICVSPK 136 TI+P + +D VSPK Sbjct: 102 TIKPSKKLRELVDIFSVSPK 121 >gi|300724656|ref|YP_003713981.1| putative coenzyme PQQ synthesis protein with nitrogenase iron-molybdenum domain [Xenorhabdus nematophila ATCC 19061] gi|297631198|emb|CBJ91893.1| putative coenzyme PQQ synthesis protein with nitrogenase iron-molybdenum domain [Xenorhabdus nematophila ATCC 19061] Length = 223 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 108/243 (44%), Gaps = 57/243 (23%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLW---SGREQDRLSAQCRF 49 +Y I EIF TLQGEG G +VF R GC + W + ++Q + + Sbjct: 2 IYPINEIFQTLQGEGVFTGVPSVFVRLQGCPVGCSWCDTKHTWEKDADKQQVMENILLKT 61 Query: 50 CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 D+D G+ K QL ++ Q + R+ V+TGGEP L PL + L + Sbjct: 62 RDSDLWGVATAK-------QLINIFTRQGYSA----RHIVITGGEPCLYDLRPLTETLER 110 Query: 110 RGFEIAVETNGTIEPPQGID--WICVSPKAGCDLKIKGGQELKLVFPQ------------ 155 G++ +ET+GT Q D W+ VSPK +K++GG + V P+ Sbjct: 111 EGYQCQIETSGT-HSIQCSDKTWVTVSPK----VKMRGGYK---VLPEAMKRADEIKHPV 162 Query: 156 -----VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207 + E + D + +LQP+ EE T L I C WR S+QTHK+ Sbjct: 163 GRERDIEALDELLVMLDGKSSPVIALQPISQK--EEATRLCIETCIAR-NWRFSMQTHKY 219 Query: 208 IGI 210 + I Sbjct: 220 LHI 222 >gi|91070512|gb|ABE11419.1| putative organic radical activating enzyme [uncultured Prochlorococcus marinus clone HOT0M-3E5] Length = 225 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 100/234 (42%), Gaps = 51/234 (21%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 E F +LQGEG HAG+ A F R +GC + C +CDT K ++ Sbjct: 11 EQFHSLQGEGYHAGKSAFFIRLAGCKV-----------GCSWCDTK-NSWDEKKHPSISI 58 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGFEIAVETNG 120 +++ D I+ I +K +CV+TGGEPL +A+ K + +I +ET+G Sbjct: 59 EKIIDRIK---IARKKGASFCVITGGEPLQHNLDNFCKAIKKMTMGEEQKPMKIHIETSG 115 Query: 121 TIEPPQGIDWICVSPK----------AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 DWI +SPK C+ E++ + + + E + + Sbjct: 116 VNSISGSYDWITLSPKRHSPPKNYFLKNCNEIKIIINEIEDIEFAIQIKNETLKQYQISK 175 Query: 171 -----------FSLQPMDGPFLEENTN---LAISYCFQNPKWRLSVQTHKFIGI 210 F LQP N N LAI + NP W+LS+QTHK++ I Sbjct: 176 SEDGLKKEDKIFYLQPA-----WNNANGFSLAIDFVKNNPDWKLSLQTHKYLKI 224 >gi|191166820|ref|ZP_03028646.1| conserved hypothetical protein [Escherichia coli B7A] gi|190903191|gb|EDV62914.1| conserved hypothetical protein [Escherichia coli B7A] Length = 223 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 102/237 (43%), Gaps = 47/237 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I E+F TLQGEG G A+F R GC + W E +S T Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + K G + + L +I Q T R+ V+TGGEP + +PL L K GF Sbjct: 63 ----ESDKWGSASSEDLLAVIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLKKNGFS 114 Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168 +ET+GT E P W+ VSPK L ++GG ++ + ++ +G D Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYDVLSQALERANEIKHPVGRVRDI 168 Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|56460021|ref|YP_155302.1| organic radical activating protein [Idiomarina loihiensis L2TR] gi|56179031|gb|AAV81753.1| Organic radical activating enzyme [Idiomarina loihiensis L2TR] Length = 233 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 103/238 (43%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT---------DF 54 Y I EIF TLQGEG G ++F R GC + C +CDT D Sbjct: 13 YRINEIFETLQGEGTFTGVPSIFLRLQGCPV-----------GCPWCDTQHTWETNPTDQ 61 Query: 55 VGIQGTKGGRYNVDQLADLIEEQWITG-EKEG---RYCVLTGGEPLLQVDVPLIQALNKR 110 V I + +++ E I E+EG ++ V+TGGEP + +PL +AL + Sbjct: 62 VSIDALMAKTEASAKWSEMTAEDIIARFEQEGYSAKHVVITGGEPAMFDLLPLGKALEAK 121 Query: 111 GFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIKGGQELK---------LVFPQVNVSP 160 G+++ +ET+GT E W+ VSPK L + GG ++ + P Sbjct: 122 GYQLQIETSGTFELKVTDSTWVTVSPK----LDMPGGYLVRPDCMARANEIKHPIAMQKH 177 Query: 161 ENYIGFDFER--------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + ER LQP+ T LA+ C WRLSVQ HK++ I Sbjct: 178 IDALDSLLERCPPKADAIICLQPISQ--RPRATELAMKTCIAR-NWRLSVQMHKYLNI 232 >gi|261393100|emb|CAX50697.1| conserved hypothetical protein [Neisseria meningitidis 8013] gi|325203620|gb|ADY99073.1| radical SAM domain protein [Neisseria meningitidis M01-240355] Length = 212 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 54 TFGMMSLSDILG---CLKTYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I+ E+++ V+ + + F + ER Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDVLAFCENMERKIRAH 164 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P DG +T I P W+LSVQTHK+ GI Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211 >gi|330834175|ref|YP_004408903.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4] gi|329566314|gb|AEB94419.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4] Length = 210 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 74/154 (48%), Gaps = 28/154 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF ++QGEG GR + F R +GCNL +C +CDT K Sbjct: 3 YWIVEIFTSIQGEGTLIGRPSNFVRLAGCNL-----------RCVWCDT--------KNS 43 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 D IE+ ++ +TGGEPLLQ +PL +L +GF +A+ETNGT++ Sbjct: 44 WMREDGEPMEIEDILSKLSTSVKWTTITGGEPLLQDILPLAVSLKNKGFRVAIETNGTLK 103 Query: 124 PP----QGIDWICVSPKAGCDLKIKGGQELKLVF 153 P + +D VSPK + G LK F Sbjct: 104 PKPELRKVVDIFSVSPKL-----LNSGHRLKYDF 132 >gi|170726897|ref|YP_001760923.1| radical activating enzyme [Shewanella woodyi ATCC 51908] gi|169812244|gb|ACA86828.1| radical activating enzyme [Shewanella woodyi ATCC 51908] Length = 222 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 102/244 (41%), Gaps = 62/244 (25%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54 Y + E+F T+QGEG + G A+F R GC + C +CDT Sbjct: 3 YPVNEVFETIQGEGFYTGVPAIFVRLQGCPV-----------GCSWCDTKHTWELLDVNK 51 Query: 55 ------VGIQGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + + GT G +L ++++ T + V+TGGEP L + + Sbjct: 52 VQPEMVIQVDGTIGRWSELTTSELISFLKQKEFTAS----HVVITGGEPCLHDLTAMTEE 107 Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQV--------- 156 N G+ +ET+GT E W+ VSPK LK+K G V PQ Sbjct: 108 FNDAGYSTQIETSGTFEVHCSEKTWVTVSPK----LKMKAGLA---VLPQALKRANEIKH 160 Query: 157 NVSPENYI--------GFDF--ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHK 206 V+ ++I G D + LQP+ T LA+ C + WRLS+QTHK Sbjct: 161 PVATASHIDDLDELLNGVDLKGKTICLQPISQK--TRATELAMRVCIER-NWRLSIQTHK 217 Query: 207 FIGI 210 ++ I Sbjct: 218 YLDI 221 >gi|238750569|ref|ZP_04612069.1| hypothetical protein yrohd0001_3960 [Yersinia rohdei ATCC 43380] gi|238711217|gb|EEQ03435.1| hypothetical protein yrohd0001_3960 [Yersinia rohdei ATCC 43380] Length = 225 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 102/234 (43%), Gaps = 41/234 (17%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60 Y I E+F TLQGEG G A+F R GC + W + A R D + ++ Sbjct: 5 YPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKAANREVDLQRILVKTA 64 Query: 61 KG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G + Q+ D+ +Q T R+ V+TGGEP + PL L + G+ +E Sbjct: 65 ESDAWGNASEQQVLDIFIQQGYT----ARHVVITGGEPAIYDLRPLTSHLEQAGYSCQIE 120 Query: 118 TNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE--------------- 161 T+GT W+ VSPK + ++GG + V PQ + Sbjct: 121 TSGTHAVQCSPTTWVTVSPK----VNMRGGMK---VLPQALQRADEIKHPVGRLRDIEAL 173 Query: 162 ----NYIGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + D +R +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 174 ELLLQTLDDDKKRIIALQPISQK--EDATKLCIETCIAK-NWRLSMQTHKYLNI 224 >gi|212635182|ref|YP_002311707.1| Radical activating enzyme [Shewanella piezotolerans WP3] gi|212556666|gb|ACJ29120.1| Radical activating enzyme [Shewanella piezotolerans WP3] Length = 222 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 107/238 (44%), Gaps = 50/238 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y + E+F T+QGEG G A+F R GC + W E++R++ + Sbjct: 3 YPVNEVFETIQGEGYFTGVPAIFVRLQGCPVGCAWCDTKHTWDVIEENRVAPEL------ 56 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKE----GRYCVLTGGEPLLQVDVPLIQALNK 109 + + GT G + ++L EQ + K ++ V+TGGEP + L++ Sbjct: 57 VIQVDGTIG------RWSELSSEQLVAAFKSKGFTAKHIVITGGEPCMYDLTEFTHYLHQ 110 Query: 110 RGFEIAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPEN 162 G++ +ET+GT E W+ VSPK + +KGG + L + N ++ N Sbjct: 111 MGYQTQIETSGTFEVACDSGTWVTVSPK----INMKGGYKVLAQALERANEIKHPIATRN 166 Query: 163 Y----------IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + I + + LQP+ T LA+ C + WRLS+QTHK++ I Sbjct: 167 HIDELDELLADIDINDKTVCLQPISQK--ARATELAMKTCIER-NWRLSIQTHKYLDI 221 >gi|298207940|ref|YP_003716119.1| hypothetical protein CA2559_06800 [Croceibacter atlanticus HTCC2559] gi|83850581|gb|EAP88449.1| hypothetical protein CA2559_06800 [Croceibacter atlanticus HTCC2559] Length = 210 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 33/219 (15%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 K+ + E F T+QGEG H G A F R GC++ C +CD + Sbjct: 14 KMLPLMEEFYTIQGEGYHKGTAAYFIRIGGCDV-----------GCHWCDVK----ESWD 58 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 ++ ++ E K + V+TGGEPL L Q L G + +ET+G Sbjct: 59 AEKHPPTATERIVSE----AVKYSKTIVVTGGEPLTWDMTLLTQMLKAEGAQTHIETSGA 114 Query: 122 IEPPQGIDWICVSPKAGCDLKI------KGGQELKLVF---PQVNVSPENYIGFDFE-RF 171 DWIC+SPK LK+ + ELK++ + + E + + Sbjct: 115 YTLTGKWDWICLSPK---KLKLPTKEVYEKANELKVIIFNKHDLKFAEEQAAKVNKDCIL 171 Query: 172 SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP + ++ L + + NP+W++S+QTHK++ I Sbjct: 172 YLQP-EWSVRDKVVPLIVDFVMANPQWKVSLQTHKYLNI 209 >gi|218555326|ref|YP_002388239.1| hypothetical protein ECIAI1_2883 [Escherichia coli IAI1] gi|300820561|ref|ZP_07100712.1| radical SAM domain protein [Escherichia coli MS 119-7] gi|309795241|ref|ZP_07689660.1| radical SAM domain protein [Escherichia coli MS 145-7] gi|331669510|ref|ZP_08370356.1| putative Organic radical activating enzyme [Escherichia coli TA271] gi|331678753|ref|ZP_08379427.1| putative Organic radical activating enzyme [Escherichia coli H591] gi|218362094|emb|CAQ99703.1| conserved hypothetical protein [Escherichia coli IAI1] gi|300526825|gb|EFK47894.1| radical SAM domain protein [Escherichia coli MS 119-7] gi|308121212|gb|EFO58474.1| radical SAM domain protein [Escherichia coli MS 145-7] gi|320202418|gb|EFW76988.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli EC4100B] gi|331063178|gb|EGI35091.1| putative Organic radical activating enzyme [Escherichia coli TA271] gi|331073583|gb|EGI44904.1| putative Organic radical activating enzyme [Escherichia coli H591] Length = 223 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 102/237 (43%), Gaps = 47/237 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I E+F TLQGEG G A+F R GC + W E +S T Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + K G + + L +I Q T R+ V+TGGEP + +PL L K GF Sbjct: 63 ----ESDKWGSASSEDLLAVIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114 Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168 +ET+GT E P W+ VSPK L ++GG ++ + ++ +G D Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYDVLSQALERANEIKHPVGRVRDI 168 Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|149276391|ref|ZP_01882535.1| hypothetical protein PBAL39_01687 [Pedobacter sp. BAL39] gi|149232911|gb|EDM38286.1| hypothetical protein PBAL39_01687 [Pedobacter sp. BAL39] Length = 193 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 36/215 (16%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 E F T+QGEG + G+ A F R GC++ C +CD + + + Sbjct: 2 EEFYTIQGEGFNTGKAAYFIRLGGCDV-----------GCHWCDVK----ESWDAELHPL 46 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQG 127 D++E+ G+ V+TGGEPL+ L + L +R +ET+G Sbjct: 47 TAADDIVEK---ADSFPGKAVVITGGEPLIYNLDYLTRKLRERNILTFIETSGAYPLSGS 103 Query: 128 IDWICVSPKAGCDLKIKG--------GQELK-LVFPQVNVS-PENYIGFDFE--RFSLQP 175 DWIC+SPK K K ELK ++F + + E Y + + LQP Sbjct: 104 WDWICLSPK-----KFKAPRPDITPFANELKVIIFNKSDFKWAEQYAETVSKNCKLYLQP 158 Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + +E T + I Y NPKW +S+QTHK++ I Sbjct: 159 -EWSKSKEITPMIIEYVMANPKWEISLQTHKYLNI 192 >gi|269138400|ref|YP_003295100.1| radical SAM domain protein [Edwardsiella tarda EIB202] gi|267984060|gb|ACY83889.1| radical SAM domain protein [Edwardsiella tarda EIB202] gi|304558427|gb|ADM41091.1| Queuosine Biosynthesis QueE Radical SAM [Edwardsiella tarda FL6-60] Length = 223 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 102/246 (41%), Gaps = 65/246 (26%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R GC + C +CD+ Q + Sbjct: 3 YPINEIFQSLQGEGFYTGVPAVFIRLQGCPV-----------GCSWCDSQHTWHQRPECQ 51 Query: 64 RYNVDQLADLIEEQWITGEKE--------------------GRYCVLTGGEPLLQVDVPL 103 LA ++E+ T E E R+ V+TGGEP + +PL Sbjct: 52 ----ADLAQIVEK---TAESEAWASADAAALVALLRQRGYQARHVVITGGEPCMHDLLPL 104 Query: 104 IQALNKRGFEIAVETNGTIEPPQ--GIDWICVSPKAGCDLKIKGGQEL---------KLV 152 AL + G+ +ET+GT P + W+ VSPK G ++GG + ++ Sbjct: 105 TTALEQGGYRCQIETSGT-HPVRCSAQTWVTVSPKVG----MRGGMTVLTDALRRANEIK 159 Query: 153 FPQVNVSPENYIGFDFERF--------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQT 204 P + R +LQP+ EE T L I C WRLS+QT Sbjct: 160 HPVARARDIEALDALLARLDGELPPVVALQPISCK--EEATRLCIETCLAR-NWRLSMQT 216 Query: 205 HKFIGI 210 HK++ I Sbjct: 217 HKYLNI 222 >gi|261401297|ref|ZP_05987422.1| radical SAM domain protein [Neisseria lactamica ATCC 23970] gi|269208675|gb|EEZ75130.1| radical SAM domain protein [Neisseria lactamica ATCC 23970] Length = 212 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 54 TFGMMSLSDILGR---LKAYAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I E+++ V+ + + F + ER Sbjct: 111 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRI------VADGDVLAFCENMERKIRAR 164 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P +G +T I P W+LSVQTHK+ GI Sbjct: 165 HYYLSPCEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211 >gi|161869455|ref|YP_001598622.1| hypothetical protein NMCC_0466 [Neisseria meningitidis 053442] gi|161595008|gb|ABX72668.1| conserved hypothetical protein [Neisseria meningitidis 053442] Length = 212 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 54 TFGMMSLSDILG---CLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I+ E+++ V+ + + F + ER Sbjct: 111 PAPPQIDYVATSPKACYAAKYENSCIETADEVRI------VADGDVLAFCENMERKIRAH 164 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P DG +T I P W+LSVQTHK+ GI Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211 >gi|319409907|emb|CBY90232.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594] Length = 212 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 54 TFGMMSLSDILG---CLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I+ E+++ V+ + + F + ER Sbjct: 111 PAPPQIDYVATSPKACYAAKYENSCIETADEVRI------VADGDVLAFCENMERKIRAH 164 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P DG +T I P W+LSVQTHK+ GI Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGI 211 >gi|325103801|ref|YP_004273455.1| Radical SAM domain protein [Pedobacter saltans DSM 12145] gi|324972649|gb|ADY51633.1| Radical SAM domain protein [Pedobacter saltans DSM 12145] Length = 207 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 28/216 (12%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + E F T+QGEG + G+ A F R GC++ C +CD ++ + Sbjct: 11 MLPLMEEFYTIQGEGFNTGKAAYFIRLGGCDV-----------GCHWCD-----VKESWD 54 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + AD I E + G+ V+TGGEPLL L L ++G +ET+G Sbjct: 55 AELHPLTSADKIVEN--AEKYPGKAVVITGGEPLLYNLDYLTAKLKEKGILTFIETSGAY 112 Query: 123 EPPQGIDWICVSPK---AGCDLKIKGGQELKL-VFPQVNV----SPENYIGFDFERFSLQ 174 DW+C+SPK + + ELK+ VF + + + +G D + LQ Sbjct: 113 PISGSWDWVCLSPKKFKSPSPNIAQHADELKIIVFNKSDFEWAEAHARTVG-DKCKLYLQ 171 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P + ++ L I Y +NPKW +S+QTHK++ I Sbjct: 172 P-EWSKSQDMLPLIIEYVKENPKWEISLQTHKYLNI 206 >gi|82545074|ref|YP_409021.1| hypothetical protein SBO_2656 [Shigella boydii Sb227] gi|187733920|ref|YP_001881485.1| hypothetical protein SbBS512_E3099 [Shigella boydii CDC 3083-94] gi|193065022|ref|ZP_03046097.1| conserved hypothetical protein [Escherichia coli E22] gi|209920225|ref|YP_002294309.1| hypothetical protein ECSE_3034 [Escherichia coli SE11] gi|256019438|ref|ZP_05433303.1| hypothetical protein ShiD9_11027 [Shigella sp. D9] gi|260845423|ref|YP_003223201.1| hypothetical protein ECO103_3320 [Escherichia coli O103:H2 str. 12009] gi|260856887|ref|YP_003230778.1| hypothetical protein ECO26_3847 [Escherichia coli O26:H11 str. 11368] gi|260869456|ref|YP_003235858.1| hypothetical protein ECO111_3501 [Escherichia coli O111:H- str. 11128] gi|300815807|ref|ZP_07096031.1| radical SAM domain protein [Escherichia coli MS 107-1] gi|300923910|ref|ZP_07139923.1| radical SAM domain protein [Escherichia coli MS 182-1] gi|301325508|ref|ZP_07218983.1| radical SAM domain protein [Escherichia coli MS 78-1] gi|81246485|gb|ABB67193.1| conserved hypothetical protein [Shigella boydii Sb227] gi|187430912|gb|ACD10186.1| conserved hypothetical protein [Shigella boydii CDC 3083-94] gi|192927319|gb|EDV81938.1| conserved hypothetical protein [Escherichia coli E22] gi|209913484|dbj|BAG78558.1| conserved hypothetical protein [Escherichia coli SE11] gi|257755536|dbj|BAI27038.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368] gi|257760570|dbj|BAI32067.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009] gi|257765812|dbj|BAI37307.1| conserved predicted protein [Escherichia coli O111:H- str. 11128] gi|300419842|gb|EFK03153.1| radical SAM domain protein [Escherichia coli MS 182-1] gi|300531736|gb|EFK52798.1| radical SAM domain protein [Escherichia coli MS 107-1] gi|300847675|gb|EFK75435.1| radical SAM domain protein [Escherichia coli MS 78-1] gi|320183542|gb|EFW58388.1| Queuosine Biosynthesis QueE Radical SAM [Shigella flexneri CDC 796-83] gi|323155006|gb|EFZ41198.1| radical SAM superfamily protein [Escherichia coli EPECa14] gi|323159909|gb|EFZ45879.1| radical SAM superfamily protein [Escherichia coli E128010] gi|323180206|gb|EFZ65758.1| radical SAM superfamily protein [Escherichia coli 1180] gi|324016296|gb|EGB85515.1| radical SAM domain protein [Escherichia coli MS 117-3] gi|332092167|gb|EGI97245.1| radical SAM superfamily protein [Shigella boydii 3594-74] gi|332102910|gb|EGJ06256.1| conserved hypothetical protein [Shigella sp. D9] Length = 223 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 102/237 (43%), Gaps = 47/237 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I E+F TLQGEG G A+F R GC + W E +S T Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + K G + + L +I Q T R+ V+TGGEP + +PL L K GF Sbjct: 63 ----ESDKWGAASSEDLLAVIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114 Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168 +ET+GT E P W+ VSPK L ++GG ++ + ++ +G D Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYDVLSQALERANEIKHPVGRVRDI 168 Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|227827777|ref|YP_002829557.1| radical SAM protein [Sulfolobus islandicus M.14.25] gi|227830487|ref|YP_002832267.1| radical SAM protein [Sulfolobus islandicus L.S.2.15] gi|229579299|ref|YP_002837697.1| Radical SAM domain protein [Sulfolobus islandicus Y.G.57.14] gi|229581941|ref|YP_002840340.1| Radical SAM domain protein [Sulfolobus islandicus Y.N.15.51] gi|229585048|ref|YP_002843550.1| Radical SAM domain protein [Sulfolobus islandicus M.16.27] gi|238619949|ref|YP_002914775.1| Radical SAM domain protein [Sulfolobus islandicus M.16.4] gi|284997981|ref|YP_003419748.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5] gi|227456935|gb|ACP35622.1| Radical SAM domain protein [Sulfolobus islandicus L.S.2.15] gi|227459573|gb|ACP38259.1| Radical SAM domain protein [Sulfolobus islandicus M.14.25] gi|228010013|gb|ACP45775.1| Radical SAM domain protein [Sulfolobus islandicus Y.G.57.14] gi|228012657|gb|ACP48418.1| Radical SAM domain protein [Sulfolobus islandicus Y.N.15.51] gi|228020098|gb|ACP55505.1| Radical SAM domain protein [Sulfolobus islandicus M.16.27] gi|238381019|gb|ACR42107.1| Radical SAM domain protein [Sulfolobus islandicus M.16.4] gi|284445876|gb|ADB87378.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5] gi|323477585|gb|ADX82823.1| Radical SAM domain protein [Sulfolobus islandicus HVE10/4] Length = 208 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 103/228 (45%), Gaps = 42/228 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + EIF ++QGEG G + F R + CNL +C +CDT + GT+ Sbjct: 3 YRVIEIFTSVQGEGEVIGTPSNFIRLATCNL-----------RCVWCDTKYSWEIGTE-- 49 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 +D++ I+ K+ R +TGGEPLLQ VPL + L G +I +ETNGTI+ Sbjct: 50 -MTIDEIIAKID-------KKIRTTTITGGEPLLQNVVPLAKELKSIGHKIVIETNGTIK 101 Query: 124 PPQG----IDWICVSPK---AGCDLKIKGGQELKLVFPQVNVSPENYI----------GF 166 P + ID VSPK +G LK + + V V P I Sbjct: 102 PSEELRKIIDVFSVSPKLSNSGHKLKYDFSDDWATYYKFVIVYPNKDIDEVIKFVESQNI 161 Query: 167 DFERFSLQPMDG---PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + + LQP DG ++ + + ++R+ Q H+ IG+R Sbjct: 162 NPRKVILQP-DGNRSDYINAINEIVQIVLDRGLQFRVLPQLHRIIGVR 208 >gi|327543167|gb|EGF29602.1| radical SAM domain protein [Rhodopirellula baltica WH47] Length = 272 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 68/132 (51%), Gaps = 19/132 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E F++ QGEG G +VF R SGCNL +C FCDT + + +G R Sbjct: 47 ISETFVSRQGEGELTGTESVFIRTSGCNL-----------RCWFCDTPYASWK-PEGTRQ 94 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 ++ L L+ E + +Y VLTGGEPL+ V LI L G + +ET GT++P Sbjct: 95 TIEDLLQLVAESGV------KYVVLTGGEPLIAKGIVSLIDQLRSAGNHVTIETAGTVDP 148 Query: 125 PQGIDWICVSPK 136 D + +SPK Sbjct: 149 GARCDLLSLSPK 160 >gi|90408082|ref|ZP_01216253.1| putative organic radical activating enzyme [Psychromonas sp. CNPT3] gi|90310839|gb|EAS38953.1| putative organic radical activating enzyme [Psychromonas sp. CNPT3] Length = 225 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 102/237 (43%), Gaps = 47/237 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL----------WSGREQDRLSAQCRFCDTD 53 Y + EIF T+QGEG H G A+F R GC++ WS E D++ + Sbjct: 5 YKVNEIFQTIQGEGVHTGCAAIFIRLQGCDVGCAWCDTKHTWSANENDKVP-------LN 57 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 V ++ D A+ I + E + ++TGGEP + PL L+ GF+ Sbjct: 58 LVTDLSNSSAQW-ADVSAEHILAEIKNLEYTAKLVIITGGEPCIFDLRPLTALLHAHGFQ 116 Query: 114 IAVETNGTIEPPQGID---WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF--DF 168 +ET+GT P +D W+ VSPK + ++ +E+ L Q ++ +G D Sbjct: 117 TQIETSGTY--PILVDAKSWVTVSPK----VNMRAKKEVLLSALQRADEIKHPVGTQKDI 170 Query: 169 ERFS---------------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E+ LQP+ T L + C WRLSVQ HK++ I Sbjct: 171 EQLDALLARLGDTHNKTICLQPISQK--ANATALCMRTCIAR-NWRLSVQLHKYLDI 224 >gi|15676436|ref|NP_273574.1| hypothetical protein NMB0529 [Neisseria meningitidis MC58] gi|7225754|gb|AAF40959.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|316985383|gb|EFV64331.1| radical SAM superfamily protein [Neisseria meningitidis H44/76] gi|325139736|gb|EGC62270.1| radical SAM domain protein [Neisseria meningitidis CU385] gi|325200783|gb|ADY96238.1| radical SAM domain protein [Neisseria meningitidis H44/76] Length = 212 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 103/229 (44%), Gaps = 52/229 (22%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV--GIQGTK 61 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ G+ G Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLTFGMMG-- 59 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 60 --------LSDILGR---LKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNG 108 Query: 121 TIEPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER--- 170 P ID++ SPKA K I+ E+++ V+ + + F + ER Sbjct: 109 LNPAPPQIDYVATSPKACYAAKYENSCIETADEVRI------VADGDVLAFCENMERKIR 162 Query: 171 ---FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P DG +T I P W+LSVQTHK+ GI Sbjct: 163 AHHYYLSPCEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGI 211 >gi|121634324|ref|YP_974569.1| hypothetical protein NMC0468 [Neisseria meningitidis FAM18] gi|120866030|emb|CAM09768.1| hypothetical protein NMC0468 [Neisseria meningitidis FAM18] gi|325129656|gb|EGC52471.1| radical SAM domain protein [Neisseria meningitidis OX99.30304] gi|325131671|gb|EGC54376.1| radical SAM domain protein [Neisseria meningitidis M6190] gi|325137687|gb|EGC60264.1| radical SAM domain protein [Neisseria meningitidis ES14902] gi|325141739|gb|EGC64192.1| radical SAM domain protein [Neisseria meningitidis 961-5945] gi|325197741|gb|ADY93197.1| radical SAM domain protein [Neisseria meningitidis G2136] Length = 212 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGIPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 54 TFGMMSLSDILG---CLKTYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I+ E+++ V+ + + F + ER Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDVLAFCENMERKIRAH 164 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P DG +T I P W+LSVQTHK+ GI Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGI 211 >gi|254669979|emb|CBA04660.1| conserved hypothetical protein [Neisseria meningitidis alpha153] Length = 212 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 103/229 (44%), Gaps = 52/229 (22%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV--GIQGTK 61 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ G+ G Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLTFGMMG-- 59 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 60 --------LSDILGR---LKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNG 108 Query: 121 TIEPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER--- 170 P ID++ SPKA K I+ E+++ V+ + + F + ER Sbjct: 109 LNPAPPQIDYVATSPKACYAAKYENSCIETADEVRI------VADGDVLAFCENMERKIR 162 Query: 171 ---FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P DG +T I P W+LSVQTHK+ GI Sbjct: 163 AHHYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211 >gi|293412124|ref|ZP_06654847.1| conserved hypothetical protein [Escherichia coli B354] gi|291468895|gb|EFF11386.1| conserved hypothetical protein [Escherichia coli B354] Length = 223 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 102/237 (43%), Gaps = 47/237 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I E+F TLQGEG G A+F R GC + W E +S T Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + K G + + L +I Q T R+ V+TGGEP + +PL L K GF Sbjct: 63 ----ESDKWGAASSEDLLAVIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114 Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168 +ET+GT E P W+ VSPK L ++GG ++ + ++ +G D Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYKVLSQALERANEIKHPVGRVRDI 168 Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIDTCIAR-NWRLSMQTHKYLNI 222 >gi|268680497|ref|YP_003304928.1| radical SAM protein [Sulfurospirillum deleyianum DSM 6946] gi|268618528|gb|ACZ12893.1| Radical SAM domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 192 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 93/217 (42%), Gaps = 33/217 (15%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + E+F ++QGEG G ++F R GCNL C FCD + Sbjct: 1 MLKVVEMFYSIQGEGTQVGVPSIFIRLYGCNL-----------SCSFCDEEL------HK 43 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG-T 121 G Y ++E ++TGGEP + I L + ++VETNG Sbjct: 44 GAYEELSFDAVLER---IKAYPSMNVIITGGEPSIYDLNGFIDFLQAHMYAVSVETNGYN 100 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDFERFS---LQPM 176 +WI SPK + G E+K + VS ++ + DF+ + +QP Sbjct: 101 FSNIASANWITYSPKDWNHIAKHGYDEVKFI-----VSKDSDVSKLLDFKSYKPLFIQPQ 155 Query: 177 DGPFLEENTNLA--ISYCFQNPKWRLSVQTHKFIGIR 211 + NLA I++ NP++ LSVQ HKF+G+ Sbjct: 156 NNAHTPNQENLAFCIAFVKANPRFILSVQLHKFLGVE 192 >gi|238919074|ref|YP_002932588.1| hypothetical protein NT01EI_1143 [Edwardsiella ictaluri 93-146] gi|238868642|gb|ACR68353.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 223 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 101/246 (41%), Gaps = 65/246 (26%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I E+F +LQGEG + G A+F R GC + C +CD+ Q Sbjct: 3 YPINEVFQSLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDSQHTWHQ----- 46 Query: 64 RYNVDQLADLIEEQWITGEKE--------------------GRYCVLTGGEPLLQVDVPL 103 ++ ADL + T E E R V+TGGEP + +PL Sbjct: 47 --RPERQADLAQIVEKTAESEAWASADAAALVALLRQRGYQARRVVITGGEPCMYDLLPL 104 Query: 104 IQALNKRGFEIAVETNGTIEPPQ--GIDWICVSPKAGCDLKIKGGQEL---------KLV 152 AL + G+ +ET+GT P + W+ VSPK G ++GG E+ ++ Sbjct: 105 TTALEQGGYRCQIETSGT-HPVRCSAQTWVTVSPKVG----MRGGMEVLTDALRRANEIK 159 Query: 153 FPQVNVSPENYIGFDFERF--------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQT 204 P + R +LQP+ EE T L I C WRLS+QT Sbjct: 160 HPVARARDIEALDALLARLDGELPPVVALQPISCK--EEATRLCIETCLAR-NWRLSMQT 216 Query: 205 HKFIGI 210 HK++ I Sbjct: 217 HKYLNI 222 >gi|123969432|ref|YP_001010290.1| putative organic radical activating protein [Prochlorococcus marinus str. AS9601] gi|123199542|gb|ABM71183.1| possible organic radical activating enzyme [Prochlorococcus marinus str. AS9601] Length = 225 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 99/234 (42%), Gaps = 51/234 (21%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 E F +LQGEG HAG+ A F R +GC + C +CDT K ++ Sbjct: 11 EQFHSLQGEGYHAGKSAFFVRLAGCKV-----------GCSWCDTK-NSWDEKKHPSISI 58 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGFEIAVETNG 120 +++ D I+ I +K +CV+TGGEPL +A+ K + +I +ET+G Sbjct: 59 EKIIDRIK---IARKKGASFCVITGGEPLQHNLDNFCKAIKKMTMGEEQKPIKIHIETSG 115 Query: 121 TIEPPQGIDWICVSPK----------AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 DWI +SPK C+ E++ + + + E + Sbjct: 116 VNSISGSYDWITLSPKRHSPPKNYFLKNCNEIKIIINEIEDIEFAIQIKKETLKQHQLSK 175 Query: 171 -----------FSLQPMDGPFLEENTN---LAISYCFQNPKWRLSVQTHKFIGI 210 F LQP N N LAI + NP W+LS+QTHK++ I Sbjct: 176 GEDGLKKEDKIFYLQPA-----WNNANGFSLAIDFVKNNPDWKLSLQTHKYLKI 224 >gi|282600228|ref|ZP_05973516.2| radical SAM domain protein [Providencia rustigianii DSM 4541] gi|282566364|gb|EFB71899.1| radical SAM domain protein [Providencia rustigianii DSM 4541] Length = 230 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 102/232 (43%), Gaps = 35/232 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60 Y I EIF TLQGEG G AVF R GC + W +Q + + ++ Sbjct: 10 YPINEIFQTLQGEGVFTGVPAVFIRLQGCPVGCSWCDTKQTWDKEPAKESTLGDIALKTQ 69 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + + LI+ +G ++ V+TGGEP + PL + L GF+ +ET+G Sbjct: 70 DNDLWAMADAEALIQLMQQSG-YTAKHIVITGGEPCIYDLNPLTETLETNGFQCQIETSG 128 Query: 121 TIEPPQGID--WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER-------- 170 T P + W+ VSPK G +KGG LK++ V+ + E E+ Sbjct: 129 TY-PILCTEKTWVTVSPKVG----MKGG--LKVLNQAVDRANEIKHPVAREKDIEALDQL 181 Query: 171 -----------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +LQP+ T L I C Q WRLS+QTHK++ I+ Sbjct: 182 LARRTNNAPLIVALQPISQKV--SATKLCIDTCIQR-NWRLSIQTHKYLNIQ 230 >gi|307150184|ref|YP_003885568.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7822] gi|306980412|gb|ADN12293.1| Radical SAM domain protein [Cyanothece sp. PCC 7822] Length = 205 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 96/225 (42%), Gaps = 47/225 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I E F ++QGEG G A F R GC+++ C +CD + Sbjct: 11 YPIVETFHSIQGEGAWTGVSAFFIRLGGCDVY-----------CPWCDQK----ESWNPK 55 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R+ + +L+E + V+TGGEPL+ +PL + L G + +ET+G+ Sbjct: 56 RHPHQSVENLLESAKMANPA---IVVITGGEPLMHDLIPLTRELQLLGLRVHLETSGSHP 112 Query: 124 PPQGIDWICVSPKAG-----------CDLKIKGGQELKLVFPQVNVS--PENYIGFDFER 170 W+ SPK +LK+ E L + Q + P + + Sbjct: 113 FSGNFHWVTFSPKPYKRPHESIYEQVNELKVVIANEEDLHWAQRQAAKLPSTVVKY---- 168 Query: 171 FSLQPMDGPFLEENT----NLAISYCFQNPKWRLSVQTHKFIGIR 211 LQP E NT L + ++P+WR+S+QTHKF+ +R Sbjct: 169 --LQP------EWNTPNSGALIFEFVLKHPQWRMSLQTHKFLNVR 205 >gi|254431688|ref|ZP_05045391.1| radical SAM [Cyanobium sp. PCC 7001] gi|197626141|gb|EDY38700.1| radical SAM [Cyanobium sp. PCC 7001] Length = 209 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 96/218 (44%), Gaps = 31/218 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F +LQGEG H G+ A F R +GC + C +CDT + Sbjct: 11 VVEAFHSLQGEGLHTGQSAFFIRLAGCRV-----------GCSWCDTK----HSWPMAGH 55 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 L+ L + + + V+TGGEPL L L G + +ET+G +EP Sbjct: 56 AEWSLSGLADAALAARQAGAGFVVITGGEPLHHDLTALCALLRSHGLRLHLETSG-VEPL 114 Query: 126 QG-IDWICVSPKAGC---DLKIKGGQELKLV--------FPQVNVSPENYIGFDFERFSL 173 +G +DWI +SPK D I+ ELK+V F N G + L Sbjct: 115 RGQVDWIVLSPKRHQPPRDDLIRLCNELKVVVHSHDDLDFALAMARQANASG-NHPALLL 173 Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 QP G E LA+ + + WRLS+Q+HK++ IR Sbjct: 174 QP--GWESTEGQRLALDFVRSHADWRLSLQSHKWLAIR 209 >gi|59713678|ref|YP_206453.1| hypothetical protein VF_A0495 [Vibrio fischeri ES114] gi|59481926|gb|AAW87565.1| conserved protein [Vibrio fischeri ES114] Length = 226 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 102/238 (42%), Gaps = 47/238 (19%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL----------WSGREQDRLSAQCRFCDT 52 L+ I E+F T+QGEG G ++F R GC + W D+ Q T Sbjct: 5 LFKINELFETIQGEGTFTGVPSIFLRLQGCPVGCSWCDTKQTWDVELSDKTDLQTILAKT 64 Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF 112 + + Q+ +++E Q T ++ V+TGGEP + L Q L + G+ Sbjct: 65 E----DTPSWTELSSTQIIEMLENQGYT----AKHMVITGGEPCMYDLTSLTQELEQHGY 116 Query: 113 EIAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF----- 166 +ET+GT D W+ VSPK + +KG KL V +S N I Sbjct: 117 RCQIETSGTYPILASDDTWVTVSPK----INMKG----KLPVLPVALSRANEIKHPVGTT 168 Query: 167 -DFERFSLQPMDGPFLEENTNLAISYCFQNPK-------------WRLSVQTHKFIGI 210 D E+ ++G L E+ +A+ Q P+ WRLS+QTHK++ I Sbjct: 169 KDIEQLDAL-LEGVELLEDVTIALQPISQKPRATELCIETCIKRNWRLSIQTHKYLAI 225 >gi|152971643|ref|YP_001336752.1| coenzyme PQQ synthesis protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262041519|ref|ZP_06014716.1| radical SAM domain protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330012239|ref|ZP_08307334.1| radical SAM domain protein [Klebsiella sp. MS 92-3] gi|150956492|gb|ABR78522.1| putative coenzyme PQQ synthesis protein, nitrogenase iron-molybdenum domain [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259041080|gb|EEW42154.1| radical SAM domain protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328533879|gb|EGF60548.1| radical SAM domain protein [Klebsiella sp. MS 92-3] Length = 225 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 102/243 (41%), Gaps = 59/243 (24%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------- 53 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 5 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 53 Query: 54 ---FVGIQGTK-----GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 F + TK G + D LA + + W R+ V+TGGEP + PL Sbjct: 54 VSLFSILAKTKESDKWGPASSEDLLAIIGRQGWT-----ARHVVITGGEPCIHDLTPLTS 108 Query: 106 ALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQEL---------KLVFPQ 155 L + GF +ET+GT E + W+ VSPK + ++GG ++ ++ P Sbjct: 109 LLEQNGFSCQIETSGTHEVRCSPNTWVTVSPK----VNMRGGYDVLSQALQRADEIKHPV 164 Query: 156 VNVSPENYIGFDFERFS--------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207 V + E S LQP+ E+ T L I C WRLS+QTHK+ Sbjct: 165 GRVRDIEALDELLETLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKY 221 Query: 208 IGI 210 + I Sbjct: 222 LNI 224 >gi|288933817|ref|YP_003437876.1| radical SAM protein [Klebsiella variicola At-22] gi|290511103|ref|ZP_06550472.1| queuosine biosynthesis protein QueE [Klebsiella sp. 1_1_55] gi|288888546|gb|ADC56864.1| Radical SAM domain protein [Klebsiella variicola At-22] gi|289776096|gb|EFD84095.1| queuosine biosynthesis protein QueE [Klebsiella sp. 1_1_55] Length = 223 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 102/243 (41%), Gaps = 59/243 (24%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------- 53 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51 Query: 54 ---FVGIQGTK-----GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 F + TK G + D LA + + W R+ V+TGGEP + PL Sbjct: 52 VSLFSILAKTKESDKWGPASSEDLLAIIGRQGWT-----ARHVVITGGEPCIHDLTPLTS 106 Query: 106 ALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQEL---------KLVFPQ 155 L + GF +ET+GT E + W+ VSPK + ++GG ++ ++ P Sbjct: 107 LLEQNGFSCQIETSGTHEVRCSHNTWVTVSPK----VNMRGGYDVLSQALQRADEIKHPV 162 Query: 156 VNVSPENYIGFDFERFS--------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207 V + E S LQP+ E+ T L I C WRLS+QTHK+ Sbjct: 163 GRVRDIEALDELLETLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKY 219 Query: 208 IGI 210 + I Sbjct: 220 LNI 222 >gi|295097341|emb|CBK86431.1| Organic radical activating enzymes [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 223 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 102/239 (42%), Gaps = 51/239 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------- 53 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51 Query: 54 ---FVGIQGTK-----GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 F + TK G D LA + + W R+ V+TGGEP + +PL + Sbjct: 52 VSLFSILAKTKESDKWGAGSAEDLLAIISRQGWT-----ARHVVITGGEPCIHDLMPLTE 106 Query: 106 ALNKRGFEIAVETNGTIEPP-QGIDWICVSPKA----GCDL---KIKGGQELKLVFPQVN 157 L K G+ +ET+GT E W+ VSPK G D+ ++ E+K +V Sbjct: 107 LLEKNGYSCQIETSGTHEVRCSHSTWVTVSPKVNMRGGYDVLSQALERADEIKHPVGRVR 166 Query: 158 ---VSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E E+ +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 167 DIEALDELLATLTDEKQRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|27366011|ref|NP_761539.1| Queuosine Biosynthesis QueE Radical SAM [Vibrio vulnificus CMCP6] gi|37679724|ref|NP_934333.1| organic radical activating enzyme [Vibrio vulnificus YJ016] gi|320156525|ref|YP_004188904.1| queuosine Biosynthesis QueE Radical SAM [Vibrio vulnificus MO6-24/O] gi|27362211|gb|AAO11066.1| Queuosine Biosynthesis QueE Radical SAM [Vibrio vulnificus CMCP6] gi|37198469|dbj|BAC94304.1| organic radical activating enzyme [Vibrio vulnificus YJ016] gi|319931837|gb|ADV86701.1| queuosine Biosynthesis QueE Radical SAM [Vibrio vulnificus MO6-24/O] Length = 224 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 37/235 (15%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL----------WSGREQDRLSAQCRFC 50 M LY + E+F T+QGEG G AVF R C + W EQD S Sbjct: 1 MTLYKVNEMFETIQGEGVFTGVPAVFVRLQICPVGCSWCDTKQTWEAAEQDEQS------ 54 Query: 51 DTDFVGIQGTKGGRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 F I G Q A I EQ+ ++ V+TGGEP L L QA Sbjct: 55 ---FAEIIVKTGDSPTWCQADAAAIVEQYQRQGYSAKHIVITGGEPCLYDLTELTQAFEA 111 Query: 110 RGFEIAVETNGTIEPPQGID-WICVSPKAG-------CDLKIKGGQELKL-VFPQVNVSP 160 G + +ET+GT E + W+ VSPK D ++ E+K V Q ++ Sbjct: 112 IGCQCQIETSGTYEVKASENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVGTQKDIDQ 171 Query: 161 ENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + +LQP+ E T L I C + WRLS+QTHK++ I Sbjct: 172 LDALLLRAQVPATTVIALQPISQK--ERATQLCIDTCIKR-NWRLSIQTHKYLSI 223 >gi|313668991|ref|YP_004049275.1| hypothetical protein NLA_17110 [Neisseria lactamica ST-640] gi|313006453|emb|CBN87916.1| conserved hypothetical protein [Neisseria lactamica 020-06] Length = 212 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 103/227 (45%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 54 TFGMMSLSDILGR---LKTYTVRNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I+ E+++ V+ + + F + ER Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDVLAFCENMERKIRAR 164 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P +G +T I P W+LSVQTHK+ GI Sbjct: 165 HYYLSPCEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211 >gi|225010558|ref|ZP_03701029.1| conserved hypothetical protein [Flavobacteria bacterium MS024-3C] gi|225005387|gb|EEG43338.1| conserved hypothetical protein [Flavobacteria bacterium MS024-3C] Length = 209 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 36/216 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F T+QGEG H G A F R GC++ C +CD + Sbjct: 18 LMEAFYTIQGEGYHKGTAAYFIRVGGCDV-----------GCHWCDVK---------ESW 57 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 + ++ E+ I + V+TGGEPL P+ L K G + +ET+G Sbjct: 58 DAERHPPTAIEKIIQDASPYKTIVITGGEPLTWDMGPVTAGLKKVGLQTHIETSGAYTLT 117 Query: 126 QGIDWICVSPKA-----------GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174 DWIC+SPK +LK+ + L F Q + +G + + LQ Sbjct: 118 GEWDWICLSPKKNKLPLAPIYKEAHELKVIVFNKHDLEFAQEQAA---QVGPNCHLY-LQ 173 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P + ++ + + + NP W++S+QTHK++ I Sbjct: 174 P-EWSVKDKVVPMIVDFVMANPAWKVSLQTHKYLNI 208 >gi|238896239|ref|YP_002920975.1| putative coenzyme PQQ synthesis protein [Klebsiella pneumoniae NTUH-K2044] gi|238548557|dbj|BAH64908.1| putative coenzyme PQQ synthesis protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 223 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 102/243 (41%), Gaps = 59/243 (24%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------- 53 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51 Query: 54 ---FVGIQGTK-----GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 F + TK G + D LA + + W R+ V+TGGEP + PL Sbjct: 52 VSLFSILAKTKESDKWGPASSEDLLAIIGRQGWT-----ARHVVITGGEPCIHDLTPLTS 106 Query: 106 ALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQEL---------KLVFPQ 155 L + GF +ET+GT E + W+ VSPK + ++GG ++ ++ P Sbjct: 107 LLEQNGFSCQIETSGTHEVRCSPNTWVTVSPK----VNMRGGYDVLSQALQRADEIKHPV 162 Query: 156 VNVSPENYIGFDFERFS--------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207 V + E S LQP+ E+ T L I C WRLS+QTHK+ Sbjct: 163 GRVRDIEALDELLETLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKY 219 Query: 208 IGI 210 + I Sbjct: 220 LNI 222 >gi|291618623|ref|YP_003521365.1| YgcF [Pantoea ananatis LMG 20103] gi|291153653|gb|ADD78237.1| YgcF [Pantoea ananatis LMG 20103] Length = 223 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 103/231 (44%), Gaps = 35/231 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I E+F TLQGEG + G A+F R GC + W ++ DR + D Sbjct: 3 YPINEMFQTLQGEGYYTGVPAIFIRLQGCPVGCSWCDTKHTWE-KQADR---ETSLGDIL 58 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 ++ G + L I +Q T R+ V+TGGEP + PL +L GF+ Sbjct: 59 VKTVESDAWGNADTATLLSSIAQQGWTA----RHAVITGGEPAIYDLRPLTASLEAAGFQ 114 Query: 114 IAVETNGTIEPP-QGIDWICVSPKA----GCDL---KIKGGQELKL-VFPQVNVSPENYI 164 +ET+GT E W+ VSPK G D+ + E+K V Q +V + + Sbjct: 115 CQIETSGTHEIHCSEQTWVTVSPKVNMRGGYDVLAQALSRADEIKHPVARQRDVEALDDL 174 Query: 165 GFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + +LQP+ +E T L I C WRLS+QTHK++ I Sbjct: 175 LAGIQDSKARIIALQPISRK--DEATKLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|206580457|ref|YP_002236871.1| radical SAM domain protein [Klebsiella pneumoniae 342] gi|206569515|gb|ACI11291.1| radical SAM domain protein [Klebsiella pneumoniae 342] Length = 223 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 102/243 (41%), Gaps = 59/243 (24%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------- 53 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51 Query: 54 ---FVGIQGTK-----GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 F + TK G + D LA + + W R+ V+TGGEP + PL Sbjct: 52 VSLFSILAKTKESDKWGPASSEDLLAIIGRQGWT-----ARHVVITGGEPCIHDLTPLTS 106 Query: 106 ALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQEL---------KLVFPQ 155 L + GF +ET+GT E + W+ VSPK + ++GG ++ ++ P Sbjct: 107 LLEQNGFSCQIETSGTHEVCCSHNTWVTVSPK----VNMRGGYDVLSQALQRADEIKHPV 162 Query: 156 VNVSPENYIGFDFERFS--------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207 V + E S LQP+ E+ T L I C WRLS+QTHK+ Sbjct: 163 GRVRDIEALDELLETLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKY 219 Query: 208 IGI 210 + I Sbjct: 220 LNI 222 >gi|293392806|ref|ZP_06637124.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Serratia odorifera DSM 4582] gi|291424665|gb|EFE97876.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Serratia odorifera DSM 4582] Length = 223 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 108/233 (46%), Gaps = 39/233 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60 Y I E+F TLQGEG G A+F R GC + W + R D + ++ Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCSWCDTKHTWEKEANREVDMQRILVKTE 62 Query: 61 KG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G +QL ++++ Q T R+ V+TGGEP + +PL + G+ +E Sbjct: 63 ESDAWGSATAEQLLEVVQRQGYT----ARHIVITGGEPCIYDLIPLTKLFELNGYACQIE 118 Query: 118 TNGTIE---PPQGIDWICVSPKAGCDLKIKGGQEL---------KLVFP---QVNVSPEN 162 T+GT E P W+ VSPK + ++GG ++ ++ P Q ++ + Sbjct: 119 TSGTHEILCTPS--TWVTVSPK----VNMRGGMKVLEQALMRADEIKHPVGRQRDIEALD 172 Query: 163 YI--GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + E+ +LQP+ +E T L I C WRLS+QTHK++ I Sbjct: 173 ALLDTLNDEKRRIIALQPISQK--DEATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|254804413|ref|YP_003082634.1| hypothetical protein NMO_0411 [Neisseria meningitidis alpha14] gi|254667955|emb|CBA04204.1| conserved hypothetical protein [Neisseria meningitidis alpha14] Length = 212 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 102/227 (44%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 54 TFGMMSLSDILG---CLKTYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I+ E+++ V+ + + F + ER Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDVVAFCENMERKIRAH 164 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P +G +T I P W+LSVQTHK+ GI Sbjct: 165 HYYLSPCEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211 >gi|327395003|dbj|BAK12425.1| organic radical Activating YgcF [Pantoea ananatis AJ13355] Length = 223 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 103/231 (44%), Gaps = 35/231 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I E+F TLQGEG + G A+F R GC + W ++ DR + D Sbjct: 3 YPINEMFQTLQGEGYYTGVPAIFIRLQGCPVGCSWCDTKHTWE-KQADR---ETSLGDIL 58 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 ++ G + L I +Q T R+ V+TGGEP + PL +L GF+ Sbjct: 59 VKTVESDAWGNADTATLLSSIAQQGWTA----RHVVITGGEPAIYDLRPLTASLEAAGFQ 114 Query: 114 IAVETNGTIEPP-QGIDWICVSPKA----GCDL---KIKGGQELKL-VFPQVNVSPENYI 164 +ET+GT E W+ VSPK G D+ + E+K V Q +V + + Sbjct: 115 CQIETSGTHEIHCSEQTWVTVSPKVNMRGGYDVLAQALSRADEIKHPVARQRDVEALDDL 174 Query: 165 GFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + +LQP+ +E T L I C WRLS+QTHK++ I Sbjct: 175 LAGIQDSKARIIALQPISRK--DEATKLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|188534838|ref|YP_001908635.1| hypothetical protein ETA_27180 [Erwinia tasmaniensis Et1/99] gi|188029880|emb|CAO97764.1| Conserved hypothetical protein [Erwinia tasmaniensis Et1/99] Length = 223 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 102/227 (44%), Gaps = 27/227 (11%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLS-AQCRFCDTDFVGI 57 Y I E+F TLQGEG + G A+F R GC + W + D+L+ + D + Sbjct: 3 YPINEMFQTLQGEGVYTGVPAIFIRLQGCPVGCSWCDTKHTWDKLANRETSLGDILLKTV 62 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G + L + I T ++ V+TGGEP + VPL AL GF +E Sbjct: 63 ETDAWGAADAPALLETIRRHGWTA----KHIVVTGGEPCIHDLVPLTAALQDAGFSCQIE 118 Query: 118 TNGTIEPP-QGIDWICVSPKA----GCDL----KIKGGQELKLVFPQVNVSP-ENYIGFD 167 T+GT E W+ VSPK G D+ ++ + V Q +V + +G Sbjct: 119 TSGTHEVSCTAQTWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQRDVEALDELLGTL 178 Query: 168 FER----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + +LQP+ + T L I C WRLS+QTHK++ I Sbjct: 179 NDNKARIIALQPISQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222 >gi|212711380|ref|ZP_03319508.1| hypothetical protein PROVALCAL_02452 [Providencia alcalifaciens DSM 30120] gi|212686109|gb|EEB45637.1| hypothetical protein PROVALCAL_02452 [Providencia alcalifaciens DSM 30120] Length = 223 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 100/230 (43%), Gaps = 31/230 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60 Y I EIF TLQGEG G AVF R GC + W +Q + + ++ Sbjct: 3 YPINEIFQTLQGEGVFTGVPAVFIRLQGCPVGCSWCDTKQTWDKEPAKESTLGDIALKTQ 62 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + + LI+ G ++ V+TGGEP + L Q L GF+ +ET+G Sbjct: 63 DSDFWAMSDAESLIQLMLQNG-YTAKHIVITGGEPCIYDLTALTQTLEANGFQCQIETSG 121 Query: 121 TIEPPQGID--WICVSPKAGCDLKIKGG-QELKLVFPQVN-----VSPENYI-GFD---- 167 T P + W+ VSPK G +KGG Q L+ + N V+ E I D Sbjct: 122 TY-PILCTENTWVTVSPKVG----MKGGLQVLEQAINRANEIKHPVAREKDIEALDQLLS 176 Query: 168 ------FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +LQP+ T L I C Q WRLS+QTHK++ I+ Sbjct: 177 LRTQGQLPIVALQPISQK--TSATKLCIDTCIQR-NWRLSIQTHKYLNIQ 223 >gi|309379630|emb|CBX21801.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 212 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 54 TFGMMSLSDILGR---LKTYTVRNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLK 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I E+++ V+ + + F + ER Sbjct: 111 PAPPQIDYVATSPKAYYAAKYETNCIAEADEVRI------VADGDVLAFCENMERKIRAR 164 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P +G +T I P W+LSVQTHK+ GI Sbjct: 165 HYYLSPCEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211 >gi|323474845|gb|ADX85451.1| organic radical activating enzyme, NrdG [Sulfolobus islandicus REY15A] Length = 208 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 76/154 (49%), Gaps = 30/154 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + EIF ++QGEG G + F R + CNL +C +CDT + GT+ Sbjct: 3 YRVIEIFTSVQGEGEVIGTPSNFIRLATCNL-----------RCVWCDTKYSWEIGTE-- 49 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 +D++ I+ K+ R +TGGEPLLQ VPL + L G +I +ETNGTI+ Sbjct: 50 -MTIDEIIAKID-------KKIRTTTITGGEPLLQNVVPLAKELKSIGHKIVIETNGTIK 101 Query: 124 PPQG----IDWICVSPKAGCDLKIKGGQELKLVF 153 P + ID VSPK G +LK F Sbjct: 102 PSEELRKIIDVFSVSPKLS-----NSGHKLKYDF 130 >gi|238897449|ref|YP_002923126.1| hypothetical protein HDEF_0210 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465204|gb|ACQ66978.1| conserved hypothetical protein, Radical_SAM domain protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 223 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 106/242 (43%), Gaps = 55/242 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 LY I EIF TLQGEG G A+F R GC C +CDT K Sbjct: 2 LYPINEIFQTLQGEGHFMGTPAIFIRLQGC-----------PVGCSWCDTKHT---WEKK 47 Query: 63 GRYNVDQLADLIEEQ----WI-TGEK-----------EGRYCVLTGGEPLLQVDVPLIQA 106 VD + L ++ W +GE+ + + V+TGGEP L PL Q Sbjct: 48 NEQQVDLFSILQKKTANDFWSHSGEQNLLAVIRAQGYQASHVVITGGEPCLYDLTPLTQL 107 Query: 107 LNKRGFEIAVETNGT-IEPPQGIDWICVSPKAGCDLKIKGG-----------QELKLVFP 154 L + G+ +ET+GT + W+ VSPK + ++GG ELK V Sbjct: 108 LEQEGYFCQIETSGTHLVHCTPSCWVTVSPK----INMRGGFKIQHQALERADELKHVVA 163 Query: 155 QVN--VSPENYIGFDFER----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + + + + IG +R SLQP+ + T L I C + WRLSVQ HK++ Sbjct: 164 RKSDIETLDALIGNLKDRKKRIISLQPVSQK--KSATQLCIDTCIER-NWRLSVQMHKYL 220 Query: 209 GI 210 GI Sbjct: 221 GI 222 >gi|311278265|ref|YP_003940496.1| Radical SAM domain-containing protein [Enterobacter cloacae SCF1] gi|308747460|gb|ADO47212.1| Radical SAM domain protein [Enterobacter cloacae SCF1] Length = 223 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 99/243 (40%), Gaps = 59/243 (24%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------- 53 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDMLEDRE 51 Query: 54 ---FVGIQGTK-----GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 F + TK G D L + + W R+ V+TGGEP + PL Sbjct: 52 VSLFSILAKTKESDKWGAATAEDLLTAITRQGWT-----ARHVVITGGEPCIHDLTPLTA 106 Query: 106 ALNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQEL---------KLVFPQ 155 L + G+ +ET+GT E W+ VSPK + ++GG E+ ++ P Sbjct: 107 LLEQNGYSCQIETSGTHEVRCSHSTWVTVSPK----VNMRGGFEVLSQALHRADEIKHPV 162 Query: 156 VNVSPENYIGFDFERFS--------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207 V + E S LQP+ ++ T L I C WRLS+QTHK+ Sbjct: 163 GRVRDIEALDELLETLSDDKQRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKY 219 Query: 208 IGI 210 + I Sbjct: 220 LNI 222 >gi|257386657|ref|YP_003176430.1| radical SAM protein [Halomicrobium mukohataei DSM 12286] gi|257168964|gb|ACV46723.1| Radical SAM domain protein [Halomicrobium mukohataei DSM 12286] Length = 258 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 19/132 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F +LQGEG AG +VF R SGCNL +C FCD+ + + Sbjct: 24 INELFHSLQGEGKLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPSHAW-L 71 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 +D++ IE + + V+TGGEPL+ + V L++ L++RG+ VETNGT+ Sbjct: 72 TIDEIVAEIEGY------DADHVVVTGGEPLIHEETVDLLERLDERGYHTTVETNGTVAV 125 Query: 125 PQGIDWICVSPK 136 ID VSPK Sbjct: 126 DAPIDLASVSPK 137 >gi|317968277|ref|ZP_07969667.1| organic radical activating protein [Synechococcus sp. CB0205] Length = 209 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 97/219 (44%), Gaps = 36/219 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F +LQGEG HAGR A F R GC + C +CDT + Sbjct: 14 VVETFHSLQGEGLHAGRSAFFIRLGGCRV-----------GCSWCDTK----HSWPAEVH 58 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTIEP 124 L +L + VLTGGEPL L A+ + I +ET+G ++P Sbjct: 59 PQQSLEELALACAEAASAGAAFVVLTGGEPLHHNLDALSAAIRQHCSLPIHLETSG-VDP 117 Query: 125 PQGI-DWICVSPKAG----------CD-LKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 G DWI +SPK CD LK+ + L+F +V+ S + Sbjct: 118 LTGSPDWISLSPKRHQPPRAELLQRCDELKVVVHEAADLLFAEVSASQAPQA-----TWL 172 Query: 173 LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 LQP G E LA+ + P+WRLS+Q+HK++G+R Sbjct: 173 LQP--GWDCREGQALALEFVQSQPRWRLSLQSHKWLGVR 209 >gi|227356608|ref|ZP_03840995.1| radical SAM domain protein [Proteus mirabilis ATCC 29906] gi|227163364|gb|EEI48291.1| radical SAM domain protein [Proteus mirabilis ATCC 29906] Length = 250 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 101/235 (42%), Gaps = 43/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I E+F TLQGEG G A+F R GC + W E ++ D Sbjct: 30 YPINEVFQTLQGEGVFTGVPALFVRLQGCPVGCSWCDTKHTWEKEESKKVP----LGDIP 85 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + G V+ + L +Q ++ V+TGGEP L PL + L K GF+ Sbjct: 86 IKTQESDTWGIATVEDILSLFRQQ----RYSAKHVVITGGEPCLYDLRPLTEGLEKAGFD 141 Query: 114 IAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVN--------VSPENYI 164 +ET+GT + W+ +SPK G ++GG L ++ +N V+ E I Sbjct: 142 CQIETSGTHDILCSEATWVTLSPKVG----MRGG--LNVLSSAINRANEIKHPVAREKDI 195 Query: 165 GF--DFERF-SLQPMDGPFL------EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 D R + QPM L E T L I C + WR S+QTHK++ I Sbjct: 196 EALDDLLRLRTQQPMAIVALQPISCKESATALCIKTCIER-NWRFSMQTHKYLNI 249 >gi|33241303|ref|NP_876245.1| putative organic radical activating protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238833|gb|AAQ00898.1| Radical activating enzyme [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 225 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 101/236 (42%), Gaps = 49/236 (20%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E F +LQGEG H G+ A F R GC + C +CDT + + Sbjct: 7 IVERFHSLQGEGLHFGKSAFFIRLGGCKV-----------GCPWCDTK----ESWSIATH 51 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-------NKRGFEIAVET 118 + +L +E I + V+TGGEPL L + + ++ I +ET Sbjct: 52 QEATVEELSKEAAIAQSQGAAILVITGGEPLHHNLNALCKTIQDFTSHNSRETMPIHLET 111 Query: 119 NGTIEPPQGIDWICVSPKA----------GCD-LKIKGGQELKLVFPQ------------ 155 +G E I+WI +SPK CD +K+ Q+ L+F + Sbjct: 112 SGVDEITGLINWITLSPKRHALPKKSLLRACDEIKVVIHQKEDLLFAEEMANQSIKERQI 171 Query: 156 -VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 S EN+ LQP G +E T L I Y +P+WRLS+QTHK++G+ Sbjct: 172 SKKTSDENH-KISQPHLFLQP--GWNSKEGTQLTIEYIKSHPQWRLSLQTHKWLGV 224 >gi|290476591|ref|YP_003469496.1| putative coenzyme PQQ synthesis protein with nitrogenase iron-molybdenum domain [Xenorhabdus bovienii SS-2004] gi|289175929|emb|CBJ82732.1| putative coenzyme PQQ synthesis protein with nitrogenase iron-molybdenum domain [Xenorhabdus bovienii SS-2004] Length = 223 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 105/247 (42%), Gaps = 65/247 (26%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD--------- 53 +Y I EIF TLQGEG G +VF R GC + C +CDT Sbjct: 2 IYPINEIFQTLQGEGVFTGVPSVFIRLQGCPV-----------GCSWCDTKHTWEKEADK 50 Query: 54 -------FVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 V Q + G Q+ +L Q T R+ V+TGGEP L PL + Sbjct: 51 QQPMENILVKSQDSDTWGAATARQIINLFIRQGYT----ARHIVVTGGEPCLYNLRPLTE 106 Query: 106 ALNKRGFEIAVETNGT--IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-VNVSPEN 162 L G++ +ET+GT I+ + W+ VSPK +K++GG + V P+ +N + E Sbjct: 107 TLESEGYQCQIETSGTHAIQCSEKT-WVTVSPK----VKMRGGYQ---VLPEAMNRANEI 158 Query: 163 YIGFDFER-------------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQ 203 ER +LQP+ EE T L I C WR S+Q Sbjct: 159 KHPVGRERDIEALDELLTMLDEKADPVIALQPISQK--EEATRLCIETCIAR-NWRFSMQ 215 Query: 204 THKFIGI 210 THK++ I Sbjct: 216 THKYLNI 222 >gi|197286098|ref|YP_002151970.1| hypothetical protein PMI2252 [Proteus mirabilis HI4320] gi|194683585|emb|CAR44467.1| conserved hypothetical protein [Proteus mirabilis HI4320] Length = 223 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 101/235 (42%), Gaps = 43/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I E+F TLQGEG G A+F R GC + W E ++ D Sbjct: 3 YPINEVFQTLQGEGVFTGVPALFVRLQGCPVGCSWCDTKHTWEKEESKKVP----LGDIP 58 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + G V+ + L +Q ++ V+TGGEP L PL + L K GF+ Sbjct: 59 IKTQESDTWGIATVEDILSLFRQQ----RYSAKHVVITGGEPCLYDLRPLTEGLEKAGFD 114 Query: 114 IAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVN--------VSPENYI 164 +ET+GT + W+ +SPK G ++GG L ++ +N V+ E I Sbjct: 115 CQIETSGTHDILCSEATWVTLSPKVG----MRGG--LSVLSSAINRANEIKHPVAREKDI 168 Query: 165 GF--DFERF-SLQPMDGPFL------EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 D R + QPM L E T L I C + WR S+QTHK++ I Sbjct: 169 EALDDLLRLRTQQPMAIVALQPISCKESATALCIKTCIER-NWRFSMQTHKYLNI 222 >gi|163786121|ref|ZP_02180569.1| hypothetical protein FBALC1_13087 [Flavobacteriales bacterium ALC-1] gi|159877981|gb|EDP72037.1| hypothetical protein FBALC1_13087 [Flavobacteriales bacterium ALC-1] Length = 210 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 90/221 (40%), Gaps = 39/221 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 L + E F T+QGEG H G A F R GC++ C +CD + Sbjct: 15 LLPLMEEFYTIQGEGYHKGTAAYFVRIGGCDV-----------GCHWCDVKESWLPELHP 63 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + I K V+TGGEPL PL + L +G + +ET+G Sbjct: 64 ATETTKIVENAI--------KYSDIIVVTGGEPLTWDMGPLTEQLKAKGVQTHIETSGAY 115 Query: 123 EPPQGIDWICVSPKA-----------GCDLK--IKGGQELKLVFPQVNVSPENYIGFDFE 169 + DWIC+SPK +LK I + K Q ++ I + Sbjct: 116 KLTGQWDWICLSPKKVKLPTEEIYDEAHELKCIIYNKDDFKFAEEQAAKINKDCILYLQP 175 Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +S + P + + Y NPKW++S+QTHK++ I Sbjct: 176 EWSKRDKMMPQI-------VDYVMANPKWKVSLQTHKYLNI 209 >gi|91793369|ref|YP_563020.1| radical activating enzyme [Shewanella denitrificans OS217] gi|91715371|gb|ABE55297.1| radical activating enzyme [Shewanella denitrificans OS217] Length = 222 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 102/228 (44%), Gaps = 30/228 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQD-RLSAQCRFCDTDFVGIQG 59 Y + E+F T+QGEG G A+F R GC + W +Q + A + + + G Sbjct: 3 YPVNEVFETIQGEGCFTGVPALFVRLQGCPVGCAWCDTKQTWDVLADNKVTPEQVITVDG 62 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 T G N D A LI G ++ VLTGGEP L + G+ + +ET+ Sbjct: 63 TIGRWANHDG-ASLITAFKAKGFT-AKHIVLTGGEPCLYDLTDITHDFIAAGYSVQIETS 120 Query: 120 GTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENY--------- 163 GT E D W+ VSPK + +KGG + L+ + N ++ +N+ Sbjct: 121 GTFEVKCHQDVWVTVSPK----INMKGGYKVLEQALIRANEIKHPIATQNHIDELDELLA 176 Query: 164 -IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 I + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 177 DIDLSGKTICLQPISQKV--RATELAMKTCIAR-NWRLSIQTHKYLNI 221 >gi|294141101|ref|YP_003557079.1| radical activating enzyme [Shewanella violacea DSS12] gi|293327570|dbj|BAJ02301.1| radical activating enzyme [Shewanella violacea DSS12] Length = 222 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 102/230 (44%), Gaps = 34/230 (14%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y + E+F T+QGEG G A+F R GC + W E++R++ + Sbjct: 3 YPVNEVFETIQGEGFFTGVPAIFVRLQGCPVGCSWCDTKHTWDVLEKNRVAPEL------ 56 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + + G + GR++ + A+ + +I + V+TGGEP + L LN +G+ Sbjct: 57 VIQVDG-EIGRWS-ELTAEALINSFIRKGFSANHVVITGGEPCIHDLTELTSQLNSQGYA 114 Query: 114 IAVETNGTIEPP-QGIDWICVSP----KAGCDLKIKGGQELKLVFPQVNVSPE------- 161 +ET+GT E W+ VSP KAG + + + + V S Sbjct: 115 TQIETSGTFEVICSDKTWVTVSPKVNMKAGMAVLTQALERADEIKHPVATSKHIDDLDEL 174 Query: 162 -NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 I D + LQP+ T LA+ C + WRLS+QTHK++ I Sbjct: 175 LEGIELDGKTICLQPISQK--PRATELAMKTCIER-NWRLSIQTHKYLNI 221 >gi|296122194|ref|YP_003629972.1| radical SAM protein [Planctomyces limnophilus DSM 3776] gi|296014534|gb|ADG67773.1| Radical SAM domain protein [Planctomyces limnophilus DSM 3776] Length = 260 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 67/132 (50%), Gaps = 19/132 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E FL++QGEG G + F R +GCNL +C FCDT + +G Sbjct: 23 IAETFLSVQGEGALTGVRSFFIRTTGCNL-----------RCWFCDTPYTSWTA-EGNWQ 70 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEP 124 +D+ L+ + +G + +LTGGEPLLQ V L AL G I VET GT++ Sbjct: 71 TIDE---LLAQATASG---AEHVILTGGEPLLQPAIVELSHALKAAGLHITVETAGTVDR 124 Query: 125 PQGIDWICVSPK 136 P D + +SPK Sbjct: 125 PVMADLMSISPK 136 >gi|33151750|ref|NP_873103.1| hypothetical protein HD0556 [Haemophilus ducreyi 35000HP] gi|33147971|gb|AAP95492.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 209 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 98/217 (45%), Gaps = 35/217 (16%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 EIF +LQGEG + G +F R CNL C +CDT++ Q ++ + Sbjct: 15 EIFESLQGEGFNTGLPCIFIRLGKCNL-----------ACPWCDTNYNEYQ-----KWTL 58 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQ 126 + + ++ + ++TGGEP L ++ L++ L G+ +A+ETNG P Sbjct: 59 EMILAKVKSY------TAKNIIITGGEPTLYANLTILLEQLKNAGYWLAIETNGLKAVPS 112 Query: 127 GIDWICVSPKAGCDLK-----IKGGQELKLV----FPQVNVSPENYIGFDFERFSLQPMD 177 ID+I SPK K + E+++V + E I S ++ Sbjct: 113 QIDYIATSPKKMYQEKYQREYLTQADEVRIVVDDDVTEFCALIEQKIQAHHYYLSPCEIE 172 Query: 178 GP--FLEENTNLA-ISYCFQNPKWRLSVQTHKFIGIR 211 G LE T L ++ PKW+LS+QTHK IGI Sbjct: 173 GKMNLLETITQLGQLNQRVNKPKWQLSIQTHKIIGIE 209 >gi|269102881|ref|ZP_06155578.1| queuosine Biosynthesis QueE Radical SAM [Photobacterium damselae subsp. damselae CIP 102761] gi|268162779|gb|EEZ41275.1| queuosine Biosynthesis QueE Radical SAM [Photobacterium damselae subsp. damselae CIP 102761] Length = 222 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 105/234 (44%), Gaps = 39/234 (16%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59 +Y + E+F T+QGEG G A+F R C + W +Q + F D + + Sbjct: 1 MYKLNEVFETIQGEGVFTGVPAIFVRLQICPVGCSWCDTKQTWSAEPQDFTTLDRIMAKT 60 Query: 60 TKGGRY---NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 + + + L+++Q T ++ V+TGGEP + PL QAL G++ + Sbjct: 61 GDSPLWTEIDAQGIVSLLQDQGYTA----KHVVITGGEPCIYDLRPLTQALEASGYQCQI 116 Query: 117 ETNGTIE-PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF------DFE 169 ET+GT E W+ VSPK + +KG KL + +S N I D + Sbjct: 117 ETSGTSEVQATEATWVTVSPK----INMKG----KLPVLEKALSRANEIKHPVGTQKDLD 168 Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNPK-------------WRLSVQTHKFIGI 210 + + ++G L + +A+ Q P+ WRLS+QTHK++ I Sbjct: 169 QLD-ELLNGVALRSDVTIALQPISQKPRATELCIETCIKRNWRLSIQTHKYLAI 221 >gi|262404009|ref|ZP_06080564.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. RC586] gi|262349041|gb|EEY98179.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. RC586] Length = 222 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 99/229 (43%), Gaps = 29/229 (12%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGI 57 +Y I E+F T+QGEG G AVF R GC + W +Q D L ++ TDF I Sbjct: 1 MYRINEMFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWDMLESE----QTDFSHI 56 Query: 58 QGTKGGRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 G Q A + +++ T E + ++ V+TGGEP + L Q G + + Sbjct: 57 LLKAGDSPTWCQASAQDVVQRYQTQEYQAKHIVITGGEPCIYDLTELTQVFEAIGCQCQI 116 Query: 117 ETNGTIEPPQGID-WICVSPKAGC-------DLKIKGGQELKLVFPQVNVSPENYIGFDF 168 ET+GT E + W+ VSPK D ++ E+K N EN Sbjct: 117 ETSGTYEILATPNTWVTVSPKVAMKGKLPILDSSLQRANEIKHPVATEN-DIENLDALLL 175 Query: 169 ER-------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ T L I C WRLS+QTHK++ I Sbjct: 176 RAKVSSATVIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 221 >gi|330445748|ref|ZP_08309400.1| conserved protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489939|dbj|GAA03897.1| conserved protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 222 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 102/233 (43%), Gaps = 37/233 (15%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL----------WSGREQDRLSAQCRFCDT 52 +Y I E+F T+QGEG G A+F R C + W+ QD S + T Sbjct: 1 MYKINEVFETIQGEGVFTGVPAIFVRLQVCPVGCSWCDTKQTWTAEPQDLASLEQIMAKT 60 Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF 112 + + T+ V QL LI++++ ++ V+TGGEP + PL +AL GF Sbjct: 61 EDSPL-WTQLDANGVVQL--LIDQKYT-----AKHVVITGGEPCIYDLRPLTEALEAAGF 112 Query: 113 EIAVETNGTIE-PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENYIGFDFER 170 +ET+GT E W+ VSPK K+ L + N + D E+ Sbjct: 113 NCQIETSGTSEIQASNNTWVTVSPKINMKAKLPV---LASALERANEIKHPVGTSKDIEQ 169 Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPK-------------WRLSVQTHKFIGI 210 ++G L+ + +A+ Q P+ WRLS+QTHK++ I Sbjct: 170 LDAL-LEGKNLKSDITIALQPISQKPRATELCIETCIARNWRLSIQTHKYLAI 221 >gi|292487226|ref|YP_003530098.1| hypothetical protein EAMY_0740 [Erwinia amylovora CFBP1430] gi|291552645|emb|CBA19690.1| Uncharacterized protein ygcF [Erwinia amylovora CFBP1430] Length = 255 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 100/227 (44%), Gaps = 27/227 (11%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLS-AQCRFCDTDFVGI 57 Y I E+F TLQGEG + G A+F R GC + W + D+L+ + D + Sbjct: 35 YPINEMFQTLQGEGVYTGVPAIFIRLQGCPVGCSWCDTKHTWDKLANRETSLGDILLKTV 94 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G + L + I T ++ V+TGGEP + PL AL GF +E Sbjct: 95 ESDAWGAADAPALLETIRRHGWT----AKHIVITGGEPCIHDLTPLTAALQGSGFSCQIE 150 Query: 118 TNGTIEPPQGID-WICVSPKA----GCDL----KIKGGQELKLVFPQVNVSPENYIGFDF 168 T+GT E + W+ VSPK G D+ ++ + V Q +V + + Sbjct: 151 TSGTHEVHCTAETWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQRDVDALDDLLATL 210 Query: 169 ER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ + T L I C WRLS+QTHK++ I Sbjct: 211 SDNKARIIALQPVSQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 254 >gi|292900399|ref|YP_003539768.1| hypothetical protein EAM_2701 [Erwinia amylovora ATCC 49946] gi|291200247|emb|CBJ47375.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946] Length = 223 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 101/231 (43%), Gaps = 35/231 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLS-AQCRFCDTDFVGI 57 Y I E+F TLQGEG + G A+F R GC + W + D+L+ + D + Sbjct: 3 YPINEMFQTLQGEGVYTGVPAIFIRLQGCPVGCSWCDTKHTWDKLANRETSLGDILLKTV 62 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G + L + I T ++ V+TGGEP + PL AL GF +E Sbjct: 63 ESDAWGAADAPALLETIRRHGWT----AKHIVITGGEPCIHDLTPLTAALQGSGFSCQIE 118 Query: 118 TNGTIEPPQGID-WICVSPKAGCDLKIKGGQEL------------KLVFPQVNVSPENYI 164 T+GT E + W+ VSPK + ++GG ++ V Q +V + + Sbjct: 119 TSGTHEVHCTAETWVTVSPK----VNMRGGYDVLNQALVRADEVKHPVARQRDVDALDDL 174 Query: 165 GFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ + T L I C WRLS+QTHK++ I Sbjct: 175 LATLSDNKARIIALQPVSQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222 >gi|127512989|ref|YP_001094186.1| radical SAM domain-containing protein [Shewanella loihica PV-4] gi|126638284|gb|ABO23927.1| Radical SAM domain protein [Shewanella loihica PV-4] Length = 222 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 66/236 (27%), Positives = 107/236 (45%), Gaps = 46/236 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y + E+F T+QGEG + G A+F R GC + W ++R+S++ Sbjct: 3 YPVNEVFETIQGEGVYTGVPAIFVRLQGCPVGCSWCDTKHTWETLAENRVSSE------Q 56 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + + G G +D +L+ + G ++ V+TGGEP + + L QA G + Sbjct: 57 VIQVDGAIGRWAELDA-RELLMHFKVQG-FSAKHVVITGGEPCIYDLIALTQAFADAGMQ 114 Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQEL---------KLVFPQVNVS-- 159 +ET+GT + P+ W+ VSPK + +KGG ++ ++ P S Sbjct: 115 CQIETSGTFDVLVDPRA--WVTVSPK----INMKGGYKVLEQALERADEIKHPVAKASHI 168 Query: 160 ---PENYIGFDF--ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E G D + LQP+ T LA+ C + WRLS+QTHK++ I Sbjct: 169 EELDELLKGIDTLGKTICLQPISQK--PRATELAMKVCIER-NWRLSIQTHKYLNI 221 >gi|300712358|ref|YP_003738172.1| Radical SAM domain protein [Halalkalicoccus jeotgali B3] gi|299126041|gb|ADJ16380.1| Radical SAM domain protein [Halalkalicoccus jeotgali B3] Length = 251 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 50/132 (37%), Positives = 67/132 (50%), Gaps = 19/132 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F +LQGEG AG + F R SGCNL +C FCD+ + G Sbjct: 19 INELFHSLQGEGKLAGVPSTFVRTSGCNL-----------RCWFCDSYHTSWE-PAGDWM 66 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEP 124 ++ + + IE+ + VLTGGEPLL L++ L +RG+ VETNGTI P Sbjct: 67 GMEAILEGIEDHG------ADHVVLTGGEPLLHDASSELLERLAERGYHTTVETNGTIVP 120 Query: 125 PQGIDWICVSPK 136 +D VSPK Sbjct: 121 DAPVDLASVSPK 132 >gi|330830002|ref|YP_004392954.1| Radical activating enzyme [Aeromonas veronii B565] gi|328805138|gb|AEB50337.1| Radical activating enzyme [Aeromonas veronii B565] Length = 230 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 99/245 (40%), Gaps = 63/245 (25%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54 Y I EIF T+QGEG G A+F R GC + C +CDT Sbjct: 10 YPINEIFQTIQGEGIFTGLPAIFVRLQGCPV-----------GCPWCDTRHTWVVDPARE 58 Query: 55 VGIQGTKGGRYNVDQLADLIEEQWIT--GE--KEGRYCVLTGGEPLLQVDVPLIQALNKR 110 VG D + L Q I GE + R+ V+TGGEP L L AL Sbjct: 59 VGKAAVLDRSNESDCWSQLSTAQIIKSFGELGYQARHVVITGGEPCLYDLHELSSALLAA 118 Query: 111 GFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIKGG----------------------- 146 G+++ +ET+GT E W+ VSPK G +KGG Sbjct: 119 GYQVQIETSGTSEIKTHEQTWVTVSPKIG----MKGGLPVLVSALERANEIKHPVATEHH 174 Query: 147 -QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205 +EL + + P+ I +LQP+ T LA+ C WRLS+QTH Sbjct: 175 IEELDTLLATATLRPDVVI-------ALQPISQK--PRATQLAMDTCIAR-NWRLSIQTH 224 Query: 206 KFIGI 210 K++ I Sbjct: 225 KYLDI 229 >gi|83593294|ref|YP_427046.1| radical SAM family protein [Rhodospirillum rubrum ATCC 11170] gi|83576208|gb|ABC22759.1| Radical SAM [Rhodospirillum rubrum ATCC 11170] Length = 235 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 24/120 (20%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I+E+F TLQGEG +G+ +VF R +GCNL +C +CDTDF + + Sbjct: 20 IQEVFYTLQGEGPFSGQPSVFVRTAGCNL-----------RCAWCDTDF----ESSAWKP 64 Query: 66 NVDQLADLIEEQWITGEKEGRYC---VLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + +L +I+ + R C VLTGGEPL Q PL++AL RG + +ETNGT+ Sbjct: 65 PLPELLAVIDS------RRPRVCDLVVLTGGEPLRQEVGPLVRALLARGLRVQIETNGTL 118 >gi|197337552|ref|YP_002158091.1| queuosine biosynthesis protein QueE [Vibrio fischeri MJ11] gi|197314804|gb|ACH64253.1| queuosine biosynthesis protein QueE [Vibrio fischeri MJ11] Length = 226 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 102/238 (42%), Gaps = 47/238 (19%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL----------WSGREQDRLSAQCRFCDT 52 L+ I E+F T+QGEG G ++F R GC + W D+ Q T Sbjct: 5 LFKINELFETIQGEGTFTGVPSIFLRLQGCPVGCSWCDTKQTWDVELSDKTDLQTILAKT 64 Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF 112 + + Q+ +++E Q T ++ V+TGGEP + L Q L + G+ Sbjct: 65 E----DTPSWTELSSTQIIEMLENQGYT----AKHMVITGGEPCMYDLTSLTQELEQHGY 116 Query: 113 EIAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF----- 166 +ET+GT + W+ VSPK + +KG KL V +S N I Sbjct: 117 RCQIETSGTYPILASENTWVTVSPK----INMKG----KLPVLPVALSRANEIKHPVGTT 168 Query: 167 -DFERFSLQPMDGPFLEENTNLAISYCFQNPK-------------WRLSVQTHKFIGI 210 D E+ ++G L E+ +A+ Q P+ WRLS+QTHK++ I Sbjct: 169 KDIEQLDAL-LEGVELLEDVTIALQPISQKPRATELCIETCIKRNWRLSIQTHKYLAI 225 >gi|325291195|ref|YP_004267376.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324966596|gb|ADY57375.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 203 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 98/223 (43%), Gaps = 40/223 (17%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 K Y + EIF ++QGEG G A F R CNL +C +CD+ G K Sbjct: 8 KEYPVHEIFDSIQGEGYWTGAAASFVRLQQCNL-----------RCAWCDSK--GTWEGK 54 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + D++ + + + +LTGGEPLL L+++L G ++ +ETNGT Sbjct: 55 PEKMTADEILAAVHSERV---------ILTGGEPLLHDLTALLESLKAAGKKVHIETNGT 105 Query: 122 IEP-----PQGIDWICVSPKAGCDLKIK-----GGQELKLVFPQVNVSPENYIGFDFE-- 169 +P PQ WI VSPK ++ E K V + + S + +F Sbjct: 106 -QPWKESYPQEA-WITVSPKKESGYLVQPSIKSKANEYKFVVDE-DFSADILAQLEFNSC 162 Query: 170 -RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 L P + E A+S Q P RL++Q HK IG+R Sbjct: 163 PNIFLSPEN--VRSEMIKKALSIVAQYPFCRLTLQLHKLIGVR 203 >gi|284009093|emb|CBA76077.1| conserved hypothetical protein [Arsenophonus nasoniae] Length = 224 Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 98/239 (41%), Gaps = 50/239 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I +IF T+QGEG G A+F R GC C +CDT + + Sbjct: 3 YPINQIFQTIQGEGYFTGVAAIFVRLQGC-----------PVGCSWCDTKHTWAKNKQQQ 51 Query: 64 RYNVDQLADLIE-EQWITGEKE------------GRYCVLTGGEPLLQVDVPLIQALNKR 110 R LA + E+W T E R+ V+TGGEP L L L K+ Sbjct: 52 RPLSIILAKKSDNEEWATCSSEQIIDLFEQNHYTARHIVITGGEPCLYDLTELTTNLEKK 111 Query: 111 GFEIAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQEL---------KLVFP---QVN 157 G++ +ET+GT W+ VSPK ++GG ++ ++ P Q + Sbjct: 112 GYQCQIETSGTHNIYCSEKTWVTVSPKVA----MRGGYKILPAALNRANEIKHPVGRQRD 167 Query: 158 VSPENYI------GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + Y+ LQP+ TNL I C + WRLSVQ HK++ I Sbjct: 168 IDALEYLINQLAPNHPAPHICLQPISQN--ANATNLCIETCIKR-NWRLSVQMHKYLDI 223 >gi|294635382|ref|ZP_06713876.1| radical SAM domain protein [Edwardsiella tarda ATCC 23685] gi|291091269|gb|EFE23830.1| radical SAM domain protein [Edwardsiella tarda ATCC 23685] Length = 249 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 105/240 (43%), Gaps = 53/240 (22%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G A+F R GC + C +CD+ Q Sbjct: 29 YPINEIFHSLQGEGFYTGLPAIFIRLQGCPV-----------GCSWCDSKHTWQQDAVR- 76 Query: 64 RYNVDQLADLIEEQ--WITGE------------KEGRYCVLTGGEPLLQVDVPLIQALNK 109 + ++Q+ + E W + + R+ V+TGGEP L +PL AL + Sbjct: 77 QVALEQVVEKAAESDAWASADVATLCALLQQRGYAARHVVITGGEPCLHDLLPLTLALEQ 136 Query: 110 RGFEIAVETNGTIEPPQGID--WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPE 161 G++ +ET+GT P + + W+ VSPK + ++GG L + N V+ E Sbjct: 137 AGYQCQIETSGT-HPVRCSEQTWVTVSPK----VAMRGGMAVLTSALRRANEIKHPVARE 191 Query: 162 NYIGFDF-----------ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 I + +LQP+ E T L I C WRLS+QTHK++ I Sbjct: 192 RDIAALDALLATLGEALPQVVALQPISCK--EGATRLCIDTCLAR-NWRLSMQTHKYLHI 248 >gi|194097763|ref|YP_002000804.1| hypothetical protein NGK_0179 [Neisseria gonorrhoeae NCCP11945] gi|239998266|ref|ZP_04718190.1| hypothetical protein Ngon3_02112 [Neisseria gonorrhoeae 35/02] gi|193933053|gb|ACF28877.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|317163547|gb|ADV07088.1| hypothetical protein NGTW08_0112 [Neisseria gonorrhoeae TCDC-NG08107] Length = 212 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 101/227 (44%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 54 TFGMMSLSDILG---CLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLK 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I E+++ V+ + + F + ER Sbjct: 111 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRI------VADGDVLAFCENMERKIRAR 164 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P +G +T I P W+LSVQTHK+ GI Sbjct: 165 HYYLSPCEQNGVMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211 >gi|21672674|ref|NP_660741.1| hypothetical protein BUsg401 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091592|sp|Q8K9D9|Y401_BUCAP RecName: Full=Uncharacterized protein BUsg_401 gi|21623312|gb|AAM67952.1| hypothetical 25.0 kDa protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 219 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 101/238 (42%), Gaps = 51/238 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF T+QGEG + G ++F R GC C++CDT + Sbjct: 3 YPINEIFQTIQGEGYYTGTPSIFIRLQGC-----------PVHCKWCDTKYTWKCN---- 47 Query: 64 RYNVDQLADLIEEQWITGEKEGR----------------------YCVLTGGEPLLQVDV 101 N DQ++ E+ I +K R + V+TGGEP L + Sbjct: 48 --NEDQIS---YEKIIMKKKSNRKWSYMNVKEIILIIKIKKWTAKHIVITGGEPCLYNLL 102 Query: 102 PLIQALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCD-LKIKGGQELKLVFPQVNVS 159 + + L K ++ +ET+GT ++ WI +SPK LK + ++ +P + Sbjct: 103 EITKELEKEDYKCQIETSGTELIKCSLNTWITLSPKINKKTLKTSILRSNEIKYPVLKKE 162 Query: 160 PENYIGFDFERFSLQPMDGPFL------EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 Y+ ++ + + FL EE N+ I C WRLSVQ HK++ IR Sbjct: 163 DLFYLNSILKKIKNKKHNLIFLQPISQNEEALNICIKTCIIK-NWRLSVQIHKYLKIR 219 >gi|268594121|ref|ZP_06128288.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268547510|gb|EEZ42928.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] Length = 240 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 101/227 (44%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 41 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 82 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 83 -FGMMSLSDILG---CLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLK 138 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170 P ID++ SPKA K I E+++ V+ + + F + ER Sbjct: 139 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRI------VADGDVLAFCENMERKIRAR 192 Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 + L P +G +T I P W+LSVQTHK+ GI Sbjct: 193 HYYLSPCEQNGVMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 239 >gi|104781624|ref|YP_608122.1| hypothetical protein PSEEN2518 [Pseudomonas entomophila L48] gi|95110611|emb|CAK15322.1| conserved hypothetical protein [Pseudomonas entomophila L48] Length = 229 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 70/142 (49%), Gaps = 22/142 (15%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 ++E+F TLQGEG ++G + F R SGCNL QC +CDT F + + + Sbjct: 19 VEEVFRTLQGEGPYSGVPSTFVRLSGCNL-----------QCYWCDTQFEAFRWSMTPQA 67 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI--E 123 V+ + L VLTGGEP Q PLIQ GF++ +ETNGTI Sbjct: 68 IVEMIRGL-------EAPVPELVVLTGGEPFRQSIAPLIQVFLDEGFKVQIETNGTIYQA 120 Query: 124 PPQGIDWICV-SPKAGC-DLKI 143 P G D V SPK DL++ Sbjct: 121 IPTGQDVTVVCSPKTPVLDLRM 142 >gi|220926065|ref|YP_002501367.1| radical SAM domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219950672|gb|ACL61064.1| Radical SAM domain protein [Methylobacterium nodulans ORS 2060] Length = 230 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 104/253 (41%), Gaps = 65/253 (25%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF------ 54 M ++++ EIF T QGE G +VF R GC + C FCDT Sbjct: 1 MTVFAVNEIFETFQGEAAFTGTPSVFVRLQGCPV-----------GCAFCDTKMTWHVRP 49 Query: 55 -----VGIQGTKG------GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103 VG K R + + LA L+ GE R+ V TGGEP L + Sbjct: 50 EHEIEVGAMIAKTEDAPTWARLHDEDLAMLV------GEFRARHVVFTGGEPALYDLTEV 103 Query: 104 IQALNKRGFEIAVETNGT----IEPPQGIDWICVSPKA---------------GCDLKIK 144 + L +G + +ET+GT I+P W+ VSPK ++K+ Sbjct: 104 SRRLIDQGRTVQLETSGTALIRIDPHA---WVTVSPKIDMPGGLKVLPAAVARANEIKMP 160 Query: 145 GGQELKLVFPQVNVSPENYIGFDFE------RFSLQPMDGPFLEENTNLAISYCFQNPKW 198 G+ + Q ++ +G + LQP+ E+ T L + N W Sbjct: 161 IGKPADIEKLQAFLAEHPAVGVAYTGSGPALLIWLQPLSQS--EKATALCMEAAAAN-GW 217 Query: 199 RLSVQTHKFIGIR 211 RLS+QTHKF+G+R Sbjct: 218 RLSLQTHKFVGVR 230 >gi|225025886|ref|ZP_03715078.1| hypothetical protein EUBHAL_00114 [Eubacterium hallii DSM 3353] gi|224956783|gb|EEG37992.1| hypothetical protein EUBHAL_00114 [Eubacterium hallii DSM 3353] Length = 221 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 18/123 (14%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y + E F+++ GEG AG++A F R GCNL C +CDT + + Sbjct: 1 MITYPVVEKFVSINGEGQKAGKIAAFIRMRGCNL-----------ACNYCDTSWANTKDC 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119 + ++L ++E I LTGGEPLL ++ PLI+AL GF + +ETN Sbjct: 50 PCEFLSAEELITWLKEHSIEN------VTLTGGEPLLTEEIAPLIEALGTAGFSVEIETN 103 Query: 120 GTI 122 G++ Sbjct: 104 GSV 106 >gi|32472078|ref|NP_865072.1| radical activating enzyme [Rhodopirellula baltica SH 1] gi|32397450|emb|CAD72756.1| conserved hypothetical protein-putative radical activating enzyme [Rhodopirellula baltica SH 1] Length = 257 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 19/132 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E F++ QGEG G +VF R SGCNL +C FCDT + + +G R Sbjct: 32 ISETFVSRQGEGELTGTESVFIRTSGCNL-----------RCWFCDTPYASWK-PEGTRQ 79 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 ++ L L+ + + ++ VLTGGEPL+ V LI L G + +ET GT++P Sbjct: 80 TIEDLLQLVAKSGV------KHVVLTGGEPLIAKGIVSLIDQLRSAGNHVTIETAGTVDP 133 Query: 125 PQGIDWICVSPK 136 D + +SPK Sbjct: 134 GARCDLLSLSPK 145 >gi|312171327|emb|CBX79586.1| Uncharacterized protein ygcF [Erwinia amylovora ATCC BAA-2158] Length = 223 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 101/231 (43%), Gaps = 35/231 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLS-AQCRFCDTDFVGI 57 Y I E+F TLQGEG + G A+F R GC + W + D+L+ + D + Sbjct: 3 YPINEMFQTLQGEGVYTGVPAIFIRLQGCPVGCSWCDTKHTWDKLANRETSLGDILLKTV 62 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G + L + I T ++ V+TGGEP + PL AL GF +E Sbjct: 63 ESDAWGAADAPALLETIRRHGWT----AKHIVITGGEPCIYDLTPLTAALQGSGFSCQIE 118 Query: 118 TNGTIEPPQGID-WICVSPKAGCDLKIKGGQEL------------KLVFPQVNVSPENYI 164 T+GT E + W+ VSPK + ++GG ++ V Q +V + + Sbjct: 119 TSGTHEVHCTAETWVTVSPK----VNMRGGYDVLNQALVRADEVKHPVARQRDVDALDDL 174 Query: 165 GFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ + T L I C WRLS+QTHK++ I Sbjct: 175 LATLSDNKARIIALQPVSQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222 >gi|114563049|ref|YP_750562.1| radical activating enzyme [Shewanella frigidimarina NCIMB 400] gi|114334342|gb|ABI71724.1| radical activating enzyme [Shewanella frigidimarina NCIMB 400] Length = 222 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 107/234 (45%), Gaps = 42/234 (17%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL----------WSGREQDRLSAQCRFCDTD 53 Y + E+F T+QGEG + G A+F R GC + W +++++A+ Sbjct: 3 YPVNEVFETIQGEGTYTGVPALFVRLQGCPVGCAWCDTKQTWDVLPENKVTAE------Q 56 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + + GT GR+ D + + + ++ VLTGGEP L L + G++ Sbjct: 57 VIQVDGTI-GRW-ADHTGYTLLQAFHDKGFTAKHIVLTGGEPCLYNLTELTTIFIEAGYQ 114 Query: 114 IAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENY--- 163 + +ET+GT + D W+ VSPK + +KGG + L+ + N ++ E++ Sbjct: 115 VQIETSGTFDVKCHSDVWVTVSPK----INMKGGYKVLEQALNRANEIKHPIATEHHIDE 170 Query: 164 -------IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 I + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 171 LDKLLLNIDVSDKTICLQPISQK--ARATELAMKVCISR-NWRLSIQTHKYLNI 221 >gi|238791241|ref|ZP_04634880.1| hypothetical protein yinte0001_29930 [Yersinia intermedia ATCC 29909] gi|238729374|gb|EEQ20889.1| hypothetical protein yinte0001_29930 [Yersinia intermedia ATCC 29909] Length = 216 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 99/229 (43%), Gaps = 41/229 (17%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGTKG--- 62 +F TLQGEG G A+F R GC + W + R D + ++ + Sbjct: 1 MFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKEADREVDMQRIMVKTAESDAW 60 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 G + QL D+ +Q T R+ V+TGGEP + PL L + G+ +ET+GT Sbjct: 61 GEASAQQLLDIFSQQGYTA----RHVVITGGEPAIYDLFPLTSLLEQAGYSCQIETSGTH 116 Query: 123 EPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY------------------ 163 + W+ VSPK + ++GG + V PQ + Sbjct: 117 DVRCSATTWVTVSPK----VNMRGGLK---VLPQALQRADEIKHPVGRMRDIEALEVLLA 169 Query: 164 -IGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + D +R +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 170 TLDDDKKRIIALQPISQK--DDATKLCIETCIAK-NWRLSMQTHKYLNI 215 >gi|163752023|ref|ZP_02159232.1| radical activating enzyme [Shewanella benthica KT99] gi|161328075|gb|EDP99244.1| radical activating enzyme [Shewanella benthica KT99] Length = 222 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 105/230 (45%), Gaps = 34/230 (14%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y + E+F T+QGEG G A+F R GC + W E++R++ + Sbjct: 3 YPVNEVFETIQGEGVFTGVAAIFVRLQGCPVGCSWCDTKHTWDVLEKNRVAPEL------ 56 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + + G G R++ +LI +I ++ V+TGGEP + L LN++G+ Sbjct: 57 VIQVDGVIG-RWSELTAEELIN-FFIRKGFNAKHVVITGGEPCIHDLTELTSQLNRQGYG 114 Query: 114 IAVETNGTIEPP-QGIDWICVSP----KAGCDL---KIKGGQELKLVFP---QVNVSPEN 162 +ET+GT E W+ VSP KAG + ++ E+K ++ E Sbjct: 115 TQIETSGTFEVTCSDKTWVTVSPKVNMKAGMTVLTQALERADEIKHPVARSKHIDDLDEL 174 Query: 163 YIGFDFE--RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 G + E LQP+ T LA+ C + WRLS+QTHK++ I Sbjct: 175 LEGIEVEGKIICLQPISQK--PRATELAMKICIER-NWRLSIQTHKYLNI 221 >gi|15897539|ref|NP_342144.1| hypothetical protein SSO0624 [Sulfolobus solfataricus P2] gi|13813792|gb|AAK40934.1| Conserved hypothetical protein [Sulfolobus solfataricus P2] Length = 211 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 74/154 (48%), Gaps = 30/154 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + EIF ++QGEG G + F R + CNL +C +CDT + GT+ Sbjct: 6 YRVIEIFTSIQGEGEVIGIPSNFIRLATCNL-----------RCVWCDTKYSWEIGTEMS 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 I+E +K+ + +TGGEPLLQ +PL + L G +I VETNGTI+ Sbjct: 55 ----------IDEIIAKLDKKIKTTTITGGEPLLQNILPLAKELKSIGHKIVVETNGTIK 104 Query: 124 PPQG----IDWICVSPKAGCDLKIKGGQELKLVF 153 P + ID VSPK G +LK F Sbjct: 105 PSEELRKIIDIFSVSPKLS-----NSGHKLKYDF 133 >gi|284174859|ref|ZP_06388828.1| hypothetical protein Ssol98_09426 [Sulfolobus solfataricus 98/2] gi|261602301|gb|ACX91904.1| Radical SAM domain protein [Sulfolobus solfataricus 98/2] Length = 208 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 74/154 (48%), Gaps = 30/154 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + EIF ++QGEG G + F R + CNL +C +CDT + GT+ Sbjct: 3 YRVIEIFTSIQGEGEVIGIPSNFIRLATCNL-----------RCVWCDTKYSWEIGTEMS 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 I+E +K+ + +TGGEPLLQ +PL + L G +I VETNGTI+ Sbjct: 52 ----------IDEIIAKLDKKIKTTTITGGEPLLQNILPLAKELKSIGHKIVVETNGTIK 101 Query: 124 PPQG----IDWICVSPKAGCDLKIKGGQELKLVF 153 P + ID VSPK G +LK F Sbjct: 102 PSEELRKIIDIFSVSPKLS-----NSGHKLKYDF 130 >gi|86145928|ref|ZP_01064256.1| Organic radical activating enzyme [Vibrio sp. MED222] gi|85836383|gb|EAQ54513.1| Organic radical activating enzyme [Vibrio sp. MED222] Length = 216 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 103/240 (42%), Gaps = 63/240 (26%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68 +F T+QGEG G AVF R C + C +CDT Q + + Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQICPV-----------GCSWCDTK----QTWEALPEDET 45 Query: 69 QLADL------------IEEQWITGE--KEG---RYCVLTGGEPLLQVDVPLIQALNKRG 111 L D+ I+ Q I E K+G ++ V+TGGEP + VPL +A + G Sbjct: 46 SLGDIMVKTEDSPTWTAIDAQGIVNEYIKQGYTAKHIVITGGEPCIYDLVPLTEAFEQHG 105 Query: 112 FEIAVETNGTIEPPQGID-WICVSPKAGCDLKI--------------------KGGQELK 150 +ET+GT E D W+ VSPK K+ K ++L Sbjct: 106 CRCQIETSGTSEVKATPDTWVTVSPKVAMKAKLDILDSALVRANEIKHPVGTGKDIEQLD 165 Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ + +V PEN + +LQP+ E T L I C + WRLS+QTHK++ I Sbjct: 166 VLIARADV-PENTV------IALQPISQK--ERATQLCIDTCIER-NWRLSIQTHKYLSI 215 >gi|167757163|ref|ZP_02429290.1| hypothetical protein CLORAM_02713 [Clostridium ramosum DSM 1402] gi|167703338|gb|EDS17917.1| hypothetical protein CLORAM_02713 [Clostridium ramosum DSM 1402] Length = 220 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 18/124 (14%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y + E F+++ GEG AG++A F RF CNL C +CDT + + Sbjct: 1 MNNYKVVEKFISINGEGSRAGQLAAFIRFHYCNL-----------NCSYCDTRYANDSNS 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 + + D ++ + LTGGEPLLQ ++ LI L K GF + +ETN Sbjct: 50 NYELLSAQNILDYLKANKVVN------VTLTGGEPLLQQNIDYLIDLLLKNGFSVEIETN 103 Query: 120 GTIE 123 G+I+ Sbjct: 104 GSID 107 >gi|237735749|ref|ZP_04566230.1| radical SAM-superfamily protein [Mollicutes bacterium D7] gi|229381494|gb|EEO31585.1| radical SAM-superfamily protein [Coprobacillus sp. D7] Length = 220 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 18/124 (14%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y + E F+++ GEG AG++A F RF CNL C +CDT + + Sbjct: 1 MNNYKVVEKFISINGEGSRAGQLAAFIRFHYCNL-----------NCSYCDTRYANDSNS 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 + + D ++ + LTGGEPLLQ ++ LI L K GF + +ETN Sbjct: 50 NYELLSAQNILDYLKTNKVVN------VTLTGGEPLLQQNIDYLIDLLLKNGFSVEIETN 103 Query: 120 GTIE 123 G+I+ Sbjct: 104 GSID 107 >gi|283479535|emb|CAY75451.1| Uncharacterized protein ygcF [Erwinia pyrifoliae DSM 12163] Length = 277 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 102/231 (44%), Gaps = 35/231 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLS-AQCRFCDTDFVGI 57 Y I E+F TLQGEG + G A+F R GC + W + D+L+ + D + Sbjct: 57 YPINEMFQTLQGEGFYTGVPAIFIRLQGCPVGCSWCDTKHTWDKLADRETSLGDILLKTV 116 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G + L + I T ++ V+TGGEP + PL AL GF +E Sbjct: 117 ETDAWGAADAPALLETIRRHGWT----AKHIVITGGEPCIYDLTPLTAALQDSGFSCQIE 172 Query: 118 TNGTIEPP-QGIDWICVSPKAGCDLKIKGGQEL---------KLVFP-----QVNVSPEN 162 T+GT + W+ VSPK + ++GG ++ ++ P V+ E Sbjct: 173 TSGTHQVRCTAQTWVTVSPK----VNMRGGYDVLNQALVRADEVKHPVARQRDVDALDEL 228 Query: 163 YIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + +LQP+ + T L I C WRLS+QTHK++ I Sbjct: 229 LATLNDNKARIIALQPISQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 276 >gi|254526725|ref|ZP_05138777.1| radical activating enzyme [Prochlorococcus marinus str. MIT 9202] gi|221538149|gb|EEE40602.1| radical activating enzyme [Prochlorococcus marinus str. MIT 9202] Length = 227 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 99/237 (41%), Gaps = 51/237 (21%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E F +LQGEG HAG+ A F R +GC + C +CDT +Y Sbjct: 11 IVEQFHSLQGEGYHAGKSAFFVRLAGCKV-----------GCSWCDTK----NSWDEKKY 55 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGFEIAVET 118 + +I+ I +K +CV+TGGEPL +A+ K +I +ET Sbjct: 56 PSISIKKIIDRIKIARDKGASFCVITGGEPLQHNLDNFCKAIKKMTMREEQNSMKIHIET 115 Query: 119 NGTIEPPQGIDWICVSPK----------AGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 +G DW+ +SPK C+ ++K + + + E + Sbjct: 116 SGVNSISGSYDWMTLSPKRHSPPKNYFLKNCNEIKIIINDIKDIEFAIQIKKETLKQYQL 175 Query: 169 ER-----------FSLQPMDGPFLEENTN---LAISYCFQNPKWRLSVQTHKFIGIR 211 + F LQP N+N LAI + NP W+LS+QTHK++ I+ Sbjct: 176 SKSEDGLKREDKIFYLQPA-----WNNSNGLSLAIDFVKNNPDWKLSLQTHKYLKIK 227 >gi|146312870|ref|YP_001177944.1| radical SAM domain-containing protein [Enterobacter sp. 638] gi|145319746|gb|ABP61893.1| Radical SAM domain protein [Enterobacter sp. 638] Length = 223 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 102/249 (40%), Gaps = 71/249 (28%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDT----------- 40 Query: 64 RYNVDQLADLI------------EEQWITGEKE------------GRYCVLTGGEPLLQV 99 ++ D+LAD ++W G E R+ V+TGGEP + Sbjct: 41 KHTWDKLADREVSLFSILAKTKESDKWGAGSAEDLLAIIGRQGWTARHVVITGGEPCIHD 100 Query: 100 DVPLIQALNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQEL--------- 149 + L L K G+ +ET+GT E W+ VSPK + ++GG ++ Sbjct: 101 LMSLTDLLEKNGYSCQIETSGTHEVRCSHTAWVTVSPK----VNMRGGYDVLSQALERAD 156 Query: 150 KLVFP-----QVNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLS 201 ++ P + E E+ +LQP+ ++ T L I C WRLS Sbjct: 157 EIKHPVGRMRDIEALDELLATLTDEKQRIIALQPISQK--DDATRLCIETCIAR-NWRLS 213 Query: 202 VQTHKFIGI 210 +QTHK++ I Sbjct: 214 MQTHKYLNI 222 >gi|259909462|ref|YP_002649818.1| hypothetical protein EpC_28370 [Erwinia pyrifoliae Ep1/96] gi|224965084|emb|CAX56616.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96] Length = 223 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 102/231 (44%), Gaps = 35/231 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLS-AQCRFCDTDFVGI 57 Y I E+F TLQGEG + G A+F R GC + W + D+L+ + D + Sbjct: 3 YPINEMFQTLQGEGFYTGVPAIFIRLQGCPVGCSWCDTKHTWDKLADRETSLGDILLKTV 62 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G + L + I T ++ V+TGGEP + PL AL GF +E Sbjct: 63 ETDAWGAADAPALLETIRRHGWT----AKHIVITGGEPCIYDLTPLTAALQDSGFSCQIE 118 Query: 118 TNGTIEPP-QGIDWICVSPKAGCDLKIKGGQEL---------KLVFP-----QVNVSPEN 162 T+GT + W+ VSPK + ++GG ++ ++ P V+ E Sbjct: 119 TSGTHQVRCTAQTWVTVSPK----VNMRGGYDVLNQALVRADEVKHPVARQRDVDALDEL 174 Query: 163 YIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + +LQP+ + T L I C WRLS+QTHK++ I Sbjct: 175 LATLNDNKARIIALQPISQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222 >gi|310766631|gb|ADP11581.1| Uncharacterized protein ygcF [Erwinia sp. Ejp617] Length = 223 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 102/231 (44%), Gaps = 35/231 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLS-AQCRFCDTDFVGI 57 Y I E+F TLQGEG + G A+F R GC + W + D+L+ + D + Sbjct: 3 YPINEMFQTLQGEGFYTGVPAIFIRLQGCPVGCSWCDTKHTWDKLANRETSLGDILLKTV 62 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G + L + I T ++ V+TGGEP + PL AL GF +E Sbjct: 63 ETDAWGAADAPALLETIRRHGWT----AKHIVITGGEPCIYDLTPLTAALQDSGFSCQIE 118 Query: 118 TNGTIEPP-QGIDWICVSPKAGCDLKIKGGQEL---------KLVFP-----QVNVSPEN 162 T+GT + W+ VSPK + ++GG ++ ++ P V+ E Sbjct: 119 TSGTHQVRCTAQTWVTVSPK----VNMRGGYDVLNQALARADEVKHPVARQRDVDALDEL 174 Query: 163 YIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + +LQP+ + T L I C WRLS+QTHK++ I Sbjct: 175 LATLNDNKARIIALQPISQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222 >gi|84387075|ref|ZP_00990098.1| Organic radical activating enzyme [Vibrio splendidus 12B01] gi|84378150|gb|EAP95010.1| Organic radical activating enzyme [Vibrio splendidus 12B01] Length = 216 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 102/240 (42%), Gaps = 63/240 (26%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68 +F T+QGEG G AVF R C + C +CDT Q + + Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQICPV-----------GCSWCDTK----QTWEALPEDET 45 Query: 69 QLADL------------IEEQWITGE--KEG---RYCVLTGGEPLLQVDVPLIQALNKRG 111 L D+ I+ Q I E K+G ++ V+TGGEP + VPL +A + G Sbjct: 46 SLGDIMVKTEDSPTWSAIDAQGIVNEYIKQGYTAKHIVITGGEPCIYDLVPLTEAFEQHG 105 Query: 112 FEIAVETNGTIEPPQGID-WICVSPKAGCDLKI--------------------KGGQELK 150 +ET+GT E D W+ VSPK K+ K ++L Sbjct: 106 CRCQIETSGTSEVKATPDTWVTVSPKVAMKAKLDILDSALVRANEIKHPVGTGKDIEQLD 165 Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + +V PEN + +LQP+ E T L I C + WRLS+QTHK++ I Sbjct: 166 ALIARADV-PENTV------IALQPISQK--ERATQLCIDTCIER-NWRLSIQTHKYLSI 215 >gi|308049094|ref|YP_003912660.1| radical activating enzyme [Ferrimonas balearica DSM 9799] gi|307631284|gb|ADN75586.1| radical activating enzyme [Ferrimonas balearica DSM 9799] Length = 222 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 102/241 (42%), Gaps = 56/241 (23%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------- 53 Y + EIF T+QGEG G AVF R GC + C +CDT Sbjct: 3 YPVNEIFETIQGEGHFTGVPAVFLRLQGCPV-----------GCAWCDTRHTWEVLAEDQ 51 Query: 54 ----FVGIQGTKGGRYNVDQLADLIEEQWITGEK-EGRYCVLTGGEPLLQVDVPLIQALN 108 V G R+ L L+ +TG + R+ V+TGGEP + PL + + Sbjct: 52 VEPGLVIGAGDGEPRWAQWPLEQLVAH--LTGPQYRARHLVITGGEPCMYDLRPLTERMI 109 Query: 109 KRGFEIAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKL------------VF 153 G+ +ET+G E PQ W+ VSPK G +KGG E++ V Sbjct: 110 AAGWRCQIETSGCFEVKTDPQ--TWVTVSPKVG----MKGGLEVQRSALERANEIKHPVA 163 Query: 154 PQVNVSPENY----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209 Q +V + + + + +LQP+ L + C + WRLSVQTHK++ Sbjct: 164 MQKHVDELDALLAGVALEGKEVALQPISQQH--RANELCVRVCIER-NWRLSVQTHKYLN 220 Query: 210 I 210 I Sbjct: 221 I 221 >gi|77360060|ref|YP_339635.1| queC protein [Pseudoalteromonas haloplanktis TAC125] gi|76874971|emb|CAI86192.1| queC protein [Pseudoalteromonas haloplanktis TAC125] Length = 215 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 102/234 (43%), Gaps = 52/234 (22%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------FVGIQG 59 +F T+QGE + G ++F R GC + C +CDT V + Sbjct: 1 MFETIQGEASYTGTPSIFLRLQGCPV-----------GCSWCDTKQTWDVDNVYKVSLDE 49 Query: 60 TKGGRYNVDQLADL----IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115 T + + D A I + + ++ V+TGGEP + P+ L++ GF Sbjct: 50 TVEKKADSDHWAQASAANILALFQSRGYTAKHVVITGGEPCMYDLNPVCNLLHENGFSTQ 109 Query: 116 VETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENYI-- 164 +ET+GT E P Q W+ VSPK + ++GG E L + N V+ + ++ Sbjct: 110 IETSGTFEILAPAQ--TWVTVSPK----INMRGGFEVLTTAMQRANEIKHPVAMQKHVEE 163 Query: 165 --------GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 G + + LQP+ E T LAI C WRLS+Q HK++GI Sbjct: 164 LEELFVKTGVNPKLVYLQPISQK--ESATKLAIKTCIAK-NWRLSIQVHKYLGI 214 >gi|330959274|gb|EGH59534.1| radical SAM domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 215 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 V L D+IE+ RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -VQALDDIIEQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 +D V P+ DLK G +E+ Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127 >gi|157414296|ref|YP_001485162.1| putative organic radical activating protein [Prochlorococcus marinus str. MIT 9215] gi|157388871|gb|ABV51576.1| possible organic radical activating enzyme [Prochlorococcus marinus str. MIT 9215] Length = 223 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 98/237 (41%), Gaps = 51/237 (21%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E F +LQGEG HAG+ A F R +GC + C +CDT +Y Sbjct: 7 IVEQFHSLQGEGYHAGKSAFFVRLAGCKV-----------GCSWCDTK----NSWDEKKY 51 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGFEIAVET 118 + +I+ I +K +CV+TGGEPL +A+ K +I +ET Sbjct: 52 PSISIKKIIDRIKIARDKGASFCVITGGEPLQHNLDNFCKAIKKMTMREEQNSMKIHIET 111 Query: 119 NGTIEPPQGIDWICVSPK----------AGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 +G DW+ +SPK C+ ++K + + + E + Sbjct: 112 SGVNSISGSYDWMTLSPKRHSPPKNYFLKKCNEIKIIINDIKDIEFAIQIKKETLKQYQL 171 Query: 169 ER-----------FSLQPMDGPFLEENTN---LAISYCFQNPKWRLSVQTHKFIGIR 211 + F LQP N N LAI + NP W+LS+QTHK++ I+ Sbjct: 172 SKSEDGLKKEDKIFYLQPA-----WNNANGLSLAIDFVKNNPDWKLSLQTHKYLKIK 223 >gi|237809236|ref|YP_002893676.1| radical activating enzyme [Tolumonas auensis DSM 9187] gi|237501497|gb|ACQ94090.1| radical activating enzyme [Tolumonas auensis DSM 9187] Length = 225 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 105/242 (43%), Gaps = 58/242 (23%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF ++QGEG +G A+F R GC + C +CDT + Sbjct: 6 YPINEIFQSIQGEGFFSGVPAIFVRLQGCKV-----------GCSWCDTK----HSWELD 50 Query: 64 RYNVDQLADLIEEQ-------WITGEK----------EGRYCVLTGGEPLLQVDVPLIQA 106 N+ + L ++ W++ E+ R+ V+TGGEP + L Q Sbjct: 51 ADNLIPVRQLFTDKKPKAGWSWLSPEEILSCFSAEEYTARHVVITGGEPCEYDLMVLSQT 110 Query: 107 LNKRGFEIAVETNGTIEPPQGID--WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----V 158 L G+ + +ET+GT +P Q D W+ VSPK + + GG + L V + N V Sbjct: 111 LIAHGYRVQIETSGT-QPVQADDACWVTVSPK----INMAGGYDVLPDVLLRANEIKHPV 165 Query: 159 SPENYI--------GFDFER--FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + +I G D LQP+ T LA+ C Q WRLSVQ HK++ Sbjct: 166 ATAKHIAQLDALLAGIDTSEKVICLQPISQK--SRATELAMKICIQR-NWRLSVQLHKYL 222 Query: 209 GI 210 I Sbjct: 223 DI 224 >gi|307594720|ref|YP_003901037.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307549921|gb|ADN49986.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429] Length = 220 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 26/152 (17%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK + EIF + QGEG +AGR AVF R + CNL +C +CDT + GT Sbjct: 1 MKSVRVIEIFKSWQGEGPNAGREAVFLRLALCNL-----------RCSWCDTKYSWFGGT 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVET 118 + ++V E + R+ V+TGGEPLL + + L++ + +GF + VET Sbjct: 50 EMNVHDV-------YEVLMKTAGGVRHLVVTGGEPLLWSRELLQLLRFIRAQGFFVEVET 102 Query: 119 NGTIEPPQGIDWI---CVSPK---AGCDLKIK 144 NGT+ P + ++++ VSPK +G ++++ Sbjct: 103 NGTLRPGELVNYVDEFNVSPKLSNSGVSVRVR 134 >gi|108763752|ref|YP_628748.1| radical SAM domain-containing protein [Myxococcus xanthus DK 1622] gi|108467632|gb|ABF92817.1| radical SAM domain protein [Myxococcus xanthus DK 1622] Length = 230 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 +KEI+L++QGE HAG + F R +GC+L +C +CD++F G + Sbjct: 21 VKEIYLSVQGESSHAGLLCAFIRLTGCHL-----------RCTYCDSEFAFHGGAR---- 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 ++AD++ E + G + V TGGEPLLQ V PL++AL GF++ +ET+G I+ Sbjct: 66 --RKIADIVSE--VRGLRTPMVEV-TGGEPLLQPGVYPLMEALLDAGFKVLLETSGAID 119 >gi|148243542|ref|YP_001228699.1| organic radical activating protein [Synechococcus sp. RCC307] gi|147851852|emb|CAK29346.1| Organic radical activating enzyme [Synechococcus sp. RCC307] Length = 202 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 102/228 (44%), Gaps = 43/228 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + E F +LQGEG HAGR A F R GC + C +CDT Q Sbjct: 1 MSSLPVVETFHSLQGEGLHAGRSAFFIRLGGCTV-----------GCSWCDTKHSWPQTA 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA--VET 118 + + L E ++ + V+TGGEPL QAL + + +ET Sbjct: 50 ----HPALETQALAAEAAEAQQQGAAFVVITGGEPLHHNLDGFCQALAEMAPTLPRHLET 105 Query: 119 NGTIEPPQG-IDWICVSPKAG----------CD-LK--IKGGQELKLVFPQVNVSPENYI 164 +G ++P G WI +SPKA CD LK + G ++L +P+ + Sbjct: 106 SG-VDPLSGSFSWITLSPKAHKPPTQELLACCDELKAVVHGPEDLAFAEAMAAQAPQAH- 163 Query: 165 GFDFERFSLQP-MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + LQP D P + LA+ + +P WRLS+Q+HK++G+R Sbjct: 164 ------WLLQPGWDSP---QGQQLAVEFVRNHPLWRLSLQSHKWLGVR 202 >gi|159900637|ref|YP_001546884.1| radical SAM domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159893676|gb|ABX06756.1| Radical SAM domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 230 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 20/141 (14%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 ++ E++ ++QGEG G F RF CNL +C +CDT + +GG+ Sbjct: 2 NVMEVYRSVQGEGTLMGVPTTFVRFFACNL-----------RCSWCDTKY-SWSVKEGGK 49 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 + +A L + ++ R+ VLTGGEP+LQ ++P L Q L G + VETN T+ Sbjct: 50 WEDLPIATLAQR---IADQGARHVVLTGGEPMLQRELPALAQTLRAAGHHLTVETNSTLF 106 Query: 124 PPQGIDWI---CVSPK-AGCD 140 P+ ++ I +SPK AG + Sbjct: 107 RPELVELINLWSLSPKLAGAN 127 >gi|153005327|ref|YP_001379652.1| radical SAM domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152028900|gb|ABS26668.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5] Length = 210 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 105/229 (45%), Gaps = 55/229 (24%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +LQGEG AGR VF RF+GC+L +C +CD+ + G + R Sbjct: 3 VTEIFFSLQGEGTRAGRPCVFVRFTGCDL-----------RCGYCDSAYAFHGGRELTRA 51 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG---- 120 + LA++ + LTGGEP+LQ ++P L + L RG E+ VET+G Sbjct: 52 EI--LAEI-------ARHPAKLVCLTGGEPMLQRELPELARELVARGHEVTVETHGQRPL 102 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENYIGF------DFERFSL 173 PP+ I + D+K G +E ++ + P++ + F D+ R+S+ Sbjct: 103 DALPPETIRIV--------DVKTPGSREEAKDLAYLDGLRPQDEVKFVVCSEPDY-RWSV 153 Query: 174 QPMDGPFLEENTNLAISYCF------QNPKW--------RLSVQTHKFI 208 + LE +L S + + +W RLS+Q HK I Sbjct: 154 DVVRRHRLEGRAHLLFSPAWGEVEPRELARWILRDGLDARLSLQIHKVI 202 >gi|146329949|ref|YP_001210257.1| BcepGomrgp37 [Burkholderia phage BcepGomr] gi|145321125|gb|ABP63608.1| BcepGomrgp37 [Burkholderia phage BcepGomr] Length = 260 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 27/148 (18%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG--------- 56 + IF T+QGEG + GR AVF R +GCNL QC CDT++ Sbjct: 22 VHSIFYTIQGEGPYVGRPAVFIRLAGCNL-----------QCPGCDTEYSARKRMGLLEI 70 Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 + + Y + A E + V+TGGEP Q PLI L+ G+++ + Sbjct: 71 LTAVQTAIYTRPR-ARFALEPAFERKIPRPLIVITGGEPFRQSLFPLIWKLSGLGYKVQI 129 Query: 117 ETNGTIEPPQGI--DW----ICVSPKAG 138 E+NGT+ P G +W + +SPKAG Sbjct: 130 ESNGTLAPLAGPFEEWPPFEVVISPKAG 157 >gi|229592292|ref|YP_002874411.1| putative radical SAM-superfamily protein [Pseudomonas fluorescens SBW25] gi|229364158|emb|CAY51804.1| putative radical SAM-superfamily protein [Pseudomonas fluorescens SBW25] Length = 215 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 29/146 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 V L D++E+ + G K RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -VRTLDDILEQ--VAGYKP-RYVCVTGGEPLAQPNAIPLLKQLCDAGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQE 148 +D V P+ DLK G +E Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKE 126 >gi|315126983|ref|YP_004068986.1| queC protein [Pseudoalteromonas sp. SM9913] gi|315015497|gb|ADT68835.1| queC protein [Pseudoalteromonas sp. SM9913] Length = 215 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 98/242 (40%), Gaps = 68/242 (28%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------FVGIQG 59 +F T+QGE G ++F R GC + C +CDT V + Sbjct: 1 MFETIQGEASFTGTPSIFLRLQGCPV-----------GCSWCDTKQTWDVDNVYKVSLDD 49 Query: 60 TKGGRYNVDQLADLIEEQWITGEKE----GRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115 T + + D A+ Q + K ++ V+TGGEP + P+ L+ GF Sbjct: 50 TVEKKADSDHWAEASAAQVLELFKSRGYTAKHVVITGGEPCMYDLNPVCNLLHDHGFSTQ 109 Query: 116 VETNGTIE---PPQGIDWICVSPKAGCDLKIKGG------------------------QE 148 +ET+GT E P Q W+ VSPK + ++GG +E Sbjct: 110 IETSGTFEILAPAQ--TWVTVSPK----INMRGGYKVLSSAMQRADEIKHPVAMQKHVEE 163 Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 L+ +F V+P + LQP+ T LAI C WRLS+Q HK++ Sbjct: 164 LEELFTATGVNP--------KLVYLQPISQK--TSATKLAIDTCIAK-NWRLSIQVHKYL 212 Query: 209 GI 210 GI Sbjct: 213 GI 214 >gi|269967852|ref|ZP_06181896.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269827557|gb|EEZ81847.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 226 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 94/242 (38%), Gaps = 55/242 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 LY + E+F T+QGEG G AVF R C + C +CDT Sbjct: 5 LYKLNEMFETIQGEGVFTGVPAVFVRLQECPV-----------GCSWCDTKQTWYADEND 53 Query: 63 GRYNVDQL-------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 R D L A+ I EQ+ ++ V+TGGEP + PL +A Sbjct: 54 QRQIGDILVKTEDSPTWCVASAENIVEQYQQQGFNAKHIVITGGEPCIYDLRPLTKAFED 113 Query: 110 RGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKI--------------------KGGQE 148 G + +ET+GT E + W+ VSPK K+ K Sbjct: 114 MGCQCQIETSGTSEVITSENTWVTVSPKVAMKGKLPVLNSALERANEIKHPVGTQKDIDH 173 Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 L + NV+ E I +LQP+ T L I C WRLSVQTHK++ Sbjct: 174 LDDLLANANVAAETII-------ALQPISQK--PRATQLCIDTCIAR-NWRLSVQTHKYL 223 Query: 209 GI 210 I Sbjct: 224 SI 225 >gi|256819499|ref|YP_003140778.1| Radical SAM domain-containing protein [Capnocytophaga ochracea DSM 7271] gi|256581082|gb|ACU92217.1| Radical SAM domain protein [Capnocytophaga ochracea DSM 7271] Length = 210 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 93/229 (40%), Gaps = 51/229 (22%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 +L + E F TLQGEG + G A F R GC++ C +CD + + Sbjct: 14 ELLPLMEAFYTLQGEGFYKGTAAYFIRLGGCDV-----------GCHWCDVK----ESWQ 58 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + + + ++ E + ++TGGEPL+ L + L G +ET+G Sbjct: 59 AEAHPLVPVDTIVAE----ALAHSKTIIITGGEPLMWNLTLLTEKLRAGGARTHIETSGA 114 Query: 122 IEPPQGIDWICVSPKAGCDLKIK--------GGQELKLVF-----------PQVNVSPEN 162 DWIC+SPK KIK ELK+V VSPE Sbjct: 115 HPLSGSWDWICLSPK-----KIKRPVGDVLQKANELKMVIYNNHDFIFAEEMAAQVSPEC 169 Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + LQP E + + Y +P+W+ S+Q HK++ IR Sbjct: 170 LL-------YLQPEWSKRAEVMPKI-VDYVMAHPQWKASLQMHKYLDIR 210 >gi|313906547|ref|ZP_07839877.1| Radical SAM domain protein [Eubacterium cellulosolvens 6] gi|313468616|gb|EFR63988.1| Radical SAM domain protein [Eubacterium cellulosolvens 6] Length = 218 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 19/120 (15%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F+++ GEG HAG +AVF RF GCNL C +CDT + G Sbjct: 3 VVEKFVSINGEGTHAGELAVFVRFRGCNL-----------NCSYCDTMWANEPGCPYAEE 51 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALN-KRGFEIAVETNGTIE 123 + +Q+ IEE + + LTGGEPLLQ ++P L++ L+ K+ + +ETNG ++ Sbjct: 52 SPEQIVSYIEETKV------KNVTLTGGEPLLQKEMPELLRLLSEKKELRVEIETNGAVD 105 >gi|312884429|ref|ZP_07744133.1| hypothetical protein VIBC2010_14679 [Vibrio caribbenthicus ATCC BAA-2122] gi|309367741|gb|EFP95289.1| hypothetical protein VIBC2010_14679 [Vibrio caribbenthicus ATCC BAA-2122] Length = 238 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 97/241 (40%), Gaps = 51/241 (21%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 KLY + E+F T+QGEG G +VF R C + C +CDT K Sbjct: 16 KLYKVNEMFETIQGEGVFTGVPSVFVRLQECPV-----------GCAWCDTKQTWDASPK 64 Query: 62 GGRYNVDQL-------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 R + L A+ + +++ R+ V+TGGEP + +PL +A Sbjct: 65 DERTLKEILSKTTDSPTWCRASANDVVSEYLRQGYTARHIVITGGEPCIYDLIPLTEAFE 124 Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY---- 163 + +ET+GT E + W+ VSPK K+ V P + Sbjct: 125 AINCKCQIETSGTSEVITSPNTWVTVSPKIAMKGKLP-------VLPSALIRANELKHPV 177 Query: 164 -IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK-------------WRLSVQTHKFIG 209 D +R + G L E+T +A+ Q P+ WRLS+QTHK++ Sbjct: 178 ATQKDIDRLD-DLLSGVSLSEDTEIALQPISQKPRATELCIEVCIKRNWRLSIQTHKYLS 236 Query: 210 I 210 I Sbjct: 237 I 237 >gi|262275962|ref|ZP_06053771.1| queuosine Biosynthesis QueE Radical SAM [Grimontia hollisae CIP 101886] gi|262219770|gb|EEY71086.1| queuosine Biosynthesis QueE Radical SAM [Grimontia hollisae CIP 101886] Length = 220 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 100/236 (42%), Gaps = 45/236 (19%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT----DFVGIQ 58 +Y++ EIF T+QGEG G +VF R GC C +CDT D + + Sbjct: 1 MYNVNEIFETIQGEGTFTGIPSVFIRLQGC-----------PVGCPWCDTRQTWDTLPLD 49 Query: 59 ----GTKGGRYNVDQLADLIEEQWITGEKEGRYC----VLTGGEPLLQVDVPLIQALNKR 110 GT + + L + + I + RY V+TGGEP + +PL L+ Sbjct: 50 QRDFGTIIAKNDESPLWARVSAEDILSHLQSRYTAKHIVITGGEPCMFDLMPLTSLLDAH 109 Query: 111 GFEIAVETNGT-IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----VSPEN-- 162 G+ +ET+GT + W+ VSPK K+ LK + N V E+ Sbjct: 110 GYRCQIETSGTYVVYATENTWVTVSPKINMRGKLPI---LKEALDRANEIKHPVGTESDI 166 Query: 163 --------YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ + +LQP+ T L I C WRLSVQTHK++ I Sbjct: 167 EKLDELLKHVDLKGKEVALQPISQK--ARATALCIETCIAR-NWRLSVQTHKYLNI 219 >gi|154175412|ref|YP_001407498.1| FO synthase subunit 2 [Campylobacter curvus 525.92] gi|153793229|gb|EAU01215.2| FO synthase subunit 2 2 (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 2 2) [Campylobacter curvus 525.92] Length = 256 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 48/126 (38%), Positives = 69/126 (54%), Gaps = 11/126 (8%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNL----WSGREQDRLSAQCRF-CDTDFVGIQGT-K 61 E FL++QGEG + GR+AVF RF GCNL + + + + + CD+ +G K Sbjct: 13 ESFLSVQGEGAYQGRLAVFLRFFGCNLNCIGFDVKTRSNKTGEILIGCDSARAVFKGHFK 72 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----VPLIQALNKRGFEIAVE 117 RY+ D++ L+ + G K VLTGGEPL+ + L+Q L GF++ E Sbjct: 73 SKRYSSDEILSLV-KNICKGLKTRPIVVLTGGEPLIHHKNENFINLVQNLLNLGFDVHFE 131 Query: 118 TNGTIE 123 TNGTIE Sbjct: 132 TNGTIE 137 >gi|315180245|gb|ADT87159.1| Organic radical activating enzyme [Vibrio furnissii NCTC 11218] Length = 246 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 97/231 (41%), Gaps = 33/231 (14%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59 LY + E+F T+QGEG G AVF R C + W +Q +A D + ++ Sbjct: 25 LYKVNEMFETIQGEGVFTGVPAVFVRLQECPVGCAWCDTKQTWDAAPADERSFDEILVKT 84 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + +IE G ++ V+TGGEP + VPL QA G +ET+ Sbjct: 85 EDNPNWCSASAQQIIERYRAQG-YTAKHIVITGGEPCIYDLVPLTQAFEAIGCRCQIETS 143 Query: 120 GTIEPPQGID-WICVSPKAG-------CDLKIKGGQELKL-VFPQVNVS----------- 159 GT + W+ VSPK D+ ++ E+K V + ++ Sbjct: 144 GTFAVQATENTWVTVSPKVAMKGKLPVVDVALQRANEIKHPVATEKDIDNLDQLLARAGV 203 Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 PE + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 204 PETTV------VALQPISQK--PRATQLCIDTCIAR-NWRLSIQTHKYLSI 245 >gi|260768533|ref|ZP_05877467.1| queuosine Biosynthesis QueE Radical SAM [Vibrio furnissii CIP 102972] gi|260616563|gb|EEX41748.1| queuosine Biosynthesis QueE Radical SAM [Vibrio furnissii CIP 102972] Length = 246 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 94/227 (41%), Gaps = 25/227 (11%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59 LY + E+F T+QGEG G AVF R C + W +Q +A D + ++ Sbjct: 25 LYKVNEMFETIQGEGVFTGVPAVFVRLQECPVGCAWCDTKQTWDAAPADERSFDEILVKT 84 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + +IE G ++ V+TGGEP + VPL QA G +ET+ Sbjct: 85 EDNPNWCSASAQQIIERYRAQGYT-AKHIVITGGEPCIYDLVPLTQAFEAIGCRCQIETS 143 Query: 120 GTIEPPQGID-WICVSPKAG-------CDLKIKGGQELKLVFPQVNVSPENYIGFDFER- 170 GT + W+ VSPK D+ ++ E+K P + + R Sbjct: 144 GTFAVQATENTWVTVSPKVAMKGKLPVVDVALQRANEIK--HPVATEKDIDNLDQLLARA 201 Query: 171 -------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ T L I C WRLS+QTHK++ I Sbjct: 202 GVPATTVVALQPISQK--PRATQLCIDTCIAR-NWRLSIQTHKYLSI 245 >gi|257463610|ref|ZP_05628001.1| radical SAM domain-containing protein [Fusobacterium sp. D12] gi|317061164|ref|ZP_07925649.1| radical SAM domain-containing protein [Fusobacterium sp. D12] gi|313686840|gb|EFS23675.1| radical SAM domain-containing protein [Fusobacterium sp. D12] Length = 222 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 22/146 (15%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y + E+F ++ GEG AG++A+F RF CNL C +CDT + T Sbjct: 1 MPKYKVVEMFESINGEGKKAGQLALFIRFQFCNL-----------NCSYCDTKWA---NT 46 Query: 61 KGGRYNVDQLADLIEEQWITGEKEG-RYCVLTGGEPLLQVDV-PLIQALNK-RGFEIAVE 117 K + L +++E T + G + LTGGEPLLQ + L++A +K + FE+ +E Sbjct: 47 KKSPFTWMSLEEILE----TARQRGIKNITLTGGEPLLQSHIFALLEAFSKEKMFEVEIE 102 Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKI 143 TNG+I P + I P D K+ Sbjct: 103 TNGSI-PLKKFQSIENPPSFTLDYKL 127 >gi|254228266|ref|ZP_04921695.1| Organic radical activating enzymes [Vibrio sp. Ex25] gi|262394169|ref|YP_003286023.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. Ex25] gi|151939339|gb|EDN58168.1| Organic radical activating enzymes [Vibrio sp. Ex25] gi|262337763|gb|ACY51558.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. Ex25] Length = 226 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 97/232 (41%), Gaps = 35/232 (15%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59 LY + E+F T+QGEG G AVF R C + W +Q + + + ++ Sbjct: 5 LYKLNEMFETIQGEGVFTGVPAVFVRLQECPVGCSWCDTKQTWYADENDQRQIGDILVKT 64 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + V +++E+ + G ++ V+TGGEP + PL +A G + +ET+ Sbjct: 65 EDSPTWCVASAENIVEQYQLQGFN-AKHIVITGGEPCIYDLRPLTKAFEDMGCQCQIETS 123 Query: 120 GTIEPPQGID-WICVSPKAGCDLKI--------------------KGGQELKLVFPQVNV 158 GT E + W+ VSPK K+ K L + NV Sbjct: 124 GTSEVITSENTWVTVSPKVAMKGKLPVLNSALERANEIKHPVGTQKDIDHLDELLANANV 183 Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E I +LQP+ T L I C WRLSVQTHK++ I Sbjct: 184 AVETVI-------ALQPISQK--PRATQLCIETCIAR-NWRLSVQTHKYLSI 225 >gi|315224929|ref|ZP_07866748.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Capnocytophaga ochracea F0287] gi|314945042|gb|EFS97072.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Capnocytophaga ochracea F0287] Length = 210 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 93/229 (40%), Gaps = 51/229 (22%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 +L + E F TLQGEG + G A F R GC++ C +CD + + Sbjct: 14 ELLPLMEAFYTLQGEGFYKGTAAYFIRLGGCDV-----------GCHWCDVK----ESWQ 58 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + + + ++ E + ++TGGEPL+ L + L G +ET+G Sbjct: 59 AEAHPLVPVDTIVAE----ALAHSKTIIITGGEPLMWNLTLLTEKLRAGGARTHIETSGA 114 Query: 122 IEPPQGIDWICVSPKAGCDLKIK--------GGQELKLVFPQ-----------VNVSPEN 162 DWIC+SPK KIK ELK+V VSPE Sbjct: 115 HPLSGTWDWICLSPK-----KIKRPVGDVLQKANELKMVIYNNHDFIFAEEIAAQVSPEC 169 Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + LQP E + + Y +P+W+ S+Q HK++ IR Sbjct: 170 LL-------YLQPEWSKRAEVMPKI-VDYVMAHPQWKASLQMHKYLDIR 210 >gi|257059021|ref|YP_003136909.1| radical activating enzyme [Cyanothece sp. PCC 8802] gi|256589187|gb|ACV00074.1| radical activating enzyme [Cyanothece sp. PCC 8802] Length = 205 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 87/221 (39%), Gaps = 41/221 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I E F ++QGEG G A F R +GC++ C +CD + Sbjct: 11 YPIVETFHSIQGEGVWTGVNAFFIRLAGCDV-----------HCPWCDQK----ESWPVQ 55 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 Y L L E ++TGGEPL+ PL L G + +ET+G+ Sbjct: 56 PYPQQSLEALGEA---AKRANPAIVIITGGEPLMHNLDPLTAQLRGLGLRVHLETSGSHP 112 Query: 124 PPQGIDWICVSPKA-------------GCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 DW+ SPK + I ++L+ Q P I + Sbjct: 113 FSGQFDWVTFSPKPFKLPHESIYPQVDELKVVITSQEDLQWAEHQAAQVPLKTIKY---- 168 Query: 171 FSLQP-MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP + P E+ L Y +P WR+S+Q HKF+G+ Sbjct: 169 --LQPEWNTP---ESQQLIFDYVLHHPDWRISLQVHKFLGV 204 >gi|148982371|ref|ZP_01816736.1| organic radical activating enzyme [Vibrionales bacterium SWAT-3] gi|145960507|gb|EDK25873.1| organic radical activating enzyme [Vibrionales bacterium SWAT-3] Length = 216 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 100/240 (41%), Gaps = 63/240 (26%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68 +F T+QGEG G AVF R C + C +CDT Q + + Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQICPV-----------GCSWCDTK----QTWEALPEDET 45 Query: 69 QLADL------------IEEQWITGE--KEG---RYCVLTGGEPLLQVDVPLIQALNKRG 111 L D+ I+ Q I E K+G ++ V+TGGEP + VPL +A K G Sbjct: 46 SLGDIMVKTEDSPTWSSIDAQGIVNEYIKQGYTAKHIVITGGEPCIYDLVPLTEAFEKHG 105 Query: 112 FEIAVETNGTIEPPQGID-WICVSPKAGCDLKI--------------------KGGQELK 150 +ET+GT E D W+ VSPK K+ K ++L Sbjct: 106 CRCQIETSGTSEVKATPDTWVTVSPKVAMKAKLEILDSALQRANEIKHPVGTSKDIEQLD 165 Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + VS + I +LQP+ + T L I C + WRLS+QTHK++ I Sbjct: 166 GLLERAEVSDDTVI-------ALQPISQK--DRATKLCIDTCIER-NWRLSIQTHKYLSI 215 >gi|330811384|ref|YP_004355846.1| Putative radical SAM-superfamily protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379492|gb|AEA70842.1| Putative radical SAM-superfamily protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 215 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 51/228 (22%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + L D++E+ RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -LRTLDDILEQ---VASYRPRYVCVTGGEPLAQPNAIPLLKQLCDAGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQE--------LKLVFPQVNV-----SPENY------ 163 +D V P+ DLK G +E ++L+ P V S E+Y Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEAHRNRYENIELLTPNDQVKFVICSREDYDWAVSK 160 Query: 164 -IGFDFERFSLQPMDGPFLEENT--NLAISYCFQNPKWRLSVQTHKFI 208 I + ++ + + + P + + +LA N RL +Q HK++ Sbjct: 161 LIQYGLDQRAGEVLLSPSHHDLSARDLADWVVADNLPVRLQLQLHKYL 208 >gi|149191047|ref|ZP_01869307.1| organic radical activating enzyme [Vibrio shilonii AK1] gi|148835075|gb|EDL52052.1| organic radical activating enzyme [Vibrio shilonii AK1] Length = 226 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 100/236 (42%), Gaps = 45/236 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT----------- 52 + I E+F T+QGEG G AVF R CN+ C +CDT Sbjct: 6 FKINEMFETIQGEGMFTGVPAVFIRLQICNV-----------GCSWCDTKQTWDANNEDQ 54 Query: 53 ----DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 + + QG +VD A I + + + ++ V+TGGEP L +A Sbjct: 55 RSFGEIITKQGDSPTWSDVD--AAEIVAMYQSQQFNAKHIVITGGEPCEYDLTALCEAFE 112 Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLK-------IKGGQELKL-VFPQVNVS 159 G +ET+GT E + W+ VSPK K ++ E+K V Q NV Sbjct: 113 AIGCRCQIETSGTSEIRVTPVTWVTVSPKVAMKGKLPVLSSSLERADEIKHPVATQKNVD 172 Query: 160 PENYI--GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + G + + +LQP+ T L I C Q WRLSVQTHK++ I Sbjct: 173 QLDELLQGVELKSDVVIALQPISQK--PRATELCIETCIQR-NWRLSVQTHKYLSI 225 >gi|325107837|ref|YP_004268905.1| radical SAM protein [Planctomyces brasiliensis DSM 5305] gi|324968105|gb|ADY58883.1| Radical SAM domain protein [Planctomyces brasiliensis DSM 5305] Length = 241 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 19/132 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF ++QGEG + G +VF R SGCNL +C FCDT + +G Sbjct: 18 ISEIFASIQGEGCYTGTPSVFVRTSGCNL-----------RCHFCDTPYAS-WNPEGETL 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124 ++ + + E W + VLTGGEP++ D+ L AL ++ I +ET GT+ Sbjct: 66 SIADIVARVNEWW------HPHVVLTGGEPMMVRDLAELTSALKRQDRFITIETAGTVYQ 119 Query: 125 PQGIDWICVSPK 136 D + +SPK Sbjct: 120 DIEADLMSISPK 131 >gi|262171605|ref|ZP_06039283.1| queuosine Biosynthesis QueE Radical SAM [Vibrio mimicus MB-451] gi|261892681|gb|EEY38667.1| queuosine Biosynthesis QueE Radical SAM [Vibrio mimicus MB-451] Length = 222 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 95/227 (41%), Gaps = 25/227 (11%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59 +Y I E+F T+QGEG G AVF R GC + W +Q + + + ++ Sbjct: 1 MYRINEMFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLESDQTSFPQILLKT 60 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + + D+IE G + ++ V+TGGEP + L QA G + +ET+ Sbjct: 61 SDAPTWCQASAQDVIERYRAQG-YQAKHIVITGGEPCIYDLTELTQAFEAIGCQCQIETS 119 Query: 120 GTIEP-PQGIDWICVSPKAG-------CDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171 GT E W+ VSPK D ++ E+K P + + R Sbjct: 120 GTYEILATPTTWVTVSPKVAMKGKLPILDSALQRANEIK--HPVATEKDIDNLDELLVRA 177 Query: 172 S--------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 S LQP+ T L I C WRLS+QTHK++ I Sbjct: 178 SVDAKTVIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 221 >gi|149173902|ref|ZP_01852531.1| hypothetical protein PM8797T_05675 [Planctomyces maris DSM 8797] gi|148847432|gb|EDL61766.1| hypothetical protein PM8797T_05675 [Planctomyces maris DSM 8797] Length = 226 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 19/143 (13%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF + QGEG G ++F R SGCNL +C FCDT + +G + Sbjct: 3 ISEIFHSPQGEGKWIGVPSIFIRTSGCNL-----------RCWFCDTPYTS-WNPEGEKM 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP 124 +VDQ+ + I + + + V+TGGEP+L ++ L Q L+ G I +ET GTI Sbjct: 51 SVDQILEHI------AQYDCEHVVVTGGEPMLSHEIESLTQRLHADGKIITIETAGTILS 104 Query: 125 PQGIDWICVSPKAGCDLKIKGGQ 147 D + +SPK + + + Sbjct: 105 DVHADLMSISPKLSNSIPVDNPE 127 >gi|261210910|ref|ZP_05925200.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. RC341] gi|260839885|gb|EEX66485.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. RC341] Length = 222 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 96/227 (42%), Gaps = 25/227 (11%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59 +Y I E+F T+QGEG G AVF R GC + W +Q S + ++ Sbjct: 1 MYRINEMFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWESLDADQTSFSQILLKT 60 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + + D++ +++ T + ++ V+TGGEP + L QA G +ET+ Sbjct: 61 SDAPTWCHASAQDVV-QRYQTQGYQAKHIVITGGEPCIYDLTELTQAFESIGCHCQIETS 119 Query: 120 GTIE-PPQGIDWICVSPKAG-------CDLKIKGGQELKLVFPQVNVSPENYIGFDFER- 170 GT E + W+ VSPK D ++ E+K P + + R Sbjct: 120 GTYEVRATPLTWVTVSPKVAMKGKLPILDSALQRANEIK--HPVATEKDIDNLDELLVRA 177 Query: 171 -------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ T L I C WRLS+QTHK++ I Sbjct: 178 KVTEKTVVALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 221 >gi|218245972|ref|YP_002371343.1| hypothetical protein PCC8801_1116 [Cyanothece sp. PCC 8801] gi|218166450|gb|ACK65187.1| conserved hypothetical protein [Cyanothece sp. PCC 8801] Length = 205 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 87/221 (39%), Gaps = 41/221 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I E F ++QGEG G A F R +GC++ C +CD + Sbjct: 11 YPIVETFHSIQGEGVWMGVNAFFIRLAGCDV-----------HCPWCDQK----ESWPVQ 55 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 Y L L E ++TGGEPL+ PL L G + +ET+G+ Sbjct: 56 PYPQQSLEALGEA---AKRANPAIVIITGGEPLMHNLDPLTAQLRGLGLRVHLETSGSHP 112 Query: 124 PPQGIDWICVSPKA-------------GCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 DW+ SPK + I ++L+ Q P I + Sbjct: 113 FSGQFDWVTFSPKPFKLPHESIYPQVDELKVVITSQEDLQWAEHQAAQVPLKTIKY---- 168 Query: 171 FSLQP-MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP + P E+ L Y +P WR+S+Q HKF+G+ Sbjct: 169 --LQPEWNTP---ESQQLIFDYVLHHPDWRISLQVHKFLGV 204 >gi|156937024|ref|YP_001434820.1| radical SAM domain-containing protein [Ignicoccus hospitalis KIN4/I] gi|156566008|gb|ABU81413.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I] Length = 218 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 27/150 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + + E FL++QGEG G A F R + CNL +C +CDT + + Sbjct: 1 MSEFEVIEEFLSIQGEGSLVGTPAYFVRLARCNL-----------RCPWCDTKY---SWS 46 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDV-PLIQALNKRGFE--IAV 116 G + V ++A+ E + VLTGGEPLL Q+++ ++ L ++GF+ + + Sbjct: 47 PGLKVPVSEVAERALESGVG------LIVLTGGEPLLWQLEIRSFLKELEEKGFKGLVQI 100 Query: 117 ETNGTIEPP--QGID-WICVSPKAGCDLKI 143 ETNGTI P +G + WI VSPK CD I Sbjct: 101 ETNGTIYPSALEGHEIWITVSPKVTCDYYI 130 >gi|328953829|ref|YP_004371163.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109] gi|328454153|gb|AEB09982.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109] Length = 213 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/123 (36%), Positives = 66/123 (53%), Gaps = 22/123 (17%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 E F+++ GE AG F R SGCNL +CR+CDT + +G + Sbjct: 7 ETFISIMGEASFAGLPGFFIRLSGCNL-----------RCRYCDTTYAYAEGVE------ 49 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ 126 LA L+ E +G R ++TGGEPLLQ + + L+ AL +RGF + +ETNG+ P + Sbjct: 50 RSLASLLGEAGASGY---RLVLVTGGEPLLQEECLVLLSALVERGFTVLLETNGS-RPLE 105 Query: 127 GID 129 +D Sbjct: 106 AVD 108 >gi|209809367|ref|YP_002264905.1| hypothetical protein VSAL_II0580 [Aliivibrio salmonicida LFI1238] gi|208010929|emb|CAQ81334.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 226 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 98/235 (41%), Gaps = 41/235 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD-TDFVGI---- 57 L+ I E+F T+QGEG G ++F R GC + + + D TD I Sbjct: 5 LFKINELFETIQGEGTFTGVPSIFLRLQGCPVGCSWCDTKQTWDVELSDKTDLATILAKT 64 Query: 58 -QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 Q+ D++ +Q T ++ V+TGGEP + L + L K G+ + Sbjct: 65 EDAPSWTELTALQIIDMLVQQGYT----AKHMVITGGEPCMYDLTSLTEELEKNGYRCQI 120 Query: 117 ETNGTIEPPQGID-WICVSPKAGCDLKI--------------------KGGQELKLVFPQ 155 ET+GT + W+ VSPK K+ K ++L+ + Sbjct: 121 ETSGTYPILTSNNTWVTVSPKINMKGKLPVLDEALMRANEIKHPVGTTKDIEQLEALLDG 180 Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 VN+ + I +LQP+ T L I C + WRLS+QTHK++ I Sbjct: 181 VNLLTDVTI-------ALQPISQK--PRATELCIETCIKK-NWRLSIQTHKYLAI 225 >gi|262165604|ref|ZP_06033341.1| queuosine Biosynthesis QueE Radical SAM [Vibrio mimicus VM223] gi|262025320|gb|EEY43988.1| queuosine Biosynthesis QueE Radical SAM [Vibrio mimicus VM223] Length = 222 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 95/227 (41%), Gaps = 25/227 (11%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59 +Y I E+F T+QGEG G AVF R GC + W +Q + + + ++ Sbjct: 1 MYRINEMFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLESDQTSFPQILLKT 60 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + + D+IE G + ++ V+TGGEP + L QA G + +ET+ Sbjct: 61 SDAPTWCQASAQDVIERYRAQG-YQAKHIVITGGEPCIYDLTELTQAFAAIGCQCQIETS 119 Query: 120 GTIEP-PQGIDWICVSPKAG-------CDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171 GT E W+ VSPK D ++ E+K P + + R Sbjct: 120 GTYEILATPTTWVTVSPKVAMKGKLPILDSALQRANEIK--HPVATEKDIDNLDELLVRA 177 Query: 172 S--------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 S LQP+ T L I C WRLS+QTHK++ I Sbjct: 178 SVDAKTVIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 221 >gi|77460620|ref|YP_350127.1| radical SAM family protein [Pseudomonas fluorescens Pf0-1] gi|77384623|gb|ABA76136.1| putative radical SAM-superfamily protein [Pseudomonas fluorescens Pf0-1] Length = 215 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 105/228 (46%), Gaps = 51/228 (22%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + L D++E+ + G + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -IRTLDDILEQ--VAGFRP-RYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQE--------LKLVFPQVNV-----SPENY------ 163 +D V P+ DLK +E + L+ P V S E+Y Sbjct: 103 --ALDISAVDPRVSRVVDLKTPDSKEAHRNRYENIDLLTPNDQVKFVICSREDYDWAVSK 160 Query: 164 -IGFDFERFSLQPMDGPFLEE--NTNLAISYCFQNPKWRLSVQTHKFI 208 I + ER + + + P + +LA N RL +Q HK++ Sbjct: 161 LIQYGLERRAGEVLFSPSHHDLNARDLADWVVADNLPVRLQLQLHKYL 208 >gi|310825117|ref|YP_003957475.1| radical sam domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309398189|gb|ADO75648.1| Radical SAM domain protein [Stigmatella aurantiaca DW4/3-1] Length = 230 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 +KEI+L++QGE HAG + F R +GC+L +C +CD++F GT+ Sbjct: 21 VKEIYLSVQGESSHAGLLCAFVRLTGCHL-----------RCTYCDSEFAFRGGTRMPNA 69 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 V + + + +TGGEPLLQ V PL++AL G + +ET+G I+ Sbjct: 70 QVVEQVKALRTPMVE---------ITGGEPLLQPGVYPLMEALLAEGLTVLLETSGAID 119 >gi|154149121|ref|YP_001405929.1| radical SAM domain-containing protein [Campylobacter hominis ATCC BAA-381] gi|153805130|gb|ABS52137.1| radical SAM domain protein [Campylobacter hominis ATCC BAA-381] Length = 247 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 16/132 (12%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-----CRFCDTDFVGI 57 + S+ E F ++QGEG AGR+AVF RF+GCNL L + R CDT I Sbjct: 1 MLSLVESFASIQGEGKFAGRLAVFFRFAGCNLNCAGFNCELKSPKTGEILRGCDT----I 56 Query: 58 QGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL----IQALNKR 110 + K ++ +++ + L+++ + V+TGGEPLL PL I + KR Sbjct: 57 RAVKTAHFDYEKISTVSQLLDKIGTNFKNSLPIIVITGGEPLLNYANPLFYEFIDEILKR 116 Query: 111 GFEIAVETNGTI 122 FE+ ETNGTI Sbjct: 117 NFEVHFETNGTI 128 >gi|323491404|ref|ZP_08096589.1| organic radical activating enzyme [Vibrio brasiliensis LMG 20546] gi|323314530|gb|EGA67609.1| organic radical activating enzyme [Vibrio brasiliensis LMG 20546] Length = 222 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 21/225 (9%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59 +Y I E+F T+QGEG G +VF R C + W +Q + C D + + Sbjct: 1 MYKINEMFQTIQGEGVFTGVPSVFVRLQECPVGCAWCDTKQTWDATPQDECSLDEILAKK 60 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + D++ E G R+ V+TGGEP + PL A G + +ET+ Sbjct: 61 EDSPAWCSVSAQDIVNEYQKQG-YTARHIVITGGEPCIYDLRPLTAAFEAIGCQCQIETS 119 Query: 120 GTIEPPQGID-WICVSPKAG-------CDLKIKGGQELKL-VFPQVNVSPENYIGFDFE- 169 GT + + W+ VSPK D + E+K V Q ++ + + + Sbjct: 120 GTYQVDASENTWVTVSPKVAMKGKLPVIDSALLRANEIKHPVATQKDIDQLDELLTRAQV 179 Query: 170 ----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ T L I C + WRLS+QTHK++ I Sbjct: 180 PQSTTIALQPISQK--PRATQLCIDTCVER-NWRLSIQTHKYLSI 221 >gi|51948767|gb|AAU14304.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948815|gb|AAU14328.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948877|gb|AAU14359.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948903|gb|AAU14372.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948907|gb|AAU14374.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] Length = 129 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 ++ L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -INTLDDIMGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 +D V P+ DLK G +E+ Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127 >gi|70607340|ref|YP_256210.1| hypothetical protein Saci_1604 [Sulfolobus acidocaldarius DSM 639] gi|68567988|gb|AAY80917.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639] Length = 211 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 102/229 (44%), Gaps = 41/229 (17%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF ++QGEG G + F R +GC++ +C +CDT + Sbjct: 3 YWIIEIFTSIQGEGEVIGTPSNFVRLAGCHM-----------RCIWCDTKY------SWH 45 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 +Y+ +L+ I+E + +TGGEPLLQ +PL + L K I VET+GTI+ Sbjct: 46 KYDGKELS--IQEIISKINVSVKTTTITGGEPLLQDIIPLAEELKKLEQRIVVETSGTIK 103 Query: 124 PPQG----IDWICVSPK---AGCDLKIK-GGQELKLVFPQVNVSPENYI----------G 165 P Q +D VSPK AG LK + + V V+P+ I Sbjct: 104 PNQKLMELVDVFSVSPKLSNAGYRLKYNFKDDDWATYYKFVIVNPKTDIPEVIKFVEENR 163 Query: 166 FDFERFSLQPMDG---PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 D + LQP DG ++ LA S ++R+ Q H+ I R Sbjct: 164 IDHRKVLLQP-DGRRNDYVNALKELADSVMEFGVQFRVLPQLHRIISYR 211 >gi|153825305|ref|ZP_01977972.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|183179363|ref|ZP_02957574.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|149741133|gb|EDM55192.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|183012774|gb|EDT88074.1| conserved hypothetical protein [Vibrio cholerae MZO-3] Length = 245 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 95/232 (40%), Gaps = 35/232 (15%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59 LY I E+F T+QGEG G AVF R GC + W +Q + + ++ Sbjct: 24 LYRINEMFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLDSDQTSFSQILLKT 83 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + + ++++ G + ++ V+TGGEP + L QA G +ET+ Sbjct: 84 SDAPTWCQASAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQIETS 142 Query: 120 GTIEPPQGID-WICVSPKAG-------CDLKIKGGQELKL-------------VFPQVNV 158 GT E + W+ VSPK D ++ E+K + + V Sbjct: 143 GTYEVRATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLARAQV 202 Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 S + I LQP+ T L I C WRLS+QTHK++ I Sbjct: 203 SAQTAIA-------LQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244 >gi|331016448|gb|EGH96504.1| radical SAM domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 215 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + L D+I + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -IQTLDDIIGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 +D V P+ DLK G +E+ Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127 >gi|146295178|ref|YP_001178949.1| radical SAM domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145408754|gb|ABP65758.1| Radical SAM domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 217 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 19/121 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + E F++++GEG +G A+F RF+GCNL C +CDT + T+ Sbjct: 6 FKVVEKFVSIEGEGIRSGFPAIFLRFAGCNL-----------NCSYCDTRY----ATQNP 50 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 Y L ++E G K LTGGEPL+Q + LI +L K GFE+ +ETNG++ Sbjct: 51 DYEEITLDQILEYVNSIGFKR---VTLTGGEPLIQPHIHDLIDSLIKEGFEVNIETNGSV 107 Query: 123 E 123 + Sbjct: 108 D 108 >gi|300869302|ref|ZP_07113893.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] gi|300332679|emb|CBN59091.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] Length = 210 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 105/223 (47%), Gaps = 41/223 (18%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I E F T+QGEG +G + F R +GC C +CDT + ++GG+ Sbjct: 12 IHETFQSTVQGEGYWSGTLVDFIRLAGC-----------PVHCPWCDTGY-----SEGGK 55 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT-I 122 + ++E + E + V++GGEP + ++PL +++L + G ++++ET+G+ Sbjct: 56 DLPNVQRSIVE---LLTELKSPRVVISGGEPFIHKNLPLLVESLLEVGKQVSIETSGSHW 112 Query: 123 EPPQGIDWICVSPKAGCDLKI-------KGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175 + G WI +SPK + K E+KLV +S + F + P Sbjct: 113 QEVAGETWITLSPKEHVNPKYPVQEKFWSRANEIKLV-----ISTGEEVNFYRDGLVSNP 167 Query: 176 MDGPFLEENTN-------LAISYCFQNPKWRLSVQTHKFIGIR 211 FL+ + + + QNP +RLS+QTHK IG++ Sbjct: 168 NIPVFLQPEWSDRFRAIPIILQLLQQNPGYRLSLQTHKLIGVQ 210 >gi|284048974|ref|YP_003399313.1| Radical SAM domain protein [Acidaminococcus fermentans DSM 20731] gi|283953195|gb|ADB47998.1| Radical SAM domain protein [Acidaminococcus fermentans DSM 20731] Length = 218 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 31/151 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + E+F +++GEG G +AVF RF+GCNL +C +CDT + Sbjct: 6 FPVVELFDSIEGEGKRTGAMAVFVRFAGCNL-----------RCSYCDTGY--------A 46 Query: 64 RYNVDQLADLIEEQWITGEKEGRY----CVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 D L EE + + RY LTGGEPLLQ L + L++ G+E+ +ETN Sbjct: 47 LEPADAREHLTEEDLMGRIR--RYPWKKVTLTGGEPLLQPLDSLCRTLSREGYEVNIETN 104 Query: 120 GTI----EPPQGIDWI--CVSPKAGCDLKIK 144 G + E P+G+ + SP +G +++ Sbjct: 105 GAVPLLEERPRGLFYTMDVKSPSSGMRGRMR 135 >gi|51948881|gb|AAU14361.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] Length = 129 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 V L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -VQTLDDIMGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 +D V P+ DLK G +E+ Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127 >gi|325969441|ref|YP_004245633.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28] gi|323708644|gb|ADY02131.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28] Length = 218 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 94/194 (48%), Gaps = 36/194 (18%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E+F + QGEG HAG AVF R + CNL +C +CDT + + G G Sbjct: 3 VVEVFRSWQGEGPHAGEEAVFLRLARCNL-----------RCVWCDTKYSWLGGVSMGID 51 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTIE 123 V LIE G E ++ V+TGGEPLL + L+ + RG+ + VETNGT+ Sbjct: 52 AV--FRRLIE----VGGDEIKHLVITGGEPLLWWRELRQLLIIVKGRGWFVEVETNGTLR 105 Query: 124 PPQGIDWI---CVSPK---AGCDLKIKGGQEL--------KLVFPQVNVSPE--NYIGFD 167 P + +D++ VS K +G L+ + + K VF V PE N + + Sbjct: 106 PGELLDYVDEFNVSSKLSNSGILLRHRVNESALRDFVSSGKAVFKFVVDKPEDVNEVLWF 165 Query: 168 FERFSLQPMDGPFL 181 ERF + P D +L Sbjct: 166 IERFRM-PRDRIYL 178 >gi|305663006|ref|YP_003859294.1| coenzyme PQQ synthesis protein, conjectural [Ignisphaera aggregans DSM 17230] gi|304377575|gb|ADM27414.1| coenzyme PQQ synthesis protein, conjectural [Ignisphaera aggregans DSM 17230] Length = 219 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 96/214 (44%), Gaps = 42/214 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF ++QGEG GR AVF R GCNL + CDT + + G Sbjct: 8 VSEIFYSIQGEGPFIGRPAVFIRLQGCNLRCTKNSVGWD-----CDTQY-AWDSSGGMEI 61 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123 ++D++ D++ + + R+ V+TGGEP++Q + LI+ L+ G+ I +ETNGTI Sbjct: 62 SIDRVVDIVRQY------QCRHIVITGGEPMIQQREVIELIKRLD--GYAIEIETNGTI- 112 Query: 124 PPQGIDW------ICVSPK------------AGCDLKIKGGQELKLVFPQVNVSPENYIG 165 P D+ + VSPK A C LK E LVF V G Sbjct: 113 -PLDPDFPVEKVRLNVSPKPHAPIRPEYIRYASC-LKFVVASEKDLVFVDSFV---KIYG 167 Query: 166 FDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199 + R L P E N N I C++ K R Sbjct: 168 VEPSRIWLMPASRNVDEHNRN--IRLCWEYAKLR 199 >gi|94676807|ref|YP_588675.1| hypothetical protein BCI_0220 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219957|gb|ABF14116.1| conserved hypothetical protein [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 223 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 100/243 (41%), Gaps = 59/243 (24%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-------- 55 Y I I TLQGEG +G A+F R GC C +CDT + Sbjct: 3 YPINSICQTLQGEGYFSGIPAIFIRLQGC-----------MVGCNWCDTKYTWHKNKIEQ 51 Query: 56 GIQG---TKGGRYNV-------DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 GI K +V D LA ++++ WI ++ V+TGGEP + +PL Sbjct: 52 GIAKDIMLKKANSSVWSNLSEEDILALIVQQSWI-----AKHVVITGGEPCMYDLLPLTY 106 Query: 106 ALNKRGFEIAVETNGTIEPPQGID-----WICVSPKAG--CDLKIKG-----GQELKLVF 153 L + F +ET+GT Q I W+ VSPK D++I E+K V Sbjct: 107 LLEQYKFSCQIETSGT----QSIKCTSNTWVTVSPKINKHYDVQILAQALSRSNEIKHVV 162 Query: 154 PQ---VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207 + + E + + LQP+ L T L I C WRLS+Q HK+ Sbjct: 163 SRQRDIKYLDELLLTLKDSKQRVICLQPLSQKKLA--TKLCIDTCIMR-NWRLSMQIHKY 219 Query: 208 IGI 210 + I Sbjct: 220 LNI 222 >gi|153212696|ref|ZP_01948353.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124116346|gb|EAY35166.1| conserved hypothetical protein [Vibrio cholerae 1587] Length = 245 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59 LY I E+F T+QGEG G AVF R GC + W +Q + + ++ Sbjct: 24 LYRINEMFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLDSDQTSFSQILLKT 83 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + + ++++ G + ++ V+TGGEP + L QA G +ET+ Sbjct: 84 SDAPTWCQASAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQIETS 142 Query: 120 GTIEPPQGID-WICVSPKAG-------CDLKIKGGQELKL-------------VFPQVNV 158 GT E + W+ VSPK D ++ E+K + + V Sbjct: 143 GTYEVYATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLARAQV 202 Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 S + I +LQP+ T L I C WRLS+QTHK++ I Sbjct: 203 SAQTAI-------ALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244 >gi|312792432|ref|YP_004025355.1| Radical SAM domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179572|gb|ADQ39742.1| Radical SAM domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 225 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 19/120 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 +++ E F++++GEG +G AVF RF+GCNL C +CDT++ + K Sbjct: 14 FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------SCSWCDTNY-ATENPKYE 61 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 + ++D L I I + LTGGEPL+Q + LI L GFE+ +ETNG++ Sbjct: 62 QIDIDTLLSFIASTGI------KRVTLTGGEPLIQPYIYILIDRLIYEGFEVNIETNGSV 115 >gi|261417330|ref|YP_003251013.1| Radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373786|gb|ACX76531.1| Radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325710|gb|ADL24911.1| radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 224 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 24/146 (16%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 EIF +++GEG G+ AVF R GCNL +C +CD+ + ++G + +V Sbjct: 5 EIFKSIEGEGIRMGQAAVFVRLHGCNL-----------RCSYCDSMY-AVEGPDFKQMSV 52 Query: 68 DQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI--- 122 ++ +E + + G CV LTGGEPL+ V L+ A + GFE+ +ETNGT+ Sbjct: 53 GEVLAAVE---MYRNESGVKCVTLTGGEPLIHEGVGELLTAFSDAGFEVNIETNGTVPCK 109 Query: 123 -EPP---QGIDWICVSPKAGCDLKIK 144 + P +DW C S +K++ Sbjct: 110 WQLPGLFYTMDWKCKSSGMSARMKME 135 >gi|121587998|ref|ZP_01677750.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|153828785|ref|ZP_01981452.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|229515737|ref|ZP_04405196.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae TMA 21] gi|229521471|ref|ZP_04410890.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae TM 11079-80] gi|229529559|ref|ZP_04418949.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae 12129(1)] gi|121547739|gb|EAX57830.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|148875738|gb|EDL73873.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|229333333|gb|EEN98819.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae 12129(1)] gi|229341569|gb|EEO06572.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae TM 11079-80] gi|229347506|gb|EEO12466.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae TMA 21] Length = 245 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 95/232 (40%), Gaps = 35/232 (15%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59 LY I E+F T+QGEG G AVF R GC + W +Q + + ++ Sbjct: 24 LYRINEMFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLDSDQTSFSQILLKT 83 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + + ++++ G + ++ V+TGGEP + L QA G +ET+ Sbjct: 84 SDAPTWCQASAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQIETS 142 Query: 120 GTIEPPQGID-WICVSPKAG-------CDLKIKGGQELKL-------------VFPQVNV 158 GT E + W+ VSPK D ++ E+K + + V Sbjct: 143 GTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLARAQV 202 Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 S + I LQP+ T L I C WRLS+QTHK++ I Sbjct: 203 SAQTAIA-------LQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244 >gi|268609642|ref|ZP_06143369.1| MoaA family Fe-S oxidoreductase [Ruminococcus flavefaciens FD-1] Length = 225 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 16/124 (12%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + + E F+++ GEG AG +A+F RF+GCNL +C +CDT + + Sbjct: 1 MGTFRLAEHFVSINGEGRLAGELALFLRFTGCNL-----------RCDWCDTMWANEKDA 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEG-RYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 N LA + ++ + E+ G R LTGGEPLLQ D+P L + G I +ET Sbjct: 50 PYTLMNTSSLAKIAQQAY---EEYGVRNVTLTGGEPLLQEDLPELCGRIAGLGLNIEIET 106 Query: 119 NGTI 122 NG + Sbjct: 107 NGAV 110 >gi|237800229|ref|ZP_04588690.1| radical SAM domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806417|ref|ZP_04593121.1| radical SAM domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023086|gb|EGI03143.1| radical SAM domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027530|gb|EGI07585.1| radical SAM domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 215 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 29/148 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -IQTLDDIVGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150 +D V P+ DLK G +E+ Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEVS 128 >gi|51948725|gb|AAU14283.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948727|gb|AAU14284.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948729|gb|AAU14285.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948731|gb|AAU14286.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948735|gb|AAU14288.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948777|gb|AAU14309.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948779|gb|AAU14310.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948781|gb|AAU14311.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948785|gb|AAU14313.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948787|gb|AAU14314.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948789|gb|AAU14315.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948803|gb|AAU14322.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948807|gb|AAU14324.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948809|gb|AAU14325.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948821|gb|AAU14331.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948823|gb|AAU14332.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948827|gb|AAU14334.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948843|gb|AAU14342.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948849|gb|AAU14345.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948869|gb|AAU14355.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948879|gb|AAU14360.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948885|gb|AAU14363.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948901|gb|AAU14371.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948909|gb|AAU14375.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] Length = 129 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -IHTLDDIMGQ---VATYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 +D V P+ DLK G +E+ Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127 >gi|28871114|ref|NP_793733.1| radical SAM domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28854364|gb|AAO57428.1| radical SAM domain protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 215 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -IQTLDDIVGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 +D V P+ DLK G +E+ Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127 >gi|119493534|ref|ZP_01624200.1| hypothetical protein L8106_18202 [Lyngbya sp. PCC 8106] gi|119452651|gb|EAW33832.1| hypothetical protein L8106_18202 [Lyngbya sp. PCC 8106] Length = 204 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 96/227 (42%), Gaps = 41/227 (18%) Query: 1 MKLYSIKEIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M +I E F T+QGEG AG F R +GC QC +CDT + G Sbjct: 1 MNEIAIHETFQNTIQGEGFWAGTPVDFIRLAGC-----------PVQCHYCDTGYAN--G 47 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 +G NV LI E V++GGEP + +P L++ + + +ET Sbjct: 48 GEGLPRNVRSFEALI------AELRSPKVVISGGEPFIYPQLPDLVKCIEATNRTVFIET 101 Query: 119 NGTI-EPPQGIDWICVSPKAG-------CDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 +G +P WI +SPK D + E+KLV + + + + + Sbjct: 102 SGCFWQPISSSVWITLSPKEHLNPHYPVVDQMWERASEIKLV-----IETGSELKYYDQY 156 Query: 171 FSLQPMDGPFLEE-------NTNLAISYCFQNPKWRLSVQTHKFIGI 210 SL+P FL+ L + Q P +RLS+Q HK++G+ Sbjct: 157 LSLKPQIPVFLQPEWTQRDYTLPLVLELLQQYPDYRLSLQLHKYVGV 203 >gi|51948733|gb|AAU14287.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948737|gb|AAU14289.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948765|gb|AAU14303.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948771|gb|AAU14306.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948783|gb|AAU14312.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948793|gb|AAU14317.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948795|gb|AAU14318.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948797|gb|AAU14319.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948799|gb|AAU14320.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948801|gb|AAU14321.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948811|gb|AAU14326.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948813|gb|AAU14327.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948817|gb|AAU14329.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948819|gb|AAU14330.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948825|gb|AAU14333.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948829|gb|AAU14335.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948835|gb|AAU14338.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948837|gb|AAU14339.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948841|gb|AAU14341.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948857|gb|AAU14349.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948859|gb|AAU14350.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948861|gb|AAU14351.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948863|gb|AAU14352.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948865|gb|AAU14353.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948867|gb|AAU14354.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948873|gb|AAU14357.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948887|gb|AAU14364.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948889|gb|AAU14365.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948891|gb|AAU14366.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948893|gb|AAU14367.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948895|gb|AAU14368.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948897|gb|AAU14369.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948905|gb|AAU14373.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] Length = 129 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -IHTLDDIMGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 +D V P+ DLK G +E+ Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127 >gi|330872644|gb|EGH06793.1| radical SAM domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330964833|gb|EGH65093.1| radical SAM domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 215 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -IQTLDDIVGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 +D V P+ DLK G +E+ Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127 >gi|51948739|gb|AAU14290.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948741|gb|AAU14291.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948743|gb|AAU14292.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948745|gb|AAU14293.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948747|gb|AAU14294.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948749|gb|AAU14295.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948751|gb|AAU14296.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948753|gb|AAU14297.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948755|gb|AAU14298.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948757|gb|AAU14299.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948759|gb|AAU14300.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948761|gb|AAU14301.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948769|gb|AAU14305.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948773|gb|AAU14307.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948775|gb|AAU14308.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948791|gb|AAU14316.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948831|gb|AAU14336.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948833|gb|AAU14337.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948839|gb|AAU14340.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948845|gb|AAU14343.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948847|gb|AAU14344.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948851|gb|AAU14346.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948853|gb|AAU14347.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948855|gb|AAU14348.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948871|gb|AAU14356.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948875|gb|AAU14358.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948883|gb|AAU14362.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] Length = 129 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -IQTLDDIMGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 +D V P+ DLK G +E+ Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127 >gi|163815376|ref|ZP_02206751.1| hypothetical protein COPEUT_01541 [Coprococcus eutactus ATCC 27759] gi|158449350|gb|EDP26345.1| hypothetical protein COPEUT_01541 [Coprococcus eutactus ATCC 27759] Length = 222 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 19/125 (15%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y + E F+++ GE AG +AVF RF+GCNL C +CDT + G Sbjct: 1 MSTYRVVERFISINGEAARAGELAVFIRFAGCNL-----------NCGYCDTKWANEPGV 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118 D+L D + E + LTGGEPL+Q D+ L+ + + +ET Sbjct: 50 DYQELTEDELVDYVRRT------EVKNVTLTGGEPLIQKDIDKLLLAFALEDDIRVEIET 103 Query: 119 NGTIE 123 NG+++ Sbjct: 104 NGSVD 108 >gi|149910796|ref|ZP_01899430.1| radical activating enzyme [Moritella sp. PE36] gi|149806130|gb|EDM66110.1| radical activating enzyme [Moritella sp. PE36] Length = 222 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 104/237 (43%), Gaps = 48/237 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------F 54 Y + EIF T+QGEG G +F R GC++ C +CDT Sbjct: 3 YPVNEIFETVQGEGHFTGYPVIFIRLQGCDV-----------GCSWCDTKQTWTVDPEMQ 51 Query: 55 VGIQGTKGGRYNVDQLADLIEEQWITG-EKEG---RYCVLTGGEPLLQVDVPLIQALNKR 110 V Q + A+ +++IT +K G ++ V++GGEP V L L + Sbjct: 52 VSQQTVNKACDDKPHWANFTAQEFITMIQKNGFVAKHIVISGGEPCQYDLVELTSELEQA 111 Query: 111 GFEIAVETNGTIEP-PQGIDWICVSPKAGCDLKIKG-----------GQELKLVFP-QVN 157 G+ +ET+GT E W+ VSPK +++KG E+K V + + Sbjct: 112 GYFCQIETSGTSEVRATDSTWVTVSPK----IQMKGQLPVLQSALRRANEIKHVIAMEKH 167 Query: 158 VSPENYIGFDFER----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + D + LQP+ + T+LAI C + W+LSVQ HK+I I Sbjct: 168 IEELDALIADIDTSDKIMCLQPISQQ--KRATDLAIKLCIER-NWKLSVQMHKYIFI 221 >gi|328468975|gb|EGF39935.1| hypothetical protein VP10329_15155 [Vibrio parahaemolyticus 10329] Length = 226 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 91/242 (37%), Gaps = 55/242 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 LY + E+F T+QGEG G AVF R C + C +CDT K Sbjct: 5 LYKLNEMFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWDAEEKD 53 Query: 63 GRYNVDQLADLIEE-QWITGEKE------------GRYCVLTGGEPLLQVDVPLIQALNK 109 R D L + W T E ++ V+TGGEP + PL +A Sbjct: 54 QRPIGDILVKTEDSPTWCTASAEDIVEQYKQQGFNAKHIVITGGEPCIYDLRPLSKAFED 113 Query: 110 RGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKI--------------------KGGQE 148 G + +ET+GT E W+ VSPK K+ K Sbjct: 114 MGCQCQIETSGTSEVVTSEKTWVTVSPKVAMKGKLPVLKSALERANEIKHPVGTQKDIDH 173 Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 L + ++ E I +LQP+ T L I C WRLS+QTHK++ Sbjct: 174 LDELLANADIKTETVI-------ALQPISQK--PRATQLCIETCISR-NWRLSIQTHKYL 223 Query: 209 GI 210 I Sbjct: 224 SI 225 >gi|213969194|ref|ZP_03397333.1| radical SAM domain protein [Pseudomonas syringae pv. tomato T1] gi|301384811|ref|ZP_07233229.1| radical SAM domain protein [Pseudomonas syringae pv. tomato Max13] gi|302063535|ref|ZP_07255076.1| radical SAM domain protein [Pseudomonas syringae pv. tomato K40] gi|302130601|ref|ZP_07256591.1| radical SAM domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926192|gb|EEB59748.1| radical SAM domain protein [Pseudomonas syringae pv. tomato T1] Length = 215 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTAGLPTVFIRLTGCPL-----------RCQYCDSAYAFSGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -IQTLDDIVGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 +D V P+ DLK G +E+ Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127 >gi|229523533|ref|ZP_04412938.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae bv. albensis VL426] gi|254225344|ref|ZP_04918956.1| conserved hypothetical protein [Vibrio cholerae V51] gi|125622185|gb|EAZ50507.1| conserved hypothetical protein [Vibrio cholerae V51] gi|229337114|gb|EEO02131.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae bv. albensis VL426] Length = 245 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59 LY I E+F T+QGEG G AVF R GC + W +Q + + ++ Sbjct: 24 LYRINEMFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLDSDQTSFSQILLKT 83 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + + ++++ G + ++ V+TGGEP + L QA G +ET+ Sbjct: 84 SDAPTWCQATAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQIETS 142 Query: 120 GTIEPPQGID-WICVSPKAG-------CDLKIKGGQELKL-------------VFPQVNV 158 GT E + W+ VSPK D ++ E+K + + V Sbjct: 143 GTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLARAQV 202 Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 S + I +LQP+ T L I C WRLS+QTHK++ I Sbjct: 203 SAQTAI-------ALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244 >gi|302870906|ref|YP_003839542.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47] gi|302573765|gb|ADL41556.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47] Length = 224 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 28/158 (17%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 +++ E F++++GEG +G AVF RF+GCNL C +CDT + + K Sbjct: 13 FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------SCSWCDTKY-ATENPKYE 60 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 + ++D L + I I + LTGGEPL+Q + LI L GFE+ +ETNG++ Sbjct: 61 QIDIDTLLNFIASTGI------KRVTLTGGEPLIQPYIYILIDRLIYEGFEVNIETNGSV 114 Query: 123 EPPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQVN 157 CV A + K G E +++ +N Sbjct: 115 SIK------CVPRDAIITMDYKCPSSGMEDRMIVDNIN 146 >gi|330950598|gb|EGH50858.1| radical SAM family protein [Pseudomonas syringae Cit 7] Length = 215 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 29/148 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDSGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150 +D V P+ DLK G +E+ Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEVS 128 >gi|121728537|ref|ZP_01681560.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147675014|ref|YP_001216924.1| hypothetical protein VC0395_A0978 [Vibrio cholerae O395] gi|254286183|ref|ZP_04961143.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|121629201|gb|EAX61641.1| conserved hypothetical protein [Vibrio cholerae V52] gi|146316897|gb|ABQ21436.1| conserved hypothetical protein [Vibrio cholerae O395] gi|150423852|gb|EDN15793.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|227013282|gb|ACP09492.1| conserved hypothetical protein [Vibrio cholerae O395] Length = 245 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 97/235 (41%), Gaps = 41/235 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGI 57 LY I E+F T+QGEG G AVF R GC + W +Q + L + T F I Sbjct: 24 LYRINEMFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLDSD----QTSFSQI 79 Query: 58 Q-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 T A + +++ + ++ V+TGGEP + L QA G + Sbjct: 80 LLKTNDAPTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQI 139 Query: 117 ETNGTIEPPQGID-WICVSPKAG-------CDLKIKGGQELKL-------------VFPQ 155 ET+GT E + W+ VSPK D ++ E+K + + Sbjct: 140 ETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLAR 199 Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 VS + I +LQP+ T L I C WRLS+QTHK++ I Sbjct: 200 AQVSAQTAI-------ALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244 >gi|51948763|gb|AAU14302.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] Length = 129 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -IQTLDDIMGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 +D V P+ DLK G +E+ Sbjct: 103 --ALDISAVDPRVSRVIDLKTPGSKEV 127 >gi|291547693|emb|CBL20801.1| Organic radical activating enzymes [Ruminococcus sp. SR1/5] Length = 149 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 19/125 (15%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y + E F+++ GEG AG +A F RF GCNL QC +CDT + G Sbjct: 1 MSTYQVVEKFVSINGEGRRAGELAAFIRFKGCNL-----------QCSYCDTSWANEPGC 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQA-LNKRGFEIAVET 118 + R +++ I E TG K LTGGEPLL+ + LI+A L + +ET Sbjct: 50 ESERLTEEEILSWIRE---TGVKN---VTLTGGEPLLRKGMEELIEAILEDPSQRVEIET 103 Query: 119 NGTIE 123 NG+++ Sbjct: 104 NGSVD 108 >gi|254167036|ref|ZP_04873889.1| radical SAM domain protein, putative [Aciduliprofundum boonei T469] gi|197623892|gb|EDY36454.1| radical SAM domain protein, putative [Aciduliprofundum boonei T469] Length = 209 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 29/167 (17%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF ++QGEG + G F R +GCNL +C +CDT++ +G + Sbjct: 2 KVNEIFTSIQGEGIYIGVSMFFVRLTGCNL-----------RCEWCDTEYAFYEGEE--- 47 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 ++D + +EE + ++ +TGGEPLLQ +V LI L ++ ++I +ETNG+I Sbjct: 48 MSIDSIIKKVEESGM------KWVCITGGEPLLQEEVYKLIDILLRKDYKILLETNGSI- 100 Query: 124 PPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQVN-VSPENYIGF 166 ID + L IK E + F +N + P++++ F Sbjct: 101 ---LIDKLPTEENLVISLDIKTPSSKMERAMRFENLNYLGPKDFVKF 144 >gi|153836184|ref|ZP_01988851.1| organic radical activating enzyme [Vibrio parahaemolyticus AQ3810] gi|149750459|gb|EDM61204.1| organic radical activating enzyme [Vibrio parahaemolyticus AQ3810] Length = 226 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 91/242 (37%), Gaps = 55/242 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 LY + E+F T+QGEG G AVF R C + C +CDT K Sbjct: 5 LYKLNEMFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWDAEEKD 53 Query: 63 GRYNVDQLADLIEE-QWITGEKE------------GRYCVLTGGEPLLQVDVPLIQALNK 109 R D L + W T E ++ V+TGGEP + PL +A Sbjct: 54 QRPIGDILVKTEDSPTWCTASAEDIVEQYKQQGFNAKHIVITGGEPCIYDLRPLSKAFED 113 Query: 110 RGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKI--------------------KGGQE 148 G + +ET+GT E W+ VSPK K+ K Sbjct: 114 MGCQCQIETSGTSEVVTSEKTWVTVSPKVAMKGKLPVLRSALERANEIKHPVGTQKDIDH 173 Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 L + ++ E I +LQP+ T L I C WRLS+QTHK++ Sbjct: 174 LDELLANADIKTETVI-------ALQPISQK--PRATQLCIETCIAR-NWRLSIQTHKYL 223 Query: 209 GI 210 I Sbjct: 224 SI 225 >gi|71735883|ref|YP_275904.1| radical SAM domain-containing protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487001|ref|ZP_05641042.1| radical SAM domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298488200|ref|ZP_07006236.1| Queuosine Biosynthesis QueE Radical SAM [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71556436|gb|AAZ35647.1| radical SAM domain protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157258|gb|EFH98342.1| Queuosine Biosynthesis QueE Radical SAM [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323043|gb|EFW79132.1| radical SAM domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320329685|gb|EFW85674.1| radical SAM domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330877970|gb|EGH12119.1| radical SAM domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330892249|gb|EGH24910.1| radical SAM domain-containing protein [Pseudomonas syringae pv. mori str. 301020] gi|330988978|gb|EGH87081.1| radical SAM domain-containing protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009357|gb|EGH89413.1| radical SAM domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 215 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 29/148 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -IQTLDDIVGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150 +D V P+ DLK G +E+ Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEVS 128 >gi|197303437|ref|ZP_03168476.1| hypothetical protein RUMLAC_02159 [Ruminococcus lactaris ATCC 29176] gi|197297435|gb|EDY31996.1| hypothetical protein RUMLAC_02159 [Ruminococcus lactaris ATCC 29176] Length = 221 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 19/120 (15%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F+++ GEG AG +AVF RF GCNL C +CDT + Sbjct: 3 VVEKFISINGEGRRAGELAVFIRFKGCNL-----------NCSYCDTKWANEPACDYEEL 51 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTIE 123 + D + + + E I + LTGGEPLLQ D+ + + LNK + +ETNG ++ Sbjct: 52 SPDDICEYVSETGI------KNVTLTGGEPLLQKDIRSLVEKLLNKSDIRVEIETNGAVD 105 >gi|124486430|ref|YP_001031046.1| hypothetical protein Mlab_1617 [Methanocorpusculum labreanum Z] gi|124363971|gb|ABN07779.1| Radical SAM domain protein [Methanocorpusculum labreanum Z] Length = 202 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 22/119 (18%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F++LQGEG G F R SGCNL +C +CDT++ KG Sbjct: 3 VTETFVSLQGEGERQGMPCFFLRLSGCNL-----------RCAWCDTEY---SFEKGTDR 48 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 +VD+L I + ++ Y +TGGEPLLQ + +PL++ L + +ETNGTI Sbjct: 49 SVDELVKEIADSGLS------YVCVTGGEPLLQKEELIPLLEILAAADIHVDIETNGTI 101 >gi|312623403|ref|YP_004025016.1| Radical SAM domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] gi|312203870|gb|ADQ47197.1| Radical SAM domain protein [Caldicellulosiruptor kronotskyensis 2002] Length = 225 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 19/120 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 +++ E F++++GEG +G AVF RF+GCNL +C +CDT + + + Sbjct: 14 FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------RCSWCDTKYAN-ENPEYE 61 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 ++D L + I I + LTGGEPL+Q + LI L GFE+ +ETNG++ Sbjct: 62 EIDIDNLMNFITSTGI------KRVTLTGGEPLIQPYIYLLIDRLISEGFEVNIETNGSV 115 >gi|289626505|ref|ZP_06459459.1| radical SAM domain-containing protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650951|ref|ZP_06482294.1| radical SAM domain-containing protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330868621|gb|EGH03330.1| radical SAM domain-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 215 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 29/148 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -IHTLDDIVGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150 +D V P+ DLK G +E+ Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEVS 128 >gi|226354845|ref|YP_002784585.1| organic radical activating enzyme [Deinococcus deserti VCD115] gi|226316835|gb|ACO44831.1| putative Organic radical activating enzyme [Deinococcus deserti VCD115] Length = 230 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 96/221 (43%), Gaps = 35/221 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + E F T QGEG H GR A F R GC +C +CD+ GT Sbjct: 3 YPVFERFYTWQGEGVHLGRAAYFVRLYGC-----------PQECPWCDS-----AGTWHK 46 Query: 64 RYNVDQLADLIEEQWITG-----EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 Y + L+ + I EG V+TGGEP+L PL++AL+ G + +ET Sbjct: 47 DYRPAGV-QLMTPEAIAACVAQESPEGAVVVITGGEPILFDLTPLVEALHGLGRRVHLET 105 Query: 119 NGTIEPPQG-IDWICVSPKAGCDLK----IKGGQELKLVFPQVNVSPENYIGFDFER--- 170 +G I P +G IDW+ +SPK L ++ E+K++ + + D + Sbjct: 106 SG-IAPLRGAIDWVTLSPKPFGTLPLPSVVQQAHEVKIIVHDTSDIRDGLATLDGLKDDA 164 Query: 171 -FSLQPMDGPFLEENTNL--AISYCFQ-NPKWRLSVQTHKF 207 L P E + + AI+ + NP+ R Q HK Sbjct: 165 VIWLHPEWSKARERDAAVLNAITEAVKANPRLRAGYQMHKL 205 >gi|186474664|ref|YP_001863635.1| hypothetical protein Bphy_7690 [Burkholderia phymatum STM815] gi|184198623|gb|ACC76585.1| conserved hypothetical protein [Burkholderia phymatum STM815] Length = 235 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 100/248 (40%), Gaps = 68/248 (27%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54 Y + EIF +LQGEG G +VF R GC + C +CD+ Sbjct: 16 YPVNEIFESLQGEGNFTGTPSVFVRLQGCPV-----------GCAWCDSKHTWQVMPERE 64 Query: 55 --VGIQGTKGGRY-------NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 VG G K GR +V LA+++ + + V+TGGEP + PLI Sbjct: 65 ISVGAMGEKTGRPCDSYAWCDVPTLANIVR------AADAEHVVITGGEPCMYDLRPLIA 118 Query: 106 ALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAG-------CDLKIKGGQELKLVFPQVN 157 L + VET+GT P ++ SPK G D ++ E+K +P Sbjct: 119 KLQAWHHRVQVETSGTYVPLVTPSTFVTTSPKYGMPSGRPVLDEALERANEIK--YP--- 173 Query: 158 VSPENYIGFDFERFS-----------LQPMDGPFLEENTNLAISYCFQNPK---WRLSVQ 203 V + I ER LQP+ ++ A C + WR+S+Q Sbjct: 174 VGKQRDIDIVLERLDPIQRARGTPIWLQPLS------LSSRATGICMKAAHRYGWRVSLQ 227 Query: 204 THKFIGIR 211 T+KFI IR Sbjct: 228 TNKFINIR 235 >gi|70732080|ref|YP_261836.1| radical activating enzyme [Pseudomonas fluorescens Pf-5] gi|68346379|gb|AAY93985.1| radical activating enzyme [Pseudomonas fluorescens Pf-5] Length = 215 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 75/146 (51%), Gaps = 29/146 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F +LQGE AG VF R +GC L +C++CD+ + G++ Sbjct: 7 ITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGSQR--- 52 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 L L+E+ + G + RY +TGGEPL Q + +PL+Q L G+E+++ET+G Sbjct: 53 ---TLDSLLEQ--VAGFRP-RYVCVTGGEPLAQPNAIPLLQHLCDAGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQE 148 +D V P+ DLK G +E Sbjct: 103 --ALDISAVDPRVSRILDLKTPGSKE 126 >gi|312128624|ref|YP_003993498.1| Radical SAM domain-containing protein [Caldicellulosiruptor hydrothermalis 108] gi|311778643|gb|ADQ08129.1| Radical SAM domain protein [Caldicellulosiruptor hydrothermalis 108] Length = 225 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 19/120 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 +++ E F++++GEG +G AVF RF+GCNL +C +CDT + + + Sbjct: 14 FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------RCSWCDTKYAN-ENPEYE 61 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 ++D L + I I + LTGGEPL+Q + LI L GFE+ +ETNG++ Sbjct: 62 EIDIDNLMNFITSTGI------KRVTLTGGEPLIQPYIYLLIDRLISEGFEVNIETNGSV 115 >gi|330975318|gb|EGH75384.1| radical SAM family protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 215 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 29/148 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150 +D V P+ DLK G +E+ Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEVS 128 >gi|330936708|gb|EGH40896.1| radical SAM family protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 215 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 29/148 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150 +D V P+ DLK G +E+ Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEVS 128 >gi|213963236|ref|ZP_03391493.1| radical SAM domain protein [Capnocytophaga sputigena Capno] gi|213954098|gb|EEB65423.1| radical SAM domain protein [Capnocytophaga sputigena Capno] Length = 210 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 95/231 (41%), Gaps = 55/231 (23%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 ++ + E F +LQGEG + G A F R GC++ C +CD ++ + Sbjct: 14 EILPLMEAFYSLQGEGFYKGTAAYFIRLGGCDV-----------GCHWCD-----VKESW 57 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + D I + K ++TGGEPL+ L Q L G +ET+G Sbjct: 58 AAEAHPLVPVDTIVTDALAHSKT---MIITGGEPLMWNLDLLTQKLRAAGARTHIETSGA 114 Query: 122 IEPPQGIDWICVSPKAGCDLKIK--------GGQELKLVFPQVN-----------VSPEN 162 DWIC+SPK KIK ELK+V N VSP+ Sbjct: 115 HPLSGTFDWICLSPK-----KIKRPVGDVLQKANELKMVIYNNNDFLFAEEMAAQVSPDC 169 Query: 163 YIGFDFERFSLQPMDGPFLEENTNLA--ISYCFQNPKWRLSVQTHKFIGIR 211 + LQP + + N + + Y +P+W+ S+Q HK++ IR Sbjct: 170 LL-------YLQP---EWSKRNKVIPKIVDYVMAHPQWKASLQMHKYLDIR 210 >gi|297578950|ref|ZP_06940878.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297536544|gb|EFH75377.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 245 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 95/232 (40%), Gaps = 35/232 (15%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59 LY I E+F T+QGEG G AVF R GC + W +Q + + ++ Sbjct: 24 LYRINEMFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLDSDQTSFSQILLKT 83 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + + ++++ G + ++ V+TGGEP + L QA G +ET+ Sbjct: 84 SDAPTWCQATAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFEAIGCRCQIETS 142 Query: 120 GTIEP-PQGIDWICVSPKAG-------CDLKIKGGQELKL-------------VFPQVNV 158 GT E W+ VSPK D ++ E+K + + V Sbjct: 143 GTYEVCATDNTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLARAQV 202 Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 S + I +LQP+ T L I C WRLS+QTHK++ I Sbjct: 203 SAQTAI-------ALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244 >gi|254167785|ref|ZP_04874635.1| radical SAM domain protein [Aciduliprofundum boonei T469] gi|289597123|ref|YP_003483819.1| Radical SAM domain protein [Aciduliprofundum boonei T469] gi|197623313|gb|EDY35878.1| radical SAM domain protein [Aciduliprofundum boonei T469] gi|289534910|gb|ADD09257.1| Radical SAM domain protein [Aciduliprofundum boonei T469] Length = 209 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 29/167 (17%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + E+F ++QGEG + G F R +GCNL +C +CDT++ +G + Sbjct: 2 KVNEMFTSIQGEGIYIGVPMFFVRLTGCNL-----------RCEWCDTEYAFYEGEE--- 47 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 ++D + +EE + ++ +TGGEPLLQ +V LI L ++ ++I VETNG+I Sbjct: 48 MSIDSIIKKVEESGM------KWVCITGGEPLLQEEVYKLIDILLRKDYKILVETNGSI- 100 Query: 124 PPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQVN-VSPENYIGF 166 ID + L IK E + F +N + P++++ F Sbjct: 101 ---LIDKLPTEENLVISLDIKTPSSKMERAMRFENLNYLGPKDFVKF 144 >gi|312134204|ref|YP_004001542.1| Radical SAM domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311774255|gb|ADQ03742.1| Radical SAM domain protein [Caldicellulosiruptor owensensis OL] Length = 224 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 19/120 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 +++ E F++++GEG +G AVF RF+GCNL C +CDT + + K Sbjct: 13 FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------SCSWCDTKY-ATENPKYE 60 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 + ++D L I I + LTGGEPL+Q + LI L GFE+ +ETNG++ Sbjct: 61 QIDIDTLLSFIASSGI------KRVTLTGGEPLIQPYIYILIDRLIYEGFEVNIETNGSV 114 >gi|119944858|ref|YP_942538.1| radical SAM domain-containing protein [Psychromonas ingrahamii 37] gi|119863462|gb|ABM02939.1| Radical SAM domain protein [Psychromonas ingrahamii 37] Length = 246 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 53/240 (22%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD------------ 51 Y + E+F T+QGEG + G A+F R GC++ C +CD Sbjct: 26 YKVNELFQTIQGEGFNTGVPAIFLRLQGCDV-----------GCAWCDTKHTWEINPDKQ 74 Query: 52 TDFVGIQGT--KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 T+ + + G+ + R+ +++ E G V+TGGEP L L L++ Sbjct: 75 TELILLTGSSNESTRWANVNAREIVAEIKRLG-YSANLVVITGGEPCLADLRELTTVLHE 133 Query: 110 RGFEIAVETNGT----IEPPQGIDWICVSPKAGC---------------DLKIKGGQELK 150 F+ +ET+GT + PP W+ +SPK ++K G E Sbjct: 134 FDFKTQIETSGTYPVLVAPPT---WVTLSPKVNMRAGKVVLQSALERADEIKHPVGTEKD 190 Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + Q++ EN + + LQP+ + T L C + WRLSVQ HK++GI Sbjct: 191 I--EQLDALLENLKSIEDKVICLQPISQKV--KATLLCSQVCIER-NWRLSVQMHKYLGI 245 >gi|307352768|ref|YP_003893819.1| Radical SAM domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307156001|gb|ADN35381.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571] Length = 204 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 23/141 (16%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK++ EIF ++QGEG + G + F R SGCNL +CR+CDT G+ Sbjct: 1 MKVF---EIFPSIQGEGPYQGIPSAFIRLSGCNL-----------RCRWCDTPKTQ-DGS 45 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 VD++ +++ ++ + +TGGEPL+Q D + L++ L++ G+ + +ET Sbjct: 46 SSEEMTVDEVFGQVKKLGLS------HVCITGGEPLIQQDELLSLLKDLHEDGYIVEIET 99 Query: 119 NGTIEPPQGIDWICVSPKAGC 139 NGTI+P +++ V C Sbjct: 100 NGTIDPVPVMEYSSVCMDIKC 120 >gi|292655864|ref|YP_003535761.1| radical SAM protein [Haloferax volcanii DS2] gi|291371719|gb|ADE03946.1| radical SAM protein, putative (TBD) [Haloferax volcanii DS2] Length = 257 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 18/131 (13%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F +LQGEG AG + F R SGCNL +C FCD+ + T Sbjct: 21 INELFASLQGEGKLAGVPSTFVRTSGCNL-----------RCWFCDSFHTSWEPTHAW-L 68 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 ++D++ +E + V+TGGEPL+ + + + + + VETNGT+E Sbjct: 69 SLDEIVAEVESL------SPEHVVVTGGEPLVHDETDALLSALDDDYHLTVETNGTLETD 122 Query: 126 QGIDWICVSPK 136 +D +SPK Sbjct: 123 APVDLASISPK 133 >gi|222528238|ref|YP_002572120.1| radical SAM domain-containing protein [Caldicellulosiruptor bescii DSM 6725] gi|222455085|gb|ACM59347.1| Radical SAM domain protein [Caldicellulosiruptor bescii DSM 6725] Length = 225 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 19/120 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 +++ E F++++GEG +G AVF RF+GCNL C +CDT + + + Sbjct: 14 FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------SCSWCDTKYAN-ENPQYE 61 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 + +D L D I I + LTGGEPL+Q + LI L GFE+ +ETNG++ Sbjct: 62 QIGIDALLDFILSTGI------KRVTLTGGEPLIQPHIYILIDRLIYEGFEVNIETNGSV 115 >gi|170723151|ref|YP_001750839.1| radical SAM domain-containing protein [Pseudomonas putida W619] gi|169761154|gb|ACA74470.1| Radical SAM domain protein [Pseudomonas putida W619] Length = 215 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 25/144 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 V L ++E+ + G K RY +TGGEPL Q + +PL+Q L G+E+++ET+G ++ Sbjct: 51 -VRSLDSIMEQ--VAGFKP-RYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLETSGALD- 105 Query: 125 PQGIDWICVSPKAGCDLKIKGGQE 148 I + DLK G +E Sbjct: 106 ---ISATDIRVSRVVDLKTPGSEE 126 >gi|312962750|ref|ZP_07777238.1| queuosine biosynthesis protein QueE [Pseudomonas fluorescens WH6] gi|311282967|gb|EFQ61560.1| queuosine biosynthesis protein QueE [Pseudomonas fluorescens WH6] Length = 218 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 10 ITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 53 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 + L D++E+ + G K RY +TGGEPL Q + +PL++ L G+E+++ET+G ++ Sbjct: 54 -IRTLDDILEQ--VAGYKP-RYVCVTGGEPLAQPNAIPLLKQLCDAGYEVSLETSGALD 108 >gi|260876575|ref|ZP_05888930.1| organic radical activating enzyme [Vibrio parahaemolyticus AN-5034] gi|260895066|ref|ZP_05903562.1| organic radical activating enzyme [Vibrio parahaemolyticus Peru-466] gi|308125822|ref|ZP_05777715.2| organic radical activating enzyme [Vibrio parahaemolyticus K5030] gi|308126346|ref|ZP_05909319.2| organic radical activating enzyme [Vibrio parahaemolyticus AQ4037] gi|308085913|gb|EFO35608.1| organic radical activating enzyme [Vibrio parahaemolyticus Peru-466] gi|308093608|gb|EFO43303.1| organic radical activating enzyme [Vibrio parahaemolyticus AN-5034] gi|308110779|gb|EFO48319.1| organic radical activating enzyme [Vibrio parahaemolyticus AQ4037] gi|308111580|gb|EFO49120.1| organic radical activating enzyme [Vibrio parahaemolyticus K5030] Length = 226 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 91/242 (37%), Gaps = 55/242 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 LY + E+F T+QGEG G AVF R C + C +CDT K Sbjct: 5 LYKLNEMFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWDAEEKD 53 Query: 63 GRYNVDQLADLIEE-QWITGEKE------------GRYCVLTGGEPLLQVDVPLIQALNK 109 R D L + W T E ++ V+TGGEP + PL +A Sbjct: 54 QRPIGDILVKTEDSPTWCTASAEDIVEQYKQQGFNAKHIVITGGEPCIYDLRPLSKAFED 113 Query: 110 RGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKI--------------------KGGQE 148 G + +ET+GT E W+ VSPK K+ K Sbjct: 114 MGCQCQIETSGTSEVVTSEKTWVTVSPKVAMKGKLPVLRSALERANEIKHPVGTQKDIDH 173 Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 L + ++ E I +LQP+ T L I C WRLS+QTHK++ Sbjct: 174 LDELLANADIKVETVI-------ALQPISQK--PRATQLCIETCIAR-NWRLSIQTHKYL 223 Query: 209 GI 210 I Sbjct: 224 SI 225 >gi|261252909|ref|ZP_05945482.1| queuosine Biosynthesis QueE Radical SAM [Vibrio orientalis CIP 102891] gi|260936300|gb|EEX92289.1| queuosine Biosynthesis QueE Radical SAM [Vibrio orientalis CIP 102891] Length = 222 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 94/238 (39%), Gaps = 47/238 (19%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y I E+F T+QGEG G +VF R C + C +CDT Sbjct: 1 MYKINEMFETIQGEGVFTGVPSVFVRLQECPV-----------GCAWCDTKQTWDATPTD 49 Query: 63 GRYNVDQLA--------------DLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 R + LA D++ E G ++ V+TGGEP + PL QA Sbjct: 50 ERPLNEILAKTEDSPTWCGVSAEDIVNEYKKQGYT-AKHIVITGGEPCIYDLRPLTQAFE 108 Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAG-------CDLKIKGGQELKLVFPQVNVSP 160 + G + +ET+GT E W+ VSPK D + E+K P Sbjct: 109 ENGCQCQIETSGTFEVKATTKTWVTVSPKVAMKGKLPVIDSALLRANEIK--HPVATQKD 166 Query: 161 ENYIGFDFER--------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + ER +LQP+ T L I C WRLS+QTHK++ I Sbjct: 167 IDQLDELLERAKVSEQTTVALQPISQK--PRATQLCIDVCVAR-NWRLSIQTHKYLSI 221 >gi|111222166|ref|YP_712960.1| mycobacteriophage protein Gp5 [Frankia alni ACN14a] gi|111149698|emb|CAJ61390.1| Mycobacteriophage protein Gp5 [Frankia alni ACN14a] Length = 221 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 23/148 (15%) Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72 +QGEG AGR+A F R GCNL C +CDT + G R+++ Sbjct: 1 MQGEGPAAGRLATFVRLGGCNL-----------SCSWCDTSYTW----DGARFDLRTEIT 45 Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNGTIEPP--- 125 + I + V+TGGEPLL + P L++ L ++ I VETNGT+ P Sbjct: 46 STAVETIAAKVTTDLVVITGGEPLLHQERPGWTALLRTLTQQQRAIHVETNGTVRPTPMS 105 Query: 126 -QGIDWICVSPKAGCDLKIKGGQELKLV 152 Q + VSPK +G Q +L Sbjct: 106 LQHVAMWVVSPKLRNAGTHRGRQRARLA 133 >gi|302187148|ref|ZP_07263821.1| radical SAM family protein [Pseudomonas syringae pv. syringae 642] Length = 215 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 29/148 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + L D++ + RY +TGGEPL Q + +P +++L G+E+++ET+G Sbjct: 51 -IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIPFLKSLCDAGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150 +D V P+ DLK G +E+ Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEVS 128 >gi|146306312|ref|YP_001186777.1| radical SAM domain-containing protein [Pseudomonas mendocina ymp] gi|145574513|gb|ABP84045.1| Radical SAM domain protein [Pseudomonas mendocina ymp] Length = 226 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 29/148 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CDT + + G Sbjct: 18 ITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDTAYA---FSGGEIV 63 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 +D + D + RY +TGGEPL Q + +PL+ L G+E+++ET+G Sbjct: 64 TLDSILDQV------AAYRPRYVCVTGGEPLAQPNCIPLLTRLCDAGYEVSLETSG---- 113 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150 +D V P+ DLK G E++ Sbjct: 114 --ALDVSAVDPRVSKVLDLKTPGSAEVQ 139 >gi|258593846|emb|CBE70187.1| Radical SAM domain protein [NC10 bacterium 'Dutch sediment'] Length = 214 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 27/126 (21%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + EIF ++QGE +AGR VF R +GCNL +CR+CDT + +G Sbjct: 1 MMSLRVNEIFYSIQGESTYAGRPCVFVRLTGCNL-----------RCRWCDTTYAFHEGE 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVL---TGGEPLLQVDV-PLIQALNKRGFEIAV 116 + +++Q+ + + G C L TGGEPLLQ V PLI L G+E+ + Sbjct: 50 Q---RSIEQVLEQV---------RGYKCPLVEITGGEPLLQEAVHPLIDRLLLEGYEVLI 97 Query: 117 ETNGTI 122 ET G++ Sbjct: 98 ETGGSL 103 >gi|238921904|ref|YP_002935418.1| queuosine biosynthesis protein QueE [Eubacterium eligens ATCC 27750] gi|238873576|gb|ACR73284.1| queuosine biosynthesis protein QueE [Eubacterium eligens ATCC 27750] Length = 221 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 19/120 (15%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F+++ GEG G +AVF RF GCNL C +CDT + Sbjct: 3 VVEKFISINGEGRRTGELAVFIRFKGCNL-----------NCSYCDTKWANEPACDYEEL 51 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTIE 123 + D++ + + E I + LTGGEPLLQ D+ + + LNK + +ETNG ++ Sbjct: 52 SPDEICEYVSETGI------KNVTLTGGEPLLQKDIRSLVEKLLNKSDIRVEIETNGAVD 105 >gi|51948805|gb|AAU14323.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] Length = 129 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -IHTLDDIMGQVV---AYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 +D V P+ DLK G +E+ Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127 >gi|37522605|ref|NP_925982.1| hypothetical protein gll3036 [Gloeobacter violaceus PCC 7421] gi|35213606|dbj|BAC90977.1| gll3036 [Gloeobacter violaceus PCC 7421] Length = 214 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 97/216 (44%), Gaps = 31/216 (14%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 ++E F T+QGEG AG V F R GC + C +CDT + G Sbjct: 18 VQETFGPTIQGEGYWAGAVVDFIRLYGCPV-----------GCPWCDTGYA--DGGPQLP 64 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI- 122 V +DLI E K R V++GGEP + +P L++A+ + G +A+ET+G Sbjct: 65 RAVRTFSDLILEL-----KSPR-VVISGGEPFIHAALPALVEAIGRTGRAVAIETSGAFW 118 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD-FERF-------SLQ 174 +P W+ +SPK + ++ +V + D + RF SLQ Sbjct: 119 QPVPDWAWVTLSPKEHVSPRHPVNPQMWRRANEVKIVIAGGAELDVYRRFLPPGVPVSLQ 178 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P + E L + +P++RLSVQ HK++ + Sbjct: 179 P-EWEARERTLPLTLELLKAHPRYRLSVQLHKYLQV 213 >gi|85711961|ref|ZP_01043015.1| Organic radical activating enzyme [Idiomarina baltica OS145] gi|85694147|gb|EAQ32091.1| Organic radical activating enzyme [Idiomarina baltica OS145] Length = 223 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 43/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I EIF TLQGEG G ++F R GC + W +++D++S ++ Sbjct: 3 YRINEIFETLQGEGTFTGVPSIFIRLQGCPVGCPWCDTQHTWDVKQEDQVSVATMMAKSE 62 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 ++ + + +LI+++ ++ V+TGGEP + L + L +G Sbjct: 63 AT----SEWAEMSSADIVELIKQR----GYRAKHVVITGGEPAMYDLRELGEVLEAQGMR 114 Query: 114 IAVETNGTIE-PPQGIDWICVSPKAGCDLKIKGG-----------QELKL-VFPQVNVSP 160 + +ET+GT E W+ VSPK L + GG E+K + Q ++ Sbjct: 115 LQIETSGTYELLITAGTWVTVSPK----LDMPGGYLVRSDCLSRADEIKHPIAMQKHIDA 170 Query: 161 ENYI--GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + G + LQP+ T LA+ C + WRLSVQ HK++ I Sbjct: 171 LDRLLQGQKLKSDVVICLQPISQR--PRATELAMKTCIER-NWRLSVQMHKYLNI 222 >gi|281358520|ref|ZP_06245000.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548] gi|281315002|gb|EFA99035.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548] Length = 214 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 58/118 (49%), Gaps = 19/118 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E FL+LQGE HAGR +F R +GCNL C +CDT + G Sbjct: 4 LVEAFLSLQGESTHAGRRCIFLRLAGCNL-----------DCNYCDTMYAH-SPESGEER 51 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 +VD+L R +TGGEPLL + P L + L GFE+ +ETNG++ Sbjct: 52 SVDELVA------AAASFPCRLVEITGGEPLLTPETPELCRRLLALGFEVLIETNGSL 103 >gi|282895310|ref|ZP_06303512.1| hypothetical protein CRD_00006 [Raphidiopsis brookii D9] gi|281199616|gb|EFA74476.1| hypothetical protein CRD_00006 [Raphidiopsis brookii D9] Length = 208 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 47/226 (20%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I E F T+QGEG G + F R SGC L C +CDT G G Sbjct: 10 IHETFQSTVQGEGYWTGSLVDFIRLSGCPL-----------GCPWCDT------GYADGG 52 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 N+ + I E + E + V++GGEP + +P L+QAL G ++++ET+G+ Sbjct: 53 ANLPRFERTIGE--LLAEIKSPRIVISGGEPFIHKHLPELVQALLGAGKQVSIETSGSFW 110 Query: 124 PPQGID-WICVSPKAGCDLK-----------------IKGGQELKLVFPQVNVSPENYIG 165 + WI +SPK + K I+ GQE+ ++ P+ Y+ Sbjct: 111 KEVSLSAWITLSPKEHINPKYPVQNQFWSRANEAKIVIETGQEIDFYQEYLSARPDLYV- 169 Query: 166 FDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 LQP + ++ L + Q P ++LS+QTHK+IG++ Sbjct: 170 ------YLQP-EWNSSSKSLALILQLLQQKPDYKLSLQTHKYIGLQ 208 >gi|305432704|ref|ZP_07401864.1| radical SAM domain protein [Campylobacter coli JV20] gi|304444213|gb|EFM36866.1| radical SAM domain protein [Campylobacter coli JV20] Length = 247 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 7/123 (5%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTKGGR 64 E FL++QGEG ++G++A+F RF+GCN G + + + CDT Sbjct: 5 ESFLSIQGEGKYSGKLAIFMRFAGCNFNCSGFGVKLIKNGKTLKGCDTIRAVFTKEFNEE 64 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNG 120 Y + ++L + + V+TGGEPL+ + P IQAL K FE+ E+NG Sbjct: 65 YEILNASELFKRVLDLKKDFNPIVVITGGEPLIHHENPEFIDFIQALLKNNFEVHFESNG 124 Query: 121 TIE 123 +IE Sbjct: 125 SIE 127 >gi|182412684|ref|YP_001817750.1| radical SAM domain-containing protein [Opitutus terrae PB90-1] gi|177839898|gb|ACB74150.1| Radical SAM domain protein [Opitutus terrae PB90-1] Length = 231 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 21/134 (15%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGEG G +VF R SGCNL +C +CDT + +G + Sbjct: 3 ISEIFYSLQGEGLLTGVPSVFVRTSGCNL-----------RCNWCDTPYAS-WNPEGKPW 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA-LNKRGFEIAVETNGTIEP 124 ++Q+ ++ R+ VLTGGEP++ ++ + A L + I +ET T+ Sbjct: 51 RIEQIVREVQSH-----PTARHVVLTGGEPMIAKEIAELAAQLKGLHYHITIETAATVA- 104 Query: 125 PQGI--DWICVSPK 136 P+GI D +SPK Sbjct: 105 PEGIACDLASLSPK 118 >gi|51948899|gb|AAU14370.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] Length = 129 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G VF R +GC L +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTTGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -IHTLDDIMGQ---VATYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 +D V P+ DLK G +E+ Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127 >gi|325678494|ref|ZP_08158109.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Ruminococcus albus 8] gi|324109805|gb|EGC04006.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Ruminococcus albus 8] Length = 222 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 15/122 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 +L+S+ E F+++ GEG AG +A+F RF+GC+L +C +CDT + + Sbjct: 3 QLFSLAEHFISINGEGQRAGELALFLRFTGCDL-----------RCVWCDTLWAVPKDAP 51 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 ++ L D+ + G R LTGGEPL+Q V L +AL G + +ETNG Sbjct: 52 HKDKDLRSLLDIARDAVSHGV---RNVTLTGGEPLMQKGIVRLFEALLDMGLRVEIETNG 108 Query: 121 TI 122 ++ Sbjct: 109 SV 110 >gi|302531820|ref|ZP_07284162.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptomyces sp. AA4] gi|302440715|gb|EFL12531.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptomyces sp. AA4] Length = 237 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/137 (37%), Positives = 68/137 (49%), Gaps = 30/137 (21%) Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD--- 68 T+QGEG GR AVF R CNL C+ CDT + + R+++D Sbjct: 19 TVQGEGPSIGRRAVFIRLMNCNL-----------TCKNCDTPYTWDR----TRFDLDAEG 63 Query: 69 ---QLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123 ++DL+ W+T + V+TGGEPL+Q L Q L G E+ VETNGTI Sbjct: 64 TVASISDLL--AWVTVQSVD-LVVITGGEPLMQQRSLTALAQGLADAGLEVEVETNGTIV 120 Query: 124 P-PQGIDWIC---VSPK 136 P P + W+ VSPK Sbjct: 121 PAPDLLAWVTRFNVSPK 137 >gi|320335721|ref|YP_004172432.1| Radical SAM domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319757010|gb|ADV68767.1| Radical SAM domain protein [Deinococcus maricopensis DSM 21211] Length = 230 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/138 (34%), Positives = 64/138 (46%), Gaps = 22/138 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + E F T QGEG H GR A F R GC C +CD+ GT Sbjct: 3 YPVYERFYTWQGEGVHLGRAAYFVRLYGC-----------PQACPWCDS-----AGTWHR 46 Query: 64 RYNVD----QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 Y D A I + +G V+TGGEP+L L+ AL+ G + +ET+ Sbjct: 47 DYRPDGVTLMTAHEIAQAVAAESPDGAVVVITGGEPILFDLTALVDALHALGRRVHLETS 106 Query: 120 GTIEPPQG-IDWICVSPK 136 G I P +G +DW+ +SPK Sbjct: 107 G-IAPLRGHLDWVTLSPK 123 >gi|28898413|ref|NP_798018.1| hypothetical protein VP1639 [Vibrio parahaemolyticus RIMD 2210633] gi|28806630|dbj|BAC59902.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] Length = 222 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 91/242 (37%), Gaps = 55/242 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y + E+F T+QGEG G AVF R C + C +CDT K Sbjct: 1 MYKLNEMFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWDAEEKD 49 Query: 63 GRYNVDQLADLIEE-QWITGEKE------------GRYCVLTGGEPLLQVDVPLIQALNK 109 R D L + W T E ++ V+TGGEP + PL +A Sbjct: 50 QRPIGDILVKTEDSPTWCTASAEDIVEQYKQQGFNAKHIVITGGEPCIYDLRPLSKAFED 109 Query: 110 RGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKI--------------------KGGQE 148 G + +ET+GT E W+ VSPK K+ K Sbjct: 110 MGCQCQIETSGTSEVVTSEKTWVTVSPKVAMKGKLPVLRSALERANEIKHPVGTQKDIDH 169 Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 L + ++ E I +LQP+ T L I C WRLS+QTHK++ Sbjct: 170 LDELLANADIKVETVI-------ALQPISQK--PRATQLCIETCIAR-NWRLSIQTHKYL 219 Query: 209 GI 210 I Sbjct: 220 SI 221 >gi|312877003|ref|ZP_07736977.1| Radical SAM domain protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796234|gb|EFR12589.1| Radical SAM domain protein [Caldicellulosiruptor lactoaceticus 6A] Length = 225 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 19/120 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 +++ E F++++GEG +G AVF RF+GCNL C +CDT + + + Sbjct: 14 FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------NCSWCDTRYAN-ENPQYE 61 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 + ++D L + I I + LTGGEPL+Q + LI L GFE+ +ETNG++ Sbjct: 62 QVDIDTLLNFISSTGI------KRITLTGGEPLIQPYIYILIDRLIYEGFEVNIETNGSV 115 >gi|291550955|emb|CBL27217.1| Organic radical activating enzymes [Ruminococcus torques L2-14] Length = 216 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 28/144 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F ++ GEG AG +AVF RF GCNL +C +CDT + + Sbjct: 3 VVEKFTSINGEGTRAGELAVFIRFKGCNL-----------RCSYCDTMWANEPDCQYKEE 51 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE- 123 +++ + + E I R LTGGEPLLQ D+ LI L + G ++ +ETNG ++ Sbjct: 52 TPEEILNYVLETGI------RNVTLTGGEPLLQKDIRELIHLLLQAGLQVEIETNGAVDL 105 Query: 124 -------PPQGIDWICVSPKAGCD 140 P +D+ P +GC+ Sbjct: 106 SAFCEERPVFTMDYKL--PSSGCE 127 >gi|254490155|ref|ZP_05103346.1| radical SAM domain protein, putative [Methylophaga thiooxidans DMS010] gi|224464641|gb|EEF80899.1| radical SAM domain protein, putative [Methylophaga thiooxydans DMS010] Length = 213 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G VF R +GC L +C +CDT++ G K Sbjct: 6 ITEIFYSLQGESRTVGLPTVFVRLTGCPL-----------RCGYCDTEYAFYGGQKM--- 51 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 ++D++E+ + RY +TGGEPL Q + +PL+ AL G E+++ET+G ++ Sbjct: 52 ---DISDIVEQ---VAAYKPRYVCVTGGEPLAQPNCIPLLTALCDLGVEVSIETSGAMD 104 >gi|196230866|ref|ZP_03129727.1| Radical SAM domain protein [Chthoniobacter flavus Ellin428] gi|196225207|gb|EDY19716.1| Radical SAM domain protein [Chthoniobacter flavus Ellin428] Length = 231 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 22/143 (15%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF ++QGEG G +VF R SGCNL +CR+CDT + +G Sbjct: 3 ISEIFYSIQGEGELTGVPSVFVRTSGCNL-----------RCRWCDTKYAS-WNPQGDEM 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP 124 ++ ++ ++ T + VLTGGEP++ + L Q + G I +ET GTI Sbjct: 51 SIAEIFARVDAFPAT------HVVLTGGEPMVAKGIHELAQRFREAGKHITIETAGTI-A 103 Query: 125 PQGI--DWICVSPKAGCDLKIKG 145 P+GI D +SPK G ++G Sbjct: 104 PEGIACDLASLSPKLGNSTPLEG 126 >gi|213586502|ref|ZP_03368328.1| hypothetical protein SentesTyph_36610 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 170 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 75/162 (46%), Gaps = 33/162 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLW---SGREQDRLSAQCRFC 50 Y I E+F TLQGEG G A+F R GC + W S RE S + Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTK 62 Query: 51 DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110 ++D K G + + L +I Q T R+ V+TGGEP + +PL L K Sbjct: 63 ESD-------KWGAASSEDLLAVINRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKS 111 Query: 111 GFEIAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQEL 149 GF +ET+GT E P W+ VSPK + ++GG ++ Sbjct: 112 GFSCQIETSGTHEVRCTPN--TWVTVSPK----VNMRGGYDV 147 >gi|168182488|ref|ZP_02617152.1| radical SAM domain protein [Clostridium botulinum Bf] gi|237794898|ref|YP_002862450.1| radical SAM domain-containing protein [Clostridium botulinum Ba4 str. 657] gi|182674381|gb|EDT86342.1| radical SAM domain protein [Clostridium botulinum Bf] gi|229261475|gb|ACQ52508.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657] Length = 221 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 20/142 (14%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + E F+++ GEG +G++A+F RF+GCNL C +CDT + + Sbjct: 3 FKVVERFVSINGEGRRSGQLAIFIRFAGCNL-----------NCSYCDTLWANEKDVSYE 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNK-RGFEIAVETNGT 121 + + D I+ Q I + LTGGEPL+Q V L++ L+K + + +ETNG+ Sbjct: 52 LISSKDIYDYIKSQKI------KNVTLTGGEPLMQKGIVELLKLLSKDKELYVEIETNGS 105 Query: 122 IEPPQGIDWICVSPKAGCDLKI 143 + + +D I SP+ D K+ Sbjct: 106 VLLDEFLD-IENSPRFTMDYKL 126 >gi|15641377|ref|NP_231009.1| hypothetical protein VC1365 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153819362|ref|ZP_01972029.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153821325|ref|ZP_01973992.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227081536|ref|YP_002810087.1| hypothetical protein VCM66_1320 [Vibrio cholerae M66-2] gi|229505054|ref|ZP_04394564.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae BX 330286] gi|229511276|ref|ZP_04400755.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae B33] gi|229518394|ref|ZP_04407838.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae RC9] gi|229608058|ref|YP_002878706.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae MJ-1236] gi|254848487|ref|ZP_05237837.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|298498551|ref|ZP_07008358.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9655859|gb|AAF94523.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126510107|gb|EAZ72701.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126521143|gb|EAZ78366.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227009424|gb|ACP05636.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|229345109|gb|EEO10083.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae RC9] gi|229351241|gb|EEO16182.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae B33] gi|229357277|gb|EEO22194.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae BX 330286] gi|229370713|gb|ACQ61136.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae MJ-1236] gi|254844192|gb|EET22606.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|297542884|gb|EFH78934.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 245 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 96/235 (40%), Gaps = 41/235 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGI 57 LY I E+F +QGEG G AVF R GC + W +Q + L + T F I Sbjct: 24 LYRINEMFEIIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLDSD----QTSFSQI 79 Query: 58 Q-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 T A + +++ + ++ V+TGGEP + L QA G + Sbjct: 80 LLKTNDAPTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQI 139 Query: 117 ETNGTIEPPQGID-WICVSPKAG-------CDLKIKGGQELKL-------------VFPQ 155 ET+GT E + W+ VSPK D ++ E+K + + Sbjct: 140 ETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLAR 199 Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 VS + I +LQP+ T L I C WRLS+QTHK++ I Sbjct: 200 AQVSAQTAI-------ALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244 >gi|171912287|ref|ZP_02927757.1| Radical SAM domain protein [Verrucomicrobium spinosum DSM 4136] Length = 231 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 20/133 (15%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E F ++QGEG G +VF R SGCNL +CR+CDT + +G Sbjct: 3 ISETFFSVQGEGKLTGVPSVFIRTSGCNL-----------RCRWCDTPYAS-WNPEGDDV 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP 124 +V+ D++ E RY V+TGGEP + + L+Q L G I +ET GT+ P Sbjct: 51 SVE---DILAE---VNRHPTRYVVVTGGEPTIAAGMRELLQGLRDAGKHITIETAGTVMP 104 Query: 125 PQ-GIDWICVSPK 136 D +SPK Sbjct: 105 TDLACDLASLSPK 117 >gi|223938514|ref|ZP_03630406.1| Radical SAM domain protein [bacterium Ellin514] gi|223892776|gb|EEF59245.1| Radical SAM domain protein [bacterium Ellin514] Length = 244 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 28/126 (22%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EI+L+LQGE AG +F R + CNL +C +CDT + +G K G Sbjct: 7 VNEIYLSLQGESTFAGLPCIFVRLTACNL-----------RCSYCDTAYAFTEGAKQG-- 53 Query: 66 NVDQLADLIEE---------QWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIA 115 +A+++ E Q + G K LTGGEPLLQ + +PL++ L GF + Sbjct: 54 ----MAEMLAEIRTLAASYSQTVGGHKMP-LIELTGGEPLLQPNSLPLMKTLCDEGFTVL 108 Query: 116 VETNGT 121 +ET+G Sbjct: 109 IETSGA 114 >gi|255525616|ref|ZP_05392550.1| Radical SAM domain protein [Clostridium carboxidivorans P7] gi|296185503|ref|ZP_06853913.1| radical SAM domain protein [Clostridium carboxidivorans P7] gi|255510706|gb|EET87012.1| Radical SAM domain protein [Clostridium carboxidivorans P7] gi|296050337|gb|EFG89761.1| radical SAM domain protein [Clostridium carboxidivorans P7] Length = 221 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 19/121 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + E F+++ GEG +G++AVF RF+GCNL +C +CDT + + Sbjct: 3 FKVVEKFISINGEGPMSGQLAVFIRFAGCNL-----------RCSYCDTLWANEKDVPYE 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVETNGT 121 +N ++ + I+ I + LTGGEPL+Q D+ L++ L + + VETNG+ Sbjct: 52 TFNAKEIYEYIKSTSI------KNVTLTGGEPLMQQDIMELLKLLCEDKNLYVEVETNGS 105 Query: 122 I 122 I Sbjct: 106 I 106 >gi|163781704|ref|ZP_02176704.1| hypothetical protein HG1285_02438 [Hydrogenivirga sp. 128-5-R1-1] gi|159882924|gb|EDP76428.1| hypothetical protein HG1285_02438 [Hydrogenivirga sp. 128-5-R1-1] Length = 218 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 39/225 (17%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 S+ EI+ ++QGEG G ++F R GCNL +C +CD Q Sbjct: 13 SVNEIYESIQGEGLLVGTPSIFIRLQGCNL-----------RCPWCD------QPEALSF 55 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 N + I ++ E R+ V+TGGEP ++ L++AL + GF + +ETNGT+ Sbjct: 56 SNTTIPVEGILQK--VQEFPARHVVITGGEPFAHQNLHVLVRALIEEGFSLQIETNGTLW 113 Query: 124 PPQGID------WICVSPKAGCDL-----KIKGGQELKLV----FPQVNVSPENYIGFDF 168 +G+D I SPKA + IK ELK V F V E + G Sbjct: 114 -NEGLDSMAEQVHITCSPKAAANFFVNPRVIKHTNELKFVVDEEFSSDVVLREEFRGLLL 172 Query: 169 -ERFSLQPMDG--PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E+ LQP FL + ++ + K R+ Q HK +G+ Sbjct: 173 AEKVVLQPEGNKVSFLRKALDIQRELSLKGFKVRVIPQVHKLLGL 217 >gi|187779781|ref|ZP_02996254.1| hypothetical protein CLOSPO_03377 [Clostridium sporogenes ATCC 15579] gi|187773406|gb|EDU37208.1| hypothetical protein CLOSPO_03377 [Clostridium sporogenes ATCC 15579] Length = 226 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 20/142 (14%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + E F+++ GEG +G++A+F RF+GCNL C +CDT + + Sbjct: 8 FKVVERFVSINGEGRRSGQLAIFIRFAGCNL-----------NCSYCDTLWANEKDVSYQ 56 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNK-RGFEIAVETNGT 121 + + D I+ Q I + LTGGEPL+Q V L++ L+K + + +ETNG+ Sbjct: 57 LISSKDIYDYIKSQKI------KNVTLTGGEPLMQKGIVELLKVLSKDKELYVEIETNGS 110 Query: 122 IEPPQGIDWICVSPKAGCDLKI 143 + + +D I SP D K+ Sbjct: 111 VLLDEFLD-IENSPSFTMDYKL 131 >gi|198282218|ref|YP_002218539.1| Radical SAM domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667706|ref|YP_002424583.1| radical SAM domain protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246739|gb|ACH82332.1| Radical SAM domain protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519919|gb|ACK80505.1| radical SAM domain protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 214 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 21/118 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE GR A F R +GC L +CR+CDT + GG + Sbjct: 7 ITEIFHSLQGETRSVGRPATFVRLTGCPL-----------RCRYCDTAY----AFHGGEW 51 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 ++ +++E+ G R V+TGGEPL Q DV PL+ L G E+ +ET+G + Sbjct: 52 R--RIPEILEQVRAGG---NRLVVVTGGEPLAQADVLPLMTQLCDAGHEVFLETSGAL 104 >gi|290967883|ref|ZP_06559433.1| radical SAM domain protein [Megasphaera genomosp. type_1 str. 28L] gi|290782022|gb|EFD94600.1| radical SAM domain protein [Megasphaera genomosp. type_1 str. 28L] Length = 210 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 97/225 (43%), Gaps = 44/225 (19%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 KLY + E+F ++ GEG AG +A F R GCNL +C +CDT + +GT Sbjct: 4 KLY-VNELFNSIDGEGRRAGELASFIRLCGCNL-----------RCSYCDTTYAFTEGTP 51 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG- 120 +EE I + + R LTGGEPLLQ L+Q L R ++ +ETNG Sbjct: 52 MA----------VEE--ILSQLQYRNITLTGGEPLLQDVHLLLQRLQDR--DVNIETNGS 97 Query: 121 -TIEPPQG-------IDWICVSPKAGCDLKIKGGQELK-------LVFPQVNVSPENYIG 165 +I P +D+ +S +K + Q L+ +V ++ I Sbjct: 98 VSIRPYLSYSHVWFTVDYKSISSGMTTAMKEENFQLLRPQDVLKFVVGTHADLEQARKIC 157 Query: 166 FDFERFSLQPMDGPF--LEENTNLAISYCFQNPKWRLSVQTHKFI 208 F + F +E +A ++ WRL +Q HK+I Sbjct: 158 AYFNPSCPIYISAVFAAIEPKEIVAYMEAYRLMNWRLQLQLHKYI 202 >gi|282900250|ref|ZP_06308202.1| hypothetical protein CRC_01639 [Cylindrospermopsis raciborskii CS-505] gi|281194865|gb|EFA69810.1| hypothetical protein CRC_01639 [Cylindrospermopsis raciborskii CS-505] Length = 208 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 49/227 (21%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I E F T+QGEG G + F R SGC L C +CDT G G Sbjct: 10 IHETFQSTVQGEGYWTGSLVDFIRLSGCPL-----------SCPWCDT------GYADGG 52 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI- 122 N+ + I E + E + V++GGEP + +P L++AL G ++++ET+G+ Sbjct: 53 ANLPRFERTIGE--LLAELKSPRIVISGGEPFIHKHLPELVEALLGAGKQVSIETSGSFW 110 Query: 123 -EPPQGIDWICVSPKAGCDLK-----------------IKGGQELKLVFPQVNVSPENYI 164 E P WI +SPK + K I+ GQE++ Q++ P+ + Sbjct: 111 KEVPLSA-WITLSPKEHINPKYPVQNQFWSRANEAKIVIETGQEIEFYQEQLSAHPDLCV 169 Query: 165 GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 E S ++ +L + Q P ++LS+QTHK+IG++ Sbjct: 170 YLQPEWNSSS--------KSLDLILQLLQQKPDYKLSLQTHKYIGLQ 208 >gi|26987960|ref|NP_743385.1| radical SAM domain protein [Pseudomonas putida KT2440] gi|148546497|ref|YP_001266599.1| radical SAM domain-containing protein [Pseudomonas putida F1] gi|24982673|gb|AAN66849.1|AE016313_8 radical activating enzyme [Pseudomonas putida KT2440] gi|5514780|emb|CAB50782.1| hypothetical protein [Pseudomonas putida] gi|148510555|gb|ABQ77415.1| Radical SAM domain protein [Pseudomonas putida F1] gi|313497577|gb|ADR58943.1| Radical SAM domain protein [Pseudomonas putida BIRD-1] Length = 215 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 25/144 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 V L ++E+ + G K RY +TGGEPL Q + +PL+Q L G+E+++ET+G ++ Sbjct: 51 -VRTLDSILEQ--VAGFKP-RYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLETSGALDI 106 Query: 125 PQGIDWICVSPKAGCDLKIKGGQE 148 G D DLK G +E Sbjct: 107 A-GTD---TRVSRVVDLKTPGSEE 126 >gi|126180149|ref|YP_001048114.1| radical SAM domain-containing protein [Methanoculleus marisnigri JR1] gi|125862943|gb|ABN58132.1| Radical SAM domain protein [Methanoculleus marisnigri JR1] Length = 202 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 100/227 (44%), Gaps = 48/227 (21%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +LQGEG + GR F R +GCNL +C +CDT + G Sbjct: 3 VSEIFRSLQGEGKNQGRPCTFIRLAGCNL-----------RCAWCDTPYA---REGGEEM 48 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT-- 121 +V Q+ D + W+ G + +TGGEPLLQ + + L++ + G+ + +ETNGT Sbjct: 49 SVTQVLDRV---WLL---RGTHICITGGEPLLQREDVLKLLEKFSLHGYTVEIETNGTCD 102 Query: 122 ---IEPPQGI--DWICVSPKAGCDLKIKG------------GQELKLVFPQVNVSPENYI 164 ++P I D C S DL + E L++ + +S Sbjct: 103 FRDMQPYASICMDVKCPSSGEKSDLSLLSFITPRDCVKFVVADEDDLLYARAVMSRCEIR 162 Query: 165 GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 G F + P++G + +A +N R +Q HK +G++ Sbjct: 163 GEVF----ISPVEG---SDYRAVADQIVEENLPVRFQLQLHKILGVK 202 >gi|104783064|ref|YP_609562.1| radical activating enzyme [Pseudomonas entomophila L48] gi|95112051|emb|CAK16778.1| putative radical activating enzyme [Pseudomonas entomophila L48] Length = 215 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 25/144 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 V L ++E+ + G K RY +TGGEPL Q + +PL+Q L G+E+++ET+G ++ Sbjct: 51 -VRTLDSILEQ--VAGFKP-RYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLETSGALDI 106 Query: 125 PQGIDWICVSPKAGCDLKIKGGQE 148 G D DLK G +E Sbjct: 107 A-GTD---TRVSRVVDLKTPGSEE 126 >gi|294055328|ref|YP_003548986.1| Radical SAM domain protein [Coraliomargarita akajimensis DSM 45221] gi|293614661|gb|ADE54816.1| Radical SAM domain protein [Coraliomargarita akajimensis DSM 45221] Length = 226 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 21/156 (13%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 K + E F + QGEG HAGR A F R GC + C +CD+ GT Sbjct: 3 KQLPVHEQFYSFQGEGCHAGRAAYFIRLFGCPV-----------HCPWCDS-----AGTW 46 Query: 62 GGRYNVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 Y + + ++ + + + V+TGGEP + L L + G+ + +ET+ Sbjct: 47 HPDYVPESIDRVLANDLLASVQKTAAEFVVITGGEPAIHDLSELTAVLRRAGYPVHLETS 106 Query: 120 GTIEPPQGIDWICVSP---KAGCDLKIKGGQELKLV 152 G E DW+ +SP K +K E KL+ Sbjct: 107 GAFELKGVFDWVTLSPKRWKLPLPENLKRADEFKLI 142 >gi|145641210|ref|ZP_01796790.1| predicted methyltransferase [Haemophilus influenzae R3021] gi|145274047|gb|EDK13913.1| predicted methyltransferase [Haemophilus influenzae 22.4-21] Length = 181 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 90/200 (45%), Gaps = 35/200 (17%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +VF RF CNL C +CDT + + R++V Q+ +E+ W K Sbjct: 3 SVFVRFGKCNL-----------DCPWCDTPYNNFK-----RWSVSQI---LEKVWSFSSK 43 Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 ++TGGEP + + L++ G+ +A+ETNG P ID+I SPK+ K Sbjct: 44 N---IIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLKAIPAQIDYIATSPKSLYAHK 100 Query: 143 -----IKGGQELKLV----FPQVNVSPENYIGFDFERFSLQPMDGP--FLEENTNLA-IS 190 I E+++V P E I S +DG LE T L ++ Sbjct: 101 YEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSPCEIDGKMNLLETITLLGQLN 160 Query: 191 YCFQNPKWRLSVQTHKFIGI 210 PKW+LS+QTHK IGI Sbjct: 161 QRSNKPKWQLSLQTHKLIGI 180 >gi|258621538|ref|ZP_05716571.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258586156|gb|EEW10872.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 216 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 95/224 (42%), Gaps = 31/224 (13%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 +F T+QGEG G AVF R GC + W +Q + + + ++ + + Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLESDQTSFPQILLKTSDAPTW 60 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP- 124 D+IE G + ++ V+TGGEP + L QA G + +ET+GT E Sbjct: 61 CQASAQDVIERYRAQG-YQAKHIVITGGEPCIYDLTELTQAFEAIGCQCQIETSGTYEIL 119 Query: 125 PQGIDWICVSPKAG-------CDLKIKGGQELKLVFPQVNVSPENYI----------GFD 167 W+ VSPK D ++ E+K P V+ EN I D Sbjct: 120 ATPTTWVTVSPKVAMKGKLPILDSALQRANEIK--HP---VATENDIDKLDELLVRASVD 174 Query: 168 FER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 175 AKTVIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215 >gi|260437277|ref|ZP_05791093.1| radical SAM domain protein [Butyrivibrio crossotus DSM 2876] gi|292810587|gb|EFF69792.1| radical SAM domain protein [Butyrivibrio crossotus DSM 2876] Length = 222 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 25/128 (19%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y + E F+++ GEG AG +A F R GCNL C +CDT + Sbjct: 1 MAEYKVVETFVSINGEGRKAGELAFFLRLKGCNL-----------DCSYCDTKW----AN 45 Query: 61 KGGRYNVDQLADLIEEQWITG--EKEG-RYCVLTGGEPLLQVDVPLIQAL--NKRGFEIA 115 KG D ++++E I G +K G R +TGGEPL + D+ ++ L N R + Sbjct: 46 KG-----DASFEIMDENEIYGLIKKSGIRNVTITGGEPLFRKDMAILLELLDNDRELSVE 100 Query: 116 VETNGTIE 123 +ETNG+++ Sbjct: 101 IETNGSVD 108 >gi|301063545|ref|ZP_07204071.1| radical SAM domain protein [delta proteobacterium NaphS2] gi|300442354|gb|EFK06593.1| radical SAM domain protein [delta proteobacterium NaphS2] Length = 215 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 21/117 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF ++QGE +AG VF R +GCNL +C +CDT + +GG Sbjct: 5 VNEIFYSIQGESSYAGLPCVFVRLTGCNL-----------RCSYCDTRYA---YEEGGIL 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 ++ + + I + R +TGGEPL+Q P LI++L + G+++ +ETNG+ Sbjct: 51 EINHIFEQI------APMQCRLVEITGGEPLVQEKTPILIESLLEDGYDVLLETNGS 101 >gi|88810549|ref|ZP_01125806.1| Radical SAM domain protein [Nitrococcus mobilis Nb-231] gi|88792179|gb|EAR23289.1| Radical SAM domain protein [Nitrococcus mobilis Nb-231] Length = 225 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 31/166 (18%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +LQGE G G VF R +GC L +C +CDT + G K Sbjct: 18 VTEIFYSLQGEAGTVGAPTVFVRLTGCPL-----------RCHYCDTAYAFHGGEK---M 63 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 ++ ++ D + GE ++ +TGGEPL Q + L+ +L RG+ +++ET+G Sbjct: 64 SIIRILDRV------GEHAAKFVTVTGGEPLAQRGCLTLLSSLCDRGYRVSLETSG---- 113 Query: 125 PQGIDWICVSPKA--GCDLKIKG-GQELKLVFPQVN-VSPENYIGF 166 +D V P+ DLK G G+E + + +N + P + + F Sbjct: 114 --ALDVQAVDPRVIKVMDLKTPGSGEERRNRWENLNYLRPHDELKF 157 >gi|302879778|ref|YP_003848342.1| Radical SAM domain-containing protein [Gallionella capsiferriformans ES-2] gi|302582567|gb|ADL56578.1| Radical SAM domain protein [Gallionella capsiferriformans ES-2] Length = 219 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G VF R +GC L +C +CDT + GG+ Sbjct: 12 ITEIFFSLQGETRLIGLPTVFVRLTGCPL-----------RCVYCDTAY----AFSGGKN 56 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 + LA+++++ + + RY +TGGEPL Q + +PL++AL G+++++ET+G ++ Sbjct: 57 HT--LAEILQQ---VAQYKTRYVTVTGGEPLAQRNCLPLLKALCDAGYQVSLETSGALD 110 >gi|218961765|ref|YP_001741540.1| Radical SAM [Candidatus Cloacamonas acidaminovorans] gi|167730422|emb|CAO81334.1| Radical SAM [Candidatus Cloacamonas acidaminovorans] Length = 209 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 21/131 (16%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 K ++ EIF +LQGE ++G +F R S CNL +C +CDT + +G Sbjct: 3 KHLNVTEIFYSLQGESAYSGYPCIFIRLSECNL-----------RCVYCDTQYAFGKGKS 51 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 ++ ++EE + +TGGEPLLQ DV L + L+K ++I +ETNG Sbjct: 52 MA------ISSIMEE---VKKYPCSLTEITGGEPLLQEDVDALFEELHKSSYKILLETNG 102 Query: 121 TIEPPQGIDWI 131 I + D++ Sbjct: 103 AISLEKVPDYV 113 >gi|269467818|gb|EEZ79570.1| organic radical activating enzyme [uncultured SUP05 cluster bacterium] Length = 211 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 21/120 (17%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +I EIF +LQGE G VF R +GC L +C +CDT++ KG Sbjct: 5 NINEIFYSLQGEAREVGLPTVFVRLTGCPL-----------RCTYCDTEY----AFKGN- 48 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 N ++ ++ E + + +Y +TGGEPL Q++ L+ AL K G+++++ET+G+I+ Sbjct: 49 -NTLSISKILTE---VKKYKTQYVCITGGEPLAQINCHVLLDALVKEGYQVSLETSGSID 104 >gi|158314658|ref|YP_001507166.1| radical SAM domain-containing protein [Frankia sp. EAN1pec] gi|158110063|gb|ABW12260.1| Radical SAM domain protein [Frankia sp. EAN1pec] Length = 243 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 24/143 (16%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 L ++ T QGEG AG+ A+F R S CNL C +CD + Sbjct: 18 LVVVERFGPTFQGEGPTAGQQALFLRLSACNL-----------SCAWCDEPHTWDR---- 62 Query: 63 GRYNVDQLADLIEEQWITG---EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117 R++VD ++ + ++ + G + V+TGGEPLLQ PL+ AL + G ++ +E Sbjct: 63 NRFDVDAHSERLSQRTLLGWALDSPVTRVVVTGGEPLLQQAALFPLVAALAQAGRQVEIE 122 Query: 118 TNGTIEPP----QGIDWICVSPK 136 TNGT+ P + ++ VSPK Sbjct: 123 TNGTVAPTAEMVEVVERFTVSPK 145 >gi|124008813|ref|ZP_01693501.1| coenzyme PQQ synthesis protein, conjectural [Microscilla marina ATCC 23134] gi|123985604|gb|EAY25489.1| coenzyme PQQ synthesis protein, conjectural [Microscilla marina ATCC 23134] Length = 250 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 84/185 (45%), Gaps = 41/185 (22%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-----------VG 56 EIF T+QGEG G+ VF R S CNL C +CDTD+ V Sbjct: 11 EIFYTIQGEGKSLGKPTVFIRSSLCNL-----------HCIWCDTDYTWNWKNTPYPHVF 59 Query: 57 IQGTKGGRYN-VDQLADLIEEQWITGEKEGRYC---VLTGGEPLLQVD--VPLIQALNKR 110 Q +Y+ +Q+ +L Q I E C VLTGGEPLLQ V L+ L K+ Sbjct: 60 DQTPGYEKYDKKEQIVELSTAQ-IIEEIAPYACKNLVLTGGEPLLQQKAWVELMAQLRKK 118 Query: 111 --GFEIAVETNGTIEPPQG----IDWICVSPK---AGCDLKIKGGQELKLVFPQVNVSPE 161 G+ VETNGT+ P ID VSPK + +KI+ E F Q SP+ Sbjct: 119 DAGYWFEVETNGTLLPSSEFDALIDQYNVSPKLENSNNSMKIREKPEAYAFFRQ---SPK 175 Query: 162 NYIGF 166 + F Sbjct: 176 AWFKF 180 >gi|160893109|ref|ZP_02073897.1| hypothetical protein CLOL250_00655 [Clostridium sp. L2-50] gi|156865192|gb|EDO58623.1| hypothetical protein CLOL250_00655 [Clostridium sp. L2-50] Length = 222 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 21/126 (16%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + + E F+++ GE AG +AVF RF+GCNL C +CDT + Sbjct: 1 MAKFKVAERFVSINGESVKAGELAVFIRFTGCNL-----------NCSYCDTKWANEADA 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP---LIQALNKRGFEIAVE 117 +++ D I+ + R LTGGEPL+Q D+ L+ A+++ ++ VE Sbjct: 50 PYEELTDEEIYDYIKRTGV------RNVTLTGGEPLIQKDIDKLLLMLAMDEE-LQVEVE 102 Query: 118 TNGTIE 123 TNG+++ Sbjct: 103 TNGSVD 108 >gi|325274586|ref|ZP_08140642.1| radical SAM domain-containing protein [Pseudomonas sp. TJI-51] gi|324100228|gb|EGB98018.1| radical SAM domain-containing protein [Pseudomonas sp. TJI-51] Length = 215 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 25/144 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 V L ++E+ + G + RY +TGGEPL Q + +PL+Q L G+E+++ET+G ++ Sbjct: 51 -VRTLDSILEQ--VAGFRP-RYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLETSGALDI 106 Query: 125 PQGIDWICVSPKAGCDLKIKGGQE 148 G D DLK G +E Sbjct: 107 A-GTD---TRVSRVVDLKTPGSEE 126 >gi|269964054|ref|ZP_06178359.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831195|gb|EEZ85349.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 226 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 92/242 (38%), Gaps = 55/242 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 LY + E+F T+QGEG G AVF R C + C +CDT +G Sbjct: 5 LYKLNEMFETIQGEGVFTGVPAVFVRLQVCPV-----------GCSWCDTKQTWYAEEEG 53 Query: 63 GRYNVDQLADLIEE-QWITGEKE------------GRYCVLTGGEPLLQVDVPLIQALNK 109 R D L + W E ++ V+TGGEP + L A + Sbjct: 54 QRQIGDILVKTEDSPTWCFASAEDIVAEYKKQGFNAKHIVITGGEPCIYDLRALTAAFEE 113 Query: 110 RGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKI--------------------KGGQE 148 G + +ET+GT E W+ VSPK K+ K + Sbjct: 114 MGCQCQIETSGTSEVVTSESTWVTVSPKVAMKGKLPVLKSALERANEIKHPVGTQKDIDQ 173 Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 L + +++ + I +LQP+ T L I C WRLSVQTHK++ Sbjct: 174 LDSLLASADIAEKTVI-------ALQPISQK--PRATQLCIDTCVAR-NWRLSVQTHKYL 223 Query: 209 GI 210 I Sbjct: 224 SI 225 >gi|167035186|ref|YP_001670417.1| radical SAM domain-containing protein [Pseudomonas putida GB-1] gi|166861674|gb|ABZ00082.1| Radical SAM domain protein [Pseudomonas putida GB-1] Length = 215 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 72/144 (50%), Gaps = 25/144 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGTL---- 51 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + D I EQ + G K RY +TGGEPL Q + +PL+Q L G+E+++ET+G ++ Sbjct: 52 ---RTLDSILEQ-VAGFKP-RYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLETSGALD- 105 Query: 125 PQGIDWICVSPKAGCDLKIKGGQE 148 I DLK G +E Sbjct: 106 ---ITGTDTRVSRVVDLKTPGSEE 126 >gi|91224504|ref|ZP_01259766.1| hypothetical protein V12G01_17742 [Vibrio alginolyticus 12G01] gi|91190846|gb|EAS77113.1| hypothetical protein V12G01_17742 [Vibrio alginolyticus 12G01] Length = 216 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 90/236 (38%), Gaps = 55/236 (23%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68 +F T+QGEG G AVF R C + C +CDT R D Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQECPV-----------GCSWCDTKQTWYADENDQRQIGD 49 Query: 69 QL-------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115 L A+ I EQ+ ++ V+TGGEP + PL +A G + Sbjct: 50 ILVKTEDSPTWCVASAENIVEQYQQQGFNAKHIVITGGEPCIYDLRPLTKAFEDMGCQCQ 109 Query: 116 VETNGTIEPPQGID-WICVSPKAGCDLKI--------------------KGGQELKLVFP 154 +ET+GT E + W+ VSPK K+ K L + Sbjct: 110 IETSGTSEVITSENTWVTVSPKVAMKGKLPVLNSALERANEIKHPVGTQKDIDHLDDLLA 169 Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NV+ E I +LQP+ T L I C WRLSVQTHK++ I Sbjct: 170 NANVAAETII-------ALQPISQK--PRATQLCIDTCIAR-NWRLSVQTHKYLSI 215 >gi|283955402|ref|ZP_06372901.1| hypothetical protein C414_000450084 [Campylobacter jejuni subsp. jejuni 414] gi|283793162|gb|EFC31932.1| hypothetical protein C414_000450084 [Campylobacter jejuni subsp. jejuni 414] Length = 254 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 66/128 (51%), Gaps = 17/128 (13%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNL------WSGREQDRLSAQCRFCDTDFVGIQGTK 61 E FL++QGEG ++G++A+F RF+GCN + D++ C D + TK Sbjct: 5 ESFLSIQGEGKYSGKLAIFMRFAGCNFNCLGFNVKILKNDKILTGC-----DTIRAVFTK 59 Query: 62 GGRYNVDQL--ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIA 115 + N + L +L++ + V+TGGEPL+ + P IQ L K FEI Sbjct: 60 DFKENYETLNANELLKRVIKLKQNFDPIIVITGGEPLIHYENPEFINFIQMLLKNKFEIH 119 Query: 116 VETNGTIE 123 E+NG+IE Sbjct: 120 FESNGSIE 127 >gi|167768058|ref|ZP_02440111.1| hypothetical protein CLOSS21_02602 [Clostridium sp. SS2/1] gi|317498354|ref|ZP_07956650.1| radical SAM superfamily protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167710387|gb|EDS20966.1| hypothetical protein CLOSS21_02602 [Clostridium sp. SS2/1] gi|291561057|emb|CBL39857.1| Organic radical activating enzymes [butyrate-producing bacterium SSC/2] gi|316894359|gb|EFV16545.1| radical SAM superfamily protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 222 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 19/124 (15%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M+ + + E F+++ GEG AGR+A+F R GCNL C +CDT + + Sbjct: 1 METFKVVETFVSINGEGKKAGRLAMFIRLKGCNL-----------NCSYCDTTWANKRDA 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVET 118 + Q+ + I+E + LTGGEPLL +V + L EI +ET Sbjct: 50 RCELLTAPQIVERIKEAGV------ELVTLTGGEPLLDENVSELIGSILMMPKVEIEIET 103 Query: 119 NGTI 122 NG++ Sbjct: 104 NGSV 107 >gi|119477238|ref|ZP_01617474.1| probable radical activating enzyme [marine gamma proteobacterium HTCC2143] gi|119449601|gb|EAW30839.1| probable radical activating enzyme [marine gamma proteobacterium HTCC2143] Length = 214 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 99/233 (42%), Gaps = 51/233 (21%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + EIF +LQGE G VF R +GC L +C +CDT++ G Sbjct: 1 MTDLRLTEIFYSLQGETRTVGLPTVFVRLTGCPL-----------RCAYCDTEYAFHGGE 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119 K I+E+ RY +TGGEPL Q + PL+ AL +G+E+++ET+ Sbjct: 50 KWS-------LQAIQEK--VASYHPRYVTVTGGEPLAQPNCWPLLTALCDQGYEVSLETS 100 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF------DFE-- 169 G I G+D V DLK E+ + ++ + +SP++ I F D+E Sbjct: 101 GAIS-LLGVDSRVVKVM---DLKTPASNEMSRNLYENIELLSPQDQIKFVICDRKDYEWA 156 Query: 170 RFSL--------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 RF L P G E+ LA N R VQ HK + Sbjct: 157 RFKLDEHRLVDRVDEVLFSPSFGQI--ESAELAEWILADNLPVRFQVQLHKLL 207 >gi|66044666|ref|YP_234507.1| radical SAM family protein [Pseudomonas syringae pv. syringae B728a] gi|63255373|gb|AAY36469.1| Radical SAM [Pseudomonas syringae pv. syringae B728a] Length = 215 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 29/148 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + L D++ + RY +TGGEPL Q + + L++ L G+E+++ET+G Sbjct: 51 -IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIALLKRLCDAGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150 +D V P+ DLK G +E+ Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEVS 128 >gi|194334507|ref|YP_002016367.1| radical SAM domain-containing protein [Prosthecochloris aestuarii DSM 271] gi|194312325|gb|ACF46720.1| Radical SAM domain protein [Prosthecochloris aestuarii DSM 271] Length = 222 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 23/117 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIFL++QGE AG VF R +GC S++C +CDT + GT Sbjct: 7 INEIFLSIQGESSRAGYPCVFVRLTGC-----------SSRCTWCDTRYAMTNGTTTSLQ 55 Query: 66 N-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 N +D +A + +TGGEPL Q +V PL+Q L RG+ + +ET G Sbjct: 56 NIIDTIAGF----------KTPLVEITGGEPLEQENVYPLMQQLCNRGYNVMLETGG 102 >gi|312898407|ref|ZP_07757797.1| radical SAM domain protein [Megasphaera micronuciformis F0359] gi|310620326|gb|EFQ03896.1| radical SAM domain protein [Megasphaera micronuciformis F0359] Length = 217 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 92/226 (40%), Gaps = 42/226 (18%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F+++ GEG AG +A+F RF GCNL C +CDT + Sbjct: 3 VVEKFVSINGEGQRAGELALFIRFQGCNL-----------SCTYCDTAWANEADCPYEEE 51 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE- 123 + ++ D + +T LTGGEPLLQ + LI L+K GF + +ETNG + Sbjct: 52 SPQEIVDYACREGVTD------ITLTGGEPLLQEGIDELIDLLSKHGFHVEIETNGAVSL 105 Query: 124 --------PPQGIDWICVSPKAGCDLKIKGGQ--------ELKLVFPQ---VNVSPENYI 164 P +D+ P +GC+ + G +K V + + E Sbjct: 106 LPFCQKRRPSFTMDYKL--PGSGCEKAMMTGNFAILTEKDTVKFVVSSTEDLQKAEEIAT 163 Query: 165 GFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 +D + F + + + Q WRL +Q HKFI Sbjct: 164 RYDLVNHCAVYISPVFGSIDPAQMVDFMKQRRLNGWRLQLQLHKFI 209 >gi|330968882|gb|EGH68948.1| radical SAM family protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 215 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 29/148 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + L D++ + RY +TGGEPL Q + + L++ L G+E+++ET+G Sbjct: 51 -IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIALLRRLCDAGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150 +D V P+ DLK G +E+ Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEVS 128 >gi|319957590|ref|YP_004168853.1| radical sam domain protein [Nitratifractor salsuginis DSM 16511] gi|319419994|gb|ADV47104.1| Radical SAM domain protein [Nitratifractor salsuginis DSM 16511] Length = 253 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 19/186 (10%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQG 59 ++ + E FL++QGEG +AG + F R GCNL G E D + CDT F + Sbjct: 1 MFWLTEKFLSIQGEGRYAGVPSYFLRTGGCNLHCPGFGAEYDVEGEKRYGCDTWFSVDRA 60 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVDVP----LIQALNKRGFE 113 V+ A L+EE + G + V+TGGEPL+ P +++ L +RG + Sbjct: 61 FAARWQAVESAAPLLEEMDRAFLEIGYLPHVVITGGEPLIYAADPAFYEVVEGLVERGVQ 120 Query: 114 IAVETNGTIEPPQGIDWICVSPKAGCDLKI------KGGQELKLVFPQVNVSPENYIGFD 167 I ETNGT+ P D++ C + G + + + P+V + + G Sbjct: 121 ITFETNGTVAP----DFLRYGAYKACTFALSVKLSNSGEPKERRIHPEVLRTIASEAGEA 176 Query: 168 FERFSL 173 F +F+L Sbjct: 177 FLKFTL 182 >gi|88604065|ref|YP_504243.1| radical SAM family protein [Methanospirillum hungatei JF-1] gi|88189527|gb|ABD42524.1| Radical SAM [Methanospirillum hungatei JF-1] Length = 234 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 101/241 (41%), Gaps = 78/241 (32%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGEG +G +F R +GCNL C +CDT +GG Sbjct: 35 IAEIFTSLQGEGLTSGYPTIFIRLAGCNL-----------SCSYCDTP----ASRQGGM- 78 Query: 66 NVDQLADLIEEQWITGE--KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121 D+ + + G ++ Y +TGGEPLLQ D L + L K G +++ETNGT Sbjct: 79 ------DMNVSEVVAGALLQKPHYVCITGGEPLLQKDEVAELARQLIKAGKMVSIETNGT 132 Query: 122 I---EPPQGIDWICVSPK-------------------------AGCDLKIKGGQELKLVF 153 + + P I IC+ K G D ++ +++ + Sbjct: 133 VPFDDLPSDIS-ICMDVKCPSSGEFSNINLLSDLKSTDSVKFVVGTDDDLQYAEKVIMSH 191 Query: 154 P---QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF-QNPKWRLSVQTHKFIG 209 P ++ +SP G D++R + SY +N R+ +Q HKFIG Sbjct: 192 PTKAEIFISP--IYGTDYQRIA-----------------SYILSRNLPARMQLQLHKFIG 232 Query: 210 I 210 + Sbjct: 233 L 233 >gi|302876981|ref|YP_003845614.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|307687672|ref|ZP_07630118.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|302579838|gb|ADL53850.1| Radical SAM domain protein [Clostridium cellulovorans 743B] Length = 220 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 107/233 (45%), Gaps = 48/233 (20%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y + E F+++ GEG AG +AVF RF GCNL +C +CDT + Sbjct: 1 MYKVVEKFVSINGEGLRAGELAVFIRFLGCNL-----------KCSYCDTKWANEPECPY 49 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRG-FEIAVETNG 120 + +++ I+E + R LTGGEPL+Q ++ LI L K G I +ETNG Sbjct: 50 ELMSGEEIYAYIKETGV------RNVTLTGGEPLIQKEMKELIDLLLKDGLLRIEIETNG 103 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN----VSPENYIGF------DFER 170 +++ Q I++ S + L KG L + + + ++ ++ + F D ER Sbjct: 104 SVDVQQ-INY--SSERVSITLDYKGKSSLMEGYMKRDSFKLLTKKDSVKFVVGDNEDLER 160 Query: 171 FSLQPMDGPFLEENTNLAISYCF------------QNPKW---RLSVQTHKFI 208 +L + L E TN+ S F +N K R+ +Q HK+I Sbjct: 161 -ALSFIKECELLEKTNVLFSCIFDKIQPAEVVEFMKNNKLIEARIQLQLHKYI 212 >gi|254506224|ref|ZP_05118367.1| organic radical activating enzyme [Vibrio parahaemolyticus 16] gi|219550704|gb|EED27686.1| organic radical activating enzyme [Vibrio parahaemolyticus 16] Length = 216 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 94/230 (40%), Gaps = 43/230 (18%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNL----------WSGREQDRLSAQCRFCDTDFVGI- 57 +F T+QGEG G +VF R C + W QD +T F I Sbjct: 1 MFETIQGEGVFTGVPSVFVRLQECPVGCAWCDTKQTWDATPQD---------ETSFSEIM 51 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + T+ A I +++ E ++ V+TGGEP + PL +A G + +E Sbjct: 52 KKTQDSPTWCQSSAQGIVDEYRNQEYTAKHIVITGGEPCIYDLTPLTEAFEAIGCQCQIE 111 Query: 118 TNGTIEPPQGID--WICVSPKAGC-------DLKIKGGQELKLVFPQVNVSPENYIGFDF 168 T+GT E + D W+ VSPK D + E+K P + + Sbjct: 112 TSGTSEV-RATDNTWVTVSPKVAMKGKLPVLDSALVRANEIK--HPVATQKDIDQLDELL 168 Query: 169 ER--------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ER +LQP+ T L I C + WRLS+QTHK++ I Sbjct: 169 ERAKVPETTVVALQPISQK--PRATQLCIDVCVKR-NWRLSIQTHKYLSI 215 >gi|304312904|ref|YP_003812502.1| Putative radical activating enzyme [gamma proteobacterium HdN1] gi|301798637|emb|CBL46869.1| Putative radical activating enzyme [gamma proteobacterium HdN1] Length = 218 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 25/146 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G VF R +GC L +C++CDT + + G + Sbjct: 10 ITEIFHSLQGETRTLGLPTVFVRLTGCPL-----------RCQYCDTAYAF---SGGQQM 55 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 +++Q+ + + Y +TGGEPL Q + +PL+QAL +G+E+++ET+G ++ Sbjct: 56 SLEQILETV------AGFRTHYVTVTGGEPLAQPNCIPLLQALCDQGYEVSLETSGALD- 108 Query: 125 PQGIDWICVSPKAGCDLKIKGGQELK 150 I I DLK G E+ Sbjct: 109 ---ISEIDARVVRVVDLKTPGSGEMH 131 >gi|262375547|ref|ZP_06068780.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Acinetobacter lwoffii SH145] gi|262309801|gb|EEY90931.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Acinetobacter lwoffii SH145] Length = 236 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C +CDT + +G G R Sbjct: 20 ITEIFYSLQGEANAAGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERQ 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 ++D D+I+ T + + Y +TGGEPL Q + +PL+Q L G E+++ET+G ++ Sbjct: 66 SLD---DIIQ---TTLDFKTPYVCVTGGEPLAQPNALPLMQRLADLGCEVSLETSGALD 118 >gi|87311106|ref|ZP_01093230.1| hypothetical protein DSM3645_18841 [Blastopirellula marina DSM 3645] gi|87286197|gb|EAQ78107.1| hypothetical protein DSM3645_18841 [Blastopirellula marina DSM 3645] Length = 228 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 19/132 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EI+ ++QGEG G + F R SGCNL +C FCDT + +G Sbjct: 3 IAEIYRSIQGEGALTGVTSTFVRASGCNL-----------RCWFCDTPHASWK-PEGEDL 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 +V ++ I + + VLTGGEP+L + +PL + ++ G I +ET GT+ Sbjct: 51 SVAEILGRI------ALLDCDHVVLTGGEPMLFAEMIPLCEGIHVAGRHITIETAGTLYL 104 Query: 125 PQGIDWICVSPK 136 P D + +SPK Sbjct: 105 PLTCDVMSISPK 116 >gi|124027076|ref|YP_001012396.1| organic radical activating protein NrdG [Hyperthermus butylicus DSM 5456] gi|123977770|gb|ABM80051.1| Organic radical activating enzyme, NrdG [Hyperthermus butylicus DSM 5456] Length = 235 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 26/149 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E+F ++QGEG G +VF R +GCNL +C FCDT + G Sbjct: 18 VVEVFASIQGEGPFTGTYSVFVRLAGCNL-----------RCPFCDTRY-AWSLEAGKPL 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE 123 V++L + I E V+TGGEPLLQ L++ L G + +ETNG + Sbjct: 66 GVEELVEEI------ARYEPSLVVITGGEPLLQRHPLNSLVEGLESLGLRVQLETNGILP 119 Query: 124 PPQGID-----WICVSPKAGCDLKIKGGQ 147 P + + VSPK +++ G + Sbjct: 120 APARDEQLWRVYHVVSPK-DVPVRVPGAK 147 >gi|237668046|ref|ZP_04528030.1| radical SAM domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|237656394|gb|EEP53950.1| radical SAM domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 222 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 19/123 (15%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +++I E FL++ GEG +G +A F RF GCNL +C +CDT + + Sbjct: 1 MFNIIEKFLSVDGEGPSSGELATFIRFQGCNL-----------RCSWCDTVYSWQKENIN 49 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 R N ++ D I+ + LTGGEPL+Q ++ L + I +ETNG Sbjct: 50 ERLNAKEIYDYIKSNKVNN------VTLTGGEPLIQKNIDELLRLLDDDSNLNIHIETNG 103 Query: 121 TIE 123 +I+ Sbjct: 104 SID 106 >gi|182416803|ref|ZP_02948194.1| Fe-S oxidoreductase of MoaA family [Clostridium butyricum 5521] gi|182379265|gb|EDT76764.1| Fe-S oxidoreductase of MoaA family [Clostridium butyricum 5521] Length = 222 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 19/123 (15%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +++I E FL++ GEG +G +A F RF GCNL +C +CDT + + Sbjct: 1 MFNIIEKFLSVDGEGPSSGELATFIRFQGCNL-----------RCSWCDTVYSWQKENIN 49 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 R N ++ D I+ + LTGGEPL+Q ++ L + I +ETNG Sbjct: 50 ERLNAKEIYDYIKSNKVNN------VTLTGGEPLIQKNIDELLRLLDDDSNLNIHIETNG 103 Query: 121 TIE 123 +I+ Sbjct: 104 SID 106 >gi|152987293|ref|YP_001349882.1| radical activating enzyme [Pseudomonas aeruginosa PA7] gi|150962451|gb|ABR84476.1| probable radical activating enzyme [Pseudomonas aeruginosa PA7] Length = 215 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C +CDT + GG Sbjct: 7 ITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAY----AFSGG-- 49 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + L ++E + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 50 EIVSLDAILER---VAAYKPRYICVTGGEPLAQPNCIPLLERLCDAGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 +D V P+ DLK G E+ Sbjct: 103 --ALDVSRVDPRVSKVLDLKTPGSGEV 127 >gi|153940843|ref|YP_001390900.1| radical SAM domain-containing protein [Clostridium botulinum F str. Langeland] gi|152936739|gb|ABS42237.1| radical SAM domain protein [Clostridium botulinum F str. Langeland] gi|295318962|gb|ADF99339.1| radical SAM domain protein [Clostridium botulinum F str. 230613] Length = 221 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 20/142 (14%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + E F+++ GEG G++A+F RF+GCNL C +CDT + K Sbjct: 3 FKVVESFISINGEGRRCGQLAIFIRFAGCNL-----------NCSYCDTLWA---NEKDV 48 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFEIAVETNGT 121 Y V D+ E KE + LTGGEPLLQ + L++ L+K + + +ETNG+ Sbjct: 49 PYEVLSSKDIYE---YIKSKEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105 Query: 122 IEPPQGIDWICVSPKAGCDLKI 143 I + ++ I SP D K+ Sbjct: 106 ILLDEFLN-IENSPSFTMDYKL 126 >gi|85860085|ref|YP_462287.1| queuosine biosynthesis protein [Syntrophus aciditrophicus SB] gi|85723176|gb|ABC78119.1| queuosine biosynthesis protein [Syntrophus aciditrophicus SB] Length = 215 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 28/132 (21%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF ++QGE G VF R +GCNL +C +CDT + +GT + Sbjct: 5 VNEIFYSIQGESSFIGIPCVFVRLTGCNL-----------RCSYCDTRYAYEEGTL---W 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVL---TGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 ++ + D I +C L TGGEPL+Q + P LI+ L RG + +ETNG+ Sbjct: 51 DIPDILDRISSY---------HCPLVEITGGEPLIQKETPLLIRDLLDRGCHVLLETNGS 101 Query: 122 IEPPQGIDWICV 133 P + ID CV Sbjct: 102 -RPIRTIDERCV 112 >gi|329893688|ref|ZP_08269822.1| Queuosine Biosynthesis QueE Radical SAM [gamma proteobacterium IMCC3088] gi|328923615|gb|EGG30927.1| Queuosine Biosynthesis QueE Radical SAM [gamma proteobacterium IMCC3088] Length = 230 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 21/118 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G VF R +GC L +C +CDT++ GT+ Sbjct: 22 ISEIFYSLQGETRTLGLPTVFIRLTGCPL-----------RCVYCDTEYAFHGGTQIA-- 68 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 L D++E+ R+ +TGGEPL Q + PL+Q L G+E+++ET+G + Sbjct: 69 ----LGDILEQ---AAAFNTRFVTVTGGEPLAQPNCWPLLQMLCDEGYEVSLETSGAL 119 >gi|209525918|ref|ZP_03274452.1| Radical SAM domain protein [Arthrospira maxima CS-328] gi|209493595|gb|EDZ93916.1| Radical SAM domain protein [Arthrospira maxima CS-328] Length = 204 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 96/215 (44%), Gaps = 40/215 (18%) Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71 T+QGEG AG F R +GC + C +CDT + G KG N+ Sbjct: 13 TIQGEGYWAGTPVDFIRLAGCPV-----------GCPWCDTGYA--DGGKGLPRNMRSFD 59 Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI-EPPQGID 129 +L+ E V++GGEP + +P L++ L + G ++++ET+G + + Sbjct: 60 ELL------AELVSPRVVISGGEPFIYPQLPDLVRVLEETGRQVSIETSGAFWQDVSDLC 113 Query: 130 WICVSPKAGCDLKI-------KGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL- 181 WI +SPK + + E+KLV ++V E + F R + FL Sbjct: 114 WITLSPKEHISPRYPVVSQMWRRASEIKLV---IDVGDE--LEFYRSRLAENSTIPVFLQ 168 Query: 182 ------EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + L ++ Q P +RLSVQ HK+IG+ Sbjct: 169 PQWTDIDRTLPLVLAKLKQFPGYRLSVQLHKYIGV 203 >gi|170758709|ref|YP_001786976.1| radical SAM domain-containing protein [Clostridium botulinum A3 str. Loch Maree] gi|169405698|gb|ACA54109.1| radical SAM domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 221 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 20/142 (14%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + E F+++ GEG G++A+F RF+GCNL C +CDT + K Sbjct: 3 FKVAERFVSINGEGRRCGQLAIFIRFAGCNL-----------NCSYCDTLWA---NEKDV 48 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFEIAVETNGT 121 Y V D+ E KE + LTGGEPLLQ + L++ L+K + + +ETNG+ Sbjct: 49 PYEVLSSKDIYE---YIKSKEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105 Query: 122 IEPPQGIDWICVSPKAGCDLKI 143 I + ++ I SP D K+ Sbjct: 106 ILLDEFLN-IENSPSFTMDYKL 126 >gi|170756011|ref|YP_001781191.1| radical SAM domain-containing protein [Clostridium botulinum B1 str. Okra] gi|169121223|gb|ACA45059.1| radical SAM domain protein [Clostridium botulinum B1 str. Okra] Length = 221 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 20/142 (14%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + E F+++ GEG G++A+F RF+GCNL C +CDT + K Sbjct: 3 FKVVESFVSINGEGRRCGQLAIFIRFAGCNL-----------NCSYCDTLWA---NEKDV 48 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFEIAVETNGT 121 Y V D+ E KE + LTGGEPLLQ + L++ L+K + + +ETNG+ Sbjct: 49 PYEVLSSKDIYE---YIKSKEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105 Query: 122 IEPPQGIDWICVSPKAGCDLKI 143 I + ++ I SP D K+ Sbjct: 106 ILLDEFLN-IENSPSFTMDYKL 126 >gi|254282112|ref|ZP_04957080.1| radical SAM domain protein [gamma proteobacterium NOR51-B] gi|219678315|gb|EED34664.1| radical SAM domain protein [gamma proteobacterium NOR51-B] Length = 217 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 98/236 (41%), Gaps = 67/236 (28%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G VF R +GC L +C +CDT + GG Sbjct: 9 ITEIFHSLQGEARTVGLPTVFVRLTGCPL-----------RCVYCDTAY----AFSGGEL 53 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 L D++E + G R CV TGGEPL Q + + L+ AL RG+++++ET+G + Sbjct: 54 TT--LDDILER--VAGFSCTRVCV-TGGEPLAQPECLSLLTALCDRGYDVSLETSGAM-- 106 Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQV------------NVSPENYIGF------ 166 P AG D ++ +LK P ++P + I F Sbjct: 107 ----------PIAGADTRVSRVLDLKT--PDSGECHRNDWSNIEQLTPHDQIKFVVCSRT 154 Query: 167 DFE--RFSLQPMDGPFLEENTNLAISYCFQNP----KW--------RLSVQTHKFI 208 D+E RF L P + + SY P +W RL +Q HK + Sbjct: 155 DYEWARFKLDEFKLPTRVSDVLFSPSYGVVEPAELAQWLLDDRLAARLQLQLHKLL 210 >gi|258627553|ref|ZP_05722330.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258580135|gb|EEW05107.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 216 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 91/221 (41%), Gaps = 25/221 (11%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 +F T+QGEG G AVF R GC + W +Q + + + ++ + + Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLESDQTSFPQILLKTSDAPTW 60 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP- 124 D+IE G + ++ V+TGGEP + L QA G + +ET+GT E Sbjct: 61 CQASAQDVIERYRAQG-YQAKHIVITGGEPCIYDLTELTQAFEAIGCQCQIETSGTYEIL 119 Query: 125 PQGIDWICVSPKAG-------CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS----- 172 W+ VSPK D ++ E+K P + + R S Sbjct: 120 ATPTTWVTVSPKVAMKGKLLILDSALQRANEIK--HPVATEKDIDNLDELLVRASVDTKT 177 Query: 173 ---LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP+ T L I C WRLS+QTHK++ I Sbjct: 178 VIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215 >gi|262368582|ref|ZP_06061911.1| radical SAM domain-containing protein [Acinetobacter johnsonii SH046] gi|262316260|gb|EEY97298.1| radical SAM domain-containing protein [Acinetobacter johnsonii SH046] Length = 236 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE +G VF R +GC L +C +CDT + +G G R Sbjct: 20 ITEIFYSLQGEANTSGLPTVFIRLTGCPL-----------RCTYCDTTY-SFEG--GERQ 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 ++DQ+ T + + Y +TGGEPL Q + +PL+Q L G E+++ET+G ++ Sbjct: 66 SLDQIIQ------TTLDFKTPYVCVTGGEPLAQPNALPLMQRLADLGCEVSLETSGALD 118 >gi|327481488|gb|AEA84798.1| radical activating enzyme [Pseudomonas stutzeri DSM 4166] Length = 224 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE +G VF R +GC L +C++CDT + GG Sbjct: 16 ITEIFYSLQGETRTSGLPTVFVRLTGCPL-----------RCQYCDTAY----AFSGGEL 60 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 D I E+ RY +TGGEPL Q + VPL+Q L G+E+++ET+G ++ Sbjct: 61 ---MALDAILER--VAAYNPRYVCVTGGEPLAQPNCVPLLQRLCDAGYEVSLETSGALD 114 >gi|300112861|ref|YP_003759436.1| radical SAM domain-containing protein [Nitrosococcus watsonii C-113] gi|299538798|gb|ADJ27115.1| Radical SAM domain protein [Nitrosococcus watsonii C-113] Length = 213 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 21/124 (16%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK I EIF +LQGE G F R +GC L +C +CDT++ QG Sbjct: 1 MKRLRITEIFYSLQGEARSVGWPTAFVRLTGCPL-----------RCHYCDTEY-AFQG- 47 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119 G +D++ D++ E + R+ +TGGEPL+Q + L+ L G+E+++ET+ Sbjct: 48 -GNWMALDRILDVVAEFGV------RHVTVTGGEPLVQSACLELLTRLCDAGYEVSLETS 100 Query: 120 GTIE 123 G ++ Sbjct: 101 GALD 104 >gi|227498703|ref|ZP_03928847.1| radical SAM family protein [Acidaminococcus sp. D21] gi|226904159|gb|EEH90077.1| radical SAM family protein [Acidaminococcus sp. D21] Length = 222 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 25/122 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + EIF ++ GEG G +A F RF+GCNL +C +CDT + Sbjct: 10 FPVVEIFDSIDGEGKRTGYMATFVRFAGCNL-----------RCSYCDTAYA-------- 50 Query: 64 RYNVDQLADLIEE----QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 ++ Q + + E Q IT R LTGGEP+LQ L + L G+E+ +ETN Sbjct: 51 -WDASQAKEWLSEDNLFQQITAYPWKR-VTLTGGEPMLQPIETLCRRLGDAGYEVNIETN 108 Query: 120 GT 121 G Sbjct: 109 GA 110 >gi|225848024|ref|YP_002728187.1| organic radical activating enzyme [Sulfurihydrogenibium azorense Az-Fu1] gi|225644046|gb|ACN99096.1| organic radical activating enzyme [Sulfurihydrogenibium azorense Az-Fu1] Length = 217 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 32/177 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + EIF T++GEG G VF R GCNL +C +CDT + G Sbjct: 10 FKVVEIFRTVEGEGRWVGLPVVFIRLEGCNL-----------RCSWCDTTY----SYDGK 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 Y V L ++++E ++ R C+ TGGEP L ++ L+++L + + +ETNGT+ Sbjct: 55 TYTVKTLEEILKE--VSTYNLKRVCI-TGGEPFLTSNLDILVKSLLDEDYYVFIETNGTL 111 Query: 123 EPPQGID------WICVSPK-----AGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 + D +I SPK DL I +ELK V + N+S + I DF Sbjct: 112 WNERFKDLNLDRLYITCSPKPPFYFVNKDL-IPYIKELKFVVDE-NLSLNHIIKPDF 166 >gi|148379522|ref|YP_001254063.1| radical SAM domain protein [Clostridium botulinum A str. ATCC 3502] gi|153934167|ref|YP_001383899.1| radical SAM domain-containing protein [Clostridium botulinum A str. ATCC 19397] gi|153937587|ref|YP_001387447.1| radical SAM domain-containing protein [Clostridium botulinum A str. Hall] gi|226948886|ref|YP_002803977.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto] gi|148289006|emb|CAL83095.1| putative radical SAM-superfamily protein [Clostridium botulinum A str. ATCC 3502] gi|152930211|gb|ABS35711.1| radical SAM domain protein [Clostridium botulinum A str. ATCC 19397] gi|152933501|gb|ABS39000.1| radical SAM domain protein [Clostridium botulinum A str. Hall] gi|226841117|gb|ACO83783.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto] Length = 221 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 20/142 (14%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + E F+++ GEG G++A+F RF+GCNL C +CDT + K Sbjct: 3 FKVVERFVSINGEGRRCGQLAIFIRFAGCNL-----------NCSYCDTLWA---NEKDV 48 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFEIAVETNGT 121 Y V D+ E KE + LTGGEPLLQ + L++ L+K + + +ETNG+ Sbjct: 49 PYEVLSSKDIYE---YIKSKEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105 Query: 122 IEPPQGIDWICVSPKAGCDLKI 143 I + ++ I SP D K+ Sbjct: 106 ILLDEFLN-IENSPSFTMDYKL 126 >gi|146283135|ref|YP_001173288.1| radical activating enzyme [Pseudomonas stutzeri A1501] gi|145571340|gb|ABP80446.1| probable radical activating enzyme [Pseudomonas stutzeri A1501] Length = 213 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE +G VF R +GC L +C++CDT + GG Sbjct: 5 ITEIFYSLQGETRTSGLPTVFVRLTGCPL-----------RCQYCDTAY----AFSGGEL 49 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 D I E+ RY +TGGEPL Q + VPL+Q L G+E+++ET+G ++ Sbjct: 50 ---MALDAILER--VAAYNPRYVCVTGGEPLAQPNCVPLLQRLCDAGYEVSLETSGALD 103 >gi|86151465|ref|ZP_01069680.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni 260.94] gi|315123765|ref|YP_004065769.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841812|gb|EAQ59059.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni 260.94] gi|315017487|gb|ADT65580.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 247 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 7/123 (5%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF---CDTDFVGIQGTKGGR 64 E FL++QGEG + G++A+F RF+GCN ++S + CDT Sbjct: 5 ESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFKES 64 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNG 120 Y +L++ + V+TGGEPL+ + P IQ L K FEI E+NG Sbjct: 65 YETLNANELLKRVIKLKQDFNPIVVITGGEPLIHYENPEFIKFIQMLLKNKFEIHFESNG 124 Query: 121 TIE 123 +IE Sbjct: 125 SIE 127 >gi|167747133|ref|ZP_02419260.1| hypothetical protein ANACAC_01846 [Anaerostipes caccae DSM 14662] gi|167654093|gb|EDR98222.1| hypothetical protein ANACAC_01846 [Anaerostipes caccae DSM 14662] Length = 222 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 19/124 (15%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M+++ I E F+++ GEG AGR+++F R GCNL C +CDT + + Sbjct: 1 MEVFKIAESFVSINGEGKKAGRLSMFIRLRGCNL-----------NCSYCDTKWAISKKG 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LI-QALNKRGFEIAVET 118 + +++ +++E + LTGGEPLL ++ LI L+ E+ +ET Sbjct: 50 EAELMTAAEVSQMVKESGVD------LVTLTGGEPLLDENISGLIGSILSLPKMELEIET 103 Query: 119 NGTI 122 NG+I Sbjct: 104 NGSI 107 >gi|53804445|ref|YP_113696.1| radical activating enzyme family protein [Methylococcus capsulatus str. Bath] gi|53758206|gb|AAU92497.1| radical activating enzyme family protein [Methylococcus capsulatus str. Bath] Length = 215 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 21/120 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 L I EIF +LQGE G VF R +GC L +C +CDT + G + Sbjct: 5 LVRITEIFFSLQGETRTVGLPTVFVRLTGCPL-----------RCSYCDTAYAFSGGERM 53 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGT 121 +A+++E G RY +TGGEPL Q +PL+ AL G+++++ET G Sbjct: 54 ------SIAEIVER---VGRYGARYVTVTGGEPLAQKACLPLLTALCDEGYQVSLETGGA 104 >gi|116749416|ref|YP_846103.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116698480|gb|ABK17668.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB] Length = 215 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/122 (36%), Positives = 61/122 (50%), Gaps = 27/122 (22%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF ++QGE G+AG VF R +GCNL +C +CDT RY Sbjct: 5 VNEIFHSIQGESGYAGWPCVFVRLTGCNL-----------RCSYCDT-----------RY 42 Query: 66 NVDQLADLIEEQWITGEKEGRYCVL---TGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 D+ D + + I G C L TGGEPLLQ + P L+ L G + VETNG+ Sbjct: 43 AYDE-GDFVTLREIIGRVRRFDCPLVEITGGEPLLQPETPELVAELLDLGHTVLVETNGS 101 Query: 122 IE 123 ++ Sbjct: 102 MD 103 >gi|86153735|ref|ZP_01071938.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613080|ref|YP_999885.1| radical SAM domain-containing protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167004851|ref|ZP_02270609.1| hypothetical protein Cjejjejuni_00920 [Campylobacter jejuni subsp. jejuni 81-176] gi|85842696|gb|EAQ59908.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250333|gb|EAQ73291.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni 81-176] Length = 247 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 7/123 (5%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF---CDTDFVGIQGTKGGR 64 E FL++QGEG + G++A+F RF+GCN ++S + CDT Sbjct: 5 ESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFKES 64 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNG 120 Y +L++ + V+TGGEPL+ + P IQ L K FEI E+NG Sbjct: 65 YETLNANELLKRVIKLKQDFNPIVVITGGEPLIHYENPEFIKFIQMLLKNKFEIHFESNG 124 Query: 121 TIE 123 +IE Sbjct: 125 SIE 127 >gi|330896138|gb|EGH28359.1| radical SAM family protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 215 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 29/148 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTAGLPTVFVRLTGCPF-----------RCQYCDSAYAFSGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + L D++ + RY +TGGEPL Q + + L++ L G+E+++ET+G Sbjct: 51 -IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIALLKRLCDAGYEVSLETSG---- 102 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150 +D V P+ DLK G +E+ Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEVS 128 >gi|283955607|ref|ZP_06373100.1| LOW QUALITY PROTEIN: radical SAM domain protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792832|gb|EFC31608.1| LOW QUALITY PROTEIN: radical SAM domain protein [Campylobacter jejuni subsp. jejuni 1336] Length = 247 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 7/123 (5%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF---CDTDFVGIQGTKGGR 64 E FL++QGEG + G++A+F RF+GCN ++S + CDT Sbjct: 5 ESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNNKTLIGCDTMRAVFTKDFKES 64 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNG 120 Y +L++ + V+TGGEPL+ + P IQ L K FEI E+NG Sbjct: 65 YETLNANELLKRVIKLKQGFNPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFESNG 124 Query: 121 TIE 123 +IE Sbjct: 125 SIE 127 >gi|325283487|ref|YP_004256028.1| Radical SAM domain-containing protein [Deinococcus proteolyticus MRP] gi|324315296|gb|ADY26411.1| Radical SAM domain protein [Deinococcus proteolyticus MRP] Length = 285 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 63/138 (45%), Gaps = 22/138 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + E F T QGEG H GR A F R GC C +CD+ GT Sbjct: 58 YPVYERFYTWQGEGVHLGRAAYFIRLYGC-----------PQHCPWCDS-----AGTWHP 101 Query: 64 RYNVDQ--LADLIEEQWITGEKE--GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 Y + L D + G ++TGGEP+L PL AL+ G + +ET+ Sbjct: 102 EYRPESVGLMDAQALADAVAAESPAGAVVIITGGEPILFDLAPLTDALHAIGRRVHIETS 161 Query: 120 GTIEPPQG-IDWICVSPK 136 G I P +G +DW+ +SPK Sbjct: 162 G-IAPLRGELDWVTLSPK 178 >gi|193215257|ref|YP_001996456.1| radical SAM domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193088734|gb|ACF14009.1| Radical SAM domain protein [Chloroherpeton thalassium ATCC 35110] Length = 219 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 21/119 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + EIF ++QGE AG VF R SGC+L +C +CDT + G + Sbjct: 1 MLKVNEIFHSIQGESSKAGWPCVFIRLSGCDL-----------RCSYCDTGYAFFDGKEF 49 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 + +++E+ + R +TGGEPLLQ +V PL+ AL + G+E+ +ET G Sbjct: 50 SQ------EEILEQ---VAFYKTRLVEITGGEPLLQPNVYPLMTALCEAGYEVLLETGG 99 >gi|118443804|ref|YP_878458.1| MoaA family Fe-S oxidoreductase [Clostridium novyi NT] gi|118134260|gb|ABK61304.1| Fe-S oxidoreductase of MoaA family CAC3625 [Clostridium novyi NT] Length = 222 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 19/142 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + E F+++ GEG +G+++VF RF+GCNL C +CDT + + Sbjct: 3 YKVVEKFISINGEGKSSGQLSVFIRFAGCNL-----------NCSYCDTKWA---NEEKA 48 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL--NKRGFEIAVETNGT 121 Y++ ++ E +T E + LTGGEPLLQ + + L + I +ETNG+ Sbjct: 49 PYSIMTEKEIYEYIKLT---EIKNVTLTGGEPLLQEGILTLLKLLCSDENLNIEIETNGS 105 Query: 122 IEPPQGIDWICVSPKAGCDLKI 143 I PK D K+ Sbjct: 106 IPLKDFTSIKNNPPKFTMDYKL 127 >gi|86149669|ref|ZP_01067899.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597314|ref|ZP_01100549.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni 84-25] gi|218561841|ref|YP_002343620.1| putative radical SAM domain protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839937|gb|EAQ57196.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190375|gb|EAQ94349.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112359547|emb|CAL34331.1| putative radical SAM domain protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315927801|gb|EFV07127.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315928774|gb|EFV08047.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni 305] Length = 247 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 11/125 (8%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF---CDTDFVGIQGTKGGR 64 E FL++QGEG + G++A+F RF+GCN ++S + CDT + TK + Sbjct: 5 ESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDT--IRAVFTKDFK 62 Query: 65 YNVDQL-ADLIEEQWITGEKE-GRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118 + + L A+ + ++ I +K+ V+TGGEPL+ + P IQ L K FEI E+ Sbjct: 63 ESYETLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFES 122 Query: 119 NGTIE 123 NG+IE Sbjct: 123 NGSIE 127 >gi|284050732|ref|ZP_06380942.1| hypothetical protein AplaP_04589 [Arthrospira platensis str. Paraca] gi|291570892|dbj|BAI93164.1| possible organic radical activating enzyme [Arthrospira platensis NIES-39] Length = 204 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 36/214 (16%) Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71 T+QGEG AG F R +GC + C +CDT + G KG NV Sbjct: 13 TIQGEGYWAGTPVDFIRLAGCPV-----------GCPWCDTGYA--DGGKGLPRNVRSFD 59 Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI-EPPQGID 129 L+ E V++GGEP + +P L++ L G ++++ET+G + + Sbjct: 60 QLL------AELVSPRVVISGGEPFIYPQLPDLVRVLEDSGRQVSIETSGAFWQDVSDLC 113 Query: 130 WICVSPKAG-------CDLKIKGGQELKLVFPQVNVSPE-NYIGFDFERFSLQPM----D 177 WI +SPK + E+KLV ++V E + G S P+ Sbjct: 114 WITLSPKEHISPGYPVVSPMWRRASEIKLV---IDVGDELEFYGCRLAENSTIPVFLQPQ 170 Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +E L + Q P +RLSVQ HK+IG++ Sbjct: 171 WTDIERTLPLVLEKLKQFPGYRLSVQLHKYIGVQ 204 >gi|330502228|ref|YP_004379097.1| radical SAM domain-containing protein [Pseudomonas mendocina NK-01] gi|328916514|gb|AEB57345.1| radical SAM domain-containing protein [Pseudomonas mendocina NK-01] Length = 226 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 29/148 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CDT + + G Sbjct: 18 ITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDTAYA---FSGGEIV 63 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 +D++ D + Y +TGGEPL Q + + L+ L G+E+++ET+G Sbjct: 64 TLDRILDQV------AAYRPHYVCVTGGEPLAQPNCISLLTRLCDAGYEVSLETSG---- 113 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150 +D V P+ DLK G E++ Sbjct: 114 --ALDVAAVDPRVSKVLDLKTPGSAEVQ 139 >gi|57237168|ref|YP_178180.1| radical SAM domain-containing protein [Campylobacter jejuni RM1221] gi|57165972|gb|AAW34751.1| radical SAM domain protein [Campylobacter jejuni RM1221] gi|284925453|gb|ADC27805.1| radical SAM domain-containing protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315057600|gb|ADT71929.1| Queuosine Biosynthesis QueE Radical SAM [Campylobacter jejuni subsp. jejuni S3] Length = 247 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 11/125 (8%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF---CDTDFVGIQGTKGGR 64 E FL++QGEG + G++A+F RF+GCN ++S + CDT + TK + Sbjct: 5 ESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDT--IRAVFTKDFK 62 Query: 65 YNVDQL-ADLIEEQWITGEKE-GRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118 + + L A+ + ++ I +K+ V+TGGEPL+ + P IQ L K FEI E+ Sbjct: 63 ESYETLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFES 122 Query: 119 NGTIE 123 NG+IE Sbjct: 123 NGSIE 127 >gi|260556563|ref|ZP_05828781.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Acinetobacter baumannii ATCC 19606] gi|260409822|gb|EEX03122.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Acinetobacter baumannii ATCC 19606] Length = 236 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 33/167 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE +G VF R +GC L +C +CDT + +G G R Sbjct: 20 ITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERL 65 Query: 66 NVDQLADLIEEQWITGEK-EGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 +++ + + T EK + Y +TGGEPL Q + + L+Q L GF++++ET+G Sbjct: 66 SLEHIIE-------TAEKYQTPYICVTGGEPLAQPNCLILLQGLCDAGFDVSLETSG--- 115 Query: 124 PPQGIDWICVSPKAGCDLKIK----GGQELKLVFPQVNVSPENYIGF 166 +D V P+ L +K G + L+ +++P + I F Sbjct: 116 ---ALDVSRVDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKF 159 >gi|157414477|ref|YP_001481733.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni 81116] gi|157385441|gb|ABV51756.1| hypothetical protein C8J_0157 [Campylobacter jejuni subsp. jejuni 81116] gi|307747120|gb|ADN90390.1| Radical SAM domain protein [Campylobacter jejuni subsp. jejuni M1] gi|315931973|gb|EFV10926.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni 327] Length = 247 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 7/123 (5%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF---CDTDFVGIQGTKGGR 64 E FL++QGEG + G++A+F RF+GCN ++S + CDT Sbjct: 5 ESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFKES 64 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNG 120 Y +L++ + V+TGGEPL+ + P IQ L K FEI E+NG Sbjct: 65 YETLNANELLKRVIKLKQDFDPIVVITGGEPLIHYENPEFIKFIQMLLKNKFEIHFESNG 124 Query: 121 TIE 123 +IE Sbjct: 125 SIE 127 >gi|116048900|ref|YP_792299.1| radical activating enzyme [Pseudomonas aeruginosa UCBPP-PA14] gi|115584121|gb|ABJ10136.1| probable radical activating enzyme [Pseudomonas aeruginosa UCBPP-PA14] Length = 264 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C +CDT + GG Sbjct: 56 ITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAY----AFSGG-- 98 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 +V L ++E + RY +TGGEPL Q + + L++ L G+E+++ET+G Sbjct: 99 DVVSLDAILER---VATYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG---- 151 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 +D V P+ DLK G E+ Sbjct: 152 --ALDVSRVDPRVSKVLDLKTPGSGEV 176 >gi|254674031|emb|CBA09815.1| conserved hypothetical protein [Neisseria meningitidis alpha275] Length = 208 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 93/217 (42%), Gaps = 48/217 (22%) Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73 + + G G AVF R CNL C +CDTD++ + + L+D+ Sbjct: 19 KAKAGTRGMPAVFVRLGKCNL-----------ACGWCDTDYL--------TFGMMSLSDI 59 Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWIC 132 + R ++TGGEP +Q + L+ L G+ + +ETNG P ID++ Sbjct: 60 LG---CLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLNPAPPQIDYVA 116 Query: 133 VSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER------FSLQP--MD 177 SPKA K I+ E+++ V+ + + F + ER + L P D Sbjct: 117 TSPKACYAAKYENSCIETADEVRI------VADGDVLAFCENMERKIRAHHYYLSPCEQD 170 Query: 178 GPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210 G +T I P W+LSVQTHK+ GI Sbjct: 171 GAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGI 207 >gi|168180208|ref|ZP_02614872.1| radical SAM domain protein [Clostridium botulinum NCTC 2916] gi|182669011|gb|EDT80987.1| radical SAM domain protein [Clostridium botulinum NCTC 2916] Length = 221 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 20/142 (14%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + E F+++ GEG G++A+F RF+GCNL C +CDT + K Sbjct: 3 FKVVERFVSINGEGRCCGQLAIFIRFAGCNL-----------NCSYCDTLWA---NEKDV 48 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFEIAVETNGT 121 Y V D+ E KE + LTGGEPLLQ + L++ L+K + + +ETNG+ Sbjct: 49 SYEVLSSKDIYE---YVKSKEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105 Query: 122 IEPPQGIDWICVSPKAGCDLKI 143 I + ++ I SP D K+ Sbjct: 106 ILLDEFLN-IENSPSFTMDYKL 126 >gi|148926329|ref|ZP_01810013.1| hypothetical protein Cj8486_0156c [Campylobacter jejuni subsp. jejuni CG8486] gi|145844721|gb|EDK21826.1| hypothetical protein Cj8486_0156c [Campylobacter jejuni subsp. jejuni CG8486] Length = 247 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 7/123 (5%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF---CDTDFVGIQGTKGGR 64 E FL++QGEG + G++A+F RF+GCN ++S + CDT Sbjct: 5 ESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFKES 64 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNG 120 Y +L++ + V+TGGEPL+ + P IQ L K FEI E+NG Sbjct: 65 YKTLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFESNG 124 Query: 121 TIE 123 +IE Sbjct: 125 SIE 127 >gi|153951290|ref|YP_001397418.1| radical SAM domain-containing protein [Campylobacter jejuni subsp. doylei 269.97] gi|152938736|gb|ABS43477.1| radical SAM domain protein [Campylobacter jejuni subsp. doylei 269.97] Length = 247 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 11/125 (8%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF---CDTDFVGIQGTKGGR 64 E FL++QGEG + G++A+F RF+GCN ++S + CDT + TK + Sbjct: 5 ESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDT--IRAVFTKDFK 62 Query: 65 YNVDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118 + + L+ + + K+G V+TGGEPL+ + P IQ L K FEI E+ Sbjct: 63 ESYETLSTNELLKRVIKLKQGFNPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFES 122 Query: 119 NGTIE 123 NG+IE Sbjct: 123 NGSIE 127 >gi|145635038|ref|ZP_01790744.1| predicted organic radical activating enzyme [Haemophilus influenzae PittAA] gi|145267646|gb|EDK07644.1| predicted organic radical activating enzyme [Haemophilus influenzae PittAA] Length = 181 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 90/200 (45%), Gaps = 35/200 (17%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +VF RF CNL C +CDT + + R++V Q+ + + Sbjct: 3 SVFVRFGKCNL-----------DCPWCDTPYNNFK-----RWSVSQILEKVRSF------ 40 Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 + ++TGGEP + + L++ G+ +A+ETNG P ID+I SPK+ K Sbjct: 41 SSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLKAIPAQIDYIATSPKSLYAHK 100 Query: 143 -----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP--MDGP--FLEENTNLA-IS 190 I E+++V S I + + L P +DG LE T L ++ Sbjct: 101 YEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSPCEIDGKMNLLETITLLGQLN 160 Query: 191 YCFQNPKWRLSVQTHKFIGI 210 PKW+LS+QTHK IGI Sbjct: 161 QRSNKPKWQLSLQTHKLIGI 180 >gi|253997441|ref|YP_003049505.1| Radical SAM domain-containing protein [Methylotenera mobilis JLW8] gi|253984120|gb|ACT48978.1| Radical SAM domain protein [Methylotenera mobilis JLW8] Length = 212 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 68/145 (46%), Gaps = 28/145 (19%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MKL I EIF +LQGE G VF R +GC + +C +CDT + G+ Sbjct: 1 MKL-KIHEIFYSLQGESSRVGLPTVFVRLTGCPM-----------RCVYCDTAYAFSGGS 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 ++ D+I + E Y +TGGEPL Q D L++AL +G+ +++ET Sbjct: 49 NM------EVEDIITK---VAEYATPYVTVTGGEPLAQKDCHVLLKALCDQGYSVSLETG 99 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIK 144 G ID V P+ L +K Sbjct: 100 G------AIDIAPVDPRVSVILDVK 118 >gi|184159135|ref|YP_001847474.1| organic radical activating protein [Acinetobacter baumannii ACICU] gi|213158261|ref|YP_002320312.1| radical SAM domain protein [Acinetobacter baumannii AB0057] gi|215482627|ref|YP_002324819.1| Radical SAM superfamily protein [Acinetobacter baumannii AB307-0294] gi|239501047|ref|ZP_04660357.1| Radical SAM superfamily protein [Acinetobacter baumannii AB900] gi|294836636|ref|ZP_06781319.1| Radical SAM superfamily protein [Acinetobacter sp. 6013113] gi|294841429|ref|ZP_06786112.1| Radical SAM superfamily protein [Acinetobacter sp. 6014059] gi|294860793|ref|ZP_06798562.1| Radical SAM superfamily protein [Acinetobacter sp. 6013150] gi|301346460|ref|ZP_07227201.1| Radical SAM superfamily protein [Acinetobacter baumannii AB056] gi|301512446|ref|ZP_07237683.1| Radical SAM superfamily protein [Acinetobacter baumannii AB058] gi|301594745|ref|ZP_07239753.1| Radical SAM superfamily protein [Acinetobacter baumannii AB059] gi|56131240|gb|AAV80241.1| putative organic radical activating enzyme [Acinetobacter baumannii] gi|183210729|gb|ACC58127.1| Organic radical activating enzyme [Acinetobacter baumannii ACICU] gi|213057421|gb|ACJ42323.1| radical SAM domain protein [Acinetobacter baumannii AB0057] gi|213988552|gb|ACJ58851.1| Radical SAM superfamily protein [Acinetobacter baumannii AB307-0294] gi|322509049|gb|ADX04503.1| organic radical activating protein [Acinetobacter baumannii 1656-2] gi|323519031|gb|ADX93412.1| organic radical activating protein [Acinetobacter baumannii TCDC-AB0715] Length = 236 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 33/167 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE +G VF R +GC L +C +CDT + +G G R Sbjct: 20 ITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERL 65 Query: 66 NVDQLADLIEEQWITGEK-EGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 +++ + + T EK + Y +TGGEPL Q + + L+Q L GF++++ET+G Sbjct: 66 SLEHIIE-------TAEKYQTPYICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSG--- 115 Query: 124 PPQGIDWICVSPKAGCDLKIK----GGQELKLVFPQVNVSPENYIGF 166 +D V P+ L +K G + L+ +++P + I F Sbjct: 116 ---ALDVSRVDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKF 159 >gi|169632733|ref|YP_001706469.1| putative radical activating enzyme [Acinetobacter baumannii SDF] gi|169151525|emb|CAP00292.1| putative radical activating enzyme [Acinetobacter baumannii] Length = 236 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 33/167 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE +G VF R +GC L +C +CDT + +G G R Sbjct: 20 ITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERL 65 Query: 66 NVDQLADLIEEQWITGEK-EGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 +++ + + T EK + Y +TGGEPL Q + + L+Q L GF++++ET+G Sbjct: 66 SLEHIIE-------TAEKYQTPYICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSG--- 115 Query: 124 PPQGIDWICVSPKAGCDLKIK----GGQELKLVFPQVNVSPENYIGF 166 +D V P+ L +K G + L+ +++P + I F Sbjct: 116 ---ALDVSRVDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKF 159 >gi|293609845|ref|ZP_06692147.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828297|gb|EFF86660.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123071|gb|ADY82594.1| queuosine biosynthesis protein QueE [Acinetobacter calcoaceticus PHEA-2] Length = 236 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 31/166 (18%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE +G VF R +GC L +C +CDT + +G G R+ Sbjct: 20 ITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERF 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 +++ + + + + Y +TGGEPL Q + + L+Q L + GF++++ET+G Sbjct: 66 SLEHIIE------TATQFQTPYICVTGGEPLAQPNCLILLQRLCEAGFDVSLETSG---- 115 Query: 125 PQGIDWICVSPKAGCDLKIK----GGQELKLVFPQVNVSPENYIGF 166 +D V P+ L +K G + L+ +++P + I F Sbjct: 116 --ALDVSRVDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKF 159 >gi|72536298|gb|AAZ73210.1| hypothetical protein [Escherichia coli] Length = 202 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 91/218 (41%), Gaps = 49/218 (22%) Query: 24 AVFCRFSGC----------NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73 A+F R GC + W E +S T + K G + + L + Sbjct: 2 AIFIRLQGCPVGCDWCDTKHTWEKLEDREVSLFSILAKTK----ESDKWGAASSEDLLAV 57 Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE---PPQGIDW 130 I Q T R+ V+TGGEP + +PL L K GF +ET+GT E P W Sbjct: 58 IGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNT--W 111 Query: 131 ICVSPKAGCDLKIKGGQE-LKLVFPQVNVSPENYIG--FDFERF---------------S 172 + VSPK L ++GG E L + N ++ +G D E + Sbjct: 112 VTVSPK----LNMRGGYEVLSQALERAN-EIKHPVGRVRDIEALDELLATLTDDKPRVIA 166 Query: 173 LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 167 LQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 201 >gi|313105862|ref|ZP_07792125.1| putative radical activating enzyme [Pseudomonas aeruginosa 39016] gi|310878627|gb|EFQ37221.1| putative radical activating enzyme [Pseudomonas aeruginosa 39016] Length = 215 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C +CDT + GG Sbjct: 7 ITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAY----AFSGG-- 49 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 +V L ++E + RY +TGGEPL Q + + L++ L G+E+++ET+G ++ Sbjct: 50 DVVSLDAILER---VATYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSGALDV 106 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 + V P+ DLK G E+ Sbjct: 107 SR------VDPRVSKVLDLKTPGSGEV 127 >gi|238754504|ref|ZP_04615859.1| hypothetical protein yruck0001_24400 [Yersinia ruckeri ATCC 29473] gi|238707333|gb|EEP99695.1| hypothetical protein yruck0001_24400 [Yersinia ruckeri ATCC 29473] Length = 170 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 62/142 (43%), Gaps = 21/142 (14%) Query: 85 GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP-QGIDWICVSPKAG----- 138 R+ V+TGGEP + PL L + GF +ET+GT E W+ VSPK Sbjct: 33 ARHVVITGGEPCIYDLSPLTTLLEQEGFSCQIETSGTHEVHCSATTWVTVSPKVNMRGGL 92 Query: 139 --CDLKIKGGQELKLVFPQVNVSPENYIGFDFERF--------SLQPMDGPFLEENTNLA 188 D + E+K P + + ER +LQP+ EE T L Sbjct: 93 TVLDQALIRADEIK--HPVGRIRDIEALDILLERLHDDKARIIALQPISQK--EEATRLC 148 Query: 189 ISYCFQNPKWRLSVQTHKFIGI 210 I C WRLS+QTHK++ I Sbjct: 149 IETCIAR-NWRLSMQTHKYLNI 169 >gi|317473656|ref|ZP_07932945.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA] gi|316898946|gb|EFV20971.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA] Length = 173 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 19/124 (15%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M+++ I E F+++ GEG AGR+++F R GCNL C +CDT + + Sbjct: 1 MEVFKIAESFVSINGEGKKAGRLSMFIRLRGCNL-----------NCSYCDTKWAISKKG 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA--LNKRGFEIAVET 118 + +++ +++E + LTGGEPLL ++ + L+ E+ +ET Sbjct: 50 EAELMTAAEVSQMVKESGVD------LVTLTGGEPLLDENISELIGGILSLPKMELEIET 103 Query: 119 NGTI 122 NG+I Sbjct: 104 NGSI 107 >gi|296390666|ref|ZP_06880141.1| radical activating enzyme [Pseudomonas aeruginosa PAb1] Length = 215 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C +CDT + GG Sbjct: 7 ITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAY----AFSGG-- 49 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 +V L ++E + RY +TGGEPL Q + + L++ L G+E+++ET+G ++ Sbjct: 50 DVVSLDAILER---VATYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSGALDV 106 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 + V P+ DLK G E+ Sbjct: 107 SR------VDPRVSKVLDLKTPGSGEV 127 >gi|320105235|ref|YP_004180826.1| Radical SAM domain-containing protein [Isosphaera pallida ATCC 43644] gi|319752517|gb|ADV64277.1| Radical SAM domain protein [Isosphaera pallida ATCC 43644] Length = 293 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 17/119 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E++ ++QGEG AG VF R + C+L +C +CDT + +GG + Sbjct: 81 LHEVYRSIQGEGTWAGLPCVFVRLTACHL-----------RCVYCDTPHAFVF-REGGDF 128 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 ++ + + E + G +TGGEPLLQ + +PL+ AL GFE+ +ET+G+++ Sbjct: 129 TIEAIVARVAEL----AEPGGLVEVTGGEPLLQPEALPLMTALADAGFEVLLETSGSLD 183 >gi|15596172|ref|NP_249666.1| radical activating enzyme [Pseudomonas aeruginosa PAO1] gi|254245258|ref|ZP_04938580.1| hypothetical protein PA2G_06150 [Pseudomonas aeruginosa 2192] gi|9946883|gb|AAG04364.1|AE004531_1 probable radical activating enzyme [Pseudomonas aeruginosa PAO1] gi|126198636|gb|EAZ62699.1| hypothetical protein PA2G_06150 [Pseudomonas aeruginosa 2192] Length = 264 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C +CDT + GG Sbjct: 56 ITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAY----AFSGG-- 98 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 +V L + E + RY +TGGEPL Q + + L++ L G+E+++ET+G ++ Sbjct: 99 DVVSLDAIFER---VAAYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSGALDV 155 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 + V P+ DLK G E+ Sbjct: 156 SR------VDPRVSKVLDLKTPGSGEV 176 >gi|257077184|ref|ZP_05571545.1| ATP binding cassette transporter, ExsD protein related [Ferroplasma acidarmanus fer1] Length = 229 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 17/122 (13%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 +K+Y I EIFL++QGEG ++G VF R CNL +C +CDT + +G Sbjct: 14 LKMY-INEIFLSIQGEGLYSGEKMVFIRTEYCNL-----------RCSWCDTKYSFYEGK 61 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + ++D++ + + I + LTGGEPLLQ D+ ++ + I +ET+G Sbjct: 62 E---MSIDEIVE--SARNINSGHGASWICLTGGEPLLQKDISVLVDRLSEEYNILLETSG 116 Query: 121 TI 122 ++ Sbjct: 117 SL 118 >gi|288818575|ref|YP_003432923.1| radical SAM domain protein [Hydrogenobacter thermophilus TK-6] gi|288787975|dbj|BAI69722.1| radical SAM domain protein [Hydrogenobacter thermophilus TK-6] gi|308752166|gb|ADO45649.1| Radical SAM domain protein [Hydrogenobacter thermophilus TK-6] Length = 218 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 100/226 (44%), Gaps = 39/226 (17%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 SI EI+ ++QGEG G+ +F RF GCNL +C +CD R Sbjct: 13 SINEIYPSVQGEGLLIGKPCLFVRFQGCNL-----------RCPWCDEP----SALSFKR 57 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI- 122 N D L +L++E +K + VLTGGEP + ++ L+Q L RG+ + +ETNGT+ Sbjct: 58 ANTD-LKELLQELQKYPQK---HVVLTGGEPFAEPNLHLLVQELLCRGYSVQIETNGTLW 113 Query: 123 -----EPPQGIDWICVSPKAGCDLKIK-----GGQELKLVFPQ---VNV-SPENYIGFDF 168 E + C SPK D + +ELK V NV ++ F Sbjct: 114 NENLREVVSQVHITC-SPKGVADWYVHPAVLSSAKELKFVVDHELCYNVIKRREFMPFLE 172 Query: 169 ERF-SLQP--MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 E LQP FL++ L + R+ Q HK IG++ Sbjct: 173 EGLVVLQPEGNKTKFLQKALELQNLLLREGYTVRVVPQMHKLIGLK 218 >gi|42521688|ref|NP_967068.1| radical activating enzyme [Bdellovibrio bacteriovorus HD100] gi|39574218|emb|CAE77722.1| radical activating enzyme [Bdellovibrio bacteriovorus HD100] Length = 212 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 21/120 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF ++QGE + G VF R + CNL +C +CDT + +G Sbjct: 1 MLKINEIFYSIQGETTYVGCPTVFVRLTACNL-----------RCTYCDTKYSYYEG--- 46 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 + L +I E I K C+ TGGEPLLQ +V L++ L +G+ +++ET+G+ Sbjct: 47 ---EMQTLEAIIAE--IDSHKAPNVCI-TGGEPLLQKEVHTLMKTLCDKGYLVSLETSGS 100 >gi|218893054|ref|YP_002441923.1| putative radical activating enzyme [Pseudomonas aeruginosa LESB58] gi|218773282|emb|CAW29094.1| probable radical activating enzyme [Pseudomonas aeruginosa LESB58] Length = 264 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C +CDT + GG Sbjct: 56 ITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAY----AFSGG-- 98 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 +V L + E + RY +TGGEPL Q + + L++ L G+E+++ET+G ++ Sbjct: 99 DVVSLDAIFER---VAAYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSGALDV 155 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 + V P+ DLK G E+ Sbjct: 156 SR------VDPRVSKVLDLKTPGSGEV 176 >gi|254239323|ref|ZP_04932646.1| hypothetical protein PACG_05520 [Pseudomonas aeruginosa C3719] gi|126171254|gb|EAZ56765.1| hypothetical protein PACG_05520 [Pseudomonas aeruginosa C3719] Length = 264 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C +CDT + GG Sbjct: 56 ITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAY----AFSGG-- 98 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 +V L + E + RY +TGGEPL Q + + L++ L G+E+++ET+G ++ Sbjct: 99 DVVSLDAIFER---VAAYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSGALDV 155 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 + V P+ DLK G E+ Sbjct: 156 SR------VDPRVSKVLDLKTPGSGEV 176 >gi|110833622|ref|YP_692481.1| radical activating enzyme [Alcanivorax borkumensis SK2] gi|110646733|emb|CAL16209.1| radical activating enzyme [Alcanivorax borkumensis SK2] Length = 213 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +LQGE GR VF R +GC +C +CDT++ G K Sbjct: 5 LTEIFHSLQGESRTVGRPTVFVRLTGC-----------PQRCVWCDTEYAFSGGEKWS-- 51 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 LA ++EE G +Y +TGGEPL Q +PL++ L G+++++ET G ++ Sbjct: 52 ----LAAILEEVAALG---AQYVTVTGGEPLAQPSCLPLLKTLCDEGYQVSLETGGAMD 103 >gi|49082982|gb|AAT50891.1| PA0975 [synthetic construct] Length = 265 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C +CDT + GG Sbjct: 56 ITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAY----AFSGG-- 98 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 +V L + E + RY +TGGEPL Q + + L++ L G+E+++ET+G ++ Sbjct: 99 DVVSLDAIFER---VAAYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSGALDV 155 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 + V P+ DLK G E+ Sbjct: 156 SR------VDPRVSKVLDLKTPGSGEV 176 >gi|15896859|ref|NP_350208.1| MoaA family Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824] gi|15026725|gb|AAK81548.1|AE007858_9 Fe-S oxidoreductase of MoaA family [Clostridium acetobutylicum ATCC 824] gi|325511033|gb|ADZ22669.1| Fe-S oxidoreductase of MoaA family [Clostridium acetobutylicum EA 2018] Length = 221 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 19/121 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + E F+++ GEG +G+++VF RF+GCNL C +CDT + + K Sbjct: 3 YKVVEKFVSINGEGLKSGQLSVFIRFAGCNL-----------NCNYCDTKWANEKDVKYT 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALN-KRGFEIAVETNGT 121 ++ I+E TG K LTGGEPLLQ V L+ L+ + +ETNG+ Sbjct: 52 LMTEKEILSYIKE---TGVKN---VTLTGGEPLLQDGIVELLNLLSLDSTLRVEIETNGS 105 Query: 122 I 122 + Sbjct: 106 V 106 >gi|150017397|ref|YP_001309651.1| radical SAM domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149903862|gb|ABR34695.1| Radical SAM domain protein [Clostridium beijerinckii NCIMB 8052] Length = 222 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 19/122 (15%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +++I E FL++ GEG +G +A F RF GCNL +C +CDT + + Sbjct: 1 MFNIIEKFLSIDGEGPTSGELATFIRFQGCNL-----------RCSWCDTTYSWDKENTS 49 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFEIAVETNG 120 +++ I+E +T LTGGEPL+Q ++ L+ LN ++ +ETNG Sbjct: 50 EVLTAEEIYKYIKENKVTN------VTLTGGEPLIQKNIHELLGLLNSDDNLKVHIETNG 103 Query: 121 TI 122 + Sbjct: 104 AV 105 >gi|326388331|ref|ZP_08209927.1| radical SAM family protein [Novosphingobium nitrogenifigens DSM 19370] gi|326207063|gb|EGD57884.1| radical SAM family protein [Novosphingobium nitrogenifigens DSM 19370] Length = 248 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 70/149 (46%), Gaps = 34/149 (22%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 E+F +LQGEG GR +VF R S CNL CR+CDT + + + R + Sbjct: 14 ELFASLQGEGASLGRPSVFVRLSRCNL-----------ACRWCDTAYTW-RFSGDNRPHR 61 Query: 68 DQLADLIEEQWITGEKEGRYC-----------VLTGGEPLLQVD-----VPLIQALNKRG 111 D +A IT + EG V+TGGEPLLQ + ++A N+ Sbjct: 62 DDIAFERTANQITAD-EGDIATRILAFGVPRLVVTGGEPLLQAPALARMIAAVRAGNE-A 119 Query: 112 FEIAVETNGTIEPPQGIDWIC----VSPK 136 I +ETNG++ P +D + VSPK Sbjct: 120 MHIEIETNGSVAPTPALDALIDQYNVSPK 148 >gi|21243865|ref|NP_643447.1| radical activating enzyme [Xanthomonas axonopodis pv. citri str. 306] gi|21109466|gb|AAM37983.1| radical activating enzyme [Xanthomonas axonopodis pv. citri str. 306] Length = 227 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIFL+LQGE AG VF R +GC L +C +CDT + G G + Sbjct: 20 ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCHYCDTAY-AFHG--GQWH 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 ++D + + + R+ +TGGEPL Q + L+Q L GF++++ET+G ++ Sbjct: 66 DIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGFDVSLETSGALD 118 >gi|291612993|ref|YP_003523150.1| radical SAM domain protein [Sideroxydans lithotrophicus ES-1] gi|291583105|gb|ADE10763.1| Radical SAM domain protein [Sideroxydans lithotrophicus ES-1] Length = 218 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 22/125 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G VF R +GC L +C +CDT + G Sbjct: 11 ISEIFYSLQGETSRVGLPTVFVRLTGCPL-----------RCSYCDTAYAFTGGQSM--- 56 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 QL+ +++E RY +TGGEPL Q + + L++AL G+E+++ET G ++ Sbjct: 57 ---QLSAIMDE---VASYAPRYVTVTGGEPLAQKNCLFLLRALCDAGYEVSLETGGALD- 109 Query: 125 PQGID 129 G+D Sbjct: 110 VSGVD 114 >gi|30248245|ref|NP_840315.1| radical activating enzyme [Nitrosomonas europaea ATCC 19718] gi|30180130|emb|CAD84132.1| Radical activating enzymes [Nitrosomonas europaea ATCC 19718] Length = 211 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 21/122 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGE G VF R +GC L +C +CDT + G Sbjct: 1 MLRITEIFYSLQGETSRMGLPTVFVRLTGCPL-----------RCGYCDTGY----AFSG 45 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 G+ +++++ E RY +TGGEPL Q D + L+ AL RG+ +++ET+G Sbjct: 46 GKSM--SISEIMGE---VASFSPRYVTVTGGEPLAQADSLVLLAALCDRGYSVSLETSGA 100 Query: 122 IE 123 ++ Sbjct: 101 LD 102 >gi|295695132|ref|YP_003588370.1| Radical SAM domain protein [Bacillus tusciae DSM 2912] gi|295410734|gb|ADG05226.1| Radical SAM domain protein [Bacillus tusciae DSM 2912] Length = 218 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 27/142 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E+F ++QGE G VF RF+GCNL +C +CDT + +GT R Sbjct: 3 LNELFFSIQGESSSMGLPTVFVRFTGCNL-----------RCSYCDTTYAYFEGT---RT 48 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ---VDVPLIQALNKRGFEIAVETNGTI 122 +++ I+E + R LTGGEPL+Q L+ L +E+++ET+G+I Sbjct: 49 TPEEIFRQIQEYGV------RRVCLTGGEPLIQPREELQQLLDLLGGNNYEVSIETDGSI 102 Query: 123 EPPQGIDWICVSPKAGCDLKIK 144 + I+ + + PK L IK Sbjct: 103 D----IERVKLRPKQRFILDIK 120 >gi|329121407|ref|ZP_08250032.1| radical SAM domain protein [Dialister micraerophilus DSM 19965] gi|327469697|gb|EGF15164.1| radical SAM domain protein [Dialister micraerophilus DSM 19965] Length = 226 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 19/120 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-VGIQGTKG 62 + I EIF +++GEG G +A+F R + CNL +C +CDT + + ++ TK Sbjct: 11 FHIVEIFDSIEGEGKRTGYMAIFVRLASCNL-----------RCTYCDTSYALTLKDTKE 59 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + W + TGGEP+L + + L K G+EI +ET+G+I Sbjct: 60 ILSEKELIEKIHSYPW-------KKITFTGGEPMLHPLQNICETLGKEGYEINIETSGSI 112 >gi|313891412|ref|ZP_07825028.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Dialister microaerophilus UPII 345-E] gi|313120187|gb|EFR43363.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Dialister microaerophilus UPII 345-E] Length = 226 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 19/120 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-VGIQGTKG 62 + I EIF +++GEG G +A+F R + CNL +C +CDT + + ++ TK Sbjct: 11 FHIVEIFDSIEGEGKRTGYMAIFVRLASCNL-----------RCTYCDTSYALTLKDTKE 59 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + W + TGGEP+L + + L K G+EI +ET+G+I Sbjct: 60 ILSEKELIEKIHSYPW-------KKITFTGGEPMLHPLQNICETLGKEGYEINIETSGSI 112 >gi|148652703|ref|YP_001279796.1| radical SAM domain-containing protein [Psychrobacter sp. PRwf-1] gi|148571787|gb|ABQ93846.1| Radical SAM domain protein [Psychrobacter sp. PRwf-1] Length = 245 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 23/119 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +LQGE AG VF R +GC L +C +CDT + T G R Sbjct: 23 MTEIFYSLQGEALTAGLPTVFVRLTGCPL-----------RCVYCDTTY---SFTGGERL 68 Query: 66 NVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +++ +AD+ + + LTGGEPL Q + +PL+Q L G+EI++ET G + Sbjct: 69 SLEAIMADI-------AQYPCKRICLTGGEPLAQPNAIPLMQRLLDEGYEISLETAGAL 120 >gi|71909659|ref|YP_287246.1| radical SAM family protein [Dechloromonas aromatica RCB] gi|71849280|gb|AAZ48776.1| Radical SAM [Dechloromonas aromatica RCB] Length = 212 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G VF R +GC L +C +CDT + G Sbjct: 5 ITEIFYSLQGEASRVGLPTVFVRLTGCPL-----------RCSWCDTTYSFTGGEAATVE 53 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 +V LA++ + R +TGGEPL Q D +PL+ AL G+++++ET+G ++ Sbjct: 54 SV--LAEV-------AKYPARQVCVTGGEPLSQKDCLPLLAALCNAGYDVSLETSGALD 103 >gi|325923406|ref|ZP_08185071.1| organic radical activating enzyme [Xanthomonas gardneri ATCC 19865] gi|325546121|gb|EGD17310.1| organic radical activating enzyme [Xanthomonas gardneri ATCC 19865] Length = 227 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIFL+LQGE AG VF R +GC L +C +CDT + G G + Sbjct: 20 ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCHYCDTAY-AFHG--GEWH 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 ++D + + + R+ +TGGEPL Q + L+Q L GF++++ET+G ++ Sbjct: 66 DIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGFDVSLETSGALD 118 >gi|77163686|ref|YP_342211.1| radical SAM domain-containing protein [Nitrosococcus oceani ATCC 19707] gi|254436167|ref|ZP_05049674.1| radical SAM domain protein, putative [Nitrosococcus oceani AFC27] gi|76882000|gb|ABA56681.1| Radical SAM domain protein [Nitrosococcus oceani ATCC 19707] gi|207089278|gb|EDZ66550.1| radical SAM domain protein, putative [Nitrosococcus oceani AFC27] Length = 213 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 23/125 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK I EIF +LQGE G F R +GC L +C +CDT++ Sbjct: 1 MKRLRITEIFYSLQGEARSVGWPTAFVRLTGCPL-----------RCHYCDTEY----AF 45 Query: 61 KGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118 +GGR+ +D + D + E + R+ +TGGEPL Q + L+ L G+E+++ET Sbjct: 46 QGGRWMALDGILDAVAEFGV------RHVTVTGGEPLAQSACLGLLTRLCDAGYEVSLET 99 Query: 119 NGTIE 123 +G ++ Sbjct: 100 SGALD 104 >gi|302035630|ref|YP_003795952.1| putative radical-activating enzyme, radical SAM superfamily [Candidatus Nitrospira defluvii] gi|300603694|emb|CBK40025.1| putative Radical-activating enzyme, radical SAM superfamily [Candidatus Nitrospira defluvii] Length = 212 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 61/125 (48%), Gaps = 27/125 (21%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + EIF ++QGE +AGR VF R +GC L +C +CDT + G Sbjct: 1 MVKVTEIFHSIQGESTYAGRPCVFVRLTGCPL-----------RCTWCDTAY----AFYG 45 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVL---TGGEPLLQ-VDVPLIQALNKRGFEIAVET 118 GR DL + I + C L TGGEPL Q +PL+ L GFE+ VET Sbjct: 46 GR-------DLTIDD-IVNQVRAFSCDLVEVTGGEPLSQPASLPLLTRLCDEGFEVLVET 97 Query: 119 NGTIE 123 +G IE Sbjct: 98 SGAIE 102 >gi|226328670|ref|ZP_03804188.1| hypothetical protein PROPEN_02565 [Proteus penneri ATCC 35198] gi|225203403|gb|EEG85757.1| hypothetical protein PROPEN_02565 [Proteus penneri ATCC 35198] Length = 152 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 23/154 (14%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53 Y I E+F TLQGEG G A+F R GC + W ++ ++ D Sbjct: 3 YPINEVFQTLQGEGVFTGVPALFVRLQGCPVGCSWCDTKHTWEKEDEKKV----LLGDIP 58 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 + G +V Q+ L ++Q + ++ V+TGGEP L PL + L + GF Sbjct: 59 IKTQESDTWGEASVAQILSLFQQQGYS----AKHVVITGGEPCLYDLRPLTEGLEQAGFA 114 Query: 114 IAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGG 146 +ET+GT + W+ +SPK G +KGG Sbjct: 115 CQIETSGTHDILCSEKTWVTLSPKVG----MKGG 144 >gi|289548016|ref|YP_003473004.1| radical SAM protein [Thermocrinis albus DSM 14484] gi|289181633|gb|ADC88877.1| Radical SAM domain protein [Thermocrinis albus DSM 14484] Length = 219 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 99/225 (44%), Gaps = 38/225 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EI+ +LQGEG G +VF R GCNL +C +CD + G Sbjct: 14 VSEIYPSLQGEGLLVGTPSVFVRLQGCNL-----------RCPWCDQP----ESLHPGGG 58 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124 + + D+I + E R+ V+TGGEP Q + L++ L K GF + +ETNGT+ Sbjct: 59 ALMSVEDVIGK---VREYPHRHVVITGGEPFTQSFLTLLVEELLKEGFSVQIETNGTLW- 114 Query: 125 PQGID------WICVSPKAGCDLKIKG-----GQELKLVFPQ-----VNVSPENYIGFDF 168 +G+D I +SPK + +ELK V + + P + Sbjct: 115 QKGMDTLASHIHITLSPKGVASWFVHPKVLLYARELKWVVDHLLTLDIILMPSFRRFLEE 174 Query: 169 ERFSLQPMDGP--FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 ER LQP FL++ +L + R+ Q HK +G++ Sbjct: 175 ERVVLQPEGNKEIFLQKALSLQEELLSLGYRVRVLPQLHKLLGLK 219 >gi|149919125|ref|ZP_01907609.1| hypothetical protein PPSIR1_35157 [Plesiocystis pacifica SIR-1] gi|149820055|gb|EDM79476.1| hypothetical protein PPSIR1_35157 [Plesiocystis pacifica SIR-1] Length = 261 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 21/134 (15%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 ++E F+++QGEG G + F R SGCNL +C +CDT +G R Sbjct: 20 VQERFVSIQGEGSLVGVRSSFVRVSGCNL-----------RCVWCDTPRTS-WAPEGERA 67 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEP 124 ++D L D W + R+ VLTGGEPLL L L G + +ET G++ Sbjct: 68 SLDALVD-----WCGAPGQPRHVVLTGGEPLLFPACAELSARLRAAGHHLTIETAGSLW- 121 Query: 125 PQGI--DWICVSPK 136 +G+ D + +SPK Sbjct: 122 CEGVEADLMSISPK 135 >gi|88705614|ref|ZP_01103324.1| radical activating enzyme [Congregibacter litoralis KT71] gi|88700127|gb|EAQ97236.1| radical activating enzyme [Congregibacter litoralis KT71] Length = 226 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 21/118 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G VF R +GC L +C +CDT++ G G Sbjct: 18 ITEIFYSLQGEARTVGLPTVFVRLTGCPL-----------RCLYCDTEY-AFHG--GEIM 63 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +++ +AD + + Y +TGGEPL Q + +PL+ L +G+E+++ET+G + Sbjct: 64 SLEHIADQV------AAHKPAYVTVTGGEPLAQPNCLPLLSRLCDQGYEVSLETSGAM 115 >gi|225874258|ref|YP_002755717.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196] gi|225791949|gb|ACO32039.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196] Length = 226 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 21/115 (18%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 EI+ ++QGE AGR +F R +GCNL +C +CD+++ T G ++ Sbjct: 5 EIYKSVQGESSFAGRPCIFVRLAGCNL-----------RCSWCDSEYT---FTGGEAFSD 50 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 D++ IE R TGGEPLLQ +P ++ L G+E+ +ET+G Sbjct: 51 DEILARIE-----ALAPVRLVEFTGGEPLLQAKQLIPFMERLLAAGYELMIETSG 100 >gi|29653453|ref|NP_819145.1| radical SAM domain-containing protein [Coxiella burnetii RSA 493] gi|153207177|ref|ZP_01945956.1| radical SAM domain protein [Coxiella burnetii 'MSU Goat Q177'] gi|154707102|ref|YP_001425323.1| queuosine biosynthesis protein [Coxiella burnetii Dugway 5J108-111] gi|161830218|ref|YP_001596061.1| radical SAM domain-containing protein [Coxiella burnetii RSA 331] gi|165918380|ref|ZP_02218466.1| radical SAM domain protein [Coxiella burnetii RSA 334] gi|212213378|ref|YP_002304314.1| queuosine biosynthesis protein [Coxiella burnetii CbuG_Q212] gi|212219428|ref|YP_002306215.1| queuosine biosynthesis protein [Coxiella burnetii CbuK_Q154] gi|29540715|gb|AAO89659.1| queuosine biosynthesis protein [Coxiella burnetii RSA 493] gi|120576838|gb|EAX33462.1| radical SAM domain protein [Coxiella burnetii 'MSU Goat Q177'] gi|154356388|gb|ABS77850.1| queuosine biosynthesis protein [Coxiella burnetii Dugway 5J108-111] gi|161762085|gb|ABX77727.1| radical SAM domain protein [Coxiella burnetii RSA 331] gi|165917886|gb|EDR36490.1| radical SAM domain protein [Coxiella burnetii RSA 334] gi|212011788|gb|ACJ19169.1| queuosine biosynthesis protein [Coxiella burnetii CbuG_Q212] gi|212013690|gb|ACJ21070.1| queuosine biosynthesis protein [Coxiella burnetii CbuK_Q154] Length = 213 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 29/152 (19%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M I EIF +LQGE G VF R +GC L +C +CDT + Sbjct: 1 MDKLRITEIFYSLQGETKTVGLPTVFVRLTGCPL-----------RCHYCDTPY----AF 45 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETN 119 GG+ + L D++ + + RY +TGGEPL Q +PL+Q L + +++ET+ Sbjct: 46 YGGQSLL--LEDVVHQ---VASYQTRYVTVTGGEPLAQPACLPLLQRLCDLNYRVSLETS 100 Query: 120 GTIEPPQGIDWICVSPKA--GCDLKIKGGQEL 149 G +D V P+ D+K G +E+ Sbjct: 101 G------ALDISNVDPRVIKIVDVKTPGSKEM 126 >gi|254523566|ref|ZP_05135621.1| radical activating enzyme [Stenotrophomonas sp. SKA14] gi|219721157|gb|EED39682.1| radical activating enzyme [Stenotrophomonas sp. SKA14] Length = 233 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CDT + GT + Sbjct: 26 ITEIFTSLQGEADTAGWPTVFVRLTGCPL-----------RCQYCDTAYAFHGGT---WW 71 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 ++D D++ E G R+ +TGGEPL Q + L+Q L G ++++ET+G Sbjct: 72 DID---DIVAEVLAQGV---RHVCVTGGEPLAQKRCLVLLQKLCDAGMDVSLETSG---- 121 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 +D V P+ D+K G E+ Sbjct: 122 --ALDVSAVDPRVSRVVDIKTPGSAEV 146 >gi|299769138|ref|YP_003731164.1| Radical SAM superfamily protein [Acinetobacter sp. DR1] gi|298699226|gb|ADI89791.1| Radical SAM superfamily protein [Acinetobacter sp. DR1] Length = 236 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE +G VF R +GC L +C +CDT + +G G R+ Sbjct: 20 ITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERF 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 +++ + + + + Y +TGGEPL Q + + L+Q L + GF++++ET+G ++ Sbjct: 66 SLEHIIE------TATQYQTPYICVTGGEPLAQPNCLILLQRLCEAGFDVSLETSGALD 118 >gi|325914192|ref|ZP_08176545.1| organic radical activating enzyme [Xanthomonas vesicatoria ATCC 35937] gi|325539695|gb|EGD11338.1| organic radical activating enzyme [Xanthomonas vesicatoria ATCC 35937] Length = 227 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIFL+LQGE AG VF R +GC L +C +CDT + G G + Sbjct: 20 ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCNYCDTAY-AFHG--GQWH 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 ++D + + + R+ +TGGEPL Q + L+Q L GF++++ET+G ++ Sbjct: 66 DIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGFDVSLETSGALD 118 >gi|330506424|ref|YP_004382852.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6] gi|328927232|gb|AEB67034.1| radical SAM domain protein [Methanosaeta concilii GP-6] Length = 185 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/144 (37%), Positives = 66/144 (45%), Gaps = 34/144 (23%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 GR A+F R SGCNL C CDTD +V +L IE Q Sbjct: 2 GRPALFIRLSGCNL-----------NCEGCDTDL-----KPSLDLSVLELLKRIEGQ--- 42 Query: 81 GEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGI-DWIC---VS 134 G+ ++TGGEP LQ++ V LI L RG EI +E+NGT P I + IC VS Sbjct: 43 ----GKRVIITGGEPTLQMNELVDLICRLYSRGMEIHIESNGTNTIPLDILEKICCAVVS 98 Query: 135 PKAGCDLKI-----KGGQELKLVF 153 PK G D + K LK V Sbjct: 99 PKRGSDFNLGFWANKSNVHLKFVL 122 >gi|194366888|ref|YP_002029498.1| Radical SAM domain-containing protein [Stenotrophomonas maltophilia R551-3] gi|194349692|gb|ACF52815.1| Radical SAM domain protein [Stenotrophomonas maltophilia R551-3] Length = 233 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 29/146 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CDT + GT + Sbjct: 26 ITEIFTSLQGEADTAGWPTVFVRLTGCPL-----------RCQYCDTAYAFHGGT---WW 71 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 ++D D++ E G R+ +TGGEPL Q + L+Q L G ++++ET+G Sbjct: 72 DID---DIVAEVLAQGV---RHVCVTGGEPLAQKRCLVLLQKLCDAGMDVSLETSG---- 121 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQE 148 +D V P+ D+K G E Sbjct: 122 --ALDVSAVDPRVSRVVDIKTPGSAE 145 >gi|188577425|ref|YP_001914354.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521877|gb|ACD59822.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae PXO99A] Length = 213 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 21/124 (16%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M I EIFL+LQGE AG VF R +GC L +C +CDT + Sbjct: 1 MPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCVYCDTAY----AF 45 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119 GG ++ + D++ E G R+ +TGGEPL Q + L+Q L G+++++ET+ Sbjct: 46 HGGEWH--DIDDVLAEVATHGV---RHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETS 100 Query: 120 GTIE 123 G ++ Sbjct: 101 GALD 104 >gi|114330319|ref|YP_746541.1| radical SAM domain-containing protein [Nitrosomonas eutropha C91] gi|114307333|gb|ABI58576.1| Radical SAM domain protein [Nitrosomonas eutropha C91] Length = 211 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 21/122 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + EIF +LQGE G VF R +GC L +C +CDT + G Sbjct: 1 MLRVTEIFYSLQGETSRMGLPTVFIRLTGCPL-----------RCGYCDTSY----AFSG 45 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 G + D+ E Y +TGGEPL Q D + L+ AL RG+ +++ET+G Sbjct: 46 G-----ESMDISEIMRKVASFSPHYVTVTGGEPLAQADSLTLLTALCDRGYSVSLETSGA 100 Query: 122 IE 123 ++ Sbjct: 101 LD 102 >gi|219850957|ref|YP_002465389.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c] gi|219545216|gb|ACL15666.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c] Length = 202 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 94/225 (41%), Gaps = 44/225 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIFL+LQGEG + G+ +F R SGCNL C +CDT + T G Sbjct: 3 ISEIFLSLQGEGVYQGKACIFIRLSGCNL-----------SCSWCDTRYA---CTLGEEM 48 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGE--PLLQVDVPLIQALNKRGFEIAVETNGTIE 123 +Q+ + + E E C+ TGGE +PL++AL RG+ + +ETNGTI+ Sbjct: 49 TTEQVLERVSE-----ENCSLICI-TGGEPLLQQDQLLPLLKALEDRGYIVGIETNGTID 102 Query: 124 -------PPQGIDWICVSPKAGCDLK----IKGGQELKLVFPQVNVSPENYIGFDFERFS 172 +D C S DL I+ +K V V + + Sbjct: 103 FIASGEYASICMDVKCPSSGETSDLSLLEHIRVTDSVKFV-----VKDQQDCAYAESVIR 157 Query: 173 LQPMDGP------FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 P+ G F E T LA ++ +Q HK IG++ Sbjct: 158 DHPIKGTIFFSPVFGSEYTALASFVLTRHLPVTFQMQLHKIIGVK 202 >gi|164686487|ref|ZP_02210515.1| hypothetical protein CLOBAR_00052 [Clostridium bartlettii DSM 16795] gi|164604498|gb|EDQ97963.1| hypothetical protein CLOBAR_00052 [Clostridium bartlettii DSM 16795] Length = 220 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 19/123 (15%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +++I E F+++ GEG AG +A F RF GCNL +C +CDT + + Sbjct: 1 MFNIIEKFVSIDGEGPTAGELATFIRFQGCNL-----------RCSWCDTTYSFDKSEIT 49 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL--NKRGFEIAVETNG 120 + ++ D I+ ++ LTGGEPL Q ++ + +L + + + +ETNG Sbjct: 50 EVLSAQEIYDYIKSTGVSN------VTLTGGEPLFQENINEVLSLLNDDKNLVVHIETNG 103 Query: 121 TIE 123 I+ Sbjct: 104 AID 106 >gi|292490344|ref|YP_003525783.1| radical SAM protein [Nitrosococcus halophilus Nc4] gi|291578939|gb|ADE13396.1| Radical SAM domain protein [Nitrosococcus halophilus Nc4] Length = 213 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 70/151 (46%), Gaps = 29/151 (19%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK I EIF +LQGE G VF R +GC L +C +CDT++ QG Sbjct: 1 MKRLRITEIFHSLQGESRSVGWPTVFVRLTGCPL-----------RCHYCDTEY-AFQG- 47 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETN 119 G +D++ + E R+ +TGGEPL Q + L+ L G+E+++ET+ Sbjct: 48 -GTWMELDEILATV------AEFGARHVTVTGGEPLAQPACLELLTQLCDVGYEVSLETS 100 Query: 120 GTIEPPQGIDWICVSPKA--GCDLKIKGGQE 148 G +D V P+ DLK G E Sbjct: 101 G------ALDISAVDPRVVKVMDLKTPGSGE 125 >gi|262192386|ref|ZP_06050539.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae CT 5369-93] gi|262031739|gb|EEY50324.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae CT 5369-93] Length = 216 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 92/226 (40%), Gaps = 35/226 (15%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 +F T+QGEG G AVF R GC + W +Q + + ++ + + Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLDSDQTSFSQILLKTSDAPTW 60 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 ++++ G + ++ V+TGGEP + L QA G +ET+GT E Sbjct: 61 CQASAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQIETSGTYEVC 119 Query: 126 QGID-WICVSPKAGC-------DLKIKGGQELKL-------------VFPQVNVSPENYI 164 + W+ VSPK D ++ E+K + + VS + I Sbjct: 120 ATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLARAQVSAQTAI 179 Query: 165 GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ T L I C WRLS+QTHK++ I Sbjct: 180 -------ALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215 >gi|255020132|ref|ZP_05292202.1| Queuosine Biosynthesis QueE Radical SAM [Acidithiobacillus caldus ATCC 51756] gi|254970425|gb|EET27917.1| Queuosine Biosynthesis QueE Radical SAM [Acidithiobacillus caldus ATCC 51756] Length = 213 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 72/154 (46%), Gaps = 31/154 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + EIF +LQGE +G A F R +GC L +C +CDT + Sbjct: 1 MSRLRVSEIFHSLQGETTASGVPATFVRLTGCPL-----------RCSYCDTAY----AF 45 Query: 61 KGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118 GG + + DQ+ + E++ R V+TGGEPL Q V L+ AL G E+ +ET Sbjct: 46 HGGEWLDADQILARV------AERDNRLVVITGGEPLAQPAVHALMTALCDGGREVYLET 99 Query: 119 NGTIEPPQGIDWICVSPKAG--CDLKIKGGQELK 150 +G + + V P+ DLK G EL+ Sbjct: 100 SGALSVAE------VDPRVVKILDLKSPGSGELE 127 >gi|285019180|ref|YP_003376891.1| organic radical activating enzyme protein [Xanthomonas albilineans GPE PC73] gi|283474398|emb|CBA16899.1| putative organic radical activating enzyme protein [Xanthomonas albilineans] Length = 225 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 27/140 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIFL+LQGE AG VF R +GC L +C +CDT + G G + Sbjct: 18 LTEIFLSLQGEADSAGWPTVFVRLTGCPL-----------RCSYCDTAY-AFHG--GQWW 63 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 ++D + + + R+ +TGGEPL Q + L+Q+L G+++++ET+G ++ Sbjct: 64 DIDAILAEVARHGV------RHVCVTGGEPLAQKRCLQLLQSLCDTGYDVSLETSGALDI 117 Query: 125 PQGIDWICVSPKAGCDLKIK 144 + V P+ L IK Sbjct: 118 AE------VDPRVSRVLDIK 131 >gi|107100431|ref|ZP_01364349.1| hypothetical protein PaerPA_01001456 [Pseudomonas aeruginosa PACS2] Length = 215 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C +CDT + GG Sbjct: 7 ITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAY----AFSGG-- 49 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 +V L + E + RY +TGGEPL Q + + L++ L G+E+++ET+G ++ Sbjct: 50 DVVSLDAIFER---VAAYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSGALDV 106 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 + + P+ DLK G E+ Sbjct: 107 SR------IDPRVSKVLDLKTPGSGEV 127 >gi|169795077|ref|YP_001712870.1| putative radical activating enzyme [Acinetobacter baumannii AYE] gi|169148004|emb|CAM85867.1| putative radical activating enzyme [Acinetobacter baumannii AYE] Length = 236 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 33/167 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE +G VF R +GC L +C +CDT + +G G R Sbjct: 20 ITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERL 65 Query: 66 NVDQLADLIEEQWITGEK-EGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 +++ + + T EK + Y +TGGEPL Q + + L+Q L F++++ET+G Sbjct: 66 SLEHIIE-------TAEKYQTPYICVTGGEPLAQPNCLILLQRLCDASFDVSLETSG--- 115 Query: 124 PPQGIDWICVSPKAGCDLKIK----GGQELKLVFPQVNVSPENYIGF 166 +D V P+ L +K G + L+ +++P + I F Sbjct: 116 ---ALDVSRVDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKF 159 >gi|91776688|ref|YP_546444.1| radical SAM family protein [Methylobacillus flagellatus KT] gi|91710675|gb|ABE50603.1| Radical SAM [Methylobacillus flagellatus KT] Length = 212 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 62/129 (48%), Gaps = 23/129 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGE G VF R +GC + +C +CDT++ KG Sbjct: 1 MLRIHEIFHSLQGESSRVGLPTVFVRLTGCPM-----------RCVYCDTEY----AFKG 45 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 G + D I EQ RY +TGGEPL Q + L++ L G+E+++ET G Sbjct: 46 GS---NMTLDQIMEQ--VASYGARYVCVTGGEPLAQKKHCLELLRQLCDAGYEVSLETGG 100 Query: 121 TIEPPQGID 129 I G+D Sbjct: 101 AI-ATDGVD 108 >gi|15607013|ref|NP_214395.1| hypothetical protein aq_2035 [Aquifex aeolicus VF5] gi|2984272|gb|AAC07798.1| hypothetical protein aq_2035 [Aquifex aeolicus VF5] Length = 219 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 86/182 (47%), Gaps = 35/182 (19%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTK 61 L ++ E++ ++QGEG G +VF R GCNL +C +CD + + G K Sbjct: 12 LIALNEVYESIQGEGLLVGLPSVFIRLQGCNL-----------RCPWCDQPEALSFSGRK 60 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +L+ LI E + ++ V+TGGEP ++P +++ L G+ + +ETNG Sbjct: 61 V------KLSSLINE---LKKFTAKHIVITGGEPFAHRELPFIVEFLLSEGYSVQIETNG 111 Query: 121 TI------EPPQGIDWICVSPKAGCDLKI-----KGGQELKLVFPQVNVSPENYIGFDFE 169 T+ + +GI C SPK + K +ELK V + S E +FE Sbjct: 112 TLWVEEMEKFAEGIHITC-SPKGVAKYYVHPKILKYAKELKFVVDK-EFSKEVLKKEEFE 169 Query: 170 RF 171 RF Sbjct: 170 RF 171 >gi|258646637|ref|ZP_05734106.1| putative sigma-54 dependent DNA-binding response regulator [Dialister invisus DSM 15470] gi|260404058|gb|EEW97605.1| putative sigma-54 dependent DNA-binding response regulator [Dialister invisus DSM 15470] Length = 219 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 19/120 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + EIF ++ GEG G +AVF RF+GCN+ +C +CDT + + Sbjct: 5 FPVAEIFDSIDGEGKRTGYMAVFVRFAGCNI-----------RCTYCDTAYALKESDAEE 53 Query: 64 RYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++L I W + TGGEPLL + L + G+EI +ETNG + Sbjct: 54 FLTKEELLGRIRSYPW-------KRITFTGGEPLLHPLQEICDILGEEGYEINIETNGAV 106 >gi|190575559|ref|YP_001973404.1| putative radical SAM-superfamily protein [Stenotrophomonas maltophilia K279a] gi|190013481|emb|CAQ47116.1| putative radical SAM-superfamily protein [Stenotrophomonas maltophilia K279a] Length = 233 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 29/146 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CDT + GT + Sbjct: 26 ITEIFTSLQGEADTAGWPTVFVRLTGCPL-----------RCQYCDTAYAFHGGT---WW 71 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 ++D D++ E G R+ +TGGEPL Q + L+Q L G ++++ET+G Sbjct: 72 DID---DIVAEVLAQGV---RHVCVTGGEPLAQKRCLVLLQKLCDAGMDVSLETSG---- 121 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQE 148 +D V P+ D+K G E Sbjct: 122 --ALDVSAVDPRVSRVVDIKTPGSAE 145 >gi|322805868|emb|CBZ03433.1| queuosine Biosynthesis QueE Radical SAM [Clostridium botulinum H04402 065] Length = 221 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 20/142 (14%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + E +++ GEG G++A+F RF+GCNL C +CDT + K Sbjct: 3 FKVVERVVSINGEGRRCGQLAIFIRFAGCNL-----------NCSYCDTLWA---NEKDV 48 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFEIAVETNGT 121 Y V D+ E KE + LTGGEPLLQ + L++ L+K + + +ETNG+ Sbjct: 49 PYEVLSSKDIYE---YIKSKEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105 Query: 122 IEPPQGIDWICVSPKAGCDLKI 143 I + ++ I SP D K+ Sbjct: 106 ILLDEFLN-IENSPSFTMDYKL 126 >gi|260551478|ref|ZP_05825662.1| radical SAM superfamily protein [Acinetobacter sp. RUH2624] gi|260405472|gb|EEW98965.1| radical SAM superfamily protein [Acinetobacter sp. RUH2624] Length = 236 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 23/120 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE +G VF R +GC L +C +CDT + +G G R Sbjct: 20 ITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERL 65 Query: 66 NVDQLADLIEEQWITGEK-EGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 +++ + + T EK + Y +TGGEPL Q + + L+Q L GF++++ET+G ++ Sbjct: 66 SLEHIIE-------TAEKYQTPYICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSGALD 118 >gi|71275793|ref|ZP_00652077.1| Radical SAM [Xylella fastidiosa Dixon] gi|71900392|ref|ZP_00682525.1| Radical SAM [Xylella fastidiosa Ann-1] gi|170730227|ref|YP_001775660.1| radical activating enzyme [Xylella fastidiosa M12] gi|71163371|gb|EAO13089.1| Radical SAM [Xylella fastidiosa Dixon] gi|71729824|gb|EAO31922.1| Radical SAM [Xylella fastidiosa Ann-1] gi|167965020|gb|ACA12030.1| radical activating enzyme [Xylella fastidiosa M12] Length = 217 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 23/120 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIFL+LQGE G VF R +GC L +C++CDT + GG + Sbjct: 10 ISEIFLSLQGEANSVGWPTVFVRLTGCPL-----------RCQYCDTSY----AFHGGEW 54 Query: 66 -NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 ++D + + + + R+ +TGGEPL Q + L++ L GFE+++ET+G ++ Sbjct: 55 RSIDTIVNEVRSYGV------RHVCVTGGEPLAQKRCLLLLEKLCDAGFEVSLETSGALD 108 >gi|313202056|ref|YP_004040714.1| radical sam domain-containing protein [Methylovorus sp. MP688] gi|312441372|gb|ADQ85478.1| Radical SAM domain protein [Methylovorus sp. MP688] Length = 212 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 71/153 (46%), Gaps = 30/153 (19%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MKL I EIF +LQGE G VF R +GC + +C +CDT + G Sbjct: 1 MKL-RIHEIFHSLQGESSRVGLPTVFVRLTGCPM-----------RCVYCDTAY-AFHG- 46 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 GG +D D++++ E Y +TGGEPL Q D L+ L G+ +++ET Sbjct: 47 -GGSMEID---DIMQK---VAEYGAHYVTVTGGEPLAQRDCHVLLTRLCDAGYSVSLETG 99 Query: 120 GTIEPPQGIDWICVSPKAGC--DLKIKGGQELK 150 G +D V P+ D+K G EL+ Sbjct: 100 G------AMDIANVDPRVSVILDIKTPGSGELE 126 >gi|166712980|ref|ZP_02244187.1| radical activating enzyme [Xanthomonas oryzae pv. oryzicola BLS256] Length = 227 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIFL+LQGE AG VF R +GC L +C +CDT + GG + Sbjct: 20 ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCVYCDTAY----AFHGGEW 64 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 + + D++ E G R+ +TGGEPL Q + L+Q L G+++++ET+G ++ Sbjct: 65 H--DIDDVLAEVATHGV---RHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETSGALD 118 >gi|28198799|ref|NP_779113.1| radical activating enzyme [Xylella fastidiosa Temecula1] gi|182681498|ref|YP_001829658.1| radical SAM domain-containing protein [Xylella fastidiosa M23] gi|28056890|gb|AAO28762.1| radical activating enzyme [Xylella fastidiosa Temecula1] gi|182631608|gb|ACB92384.1| Radical SAM domain protein [Xylella fastidiosa M23] gi|307579952|gb|ADN63921.1| radical SAM domain-containing protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 217 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 23/120 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIFL+LQGE G VF R +GC L +C++CDT + GG + Sbjct: 10 ISEIFLSLQGEANSVGWPTVFVRLTGCPL-----------RCQYCDTSY----AFHGGEW 54 Query: 66 -NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 ++D + + + + R+ +TGGEPL Q + L++ L GFE+++ET+G ++ Sbjct: 55 RSIDTIVNEVRSYGV------RHVCVTGGEPLAQKRCLLLLEKLCDAGFEVSLETSGALD 108 >gi|262169329|ref|ZP_06037021.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae RC27] gi|262022142|gb|EEY40851.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae RC27] gi|327484035|gb|AEA78442.1| Queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae LMA3894-4] Length = 216 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 93/229 (40%), Gaps = 41/229 (17%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ-GTKG 62 +F T+QGEG G AVF R GC + W +Q + L + T F I T Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLDSD----QTSFSQILLKTND 56 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 A + +++ + ++ V+TGGEP + L QA G +ET+GT Sbjct: 57 APTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQIETSGTY 116 Query: 123 EPPQGID-WICVSPKAG-------CDLKIKGGQELKL-------------VFPQVNVSPE 161 E + W+ VSPK D ++ E+K + + VS + Sbjct: 117 EVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLARAQVSAQ 176 Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 I +LQP+ T L I C WRLS+QTHK++ I Sbjct: 177 TAI-------ALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215 >gi|94266661|ref|ZP_01290338.1| Radical SAM [delta proteobacterium MLMS-1] gi|93452708|gb|EAT03259.1| Radical SAM [delta proteobacterium MLMS-1] Length = 224 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 15/117 (12%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF ++QGE AG +F R +GCNL +C +CD + + G Y Sbjct: 9 LSEIFYSIQGESTLAGYPCLFIRLAGCNL-----------RCSYCDARYTYEE--PGQSY 55 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 +++ + + E G + +TGGEPLLQ V PL+ L RG ++ +ETNGT Sbjct: 56 SLEGVLKAMAEVG-PGGRPVELVEITGGEPLLQEGVYPLLDVLLARGHQVLLETNGT 111 >gi|84623212|ref|YP_450584.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84367152|dbj|BAE68310.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 227 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIFL+LQGE AG VF R +GC L +C +CDT + GG + Sbjct: 20 ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCVYCDTAY----AFHGGEW 64 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 + + D++ E G R+ +TGGEPL Q + L+Q L G+++++ET+G ++ Sbjct: 65 H--DIDDVLAEVATHGV---RHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETSGALD 118 >gi|262278177|ref|ZP_06055962.1| radical SAM superfamily protein [Acinetobacter calcoaceticus RUH2202] gi|262258528|gb|EEY77261.1| radical SAM superfamily protein [Acinetobacter calcoaceticus RUH2202] Length = 236 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE +G VF R +GC L +C +CDT + +G G R+ Sbjct: 20 ITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERF 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 +++ + + + + Y +TGGEPL Q + + L+Q L + GF++++ET+G ++ Sbjct: 66 SLEHIIE------TATQFQTPYICVTGGEPLAQPNCLILLQRLCEAGFDVSLETSGALD 118 >gi|187735213|ref|YP_001877325.1| Radical SAM domain protein [Akkermansia muciniphila ATCC BAA-835] gi|187425265|gb|ACD04544.1| Radical SAM domain protein [Akkermansia muciniphila ATCC BAA-835] Length = 227 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 17/123 (13%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 +++ EIF ++QGEG G VF R +GCNL C +CDT + Sbjct: 6 QIHGQPEIFHSIQGEGVSQGTPCVFLRLAGCNL-----------ACSWCDTAYSWNGTVP 54 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 G R ++ A+L+ R VLTGGEPL+Q + +ETNGT Sbjct: 55 GVRLAPEKAAELVLHY------PCRRLVLTGGEPLIQQKALPALLRLLPDHAVEMETNGT 108 Query: 122 IEP 124 I P Sbjct: 109 IMP 111 >gi|188990578|ref|YP_001902588.1| Putative radical activating enzyme [Xanthomonas campestris pv. campestris str. B100] gi|167732338|emb|CAP50530.1| Putative radical activating enzyme [Xanthomonas campestris pv. campestris] Length = 227 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIFL+LQGE AG VF R +GC L +C +CDT + G G + Sbjct: 20 ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCTYCDTAY-AFHG--GEWH 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 ++D + + + R+ +TGGEPL Q + L+ L GF++++ET+G ++ Sbjct: 66 DIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLALLHKLCDAGFDVSLETSGALD 118 >gi|94264593|ref|ZP_01288377.1| Radical SAM [delta proteobacterium MLMS-1] gi|93454947|gb|EAT05184.1| Radical SAM [delta proteobacterium MLMS-1] Length = 224 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 15/117 (12%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF ++QGE AG +F R +GCNL +C +CD + + G Y Sbjct: 9 LSEIFYSIQGESTLAGYPCLFIRLAGCNL-----------RCSYCDARYTYEE--PGQSY 55 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 +++ + + E G + +TGGEPLLQ V PL+ L RG ++ +ETNGT Sbjct: 56 SLEGVLKAMAEVG-PGGRPVELVEITGGEPLLQEGVYPLLDVLLARGHQVLLETNGT 111 >gi|297568917|ref|YP_003690261.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924832|gb|ADH85642.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 241 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 19/118 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +LQGE HAG +F R +GCNL +C +CD + + G Sbjct: 31 VAEIFYSLQGESSHAGYPCIFVRLAGCNL-----------RCVYCDARYTYEEA--GTCR 77 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 + ++ I E E +TGGEPLLQ +V L+ AL ++ +ETNGTI Sbjct: 78 TIAEVMAAIAELPPVSRVE-----ITGGEPLLQEEVYSLLNALLADQRQVLLETNGTI 130 >gi|296112585|ref|YP_003626523.1| radical SAM superfamily protein [Moraxella catarrhalis RH4] gi|295920279|gb|ADG60630.1| radical SAM superfamily protein [Moraxella catarrhalis RH4] gi|326561347|gb|EGE11705.1| radical SAM superfamily protein [Moraxella catarrhalis 7169] gi|326570776|gb|EGE20801.1| radical SAM superfamily protein [Moraxella catarrhalis BC1] gi|326577706|gb|EGE27582.1| radical SAM superfamily protein [Moraxella catarrhalis O35E] Length = 266 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 25/121 (20%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +LQGE AG +F R +GC L +C +CDT + + G R+ Sbjct: 50 LTEIFYSLQGEALTAGLPTIFIRLTGCPL-----------RCHYCDTTY---SFSGGERW 95 Query: 66 NVDQLADLIEEQ--WITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +D + I + W R CV TGGEPL Q + + L+ L + G+E+++ET G + Sbjct: 96 GLDDIMTHIAQYPCW-------RVCV-TGGEPLAQPNAIALMHKLIQSGYEVSLETAGAL 147 Query: 123 E 123 Sbjct: 148 S 148 >gi|255321816|ref|ZP_05362966.1| FO synthase subunit 2 2 [Campylobacter showae RM3277] gi|255300920|gb|EET80187.1| FO synthase subunit 2 2 [Campylobacter showae RM3277] Length = 254 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 28/139 (20%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNL---------WSGREQDRLSAQCRFCDTDFVGIQ 58 E FL++QGEG +GR+A+F RF+GCNL S + + L+ CDT I+ Sbjct: 7 ESFLSIQGEGASSGRLAIFLRFAGCNLNCAGFGVRTVSPKTGETLTG----CDT----IR 58 Query: 59 GTKGGRYN------VDQLADLIEEQWITGEKEGRYCVLTGGEPLL----QVDVPLIQALN 108 G ++ D+L +I + + V+TGGEPLL Q+ + + Sbjct: 59 AVFTGHFSYQKITRADELIKII-QNLSANLRRKPIVVITGGEPLLHHKNQILLDFLNFAT 117 Query: 109 KRGFEIAVETNGTIEPPQG 127 G+E ETNGTIE G Sbjct: 118 SEGYEAHFETNGTIEVDFG 136 >gi|21232445|ref|NP_638362.1| radical activating enzyme [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767472|ref|YP_242234.1| radical activating enzyme [Xanthomonas campestris pv. campestris str. 8004] gi|21114226|gb|AAM42286.1| radical activating enzyme [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572804|gb|AAY48214.1| radical activating enzyme [Xanthomonas campestris pv. campestris str. 8004] Length = 227 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIFL+LQGE AG VF R +GC L +C +CDT + G G + Sbjct: 20 ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCTYCDTAY-AFHG--GEWH 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 ++D + + + R+ +TGGEPL Q + L+ L GF++++ET+G ++ Sbjct: 66 DIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLALLHKLCDAGFDVSLETSGALD 118 >gi|310780054|ref|YP_003968386.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926] gi|309749377|gb|ADO84038.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926] Length = 222 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 19/121 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + E F+++ GEG +G +AVF R +GCNL +C +CDT + Sbjct: 3 YKVVETFVSINGEGKKSGELAVFIRLAGCNL-----------RCSYCDTMWANQDDVVFK 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ-ALNKRGFEIAVETNGT 121 + +++ D I+ +T LTGGEPL+Q V LI L I VETNG+ Sbjct: 52 SMSKEEIYDYIKSTGVTN------VTLTGGEPLIQEGVGELIDYLLTDEKLCIEVETNGS 105 Query: 122 I 122 + Sbjct: 106 V 106 >gi|326573561|gb|EGE23524.1| radical SAM superfamily protein [Moraxella catarrhalis 101P30B1] Length = 246 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 25/121 (20%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +LQGE AG +F R +GC L +C +CDT + + G R+ Sbjct: 30 LTEIFYSLQGEALTAGLPTIFIRLTGCPL-----------RCHYCDTTY---SFSGGERW 75 Query: 66 NVDQLADLIEEQ--WITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +D + I + W R CV TGGEPL Q + + L+ L + G+E+++ET G + Sbjct: 76 GLDDIMTHIAQYPCW-------RVCV-TGGEPLAQPNAIALMHKLIQSGYEVSLETAGAL 127 Query: 123 E 123 Sbjct: 128 S 128 >gi|74318221|ref|YP_315961.1| radical activating enzyme [Thiobacillus denitrificans ATCC 25259] gi|74057716|gb|AAZ98156.1| radical activating enzyme; radical SAM family [Thiobacillus denitrificans ATCC 25259] Length = 216 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIFL+LQGE G VF R +GC L +CR+CDT + QG G Sbjct: 9 ITEIFLSLQGETSRTGLATVFVRLAGCPL-----------RCRWCDTTY-SFQG--GETV 54 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 ++D++ + G CV TGGEPL Q + +PL+ L G+ +++ET+G ++ Sbjct: 55 SLDEVL-----ARVAGFGVSVVCV-TGGEPLAQKNCLPLLARLCDAGYSVSLETSGALD 107 >gi|58581294|ref|YP_200310.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425888|gb|AAW74925.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae KACC10331] Length = 210 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIFL+LQGE AG VF R +GC L +C +CDT + GG + Sbjct: 3 ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCVYCDTAY----AFHGGEW 47 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 + + D++ E G R+ +TGGEPL Q + L+Q L G+++++ET+G ++ Sbjct: 48 H--DIDDVLAEVATHGV---RHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETSGALD 101 >gi|163754267|ref|ZP_02161390.1| GTPase ObgE [Kordia algicida OT-1] gi|161326481|gb|EDP97807.1| GTPase ObgE [Kordia algicida OT-1] Length = 253 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 33/153 (21%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-GIQGTKGG--- 63 EIF ++QGEG + G+ +VF R S CNL C +CDTD+ + T+ Sbjct: 14 EIFHSIQGEGKNLGQPSVFIRTSLCNL-----------HCIWCDTDYTWNWEKTRFAHVK 62 Query: 64 -------RYNVDQL--ADLIEEQWITGEKEG-RYCVLTGGEPLLQVD--VPLIQALNKRG 111 +Y +D++ + +EE + K G + VLTGGEP++Q+ L++ N + Sbjct: 63 DSDPLYEKYKMDEMIISLTLEEIYNEVAKSGCKNIVLTGGEPMMQLQELSALMKFFNTKA 122 Query: 112 --FEIAVETNGTIEPPQG----IDWICVSPKAG 138 + +ETNGT+ P ID VSPK Sbjct: 123 TDYFFEIETNGTLLPDATFDALIDQYNVSPKLA 155 >gi|254427312|ref|ZP_05041019.1| radical SAM domain protein [Alcanivorax sp. DG881] gi|196193481|gb|EDX88440.1| radical SAM domain protein [Alcanivorax sp. DG881] Length = 213 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +LQGE GR VF R +GC +C +CDT++ G K Sbjct: 5 LTEIFHSLQGESRTVGRPTVFVRLTGC-----------PQRCVWCDTEYAFSGGEKW--- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 LA + E+ G +Y +TGGEPL Q + +PL+ AL G+++++ET G ++ Sbjct: 51 ---TLAAIREQVAAHG---AQYVTVTGGEPLAQPNCLPLLTALCDDGYQVSLETGGAMD 103 >gi|326560168|gb|EGE10557.1| radical SAM superfamily protein [Moraxella catarrhalis 103P14B1] gi|326564255|gb|EGE14489.1| radical SAM superfamily protein [Moraxella catarrhalis 46P47B1] gi|326566195|gb|EGE16348.1| radical SAM superfamily protein [Moraxella catarrhalis 12P80B1] gi|326571649|gb|EGE21664.1| radical SAM superfamily protein [Moraxella catarrhalis BC7] gi|326573039|gb|EGE23015.1| radical SAM superfamily protein [Moraxella catarrhalis CO72] Length = 238 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 25/121 (20%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +LQGE AG +F R +GC L +C +CDT + + G R+ Sbjct: 22 LTEIFYSLQGEALTAGLPTIFIRLTGCPL-----------RCHYCDTTY---SFSGGERW 67 Query: 66 NVDQLADLIEEQ--WITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +D + I + W R CV TGGEPL Q + + L+ L + G+E+++ET G + Sbjct: 68 GLDDIMTHIAQYPCW-------RVCV-TGGEPLAQPNAIALMHKLIQSGYEVSLETAGAL 119 Query: 123 E 123 Sbjct: 120 S 120 >gi|282889934|ref|ZP_06298469.1| hypothetical protein pah_c008o017 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500127|gb|EFB42411.1| hypothetical protein pah_c008o017 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 224 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 103/229 (44%), Gaps = 51/229 (22%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +I EIF ++QGE AG F R + CNL +C +CDT + GR Sbjct: 14 NIIEIFSSVQGETSFAGLPTAFIRLAACNL-----------RCSWCDTSY------SFGR 56 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 +V L ++E+ E R +TGGEPLLQ +V PL+ L + + ++VET G++ Sbjct: 57 GDVFGLPQILEK---VDEFGCRNVCVTGGEPLLQKNVYPLMTQLCDKNYIVSVETGGSLS 113 Query: 124 PPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQVN-VSPENYIGF------DF----- 168 + + P+ L IK + +P ++ + PE+ + F D+ Sbjct: 114 IEE------IDPRVHIILDIKCPDSNMSDRNFWPNLSAIRPEDEVKFVINGYQDYLYAKE 167 Query: 169 --ERFSLQPMDGPFLEE------NTNLAISYCFQNP-KWRLSVQTHKFI 208 E+F L P L ++ +++ Q+ RL++Q HKFI Sbjct: 168 VCEKFQLFSRKIPVLLSPVFDVLDSKELVNWVLQDKLPVRLNMQLHKFI 216 >gi|288559696|ref|YP_003423182.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Methanobrevibacter ruminantium M1] gi|288542406|gb|ADC46290.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Methanobrevibacter ruminantium M1] Length = 202 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 97/217 (44%), Gaps = 31/217 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF + QGEG + G A F R GCNL C +CDTD + Sbjct: 6 VSEIFTSFQGEGPYIGTPATFLRLYGCNL-----------NCPWCDTDISTYEIL----- 49 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI- 122 +VD++ +++ Q R V+TGGEP LQ++ LI+ + +I +ETNG+I Sbjct: 50 SVDEVFEILMTQ--MEFNNIRILVITGGEPTLQMEELKRLIKEIPDE-IKIQIETNGSIF 106 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVF------PQVNVSPENYIGFDFERFSLQPM 176 E ID++ +SPK + K + VF Q ++ Y+ + + Sbjct: 107 EYVPEIDYV-ISPKEDKETVFKNYYKYDNVFFKFVICSQEDIDEVIYLKDKYNYDKTIWL 165 Query: 177 DGPFLE--ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 G F + E +L +LSVQTHK++ R Sbjct: 166 QGEFSKDGEMADLIRENFPHLENVKLSVQTHKYLNQR 202 >gi|291522438|emb|CBK80731.1| Organic radical activating enzymes [Coprococcus catus GD/7] Length = 223 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 25/126 (19%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + Y + E F+++ GEG AG++AVF RF GCNL C +CDT + Sbjct: 3 RTYEVVEHFVSINGEGPLAGQLAVFVRFKGCNL-----------SCLYCDTKWANEPDVP 51 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-----GFEIAV 116 +++ I E + R LTGGEPL D P I L ++ + + Sbjct: 52 ARVMTAEEIHQAIMETGV------RNVTLTGGEPL---DRPHISELLEKLAADHSLHVEI 102 Query: 117 ETNGTI 122 ETNG++ Sbjct: 103 ETNGSV 108 >gi|326569745|gb|EGE19795.1| radical SAM superfamily protein [Moraxella catarrhalis BC8] Length = 238 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 25/121 (20%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +LQGE AG +F R +GC L +C +CDT + + G R+ Sbjct: 22 LTEIFYSLQGEALTAGLPTIFIRLTGCPL-----------RCHYCDTTY---SFSGGERW 67 Query: 66 NVDQLADLIEEQ--WITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +D + I + W R CV TGGEPL Q + + L+ L + G+E+++ET G + Sbjct: 68 GLDDIMTHIAQYPCW-------RVCV-TGGEPLAQPNAITLMHKLIQSGYEVSLETAGAL 119 Query: 123 E 123 Sbjct: 120 S 120 >gi|254787332|ref|YP_003074761.1| radical SAM domain-containing protein [Teredinibacter turnerae T7901] gi|237685298|gb|ACR12562.1| radical SAM domain protein [Teredinibacter turnerae T7901] Length = 214 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 21/124 (16%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M I EIF +LQGE G VF R +GC L +C++CD+++ G Sbjct: 1 MTDLRITEIFHSLQGEARTVGVPTVFVRLTGCPL-----------RCQYCDSEYAFFGGE 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119 K ++D++ E + G + CV TGGEPL Q + +PL++ L G +++ET+ Sbjct: 50 KK---SLDEI-----EALVIGFRCSHVCV-TGGEPLAQPNCIPLLERLCDAGLAVSLETS 100 Query: 120 GTIE 123 G ++ Sbjct: 101 GAMD 104 >gi|289661912|ref|ZP_06483493.1| putative radical activating enzyme [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 227 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIFL+LQGE AG VF R +GC L +C +CDT + G G + Sbjct: 20 ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAY-AFHG--GEWH 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 ++D + + + R+ +TGGEPL Q + L+Q L G+++++ET+G ++ Sbjct: 66 DIDAIVAEVARHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETSGALD 118 >gi|213615976|ref|ZP_03371802.1| hypothetical protein SentesTyp_16494 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 178 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 79/174 (45%), Gaps = 35/174 (20%) Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + K G + + L +I Q T R+ V+TGGEP + +PL L K GF +E Sbjct: 18 ESDKWGAASSEDLLAVINRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKSGFSCQIE 73 Query: 118 TNGTIE---PPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVNVSPENYIG--FDFERF 171 T+GT E P W+ VSPK + ++GG + L + N ++ +G D E Sbjct: 74 TSGTHEVRCTPNT--WVTVSPK----VNMRGGYDVLSQALERAN-EIKHPVGRVRDIEAL 126 Query: 172 ---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 127 DELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 177 >gi|308273462|emb|CBX30064.1| hypothetical protein N47_D28730 [uncultured Desulfobacterium sp.] Length = 219 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 22/129 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF ++QGE ++G F R +GCNL +C +CDT + +G Sbjct: 10 INEIFYSIQGESLYSGLPCAFIRLAGCNL-----------RCAYCDTKYA---YNEGSEI 55 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124 D L I E +TGGEPL+Q + P LI+ L F + +ETNG+++ Sbjct: 56 ETDHLVKKISEFGCP------LVEITGGEPLIQEETPVLIEKLLDNKFSVLLETNGSLDI 109 Query: 125 PQGIDWICV 133 ID C+ Sbjct: 110 SY-IDKRCI 117 >gi|237737359|ref|ZP_04567840.1| radical SAM domain-containing protein [Fusobacterium mortiferum ATCC 9817] gi|229421221|gb|EEO36268.1| radical SAM domain-containing protein [Fusobacterium mortiferum ATCC 9817] Length = 222 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 23/127 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + + EIF ++ GEG G++A+F R CNL C +CDT + Sbjct: 1 MANFKVVEIFESINGEGRRVGQLAIFIRLQKCNL-----------NCSYCDTRWANGDDA 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG----FEIAV 116 + D++ D I + I + LTGGEPLL DV ++ L K G + + Sbjct: 50 PYTLMSEDKIYDRILKSGI------KNITLTGGEPLLHKDVEIL--LEKIGENPNLSLEI 101 Query: 117 ETNGTIE 123 ETNG+IE Sbjct: 102 ETNGSIE 108 >gi|291519768|emb|CBK74989.1| Organic radical activating enzymes [Butyrivibrio fibrisolvens 16/4] Length = 222 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 19/124 (15%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M +Y + E F+++ GEG HAG +AVF R GCNL C +CDT + Sbjct: 1 MSVYYVVEKFVSINGEGQHAGELAVFIRLRGCNL-----------ACSYCDTRWACSYEA 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFEIAVET 118 + ++ D ++ + LTGGEPL D+ L++A ++ +ET Sbjct: 50 PAEQMTEVEILDYVKSTGVN------RVTLTGGEPLKARDIKDLLRAFAAEPNIKVEIET 103 Query: 119 NGTI 122 NG++ Sbjct: 104 NGSV 107 >gi|320539607|ref|ZP_08039271.1| putative conserved protein [Serratia symbiotica str. Tucson] gi|320030219|gb|EFW12234.1| putative conserved protein [Serratia symbiotica str. Tucson] Length = 250 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 15/147 (10%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGTKG---G 63 F TLQGEG G A+F R GC + W + R D + ++ + G Sbjct: 63 FQTLQGEGFFTGVPAIFIRLQGCPVGCSWCDTKHTWDKEVNREVDMQRILVKTEESATWG 122 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 + +QL ++ +Q T R+ V+TGGEP + VPL L ++G+ +ET+GT E Sbjct: 123 SASAEQLLAVMRQQGYTA----RHVVITGGEPCIYDLVPLTALLEQQGYGCQIETSGTYE 178 Query: 124 PPQGID-WICVSPKAGCDLKIKGGQEL 149 + W+ VSPK + ++GG ++ Sbjct: 179 IRCSVKTWVTVSPK----VNMRGGMKV 201 >gi|171185411|ref|YP_001794330.1| radical SAM domain-containing protein [Thermoproteus neutrophilus V24Sta] gi|170934623|gb|ACB39884.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta] Length = 216 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 28/170 (16%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MKL + EIF +LQGEG + GR AVF R +GC + +CR+CDT + Sbjct: 1 MKL-RVLEIFASLQGEGVNLGRPAVFIRLAGCPI-----------RCRYCDTKY-SWDPL 47 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 G + +++ G + V+TGGEPL+ ++ + +R + VET+G Sbjct: 48 GGEELDAEEVVRRAAAHGPLG-----HVVITGGEPLIWRNLHELACPLRRLGTVEVETSG 102 Query: 121 TIEP-PQ---GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 P PQ +D+ VSPK G E L P SP+ + F Sbjct: 103 VYPPTPQLDACVDFYDVSPKLS-----NAGVEAPL-HPHYPRSPKAWFKF 146 >gi|15838492|ref|NP_299180.1| hypothetical protein XF1894 [Xylella fastidiosa 9a5c] gi|9106987|gb|AAF84700.1|AE004009_7 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 227 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 23/120 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIFL+LQGE G VF R +GC L +C++CDT + GG + Sbjct: 20 ISEIFLSLQGEANSVGWPTVFVRLTGCPL-----------RCQYCDTAY----AFHGGEW 64 Query: 66 -NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 ++D + + + R+ +TGGEPL Q + L++ L GFE+++ET+G ++ Sbjct: 65 CSIDTIVSEVRSYGV------RHVCVTGGEPLAQKRCLLLLEKLCDAGFEVSLETSGALD 118 >gi|125975585|ref|YP_001039495.1| radical SAM family protein [Clostridium thermocellum ATCC 27405] gi|256005910|ref|ZP_05430855.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360] gi|281416597|ref|ZP_06247617.1| Radical SAM domain protein [Clostridium thermocellum JW20] gi|125715810|gb|ABN54302.1| Radical SAM [Clostridium thermocellum ATCC 27405] gi|255990114|gb|EEU00251.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360] gi|281407999|gb|EFB38257.1| Radical SAM domain protein [Clostridium thermocellum JW20] gi|316939704|gb|ADU73738.1| Radical SAM domain protein [Clostridium thermocellum DSM 1313] Length = 210 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 27/120 (22%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIFL++QGE AG VF RF+GCNL +C +CDT RY Sbjct: 3 VNEIFLSIQGESLSAGFPTVFVRFTGCNL-----------RCSYCDT-----------RY 40 Query: 66 NVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 + D+ + K+ Y LTGGEPLLQ ++ L++ L+ + + +ETNG++ Sbjct: 41 AYKEGEDMTPSEVFEEIKKLHYKRVCLTGGEPLLQKELGQLLEFLD--DYIVTIETNGSV 98 >gi|297539673|ref|YP_003675442.1| Radical SAM domain-containing protein [Methylotenera sp. 301] gi|297259020|gb|ADI30865.1| Radical SAM domain protein [Methylotenera sp. 301] Length = 212 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 22/124 (17%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MKL + EIF ++QGE G VF R +GC + +C +CDT + G+ Sbjct: 1 MKL-KVHEIFYSIQGESSRVGLPTVFVRLTGCPM-----------RCVYCDTAYAFSGGS 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 N+ ++AD++ + E +Y +TGGEPL Q D L++ L G+ +++ET Sbjct: 49 -----NI-EIADILAK---VAEFGTKYVTVTGGEPLAQKDCHFLLKDLCDAGYSVSLETG 99 Query: 120 GTIE 123 G I+ Sbjct: 100 GAID 103 >gi|320530179|ref|ZP_08031249.1| radical SAM domain protein [Selenomonas artemidis F0399] gi|320137612|gb|EFW29524.1| radical SAM domain protein [Selenomonas artemidis F0399] Length = 243 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 32/157 (20%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-VGIQGT--- 60 +I EIF ++QGEG + G VF R GCNL C +CDT+ +G T Sbjct: 4 NIIEIFSSIQGEGKYVGCRQVFVRLEGCNL-----------DCTYCDTENEIGRHPTCMV 52 Query: 61 --KGGRY---------NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 G + +++ +A L+ + + G+ +TGGEPLL VP I+AL + Sbjct: 53 EMPAGSHELHSYANPLSIETVAALVAQ--VAGDVPHHSLSVTGGEPLLH--VPFIRALKE 108 Query: 110 R-GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 R I +ETNGT+ CVS D+K+ G Sbjct: 109 RVPLPIFLETNGTLHDALARCIDCVS-YISMDIKLPG 144 >gi|225850855|ref|YP_002731089.1| radical SAM domain protein [Persephonella marina EX-H1] gi|225645393|gb|ACO03579.1| radical SAM domain protein [Persephonella marina EX-H1] Length = 214 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 23/125 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M+ +++ EIF +++GEG G F R GCNL +C +CDT + Sbjct: 1 MEKFNVVEIFPSIEGEGSLIGYPVTFIRLEGCNL-----------RCEWCDTPY------ 43 Query: 61 KGGRYNVDQLADLIEEQWITGEKE--GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVE 117 Y+ + L ++ I+ K R LTGGEPL+ +V L+ + K G+ + +E Sbjct: 44 ---SYDGKTFSKLTSDEIISELKRYPNRKVCLTGGEPLICENVDKLMTEIIKEGYSLIIE 100 Query: 118 TNGTI 122 TNGT+ Sbjct: 101 TNGTV 105 >gi|303229411|ref|ZP_07316201.1| radical SAM domain family protein [Veillonella atypica ACS-134-V-Col7a] gi|303230757|ref|ZP_07317504.1| radical SAM domain family protein [Veillonella atypica ACS-049-V-Sch6] gi|302514517|gb|EFL56512.1| radical SAM domain family protein [Veillonella atypica ACS-049-V-Sch6] gi|302515947|gb|EFL57899.1| radical SAM domain family protein [Veillonella atypica ACS-134-V-Col7a] Length = 220 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 21/124 (16%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 ++ E+F ++ GEG G + F R CN+ +C +CDT + + Sbjct: 6 NVIELFSSIDGEGKRQGFLTTFLRLHDCNI-----------RCSYCDTLYSYGPESTFES 54 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRG--FEIAVETNG 120 +V +AD+IE+ E +TGGEPLLQ + LI L +R ++ +ETNG Sbjct: 55 MSVQAVADVIEQL------ENHRITVTGGEPLLQEPAIIELIDELTRRNARYDFNIETNG 108 Query: 121 TIEP 124 TI P Sbjct: 109 TIIP 112 >gi|323497330|ref|ZP_08102348.1| organic radical activating enzyme [Vibrio sinaloensis DSM 21326] gi|323317413|gb|EGA70406.1| organic radical activating enzyme [Vibrio sinaloensis DSM 21326] Length = 216 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 94/230 (40%), Gaps = 43/230 (18%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68 +F T+QGEG + G +VF R C + C +CDT + + D Sbjct: 1 MFETIQGEGVYTGVPSVFVRLQECPV-----------GCAWCDTKQTW-EALPEDETSFD 48 Query: 69 QLADLIEEQ--WITGEKEG------------RYCVLTGGEPLLQVDVPLIQALNKRGFEI 114 ++ ++ W + EG ++ V+TGGEP + PL +A G + Sbjct: 49 RIMVKTQDSPTWCSTSAEGIVNQYRVQGYTAKHIVITGGEPCVYDLRPLTEAFEAIGCQC 108 Query: 115 AVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVN--VSPENYIGFDFE-- 169 +ET+GT E + W+ VSPK K+ L ++ V+ E I E Sbjct: 109 QIETSGTSEVLTSDNTWVTVSPKVAMKGKLPVLDSALLRADEIKHPVATEKDIDQLDELI 168 Query: 170 ---------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ T L I C + WRLS+QTHK++ I Sbjct: 169 KRAQVPKQTTIALQPISQK--PRATQLCIDVCVKR-NWRLSIQTHKYLSI 215 >gi|134299611|ref|YP_001113107.1| radical SAM domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052311|gb|ABO50282.1| Radical SAM domain protein [Desulfotomaculum reducens MI-1] Length = 247 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 30/159 (18%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT------DFVGIQGTK 61 EIF ++QGEG + G +F RF+GCN W +C FCDT ++ ++ T Sbjct: 8 EIFSSVQGEGPYVGLRQIFIRFAGCN-W----------KCAFCDTPTNPRPEYFTMEKTP 56 Query: 62 GGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRG 111 G R ++L++LI++ + LTGGEPL+ D L+ AL Sbjct: 57 GQRDFIQVANPVKPERLSELIKQYYNLSHHHS--ISLTGGEPLIYHDYITRLVPALQGTR 114 Query: 112 FEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 I +ETNGT+ P + I + D+K++ + K Sbjct: 115 KGIYLETNGTL-PEELASVINLCNMISMDIKLESATKEK 152 >gi|258516745|ref|YP_003192967.1| Radical SAM domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257780450|gb|ACV64344.1| Radical SAM domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 211 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 20/117 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +LQGEG AG VF R +GCNL +C +CDT + +G + Sbjct: 3 VNEIFYSLQGEGITAGYPTVFIRLTGCNL-----------RCLYCDTVYAYEEGQE---M 48 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +V +AD + E Y +TGGEPL Q + + + +ETNG++ Sbjct: 49 SVKDVADRVHEYG------AHYVCITGGEPLQQKAELKLLLSLLNRYTVTIETNGSL 99 >gi|217969210|ref|YP_002354444.1| radical SAM protein [Thauera sp. MZ1T] gi|217506537|gb|ACK53548.1| Radical SAM domain protein [Thauera sp. MZ1T] Length = 223 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 68/147 (46%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G VF R +GC L +C +CDT + GG Sbjct: 16 ITEIFASLQGESTRVGLPTVFVRLTGCPL-----------RCTWCDTAY----AFSGGET 60 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 L D++ E G R+ +TGGEPL Q +PL+ AL G ++++ET+G Sbjct: 61 RT--LDDILAEVASHGL---RHVCVTGGEPLAQKGCLPLLAALCDAGHDVSLETSG---- 111 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 +D V P+ DLK G EL Sbjct: 112 --ALDIAGVDPRVSRIVDLKAPGSGEL 136 >gi|257095755|ref|YP_003169396.1| Radical SAM domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048279|gb|ACV37467.1| Radical SAM domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 219 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIFL+LQGE G VF R +GC L +C +CDT + GGR Sbjct: 12 ISEIFLSLQGETSRVGLPTVFVRLTGCPL-----------RCVWCDTAY----AFAGGRT 56 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123 L D++ E + R+ +TGGEPL Q + L+ L G+ +++ET+G ++ Sbjct: 57 MT--LPDILAE---VARHDVRHVCVTGGEPLAQPACLALLSELCDTGYAVSLETSGALD 110 >gi|294626853|ref|ZP_06705445.1| radical activating enzyme [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598867|gb|EFF43012.1| radical activating enzyme [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 227 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 29/146 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIFL+LQGE AG VF R +GC L +C +CDT + G G + Sbjct: 20 ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAY-AFHG--GQWH 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 ++D + + + R+ +TGGEPL Q + L++ L G+++++ET+G Sbjct: 66 DIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETSG---- 115 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQE 148 +D V P+ D+K G E Sbjct: 116 --ALDVSAVDPRVSRVVDIKTPGSGE 139 >gi|254000097|ref|YP_003052160.1| Radical SAM domain-containing protein [Methylovorus sp. SIP3-4] gi|253986776|gb|ACT51633.1| Radical SAM domain protein [Methylovorus sp. SIP3-4] Length = 212 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 30/153 (19%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MKL I EIF +LQGE G VF R +GC + +C +CDT + G+ Sbjct: 1 MKL-RIHEIFHSLQGESSRVGLPTVFVRLTGCPM-----------RCVYCDTAYAFHGGS 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 ++ D++++ E Y +TGGEPL Q D L+ L G+ +++ET Sbjct: 49 SM------EIDDIMQK---VAEYGAHYVTVTGGEPLAQRDCHVLLTRLCDAGYSVSLETG 99 Query: 120 GTIEPPQGIDWICVSPKAGC--DLKIKGGQELK 150 G +D V P+ D+K G EL+ Sbjct: 100 G------AMDIANVDPRVSVILDIKTPGSGELE 126 >gi|149196484|ref|ZP_01873538.1| queuosine biosynthesis protein [Lentisphaera araneosa HTCC2155] gi|149140164|gb|EDM28563.1| queuosine biosynthesis protein [Lentisphaera araneosa HTCC2155] Length = 212 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 21/122 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EI+ +LQGE +G +F R SGCNL +C +CDT++ T G Sbjct: 1 MLYITEIYKSLQGESTWSGLACIFIRLSGCNL-----------RCSWCDTEY---SFTSG 46 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 + ++D + D +E+ +TGGEPL Q V L+Q L G + VET G Sbjct: 47 DKLSIDNILDRVEQL------NCDLVEVTGGEPLAQDKVGELVQKLLDLGKTVLVETGGH 100 Query: 122 IE 123 ++ Sbjct: 101 MD 102 >gi|257454238|ref|ZP_05619508.1| radical SAM domain protein [Enhydrobacter aerosaccus SK60] gi|257448411|gb|EEV23384.1| radical SAM domain protein [Enhydrobacter aerosaccus SK60] Length = 240 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 31/147 (21%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +LQGE AG +F R +GC L +C +CDT++ + G + Sbjct: 24 VTEIFYSLQGEALSAGLPTIFIRLTGCPL-----------RCVYCDTEYAFVGGERMSLA 72 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI-- 122 + + Q R C LTGGEPL Q + + L+ L G+EI++ET+G + Sbjct: 73 GILAVCQSFPCQ--------RIC-LTGGEPLAQPNAIALMNLLLAHGYEISLETSGALSV 123 Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQE 148 E P + + D+K QE Sbjct: 124 AEVPTAVSKV-------MDIKTPSSQE 143 >gi|118602444|ref|YP_903659.1| radical SAM domain-containing protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567383|gb|ABL02188.1| Radical SAM domain protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 213 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 21/119 (17%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +I EIF +LQGEG G +VF R +GC L +C +CDT++ KG Sbjct: 7 NINEIFYSLQGEGREVGLPSVFIRLTGCPL-----------RCTYCDTEY----AFKGN- 50 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 N+ + ++I++ + + Y +TGGEPL Q + L+ L K +++++ET+G+I Sbjct: 51 -NLMAIDEIIKK---IKQYDTPYICVTGGEPLAQKNCCLLLNELVKNNYQVSLETSGSI 105 >gi|323212709|gb|EFZ97526.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] Length = 121 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 59/130 (45%), Gaps = 24/130 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLW---SGREQDRLSAQCRFC 50 Y I E+F TLQGEG G A+F R GC + W S RE S + Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTK 62 Query: 51 DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110 ++D K G + + L +I Q T R+ V+TGGEP + +PL L K Sbjct: 63 ESD-------KWGAASSEDLLAVINRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKS 111 Query: 111 GFEIAVETNG 120 GF +ET+G Sbjct: 112 GFSCQIETSG 121 >gi|325929354|ref|ZP_08190484.1| organic radical activating enzyme [Xanthomonas perforans 91-118] gi|325540266|gb|EGD11878.1| organic radical activating enzyme [Xanthomonas perforans 91-118] Length = 227 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIFL+LQGE AG VF R +GC L +C +CDT + G G + Sbjct: 20 ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAY-AFHG--GQWH 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 ++D + + + R+ +TGGEPL Q + L++ L G+++++ET+G ++ Sbjct: 66 DIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETSGALD 118 >gi|254516700|ref|ZP_05128759.1| radical SAM domain protein [gamma proteobacterium NOR5-3] gi|219675123|gb|EED31490.1| radical SAM domain protein [gamma proteobacterium NOR5-3] Length = 226 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 27/121 (22%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G VF R +GC L +C +CDT++ GG Sbjct: 18 ITEIFYSLQGEARTVGLPTVFVRLTGCPL-----------RCLYCDTEY----AFHGG-- 60 Query: 66 NVDQLADLIEEQWITG---EKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 +++ + I G + Y +TGGEPL Q + +PL+ L +G+E+++ET+G Sbjct: 61 ------EIMTFEHIAGQVAQHAPAYVTVTGGEPLAQPNCLPLLSLLCDQGYEVSLETSGA 114 Query: 122 I 122 + Sbjct: 115 M 115 >gi|319786288|ref|YP_004145763.1| radical SAM protein [Pseudoxanthomonas suwonensis 11-1] gi|317464800|gb|ADV26532.1| Radical SAM domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 219 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 31/148 (20%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR- 64 I EIFL+LQGE AG VF R +GC L +C++CDT + GG+ Sbjct: 12 ITEIFLSLQGEANAAGWPTVFVRLTGCPL-----------RCQYCDTAY----AFHGGQW 56 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 + +D + + + R+ +TGGEPL Q + L++ L G ++++ET+G Sbjct: 57 WEIDAILAEVARHGV------RHVCVTGGEPLAQKRCLDLLRRLCDAGHDVSLETSG--- 107 Query: 124 PPQGIDWICVSPKAG--CDLKIKGGQEL 149 +D V P+ DLK G E+ Sbjct: 108 ---ALDIAGVDPRVSRVVDLKTPGSAEM 132 >gi|294665414|ref|ZP_06730702.1| radical activating enzyme [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604825|gb|EFF48188.1| radical activating enzyme [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 227 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 29/146 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIFL+LQGE AG VF R +GC L +C +CDT + G G + Sbjct: 20 ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAY-AFHG--GQWH 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 ++D + + + R+ +TGGEPL Q + L++ L G+++++ET+G Sbjct: 66 DIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETSG---- 115 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQE 148 +D V P+ D+K G E Sbjct: 116 --ALDVSAVDPRVSRVVDIKTPGSGE 139 >gi|78048825|ref|YP_365000.1| putative radical activating enzyme [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037255|emb|CAJ25000.1| putative radical activating enzyme [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 227 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIFL+LQGE AG VF R +GC L +C +CDT + G G + Sbjct: 20 ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAY-AFHG--GQWH 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 ++D + + + R+ +TGGEPL Q + L++ L G+++++ET+G ++ Sbjct: 66 DIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETSGALD 118 >gi|50085673|ref|YP_047183.1| putative radical activating enzyme [Acinetobacter sp. ADP1] gi|49531649|emb|CAG69361.1| putative radical activating enzyme [Acinetobacter sp. ADP1] Length = 245 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C +CDT + +G G R Sbjct: 29 ITEIFYSLQGEANAAGLPTVFIRLTGCPL-----------RCTYCDTTY-SFEG--GERL 74 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 ++D++ + + Y +TGGEPL Q + + L+ L+ G ++++ET+GT++ Sbjct: 75 SLDEIIN------TALSYKTPYICVTGGEPLAQPNCLILLSRLSDLGCQVSLETSGTLD 127 >gi|158520514|ref|YP_001528384.1| radical SAM domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158509340|gb|ABW66307.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3] Length = 212 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 22/122 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M L+ + E+F ++QGE AG F R +GCNL C +CDT + GT Sbjct: 1 MSLH-VSELFFSIQGESLDAGLACAFVRLAGCNLC-----------CAYCDTAYARQGGT 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 + ++ D + + +TGGEPLLQ + P LIQ L G+ + +ETN Sbjct: 49 P---MEIPEILDRVARFGCS------LVEITGGEPLLQKETPLLIQRLLSVGYRVLLETN 99 Query: 120 GT 121 GT Sbjct: 100 GT 101 >gi|327398276|ref|YP_004339145.1| Radical SAM domain-containing protein [Hippea maritima DSM 10411] gi|327180905|gb|AEA33086.1| Radical SAM domain protein [Hippea maritima DSM 10411] Length = 211 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 23/134 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF ++QGEG G A+F R GCNL +C FCDT + + Sbjct: 5 VSEIFYSIQGEGSKIGYKAIFIRLCGCNL-----------KCPFCDTKYA---LSCKNPM 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 N ++ + I + + TGGEP L+ + + +ETNGT+ P Sbjct: 51 NAHEIYEKI------SRFPAKNIIFTGGEPTLKDNFMAYFMKKYNNYSYFLETNGTLFPK 104 Query: 126 QGIDW---ICVSPK 136 + I+ I VSPK Sbjct: 105 KSINLFSHIVVSPK 118 >gi|119871554|ref|YP_929561.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM 4184] gi|119672962|gb|ABL87218.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184] Length = 216 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 37/172 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + EIF +LQGEG + G+ AVF R +GC + +CR+CDT Sbjct: 3 FRVVEIFASLQGEGVNLGKPAVFIRLAGCPI-----------RCRYCDT----------- 40 Query: 64 RYNVDQLADLIEEQWITGEKEGRY-----CVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 +Y+ D L + + ++ Y V+TGGEPL+ ++ + +R + VET Sbjct: 41 KYSWDPLGGVEIDAEEVVQRAAAYGQLGHVVITGGEPLIWRNLHELACPLRRLGTVEVET 100 Query: 119 NGTIEP-PQ---GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 +G P PQ +D+ VSP K+ + L+ P SP+ + F Sbjct: 101 SGVYPPTPQLDACVDFYDVSP------KLSNARVDALLHPHYPRSPKAWFKF 146 >gi|86740458|ref|YP_480858.1| radical SAM family protein [Frankia sp. CcI3] gi|86567320|gb|ABD11129.1| Radical SAM [Frankia sp. CcI3] Length = 251 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 26/203 (12%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT----DFVGIQGT 60 + EIF T+QGEG GR VF R GCNL C +CDT D+ G+ T Sbjct: 21 VNEIFGPTVQGEGPSTGRRCVFLRLGGCNL-----------TCSWCDTPYTWDWWGVSDT 69 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQVD--VPLIQALNKRGFEIA 115 G R++ + + + G V++GGEPL Q + L+ L G E+ Sbjct: 70 -GRRFDPGRELHAMSAAQVGDRLRGLGSGLVVISGGEPLSQQRRLLGLVTGLVDDGIEVE 128 Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175 +ETNGT+ P + + V+ L G E + + P+ + + G RF Sbjct: 129 IETNGTVAPLEELAESGVAFNVSVKLAHSGVAEPRRLVPEALAA---FAGNPSARFKFVC 185 Query: 176 MDGPFLEENTNLAISYCFQNPKW 198 D L+E L + P W Sbjct: 186 ADRDDLDEVGTLVDRFNLA-PVW 207 >gi|303242851|ref|ZP_07329315.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] gi|302589597|gb|EFL59381.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] Length = 209 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 94/228 (41%), Gaps = 54/228 (23%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIFL++QGE G +F RF+GCNL +C +CDT + G + Y Sbjct: 3 VNEIFLSIQGESISTGFPTIFVRFTGCNL-----------RCCYCDTTYAYEDGKEMSPY 51 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT--- 121 V + + R C+ TGGEPLLQ D+ L++ L + + +ETNG Sbjct: 52 EVFEEVKRFHYK--------RVCI-TGGEPLLQKDLNELLRLLGD--YAVTIETNGAVPI 100 Query: 122 --IEPPQGIDWI--CVSPKAGCDLK--------IKGGQELKLVFPQVN--------VSPE 161 I +G W+ P +GC + ++ E+K V N + Sbjct: 101 EDITLCEGHSWVMDMKVPSSGCSNQMVLDNFRYLRDKDEIKFVIGDRNDYDWAKGIIKNH 160 Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP-KWRLSVQTHKFI 208 +Y G + P+ G N A+S+ + R VQ HK I Sbjct: 161 HYKG----TITFSPVYGRI---NCEDAVSWILADRLDVRFQVQLHKII 201 >gi|260778537|ref|ZP_05887429.1| queuosine Biosynthesis QueE Radical SAM [Vibrio coralliilyticus ATCC BAA-450] gi|260604701|gb|EEX30996.1| queuosine Biosynthesis QueE Radical SAM [Vibrio coralliilyticus ATCC BAA-450] Length = 216 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 90/230 (39%), Gaps = 43/230 (18%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68 +F T+QGEG G +VF R C + C +CDT + R + Sbjct: 1 MFETIQGEGVFTGVPSVFVRLQICPV-----------GCAWCDTKQTWDATPQDERPLAE 49 Query: 69 QLADL-------------IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115 LA I EQ+ + ++ V+TGGEP + PL +A G Sbjct: 50 VLAKTEDSPTWCSVSGGDIIEQYRQQGYQAKHIVITGGEPCIYDLRPLTEAFEAIGCRCQ 109 Query: 116 VETNGTIEPPQGID--WICVSPKAG---------CDL----KIKGGQELKLVFPQVNVSP 160 +ET+GT P + W+ VSPK C L +IK Q++ Sbjct: 110 IETSGT-SPILASENTWVTVSPKVAMKGKLPVLDCALLRANEIKHPVATDKDIEQLDALI 168 Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 169 ERAGVPESTTIALQPISQK--PRATQLCIDTCIAR-NWRLSIQTHKYLSI 215 >gi|218781985|ref|YP_002433303.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01] gi|218763369|gb|ACL05835.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01] Length = 215 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 93/226 (41%), Gaps = 50/226 (22%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 EIF +QGE + G VF R SGCNL +CR+CDT G Y+ Sbjct: 7 EIFYGIQGESTYQGMPCVFIRLSGCNL-----------RCRWCDT---------GYAYDA 46 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQ 126 + E G+ +TGGEPLLQ + P L+ A G + +ETNG+ + + Sbjct: 47 GLTMSISEIMEKAGQFGCPIVEVTGGEPLLQKETPALVDAFLNIGLLVLLETNGSQDIAK 106 Query: 127 GIDWICVS------PKAGCD--------LKIKGGQELKLVFPQVNVSPENY--------- 163 +D C+ P +G + ++ ELK V S E+Y Sbjct: 107 -VDSRCIRIVDVKCPSSGMEEHNDYSNLSRMTEKDELKFVI----ASREDYEFARKRVRL 161 Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNP-KWRLSVQTHKFI 208 + FD R + F E + + Q+ + RL +Q HKFI Sbjct: 162 LDFDGCRMNAIHFSPVFGELDPKTLAEWILQDRLEVRLHLQMHKFI 207 >gi|82703824|ref|YP_413390.1| radical SAM family protein [Nitrosospira multiformis ATCC 25196] gi|82411889|gb|ABB75998.1| Radical SAM [Nitrosospira multiformis ATCC 25196] Length = 234 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIFL+LQGE G VF R +GC L +C +CDT + +G + Sbjct: 27 VNEIFLSLQGETSRVGLPTVFVRLTGCPL-----------RCGYCDTAYAFHEGERL--- 72 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 LA ++ E R+ +TGGEPL Q + + L++ L G+ +++ET G ++ Sbjct: 73 ---SLAAILME---VARHGARHVTVTGGEPLAQKECLALLRLLCDAGYSVSMETGGALD 125 >gi|255745752|ref|ZP_05419700.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholera CIRS 101] gi|262158970|ref|ZP_06030082.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae INDRE 91/1] gi|255736827|gb|EET92224.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholera CIRS 101] gi|262029155|gb|EEY47807.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae INDRE 91/1] Length = 216 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 92/229 (40%), Gaps = 41/229 (17%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ-GTKG 62 +F +QGEG G AVF R GC + W +Q + L + T F I T Sbjct: 1 MFEIIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLDSD----QTSFSQILLKTND 56 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 A + +++ + ++ V+TGGEP + L QA G +ET+GT Sbjct: 57 APTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQIETSGTY 116 Query: 123 EPPQGID-WICVSPKAGC-------DLKIKGGQELKL-------------VFPQVNVSPE 161 E + W+ VSPK D ++ E+K + + VS + Sbjct: 117 EVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLARAQVSAQ 176 Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 I +LQP+ T L I C WRLS+QTHK++ I Sbjct: 177 TAI-------ALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215 >gi|237755689|ref|ZP_04584298.1| radical SAM domain protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237692139|gb|EEP61138.1| radical SAM domain protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 217 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 21/121 (17%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + EIF +++GEG G VF R GCNL +C +CDT + G Sbjct: 10 FKVVEIFRSVEGEGRWVGLPVVFIRLEGCNL-----------RCSWCDTPY----SYTGE 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGT 121 + + + D+++E I R C+ TGGEP +DV L++ L + +++ +ETNGT Sbjct: 55 NFKLLSITDILDE--IKKYNLKRVCI-TGGEPFFTENLDV-LVENLIENSYQVFIETNGT 110 Query: 122 I 122 + Sbjct: 111 L 111 >gi|322667352|gb|EFY63516.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] Length = 141 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 31/147 (21%) Query: 85 GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE---PPQGIDWICVSPKAGCDL 141 R+ V+TGGEP + +PL L K GF +ET+GT E P W+ VSPK + Sbjct: 4 ARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVCCTPNT--WVTVSPK----V 57 Query: 142 KIKGGQE-LKLVFPQVNVSPENYIG--FDFERF---------------SLQPMDGPFLEE 183 ++GG + L + N ++ +G D E +LQP+ E+ Sbjct: 58 NMRGGYDVLSQALERAN-EIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQK--ED 114 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 T L I C WRLS+QTHK++ I Sbjct: 115 ATRLCIETCIAR-NWRLSMQTHKYLNI 140 >gi|71901732|ref|ZP_00683804.1| Radical SAM [Xylella fastidiosa Ann-1] gi|71728504|gb|EAO30663.1| Radical SAM [Xylella fastidiosa Ann-1] Length = 217 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 23/120 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIFL+LQGE G VF R +GC L +C++CDT + GG + Sbjct: 10 ISEIFLSLQGEANSVGWPTVFVRLTGCPL-----------RCQYCDTSY----AFHGGEW 54 Query: 66 -NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 ++D + + + + R+ +TGGEPL Q + L++ L FE+++ET+G ++ Sbjct: 55 RSIDTIVNEVRRYGV------RHVCVTGGEPLAQKRCLLLLEKLCDADFEVSLETSGALD 108 >gi|157165265|ref|YP_001466044.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Campylobacter concisus 13826] gi|112801208|gb|EAT98552.1| radical SAM domain protein [Campylobacter concisus 13826] Length = 251 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 12/125 (9%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNL-WSG----REQDRLSAQCRFCDTDFVGIQGT-K 61 E FL++QGEG + GR+AVF RF GCNL SG + + CD+ +G Sbjct: 9 EAFLSIQGEGAYQGRLAVFLRFLGCNLNCSGFGVKTRSLKTGEELLGCDSIRAVFKGHFH 68 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL----QVDVPLIQALNKRGFEIAVE 117 RY+ D++ L+ + G ++ VLTGGEPL+ + + L++ L +E+ E Sbjct: 69 HKRYSTDEILSLV-DGLCKGLEQKPIIVLTGGEPLIWHQNENFINLVRNL-LINYEVHFE 126 Query: 118 TNGTI 122 TNGTI Sbjct: 127 TNGTI 131 >gi|152991808|ref|YP_001357529.1| hypothetical protein SUN_0212 [Sulfurovum sp. NBC37-1] gi|151423669|dbj|BAF71172.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 252 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 85/190 (44%), Gaps = 27/190 (14%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-----SGREQDRLSAQCRF-CDTDFVG 56 ++ + E F ++QGEG +AG + F R GCNL + E D + R+ CDT F Sbjct: 1 MFYLTEQFFSIQGEGKYAGVPSYFLRTGGCNLSCPGFGATYEVD---GEIRYGCDTYFAV 57 Query: 57 IQGTKGGRYNVDQ---LADLIEEQWITGEKEGRYCVLTGGEPLL----QVDVPLIQALNK 109 VD L D ++E++ T V+TGGEPL+ V ++ L Sbjct: 58 DSAYAKSWKKVDDSRILVDRLQEEF-TQIGYAPDVVITGGEPLMYHSDSVFYEVVSWLVD 116 Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGC----DLKIKGGQE--LKLVFPQVNVSPENY 163 RG I ETNGTIE ID+ C LK+ E K V PQ + ++Y Sbjct: 117 RGVRITFETNGTIE----IDFDAFPAYKACVFALSLKLANSGEPASKRVIPQALKNLQSY 172 Query: 164 IGFDFERFSL 173 F +F++ Sbjct: 173 SKETFLKFTI 182 >gi|119504267|ref|ZP_01626347.1| putative radical activating enzyme [marine gamma proteobacterium HTCC2080] gi|119459775|gb|EAW40870.1| putative radical activating enzyme [marine gamma proteobacterium HTCC2080] Length = 219 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 21/118 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G VF R +GC L +C +CDT++ GG+ Sbjct: 11 ITEIFHSLQGEARSVGLPTVFVRLTGCPL-----------RCVWCDTEY----AFSGGK- 54 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 + L ++++ I R CV TGGEPL Q + +PL++ L G+E+++ET+G + Sbjct: 55 -ILALTQILQQ--IKSFSCPRVCV-TGGEPLAQPESLPLLKQLCDEGYEVSLETSGAL 108 >gi|226952147|ref|ZP_03822611.1| radical activating enzyme [Acinetobacter sp. ATCC 27244] gi|294651041|ref|ZP_06728380.1| radical activating enzyme [Acinetobacter haemolyticus ATCC 19194] gi|226837109|gb|EEH69492.1| radical activating enzyme [Acinetobacter sp. ATCC 27244] gi|292823054|gb|EFF81918.1| radical activating enzyme [Acinetobacter haemolyticus ATCC 19194] Length = 238 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G VF R +GC L +C +CDT + +G G R Sbjct: 22 ITEIFYSLQGEANTFGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERL 67 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 +++ + + + + Y +TGGEPL Q + + L+Q L GF++++ET+G ++ Sbjct: 68 SLEHIIE------TASQYKTPYICVTGGEPLAQPNCLILLQRLCDLGFQVSLETSGALD 120 >gi|254482513|ref|ZP_05095752.1| radical SAM domain protein, putative [marine gamma proteobacterium HTCC2148] gi|214037204|gb|EEB77872.1| radical SAM domain protein, putative [marine gamma proteobacterium HTCC2148] Length = 222 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 21/118 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G VF R +GC L +C +CDT++ + G + Sbjct: 14 ITEIFYSLQGEARTVGVPTVFVRLTGCPL-----------RCVYCDTEYA---FSGGDLF 59 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 ++D + + + R+ +TGGEPL Q + + L+ L G+E+++ET+G + Sbjct: 60 SIDDVVSRV------AAYQPRFVTVTGGEPLAQPNCLLLLTRLCDAGYEVSLETSGAM 111 >gi|91200480|emb|CAJ73528.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 211 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF ++QGE G VF R +GCNL +C +CDT + +G Sbjct: 3 INEIFRSIQGETSFTGLPFVFVRLTGCNL-----------RCSYCDTQYAYDEG------ 45 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 N ++ +I++ G K CV TGGEPL + P L++ L R + + VETNG+ + Sbjct: 46 NEMPISSIIDKIDSFGLKS--VCV-TGGEPLSNHNTPVLVRELLNRNYTVLVETNGSYD 101 >gi|222824418|ref|YP_002575992.1| radical SAM domain protein [Campylobacter lari RM2100] gi|222539639|gb|ACM64740.1| radical SAM domain protein [Campylobacter lari RM2100] Length = 249 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 7/125 (5%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTKG 62 + E FL++QGEG ++G +A+F RF+GCN G ++++ S CDT Sbjct: 3 VVETFLSIQGEGKYSGNLAIFVRFAGCNFNCVGFGVKKEKDSKILLGCDTIRAVFTKEFK 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----VPLIQALNKRGFEIAVET 118 Y L +E V+TGGEPLL + I L + F + ET Sbjct: 63 TCYKTYTSVKLFDEVLKLANSRKAIVVITGGEPLLNYQNKDFLCFINLLLENDFMVHFET 122 Query: 119 NGTIE 123 N +IE Sbjct: 123 NASIE 127 >gi|188996510|ref|YP_001930761.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931577|gb|ACD66207.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 220 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 19/120 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + EIF +++GEG G VF R GCNL +C +CDT + G Sbjct: 13 FKVVEIFRSVEGEGRWVGLPVVFIRLEGCNL-----------RCSWCDTPY----SYTGE 57 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + ++D++EE I R C+ TGGEP ++ L+ L + +++ +ETNGT+ Sbjct: 58 NFKLLSISDILEE--IKKYNLKRVCI-TGGEPFFTENLDILVGNLIENNYQVFIETNGTL 114 >gi|45659043|ref|YP_003129.1| Fe-S oxidoreductase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602289|gb|AAS71766.1| Fe-S oxidoreductase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 243 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 101/239 (42%), Gaps = 50/239 (20%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 S+ EI+L+L GEG G +F R +GC+L G R +CDT + + G Sbjct: 13 SVHEIYLSLSGEGISTGIPTIFVRMAGCSLRCGMTVGR----KLWCDTPY-ALSPKAGEE 67 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--------LQVDVPLIQALNKRGF--EI 114 +V+Q+ D I+E + +LTGGEPL + + + + N GF Sbjct: 68 MSVNQVLDKIQELSAVNIQ----ILLTGGEPLEGRNREFSITLGNEIFRIRNSSGFYPRP 123 Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKG-GQELKLVFPQVNV-----SPENYIGF-- 166 VETNG E +G+D + D K+ G G E ++ + + +P + I F Sbjct: 124 RVETNGA-ESIEGMDQFVFT----LDYKLPGSGMEDRMNLKNLEIYKERKNPLDEIKFVI 178 Query: 167 ----DFER-------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 DFER P+ G E I Y + RLS+QTHK+I Sbjct: 179 RDKNDFERCLEIIEKHALVGNLLASPVQGELSPEILAEWIKYSLGS-GLRLSIQTHKYI 236 >gi|119715336|ref|YP_922301.1| radical SAM domain-containing protein [Nocardioides sp. JS614] gi|119535997|gb|ABL80614.1| Radical SAM domain protein [Nocardioides sp. JS614] Length = 246 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 83/180 (46%), Gaps = 44/180 (24%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF TLQGEG AG+ A F R CNL C +CDT + R Sbjct: 22 ISEIFGPTLQGEGPSAGKSAAFVRLGACNL-----------ACVWCDTSYT----WDSSR 66 Query: 65 YNVDQLADLIEEQWITGEKEGR-------YCVLTGGEPLLQV--DVPLIQALNKRGFEIA 115 Y D ++L+ + T E + V+TGGEP LQ L +A+ + G + Sbjct: 67 Y--DLASELVAKP--TAEVADKALSFGVPLVVITGGEPALQAVEAARLAEAVTRSGSAVE 122 Query: 116 VETNGTIEPPQG-----IDWICVSPKAGCDLKIKGGQ-ELKLVFP---QVNVSPENYIGF 166 +ET+G++ P G + I VSPK L GG+ + +L +P ++V P + + F Sbjct: 123 LETSGSL--PLGPLADAVRLIVVSPK----LANAGGRPQARLRWPVLEAISVLPHSVLKF 176 >gi|168704078|ref|ZP_02736355.1| radical activating enzyme [Gemmata obscuriglobus UQM 2246] Length = 242 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 57/120 (47%), Gaps = 27/120 (22%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EI+L++QGE AG VF R S C+ ++CR+CDT QGT+ R Sbjct: 33 VHEIYLSVQGESTFAGLPCVFVRTSVCD-----------SRCRWCDTPHAFTQGTRVPRA 81 Query: 66 NVDQLADLIEEQWITGEKEGRYCVL---TGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 V G+ C L TGGEPLLQ DV PL+ L G + +ET+G Sbjct: 82 EV------------LGKVLSFGCPLVEITGGEPLLQPDVLPLMSELCAAGKTVLLETSGA 129 >gi|16082343|ref|NP_394815.1| ATP binding cassette transporter, ExsD protein related [Thermoplasma acidophilum DSM 1728] gi|10640702|emb|CAC12480.1| ATP binding cassette transporter, ExsD protein related [Thermoplasma acidophilum] Length = 209 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF ++QGEG +AG +F R + CN+ +C +CDT + G Sbjct: 3 ITEIFHSIQGEGPYAGLPMLFVRTNVCNI-----------RCEWCDTKY---SFYGGKEI 48 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 + +L +++E KEG C TGGEPL+Q D + ++++ G + +ETNGTI Sbjct: 49 PLSELLGIVKEA-----KEGWVC-FTGGEPLVQRDALAFVKSVVDMGKNVLIETNGTIS 101 >gi|294828448|ref|NP_714217.2| organic radical activating enzyme [Leptospira interrogans serovar Lai str. 56601] gi|293386302|gb|AAN51235.2| organic radical activating enzyme [Leptospira interrogans serovar Lai str. 56601] Length = 237 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 100/239 (41%), Gaps = 50/239 (20%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 S+ EI+L+L GEG G +F R +GC+L G R +CDT + + G Sbjct: 7 SVHEIYLSLSGEGISTGIPTIFVRMAGCSLRCGMTVGR----KLWCDTPY-ALSPKAGEE 61 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--------LQVDVPLIQALNKRGF--EI 114 +V+Q+ D I+E + +LTGGEPL + + + + N GF Sbjct: 62 MSVNQVLDKIQELSAVNIQ----ILLTGGEPLEGRNREFSITLGNEIFRIRNSSGFYPRP 117 Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKG-GQELKLVFPQVNV-----SPENYIGF-- 166 VETNG E +G+D + D K+ G G E ++ + + +P + I F Sbjct: 118 RVETNGA-ESIEGMDQFVFT----LDYKLPGSGMEDRMNLKNLEIYKERKNPLDEIKFVI 172 Query: 167 ----DFER-------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 DFER P+ G E I Y RLS+QTHK+I Sbjct: 173 RDKNDFERCLEIIEKHALVGNLLASPVQGELSPEILAEWIKYSL-GSGLRLSIQTHKYI 230 >gi|222445352|ref|ZP_03607867.1| hypothetical protein METSMIALI_00980 [Methanobrevibacter smithii DSM 2375] gi|261350087|ref|ZP_05975504.1| coenzyme PQQ synthesis protein III [Methanobrevibacter smithii DSM 2374] gi|222434917|gb|EEE42082.1| hypothetical protein METSMIALI_00980 [Methanobrevibacter smithii DSM 2375] gi|288860873|gb|EFC93171.1| coenzyme PQQ synthesis protein III [Methanobrevibacter smithii DSM 2374] Length = 232 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 20/139 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR- 64 I EIF + QGEG G+ +F RF+GCNL C +CDT+ + K G+ Sbjct: 5 IIEIFSSFQGEGLFIGQRQIFVRFAGCNL-----------NCNYCDTN--DSKSEKSGKL 51 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 VD++ IE+ + TGGEP L + + + + +I +ETNGT+ Sbjct: 52 MTVDEVLAAIEK---VRTPDCHVISFTGGEPSLYPEF-INEVARQTDLKILLETNGTL-- 105 Query: 125 PQGIDWICVSPKAGCDLKI 143 P+ ID+I D+K+ Sbjct: 106 PEKIDFIEKLDIVSLDIKL 124 >gi|20092988|ref|NP_619063.1| hypothetical protein MA4197 [Methanosarcina acetivorans C2A] gi|19918305|gb|AAM07543.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 255 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 61/131 (46%), Gaps = 32/131 (24%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV--------- 55 SIKEIF ++QGEG + G F RFSGCNL C +CDT+F Sbjct: 10 SIKEIFCSVQGEGPYVGVRQAFVRFSGCNL-----------NCNYCDTNFENLGTCDYEI 58 Query: 56 ----GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111 GI NV++L L++ K+ LTGGEPLL D I+ L K Sbjct: 59 IEGNGIFEKIPNPINVEKLESLLQPF-----KKLHSVSLTGGEPLLHAD--FIEKL-KLP 110 Query: 112 FEIAVETNGTI 122 + +E+N T+ Sbjct: 111 VPLYLESNMTL 121 >gi|148244548|ref|YP_001219242.1| organic radical activating enzyme [Candidatus Vesicomyosocius okutanii HA] gi|146326375|dbj|BAF61518.1| organic radical activating enzyme [Candidatus Vesicomyosocius okutanii HA] Length = 213 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 21/119 (17%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +I EIF ++QGE G +VF R +GC L +C +CDT++ G Sbjct: 7 NINEIFYSIQGEAREVGLPSVFIRLTGCPL-----------KCTYCDTEY-AFHGN---- 50 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 N+ ++ +I E + + Y +TGGEPLLQ + L+ L + +++++ET+G+I Sbjct: 51 -NLMEIDAIISE---IKQYDTTYICVTGGEPLLQKNCYLLLDRLVENNYQVSLETSGSI 105 >gi|254468966|ref|ZP_05082372.1| radical SAM domain protein [beta proteobacterium KB13] gi|207087776|gb|EDZ65059.1| radical SAM domain protein [beta proteobacterium KB13] Length = 212 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 30/178 (16%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M I EIF ++QGE G+ VF R +GC + +C +CDT + +G Sbjct: 1 MSTLRINEIFYSIQGESSRIGKPTVFVRLTGCPM-----------RCTYCDTAYAFHEGQ 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119 + + Q + ++T +TGGEPL Q + + L+ L + G+++++ET Sbjct: 50 QQEIEEIIQEIKQFDTNYVT---------VTGGEPLAQKNCIDLMNQLCELGYQVSLETG 100 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF-PQV-NVSPENYIGF---DFERFS 172 G ++ I + K D+K E K F P + N+ + I F D+E FS Sbjct: 101 GALD----IKDVHAKVKIILDVKTPKSNEDKNNFWPNLENIRTNDEIKFVIQDYEDFS 154 >gi|223038702|ref|ZP_03608995.1| FO synthase subunit 2 2 [Campylobacter rectus RM3267] gi|222880104|gb|EEF15192.1| FO synthase subunit 2 2 [Campylobacter rectus RM3267] Length = 254 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 18/130 (13%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNL----WSGREQDRLSAQCRF-CDTDFVGIQGTKG 62 E FL++QGEG +GR+A+F RF+GCNL + R + + CDT ++ Sbjct: 7 ENFLSIQGEGASSGRLAIFLRFAGCNLNCAGFGVRAISPKTGETLVGCDT----VRAVFT 62 Query: 63 GRYNVDQLADLIEEQWITGE-----KEGRYCVLTGGEPLLQ----VDVPLIQALNKRGFE 113 G ++ +++ E IT ++ V+TGGEPLL + + + G+E Sbjct: 63 GHFSYQKISRADELAKITQNLSVNLRQKPILVITGGEPLLHHKNRILLDFLDFATSEGYE 122 Query: 114 IAVETNGTIE 123 ETNGTIE Sbjct: 123 PHFETNGTIE 132 >gi|189347255|ref|YP_001943784.1| Radical SAM domain protein [Chlorobium limicola DSM 245] gi|189341402|gb|ACD90805.1| Radical SAM domain protein [Chlorobium limicola DSM 245] Length = 220 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 21/117 (17%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 SI EIF ++QGE AG F R +GC CR+CDT + GT+ Sbjct: 4 SISEIFHSIQGESSFAGWPCAFVRLAGCG-----------HGCRYCDTTYAEKPGTEMET 52 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 + + D I Q + +TGGEPLLQ +V PL++ L R ++ +ET G Sbjct: 53 DEIFEKIDEIGAQLVE---------ITGGEPLLQKEVYPLMERLCDRKEKVLLETGG 100 >gi|262373096|ref|ZP_06066375.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Acinetobacter junii SH205] gi|262313121|gb|EEY94206.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Acinetobacter junii SH205] Length = 236 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G VF R +GC L +C +CDT + +G G R Sbjct: 20 ITEIFYSLQGEANTFGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERQ 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 +++ + + + + Y +TGGEPL Q + + L+Q L GF++++ET+G ++ Sbjct: 66 SLEHIIE------TASQFKTPYICVTGGEPLAQPNCLVLLQRLCDLGFDVSLETSGALD 118 >gi|293376550|ref|ZP_06622778.1| radical SAM domain protein [Turicibacter sanguinis PC909] gi|325839435|ref|ZP_08166874.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Turicibacter sp. HGF1] gi|292644776|gb|EFF62858.1| radical SAM domain protein [Turicibacter sanguinis PC909] gi|325490555|gb|EGC92871.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Turicibacter sp. HGF1] Length = 222 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 19/122 (15%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y + E F+++ GEG AG++A F RF CNL +C +CDT + +G Sbjct: 1 MYQVIEKFISIDGEGPCAGQLAAFIRFKNCNL-----------RCDWCDTCYSYDGSVEG 49 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL--NKRGFEIAVETNG 120 + ++ ++E + + LTGGEPL+Q + ++ + + I +ETNG Sbjct: 50 ENLSPLEIYHFVKENKVN------HVTLTGGEPLIQPQIEVLIGILAADKELTIHIETNG 103 Query: 121 TI 122 ++ Sbjct: 104 SV 105 >gi|157273449|gb|ABV27348.1| radical SAM domain protein [Candidatus Chloracidobacterium thermophilum] Length = 210 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 21/116 (18%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF ++QGE +AG F R +GC+L +C +CD+++ T G Sbjct: 3 ITEIFFSIQGESSYAGLPCAFVRTTGCDL-----------RCTWCDSEYT---FTGGTHM 48 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 +V+++ + + R LTGGEPLLQ D+ L + L + G+ + +ET G Sbjct: 49 SVEEILERVRAY------PTRLVELTGGEPLLQKDIYELSERLLEEGYTVLIETGG 98 >gi|90417119|ref|ZP_01225047.1| radical activating enzyme family protein [marine gamma proteobacterium HTCC2207] gi|90331135|gb|EAS46391.1| radical activating enzyme family protein [marine gamma proteobacterium HTCC2207] Length = 216 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 22/125 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G VF R +GC L +C +CDT + G+K Sbjct: 8 ITEIFHSLQGETSTVGLPTVFVRLTGCPL-----------RCGYCDTAYAFEGGSKW--- 53 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 L+D++ + +Y +TGGEPL Q + L++ L G+ +++ET+G + P Sbjct: 54 ---TLSDILS---TVADYGAKYVTVTGGEPLAQPQCIELLKQLCDLGYRVSLETSGAM-P 106 Query: 125 PQGID 129 + +D Sbjct: 107 VEDVD 111 >gi|312136463|ref|YP_004003800.1| radical sam domain protein [Methanothermus fervidus DSM 2088] gi|311224182|gb|ADP77038.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088] Length = 232 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 18/118 (15%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR- 64 + EIF ++QGEG G+ +F RF+GCNL C +CDT + K G+ Sbjct: 5 VYEIFSSIQGEGLLVGKRQIFVRFAGCNL-----------DCIYCDTP--KSRDPKNGKL 51 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++VD+L ++ +T + LTGGEPLL D + + L K F +ETNG++ Sbjct: 52 FSVDELYKSVKS-LVTPDLHS--ICLTGGEPLLYADF-IKKFLKKCEFNALLETNGSL 105 >gi|54294940|ref|YP_127355.1| hypothetical protein lpl2019 [Legionella pneumophila str. Lens] gi|53754772|emb|CAH16259.1| hypothetical protein lpl2019 [Legionella pneumophila str. Lens] Length = 217 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 21/117 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G + VF R +GC L +C++CDT + GG Sbjct: 10 ITEIFHSLQGESVTVGLLTVFVRLTGCPL-----------RCQYCDTAY----AFSGGE- 53 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 V ++ D++ + + ++ +TGGEPL Q +PL+ L G+ +++ET+G Sbjct: 54 -VVEIDDILNK---VASYQCQHVCVTGGEPLAQPGCIPLLSKLCDAGYSVSLETSGA 106 >gi|192361070|ref|YP_001983293.1| radical SAM domain-containing protein [Cellvibrio japonicus Ueda107] gi|190687235|gb|ACE84913.1| radical SAM domain protein [Cellvibrio japonicus Ueda107] Length = 252 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G VF R +GC L +C +CD+++ G R Sbjct: 44 ITEIFYSLQGEARTVGLPTVFVRLTGCPL-----------RCGYCDSEYAFYGGE---RL 89 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 ++D++ + R+ +TGGEP+ Q + V L++ L G+ +++ET+G + P Sbjct: 90 SLDEILARV------ARYHPRHVCVTGGEPMAQRECVTLLKMLCDAGYGVSLETSGAM-P 142 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 + +D P+ DLK G E+ Sbjct: 143 LEDVD-----PRVSKVMDLKTPGSGEV 164 >gi|313683431|ref|YP_004061169.1| radical sam domain protein [Sulfuricurvum kujiense DSM 16994] gi|313156291|gb|ADR34969.1| Radical SAM domain protein [Sulfuricurvum kujiense DSM 16994] Length = 252 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 65/129 (50%), Gaps = 15/129 (11%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNL----WSGREQDRLSAQCRFCDTDF-VGIQGTKG 62 E F ++QGEG + G ++F RF GCNL + RE ++ CDT + V +G Sbjct: 6 EHFYSVQGEGKYTGVPSLFFRFGGCNLKCEGFGCRESAPDGSEVLGCDTVYAVDRKGFGE 65 Query: 63 GRYNVDQLADLIEEQWI-TGEKEGRY--CVLTGGEPLLQVDVPL----IQALNKRGFEIA 115 +++L LI WI G + + VLTGGEPL+ + P+ I+ L G + Sbjct: 66 LWMEIEELQSLI---WIMNGYRLPPHVDVVLTGGEPLIYANEPIFVEFIEYLIAHGHRVT 122 Query: 116 VETNGTIEP 124 ETN TI P Sbjct: 123 FETNATIAP 131 >gi|206889913|ref|YP_002249329.1| radical activating enzyme [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741851|gb|ACI20908.1| radical activating enzyme [Thermodesulfovibrio yellowstonii DSM 11347] Length = 208 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 36/158 (22%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 EIF ++QGE AG VF R +GCNL +C +CDT + +G + ++ Sbjct: 5 EIFTSIQGESSLAGIPMVFVRLTGCNL-----------RCSYCDTKYAYYEGEE---LSI 50 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 +++ + I +Y +TGGEPLLQ + LI L K + +ETNG+I + Sbjct: 51 NKVLEKIHSFPF------QYVEITGGEPLLQDETYKLINELVK-SHNVLIETNGSIPIEK 103 Query: 127 GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYI 164 V+P+ + IK P +S +NYI Sbjct: 104 ------VNPEVKIIMDIKT--------PGSGMSEKNYI 127 >gi|78043751|ref|YP_359801.1| radical SAM domain-containing protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995866|gb|ABB14765.1| radical SAM domain protein [Carboxydothermus hydrogenoformans Z-2901] Length = 238 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 31/136 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + +I EIF +LQGEG +AG +F RFSGCNL C +CDT+ K Sbjct: 1 MANIVEIFPSLQGEGLYAGVSTLFIRFSGCNL-----------NCSYCDTEDAR---EKR 46 Query: 63 GRYNVDQ--------LADLIEEQWITGEKEGR------YCVLTGGEPLLQVDVPLIQALN 108 R+ V + L + E+ + +E LTGGEPLL L + L Sbjct: 47 ERFTVTKEDGSLLEFLNPVTPEKLVEILRENYDFTYFPQLALTGGEPLLHASF-LKEFLP 105 Query: 109 KRGF--EIAVETNGTI 122 K + E+ +ETNGT+ Sbjct: 106 KLSYPGEVLLETNGTL 121 >gi|148643115|ref|YP_001273628.1| coenzyme PQQ synthesis protein [Methanobrevibacter smithii ATCC 35061] gi|148552132|gb|ABQ87260.1| coenzyme PQQ synthesis protein, SAM family [Methanobrevibacter smithii ATCC 35061] Length = 232 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 20/139 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR- 64 I EIF + QGEG G+ +F RF+GCNL C +CDT+ + K G+ Sbjct: 5 IIEIFSSFQGEGLFIGQRQIFVRFAGCNL-----------NCSYCDTN--DSKSEKSGKL 51 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 VD + IE + TGGEP L + + + + +I +ETNGT+ Sbjct: 52 MTVDDVLAAIEN---VRTPDCHVISFTGGEPSLYPEF-INEVARQTDLKILLETNGTL-- 105 Query: 125 PQGIDWICVSPKAGCDLKI 143 P+ ID+I D+K+ Sbjct: 106 PEKIDFIEKLDIVSLDIKL 124 >gi|313673522|ref|YP_004051633.1| radical sam domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940278|gb|ADR19470.1| Radical SAM domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 237 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 66/147 (44%), Gaps = 27/147 (18%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-----VGIQGT 60 IKE+F ++QGEG + G + +F RFSGC S C+ CDTD+ GT Sbjct: 12 IKEVFTSIQGEGKYVGALQLFVRFSGC-----------SIGCKGCDTDYSFTDSFDFNGT 60 Query: 61 K--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAV 116 ++LA +I + +TGGEPLLQ D LI L G+ I + Sbjct: 61 SVLSNPIKPERLACIIYDHIKPNSIHS--ISITGGEPLLQKDFLKELIFYLKGYGYRIFL 118 Query: 117 ETNGTI-----EPPQGIDWICVSPKAG 138 ET+G E +D I + K G Sbjct: 119 ETSGFFIDRLNEVGDMVDIISLDFKLG 145 >gi|48478135|ref|YP_023841.1| 6-pyruvoyltetrahydropterin 2'-reductase [Picrophilus torridus DSM 9790] gi|48430783|gb|AAT43648.1| 6-pyruvoyltetrahydropterin 2'-reductase [Picrophilus torridus DSM 9790] Length = 249 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 19/133 (14%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 ++F ++QGEG +AG+ A F RF CNL+ G E+ D +++ + + Sbjct: 7 DLFYSIQGEGRYAGKPAFFIRFPECNLFCGLEKPLKPGN---YDQEYINNLKSVNAGWVC 63 Query: 68 DQLADLIEE----------QWITGEKEGRY-CVLTGGEPLLQVD--VPLIQALNKRGFE- 113 D +A + +I+ G Y V TGGEPL+ + +I A+N + + Sbjct: 64 DTMAQWLSNGFQIDINDIVDYISRLSSGSYNIVFTGGEPLINRSNILKIIDAVNSKNLKP 123 Query: 114 --IAVETNGTIEP 124 +ETNGT+EP Sbjct: 124 YIYEIETNGTMEP 136 >gi|189424905|ref|YP_001952082.1| radical SAM protein [Geobacter lovleyi SZ] gi|189421164|gb|ACD95562.1| Radical SAM domain protein [Geobacter lovleyi SZ] Length = 254 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 71/157 (45%), Gaps = 34/157 (21%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG----TKGG 63 EIF +LQGEG AG +F RF GCNL C FCDTDF T G Sbjct: 15 EIFSSLQGEGVLAGYRQIFVRFPGCNL-----------DCSFCDTDFEAQTACRVETTPG 63 Query: 64 RYNVDQLADLIEEQWITGEKEGRYC----------VLTGGEPLLQVDVPLIQALNKRG-- 111 +LA + + + G R+C +TGGEP+L D+ L + L + Sbjct: 64 SGQFQELAQPVSLETLLG-IITRWCKQLPNAHHSISITGGEPMLHADL-LARWLPELNIL 121 Query: 112 FEIAVETNGTIEP--PQGIDWICVSPKAGCDLKIKGG 146 I +ETNGT+ P+ I+ + V D+K+ G Sbjct: 122 LPIHLETNGTLPEALPRLIEHLDV---ISMDIKLPGS 155 >gi|283853629|ref|ZP_06370864.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B] gi|283570991|gb|EFC19016.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B] Length = 211 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 62/142 (43%), Gaps = 31/142 (21%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF ++QGE AG F R SGCNL C +CDT RY Sbjct: 5 VHEIFASIQGESSFAGWPCAFLRLSGCNL-----------DCVWCDT-----------RY 42 Query: 66 NVDQLADL-IEEQWITGEKEGRYCV-LTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ + E G V LTGGEPLL ++P L +AL G + VETNG+ Sbjct: 43 AAASFVEMTVPEAAAALLASGLPLVELTGGEPLLAPELPALARALLDAGATVLVETNGS- 101 Query: 123 EPPQGIDWICVSPKAGCDLKIK 144 D + P+A L IK Sbjct: 102 -----RDIAVLDPRAIAILDIK 118 >gi|251771685|gb|EES52260.1| Radical SAM family protein [Leptospirillum ferrodiazotrophum] Length = 213 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 21/131 (16%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I E F ++QGE AG F R +GC L +CR+CDT + +G + Sbjct: 1 MMRINETFFSIQGESTFAGWPCFFIRTTGCPL-----------RCRWCDTTYSFYEGEE- 48 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 L L++E +TGGEP ++P L++ L G + +ET+G Sbjct: 49 -----RTLDSLVDEAL---SHPAPLVEVTGGEPFSAPELPRLVEKLLDAGKTVLIETSGA 100 Query: 122 IEPPQGIDWIC 132 + PQG+D C Sbjct: 101 LPVPQGLDRRC 111 >gi|331007035|ref|ZP_08330269.1| Queuosine Biosynthesis QueE Radical SAM [gamma proteobacterium IMCC1989] gi|330419162|gb|EGG93594.1| Queuosine Biosynthesis QueE Radical SAM [gamma proteobacterium IMCC1989] Length = 218 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 26/139 (18%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF ++QGE G+ VF R +GC L +C +CD+++ G + Sbjct: 10 ITEIFFSIQGEAQTVGKPTVFVRLTGCPL-----------RCHYCDSEYAFYGGERMS-- 56 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT--- 121 L D++ + G Y +TGGEPL Q + L+ L + G ++++ET+G Sbjct: 57 ----LDDIMAKVMSYG---ATYVCVTGGEPLAQPEARTLLAQLCENGLQVSLETSGALAI 109 Query: 122 --IEPPQGIDWICVSPKAG 138 I+P + +P +G Sbjct: 110 DNIDPRVSVVMDVKTPSSG 128 >gi|54297969|ref|YP_124338.1| hypothetical protein lpp2024 [Legionella pneumophila str. Paris] gi|53751754|emb|CAH13176.1| hypothetical protein lpp2024 [Legionella pneumophila str. Paris] Length = 217 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 21/117 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G VF R +GC L +C++CDT + GG Sbjct: 10 ITEIFHSLQGESVTVGLPTVFVRLTGCPL-----------RCQYCDTAY----AFSGGE- 53 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 V ++ D++ + + ++ +TGGEPL Q VPL+ L G+ +++ET+G Sbjct: 54 -VVEIDDILNK---VASYQCQHVCVTGGEPLAQPGCVPLLSKLCDAGYSVSLETSGA 106 >gi|260892494|ref|YP_003238591.1| Radical SAM domain protein [Ammonifex degensii KC4] gi|260864635|gb|ACX51741.1| Radical SAM domain protein [Ammonifex degensii KC4] Length = 251 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 31/166 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + L ++EIF ++QGEG + G +F RF+GCNL CR+CDT I T Sbjct: 8 VALAPLREIFSSVQGEGPYVGVRHLFVRFAGCNL-----------TCRYCDTPR-DIPAT 55 Query: 61 -----KGGRYNVDQLAD--------LIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQ 105 GR + L + L+ + + G LTGGEPLL L+ Sbjct: 56 CRVEVVAGRQHFFHLPNPLTPEEVVLLVSNLLRQLRHG-AVALTGGEPLLYPAFLRELLP 114 Query: 106 ALNKRGFEIAVETNGTIEPPQGIDWIC-VSPKAGCDLKIKGGQELK 150 AL + G + +ETNGT+ P ++ + + DLK+ LK Sbjct: 115 ALRQIGCRVYLETNGTL--PYALEEVADLVDVVAMDLKLPSSTGLK 158 >gi|307823680|ref|ZP_07653908.1| Radical SAM domain protein [Methylobacter tundripaludum SV96] gi|307734974|gb|EFO05823.1| Radical SAM domain protein [Methylobacter tundripaludum SV96] Length = 213 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 23/125 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M I EIF +LQGE G VF R +GC L +C +CDT + G Sbjct: 1 MSSLRITEIFHSLQGESNTVGLPTVFIRLTGCPL-----------RCVYCDTAYAFTGGE 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118 K G I+ E+ G Y +TGGEPL Q + L+ L +G+ +++ET Sbjct: 50 KIG----------IDAIIAQAEQYGTPYITVTGGEPLAQPSCLELMTKLLDKGYVVSLET 99 Query: 119 NGTIE 123 +G ++ Sbjct: 100 SGALD 104 >gi|315638082|ref|ZP_07893267.1| radical SAM domain protein [Campylobacter upsaliensis JV21] gi|315481930|gb|EFU72549.1| radical SAM domain protein [Campylobacter upsaliensis JV21] Length = 247 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCN---LWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 E FL++QGEG AGR+AVF RF+ CN L G ++ + + CDT Sbjct: 5 ESFLSIQGEGKFAGRLAVFVRFANCNFNCLGFGVKKQKEGRELVGCDTLRAVFTKEYQNT 64 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----VPLIQALNKRGFEIAVETNG 120 Y +L + V+TGGEPLL + I+ L + FE+ ETN Sbjct: 65 YENLNAKELFLRVLKMAKDLKPIIVITGGEPLLHHKKSEFLKFIKLLLEAKFEVHFETNA 124 Query: 121 TI 122 +I Sbjct: 125 SI 126 >gi|13541127|ref|NP_110815.1| organic radical activating protein [Thermoplasma volcanium GSS1] gi|14324514|dbj|BAB59441.1| hypothetical protein [Thermoplasma volcanium GSS1] Length = 209 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 21/118 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF ++QGEG G +F R + CN+ +C +CDT + G + Sbjct: 3 ITEIFHSIQGEGTLIGIPMLFVRTNVCNI-----------RCEWCDTKYSFYGGREIALS 51 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 ++ + +EQW+ TGGEPL+Q D + ++ K G +I +ETNGT+ Sbjct: 52 DILNIVKEAKEQWVC---------FTGGEPLVQRDALSFVEGSLKLGKKILIETNGTV 100 >gi|325279462|ref|YP_004252004.1| Radical SAM domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324311271|gb|ADY31824.1| Radical SAM domain protein [Odoribacter splanchnicus DSM 20712] Length = 267 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 14/132 (10%) Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSG-REQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL 70 T+QGEG G ++F R +GCNL + D LS+ CD+ + Q + +V+ Sbjct: 33 TVQGEGKLCGIPSLFVRLAGCNLQCHWQTSDGLSSP---CDSAYAAYQLKDTRQVSVEA- 88 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQAL-NKRGFEIAVETNGTIEPPQ- 126 I + R+ VLTGGEPLLQV L Q L + F + +ETN T+ P+ Sbjct: 89 ---IYTTLLQNAGPIRHIVLTGGEPLLQVKELKALCQKLKSDYRFHLTLETNATLFDPEL 145 Query: 127 --GIDWICVSPK 136 ID +SPK Sbjct: 146 ARYIDLFSLSPK 157 >gi|94971669|ref|YP_593717.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis Ellin345] gi|94553719|gb|ABF43643.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis Ellin345] Length = 226 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 104/246 (42%), Gaps = 73/246 (29%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR- 64 I EI+ +LQGE + G +F R + CNL +C +CD+++ KGGR Sbjct: 3 ITEIYRSLQGESSYTGIPCIFVRLTACNL-----------RCAWCDSEYT----FKGGRK 47 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT- 121 + D++ +++ G E +TGGEPLLQ VP ++ L G+++ +ET+G Sbjct: 48 MSEDEIFAEVQKLAPGGLVE-----ITGGEPLLQERELVPFMERLVASGYKVLIETSGER 102 Query: 122 --IEPPQG----IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF------DFE 169 PQ +D C + G +I+ L +P + I F D+E Sbjct: 103 PLANVPQDVVKIVDVKCPASGEGGSFRIENLDAL---------TPHDEIKFVISDRADYE 153 Query: 170 RFSLQPMDGPFLEENTNLAI---------------SYCFQNPK----W--------RLSV 202 F+ + LE + I S+C +P+ W RL + Sbjct: 154 -FAREFTRQHGLENKVSSVIFSPAFRKDARGTRDASHCLVDPQDLANWVLEDQLDVRLGL 212 Query: 203 QTHKFI 208 QTHKFI Sbjct: 213 QTHKFI 218 >gi|297617391|ref|YP_003702550.1| radical SAM protein [Syntrophothermus lipocalidus DSM 12680] gi|297145228|gb|ADI01985.1| Radical SAM domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 243 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 28/136 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56 MK Y + EI ++QGEG AG +F RF GCNL +C +CDT VG Sbjct: 1 MKAY-LSEITESIQGEGTLAGSRQIFLRFCGCNL-----------RCPYCDT--VGSLSK 46 Query: 57 -----IQGTKGGRYNVDQLADLIEEQWI---TGEKEGRYCVLTGGEPLLQVDV--PLIQA 106 I G + + + A+ + + T + R+ LTGGEPLL D L Sbjct: 47 TPSCKIFLKPGSKNDFREYANPLSISDVVKATANFDTRWVSLTGGEPLLWADYLKRLAPI 106 Query: 107 LNKRGFEIAVETNGTI 122 L +G+ + +ETNGT+ Sbjct: 107 LVSKGYRMLLETNGTL 122 >gi|254497309|ref|ZP_05110117.1| hypothetical protein LDG_1789 [Legionella drancourtii LLAP12] gi|254353537|gb|EET12264.1| hypothetical protein LDG_1789 [Legionella drancourtii LLAP12] Length = 291 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 79/181 (43%), Gaps = 32/181 (17%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69 F TLQGEG + G A F R + CNL C FCDT F + V+ Sbjct: 27 FFTLQGEGPYRGHPAYFIRLAKCNL-----------ACSFCDTYFDSGEWRSFSSLLVEA 75 Query: 70 ---LADLIEEQ------WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA-VETN 119 +A+ +++ W G + V+TGGEP LQ +V A +R F+ +E+N Sbjct: 76 DVVIAEFFKQRNLPIPAWGQGVAKKIVLVITGGEPSLQNNVSAFLAEAQRYFQYTQIESN 135 Query: 120 GTIE----PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNV-SPENYIGFDFERFSLQ 174 GT PP + VSPK K G ++ + P V + + +Y+ F ++ Sbjct: 136 GTSVLSDLPPSTT--LVVSPKC----LEKNGAAVRYLEPNVKMLARADYLKFVMSAPEVE 189 Query: 175 P 175 P Sbjct: 190 P 190 >gi|15679238|ref|NP_276355.1| coenzyme PQQ synthesis protein III [Methanothermobacter thermautotrophicus str. Delta H] gi|2622338|gb|AAB85716.1| coenzyme PQQ synthesis protein III [Methanothermobacter thermautotrophicus str. Delta H] Length = 247 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 19/139 (13%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F ++QGEG GR +F RF+GCNL C +CDT + G + Sbjct: 8 IVEVFSSIQGEGLLVGRRQIFVRFAGCNL-----------NCSYCDTP-ESRDPSAGRLF 55 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 +L ++I E IT + +TGGEPLL D + + L + +ETNG++ P Sbjct: 56 TAPELTEII-EGLITPDFHS--ISITGGEPLLYPDF-ITELLEESPHRTLLETNGSL--P 109 Query: 126 QGIDWIC-VSPKAGCDLKI 143 + I + A D+KI Sbjct: 110 SNAERIAHLFDYASVDIKI 128 >gi|156974667|ref|YP_001445574.1| hypothetical protein VIBHAR_02385 [Vibrio harveyi ATCC BAA-1116] gi|156526261|gb|ABU71347.1| hypothetical protein VIBHAR_02385 [Vibrio harveyi ATCC BAA-1116] Length = 216 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 88/229 (38%), Gaps = 41/229 (17%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68 +F T+QGEG G AVF R C + C +CDT K R D Sbjct: 1 MFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWYAEEKDQRQIGD 49 Query: 69 QLADLIEE-QWITGEKE------------GRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115 L + W E ++ V+TGGEP + L A + + Sbjct: 50 ILVKTEDSPTWCFASAEDIVAEYKKQGFNAKHVVITGGEPCIYDLRALTAAFEEMDCQCQ 109 Query: 116 VETNGTIEPPQG-IDWICVSPKAGCDLKI-------KGGQELKL-VFPQVNVSPENYIGF 166 +ET+GT E W+ VSPK K+ + E+K V Q ++ + + Sbjct: 110 IETSGTSEVVTSESTWVTVSPKVAMKGKLPVLKSALERANEIKHPVGTQKDIDQLDVLLA 169 Query: 167 DFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E +LQP+ T L I C WRLSVQTHK++ I Sbjct: 170 SAEIGEKTVIALQPISQK--PRATQLCIDTCVAR-NWRLSVQTHKYLSI 215 >gi|239939759|ref|ZP_04691696.1| radical SAM family protein [Streptomyces roseosporus NRRL 15998] gi|239986242|ref|ZP_04706906.1| radical SAM family protein [Streptomyces roseosporus NRRL 11379] Length = 235 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 61/131 (46%), Gaps = 26/131 (19%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-GIQGTKGG 63 + EIF T+QGEG AGR VF R GCNL C +CDT + +GT Sbjct: 5 VNEIFGPTVQGEGPSAGRQCVFLRLGGCNL-----------SCHWCDTPYTWDWKGTSDE 53 Query: 64 RYNVDQLADL--------IEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFE 113 + D +L +EE G V++GGEPL Q P+++ L + G Sbjct: 54 KTAFDPRKELHNRDAGEVVEELLALGTG---LVVISGGEPLSQQRRLRPVLKGLLEAGVT 110 Query: 114 IAVETNGTIEP 124 + ETNGT+ P Sbjct: 111 VEFETNGTVVP 121 >gi|195953034|ref|YP_002121324.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932646|gb|ACG57346.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 212 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 97/235 (41%), Gaps = 53/235 (22%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD----TDFVGIQGTK 61 I E+F ++QGEG G A+F RF GCNL +C +CD DF + TK Sbjct: 2 INEVFYSIQGEGFLIGTPALFVRFQGCNL-----------RCVWCDEKNALDFD--KTTK 48 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 ++++ D I VLTGGEPLL D + + I +ETN Sbjct: 49 SYTKAIEEIED------ILAAHNPSLIVLTGGEPLLNEDFINIFSYFKSLDKTIQIETNA 102 Query: 121 TIEPPQ--------GIDWICVSPKAGCD-------LKIKGGQELKLVFPQ-VN--VSPEN 162 TI +I +SPK + L ELK+V + +N + Sbjct: 103 TILKDDIETLFKTYARTYITLSPKYISNYIIHPKFLAFDKNIELKIVVDEHLNEGILERE 162 Query: 163 YIGFDFER--FSLQPM----DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 Y+ E+ LQP+ + FL++ LA + R+ Q HK +G++ Sbjct: 163 YMKPFIEKGLLILQPLWENGNVKFLDKAIKLAEKF-----NTRIIPQMHKLLGLK 212 >gi|291443188|ref|ZP_06582578.1| radical SAM domain-containing protein [Streptomyces roseosporus NRRL 15998] gi|291346135|gb|EFE73039.1| radical SAM domain-containing protein [Streptomyces roseosporus NRRL 15998] Length = 241 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 61/131 (46%), Gaps = 26/131 (19%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-GIQGTKGG 63 + EIF T+QGEG AGR VF R GCNL C +CDT + +GT Sbjct: 11 VNEIFGPTVQGEGPSAGRQCVFLRLGGCNL-----------SCHWCDTPYTWDWKGTSDE 59 Query: 64 RYNVDQLADL--------IEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFE 113 + D +L +EE G V++GGEPL Q P+++ L + G Sbjct: 60 KTAFDPRKELHNRDAGEVVEELLALGTG---LVVISGGEPLSQQRRLRPVLKGLLEAGVT 116 Query: 114 IAVETNGTIEP 124 + ETNGT+ P Sbjct: 117 VEFETNGTVVP 127 >gi|148359615|ref|YP_001250822.1| radical activating enzyme [Legionella pneumophila str. Corby] gi|296107657|ref|YP_003619358.1| Organic radical activating enzyme [Legionella pneumophila 2300/99 Alcoy] gi|148281388|gb|ABQ55476.1| radical activating enzyme [Legionella pneumophila str. Corby] gi|295649559|gb|ADG25406.1| Organic radical activating enzyme [Legionella pneumophila 2300/99 Alcoy] Length = 217 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 21/117 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G VF R +GC L +C++CDT + GG Sbjct: 10 ITEIFHSLQGESVTVGLPTVFVRLTGCPL-----------RCQYCDTAY----AFSGGE- 53 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 V ++ D++ + + ++ +TGGEPL Q +PL+ L G+ +++ET+G Sbjct: 54 -VVEIDDILNK---VASYQCQHVCVTGGEPLAQPGCIPLLSKLCDAGYSVSLETSGA 106 >gi|307610772|emb|CBX00384.1| hypothetical protein LPW_21051 [Legionella pneumophila 130b] Length = 217 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 21/117 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G VF R +GC L +C++CDT + GG Sbjct: 10 ITEIFHSLQGESVTVGLPTVFVRLTGCPL-----------RCQYCDTAY----AFSGGE- 53 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 V ++ D++ + + ++ +TGGEPL Q +PL+ L G+ +++ET+G Sbjct: 54 -VVEIDDILNK---VASYQCQHVCVTGGEPLAQPGCIPLLSKLCDAGYSVSLETSGA 106 >gi|163800817|ref|ZP_02194717.1| aconitate hydratase [Vibrio sp. AND4] gi|159175166|gb|EDP59963.1| aconitate hydratase [Vibrio sp. AND4] Length = 216 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 94/233 (40%), Gaps = 49/233 (21%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68 +F T+QGEG G AVF R C + C +CDT Q + Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQECPV-----------GCSWCDTK----QTWYAKEEDQR 45 Query: 69 QLADLI-----EEQW---------ITGEKEG---RYCVLTGGEPLLQVDVPLIQALNKRG 111 Q+ D++ W + +K+G ++ V+TGGEP + L A + Sbjct: 46 QIGDILVKTEDSPTWCFASAQDIVVEYKKQGFNAKHIVITGGEPCIYDLRELTAAFEEMD 105 Query: 112 FEIAVETNGTIEP-PQGIDWICVSPKAGCD-----LKIKGGQELKLVFP--------QVN 157 + +ET+GT E W+ VSPK LK G+ ++ P Q++ Sbjct: 106 CQCQIETSGTSEVVASESTWVTVSPKVAMKGKLPILKSALGRANEIKHPVGTQKDIDQLD 165 Query: 158 VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 V + + +LQP+ T L I C WRLSVQTHK++ I Sbjct: 166 VLLASAEVGESTVIALQPISQK--PRATQLCIDTCIAR-NWRLSVQTHKYLSI 215 >gi|262379425|ref|ZP_06072581.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Acinetobacter radioresistens SH164] gi|262298882|gb|EEY86795.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Acinetobacter radioresistens SH164] Length = 236 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 23/120 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C +CDT + G + Sbjct: 20 ITEIFYSLQGEANAAGLPTVFIRLTGCPL-----------RCTYCDTTYSFEGGVRQS-- 66 Query: 66 NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 +EE T Y +TGGEPL Q + + L+Q L G ++++ET+G ++ Sbjct: 67 --------LEEIIATARSYNTPYICVTGGEPLAQPNCLVLLQRLCDLGHKVSLETSGALD 118 >gi|255320799|ref|ZP_05361974.1| organic radical activating enzyme [Acinetobacter radioresistens SK82] gi|255302176|gb|EET81418.1| organic radical activating enzyme [Acinetobacter radioresistens SK82] Length = 236 Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 23/120 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C +CDT + G + Sbjct: 20 ITEIFYSLQGEANAAGLPTVFIRLTGCPL-----------RCTYCDTTYSFEGGVRQS-- 66 Query: 66 NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 +EE T Y +TGGEPL Q + + L+Q L G ++++ET+G ++ Sbjct: 67 --------LEEIIATARSYNTPYICVTGGEPLAQPNCLVLLQRLCDLGHKVSLETSGALD 118 >gi|21226857|ref|NP_632779.1| hypothetical protein MM_0755 [Methanosarcina mazei Go1] gi|20905160|gb|AAM30451.1| conserved protein [Methanosarcina mazei Go1] Length = 255 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 32/131 (24%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF---------- 54 +++E+F ++QGEG + G F RFSGCNL C +CDT+F Sbjct: 10 NLREVFCSVQGEGPYVGMRQAFVRFSGCNL-----------SCNYCDTNFRNPGTYDYER 58 Query: 55 ---VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111 G+ N+++L E + K+ LTGGEPLL D I+ LN Sbjct: 59 VEGSGVFEKVSNPVNIEKL-----ESMLQPFKDLHSVSLTGGEPLLHAD--FIEKLNL-S 110 Query: 112 FEIAVETNGTI 122 + +E+N T+ Sbjct: 111 VPLYLESNMTL 121 >gi|313894807|ref|ZP_07828367.1| radical SAM domain protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312976488|gb|EFR41943.1| radical SAM domain protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 243 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 32/157 (20%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-VGIQGT--- 60 +I EIF ++QGEG + G VF R GCNL C +CDT+ +G T Sbjct: 4 NIIEIFSSIQGEGKYVGCRQVFVRLEGCNL-----------DCTYCDTEKEIGRHPTCVV 52 Query: 61 --KGGRY---------NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 G + +++ +A L + + G +TGGEPLL VP I+AL+ Sbjct: 53 EMPAGSHELHSYENPLSIETVAALAAQ--VAGGVPHHSLSVTGGEPLLH--VPFIRALSA 108 Query: 110 R-GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 R I +ETNGT+ CVS D+K+ G Sbjct: 109 RIPLPIFLETNGTLYEALAHCIDCVS-YISMDIKLPG 144 >gi|323488449|ref|ZP_08093696.1| hypothetical protein GPDM_03875 [Planococcus donghaensis MPA1U2] gi|323397956|gb|EGA90755.1| hypothetical protein GPDM_03875 [Planococcus donghaensis MPA1U2] Length = 235 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 18/135 (13%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G+ +F R +GC+ C +CD+ F GT G Sbjct: 5 VMEIFGPTVQGEGMVMGQKTMFVRTAGCDY-----------SCSWCDSKFTW-DGT--GT 50 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI- 122 Q AD+IEE G + ++GG P L + L+ +++G+++AVET +I Sbjct: 51 SVSKQPADIIEELIHIGGSNFSHVTISGGNPALHKGIGELVDLCHQQGWKVAVETQASIW 110 Query: 123 -EPPQGIDWICVSPK 136 E ID I +SPK Sbjct: 111 QEWMPTIDDITLSPK 125 >gi|73667685|ref|YP_303700.1| hypothetical protein Mbar_A0135 [Methanosarcina barkeri str. Fusaro] gi|72394847|gb|AAZ69120.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 258 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 32/130 (24%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I+E+F ++QGEG + G F RFSGCNL C +CDTDF + G Sbjct: 11 IREVFCSVQGEGPYVGARQAFVRFSGCNL-----------NCNYCDTDF-----SNPGTC 54 Query: 66 NVDQL--ADLIE-----------EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF 112 N +Q+ + + E E I + LTGGEPL+ D I+ LN Sbjct: 55 NYEQVEGSGIFEKIKNPVSISQLESMIRPFNKLHSVSLTGGEPLMHAD--FIEKLNLTS- 111 Query: 113 EIAVETNGTI 122 + +E+N T+ Sbjct: 112 PLYLESNMTL 121 >gi|93005554|ref|YP_579991.1| radical SAM family protein [Psychrobacter cryohalolentis K5] gi|92393232|gb|ABE74507.1| Radical SAM [Psychrobacter cryohalolentis K5] Length = 244 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 21/118 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +LQGE ++G +F R +GC L +C +CDT++ + G R Sbjct: 22 LTEIFYSLQGEALNSGLPTIFVRLTGCPL-----------RCVYCDTEYA---FSGGERQ 67 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +++ + I R C LTGGEPL Q + + L++ L G+EI++ET G + Sbjct: 68 SLETIMAT-----IASFPCKRIC-LTGGEPLAQPNAIELMKRLLNEGYEISLETAGAL 119 >gi|310639673|ref|YP_003944431.1| coenzyme pqq synthesis-like protein [Paenibacillus polymyxa SC2] gi|309244623|gb|ADO54190.1| Coenzyme PQQ synthesis-like protein [Paenibacillus polymyxa SC2] Length = 237 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 16/152 (10%) Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71 T+QGEG G +F R GC+ +C +CD+ F +K + L Sbjct: 13 TIQGEGSVIGLKTMFVRLYGCD-----------YKCSWCDSAFTWDGSSKSSIQRLTSL- 60 Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP--QG 127 ++I++ G Y ++GG P L + LI L+KR +I VET G+I Sbjct: 61 EIIDKLNSIGLDGCTYVTISGGNPALYNEPLYDLISELHKRSKKIIVETQGSIWKDWFND 120 Query: 128 IDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159 +D + +SPK L + L+ +F + S Sbjct: 121 VDILTISPKPPSSLMTTDWKVLRFIFANLQHS 152 >gi|87200860|ref|YP_498117.1| radical SAM family protein [Novosphingobium aromaticivorans DSM 12444] gi|87136541|gb|ABD27283.1| Radical SAM [Novosphingobium aromaticivorans DSM 12444] Length = 247 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 30/147 (20%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 E+F +LQGEG GR +VF R S CNL CR+CDT + + R + Sbjct: 13 EVFSSLQGEGPGMGRPSVFVRLSRCNL-----------ACRWCDTAYT-WRFAGDNRPHR 60 Query: 68 DQLA-DLIEEQWITGEKEGRYCVL---------TGGEPLLQ----VDVPLIQALNKRGFE 113 D++A + Q + E++ +L TGGEPLLQ + + + Sbjct: 61 DEVAFEKAGNQLVMSEEDTAALILVHPEDRLVITGGEPLLQGAALARLVALLKAERPALH 120 Query: 114 IAVETNGTIEPPQGIDWIC----VSPK 136 + +ETNGT+ +D + VSPK Sbjct: 121 VEIETNGTVAVHPALDPLVDQFNVSPK 147 >gi|57505796|ref|ZP_00371721.1| radical SAM domain protein protein [Campylobacter upsaliensis RM3195] gi|57015826|gb|EAL52615.1| radical SAM domain protein protein [Campylobacter upsaliensis RM3195] Length = 247 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCN---LWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 E FL++QGEG AG +A+F RF+GCN L G ++ + + CDT Sbjct: 5 ESFLSIQGEGKFAGLLAIFVRFAGCNFNCLGFGVKKQKEGRELVGCDTLRAVFTKEYQNT 64 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----VPLIQALNKRGFEIAVETNG 120 Y +L + V+TGGEPLL + I+ L + FE+ ETN Sbjct: 65 YENLNAKELFLRVLKMAKDLKPIIVITGGEPLLHHKKSEFLKFIKLLLEAKFEVHFETNA 124 Query: 121 TI 122 +I Sbjct: 125 SI 126 >gi|189500807|ref|YP_001960277.1| Radical SAM domain-containing protein [Chlorobium phaeobacteroides BS1] gi|189496248|gb|ACE04796.1| Radical SAM domain protein [Chlorobium phaeobacteroides BS1] Length = 223 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 22/117 (18%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGR 64 I EIF ++QGE AG F R SGC+ + CR+CDT + ++ GT Sbjct: 7 INEIFRSIQGESTFAGTPCTFIRLSGCD-----------SACRWCDTRYASVENGTAMTL 55 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 +++ AD + +TGGEPL Q V L+Q L +G + +ET G Sbjct: 56 SEIERRADGFRTSLVE---------ITGGEPLQQEPVYALMQQLCDKGHTVLLETGG 103 >gi|85373083|ref|YP_457145.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter litoralis HTCC2594] gi|84786166|gb|ABC62348.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter litoralis HTCC2594] Length = 245 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 62/146 (42%), Gaps = 32/146 (21%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-GIQGT------ 60 EIF ++QGEG AG F R S CNL C +CDT + +G Sbjct: 15 EIFASVQGEGLSAGAPVAFVRLSRCNL-----------ACVWCDTAYTWHFEGDTRPHRS 63 Query: 61 ------KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114 K + ++D AD+ E G+K V+TGGEPL+Q + Sbjct: 64 GETFERKANQVSLDP-ADVAERIAALGQKR---LVITGGEPLMQGGPLAELLELLPDMTV 119 Query: 115 AVETNGTIEPPQ----GIDWICVSPK 136 +ETNGT + P ID VSPK Sbjct: 120 EIETNGTTKAPPRLDIRIDQYNVSPK 145 >gi|288931807|ref|YP_003435867.1| radical SAM protein [Ferroglobus placidus DSM 10642] gi|288894055|gb|ADC65592.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642] Length = 224 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 65/246 (26%), Positives = 98/246 (39%), Gaps = 64/246 (26%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF ++QGEG G +F RF GCNL C +CDT + Sbjct: 4 KISEIFYSIQGEGIFCGVRQLFIRFYGCNL-----------NCYYCDTTY----NEDCVN 48 Query: 65 YNVDQL----ADLIEEQWITGEKEGRYCV-LTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 Y +++ +L Q I E E + V TGGEPLL D I +L K + +E+N Sbjct: 49 YAYNEVRKNPVELDYVQRIIDESERIHSVSFTGGEPLLYAD--FIASLKKTK-KFYLESN 105 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQE--------------------LKLVFPQVNVS 159 T+ P+ + DLK++ E ++ F ++ + Sbjct: 106 MTL--PEKAKKVRFFDVVAGDLKVREAVENYDEVFERTVKCYKILRDTRKRVTFCKIVLP 163 Query: 160 PENYIGFDFER--------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205 P+ F+FE F LQP+ G F E L + + R+ Q H Sbjct: 164 PK----FNFEEVLNSAMEIKDYVRCFVLQPVFGTFGENILKLQEA-ILEFSDARIIPQVH 218 Query: 206 KFIGIR 211 K++G+R Sbjct: 219 KYLGVR 224 >gi|118594347|ref|ZP_01551694.1| Radical SAM [Methylophilales bacterium HTCC2181] gi|118440125|gb|EAV46752.1| Radical SAM [Methylophilales bacterium HTCC2181] Length = 216 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 25/144 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G +F R +GC + +C +CDT + +G Sbjct: 9 INEIFYSLQGESSRIGLPTIFIRLTGCPM-----------RCNYCDTAYA---FHEGKNL 54 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 ++D + + I++ + + +TGGEPL Q + L+ L G+ +++ET G + Sbjct: 55 SIDAIIEEIKQY------DTNFITVTGGEPLAQRNCYSLLDQLCSLGYNVSLETGGAL-- 106 Query: 125 PQGIDWICVSPKAGCDLKIKGGQE 148 I+ + + K D+K G E Sbjct: 107 --SINEVHENVKIILDIKTPGSGE 128 >gi|193213357|ref|YP_001999310.1| radical SAM domain-containing protein [Chlorobaculum parvum NCIB 8327] gi|193086834|gb|ACF12110.1| Radical SAM domain protein [Chlorobaculum parvum NCIB 8327] Length = 219 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 21/117 (17%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 SI EIF ++QGE AG F R +GC C +CDT + GT Sbjct: 7 SISEIFHSIQGESSFAGWPCAFVRLAGCG-----------HGCNYCDTTYAEEAGTAMTI 55 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 V + A + + +TGGEPLLQ +V PL+ AL +G ++ +ET G Sbjct: 56 DEVVRRALTFDAPIVE---------VTGGEPLLQPEVYPLLSALCDKGAKVLLETGG 103 >gi|71065297|ref|YP_264024.1| radical activating enzyme [Psychrobacter arcticus 273-4] gi|71038282|gb|AAZ18590.1| probable radical activating enzyme [Psychrobacter arcticus 273-4] Length = 244 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 21/118 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +LQGE +G +F R +GC L +C +CDT++ + G R Sbjct: 22 LTEIFYSLQGEALTSGLPTIFVRLTGCPL-----------RCVYCDTEYA---FSGGERQ 67 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +++ + I R C LTGGEPL Q + + L++ L G+EI++ET G + Sbjct: 68 SLETMMAT-----IASFPCKRIC-LTGGEPLAQPNAIELMKRLLNDGYEISLETAGAL 119 >gi|329940403|ref|ZP_08289684.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptomyces griseoaurantiacus M045] gi|329300464|gb|EGG44361.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptomyces griseoaurantiacus M045] Length = 247 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 63/151 (41%), Gaps = 26/151 (17%) Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-- 69 T QGEG G A+F R S CNL C CDT + R++ + Sbjct: 31 TFQGEGPSCGHPALFIRLSRCNL-----------TCTRCDTKYTW----DWSRFDPHEES 75 Query: 70 ----LADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123 +A L+ W T V+TGGEPL+Q VPLI+ L G I ETNGTI Sbjct: 76 TRQSVAGLV--AWATSSPV-ELVVITGGEPLIQQARLVPLIRGLIAVGKRIEFETNGTIA 132 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154 P + V L G +E K + P Sbjct: 133 PTPELAADGVRFNVSPKLASFGVKETKSIVP 163 >gi|302392164|ref|YP_003827984.1| radical SAM domain protein [Acetohalobium arabaticum DSM 5501] gi|302204241|gb|ADL12919.1| Radical SAM domain protein [Acetohalobium arabaticum DSM 5501] Length = 240 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 28/122 (22%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF ++ GEG AG + F R +GCNL +C +CDT + Y Sbjct: 10 VVEIFNSISGEGISAGEIVTFVRVAGCNL-----------RCDYCDTMY---------SY 49 Query: 66 NVDQLADLIEEQWITGEKEG---RYCVLTGGEPLLQVDVP---LIQALNKRGFEIAVETN 119 D+ +L+ Q I + + TGGEP L+ D P L L K+GFE+ +ETN Sbjct: 50 Q-DEEYELLTPQQIVNRINNFGTQQVICTGGEP-LEEDKPKRYLPLYLAKQGFEVRIETN 107 Query: 120 GT 121 G+ Sbjct: 108 GS 109 >gi|20094254|ref|NP_614101.1| organic-radical-activating enzyme [Methanopyrus kandleri AV19] gi|19887288|gb|AAM02031.1| Organic-radical-activating enzyme [Methanopyrus kandleri AV19] Length = 252 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 15/128 (11%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTDFVGI 57 ++ E+FL+LQGEG G F RFSGCNL + R R + R + + Sbjct: 14 NVYEVFLSLQGEGKFVGEPQAFVRFSGCNLRCAYCDEPASRSSRRRALIRRVSGEVELEL 73 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ---VDVPLIQALNKRGFEI 114 G V+ L +L + + G LTGGEPL+Q LI+ L +RGF + Sbjct: 74 PVPCGPEDVVEVLVELEDLEDTFG-----TVSLTGGEPLVQPWGALKELIERLRERGFRV 128 Query: 115 AVETNGTI 122 +ETN ++ Sbjct: 129 LLETNASL 136 >gi|261855156|ref|YP_003262439.1| radical SAM protein [Halothiobacillus neapolitanus c2] gi|261835625|gb|ACX95392.1| Radical SAM domain protein [Halothiobacillus neapolitanus c2] Length = 227 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 22/125 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C +CDT + T G R Sbjct: 20 ITEIFRSLQGESESAGWPTVFVRLTGCPL-----------RCVYCDTAYA---FTGGERL 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEP 124 ++ + D + CV TGGEPL Q +PL+ +L G +++ET+G + Sbjct: 66 SLLSILD-----QVAAYHTQDVCV-TGGEPLAQPACLPLLTSLCDAGHLVSLETSGALS- 118 Query: 125 PQGID 129 +G+D Sbjct: 119 IEGVD 123 >gi|325981315|ref|YP_004293717.1| Radical SAM domain-containing protein [Nitrosomonas sp. AL212] gi|325530834|gb|ADZ25555.1| Radical SAM domain protein [Nitrosomonas sp. AL212] Length = 219 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 21/122 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +LQGE G VF R +GC L +C +CDT + T G Sbjct: 12 VNEIFFSLQGETSRVGLPTVFVRLTGCPL-----------RCGYCDTAYA---FTGGENI 57 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEP 124 ++ ++ + I + Y +TGGEPL Q + L+ AL + +++ET+G ++ Sbjct: 58 SIAEILNRI------AHYKTNYITVTGGEPLAQKACLVLLTALCDAKYSVSLETSGALDL 111 Query: 125 PQ 126 Q Sbjct: 112 SQ 113 >gi|307721837|ref|YP_003892977.1| hypothetical protein Saut_1922 [Sulfurimonas autotrophica DSM 16294] gi|306979930|gb|ADN09965.1| conserved hypothetical protein [Sulfurimonas autotrophica DSM 16294] Length = 252 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 9/124 (7%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNL----WSGREQDRLSAQCRFCDTDF-VGIQGTKG 62 E F ++QGEG + G ++F RF GCN+ + +E A+ CDT + V + Sbjct: 6 EHFYSIQGEGKYVGTPSLFFRFGGCNMKCEGFGCKETASDGAEVLGCDTVYAVNKEHFLQ 65 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL----QVDVPLIQALNKRGFEIAVET 118 +++ +L+ + E VLTGGEPL+ ++ V ++ L ++G +I ET Sbjct: 66 NWIPINKAQELLSILSLYDLPEAVDIVLTGGEPLIYANDEIFVDFLEVLVEQGHQITFET 125 Query: 119 NGTI 122 NG++ Sbjct: 126 NGSL 129 >gi|260887262|ref|ZP_05898525.1| radical SAM domain protein [Selenomonas sputigena ATCC 35185] gi|330838981|ref|YP_004413561.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185] gi|260863324|gb|EEX77824.1| radical SAM domain protein [Selenomonas sputigena ATCC 35185] gi|329746745|gb|AEC00102.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185] Length = 241 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 29/132 (21%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-----VGIQG 59 +I EIF ++QGEG + G VF RF+GCN+ +C FCDT F ++ Sbjct: 4 NILEIFSSIQGEGKYIGARQVFLRFAGCNI-----------KCSFCDTAFQPAASCRVEA 52 Query: 60 TKG-GRYNVDQLADLIEEQWITGEKEG-------RYCVLTGGEPLLQVDVPLIQAL-NKR 110 G G Y ++L + + Q + LTGGEPLL I+AL ++ Sbjct: 53 IPGCGEY--EELPNPLSVQEVAARIRAFVVPVRHHSISLTGGEPLLHAT--FIRALASEV 108 Query: 111 GFEIAVETNGTI 122 +ETNGT+ Sbjct: 109 NVPFFLETNGTL 120 >gi|315452915|ref|YP_004073185.1| Radical SAM domain protein [Helicobacter felis ATCC 49179] gi|315131967|emb|CBY82595.1| Radical SAM domain protein [Helicobacter felis ATCC 49179] Length = 242 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 62/140 (44%), Gaps = 13/140 (9%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTKGGR 64 E F +LQGEG G+ A+F R GCN G + D + CD+ + K Sbjct: 7 ESFYSLQGEGSCVGQPAIFIRLGGCNFKCTGFGVQSDIEGKKVLGCDSAYAIYPNAKWQY 66 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNG 120 N Q +L+++ VLTGGEP L P ++ L KRG I VE+NG Sbjct: 67 LNSTQ--ELLDKLPPFNSNRPPLIVLTGGEPSLHFKNPILLEALEILLKRGHGIWVESNG 124 Query: 121 TI----EPPQGIDWICVSPK 136 ++ PP +SPK Sbjct: 125 SVFFDFNPPLDSLHFTLSPK 144 >gi|29566198|ref|NP_817766.1| gp5 [Mycobacterium phage Rosebush] gi|109521763|ref|YP_655685.1| gp5 [Mycobacterium phage Qyrzula] gi|29424923|gb|AAN01847.1| gp5 [Mycobacterium phage Rosebush] gi|91980707|gb|ABE67425.1| gp5 [Mycobacterium phage Qyrzula] Length = 237 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 68/159 (42%), Gaps = 29/159 (18%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + E+F TLQGEG +AG F R GCNL C +CDT + T R Sbjct: 10 VSELFGPTLQGEGPYAGVTVQFLRLMGCNL-----------SCSWCDTPY-----TWDAR 53 Query: 65 YNVDQLADLIEEQW---ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVE 117 + D A+ W + V++GGEPLL QA+ ++G E+ +E Sbjct: 54 EH-DLNAETTLLAWPDIVDALLPDTPLVISGGEPLLHQKHSAFQAVLQHAWRKGCEVHIE 112 Query: 118 TNGTIEP----PQGIDWICVSPKAGCDLKIKGGQELKLV 152 TNGT+ P G VSPK +G Q+ + Sbjct: 113 TNGTLAPLAATVSGTTVFAVSPKLSHAGPHRGRQDAAIA 151 >gi|328885752|emb|CCA58991.1| Queuosine Biosynthesis QueE Radical SAM [Streptomyces venezuelae ATCC 10712] Length = 238 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 61/136 (44%), Gaps = 28/136 (20%) Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT----DFVGIQGTKGGRY-N 66 T+QGEG G A F R + CNL C CDT D K Y N Sbjct: 20 TVQGEGPSTGVPACFIRLALCNLI-----------CSPCDTPYTWDTTRFDLRKEAHYEN 68 Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124 V++L W + E V+TGGEPL+Q+ L++ L G + +ETNGTI P Sbjct: 69 VEELL-----AWALDQPED-LVVVTGGEPLIQMAGLTELVKGLRAAGRTVEIETNGTIAP 122 Query: 125 PQGI----DWICVSPK 136 + + + VSPK Sbjct: 123 SEALVAAGPYFNVSPK 138 >gi|254412243|ref|ZP_05026018.1| radical SAM domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181209|gb|EDX76198.1| radical SAM domain protein [Microcoleus chthonoplastes PCC 7420] Length = 269 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 36/158 (22%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-------DFVGIQGT 60 E+F +QGEG + G +F R + C+L +C FCD+ + ++ T Sbjct: 22 ELFSAIQGEGRNVGTRQLFIRLALCDL-----------RCHFCDSQNTWAVPNLASVEQT 70 Query: 61 KGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-----VPLIQAL 107 G R VDQL +E Q G E +TGGEPLLQ +P++Q Sbjct: 71 PGHRDFETHPNPVTVDQLLAWVERQNYPGLHES--ISITGGEPLLQAPFLREFLPVVQ-- 126 Query: 108 NKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 ++ G I +ET G P Q + G D+K+ Sbjct: 127 HRTGLPIYLETGGH-RPEQLAQILPYLNSIGMDMKLPS 163 >gi|296109842|ref|YP_003616791.1| Radical SAM domain protein [Methanocaldococcus infernus ME] gi|295434656|gb|ADG13827.1| Radical SAM domain protein [Methanocaldococcus infernus ME] Length = 234 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 26/149 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD-----TDFVGIQGT 60 I EIF ++ GEG + GR +F RF CNL C +CD + V ++ Sbjct: 2 ITEIFSSIMGEGKYIGRRYIFIRFPKCNL-----------NCIYCDERKNYKNRVEVEPG 50 Query: 61 KG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAV 116 G + + D+++E + TGGEPLL ++D L + L K+GF + Sbjct: 51 SGVFEEREIRDVKDIVKEVERLKTDDLFAISFTGGEPLLFDKLD-ELNKLLKKKGFRTHL 109 Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 E+NGT+ P+ + + + D+K+KG Sbjct: 110 ESNGTL--PERLVFTDI---GSIDIKLKG 133 >gi|220935394|ref|YP_002514293.1| putative radical activating enzyme [Thioalkalivibrio sp. HL-EbGR7] gi|219996704|gb|ACL73306.1| putative radical activating enzyme [Thioalkalivibrio sp. HL-EbGR7] Length = 227 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIFL+LQGE G VF R +GC L +C +CDT++ T G Sbjct: 20 ITEIFLSLQGESRSVGWPTVFVRLTGCPL-----------RCGYCDTEYA---FTGGEWM 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123 +++ + + + + +TGGEPL Q + L+ L G+E+++ET+G ++ Sbjct: 66 SLEAVLAQVASHGV------HHVTVTGGEPLAQRACLELLTRLCDAGYEVSLETSGALD 118 >gi|119896705|ref|YP_931918.1| putative radical activating enzyme [Azoarcus sp. BH72] gi|119669118|emb|CAL93031.1| conserved hypothetical radical activating enzyme [Azoarcus sp. BH72] Length = 220 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF ++QGE G F R +GC L +C +CDT + G Sbjct: 13 LTEIFASIQGESTRVGLPTTFVRLTGCPL-----------RCSWCDTAYAFTGG------ 55 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEP 124 L+D++++ G R+ +TGGEPL Q + L+ AL G+ +++ET+G Sbjct: 56 EARALSDVLDDVAALGL---RHVCVTGGEPLAQKYCLALLTALCDAGYSVSLETSG---- 108 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 +D V P+ DLK G E+ Sbjct: 109 --ALDIGGVDPRVSRVMDLKAPGSAEV 133 >gi|196247860|ref|ZP_03146562.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. G11MC16] gi|196212644|gb|EDY07401.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. G11MC16] Length = 244 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 20/137 (14%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G+ +F R +GC+ +CR+CD+ F + Sbjct: 7 VLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSAFT---WDGSAK 52 Query: 65 YNVDQLA--DLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 ++QL D+ + G + R+ ++GG PLL + L+ L+++G ++AVET G+ Sbjct: 53 EEIEQLTAEDIWQRLEAIGGRRFRHVTISGGNPLLLAALGELVALLHEKGVQVAVETQGS 112 Query: 122 I--EPPQGIDWICVSPK 136 + +D + +SPK Sbjct: 113 RWQDWLLDVDDVTISPK 129 >gi|302342762|ref|YP_003807291.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075] gi|301639375|gb|ADK84697.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075] Length = 212 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 21/122 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + EIF ++QGEG AG F R +GC L +C +CDT + G Sbjct: 1 MLEVCEIFQSIQGEGVDAGLPCAFVRLAGCPL-----------RCAWCDTAYAWQGGAAM 49 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 V A E + + LTGGEPL Q + P L+ AL G + VET+G Sbjct: 50 SLPEVLARALAFELELVE---------LTGGEPLAQAETPALLGALCDAGRRVLVETSGA 100 Query: 122 IE 123 ++ Sbjct: 101 LD 102 >gi|222055915|ref|YP_002538277.1| radical SAM protein [Geobacter sp. FRC-32] gi|221565204|gb|ACM21176.1| Radical SAM domain protein [Geobacter sp. FRC-32] Length = 249 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 29/132 (21%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-----FVGIQGTKG 62 E+F ++QGEG G VF RFSGCNL C +CDT+ + ++ T G Sbjct: 10 EVFSSIQGEGLLVGLRQVFIRFSGCNL-----------TCSYCDTEPDRTQYCQLESTPG 58 Query: 63 GR--------YNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLL--QVDVPLIQALNKRG 111 R VD+L +L+ W G + + +TGGEPLL Q+ L+ AL + Sbjct: 59 RRDFFQVENPVPVDRLVNLV-SGWQRGWPGIHHSISITGGEPLLCHQLLQELLPAL-RHY 116 Query: 112 FEIAVETNGTIE 123 I +ETNG + Sbjct: 117 LPIYLETNGILH 128 >gi|325958051|ref|YP_004289517.1| Radical SAM domain-containing protein [Methanobacterium sp. AL-21] gi|325329483|gb|ADZ08545.1| Radical SAM domain protein [Methanobacterium sp. AL-21] Length = 233 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 16/118 (13%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +I E+F + QGEG GR +F RFSGCNL C +CDT G Sbjct: 4 NINEVFSSFQGEGTLIGRRQIFVRFSGCNL-----------DCSYCDTP-ESRNPQYGEL 51 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + D+L + IT + TGGEPLL + + + L + F+ +ETNGT+ Sbjct: 52 ISTDELYSKV-NSIITPDFHS--ISFTGGEPLLHSNF-IKKFLEEYEFKSMLETNGTL 105 >gi|206603340|gb|EDZ39820.1| Putative radical activating enzyme [Leptospirillum sp. Group II '5-way CG'] Length = 212 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 21/128 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E F ++QGE ++G F R +GC L +CR+CDT + G + Sbjct: 3 ITETFRSIQGESRYSGWPCFFIRTTGCPL-----------RCRWCDTTYSFYGGEE---R 48 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124 VD L+ E +G +TGGEP +Q ++P L Q L RG + +ET+G Sbjct: 49 TVDS---LVGEAVSSGTS---LVEITGGEPFVQPELPALCQKLLDRGKTVLIETSGGFSV 102 Query: 125 PQGIDWIC 132 P G++ C Sbjct: 103 PSGLNRQC 110 >gi|304315357|ref|YP_003850504.1| glycyl radical-activating enzyme [Methanothermobacter marburgensis str. Marburg] gi|302588816|gb|ADL59191.1| predicted glycyl radical-activating enzyme [Methanothermobacter marburgensis str. Marburg] Length = 244 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 16/117 (13%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F ++QGEG G+ +F RF+GCNL C +CDT + G Sbjct: 5 IMEVFSSIQGEGLLVGKRQIFIRFAGCNL-----------NCSYCDTP-ESRDPSCGEEL 52 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + DQL ++ E +T + +TGGEPLL D + + L + +ETNG++ Sbjct: 53 SADQLLGMV-ENLVTPDFHS--LSITGGEPLLYPDF-IREFLEDSPWSALLETNGSL 105 >gi|119357772|ref|YP_912416.1| radical SAM domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119355121|gb|ABL65992.1| Radical SAM domain protein [Chlorobium phaeobacteroides DSM 266] Length = 223 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 55/121 (45%), Gaps = 21/121 (17%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 +K SI EIF ++QGE AG F R +GC C FCDT + G Sbjct: 3 LKELSISEIFHSIQGESSFAGWPCAFVRLAGCG-----------NGCNFCDTTYAETDGF 51 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119 + ++ D+I + T +TGGEPLLQ V PL+Q L G + +ET Sbjct: 52 ------MLEIPDIIMQ---TQAFRAPIIEITGGEPLLQPAVYPLMQQLCNLGETVLLETG 102 Query: 120 G 120 G Sbjct: 103 G 103 >gi|77919241|ref|YP_357056.1| organic radical activating protein [Pelobacter carbinolicus DSM 2380] gi|77545324|gb|ABA88886.1| organic radical activating enzyme [Pelobacter carbinolicus DSM 2380] Length = 253 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 33/132 (25%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-----IQGTKG 62 EIF ++QGEGG G VF R +GCNL C +CDTDF I+ G Sbjct: 15 EIFSSIQGEGGLVGCRQVFIRLAGCNL-----------DCAYCDTDFAPQDTCRIEDAPG 63 Query: 63 -GRYN-------VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-----VPLIQALNK 109 G++ ++ +AD++ LTGGEPLLQ VP++ K Sbjct: 64 SGQFRSVTNPVALEVVADILGAWTKRAPGMHHSISLTGGEPLLQGQLLRDWVPVL----K 119 Query: 110 RGFEIAVETNGT 121 I +ETNGT Sbjct: 120 EILPIHLETNGT 131 >gi|304408385|ref|ZP_07390032.1| Radical SAM domain protein [Paenibacillus curdlanolyticus YK9] gi|304342674|gb|EFM08521.1| Radical SAM domain protein [Paenibacillus curdlanolyticus YK9] Length = 240 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 21/119 (17%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 EIF T++GEG AG VF R GCNL +C +CDT + ++ Sbjct: 24 EIFETVEGEGTRAGFPTVFVRLFGCNL-----------RCVWCDTTYSYPPAKSEYSLSI 72 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRG--FEIAVETNGTI 122 ++ + ++ R+ TGGEPLL D L++AL + ++ VETNG I Sbjct: 73 REIVEKVKSY------RSRHICFTGGEPLLYGDRSAMLLKALAEIDGIVDVHVETNGAI 125 >gi|90022171|ref|YP_527998.1| putative radical activating enzyme [Saccharophagus degradans 2-40] gi|89951771|gb|ABD81786.1| Radical SAM [Saccharophagus degradans 2-40] Length = 216 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G VF R +GC L +C +CD+++ G G R Sbjct: 8 ITEIFHSLQGEARTVGLPTVFVRLTGCPL-----------RCHYCDSEY-AFHG--GERL 53 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 + +Q ++E+ G K Y +TGGEPL Q + L+ L G+ +++ET+G ++ Sbjct: 54 SFEQ---ILEQVAGFGAK---YVCVTGGEPLAQPGCIDLLSRLCDLGYNVSLETSGAMD 106 >gi|113474000|ref|YP_720061.1| hypothetical protein Tery_0080 [Trichodesmium erythraeum IMS101] gi|110165048|gb|ABG49588.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101] Length = 207 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 87/216 (40%), Gaps = 40/216 (18%) Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71 T+QGEG AG F R +GC C +CDT + G + L Sbjct: 16 TIQGEGYWAGTPVDFIRLAGC-----------PVGCHYCDTGYA--DGGISLPRQIQTLD 62 Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG----TIEPPQ 126 LI E + V++GGEP + +P LI + G ++++ET+G I P Sbjct: 63 KLINELF------SPRVVISGGEPFIHKQLPALINRIEATGRQVSIETSGCYWQNISPNA 116 Query: 127 GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS----LQPMDGPFLE 182 W+ +SPK K + ++ + E G + E +S L+ FL+ Sbjct: 117 ---WVTLSPKEHISHKYPIVPSMWTRASEIKLVIET--GKELEFYSKILLLKNQTPVFLQ 171 Query: 183 E-------NTNLAISYCFQNPKWRLSVQTHKFIGIR 211 L + P RLS+Q HK++GI+ Sbjct: 172 PEWYNRDFTLPLVQKLLQEYPHCRLSIQLHKYLGIK 207 >gi|158335495|ref|YP_001516667.1| radical SAM domain-containing protein [Acaryochloris marina MBIC11017] gi|158305736|gb|ABW27353.1| radical SAM domain protein [Acaryochloris marina MBIC11017] Length = 256 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 38/162 (23%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-------GI 57 ++ EIF +QGEG + G +F RF GC+L +C FCD+ I Sbjct: 8 NLVEIFSAIQGEGLNVGTRQIFIRFGGCDL-----------RCHFCDSAHTWTPKSSCQI 56 Query: 58 QGTKG----GRY----NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-----VPLI 104 + T G RY + Q+ + +++Q + G + LTGGEPLLQV +PL+ Sbjct: 57 EKTPGCRDFARYPNPVTLPQILEWVQDQDLPGMHDS--ISLTGGEPLLQVAFLQNLLPLL 114 Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWICVS-PKAGCDLKIKG 145 + + I +ET G P+ +D + G DLK+ Sbjct: 115 R--QQTSLPIYLETGG--HHPEALDPLLPHLDSVGMDLKLPS 152 >gi|228477559|ref|ZP_04062192.1| pyruvate-formate lyase-activating enzyme [Streptococcus salivarius SK126] gi|228250703|gb|EEK09901.1| pyruvate-formate lyase-activating enzyme [Streptococcus salivarius SK126] Length = 247 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T QGEG G+ +F R +GC+ C +CD+ F K R Sbjct: 20 VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 68 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122 D++ + ++ G + Y L+GG P LL ++ L+ L RG +AVET G+ Sbjct: 69 MTADEVIEALD---ALGTYD--YVTLSGGNPALLAANMAELVSKLKARGVTLAVETQGSR 123 Query: 123 --EPPQGIDWICVSPK 136 E + ID + +SPK Sbjct: 124 WQEWLKDIDQVTLSPK 139 >gi|56419512|ref|YP_146830.1| coenzyme PQQ synthesis [Geobacillus kaustophilus HTA426] gi|56379354|dbj|BAD75262.1| coenzyme PQQ synthesis [Geobacillus kaustophilus HTA426] Length = 244 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 24/139 (17%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G+ +F R +GC+ +CR+CD+ F K Sbjct: 7 VLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSAFTWDGSAKD-- 53 Query: 65 YNVDQLADLIEEQW----ITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119 ++QL +E W G + R+ ++GG PLL + LI L+++G +AVET Sbjct: 54 -EIEQLT--ADEIWRRLEAIGGRRFRHVTISGGNPLLIAALGELIALLHEKGMRVAVETQ 110 Query: 120 GTI--EPPQGIDWICVSPK 136 G+ + ID + +SPK Sbjct: 111 GSRWQDWLLDIDDVTLSPK 129 >gi|322516971|ref|ZP_08069861.1| ExsD protein [Streptococcus vestibularis ATCC 49124] gi|322124454|gb|EFX95949.1| ExsD protein [Streptococcus vestibularis ATCC 49124] Length = 238 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T QGEG G+ +F R +GC+ C +CD+ F K R Sbjct: 11 VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122 D++ + ++ G + Y L+GG P LL ++ L+ L RG +AVET G+ Sbjct: 60 MTADEVIEALD---ALGTYD--YVTLSGGNPALLAANMAQLVSKLKARGVTLAVETQGSR 114 Query: 123 --EPPQGIDWICVSPK 136 E + ID + +SPK Sbjct: 115 WQEWLKDIDQVTLSPK 130 >gi|312863321|ref|ZP_07723559.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Streptococcus vestibularis F0396] gi|311100857|gb|EFQ59062.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Streptococcus vestibularis F0396] Length = 238 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T QGEG G+ +F R +GC+ C +CD+ F K R Sbjct: 11 VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122 D++ + ++ G + Y L+GG P LL ++ L+ L RG +AVET G+ Sbjct: 60 MTADEVIEALD---ALGTYD--YVTLSGGNPALLAANMAQLVSKLKARGVTLAVETQGSR 114 Query: 123 --EPPQGIDWICVSPK 136 E + ID + +SPK Sbjct: 115 WQEWLKDIDQVTLSPK 130 >gi|261419199|ref|YP_003252881.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. Y412MC61] gi|319766015|ref|YP_004131516.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. Y412MC52] gi|261375656|gb|ACX78399.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. Y412MC61] gi|317110881|gb|ADU93373.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. Y412MC52] Length = 244 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 24/139 (17%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G+ +F R +GC+ +CR+CD+ F K Sbjct: 7 VLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSAFTWDGSAKD-- 53 Query: 65 YNVDQLADLIEEQW----ITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119 ++QL +E W G + R+ ++GG PLL + LI L+++G +AVET Sbjct: 54 -EIEQLT--ADEIWRRLEAIGGRRFRHVTISGGNPLLIAALGELIALLHEKGMRVAVETQ 110 Query: 120 GTI--EPPQGIDWICVSPK 136 G+ + ID + +SPK Sbjct: 111 GSRWQDWLLDIDDVTLSPK 129 >gi|297530832|ref|YP_003672107.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. C56-T3] gi|297254084|gb|ADI27530.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. C56-T3] Length = 244 Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 24/139 (17%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G+ +F R +GC+ +CR+CD+ F K Sbjct: 7 VLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSAFTWDGSAKD-- 53 Query: 65 YNVDQLADLIEEQW----ITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119 ++QL +E W G + R+ ++GG PLL + LI L+++G +AVET Sbjct: 54 -EIEQLT--ADEIWRRLEAIGGRRFRHVTISGGNPLLIAALGELIALLHEKGMRVAVETQ 110 Query: 120 GTI--EPPQGIDWICVSPK 136 G+ + ID + +SPK Sbjct: 111 GSRWQDWLLDIDDVTLSPK 129 >gi|15614805|ref|NP_243108.1| hypothetical protein BH2242 [Bacillus halodurans C-125] gi|10174861|dbj|BAB05961.1| BH2242 [Bacillus halodurans C-125] Length = 236 Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 18/140 (12%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 MK + EIF T+QGEG G+ +F R GC+ C +CD+ F Sbjct: 1 MKRIPVMEIFGPTVQGEGMVIGQKTMFVRTGGCDY-----------SCSWCDSAFTWDGS 49 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118 K D++ +EE I GE+ + ++GG P L + L+ L+ +G +A+ET Sbjct: 50 LKATLRTADEIIAKLEE--IGGERFS-HVSISGGNPALHKGIGELVDKLHDKGIRVALET 106 Query: 119 NGTIEPPQ--GIDWICVSPK 136 G++ ID + +SPK Sbjct: 107 QGSLWQDWFLKIDDLTISPK 126 >gi|288905497|ref|YP_003430719.1| radical SAM domain protein [Streptococcus gallolyticus UCN34] gi|288732223|emb|CBI13788.1| putative radical SAM domain protein [Streptococcus gallolyticus UCN34] Length = 237 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T QGEG G+ +F R GC+ C +CD+ F K R Sbjct: 10 ILEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEKPKR 58 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 VD++ + +++ G + Y L+GG P L + L+ L RG +A+ET G+ Sbjct: 59 MTVDEVIEQLDQ---LGTYD--YVTLSGGNPCLLANNMAELVAKLKARGVTLAIETQGSR 113 Query: 123 EPP--QGIDWICVSPK 136 + ID + +SPK Sbjct: 114 WQTWLKDIDQVTLSPK 129 >gi|254448671|ref|ZP_05062129.1| radical activating enzyme [gamma proteobacterium HTCC5015] gi|198261679|gb|EDY85966.1| radical activating enzyme [gamma proteobacterium HTCC5015] Length = 235 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG F R +GC L +C +CD+++ G + Sbjct: 28 ITEIFCSLQGESTLAGLPTTFVRLTGCPL-----------RCTYCDSEYAFF---GGDWW 73 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 + + L D ++ CV TGGEPL Q L+ AL RG+ +++ET+G ++ Sbjct: 74 SQEALLDRVDTLGAPN-----VCV-TGGEPLAQRSCHELMSALCDRGYRVSLETSGALD 126 >gi|306831581|ref|ZP_07464739.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426366|gb|EFM29480.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 237 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T QGEG G+ +F R GC+ C +CD+ F K R Sbjct: 10 ILEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEKPKR 58 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 VD++ + +++ G + Y L+GG P L + L+ L RG +A+ET G+ Sbjct: 59 MTVDEVIEQLDQ---LGTYD--YVTLSGGNPCLLANNMAELVAKLKARGVTLAIETQGSR 113 Query: 123 EPP--QGIDWICVSPK 136 + ID + +SPK Sbjct: 114 WQTWLKDIDQVTLSPK 129 >gi|297621468|ref|YP_003709605.1| Radical activating enzyme [Waddlia chondrophila WSU 86-1044] gi|297376769|gb|ADI38599.1| Radical activating enzyme [Waddlia chondrophila WSU 86-1044] Length = 228 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 27/138 (19%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 EIFL++QGE G F R + CNL +C +CDT + G+ Sbjct: 21 EIFLSIQGETSLTGLPTTFIRLASCNL-----------RCTWCDTPY------SFGKGES 63 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQ 126 L +IE G + +TGGEPLLQ V L+ + L + +++ET G++ + Sbjct: 64 SSLQSIIETVRSNG---ASHVCITGGEPLLQSQVYLLMETLCNLDYIVSLETGGSLSTEK 120 Query: 127 GIDWICVSPKAGCDLKIK 144 V P+ L IK Sbjct: 121 ------VDPRVITILDIK 132 >gi|323701737|ref|ZP_08113408.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574] gi|323533273|gb|EGB23141.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574] Length = 247 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 80/185 (43%), Gaps = 34/185 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD------F 54 M + ++EIF ++QGEG + G VF RF+GCN W C +CDT Sbjct: 1 MPVAYLQEIFSSVQGEGPYVGCRQVFIRFAGCN-WC----------CAYCDTPTEPQPAT 49 Query: 55 VGIQGTKGGRYNVD--------QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLI 104 ++ + G R V+ Q+A++I + + LTGGEPLL + LI Sbjct: 50 CVVEKSPGYRDFVNLANPMTPGQVAEIIRQYYNLSWHHS--VSLTGGEPLLHTEYIKDLI 107 Query: 105 QALNKRGFEIAVETNGTI-----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159 + L I +ETNGT+ E GID I + K +L F +V Sbjct: 108 KHLPSTRRGIFLETNGTLPDRLTEVITGIDIISMDVKLSSATGTPTPWDLHRHFIKVARQ 167 Query: 160 PENYI 164 E Y+ Sbjct: 168 RELYV 172 >gi|282850491|ref|ZP_06259870.1| radical SAM domain protein [Veillonella parvula ATCC 17745] gi|282579984|gb|EFB85388.1| radical SAM domain protein [Veillonella parvula ATCC 17745] Length = 251 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 19/108 (17%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 ++ EIF ++ GEG G + F R CN+ +C +CDT + + Sbjct: 2 NVIEIFASIDGEGSRQGLLTTFLRLHDCNI-----------RCSYCDTTYSYGIDSVFTE 50 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKR 110 V ++AD+IE +TGGEPLLQ V LI LN+R Sbjct: 51 MTVAEVADVIESLG------NHRITITGGEPLLQEAAVVELIDELNRR 92 >gi|169831395|ref|YP_001717377.1| radical SAM domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169638239|gb|ACA59745.1| Radical SAM domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 246 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 33/134 (24%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-----IQGT 60 + E+F ++QGEG + G +F RF+GCNL QC +CDT ++ T Sbjct: 7 VTEVFTSVQGEGPYLGCRHMFVRFAGCNL-----------QCAYCDTPAPAGRRCRVENT 55 Query: 61 KGGR--------YNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDV--PLIQALN 108 G R V L D W + + LTGGEPLL D + Sbjct: 56 PGRRVFTWYPNPVTVQMLLD-----WTSRAVAPHFHALALTGGEPLLHADFLESFLVGFR 110 Query: 109 KRGFEIAVETNGTI 122 + G +ETNGT+ Sbjct: 111 EYGGRCYLETNGTL 124 >gi|118580205|ref|YP_901455.1| radical SAM domain-containing protein [Pelobacter propionicus DSM 2379] gi|118502915|gb|ABK99397.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379] Length = 249 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 27/132 (20%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-----VGIQGT 60 I EIF ++QGEG AGR +F R + CNL +C +CDT F ++ + Sbjct: 7 IAEIFSSIQGEGYLAGRRQIFIRLTRCNL-----------ECSYCDTGFGEGESCLVENS 55 Query: 61 KGGR--------YNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVDVPLIQALNKRG 111 G +D+L D++ W + + LTGGEPLL + RG Sbjct: 56 PGSNVFEHFPRAVGLDRLMDIL-NAWTWALPRAHHSISLTGGEPLLFAPLLSDWLPRLRG 114 Query: 112 -FEIAVETNGTI 122 + +ETNGT+ Sbjct: 115 ILPVHLETNGTL 126 >gi|239906320|ref|YP_002953061.1| hypothetical protein DMR_16840 [Desulfovibrio magneticus RS-1] gi|239796186|dbj|BAH75175.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 210 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 53/122 (43%), Gaps = 21/122 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + EIF ++QGE +AG F R SGCNL CR+CDT G Sbjct: 1 MLKVHEIFASIQGESSYAGWPCGFLRLSGCNL-----------ACRWCDTLHA------G 43 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 Y +AD G +TGGEPLL P L++ L + VETNG+ Sbjct: 44 DSYAEMTVADATAALAGLGLP---LVEVTGGEPLLAPQTPELVKRLCDLDLTVLVETNGS 100 Query: 122 IE 123 + Sbjct: 101 FD 102 >gi|322373082|ref|ZP_08047618.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Streptococcus sp. C150] gi|321278124|gb|EFX55193.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Streptococcus sp. C150] Length = 238 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T QGEG G+ +F R +GC+ C +CD+ F K R Sbjct: 11 VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122 D++ ++ G + Y L+GG P LL ++ L+ L RG +AVET G+ Sbjct: 60 MTADEVIAALD---ALGTYD--YVTLSGGNPALLAANMAELVSKLKARGVTLAVETQGSR 114 Query: 123 --EPPQGIDWICVSPK 136 E + ID I +SPK Sbjct: 115 WQEWLRDIDQITLSPK 130 >gi|149187035|ref|ZP_01865342.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter sp. SD-21] gi|148829324|gb|EDL47768.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter sp. SD-21] Length = 244 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 65/148 (43%), Gaps = 36/148 (24%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT----DFVGIQGTKGG 63 EIF ++QGEG GR F R S CNL C +CDT F G Sbjct: 14 EIFASVQGEGPSVGRPVAFMRLSRCNL-----------ACVWCDTAYTWHFEGDNRPHRD 62 Query: 64 RYNVDQLAD---LIEEQ---WITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-----RGF 112 ++ A+ L EE+ IT + R V+TGGEPLLQ QAL K Sbjct: 63 GVTFERKANQVTLDEEEVAARITQLGQDR-LVITGGEPLLQA-----QALAKLLDLLPDI 116 Query: 113 EIAVETNGTIEPPQ----GIDWICVSPK 136 + +ETNGT + P ID VSPK Sbjct: 117 SVEIETNGTTKAPPRLDIRIDQFNVSPK 144 >gi|83942510|ref|ZP_00954971.1| radical SAM domain protein [Sulfitobacter sp. EE-36] gi|83846603|gb|EAP84479.1| radical SAM domain protein [Sulfitobacter sp. EE-36] Length = 236 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 15/139 (10%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M I E+F T+QGEG G VF R GC+ +C +CD+ Sbjct: 1 MSQLRIAEVFGPTIQGEGALIGEPTVFVRTGGCDY-----------RCAWCDSMHAVDPA 49 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + N+ A E Q ++ + L+GG P +Q PLIQ + G+ A ET Sbjct: 50 FRHDWANMSTDAVWQEVQRLS-DNTPLTVSLSGGNPAIQDFAPLIQLGHAAGYRFACETQ 108 Query: 120 GTIEPPQ--GIDWICVSPK 136 G+I P +D + +SPK Sbjct: 109 GSIAKPWFGQLDCLVLSPK 127 >gi|238018973|ref|ZP_04599399.1| hypothetical protein VEIDISOL_00833 [Veillonella dispar ATCC 17748] gi|237864457|gb|EEP65747.1| hypothetical protein VEIDISOL_00833 [Veillonella dispar ATCC 17748] Length = 247 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 21/109 (19%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-VGIQGTKGG 63 ++ EIF ++ GEG G + F R CN+ +C +CDT + GI T Sbjct: 2 NVIEIFASIDGEGSRQGLLTTFLRLHDCNI-----------RCSYCDTTYSYGIDSTFTD 50 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKR 110 V ++AD IE +TGGEPLLQ V LI LN+R Sbjct: 51 -MTVREVADAIESLG------NHRITITGGEPLLQEAAVVELIDELNRR 92 >gi|320353477|ref|YP_004194816.1| Radical SAM domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320121979|gb|ADW17525.1| Radical SAM domain protein [Desulfobulbus propionicus DSM 2032] Length = 223 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 20/116 (17%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 E F ++QGE AG +F R +GCNL +C +CD + + G V Sbjct: 10 ERFYSIQGESTRAGLPCLFVRLAGCNL-----------RCSYCDARYTWEE--TGETMTV 56 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 D++ E+ G +TGGEPL Q V PL++ L G + +ETNG++ Sbjct: 57 DEILAWAEQY------PGVMVEVTGGEPLRQNGVYPLMRNLLAAGLTVLLETNGSL 106 >gi|299135832|ref|ZP_07029016.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8] gi|298601956|gb|EFI58110.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8] Length = 227 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 21/115 (18%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 E++ ++QGE AG +F R +GCNL +C +CD+++ T G + Sbjct: 5 ELYKSVQGESSFAGVPCIFVRLAGCNL-----------RCAWCDSEYT---FTGGKPFTT 50 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 D++ IE + TGGEP+LQ +PL+Q L + + +ET+G Sbjct: 51 DEIVAQIE-----ALQPCPLIEFTGGEPMLQQKELLPLMQRLLDANYTLMMETSG 100 >gi|261405277|ref|YP_003241518.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Paenibacillus sp. Y412MC10] gi|261281740|gb|ACX63711.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Paenibacillus sp. Y412MC10] Length = 243 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 16/135 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG GR +F R +GC+ +C +CD+ F G+ Sbjct: 7 VMEIFGPTVQGEGMVVGRKTMFVRTAGCDY-----------RCSWCDSAFT-WDGSAKDS 54 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI- 122 ++ ++ +E + G + + L+GG P L + L+ L++ G +AVET G+ Sbjct: 55 ISLLSADEIWQELYRLGGERFDHVTLSGGNPALLPQLGALVDELHRHGITVAVETQGSRW 114 Query: 123 -EPPQGIDWICVSPK 136 + ID + +SPK Sbjct: 115 QDWLNHIDEVTISPK 129 >gi|52842258|ref|YP_096057.1| radical activating enzyme [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629369|gb|AAU28110.1| radical activating enzyme [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 217 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 21/117 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE G VF R +GC L +C++CDT + GG Sbjct: 10 ITEIFHSLQGESVTVGLPTVFVRLTGCPL-----------RCQYCDTAY----AFSGGE- 53 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 V ++ D++ + + ++ +TGGEPL Q + L+ L G+ +++ET+G Sbjct: 54 -VVEIDDILNK---VASYQCQHVCVTGGEPLAQPGCILLLSKLCDAGYSVSLETSGA 106 >gi|126642575|ref|YP_001085559.1| putative organic radical activating enzyme [Acinetobacter baumannii ATCC 17978] gi|126388459|gb|ABO12957.1| putative organic radical activating enzyme [Acinetobacter baumannii ATCC 17978] Length = 124 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 23/113 (20%) Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72 +QGE +G VF R +GC L +C +CDT + +G G R +++ + + Sbjct: 1 MQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERLSLEHIIE 46 Query: 73 LIEEQWITGEK-EGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 T EK + Y +TGGEPL Q + + L+Q L GF++++ET+G ++ Sbjct: 47 -------TAEKYQTPYICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSGALD 92 >gi|322378511|ref|ZP_08052961.1| hypothetical protein HSUHS1_0174 [Helicobacter suis HS1] gi|322380522|ref|ZP_08054704.1| organic radical activating enzyme [Helicobacter suis HS5] gi|321147051|gb|EFX41769.1| organic radical activating enzyme [Helicobacter suis HS5] gi|321149072|gb|EFX43522.1| hypothetical protein HSUHS1_0174 [Helicobacter suis HS1] Length = 246 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 12/140 (8%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTKGGR 64 E F +LQGEG G+ +VF R GCN G + S + CD+ + K Sbjct: 7 ETFYSLQGEGSCVGQPSVFIRLGGCNFKCVGFGVKSMIDSKEVVGCDSAYAVYPNAKWSY 66 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----VPLIQALNKRGFEIAVETNG 120 Q L + + + VLTGGEP L + + +Q L+ RG I VE+NG Sbjct: 67 LKSAQ-ELLTRLEPLIYPSTLPHIVLTGGEPSLHFNNLILLEALQVLHTRGHTIWVESNG 125 Query: 121 TI----EPPQGIDWICVSPK 136 ++ + P +SPK Sbjct: 126 SVFFEFKAPLNTLHFTLSPK 145 >gi|326203402|ref|ZP_08193266.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] gi|325986222|gb|EGD47054.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] Length = 249 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 34/126 (26%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV------GIQG 59 I EIF ++ GEG AG V F R +GCNL +C +CDT + GIQ Sbjct: 13 IIEIFNSVSGEGISAGSVVTFVRAAGCNL-----------RCNYCDTKYSYNELGNGIQV 61 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL----LQVDVPLIQALNKRGFEIA 115 K D + +++E + + TGGEPL + +PL A +GF++ Sbjct: 62 LKP-----DGIVNILESY------NCKNVLCTGGEPLELNKAKRYLPLYLA--SKGFKVR 108 Query: 116 VETNGT 121 +ETNG+ Sbjct: 109 IETNGS 114 >gi|289207754|ref|YP_003459820.1| radical SAM protein [Thioalkalivibrio sp. K90mix] gi|288943385|gb|ADC71084.1| Radical SAM domain protein [Thioalkalivibrio sp. K90mix] Length = 232 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 21/119 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E+F++LQGE +G F R +GC L +CR+CD+ + +GG Sbjct: 25 ITEMFVSLQGEAADSGWPTAFVRLTGCPL-----------RCRWCDSAYA----FEGGEA 69 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 L ++ W+ G+ R+ +TGGEPL Q L+ L G+ +++ET+G ++ Sbjct: 70 RA--LDSIL--AWV-GQTGVRHVCVTGGEPLAQPGCRELLARLCDDGYRVSLETSGALD 123 >gi|149194883|ref|ZP_01871977.1| hypothetical protein CMTB2_08312 [Caminibacter mediatlanticus TB-2] gi|149135042|gb|EDM23524.1| hypothetical protein CMTB2_08312 [Caminibacter mediatlanticus TB-2] Length = 232 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 13/122 (10%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 L I EIF ++QGEG ++G ++F R GCNL ++ CD+ + + K Sbjct: 5 LLPISEIFYSIQGEGKYSGTPSIFVRVGGCNLTCPGFGNKG------CDSYYAVDKSYKN 58 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 N+ + I++++ K + V+TGGEP L + PLI+ + EI +ETN Sbjct: 59 EWENLS--IEEIKKEFSKYLKFNPHLVITGGEPTLYYEKLYPLIEWFSG---EITIETNA 113 Query: 121 TI 122 TI Sbjct: 114 TI 115 >gi|145591319|ref|YP_001153321.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM 13514] gi|145283087|gb|ABP50669.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 216 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 23/137 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +LQGEG + G+ AVF R +GC + +C +CDT + + G Sbjct: 3 VLEIFASLQGEGVNLGKPAVFVRLAGCPI-----------RCAYCDTKY-SWDFSAGVEM 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ-ALNKRGF-EIAVETNGTIE 123 +V+++ + G + V+TGGEPL+ L A RG + VET+G Sbjct: 51 SVEEVFAKAASLGVRG-----HVVVTGGEPLIWQRRGLENLACALRGLGAVEVETSGAYS 105 Query: 124 PP----QGIDWICVSPK 136 P +D+ VSPK Sbjct: 106 PTPELDSCVDYYDVSPK 122 >gi|298250150|ref|ZP_06973954.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Ktedonobacter racemifer DSM 44963] gi|297548154|gb|EFH82021.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Ktedonobacter racemifer DSM 44963] Length = 247 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 15/135 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I E+F T+QGEG G+ VF R GC+ +C+ CDT + + +G Sbjct: 9 ISELFGCTIQGEGALIGKPTVFVRTGGCDY-----------RCQRCDTLYAVLPEHRG-E 56 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + ++ + L+GG P +Q L+ + G+ A+ET G+I Sbjct: 57 WQQMTTQEVFAQVRELAHNRPILVTLSGGNPAMQPLEELLDLGHTEGYTFAIETQGSIAQ 116 Query: 125 P--QGIDWICVSPKA 137 P +D++ +SPKA Sbjct: 117 PWFAKLDYLTLSPKA 131 >gi|298675035|ref|YP_003726785.1| radical SAM domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298288023|gb|ADI73989.1| Radical SAM domain protein [Methanohalobium evestigatum Z-7303] Length = 239 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 48/108 (44%), Gaps = 29/108 (26%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-----DFVGIQGT 60 I EIF ++QGEG + G VF RF GCNL QC++CDT DF + Sbjct: 5 ISEIFCSVQGEGPYVGVRQVFVRFIGCNL-----------QCQYCDTQREYVDFCRFEEN 53 Query: 61 KGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 G +V+ +A+ IE LTGGEPL+ D Sbjct: 54 PGSDEFELIPNPLDVNTVAESIE-----SFSSVHSVSLTGGEPLIHAD 96 >gi|290580634|ref|YP_003485026.1| hypothetical protein SmuNN2025_1108 [Streptococcus mutans NN2025] gi|254997533|dbj|BAH88134.1| hypothetical protein [Streptococcus mutans NN2025] Length = 238 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T QGEG G+ +F R GC+ C +CD+ F K Sbjct: 11 VLEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEKPTM 59 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122 DQ+ + +++ G + Y L+GG P LL ++ L++ L KR +AVET G+ Sbjct: 60 MTSDQIIEALDK---LGTYD--YVTLSGGNPCLLAANMAQLVRKLKKRQVTLAVETQGSR 114 Query: 123 --EPPQGIDWICVSPK 136 E + ID + +SPK Sbjct: 115 WQEWLKAIDQVTLSPK 130 >gi|56476931|ref|YP_158520.1| radical activating enzyme [Aromatoleum aromaticum EbN1] gi|56312974|emb|CAI07619.1| SAM radical family enzyme similar to queE gene product; involved in queuosine biosynthesis [Aromatoleum aromaticum EbN1] Length = 221 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 29/147 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +LQGE G VF R +GC L +C +CDT++ +GG Sbjct: 14 LTEIFASLQGESTRVGLPTVFVRLTGCPL-----------RCVWCDTEY----AFQGGES 58 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 +A ++EE + G CV TGGEPL Q + L+ AL G +++ET+G Sbjct: 59 R--SIASIVEE--VLGHGIEHVCV-TGGEPLAQKSCLALLAALCDAGLSVSLETSG---- 109 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149 +D V P+ DLK G E+ Sbjct: 110 --ALDIAAVDPRVSRVMDLKAPGSGEV 134 >gi|24379363|ref|NP_721318.1| hypothetical protein SMU.916c [Streptococcus mutans UA159] gi|24377290|gb|AAN58624.1|AE014932_7 conserved hypothetical protein [Streptococcus mutans UA159] Length = 243 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T QGEG G+ +F R GC+ C +CD+ F K Sbjct: 16 VLEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEKPTM 64 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122 DQ+ + +++ G + Y L+GG P LL ++ L++ L KR +AVET G+ Sbjct: 65 MTSDQIIEALDK---LGTYD--YVTLSGGNPCLLAANMAQLVRKLKKRQVTLAVETQGSR 119 Query: 123 --EPPQGIDWICVSPK 136 E + ID + +SPK Sbjct: 120 WQEWLKAIDQVTLSPK 135 >gi|322434490|ref|YP_004216702.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9] gi|321162217|gb|ADW67922.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9] Length = 227 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 21/115 (18%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 E++ ++QGE G +F RF+GCNL +C +CD+++ T G + Sbjct: 5 ELYKSVQGESSFTGLPCIFVRFAGCNL-----------RCAWCDSEYT---FTGGNPFTQ 50 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 +++ IE + TGGEP+L +PL+ L +G+ + +ET+G Sbjct: 51 EEVIAQIE-----ALAPCKLVEFTGGEPMLHAKELLPLMDVLLTQGYTLMMETSG 100 >gi|118474370|ref|YP_891426.1| radical SAM domain-containing protein [Campylobacter fetus subsp. fetus 82-40] gi|261886249|ref|ZP_06010288.1| radical SAM domain-containing protein [Campylobacter fetus subsp. venerealis str. Azul-94] gi|118413596|gb|ABK82016.1| radical SAM domain protein [Campylobacter fetus subsp. fetus 82-40] Length = 241 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 15/130 (11%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL----WSGREQDRLSAQCRF-CDT-DFVG 56 + ++ E F ++QGEG +GR ++F R GCNL + + + + + CDT V Sbjct: 1 MVNVVEYFTSVQGEGKFSGRYSLFIRLGGCNLSCKGFGVKIKSPKTGEILVGCDTIKAVQ 60 Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----VPLIQALNKRGF 112 + + +++ + L +L++E V+TGGEPLL + IQ ++ + Sbjct: 61 TEHFEHNKFDFEALVNLVKETEFKP-----LIVITGGEPLLWYKDEDLIKFIQWCFEQNY 115 Query: 113 EIAVETNGTI 122 E+ ETNG+I Sbjct: 116 EVHFETNGSI 125 >gi|301167425|emb|CBW27007.1| putative radical SAM domain protein [Bacteriovorax marinus SJ] Length = 233 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 44/219 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT----DFVG 56 MK + I I+ +GEG H G +F RF GC + C CD+ DF Sbjct: 1 MKSFLINSIYPATEGEGVHIGTPQIFVRFQGC-----------AIGCLNCDSKDTWDFT- 48 Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-----QVDVPLIQALNKRG 111 G + +D++ IE+ GE+ R + TGG+PL QV + L+ L +RG Sbjct: 49 -----GRNWTLDEVLGAIEDA--GGERIKRVSI-TGGDPLHPSHTEQVSL-LVSTLKERG 99 Query: 112 FEIAVETNGT---IEPPQGIDWICV---SPKAGCDLKIKGGQELKLVFP---QVNVSPEN 162 + I +E GT E ID+I +P G +++ +L +P Q+ E Sbjct: 100 YFINIEAAGTRVVDEIFNKIDFISFDFKTPSTGVKTRVQNLNKLIQNYPNKFQIKAVVET 159 Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLS 201 F+ + + L N +L+ +C P + L+ Sbjct: 160 REDFE----ATLDIYNELLSMNESLSFPWCL-TPSYNLN 193 >gi|306833726|ref|ZP_07466852.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus bovis ATCC 700338] gi|304424063|gb|EFM27203.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus bovis ATCC 700338] Length = 237 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 21/156 (13%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T QGEG G+ +F R GC+ C +CD+ F K R Sbjct: 10 ILEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEKPKR 58 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 D++ + +++ G + Y L+GG P L + L+ L RG +A+ET G+ Sbjct: 59 MTTDEVIEQLDQ---LGTYD--YVTLSGGNPCLLANNMAELVAKLKARGVTLAIETQGSR 113 Query: 123 EPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156 + ID + +SPK + L + Q+ Sbjct: 114 WQTWLKDIDQVTLSPKPPSSKMTVNFETLDFIVSQL 149 >gi|325978487|ref|YP_004288203.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178415|emb|CBZ48459.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 237 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T QGEG G+ +F R GC+ C +CD+ F K R Sbjct: 10 ILEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEKPKR 58 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 D++ + +++ G + Y L+GG P L + L+ L RG +A+ET G+ Sbjct: 59 MTADEVIEQLDQ---LGTYD--YVTLSGGNPCLLANNMAELVAKLKARGVTLAIETQGSR 113 Query: 123 EPP--QGIDWICVSPK 136 + ID + +SPK Sbjct: 114 WQTWLKDIDQVTLSPK 129 >gi|189219299|ref|YP_001939940.1| Organic radical activating enzyme [Methylacidiphilum infernorum V4] gi|189186157|gb|ACD83342.1| Organic radical activating enzyme [Methylacidiphilum infernorum V4] Length = 233 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 32/130 (24%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG-R 64 + E+FL++QGE AG F R +GCNL +CR+CDT + G R Sbjct: 23 VNEMFLSIQGESTFAGYPCAFIRLTGCNL-----------RCRWCDTTYAFSGGKLMPIR 71 Query: 65 YNVDQL----ADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119 +DQ+ L+E +TGGEPLLQ + + L+ L G+E+ +ET+ Sbjct: 72 AVIDQVKAYDVPLVE--------------ITGGEPLLQKNSLYLLTLLCDLGYEVLLETS 117 Query: 120 GTIEPPQGID 129 G++ P +D Sbjct: 118 GSL-PVDRVD 126 >gi|329925161|ref|ZP_08280104.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Paenibacillus sp. HGF5] gi|328939994|gb|EGG36327.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Paenibacillus sp. HGF5] Length = 264 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 16/135 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG GR +F R +GC+ +C +CD+ F G+ Sbjct: 28 VMEIFGPTVQGEGMVVGRKTMFVRTAGCDY-----------RCSWCDSAFT-WDGSAKDS 75 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI- 122 ++ ++ +E + G + + L+GG P L + L+ L++ G +AVET G+ Sbjct: 76 ISLLSADEIWQELYRLGGERFDHVTLSGGNPALLPQLGALVDELHRYGITVAVETQGSRW 135 Query: 123 -EPPQGIDWICVSPK 136 + ID + +SPK Sbjct: 136 QDWLNHIDEVTISPK 150 >gi|78188483|ref|YP_378821.1| radical activating enzyme, putative [Chlorobium chlorochromatii CaD3] gi|78170682|gb|ABB27778.1| radical activating enzyme, putative [Chlorobium chlorochromatii CaD3] Length = 226 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 21/116 (18%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF ++QGE AG F R +GC C +CDT + +G + Sbjct: 11 ISEIFYSIQGEAFFAGFPCAFIRLAGCG-----------HGCNYCDTSYAEEKGELMAQA 59 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 + + A I +TGGEPLLQ V PL++ L RG ++ +ET G Sbjct: 60 EIIKQALSYHAPIIE---------ITGGEPLLQPAVYPLMEELCNRGEQVLLETGG 106 >gi|322392672|ref|ZP_08066132.1| ExsD protein [Streptococcus peroris ATCC 700780] gi|321144664|gb|EFX40065.1| ExsD protein [Streptococcus peroris ATCC 700780] Length = 238 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T QGEG G+ +F R +GC+ C +CD+ F K R Sbjct: 11 VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122 D++ +++ G + Y L+GG P LL ++ L+ L +RG +AVET G+ Sbjct: 60 MTADEVIAALDK---LGTYD--YVTLSGGNPALLAANMAELVTKLKERGVTLAVETQGSR 114 Query: 123 EPP--QGIDWICVSPK 136 + ID + +SPK Sbjct: 115 WQTWLKDIDQVTLSPK 130 >gi|292669396|ref|ZP_06602822.1| radical SAM domain protein [Selenomonas noxia ATCC 43541] gi|292648957|gb|EFF66929.1| radical SAM domain protein [Selenomonas noxia ATCC 43541] Length = 243 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 31/135 (22%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-------FVGI 57 +I EIF ++QGEG + G +F R GCNL C +CDT+ + Sbjct: 4 NIIEIFSSIQGEGKYVGCRQIFVRLEGCNL-----------DCTYCDTENEIGRHPHCMV 52 Query: 58 QGTKGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 + G + + A++I I G+ +TGGEPLL VP I+ L Sbjct: 53 EEDAGSHALISYENPLSAQRTAEIIAR--IVGDVPHHSLSMTGGEPLLH--VPFIRELAA 108 Query: 110 R-GFEIAVETNGTIE 123 + +ETNGT++ Sbjct: 109 HVHLPLFLETNGTLD 123 >gi|95929552|ref|ZP_01312294.1| Radical SAM [Desulfuromonas acetoxidans DSM 684] gi|95134249|gb|EAT15906.1| Radical SAM [Desulfuromonas acetoxidans DSM 684] Length = 251 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 63/149 (42%), Gaps = 45/149 (30%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E+F ++QGEG G VF R +GCNL C +CDTDF Q +K R Sbjct: 11 VVELFSSIQGEGPLVGCRQVFLRLAGCNL-----------DCAYCDTDF---QPSKCARI 56 Query: 66 NVDQ-----------------LADLIEEQWITGEKEGRYCV-LTGGEPLLQVD-----VP 102 LA L W + + + LTGGEPLL + +P Sbjct: 57 ETQPGSEQFLYWENPLESTRLLAHL--STWKHQQPHLHHSLSLTGGEPLLHAEALKAWLP 114 Query: 103 LIQALNKRGFEIAVETNGTIEPPQGIDWI 131 + L F I +ETNGT+ PQ + + Sbjct: 115 QLSTL----FPIQLETNGTL--PQALQLV 137 >gi|39996820|ref|NP_952771.1| radical SAM domain-containing protein [Geobacter sulfurreducens PCA] gi|39983708|gb|AAR35098.1| radical SAM domain protein [Geobacter sulfurreducens PCA] gi|298505829|gb|ADI84552.1| 7-carboxy-7-deazaguanine synthase [Geobacter sulfurreducens KN400] Length = 250 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 30/140 (21%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT------DFVGIQG 59 ++E+F ++QGEG G VF RF GCNL C +CDT + I+ Sbjct: 8 LEEVFSSVQGEGMLIGLRQVFIRFRGCNL-----------TCDYCDTPAGTPAEPCRIEQ 56 Query: 60 TKGGR--------YNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVDVPLIQALN-- 108 T G R ++D++A L+ E W G + +TGGEPLL+ D+ L+Q L Sbjct: 57 TPGRRDFVPADNPVSLDRVAALV-EGWQRGWPGVHDSISITGGEPLLRHDI-LMQWLPVL 114 Query: 109 KRGFEIAVETNGTIEPPQGI 128 + + +ETNG + G+ Sbjct: 115 REHLPVYLETNGVMHAALGL 134 >gi|145219296|ref|YP_001130005.1| radical SAM domain-containing protein [Prosthecochloris vibrioformis DSM 265] gi|145205460|gb|ABP36503.1| Radical SAM domain protein [Chlorobium phaeovibrioides DSM 265] Length = 223 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 57/135 (42%), Gaps = 36/135 (26%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 L I EIF ++QGE +AG F R +GC S CR+CD+ + Sbjct: 5 LLKISEIFRSIQGESSYAGWPCAFIRLAGC-----------SHNCRYCDSLY-------- 45 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVL-------TGGEPLLQVDVP-LIQALNKRGFEI 114 A EE+ T E R L TGGEPL Q V L+ L G ++ Sbjct: 46 --------ARNTEERLTTREVVSRALALKTEIIEITGGEPLEQPGVHQLMTELCNTGRKV 97 Query: 115 AVETNGTIEPPQGID 129 +ET G I P GID Sbjct: 98 LLETGGFI-PVAGID 111 >gi|254504058|ref|ZP_05116209.1| radical SAM domain protein [Labrenzia alexandrii DFL-11] gi|222440129|gb|EEE46808.1| radical SAM domain protein [Labrenzia alexandrii DFL-11] Length = 242 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G+ VF R GC+ +C +CDT + Sbjct: 8 VNEIFGPTIQGEGALIGQPTVFVRTGGCDY-----------RCSWCDTLHAVDSAYRDDW 56 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + + A L++ + ++G K L+GG P +Q LI+ + G+ A+ET G+I Sbjct: 57 HPMTPQAILMQIEILSGGKP-LMVSLSGGNPAIQPLGSLIELGKREGYRFALETQGSIAK 115 Query: 125 P--QGIDWICVSPK 136 +D + +SPK Sbjct: 116 DWFAALDVLTLSPK 129 >gi|167630604|ref|YP_001681103.1| radical sam domain protein, putative [Heliobacterium modesticaldum Ice1] gi|167593344|gb|ABZ85092.1| radical sam domain protein, putative [Heliobacterium modesticaldum Ice1] Length = 246 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 61/136 (44%), Gaps = 36/136 (26%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EI ++ QGEG G VF RF GCNL C +CDT G++G R Sbjct: 10 LVEIMVSAQGEGPWIGCRQVFLRFFGCNL-----------SCSYCDT-----PGSRGPRP 53 Query: 66 NV--------DQLADLIEEQWITGEKEGRY---------CVLTGGEPLLQVDV--PLIQA 106 + L DL E +T ++ Y LTGGEPLL V+ LI Sbjct: 54 SACRIEKEPGSSLFDLWENP-VTVDRVAEYLCHTVPIHSVSLTGGEPLLHVEFIQQLIPL 112 Query: 107 LNKRGFEIAVETNGTI 122 L + ++ +ETNGT+ Sbjct: 113 LGAQRPDLYLETNGTL 128 >gi|295401301|ref|ZP_06811273.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus thermoglucosidasius C56-YS93] gi|312111879|ref|YP_003990195.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. Y4.1MC1] gi|294976708|gb|EFG52314.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus thermoglucosidasius C56-YS93] gi|311216980|gb|ADP75584.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. Y4.1MC1] Length = 243 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 16/139 (11%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 K + EIF T+QGEG G+ +F R +GC+ CR+CD+ F G+ Sbjct: 3 KKIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCRWCDSAFTW-DGS 50 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119 G + E G R+ ++GG P L+Q L+ L +G IAVET Sbjct: 51 AKGEIRQMTAGQIWERLCELGGDRFRHVTISGGNPVLIQALEELVLLLKNKGVRIAVETQ 110 Query: 120 GTI--EPPQGIDWICVSPK 136 G+ + ID + +SPK Sbjct: 111 GSRWQDWLYDIDDVTISPK 129 >gi|147677735|ref|YP_001211950.1| organic radical activating enzymes [Pelotomaculum thermopropionicum SI] gi|146273832|dbj|BAF59581.1| organic radical activating enzymes [Pelotomaculum thermopropionicum SI] Length = 245 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 61/138 (44%), Gaps = 31/138 (22%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56 M+ Y + EIF ++QGEG G VF RF GCNL C FCDT + G Sbjct: 1 MRAY-VSEIFSSVQGEGLLTGCRQVFIRFYGCNL-----------NCSFCDTKYGGPPAC 48 Query: 57 --IQGTKGG---RY--NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-----VPLI 104 I+ G RY N ++ + LTGGEPLL +PL+ Sbjct: 49 CRIESLPAGGDFRYLPNPLKVGEAASAAASYDLSLHHSVSLTGGEPLLHTAFLKELIPLV 108 Query: 105 QALNKRGFEIAVETNGTI 122 + + G I +ETNGT+ Sbjct: 109 KG-TRHG--IYLETNGTL 123 >gi|157692046|ref|YP_001486508.1| queuosine biosynthesis protein [Bacillus pumilus SAFR-032] gi|157680804|gb|ABV61948.1| queuosine biosynthesis protein [Bacillus pumilus SAFR-032] Length = 243 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 16/139 (11%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 K + EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ Sbjct: 3 KAIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGS 50 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119 D+++E G + + ++GG P LL+ LI L+++G + A+ET Sbjct: 51 AKHDIQWLHAEDIVKELKRIGGQAFSHVTISGGNPALLKQMESLIDLLHEKGIDTALETQ 110 Query: 120 GTIEPP--QGIDWICVSPK 136 GT+ ID + +SPK Sbjct: 111 GTMYQDWFLKIDDLTISPK 129 >gi|254464092|ref|ZP_05077503.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Rhodobacterales bacterium Y4I] gi|206685000|gb|EDZ45482.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Rhodobacterales bacterium Y4I] Length = 236 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 15/139 (10%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M I EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 1 MTTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDS-MHAVDS 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + V D++ E + ++GG P +Q P+I + G+ A ET Sbjct: 49 AYRHDWAVKTPEDVMAEVRRLSGGKPLTVSISGGNPAIQDFAPVIAIGKEEGYRFACETQ 108 Query: 120 GTIEPP--QGIDWICVSPK 136 G++ P +D + +SPK Sbjct: 109 GSVSQPWFADLDTLVLSPK 127 >gi|126459256|ref|YP_001055534.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|126248977|gb|ABO08068.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548] Length = 216 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 35/143 (24%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-----GIQGT 60 + EIF +LQGEG + G+ AVF R +GC + +C +CDT++ G++ + Sbjct: 3 VLEIFASLQGEGVNLGKPAVFVRLAGCPI-----------RCVYCDTEYSWDFNGGVEMS 51 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV---PLIQALNKRGFEIAVE 117 G + EE + G + V+TGGEPL+ + L+ L + G + VE Sbjct: 52 PG------EAVRRAEELGVRG-----HVVVTGGEPLVWMRRGLEELVCGLRRLG-AVEVE 99 Query: 118 TNGTIEPPQGIDWIC----VSPK 136 T+G P +D VSPK Sbjct: 100 TSGVYAPTPELDACADFYDVSPK 122 >gi|85707657|ref|ZP_01038723.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter sp. NAP1] gi|85689191|gb|EAQ29194.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter sp. NAP1] Length = 245 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 59/146 (40%), Gaps = 32/146 (21%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV------------ 55 EIF ++QGEG G F R S CNL C +CDT + Sbjct: 15 EIFASIQGEGPSMGTPVAFIRLSRCNL-----------ACTWCDTAYTWRFEGDNRPHRD 63 Query: 56 GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN-KRGFEI 114 GI+ + A + + G+K V+TGGEPL+Q PL L E+ Sbjct: 64 GIEYERKANQVALSPAKAAAKIAVLGQKR---LVITGGEPLMQCG-PLADMLAILPDIEV 119 Query: 115 AVETNGTIEPPQGIDWIC----VSPK 136 +ETNGT ID VSPK Sbjct: 120 EIETNGTTRASAHIDIRVDQYNVSPK 145 >gi|325294503|ref|YP_004281017.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064951|gb|ADY72958.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 224 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 98/239 (41%), Gaps = 52/239 (21%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +I E+F +LQGEG G + F R SGC S C++CDT + KG Sbjct: 6 AISELFTSLQGEGLDLGAPSFFIRISGC-----------SIGCKYCDTKY---SWKKGKL 51 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALN--KRGFEIAVETNGT 121 +++D L + + I ++TGGEP+ + ++ LI+ L+ + +I +ET G Sbjct: 52 WDIDSLVKEVLKSKIPE------VIVTGGEPVEEKNLSILIKRLSDLETVRKITLETCGH 105 Query: 122 I------EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS--- 172 I P I P G D + ++ + QV + Y D E Sbjct: 106 IFRDDLKYPKLKIVLSPKPPTMGVDFPTETLEKFLTTYEQVYIKFAAYDQKDLEVIKEFA 165 Query: 173 ------------LQPMDGPFLEENTN------LAIS--YCFQNPKWRLSVQTHKFIGIR 211 +QP++ PF + + L IS + + ++ Q HK IG++ Sbjct: 166 YKNKNLIRAPIVIQPLEVPFEDYSYTSKRIFELVISDRKFINDFEIKIIPQIHKLIGLK 224 >gi|291533826|emb|CBL06939.1| Organic radical activating enzymes [Megamonas hypermegale ART12/1] Length = 249 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 43/195 (22%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV---------- 55 + EIF ++QGEG + G +F R GCN+ C +CDTD + Sbjct: 8 VSEIFSSIQGEGKYVGCRQLFIRLIGCNM-----------DCPYCDTDKLAHSNLVPCVL 56 Query: 56 ----GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNK 109 G +G + +D L D++ ++ +TGGEPLL Q+ + L + L Sbjct: 57 EKCEGYEGDLELKNPLD-LNDIMPYINYRLQQPHHSISITGGEPLLYPQIILELAKNLKP 115 Query: 110 RGFEIAVETNGTI-----EPPQGIDWICVSPKAGCDLKIKGGQE----LKL-----VFPQ 155 + +ETNGT+ + ID I + K D+ QE LKL V+ + Sbjct: 116 LSIPLFLETNGTLVKQLAQVIDEIDIISMDMKLPSDIGKAYWQEHEEFLKLASKKDVYVK 175 Query: 156 VNVSPENYIGFDFER 170 + VS E+ + DFE+ Sbjct: 176 IVVSNESTVE-DFEK 189 >gi|83953730|ref|ZP_00962451.1| radical SAM domain protein [Sulfitobacter sp. NAS-14.1] gi|83841675|gb|EAP80844.1| radical SAM domain protein [Sulfitobacter sp. NAS-14.1] Length = 236 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 15/139 (10%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M I E+F T+QGEG G VF R GC+ +C +CD+ Sbjct: 1 MSQLRIAEVFGPTIQGEGALIGEPTVFVRTGGCDY-----------RCAWCDSMHAVDPA 49 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + ++ A E Q ++ + L+GG P +Q PLIQ + G+ A ET Sbjct: 50 FRHDWASMSTDAVWNEVQRLS-DNTPLTVSLSGGNPAIQDFAPLIQLGHAAGYRFACETQ 108 Query: 120 GTIEPPQ--GIDWICVSPK 136 G+I P +D + +SPK Sbjct: 109 GSIAKPWFGQLDCLVLSPK 127 >gi|55820876|ref|YP_139318.1| putative coenzyme PQQ synthesis protein [Streptococcus thermophilus LMG 18311] gi|55822792|ref|YP_141233.1| putative coenzyme PQQ synthesis protein [Streptococcus thermophilus CNRZ1066] gi|116627685|ref|YP_820304.1| putative coenzyme PQQ synthesis protein [Streptococcus thermophilus LMD-9] gi|55736861|gb|AAV60503.1| hypothetical protein, coenzyme PQQ synthesis homologue [Streptococcus thermophilus LMG 18311] gi|55738777|gb|AAV62418.1| hypothetical protein, coenzyme PQQ synthesis homologue [Streptococcus thermophilus CNRZ1066] gi|116100962|gb|ABJ66108.1| Pyruvate-formate lyase-activating enzyme [Streptococcus thermophilus LMD-9] Length = 238 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T QGEG G+ +F R +GC+ C +CD+ F K R Sbjct: 11 VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122 D++ + ++ G + Y L+GG P LL ++ L+ L R +AVET G+ Sbjct: 60 MTADEVIEALD---ALGTYD--YVTLSGGNPALLAANMAELVSKLKARDVTLAVETQGSR 114 Query: 123 --EPPQGIDWICVSPK 136 E + ID + +SPK Sbjct: 115 WQEWLREIDQVTLSPK 130 >gi|312278215|gb|ADQ62872.1| Pyruvate-formate lyase-activating enzyme [Streptococcus thermophilus ND03] Length = 238 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T QGEG G+ +F R +GC+ C +CD+ F K R Sbjct: 11 VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122 D++ + ++ G + Y L+GG P LL ++ L+ L R +AVET G+ Sbjct: 60 MTADEVIEALD---ALGTYD--YVTLSGGNPALLAANMAELVSKLKARDVTLAVETQGSR 114 Query: 123 --EPPQGIDWICVSPK 136 E + ID + +SPK Sbjct: 115 WQEWLREIDQVTLSPK 130 >gi|163742266|ref|ZP_02149654.1| organic-radical-activating protein [Phaeobacter gallaeciensis 2.10] gi|161384596|gb|EDQ08977.1| organic-radical-activating protein [Phaeobacter gallaeciensis 2.10] Length = 246 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 59/138 (42%), Gaps = 23/138 (16%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ R Sbjct: 16 IAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDS-----LHAVDSR 59 Query: 65 YNVDQLADLIEEQW--ITGEKEGR--YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 Y +E W +T G+ L+GG P +Q PLI + G+ A ET G Sbjct: 60 YRDTWAPMATDEVWQEVTRLSGGQPLTVSLSGGNPAIQNFAPLIAQGKEAGYRFACETQG 119 Query: 121 TIEPP--QGIDWICVSPK 136 +I P +D + +SPK Sbjct: 120 SISQPWFAALDTLVLSPK 137 >gi|124516513|gb|EAY58021.1| putative radical SAM family protein [Leptospirillum rubarum] gi|206603410|gb|EDZ39890.1| Putative radical activating enzyme [Leptospirillum sp. Group II '5-way CG'] Length = 212 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 24/141 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E F ++QGE ++G F R +GC L +CR+CDT + G + Sbjct: 3 ITETFRSIQGESRYSGWPCFFIRTTGCPL-----------RCRWCDTTYSFYGGEE---R 48 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124 VD L+ E +G +TGGEP +Q ++P L Q L G + +ET+G Sbjct: 49 TVDS---LVGEAVSSGTS---LVEITGGEPFVQPELPELCQKLLDLGKTVLIETSGGFPV 102 Query: 125 PQGIDWICVSPKAGCDLKIKG 145 P G++ C + DLK G Sbjct: 103 PSGLNREC---RLIVDLKPPG 120 >gi|322388780|ref|ZP_08062377.1| ExsD protein [Streptococcus infantis ATCC 700779] gi|321140399|gb|EFX35907.1| ExsD protein [Streptococcus infantis ATCC 700779] Length = 238 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T QGEG G+ +F R +GC+ C +CD+ F K R Sbjct: 11 VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122 D+ +I E G + Y L+GG P +L ++ L+ L +RG +AVET G+ Sbjct: 60 MTADE---VIAELDKLGSYD--YVTLSGGNPAILAANMAQLVTKLKERGITLAVETQGSR 114 Query: 123 EPP--QGIDWICVSPK 136 + ID + +SPK Sbjct: 115 WQNWLKDIDQVTLSPK 130 >gi|291279399|ref|YP_003496234.1| hypothetical protein DEFDS_1008 [Deferribacter desulfuricans SSM1] gi|290754101|dbj|BAI80478.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 231 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 90/239 (37%), Gaps = 46/239 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD------FVGIQG 59 +KEIF ++QGEG + G +F RF+GCN+ C CDT+ F+ Sbjct: 6 VKEIFKSVQGEGKYVGARQLFIRFAGCNI-----------NCVGCDTNYTVDRYFLCCDK 54 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117 D L +L+ + LTGGEPL+ D +Q L G +E Sbjct: 55 KYENPVTPDNLFNLVVNNFDLNLFHS--VSLTGGEPLIYCDFLKLFLQYLKNAGVRTFLE 112 Query: 118 TNGTI-----EPPQGIDWICVSPKA----GCDLKIKGGQELKLVFPQVNV---------- 158 T+G I E +D I V K G + G +LK + +V Sbjct: 113 TSGLIVDSILELEDYLDIISVDLKLKEVFGVEFNRDGIIKLKDINEKVYFKIVVGENLPL 172 Query: 159 -SPENYI----GFDFERFSLQPMDGPFLEENTNLAISYC-FQNPKWRLSVQTHKFIGIR 211 EN I G E + +D F + + C + N Q HK IG++ Sbjct: 173 EKIENTIHLIKGIGVEELYIHFIDNKFNYSLLDKILDLCYYHNVMAYFIPQVHKLIGMK 231 >gi|110596862|ref|ZP_01385152.1| Radical SAM [Chlorobium ferrooxidans DSM 13031] gi|110341549|gb|EAT60009.1| Radical SAM [Chlorobium ferrooxidans DSM 13031] Length = 224 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 22/118 (18%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +I EIF ++QGE +AG F R +GC CR CDT + G + Sbjct: 7 NISEIFHSIQGESSYAGWPCTFIRLAGC-----------GHGCRHCDTAYAEHPGRE--- 52 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFE-IAVETNG 120 N++++ + + E +TGGEPLLQ +V PL++ L R E + +ET G Sbjct: 53 MNIEEIIERVVEL------GAPLVEITGGEPLLQEEVYPLMEKLCNRWKERVLLETGG 104 >gi|270293087|ref|ZP_06199298.1| ExsD protein [Streptococcus sp. M143] gi|270279066|gb|EFA24912.1| ExsD protein [Streptococcus sp. M143] Length = 238 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T QGEG G+ +F R +GC+ C +CD+ F K R Sbjct: 11 VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122 D++ +++ G + Y L+GG P +L ++ L+ L +RG +AVET G+ Sbjct: 60 MTADEVIAALDK---LGSYD--YVTLSGGNPAILAANMAQLVTKLKERGVTLAVETQGSR 114 Query: 123 EPP--QGIDWICVSPK 136 + ID + +SPK Sbjct: 115 WQNWLKDIDQVTLSPK 130 >gi|307705450|ref|ZP_07642305.1| pyruvate-formate lyase-activating enzyme [Streptococcus mitis SK597] gi|307620985|gb|EFO00067.1| pyruvate-formate lyase-activating enzyme [Streptococcus mitis SK597] Length = 238 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T QGEG G+ +F R +GC+ C +CD+ F K R Sbjct: 11 VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122 D++ +++ G + Y L+GG P +L ++ L+ L +RG +AVET G+ Sbjct: 60 MTADEVIAALDK---LGSYD--YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQGSR 114 Query: 123 EPP--QGIDWICVSPK 136 + ID + +SPK Sbjct: 115 WQNWLKDIDQVTLSPK 130 >gi|241206476|ref|YP_002977572.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860366|gb|ACS58033.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 242 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 61/147 (41%), Gaps = 41/147 (27%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G VF R GC+ +C +CD+ Sbjct: 8 VSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDS-----------L 45 Query: 65 YNVDQLADLIEEQWITGEKEGRY-------------CVLTGGEPLLQVDVPLIQALNKRG 111 + VD QWI E + L+GG P +Q PLI+ + RG Sbjct: 46 HAVDSA---FRNQWIPMSTEAVWHKVTELSGGKPLTVSLSGGNPAIQPLRPLIELGHSRG 102 Query: 112 FEIAVETNGTIEPP--QGIDWICVSPK 136 + A+ET G+I + +D + VSPK Sbjct: 103 YRFALETQGSIAQSWFRDLDVLVVSPK 129 >gi|331265893|ref|YP_004325523.1| hypothetical protein SOR_0520 [Streptococcus oralis Uo5] gi|326682565|emb|CBZ00182.1| conserved hypothetical protein [Streptococcus oralis Uo5] Length = 238 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T QGEG G+ +F R +GC+ C +CD+ F K R Sbjct: 11 VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122 D++ +++ G + Y L+GG P +L ++ L+ L +RG +AVET G+ Sbjct: 60 MTADEVIAALDK---LGSYD--YVTLSGGNPAILAANMAQLVTKLKERGVTLAVETQGSR 114 Query: 123 EPP--QGIDWICVSPK 136 + ID + +SPK Sbjct: 115 WQNWLKDIDQVTLSPK 130 >gi|162450849|ref|YP_001613216.1| radical activating enzyme [Sorangium cellulosum 'So ce 56'] gi|161161431|emb|CAN92736.1| radical activating enzyme [Sorangium cellulosum 'So ce 56'] Length = 217 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 21/116 (18%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EI+ ++QGE AG F R +GCNL +C +CDT Q GG+ Sbjct: 8 VHEIYASVQGESTFAGLPCTFVRLTGCNL-----------RCAWCDTS----QAFYGGKR 52 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNG 120 + +++E G LTGGEPLLQ PL+ L G + VET+G Sbjct: 53 I--RRGEVLERALALGTP---LVELTGGEPLLQPGSFPLLAELCDAGRTVLVETSG 103 >gi|307709658|ref|ZP_07646110.1| pyruvate-formate lyase-activating enzyme [Streptococcus mitis SK564] gi|307619556|gb|EFN98680.1| pyruvate-formate lyase-activating enzyme [Streptococcus mitis SK564] Length = 238 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T QGEG G+ +F R +GC+ C +CD+ F K R Sbjct: 11 VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122 D++ +++ G + Y L+GG P +L ++ L+ L +RG +AVET G+ Sbjct: 60 MTADEVIAALDK---LGSYD--YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQGSR 114 Query: 123 EPP--QGIDWICVSPK 136 + ID + +SPK Sbjct: 115 WQNWLKDIDQVTLSPK 130 >gi|307707096|ref|ZP_07643893.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus mitis SK321] gi|307617622|gb|EFN96792.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus mitis SK321] Length = 238 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T QGEG G+ +F R +GC+ C +CD+ F K R Sbjct: 11 VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122 D++ +++ G + Y L+GG P +L ++ L+ L +RG +AVET G+ Sbjct: 60 MTADEVIAALDK---LGSYD--YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQGSR 114 Query: 123 EPP--QGIDWICVSPK 136 + ID + +SPK Sbjct: 115 WQNWLKDIDQVTLSPK 130 >gi|293365938|ref|ZP_06612641.1| ExsD protein [Streptococcus oralis ATCC 35037] gi|307702341|ref|ZP_07639299.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus oralis ATCC 35037] gi|322375722|ref|ZP_08050234.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Streptococcus sp. C300] gi|291315616|gb|EFE56066.1| ExsD protein [Streptococcus oralis ATCC 35037] gi|307624144|gb|EFO03123.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus oralis ATCC 35037] gi|321279430|gb|EFX56471.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Streptococcus sp. C300] Length = 238 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T QGEG G+ +F R +GC+ C +CD+ F K R Sbjct: 11 VLEIFGPTFQGEGRAIGQKTMFVRTTGCDY-----------HCDWCDSAFTWDGSEKPTR 59 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122 D++ +++ G + Y L+GG P +L ++ L+ L +RG +AVET G+ Sbjct: 60 MTADEVIAALDK---LGSYD--YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQGSR 114 Query: 123 EPP--QGIDWICVSPK 136 + ID + +SPK Sbjct: 115 WQNWLKDIDQVTLSPK 130 >gi|167461680|ref|ZP_02326769.1| Radical SAM domain protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 245 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 16/135 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G+ +F R +GC+ +C +CD+ F G+ + Sbjct: 6 VLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCSWCDSSFTW-DGSGKDQ 53 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI- 122 + D++EE G K + ++GG P+L + L+ L +G A+ET G+ Sbjct: 54 IRMLSPEDIVEELKRLGGKRFSHVTISGGNPVLLSQMGKLVSLLQSQGIRTAIETQGSKW 113 Query: 123 -EPPQGIDWICVSPK 136 + +D + +SPK Sbjct: 114 QDWLLAVDDVTLSPK 128 >gi|163738317|ref|ZP_02145732.1| Radical SAM [Phaeobacter gallaeciensis BS107] gi|161388238|gb|EDQ12592.1| Radical SAM [Phaeobacter gallaeciensis BS107] Length = 265 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 60/138 (43%), Gaps = 23/138 (16%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ R Sbjct: 35 IAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDS-----LHAVDSR 78 Query: 65 YNVDQLADLIEEQW--ITGEKEGR--YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 Y + +E W +T G+ L+GG P +Q PLI + G+ A ET G Sbjct: 79 YRDTWVPMATDEVWQEVTRLSGGQPLTVSLSGGNPAIQNFAPLIAQGKEAGYRFACETQG 138 Query: 121 TIEPP--QGIDWICVSPK 136 +I P +D + +SPK Sbjct: 139 SISQPWFAQLDTLVLSPK 156 >gi|322377478|ref|ZP_08051969.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Streptococcus sp. M334] gi|321281678|gb|EFX58687.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Streptococcus sp. M334] Length = 238 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T QGEG G+ +F R +GC+ C +CD+ F K R Sbjct: 11 VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122 D++ +++ G + Y L+GG P +L ++ L+ L +RG +AVET G+ Sbjct: 60 MTADEVIAALDK---LGSYD--YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQGSR 114 Query: 123 EPP--QGIDWICVSPK 136 + ID + +SPK Sbjct: 115 WQNWLKDIDQVTLSPK 130 >gi|307707501|ref|ZP_07643983.1| coenzyme PQQ synthesis [Streptococcus mitis NCTC 12261] gi|307616453|gb|EFN95644.1| coenzyme PQQ synthesis [Streptococcus mitis NCTC 12261] Length = 238 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T QGEG G+ +F R +GC+ C +CD+ F K R Sbjct: 11 VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122 D++ +++ G + Y L+GG P +L ++ L+ L +RG +AVET G+ Sbjct: 60 MTADEVIAALDK---LGNYD--YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQGSR 114 Query: 123 EPP--QGIDWICVSPK 136 + ID + +SPK Sbjct: 115 WQNWLKDIDQVTLSPK 130 >gi|322383448|ref|ZP_08057228.1| queuosine biosynthesis enzyme-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152249|gb|EFX45075.1| queuosine biosynthesis enzyme-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 240 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 16/133 (12%) Query: 8 EIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66 EIF T+QGEG G+ +F R +GC+ +C +CD+ F G+ + Sbjct: 3 EIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCSWCDSSFTW-DGSGKDQIR 50 Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI--E 123 + D++EE G K + ++GG P+L + L+ L +G A+ET G+ + Sbjct: 51 MLSPEDIVEELKRLGGKRFSHVTISGGNPVLLSQMGKLVSLLQSQGIRTAIETQGSKWQD 110 Query: 124 PPQGIDWICVSPK 136 +D + +SPK Sbjct: 111 WLLAVDDVTLSPK 123 >gi|315613640|ref|ZP_07888547.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus sanguinis ATCC 49296] gi|315314331|gb|EFU62376.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus sanguinis ATCC 49296] Length = 238 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T QGEG G+ +F R +GC+ C +CD+ F K R Sbjct: 11 VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122 D++ +++ G + Y L+GG P +L ++ L+ L +RG +AVET G+ Sbjct: 60 MTADEVIAALDK---LGSYD--YVTLSGGNPAILAANMAQLVTKLKERGVTLAVETQGSR 114 Query: 123 EPP--QGIDWICVSPK 136 + ID + +SPK Sbjct: 115 WQNWLKDIDQVTLSPK 130 >gi|306824721|ref|ZP_07458065.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432932|gb|EFM35904.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 238 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T QGEG G+ +F R +GC+ C +CD+ F K R Sbjct: 11 VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122 D+ +I E G + Y L+GG P +L ++ L+ L +RG +AVET G+ Sbjct: 60 MTADE---VIAELDKLGSYD--YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQGSR 114 Query: 123 EPP--QGIDWICVSPK 136 + ID + +SPK Sbjct: 115 WQNWLKDIDQVTLSPK 130 >gi|194014564|ref|ZP_03053181.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus pumilus ATCC 7061] gi|194013590|gb|EDW23155.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus pumilus ATCC 7061] Length = 243 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 20/141 (14%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 K + EIF T+QGEG G+ +F R +GC+ C +CD+ F Sbjct: 3 KAIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW---N 48 Query: 61 KGGRYNVDQLA--DLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVE 117 ++++ L D+++E G + + ++GG P LL+ LI L++ G + A+E Sbjct: 49 GSAKHDIQWLHAEDIVKELKRIGGQAFSHVTISGGNPALLKQMESLIDLLHEEGIDTALE 108 Query: 118 TNGTIEPP--QGIDWICVSPK 136 T GT+ ID + +SPK Sbjct: 109 TQGTMYQDWFLKIDDLTISPK 129 >gi|320108730|ref|YP_004184320.1| Radical SAM domain-containing protein [Terriglobus saanensis SP1PR4] gi|319927251|gb|ADV84326.1| Radical SAM domain protein [Terriglobus saanensis SP1PR4] Length = 229 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 23/117 (19%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 E++ ++QGE G +F R +GCNL +C +CD+++ GT + Sbjct: 5 ELYKSVQGESSFTGMPCIFVRSAGCNL-----------RCAWCDSEYTFSGGTP---FTE 50 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQAL--NKRGFEIAVETNG 120 D++ IE R TGGEP+L +PL++ L + RG+ + +ET+G Sbjct: 51 DEIVAQIE-----ALAPCRLIEFTGGEPMLHAKELLPLMRRLLADPRGYTLMMETSG 102 >gi|251798291|ref|YP_003013022.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Paenibacillus sp. JDR-2] gi|247545917|gb|ACT02936.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Paenibacillus sp. JDR-2] Length = 242 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 16/139 (11%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 K + EIF T+QGEG G+ +F R +GC+ C +CD+ F GT Sbjct: 4 KRIPVMEIFGPTVQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFT-WDGT 51 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119 + ++++ E G + L+GG P LL+ L+ AL++ G +AVET Sbjct: 52 GKDDTRMLTASEIVGELRELGGNTFSHVTLSGGNPALLKNADELVDALHRDGVRVAVETQ 111 Query: 120 GTI--EPPQGIDWICVSPK 136 G+ + ID + +SPK Sbjct: 112 GSRWQDWLLAIDELTLSPK 130 >gi|91773249|ref|YP_565941.1| radical SAM family Fe-S protein [Methanococcoides burtonii DSM 6242] gi|91712264|gb|ABE52191.1| Fe-S protein, radical SAM family [Methanococcoides burtonii DSM 6242] Length = 238 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 44/105 (41%), Gaps = 23/105 (21%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-----FVGIQGT 60 I EIF ++QGEG H G F RF GCNL C +CDT+ + T Sbjct: 5 ISEIFCSVQGEGPHVGVRQAFVRFIGCNL-----------NCSYCDTEPADPSVCMFERT 53 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRY-----CVLTGGEPLLQVD 100 G + L+ Q E G Y LTGGEPLL D Sbjct: 54 PGSNSFENIPNPLVTSQ--VSELLGNYGNIHSVSLTGGEPLLHAD 96 >gi|254469727|ref|ZP_05083132.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Pseudovibrio sp. JE062] gi|211961562|gb|EEA96757.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Pseudovibrio sp. JE062] Length = 246 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 25/144 (17%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M SI EIF T+QGEG G VF R GC+ +C +CDT + Sbjct: 7 MSKLSISEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDT----LHA 51 Query: 60 TKGG-RYNVDQLADLIEEQWITGEK----EGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114 R+ DQ+ E+ W E+ + L+GG P +Q LI +G++ Sbjct: 52 VDSAYRHTWDQMDS--EDVWKKVEELSCGQPITVSLSGGNPAIQDFSKLIALGKAKGYKF 109 Query: 115 AVETNGTIEPP--QGIDWICVSPK 136 A+ET G++ +D + +SPK Sbjct: 110 AIETQGSVARDWFADLDTLVLSPK 133 >gi|51244018|ref|YP_063902.1| hypothetical protein DP0166 [Desulfotalea psychrophila LSv54] gi|50875055|emb|CAG34895.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 212 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 22/126 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + EIF ++QGEG GR A F R SGC + C +CDT G Sbjct: 5 ILDVHEIFTSIQGEGPLMGRPASFLRLSGC----------VEPLCPWCDTKQA---WGPG 51 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIAVETN 119 +V+++A + R C++TGGEP LQ + L + L G EI ET+ Sbjct: 52 KTISVEEVASRLIAL------GNRLCIITGGEPFLQWESGLNLLERLLLTEGIEIQYETS 105 Query: 120 GTIEPP 125 G + P Sbjct: 106 GKVLIP 111 >gi|304437068|ref|ZP_07397031.1| radical SAM domain protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370019|gb|EFM23681.1| radical SAM domain protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 248 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 64/154 (41%), Gaps = 30/154 (19%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-FVGIQGT--- 60 +I EIF T+QGEG + G VF R GCNL C +CDT+ VG+ Sbjct: 9 NIIEIFSTVQGEGKYVGCRQVFLRLEGCNL-----------HCSYCDTNSAVGMHPDCVV 57 Query: 61 --KGGRYNVDQLADLIEEQWITGEKE-------GRYCVLTGGEPLLQVDVPLIQALNKR- 110 G Y++ + I Q E + +TGGEPLL I AL Sbjct: 58 EEGAGTYHLVPYPNPISPQRAAELVEIAAAGVPHQALNITGGEPLLHAA--FIHALAPHV 115 Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144 I +E+NGT+ CV AG + IK Sbjct: 116 HLPIYLESNGTLHEELK---KCVDCVAGISMDIK 146 >gi|222150713|ref|YP_002559866.1| hypothetical protein MCCL_0463 [Macrococcus caseolyticus JCSC5402] gi|222119835|dbj|BAH17170.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 236 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 16/156 (10%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG GR +F R +GC+ C +CD+ F GT Sbjct: 5 VLEIFGPTIQGEGAVIGRKTMFVRTAGCDF-----------SCAWCDSKFTW-DGTMKDE 52 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 + + E + + ++GG P L ++ + L +G E+A+ET GT Sbjct: 53 IEMLLPETIYERLQSIAPNQFNHVTISGGNPALIKNLAGFVSLLQDKGIEVALETQGTKF 112 Query: 124 PP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 ID + +SPK +L V +++ Sbjct: 113 QSWMTEIDQLTISPKPPSSTMTHDLDQLDAVLHELD 148 >gi|312865269|ref|ZP_07725497.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Streptococcus downei F0415] gi|311099380|gb|EFQ57596.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Streptococcus downei F0415] Length = 242 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 59/136 (43%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T QGEG G+ +F R GC+ C +CD+ F K Sbjct: 15 ILEIFGPTFQGEGRAIGQKTMFIRTGGCDY-----------HCDWCDSAFTWDGSEKATP 63 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 DQ +I E G + Y L+GG P LQ L+ L RG +AVET G+ Sbjct: 64 MTSDQ---VIAELDKLGTYD--YVTLSGGNPCLQAANMEELVHKLKSRGVTLAVETQGSR 118 Query: 123 --EPPQGIDWICVSPK 136 + ID + +SPK Sbjct: 119 WQDWLLDIDQVTLSPK 134 >gi|322418702|ref|YP_004197925.1| Radical SAM domain-containing protein [Geobacter sp. M18] gi|320125089|gb|ADW12649.1| Radical SAM domain protein [Geobacter sp. M18] Length = 250 Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 37/138 (26%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-------DFVGIQ 58 + E F ++QGEG G VF RFSGCNL C FCDT D ++ Sbjct: 8 LVECFSSIQGEGVLVGLRQVFLRFSGCNL-----------NCSFCDTPGMTAVPDECLLE 56 Query: 59 GTKGGR--------YNVDQLADLIEEQWITGEKEGRYCV-LTGGEP-----LLQVDVPLI 104 T G R ++++A LI E W + + +TGGEP LL+ +P++ Sbjct: 57 LTPGRRDFFKVPNPVTLERVATLI-ESWTAAWPGIHHSISVTGGEPLLFGTLLEEWLPVL 115 Query: 105 QALNKRGFEIAVETNGTI 122 ++ I +ETNGT+ Sbjct: 116 ----RKFLPIYLETNGTL 129 >gi|269798253|ref|YP_003312153.1| radical SAM protein [Veillonella parvula DSM 2008] gi|269094882|gb|ACZ24873.1| Radical SAM domain protein [Veillonella parvula DSM 2008] Length = 247 Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 19/111 (17%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 ++ EIF ++ GEG G + F R CN+ +C +CDT + + Sbjct: 2 NVIEIFASIDGEGSRQGLLTTFLRLHDCNI-----------RCSYCDTTYSYGIDSVFTE 50 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFE 113 ++A++IE +TGGEPLLQ V LI LN+R E Sbjct: 51 MTAAEVANVIESLG------NHRITITGGEPLLQEAAVVELIDELNRRKAE 95 >gi|326774406|ref|ZP_08233671.1| Radical SAM domain protein [Streptomyces cf. griseus XylebKG-1] gi|326654739|gb|EGE39585.1| Radical SAM domain protein [Streptomyces cf. griseus XylebKG-1] Length = 244 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 54/125 (43%), Gaps = 24/125 (19%) Query: 6 IKEIFLTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 ++EIF + QGEG GR A F RF CNL C CD+ R Sbjct: 17 VQEIFGPVPQGEGPFMGRRACFVRFGRCNL-----------HCPPCDSKAT----WDSSR 61 Query: 65 YNVDQ------LADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVE 117 Y++ Q + D+ + G G VLTGGEPL+ Q Q L EI VE Sbjct: 62 YDLRQTCPPRTVEDIAQTAAAHGAGSG-ITVLTGGEPLMWQRSTAWAQLLQDLPGEIHVE 120 Query: 118 TNGTI 122 TN TI Sbjct: 121 TNATI 125 >gi|289192393|ref|YP_003458334.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22] gi|288938843|gb|ADC69598.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22] Length = 243 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 32/152 (21%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD----FVGIQGTK 61 I+EIF ++ GEG + GR +F RF+GC L C +CD + F ++ T Sbjct: 2 IREIFSSIMGEGKYIGRRFIFVRFAGCPL-----------NCVYCDEESKGYFNRVEKTP 50 Query: 62 G-GRYNVDQLADLIEEQWITGEKEGRY-----CVLTGGEPLL---QVDVPLIQALNKRGF 112 G G + Q D+ E I + + TGGEPLL Q+ + L +G+ Sbjct: 51 GSGEFETLQKIDI--EDIINAIDKLKTPDLFAVSFTGGEPLLYHKQIK-EISDILKDKGY 107 Query: 113 EIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144 +E+NG P+ + + + A D+K+K Sbjct: 108 RTFLESNGMF--PEKVFYFDI---ASIDIKLK 134 >gi|254446154|ref|ZP_05059630.1| radical SAM domain protein, putative [Verrucomicrobiae bacterium DG1235] gi|198260462|gb|EDY84770.1| radical SAM domain protein, putative [Verrucomicrobiae bacterium DG1235] Length = 208 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 18/118 (15%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 GR A F R GC + C +CD+ GT Y + + E Sbjct: 2 GRSAYFIRLFGCPV-----------HCPWCDS-----AGTWHPDYVPKNVERVTPEALAD 45 Query: 81 GEKE--GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPK 136 K + V+TGGEP++ L +AL RG +ET+G E DWI +SPK Sbjct: 46 AAKASGAEFAVVTGGEPVIHDLKALSEALAARGIGRHLETSGGFEIRGDFDWITLSPK 103 >gi|256810231|ref|YP_003127600.1| Radical SAM domain protein [Methanocaldococcus fervens AG86] gi|256793431|gb|ACV24100.1| Radical SAM domain protein [Methanocaldococcus fervens AG86] Length = 243 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 26/149 (17%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---FVGIQGTKG 62 IKEIF ++ GEG + GR +F RF+GC L +C +CD + ++ Sbjct: 2 IKEIFSSIMGEGKYIGRRFIFVRFAGCPL-----------KCIYCDEESKSYLNRVEKIP 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRY-----CVLTGGEPLLQVD--VPLIQALNKRGFEIA 115 G + L ++ E + + R TGGEPLL + + L +G+ Sbjct: 51 GSGEFETLKNMDVEDVVNAVDKLRTPDLFAVSFTGGEPLLYSKKIKEIAEILKDKGYRTF 110 Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIK 144 +E+NG P+ + + + A D+K+K Sbjct: 111 LESNGLF--PEKVFYFDI---ASIDIKLK 134 >gi|289167418|ref|YP_003445687.1| hypothetical protein smi_0570 [Streptococcus mitis B6] gi|288906985|emb|CBJ21819.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 238 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 21/136 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T QGEG G+ +F R +GC+ C +CD+ F K R Sbjct: 11 VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPIR 59 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122 D++ +++ G + Y L+GG P +L ++ L+ L +RG +AVET G+ Sbjct: 60 MTADEVIAALDK---LGSYD--YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQGSR 114 Query: 123 EPP--QGIDWICVSPK 136 + ID + +SPK Sbjct: 115 WQNWLKDIDQVTLSPK 130 >gi|239826407|ref|YP_002949031.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. WCH70] gi|239806700|gb|ACS23765.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. WCH70] Length = 245 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 20/141 (14%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV--GIQ 58 K + EIF T+QGEG G+ +F R +GC+ +CR+CD+ F G Sbjct: 5 KKIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSAFTWDGSA 53 Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVE 117 + + +Q+ + + E G + ++GG P L+Q L+ L +G IAVE Sbjct: 54 KEEIRQMTAEQIWERLYE---LGGDRFSHVTISGGNPVLIQALEELVVLLKNKGIRIAVE 110 Query: 118 TNGTI--EPPQGIDWICVSPK 136 T G+ + ID I +SPK Sbjct: 111 TQGSRWQDWLYHIDDITISPK 131 >gi|320546946|ref|ZP_08041247.1| ExsD protein [Streptococcus equinus ATCC 9812] gi|320448348|gb|EFW89090.1| ExsD protein [Streptococcus equinus ATCC 9812] Length = 237 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 21/156 (13%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T QGEG G+ +F R GC+ C +CD+DF K R Sbjct: 10 VLEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCAWCDSDFTWNGSEKPNR 58 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDV-PLIQALNKRGFEIAVETNGTI 122 D+ +I E G + Y L+GG P LL + L+ L RG + +ET G+ Sbjct: 59 MTADE---IIAELDRLGTYD--YVTLSGGNPCLLGASMGELVTKLKARGVTLGIETQGSR 113 Query: 123 EPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156 + ID + +SPK + L + Q+ Sbjct: 114 WQTWLKDIDQVTLSPKPPSSKMTVNFETLDFIVSQL 149 >gi|172058910|ref|YP_001815370.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Exiguobacterium sibiricum 255-15] gi|171991431|gb|ACB62353.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Exiguobacterium sibiricum 255-15] Length = 238 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 18/118 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T QGEG G+ +F R GC+ C +CD+ F K Sbjct: 12 VLEIFGPTFQGEGRSIGQKTMFVRTGGCDY-----------SCAWCDSAFTWDGSEKPDL 60 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 D++ ++ G + ++GG PLL + L+ AL RG ++VET G+ Sbjct: 61 LTADEILAQLDALGSYG-----HVTISGGNPLLHASIGTLVDALKSRGITMSVETQGS 113 >gi|240103382|ref|YP_002959691.1| Radical SAM protein [Thermococcus gammatolerans EJ3] gi|239910936|gb|ACS33827.1| Radical SAM protein [Thermococcus gammatolerans EJ3] Length = 253 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 36/164 (21%) Query: 1 MKLYSIKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DF 54 MKL + E+F + QGEGG GR +F RF+GC+L C +CD+ ++ Sbjct: 1 MKLI-MAEVFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------NCAWCDSREY 48 Query: 55 VGIQGTKGGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100 + RY V+ +L D+++ + TGGEP LQV Sbjct: 49 IDPSRVSRWRYEVEPFTAKFEYKPNPAELEDVVDAVLRLDTGDIHSISYTGGEPTLQVKP 108 Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDWIC-VSPKAGCDLK 142 L++ + GF+ +ET+G + P+ I+ + ++ A D+K Sbjct: 109 LKALMERMKSLGFDNFLETHGGL--PELIEEVAPLTDYASVDIK 150 >gi|332179391|gb|AEE15080.1| Radical SAM domain protein [Thermodesulfobium narugense DSM 14796] Length = 216 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 26/134 (19%) Query: 3 LYSIKEIFLTLQGEGGHA--GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQG 59 + +I IF ++ GE G G R GCNL +CR+CDT D I+ Sbjct: 1 MIAIHSIFESISGEVGFMPQGSWCTIVRLQGCNL-----------RCRWCDTKDSQSIEA 49 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118 ++D++ D + + ++TGGEPL+Q + + LI L +R + +ET Sbjct: 50 KY--MLSIDEVIDRCKNHKV---------LITGGEPLIQEETLKLIDRLIERHHFVQIET 98 Query: 119 NGTIEPPQGIDWIC 132 NG+I P G C Sbjct: 99 NGSIFLPSGYSSDC 112 >gi|306842891|ref|ZP_07475527.1| Radical SAM domain protein [Brucella sp. BO2] gi|306286914|gb|EFM58434.1| Radical SAM domain protein [Brucella sp. BO2] Length = 248 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 14 ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 61 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + + + E +K L+GG P +Q PLI+ G+ A+ET G++ Sbjct: 62 WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLAPLIEHGKAEGYRFALETQGSVAK 121 Query: 125 P--QGIDWICVSPK 136 +D + +SPK Sbjct: 122 DWFSRLDTLVLSPK 135 >gi|297584920|ref|YP_003700700.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus selenitireducens MLS10] gi|297143377|gb|ADI00135.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus selenitireducens MLS10] Length = 243 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 24/139 (17%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV--GIQGTKG 62 + EIF T+QGEG AGR +F R +GC+ C +CD+ F G + Sbjct: 7 VLEIFGPTIQGEGMVAGRKTMFVRTAGCDY-----------ACSWCDSAFTWDGSAKDEI 55 Query: 63 GRYNVDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119 + N D + + E E EG + ++GG P L ++ I L ++ ++A+ET Sbjct: 56 VQMNKDAIWQALNE-----EAEGLFSHVTISGGNPALLKNLGSFITLLKEKAIDVALETQ 110 Query: 120 GTI--EPPQGIDWICVSPK 136 G++ + ID + +SPK Sbjct: 111 GSVWQDWFTTIDDLTISPK 129 >gi|256823062|ref|YP_003147025.1| Radical SAM domain-containing protein [Kangiella koreensis DSM 16069] gi|256796601|gb|ACV27257.1| Radical SAM domain protein [Kangiella koreensis DSM 16069] Length = 213 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 21/122 (17%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M I EIF +LQGE G VF R +GC L +C +CDTD+ G Sbjct: 1 MSKLRITEIFHSLQGESLTVGVPTVFVRLTGCPL-----------RCVYCDTDY-AFGGG 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119 + R+ + LA++ + + +TGGEPL Q V + L G++++ ET Sbjct: 49 EWMRFE-EILAEI-------KQYGCEHVCITGGEPLAQKRVFEFFKLLGDEGYKVSTETG 100 Query: 120 GT 121 G Sbjct: 101 GA 102 >gi|75906966|ref|YP_321262.1| radical SAM family protein [Anabaena variabilis ATCC 29413] gi|75700691|gb|ABA20367.1| Radical SAM [Anabaena variabilis ATCC 29413] Length = 264 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 40/162 (24%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-------GIQ 58 + E+F +QGEG + G +F RF+ C+L +C FCD+ I+ Sbjct: 13 LVEVFSAIQGEGLNVGTRQIFIRFAFCDL-----------RCHFCDSAHTWNAPASCRIE 61 Query: 59 GTKGGR-----YNVDQLADLIEEQWITGEKEGRYCV-----LTGGEPLLQVD-----VPL 103 + G R N L LIE W+ E++ C+ LTGGEPLL +P Sbjct: 62 RSPGLRDFESHPNPVPLTTLIE--WV--ERQNLPCLHDSISLTGGEPLLHAPFLQEFLPK 117 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 +++L G I +ET G P Q + G DLK+ Sbjct: 118 VRSLT--GLPIYLETGGH-RPEQLATILPYLDSVGMDLKLPS 156 >gi|224372460|ref|YP_002606832.1| radical SAM domain protein [Nautilia profundicola AmH] gi|223589672|gb|ACM93408.1| radical SAM domain protein [Nautilia profundicola AmH] Length = 233 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 27/131 (20%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC-----RFCDTDFVG 56 KL + EIF ++QGEG +AG +VF R GCNL +C + CD+ + Sbjct: 5 KLIPVSEIFYSIQGEGKYAGHPSVFVRVGGCNL-----------KCPGFGEKGCDS-YYA 52 Query: 57 IQGTKGGRYNVDQLADLIEE--QWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGF 112 + + + + + ++ E ++I ++ + V+TGGEP L PL+ Sbjct: 53 VDKSYKSEWKLMSVEEIKSEVSKYI---RKDTHLVITGGEPTLFYKQLYPLVVWFEG--- 106 Query: 113 EIAVETNGTIE 123 +I VETN T++ Sbjct: 107 QITVETNTTVD 117 >gi|310640608|ref|YP_003945366.1| coenzyme pqq synthesis-like protein [Paenibacillus polymyxa SC2] gi|309245558|gb|ADO55125.1| Coenzyme PQQ synthesis-like protein [Paenibacillus polymyxa SC2] Length = 265 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 16/135 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + E+F T+QGEG GR +F R +GC+ C +CD+ F G+ + Sbjct: 29 VLEVFGPTVQGEGMVIGRKTMFVRTAGCDY-----------HCSWCDSAFTW-DGSAKDQ 76 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI- 122 D+ +E G + + L+GG P L + LI L +G AVET G+ Sbjct: 77 IRRLSATDIWQELKSIGGERFSHVTLSGGNPALLPQLGALITLLRSQGIATAVETQGSRW 136 Query: 123 -EPPQGIDWICVSPK 136 E ID + +SPK Sbjct: 137 QEWLYDIDEVTLSPK 151 >gi|238926278|ref|ZP_04658038.1| radical SAM domain protein [Selenomonas flueggei ATCC 43531] gi|238885958|gb|EEQ49596.1| radical SAM domain protein [Selenomonas flueggei ATCC 43531] Length = 248 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 70/174 (40%), Gaps = 46/174 (26%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK--- 61 +I EIF ++QGEG + G VF R GCNL C +CDTD GT Sbjct: 9 NIIEIFSSIQGEGKYVGCRQVFLRLEGCNL-----------NCTYCDTD--SKAGTHPNC 55 Query: 62 -----GGRYNVDQLADLIEEQWITGEK-------EGRYCVLTGGEPLLQVDVPLIQALNK 109 G Y++ + I + + +TGGEPLL I+AL Sbjct: 56 VVEEGAGTYHLVPYPNPISPERAAELVALAAAGVPHQALSITGGEPLLHAS--FIRALAP 113 Query: 110 R-GFEIAVETNGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP 160 I +ETNGT+ E + ID CV AG + IK P V P Sbjct: 114 HVHLPIYLETNGTLYAELKKCID--CV---AGISMDIK--------LPSVTAHP 154 >gi|17231653|ref|NP_488201.1| hypothetical protein alr4161 [Nostoc sp. PCC 7120] gi|17133296|dbj|BAB75860.1| alr4161 [Nostoc sp. PCC 7120] Length = 264 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 40/162 (24%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-------GIQ 58 + E+F +QGEG + G +F RF+ C+L +C FCD+ I+ Sbjct: 13 LVEVFSAIQGEGLNVGTRQIFIRFAFCDL-----------RCHFCDSAHTWNAPASCRIE 61 Query: 59 GTKGGR-----YNVDQLADLIEEQWITGEKEGRYCV-----LTGGEPLLQVD-----VPL 103 + G R N L LIE W+ E++ C+ LTGGEPLL +P Sbjct: 62 RSPGLRDFESHPNPVPLTTLIE--WV--ERQNLPCLHDSISLTGGEPLLHAPFLQEFLPK 117 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 +++L G I +ET G P Q + G DLK+ Sbjct: 118 VRSLT--GLPIYLETGGH-RPEQLATILPYLDSVGMDLKLPS 156 >gi|239832976|ref|ZP_04681305.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Ochrobactrum intermedium LMG 3301] gi|239825243|gb|EEQ96811.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Ochrobactrum intermedium LMG 3301] Length = 246 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 19/136 (13%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 12 IAEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 59 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + + + +E + L+GG P +Q PLI+ K G+ A+ET G++ Sbjct: 60 WKTMSVEAIWDEVTALSRNKPLTVSLSGGNPAIQPLGPLIEHGRKHGYRFALETQGSVV- 118 Query: 125 PQG----IDWICVSPK 136 QG +D + +SPK Sbjct: 119 -QGWFSALDTLVLSPK 133 >gi|57641133|ref|YP_183611.1| organic radical activating protein [Thermococcus kodakarensis KOD1] gi|57159457|dbj|BAD85387.1| organic radical activating enzyme, radical SAM superfamily [Thermococcus kodakarensis KOD1] Length = 253 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 33/158 (20%) Query: 6 IKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQG 59 + E+F + QGEGG GR +F RF+GC+L C +CD+ +++ Sbjct: 5 MAEVFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------HCAWCDSREYIDASR 53 Query: 60 TKGGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLI 104 RY V + +++E + TGGEP LQV + L+ Sbjct: 54 VSSWRYEVKPFTGRFEYRPNPASVEEVVEAVLRLDTGDIHSISYTGGEPTLQVKPLMALM 113 Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 + + + GF+ +ET+G + P D ++ A D+K Sbjct: 114 ERMKELGFDNFLETHGGL-PELIRDVAPLTDYASVDIK 150 >gi|288556797|ref|YP_003428732.1| hypothetical protein BpOF4_19005 [Bacillus pseudofirmus OF4] gi|288547957|gb|ADC51840.1| hypothetical protein BpOF4_19005 [Bacillus pseudofirmus OF4] Length = 236 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 18/140 (12%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 MK + EIF T+QGEG G+ +F R GC+ +C +CD+ F G Sbjct: 1 MKKIPVMEIFGPTIQGEGMVIGQKTMFVRTGGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118 T G+ N+ ++I++ G + ++GG P + + L+ L G + AVET Sbjct: 49 T--GKSNLMTAEEIIKQLKEIGGDRFSHVTISGGNPAIHQGIGKLVSFLKSLGIKTAVET 106 Query: 119 NGTI--EPPQGIDWICVSPK 136 G++ E + + +SPK Sbjct: 107 QGSLWQEWMMEVSDVTISPK 126 >gi|282163368|ref|YP_003355753.1| hypothetical protein MCP_0698 [Methanocella paludicola SANAE] gi|282155682|dbj|BAI60770.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 243 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 25/131 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT--DFVGIQG---- 59 I+EIF++ QGEG + G +F RF CNL +C++CDT D+ Sbjct: 5 IREIFVSAQGEGPYVGYRQLFVRFPKCNL-----------ECQYCDTPKDWSSESKCRVE 53 Query: 60 TKGGRYNVDQLADLIEEQWITGEK--EGRYCV-LTGGEPLLQVDVPLIQALNKRGFEIAV 116 +K G + V+ E ++ K E + V LTGGEPLL I+ L F + + Sbjct: 54 SKPGEF-VEYDNPFSSEHLLSVIKLYERIHSVSLTGGEPLLYAK--FIKELKTSKFPLYL 110 Query: 117 ETNGTIEPPQG 127 E+N T+ P+G Sbjct: 111 ESNMTL--PEG 119 >gi|308067859|ref|YP_003869464.1| Organic radical activating enzyme [Paenibacillus polymyxa E681] gi|305857138|gb|ADM68926.1| Organic radical activating enzyme [Paenibacillus polymyxa E681] Length = 287 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 16/135 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + E+F T+QGEG GR +F R +GC+ C +CD+ F G+ + Sbjct: 24 VLEVFGPTVQGEGMVIGRKTMFVRTAGCDY-----------HCSWCDSAFTW-DGSAKDQ 71 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI- 122 D+ +E G + + L+GG P L + LI L +G AVET G+ Sbjct: 72 IRRLSATDIWQELKAIGGERFSHVTLSGGNPALLPQLGELITLLRSQGIATAVETQGSRW 131 Query: 123 -EPPQGIDWICVSPK 136 E ID + +SPK Sbjct: 132 QEWLYDIDEVTLSPK 146 >gi|327400839|ref|YP_004341678.1| Radical SAM domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316347|gb|AEA46963.1| Radical SAM domain protein [Archaeoglobus veneficus SNP6] Length = 238 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 102/250 (40%), Gaps = 71/250 (28%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I+EIF ++QGEG G +F RF+ CNL C +CDT T Sbjct: 14 IREIFESIQGEGILVGVRQLFVRFARCNL-----------NCIYCDTPTDSTDCT--NHI 60 Query: 66 NVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQVDVPLIQALNK-RGFEIAVETNGTI 122 ++L + + ++++ ++ LTGGEPLL D I +L K R F +ETN ++ Sbjct: 61 TGEKLPNPVSREYVSEFFDRNVHSICLTGGEPLLYAD--FIASLPKTRPF--YLETNMSL 116 Query: 123 EPPQGIDWICVSPKAGCDLKIK-----GGQEL---------------------KLVFPQ- 155 P V AG D K++ G +EL K V P+ Sbjct: 117 -PEMAKKLTHVDFVAG-DFKVREAIVDGYEELVENTVRCFRILRNREDRLTFCKFVLPER 174 Query: 156 ------VN--VSPENYIGFDFERFSLQPMDG-------PFLEENTNLAISYCFQNPKWRL 200 +N +S ENY+ E F LQP+ G LE L C R+ Sbjct: 175 FDAEEVINNAISVENYV----ECFILQPVFGTSKRGIETILELQKVLMEKVCVD---VRV 227 Query: 201 SVQTHKFIGI 210 Q HK++G+ Sbjct: 228 IPQVHKYLGV 237 >gi|229917714|ref|YP_002886360.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Exiguobacterium sp. AT1b] gi|229469143|gb|ACQ70915.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Exiguobacterium sp. AT1b] Length = 236 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 20/135 (14%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + E+F T QGEG G+ +F R +GC+ +C +CD+ F K Sbjct: 10 VLEVFGPTFQGEGRAIGQKTMFVRTAGCDY-----------RCSWCDSAFTWDGSEKPDM 58 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI- 122 D++ ++ + Y ++GG PLL + L+ L KRG +AVET G+ Sbjct: 59 LTADEVIARLDALGMYD-----YVTISGGNPLLIAAMEDLVVKLKKRGVTLAVETQGSRY 113 Query: 123 -EPPQGIDWICVSPK 136 + ID + +SPK Sbjct: 114 QDWLTQIDDVTLSPK 128 >gi|116253993|ref|YP_769831.1| hypothetical protein RL4256 [Rhizobium leguminosarum bv. viciae 3841] gi|115258641|emb|CAK09745.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 247 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 41/147 (27%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G VF R GC+ +C +CD+ Sbjct: 8 VSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDS------------ 44 Query: 65 YNVDQLADLIEEQWITGEKEGRY-------------CVLTGGEPLLQVDVPLIQALNKRG 111 + + +QWI E + L+GG P +Q PLI+ + +G Sbjct: 45 --LHAVESAFRDQWIPMSTEAVWHKVTELSGGKPLTVSLSGGNPAIQPLRPLIELGHSQG 102 Query: 112 FEIAVETNGTIEPP--QGIDWICVSPK 136 + A+ET G++ + +D + +SPK Sbjct: 103 YRFALETQGSVAQAWFRDLDTLVISPK 129 >gi|15669841|ref|NP_248655.1| coenzyme PQQ synthesis protein III [Methanocaldococcus jannaschii DSM 2661] gi|41688758|sp|Q59039|Y1645_METJA RecName: Full=Uncharacterized protein MJ1645 gi|1592229|gb|AAB99666.1| coenzyme PQQ synthesis protein III isolog (Haemophilus influenzae} [Methanocaldococcus jannaschii DSM 2661] Length = 243 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 28/150 (18%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD----FVGIQGTK 61 I+EIF ++ GEG + GR +F RF+GC L C +CD + F ++ Sbjct: 2 IREIFNSIMGEGKYIGRRFIFVRFAGCPL-----------NCVYCDEESKGYFNRVEKIP 50 Query: 62 G-GRYNVDQ---LADLIEEQWITGEKEGRYCVLTGGEPLL---QVDVPLIQALNKRGFEI 114 G G + Q + D+I + TGGEPLL Q+ + + L +G+ Sbjct: 51 GSGEFETLQKMEIEDIINAIDKLKTPDLFAVSFTGGEPLLYHKQIK-EIAEILKDKGYRT 109 Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIK 144 +E+NG P+ I + + A D+K+K Sbjct: 110 FLESNGMF--PERIFYFDI---ASIDIKLK 134 >gi|323438941|gb|EGA96676.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus O11] gi|323441590|gb|EGA99239.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus O46] Length = 237 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 85/212 (40%), Gaps = 24/212 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118 + G + ++ +E G + ++GG P L + L+ +G A+ET Sbjct: 49 SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108 Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY--IGFDFERFSLQ 174 G+ P ID + +SPK ++L V Q S N + FD + + Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVIAQCAPSSLNLKVVVFDDKDYDFA 168 Query: 175 PM------DGPFLEENTNLAISYCFQNPKWRL 200 M D PF + N +S N +L Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDNHTEKL 200 >gi|18977649|ref|NP_579006.1| hypothetical protein PF1277 [Pyrococcus furiosus DSM 3638] gi|18893373|gb|AAL81401.1| hypothetical protein PF1277 [Pyrococcus furiosus DSM 3638] Length = 254 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 32/134 (23%) Query: 8 EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTK 61 EIF + QGEGG GR +F RF+GC+L +C +CD+ ++ + K Sbjct: 8 EIFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------RCTYCDSRKYIDPRSVK 56 Query: 62 GGRYNVDQLADL---------IEE--QWITGEKEG--RYCVLTGGEPLLQV--DVPLIQA 106 R V+ + +EE +WIT G TGGEP LQ+ L++ Sbjct: 57 KYRVEVEPFSGKFKYFNNPVDVEEVIKWITKLDTGDIHSISYTGGEPTLQILGLASLMEK 116 Query: 107 LNKRGFEIAVETNG 120 + G++ +ET+G Sbjct: 117 AKELGYDNFLETHG 130 >gi|6066247|gb|AAF03232.1|AF156097_12 ORF12 [Pyrococcus furiosus] Length = 218 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 32/134 (23%) Query: 8 EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTK 61 EIF + QGEGG GR +F RF+GC+L +C +CD+ ++ + K Sbjct: 8 EIFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------RCTYCDSRKYIDPRSVK 56 Query: 62 GGRYNVDQLADL---------IEE--QWITGEKEG--RYCVLTGGEPLLQV--DVPLIQA 106 R V+ + +EE +WIT G TGGEP LQ+ L++ Sbjct: 57 KYRVEVEPFSGKFKYFNNPVDVEEVIKWITKLDTGDIHSISYTGGEPTLQILGLASLMEK 116 Query: 107 LNKRGFEIAVETNG 120 + G++ +ET+G Sbjct: 117 AKELGYDNFLETHG 130 >gi|270157549|ref|ZP_06186206.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|289164069|ref|YP_003454207.1| hypothetical protein LLO_0725 [Legionella longbeachae NSW150] gi|269989574|gb|EEZ95828.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|288857242|emb|CBJ11067.1| hypothetical protein LLO_0725 [Legionella longbeachae NSW150] Length = 291 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 52/123 (42%), Gaps = 25/123 (20%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69 F TLQGEG G A F R + CNL C FCDT F G ++ + Sbjct: 27 FFTLQGEGPFRGHPAYFIRLAKCNL-----------ACSFCDTYFDS--GEWRNFTSLLE 73 Query: 70 LADLIEE-----------QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-IAVE 117 AD + E W G + V+TGGEP LQ ++ + + F+ +E Sbjct: 74 EADQVIEDFFKNRNLPPPSWAQGLTKKMVLVITGGEPSLQQNLSAFLDIAQPYFQSTQIE 133 Query: 118 TNG 120 +NG Sbjct: 134 SNG 136 >gi|115378070|ref|ZP_01465248.1| radical activating enzyme [Stigmatella aurantiaca DW4/3-1] gi|115364909|gb|EAU63966.1| radical activating enzyme [Stigmatella aurantiaca DW4/3-1] Length = 194 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 21/99 (21%) Query: 26 FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F R +GC+L +C +CD++F GT+ V + + + Sbjct: 5 FVRLTGCHL-----------RCTYCDSEFAFRGGTRMPNAQVVEQVKALRTPMVE----- 48 Query: 86 RYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 +TGGEPLLQ V PL++AL G + +ET+G I+ Sbjct: 49 ----ITGGEPLLQPGVYPLMEALLAEGLTVLLETSGAID 83 >gi|99081885|ref|YP_614039.1| radical SAM family protein [Ruegeria sp. TM1040] gi|99038165|gb|ABF64777.1| Radical SAM [Ruegeria sp. TM1040] Length = 235 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 5 IAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDSLHAVDSAHRHSW 53 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 ++ A E + ++G++ L+GG P +Q PLI G+ A ET G+I Sbjct: 54 AAMETEAVWQEVRRLSGDQP-LTVSLSGGNPAIQDFGPLIARGKAAGYRFACETQGSIPR 112 Query: 125 P--QGIDWICVSPK 136 P ++ + +SPK Sbjct: 113 PWFSDLETLVLSPK 126 >gi|213422189|ref|ZP_03355255.1| hypothetical protein Salmonentericaenterica_32418 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 109 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 13/95 (13%) Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + K G + + L +I Q T R+ V+TGGEP + +PL L K GF +E Sbjct: 19 ESDKWGAASSEDLLAVINRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKSGFSCQIE 74 Query: 118 TNGTIE---PPQGIDWICVSPKAGCDLKIKGGQEL 149 T+GT E P W+ VSPK + ++GG ++ Sbjct: 75 TSGTHEVRCTPN--TWVTVSPK----VNMRGGYDV 103 >gi|283470004|emb|CAQ49215.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus ST398] Length = 237 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 85/212 (40%), Gaps = 24/212 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118 + G + ++ +E G + ++GG P L + L+ +G A+ET Sbjct: 49 SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108 Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY--IGFDFERFSLQ 174 G+ P ID + +SPK ++L V Q S N + FD + + Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVIAQCVPSSLNLKVVVFDDKDYDFA 168 Query: 175 PM------DGPFLEENTNLAISYCFQNPKWRL 200 M D PF + N +S N +L Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDNHTEKL 200 >gi|253701563|ref|YP_003022752.1| radical SAM protein [Geobacter sp. M21] gi|251776413|gb|ACT18994.1| Radical SAM domain protein [Geobacter sp. M21] Length = 251 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 37/138 (26%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-------IQ 58 + E F ++QGEG G VF R +GCNL C FCDT + ++ Sbjct: 9 LVECFSSIQGEGVLVGLRQVFLRLAGCNL-----------NCSFCDTPGMSETPKECLLE 57 Query: 59 GTKGGR--------YNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVD-----VPLI 104 T G R ++++A L+ E W G + + +TGGEPLL +P++ Sbjct: 58 LTPGRRDFFRVPNPVGLERVATLL-ESWTAGWPGIHHSISVTGGEPLLYAAELKEWLPVL 116 Query: 105 QALNKRGFEIAVETNGTI 122 + L + +ETNGT+ Sbjct: 117 RTL----LPVYLETNGTL 130 >gi|147921309|ref|YP_684877.1| hypothetical protein RCIX33 [uncultured methanogenic archaeon RC-I] gi|110620273|emb|CAJ35551.1| conserved hypothetical protein [uncultured methanogenic archaeon RC-I] Length = 245 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 63/155 (40%), Gaps = 24/155 (15%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 ++EIF+++QGEG + G F RF CNL +C +CDT K Sbjct: 5 VREIFVSVQGEGPYVGYRQAFVRFPKCNL-----------ECLYCDTAKDWDSNKKCMVE 53 Query: 66 NVDQLADLIEEQ--------WITGEKEGRY--CVLTGGEPLLQVDVPLIQALNKRGFEIA 115 D EE+ E++ + LTGGEPLL I+ L + + Sbjct: 54 KTPGSGDFAEEENPITPGRLLTIAERDPKIHSISLTGGEPLLYGS--FIKELKGAKYPLY 111 Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 +ETN T+ P D V D K+K + K Sbjct: 112 LETNMTL-PEGAKDVKDVVKIVSGDFKLKAHCDFK 145 >gi|22298438|ref|NP_681685.1| hypothetical protein tll0895 [Thermosynechococcus elongatus BP-1] gi|22294618|dbj|BAC08447.1| tll0895 [Thermosynechococcus elongatus BP-1] Length = 301 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 71/262 (27%), Positives = 101/262 (38%), Gaps = 74/262 (28%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---FVG----IQGT 60 EIF +QGEG + G +F R +GC+L +C +CD+ FV I+ Sbjct: 56 EIFSAIQGEGANVGCRQIFIRLAGCDL-----------RCTYCDSAHTWFVPSHALIEKQ 104 Query: 61 KGGRY-----NVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQVD-----VPLIQALNK 109 G R+ N A ++E Q + LTGGEPLL +PL++A Sbjct: 105 TGDRHFQTVPNPVSAAHILEAVQRLNTPPIHDSISLTGGEPLLHAATLARFLPLLKA--H 162 Query: 110 RGFEIAVETNGTIEPPQGIDWIC-VSPKAGCDLKIKG----------GQELKL------- 151 + +ET G P+ + I G D+K+ G L+L Sbjct: 163 SSLPLYLETGG--HHPEALQLILPYLDSVGMDIKLPSVSGECHWSAHGVFLRLCDRAPVE 220 Query: 152 VFPQVNVSPENYIGFDFERF-----SLQPMDGPFLEENTNLAISYCFQNP------KW-- 198 VF +V VS D +R S+ P FL+ T + C P KW Sbjct: 221 VFCKVIVS-RTTDPADLDRLSALVASVNPHIPIFLQPVTPVGTGRCTPPPTPDQVLKWQG 279 Query: 199 ---------RLSVQTHKFIGIR 211 R+ QTHKF+G R Sbjct: 280 QLKTRLTHVRVVPQTHKFLGQR 301 >gi|49482966|ref|YP_040190.1| radical activating enzyme [Staphylococcus aureus subsp. aureus MRSA252] gi|257424829|ref|ZP_05601256.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus 55/2053] gi|257427497|ref|ZP_05603896.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus 65-1322] gi|257430128|ref|ZP_05606512.1| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432830|ref|ZP_05609190.1| coenzyme PQQ synthesis [Staphylococcus aureus subsp. aureus E1410] gi|257435734|ref|ZP_05611782.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus M876] gi|282903337|ref|ZP_06311228.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus C160] gi|282905117|ref|ZP_06312975.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus Btn1260] gi|282908094|ref|ZP_06315925.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910354|ref|ZP_06318158.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus WBG10049] gi|282913547|ref|ZP_06321336.1| ExsD protein [Staphylococcus aureus subsp. aureus M899] gi|282916048|ref|ZP_06323811.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus D139] gi|282918500|ref|ZP_06326237.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus C427] gi|282923465|ref|ZP_06331145.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus C101] gi|283769872|ref|ZP_06342764.1| queuosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus H19] gi|283957539|ref|ZP_06374992.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus A017934/97] gi|293500594|ref|ZP_06666445.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus 58-424] gi|293509540|ref|ZP_06668251.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus M809] gi|293524126|ref|ZP_06670813.1| ExsD protein [Staphylococcus aureus subsp. aureus M1015] gi|295427286|ref|ZP_06819921.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590363|ref|ZP_06949002.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus MN8] gi|49241095|emb|CAG39773.1| putative radical activating enzyme [Staphylococcus aureus subsp. aureus MRSA252] gi|257272399|gb|EEV04522.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus 55/2053] gi|257275690|gb|EEV07163.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus 65-1322] gi|257279325|gb|EEV09926.1| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282245|gb|EEV12380.1| coenzyme PQQ synthesis [Staphylococcus aureus subsp. aureus E1410] gi|257284925|gb|EEV15044.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus M876] gi|282314333|gb|EFB44723.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus C101] gi|282317634|gb|EFB48006.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus C427] gi|282319996|gb|EFB50343.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus D139] gi|282322579|gb|EFB52901.1| ExsD protein [Staphylococcus aureus subsp. aureus M899] gi|282325746|gb|EFB56054.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus WBG10049] gi|282327759|gb|EFB58041.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331942|gb|EFB61453.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus Btn1260] gi|282596292|gb|EFC01253.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus C160] gi|283460019|gb|EFC07109.1| queuosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus H19] gi|283790990|gb|EFC29805.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus A017934/97] gi|290921089|gb|EFD98150.1| ExsD protein [Staphylococcus aureus subsp. aureus M1015] gi|291095599|gb|EFE25860.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus 58-424] gi|291467637|gb|EFF10152.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus M809] gi|295128674|gb|EFG58305.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576662|gb|EFH95377.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus MN8] gi|312438868|gb|ADQ77939.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus TCH60] gi|315194326|gb|EFU24718.1| putative radical activating enzyme [Staphylococcus aureus subsp. aureus CGS00] Length = 237 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 85/212 (40%), Gaps = 24/212 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118 + G + ++ +E G + ++GG P L + L+ +G A+ET Sbjct: 49 SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108 Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY--IGFDFERFSLQ 174 G+ P ID + +SPK ++L V Q S N + FD + + Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVIAQCVPSSLNLKVVVFDDKDYDFA 168 Query: 175 PM------DGPFLEENTNLAISYCFQNPKWRL 200 M D PF + N +S N +L Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDNHTEKL 200 >gi|259419192|ref|ZP_05743109.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Silicibacter sp. TrichCH4B] gi|259345414|gb|EEW57268.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Silicibacter sp. TrichCH4B] Length = 235 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 5 IAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDSLHAVESQYRHSW 53 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 +D A + ++G + L+GG P +Q PLI G+ A ET G+I Sbjct: 54 APMDTDAVWAKVHKLSGGQP-LTVSLSGGNPAIQDFGPLITKGRAAGYRFACETQGSIPR 112 Query: 125 P--QGIDWICVSPK 136 P +D + +SPK Sbjct: 113 PWFADLDTLVLSPK 126 >gi|327189839|gb|EGE56977.1| organic-radical-activating protein [Rhizobium etli CNPAF512] Length = 242 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 41/147 (27%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G VF R GC+ +C +CD+ Sbjct: 8 VSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDS------------ 44 Query: 65 YNVDQLADLIEEQWITGEKEGRY-------------CVLTGGEPLLQVDVPLIQALNKRG 111 + + EQWI E + L+GG P +Q PLI+ + +G Sbjct: 45 --LHAVDSAFREQWIPMSTEAIWQEVTKLSAGRPMTVSLSGGNPAIQPLGPLIEFGHSQG 102 Query: 112 FEIAVETNGTIEPP--QGIDWICVSPK 136 + A+ET G+I + +D + +SPK Sbjct: 103 YRFALETQGSIARNWFRDLDVLVLSPK 129 >gi|209551071|ref|YP_002282988.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536827|gb|ACI56762.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 242 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 23/138 (16%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 8 ISEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDS----LHAVDSA- 51 Query: 65 YNVDQLADLIEEQW--ITGEKEGR--YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + L +E W +T GR L+GG P +Q PLI+ + +G+ A+ET G Sbjct: 52 FRDQWLPMSVEAVWQQVTKLSGGRPLTVSLSGGNPAIQPLGPLIEFGHSQGYRFALETQG 111 Query: 121 TIEPP--QGIDWICVSPK 136 ++ + +D + +SPK Sbjct: 112 SVARDWFRDLDMLVLSPK 129 >gi|82750412|ref|YP_416153.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus RF122] gi|82655943|emb|CAI80347.1| coenzyme PQQ synthesis homolog [Staphylococcus aureus RF122] Length = 237 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 85/212 (40%), Gaps = 24/212 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118 + G + ++ +E G + ++GG P L + L+ +G A+ET Sbjct: 49 SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108 Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY--IGFDFERFSLQ 174 G+ P ID + +SPK ++L V Q S N + FD + + Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVITQCVPSSLNLKVVVFDDKDYDFA 168 Query: 175 PM------DGPFLEENTNLAISYCFQNPKWRL 200 M D PF + N +S N +L Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDNHTEKL 200 >gi|15923700|ref|NP_371234.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926387|ref|NP_373920.1| hypothetical protein SA0665 [Staphylococcus aureus subsp. aureus N315] gi|21282401|ref|NP_645489.1| hypothetical protein MW0672 [Staphylococcus aureus subsp. aureus MW2] gi|49485582|ref|YP_042803.1| putative radical activating enzyme [Staphylococcus aureus subsp. aureus MSSA476] gi|57651549|ref|YP_185647.1| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus COL] gi|87162096|ref|YP_493398.1| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194484|ref|YP_499278.1| hypothetical protein SAOUHSC_00719 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267170|ref|YP_001246113.1| radical SAM domain-containing protein [Staphylococcus aureus subsp. aureus JH9] gi|150393218|ref|YP_001315893.1| radical SAM domain-containing protein [Staphylococcus aureus subsp. aureus JH1] gi|151220891|ref|YP_001331713.1| hypothetical protein NWMN_0679 [Staphylococcus aureus subsp. aureus str. Newman] gi|156979038|ref|YP_001441297.1| coenzyme PQQ synthesis homologue [Staphylococcus aureus subsp. aureus Mu3] gi|161508974|ref|YP_001574633.1| organic radical-activating protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140926|ref|ZP_03565419.1| organic radical-activating protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315349|ref|ZP_04838562.1| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731333|ref|ZP_04865498.1| organic radical-activating protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253732846|ref|ZP_04867011.1| organic radical-activating protein [Staphylococcus aureus subsp. aureus TCH130] gi|255005502|ref|ZP_05144103.2| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794969|ref|ZP_05643948.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus A9781] gi|258418286|ref|ZP_05682551.1| radical activating enzyme family protein [Staphylococcus aureus A9763] gi|258421583|ref|ZP_05684508.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus A9719] gi|258430776|ref|ZP_05688488.1| radical activating enzyme family protein [Staphylococcus aureus A9299] gi|258441731|ref|ZP_05691003.1| coenzyme PQQ synthesis [Staphylococcus aureus A8115] gi|258445827|ref|ZP_05694004.1| radical activating enzyme family protein [Staphylococcus aureus A6300] gi|258449638|ref|ZP_05697740.1| radical activating enzyme family protein [Staphylococcus aureus A6224] gi|258452918|ref|ZP_05700912.1| radical activating enzyme family protein [Staphylococcus aureus A5948] gi|258454039|ref|ZP_05702011.1| radical activating enzyme family protein [Staphylococcus aureus A5937] gi|262048445|ref|ZP_06021330.1| hypothetical protein SAD30_2172 [Staphylococcus aureus D30] gi|262052792|ref|ZP_06024980.1| hypothetical protein SA930_0349 [Staphylococcus aureus 930918-3] gi|269202330|ref|YP_003281599.1| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus ED98] gi|282894475|ref|ZP_06302704.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus A8117] gi|282922002|ref|ZP_06329699.1| 7-cyano-7-deazaguanosine (preQ) biosynthesis protein QueE [Staphylococcus aureus A9765] gi|282926573|ref|ZP_06334203.1| 7-cyano-7-deazaguanosine (preQ) biosynthesis protein QueE [Staphylococcus aureus A10102] gi|294849379|ref|ZP_06790122.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus A9754] gi|295406428|ref|ZP_06816234.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus A8819] gi|296274774|ref|ZP_06857281.1| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus MR1] gi|297208566|ref|ZP_06924995.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245155|ref|ZP_06929029.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus A8796] gi|300912658|ref|ZP_07130101.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus TCH70] gi|304381675|ref|ZP_07364324.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13700601|dbj|BAB41898.1| SA0665 [Staphylococcus aureus subsp. aureus N315] gi|14246479|dbj|BAB56872.1| coenzyme PQQ synthesis homologue [Staphylococcus aureus subsp. aureus Mu50] gi|21203838|dbj|BAB94537.1| MW0672 [Staphylococcus aureus subsp. aureus MW2] gi|49244025|emb|CAG42451.1| putative radical activating enzyme [Staphylococcus aureus subsp. aureus MSSA476] gi|57285735|gb|AAW37829.1| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus COL] gi|87128070|gb|ABD22584.1| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202042|gb|ABD29852.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740239|gb|ABQ48537.1| Radical SAM domain protein [Staphylococcus aureus subsp. aureus JH9] gi|149945670|gb|ABR51606.1| Radical SAM domain protein [Staphylococcus aureus subsp. aureus JH1] gi|150373691|dbj|BAF66951.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156721173|dbj|BAF77590.1| coenzyme PQQ synthesis homologue [Staphylococcus aureus subsp. aureus Mu3] gi|160367783|gb|ABX28754.1| organic radical-activating protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725074|gb|EES93803.1| organic radical-activating protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253729211|gb|EES97940.1| organic radical-activating protein [Staphylococcus aureus subsp. aureus TCH130] gi|257788941|gb|EEV27281.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus A9781] gi|257839079|gb|EEV63558.1| radical activating enzyme family protein [Staphylococcus aureus A9763] gi|257842509|gb|EEV66933.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus A9719] gi|257849448|gb|EEV73418.1| radical activating enzyme family protein [Staphylococcus aureus A9299] gi|257852200|gb|EEV76127.1| coenzyme PQQ synthesis [Staphylococcus aureus A8115] gi|257855403|gb|EEV78341.1| radical activating enzyme family protein [Staphylococcus aureus A6300] gi|257857146|gb|EEV80045.1| radical activating enzyme family protein [Staphylococcus aureus A6224] gi|257859429|gb|EEV82283.1| radical activating enzyme family protein [Staphylococcus aureus A5948] gi|257863904|gb|EEV86660.1| radical activating enzyme family protein [Staphylococcus aureus A5937] gi|259159333|gb|EEW44389.1| hypothetical protein SA930_0349 [Staphylococcus aureus 930918-3] gi|259163533|gb|EEW48090.1| hypothetical protein SAD30_2172 [Staphylococcus aureus D30] gi|262074620|gb|ACY10593.1| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus ED98] gi|269940287|emb|CBI48664.1| putative radical activating enzyme [Staphylococcus aureus subsp. aureus TW20] gi|282591466|gb|EFB96538.1| 7-cyano-7-deazaguanosine (preQ) biosynthesis protein QueE [Staphylococcus aureus A10102] gi|282593660|gb|EFB98652.1| 7-cyano-7-deazaguanosine (preQ) biosynthesis protein QueE [Staphylococcus aureus A9765] gi|282763188|gb|EFC03319.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus A8117] gi|285816411|gb|ADC36898.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus aureus 04-02981] gi|294823911|gb|EFG40337.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus A9754] gi|294968573|gb|EFG44596.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus A8819] gi|296886821|gb|EFH25725.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177826|gb|EFH37075.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus A8796] gi|300886904|gb|EFK82106.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus TCH70] gi|302750608|gb|ADL64785.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339778|gb|EFM05723.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829203|emb|CBX34045.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129385|gb|EFT85378.1| organic radical-activating protein [Staphylococcus aureus subsp. aureus CGS03] gi|315197686|gb|EFU28021.1| organic radical-activating protein [Staphylococcus aureus subsp. aureus CGS01] gi|320139958|gb|EFW31819.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus MRSA131] gi|320141952|gb|EFW33780.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus MRSA177] gi|329313432|gb|AEB87845.1| Radical SAM domain protein [Staphylococcus aureus subsp. aureus T0131] gi|329724494|gb|EGG61001.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus 21172] gi|329728549|gb|EGG64982.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus 21189] gi|329729722|gb|EGG66123.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus 21193] Length = 237 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 85/212 (40%), Gaps = 24/212 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118 + G + ++ +E G + ++GG P L + L+ +G A+ET Sbjct: 49 SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108 Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY--IGFDFERFSLQ 174 G+ P ID + +SPK ++L V Q S N + FD + + Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVITQCVPSSLNLKVVVFDDKDYDFA 168 Query: 175 PM------DGPFLEENTNLAISYCFQNPKWRL 200 M D PF + N +S N +L Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDNHTEKL 200 >gi|83951567|ref|ZP_00960299.1| radical SAM domain protein [Roseovarius nubinhibens ISM] gi|83836573|gb|EAP75870.1| radical SAM domain protein [Roseovarius nubinhibens ISM] Length = 236 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 19/141 (13%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M I EIF T+QGEG G VF R GC+ +C +CDT + Sbjct: 1 MSSLRISEIFGPTIQGEGILIGEPTVFVRAGGCDY-----------RCSWCDTPH-AVDS 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + D+ +E + + L+GG P +Q PLI +G+ A ET Sbjct: 49 EHRSSWTPMTTFDIWDEIQRLSDGQPLTVSLSGGNPAIQDFGPLIALGRAQGYRFACETQ 108 Query: 120 GTIEPPQG----IDWICVSPK 136 G+I +G +D + +SPK Sbjct: 109 GSIA--RGWFNVLDTLVLSPK 127 >gi|86359303|ref|YP_471195.1| organic-radical-activating protein [Rhizobium etli CFN 42] gi|86283405|gb|ABC92468.1| organic-radical-activating protein [Rhizobium etli CFN 42] Length = 242 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 41/147 (27%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G VF R GC+ +C +CD+ Sbjct: 8 VSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDS-----------L 45 Query: 65 YNVDQLADLIEEQWITGEKEGRY-------------CVLTGGEPLLQVDVPLIQALNKRG 111 Y VD +QW+ E + L+GG P +Q PLI+ + +G Sbjct: 46 YAVDSA---FRDQWLPMSVEAIWQEVTKLSGGNPLTVSLSGGNPAIQPLRPLIELGHSKG 102 Query: 112 FEIAVETNGTIEPP--QGIDWICVSPK 136 + A+ET G++ + +D + +SPK Sbjct: 103 YRFALETQGSVAQNWFRDLDVLVLSPK 129 >gi|116329391|ref|YP_799111.1| organic radical activating protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330008|ref|YP_799726.1| organic radical activating protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122135|gb|ABJ80178.1| Organic radical activating enzyme [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123697|gb|ABJ74968.1| Organic radical activating enzyme [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 243 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 97/238 (40%), Gaps = 48/238 (20%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 S+ EI+L+L GEG G VF R +GC+L G + +CDT + + + G Sbjct: 13 SVHEIYLSLSGEGISTGIPTVFVRMAGCSLRCGMA----IGKKLWCDTPY-ALSPSAGEE 67 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI---------- 114 ++ ++ + I+E + +LTGGEPL + AL F Sbjct: 68 MDLKRVLNRIQELSPVYTQ----VLLTGGEPLEGGNRDFSLALGNEIFRTRKFSNSYPRA 123 Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKG-GQELKLVFPQVNVSPE-----NYIGF-- 166 VETNG E +G+D + D K+ G G E ++ + + + + I F Sbjct: 124 RVETNGA-ESIEGLDQFVFT----LDYKLPGSGMENRMNLENLEIYNKRKNELDEIKFVI 178 Query: 167 ----DFER----FSLQPMDGPFLEENTNLAIS--------YCFQNPKWRLSVQTHKFI 208 DFER + + G L +S + RLS+QTHK+I Sbjct: 179 RDRNDFERCLEVIKVHELSGNLLASPVQGELSPEILSEWLKSSLGSRLRLSLQTHKYI 236 >gi|126737387|ref|ZP_01753122.1| radical activating protein [Roseobacter sp. SK209-2-6] gi|126721972|gb|EBA18675.1| radical activating protein [Roseobacter sp. SK209-2-6] Length = 235 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 19/136 (13%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-- 62 I EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 5 IAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDSLHAVDSENRHDW 53 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + D++ D + ++G K + +GG P +Q PLI+ + G+ A ET G+I Sbjct: 54 AKMSADEVFDEVCR--LSGGKPLTVSI-SGGNPAIQDFAPLIRLGHAAGYGFACETQGSI 110 Query: 123 EPPQ--GIDWICVSPK 136 P +D + +SPK Sbjct: 111 AKPWFGDLDTLVLSPK 126 >gi|311030030|ref|ZP_07708120.1| radical SAM domain-containing protein [Bacillus sp. m3-13] gi|311032350|ref|ZP_07710440.1| radical SAM domain-containing protein [Bacillus sp. m3-13] Length = 239 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 16/138 (11%) Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 L + EIF T+QGEG G+ +F R +GC+ +C +CD+ F G+ Sbjct: 4 LIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSA 51 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 + ++ E+ G K + ++GG P L ++ L+Q L++ ++A+ET G Sbjct: 52 KDDIVMMSHEEIYEQLVEIGGKAFNHVTISGGNPALLKNIGKLVQLLHENDIKVALETQG 111 Query: 121 TI--EPPQGIDWICVSPK 136 + + ID + +SPK Sbjct: 112 SKWQDWLMEIDDLTISPK 129 >gi|197117706|ref|YP_002138133.1| 7-carboxy-7-deazaguanine synthase [Geobacter bemidjiensis Bem] gi|197087066|gb|ACH38337.1| 7-carboxy-7-deazaguanine synthase [Geobacter bemidjiensis Bem] Length = 251 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 37/138 (26%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-------IQ 58 + E F ++QGEG G VF R +GCNL C FCDT + ++ Sbjct: 9 LVECFSSIQGEGVLVGLRQVFLRLAGCNL-----------NCSFCDTPGMSETPKECLLE 57 Query: 59 GTKGGR--------YNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVD-----VPLI 104 T G R ++++A L+ E W G + + +TGGEPLL +P++ Sbjct: 58 LTPGRRDFFKVPNPVGLERVATLL-ESWTEGWPGIHHSISVTGGEPLLYAKELKEWLPVL 116 Query: 105 QALNKRGFEIAVETNGTI 122 + L + +ETNGT+ Sbjct: 117 RTL----LPVYLETNGTL 130 >gi|21673157|ref|NP_661222.1| radical activating enzyme, putative [Chlorobium tepidum TLS] gi|21646235|gb|AAM71564.1| radical activating enzyme, putative [Chlorobium tepidum TLS] Length = 220 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 23/118 (19%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +I EIF ++QGE AG F R +GC CR+CDT + GT Sbjct: 8 NISEIFYSIQGESSFAGWPCAFVRLAGCG-----------HGCRYCDTTYAEEPGTA--- 53 Query: 65 YNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 D I + + + CV +TGGEPLLQ L+ AL R + +ET G Sbjct: 54 ----MTIDEIMHRVLAFDAP---CVEVTGGEPLLQSGTFGLLSALCDRHPVVLLETGG 104 >gi|156937491|ref|YP_001435287.1| radical SAM domain-containing protein [Ignicoccus hospitalis KIN4/I] gi|156566475|gb|ABU81880.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I] Length = 352 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 25/165 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA----DLIEEQWITGEKEGRYCVLTGGEPL 96 +R + C FC ++ GR + D+L+ D+I E T +Y TGGEPL Sbjct: 19 ERCNFNCIFCHSE-------GAGRGSFDELSVNDYDMIAEA--TSRLGLKYVKFTGGEPL 69 Query: 97 LQVDV-PLIQALNKRGF-EIAVETNGTIEPPQ-------GIDWICV---SPKAGCDLKIK 144 L+ D+ +I + + GF EI++ TNG + P + G+ WI V S K +I Sbjct: 70 LRSDLEEIIHSFKEHGFEEISITTNGFLLPERTEGLKEAGVSWINVSLHSLKRQRFRRIT 129 Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAI 189 G L V + + EN I L+ ++ +EE AI Sbjct: 130 GVDALNRVLNGIEKALENGIEVRVNVVVLRGINEDEVEEIVKYAI 174 >gi|78186318|ref|YP_374361.1| radical activating enzyme, putative [Chlorobium luteolum DSM 273] gi|78166220|gb|ABB23318.1| radical activating enzyme, putative [Chlorobium luteolum DSM 273] Length = 223 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 21/119 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF ++QGE AG F R +GC S CR+CDT + T Sbjct: 5 ILQISEIFHSIQGESSFAGWPCTFIRLAGC-----------SHGCRYCDTTYA---KTAE 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 R ++ D I+E +TGGEPL Q V L+ AL G + +ET G Sbjct: 51 RRLSI---GDTIDE---ARRYHAHLIEVTGGEPLEQPAVHKLLHALCDGGGGVMLETGG 103 >gi|75759343|ref|ZP_00739440.1| Queuosine biosynthesis protein QueE [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896375|ref|YP_002444786.1| radical SAM domain protein [Bacillus cereus G9842] gi|74493175|gb|EAO56294.1| Queuosine biosynthesis protein QueE [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542694|gb|ACK95088.1| radical SAM domain protein [Bacillus cereus G9842] Length = 238 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 16/140 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 + + D+ +E G ++ + ++GG P L ++ L+ L + G A+ET Sbjct: 49 SAKNQIRQMTAEDIWDELVAIGGEKFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPK 136 G+ + ID + +SPK Sbjct: 109 QGSKWQDWLLQIDEVTISPK 128 >gi|86136125|ref|ZP_01054704.1| radical SAM domain protein [Roseobacter sp. MED193] gi|85826999|gb|EAQ47195.1| radical SAM domain protein [Roseobacter sp. MED193] Length = 206 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 5 IAEIFGPTIQGEGALIGEPTVFVRAGGCDF-----------RCNWCDSLHAVDSEYRHSW 53 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + A + ++G++ L+GG P +Q PLI G+ A ET G+I Sbjct: 54 APMTAEAVWDRVRQLSGDRP-LTVSLSGGNPAIQDFGPLIAMGRAAGYRFACETQGSIAR 112 Query: 125 P--QGIDWICVSPK 136 P +D + +SPK Sbjct: 113 PWFADLDTLVLSPK 126 >gi|284023732|ref|ZP_06378130.1| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus 132] Length = 237 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 24/207 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118 + G + ++ +E G + ++GG P L + L+ +G A+ET Sbjct: 49 SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108 Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY--IGFDFERFSLQ 174 G+ P ID + +SPK ++L V Q S N + FD + + Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVITQCVPSSLNLKVVVFDDKDYDFA 168 Query: 175 PM------DGPFLEENTNLAISYCFQN 195 M D PF + N +S N Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDN 195 >gi|296284595|ref|ZP_06862593.1| coenzyme PQQ synthesis protein, conjectural [Citromicrobium bathyomarinum JL354] Length = 208 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 52/126 (41%), Gaps = 20/126 (15%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT----DFVGIQGTKGG 63 EIF ++QGEG AG F R S CNL C +CDT F G + Sbjct: 22 EIFASVQGEGPSAGEPTAFVRLSRCNL-----------ACVWCDTAYTWHFAGDERPHRS 70 Query: 64 RYNVDQLAD--LIEEQWITGEKEG---RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 D+ A+ +E + + R V+TGGEP+LQ + +ET Sbjct: 71 GQTFDRKANQVTLEVEDVAARIAALGQRRLVVTGGEPMLQAPALAQLLALLPDVTVEIET 130 Query: 119 NGTIEP 124 NGT P Sbjct: 131 NGTAFP 136 >gi|183222780|ref|YP_001840776.1| putative organic radical activating protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912811|ref|YP_001964366.1| organic radical activating enzyme [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777487|gb|ABZ95788.1| Organic radical activating enzyme [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781202|gb|ABZ99500.1| Putative organic radical activating enzyme [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 236 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 8/91 (8%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EI+ ++ GEG G VF RF+GC+L G+ R +CDT + G G Sbjct: 5 IHEIYSSISGEGISQGIPTVFVRFAGCSLRCGKTDTR----SLWCDTPYA--LGPNQGE- 57 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 L+ +++E G +LTGGEPL Sbjct: 58 -TKPLSTIMDEIVALDPTHGYQILLTGGEPL 87 >gi|167043382|gb|ABZ08085.1| putative Radical SAM superfamily protein [uncultured marine crenarchaeote HF4000_ANIW141O9] Length = 237 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 19/116 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +++GEG G +F R +GC C +CDT + G Y Sbjct: 5 IFEIFTSIEGEGILYGTKTLFVRLAGC-----------PYSCFYCDT-LDALPLDSGKEY 52 Query: 66 NVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 ++ + +LI+ T ++ Y V TGGEPL+Q + L + + RG +E+ Sbjct: 53 SITEACNLID----TSLQDNTYKVNFTGGEPLIQYEAVYELAKHVKARGLPTYLES 104 >gi|242398853|ref|YP_002994277.1| Organic radical activating enzyme, radical SAM superfamily [Thermococcus sibiricus MM 739] gi|242265246|gb|ACS89928.1| Organic radical activating enzyme, radical SAM superfamily [Thermococcus sibiricus MM 739] Length = 251 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 33/156 (21%) Query: 8 EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTK 61 EIF + QGEGG GR +F RF+GC+L +C +CD+ +++ Sbjct: 5 EIFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------KCWWCDSANYIIASKVP 53 Query: 62 GGRYNVDQLADLIE--------EQWITG-----EKEGRYCVLTGGEPLLQVD--VPLIQA 106 RY V+ E E+ ++ + TGGEP LQ L++ Sbjct: 54 KWRYEVEPFTGKFEYKPNPANFEEVVSAILHLDTGDIHSISYTGGEPTLQTRNLSTLMKK 113 Query: 107 LNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 +++ GF+ +ETNG+ P + D + A D+K Sbjct: 114 MHELGFKNFLETNGS-RPERINDIAHLVDYASVDIK 148 >gi|222149727|ref|YP_002550684.1| radical activating protein [Agrobacterium vitis S4] gi|221736709|gb|ACM37672.1| radical activating protein [Agrobacterium vitis S4] Length = 255 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 23/138 (16%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G+ VF R GC+ +C +CD+ + + R Sbjct: 16 VSEIFGPTIQGEGVLIGQPTVFVRMGGCDY-----------RCSWCDS----LHAVES-R 59 Query: 65 YNVDQLADLIEEQWITGEKEG----RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + + L ++ W E L+GG P +Q LI ++RG+ A+ET G Sbjct: 60 FREEWLPMSVQAIWAEVESLSGGVPLMVSLSGGNPAIQPLGALIAHGHERGYRFALETQG 119 Query: 121 TIEPP--QGIDWICVSPK 136 +I +D + VSPK Sbjct: 120 SIARDWFADLDVLVVSPK 137 >gi|11498053|ref|NP_069277.1| hypothetical protein AF0441 [Archaeoglobus fulgidus DSM 4304] gi|2650186|gb|AAB90793.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 225 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 31/145 (21%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 EIF ++QGEG + G +F RF+GCNL C +CDT K + Sbjct: 7 EIFESIQGEGFYIGVRQLFVRFAGCNL-----------NCYYCDT-------PKTSENCL 48 Query: 68 DQLADLIEEQWITGEK-EGRY-------CVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 D A+ + ++ E +GR TGGEP+LQ + I +L+K +E+N Sbjct: 49 DLTANRTLKNPVSAEYVQGRIDSSKVHSVCFTGGEPMLQAE--FIASLSK-THPFYLESN 105 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIK 144 T+ P+ + DLK++ Sbjct: 106 MTL--PEKAKKLKFCDYVAGDLKVR 128 >gi|254173693|ref|ZP_04880365.1| organic radical activating enzyme, radical SAM superfamily [Thermococcus sp. AM4] gi|214032385|gb|EEB73215.1| organic radical activating enzyme, radical SAM superfamily [Thermococcus sp. AM4] Length = 253 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 35/159 (22%) Query: 6 IKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQG 59 + E+F + QGEGG GR +F RF+GC+L C +CD+ +++ Sbjct: 5 MAEVFNSWQGEGGSVEGSAFGRRQIFIRFAGCDL-----------NCAWCDSREYIDASR 53 Query: 60 TKGGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLI 104 RY V+ L +++E + TGGEP LQV L+ Sbjct: 54 VSRWRYEVEPFTGKFEYRPNPASLDEVVEAVTRLDTGDIHSISYTGGEPTLQVKPLKALM 113 Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWIC-VSPKAGCDLK 142 + + GF+ +ET+G + P+ I + ++ A D+K Sbjct: 114 EEMKSLGFDNFLETHGGL--PELIREVAHLTDYASVDIK 150 >gi|153008343|ref|YP_001369558.1| radical SAM domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151560231|gb|ABS13729.1| Radical SAM domain protein [Ochrobactrum anthropi ATCC 49188] Length = 246 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 23/138 (16%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF TLQGEG G VF R GC+ +C +CD+ + + R Sbjct: 12 IAEIFGPTLQGEGVLIGEPTVFVRTGGCDY-----------RCVWCDS----LHAVES-R 55 Query: 65 YNVDQLADLIEEQW----ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + + A +E W + L+GG P +Q PLI+ G+ A+ET G Sbjct: 56 FRREWKAMSVEAVWGEVTTLSRNKPLTVSLSGGNPAIQPLGPLIEHGKTEGYRFALETQG 115 Query: 121 TIEPP--QGIDWICVSPK 136 ++ +D + +SPK Sbjct: 116 SVAQDWFSALDTLVLSPK 133 >gi|315645295|ref|ZP_07898420.1| radical SAM domain protein [Paenibacillus vortex V453] gi|315279337|gb|EFU42643.1| radical SAM domain protein [Paenibacillus vortex V453] Length = 244 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 84/204 (41%), Gaps = 30/204 (14%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G+ +F R +GC+ C +CD+ F K Sbjct: 10 VLEIFGPTVQGEGLVIGQKTMFVRTAGCDY-----------SCSWCDSSFTWDGSAKN-- 56 Query: 65 YNVDQLA--DLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 + QL+ + +E G + ++GG P L ++ L+ L+ +G + +ET G+ Sbjct: 57 -EIKQLSAQTIYDELNSLGGTTFEHVTISGGNPALIKNIGYLVDLLHDKGIRVGLETQGS 115 Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 + ID + VSPK I L V +N SP N I F Sbjct: 116 RWQDWMADIDDLTVSPKPPSSGMITDWDRLDGVIKNLNNSP-NEICIKVVIFD------- 167 Query: 180 FLEENTNLAISYCFQNPKWRLSVQ 203 E++ AI + P RL +Q Sbjct: 168 --EDDLQYAIKVHKRYPHMRLVLQ 189 >gi|14521605|ref|NP_127081.1| coenzyme PQQ synthesis protein III related [Pyrococcus abyssi GE5] gi|5458824|emb|CAB50311.1| Radical SAM family protein [Pyrococcus abyssi GE5] Length = 254 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 35/167 (20%) Query: 6 IKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-FVGIQG 59 + EIF + QGEGG GR +F RF+GC+L +C +CD+ F+ Sbjct: 6 LAEIFNSWQGEGGSVEGSAFGRRQIFIRFAGCDL-----------RCSWCDSKAFIDASK 54 Query: 60 TKGGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLI 104 K R V+ L ++I+ + TGGEP LQ+ L+ Sbjct: 55 VKRWRIEVEPFSRKFEYRENPASLDEVIKVVLSLDTGDVHSISYTGGEPTLQIKGLKALM 114 Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWIC-VSPKAGCDLKIKGGQELK 150 + L + GF+ +ET+G P+ I + ++ A D+K + + K Sbjct: 115 KELKEVGFDNFLETHGGF--PEFIREVAHLTDYASVDIKDESAKATK 159 >gi|261403228|ref|YP_003247452.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7] gi|261370221|gb|ACX72970.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7] Length = 243 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 22/159 (13%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---FVGI--QGT 60 I+EIF ++ GEG + GR +F RF+GC L C +CD + V + Q Sbjct: 2 IREIFNSIMGEGKYIGRRFIFIRFAGCPL-----------NCLYCDEEHKKHVNLVEQYP 50 Query: 61 KGGRY---NVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLI-QALNKRGFEIA 115 G++ N++ D+I+ + TGGEPLL ++ I + L G+ Sbjct: 51 SSGKFEKQNLESEEDIIKAVNKLKTPDLFSVSFTGGEPLLYHKEIKEISKILKNLGYRTF 110 Query: 116 VETNGTI-EPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153 +E+NG E D + K K G +E K ++ Sbjct: 111 LESNGIFPERVFHFDIASIDIKLKDHFKNIGEEEYKKIY 149 >gi|212223604|ref|YP_002306840.1| organic radical activating enzyme [Thermococcus onnurineus NA1] gi|212008561|gb|ACJ15943.1| organic radical activating enzyme [Thermococcus onnurineus NA1] Length = 253 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 36/164 (21%) Query: 1 MKLYSIKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DF 54 MKL + E+F + QGEGG GR +F RF+GC+L C +CD+ +F Sbjct: 1 MKLI-MAEVFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------NCVWCDSKEF 48 Query: 55 VGIQGTKGGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100 + RY V+ L ++++ + TGGEP LQV Sbjct: 49 IDASKVLRWRYEVEPFTGKFEYKPNPASLGEVVDAILRLDTGDIHSISYTGGEPTLQVRP 108 Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDWIC-VSPKAGCDLK 142 L++ +++ GF +ET+G + P+ I + ++ A D+K Sbjct: 109 LKALMERMHELGFSNFLETHGGL--PELIKEVAHLTDYASIDIK 150 >gi|255658308|ref|ZP_05403717.1| radical SAM domain protein [Mitsuokella multacida DSM 20544] gi|260849626|gb|EEX69633.1| radical SAM domain protein [Mitsuokella multacida DSM 20544] Length = 251 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 53/138 (38%), Gaps = 40/138 (28%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-------------- 53 EIF ++QGEG + G VF R GCNL C +CDT+ Sbjct: 10 EIFSSIQGEGKYVGCRQVFVRLEGCNL-----------DCSYCDTENKPGSHPACQVETA 58 Query: 54 -----FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 F I+ +A+L+ E + E TGGEPLL L Sbjct: 59 AGSRTFATIKNPMTASETAAVIANLLRE--VPHEAVS----FTGGEPLLHAAFIRAVVLQ 112 Query: 109 KRGF----EIAVETNGTI 122 R ++ +ETNGT+ Sbjct: 113 LRALGQPCKVFLETNGTL 130 >gi|229002868|ref|ZP_04160744.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus mycoides Rock3-17] gi|229008542|ref|ZP_04165969.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus mycoides Rock1-4] gi|228752737|gb|EEM02338.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus mycoides Rock1-4] gi|228758393|gb|EEM07564.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus mycoides Rock3-17] Length = 232 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 26/138 (18%) Query: 8 EIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66 EIF T+QGEG G+ +F R +GC+ C +CD+ F TK Sbjct: 2 EIFGPTIQGEGMVIGQKTMFIRTAGCDY-----------SCSWCDSAFTWDGSTKE---Q 47 Query: 67 VDQLADLIEEQW-----ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 + Q+A EE W I GE + ++GG P+L ++ L+ L + G A+ET G Sbjct: 48 IRQMAP--EEIWNELVEIGGEN-FSHVTISGGNPVLLKNIQFLLTVLKENGIRTAIETQG 104 Query: 121 TI--EPPQGIDWICVSPK 136 + E ID + +SPK Sbjct: 105 SKWQEWLLQIDEVTISPK 122 >gi|30019493|ref|NP_831124.1| organic radical activating protein [Bacillus cereus ATCC 14579] gi|29895037|gb|AAP08325.1| Organic radical activating enzyme [Bacillus cereus ATCC 14579] Length = 238 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 16/140 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 + + D+ +E G + + ++GG P L ++ L+ L + G A+ET Sbjct: 49 SAKDQIRQMTPEDIWDELVAIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPK 136 G+ + ID I +SPK Sbjct: 109 QGSKWQDWLLQIDEITISPK 128 >gi|73663319|ref|YP_302100.1| putative radical activating enzyme [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495834|dbj|BAE19155.1| putative radical activating enzyme [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 238 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 16/140 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSSFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118 + + ++ ++ + + ++GG P L + L+ + +G + A+ET Sbjct: 49 SAKEDIRMMSAEEIYDQLYHIAGDSFNHVTISGGNPALIKGIQQLVDLFDDKGIQSALET 108 Query: 119 NGTIEPP--QGIDWICVSPK 136 G+ P ID + +SPK Sbjct: 109 QGSKFQPWMTQIDDLTISPK 128 >gi|317129081|ref|YP_004095363.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus cellulosilyticus DSM 2522] gi|315474029|gb|ADU30632.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus cellulosilyticus DSM 2522] Length = 242 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 20/142 (14%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + + EIF T+QGEG GR +F R +GC+ C +CD+ F Sbjct: 1 MYKFPVLEIFGPTIQGEGMVVGRKTMFVRTAGCDY-----------SCSWCDSAFTWDGS 49 Query: 60 TKGG--RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAV 116 +K + D++ +++ G K Y ++GG P L + LI L+ ++A+ Sbjct: 50 SKEDIKQLTADEILCRLKKD---GGKSFDYVTISGGNPALFSHLDELINLLHSENVKVAL 106 Query: 117 ETNGTI--EPPQGIDWICVSPK 136 ET G+ E ID + +SPK Sbjct: 107 ETQGSRWQEWFLKIDDLTLSPK 128 >gi|218233066|ref|YP_002366125.1| radical SAM domain protein [Bacillus cereus B4264] gi|218161023|gb|ACK61015.1| radical SAM domain protein [Bacillus cereus B4264] Length = 238 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 16/140 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMIVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 + + D+ +E G + + ++GG P L ++ L+ L + G A+ET Sbjct: 49 SAKDQIRQMTPEDIWDELVAIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPK 136 G+ + ID I +SPK Sbjct: 109 QGSKWQDWLLQIDEITISPK 128 >gi|228995355|ref|ZP_04155040.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus pseudomycoides DSM 12442] gi|228764397|gb|EEM13260.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus pseudomycoides DSM 12442] Length = 232 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 26/138 (18%) Query: 8 EIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66 EIF T+QGEG G+ +F R +GC+ C +CD+ F TK Sbjct: 2 EIFGPTIQGEGMVIGQKTMFIRTAGCDY-----------SCSWCDSAFTWDGSTKE---Q 47 Query: 67 VDQLADLIEEQW-----ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 + Q+A EE W I GE + ++GG P+L ++ L+ L + G A+ET G Sbjct: 48 IRQMAP--EEIWNELVGIGGEN-FSHVTISGGNPVLLKNIQFLLTVLKENGIRTAIETQG 104 Query: 121 TI--EPPQGIDWICVSPK 136 + E ID + +SPK Sbjct: 105 SKWQEWLLQIDEVTISPK 122 >gi|303247444|ref|ZP_07333716.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ] gi|302491140|gb|EFL51032.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ] Length = 210 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 21/122 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + EIF ++QGE +AG F R SGCNL C +CDT + Sbjct: 1 MLRVHEIFASIQGESSYAGYPCAFLRLSGCNL-----------DCSWCDTRYA------S 43 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGT 121 + L + ++ G LTGGEPLL+ + L +L G + VETNG+ Sbjct: 44 ASFTAMSLDEARQKLLALGLP---LVELTGGEPLLEPLAPALAASLADAGATVLVETNGS 100 Query: 122 IE 123 ++ Sbjct: 101 LD 102 >gi|30261442|ref|NP_843819.1| radical SAM domain-containing protein [Bacillus anthracis str. Ames] gi|47526631|ref|YP_017980.1| radical sam domain-containing protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184276|ref|YP_027528.1| radical SAM domain-containing protein [Bacillus anthracis str. Sterne] gi|52143995|ref|YP_082833.1| radical SAM domain-containing protein [Bacillus cereus E33L] gi|65318711|ref|ZP_00391670.1| COG0602: Organic radical activating enzymes [Bacillus anthracis str. A2012] gi|118476912|ref|YP_894063.1| radical SAM domain-containing protein [Bacillus thuringiensis str. Al Hakam] gi|165870409|ref|ZP_02215064.1| radical SAM domain protein [Bacillus anthracis str. A0488] gi|167634333|ref|ZP_02392654.1| radical SAM domain protein [Bacillus anthracis str. A0442] gi|167639360|ref|ZP_02397632.1| radical SAM domain protein [Bacillus anthracis str. A0193] gi|170686800|ref|ZP_02878020.1| radical SAM domain protein [Bacillus anthracis str. A0465] gi|170706317|ref|ZP_02896778.1| radical SAM domain protein [Bacillus anthracis str. A0389] gi|177651608|ref|ZP_02934397.1| radical SAM domain protein [Bacillus anthracis str. A0174] gi|190568020|ref|ZP_03020930.1| radical SAM domain protein [Bacillus anthracis Tsiankovskii-I] gi|196035271|ref|ZP_03102676.1| radical SAM domain protein [Bacillus cereus W] gi|196040614|ref|ZP_03107913.1| radical SAM domain protein [Bacillus cereus NVH0597-99] gi|196046471|ref|ZP_03113696.1| radical SAM domain protein [Bacillus cereus 03BB108] gi|218902549|ref|YP_002450383.1| radical SAM domain protein [Bacillus cereus AH820] gi|225863305|ref|YP_002748683.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus cereus 03BB102] gi|227815811|ref|YP_002815820.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus anthracis str. CDC 684] gi|229604565|ref|YP_002865855.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus anthracis str. A0248] gi|254682495|ref|ZP_05146356.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus anthracis str. CNEVA-9066] gi|254726158|ref|ZP_05187940.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus anthracis str. A1055] gi|254733911|ref|ZP_05191625.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus anthracis str. Western North America USA6153] gi|254740399|ref|ZP_05198090.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus anthracis str. Kruger B] gi|254753789|ref|ZP_05205824.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus anthracis str. Vollum] gi|254758886|ref|ZP_05210913.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus anthracis str. Australia 94] gi|30255296|gb|AAP25305.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus anthracis str. Ames] gi|47501779|gb|AAT30455.1| radical SAM domain protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178203|gb|AAT53579.1| radical SAM domain protein [Bacillus anthracis str. Sterne] gi|51977464|gb|AAU19014.1| radical SAM domain protein [Bacillus cereus E33L] gi|118416137|gb|ABK84556.1| preQ(0) biosynthesis protein QueE [Bacillus thuringiensis str. Al Hakam] gi|164713904|gb|EDR19426.1| radical SAM domain protein [Bacillus anthracis str. A0488] gi|167512799|gb|EDR88173.1| radical SAM domain protein [Bacillus anthracis str. A0193] gi|167530221|gb|EDR92947.1| radical SAM domain protein [Bacillus anthracis str. A0442] gi|170128851|gb|EDS97717.1| radical SAM domain protein [Bacillus anthracis str. A0389] gi|170669323|gb|EDT20066.1| radical SAM domain protein [Bacillus anthracis str. A0465] gi|172082886|gb|EDT67949.1| radical SAM domain protein [Bacillus anthracis str. A0174] gi|190560754|gb|EDV14729.1| radical SAM domain protein [Bacillus anthracis Tsiankovskii-I] gi|195991948|gb|EDX55911.1| radical SAM domain protein [Bacillus cereus W] gi|196022655|gb|EDX61337.1| radical SAM domain protein [Bacillus cereus 03BB108] gi|196028404|gb|EDX67012.1| radical SAM domain protein [Bacillus cereus NVH0597-99] gi|218535375|gb|ACK87773.1| radical SAM domain protein [Bacillus cereus AH820] gi|225789486|gb|ACO29703.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus cereus 03BB102] gi|227002910|gb|ACP12653.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus anthracis str. CDC 684] gi|229268973|gb|ACQ50610.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus anthracis str. A0248] Length = 238 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 21/178 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 + + D+ E G + + ++GG P+L ++ L+ L + G A+ET Sbjct: 49 SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169 G+ + ID I +SPK Q+L KL +++ + +DFE Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFE 166 >gi|206977517|ref|ZP_03238411.1| radical SAM domain protein [Bacillus cereus H3081.97] gi|217958918|ref|YP_002337466.1| radical SAM domain protein [Bacillus cereus AH187] gi|222095075|ref|YP_002529135.1| radical sam domain protein [Bacillus cereus Q1] gi|206744235|gb|EDZ55648.1| radical SAM domain protein [Bacillus cereus H3081.97] gi|217067272|gb|ACJ81522.1| radical SAM domain protein [Bacillus cereus AH187] gi|221239133|gb|ACM11843.1| radical SAM domain protein [Bacillus cereus Q1] Length = 238 Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 21/178 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 + + D+ E G + + ++GG P+L ++ L+ L + G A+ET Sbjct: 49 SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169 G+ + ID I +SPK Q+L KL +++ + +DFE Sbjct: 109 QGSKWQDWLLEIDEITISPKPPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFE 166 >gi|49481559|ref|YP_035567.1| radical SAM domain-containing protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49333115|gb|AAT63761.1| radical SAM domain protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 238 Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 21/178 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 + + D+ E G + + ++GG P+L ++ L+ L + G A+ET Sbjct: 49 SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169 G+ + ID I +SPK Q+L KL +++ + +DFE Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSAMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFE 166 >gi|190893559|ref|YP_001980101.1| organic-radical-activating protein [Rhizobium etli CIAT 652] gi|190698838|gb|ACE92923.1| organic-radical-activating protein [Rhizobium etli CIAT 652] Length = 242 Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 25/139 (17%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 8 VSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDSLHAVDSAFR--- 53 Query: 65 YNVDQLADLIEE---QWITGEKEGR--YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 DQ + E Q +T GR L+GG P +Q PLI+ + +G+ A+ET Sbjct: 54 ---DQWIPMSTEAIWQEVTKLSAGRPMTVSLSGGNPAIQPLGPLIELGHSQGYRFALETQ 110 Query: 120 GTIEPP--QGIDWICVSPK 136 G++ + +D + +SPK Sbjct: 111 GSVARNWFRDLDVLVLSPK 129 >gi|317052447|ref|YP_004113563.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfurispirillum indicum S5] gi|316947531|gb|ADU67007.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfurispirillum indicum S5] Length = 236 Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 27/128 (21%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 G +A GCNL +CR+C + + + GR DQL + I+ I Sbjct: 21 GEIATTVFTHGCNL-----------RCRYCHNPALVL--GQPGRSRQDQLLEYIDRHQIG 67 Query: 81 GEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE-------PPQGIDWIC 132 +TGGEPL Q ++ L+Q L R I ++TNGT+ + +D++ Sbjct: 68 A------VAITGGEPLFQRELETLLQQLRSRKIRIKLDTNGTLPHRLKQVLEQELVDFVA 121 Query: 133 VSPKAGCD 140 V KA D Sbjct: 122 VDVKAFND 129 >gi|138894535|ref|YP_001124988.1| organic radical activating protein [Geobacillus thermodenitrificans NG80-2] gi|134266048|gb|ABO66243.1| Organic radical activating enzyme [Geobacillus thermodenitrificans NG80-2] Length = 225 Score = 44.3 bits (103), Expect = 0.012, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 19/121 (15%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA--DLIEEQW 78 G+ +F R +GC+ +CR+CD+ F + ++QL D+ + Sbjct: 4 GQKTMFVRTAGCDY-----------RCRWCDSAFTW---DGSAKEEIEQLTAEDIWQRLE 49 Query: 79 ITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSP 135 G + R+ ++GG PLL + L+ L+++G ++AVET G+ + +D + +SP Sbjct: 50 AIGGRRFRHVTISGGNPLLLAALGELVALLHEKGVQVAVETQGSRWQDWLLDVDDVTISP 109 Query: 136 K 136 K Sbjct: 110 K 110 >gi|229541150|ref|ZP_04430210.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus coagulans 36D1] gi|229325570|gb|EEN91245.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus coagulans 36D1] Length = 241 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 16/135 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G+ +F R +GC+ C +CD+ F G + GR Sbjct: 7 VIEIFGPTIQGEGMVIGKKTMFVRTAGCDY-----------ACSWCDSAFTW-NGEEKGR 54 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 + ++ ++ TG + + ++GG PLL + L+ L AVET G+ Sbjct: 55 IALMTAEEIFQKLKETGGENFSHVTISGGNPLLLKGLGELVDLLKTHQIRTAVETQGSRW 114 Query: 124 PP--QGIDWICVSPK 136 +D + +SPK Sbjct: 115 QNWLPDVDDVTISPK 129 >gi|150401262|ref|YP_001325028.1| radical SAM domain-containing protein [Methanococcus aeolicus Nankai-3] gi|150013965|gb|ABR56416.1| Radical SAM domain protein [Methanococcus aeolicus Nankai-3] Length = 248 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 59/143 (41%), Gaps = 12/143 (8%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGC--NLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I E+F ++ GEG GR +F RF GC N E + CR + V G Sbjct: 2 ISEVFSSIMGEGKFIGRRYIFIRFKGCPLNCIYCDEYTKNDMPCR---VEEVSGSGIFKE 58 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121 N + +LIE + TGGEPLL D LN G + +E+NG Sbjct: 59 YINTAENNNLIEIINKIKTPDLFAISFTGGEPLLYADKIKEYSDILNDLGHKTHLESNGM 118 Query: 122 IEPPQGIDWICVSPKAGCDLKIK 144 P I++ S D+K+K Sbjct: 119 F--PDKINYFDYS---SIDIKLK 136 >gi|254512582|ref|ZP_05124648.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Rhodobacteraceae bacterium KLH11] gi|221532581|gb|EEE35576.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Rhodobacteraceae bacterium KLH11] Length = 233 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 60/135 (44%), Gaps = 17/135 (12%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G+ VF R GC+ +C +CD+ + T Sbjct: 5 IAEIFGPTVQGEGALIGQPTVFVRTGGCDF-----------RCSWCDS-LHAVDSTFRQS 52 Query: 65 YNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 + D+ E Q ++G + L+GG P +Q PLI G+ A ET G+I Sbjct: 53 WKTMSTRDVWTEIQRLSGGRP-LTVSLSGGNPAIQDFGPLIGYGLDAGYAFACETQGSIA 111 Query: 124 PPQGID--WICVSPK 136 P D + +SPK Sbjct: 112 KPWFADLAMLVLSPK 126 >gi|42780534|ref|NP_977781.1| radical SAM domain-containing protein [Bacillus cereus ATCC 10987] gi|42736454|gb|AAS40389.1| radical SAM domain protein [Bacillus cereus ATCC 10987] Length = 238 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 21/178 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 + + D+ E G + + ++GG P L ++ L+ L + G A+ET Sbjct: 49 SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169 G+ + ID I +SPK Q+L KL +++ + +DFE Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMKTDFQKLDAMIQKLAGKDISLKVVVFDDYDFE 166 >gi|327198318|ref|YP_004306892.1| QueE [Streptococcus phage Dp-1] gi|314912620|gb|ADT64011.1| QueE [Streptococcus phage Dp-1] Length = 264 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 20/139 (14%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G+ +F R GC+ C +CD+ F T+ Sbjct: 25 IMEIFGPTIQGEGMVIGQKTIFIRTGGCDY-----------HCNWCDSAFTWNGTTEPEY 73 Query: 65 YNVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQVDVP---LIQALNKRGFEIAVETN 119 + A I + GE+ + LTGG P L ++ P +I L + GF+ +ET Sbjct: 74 ITGKEAASRILKLAFNDKGEQICNHVTLTGGNPAL-INEPMAKMISILKEHGFKFGLETQ 132 Query: 120 GTI--EPPQGIDWICVSPK 136 GT E + + I +SPK Sbjct: 133 GTRFQEWFKEVSDITISPK 151 >gi|206967568|ref|ZP_03228524.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus cereus AH1134] gi|206736488|gb|EDZ53635.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus cereus AH1134] Length = 238 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 16/140 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 + + D+ +E G + + ++GG P L ++ L+ L + G A+ET Sbjct: 49 SAKDQIRQMTPEDIWDELVAIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPK 136 G+ + ID + +SPK Sbjct: 109 QGSKWQDWLLQIDEVTISPK 128 >gi|317052127|ref|YP_004113243.1| Radical SAM domain-containing protein [Desulfurispirillum indicum S5] gi|316947211|gb|ADU66687.1| Radical SAM domain protein [Desulfurispirillum indicum S5] Length = 240 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 24/128 (18%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK---- 61 I+E+F ++QGEG GR +F R GCNL C +CDT I Sbjct: 5 IQEMFWSVQGEGPRCGRPQLFVRLHGCNL-----------TCSYCDTPASLIPRAPQSFP 53 Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVDVPLIQALNK-----RGFEI 114 GR + + + + E V +TGGEPL Q D + A + E+ Sbjct: 54 WHGRTVPNPVPLEFLQTLVAPELPFVESVSITGGEPLCQGD--FVAAFGRWLCQDMAMEV 111 Query: 115 AVETNGTI 122 +ETNGT Sbjct: 112 LLETNGTF 119 >gi|186684456|ref|YP_001867652.1| radical SAM domain-containing protein [Nostoc punctiforme PCC 73102] gi|186466908|gb|ACC82709.1| Radical SAM domain protein [Nostoc punctiforme PCC 73102] Length = 265 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 61/135 (45%), Gaps = 39/135 (28%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-------GIQGT 60 E+F +QGEG + G +F RF+ C+L +C FCD+ I+ + Sbjct: 15 EVFSAIQGEGLNVGTRQIFIRFALCDL-----------RCHFCDSAHTWNAPATCRIERS 63 Query: 61 KGGR-----YNVDQLADLIEEQWITGEKEGRYCV-----LTGGEPLLQVD-----VPLIQ 105 G R N L LIE W+ E++ C+ LTGGEPLL +P ++ Sbjct: 64 PGLRDFEIHSNPVPLPILIE--WV--EQQNLPCLHDSISLTGGEPLLHAPFLTQFLPQVR 119 Query: 106 ALNKRGFEIAVETNG 120 A+ G I +ET G Sbjct: 120 AIT--GLPIYLETGG 132 >gi|301052981|ref|YP_003791192.1| radical SAM domain-containing protein [Bacillus anthracis CI] gi|300375150|gb|ADK04054.1| radical SAM domain protein [Bacillus cereus biovar anthracis str. CI] Length = 238 Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 21/178 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 + + D+ E G + + ++GG P+L ++ L+ L + G A+ET Sbjct: 49 SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPVLLKNIGFLLSILKENGMRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169 G+ + ID I +SPK Q+L KL +++ + +DFE Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFE 166 >gi|258423359|ref|ZP_05686250.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus A9635] gi|257846420|gb|EEV70443.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus A9635] Length = 237 Score = 43.9 bits (102), Expect = 0.015, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 84/212 (39%), Gaps = 24/212 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118 + + ++ +E G + ++GG P L + L+ +G A+ET Sbjct: 49 SAKSDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108 Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY--IGFDFERFSLQ 174 G+ P ID + +SPK ++L V Q S N + FD + + Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVIAQCVPSSLNLKVVVFDDKDYDFA 168 Query: 175 PM------DGPFLEENTNLAISYCFQNPKWRL 200 M D PF + N +S N +L Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDNHTEKL 200 >gi|220910548|ref|YP_002485859.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7425] gi|219867159|gb|ACL47498.1| Radical SAM domain protein [Cyanothece sp. PCC 7425] Length = 268 Score = 43.9 bits (102), Expect = 0.015, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 36/159 (22%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-------GIQGT 60 E+F +QGEG + G +F RF+ C+L +C FCD+ I+ + Sbjct: 23 EVFSAIQGEGLNVGTRQIFIRFAQCDL-----------RCHFCDSAHTWYSRPTCQIEQS 71 Query: 61 KGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ---VDVPLIQALNK 109 G R +DQL +++ + G LTGGEPLLQ + L Q Sbjct: 72 PGQRDFQTYPNPVTIDQLLAWVKD--LHGPHLHDSISLTGGEPLLQSQFLQRLLPQLRET 129 Query: 110 RGFEIAVETNG--TIEPPQGIDWICVSPKAGCDLKIKGG 146 G + +ET G E Q + W+ + G D+K+ Sbjct: 130 IGLPLYLETGGHRPQELQQVLAWLDL---VGMDIKLPSA 165 >gi|294498043|ref|YP_003561743.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus megaterium QM B1551] gi|294347980|gb|ADE68309.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus megaterium QM B1551] Length = 243 Score = 43.9 bits (102), Expect = 0.015, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 24/144 (16%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG GR +F R +GC+ C +CD+ F K Sbjct: 7 VLEIFGPTIQGEGMVVGRKTMFVRTAGCDY-----------SCSWCDSAFTWDGSAKN-- 53 Query: 65 YNVDQLADLIEEQWITGEKEGRYC----VLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119 ++ QL E+ W ++ G C ++GG P L++ L++ L+ G + A+ET Sbjct: 54 -DIRQLT--AEQIWTELKEIGGECFDHVTISGGNPALIKAIGSLVELLHSHGVKAALETQ 110 Query: 120 GTIEPP--QGIDWICVSPKAGCDL 141 G+ ID + +SPK L Sbjct: 111 GSRYQDWFLKIDDLTISPKPPSSL 134 >gi|257459146|ref|ZP_05624265.1| radical SAM domain protein [Campylobacter gracilis RM3268] gi|257443531|gb|EEV18655.1| radical SAM domain protein [Campylobacter gracilis RM3268] Length = 321 Score = 43.9 bits (102), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 5/50 (10%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLW-SGREQDRLSAQC----RFCDT 52 E FL++QGEG +AGR+A F RF+GCNL +G +R+S + R CDT Sbjct: 5 ESFLSIQGEGKYAGRLAFFFRFAGCNLRCAGFGGERVSPKTGEILRGCDT 54 >gi|299541811|ref|ZP_07052134.1| coenzyme PQQ synthesis-like protein [Lysinibacillus fusiformis ZC1] gi|298725549|gb|EFI66190.1| coenzyme PQQ synthesis-like protein [Lysinibacillus fusiformis ZC1] Length = 242 Score = 43.9 bits (102), Expect = 0.015, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 24/144 (16%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F Sbjct: 1 MSKVPVIEIFGPTIQGEGMVVGQKTMFVRTAGCDY-----------SCSWCDSSFT---W 46 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEG----RYCVLTGGEPLLQVDVP-LIQALNKRGFEI 114 G++ + Q+ EE W ++ G + ++GG P L ++ LI L + +I Sbjct: 47 DGSGKHLIVQMT--AEEIWSELKRLGGNGFSFVTISGGNPALNPNLAELIAILKENDIKI 104 Query: 115 AVETNGTI--EPPQGIDWICVSPK 136 VET G+ + ID + +SPK Sbjct: 105 GVETQGSRWQKWMYEIDELTISPK 128 >gi|295703393|ref|YP_003596468.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus megaterium DSM 319] gi|294801052|gb|ADF38118.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus megaterium DSM 319] Length = 243 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 24/144 (16%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG GR +F R +GC+ C +CD+ F K Sbjct: 7 VLEIFGPTIQGEGMVVGRKTMFVRTAGCDY-----------SCSWCDSAFTWDGSAKN-- 53 Query: 65 YNVDQLADLIEEQWITGEKEGRYC----VLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119 ++ QL E+ W ++ G C ++GG P L++ L++ L+ G + A+ET Sbjct: 54 -DIRQLT--AEQIWTELKEIGGECFDHVTISGGNPALIKAIGSLVELLHSHGVKAALETQ 110 Query: 120 GTIEPP--QGIDWICVSPKAGCDL 141 G+ ID + +SPK L Sbjct: 111 GSRYQDWFLKIDDLTISPKPPSSL 134 >gi|260430571|ref|ZP_05784544.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Citreicella sp. SE45] gi|260418600|gb|EEX11857.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Citreicella sp. SE45] Length = 235 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 5 IAEIFGPTIQGEGALIGEPTVFVRTGGCDY-----------RCSWCDS-LHAVESRYRDT 52 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + + + +E + L+GG P +Q P+I G+ A ET G++ Sbjct: 53 WAAMSDSAVWDEVLRLSGGQPLTVSLSGGNPAIQDFAPVIARGRAAGYRFACETQGSVAR 112 Query: 125 P--QGIDWICVSPK 136 P +D + +SPK Sbjct: 113 PWFAELDTLVLSPK 126 >gi|298694039|gb|ADI97261.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus subsp. aureus ED133] gi|302332420|gb|ADL22613.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein [Staphylococcus aureus subsp. aureus JKD6159] Length = 237 Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 84/212 (39%), Gaps = 24/212 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118 + + ++ +E G + ++GG P L + L+ +G A+ET Sbjct: 49 SAKSDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108 Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY--IGFDFERFSLQ 174 G+ P ID + +SPK ++L V Q S N + FD + + Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVITQCVPSSLNLKVVVFDDKDYDFA 168 Query: 175 PM------DGPFLEENTNLAISYCFQNPKWRL 200 M D PF + N +S N +L Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDNHTEKL 200 >gi|253576603|ref|ZP_04853931.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Paenibacillus sp. oral taxon 786 str. D14] gi|251844017|gb|EES72037.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Paenibacillus sp. oral taxon 786 str. D14] Length = 253 Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 16/135 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G+ +F R +GC+ +C +CD+ F G+ Sbjct: 17 VMEIFGPTVQGEGMVIGQKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAKEM 64 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI- 122 A+++ E G + L+GG P LL L++ L+ G +AVET G+ Sbjct: 65 IRRLTPAEILGELRDIGGDRFSHVTLSGGNPALLPQLASLVELLHAEGITVAVETQGSRW 124 Query: 123 -EPPQGIDWICVSPK 136 + +D + +SPK Sbjct: 125 QDWLAEVDQVTLSPK 139 >gi|212639793|ref|YP_002316313.1| Organic radical activating enzyme [Anoxybacillus flavithermus WK1] gi|212561273|gb|ACJ34328.1| Organic radical activating enzyme [Anoxybacillus flavithermus WK1] Length = 240 Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 15/128 (11%) Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71 T+QGEG G+ +F R +GC+ +CR+CD+ F G+ Sbjct: 13 TIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSSFTW-DGSAKNEVKQMTAE 60 Query: 72 DLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEPP--QGI 128 D+ ++ G + ++GG P LL+ LI L + I +ET G++ I Sbjct: 61 DIWQQLKQLGGDRFNHVTISGGNPALLKGLRALISLLKEHNIRIGLETQGSVWQDWFYDI 120 Query: 129 DWICVSPK 136 D + +SPK Sbjct: 121 DDLTISPK 128 >gi|148264177|ref|YP_001230883.1| radical SAM domain-containing protein [Geobacter uraniireducens Rf4] gi|146397677|gb|ABQ26310.1| Radical SAM domain protein [Geobacter uraniireducens Rf4] Length = 250 Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 69/156 (44%), Gaps = 37/156 (23%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT------DFVGIQGTK 61 E+F ++QGEG G +F R GCN C +CDT +F ++GT Sbjct: 10 ELFSSIQGEGMLVGLRQIFIRLCGCNF-----------TCNYCDTESNVSVEFCQMEGTP 58 Query: 62 GGR--------YNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVDVPLIQ---ALNK 109 G R +++L LI W G + + +TGGEPLL + L+Q + + Sbjct: 59 GRRDFIQVKNPVALERLTCLI-SGWQRGWPGIHHSISITGGEPLLHYE--LLQEWLPVLR 115 Query: 110 RGFEIAVETNGTI--EPPQGIDWICVSPKAGCDLKI 143 I +ETNG + E Q I I G D+KI Sbjct: 116 EFLPIYLETNGVLHKELSQVISHI---DHVGMDIKI 148 >gi|85707174|ref|ZP_01038261.1| hypothetical protein ROS217_16361 [Roseovarius sp. 217] gi|85668333|gb|EAQ23207.1| hypothetical protein ROS217_16361 [Roseovarius sp. 217] Length = 240 Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G+ VF R GC+ +C +CD+ + Sbjct: 7 VSEIFGPTIQGEGALIGQPTVFVRTGGCDY-----------RCSWCDSLHAVESAYRETW 55 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + A + E ++G + L+GG P +Q LI + +G+ A+ET G++ Sbjct: 56 VPMSAEAVMAEVVRLSGGR-AIMVTLSGGNPAIQPLGALIDLGHAQGYRFAMETQGSVAR 114 Query: 125 P--QGIDWICVSPK 136 +D + +SPK Sbjct: 115 DWFAALDMLVLSPK 128 >gi|149203608|ref|ZP_01880577.1| radical activating protein [Roseovarius sp. TM1035] gi|149142725|gb|EDM30767.1| radical activating protein [Roseovarius sp. TM1035] Length = 240 Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G+ VF R GC+ +C +CD+ + Sbjct: 7 VSEIFGPTIQGEGALIGQPTVFVRTGGCDY-----------RCVWCDSLHAVESAYRETW 55 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + L E ++G + L+GG P +Q LI + RG+ A+ET G++ Sbjct: 56 VPMSPEVVLAEVARLSGGRP-IMVTLSGGNPAIQPLGALIDLGHARGYRFAMETQGSVAR 114 Query: 125 P--QGIDWICVSPK 136 +D + +SPK Sbjct: 115 DWFAALDMLVLSPK 128 >gi|109947611|ref|YP_664839.1| hypothetical protein Hac_1076 [Helicobacter acinonychis str. Sheeba] gi|109714832|emb|CAJ99840.1| conserved hypothetical protein [Helicobacter acinonychis str. Sheeba] Length = 230 Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 17/134 (12%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MKL + E F +LQGEG G+ ++F R GCNL + F D +G Sbjct: 1 MKL-PVVESFFSLQGEGQRIGKPSLFLRLGGCNLSC----KGFGCKTLFNDEILIGCDSL 55 Query: 61 KGGRYNVDQLADLIEEQ--------WITGEKEGRYCVLTGGEPLLQVDVPLIQAL----N 108 + D E +T + +LTGGEP L + P++ ++ + Sbjct: 56 YAVHPKFKKSWDYYNEPKPLIERLVHLTPNHKNFDFILTGGEPSLYFNNPILTSVLEHFH 115 Query: 109 KRGFEIAVETNGTI 122 ++ + VE+NG+I Sbjct: 116 RKKIPLFVESNGSI 129 >gi|78222867|ref|YP_384614.1| radical SAM family protein [Geobacter metallireducens GS-15] gi|78194122|gb|ABB31889.1| Radical SAM [Geobacter metallireducens GS-15] Length = 250 Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 68/156 (43%), Gaps = 33/156 (21%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT------DFVGIQG 59 + E+F ++QGEG G VF RF GCNL C +CDT + ++ Sbjct: 8 LAEVFSSVQGEGMLIGLRQVFVRFRGCNL-----------TCDYCDTPTEITAEPCLVEQ 56 Query: 60 TKGGR--------YNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVDVPLIQALNKR 110 T G R +D++ LI + W G + + +TGGEPLL V R Sbjct: 57 TPGRRDFVPTANPVALDRIVSLI-DGWQRGWPGVHHSISITGGEPLLSHTVLSAWLPELR 115 Query: 111 G-FEIAVETNGTIEPPQG--IDWICVSPKAGCDLKI 143 + +ETNG + G ID I + G D+KI Sbjct: 116 NILPVYLETNGIMHSVLGLLIDHIDI---IGMDIKI 148 >gi|317011141|gb|ADU84888.1| hypothetical protein HPSA_04520 [Helicobacter pylori SouthAfrica7] Length = 251 Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 9/130 (6%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL G E CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFGCETLLNDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQALNKRGFE--- 113 K ++ + LIE + +LTGGEP L + P++ ++ + + Sbjct: 60 PKFKTSWDYYNEPSSLIERLVNLAPSYKDFDFILTGGEPSLHFNNPILTSVLEHFYHKKI 119 Query: 114 -IAVETNGTI 122 + VE+NG+I Sbjct: 120 PLFVESNGSI 129 >gi|324325459|gb|ADY20719.1| radical SAM domain-containing protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 238 Score = 43.5 bits (101), Expect = 0.019, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 21/178 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 + + D+ E G + + ++GG P L ++ L+ L + G A+ET Sbjct: 49 SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169 G+ + ID I +SPK Q+L KL +++ + +DFE Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMKTDFQKLDAMIQKLSGKDISLKVVVFDDYDFE 166 >gi|109947617|ref|YP_664845.1| hypothetical protein Hac_1082 [Helicobacter acinonychis str. Sheeba] gi|109714838|emb|CAJ99846.1| conserved hypothetical protein [Helicobacter acinonychis str. Sheeba] Length = 251 Score = 43.5 bits (101), Expect = 0.019, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 17/134 (12%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MKL + E F +LQGEG G+ ++F R GCNL + F D +G Sbjct: 1 MKL-PVVESFFSLQGEGQRIGKPSLFLRLGGCNLSC----KGFGCKTLFNDEILIGCDSL 55 Query: 61 KGGRYNVDQLADLIEEQ--------WITGEKEGRYCVLTGGEPLLQVDVPLIQAL----N 108 + D E +T + +LTGGEP L + P++ ++ + Sbjct: 56 YAVHPKFKKSWDYYNEPKPLIERLVHLTPNHKNFDFILTGGEPSLYFNNPILTSVLEHFH 115 Query: 109 KRGFEIAVETNGTI 122 ++ + VE+NG+I Sbjct: 116 RKKIPLFVESNGSI 129 >gi|167950638|ref|ZP_02537712.1| Radical SAM domain protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 136 Score = 43.5 bits (101), Expect = 0.019, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 23/126 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAG-RVAVFCRFSGCNLWSGREQDRL-SAQCRFCDTDFVGIQ 58 M I EIF +LQGE AG A+ R +RL S +CDT++ Sbjct: 7 MARLRISEIFYSLQGESRTAGLSTALVLRL-----------NRLPSYVVSYCDTEY---- 51 Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVE 117 GG + +LA ++++ + + R CV TGGEPL Q + L+ +L ++G E+++E Sbjct: 52 AFSGGEWM--ELAAVLDQVERSAAR--RICV-TGGEPLAQTACIELLDSLLEQGCEVSLE 106 Query: 118 TNGTIE 123 T+G ++ Sbjct: 107 TSGALD 112 >gi|47566230|ref|ZP_00237258.1| Organic radical activating enzyme [Bacillus cereus G9241] gi|47556783|gb|EAL15114.1| Organic radical activating enzyme [Bacillus cereus G9241] Length = 238 Score = 43.5 bits (101), Expect = 0.020, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 21/178 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 + + D+ E G + + ++GG P L ++ L+ L + G A+ET Sbjct: 49 SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169 G+ + ID I +SPK Q+L KL +++ + +DFE Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMKTDFQKLDAIIQKLSGKDISLKVVVFDDYDFE 166 >gi|119386888|ref|YP_917943.1| radical SAM domain-containing protein [Paracoccus denitrificans PD1222] gi|119377483|gb|ABL72247.1| preQ(0) biosynthesis protein QueE [Paracoccus denitrificans PD1222] Length = 235 Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 5 IAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCVWCDSLHAVESSHRHEW 53 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + A E + ++G + L+GG P +Q PLI ++G+ A ET G++ Sbjct: 54 RPMSAEAVWAEVRRLSGGQP-LTVSLSGGNPAIQDFTPLIALGREQGYRFACETQGSVAQ 112 Query: 125 P--QGIDWICVSPK 136 P + + +SPK Sbjct: 113 PWFAELSTLVLSPK 126 >gi|52079923|ref|YP_078714.1| QueE [Bacillus licheniformis ATCC 14580] gi|52785294|ref|YP_091123.1| YkvL [Bacillus licheniformis ATCC 14580] gi|319646260|ref|ZP_08000490.1| YkvL protein [Bacillus sp. BT1B_CT2] gi|52003134|gb|AAU23076.1| QueE [Bacillus licheniformis ATCC 14580] gi|52347796|gb|AAU40430.1| YkvL [Bacillus licheniformis ATCC 14580] gi|317392010|gb|EFV72807.1| YkvL protein [Bacillus sp. BT1B_CT2] Length = 243 Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 18/136 (13%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ Sbjct: 7 VLEIFGPTVQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAKKD 54 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122 ++ E G + ++GG P L Q+D LI L + G A+ET GT Sbjct: 55 IKWMTAEEVYESLKDIGGNAFSHVTISGGNPALLKQLD-GLISLLKENGIRTALETQGTF 113 Query: 123 EPP--QGIDWICVSPK 136 GID + +SPK Sbjct: 114 YQDWFTGIDDLTISPK 129 >gi|163939249|ref|YP_001644133.1| radical SAM domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|163861446|gb|ABY42505.1| Radical SAM domain protein [Bacillus weihenstephanensis KBAB4] Length = 238 Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 16/140 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 + + D+ E G + + ++GG P+L ++ L+ L + G AVET Sbjct: 49 SAKDQIKQMTPEDIWNELVEIGGENFSHVTISGGNPVLLKNMQFLLSILKENGMRTAVET 108 Query: 119 NGTI--EPPQGIDWICVSPK 136 G+ + ID + +SPK Sbjct: 109 QGSKWQDWLLQIDEVTISPK 128 >gi|258511917|ref|YP_003185351.1| Radical SAM domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478643|gb|ACV58962.1| Radical SAM domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 253 Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 23/121 (19%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 EIF T++GEG AG F R CNL +C +CDT + + Sbjct: 32 EIFETVEGEGTRAGFPTTFVRVFHCNL-----------RCTWCDTPYSYAPERPAFHATL 80 Query: 68 DQLADLIEE-QWITGEKEGRYCVLTGGEPLLQVDVP--LIQALN--KRGFEIAVETNGTI 122 ++A+ +E W LTGGEPL+ LI+A+ ++ VETNG I Sbjct: 81 REIAEQVEAFGWPN-------VCLTGGEPLIHRHKSQLLIEAIAGIPSVRDVHVETNGAI 133 Query: 123 E 123 + Sbjct: 134 D 134 >gi|217033120|ref|ZP_03438583.1| hypothetical protein HPB128_8g11 [Helicobacter pylori B128] gi|298736112|ref|YP_003728637.1| 6-pyruvoyltetrahydropterin 2'-reductase [Helicobacter pylori B8] gi|216945163|gb|EEC23856.1| hypothetical protein HPB128_8g11 [Helicobacter pylori B128] gi|298355301|emb|CBI66173.1| 6-pyruvoyltetrahydropterin 2'-reductase [Helicobacter pylori B8] Length = 251 Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 17/134 (12%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MKL + E F +LQGEG + G+ ++F R GCNL + + F D G Sbjct: 1 MKL-PVVESFFSLQGEGKNIGKPSLFLRLGGCNLSC----KGFNCKTPFNDEILTGCDSL 55 Query: 61 KGGRYNVDQLAD-------LIEE-QWITGEKEGRYCVLTGGEPLLQVDVPL----IQALN 108 + D LIE + +T + +LTGGEP L + P+ ++ Sbjct: 56 YAVHPKFKETWDYYNDPKPLIERLEGLTPNYKHFDFILTGGEPSLYFNNPILISVLEHFY 115 Query: 109 KRGFEIAVETNGTI 122 ++ + VE+NG+I Sbjct: 116 RKKIPLFVESNGSI 129 >gi|14590526|ref|NP_142594.1| hypothetical protein PH0635 [Pyrococcus horikoshii OT3] gi|3257042|dbj|BAA29725.1| 254aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 254 Score = 43.1 bits (100), Expect = 0.025, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 38/139 (27%) Query: 6 IKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-FVGIQG 59 + E+F + QGEGG GR +F RF+GC+L +C +CD+ F+ Sbjct: 6 LAEVFNSWQGEGGSVPGSAFGRRQIFVRFAGCDL-----------RCIWCDSSQFIDASK 54 Query: 60 TK---------GGRY-------NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--V 101 K GR+ ++D++ D I + TG+ TGGEP LQ++ Sbjct: 55 VKKWRIEVEPFSGRFEYRENPASIDEVVDAI-LKLDTGDLHS--ISYTGGEPTLQIEGLY 111 Query: 102 PLIQALNKRGFEIAVETNG 120 L++ + GF+ +ET+G Sbjct: 112 ILMERMKGLGFDNFLETHG 130 >gi|294496219|ref|YP_003542712.1| radical SAM protein [Methanohalophilus mahii DSM 5219] gi|292667218|gb|ADE37067.1| Radical SAM domain protein [Methanohalophilus mahii DSM 5219] Length = 239 Score = 43.1 bits (100), Expect = 0.026, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 67/154 (43%), Gaps = 29/154 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-----DFV 55 M+ + EIF +QGEG + G F RF GCNL C +CDT D Sbjct: 1 METKPVSEIFCAVQGEGPYVGVRQAFVRFVGCNL-----------DCSYCDTPLDEPDHC 49 Query: 56 GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV------LTGGEPLLQVDVPLIQALNK 109 + G ++L+ ++ I E+ R V LTGGEPLL + I+ L+ Sbjct: 50 LFEKVPGSG-EFEKLSPMLCASDI--EERTRAFVNLHSVSLTGGEPLLHAE--FIRGLDL 104 Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143 + +ETN T+ I V AG D+K+ Sbjct: 105 PA-PVYLETNMTLPEKAAIVKDSVDYVAG-DVKL 136 >gi|224475851|ref|YP_002633457.1| putative organic radical activating enzyme [Staphylococcus carnosus subsp. carnosus TM300] gi|222420458|emb|CAL27272.1| putative organic radical activating enzyme [Staphylococcus carnosus subsp. carnosus TM300] Length = 237 Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 26/145 (17%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ C +CD+ F Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------HCSWCDSKFTWDGS 49 Query: 60 TKGGRYNVDQLADLIEEQWITGEKE--GRY---CVLTGGEPLLQVDV-PLIQALNKRGFE 113 K DQ+ + E+ KE G Y ++GG P L + L+ + E Sbjct: 50 AK------DQIEMMTAEEIYHQLKEVGGDYFNHVTISGGNPALIKGIQELVDLFEDKNIE 103 Query: 114 IAVETNGTIEPP--QGIDWICVSPK 136 A+ET G+ P + I+ + +SPK Sbjct: 104 TALETQGSRYQPWMRQINDLTISPK 128 >gi|57168667|ref|ZP_00367799.1| radical SAM domain protein, putative [Campylobacter coli RM2228] gi|57019948|gb|EAL56628.1| radical SAM domain protein, putative [Campylobacter coli RM2228] Length = 224 Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 7/103 (6%) Query: 28 RFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 RF+GCN G + + + CDT Y + ++L + + Sbjct: 2 RFAGCNFNCSGFGVKLIKNGKTLKGCDTIRAVFTKEFNEEYEILNASELFKRVLDLKKDF 61 Query: 85 GRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNGTIE 123 V+TGGEPL+ + P IQAL K FE+ E+NG+IE Sbjct: 62 NPIVVITGGEPLIHHENPEFIDFIQALLKNNFEVHFESNGSIE 104 >gi|154173832|ref|YP_001407349.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Campylobacter curvus 525.92] gi|112802456|gb|EAT99800.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Campylobacter curvus 525.92] Length = 225 Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 28/128 (21%) Query: 19 HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQ 77 + GRVA F+GCN+ +C +C + D V G+ + ++ + ++ + Sbjct: 16 YPGRVAAIVWFAGCNM-----------RCAYCYNIDVV----LSRGKLSAEEFCEFLDRR 60 Query: 78 WITGEKEGRYCVLTGGE-PLLQVDVPLIQALNKRGFEIAVETNGTIEP-------PQGID 129 G+ G V +GGE L Q +PL + + KRGF + V+TNG+ P ID Sbjct: 61 --IGKLSG--IVFSGGECTLSQSFLPLAREVKKRGFALKVDTNGSNLPVLKEAISQNLID 116 Query: 130 WICVSPKA 137 +I + KA Sbjct: 117 YIALDFKA 124 >gi|56698570|ref|YP_168947.1| radical SAM domain-containing protein [Ruegeria pomeroyi DSS-3] gi|56680307|gb|AAV96973.1| radical SAM domain protein [Ruegeria pomeroyi DSS-3] Length = 239 Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 52/127 (40%), Gaps = 21/127 (16%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M I EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 1 MTTLRIAEIFGPTIQGEGAVIGAPTVFVRAGGCDY-----------RCSWCDS----LHA 45 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT----GGEPLLQVDVPLIQALNKRGFEIA 115 Y A E+ W + LT GG P +Q PLI+ +G+ A Sbjct: 46 VDSA-YRDTWTAMTTEQVWAEVARLSGGVPLTVSLSGGNPAIQDFGPLIEMGKAQGYRFA 104 Query: 116 VETNGTI 122 +ET G++ Sbjct: 105 LETQGSV 111 >gi|289667003|ref|ZP_06488078.1| putative radical activating enzyme [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 90 Score = 42.7 bits (99), Expect = 0.032, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 22/91 (24%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIFL+LQGE AG VF R +GC L +C +CDT + GG + Sbjct: 20 ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAY----AFHGGEW 64 Query: 66 N-VDQLADLIEEQWITGEKEGRYCVLTGGEP 95 + +D + + + R+ +TGG P Sbjct: 65 HEIDAIVAEVARHGV------RHVCVTGGPP 89 >gi|315230412|ref|YP_004070848.1| queuosine biosynthesis QueE-like protein [Thermococcus barophilus MP] gi|315183440|gb|ADT83625.1| queuosine biosynthesis QueE-like protein [Thermococcus barophilus MP] Length = 255 Score = 42.7 bits (99), Expect = 0.033, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 16/128 (12%) Query: 6 IKEIFLTLQGEGGHA-----GRVAVFCRFSGCNL---WSGREQ---DRLSAQCRFCDTDF 54 + EIF + QGEGG GR +F RF+GC+L W Q Q R+ F Sbjct: 7 LAEIFNSWQGEGGSVEGSAFGRRQIFVRFAGCDLRCVWCDSRQFIDASKVLQWRYEIEPF 66 Query: 55 VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGF 112 G K +D++ D+I TG+ TGGEP LQ+ L++ ++ GF Sbjct: 67 SGEFKYKPNPATLDEVVDVI-LSLDTGDVHS--ISYTGGEPTLQIKPLKALMEKSSELGF 123 Query: 113 EIAVETNG 120 + +ET+G Sbjct: 124 KNFLETHG 131 >gi|152974870|ref|YP_001374387.1| radical SAM domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023622|gb|ABS21392.1| Radical SAM domain protein [Bacillus cytotoxicus NVH 391-98] Length = 238 Score = 42.7 bits (99), Expect = 0.035, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 28/146 (19%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTWDGS 49 Query: 60 TKGGRYNVDQLADLI-EEQW-----ITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGF 112 K DQ+ + EE W I GE + ++GG P LL+ L++ L + Sbjct: 50 AK------DQIRQMTPEEIWKELIEIGGEN-FSHVTISGGNPVLLKHMKELLERLKENNI 102 Query: 113 EIAVETNGTI--EPPQGIDWICVSPK 136 A+ET G+ E ID I +SPK Sbjct: 103 RTAIETQGSKWQEWLLDIDEITISPK 128 >gi|119513185|ref|ZP_01632233.1| hypothetical protein N9414_13008 [Nodularia spumigena CCY9414] gi|119462172|gb|EAW43161.1| hypothetical protein N9414_13008 [Nodularia spumigena CCY9414] Length = 265 Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 40/160 (25%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-------GIQGT 60 E+F +QGEG + G +F RF+ C+L +C FCD+ I+ T Sbjct: 15 EVFSAIQGEGLNVGTRQLFIRFALCDL-----------RCHFCDSAHTWNAPATCRIELT 63 Query: 61 KGGR-----YNVDQLADLIEEQWITGEKEGRYCV-----LTGGEPLLQVD-----VPLIQ 105 G R N L LI QW+ E++ C+ LTGGEPLL +P ++ Sbjct: 64 PGLRDFEIHSNPVSLPILI--QWV--ERQNLPCLHDSISLTGGEPLLHAAFLKEFLPQVR 119 Query: 106 ALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 +L I +E+ G P Q + G DLK+ Sbjct: 120 SLT--NLPIYLESGGH-RPEQLAMVLPYLDSVGMDLKLPS 156 >gi|254713614|ref|ZP_05175425.1| Radical SAM domain protein [Brucella ceti M644/93/1] gi|254716032|ref|ZP_05177843.1| Radical SAM domain protein [Brucella ceti M13/05/1] gi|261217800|ref|ZP_05932081.1| radical SAM domain-containing protein [Brucella ceti M13/05/1] gi|261321352|ref|ZP_05960549.1| radical SAM domain-containing protein [Brucella ceti M644/93/1] gi|260922889|gb|EEX89457.1| radical SAM domain-containing protein [Brucella ceti M13/05/1] gi|261294042|gb|EEX97538.1| radical SAM domain-containing protein [Brucella ceti M644/93/1] Length = 243 Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%) Query: 6 IKEIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 9 ISEIFSPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 56 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 57 WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVAK 116 Query: 125 P--QGIDWICVSPK 136 +D + +SPK Sbjct: 117 DWFSRLDTLVLSPK 130 >gi|254718024|ref|ZP_05179835.1| Radical SAM domain protein [Brucella sp. 83/13] gi|265982972|ref|ZP_06095707.1| radical SAM domain-containing protein [Brucella sp. 83/13] gi|306839805|ref|ZP_07472606.1| Radical SAM domain protein [Brucella sp. NF 2653] gi|264661564|gb|EEZ31825.1| radical SAM domain-containing protein [Brucella sp. 83/13] gi|306405160|gb|EFM61438.1| Radical SAM domain protein [Brucella sp. NF 2653] Length = 247 Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 13 ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 60 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 61 WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIEHGKAEGYRFALETQGSVAK 120 Query: 125 P--QGIDWICVSPK 136 +D + +SPK Sbjct: 121 DWFSRLDTLVLSPK 134 >gi|118592129|ref|ZP_01549523.1| organic-radical-activating protein [Stappia aggregata IAM 12614] gi|118435425|gb|EAV42072.1| organic-radical-activating protein [Stappia aggregata IAM 12614] Length = 242 Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G+ VF R GC+ +C +CDT + Sbjct: 8 VSEIFGPTIQGEGALIGQPTVFVRTGGCDY-----------RCSWCDTLHAVDSAHRDEW 56 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + A L++ + ++G L+GG P +Q LI K G+ A+ET G++ Sbjct: 57 CPMTPQAILMQVEILSGGNP-LTVSLSGGNPAIQPLGGLITLGRKEGYRFALETQGSLAK 115 Query: 125 P--QGIDWICVSPK 136 +D + +SPK Sbjct: 116 DWFADLDVLTLSPK 129 >gi|254700612|ref|ZP_05162440.1| Radical SAM domain protein [Brucella suis bv. 5 str. 513] gi|261751121|ref|ZP_05994830.1| radical SAM domain-containing protein [Brucella suis bv. 5 str. 513] gi|261740874|gb|EEY28800.1| radical SAM domain-containing protein [Brucella suis bv. 5 str. 513] Length = 251 Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 17 ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 64 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 65 WKPMSVEAIWHEVTTLSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVAK 124 Query: 125 P--QGIDWICVSPK 136 +D + +SPK Sbjct: 125 DWFSRLDTLVLSPK 138 >gi|150377056|ref|YP_001313652.1| radical SAM domain-containing protein [Sinorhizobium medicae WSM419] gi|150031603|gb|ABR63719.1| Radical SAM domain protein [Sinorhizobium medicae WSM419] Length = 245 Score = 42.4 bits (98), Expect = 0.041, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G VF R GC+ +C +CD+ ++ + Sbjct: 11 VSEIFGPTIQGEGVLIGLPTVFVRSGGCDY-----------RCSWCDS-LHAVESSYRHE 58 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI-- 122 ++ + +E E L+GG P +Q LI ++ G+ A+ET G+I Sbjct: 59 WHAMSTEAVWQEIVRLSRGEAVMVSLSGGNPAIQPFGDLIGRGHRNGYRFALETQGSIAR 118 Query: 123 EPPQGIDWICVSPK 136 E +D + +SPK Sbjct: 119 EWFAELDVLVLSPK 132 >gi|306843411|ref|ZP_07476012.1| Radical SAM domain protein [Brucella sp. BO1] gi|306276102|gb|EFM57802.1| Radical SAM domain protein [Brucella sp. BO1] Length = 247 Score = 42.4 bits (98), Expect = 0.042, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 13 ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 60 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 61 WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVAK 120 Query: 125 P--QGIDWICVSPK 136 +D + +SPK Sbjct: 121 DWFSRLDTLVLSPK 134 >gi|256059945|ref|ZP_05450130.1| Radical SAM domain protein [Brucella neotomae 5K33] gi|261323917|ref|ZP_05963114.1| radical SAM domain-containing protein [Brucella neotomae 5K33] gi|261299897|gb|EEY03394.1| radical SAM domain-containing protein [Brucella neotomae 5K33] Length = 251 Score = 42.4 bits (98), Expect = 0.043, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 17 ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 64 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 65 WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVAK 124 Query: 125 P--QGIDWICVSPK 136 +D + +SPK Sbjct: 125 DWFSRLDTLVLSPK 138 >gi|23502822|ref|NP_698949.1| radical activating enzyme [Brucella suis 1330] gi|62290822|ref|YP_222615.1| radical activating protein [Brucella abortus bv. 1 str. 9-941] gi|82700734|ref|YP_415308.1| proline-rich extensin:radical SAM family protein [Brucella melitensis biovar Abortus 2308] gi|161619892|ref|YP_001593779.1| radical SAM domain-containing protein [Brucella canis ATCC 23365] gi|163843996|ref|YP_001628400.1| radical SAM domain-containing protein [Brucella suis ATCC 23445] gi|225853410|ref|YP_002733643.1| radical SAM domain-containing protein [Brucella melitensis ATCC 23457] gi|254694602|ref|ZP_05156430.1| Radical SAM domain protein [Brucella abortus bv. 3 str. Tulya] gi|254696227|ref|ZP_05158055.1| Radical SAM domain protein [Brucella abortus bv. 2 str. 86/8/59] gi|254704982|ref|ZP_05166810.1| Radical SAM domain protein [Brucella suis bv. 3 str. 686] gi|254731145|ref|ZP_05189723.1| Radical SAM domain protein [Brucella abortus bv. 4 str. 292] gi|256045575|ref|ZP_05448455.1| Radical SAM domain protein [Brucella melitensis bv. 1 str. Rev.1] gi|256158470|ref|ZP_05456368.1| Radical SAM domain protein [Brucella ceti M490/95/1] gi|256253889|ref|ZP_05459425.1| Radical SAM domain protein [Brucella ceti B1/94] gi|256263110|ref|ZP_05465642.1| radical SAM domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|256370376|ref|YP_003107887.1| queuosine biosynthesis protein QueE [Brucella microti CCM 4915] gi|260169391|ref|ZP_05756202.1| queuosine biosynthesis protein QueE [Brucella sp. F5/99] gi|260546089|ref|ZP_05821829.1| radical SAM domain-containing protein [Brucella abortus NCTC 8038] gi|260562886|ref|ZP_05833372.1| radical SAM domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260567544|ref|ZP_05838014.1| radical SAM domain-containing protein [Brucella suis bv. 4 str. 40] gi|260758876|ref|ZP_05871224.1| radical SAM domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260760600|ref|ZP_05872943.1| radical SAM domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|261214926|ref|ZP_05929207.1| radical SAM domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|261221026|ref|ZP_05935307.1| radical SAM domain-containing protein [Brucella ceti B1/94] gi|261755683|ref|ZP_05999392.1| radical SAM domain-containing protein [Brucella suis bv. 3 str. 686] gi|261758913|ref|ZP_06002622.1| radical SAM domain-containing protein [Brucella sp. F5/99] gi|265991999|ref|ZP_06104556.1| radical SAM domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|265996986|ref|ZP_06109543.1| radical SAM domain-containing protein [Brucella ceti M490/95/1] gi|23348846|gb|AAN30864.1| radical activating enzyme, putative [Brucella suis 1330] gi|62196954|gb|AAX75254.1| hypothetical radical activating enzyme [Brucella abortus bv. 1 str. 9-941] gi|82616835|emb|CAJ11931.1| Proline-rich extensin:Radical SAM [Brucella melitensis biovar Abortus 2308] gi|161336703|gb|ABX63008.1| Radical SAM domain protein [Brucella canis ATCC 23365] gi|163674719|gb|ABY38830.1| Radical SAM domain protein [Brucella suis ATCC 23445] gi|225641775|gb|ACO01689.1| Radical SAM domain protein [Brucella melitensis ATCC 23457] gi|256000539|gb|ACU48938.1| queuosine biosynthesis protein QueE [Brucella microti CCM 4915] gi|260096196|gb|EEW80072.1| radical SAM domain-containing protein [Brucella abortus NCTC 8038] gi|260152902|gb|EEW87994.1| radical SAM domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260157062|gb|EEW92142.1| radical SAM domain-containing protein [Brucella suis bv. 4 str. 40] gi|260669194|gb|EEX56134.1| radical SAM domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260671032|gb|EEX57853.1| radical SAM domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260916533|gb|EEX83394.1| radical SAM domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|260919610|gb|EEX86263.1| radical SAM domain-containing protein [Brucella ceti B1/94] gi|261738897|gb|EEY26893.1| radical SAM domain-containing protein [Brucella sp. F5/99] gi|261745436|gb|EEY33362.1| radical SAM domain-containing protein [Brucella suis bv. 3 str. 686] gi|262551454|gb|EEZ07444.1| radical SAM domain-containing protein [Brucella ceti M490/95/1] gi|263003065|gb|EEZ15358.1| radical SAM domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|263093011|gb|EEZ17161.1| radical SAM domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|326409973|gb|ADZ67038.1| radical SAM domain-containing protein [Brucella melitensis M28] Length = 251 Score = 42.4 bits (98), Expect = 0.043, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 17 ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 64 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 65 WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVAK 124 Query: 125 P--QGIDWICVSPK 136 +D + +SPK Sbjct: 125 DWFSRLDTLVLSPK 138 >gi|256112302|ref|ZP_05453223.1| Radical SAM domain protein [Brucella melitensis bv. 3 str. Ether] gi|265993735|ref|ZP_06106292.1| radical SAM domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|262764716|gb|EEZ10637.1| radical SAM domain-containing protein [Brucella melitensis bv. 3 str. Ether] Length = 251 Score = 42.4 bits (98), Expect = 0.044, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 17 ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 64 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 65 WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVAK 124 Query: 125 P--QGIDWICVSPK 136 +D + +SPK Sbjct: 125 DWFSRLDTLVLSPK 138 >gi|225628173|ref|ZP_03786208.1| Radical SAM domain protein [Brucella ceti str. Cudo] gi|237816336|ref|ZP_04595329.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Brucella abortus str. 2308 A] gi|225616998|gb|EEH14045.1| Radical SAM domain protein [Brucella ceti str. Cudo] gi|237788403|gb|EEP62618.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Brucella abortus str. 2308 A] gi|326539690|gb|ADZ87905.1| radical SAM domain protein [Brucella melitensis M5-90] Length = 252 Score = 42.4 bits (98), Expect = 0.044, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 18 ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 65 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 66 WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVAK 125 Query: 125 P--QGIDWICVSPK 136 +D + +SPK Sbjct: 126 DWFSRLDTLVLSPK 139 >gi|163746924|ref|ZP_02154281.1| Radical SAM [Oceanibulbus indolifex HEL-45] gi|161380038|gb|EDQ04450.1| Radical SAM [Oceanibulbus indolifex HEL-45] Length = 235 Score = 42.4 bits (98), Expect = 0.044, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 5 IAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDS-LHAVESQYRHT 52 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + D+ + + L+GG P +Q PLI+ + A ET G+I Sbjct: 53 WAPMSSEDVWRKVRKLSGGQPLTVSLSGGNPAIQDFGPLIKMGKAADYRFACETQGSIAR 112 Query: 125 P--QGIDWICVSPK 136 P +D + +SPK Sbjct: 113 PWFADLDTLVLSPK 126 >gi|291483909|dbj|BAI84984.1| hypothetical protein BSNT_02308 [Bacillus subtilis subsp. natto BEST195] Length = 243 Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 18/156 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ Sbjct: 7 VLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAKKD 54 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122 ++ E G + ++GG P L Q+DV I+ L + A+ET GT+ Sbjct: 55 IRWMTAEEIFAELKDIGGDAFSHVTISGGNPALLKQLDV-FIELLKENNIRAALETQGTV 113 Query: 123 EPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156 ID + +SPK + Q+L + + Sbjct: 114 YQDWFTLIDDLTISPKPPSSKMVTNFQKLDHILTSL 149 >gi|315645649|ref|ZP_07898773.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Paenibacillus vortex V453] gi|315279127|gb|EFU42437.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Paenibacillus vortex V453] Length = 224 Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 15/120 (12%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GR +F R +GC+ +C +CD+ F G+ + D+ +E + Sbjct: 3 VGRKTMFVRTAGCDY-----------RCSWCDSAFT-WDGSAKDSISHMSADDIWQELYR 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + L+GG P L + L+ L++ G +AVET G+ + +D + +SPK Sbjct: 51 LGGERFDHVTLSGGNPALLSQLGSLVNELHRHGITVAVETQGSRWQDWLNEVDEVTISPK 110 >gi|254707503|ref|ZP_05169331.1| Radical SAM domain protein [Brucella pinnipedialis M163/99/10] gi|254708957|ref|ZP_05170768.1| Radical SAM domain protein [Brucella pinnipedialis B2/94] gi|256030484|ref|ZP_05444098.1| Radical SAM domain protein [Brucella pinnipedialis M292/94/1] gi|261314986|ref|ZP_05954183.1| radical SAM domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261316456|ref|ZP_05955653.1| radical SAM domain-containing protein [Brucella pinnipedialis B2/94] gi|265987526|ref|ZP_06100083.1| radical SAM domain-containing protein [Brucella pinnipedialis M292/94/1] gi|261295679|gb|EEX99175.1| radical SAM domain-containing protein [Brucella pinnipedialis B2/94] gi|261304012|gb|EEY07509.1| radical SAM domain-containing protein [Brucella pinnipedialis M163/99/10] gi|264659723|gb|EEZ29984.1| radical SAM domain-containing protein [Brucella pinnipedialis M292/94/1] Length = 251 Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 17 ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 64 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 65 WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGTLIKHGKAEGYRFALETQGSVAK 124 Query: 125 P--QGIDWICVSPK 136 +D + +SPK Sbjct: 125 DWFSRLDTLVLSPK 138 >gi|148559581|ref|YP_001259791.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Brucella ovis ATCC 25840] gi|148370838|gb|ABQ60817.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Brucella ovis ATCC 25840] Length = 247 Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 13 ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 60 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 61 WKPISVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVAK 120 Query: 125 P--QGIDWICVSPK 136 +D + +SPK Sbjct: 121 DWFSRLDTLVLSPK 134 >gi|154685784|ref|YP_001420945.1| YkvL [Bacillus amyloliquefaciens FZB42] gi|154351635|gb|ABS73714.1| YkvL [Bacillus amyloliquefaciens FZB42] Length = 243 Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 26/140 (18%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ Sbjct: 7 VLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAKKD 54 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122 D+ E G + ++GG P L Q+D LI L + G A+ET GT+ Sbjct: 55 IRWMTAEDIYRELREIGGDAFSHVTISGGNPALLKQLDA-LILLLKEHGVRAALETQGTV 113 Query: 123 EPPQGIDW------ICVSPK 136 DW + +SPK Sbjct: 114 YQ----DWFTMINDLTISPK 129 >gi|294851212|ref|ZP_06791885.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Brucella sp. NVSL 07-0026] gi|294819801|gb|EFG36800.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Brucella sp. NVSL 07-0026] Length = 280 Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 46 ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 93 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 94 WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVAK 153 Query: 125 P--QGIDWICVSPK 136 +D + +SPK Sbjct: 154 DWFSRLDTLVLSPK 167 >gi|229099948|ref|ZP_04230870.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus Rock3-29] gi|228683493|gb|EEL37449.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus Rock3-29] Length = 233 Score = 42.0 bits (97), Expect = 0.056, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 25/133 (18%) Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71 T+QGEG G+ +F R +GC+ C +CD+ F + V Q+A Sbjct: 8 TIQGEGMVIGQKTMFIRTAGCDY-----------SCSWCDSAFT---WDGSAKEQVRQMA 53 Query: 72 DLIEEQW-----ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--E 123 EE W I GE + ++GG P+L ++ L+ L + G A+ET G+ E Sbjct: 54 P--EEIWNELVEIGGEN-FSHVTISGGNPVLLKNIQFLLTVLKENGIRTAIETQGSKWQE 110 Query: 124 PPQGIDWICVSPK 136 I+ + +SPK Sbjct: 111 WLLQIEEVTISPK 123 >gi|218288587|ref|ZP_03492864.1| Radical SAM domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218241244|gb|EED08419.1| Radical SAM domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 250 Score = 42.0 bits (97), Expect = 0.058, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 53/123 (43%), Gaps = 27/123 (21%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 EIF T++GEG AG F R CNL +C +CDT + + Sbjct: 29 EIFETVEGEGTKAGFPTTFVRVFHCNL-----------RCTWCDTPYSYAPERPAFHATL 77 Query: 68 DQLADLIEE-QWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFE----IAVETNG 120 ++A +E W LTGGEPL+ LI+A+ G E + +ETNG Sbjct: 78 REIAQQVEAFGWPN-------VCLTGGEPLIHRHKSQLLIEAIA--GIEWVRDVHIETNG 128 Query: 121 TIE 123 I+ Sbjct: 129 AID 131 >gi|226314170|ref|YP_002774066.1| queuosine biosynthesis protein [Brevibacillus brevis NBRC 100599] gi|226097120|dbj|BAH45562.1| putative queuosine biosynthesis protein [Brevibacillus brevis NBRC 100599] Length = 239 Score = 42.0 bits (97), Expect = 0.059, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 20/140 (14%) Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + + EIF T+QGEG G+ +F R +GC+ +C +CD+ F Sbjct: 1 MIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCNWCDSAFT---WDG 46 Query: 62 GGRYNVDQLAD--LIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118 R + Q++ + EE G + ++GG P L + LI L + G AVET Sbjct: 47 SARDEIRQMSPEAVWEELTRLGGDRFSHVTISGGNPALLAGIGDLISLLKEHGIRTAVET 106 Query: 119 NGTIEPP--QGIDWICVSPK 136 G+ ID I +SPK Sbjct: 107 QGSKWQAWLPLIDDITLSPK 126 >gi|160942352|ref|ZP_02089660.1| hypothetical protein CLOBOL_07237 [Clostridium bolteae ATCC BAA-613] gi|158434716|gb|EDP12483.1| hypothetical protein CLOBOL_07237 [Clostridium bolteae ATCC BAA-613] Length = 305 Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 10/124 (8%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCN----LWSGREQDRLSAQCRFC-DTDFVGIQG 59 SIK + + + + H GR C+ + W RE L + C C + G Sbjct: 49 SIKPVIMYKEDDCLHCGRCITACKRGAISPENKTWINRE---LCSGCGECVNACPAGALV 105 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVE 117 KG ++ Q+ +++ T + G L+GGEPL+Q + L+QA +G+ A+E Sbjct: 106 LKGKTMSIQQVIRELKKDATTYRRSGGGITLSGGEPLMQYEFASELLQACKGQGWNTAIE 165 Query: 118 TNGT 121 T G Sbjct: 166 TTGV 169 >gi|149916377|ref|ZP_01904897.1| radical activating protein [Roseobacter sp. AzwK-3b] gi|149809831|gb|EDM69683.1| radical activating protein [Roseobacter sp. AzwK-3b] Length = 242 Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 25/171 (14%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 9 VSEIFGPTIQGEGALIGVPTVFVRTGGCDY-----------RCSWCDSLHAVDSAFRETW 57 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + A + E + ++G + L+GG P +Q +I+ + RG+ A+ET G++ Sbjct: 58 APMTPDAIMAEIEKLSGGRP-LLVSLSGGNPAIQPLGEVIRLGHTRGYGFALETQGSVAK 116 Query: 125 P--QGIDWICVSPK----------AGCDLKIKGGQELKLVFPQVNVSPENY 163 +D + +SPK A D I GQ +V V +Y Sbjct: 117 DWFSELDMLVLSPKPPSSGMEVDWAAFDACIAAGQGADMVMKIVIFDETDY 167 >gi|308173345|ref|YP_003920050.1| QueE [Bacillus amyloliquefaciens DSM 7] gi|307606209|emb|CBI42580.1| QueE [Bacillus amyloliquefaciens DSM 7] gi|328553728|gb|AEB24220.1| QueE [Bacillus amyloliquefaciens TA208] gi|328911423|gb|AEB63019.1| queuosine biosynthesis protein QueE [Bacillus amyloliquefaciens LL3] Length = 243 Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 59/140 (42%), Gaps = 26/140 (18%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ Sbjct: 7 VLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAKKD 54 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122 D+ E G + ++GG P L Q+D LI L G A+ET GT+ Sbjct: 55 IRWMTAEDIYRELREIGGDAFSHVTISGGNPALLKQLDA-LILLLKDHGVRAALETQGTV 113 Query: 123 EPPQGIDW------ICVSPK 136 DW + +SPK Sbjct: 114 YQ----DWFTMINDLTISPK 129 >gi|307943818|ref|ZP_07659162.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Roseibium sp. TrichSKD4] gi|307773448|gb|EFO32665.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Roseibium sp. TrichSKD4] Length = 247 Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 15/138 (10%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 K I EIF T+QGEG G+ VF R GC+ +C +CDT + Sbjct: 9 KSIRISEIFGPTIQGEGALVGKPTVFVRTGGCDY-----------RCSWCDT-LHAVDAE 56 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + A++ + L+GG P +Q LI +G+ A+ET G Sbjct: 57 YRHDWTPMSAAEIFTKVEELSGGIPLTVSLSGGNPAIQPLASLITLGKAKGYAFALETQG 116 Query: 121 TIEPP--QGIDWICVSPK 136 ++ +D + +SPK Sbjct: 117 SVVKDWFAELDVLTLSPK 134 >gi|303244776|ref|ZP_07331105.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1] gi|302484817|gb|EFL47752.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1] Length = 246 Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 7/119 (5%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGC--NLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF ++ GEG GR +F RF GC N E + + CR + G Sbjct: 2 ISEIFSSIMGEGKFIGRRYIFVRFKGCPLNCIYCDEHVKDNLICRVEEIPGSGEFKEYDD 61 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 + D+L D+I + + TGGEPLL D + L+ G++ +E+NG Sbjct: 62 INDNDKLIDVINK---LKTPDLFAISFTGGEPLLYADKIKEYSKILHNLGYKTHLESNG 117 >gi|108563339|ref|YP_627655.1| hypothetical protein HPAG1_0914 [Helicobacter pylori HPAG1] gi|107837112|gb|ABF84981.1| hypothetical protein HPAG1_0914 [Helicobacter pylori HPAG1] Length = 251 Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 9/130 (6%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF---CDTDFVGI 57 MKL + E F +LQGEG + G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKNIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPL----IQALNKRGF 112 K ++ LIE + +LTGGEP L + P+ ++ ++ Sbjct: 60 PKFKTSWDYYNEPKPLIERLVNLAPNYKHFDFILTGGEPSLYFNNPILISVLEHFYRQKI 119 Query: 113 EIAVETNGTI 122 + VE+NG+I Sbjct: 120 PLCVESNGSI 129 >gi|308063762|gb|ADO05649.1| hypothetical protein HPSAT_04565 [Helicobacter pylori Sat464] Length = 251 Score = 41.6 bits (96), Expect = 0.073, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 17/134 (12%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53 MKL + E F +LQGEG G+ ++F R GCNL + + L+ CD+ Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTG----CDSL 55 Query: 54 FVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQVDVPL----IQALN 108 + K ++ LIE + +T + +LTGGEP L + P+ ++ Sbjct: 56 YAVHPKFKETWDYYNEPKSLIERLEDLTPNYKNFDFILTGGEPSLYFNNPILISVLEHFY 115 Query: 109 KRGFEIAVETNGTI 122 + + VE+NG+I Sbjct: 116 HKKIPLFVESNGSI 129 >gi|15645550|ref|NP_207726.1| hypothetical protein HP0934 [Helicobacter pylori 26695] gi|2314068|gb|AAD07976.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 251 Score = 41.6 bits (96), Expect = 0.075, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 19/135 (14%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53 MKL + E F +LQGEG G+ ++F R GCNL + + L+ CD+ Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTG----CDSL 55 Query: 54 FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107 + K ++ LIE E K+ + +LTGGEP L + P+ ++ Sbjct: 56 YAVHPKFKTSWDYYNEPKPLIERLEDLAPNYKDFDF-ILTGGEPSLYFNNPILISVLEHF 114 Query: 108 NKRGFEIAVETNGTI 122 ++ + VE+NG+I Sbjct: 115 YRQKIPLCVESNGSI 129 >gi|223042809|ref|ZP_03612857.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus capitis SK14] gi|222443663|gb|EEE49760.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus capitis SK14] Length = 237 Score = 41.6 bits (96), Expect = 0.078, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 15/147 (10%) Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71 T+QGEG GR +F R +GC+ +C +CD+ F G+ + Sbjct: 13 TIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAKEDIRLLTAE 60 Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPP--QGI 128 ++ EE G + ++GG P L + L+ ++ A+ET G+ P I Sbjct: 61 EIYEELLEVGGNHFNHVTISGGNPALIKGIQDLVDLFEEKNIYTALETQGSKFQPWMTQI 120 Query: 129 DWICVSPKAGCDLKIKGGQELKLVFPQ 155 + + +SPK + L V Q Sbjct: 121 NDLTISPKPPSSMMKPNLNTLDSVIDQ 147 >gi|254444448|ref|ZP_05057924.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Verrucomicrobiae bacterium DG1235] gi|198258756|gb|EDY83064.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Verrucomicrobiae bacterium DG1235] Length = 269 Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 6/75 (8%) Query: 50 CDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQAL 107 C + + I T Y++ I+ + E V+TGGEPLL D+P L+ + Sbjct: 67 CKSQLIPIPTTDAAENYDIKDCFKFIDSRIGLVES----AVITGGEPLLHHDLPALLAHI 122 Query: 108 NKRGFEIAVETNGTI 122 KRG + ++TNGT+ Sbjct: 123 KKRGLSVKLDTNGTL 137 >gi|89097396|ref|ZP_01170285.1| radical SAM domain protein [Bacillus sp. NRRL B-14911] gi|89087692|gb|EAR66804.1| radical SAM domain protein [Bacillus sp. NRRL B-14911] Length = 241 Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 24/144 (16%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVMEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSSFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQW----ITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEI 114 T G+ + Q+ EE W G + + ++GG P L ++ LI L K ++ Sbjct: 49 T--GKELIRQMD--AEEIWNELKAIGGEGFSFVTISGGNPALLKNLDKLISLLKKENIQL 104 Query: 115 AVETNGTI--EPPQGIDWICVSPK 136 +ET G+ + ID + +SPK Sbjct: 105 CLETQGSRWQDWFYSIDQLTISPK 128 >gi|314933021|ref|ZP_07840387.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus caprae C87] gi|313654340|gb|EFS18096.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus caprae C87] Length = 237 Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%) Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71 T+QGEG GR +F R +GC+ +C +CD+ F G+ + Sbjct: 13 TIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAKEDIRLLTAE 60 Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPP--QGI 128 ++ EE G + ++GG P L + L+ ++ A+ET G+ P I Sbjct: 61 EIYEELLEVGGNHFNHVTISGGNPALIKGIQDLVDLFEEKNIYTALETQGSKFQPWMTQI 120 Query: 129 DWICVSPK 136 + + +SPK Sbjct: 121 NDLTISPK 128 >gi|188527756|ref|YP_001910443.1| hypothetical protein HPSH_04915 [Helicobacter pylori Shi470] gi|188143996|gb|ACD48413.1| hypothetical protein HPSH_04915 [Helicobacter pylori Shi470] Length = 251 Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 17/134 (12%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53 MKL + E F +LQGEG G+ ++F R GCNL + + L+ CD+ Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTG----CDSL 55 Query: 54 FVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQVDVPL----IQALN 108 + K ++ LIE + +T + +LTGGEP L + P+ ++ Sbjct: 56 YAVHPKFKETWDYYNEPQSLIERLEDLTPNYKNFDFILTGGEPSLYFNNPILISVLEHFY 115 Query: 109 KRGFEIAVETNGTI 122 + + VE+NG+I Sbjct: 116 HKKIPLFVESNGSI 129 >gi|149179805|ref|ZP_01858310.1| YkvL [Bacillus sp. SG-1] gi|148851997|gb|EDL66142.1| YkvL [Bacillus sp. SG-1] Length = 239 Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 16/140 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M+ + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MRKIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118 + + D+ EE G + ++GG P L + L+ + G + A+ET Sbjct: 49 SAKEDIRMLTALDIWEELREIGGNRFNHVTISGGNPALIAAIDDLLTVFKENGIKSALET 108 Query: 119 NGTI--EPPQGIDWICVSPK 136 G+ + ID + +SPK Sbjct: 109 QGSRWQDWFLDIDELTLSPK 128 >gi|311067888|ref|YP_003972811.1| queuosine biosynthesis enzyme [Bacillus atrophaeus 1942] gi|310868405|gb|ADP31880.1| queuosine biosynthesis enzyme [Bacillus atrophaeus 1942] Length = 243 Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 18/136 (13%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ Sbjct: 7 VLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAKKD 54 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122 D+ E G + ++GG P L Q+D I L ++ A+ET GT+ Sbjct: 55 IRWMTAEDIYSELKEIGGDAFSHVTISGGNPALLKQLD-SFITLLKEQNIRTALETQGTV 113 Query: 123 --EPPQGIDWICVSPK 136 E ID + +SPK Sbjct: 114 YQEWFTLIDDLTISPK 129 >gi|308183085|ref|YP_003927212.1| hypothetical protein HPPC_04700 [Helicobacter pylori PeCan4] gi|308065270|gb|ADO07162.1| hypothetical protein HPPC_04700 [Helicobacter pylori PeCan4] Length = 251 Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 17/134 (12%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53 MKL + E F +LQGEG G+ ++F R GCNL + + L+ CD+ Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTG----CDSL 55 Query: 54 FVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQVDVPL----IQALN 108 + K ++ LIE + +T + +LTGGEP L + P+ ++ Sbjct: 56 YAVHPKFKETWDYYNEPKSLIERLEDLTPNYKHFDFILTGGEPSLYFNNPILISVLEHFY 115 Query: 109 KRGFEIAVETNGTI 122 + + VE+NG+I Sbjct: 116 HKKIPLFVESNGSI 129 >gi|15678091|ref|NP_275205.1| molybdenum cofactor biosynthesis A (MoaA) related protein [Methanothermobacter thermautotrophicus str. Delta H] gi|2621099|gb|AAB84569.1| molybdenum cofactor biosynthesis A (MoaA) related protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 250 Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 10/97 (10%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 +CR+C F G ++ D++ADLI Q I E ++ GGEP LQ D+P + Sbjct: 48 RCRYC---FFKPSGCMN--HSPDRIADLI--QRIRDETGVERVLIAGGEPTLQEDLPELT 100 Query: 106 ALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 + F + + NGT + + W+ + DLK Sbjct: 101 EILAGDFHVTISPNGT---RRDVLWMSTFHEVHVDLK 134 >gi|23100258|ref|NP_693725.1| coenzyme PQQ synthesis [Oceanobacillus iheyensis HTE831] gi|22778490|dbj|BAC14759.1| coenzyme PQQ synthesis [Oceanobacillus iheyensis HTE831] Length = 240 Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 16/119 (13%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG GR +F R +GC+ C +CD+ F G++ Sbjct: 5 VLEIFGPTIQGEGMVIGRKTMFVRTAGCDY-----------SCSWCDSKFTW-DGSEKDS 52 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGT 121 + + ++ + G + ++GG P L Q+D L+ L++ E+A+ET G+ Sbjct: 53 IQLLEPEEVFDSLKDIGGNTFGHVTISGGNPALLKQID-GLVDLLHQHQIEVALETQGS 110 >gi|307823472|ref|ZP_07653701.1| Radical SAM domain protein [Methylobacter tundripaludum SV96] gi|307735457|gb|EFO06305.1| Radical SAM domain protein [Methylobacter tundripaludum SV96] Length = 366 Score = 41.2 bits (95), Expect = 0.091, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 13/101 (12%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 +C FC D++G K R +V LAD + E G K Y GEP+L ++ I Sbjct: 51 RCTFCAVDYIGY---KAQRLDVKILADRLAEMGRLGVKSIMYA--GEGEPMLHKEINEIV 105 Query: 106 ALN-KRGFEIAVETNGTIEPPQGID-------WICVSPKAG 138 L G +++ TNGT+ + ++ WI VS AG Sbjct: 106 RLTVDAGIDVSFTTNGTLMNSRFVEQSLPLVSWIKVSLNAG 146 >gi|228475320|ref|ZP_04060044.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus hominis SK119] gi|314936991|ref|ZP_07844338.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus hominis subsp. hominis C80] gi|228270696|gb|EEK12110.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus hominis SK119] gi|313655610|gb|EFS19355.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus hominis subsp. hominis C80] Length = 238 Score = 41.2 bits (95), Expect = 0.091, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 18/177 (10%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG GR +F R +GC+ +C +CD+ F G+ Sbjct: 7 VLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAKDD 54 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 + D+ + G + + ++GG P L + L+ ++ A+ET G+ Sbjct: 55 IELLTAQDIYDRLKEIGGNQFDHVTISGGNPALIKGIQDLVDLFEEKNIFTALETQGSKF 114 Query: 124 PP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY--IGFDFERFSLQPM 176 P + I+ + +SPK + + L V Q S N + FD E + M Sbjct: 115 QPWMRQINDLTISPKPPSSNMVPNLEILDSVIEQCIPSTLNLKVVVFDKEDYQFAKM 171 >gi|289674681|ref|ZP_06495571.1| radical SAM family protein [Pseudomonas syringae pv. syringae FF5] Length = 76 Score = 41.2 bits (95), Expect = 0.096, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 20/90 (22%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 + L D++ + RY +TGG P Sbjct: 51 -IQTLDDILGQ---VASYRPRYVCVTGGAP 76 >gi|208434836|ref|YP_002266502.1| hypothetical protein HPG27_882 [Helicobacter pylori G27] gi|208432765|gb|ACI27636.1| hypothetical protein HPG27_882 [Helicobacter pylori G27] Length = 251 Score = 41.2 bits (95), Expect = 0.097, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 19/135 (14%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53 MKL + E F +LQGEG G+ ++F R GCNL + + L+ CD+ Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTG----CDSL 55 Query: 54 FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111 + K ++ LIE E K + +LTGGEP L + P++ ++ + Sbjct: 56 YAVHPKFKTSWDYYNEPKPLIERLENLAPNYKHFDF-ILTGGEPSLYFNNPILLSVLEHF 114 Query: 112 FE----IAVETNGTI 122 + + VE+NG+I Sbjct: 115 YHKKIPLFVESNGSI 129 >gi|254690112|ref|ZP_05153366.1| Radical SAM domain protein [Brucella abortus bv. 6 str. 870] gi|256258366|ref|ZP_05463902.1| Radical SAM domain protein [Brucella abortus bv. 9 str. C68] gi|260755651|ref|ZP_05867999.1| radical SAM domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260884676|ref|ZP_05896290.1| radical SAM domain-containing protein [Brucella abortus bv. 9 str. C68] gi|297247208|ref|ZP_06930926.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Brucella abortus bv. 5 str. B3196] gi|260675759|gb|EEX62580.1| radical SAM domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260874204|gb|EEX81273.1| radical SAM domain-containing protein [Brucella abortus bv. 9 str. C68] gi|297174377|gb|EFH33724.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Brucella abortus bv. 5 str. B3196] Length = 251 Score = 41.2 bits (95), Expect = 0.098, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 17 ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 64 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 65 WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKFEGYRFALETQGSVAK 124 Query: 125 P--QGIDWICVSPK 136 +D + +SPK Sbjct: 125 DWFSRLDTLVLSPK 138 >gi|291287831|ref|YP_003504647.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Denitrovibrio acetiphilus DSM 12809] gi|290884991|gb|ADD68691.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Denitrovibrio acetiphilus DSM 12809] Length = 229 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 25/136 (18%) Query: 19 HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 + G ++ F+GCNL +CR+C + + G +++ +E + Sbjct: 17 YPGVISSVAFFNGCNL-----------RCRYCHNP--ELVNSALGENRLEEFLSSLEGKD 63 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWIC---VS 134 I G ++GGEPL D+P ++ L RGF + ++TNG+ P ++ +C ++ Sbjct: 64 IEG------VAVSGGEPLFLPDMPEFLRTLKDRGFLVKLDTNGSY--PGRLERVCGEGLA 115 Query: 135 PKAGCDLKIKGGQELK 150 DLK ++K Sbjct: 116 DFVSVDLKAFNDSDVK 131 >gi|317180219|dbj|BAJ58005.1| hypothetical protein HPF32_0423 [Helicobacter pylori F32] Length = 251 Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 21/136 (15%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF---------CD 51 MKL + E F +LQGEG G+ ++F R GCNL C+ CD Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCK------GFNCKTILYDEILMGCD 53 Query: 52 TDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQVDVPL----IQA 106 + + K ++ LIE + +T + +LTGGEP L + P+ ++ Sbjct: 54 SLYAVHPKFKETWDYYNEPKSLIERLEDLTPNYKNFDFILTGGEPSLYFNNPILISVLEH 113 Query: 107 LNKRGFEIAVETNGTI 122 + + VE+NG+I Sbjct: 114 FYHKKIPLFVESNGSI 129 >gi|313673576|ref|YP_004051687.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940332|gb|ADR19524.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Calditerrivibrio nitroreducens DSM 19672] Length = 230 Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 27/131 (20%) Query: 18 GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77 G+VA GCNL +CR+C + ++ K +++++ D I+ Sbjct: 16 NFTGKVACTVFTIGCNL-----------RCRYCYNKSLVLKTEKP--VDIEKIRDKIKTL 62 Query: 78 WITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT-------IEPPQGID 129 + + +TGGEPLL + + L GFEI ++TNGT I + ID Sbjct: 63 PL------KNIAITGGEPLLHYSLKDFLYFLKDSGFEIKLDTNGTFPERLQNILDKKLID 116 Query: 130 WICVSPKAGCD 140 ++ V KA D Sbjct: 117 YVAVDIKAFTD 127 >gi|226945710|ref|YP_002800783.1| Radical SAM protein [Azotobacter vinelandii DJ] gi|226720637|gb|ACO79808.1| Radical SAM protein [Azotobacter vinelandii DJ] Length = 193 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 21/101 (20%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 VF R +GC L +C +CDT + G V L+ ++E G Sbjct: 3 TVFVRLTGCPL-----------RCGYCDTAYAFSGGA------VLPLSVILERVASYGP- 44 Query: 84 EGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 RY +TGGEPL Q + + L++ L G+E+++ET+G + Sbjct: 45 --RYVCVTGGEPLAQPNSIELLRLLCDAGYEVSLETSGAFD 83 >gi|307308045|ref|ZP_07587763.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Sinorhizobium meliloti BL225C] gi|307319886|ref|ZP_07599309.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Sinorhizobium meliloti AK83] gi|306894426|gb|EFN25189.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Sinorhizobium meliloti AK83] gi|306901449|gb|EFN32053.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Sinorhizobium meliloti BL225C] Length = 245 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 11 VSEIFGPTIQGEGVLIGLPTVFVRSGGCDY-----------RCSWCDS-LHAVDSNYRHE 58 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + ++ +E E L+GG P +Q LI +++G+ A+ET G++ Sbjct: 59 WQTMSTEEVWQEIVRLSGGEAVMVSLSGGNPAIQPLGDLIGRGHEKGYRFALETQGSVAR 118 Query: 125 P--QGIDWICVSPK 136 +D + +SPK Sbjct: 119 DWFAALDVLVLSPK 132 >gi|237747112|ref|ZP_04577592.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes HOxBLS] gi|229378463|gb|EEO28554.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes HOxBLS] Length = 227 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 15/110 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-L 103 +CR+C + G +GGRY D LA L Q G EG V +GGEPLLQ +P Sbjct: 38 RCRYCHNRHLLPTG-EGGRYLWQDVLAWLKTRQ---GLLEG--VVFSGGEPLLQKQLPEA 91 Query: 104 IQALNKRGFEIAVETNGTIEPPQG-----IDWICVSPKAGCD--LKIKGG 146 L+++GFE+A+ T+G I+W+ + KA D +I GG Sbjct: 92 ADQLHRQGFEVALHTSGVYPERLAKVLPLIEWVGLDIKAPFDEYREITGG 141 >gi|222082946|ref|YP_002542311.1| organic-radical-activating protein [Agrobacterium radiobacter K84] gi|221727625|gb|ACM30714.1| organic-radical-activating protein [Agrobacterium radiobacter K84] Length = 279 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G VF R GC+ +C +CDT + + Sbjct: 45 VSEIFGPTIQGEGILIGLPTVFVRTGGCDY-----------RCSWCDT-LHAVDSDYRDQ 92 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + + ++ ++ + L+GG P +Q PLI + G+ A+ET G++ Sbjct: 93 WQPMSVDEIWQDVIRLSGGKPLAVSLSGGNPAIQPLGPLIARGHGEGYSFALETQGSVAK 152 Query: 125 P--QGIDWICVSPK 136 +D + +SPK Sbjct: 153 DWFADLDTLVLSPK 166 >gi|18311650|ref|NP_558317.1| coenzyme PQQ synthesis protein, conjectural [Pyrobaculum aerophilum str. IM2] gi|18159047|gb|AAL62499.1| coenzyme PQQ synthesis protein, conjectural [Pyrobaculum aerophilum str. IM2] Length = 222 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 11/49 (22%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF 54 + EIF +LQGEG + GR AVF R +GC + +C +CDT + Sbjct: 9 VLEIFASLQGEGINLGRPAVFVRLAGCPI-----------RCIYCDTKY 46 >gi|317182232|dbj|BAJ60016.1| hypothetical protein HPF57_0942 [Helicobacter pylori F57] Length = 251 Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 19/135 (14%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53 MKL + E F +LQGEG G+ ++F R GCNL + + L+ CD+ Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTG----CDSL 55 Query: 54 FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107 + K ++ LIE E K + +LTGGEP L + P+ ++ Sbjct: 56 YAVHPKFKETWDYYNEPKSLIERLEDLAPNYKHFDF-ILTGGEPSLYFNNPILISVLEHF 114 Query: 108 NKRGFEIAVETNGTI 122 + + VE+NG+I Sbjct: 115 YHKKIPLFVESNGSI 129 >gi|308062249|gb|ADO04137.1| hypothetical protein HPCU_04900 [Helicobacter pylori Cuz20] Length = 251 Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 19/135 (14%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53 MKL + E F +LQGEG G+ ++F R GCNL + + L+ CD+ Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTG----CDSL 55 Query: 54 FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107 + K ++ LIE E K + +LTGGEP L + P+ ++ Sbjct: 56 YAVHPKFKETWDYYNEPKSLIERLEDLAPNYKHFDF-ILTGGEPSLYFNNPILISVLEHF 114 Query: 108 NKRGFEIAVETNGTI 122 + + VE+NG+I Sbjct: 115 YHKKIPLFVESNGSI 129 >gi|295091670|emb|CBK77777.1| glycerol dehydratase, cobalamin-independent, small subunit [Clostridium cf. saccharolyticum K10] Length = 305 Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 4/107 (3%) Query: 19 HAGRVAVFCRFSGCNLWSGREQDR-LSAQCRFCDTDF-VGIQGTKGGRYNVDQLADLIEE 76 H GR A CR + + +R C C G KG + V QL +++ Sbjct: 63 HCGRCAAACRRKAISFDNKTFINREFCTGCGECANACPAGALVVKGKKMTVQQLIRELKK 122 Query: 77 QWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121 T + G L+GGEPL+Q + L++A +G++ A+ET G Sbjct: 123 DATTYRRSGGGITLSGGEPLVQYEFAAELLKACQSQGWDTAIETTGA 169 >gi|242372943|ref|ZP_04818517.1| organic radical-activating protein [Staphylococcus epidermidis M23864:W1] gi|242349427|gb|EES41028.1| organic radical-activating protein [Staphylococcus epidermidis M23864:W1] Length = 237 Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%) Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71 T+QGEG GR +F R +GC+ +C +CD+ F G+ + Sbjct: 13 TIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAKEDIRLLSAE 60 Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPP--QGI 128 ++ EE G + ++GG P L + L+ ++ A+ET G+ P I Sbjct: 61 EIYEELREVGGDNFNHVTISGGNPALIKGIQDLVDLFEEKNIYTALETQGSKFQPWMTQI 120 Query: 129 DWICVSPK 136 + + +SPK Sbjct: 121 NDLTISPK 128 >gi|296329700|ref|ZP_06872185.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674097|ref|YP_003865769.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. spizizenii str. W23] gi|296153198|gb|EFG94062.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412341|gb|ADM37460.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. spizizenii str. W23] Length = 243 Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 18/156 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ Sbjct: 7 VLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAKKD 54 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122 ++ E G + ++GG P L Q+D I+ L + A+ET GT+ Sbjct: 55 IRWMTAEEIFAELKDIGGDAFSHVTISGGNPALLKQLDA-FIELLKENNIRAALETQGTV 113 Query: 123 EPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156 ID + +SPK + Q+L + + Sbjct: 114 YQDWFTLIDDLTISPKPPSSKMVTNFQKLDHILTSL 149 >gi|332158894|ref|YP_004424173.1| hypothetical protein PNA2_1254 [Pyrococcus sp. NA2] gi|331034357|gb|AEC52169.1| hypothetical protein PNA2_1254 [Pyrococcus sp. NA2] Length = 254 Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 32/136 (23%) Query: 6 IKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-FVGIQG 59 + E+F + QGEGG GR +F RF+GC+L +C +CD+ F+ Sbjct: 6 LAEVFNSWQGEGGSVPGSAFGRRQIFVRFAGCDL-----------RCFYCDSSQFLSPLN 54 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVL-------------TGGEPLLQVD--VPLI 104 K R ++ + E + E V+ TGGEP LQ+ L+ Sbjct: 55 VKTWRVEIEPFSGKFEYKKNPASVEEVVKVVLSLDTGDIHSISYTGGEPTLQIKGLRILM 114 Query: 105 QALNKRGFEIAVETNG 120 + GF+ +ET+G Sbjct: 115 DRMKSLGFDNFLETHG 130 >gi|16078438|ref|NP_389257.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. subtilis str. 168] gi|221309238|ref|ZP_03591085.1| hypothetical protein Bsubs1_07606 [Bacillus subtilis subsp. subtilis str. 168] gi|221313566|ref|ZP_03595371.1| hypothetical protein BsubsN3_07547 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318488|ref|ZP_03599782.1| hypothetical protein BsubsJ_07481 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322761|ref|ZP_03604055.1| hypothetical protein BsubsS_07587 [Bacillus subtilis subsp. subtilis str. SMY] gi|321315129|ref|YP_004207416.1| queuosine biosynthesis enzyme [Bacillus subtilis BSn5] gi|81341926|sp|O31677|QUEE_BACSU RecName: Full=7-carboxy-7-deazaguanine synthase; Short=CDG synthase; AltName: Full=Queuosine biosynthesis protein queE gi|2633745|emb|CAB13247.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. subtilis str. 168] gi|320021403|gb|ADV96389.1| queuosine biosynthesis enzyme [Bacillus subtilis BSn5] Length = 243 Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 18/156 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ Sbjct: 7 VLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAKKD 54 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122 ++ E G + ++GG P L Q+D I+ L + A+ET GT+ Sbjct: 55 IRWMTAEEIFAELKDIGGDAFSHVTISGGNPALLKQLDA-FIELLKENNIRAALETQGTV 113 Query: 123 EPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156 ID + +SPK + Q+L + + Sbjct: 114 YQDWFTLIDDLTISPKPPSSKMVTNFQKLDHILTSL 149 >gi|195952719|ref|YP_002121009.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932331|gb|ACG57031.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 358 Score = 40.4 bits (93), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/113 (22%), Positives = 54/113 (47%), Gaps = 17/113 (15%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 +GR+ ++ + CNL C FC + + + ++ + + D++++ Sbjct: 21 SGRIVIWNIINSCNL-----------SCIFCYSS--AKKAKQPSYFDKNNIKDIVKK--- 64 Query: 80 TGEKEGRYCVLTGGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQGIDWI 131 + ++ VL+GGEPLL D+ + + L + G +++ TNG + I+ I Sbjct: 65 LSDLNTKFVVLSGGEPLLYDDIYYVSELLREHGINVSLSTNGLLIDNDNIELI 117 >gi|296877199|ref|ZP_06901239.1| pyruvate formate-lyase activating enzyme [Streptococcus parasanguinis ATCC 15912] gi|296431719|gb|EFH17526.1| pyruvate formate-lyase activating enzyme [Streptococcus parasanguinis ATCC 15912] Length = 258 Score = 40.4 bits (93), Expect = 0.17, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 59/143 (41%), Gaps = 13/143 (9%) Query: 9 IFLTLQGEGGHAG---RVAVFCRFSGCNL---W-SGREQDRLSAQCRFCDTDFVGIQGTK 61 I +Q H G R VF + GC L W S E R++ + GT Sbjct: 7 IIFNIQHFSIHDGPGIRTTVFLK--GCPLRCPWCSNPESQRMNPEPML--DAVTKAPGTT 62 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119 G VD++ D + + E+ G L+GGE Q + L++A +RG A+ET Sbjct: 63 GQEKTVDEIIDEVMKDIDFYEESGGGMTLSGGEIFAQFEFAKALLKAAKERGLHTAIETT 122 Query: 120 GTIEPPQGIDWICVSPKAGCDLK 142 +E + ID I DLK Sbjct: 123 AFVEHEKFIDLIQYVDFIYTDLK 145 >gi|317178717|dbj|BAJ56505.1| hypothetical protein HPF30_0408 [Helicobacter pylori F30] Length = 251 Score = 40.4 bits (93), Expect = 0.17, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 19/135 (14%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53 MKL + E F +LQGEG G+ ++F R GCNL + + L+ CD+ Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDETLTG----CDSL 55 Query: 54 FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107 + K + LIE E K + +LTGGEP L + P+ ++ Sbjct: 56 YAVHPKFKETWDYYHEPKSLIERLEDLAPNYKNFDF-ILTGGEPSLYFNNPILISVLEHF 114 Query: 108 NKRGFEIAVETNGTI 122 + + VE+NG+I Sbjct: 115 YHKKIPLFVESNGSI 129 >gi|323465121|gb|ADX77274.1| coenzyme PQQ synthesis-like protein [Staphylococcus pseudintermedius ED99] Length = 237 Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust. Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 40/209 (19%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDF-----------RCSWCDSKFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL----LQVDVPLIQALNKRGFEIA 115 + + + +++ + G + ++GG P LQ V L +A + R A Sbjct: 49 SMKDDIEMMEAEEILAQLRNIGGNRFNHVTISGGNPALIKGLQSFVDLCEANDIR---TA 105 Query: 116 VETNGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY-------IGF 166 +ET G+ P + I+ + +SPK + L V Q+++S N + Sbjct: 106 LETQGSQFKPWMRQINDLTLSPKPPSSGMQQNLPRLDEVIEQLDISRINLKVVVFDDADY 165 Query: 167 DFER----------FSLQPMDGPFLEENT 185 DF + F LQ + P+LEE+ Sbjct: 166 DFAKMIHQRYPDIPFYLQ-VGNPYLEEHV 193 >gi|317009590|gb|ADU80170.1| radical SAM domain-containing protein [Helicobacter pylori India7] Length = 251 Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 17/134 (12%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MKL + E F +LQGEG G+ ++F R GCNL + + F D G Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSC----KGFNCKTPFNDEILTGCDSL 55 Query: 61 KGGRYNVDQLAD-------LIEEQWITGEKEGRY-CVLTGGEPLLQVDVPL----IQALN 108 + D LIE + +LTGGEP L + P+ ++ Sbjct: 56 YAVHPKFKETWDYYNDPKPLIERLVNLAPSYKDFDFILTGGEPSLYFNNPILLSVLEHFY 115 Query: 109 KRGFEIAVETNGTI 122 ++ + VE+NG+I Sbjct: 116 RKKIPLFVESNGSI 129 >gi|317177720|dbj|BAJ55509.1| hypothetical protein HPF16_0912 [Helicobacter pylori F16] Length = 251 Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 19/135 (14%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53 MKL + E F +LQGEG G+ ++F R GCNL + + L+ CD+ Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTG----CDSL 55 Query: 54 FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107 + K ++ LIE E K + +LTGGEP L + P+ ++ Sbjct: 56 YAVHPKFKETWDYYNEPKSLIERLEDLAPNYKHFDF-ILTGGEPSLYFNNPILISVLEHF 114 Query: 108 NKRGFEIAVETNGTI 122 + + VE+NG+I Sbjct: 115 YHKKIPLFVESNGSI 129 >gi|261839719|gb|ACX99484.1| hypothetical protein HPKB_0901 [Helicobacter pylori 52] Length = 251 Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 19/135 (14%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53 MKL + E F +LQGEG G+ ++F R GCNL + + L+ CD+ Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTG----CDSL 55 Query: 54 FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107 + K ++ LIE E K + +LTGGEP L + P+ ++ Sbjct: 56 YAVHPKFKETWDYYNEPKSLIERLEDLAPNYKHFDF-ILTGGEPSLYFNNPILISVLEHF 114 Query: 108 NKRGFEIAVETNGTI 122 + + VE+NG+I Sbjct: 115 YHKKIPLFVESNGSI 129 >gi|296272038|ref|YP_003654669.1| radical SAM domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296096213|gb|ADG92163.1| Radical SAM domain protein [Arcobacter nitrofigilis DSM 7299] Length = 249 Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 20/134 (14%) Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNL----WSGREQDRLSAQCRFCDTDFVGI 57 + + EIF T+QGEG + G ++F RF CN ++ + + CD+ + Sbjct: 1 MLEVNEIFGPTIQGEGKYVGNPSIFIRFGKCNFRCEGFAVEYETPSGVKKCSCDSFYAVD 60 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEK--EGRY---CVLTGGEPLLQVDVPLIQALNK--- 109 K DQ + + + I K E Y V+TGGEPLL Q + K Sbjct: 61 PAFK------DQWHKMNKNEIINQVKKLEPSYKVDIVITGGEPLLYWKDEEFQEILKYYI 114 Query: 110 -RGFEIAVETNGTI 122 G+++ +ETNG++ Sbjct: 115 SNGYKVTIETNGSL 128 >gi|150018872|ref|YP_001311126.1| glycyl-radical activating family protein [Clostridium beijerinckii NCIMB 8052] gi|149905337|gb|ABR36170.1| glycyl-radical enzyme activating protein family [Clostridium beijerinckii NCIMB 8052] Length = 306 Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 10/122 (8%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNL----WSGREQDRLSAQC-RFCDTDFVGIQGT 60 IK + + H GR C+ ++ + RE +C C T + + Sbjct: 51 IKPVIMYQSANCIHCGRCISACKIGAISVNNKGFINREICTACGECSNVCPTSSLVL--- 107 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118 KG + ++Q+ +++ I + G L+GGEPL+Q D L +A +G+ A+ET Sbjct: 108 KGKKMTIEQVIKELKKDAINYRRSGGGITLSGGEPLVQSDFSKELFKACKAQGWHTAIET 167 Query: 119 NG 120 G Sbjct: 168 TG 169 >gi|317012742|gb|ADU83350.1| hypothetical protein HPLT_04740 [Helicobacter pylori Lithuania75] Length = 251 Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 19/135 (14%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53 MKL + E F +LQGEG G+ ++F R GCNL + + L+ CD+ Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILNDEILTG----CDSL 55 Query: 54 FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107 + K + LIE E K + +LTGGEP L + P+ ++ Sbjct: 56 YAVHPKFKETWDYYNDPKPLIERLENLAPNYKHFDF-ILTGGEPSLYFNNPILISVLEHF 114 Query: 108 NKRGFEIAVETNGTI 122 ++ + VE+NG+I Sbjct: 115 YRKKIPLCVESNGSI 129 >gi|207091722|ref|ZP_03239509.1| hypothetical protein HpylHP_00921 [Helicobacter pylori HPKX_438_AG0C1] Length = 251 Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 19/135 (14%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53 MKL + E F +LQGEG G+ ++F R GCNL + + L+ CD+ Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTG----CDSL 55 Query: 54 FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107 + K + LIE E K + +LTGGEP L + P+ ++ Sbjct: 56 YAVHPKFKTSWDYYNDPKPLIERLEDLAPNYKHFDF-ILTGGEPSLYFNNPILISVLEHF 114 Query: 108 NKRGFEIAVETNGTI 122 + + VE+NG+I Sbjct: 115 YHKKIPLFVESNGSI 129 >gi|194337298|ref|YP_002019092.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194309775|gb|ACF44475.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 223 Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 49/117 (41%), Gaps = 21/117 (17%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +I EIF ++QGE AG F R +GC C CDT + G K G Sbjct: 7 NISEIFHSIQGESSFAGWPCAFIRLAGCG-----------HGCIGCDTAYAEHDGIKLGI 55 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 V Q A I +TGGEPLLQ V L++ L ++ +ET G Sbjct: 56 EVVVQRALAFRAPLIE---------VTGGEPLLQPAVYSLMRQLCDLEQKVLLETGG 103 >gi|254361906|ref|ZP_04978039.1| hypothetical protein MHA_1513 [Mannheimia haemolytica PHL213] gi|153093447|gb|EDN74435.1| hypothetical protein MHA_1513 [Mannheimia haemolytica PHL213] Length = 55 Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 11/51 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF 54 + I EIF +LQGEG + G A+F RF CNL C +CDT++ Sbjct: 10 FPIVEIFESLQGEGFNTGMPAIFVRFGKCNL-----------TCPWCDTNY 49 >gi|36958586|gb|AAQ87054.1| ExsD protein [Sinorhizobium fredii NGR234] Length = 245 Score = 40.0 bits (92), Expect = 0.21, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 23/138 (16%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 11 VSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDS----LHAVDSA- 54 Query: 65 YNVDQLADLIEEQW--ITGEKEGRYCV--LTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 Y + A +E W +T G+ + L+GG P +Q LI + G+ A+ET G Sbjct: 55 YRDEWRAMTTDEVWSEVTQLSGGQPVMVSLSGGNPAIQPFGALIARGHAEGYRFALETQG 114 Query: 121 TIEPP--QGIDWICVSPK 136 ++ +D + +SPK Sbjct: 115 SVARDWFAELDMLVLSPK 132 >gi|227820048|ref|YP_002824019.1| radical SAM domain protein [Sinorhizobium fredii NGR234] gi|227339047|gb|ACP23266.1| radical SAM domain protein [Sinorhizobium fredii NGR234] Length = 242 Score = 40.0 bits (92), Expect = 0.21, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 23/138 (16%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 8 VSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDS----LHAVDSA- 51 Query: 65 YNVDQLADLIEEQW--ITGEKEGRYCV--LTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 Y + A +E W +T G+ + L+GG P +Q LI + G+ A+ET G Sbjct: 52 YRDEWRAMTTDEVWSEVTQLSGGQPVMVSLSGGNPAIQPFGALIARGHAEGYRFALETQG 111 Query: 121 TIEPP--QGIDWICVSPK 136 ++ +D + +SPK Sbjct: 112 SVARDWFAELDMLVLSPK 129 >gi|315586878|gb|ADU41259.1| radical SAM domain protein [Helicobacter pylori 35A] Length = 251 Score = 40.0 bits (92), Expect = 0.22, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 19/135 (14%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53 MKL + E F +LQGEG G+ ++F R GCNL + + L+ CD+ Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTG----CDSL 55 Query: 54 FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107 + K ++ LIE E K + +LTGGEP L + P+ ++ Sbjct: 56 YAVHPKFKETWDYYNEPKSLIERLEDLAPNYKNFDF-ILTGGEPSLYFNNPILISVLEHF 114 Query: 108 NKRGFEIAVETNGTI 122 + + VE+NG+I Sbjct: 115 YHKKIPLFVESNGSI 129 >gi|261838307|gb|ACX98073.1| hypothetical protein KHP_0871 [Helicobacter pylori 51] Length = 251 Score = 40.0 bits (92), Expect = 0.22, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 19/135 (14%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53 MKL + E F +LQGEG G+ ++F R GCNL + + L+ CD+ Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTG----CDSL 55 Query: 54 FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107 + K ++ LIE E K + +LTGGEP L + P+ ++ Sbjct: 56 YAVHPKFKETWDYYNEPKSLIERLEDLAPNYKNFDF-ILTGGEPSLYFNNPILISVLEHF 114 Query: 108 NKRGFEIAVETNGTI 122 + + VE+NG+I Sbjct: 115 YHKKIPLFVESNGSI 129 >gi|257052674|ref|YP_003130507.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Halorhabdus utahensis DSM 12940] gi|256691437|gb|ACV11774.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Halorhabdus utahensis DSM 12940] Length = 228 Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 19/105 (18%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGG--RYNVDQLADLIEEQ 77 GRVA +GCNL +C +C + + + G + D+ L++++ Sbjct: 16 GRVACAVFTAGCNL-----------RCPYCHNPELIEADSKHAGASTLSADEFFALLDDR 64 Query: 78 WITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 + V+TGGEP L D+P + + RGF++ ++TNGT Sbjct: 65 EAVLDG----VVITGGEPTLHRDLPRFVSRIADRGFDVKLDTNGT 105 >gi|220931944|ref|YP_002508852.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Halothermothrix orenii H 168] gi|219993254|gb|ACL69857.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Halothermothrix orenii H 168] Length = 231 Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 24/116 (20%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA-DLIEEQWITGEKEGRYCV 89 GCNL +C +C + K N+D ++ DL+ E +K Sbjct: 26 GCNL-----------RCPYCHNSGL----VKNNNKNIDFISLDLLFEFLRRRKKLIDGVC 70 Query: 90 LTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT-------IEPPQGIDWICVSPKA 137 +TGGEP LQ + P I+ + K GF+I ++TNGT + ID+I + KA Sbjct: 71 ITGGEPTLQTGLEPFIRKIKKMGFKIKLDTNGTKPDLINKLVKENLIDYIAMDIKA 126 >gi|217033986|ref|ZP_03439409.1| hypothetical protein HP9810_883g56 [Helicobacter pylori 98-10] gi|216943619|gb|EEC23067.1| hypothetical protein HP9810_883g56 [Helicobacter pylori 98-10] Length = 251 Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 19/135 (14%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53 MKL + E F +LQGEG G+ ++F R GCNL + + L+ CD+ Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILNDEILTG----CDSL 55 Query: 54 FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107 + K ++ LIE E K + +LTGGEP L + P+ ++ Sbjct: 56 YAVHPKFKETWDYYNEPKSLIERLEDLAPNYKNFDF-ILTGGEPSLYFNNPILISVLEHF 114 Query: 108 NKRGFEIAVETNGTI 122 + + VE+NG+I Sbjct: 115 YHKKIPLFVESNGSI 129 >gi|254779534|ref|YP_003057640.1| hypothetical protein HELPY_0917 [Helicobacter pylori B38] gi|254001446|emb|CAX29441.1| Conserved hypothetical protein [Helicobacter pylori B38] Length = 251 Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 19/135 (14%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53 MKL + E F +LQGEG G+ ++F R GCNL + + L+ CD+ Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILNDEILTG----CDSL 55 Query: 54 FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107 + K + LIE E K + +LTGGEP L + P+ ++ Sbjct: 56 YAVHPKFKETWDYYNDPKPLIERLEDLAPNYKHFDF-ILTGGEPSLYFNNPILISVLEHF 114 Query: 108 NKRGFEIAVETNGTI 122 ++ + VE+NG+I Sbjct: 115 YRKKIPLFVESNGSI 129 >gi|15611935|ref|NP_223586.1| hypothetical protein jhp0868 [Helicobacter pylori J99] gi|4155435|gb|AAD06440.1| putative [Helicobacter pylori J99] Length = 251 Score = 39.7 bits (91), Expect = 0.28, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 17/134 (12%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF-------CDTD 53 MKL + E F +LQGEG G+ ++F R GCNL + + F CD+ Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNL----SCKGFNCKTLFNDEILTGCDSL 55 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQALNKRGF 112 + K ++ LIE + +LTGGEP L + P++ ++ + + Sbjct: 56 YAVHPKFKTSWDYYNEPKPLIERLVNLAPNYKDFDFILTGGEPSLYFNNPILLSVLEHFY 115 Query: 113 E----IAVETNGTI 122 + VE+NG+I Sbjct: 116 HKKIPLFVESNGSI 129 >gi|126651679|ref|ZP_01723882.1| radical SAM domain protein [Bacillus sp. B14905] gi|126591628|gb|EAZ85734.1| radical SAM domain protein [Bacillus sp. B14905] Length = 242 Score = 39.7 bits (91), Expect = 0.28, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 24/144 (16%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F Sbjct: 1 MSKVPVIEIFGPTIQGEGMVVGQKTMFVRTAGCDY-----------SCSWCDSAFT---W 46 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEG----RYCVLTGGEPLLQVDV-PLIQALNKRGFEI 114 G++ + Q+ E W ++ G + ++GG P L ++ LI L + +I Sbjct: 47 DGSGKHLIVQMT--AGEIWSELKRLGGHGFSFVTISGGNPALYPNLEALIAILKENDIKI 104 Query: 115 AVETNGTI--EPPQGIDWICVSPK 136 VET G+ ID + +SPK Sbjct: 105 GVETQGSRWQNWMYDIDELTISPK 128 >gi|308184717|ref|YP_003928850.1| hypothetical protein HPSJM_04750 [Helicobacter pylori SJM180] gi|308060637|gb|ADO02533.1| hypothetical protein HPSJM_04750 [Helicobacter pylori SJM180] Length = 251 Score = 39.7 bits (91), Expect = 0.28, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 23/137 (16%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW------SGREQDRLSAQCRFCDTDF 54 MKL + E F +LQGEG G+ ++F R GCNL D + C Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVH 59 Query: 55 VGIQGTKGGRYN-----VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL----IQ 105 Q T YN +++L +L K+ + +LTGGEP L + P+ ++ Sbjct: 60 PKFQ-TSWDYYNEPKPLIERLVNL-----APSYKDFDF-ILTGGEPSLYFNNPILLSVLE 112 Query: 106 ALNKRGFEIAVETNGTI 122 + + + VE+NG+I Sbjct: 113 HFHHKKIPLFVESNGSI 129 >gi|325996217|gb|ADZ51622.1| Queuosine biosynthesis protein [Helicobacter pylori 2018] gi|325997811|gb|ADZ50019.1| Queuosine biosynthesis protein [Helicobacter pylori 2017] Length = 251 Score = 39.7 bits (91), Expect = 0.28, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 17/134 (12%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF-------CDTD 53 MKL + E F +LQGEG G+ ++F R GCNL + + F CD+ Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSC----KGFNCKTLFNDEILTGCDSL 55 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQALNKRGF 112 + K ++ LIE + +LTGGEP L + P++ ++ + + Sbjct: 56 YAVHPKFKTSWDYYNEPKPLIERLVNLAPNYKDFDFILTGGEPSLYFNNPILLSVLEHFY 115 Query: 113 E----IAVETNGTI 122 + VE+NG+I Sbjct: 116 HKKIPLFVESNGSI 129 >gi|319891709|ref|YP_004148584.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus pseudintermedius HKU10-03] gi|317161405|gb|ADV04948.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus pseudintermedius HKU10-03] Length = 237 Score = 39.7 bits (91), Expect = 0.28, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 22/166 (13%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDF-----------RCSWCDSKFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL----LQVDVPLIQALNKRGFEIA 115 + + + +++ + G + ++GG P LQ V L +A + R A Sbjct: 49 SMKDDIEMMEAEEILAQLRNIGGNRFNHVTISGGNPALIKGLQSFVDLCEANDIR---TA 105 Query: 116 VETNGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159 +ET G+ P + I+ + +SPK + L V Q+++S Sbjct: 106 LETQGSQFKPWMRQINDLTLSPKPPSSGMQQNLPRLDEVIEQLDIS 151 >gi|254459192|ref|ZP_05072614.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Campylobacterales bacterium GD 1] gi|207084085|gb|EDZ61375.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Campylobacterales bacterium GD 1] Length = 234 Score = 39.7 bits (91), Expect = 0.29, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 17/100 (17%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +A FSGCN+ +C +C I + G Y +D++ + + + Sbjct: 30 HLACIVWFSGCNM-----------RCDYCYNK--AIVFSNSGSYTIDEVLEFLHSRVNLL 76 Query: 82 EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 E VL+GGE V +A+ K GF+I ++TNGT Sbjct: 77 EA----VVLSGGEASSHDLVEFCKAVKKLGFKIKLDTNGT 112 >gi|307637623|gb|ADN80073.1| Queuosine Biosynthesis protein [Helicobacter pylori 908] Length = 251 Score = 39.7 bits (91), Expect = 0.29, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 17/134 (12%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF-------CDTD 53 MKL + E F +LQGEG G+ ++F R GCNL + + F CD+ Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSC----KGFNCKTLFNDEILTGCDSL 55 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQALNKRGF 112 + K ++ LIE + +LTGGEP L + P++ ++ + + Sbjct: 56 YAVHPKFKTSWDYYNEPKPLIERLVNLAPNYKDFDFILTGGEPSLYFNNPILLSVLEHFY 115 Query: 113 E----IAVETNGTI 122 + VE+NG+I Sbjct: 116 HKKIPLFVESNGSI 129 >gi|16264809|ref|NP_437601.1| hypothetical protein SM_b20938 [Sinorhizobium meliloti 1021] gi|2808502|emb|CAA12532.1| ExsD protein [Sinorhizobium meliloti] gi|15140947|emb|CAC49461.1| hypothetical conserved protein [Sinorhizobium meliloti 1021] Length = 245 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 11 VSEIFGPTIQGEGVLIGLPTVFVRSGGCDY-----------RCSWCDS-LHAVDSNYRHE 58 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + ++ +E E L+GG P +Q LI ++ G+ A+ET G++ Sbjct: 59 WQTMSTEEVWQEIVRLSGGEAVMVSLSGGNPAIQPLGDLIGRGHENGYRFALETQGSVAR 118 Query: 125 P--QGIDWICVSPK 136 +D + +SPK Sbjct: 119 DWFANLDVLVLSPK 132 >gi|159905256|ref|YP_001548918.1| radical SAM domain-containing protein [Methanococcus maripaludis C6] gi|159886749|gb|ABX01686.1| Radical SAM domain protein [Methanococcus maripaludis C6] Length = 242 Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 32/147 (21%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I+E+F ++ GEG G+ +F RF C L C +CD GG Sbjct: 2 IREVFSSIMGEGKFIGKRFIFVRFKECPL-----------DCIYCDE-----PNAPGGTA 45 Query: 66 NVDQLA-------------DLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKR 110 V++++ +LIE + TGGEPLL + + L ++ Sbjct: 46 RVEEISGSGEFTEYLELDHELIETIEKLRTPDLFAVSFTGGEPLLYSNKIKKYSEILKQK 105 Query: 111 GFEIAVETNGTI-EPPQGIDWICVSPK 136 G++ +E+NG E G D+ + K Sbjct: 106 GYKTFLESNGMFPEKLDGYDYASIDIK 132 >gi|330684947|gb|EGG96626.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus epidermidis VCU121] Length = 237 Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 16/140 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + E+F T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEVFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118 + + ++ + G + ++GG P L + L+ + + A+ET Sbjct: 49 SAKEDIQLMSAEEIYNKLREVGGDNFNHVTISGGNPALIKGIQDLVDLFEEHHIQTALET 108 Query: 119 NGTIEPP--QGIDWICVSPK 136 G+ P ID + +SPK Sbjct: 109 QGSKFQPWMTQIDDLTISPK 128 >gi|329766234|ref|ZP_08257792.1| radical SAM domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137293|gb|EGG41571.1| radical SAM domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 237 Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 17/92 (18%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 EIF +++GEG G +F R +GC C +CDT + G Y++ Sbjct: 7 EIFTSVEGEGILYGTKTLFVRLAGCPF-----------TCFYCDTK-ESLPLDSGQEYSI 54 Query: 68 DQLADLIEEQWITGEKEGRYCV-LTGGEPLLQ 98 ++ LI+ K Y V TGG+PL+Q Sbjct: 55 EEACTLIDSNL----KNQTYKVNFTGGDPLIQ 82 >gi|56963892|ref|YP_175623.1| organic radical activating enzyme [Bacillus clausii KSM-K16] gi|56910135|dbj|BAD64662.1| organic radical activating enzyme [Bacillus clausii KSM-K16] Length = 217 Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust. Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 17/119 (14%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 G+ +F R GC+ +CR+CD+ F K + +++ + ++ Sbjct: 3 GQKTMFVRTGGCDY-----------RCRWCDSAFTWDGSEKSEPLSAEEIIERLDS---L 48 Query: 81 GEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP--PQGIDWICVSPK 136 E + ++GG P + + L+ LN++G A+ET G+I +D + VSPK Sbjct: 49 CENGYSHVTISGGNPAIHKGIGELVALLNEKGVATAIETQGSIFQCWINRVDEVTVSPK 107 >gi|254476144|ref|ZP_05089530.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Ruegeria sp. R11] gi|214030387|gb|EEB71222.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Ruegeria sp. R11] Length = 235 Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 54/134 (40%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 5 IAEIFGPTIQGEGALIGEPTVFVRTGGCDY-----------RCSWCDS-LHAVDSKFRDT 52 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + D+ E + L+GG P +Q LI + G+ A ET G+I Sbjct: 53 WMPMTTRDVWAEVTHLSGGQPLTVSLSGGNPAIQDFAELIAMGKEAGYRFACETQGSINQ 112 Query: 125 P--QGIDWICVSPK 136 +D + +SPK Sbjct: 113 AWFSKLDTLVLSPK 126 >gi|220929087|ref|YP_002505996.1| radical SAM protein [Clostridium cellulolyticum H10] gi|219999415|gb|ACL76016.1| Radical SAM domain protein [Clostridium cellulolyticum H10] Length = 438 Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 8/91 (8%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R + C C D I N++Q+ ++ E R V+TGGEPL++ D+ Sbjct: 114 RCNLNCHHCYNDSHAINYEP----NLEQIHSVVNE---LSSTRLRNIVVTGGEPLMREDL 166 Query: 102 -PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 +I L F + + TNGT+ Q I W+ Sbjct: 167 KTIIGWLRPLTFNLTLATNGTLINEQNIPWL 197 >gi|224437923|ref|ZP_03658865.1| radical SAM family protein [Helicobacter cinaedi CCUG 18818] gi|313144366|ref|ZP_07806559.1| pyruvate formate-lyase activating enzyme [Helicobacter cinaedi CCUG 18818] gi|313129397|gb|EFR47014.1| pyruvate formate-lyase activating enzyme [Helicobacter cinaedi CCUG 18818] Length = 363 Score = 39.3 bits (90), Expect = 0.37, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 13/101 (12%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 +C FC D++G + K +VD A I + G K + GEP L D+P + Sbjct: 51 RCTFCGVDYMGYKSIK---IDVDVYARAIADMGRLGVKSVMFA--GEGEPFLHKDLPQMV 105 Query: 106 ALNK-RGFEIAVETNGTIEPPQGI-------DWICVSPKAG 138 AL+K G ++ + TN + + + WI VS AG Sbjct: 106 ALSKDSGVDVGITTNFVMANEKNLPTILKYASWIKVSLNAG 146 >gi|205356588|ref|ZP_03223351.1| hypothetical protein Cj8421_0161 [Campylobacter jejuni subsp. jejuni CG8421] gi|205345593|gb|EDZ32233.1| hypothetical protein Cj8421_0161 [Campylobacter jejuni subsp. jejuni CG8421] Length = 224 Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 7/103 (6%) Query: 28 RFSGCNLWSGREQDRLSAQCRF---CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 RF+GCN ++S + CDT Y +L++ + Sbjct: 2 RFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKLKQDF 61 Query: 85 GRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNGTIE 123 V+TGGEPL+ + P IQ L K FEI E+NG+IE Sbjct: 62 DPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFESNGSIE 104 >gi|239636677|ref|ZP_04677679.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus warneri L37603] gi|239598032|gb|EEQ80527.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus warneri L37603] Length = 237 Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 16/140 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + E+F T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEVFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118 + + ++ + G + ++GG P L + L+ + + A+ET Sbjct: 49 SAKEDIQLMSAEEIYNKLREIGGDNFNHVTISGGNPALIKGIQDLVDLFEEHHIQTALET 108 Query: 119 NGTIEPP--QGIDWICVSPK 136 G+ P ID + +SPK Sbjct: 109 QGSKFQPWMTQIDDLTISPK 128 >gi|219855994|ref|YP_002473116.1| hypothetical protein CKR_2651 [Clostridium kluyveri NBRC 12016] gi|219569718|dbj|BAH07702.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 311 Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 7/108 (6%) Query: 21 GRVAVFCRFS-GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQ 77 GR C + G NL E+++ + C C T+ K YN +Q+ +IE+Q Sbjct: 71 GRCVQVCPYGVGINLNQRLEREKCKS-CGLC-TEVCTTNSRKNLIYHYNSEQILKIIEKQ 128 Query: 78 WITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE 123 I G +GGE LQ D+ L+ L + ++A+ET+G + Sbjct: 129 RIFYRYSGGGVTFSGGEATLQTDILRELVNKLYDKAIDLAIETSGHFQ 176 >gi|210135123|ref|YP_002301562.1| radical SAM domain-containing protein [Helicobacter pylori P12] gi|210133091|gb|ACJ08082.1| radical SAM domain-containing protein [Helicobacter pylori P12] Length = 251 Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 19/135 (14%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53 MKL + E F +LQGEG G+ ++F R GCNL + + L+ CD+ Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILNDEILTG----CDSL 55 Query: 54 FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107 + K + LIE E K + +LTGGEP L + P+ ++ Sbjct: 56 YAVHPKFKETWDYYNDPKPLIERLEDLAPNYKHFDF-ILTGGEPSLYFNNPILISVLEHF 114 Query: 108 NKRGFEIAVETNGTI 122 ++ + VE+NG+I Sbjct: 115 YRQKIPLFVESNGSI 129 >gi|34419518|ref|NP_899531.1| conserved hypothetical protein [Vibrio phage KVP40] gi|34333199|gb|AAQ64354.1| conserved hypothetical protein [Vibrio phage KVP40] Length = 293 Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 36/151 (23%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNL---------------WSGREQDR---------- 42 E+F ++QGEG + G+ ++F RF GCNL W +D Sbjct: 7 EMFYSIQGEGKYTGQASLFFRFWGCNLECHGFGQEDPTNKDTWVLDFKDYDPKANNVTSV 66 Query: 43 --LSAQCRFCDTDFVGIQ--GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 L R CD+ + + + V + + + E+ + V+TGGEP++ Sbjct: 67 EDLPVWTRGCDSSYTWAKKYAHLASKSEVADVCEAMLEKLPNRVWGDIHWVITGGEPMMN 126 Query: 99 VDVPLIQALN------KRGFEIAVETNGTIE 123 +I+ +N + +ETNGT E Sbjct: 127 -QAQIIEMMNYFIKIDNYPKHVTIETNGTRE 156 >gi|116696219|ref|YP_841795.1| heme d1 biosynthesis protein (NirJ) [Ralstonia eutropha H16] gi|113530718|emb|CAJ97065.1| heme d1 biosynthesis protein (NirJ) [Ralstonia eutropha H16] Length = 387 Score = 38.9 bits (89), Expect = 0.46, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 27/109 (24%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLI 74 AG V ++ CNL CR C DTDF G T +DQL D Sbjct: 24 AGPVVIWNLIRRCNL-----------NCRHCYATSADTDFKGELDTAEALRVLDQLRDAR 72 Query: 75 EEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTI 122 I L+GGEPLL+ D+ I A + GF +++ +NGT+ Sbjct: 73 VPALI----------LSGGEPLLRPDLYEIAARARALGFHLSLSSNGTL 111 >gi|161527549|ref|YP_001581375.1| radical SAM domain-containing protein [Nitrosopumilus maritimus SCM1] gi|160338850|gb|ABX11937.1| Radical SAM domain protein [Nitrosopumilus maritimus SCM1] Length = 237 Score = 38.9 bits (89), Expect = 0.46, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 17/92 (18%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 EIF +++GEG G +F R +GC C +CDT + G Y++ Sbjct: 7 EIFTSVEGEGILYGTKTLFVRLAGCPF-----------TCFYCDTK-ESLPLDSGTEYSI 54 Query: 68 DQLADLIEEQWITGEKEGRYCV-LTGGEPLLQ 98 + LI+ K Y V TGG+PL+Q Sbjct: 55 EDANQLIDSNL----KNQTYKVNFTGGDPLIQ 82 >gi|153955615|ref|YP_001396380.1| glycyl radical activating protein [Clostridium kluyveri DSM 555] gi|146348473|gb|EDK35009.1| Predicted glycyl radical enzyme activator [Clostridium kluyveri DSM 555] Length = 301 Score = 38.9 bits (89), Expect = 0.49, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 7/105 (6%) Query: 21 GRVAVFCRFS-GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQ 77 GR C + G NL E+++ + C C T+ K YN +Q+ +IE+Q Sbjct: 61 GRCVQVCPYGVGINLNQRLEREKCKS-CGLC-TEVCTTNSRKNLIYHYNSEQILKIIEKQ 118 Query: 78 WITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 I G +GGE LQ D+ L+ L + ++A+ET+G Sbjct: 119 RIFYRYSGGGVTFSGGEATLQTDILRELVNKLYDKAIDLAIETSG 163 >gi|71282516|ref|YP_270877.1| putative heme biosynthesis protein [Colwellia psychrerythraea 34H] gi|71148256|gb|AAZ28729.1| putative heme biosynthesis protein [Colwellia psychrerythraea 34H] Length = 410 Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust. Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 19/158 (12%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSG-CNLWSGREQDRLSAQCRFC-----DTDFVG 56 ++ I ++ TL + V + G +W+ R + QC+ C D DF Sbjct: 1 MFRISQLLKTLHDDMAELKPVKASRKMKGPVVIWNLIR--RCNLQCKHCYSTSLDIDFKD 58 Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIA 115 T+ + +D L +L+GGEPLL+ D+ + + ++GF +A Sbjct: 59 ELSTEQVKTTIDDLK----------VAHVPVLILSGGEPLLRPDIYEITEYAKQKGFYLA 108 Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153 + TNGT+ I+ I + + I G +E F Sbjct: 109 LSTNGTLINEDNIEAIKAAEYQYVGISIDGLEEFHDEF 146 >gi|222055504|ref|YP_002537866.1| radical SAM protein [Geobacter sp. FRC-32] gi|221564793|gb|ACM20765.1| Radical SAM domain protein [Geobacter sp. FRC-32] Length = 291 Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 13/95 (13%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI-QALNKRGFEIAVETN 119 +G ++ ++ ++++ +I G R VLTGGEP ++ DV I Q K GF + + TN Sbjct: 31 EGSEASLAEIKHVLDKLYIAG---LRRVVLTGGEPTVREDVADIAQYAKKIGFAVYLSTN 87 Query: 120 GTI------EPPQGIDWICVS---PKAGCDLKIKG 145 G + E + WI +S P A D I G Sbjct: 88 GLLLKQIWKEISPYLSWISISLDAPSAELDKIITG 122 >gi|283488054|gb|ADB24720.1| NirJ [Methylomonas sp. 16a] Length = 379 Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147 +L+GGEPLL D+ P+ Q + GF +A+ +NGT+ I+ I + + G + Sbjct: 77 ILSGGEPLLHPDIFPISQRASDMGFYVALSSNGTLIDKNNIEQIAAIDYQYIGVSLDGMR 136 Query: 148 ELKLVFPQ 155 E F Q Sbjct: 137 EAHDKFRQ 144 >gi|297624979|ref|YP_003706413.1| molybdenum cofactor biosynthesis protein A [Truepera radiovictrix DSM 17093] gi|297166159|gb|ADI15870.1| molybdenum cofactor biosynthesis protein A [Truepera radiovictrix DSM 17093] Length = 336 Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 6/79 (7%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 +C +CD +G G +V +A ++E G + R+ TGGEPLL+ ++P + Sbjct: 37 RCTYCDPLGLG-HADPVGTLSVQDVAHVLEAAVGLGMRSVRF---TGGEPLLRRELPEMI 92 Query: 106 ALNKR-GFE-IAVETNGTI 122 A KR G E +A+ TN T+ Sbjct: 93 ACAKRLGVEDVAITTNATL 111 >gi|317014342|gb|ADU81778.1| hypothetical protein HPGAM_04815 [Helicobacter pylori Gambia94/24] Length = 251 Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 17/134 (12%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MKL + E F +LQGEG G+ ++F R GCNL + + F D G Sbjct: 1 MKL-PVVESFFSLQGEGQRIGKPSLFLRLGGCNLSC----KGFNCKTLFNDEILTGCDSL 55 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYC--------VLTGGEPLLQVDVPLIQALNKRGF 112 D E E+ +LTGGEP L + P++ ++ + + Sbjct: 56 YAVHPKFQTSWDYYSEPKPLIERLVNLAPNYKDFDLILTGGEPSLYFNNPILLSVLEHFY 115 Query: 113 E----IAVETNGTI 122 + VE+NG+I Sbjct: 116 HKKIPLFVESNGSI 129 >gi|332180934|gb|AEE16622.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Treponema brennaborense DSM 12168] Length = 252 Score = 38.5 bits (88), Expect = 0.62, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 33/147 (22%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQ-- 77 GRVA GCNL +C +C +T+ V + Q+ +E++ Sbjct: 20 GRVAAALFLGGCNL-----------RCPYCYNTELVTGNALPEDAVSASQVLAHLEKRKN 68 Query: 78 WITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPK 136 +TG V++GGEPLL V LI G++I ++TNGT+ P+ + + SP Sbjct: 69 VLTG------FVISGGEPLLSPVTEYLITQARALGYKIKLDTNGTL--PERLSHLLQSPA 120 Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENY 163 D V V SPE Y Sbjct: 121 LCPD----------FVALDVKTSPEKY 137 >gi|327311467|ref|YP_004338364.1| putative molybdenum cofactor biosynthesis protein A [Thermoproteus uzoniensis 768-20] gi|326947946|gb|AEA13052.1| putative molybdenum cofactor biosynthesis protein A [Thermoproteus uzoniensis 768-20] Length = 341 Score = 38.5 bits (88), Expect = 0.66, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 6/76 (7%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104 C FC F G G N D L++ G ++ + LTGGEPLL+ D V ++ Sbjct: 51 SCIFCH--FEGQLRGVGRLLNADDYGFLVDVLSKVGVRDYK---LTGGEPLLRSDIVDIV 105 Query: 105 QALNKRGFEIAVETNG 120 + +N+ G EI++ TNG Sbjct: 106 RKMNRDGVEISMTTNG 121 >gi|17986377|ref|NP_539011.1| radical SAM domain protein ExsD [Brucella melitensis bv. 1 str. 16M] gi|17981967|gb|AAL51275.1| exsd protein [Brucella melitensis bv. 1 str. 16M] Length = 243 Score = 38.5 bits (88), Expect = 0.66, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ + +CD + ++ Sbjct: 9 ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RWAWCD-NLHAVESRFRHE 56 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 57 WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVAK 116 Query: 125 P--QGIDWICVSPK 136 +D + +SPK Sbjct: 117 DWFSRLDTLVLSPK 130 >gi|225569138|ref|ZP_03778163.1| hypothetical protein CLOHYLEM_05218 [Clostridium hylemonae DSM 15053] gi|225161937|gb|EEG74556.1| hypothetical protein CLOHYLEM_05218 [Clostridium hylemonae DSM 15053] Length = 230 Score = 38.5 bits (88), Expect = 0.66, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 16/104 (15%) Query: 19 HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 + G+VA +GCN +C FC + + K ++++ ++++ Sbjct: 14 YPGKVACTIFTAGCNF-----------RCPFCHNASLVVDTYKNEEITQEEVSAFLKKRM 62 Query: 79 ITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 G +G CV TGGEPL+Q D+ P ++ + + G+ + ++TNG+ Sbjct: 63 --GVLDG-VCV-TGGEPLIQSDIEPFLRQIKEMGYAVKLDTNGS 102 >gi|187251593|ref|YP_001876075.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Elusimicrobium minutum Pei191] gi|186971753|gb|ACC98738.1| Anaerobic ribonucleoside-triphosphate reductase activating protein [Elusimicrobium minutum Pei191] Length = 205 Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 18/114 (15%) Query: 19 HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 + G V+ GCN+ +C +C + YN D++ +E++ Sbjct: 14 YPGLVSAVIFMQGCNM-----------RCPYCHNPELVYPNMLLEPYNEDEVFAFLEKR- 61 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI 131 G +G V+TGGEP + D+P + + G+++ ++TNGT+ P I+ I Sbjct: 62 -KGALDG--VVVTGGEPAVHADLPEFLAKIKALGYKVKLDTNGTM--PDMIEKI 110 >gi|317484368|ref|ZP_07943287.1| glycyl-radical enzyme activating family protein [Bilophila wadsworthia 3_1_6] gi|316924376|gb|EFV45543.1| glycyl-radical enzyme activating family protein [Bilophila wadsworthia 3_1_6] Length = 312 Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 G VDQ+ +E+ + + G L+GGEPL+ D+ PL++ R + A+ET Sbjct: 113 GENKTVDQILKEVEKDALFYARSGGGMTLSGGEPLMHADIALPLLREARHRRIKTAIETC 172 Query: 120 GTI 122 G I Sbjct: 173 GCI 175 >gi|301057214|ref|ZP_07198343.1| radical SAM domain protein [delta proteobacterium NaphS2] gi|300448665|gb|EFK12301.1| radical SAM domain protein [delta proteobacterium NaphS2] Length = 341 Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146 +LTGGEPLL+ D+ L +A + G + + TNGT+ PQ I + S + I G Sbjct: 50 ILTGGEPLLREDIFDLAKAGTEMGLRMVMATNGTLMTPQRIAQMKASGIKRLSISIDGA 108 >gi|315637210|ref|ZP_07892430.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Arcobacter butzleri JV22] gi|315478482|gb|EFU69195.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Arcobacter butzleri JV22] Length = 225 Score = 38.1 bits (87), Expect = 0.79, Method: Compositional matrix adjust. Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 6/78 (7%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103 + +C +C D + ++ G+Y+ +++ D ++++ VL+GGE + VP Sbjct: 31 NMRCSYCYND--NLVFSRIGKYSHNEVLDFLKKRVTLLSA----VVLSGGEATIHNLVPF 84 Query: 104 IQALNKRGFEIAVETNGT 121 + + K G++I ++TNGT Sbjct: 85 CKEIKKLGYKIKLDTNGT 102 >gi|193216092|ref|YP_001997291.1| radical SAM domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193089569|gb|ACF14844.1| Radical SAM domain protein [Chloroherpeton thalassium ATCC 35110] Length = 343 Score = 38.1 bits (87), Expect = 0.80, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 13/89 (14%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE--GRYCVLTGGEPLLQV 99 R +A+C+FCD K Y L D+ +Q +T K ++ TGGEPLL Sbjct: 12 RCNAECKFCDI------WKKPSIYA--SLPDI--QQNLTDLKRLGVQFVDFTGGEPLLHK 61 Query: 100 DVPLIQALNKR-GFEIAVETNGTIEPPQG 127 D+P I + K+ GF ++ TN + P Q Sbjct: 62 DLPEILSFAKQLGFFTSITTNTLLYPKQA 90 >gi|303327027|ref|ZP_07357469.1| putative pyruvate formate-lyase 1 activating enzyme [Desulfovibrio sp. 3_1_syn3] gi|302863015|gb|EFL85947.1| putative pyruvate formate-lyase 1 activating enzyme [Desulfovibrio sp. 3_1_syn3] Length = 322 Score = 38.1 bits (87), Expect = 0.84, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 G + NVD + +E+ + G L+GGEPLLQ D + L++ R + AVET Sbjct: 123 GKKRNVDDVLSSVEQDAAFYSRSGGGMTLSGGEPLLQADFALALLRQARVRRLKTAVETC 182 Query: 120 GTI 122 G + Sbjct: 183 GMV 185 >gi|157737484|ref|YP_001490167.1| radical SAM domain-containing protein [Arcobacter butzleri RM4018] gi|157699338|gb|ABV67498.1| radical SAM domain protein [Arcobacter butzleri RM4018] Length = 234 Score = 38.1 bits (87), Expect = 0.85, Method: Compositional matrix adjust. Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 6/78 (7%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103 + +C +C D + ++ G+Y+ +++ D ++++ VL+GGE + VP Sbjct: 40 NMRCSYCYND--NLVFSRIGKYSHNEVLDFLKKRVTLLSA----VVLSGGEATIHNLVPF 93 Query: 104 IQALNKRGFEIAVETNGT 121 + + K G++I ++TNGT Sbjct: 94 CKEIKKLGYKIKLDTNGT 111 >gi|282163323|ref|YP_003355708.1| probable molybdenum cofactor biosynthesis protein A [Methanocella paludicola SANAE] gi|282155637|dbj|BAI60725.1| probable molybdenum cofactor biosynthesis protein A [Methanocella paludicola SANAE] Length = 312 Score = 38.1 bits (87), Expect = 0.86, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 13/101 (12%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 +R + QC +C + G G+ GG VD++A L+ G ++ +GGEPLL+ D Sbjct: 22 NRCNLQCIYCHNE--GESGS-GGEITVDEIARLVRIATKYGVDRVKF---SGGEPLLRTD 75 Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQ-------GIDWICVS 134 + I +I++ TNGT+ P+ G+D + +S Sbjct: 76 LEDILRALPPLKDISLTTNGTLLAPRAKGLKEAGLDRVNIS 116 >gi|150402999|ref|YP_001330293.1| radical SAM domain-containing protein [Methanococcus maripaludis C7] gi|150034029|gb|ABR66142.1| Radical SAM domain protein [Methanococcus maripaludis C7] Length = 242 Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 33/139 (23%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I+E+F ++ GEG G+ +F RF C L C +CD T GG Sbjct: 2 IREVFSSIMGEGKFIGKRFIFVRFKECPL-----------DCIYCDE-----PNTPGGTA 45 Query: 66 NVDQLA-------------DLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKR 110 V++++ +LIE + TGGEPLL + + L + Sbjct: 46 RVEEVSGSGDFTEYLELENELIEIIEKLRTPDLFAVSFTGGEPLLYPNKIKQYSEILKHK 105 Query: 111 GFEIAVETNGTIEPPQGID 129 G++ +E+NG P+ +D Sbjct: 106 GYKTFLESNGMF--PERLD 122 >gi|13474824|ref|NP_106394.1| hypothetical protein mll5796 [Mesorhizobium loti MAFF303099] gi|14025580|dbj|BAB52180.1| mll5796 [Mesorhizobium loti MAFF303099] Length = 245 Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 19/136 (13%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G VF R GC+ +C +CD+ + R Sbjct: 11 VSEIFGPTIQGEGVLIGLPTVFVRTGGCDY-----------RCSWCDSLHAV---DRRFR 56 Query: 65 YNVDQLADLIEEQWITGEKEGRYCV--LTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + ++ Q + G+ + L+GG P +Q LI + G+ A+ET G++ Sbjct: 57 HDWEMMSSDAVWQKVIALSSGQPVMVSLSGGNPAIQPLGQLIDRGHGEGYRFALETQGSV 116 Query: 123 EPP--QGIDWICVSPK 136 +D + +SPK Sbjct: 117 SKQWFADLDVLVLSPK 132 >gi|315658944|ref|ZP_07911811.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus lugdunensis M23590] gi|315496068|gb|EFU84396.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus lugdunensis M23590] Length = 238 Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 18/177 (10%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG GR +F R +GC+ +C +CD+ F G+ + Sbjct: 7 VLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAKDQ 54 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 + ++ E+ G + ++GG P L + L+ A+ET G+ Sbjct: 55 IQLMSATEIYEKLIEIGGDCFDHVTISGGNPALIKGIQDLVDLFETEHIATALETQGSKF 114 Query: 124 PP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY--IGFDFERFSLQPM 176 P I+ + +SPK + L V Q N + FD E ++ M Sbjct: 115 QPWMTQINDLTISPKPPSSSMTPNLEVLDQVIAQCVPQSLNLKVVVFDDEDYAFAKM 171 >gi|219853188|ref|YP_002467620.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c] gi|219547447|gb|ACL17897.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c] Length = 399 Score = 37.7 bits (86), Expect = 1.00, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + C C + G + T G + +I++ G + TGGEPL++ D Sbjct: 49 DRCNLSCNHC-YNQSGPERTTEGELTTAEALKVIDDLADMGVP---LILFTGGEPLMRAD 104 Query: 101 V-PLIQALNKRGFEIAVETNGTIEPP 125 + L Q RG ++A+ TNGT+ P Sbjct: 105 IWDLAQHARNRGLKMALSTNGTLITP 130 >gi|237749263|ref|ZP_04579743.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes OXCC13] gi|229380625|gb|EEO30716.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes OXCC13] Length = 227 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 11/101 (10%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LI 104 +CR+C + ++ + G+Y+ + +E + G +G V +GGEPLLQ +P I Sbjct: 38 RCRYCHNRHL-LESGEAGQYSWNDTFRWLETR--RGLLDG--VVFSGGEPLLQKQLPEAI 92 Query: 105 QALNKRGFEIAVETNGTIEPPQG-----IDWICVSPKAGCD 140 +++ GFE+A+ T+G I+W+ + KA D Sbjct: 93 GQIHQNGFEVALHTSGVYPERLSKVLPLIEWVGLDIKAPFD 133 >gi|320527904|ref|ZP_08029071.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Solobacterium moorei F0204] gi|320131700|gb|EFW24263.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Solobacterium moorei F0204] Length = 383 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 20/106 (18%) Query: 19 HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNV-DQLADLIEE 76 + G+VA +GCN+ +C FC+ D V I + RY +++ + + Sbjct: 162 YPGKVAATIYTAGCNM-----------KCPFCNQKDLVFI--PEKYRYIAPEEILSYLNQ 208 Query: 77 QWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 + +G +G V++GGEPLLQ + +P I+ + + G+ + ++TNGT Sbjct: 209 R--SGLLDG--VVISGGEPLLQEELIPFIRQIKELGYAVKLDTNGT 250 >gi|15891589|ref|NP_357261.1| radical activating protein [Agrobacterium tumefaciens str. C58] gi|15160025|gb|AAK90046.1| radical activating protein [Agrobacterium tumefaciens str. C58] Length = 251 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 57/136 (41%), Gaps = 19/136 (13%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CDT + Sbjct: 17 ISEIFGPTIQGEGPLIGLPTVFVRTGGCDY-----------RCSWCDT-LHAVDSEYRDT 64 Query: 65 YNVDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + +E + G G L+GG P +Q LI G+ A+ET G+I Sbjct: 65 WKPMSVEAIWQE--VLGLSGGMPLTVSLSGGNPAIQPLGTLIAKGQGEGYRFALETQGSI 122 Query: 123 EPP--QGIDWICVSPK 136 +D + +SPK Sbjct: 123 AKDWFADLDHLVLSPK 138 >gi|242242077|ref|ZP_04796522.1| organic radical-activating protein [Staphylococcus epidermidis W23144] gi|242234462|gb|EES36774.1| organic radical-activating protein [Staphylococcus epidermidis W23144] Length = 237 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 16/140 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118 + + ++ E G + ++GG P L + L+ ++ A+ET Sbjct: 49 SAKEDIKLMTAEEIYEALLEIGGHRFNHVTISGGNPALIKGIQELVNLFEEKHIYTALET 108 Query: 119 NGTIEPP--QGIDWICVSPK 136 G+ ID + +SPK Sbjct: 109 QGSRFQSWMTQIDDLTISPK 128 >gi|126465976|ref|YP_001041085.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Staphylothermus marinus F1] gi|126014799|gb|ABN70177.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Staphylothermus marinus F1] Length = 267 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 19/99 (19%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCV 89 GCNL +C FC + I RY ++++L + +E I + Y Sbjct: 43 GCNL-----------KCPFCHNWMLAINHPSTCRYLDINKLIEELESARILID----YLH 87 Query: 90 LTGGEPLLQ---VDVPLIQALNKRGFEIAVETNGTIEPP 125 +TGGEPL+Q ++ L A N G I++ TN T+ P Sbjct: 88 VTGGEPLIQYRELEKILSLAKNNIGVNISINTNFTLYKP 126 >gi|217968079|ref|YP_002353585.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Dictyoglomus turgidum DSM 6724] gi|217337178|gb|ACK42971.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Dictyoglomus turgidum DSM 6724] Length = 228 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 21/138 (15%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LI 104 +C FC + I K G+Y+ + I E+ K + V+TGGEP LQ D+P + Sbjct: 30 RCPFCHNPEL-ISQRKKGQYS----EEFILEEIDRRRKLIKGVVITGGEPTLQEDLPSFL 84 Query: 105 QALNKRGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG--------GQEL 149 L KR + ++TNG+ I + +D++ + K K + L Sbjct: 85 FKLKKRRLLVKLDTNGSNPKMLVEIIKSKLLDYVAMDFKTSIPKYHKAIGLSERETSKYL 144 Query: 150 KLVFPQVNVSPENYIGFD 167 K +F + + EN + F+ Sbjct: 145 KNIFESLRILKENNVRFE 162 >gi|319401217|gb|EFV89432.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus epidermidis FRI909] Length = 237 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 16/140 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118 + + ++ E G + ++GG P L + L+ ++ A+ET Sbjct: 49 SAKEDIKLMTAEEIYEALLEIGGHRFNHVTISGGNPALIKGIQELVDLFEEKHIYTALET 108 Query: 119 NGTIEPP--QGIDWICVSPK 136 G+ ID + +SPK Sbjct: 109 QGSRFQSWMTQIDDLTISPK 128 >gi|116750480|ref|YP_847167.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116699544|gb|ABK18732.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB] Length = 377 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 9/55 (16%) Query: 89 VLTGGEPLLQVDVPLIQAL-NKRGFEIAVETNGTIEPPQ--------GIDWICVS 134 +LTGGEPLL+ D+ I A N +GF + + NGT+ P+ GI I VS Sbjct: 79 ILTGGEPLLRPDIFEIAAYGNAKGFRMTMAVNGTLLTPETAKRMIETGIQRISVS 133 >gi|326797578|ref|YP_004315397.1| molybdenum cofactor biosynthesis protein A [Sphingobacterium sp. 21] gi|326548342|gb|ADZ76727.1| molybdenum cofactor biosynthesis protein A [Sphingobacterium sp. 21] Length = 329 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 7/57 (12%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 + +DQLA + + +T + LTGGEPL++ D P +I+ L+K E+ + TNG Sbjct: 49 HEIDQLAKIFVDHGVTKIR------LTGGEPLVRKDAPAIIEILSKLPVELTMTTNG 99 >gi|281355888|ref|ZP_06242381.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Victivallis vadensis ATCC BAA-548] gi|281317257|gb|EFB01278.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Victivallis vadensis ATCC BAA-548] Length = 238 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 16/104 (15%) Query: 19 HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 + G++ GCNL +C FC + + + +E + Sbjct: 14 YPGKIGCIVFTGGCNL-----------RCPFCHNPCLVFDPASQPKVTEKEFFGFLERR- 61 Query: 79 ITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 G EG V++GGEP+LQ D VP ++ + K GF V++NGT Sbjct: 62 -KGLLEG--VVISGGEPMLQPDLVPFVERIRKSGFLAKVDSNGT 102 >gi|20804218|emb|CAD31244.1| HYPOTHETICAL CONSERVED PROTEIN [Mesorhizobium loti R7A] Length = 245 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 19/136 (13%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G VF R GC+ +C +CD+ + R Sbjct: 11 VSEIFGPTIQGEGVLIGLPTVFVRTGGCDY-----------RCSWCDSLHAV---DRRFR 56 Query: 65 YNVDQLADLIEEQWITGEKEGRYCV--LTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + ++ Q + G+ + L+GG P +Q LI + G+ A+ET G++ Sbjct: 57 HDWEMMSPDAVWQKVIALSGGQPVMVSLSGGNPAIQPLSQLIDRGHGEGYRFALETQGSV 116 Query: 123 EPP--QGIDWICVSPK 136 +D + +SPK Sbjct: 117 SKQWFADLDVLVLSPK 132 >gi|164688694|ref|ZP_02212722.1| hypothetical protein CLOBAR_02340 [Clostridium bartlettii DSM 16795] gi|164602170|gb|EDQ95635.1| hypothetical protein CLOBAR_02340 [Clostridium bartlettii DSM 16795] Length = 380 Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 13/110 (11%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR-----YCVLTGGEPLLQ 98 + C+ C + K GR E+WI+ +E + + ++TGGEPLL Sbjct: 36 NMDCKMCYVKMTKSEVDKVGRLRT-------VEEWISIAEEAKDAGMLFLLITGGEPLLY 88 Query: 99 VDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147 L L K G I++ TN T+ + D+ P + ++ + GG Sbjct: 89 KGFKELYLKLVKMGLIISINTNATLIDEEMADFFAKYPPSRLNITLYGGS 138 >gi|118577062|ref|YP_876805.1| organic radical activating enzyme [Cenarchaeum symbiosum A] gi|118195583|gb|ABK78501.1| organic radical activating enzyme [Cenarchaeum symbiosum A] Length = 238 Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 20/99 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 ++LY EIF +++GEG G +F R +GC C +CDT+ + Sbjct: 4 VRLY---EIFTSIEGEGVLFGTKTLFVRLAGCPFG-----------CYYCDTE-EALPAD 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQ 98 G + +++ +I++ + Y V TGGEPL+Q Sbjct: 49 SGEEHTMEEACRMIDDAI----QPNTYKVNFTGGEPLVQ 83 >gi|22299396|ref|NP_682643.1| moaA/nifB/pqqE family protein [Thermosynechococcus elongatus BP-1] gi|22295579|dbj|BAC09405.1| moaA/nifB/pqqE family protein [Thermosynechococcus elongatus BP-1] Length = 335 Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 40/93 (43%), Gaps = 26/93 (27%) Query: 42 RLSAQCRFCD---------TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 R +A+C FCD DF IQ N+ L L G K Y TG Sbjct: 13 RCNARCHFCDIWALEPGKEADFSTIQT------NLRDLKRL-------GVK---YVDFTG 56 Query: 93 GEPLLQVDVPLIQALNKR-GFEIAVETNGTIEP 124 GEPLL+ D P I KR GF ++ TN + P Sbjct: 57 GEPLLRADAPAIYREAKRLGFITSMTTNTILYP 89 >gi|307693876|ref|ZP_07636113.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Ruminococcaceae bacterium D16] Length = 230 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 31/146 (21%) Query: 19 HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 + G+VA GC+ +C FC + + + LA L + Q Sbjct: 14 YPGKVACTVFLGGCDF-----------RCPFCHNGELVLSPAPAEMNQEELLAFLKKRQ- 61 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKA 137 G +G +TGGEPLL+ D+P L++A+ G+ + ++TNG+ P+A Sbjct: 62 --GLLDG--VCITGGEPLLRPDLPQLLEAVKALGYPVKLDTNGS------------HPRA 105 Query: 138 GCDLKIKGGQELKLVFPQVNVSPENY 163 DL + + + V V SPE Y Sbjct: 106 LVDLVER--KLVDYVAMDVKNSPERY 129 >gi|150389760|ref|YP_001319809.1| glycyl-radical activating family protein [Alkaliphilus metalliredigens QYMF] gi|149949622|gb|ABR48150.1| glycyl-radical enzyme activating protein family [Alkaliphilus metalliredigens QYMF] Length = 301 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 YN +Q+ +IE+Q I G +GGE LQ D+ L+ L + ++A+ET+G Sbjct: 106 YNTEQILKMIEKQEIFYRYSGGGVTFSGGEAALQADILRDLVCKLYDKAIDLAIETSG 163 >gi|319643534|ref|ZP_07998157.1| pyruvate formate-lyase 1 activating enzyme [Bacteroides sp. 3_1_40A] gi|317384939|gb|EFV65895.1| pyruvate formate-lyase 1 activating enzyme [Bacteroides sp. 3_1_40A] Length = 242 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 20/105 (19%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADL-IEEQWI 79 R+ VF + GCN +C +C + D + +G + +D++ + + ++ Sbjct: 19 RLVVFLQ--GCNF-----------RCLYCANPDTIDTKG-ESTETAIDEIVHMAVSQKAF 64 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 G+K G +GGEP LQ +PL Q L ++ I ++TNG+I Sbjct: 65 FGKKGG--VTFSGGEPTLQAKALIPLFQRLKEQNIHICIDTNGSI 107 >gi|1684728|emb|CAA98151.1| NirJ protein [Pseudomonas stutzeri] Length = 393 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 86 RYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134 R +L+GGEPLL+ D+ L +GF +A+ TNGT+ I+ I + Sbjct: 78 RVLILSGGEPLLRADIFQLADYARDKGFFVALSTNGTLIDESNIERIAAA 127 >gi|237727146|ref|ZP_04557627.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D4] gi|229434002|gb|EEO44079.1| pyruvate formate-lyase activating enzyme [Bacteroides dorei 5_1_36/D4] Length = 242 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 20/105 (19%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADL-IEEQWI 79 R+ VF + GCN +C +C + D + +G + +D++ + + ++ Sbjct: 19 RLVVFLQ--GCNF-----------RCLYCANPDTIDTKG-ESTETTIDEIVRMAVSQKAF 64 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 G+K G +GGEP LQ +PL Q L ++ I ++TNG+I Sbjct: 65 FGKKGG--VTFSGGEPTLQAKALIPLFQRLKEQSIHICIDTNGSI 107 >gi|212694897|ref|ZP_03303025.1| hypothetical protein BACDOR_04431 [Bacteroides dorei DSM 17855] gi|212662575|gb|EEB23149.1| hypothetical protein BACDOR_04431 [Bacteroides dorei DSM 17855] Length = 233 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 20/105 (19%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADL-IEEQWI 79 R+ VF + GCN +C +C + D + +G + +D++ + + ++ Sbjct: 10 RLVVFLQ--GCNF-----------RCLYCANPDTIDTKG-ESTETTIDEIVRMAVSQKAF 55 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 G+K G +GGEP LQ +PL Q L ++ I ++TNG+I Sbjct: 56 FGKKGG--VTFSGGEPTLQAKALIPLFQRLKEQSIHICIDTNGSI 98 >gi|254883806|ref|ZP_05256516.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 4_3_47FAA] gi|254836599|gb|EET16908.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 4_3_47FAA] Length = 240 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 20/105 (19%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADL-IEEQWI 79 R+ VF + GCN +C +C + D + +G + +D++ + + ++ Sbjct: 19 RLVVFLQ--GCNF-----------RCLYCANPDTIDTKG-ESTETAIDEIVHMAVSQKAF 64 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 G+K G +GGEP LQ +PL Q L ++ I ++TNG+I Sbjct: 65 FGKKGG--VTFSGGEPTLQAKALIPLFQRLKEQNIHICIDTNGSI 107 >gi|289551435|ref|YP_003472339.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus lugdunensis HKU09-01] gi|289180966|gb|ADC88211.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus lugdunensis HKU09-01] Length = 238 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 18/177 (10%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG GR +F R +GC+ +C +CD+ F G+ + Sbjct: 7 VLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSVFTW-DGSAKDQ 54 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 + ++ E+ G + ++GG P L + L+ A+ET G+ Sbjct: 55 IQLMSATEIYEKLIEIGGDCFDHVTISGGNPALIKGIQDLVDLFETEHIATALETQGSKF 114 Query: 124 PP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY--IGFDFERFSLQPM 176 P I+ + +SPK + L V Q N + FD E ++ M Sbjct: 115 QPWMTQINDLTISPKPPSSSMTPNLEVLDQVIAQCVPQSLNLKVVVFDDEDYAFAKM 171 >gi|265750428|ref|ZP_06086491.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 3_1_33FAA] gi|263237324|gb|EEZ22774.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 3_1_33FAA] Length = 242 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 20/105 (19%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADL-IEEQWI 79 R+ VF + GCN +C +C + D + +G + +D++ + + ++ Sbjct: 19 RLVVFLQ--GCNF-----------RCLYCANPDTIDTKG-ESTETTIDEIVRMAVSQKAF 64 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 G+K G +GGEP LQ +PL Q L ++ I ++TNG+I Sbjct: 65 FGKKGG--VTFSGGEPTLQAKALIPLFQRLKEQNIHICIDTNGSI 107 >gi|319901645|ref|YP_004161373.1| pyruvate formate-lyase activating enzyme [Bacteroides helcogenes P 36-108] gi|319416676|gb|ADV43787.1| pyruvate formate-lyase activating enzyme [Bacteroides helcogenes P 36-108] Length = 241 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 8/81 (9%) Query: 46 QCRFC-DTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--V 101 +C +C + D + I+G T + Q+A I ++ G+K G +GGEP LQ + + Sbjct: 30 RCLYCANPDTIEIKGGTPTSSEEILQMA--ISQKAFFGKKGG--ITFSGGEPTLQAEALI 85 Query: 102 PLIQALNKRGFEIAVETNGTI 122 PL++ L K G I +++NG I Sbjct: 86 PLLKDLKKNGIHICLDSNGGI 106 >gi|77920322|ref|YP_358137.1| pyruvate-formate lyase-activating enzyme [Pelobacter carbinolicus DSM 2380] gi|77546405|gb|ABA89967.1| pyruvate-formate lyase-activating enzyme [Pelobacter carbinolicus DSM 2380] Length = 231 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 20/105 (19%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ--W 78 GR+A F GCNL C FC + + Y ++ L + +E++ + Sbjct: 16 GRIASLVFFGGCNL-----------SCPFCHNPDLVQAPDRLPDYPLEPLFEELEQRRSF 64 Query: 79 ITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 I G V++GGEP L D +P ++ + + G + ++TNG + Sbjct: 65 IDG------VVISGGEPTLYPDLIPFMRRIKQLGLMVKLDTNGLL 103 >gi|70727187|ref|YP_254103.1| hypothetical protein SH2188 [Staphylococcus haemolyticus JCSC1435] gi|68447913|dbj|BAE05497.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 238 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 16/135 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG GR +F R +GC+ +C +CD+ F G+ Sbjct: 7 VLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAKED 54 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 + ++ + G + ++GG P L + L+ ++ A+ET G+ Sbjct: 55 IKLMTAEEIYNQLKKIGGDRFDHVTISGGNPALIKGIQDLVDLFEEKQIYTALETQGSKF 114 Query: 124 PP--QGIDWICVSPK 136 P + I+ + +SPK Sbjct: 115 QPWMRQINDLTISPK 129 >gi|118431072|ref|NP_147264.2| molybdenum cofactor biosynthesis protein MoaA [Aeropyrum pernix K1] gi|116062398|dbj|BAA79443.2| molybdenum cofactor biosynthesis protein MoaA [Aeropyrum pernix K1] Length = 367 Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 4/55 (7%) Query: 74 IEEQWITGEKEGRYCV----LTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 +E+ I GE R V LTGGEPL++ DV I A+ R E+++ TNG + P Sbjct: 62 VEDYDIIGEAASRLGVDSFKLTGGEPLIRGDVDKIVAVLARYGEVSMTTNGILLP 116 >gi|6685662|sp|Q9YEV3|MOAA_AERPE RecName: Full=Probable molybdenum cofactor biosynthesis protein A Length = 355 Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 4/55 (7%) Query: 74 IEEQWITGEKEGRYCV----LTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 +E+ I GE R V LTGGEPL++ DV I A+ R E+++ TNG + P Sbjct: 50 VEDYDIIGEAASRLGVDSFKLTGGEPLIRGDVDKIVAVLARYGEVSMTTNGILLP 104 >gi|302189159|ref|ZP_07265832.1| sucrose porin precursor [Pseudomonas syringae pv. syringae 642] Length = 497 Score = 37.0 bits (84), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +++++F L H F LW+G+ DR + + D+D V + GT GG Sbjct: 171 NVRQVFTELD----HIAAFKGNSVFENATLWAGKHFDRDNFDIHWLDSDVVFLAGTGGGI 226 Query: 65 YNVDQLADLIEEQWITGEKEGRYC 88 Y+V D + G G + Sbjct: 227 YDVQMTKDWRSNYSLIGRNYGDFS 250 >gi|302036912|ref|YP_003797234.1| molybdenum cofactor biosynthesis protein A [Candidatus Nitrospira defluvii] gi|300604976|emb|CBK41309.1| Molybdenum cofactor biosynthesis protein A [Candidatus Nitrospira defluvii] Length = 354 Score = 37.0 bits (84), Expect = 1.8, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 10/94 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 DR + +C++C + D+ + R + ++ E I E LTGGEPLL+ Sbjct: 30 DRCNLRCKYCMPEDDYAWLP-----RDTILTFEEMAELTAIFTELGVDKVRLTGGEPLLR 84 Query: 99 VDVP-LIQAL--NKRGFEIAVETNGTIEPPQGID 129 D+P ++ L N+R EIA+ +NG + Q D Sbjct: 85 RDLPRFVRQLSENRRITEIALTSNGVLMADQAAD 118 >gi|134046626|ref|YP_001098111.1| radical SAM domain-containing protein [Methanococcus maripaludis C5] gi|132664251|gb|ABO35897.1| Radical SAM domain protein [Methanococcus maripaludis C5] Length = 242 Score = 37.0 bits (84), Expect = 1.8, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 33/139 (23%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I+E+F ++ GEG G+ +F RF C L C +CD GG Sbjct: 2 IREVFSSIMGEGKFIGKRFIFVRFKECPL-----------DCIYCDE-----PNAPGGTA 45 Query: 66 NVDQLA---DLIEEQWITGE---------KEGRYCV-LTGGEPLLQVD--VPLIQALNKR 110 V++++ D +E + E + V TGGEPLL + + L + Sbjct: 46 RVEEVSGSGDFMEYLELEHELIDIIEKLRTPDLFAVSFTGGEPLLYSNKIKQYSEILKHK 105 Query: 111 GFEIAVETNGTIEPPQGID 129 G++ +E+NG P+ +D Sbjct: 106 GYKTFLESNGMF--PERLD 122 >gi|205373223|ref|ZP_03226027.1| radical SAM domain-containing protein [Bacillus coahuilensis m4-4] Length = 252 Score = 37.0 bits (84), Expect = 1.8, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 24/141 (17%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + EIF T+QGEG G+ +F R +GC+ C +CD+ F T Sbjct: 6 FPVLEIFGPTVQGEGMVIGQKTMFIRTAGCDY-----------SCSWCDSSF-----TWD 49 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYC----VLTGGEP-LLQVDVPLIQALNKRGFEIAVE 117 G D +E W + G C ++GG P LL+ L+ + G + A+E Sbjct: 50 GSAKEDIRLLSADEIWSELVQVGGECFNHVTISGGNPALLKHLNELLDVFHNHGIQSALE 109 Query: 118 TNGTI--EPPQGIDWICVSPK 136 T G+ + ID + +SPK Sbjct: 110 TQGSRWQDWFLDIDDLTLSPK 130 >gi|145554191|gb|ABP68894.1| unknown [Bacillus sp. PL-12] Length = 258 Score = 37.0 bits (84), Expect = 1.8, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 24/139 (17%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF T+QGEG G+ +F R +GC+ C +CD+ F K Sbjct: 22 VMEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCAWCDSSFTWDGSGKDLV 70 Query: 65 YNVDQLADLIEEQWITGEKEG----RYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 +D +E W + G Y ++GG P L ++ L++ L + I +ET Sbjct: 71 RQMDA-----DEVWRELKALGGDGFTYVTISGGNPALIKNLSGLVELLKENQISICLETQ 125 Query: 120 GTIEPPQ--GIDWICVSPK 136 G+ ID + +SPK Sbjct: 126 GSKWQDWFLEIDALTLSPK 144 >gi|294102548|ref|YP_003554406.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Aminobacterium colombiense DSM 12261] gi|293617528|gb|ADE57682.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Aminobacterium colombiense DSM 12261] Length = 229 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 15/77 (19%) Query: 88 CVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146 V+TGGEP LQ D +P I+ + GF + ++TNG+ P+G+ G DL Sbjct: 67 VVITGGEPTLQPDLLPFIEKVKNMGFLVKLDTNGS--DPKGLQSFI-----GKDL----- 114 Query: 147 QELKLVFPQVNVSPENY 163 + V V SPE Y Sbjct: 115 --VDYVAMDVKASPEEY 129 >gi|304315862|ref|YP_003851007.1| radical SAM protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777364|gb|ADL67923.1| Radical SAM domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 452 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 7/81 (8%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--- 102 C +C + + R VD D I E+ + GEK Y L GGEP + DV Sbjct: 104 SCIYCYERGIPTKKDLITREAVDAFFDDINER-LKGEKVKPYITLFGGEPFIDTDVQKEI 162 Query: 103 ---LIQALNKRGFEIAVETNG 120 +++ + G+EIA TNG Sbjct: 163 IDYIVEKSKEYGYEIAAVTNG 183 >gi|304404568|ref|ZP_07386229.1| pyruvate formate-lyase activating enzyme [Paenibacillus curdlanolyticus YK9] gi|304346375|gb|EFM12208.1| pyruvate formate-lyase activating enzyme [Paenibacillus curdlanolyticus YK9] Length = 245 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 4/102 (3%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--V 101 + QC+FC T G + VD++ + IE + G +TGGEP LQ Sbjct: 29 ALQCQFCHNPDTWDPAT-GRQVTVDEILNEIEPYLAYYKGSGGGITVTGGEPTLQAPFVA 87 Query: 102 PLIQALNKR-GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 L +A +R G A++++G +P ++ + + DLK Sbjct: 88 QLFKACKERFGLHTALDSSGFCDPSHAVELMTYTDLVLLDLK 129 >gi|300087565|ref|YP_003758087.1| radical SAM domain-containing protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527298|gb|ADJ25766.1| Radical SAM domain protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 381 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 6/77 (7%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 C C ++G G N ++ LI++ G+ +LTGGEPLL+ D+ I Sbjct: 30 CEHCRAS--ALKGPYPGELNSEECFRLIDQIHQIGQP---ILILTGGEPLLREDIFEIAG 84 Query: 107 L-NKRGFEIAVETNGTI 122 +K+GF + + TNGT+ Sbjct: 85 YASKKGFRVVMGTNGTL 101 >gi|189347395|ref|YP_001943924.1| Radical SAM domain protein [Chlorobium limicola DSM 245] gi|189341542|gb|ACD90945.1| Radical SAM domain protein [Chlorobium limicola DSM 245] Length = 364 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 18/111 (16%) Query: 19 HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEE 76 H F GCNL +CR C D + G +G + + +I E Sbjct: 10 HPLHTIYFYLTEGCNL-----------KCRHCWIDPKYQG-EGEQHPSLDPSLFRKIIRE 57 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 G R LTGGEPLL + L+ + + G +++VETNG + PQ Sbjct: 58 AIPLGLTSVR---LTGGEPLLHPAIGELLDCIGENGLQLSVETNGLLCSPQ 105 >gi|237710756|ref|ZP_04541237.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 9_1_42FAA] gi|229455478|gb|EEO61199.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 9_1_42FAA] Length = 168 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 20/105 (19%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADL-IEEQWI 79 R+ VF GCN +C +C + D + +G + +D++ + + ++ Sbjct: 19 RLVVF--LQGCNF-----------RCLYCANPDTIDTKG-ESTETTIDEIVRMAVSQKAF 64 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 G+K G +GGEP LQ +PL Q L ++ I ++TNG+I Sbjct: 65 FGKKGG--VTFSGGEPTLQAKALIPLFQRLKEQSIHICIDTNGSI 107 >gi|114567375|ref|YP_754529.1| molybdenum cofactor biosynthesis protein A [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122317679|sp|Q0AVU6|MOAA_SYNWW RecName: Full=Molybdenum cofactor biosynthesis protein A gi|114338310|gb|ABI69158.1| GTP cyclohydrolase subunit MoaA [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 326 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 6/85 (7%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +CR+C + G+ Y++ L ++ I E + LTGGEPL++ + Sbjct: 18 DRCNLRCRYCMPE-TGVDNLT--HYSILSLEEMARLVRIASELGIQKIRLTGGEPLVRRN 74 Query: 101 VP-LIQALNK--RGFEIAVETNGTI 122 VP LI + + R +IA+ TNGT+ Sbjct: 75 VPQLISYIAQIPRIDDIALTTNGTL 99 >gi|289648544|ref|ZP_06479887.1| sucrose porin precursor [Pseudomonas syringae pv. aesculi str. 2250] Length = 497 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +++++F L H F LW+G+ DR + + D+D V + GT GG Sbjct: 171 NVRQVFTELD----HIAAFKGNSVFENATLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 226 Query: 65 YNVDQLADLIEEQWITGEKEGRYC 88 Y+V D + G G + Sbjct: 227 YDVQMTKDWRSNYSLIGRNYGDFS 250 >gi|163858381|ref|YP_001632679.1| heme biosynthesis protein [Bordetella petrii DSM 12804] gi|163262109|emb|CAP44411.1| heme biosynthesis protein [Bordetella petrii] Length = 396 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 86 RYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144 R +L+GGEPLL+ D+ L +GF +A+ +NGT+ I+ I + + I Sbjct: 79 RVLILSGGEPLLRPDLFQLAGHARVKGFFVALSSNGTLIDAHNIEQIAAAQFDYVGISID 138 Query: 145 GGQELKLVFPQV 156 G QE+ + Q+ Sbjct: 139 GLQEVHDAWRQM 150 >gi|320321806|gb|EFW77904.1| sucrose porin precursor [Pseudomonas syringae pv. glycinea str. B076] gi|320331554|gb|EFW87494.1| sucrose porin precursor [Pseudomonas syringae pv. glycinea str. race 4] Length = 497 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +++++F L H F LW+G+ DR + + D+D V + GT GG Sbjct: 171 NVRQVFTELD----HIAAFKGNSVFENATLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 226 Query: 65 YNVDQLADLIEEQWITGEKEGRYC 88 Y+V D + G G + Sbjct: 227 YDVQMTKDWRSNYSLIGRNYGDFS 250 >gi|330954270|gb|EGH54530.1| sucrose porin [Pseudomonas syringae Cit 7] Length = 497 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +++++F L H F LW+G+ DR + + D+D V + GT GG Sbjct: 171 NVRQVFTELD----HIAAFKGNSVFENATLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 226 Query: 65 YNVDQLADLIEEQWITGEKEGRYC 88 Y+V D + G G + Sbjct: 227 YDVQMTKDWRSNYSLIGRNYGDFS 250 >gi|150005399|ref|YP_001300143.1| putative pyruvate formate-lyase 1 activating enzyme [Bacteroides vulgatus ATCC 8482] gi|294777180|ref|ZP_06742637.1| putative pyruvate formate-lyase 1-activating enzyme [Bacteroides vulgatus PC510] gi|149933823|gb|ABR40521.1| putative pyruvate formate-lyase 1 activating enzyme [Bacteroides vulgatus ATCC 8482] gi|294449049|gb|EFG17592.1| putative pyruvate formate-lyase 1-activating enzyme [Bacteroides vulgatus PC510] Length = 242 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 20/105 (19%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADL-IEEQWI 79 R+ VF + GCN +C +C + D + +G + +D++ + + ++ Sbjct: 19 RLVVFLQ--GCNF-----------RCLYCANPDTIDTKG-ESTETAIDEIVRMAVSQKAF 64 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 G+K G +GGEP LQ +PL Q L ++ I ++TNG+I Sbjct: 65 FGKKGG--VTFSGGEPTLQAKALIPLFQRLKEQNIHICIDTNGSI 107 >gi|325297399|ref|YP_004257316.1| pyruvate formate-lyase activating enzyme [Bacteroides salanitronis DSM 18170] gi|324316952|gb|ADY34843.1| pyruvate formate-lyase activating enzyme [Bacteroides salanitronis DSM 18170] Length = 242 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 18/124 (14%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 R+ VF + GCN +C +C + D + +G D L + ++ Sbjct: 19 RLVVFLQ--GCNF-----------RCLYCANPDTIDCKGEGKNTAPEDILRMAVSQKPFF 65 Query: 81 GEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAG 138 G+K G +GGEP +Q +PL + L + G I V+TNG++ D ++ Sbjct: 66 GKKGG--ITFSGGEPTIQAKALIPLFRMLKEAGIHICVDTNGSVWNESVKDLFTLADLVL 123 Query: 139 CDLK 142 D+K Sbjct: 124 LDVK 127 >gi|330890540|gb|EGH23201.1| sucrose porin [Pseudomonas syringae pv. mori str. 301020] Length = 493 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +++++F L H F LW+G+ DR + + D+D V + GT GG Sbjct: 167 NVRQVFTELD----HIAAFKGNSVFENATLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 222 Query: 65 YNVDQLADLIEEQWITGEKEGRYC 88 Y+V D + G G + Sbjct: 223 YDVQMTKDWRSNYSLIGRNYGDFS 246 >gi|145299902|ref|YP_001142743.1| sucrose porin [Aeromonas salmonicida subsp. salmonicida A449] gi|142852674|gb|ABO90995.1| sucrose porin [Aeromonas salmonicida subsp. salmonicida A449] Length = 496 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%) Query: 21 GRVAVF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72 G +A F F LW+G+ DR + + D+D V + GT GG Y+V QLAD Sbjct: 183 GNLASFDGAFKNAVLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGVYDV-QLAD 234 >gi|118576201|ref|YP_875944.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A] gi|118194722|gb|ABK77640.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A] Length = 554 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 33/182 (18%) Query: 4 YSIKEIFLTL--QGEGGHAGRVAV----------FC--RFSGCNLWSGREQDRLSAQCRF 49 Y + + F T G+G HA V V C S L + +R C + Sbjct: 65 YELYQKFSTYWQDGKGAHAPNVMVDKCACPNNCGLCTNHLSHSGLANMIVTNRCDLTCWY 124 Query: 50 CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE----GRYCVLTGGEPLLQVDVP-LI 104 C F ++ G Y + D + T E G +TGGEP+L+ D+ +I Sbjct: 125 C---FFYVKKGLEGAYMYEPSLDQVRAMMKTLRSERPIAGNSIQITGGEPMLRTDITDII 181 Query: 105 QALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN--VSPE 161 + + + G + I + TNG + P+A D+++ G L L F V +P+ Sbjct: 182 KIMKEEGVDHIQMNTNGIRH--------AMDPEAARDVRLAGCNNLYLSFDGVTARTNPK 233 Query: 162 NY 163 N+ Sbjct: 234 NH 235 >gi|330882022|gb|EGH16171.1| sucrose porin [Pseudomonas syringae pv. glycinea str. race 4] Length = 550 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +++++F L H F LW+G+ DR + + D+D V + GT GG Sbjct: 224 NVRQVFTELD----HIAAFKGNSVFENATLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 279 Query: 65 YNVDQLADLIEEQWITGEKEGRYC 88 Y+V D + G G + Sbjct: 280 YDVQMTKDWRSNYSLIGRNYGDFS 303 >gi|147920417|ref|YP_685808.1| hypothetical protein RCIX1164 [uncultured methanogenic archaeon RC-I] gi|110621204|emb|CAJ36482.1| hypothetical protein RCIX1164 [uncultured methanogenic archaeon RC-I] Length = 340 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 7/58 (12%) Query: 72 DLIEEQW--ITG----EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 DL +W ITG E R ++GGEPLL+ D+P ++ + RG +I + TNGT+ Sbjct: 42 DLPAPEWAKITGKLQRESSVRLITVSGGEPLLREDLPEILGDIKTRGIDINLITNGTL 99 >gi|331092875|ref|ZP_04586273.2| sucrose porin [Pseudomonas syringae pv. oryzae str. 1_6] gi|331125372|ref|ZP_04592725.2| sucrose porin [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020662|gb|EGI00719.1| sucrose porin [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027131|gb|EGI07186.1| sucrose porin [Pseudomonas syringae pv. oryzae str. 1_6] Length = 508 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +++++F L H F LW+G+ DR + + D+D V + GT GG Sbjct: 199 NVRQVFTELD----HIAAFKGNSMFENSTLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 254 Query: 65 YNVDQLADLIEEQWITGEKEGRYC 88 Y+V D + G G + Sbjct: 255 YDVQMTKDWRSNYSLIGRNYGDFS 278 >gi|330810031|ref|YP_004354493.1| heme d1 biosynthesis protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378139|gb|AEA69489.1| heme d1 biosynthesis protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 392 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 86 RYCVLTGGEPLLQVDVPLIQALNK-RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144 R +L+GGEPLL+ D+ + A + +GF +A+ TNGT+ I+ I + + I Sbjct: 77 RVLILSGGEPLLREDLFQLSAYARDKGFFLALSTNGTLIDASNIEQIAAANFDYVGISID 136 Query: 145 GGQELKLVFPQVNVS 159 G + F Q+ S Sbjct: 137 GLEATHDEFRQLKGS 151 >gi|39997584|ref|NP_953535.1| TatD family deoxyribonuclease [Geobacter sulfurreducens PCA] gi|39984476|gb|AAR35862.1| deoxyribonuclease, TatD family [Geobacter sulfurreducens PCA] Length = 462 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 56/142 (39%), Gaps = 28/142 (19%) Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT--DFVGIQGTKGGRYNVDQLAD 72 GE A R+A R N +R S +C FC D+ KG +D D Sbjct: 261 GESDQAARIAYRIR----NSLYLNITNRCSNRCSFCAKFDDYT----VKGHHLRLDHEPD 312 Query: 73 LIEEQWITGE----KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQ 126 E GE E +C GEP+L++D V + + L KRGF I + T+G Sbjct: 313 SAEVLAAVGEPGPVDEIVFCGF--GEPMLRLDLIVEVARELKKRGFRIRINTDGQANLVH 370 Query: 127 G----------IDWICVSPKAG 138 G +D I VS A Sbjct: 371 GRNVLPELQGLVDCISVSLNAA 392 >gi|307635039|gb|ADI85246.2| magnesium-dependent deoxyribonuclease, TatD family, and radical SAM domain iron-sulfur oxidoreductase [Geobacter sulfurreducens KN400] Length = 462 Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 56/142 (39%), Gaps = 28/142 (19%) Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT--DFVGIQGTKGGRYNVDQLAD 72 GE A R+A R N +R S +C FC D+ KG +D D Sbjct: 261 GESDQAARIAYRIR----NSLYLNITNRCSNRCSFCAKFDDYT----VKGHHLRLDHEPD 312 Query: 73 LIEEQWITGE----KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQ 126 E GE E +C GEP+L++D V + + L KRGF I + T+G Sbjct: 313 SAEVLAAVGEPGPVDEIVFCGF--GEPMLRLDLIVEVARELKKRGFRIRINTDGQANLVH 370 Query: 127 G----------IDWICVSPKAG 138 G +D I VS A Sbjct: 371 GRNVLPELQGLVDCISVSLNAA 392 >gi|71738079|ref|YP_277264.1| sucrose porin [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558632|gb|AAZ37843.1| sucrose porin precursor [Pseudomonas syringae pv. phaseolicola 1448A] Length = 525 Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +++++F L H F LW+G+ DR + + D+D V + GT GG Sbjct: 199 NVRQVFTELD----HIAAFKGNSVFENATLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 254 Query: 65 YNVDQLADLIEEQWITGEKEGRYC 88 Y+V D + G G + Sbjct: 255 YDVQMTKDWRSNYSLIGRNYGDFS 278 >gi|330977465|gb|EGH77411.1| sucrose porin [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 497 Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +++++F L H F LW+G+ DR + + D+D V + GT GG Sbjct: 171 NVRQVFTELD----HIAAFKGNSVFENSTLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 226 Query: 65 YNVDQLADLIEEQWITGEKEGRYC 88 Y+V D + G G + Sbjct: 227 YDVQMTKDWRSNYSLIGRNYGDFS 250 >gi|330943013|gb|EGH45458.1| sucrose porin [Pseudomonas syringae pv. pisi str. 1704B] Length = 497 Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +++++F L H F LW+G+ DR + + D+D V + GT GG Sbjct: 171 NVRQVFTELD----HIAAFKGNSVFENSTLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 226 Query: 65 YNVDQLADLIEEQWITGEKEGRYC 88 Y+V D + G G + Sbjct: 227 YDVQMTKDWRSNYSLIGRNYGDFS 250 >gi|118576205|ref|YP_875948.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A] gi|118194726|gb|ABK77644.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A] Length = 589 Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 33/182 (18%) Query: 4 YSIKEIFLTL--QGEGGHAGRVAV----------FC--RFSGCNLWSGREQDRLSAQCRF 49 Y + + F T G+G HA V V C S L + +R C + Sbjct: 100 YELYQKFSTYWQDGKGAHAPNVMVDKCACPNNCGLCTNHLSHSGLANMIVTNRCDLTCWY 159 Query: 50 CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE----GRYCVLTGGEPLLQVDVP-LI 104 C F ++ G Y + D + T E G +TGGEP+L+ D+ +I Sbjct: 160 C---FFYVKKGLEGAYMYEPSLDQVRAMMKTLRSERPIAGNSIQITGGEPMLRTDITDII 216 Query: 105 QALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN--VSPE 161 + + + G + I + TNG + P+A D+++ G L L F V +P+ Sbjct: 217 KIMKEEGVDHIQMNTNGIRH--------AMDPEAARDVRLAGCNNLYLSFDGVTARTNPK 268 Query: 162 NY 163 N+ Sbjct: 269 NH 270 >gi|78778108|ref|YP_394423.1| hypothetical protein Suden_1914 [Sulfurimonas denitrificans DSM 1251] gi|78498648|gb|ABB45188.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM 1251] Length = 221 Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 4/38 (10%) Query: 89 VLTGGEPLLQVDVPL----IQALNKRGFEIAVETNGTI 122 VLTGGEPL+ + P+ ++ L +RG +I ETNGT+ Sbjct: 61 VLTGGEPLIYANEPIFIEFLEKLYERGHKITFETNGTL 98 >gi|288803627|ref|ZP_06409057.1| cobalamin synthesis protein [Prevotella melaninogenica D18] gi|288333867|gb|EFC72312.1| cobalamin synthesis protein [Prevotella melaninogenica D18] Length = 418 Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 10/123 (8%) Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN----KRGFE-IAVE 117 G N+D ADLIE + +K+ L G + + L+Q LN ++ F+ I +E Sbjct: 43 GEVNID--ADLIEAGGVVDQKDDSLVALQNGCICCTLKMDLVQQLNEIVSQQKFDYIVIE 100 Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN---VSPENYIGFDFERFSLQ 174 +G EP IC P+ DL KG L + V+ + E G D + LQ Sbjct: 101 ASGICEPAPIAQTICAYPQMYPDLAKKGKAVLDSIVTVVDARRMCDEFSAGNDLLKKDLQ 160 Query: 175 PMD 177 D Sbjct: 161 EDD 163 >gi|302345609|ref|YP_003813962.1| CobW/P47K family protein [Prevotella melaninogenica ATCC 25845] gi|302149306|gb|ADK95568.1| CobW/P47K family protein [Prevotella melaninogenica ATCC 25845] Length = 421 Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 10/123 (8%) Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN----KRGFE-IAVE 117 G N+D ADLIE + +K+ L G + + L+Q LN ++ F+ I +E Sbjct: 43 GEVNID--ADLIEAGGVVDQKDDSLVALQNGCICCTLKMDLVQQLNEIVSQQKFDYIVIE 100 Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN---VSPENYIGFDFERFSLQ 174 +G EP IC P+ DL KG L + V+ + E G D + LQ Sbjct: 101 ASGICEPAPIAQTICAYPQMYPDLAKKGKAVLDSIVTVVDARRMCDEFSAGNDLLKKDLQ 160 Query: 175 PMD 177 D Sbjct: 161 EDD 163 >gi|330809190|ref|YP_004353652.1| sucrose porin [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377298|gb|AEA68648.1| sucrose porin [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 518 Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +++++F L H F LW+G+ DR + + D+D V + GT GG Sbjct: 192 NVRQVFTELD----HLAAFKGNSMFENSTLWAGKRFDRDNFDIHWLDSDVVYLAGTGGGI 247 Query: 65 YNVDQLADLIEEQWITGEKEGRYC 88 Y++ D + G G + Sbjct: 248 YDIQMTKDWRSNYSLIGRNYGDFS 271 >gi|304314308|ref|YP_003849455.1| MoaA related protein [Methanothermobacter marburgensis str. Marburg] gi|302587767|gb|ADL58142.1| MoaA related protein [Methanothermobacter marburgensis str. Marburg] Length = 227 Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 7/76 (9%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 +CR+C F + + Y+ +++AD + I+ E+ ++ GGEP LQ D+P Sbjct: 25 RCRYC---FFTPRNCR--EYDAERIADRV--LRISSEEGIDSVLIAGGEPTLQRDLPEFT 77 Query: 106 ALNKRGFEIAVETNGT 121 R + + TNGT Sbjct: 78 EALSRDLHVTISTNGT 93 >gi|90414839|ref|ZP_01222806.1| putative sucrose porin [Photobacterium profundum 3TCK] gi|90324082|gb|EAS40669.1| putative sucrose porin [Photobacterium profundum 3TCK] Length = 457 Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72 S W+G+ DR + F D+D V + GT G Y+V QL+D Sbjct: 163 LSNATFWAGKRFDRANYDIHFLDSDIVFLSGTGAGVYDV-QLSD 205 >gi|326532348|dbj|BAK05103.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 722 Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 18/168 (10%) Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG---FE 113 + G G ++ L +W+ G++ + +L L V LI+ N Sbjct: 431 MSGCSGVEFSYHSENSLPLPEWVVGDETRAFHLL-----LHVVATLLIRRRNGAAPGRLT 485 Query: 114 IAVET-NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 +VE+ N E Q DWI + P AGC +++K ++ P+ + SP+ + F + Sbjct: 486 FSVESCNVDEEERQSRDWIPMRPSAGCSVRVKFQAGMETKSPRRSASPDMGLSFGMCKKI 545 Query: 173 LQPMDGPFLEENTN------LAISYCFQNP---KWRLSVQTHKFIGIR 211 +Q M+G ++ + + + Q P +W + + G+R Sbjct: 546 VQVMNGSMRSSGSDGGSTVTVVLQFQVQQPGARRWTSTPPVPRLDGLR 593 >gi|154495914|ref|ZP_02034610.1| hypothetical protein BACCAP_00194 [Bacteroides capillosus ATCC 29799] gi|150274797|gb|EDN01853.1| hypothetical protein BACCAP_00194 [Bacteroides capillosus ATCC 29799] Length = 376 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 12/113 (10%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR-----YCVLTGGEPL 96 R + C+ C Q GR +L +QW+ ++ + + +LTGGEPL Sbjct: 40 RCNFNCKMCYVHQTAEQIAASGR------KELTADQWLDIARQAKDAGMVFLLLTGGEPL 93 Query: 97 LQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 + P L+ L + G ++V +NG++ + ++ + P ++ + GG + Sbjct: 94 TFPEFPRLLHELKQLGLLVSVNSNGSLIRGEMLEALKKDPPLRFNITLYGGSD 146 >gi|289675040|ref|ZP_06495930.1| sucrose porin precursor [Pseudomonas syringae pv. syringae FF5] Length = 395 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +++++F L H F LW+G+ DR + + D+D V + GT GG Sbjct: 69 NVRQVFTELD----HIAAFKGNSVFENSTLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 124 Query: 65 YNVDQLADLIEEQWITGEKEGRYC 88 Y+V D + G G + Sbjct: 125 YDVQMTKDWRSNYSLIGRNYGDFS 148 >gi|291277034|ref|YP_003516806.1| hypothetical protein HMU08200 [Helicobacter mustelae 12198] gi|290964228|emb|CBG40077.1| putative hypothetical protein [Helicobacter mustelae 12198] Length = 286 Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL 34 M++ I EIF +LQGEG G +VF R CNL Sbjct: 1 MQILKISEIFYSLQGEGSAIGMPSVFVRVGLCNL 34 >gi|309389587|gb|ADO77467.1| Radical SAM domain protein [Halanaerobium praevalens DSM 2228] Length = 391 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 18/94 (19%) Query: 35 WSGREQDRLSAQCRFCDTDFVGIQ-----GTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 W+ Q L+ C+ C ++ I+ TK +DQLAD + + Sbjct: 41 WNINSQCNLN--CKHCYSNSNQIKKKTTLNTKEALKLIDQLADF----------KVPVLL 88 Query: 90 LTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 L+GGEPLL+ D V LI+ R + + TNGT+ Sbjct: 89 LSGGEPLLRKDLVKLIEKAKSRNLRVVISTNGTL 122 >gi|302390514|ref|YP_003826335.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermosediminibacter oceani DSM 16646] gi|302201142|gb|ADL08712.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermosediminibacter oceani DSM 16646] Length = 240 Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 21/106 (19%) Query: 19 HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE--E 76 + G VA GCN +C +C + + G+ G+ D +E + Sbjct: 24 YPGVVACTVFLPGCNF-----------RCPYCHNGPL-VTGSPKGKVPESVFFDYLERRK 71 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 + I G +TGGEP L D+P I L KRG ++ ++TNG+ Sbjct: 72 KLIDG------VCITGGEPTLWSDLPEFILKLKKRGLKVKLDTNGS 111 >gi|73668539|ref|YP_304554.1| tRNA-modifying enzyme [Methanosarcina barkeri str. Fusaro] gi|72395701|gb|AAZ69974.1| Fe-S oxidoreductase [Methanosarcina barkeri str. Fusaro] Length = 345 Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + I+E+W+ G + + GEP +P LI+ KRGF + TNGT+ Sbjct: 142 NAIKERWLEGNEPNNVAISLSGEPTFYPYLPELIEEYKKRGFTTFLVTNGTV 193 >gi|327398449|ref|YP_004339318.1| Radical SAM domain-containing protein [Hippea maritima DSM 10411] gi|327181078|gb|AEA33259.1| Radical SAM domain protein [Hippea maritima DSM 10411] Length = 351 Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%) Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 R + + + ++IEE E+ VLTGGEPLL+ DV + ++ +G + + TNGT+ Sbjct: 34 RLSFEDITNIIEE---ISEQFKPVVVLTGGEPLLREDVFDIADFIHSKGMRVGLATNGTL 90 >gi|268325532|emb|CBH39120.1| conserved hypothetical protein radical SAM superfamily [uncultured archaeon] Length = 342 Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 11/66 (16%) Query: 87 YCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 Y LTGGEPLL+ D ++ LN+ F+I++ +NG I ++ K C K G Sbjct: 56 YVELTGGEPLLRKDFDKILDLLNRLDFQISICSNG----------ILITEKMCCQFKEYG 105 Query: 146 GQELKL 151 ++L+L Sbjct: 106 VEKLQL 111 >gi|330971878|gb|EGH71944.1| porin, LamB type [Pseudomonas syringae pv. aceris str. M302273PT] Length = 497 Score = 36.2 bits (82), Expect = 3.0, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +++++F L H F LW+G+ DR + + D+D V + GT GG Sbjct: 171 NVRQVFTELD----HIAAFKGNSVFENSTLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 226 Query: 65 YNVDQLADLIEEQWITGEKEGRYC 88 Y+V D + G G + Sbjct: 227 YDVQMTRDWRSNYSLIGRNYGDFS 250 >gi|302342465|ref|YP_003806994.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075] gi|301639078|gb|ADK84400.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075] Length = 414 Score = 36.2 bits (82), Expect = 3.1, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 6/83 (7%) Query: 44 SAQCRFCDTDFVGIQGTKGGRY----NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 +A+C +C T + QG GRY +V ++ D + EQ I + + + GEPL+ Sbjct: 14 NARCTWCVTGYRNRQGVAYGRYMTPQDVAKVIDYLREQRII-TPDAYFFLYNWGEPLINP 72 Query: 100 D-VPLIQALNKRGFEIAVETNGT 121 +++ LN+R + TN + Sbjct: 73 HFAEIVEELNRREVTYIISTNAS 95 >gi|27467403|ref|NP_764040.1| coenzyme PQQ synthesis-like protein [Staphylococcus epidermidis ATCC 12228] gi|251810140|ref|ZP_04824613.1| queuosine biosynthesis protein [Staphylococcus epidermidis BCM-HMP0060] gi|282875714|ref|ZP_06284585.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus epidermidis SK135] gi|293368166|ref|ZP_06614796.1| ExsD protein [Staphylococcus epidermidis M23864:W2(grey)] gi|27314946|gb|AAO04082.1|AE016745_181 coenzyme PQQ synthesis-like protein [Staphylococcus epidermidis ATCC 12228] gi|251806332|gb|EES58989.1| queuosine biosynthesis protein [Staphylococcus epidermidis BCM-HMP0060] gi|281295741|gb|EFA88264.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus epidermidis SK135] gi|291317700|gb|EFE58116.1| ExsD protein [Staphylococcus epidermidis M23864:W2(grey)] gi|329723242|gb|EGG59772.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus epidermidis VCU144] gi|329735618|gb|EGG71902.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus epidermidis VCU045] gi|329736802|gb|EGG73067.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus epidermidis VCU028] Length = 237 Score = 36.2 bits (82), Expect = 3.1, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 20/142 (14%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV--GI 57 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTWDGS 49 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAV 116 +++ D + E G + ++GG P L + L+ + A+ Sbjct: 50 AKEDIKLMTAEEIYDALLE---IGGHRFNHVTISGGNPALIKGIQELVDLFEDKHIYTAL 106 Query: 117 ETNGTIEPP--QGIDWICVSPK 136 ET G+ ID + +SPK Sbjct: 107 ETQGSRFQSWMTQIDDLTISPK 128 >gi|303326377|ref|ZP_07356820.1| nitrite reductase heme biosynthesis J protein [Desulfovibrio sp. 3_1_syn3] gi|302864293|gb|EFL87224.1| nitrite reductase heme biosynthesis J protein [Desulfovibrio sp. 3_1_syn3] Length = 393 Score = 36.2 bits (82), Expect = 3.1, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 6/86 (6%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100 R + +C C V + GT N +Q +I++ G + +GGEPL++ D Sbjct: 49 RCNLKCVHCYAHAVEVDGTDD--INTEQAKAMIDDLAAFG---APVMLFSGGEPLVRKDL 103 Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQ 126 V L +G V TNGT+ PQ Sbjct: 104 VELASHATGKGMRAVVSTNGTLITPQ 129 >gi|288936715|ref|YP_003440774.1| porin LamB type [Klebsiella variicola At-22] gi|288891424|gb|ADC59742.1| porin LamB type [Klebsiella variicola At-22] Length = 505 Score = 36.2 bits (82), Expect = 3.1, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 23/39 (58%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 F G LW+G+ DR + + D+D V + GT GG Y+V Sbjct: 199 FKGATLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDV 237 >gi|330830461|ref|YP_004393413.1| Sucrose porin [Aeromonas veronii B565] gi|328805597|gb|AEB50796.1| Sucrose porin [Aeromonas veronii B565] Length = 500 Score = 36.2 bits (82), Expect = 3.2, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72 F LW+G+ DR + + D+D V + GT GG Y+V QLAD Sbjct: 196 FKNAVLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGVYDV-QLAD 238 >gi|117618402|ref|YP_857485.1| sucrose porin [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559809|gb|ABK36757.1| sucrose porin [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 496 Score = 36.2 bits (82), Expect = 3.2, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72 F LW+G+ DR + + D+D V + GT GG Y+V QLAD Sbjct: 192 FKNAVLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGVYDV-QLAD 234 >gi|330836098|ref|YP_004410739.1| glycyl-radical enzyme activating protein family [Spirochaeta coccoides DSM 17374] gi|329748001|gb|AEC01357.1| glycyl-radical enzyme activating protein family [Spirochaeta coccoides DSM 17374] Length = 252 Score = 36.2 bits (82), Expect = 3.2, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 18/126 (14%) Query: 6 IKEIFLTLQGEGGHAG---RVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59 ++ + L +Q H G R +F F GCNL W + +S + R ++ Sbjct: 1 MEAVLLNIQHFCLHDGPGIRSTIF--FKGCNLRCHWCANPES-ISMKVR------PELEE 51 Query: 60 TKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAV 116 + GGR + ++++ + + + ++ G L+GGEPLLQ D L AL+ G +A+ Sbjct: 52 SLGGRIWKLEEVLHDVLKDKVFYDESGGGVTLSGGEPLLQADFACALCDALHAHGVAVAI 111 Query: 117 ETNGTI 122 ET + Sbjct: 112 ETAACV 117 >gi|322667095|gb|EFY63267.1| hypothetical protein SEEM507_17615 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] Length = 81 Score = 36.2 bits (82), Expect = 3.2, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 11/49 (22%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT 52 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDT 40 >gi|228900023|ref|ZP_04064259.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis IBL 4222] gi|228964405|ref|ZP_04125519.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar sotto str. T04001] gi|228795262|gb|EEM42754.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar sotto str. T04001] gi|228859637|gb|EEN04061.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis IBL 4222] Length = 220 Score = 36.2 bits (82), Expect = 3.2, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 15/120 (12%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ +E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKNQIRQMTAEDIWDELVA 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G ++ + ++GG P L ++ L+ L + G A+ET G+ + ID + +SPK Sbjct: 51 IGGEKFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110 >gi|206895496|ref|YP_002246380.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Coprothermobacter proteolyticus DSM 5265] gi|206738113|gb|ACI17191.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Coprothermobacter proteolyticus DSM 5265] Length = 230 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 1/35 (2%) Query: 88 CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 V+TGGEP LQ D+ P ++ + K GF I ++TNG+ Sbjct: 68 VVVTGGEPTLQEDLQPFLEKIRKMGFLIKLDTNGS 102 >gi|319652978|ref|ZP_08007083.1| radical SAM domain-containing protein [Bacillus sp. 2_A_57_CT2] gi|317395327|gb|EFV76060.1| radical SAM domain-containing protein [Bacillus sp. 2_A_57_CT2] Length = 243 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 18/125 (14%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F Sbjct: 1 MSKIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSSFTWDGS 49 Query: 60 TKGG--RYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAV 116 K + D++ ++E G + ++GG P LL+ LI L +I + Sbjct: 50 AKDSIRQMEPDEIWKELKE---LGGDGFSFVTISGGNPALLKNLSELISLLKAEKIKICL 106 Query: 117 ETNGT 121 ET G+ Sbjct: 107 ETQGS 111 >gi|257485634|ref|ZP_05639675.1| sucrose porin precursor [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011924|gb|EGH91980.1| sucrose porin [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 493 Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +++++F L H F LW+G+ DR + + D+D V + GT GG Sbjct: 167 NVRQVFTELD----HIAAFKGNSVFENATLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 222 Query: 65 YNVDQLADLIEEQWITGEKEGRYC 88 Y+V D + G G + Sbjct: 223 YDVQMNKDWRSNYSLIGRNYGDFS 246 >gi|66044018|ref|YP_233859.1| porin, LamB type [Pseudomonas syringae pv. syringae B728a] gi|63254725|gb|AAY35821.1| Porin, LamB type [Pseudomonas syringae pv. syringae B728a] Length = 525 Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +++++F L H F LW+G+ DR + + D+D V + GT GG Sbjct: 199 NVRQVFTELD----HIAAFKGNSVFENSTLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 254 Query: 65 YNVDQLADLIEEQWITGEKEGRYC 88 Y+V D + G G + Sbjct: 255 YDVQMTRDWRSNYSLIGRNYGDFS 278 >gi|189461245|ref|ZP_03010030.1| hypothetical protein BACCOP_01895 [Bacteroides coprocola DSM 17136] gi|189432062|gb|EDV01047.1| hypothetical protein BACCOP_01895 [Bacteroides coprocola DSM 17136] Length = 242 Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 18/104 (17%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 R+ VF + GCN +C +C + D + +G D L + ++ Sbjct: 19 RLVVFLQ--GCNF-----------RCLYCANPDTIDAKGESKETSPEDILKMAVSQKPFF 65 Query: 81 GEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 G+K G +GGEP Q +PL + L + G I V+TNG I Sbjct: 66 GKKGG--ITFSGGEPTFQAKALIPLFRMLKEEGIHICVDTNGGI 107 >gi|224023837|ref|ZP_03642203.1| hypothetical protein BACCOPRO_00554 [Bacteroides coprophilus DSM 18228] gi|224017059|gb|EEF75071.1| hypothetical protein BACCOPRO_00554 [Bacteroides coprophilus DSM 18228] Length = 242 Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 18/104 (17%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 R+ VF + GCN +C +C + D + +G + L + ++ Sbjct: 19 RLVVFLQ--GCNF-----------RCLYCANPDTIDAKGESKETSPEEILKMAVSQKPFF 65 Query: 81 GEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 G+K G +GGEP Q +PL ++L + G I V+TNG+I Sbjct: 66 GKKGG--ITFSGGEPTFQARELIPLFRSLKEAGIHICVDTNGSI 107 >gi|330986986|gb|EGH85089.1| sucrose porin [Pseudomonas syringae pv. lachrymans str. M301315] Length = 497 Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +++++F L H F LW+G+ DR + + D+D V + GT GG Sbjct: 171 NVRQVFTELD----HIAAFKGNSVFENATLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 226 Query: 65 YNVDQLADLIEEQWITGEKEGRYC 88 Y+V D + G G + Sbjct: 227 YDVQMNKDWRSNYSLIGRNYGDFS 250 >gi|300919760|ref|ZP_07136240.1| LamB porin [Escherichia coli MS 115-1] gi|300413191|gb|EFJ96501.1| LamB porin [Escherichia coli MS 115-1] Length = 505 Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 23/39 (58%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 F G LW+G+ DR + + D+D V + GT GG Y+V Sbjct: 199 FKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDV 237 >gi|50593430|gb|AAT79461.1| putative 1-acyl-sn-glycerol-3-phosphate acyltransferase [Agrobacterium luteum] Length = 284 Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 4/62 (6%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW-ITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 CR DT FV G ++QL D +EE W IT EG T G LL PL++ Sbjct: 138 CRLNDTVFVSRSNRMGIAQQINQLRDALEETWAITIFPEG---TTTDGSMLLPFKAPLLK 194 Query: 106 AL 107 L Sbjct: 195 VL 196 >gi|290510229|ref|ZP_06549599.1| sucrose porin [Klebsiella sp. 1_1_55] gi|289776945|gb|EFD84943.1| sucrose porin [Klebsiella sp. 1_1_55] Length = 505 Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 23/39 (58%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 F G LW+G+ DR + + D+D V + GT GG Y+V Sbjct: 199 FKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDV 237 >gi|206579016|ref|YP_002239876.1| sucrose porin ScrY [Klebsiella pneumoniae 342] gi|206568074|gb|ACI09850.1| sucrose porin ScrY [Klebsiella pneumoniae 342] Length = 505 Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 23/39 (58%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 F G LW+G+ DR + + D+D V + GT GG Y+V Sbjct: 199 FKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDV 237 >gi|239828671|ref|YP_002951295.1| pyruvate formate-lyase activating enzyme [Geobacillus sp. WCH70] gi|239808964|gb|ACS26029.1| pyruvate formate-lyase activating enzyme [Geobacillus sp. WCH70] Length = 249 Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 9/80 (11%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-- 100 +C++C DT +G KG V+++ D ++ G ++GGEPLLQ+D Sbjct: 31 RCQYCHNADTWEIG----KGKEMTVEEIIDDVKTYLPFINASGGGITVSGGEPLLQIDFL 86 Query: 101 VPLIQALNKRGFEIAVETNG 120 + L +A K G A++++G Sbjct: 87 IELFKACKKLGIHTAIDSSG 106 >gi|330012904|ref|ZP_08307521.1| sucrose porin [Klebsiella sp. MS 92-3] gi|328533659|gb|EGF60363.1| sucrose porin [Klebsiella sp. MS 92-3] Length = 397 Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 23/39 (58%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 F G LW+G+ DR + + D+D V + GT GG Y+V Sbjct: 91 FKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDV 129 >gi|152969086|ref|YP_001334195.1| sucrose porin [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|134330|sp|P27218|SCRY_KLEPN RecName: Full=Sucrose porin; Flags: Precursor gi|43932|emb|CAA40657.1| sucrose porin [Klebsiella pneumoniae] gi|150953935|gb|ABR75965.1| sucrose porin [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 505 Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 23/39 (58%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 F G LW+G+ DR + + D+D V + GT GG Y+V Sbjct: 199 FKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDV 237 >gi|262041428|ref|ZP_06014631.1| sucrose porin [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041222|gb|EEW42290.1| sucrose porin [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 510 Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 23/39 (58%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 F G LW+G+ DR + + D+D V + GT GG Y+V Sbjct: 204 FKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDV 242 >gi|238893529|ref|YP_002918263.1| sucrose porin [Klebsiella pneumoniae NTUH-K2044] gi|238545845|dbj|BAH62196.1| sucrose porin [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 510 Score = 35.8 bits (81), Expect = 3.9, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 23/39 (58%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 F G LW+G+ DR + + D+D V + GT GG Y+V Sbjct: 204 FKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDV 242 >gi|304313308|ref|YP_003812906.1| Heme D1 biosynthesis protein [gamma proteobacterium HdN1] gi|301799041|emb|CBL47284.1| Heme D1 biosynthesis protein [gamma proteobacterium HdN1] Length = 390 Score = 35.8 bits (81), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134 +L+GGEPL++ D+ + + K GF + + +NGT+ Q ID I + Sbjct: 77 ILSGGEPLMRPDIFEIAERAKKMGFYVGLSSNGTLITEQNIDQIVAA 123 >gi|325062819|gb|ADY66509.1| radical activating protein [Agrobacterium sp. H13-3] Length = 251 Score = 35.8 bits (81), Expect = 4.1, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 54/134 (40%), Gaps = 15/134 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF T+QGEG G VF R GC+ +C +CDT + Sbjct: 17 ISEIFGPTIQGEGLLIGLPTVFVRTGGCDY-----------RCSWCDT-LHAVDSEYRDT 64 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + + + +E L+GG P +Q LI G+ A+ET G+I Sbjct: 65 WKPMSVEAIWQEVRRLSGGVPLTVSLSGGNPAIQPLGQLIAKGQGEGYRFALETQGSIAK 124 Query: 125 PQ--GIDWICVSPK 136 +D + +SPK Sbjct: 125 DWFGDLDHLVLSPK 138 >gi|282165058|ref|YP_003357443.1| hypothetical protein MCP_2388 [Methanocella paludicola SANAE] gi|282157372|dbj|BAI62460.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 398 Score = 35.8 bits (81), Expect = 4.1, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 11/66 (16%) Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPP 125 +D+LAD+ + Y ++TGGEP L+ D+ L++ ++ + + V+TNGT+ Sbjct: 97 IDRLADM----------KVFYLIITGGEPFLRPDILELLRHISTKNMMVKVDTNGTLIDD 146 Query: 126 QGIDWI 131 +D + Sbjct: 147 DAVDEL 152 >gi|78223860|ref|YP_385607.1| radical SAM family protein [Geobacter metallireducens GS-15] gi|78195115|gb|ABB32882.1| Radical SAM [Geobacter metallireducens GS-15] Length = 383 Score = 35.8 bits (81), Expect = 4.2, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Query: 89 VLTGGEPLLQVDVPLIQAL-NKRGFEIAVETNGTIEPPQ 126 L GGEPLL+ D I L K G E++V TNGTI P+ Sbjct: 58 ALMGGEPLLRKDFWQIAGLIRKLGMELSVITNGTIHDPE 96 >gi|297162459|gb|ADI12171.1| radical SAM domain-containing protein [Streptomyces bingchenggensis BCW-1] Length = 472 Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 18/93 (19%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL +C +C + + G + ++ DL+++ + + R + Sbjct: 104 GCNL-----------RCPYC---YASSEKCLPGELSTEESLDLVDQ---AADMDVRQMIF 146 Query: 91 TGGEPLLQVDVPLIQALNK-RGFEIAVETNGTI 122 TGGEP+L+ D+ L+ + + RG + + TNGT+ Sbjct: 147 TGGEPMLRKDLFLVASHARDRGLTVNMITNGTM 179 >gi|307546263|ref|YP_003898742.1| maltoporin [Halomonas elongata DSM 2581] gi|307218287|emb|CBV43557.1| K02024 maltoporin [Halomonas elongata DSM 2581] Length = 511 Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72 F ++W+G+ DR + + D+DF+ + GT GG Y++ Q AD Sbjct: 204 FENASIWAGKRFDRDNFDIHWLDSDFIFLAGTGGGIYDM-QFAD 246 >gi|44829548|gb|AAS47896.1| sucrose-specific outer membrane porin [Escherichia coli] Length = 505 Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 23/39 (58%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 F G LW+G+ DR + + D+D V + GT GG Y+V Sbjct: 199 FKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDV 237 >gi|268326277|emb|CBH39865.1| conserved hypothetical protein, radical SAM superfamily [uncultured archaeon] Length = 395 Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 11/61 (18%) Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 GR +DQ+A L + R V TGGEPLL+ D+ LI GF + + TNGT Sbjct: 109 GRALIDQIAAL----------DIRSFVFTGGEPLLREDLFDLIAYAKSIGFSVFIATNGT 158 Query: 122 I 122 + Sbjct: 159 L 159 >gi|282880593|ref|ZP_06289299.1| CobW/P47K family protein [Prevotella timonensis CRIS 5C-B1] gi|281305488|gb|EFA97542.1| CobW/P47K family protein [Prevotella timonensis CRIS 5C-B1] Length = 401 Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 13/138 (9%) Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK----RGFE-IAVE 117 G N+D ADLIE+ + G+K+ L G + V LI+ LN F+ I +E Sbjct: 43 GEVNID--ADLIEQGGVVGQKDDSLVALQNGCICCTLKVDLIEQLNDIVRMNKFDYIVIE 100 Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN---VSPENYIGFDFERFSLQ 174 +G EP IC P+ L G +L + V+ + E +G D + Q Sbjct: 101 ASGICEPAPIAQTICAYPELYPHLAKNGIAKLDAIVTVVDALRLRDEFNVGDDLLK---Q 157 Query: 175 PMDGPFLEENTNLAISYC 192 +D LE I +C Sbjct: 158 NIDDDDLERLVIEQIEFC 175 >gi|268325167|emb|CBH38755.1| conserved hypothetical protein, radical SAM superfamily [uncultured archaeon] Length = 395 Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 11/61 (18%) Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 GR +DQ+A L + R V TGGEPLL+ D+ LI GF + + TNGT Sbjct: 109 GRALIDQIAAL----------DIRSFVFTGGEPLLREDLFDLIAYAKSIGFSVFIATNGT 158 Query: 122 I 122 + Sbjct: 159 L 159 >gi|163783468|ref|ZP_02178459.1| Radical SAM [Hydrogenivirga sp. 128-5-R1-1] gi|159881232|gb|EDP74745.1| Radical SAM [Hydrogenivirga sp. 128-5-R1-1] Length = 362 Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 7/83 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 +R + C+ C + Q TKG ++D++ + ++ + EK R+ +L+GGEPLL+ D Sbjct: 31 NRCNLYCKHCYSS--ANQETKG-ELSLDEIRKVADD--LVNEK-VRFAILSGGEPLLRED 84 Query: 101 VPLIQA-LNKRGFEIAVETNGTI 122 + + A L ++G + + TNG + Sbjct: 85 IYDVSAILREKGIKTYLSTNGLL 107 >gi|2981659|pdb|1A0T|P Chain P, Sucrose-Specific Porin, With Bound Sucrose Molecules gi|2981660|pdb|1A0T|Q Chain Q, Sucrose-Specific Porin, With Bound Sucrose Molecules gi|2981661|pdb|1A0T|R Chain R, Sucrose-Specific Porin, With Bound Sucrose Molecules gi|3319010|pdb|1A0S|P Chain P, Sucrose-Specific Porin gi|3319011|pdb|1A0S|Q Chain Q, Sucrose-Specific Porin gi|3319012|pdb|1A0S|R Chain R, Sucrose-Specific Porin gi|31615806|pdb|1OH2|P Chain P, Sucrose-Specific Porin, With Bound Sucrose Molecules gi|31615808|pdb|1OH2|R Chain R, Sucrose-Specific Porin, With Bound Sucrose Molecules Length = 413 Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 23/39 (58%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 F G LW+G+ DR + + D+D V + GT GG Y+V Sbjct: 107 FKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDV 145 >gi|213617522|ref|ZP_03372348.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 59 Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 11/49 (22%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT 52 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDT 40 >gi|134332|sp|P22340|SCRY_SALTY RecName: Full=Sucrose porin; Flags: Precursor gi|48830|emb|CAA40656.1| sucrose porin [Salmonella enterica subsp. enterica serovar Typhimurium] gi|155143|gb|AAA98417.1| sucrose porin [Plasmid pUR400] Length = 505 Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 23/39 (58%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 F G LW+G+ DR + + D+D V + GT GG Y+V Sbjct: 199 FKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDV 237 >gi|229043184|ref|ZP_04190907.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus AH676] gi|228726146|gb|EEL77380.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus AH676] Length = 220 Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust. Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 20/158 (12%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ +E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P L ++ L+ L + G A+ET G+ + ID I +SPK Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110 Query: 137 AGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169 Q L KL +++ + +DFE Sbjct: 111 PPSSTMKTDFQRLDAIIQKLAGKDISLKVVVFDDYDFE 148 >gi|298529802|ref|ZP_07017205.1| Radical SAM domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511238|gb|EFI35141.1| Radical SAM domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 360 Score = 35.4 bits (80), Expect = 5.0, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG-- 145 + TGGEPLL+ D+ LI + +G + NGT+ P+ I S C + I G Sbjct: 69 IFTGGEPLLRPDIFELISYADSQGLRCVMAPNGTLITPENAKEIKSSGIQRCSISIDGPT 128 Query: 146 GQELKLV 152 QE L+ Sbjct: 129 AQEHDLL 135 >gi|228945040|ref|ZP_04107401.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814709|gb|EEM60969.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 220 Score = 35.4 bits (80), Expect = 5.1, Method: Compositional matrix adjust. Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 20/158 (12%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P+L ++ L+ L + G A+ET G+ + ID I +SPK Sbjct: 51 IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110 Query: 137 AGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169 Q+L KL +++ + +DFE Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFE 148 >gi|281355779|ref|ZP_06242273.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548] gi|281318659|gb|EFB02679.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548] Length = 325 Score = 35.4 bits (80), Expect = 5.2, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 2/82 (2%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R + CRFC G+ V+ L E + L GGEPLL Sbjct: 17 RCNLHCRFCGQS-KGMLAAGESELPVETWLRLAREVRALADTPEPEITLWGGEPLLYSGF 75 Query: 102 P-LIQALNKRGFEIAVETNGTI 122 P L + L + GF +A TNGT+ Sbjct: 76 PRLARRLKEEGFRVAAVTNGTL 97 >gi|228920154|ref|ZP_04083503.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839610|gb|EEM84902.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 220 Score = 35.4 bits (80), Expect = 5.2, Method: Compositional matrix adjust. Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 20/158 (12%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDIWSELVA 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P L ++ L+ L + G A+ET G+ + ID + +SPK Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLEIDEVTISPK 110 Query: 137 AGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169 Q+L KL +++ + +DFE Sbjct: 111 PPSSTMKTDFQKLDAMIQKLAGKDISLKVVVFDDYDFE 148 >gi|114566232|ref|YP_753386.1| radical SAM domain-containing protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337167|gb|ABI68015.1| radical SAM domain protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 333 Score = 35.4 bits (80), Expect = 5.2, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 44 SAQCR-FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101 + QC FCD + + +Q LIEE G R + +GGEPL++ D+ Sbjct: 8 TNQCNMFCDHCYRDAGARLEDELSTEQAKKLIEEIKKAG---FRIMIFSGGEPLMRPDIF 64 Query: 102 PLIQALNKRGFEIAVETNGTIEPPQ 126 L Q ++G + + TNG++ P+ Sbjct: 65 ELGQYATRQGLRVVMGTNGSLISPE 89 >gi|228907074|ref|ZP_04070938.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis IBL 200] gi|228852578|gb|EEM97368.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis IBL 200] Length = 220 Score = 35.4 bits (80), Expect = 5.3, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 15/120 (12%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ +E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKNQIRQMTAEDIWDELVT 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQ--GIDWICVSPK 136 G + + ++GG P L ++ L+ L + G A+ET G+ ID + +SPK Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQNWLLQIDEVTISPK 110 >gi|228914013|ref|ZP_04077635.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926472|ref|ZP_04089544.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229090395|ref|ZP_04221638.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus Rock3-42] gi|229183635|ref|ZP_04310858.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus BGSC 6E1] gi|228599878|gb|EEK57475.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus BGSC 6E1] gi|228692978|gb|EEL46696.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus Rock3-42] gi|228833296|gb|EEM78861.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845618|gb|EEM90647.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 220 Score = 35.4 bits (80), Expect = 5.4, Method: Compositional matrix adjust. Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 20/158 (12%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P+L ++ L+ L + G A+ET G+ + ID I +SPK Sbjct: 51 IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110 Query: 137 AGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169 Q+L KL +++ + +DFE Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFE 148 >gi|91203309|emb|CAJ72948.1| similar to heme d1 biosynthesis protein NirJ [Candidatus Kuenenia stuttgartiensis] Length = 629 Score = 35.4 bits (80), Expect = 5.5, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 17/89 (19%) Query: 42 RLSAQCRFCDTDFVGIQ-------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 R + QC C D + TK G +DQ+A+L +LTGGE Sbjct: 15 RCNLQCDHCYLDANALTKKSPYELDTKEGFKLIDQMAEL---------NPNLLLILTGGE 65 Query: 95 PLLQVDV-PLIQALNKRGFEIAVETNGTI 122 PLL+ D+ L +K+G + + TNG + Sbjct: 66 PLLRNDIYDLSHYASKKGMMVVLGTNGNV 94 >gi|228932724|ref|ZP_04095596.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826929|gb|EEM72691.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 220 Score = 35.4 bits (80), Expect = 5.7, Method: Compositional matrix adjust. Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 20/158 (12%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P+L ++ L+ L + G A+ET G+ + ID I +SPK Sbjct: 51 IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110 Query: 137 AGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169 Q+L KL +++ + +DFE Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFE 148 >gi|325298763|ref|YP_004258680.1| Radical SAM domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324318316|gb|ADY36207.1| Radical SAM domain protein [Bacteroides salanitronis DSM 18170] Length = 359 Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust. Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 3/108 (2%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R + CR C +D I G + + +++ + + +LTGGEPL++ D+ Sbjct: 39 RCNLHCRHCGSDCKKIAGYRD--MPKEDFLRVLDNVASHTDPHKVFIILTGGEPLVREDL 96 Query: 102 PLI-QALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 +A+ ++GF + TNG P+ ++ + + + + G +E Sbjct: 97 EACGRAIYEKGFPWGMVTNGLFLTPERLEGLIQAGMHTATVSLDGFKE 144 >gi|319790216|ref|YP_004151849.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1] gi|317114718|gb|ADU97208.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1] Length = 376 Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 16/87 (18%) Query: 42 RLSAQCRFCDTDFV-----GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 R + QC C + G T+ G+ +D +A L + VLTGGEPL Sbjct: 19 RCNLQCIHCRSASTMESEQGDFSTEDGKKLLDDIAKLSKPT----------VVLTGGEPL 68 Query: 97 LQVDV-PLIQALNKRGFEIAVETNGTI 122 L+ D+ L + K GF + + TNGT+ Sbjct: 69 LREDIWELAEYGTKLGFRMCIATNGTL 95 >gi|307594547|ref|YP_003900864.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307549748|gb|ADN49813.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429] Length = 503 Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%) Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 L+GGEP + D P++ +N+RGF A+ TNGT Sbjct: 186 ALSGGEPTVHRDFWPVLAEINRRGFYSAIATNGT 219 >gi|229195638|ref|ZP_04322404.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus m1293] gi|228587887|gb|EEK45939.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus m1293] Length = 220 Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust. Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 20/158 (12%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P+L ++ L+ L + G A+ET G+ + ID I +SPK Sbjct: 51 IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLEIDEITISPK 110 Query: 137 AGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169 Q+L KL +++ + +DFE Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFE 148 >gi|229138128|ref|ZP_04266726.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus BDRD-ST26] gi|228645473|gb|EEL01707.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus BDRD-ST26] Length = 220 Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust. Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 20/158 (12%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P+L ++ L+ L + G A+ET G+ + ID I +SPK Sbjct: 51 IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLEIDEITISPK 110 Query: 137 AGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169 Q+L KL +++ + +DFE Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFE 148 >gi|228957714|ref|ZP_04119458.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar pakistani str. T13001] gi|229126759|ref|ZP_04255771.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus BDRD-Cer4] gi|229144046|ref|ZP_04272462.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus BDRD-ST24] gi|229149643|ref|ZP_04277874.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus m1550] gi|296502023|ref|YP_003663723.1| organic radical activating protein [Bacillus thuringiensis BMB171] gi|228633853|gb|EEK90451.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus m1550] gi|228639443|gb|EEK95857.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus BDRD-ST24] gi|228656699|gb|EEL12525.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus BDRD-Cer4] gi|228801957|gb|EEM48830.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar pakistani str. T13001] gi|296323075|gb|ADH06003.1| organic radical activating protein [Bacillus thuringiensis BMB171] Length = 220 Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 15/120 (12%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ +E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P L ++ L+ L + G A+ET G+ + ID I +SPK Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110 >gi|221636246|ref|YP_002524122.1| radical SAM domain protein [Thermomicrobium roseum DSM 5159] gi|221157912|gb|ACM07030.1| radical SAM domain protein [Thermomicrobium roseum DSM 5159] Length = 365 Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 87 YCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 Y + GGEPLL+ D V L++ RG + TNG++ DWI +P + + G Sbjct: 62 YINVGGGEPLLRPDFVELMEYAIARGIGVKFSTNGSLIDEAVADWIARTPYLDVQISLDG 121 >gi|229100293|ref|ZP_04231179.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus Rock3-29] gi|229114880|ref|ZP_04244293.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus Rock1-3] gi|228668572|gb|EEL24001.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus Rock1-3] gi|228683123|gb|EEL37115.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus Rock3-29] Length = 220 Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 15/120 (12%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCSWCDSAFTW-DGSAKDQIRQMPAEDIWNELVE 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P+L ++ L+ L + G A+ET G+ + ID I +SPK Sbjct: 51 IGGENFSHVTISGGNPVLLKNIESLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110 >gi|213422146|ref|ZP_03355212.1| hypothetical protein Salmonentericaenterica_32183 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 43 Score = 35.0 bits (79), Expect = 6.5, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 11/49 (22%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT 52 Y I E+F TLQGEG G A+F R GC C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGC-----------PVGCAWCDT 40 >gi|229016691|ref|ZP_04173624.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus AH1273] gi|229022903|ref|ZP_04179423.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus AH1272] gi|228738438|gb|EEL88914.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus AH1272] gi|228744599|gb|EEL94668.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus AH1273] Length = 220 Score = 35.0 bits (79), Expect = 6.8, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 15/120 (12%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMSAEDIWNELVE 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P+L ++ L+ L + G A+ET G+ + ID + +SPK Sbjct: 51 IGGENFSHVTISGGNPVLLKNIESLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110 >gi|227327963|ref|ZP_03831987.1| putative pyruvate formate-lyase activating enzyme [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 316 Score = 35.0 bits (79), Expect = 7.0, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 3/110 (2%) Query: 47 CRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPL 103 CR C+T G G V +L ++I + + G L+GGE LQ D V L Sbjct: 98 CRKCETVCLSGALDVIGQEMTVTELMEIIMQDYPFYVSSGGGVTLSGGEMSLQTDFAVEL 157 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153 + A + AVET GT V+ D+K Q+ K +F Sbjct: 158 LTACKRMMINTAVETQGTTLKSHYSKLAAVTDLFLFDIKHIDTQQHKALF 207 >gi|116754318|ref|YP_843436.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanosaeta thermophila PT] gi|116665769|gb|ABK14796.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanosaeta thermophila PT] Length = 247 Score = 35.0 bits (79), Expect = 7.1, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 6/50 (12%) Query: 77 QWITGEKEGRYC----VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 Q I E G C VL+GGEPL Q D V + + ++ RG ++ +ETNG Sbjct: 65 QSILHEFSGSVCIDSVVLSGGEPLAQSDAVVAIAREVDVRGLDLGIETNG 114 >gi|21227448|ref|NP_633370.1| tRNA-modifying enzyme [Methanosarcina mazei Go1] gi|20905817|gb|AAM31042.1| Fe-S oxidoreductase [Methanosarcina mazei Go1] Length = 365 Score = 35.0 bits (79), Expect = 7.2, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + E+W+ G + + GEP +P LI+ KRGF + TNGT+ Sbjct: 166 NALRERWLEGNQPNNVAISLSGEPTFYPYLPELIEEYEKRGFTTFLVTNGTV 217 >gi|313498736|gb|ADR60102.1| ScrY [Pseudomonas putida BIRD-1] Length = 521 Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +++++F L H F LW+G+ DR + + D+D V + GT GG Sbjct: 195 NVRQVFAELD----HLAAFKGNSMFENATLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 250 Query: 65 YNV 67 Y+V Sbjct: 251 YDV 253 >gi|90422688|ref|YP_531058.1| glycyl-radical activating protein [Rhodopseudomonas palustris BisB18] gi|90104702|gb|ABD86739.1| Glycyl-radical enzyme activating [Rhodopseudomonas palustris BisB18] Length = 306 Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 56 GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFE 113 G KG V Q+ +++ + G L+GGEPL+Q D + L++A +G+ Sbjct: 102 GALTMKGRSMTVWQVMQELQKDATNYRRSGGGITLSGGEPLVQSDFALELLKACKDKGWS 161 Query: 114 IAVETNGTI 122 A+ET G + Sbjct: 162 TAMETTGNV 170 >gi|197118992|ref|YP_002139419.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase [Geobacter bemidjiensis Bem] gi|197088352|gb|ACH39623.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase [Geobacter bemidjiensis Bem] Length = 471 Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 7/82 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + QC FC D G +GT+ ++++++ L+E L+GGEP L+ D Sbjct: 100 DRCNLQCAFCFAD-AGPKGTED--PSLERISWLLERAMAAAGACSLQ--LSGGEPTLRDD 154 Query: 101 VP-LIQALNKRGFE-IAVETNG 120 +P +++A + GF I V TNG Sbjct: 155 LPEIVEAARRIGFSFIQVNTNG 176 >gi|224540942|ref|ZP_03681481.1| hypothetical protein CATMIT_00093 [Catenibacterium mitsuokai DSM 15897] gi|224526175|gb|EEF95280.1| hypothetical protein CATMIT_00093 [Catenibacterium mitsuokai DSM 15897] Length = 306 Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust. Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 +G V+++ D+ + E+ L+GGE ++Q D + L+ AL ++G +A+ET Sbjct: 110 EGEIKTVEEVVDICMQDIDFYEESNGGVTLSGGEAMVQYDFMMALVHALKEKGLHLAIET 169 Query: 119 NGTIE 123 G ++ Sbjct: 170 TGIVD 174 >gi|158337693|ref|YP_001518869.1| hypothetical protein AM1_4577 [Acaryochloris marina MBIC11017] gi|158307934|gb|ABW29551.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 324 Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 8/82 (9%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R +A+C FCD + G + D + +E+ G K Y TGGEPLL+ DV Sbjct: 13 RCNARCHFCDIWALD----PGKEADFDTIEHNLEDLKRLGVK---YVDFTGGEPLLRTDV 65 Query: 102 PLI-QALNKRGFEIAVETNGTI 122 I Q + GF ++ TN + Sbjct: 66 GRIYQTAKQLGFYTSMTTNTIL 87 >gi|290969108|ref|ZP_06560638.1| pyruvate formate-lyase 1-activating enzyme [Megasphaera genomosp. type_1 str. 28L] gi|290780868|gb|EFD93466.1| pyruvate formate-lyase 1-activating enzyme [Megasphaera genomosp. type_1 str. 28L] Length = 249 Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 9/87 (10%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEE--QWITGEKEGRYCVLTGGEPLLQVDV-- 101 +CR+C +G K Y + +D++ E ++ T K G ++GGEPLLQ D Sbjct: 35 RCRYCHNPETWQEG-KYSSYTLQYASDILREALRYRTYWKNGGGITVSGGEPLLQPDFVR 93 Query: 102 PLIQALNKRGFEIAVETNG----TIEP 124 L +RG ++T G T EP Sbjct: 94 ELFTLAKERGIHTVLDTAGNPFTTAEP 120 >gi|297155243|gb|ADI04955.1| radical SAM family protein [Streptomyces bingchenggensis BCW-1] Length = 170 Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 5/111 (4%) Query: 87 YCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144 V++GGEPL Q P+I+AL + G + +ETNGT+ P + + L Sbjct: 17 LIVISGGEPLNQQSRLEPVIRALREAGIAVEIETNGTVAPQAALAAAGIRFNVSPKLAHS 76 Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 G E + + P+V G F+ D LEE L + +N Sbjct: 77 GIAEKRRIVPEVLGEFTRLPGAAFKFVCATASD---LEEVDALVARHSLKN 124 >gi|227551205|ref|ZP_03981254.1| [formate-C-acetyltransferase]-activating enzyme [Enterococcus faecium TX1330] gi|257896172|ref|ZP_05675825.1| formate acetyltransferase activating enzyme [Enterococcus faecium Com12] gi|293377172|ref|ZP_06623380.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium PC4.1] gi|227179673|gb|EEI60645.1| [formate-C-acetyltransferase]-activating enzyme [Enterococcus faecium TX1330] gi|257832737|gb|EEV59158.1| formate acetyltransferase activating enzyme [Enterococcus faecium Com12] gi|292644192|gb|EFF62294.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium PC4.1] Length = 253 Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 15/89 (16%) Query: 46 QCRFC-DTDFVGIQGTKGGRYNVDQLADLIEE---QWITGEKEGRYCVLTGGEPLLQVD- 100 +C+FC + D I G G Y+ D+L D E W G+K G ++GGEPLLQ+D Sbjct: 35 RCQFCHNPDTWNIGG--GKEYSADELLDKAERFRPYW--GDKGG--ITVSGGEPLLQIDF 88 Query: 101 -VPLIQALNKRGFEIAVETNG---TIEPP 125 + L + +R ++T G T E P Sbjct: 89 LIELFKKAKERKMHTTLDTCGKPFTYEDP 117 >gi|146283853|ref|YP_001174006.1| heme d1 biosynthesis protein NirJ [Pseudomonas stutzeri A1501] gi|71841660|gb|AAZ43114.1| NirJ [Pseudomonas stutzeri A1501] gi|145572058|gb|ABP81164.1| heme d1 biosynthesis protein NirJ [Pseudomonas stutzeri A1501] Length = 393 Score = 34.7 bits (78), Expect = 8.5, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%) Query: 86 RYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 R +L+GGEPLL+ D+ L +GF +A+ TNGT+ Sbjct: 78 RVLILSGGEPLLRGDIFQLADYARDKGFFVALSTNGTL 115 >gi|225849867|ref|YP_002730101.1| heme d1 biosynthesis protein NirJ [Persephonella marina EX-H1] gi|225645943|gb|ACO04129.1| heme d1 biosynthesis protein NirJ [Persephonella marina EX-H1] Length = 362 Score = 34.7 bits (78), Expect = 8.6, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 5/91 (5%) Query: 43 LSAQCR-FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 L+ C FC + ++ G ++D++ I G K +L+GGEPL++ D+ Sbjct: 29 LTNACNLFCQHCYSAANLSRAGEPSIDEIRSQIPYLKEAGVK---VLILSGGEPLIREDI 85 Query: 102 PLIQALNK-RGFEIAVETNGTIEPPQGIDWI 131 I L K GF + + TNG + + I+ I Sbjct: 86 FDIANLFKENGFNVTLSTNGLLIDEKNIESI 116 >gi|268324255|emb|CBH37843.1| conserved hypothetical protein, radical SAM superfamily [uncultured archaeon] Length = 365 Score = 34.7 bits (78), Expect = 8.7, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 11/68 (16%) Query: 56 GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEI 114 G T+ G+ +DQ+A++ + I L+GGEPLL+ DV L + +G + Sbjct: 41 GELSTEEGKMLIDQIAEVSKPILI----------LSGGEPLLRADVFELARYATGKGLTV 90 Query: 115 AVETNGTI 122 A+ TNGT+ Sbjct: 91 AMGTNGTL 98 >gi|20088939|ref|NP_615014.1| tRNA-modifying enzyme [Methanosarcina acetivorans C2A] gi|19913785|gb|AAM03494.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 345 Score = 34.7 bits (78), Expect = 8.9, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + E+W+ G + + GEP +P LI+ KRGF + TNGT+ Sbjct: 142 NALRERWLEGNEPNNVAISLSGEPTFYPYLPELIEEYEKRGFTTFLVTNGTV 193 >gi|289580100|ref|YP_003478566.1| molybdenum cofactor biosynthesis protein A [Natrialba magadii ATCC 43099] gi|289529653|gb|ADD04004.1| molybdenum cofactor biosynthesis protein A [Natrialba magadii ATCC 43099] Length = 341 Score = 34.7 bits (78), Expect = 9.1, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 8/105 (7%) Query: 41 DRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + C +C + +G +G + + + D++ + E + TGGEP+L+ Sbjct: 19 DRCNFDCVYCHNEGLGDTRGPMDPQDDEMETDDVVRFLEVAAEFDVDAVKFTGGEPMLRQ 78 Query: 100 DVPLIQALNKRGFEIAVETNGTIEPPQ-------GIDWICVSPKA 137 D+ I E+++ TNGT P + G+D + VS A Sbjct: 79 DLTEIIERTPEQMEVSLTTNGTFLPGRAEELVDAGLDRVNVSQDA 123 >gi|319789546|ref|YP_004151179.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1] gi|317114048|gb|ADU96538.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1] Length = 219 Score = 34.7 bits (78), Expect = 9.5, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 11/52 (21%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF 54 + +I E F+++QGEG G A F R C S CRFCDT + Sbjct: 1 MITICETFVSVQGEGLTVGTPAFFIRTGKC-----------SVGCRFCDTKY 41 >gi|327400235|ref|YP_004341074.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Archaeoglobus veneficus SNP6] gi|327315743|gb|AEA46359.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Archaeoglobus veneficus SNP6] Length = 232 Score = 34.7 bits (78), Expect = 9.6, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 13/97 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 +C FC + GTK +V L I E ++ C+ TGGEPL+Q L + Sbjct: 30 RCPFCHNHELLAGGTK---TDVSGLIGKISENYLID----GVCI-TGGEPLMQNIEDLCK 81 Query: 106 ALNKRGFEIAVETNGTIEPPQG-----IDWICVSPKA 137 L GF + ++TNG G +D++ + K Sbjct: 82 KLKDAGFAVKIDTNGYYTEELGKILDYVDYVAIDLKT 118 >gi|195541852|gb|ACF98054.1| putative heme D1 biosynthesis protein NirJ [uncultured bacterium 888] Length = 411 Score = 34.7 bits (78), Expect = 9.6, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 16/97 (16%) Query: 42 RLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 R + CR C DT+F G T +D L E R +L+GGEPL Sbjct: 35 RCNLACRHCYSISADTNFPGELSTAEVFAVLDDLY----------ASEVRVLILSGGEPL 84 Query: 97 LQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132 L+ D+ +++ GF I + +NGT+ + I I Sbjct: 85 LRPDLFRIVRRAKSMGFYIGLSSNGTLIGAENITSIA 121 >gi|194016213|ref|ZP_03054827.1| molybdenum cofactor biosynthesis protein A [Bacillus pumilus ATCC 7061] gi|194011686|gb|EDW21254.1| molybdenum cofactor biosynthesis protein A [Bacillus pumilus ATCC 7061] Length = 305 Score = 34.7 bits (78), Expect = 9.6, Method: Compositional matrix adjust. Identities = 21/38 (55%), Positives = 29/38 (76%), Gaps = 3/38 (7%) Query: 90 LTGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEP 124 +TGGEPL++ D+P LI+ L+K G E IA+ TNGT+ P Sbjct: 42 ITGGEPLMRKDLPILIEKLSKIPGIEDIAMTTNGTLLP 79 >gi|257898809|ref|ZP_05678462.1| formate acetyltransferase activating enzyme [Enterococcus faecium Com15] gi|293570288|ref|ZP_06681357.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E980] gi|257836721|gb|EEV61795.1| formate acetyltransferase activating enzyme [Enterococcus faecium Com15] gi|291609695|gb|EFF38956.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E980] Length = 253 Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 15/89 (16%) Query: 46 QCRFC-DTDFVGIQGTKGGRYNVDQLADLIEE---QWITGEKEGRYCVLTGGEPLLQVD- 100 +C+FC + D I G G Y+ D+L D E W G+K G ++GGEPLLQ+D Sbjct: 35 RCQFCHNPDTWNIGG--GKEYSADELLDKAERFRPYW--GDKGG--ITVSGGEPLLQIDF 88 Query: 101 -VPLIQALNKRGFEIAVETNG---TIEPP 125 + L + +R ++T G T E P Sbjct: 89 LIELFKKAKEREMHTTLDTCGKPFTYEEP 117 >gi|69248399|ref|ZP_00604735.1| Formate acetyltransferase activating enzyme [Enterococcus faecium DO] gi|257878034|ref|ZP_05657687.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,230,933] gi|257881180|ref|ZP_05660833.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,502] gi|257884843|ref|ZP_05664496.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,501] gi|257889767|ref|ZP_05669420.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,410] gi|257892296|ref|ZP_05671949.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,408] gi|258616472|ref|ZP_05714242.1| pyruvate formate-lyase activating enzyme [Enterococcus faecium DO] gi|260559084|ref|ZP_05831270.1| formate acetyltransferase activating enzyme [Enterococcus faecium C68] gi|293563436|ref|ZP_06677885.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1162] gi|293568151|ref|ZP_06679487.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1071] gi|294622318|ref|ZP_06701361.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium U0317] gi|314938046|ref|ZP_07845356.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133a04] gi|314941968|ref|ZP_07848829.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133C] gi|314948779|ref|ZP_07852151.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0082] gi|314951797|ref|ZP_07854836.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133A] gi|314991796|ref|ZP_07857254.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133B] gi|314995837|ref|ZP_07860924.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133a01] gi|68194435|gb|EAN08938.1| Formate acetyltransferase activating enzyme [Enterococcus faecium DO] gi|257812262|gb|EEV41020.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,230,933] gi|257816838|gb|EEV44166.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,502] gi|257820681|gb|EEV47829.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,501] gi|257826127|gb|EEV52753.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,410] gi|257828675|gb|EEV55282.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,408] gi|260074841|gb|EEW63157.1| formate acetyltransferase activating enzyme [Enterococcus faecium C68] gi|291589141|gb|EFF20953.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1071] gi|291598210|gb|EFF29308.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium U0317] gi|291604697|gb|EFF34182.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1162] gi|313589941|gb|EFR68786.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133a01] gi|313593607|gb|EFR72452.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133B] gi|313596076|gb|EFR74921.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133A] gi|313599220|gb|EFR78065.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133C] gi|313642621|gb|EFS07201.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133a04] gi|313644845|gb|EFS09425.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0082] Length = 253 Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 15/89 (16%) Query: 46 QCRFC-DTDFVGIQGTKGGRYNVDQLADLIEE---QWITGEKEGRYCVLTGGEPLLQVD- 100 +C+FC + D I G G Y D+L D E W G+K G ++GGEPLLQ+D Sbjct: 35 RCQFCHNPDTWNIGG--GKEYTADELLDKAERFRPYW--GDKGG--ITVSGGEPLLQIDF 88 Query: 101 -VPLIQALNKRGFEIAVETNG---TIEPP 125 + L + +R ++T G T E P Sbjct: 89 LIELFKKAKERKMHTTLDTCGKPFTYEEP 117 >gi|218780153|ref|YP_002431471.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfatibacillum alkenivorans AK-01] gi|218761537|gb|ACL04003.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfatibacillum alkenivorans AK-01] Length = 230 Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 6/57 (10%) Query: 71 ADLIEEQWITG---EKEGRY--CVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 A +I+ W+ E++G V+TGGEP L D + + A+ GFE+ ++TNG+ Sbjct: 45 AQVIKNNWVMSFLKERKGFLDGVVITGGEPTLHKDLMDFMAAIKDMGFELKLDTNGS 101 Searching..................................................done Results from round 2 >gi|254780202|ref|YP_003064615.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter asiaticus str. psy62] gi|254039879|gb|ACT56675.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter asiaticus str. psy62] Length = 211 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 211/211 (100%), Positives = 211/211 (100%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT Sbjct: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG Sbjct: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF Sbjct: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR Sbjct: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 >gi|315122629|ref|YP_004063118.1| hypothetical protein CKC_04405 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496031|gb|ADR52630.1| hypothetical protein CKC_04405 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 211 Score = 350 bits (898), Expect = 9e-95, Method: Composition-based stats. Identities = 172/211 (81%), Positives = 188/211 (89%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MKLYS+KEIFLTLQGEG GRVAVFCRFSGCNLWSGRE+DRL AQCRFCDTDFVG +GT Sbjct: 1 MKLYSVKEIFLTLQGEGAQVGRVAVFCRFSGCNLWSGREKDRLFAQCRFCDTDFVGTKGT 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GGRY+ +QLADLI WI EKE RYCVLTGGEPLLQVD LI+ALNKR F I+VETNG Sbjct: 61 MGGRYSAEQLADLIASAWIPEEKEERYCVLTGGEPLLQVDSALIKALNKRNFTISVETNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 TI+PP+GIDWICVSPKAGCDLK+K GQELKLVFPQV+ PENYI FDF+ FSLQPMDG F Sbjct: 121 TIKPPEGIDWICVSPKAGCDLKVKNGQELKLVFPQVDAPPENYIDFDFDIFSLQPMDGSF 180 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 L+ENTNLAISYCF+NPKWR+S+QTHKFIGIR Sbjct: 181 LKENTNLAISYCFKNPKWRVSLQTHKFIGIR 211 >gi|92118709|ref|YP_578438.1| hypothetical protein Nham_3243 [Nitrobacter hamburgensis X14] gi|91801603|gb|ABE63978.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 210 Score = 344 bits (883), Expect = 5e-93, Method: Composition-based stats. Identities = 141/209 (67%), Positives = 164/209 (78%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG+ GT+GG Sbjct: 3 YAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWSGREEDRTSAICRFCDTDFVGMDGTRGG 62 Query: 64 RYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY D+LAD + QW TG RY VLTGGEPLLQVD + AL+ RGFEI +ETNGTI Sbjct: 63 RYAAADELADTVAAQW-TGSAPHRYAVLTGGEPLLQVDKAFVDALHARGFEIGIETNGTI 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 PP GIDW+CVSPKAG DL++ G ELKLV+PQ PE++ FERFSLQPMDGP Sbjct: 122 VPPDGIDWLCVSPKAGADLRVTKGHELKLVYPQAGARPEDFKDLAFERFSLQPMDGPDAA 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT AI YC ++P+WRLS+QTHK +GIR Sbjct: 182 DNTARAIDYCMRHPQWRLSLQTHKTLGIR 210 >gi|75676803|ref|YP_319224.1| hypothetical protein Nwi_2619 [Nitrobacter winogradskyi Nb-255] gi|74421673|gb|ABA05872.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 210 Score = 343 bits (881), Expect = 9e-93, Method: Composition-based stats. Identities = 140/209 (66%), Positives = 163/209 (77%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR AVFCRFSGCNLWSGRE+DR SA CRFCDTDFVG GT GG Sbjct: 3 YAVKEIFLTLQGEGAHAGRAAVFCRFSGCNLWSGREEDRASATCRFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY + D LAD + QW G RY VLTGGEPLLQVD + AL+ RGFEI +ETNGT+ Sbjct: 63 RYASADALADTVAGQW-AGPAAHRYAVLTGGEPLLQVDKAFVDALHARGFEIGIETNGTL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 PP GIDW+CVSPKAG DL+I+ G ELKLV+PQ + PE++ F+RFSLQPMDGP Sbjct: 122 APPDGIDWLCVSPKAGADLRIRRGHELKLVYPQADARPEDFADLAFDRFSLQPMDGPDAA 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 ENT A+ YC ++P+WRLS+QTHK +GIR Sbjct: 182 ENTARAVDYCLRHPQWRLSLQTHKTLGIR 210 >gi|192289792|ref|YP_001990397.1| hypothetical protein Rpal_1382 [Rhodopseudomonas palustris TIE-1] gi|192283541|gb|ACE99921.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 210 Score = 340 bits (873), Expect = 8e-92, Method: Composition-based stats. Identities = 139/209 (66%), Positives = 167/209 (79%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR AVFCRF+GCNLW+GREQDR A C+FCDTDF+G GT GG Sbjct: 3 YAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWTGREQDRDQATCKFCDTDFIGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY + + LAD I EQW+ G+ RY V+TGGEPLLQ+D LI AL+ RGF I VETNGTI Sbjct: 63 RYASAEHLADTIAEQWV-GDARDRYVVITGGEPLLQLDGELITALHARGFAIGVETNGTI 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 EPP GIDW+CVSPKAG +L+I+ G ELKLV+PQ + PE + +FERFSLQPMDGP + Sbjct: 122 EPPAGIDWLCVSPKAGAELRIRRGDELKLVYPQPDAMPEEFAALEFERFSLQPMDGPDRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT AI+YC ++P+WRLS+QTHK GIR Sbjct: 182 DNTTRAIAYCLKHPQWRLSLQTHKITGIR 210 >gi|27377594|ref|NP_769123.1| hypothetical protein bll2483 [Bradyrhizobium japonicum USDA 110] gi|27350739|dbj|BAC47748.1| bll2483 [Bradyrhizobium japonicum USDA 110] Length = 210 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 140/209 (66%), Positives = 161/209 (77%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR +VFCRF+GCNLWSGRE DR A C+FCDTDFVG GT GG Sbjct: 3 YAVKEIFLTLQGEGAHAGRASVFCRFAGCNLWSGREADRQDATCKFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY + +LAD I QW T + RY VLTGGEPLLQVD LI AL+ RGFEI VETNGTI Sbjct: 63 RYASAVELADTIAAQW-TASNDNRYVVLTGGEPLLQVDDALIDALHARGFEIGVETNGTI 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P G+DWICVSPK G +L ++ G ELKLV+PQ +PE + G FERFSLQPMDGP + Sbjct: 122 AAPDGLDWICVSPKGGSELVLRRGHELKLVYPQALAAPETFEGLAFERFSLQPMDGPEVA 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 ENT AI YC ++P+WRLSVQTHK +GIR Sbjct: 182 ENTARAIDYCLRHPQWRLSVQTHKSLGIR 210 >gi|154253588|ref|YP_001414412.1| hypothetical protein Plav_3149 [Parvibaculum lavamentivorans DS-1] gi|154157538|gb|ABS64755.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1] Length = 210 Score = 338 bits (868), Expect = 3e-91, Method: Composition-based stats. Identities = 135/209 (64%), Positives = 155/209 (74%), Gaps = 1/209 (0%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +YS+KEIF TLQGEG +AGR +VFCRFSGCNLWSGRE+DR A C FCDTDFVG G G Sbjct: 1 MYSVKEIFYTLQGEGANAGRPSVFCRFSGCNLWSGREEDRADAVCTFCDTDFVGTNGEGG 60 Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 G++ +V LAD IE+ W +G R+ V TGGEPLLQ+D PLI AL+ RGFEIAVETNGT Sbjct: 61 GKFRDVAALADAIEKTWESGAAHNRFVVCTGGEPLLQLDAPLIAALHSRGFEIAVETNGT 120 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 I P+GIDWICVSPKA +LK G ELKLV+PQ PE + DF F LQPMDG Sbjct: 121 IVAPEGIDWICVSPKADAELKQTSGHELKLVYPQHKAQPERFEQLDFRYFYLQPMDGADA 180 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 EENT A +YC +PKWRLS+QTHK IGI Sbjct: 181 EENTRAATAYCLAHPKWRLSLQTHKLIGI 209 >gi|39934265|ref|NP_946541.1| hypothetical protein RPA1190 [Rhodopseudomonas palustris CGA009] gi|39648113|emb|CAE26633.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 210 Score = 338 bits (867), Expect = 3e-91, Method: Composition-based stats. Identities = 139/209 (66%), Positives = 167/209 (79%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR AVFCRF+GCNLW+GREQDR A C+FCDTDF+G GT GG Sbjct: 3 YAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWTGREQDRDQATCKFCDTDFIGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY + + LAD I EQW+ G+ RY V+TGGEPLLQ+D LI AL+ RGF I VETNGTI Sbjct: 63 RYASAEHLADTIAEQWV-GDARDRYVVITGGEPLLQLDGELITALHARGFAIGVETNGTI 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 EPP GIDW+CVSPKAG +L+I+ G ELKLV+PQ + PE + +FERFSLQPMDGP + Sbjct: 122 EPPVGIDWLCVSPKAGAELRIRRGDELKLVYPQPDAMPEEFAALEFERFSLQPMDGPERD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT AI+YC ++P+WRLS+QTHK GIR Sbjct: 182 DNTTRAIAYCLKHPQWRLSLQTHKITGIR 210 >gi|53717820|ref|YP_106806.1| hypothetical protein BPSL0178 [Burkholderia pseudomallei K96243] gi|53724959|ref|YP_101992.1| hypothetical protein BMA0153 [Burkholderia mallei ATCC 23344] gi|67642462|ref|ZP_00441218.1| organic radical activating enzyme [Burkholderia mallei GB8 horse 4] gi|76808972|ref|YP_331771.1| GntS [Burkholderia pseudomallei 1710b] gi|121598296|ref|YP_994090.1| hypothetical protein BMASAVP1_A2794 [Burkholderia mallei SAVP1] gi|124385117|ref|YP_001028247.1| hypothetical protein BMA10229_A2285 [Burkholderia mallei NCTC 10229] gi|126439185|ref|YP_001057215.1| organic radical activating protein [Burkholderia pseudomallei 668] gi|126450309|ref|YP_001081890.1| hypothetical protein BMA10247_2364 [Burkholderia mallei NCTC 10247] gi|134284085|ref|ZP_01770779.1| conserved hypothetical protein [Burkholderia pseudomallei 305] gi|167717531|ref|ZP_02400767.1| hypothetical protein BpseD_00837 [Burkholderia pseudomallei DM98] gi|167736572|ref|ZP_02409346.1| hypothetical protein Bpse14_00837 [Burkholderia pseudomallei 14] gi|167813673|ref|ZP_02445353.1| hypothetical protein Bpse9_00961 [Burkholderia pseudomallei 91] gi|167822191|ref|ZP_02453662.1| hypothetical protein Bpseu9_00842 [Burkholderia pseudomallei 9] gi|167892283|ref|ZP_02479685.1| hypothetical protein Bpse7_00882 [Burkholderia pseudomallei 7894] gi|167900778|ref|ZP_02487983.1| hypothetical protein BpseN_00787 [Burkholderia pseudomallei NCTC 13177] gi|167917042|ref|ZP_02504133.1| hypothetical protein BpseBC_00742 [Burkholderia pseudomallei BCC215] gi|217424912|ref|ZP_03456408.1| conserved hypothetical protein [Burkholderia pseudomallei 576] gi|226194613|ref|ZP_03790208.1| conserved hypothetical protein [Burkholderia pseudomallei Pakistan 9] gi|237810350|ref|YP_002894801.1| radical SAM domain protein [Burkholderia pseudomallei MSHR346] gi|251767984|ref|ZP_02269071.2| conserved hypothetical protein [Burkholderia mallei PRL-20] gi|254176794|ref|ZP_04883451.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399] gi|254182243|ref|ZP_04888840.1| conserved hypothetical protein [Burkholderia pseudomallei 1655] gi|254188167|ref|ZP_04894679.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur 52237] gi|254203672|ref|ZP_04910032.1| conserved hypothetical protein [Burkholderia mallei FMH] gi|254208648|ref|ZP_04914996.1| conserved hypothetical protein [Burkholderia mallei JHU] gi|254258885|ref|ZP_04949939.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a] gi|254360298|ref|ZP_04976568.1| conserved hypothetical protein [Burkholderia mallei 2002721280] gi|52208234|emb|CAH34165.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] gi|52428382|gb|AAU48975.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344] gi|76578425|gb|ABA47900.1| GntS [Burkholderia pseudomallei 1710b] gi|121227106|gb|ABM49624.1| conserved hypothetical protein [Burkholderia mallei SAVP1] gi|124293137|gb|ABN02406.1| conserved hypothetical protein [Burkholderia mallei NCTC 10229] gi|126218678|gb|ABN82184.1| conserved hypothetical protein [Burkholderia pseudomallei 668] gi|126243179|gb|ABO06272.1| conserved hypothetical protein [Burkholderia mallei NCTC 10247] gi|134244537|gb|EBA44641.1| conserved hypothetical protein [Burkholderia pseudomallei 305] gi|147745184|gb|EDK52264.1| conserved hypothetical protein [Burkholderia mallei FMH] gi|147750524|gb|EDK57593.1| conserved hypothetical protein [Burkholderia mallei JHU] gi|148029538|gb|EDK87443.1| conserved hypothetical protein [Burkholderia mallei 2002721280] gi|157935847|gb|EDO91517.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur 52237] gi|160697835|gb|EDP87805.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399] gi|184212781|gb|EDU09824.1| conserved hypothetical protein [Burkholderia pseudomallei 1655] gi|217391932|gb|EEC31958.1| conserved hypothetical protein [Burkholderia pseudomallei 576] gi|225933314|gb|EEH29306.1| conserved hypothetical protein [Burkholderia pseudomallei Pakistan 9] gi|237506322|gb|ACQ98640.1| radical SAM domain protein [Burkholderia pseudomallei MSHR346] gi|238523620|gb|EEP87057.1| organic radical activating enzyme [Burkholderia mallei GB8 horse 4] gi|243061139|gb|EES43325.1| conserved hypothetical protein [Burkholderia mallei PRL-20] gi|254217574|gb|EET06958.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a] Length = 210 Score = 336 bits (863), Expect = 1e-90, Method: Composition-based stats. Identities = 119/210 (56%), Positives = 147/210 (70%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR A CRFCDTDFVG G Sbjct: 1 MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDGAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + LA I W GE R+ V TGGEP+LQ+D PL+ AL+ GF IA+ETNG Sbjct: 61 GGKFKDAASLAARIASLWPAGEAY-RFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 180 RELNTRLAIDWCKRHPRWRLSMQTHKYLNI 209 >gi|126452181|ref|YP_001064455.1| hypothetical protein BURPS1106A_0172 [Burkholderia pseudomallei 1106a] gi|167843783|ref|ZP_02469291.1| hypothetical protein BpseB_00735 [Burkholderia pseudomallei B7210] gi|167909000|ref|ZP_02496091.1| hypothetical protein Bpse112_00785 [Burkholderia pseudomallei 112] gi|242315880|ref|ZP_04814896.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b] gi|254197017|ref|ZP_04903441.1| conserved hypothetical protein [Burkholderia pseudomallei S13] gi|254295716|ref|ZP_04963173.1| conserved hypothetical protein [Burkholderia pseudomallei 406e] gi|126225823|gb|ABN89363.1| conserved hypothetical protein [Burkholderia pseudomallei 1106a] gi|157806282|gb|EDO83452.1| conserved hypothetical protein [Burkholderia pseudomallei 406e] gi|169653760|gb|EDS86453.1| conserved hypothetical protein [Burkholderia pseudomallei S13] gi|242139119|gb|EES25521.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b] Length = 210 Score = 336 bits (862), Expect = 1e-90, Method: Composition-based stats. Identities = 119/210 (56%), Positives = 147/210 (70%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR A CRFCDTDFVG G Sbjct: 1 MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDGAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + LA I W GE R+ V TGGEP+LQ+D PL+ AL+ GF IA+ETNG Sbjct: 61 GGKFEDAASLAARIASLWPAGEAY-RFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 180 RELNTRLAIDWCKRHPRWRLSMQTHKYLNI 209 >gi|167834987|ref|ZP_02461870.1| hypothetical protein Bpse38_00765 [Burkholderia thailandensis MSMB43] Length = 210 Score = 335 bits (861), Expect = 2e-90, Method: Composition-based stats. Identities = 119/210 (56%), Positives = 148/210 (70%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR A CRFCDTDFVG G Sbjct: 1 MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDGAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + LA+ I W GE R+ V TGGEP+LQ+D PL+ AL+ GF IA+ETNG Sbjct: 61 GGKFKDAASLAEKIASLWPAGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQHLADYAKLDFEHFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 180 RELNTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|311106693|ref|YP_003979546.1| radical SAM superfamily protein 3 [Achromobacter xylosoxidans A8] gi|310761382|gb|ADP16831.1| radical SAM superfamily protein 3 [Achromobacter xylosoxidans A8] Length = 226 Score = 335 bits (861), Expect = 2e-90, Method: Composition-based stats. Identities = 128/210 (60%), Positives = 152/210 (72%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS KEIF TLQGEG HAGR AVFCRF+GCNLW+GRE DR SA C FCDTDF+G G Sbjct: 17 MTYSAKEIFKTLQGEGAHAGRAAVFCRFAGCNLWTGRESDRASAACTFCDTDFIGTDGEG 76 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + LAD I W G + RY V TGGEPLLQ+D PL+ A++ RGF IA+ETNG Sbjct: 77 GGKFATPELLADAIAAAWGPGATD-RYVVFTGGEPLLQLDAPLLTAVHARGFTIAIETNG 135 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 TI+PP GIDWICVSPK + ++ G ELKLV+PQ N PE + DF+ F LQPMDGP Sbjct: 136 TIKPPAGIDWICVSPKGTAPVVLERGDELKLVYPQANARPEAFAHLDFDHFFLQPMDGPA 195 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A+ YC Q+P+WRLS+QTHK+IGI Sbjct: 196 RAANTEQAVQYCMQHPQWRLSLQTHKYIGI 225 >gi|209515825|ref|ZP_03264687.1| Radical SAM domain protein [Burkholderia sp. H160] gi|209503673|gb|EEA03667.1| Radical SAM domain protein [Burkholderia sp. H160] Length = 210 Score = 335 bits (860), Expect = 2e-90, Method: Composition-based stats. Identities = 124/210 (59%), Positives = 151/210 (71%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG+Y D+L +I QW GE E R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG Sbjct: 61 GGKYRTPDELVAMIASQWPQGEGE-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP Sbjct: 120 SLPVLDTIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + NT LAI +C ++PKWRLS+QTHK++ I Sbjct: 180 RDLNTKLAIDWCKRHPKWRLSMQTHKYLNI 209 >gi|221201867|ref|ZP_03574904.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] gi|221207627|ref|ZP_03580635.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221172473|gb|EEE04912.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221178287|gb|EEE10697.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] Length = 210 Score = 335 bits (859), Expect = 3e-90, Method: Composition-based stats. Identities = 120/210 (57%), Positives = 149/210 (70%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAQAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + D L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG Sbjct: 61 GGKFKDADALVATIASLWPDGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|83720295|ref|YP_440696.1| hypothetical protein BTH_I0138 [Burkholderia thailandensis E264] gi|167579367|ref|ZP_02372241.1| hypothetical protein BthaT_14560 [Burkholderia thailandensis TXDOH] gi|167617468|ref|ZP_02386099.1| hypothetical protein BthaB_14260 [Burkholderia thailandensis Bt4] gi|257140656|ref|ZP_05588918.1| hypothetical protein BthaA_15810 [Burkholderia thailandensis E264] gi|83654120|gb|ABC38183.1| conserved hypothetical protein [Burkholderia thailandensis E264] Length = 210 Score = 335 bits (859), Expect = 3e-90, Method: Composition-based stats. Identities = 119/210 (56%), Positives = 147/210 (70%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR A CRFCDTDFVG G Sbjct: 1 MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRGDAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + LA I W GE R+ V TGGEP+LQ+D PL+ AL+ GF IA+ETNG Sbjct: 61 GGKFKDAASLAAKIASLWPPGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 180 RELNTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|91975780|ref|YP_568439.1| hypothetical protein RPD_1300 [Rhodopseudomonas palustris BisB5] gi|91682236|gb|ABE38538.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 210 Score = 335 bits (859), Expect = 3e-90, Method: Composition-based stats. Identities = 142/209 (67%), Positives = 164/209 (78%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR +VFCRF+GCNLW+GREQDR A CRFCDTDFVG GT GG Sbjct: 3 YAVKEIFLTLQGEGAHAGRASVFCRFAGCNLWTGREQDRDQAACRFCDTDFVGTDGTLGG 62 Query: 64 RYNVD-QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY +LA I QW E + RY V+TGGEPLLQ+D LI AL K+GF I VETNGTI Sbjct: 63 RYTDAGELAGAIAAQWAGAELD-RYVVITGGEPLLQLDAELIAALQKQGFAIGVETNGTI 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 EPP GIDW+CVSPKAG +L++K G ELKLV+PQ PE + DFERFSLQPMDGP + Sbjct: 122 EPPPGIDWLCVSPKAGAELRVKRGNELKLVYPQPGAMPEQFAALDFERFSLQPMDGPARD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 E+T LAI+YC ++P+WRLSVQTHK IGIR Sbjct: 182 EHTRLAIAYCLRHPQWRLSVQTHKTIGIR 210 >gi|85714274|ref|ZP_01045262.1| hypothetical protein NB311A_15022 [Nitrobacter sp. Nb-311A] gi|85698721|gb|EAQ36590.1| hypothetical protein NB311A_15022 [Nitrobacter sp. Nb-311A] Length = 210 Score = 334 bits (858), Expect = 4e-90, Method: Composition-based stats. Identities = 142/209 (67%), Positives = 161/209 (77%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y+IKE+FLTLQGEG HAGR AVFCRFSGCNLWSGRE+DR SA C FCDTDFVG GT GG Sbjct: 3 YAIKEVFLTLQGEGAHAGRAAVFCRFSGCNLWSGREKDRASATCAFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY D LA+ + QWI G RY VLTGGEPLLQVD I AL+ R FEI +ETNGTI Sbjct: 63 RYDTADALAETVAAQWI-GPAAHRYAVLTGGEPLLQVDKAFIDALHARRFEIGIETNGTI 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 PP GIDW+CVSPKAG DL++ G ELKLV+PQ N+ PE++ FERFSLQPMDGP Sbjct: 122 VPPDGIDWLCVSPKAGADLRVTKGHELKLVYPQENIRPEDFKDLAFERFSLQPMDGPDAA 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT AI YC ++P+WRLS+QTHK IGIR Sbjct: 182 DNTARAIDYCLRHPQWRLSLQTHKTIGIR 210 >gi|295675134|ref|YP_003603658.1| Radical SAM domain protein [Burkholderia sp. CCGE1002] gi|295434977|gb|ADG14147.1| Radical SAM domain protein [Burkholderia sp. CCGE1002] Length = 210 Score = 334 bits (858), Expect = 4e-90, Method: Composition-based stats. Identities = 123/210 (58%), Positives = 151/210 (71%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG+Y D+L +I QW GE E R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG Sbjct: 61 GGKYRTPDELVAMIASQWPQGEGE-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP Sbjct: 120 SLPVLDTIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 180 RDINTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|86748323|ref|YP_484819.1| hypothetical protein RPB_1198 [Rhodopseudomonas palustris HaA2] gi|86571351|gb|ABD05908.1| Radical SAM [Rhodopseudomonas palustris HaA2] Length = 210 Score = 334 bits (857), Expect = 5e-90, Method: Composition-based stats. Identities = 138/209 (66%), Positives = 167/209 (79%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR +VFCRF+GCNLW+GREQDR A C+FCDTDFVG GT GG Sbjct: 3 YAVKEIFLTLQGEGAHAGRASVFCRFAGCNLWTGREQDRHDAVCQFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY + +LAD I QW+ + + RY V+TGGEPLLQ+D LI AL+K+GFE+ VETNGTI Sbjct: 63 RYGDAGKLADTIAAQWVGADTD-RYVVITGGEPLLQLDAELIDALHKQGFEVGVETNGTI 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 EPP GIDW+CVSPKAG ++++ G ELKLV+PQ + PE + DFERFSLQPMDGP + Sbjct: 122 EPPAGIDWLCVSPKAGTQIRVQCGNELKLVYPQPDAMPEQFTSLDFERFSLQPMDGPDRD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT AI YC ++P+WRLSVQTHK IGIR Sbjct: 182 DNTRRAIDYCLRHPQWRLSVQTHKVIGIR 210 >gi|238028936|ref|YP_002913167.1| hypothetical protein bglu_1g34010 [Burkholderia glumae BGR1] gi|237878130|gb|ACR30463.1| Hypothetical protein bglu_1g34010 [Burkholderia glumae BGR1] Length = 210 Score = 334 bits (857), Expect = 5e-90, Method: Composition-based stats. Identities = 122/210 (58%), Positives = 150/210 (71%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR SA CRFCDTDFVG G Sbjct: 1 MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDSAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + LAD + W GE R+ V TGGEP+LQ+D PL+ AL+ RGFEIA+ETNG Sbjct: 61 GGKFRTPELLADQVAALWPAGEAH-RFVVCTGGEPMLQLDQPLVDALHARGFEIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP Sbjct: 120 SLPVLDTIDWICVSPKADAPLVVTRGHELKVVIPQDNQRLADYARLDFEHFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 180 RELNTRLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|316932735|ref|YP_004107717.1| Radical SAM domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315600449|gb|ADU42984.1| Radical SAM domain protein [Rhodopseudomonas palustris DX-1] Length = 210 Score = 334 bits (857), Expect = 6e-90, Method: Composition-based stats. Identities = 141/209 (67%), Positives = 164/209 (78%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR AVFCRF+GCNLW+GREQDR A C+FCDTDF+G GT GG Sbjct: 3 YAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWTGREQDRDEATCKFCDTDFIGTDGTLGG 62 Query: 64 RYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY + LAD I EQW TG+ RY V+TGGEPLLQ+D LI AL+ RGF I VETNGTI Sbjct: 63 RYAGAELLADTIAEQW-TGDPRKRYVVITGGEPLLQLDGELIAALHTRGFAIGVETNGTI 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 EPP GIDW+CVSPKAG +L+I+ G ELKLV+PQ PE + DFERFSLQPMDGP + Sbjct: 122 EPPDGIDWLCVSPKAGAELRIRRGDELKLVYPQPGAMPEQFAALDFERFSLQPMDGPERD 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT AI+YC +P+WRLS+QTHK GIR Sbjct: 182 DNTTRAIAYCLMHPQWRLSLQTHKITGIR 210 >gi|167561072|ref|ZP_02353988.1| hypothetical protein BoklE_00844 [Burkholderia oklahomensis EO147] Length = 210 Score = 334 bits (857), Expect = 6e-90, Method: Composition-based stats. Identities = 118/210 (56%), Positives = 148/210 (70%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G Sbjct: 1 MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRDGAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + + LA I W GE R+ V TGGEP+LQ+D L+ AL+ GF IA+ETNG Sbjct: 61 GGKFKDAESLAAQIASLWPEGEAH-RFVVCTGGEPMLQLDQALVDALHAAGFTIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ + IDW+CVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP Sbjct: 120 SLPVLESIDWVCVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + NT LAI +C ++PKWRLS+QTHK++ I Sbjct: 180 RDFNTKLAIDWCKRHPKWRLSMQTHKYLNI 209 >gi|167568301|ref|ZP_02361175.1| hypothetical protein BoklC_00570 [Burkholderia oklahomensis C6786] Length = 210 Score = 333 bits (856), Expect = 8e-90, Method: Composition-based stats. Identities = 118/210 (56%), Positives = 148/210 (70%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G Sbjct: 1 MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRDGAVCRFCDTDFVGADGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + + LA I W GE R+ V TGGEP+LQ+D L+ AL+ GF IA+ETNG Sbjct: 61 GGKFKDAESLAAQIASLWPEGEAH-RFVVCTGGEPMLQLDQALVDALHAAGFTIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ + IDW+CVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP Sbjct: 120 SLPVLESIDWVCVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + NT LAI +C ++PKWRLS+QTHK++ I Sbjct: 180 RDFNTKLAIDWCKRHPKWRLSMQTHKYLNI 209 >gi|148261740|ref|YP_001235867.1| organic radical activating-like protein [Acidiphilium cryptum JF-5] gi|146403421|gb|ABQ31948.1| Organic radical activating enzymes-like protein [Acidiphilium cryptum JF-5] Length = 211 Score = 333 bits (855), Expect = 9e-90, Method: Composition-based stats. Identities = 130/208 (62%), Positives = 153/208 (73%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG G GG Sbjct: 3 YSVKEIFPTLQGEGRNAGRAAVFCRFAGCNLWSGREEDRASATCRFCDTDFVGTDGPGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ + LA I+ W V TGGEPLLQ+D PLI+A++ GFEIAVETNGTI Sbjct: 63 RFADAAGLARAIQAAWSAACTRDALVVFTGGEPLLQLDAPLIEAVHDAGFEIAVETNGTI 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 EPP GIDW+CVSPK G +L ++ G ELKLV+PQ +PE + G DF F LQPMDGP Sbjct: 123 EPPPGIDWLCVSPKEGAELVVRQGSELKLVYPQKEATPERFAGLDFAHFLLQPMDGPDRA 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT AI YC +P+WRLS+QTHK++GI Sbjct: 183 ANTRAAIEYCLTHPQWRLSMQTHKYLGI 210 >gi|17546168|ref|NP_519570.1| hypothetical protein RSc1449 [Ralstonia solanacearum GMI1000] gi|17428464|emb|CAD15151.1| probable organic radical activating enzyme protein [Ralstonia solanacearum GMI1000] Length = 212 Score = 333 bits (854), Expect = 1e-89, Method: Composition-based stats. Identities = 125/212 (58%), Positives = 147/212 (69%), Gaps = 2/212 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT Sbjct: 1 MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRAAAICQFCDTDFVGTDGTL 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GG+Y D LAD + QW GR V TGGEPLLQ+D PLI AL+ RGFEIA+ETN Sbjct: 61 GGKYPTADALADTVAAQWPAAATGGRPLVVCTGGEPLLQLDRPLIDALHARGFEIAIETN 120 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GT+ P GIDW+CVSPK G +L + G ELK+V PQ + Y DF F LQPMDGP Sbjct: 121 GTLAVPDGIDWVCVSPKMGAELVVTRGDELKVVIPQPGQDLDAYERLDFRHFFLQPMDGP 180 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT LA+ C + P+W LS+QTHK +GIR Sbjct: 181 LARRNTALAVELCQRRPRWHLSLQTHKMLGIR 212 >gi|325518103|gb|EGC97893.1| organic radical activating enzyme-like protein [Burkholderia sp. TJI49] Length = 210 Score = 333 bits (854), Expect = 1e-89, Method: Composition-based stats. Identities = 120/210 (57%), Positives = 149/210 (70%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + D L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG Sbjct: 61 GGKFKDADALVATIAGLWPDGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|221214677|ref|ZP_03587647.1| conserved hypothetical protein [Burkholderia multivorans CGD1] gi|221165567|gb|EED98043.1| conserved hypothetical protein [Burkholderia multivorans CGD1] Length = 210 Score = 333 bits (854), Expect = 1e-89, Method: Composition-based stats. Identities = 120/210 (57%), Positives = 149/210 (70%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAQAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + D L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG Sbjct: 61 GGKFKDADALVATIAGLWPDGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|194289720|ref|YP_002005627.1| hypothetical protein RALTA_A1615 [Cupriavidus taiwanensis LMG 19424] gi|193223555|emb|CAQ69560.1| conserved hypothetical protein, NrdG domain (Organic radical activating enzymes) [Cupriavidus taiwanensis LMG 19424] Length = 211 Score = 332 bits (853), Expect = 2e-89, Method: Composition-based stats. Identities = 122/211 (57%), Positives = 151/211 (71%), Gaps = 1/211 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR SA C+FCDTDFVG GT+ Sbjct: 1 MTYAVKEIFYTLQGEGANAGRAAVFCRFAGCNLWSGREEDRASAVCQFCDTDFVGTDGTR 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG+Y +LA ++ +W G V TGGEPLLQ+D PLI+AL+ GFEIA+ETNG Sbjct: 61 GGKYRTAAELAAVVASEWPQGAGGKPLVVCTGGEPLLQLDAPLIEALHAHGFEIAIETNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 TI P GIDW+CVSPK G +L + G ELK+V PQ Y DF F +Q MDGP Sbjct: 121 TIAVPPGIDWVCVSPKMGSELVVTRGDELKVVIPQDGQDFAAYEKLDFRHFLVQAMDGPL 180 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 ENT A+++C ++P+WRLS+QTHK +GIR Sbjct: 181 ARENTAAAVAFCQRHPRWRLSLQTHKLLGIR 211 >gi|323524432|ref|YP_004226585.1| Radical SAM domain-containing protein [Burkholderia sp. CCGE1001] gi|323381434|gb|ADX53525.1| Radical SAM domain protein [Burkholderia sp. CCGE1001] Length = 210 Score = 332 bits (853), Expect = 2e-89, Method: Composition-based stats. Identities = 121/210 (57%), Positives = 152/210 (72%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG+Y ++L +I QW GE + R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG Sbjct: 61 GGKYRTPEELVQMIASQWPEGEGQ-RFVVCTGGEPMLQIDAPLVDALHAAGFEIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSDYAKLDFEYFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 180 RDINTRLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|299134645|ref|ZP_07027837.1| Radical SAM domain protein [Afipia sp. 1NLS2] gi|298590455|gb|EFI50658.1| Radical SAM domain protein [Afipia sp. 1NLS2] Length = 210 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 135/209 (64%), Positives = 157/209 (75%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG AGR AVFCRF+GCNLWSGREQDR A C+FCDTDFVG GT GG Sbjct: 3 YAVKEIFLTLQGEGMQAGRPAVFCRFAGCNLWSGREQDRAEAVCQFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY D LA+ I W + R+ VLTGGEP+LQ+D LI AL+ RGF IAVETNGT+ Sbjct: 63 RYATADDLAERIAATW-GPDSRHRFVVLTGGEPMLQIDDALIAALHARGFMIAVETNGTL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P G+DWICVSPKA +L I+ G ELKLV+PQ +PE+Y F+ F LQPMDGP LE Sbjct: 122 PAPPGLDWICVSPKADTELAIRQGHELKLVYPQRQNAPEDYTALAFQHFLLQPMDGPDLE 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT AI YC ++P+WRLSVQTHK IGIR Sbjct: 182 QNTARAIDYCLRHPQWRLSVQTHKTIGIR 210 >gi|167645047|ref|YP_001682710.1| hypothetical protein Caul_1082 [Caulobacter sp. K31] gi|167347477|gb|ABZ70212.1| conserved hypothetical protein [Caulobacter sp. K31] Length = 210 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 132/210 (62%), Positives = 153/210 (72%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS+KEIFLTLQGEGG AG+ AVFCRF+GCNLW+GREQDR A C FCDTDFVG G Sbjct: 1 MTYSVKEIFLTLQGEGGQAGKAAVFCRFAGCNLWTGREQDRRKAVCAFCDTDFVGTDGEG 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ D L D +E W TG R V TGGEPLLQ+D PLI A + RGF IAVETNG Sbjct: 61 GGKFVTPDALVDAVEAAW-TGGPGDRLVVCTGGEPLLQLDAPLIAAFHARGFMIAVETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T+ P+GIDWICVSPKA + GQELKLV+PQ PE + DFERF LQPMDGP Sbjct: 120 TVAAPEGIDWICVSPKADAPVVQTRGQELKLVYPQDKALPERFAALDFERFYLQPMDGPD 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E NT LA++YC +P+WRLSVQTHK++G+ Sbjct: 180 RERNTQLAVAYCLSHPQWRLSVQTHKYLGL 209 >gi|161526284|ref|YP_001581296.1| organic radical activating enzyme-like protein [Burkholderia multivorans ATCC 17616] gi|189349002|ref|YP_001944630.1| hypothetical protein BMULJ_00116 [Burkholderia multivorans ATCC 17616] gi|160343713|gb|ABX16799.1| organic radical activating enzyme-like protein [Burkholderia multivorans ATCC 17616] gi|189333024|dbj|BAG42094.1| conserved hypothetical protein [Burkholderia multivorans ATCC 17616] Length = 210 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 119/210 (56%), Positives = 148/210 (70%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAQAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + D L I W GE R+ V TGGEP+LQ+D PL+ AL+ GF IA+ETNG Sbjct: 61 GGKFKDADALVATIAGLWPAGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFGIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|107024049|ref|YP_622376.1| organic radical activating enzymes-like [Burkholderia cenocepacia AU 1054] gi|116691136|ref|YP_836759.1| organic radical activating enzymes-like protein [Burkholderia cenocepacia HI2424] gi|170734467|ref|YP_001766414.1| organic radical activating enzyme-like protein [Burkholderia cenocepacia MC0-3] gi|105894238|gb|ABF77403.1| organic radical activating enzymes-like protein [Burkholderia cenocepacia AU 1054] gi|116649225|gb|ABK09866.1| organic radical activating enzymes-like protein [Burkholderia cenocepacia HI2424] gi|169817709|gb|ACA92292.1| organic radical activating enzyme-like protein [Burkholderia cenocepacia MC0-3] Length = 210 Score = 331 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 119/210 (56%), Positives = 148/210 (70%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG Sbjct: 61 GGKFKDAAALVATIAGLWPEGEA-NRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEYFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|78067938|ref|YP_370707.1| organic radical activating-like protein [Burkholderia sp. 383] gi|77968683|gb|ABB10063.1| Organic radical activating enzymes-like protein [Burkholderia sp. 383] Length = 210 Score = 331 bits (851), Expect = 3e-89, Method: Composition-based stats. Identities = 118/210 (56%), Positives = 149/210 (70%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + + L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG Sbjct: 61 GGKFKDAEALVATIAGLWPEGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE + +QPMDGP Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYYLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|206558876|ref|YP_002229636.1| hypothetical protein BCAL0474 [Burkholderia cenocepacia J2315] gi|198034913|emb|CAR50785.1| conserved hypothetical protein [Burkholderia cenocepacia J2315] Length = 210 Score = 331 bits (851), Expect = 3e-89, Method: Composition-based stats. Identities = 119/210 (56%), Positives = 148/210 (70%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG Sbjct: 61 GGKFKDAAALVATIAGLWPEGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEYFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|115353224|ref|YP_775063.1| organic radical activating enzyme-like protein [Burkholderia ambifaria AMMD] gi|170703437|ref|ZP_02894209.1| organic radical activating enzyme-like protein [Burkholderia ambifaria IOP40-10] gi|171319449|ref|ZP_02908554.1| organic radical activating enzyme-like protein [Burkholderia ambifaria MEX-5] gi|172062096|ref|YP_001809748.1| organic radical activating enzyme-like protein [Burkholderia ambifaria MC40-6] gi|115283212|gb|ABI88729.1| organic radical activating enzyme-like protein [Burkholderia ambifaria AMMD] gi|170131652|gb|EDT00208.1| organic radical activating enzyme-like protein [Burkholderia ambifaria IOP40-10] gi|171095341|gb|EDT40322.1| organic radical activating enzyme-like protein [Burkholderia ambifaria MEX-5] gi|171994613|gb|ACB65532.1| organic radical activating enzyme-like protein [Burkholderia ambifaria MC40-6] Length = 210 Score = 331 bits (851), Expect = 3e-89, Method: Composition-based stats. Identities = 119/210 (56%), Positives = 149/210 (70%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + + L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG Sbjct: 61 GGKFKDAEALVATIAGLWPDGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|115522971|ref|YP_779882.1| hypothetical protein RPE_0946 [Rhodopseudomonas palustris BisA53] gi|115516918|gb|ABJ04902.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 210 Score = 331 bits (850), Expect = 4e-89, Method: Composition-based stats. Identities = 136/209 (65%), Positives = 156/209 (74%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT GG Sbjct: 3 YAVKEIFLTLQGEGAHAGRAAVFCRFTGCNLWSGREDDRAAATCQFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY + LA+ I QW G+ RY VLTGGEPLLQVD LI+AL+ RGF I VETNGT Sbjct: 63 RYLSASDLAEAIAAQWR-GDAASRYVVLTGGEPLLQVDDALIEALHDRGFSIGVETNGTQ 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 PP+ IDW+CVSPKAG +L ++ G ELKLV+PQ PE + FERFSLQPMDGP Sbjct: 122 MPPEDIDWVCVSPKAGTELTLRYGDELKLVYPQEGAEPELFEALAFERFSLQPMDGPDAA 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 N AI YC +P+WRLSVQTHK +GIR Sbjct: 182 ANIQAAIDYCLSHPQWRLSVQTHKTLGIR 210 >gi|113867905|ref|YP_726394.1| organic radical activating enzyme [Ralstonia eutropha H16] gi|113526681|emb|CAJ93026.1| organic radical activating enzyme [Ralstonia eutropha H16] Length = 211 Score = 331 bits (849), Expect = 4e-89, Method: Composition-based stats. Identities = 122/211 (57%), Positives = 152/211 (72%), Gaps = 1/211 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR SA C+FCDTDFVG GT+ Sbjct: 1 MTYAVKEIFYTLQGEGANAGRAAVFCRFAGCNLWSGREEDRASAVCQFCDTDFVGTDGTR 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG+Y ++LA ++ +W G V TGGEPLLQ+D PLI AL+ +GFEIA+ETNG Sbjct: 61 GGKYRTAEELAAVVASEWPQGAGGQPLVVCTGGEPLLQLDAPLIDALHAQGFEIAIETNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 TI P GIDW+CVSPK G +L + G ELK+V PQ Y DF F +Q MDGP Sbjct: 121 TIAVPPGIDWVCVSPKMGSELVVTRGDELKVVIPQEGQDFAAYEQLDFRHFLVQAMDGPL 180 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 ENT A+++C ++P+WRLS+QTHK +GIR Sbjct: 181 ARENTAAAVAFCQRHPRWRLSLQTHKLLGIR 211 >gi|307728151|ref|YP_003905375.1| Radical SAM domain-containing protein [Burkholderia sp. CCGE1003] gi|307582686|gb|ADN56084.1| Radical SAM domain protein [Burkholderia sp. CCGE1003] Length = 210 Score = 330 bits (848), Expect = 5e-89, Method: Composition-based stats. Identities = 120/210 (57%), Positives = 153/210 (72%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG+Y + ++L +I QW GE + R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG Sbjct: 61 GGKYRSAEELVRMIASQWPQGEGQ-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ + IDWICVSPKA L + G ELK+V PQ N +Y DF+ F +QPMDGP Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSDYAKLDFQYFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 180 RDINTRLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|300691566|ref|YP_003752561.1| hypothetical protein RPSI07_1920 [Ralstonia solanacearum PSI07] gi|299078626|emb|CBJ51283.1| conserved protein of unknown function (Organic radical activating enzymes) [Ralstonia solanacearum PSI07] Length = 212 Score = 330 bits (848), Expect = 6e-89, Method: Composition-based stats. Identities = 123/212 (58%), Positives = 148/212 (69%), Gaps = 2/212 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT+ Sbjct: 1 MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAICQFCDTDFVGTDGTQ 60 Query: 62 GGRY-NVDQLADLIEEQWIT-GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GG+Y D LAD + QW V TGGEPLLQ+D PLI AL+ RGFEIA+ETN Sbjct: 61 GGKYPTADALADTVVAQWPADATGGQPLVVCTGGEPLLQLDRPLIDALHARGFEIAIETN 120 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GT+ P GIDW+CVSPK G +L + G ELK+V PQ + + Y DF F LQPMDGP Sbjct: 121 GTLAVPDGIDWVCVSPKMGAELVVTRGDELKVVIPQQDQDLDAYERLDFRHFFLQPMDGP 180 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT LA+ C + P+W LS+QTHK +GIR Sbjct: 181 LARQNTALAVDLCQRRPRWHLSLQTHKMLGIR 212 >gi|312797586|ref|YP_004030508.1| Queuosine biosynthesis protein QueE [Burkholderia rhizoxinica HKI 454] gi|312169361|emb|CBW76364.1| Queuosine biosynthesis protein QueE [Burkholderia rhizoxinica HKI 454] Length = 263 Score = 330 bits (848), Expect = 7e-89, Method: Composition-based stats. Identities = 122/212 (57%), Positives = 147/212 (69%), Gaps = 3/212 (1%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGREQDR A CRFCDTDFVG G Sbjct: 51 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREQDRADAVCRFCDTDFVGTDGEN 110 Query: 62 GGRY-NVDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 GG+Y + D L I W GE R+ V TGGEP+LQ+D LI AL++ F IAVET Sbjct: 111 GGKYRDADALVAKIASLWPPGEAAAQYRFVVCTGGEPMLQLDAALIDALHRERFVIAVET 170 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178 NGT+ GIDW+CVSPKAG + + G ELK+V PQ N Y DFE F +QPMDG Sbjct: 171 NGTLPVLPGIDWVCVSPKAGSSIVVTRGNELKVVIPQDNQPLSEYARLDFEHFLVQPMDG 230 Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P E NT LA+ +C ++P+WRLS+QTHK++ I Sbjct: 231 PSRELNTKLAVDWCKRHPQWRLSMQTHKYLNI 262 >gi|187922325|ref|YP_001893967.1| radical SAM protein [Burkholderia phytofirmans PsJN] gi|187713519|gb|ACD14743.1| Radical SAM domain protein [Burkholderia phytofirmans PsJN] Length = 210 Score = 330 bits (847), Expect = 7e-89, Method: Composition-based stats. Identities = 122/210 (58%), Positives = 149/210 (70%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 G +Y D L +I QW GE E R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG Sbjct: 61 GDKYRTADDLVKMIAAQWPEGEGE-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ + IDWICVSPKA L + G ELK+V PQ N Y DFE F +QPMDGP Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSEYAKLDFEYFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 180 RDLNTRLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|170694006|ref|ZP_02885162.1| conserved hypothetical protein [Burkholderia graminis C4D1M] gi|170141078|gb|EDT09250.1| conserved hypothetical protein [Burkholderia graminis C4D1M] Length = 210 Score = 330 bits (847), Expect = 7e-89, Method: Composition-based stats. Identities = 120/210 (57%), Positives = 150/210 (71%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRADAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG+Y L +I QW GE + R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG Sbjct: 61 GGKYRTAADLVQMIASQWPEGEGQ-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ + IDWICVSPKA L + G ELK+V PQ N +Y DF+ F +QPMDGP Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSDYAKLDFDYFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 180 RDINTRLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|186474815|ref|YP_001856285.1| radical SAM domain-containing protein [Burkholderia phymatum STM815] gi|184191274|gb|ACC69239.1| Radical SAM domain protein [Burkholderia phymatum STM815] Length = 210 Score = 330 bits (847), Expect = 7e-89, Method: Composition-based stats. Identities = 118/210 (56%), Positives = 151/210 (71%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A C+FCDTDFVG G Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRADAVCKFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ ++LA I W GE + R+ V TGGEP+LQ+D PL+ AL+ +GFEIA+ETNG Sbjct: 61 GGKFRTPEELAAKIASLWPEGEDQ-RFVVCTGGEPMLQIDQPLVDALHAQGFEIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ IDWICVSPKAG L G ELK+V PQ N +Y +F+ F +QPMDGP Sbjct: 120 SLPVLDTIDWICVSPKAGAPLVQTKGNELKVVVPQDNQRLADYAKLEFDYFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 180 RDINTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|134297293|ref|YP_001121028.1| organic radical activating enzyme-like protein [Burkholderia vietnamiensis G4] gi|134140450|gb|ABO56193.1| organic radical activating enzyme-like protein [Burkholderia vietnamiensis G4] Length = 210 Score = 330 bits (847), Expect = 8e-89, Method: Composition-based stats. Identities = 119/210 (56%), Positives = 147/210 (70%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRADAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG Sbjct: 61 GGKFKDAAALVATIAGLWPHGEAH-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP Sbjct: 120 SLPVLDTIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 180 RDINTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|330818676|ref|YP_004362381.1| hypothetical protein bgla_1g38230 [Burkholderia gladioli BSR3] gi|327371069|gb|AEA62425.1| hypothetical protein bgla_1g38230 [Burkholderia gladioli BSR3] Length = 210 Score = 330 bits (847), Expect = 8e-89, Method: Composition-based stats. Identities = 118/210 (56%), Positives = 152/210 (72%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR +A CRFCDTDFVG G Sbjct: 1 MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRETAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ +QLA ++ W GE R+ V TGGEP+LQ+D PL+ AL+ +GFEIA+ETNG Sbjct: 61 GGKFKTPEQLAAMVASLWPEGEA-NRFVVCTGGEPMLQLDQPLVDALHAQGFEIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ + IDWICVSPKA L + G ELK+V PQ N +Y DF+ F +QPMDGP Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGHELKVVVPQDNQRLADYARLDFDYFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 180 RDINTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|326405234|ref|YP_004285316.1| hypothetical protein ACMV_30870 [Acidiphilium multivorum AIU301] gi|325052096|dbj|BAJ82434.1| hypothetical protein ACMV_30870 [Acidiphilium multivorum AIU301] Length = 211 Score = 330 bits (846), Expect = 9e-89, Method: Composition-based stats. Identities = 130/208 (62%), Positives = 152/208 (73%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG G GG Sbjct: 3 YSVKEIFPTLQGEGRNAGRAAVFCRFAGCNLWSGREEDRASATCRFCDTDFVGTDGPGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ + LA I+ W V TGGEPLLQ+D PLI+A++ GFEIAVETNGTI Sbjct: 63 RFADAAGLARAIQAAWPAACTRDALVVFTGGEPLLQLDAPLIEAVHDAGFEIAVETNGTI 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 EPP GIDW+CVSPK G +L ++ G ELKLV+PQ +PE + G DF F LQPMDGP Sbjct: 123 EPPPGIDWLCVSPKEGAELVVRQGSELKLVYPQKEATPERFAGLDFAHFLLQPMDGPDRA 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT AI YC +P+WRLS QTHK++GI Sbjct: 183 ANTRAAIEYCLTHPQWRLSTQTHKYLGI 210 >gi|91781440|ref|YP_556646.1| hypothetical protein Bxe_A4406 [Burkholderia xenovorans LB400] gi|91685394|gb|ABE28594.1| Conserved hypothetical protein [Burkholderia xenovorans LB400] Length = 210 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 123/210 (58%), Positives = 150/210 (71%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG+Y + L +I QW GE E R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG Sbjct: 61 GGKYRTAEDLVRMIASQWPQGEGE-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ + IDWICVSPKA L + G ELK+V PQ N Y DFE F +QPMDGP Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSEYAKLDFEYFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 180 REINTRLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|296161371|ref|ZP_06844178.1| Radical SAM domain protein [Burkholderia sp. Ch1-1] gi|295888357|gb|EFG68168.1| Radical SAM domain protein [Burkholderia sp. Ch1-1] Length = 210 Score = 329 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 122/210 (58%), Positives = 150/210 (71%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG+Y + L +I QW GE E R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG Sbjct: 61 GGKYRTAEDLVRMIASQWPQGEGE-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ + IDWICVSPKA L + G ELK+V PQ N Y DFE F +QPMDGP Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSEYAKLDFEYFLVQPMDGPS 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 180 RDINTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|209886114|ref|YP_002289971.1| radical SAM [Oligotropha carboxidovorans OM5] gi|209874310|gb|ACI94106.1| radical SAM [Oligotropha carboxidovorans OM5] Length = 210 Score = 329 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 139/209 (66%), Positives = 158/209 (75%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR AVFCRF+GCNLW+GREQDR A CRFCDTDFVG GT GG Sbjct: 3 YAVKEIFLTLQGEGAHAGRTAVFCRFAGCNLWTGREQDRADATCRFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY D LAD I W G R+ VLTGGEPLLQ+DV LI+AL+ R F IAVETNGT+ Sbjct: 63 RYATADALADQIAATWGEGT-THRFVVLTGGEPLLQIDVELIEALHARHFMIAVETNGTL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P G+DWICVSPKA +L I+ G ELKLV+PQ +PE+Y F FSLQPMDGP L Sbjct: 122 PAPPGLDWICVSPKADTELAIRQGHELKLVYPQAENTPEDYAALAFAHFSLQPMDGPDLA 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT AI YC ++P+WRLSVQTHK IGIR Sbjct: 182 QNTERAIDYCLRHPQWRLSVQTHKTIGIR 210 >gi|73541537|ref|YP_296057.1| hypothetical protein Reut_A1848 [Ralstonia eutropha JMP134] gi|72118950|gb|AAZ61213.1| conserved hypothetical protein [Ralstonia eutropha JMP134] Length = 211 Score = 329 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 122/211 (57%), Positives = 155/211 (73%), Gaps = 1/211 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR +A C+FCDTDFVG GT+ Sbjct: 1 MTYAVKEIFYTLQGEGANAGRAAVFCRFAGCNLWSGREEDRATAVCQFCDTDFVGTDGTR 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG+Y ++LA + +W G V TGGEPLLQ+D PLI AL+ +GFEIA+ETNG Sbjct: 61 GGKYRTAEELAGAVASEWPQGAGGKPLVVCTGGEPLLQLDAPLIDALHAQGFEIAIETNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 TI+ P GIDW+CVSPK G +L ++ G ELK+V PQV Y DF+ F +Q MDGP Sbjct: 121 TIKVPPGIDWVCVSPKMGSELVVRKGDELKVVIPQVGQDFAAYEQLDFQYFLVQAMDGPL 180 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 ENT A+++C ++P+WRLS+QTHK +GIR Sbjct: 181 ARENTAAAVAFCQRHPRWRLSLQTHKLLGIR 211 >gi|302383449|ref|YP_003819272.1| hypothetical protein Bresu_2339 [Brevundimonas subvibrioides ATCC 15264] gi|302194077|gb|ADL01649.1| conserved hypothetical protein [Brevundimonas subvibrioides ATCC 15264] Length = 211 Score = 329 bits (844), Expect = 2e-88, Method: Composition-based stats. Identities = 128/211 (60%), Positives = 152/211 (72%), Gaps = 1/211 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS+KE FLT+QGEGG AGR AVF RF+GCNLWSGREQDR A C FCDT+FVG G Sbjct: 1 MTYSVKETFLTVQGEGGQAGRPAVFLRFAGCNLWSGREQDRAKAVCSFCDTEFVGTDGDG 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + L+D + WI + + + V TGGEPLLQ+D PLI+AL+ RGF+IAVETNG Sbjct: 61 GGKFADAGVLSDHVASMWIGRDGDPKLVVCTGGEPLLQLDAPLIEALHARGFDIAVETNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T+ P GIDW+CVSPKA + GQELKLVFPQ P + DFERF LQPMDGP Sbjct: 121 TLAAPTGIDWVCVSPKAAAPVVQTSGQELKLVFPQALAMPHRFEALDFERFWLQPMDGPD 180 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT A+ YC +NPKWRLSVQTHK+IG+R Sbjct: 181 QAANTAAALDYCLKNPKWRLSVQTHKYIGVR 211 >gi|299067500|emb|CBJ38699.1| conserved protein of unknown function (Organic radical activating enzymes) [Ralstonia solanacearum CMR15] Length = 212 Score = 328 bits (842), Expect = 3e-88, Method: Composition-based stats. Identities = 124/212 (58%), Positives = 147/212 (69%), Gaps = 2/212 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT Sbjct: 1 MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAICQFCDTDFVGTDGTL 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GG+Y D LAD + QW GR V TGGEPLLQ+D LI AL+ RGFEIA+ETN Sbjct: 61 GGKYPTADALADTVAAQWPVAATGGRPLVVCTGGEPLLQLDRLLIDALHARGFEIAIETN 120 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GT+ P GIDW+CVSPK G +L + G ELK+V PQ + Y DF F LQPMDGP Sbjct: 121 GTLAVPDGIDWVCVSPKLGAELVVTRGDELKVVIPQPGQDLDAYERLDFRHFFLQPMDGP 180 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT LA+ C + P+W LS+QTHK +GIR Sbjct: 181 LARQNTALAVELCQRRPRWHLSLQTHKMLGIR 212 >gi|197106204|ref|YP_002131581.1| hypothetical protein PHZ_c2743 [Phenylobacterium zucineum HLK1] gi|196479624|gb|ACG79152.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 241 Score = 328 bits (842), Expect = 3e-88, Method: Composition-based stats. Identities = 130/207 (62%), Positives = 147/207 (71%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEGG AGR AVFCRF+GCNLWSGRE+DR A C FCDTDFVG+ G GG Sbjct: 34 YAVKEIFLTLQGEGGQAGRPAVFCRFAGCNLWSGREEDREKAVCTFCDTDFVGMDGPGGG 93 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R+ E G R VLTGGEPLLQVD LI+AL+ RGF IA+ETNGT+ Sbjct: 94 RFADAAALAAAIEAQWAGGPNDRLVVLTGGEPLLQVDEALIEALHARGFSIALETNGTLP 153 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 P GIDWICVSPKA + GQELKLVFPQ PE + DFERF LQPMDGP Sbjct: 154 VPPGIDWICVSPKADAPVVQTRGQELKLVFPQEKALPERFEHLDFERFLLQPMDGPDRAA 213 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT AI+YC +P+WRLSVQTHK++GI Sbjct: 214 NTRAAIAYCLAHPRWRLSVQTHKYLGI 240 >gi|94310513|ref|YP_583723.1| hypothetical protein Rmet_1571 [Cupriavidus metallidurans CH34] gi|93354365|gb|ABF08454.1| organic radical activating enzyme [Cupriavidus metallidurans CH34] Length = 211 Score = 328 bits (841), Expect = 4e-88, Method: Composition-based stats. Identities = 124/211 (58%), Positives = 153/211 (72%), Gaps = 1/211 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRFSGCNLW+GRE+DR A C+FCDTDFVG GT Sbjct: 1 MTYAVKEIFYTLQGEGANAGRAAVFCRFSGCNLWTGREEDRARAVCQFCDTDFVGTDGTL 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG+Y D+LA ++ +W G V TGGEPLLQ+D PLI AL+ RGFEIA+ETNG Sbjct: 61 GGKYKTADELAAVVAAEWPQGAGGKPLVVCTGGEPLLQLDAPLIGALHARGFEIAIETNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 TIE P+GIDW+CVSPK G +L +K G ELK+V PQ Y DF+ F +Q MDGP Sbjct: 121 TIEVPEGIDWVCVSPKMGSELVVKKGDELKVVIPQDGQDFAAYEQLDFQYFMVQAMDGPL 180 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT A+ +C ++P+WRLS+QTHK +GIR Sbjct: 181 ARQNTAAAVEFCQRHPRWRLSLQTHKLLGIR 211 >gi|293605772|ref|ZP_06688146.1| GntS protein [Achromobacter piechaudii ATCC 43553] gi|292815821|gb|EFF74928.1| GntS protein [Achromobacter piechaudii ATCC 43553] Length = 210 Score = 327 bits (839), Expect = 7e-88, Method: Composition-based stats. Identities = 126/210 (60%), Positives = 150/210 (71%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y+ KEIF TLQGEG HAGR AVFCRF+GCNLW+GRE DR SA C FCDTDF+G G Sbjct: 1 MTYTAKEIFKTLQGEGAHAGRAAVFCRFAGCNLWTGRESDRASAACTFCDTDFIGTDGEG 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ D LAD I W + + RY V TGGEPLLQ+D PL+ A++ RGF +A+ETNG Sbjct: 61 GGKFATPDLLADTIAATW-GPDTQDRYVVFTGGEPLLQLDAPLLTAIHARGFTVAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T++ P GIDWICVSPK + I G ELKLV+PQ N PE + DFE F LQPMDGP Sbjct: 120 TVKAPAGIDWICVSPKGTAPIVIDRGDELKLVYPQHNALPETFAHLDFEHFFLQPMDGPA 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A+ YC Q+P+WRLS+QTHK+IGI Sbjct: 180 RVANTEQAVQYCMQHPQWRLSLQTHKYIGI 209 >gi|187928417|ref|YP_001898904.1| hypothetical protein Rpic_1329 [Ralstonia pickettii 12J] gi|187725307|gb|ACD26472.1| conserved hypothetical protein [Ralstonia pickettii 12J] Length = 212 Score = 327 bits (839), Expect = 7e-88, Method: Composition-based stats. Identities = 120/212 (56%), Positives = 148/212 (69%), Gaps = 2/212 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT+ Sbjct: 1 MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAVCQFCDTDFVGTDGTQ 60 Query: 62 GGRYN-VDQLADLIEEQWIT-GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GG+Y + LAD + +W + TGGEPLLQ+D PLI AL+ RGFEIA+ETN Sbjct: 61 GGKYTTAEALADTVAAEWPASATGGKPLVICTGGEPLLQLDKPLIDALHARGFEIAIETN 120 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GTI P+GIDW+CVSPK G +L + G ELK+V PQ + Y DF+ F LQ MDGP Sbjct: 121 GTIAVPEGIDWVCVSPKMGSELVVTRGDELKVVIPQDGQDLDAYERLDFQHFFLQAMDGP 180 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT A+ C + P+WRLS+QTHK +GIR Sbjct: 181 LARQNTAAAVELCQRRPRWRLSLQTHKMLGIR 212 >gi|16127389|ref|NP_421953.1| hypothetical protein CC_3159 [Caulobacter crescentus CB15] gi|221236197|ref|YP_002518634.1| queuosine biosynthesis protein QueE [Caulobacter crescentus NA1000] gi|13424829|gb|AAK25121.1| conserved hypothetical protein [Caulobacter crescentus CB15] gi|220965370|gb|ACL96726.1| queuosine biosynthesis protein QueE [Caulobacter crescentus NA1000] Length = 210 Score = 326 bits (838), Expect = 9e-88, Method: Composition-based stats. Identities = 132/210 (62%), Positives = 153/210 (72%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS+KEIFLTLQGEGG AG+ AVFCRFSGCNLWSGREQDR A C FCDTDFVG G Sbjct: 1 MTYSVKEIFLTLQGEGGQAGKAAVFCRFSGCNLWSGREQDRAKAVCTFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + LA +E QW TG + R V TGGEP LQ+D I AL+ RGF+IAVETNG Sbjct: 61 GGKFATAEDLAAAVEAQW-TGGPDDRLVVCTGGEPFLQLDDAAIAALHARGFQIAVETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 TI P G+DWICVSPKA + GQELKLVFPQ PE + DFERF LQPMDGP Sbjct: 120 TITAPAGVDWICVSPKADAPVVQTSGQELKLVFPQEKAMPERFAALDFERFYLQPMDGPD 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + NT LA++YC +P+WRLSVQTHK++G+ Sbjct: 180 RDANTQLAVAYCLSHPQWRLSVQTHKYLGL 209 >gi|241662994|ref|YP_002981354.1| hypothetical protein Rpic12D_1394 [Ralstonia pickettii 12D] gi|309782087|ref|ZP_07676817.1| GntS [Ralstonia sp. 5_7_47FAA] gi|240865021|gb|ACS62682.1| conserved hypothetical protein [Ralstonia pickettii 12D] gi|308919153|gb|EFP64820.1| GntS [Ralstonia sp. 5_7_47FAA] Length = 212 Score = 326 bits (838), Expect = 9e-88, Method: Composition-based stats. Identities = 121/212 (57%), Positives = 148/212 (69%), Gaps = 2/212 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT+ Sbjct: 1 MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAVCQFCDTDFVGTDGTQ 60 Query: 62 GGRYN-VDQLADLIEEQWIT-GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GG+Y D LAD + +W + TGGEPLLQ+D PLI AL+ RGFEIA+ETN Sbjct: 61 GGKYTTADALADTVAAEWPASATGGKPLVICTGGEPLLQLDKPLIDALHARGFEIAIETN 120 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GTI P+GIDW+CVSPK G +L + G ELK+V PQ + Y DF+ F LQ MDGP Sbjct: 121 GTITVPEGIDWVCVSPKMGSELVVTRGDELKVVIPQDGQDLDAYERLDFQHFFLQAMDGP 180 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT A+ C + P+WRLS+QTHK +GIR Sbjct: 181 LARQNTAAAVELCQRRPRWRLSLQTHKMLGIR 212 >gi|300704193|ref|YP_003745795.1| hypothetical protein RCFBP_11899 [Ralstonia solanacearum CFBP2957] gi|299071856|emb|CBJ43184.1| conserved protein of unknown function (Organic radical activating enzymes) [Ralstonia solanacearum CFBP2957] Length = 212 Score = 326 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 125/212 (58%), Positives = 148/212 (69%), Gaps = 2/212 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT Sbjct: 1 MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRAAAVCQFCDTDFVGTDGTL 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GG+Y D LAD + QW GR V TGGEPLLQ+D LI AL+ RGFEIAVETN Sbjct: 61 GGKYPTADALADTVAAQWPADATGGRPLVVCTGGEPLLQLDRCLIDALHARGFEIAVETN 120 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GT+ P+GIDW+CVSPK G +L + G ELK+V PQ + Y DF F LQPMDGP Sbjct: 121 GTVAVPEGIDWVCVSPKMGAELVVTRGDELKVVIPQSGQDLDAYERLDFRHFFLQPMDGP 180 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT LA+ C + P+W LS+QTHK +GIR Sbjct: 181 LARQNTALAVELCQRRPRWHLSLQTHKMLGIR 212 >gi|254418815|ref|ZP_05032539.1| hypothetical protein BBAL3_1125 [Brevundimonas sp. BAL3] gi|196184992|gb|EDX79968.1| hypothetical protein BBAL3_1125 [Brevundimonas sp. BAL3] Length = 211 Score = 325 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 130/211 (61%), Positives = 150/211 (71%), Gaps = 1/211 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS KE+FLT+QGEGG AGR AVF RF+GCNLWSGREQDR SA C FCDTDFVG G Sbjct: 1 MTYSAKEVFLTVQGEGGQAGRPAVFLRFAGCNLWSGREQDRASAVCSFCDTDFVGTDGDG 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ D LAD + W + + V TGGEPLLQ+D PLI AL+ R FEIA+E+NG Sbjct: 61 GGKFATADLLADHVAAMWRGRAGDPKLVVCTGGEPLLQLDPPLIAALHARDFEIAIESNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T+ P GIDWICVSPKA DL GQELKLV+PQ P+ + FERF LQPMDGP Sbjct: 121 TLAAPDGIDWICVSPKADADLIQVKGQELKLVYPQAKALPDRFEHLAFERFWLQPMDGPD 180 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 ENT AI YC +P+WRLSVQTHK+IG+R Sbjct: 181 QAENTAAAIEYCLTHPQWRLSVQTHKYIGVR 211 >gi|300311525|ref|YP_003775617.1| organic radical activating enzyme protein [Herbaspirillum seropedicae SmR1] gi|300074310|gb|ADJ63709.1| organic radical activating enzyme protein [Herbaspirillum seropedicae SmR1] Length = 229 Score = 325 bits (833), Expect = 3e-87, Method: Composition-based stats. Identities = 122/209 (58%), Positives = 148/209 (70%), Gaps = 1/209 (0%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 YSIKEIF TLQGEG HAGR AVFCRFSGCNLW+GRE+DR+ A C+FCDTDFVG G G Sbjct: 20 TYSIKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGREEDRVRAICQFCDTDFVGTDGENG 79 Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 G++ + +LA I+ W +Y V TGGEPLLQ+D LI+A++ GFEIA+ETNGT Sbjct: 80 GKFKSPAELAAKIDSLWPARYAPSKYVVFTGGEPLLQLDAALIEAMHAVGFEIAIETNGT 139 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 I+ P G+DWICVSPK G +LK++ G ELK+V PQ + Y DF+ F LQPMDG Sbjct: 140 IDVPDGVDWICVSPKMGSELKVRRGSELKVVVPQPGQPLDEYEKLDFQHFLLQPMDGLQA 199 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT LAI NPKW+LS+QTHK + I Sbjct: 200 AANTRLAIEMVKNNPKWKLSIQTHKLLNI 228 >gi|89901390|ref|YP_523861.1| organic radical activating-like protein [Rhodoferax ferrireducens T118] gi|89346127|gb|ABD70330.1| Organic radical activating enzymes-like [Rhodoferax ferrireducens T118] Length = 211 Score = 325 bits (833), Expect = 3e-87, Method: Composition-based stats. Identities = 110/210 (52%), Positives = 145/210 (69%), Gaps = 1/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS+KEIF TLQGEG HAGR AVFCRF+GCNLWSG E R SA C+FCDTDFVG G Sbjct: 1 MTYSVKEIFYTLQGEGHHAGRPAVFCRFAGCNLWSGAEDSRASAVCQFCDTDFVGTDGEG 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + + LA I + W +Y V TGGEPLLQ++ LI A++ GFE+A+ETNG Sbjct: 61 GGKFRDAETLAAAINQLWPASYPASKYVVFTGGEPLLQLNAALIDAMHDAGFEVAIETNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T+ P+G+DW+CVSPK G L ++ G E+K+V PQ ++Y F+ + +Q MDGP Sbjct: 121 TLPVPEGVDWVCVSPKMGSALVVRAGNEIKVVIPQAGQVLDDYACLAFDHYFVQAMDGPL 180 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +EN +AI YC +P+W+LS+QTHK + I Sbjct: 181 QKENLRMAIDYCKAHPQWKLSLQTHKLLQI 210 >gi|193222302|emb|CAL61551.2| Conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 211 Score = 324 bits (831), Expect = 6e-87, Method: Composition-based stats. Identities = 123/210 (58%), Positives = 149/210 (70%), Gaps = 1/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YSIKEIF TLQGEG HAGR AVFCRFSGCNLW+GRE DR +A C+FCDTDFVG G Sbjct: 1 MTYSIKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGRESDRATAVCQFCDTDFVGTDGEG 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + +LA+ I W +Y V TGGEPLLQ+D LI A++ GFEIA+ETNG Sbjct: 61 GGKFADAVKLANTINALWPASYAASKYVVFTGGEPLLQLDTELINAMHAVGFEIAIETNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T+ P G+DWICVSPK G L ++ G ELK+V PQ+ S Y DF+ F +QPMDGP Sbjct: 121 TLPVPAGVDWICVSPKMGSQLVVRKGSELKVVIPQLAQSLAAYEDLDFQHFFVQPMDGPL 180 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E+NT LAI C +NPKW+LS+QTHK + I Sbjct: 181 AEQNTRLAIEICKKNPKWKLSLQTHKLLQI 210 >gi|134094603|ref|YP_001099678.1| hypothetical protein HEAR1379 [Herminiimonas arsenicoxydans] Length = 248 Score = 324 bits (831), Expect = 6e-87, Method: Composition-based stats. Identities = 123/209 (58%), Positives = 149/209 (71%), Gaps = 1/209 (0%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 YSIKEIF TLQGEG HAGR AVFCRFSGCNLW+GRE DR +A C+FCDTDFVG G G Sbjct: 39 TYSIKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGRESDRATAVCQFCDTDFVGTDGEGG 98 Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 G++ + +LA+ I W +Y V TGGEPLLQ+D LI A++ GFEIA+ETNGT Sbjct: 99 GKFADAVKLANTINALWPASYAASKYVVFTGGEPLLQLDTELINAMHAVGFEIAIETNGT 158 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + P G+DWICVSPK G L ++ G ELK+V PQ+ S Y DF+ F +QPMDGP Sbjct: 159 LPVPAGVDWICVSPKMGSQLVVRKGSELKVVIPQLAQSLAAYEDLDFQHFFVQPMDGPLA 218 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E+NT LAI C +NPKW+LS+QTHK + I Sbjct: 219 EQNTRLAIEICKKNPKWKLSLQTHKLLQI 247 >gi|317404069|gb|EFV84524.1| hypothetical protein HMPREF0005_04153 [Achromobacter xylosoxidans C54] Length = 210 Score = 323 bits (830), Expect = 8e-87, Method: Composition-based stats. Identities = 119/209 (56%), Positives = 145/209 (69%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y+ KEIF TLQGEG HAGR AVFCRF+GCNLW+GRE DR SA C FCDTDF+G G Sbjct: 1 MTYTAKEIFKTLQGEGAHAGRAAVFCRFAGCNLWTGRESDRASAACTFCDTDFIGTDGDG 60 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 GG++ +L E + RY V TGGEPLLQ+D L+ ++ RGF +A+ETNGT Sbjct: 61 GGKFASPELLADAIEAAWGPDTANRYIVFTGGEPLLQLDEALLAVVHARGFTVAIETNGT 120 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 ++PP GIDWICVSPK + I+ G ELKLV+PQ N P + DF+ F LQPMDGP Sbjct: 121 VQPPPGIDWICVSPKGTAPVVIERGNELKLVYPQANALPPRFEHLDFDHFFLQPMDGPAR 180 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A+ YC Q+P+WRLS+QTHK+IGI Sbjct: 181 LANTEQAVQYCMQHPQWRLSLQTHKYIGI 209 >gi|295688231|ref|YP_003591924.1| radical SAM domain-containing protein [Caulobacter segnis ATCC 21756] gi|295430134|gb|ADG09306.1| Radical SAM domain protein [Caulobacter segnis ATCC 21756] Length = 210 Score = 323 bits (830), Expect = 8e-87, Method: Composition-based stats. Identities = 131/210 (62%), Positives = 153/210 (72%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS+KEIFLTLQGEGG AG+ AVFCRFSGCNLWSGREQDR A C FCDTDFVG G Sbjct: 1 MTYSVKEIFLTLQGEGGQAGKAAVFCRFSGCNLWSGREQDRAKAVCTFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ D LA +E QW TG + R V TGGEP LQ+D I AL+ RGF+IAVE+NG Sbjct: 61 GGKFATADDLAAAVEAQW-TGGPDDRLVVCTGGEPFLQLDEAAIAALHARGFQIAVESNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 TI+ P IDWIC+SPKA + GQELKLVFPQ PE + DFERF LQPMDGP Sbjct: 120 TIQAPPEIDWICISPKADAPVVQTSGQELKLVFPQEKAMPERFADLDFERFYLQPMDGPD 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + NT LA++YC +P+WRLSVQTHK++G+ Sbjct: 180 RDRNTQLAVAYCLSHPQWRLSVQTHKYLGL 209 >gi|284028807|ref|YP_003378738.1| hypothetical protein Kfla_0827 [Kribbella flavida DSM 17836] gi|283808100|gb|ADB29939.1| conserved hypothetical protein [Kribbella flavida DSM 17836] Length = 211 Score = 323 bits (830), Expect = 8e-87, Method: Composition-based stats. Identities = 116/208 (55%), Positives = 149/208 (71%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y +KEIF TLQGEG HAGR AVFCRF+ CNLW+GRE+DR A C FCDTDFVG G GG Sbjct: 3 YKVKEIFYTLQGEGSHAGRPAVFCRFASCNLWTGREKDRARAICSFCDTDFVGTDGPGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + + LA +E+ W + R V TGGEPLLQ+D + AL++RGF +AVETNGT Sbjct: 63 KFASAEDLARAVEDAWPHDGHDQRMVVCTGGEPLLQLDADAVSALHERGFYVAVETNGTQ 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 PPQG+DW+CVSPK G +L + G ELKLV+PQ P + +FE F LQPMD P + Sbjct: 123 IPPQGLDWLCVSPKIGAELIVTSGDELKLVYPQAGGDPAQFEHLEFEHFRLQPMDSPDRQ 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +NT A+ YC ++P+W+LS+QTHK++GI Sbjct: 183 QNTAAAVEYCLKHPRWQLSLQTHKYLGI 210 >gi|302558410|ref|ZP_07310752.1| GntS family protein [Streptomyces griseoflavus Tu4000] gi|302476028|gb|EFL39121.1| GntS family protein [Streptomyces griseoflavus Tu4000] Length = 213 Score = 323 bits (829), Expect = 1e-86, Method: Composition-based stats. Identities = 121/213 (56%), Positives = 149/213 (69%), Gaps = 2/213 (0%) Query: 1 MKL-YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + Y IKEIF TLQGEG HAGR AVFCRFS CNLW+GRE DR A C+FCDTDFVG G Sbjct: 1 MNMTYLIKEIFYTLQGEGSHAGRPAVFCRFSRCNLWTGREADRSRAICQFCDTDFVGTDG 60 Query: 60 TKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 GGR+ + LAD +E W + ++ R+ V TGGEPLLQ+D I AL+ RGFE+AVET Sbjct: 61 EGGGRFRTAEDLADAVEAAWPSTDRAHRFVVCTGGEPLLQLDEDAIAALHARGFEVAVET 120 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178 NGT P GIDW+CVSPK G L + G ELKLV+PQ P + G DF+ LQP+D Sbjct: 121 NGTRPAPHGIDWLCVSPKIGSQLVLTSGDELKLVYPQAGGDPAQFEGLDFQHLRLQPLDD 180 Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 E++T A+ YC +NP+W LS+QTHK++GI+ Sbjct: 181 ANREDHTRAAVEYCMKNPRWTLSLQTHKYLGIQ 213 >gi|182679140|ref|YP_001833286.1| radical SAM domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182635023|gb|ACB95797.1| Radical SAM domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 211 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 133/211 (63%), Positives = 151/211 (71%), Gaps = 2/211 (0%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y++KEIFLTLQGEG AGR AVFCRF+GCNLWSGRE DR A CRFCDTDFVG+ G Sbjct: 1 MSHYAVKEIFLTLQGEGAQAGRPAVFCRFTGCNLWSGREADRAQAICRFCDTDFVGMDGL 60 Query: 61 KGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GGR+ + LAD IE W G RY V TGGEPLLQ+D LI+ ++ RGF IAVETN Sbjct: 61 GGGRFESASSLADAIETAWTAG-PAHRYVVFTGGEPLLQLDETLIKEIHARGFTIAVETN 119 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GTI PP G+DWICVSPKAG LKI G ELKLVFPQ + PE + F+ F LQPMD Sbjct: 120 GTIAPPPGLDWICVSPKAGAPLKITQGSELKLVFPQEALDPEEFRALSFQHFWLQPMDNA 179 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 L NT A +YC +P+WRLS+QTHK IGI Sbjct: 180 NLARNTTEATAYCLAHPQWRLSLQTHKLIGI 210 >gi|91787388|ref|YP_548340.1| hypothetical protein Bpro_1494 [Polaromonas sp. JS666] gi|91696613|gb|ABE43442.1| conserved hypothetical protein [Polaromonas sp. JS666] Length = 211 Score = 322 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 127/209 (60%), Positives = 146/209 (69%), Gaps = 1/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y +KEIF TLQGEG +AGR AVFCRF+GCNLWSGREQDR +A C+FCDTDFVG GT GG Sbjct: 3 YQVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREQDRATAVCQFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + D LA LIE QW ++ R V+TGGEPLLQVDV LI AL+ RGF+IAVETNGTI Sbjct: 63 KFADADALARLIEAQWPADDRAHRLVVMTGGEPLLQVDVALIAALHARGFQIAVETNGTI 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDWICVSPKAG + GQELK+V+PQ F LQPMD Sbjct: 123 AAPAGIDWICVSPKAGAPWIQREGQELKVVWPQAGFELAELEAARFTHRFLQPMDNARRA 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT I+ C Q P WRLS+QTHK GIR Sbjct: 183 DNTQACIALCMQRPAWRLSLQTHKITGIR 211 >gi|330994295|ref|ZP_08318223.1| 7-carboxy-7-deazaguanine synthase-like protein [Gluconacetobacter sp. SXCC-1] gi|329758762|gb|EGG75278.1| 7-carboxy-7-deazaguanine synthase-like protein [Gluconacetobacter sp. SXCC-1] Length = 211 Score = 322 bits (827), Expect = 2e-86, Method: Composition-based stats. Identities = 124/208 (59%), Positives = 147/208 (70%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG HAGR AVFCRF+GCNLWSG E+DR A CRFCDTDF+G G GG Sbjct: 3 YTVKEIFPTLQGEGAHAGRTAVFCRFTGCNLWSGLERDRARATCRFCDTDFIGTDGAGGG 62 Query: 64 RYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ L AD I W +++ + V TGGEPLLQ+D LI A++ RGFEIAVETNGT+ Sbjct: 63 RFASASLLADAIAAHWPAPDRKAAFVVFTGGEPLLQLDDALITAVHARGFEIAVETNGTL 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDWICVSPKAG L G ELKLV+PQ ++ P G DF +F LQPMD + Sbjct: 123 RAPGGIDWICVSPKAGAPLVQTSGHELKLVYPQPDLLPGQVAGLDFSQFWLQPMDNAARD 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A+ YC +P+WRLS+QTHK IGI Sbjct: 183 HNTRAAVDYCLHHPQWRLSLQTHKLIGI 210 >gi|288942462|ref|YP_003444702.1| radical SAM domain-containing protein [Allochromatium vinosum DSM 180] gi|288897834|gb|ADC63670.1| radical SAM domain-containing protein [Allochromatium vinosum DSM 180] Length = 215 Score = 322 bits (827), Expect = 2e-86, Method: Composition-based stats. Identities = 127/212 (59%), Positives = 146/212 (68%), Gaps = 5/212 (2%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y +KE F TLQGEG AGR AVFCRFSGCNLWSGREQDR A CRFCDTDF G G GG Sbjct: 3 YWVKESFYTLQGEGAQAGRAAVFCRFSGCNLWSGREQDRDRAICRFCDTDFRGTDGEGGG 62 Query: 64 RY-NVDQLADLIEEQWITGE----KEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 RY + D LA+ + W TG + Y V TGGEPLLQ+D PLI AL+ GFE+AVET Sbjct: 63 RYRDADVLAEHLRALWPTGAGADASDRPYVVCTGGEPLLQLDAPLIDALHGSGFEVAVET 122 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178 NGT P G+DWICVSPKAG + G ELKL++PQ + PE + G F F LQPMDG Sbjct: 123 NGTRPAPPGLDWICVSPKAGATTVLIEGDELKLIYPQPGLEPERFEGLGFRHFFLQPMDG 182 Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P NT LA+ YC P+WRLS+QTHK++GI Sbjct: 183 PQSNANTRLAVDYCKARPRWRLSLQTHKWLGI 214 >gi|167585085|ref|ZP_02377473.1| organic radical activating enzyme-like protein [Burkholderia ubonensis Bu] Length = 210 Score = 322 bits (826), Expect = 2e-86, Method: Composition-based stats. Identities = 113/209 (54%), Positives = 143/209 (68%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAQALCRFCDTDFVGTDGEN 60 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 GG++ + R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG+ Sbjct: 61 GGKFKDAAALAAQVASLWPDGEAHRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGS 120 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + + IDWICVSPKA L + G ELK+V PQ N +Y DF+ F +QPMDGP Sbjct: 121 LPVLESIDWICVSPKADVPLVVTKGNELKVVIPQDNQRLADYAKLDFDYFLVQPMDGPSR 180 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + NT LAI +C ++P+WRLS+QTHK++ I Sbjct: 181 DLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209 >gi|158422696|ref|YP_001523988.1| hypothetical protein AZC_1072 [Azorhizobium caulinodans ORS 571] gi|158329585|dbj|BAF87070.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 212 Score = 322 bits (826), Expect = 2e-86, Method: Composition-based stats. Identities = 128/209 (61%), Positives = 150/209 (71%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG AGR AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG+ G GG Sbjct: 3 YAVKEIFKTLQGEGAQAGRAAVFCRFAGCNLWSGREEDRASAICRFCDTDFVGMDGEGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 R+ + LA I W GR Y V TGGEPLLQ+D LI+A++ GFEIA+ETNGT Sbjct: 63 RFADAPSLAATIARTWGEKGAGGRPYVVFTGGEPLLQLDAALIEAVHAEGFEIAIETNGT 122 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + P GIDWICVSPKAG ++ + G ELKLV+PQ V PE G FE + LQPMDGP Sbjct: 123 LPAPAGIDWICVSPKAGAEIVQRTGSELKLVYPQPEVPPEAVAGLTFEHYFLQPMDGPAR 182 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ENT I+YC +P+WRLS+QTHK GI Sbjct: 183 IENTQAVIAYCLAHPQWRLSLQTHKITGI 211 >gi|124265719|ref|YP_001019723.1| hypothetical protein Mpe_A0526 [Methylibium petroleiphilum PM1] gi|124258494|gb|ABM93488.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 211 Score = 322 bits (826), Expect = 2e-86, Method: Composition-based stats. Identities = 123/211 (58%), Positives = 152/211 (72%), Gaps = 1/211 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS+KE+F TLQGEG HAGR AVFCRF+GCNLWSGRE DR A CRFCDT+FVG GT Sbjct: 1 MTYSVKEVFYTLQGEGSHAGRPAVFCRFAGCNLWSGREADRADAVCRFCDTEFVGTDGTG 60 Query: 62 GGRYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + + LA + W G+ R+ VLTGGEPLLQVD PLI AL+ + FEIAVETNG Sbjct: 61 GGKFTIAESLASHVAAHWPAGDAGPRFVVLTGGEPLLQVDAPLIDALHAQRFEIAVETNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 ++ P GIDW+CVSPKAG L + GQELK+V PQ + G DF + +QPMDGP Sbjct: 121 SVPAPPGIDWLCVSPKAGAPLLQRSGQELKVVVPQGGIDLGELDGLDFAQRRVQPMDGPD 180 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 L NT+ A+ +C +P+W+LS+QTHK +GIR Sbjct: 181 LAANTDWAVRWCLAHPRWQLSLQTHKLLGIR 211 >gi|237748637|ref|ZP_04579117.1| organic radical activating enzyme [Oxalobacter formigenes OXCC13] gi|229379999|gb|EEO30090.1| organic radical activating enzyme [Oxalobacter formigenes OXCC13] Length = 219 Score = 321 bits (825), Expect = 3e-86, Method: Composition-based stats. Identities = 122/209 (58%), Positives = 146/209 (69%), Gaps = 1/209 (0%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 YS+KEIF TLQGEG +GR AVFCRFSGCNLWSGRE DR + CRFCDTDFVG G G Sbjct: 10 TYSVKEIFYTLQGEGARSGRPAVFCRFSGCNLWSGREADRSRSVCRFCDTDFVGTDGVNG 69 Query: 63 GRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 G++ + L+ IE W G E RY V TGGEPLLQ+D LI A++ +GFEIA+ETNGT Sbjct: 70 GKFAQAEDLSSFIESLWPAGFMENRYVVFTGGEPLLQLDAALIDAMHGKGFEIAIETNGT 129 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + P GIDW+CVSPKAG DL + GG ELK+V PQ +Y F F +QPMDG Sbjct: 130 LAVPDGIDWVCVSPKAGADLAVAGGDELKVVVPQPGQILADYESLAFTHFYVQPMDGENR 189 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +N +AI C QNPKW+LS+QTHK++ I Sbjct: 190 LQNVKIAIDTCLQNPKWKLSLQTHKYLQI 218 >gi|152981565|ref|YP_001353700.1| organic radical activating enzyme [Janthinobacterium sp. Marseille] gi|151281642|gb|ABR90052.1| organic radical activating enzyme [Janthinobacterium sp. Marseille] Length = 211 Score = 321 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 122/210 (58%), Positives = 146/210 (69%), Gaps = 1/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS+KEIF TLQGEG HAGR AVFCRFSGCNLW+GRE DR +A C+FCDTDFVG G Sbjct: 1 MTYSVKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGRESDRATAVCQFCDTDFVGTNGEG 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + LA I W +Y V TGGEPLLQ+D LI A++ GFEIA+ETNG Sbjct: 61 GGKFVDGSTLAHTINALWPESYAASKYVVFTGGEPLLQLDTELIDAMHAVGFEIAIETNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T+ P G+DWICVSPK G L ++ G ELK+V PQ S Y +FE F +QPMDGP Sbjct: 121 TLPVPAGVDWICVSPKMGSQLVVRKGSELKVVIPQAEQSLAAYEALEFEHFFVQPMDGPL 180 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E+NT LAI C +NPKW+LS+QTHK + I Sbjct: 181 AEQNTKLAIDVCKRNPKWKLSLQTHKLLQI 210 >gi|86742064|ref|YP_482464.1| hypothetical protein Francci3_3380 [Frankia sp. CcI3] gi|86568926|gb|ABD12735.1| conserved hypothetical protein [Frankia sp. CcI3] Length = 212 Score = 321 bits (823), Expect = 5e-86, Method: Composition-based stats. Identities = 122/210 (58%), Positives = 146/210 (69%), Gaps = 2/210 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y IKEIF TLQGEG +GR AVFCRF+ CNLW+GRE+DR A C+FCDTDFVG G GG Sbjct: 3 YRIKEIFYTLQGEGVRSGRPAVFCRFALCNLWTGRERDRHRAVCQFCDTDFVGTDGPDGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEG-RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + D LAD + +W + Y V TGGEPLLQ+D P + AL+ RGFE+AVETNGT Sbjct: 63 VFDTPDDLADAVAARWPSDAPGALPYVVCTGGEPLLQLDTPAVSALHTRGFEVAVETNGT 122 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 P G+DW+CVSPKAG L++ G ELKLVFPQ PE + G +F LQPMDGP Sbjct: 123 CPAPAGLDWVCVSPKAGAPLRLTTGDELKLVFPQPGAGPELFAGLEFGHHLLQPMDGPHR 182 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 E NT A+ YC +P+WRLS+QTHK +GIR Sbjct: 183 EANTRAALDYCLAHPRWRLSIQTHKILGIR 212 >gi|224824585|ref|ZP_03697692.1| conserved hypothetical protein [Lutiella nitroferrum 2002] gi|224603078|gb|EEG09254.1| conserved hypothetical protein [Lutiella nitroferrum 2002] Length = 209 Score = 321 bits (823), Expect = 5e-86, Method: Composition-based stats. Identities = 124/209 (59%), Positives = 146/209 (69%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y++KEIF TLQGEG AGR AVFCRF+GCNLWSG+E+ R A C+FCDTDFVG G Sbjct: 1 MYTVKEIFYTLQGEGRQAGRAAVFCRFAGCNLWSGKERHRAKAICQFCDTDFVGTGPDGG 60 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +QLA+ I W G + V TGGEPLLQ+D PLI AL+ RGFEIAVETNGT+ Sbjct: 61 KFKTAEQLAERIAGAWPAGAGGTPFVVCTGGEPLLQLDAPLIDALHARGFEIAVETNGTV 120 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDW+CVSPKAG L G ELKLV+PQ + PE+ G F+ F LQPMDGP + Sbjct: 121 AAPPGIDWLCVSPKAGAPLLQTSGHELKLVYPQPTLMPESVAGLAFQNFYLQPMDGPDVA 180 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT AI+YC P+WRLSVQTHK + IR Sbjct: 181 ANTRAAIAYCMAQPQWRLSVQTHKVLNIR 209 >gi|220926506|ref|YP_002501808.1| radical SAM domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219951113|gb|ACL61505.1| radical SAM domain-containing protein [Methylobacterium nodulans ORS 2060] Length = 210 Score = 320 bits (822), Expect = 5e-86, Method: Composition-based stats. Identities = 124/207 (59%), Positives = 149/207 (71%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG AGR AVFCRF+GCNLWSGRE DR A CRFCDTDFVG G GG Sbjct: 3 YAVKEIFHTLQGEGAQAGRAAVFCRFAGCNLWSGREADRADAICRFCDTDFVGTDGEGGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R+ + G ++GRY V TGGEPLLQ+D PL+ A++ RGF AVETNGT + Sbjct: 63 RFADAEALAAAIAAAWGGGRDGRYVVFTGGEPLLQLDAPLLAAVHARGFATAVETNGTQD 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 P+G+DWICVSPKAG L+I G ELKLV+PQ + PE+ +G DF F LQPMDGP Sbjct: 123 APEGLDWICVSPKAGAPLRITRGDELKLVYPQAGLRPEDLVGLDFRHFWLQPMDGPDRLA 182 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A++YC ++ +WRLS+QTHK IGI Sbjct: 183 NTEAAVAYCLRDARWRLSLQTHKLIGI 209 >gi|146339025|ref|YP_001204073.1| hypothetical protein BRADO1974 [Bradyrhizobium sp. ORS278] gi|146191831|emb|CAL75836.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278] Length = 210 Score = 320 bits (822), Expect = 6e-86, Method: Composition-based stats. Identities = 131/208 (62%), Positives = 152/208 (73%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF+TLQGEG AGR AVFCRF+GCNLWSGRE DR +A CRFCDTDFVG+ GT GG Sbjct: 3 YAVKEIFMTLQGEGAQAGRAAVFCRFAGCNLWSGREADRATATCRFCDTDFVGVDGTLGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 RY TG RY +LTGGEPLLQVD LI AL+ +GF + +ETNGT+ Sbjct: 63 RYETAAALAEAIAGQWTGGAADRYTILTGGEPLLQVDADLIAALHAQGFAVGIETNGTLI 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 PP GIDWICVSPKAG +LK++ G ELKLV+PQ P+ + G FERFSLQPMDGP Sbjct: 123 PPDGIDWICVSPKAGAELKLRHGHELKLVYPQAGTEPDKFEGLAFERFSLQPMDGPDAAA 182 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT AI YC + P+WRLS+QTHK IGIR Sbjct: 183 NTARAIHYCQRRPQWRLSLQTHKMIGIR 210 >gi|85813929|emb|CAF31558.1| putative fortimicin production protein [Micromonospora olivasterospora] Length = 212 Score = 320 bits (822), Expect = 6e-86, Method: Composition-based stats. Identities = 119/211 (56%), Positives = 143/211 (67%), Gaps = 3/211 (1%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y +KEIF TLQGEG HAGR AVFCRF+ CNLW+GRE++R A C+FCDTDFVG G G Sbjct: 1 MYRVKEIFYTLQGEGSHAGRPAVFCRFTSCNLWTGREEERHRAICQFCDTDFVGTDGPGG 60 Query: 63 GRYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GR+ GE R Y V TGGEPLLQ+D ++AL+ GFE+AVETN Sbjct: 61 GRFATAAELAAAVVAAWRGEDHPRSRPYVVCTGGEPLLQLDEAAVRALHDAGFEVAVETN 120 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GT P GIDW+CVSPKAG DL + G +LKLV+PQ P + G DF F LQPMDGP Sbjct: 121 GTRPAPPGIDWVCVSPKAGADLVLTRGDDLKLVYPQPGAEPARFEGLDFAHFMLQPMDGP 180 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A+ YC ++P+WRLS+QTHK+IGI Sbjct: 181 DRVANTEAAVRYCLEHPQWRLSLQTHKYIGI 211 >gi|300023287|ref|YP_003755898.1| radical SAM protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525108|gb|ADJ23577.1| Radical SAM domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 208 Score = 320 bits (821), Expect = 7e-86, Method: Composition-based stats. Identities = 121/209 (57%), Positives = 143/209 (68%), Gaps = 3/209 (1%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR A C+FCDTDFVG G G Sbjct: 1 MYAVKEIFYTLQGEGTNAGRPAVFCRFAGCNLWTGREVDRAKAVCQFCDTDFVGTDGEGG 60 Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 GR+ D LA G VLTGGEP+LQVD L+ AL+ RGF IA+ETNGT Sbjct: 61 GRFRTADDLARACRAAC--GSDGDMLVVLTGGEPMLQVDQELVDALHARGFTIAIETNGT 118 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + + IDWICVSPKAG L+ K G ELKLV+PQ V P +Y F+ LQPMDG Sbjct: 119 LPVLETIDWICVSPKAGSQLQQKHGHELKLVYPQEGVDPADYADLAFQTRFLQPMDGATR 178 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E NT A++YC NP WRLS+QTHK +GI Sbjct: 179 EANTQAAVAYCKANPGWRLSLQTHKLLGI 207 >gi|329902674|ref|ZP_08273228.1| Queuosine Biosynthesis QueE Radical SAM [Oxalobacteraceae bacterium IMCC9480] gi|327548646|gb|EGF33296.1| Queuosine Biosynthesis QueE Radical SAM [Oxalobacteraceae bacterium IMCC9480] Length = 207 Score = 320 bits (821), Expect = 9e-86, Method: Composition-based stats. Identities = 114/205 (55%), Positives = 141/205 (68%), Gaps = 1/205 (0%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY- 65 KEIF TLQGEG HAGR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG G GG++ Sbjct: 2 KEIFYTLQGEGTHAGRPAVFCRFAGCNLWSGRESDRATAVCQFCDTDFVGTDGVMGGKFA 61 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 + + LA + W ++ V+TGGEP+LQ+D+ LI AL+ +GF IA+ETNGT+ P Sbjct: 62 DAESLAATVNSLWPADYPASKFIVITGGEPMLQLDLALIDALHAQGFMIAIETNGTLPVP 121 Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185 +DWICVSPK G L + G ELK+V PQ+ Y DFE F LQPMD P NT Sbjct: 122 PEVDWICVSPKMGSKLVQRSGNELKVVIPQLGQDLLMYEALDFEHFYLQPMDSPTAARNT 181 Query: 186 NLAISYCFQNPKWRLSVQTHKFIGI 210 AI +C ++PKW+LSVQTHK + I Sbjct: 182 ERAIDHCKRHPKWKLSVQTHKILQI 206 >gi|260223401|emb|CBA33932.1| hypothetical protein Csp_B21500 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 225 Score = 320 bits (821), Expect = 9e-86, Method: Composition-based stats. Identities = 126/209 (60%), Positives = 148/209 (70%), Gaps = 1/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y +KEIF TLQGEG HAGR AVFCRF+GCNLWSGREQDR +A C+FCDTDFVG GT GG Sbjct: 17 YQVKEIFYTLQGEGSHAGRPAVFCRFAGCNLWSGREQDRATAVCKFCDTDFVGTDGTLGG 76 Query: 64 RYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +++ Q LA+ I QW G+ R+ V+TGGEPLLQVD LI AL+ GF+IAVETNGT+ Sbjct: 77 KFSTAQALAERIAAQWPAGDTAHRFVVMTGGEPLLQVDTALIDALHALGFQIAVETNGTV 136 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+GIDWICVSPKAG + G ELKLV+PQ ++ E DF+ LQPMD P Sbjct: 137 LVPEGIDWICVSPKAGSQWIQRQGHELKLVWPQAGITLEECEAADFKHRYLQPMDSPQRA 196 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 N I+ C Q P WRLS+QTHK GIR Sbjct: 197 ANIETCITQCMQRPAWRLSLQTHKITGIR 225 >gi|103488122|ref|YP_617683.1| hypothetical protein Sala_2645 [Sphingopyxis alaskensis RB2256] gi|98978199|gb|ABF54350.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256] Length = 210 Score = 320 bits (820), Expect = 9e-86, Method: Composition-based stats. Identities = 130/209 (62%), Positives = 154/209 (73%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG GR AVFCRF+GCNLWSGRE DR ++ C FCDTDFVG+ G+ GG Sbjct: 3 YAVKEIFKTLQGEGAQMGRAAVFCRFAGCNLWSGREGDRTTSVCTFCDTDFVGMDGSGGG 62 Query: 64 RYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ DQ LAD IE +W G + RY VLTGGEPLLQVD L+ AL+ RGFEIA+ETNGT Sbjct: 63 RFADDQALADAIESEW-AGARADRYVVLTGGEPLLQVDQDLVDALHTRGFEIAIETNGTQ 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+G+DWICVSPKA +L + G ELKLV+PQ +PE + FE F LQPMD P Sbjct: 122 PAPRGLDWICVSPKADAELVLLAGNELKLVYPQEKAAPERFEHLAFEHFFLQPMDSPTAA 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 N AI+YC QNP+WRLS+Q+HK IGIR Sbjct: 182 ANLEAAITYCTQNPRWRLSLQSHKMIGIR 210 >gi|187478511|ref|YP_786535.1| hypothetical protein BAV2019 [Bordetella avium 197N] gi|115423097|emb|CAJ49628.1| conserved hypothetical protein [Bordetella avium 197N] Length = 210 Score = 320 bits (820), Expect = 1e-85, Method: Composition-based stats. Identities = 126/210 (60%), Positives = 147/210 (70%), Gaps = 2/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS KEIF TLQGEG AGR AVFCRFSGCNLWSGRE DR +A C FCDTDFVG G Sbjct: 1 MTYSAKEIFKTLQGEGAQAGRAAVFCRFSGCNLWSGRESDRAAAACTFCDTDFVGSDGEG 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + LAD I W ++ GRY V TGGEPLLQ+D LI A++ +GF IA+ETNG Sbjct: 61 GGKFRDAQALADTIARTW-GPDRAGRYVVFTGGEPLLQLDEALIDAVHAQGFTIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T+ P G+DWICVSPK + GQELKLVFPQV PE + G DFE F LQP+D P Sbjct: 120 TLPVPAGVDWICVSPKGRAPVVQTRGQELKLVFPQVEAPPEAFAGLDFEHFFLQPLDSPL 179 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +T A+ YC +P+WRLSVQTHK+IGI Sbjct: 180 RRAHTEAAVQYCMAHPQWRLSVQTHKYIGI 209 >gi|83859604|ref|ZP_00953124.1| hypothetical protein OA2633_06384 [Oceanicaulis alexandrii HTCC2633] gi|83851963|gb|EAP89817.1| hypothetical protein OA2633_06384 [Oceanicaulis alexandrii HTCC2633] Length = 209 Score = 319 bits (819), Expect = 1e-85, Method: Composition-based stats. Identities = 122/210 (58%), Positives = 151/210 (71%), Gaps = 3/210 (1%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS+KE+FLT+QGEGG GR AVF RF+GCNLWSG E+DR SA C+FCDTDFVG+ G Sbjct: 1 MTYSVKEMFLTVQGEGGQTGRPAVFLRFAGCNLWSGLERDRASAICQFCDTDFVGVDGVN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + LAD + W G + Y V TGGEPLLQ+D PLI AL++ GF IAVETNG Sbjct: 61 GGKFKTAEALADKVASLWPGGGEP--YVVCTGGEPLLQLDAPLIDALHEAGFRIAVETNG 118 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 TI+ P+GIDW+CVSPK+ LK G ELKLV+PQ PE + G DF++F LQPMDGP Sbjct: 119 TIKAPEGIDWVCVSPKSTAPLKQTSGDELKLVYPQPEAMPELFSGLDFKQFRLQPMDGPD 178 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +N A YC Q+P+W LS+QTHK+I + Sbjct: 179 QMKNAQAAFEYCLQHPQWMLSLQTHKWINV 208 >gi|148253795|ref|YP_001238380.1| hypothetical protein BBta_2298 [Bradyrhizobium sp. BTAi1] gi|146405968|gb|ABQ34474.1| hypothetical protein BBta_2298 [Bradyrhizobium sp. BTAi1] Length = 210 Score = 319 bits (818), Expect = 2e-85, Method: Composition-based stats. Identities = 130/208 (62%), Positives = 150/208 (72%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF+TLQGEG AGR AVFCRF+GCNLWSGRE DR +A CRFCDTDFVG GT GG Sbjct: 3 YAVKEIFMTLQGEGALAGRAAVFCRFAGCNLWSGREADRATATCRFCDTDFVGTDGTFGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 RY+ TG RY +LTGGEPLLQVD LI AL+ R F + +ETNGT+ Sbjct: 63 RYDDAAALAAAIAGQWTGGAADRYTILTGGEPLLQVDADLIAALHARDFAVGIETNGTLI 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 PP GIDWICVSPKAG +LK++ G ELKLV+PQ PE + F+RFSLQPMDGP Sbjct: 123 PPDGIDWICVSPKAGAELKLQQGHELKLVYPQDGAEPERFADLAFQRFSLQPMDGPEAAA 182 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT AI YC +P+WRLS+QTHK IGIR Sbjct: 183 NTARAIQYCQHHPQWRLSLQTHKMIGIR 210 >gi|58039977|ref|YP_191941.1| hypothetical protein GOX1543 [Gluconobacter oxydans 621H] gi|58002391|gb|AAW61285.1| Hypothetical protein GOX1543 [Gluconobacter oxydans 621H] Length = 213 Score = 318 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 124/210 (59%), Positives = 146/210 (69%), Gaps = 3/210 (1%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE+F+TLQGEG GR +VFCRF+GCNLWSGREQDR +A C FCDTDF+G G GG Sbjct: 3 YAVKEMFVTLQGEGAQTGRASVFCRFAGCNLWSGREQDRATAACSFCDTDFIGTDGEGGG 62 Query: 64 RY-NVDQLADLIEEQWI--TGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 R+ D LAD I W E RY V TGGEPLLQ+D LI A+ RGFEIAVETNG Sbjct: 63 RFETADALADTIAACWTSTADESGRRYVVFTGGEPLLQLDDALIAAVKARGFEIAVETNG 122 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 TI P GIDW+CVSPK G L G ELKLV+PQ + PE + F F LQPMDGP Sbjct: 123 TIAAPAGIDWVCVSPKPGGALVQTEGAELKLVYPQPELPPEMFEKLSFRHFWLQPMDGPD 182 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A+++C ++P+WRLS+QTHK IGI Sbjct: 183 RIANTEAAVAHCLRHPRWRLSLQTHKLIGI 212 >gi|170748800|ref|YP_001755060.1| hypothetical protein Mrad2831_2382 [Methylobacterium radiotolerans JCM 2831] gi|170655322|gb|ACB24377.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM 2831] Length = 210 Score = 318 bits (816), Expect = 3e-85, Method: Composition-based stats. Identities = 120/207 (57%), Positives = 143/207 (69%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG AGR AVFCRF+GCNLWSGRE DR +A CRFCDTDFVG+ G GG Sbjct: 3 YAVKEIFHTLQGEGAQAGRAAVFCRFAGCNLWSGREADRAAAACRFCDTDFVGMDGEGGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R+ G E RY V TGGEPLLQ+D PLI+A++ GFEIA+ETNGT+ Sbjct: 63 RFADAASLADAIAATWAGGAENRYVVFTGGEPLLQLDTPLIEAVHAAGFEIAIETNGTLP 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 P GIDWICVSPK L G ELKLV+PQ + P ++G F+ LQPMDGP Sbjct: 123 APPGIDWICVSPKGSNALAQVSGHELKLVYPQADADPAAFVGLAFQHRFLQPMDGPDRAA 182 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 +T AI+YC ++ +WRLS+QTHK IGI Sbjct: 183 STEAAIAYCRRDARWRLSLQTHKMIGI 209 >gi|162148726|ref|YP_001603187.1| hypothetical protein GDI_2954 [Gluconacetobacter diazotrophicus PAl 5] gi|209545507|ref|YP_002277736.1| hypothetical protein Gdia_3395 [Gluconacetobacter diazotrophicus PAl 5] gi|161787303|emb|CAP56897.1| conserved protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533184|gb|ACI53121.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] Length = 211 Score = 318 bits (816), Expect = 3e-85, Method: Composition-based stats. Identities = 131/208 (62%), Positives = 155/208 (74%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y+IKE+F TLQGEG HAGR AVFCRF+GCNLWSGRE DR +A CRFCDTDFVG GT GG Sbjct: 3 YAIKEMFATLQGEGAHAGRAAVFCRFAGCNLWSGREADRATAVCRFCDTDFVGTDGTGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ + LAD I W +E + V TGGEPLLQ+D LI A+++RGFEIAVETNGT+ Sbjct: 63 RFADASSLADAIAATWEAPGREHAFVVFTGGEPLLQLDDALIGAVHERGFEIAVETNGTL 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P G+DWICVSPKAG DL + G ELKLV+PQ ++ PE G DF +F LQPMDGP Sbjct: 123 PVPPGVDWICVSPKAGADLVQRTGHELKLVYPQPDLLPERVAGLDFRQFWLQPMDGPAQA 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A++YC +P+WRLS+QTHK IGI Sbjct: 183 ANTAAAVAYCRAHPRWRLSLQTHKLIGI 210 >gi|296445573|ref|ZP_06887529.1| Radical SAM domain protein [Methylosinus trichosporium OB3b] gi|296256978|gb|EFH04049.1| Radical SAM domain protein [Methylosinus trichosporium OB3b] Length = 210 Score = 318 bits (816), Expect = 3e-85, Method: Composition-based stats. Identities = 121/208 (58%), Positives = 141/208 (67%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE F TLQGEG H GR AVFCRF+GCNLWSGRE DR A CRFCDTDFVG G GG Sbjct: 3 YAVKEAFKTLQGEGRHVGRAAVFCRFAGCNLWSGREIDRAEAVCRFCDTDFVGTNGEGGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R+ GE+E R+ VLTGGEP+LQ+D L+ AL+ GFEIA+ETNGT Sbjct: 63 RFETAAALAAHLAGLWGGERERRFVVLTGGEPMLQIDAALVDALHDAGFEIAIETNGTRA 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 P IDWICVSPKAG L G ELKLV+PQ PE + G F+ F LQPMDGP + Sbjct: 123 APSEIDWICVSPKAGAPLVQSSGDELKLVYPQPGAEPELFEGLAFDHFLLQPMDGPEAAQ 182 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT A+ YC +P+WR S+QTHK IG+R Sbjct: 183 NTRAAVDYCLAHPRWRFSLQTHKTIGVR 210 >gi|326318538|ref|YP_004236210.1| Radical SAM domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375374|gb|ADX47643.1| Radical SAM domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 212 Score = 318 bits (816), Expect = 3e-85, Method: Composition-based stats. Identities = 129/212 (60%), Positives = 147/212 (69%), Gaps = 2/212 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS+KEIF TLQGEGG AG AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG GT Sbjct: 1 MTYSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWSGREEDRSSAICRFCDTDFVGTDGTL 60 Query: 62 GGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG+Y D LAD+I QW + + R VLTGGEPLLQ+D PLI AL+ RG IAVE+NG Sbjct: 61 GGKYAQADALADVIAAQWPAHDADHRLVVLTGGEPLLQLDTPLIDALHARGMRIAVESNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-DFERFSLQPMDGP 179 T+ P GIDW+CVSPKAG + GQELKLV+PQ FE LQPMDGP Sbjct: 121 TVAAPPGIDWLCVSPKAGAPWVQRAGQELKLVWPQPGFDLAELENATRFEHRFLQPMDGP 180 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT+L I+ C + P WRLS+QTHK GIR Sbjct: 181 EQAANTSLCIAACMERPAWRLSLQTHKLTGIR 212 >gi|90422441|ref|YP_530811.1| hypothetical protein RPC_0922 [Rhodopseudomonas palustris BisB18] gi|90104455|gb|ABD86492.1| Radical SAM [Rhodopseudomonas palustris BisB18] Length = 210 Score = 318 bits (815), Expect = 4e-85, Method: Composition-based stats. Identities = 134/209 (64%), Positives = 160/209 (76%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR AVFCRF+GCNLWSGR+ DR +A+C+FCDTDFVG GT G Sbjct: 3 YAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWSGRDSDRETAKCQFCDTDFVGTDGTLGD 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY + +LA +I QW TG+ + RY VLTGGEPLLQ+D LI AL+ RGF + VETNGT+ Sbjct: 63 RYASAAELAAVIASQW-TGDDKFRYVVLTGGEPLLQLDAKLIAALHGRGFGVGVETNGTL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 PP GIDW+CVSPKAG DL ++ G ELKLV+PQ PE + FERFSLQPMDG Sbjct: 122 APPDGIDWLCVSPKAGADLVLRRGNELKLVYPQRGALPELFADLGFERFSLQPMDGAEAA 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT AI+YC +P+WRLS+QTHK +GIR Sbjct: 182 ANTASAIAYCLAHPQWRLSLQTHKTLGIR 210 >gi|121603954|ref|YP_981283.1| hypothetical protein Pnap_1045 [Polaromonas naphthalenivorans CJ2] gi|120592923|gb|ABM36362.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2] Length = 211 Score = 317 bits (814), Expect = 5e-85, Method: Composition-based stats. Identities = 126/209 (60%), Positives = 144/209 (68%), Gaps = 1/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y +KEIF TLQGEG HAGR A+FCRF+GCNLWSGRE DR +A CRFCDTDFVG GT GG Sbjct: 3 YQVKEIFYTLQGEGSHAGRPAIFCRFAGCNLWSGREPDRATAVCRFCDTDFVGTDGTLGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ N + LA IE QW G+ R+ V+TGGEPLLQVD LI AL+ RGF IAVETNGTI Sbjct: 63 KFKNAEALAGCIEAQWPAGDSAHRFVVMTGGEPLLQVDGALIAALHARGFVIAVETNGTI 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDWICVSPKAG + G ELK+V+PQ + F LQPMD P Sbjct: 123 AAPPGIDWICVSPKAGAPWIQREGHELKVVWPQPALDWAELEAARFTHRYLQPMDNPAWR 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT I+ C +NP WRLS+QTHK GIR Sbjct: 183 NNTEACIALCLENPAWRLSLQTHKITGIR 211 >gi|237745834|ref|ZP_04576314.1| organic radical activating enzyme [Oxalobacter formigenes HOxBLS] gi|229377185|gb|EEO27276.1| organic radical activating enzyme [Oxalobacter formigenes HOxBLS] Length = 234 Score = 317 bits (814), Expect = 6e-85, Method: Composition-based stats. Identities = 120/208 (57%), Positives = 146/208 (70%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIF TLQGEG GR AVFCRFSGCNLWSGREQDR A CRFCDTDFVG G +GG Sbjct: 26 YSVKEIFYTLQGEGARTGRPAVFCRFSGCNLWSGREQDRARAICRFCDTDFVGTSGERGG 85 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ ++LA +I W E RY V TGGEPLLQ+D PLI +++ GFEIA+ETNGTI Sbjct: 86 KFPEAEKLASVIISLWPREHAENRYVVFTGGEPLLQLDRPLIGIMHRAGFEIAIETNGTI 145 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+G+DW+CVSPK G L +K G ELK+V PQ + +Y F F +QPMDG E Sbjct: 146 PVPEGVDWVCVSPKVGSTLVVKSGDELKVVIPQAGQNLADYEDLSFSHFYVQPMDGENRE 205 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 N +AI C +NPKW+L +QTHK++ I Sbjct: 206 RNIKMAIDTCLKNPKWKLGLQTHKYLQI 233 >gi|154247119|ref|YP_001418077.1| hypothetical protein Xaut_3190 [Xanthobacter autotrophicus Py2] gi|154161204|gb|ABS68420.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2] Length = 211 Score = 317 bits (813), Expect = 6e-85, Method: Composition-based stats. Identities = 127/208 (61%), Positives = 150/208 (72%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE+FLTLQGEG AGR AVFCRF+GCNLWSGRE DR AQCRFCDTDFVG+ G GG Sbjct: 3 YAVKEMFLTLQGEGAQAGRAAVFCRFAGCNLWSGREDDRAEAQCRFCDTDFVGMDGEGGG 62 Query: 64 RYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ W + E R+ V TGGEPLLQ+D L+ A++ GFEIAVETNGT+ Sbjct: 63 RFADAATLAAAIAATWGSAAPERRFVVFTGGEPLLQLDTALVDAVHALGFEIAVETNGTV 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 + P GIDWIC+SPKAG DLK+ G ELKLVFPQ ++PE G DF F LQPMDGP Sbjct: 123 DAPGGIDWICMSPKAGTDLKVTRGHELKLVFPQPGLAPEGLAGLDFTHFFLQPMDGPDRL 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A++YC +P+WRLS+QTHK IGI Sbjct: 183 RNTEAAVAYCLSHPRWRLSLQTHKMIGI 210 >gi|120612485|ref|YP_972163.1| hypothetical protein Aave_3844 [Acidovorax citrulli AAC00-1] gi|120590949|gb|ABM34389.1| conserved hypothetical protein [Acidovorax citrulli AAC00-1] Length = 212 Score = 316 bits (812), Expect = 9e-85, Method: Composition-based stats. Identities = 129/212 (60%), Positives = 147/212 (69%), Gaps = 2/212 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS+KEIF TLQGEGG AG AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG GT Sbjct: 1 MTYSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWSGREEDRSSAVCRFCDTDFVGTDGTL 60 Query: 62 GGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG+Y + LAD+I QW + + R VLTGGEPLLQ+D PLI AL+ RG IAVE+NG Sbjct: 61 GGKYAQAEALADVIAAQWPAHDADHRLVVLTGGEPLLQLDTPLIDALHARGMRIAVESNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS-PENYIGFDFERFSLQPMDGP 179 T+ P GIDW+CVSPKAG + GQELKLV+PQ E FE LQPMDGP Sbjct: 121 TVAAPPGIDWLCVSPKAGAPWVQRAGQELKLVWPQPGFDLAELESATRFEHRFLQPMDGP 180 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT L I+ C + P WRLS+QTHK GIR Sbjct: 181 DQAANTGLCIAACMERPAWRLSLQTHKLTGIR 212 >gi|153876026|ref|ZP_02003554.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152067510|gb|EDN66446.1| conserved hypothetical protein [Beggiatoa sp. PS] Length = 209 Score = 316 bits (811), Expect = 1e-84, Method: Composition-based stats. Identities = 121/208 (58%), Positives = 151/208 (72%), Gaps = 3/208 (1%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIF +LQGEG GR A+FCRF+GCNLWSGRE+DR A C+FCDT+F+G G GG Sbjct: 3 YSVKEIFYSLQGEGHQTGRAAIFCRFAGCNLWSGREEDRSIASCQFCDTNFIGTNGQNGG 62 Query: 64 RYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ Q LA+ + I K + TGGEPLLQ+D PLI+A + GFEIA+ETNGT+ Sbjct: 63 KFTSAQALAEKVA--TIGMMKHFPLIICTGGEPLLQLDEPLIKAFHHIGFEIAIETNGTL 120 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDWICVSPK LK++ G ELKLVFPQ N PE + FDF+ F LQPMDGP L+ Sbjct: 121 PAPPNIDWICVSPKGNAPLKLQTGNELKLVFPQPNAPPELFEQFDFQYFFLQPMDGPELK 180 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +NT LA+ YC ++P+WRLS+QTHK +GI Sbjct: 181 KNTQLALRYCLEHPQWRLSLQTHKLLGI 208 >gi|34498964|ref|NP_903179.1| hypothetical protein CV_3509 [Chromobacterium violaceum ATCC 12472] gi|34104813|gb|AAQ61170.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 211 Score = 316 bits (811), Expect = 1e-84, Method: Composition-based stats. Identities = 128/212 (60%), Positives = 149/212 (70%), Gaps = 2/212 (0%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y++KEIF TLQGEG AGR AVFCRF+GCNLWSGRE+DR A C+FCDTDFVG G Sbjct: 1 MTTYTVKEIFYTLQGEGRQAGRAAVFCRFAGCNLWSGREEDRAKAVCQFCDTDFVG-AGP 59 Query: 61 KGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GG+++ LA I +W Y V TGGEPLLQ+D LI AL+ +GFEIAVETN Sbjct: 60 DGGKFDGAAALAARIAAEWPKDAGGSPYVVCTGGEPLLQLDAELIGALHAQGFEIAVETN 119 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GT+ P G+DWICVSPKAG +LK + G ELKLV+PQ PE DF F LQPMDGP Sbjct: 120 GTVAAPAGLDWICVSPKAGAELKQRAGDELKLVYPQAAQMPETVADLDFGTFYLQPMDGP 179 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 L NT AI+YC +P+WRLSVQTHK + IR Sbjct: 180 ELAANTRAAIAYCMAHPQWRLSVQTHKVVDIR 211 >gi|13474945|ref|NP_106515.1| hypothetical protein msl8680 [Mesorhizobium loti MAFF303099] gi|14025701|dbj|BAB52301.1| msl8680 [Mesorhizobium loti MAFF303099] Length = 211 Score = 315 bits (809), Expect = 2e-84, Method: Composition-based stats. Identities = 123/208 (59%), Positives = 147/208 (70%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE DR A C FCDTDFVG+ G G Sbjct: 3 YAVKEIFYTLQGEGRNAGRAAVFCRFAGCNLWSGREGDRAKAFCGFCDTDFVGVDGPGGR 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + QLA +E+ W R+ VLTGGEPLLQ+D L++AL+ FEIAVETNGTI Sbjct: 63 HFDTARQLALAVEQAWRGQGAGQRFVVLTGGEPLLQIDEELLEALHCLAFEIAVETNGTI 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDW+CVSPK L + G ELKLV+PQ+ PE++ FE LQPMDGP E Sbjct: 123 PTPAGIDWLCVSPKCNARLVVMAGDELKLVYPQIGAEPEHFEVLAFEHLLLQPMDGPERE 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A++YC NP+WRLS+QTHKF+GI Sbjct: 183 ANTAAAVAYCLANPRWRLSLQTHKFLGI 210 >gi|217977590|ref|YP_002361737.1| radical SAM domain protein [Methylocella silvestris BL2] gi|217502966|gb|ACK50375.1| radical SAM domain protein [Methylocella silvestris BL2] Length = 211 Score = 315 bits (809), Expect = 2e-84, Method: Composition-based stats. Identities = 125/211 (59%), Positives = 152/211 (72%), Gaps = 2/211 (0%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y++KEIF TLQGEG AGR AVFCRF+GCNLWSGRE+DR +A C FCDTDF+G G Sbjct: 1 MGRYAVKEIFPTLQGEGAQAGRAAVFCRFAGCNLWSGREKDRAAAACPFCDTDFIGTDGP 60 Query: 61 KGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GG + ++LA IE W G GRY V TGGEPLLQ+D LI A++ RGFE AVETN Sbjct: 61 GGGVFGGAEELAGAIEAAW-LGGPAGRYVVFTGGEPLLQLDDALIAAVHARGFEAAVETN 119 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GT+EPP G+DW+CVSPKAG + + G ELKLV+PQ ++ P+ G F F LQPMDG Sbjct: 120 GTLEPPAGVDWLCVSPKAGAPIVVTAGSELKLVYPQDDLLPDALSGLQFAHFWLQPMDGA 179 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ NT A++YC +P WRLS+QTHK IGI Sbjct: 180 NVDANTKAAVAYCLAHPDWRLSLQTHKLIGI 210 >gi|148554323|ref|YP_001261905.1| organic radical activating-like protein [Sphingomonas wittichii RW1] gi|148499513|gb|ABQ67767.1| Organic radical activating enzymes-like protein [Sphingomonas wittichii RW1] Length = 210 Score = 315 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 130/212 (61%), Positives = 152/212 (71%), Gaps = 3/212 (1%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y++KE+FLTLQGEG GR AVF RF+GCNLWSGRE+DR AQCRFCDTDFVG+ G Sbjct: 1 MAGYAVKEMFLTLQGEGVQVGRRAVFLRFAGCNLWSGREEDRADAQCRFCDTDFVGLDGD 60 Query: 61 KGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GGRY + D LAD W G+ G + V+TGGEPLLQVD L+ AL RGFE AVETN Sbjct: 61 NGGRYPHADALADKAIALW--GDLAGAFIVMTGGEPLLQVDDALVAALKARGFETAVETN 118 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GT P GIDWICVSPKAG D+ ++ G ELKLV+PQ + P G+DFE F LQPMDG Sbjct: 119 GTQPAPAGIDWICVSPKAGTDIVLRRGNELKLVWPQPGIDPAALEGWDFEHFLLQPMDGA 178 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 L+E AI+Y +P+WRLS QTHK +GIR Sbjct: 179 QLDEARAAAIAYVMDHPRWRLSTQTHKVVGIR 210 >gi|33596287|ref|NP_883930.1| hypothetical protein BPP1653 [Bordetella parapertussis 12822] gi|33602051|ref|NP_889611.1| hypothetical protein BB3075 [Bordetella bronchiseptica RB50] gi|33566056|emb|CAE36954.1| conserved hypothetical protein [Bordetella parapertussis] gi|33576489|emb|CAE33567.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 210 Score = 315 bits (807), Expect = 3e-84, Method: Composition-based stats. Identities = 115/207 (55%), Positives = 140/207 (67%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KE+F TLQGEG AGR AVFCRF+GCNLW+GRE DR A C FCDTDFVG G GG Sbjct: 3 YSVKELFKTLQGEGAQAGRAAVFCRFAGCNLWTGRESDRAGAACTFCDTDFVGTDGQGGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 ++ RY V TGGEPLLQ+D L+QA++ +GF +A+ETNGT+ Sbjct: 63 KFADAAGLADAIAACWGEHPADRYVVFTGGEPLLQLDEALLQAVHAQGFTVAIETNGTLP 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 PP GIDWICVSPK + ++ G ELKLVFPQ + PE + FE F LQPMDGP Sbjct: 123 PPPGIDWICVSPKGRAPVVVERGHELKLVFPQADARPEAFAHLAFEHFFLQPMDGPARAA 182 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 +T A+ YC +P+WRLS+QTHK+IGI Sbjct: 183 HTAQAVQYCLDHPQWRLSLQTHKYIGI 209 >gi|41019307|gb|AAR98565.1| GntS [Micromonospora echinospora] Length = 212 Score = 315 bits (807), Expect = 3e-84, Method: Composition-based stats. Identities = 117/211 (55%), Positives = 140/211 (66%), Gaps = 3/211 (1%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y IKEIF TLQGEG HAGR AVFCRF+ CNLW+GRE++R A CRFCDTDFVG G G Sbjct: 1 MYRIKEIFYTLQGEGTHAGRPAVFCRFTSCNLWTGREEERYRAICRFCDTDFVGTDGPGG 60 Query: 63 GRYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GR+ G+ R Y V TGGEPLLQ+D + AL+ GFE+AVETN Sbjct: 61 GRFGTAAELAAAVAAAWQGQAHPRSRPYVVCTGGEPLLQLDEAAVSALHDAGFEVAVETN 120 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GT P GIDW CVSPKAG ++ + G +LKLV+PQ P + DF F LQPMDGP Sbjct: 121 GTRPAPPGIDWTCVSPKAGAEVVLTRGDDLKLVYPQPGAEPARFEHLDFTHFMLQPMDGP 180 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A+ YC ++P+WRLS+QTHK+IGI Sbjct: 181 DRVANTEAAVRYCLEHPQWRLSLQTHKYIGI 211 >gi|329889514|ref|ZP_08267857.1| radical SAM domain-containing protein [Brevundimonas diminuta ATCC 11568] gi|328844815|gb|EGF94379.1| radical SAM domain-containing protein [Brevundimonas diminuta ATCC 11568] Length = 211 Score = 314 bits (806), Expect = 4e-84, Method: Composition-based stats. Identities = 121/211 (57%), Positives = 150/211 (71%), Gaps = 1/211 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS KE+FLT+QGEGG AGR AVF RF+GCNLWSG E+DR +A C FCDTDFVG+ G Sbjct: 1 MTYSAKEVFLTVQGEGGQAGRPAVFLRFAGCNLWSGLERDRATAICTFCDTDFVGVNGDG 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ D +AD + W E + + V TGGEPL+Q+D LI AL+ RGFEIA+E+NG Sbjct: 61 GGKFKTADLMADHVAGMWRGREGDPKLVVCTGGEPLMQLDTLLIDALHARGFEIAIESNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T+ P+GIDWIC+SPKA + GQELKLV+PQ P+ + DF+ F LQPMDGP Sbjct: 121 TLVAPEGIDWICISPKADAPVVQTSGQELKLVYPQPLAMPDRFESLDFQHFWLQPMDGPD 180 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT AI YC +P+WRLSVQTHK+IG+R Sbjct: 181 QAANTAAAIEYCLTHPQWRLSVQTHKYIGVR 211 >gi|33593629|ref|NP_881273.1| hypothetical protein BP2659 [Bordetella pertussis Tohama I] gi|33563702|emb|CAE42935.1| conserved hypothetical protein [Bordetella pertussis Tohama I] Length = 210 Score = 314 bits (805), Expect = 6e-84, Method: Composition-based stats. Identities = 115/207 (55%), Positives = 140/207 (67%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KE+F TLQGEG AGR AVFCRF+GCNLW+GRE DR A C FCDTDFVG G GG Sbjct: 3 YSVKELFKTLQGEGAQAGRAAVFCRFAGCNLWTGRESDRAGAACTFCDTDFVGTDGQGGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 ++ RY V TGGEPLLQ+D L+QA++ +GF +A+ETNGT+ Sbjct: 63 KFADAAGLADAIAACWGEHPADRYVVFTGGEPLLQLDEALLQAVHAQGFTVAIETNGTLP 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 PP GIDWICVSPK + ++ G ELKLVFPQ + PE + FE F LQPMDGP Sbjct: 123 PPPGIDWICVSPKGRAPVVVERGHELKLVFPQADARPEAFAHLAFEHFFLQPMDGPARAA 182 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 +T A+ YC +P+WRLS+QTHK+IGI Sbjct: 183 HTTQAVQYCLDHPQWRLSLQTHKYIGI 209 >gi|160897280|ref|YP_001562862.1| hypothetical protein Daci_1837 [Delftia acidovorans SPH-1] gi|160362864|gb|ABX34477.1| conserved hypothetical protein [Delftia acidovorans SPH-1] Length = 212 Score = 313 bits (804), Expect = 8e-84, Method: Composition-based stats. Identities = 125/212 (58%), Positives = 151/212 (71%), Gaps = 2/212 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS+KEIF TLQGEGG AG A+FCRF+GCNLW+GREQDR SA C+FCDTDFVG GT Sbjct: 1 MTYSVKEIFYTLQGEGGQAGTPAIFCRFTGCNLWTGREQDRASAICQFCDTDFVGTDGTL 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ D LA+ I QW G+ + R VLTGGEPLLQVD PLI AL+ RGF I+VE+NG Sbjct: 61 GGKFATADALAERILSQWPAGDSQHRMVVLTGGEPLLQVDEPLIAALHARGFRISVESNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-YIGFDFERFSLQPMDGP 179 T+ P+GIDW+C+SPKAG + + GQELKLV+PQ + G F+R+ LQPMD Sbjct: 121 TVAAPEGIDWLCISPKAGAEWVQRSGQELKLVWPQPGFDLQAIEAGTRFDRYFLQPMDNV 180 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT I+ C Q P WRLS+QTHK GIR Sbjct: 181 LQADNTAACIAQCLQRPAWRLSLQTHKLTGIR 212 >gi|20804093|emb|CAD31296.1| HYPOTHETICAL CONSERVED PROTEIN [Mesorhizobium loti R7A] Length = 211 Score = 313 bits (804), Expect = 8e-84, Method: Composition-based stats. Identities = 120/208 (57%), Positives = 145/208 (69%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE DR A C FCDTDFVG+ G GG Sbjct: 3 YAVKEIFYTLQGEGRNAGRAAVFCRFAGCNLWSGREGDRARAFCEFCDTDFVGVDGPGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + A +E+ W R VLTGGEPLLQ+D L++AL+ FEIAVETNGTI Sbjct: 63 HFATAQEFALAVEQAWRGSGTRQRLVVLTGGEPLLQIDEELLEALHSLAFEIAVETNGTI 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 GIDW+CVSPK L + G ELKLV+P++ PE++ FE LQPMDGP E Sbjct: 123 PTLAGIDWLCVSPKCNARLVVMAGDELKLVYPRIGAEPEHFEVLAFEHLLLQPMDGPERE 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A++YC NP+WRLS+QTHKF+GI Sbjct: 183 ANTAAAVAYCLANPRWRLSLQTHKFLGI 210 >gi|83749823|ref|ZP_00946794.1| Queuosine biosynthesis protein QueE [Ralstonia solanacearum UW551] gi|207723445|ref|YP_002253844.1| organic radical activating enzyme protein [Ralstonia solanacearum MolK2] gi|207743201|ref|YP_002259593.1| organic radical activating enzyme protein [Ralstonia solanacearum IPO1609] gi|83723503|gb|EAP70710.1| Queuosine biosynthesis protein QueE [Ralstonia solanacearum UW551] gi|206588646|emb|CAQ35609.1| organic radical activating enzyme protein [Ralstonia solanacearum MolK2] gi|206594598|emb|CAQ61525.1| organic radical activating enzyme protein [Ralstonia solanacearum IPO1609] Length = 224 Score = 313 bits (803), Expect = 9e-84, Method: Composition-based stats. Identities = 125/212 (58%), Positives = 148/212 (69%), Gaps = 2/212 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT Sbjct: 13 MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRAAAVCQFCDTDFVGTDGTL 72 Query: 62 GGRY-NVDQLADLIEEQWIT-GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GG+Y D LADL+ QW V TGGEPLLQ+D PLI AL+ RGFEIAVETN Sbjct: 73 GGKYATADALADLVAAQWPADATGGQPLVVCTGGEPLLQLDRPLIDALHARGFEIAVETN 132 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GT+ P+GIDW+CVSPK G +L + G ELK+V PQ + Y DF F LQPMDGP Sbjct: 133 GTVAVPEGIDWVCVSPKMGAELVVTRGDELKVVIPQPGQDLDAYERLDFRHFFLQPMDGP 192 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT LA+ C + P+W LS+QTHK +GIR Sbjct: 193 LARQNTALAVELCQRRPRWHLSLQTHKMLGIR 224 >gi|114569269|ref|YP_755949.1| radical SAM domain-containing protein [Maricaulis maris MCS10] gi|114339731|gb|ABI65011.1| Radical SAM domain protein [Maricaulis maris MCS10] Length = 209 Score = 312 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 123/207 (59%), Positives = 143/207 (69%), Gaps = 3/207 (1%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KE FLT+QGEG AGR AVF RFSGCNLWSGREQDR A C FCDTDFVG+ G GG Sbjct: 3 YSVKERFLTVQGEGAQAGRPAVFLRFSGCNLWSGREQDRHKAVCNFCDTDFVGMDGPGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ L D + E W G + V TGGEPLLQ+D LI AL+ RGFEIAVETNGT+ Sbjct: 63 RFKTAVSLVDAVAELWPGGGRP--LVVCTGGEPLLQLDTSLIDALHARGFEIAVETNGTV 120 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDWI VSPK + G ELKLV+PQ + P + +DF+RFSLQPMDGP + Sbjct: 121 RAPDGIDWITVSPKGTAPVVQTSGHELKLVYPQPELDPTAFEDWDFKRFSLQPMDGPQMM 180 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIG 209 EN A YC +P+W LS+QTHK+IG Sbjct: 181 ENAQAAFDYCLAHPQWSLSLQTHKWIG 207 >gi|85814032|emb|CAF31448.1| putative gentamicin production protein [Micromonospora echinospora] Length = 215 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 117/210 (55%), Positives = 139/210 (66%), Gaps = 3/210 (1%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y IKEIF TLQGEG HAGR AVFCRF+ CNLW+GRE++R A CRFCDTDFVG G GG Sbjct: 5 YRIKEIFYTLQGEGTHAGRPAVFCRFTSCNLWTGREEERYRAICRFCDTDFVGTDGPGGG 64 Query: 64 RYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 R+ G+ R Y V TGGEPLLQ+D + AL+ GFE+AVETNG Sbjct: 65 RFGTAAELAAAVAAAWQGQAHPRSRPYVVCTGGEPLLQLDEAAVSALHDAGFEVAVETNG 124 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T P GIDW CVSPKAG ++ + G +LKLV+PQ P + DF F LQPMDGP Sbjct: 125 TRPAPPGIDWTCVSPKAGAEVVLTRGDDLKLVYPQPGAEPARFEHLDFTHFMLQPMDGPD 184 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A+ YC ++P+WRLS+QTHK+IGI Sbjct: 185 RVANTEAAVRYCLEHPQWRLSLQTHKYIGI 214 >gi|224038930|gb|ACN38359.1| putative sisomicin production protein [Micromonospora inyonensis] Length = 215 Score = 311 bits (799), Expect = 3e-83, Method: Composition-based stats. Identities = 117/210 (55%), Positives = 140/210 (66%), Gaps = 3/210 (1%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y IKEIF TLQGEG HAGR AVFCRF+ CNLW+GRE+DR A C+FCDTDFVG G GG Sbjct: 5 YRIKEIFYTLQGEGTHAGRPAVFCRFTSCNLWTGREEDRHRAICQFCDTDFVGTDGPGGG 64 Query: 64 RYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 R+ G+ R Y V TGGEPLLQ+D + AL++ GFE+AVETNG Sbjct: 65 RFATAAELAAAVATAWRGQAHPRSRPYVVCTGGEPLLQLDEAAVAALHEAGFEVAVETNG 124 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T P G+DW+CVSPKAG DL + G +LKLV+PQ P + DF F LQPMDGP Sbjct: 125 TRPAPPGLDWVCVSPKAGADLVLTRGDDLKLVYPQPGAEPGRFEHLDFTHFMLQPMDGPD 184 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A+ YC ++P+WR S+QTHK+IGI Sbjct: 185 RVANTEAAVRYCLEHPQWRFSLQTHKYIGI 214 >gi|114328969|ref|YP_746126.1| queuosine biosynthesis protein QueE [Granulibacter bethesdensis CGDNIH1] gi|114317143|gb|ABI63203.1| queuosine biosynthesis protein QueE [Granulibacter bethesdensis CGDNIH1] Length = 220 Score = 311 bits (798), Expect = 4e-83, Method: Composition-based stats. Identities = 122/207 (58%), Positives = 143/207 (69%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIFLTLQGEG HAGR AVFCRF+GCNLWSGRE+DR A C FCDTDF+G+ G GG Sbjct: 13 YTVKEIFLTLQGEGIHAGRPAVFCRFAGCNLWSGREEDRQMAGCTFCDTDFIGMDGENGG 72 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 RY G E R+ VLTGGEPLLQVD LI AL++ F+IAVETNGT Sbjct: 73 RYPDAASLARAIAACWQGGAEHRFVVLTGGEPLLQVDAALIDALHEAHFQIAVETNGTQP 132 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 P G+DWICVSPKA L + GG ELKLVFPQ + PE + +F F LQP+D + Sbjct: 133 APAGLDWICVSPKADNPLVLTGGDELKLVFPQPDAPPERFEALNFRHFLLQPLDDSRRAD 192 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 +T AI YC +P+WRLSVQTHK +GI Sbjct: 193 HTRAAIEYCLHHPRWRLSVQTHKTLGI 219 >gi|312113885|ref|YP_004011481.1| hypothetical protein Rvan_1111 [Rhodomicrobium vannielii ATCC 17100] gi|311219014|gb|ADP70382.1| hypothetical protein Rvan_1111 [Rhodomicrobium vannielii ATCC 17100] Length = 213 Score = 311 bits (797), Expect = 5e-83, Method: Composition-based stats. Identities = 117/213 (54%), Positives = 145/213 (68%), Gaps = 4/213 (1%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y++KEIF TLQGEG GR AVF RF+GCNLW+G+ +D+ A CRFCDTDFVG G G Sbjct: 1 MYTVKEIFPTLQGEGAQVGRAAVFLRFAGCNLWTGQHKDKSKAFCRFCDTDFVGYDGPNG 60 Query: 63 GRY-NVDQLADLIEEQW---ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 G++ DQLAD++ W G+ Y V TGGEP LQ+D P+I AL KRGF +A+E+ Sbjct: 61 GKFETADQLADIVLGMWNSLTKGKTASPYVVCTGGEPTLQLDTPMIDALKKRGFTVAIES 120 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178 NGT P+G+DWIC+SPKAG L + G ELKLV+PQ P+ + FE F LQPMDG Sbjct: 121 NGTRPAPRGLDWICISPKAGVPLAQREGNELKLVYPQTGALPQLFERLKFEHFFLQPMDG 180 Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 P +N AI YC NP WRLS+Q HK +GIR Sbjct: 181 PQHRDNIEAAIRYCMANPPWRLSMQMHKLVGIR 213 >gi|304320027|ref|YP_003853670.1| hypothetical protein PB2503_02257 [Parvularcula bermudensis HTCC2503] gi|303298930|gb|ADM08529.1| hypothetical protein PB2503_02257 [Parvularcula bermudensis HTCC2503] Length = 213 Score = 311 bits (797), Expect = 5e-83, Method: Composition-based stats. Identities = 121/207 (58%), Positives = 140/207 (67%), Gaps = 2/207 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y+IKE + TLQGEG AGR AVF RF+GCNLWSGRE DR A CRFCDTDFVG G GG Sbjct: 8 YAIKECYYTLQGEGAQAGRAAVFLRFAGCNLWSGREIDREEAICRFCDTDFVGTDGPGGG 67 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R+ ++LA + W G Y V TGGEPLLQ+D PLI AL+ GFEI VETNGTI Sbjct: 68 RFVAEELAAHVASFWPGGG--SPYVVATGGEPLLQLDSPLIDALHDEGFEIGVETNGTIA 125 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 P G+DWICVSPK+ +L G ELKLVFPQ + P+ + G F+ F LQPMDGP+ Sbjct: 126 APAGLDWICVSPKSTAELVQTEGDELKLVFPQSDAPPDQFSGLAFDHFFLQPMDGPYQSI 185 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 + YC NP WRLS+QTHK IGI Sbjct: 186 AIATTVDYCRANPLWRLSLQTHKLIGI 212 >gi|114319183|ref|YP_740866.1| radical SAM domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114225577|gb|ABI55376.1| Radical SAM domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 209 Score = 311 bits (797), Expect = 5e-83, Method: Composition-based stats. Identities = 119/210 (56%), Positives = 141/210 (67%), Gaps = 3/210 (1%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS+ EI TLQGEG GR AVFCRF+GCNLWSGRE R SA CRFCDT FVG G+ Sbjct: 1 MTYSVHEIHYTLQGEGAQTGRPAVFCRFAGCNLWSGREAHRASAICRFCDTAFVGTGGSG 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GGR+ + ++LA+ + W G + V TGGEPLLQ+D LI AL++RGFE+AVETNG Sbjct: 61 GGRFRSANELAERLAGYWPGGGRP--LVVCTGGEPLLQLDSALIDALHRRGFEVAVETNG 118 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T P G+DWICVSPKAG L + G ELKLV PQ PE + F F LQPMDGP Sbjct: 119 TRPAPAGLDWICVSPKAGAPLVLTTGDELKLVHPQPGAEPERFQHLAFRHFFLQPMDGPE 178 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E NT + YC +P+W LS+QTHK +GI Sbjct: 179 REANTQACVDYCLAHPQWSLSLQTHKLLGI 208 >gi|319795394|ref|YP_004157034.1| radical SAM protein [Variovorax paradoxus EPS] gi|315597857|gb|ADU38923.1| Radical SAM domain protein [Variovorax paradoxus EPS] Length = 212 Score = 310 bits (796), Expect = 6e-83, Method: Composition-based stats. Identities = 128/212 (60%), Positives = 147/212 (69%), Gaps = 2/212 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS+KEIF TLQGEGG AG AVFCRF+GCNLW+GRE+DR SA CRFCDTDFVG GT Sbjct: 1 MTYSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWTGREEDRASAVCRFCDTDFVGTDGTL 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ DQLAD I QW + E R VLTGGEPLLQVD L+ AL+ R F IAVE+NG Sbjct: 61 GGKFKTADQLADTIAAQWPANDAEHRLVVLTGGEPLLQVDAALVDALHARRFRIAVESNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-DFERFSLQPMDGP 179 T+ P+GIDW+C+SPKAG + GQELKLV+PQ + DF LQPMDGP Sbjct: 121 TVAAPEGIDWLCISPKAGAPWVQQRGQELKLVWPQTAFDLDAMARTGDFTHRFLQPMDGP 180 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT L I+ C + P WRLSVQTHK GIR Sbjct: 181 DRVANTELCIAECMRQPAWRLSVQTHKITGIR 212 >gi|323135766|ref|ZP_08070849.1| hypothetical protein Met49242DRAFT_0236 [Methylocystis sp. ATCC 49242] gi|322398857|gb|EFY01376.1| hypothetical protein Met49242DRAFT_0236 [Methylocystis sp. ATCC 49242] Length = 210 Score = 310 bits (794), Expect = 9e-83, Method: Composition-based stats. Identities = 120/209 (57%), Positives = 147/209 (70%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y +KE F T+QGEG +AGRVAVFCRF+GCNLWSGRE+DR A C FCDT+F G+ G GG Sbjct: 3 YFVKEAFRTVQGEGVNAGRVAVFCRFAGCNLWSGREEDRAEAACNFCDTEFTGVDGEGGG 62 Query: 64 RYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ +LAD + W + E R+ VLTGGEP+LQVD L+ AL+ GFEIA+E+NGTI Sbjct: 63 KFPGARELADHLVAIW-GADDEDRFIVLTGGEPMLQVDPALVDALHNEGFEIAIESNGTI 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 GIDWICVSPKAG + G ELKLV+PQ V P + DF F LQPMDGP + Sbjct: 122 AAAPGIDWICVSPKAGAPIVQTSGSELKLVYPQPGVDPATFERLDFRHFLLQPMDGPEIV 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT A+ YC +P+WRLS+QTHK IG+R Sbjct: 182 RNTKAAVDYCLAHPRWRLSLQTHKMIGVR 210 >gi|103486840|ref|YP_616401.1| hypothetical protein Sala_1354 [Sphingopyxis alaskensis RB2256] gi|98976917|gb|ABF53068.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256] Length = 210 Score = 308 bits (791), Expect = 3e-82, Method: Composition-based stats. Identities = 120/209 (57%), Positives = 142/209 (67%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS+KEIFLTLQGEG AGR AVFCRF+GCNLW+GREQDR A CRFCDTDFVG GT G Sbjct: 3 YSVKEIFLTLQGEGAQAGRRAVFCRFAGCNLWTGREQDRAKAICRFCDTDFVGTDGTLGA 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +Y + LAD+I E W G + RY VLTGGEP+LQVD LI AL+ RGF IA+E+NGT+ Sbjct: 63 KYRDAAALADVIAESWGPGSDD-RYVVLTGGEPMLQVDDALIDALHARGFTIAIESNGTL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+ IDWICVSPKAG +L G ELKLV+PQ DF +QP+D Sbjct: 122 PIPRSIDWICVSPKAGSELVQSSGDELKLVWPQPGSDVAKLAALDFRHLLVQPLDDRNAA 181 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 N I +P+WRLS+QTHK +G+R Sbjct: 182 ANVQACIDLVMADPRWRLSLQTHKSLGLR 210 >gi|221065388|ref|ZP_03541493.1| conserved hypothetical protein [Comamonas testosteroni KF-1] gi|220710411|gb|EED65779.1| conserved hypothetical protein [Comamonas testosteroni KF-1] Length = 212 Score = 307 bits (788), Expect = 5e-82, Method: Composition-based stats. Identities = 122/212 (57%), Positives = 143/212 (67%), Gaps = 2/212 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS+KEIF TLQGEGG AG AVFCRF+GCNLW+GREQDR +A C+FCDTDFVG GT Sbjct: 1 MTYSVKEIFYTLQGEGGQAGTPAVFCRFAGCNLWTGREQDRPNAICQFCDTDFVGTDGTL 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ D LA+ I QW + R VLTGGEPLLQVD LI AL+ RGF I+VE+NG Sbjct: 61 GGKFATADALAERILSQWPADDSLHRMVVLTGGEPLLQVDEALIAALHARGFRISVESNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG-FDFERFSLQPMDGP 179 T+ P+GIDW+C+SPKAG D + GQELKLV+PQ DF+ + LQPMD Sbjct: 121 TVAAPEGIDWLCISPKAGADWIQRSGQELKLVWPQPTFDLAAIEASTDFQHYFLQPMDNA 180 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 N I C Q P WRLS+QTHK GIR Sbjct: 181 QQSGNITACIEQCMQRPGWRLSLQTHKLTGIR 212 >gi|83649266|ref|YP_437701.1| organic radical activating protein [Hahella chejuensis KCTC 2396] gi|83637309|gb|ABC33276.1| Organic radical activating enzyme [Hahella chejuensis KCTC 2396] Length = 217 Score = 307 bits (787), Expect = 7e-82, Method: Composition-based stats. Identities = 117/217 (53%), Positives = 145/217 (66%), Gaps = 10/217 (4%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y +KE F TLQGEG H GR AVFCRFS CNLW+GRE+DR A C FCDTDF+G+ G G Sbjct: 1 MYRVKEAFYTLQGEGAHQGRPAVFCRFSKCNLWTGREKDRAGAVCNFCDTDFIGVDGQNG 60 Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 G++ ++LAD I W E++ R+ V TGGEPLLQ+D PLI+A + RGFE+AVETNGT Sbjct: 61 GKFATAEELADHILAFWPP-EQDNRFVVCTGGEPLLQLDEPLIEAFHARGFEVAVETNGT 119 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + P GIDW+CVSPK ++ I ELKLV+PQ PE + R L PM P + Sbjct: 120 LPAPAGIDWLCVSPKGRAEVVITECDELKLVYPQPEAPPERFSDIRAGRHYLSPMANPLV 179 Query: 182 EE--------NTNLAISYCFQNPKWRLSVQTHKFIGI 210 E NT LA+ YC ++PKWRLSVQ HK +GI Sbjct: 180 REGNDEQKRRNTQLAMEYCMRHPKWRLSVQLHKILGI 216 >gi|299531400|ref|ZP_07044808.1| hypothetical protein CTS44_11451 [Comamonas testosteroni S44] gi|298720563|gb|EFI61512.1| hypothetical protein CTS44_11451 [Comamonas testosteroni S44] Length = 212 Score = 306 bits (784), Expect = 1e-81, Method: Composition-based stats. Identities = 121/212 (57%), Positives = 144/212 (67%), Gaps = 2/212 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS+KEIF TLQGEGG AG AVFCRF+GCNLW+GREQDR A C+FCDTDFVG GT Sbjct: 1 MTYSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWTGREQDRPKAICQFCDTDFVGTDGTL 60 Query: 62 GGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ D+LA+ I QW + R VLTGGEPLLQVD LI AL+ RGF I+VE+NG Sbjct: 61 GGKFTTADELAERILGQWPADDSRHRMVVLTGGEPLLQVDQALIAALHARGFRISVESNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG-FDFERFSLQPMDGP 179 T+ P+GIDW+C+SPKAG D + GQELKLV+PQ +F+ + LQPMD Sbjct: 121 TVTAPEGIDWLCISPKAGADWIQRSGQELKLVWPQPTFDLAAIEASTEFQHYFLQPMDNA 180 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 N I+ C Q P WRLS+QTHK GIR Sbjct: 181 QQSSNIAACIAQCMQRPGWRLSLQTHKLTGIR 212 >gi|296115261|ref|ZP_06833901.1| hypothetical protein GXY_05748 [Gluconacetobacter hansenii ATCC 23769] gi|295978164|gb|EFG84902.1| hypothetical protein GXY_05748 [Gluconacetobacter hansenii ATCC 23769] Length = 211 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 121/208 (58%), Positives = 141/208 (67%), Gaps = 1/208 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG AGR AVFCRF+GCNLWSGRE DR A CRFCDTDF+G G GG Sbjct: 3 YTVKEIFPTLQGEGSQAGRAAVFCRFAGCNLWSGREIDRDDATCRFCDTDFIGTDGMGGG 62 Query: 64 RYNVDQLADLIEEQWITG-EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ + + V TGGEPLLQ+D L+ A++ RGF IAVETNGTI Sbjct: 63 RFADAASLADAIAAAWPAASRRDAFVVFTGGEPLLQLDAALVAAMHARGFFIAVETNGTI 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDWIC+SPKAG L G ELKLVFPQ ++ PE G DF +F LQPMDGP Sbjct: 123 RAPDGIDWICMSPKAGAPLVQTSGHELKLVFPQPDLMPEQVAGLDFAQFWLQPMDGPERV 182 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT+ A+ YC +P+WRLS+QTHK IGI Sbjct: 183 SNTSHAVEYCMAHPQWRLSLQTHKLIGI 210 >gi|89093158|ref|ZP_01166108.1| hypothetical protein MED92_03737 [Oceanospirillum sp. MED92] gi|89082454|gb|EAR61676.1| hypothetical protein MED92_03737 [Oceanospirillum sp. MED92] Length = 210 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 112/209 (53%), Positives = 140/209 (66%), Gaps = 1/209 (0%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +YS+KEIF +LQGEG +GR ++FCRF+GCNLWSGREQDR A C FCDTDF+G G G Sbjct: 1 MYSVKEIFFSLQGEGAQSGRASIFCRFAGCNLWSGREQDREKAVCDFCDTDFIGTDGQNG 60 Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 G++ L + ++E W Y + TGGEP LQ+D LI ++ GFE+AVETNGT Sbjct: 61 GKFETAQALCNFLQEFWPNNSSIPPYIIFTGGEPALQLDQDLIDCCHEYGFEVAVETNGT 120 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 P GIDW+CVSPKA +L I G ELKLV+PQ PE + +F F LQPMDGP Sbjct: 121 KPLPSGIDWVCVSPKADAELVITKGDELKLVYPQALAMPEKFASLNFRHFYLQPMDGPAR 180 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + T I YC Q+PKW+LS+Q HK +GI Sbjct: 181 QLYTKEVIDYCLQHPKWKLSLQNHKVLGI 209 >gi|163850651|ref|YP_001638694.1| hypothetical protein Mext_1221 [Methylobacterium extorquens PA1] gi|163662256|gb|ABY29623.1| conserved hypothetical protein [Methylobacterium extorquens PA1] Length = 212 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 127/210 (60%), Positives = 147/210 (70%), Gaps = 4/210 (1%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE+F TLQGEG AGR AVFCRFSGCNLWSGRE+DR A CRFCDTDFVG+ G GG Sbjct: 3 YAVKELFHTLQGEGAQAGRAAVFCRFSGCNLWSGREEDRAGAACRFCDTDFVGMDGEGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ + + LAD I W G RY V TGGEPLLQ+D LI A++ RGFE+AVETNGT+ Sbjct: 63 RFASAEILADAIAATW-AGGTSNRYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGTL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFSLQPMDGPF 180 P GIDWICVSPKAG L G ELKLVFPQ +PE + F LQPMDGP Sbjct: 122 PAPPGIDWICVSPKAGNPLVQTSGDELKLVFPQAEAEAAPERFSDLPFRHHFLQPMDGPD 181 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +T A++YC N +WRLS+QTHK IGI Sbjct: 182 AAAHTAAAVAYCRSNARWRLSLQTHKIIGI 211 >gi|218529375|ref|YP_002420191.1| hypothetical protein Mchl_1382 [Methylobacterium chloromethanicum CM4] gi|240137705|ref|YP_002962176.1| hypothetical protein MexAM1_META1p1004 [Methylobacterium extorquens AM1] gi|218521678|gb|ACK82263.1| conserved hypothetical protein [Methylobacterium chloromethanicum CM4] gi|240007673|gb|ACS38899.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 212 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 127/210 (60%), Positives = 147/210 (70%), Gaps = 4/210 (1%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE+F TLQGEG AGR AVFCRFSGCNLWSGRE+DR A CRFCDTDFVG+ G GG Sbjct: 3 YAVKELFHTLQGEGAQAGRAAVFCRFSGCNLWSGREEDRAGAACRFCDTDFVGMDGEGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ + + LAD I W G RY V TGGEPLLQ+D LI A++ RGFE+AVETNGT+ Sbjct: 63 RFASAEILADAIAATW-AGGTANRYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGTL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFSLQPMDGPF 180 P GIDWICVSPKAG L G ELKLVFPQ +PE + F LQPMDGP Sbjct: 122 PAPPGIDWICVSPKAGNPLVQTSGDELKLVFPQAEAEAAPERFSDLPFRHHFLQPMDGPD 181 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +T A++YC N +WRLS+QTHK IGI Sbjct: 182 AAAHTAAAVAYCRSNARWRLSLQTHKIIGI 211 >gi|254560274|ref|YP_003067369.1| hypothetical protein METDI1804 [Methylobacterium extorquens DM4] gi|254267552|emb|CAX23394.1| conserved hypothetical protein [Methylobacterium extorquens DM4] Length = 212 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 122/209 (58%), Positives = 142/209 (67%), Gaps = 2/209 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE+F TLQGEG AGR AVFCRFSGCNLWSGRE+DR A CRFCDTDFVG+ G GG Sbjct: 3 YAVKELFHTLQGEGAQAGRAAVFCRFSGCNLWSGREEDRAGAACRFCDTDFVGMDGEGGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R+ ++ G RY V TGGEPLLQ+D LI A++ RGFE+AVETNGT+ Sbjct: 63 RFASAEILAGAIAATWAGGTANRYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGTLP 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFSLQPMDGPFL 181 P GIDWICVSPKAG L G ELKLVFPQ +PE + F LQPMDGP Sbjct: 123 APPGIDWICVSPKAGNPLVQTSGDELKLVFPQAEAEAAPERFSDLPFRHHFLQPMDGPDA 182 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +T A++YC N +WRLS+QTHK IGI Sbjct: 183 AAHTAAAVAYCRSNARWRLSLQTHKIIGI 211 >gi|264679996|ref|YP_003279905.1| hypothetical protein CtCNB1_3863 [Comamonas testosteroni CNB-2] gi|262210511|gb|ACY34609.1| conserved hypothetical protein [Comamonas testosteroni CNB-2] Length = 212 Score = 305 bits (781), Expect = 3e-81, Method: Composition-based stats. Identities = 121/212 (57%), Positives = 144/212 (67%), Gaps = 2/212 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS+KEIF TLQGEGG AG AVFCRF+GCNLW+GREQDR A C+FCDTDFVG GT Sbjct: 1 MTYSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWTGREQDRPKAICQFCDTDFVGTDGTL 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ D+LA+ I QW + R VLTGGEPLLQVD LI AL+ RGF I+VE+NG Sbjct: 61 GGKFATADELAERILGQWPADDSRHRMVVLTGGEPLLQVDQALIAALHVRGFRISVESNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG-FDFERFSLQPMDGP 179 T+ P+GIDW+C+SPKAG D + GQELKLV+PQ +F+ + LQPMD Sbjct: 121 TVAAPEGIDWLCISPKAGADWIQRSGQELKLVWPQPTFDLAAIEASTEFQHYFLQPMDNA 180 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 N I+ C Q P WRLS+QTHK GIR Sbjct: 181 QQSSNIAACIAQCMQRPGWRLSLQTHKLTGIR 212 >gi|239817064|ref|YP_002945974.1| hypothetical protein Vapar_4095 [Variovorax paradoxus S110] gi|239803641|gb|ACS20708.1| conserved hypothetical protein [Variovorax paradoxus S110] Length = 212 Score = 304 bits (780), Expect = 4e-81, Method: Composition-based stats. Identities = 124/212 (58%), Positives = 147/212 (69%), Gaps = 2/212 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS+KEIF TLQGEGG AG AVFCRF+GCNLW+GRE+DR +A CRFCDTDFVG GT Sbjct: 1 MTYSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWTGREEDRATAVCRFCDTDFVGTDGTL 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ N + LAD I QW + E R VLTGGEPLLQVD L+ AL+ R F IAVE+NG Sbjct: 61 GGKFKNAELLADTIAAQWPAEDAEHRLVVLTGGEPLLQVDAALVDALHARRFRIAVESNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-DFERFSLQPMDGP 179 T+ P+GIDW+C+SPKAG + GQELKLV+ Q + +F LQPMDGP Sbjct: 121 TVAAPEGIDWLCISPKAGAPWVQQRGQELKLVWRQTEFDLDTMARTGEFTHRFLQPMDGP 180 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT L I+ C ++P WRLSVQTHK GIR Sbjct: 181 DRVANTELCIAECMRHPAWRLSVQTHKITGIR 212 >gi|326795520|ref|YP_004313340.1| radical SAM protein [Marinomonas mediterranea MMB-1] gi|326546284|gb|ADZ91504.1| Radical SAM domain protein [Marinomonas mediterranea MMB-1] Length = 216 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 114/216 (52%), Positives = 147/216 (68%), Gaps = 9/216 (4%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y++KE F +LQGEG HAGR A+FCRF+GCNLWSG+E+ RLSA C+FCDTDF G+ G G Sbjct: 1 MYNVKESFYSLQGEGAHAGRPAIFCRFTGCNLWSGKEKHRLSADCQFCDTDFNGVNGQNG 60 Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 GR+ + D+LA I QW G +Y V TGGEP LQ+D LI A+ GF +A+ETNGT Sbjct: 61 GRFKSADELAKHIANQWPQG-HGNKYVVFTGGEPALQLDQALISAVKSYGFMVAIETNGT 119 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD---- 177 + P IDWICVSPK L + G ELK V+PQ N++P++Y G +FE F LQPMD Sbjct: 120 LRLPDNIDWICVSPKTTDPLVVNAGNELKFVYPQTNLNPKDYEGLEFEHFYLQPMDLSAV 179 Query: 178 --GPFLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210 + +T A + YC +NP WR+S+QTHK + I Sbjct: 180 PKQNIIASDTQSATLKYCLENPLWRISLQTHKMLNI 215 >gi|87308581|ref|ZP_01090721.1| hypothetical protein DSM3645_14515 [Blastopirellula marina DSM 3645] gi|87288673|gb|EAQ80567.1| hypothetical protein DSM3645_14515 [Blastopirellula marina DSM 3645] Length = 211 Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats. Identities = 120/211 (56%), Positives = 146/211 (69%), Gaps = 2/211 (0%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK Y +KEI+ TLQGEG +GR AVFCRF+GCNLWSGREQDR SA C+FCDT FVG G Sbjct: 1 MK-YFVKEIYYTLQGEGAKSGRPAVFCRFTGCNLWSGREQDRASAICQFCDTQFVGTDGP 59 Query: 61 KGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GG + + +LA + +W + V TGGEPLLQ+D +I+AL+ GFE+AVETN Sbjct: 60 GGGVFRSALELAGAVAAKWPESWNANKMVVCTGGEPLLQLDEAVIEALHDEGFEVAVETN 119 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 GT PP GIDWI VSPKA + ++ G ELKLVFPQ P Y DF+ F LQPMDG Sbjct: 120 GTKIPPPGIDWISVSPKANAECILRAGDELKLVFPQPGGEPTKYENLDFDHFFLQPMDGL 179 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E+NT LA YC ++P+W LS+QTHK IG+ Sbjct: 180 SREQNTQLAAQYCLKHPQWELSIQTHKLIGL 210 >gi|163856911|ref|YP_001631210.1| hypothetical protein Bpet2600 [Bordetella petrii DSM 12804] gi|163260639|emb|CAP42941.1| conserved hypothetical protein [Bordetella petrii] Length = 391 Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 119/209 (56%), Positives = 139/209 (66%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS KEIF TLQGEG AGR AVFCRF+GCNLWSGRE DR A C FCDTDFVG G Sbjct: 182 MTYSTKEIFKTLQGEGAQAGRAAVFCRFAGCNLWSGREADRAGAVCTFCDTDFVGTDGPG 241 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 GG++ + RY V TGGEPLLQ+D L+QA++ GF +A+ETNGT Sbjct: 242 GGKFASAAQLADAIAAAWGPGTQDRYVVFTGGEPLLQLDAALLQAVHGHGFTVAIETNGT 301 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + P GIDWICVSPK + I+ G ELKLV+PQ PE Y DF+ F LQPMDGP Sbjct: 302 LPAPAGIDWICVSPKGSARVVIERGHELKLVYPQAEARPEAYAHLDFQHFFLQPMDGPAR 361 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A+ YC Q+P+WRLS+QTHK+IGI Sbjct: 362 AANTQQAVQYCMQHPQWRLSLQTHKYIGI 390 >gi|329113419|ref|ZP_08242200.1| 7-carboxy-7-deazaguanine synthase-like protein [Acetobacter pomorum DM001] gi|326697244|gb|EGE48904.1| 7-carboxy-7-deazaguanine synthase-like protein [Acetobacter pomorum DM001] Length = 216 Score = 301 bits (773), Expect = 3e-80, Method: Composition-based stats. Identities = 124/215 (57%), Positives = 148/215 (68%), Gaps = 6/215 (2%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS+KEIFLTLQGEGG AGR AVFCRF+GCNLWSGRE+DR +A C+FCDTDF+G G Sbjct: 1 MTYSVKEIFLTLQGEGGQAGRAAVFCRFTGCNLWSGREEDRATATCQFCDTDFIGTDGIN 60 Query: 62 GGRY-NVDQLADLIEEQWI-----TGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115 GG++ N LA I W + V TGGEPLLQ+D LI A++ +GF IA Sbjct: 61 GGKFENAADLAATIASFWPQPTQDVKATGQKLVVFTGGEPLLQLDTALINAMHAQGFTIA 120 Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175 VE+NGTI P+GIDW+C+SPKAG +L K G ELKLVFPQ + P + DF+ F LQP Sbjct: 121 VESNGTIAAPKGIDWLCISPKAGAELVQKAGTELKLVFPQPGIDPASVENLDFQHFWLQP 180 Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 MDGP NT AI YC ++P W LS+QTHK IGI Sbjct: 181 MDGPQQAANTQAAIEYCLEHPLWGLSLQTHKLIGI 215 >gi|226228044|ref|YP_002762150.1| hypothetical protein GAU_2638 [Gemmatimonas aurantiaca T-27] gi|226091235|dbj|BAH39680.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 212 Score = 301 bits (772), Expect = 4e-80, Method: Composition-based stats. Identities = 117/210 (55%), Positives = 138/210 (65%), Gaps = 2/210 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE F TLQGEG +AGR AVFCRFSGCNLW+GRE DR A C FCDTDFVG+ G Sbjct: 3 YTVKECFYTLQGEGVNAGRAAVFCRFSGCNLWTGREADRHKATCTFCDTDFVGVGPDGGK 62 Query: 64 RYNVDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 LA ++ +W + V TGGEPLLQ+D I AL+ GFEIAVETNGT Sbjct: 63 FATAAALAAFVKSRWPVDAPGSARPFVVCTGGEPLLQLDEAAIDALHAEGFEIAVETNGT 122 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 P G+DWICVSPKA + + G ELKLVFPQ PE + +F F LQPMD P Sbjct: 123 QPAPAGLDWICVSPKADAPVVLTRGDELKLVFPQEQARPERFASLEFAHFLLQPMDDPQA 182 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 ENT A++YC +P+WRLSVQTHK +GIR Sbjct: 183 AENTRAALAYCLAHPQWRLSVQTHKVLGIR 212 >gi|258542252|ref|YP_003187685.1| hypothetical protein APA01_11580 [Acetobacter pasteurianus IFO 3283-01] gi|256633330|dbj|BAH99305.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01] gi|256636389|dbj|BAI02358.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03] gi|256639442|dbj|BAI05404.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07] gi|256642498|dbj|BAI08453.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22] gi|256645553|dbj|BAI11501.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26] gi|256648606|dbj|BAI14547.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32] gi|256651659|dbj|BAI17593.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654650|dbj|BAI20577.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12] Length = 216 Score = 301 bits (772), Expect = 4e-80, Method: Composition-based stats. Identities = 124/215 (57%), Positives = 146/215 (67%), Gaps = 6/215 (2%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS+KEIFLTLQGEGG AGR AVFCRF+GCNLWSGRE DR A C+FCDTDF+G G Sbjct: 1 MTYSVKEIFLTLQGEGGQAGRAAVFCRFTGCNLWSGREADRDKAICQFCDTDFIGTDGIN 60 Query: 62 GGRY-NVDQLADLIEEQWI-----TGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115 GG++ N +LA I W T + V TGGEPLLQ+D LI A++ +GF IA Sbjct: 61 GGKFENAAELAATIASFWPQPTEDTKATGQKLVVFTGGEPLLQLDTALIDAMHAQGFSIA 120 Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175 VE+NGT+ P+GIDW+C+SPKAG +L K G ELKLVFPQ + P DF+ F LQP Sbjct: 121 VESNGTVMAPEGIDWLCISPKAGAELVQKAGTELKLVFPQPGIDPAALENLDFQHFWLQP 180 Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 MDGP NT AI YC +P W LS+QTHK IGI Sbjct: 181 MDGPQQAVNTQAAIEYCLAHPLWGLSLQTHKLIGI 215 >gi|188580423|ref|YP_001923868.1| radical SAM domain protein [Methylobacterium populi BJ001] gi|179343921|gb|ACB79333.1| Radical SAM domain protein [Methylobacterium populi BJ001] Length = 210 Score = 300 bits (770), Expect = 6e-80, Method: Composition-based stats. Identities = 121/207 (58%), Positives = 142/207 (68%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE+F TLQGEG AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDF+G+ G GG Sbjct: 3 YAVKELFHTLQGEGAQAGRAAVFCRFAGCNLWSGREEDRAEAACRFCDTDFIGMDGEGGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R++ + G K RY V TGGEPLLQ+D LI A++ RGFE+AVETNGT+ Sbjct: 63 RFSDAEALAEAIAATWGGGKANRYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGTLP 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 P GIDWICVSPKAG L G ELKLVFPQ PE + F LQPMDGP Sbjct: 123 APPGIDWICVSPKAGNPLAQTSGDELKLVFPQAEALPERFADLPFRHHFLQPMDGPEAAA 182 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A++YC + +WRLS+QTHK IGI Sbjct: 183 NTAAAVAYCRSDARWRLSLQTHKIIGI 209 >gi|46203559|ref|ZP_00209018.1| COG0602: Organic radical activating enzymes [Magnetospirillum magnetotacticum MS-1] Length = 229 Score = 300 bits (769), Expect = 8e-80, Method: Composition-based stats. Identities = 120/207 (57%), Positives = 141/207 (68%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE+F TLQGEG AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG+ G GG Sbjct: 22 YAVKELFHTLQGEGAQAGRAAVFCRFAGCNLWSGREEDRAGAACRFCDTDFVGLDGEGGG 81 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R+ + G RY V TGGEPLLQ+D LI A++ RGFE+AVETNGT+ Sbjct: 82 RFASAEALAGAIAATWAGGAAHRYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGTLA 141 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 P GIDWICVSPKAG L G ELKLV+PQ +PE + F LQPMDGP Sbjct: 142 APPGIDWICVSPKAGNALIQTSGDELKLVYPQAEAAPELFADLPFRHRFLQPMDGPEAAA 201 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT A++YC + +WRLS+QTHK IGI Sbjct: 202 NTAAAVAYCRADARWRLSLQTHKIIGI 228 >gi|311696706|gb|ADP99579.1| organic radical activating enzyme [marine bacterium HP15] Length = 218 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 113/218 (51%), Positives = 141/218 (64%), Gaps = 11/218 (5%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y +KE F TLQGEG AGR AVFCRFS CNLW+GRE+DR +A C FCDTDFVG G G Sbjct: 1 MYRVKEAFYTLQGEGAQAGRAAVFCRFSKCNLWTGREKDRATAVCNFCDTDFVGTDGQNG 60 Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 GR+ ++LA I W Y V TGGEPLLQ+D PLI+AL++ GFE+ VETNGT Sbjct: 61 GRFETPEELARHIRNLWPEA-PGKPYVVCTGGEPLLQLDAPLIEALHREGFEVGVETNGT 119 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + P+GIDW+CVSPKA + ++ ELKLV+PQ PE ++G + L PM P + Sbjct: 120 LPAPEGIDWLCVSPKADAPVVLEACDELKLVYPQPLAMPERFLGIRASHYFLSPMASPSI 179 Query: 182 EE---------NTNLAISYCFQNPKWRLSVQTHKFIGI 210 E NT A YC +P+WRL++Q HK IGI Sbjct: 180 PETAVDEIKQSNTRRATDYCLAHPQWRLTLQMHKIIGI 217 >gi|307545033|ref|YP_003897512.1| hypothetical protein HELO_2443 [Halomonas elongata DSM 2581] gi|307217057|emb|CBV42327.1| hypothetical protein HELO_2443 [Halomonas elongata DSM 2581] Length = 214 Score = 299 bits (767), Expect = 1e-79, Method: Composition-based stats. Identities = 116/213 (54%), Positives = 140/213 (65%), Gaps = 5/213 (2%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +YS+KE F +LQGEGG AGR +VFCRF+GCNLWSGRE DR+SA CRFCDTDF G G G Sbjct: 1 MYSVKEAFYSLQGEGGQAGRASVFCRFAGCNLWSGREADRVSAACRFCDTDFRGTDGQNG 60 Query: 63 GRY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GR+ + + LA+ + W R + TGGEPLLQ+D LI A++ R F++AVETNG Sbjct: 61 GRFADAETLAEHLVGLWEGAPDGSRPQVIFTGGEPLLQLDDALIAAMHDREFDVAVETNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T+ P GIDW+CVSPK L G ELKLV PQ PE + G DF F LQPMD Sbjct: 121 TLAAPAGIDWLCVSPKGDVPLVQTRGDELKLVHPQPEAPPERFTGLDFRHFFLQPMDTSP 180 Query: 181 LEE---NTNLAISYCFQNPKWRLSVQTHKFIGI 210 L E ++YC NP+WRLS+QTHK GI Sbjct: 181 LGETRDTMAATVAYCLANPRWRLSLQTHKIAGI 213 >gi|83309346|ref|YP_419610.1| organic radical activating protein [Magnetospirillum magneticum AMB-1] gi|82944187|dbj|BAE49051.1| Organic radical activating enzyme [Magnetospirillum magneticum AMB-1] Length = 202 Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 116/208 (55%), Positives = 146/208 (70%), Gaps = 10/208 (4%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y+++EIF +LQGEG AGR AVF RF+GCNLWSGRE DR +A CRFCDTDFVG G Sbjct: 3 YTVREIFHSLQGEGVQAGRPAVFLRFAGCNLWSGREADRETATCRFCDTDFVG-----GE 57 Query: 64 RYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +Y Q LA+ ++ RY V+TGGEP LQ+D L++AL+ GFE+A+ETNGT+ Sbjct: 58 KYPDAQGLAEAVKAVGGA----TRYVVVTGGEPGLQLDGALVEALHGLGFEVAIETNGTV 113 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 E P G+DW+CVSPKAG LK+ G ELKLVFPQ P ++ DF F LQPMDGP + Sbjct: 114 ELPSGLDWVCVSPKAGTTLKVTRGDELKLVFPQAGAMPGDFEHLDFAYFLLQPMDGPERD 173 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +T AI +C +P+WRLS+QTHK +GI Sbjct: 174 AHTRAAIGHCLTHPRWRLSLQTHKIVGI 201 >gi|145589599|ref|YP_001156196.1| radical SAM domain-containing protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048005|gb|ABP34632.1| Radical SAM domain protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 217 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 119/217 (54%), Positives = 154/217 (70%), Gaps = 8/217 (3%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y++KEIF TLQGEG HAGR AVFCRF+GCNLWSGRE+DR +A C+FCDTDFVG G G Sbjct: 1 MYTVKEIFPTLQGEGAHAGRAAVFCRFAGCNLWSGREEDRATAICQFCDTDFVGSDGLGG 60 Query: 63 GRY-NVDQLADLIEEQW--ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 G++ + LA+ IE W + + RY V TGGEPLLQ+D LI+ L+K+GFE+A+ETN Sbjct: 61 GKFETANDLANAIELAWKSTSAGPQQRYVVFTGGEPLLQLDEVLIEVLHKKGFEVAIETN 120 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-----VNVSPENYIGFDFERFSLQ 174 GT++ P+G+DW+CVSPKAG +L + E+KLV PQ + + D+ LQ Sbjct: 121 GTLKVPKGVDWVCVSPKAGAELIVLQANEMKLVVPQNGHESLEQLMGRFEKMDYRNRFLQ 180 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 PMDGP L+ NT LA+ C + P WRLS+Q+HK IGIR Sbjct: 181 PMDGPNLKSNTELAVGLCQKRPLWRLSIQSHKLIGIR 217 >gi|126665591|ref|ZP_01736573.1| Organic radical activating enzyme [Marinobacter sp. ELB17] gi|126630219|gb|EBA00835.1| Organic radical activating enzyme [Marinobacter sp. ELB17] Length = 218 Score = 298 bits (765), Expect = 2e-79, Method: Composition-based stats. Identities = 115/218 (52%), Positives = 138/218 (63%), Gaps = 11/218 (5%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y +KE F TLQGEG AGR AVFCRFS CNLW+GRE+DR +A C FCDTDFVG G G Sbjct: 1 MYRVKEAFYTLQGEGAQAGRAAVFCRFSKCNLWTGREKDRATAVCDFCDTDFVGTDGQNG 60 Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 G + + LA I W Y V TGGEPLLQ+D PLI AL++ GFEI VETNGT Sbjct: 61 GVFATPEALAAHIAGLWPVA-PGKPYVVCTGGEPLLQLDSPLINALHQAGFEIGVETNGT 119 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + P GIDW+CVSPKA + I+ ELKLV+PQ+ PE ++ + F L PM P + Sbjct: 120 LPAPAGIDWLCVSPKADAPVVIERCNELKLVYPQLKAMPERFLHIQADHFFLSPMASPSV 179 Query: 182 EE---------NTNLAISYCFQNPKWRLSVQTHKFIGI 210 E NT A YC NP+WRL++Q HK IGI Sbjct: 180 PETSTDVIKQSNTRRATDYCLANPRWRLTLQMHKIIGI 217 >gi|307293826|ref|ZP_07573670.1| Radical SAM domain protein [Sphingobium chlorophenolicum L-1] gi|306879977|gb|EFN11194.1| Radical SAM domain protein [Sphingobium chlorophenolicum L-1] Length = 215 Score = 298 bits (764), Expect = 3e-79, Method: Composition-based stats. Identities = 113/214 (52%), Positives = 148/214 (69%), Gaps = 7/214 (3%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE+FLTLQGEG HAGR AVF RF+GCNLWSGREQDR +A C+FCDTDFVG G GG Sbjct: 3 YAVKELFLTLQGEGVHAGRRAVFLRFAGCNLWSGREQDRATAICQFCDTDFVGTDGDGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + D LA+ W G EGRY VLTGGEP+LQ+D L+ AL+ RGF IAVE+NGT+ Sbjct: 63 KFADADSLAEAALALWGEGA-EGRYIVLTGGEPMLQIDDALVDALHARGFAIAVESNGTL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----VSPENYIGFDFERFSLQPMD 177 G+DW+C+SPKAG ++ + G ELKLV+PQ E+ G+ F+ +QP+D Sbjct: 122 PAHPGLDWVCISPKAGSEVVQRSGNELKLVWPQPGQGHGIADVEDMEGWAFDHLLVQPLD 181 Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 P N A+ P+WRLS+Q+HK++G+R Sbjct: 182 DPDAARNAQAAVDLVLARPRWRLSLQSHKYLGLR 215 >gi|332188914|ref|ZP_08390617.1| hypothetical protein SUS17_4029 [Sphingomonas sp. S17] gi|332011054|gb|EGI53156.1| hypothetical protein SUS17_4029 [Sphingomonas sp. S17] Length = 210 Score = 298 bits (763), Expect = 4e-79, Method: Composition-based stats. Identities = 112/208 (53%), Positives = 143/208 (68%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE+FLTLQGEG AGR AVF RF+GCNLWSGREQDR SA CRFCDTDFVG+ G GG Sbjct: 3 YAVKEMFLTLQGEGVQAGRRAVFVRFAGCNLWSGREQDRASAICRFCDTDFVGVDGLGGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R+ E + E+ R+ VLTGGEP+LQVD L+ AL+ GF IA+E+NGTI Sbjct: 63 RFADAGALVAAVEGFWGPERAERFVVLTGGEPMLQVDDALVDALHDAGFFIAIESNGTIA 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 +DW+C+SPKAG ++ + GQELKLV+PQ + P G+DF LQP+D P E Sbjct: 123 AHPRLDWVCISPKAGSEVVQRSGQELKLVWPQAGIDPAEVEGWDFANHLLQPLDDPRAEA 182 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGIR 211 N I+ + P+WRL++QTHK +G+R Sbjct: 183 NREACIAMVMERPRWRLTLQTHKMLGLR 210 >gi|152968324|ref|YP_001364108.1| hypothetical protein Krad_4381 [Kineococcus radiotolerans SRS30216] gi|151362841|gb|ABS05844.1| conserved hypothetical protein [Kineococcus radiotolerans SRS30216] Length = 237 Score = 297 bits (762), Expect = 5e-79, Method: Composition-based stats. Identities = 118/236 (50%), Positives = 143/236 (60%), Gaps = 27/236 (11%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y +KEIF TLQGEG HAGR AVFCRFS CNLW+GRE+DR A C FCDTDFVG G Sbjct: 1 MTYLLKEIFYTLQGEGTHAGRPAVFCRFSRCNLWTGREKDRARAICTFCDTDFVGTDGVG 60 Query: 62 GGRYNVDQL---------------------ADLIEEQWITGEKEGRY------CVLTGGE 94 GGR+ + + E + + V TGGE Sbjct: 61 GGRFATADDLAAAVDASWPAAGLTDDFTDGSAITAESDSSAHSHAPHGAQRKFVVCTGGE 120 Query: 95 PLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154 PLLQ+D +QAL++RGFE+AVETNGT PP GIDW+CVSPK G DL + G ELKLV+P Sbjct: 121 PLLQLDDAAVQALHQRGFEVAVETNGTRTPPPGIDWLCVSPKIGADLVVSRGDELKLVYP 180 Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 Q P + DF F LQPMDGP ++ +T AI YC +P+W LS+QTHK++GI Sbjct: 181 QAGGDPAQFAELDFTSFRLQPMDGPDVQAHTRAAIDYCLTHPQWSLSMQTHKYLGI 236 >gi|120553050|ref|YP_957401.1| organic radical activating enzyme [Marinobacter aquaeolei VT8] gi|120322899|gb|ABM17214.1| organic radical activating enzyme [Marinobacter aquaeolei VT8] Length = 218 Score = 297 bits (762), Expect = 6e-79, Method: Composition-based stats. Identities = 111/218 (50%), Positives = 138/218 (63%), Gaps = 11/218 (5%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y +KE F TLQGEG AGR AVFCRFS CNLW+GRE+DR +A C FCDTDFVG G G Sbjct: 1 MYRVKEAFYTLQGEGAQAGRAAVFCRFSKCNLWTGREKDRANAVCNFCDTDFVGTDGQNG 60 Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 GR+ + LA I W Y V TGGEPLLQ+D PLI+A ++ GFE+ VETNGT Sbjct: 61 GRFDTPEALAAHIRSLWPDAPGRP-YVVCTGGEPLLQLDEPLIRAFHRAGFEVGVETNGT 119 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + P+GIDW+CVSPKA ++ I ELKLV+PQ PE ++ + L PM P + Sbjct: 120 LPAPEGIDWLCVSPKADAEVVIAECDELKLVYPQPLAPPERFLHIRARHYFLSPMASPSV 179 Query: 182 EE---------NTNLAISYCFQNPKWRLSVQTHKFIGI 210 E NT A YC +P+WRL++Q HK +GI Sbjct: 180 PEGGPDAIKQSNTRKATDYCLAHPQWRLTLQMHKILGI 217 >gi|329851462|ref|ZP_08266219.1| hypothetical protein ABI_43030 [Asticcacaulis biprosthecum C19] gi|328840308|gb|EGF89880.1| hypothetical protein ABI_43030 [Asticcacaulis biprosthecum C19] Length = 210 Score = 296 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 120/210 (57%), Positives = 144/210 (68%), Gaps = 1/210 (0%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +YS KEIFLTLQGEGG AGRV VF RF+GCNLWSGREQDR +A C FCDTDFVG G G Sbjct: 1 MYSFKEIFLTLQGEGGQAGRVNVFARFAGCNLWSGREQDRATAACDFCDTDFVGTDGENG 60 Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 GR+ + ++ W G G+ V TGGEPLLQ+D LI A+ G+ IAVETNGT Sbjct: 61 GRFPTPADVVAALDAVWGEGRAAGKAVVFTGGEPLLQLDSDLIAAVKAAGYFIAVETNGT 120 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 ++ P GIDW+CVSPK L GQELKLV+PQ NV P +++ FERF LQP D P Sbjct: 121 LKAPAGIDWVCVSPKGQNRLHQTSGQELKLVWPQENVDPSDFLEMQFERFYLQPKDNPRQ 180 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT I YC +P+WR+SVQTHK +G++ Sbjct: 181 AANTQAVIDYCLLHPQWRMSVQTHKLVGLK 210 >gi|114798300|ref|YP_759262.1| hypothetical protein HNE_0532 [Hyphomonas neptunium ATCC 15444] gi|114738474|gb|ABI76599.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444] Length = 215 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 119/214 (55%), Positives = 137/214 (64%), Gaps = 5/214 (2%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS+KE F TLQGEG H GR AVF RF+GCNLWSG E+DR A CRFCDTDFVG G Sbjct: 1 MTYSVKEAFYTLQGEGAHTGRAAVFLRFAGCNLWSGLERDREKAVCRFCDTDFVGTNGEG 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 GG++ LA IE W G Y V TGGEPL+Q+D PLI AL++ GFEIA+ET Sbjct: 61 GGKFREPGLLAAHIESIWQANASPGGRPYVVCTGGEPLMQLDEPLIGALHEAGFEIAIET 120 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFSLQPM 176 NGT+ P IDWICVSPKA L K G ELKLV+PQ PE + DFE F LQP Sbjct: 121 NGTLPAPASIDWICVSPKANAPLAQKSGNELKLVYPQTEPEAQPECFETLDFEHFFLQPR 180 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 D + +YC +NPKWRLS+QTHK G+ Sbjct: 181 DDGPSVSHVAAVANYCLKNPKWRLSLQTHKLTGL 214 >gi|294013047|ref|YP_003546507.1| putative organic radical activating enzyme [Sphingobium japonicum UT26S] gi|292676377|dbj|BAI97895.1| putative organic radical activating enzyme [Sphingobium japonicum UT26S] Length = 215 Score = 295 bits (755), Expect = 4e-78, Method: Composition-based stats. Identities = 109/213 (51%), Positives = 145/213 (68%), Gaps = 5/213 (2%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE+FLTLQGEG HAGR AVF RF+GCNLW+GREQDR SA CRFCDTDFVG G GG Sbjct: 3 YAVKEMFLTLQGEGVHAGRRAVFLRFAGCNLWTGREQDRASAVCRFCDTDFVGTDGDGGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R+ ++GRY VLTGGEP+LQVD L+ AL+ RGF IA+E+NGT+ Sbjct: 63 RFADADGLADAALALWGEGRDGRYIVLTGGEPMLQVDDALVDALHARGFAIAIESNGTLP 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----VSPENYIGFDFERFSLQPMDG 178 G+DW+C+SPKAG ++ + G ELKLV+PQ E+ G+ F+ + +QP+D Sbjct: 123 AHPGLDWVCISPKAGSEVVQRSGNELKLVWPQPGQGHSLADVEDMEGWAFDHWLVQPLDD 182 Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 P +N A+ + P+WRLS+Q+HK++G+R Sbjct: 183 PKAADNARAAVELVMERPRWRLSLQSHKYLGLR 215 >gi|88800853|ref|ZP_01116408.1| Organic radical activating enzyme [Reinekea sp. MED297] gi|88776426|gb|EAR07646.1| Organic radical activating enzyme [Reinekea sp. MED297] Length = 217 Score = 294 bits (754), Expect = 4e-78, Method: Composition-based stats. Identities = 105/217 (48%), Positives = 140/217 (64%), Gaps = 9/217 (4%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS+KE+F TLQGEG H GR AVFCRFSGCNLW+GRE+DR ++ CRFCDTDFVG G Sbjct: 1 MTYSVKEMFYTLQGEGFHTGRPAVFCRFSGCNLWNGREKDRATSICRFCDTDFVGTDGQN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ +LA I + W ++ R+ V TGGEP LQ+D LI AL+ GFE AVE+NG Sbjct: 61 GGKFREARELAQRIADFWP-ADQAHRFVVFTGGEPALQLDETLIAALHDVGFECAVESNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD--- 177 T+ P +DW+C+SPK ++ I+ ELKLVFPQ + PE + + L P++ Sbjct: 120 TLPLPPSLDWVCISPKGSAEVVIEACDELKLVFPQADAQPERFSHIHAQHRFLSPLNDWT 179 Query: 178 ----GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P NT + YC ++P+WRL++QTHK + I Sbjct: 180 QAQLSPAQNNNTQACVQYCLEHPQWRLTLQTHKVLNI 216 >gi|149377359|ref|ZP_01895104.1| Organic radical activating enzyme [Marinobacter algicola DG893] gi|149358371|gb|EDM46848.1| Organic radical activating enzyme [Marinobacter algicola DG893] Length = 218 Score = 294 bits (754), Expect = 5e-78, Method: Composition-based stats. Identities = 108/218 (49%), Positives = 134/218 (61%), Gaps = 11/218 (5%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y +KE F TLQGEG AGR AVFCRFS CNLW+GRE+DR +A C FCDTDFVG G G Sbjct: 1 MYRVKEAFYTLQGEGAQAGRAAVFCRFSKCNLWTGREKDRANAVCSFCDTDFVGTDGQNG 60 Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 G++ D LA I W Y V TGGEPLLQ+D L+ A ++ GFE+ VETNGT Sbjct: 61 GQFETADALAAHIRRLWPDAPGRP-YVVCTGGEPLLQLDDQLVDAFHRAGFEVGVETNGT 119 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + P GIDW+CVSPKA + ++ ELK+V+PQ PE + + L PM P + Sbjct: 120 LPAPSGIDWLCVSPKADAPVVLRQCDELKVVYPQPLAMPERFTDIQASHYFLSPMASPTV 179 Query: 182 EE---------NTNLAISYCFQNPKWRLSVQTHKFIGI 210 E NT A YC +P+WRL++Q HK IGI Sbjct: 180 SEGEPDPIKQSNTRKATDYCLTHPRWRLTLQMHKIIGI 217 >gi|92114161|ref|YP_574089.1| hypothetical protein Csal_2039 [Chromohalobacter salexigens DSM 3043] gi|91797251|gb|ABE59390.1| conserved hypothetical protein [Chromohalobacter salexigens DSM 3043] Length = 215 Score = 294 bits (753), Expect = 6e-78, Method: Composition-based stats. Identities = 116/214 (54%), Positives = 144/214 (67%), Gaps = 6/214 (2%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +YS+KE F TLQGEG AGR +VFCRF+GCNLWSGRE+DR ++CRFCDTDFVG G G Sbjct: 1 MYSVKEAFYTLQGEGARAGRASVFCRFTGCNLWSGRERDRAQSRCRFCDTDFVGTDGQNG 60 Query: 63 GRY-NVDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GR+ + LA + W + Y V TGGEPLLQ+D LI A+ GFE+AVETN Sbjct: 61 GRFADAHALATHLHRLWPGTDDTAATPYVVFTGGEPLLQLDTALITAMRAHGFEVAVETN 120 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD-G 178 GT+ PP GIDW+CVSPK L+I G ELKLV+PQ + P N+ DF F LQPMD Sbjct: 121 GTLTPPDGIDWLCVSPKGDAPLRITQGDELKLVYPQDDAPPANFTHLDFAHFFLQPMDLA 180 Query: 179 PFLEENTNL--AISYCFQNPKWRLSVQTHKFIGI 210 P + T + ++YC +P+WRL++QTHK GI Sbjct: 181 PRGGQGTTMTDTVAYCLDHPQWRLALQTHKIAGI 214 >gi|241761735|ref|ZP_04759822.1| organic radical activating enzymes-like protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374043|gb|EER63576.1| organic radical activating enzymes-like protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 217 Score = 293 bits (751), Expect = 9e-78, Method: Composition-based stats. Identities = 111/215 (51%), Positives = 144/215 (66%), Gaps = 5/215 (2%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + Y++KE FLTLQGEG AGR AVF RF+GCNLW+GRE DR A CRFCDTDFVGI G Sbjct: 3 RHYAVKESFLTLQGEGIQAGRRAVFIRFAGCNLWNGREDDREQATCRFCDTDFVGIDGEN 62 Query: 62 GGRYNVDQLADLIEEQWITG-----EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 GGR+ ++LA+ W + + VLTGGEPLLQVD L+ AL + FEIA+ Sbjct: 63 GGRFTAEELAEQAIRLWKEALESRYQYVRPFVVLTGGEPLLQVDEALLLALKNQAFEIAI 122 Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176 ETNGT P IDW+C+SPKAG + ++ G E+KLV+PQ + E DF+ + +QPM Sbjct: 123 ETNGTQPVPSAIDWVCMSPKAGSQIILEKGNEIKLVWPQKGIDIEALEKLDFDHYLIQPM 182 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 D + +EN AI++ Q P WRLS+Q+HK IG++ Sbjct: 183 DDEYQKENIQKAIAFVMQRPLWRLSIQSHKLIGVK 217 >gi|317486302|ref|ZP_07945134.1| radical SAM domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316922472|gb|EFV43726.1| radical SAM domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 218 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 109/213 (51%), Positives = 135/213 (63%), Gaps = 7/213 (3%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y +KEIF TLQGEG AGR AVFCRFSGCNLWSGR +DR +A+CRFCDTDFVG G Sbjct: 8 YRVKEIFYTLQGEGAQAGRPAVFCRFSGCNLWSGRPEDRATAKCRFCDTDFVGADA--GV 65 Query: 64 RYNVDQLADLIEEQWITGEKEG-----RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 ++LA I + + Y V TGGEP LQ+ LI L+ GFE+ VE+ Sbjct: 66 FATAEELAQTIAATFPVLAPQAYGGRKPYIVFTGGEPALQLTRELIDRLHALGFELGVES 125 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178 NGT+ P+G+DWI VSPK L G ELKLV+PQ SPE++ DF F LQP D Sbjct: 126 NGTLPLPEGLDWITVSPKGSNPLATTSGHELKLVWPQQGCSPEDFEDLDFRHFLLQPCDD 185 Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 P + NT I+YC +P+W L +QTHK++G+R Sbjct: 186 PRNKANTRECIAYCLLHPRWSLGLQTHKWVGVR 218 >gi|149926775|ref|ZP_01915035.1| hypothetical protein LMED105_08825 [Limnobacter sp. MED105] gi|149824704|gb|EDM83920.1| hypothetical protein LMED105_08825 [Limnobacter sp. MED105] Length = 216 Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats. Identities = 109/214 (50%), Positives = 139/214 (64%), Gaps = 5/214 (2%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y++KE+F TLQGEG AGR AVFCRF+GCNLW+GRE+DR +A C+FCDTDFVG G Sbjct: 1 MATYTVKEMFYTLQGEGAQAGRAAVFCRFAGCNLWTGREEDRATAVCKFCDTDFVGTDGV 60 Query: 61 KGGRY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 GG++ + LA I + + G + Y V TGGEP LQ+D LI A++ +GFEIA+ET Sbjct: 61 GGGKFKDAVALAQAIADTYQGGLGTAKPYVVFTGGEPTLQLDSALIDAVHAQGFEIAIET 120 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178 NGT+ P+G+DWICVSPK G +L G ELK+V PQ+ F+ + +Q MD Sbjct: 121 NGTLPVPEGVDWICVSPKFGSELVQTRGHELKVVVPQLGQDLNALGQLQFDHYFVQAMDD 180 Query: 179 PF---LEENTNLAISYCFQNPKWRLSVQTHKFIG 209 +N AI C P+WRLSVQTHK IG Sbjct: 181 TDPAKKAKNMQAAIQTCLNKPQWRLSVQTHKVIG 214 >gi|56552191|ref|YP_163030.1| organic radical activating-like protein [Zymomonas mobilis subsp. mobilis ZM4] gi|56543765|gb|AAV89919.1| organic radical activating-like protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 217 Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats. Identities = 111/215 (51%), Positives = 144/215 (66%), Gaps = 5/215 (2%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + Y++KE FLTLQGEG AGR AVF RF+GCNLW+GRE DR A CRFCDTDFVGI G Sbjct: 3 RHYAVKESFLTLQGEGIQAGRRAVFIRFAGCNLWNGREDDREQATCRFCDTDFVGIDGEN 62 Query: 62 GGRYNVDQLADLIEEQWITG-----EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 GGR+ ++LA+ W + + VLTGGEPLLQVD L+ AL + FEIA+ Sbjct: 63 GGRFTAEELAEQAIRLWKEAIESRYQSVRPFVVLTGGEPLLQVDEALLLALKNQAFEIAI 122 Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176 ETNGT P IDW+C+SPKAG + ++ G E+KLV+PQ + E DF+ + +QPM Sbjct: 123 ETNGTQPVPSAIDWVCMSPKAGSQIILEKGNEIKLVWPQKGIDIEALEKLDFDHYLIQPM 182 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 D + +EN AI++ Q P WRLS+Q+HK IG++ Sbjct: 183 DDEYQKENIQKAIAFVMQRPLWRLSIQSHKLIGVK 217 >gi|260752296|ref|YP_003225189.1| hypothetical protein Za10_0051 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551659|gb|ACV74605.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 217 Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats. Identities = 111/215 (51%), Positives = 144/215 (66%), Gaps = 5/215 (2%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + Y++KE FLTLQGEG AGR AVF RF+GCNLW+GRE DR A CRFCDTDFVGI G Sbjct: 3 RHYAVKESFLTLQGEGIQAGRRAVFIRFAGCNLWNGREDDREQATCRFCDTDFVGIDGEN 62 Query: 62 GGRYNVDQLADLIEEQWITG-----EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 GGR+ ++LA+ W + + VLTGGEPLLQVD L+ AL + FEIA+ Sbjct: 63 GGRFTAEELAEQAIRLWKEAIESRYQSVRPFVVLTGGEPLLQVDEALLLALKNQAFEIAI 122 Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176 ETNGT P IDW+C+SPKAG + ++ G E+KLV+PQ + E DF+ + +QPM Sbjct: 123 ETNGTQPAPSAIDWVCMSPKAGSQIILEKGNEIKLVWPQKGIDIEALEKLDFDHYLIQPM 182 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 D + +EN AI++ Q P WRLS+Q+HK IG++ Sbjct: 183 DDEYQKENIQKAIAFVMQRPLWRLSIQSHKLIGVK 217 >gi|241766442|ref|ZP_04764315.1| conserved hypothetical protein [Acidovorax delafieldii 2AN] gi|241363364|gb|EER58879.1| conserved hypothetical protein [Acidovorax delafieldii 2AN] Length = 211 Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats. Identities = 115/211 (54%), Positives = 134/211 (63%), Gaps = 1/211 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS+KEIF TLQGEGG AG AVFCRF+GCNLW+GREQDR A C+FCDTDFVG GT Sbjct: 1 MTYSVKEIFYTLQGEGGQAGTPAVFCRFAGCNLWTGREQDRAQAICQFCDTDFVGTDGTL 60 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 GG++ R VLTGGEPLLQVD LI AL+ + F IAVE+NGT Sbjct: 61 GGKFETAAALAQSIAAQWPAGAGHRLVVLTGGEPLLQVDSELIAALHAQQFRIAVESNGT 120 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-DFERFSLQPMDGPF 180 + P+GIDW+C+SPKAG + GQELKLV+PQ F LQPMDGP Sbjct: 121 VAAPEGIDWLCISPKAGAPFVQRSGQELKLVWPQPGFDLGALERETHFTHRFLQPMDGPL 180 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT I+ C +P WRLS+QTHK GIR Sbjct: 181 QRQNTAACIAACLAHPAWRLSLQTHKLTGIR 211 >gi|152996126|ref|YP_001340961.1| hypothetical protein Mmwyl1_2104 [Marinomonas sp. MWYL1] gi|150837050|gb|ABR71026.1| conserved hypothetical protein [Marinomonas sp. MWYL1] Length = 216 Score = 291 bits (745), Expect = 5e-77, Method: Composition-based stats. Identities = 108/216 (50%), Positives = 140/216 (64%), Gaps = 9/216 (4%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +YSIKE F +LQGEG HAGR A+FCRF+GCNLWSG E+ R +++C+FCDTDF+G G G Sbjct: 1 MYSIKEAFYSLQGEGAHAGRPALFCRFTGCNLWSGSEKTRATSECQFCDTDFIGTNGQHG 60 Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 G++ QL ++ W G+ +Y V TGGEP LQ+D +I + G+ IA+ETNGT Sbjct: 61 GKFKTAGQLRTHLDALWPVGQ-GHKYVVFTGGEPALQLDNAIISEMKLYGYTIAIETNGT 119 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 I P GIDWICVSPK L + G ELKLV+PQ ++SPE + DF F LQPMD L Sbjct: 120 IALPDGIDWICVSPKTNKPLVVNKGDELKLVYPQSHLSPELFEALDFTNFYLQPMDQSHL 179 Query: 182 E-------ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + YC +P+WRLS+QTHK + I Sbjct: 180 TAEQIPLLDTQQATLHYCLSHPRWRLSLQTHKMLNI 215 >gi|226940051|ref|YP_002795124.1| Organic radical activating enzyme [Laribacter hongkongensis HLHK9] gi|226714977|gb|ACO74115.1| Organic radical activating enzyme [Laribacter hongkongensis HLHK9] Length = 209 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 117/210 (55%), Positives = 137/210 (65%), Gaps = 1/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG H+GR AVFCRF+GCNLWSGRE DR A C+FCDTDFVG Sbjct: 1 MTYTVKEIFHTLQGEGVHSGRAAVFCRFTGCNLWSGRETDRAQATCQFCDTDFVGTGPDG 60 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 G +LA I + W G Y V TGGEPLLQ+D LI+A++ RGFE+ VETNGT Sbjct: 61 GKFACARELAGRIADSW-AGTGGTPYVVFTGGEPLLQLDEELIEAMHARGFEVGVETNGT 119 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 I P GIDW+CVSPKAG K G ELKLV+PQ + PE F R+ LQPMDGP Sbjct: 120 IPAPPGIDWLCVSPKAGSGWVQKQGDELKLVYPQPGLLPETVELTGFSRYWLQPMDGPEQ 179 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + AI +C +P W LS+Q HK GIR Sbjct: 180 TMHIKAAIGFCLLHPDWHLSLQNHKLAGIR 209 >gi|78485139|ref|YP_391064.1| hypothetical protein Tcr_0794 [Thiomicrospira crunogena XCL-2] gi|78363425|gb|ABB41390.1| conserved hypothetical protein [Thiomicrospira crunogena XCL-2] Length = 218 Score = 288 bits (737), Expect = 4e-76, Method: Composition-based stats. Identities = 109/215 (50%), Positives = 142/215 (66%), Gaps = 8/215 (3%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y IKE F +LQGEG H+GR A+FCRF+ CNLW+GRE DR +A C+FCDTDF+G G GG Sbjct: 3 YRIKEAFYSLQGEGFHSGRPAIFCRFTNCNLWTGREADRSNAVCQFCDTDFLGTDGQNGG 62 Query: 64 RY-NVDQLADLIEEQWITGEK----EGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 + + D LA + W T + + VLTGGEPLLQVD LI ++ GFEIAVET Sbjct: 63 SFKDADSLAKHLLALWPTDKNDQACPHPFVVLTGGEPLLQVDQTLIDVFHQHGFEIAVET 122 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178 NGT + P+ IDWICVSPKA L + G ELKLV+PQ + P+ +F+ F LQ MD Sbjct: 123 NGTQKAPKNIDWICVSPKANAPLILDSGDELKLVYPQTELRPKQVETLNFKHFYLQAMDD 182 Query: 179 PF---LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E+N ++YC ++P+W+LS+QTHK +G+ Sbjct: 183 ADPDIQEKNLKETLAYCLKHPQWKLSLQTHKILGV 217 >gi|326330124|ref|ZP_08196435.1| GntS [Nocardioidaceae bacterium Broad-1] gi|325951937|gb|EGD43966.1| GntS [Nocardioidaceae bacterium Broad-1] Length = 211 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 115/210 (54%), Positives = 139/210 (66%), Gaps = 1/210 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y +KEIF TLQGEG HAGR AVFCRF+ CNLW+GRE+DR A C+FCDT FVG G Sbjct: 1 MTYKVKEIFYTLQGEGTHAGRPAVFCRFTSCNLWTGREKDRDRAICKFCDTAFVGTDGEG 60 Query: 62 GGRYNVDQLADLIE-EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ +W G V TGGEPLLQ+D + A+ GF +AVETNG Sbjct: 61 GGKFADAAALAAAVASKWPMGTDGQPMVVCTGGEPLLQLDDAAVAAMKAAGFYVAVETNG 120 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 TI PP GIDW+CVSPK G DL ++ GQELK V PQ +V P + DFE F +QPMDGP Sbjct: 121 TILPPAGIDWLCVSPKIGSDLVVESGQELKFVVPQADVDPTTFEALDFESFRVQPMDGPD 180 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 L NT A+ +C ++P+W LS QTHKF+GI Sbjct: 181 LAANTEYAVKFCLEHPRWHLSTQTHKFLGI 210 >gi|87122356|ref|ZP_01078237.1| hypothetical protein MED121_00365 [Marinomonas sp. MED121] gi|86162331|gb|EAQ63615.1| hypothetical protein MED121_00365 [Marinomonas sp. MED121] Length = 216 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 105/215 (48%), Positives = 140/215 (65%), Gaps = 7/215 (3%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +YSIKE F +LQGEG AGR ++FCRFSGCNLW+G+E R + C+FCDTDF+G+ G G Sbjct: 1 MYSIKEAFYSLQGEGAQAGRPSIFCRFSGCNLWNGKETHRFDSLCQFCDTDFIGVDGQNG 60 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 G++ + L + ++ +Y V TGGEP LQ+D LI A+ + G+ I +ETNGT Sbjct: 61 GKFKQAKTLALHLDALWPNDQSDKYVVFTGGEPALQLDAALILAMKEMGYVIGIETNGTK 120 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDWICVSPK +L I+ G ELKLV+PQ +++P Y DF+ F LQPMD L Sbjct: 121 PLPDGIDWICVSPKTADELVIQQGHELKLVYPQSHLNPNKYTHLDFDTFYLQPMDQSHLP 180 Query: 183 EN-------TNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ ++YC NPKWRLS+QTHK + I Sbjct: 181 KDRISPESTLKQTLNYCLANPKWRLSLQTHKILEI 215 >gi|315499628|ref|YP_004088431.1| radical sam domain protein [Asticcacaulis excentricus CB 48] gi|315417640|gb|ADU14280.1| Radical SAM domain protein [Asticcacaulis excentricus CB 48] Length = 216 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 116/214 (54%), Positives = 140/214 (65%), Gaps = 6/214 (2%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 YS KEIFLTLQGEGG AGRVAVF RF+GCNLWSGREQDR +A C FCDTDFVG G GG Sbjct: 3 YSFKEIFLTLQGEGGQAGRVAVFARFAGCNLWSGREQDRATAACTFCDTDFVGTDGEGGG 62 Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + ++ W + + V TGGEPLLQ+D PLI A+ G+ IAVE+NGT+ Sbjct: 63 KFDTPEAAVAALDAHWGQIDPAHKSVVFTGGEPLLQLDAPLIAAVKSAGYFIAVESNGTL 122 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD----- 177 P GIDW+C+SPK L GQELKLV+PQ V P + DFERF LQP D Sbjct: 123 RAPIGIDWLCISPKGENRLHQTSGQELKLVWPQDRVDPAEFARMDFERFYLQPKDPLDQN 182 Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +T I YC +P+WR+SVQTHK +G+R Sbjct: 183 PAMRAAHTQAVIDYCLAHPQWRMSVQTHKVVGVR 216 >gi|218886225|ref|YP_002435546.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757179|gb|ACL08078.1| radical SAM domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 224 Score = 284 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 107/222 (48%), Positives = 133/222 (59%), Gaps = 14/222 (6%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y +KEIF +LQGEG HAGR AVFCRFSGCNLW+GREQDR A CRFCDTDF G G GG Sbjct: 3 YRVKEIFHSLQGEGVHAGRAAVFCRFSGCNLWTGREQDRPDAACRFCDTDFTGTDGPGGG 62 Query: 64 RYNVDQLADLIEEQW-------ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 + Q + G Y V TGGEP LQ+ L+ AL+ G + V Sbjct: 63 VFEDAQALAAAILAAFPYPLAPLDGGGWRPYVVFTGGEPALQLTPELLDALHAHGCQCGV 122 Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176 ETNGT+ P G+DW+ VSPKAG L + G ELKLV+PQ V P ++ G DF F LQP Sbjct: 123 ETNGTLPLPAGLDWVTVSPKAGTRLAVTRGDELKLVWPQDGVDPADFAGLDFGHFILQPR 182 Query: 177 D-------GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 D ++ + +C ++P+WRL +QTHK++GIR Sbjct: 183 DDAARGAGAQAGADHIAACVRHCLEHPRWRLGLQTHKYLGIR 224 >gi|120601647|ref|YP_966047.1| hypothetical protein Dvul_0597 [Desulfovibrio vulgaris DP4] gi|120561876|gb|ABM27620.1| conserved hypothetical protein [Desulfovibrio vulgaris DP4] Length = 216 Score = 283 bits (726), Expect = 9e-75, Method: Composition-based stats. Identities = 109/215 (50%), Positives = 135/215 (62%), Gaps = 6/215 (2%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y +KEIF TLQGEG AGR AVFCRFSGCNLW+GR QDR +A C FCDTDFVG G Sbjct: 1 MTYRVKEIFHTLQGEGMRAGRAAVFCRFSGCNLWTGRAQDRPAAVCPFCDTDFVGTDGPG 60 Query: 62 GGRYNVDQLADLIEEQ---WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 GG + + TGE Y V TGGEP LQ+D PLI L+ G E+A+ET Sbjct: 61 GGVFEDAATLAAAILAAFPYKTGEGYRPYVVFTGGEPALQLDRPLIDILHAHGCEVAIET 120 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178 NGT+ P+GIDW+ VSPKAG L + G ELKLV+PQ + PE+Y F +QP DG Sbjct: 121 NGTVRLPEGIDWVTVSPKAGTRLAVTSGDELKLVWPQQGICPESYESLAFTYLLMQPRDG 180 Query: 179 ---PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + A+ +C +P+WRL +QTHK++GI Sbjct: 181 LGDAGRGDAESEAVRWCLAHPRWRLCLQTHKYLGI 215 >gi|94495452|ref|ZP_01302032.1| hypothetical protein SKA58_05370 [Sphingomonas sp. SKA58] gi|94424840|gb|EAT09861.1| hypothetical protein SKA58_05370 [Sphingomonas sp. SKA58] Length = 215 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 111/213 (52%), Positives = 138/213 (64%), Gaps = 5/213 (2%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KE+FLTLQGEG AGR AVF RF+GCNLWSGREQDR SA CRFCDTDFVG G GG Sbjct: 3 YAVKEMFLTLQGEGVQAGRRAVFLRFAGCNLWSGREQDRASAVCRFCDTDFVGTDGLGGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 ++ + EGRY VLTGGEP+LQVD L+ AL+ RGF IA+E+NGT+ Sbjct: 63 KFADAEALADAALGLWGEGAEGRYIVLTGGEPMLQVDDALVDALHDRGFTIAIESNGTLA 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----VSPENYIGFDFERFSLQPMDG 178 GIDWICVSPKAG D+ + G ELKLV+PQ + + F +QP+D Sbjct: 123 AHPGIDWICVSPKAGSDVVQRSGHELKLVWPQPGGGHSLADVDAMARWAFAHHLIQPLDD 182 Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +N AI+ P+WRL+VQ HK++G+R Sbjct: 183 AHAPDNARAAIALVMDRPQWRLTVQAHKYLGLR 215 >gi|46581062|ref|YP_011870.1| hypothetical protein DVU2658 [Desulfovibrio vulgaris str. Hildenborough] gi|46450483|gb|AAS97130.1| conserved hypothetical protein [Desulfovibrio vulgaris str. Hildenborough] gi|311234739|gb|ADP87593.1| Radical SAM domain protein [Desulfovibrio vulgaris RCH1] Length = 216 Score = 281 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 108/215 (50%), Positives = 134/215 (62%), Gaps = 6/215 (2%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y +KEIF TLQGEG AGR AVFCRFSGCNLW+G QDR +A C FCDTDFVG G Sbjct: 1 MTYRVKEIFHTLQGEGMRAGRAAVFCRFSGCNLWTGWAQDRPAAVCPFCDTDFVGTDGPG 60 Query: 62 GGRYNVDQLADLIEEQ---WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 GG + + TGE Y V TGGEP LQ+D PLI L+ G E+A+ET Sbjct: 61 GGVFEDAATLAAAILAAFPYKTGEGYRPYVVFTGGEPALQLDRPLIDILHAHGCEVAIET 120 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178 NGT+ P+GIDW+ VSPKAG L + G ELKLV+PQ + PE+Y F +QP DG Sbjct: 121 NGTVRLPEGIDWVTVSPKAGTRLAVTSGDELKLVWPQQGICPESYESLAFTYLLMQPRDG 180 Query: 179 ---PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + A+ +C +P+WRL +QTHK++GI Sbjct: 181 LGDAGRGDAESEAVRWCLAHPRWRLCLQTHKYLGI 215 >gi|46200887|ref|ZP_00056296.2| COG0602: Organic radical activating enzymes [Magnetospirillum magnetotacticum MS-1] Length = 202 Score = 281 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 116/208 (55%), Positives = 144/208 (69%), Gaps = 10/208 (4%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y+++EIF +LQGEG AGR AVF RFSGCNLWSGR++DR A CRFCDTDFVG G Sbjct: 3 YTVREIFHSLQGEGVQAGRAAVFLRFSGCNLWSGRQEDRAKAVCRFCDTDFVG-----GV 57 Query: 64 RYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +Y+ LA+ ++ RY V+TGGEP LQ+D LI AL+ GF +AVETNGT+ Sbjct: 58 KYSDAQSLAEAVKAVG----GSTRYVVVTGGEPGLQLDETLIHALHGLGFSVAVETNGTL 113 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P G+DW+CVSPKAG +L + G ELKLVFPQ +PE + DF F LQPMDGP Sbjct: 114 GLPSGLDWVCVSPKAGTELMVTRGDELKLVFPQDGAAPEAFEHLDFAHFLLQPMDGPDRA 173 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT AI++C +P+WRLS+QTHK +GI Sbjct: 174 ANTAAAIAHCLTHPRWRLSLQTHKIVGI 201 >gi|121997906|ref|YP_001002693.1| radical SAM domain-containing protein [Halorhodospira halophila SL1] gi|121589311|gb|ABM61891.1| Radical SAM domain protein [Halorhodospira halophila SL1] Length = 209 Score = 277 bits (709), Expect = 7e-73, Method: Composition-based stats. Identities = 109/207 (52%), Positives = 133/207 (64%), Gaps = 1/207 (0%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++ +F TLQGEG +GR AVF RF+GCNLWSGRE DR +A C FCDTDFVG G GG Sbjct: 3 YAVHSLFYTLQGEGARSGRPAVFLRFAGCNLWSGREADRATAVCTFCDTDFVGTGGPGGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R+ W G E Y V TGGEP LQ+D L+ AL+ RGFE+AVETNGT+ Sbjct: 63 RFADAPELAAAVAAWWPGGGEP-YVVCTGGEPALQLDAALVAALHARGFEVAVETNGTLP 121 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 P G+DWICVSPKAG +L I G ELKL++PQ P+ + F RF LQP+D Sbjct: 122 LPAGVDWICVSPKAGTELAITAGDELKLIYPQPGAEPQRFTHLAFRRFYLQPLDDNQRGA 181 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 +T + YC +P+W LSVQ HK +GI Sbjct: 182 HTRAVLDYCRGHPQWWLSVQIHKDLGI 208 >gi|144898951|emb|CAM75815.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense MSR-1] Length = 210 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 109/211 (51%), Positives = 131/211 (62%), Gaps = 8/211 (3%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y +KE+F TLQGEGG AGR A+F RF+GCNLWSGRE DR +AQC FCDTDFVG Sbjct: 3 YKVKELFYTLQGEGGQAGRAAIFLRFAGCNLWSGREADRATAQCPFCDTDFVGGDKYADA 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 +A W G V+TGGEP LQ+D LIQAL+ G EIAVETNGTI Sbjct: 63 DALAGAVA----ALWPKGGGGQPLVVITGGEPGLQLDEALIQALHFWGLEIAVETNGTIA 118 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 P GIDW+CVSPKAG DL+ G E+KLV+PQ + P + F + LQP D P Sbjct: 119 LPPGIDWVCVSPKAGQDLETIAGDEIKLVWPQDGIDPTRFEKMPFRHYFLQPKDVPGDSA 178 Query: 184 NT----NLAISYCFQNPKWRLSVQTHKFIGI 210 ++YC +P+WRLS+QTHK +GI Sbjct: 179 AQAAHLQACVAYCLTHPRWRLSLQTHKILGI 209 >gi|94987241|ref|YP_595174.1| hypothetical protein LI0799 [Lawsonia intracellularis PHE/MN1-00] gi|94731490|emb|CAJ54853.1| conserved hypothetical protein [Lawsonia intracellularis PHE/MN1-00] Length = 212 Score = 274 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 107/215 (49%), Positives = 136/215 (63%), Gaps = 7/215 (3%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y IKE+F T+QGEG GR AVFCRFSGCNLWSG+E+DR A+C+FCDTDF+ Sbjct: 1 MSFY-IKELFYTIQGEGVQTGRPAVFCRFSGCNLWSGKEKDRAIAKCQFCDTDFLNADF- 58 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGR----YCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 G + +QL I + + Y V TGGEP LQ++ +I L+K EIA+ Sbjct: 59 -GILDSEEQLVANILQTFPQNNYTHPSYKPYVVFTGGEPSLQLNQVIINLLHKYHIEIAI 117 Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176 ETNGTI P+ IDWI VSPK G +L G ELKLV+PQ N PE Y+ +F+ F LQP Sbjct: 118 ETNGTIPLPKHIDWITVSPKEGNELVTTVGNELKLVWPQQNCDPEKYLTLEFDNFILQPK 177 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 D L N + I YC ++P W+L +Q+HK+IGIR Sbjct: 178 DDKNLSNNIQICIEYCMKHPYWKLGLQSHKWIGIR 212 >gi|170744629|ref|YP_001773284.1| radical SAM domain-containing protein [Methylobacterium sp. 4-46] gi|168198903|gb|ACA20850.1| Radical SAM domain protein [Methylobacterium sp. 4-46] Length = 210 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 116/207 (56%), Positives = 141/207 (68%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y++KEIF TLQGEG AGR AVFCRF+GCNLWSGRE DR A C FCDTDFVG G GG Sbjct: 3 YAVKEIFHTLQGEGAQAGRAAVFCRFAGCNLWSGREADRAEAVCHFCDTDFVGTDGAGGG 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R+ + G + V TGGEPLLQ+D L+ A+ RGF AVETNGT E Sbjct: 63 RFPDAEALAAAIAAAWEGGPRNHFVVFTGGEPLLQLDAALLAAVRARGFAAAVETNGTQE 122 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 P+G+DWICVSPKAG L++ G ELKLV+PQ ++PE+ G DF F LQPMDGP Sbjct: 123 APEGLDWICVSPKAGAPLRLTRGDELKLVYPQAGLAPEDVAGLDFRHFFLQPMDGPDRAA 182 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 + A+++C ++ +WRLS+QTHK IGI Sbjct: 183 HLAAAVAHCRRDARWRLSLQTHKLIGI 209 >gi|94500711|ref|ZP_01307241.1| Organic radical activating enzyme [Oceanobacter sp. RED65] gi|94427266|gb|EAT12246.1| Organic radical activating enzyme [Oceanobacter sp. RED65] Length = 223 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 100/217 (46%), Positives = 130/217 (59%), Gaps = 10/217 (4%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 +++KE F TLQGEG AGR +VF RFS CNLW+G+E R +A C+FCDTD VG G GG Sbjct: 6 FNVKEAFYTLQGEGARAGRASVFIRFSKCNLWNGKESGRGAAVCQFCDTDIVGTDGQNGG 65 Query: 64 RYNVDQLADLIEEQWIT---GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 YN L +L W K Y V TGGEP LQ+ L+ + GFE AVE+NG Sbjct: 66 TYNQQALVELALSLWPQLTDDTKSKPYVVFTGGEPALQLTESLVSDFQQAGFECAVESNG 125 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM---- 176 T+ P +DW+C+SPK ++ +K ELKLV+PQV++SP+ G F L PM Sbjct: 126 TLPLPTNLDWVCISPKGTSEIVVKQCDELKLVYPQVDLSPDAVSGISASYFYLSPMADYG 185 Query: 177 ---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 G + EN A YC +P+WR+S+QTHK +GI Sbjct: 186 EQNSGMIIRENMQAATQYCLDHPQWRMSLQTHKLLGI 222 >gi|121608068|ref|YP_995875.1| hypothetical protein Veis_1081 [Verminephrobacter eiseniae EF01-2] gi|121552708|gb|ABM56857.1| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2] Length = 222 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 120/212 (56%), Positives = 138/212 (65%), Gaps = 2/212 (0%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 YS+KEIF TLQGEGG G AVFCRF+GCNLWSGRE DR A CRFCDTDFVG GT Sbjct: 11 MTYSVKEIFYTLQGEGGQTGMPAVFCRFAGCNLWSGREADRADALCRFCDTDFVGTDGTL 70 Query: 62 GGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ D LA+ I QW + R VLTGGEPLLQVD L+ AL+ + F IAVETNG Sbjct: 71 GGKFAQADALAERIAAQWPAADSAHRLVVLTGGEPLLQVDAALLAALHAQQFRIAVETNG 130 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-DFERFSLQPMDGP 179 ++ P GIDW+CVSPKAG GQELKLV+PQ + F LQPMDGP Sbjct: 131 SLAAPPGIDWLCVSPKAGAPWVQTQGQELKLVWPQAGMDLAAIARTGQFTHRFLQPMDGP 190 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + + I+ C Q P WRLS+QTHK GIR Sbjct: 191 DQAAHIAICIAACLQQPLWRLSLQTHKISGIR 222 >gi|171463302|ref|YP_001797415.1| Radical SAM domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192840|gb|ACB43801.1| Radical SAM domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 198 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 110/198 (55%), Positives = 138/198 (69%), Gaps = 8/198 (4%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y++KE F LQGEG HAGR AVFCRF+GCNLWSGRE+DR +A C+FCDTDFVG G G Sbjct: 1 MYTVKEPFPILQGEGAHAGRAAVFCRFAGCNLWSGREEDRGAAICQFCDTDFVGSDGLGG 60 Query: 63 GRY-NVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 G++ + LAD IE W + + RY V TGGEPLLQ+D LI AL+++GF +A+ETN Sbjct: 61 GKFETANALADAIESSWRSTSAGPQQRYVVFTGGEPLLQLDDELIAALHQKGFAVAIETN 120 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP-----ENYIGFDFERFSLQ 174 GTI+ P+GIDW+CVSPKAG +L + ELKLV PQ + S + D+ LQ Sbjct: 121 GTIKIPKGIDWVCVSPKAGSELIVLQADELKLVVPQQDHSELEKIVARFEKMDYRNRFLQ 180 Query: 175 PMDGPFLEENTNLAISYC 192 PMDGP L+ NT LA+S C Sbjct: 181 PMDGPGLKSNTELAVSLC 198 >gi|299148832|ref|ZP_07041894.1| GntS [Bacteroides sp. 3_1_23] gi|298513593|gb|EFI37480.1| GntS [Bacteroides sp. 3_1_23] Length = 183 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 81/211 (38%), Positives = 106/211 (50%), Gaps = 28/211 (13%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + I EIF +LQGEG H G A+F RFSGCNL +C FCDT Sbjct: 1 MMMRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDTQH-----E 44 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 +G D++ ++ + VLTGGEP L VD LI L++ G + +ETNG Sbjct: 45 EGKMMTDDEIIAEVK------KYPAVTVVLTGGEPSLWVDDELIDRLHQAGKYVTIETNG 98 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T P IDW+ SPK G L I E+K+V+ ++S + E F LQP Sbjct: 99 TRPLPVAIDWVTCSPKQGVKLAIDRMDEVKVVYEGQDISI--FELLPAEHFFLQPCSC-- 154 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT + ++PKWRLS+QTHK I IR Sbjct: 155 --NNTASTVDCVMRHPKWRLSLQTHKLIDIR 183 >gi|160887244|ref|ZP_02068247.1| hypothetical protein BACOVA_05261 [Bacteroides ovatus ATCC 8483] gi|315919753|ref|ZP_07915993.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156107655|gb|EDO09400.1| hypothetical protein BACOVA_05261 [Bacteroides ovatus ATCC 8483] gi|313693628|gb|EFS30463.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 183 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 80/211 (37%), Positives = 107/211 (50%), Gaps = 28/211 (13%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + I EIF +LQGEG H G A+F RFSGCNL +C FCDT Sbjct: 1 MTMRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDTQH-----E 44 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 +G +++ ++ + VLTGGEP L +D LI L++ G + +ETNG Sbjct: 45 EGTMMTDEEIITKVK------KYPAVTVVLTGGEPSLWIDDQLIDLLHQAGKYVTIETNG 98 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T P IDW+ SPK G L I E+K+V+ ++S + E F LQP Sbjct: 99 THPLPASIDWVTCSPKQGAKLAIDRMNEVKVVYEGQDISI--FELLPAEHFFLQPCSC-- 154 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT L + ++PKWRLS+QTHK I IR Sbjct: 155 --NNTALTVDCVMRHPKWRLSLQTHKLIDIR 183 >gi|298384120|ref|ZP_06993681.1| GntS [Bacteroides sp. 1_1_14] gi|298263724|gb|EFI06587.1| GntS [Bacteroides sp. 1_1_14] Length = 182 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 82/210 (39%), Positives = 105/210 (50%), Gaps = 28/210 (13%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT Sbjct: 1 MMRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCSFCDTQH-----EA 44 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 G D++ + + +LTGGEP L +D LI L+K G + +ETNGT Sbjct: 45 GTLMTDDEIIAEVS------KYPAVTVILTGGEPSLWIDDALIDRLHKAGKYVCIETNGT 98 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 P+ IDW+ SPK G L I E+K+V+ ++S Y E F LQP Sbjct: 99 RPLPESIDWVTCSPKQGVKLGITRMDEVKVVYEGQDISI--YELLPAEHFFLQPCSC--- 153 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT L + ++PKWRLS+QTHK I IR Sbjct: 154 -NNTALTVDCVMRHPKWRLSLQTHKLIDIR 182 >gi|29349862|ref|NP_813365.1| hypothetical protein BT_4454 [Bacteroides thetaiotaomicron VPI-5482] gi|29341773|gb|AAO79559.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] Length = 182 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 81/210 (38%), Positives = 105/210 (50%), Gaps = 28/210 (13%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT Sbjct: 1 MMRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCSFCDTQH-----EA 44 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 G D++ + + +LTGGEP L +D LI L++ G + +ETNGT Sbjct: 45 GTLMTDDEIIAEVS------KYPAVTVILTGGEPSLWIDDALIDRLHEAGKYVCIETNGT 98 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 P+ IDW+ SPK G L I E+K+V+ ++S Y E F LQP Sbjct: 99 RPLPESIDWVTCSPKQGVKLGITRMDEVKVVYEGQDISI--YELLPAEHFFLQPCSC--- 153 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT L + ++PKWRLS+QTHK I IR Sbjct: 154 -NNTALTVDCVMRHPKWRLSLQTHKLIDIR 182 >gi|253569769|ref|ZP_04847178.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251840150|gb|EES68232.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 181 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 81/209 (38%), Positives = 105/209 (50%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT G Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCSFCDTQH-----EAG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 D++ + + +LTGGEP L +D LI L++ G + +ETNGT Sbjct: 45 TLMTDDEIIAEVS------KYPAVTVILTGGEPSLWIDDALIDRLHEAGKYVCIETNGTR 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+ IDW+ SPK G L I E+K+V+ ++S Y E F LQP Sbjct: 99 PLPESIDWVTCSPKQGVKLGITRMDEVKVVYEGQDISI--YELLPAEHFFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT L + ++PKWRLS+QTHK I IR Sbjct: 153 NNTALTVDCVMRHPKWRLSLQTHKLIDIR 181 >gi|262408739|ref|ZP_06085285.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|293369177|ref|ZP_06615771.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f] gi|294647054|ref|ZP_06724666.1| radical SAM domain protein [Bacteroides ovatus SD CC 2a] gi|294807238|ref|ZP_06766052.1| radical SAM domain protein [Bacteroides xylanisolvens SD CC 1b] gi|298481567|ref|ZP_06999759.1| GntS [Bacteroides sp. D22] gi|262353604|gb|EEZ02698.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292635760|gb|EFF54258.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f] gi|292637600|gb|EFF56006.1| radical SAM domain protein [Bacteroides ovatus SD CC 2a] gi|294445536|gb|EFG14189.1| radical SAM domain protein [Bacteroides xylanisolvens SD CC 1b] gi|295087026|emb|CBK68549.1| Organic radical activating enzymes [Bacteroides xylanisolvens XB1A] gi|298272431|gb|EFI14000.1| GntS [Bacteroides sp. D22] Length = 182 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 79/210 (37%), Positives = 105/210 (50%), Gaps = 28/210 (13%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIF +LQGEG H G A+F RFSGCNL +C FCDT + Sbjct: 1 MMRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDTQH-----EE 44 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 G D++ ++ + VLTGGEP L +D LI L++ G + +ETNGT Sbjct: 45 GKMMTDDEIIAEVK------KYPAVTVVLTGGEPSLWIDDELIDRLHQAGKYVTIETNGT 98 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 P IDW+ SPK G L I E+K+V+ ++S + E F LQP Sbjct: 99 RPLPAAIDWVTCSPKQGVKLAIDRMDEVKVVYEGQDISI--FELLPAEHFFLQPCSC--- 153 Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT + ++PKWRLS+QTHK I IR Sbjct: 154 -NNTASTVDCVMRHPKWRLSLQTHKLIDIR 182 >gi|237715731|ref|ZP_04546212.1| conserved hypothetical protein [Bacteroides sp. D1] gi|229444440|gb|EEO50231.1| conserved hypothetical protein [Bacteroides sp. D1] Length = 181 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 79/209 (37%), Positives = 105/209 (50%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G A+F RFSGCNL +C FCDT +G Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDTQH-----EEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 D++ ++ + VLTGGEP L +D LI L++ G + +ETNGT Sbjct: 45 KMMTDDEIIAEVK------KYPAVTVVLTGGEPSLWIDDELIDRLHQAGKYVTIETNGTR 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G L I E+K+V+ ++S + E F LQP Sbjct: 99 PLPAAIDWVTCSPKQGVKLAIDRMDEVKVVYEGQDISI--FELLPAEHFFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT + ++PKWRLS+QTHK I IR Sbjct: 153 NNTASTVDCVMRHPKWRLSLQTHKLIDIR 181 >gi|237721523|ref|ZP_04552004.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229449319|gb|EEO55110.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 181 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 79/209 (37%), Positives = 105/209 (50%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G A+F RFSGCNL +C FCDT +G Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDTQH-----EEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 D++ ++ + VLTGGEP L +D LI L++ G + +ETNGT Sbjct: 45 KMMTDDEIIAEVK------KYPAVTVVLTGGEPSLWIDDELIDRLHEAGKYVTIETNGTR 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G L I E+K+V+ ++S + E F LQP Sbjct: 99 PLPAAIDWVTCSPKQGGKLAIDRMDEVKVVYEGQDISI--FELLPAEHFFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT + ++PKWRLS+QTHK I IR Sbjct: 153 NNTASTVDCVMRHPKWRLSLQTHKLIDIR 181 >gi|260171438|ref|ZP_05757850.1| hypothetical protein BacD2_06190 [Bacteroides sp. D2] Length = 181 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 79/209 (37%), Positives = 106/209 (50%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G A+F RFSGCNL +C FCDT +G Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDTQH-----EEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +++ ++ + VLTGGEP L +D LI L++ G + +ETNGT Sbjct: 45 TMMTDEEIITKVK------KYPAVTVVLTGGEPSLWIDDQLIDLLHQAGKYVTIETNGTH 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G L I E+K+V+ ++S + E F LQP Sbjct: 99 PLPASIDWVTCSPKQGAKLAIDRMNEVKVVYEGQDISI--FELLPAEHFFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT L + ++PKWRLS+QTHK I IR Sbjct: 153 NNTALTVDCVMRHPKWRLSLQTHKLIDIR 181 >gi|53714880|ref|YP_100872.1| hypothetical protein BF3595 [Bacteroides fragilis YCH46] gi|253565984|ref|ZP_04843438.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|52217745|dbj|BAD50338.1| conserved hypothetical protein [Bacteroides fragilis YCH46] gi|251945088|gb|EES85526.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 181 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 78/208 (37%), Positives = 103/208 (49%), Gaps = 28/208 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCDFCDTRH-----EEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + I G+ +LTGGEP L +D I L++ G + +ETNGT Sbjct: 45 EMMTDEDIVNEI------GKYPAVMVILTGGEPSLWIDDAFIDLLHRAGKYVCIETNGTK 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G +L + E+K+V+ N+ Y E F LQP Sbjct: 99 PLPAAIDWVTCSPKQGVNLALNRMDEVKVVYEGQNIDV--YEQLPAEHFFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT + ++PKWRLS+QTHK I I Sbjct: 153 NNTAETVDCVMRHPKWRLSLQTHKLINI 180 >gi|60682861|ref|YP_213005.1| hypothetical protein BF3399 [Bacteroides fragilis NCTC 9343] gi|60494295|emb|CAH09090.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] gi|301164330|emb|CBW23888.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 181 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 78/208 (37%), Positives = 103/208 (49%), Gaps = 28/208 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCDFCDTRH-----EEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + I G+ +LTGGEP L +D I L++ G + +ETNGT Sbjct: 45 EMMTDEDIVNEI------GKYPAVMVILTGGEPSLWIDDAFIDLLHRAGKYVCIETNGTK 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G +L + E+K+V+ N+ Y E F LQP Sbjct: 99 PLPVAIDWVTCSPKQGVNLALNRMDEVKVVYEGQNIDV--YEQLPAEHFFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT + ++PKWRLS+QTHK I I Sbjct: 153 NNTAETVDCVMRHPKWRLSLQTHKLINI 180 >gi|265766736|ref|ZP_06094565.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263253113|gb|EEZ24589.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 181 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 78/208 (37%), Positives = 102/208 (49%), Gaps = 28/208 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCDFCDTRH-----EEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + I G+ +LTGGEP L +D I L+ G + +ETNGT Sbjct: 45 EMMTDEDIVNEI------GKYPAVMVILTGGEPSLWIDDAFIDLLHHAGKYVCIETNGTK 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G +L + E+K+V+ N+ Y E F LQP Sbjct: 99 PLPAAIDWVTCSPKQGVNLALNRMDEVKVVYEGQNIDV--YEQLPAEHFFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT + ++PKWRLS+QTHK I I Sbjct: 153 NNTAETVDCVMRHPKWRLSLQTHKLINI 180 >gi|153809323|ref|ZP_01961991.1| hypothetical protein BACCAC_03636 [Bacteroides caccae ATCC 43185] gi|149128093|gb|EDM19314.1| hypothetical protein BACCAC_03636 [Bacteroides caccae ATCC 43185] Length = 181 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 79/209 (37%), Positives = 108/209 (51%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG + G A+F RFSGCNL +C FCDT +G Sbjct: 1 MRKINEIFYSLQGEGYYTGTPAIFIRFSGCNL-----------KCSFCDTQH-----EEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 D++ ++ + VLTGGEP L +D LI L++ G + VETNGT Sbjct: 45 TMMTDDEIIAEVK------KYPAVTVVLTGGEPSLWIDATLIDRLHEAGKYVTVETNGTN 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+ +DW+ SPK G +LKI E+K+V+ ++S + E F LQP Sbjct: 99 PLPESVDWVTCSPKQGVELKINRIDEVKVVYEGQDISI--FELLPAEHFFLQPCSCI--- 153 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT + ++PKWRLS+QTHK I IR Sbjct: 154 -NTADTVDCVMRHPKWRLSLQTHKLIDIR 181 >gi|255011037|ref|ZP_05283163.1| hypothetical protein Bfra3_17992 [Bacteroides fragilis 3_1_12] gi|313148842|ref|ZP_07811035.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137609|gb|EFR54969.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 181 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 75/208 (36%), Positives = 101/208 (48%), Gaps = 28/208 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT G Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCDFCDTRH-----ETG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +++ + ++ + +LTGGEP L +D I L+ G + +ETNGT Sbjct: 45 EMMTDEEIVNEVK------KYPAVMVILTGGEPSLWIDDAFIDLLHGAGKYVCIETNGTK 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G L + E+K+V+ N+ Y E F LQP Sbjct: 99 PLPAAIDWVTCSPKQGVKLALNRMDEVKVVYEGQNIDV--YEQLPAEHFFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT + ++P+WRLS+QTHK I I Sbjct: 153 NNTAETVDCVMRHPRWRLSLQTHKLINI 180 >gi|298376715|ref|ZP_06986670.1| hypothetical protein HMPREF0104_02900 [Bacteroides sp. 3_1_19] gi|301310018|ref|ZP_07215957.1| GntS [Bacteroides sp. 20_3] gi|298266593|gb|EFI08251.1| hypothetical protein HMPREF0104_02900 [Bacteroides sp. 3_1_19] gi|300831592|gb|EFK62223.1| GntS [Bacteroides sp. 20_3] Length = 181 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 76/209 (36%), Positives = 106/209 (50%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------RCSFCDTRH-----EEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +++ + + R +LTGGEP L +D LI L + G +I +ETNGT Sbjct: 45 VMMTDEEIVEKVSS------FPARMVILTGGEPSLWIDKALISRLREAGKQICIETNGTR 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDW+ SPK + ++ E+K+V+ ++S Y LQP Sbjct: 99 PLPDGIDWVTCSPKENAPVVLERVDEIKVVYTGQDLS--AYAEIPARYHFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT + Y ++P+WRLS+QTHK I I+ Sbjct: 153 QNTKEVVDYILRHPRWRLSLQTHKLIDIQ 181 >gi|255013373|ref|ZP_05285499.1| hypothetical protein B2_05655 [Bacteroides sp. 2_1_7] gi|262381499|ref|ZP_06074637.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296676|gb|EEY84606.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 181 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 76/209 (36%), Positives = 106/209 (50%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------RCSFCDTRH-----EEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +++ + + R +LTGGEP L +D LI L + G +I +ETNGT Sbjct: 45 VMMTDEEIVEKVSS------FPARIVILTGGEPSLWIDKALISRLREAGKQICIETNGTR 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDW+ SPK + ++ E+K+V+ ++S Y LQP Sbjct: 99 PLPDGIDWVTCSPKENAPVVLERIDEIKVVYTGQDLS--AYAEIPARYHFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT + Y ++P+WRLS+QTHK I I+ Sbjct: 153 QNTKEVVDYILRHPRWRLSLQTHKLIDIQ 181 >gi|189467678|ref|ZP_03016463.1| hypothetical protein BACINT_04069 [Bacteroides intestinalis DSM 17393] gi|189435942|gb|EDV04927.1| hypothetical protein BACINT_04069 [Bacteroides intestinalis DSM 17393] Length = 181 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 81/209 (38%), Positives = 105/209 (50%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCSFCDTRH-----EEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + D++ + G+ +LTGGEP L VD I L++ G + +ETNGT Sbjct: 45 VLMSDDEIIAEV------GKYPAVTVILTGGEPSLWVDEAFIDRLHQAGKYVCIETNGTN 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G L I E+K+V+ ++ Y E F LQP Sbjct: 99 PLPPNIDWVTCSPKQGVKLGITRMDEVKVVYEGQDIGV--YELLPAEYFFLQPCSCS--- 153 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT ++ Q+PKWRLS+QTHK I IR Sbjct: 154 -NTAETVACVMQHPKWRLSLQTHKLIDIR 181 >gi|224538811|ref|ZP_03679350.1| hypothetical protein BACCELL_03706 [Bacteroides cellulosilyticus DSM 14838] gi|224519568|gb|EEF88673.1| hypothetical protein BACCELL_03706 [Bacteroides cellulosilyticus DSM 14838] Length = 181 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 82/209 (39%), Positives = 107/209 (51%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCSFCDTRH-----EEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + D++ + G+ +LTGGEP L +D I L++ G + +ETNGT Sbjct: 45 VLMSDDEIIAEV------GKYPAVTVILTGGEPSLWIDEVFIDRLHQAGKYVCIETNGTN 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 PQ IDW+ SPK G L I E+K+V+ ++ E Y E F LQP Sbjct: 99 PLPQNIDWVTCSPKQGVKLGITRMDEVKVVYEGQDI--EVYELLPAEYFFLQPCSCS--- 153 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT ++ Q+PKWRLS+QTHK I IR Sbjct: 154 -NTAETVACVMQHPKWRLSLQTHKLIDIR 181 >gi|256840895|ref|ZP_05546403.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256738167|gb|EEU51493.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 181 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 76/209 (36%), Positives = 106/209 (50%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------RCGFCDTRH-----EEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +++ + + R +LTGGEP L +D LI L + G +I +ETNGT Sbjct: 45 VMMTDEEIVEKVSS------FPARMVILTGGEPSLWIDKALISRLREAGKQICIETNGTR 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDW+ SPK + ++ E+K+V+ ++S Y LQP Sbjct: 99 PLPDGIDWVTCSPKENAPVVLERVDEIKVVYTGQDLS--AYAEIPARYHFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT + Y ++P+WRLS+QTHK I I+ Sbjct: 153 QNTKEVVDYILRHPRWRLSLQTHKLIDIQ 181 >gi|150007939|ref|YP_001302682.1| hypothetical protein BDI_1300 [Parabacteroides distasonis ATCC 8503] gi|149936363|gb|ABR43060.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] Length = 181 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 75/209 (35%), Positives = 106/209 (50%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------RCGFCDTRH-----EEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +++ + + R +LTGGEP L +D LI L + G ++ +ETNGT Sbjct: 45 VMMTDEEIVEKVSS------FPARMVILTGGEPSLWIDKSLISRLREAGKQVCIETNGTR 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDW+ SPK + ++ E+K+V+ ++S Y LQP Sbjct: 99 PLPDGIDWVTCSPKENAPVVLERVDEIKVVYTGQDLS--AYAEIPARYHFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT + Y ++P+WRLS+QTHK I I+ Sbjct: 153 QNTKEVVDYILRHPRWRLSLQTHKLIDIQ 181 >gi|298376475|ref|ZP_06986430.1| hypothetical protein HMPREF0104_02657 [Bacteroides sp. 3_1_19] gi|298266353|gb|EFI08011.1| hypothetical protein HMPREF0104_02657 [Bacteroides sp. 3_1_19] Length = 181 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 77/209 (36%), Positives = 106/209 (50%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF ++QGEG G AVF RFSGCNL +C FCDT+ +G Sbjct: 1 MKKINEIFYSIQGEGYFTGTPAVFVRFSGCNL-----------RCPFCDTEH-----KEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + D++ I + VLTGGEP +QV L+ + G + +ETNGT+ Sbjct: 45 KMLSDDEIIAEIRR------YPALHVVLTGGEPCMQVTYDLVDKIKATGRFVQIETNGTL 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 PP IDWI SPK G + ELK+V+ ++S Y + + LQP G Sbjct: 99 VPPVNIDWITCSPKEGGKTVVINPNELKVVYTGQDMS--QYDKYSAGVYYLQPCSG---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT I+Y + PKW+LS+QTHK + +R Sbjct: 153 RNTKEVINYIKEYPKWKLSLQTHKILNVR 181 >gi|218129819|ref|ZP_03458623.1| hypothetical protein BACEGG_01399 [Bacteroides eggerthii DSM 20697] gi|317475833|ref|ZP_07935090.1| radical SAM superfamily protein [Bacteroides eggerthii 1_2_48FAA] gi|217987929|gb|EEC54254.1| hypothetical protein BACEGG_01399 [Bacteroides eggerthii DSM 20697] gi|316907993|gb|EFV29690.1| radical SAM superfamily protein [Bacteroides eggerthii 1_2_48FAA] Length = 181 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 77/209 (36%), Positives = 104/209 (49%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFIRFSGCNL-----------KCSFCDTQH-----EEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + +++ D + GE +LTGGEP L +D + L++ G + +ETNGT Sbjct: 45 VLMSDEEILDAV------GEYPATTVILTGGEPSLWIDREFVDRLHRIGKYVCIETNGTR 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G I E+K+V+ +++ Y F LQP Sbjct: 99 ALPDNIDWVTCSPKQGAKPVISRMDEVKVVYEGQDITV--YELLPAGHFFLQPCSCS--- 153 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 N ++ Q+PKWRLS+QTHK I IR Sbjct: 154 -NVAETVACVMQHPKWRLSLQTHKLIDIR 181 >gi|319901441|ref|YP_004161169.1| Radical SAM domain protein [Bacteroides helcogenes P 36-108] gi|319416472|gb|ADV43583.1| Radical SAM domain protein [Bacteroides helcogenes P 36-108] Length = 181 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 76/209 (36%), Positives = 105/209 (50%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G Sbjct: 1 MRKINEIFYSLQGEGYHTGIPAVFIRFSGCNL-----------KCSFCDT-----HHEEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + D++ + + + +LTGGEP L +D + L++ G + +ETNGT Sbjct: 45 RLMSDDEIMEEVR------KYPAATVILTGGEPSLWIDSEFVDRLHRAGKYVCIETNGTH 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G +L+I G E+K+V+ +++ Y F LQP Sbjct: 99 PLPDNIDWVTCSPKLGGNLRITGMDEVKVVYEGQDITV--YEQLPAGHFFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 N + +PKWRLS+QTHK I IR Sbjct: 153 NNIGETVDCVMHHPKWRLSLQTHKLIDIR 181 >gi|160888847|ref|ZP_02069850.1| hypothetical protein BACUNI_01266 [Bacteroides uniformis ATCC 8492] gi|156861746|gb|EDO55177.1| hypothetical protein BACUNI_01266 [Bacteroides uniformis ATCC 8492] Length = 181 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 75/209 (35%), Positives = 101/209 (48%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT G Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCPFCDTQH-----EDG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + + +LTGGEP L +D + L++ G + +ETNGT Sbjct: 45 ILMSDEDIVTEVSR------YPAATVILTGGEPSLWIDREFVDCLHQAGKYVCIETNGTH 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G L+I E+K+V+ +++ Y F LQP Sbjct: 99 PLPDNIDWVTCSPKQGVKLEITRMNEVKVVYEGQDITV--YEQLPAGHFFLQPCSCS--- 153 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT + ++PKWRLS+QTHK I IR Sbjct: 154 -NTAETVDCVMKHPKWRLSLQTHKLIDIR 181 >gi|189460362|ref|ZP_03009147.1| hypothetical protein BACCOP_00999 [Bacteroides coprocola DSM 17136] gi|189432914|gb|EDV01899.1| hypothetical protein BACCOP_00999 [Bacteroides coprocola DSM 17136] Length = 181 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 84/208 (40%), Positives = 112/208 (53%), Gaps = 28/208 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------KCSFCDTQH-------- 41 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + ++I E + +LTGGEP L +D L +AL+ G IA+ETNGT Sbjct: 42 EEFRMMTDDEIIAEVC---TYPCQMVILTGGEPGLSIDSQLTKALHAAGKYIAIETNGTC 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+ IDW+ SPK G LK+ E+K+V+ +VSP Y+ + LQP G Sbjct: 99 VLPEDIDWVTCSPKEGTTLKLHHIDEVKVVYVGQDVSP--YLKLPAKHHFLQPCSG---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +NTN I+Y ++P+WRLS+QTHK I I Sbjct: 153 QNTNDVIAYIKEHPQWRLSLQTHKLIDI 180 >gi|294775146|ref|ZP_06740672.1| conserved hypothetical protein [Bacteroides vulgatus PC510] gi|294450958|gb|EFG19432.1| conserved hypothetical protein [Bacteroides vulgatus PC510] Length = 193 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 76/210 (36%), Positives = 108/210 (51%), Gaps = 28/210 (13%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + + I EIF +LQGEG H G AVF RFSGCNL +C FCDT Sbjct: 11 LSMRRINEIFYSLQGEGYHTGIPAVFVRFSGCNL-----------RCPFCDTQH-----E 54 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 +G + + + + + + +LTGGEP L +D L+ AL+ G + +ETNG Sbjct: 55 EGTLMSDEDIVMEV------AKYSTQVVILTGGEPGLWIDEKLVDALHHEGKYVCIETNG 108 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 T P+ IDW+ SPK G + + E+K+V+ +VS Y+ + LQP Sbjct: 109 TCLLPENIDWVTCSPKEGAKINLDRIDEVKVVYVGQDVS--AYLDLSASHYFLQPCSC-- 164 Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT I+Y Q+P+WRLS+QTHK + I Sbjct: 165 --ANTEEVIAYILQHPEWRLSLQTHKLLQI 192 >gi|329955365|ref|ZP_08296273.1| radical SAM domain protein [Bacteroides clarus YIT 12056] gi|328525768|gb|EGF52792.1| radical SAM domain protein [Bacteroides clarus YIT 12056] Length = 181 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 76/208 (36%), Positives = 103/208 (49%), Gaps = 28/208 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF R SGCNL +C FCDT +G Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFIRLSGCNL-----------KCPFCDTQH-----EEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +++ + G+ +LTGGEP L +D + L++ G + +ETNGT Sbjct: 45 VLMTDEEIMAEV------GKYPAMMVILTGGEPSLWIDREFVDRLHQLGKYVCIETNGTH 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 E P IDW+ SPK G L I E+K+V+ +++ Y + F LQP Sbjct: 99 ELPDNIDWVTCSPKRGAKLSISRMDEVKVVYESQDITV--YEQLPAKHFFLQPCSCS--- 153 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT + Q+PKWRLS+QTHK I I Sbjct: 154 -NTVETVVRVMQHPKWRLSLQTHKLINI 180 >gi|299141903|ref|ZP_07035038.1| organic radical activating enzyme [Prevotella oris C735] gi|298576754|gb|EFI48625.1| organic radical activating enzyme [Prevotella oris C735] Length = 190 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 87/213 (40%), Positives = 114/213 (53%), Gaps = 28/213 (13%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 K Y + EIF +LQGEG + GR AVF RFSGCNL +C FCDTDF Sbjct: 3 KTYKVNEIFYSLQGEGRNTGRAAVFIRFSGCNL-----------KCSFCDTDFKLYH--- 48 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + + D + E G + VLTGGEP LQVD LI AL+ GF +A+E+NGT Sbjct: 49 --EMTAEAIVDAVREWKTAG-----FVVLTGGEPTLQVDSQLIDALHAEGFYVAMESNGT 101 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 PP +DW+ +SPK + + ELK +F P + +G + + + LQP D Sbjct: 102 NVPPANLDWLTISPKEH--VVVTECNELKCIFD--GQKPVDDLGIEADYYYLQPCDVGND 157 Query: 182 EEN---TNLAISYCFQNPKWRLSVQTHKFIGIR 211 +N T I Y +PKWRLS+QTHK IG + Sbjct: 158 VQNRAITQACIRYIASHPKWRLSLQTHKMIGFQ 190 >gi|212693923|ref|ZP_03302051.1| hypothetical protein BACDOR_03445 [Bacteroides dorei DSM 17855] gi|237724017|ref|ZP_04554498.1| conserved hypothetical protein [Bacteroides sp. D4] gi|212663455|gb|EEB24029.1| hypothetical protein BACDOR_03445 [Bacteroides dorei DSM 17855] gi|229437681|gb|EEO47758.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 181 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 77/208 (37%), Positives = 108/208 (51%), Gaps = 28/208 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G Sbjct: 1 MRRINEIFYSLQGEGYHTGIPAVFVRFSGCNL-----------RCPFCDTQH-----EEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + +A + + + +LTGGEP L +D L+ AL+ G + +ETNGT Sbjct: 45 TLMSDEDIAMEV------AKYSTQVVILTGGEPGLWIDEKLVDALHHEGKYVCIETNGTC 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+ IDW+ SPK G + + E+K+V+ +VS Y+ + LQP Sbjct: 99 LLPENIDWVTCSPKEGAKINLDRIDEVKVVYVGQDVS--AYLDLSASHYFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT I+Y Q+P+WRLS+QTHK + I Sbjct: 153 ANTEEVIAYILQHPEWRLSLQTHKLLQI 180 >gi|167763255|ref|ZP_02435382.1| hypothetical protein BACSTE_01627 [Bacteroides stercoris ATCC 43183] gi|167698549|gb|EDS15128.1| hypothetical protein BACSTE_01627 [Bacteroides stercoris ATCC 43183] Length = 181 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 76/209 (36%), Positives = 105/209 (50%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------KCSFCDTQH-----EEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + +++ + G+ +LTGGEP L +D + L++ G + +ETNGT Sbjct: 45 VWMSDEEILAEV------GKYPAMTVILTGGEPSLWIDREFVDCLHRMGKYVCIETNGTH 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G L I E+K+V+ +++ Y F LQP Sbjct: 99 SLPDNIDWVTCSPKQGAKLCISRMDEVKVVYEGQDIAV--YESLPAGHFFLQPCSCS--- 153 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT ++ Q+PKWRLS+QTHK I I+ Sbjct: 154 -NTAETVACVMQHPKWRLSLQTHKLIEIK 181 >gi|270293623|ref|ZP_06199825.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275090|gb|EFA20950.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 181 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 75/209 (35%), Positives = 102/209 (48%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT G Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCPFCDTQH-----EDG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + + + +LTGGEP L +D + L++ G + +ETNGT Sbjct: 45 ILMSDEDIVTEVS------KYPAATVILTGGEPSLWIDREFVDCLHQAGKYVCIETNGTR 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G L+I E+K+V+ +++ Y F LQP Sbjct: 99 PLPDNIDWVTCSPKQGVKLEITRMNEVKVVYEGQDITV--YEQLPAGHFFLQPCSCS--- 153 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT + ++PKWRLS+QTHK I IR Sbjct: 154 -NTAETVDCVMKHPKWRLSLQTHKLIDIR 181 >gi|317479410|ref|ZP_07938544.1| radical SAM superfamily protein [Bacteroides sp. 4_1_36] gi|316904484|gb|EFV26304.1| radical SAM superfamily protein [Bacteroides sp. 4_1_36] Length = 181 Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats. Identities = 75/209 (35%), Positives = 101/209 (48%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT G Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCLFCDTQH-----EDG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + + +LTGGEP L +D + L++ G + +ETNGT Sbjct: 45 ILMSDEDIVTEVSR------YPAATVILTGGEPSLWIDREFVDCLHQAGKYVCIETNGTR 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G L+I E+K+V+ +++ Y F LQP Sbjct: 99 PLPDNIDWVTCSPKQGVKLEITRMNEVKVVYEGQDITV--YEQLPAGHFFLQPCSCS--- 153 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 NT + ++PKWRLS+QTHK I IR Sbjct: 154 -NTAETVDCVMKHPKWRLSLQTHKLIDIR 181 >gi|281426145|ref|ZP_06257058.1| radical SAM domain protein [Prevotella oris F0302] gi|281399721|gb|EFB30552.1| radical SAM domain protein [Prevotella oris F0302] Length = 190 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 86/213 (40%), Positives = 114/213 (53%), Gaps = 28/213 (13%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 K Y + EIF +LQGEG + GR AVF RFSGCNL +C FCDTDF Sbjct: 3 KTYKVNEIFYSLQGEGRNTGRAAVFIRFSGCNL-----------KCSFCDTDFKLYH--- 48 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + + D + + G + VLTGGEP LQVD LI AL+ GF +A+E+NGT Sbjct: 49 --EMTAEAIVDAVRDWKTAG-----FVVLTGGEPTLQVDGKLIDALHAEGFYVAMESNGT 101 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 PP +DW+ +SPK + + ELK +F P + +G + + + LQP D Sbjct: 102 NVPPPNLDWLTISPKEH--VVVTECNELKCIFD--GQKPVDDLGIEADYYYLQPCDVGND 157 Query: 182 EEN---TNLAISYCFQNPKWRLSVQTHKFIGIR 211 +N T I Y +PKWRLS+QTHK IG + Sbjct: 158 VQNRTITQACIRYIASHPKWRLSLQTHKMIGFQ 190 >gi|150004624|ref|YP_001299368.1| hypothetical protein BVU_2083 [Bacteroides vulgatus ATCC 8482] gi|254883105|ref|ZP_05255815.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319643625|ref|ZP_07998245.1| hypothetical protein HMPREF9011_03847 [Bacteroides sp. 3_1_40A] gi|149933048|gb|ABR39746.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] gi|254835898|gb|EET16207.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317384794|gb|EFV65753.1| hypothetical protein HMPREF9011_03847 [Bacteroides sp. 3_1_40A] Length = 181 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 76/208 (36%), Positives = 107/208 (51%), Gaps = 28/208 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G Sbjct: 1 MRRINEIFYSLQGEGYHTGIPAVFVRFSGCNL-----------RCPFCDTQH-----EEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + + + + +LTGGEP L +D L+ AL+ G + +ETNGT Sbjct: 45 TLMSDEDIVMEV------AKYSTQVVILTGGEPGLWIDEKLVDALHHEGKYVCIETNGTC 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+ IDW+ SPK G + + E+K+V+ +VS Y+ + LQP Sbjct: 99 LLPENIDWVTCSPKEGAKINLDRIDEVKVVYVGQDVS--AYLDLSASHYFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT I+Y Q+P+WRLS+QTHK + I Sbjct: 153 ANTEEVIAYILQHPEWRLSLQTHKLLQI 180 >gi|224026000|ref|ZP_03644366.1| hypothetical protein BACCOPRO_02751 [Bacteroides coprophilus DSM 18228] gi|224019236|gb|EEF77234.1| hypothetical protein BACCOPRO_02751 [Bacteroides coprophilus DSM 18228] Length = 181 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 81/208 (38%), Positives = 108/208 (51%), Gaps = 28/208 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG HAG AVF RFSGCNL +C FCDT +G Sbjct: 1 MKKINEIFYSLQGEGYHAGTPAVFVRFSGCNL-----------KCDFCDTRH-----EEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + +E+ R +LTGGEP L +D L+ AL+ G + +ETNGT Sbjct: 45 TEMENGDIVKAVEQ------YPCRMVILTGGEPGLWIDSALVDALHASGRYVCIETNGTC 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+ IDW+ SPK G LK+ E+K+V+ +VS + + LQP Sbjct: 99 LLPENIDWVTCSPKQGTSLKVAHVDEVKVVYLGQDVS--ACLDIPARHYFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +NT+ I+Y Q+P WRLS+QTHK I I Sbjct: 153 QNTDEVIAYIKQHPVWRLSLQTHKLINI 180 >gi|322831395|ref|YP_004211422.1| Radical SAM domain protein [Rahnella sp. Y9602] gi|321166596|gb|ADW72295.1| Radical SAM domain protein [Rahnella sp. Y9602] Length = 223 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 95/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFETLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWDKIADRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + G +QL ++I +Q R+ V+TGGEP + L Sbjct: 52 VDMQRILVKTEESDAWGNATSEQLLEVIAQQG----YTARHVVITGGEPCIYDLTELTSL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L K GF +ET+GT E + W+ VSPK +K E+K Sbjct: 108 LEKSGFSCQIETSGTHEVRCSVNTWVTVSPKVNMRGGYDILPQALKRADEVKHPVARQRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ E +LQP+ EE T L I+ C WRLS+QTHK++ I Sbjct: 168 IDALDALLETLTDSKARIIALQPISQK--EEATRLCIATCIAR-NWRLSMQTHKYLNI 222 >gi|329961992|ref|ZP_08300003.1| radical SAM domain protein [Bacteroides fluxus YIT 12057] gi|328530640|gb|EGF57498.1| radical SAM domain protein [Bacteroides fluxus YIT 12057] Length = 181 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 76/209 (36%), Positives = 104/209 (49%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFIRFSGCNL-----------KCSFCDTQH-----EEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + D++ + + G+ +LTGGEP L +D + L++ G + +ETNGT Sbjct: 45 CLMSDDEIMEEV------GKYPAATVILTGGEPSLWIDGEFVDRLHRAGKYVCIETNGTR 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G L I E+K+V+ +++ Y F LQP Sbjct: 99 LLPGNIDWVTCSPKQGTRLGIARMDEVKVVYEGQDIT--GYEQLPAAHFFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 N + ++PKWRLS+QTHK I IR Sbjct: 153 NNIGETVDCVMRHPKWRLSLQTHKLIDIR 181 >gi|325299596|ref|YP_004259513.1| Radical SAM domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324319149|gb|ADY37040.1| Radical SAM domain protein [Bacteroides salanitronis DSM 18170] Length = 181 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 80/208 (38%), Positives = 113/208 (54%), Gaps = 28/208 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG HAG AVF RFSGCNL +C FCDT G Sbjct: 1 MRKINEIFYSLQGEGAHAGTPAVFVRFSGCNL-----------KCIFCDTSH-----ESG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +++ + + + R ++TGGEP L +D L+ L+K G +AVETNGT Sbjct: 45 TEMGDEEIIEEV------CKYPCRMVIMTGGEPGLWIDDALVDLLHKAGKYVAVETNGTQ 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+ +DW+ SPK G L+++ E+K+V+ +VSP Y+ + + LQP Sbjct: 99 VLPEAVDWVTCSPKEGTVLRVRHIDEVKVVYIGQDVSP--YLLIEAKEHFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +NT I Y ++P+WRLS+QTHK I I Sbjct: 153 QNTEEVIEYIKKHPQWRLSLQTHKLINI 180 >gi|237708545|ref|ZP_04539026.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|265751292|ref|ZP_06087355.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|229457474|gb|EEO63195.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263238188|gb|EEZ23638.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 181 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 76/208 (36%), Positives = 107/208 (51%), Gaps = 28/208 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G Sbjct: 1 MRRINEIFYSLQGEGYHTGIPAVFVRFSGCNL-----------RCPFCDTQH-----EEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + +A + + + +LTGGEP L +D L+ AL+ + +ETNGT Sbjct: 45 TLMSDEDIAMEV------AKYSTQVVILTGGEPGLWIDEKLVDALHHERKYVCIETNGTC 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+ IDW+ SPK G + + E+K+V+ +VS Y+ + LQP Sbjct: 99 RLPENIDWVTCSPKEGAKINLDRIDEVKVVYVGQDVS--AYLDLSASHYFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT I+Y Q+P+WRLS+QTHK + I Sbjct: 153 ANTEEVIAYILQHPEWRLSLQTHKLLQI 180 >gi|198276623|ref|ZP_03209154.1| hypothetical protein BACPLE_02819 [Bacteroides plebeius DSM 17135] gi|198270148|gb|EDY94418.1| hypothetical protein BACPLE_02819 [Bacteroides plebeius DSM 17135] Length = 181 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 82/208 (39%), Positives = 110/208 (52%), Gaps = 28/208 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G Sbjct: 1 MKKINEIFYSLQGEGFHVGTPAVFVRFSGCNL-----------KCEFCDT-----HHEEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + +++ + + + + +LTGGEP L VD LI AL+K G I +ETNGT Sbjct: 45 VMMSDEEIVEKV------CQYPCKTVILTGGEPGLWVDEDLIAALHKAGKYICIETNGTC 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+ IDW+ SPK G L++ E+K+VF +VSP + F + LQP Sbjct: 99 VLPESIDWVTCSPKLGAPLRVNRIDEVKVVFLGQDVSPYLELKASF--YFLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT + Y +P+WRLS+QTHK I I Sbjct: 153 RNTAEVVEYIKSHPQWRLSLQTHKLIDI 180 >gi|268315892|ref|YP_003289611.1| queuosine biosynthesis protein QueE [Rhodothermus marinus DSM 4252] gi|262333426|gb|ACY47223.1| queuosine biosynthesis protein QueE [Rhodothermus marinus DSM 4252] Length = 233 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 101/241 (41%), Positives = 128/241 (53%), Gaps = 40/241 (16%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL------SAQC-RFCDTD 53 M+ Y +KEI+ TLQGEG AGR AVF RF GCNLWSGR++DR A C R+CDTD Sbjct: 1 MRSYRVKEIWKTLQGEGFFAGRPAVFVRFVGCNLWSGRDEDRARDARRTGADCPRWCDTD 60 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 F + Y D+L ++E ++CVLTGGEPLLQ+D L++AL G+ Sbjct: 61 F---RKEGSRAYTADELVAAMQEVG----GPIQFCVLTGGEPLLQLDAALMRALKAAGYF 113 Query: 114 IAVETNGTIEPPQ-----------GIDWICVSPKAGCD-LKIKGGQELKLVFPQVNVSPE 161 +A+ETNGTI + DWI SPK D L ++ ELKLV P + PE Sbjct: 114 VAIETNGTISLREACTDPETGQVVAPDWIVCSPKLPEDRLALEYFDELKLVVP--DYRPE 171 Query: 162 NYIGFD------------FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209 Y F LQP DGP L E A+ +P WR+SVQTHK +G Sbjct: 172 QYARFARRARPHRVGGRRIPLLWLQPEDGPRLAEAQRCAVELALAHPDWRVSVQTHKILG 231 Query: 210 I 210 + Sbjct: 232 V 232 >gi|260599124|ref|YP_003211695.1| hypothetical protein CTU_33320 [Cronobacter turicensis z3032] gi|260218301|emb|CBA33277.1| Uncharacterized protein ygcF [Cronobacter turicensis z3032] Length = 223 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 97/238 (40%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWETLADRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + ++L IE Q R+ V+TGGEP + +PL + Sbjct: 52 VSLFSIIAKTKESDKWGSASPEELLAAIERQ----AYTARHVVITGGEPCIHDLLPLTEL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155 L G+ +ET+GT E W+ VSPK D + E+K + Sbjct: 108 LEAHGYSCQIETSGTHEVRCTTGTWVTVSPKVNMRGGYEVLDQALMRADEIKHPVGRMRD 167 Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E ER +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLARLHDERQRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|242238307|ref|YP_002986488.1| hypothetical protein Dd703_0856 [Dickeya dadantii Ech703] gi|242130364|gb|ACS84666.1| conserved hypothetical protein [Dickeya dadantii Ech703] Length = 224 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 97/237 (40%), Gaps = 41/237 (17%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y I E+F TLQGEG G AVF R GC + C +CDT + Sbjct: 1 MPQYPINEMFQTLQGEGYFTGVPAVFIRLQGCPV-----------GCSWCDTKHTWEKLA 49 Query: 61 KGGRYNVDQLADLIEEQWITG-------------EKEGRYCVLTGGEPLLQVDVPLIQAL 107 + + LA E R+ V+TGGEP + PL AL Sbjct: 50 ERQSSLAEVLAKTAESDVWGAADATEILSSMRELGYTARHVVITGGEPCIHDLTPLTLAL 109 Query: 108 NKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCDL-------KIKGGQELKLVFPQ---V 156 ++GF +ET+GT + W+ VSPK ++ E+K + V Sbjct: 110 EQQGFSTQIETSGTHDVRCSPATWVTVSPKVNMRGGMAVLLSALQRADEIKHPVARERDV 169 Query: 157 NVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + D ++ +LQP+ EE T L I+ C WRLS+QTHK++ I Sbjct: 170 DALDALLARLDDDKSRVVALQPVSQK--EEATRLCIATCIAR-NWRLSMQTHKYLNI 223 >gi|156932742|ref|YP_001436658.1| hypothetical protein ESA_00531 [Cronobacter sakazakii ATCC BAA-894] gi|156530996|gb|ABU75822.1| hypothetical protein ESA_00531 [Cronobacter sakazakii ATCC BAA-894] Length = 223 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 96/238 (40%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWETLADRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L IE Q R+ V+TGGEP + +PL + Sbjct: 52 VSLFSIIAKTKESDKWGAASPEDLLAAIERQ----AYTARHVVITGGEPCIHDLLPLTEL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155 L G+ +ET+GT E W+ VSPK D + E+K + Sbjct: 108 LEAHGYSCQIETSGTHEVRCTTGTWVTVSPKVNMRGGYEVLDQALMRADEIKHPVGRMRD 167 Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E ER +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLARLHDERQRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|152971643|ref|YP_001336752.1| coenzyme PQQ synthesis protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262041519|ref|ZP_06014716.1| radical SAM domain protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330012239|ref|ZP_08307334.1| radical SAM domain protein [Klebsiella sp. MS 92-3] gi|150956492|gb|ABR78522.1| putative coenzyme PQQ synthesis protein, nitrogenase iron-molybdenum domain [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259041080|gb|EEW42154.1| radical SAM domain protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328533879|gb|EGF60548.1| radical SAM domain protein [Klebsiella sp. MS 92-3] Length = 225 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 96/242 (39%), Gaps = 50/242 (20%) Query: 1 MKL-YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-- 57 M + Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 1 MTMQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKL 49 Query: 58 ---------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 + K G + + L +I Q T R+ V+TGGEP + P Sbjct: 50 ADREVSLFSILAKTKESDKWGPASSEDLLAIIGRQGWTA----RHVVITGGEPCIHDLTP 105 Query: 103 LIQALNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL--- 151 L L + GF +ET+GT E W+ VSPK ++ E+K Sbjct: 106 LTSLLEQNGFSCQIETSGTHEVRCSPNTWVTVSPKVNMRGGYDVLSQALQRADEIKHPVG 165 Query: 152 ---VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 ++ E +LQP+ E+ T L I C WRLS+QTHK++ Sbjct: 166 RVRDIEALDELLETLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYL 222 Query: 209 GI 210 I Sbjct: 223 NI 224 >gi|258647408|ref|ZP_05734877.1| NrdG protein [Prevotella tannerae ATCC 51259] gi|260852776|gb|EEX72645.1| NrdG protein [Prevotella tannerae ATCC 51259] Length = 189 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 80/213 (37%), Positives = 109/213 (51%), Gaps = 28/213 (13%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + I EIF +LQGEG ++G ++F RFSGCNL C FCDT Sbjct: 1 MTRFKINEIFYSLQGEGFYSGIASIFIRFSGCNL-----------SCSFCDTQH-----E 44 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 G +Q+ D + ++ VLTGGEP L V LI L+ G + +ETNG Sbjct: 45 TGELMTQEQILDQVTR------FPAKHVVLTGGEPSLFVTKELIDGLHAAGKYVCIETNG 98 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 P+GIDW+ +SPK + +K ELK+VF +P + I + +QP D Sbjct: 99 LHALPEGIDWVTLSPKTAQTI-LKTCNELKVVFTDDTFNPHDEIK--AAHYFIQPCDMGN 155 Query: 181 LEENTNL---AISYCFQNPKWRLSVQTHKFIGI 210 +N + ISY +NP+WRLS+QTHK IGI Sbjct: 156 SIKNNRILASCISYVKENPRWRLSLQTHKMIGI 188 >gi|307132359|ref|YP_003884375.1| hypothetical protein Dda3937_00204 [Dickeya dadantii 3937] gi|306529888|gb|ADM99818.1| conserved protein [Dickeya dadantii 3937] Length = 223 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 101/237 (42%), Gaps = 43/237 (18%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56 LY I E+F TLQGEG G AVF R GC + C +CDT Sbjct: 1 MLYPINEMFQTLQGEGFFTGVPAVFIRLQGCPV-----------GCSWCDTKHTWEKRPE 49 Query: 57 ---------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107 ++ + ++ DLI++ G R+ V+TGGEP + PL QAL Sbjct: 50 RQISLAEVLVKSGESDAWSGSSAGDLIQQIARQG-YTARHVVITGGEPCIHDLTPLTQAL 108 Query: 108 NKRGFEIAVETNGTIEPPQGID-WICVSPKAGC-------DLKIKGGQELKLVFPQ---- 155 ++GF +ET+GT E + W+ VSPK D ++ E+K + Sbjct: 109 EQQGFSTQIETSGTHEVRCSPNCWVTVSPKVNMRGGLAVLDQALQRANEIKHPVARERDI 168 Query: 156 --VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 169 EALDALLARLDDDKARVVALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|238758186|ref|ZP_04619365.1| hypothetical protein yaldo0001_25950 [Yersinia aldovae ATCC 35236] gi|238703516|gb|EEP96054.1| hypothetical protein yaldo0001_25950 [Yersinia aldovae ATCC 35236] Length = 225 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 95/242 (39%), Gaps = 50/242 (20%) Query: 1 MKL-YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-- 57 M++ Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 1 MQMQYPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKE 49 Query: 58 ---------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 + G + QL DL +Q R+ V+TGGEP + P Sbjct: 50 ADREVDMQRIMVKTAESDAWGSASEQQLLDLFIQQG----YTARHVVITGGEPAIYDLFP 105 Query: 103 LIQALNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL--- 151 L L + G+ +ET+GT E W+ VSPK ++ E+K Sbjct: 106 LTSQLEQAGYRCQIETSGTHEVRCSATTWVTVSPKVNMRGGLKVLPQALERADEIKHPVG 165 Query: 152 ---VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + E +LQP+ +E T L I C WRLS+QTHK++ Sbjct: 166 RLRDIEALEALLETLTDDKKRIIALQPISQK--DEATKLCIETCIAR-NWRLSMQTHKYL 222 Query: 209 GI 210 I Sbjct: 223 NI 224 >gi|270264011|ref|ZP_06192279.1| hypothetical protein SOD_f02250 [Serratia odorifera 4Rx13] gi|270042204|gb|EFA15300.1| hypothetical protein SOD_f02250 [Serratia odorifera 4Rx13] Length = 223 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 95/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGFFTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKEANRE 51 Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + G + +QL ++ +Q R+ V+TGGEP + PL Q Sbjct: 52 VDMQRILVKTEESDAWGSASAEQLLAVMRQQG----YTARHVVITGGEPCIYDLTPLTQL 107 Query: 107 LNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKL------V 152 L + G+ +ET+GT E W+ VSPK D ++ E+K Sbjct: 108 LEENGYGCQIETSGTHEIQCSATTWVTVSPKVNMRGGMKVLDQALQRADEVKHPVGRERD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ EE T L I C WRLS+QTHK++ I Sbjct: 168 IEALDALLATLHDEKPRIIALQPISQK--EEATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|260174975|ref|ZP_05761387.1| hypothetical protein BacD2_24170 [Bacteroides sp. D2] gi|315923210|ref|ZP_07919450.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313697085|gb|EFS33920.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 181 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 75/209 (35%), Positives = 107/209 (51%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF ++QGEG G AVF RFSGCNL +C FCDT G Sbjct: 1 MKKINEIFYSIQGEGYRTGTPAVFVRFSGCNL-----------KCPFCDTQHSS-----G 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + +++ + R+ VLTGGEP LQVD I L++ G + +ETNGT+ Sbjct: 45 REMSDEEIIKEV------CFYPTRFVVLTGGEPGLQVDQEFINKLHQAGKFVQIETNGTV 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P GIDWI SPK G + + E+K+V+ ++S Y + LQP Sbjct: 99 PLPIGIDWITCSPKEGSKVFVVNPHEIKVVYTGQDLS--TYEAMTAAVYYLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT I+Y ++PKW+LS+QT K + ++ Sbjct: 153 QNTEEVINYVKEHPKWKLSLQTQKILNVQ 181 >gi|261822768|ref|YP_003260874.1| hypothetical protein Pecwa_3531 [Pectobacterium wasabiae WPP163] gi|261606781|gb|ACX89267.1| conserved hypothetical protein [Pectobacterium wasabiae WPP163] Length = 223 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 98/238 (41%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G AVF R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAVFVRLQGCPV-----------GCSWCDTKHTWDKLAERE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + G + D + L+ +Q R+ V+TGGEP + PL Sbjct: 52 TSLDLVLVKTEESDAWGAASADDILALMVQQG----YTARHIVITGGEPCIHDLAPLTLQ 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155 L K+GF +ET+GT + W+ VSPK D ++ E+K + Sbjct: 108 LEKQGFSCQIETSGTHDVRCSPKTWVTVSPKVNMRGGMKVLDQALQRADEIKHPVARERD 167 Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + D ++ +LQP+ E+ T L I+ C WRLS+QTHK++ I Sbjct: 168 IEALDALLARLDDDKPRIVALQPISQK--EDATKLCIATCIAR-NWRLSMQTHKYLNI 222 >gi|227329734|ref|ZP_03833758.1| hypothetical protein PcarcW_21303 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 223 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 97/238 (40%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G AVF R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAVFVRLQGCPV-----------GCSWCDTKHTWDKLAERE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + G + D + L+ ++ R+ V+TGGEP + PL Sbjct: 52 TSLDQVLVKTEESDAWGAASADDILALMAQEG----YTARHIVITGGEPCIHDLAPLTLQ 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155 L K+GF +ET+GT + W+ VSPK D ++ E+K + Sbjct: 108 LEKQGFSCQIETSGTHDVRCSPKTWVTVSPKVNMRGGMKVLDQALQRADEIKHPVARERD 167 Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + D ++ +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDALLARLDDDKPRIVALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|315607677|ref|ZP_07882671.1| GntS protein [Prevotella buccae ATCC 33574] gi|315250613|gb|EFU30608.1| GntS protein [Prevotella buccae ATCC 33574] Length = 210 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 115/226 (50%), Gaps = 35/226 (15%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK Y I EIF +LQGEG + GR AVF RFSGCNL C FCDTDF Sbjct: 5 MKRYRINEIFYSLQGEGRNTGRAAVFVRFSGCNL-----------ACSFCDTDFRAY--- 50 Query: 61 KGGRYNVDQLADLIE-----------EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 D++ + ++ + + + VLTGGEP LQVD LI AL+ Sbjct: 51 --REMTSDEVVNTVKGILPSFVDNRSGEGVGTARSSVLVVLTGGEPTLQVDFDLIDALHH 108 Query: 110 RGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 GF E+A+E+NGT EPP +DW+ VSPK + ELK +F + + + I DF Sbjct: 109 AGFPEVAMESNGTKEPPPNLDWLTVSPKEQVSVN--RCNELKCLFDESGRADDCGIRADF 166 Query: 169 ERFSLQPM---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + LQP D E Y Q+PKW+LS+QTHK IG + Sbjct: 167 --YYLQPCDTGDPVRNAEIIAACTEYIKQHPKWQLSLQTHKLIGFK 210 >gi|295097341|emb|CBK86431.1| Organic radical activating enzymes [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 223 Score = 237 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 98/238 (41%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q T R+ V+TGGEP + +PL + Sbjct: 52 VSLFSILAKTKESDKWGAGSAEDLLAIISRQGWTA----RHVVITGGEPCIHDLMPLTEL 107 Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155 L K G+ +ET+GT E W+ VSPK ++ E+K + Sbjct: 108 LEKNGYSCQIETSGTHEVRCSHSTWVTVSPKVNMRGGYDVLSQALERADEIKHPVGRVRD 167 Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E E+ +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLTDEKQRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|237729740|ref|ZP_04560221.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226908346|gb|EEH94264.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 223 Score = 237 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 96/238 (40%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLEDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLYSILAKTKESDKWGAASSEDLLAVISRQG----YTARHVVITGGEPCIHDLMPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155 L K GF +ET+GT E W+ VSPK ++ E+K + Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRD 167 Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E ++ +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222 >gi|227114089|ref|ZP_03827745.1| hypothetical protein PcarbP_14034 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 223 Score = 237 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 98/238 (41%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G AVF R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAVFVRLQGCPV-----------GCSWCDTKHTWDKLAERE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + G + D + L+ +Q R+ V+TGGEP + PL Sbjct: 52 TSLDQVLVKTEESDAWGAASADDILALMVQQG----YTARHIVITGGEPCIHDLAPLTLQ 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155 L K+GF +ET+GT + W+ VSPK D ++ E+K + Sbjct: 108 LEKQGFSCQIETSGTHDVRCSPKTWVTVSPKVNMRGGMKVLDQALQRADEIKHPVARERD 167 Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + D ++ +LQP+ ++ T L I+ C WRLS+QTHK++ I Sbjct: 168 IEALDALLARLDDDKPRIVALQPISQK--DDATKLCIATCIAR-NWRLSMQTHKYLNI 222 >gi|253689736|ref|YP_003018926.1| hypothetical protein PC1_3374 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756314|gb|ACT14390.1| conserved hypothetical protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 223 Score = 237 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 98/238 (41%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G AVF R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAVFVRLQGCPV-----------GCSWCDTKHTWDKLAERE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + G + D + L+ +Q R+ V+TGGEP + PL Sbjct: 52 TSLDQVLVKTEESDAWGAASADDILALMTQQG----YTARHIVITGGEPCIHDLTPLTLQ 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155 L K+GF +ET+GT + W+ VSPK D ++ E+K + Sbjct: 108 LEKQGFSCQIETSGTHDVRCSPKTWVTVSPKVNMRGGMKVLDQALQRADEIKHPVARERD 167 Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + D ++ +LQP+ ++ T L I+ C WRLS+QTHK++ I Sbjct: 168 IEALDALLARLDDDKPRIVALQPISQK--DDATKLCIATCIAR-NWRLSMQTHKYLNI 222 >gi|157369053|ref|YP_001477042.1| radical SAM domain-containing protein [Serratia proteamaculans 568] gi|157320817|gb|ABV39914.1| Radical SAM domain protein [Serratia proteamaculans 568] Length = 223 Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 94/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGFFTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKEANRE 51 Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + G + +QL +I +Q R+ V+TGGEP + PL + Sbjct: 52 VDMQRILVKTEESDAWGSASAEQLLAVIRQQG----YTARHVVITGGEPCIYDLTPLTEL 107 Query: 107 LNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKL------V 152 L + G+ +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEEHGYGCQIETSGTHEIQCSAKTWVTVSPKVNMRGGMKVLSQALQRADEVKHPVGRERD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ EE T L I C WRLS+QTHK++ I Sbjct: 168 IEALDALLATLHDEKPRIIALQPISQK--EEATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|50122475|ref|YP_051642.1| hypothetical protein ECA3554 [Pectobacterium atrosepticum SCRI1043] gi|49613001|emb|CAG76452.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 223 Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 98/238 (41%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G AVF R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAVFVRLQGCPV-----------GCSWCDTKHTWDKLAERE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + G + D + L+ +Q R+ V+TGGEP + PL Sbjct: 52 TSLDQVLVKTEESDAWGAASADDILALMAQQG----YTARHIVITGGEPCIHDLAPLTLQ 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155 L K+GF +ET+GT + W+ VSPK D ++ E+K + Sbjct: 108 LEKQGFSCQIETSGTHDVRCSPKTWVTVSPKVNMRGGMKVLDQALQRADEIKHPVARERD 167 Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + D ++ +LQP+ ++ T L I+ C WRLS+QTHK++ I Sbjct: 168 IEALDTLLARLDDDKPRIVALQPISQK--DDATKLCIATCIAR-NWRLSMQTHKYLNI 222 >gi|288924671|ref|ZP_06418608.1| radical SAM [Prevotella buccae D17] gi|288338458|gb|EFC76807.1| radical SAM [Prevotella buccae D17] Length = 206 Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 115/226 (50%), Gaps = 35/226 (15%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK Y I EIF +LQGEG + GR AVF RFSGCNL C FCDTDF Sbjct: 1 MKRYRINEIFYSLQGEGRNTGRAAVFVRFSGCNL-----------ACSFCDTDFRAY--- 46 Query: 61 KGGRYNVDQLADLIE-----------EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 D++ + ++ + + + VLTGGEP LQVD LI AL+ Sbjct: 47 --REMTSDEVVNTVKGILPSFVDNRSGEGVGTARSSVLVVLTGGEPTLQVDFDLIDALHH 104 Query: 110 RGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 GF E+A+E+NGT EPP +DW+ VSPK + ELK +F + + + I DF Sbjct: 105 AGFPEVAMESNGTKEPPPNLDWLTVSPKEQVSVN--RCNELKCLFDESGRADDCGIRADF 162 Query: 169 ERFSLQPM---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + LQP D E Y Q+PKW+LS+QTHK IG + Sbjct: 163 --YYLQPCDTGDPVRNAEIIAACTEYIKQHPKWQLSLQTHKLIGFK 206 >gi|296104445|ref|YP_003614591.1| radical SAM domain-containing protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058904|gb|ADF63642.1| radical SAM domain-containing protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 223 Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 97/238 (40%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q T R+ V+TGGEP + PL + Sbjct: 52 VSLFSVLAKTKESDKWGAGSAEDLLAIIGRQGWTA----RHVVITGGEPCIHDLTPLTEL 107 Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155 L K G+ +ET+GT E W+ VSPK ++ E+K + Sbjct: 108 LEKNGYSCQIETSGTHEVRCSHTTWVTVSPKVNMRGGYDVLSQALERADEIKHPVGRVRD 167 Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E E+ +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLTDEKQRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|16761723|ref|NP_457340.1| hypothetical protein STY3080 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766257|ref|NP_461872.1| hypothetical protein STM2951 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143207|ref|NP_806549.1| hypothetical protein t2852 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161615872|ref|YP_001589837.1| hypothetical protein SPAB_03664 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550190|ref|ZP_02343947.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993197|ref|ZP_02574292.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231033|ref|ZP_02656091.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168242700|ref|ZP_02667632.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261911|ref|ZP_02683884.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463900|ref|ZP_02697817.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820338|ref|ZP_02832338.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443979|ref|YP_002042196.1| hypothetical protein SNSL254_A3167 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448254|ref|YP_002046911.1| radical SAM domain-containing protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472830|ref|ZP_03078814.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197250818|ref|YP_002147853.1| radical SAM domain-containing protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197261663|ref|ZP_03161737.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198243481|ref|YP_002216919.1| radical SAM domain-containing protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387574|ref|ZP_03214186.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205353891|ref|YP_002227692.1| hypothetical protein SG2855 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858211|ref|YP_002244862.1| hypothetical protein SEN2790 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213022667|ref|ZP_03337114.1| hypothetical protein Salmonelentericaenterica_08538 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213163461|ref|ZP_03349171.1| hypothetical protein Salmoneentericaenterica_26915 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424925|ref|ZP_03357675.1| hypothetical protein SentesTyphi_03996 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213648292|ref|ZP_03378345.1| hypothetical protein SentesTy_13994 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852988|ref|ZP_03382520.1| hypothetical protein SentesT_09066 [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224584735|ref|YP_002638533.1| hypothetical protein SPC_3001 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238909725|ref|ZP_04653562.1| hypothetical protein SentesTe_01135 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289811290|ref|ZP_06541919.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289829811|ref|ZP_06547326.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25511883|pir||AB0859 conserved hypothetical protein STY3080 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421502|gb|AAL21831.1| putative organic radical activating enzymes [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504024|emb|CAD06057.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138840|gb|AAO70409.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161365236|gb|ABX69004.1| hypothetical protein SPAB_03664 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402642|gb|ACF62864.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406558|gb|ACF66777.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194459194|gb|EDX48033.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195633215|gb|EDX51629.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197214521|gb|ACH51918.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197239918|gb|EDY22538.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197937997|gb|ACH75330.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604672|gb|EDZ03217.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205273672|emb|CAR38662.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324832|gb|EDZ12671.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328757|gb|EDZ15521.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334576|gb|EDZ21340.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338143|gb|EDZ24907.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342895|gb|EDZ29659.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349084|gb|EDZ35715.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710014|emb|CAR34369.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469262|gb|ACN47092.1| hypothetical protein SPC_3001 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248086|emb|CBG25921.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995084|gb|ACY89969.1| hypothetical protein STM14_3556 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159510|emb|CBW19029.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913972|dbj|BAJ37946.1| hypothetical protein STMDT12_C30030 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087368|emb|CBY97133.1| probable molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225630|gb|EFX50684.1| Queuosine Biosynthesis QueE Radical SAM [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131307|gb|ADX18737.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326624683|gb|EGE31028.1| Radical SAM domain containing protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629003|gb|EGE35346.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 223 Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 93/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLFSILAKTKESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L K GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|168235995|ref|ZP_02661053.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736116|ref|YP_002115902.1| radical SAM domain-containing protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204928010|ref|ZP_03219210.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194711618|gb|ACF90839.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290769|gb|EDY30123.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204322332|gb|EDZ07529.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 223 Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 94/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q + R+ V+TGGEP + +PL Sbjct: 52 VSLFSILAKTKESDKWGAASSEDLLAVINRQ----DYTARHVVITGGEPCIHDLMPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L K GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|238896239|ref|YP_002920975.1| putative coenzyme PQQ synthesis protein [Klebsiella pneumoniae NTUH-K2044] gi|238548557|dbj|BAH64908.1| putative coenzyme PQQ synthesis protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 223 Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 94/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q T R+ V+TGGEP + PL Sbjct: 52 VSLFSILAKTKESDKWGPASSEDLLAIIGRQGWTA----RHVVITGGEPCIHDLTPLTSL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L + GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEQNGFSCQIETSGTHEVRCSPNTWVTVSPKVNMRGGYDVLSQALQRADEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ E +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLETLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222 >gi|56414895|ref|YP_151970.1| hypothetical protein SPA2807 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363823|ref|YP_002143460.1| hypothetical protein SSPA2615 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129152|gb|AAV78658.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095300|emb|CAR60857.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 223 Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 93/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLYSILAKIKESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L K GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|198274527|ref|ZP_03207059.1| hypothetical protein BACPLE_00675 [Bacteroides plebeius DSM 17135] gi|198272581|gb|EDY96850.1| hypothetical protein BACPLE_00675 [Bacteroides plebeius DSM 17135] Length = 181 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 70/209 (33%), Positives = 104/209 (49%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + EIF ++QGEG H G AVF RFSGCNL +C FCDT G Sbjct: 1 MKKVNEIFYSIQGEGYHTGTPAVFVRFSGCNL-----------KCPFCDTQH-----EDG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + +++ + G+ +LTGGEP L +D + L++ G + +ETNGT Sbjct: 45 ILMSDEEILSEV------GKYPAVMVILTGGEPSLWIDREFVDRLHRIGKYVCIETNGTR 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G + + E+K+V+ ++S Y + LQP Sbjct: 99 SLPNNIDWVTCSPKEGSNAIVVNPHEIKVVYTGQDLS--TYEEMTAAVYYLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT I Y ++PKW+LS+QT K + +R Sbjct: 153 QNTEEVIDYIKKHPKWKLSLQTQKILNVR 181 >gi|261342207|ref|ZP_05970065.1| radical SAM domain protein [Enterobacter cancerogenus ATCC 35316] gi|288315541|gb|EFC54479.1| radical SAM domain protein [Enterobacter cancerogenus ATCC 35316] Length = 223 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 98/238 (41%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G N + L +I Q T R+ V+TGGEP + +PL + Sbjct: 52 VSLFSILAKTKESDKWGAGNAEDLLAIIGRQGWTA----RHVVITGGEPCIHDLMPLTEL 107 Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155 L K G+ +ET+GT E W+ VSPK ++ E+K + Sbjct: 108 LEKNGYSCQIETSGTHEVRCSHTTWVTVSPKVNMRGGYDVLSQALERADEIKHPVGRVRD 167 Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E E+ +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLTDEKQRIIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|288933817|ref|YP_003437876.1| radical SAM protein [Klebsiella variicola At-22] gi|290511103|ref|ZP_06550472.1| queuosine biosynthesis protein QueE [Klebsiella sp. 1_1_55] gi|288888546|gb|ADC56864.1| Radical SAM domain protein [Klebsiella variicola At-22] gi|289776096|gb|EFD84095.1| queuosine biosynthesis protein QueE [Klebsiella sp. 1_1_55] Length = 223 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 94/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q T R+ V+TGGEP + PL Sbjct: 52 VSLFSILAKTKESDKWGPASSEDLLAIIGRQGWTA----RHVVITGGEPCIHDLTPLTSL 107 Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL------V 152 L + GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEQNGFSCQIETSGTHEVRCSHNTWVTVSPKVNMRGGYDVLSQALQRADEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ E +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLETLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222 >gi|304399225|ref|ZP_07381092.1| Radical SAM domain protein [Pantoea sp. aB] gi|304353279|gb|EFM17659.1| Radical SAM domain protein [Pantoea sp. aB] Length = 223 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 99/238 (41%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y I E+F TLQGEG + G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKRTDRE 51 Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 ++ G + L + I +Q T R+ V+TGGEP + PL A Sbjct: 52 TSLGDILIKTVESDAWGDADAATLVNAIAQQGWTA----RHVVITGGEPAIYDLRPLTTA 107 Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155 L + GF+ +ET+GT E W+ VSPK + E+K + Sbjct: 108 LEQHGFQCQIETSGTHEIHCSEQTWVTVSPKVNMRGGYDVLPQALSRADEIKHPVARERD 167 Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 V+ G D + +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 168 VDALDLLLAGIDDTKARIIALQPISRK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|322614241|gb|EFY11173.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620945|gb|EFY17803.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624008|gb|EFY20842.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628253|gb|EFY25042.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633372|gb|EFY30114.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636051|gb|EFY32759.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639387|gb|EFY36075.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643751|gb|EFY40302.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648214|gb|EFY44680.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656959|gb|EFY53244.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658025|gb|EFY54293.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664126|gb|EFY60325.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322673792|gb|EFY69891.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677866|gb|EFY73929.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681040|gb|EFY77073.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685637|gb|EFY81631.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194776|gb|EFZ79963.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200478|gb|EFZ85557.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323205060|gb|EFZ90043.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207739|gb|EFZ92685.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323214808|gb|EFZ99556.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222537|gb|EGA06902.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226417|gb|EGA10625.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230704|gb|EGA14822.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234945|gb|EGA19031.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238984|gb|EGA23034.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244658|gb|EGA28664.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247274|gb|EGA31240.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251806|gb|EGA35671.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257493|gb|EGA41183.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263278|gb|EGA46815.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267530|gb|EGA51014.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272719|gb|EGA56125.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 223 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 93/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLFSILAKTKESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L K GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEKSGFSCQIETSGTHEVCCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|283786677|ref|YP_003366542.1| hypothetical protein ROD_30371 [Citrobacter rodentium ICC168] gi|282950131|emb|CBG89767.1| conserved hypothetical protein [Citrobacter rodentium ICC168] Length = 223 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 93/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLEDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLFSILAKTKESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLTAL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L K GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDILSQALERANEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|62181454|ref|YP_217871.1| hypothetical protein SC2884 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129087|gb|AAX66790.1| putative Organic radical activating enzymes [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715938|gb|EFZ07509.1| Radical SAM [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 223 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 92/238 (38%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLFSILAKTKESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L K GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 168 IEALGELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|191166820|ref|ZP_03028646.1| conserved hypothetical protein [Escherichia coli B7A] gi|190903191|gb|EDV62914.1| conserved hypothetical protein [Escherichia coli B7A] Length = 223 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLFSILAKTKESDKWGSASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L K GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LKKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|188534838|ref|YP_001908635.1| hypothetical protein ETA_27180 [Erwinia tasmaniensis Et1/99] gi|188029880|emb|CAO97764.1| Conserved hypothetical protein [Erwinia tasmaniensis Et1/99] Length = 223 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 96/238 (40%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y I E+F TLQGEG + G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGVYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLANRE 51 Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 ++ G + L + I T ++ V+TGGEP + VPL A Sbjct: 52 TSLGDILLKTVETDAWGAADAPALLETIRRHGWTA----KHIVVTGGEPCIHDLVPLTAA 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL-VFPQVN 157 L GF +ET+GT E W+ VSPK + + E+K V Q + Sbjct: 108 LQDAGFSCQIETSGTHEVSCTAQTWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQRD 167 Query: 158 VSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 V + + +LQP+ + T L I C WRLS+QTHK++ I Sbjct: 168 VEALDELLGTLNDNKARIIALQPISQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222 >gi|206580457|ref|YP_002236871.1| radical SAM domain protein [Klebsiella pneumoniae 342] gi|206569515|gb|ACI11291.1| radical SAM domain protein [Klebsiella pneumoniae 342] Length = 223 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 94/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q T R+ V+TGGEP + PL Sbjct: 52 VSLFSILAKTKESDKWGPASSEDLLAIIGRQGWTA----RHVVITGGEPCIHDLTPLTSL 107 Query: 107 LNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKL------V 152 L + GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEQNGFSCQIETSGTHEVCCSHNTWVTVSPKVNMRGGYDVLSQALQRADEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ E +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLETLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222 >gi|74313345|ref|YP_311764.1| hypothetical protein SSON_2930 [Shigella sonnei Ss046] gi|73856822|gb|AAZ89529.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|323167196|gb|EFZ52913.1| radical SAM superfamily protein [Shigella sonnei 53G] Length = 223 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLFSILAKTKESDKWGAASSEDLLAVISRQG----YTARHVVITGGEPCIHDLLPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L K GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|26249173|ref|NP_755213.1| hypothetical protein c3335 [Escherichia coli CFT073] gi|91212137|ref|YP_542123.1| hypothetical protein UTI89_C3140 [Escherichia coli UTI89] gi|110642915|ref|YP_670645.1| hypothetical protein ECP_2755 [Escherichia coli 536] gi|117625003|ref|YP_853991.1| hypothetical protein APECO1_3756 [Escherichia coli APEC O1] gi|191171179|ref|ZP_03032729.1| conserved hypothetical protein [Escherichia coli F11] gi|215488094|ref|YP_002330525.1| hypothetical protein E2348C_3044 [Escherichia coli O127:H6 str. E2348/69] gi|218559762|ref|YP_002392675.1| hypothetical protein ECS88_3041 [Escherichia coli S88] gi|218690896|ref|YP_002399108.1| hypothetical protein ECED1_3225 [Escherichia coli ED1a] gi|218701268|ref|YP_002408897.1| hypothetical protein ECIAI39_2968 [Escherichia coli IAI39] gi|227888313|ref|ZP_04006118.1| radical SAM domain protein [Escherichia coli 83972] gi|237706601|ref|ZP_04537082.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|300976266|ref|ZP_07173363.1| radical SAM domain protein [Escherichia coli MS 200-1] gi|300976766|ref|ZP_07173583.1| radical SAM domain protein [Escherichia coli MS 45-1] gi|301027570|ref|ZP_07190901.1| radical SAM domain protein [Escherichia coli MS 69-1] gi|301049468|ref|ZP_07196426.1| radical SAM domain protein [Escherichia coli MS 185-1] gi|306812345|ref|ZP_07446543.1| hypothetical protein ECNC101_10539 [Escherichia coli NC101] gi|312964958|ref|ZP_07779198.1| uncharacterized protein ygcF [Escherichia coli 2362-75] gi|331658886|ref|ZP_08359828.1| putative Organic radical activating enzyme [Escherichia coli TA206] gi|26109580|gb|AAN81783.1|AE016765_185 Hypothetical protein ygcF [Escherichia coli CFT073] gi|50250397|emb|CAG25841.1| hypothetical protein ygcF [Escherichia coli] gi|91073711|gb|ABE08592.1| hypothetical protein YgcF [Escherichia coli UTI89] gi|110344507|gb|ABG70744.1| hypothetical protein YgcF [Escherichia coli 536] gi|115514127|gb|ABJ02202.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|190908479|gb|EDV68068.1| conserved hypothetical protein [Escherichia coli F11] gi|215266166|emb|CAS10592.1| predicted protein [Escherichia coli O127:H6 str. E2348/69] gi|218366531|emb|CAR04284.1| conserved hypothetical protein [Escherichia coli S88] gi|218371254|emb|CAR19087.1| conserved hypothetical protein [Escherichia coli IAI39] gi|218428460|emb|CAR09385.2| conserved hypothetical protein [Escherichia coli ED1a] gi|222034465|emb|CAP77207.1| Uncharacterized protein ygcF [Escherichia coli LF82] gi|226899641|gb|EEH85900.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|227834582|gb|EEJ45048.1| radical SAM domain protein [Escherichia coli 83972] gi|281179780|dbj|BAI56110.1| conserved hypothetical protein [Escherichia coli SE15] gi|294493229|gb|ADE91985.1| conserved hypothetical protein [Escherichia coli IHE3034] gi|300298699|gb|EFJ55084.1| radical SAM domain protein [Escherichia coli MS 185-1] gi|300308611|gb|EFJ63131.1| radical SAM domain protein [Escherichia coli MS 200-1] gi|300394899|gb|EFJ78437.1| radical SAM domain protein [Escherichia coli MS 69-1] gi|300409952|gb|EFJ93490.1| radical SAM domain protein [Escherichia coli MS 45-1] gi|305854383|gb|EFM54821.1| hypothetical protein ECNC101_10539 [Escherichia coli NC101] gi|307554747|gb|ADN47522.1| conserved hypothetical protein [Escherichia coli ABU 83972] gi|307625657|gb|ADN69961.1| hypothetical protein UM146_02700 [Escherichia coli UM146] gi|312290514|gb|EFR18394.1| uncharacterized protein ygcF [Escherichia coli 2362-75] gi|312947301|gb|ADR28128.1| hypothetical protein NRG857_13575 [Escherichia coli O83:H1 str. NRG 857C] gi|315289297|gb|EFU48692.1| radical SAM domain protein [Escherichia coli MS 110-3] gi|315293738|gb|EFU53090.1| radical SAM domain protein [Escherichia coli MS 153-1] gi|315298732|gb|EFU57986.1| radical SAM domain protein [Escherichia coli MS 16-3] gi|320194912|gb|EFW69541.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli WV_060327] gi|323188807|gb|EFZ74092.1| hypothetical protein ECRN5871_3230 [Escherichia coli RN587/1] gi|323951009|gb|EGB46885.1| queuosine biosynthesis protein QueE [Escherichia coli H252] gi|323957215|gb|EGB52939.1| queuosine biosynthesis protein QueE [Escherichia coli H263] gi|324005736|gb|EGB74955.1| radical SAM domain protein [Escherichia coli MS 57-2] gi|324015485|gb|EGB84704.1| radical SAM domain protein [Escherichia coli MS 60-1] gi|330908805|gb|EGH37319.1| queuosine Biosynthesis QueE Radical SAM [Escherichia coli AA86] gi|331053468|gb|EGI25497.1| putative Organic radical activating enzyme [Escherichia coli TA206] Length = 223 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 93/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L K GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222 >gi|254246872|ref|ZP_04940193.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] gi|124871648|gb|EAY63364.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] Length = 207 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 88/150 (58%), Positives = 106/150 (70%), Gaps = 2/150 (1%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60 Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GG++ + L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG Sbjct: 61 GGKFKDAAALVATIAGLWPEGEA-NRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 ++ + IDWICVSPKA L + G ELK Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELK 149 >gi|293412124|ref|ZP_06654847.1| conserved hypothetical protein [Escherichia coli B354] gi|291468895|gb|EFF11386.1| conserved hypothetical protein [Escherichia coli B354] Length = 223 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L K GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYKVLSQALERANEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIDTCIAR-NWRLSMQTHKYLNI 222 >gi|193071786|ref|ZP_03052680.1| conserved hypothetical protein [Escherichia coli E110019] gi|300906700|ref|ZP_07124387.1| radical SAM domain protein [Escherichia coli MS 84-1] gi|300920372|ref|ZP_07136808.1| radical SAM domain protein [Escherichia coli MS 115-1] gi|301304544|ref|ZP_07210654.1| radical SAM domain protein [Escherichia coli MS 124-1] gi|192954902|gb|EDV85411.1| conserved hypothetical protein [Escherichia coli E110019] gi|300401505|gb|EFJ85043.1| radical SAM domain protein [Escherichia coli MS 84-1] gi|300412622|gb|EFJ95932.1| radical SAM domain protein [Escherichia coli MS 115-1] gi|300840148|gb|EFK67908.1| radical SAM domain protein [Escherichia coli MS 124-1] gi|315256635|gb|EFU36603.1| radical SAM domain protein [Escherichia coli MS 85-1] gi|323172921|gb|EFZ58552.1| hypothetical protein ECLT68_2322 [Escherichia coli LT-68] Length = 223 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLFSILAKTKESDKWGAASSEDLLAVISRQG----YTARHVVITGGEPCIHDLLPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L K GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|170018977|ref|YP_001723931.1| hypothetical protein EcolC_0935 [Escherichia coli ATCC 8739] gi|312973008|ref|ZP_07787181.1| uncharacterized protein ygcF [Escherichia coli 1827-70] gi|169753905|gb|ACA76604.1| conserved hypothetical protein [Escherichia coli ATCC 8739] gi|310332950|gb|EFQ00164.1| uncharacterized protein ygcF [Escherichia coli 1827-70] gi|323941542|gb|EGB37724.1| queuosine biosynthesis protein QueE [Escherichia coli E482] Length = 223 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLFSILAKTKESDKWGAASSEDLLAIIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L K GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|218555326|ref|YP_002388239.1| hypothetical protein ECIAI1_2883 [Escherichia coli IAI1] gi|300820561|ref|ZP_07100712.1| radical SAM domain protein [Escherichia coli MS 119-7] gi|309795241|ref|ZP_07689660.1| radical SAM domain protein [Escherichia coli MS 145-7] gi|331669510|ref|ZP_08370356.1| putative Organic radical activating enzyme [Escherichia coli TA271] gi|331678753|ref|ZP_08379427.1| putative Organic radical activating enzyme [Escherichia coli H591] gi|218362094|emb|CAQ99703.1| conserved hypothetical protein [Escherichia coli IAI1] gi|300526825|gb|EFK47894.1| radical SAM domain protein [Escherichia coli MS 119-7] gi|308121212|gb|EFO58474.1| radical SAM domain protein [Escherichia coli MS 145-7] gi|320202418|gb|EFW76988.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli EC4100B] gi|331063178|gb|EGI35091.1| putative Organic radical activating enzyme [Escherichia coli TA271] gi|331073583|gb|EGI44904.1| putative Organic radical activating enzyme [Escherichia coli H591] Length = 223 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLFSILAKTKESDKWGSASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L K GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|331664336|ref|ZP_08365242.1| putative Organic radical activating enzyme [Escherichia coli TA143] gi|284922713|emb|CBG35801.1| conserved hypothetical protein [Escherichia coli 042] gi|331058267|gb|EGI30248.1| putative Organic radical activating enzyme [Escherichia coli TA143] Length = 223 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L K GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIDTCIAR-NWRLSMQTHKYLNI 222 >gi|251788459|ref|YP_003003180.1| hypothetical protein Dd1591_0822 [Dickeya zeae Ech1591] gi|247537080|gb|ACT05701.1| conserved hypothetical protein [Dickeya zeae Ech1591] Length = 223 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 104/238 (43%), Gaps = 44/238 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56 M+ Y I E+F TLQGEG G AVF R GC + C +CDT Sbjct: 1 MR-YPINEMFQTLQGEGFFTGVPAVFIRLQGCPV-----------GCSWCDTKHTWERLP 48 Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 ++ + ++ +L+++ + G ++ V+TGGEP + PL QA Sbjct: 49 DRQIPLADILVKSGESDAWSHSSSEELLQQMRLQG-YSAKHIVITGGEPCIHDLTPLTQA 107 Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155 L ++GF +ET+GT E W+ VSPK D ++ E+K + Sbjct: 108 LEQQGFSTQIETSGTHEVRCSSACWVTVSPKVNMRGGLAVLDQALRRADEIKHPVARERD 167 Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + D ++ +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDALLARLDDDKPRVVALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|110806555|ref|YP_690075.1| hypothetical protein SFV_2678 [Shigella flexneri 5 str. 8401] gi|110616103|gb|ABF04770.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] Length = 223 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHAWEKLEDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L K GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|300937751|ref|ZP_07152551.1| radical SAM domain protein [Escherichia coli MS 21-1] gi|300457230|gb|EFK20723.1| radical SAM domain protein [Escherichia coli MS 21-1] Length = 223 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 93/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I EIF TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEIFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L K GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|311278265|ref|YP_003940496.1| Radical SAM domain-containing protein [Enterobacter cloacae SCF1] gi|308747460|gb|ADO47212.1| Radical SAM domain protein [Enterobacter cloacae SCF1] Length = 223 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 91/238 (38%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDMLEDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + L I Q T R+ V+TGGEP + PL Sbjct: 52 VSLFSILAKTKESDKWGAATAEDLLTAITRQGWTA----RHVVITGGEPCIHDLTPLTAL 107 Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL------V 152 L + G+ +ET+GT E W+ VSPK + E+K Sbjct: 108 LEQNGYSCQIETSGTHEVRCSHSTWVTVSPKVNMRGGFEVLSQALHRADEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ E +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLETLSDDKQRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|238786213|ref|ZP_04630161.1| hypothetical protein yberc0001_11680 [Yersinia bercovieri ATCC 43970] gi|238712877|gb|EEQ04941.1| hypothetical protein yberc0001_11680 [Yersinia bercovieri ATCC 43970] Length = 223 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 93/240 (38%), Gaps = 49/240 (20%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57 LY I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 1 MLYPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKEAD 49 Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104 + G + QL + +Q R+ V+TGGEP + +PL Sbjct: 50 REVDMQRIMVKTAESDAWGSASEQQLLAIFSQQG----YTARHVVITGGEPAIYDLLPLT 105 Query: 105 QALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKL----- 151 L + G+ +ET+GT E W+ VSPK ++ E+K Sbjct: 106 SVLEQAGYSCQIETSGTHEVQCSAATWVTVSPKVKMRGGLKILPQALQRADEIKHPVGRL 165 Query: 152 -VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + V +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 166 RDIEALEVLLATLHDDKKRIIALQPISQK--DDATKLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|82545074|ref|YP_409021.1| hypothetical protein SBO_2656 [Shigella boydii Sb227] gi|187733920|ref|YP_001881485.1| hypothetical protein SbBS512_E3099 [Shigella boydii CDC 3083-94] gi|193065022|ref|ZP_03046097.1| conserved hypothetical protein [Escherichia coli E22] gi|209920225|ref|YP_002294309.1| hypothetical protein ECSE_3034 [Escherichia coli SE11] gi|256019438|ref|ZP_05433303.1| hypothetical protein ShiD9_11027 [Shigella sp. D9] gi|260845423|ref|YP_003223201.1| hypothetical protein ECO103_3320 [Escherichia coli O103:H2 str. 12009] gi|260856887|ref|YP_003230778.1| hypothetical protein ECO26_3847 [Escherichia coli O26:H11 str. 11368] gi|260869456|ref|YP_003235858.1| hypothetical protein ECO111_3501 [Escherichia coli O111:H- str. 11128] gi|300815807|ref|ZP_07096031.1| radical SAM domain protein [Escherichia coli MS 107-1] gi|300923910|ref|ZP_07139923.1| radical SAM domain protein [Escherichia coli MS 182-1] gi|301325508|ref|ZP_07218983.1| radical SAM domain protein [Escherichia coli MS 78-1] gi|81246485|gb|ABB67193.1| conserved hypothetical protein [Shigella boydii Sb227] gi|187430912|gb|ACD10186.1| conserved hypothetical protein [Shigella boydii CDC 3083-94] gi|192927319|gb|EDV81938.1| conserved hypothetical protein [Escherichia coli E22] gi|209913484|dbj|BAG78558.1| conserved hypothetical protein [Escherichia coli SE11] gi|257755536|dbj|BAI27038.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368] gi|257760570|dbj|BAI32067.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009] gi|257765812|dbj|BAI37307.1| conserved predicted protein [Escherichia coli O111:H- str. 11128] gi|300419842|gb|EFK03153.1| radical SAM domain protein [Escherichia coli MS 182-1] gi|300531736|gb|EFK52798.1| radical SAM domain protein [Escherichia coli MS 107-1] gi|300847675|gb|EFK75435.1| radical SAM domain protein [Escherichia coli MS 78-1] gi|320183542|gb|EFW58388.1| Queuosine Biosynthesis QueE Radical SAM [Shigella flexneri CDC 796-83] gi|323155006|gb|EFZ41198.1| radical SAM superfamily protein [Escherichia coli EPECa14] gi|323159909|gb|EFZ45879.1| radical SAM superfamily protein [Escherichia coli E128010] gi|323180206|gb|EFZ65758.1| radical SAM superfamily protein [Escherichia coli 1180] gi|324016296|gb|EGB85515.1| radical SAM domain protein [Escherichia coli MS 117-3] gi|332092167|gb|EGI97245.1| radical SAM superfamily protein [Shigella boydii 3594-74] gi|332102910|gb|EGJ06256.1| conserved hypothetical protein [Shigella sp. D9] Length = 223 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L K GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|317492851|ref|ZP_07951275.1| radical SAM domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918973|gb|EFV40308.1| radical SAM domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 223 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 98/238 (41%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG + G A+F R GC + C +CDT Sbjct: 3 YPINELFQTLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEQLPERE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + G DQL ++ E+ R+ V+TGGEP + PL + Sbjct: 52 IGMNEILIKTAESDAWGSATPDQLLAILHERG----YTARHVVITGGEPCIHDLRPLTEL 107 Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVN 157 LN+ GF +ET+GT E W+ VSPK +K E+K V + + Sbjct: 108 LNQHGFSCQIETSGTHEIRCSDATWVTVSPKVNMKGGMKVLESALIRADEVKHPVARERD 167 Query: 158 VSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + +LQP+ E T L I C WRLS+QTHK++ I Sbjct: 168 IEDLDTLLAVLHDDKQRIIALQPISQK--ESATKLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|157148316|ref|YP_001455635.1| hypothetical protein CKO_04133 [Citrobacter koseri ATCC BAA-895] gi|157085521|gb|ABV15199.1| hypothetical protein CKO_04133 [Citrobacter koseri ATCC BAA-895] Length = 223 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 96/238 (40%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLEDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLYSILAKTKESDKWGAASSEDLLAVISRQG----YTARHVVITGGEPCIHDLMPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155 L K GF +ET+GT E W+ VSPK ++ E+K + Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRD 167 Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E ++ +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLSDDKPRIIALQPISQK--EDATRLCIETCIVR-NWRLSMQTHKYLNI 222 >gi|319642227|ref|ZP_07996886.1| hypothetical protein HMPREF9011_02486 [Bacteroides sp. 3_1_40A] gi|317386083|gb|EFV67003.1| hypothetical protein HMPREF9011_02486 [Bacteroides sp. 3_1_40A] Length = 181 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 70/209 (33%), Positives = 104/209 (49%), Gaps = 28/209 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + EIF ++QGEG H G AVF RFSGCNL +C FCDT G Sbjct: 1 MKKVNEIFYSIQGEGYHTGTPAVFVRFSGCNL-----------KCPFCDTQH-----EDG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + +++ + G+ +LTGGEP L +D + L++ G + +ETNGT Sbjct: 45 ILMSDEEILSEV------GKYPAVMVILTGGEPSLWIDREFVDRLHRIGKYVCIETNGTR 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P IDW+ SPK G + + E+K+V+ ++S Y + LQP Sbjct: 99 SLPNNIDWVTCSPKEGSNAIVVNPHEIKVVYTGQDLS--TYEEMTAAVYYLQPCSC---- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +NT I Y ++PKW+LS+QT K + +R Sbjct: 153 QNTEEVIGYIKKHPKWKLSLQTQKILNVR 181 >gi|218259962|ref|ZP_03475458.1| hypothetical protein PRABACTJOHN_01119 [Parabacteroides johnsonii DSM 18315] gi|218224823|gb|EEC97473.1| hypothetical protein PRABACTJOHN_01119 [Parabacteroides johnsonii DSM 18315] Length = 180 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 77/208 (37%), Positives = 103/208 (49%), Gaps = 29/208 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------KCSFCDTRH-----EEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + I +LTGGEP L +D I L+ G I +ETNGT Sbjct: 45 ILMSDEDILQAISA------FPSNVVILTGGEPSLWIDQTFIDLLHMAGKYICIETNGTN 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+GIDW+ SPK G L++ E+K+V+ +++ Y G + LQP Sbjct: 99 PLPEGIDWVTCSPK-GFPLRLAHIDEVKVVYTGQDLT--EYAGLEATWHFLQPCSCL--- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT + Y +P+WRLS+QTHK I I Sbjct: 153 -NTKEVVEYILHHPQWRLSLQTHKLIDI 179 >gi|15832887|ref|NP_311660.1| hypothetical protein ECs3633 [Escherichia coli O157:H7 str. Sakai] gi|16130684|ref|NP_417257.1| conserved protein [Escherichia coli str. K-12 substr. MG1655] gi|24114061|ref|NP_708571.1| hypothetical protein SF2790 [Shigella flexneri 2a str. 301] gi|30064123|ref|NP_838294.1| hypothetical protein S2984 [Shigella flexneri 2a str. 2457T] gi|82778146|ref|YP_404495.1| hypothetical protein SDY_2981 [Shigella dysenteriae Sd197] gi|89109563|ref|AP_003343.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110] gi|157155007|ref|YP_001464098.1| hypothetical protein EcE24377A_3080 [Escherichia coli E24377A] gi|157162228|ref|YP_001459546.1| hypothetical protein EcHS_A2918 [Escherichia coli HS] gi|168749899|ref|ZP_02774921.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] gi|168758464|ref|ZP_02783471.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|168762823|ref|ZP_02787830.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] gi|168768869|ref|ZP_02793876.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|168778760|ref|ZP_02803767.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] gi|168788031|ref|ZP_02813038.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] gi|168802847|ref|ZP_02827854.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] gi|170082350|ref|YP_001731670.1| hypothetical protein ECDH10B_2944 [Escherichia coli str. K-12 substr. DH10B] gi|170682101|ref|YP_001744934.1| hypothetical protein EcSMS35_2910 [Escherichia coli SMS-3-5] gi|170766131|ref|ZP_02900942.1| conserved hypothetical protein [Escherichia albertii TW07627] gi|188495163|ref|ZP_03002433.1| conserved hypothetical protein [Escherichia coli 53638] gi|194434862|ref|ZP_03067109.1| conserved hypothetical protein [Shigella dysenteriae 1012] gi|194438962|ref|ZP_03071046.1| conserved hypothetical protein [Escherichia coli 101-1] gi|195939488|ref|ZP_03084870.1| hypothetical protein EscherichcoliO157_24278 [Escherichia coli O157:H7 str. EC4024] gi|208805739|ref|ZP_03248076.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] gi|208813020|ref|ZP_03254349.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208819186|ref|ZP_03259506.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209398503|ref|YP_002272239.1| hypothetical protein ECH74115_4033 [Escherichia coli O157:H7 str. EC4115] gi|217327761|ref|ZP_03443844.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|218547712|ref|YP_002381503.1| hypothetical protein EFER_0293 [Escherichia fergusonii ATCC 35469] gi|218696375|ref|YP_002404042.1| hypothetical protein EC55989_3051 [Escherichia coli 55989] gi|218706272|ref|YP_002413791.1| hypothetical protein ECUMN_3104 [Escherichia coli UMN026] gi|238901913|ref|YP_002927709.1| hypothetical protein BWG_2512 [Escherichia coli BW2952] gi|253772373|ref|YP_003035204.1| hypothetical protein ECBD_0953 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037826|ref|ZP_04871884.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|254162703|ref|YP_003045811.1| hypothetical protein ECB_02622 [Escherichia coli B str. REL606] gi|254794716|ref|YP_003079553.1| hypothetical protein ECSP_3726 [Escherichia coli O157:H7 str. TW14359] gi|256024721|ref|ZP_05438586.1| hypothetical protein E4_15200 [Escherichia sp. 4_1_40B] gi|261226072|ref|ZP_05940353.1| hypothetical protein EscherichiacoliO157_15958 [Escherichia coli O157:H7 str. FRIK2000] gi|261256672|ref|ZP_05949205.1| hypothetical protein EscherichiacoliO157EcO_12655 [Escherichia coli O157:H7 str. FRIK966] gi|291284103|ref|YP_003500921.1| hypothetical protein G2583_3426 [Escherichia coli O55:H7 str. CB9615] gi|293406268|ref|ZP_06650194.1| aconitate hydratase [Escherichia coli FVEC1412] gi|293416022|ref|ZP_06658662.1| ygcF protein [Escherichia coli B185] gi|293449103|ref|ZP_06663524.1| ygcF protein [Escherichia coli B088] gi|298382006|ref|ZP_06991603.1| ygcF protein [Escherichia coli FVEC1302] gi|300899636|ref|ZP_07117868.1| radical SAM domain protein [Escherichia coli MS 198-1] gi|300931233|ref|ZP_07146574.1| radical SAM domain protein [Escherichia coli MS 187-1] gi|300950504|ref|ZP_07164414.1| radical SAM domain protein [Escherichia coli MS 116-1] gi|300958089|ref|ZP_07170250.1| radical SAM domain protein [Escherichia coli MS 175-1] gi|301020692|ref|ZP_07184762.1| radical SAM domain protein [Escherichia coli MS 196-1] gi|301645261|ref|ZP_07245212.1| radical SAM domain protein [Escherichia coli MS 146-1] gi|307139461|ref|ZP_07498817.1| hypothetical protein EcolH7_15212 [Escherichia coli H736] gi|307312795|ref|ZP_07592425.1| Radical SAM domain protein [Escherichia coli W] gi|309786123|ref|ZP_07680751.1| uncharacterized protein ygcF [Shigella dysenteriae 1617] gi|331643461|ref|ZP_08344592.1| putative Organic radical activating enzyme [Escherichia coli H736] gi|331654257|ref|ZP_08355257.1| putative Organic radical activating enzyme [Escherichia coli M718] gi|331684398|ref|ZP_08384990.1| putative Organic radical activating enzyme [Escherichia coli H299] gi|54040228|sp|P64555|YGCF_ECO57 RecName: Full=7-carboxy-7-deazaguanine synthase homolog gi|54040229|sp|P64556|YGCF_SHIFL RecName: Full=7-carboxy-7-deazaguanine synthase homolog gi|54042396|sp|P64554|YGCF_ECOLI RecName: Full=7-carboxy-7-deazaguanine synthase homolog gi|882671|gb|AAA69287.1| ORF_f223 [Escherichia coli str. K-12 substr. MG1655] gi|1789139|gb|AAC75819.1| conserved protein [Escherichia coli str. K-12 substr. MG1655] gi|13363104|dbj|BAB37056.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|24053188|gb|AAN44278.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30042379|gb|AAP18104.1| hypothetical protein S2984 [Shigella flexneri 2a str. 2457T] gi|81242294|gb|ABB63004.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|85675596|dbj|BAE76851.1| conserved hypothetical protein [Escherichia coli str. K12 substr. W3110] gi|157067908|gb|ABV07163.1| conserved hypothetical protein [Escherichia coli HS] gi|157077037|gb|ABV16745.1| conserved hypothetical protein [Escherichia coli E24377A] gi|169890185|gb|ACB03892.1| conserved protein [Escherichia coli str. K-12 substr. DH10B] gi|170125277|gb|EDS94208.1| conserved hypothetical protein [Escherichia albertii TW07627] gi|170519819|gb|ACB17997.1| conserved hypothetical protein [Escherichia coli SMS-3-5] gi|188015830|gb|EDU53952.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] gi|188490362|gb|EDU65465.1| conserved hypothetical protein [Escherichia coli 53638] gi|189003552|gb|EDU72538.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] gi|189354704|gb|EDU73123.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|189362097|gb|EDU80516.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|189366881|gb|EDU85297.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] gi|189372100|gb|EDU90516.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] gi|189375278|gb|EDU93694.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] gi|194416881|gb|EDX33003.1| conserved hypothetical protein [Shigella dysenteriae 1012] gi|194422083|gb|EDX38086.1| conserved hypothetical protein [Escherichia coli 101-1] gi|208725540|gb|EDZ75141.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] gi|208734297|gb|EDZ82984.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208739309|gb|EDZ86991.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209159903|gb|ACI37336.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4115] gi|209761508|gb|ACI79066.1| hypothetical protein ECs3633 [Escherichia coli] gi|209761510|gb|ACI79067.1| hypothetical protein ECs3633 [Escherichia coli] gi|209761512|gb|ACI79068.1| hypothetical protein ECs3633 [Escherichia coli] gi|209761514|gb|ACI79069.1| hypothetical protein ECs3633 [Escherichia coli] gi|209761516|gb|ACI79070.1| hypothetical protein ECs3633 [Escherichia coli] gi|217320128|gb|EEC28553.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|218353107|emb|CAU98932.1| conserved hypothetical protein [Escherichia coli 55989] gi|218355253|emb|CAQ87860.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469] gi|218433369|emb|CAR14271.1| conserved hypothetical protein [Escherichia coli UMN026] gi|226839450|gb|EEH71471.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|238860367|gb|ACR62365.1| conserved protein [Escherichia coli BW2952] gi|242378324|emb|CAQ33101.1| conserved protein [Escherichia coli BL21(DE3)] gi|253323417|gb|ACT28019.1| conserved hypothetical protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974604|gb|ACT40275.1| hypothetical protein ECB_02622 [Escherichia coli B str. REL606] gi|253978769|gb|ACT44439.1| hypothetical protein ECD_02622 [Escherichia coli BL21(DE3)] gi|254594116|gb|ACT73477.1| conserved protein [Escherichia coli O157:H7 str. TW14359] gi|260448173|gb|ACX38595.1| conserved hypothetical protein [Escherichia coli DH1] gi|281602138|gb|ADA75122.1| hypothetical protein SFxv_3060 [Shigella flexneri 2002017] gi|290763976|gb|ADD57937.1| hypothetical protein G2583_3426 [Escherichia coli O55:H7 str. CB9615] gi|291322193|gb|EFE61622.1| ygcF protein [Escherichia coli B088] gi|291426274|gb|EFE99306.1| aconitate hydratase [Escherichia coli FVEC1412] gi|291432211|gb|EFF05193.1| ygcF protein [Escherichia coli B185] gi|298277146|gb|EFI18662.1| ygcF protein [Escherichia coli FVEC1302] gi|299881782|gb|EFI89993.1| radical SAM domain protein [Escherichia coli MS 196-1] gi|300315222|gb|EFJ65006.1| radical SAM domain protein [Escherichia coli MS 175-1] gi|300356797|gb|EFJ72667.1| radical SAM domain protein [Escherichia coli MS 198-1] gi|300450164|gb|EFK13784.1| radical SAM domain protein [Escherichia coli MS 116-1] gi|300460946|gb|EFK24439.1| radical SAM domain protein [Escherichia coli MS 187-1] gi|301076426|gb|EFK91232.1| radical SAM domain protein [Escherichia coli MS 146-1] gi|306907230|gb|EFN37736.1| Radical SAM domain protein [Escherichia coli W] gi|308925868|gb|EFP71347.1| uncharacterized protein ygcF [Shigella dysenteriae 1617] gi|309703136|emb|CBJ02470.1| conserved hypothetical protein [Escherichia coli ETEC H10407] gi|313647836|gb|EFS12282.1| uncharacterized protein ygcF [Shigella flexneri 2a str. 2457T] gi|315062058|gb|ADT76385.1| conserved protein [Escherichia coli W] gi|315137383|dbj|BAJ44542.1| hypothetical protein ECDH1ME8569_2686 [Escherichia coli DH1] gi|315615162|gb|EFU95799.1| uncharacterized protein ygcF [Escherichia coli 3431] gi|320182388|gb|EFW57285.1| Queuosine Biosynthesis QueE Radical SAM [Shigella boydii ATCC 9905] gi|320189106|gb|EFW63765.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli O157:H7 str. EC1212] gi|320640422|gb|EFX09961.1| hypothetical protein ECO5101_03379 [Escherichia coli O157:H7 str. G5101] gi|320645668|gb|EFX14653.1| hypothetical protein ECO9389_22861 [Escherichia coli O157:H- str. 493-89] gi|320650968|gb|EFX19408.1| hypothetical protein ECO2687_10848 [Escherichia coli O157:H- str. H 2687] gi|320656464|gb|EFX24360.1| hypothetical protein ECO7815_01005 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662360|gb|EFX29757.1| hypothetical protein ECO5905_04892 [Escherichia coli O55:H7 str. USDA 5905] gi|320667058|gb|EFX34021.1| hypothetical protein ECOSU61_08009 [Escherichia coli O157:H7 str. LSU-61] gi|323183315|gb|EFZ68712.1| hypothetical protein ECOK1357_3090 [Escherichia coli 1357] gi|323377359|gb|ADX49627.1| Radical SAM domain protein [Escherichia coli KO11] gi|323933926|gb|EGB30415.1| queuosine biosynthesis protein QueE [Escherichia coli E1520] gi|323946500|gb|EGB42526.1| queuosine biosynthesis protein QueE [Escherichia coli H120] gi|323960705|gb|EGB56329.1| queuosine biosynthesis protein QueE [Escherichia coli H489] gi|323966752|gb|EGB62183.1| queuosine biosynthesis protein QueE [Escherichia coli M863] gi|323971622|gb|EGB66853.1| queuosine biosynthesis protein QueE [Escherichia coli TA007] gi|323978613|gb|EGB73695.1| queuosine biosynthesis protein QueE [Escherichia coli TW10509] gi|324111402|gb|EGC05384.1| hypothetical protein ERIG_04120 [Escherichia fergusonii B253] gi|324119819|gb|EGC13698.1| queuosine biosynthesis protein QueE [Escherichia coli E1167] gi|325496184|gb|EGC94043.1| hypothetical protein ECD227_0281 [Escherichia fergusonii ECD227] gi|326339155|gb|EGD62970.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli O157:H7 str. 1044] gi|326342962|gb|EGD66730.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli O157:H7 str. 1125] gi|327251511|gb|EGE63197.1| hypothetical protein ECSTEC7V_3359 [Escherichia coli STEC_7v] gi|331036932|gb|EGI09156.1| putative Organic radical activating enzyme [Escherichia coli H736] gi|331047639|gb|EGI19716.1| putative Organic radical activating enzyme [Escherichia coli M718] gi|331078013|gb|EGI49219.1| putative Organic radical activating enzyme [Escherichia coli H299] gi|332087574|gb|EGI92702.1| hypothetical protein SB521682_3318 [Shigella boydii 5216-82] gi|332087749|gb|EGI92876.1| hypothetical protein SD15574_3520 [Shigella dysenteriae 155-74] Length = 223 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L K GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|327395003|dbj|BAK12425.1| organic radical Activating YgcF [Pantoea ananatis AJ13355] Length = 223 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 97/238 (40%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y I E+F TLQGEG + G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKQADRE 51 Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 ++ G + L I +Q T R+ V+TGGEP + PL + Sbjct: 52 TSLGDILVKTVESDAWGNADTATLLSSIAQQGWTA----RHVVITGGEPAIYDLRPLTAS 107 Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQVN 157 L GF+ +ET+GT E W+ VSPK + E+K V Q + Sbjct: 108 LEAAGFQCQIETSGTHEIHCSEQTWVTVSPKVNMRGGYDVLAQALSRADEIKHPVARQRD 167 Query: 158 VSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 V + + +LQP+ +E T L I C WRLS+QTHK++ I Sbjct: 168 VEALDDLLAGIQDSKARIIALQPISRK--DEATKLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|331674271|ref|ZP_08375031.1| putative Organic radical activating enzyme [Escherichia coli TA280] gi|331068365|gb|EGI39760.1| putative Organic radical activating enzyme [Escherichia coli TA280] Length = 223 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLMPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L K GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|239996401|ref|ZP_04716925.1| radical activating enzyme [Alteromonas macleodii ATCC 27126] Length = 224 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 65/239 (27%), Positives = 100/239 (41%), Gaps = 43/239 (17%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56 M +I E+F T+QGEG H G ++F R GC + C +CDT Sbjct: 1 MSTLNINEMFETIQGEGAHTGIPSIFVRLQGCPV-----------GCPWCDTKHTWEIKP 49 Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 +G + Y + L+ E G ++ V+TGGEP + PL Sbjct: 50 DLSVSPQAVITKGEESETYFISSEEALLAEFGKQG-YVAKHVVITGGEPCMYDLRPLTSL 108 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDL-------KIKGGQELKL------V 152 L+ G+ +ET+GT E ++ VSPK ++ E+K Sbjct: 109 LHDNGYTTQIETSGTFEVLCDTRTYVTVSPKINMKGGYDVLVSALERANEIKHPIAMQKH 168 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +++ N D ++ LQP+ + T LA+ C + WRLS+QTHK+IGI Sbjct: 169 IDELDALLANVSSLDGKQVCLQPISQ--QKRATELAVRTCIER-NWRLSLQTHKYIGIE 224 >gi|146312870|ref|YP_001177944.1| radical SAM domain-containing protein [Enterobacter sp. 638] gi|145319746|gb|ABP61893.1| Radical SAM domain protein [Enterobacter sp. 638] Length = 223 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 96/238 (40%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q T R+ V+TGGEP + + L Sbjct: 52 VSLFSILAKTKESDKWGAGSAEDLLAIIGRQGWTA----RHVVITGGEPCIHDLMSLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGID-WICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155 L K G+ +ET+GT E W+ VSPK ++ E+K + Sbjct: 108 LEKNGYSCQIETSGTHEVRCSHTAWVTVSPKVNMRGGYDVLSQALERADEIKHPVGRMRD 167 Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E E+ +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLTDEKQRIIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|310766631|gb|ADP11581.1| Uncharacterized protein ygcF [Erwinia sp. Ejp617] Length = 223 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 95/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y I E+F TLQGEG + G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLANRE 51 Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 ++ G + L + I T ++ V+TGGEP + PL A Sbjct: 52 TSLGDILLKTVETDAWGAADAPALLETIRRHGWTA----KHIVITGGEPCIYDLTPLTAA 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL-VFPQVN 157 L GF +ET+GT + W+ VSPK + + E+K V Q + Sbjct: 108 LQDSGFSCQIETSGTHQVRCTAQTWVTVSPKVNMRGGYDVLNQALARADEVKHPVARQRD 167 Query: 158 VSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 V + + +LQP+ + T L I C WRLS+QTHK++ I Sbjct: 168 VDALDELLATLNDNKARIIALQPISQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222 >gi|22124729|ref|NP_668152.1| hypothetical protein y0816 [Yersinia pestis KIM 10] gi|45440171|ref|NP_991710.1| hypothetical protein YP_0312 [Yersinia pestis biovar Microtus str. 91001] gi|51595107|ref|YP_069298.1| coenzyme PQQ synthesis protein [Yersinia pseudotuberculosis IP 32953] gi|108808863|ref|YP_652779.1| hypothetical protein YPA_2872 [Yersinia pestis Antiqua] gi|108810883|ref|YP_646650.1| hypothetical protein YPN_0718 [Yersinia pestis Nepal516] gi|145600242|ref|YP_001164318.1| hypothetical protein YPDSF_2985 [Yersinia pestis Pestoides F] gi|153949574|ref|YP_001402270.1| radical SAM domain-containing protein [Yersinia pseudotuberculosis IP 31758] gi|153997583|ref|ZP_02022683.1| hypothetical protein YPE_4042 [Yersinia pestis CA88-4125] gi|162421287|ref|YP_001605539.1| radical SAM domain-containing protein [Yersinia pestis Angola] gi|165925701|ref|ZP_02221533.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165936653|ref|ZP_02225220.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|166009994|ref|ZP_02230892.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166214107|ref|ZP_02240142.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167398407|ref|ZP_02303931.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420659|ref|ZP_02312412.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423406|ref|ZP_02315159.1| radical SAM domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470705|ref|ZP_02335409.1| radical SAM domain protein [Yersinia pestis FV-1] gi|170025659|ref|YP_001722164.1| radical SAM domain-containing protein [Yersinia pseudotuberculosis YPIII] gi|186894119|ref|YP_001871231.1| radical SAM domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|218930391|ref|YP_002348266.1| hypothetical protein YPO3374 [Yersinia pestis CO92] gi|229839004|ref|ZP_04459163.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896484|ref|ZP_04511652.1| conserved protein [Yersinia pestis Pestoides A] gi|229899572|ref|ZP_04514713.1| conserved protein [Yersinia pestis biovar Orientalis str. India 195] gi|229901094|ref|ZP_04516217.1| conserved protein [Yersinia pestis Nepal516] gi|270489273|ref|ZP_06206347.1| radical SAM domain protein [Yersinia pestis KIM D27] gi|294505081|ref|YP_003569143.1| hypothetical protein YPZ3_2972 [Yersinia pestis Z176003] gi|21957546|gb|AAM84403.1|AE013684_5 hypothetical protein y0816 [Yersinia pestis KIM 10] gi|45435027|gb|AAS60587.1| Organic radical activating enzymes [Yersinia pestis biovar Microtus str. 91001] gi|51588389|emb|CAH19997.1| putative coenzyme PQQ synthesis protein, nitrogenase iron-molybdenum domain [Yersinia pseudotuberculosis IP 32953] gi|108774531|gb|ABG17050.1| hypothetical protein YPN_0718 [Yersinia pestis Nepal516] gi|108780776|gb|ABG14834.1| hypothetical protein YPA_2872 [Yersinia pestis Antiqua] gi|115349002|emb|CAL21963.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145211938|gb|ABP41345.1| hypothetical protein YPDSF_2985 [Yersinia pestis Pestoides F] gi|149289220|gb|EDM39300.1| hypothetical protein YPE_4042 [Yersinia pestis CA88-4125] gi|152961069|gb|ABS48530.1| radical SAM domain protein [Yersinia pseudotuberculosis IP 31758] gi|162354102|gb|ABX88050.1| radical SAM domain protein [Yersinia pestis Angola] gi|165915302|gb|EDR33912.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|165922313|gb|EDR39490.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165990901|gb|EDR43202.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166204738|gb|EDR49218.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166961465|gb|EDR57486.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050911|gb|EDR62319.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057576|gb|EDR67322.1| radical SAM domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752193|gb|ACA69711.1| Radical SAM domain protein [Yersinia pseudotuberculosis YPIII] gi|186697145|gb|ACC87774.1| Radical SAM domain protein [Yersinia pseudotuberculosis PB1/+] gi|229681819|gb|EEO77912.1| conserved protein [Yersinia pestis Nepal516] gi|229687064|gb|EEO79139.1| conserved protein [Yersinia pestis biovar Orientalis str. India 195] gi|229695370|gb|EEO85417.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700558|gb|EEO88589.1| conserved protein [Yersinia pestis Pestoides A] gi|262363141|gb|ACY59862.1| hypothetical protein YPD4_2958 [Yersinia pestis D106004] gi|262367071|gb|ACY63628.1| hypothetical protein YPD8_2956 [Yersinia pestis D182038] gi|270337777|gb|EFA48554.1| radical SAM domain protein [Yersinia pestis KIM D27] gi|294355540|gb|ADE65881.1| hypothetical protein YPZ3_2972 [Yersinia pestis Z176003] gi|320016570|gb|ADW00142.1| conserved protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 223 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 96/240 (40%), Gaps = 49/240 (20%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57 LY I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 1 MLYPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKEAD 49 Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104 + G + QL DL +Q R+ V+TGGEP + PL Sbjct: 50 REVDMQRIMVKTAESDAWGSASEQQLLDLFAQQG----YTARHVVITGGEPSIYDLQPLT 105 Query: 105 QALNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ- 155 L + GF +ET+GT E W+ VSPK ++ E+K + Sbjct: 106 SLLEQAGFSCQIETSGTHEVRCSAQTWVTVSPKVNMRGGLKILSQALQRADEIKHPVGRL 165 Query: 156 --VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + D ++ +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 166 RDIEALEALLATLDDDKKRIIALQPISQK--EDATKLCIETCIAK-NWRLSMQTHKYLNI 222 >gi|15803295|ref|NP_289328.1| hypothetical protein Z4089 [Escherichia coli O157:H7 EDL933] gi|25497213|pir||C85928 hypothetical protein ygcF [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12517243|gb|AAG57887.1|AE005505_5 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] Length = 223 Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLFSILAKTKESDKWGAASSEBLLAVIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L K GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|253988156|ref|YP_003039512.1| hypothetical protein PAU_00675 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779606|emb|CAQ82767.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 223 Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 96/238 (40%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I EIF TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEIFQTLQGEGFFTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKKAEKQ 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + + G + Q+A L +Q R+ V+TGGEP + +PL + Sbjct: 52 QMLETILLKTNESDEWGEASPKQIATLFVQQG----YTARHVVITGGEPCIYDLIPLTEE 107 Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155 L G++ +ET+GT W+ VSPK ++ E+K + Sbjct: 108 LENLGYQCQIETSGTYHVECSAATWVTVSPKVKMRGGYQVLQQALQRANEIKHPVARERD 167 Query: 156 VNVSPENYIGFD---FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E D +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLDNNSSRIIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|300727783|ref|ZP_07061165.1| organic radical activating enzyme [Prevotella bryantii B14] gi|299774936|gb|EFI71546.1| organic radical activating enzyme [Prevotella bryantii B14] Length = 196 Score = 233 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 81/216 (37%), Positives = 114/216 (52%), Gaps = 27/216 (12%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H GR A+F RFSGCNL +C FCDTDF Q Sbjct: 1 MKKINEIFYSLQGEGRHTGRAAIFIRFSGCNL-----------KCSFCDTDFKDYQ---- 45 Query: 63 GRYNVDQLADLIEEQ----WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 + + + +EE + +LTGGEP +QVD I + G+ +A+E+ Sbjct: 46 -EMSDEDILYKVEELRKDKIKDAGQPKPMIILTGGEPTMQVDGAFIDMFHAAGYFVAMES 104 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178 NGT EPP+ +DW+ VSPK +K+ ELK +F + + G + LQP D Sbjct: 105 NGTKEPPKQLDWLTVSPKEH--VKVAQCDELKCIFDGEHQV--DTFGIKAYYYYLQPCDT 160 Query: 179 PFLEENTNL---AISYCFQNPKWRLSVQTHKFIGIR 211 ++N + ++Y Q+PKWRLS+QTHK IG + Sbjct: 161 GDAQKNQEILSACVAYIEQHPKWRLSLQTHKLIGFK 196 >gi|271501834|ref|YP_003334860.1| Radical SAM domain-containing protein [Dickeya dadantii Ech586] gi|270345389|gb|ACZ78154.1| Radical SAM domain protein [Dickeya dadantii Ech586] Length = 223 Score = 233 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 100/241 (41%), Gaps = 50/241 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI--- 57 M+ Y I E+F TLQGEG G AVF R GC + C +CDT Sbjct: 1 MR-YPINEMFQTLQGEGFFTGVPAVFIRLQGCPV-----------GCSWCDTKHTWDTLP 48 Query: 58 --------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103 + +V+ L I +Q R+ V+TGGEP + PL Sbjct: 49 ERQISLAEVLVKRGESDAWSSSSVEALLQQITQQG----YSARHVVITGGEPCIHDLTPL 104 Query: 104 IQALNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ 155 QAL ++GF +ET+GT E W+ VSPK D ++ E+K + Sbjct: 105 TQALEQQGFSTQIETSGTHEVRCSSGCWVTVSPKVNMRGGLAVLDQALQRADEIKHPVAR 164 Query: 156 ---VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209 + D ++ +LQP+ E+ T L I C WRLS+QTHK++ Sbjct: 165 ERDIEALEGLLARLDDDKVRVVALQPVSQK--EDATRLCIETCIAR-NWRLSMQTHKYLN 221 Query: 210 I 210 I Sbjct: 222 I 222 >gi|27366011|ref|NP_761539.1| Queuosine Biosynthesis QueE Radical SAM [Vibrio vulnificus CMCP6] gi|37679724|ref|NP_934333.1| organic radical activating enzyme [Vibrio vulnificus YJ016] gi|320156525|ref|YP_004188904.1| queuosine Biosynthesis QueE Radical SAM [Vibrio vulnificus MO6-24/O] gi|27362211|gb|AAO11066.1| Queuosine Biosynthesis QueE Radical SAM [Vibrio vulnificus CMCP6] gi|37198469|dbj|BAC94304.1| organic radical activating enzyme [Vibrio vulnificus YJ016] gi|319931837|gb|ADV86701.1| queuosine Biosynthesis QueE Radical SAM [Vibrio vulnificus MO6-24/O] Length = 224 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 97/237 (40%), Gaps = 41/237 (17%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M LY + E+F T+QGEG G AVF R C + C +CDT Sbjct: 1 MTLYKVNEMFETIQGEGVFTGVPAVFVRLQICPV-----------GCSWCDTKQTWEAAE 49 Query: 61 KGGRYNVDQL-------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107 + + + + A I EQ+ ++ V+TGGEP L L QA Sbjct: 50 QDEQSFAEIIVKTGDSPTWCQADAAAIVEQYQRQGYSAKHIVITGGEPCLYDLTELTQAF 109 Query: 108 NKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNV 158 G + +ET+GT E W+ VSPK K+ E+K V Q ++ Sbjct: 110 EAIGCQCQIETSGTYEVKASENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVGTQKDI 169 Query: 159 SPENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + +LQP+ E T L I C + WRLS+QTHK++ I Sbjct: 170 DQLDALLLRAQVPATTVIALQPISQK--ERATQLCIDTCIKR-NWRLSIQTHKYLSI 223 >gi|259909462|ref|YP_002649818.1| hypothetical protein EpC_28370 [Erwinia pyrifoliae Ep1/96] gi|224965084|emb|CAX56616.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96] Length = 223 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 95/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y I E+F TLQGEG + G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLADRE 51 Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 ++ G + L + I T ++ V+TGGEP + PL A Sbjct: 52 TSLGDILLKTVETDAWGAADAPALLETIRRHGWTA----KHIVITGGEPCIYDLTPLTAA 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL-VFPQVN 157 L GF +ET+GT + W+ VSPK + + E+K V Q + Sbjct: 108 LQDSGFSCQIETSGTHQVRCTAQTWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQRD 167 Query: 158 VSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 V + + +LQP+ + T L I C WRLS+QTHK++ I Sbjct: 168 VDALDELLATLNDNKARIIALQPISQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222 >gi|282879508|ref|ZP_06288242.1| radical SAM domain protein [Prevotella timonensis CRIS 5C-B1] gi|281306655|gb|EFA98681.1| radical SAM domain protein [Prevotella timonensis CRIS 5C-B1] Length = 199 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 77/217 (35%), Positives = 116/217 (53%), Gaps = 30/217 (13%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + Y + EIF +LQGEG HAG+ AVF RF+ CNL C FCDT+F + Sbjct: 6 RTYKVNEIFYSLQGEGHHAGKAAVFVRFAKCNL-----------HCSFCDTNF-----DE 49 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + Q+ + +++ + V+TGGEP LQV L+Q + G+ +++ETNGT Sbjct: 50 YTEMSAQQIIENVQQYA-----PCNFVVITGGEPTLQVTATLLQLFHVHGYYVSMETNGT 104 Query: 122 IEPPQGIDWICVSPKAGC----DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177 P+G+DWI SPK D++IK E+K+V+ + P + G + E +QP D Sbjct: 105 HPIPKGVDWITCSPKKAFIEAGDVQIKQANEIKVVYD--GIHPISTFGIEAEERYVQPCD 162 Query: 178 GPFLEENTNL---AISYCFQNPKWRLSVQTHKFIGIR 211 N + AI + +P+W+LS+Q HK IGI+ Sbjct: 163 VGDESRNKEILQKAIQFVKTHPQWKLSLQLHKLIGIQ 199 >gi|292900399|ref|YP_003539768.1| hypothetical protein EAM_2701 [Erwinia amylovora ATCC 49946] gi|291200247|emb|CBJ47375.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946] Length = 223 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 95/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y I E+F TLQGEG + G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGVYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLANRE 51 Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 ++ G + L + I T ++ V+TGGEP + PL A Sbjct: 52 TSLGDILLKTVESDAWGAADAPALLETIRRHGWTA----KHIVITGGEPCIHDLTPLTAA 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL-VFPQVN 157 L GF +ET+GT E W+ VSPK + + E+K V Q + Sbjct: 108 LQGSGFSCQIETSGTHEVHCTAETWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQRD 167 Query: 158 VSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 V + + +LQP+ + T L I C WRLS+QTHK++ I Sbjct: 168 VDALDDLLATLSDNKARIIALQPVSQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222 >gi|37524702|ref|NP_928046.1| hypothetical protein plu0701 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784127|emb|CAE12996.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 223 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 97/235 (41%), Gaps = 43/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF TLQGEG G A+F R GC + C +CDT + + Sbjct: 3 YPINEIFQTLQGEGFFTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKEVEKQ 51 Query: 64 RYNVDQLA--------------DLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 R ++ + I ++ + R+ V+TGGEP L +PL + L Sbjct: 52 R-TLETILLKTSESNEWSKASPKQITALFVQQKYTARHVVITGGEPCLYDLIPLTEELES 110 Query: 110 RGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQVNVSP 160 G++ +ET+GT W+ VSPK ++ E+K V + ++ Sbjct: 111 LGYQCQIETSGTYHVKCSAATWVTVSPKVNMRGGYRILQQALQRANEIKYPVARERDIEA 170 Query: 161 ENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + +LQP+ EE T L I C WR S+QTHK++ I Sbjct: 171 LDELLATLNDNSSRIIALQPISQK--EEATRLCIETCIAR-NWRFSMQTHKYLNI 222 >gi|283479535|emb|CAY75451.1| Uncharacterized protein ygcF [Erwinia pyrifoliae DSM 12163] Length = 277 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 95/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y I E+F TLQGEG + G A+F R GC + C +CDT Sbjct: 57 YPINEMFQTLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLADRE 105 Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 ++ G + L + I T ++ V+TGGEP + PL A Sbjct: 106 TSLGDILLKTVETDAWGAADAPALLETIRRHGWTA----KHIVITGGEPCIYDLTPLTAA 161 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL-VFPQVN 157 L GF +ET+GT + W+ VSPK + + E+K V Q + Sbjct: 162 LQDSGFSCQIETSGTHQVRCTAQTWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQRD 221 Query: 158 VSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 V + + +LQP+ + T L I C WRLS+QTHK++ I Sbjct: 222 VDALDELLATLNDNKARIIALQPISQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 276 >gi|291086244|ref|ZP_06355196.2| radical SAM domain protein [Citrobacter youngae ATCC 29220] gi|291068637|gb|EFE06746.1| radical SAM domain protein [Citrobacter youngae ATCC 29220] Length = 242 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 97/238 (40%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 22 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLEDRE 70 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I+ Q R+ V+TGGEP + +PL Sbjct: 71 VSLYSILAKTKESDKWGAASSEDLLAVIQRQG----YTARHVVITGGEPCIHDLMPLTDL 126 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155 L K GF +ET+GT E W+ VSPK ++ E+K + Sbjct: 127 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRD 186 Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E ++ +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 187 IEALDELLATLSDDKPRIIALQPISQK--EDATRLCIDTCIA-CNWRLSMQTHKYLNI 241 >gi|238797157|ref|ZP_04640659.1| hypothetical protein ymoll0001_8670 [Yersinia mollaretii ATCC 43969] gi|238719004|gb|EEQ10818.1| hypothetical protein ymoll0001_8670 [Yersinia mollaretii ATCC 43969] Length = 229 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 92/241 (38%), Gaps = 49/241 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI--- 57 + LY I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 6 LMLYPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKEA 54 Query: 58 --------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103 + G QL D+ +Q R+ V+TGGEP + PL Sbjct: 55 DREVDMQRIMVKTAESDAWGSATEQQLLDIFSQQG----YTARHVVITGGEPSIYDLRPL 110 Query: 104 IQALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKL---- 151 L + G+ +ET+GT E W+ VSPK ++ E+K Sbjct: 111 TSLLEQGGYSCQIETSGTHEVQCSATTWVTVSPKVNMRGGLKVLPQALQRADEIKHPVGR 170 Query: 152 --VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209 + +LQP+ E+ T L I C WRLS+QTHK++ Sbjct: 171 LRDIEALEALLATLHDDKKRIIALQPISQK--EDATKLCIETCIAK-NWRLSMQTHKYLN 227 Query: 210 I 210 I Sbjct: 228 I 228 >gi|317049298|ref|YP_004116946.1| Radical SAM domain-containing protein [Pantoea sp. At-9b] gi|316950915|gb|ADU70390.1| Radical SAM domain protein [Pantoea sp. At-9b] Length = 223 Score = 232 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 96/238 (40%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y I E+F TLQGEG + G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGFYTGVPALFIRLQGCPV-----------GCSWCDTKHTWEKLADRE 51 Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 ++ G + L D I+ Q T R+ V+TGGEP + PL A Sbjct: 52 TSLGDILVKTVESDAWGNADAAMLIDTIQRQGWTA----RHVVITGGEPAIYDLRPLTSA 107 Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155 L GF +ET+GT E W+ VSPK ++ E+K + Sbjct: 108 LEAAGFACQIETSGTHEIRCSDSTWVTVSPKVNMRGGYDVLPQALQRADEIKHPVARVRD 167 Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 V G E+ +LQP+ + T L I C WRLS+QTHK++ I Sbjct: 168 VEALDALLAGLHDEKKRIIALQPISR--GDAATKLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|312171327|emb|CBX79586.1| Uncharacterized protein ygcF [Erwinia amylovora ATCC BAA-2158] Length = 223 Score = 232 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 95/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y I E+F TLQGEG + G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGVYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLANRE 51 Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 ++ G + L + I T ++ V+TGGEP + PL A Sbjct: 52 TSLGDILLKTVESDAWGAADAPALLETIRRHGWTA----KHIVITGGEPCIYDLTPLTAA 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL-VFPQVN 157 L GF +ET+GT E W+ VSPK + + E+K V Q + Sbjct: 108 LQGSGFSCQIETSGTHEVHCTAETWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQRD 167 Query: 158 VSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 V + + +LQP+ + T L I C WRLS+QTHK++ I Sbjct: 168 VDALDDLLATLSDNKARIIALQPVSQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222 >gi|331648502|ref|ZP_08349590.1| putative Organic radical activating enzyme [Escherichia coli M605] gi|331042249|gb|EGI14391.1| putative Organic radical activating enzyme [Escherichia coli M605] Length = 223 Score = 232 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 93/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLFSILAKTKESDKWGAASSEDLLVVIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L K GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222 >gi|292487226|ref|YP_003530098.1| hypothetical protein EAMY_0740 [Erwinia amylovora CFBP1430] gi|291552645|emb|CBA19690.1| Uncharacterized protein ygcF [Erwinia amylovora CFBP1430] Length = 255 Score = 232 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 95/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y I E+F TLQGEG + G A+F R GC + C +CDT Sbjct: 35 YPINEMFQTLQGEGVYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLANRE 83 Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 ++ G + L + I T ++ V+TGGEP + PL A Sbjct: 84 TSLGDILLKTVESDAWGAADAPALLETIRRHGWTA----KHIVITGGEPCIHDLTPLTAA 139 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL-VFPQVN 157 L GF +ET+GT E W+ VSPK + + E+K V Q + Sbjct: 140 LQGSGFSCQIETSGTHEVHCTAETWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQRD 199 Query: 158 VSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 V + + +LQP+ + T L I C WRLS+QTHK++ I Sbjct: 200 VDALDDLLATLSDNKARIIALQPVSQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 254 >gi|161501996|ref|YP_001569108.1| hypothetical protein SARI_00012 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863343|gb|ABX19966.1| hypothetical protein SARI_00012 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 223 Score = 232 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 94/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q + R+ V+TGGEP + +PL Sbjct: 52 VSLYSILAKTKESDKWGAASSEDLLTVINRQ----DYTARHVVITGGEPCIHDLMPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152 L K GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEKSGFSSQIETSGTHEVLCTPNTWVTVSPKVNMRGGYDVLTQALERANEIKHPVGRIRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 168 IEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|293392806|ref|ZP_06637124.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Serratia odorifera DSM 4582] gi|291424665|gb|EFE97876.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Serratia odorifera DSM 4582] Length = 223 Score = 232 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 64/238 (26%), Positives = 94/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKEANRE 51 Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + G +QL ++++ Q R+ V+TGGEP + +PL + Sbjct: 52 VDMQRILVKTEESDAWGSATAEQLLEVVQRQG----YTARHIVITGGEPCIYDLIPLTKL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL------V 152 G+ +ET+GT E W+ VSPK +K E+K Sbjct: 108 FELNGYACQIETSGTHEILCTPSTWVTVSPKVNMRGGMKVLEQALMRADEIKHPVGRQRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ + +LQP+ +E T L I C WRLS+QTHK++ I Sbjct: 168 IEALDALLDTLNDEKRRIIALQPISQK--DEATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|238761644|ref|ZP_04622619.1| hypothetical protein ykris0001_11220 [Yersinia kristensenii ATCC 33638] gi|238700158|gb|EEP92900.1| hypothetical protein ykris0001_11220 [Yersinia kristensenii ATCC 33638] Length = 223 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 97/238 (40%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKEADRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + G + QL D+ +Q R+ V+TGGEP + +PL Sbjct: 52 VDMQRIMVKTAESDLWGTASEQQLLDIFRQQG----YTARHVVITGGEPAIYDLLPLTSQ 107 Query: 107 LNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQVNV 158 L + G+ +ET+GT E W+ VSPK ++ E+K ++ Sbjct: 108 LEQAGYSCQIETSGTHEVQCSATTWVTVSPKVNMRGGLKVLPQALQRADEIKHPVGRLRD 167 Query: 159 SPENYIGF-----DFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + D +R +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 168 IEALEVLLVTLTDDKKRIIALQPISQK--EDATKLCIETCIAK-NWRLSMQTHKYLNI 222 >gi|332160379|ref|YP_004296956.1| hypothetical protein YE105_C0757 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604386|emb|CBY25884.1| queuosine Biosynthesis QueE Radical SAM [Yersinia enterocolitica subsp. palearctica Y11] gi|325664609|gb|ADZ41253.1| hypothetical protein YE105_C0757 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859861|emb|CBX70192.1| uncharacterized protein ygcF [Yersinia enterocolitica W22703] Length = 223 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 94/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKAADRE 51 Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 ++ G + QL D+ +Q R+ V+TGGEP + +PL Sbjct: 52 VDMQRIMVKTVENDAWGTASEQQLLDIFLQQG----YTARHVVITGGEPAIYDLLPLTSQ 107 Query: 107 LNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQV-- 156 L + G+ +ET+GT E W+ VSPK ++ E+K ++ Sbjct: 108 LEQAGYSCQIETSGTHEVQCSAATWVTVSPKVNMRGGLKILPQALQRADEIKHPVGRLRD 167 Query: 157 ----NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ EE T L I C WRLS+QTHK++ I Sbjct: 168 IEALEALLATLADDKKRIIALQPISQK--EEATKLCIETCIAK-NWRLSMQTHKYLNI 222 >gi|300718116|ref|YP_003742919.1| Putative organic radical activating enzyme [Erwinia billingiae Eb661] gi|299063952|emb|CAX61072.1| Putative organic radical activating enzyme [Erwinia billingiae Eb661] Length = 223 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 97/238 (40%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y I E+F TLQGEG + G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLADRE 51 Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 ++ G N L +I T R+ V+TGGEP + PL Sbjct: 52 TSLGDILTKTVETDAWGSANAAALLAVIANHGWTA----RHIVITGGEPCIHDLTPLTAT 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL-VFPQVN 157 L + GF +ET+GT E W+ VSPK + + E+K V Q + Sbjct: 108 LQQHGFSCQIETSGTHEVLCSAETWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQRD 167 Query: 158 VSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 V + +LQP+ ++ T L I C ++ WRLS+QTHK++ I Sbjct: 168 VEALQALLATLNDDKPRIIALQPISQK--DDATKLCIETCIKH-NWRLSMQTHKYLNI 222 >gi|123441108|ref|YP_001005097.1| hypothetical protein YE0753 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088069|emb|CAL10857.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 223 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 64/238 (26%), Positives = 92/238 (38%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKEADRE 51 Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 ++ + QL ++ +Q R+ V+TGGEP + PL Sbjct: 52 VDMQRIMVKTVESDAWATASEQQLLNIFSQQG----YTARHVVITGGEPAIYDLFPLTTQ 107 Query: 107 LNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKL------V 152 L + G+ +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEQAGYSCQIETSGTHEVQCSAATWVTVSPKVNMRGGLKVLPQALQRADEIKHPVGRLRD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E +LQP+ +E T L I C WRLS+QTHK++ I Sbjct: 168 IEALEQLLETLTDDKKRIIALQPISQK--DEATKLCIETCIAK-NWRLSMQTHKYLNI 222 >gi|269138400|ref|YP_003295100.1| radical SAM domain protein [Edwardsiella tarda EIB202] gi|267984060|gb|ACY83889.1| radical SAM domain protein [Edwardsiella tarda EIB202] gi|304558427|gb|ADM41091.1| Queuosine Biosynthesis QueE Radical SAM [Edwardsiella tarda FL6-60] Length = 223 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 66/235 (28%), Positives = 97/235 (41%), Gaps = 43/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R GC + C +CD+ Q + Sbjct: 3 YPINEIFQSLQGEGFYTGVPAVFIRLQGCPV-----------GCSWCDSQHTWHQRPEC- 50 Query: 64 RYNVDQLADLIEE--------------QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 + ++ Q+ + E + R+ V+TGGEP + +PL AL + Sbjct: 51 QADLAQIVEKTAESEAWASADAAALVALLRQRGYQARHVVITGGEPCMHDLLPLTTALEQ 110 Query: 110 RGFEIAVETNGTIEPPQGI-DWICVSPKAGCDL-------KIKGGQELKLVFPQV----- 156 G+ +ET+GT W+ VSPK G ++ E+K + Sbjct: 111 GGYRCQIETSGTHPVRCSAQTWVTVSPKVGMRGGMTVLTDALRRANEIKHPVARARDIEA 170 Query: 157 -NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + G +LQP+ EE T L I C WRLS+QTHK++ I Sbjct: 171 LDALLARLDGELPPVVALQPISCK--EEATRLCIETCLAR-NWRLSMQTHKYLNI 222 >gi|308187939|ref|YP_003932070.1| hypothetical protein Pvag_2457 [Pantoea vagans C9-1] gi|308058449|gb|ADO10621.1| Uncharacterized protein ygcF [Pantoea vagans C9-1] Length = 223 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 98/238 (41%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y I E+F TLQGEG + G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKRADRE 51 Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 ++ G + L IE+Q T R+ V+TGGEP + PL Sbjct: 52 TSLGDILIKTVESDAWGDADASTLLRSIEQQGWTA----RHVVITGGEPAIYDLRPLTTI 107 Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155 L + GF+ +ET+GT E W+ VSPK + E+K + Sbjct: 108 LEQHGFQCQIETSGTHEIHCSEQTWVTVSPKVNMRGGYDVLPQALSRADEIKHPVARQRD 167 Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 V+ G D + +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 168 VDALDGLLAGIDDTKARIIALQPISRK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|238750569|ref|ZP_04612069.1| hypothetical protein yrohd0001_3960 [Yersinia rohdei ATCC 43380] gi|238711217|gb|EEQ03435.1| hypothetical protein yrohd0001_3960 [Yersinia rohdei ATCC 43380] Length = 225 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 94/242 (38%), Gaps = 50/242 (20%) Query: 1 MKL-YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-- 57 M + Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 1 MLMQYPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKA 49 Query: 58 ---------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 + G + Q+ D+ +Q R+ V+TGGEP + P Sbjct: 50 ANREVDLQRILVKTAESDAWGNASEQQVLDIFIQQG----YTARHVVITGGEPAIYDLRP 105 Query: 103 LIQALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKL--- 151 L L + G+ +ET+GT W+ VSPK ++ E+K Sbjct: 106 LTSHLEQAGYSCQIETSGTHAVQCSPTTWVTVSPKVNMRGGMKVLPQALQRADEIKHPVG 165 Query: 152 ---VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + + + +LQP+ E+ T L I C WRLS+QTHK++ Sbjct: 166 RLRDIEALELLLQTLDDDKKRIIALQPISQK--EDATKLCIETCIAK-NWRLSMQTHKYL 222 Query: 209 GI 210 I Sbjct: 223 NI 224 >gi|282878839|ref|ZP_06287606.1| radical SAM domain protein [Prevotella buccalis ATCC 35310] gi|281299047|gb|EFA91449.1| radical SAM domain protein [Prevotella buccalis ATCC 35310] Length = 199 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 77/217 (35%), Positives = 114/217 (52%), Gaps = 30/217 (13%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + Y + EIF +LQGEG HAGR AVF RF+ CNL C FCDT+F Sbjct: 6 RTYKVNEIFYSLQGEGHHAGRAAVFVRFAKCNL-----------HCWFCDTNFDTF---- 50 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + Q+ + +++ + V+TGGEP LQV L+Q + G+ +++ETNGT Sbjct: 51 -TEMSAQQIIENVQQYA-----PCHFVVITGGEPTLQVTPELLQLFHIHGYYVSMETNGT 104 Query: 122 IEPPQGIDWICVSPKAGC----DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177 P+G+DW+ SPK D+ IK E+K+V+ + P + G + E +QP D Sbjct: 105 HPIPKGVDWVTCSPKKAFIEAGDVHIKQANEIKVVYD--GIHPISTFGIESEERYVQPCD 162 Query: 178 GPF---LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +E AI + +P+W+LS+Q HK IGI+ Sbjct: 163 VGDELRNKEIMQQAIQFVKTHPQWKLSLQLHKLIGIQ 199 >gi|167623866|ref|YP_001674160.1| radical SAM domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167353888|gb|ABZ76501.1| Radical SAM domain protein [Shewanella halifaxensis HAW-EB4] Length = 222 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 99/238 (41%), Gaps = 45/238 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56 MK Y + E+F T+QGEG G AVF R GC + C +CDT Sbjct: 1 MK-YPVNEVFETIQGEGTFTGVPAVFVRLQGCPV-----------GCSWCDTKQTWELLE 48 Query: 57 -----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 + GT G R++ +L+ G ++ V+TGGEP L L Q Sbjct: 49 ANHVAKELVIQVDGTIG-RWSELSAEELVNAFKDKGFN-AKHIVITGGEPCLYDLTELTQ 106 Query: 106 ALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDL-------KIKGGQELKLVFPQVN 157 L+ +G++ +ET+GT + D W+ VSPK + E+K N Sbjct: 107 YLHSQGYQTQIETSGTFDVLCHADTWVTVSPKVNMKGGYKVLAQALNRANEIKHPIATQN 166 Query: 158 VSPENY-----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E I + LQP+ T LA+S C WRLS+QTHK++ I Sbjct: 167 HIDELDELLEGIDLTDKTVCLQPISQK--ARATELAMSTCIAR-NWRLSIQTHKYLDI 221 >gi|291618623|ref|YP_003521365.1| YgcF [Pantoea ananatis LMG 20103] gi|291153653|gb|ADD78237.1| YgcF [Pantoea ananatis LMG 20103] Length = 223 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 97/238 (40%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y I E+F TLQGEG + G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKQADRE 51 Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 ++ G + L I +Q T R+ V+TGGEP + PL + Sbjct: 52 TSLGDILVKTVESDAWGNADTATLLSSIAQQGWTA----RHAVITGGEPAIYDLRPLTAS 107 Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQVN 157 L GF+ +ET+GT E W+ VSPK + E+K V Q + Sbjct: 108 LEAAGFQCQIETSGTHEIHCSEQTWVTVSPKVNMRGGYDVLAQALSRADEIKHPVARQRD 167 Query: 158 VSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 V + + +LQP+ +E T L I C WRLS+QTHK++ I Sbjct: 168 VEALDDLLAGIQDSKARIIALQPISRK--DEATKLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|24374045|ref|NP_718088.1| radical activating enzyme [Shewanella oneidensis MR-1] gi|24348519|gb|AAN55532.1|AE015692_2 radical activating enzyme [Shewanella oneidensis MR-1] Length = 222 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 93/235 (39%), Gaps = 44/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y + E+F T+QGEG G A+F R GC + C +CDT Sbjct: 3 YPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDLLETNK 51 Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 + GT G N A + E + R+ V+TGGEP + L L+ Sbjct: 52 VSPEQVITVDGTVGRWAN--HTAQSLIEAFHAKGYTARHVVITGGEPCMYDLHELTHMLH 109 Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDL-------KIKGGQELKLVFPQVNVSP 160 + GF +ET+GT E D W+ VSPK + E+K N Sbjct: 110 RAGFATQIETSGTFEVKCDKDTWVTVSPKVNMKGGYPVLAQALNRANEIKHPIATQNHID 169 Query: 161 E-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E + I + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 170 ELDELLSDIDVSAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221 >gi|114047413|ref|YP_737963.1| radical activating enzyme [Shewanella sp. MR-7] gi|113888855|gb|ABI42906.1| radical activating enzyme [Shewanella sp. MR-7] Length = 222 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 92/235 (39%), Gaps = 44/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y + E+F T+QGEG G A+F R GC + C +CDT Sbjct: 3 YPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDLLEENK 51 Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 + G+ G N A + E + R+ V+TGGEP + L AL+ Sbjct: 52 VSPEQVITVDGSVGRWAN--HTAQSLIEAFNAKGYTARHVVITGGEPCMYDLNELTHALH 109 Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDL-------KIKGGQELKLVFPQVNVSP 160 GF +ET+GT E D W+ VSPK + E+K N Sbjct: 110 AAGFATQIETSGTFEVKCDADTWVTVSPKINMKGGYQVLAQALIRANEIKHPIATENHID 169 Query: 161 ENY-----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E I + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 170 ELDELLKGIDVSAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221 >gi|238786798|ref|ZP_04630599.1| hypothetical protein yfred0001_17670 [Yersinia frederiksenii ATCC 33641] gi|238725166|gb|EEQ16805.1| hypothetical protein yfred0001_17670 [Yersinia frederiksenii ATCC 33641] Length = 223 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 94/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKDANRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + G QL D+ +Q R+ V+TGGEP + PL Sbjct: 52 VDMQRIMVKTAESDAWGTATEQQLLDIFIQQG----YTARHVVITGGEPAIYDLFPLTSH 107 Query: 107 LNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155 L + G+ +ET+GT E W+ VSPK ++ E+K + Sbjct: 108 LEQAGYSCQIETSGTHEVQCSATTWVTVSPKVNMRGGLKVLPQALQRADEIKHPVGRLRD 167 Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + D ++ +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 168 IEALEALLATLDDDKKRIIALQPISQK--EDATKLCIETCIVK-NWRLSMQTHKYLNI 222 >gi|85058492|ref|YP_454194.1| hypothetical protein SG0514 [Sodalis glossinidius str. 'morsitans'] gi|84779012|dbj|BAE73789.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 223 Score = 230 bits (588), Expect = 8e-59, Method: Composition-based stats. Identities = 65/238 (27%), Positives = 94/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y + EIF TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPLNEIFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCSWCDTKHTWQQDEAER 51 Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 ++ +++ L+ +Q T R+ V+TGGEP L +PL Sbjct: 52 VTAGEIPLKTADSSRWASITAEEIIALMVKQGWTA----RHVVITGGEPCLHDLMPLTHT 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL------V 152 L ++GF +ET+GT E W+ VSPK + E+K Sbjct: 108 LEQQGFSCQIETSGTQEIHCTPQTWVTVSPKINMRGGLPVLAQALGRSDEIKHPAARQSD 167 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +++ +LQP+ E T L I C WRLS+QTHK++ I Sbjct: 168 IDELDALLATLHDTKQRVIALQPISQK--EAATRLCIETCIAR-NWRLSMQTHKYLNI 222 >gi|113970395|ref|YP_734188.1| radical activating enzyme [Shewanella sp. MR-4] gi|113885079|gb|ABI39131.1| radical activating enzyme [Shewanella sp. MR-4] Length = 222 Score = 230 bits (588), Expect = 8e-59, Method: Composition-based stats. Identities = 66/235 (28%), Positives = 91/235 (38%), Gaps = 44/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y + E+F T+QGEG G A+F R GC + C +CDT Sbjct: 3 YPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWGLLEENK 51 Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 + G+ G N A + E + R+ V+TGGEP + L L+ Sbjct: 52 VSPQQVITVDGSVGRWAN--HTAQSLIEAFNAKGYTARHVVITGGEPCMYDLNELTHTLH 109 Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDL-------KIKGGQELKLVFPQVNVSP 160 GF +ET+GT E D W+ VSPK + E+K N Sbjct: 110 AAGFATQIETSGTFEVKCDADTWVTVSPKVNMKGGYQVLAQALTRANEIKHPIATENHID 169 Query: 161 ENY-----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E I + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 170 ELDELLKGIDVSVKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221 >gi|262171605|ref|ZP_06039283.1| queuosine Biosynthesis QueE Radical SAM [Vibrio mimicus MB-451] gi|261892681|gb|EEY38667.1| queuosine Biosynthesis QueE Radical SAM [Vibrio mimicus MB-451] Length = 222 Score = 230 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 95/236 (40%), Gaps = 43/236 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56 +Y I E+F T+QGEG G AVF R GC + C +CDT Sbjct: 1 MYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLESD 49 Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 ++ + + D+IE G + ++ V+TGGEP + L QA Sbjct: 50 QTSFPQILLKTSDAPTWCQASAQDVIERYRAQG-YQAKHIVITGGEPCIYDLTELTQAFE 108 Query: 109 KRGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159 G + +ET+GT E W+ VSPK K+ E+K V + ++ Sbjct: 109 AIGCQCQIETSGTYEILATPTTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 168 Query: 160 PENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 169 NLDELLVRASVDAKTVIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 221 >gi|282600228|ref|ZP_05973516.2| radical SAM domain protein [Providencia rustigianii DSM 4541] gi|282566364|gb|EFB71899.1| radical SAM domain protein [Providencia rustigianii DSM 4541] Length = 230 Score = 230 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 94/239 (39%), Gaps = 44/239 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-- 58 MK Y I EIF TLQGEG G AVF R GC + C +CDT + Sbjct: 8 MK-YPINEIFQTLQGEGVFTGVPAVFIRLQGCPV-----------GCSWCDTKQTWDKEP 55 Query: 59 -----------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107 T+ A+ + + ++ V+TGGEP + PL + L Sbjct: 56 AKESTLGDIALKTQDNDLWAMADAEALIQLMQQSGYTAKHIVITGGEPCIYDLNPLTETL 115 Query: 108 NKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCDLKIK-------GGQELKLVFPQVNVS 159 GF+ +ET+GT W+ VSPK G +K E+K + Sbjct: 116 ETNGFQCQIETSGTYPILCTEKTWVTVSPKVGMKGGLKVLNQAVDRANEIKHPVAREK-D 174 Query: 160 PENYIGFDFER-------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 E R +LQP+ T L I C Q WRLS+QTHK++ I+ Sbjct: 175 IEALDQLLARRTNNAPLIVALQPISQKVS--ATKLCIDTCIQR-NWRLSIQTHKYLNIQ 230 >gi|262165604|ref|ZP_06033341.1| queuosine Biosynthesis QueE Radical SAM [Vibrio mimicus VM223] gi|262025320|gb|EEY43988.1| queuosine Biosynthesis QueE Radical SAM [Vibrio mimicus VM223] Length = 222 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 95/236 (40%), Gaps = 43/236 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56 +Y I E+F T+QGEG G AVF R GC + C +CDT Sbjct: 1 MYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLESD 49 Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 ++ + + D+IE G + ++ V+TGGEP + L QA Sbjct: 50 QTSFPQILLKTSDAPTWCQASAQDVIERYRAQG-YQAKHIVITGGEPCIYDLTELTQAFA 108 Query: 109 KRGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159 G + +ET+GT E W+ VSPK K+ E+K V + ++ Sbjct: 109 AIGCQCQIETSGTYEILATPTTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 168 Query: 160 PENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 169 NLDELLVRASVDAKTVIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 221 >gi|218709344|ref|YP_002416965.1| organic radical activating enzyme [Vibrio splendidus LGP32] gi|218322363|emb|CAV18509.1| Organic radical activating enzyme [Vibrio splendidus LGP32] Length = 222 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 94/236 (39%), Gaps = 43/236 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56 +Y I E+F T+QGEG G AVF R C + C +CDT Sbjct: 1 MYKINEMFETIQGEGVFTGVPAVFVRLQICPV-----------GCSWCDTKQTWEALPED 49 Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 ++ + ++ E G ++ V+TGGEP + VPL +A Sbjct: 50 ETSLGDIMVKTEDSPTWTAIDAQGIVNEYIKQG-YTAKHIVITGGEPCIYDLVPLTEAFE 108 Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKL------VFP 154 + G +ET+GT E D W+ VSPK K+ E+K Sbjct: 109 QHGCRCQIETSGTSEVKATPDTWVTVSPKVSMKAKLDILDSALVRANEIKHPVGTGKDIE 168 Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 Q++ + +LQP+ E T L I C + WRLS+QTHK++ I Sbjct: 169 QLDALIARADVPENTVIALQPISQK--ERATQLCIDTCIER-NWRLSIQTHKYLSI 221 >gi|154490137|ref|ZP_02030398.1| hypothetical protein PARMER_00367 [Parabacteroides merdae ATCC 43184] gi|154089029|gb|EDN88073.1| hypothetical protein PARMER_00367 [Parabacteroides merdae ATCC 43184] Length = 180 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 76/208 (36%), Positives = 101/208 (48%), Gaps = 29/208 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------KCSFCDTRH-----EEG 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + I +LTGGEP L +D I L+ G I +ETNGT Sbjct: 45 ILMSDEDILQAISA------FPSNVVILTGGEPSLWIDQTFIDLLHMAGKYICIETNGTN 98 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P+GIDW+ SPK G L++ E+K+V+ +++ Y G LQP Sbjct: 99 PLPEGIDWVTCSPK-GFPLRLTHIDEIKVVYTGQDLT--EYAGLKATWHFLQPCSCL--- 152 Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 NT + Y +P+W LS+QTHK I I Sbjct: 153 -NTKEVVEYILHHPQWHLSLQTHKLIDI 179 >gi|294141101|ref|YP_003557079.1| radical activating enzyme [Shewanella violacea DSS12] gi|293327570|dbj|BAJ02301.1| radical activating enzyme [Shewanella violacea DSS12] Length = 222 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 97/238 (40%), Gaps = 45/238 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56 MK Y + E+F T+QGEG G A+F R GC + C +CDT Sbjct: 1 MK-YPVNEVFETIQGEGFFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWDVLE 48 Query: 57 -----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 + G G R++ LI G + V+TGGEP + L Sbjct: 49 KNRVAPELVIQVDGEIG-RWSELTAEALINSFIRKG-FSANHVVITGGEPCIHDLTELTS 106 Query: 106 ALNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCD-------LKIKGGQELKL-VFPQV 156 LN +G+ +ET+GT E W+ VSPK ++ E+K V Sbjct: 107 QLNSQGYATQIETSGTFEVICSDKTWVTVSPKVNMKAGMAVLTQALERADEIKHPVATSK 166 Query: 157 NVSPENY----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ + I D + LQP+ T LA+ C + WRLS+QTHK++ I Sbjct: 167 HIDDLDELLEGIELDGKTICLQPISQK--PRATELAMKTCIER-NWRLSIQTHKYLNI 221 >gi|260768533|ref|ZP_05877467.1| queuosine Biosynthesis QueE Radical SAM [Vibrio furnissii CIP 102972] gi|260616563|gb|EEX41748.1| queuosine Biosynthesis QueE Radical SAM [Vibrio furnissii CIP 102972] Length = 246 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 96/237 (40%), Gaps = 43/237 (18%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 LY + E+F T+QGEG G AVF R C + C +CDT Sbjct: 24 TLYKVNEMFETIQGEGVFTGVPAVFVRLQECPV-----------GCAWCDTKQTWDAAPA 72 Query: 62 GGRYNVDQL--------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107 R + D++ A I E++ ++ V+TGGEP + VPL QA Sbjct: 73 DER-SFDEILVKTEDNPNWCSASAQQIIERYRAQGYTAKHIVITGGEPCIYDLVPLTQAF 131 Query: 108 NKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL-VFPQVNV 158 G +ET+GT W+ VSPK D+ ++ E+K V + ++ Sbjct: 132 EAIGCRCQIETSGTFAVQATENTWVTVSPKVAMKGKLPVVDVALQRANEIKHPVATEKDI 191 Query: 159 SPENYIGFDF-----ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 192 DNLDQLLARAGVPATTVVALQPISQK--PRATQLCIDTCIAR-NWRLSIQTHKYLSI 245 >gi|300724656|ref|YP_003713981.1| putative coenzyme PQQ synthesis protein with nitrogenase iron-molybdenum domain [Xenorhabdus nematophila ATCC 19061] gi|297631198|emb|CBJ91893.1| putative coenzyme PQQ synthesis protein with nitrogenase iron-molybdenum domain [Xenorhabdus nematophila ATCC 19061] Length = 223 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 94/240 (39%), Gaps = 49/240 (20%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57 +Y I EIF TLQGEG G +VF R GC + C +CDT Sbjct: 1 MIYPINEIFQTLQGEGVFTGVPSVFVRLQGCPV-----------GCSWCDTKHTWEKDAD 49 Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104 G QL ++ Q R+ V+TGGEP L PL Sbjct: 50 KQQVMENILLKTRDSDLWGVATAKQLINIFTRQG----YSARHIVITGGEPCLYDLRPLT 105 Query: 105 QALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ- 155 + L + G++ +ET+GT W+ VSPK +K E+K + Sbjct: 106 ETLEREGYQCQIETSGTHSIQCSDKTWVTVSPKVKMRGGYKVLPEAMKRADEIKHPVGRE 165 Query: 156 --VNVSPENYIGFDFE---RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E + D + +LQP+ EE T L I C WR S+QTHK++ I Sbjct: 166 RDIEALDELLVMLDGKSSPVIALQPISQK--EEATRLCIETCIAR-NWRFSMQTHKYLHI 222 >gi|157962169|ref|YP_001502203.1| radical SAM domain-containing protein [Shewanella pealeana ATCC 700345] gi|157847169|gb|ABV87668.1| Radical SAM domain protein [Shewanella pealeana ATCC 700345] Length = 222 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 104/238 (43%), Gaps = 45/238 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56 MK Y + E+F T+QGEG H G A+F R GC + C +CDT Sbjct: 1 MK-YPVNEVFETIQGEGTHTGVPAIFVRLQGCPV-----------GCSWCDTKQTWELLE 48 Query: 57 -----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 + GT G R++ + L+ G + V+TGGEP L L Q Sbjct: 49 DNRVAPDLVIQVDGTVG-RWSELTVEQLVSAFEDKG-FTAKLVVITGGEPCLYDLSELTQ 106 Query: 106 ALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDL-------KIKGGQELKL-VFPQV 156 L+ +G++ +ET+GT + D W+ VSPK + E+K V Q Sbjct: 107 YLHAQGYQTQIETSGTFDVLCHPDTWVTVSPKVNMKGGYAVLAQALNRANEIKHPVATQK 166 Query: 157 NVSPENYIGFDF----ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ + + D + LQP+ + T LA+ C + WRLSVQTHK++ I Sbjct: 167 HIDELDLLLEDINLTGKTVCLQPISQ--IPRATELAMKTCIER-NWRLSVQTHKYLNI 221 >gi|315180245|gb|ADT87159.1| Organic radical activating enzyme [Vibrio furnissii NCTC 11218] Length = 246 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 97/237 (40%), Gaps = 43/237 (18%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 LY + E+F T+QGEG G AVF R C + C +CDT Sbjct: 24 TLYKVNEMFETIQGEGVFTGVPAVFVRLQECPV-----------GCAWCDTKQTWDAAPA 72 Query: 62 GGRYNVDQL--------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107 R + D++ A I E++ ++ V+TGGEP + VPL QA Sbjct: 73 DER-SFDEILVKTEDNPNWCSASAQQIIERYRAQGYTAKHIVITGGEPCIYDLVPLTQAF 131 Query: 108 NKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL-VFPQVNV 158 G +ET+GT W+ VSPK D+ ++ E+K V + ++ Sbjct: 132 EAIGCRCQIETSGTFAVQATENTWVTVSPKVAMKGKLPVVDVALQRANEIKHPVATEKDI 191 Query: 159 SPENYIGF-----DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 192 DNLDQLLARAGVPETTVVALQPISQK--PRATQLCIDTCIAR-NWRLSIQTHKYLSI 245 >gi|117920607|ref|YP_869799.1| radical activating enzyme [Shewanella sp. ANA-3] gi|117612939|gb|ABK48393.1| radical activating enzyme [Shewanella sp. ANA-3] Length = 222 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 90/237 (37%), Gaps = 48/237 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y + E+F T+QGEG G A+F R GC + C +CDT Sbjct: 3 YPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDLLEEKK 51 Query: 57 --------IQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + G+ G + L D + R+ V+TGGEP + L Sbjct: 52 VSPEQVITVDGSVGRWANHTAQSLIDAFNAKG----YTARHVVITGGEPCMYDLNELTHT 107 Query: 107 LNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKLVFPQVNV 158 L+ GF +ET+GT E D W+ VSPK K E+K N Sbjct: 108 LHAAGFATQIETSGTFEVKCDADTWVTVSPKINMKGGYKVLAQALIRANEIKHPIATENH 167 Query: 159 SPENY-----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E I + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 168 IDELDELLKGIDVSAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221 >gi|188026339|ref|ZP_02961731.2| hypothetical protein PROSTU_03780 [Providencia stuartii ATCC 25827] gi|188022533|gb|EDU60573.1| hypothetical protein PROSTU_03780 [Providencia stuartii ATCC 25827] Length = 230 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 97/248 (39%), Gaps = 57/248 (22%) Query: 1 MKL------YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF 54 M + Y I EIF TLQGEG G AVF R GC + C +CDT Sbjct: 1 MTMPESAMNYPINEIFQTLQGEGVFTGVPAVFIRLQGCPV-----------GCSWCDTKH 49 Query: 55 VG-----------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 + + +L +L+++Q ++ V+TGGEP + Sbjct: 50 TWEKEESKATTLGDIALKTVDTDTWALADSHELINLMKKQG----YTAKHIVITGGEPCI 105 Query: 98 QVDVPLIQALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGCD-------LKIKGGQEL 149 +PL L +G++ +ET+GT W+ VSPK G I E+ Sbjct: 106 YDLLPLTCELENQGYQCQIETSGTYPIQCSDKTWVTVSPKVGMKGGLQVLTESINRANEI 165 Query: 150 KLVFPQVNVSPENYIGFDFER-------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202 K + E +R +LQP+ L T L I C WRLS+ Sbjct: 166 KHPVAREK-DIEELDKLLAKRTEKHAPVVALQPISQKSL--ATKLCIDTCIAR-NWRLSI 221 Query: 203 QTHKFIGI 210 QTHK++ I Sbjct: 222 QTHKYLNI 229 >gi|304408669|ref|ZP_07390290.1| Radical SAM domain protein [Shewanella baltica OS183] gi|307305498|ref|ZP_07585246.1| Radical SAM domain protein [Shewanella baltica BA175] gi|304352490|gb|EFM16887.1| Radical SAM domain protein [Shewanella baltica OS183] gi|306911801|gb|EFN42226.1| Radical SAM domain protein [Shewanella baltica BA175] Length = 222 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 92/235 (39%), Gaps = 44/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y + E+F T+QGEG G A+F R GC + C +CDT Sbjct: 3 YPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDVLEVNK 51 Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 + GT G D A + + R+ V+TGGEP + L + L+ Sbjct: 52 VTPEQVISVDGTIGRW--ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLRELTETLH 109 Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDL-------KIKGGQELKLVFPQVNVSP 160 +GF +ET+GT + D W+ VSPK + E+K N Sbjct: 110 NQGFATQIETSGTFDINCADDTWVTVSPKVNMKGGYKVLTQALNRANEIKHPIATENHIA 169 Query: 161 E-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E I + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 170 ELDELLQDIDISAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221 >gi|332140739|ref|YP_004426477.1| radical activating enzyme [Alteromonas macleodii str. 'Deep ecotype'] gi|327550761|gb|AEA97479.1| radical activating enzyme [Alteromonas macleodii str. 'Deep ecotype'] Length = 224 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 64/239 (26%), Positives = 102/239 (42%), Gaps = 43/239 (17%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56 M +I E+F T+QGEG H G ++F R GC + C +CDT Sbjct: 1 MSTLNINEMFETIQGEGAHTGVPSIFVRLQGCPV-----------GCPWCDTKHTWEIKP 49 Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 +G + Y + +DL+ + G ++ V+TGGEP + PL Sbjct: 50 DLSVTPEAVITKGQESETYFISNESDLLTQFGHEG-YVAKHVVITGGEPCMYDLRPLTTL 108 Query: 107 LNKRGFEIAVETNGTIEPPQG-IDWICVSPKAGCDL-------KIKGGQELKL------V 152 L+ +G+ +ET+GT E ++ VSPK ++ E+K Sbjct: 109 LHDKGYTTQIETSGTFEILCDERTYVTVSPKINMKGGYDVLISALERANEIKHPIAMQKH 168 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +++ N ++ LQP+ + T LA+ C + WRLS+QTHK+IGI Sbjct: 169 IDELDALLANVSSLKGKQVCLQPISQ--QKRATELAVRTCIER-NWRLSLQTHKYIGIE 224 >gi|89073954|ref|ZP_01160460.1| putative organic radical activating enzyme [Photobacterium sp. SKA34] gi|89050282|gb|EAR55786.1| putative organic radical activating enzyme [Photobacterium sp. SKA34] Length = 222 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 95/236 (40%), Gaps = 43/236 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y I E+F T+QGEG G A+F R C + C +CDT Sbjct: 1 MYKINEVFETIQGEGVFTGVPAIFVRLQVCPV-----------GCSWCDTKQTWT-AEPQ 48 Query: 63 GRYNVDQL--------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 N+DQ+ A+ + + + ++ V+TGGEP + PL QAL Sbjct: 49 DLANLDQIMAKTGDSPLWTNLDANGVVQLLQDQKYTAKHVVITGGEPCIYDLRPLTQALE 108 Query: 109 KRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDLKIK-------GGQELKL------VFP 154 GF +ET+GT + W+ VSPK K+ E+K Sbjct: 109 DAGFNCQIETSGTSDIQTSENTWVTVSPKINMKAKLPVLVSSLARANEIKHPVGTSKDIE 168 Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 Q++ + +LQP+ T L I C Q WRLS+QTHK++ I Sbjct: 169 QLDALIDGVTLKPDVTIALQPISQK--PRATELCIETCIQR-NWRLSIQTHKYLAI 221 >gi|288799933|ref|ZP_06405392.1| GntS [Prevotella sp. oral taxon 299 str. F0039] gi|288333181|gb|EFC71660.1| GntS [Prevotella sp. oral taxon 299 str. F0039] Length = 192 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 78/212 (36%), Positives = 105/212 (49%), Gaps = 30/212 (14%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF TLQGEG H GR AVF RF+GCNL C FCDT Sbjct: 2 RVNEIFYTLQGEGAHTGRAAVFLRFAGCNLT-----------CSFCDTQH--------ET 42 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 Y +++ + + V+TGGEP +Q+ LI L+ G ++ +ETNGTI P Sbjct: 43 YTSMSEEEIV---ISINKFPSTWVVITGGEPTIQLTESLIHKLHAIGKKVQIETNGTIIP 99 Query: 125 PQGIDWICVSPK----AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 P DWI VSPK ++K + ELK+V+ N + Y + + LQP D Sbjct: 100 PPNTDWITVSPKFEYCKRAEIKAERINELKVVYDGSN-NMSVYETIKADHYFLQPCDLQD 158 Query: 181 LEENTNLA---ISYCFQNPKWRLSVQTHKFIG 209 +N + I Y +NPKWRLS+QTHK + Sbjct: 159 ETKNKKIINQVIEYIKKNPKWRLSLQTHKILN 190 >gi|261210910|ref|ZP_05925200.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. RC341] gi|260839885|gb|EEX66485.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. RC341] Length = 222 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 96/236 (40%), Gaps = 43/236 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56 +Y I E+F T+QGEG G AVF R GC + C +CDT Sbjct: 1 MYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWESLDAD 49 Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 ++ + + D+++ G + ++ V+TGGEP + L QA Sbjct: 50 QTSFSQILLKTSDAPTWCHASAQDVVQRYQTQG-YQAKHIVITGGEPCIYDLTELTQAFE 108 Query: 109 KRGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159 G +ET+GT E + W+ VSPK K+ E+K V + ++ Sbjct: 109 SIGCHCQIETSGTYEVRATPLTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 168 Query: 160 PENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 169 NLDELLVRAKVTEKTVVALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 221 >gi|260772755|ref|ZP_05881671.1| queuosine Biosynthesis QueE Radical SAM [Vibrio metschnikovii CIP 69.14] gi|260611894|gb|EEX37097.1| queuosine Biosynthesis QueE Radical SAM [Vibrio metschnikovii CIP 69.14] Length = 224 Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 93/238 (39%), Gaps = 43/238 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M LY + EIF T+QGEG G AVF R C + C +CDT Sbjct: 1 MTLYKVNEIFETIQGEGVFTGVPAVFVRLQQCPV-----------GCAWCDTKQTW-DAE 48 Query: 61 KGGRYNVDQL--------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + + +Q+ A+ I Q+ ++ V+TGGEP L VPL +A Sbjct: 49 PQDQRSFEQIIVKQGDSPTWCQGSAEQIVAQYQQQGYTAKHIVITGGEPCLYDLVPLTEA 108 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL------V 152 G + +ET+GT E W+ VSPK K+ E+K Sbjct: 109 FEAIGCQCQIETSGTFEIKASAKTWVTVSPKIAMKGKLPIVPSALQRANEIKHPVGTEKD 168 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 Q+ +LQP+ T L I C WRLS+QTHK++ I Sbjct: 169 IAQLEALLAQVAISPDTIIALQPISQK--PRATQLCIETCITR-NWRLSIQTHKYLNI 223 >gi|126090177|ref|YP_001041658.1| hypothetical protein Sbal_4540 [Shewanella baltica OS155] gi|126174470|ref|YP_001050619.1| radical activating enzyme [Shewanella baltica OS155] gi|125997675|gb|ABN61750.1| radical activating enzyme [Shewanella baltica OS155] gi|125999833|gb|ABN63903.1| hypothetical protein Sbal_4540 [Shewanella baltica OS155] Length = 222 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 92/235 (39%), Gaps = 44/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y + E+F T+QGEG G A+F R GC + C +CDT Sbjct: 3 YPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDVLEVNK 51 Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 + GT G D A + + R+ V+TGGEP + L + L+ Sbjct: 52 VMPEQVISVDGTIGRW--ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLCELTETLH 109 Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDL-------KIKGGQELKLVFPQVNVSP 160 +GF +ET+GT + D W+ VSPK + E+K N Sbjct: 110 SQGFATQIETSGTFDINCADDTWVTVSPKVNMKGGYKVLTQALNRANEIKHPIATENHIA 169 Query: 161 E-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E I + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 170 ELDELLQDIDISAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221 >gi|238919074|ref|YP_002932588.1| hypothetical protein NT01EI_1143 [Edwardsiella ictaluri 93-146] gi|238868642|gb|ACR68353.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 223 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 96/235 (40%), Gaps = 43/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I E+F +LQGEG + G A+F R GC + C +CD+ Q + Sbjct: 3 YPINEVFQSLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDSQHTWHQRPE-R 50 Query: 64 RYNVDQLADLIEE--------------QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 + ++ Q+ + E + R V+TGGEP + +PL AL + Sbjct: 51 QADLAQIVEKTAESEAWASADAAALVALLRQRGYQARRVVITGGEPCMYDLLPLTTALEQ 110 Query: 110 RGFEIAVETNGTIEPPQGI-DWICVSPKAGCDL-------KIKGGQELKLVFPQV----- 156 G+ +ET+GT W+ VSPK G ++ E+K + Sbjct: 111 GGYRCQIETSGTHPVRCSAQTWVTVSPKVGMRGGMEVLTDALRRANEIKHPVARARDIEA 170 Query: 157 -NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + G +LQP+ EE T L I C WRLS+QTHK++ I Sbjct: 171 LDALLARLDGELPPVVALQPISCK--EEATRLCIETCLAR-NWRLSMQTHKYLNI 222 >gi|212711380|ref|ZP_03319508.1| hypothetical protein PROVALCAL_02452 [Providencia alcalifaciens DSM 30120] gi|212686109|gb|EEB45637.1| hypothetical protein PROVALCAL_02452 [Providencia alcalifaciens DSM 30120] Length = 223 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 98/238 (41%), Gaps = 42/238 (17%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-- 58 MK Y I EIF TLQGEG G AVF R GC + C +CDT + Sbjct: 1 MK-YPINEIFQTLQGEGVFTGVPAVFIRLQGCPV-----------GCSWCDTKQTWDKEP 48 Query: 59 -----------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107 T+ + A+ + + + ++ V+TGGEP + L Q L Sbjct: 49 AKESTLGDIALKTQDSDFWAMSDAESLIQLMLQNGYTAKHIVITGGEPCIYDLTALTQTL 108 Query: 108 NKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL-VFPQVNV 158 GF+ +ET+GT W+ VSPK G + I E+K V + ++ Sbjct: 109 EANGFQCQIETSGTYPILCTENTWVTVSPKVGMKGGLQVLEQAINRANEIKHPVAREKDI 168 Query: 159 SPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + + +LQP+ T L I C Q WRLS+QTHK++ I+ Sbjct: 169 EALDQLLSLRTQGQLPIVALQPISQKTS--ATKLCIDTCIQR-NWRLSIQTHKYLNIQ 223 >gi|329295553|ref|ZP_08252889.1| Radical SAM domain-containing protein [Plautia stali symbiont] Length = 223 Score = 227 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 98/238 (41%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y I E+F TLQGEG + G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWETRADLE 51 Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 ++ G + L + I+ Q T R+ V+TGGEP + PL +A Sbjct: 52 TSLGDILVKTVESDAWGSADAATLIETIQRQGWTA----RHLVITGGEPAIFDLRPLTEA 107 Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155 L GF+ +ET+GT E W+ VSPK ++ E+K + Sbjct: 108 LETAGFQCQIETSGTHEVHCSAATWVTVSPKVNMRGGYDVLPQALQRADEIKHPVARERD 167 Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 V G E+ +LQP+ E T L I C WRLS+QTHK++ I Sbjct: 168 VEALDALLAGLQDEKKRIVALQPISR--GEAATRLCIETCIVR-NWRLSMQTHKYLNI 222 >gi|294635382|ref|ZP_06713876.1| radical SAM domain protein [Edwardsiella tarda ATCC 23685] gi|291091269|gb|EFE23830.1| radical SAM domain protein [Edwardsiella tarda ATCC 23685] Length = 249 Score = 227 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 102/235 (43%), Gaps = 43/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G A+F R GC + C +CD+ Q Sbjct: 29 YPINEIFHSLQGEGFYTGLPAIFIRLQGCPV-----------GCSWCDSKHTWQQDAV-R 76 Query: 64 RYNVDQLADLIEE--QWITGE------------KEGRYCVLTGGEPLLQVDVPLIQALNK 109 + ++Q+ + E W + + R+ V+TGGEP L +PL AL + Sbjct: 77 QVALEQVVEKAAESDAWASADVATLCALLQQRGYAARHVVITGGEPCLHDLLPLTLALEQ 136 Query: 110 RGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQVNVSP 160 G++ +ET+GT W+ VSPK ++ E+K V + +++ Sbjct: 137 AGYQCQIETSGTHPVRCSEQTWVTVSPKVAMRGGMAVLTSALRRANEIKHPVARERDIAA 196 Query: 161 ENYIGFDF-----ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + +LQP+ E T L I C WRLS+QTHK++ I Sbjct: 197 LDALLATLGEALPQVVALQPISCK--EGATRLCIDTCLAR-NWRLSMQTHKYLHI 248 >gi|90579565|ref|ZP_01235374.1| putative organic radical activating enzyme [Vibrio angustum S14] gi|90439139|gb|EAS64321.1| putative organic radical activating enzyme [Vibrio angustum S14] Length = 222 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 96/236 (40%), Gaps = 43/236 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y I E+F T+QGEG G A+F R C + C +CDT Sbjct: 1 MYKINEVFETIQGEGVFTGVPAIFVRLQVCPV-----------GCSWCDTKQTWT-AEPQ 48 Query: 63 GRYNVDQL--------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 ++DQ+ A+ + + + ++ V+TGGEP + PL QAL Sbjct: 49 DLVSLDQIMAKTGDSPLWTNLDANGVVQLLQDQKYTAKHVVITGGEPCIYDLRPLTQALE 108 Query: 109 KRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDLKIK-------GGQELKL------VFP 154 + GF +ET+GT E W+ VSPK K+ E+K Sbjct: 109 EAGFNCQIETSGTSEIQTSDNTWVTVSPKINMKAKLPVLASSLARANEIKHPVGTSKDIE 168 Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 Q++ + +LQP+ T L I C Q WRLS+QTHK++ I Sbjct: 169 QLDALIDGVTLKPDVTIALQPISQKT--RATELCIETCIQR-NWRLSIQTHKYLAI 221 >gi|160875275|ref|YP_001554591.1| radical activating enzyme [Shewanella baltica OS195] gi|160860797|gb|ABX49331.1| radical activating enzyme [Shewanella baltica OS195] gi|315267469|gb|ADT94322.1| Radical SAM domain protein [Shewanella baltica OS678] Length = 222 Score = 227 bits (580), Expect = 8e-58, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 92/235 (39%), Gaps = 44/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y + E+F T+QGEG G A+F R GC + C +CDT Sbjct: 3 YPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDVLEVNK 51 Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 + GT G D A + + R+ V+TGGEP + L + L+ Sbjct: 52 VTPEQVITVDGTIGRW--ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLRELTETLH 109 Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDL-------KIKGGQELKLVFPQVNVSP 160 +GF +ET+GT + D W+ VSPK + E+K N Sbjct: 110 SQGFATQIETSGTFDINCADDTWVTVSPKVNMKGGYKVLAQALNRANEIKHPIATENHIA 169 Query: 161 ENY-----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E I + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 170 ELDELLQGIDISTKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221 >gi|146292953|ref|YP_001183377.1| radical activating enzyme [Shewanella putrefaciens CN-32] gi|145564643|gb|ABP75578.1| radical activating enzyme [Shewanella putrefaciens CN-32] Length = 222 Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 92/235 (39%), Gaps = 44/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y + E+F T+QGEG G A+F R GC + C +CDT Sbjct: 3 YPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDVLEANK 51 Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 + GT G + AD + + R+ V+TGGEP + L + L+ Sbjct: 52 VSPEQVITVDGTIGRW--AEHTADSLIAAFNAKGFTARHIVITGGEPCMYDLRELTETLH 109 Query: 109 KRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDL-------KIKGGQELKLVFPQVNVSP 160 +GF +ET+GT E W+ VSPK + E+K N Sbjct: 110 SQGFATQIETSGTFEVNCADNTWVTVSPKVNMKGGYPVLAQALNRANEIKHPIATENHID 169 Query: 161 E-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E I + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 170 ELDELLQDIDISAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLDI 221 >gi|262404009|ref|ZP_06080564.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. RC586] gi|262349041|gb|EEY98179.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. RC586] Length = 222 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 94/236 (39%), Gaps = 43/236 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57 +Y I E+F T+QGEG G AVF R GC + C +CDT Sbjct: 1 MYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWDMLESE 49 Query: 58 ---------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 + + D+++ T E + ++ V+TGGEP + L Q Sbjct: 50 QTDFSHILLKAGDSPTWCQASAQDVVQRYQ-TQEYQAKHIVITGGEPCIYDLTELTQVFE 108 Query: 109 KRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159 G + +ET+GT E W+ VSPK K+ E+K V + ++ Sbjct: 109 AIGCQCQIETSGTYEILATPNTWVTVSPKVAMKGKLPILDSSLQRANEIKHPVATENDIE 168 Query: 160 PENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 169 NLDALLLRAKVSSATVIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 221 >gi|153825305|ref|ZP_01977972.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|183179363|ref|ZP_02957574.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|149741133|gb|EDM55192.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|183012774|gb|EDT88074.1| conserved hypothetical protein [Vibrio cholerae MZO-3] Length = 245 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 95/236 (40%), Gaps = 43/236 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56 LY I E+F T+QGEG G AVF R GC + C +CDT Sbjct: 24 LYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSD 72 Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 ++ + + ++++ G + ++ V+TGGEP + L QA Sbjct: 73 QTSFSQILLKTSDAPTWCQASAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFE 131 Query: 109 KRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159 G +ET+GT E W+ VSPK K+ E+K V + ++ Sbjct: 132 AMGCRCQIETSGTYEVRATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 191 Query: 160 PENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 192 NLDELLARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244 >gi|330445748|ref|ZP_08309400.1| conserved protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489939|dbj|GAA03897.1| conserved protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 222 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 95/236 (40%), Gaps = 43/236 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y I E+F T+QGEG G A+F R C + C +CDT Sbjct: 1 MYKINEVFETIQGEGVFTGVPAIFVRLQVCPV-----------GCSWCDTKQTWT-AEPQ 48 Query: 63 GRYNVDQL--------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 +++Q+ A+ + + I + ++ V+TGGEP + PL +AL Sbjct: 49 DLASLEQIMAKTEDSPLWTQLDANGVVQLLIDQKYTAKHVVITGGEPCIYDLRPLTEALE 108 Query: 109 KRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDLKIK-------GGQELKL------VFP 154 GF +ET+GT E W+ VSPK K+ E+K Sbjct: 109 AAGFNCQIETSGTSEIQASNNTWVTVSPKINMKAKLPVLASALERANEIKHPVGTSKDIE 168 Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 Q++ E +LQP+ T L I C WRLS+QTHK++ I Sbjct: 169 QLDALLEGKNLKSDITIALQPISQK--PRATELCIETCIAR-NWRLSIQTHKYLAI 221 >gi|153000640|ref|YP_001366321.1| radical activating enzyme [Shewanella baltica OS185] gi|151365258|gb|ABS08258.1| conserved hypothetical protein [Shewanella baltica OS185] Length = 222 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 92/235 (39%), Gaps = 44/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y + E+F T+QGEG G A+F R GC + C +CDT Sbjct: 3 YPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDVLEANK 51 Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 + GT G D A + + R+ V+TGGEP + L + L+ Sbjct: 52 VTPEQVISVDGTIGRW--ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLRELTETLH 109 Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDL-------KIKGGQELKLVFPQVNVSP 160 +GF +ET+GT + D W+ VSPK + E+K N Sbjct: 110 SQGFATQIETSGTFDINCADDTWVTVSPKVNMKGGYKVLAQALNRANEIKHPIATENHIA 169 Query: 161 E-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E I + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 170 ELDELLQDIDISTKAICLQPISQK--PRATELAMKVCITR-NWRLSIQTHKYLNI 221 >gi|120598962|ref|YP_963536.1| radical activating enzyme [Shewanella sp. W3-18-1] gi|120559055|gb|ABM24982.1| radical activating enzyme [Shewanella sp. W3-18-1] gi|319426518|gb|ADV54592.1| Radical SAM domain protein [Shewanella putrefaciens 200] Length = 222 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 92/235 (39%), Gaps = 44/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y + E+F T+QGEG G A+F R GC + C +CDT Sbjct: 3 YPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDVLEANK 51 Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 + GT G + AD + + R+ V+TGGEP + L + L+ Sbjct: 52 VSPEQVITVDGTIGRW--AEHTADSLIAAFNAEGFTARHIVITGGEPCMYDLRELTETLH 109 Query: 109 KRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDL-------KIKGGQELKLVFPQVNVSP 160 +GF +ET+GT E W+ VSPK + E+K N Sbjct: 110 SQGFATQIETSGTFEVNCADNTWVTVSPKVNMKGGYPVLAQALNRANEIKHPIATENHID 169 Query: 161 E-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E I + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 170 ELDELLQDIDISAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLDI 221 >gi|290476591|ref|YP_003469496.1| putative coenzyme PQQ synthesis protein with nitrogenase iron-molybdenum domain [Xenorhabdus bovienii SS-2004] gi|289175929|emb|CBJ82732.1| putative coenzyme PQQ synthesis protein with nitrogenase iron-molybdenum domain [Xenorhabdus bovienii SS-2004] Length = 223 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 91/240 (37%), Gaps = 49/240 (20%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57 +Y I EIF TLQGEG G +VF R GC + C +CDT Sbjct: 1 MIYPINEIFQTLQGEGVFTGVPSVFIRLQGCPV-----------GCSWCDTKHTWEKEAD 49 Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104 G Q+ +L Q R+ V+TGGEP L PL Sbjct: 50 KQQPMENILVKSQDSDTWGAATARQIINLFIRQG----YTARHIVVTGGEPCLYNLRPLT 105 Query: 105 QALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ- 155 + L G++ +ET+GT W+ VSPK + E+K + Sbjct: 106 ETLESEGYQCQIETSGTHAIQCSEKTWVTVSPKVKMRGGYQVLPEAMNRANEIKHPVGRE 165 Query: 156 --VNVSPENYIGFDFE---RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E D + +LQP+ EE T L I C WR S+QTHK++ I Sbjct: 166 RDIEALDELLTMLDEKADPVIALQPISQK--EEATRLCIETCIAR-NWRFSMQTHKYLNI 222 >gi|157375186|ref|YP_001473786.1| radical activating enzyme [Shewanella sediminis HAW-EB3] gi|157317560|gb|ABV36658.1| radical activating enzyme [Shewanella sediminis HAW-EB3] Length = 222 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 101/238 (42%), Gaps = 45/238 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56 MK Y + E+F T+QGEG G A+F R GC + C +CDT Sbjct: 1 MK-YPVNEVFETIQGEGFFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWDVIE 48 Query: 57 -----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 + GT G + A+ + + ++ V+TGGEP L +PL + Sbjct: 49 ENRVAPELVIQVDGTIGRWAELT--AEELISNFKAKGFTAKHVVITGGEPCLHDLIPLTE 106 Query: 106 ALNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQV 156 +LN G+ +ET+GT E W+ VSPK + E+K V Q Sbjct: 107 SLNLSGYATQIETSGTFEVICSDKTWVTVSPKINMKAGLPILNQALIRANEIKHPVATQA 166 Query: 157 NVSPENY----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ + I D + LQP+ T LA+ C + WRLS+QTHK++ I Sbjct: 167 HIDDLDCLLKGISLDEKTICLQPISQK--SRATELAMRVCIER-NWRLSIQTHKYLEI 221 >gi|117620682|ref|YP_856352.1| radical activating enzyme [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562089|gb|ABK39037.1| radical activating enzyme [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 237 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 63/238 (26%), Positives = 95/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I EIF T+QGEG G A+F R GC + C +CDT + Sbjct: 17 YPINEIFQTIQGEGVFTGLPAIFVRLQGCPV-----------GCPWCDTRHTWVVDPARE 65 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + + + +Q+ ++ + R+ V+TGGEP L L A Sbjct: 66 VGVQAVLDCSNESDGWSKMSTEQILASFQQLG----YQARHVVITGGEPCLYDLQDLSAA 121 Query: 107 LNKRGFEIAVETNGTIEPPQG-IDWICVSPKAGCDL-------KIKGGQELKLVFPQVNV 158 L + G+++ +ET+GT E W+ VSPK ++ E+K Sbjct: 122 LIEAGYQVQIETSGTSEIQTHEQTWVTVSPKINMKGGLPVLVSALERANEIKHPVATERH 181 Query: 159 SPENYIGFDFER------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E R +LQP+ T LA++ C WRLS+QTHK++ I Sbjct: 182 VEELDALLATARLRENVVIALQPISQK--PRATQLAMTTCIAR-NWRLSIQTHKYLDI 236 >gi|153212696|ref|ZP_01948353.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124116346|gb|EAY35166.1| conserved hypothetical protein [Vibrio cholerae 1587] Length = 245 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 95/236 (40%), Gaps = 43/236 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56 LY I E+F T+QGEG G AVF R GC + C +CDT Sbjct: 24 LYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSD 72 Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 ++ + + ++++ G + ++ V+TGGEP + L QA Sbjct: 73 QTSFSQILLKTSDAPTWCQASAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFE 131 Query: 109 KRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159 G +ET+GT E W+ VSPK K+ E+K V + ++ Sbjct: 132 AMGCRCQIETSGTYEVYATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 191 Query: 160 PENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 192 NLDELLARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244 >gi|217973439|ref|YP_002358190.1| radical activating enzyme [Shewanella baltica OS223] gi|217498574|gb|ACK46767.1| radical activating enzyme [Shewanella baltica OS223] Length = 222 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 92/235 (39%), Gaps = 44/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y + E+F T+QGEG G A+F R GC + C +CDT Sbjct: 3 YPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDVLEVNK 51 Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 + GT G D A + + R+ V+TGGEP + L + L+ Sbjct: 52 VMPEQVISVDGTIGRW--ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLCELTETLH 109 Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDL-------KIKGGQELKLVFPQVNVSP 160 +GF +ET+GT + D W+ VSPK + E+K N Sbjct: 110 SQGFATQIETSGTFDINCADDTWVTVSPKVNMKGGYKVLTQALNRANEIKHPIATENHIA 169 Query: 161 ENY-----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E I + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 170 ELDELLQGIDISTKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221 >gi|269967852|ref|ZP_06181896.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269827557|gb|EEZ81847.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 226 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 95/235 (40%), Gaps = 41/235 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 LY + E+F T+QGEG G AVF R C + C +CDT Sbjct: 5 LYKLNEMFETIQGEGVFTGVPAVFVRLQECPV-----------GCSWCDTKQTWYADEND 53 Query: 63 GRYNVDQL-------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 R D L A+ I EQ+ ++ V+TGGEP + PL +A Sbjct: 54 QRQIGDILVKTEDSPTWCVASAENIVEQYQQQGFNAKHIVITGGEPCIYDLRPLTKAFED 113 Query: 110 RGFEIAVETNGTIEP-PQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSP 160 G + +ET+GT E W+ VSPK K+ E+K V Q ++ Sbjct: 114 MGCQCQIETSGTSEVITSENTWVTVSPKVAMKGKLPVLNSALERANEIKHPVGTQKDIDH 173 Query: 161 ENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + +LQP+ T L I C WRLSVQTHK++ I Sbjct: 174 LDDLLANANVAAETIIALQPISQK--PRATQLCIDTCIAR-NWRLSVQTHKYLSI 225 >gi|254228266|ref|ZP_04921695.1| Organic radical activating enzymes [Vibrio sp. Ex25] gi|262394169|ref|YP_003286023.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. Ex25] gi|151939339|gb|EDN58168.1| Organic radical activating enzymes [Vibrio sp. Ex25] gi|262337763|gb|ACY51558.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. Ex25] Length = 226 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 68/236 (28%), Positives = 95/236 (40%), Gaps = 41/236 (17%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 LY + E+F T+QGEG G AVF R C + C +CDT Sbjct: 4 TLYKLNEMFETIQGEGVFTGVPAVFVRLQECPV-----------GCSWCDTKQTWYADEN 52 Query: 62 GGRYNVDQL-------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 R D L A+ I EQ+ ++ V+TGGEP + PL +A Sbjct: 53 DQRQIGDILVKTEDSPTWCVASAENIVEQYQLQGFNAKHIVITGGEPCIYDLRPLTKAFE 112 Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159 G + +ET+GT E W+ VSPK K+ E+K V Q ++ Sbjct: 113 DMGCQCQIETSGTSEVITSENTWVTVSPKVAMKGKLPVLNSALERANEIKHPVGTQKDID 172 Query: 160 PENYIGFDF-----ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + +LQP+ T L I C WRLSVQTHK++ I Sbjct: 173 HLDELLANANVAVETVIALQPISQK--PRATQLCIETCIAR-NWRLSVQTHKYLSI 225 >gi|121587998|ref|ZP_01677750.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|153828785|ref|ZP_01981452.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|229515737|ref|ZP_04405196.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae TMA 21] gi|229521471|ref|ZP_04410890.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae TM 11079-80] gi|229529559|ref|ZP_04418949.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae 12129(1)] gi|121547739|gb|EAX57830.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|148875738|gb|EDL73873.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|229333333|gb|EEN98819.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae 12129(1)] gi|229341569|gb|EEO06572.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae TM 11079-80] gi|229347506|gb|EEO12466.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae TMA 21] Length = 245 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 95/236 (40%), Gaps = 43/236 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56 LY I E+F T+QGEG G AVF R GC + C +CDT Sbjct: 24 LYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSD 72 Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 ++ + + ++++ G + ++ V+TGGEP + L QA Sbjct: 73 QTSFSQILLKTSDAPTWCQASAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFE 131 Query: 109 KRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159 G +ET+GT E W+ VSPK K+ E+K V + ++ Sbjct: 132 AMGCRCQIETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 191 Query: 160 PENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 192 NLDELLARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244 >gi|229523533|ref|ZP_04412938.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae bv. albensis VL426] gi|254225344|ref|ZP_04918956.1| conserved hypothetical protein [Vibrio cholerae V51] gi|125622185|gb|EAZ50507.1| conserved hypothetical protein [Vibrio cholerae V51] gi|229337114|gb|EEO02131.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae bv. albensis VL426] Length = 245 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 95/236 (40%), Gaps = 43/236 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56 LY I E+F T+QGEG G AVF R GC + C +CDT Sbjct: 24 LYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSD 72 Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 ++ + + ++++ G + ++ V+TGGEP + L QA Sbjct: 73 QTSFSQILLKTSDAPTWCQATAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFE 131 Query: 109 KRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159 G +ET+GT E W+ VSPK K+ E+K V + ++ Sbjct: 132 AMGCRCQIETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 191 Query: 160 PENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 192 NLDELLARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244 >gi|86141192|ref|ZP_01059738.1| hypothetical protein MED217_04222 [Leeuwenhoekiella blandensis MED217] gi|85831751|gb|EAQ50206.1| hypothetical protein MED217_04222 [Leeuwenhoekiella blandensis MED217] Length = 213 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 62/216 (28%), Positives = 98/216 (45%), Gaps = 27/216 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 +L + E F T+QGEG H G A F R GC++ C +CD + Sbjct: 17 ELLPLMEEFYTIQGEGYHTGTPAYFIRVGGCDV-----------GCHWCDVK----ESWD 61 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + + A ++ +K + V+TGGEPL+ L L G ++ +ET+G Sbjct: 62 AAIHPPTEAAAIVA----NAKKYSKTIVITGGEPLMWDMNHLTSMLKAEGLQVHIETSGA 117 Query: 122 IEPPQGIDWICVSPKAGCDLK---IKGGQELK-LVFPQVNVSPENYIGFDF---ERFSLQ 174 E DWIC+SPK K + ELK +++ + + + + LQ Sbjct: 118 YELSGHWDWICLSPKKRMLPKPRIYEEAHELKVIIYNKSDFAFAEEHAAKVNGNCQLFLQ 177 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P + E+ T L + Y NPKW++S+QTHK++ I Sbjct: 178 P-EWSVREKMTPLIVDYVMANPKWKVSLQTHKYLNI 212 >gi|297578950|ref|ZP_06940878.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297536544|gb|EFH75377.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 245 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 95/236 (40%), Gaps = 43/236 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56 LY I E+F T+QGEG G AVF R GC + C +CDT Sbjct: 24 LYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSD 72 Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 ++ + + ++++ G + ++ V+TGGEP + L QA Sbjct: 73 QTSFSQILLKTSDAPTWCQATAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFE 131 Query: 109 KRGFEIAVETNGTIEPPQ-GIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159 G +ET+GT E W+ VSPK K+ E+K V + ++ Sbjct: 132 AIGCRCQIETSGTYEVCATDNTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 191 Query: 160 PENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 192 NLDELLARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244 >gi|145298762|ref|YP_001141603.1| radical activating enzyme [Aeromonas salmonicida subsp. salmonicida A449] gi|142851534|gb|ABO89855.1| radical activating enzyme [Aeromonas salmonicida subsp. salmonicida A449] Length = 250 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 63/238 (26%), Positives = 95/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I EIF T+QGEG G A+F R GC + C +CDT I Sbjct: 30 YPINEIFQTIQGEGIFTGLPAIFVRLQGCPV-----------GCPWCDTRHTWIVDPARE 78 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + + + DQ+ ++ + R+ V+TGGEP L L Sbjct: 79 VGVQAVLDCSNESDSWSKMSTDQILASFQQLG----YQARHVVITGGEPCLYDLHELSTV 134 Query: 107 LNKRGFEIAVETNGTIEPPQ-GIDWICVSPKAGCDL-------KIKGGQELKL------V 152 L G+++ +ET+GT E W+ VSPK G ++ E+K Sbjct: 135 LLAAGYQVQIETSGTSEIKTHDSTWVTVSPKIGMKGGLPVLVSALERANEIKHPVATERH 194 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +++ +LQP+ T LA++ C WRLS+QTHK++ I Sbjct: 195 IEELDALLATATLRPDVEIALQPISQK--PRATQLAMAVCIAR-NWRLSIQTHKYLDI 249 >gi|304413345|ref|ZP_07394818.1| radical SAM superfamily domain-containing hypothetical protein [Candidatus Regiella insecticola LSR1] gi|304284188|gb|EFL92581.1| radical SAM superfamily domain-containing hypothetical protein [Candidatus Regiella insecticola LSR1] Length = 265 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 71/236 (30%), Positives = 101/236 (42%), Gaps = 40/236 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y I EIF +LQGEG A+F R GC + C +CDT Sbjct: 42 YPINEIFQSLQGEGYFTNVPAIFIRLQGCPV-----------ACSWCDTKHTWDIKKDKE 90 Query: 57 --IQGTKGGRYNVDQLADLIEEQWIT---GEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111 IQG D ++ E+Q + + + R+ V+TGGEP L PL L + G Sbjct: 91 IDIQGITVKTVAKDTWSNANEQQLVAICKEKYQARHVVITGGEPCLYDLQPLTSLLEENG 150 Query: 112 FEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQVNVSPEN 162 + +ET+GT W+ VSPK G D ++ E+K V + ++ N Sbjct: 151 YRCQIETSGTHPVRCSTASWVTVSPKIGMKGGLKLLDQALQRADEIKHPVARERDIERLN 210 Query: 163 YI-----GFDFERFSLQPMD--GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + +LQP+ EE T L I C ++ WRLSVQ HK++ IR Sbjct: 211 NLLDKLNDGKKPVIALQPIRKTEKESEEATKLCIETCIKH-NWRLSVQMHKYLKIR 265 >gi|212635182|ref|YP_002311707.1| Radical activating enzyme [Shewanella piezotolerans WP3] gi|212556666|gb|ACJ29120.1| Radical activating enzyme [Shewanella piezotolerans WP3] Length = 222 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 63/235 (26%), Positives = 95/235 (40%), Gaps = 44/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y + E+F T+QGEG G A+F R GC + C +CDT Sbjct: 3 YPVNEVFETIQGEGYFTGVPAIFVRLQGCPV-----------GCAWCDTKHTWDVIEENR 51 Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 + GT G R++ L+ G ++ V+TGGEP + L+ Sbjct: 52 VAPELVIQVDGTIG-RWSELSSEQLVAAFKSKG-FTAKHIVITGGEPCMYDLTEFTHYLH 109 Query: 109 KRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDL-------KIKGGQELKLVFPQVNVSP 160 + G++ +ET+GT E W+ VSPK ++ E+K N Sbjct: 110 QMGYQTQIETSGTFEVACDSGTWVTVSPKINMKGGYKVLAQALERANEIKHPIATRNHID 169 Query: 161 E-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E I + + LQP+ T LA+ C + WRLS+QTHK++ I Sbjct: 170 ELDELLADIDINDKTVCLQPISQK--ARATELAMKTCIER-NWRLSIQTHKYLDI 221 >gi|330830002|ref|YP_004392954.1| Radical activating enzyme [Aeromonas veronii B565] gi|328805138|gb|AEB50337.1| Radical activating enzyme [Aeromonas veronii B565] Length = 230 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 95/235 (40%), Gaps = 43/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I EIF T+QGEG G A+F R GC + C +CDT + Sbjct: 10 YPINEIFQTIQGEGIFTGLPAIFVRLQGCPV-----------GCPWCDTRHTWVVDPARE 58 Query: 58 --------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 + + ++ A +I+ G + R+ V+TGGEP L L AL Sbjct: 59 VGKAAVLDRSNESDCWSQLSTAQIIKSFGELG-YQARHVVITGGEPCLYDLHELSSALLA 117 Query: 110 RGFEIAVETNGTIEPPQG-IDWICVSPKAGCDL-------KIKGGQELKLVFPQVNVSPE 161 G+++ +ET+GT E W+ VSPK G ++ E+K + E Sbjct: 118 AGYQVQIETSGTSEIKTHEQTWVTVSPKIGMKGGLPVLVSALERANEIKHPVATEHHIEE 177 Query: 162 NYIGFDFER------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 178 LDTLLATATLRPDVVIALQPISQK--PRATQLAMDTCIAR-NWRLSIQTHKYLDI 229 >gi|121728537|ref|ZP_01681560.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147675014|ref|YP_001216924.1| hypothetical protein VC0395_A0978 [Vibrio cholerae O395] gi|254286183|ref|ZP_04961143.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|121629201|gb|EAX61641.1| conserved hypothetical protein [Vibrio cholerae V52] gi|146316897|gb|ABQ21436.1| conserved hypothetical protein [Vibrio cholerae O395] gi|150423852|gb|EDN15793.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|227013282|gb|ACP09492.1| conserved hypothetical protein [Vibrio cholerae O395] Length = 245 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 63/235 (26%), Positives = 92/235 (39%), Gaps = 41/235 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ---- 58 LY I E+F T+QGEG G AVF R GC + C +CDT Sbjct: 24 LYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSD 72 Query: 59 ---------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 T A + +++ + ++ V+TGGEP + L QA Sbjct: 73 QTSFSQILLKTNDAPTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCIYDLTELTQAFEA 132 Query: 110 RGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSP 160 G +ET+GT E W+ VSPK K+ E+K V + ++ Sbjct: 133 MGCRCQIETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDN 192 Query: 161 ENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 193 LDELLARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244 >gi|262275962|ref|ZP_06053771.1| queuosine Biosynthesis QueE Radical SAM [Grimontia hollisae CIP 101886] gi|262219770|gb|EEY71086.1| queuosine Biosynthesis QueE Radical SAM [Grimontia hollisae CIP 101886] Length = 220 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 60/238 (25%), Positives = 96/238 (40%), Gaps = 49/238 (20%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56 +Y++ EIF T+QGEG G +VF R GC + C +CDT Sbjct: 1 MYNVNEIFETIQGEGTFTGIPSVFIRLQGCPV-----------GCPWCDTRQTWDTLPLD 49 Query: 57 -----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 + R + + + ++ ++ V+TGGEP + +PL Sbjct: 50 QRDFGTIIAKNDESPLWARVSAEDILSHLQS-----RYTAKHIVITGGEPCMFDLMPLTS 104 Query: 106 ALNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQV 156 L+ G+ +ET+GT W+ VSPK K+ E+K V + Sbjct: 105 LLDAHGYRCQIETSGTYVVYATENTWVTVSPKINMRGKLPILKEALDRANEIKHPVGTES 164 Query: 157 NVSPEN----YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ + ++ + +LQP+ T L I C WRLSVQTHK++ I Sbjct: 165 DIEKLDELLKHVDLKGKEVALQPISQK--ARATALCIETCIAR-NWRLSVQTHKYLNI 219 >gi|282859352|ref|ZP_06268460.1| radical SAM domain protein [Prevotella bivia JCVIHMP010] gi|282587837|gb|EFB93034.1| radical SAM domain protein [Prevotella bivia JCVIHMP010] Length = 194 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 106/214 (49%), Gaps = 28/214 (13%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF ++QGEG +AG A+F RF+ CNL C FCDTDFV R Sbjct: 2 KINEIFYSIQGEGFYAGTPAIFVRFAQCNL-----------NCAFCDTDFV--------R 42 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + +++ E G + +LTGGEP LQV L L++ G I +ETNGT Sbjct: 43 FTEMTEEEIVAEVCRIG-NPATHVILTGGEPSLQVTASLCDKLHEAGKVIHIETNGTHAV 101 Query: 125 PQGIDWICVSPK----AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180 +GID+I SPK +L ++ ELK+VF N Y + + LQP D Sbjct: 102 AEGIDFITCSPKLEYCKHAELCVQRIDELKVVFTGKN-DMALYENIQAQHYFLQPCDVGN 160 Query: 181 LEENTNLA---ISYCFQNPKWRLSVQTHKFIGIR 211 EN + + YC NPKW +SVQ HK + IR Sbjct: 161 DAENGRIIAATVGYCKANPKWNISVQIHKVLAIR 194 >gi|323491404|ref|ZP_08096589.1| organic radical activating enzyme [Vibrio brasiliensis LMG 20546] gi|323314530|gb|EGA67609.1| organic radical activating enzyme [Vibrio brasiliensis LMG 20546] Length = 222 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 97/237 (40%), Gaps = 45/237 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y I E+F T+QGEG G +VF R C + C +CDT T Sbjct: 1 MYKINEMFQTIQGEGVFTGVPSVFVRLQECPV-----------GCAWCDTKQTW-DATPQ 48 Query: 63 GRYNVDQLA---------------DLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107 ++D++ D++ E G R+ V+TGGEP + PL A Sbjct: 49 DECSLDEILAKKEDSPAWCSVSAQDIVNEYQKQG-YTARHIVITGGEPCIYDLRPLTAAF 107 Query: 108 NKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNV 158 G + +ET+GT + W+ VSPK K+ E+K V Q ++ Sbjct: 108 EAIGCQCQIETSGTYQVDASENTWVTVSPKVAMKGKLPVIDSALLRANEIKHPVATQKDI 167 Query: 159 SPENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + +LQP+ T L I C + WRLS+QTHK++ I Sbjct: 168 DQLDELLTRAQVPQSTTIALQPISQK--PRATQLCIDTCVER-NWRLSIQTHKYLSI 221 >gi|261252909|ref|ZP_05945482.1| queuosine Biosynthesis QueE Radical SAM [Vibrio orientalis CIP 102891] gi|260936300|gb|EEX92289.1| queuosine Biosynthesis QueE Radical SAM [Vibrio orientalis CIP 102891] Length = 222 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 94/236 (39%), Gaps = 43/236 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y I E+F T+QGEG G +VF R C + C +CDT Sbjct: 1 MYKINEMFETIQGEGVFTGVPSVFVRLQECPV-----------GCAWCDTKQTWDATPTD 49 Query: 63 GR--------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 R + D++ E G ++ V+TGGEP + PL QA Sbjct: 50 ERPLNEILAKTEDSPTWCGVSAEDIVNEYKKQG-YTAKHIVITGGEPCIYDLRPLTQAFE 108 Query: 109 KRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159 + G + +ET+GT E W+ VSPK K+ E+K V Q ++ Sbjct: 109 ENGCQCQIETSGTFEVKATTKTWVTVSPKVAMKGKLPVIDSALLRANEIKHPVATQKDID 168 Query: 160 PENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 169 QLDELLERAKVSEQTTVALQPISQK--PRATQLCIDVCVAR-NWRLSIQTHKYLSI 221 >gi|90414517|ref|ZP_01222492.1| putative organic radical activating enzyme [Photobacterium profundum 3TCK] gi|90324425|gb|EAS40987.1| putative organic radical activating enzyme [Photobacterium profundum 3TCK] Length = 222 Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 64/239 (26%), Positives = 93/239 (38%), Gaps = 49/239 (20%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57 +Y I E+F T+QGEG G A+F R C + C +CDT Sbjct: 1 MYKINEVFETIQGEGTFTGVPAIFVRLQVCPV-----------GCSWCDTKQTWDAEPTD 49 Query: 58 ------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 + + L+++Q R+ V+TGGEP + +PL Sbjct: 50 YASLNDIMAKKGDSPLWTNIDAQGIVALLQDQG----YTARHVVITGGEPCIYDLIPLTA 105 Query: 106 ALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKL------ 151 AL GF +ET+GT E D W+ VSPK K+ E+K Sbjct: 106 ALETAGFNCQIETSGTSEILATEDTWVTVSPKINMKAKLPVLASALSRADEIKHPVGTSK 165 Query: 152 VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 Q++ +LQP+ T+L I C + WRLS+QTHK++ I Sbjct: 166 DIEQLDTLINGVTLKQNVTIALQPISQK--PRATDLCIETCIKR-NWRLSIQTHKYLAI 221 >gi|269964054|ref|ZP_06178359.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831195|gb|EEZ85349.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 226 Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 92/237 (38%), Gaps = 43/237 (18%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 LY + E+F T+QGEG G AVF R C + C +CDT + Sbjct: 4 TLYKLNEMFETIQGEGVFTGVPAVFVRLQVCPV-----------GCSWCDTKQTWYAEEE 52 Query: 62 GGR--------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107 G R + D++ E G ++ V+TGGEP + L A Sbjct: 53 GQRQIGDILVKTEDSPTWCFASAEDIVAEYKKQGFN-AKHIVITGGEPCIYDLRALTAAF 111 Query: 108 NKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL------VF 153 + G + +ET+GT E W+ VSPK K+ E+K Sbjct: 112 EEMGCQCQIETSGTSEVVTSESTWVTVSPKVAMKGKLPVLKSALERANEIKHPVGTQKDI 171 Query: 154 PQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 Q++ + + +LQP+ T L I C WRLSVQTHK++ I Sbjct: 172 DQLDSLLASADIAEKTVIALQPISQK--PRATQLCIDTCVAR-NWRLSVQTHKYLSI 225 >gi|28898413|ref|NP_798018.1| hypothetical protein VP1639 [Vibrio parahaemolyticus RIMD 2210633] gi|28806630|dbj|BAC59902.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] Length = 222 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 96/236 (40%), Gaps = 43/236 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y + E+F T+QGEG G AVF R C + C +CDT K Sbjct: 1 MYKLNEMFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWDAEEKD 49 Query: 63 GR--------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 R + D++E+ G ++ V+TGGEP + PL +A Sbjct: 50 QRPIGDILVKTEDSPTWCTASAEDIVEQYKQQGFN-AKHIVITGGEPCIYDLRPLSKAFE 108 Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159 G + +ET+GT E W+ VSPK K+ E+K V Q ++ Sbjct: 109 DMGCQCQIETSGTSEVVTSEKTWVTVSPKVAMKGKLPVLRSALERANEIKHPVGTQKDID 168 Query: 160 PENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 169 HLDELLANADIKVETVIALQPISQK--PRATQLCIETCIAR-NWRLSIQTHKYLSI 221 >gi|238791241|ref|ZP_04634880.1| hypothetical protein yinte0001_29930 [Yersinia intermedia ATCC 29909] gi|238729374|gb|EEQ20889.1| hypothetical protein yinte0001_29930 [Yersinia intermedia ATCC 29909] Length = 216 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 89/233 (38%), Gaps = 49/233 (21%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----------- 57 +F TLQGEG G A+F R GC + C +CDT Sbjct: 1 MFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKEADREVDMQR 49 Query: 58 ------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111 + G + QL D+ +Q R+ V+TGGEP + PL L + G Sbjct: 50 IMVKTAESDAWGEASAQQLLDIFSQQG----YTARHVVITGGEPAIYDLFPLTSLLEQAG 105 Query: 112 FEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL------VFPQVN 157 + +ET+GT + W+ VSPK ++ E+K + Sbjct: 106 YSCQIETSGTHDVRCSATTWVTVSPKVNMRGGLKVLPQALQRADEIKHPVGRMRDIEALE 165 Query: 158 VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 V +LQP+ ++ T L I C WRLS+QTHK++ I Sbjct: 166 VLLATLDDDKKRIIALQPISQK--DDATKLCIETCIAK-NWRLSMQTHKYLNI 215 >gi|312884429|ref|ZP_07744133.1| hypothetical protein VIBC2010_14679 [Vibrio caribbenthicus ATCC BAA-2122] gi|309367741|gb|EFP95289.1| hypothetical protein VIBC2010_14679 [Vibrio caribbenthicus ATCC BAA-2122] Length = 238 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 96/237 (40%), Gaps = 43/237 (18%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 KLY + E+F T+QGEG G +VF R C + C +CDT K Sbjct: 16 KLYKVNEMFETIQGEGVFTGVPSVFVRLQECPV-----------GCAWCDTKQTWDASPK 64 Query: 62 GGR--------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107 R + D++ E G R+ V+TGGEP + +PL +A Sbjct: 65 DERTLKEILSKTTDSPTWCRASANDVVSEYLRQG-YTARHIVITGGEPCIYDLIPLTEAF 123 Query: 108 NKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNV 158 + +ET+GT E W+ VSPK K+ ELK V Q ++ Sbjct: 124 EAINCKCQIETSGTSEVITSPNTWVTVSPKIAMKGKLPVLPSALIRANELKHPVATQKDI 183 Query: 159 SPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + +LQP+ T L I C + WRLS+QTHK++ I Sbjct: 184 DRLDDLLSGVSLSEDTEIALQPISQK--PRATELCIEVCIKR-NWRLSIQTHKYLSI 237 >gi|54309500|ref|YP_130520.1| putative organic radical activating enzyme [Photobacterium profundum SS9] gi|46913936|emb|CAG20718.1| putative organic radical activating enzymes [Photobacterium profundum SS9] Length = 222 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 65/239 (27%), Positives = 94/239 (39%), Gaps = 49/239 (20%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57 +Y I E+F T+QGEG G A+F R C + C +CDT Sbjct: 1 MYKINEVFETIQGEGTFTGVPAIFVRLQVCPV-----------GCSWCDTKQTWDAEPTD 49 Query: 58 ------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 + + L+++Q R+ V+TGGEP + VPL Sbjct: 50 YASLNDIMAKKGDSPLWTNIDAQGIVTLLQDQG----YTARHVVITGGEPCIYDLVPLTA 105 Query: 106 ALNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL------ 151 AL GF +ET+GT E W+ VSPK K+ E+K Sbjct: 106 ALETAGFNCQIETSGTSEILATENTWVTVSPKINMKAKLPVLASALSRADEIKHPVGTSK 165 Query: 152 VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 Q++ + I +LQP+ T+L I C + WRLS+QTHK++ I Sbjct: 166 DIKQLDALIDGVILKQNVTIALQPISQK--PRATDLCIETCIKR-NWRLSIQTHKYLAI 221 >gi|59713678|ref|YP_206453.1| hypothetical protein VF_A0495 [Vibrio fischeri ES114] gi|59481926|gb|AAW87565.1| conserved protein [Vibrio fischeri ES114] Length = 226 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 62/240 (25%), Positives = 94/240 (39%), Gaps = 49/240 (20%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57 L+ I E+F T+QGEG G ++F R GC + C +CDT Sbjct: 4 PLFKINELFETIQGEGTFTGVPSIFLRLQGCPV-----------GCSWCDTKQTWDVELS 52 Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104 + Q+ +++E Q ++ V+TGGEP + L Sbjct: 53 DKTDLQTILAKTEDTPSWTELSSTQIIEMLENQG----YTAKHMVITGGEPCMYDLTSLT 108 Query: 105 QALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKL----- 151 Q L + G+ +ET+GT D W+ VSPK K+ E+K Sbjct: 109 QELEQHGYRCQIETSGTYPILASDDTWVTVSPKINMKGKLPVLPVALSRANEIKHPVGTT 168 Query: 152 -VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 Q++ E + +LQP+ T L I C + WRLS+QTHK++ I Sbjct: 169 KDIEQLDALLEGVELLEDVTIALQPISQK--PRATELCIETCIKR-NWRLSIQTHKYLAI 225 >gi|197286098|ref|YP_002151970.1| hypothetical protein PMI2252 [Proteus mirabilis HI4320] gi|194683585|emb|CAR44467.1| conserved hypothetical protein [Proteus mirabilis HI4320] Length = 223 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 63/235 (26%), Positives = 97/235 (41%), Gaps = 43/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT--- 60 Y I E+F TLQGEG G A+F R GC + C +CDT + Sbjct: 3 YPINEVFQTLQGEGVFTGVPALFVRLQGCPV-----------GCSWCDTKHTWEKEESKK 51 Query: 61 -----------KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 + + + + D++ + ++ V+TGGEP L PL + L K Sbjct: 52 VPLGDIPIKTQESDTWGIATVEDIL-SLFRQQRYSAKHVVITGGEPCLYDLRPLTEGLEK 110 Query: 110 RGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQVNVSP 160 GF+ +ET+GT + W+ +SPK G I E+K V + ++ Sbjct: 111 AGFDCQIETSGTHDILCSEATWVTLSPKVGMRGGLSVLSSAINRANEIKHPVAREKDIEA 170 Query: 161 ENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + +LQP+ E T L I C + WR S+QTHK++ I Sbjct: 171 LDDLLRLRTQQPMAIVALQPISCK--ESATALCIKTCIER-NWRFSMQTHKYLNI 222 >gi|221135470|ref|ZP_03561773.1| organic radical activating protein [Glaciecola sp. HTCC2999] Length = 227 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 97/238 (40%), Gaps = 47/238 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y I EIF ++QGEG + G ++F R GC + C +CDT Sbjct: 7 YPINEIFESIQGEGSYTGVPSIFIRLQGCPV-----------GCPWCDTQHTWKVDTDDQ 55 Query: 57 -------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 + + + + L+ E I G ++ V+TGGEP + VPL + L Sbjct: 56 IPVVQLREKSADAPTHALMNVTALLHEYEIRG-YLAKHVVITGGEPAMHDLVPLTEVLLS 114 Query: 110 RGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKLVFPQVNVSPE 161 +GF + +ET+GT D ++ VSPK K E+K E Sbjct: 115 KGFSVQIETSGTFALRCADDVYVTVSPKIDMPGKYPILPEVMARANEIKHAVAMQKHVDE 174 Query: 162 NYIGFDFER--------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + ER LQP+ T LA+ C + WRLS+QTHKFIGI Sbjct: 175 --LKLLLERAPIQTNTLIYLQPISQ--QARATQLAVETCIK-ENWRLSLQTHKFIGIE 227 >gi|127512989|ref|YP_001094186.1| radical SAM domain-containing protein [Shewanella loihica PV-4] gi|126638284|gb|ABO23927.1| Radical SAM domain protein [Shewanella loihica PV-4] Length = 222 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 63/238 (26%), Positives = 97/238 (40%), Gaps = 45/238 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56 MK Y + E+F T+QGEG + G A+F R GC + C +CDT Sbjct: 1 MK-YPVNEVFETIQGEGVYTGVPAIFVRLQGCPV-----------GCSWCDTKHTWETLA 48 Query: 57 -----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 + G G +D A + + ++ V+TGGEP + + L Q Sbjct: 49 ENRVSSEQVIQVDGAIGRWAELD--ARELLMHFKVQGFSAKHVVITGGEPCIYDLIALTQ 106 Query: 106 ALNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQVN 157 A G + +ET+GT + W+ VSPK + ++ E+K + + Sbjct: 107 AFADAGMQCQIETSGTFDVLVDPRAWVTVSPKINMKGGYKVLEQALERADEIKHPVAKAS 166 Query: 158 VSPENY-----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E I + LQP+ T LA+ C + WRLS+QTHK++ I Sbjct: 167 HIEELDELLKGIDTLGKTICLQPISQK--PRATELAMKVCIER-NWRLSIQTHKYLNI 221 >gi|260876575|ref|ZP_05888930.1| organic radical activating enzyme [Vibrio parahaemolyticus AN-5034] gi|260895066|ref|ZP_05903562.1| organic radical activating enzyme [Vibrio parahaemolyticus Peru-466] gi|308125822|ref|ZP_05777715.2| organic radical activating enzyme [Vibrio parahaemolyticus K5030] gi|308126346|ref|ZP_05909319.2| organic radical activating enzyme [Vibrio parahaemolyticus AQ4037] gi|308085913|gb|EFO35608.1| organic radical activating enzyme [Vibrio parahaemolyticus Peru-466] gi|308093608|gb|EFO43303.1| organic radical activating enzyme [Vibrio parahaemolyticus AN-5034] gi|308110779|gb|EFO48319.1| organic radical activating enzyme [Vibrio parahaemolyticus AQ4037] gi|308111580|gb|EFO49120.1| organic radical activating enzyme [Vibrio parahaemolyticus K5030] Length = 226 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 96/236 (40%), Gaps = 43/236 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 LY + E+F T+QGEG G AVF R C + C +CDT K Sbjct: 5 LYKLNEMFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWDAEEKD 53 Query: 63 GR--------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 R + D++E+ G ++ V+TGGEP + PL +A Sbjct: 54 QRPIGDILVKTEDSPTWCTASAEDIVEQYKQQGFN-AKHIVITGGEPCIYDLRPLSKAFE 112 Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159 G + +ET+GT E W+ VSPK K+ E+K V Q ++ Sbjct: 113 DMGCQCQIETSGTSEVVTSEKTWVTVSPKVAMKGKLPVLRSALERANEIKHPVGTQKDID 172 Query: 160 PENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 173 HLDELLANADIKVETVIALQPISQK--PRATQLCIETCIAR-NWRLSIQTHKYLSI 225 >gi|153836184|ref|ZP_01988851.1| organic radical activating enzyme [Vibrio parahaemolyticus AQ3810] gi|149750459|gb|EDM61204.1| organic radical activating enzyme [Vibrio parahaemolyticus AQ3810] Length = 226 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 93/236 (39%), Gaps = 43/236 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 LY + E+F T+QGEG G AVF R C + C +CDT K Sbjct: 5 LYKLNEMFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWDAEEKD 53 Query: 63 GR--------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 R + D++E+ G ++ V+TGGEP + PL +A Sbjct: 54 QRPIGDILVKTEDSPTWCTASAEDIVEQYKQQGFN-AKHIVITGGEPCIYDLRPLSKAFE 112 Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKLVF---PQVN 157 G + +ET+GT E W+ VSPK K+ E+K ++ Sbjct: 113 DMGCQCQIETSGTSEVVTSEKTWVTVSPKVAMKGKLPVLRSALERANEIKHPVGTQKDID 172 Query: 158 VSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E D + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 173 HLDELLANADIKTETVIALQPISQK--PRATQLCIETCIAR-NWRLSIQTHKYLSI 225 >gi|163752023|ref|ZP_02159232.1| radical activating enzyme [Shewanella benthica KT99] gi|161328075|gb|EDP99244.1| radical activating enzyme [Shewanella benthica KT99] Length = 222 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 99/237 (41%), Gaps = 43/237 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK Y + E+F T+QGEG G A+F R GC + C +CDT Sbjct: 1 MK-YPVNEVFETIQGEGVFTGVAAIFVRLQGCPV-----------GCSWCDTKHTWDVLE 48 Query: 61 KG--------------GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 K GR++ +LI +I ++ V+TGGEP + L Sbjct: 49 KNRVAPELVIQVDGVIGRWSELTAEELIN-FFIRKGFNAKHVVITGGEPCIHDLTELTSQ 107 Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCD-------LKIKGGQELKLVFP---Q 155 LN++G+ +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LNRQGYGTQIETSGTFEVTCSDKTWVTVSPKVNMKAGMTVLTQALERADEIKHPVARSKH 167 Query: 156 VNVSPENYIGFDFE--RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ E G + E LQP+ T LA+ C + WRLS+QTHK++ I Sbjct: 168 IDDLDELLEGIEVEGKIICLQPISQK--PRATELAMKICIER-NWRLSIQTHKYLNI 221 >gi|238897449|ref|YP_002923126.1| hypothetical protein HDEF_0210 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465204|gb|ACQ66978.1| conserved hypothetical protein, Radical_SAM domain protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 223 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 91/237 (38%), Gaps = 41/237 (17%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 LY I EIF TLQGEG G A+F R GC + C +CDT + + Sbjct: 1 MLYPINEIFQTLQGEGHFMGTPAIFIRLQGCPV-----------GCSWCDTKHTWEKKNE 49 Query: 62 -------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 + + + + V+TGGEP L PL Q L Sbjct: 50 QQVDLFSILQKKTANDFWSHSGEQNLLAVIRAQGYQASHVVITGGEPCLYDLTPLTQLLE 109 Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDL-------KIKGGQELKLVFPQ----- 155 + G+ +ET+GT W+ VSPK ++ ELK V + Sbjct: 110 QEGYFCQIETSGTHLVHCTPSCWVTVSPKINMRGGFKIQHQALERADELKHVVARKSDIE 169 Query: 156 -VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 ++ N SLQP+ + T L I C + WRLSVQ HK++GI Sbjct: 170 TLDALIGNLKDRKKRIISLQPVSQK--KSATQLCIDTCIER-NWRLSVQMHKYLGIE 223 >gi|90408082|ref|ZP_01216253.1| putative organic radical activating enzyme [Psychromonas sp. CNPT3] gi|90310839|gb|EAS38953.1| putative organic radical activating enzyme [Psychromonas sp. CNPT3] Length = 225 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 91/234 (38%), Gaps = 41/234 (17%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + EIF T+QGEG H G A+F R GC++ C +CDT Sbjct: 5 YKVNEIFQTIQGEGVHTGCAAIFIRLQGCDV-----------GCAWCDTKHTWSANENDK 53 Query: 64 ---------RYNVDQLADLIEEQWITG----EKEGRYCVLTGGEPLLQVDVPLIQALNKR 110 + Q AD+ E + E + ++TGGEP + PL L+ Sbjct: 54 VPLNLVTDLSNSSAQWADVSAEHILAEIKNLEYTAKLVIITGGEPCIFDLRPLTALLHAH 113 Query: 111 GFEIAVETNGTIEPP-QGIDWICVSPKAGCDLK-------IKGGQELKL------VFPQV 156 GF+ +ET+GT W+ VSPK K ++ E+K Q+ Sbjct: 114 GFQTQIETSGTYPILVDAKSWVTVSPKVNMRAKKEVLLSALQRADEIKHPVGTQKDIEQL 173 Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + LQP+ T L + C WRLSVQ HK++ I Sbjct: 174 DALLARLGDTHNKTICLQPISQK--ANATALCMRTCIAR-NWRLSVQLHKYLDI 224 >gi|227356608|ref|ZP_03840995.1| radical SAM domain protein [Proteus mirabilis ATCC 29906] gi|227163364|gb|EEI48291.1| radical SAM domain protein [Proteus mirabilis ATCC 29906] Length = 250 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 63/235 (26%), Positives = 97/235 (41%), Gaps = 43/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT--- 60 Y I E+F TLQGEG G A+F R GC + C +CDT + Sbjct: 30 YPINEVFQTLQGEGVFTGVPALFVRLQGCPV-----------GCSWCDTKHTWEKEESKK 78 Query: 61 -----------KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 + + + + D++ + ++ V+TGGEP L PL + L K Sbjct: 79 VPLGDIPIKTQESDTWGIATVEDIL-SLFRQQRYSAKHVVITGGEPCLYDLRPLTEGLEK 137 Query: 110 RGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQVNVSP 160 GF+ +ET+GT + W+ +SPK G I E+K V + ++ Sbjct: 138 AGFDCQIETSGTHDILCSEATWVTLSPKVGMRGGLNVLSSAINRANEIKHPVAREKDIEA 197 Query: 161 ENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + +LQP+ E T L I C + WR S+QTHK++ I Sbjct: 198 LDDLLRLRTQQPMAIVALQPISCK--ESATALCIKTCIER-NWRFSMQTHKYLNI 249 >gi|119469471|ref|ZP_01612375.1| queC protein [Alteromonadales bacterium TW-7] gi|119447006|gb|EAW28276.1| queC protein [Alteromonadales bacterium TW-7] Length = 221 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 93/234 (39%), Gaps = 40/234 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57 +Y I E+F T+QGE G ++F R GC + C +CDT Sbjct: 1 MYKINEVFETIQGEASFTGTPSIFLRLQGCPV-----------GCSWCDTKQTWDVDNVY 49 Query: 58 ----QGTKGGRYNVDQLADL----IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 T + + D AD + E + + ++ V+TGGEP + + + L+ Sbjct: 50 KVSLDETVEKKADSDHWADASAEQVLELFKSRGYTAKHVVITGGEPCMYDLNQVCKLLHD 109 Query: 110 RGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQVNVSPE 161 GF +ET+GT E W+ VSPK +K E+K E Sbjct: 110 NGFTTQIETSGTFEILAPEQTWVTVSPKINMRGGYEVLTSAMKRANEIKHPVAMQKHVEE 169 Query: 162 NYIGF-----DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 F + + LQP+ T LAI C WRLS+Q HK++GI Sbjct: 170 LEELFAKTGVNPKLVYLQPISQKVS--ATKLAIDTCIAK-NWRLSIQVHKYLGI 220 >gi|268591373|ref|ZP_06125594.1| radical SAM domain protein [Providencia rettgeri DSM 1131] gi|291313351|gb|EFE53804.1| radical SAM domain protein [Providencia rettgeri DSM 1131] Length = 223 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 93/239 (38%), Gaps = 44/239 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK Y I EIF T+QGEG G AVF R GC + C +CDT + Sbjct: 1 MK-YPINEIFQTIQGEGVFTGVPAVFIRLQGCPV-----------GCSWCDTKQTWEKEQ 48 Query: 61 KGG---------RYNVDQLA----DLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107 + D A + + + ++ V+TGGEP + PL L Sbjct: 49 DKESTLGDIALKTIDSDAWAMADGEALVQLMKEKHFSAQHIVITGGEPCIYDLQPLTGIL 108 Query: 108 NKRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDL-------KIKGGQELKLVFPQVNVS 159 + G++ +ET+GT W+ VSPK G + E+K + Sbjct: 109 EQHGYQCQIETSGTYPIQCTDNTWVTVSPKVGMKGGLQVISQAVNRANEIKHPVAREK-D 167 Query: 160 PENYIGFDFER-------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 E R +LQP+ T L I C Q WRLS+QTHK++ I+ Sbjct: 168 IEALEKILALRTVETPPVVALQPISQK--AAATKLCIETCIQR-NWRLSIQTHKYLDIQ 223 >gi|328468975|gb|EGF39935.1| hypothetical protein VP10329_15155 [Vibrio parahaemolyticus 10329] Length = 226 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 93/236 (39%), Gaps = 43/236 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 LY + E+F T+QGEG G AVF R C + C +CDT K Sbjct: 5 LYKLNEMFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWDAEEKD 53 Query: 63 GR--------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 R + D++E+ G ++ V+TGGEP + PL +A Sbjct: 54 QRPIGDILVKTEDSPTWCTASAEDIVEQYKQQGFN-AKHIVITGGEPCIYDLRPLSKAFE 112 Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKLVF---PQVN 157 G + +ET+GT E W+ VSPK K+ E+K ++ Sbjct: 113 DMGCQCQIETSGTSEVVTSEKTWVTVSPKVAMKGKLPVLKSALERANEIKHPVGTQKDID 172 Query: 158 VSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E D + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 173 HLDELLANADIKTETVIALQPISQK--PRATQLCIETCISR-NWRLSIQTHKYLSI 225 >gi|88859840|ref|ZP_01134479.1| queC protein [Pseudoalteromonas tunicata D2] gi|88817834|gb|EAR27650.1| queC protein [Pseudoalteromonas tunicata D2] Length = 221 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 92/238 (38%), Gaps = 48/238 (20%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57 +Y I EIF T+QGE G ++F R GC + C +CDT Sbjct: 1 MYKINEIFETIQGEASFTGMPSIFVRLQGCPV-----------GCAWCDTKQTWETSDTY 49 Query: 58 ------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 V QL L E+ + ++ V+TGGEP + VPL + Sbjct: 50 KVDLQKTVEKKADSELWADVTVAQLLALFVEKG----YQAKHIVITGGEPCMYDLVPLCE 105 Query: 106 ALNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQVN 157 L+ G+ VET+GT E W+ VSPK ++ E+K Sbjct: 106 GLHAAGYGTQVETSGTFEIKVPAETWVTVSPKINMRGGYAVLKSAMQRANEIKHPIAMQR 165 Query: 158 VSPE-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E G + LQP+ + T LAI C WRLSVQ HK++GI Sbjct: 166 HVDELEQLMAECGVTPKLIYLQPISQK--AKATQLAIEVCKAK-NWRLSVQVHKYLGI 220 >gi|109899267|ref|YP_662522.1| radical SAM family protein [Pseudoalteromonas atlantica T6c] gi|109701548|gb|ABG41468.1| Radical SAM [Pseudoalteromonas atlantica T6c] Length = 248 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 67/244 (27%), Positives = 96/244 (39%), Gaps = 51/244 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56 + Y I E+F +LQGEG H G ++F R GC + C +CDT Sbjct: 23 LNTYKINEVFESLQGEGAHTGVPSIFIRLQGCPV-----------GCPWCDTKHTWEIDQ 71 Query: 57 -------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103 + + +QL L ++ E +LTGGEP + L Sbjct: 72 NLKVAAPVVMAQNEDTAQWFEHTPEQLLALFKQH----EYTASNIILTGGEPCMYDLTDL 127 Query: 104 IQALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLK-------IKGGQELKL-VFP 154 L + GF + +ET+GT E D W+ VSPK K + E+K V Sbjct: 128 SSVLIENGFSVQIETSGTYEILTHPDTWVTVSPKVNMPGKRDVLKSAMHRANEIKHPVAM 187 Query: 155 QVNVSPENYI-------GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207 + ++ ++ LQP+ + T L I C WRLS+QTHKF Sbjct: 188 EKHIEELEHVLTLLVGSDNPKPLIYLQPISQ--QKRATELCIKTCIAR-NWRLSLQTHKF 244 Query: 208 IGIR 211 IGI Sbjct: 245 IGIE 248 >gi|284009093|emb|CBA76077.1| conserved hypothetical protein [Arsenophonus nasoniae] Length = 224 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 93/239 (38%), Gaps = 50/239 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I +IF T+QGEG G A+F R GC + C +CDT Sbjct: 3 YPINQIFQTIQGEGYFTGVAAIFVRLQGCPV-----------GCSWCDTKHTWAKNKQQQ 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + + +Q+ DL E+ R+ V+TGGEP L L Sbjct: 52 RPLSIILAKKSDNEEWATCSSEQIIDLFEQ----NHYTARHIVITGGEPCLYDLTELTTN 107 Query: 107 LNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQVN 157 L K+G++ +ET+GT W+ VSPK + E+K V Q + Sbjct: 108 LEKKGYQCQIETSGTHNIYCSEKTWVTVSPKVAMRGGYKILPAALNRANEIKHPVGRQRD 167 Query: 158 VSPENYI------GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + Y+ LQP+ TNL I C + WRLSVQ HK++ I Sbjct: 168 IDALEYLINQLAPNHPAPHICLQPISQ--NANATNLCIETCIKR-NWRLSVQMHKYLDI 223 >gi|332173072|gb|AEE22326.1| Radical SAM domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 248 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 68/244 (27%), Positives = 97/244 (39%), Gaps = 51/244 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56 + Y I E+F +LQGEG H G ++F R GC + C +CDT Sbjct: 23 LNTYKINEVFESLQGEGAHTGVPSIFIRLQGCPV-----------GCPWCDTKHTWEIDL 71 Query: 57 -------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103 + + + QL DL + T +LTGGEP + L Sbjct: 72 NLKVEASVVMAQNVDTEQWFEHTPKQLLDLFTQHGYTASN----IILTGGEPCMYDLTDL 127 Query: 104 IQALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLK-------IKGGQELKL-VFP 154 L + G+ + +ET+GT E D W+ VSPK K + E+K V Sbjct: 128 SSVLIENGYSVQIETSGTYEIMAHPDTWVTVSPKVNMPGKRDVLKSALLRANEIKHPVAM 187 Query: 155 QVNVSPENYIGFDFE-------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207 + ++ + + E LQP+ + T L I C WRLS+QTHKF Sbjct: 188 EKHIEELDQVLTLLEGSNTTKPLIYLQPISQ--QKRATELCIKTCIAR-NWRLSLQTHKF 244 Query: 208 IGIR 211 IGI Sbjct: 245 IGIE 248 >gi|197337552|ref|YP_002158091.1| queuosine biosynthesis protein QueE [Vibrio fischeri MJ11] gi|197314804|gb|ACH64253.1| queuosine biosynthesis protein QueE [Vibrio fischeri MJ11] Length = 226 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 61/240 (25%), Positives = 93/240 (38%), Gaps = 49/240 (20%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57 L+ I E+F T+QGEG G ++F R GC + C +CDT Sbjct: 4 PLFKINELFETIQGEGTFTGVPSIFLRLQGCPV-----------GCSWCDTKQTWDVELS 52 Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104 + Q+ +++E Q ++ V+TGGEP + L Sbjct: 53 DKTDLQTILAKTEDTPSWTELSSTQIIEMLENQG----YTAKHMVITGGEPCMYDLTSLT 108 Query: 105 QALNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL----- 151 Q L + G+ +ET+GT W+ VSPK K+ E+K Sbjct: 109 QELEQHGYRCQIETSGTYPILASENTWVTVSPKINMKGKLPVLPVALSRANEIKHPVGTT 168 Query: 152 -VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 Q++ E + +LQP+ T L I C + WRLS+QTHK++ I Sbjct: 169 KDIEQLDALLEGVELLEDVTIALQPISQK--PRATELCIETCIKR-NWRLSIQTHKYLAI 225 >gi|170726897|ref|YP_001760923.1| radical activating enzyme [Shewanella woodyi ATCC 51908] gi|169812244|gb|ACA86828.1| radical activating enzyme [Shewanella woodyi ATCC 51908] Length = 222 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 100/238 (42%), Gaps = 45/238 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56 MK Y + E+F T+QGEG + G A+F R GC + C +CDT Sbjct: 1 MK-YPVNEVFETIQGEGFYTGVPAIFVRLQGCPV-----------GCSWCDTKHTWELLD 48 Query: 57 -----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 + GT G R++ ++LI E + V+TGGEP L + + Sbjct: 49 VNKVQPEMVIQVDGTIG-RWSELTTSELI-SFLKQKEFTASHVVITGGEPCLHDLTAMTE 106 Query: 106 ALNKRGFEIAVETNGTIEPP-QGIDWICVSPK-------AGCDLKIKGGQELKL-VFPQV 156 N G+ +ET+GT E W+ VSPK A +K E+K V Sbjct: 107 EFNDAGYSTQIETSGTFEVHCSEKTWVTVSPKLKMKAGLAVLPQALKRANEIKHPVATAS 166 Query: 157 NVSPENY----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ + + + LQP+ T LA+ C + WRLS+QTHK++ I Sbjct: 167 HIDDLDELLNGVDLKGKTICLQPISQKT--RATELAMRVCIER-NWRLSIQTHKYLDI 221 >gi|119774960|ref|YP_927700.1| radical activating enzyme [Shewanella amazonensis SB2B] gi|119767460|gb|ABM00031.1| radical activating enzyme [Shewanella amazonensis SB2B] Length = 233 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 65/238 (27%), Positives = 92/238 (38%), Gaps = 44/238 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56 M Y I E+F T+QGEG H G A+F R GC + C +CDT Sbjct: 11 MTEYPINEVFETIQGEGSHTGLPAIFVRLQGCPV-----------ACPWCDTAQTWDVLE 59 Query: 57 -----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 + G+ G R+ + + L+ G + V+TGGEP + L Q Sbjct: 60 QSKVAPADVIQVDGSIG-RWAMHSASSLVAAFNQKG-FTAKLVVITGGEPCMHDLTDLTQ 117 Query: 106 ALNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCDLKIK-------GGQELKLVF---P 154 GF +ET+GT E ++ VSPK E+K Sbjct: 118 GFEAEGFHCQIETSGTFEVHCSDRTYVTVSPKINMKGGYPVLKQALVRANEIKHPVATDA 177 Query: 155 QVNVSPENYIGFDF--ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ G D + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 178 HIDELDALLEGIDTSGKTICLQPISQK--PRATELAMKTCIAR-NWRLSIQTHKYLNI 232 >gi|327405865|ref|YP_004346703.1| Radical SAM domain-containing protein [Fluviicola taffensis DSM 16823] gi|327321373|gb|AEA45865.1| Radical SAM domain protein [Fluviicola taffensis DSM 16823] Length = 204 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 64/214 (29%), Positives = 94/214 (43%), Gaps = 26/214 (12%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + E F T+QGEG + G A F R GC++ C +CD Sbjct: 9 YPVMEHFYTIQGEGKYTGTSAYFIRLGGCDV-----------GCVWCDVKESW-DADIHP 56 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 + VD+L ++ + G V+TGGEP + L+ AL+ G +A+ET+GT Sbjct: 57 KMTVDELITVVAQ------YPGELVVITGGEPAMYDLSVLVDALHSIGKYVAIETSGTSP 110 Query: 124 PPQGIDWICVSPKA---GCDLKIKGGQELKLV-FPQVNVSPENYIGF---DFERFSLQPM 176 +DW SPK D ELK+V F Q ++ D LQP Sbjct: 111 LVGAVDWYTFSPKKFKSPVDEAYNKASELKIVIFHQSDLKWAEEHSLKVNDACVLYLQP- 169 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E+ I Y +PKW++S+QTHK++ I Sbjct: 170 EWSKREQLLPTIIEYVKNHPKWKISLQTHKYLEI 203 >gi|269102881|ref|ZP_06155578.1| queuosine Biosynthesis QueE Radical SAM [Photobacterium damselae subsp. damselae CIP 102761] gi|268162779|gb|EEZ41275.1| queuosine Biosynthesis QueE Radical SAM [Photobacterium damselae subsp. damselae CIP 102761] Length = 222 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 93/239 (38%), Gaps = 49/239 (20%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57 +Y + E+F T+QGEG G A+F R C + C +CDT Sbjct: 1 MYKLNEVFETIQGEGVFTGVPAIFVRLQICPV-----------GCSWCDTKQTWSAEPQD 49 Query: 58 ------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 + + L+++Q ++ V+TGGEP + PL Q Sbjct: 50 FTTLDRIMAKTGDSPLWTEIDAQGIVSLLQDQG----YTAKHVVITGGEPCIYDLRPLTQ 105 Query: 106 ALNKRGFEIAVETNGTIEPPQ-GIDWICVSPKAGCDLKIK-------GGQELKLVF---P 154 AL G++ +ET+GT E W+ VSPK K+ E+K Sbjct: 106 ALEASGYQCQIETSGTSEVQATEATWVTVSPKINMKGKLPVLEKALSRANEIKHPVGTQK 165 Query: 155 QVNVSPENYIGFDFE---RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ E G +LQP+ T L I C + WRLS+QTHK++ I Sbjct: 166 DLDQLDELLNGVALRSDVTIALQPISQK--PRATELCIETCIKR-NWRLSIQTHKYLAI 221 >gi|332036527|gb|EGI72995.1| queuosine biosynthesis QueE radical SAM [Pseudoalteromonas haloplanktis ANT/505] Length = 221 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 93/234 (39%), Gaps = 40/234 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57 +Y I E+F T+QGE G ++F R GC + C +CDT Sbjct: 1 MYKINEVFETIQGEASFTGTPSIFLRLQGCPV-----------GCSWCDTKQTWDVDNVY 49 Query: 58 ----QGTKGGRYNVDQLADLIEEQWIT----GEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 T + + D A+ EQ + ++ V+TGGEP + P+ L++ Sbjct: 50 KVSLDETVEKKADSDHWANASAEQILALFQSRGYTAKHVVITGGEPCMFDLNPVCNLLHE 109 Query: 110 RGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQVNVSPE 161 GF +ET+GT E W+ VSPK +K E+K E Sbjct: 110 HGFSTQIETSGTFEILAPEQTWVTVSPKINMRGGYEVLTSTMKRANEIKHPVAMQKHVEE 169 Query: 162 NYIGF-----DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 F + + LQP+ T LAI C WRLS+Q HK++GI Sbjct: 170 LEELFAKTGVNPKLVYLQPISQKVS--ATKLAIDTCIAK-NWRLSIQVHKYLGI 220 >gi|15641377|ref|NP_231009.1| hypothetical protein VC1365 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153819362|ref|ZP_01972029.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153821325|ref|ZP_01973992.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227081536|ref|YP_002810087.1| hypothetical protein VCM66_1320 [Vibrio cholerae M66-2] gi|229505054|ref|ZP_04394564.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae BX 330286] gi|229511276|ref|ZP_04400755.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae B33] gi|229518394|ref|ZP_04407838.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae RC9] gi|229608058|ref|YP_002878706.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae MJ-1236] gi|254848487|ref|ZP_05237837.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|298498551|ref|ZP_07008358.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9655859|gb|AAF94523.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126510107|gb|EAZ72701.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126521143|gb|EAZ78366.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227009424|gb|ACP05636.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|229345109|gb|EEO10083.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae RC9] gi|229351241|gb|EEO16182.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae B33] gi|229357277|gb|EEO22194.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae BX 330286] gi|229370713|gb|ACQ61136.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae MJ-1236] gi|254844192|gb|EET22606.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|297542884|gb|EFH78934.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 245 Score = 220 bits (562), Expect = 8e-56, Method: Composition-based stats. Identities = 62/235 (26%), Positives = 91/235 (38%), Gaps = 41/235 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ---- 58 LY I E+F +QGEG G AVF R GC + C +CDT Sbjct: 24 LYRINEMFEIIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSD 72 Query: 59 ---------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 T A + +++ + ++ V+TGGEP + L QA Sbjct: 73 QTSFSQILLKTNDAPTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCIYDLTELTQAFEA 132 Query: 110 RGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSP 160 G +ET+GT E W+ VSPK K+ E+K V + ++ Sbjct: 133 MGCRCQIETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDN 192 Query: 161 ENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 193 LDELLARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244 >gi|260061953|ref|YP_003195033.1| hypothetical protein RB2501_10187 [Robiginitalea biformata HTCC2501] gi|88783515|gb|EAR14686.1| hypothetical protein RB2501_10187 [Robiginitalea biformata HTCC2501] Length = 210 Score = 220 bits (562), Expect = 8e-56, Method: Composition-based stats. Identities = 60/215 (27%), Positives = 91/215 (42%), Gaps = 27/215 (12%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + E F T+QGEG H G A F R GC++ C +CD + Sbjct: 15 MLPLMEAFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCDVK----ESWNA 59 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + ++ + + V+TGGEPL+ PL L RG +I +ET+G Sbjct: 60 DLHPPTAVDTIVRDAAAASD----TIVVTGGEPLMWDMAPLTSRLKSRGMKIHIETSGAY 115 Query: 123 EPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVN----VSPENYIGFDFERFSLQP 175 DWIC+SPK + ELK++ + + LQP Sbjct: 116 PLTGTWDWICLSPKKNKAPVGDIHQRAHELKVIVYNRHDLKFAEEHAELTSPDCLLYLQP 175 Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E T L + Y NP+WR+S+QTHK++ I Sbjct: 176 -EWSVRERVTPLIVEYVMANPRWRVSLQTHKYLNI 209 >gi|149191047|ref|ZP_01869307.1| organic radical activating enzyme [Vibrio shilonii AK1] gi|148835075|gb|EDL52052.1| organic radical activating enzyme [Vibrio shilonii AK1] Length = 226 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 96/237 (40%), Gaps = 43/237 (18%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I E+F T+QGEG G AVF R CN+ C +CDT + Sbjct: 4 TRFKINEMFETIQGEGMFTGVPAVFIRLQICNV-----------GCSWCDTKQTWDANNE 52 Query: 62 GGR--------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107 R ++ A+++ + + + ++ V+TGGEP L +A Sbjct: 53 DQRSFGEIITKQGDSPTWSDVDAAEIVA-MYQSQQFNAKHIVITGGEPCEYDLTALCEAF 111 Query: 108 NKRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNV 158 G +ET+GT E + W+ VSPK K+ E+K V Q NV Sbjct: 112 EAIGCRCQIETSGTSEIRVTPVTWVTVSPKVAMKGKLPVLSSSLERADEIKHPVATQKNV 171 Query: 159 SPENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + E +LQP+ T L I C Q WRLSVQTHK++ I Sbjct: 172 DQLDELLQGVELKSDVVIALQPISQK--PRATELCIETCIQR-NWRLSVQTHKYLSI 225 >gi|56460021|ref|YP_155302.1| organic radical activating protein [Idiomarina loihiensis L2TR] gi|56179031|gb|AAV81753.1| Organic radical activating enzyme [Idiomarina loihiensis L2TR] Length = 233 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 65/238 (27%), Positives = 95/238 (39%), Gaps = 47/238 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I EIF TLQGEG G ++F R GC + C +CDT Sbjct: 13 YRINEIFETLQGEGTFTGVPSIFLRLQGCPV-----------GCPWCDTQHTWETNPTDQ 61 Query: 58 --------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 + +++ D+I G ++ V+TGGEP + +PL +AL Sbjct: 62 VSIDALMAKTEASAKWSEMTAEDIIARFEQEG-YSAKHVVITGGEPAMFDLLPLGKALEA 120 Query: 110 RGFEIAVETNGTIEPP-QGIDWICVSPKAGCDL-------KIKGGQELKLVFPQVNVSPE 161 +G+++ +ET+GT E W+ VSPK + E+K P Sbjct: 121 KGYQLQIETSGTFELKVTDSTWVTVSPKLDMPGGYLVRPDCMARANEIK--HPIAMQKHI 178 Query: 162 NYIGFDFER--------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + + ER LQP+ T LA+ C WRLSVQ HK++ I Sbjct: 179 DALDSLLERCPPKADAIICLQPISQ--RPRATELAMKTCIAR-NWRLSVQMHKYLNIE 233 >gi|256425881|ref|YP_003126534.1| hypothetical protein Cpin_6932 [Chitinophaga pinensis DSM 2588] gi|256040789|gb|ACU64333.1| conserved hypothetical protein [Chitinophaga pinensis DSM 2588] Length = 209 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 68/214 (31%), Positives = 101/214 (47%), Gaps = 26/214 (12%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F TLQGEG + G+ A F R GC++ C +CD + Sbjct: 14 LPVMERFYTLQGEGNYQGQAAYFIRLGGCDV-----------GCHWCDVK----ESWDAS 58 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R+ + +++L+ + GR V+TGGEPL+ PL AL+ F +ET+G+ Sbjct: 59 RHPLIAISELVRD---AAVHPGRIAVITGGEPLMHNLDPLTDALHAASFRTHMETSGSSP 115 Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELKLV-FPQVNVS-PENYIGFDFER--FSLQPM 176 DWI +SP KA + ELK+V F + + + E Y LQP Sbjct: 116 LSGHWDWITLSPKKFKAPLPEVCEVAHELKVVIFNKSDFAWAEKYAALAGPHCKLYLQP- 174 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + T L I Y +NPKW+LS+QTHK+I + Sbjct: 175 EWEKSAQVTPLIIDYIKENPKWQLSLQTHKYINV 208 >gi|146298250|ref|YP_001192841.1| radical SAM domain-containing protein [Flavobacterium johnsoniae UW101] gi|146152668|gb|ABQ03522.1| Radical SAM domain protein [Flavobacterium johnsoniae UW101] Length = 210 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 60/215 (27%), Positives = 89/215 (41%), Gaps = 27/215 (12%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + E F T+QGEG H G A F R GC++ C +CD + Sbjct: 15 MLPLMEEFYTIQGEGFHTGTAAYFIRIGGCDV-----------GCHWCDVK----ESWNA 59 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + ++ V+TGGEPL L Q L + ++ +ET+G Sbjct: 60 ELHPPTNIDIIVN----NASSYANTVVVTGGEPLTWDMTLLTQQLKDKNLKVHIETSGAY 115 Query: 123 EPPQGIDWICVSPKAG---CDLKIKGGQELKLV----FPQVNVSPENYIGFDFERFSLQP 175 DWIC+SPK ELK++ + + + D LQP Sbjct: 116 PLSGTWDWICLSPKKNKLPTPDVYANAHELKVIIYNKHDFIFAEEQAELVNDNAILFLQP 175 Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + EE T L + Y NPKWR+S+QTHK++ I Sbjct: 176 -EWSKKEEMTPLIVDYVMNNPKWRVSLQTHKYLNI 209 >gi|326800682|ref|YP_004318501.1| radical SAM protein [Sphingobacterium sp. 21] gi|326551446|gb|ADZ79831.1| Radical SAM domain protein [Sphingobacterium sp. 21] Length = 230 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 63/216 (29%), Positives = 95/216 (43%), Gaps = 26/216 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 L + E F T+QGEG H G+ A F R GC++ C +CD + Sbjct: 33 TLLPLMEEFYTIQGEGYHTGKAAYFIRLGGCDV-----------GCHWCDVK----ESWD 77 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + + + D+I + V+TGGEPL+ L + L G + +ET+G Sbjct: 78 AELHPLTKADDIIRN---AARYPAKTVVITGGEPLIYNLDYLTRGLQDAGIKTFIETSGA 134 Query: 122 IEPPQGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVSPENYIGFDF---ERFSLQ 174 DW+C+SP KA I+ ELK +VF + + + LQ Sbjct: 135 YPLSGHWDWVCLSPKKFKAPLPDVIEAAGELKVIVFNKSDFEWAERYAAQIPVGRKLYLQ 194 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P + + T L I Y +NPKW +S+QTHK++ I Sbjct: 195 P-EWSKAAQMTPLIIDYVKENPKWEISLQTHKYLNI 229 >gi|209809367|ref|YP_002264905.1| hypothetical protein VSAL_II0580 [Aliivibrio salmonicida LFI1238] gi|208010929|emb|CAQ81334.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 226 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 90/239 (37%), Gaps = 49/239 (20%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57 L+ I E+F T+QGEG G ++F R GC + C +CDT Sbjct: 5 LFKINELFETIQGEGTFTGVPSIFLRLQGCPV-----------GCSWCDTKQTWDVELSD 53 Query: 58 ------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 Q+ D++ +Q ++ V+TGGEP + L + Sbjct: 54 KTDLATILAKTEDAPSWTELTALQIIDMLVQQG----YTAKHMVITGGEPCMYDLTSLTE 109 Query: 106 ALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDLKIK-------GGQELKL------ 151 L K G+ +ET+GT W+ VSPK K+ E+K Sbjct: 110 ELEKNGYRCQIETSGTYPILTSNNTWVTVSPKINMKGKLPVLDEALMRANEIKHPVGTTK 169 Query: 152 VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 Q+ + +LQP+ T L I C + WRLS+QTHK++ I Sbjct: 170 DIEQLEALLDGVNLLTDVTIALQPISQK--PRATELCIETCIKK-NWRLSIQTHKYLAI 225 >gi|167754369|ref|ZP_02426496.1| hypothetical protein ALIPUT_02663 [Alistipes putredinis DSM 17216] gi|167658994|gb|EDS03124.1| hypothetical protein ALIPUT_02663 [Alistipes putredinis DSM 17216] Length = 194 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 70/217 (32%), Positives = 106/217 (48%), Gaps = 34/217 (15%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF ++QGEG + G A+F R +GCNL +C FCDT+ Sbjct: 2 RVNEIFYSIQGEGRYTGTPAIFIRLAGCNL-----------RCDFCDTEH-----QPYQD 45 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-RGFEIAVETNGTIE 123 +++ I + + V+TGGEP+LQ+ LI L G + VETNGTI Sbjct: 46 LTEEEIMRQI------ADFPTSHVVITGGEPMLQITQSLIHRLRNGAGKFVQVETNGTIP 99 Query: 124 PPQ--GIDWICVSPK----AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177 +DWI SPK +L+++ ELK+V+ +++ Y G + + + LQP D Sbjct: 100 IKCYLPVDWITCSPKFDFCPHAELRLQRIDELKVVYQGQDMT--AYDGIEAKEYYLQPCD 157 Query: 178 GPF---LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 EN I+Y +PKW+LS+QT K + +R Sbjct: 158 FKDEARNAENLAATINYIKSHPKWKLSLQTQKILSVR 194 >gi|114563049|ref|YP_750562.1| radical activating enzyme [Shewanella frigidimarina NCIMB 400] gi|114334342|gb|ABI71724.1| radical activating enzyme [Shewanella frigidimarina NCIMB 400] Length = 222 Score = 217 bits (555), Expect = 5e-55, Method: Composition-based stats. Identities = 61/237 (25%), Positives = 95/237 (40%), Gaps = 43/237 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK Y + E+F T+QGEG + G A+F R GC + C +CDT Sbjct: 1 MK-YPVNEVFETIQGEGTYTGVPALFVRLQGCPV-----------GCAWCDTKQTW-DVL 47 Query: 61 KGGRYNVDQLADL--------------IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + +Q+ + + + + ++ VLTGGEP L L Sbjct: 48 PENKVTAEQVIQVDGTIGRWADHTGYTLLQAFHDKGFTAKHIVLTGGEPCLYNLTELTTI 107 Query: 107 LNKRGFEIAVETNGTIEPPQGID-WICVSPKAGC-------DLKIKGGQELKLVFPQVNV 158 + G+++ +ET+GT + D W+ VSPK + + E+K + Sbjct: 108 FIEAGYQVQIETSGTFDVKCHSDVWVTVSPKINMKGGYKVLEQALNRANEIKHPIATEHH 167 Query: 159 SPENY-----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E I + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 168 IDELDKLLLNIDVSDKTICLQPISQK--ARATELAMKVCISR-NWRLSIQTHKYLNI 221 >gi|71280858|ref|YP_269588.1| radical SAM domain-containing protein [Colwellia psychrerythraea 34H] gi|71146598|gb|AAZ27071.1| radical SAM domain protein [Colwellia psychrerythraea 34H] Length = 222 Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 102/238 (42%), Gaps = 48/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F T+QGEG G+ ++F R GC + C +CDT Sbjct: 3 YKINELFETIQGEGSFTGQPSIFIRLQGCPV-----------GCSWCDTKHTWDIELDDQ 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + ++ ++ + + L++E + ++ V+TGGEP + PL + Sbjct: 52 VSPDIMLAKKAETSQWANFSAEDILALVKE----KHFKAKHIVITGGEPCMVDLTPLCET 107 Query: 107 LNKRGFEIAVETNGTIE-PPQGIDWICVSPKA----GCDL---KIKGGQELKL-VFPQVN 157 G+ +ET+GT E W+ VSPK G D+ + E+K V + N Sbjct: 108 FEDLGYSTQIETSGTFEIITTEKCWVTVSPKIKMRGGYDILASAMSRANEIKHPVATEQN 167 Query: 158 VSPENYI----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 V + + LQP+ + T LAI+ C N WRLSVQ HK+IGI Sbjct: 168 VDDLKELLAMHQVENTPVYLQPISQK--KRATELAIATCIAN-NWRLSVQVHKYIGIE 222 >gi|308050954|ref|YP_003914520.1| hypothetical protein Fbal_3247 [Ferrimonas balearica DSM 9799] gi|307633144|gb|ADN77446.1| conserved hypothetical protein [Ferrimonas balearica DSM 9799] Length = 224 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 66/235 (28%), Positives = 88/235 (37%), Gaps = 43/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + E+F T+QGEG H G A+F R GC + C +CDT Sbjct: 6 YPVNELFETIQGEGVHTGVPAIFLRLQGCPV-----------GCSWCDTKHTWDLQENRK 54 Query: 64 RYNVDQLADLIEEQWI------------TGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111 D L E + V+TGGEP + PL + G Sbjct: 55 VMLSDVLVKTEESVMWCSVGPREILDLCMSRYTATHLVITGGEPCMYDLQPLCEVFEAEG 114 Query: 112 FEIAVETNGTIEP-PQGIDWICVSPKAGCDL-------KIKGGQELKLVFPQVNVSPENY 163 + I VET+GT W+ VSPK I E+K P V Sbjct: 115 YSIQVETSGTYPVMVSDSAWVTVSPKIKMRGGLSVLASAIDRADEIK--HPVATVKDIEQ 172 Query: 164 IGF-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + + +LQP+ + T LAI C + WRLSVQTHK++GI Sbjct: 173 LDELLTGSAGADAKVALQPISQK--PKATELAIRTCIKR-NWRLSVQTHKYLGIE 224 >gi|311746196|ref|ZP_07719981.1| radical activating enzyme [Algoriphagus sp. PR1] gi|126576423|gb|EAZ80701.1| radical activating enzyme [Algoriphagus sp. PR1] Length = 208 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 26/214 (12%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F T+QGEG G A F R GC++ C +CD + + G Sbjct: 13 LPLMEAFYTIQGEGRFTGHPAYFIRLGGCDV-----------GCVWCDVK----ESWEAG 57 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 ++ + + +++ E + GR V+TGGEPL+ PL L ++GF +ET+G Sbjct: 58 KWPILPIEEIVAEAV---KYPGRLVVITGGEPLMYDLGPLTSLLKEKGFTTNIETSGAHP 114 Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVSPENYIGF---DFERFSLQPM 176 DW+C SP K K ELK +VF + + + LQP Sbjct: 115 FSGDFDWVCFSPKKFKKPHPSIYKVANELKVVVFHNSDFAFAEEHALKVNENCELRLQP- 173 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E+ T L I+Y +P W++S+QTHKF+ I Sbjct: 174 EWSKSEKFTPLIINYSKYHPNWKISLQTHKFMDI 207 >gi|91793369|ref|YP_563020.1| radical activating enzyme [Shewanella denitrificans OS217] gi|91715371|gb|ABE55297.1| radical activating enzyme [Shewanella denitrificans OS217] Length = 222 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 91/235 (38%), Gaps = 44/235 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y + E+F T+QGEG G A+F R GC + C +CDT Sbjct: 3 YPVNEVFETIQGEGCFTGVPALFVRLQGCPV-----------GCAWCDTKQTWDVLADNK 51 Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 + GT G N D A LI G ++ VLTGGEP L + Sbjct: 52 VTPEQVITVDGTIGRWANHDG-ASLITAFKAKG-FTAKHIVLTGGEPCLYDLTDITHDFI 109 Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKLVFPQVNVSP 160 G+ + +ET+GT E D W+ VSPK K E+K N Sbjct: 110 AAGYSVQIETSGTFEVKCHQDVWVTVSPKINMKGGYKVLEQALIRANEIKHPIATQNHID 169 Query: 161 E-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E I + LQP+ T LA+ C WRLS+QTHK++ I Sbjct: 170 ELDELLADIDLSGKTICLQPISQKV--RATELAMKTCIAR-NWRLSIQTHKYLNI 221 >gi|85711961|ref|ZP_01043015.1| Organic radical activating enzyme [Idiomarina baltica OS145] gi|85694147|gb|EAQ32091.1| Organic radical activating enzyme [Idiomarina baltica OS145] Length = 223 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 60/238 (25%), Positives = 87/238 (36%), Gaps = 43/238 (18%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57 Y I EIF TLQGEG G ++F R GC + C +CDT Sbjct: 1 MTYRINEIFETLQGEGTFTGVPSIFIRLQGCPV-----------GCPWCDTQHTWDVKQE 49 Query: 58 ----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107 + + AD++ E ++ V+TGGEP + L + L Sbjct: 50 DQVSVATMMAKSEATSEWAEMSSADIV-ELIKQRGYRAKHVVITGGEPAMYDLRELGEVL 108 Query: 108 NKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDL-------KIKGGQELKLVFPQVNVS 159 +G + +ET+GT E W+ VSPK + E+K Sbjct: 109 EAQGMRLQIETSGTYELLITAGTWVTVSPKLDMPGGYLVRSDCLSRADEIKHPIAMQKHI 168 Query: 160 PENYIGFDFER------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 ++ LQP+ T LA+ C + WRLSVQ HK++ I Sbjct: 169 DALDRLLQGQKLKSDVVICLQPISQ--RPRATELAMKTCIER-NWRLSVQMHKYLNIE 223 >gi|148982371|ref|ZP_01816736.1| organic radical activating enzyme [Vibrionales bacterium SWAT-3] gi|145960507|gb|EDK25873.1| organic radical activating enzyme [Vibrionales bacterium SWAT-3] Length = 216 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 93/230 (40%), Gaps = 43/230 (18%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------------ 56 +F T+QGEG G AVF R C + C +CDT Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQICPV-----------GCSWCDTKQTWEALPEDETSLGD 49 Query: 57 --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114 ++ ++ ++ E G ++ V+TGGEP + VPL +A K G Sbjct: 50 IMVKTEDSPTWSSIDAQGIVNEYIKQG-YTAKHIVITGGEPCIYDLVPLTEAFEKHGCRC 108 Query: 115 AVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKL------VFPQVNVSP 160 +ET+GT E D W+ VSPK K++ E+K Q++ Sbjct: 109 QIETSGTSEVKATPDTWVTVSPKVAMKAKLEILDSALQRANEIKHPVGTSKDIEQLDGLL 168 Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E D +LQP+ + T L I C + WRLS+QTHK++ I Sbjct: 169 ERAEVSDDTVIALQPISQK--DRATKLCIDTCIER-NWRLSIQTHKYLSI 215 >gi|71282067|ref|YP_269647.1| hypothetical protein CPS_2947 [Colwellia psychrerythraea 34H] gi|71147807|gb|AAZ28280.1| conserved hypothetical protein [Colwellia psychrerythraea 34H] Length = 226 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 101/240 (42%), Gaps = 48/240 (20%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57 Y I EIF TLQGEG G+ ++F R GC + C +CDT Sbjct: 5 TTYKINEIFETLQGEGSFTGQPSIFIRLQGCPV-----------GCSWCDTKHTWEVSLE 53 Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104 + G + + QL +E +++ + ++ V+TGGEP + PL Sbjct: 54 QEVAQNNIVSKKSENDSWGIFTIVQL----KELFLSEGYQAKHIVITGGEPCMYDLKPLC 109 Query: 105 QALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQ 155 Q G+ VET+GT E W+ VSPK K E+K V + Sbjct: 110 QNFEALGYSCQVETSGTFEIQVSKKCWVTVSPKVNMKGGFKVLKSALLRADEIKHPVATE 169 Query: 156 VNVSP----ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 ++ N + ++ +QP+ + T LAI C +N WRLSVQ HK+IGI Sbjct: 170 QHIDDLKALLNEHEIENKQIYIQPISQK--KRATELAIRSCIEN-NWRLSVQVHKYIGIE 226 >gi|258621538|ref|ZP_05716571.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258586156|gb|EEW10872.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 216 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 91/230 (39%), Gaps = 43/230 (18%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------------ 56 +F T+QGEG G AVF R GC + C +CDT Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLESDQTSFPQ 49 Query: 57 --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114 ++ + + D+IE G + ++ V+TGGEP + L QA G + Sbjct: 50 ILLKTSDAPTWCQASAQDVIERYRAQG-YQAKHIVITGGEPCIYDLTELTQAFEAIGCQC 108 Query: 115 AVETNGTIEPPQG-IDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSPENYIG 165 +ET+GT E W+ VSPK K+ E+K V + ++ + + Sbjct: 109 QIETSGTYEILATPTTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATENDIDKLDELL 168 Query: 166 FDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ T L I C WRLS+QTHK++ I Sbjct: 169 VRASVDAKTVIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215 >gi|227537400|ref|ZP_03967449.1| radical SAM domain protein [Sphingobacterium spiritivorum ATCC 33300] gi|227242778|gb|EEI92793.1| radical SAM domain protein [Sphingobacterium spiritivorum ATCC 33300] Length = 207 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 64/214 (29%), Positives = 92/214 (42%), Gaps = 26/214 (12%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F T+QGEG H G+ A F R GC++ C +CD ++ + Sbjct: 12 LPLMEEFYTIQGEGYHTGKAAYFIRLGGCDV-----------GCHWCD-----VKESWDA 55 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 + AD I E + V+TGGEPL+ L L G + +ET+G Sbjct: 56 ELHPLTAADTIVEH--ANVHPSKTVVVTGGEPLIYNLDYLTSQLQNAGIQTFLETSGAYP 113 Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVN----VSPENYIGFDFERFSLQPM 176 DWIC+SP KA + ELK++ + + D + LQP Sbjct: 114 LSGHWDWICLSPKKFKAPRPDVLANAGELKVIVFNKSDFQWAEEHARLVNDTCKLYLQP- 172 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E T L I Y NPKW +S+QTHK++ I Sbjct: 173 EWSKAAEMTPLIIDYVMANPKWEISLQTHKYLNI 206 >gi|300772841|ref|ZP_07082710.1| radical SAM domain protein [Sphingobacterium spiritivorum ATCC 33861] gi|300759012|gb|EFK55839.1| radical SAM domain protein [Sphingobacterium spiritivorum ATCC 33861] Length = 207 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 64/214 (29%), Positives = 92/214 (42%), Gaps = 26/214 (12%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F T+QGEG H G+ A F R GC++ C +CD ++ + Sbjct: 12 LPLMEEFYTIQGEGYHTGKAAYFIRLGGCDV-----------GCHWCD-----VKESWDA 55 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 + AD I E + V+TGGEPL+ L L G + +ET+G Sbjct: 56 ELHPLTAADTIVEH--ANVHPSKTVVVTGGEPLIYNLDYLTSQLQNAGIQTFLETSGAYP 113 Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVN----VSPENYIGFDFERFSLQPM 176 DWIC+SP KA + ELK++ + + D + LQP Sbjct: 114 LSGHWDWICLSPKKFKAPRPDVLANAGELKVIVFNKSDFQWAEEHARLVSDTCKLYLQP- 172 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E T L I Y NPKW +S+QTHK++ I Sbjct: 173 EWSKAAEMTPLIIDYVMANPKWEISLQTHKYLNI 206 >gi|34557972|ref|NP_907787.1| organic radical activating enzyme [Wolinella succinogenes DSM 1740] gi|34483690|emb|CAE10687.1| conserved hypothetical protein-Organic radical activating enzymes [Wolinella succinogenes] Length = 193 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 69/211 (32%), Positives = 96/211 (45%), Gaps = 22/211 (10%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y + EIF ++QGEG H+G+ A+F R GCNL C FCD Sbjct: 1 MYPVTEIFYSIQGEGHHSGKAALFVRLHGCNL-----------ACDFCD-----EPSHTQ 44 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG-T 121 G Y ++E+ + V+TGGEP L PLI+ L K G+ +A+ETNG Sbjct: 45 GEYENQSQEAILEQLRA---YPAHFVVITGGEPTLFDLNPLIKFLQKEGYFVAIETNGYN 101 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD--GP 179 + Q DWI SPK L +G ELK + + F + LQP Sbjct: 102 LAHIQAADWITYSPKNWNTLAKEGYDELKFIIHHASDITPLLALFQEKPLYLQPQSDGSA 161 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 N + ++P+WRLS+QTHK + I Sbjct: 162 LNAANVARCVELILEHPEWRLSLQTHKILEI 192 >gi|56750231|ref|YP_170932.1| hypothetical protein syc0222_c [Synechococcus elongatus PCC 6301] gi|81300141|ref|YP_400349.1| hypothetical protein Synpcc7942_1332 [Synechococcus elongatus PCC 7942] gi|56685190|dbj|BAD78412.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81169022|gb|ABB57362.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 206 Score = 214 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 67/216 (31%), Positives = 100/216 (46%), Gaps = 27/216 (12%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I E F ++QGEG G A F R +GC++ C +CDT Q Sbjct: 11 TLPIVETFHSVQGEGAWMGCSAFFIRLAGCDV-----------GCPWCDTK----QSWPR 55 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ +ADL+E + ++ V+TGGEPLL L AL +G +ET+G+ Sbjct: 56 DRHPEVAIADLVEAAVAA---QPQFVVITGGEPLLHDLTELTNALRSQGLRCHLETSGSA 112 Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELKLVF---PQVNVSPENYIGFDFERFS-LQP 175 P DW+ +SP KA ELK+V + + + I LQP Sbjct: 113 SPSGSFDWVTLSPKPFKAVVAANYNWANELKVVIQTDADFDFAEQEAIAVPETTLKLLQP 172 Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 E+ + ++Y Q+P+WR+S+QTHKF+G+R Sbjct: 173 E--WNSPESCDRVVNYVRQHPRWRVSLQTHKFLGVR 206 >gi|86145928|ref|ZP_01064256.1| Organic radical activating enzyme [Vibrio sp. MED222] gi|85836383|gb|EAQ54513.1| Organic radical activating enzyme [Vibrio sp. MED222] Length = 216 Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 91/230 (39%), Gaps = 43/230 (18%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------------ 56 +F T+QGEG G AVF R C + C +CDT Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQICPV-----------GCSWCDTKQTWEALPEDETSLGD 49 Query: 57 --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114 ++ + ++ E G ++ V+TGGEP + VPL +A + G Sbjct: 50 IMVKTEDSPTWTAIDAQGIVNEYIKQG-YTAKHIVITGGEPCIYDLVPLTEAFEQHGCRC 108 Query: 115 AVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKL------VFPQVNVSP 160 +ET+GT E D W+ VSPK K+ E+K Q++V Sbjct: 109 QIETSGTSEVKATPDTWVTVSPKVAMKAKLDILDSALVRANEIKHPVGTGKDIEQLDVLI 168 Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + +LQP+ E T L I C + WRLS+QTHK++ I Sbjct: 169 ARADVPENTVIALQPISQK--ERATQLCIDTCIER-NWRLSIQTHKYLSI 215 >gi|84387075|ref|ZP_00990098.1| Organic radical activating enzyme [Vibrio splendidus 12B01] gi|84378150|gb|EAP95010.1| Organic radical activating enzyme [Vibrio splendidus 12B01] Length = 216 Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 91/230 (39%), Gaps = 43/230 (18%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------------ 56 +F T+QGEG G AVF R C + C +CDT Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQICPV-----------GCSWCDTKQTWEALPEDETSLGD 49 Query: 57 --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114 ++ ++ ++ E G ++ V+TGGEP + VPL +A + G Sbjct: 50 IMVKTEDSPTWSAIDAQGIVNEYIKQG-YTAKHIVITGGEPCIYDLVPLTEAFEQHGCRC 108 Query: 115 AVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKL------VFPQVNVSP 160 +ET+GT E D W+ VSPK K+ E+K Q++ Sbjct: 109 QIETSGTSEVKATPDTWVTVSPKVAMKAKLDILDSALVRANEIKHPVGTGKDIEQLDALI 168 Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + +LQP+ E T L I C + WRLS+QTHK++ I Sbjct: 169 ARADVPENTVIALQPISQK--ERATQLCIDTCIER-NWRLSIQTHKYLSI 215 >gi|91224504|ref|ZP_01259766.1| hypothetical protein V12G01_17742 [Vibrio alginolyticus 12G01] gi|91190846|gb|EAS77113.1| hypothetical protein V12G01_17742 [Vibrio alginolyticus 12G01] Length = 216 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 91/229 (39%), Gaps = 41/229 (17%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68 +F T+QGEG G AVF R C + C +CDT R D Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQECPV-----------GCSWCDTKQTWYADENDQRQIGD 49 Query: 69 QL-------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115 L A+ I EQ+ ++ V+TGGEP + PL +A G + Sbjct: 50 ILVKTEDSPTWCVASAENIVEQYQQQGFNAKHIVITGGEPCIYDLRPLTKAFEDMGCQCQ 109 Query: 116 VETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSPENYIGF 166 +ET+GT E W+ VSPK K+ E+K V Q ++ + + Sbjct: 110 IETSGTSEVITSENTWVTVSPKVAMKGKLPVLNSALERANEIKHPVGTQKDIDHLDDLLA 169 Query: 167 DFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + +LQP+ T L I C WRLSVQTHK++ I Sbjct: 170 NANVAAETIIALQPISQK--PRATQLCIDTCIAR-NWRLSVQTHKYLSI 215 >gi|258627553|ref|ZP_05722330.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258580135|gb|EEW05107.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 216 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 92/230 (40%), Gaps = 43/230 (18%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------------ 56 +F T+QGEG G AVF R GC + C +CDT Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLESDQTSFPQ 49 Query: 57 --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114 ++ + + D+IE G + ++ V+TGGEP + L QA G + Sbjct: 50 ILLKTSDAPTWCQASAQDVIERYRAQG-YQAKHIVITGGEPCIYDLTELTQAFEAIGCQC 108 Query: 115 AVETNGTIEPPQG-IDWICVSPKAGCDLK-------IKGGQELKL-VFPQVNVSPENYIG 165 +ET+GT E W+ VSPK K ++ E+K V + ++ + + Sbjct: 109 QIETSGTYEILATPTTWVTVSPKVAMKGKLLILDSALQRANEIKHPVATEKDIDNLDELL 168 Query: 166 FDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ T L I C WRLS+QTHK++ I Sbjct: 169 VRASVDTKTVIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215 >gi|78185803|ref|YP_378237.1| organic radical activating protein [Synechococcus sp. CC9902] gi|78170097|gb|ABB27194.1| possible organic radical activating enzyme [Synechococcus sp. CC9902] Length = 205 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 67/218 (30%), Positives = 99/218 (45%), Gaps = 25/218 (11%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + + E F +LQGEG H GR A F R +GCN+ C +CDT Sbjct: 5 RSIPVVETFHSLQGEGHHYGRSAFFIRLAGCNV-----------GCTWCDTKHSW----P 49 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNG 120 + + L + + + V+TGGEPL PL AL++ G I +ET+G Sbjct: 50 MANHAKQDVDALAVQATQAKDAGAAFVVITGGEPLHHNLQPLTDALDRSCGLPIHLETSG 109 Query: 121 TIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVF-PQVNVSPENYIGFD---FERFSL 173 + DW+ +SPK + + ELK+V +VS + + D + Sbjct: 110 VDQLSGRFDWVTLSPKRHHPPQQALLSRCDELKVVVLDTDDVSFAHAMANDTSTAAHLLV 169 Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 QP+ E LAI + Q+P+WRLS+Q HKF+ IR Sbjct: 170 QPV--WDSETAQELAIHHVKQHPRWRLSLQNHKFLQIR 205 >gi|308049094|ref|YP_003912660.1| radical activating enzyme [Ferrimonas balearica DSM 9799] gi|307631284|gb|ADN75586.1| radical activating enzyme [Ferrimonas balearica DSM 9799] Length = 222 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 94/234 (40%), Gaps = 42/234 (17%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y + EIF T+QGEG G AVF R GC + C +CDT Sbjct: 3 YPVNEIFETIQGEGHFTGVPAVFLRLQGCPV-----------GCAWCDTRHTWEVLAEDQ 51 Query: 58 --------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 G R+ L L+ + R+ V+TGGEP + PL + + Sbjct: 52 VEPGLVIGAGDGEPRWAQWPLEQLVA-HLTGPQYRARHLVITGGEPCMYDLRPLTERMIA 110 Query: 110 RGFEIAVETNGTIEPPQGI-DWICVSPKAGCDL-------KIKGGQELKL-VFPQVNVSP 160 G+ +ET+G E W+ VSPK G ++ E+K V Q +V Sbjct: 111 AGWRCQIETSGCFEVKTDPQTWVTVSPKVGMKGGLEVQRSALERANEIKHPVAMQKHVDE 170 Query: 161 ENY----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + + +LQP+ L + C + WRLSVQTHK++ I Sbjct: 171 LDALLAGVALEGKEVALQPISQQH--RANELCVRVCIER-NWRLSVQTHKYLNI 221 >gi|262192386|ref|ZP_06050539.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae CT 5369-93] gi|262031739|gb|EEY50324.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae CT 5369-93] Length = 216 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 91/230 (39%), Gaps = 43/230 (18%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------------ 56 +F T+QGEG G AVF R GC + C +CDT Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSDQTSFSQ 49 Query: 57 --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114 ++ + + ++++ G + ++ V+TGGEP + L QA G Sbjct: 50 ILLKTSDAPTWCQASAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFEAMGCRC 108 Query: 115 AVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSPENYIG 165 +ET+GT E W+ VSPK K+ E+K V + ++ + + Sbjct: 109 QIETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELL 168 Query: 166 FDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 169 ARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215 >gi|120437087|ref|YP_862773.1| hypothetical protein GFO_2752 [Gramella forsetii KT0803] gi|117579237|emb|CAL67706.1| conserved hypothetical protein [Gramella forsetii KT0803] Length = 210 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 63/215 (29%), Positives = 96/215 (44%), Gaps = 27/215 (12%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + E F T+QGEG H G A F R GC++ C +CD + Sbjct: 15 MLPLMEEFYTIQGEGFHKGTAAYFIRIGGCDV-----------GCHWCDVK----ESWDA 59 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + ++ ++E K + V+TGGEPL L +L K+G +I +ET+G Sbjct: 60 EVHPPTRIGQIVE----NAVKYSKTIVITGGEPLTWDMTELTGSLKKKGCDIHIETSGAY 115 Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVF---PQVNVSPENYIGF-DFERFSLQP 175 + DWIC+SPK D ELK++ + + E + LQP Sbjct: 116 DLTGTWDWICLSPKKIKLPKDKIYPVANELKVIVFNKHDLKFAEEQAAKVGEKCVLYLQP 175 Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + EE L + Y NPKW++S+QTHK++ I Sbjct: 176 -EWSKREEMIPLIVDYVMANPKWKVSLQTHKYLNI 209 >gi|126662368|ref|ZP_01733367.1| hypothetical protein FBBAL38_03415 [Flavobacteria bacterium BAL38] gi|126625747|gb|EAZ96436.1| hypothetical protein FBBAL38_03415 [Flavobacteria bacterium BAL38] Length = 210 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 62/216 (28%), Positives = 92/216 (42%), Gaps = 27/216 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 ++ + E F T+QGEG H G A F R GC++ C +CD ++ + Sbjct: 14 EMLPLMEEFYTIQGEGYHTGTAAYFIRIGGCDV-----------GCHWCD-----VKESW 57 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + D+I +K V+TGGEPL L L ++ + +ET+G Sbjct: 58 NAELHPPTNTDIIVS---NAKKYADTVVVTGGEPLTWDMTLLTSKLKEQNLRVHIETSGA 114 Query: 122 IEPPQGIDWICVSPKAG---CDLKIKGGQELKLVF---PQVNVSPENYIGFDFERF-SLQ 174 E DW C+SPK ELK++ + E + LQ Sbjct: 115 YEVTGTWDWFCLSPKKNKLPVQSAYDIANELKVIIYNKHDFIFAEEQAAKVNPNAILFLQ 174 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P + EE T L + Y NPKWR+S+QTHK++ I Sbjct: 175 P-EWSKKEEMTPLIVDYVMNNPKWRVSLQTHKYLNI 209 >gi|325103801|ref|YP_004273455.1| Radical SAM domain protein [Pedobacter saltans DSM 12145] gi|324972649|gb|ADY51633.1| Radical SAM domain protein [Pedobacter saltans DSM 12145] Length = 207 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 63/216 (29%), Positives = 97/216 (44%), Gaps = 26/216 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + + E F T+QGEG + G+ A F R GC++ C +CD ++ + Sbjct: 10 SMLPLMEEFYTIQGEGFNTGKAAYFIRLGGCDV-----------GCHWCD-----VKESW 53 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + AD I E + G+ V+TGGEPLL L L ++G +ET+G Sbjct: 54 DAELHPLTSADKIVEN--AEKYPGKAVVITGGEPLLYNLDYLTAKLKEKGILTFIETSGA 111 Query: 122 IEPPQGIDWICVSPKA---GCDLKIKGGQELK-LVFPQVNVSPENYIGF---DFERFSLQ 174 DW+C+SPK + ELK +VF + + D + LQ Sbjct: 112 YPISGSWDWVCLSPKKFKSPSPNIAQHADELKIIVFNKSDFEWAEAHARTVGDKCKLYLQ 171 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P + ++ L I Y +NPKW +S+QTHK++ I Sbjct: 172 P-EWSKSQDMLPLIIEYVKENPKWEISLQTHKYLNI 206 >gi|89890614|ref|ZP_01202124.1| organic radical activating enzyme [Flavobacteria bacterium BBFL7] gi|89517529|gb|EAS20186.1| organic radical activating enzyme [Flavobacteria bacterium BBFL7] Length = 219 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 27/216 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + + E F T+QGEG H G+ A F R GC++ C +CD + Sbjct: 23 MMLPLMEEFYTIQGEGSHTGKAAYFIRVGGCDV-----------GCHWCDVK----ESWD 67 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 ++ + ++ K + V+TGGEPL PL L + G ++ +ET+G Sbjct: 68 QEKHPPTAVEAIVA----NAAKYSKTIVVTGGEPLTWDMGPLTTGLKEEGMQVHIETSGA 123 Query: 122 IEPPQGIDWICVSP---KAGCDLKIKGGQELKLV----FPQVNVSPENYIGFDFERFSLQ 174 DWIC+SP K + ELK++ E + LQ Sbjct: 124 YPLSGTWDWICLSPKKMKMPLPEVYEAAHELKVIVFNKHDFAFAKAEAEKVSSNCKLYLQ 183 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P + E+ L + +NP+W +S+QTHK++ I Sbjct: 184 P-EWSVREKMIPLITEFVMENPEWHVSLQTHKYLNI 218 >gi|86132652|ref|ZP_01051245.1| radical SAM superfamily protein [Dokdonia donghaensis MED134] gi|85816894|gb|EAQ38079.1| radical SAM superfamily protein [Dokdonia donghaensis MED134] Length = 213 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 61/216 (28%), Positives = 96/216 (44%), Gaps = 27/216 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 ++ + E F T+QGEG H G A F R GC++ C +CD Sbjct: 17 EMLPLMEEFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCDVKESW-DAAI 64 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 N + +A+ K V+TGGEPL+ PL + L G +ET+G Sbjct: 65 HPPTNANTIAE-------NAAKYSDTIVVTGGEPLMWDMNPLTKKLKSLGLTTHIETSGA 117 Query: 122 IEPPQGIDWICVSPKAGCDLK---IKGGQELKLVF---PQVNVSPENYIGF-DFERFSLQ 174 E DWIC+SPK K ++ ELK++ + + ++ + LQ Sbjct: 118 YELSGDWDWICLSPKKRMLPKASVLEKANELKVIIFNKSDFDFAEKHATQVGEDCILYLQ 177 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P + ++ L + Y +NPKW++S+QTHK++ I Sbjct: 178 P-EWSVRDKMVPLIVDYVMKNPKWKVSLQTHKYLNI 212 >gi|262169329|ref|ZP_06037021.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae RC27] gi|262022142|gb|EEY40851.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae RC27] gi|327484035|gb|AEA78442.1| Queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae LMA3894-4] Length = 216 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 59/229 (25%), Positives = 88/229 (38%), Gaps = 41/229 (17%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ---------- 58 +F T+QGEG G AVF R GC + C +CDT Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSDQTSFSQ 49 Query: 59 ---GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115 T A + +++ + ++ V+TGGEP + L QA G Sbjct: 50 ILLKTNDAPTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQ 109 Query: 116 VETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSPENYIGF 166 +ET+GT E W+ VSPK K+ E+K V + ++ + + Sbjct: 110 IETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLA 169 Query: 167 DFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 170 RAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215 >gi|91215960|ref|ZP_01252929.1| hypothetical protein P700755_15536 [Psychroflexus torquis ATCC 700755] gi|91185937|gb|EAS72311.1| hypothetical protein P700755_15536 [Psychroflexus torquis ATCC 700755] Length = 210 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 64/220 (29%), Positives = 95/220 (43%), Gaps = 37/220 (16%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + E F T+QGEG H G A F R GC++ C +CD + Sbjct: 15 MLPLMEEFYTIQGEGYHTGTAAYFIRIGGCDV-----------GCHWCDVK----ESWDP 59 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ ++ +IE +K V+TGGEPL L Q L I +ET+G Sbjct: 60 ERHPPTRIGSIIE----NAKKYSNTIVITGGEPLTWDMSMLTQGLKDNQLSIHIETSGAY 115 Query: 123 EPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVNVSPENYIGFDFER--------- 170 + DWIC+SPK K ELK++ + ++ F E Sbjct: 116 DLTGVWDWICLSPKKNKLPKPEIYPKVDELKVI-----IFNKHDFKFAEEHASQVGEDCE 170 Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP + E+ T + Y ++PKWR+S+QTHK++ I Sbjct: 171 LFLQP-EWSVREKMTPQIVEYVMKHPKWRISLQTHKYLNI 209 >gi|332170651|gb|AEE19906.1| Radical SAM domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 213 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 61/216 (28%), Positives = 95/216 (43%), Gaps = 27/216 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 ++ + E F T+QGEG H G A F R GC++ C +CD Sbjct: 17 EMLPLMEEFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCDVKESW-DAAI 64 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 N + +A+ K V+TGGEPL+ PL L G +ET+G Sbjct: 65 HPPTNANTIAE-------NAAKYSDTIVVTGGEPLMWDMNPLTHKLKSLGLTTHIETSGA 117 Query: 122 IEPPQGIDWICVSPKAGCDLK---IKGGQELKLVF---PQVNVSPENYIGF-DFERFSLQ 174 E DWIC+SPK K ++ ELK++ + + ++ + LQ Sbjct: 118 YELSGEWDWICLSPKKRMLPKASVLEKANELKVIIFNKSDFDFAEKHAAQVGEDCILYLQ 177 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P + ++ L + Y +NPKW++S+QTHK++ I Sbjct: 178 P-EWSVRDKMVPLIVDYVMKNPKWKVSLQTHKYLNI 212 >gi|237809236|ref|YP_002893676.1| radical activating enzyme [Tolumonas auensis DSM 9187] gi|237501497|gb|ACQ94090.1| radical activating enzyme [Tolumonas auensis DSM 9187] Length = 225 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 88/235 (37%), Gaps = 42/235 (17%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y I EIF ++QGEG +G A+F R GC C +CDT Sbjct: 6 YPINEIFQSIQGEGFFSGVPAIFVRLQGC-----------KVGCSWCDTKHSWELDADNL 54 Query: 57 -------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 ++ +++ + E R+ V+TGGEP + L Q L Sbjct: 55 IPVRQLFTDKKPKAGWSWLSPEEIL-SCFSAEEYTARHVVITGGEPCEYDLMVLSQTLIA 113 Query: 110 RGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKLVFP---QVNV 158 G+ + +ET+GT W+ VSPK + E+K + Sbjct: 114 HGYRVQIETSGTQPVQADDACWVTVSPKINMAGGYDVLPDVLLRANEIKHPVATAKHIAQ 173 Query: 159 SPENYIGFD--FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 G D + LQP+ T LA+ C Q WRLSVQ HK++ I Sbjct: 174 LDALLAGIDTSEKVICLQPISQK--SRATELAMKICIQR-NWRLSVQLHKYLDIE 225 >gi|328950182|ref|YP_004367517.1| Radical SAM domain protein [Marinithermus hydrothermalis DSM 14884] gi|328450506|gb|AEB11407.1| Radical SAM domain protein [Marinithermus hydrothermalis DSM 14884] Length = 199 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 65/217 (29%), Positives = 94/217 (43%), Gaps = 31/217 (14%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + E F ++QGEG G A F R +GC++ C FCDT + Sbjct: 5 YPVVETFHSVQGEGHWTGTSAFFIRLAGCDV-----------GCWFCDTK----ESWDMS 49 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 ++ + L+ E V+TGGEPL+ PL +AL G +ET+G Sbjct: 50 QHPWRSVDALVAEAQAAS---PAIVVVTGGEPLMHDLTPLSRALRAAGLRAHLETSGAHP 106 Query: 124 PPQGIDWICVSPK---AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF------SLQ 174 DW+ +SPK ELK+V VN S + R LQ Sbjct: 107 FSGAWDWVTLSPKKFRPPHPSVYPHVHELKVVV--VNQSDLAWAETHAARVPPTALKYLQ 164 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 P E++ L + Y Q+P+WR+S+QTHK +G+R Sbjct: 165 PE--WSTEKSRQLILEYVLQHPEWRVSLQTHKVLGVR 199 >gi|218438303|ref|YP_002376632.1| radical SAM protein [Cyanothece sp. PCC 7424] gi|218171031|gb|ACK69764.1| Radical SAM domain protein [Cyanothece sp. PCC 7424] Length = 210 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 59/216 (27%), Positives = 90/216 (41%), Gaps = 27/216 (12%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 Y I E F ++QGEG G A F R GC+++ C +CD + Sbjct: 15 TYPIVETFHSVQGEGAWTGVSAFFIRLGGCDVY-----------CPWCDQKESW-NAKRH 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +VD LA ++TGGEPL+ PL L K G ++ +ET+G+ Sbjct: 63 PHQSVDTLAQA------AKMANPAIVIITGGEPLMHDLDPLTTELKKLGLQVHLETSGSH 116 Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQ---VNVSPENYIGFDFERF-SLQP 175 DW+ SPK D ELK+V ++++ LQP Sbjct: 117 PFSGNFDWVTFSPKPYKKPHDSIYNYVNELKVVVANEEDLHMAEVQAAKLSLTVIKYLQP 176 Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + L + ++P+WR+S+QTHKF+ +R Sbjct: 177 EWNT--PNSKELIFDFVLKHPQWRISLQTHKFLNVR 210 >gi|260778537|ref|ZP_05887429.1| queuosine Biosynthesis QueE Radical SAM [Vibrio coralliilyticus ATCC BAA-450] gi|260604701|gb|EEX30996.1| queuosine Biosynthesis QueE Radical SAM [Vibrio coralliilyticus ATCC BAA-450] Length = 216 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 88/229 (38%), Gaps = 41/229 (17%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68 +F T+QGEG G +VF R C + C +CDT + R + Sbjct: 1 MFETIQGEGVFTGVPSVFVRLQICPV-----------GCAWCDTKQTWDATPQDERPLAE 49 Query: 69 QLADL-------------IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115 LA I EQ+ + ++ V+TGGEP + PL +A G Sbjct: 50 VLAKTEDSPTWCSVSGGDIIEQYRQQGYQAKHIVITGGEPCIYDLRPLTEAFEAIGCRCQ 109 Query: 116 VETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL------VFPQVNVSPE 161 +ET+GT W+ VSPK K+ E+K Q++ E Sbjct: 110 IETSGTSPILASENTWVTVSPKVAMKGKLPVLDCALLRANEIKHPVATDKDIEQLDALIE 169 Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 170 RAGVPESTTIALQPISQK--PRATQLCIDTCIAR-NWRLSIQTHKYLSI 215 >gi|119944858|ref|YP_942538.1| radical SAM domain-containing protein [Psychromonas ingrahamii 37] gi|119863462|gb|ABM02939.1| Radical SAM domain protein [Psychromonas ingrahamii 37] Length = 246 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 60/238 (25%), Positives = 93/238 (39%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y + E+F T+QGEG + G A+F R GC++ C +CDT Sbjct: 26 YKVNELFQTIQGEGFNTGVPAIFLRLQGCDV-----------GCAWCDTKHTWEINPDKQ 74 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + T+ N ++ I+ V+TGGEP L L Sbjct: 75 TELILLTGSSNESTRWANVNAREIVAEIKRLG----YSANLVVITGGEPCLADLRELTTV 130 Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL------V 152 L++ F+ +ET+GT W+ +SPK ++ E+K Sbjct: 131 LHEFDFKTQIETSGTYPVLVAPPTWVTLSPKVNMRAGKVVLQSALERADEIKHPVGTEKD 190 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 Q++ EN + + LQP+ + T L C + WRLSVQ HK++GI Sbjct: 191 IEQLDALLENLKSIEDKVICLQPISQKV--KATLLCSQVCIER-NWRLSVQMHKYLGI 245 >gi|116071889|ref|ZP_01469157.1| possible organic radical activating enzyme [Synechococcus sp. BL107] gi|116065512|gb|EAU71270.1| possible organic radical activating enzyme [Synechococcus sp. BL107] Length = 205 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 67/218 (30%), Positives = 101/218 (46%), Gaps = 25/218 (11%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + + E F +LQGEG H GR A F R +GCN+ C +CDT Sbjct: 5 RSIPVVETFHSLQGEGHHCGRSAFFIRLAGCNV-----------GCAWCDTKHSW----P 49 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNG 120 + + L + + + V+TGGEPL PL AL++ G I +ET+G Sbjct: 50 MASHAKQDVDGLARQARQAKDAGAAFVVITGGEPLHHNLQPLTDALDRICGLPIHLETSG 109 Query: 121 TIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVF-PQVNVSPENYIGFD---FERFSL 173 + DW+ +SPK + + ELK+V +VS + + D + Sbjct: 110 VDQLSGRFDWVTLSPKRHRPPQQALLSRCDELKVVVLDTDDVSFAHAMANDTSTATHLLV 169 Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 QP+ E +LAI + Q+P+WRLS+Q+HKF+ IR Sbjct: 170 QPV--WDSETAQDLAIHHVQQHPRWRLSLQSHKFLQIR 205 >gi|67924094|ref|ZP_00517541.1| Radical SAM [Crocosphaera watsonii WH 8501] gi|67854055|gb|EAM49367.1| Radical SAM [Crocosphaera watsonii WH 8501] Length = 213 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 64/216 (29%), Positives = 96/216 (44%), Gaps = 27/216 (12%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 Y I E F +LQGEG G A F R +GC++ C +CD + Sbjct: 18 TYPIVETFHSLQGEGTWTGVNAFFIRLAGCDV-----------HCPWCDQK----ESWTS 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +Y + ++ E ++ V+TGGEPL+ PL +AL K G + +ET+G+ Sbjct: 63 KKYPQQSI-KILAE--VSKMANPFMVVITGGEPLMYDLFPLTKALKKLGLRVHLETSGSH 119 Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQVNV---SPENYIGFDFERF-SLQP 175 DW+ SPK + ELK+V + E E LQP Sbjct: 120 SFTGQFDWVTFSPKPFKLPHESIYSQVNELKIVIANQEDLHWAEEEAKKVPREAIKYLQP 179 Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 E+ +L Y ++P+WR+S+QTHKF+G+R Sbjct: 180 EWNT--PESQSLIFDYILKHPQWRMSLQTHKFLGVR 213 >gi|126657071|ref|ZP_01728242.1| hypothetical protein CY0110_28234 [Cyanothece sp. CCY0110] gi|126621614|gb|EAZ92324.1| hypothetical protein CY0110_28234 [Cyanothece sp. CCY0110] Length = 213 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 62/218 (28%), Positives = 93/218 (42%), Gaps = 27/218 (12%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 +K Y I E F +LQGEG G A F R +GC++ C +CD + Sbjct: 16 LKTYPIVERFHSLQGEGTWTGMSAFFIRLAGCDV-----------HCPWCDQK----ESW 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 Y + L + V+TGGEPL+ PL + L + G + +ET+G Sbjct: 61 NSNLYPQQSIKTLTDAAKAAN---PAMVVITGGEPLIHDLFPLTKGLKQLGLRVHLETSG 117 Query: 121 TIEPPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQ---VNVSPENYIGFDFERF-SL 173 DWI +SP K + ELK++ +N + + + L Sbjct: 118 AYPLTGEFDWITLSPKPFKVPHETVYSQVNELKVIIANEADLNWAEKQEKKVPSQTIKYL 177 Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 QP E+ +L Y NP+WR+S+Q HKF+G+R Sbjct: 178 QPE--WNSPESKSLIFDYILSNPQWRMSLQIHKFLGVR 213 >gi|315126983|ref|YP_004068986.1| queC protein [Pseudoalteromonas sp. SM9913] gi|315015497|gb|ADT68835.1| queC protein [Pseudoalteromonas sp. SM9913] Length = 215 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 59/228 (25%), Positives = 89/228 (39%), Gaps = 40/228 (17%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---------QG 59 +F T+QGE G ++F R GC + C +CDT Sbjct: 1 MFETIQGEASFTGTPSIFLRLQGCPV-----------GCSWCDTKQTWDVDNVYKVSLDD 49 Query: 60 TKGGRYNVDQLADL----IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115 T + + D A+ + E + + ++ V+TGGEP + P+ L+ GF Sbjct: 50 TVEKKADSDHWAEASAAQVLELFKSRGYTAKHVVITGGEPCMYDLNPVCNLLHDHGFSTQ 109 Query: 116 VETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQVNVSPENYIGF- 166 +ET+GT E W+ VSPK ++ E+K E F Sbjct: 110 IETSGTFEILAPAQTWVTVSPKINMRGGYKVLSSAMQRADEIKHPVAMQKHVEELEELFT 169 Query: 167 ----DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + LQP+ T LAI C WRLS+Q HK++GI Sbjct: 170 ATGVNPKLVYLQPISQKTS--ATKLAIDTCIAK-NWRLSIQVHKYLGI 214 >gi|312887506|ref|ZP_07747102.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603] gi|311299994|gb|EFQ77067.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603] Length = 207 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 63/216 (29%), Positives = 95/216 (43%), Gaps = 26/216 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 L + E F T+QGEG + G+ A F R GC++ C +CD + Sbjct: 10 TLLPLMEEFYTIQGEGYNTGKAAYFIRLGGCDV-----------GCHWCDVKESW-DASI 57 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 D + D + G+ V+TGGEPL+ L L ++G + +ET+G Sbjct: 58 HPLTPSDTIVD------NAVKYPGKAVVVTGGEPLIYNLDYLTAQLQQKGIKTFIETSGA 111 Query: 122 IEPPQGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVS-PENYIGF--DFERFSLQ 174 DWIC+SP KA ELK +VF + + + E Y + LQ Sbjct: 112 YPLSGSWDWICLSPKKFKAPSASVAPYAHELKVIVFNKSDFAWAEQYAALVSPGCKLYLQ 171 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P + +E L + Y NP+W +S+QTHK++ I Sbjct: 172 P-EWSKSKEMIPLIVDYVMNNPQWEISLQTHKYLNI 206 >gi|225011685|ref|ZP_03702123.1| Radical SAM domain protein [Flavobacteria bacterium MS024-2A] gi|225004188|gb|EEG42160.1| Radical SAM domain protein [Flavobacteria bacterium MS024-2A] Length = 210 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 64/214 (29%), Positives = 95/214 (44%), Gaps = 27/214 (12%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F TLQGEG H G A F R GC++ C +CD + Sbjct: 16 LPLMEAFYTLQGEGYHKGSAAYFIRIGGCDV-----------GCHWCDVK----ESWNAD 60 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 + Q+ ++ E +K V+TGGEPL+ PL AL+K +I +ET+G Sbjct: 61 LHPPTQIDSIVAE----AKKYSDTVVVTGGEPLMWKMDPLTDALHKEDMQIHIETSGAYS 116 Query: 124 PPQGIDWICVSPKAGCDLKIKG---GQELKLVFPQVN---VSPENYIGFDFE-RFSLQPM 176 DW C+SPK ++ ELK++ + + E E + LQP Sbjct: 117 LSGSWDWFCLSPKKNKLPIVEAYAVADELKMIVYNKDDFRFAEEQAAKVGQECKLFLQP- 175 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E L + Y NPKW++S+QTHK++ I Sbjct: 176 EWSKRETVMPLLVDYVLGNPKWKVSLQTHKYLNI 209 >gi|33864484|ref|NP_896044.1| putative organic radical activating protein [Prochlorococcus marinus str. MIT 9313] gi|33641264|emb|CAE22394.1| possible organic radical activating enzyme [Prochlorococcus marinus str. MIT 9313] Length = 226 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 95/239 (39%), Gaps = 48/239 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F +LQGEG H GR A F R +GC++ C +CDT Sbjct: 5 LPVVETFHSLQGEGAHVGRSAFFIRLAGCDV-----------GCSWCDTKHSW----NSR 49 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-------GFEIAV 116 + L L EE + + VLTGGEPL PL +AL++ I + Sbjct: 50 NHPQITLEQLAEETATAAKDGAAFVVLTGGEPLQHNIAPLCEALHRATETNHGGPLAIHL 109 Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVNVS--PENYIGFDFER- 170 ET+G + WI +SPK + + ELK+V + + E+ E Sbjct: 110 ETSGVNQLSGVPTWITLSPKRHAPPRTDLLAACHELKVVVHETDDLNFAEDMAKAALEAR 169 Query: 171 ------------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 LQP G LA + +P WRLS+QTHK++GIR Sbjct: 170 KNDNASQSRLSNTSKEPLLFLQP--GWKTTRGQQLAFEHVQSHPHWRLSMQTHKWLGIR 226 >gi|255531962|ref|YP_003092334.1| Radical SAM domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344946|gb|ACU04272.1| Radical SAM domain protein [Pedobacter heparinus DSM 2366] Length = 207 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 65/216 (30%), Positives = 91/216 (42%), Gaps = 26/216 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 L + E F T+QGEG + G+ A F R GC++ C +CD Sbjct: 10 TLLPLMEEFYTIQGEGFNTGKAAYFIRLGGCDV-----------GCHWCDVKESW-DAEL 57 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 D + E G+ V+TGGEPL+ L + L ++G +ET+G Sbjct: 58 HPLTPADAIVAKAES------YPGKAVVITGGEPLIYNLDYLTRRLREKGILTFIETSGA 111 Query: 122 IEPPQGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVSPENYIGFDFE---RFSLQ 174 DWIC+SP KA ELK +VF + + + LQ Sbjct: 112 YPLSGDWDWICLSPKKFKAPRPDITPYANELKVIVFNKSDFEWAEKYAETVSANCKLYLQ 171 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P + +E T L I Y NPKW +S+QTHKF+ I Sbjct: 172 P-EWSKSKEITPLIIDYVMANPKWEISLQTHKFLNI 206 >gi|313206128|ref|YP_004045305.1| radical sam domain protein [Riemerella anatipestifer DSM 15868] gi|312445444|gb|ADQ81799.1| Radical SAM domain protein [Riemerella anatipestifer DSM 15868] gi|315022935|gb|EFT35958.1| Queuosine Biosynthesis QueE Radical SAM [Riemerella anatipestifer RA-YM] Length = 209 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 61/213 (28%), Positives = 90/213 (42%), Gaps = 27/213 (12%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + E F T+QGEG + G+ A F R GC++ C +CD Sbjct: 16 PVMEHFYTIQGEGAYTGKAAYFIRLGGCDV-----------GCHWCDVKESW-DPNLHPL 63 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + +++A + + VLTGGEPL+ L + L G I +ET+G E Sbjct: 64 MDAEEVAQI-------AANHSKTIVLTGGEPLMWNLEILTKKLKDLGCTIHIETSGAYEI 116 Query: 125 PQGIDWICVSPKAGCDLK---IKGGQELKLVF---PQVNVSPENYIGF-DFERFSLQPMD 177 IDW+C+SPK K ELK++ + E +F LQ + Sbjct: 117 SGHIDWVCLSPKKTGLPKESIYAKANELKVIIFNNHDFKFAEEQASKVSQNCKFYLQ-SE 175 Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +E Y +NPKW+ SVQTHK++ I Sbjct: 176 WSKRDEMYPKITDYILENPKWQASVQTHKYLNI 208 >gi|312129858|ref|YP_003997198.1| radical sam domain protein [Leadbetterella byssophila DSM 17132] gi|311906404|gb|ADQ16845.1| Radical SAM domain protein [Leadbetterella byssophila DSM 17132] Length = 202 Score = 210 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 62/214 (28%), Positives = 93/214 (43%), Gaps = 26/214 (12%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F TLQGEG H+G+ A F R GC++ C +CD Sbjct: 7 LPVMESFYTLQGEGFHSGKAAYFIRLGGCDV-----------GCVWCDVKESW-DAEAHP 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 ++ V+ + + E GR V+TGGEPL+ L L ++GF+ +ET+G Sbjct: 55 QFRVEDIVN------GALEYPGRLAVITGGEPLMYDLNELTAELKQKGFQTNIETSGAHP 108 Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVSPENYIGF---DFERFSLQPM 176 DWIC SP KA + ELK +V+ + + LQ + Sbjct: 109 LSGDWDWICFSPKKFKAPLEEFYAVANELKVIVYNSSDFDFAEIHAAKVNPDCKLFLQ-V 167 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E + Y NP+WR+S+QTHK++ I Sbjct: 168 EWDRRERMMPSIVEYVKANPQWRVSIQTHKYMNI 201 >gi|295135621|ref|YP_003586297.1| radical SAM superfamily protein [Zunongwangia profunda SM-A87] gi|294983636|gb|ADF54101.1| radical SAM superfamily protein [Zunongwangia profunda SM-A87] Length = 223 Score = 210 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 62/215 (28%), Positives = 95/215 (44%), Gaps = 27/215 (12%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + E F T+QGEG H G A F R GC++ C +CD + Sbjct: 28 MLPLMEEFYTIQGEGYHKGTAAYFIRIGGCDV-----------GCHWCDVK----ESWNA 72 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 G + + +++E K + V+TGGEPL L +L K+G +I +ET+G Sbjct: 73 GLHPPTHVGEIVE----NALKYSKTIVITGGEPLTWDMTTLTDSLKKQGCQIHIETSGAY 128 Query: 123 EPPQGIDWICVSPKAGC---DLKIKGGQELKLVF---PQVNVSPENYIGF-DFERFSLQP 175 DWIC+SPK ELK++ + E + LQP Sbjct: 129 PLTGIWDWICLSPKKIKLPEPEIYPVANELKVIIFNKHDFKFAEEQAAQVGEHCILYLQP 188 Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E+ L + Y +NPKW++S+QTHK++ I Sbjct: 189 -EWSNREKMIPLIVDYVMRNPKWKVSLQTHKYLNI 222 >gi|78780168|ref|YP_398280.1| putative organic radical activating protein [Prochlorococcus marinus str. MIT 9312] gi|78713667|gb|ABB50844.1| organic radical activating enzyme-like protein [Prochlorococcus marinus str. MIT 9312] Length = 225 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 107/242 (44%), Gaps = 48/242 (19%) Query: 1 MKL---YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI 57 MK+ + E F +LQGEG HAG+ A F R +GC C +CDT Sbjct: 1 MKMTNFLPLVEQFHSLQGEGYHAGKSAFFVRLAGC-----------EVGCSWCDTKHSWD 49 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN-------KR 110 + +Y + +I+ I E+ +CV+TGGEPL +A+ + Sbjct: 50 E----NKYPSVSIEKIIDRIKIAREQGASFCVITGGEPLQHNLDKFCKAIKQMKMGKEQN 105 Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQ-------VNVSP 160 +I +ET+G DWI +SPK K +K E+K++ + + + Sbjct: 106 SMKIHIETSGVNSISGSYDWITLSPKRHSPPKNYFLKNCNEIKIIINEKEDIEFAIQIKK 165 Query: 161 ENYIGFDFER-----------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209 E ++F + F LQP ++ +LAI + NP W+LS+QTHK++ Sbjct: 166 EILKQYEFSKIEDSLKKEDKIFYLQPA--WNNKDGFSLAIDFVKNNPDWKLSLQTHKYLK 223 Query: 210 IR 211 I+ Sbjct: 224 IK 225 >gi|325287093|ref|YP_004262883.1| Radical SAM domain-containing protein [Cellulophaga lytica DSM 7489] gi|324322547|gb|ADY30012.1| Radical SAM domain protein [Cellulophaga lytica DSM 7489] Length = 215 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 58/216 (26%), Positives = 95/216 (43%), Gaps = 27/216 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 ++ + E F T+QGEG H G A F R GC++ C +CD + Sbjct: 19 EMLPLMEEFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCDVK----ESWN 63 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + + ++ K V+TGGEPL PL +AL + + +ET+G Sbjct: 64 AATHPPTTIDAIVN----NAAKYSNTIVVTGGEPLTWNMAPLTEALKAKNLQTHIETSGA 119 Query: 122 IEPPQGIDWICVSPKAGC---DLKIKGGQELKLVFPQVN---VSPENYIGFDFERF-SLQ 174 DWIC+SPK + ELK++ N + E + + LQ Sbjct: 120 YTLTGIWDWICLSPKKNKLPQGIIYDKADELKMIIYNKNDFKFAEEQAAKVNKDCILYLQ 179 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P + ++ T L + + +NP+W++S+QTHK++ I Sbjct: 180 P-EWSVKDKMTPLIVDFVMKNPQWKVSLQTHKYLNI 214 >gi|163800817|ref|ZP_02194717.1| aconitate hydratase [Vibrio sp. AND4] gi|159175166|gb|EDP59963.1| aconitate hydratase [Vibrio sp. AND4] Length = 216 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 60/230 (26%), Positives = 87/230 (37%), Gaps = 43/230 (18%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR---- 64 +F T+QGEG G AVF R C + C +CDT + R Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQECPV-----------GCSWCDTKQTWYAKEEDQRQIGD 49 Query: 65 ----------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114 + D++ E G ++ V+TGGEP + L A + + Sbjct: 50 ILVKTEDSPTWCFASAQDIVVEYKKQGFN-AKHIVITGGEPCIYDLRELTAAFEEMDCQC 108 Query: 115 AVETNGTIEPPQG-IDWICVSPKAGCDLKIK-------GGQELKL------VFPQVNVSP 160 +ET+GT E W+ VSPK K+ E+K Q++V Sbjct: 109 QIETSGTSEVVASESTWVTVSPKVAMKGKLPILKSALGRANEIKHPVGTQKDIDQLDVLL 168 Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + +LQP+ T L I C WRLSVQTHK++ I Sbjct: 169 ASAEVGESTVIALQPISQK--PRATQLCIDTCIAR-NWRLSVQTHKYLSI 215 >gi|156974667|ref|YP_001445574.1| hypothetical protein VIBHAR_02385 [Vibrio harveyi ATCC BAA-1116] gi|156526261|gb|ABU71347.1| hypothetical protein VIBHAR_02385 [Vibrio harveyi ATCC BAA-1116] Length = 216 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 87/230 (37%), Gaps = 43/230 (18%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR---- 64 +F T+QGEG G AVF R C + C +CDT K R Sbjct: 1 MFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWYAEEKDQRQIGD 49 Query: 65 ----------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114 + D++ E G ++ V+TGGEP + L A + + Sbjct: 50 ILVKTEDSPTWCFASAEDIVAEYKKQGFN-AKHVVITGGEPCIYDLRALTAAFEEMDCQC 108 Query: 115 AVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL------VFPQVNVSP 160 +ET+GT E W+ VSPK K+ E+K Q++V Sbjct: 109 QIETSGTSEVVTSESTWVTVSPKVAMKGKLPVLKSALERANEIKHPVGTQKDIDQLDVLL 168 Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + +LQP+ T L I C WRLSVQTHK++ I Sbjct: 169 ASAEIGEKTVIALQPISQK--PRATQLCIDTCVAR-NWRLSVQTHKYLSI 215 >gi|255534291|ref|YP_003094662.1| Queuosine Biosynthesis QueE Radical SAM [Flavobacteriaceae bacterium 3519-10] gi|255340487|gb|ACU06600.1| Queuosine Biosynthesis QueE Radical SAM [Flavobacteriaceae bacterium 3519-10] Length = 210 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 64/216 (29%), Positives = 91/216 (42%), Gaps = 27/216 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 ++ + E F TLQGEG H G+ A F R GC++ C +CD T Sbjct: 14 EMLPVMEHFYTLQGEGAHTGKAAYFIRLGGCDV-----------GCHWCDVKESW-DPTL 61 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + Q+A+ T K + VLTGGEPL+ L L + G I +ET+G Sbjct: 62 HPLMSAVQIAE-------TAAKHCKTIVLTGGEPLMWNLEILTSRLKELGCTIHIETSGA 114 Query: 122 IEPPQGIDWICVSPKA---GCDLKIKGGQELKLVF---PQVNVSPENYIGF-DFERFSLQ 174 +DWI +SPK D ELK++ + + E R LQ Sbjct: 115 YPMSGHLDWITLSPKKTGLPKDQIYAKAHELKVIVFNNNDLKFAAEQAAKVSPTCRLYLQ 174 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + EE + NP+W+ SVQTHK++ I Sbjct: 175 -SEWSKREEIYPKITDFILANPEWQASVQTHKYLNI 209 >gi|123967114|ref|YP_001012195.1| putative organic radical activating protein [Prochlorococcus marinus str. MIT 9515] gi|123201480|gb|ABM73088.1| possible organic radical activating enzyme [Prochlorococcus marinus str. MIT 9515] Length = 223 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 45/236 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F +LQGEG H G+ A F R +GCN+ C +CDT + Sbjct: 5 LPLVEKFHSLQGEGFHTGQSAFFIRLAGCNV-----------GCPWCDTKHSWDK----E 49 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-------GFEIAV 116 ++ + + ++I E ++ + V+TGGEPL L QA+N+ +I + Sbjct: 50 KFPLISIQEIINEIKRARKQGASFLVITGGEPLHHNLDNLCQAINEETSTENQSPIKIHI 109 Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVF-PQVNVSPENYIGFDF---- 168 ET+G DWI +SPK K +K ELK++ Q ++ I + Sbjct: 110 ETSGVSNLSGSFDWITLSPKRHQPPKTYFLKNCNELKIIINDQKDIDFAIDIKQEIMNKY 169 Query: 169 -------------ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +++ LQP ++ +L I + NP+W LS+QTHK++ I+ Sbjct: 170 QNSSSTKNFYKLDKKYYLQPAWQ--NDDGFSLTIDFIKNNPEWNLSLQTHKYLKIK 223 >gi|300775377|ref|ZP_07085239.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Chryseobacterium gleum ATCC 35910] gi|300506117|gb|EFK37253.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Chryseobacterium gleum ATCC 35910] Length = 209 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 59/216 (27%), Positives = 92/216 (42%), Gaps = 27/216 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 K+ + E F TLQGEG H G+ A F R GC++ C +CD Sbjct: 13 KMLPVMEHFYTLQGEGAHTGKAAYFIRLGGCDV-----------GCHWCDVKESW-DPEL 60 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 N +++A+ T + + VLTGGEPL+ L L + G I +ET+G Sbjct: 61 HPLMNAEEIAE-------TAARHCKTIVLTGGEPLMWNLDILTSKLKELGCTIHIETSGA 113 Query: 122 IEPPQGIDWICVSPKAGCDLK---IKGGQELKLV---FPQVNVSPENYIGF-DFERFSLQ 174 +DWI +SPK K + ELK++ + E + + LQ Sbjct: 114 YPMSGHLDWITLSPKKTGLPKEEIYQKANELKVIIFNHHDFTFAQEQAAKVSENCKLYLQ 173 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + ++P+W+ SVQTHK++ I Sbjct: 174 -SEWSKRNDMYPKITDFILEHPEWQASVQTHKYLNI 208 >gi|255745752|ref|ZP_05419700.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholera CIRS 101] gi|262158970|ref|ZP_06030082.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae INDRE 91/1] gi|255736827|gb|EET92224.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholera CIRS 101] gi|262029155|gb|EEY47807.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae INDRE 91/1] Length = 216 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 58/229 (25%), Positives = 87/229 (37%), Gaps = 41/229 (17%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ---------- 58 +F +QGEG G AVF R GC + C +CDT Sbjct: 1 MFEIIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSDQTSFSQ 49 Query: 59 ---GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115 T A + +++ + ++ V+TGGEP + L QA G Sbjct: 50 ILLKTNDAPTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQ 109 Query: 116 VETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSPENYIGF 166 +ET+GT E W+ VSPK K+ E+K V + ++ + + Sbjct: 110 IETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLA 169 Query: 167 DFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + +LQP+ T L I C WRLS+QTHK++ I Sbjct: 170 RAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215 >gi|313676966|ref|YP_004054962.1| radical sam domain protein [Marivirga tractuosa DSM 4126] gi|312943664|gb|ADR22854.1| Radical SAM domain protein [Marivirga tractuosa DSM 4126] Length = 207 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 61/214 (28%), Positives = 102/214 (47%), Gaps = 26/214 (12%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F T+QGEG H+G+ A F R GC++ C +CD Sbjct: 12 LPLMESFYTIQGEGFHSGKAAYFIRLGGCDV-----------GCVWCDVK----DSWDAD 56 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 ++ + ++ D++++ + + E R V+TGGEP + L + L ++GF + VET+G Sbjct: 57 KWPLKKIDDIVDDAY---QYESRLAVITGGEPFMYDMHGLTKRLLQKGFHVNVETSGAHP 113 Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVSPENYIGFD---FERFSLQPM 176 +DW+C+SP KA + ELK ++F + + + LQP Sbjct: 114 FTGMVDWVCLSPKKFKAPLEHWYDRADELKIIIFNKSDFKWAEEHAEKVGSDCKLMLQP- 172 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + EE L + Y +NP W +S+QTHK++ I Sbjct: 173 EWSKREEMMPLIVEYVKENPNWGISLQTHKYLQI 206 >gi|166365320|ref|YP_001657593.1| hypothetical protein MAE_25790 [Microcystis aeruginosa NIES-843] gi|166087693|dbj|BAG02401.1| hypothetical protein MAE_25790 [Microcystis aeruginosa NIES-843] Length = 205 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 62/218 (28%), Positives = 93/218 (42%), Gaps = 31/218 (14%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 Y + E F ++QGEG G A F R GC+++ C +CD + Sbjct: 10 TYPVVETFHSVQGEGFWTGSNAFFLRLGGCDVY-----------CPWCDQK----ESWNA 54 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY L +L+E + V+TGGEPL+ PL + L +G + +ET+G Sbjct: 55 HRYPQQSLRELVE---MAKGANPAMVVITGGEPLMHNLDPLTKELKNQGLRVHLETSGAH 111 Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF------SL 173 DW+ SP K ELK+V ++ + L Sbjct: 112 PFTGVFDWVTFSPKTYKMPDPSIYARVNELKIVVAHP--EDLDWASMQESKLSEGVIKYL 169 Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 QP E+ L +Y ++P+WRLS+QTHKF+G+R Sbjct: 170 QPEWNT--AESKELVFNYVLRHPQWRLSLQTHKFLGVR 205 >gi|228473183|ref|ZP_04057938.1| radical SAM domain protein [Capnocytophaga gingivalis ATCC 33624] gi|228275333|gb|EEK14125.1| radical SAM domain protein [Capnocytophaga gingivalis ATCC 33624] Length = 200 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 27/216 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + + E F T+QGEG + G A F R +GC++ C +CD + Sbjct: 4 TILPLMEDFYTIQGEGFYRGTAAYFIRLAGCDV-----------GCHWCDVKESW-DASV 51 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 R ++++A + ++TGGEPL+ PL + L +G +ET+G Sbjct: 52 HPRVPIEEIAQR-------ALAHSKTIIITGGEPLMYNLQPLTELLKSKGARTHIETSGA 104 Query: 122 IEPPQGIDWICVSPKAG---CDLKIKGGQELKLV----FPQVNVSPENYIGFDFERFSLQ 174 DWIC+SPK + ELK++ + + + LQ Sbjct: 105 HPLTGVWDWICLSPKKNKRPLPEVHQRASELKMIIYNHHDFLFAEEMSALTQPDCIRYLQ 164 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P + E L + Y +NP+W++S+Q HK++ I Sbjct: 165 P-EWSRRERMVPLIVDYVMENPQWKISLQMHKYLDI 199 >gi|159030634|emb|CAO88302.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 224 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 62/218 (28%), Positives = 94/218 (43%), Gaps = 31/218 (14%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 Y + E F ++QGEG G A F R GC+++ C +CD + Sbjct: 29 TYPVVETFHSVQGEGFWTGSNAFFLRLGGCDVY-----------CPWCDQK----ESWNA 73 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 RY L +L+E + + V+TGGEPL+ PL + +G + +ET+G Sbjct: 74 HRYPQKSLGELVE---MAKDANPAMVVITGGEPLMHNLAPLTEEFKNQGLRVHLETSGAH 130 Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF------SL 173 DW+ SP K ELK+V N ++ + L Sbjct: 131 PFTGVFDWVTFSPKTYKMPDPSIYARVNELKIVV--ANPEDLDWAAMQESKLSEGVIKYL 188 Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 QP E+ L +Y ++P+WRLS+QTHKF+G+R Sbjct: 189 QPEWNT--AESKELVFNYVLRHPQWRLSLQTHKFLGVR 224 >gi|298207940|ref|YP_003716119.1| hypothetical protein CA2559_06800 [Croceibacter atlanticus HTCC2559] gi|83850581|gb|EAP88449.1| hypothetical protein CA2559_06800 [Croceibacter atlanticus HTCC2559] Length = 210 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 27/216 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 K+ + E F T+QGEG H G A F R GC++ C +CD + Sbjct: 14 KMLPLMEEFYTIQGEGYHKGTAAYFIRIGGCDV-----------GCHWCDVK----ESWD 58 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 ++ ++ E K + V+TGGEPL L Q L G + +ET+G Sbjct: 59 AEKHPPTATERIVSE----AVKYSKTIVVTGGEPLTWDMTLLTQMLKAEGAQTHIETSGA 114 Query: 122 IEPPQGIDWICVSPKA---GCDLKIKGGQELKLVF---PQVNVSPENYIGFDFERF-SLQ 174 DWIC+SPK + ELK++ + + E + + LQ Sbjct: 115 YTLTGKWDWICLSPKKLKLPTKEVYEKANELKVIIFNKHDLKFAEEQAAKVNKDCILYLQ 174 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P + ++ L + + NP+W++S+QTHK++ I Sbjct: 175 P-EWSVRDKVVPLIVDFVMANPQWKVSLQTHKYLNI 209 >gi|170076908|ref|YP_001733546.1| radical SAM domain-containing protein [Synechococcus sp. PCC 7002] gi|169884577|gb|ACA98290.1| Radical SAM domain protein [Synechococcus sp. PCC 7002] Length = 218 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 64/217 (29%), Positives = 97/217 (44%), Gaps = 29/217 (13%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 Y I E F ++QGEG G A F R +GC++ C +CDT + + Sbjct: 23 TYPIVETFHSIQGEGFWCGTAAFFIRLAGCDV-----------GCPWCDTK-ISWNPKRH 70 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + +V QL + ++ + + V+TGGEPL+ PL L + G + +ET+G Sbjct: 71 PQVSVGQLKEQVQ------TAQPKIIVITGGEPLMHDLYPLTTGLKETGIPLHLETSGAH 124 Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQV-----NVSPENYIGFDFERFSLQ 174 DW+ +SP KA ELK+V Q S I + + LQ Sbjct: 125 PLNGHFDWLTLSPKPFKAPLPEIYDHVSELKVVIDQATDFQWAESQVQKIAANIPK-YLQ 183 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 P + +L Y +P+WRL +QTHKF+G+R Sbjct: 184 P--QWENPASQSLIFDYILAHPEWRLGLQTHKFLGVR 218 >gi|124024647|ref|YP_001018954.1| organic radical activating protein [Prochlorococcus marinus str. MIT 9303] gi|123964933|gb|ABM79689.1| possible organic radical activating enzyme [Prochlorococcus marinus str. MIT 9303] Length = 226 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 64/239 (26%), Positives = 93/239 (38%), Gaps = 48/239 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F ++QGEG H GR A F R +GC++ C +CDT Sbjct: 5 LPVVETFHSIQGEGAHVGRSAFFIRLAGCDV-----------GCSWCDTKHSW----NSR 49 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-------GFEIAV 116 + + L E + + VLTGGEPL PL +AL++ I + Sbjct: 50 NHPQIAVEQLAVETATAAKNGAAFVVLTGGEPLQHNIAPLCEALHRATETNPDGPLPIHL 109 Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQ----------VNVSPENY 163 ET+G + WI +SPK + + ELK+V + + Sbjct: 110 ETSGVNQLSGVPTWITLSPKRHAPPRTDLLAACHELKVVVHERGDLNFAESMAQAALAAR 169 Query: 164 IGFDFER-----------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 D + LQP G LA + +P WRLS+QTHK++GIR Sbjct: 170 KNDDASQSRLSNASKEPLLFLQP--GWATTTGQQLAFEHVQSHPHWRLSMQTHKWLGIR 226 >gi|77360060|ref|YP_339635.1| queC protein [Pseudoalteromonas haloplanktis TAC125] gi|76874971|emb|CAI86192.1| queC protein [Pseudoalteromonas haloplanktis TAC125] Length = 215 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 60/228 (26%), Positives = 90/228 (39%), Gaps = 40/228 (17%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---------QG 59 +F T+QGE + G ++F R GC + C +CDT Sbjct: 1 MFETIQGEASYTGTPSIFLRLQGCPV-----------GCSWCDTKQTWDVDNVYKVSLDE 49 Query: 60 TKGGRYNVDQLADL----IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115 T + + D A I + + ++ V+TGGEP + P+ L++ GF Sbjct: 50 TVEKKADSDHWAQASAANILALFQSRGYTAKHVVITGGEPCMYDLNPVCNLLHENGFSTQ 109 Query: 116 VETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQVNVSPENYIGF- 166 +ET+GT E W+ VSPK ++ E+K E F Sbjct: 110 IETSGTFEILAPAQTWVTVSPKINMRGGFEVLTTAMQRANEIKHPVAMQKHVEELEELFV 169 Query: 167 ----DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + LQP+ E T LAI C WRLS+Q HK++GI Sbjct: 170 KTGVNPKLVYLQPISQK--ESATKLAIKTCIAK-NWRLSIQVHKYLGI 214 >gi|150026231|ref|YP_001297057.1| hypothetical protein FP2200 [Flavobacterium psychrophilum JIP02/86] gi|149772772|emb|CAL44256.1| Protein of unknown function YgcF [Flavobacterium psychrophilum JIP02/86] Length = 210 Score = 207 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 59/215 (27%), Positives = 85/215 (39%), Gaps = 25/215 (11%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 ++ + E F T+QGEG H G A F R GC++ C +CD Sbjct: 14 EMLPLMEEFYTIQGEGYHTGTAAYFIRIGGCDV-----------GCHWCDVKESWNAALH 62 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 D+I E K + V+TGGEPL L Q L ++ +ET+G Sbjct: 63 PPTKT-----DVIVE---NATKYAKTIVVTGGEPLTWDMTVLTQRLKAENLQVHIETSGA 114 Query: 122 IEPPQGIDWICVSPKAG---CDLKIKGGQELKLVF---PQVNVSPENYIGFDFERFSLQP 175 DW C+SPK + ELK++ + E + Sbjct: 115 YPVTGAWDWFCLSPKKNKLPVAEAYEIAHELKVIIYNKHDFIFAEEQAAKVNKNAILFLQ 174 Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + EE T + Y NPKWR+S+QTHK++ I Sbjct: 175 SEWSKKEEMTPFIVDYVMNNPKWRVSLQTHKYLNI 209 >gi|86133041|ref|ZP_01051623.1| radical SAM superfamily protein [Polaribacter sp. MED152] gi|85819904|gb|EAQ41051.1| radical SAM superfamily protein [Polaribacter sp. MED152] Length = 210 Score = 207 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 58/215 (26%), Positives = 92/215 (42%), Gaps = 27/215 (12%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + E F T+QGEG H G A F R GC++ C +CD Sbjct: 15 MLPLMEEFYTIQGEGSHTGTAAYFIRVGGCDV-----------GCHWCDVKESWNADLHP 63 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 D + + ++ K V+TGGEPL+ + + L K + +ET+G Sbjct: 64 PTM-ADSIIENVK-------KYTDTVVITGGEPLMWSMDYITELLQKNNIKTHIETSGAY 115 Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQV---NVSPENYIGFDFE-RFSLQP 175 DW C+SPK + ELK++ + + E + + LQP Sbjct: 116 SFSGKWDWFCLSPKKTKLPLTENYREADELKMIIHNKSDFDFAEEQATKVGKKCQLFLQP 175 Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E+ T L + Y +NPKW++S+QTHK++ I Sbjct: 176 -EWSKKEKMTELIVDYVMKNPKWKVSLQTHKYLNI 209 >gi|319952143|ref|YP_004163410.1| radical sam domain protein [Cellulophaga algicola DSM 14237] gi|319420803|gb|ADV47912.1| Radical SAM domain protein [Cellulophaga algicola DSM 14237] Length = 215 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 60/216 (27%), Positives = 90/216 (41%), Gaps = 27/216 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 ++ + E F T+QGEG H G A F R GC++ C +CD T Sbjct: 19 EMLPLMEEFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCDVKESWNADTH 67 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 +++ K V+TGGEPL PL + L R + +ET+G Sbjct: 68 PPTATETIISN--------AAKYSDTIVITGGEPLTWDMGPLTKGLKARNLQTHIETSGA 119 Query: 122 IEPPQGIDWICVSPKAGCDL---KIKGGQELKLVF---PQVNVSPENYIGFDFERF-SLQ 174 DWIC+SPK ELK++ + E + E LQ Sbjct: 120 YPLTGVWDWICLSPKKNKLPEGRIYDEAHELKMIIFNKHDFIFAEEQAAKTNKECILYLQ 179 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P + ++ L + Y +NPKW++S+QTHK++ I Sbjct: 180 P-EWSVRDKMVPLIVDYVMKNPKWKVSLQTHKYLNI 214 >gi|33866959|ref|NP_898518.1| organic radical activating protein [Synechococcus sp. WH 8102] gi|33639560|emb|CAE08944.1| possible organic radical activating enzyme [Synechococcus sp. WH 8102] Length = 206 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 69/217 (31%), Positives = 100/217 (46%), Gaps = 25/217 (11%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + E F +LQGEG H+GR A F R +GCN+ C +CDT T Sbjct: 7 TLPVVETFHSLQGEGHHSGRSAFFIRLAGCNV-----------GCPWCDTKHSWPVNTHP 55 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGT 121 R ++ LA +E+ G + V+TGGEPL L AL + + +ET+G Sbjct: 56 QR-SLRALAADVEQAERNG---AAFTVITGGEPLQHNLDGLASALREASSHPLHLETSGV 111 Query: 122 IEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVN--VSPENYIGFDFER--FSLQ 174 DWI +SPK + + ELK+V + + E+ ++ LQ Sbjct: 112 DGLSGDPDWITLSPKPHRPPRQELLSHCDELKVVIHTADDLLFAESMAAAVSKQTVLLLQ 171 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 P G E LAI + P+WRLS+QTHK++G+R Sbjct: 172 P--GWDSSEGQRLAIDHVQNQPRWRLSLQTHKWLGVR 206 >gi|326336650|ref|ZP_08202818.1| GntS protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691120|gb|EGD33091.1| GntS protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 205 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 27/216 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 ++ + E F T+QGEG + G A F R +GCN+ C +CD + Sbjct: 9 EVLPLMESFYTIQGEGFYKGTAAYFIRLAGCNV-----------GCHWCDVK----ESWD 53 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + + + ++EE K + ++TGGEPL+ PL + L +G +ET+G Sbjct: 54 ASIHTLVPIKTMVEE----AFKFSKIAIITGGEPLMYNLDPLTELLRSKGIRTHIETSGA 109 Query: 122 IEPPQGIDWICVSPKAG---CDLKIKGGQELK-LVFPQVNVSPENYIGFDFER---FSLQ 174 DWIC+SPK + ELK +++ Q + + LQ Sbjct: 110 HPLTGVWDWICLSPKKNKRPLPPIHQKANELKMIIYNQHDFLFAEEMSVLTRTDCIRYLQ 169 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P + E+ + Y ++P+W++S+Q HK++ I Sbjct: 170 P-EWSRREKMIPKMVEYVMEHPQWKISLQMHKYLNI 204 >gi|78214102|ref|YP_382881.1| organic radical activating protein [Synechococcus sp. CC9605] gi|78198561|gb|ABB36326.1| possible organic radical activating enzyme [Synechococcus sp. CC9605] Length = 205 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 72/217 (33%), Positives = 101/217 (46%), Gaps = 27/217 (12%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F +LQGEG HAGR A F R +GC + C +CDT Sbjct: 7 LPVVETFHSLQGEGHHAGRSAFFIRLAGC-----------TVGCPWCDTKHSW-PSKGHP 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTI 122 +D LAD + + GE + V+TGGEPL PL QAL+ R G + +ET+G Sbjct: 55 EQPIDALADAAQ---MAGEVGAGFVVITGGEPLHHDLQPLTQALDARCGLPLHLETSGVD 111 Query: 123 EPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVN-----VSPENYIGFDFERFSLQ 174 DWI +SPK + ++ ELK+V + + D ER LQ Sbjct: 112 PISGRFDWITLSPKRHRPPRQELLQACHELKVVVHGPEDISFAAAMASQCENDTERL-LQ 170 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 P G LA+ + Q+ +WRLS+Q+HK++ IR Sbjct: 171 P--GWECSIGEALAVEHVRQHSRWRLSMQSHKWLRIR 205 >gi|332042673|gb|EGI78873.1| Radical SAM domain protein [Lacinutrix algicola 5H-3-7-4] Length = 209 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 27/216 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 K+ + E F T+QGEG H G A F R GC++ C +CD + Sbjct: 13 KMLPLMEEFYTIQGEGFHKGTAAYFVRIGGCDV-----------GCHWCDVK----ESWI 57 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + + ++ ++ + V+TGGEPL L + L G I +ET+G Sbjct: 58 AQLHPPTETEKIVA----NAKQYSKTIVVTGGEPLTWDMTELTKQLKAEGMNIHIETSGA 113 Query: 122 IEPPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQVN---VSPENYIGFDFERF-SLQ 174 E DWIC+SPK ELK + + + E + + LQ Sbjct: 114 YELTGEWDWICLSPKKMKLPTQGVYDKANELKCIIYNKDDFRFAEEQAEKVNGDCILYLQ 173 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P + ++ + + Y +NPKW++S+QTHK++ I Sbjct: 174 P-EWSKRDKVVPMIVDYVMENPKWKVSLQTHKYLNI 208 >gi|149369786|ref|ZP_01889637.1| hypothetical protein SCB49_01894 [unidentified eubacterium SCB49] gi|149356277|gb|EDM44833.1| hypothetical protein SCB49_01894 [unidentified eubacterium SCB49] Length = 209 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 59/214 (27%), Positives = 92/214 (42%), Gaps = 27/214 (12%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F T+QGEG + G A F R GC++ C +CD Sbjct: 15 LPLMEEFYTIQGEGYYKGTAAYFIRIGGCDV-----------GCHWCDVKESWNPDIHPP 63 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 +++ +AD K + V+TGGEPL+ PL + L +G +ET+G Sbjct: 64 T-SIETIAD-------NAAKYSKTIVITGGEPLMWDMNPLTELLKSKGVNTHIETSGAYS 115 Query: 124 PPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQVN---VSPENYIGFDFE-RFSLQPM 176 DWIC+SPK ELK++ + + E + + + LQP Sbjct: 116 LSGTWDWICLSPKKMKLPTPEVYAAAHELKMIIYNKDDFRFAEEQASKVNADCKLFLQP- 174 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + ++ + Y QNPKW +S+QTHK++ I Sbjct: 175 EWSKRDKMVPEIVDYVMQNPKWVVSLQTHKYLNI 208 >gi|254506224|ref|ZP_05118367.1| organic radical activating enzyme [Vibrio parahaemolyticus 16] gi|219550704|gb|EED27686.1| organic radical activating enzyme [Vibrio parahaemolyticus 16] Length = 216 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 60/230 (26%), Positives = 93/230 (40%), Gaps = 43/230 (18%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68 +F T+QGEG G +VF R C + C +CDT T + Sbjct: 1 MFETIQGEGVFTGVPSVFVRLQECPV-----------GCAWCDTKQTW-DATPQDETSFS 48 Query: 69 QL--------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114 ++ A I +++ E ++ V+TGGEP + PL +A G + Sbjct: 49 EIMKKTQDSPTWCQSSAQGIVDEYRNQEYTAKHIVITGGEPCIYDLTPLTEAFEAIGCQC 108 Query: 115 AVETNGTIEPPQ-GIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSPENYIG 165 +ET+GT E W+ VSPK K+ E+K V Q ++ + + Sbjct: 109 QIETSGTSEVRATDNTWVTVSPKVAMKGKLPVLDSALVRANEIKHPVATQKDIDQLDELL 168 Query: 166 FDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + +LQP+ T L I C + WRLS+QTHK++ I Sbjct: 169 ERAKVPETTVVALQPISQK--PRATQLCIDVCVKR-NWRLSIQTHKYLSI 215 >gi|307150184|ref|YP_003885568.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7822] gi|306980412|gb|ADN12293.1| Radical SAM domain protein [Cyanothece sp. PCC 7822] Length = 205 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 57/218 (26%), Positives = 93/218 (42%), Gaps = 31/218 (14%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 Y I E F ++QGEG G A F R GC+++ C +CD + Sbjct: 10 TYPIVETFHSIQGEGAWTGVSAFFIRLGGCDVY-----------CPWCDQK----ESWNP 54 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R+ + +L+E + V+TGGEPL+ +PL + L G + +ET+G+ Sbjct: 55 KRHPHQSVENLLESAKMAN---PAIVVITGGEPLMHDLIPLTRELQLLGLRVHLETSGSH 111 Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF------SL 173 W+ SPK + + ELK+V N ++ + L Sbjct: 112 PFSGNFHWVTFSPKPYKRPHESIYEQVNELKVVI--ANEEDLHWAQRQAAKLPSTVVKYL 169 Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 QP + L + ++P+WR+S+QTHKF+ +R Sbjct: 170 QPEWNT--PNSGALIFEFVLKHPQWRMSLQTHKFLNVR 205 >gi|88809463|ref|ZP_01124971.1| possible organic radical activating enzyme [Synechococcus sp. WH 7805] gi|88786682|gb|EAR17841.1| possible organic radical activating enzyme [Synechococcus sp. WH 7805] Length = 208 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 63/215 (29%), Positives = 96/215 (44%), Gaps = 24/215 (11%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F +LQGEG HAGR A F R +GC C +CDT Sbjct: 11 LPVVETFHSLQGEGLHAGRSAFFIRLAGC-----------RVGCSWCDTKHSW----PAD 55 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-RGFEIAVETNGTI 122 + + + L E + V+TGGEPL L QAL R + +ET+G Sbjct: 56 SHPLRPIDSLATEAAAAASDGAAFVVITGGEPLHHNLDALAQALRSLRSLPLHLETSGVD 115 Query: 123 EPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQ-VNVSPENYIGFDFER--FSLQPM 176 DWI +SPK + ++ ELK+V + ++ + + + + LQP Sbjct: 116 PLSGDPDWITLSPKRHAPPRAELLRRCHELKVVVHEPADLLFADVVAAQAPQATWLLQP- 174 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 G E LA+ ++ +WRLS+Q+HK++G+R Sbjct: 175 -GWESAEGQQLALDAARRDGRWRLSLQSHKWLGVR 208 >gi|313157136|gb|EFR56566.1| radical SAM domain protein [Alistipes sp. HGB5] Length = 211 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 64/218 (29%), Positives = 100/218 (45%), Gaps = 30/218 (13%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 +L + E F T+QGEG HAG+ A F R GC++ CR+CD + Sbjct: 14 RLLPLVEDFYTIQGEGFHAGKPAYFIRLGGCDV-----------GCRWCDAKYTW----N 58 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 Y + +I+ + V+TGGEPLL L + L+++G +I +ET+GT Sbjct: 59 PKLYPPTDVRTVIDRALAC---PAQAIVITGGEPLLYPLGVLTETLHEKGLQIFLETSGT 115 Query: 122 IEPPQGIDWICVSPK---AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER------FS 172 DW+C+SPK D ++ ELK++ + S + + R Sbjct: 116 HPFSGYFDWVCLSPKRQQPPLDEALERAHELKVIVE--SESDFEWAERNAARVRPECMLY 173 Query: 173 LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP + E + Y +PKW +S+QTHK++ I Sbjct: 174 LQP-EWSVAERVMPAMVEYAKAHPKWNISIQTHKYMHI 210 >gi|116074183|ref|ZP_01471445.1| possible organic radical activating enzyme [Synechococcus sp. RS9916] gi|116069488|gb|EAU75240.1| possible organic radical activating enzyme [Synechococcus sp. RS9916] Length = 202 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 67/215 (31%), Positives = 99/215 (46%), Gaps = 24/215 (11%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F +LQGEG HAGR A F R +GCN+ C +CDT Q + Sbjct: 5 LPVVETFHSLQGEGLHAGRSAFFIRLAGCNV-----------GCSWCDTKHSWPQSS--- 50 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTI 122 + + + L E G+ + V+TGGEPL L A+ I +ET+G Sbjct: 51 -HPLQSVDSLAAEAAAAGQAGAAFVVITGGEPLHHNLDGLTGAIRTACTLPIHIETSGVD 109 Query: 123 EPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVN---VSPENYIGFDFERFSLQPM 176 DWI +SPK + ++ ELK+V + N + + LQP Sbjct: 110 PLSGTPDWITLSPKRHSPPRAEVLRACHELKVVVHEPNDLLFAEVAASQAPQASWLLQP- 168 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 G E+ LAI+Y +P+WRLS+Q+HK++ +R Sbjct: 169 -GWQSEKGQQLAINYAQHHPRWRLSLQSHKWLQVR 202 >gi|172035924|ref|YP_001802425.1| hypothetical protein cce_1008 [Cyanothece sp. ATCC 51142] gi|171697378|gb|ACB50359.1| hypothetical protein cce_1008 [Cyanothece sp. ATCC 51142] Length = 213 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 91/218 (41%), Gaps = 27/218 (12%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + Y I EIF +LQGEG G A F R +GC++ C +CD + Sbjct: 16 LMTYPIVEIFHSLQGEGTWTGMSAFFIRLAGCDV-----------HCPWCDQK----ESW 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 Y + L V+TGGEPL+ PL +AL K G + +ET+G Sbjct: 61 TSKIYPQQSIKTL---AEAAKAANPAMVVITGGEPLMYDLFPLTKALKKLGLRVHLETSG 117 Query: 121 TIEPPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVNV---SPENYIGFDFERF-SL 173 DW+ +SP K + ELK+V + E + L Sbjct: 118 AYPFSGQFDWVTLSPKPFKVPHESIYPQVNELKVVITNQEDFHWAEEQEKKVPPQALKYL 177 Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 QP E+ +L Y + P+WR+S+Q HKF+G+R Sbjct: 178 QPE--WNYPESQSLIFDYIRKAPQWRMSLQIHKFLGVR 213 >gi|167751865|ref|ZP_02423992.1| hypothetical protein ALIPUT_00107 [Alistipes putredinis DSM 17216] gi|167660106|gb|EDS04236.1| hypothetical protein ALIPUT_00107 [Alistipes putredinis DSM 17216] Length = 211 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 62/216 (28%), Positives = 97/216 (44%), Gaps = 26/216 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + + E F T+QGEG H G+ A F R GC++ CR+CD + Sbjct: 14 RKLPLVEDFYTIQGEGFHTGKPAYFIRLGGCDV-----------GCRWCDAKYTW----N 58 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 Y +++++ + + V+TGGEPLL PL AL G +I +ET+G+ Sbjct: 59 PKLYPPTDISEVVRRATSC---QAQAIVITGGEPLLYPLGPLTSALKGHGLKIFLETSGS 115 Query: 122 IEPPQGIDWICVSPK---AGCDLKIKGGQELKLVFPQ---VNVSPENYIGFDFE-RFSLQ 174 DW+C+SPK ELK++ + + + N E + LQ Sbjct: 116 HPFSGYFDWVCLSPKRQQPPLPEAFWRAHELKVIVEREADLQWAERNAEQVGRECKLFLQ 175 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P + EE L + Y +P W +S+QTHK++ I Sbjct: 176 P-EWSVSEEIMPLLVEYVKAHPAWNISIQTHKYMHI 210 >gi|284929204|ref|YP_003421726.1| organic radical activating enzyme [cyanobacterium UCYN-A] gi|284809648|gb|ADB95345.1| organic radical activating enzyme [cyanobacterium UCYN-A] Length = 208 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 61/218 (27%), Positives = 96/218 (44%), Gaps = 27/218 (12%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + Y I E F ++QGEG G A F R +GCN+ C +CD T Sbjct: 11 LTTYPIAETFHSIQGEGAWTGVSAFFIRLAGCNV-----------GCPWCDQKESWTDKT 59 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 +Y+ + L+ ++ V+TGGEPL+ PL L K G +I +ET+G Sbjct: 60 -FPKYSSEMLSTKAQQA------NASIVVITGGEPLMYNLFPLTDKLRKLGMKIHLETSG 112 Query: 121 TIEPPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVNV---SPENYIGFDFERF-SL 173 + +W+ SP KA + ELK++ + + + + L Sbjct: 113 SYPFSGNFNWVTFSPKPFKAPHESIYVKASELKIIIADQKDFEWAEKQKSKTNSQSINFL 172 Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 QP +L Y ++P+WR+S+QTHKF+G+R Sbjct: 173 QPEWNSRTSS--SLIYKYICKHPEWRMSLQTHKFLGVR 208 >gi|305665081|ref|YP_003861368.1| hypothetical protein FB2170_02240 [Maribacter sp. HTCC2170] gi|88709833|gb|EAR02065.1| hypothetical protein FB2170_02240 [Maribacter sp. HTCC2170] Length = 210 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 27/215 (12%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + E F T+QGEG H G A F R GC++ C +CD + Sbjct: 15 MLPLMEEFYTIQGEGYHKGTAAYFVRVGGCDV-----------GCHWCDVK----ESWDA 59 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + ++ + V+TGGEPL PL QAL + +ET+G Sbjct: 60 ETHPPTDIKSIV----VNAAVYSDTIVVTGGEPLTWDMGPLTQALKSKNINTHIETSGAY 115 Query: 123 EPPQGIDWICVSPKAG---CDLKIKGGQELK-LVFPQVNVSPENYIGFDFER---FSLQP 175 + DWIC+SPK L + ELK +V+ + ++ + LQP Sbjct: 116 KLTGDWDWICLSPKKNKLPSGLIYEKAHELKVIVYNKHDLIFAEEQAAQVGKNCILYLQP 175 Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + ++ + + Y +NPKW++S+QTHK++ I Sbjct: 176 -EWSVRDKVVPMIVEYVMKNPKWKVSLQTHKYLNI 209 >gi|88803479|ref|ZP_01119005.1| hypothetical protein PI23P_12842 [Polaribacter irgensii 23-P] gi|88781045|gb|EAR12224.1| hypothetical protein PI23P_12842 [Polaribacter irgensii 23-P] Length = 209 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 27/215 (12%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + E F T+QGEG H G A F R GC++ C +CD ++ + Sbjct: 14 MLPLMEEFYTIQGEGCHTGTAAYFIRVGGCDV-----------GCHWCD-----VKESWN 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + LAD I E +K V+TGGEPL+ + ++L K + +ET+G Sbjct: 58 ADLHPPTLADTIVENV---KKHANTVVITGGEPLMWSMDYITESLQKNSIKTHIETSGAY 114 Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQ----VNVSPENYIGFDFERFSLQP 175 DW C+SP K D ELK++ + E + LQP Sbjct: 115 AFSGKWDWFCLSPKKTKMPLDECYPEADELKMIIHNKSDFIFAEQEAEKVGQKCQLYLQP 174 Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E+ T L ++Y +NPKW++S+QTHKF+ I Sbjct: 175 -EWSKKEKMTALIVAYVMKNPKWKISLQTHKFLNI 208 >gi|291514643|emb|CBK63853.1| Organic radical activating enzymes [Alistipes shahii WAL 8301] Length = 211 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 34/220 (15%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 ++ + E F T+QGEG HAG+ A F R GC++ CR+CD + Sbjct: 14 RMLPLVEDFYTIQGEGFHAGKPAYFIRLGGCDV-----------GCRWCDAKYTW----N 58 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 Y + +I+ + V+TGGEPLL L + L +RG +I +ET+G+ Sbjct: 59 PKLYPPTDVQTVIDRAMSC---PAQAIVITGGEPLLYPLGVLTETLRERGLQIFLETSGS 115 Query: 122 IEPPQGIDWICVSPK---AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER-------- 170 DW+C+SPK D + ELK++ S E++ + Sbjct: 116 HPFSGVFDWVCLSPKRRQPPLDEAFERADELKVIVE----SEEDFEWAERNAARVGGKCL 171 Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP + E+ + Y +P+W +S+QTHK++ I Sbjct: 172 LFLQP-EWSVAEKVMPAIVEYAKAHPQWNISIQTHKYMHI 210 >gi|261749286|ref|YP_003256971.1| hypothetical protein BPLAN_199 [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497378|gb|ACX83828.1| conserved hypothetical protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 204 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 67/216 (31%), Positives = 101/216 (46%), Gaps = 29/216 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + +KE F ++QGEG +G A F RF GCN QC +CDT + K Sbjct: 8 FPVKETFYSIQGEGFFSGIAAYFIRFEGCN-----------IQCDWCDTK-SSWKIEKKD 55 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 V ++ + I E + + V+TGGEP++ PL L K+G+ I VET+G+ Sbjct: 56 FLTVHKIINNINE-------KVKTIVITGGEPMMWNLTPLTSLLKKKGYRIHVETSGSYP 108 Query: 124 PPQ-GIDWICVSPKA---GCDLKIKGGQELKLVF-PQVNVSPENYIGFDFER----FSLQ 174 + IDWI +SPK K ELK++ + + S F ++ LQ Sbjct: 109 IHEKDIDWITISPKKKKRPLKENYKKMNELKIIICNESDFSFAEEQAFYVKKSNCVLCLQ 168 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P + + ISY +PKW++S+Q HK + I Sbjct: 169 P-EWKNNIKILPKIISYIKNHPKWKISLQIHKILNI 203 >gi|110638115|ref|YP_678324.1| organic radical activating enzyme [Cytophaga hutchinsonii ATCC 33406] gi|110280796|gb|ABG58982.1| conserved hypothetical protein; possible organic radical activating enzyme [Cytophaga hutchinsonii ATCC 33406] Length = 205 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 64/214 (29%), Positives = 97/214 (45%), Gaps = 26/214 (12%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F T+QGEG + GR A F R +GC++ C +CD + Sbjct: 10 LPVMESFYTIQGEGHYQGRAAYFIRLAGCDV-----------GCHWCDVK----ESWDAS 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 ++ + + ++ E GR V+TGGEPL+ L L + GF +ET+G Sbjct: 55 QHPMQTIEHMVAE---ASAFTGRIAVITGGEPLMHDLTNLTAQLKQEGFRNHIETSGAHP 111 Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVSPENYIGFDFE---RFSLQPM 176 DWIC+SP KA I+ ELK +VF ++ + + LQP Sbjct: 112 LSGEWDWICLSPKKFKAPLPSVIEACDELKIIVFHSSDIEWAKTFLPKLKKGCKLFLQP- 170 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + EE IS+ +NP+W +S+Q HKF+ I Sbjct: 171 EWSRQEEMLPQIISFVKENPEWEISLQIHKFMNI 204 >gi|256819499|ref|YP_003140778.1| Radical SAM domain-containing protein [Capnocytophaga ochracea DSM 7271] gi|256581082|gb|ACU92217.1| Radical SAM domain protein [Capnocytophaga ochracea DSM 7271] Length = 210 Score = 204 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 90/217 (41%), Gaps = 27/217 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 +L + E F TLQGEG + G A F R GC++ C +CD + + Sbjct: 14 ELLPLMEAFYTLQGEGFYKGTAAYFIRLGGCDV-----------GCHWCDVK----ESWQ 58 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + + + ++ E + ++TGGEPL+ L + L G +ET+G Sbjct: 59 AEAHPLVPVDTIVAE----ALAHSKTIIITGGEPLMWNLTLLTEKLRAGGARTHIETSGA 114 Query: 122 IEPPQGIDWICVSPKAGCDL---KIKGGQELKLVF---PQVNVSPENYIGFDFER-FSLQ 174 DWIC+SPK ++ ELK+V + E E LQ Sbjct: 115 HPLSGSWDWICLSPKKIKRPVGDVLQKANELKMVIYNNHDFIFAEEMAAQVSPECLLYLQ 174 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 P + E + Y +P+W+ S+Q HK++ IR Sbjct: 175 P-EWSKRAEVMPKIVDYVMAHPQWKASLQMHKYLDIR 210 >gi|315224929|ref|ZP_07866748.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Capnocytophaga ochracea F0287] gi|314945042|gb|EFS97072.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Capnocytophaga ochracea F0287] Length = 210 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 56/217 (25%), Positives = 90/217 (41%), Gaps = 27/217 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 +L + E F TLQGEG + G A F R GC++ C +CD + + Sbjct: 14 ELLPLMEAFYTLQGEGFYKGTAAYFIRLGGCDV-----------GCHWCDVK----ESWQ 58 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + + + ++ E + ++TGGEPL+ L + L G +ET+G Sbjct: 59 AEAHPLVPVDTIVAE----ALAHSKTIIITGGEPLMWNLTLLTEKLRAGGARTHIETSGA 114 Query: 122 IEPPQGIDWICVSPKAGCDL---KIKGGQELKLV-FPQVNVSPENYIGFDFE---RFSLQ 174 DWIC+SPK ++ ELK+V + + I LQ Sbjct: 115 HPLSGTWDWICLSPKKIKRPVGDVLQKANELKMVIYNNHDFIFAEEIAAQVSPECLLYLQ 174 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 P + E + Y +P+W+ S+Q HK++ IR Sbjct: 175 P-EWSKRAEVMPKIVDYVMAHPQWKASLQMHKYLDIR 210 >gi|149276391|ref|ZP_01882535.1| hypothetical protein PBAL39_01687 [Pedobacter sp. BAL39] gi|149232911|gb|EDM38286.1| hypothetical protein PBAL39_01687 [Pedobacter sp. BAL39] Length = 193 Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats. Identities = 63/211 (29%), Positives = 96/211 (45%), Gaps = 26/211 (12%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66 E F T+QGEG + G+ A F R GC++ C +CD + + Sbjct: 1 MEEFYTIQGEGFNTGKAAYFIRLGGCDV-----------GCHWCDVK----ESWDAELHP 45 Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQ 126 + D++E+ G+ V+TGGEPL+ L + L +R +ET+G Sbjct: 46 LTAADDIVEK---ADSFPGKAVVITGGEPLIYNLDYLTRKLRERNILTFIETSGAYPLSG 102 Query: 127 GIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVS-PENYIGFDFE--RFSLQPMDGP 179 DWIC+SP KA ELK ++F + + E Y + + LQP + Sbjct: 103 SWDWICLSPKKFKAPRPDITPFANELKVIIFNKSDFKWAEQYAETVSKNCKLYLQP-EWS 161 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +E T + I Y NPKW +S+QTHK++ I Sbjct: 162 KSKEITPMIIEYVMANPKWEISLQTHKYLNI 192 >gi|149910796|ref|ZP_01899430.1| radical activating enzyme [Moritella sp. PE36] gi|149806130|gb|EDM66110.1| radical activating enzyme [Moritella sp. PE36] Length = 222 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 60/237 (25%), Positives = 90/237 (37%), Gaps = 48/237 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y + EIF T+QGEG G +F R GC++ C +CDT Sbjct: 3 YPVNEIFETVQGEGHFTGYPVIFIRLQGCDV-----------GCSWCDTKQTWTVDPEMQ 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + + +I++ ++ V++GGEP V L Sbjct: 52 VSQQTVNKACDDKPHWANFTAQEFITMIQKNGFVA----KHIVISGGEPCQYDLVELTSE 107 Query: 107 LNKRGFEIAVETNGTIEPPQ-GIDWICVSPKAGCDL-------KIKGGQELKLVFPQVNV 158 L + G+ +ET+GT E W+ VSPK ++ E+K V Sbjct: 108 LEQAGYFCQIETSGTSEVRATDSTWVTVSPKIQMKGQLPVLQSALRRANEIKHVIAMEKH 167 Query: 159 SPE-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E I + LQP+ + T+LAI C + W+LSVQ HK+I I Sbjct: 168 IEELDALIADIDTSDKIMCLQPISQ--QKRATDLAIKLCIER-NWKLSVQMHKYIFI 221 >gi|325954686|ref|YP_004238346.1| radical SAM protein [Weeksella virosa DSM 16922] gi|323437304|gb|ADX67768.1| Radical SAM domain protein [Weeksella virosa DSM 16922] Length = 215 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 61/216 (28%), Positives = 98/216 (45%), Gaps = 27/216 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 +L + E F TLQGEG +AG A F R GC++ C +CD + Sbjct: 19 RLLPVMEHFYTLQGEGAYAGVAAYFIRLGGCDV-----------GCHWCDVK----ESWD 63 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + + +A L +E + ++TGGEPL+ L L+K G I +ET+G Sbjct: 64 AEIHPLTDIATLAKEAAAI----CKTIIITGGEPLMWDLTFLTSELHKHGANIHIETSGA 119 Query: 122 IEPPQGIDWICVSPKA---GCDLKIKGGQELK-LVFPQVNVSPENYIGF---DFERFSLQ 174 IDW+ +SPK + + ELK +++ Q + + D LQ Sbjct: 120 YPLTGEIDWVTLSPKKTKLPVESIYQQANELKMIIYNQHDFTFAEEQAAKVKDNCLLYLQ 179 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ + + + + QNPKWR++VQTHK++ I Sbjct: 180 -VEWSKRDSMSPKLVEFIKQNPKWRITVQTHKYLDI 214 >gi|260435246|ref|ZP_05789216.1| organic radical activating enzyme [Synechococcus sp. WH 8109] gi|260413120|gb|EEX06416.1| organic radical activating enzyme [Synechococcus sp. WH 8109] Length = 205 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 69/217 (31%), Positives = 99/217 (45%), Gaps = 27/217 (12%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F +LQGEG HAGR A F R +GC + C +CDT Sbjct: 7 LPVVETFHSLQGEGRHAGRSAFFIRLAGC-----------TVGCSWCDTKHSW----PSQ 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTI 122 + + L + E + V+TGGEPL PL QAL+ R G + +ET+G Sbjct: 52 GHAEQPIGALASAAQMAAEAGASFVVITGGEPLHHNLQPLTQALDARCGLPLHLETSGVD 111 Query: 123 EPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVN-----VSPENYIGFDFERFSLQ 174 DWI +SPK + ++ ELK+V + + D ER LQ Sbjct: 112 PLTGRFDWITLSPKRHRPPRQELLQACHELKVVVHGPEDISFAAAMASQCEDDTERL-LQ 170 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 P G LA+ + ++P+WRLS+Q+HK++GIR Sbjct: 171 P--GWESSIGEELALDHVRKHPQWRLSLQSHKWLGIR 205 >gi|223041979|ref|ZP_03612163.1| hypothetical protein AM202_0574 [Actinobacillus minor 202] gi|223017236|gb|EEF15664.1| hypothetical protein AM202_0574 [Actinobacillus minor 202] Length = 206 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 35/222 (15%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 Y I EIF +LQGEG + G ++F RF CNL C +CDT + Sbjct: 7 TYPIVEIFESLQGEGFNTGMPSIFIRFGKCNLT-----------CSWCDTPYHQFDS--- 52 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 + + Q+ + +E + + ++TGGEP +Q ++ L+ L +RG+ +A+ETNG Sbjct: 53 --WTLPQILEKVE------GYQAKNIIITGGEPTIQPNLTVLLDELKRRGYFLAIETNGL 104 Query: 122 IEPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS--PENYIGFDFERFSLQ 174 + P ID+I SPK K I E+++V + ++ + ER+ L Sbjct: 105 KDIPSQIDYIATSPKRLYAEKYQRRCIPFAHEVRIVADENVIAFCEQIEAQISAERYYLS 164 Query: 175 PMDGP----FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211 P + LE T + ++ PKW+LS+QTHK +GI Sbjct: 165 PCEVEGKMNLLETITQIGLLNQRKNKPKWQLSIQTHKIVGIE 206 >gi|228469718|ref|ZP_04054686.1| organic radical activating enzyme [Porphyromonas uenonis 60-3] gi|228308737|gb|EEK17463.1| organic radical activating enzyme [Porphyromonas uenonis 60-3] Length = 201 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 101/223 (45%), Gaps = 34/223 (15%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M+ + EIF +LQGEGG GR +F R SGCNL C +CDTDF G Sbjct: 1 MQSLPVNEIFYSLQGEGGQMGRAMLFVRLSGCNL-----------ACDYCDTDFAG---- 45 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 V ++ +E R + TGGEP L + I +++G+ ++ETNG Sbjct: 46 -HRLMTVAEILAKLES------YPCRDILWTGGEPTLALREEHIAFFHEQGYRQSIETNG 98 Query: 121 TIEPPQGIDWICVSPKAGCDLKIK---------GGQELKLVFP-QVNVSPENYIGFDFER 170 T P+G+D++ SPKA ++ G E++ + P R Sbjct: 99 TRPVPRGLDYVTCSPKAEAISGLRERFVDNYPDGIDEVRWPLQLGAPLPPPIEQLVQARR 158 Query: 171 FSLQPMD--GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + + P++ G + + + +P+WRLSVQ HK +G R Sbjct: 159 YYVSPVEETGVEMSAVVARCMDFVLAHPEWRLSVQLHKLLGFR 201 >gi|240949106|ref|ZP_04753454.1| hypothetical protein AM305_01574 [Actinobacillus minor NM305] gi|240296501|gb|EER47133.1| hypothetical protein AM305_01574 [Actinobacillus minor NM305] Length = 206 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 108/222 (48%), Gaps = 35/222 (15%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 Y I EIF +LQGEG + G ++F RF CNL C +CDT + Sbjct: 7 TYPIVEIFESLQGEGFNTGMPSIFIRFGKCNLT-----------CSWCDTPYHQFDS--- 52 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 + + Q+ + +E + + ++TGGEP +Q ++ L+ L +RG+ +A+ETNG Sbjct: 53 --WTLTQILEKVE------GYQAKNIIITGGEPTIQPNLTVLLDELKQRGYFLAIETNGL 104 Query: 122 IEPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQ 174 + P ID+I SPK K I E+++V + ++ I + ER+ L Sbjct: 105 KDIPTQIDYIATSPKRLYAKKYQRRCIPFAHEVRIVADENVIAFCEQIETQINAERYYLS 164 Query: 175 PMDGP----FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211 P + LE T + ++ PKW+LS+QTHK +GI Sbjct: 165 PCEVEGKMNLLETITQIGLLNQRKNKPKWQLSIQTHKIVGIE 206 >gi|148240798|ref|YP_001226185.1| organic radical activating protein [Synechococcus sp. WH 7803] gi|147849337|emb|CAK24888.1| Organic radical activating enzyme [Synechococcus sp. WH 7803] Length = 208 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 64/215 (29%), Positives = 94/215 (43%), Gaps = 24/215 (11%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F +LQGEG HAGR A F R +GC S C +CDT Sbjct: 11 LPVVETFHSLQGEGLHAGRSAFFIRLAGC-----------SVGCSWCDTKHSW----PAE 55 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTI 122 + L + E + V+TGGEPL L Q L K G + +ET+G Sbjct: 56 SHPARTLHSIATEAAAAASDGAAFVVITGGEPLHHNLDALAQTLRKICGLPLHLETSGVD 115 Query: 123 EPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQ-VNVSPENYIGFDFER--FSLQPM 176 DWI +SPK + + ELK+V + ++ + + + LQP Sbjct: 116 PLSGNPDWITLSPKRHAPPRAELLSRCHELKVVVHEPADLLFAEVLSAQAPQAAWLLQP- 174 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 G E LA+ ++ +WRLS+Q+HK++G+R Sbjct: 175 -GWESVEGQQLALDAARRDGRWRLSLQSHKWLGVR 208 >gi|261380779|ref|ZP_05985352.1| radical SAM domain protein [Neisseria subflava NJ9703] gi|284796241|gb|EFC51588.1| radical SAM domain protein [Neisseria subflava NJ9703] Length = 211 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 101/222 (45%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 12 YRIVEIFESLQGEGWNTGMPAVFIRLGKCNL-----------ACSWCDTDYL-------- 52 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ + L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 53 KFGMMSLSDIL---GRLKTYTARNIIITGGEPTIQPHLDTLLNALKAEGYFLCIETNGLN 109 Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVS--PENYIGFDFERFSLQP 175 P ID++ SPKA K + G E+++V ++ E + + L P Sbjct: 110 PAPPQIDYVATSPKACYAAKYESGCIEKADEVRIVADGDVIAFCQEMERKIRAQHYYLSP 169 Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 DG +T I P W+LSVQTHK+ GI Sbjct: 170 CEQDGVMNIYDTIRQIGVLNSRPDAPVHWQLSVQTHKWAGIE 211 >gi|241759459|ref|ZP_04757563.1| NrdG protein [Neisseria flavescens SK114] gi|241320241|gb|EER56574.1| NrdG protein [Neisseria flavescens SK114] Length = 211 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 101/222 (45%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 12 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 52 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 ++ + L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 53 KFGMMSLSDIL---GRLKTYTARNVIITGGEPTIQPHLNTLLDALKAEGYFLCIETNGLN 109 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS--PENYIGFDFERFSLQP 175 P ID++ SPKA K I+ E+++V V+ E + + L P Sbjct: 110 PAPPQIDYVATSPKACYAAKYESSCIEKADEVRIVADGDVVAFCQEMERKIRAQHYYLSP 169 Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 DG +T I P W+LSVQTHK+ GI Sbjct: 170 CEQDGVMNIYDTIRQIGVLNSRPDAPVHWQLSVQTHKWAGIE 211 >gi|323497330|ref|ZP_08102348.1| organic radical activating enzyme [Vibrio sinaloensis DSM 21326] gi|323317413|gb|EGA70406.1| organic radical activating enzyme [Vibrio sinaloensis DSM 21326] Length = 216 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 60/232 (25%), Positives = 92/232 (39%), Gaps = 47/232 (20%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68 +F T+QGEG + G +VF R C + C +CDT + + D Sbjct: 1 MFETIQGEGVYTGVPSVFVRLQECPV-----------GCAWCDTKQTW-EALPEDETSFD 48 Query: 69 QL--------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114 ++ A+ I Q+ ++ V+TGGEP + PL +A G + Sbjct: 49 RIMVKTQDSPTWCSTSAEGIVNQYRVQGYTAKHIVITGGEPCVYDLRPLTEAFEAIGCQC 108 Query: 115 AVETNGTIEP-PQGIDWICVSPKAGCDLKIK-------GGQELKLVFPQVNVSPENYIGF 166 +ET+GT E W+ VSPK K+ E+K P + + Sbjct: 109 QIETSGTSEVLTSDNTWVTVSPKVAMKGKLPVLDSALLRADEIK--HPVATEKDIDQLDE 166 Query: 167 DFER--------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +R +LQP+ T L I C + WRLS+QTHK++ I Sbjct: 167 LIKRAQVPKQTTIALQPISQK--PRATQLCIDVCVKR-NWRLSIQTHKYLSI 215 >gi|257059021|ref|YP_003136909.1| radical activating enzyme [Cyanothece sp. PCC 8802] gi|256589187|gb|ACV00074.1| radical activating enzyme [Cyanothece sp. PCC 8802] Length = 205 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 58/215 (26%), Positives = 84/215 (39%), Gaps = 27/215 (12%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 Y I E F ++QGEG G A F R +GC++ C +CD + Sbjct: 10 TYPIVETFHSIQGEGVWTGVNAFFIRLAGCDV-----------HCPWCDQK----ESWPV 54 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 Y L L E ++TGGEPL+ PL L G + +ET+G+ Sbjct: 55 QPYPQQSLEALGEAAKRAN---PAIVIITGGEPLMHNLDPLTAQLRGLGLRVHLETSGSH 111 Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVF---PQVNVSPENYIGFDFERF-SLQP 175 DW+ SPK + ELK+V + + + LQP Sbjct: 112 PFSGQFDWVTFSPKPFKLPHESIYPQVDELKVVITSQEDLQWAEHQAAQVPLKTIKYLQP 171 Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E+ L Y +P WR+S+Q HKF+G+ Sbjct: 172 EWNT--PESQQLIFDYVLHHPDWRISLQVHKFLGV 204 >gi|262195340|ref|YP_003266549.1| radical SAM protein [Haliangium ochraceum DSM 14365] gi|262078687|gb|ACY14656.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365] Length = 211 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 106/222 (47%), Gaps = 35/222 (15%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 Y +KEIF TLQGEG HAGR VF RF+GCNL QC +CDTDF Sbjct: 9 YRVKEIFGPTLQGEGTHAGRACVFLRFAGCNL-----------QCSWCDTDFS---PEGA 54 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 R D++ + + + G R ++TGGEP LQ D L AL GF + +E+NGT Sbjct: 55 ERLRADEITERLLALDVHG---ARTVIVTGGEPALQWDQELADALRAAGFRVHMESNGTR 111 Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQEL-----KLVFPQ------VNVSPENYIGFDF 168 P +DW+ VSPK G + E KLV + +Y G D Sbjct: 112 PPRAPVDWLTVSPKVQFHGPREALFASAEAAVSECKLVVDDSVSHDTLAALEHHYEGAD- 170 Query: 169 ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP E++ ++ + P+WRLS+Q HK +G+ Sbjct: 171 --LLLQPCMDADYEQHLARTLTLIGERPRWRLSLQLHKIVGV 210 >gi|113953027|ref|YP_732046.1| organic radical activating protein [Synechococcus sp. CC9311] gi|113880378|gb|ABI45336.1| possible organic radical activating enzyme [Synechococcus sp. CC9311] Length = 202 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 64/216 (29%), Positives = 99/216 (45%), Gaps = 26/216 (12%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F +LQGEG H GR A F R +GC++ CR+CDT + Sbjct: 5 LPVVETFHSLQGEGLHTGRSAFFIRLAGCDV-----------GCRWCDTKHSWPADSHPK 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF--EIAVETNGT 121 R + DL E E + V+TGGEPL L A+ G + +ET+G Sbjct: 54 RL----VKDLAIEATSAAETGAAFVVITGGEPLHHNLDELTAAIRS-GCSQPVHLETSGV 108 Query: 122 IEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQ-VNVSPENYIGFDFER--FSLQP 175 DWI +SPK + ++ ELK+V + ++ + + + LQP Sbjct: 109 DRLSGAPDWITLSPKRHKPPRQDVVQACHELKVVVHEPADLLFAEVVAAQAPQANWLLQP 168 Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 G +E LA+ ++ +WRLS+Q+HK++G+R Sbjct: 169 --GWDCKEGLQLAVGKVQKDQRWRLSMQSHKWLGVR 202 >gi|34540794|ref|NP_905273.1| hypothetical protein PG1057 [Porphyromonas gingivalis W83] gi|34397108|gb|AAQ66172.1| conserved hypothetical protein [Porphyromonas gingivalis W83] Length = 197 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 68/216 (31%), Positives = 98/216 (45%), Gaps = 33/216 (15%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +LQGEG + GR AVF R +GCNL C +CDTDF G + Sbjct: 3 VNEIFHSLQGEGANTGRAAVFVRLAGCNL-----------ACPYCDTDFAQ-----GKKM 46 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 +++++A IE R+ + TGGEP LQ+ ++ G+ A+ETNGT P Sbjct: 47 SLEEIARSIE------HYPTRFLIWTGGEPTLQLTEEATAYFHRLGYFQAIETNGTRPVP 100 Query: 126 QGIDWICVSPKAGCDLKIK-----GGQELKLVF-PQVNVSPENYIGFDFERFSLQPMDGP 179 +GID+I SPK G K+K G E + + P + + + P+ Sbjct: 101 KGIDYISCSPKTGAIGKLKENFPDGVGEFRFPLGSDTPLPPPIDELPTAQHYLVSPIFAG 160 Query: 180 F-----LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + P WRLS+Q HK I I Sbjct: 161 DDAMEPDPSAITRCVEFVKAFPAWRLSIQMHKLIHI 196 >gi|329119485|ref|ZP_08248170.1| radical SAM domain protein [Neisseria bacilliformis ATCC BAA-1200] gi|327464418|gb|EGF10718.1| radical SAM domain protein [Neisseria bacilliformis ATCC BAA-1200] Length = 212 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 100/222 (45%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G A+F R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAIFVRLGKCNL-----------ACSWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 ++++ L++++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 54 KFSMMPLSEIL---GRLKNYTARNIIITGGEPTIQPHLNTLLDALKNAGYRLCIETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPENYI--GFDFERFSLQP 175 P ID++ SPKA K + E+++V +S + R+ L P Sbjct: 111 PAPPQIDYVAASPKACYAAKYEKSCIAAADEVRIVADGDVISFCEALEQKIRARRYYLSP 170 Query: 176 MDGP--FLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 + +T I P W+LSVQTHK+ GI Sbjct: 171 CEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212 >gi|284036696|ref|YP_003386626.1| organic radical activating enzyme [Spirosoma linguale DSM 74] gi|283815989|gb|ADB37827.1| organic radical activating enzyme [Spirosoma linguale DSM 74] Length = 216 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 62/215 (28%), Positives = 97/215 (45%), Gaps = 27/215 (12%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F T+QGEG H GR A F R GC++ C +CD Sbjct: 20 LPVMEAFYTIQGEGAHTGRAAYFIRLGGCDV-----------GCHWCDVKESW-DADAHP 67 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 + ++D L + GR V+TGGEPL+ L +AL GF+ +ET+G + Sbjct: 68 KQSIDALV------KGALQYPGRLAVITGGEPLMHDLTALTEALQVAGFKTNIETSGVCQ 121 Query: 124 -PPQGIDWICVSPKAGCDLK---IKGGQELK-LVFPQVNVS-PENYIGF--DFERFSLQP 175 DWIC SPK + ELK +++ Q + + E+++ + + LQ Sbjct: 122 TVTGSWDWICFSPKKFKKPNPAIYEKADELKVIIYNQSDFAFAESFVPYLRPDCKLFLQ- 180 Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E + Y +P+W++S+QTHKF+ I Sbjct: 181 SEWGRSNEMLPRIVDYVKDHPQWQISLQTHKFLNI 215 >gi|163786121|ref|ZP_02180569.1| hypothetical protein FBALC1_13087 [Flavobacteriales bacterium ALC-1] gi|159877981|gb|EDP72037.1| hypothetical protein FBALC1_13087 [Flavobacteriales bacterium ALC-1] Length = 210 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 59/215 (27%), Positives = 91/215 (42%), Gaps = 27/215 (12%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 L + E F T+QGEG H G A F R GC++ C +CD + Sbjct: 15 LLPLMEEFYTIQGEGYHKGTAAYFVRIGGCDV-----------GCHWCDVK----ESWLP 59 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + ++E K V+TGGEPL PL + L +G + +ET+G Sbjct: 60 ELHPATETTKIVE----NAIKYSDIIVVTGGEPLTWDMGPLTEQLKAKGVQTHIETSGAY 115 Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVF---PQVNVSPENYIGFDFERF-SLQP 175 + DWIC+SPK + ELK + + E + + LQP Sbjct: 116 KLTGQWDWICLSPKKVKLPTEEIYDEAHELKCIIYNKDDFKFAEEQAAKINKDCILYLQP 175 Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + ++ + Y NPKW++S+QTHK++ I Sbjct: 176 -EWSKRDKMMPQIVDYVMANPKWKVSLQTHKYLNI 209 >gi|298370138|ref|ZP_06981454.1| radical SAM domain protein [Neisseria sp. oral taxon 014 str. F0314] gi|298281598|gb|EFI23087.1| radical SAM domain protein [Neisseria sp. oral taxon 014 str. F0314] Length = 241 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 97/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 42 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 82 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ + L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 83 KFGMMSLSDIL---GRLKTYAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCIETNGLK 139 Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K + E+++V V+ + L P Sbjct: 140 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRIVADGDVVAFCENMERKIRARHYYLSP 199 Query: 176 MDG--PFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 + +T I P W+LSVQTHK+ GI Sbjct: 200 CEQNSVMNIYDTIRQIGLLNSRPDASVHWQLSVQTHKWAGIE 241 >gi|212702071|ref|ZP_03310199.1| hypothetical protein DESPIG_00073 [Desulfovibrio piger ATCC 29098] gi|212674512|gb|EEB34995.1| hypothetical protein DESPIG_00073 [Desulfovibrio piger ATCC 29098] Length = 225 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 95/245 (38%), Gaps = 54/245 (22%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI--- 57 M+ ++ E F+TLQGE AG AVF RF GC + C +CDT + Sbjct: 1 MRTLAVNEFFVTLQGEASFAGTPAVFVRFQGCPV-----------ACPWCDTQYAARLDG 49 Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104 G + L I E R+ VLTGGEP L Sbjct: 50 ATLDFAAVRAKQGPGAGYADVEPEALLAAIREAG------PRHVVLTGGEPCRHDLTELT 103 Query: 105 QALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKI-------KGGQELKLVFP-- 154 L GF + +ET+GT+ D W+ +SPK + + E+K Sbjct: 104 SRLVTEGFRVQIETSGTMPIRCHADVWVTLSPKLDMPGGLEVRQDAWERAGEIKFPVDTA 163 Query: 155 --------QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHK 206 + V+ + E LQP+ +E T L + F + +WR+SVQ HK Sbjct: 164 ADLARFEQALAVARQAASRPLTELVWLQPVSQ--GKEATRLCVEAAFAH-QWRVSVQVHK 220 Query: 207 FIGIR 211 ++ +R Sbjct: 221 YLDLR 225 >gi|218245972|ref|YP_002371343.1| hypothetical protein PCC8801_1116 [Cyanothece sp. PCC 8801] gi|218166450|gb|ACK65187.1| conserved hypothetical protein [Cyanothece sp. PCC 8801] Length = 205 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 58/215 (26%), Positives = 84/215 (39%), Gaps = 27/215 (12%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 Y I E F ++QGEG G A F R +GC++ C +CD + Sbjct: 10 TYPIVETFHSIQGEGVWMGVNAFFIRLAGCDV-----------HCPWCDQK----ESWPV 54 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 Y L L E ++TGGEPL+ PL L G + +ET+G+ Sbjct: 55 QPYPQQSLEALGEAAKRAN---PAIVIITGGEPLMHNLDPLTAQLRGLGLRVHLETSGSH 111 Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVF---PQVNVSPENYIGFDFERF-SLQP 175 DW+ SPK + ELK+V + + + LQP Sbjct: 112 PFSGQFDWVTFSPKPFKLPHESIYPQVDELKVVITSQEDLQWAEHQAAQVPLKTIKYLQP 171 Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E+ L Y +P WR+S+Q HKF+G+ Sbjct: 172 EWNT--PESQQLIFDYVLHHPDWRISLQVHKFLGV 204 >gi|261867762|ref|YP_003255684.1| NrdG protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413094|gb|ACX82465.1| NrdG protein [Aggregatibacter actinomycetemcomitans D11S-1] Length = 209 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 104/224 (46%), Gaps = 35/224 (15%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y+I EIF +LQGEG + G +F RF CNL C +CDT++ + Sbjct: 8 MPSYNIVEIFESLQGEGFNTGMPCIFVRFGKCNL-----------ACPWCDTNYNQFE-- 54 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 R + Q+ + + + ++TGGEP + ++ L++ + G+ +A+ETN Sbjct: 55 ---RMTLAQVMEEVRS------FSSKNIIITGGEPTIVPNIEILLEQMKSEGYFLAIETN 105 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPENYI--GFDFERFS 172 G P ID+I SPK K + E+++V + ++ I ER+ Sbjct: 106 GLKPIPPQIDYIATSPKRLYPHKYERRCIDFAHEVRIVADENVMAFCELIEDKIRAERYY 165 Query: 173 LQPMDG----PFLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211 L P + LE T L ++ PKW LSVQTHK IGI Sbjct: 166 LSPCEINGKMNLLETITQLGQLNQRVNRPKWLLSVQTHKLIGIE 209 >gi|219871538|ref|YP_002475913.1| anaerobic ribonucleotide reductase activating protein NrdG [Haemophilus parasuis SH0165] gi|219691742|gb|ACL32965.1| anaerobic ribonucleotide reductase activating protein NrdG [Haemophilus parasuis SH0165] Length = 204 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 103/221 (46%), Gaps = 35/221 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF TLQGEG + G ++F RF CNL C +CDT++ Sbjct: 6 YRIVEIFETLQGEGFNTGMPSIFIRFGKCNL-----------ACPWCDTNY--------N 46 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 +Y LAD+++ + + ++TGGEP +Q D+ L+ L G+ IA+ETNG Sbjct: 47 QYETKTLADIMQ---VVKGFSAKNIIITGGEPTIQPDLTYLLDTLKAEGYFIAIETNGLK 103 Query: 123 EPPQGIDWICVSPKA-----GCDLKIKGGQELKLVFPQVNVSPENYIG--FDFERFSLQP 175 P ID+I SPK I E+++V ++ I ER+ L P Sbjct: 104 PVPPQIDYIATSPKRLYQKNYLKHHIPFANEVRIVVDGDVLAFCEQIESTIKAERYYLSP 163 Query: 176 MDG----PFLEENTNLA-ISYCFQNPKWRLSVQTHKFIGIR 211 + LE T L ++ P+W+LS+QTHK GI Sbjct: 164 CEENGVMNMLETITQLGKLNQRPNKPRWQLSIQTHKMAGIE 204 >gi|313886424|ref|ZP_07820143.1| radical SAM domain protein [Porphyromonas asaccharolytica PR426713P-I] gi|312924105|gb|EFR34895.1| radical SAM domain protein [Porphyromonas asaccharolytica PR426713P-I] Length = 201 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 100/223 (44%), Gaps = 34/223 (15%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M+ + EIF +LQGEGG GR +F R SGCNL C +CDTDF G Q Sbjct: 1 MQPLPVNEIFYSLQGEGGQMGRAMLFVRLSGCNLT-----------CDYCDTDFAGHQ-- 47 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 ++ + G R + TGGEP L + I ++ G+ ++ETNG Sbjct: 48 ---LMTASEILAQL------GSYPCRDILWTGGEPTLALREEHIAFFHEHGYRQSIETNG 98 Query: 121 TIEPPQGIDWICVSPKAGCDLKIK---------GGQELKLVFP-QVNVSPENYIGFDFER 170 T PQG+D++ SPK ++ G E++ + P + R Sbjct: 99 TRPVPQGLDYVTCSPKPEAISGLRERFVDNYPDGIDEVRWPLQLGAPLPPPIEQLVEARR 158 Query: 171 FSLQPMD--GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + + P++ G + + + +P+WRLSVQ HK +G R Sbjct: 159 YYVSPVEETGVEMSAVVARCMDFVLAHPEWRLSVQLHKLLGFR 201 >gi|94676807|ref|YP_588675.1| hypothetical protein BCI_0220 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219957|gb|ABF14116.1| conserved hypothetical protein [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 223 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 92/238 (38%), Gaps = 49/238 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ----- 58 Y I I TLQGEG +G A+F R GC C +CDT + + Sbjct: 3 YPINSICQTLQGEGYFSGIPAIFIRLQGC-----------MVGCNWCDTKYTWHKNKIEQ 51 Query: 59 ------------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + + + + LI +Q ++ V+TGGEP + +PL Sbjct: 52 GIAKDIMLKKANSSVWSNLSEEDILALIVQQSWIA----KHVVITGGEPCMYDLLPLTYL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKLVFP-QVN 157 L + F +ET+GT W+ VSPK ++ E+K V Q + Sbjct: 108 LEQYKFSCQIETSGTQSIKCTSNTWVTVSPKINKHYDVQILAQALSRSNEIKHVVSRQRD 167 Query: 158 VSPENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + + LQP+ L T L I C WRLS+Q HK++ I Sbjct: 168 IKYLDELLLTLKDSKQRVICLQPLSQKKL--ATKLCIDTCIMR-NWRLSMQIHKYLNI 222 >gi|213963236|ref|ZP_03391493.1| radical SAM domain protein [Capnocytophaga sputigena Capno] gi|213954098|gb|EEB65423.1| radical SAM domain protein [Capnocytophaga sputigena Capno] Length = 210 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 27/217 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 ++ + E F +LQGEG + G A F R GC++ C +CD Sbjct: 14 EILPLMEAFYSLQGEGFYKGTAAYFIRLGGCDV-----------GCHWCDVKESW-AAEA 61 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 VD + + ++TGGEPL+ L Q L G +ET+G Sbjct: 62 HPLVPVDTIV-------TDALAHSKTMIITGGEPLMWNLDLLTQKLRAAGARTHIETSGA 114 Query: 122 IEPPQGIDWICVSPKAGCDL---KIKGGQELKLV-FPQVNVSPENYIGFDFE---RFSLQ 174 DWIC+SPK ++ ELK+V + + + LQ Sbjct: 115 HPLSGTFDWICLSPKKIKRPVGDVLQKANELKMVIYNNNDFLFAEEMAAQVSPDCLLYLQ 174 Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 P + + + Y +P+W+ S+Q HK++ IR Sbjct: 175 P-EWSKRNKVIPKIVDYVMAHPQWKASLQMHKYLDIR 210 >gi|255066205|ref|ZP_05318060.1| radical SAM domain protein [Neisseria sicca ATCC 29256] gi|255049415|gb|EET44879.1| radical SAM domain protein [Neisseria sicca ATCC 29256] Length = 212 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 100/222 (45%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++++ L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 54 KFSMMSLSDIL---GRLKTYTVRNIIITGGEPTIQPHLDTLLDALKAEGYFLCIETNGLK 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K I+ E+++V V+ + L P Sbjct: 111 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVAFCENMERKIRARHYYLSP 170 Query: 176 MD--GPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 + G +T I P W+LSVQTHK+ GI Sbjct: 171 CEQNGVMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212 >gi|87123419|ref|ZP_01079270.1| possible organic radical activating enzyme [Synechococcus sp. RS9917] gi|86169139|gb|EAQ70395.1| possible organic radical activating enzyme [Synechococcus sp. RS9917] Length = 202 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 64/216 (29%), Positives = 95/216 (43%), Gaps = 24/216 (11%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + E F +LQGEG HAGR A F R GC++ C +CDT Sbjct: 4 TLPVVETFHSLQGEGLHAGRSAFFIRLGGCDV-----------GCSWCDTKHSW-PAEAH 51 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGT 121 + +VD LA + VLTGGEPL L A+ + + +ET+G Sbjct: 52 PKRSVDSLA---AATAEAAHAGAAFVVLTGGEPLHHQLDALTAAIRRICSLPVHLETSGV 108 Query: 122 IEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQ-VNVSPENYIGFDFER--FSLQP 175 DW+ +SPK + ++ ELK+V + ++ + + + LQP Sbjct: 109 DPLSGAPDWVTLSPKRHRPPRAEVLQACDELKVVVHEPADLLFAEVVATQAPQATWLLQP 168 Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 G E LA NP+WRLS+Q+HK++G+R Sbjct: 169 --GWSSEAGQELATDMVRGNPRWRLSLQSHKWLGVR 202 >gi|121533882|ref|ZP_01665708.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1] gi|121307393|gb|EAX48309.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1] Length = 196 Score = 200 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 70/218 (32%), Positives = 97/218 (44%), Gaps = 31/218 (14%) Query: 1 MK--LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58 MK Y + EIF ++QGEG H G A F R +GCNL +CR+CDT Sbjct: 1 MKAIKYPVVEIFTSIQGEGTHMGLPAAFIRLAGCNL-----------RCRWCDTVHA-FD 48 Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 D++A + + V+TGGEP L PL+ AL+ RG +A+ET Sbjct: 49 PANATYLTPDEIATGLA---------PQLVVITGGEPTLHDLGPLVAALHARGKYVAIET 99 Query: 119 NGTIEPPQ--GIDWICVSPKAGCDLKIK-GGQELKLVF-PQVNVSPENYIGFDFERFSLQ 174 NGT P+ GIDW+ SPK + ELK V + + R LQ Sbjct: 100 NGTNPIPEKWGIDWVTASPKPNSGYLLACQADELKYVVDDEFTLDCVADDAVPPGRIFLQ 159 Query: 175 PMDGPFLEENTNLAISYCFQNPK--WRLSVQTHKFIGI 210 E+ A + +NP+ RL +Q HK +G+ Sbjct: 160 VES--ARPESAKKAFALVMENPERGLRLGIQLHKILGV 195 >gi|255033903|ref|YP_003084524.1| hypothetical protein Dfer_0088 [Dyadobacter fermentans DSM 18053] gi|254946659|gb|ACT91359.1| conserved hypothetical protein [Dyadobacter fermentans DSM 18053] Length = 193 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 65/211 (30%), Positives = 95/211 (45%), Gaps = 26/211 (12%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66 E F TLQGEG H+GR A F R GC++ C +CD + +++ Sbjct: 1 MEAFYTLQGEGQHSGRAAYFIRLGGCDV-----------GCHWCDVKESW-DASIHPKFD 48 Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQ 126 ++ + D + GR V+TGGEPL+ L AL + GF+ +ET+G Sbjct: 49 INAIVD------GALQYPGRLAVITGGEPLMYNLDALTGALQEAGFKTNIETSGVYPFTG 102 Query: 127 GIDWICVSPKA---GCDLKIKGGQELKLVF---PQVNVSPENYIGFDFE-RFSLQPMDGP 179 DW+C SPK K ELK + + + E+ E +QP + Sbjct: 103 HWDWVCFSPKKFKTPHPDIYKNADELKTIIYNKSDFDFAEEHAAKVSPECTLLMQP-EWS 161 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + L I Y NPKW++S+QTHKF+ I Sbjct: 162 KQDVMLPLIIDYIKDNPKWKMSLQTHKFMNI 192 >gi|332177919|gb|AEE13609.1| Radical SAM domain protein [Porphyromonas asaccharolytica DSM 20707] Length = 201 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 100/223 (44%), Gaps = 34/223 (15%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M+ + EIF +LQGEGG GR +F R SGCNL C +CDTDF G Q Sbjct: 1 MQPLPVNEIFYSLQGEGGQMGRAMLFVRLSGCNLT-----------CDYCDTDFAGHQ-- 47 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 ++ + G R + TGGEP L + I ++ G+ ++ETNG Sbjct: 48 ---LMTASEILAQL------GSYPCRDILWTGGEPTLALREEHIAFFHEHGYRQSIETNG 98 Query: 121 TIEPPQGIDWICVSPKAGCDLKIK---------GGQELKLVFP-QVNVSPENYIGFDFER 170 T PQG+D++ SPK ++ G E++ + P + R Sbjct: 99 TRPMPQGLDYVTCSPKPEAISGLRERFVDNYPDGIDEVRWPLQLGAPLPPPIEQLAEARR 158 Query: 171 FSLQPMD--GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + + P++ G + + + +P+WRLSVQ HK +G R Sbjct: 159 YYVSPVEETGVEMSAVVARCMDFVLAHPEWRLSVQLHKLLGFR 201 >gi|229497033|ref|ZP_04390738.1| NrdG protein [Porphyromonas endodontalis ATCC 35406] gi|229316135|gb|EEN82063.1| NrdG protein [Porphyromonas endodontalis ATCC 35406] Length = 212 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 65/219 (29%), Positives = 91/219 (41%), Gaps = 33/219 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + EIF +LQGEG G VF R S CNL +C +CDTDF Sbjct: 16 LPVNEIFYSLQGEGAQVGLPMVFIRLSSCNL-----------RCSYCDTDFSS------- 57 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 + L ++ E + TGGEP L + ++ +++G+ ++ETNGT Sbjct: 58 -FTPMSLEAIVAEL---ASFPTHNILWTGGEPTLHLTEEVVGFFHQKGYRQSIETNGTRP 113 Query: 124 PPQGIDWICVSPKAGCDLKI-----KGGQELKLVFPQVNVSPENYIGFDFER-FSLQPMD 177 P+GID+I S K + G E + F P R + L P+ Sbjct: 114 VPRGIDYITCSAKPESFPHLWENFPHGVDEWRFPFGASAPLPPAIESLPPARTYCLSPIY 173 Query: 178 GP-----FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 P I Y Q+P WRLS+Q HK IGI+ Sbjct: 174 EPGEAILQPPHALEECIEYIKQHPTWRLSIQLHKIIGIQ 212 >gi|225077247|ref|ZP_03720446.1| hypothetical protein NEIFLAOT_02302 [Neisseria flavescens NRL30031/H210] gi|224951391|gb|EEG32600.1| hypothetical protein NEIFLAOT_02302 [Neisseria flavescens NRL30031/H210] Length = 211 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 101/222 (45%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 12 YRIVEIFESLQGEGWNTGMPAVFIRLGKCNL-----------ACSWCDTDYL-------- 52 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ + L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 53 KFGMMSLSDIL---GRLKTYTARNIIITGGEPTIQPHLDTLLNALKTEGYFLCIETNGLN 109 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS--PENYIGFDFERFSLQP 175 P ID++ SPKA K I+ E+++V ++ E + + L P Sbjct: 110 PAPPQIDYVATSPKACYVAKYEFSCIEKADEVRIVADGDVIAFCQEMERKIRAQHYYLSP 169 Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 DG +T I P W+LSVQTHK+ GI Sbjct: 170 CEQDGVMNIYDTIRQIGVLNSRPDAPVHWQLSVQTHKWAGIE 211 >gi|293390438|ref|ZP_06634772.1| NrdG protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950972|gb|EFE01091.1| NrdG protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 224 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 104/224 (46%), Gaps = 35/224 (15%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y+I EIF +LQGEG + G +F RF CNL C +CDT++ + Sbjct: 23 MPSYNIVEIFESLQGEGFNTGMPCIFVRFGKCNLT-----------CPWCDTNYNQFE-- 69 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 R + Q+ + + + ++TGGEP + ++ L++ + G+ +A+ETN Sbjct: 70 ---RMTLAQVMEEVRS------FSSKNIIITGGEPTIVPNIEILLEQMKSEGYFLAIETN 120 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPENYI--GFDFERFS 172 G P ID+I SPK K + E+++V + ++ I ER+ Sbjct: 121 GLKPIPPQIDYIATSPKRLYPNKYERRCIDFAHEVRIVADENVMAFCELIEDKIRAERYY 180 Query: 173 LQPMDG----PFLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211 L P + LE T L ++ PKW LSVQTHK IGI Sbjct: 181 LSPCEINGKMNLLETITQLGQLNQRVNRPKWLLSVQTHKLIGIE 224 >gi|225010558|ref|ZP_03701029.1| conserved hypothetical protein [Flavobacteria bacterium MS024-3C] gi|225005387|gb|EEG43338.1| conserved hypothetical protein [Flavobacteria bacterium MS024-3C] Length = 209 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 57/214 (26%), Positives = 90/214 (42%), Gaps = 28/214 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F T+QGEG H G A F R GC++ C +CD + Sbjct: 16 LPLMEAFYTIQGEGYHKGTAAYFIRVGGCDV-----------GCHWCDVK----ESWDAE 60 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 R+ + +I++ + V+TGGEPL P+ L K G + +ET+G Sbjct: 61 RHPPTAIEKIIQDA-----SPYKTIVITGGEPLTWDMGPVTAGLKKVGLQTHIETSGAYT 115 Query: 124 PPQGIDWICVSPKAG---CDLKIKGGQELKLVF---PQVNVSPENYIGF-DFERFSLQPM 176 DWIC+SPK K ELK++ + + E LQP Sbjct: 116 LTGEWDWICLSPKKNKLPLAPIYKEAHELKVIVFNKHDLEFAQEQAAQVGPNCHLYLQP- 174 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + ++ + + + NP W++S+QTHK++ I Sbjct: 175 EWSVKDKVVPMIVDFVMANPAWKVSLQTHKYLNI 208 >gi|318040803|ref|ZP_07972759.1| putative organic radical activating protein [Synechococcus sp. CB0101] Length = 216 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 89/222 (40%), Gaps = 31/222 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F +LQGEG H+GR A F R GC S C +CDT Q Sbjct: 12 LPVVETFHSLQGEGLHSGRSAWFIRLGGC-----------SVGCSWCDTKHSWPQDV--- 57 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 + + L L +E + V+TGGEPL PL +AL G + +ET+G Sbjct: 58 -HPLQSLEALQQEAQSAVANGAAFVVITGGEPLEHHLAPLCEALQPFGVPLHLETSGVGA 116 Query: 124 PPQGIDWICVSPKAGCDL---KIKGGQELKLVFPQVNVSPENYI-----------GFDFE 169 WI +SPK + ELK+V + Sbjct: 117 FTGAFAWITLSPKPHRPPTPEVLAACHELKVVVHEAADLAFAEAMAAASLNGRNNDQPAP 176 Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 LQP G LAI Y +P WRLS+Q+HK++G+R Sbjct: 177 ALLLQP--GWQSTTGQQLAIDYVRSHPSWRLSLQSHKWLGVR 216 >gi|124026869|ref|YP_001015984.1| putative organic radical activating protein [Prochlorococcus marinus str. NATL1A] gi|123961937|gb|ABM76720.1| possible organic radical activating enzyme [Prochlorococcus marinus str. NATL1A] Length = 213 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 95/227 (41%), Gaps = 35/227 (15%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + E F +LQGEG HAGR A F R + C C +CDT Sbjct: 3 SSLPVVECFHSLQGEGEHAGRSAYFIRLASC-----------KVGCPWCDTK----DSWN 47 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA-------LNKRGFEI 114 + L DL + E+ + V+TGGEPL L + L K+ I Sbjct: 48 SELHPQQSLIDLSTQTAKAQEEGAAFVVITGGEPLHHNLDDLCKEIRKSTLNLEKKSIPI 107 Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKG---GQELKLVFPQVN-----VSPENYIGF 166 +ET+G DWI +SPK ++ QELK+V + + I Sbjct: 108 HLETSGVDMLSGKPDWITLSPKRHSPPRLDNLLSCQELKVVIQNAEDLVFAKTMADSIKN 167 Query: 167 DFE---RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + LQ G EE LAI + NP WRLS+QTHK++G+ Sbjct: 168 NGKIKPQLFLQ--AGWENEEGQTLAIKFVKNNPDWRLSMQTHKWLGV 212 >gi|319639356|ref|ZP_07994107.1| NrdG protein [Neisseria mucosa C102] gi|317399540|gb|EFV80210.1| NrdG protein [Neisseria mucosa C102] Length = 211 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 99/222 (44%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 12 YRIVEIFESLQGEGWNTGMPAVFIRLGKCNL-----------ACSWCDTDYL-------- 52 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ + L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 53 KFGMMSLSDIL---GRLKTYTARNIIITGGEPTIQPHLDTLLNALKAEGYFLCIETNGLN 109 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS--PENYIGFDFERFSLQP 175 P ID++ SPKA K I+ E+++V ++ E + L P Sbjct: 110 PAPPQIDYVATSPKACYAAKYEKSCIEKADEVRIVADGEVIAFCQEMERKIRARHYYLSP 169 Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 DG +T I W+LSVQTHK+ GI Sbjct: 170 CEQDGAMNIYDTIRQIGVLNSRADAPVHWQLSVQTHKWAGIE 211 >gi|261378237|ref|ZP_05982810.1| radical SAM domain protein [Neisseria cinerea ATCC 14685] gi|269145315|gb|EEZ71733.1| radical SAM domain protein [Neisseria cinerea ATCC 14685] Length = 212 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 97/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G A+F R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAIFVRLGKCNL-----------ACGWCDTDYLT------- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 +++ L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 55 -FDIMSLSDIL---GRLKTYAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCIETNGLK 110 Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPK K + E+++V V+ R+ L P Sbjct: 111 PAPPQIDYVATSPKVCYADKYETNCIAEADEVRIVADGDVVAFCENMERKIRARRYYLSP 170 Query: 176 MDGP--FLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 + +T I P W+LSVQTHK+ GI Sbjct: 171 CEQNGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGIE 212 >gi|72383130|ref|YP_292485.1| putative organic radical activating protein [Prochlorococcus marinus str. NATL2A] gi|72002980|gb|AAZ58782.1| possible organic radical activating enzyme [Prochlorococcus marinus str. NATL2A] Length = 213 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 95/227 (41%), Gaps = 35/227 (15%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + E F +LQGEG HAGR A F R + C C +CDT Sbjct: 3 SSLPVVECFHSLQGEGEHAGRSAYFIRLASC-----------KVGCPWCDTK----DSWN 47 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA-------LNKRGFEI 114 + L DL + E+ + V+TGGEPL L + L K+ I Sbjct: 48 SELHPQQSLIDLSTQTAKAQEEGAAFVVITGGEPLHHNLDDLCKEIRKSTLNLEKKSIPI 107 Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKG---GQELKLVFPQVN-----VSPENYIGF 166 +ET+G DWI +SPK ++ QELK+V + + I Sbjct: 108 HLETSGVDMLSGKPDWITLSPKRHSPPRLDNLLSCQELKVVIQNAEDLLFAKTMADSIKN 167 Query: 167 DFE---RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + LQ G EE LAI + NP WRLS+QTHK++G+ Sbjct: 168 NGKIKPQLFLQ--AGWENEEGQTLAIKFVKNNPDWRLSMQTHKWLGV 212 >gi|296315126|ref|ZP_06865067.1| radical SAM domain protein [Neisseria polysaccharea ATCC 43768] gi|296838043|gb|EFH21981.1| radical SAM domain protein [Neisseria polysaccharea ATCC 43768] Length = 212 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 96/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 +++ L+D++ R ++TGGEP +Q L+ L G+ + +ETNG Sbjct: 55 -FSMMSLSDIL---GRLKAYAARNIIITGGEPTIQPHLDALLDTLKAEGYFLCLETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K I+ E+++V V + L P Sbjct: 111 PAPPQIDYVATSPKAYYAAKYEKSCIETADEVRIVADGDVVGFCENMERKIRARHYYLSP 170 Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 DG +T I P W+LSVQTHK+ GI Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212 >gi|152979671|ref|YP_001345300.1| radical SAM domain-containing protein [Actinobacillus succinogenes 130Z] gi|150841394|gb|ABR75365.1| Radical SAM domain protein [Actinobacillus succinogenes 130Z] Length = 208 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 101/221 (45%), Gaps = 35/221 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G A+F RF CNL C +CDT + Sbjct: 10 YPIVEIFESLQGEGANTGMPAIFIRFGKCNL-----------ACPWCDTPY--------N 50 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + +I++ + ++TGGEP +Q + L++ L + G+ +A+ETNG Sbjct: 51 EFAALTFSQIIQK---VRSFSAKNIIITGGEPTIQPRLSLLLEQLKQEGYFLAIETNGLK 107 Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPENYI--GFDFERFSLQP 175 P ID+I VSPK K E+++V + + +I + L P Sbjct: 108 TVPSQIDYIAVSPKGLYWEKYHSRCISFAHEVRIVADENVLKFCAFIEDKIKANHYYLSP 167 Query: 176 M--DGPFL--EENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211 DG E T L ++ PKW+LS+QTHK IGI Sbjct: 168 CETDGKMNLYETVTLLGQLNQRANRPKWQLSLQTHKLIGIE 208 >gi|254431688|ref|ZP_05045391.1| radical SAM [Cyanobium sp. PCC 7001] gi|197626141|gb|EDY38700.1| radical SAM [Cyanobium sp. PCC 7001] Length = 209 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 60/218 (27%), Positives = 90/218 (41%), Gaps = 27/218 (12%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F +LQGEG H G+ A F R +GC C +CDT Sbjct: 9 LPVVEAFHSLQGEGLHTGQSAFFIRLAGC-----------RVGCSWCDTKHSWPMAGHAE 57 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 L+ L + + + V+TGGEPL L L G + +ET+G Sbjct: 58 W----SLSGLADAALAARQAGAGFVVITGGEPLHHDLTALCALLRSHGLRLHLETSGVEP 113 Query: 124 PPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVN-------VSPENYIGFDFERFSL 173 +DWI +SPK + I+ ELK+V + ++ + + L Sbjct: 114 LRGQVDWIVLSPKRHQPPRDDLIRLCNELKVVVHSHDDLDFALAMARQANASGNHPALLL 173 Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 QP G E LA+ + + WRLS+Q+HK++ IR Sbjct: 174 QP--GWESTEGQRLALDFVRSHADWRLSLQSHKWLAIR 209 >gi|261401297|ref|ZP_05987422.1| radical SAM domain protein [Neisseria lactamica ATCC 23970] gi|269208675|gb|EEZ75130.1| radical SAM domain protein [Neisseria lactamica ATCC 23970] Length = 212 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 55 -FGMMSLSDIL---GRLKAYAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K + E+++V ++ + L P Sbjct: 111 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRIVADGDVLAFCENMERKIRARHYYLSP 170 Query: 176 MDGP--FLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 + +T I P W+LSVQTHK+ GI Sbjct: 171 CEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212 >gi|59800591|ref|YP_207303.1| hypothetical protein NGO0132 [Neisseria gonorrhoeae FA 1090] gi|59717486|gb|AAW88891.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] Length = 335 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 97/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 136 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 177 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 178 -FGMMSLSDIL---GRLKTYAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLK 233 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K I+ E+++V V + L P Sbjct: 234 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDAVGFCENMERKIRAHHYYLSP 293 Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 DG +T I P W+LSVQTHK+ GI Sbjct: 294 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 335 >gi|291044537|ref|ZP_06570246.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291011431|gb|EFE03427.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] Length = 267 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 97/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 68 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 109 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ I R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 110 -FGMMSLSDILGRLKI---YAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 165 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K I+ E+++V V + L P Sbjct: 166 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVGFCENMERKIRAHHYYLSP 225 Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 DG +T I P W+LSVQTHK+ GI Sbjct: 226 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 267 >gi|187251045|ref|YP_001875527.1| putative 6- pyruvoyltetrahydropterin 2-reductase [Elusimicrobium minutum Pei191] gi|186971205|gb|ACC98190.1| Putative 6- pyruvoyltetrahydropterin 2-reductase [Elusimicrobium minutum Pei191] Length = 195 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 105/213 (49%), Gaps = 30/213 (14%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + EIF +LQGEG + G AVF R SGC C FCDTDF Sbjct: 6 FKLTEIFYSLQGEGMYTGTAAVFVRLSGC-----------LMGCSFCDTDF--------K 46 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 V ++I+E + + ++TGGEP Q LI++L + G ++ +ETNG+I Sbjct: 47 ENFVMTSEEIIKE---VKKYPSKIVIITGGEPAEQDICALIKSLKQAGLKVHIETNGSIY 103 Query: 124 PP-QGIDWICVSPKAGCDLKI-KGGQELKLVFPQV-NVSP-ENYIGFDFE--RFSLQPMD 177 QG+D + VSPK D + K +K+V Q ++S + Y + E LQP Sbjct: 104 FDAQGVDNLTVSPKTYVDPNMLKSAHVIKIVVGQDTDISDLKKYFNYASEGRLIYLQPES 163 Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +EN +L + +NP RLS+QTHKF I Sbjct: 164 NK--QENIDLCVKLIKENPFLRLSLQTHKFAKI 194 >gi|294669279|ref|ZP_06734358.1| radical SAM domain protein [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308689|gb|EFE49932.1| radical SAM domain protein [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 212 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 96/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ + L+D++ R ++TGGEP +Q + L+ G+ + +ETNG Sbjct: 54 KFGMMSLSDIL---GRLKTYAARNVIITGGEPTIQPHLDTLLDTFKAEGYFLCIETNGLK 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K I E+++V V+ + L P Sbjct: 111 PAPPQIDYVATSPKACYAAKYETNCITEADEVRIVADGDVVAFCENMERKIRARHYYLSP 170 Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 DG +T I P W+LSVQTHK+ GI Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPAHWQLSVQTHKWAGIE 212 >gi|52425912|ref|YP_089049.1| NrdG protein [Mannheimia succiniciproducens MBEL55E] gi|52307964|gb|AAU38464.1| NrdG protein [Mannheimia succiniciproducens MBEL55E] Length = 224 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 100/221 (45%), Gaps = 35/221 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G +F RF CNL C +CDTD+ Sbjct: 26 YPIVEIFESLQGEGFNTGMPCIFVRFGKCNL-----------ACPWCDTDY--------E 66 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA-LNKRGFEIAVETNGTI 122 R+ L ++E+ + ++TGGEP +Q ++ L+ A + G+ +A+ETNG Sbjct: 67 RFEYRTLQQIVEK---VRSFSAKNIIITGGEPTIQPNISLLLAQFKRDGYFLAIETNGLR 123 Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQV--NVSPENYIGFDFERFSLQP 175 P ID+I SPKA K + E+++V N + ER+ L P Sbjct: 124 AVPPQIDYISASPKAMYAEKYRRRCIDFAHEVRIVMDADAENFCQQIEQKIRAERYYLSP 183 Query: 176 --MDGPFLEENTNLAISYCFQNPK---WRLSVQTHKFIGIR 211 ++G T + Q P W+LS+QTHK GI Sbjct: 184 CEIEGKMNLLETIALLGKLNQRPNKPKWQLSIQTHKLAGIE 224 >gi|319945214|ref|ZP_08019476.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Lautropia mirabilis ATCC 51599] gi|319741784|gb|EFV94209.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Lautropia mirabilis ATCC 51599] Length = 244 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 100/221 (45%), Gaps = 35/221 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF TLQGEG + G +VF RF CNL C +CDTD+ Sbjct: 46 YRIVEIFETLQGEGFNTGMPSVFIRFGKCNL-----------ACPWCDTDY--------N 86 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 R+ L D++ + R ++TGGEP +Q + L+ +L G +A+ETNG Sbjct: 87 RFGTMTLGDILAK---VRTFSARNVIITGGEPTIQPHLERLLDSLKAEGHFLAIETNGLK 143 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQV--NVSPENYIGFDFERFSLQP 175 P ID+I SPK IK E+++V + + +R+ L P Sbjct: 144 PVPPQIDYIATSPKRLYQQAYQKRHIKFAHEVRIVVDGDVRDFCAQIEDSIQADRYYLSP 203 Query: 176 MDG----PFLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211 + LE T L ++ P+W+LS+QTHK GI Sbjct: 204 CEVDGRMNMLETITQLGQLNQRPGRPRWQLSIQTHKLAGIE 244 >gi|262341203|ref|YP_003284058.1| radical SAM domain-containing protein [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272540|gb|ACY40448.1| radical SAM domain-containing protein [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 201 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 66/219 (30%), Positives = 98/219 (44%), Gaps = 28/219 (12%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + IKE F ++QGEG + G A F RF GCN +C +CDT + Sbjct: 1 MISFPIKESFYSIQGEGFYYGMAAFFIRFEGCN-----------IKCDWCDTK----ESW 45 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 K + + + ++I + V+TGGEP++ L + L K+G+ I VET+G Sbjct: 46 KIKKKDFIPIHEIIN---HISNYTVKNIVITGGEPMMWNLYHLTKILKKKGYRIHVETSG 102 Query: 121 TIEPPQG-IDWICVSPKA---GCDLKIKGGQELKLVFPQVN-----VSPENYIGFDFERF 171 T + +DWI VSPK + K ELK++ ++ Sbjct: 103 TYPIEEKYMDWITVSPKKIKLPLEENYKKTNELKIIISNEKDFLFAEEQAIHVKTTNCFL 162 Query: 172 SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP + ISY +NPKWR+S+Q HK + I Sbjct: 163 FLQP-EWTNFVTIFPKIISYIKENPKWRISLQIHKMLNI 200 >gi|159904363|ref|YP_001551707.1| putative organic radical activating protein [Prochlorococcus marinus str. MIT 9211] gi|159889539|gb|ABX09753.1| possible organic radical activating enzyme [Prochlorococcus marinus str. MIT 9211] Length = 226 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 98/240 (40%), Gaps = 48/240 (20%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + E F ++QGEG HAGR A F R + CN+ C +CDT + Sbjct: 3 TTLPVVESFHSIQGEGAHAGRSAFFIRLAQCNV-----------GCEWCDTKESWSSISH 51 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN-------KRGFEI 114 + + L++E I K + V+TGGEPL PL A+ I Sbjct: 52 PKK----TIDSLVQETTIAKSKGASFLVITGGEPLHHNLNPLCNAIKNNINSCGDNAIPI 107 Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQELKLV--------FPQVNVSPENY 163 +ET+G DWI +SPK K ++ QE+K++ F + + Sbjct: 108 HLETSGVHHMSGAPDWITLSPKRHFPPKEELLEACQEIKVIIHSKEDILFAEEMAHRSIH 167 Query: 164 IGFDFER-------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + LQP G LAI Y +NP+WRLS+QTHK++ I Sbjct: 168 AKKNAYKSRVSTKQSLIKPLLFLQP--GWGHSMGQKLAIEYVIKNPQWRLSLQTHKWLAI 225 >gi|218767651|ref|YP_002342163.1| hypothetical protein NMA0707 [Neisseria meningitidis Z2491] gi|121051659|emb|CAM07962.1| hypothetical protein NMA0707 [Neisseria meningitidis Z2491] gi|308388712|gb|ADO31032.1| hypothetical protein NMBB_0569 [Neisseria meningitidis alpha710] Length = 212 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 97/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 55 -FGMMSLSDIL---GRLKAYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K I+ E+++V V+ + L P Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVAFCENMERKIRAHHYYLSP 170 Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 DG +T I P W+LSVQTHK+ GI Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212 >gi|268596173|ref|ZP_06130340.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268549961|gb|EEZ44980.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] Length = 267 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 96/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 68 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 109 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 110 -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 165 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K I+ E+++V V + L P Sbjct: 166 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVGFCENMERKIRAHHYYLSP 225 Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 DG +T I P W+LSVQTHK+ GI Sbjct: 226 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 267 >gi|325127637|gb|EGC50553.1| radical SAM domain protein [Neisseria meningitidis N1568] gi|325135881|gb|EGC58493.1| radical SAM domain protein [Neisseria meningitidis M0579] gi|325202682|gb|ADY98136.1| radical SAM domain protein [Neisseria meningitidis M01-240149] gi|325207572|gb|ADZ03024.1| radical SAM domain protein [Neisseria meningitidis NZ-05/33] Length = 212 Score = 197 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 55 -FGMMSLSDIL---GRLKAYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K + E+++V ++ + L P Sbjct: 111 PAPPQIDYVATSPKACYAAKYENSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSP 170 Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 DG +T I P W+LSVQTHK+ GI Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212 >gi|240114982|ref|ZP_04729044.1| hypothetical protein NgonPID1_01797 [Neisseria gonorrhoeae PID18] gi|260441203|ref|ZP_05795019.1| hypothetical protein NgonDG_08991 [Neisseria gonorrhoeae DGI2] gi|268600650|ref|ZP_06134817.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268584781|gb|EEZ49457.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] Length = 212 Score = 197 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 97/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ I R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 55 -FGMMSLSDILGRLKI---YAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K I+ E+++V V + L P Sbjct: 111 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVGFCENMERKIRAHHYYLSP 170 Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 DG +T I P W+LSVQTHK+ GI Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212 >gi|313668991|ref|YP_004049275.1| hypothetical protein NLA_17110 [Neisseria lactamica ST-640] gi|313006453|emb|CBN87916.1| conserved hypothetical protein [Neisseria lactamica 020-06] Length = 212 Score = 197 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 97/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 55 -FGMMSLSDIL---GRLKTYTVRNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K I+ E+++V ++ + L P Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVLAFCENMERKIRARHYYLSP 170 Query: 176 MDGP--FLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 + +T I P W+LSVQTHK+ GI Sbjct: 171 CEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212 >gi|16330304|ref|NP_441032.1| hypothetical protein sll2011 [Synechocystis sp. PCC 6803] gi|1652793|dbj|BAA17712.1| sll2011 [Synechocystis sp. PCC 6803] Length = 208 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 62/217 (28%), Positives = 95/217 (43%), Gaps = 31/217 (14%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I E F +LQGEG AG A F R GC++ C +CD T Sbjct: 14 YPIAETFHSLQGEGAWAGGNAFFIRLGGCDV-----------HCPWCDQK-----ETWPT 57 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 +++ Q + +Q +T + + V+TGGEPL+ PL + L +G + +ET+G Sbjct: 58 QHHPRQTVTELVQQAVTAK--PSFVVITGGEPLMHDLQPLCKTLKNQGLRLHLETSGAYP 115 Query: 124 PPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP----- 175 DWI +SPK ELK++ Q E++ + E + P Sbjct: 116 LTGQFDWITLSPKPYKLPQAAIYPLANELKVIISQ----DEDFDWAEMEARKISPGTPLY 171 Query: 176 -MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 E +Y + +WRLS+QTHK++G+R Sbjct: 172 LQAEWETEAMNEKIFAYILTHSQWRLSLQTHKYLGVR 208 >gi|240013450|ref|ZP_04720363.1| hypothetical protein NgonD_02169 [Neisseria gonorrhoeae DGI18] gi|240015889|ref|ZP_04722429.1| hypothetical protein NgonFA_01772 [Neisseria gonorrhoeae FA6140] gi|240080029|ref|ZP_04724572.1| hypothetical protein NgonF_01775 [Neisseria gonorrhoeae FA19] gi|240112239|ref|ZP_04726729.1| hypothetical protein NgonM_01409 [Neisseria gonorrhoeae MS11] gi|240117266|ref|ZP_04731328.1| hypothetical protein NgonPID_02214 [Neisseria gonorrhoeae PID1] gi|240120521|ref|ZP_04733483.1| hypothetical protein NgonPI_01854 [Neisseria gonorrhoeae PID24-1] gi|240122820|ref|ZP_04735776.1| hypothetical protein NgonP_02565 [Neisseria gonorrhoeae PID332] gi|240125015|ref|ZP_04737901.1| hypothetical protein NgonSK_02119 [Neisseria gonorrhoeae SK-92-679] gi|254493044|ref|ZP_05106215.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268598297|ref|ZP_06132464.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268602962|ref|ZP_06137129.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268681434|ref|ZP_06148296.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268683601|ref|ZP_06150463.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|226512084|gb|EEH61429.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268582428|gb|EEZ47104.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268587093|gb|EEZ51769.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268621718|gb|EEZ54118.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268623885|gb|EEZ56285.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] Length = 212 Score = 197 bits (502), Expect = 9e-49, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 96/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 55 -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K I+ E+++V V + L P Sbjct: 111 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVGFCENMERKIRAHHYYLSP 170 Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 DG +T I P W+LSVQTHK+ GI Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212 >gi|309379630|emb|CBX21801.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 212 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 55 -FGMMSLSDIL---GRLKTYTVRNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLK 110 Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K + E+++V ++ + L P Sbjct: 111 PAPPQIDYVATSPKAYYAAKYETNCIAEADEVRIVADGDVLAFCENMERKIRARHYYLSP 170 Query: 176 MDGP--FLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 + +T I P W+LSVQTHK+ GI Sbjct: 171 CEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212 >gi|165976520|ref|YP_001652113.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876621|gb|ABY69669.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 210 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + I EIF +LQGEG + G +F R CNL C +CDT++ + Sbjct: 11 FPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY-----NEYE 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++++ ++ + ++ ++ ++TGGEP + ++ L+ G+ +A+ETNG Sbjct: 55 KWSLAKILERVKS------YSAKHIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNGLK 108 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS---PENYIGFDFERFSLQ 174 P+ ID+I SPK K I E+++V + +V + E + L Sbjct: 109 AVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVVDKGDVQSFCEQIETQITAEHYYLS 168 Query: 175 PM--DGP--FLEENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211 P DG LE T L I + PKW+LS+QTHK +GI Sbjct: 169 PCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGIE 210 >gi|240127528|ref|ZP_04740189.1| hypothetical protein NgonS_02574 [Neisseria gonorrhoeae SK-93-1035] gi|268685904|ref|ZP_06152766.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|268626188|gb|EEZ58588.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] Length = 212 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 96/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 55 -FGMMSLSDIL---GRLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K I+ E+++V V + L P Sbjct: 111 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDAVGFCENMERKIRAHHYYLSP 170 Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 DG +T I P W+LSVQTHK+ GI Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212 >gi|261393100|emb|CAX50697.1| conserved hypothetical protein [Neisseria meningitidis 8013] gi|325203620|gb|ADY99073.1| radical SAM domain protein [Neisseria meningitidis M01-240355] Length = 212 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 97/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 55 -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K I+ E+++V ++ + L P Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSP 170 Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 DG +T I P W+LSVQTHK+ GI Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212 >gi|254804413|ref|YP_003082634.1| hypothetical protein NMO_0411 [Neisseria meningitidis alpha14] gi|254667955|emb|CBA04204.1| conserved hypothetical protein [Neisseria meningitidis alpha14] Length = 212 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 55 -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K I+ E+++V V+ + L P Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVAFCENMERKIRAHHYYLSP 170 Query: 176 MDGP--FLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 + +T I P W+LSVQTHK+ GI Sbjct: 171 CEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212 >gi|261364119|ref|ZP_05977002.1| radical SAM domain protein [Neisseria mucosa ATCC 25996] gi|288567697|gb|EFC89257.1| radical SAM domain protein [Neisseria mucosa ATCC 25996] Length = 212 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 97/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ + L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 54 KFGMMSLSDIL---GRLKTYTARNIIITGGEPTIQPHLDTLLDALKAEGYFLCIETNGLK 110 Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K + E+++V V+ + L P Sbjct: 111 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRIVADGDVVAFCENMERKIRARYYYLSP 170 Query: 176 MDGP--FLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 + +T I P W+LSVQTHK+ GI Sbjct: 171 CEQNGAMNIYDTIHQIGILNSRPDAPVHWQLSVQTHKWAGIE 212 >gi|21672674|ref|NP_660741.1| hypothetical protein BUsg401 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091592|sp|Q8K9D9|Y401_BUCAP RecName: Full=Uncharacterized protein BUsg_401 gi|21623312|gb|AAM67952.1| hypothetical 25.0 kDa protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 219 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 100/234 (42%), Gaps = 43/234 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y I EIF T+QGEG + G ++F R GC + C++CDT + Sbjct: 3 YPINEIFQTIQGEGYYTGTPSIFIRLQGCPV-----------HCKWCDTKYTWKCNNEDQ 51 Query: 57 -------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 ++ +++ + ++I I ++ V+TGGEP L + + + L K Sbjct: 52 ISYEKIIMKKKSNRKWSYMNVKEIILIIKIKKW-TAKHIVITGGEPCLYNLLEITKELEK 110 Query: 110 RGFEIAVETNGTIEPPQGI-DWICVSPKAG---CDLKIKGGQELKLVFPQVNVSPENYIG 165 ++ +ET+GT + WI +SPK I E+K +P + Y+ Sbjct: 111 EDYKCQIETSGTELIKCSLNTWITLSPKINKKTLKTSILRSNEIK--YPVLKKEDLFYLN 168 Query: 166 FDFER--------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 ++ LQP+ EE N+ I C WRLSVQ HK++ IR Sbjct: 169 SILKKIKNKKHNLIFLQPISQ--NEEALNICIKTCIIK-NWRLSVQIHKYLKIR 219 >gi|293397670|ref|ZP_06641876.1| conserved hypothetical protein [Neisseria gonorrhoeae F62] gi|291611616|gb|EFF40685.1| conserved hypothetical protein [Neisseria gonorrhoeae F62] Length = 241 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 97/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 42 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 83 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ AL G+ + +ETNG Sbjct: 84 -FGMMSLSDIL---GRLKTYAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLK 139 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K I+ E+++V V + L P Sbjct: 140 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDAVGFCENMERKIRAHHYYLSP 199 Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 DG +T I P W+LSVQTHK+ GI Sbjct: 200 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 241 >gi|325133661|gb|EGC56318.1| radical SAM domain protein [Neisseria meningitidis M13399] gi|325143843|gb|EGC66158.1| radical SAM domain protein [Neisseria meningitidis M01-240013] gi|325206619|gb|ADZ02072.1| radical SAM domain protein [Neisseria meningitidis M04-240196] Length = 212 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 97/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 55 -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K I+ E+++V V+ + L P Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVAFCENMERKIRAHHYYLSP 170 Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 DG +T I P W+LSVQTHK+ GI Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGIE 212 >gi|313203030|ref|YP_004041687.1| radical sam domain protein [Paludibacter propionicigenes WB4] gi|312442346|gb|ADQ78702.1| Radical SAM domain protein [Paludibacter propionicigenes WB4] Length = 209 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 64/218 (29%), Positives = 102/218 (46%), Gaps = 28/218 (12%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 L ++ EIF ++QGEG +AGR AVF R S CN C +CDTD+ +KG Sbjct: 9 LLNVVEIFHSIQGEGANAGRSAVFVRLSNCN-----------KNCWYCDTDW-----SKG 52 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 +V Q+ + + + + TGGEP LQ+ ++ ++ + +ETNGT Sbjct: 53 ETMSVSQILAEVNKFVGKKDYPNNLIIWTGGEPTLQLTDEILSHFSE--YYNCIETNGTN 110 Query: 123 EPPQGIDWICVSPKAGCDL---KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG- 178 P I +I SPK ++ K E + +V P+ + + + P+ Sbjct: 111 PVPSLIKYISCSPKVKPEVLRKNFKHVNEFRYPIGDGDVLPDIAELPAADNYIVSPIFLG 170 Query: 179 ------PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++EN AI + +NP+WRLS+Q HK + I Sbjct: 171 EAKKRFEQVDENVKYAIDFVKKNPRWRLSLQLHKLLNI 208 >gi|123969432|ref|YP_001010290.1| putative organic radical activating protein [Prochlorococcus marinus str. AS9601] gi|123199542|gb|ABM71183.1| possible organic radical activating enzyme [Prochlorococcus marinus str. AS9601] Length = 225 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 103/241 (42%), Gaps = 48/241 (19%) Query: 1 MKL---YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI 57 MK+ + E F +LQGEG HAG+ A F R +GC C +CDT Sbjct: 1 MKMTNFLPLVEQFHSLQGEGYHAGKSAFFVRLAGC-----------KVGCSWCDTKNSWD 49 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------R 110 + ++ + +I+ I +K +CV+TGGEPL +A+ K + Sbjct: 50 E----KKHPSISIEKIIDRIKIARKKGASFCVITGGEPLQHNLDNFCKAIKKMTMGEEQK 105 Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQEL-----------------K 150 +I +ET+G DWI +SPK K +K E+ K Sbjct: 106 PIKIHIETSGVNSISGSYDWITLSPKRHSPPKNYFLKNCNEIKIIINEIEDIEFAIQIKK 165 Query: 151 LVFPQVNVSP-ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209 Q +S E+ + + + F LQP +LAI + NP W+LS+QTHK++ Sbjct: 166 ETLKQHQLSKGEDGLKKEDKIFYLQPA--WNNANGFSLAIDFVKNNPDWKLSLQTHKYLK 223 Query: 210 I 210 I Sbjct: 224 I 224 >gi|91070512|gb|ABE11419.1| putative organic radical activating enzyme [uncultured Prochlorococcus marinus clone HOT0M-3E5] Length = 225 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 103/241 (42%), Gaps = 48/241 (19%) Query: 1 MKL---YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI 57 MK+ + E F +LQGEG HAG+ A F R +GC C +CDT Sbjct: 1 MKMTNFLPLVEQFHSLQGEGYHAGKSAFFIRLAGC-----------KVGCSWCDTKNSWD 49 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------R 110 + ++ + +I+ I +K +CV+TGGEPL +A+ K + Sbjct: 50 E----KKHPSISIEKIIDRIKIARKKGASFCVITGGEPLQHNLDNFCKAIKKMTMGEEQK 105 Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQ----------------ELKL 151 +I +ET+G DWI +SPK K +K ++K Sbjct: 106 PMKIHIETSGVNSISGSYDWITLSPKRHSPPKNYFLKNCNEIKIIINEIEDIEFAIQIKN 165 Query: 152 -VFPQVNVSP-ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209 Q +S E+ + + + F LQP +LAI + NP W+LS+QTHK++ Sbjct: 166 ETLKQYQISKSEDGLKKEDKIFYLQPA--WNNANGFSLAIDFVKNNPDWKLSLQTHKYLK 223 Query: 210 I 210 I Sbjct: 224 I 224 >gi|319409907|emb|CBY90232.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594] Length = 212 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 55 -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K + E+++V ++ + L P Sbjct: 111 PAPPQIDYVATSPKACYAAKYENSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSP 170 Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 DG +T I P W+LSVQTHK+ GI Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGIE 212 >gi|194097763|ref|YP_002000804.1| hypothetical protein NGK_0179 [Neisseria gonorrhoeae NCCP11945] gi|239998266|ref|ZP_04718190.1| hypothetical protein Ngon3_02112 [Neisseria gonorrhoeae 35/02] gi|193933053|gb|ACF28877.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|317163547|gb|ADV07088.1| hypothetical protein NGTW08_0112 [Neisseria gonorrhoeae TCDC-NG08107] Length = 212 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 55 -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLK 110 Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K + E+++V ++ + L P Sbjct: 111 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRIVADGDVLAFCENMERKIRARHYYLSP 170 Query: 176 MD--GPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 + G +T I P W+LSVQTHK+ GI Sbjct: 171 CEQNGVMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212 >gi|32035298|ref|ZP_00135305.1| COG0602: Organic radical activating enzymes [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208571|ref|YP_001053796.1| hypothetical protein APL_1099 [Actinobacillus pleuropneumoniae L20] gi|190150424|ref|YP_001968949.1| hypothetical protein APP7_1155 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303253329|ref|ZP_07339478.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246015|ref|ZP_07528097.1| hypothetical protein appser1_12160 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248119|ref|ZP_07530147.1| hypothetical protein appser2_11000 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250350|ref|ZP_07532299.1| hypothetical protein appser4_11310 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307254996|ref|ZP_07536814.1| hypothetical protein appser9_12300 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259432|ref|ZP_07541157.1| hypothetical protein appser11_12290 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307263767|ref|ZP_07545373.1| hypothetical protein appser13_11780 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126097363|gb|ABN74191.1| hypothetical protein APL_1099 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189915555|gb|ACE61807.1| hypothetical protein APP7_1155 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648011|gb|EFL78218.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306852950|gb|EFM85173.1| hypothetical protein appser1_12160 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855296|gb|EFM87471.1| hypothetical protein appser2_11000 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857625|gb|EFM89732.1| hypothetical protein appser4_11310 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306861869|gb|EFM93845.1| hypothetical protein appser9_12300 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866368|gb|EFM98231.1| hypothetical protein appser11_12290 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306870888|gb|EFN02626.1| hypothetical protein appser13_11780 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 210 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + I EIF +LQGEG + G +F R CNL C +CDT++ + Sbjct: 11 FPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY-----NEYE 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 +++V ++ + ++ + ++TGGEP + ++ L+ G+ +A+ETNG Sbjct: 55 KWSVAKILERVKS------YSAKNIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNGLK 108 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS---PENYIGFDFERFSLQ 174 P+ ID+I SPK K I E+++V + +V + E + L Sbjct: 109 AVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVVDKGDVQSFCEQIETQITAEHYYLS 168 Query: 175 PM--DGP--FLEENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211 P DG LE T L I + PKW+LS+QTHK +GI Sbjct: 169 PCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGIE 210 >gi|121634324|ref|YP_974569.1| hypothetical protein NMC0468 [Neisseria meningitidis FAM18] gi|120866030|emb|CAM09768.1| hypothetical protein NMC0468 [Neisseria meningitidis FAM18] gi|325129656|gb|EGC52471.1| radical SAM domain protein [Neisseria meningitidis OX99.30304] gi|325131671|gb|EGC54376.1| radical SAM domain protein [Neisseria meningitidis M6190] gi|325137687|gb|EGC60264.1| radical SAM domain protein [Neisseria meningitidis ES14902] gi|325141739|gb|EGC64192.1| radical SAM domain protein [Neisseria meningitidis 961-5945] gi|325197741|gb|ADY93197.1| radical SAM domain protein [Neisseria meningitidis G2136] Length = 212 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 97/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGIPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 55 -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K I+ E+++V ++ + L P Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSP 170 Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 DG +T I P W+LSVQTHK+ GI Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGIE 212 >gi|161869455|ref|YP_001598622.1| hypothetical protein NMCC_0466 [Neisseria meningitidis 053442] gi|161595008|gb|ABX72668.1| conserved hypothetical protein [Neisseria meningitidis 053442] Length = 212 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 55 -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K + E+++V ++ + L P Sbjct: 111 PAPPQIDYVATSPKACYAAKYENSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSP 170 Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 DG +T I P W+LSVQTHK+ GI Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212 >gi|268594121|ref|ZP_06128288.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268547510|gb|EEZ42928.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] Length = 240 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 41 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 82 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 83 -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLK 138 Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K + E+++V ++ + L P Sbjct: 139 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRIVADGDVLAFCENMERKIRARHYYLSP 198 Query: 176 MD--GPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 + G +T I P W+LSVQTHK+ GI Sbjct: 199 CEQNGVMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 240 >gi|303250156|ref|ZP_07336358.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252734|ref|ZP_07534625.1| hypothetical protein appser6_12480 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651219|gb|EFL81373.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859766|gb|EFM91788.1| hypothetical protein appser6_12480 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 210 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + I EIF +LQGEG + G +F R CNL C +CDT++ + Sbjct: 11 FPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY-----NEYE 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 +++V ++ + ++ + ++TGGEP + ++ L+ G+ +A+ETNG Sbjct: 55 KWSVAKILERVKS------YSAKNIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNGLK 108 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS---PENYIGFDFERFSLQ 174 P+ ID+I SPK K I E+++V + +V + E + L Sbjct: 109 AVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVMDKGDVQSFCEQIETQITAEHYYLS 168 Query: 175 PM--DGP--FLEENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211 P DG LE T L I + PKW+LS+QTHK +GI Sbjct: 169 PCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGIE 210 >gi|307261578|ref|ZP_07543246.1| hypothetical protein appser12_11390 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868701|gb|EFN00510.1| hypothetical protein appser12_11390 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 210 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + I EIF +LQGEG + G +F R CNL C +CDT++ + Sbjct: 11 FPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY-----NEYE 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++++ ++ + ++ + ++TGGEP + ++ L+ G+ +A+ETNG Sbjct: 55 KWSLAKILERVKS------YSAKNIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNGLK 108 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS---PENYIGFDFERFSLQ 174 P+ ID+I SPK K I E+++V + +V + E + L Sbjct: 109 AVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVVDKGDVQSFCEQIETQITAEHYYLS 168 Query: 175 PM--DGP--FLEENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211 P DG LE T L I + PKW+LS+QTHK +GI Sbjct: 169 PCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGIE 210 >gi|307257150|ref|ZP_07538922.1| hypothetical protein appser10_11500 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864312|gb|EFM96223.1| hypothetical protein appser10_11500 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 210 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + I EIF +LQGEG + G +F R CNL C +CDT++ + Sbjct: 11 FPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY-----NEYE 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 +++V ++ + ++ + ++TGGEP + ++ L+ G+ +A+ETNG Sbjct: 55 KWSVAKILERVKS------YSAKNIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNGLK 108 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS---PENYIGFDFERFSLQ 174 P+ ID+I SPK K I E+++V + +V + E + L Sbjct: 109 AVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVMDKGDVQSFCEQIETQITAEHYYLS 168 Query: 175 PM--DGP--FLEENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211 P DG LE T L I + PKW+LS+QTHK +GI Sbjct: 169 PCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGIE 210 >gi|126697219|ref|YP_001092105.1| putative organic radical activating protein [Prochlorococcus marinus str. MIT 9301] gi|126544262|gb|ABO18504.1| possible organic radical activating enzyme [Prochlorococcus marinus str. MIT 9301] Length = 223 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 98/238 (41%), Gaps = 51/238 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F +LQGEG HAG+ A F R +GC C +CDT + Sbjct: 5 LPLVEQFHSLQGEGYHAGKSAFFVRLAGC-----------KVGCSWCDTKNSWDE----K 49 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGFEIAV 116 +Y + +I+ I EK +CV+TGGEPL +A+ K + +I + Sbjct: 50 KYPSISIEKIIDRIKIAREKGASFCVITGGEPLQHNLDNFCKAIKKMTMGEELKPMKIHI 109 Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQE---------------------LKLV 152 ET+G DWI +SPK K +K E LK Sbjct: 110 ETSGVNSISGSYDWITLSPKRHSPPKSYFLKNCNEIKIIINEIEDIEFAIQIKKETLKQY 169 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 P E+ + + + F LQP +LAI + NP W+LS+QTHK++ I Sbjct: 170 HPS---KSEDGLKKEDKIFYLQPA--WNNANGFSLAIDFVKNNPDWKLSLQTHKYLKI 222 >gi|304388249|ref|ZP_07370369.1| radical SAM domain protein [Neisseria meningitidis ATCC 13091] gi|304337776|gb|EFM03925.1| radical SAM domain protein [Neisseria meningitidis ATCC 13091] Length = 212 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 95/222 (42%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 55 -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K + E+++V V + L P Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIAEADEVRIVADGDVVGFCENMERKIRAHHYYLSP 170 Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 DG +T I P W+LSVQTHK+ GI Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGIE 212 >gi|261492302|ref|ZP_05988864.1| NrdG protein [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495367|ref|ZP_05991816.1| NrdG protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308970|gb|EEY10224.1| NrdG protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311985|gb|EEY13126.1| NrdG protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 208 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 35/221 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + I EIF +LQGEG + G A+F RF CNL C +CDT++ + Sbjct: 10 FPIVEIFESLQGEGFNTGMPAIFVRFGKCNLT-----------CPWCDTNYNQFE----- 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ + + + + ++TGGEP +Q ++ L++ K G+ +A+ETNG Sbjct: 54 QWTLSDILAKVRS------YSAKNVIITGGEPTIQPNLSLLLEQFKKEGYFLAIETNGLK 107 Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQ--VNVSPENYIGFDFERFSLQP 175 E P ID+I SPK K + E+++V + E + L P Sbjct: 108 EVPAQIDYIATSPKRMYQEKYQRRCIEFANEVRIVVDGEVQGFCEQIESQIKAEHYYLSP 167 Query: 176 MDGP----FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211 + LE T + ++ PKW+LS+QTHK +GI Sbjct: 168 CEVEGKMNLLETITQIGLLNQRPNKPKWQLSIQTHKIVGIE 208 >gi|15676436|ref|NP_273574.1| hypothetical protein NMB0529 [Neisseria meningitidis MC58] gi|7225754|gb|AAF40959.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|316985383|gb|EFV64331.1| radical SAM superfamily protein [Neisseria meningitidis H44/76] gi|325139736|gb|EGC62270.1| radical SAM domain protein [Neisseria meningitidis CU385] gi|325200783|gb|ADY96238.1| radical SAM domain protein [Neisseria meningitidis H44/76] Length = 212 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 55 -FGMMGLSDIL---GRLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K + E+++V ++ + L P Sbjct: 111 PAPPQIDYVATSPKACYAAKYENSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSP 170 Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 DG +T I P W+LSVQTHK+ GI Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGIE 212 >gi|87300560|ref|ZP_01083402.1| possible organic radical activating enzyme [Synechococcus sp. WH 5701] gi|87284431|gb|EAQ76383.1| possible organic radical activating enzyme [Synechococcus sp. WH 5701] Length = 218 Score = 194 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 37/228 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F +LQGEG HAGR A F R +GC S C +CDT Sbjct: 8 LPVVETFHSLQGEGVHAGRSAFFIRLAGC-----------SVGCSWCDTKHSW----PAD 52 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK---RG---FEIAVE 117 + + + DL + + + V+TGGEPL PL +AL + G + +E Sbjct: 53 AHPLCRFQDLAASAALAAAEGAAFVVITGGEPLHHNLDPLCEALRQGSGAGPSPLPLHLE 112 Query: 118 TNGTIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQ-----------VNVSPENY 163 T+G +WI +SPK + ELK+V + V Sbjct: 113 TSGVDPLSGRFEWITLSPKRHRPPTAELLAACHELKVVIHEIADLAFAETMAAAVRSACP 172 Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + + LQP G LA+ + +NP WRLS+Q+HK++G+R Sbjct: 173 VKGALPQLLLQP--GWGSAAGQELAVQHVRRNPAWRLSLQSHKWLGVR 218 >gi|254669979|emb|CBA04660.1| conserved hypothetical protein [Neisseria meningitidis alpha153] Length = 212 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 36/222 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF +LQGEG + G AVF R CNL C +CDTD++ Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + + L+D++ R ++TGGEP +Q + L+ L G+ + +ETNG Sbjct: 55 -FGMMGLSDIL---GRLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110 Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175 P ID++ SPKA K + E+++V ++ + L P Sbjct: 111 PAPPQIDYVATSPKACYAAKYENSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSP 170 Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211 DG +T I P W+LSVQTHK+ GI Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212 >gi|322514966|ref|ZP_08067979.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Actinobacillus ureae ATCC 25976] gi|322119074|gb|EFX91234.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Actinobacillus ureae ATCC 25976] Length = 210 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 103/221 (46%), Gaps = 36/221 (16%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF +LQGEG + G +F R CNL C +CDT++ + + Sbjct: 12 PIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY-----NEYEK 55 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 +NV ++ + ++ + ++TGGEP + ++ L+ G+ +A+ETNG Sbjct: 56 WNVAKILERVKS------YSAKNIIITGGEPTMYANLSVLLDVFKVEGYWLAIETNGLKA 109 Query: 124 PPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS---PENYIGFDFERFSLQP 175 P+ ID+I SPK K I E+++V + +V + E + L P Sbjct: 110 VPKQIDYIATSPKLMYQEKYLRECIPFANEVRIVMDKGDVQGFCEQIETQITAEHYYLSP 169 Query: 176 M--DGP--FLEENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211 DG LE T L I + PKW+LS+QTHK +GI Sbjct: 170 CEVDGKMNLLETITQLGILNQRANKPKWQLSLQTHKLVGIE 210 >gi|220926065|ref|YP_002501367.1| radical SAM domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219950672|gb|ACL61064.1| Radical SAM domain protein [Methylobacterium nodulans ORS 2060] Length = 230 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 70/253 (27%), Positives = 97/253 (38%), Gaps = 65/253 (25%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI--- 57 M ++++ EIF T QGE G +VF R GC + C FCDT Sbjct: 1 MTVFAVNEIFETFQGEAAFTGTPSVFVRLQGCPV-----------GCAFCDTKMTWHVRP 49 Query: 58 --------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103 R + + LA L+ GE R+ V TGGEP L + Sbjct: 50 EHEIEVGAMIAKTEDAPTWARLHDEDLAMLV------GEFRARHVVFTGGEPALYDLTEV 103 Query: 104 IQALNKRGFEIAVETNGTIEPPQGID---WICVSPKAGCDLKIK-------GGQELKLVF 153 + L +G + +ET+GT ID W+ VSPK +K E+K+ Sbjct: 104 SRRLIDQGRTVQLETSGT--ALIRIDPHAWVTVSPKIDMPGGLKVLPAAVARANEIKMPI 161 Query: 154 PQVNVSPENYIGFDFER---------------FSLQPMDGPFLEENTNLAISYCFQNPKW 198 + E F E LQP+ E+ T L + N W Sbjct: 162 GKP-ADIEKLQAFLAEHPAVGVAYTGSGPALLIWLQPLSQS--EKATALCMEAAAAN-GW 217 Query: 199 RLSVQTHKFIGIR 211 RLS+QTHKF+G+R Sbjct: 218 RLSLQTHKFVGVR 230 >gi|33241303|ref|NP_876245.1| putative organic radical activating protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238833|gb|AAQ00898.1| Radical activating enzyme [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 225 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 95/241 (39%), Gaps = 48/241 (19%) Query: 1 MKL-YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M I E F +LQGEG H G+ A F R GC C +CDT + Sbjct: 1 MSTCLPIVERFHSLQGEGLHFGKSAFFIRLGGC-----------KVGCPWCDTK----ES 45 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGF 112 + + +L +E I + V+TGGEPL L + + Sbjct: 46 WSIATHQEATVEELSKEAAIAQSQGAAILVITGGEPLHHNLNALCKTIQDFTSHNSRETM 105 Query: 113 EIAVETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQ-------------- 155 I +ET+G E I+WI +SPK K ++ E+K+V Q Sbjct: 106 PIHLETSGVDEITGLINWITLSPKRHALPKKSLLRACDEIKVVIHQKEDLLFAEEMANQS 165 Query: 156 ------VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209 + + LQP G +E T L I Y +P+WRLS+QTHK++G Sbjct: 166 IKERQISKKTSDENHKISQPHLFLQP--GWNSKEGTQLTIEYIKSHPQWRLSLQTHKWLG 223 Query: 210 I 210 + Sbjct: 224 V 224 >gi|33862246|ref|NP_893807.1| putative organic radical activating protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634464|emb|CAE20149.1| possible organic radical activating enzyme [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 223 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 104/237 (43%), Gaps = 47/237 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F +LQGEG H G+ A F R +GC S C +CDT + Sbjct: 5 LPLVEKFHSLQGEGFHTGQSAFFIRLAGC-----------SVGCSWCDTKHSWDK----E 49 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-------GFEIAV 116 +Y + + +I+E +K + V+TGGEPL L QA+NK +I + Sbjct: 50 KYPLIPIKKIIDEIKKARKKGASFLVITGGEPLHHNLDNLCQAINKETSEKDQNPIKIHI 109 Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFP------------------- 154 ET+G + DWI +SPK K ++ ELK++ Sbjct: 110 ETSGVNKMSGNYDWITLSPKRHLPPKTYFLENFNELKIIINDKKDIDFAIDIKQEIMNKY 169 Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 Q S +N+ D +++ +QP +L I + NP+W LS+QTHK++ I+ Sbjct: 170 QNLSSKDNFYKLD-KKYYVQPA--WENARGFSLTIDFVKNNPEWNLSLQTHKYLKIK 223 >gi|145627830|ref|ZP_01783631.1| predicted methyltransferase [Haemophilus influenzae 22.1-21] gi|144979605|gb|EDJ89264.1| predicted methyltransferase [Haemophilus influenzae 22.1-21] Length = 217 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 104/221 (47%), Gaps = 35/221 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 ++I EIF +LQGEG + G +VF RF CNL C +CDT + + Sbjct: 19 FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 R++V Q+ + + + ++TGGEP + + L++ G+ +A+ETNG Sbjct: 63 RWSVSQILEKVRS------FSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 116 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175 P ID+I SPK+ K I E+++V S I + + L P Sbjct: 117 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 176 Query: 176 --MDGP--FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211 +DG LE T L ++ PKW+LS+QTHK IGI Sbjct: 177 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGIE 217 >gi|317968277|ref|ZP_07969667.1| organic radical activating protein [Synechococcus sp. CB0205] Length = 209 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 63/215 (29%), Positives = 90/215 (41%), Gaps = 24/215 (11%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F +LQGEG HAGR A F R GC C +CDT Sbjct: 12 LPVVETFHSLQGEGLHAGRSAFFIRLGGC-----------RVGCSWCDTKHSW----PAE 56 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTI 122 + L +L + VLTGGEPL L A+ + I +ET+G Sbjct: 57 VHPQQSLEELALACAEAASAGAAFVVLTGGEPLHHNLDALSAAIRQHCSLPIHLETSGVD 116 Query: 123 EPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVN---VSPENYIGFDFERFSLQPM 176 DWI +SPK + ++ ELK+V + + + + LQP Sbjct: 117 PLTGSPDWISLSPKRHQPPRAELLQRCDELKVVVHEAADLLFAEVSASQAPQATWLLQP- 175 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 G E LA+ + P+WRLS+Q+HK++G+R Sbjct: 176 -GWDCREGQALALEFVQSQPRWRLSLQSHKWLGVR 209 >gi|301169927|emb|CBW29531.1| predicted organic radical activating enzyme [Haemophilus influenzae 10810] Length = 209 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 104/221 (47%), Gaps = 35/221 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 ++I EIF +LQGEG + G +VF RF CNL C +CDT + + Sbjct: 11 FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 R++V Q+ + + + ++TGGEP + + L++ G+ +A+ETNG Sbjct: 55 RWSVSQILEKVRS------FSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 108 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175 P ID+I SPK+ K I E+++V S I + + L P Sbjct: 109 AIPAQIDYISTSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 168 Query: 176 --MDGP--FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211 +DG LE T L ++ PKW+LS+QTHK IGI Sbjct: 169 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGIE 209 >gi|294787822|ref|ZP_06753066.1| radical SAM domain protein [Simonsiella muelleri ATCC 29453] gi|294484115|gb|EFG31798.1| radical SAM domain protein [Simonsiella muelleri ATCC 29453] Length = 205 Score = 191 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 100/223 (44%), Gaps = 40/223 (17%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + I EIF TLQGEG + G +VF RF CNL C +CDT++ Sbjct: 6 FRIVEIFETLQGEGYNTGMPSVFIRFGKCNL-----------ACHWCDTNY--------Q 46 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ + L ++++ + + + ++TGGEP +Q + L+ L G+ IA+ETNG Sbjct: 47 QFEMMTLTQIMDQVY---DYSAKNIIITGGEPTIQPQLEILLNRLKSEGYFIAIETNGLR 103 Query: 123 EPPQGIDWICVSPKAGC-----DLKIKGGQELKLVFPQVNVSPENYI---GFDFERFSLQ 174 P+ ID+I SPK + E+++V ++ I +R+ L Sbjct: 104 AVPEQIDYIATSPKRLYANAYDKTCLSAADEVRIVVDSDDIFSFCEIIEQKIRAKRYYLS 163 Query: 175 PMDGPFLEENTNLAISYCF-------QNPKWRLSVQTHKFIGI 210 P + E LA P W+LS+QTHK GI Sbjct: 164 PCEQ--NGEMNILATITLLGKLNARPNQPHWQLSIQTHKLCGI 204 >gi|319776568|ref|YP_004139056.1| methyltransferase [Haemophilus influenzae F3047] gi|317451159|emb|CBY87392.1| Predicted methyltransferase [Haemophilus influenzae F3047] Length = 209 Score = 191 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 105/221 (47%), Gaps = 35/221 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 ++I EIF +LQGEG + G +VF RF CNL C +CDT + + Sbjct: 11 FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 R++V Q+ + + + ++TGGEP + ++ L++ G+ +A+ETNG Sbjct: 55 RWSVSQILEKVRS------FSSKNIIITGGEPTIVPEIEYLLEQFKSDGYFLAIETNGLK 108 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175 P ID+I SPK+ K I E+++V S I + + L P Sbjct: 109 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 168 Query: 176 --MDGP--FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211 +DG LE T L ++ PKW+LS+QTHK IGI Sbjct: 169 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGIE 209 >gi|145639292|ref|ZP_01794898.1| predicted methyltransferase [Haemophilus influenzae PittII] gi|145271595|gb|EDK11506.1| predicted methyltransferase [Haemophilus influenzae PittII] gi|309751168|gb|ADO81152.1| Probable 7-cyano-7-deazaguanine (preQ0) synthesis protein QueE [Haemophilus influenzae R2866] Length = 211 Score = 191 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 104/221 (47%), Gaps = 35/221 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 ++I EIF +LQGEG + G +VF RF CNL C +CDT + + Sbjct: 13 FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 56 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 R++V Q+ + + + ++TGGEP + + L++ G+ +A+ETNG Sbjct: 57 RWSVSQILEKVRS------FSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175 P ID+I SPK+ K I E+++V S I + + L P Sbjct: 111 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 170 Query: 176 --MDGP--FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211 +DG LE T L ++ PKW+LS+QTHK IGI Sbjct: 171 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGIE 211 >gi|15602049|ref|NP_245121.1| hypothetical protein PM0184 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720404|gb|AAK02268.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 209 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 103/221 (46%), Gaps = 35/221 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y+I EIF +LQGEG + G ++F RF CNL C +CDT + Sbjct: 11 YAIVEIFESLQGEGFNTGMPSIFVRFGKCNL-----------ACPWCDTPY--------N 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 +Y L+ ++++ + ++TGGEP + + L+ AL G+ +A+ETNG Sbjct: 52 QYTTWTLSKIVQK---VRSFSAKNIIITGGEPTIVPKIGVLLDALKAEGYFLAIETNGLK 108 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175 P ID+I SPK K I E+++V + ++ I + + L P Sbjct: 109 SIPNQIDYIATSPKRLYQHKYQQKCIPFAHEVRIVADENVIAFCEQIEQQIRADHYYLSP 168 Query: 176 MDG----PFLEENTNLA-ISYCFQNPKWRLSVQTHKFIGIR 211 + LE T + ++ PKW+LS+QTHK IGI Sbjct: 169 CEVNGEMNLLETITQIGRLNQRVNKPKWQLSIQTHKLIGIE 209 >gi|188995161|ref|YP_001929413.1| hypothetical protein PGN_1297 [Porphyromonas gingivalis ATCC 33277] gi|188594841|dbj|BAG33816.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC 33277] Length = 197 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 67/216 (31%), Positives = 96/216 (44%), Gaps = 33/216 (15%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGEG + GR AVF R +GCNL C +CDTDF G + Sbjct: 3 INEIFHSLQGEGANTGRAAVFVRLAGCNL-----------ACPYCDTDFAQ-----GKKM 46 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 +++++A IE R+ + TGGEP LQ+ ++ G+ A+ETNGT P Sbjct: 47 SLEEIARSIE------HYPTRFLIWTGGEPTLQLTEEATAYFHRLGYYQAIETNGTRLVP 100 Query: 126 QGIDWICVSPKAGCDLKIK-----GGQELKLVF-PQVNVSPENYIGFDFERFSLQPMDGP 179 +GID+I SPK K+K G E + + P + + + P+ Sbjct: 101 KGIDYISCSPKPEAIGKLKENFPDGVGEFRFPLGSDTPLPPPIDELPTAQHYLVSPIFAG 160 Query: 180 F-----LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + P W LS+Q HK I I Sbjct: 161 DDAMEPDPSAITRCVEFVKAFPAWCLSIQMHKLIHI 196 >gi|16273111|ref|NP_439345.1| hypothetical protein HI1189 [Haemophilus influenzae Rd KW20] gi|68249735|ref|YP_248847.1| organic radical activating protein [Haemophilus influenzae 86-028NP] gi|148826202|ref|YP_001290955.1| organic radical activating protein [Haemophilus influenzae PittEE] gi|229844856|ref|ZP_04464994.1| predicted organic radical activating enzyme [Haemophilus influenzae 6P18H1] gi|229846220|ref|ZP_04466332.1| predicted organic radical activating enzyme [Haemophilus influenzae 7P49H1] gi|260581110|ref|ZP_05848931.1| organic radical activating protein [Haemophilus influenzae RdAW] gi|260582119|ref|ZP_05849913.1| organic radical activating protein [Haemophilus influenzae NT127] gi|329124080|ref|ZP_08252627.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Haemophilus aegyptius ATCC 11116] gi|1723816|sp|P45097|Y1189_HAEIN RecName: Full=7-carboxy-7-deazaguanine synthase homolog gi|1574116|gb|AAC22842.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|68057934|gb|AAX88187.1| predicted organic radical activating enzyme [Haemophilus influenzae 86-028NP] gi|148716362|gb|ABQ98572.1| predicted organic radical activating enzyme [Haemophilus influenzae PittEE] gi|229811224|gb|EEP46941.1| predicted organic radical activating enzyme [Haemophilus influenzae 7P49H1] gi|229812237|gb|EEP47928.1| predicted organic radical activating enzyme [Haemophilus influenzae 6P18H1] gi|260092239|gb|EEW76181.1| organic radical activating protein [Haemophilus influenzae RdAW] gi|260094751|gb|EEW78645.1| organic radical activating protein [Haemophilus influenzae NT127] gi|309973347|gb|ADO96548.1| Probable 7-cyano-7-deazaguanine (preQ0) synthesis protein QueE [Haemophilus influenzae R2846] gi|327467505|gb|EGF13003.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Haemophilus aegyptius ATCC 11116] Length = 211 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 104/221 (47%), Gaps = 35/221 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 ++I EIF +LQGEG + G +VF RF CNL C +CDT + + Sbjct: 13 FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 56 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 R++V Q+ + + + ++TGGEP + + L++ G+ +A+ETNG Sbjct: 57 RWSVSQILEKVRS------FSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175 P ID+I SPK+ K I E+++V S I + + L P Sbjct: 111 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 170 Query: 176 --MDGP--FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211 +DG LE T L ++ PKW+LS+QTHK IGI Sbjct: 171 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGIE 211 >gi|145633081|ref|ZP_01788813.1| predicted methyltransferase [Haemophilus influenzae 3655] gi|145637058|ref|ZP_01792721.1| predicted methyltransferase [Haemophilus influenzae PittHH] gi|319897344|ref|YP_004135540.1| methyltransferase [Haemophilus influenzae F3031] gi|144986307|gb|EDJ92886.1| predicted methyltransferase [Haemophilus influenzae 3655] gi|145269712|gb|EDK09652.1| predicted methyltransferase [Haemophilus influenzae PittHH] gi|317432849|emb|CBY81214.1| Predicted methyltransferase [Haemophilus influenzae F3031] Length = 209 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 104/221 (47%), Gaps = 35/221 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 ++I EIF +LQGEG + G +VF RF CNL C +CDT + + Sbjct: 11 FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 R++V Q+ + + + ++TGGEP + + L++ G+ +A+ETNG Sbjct: 55 RWSVSQILEKVRS------FSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 108 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175 P ID+I SPK+ K I E+++V S I + + L P Sbjct: 109 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 168 Query: 176 --MDGP--FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211 +DG LE T L ++ PKW+LS+QTHK IGI Sbjct: 169 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGIE 209 >gi|72536298|gb|AAZ73210.1| hypothetical protein [Escherichia coli] Length = 202 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 56/219 (25%), Positives = 81/219 (36%), Gaps = 49/219 (22%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-----------------QGTKGGRY 65 A+F R GC + C +CDT + K G Sbjct: 1 PAIFIRLQGCPV-----------GCDWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAA 49 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 + + L +I Q R+ V+TGGEP + +PL L K GF +ET+GT E Sbjct: 50 SSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVR 105 Query: 126 QGI-DWICVSPKAGC-------DLKIKGGQELKL------VFPQVNVSPENYIGFDFERF 171 W+ VSPK ++ E+K ++ Sbjct: 106 CTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVI 165 Query: 172 SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 166 ALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 201 >gi|145631238|ref|ZP_01787011.1| predicted organic radical activating enzyme [Haemophilus influenzae R3021] gi|144983165|gb|EDJ90660.1| predicted organic radical activating enzyme [Haemophilus influenzae R3021] Length = 211 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 104/221 (47%), Gaps = 35/221 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 ++I EIF +LQGEG + G +VF RF CNL C +CDT + + Sbjct: 13 FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 56 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 R++V Q+ + + + ++TGGEP + + L++ G+ +A+ETNG Sbjct: 57 RWSVSQILEKVRS------FSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 110 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175 P ID+I SPK+ K I E+++V S I + + L P Sbjct: 111 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 170 Query: 176 --MDGP--FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211 +DG LE T L ++ PKW+LS+QTHK IGI Sbjct: 171 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGIE 211 >gi|330431519|gb|AEC16578.1| molybdenum cofactor biosynthesis protein A [Gallibacterium anatis UMN179] Length = 203 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 100/225 (44%), Gaps = 43/225 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y+I EIF +LQGEG + G AVF RF CNL C +CDTD+ Sbjct: 5 YAIVEIFESLQGEGFNTGMPAVFIRFGKCNL-----------ACPWCDTDYQTF-----S 48 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + Q+AD + + ++TGGEP +Q ++ L+ G+ +++ETNG Sbjct: 49 LMTLQQIADQVTA------FSAKNIIITGGEPTIQPNLEKLLSYFKTLGYFLSIETNGLK 102 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS---PENYIGFDFERFSLQ 174 P ID+I SPK K I E+++V N+ E + + + L Sbjct: 103 PVPPQIDYIATSPKRLYRHKYQQRCITHADEVRIVNDDENILSFCREIAKKIEAKHYFLS 162 Query: 175 PMDGPFLEENTNLAISYCFQ--------NPKWRLSVQTHKFIGIR 211 P + E N + + + KW+LS+QTHK +GI Sbjct: 163 PCEQ-QGEMNL---LDTIRKLGQLNENTDIKWQLSIQTHKLVGIE 203 >gi|260914430|ref|ZP_05920899.1| radical SAM domain protein [Pasteurella dagmatis ATCC 43325] gi|260631531|gb|EEX49713.1| radical SAM domain protein [Pasteurella dagmatis ATCC 43325] Length = 209 Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 103/221 (46%), Gaps = 35/221 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y+I EIF +LQGEG + G ++F RF CNL C +CDT++ Sbjct: 11 YNIVEIFESLQGEGFNTGMPSIFVRFGKCNL-----------ACPWCDTNY--------N 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 +Y L+ ++++ + ++TGGEP + + L+ L G+ +A+ETNG Sbjct: 52 QYTTWSLSQILQK---VRSFSAKNIIITGGEPTIVPKIEYLLDTLKAEGYFLAIETNGLK 108 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175 P ID+I SPK K I E+++V + S I +R+ L P Sbjct: 109 TIPSQIDYIATSPKRLYQHKYQQKCIPFANEVRIVADEDVFSFCEQIEQQIHADRYYLSP 168 Query: 176 MDG----PFLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211 + LE T + ++ PKW+LS+QTHK IGI Sbjct: 169 CEIDGEMNLLETITQIGLLNQRVNKPKWQLSIQTHKLIGIE 209 >gi|148243542|ref|YP_001228699.1| organic radical activating protein [Synechococcus sp. RCC307] gi|147851852|emb|CAK29346.1| Organic radical activating enzyme [Synechococcus sp. RCC307] Length = 202 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 63/219 (28%), Positives = 91/219 (41%), Gaps = 25/219 (11%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + E F +LQGEG HAGR A F R GC + C +CDT Q Sbjct: 1 MSSLPVVETFHSLQGEGLHAGRSAFFIRLGGC-----------TVGCSWCDTKHSWPQTA 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI--AVET 118 + + L E ++ + V+TGGEPL QAL + + +ET Sbjct: 50 ----HPALETQALAAEAAEAQQQGAAFVVITGGEPLHHNLDGFCQALAEMAPTLPRHLET 105 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKG---GQELKLVFP---QVNVSPENYIGFDFERFS 172 +G WI +SPKA + ELK V + + + Sbjct: 106 SGVDPLSGSFSWITLSPKAHKPPTQELLACCDELKAVVHGPEDLAFAEAMAAQAPQAHWL 165 Query: 173 LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 LQP G + LA+ + +P WRLS+Q+HK++G+R Sbjct: 166 LQP--GWDSPQGQQLAVEFVRNHPLWRLSLQSHKWLGVR 202 >gi|33151750|ref|NP_873103.1| hypothetical protein HD0556 [Haemophilus ducreyi 35000HP] gi|33147971|gb|AAP95492.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 209 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 62/218 (28%), Positives = 96/218 (44%), Gaps = 35/218 (16%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66 EIF +LQGEG + G +F R CNL C +CDT++ Q ++ Sbjct: 14 VEIFESLQGEGFNTGLPCIFIRLGKCNL-----------ACPWCDTNYNEYQ-----KWT 57 Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPP 125 ++ + ++ + ++TGGEP L ++ L++ L G+ +A+ETNG P Sbjct: 58 LEMILAKVKS------YTAKNIIITGGEPTLYANLTILLEQLKNAGYWLAIETNGLKAVP 111 Query: 126 QGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPENYI--GFDFERFSLQPMDG 178 ID+I SPK K + E+++V I + L P + Sbjct: 112 SQIDYIATSPKKMYQEKYQREYLTQADEVRIVVDDDVTEFCALIEQKIQAHHYYLSPCEI 171 Query: 179 P----FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211 LE T L ++ PKW+LS+QTHK IGI Sbjct: 172 EGKMNLLETITQLGQLNQRVNKPKWQLSIQTHKIIGIE 209 >gi|251792175|ref|YP_003006895.1| NrdG protein [Aggregatibacter aphrophilus NJ8700] gi|247533562|gb|ACS96808.1| NrdG protein [Aggregatibacter aphrophilus NJ8700] Length = 209 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 68/220 (30%), Positives = 101/220 (45%), Gaps = 35/220 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y+I EIF +LQGEG + G ++F RF CNL C +CDT++ Sbjct: 11 YNIVEIFESLQGEGFNTGMPSIFVRFGKCNL-----------ACPWCDTNY--------N 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ LA ++EE + ++TGGEP + ++ L+ + G+ +A+ETNG Sbjct: 52 QFERMTLAQIMEE---VRSFSAKNIIITGGEPTIVPNIELLLNQMKSEGYFLAIETNGLK 108 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQV--NVSPENYIGFDFERFSLQP 175 P ID+I SPK K I+ E+++V + R+ L P Sbjct: 109 PIPTQIDYIATSPKRLYQHKYEQRCIEFADEVRIVADGDVSDFCALIEENIQATRYYLSP 168 Query: 176 MDG----PFLEENTNL-AISYCFQNPKWRLSVQTHKFIGI 210 + LE T L ++ PKW LSVQTHK IGI Sbjct: 169 CEINGKMNLLETITQLGLLNQRPNKPKWLLSVQTHKLIGI 208 >gi|157414296|ref|YP_001485162.1| putative organic radical activating protein [Prochlorococcus marinus str. MIT 9215] gi|157388871|gb|ABV51576.1| possible organic radical activating enzyme [Prochlorococcus marinus str. MIT 9215] Length = 223 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 102/240 (42%), Gaps = 46/240 (19%) Query: 1 MKLY-SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M Y I E F +LQGEG HAG+ A F R +GC C +CDT + Sbjct: 1 MTNYLPIVEQFHSLQGEGYHAGKSAFFVRLAGC-----------KVGCSWCDTKNSWDE- 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGF 112 +Y + +I+ I +K +CV+TGGEPL +A+ K Sbjct: 49 ---KKYPSISIKKIIDRIKIARDKGASFCVITGGEPLQHNLDNFCKAIKKMTMREEQNSM 105 Query: 113 EIAVETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQEL-----------------KLV 152 +I +ET+G DW+ +SPK K +K E+ K Sbjct: 106 KIHIETSGVNSISGSYDWMTLSPKRHSPPKNYFLKKCNEIKIIINDIKDIEFAIQIKKET 165 Query: 153 FPQVNVSP-ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 Q +S E+ + + + F LQP +LAI + NP W+LS+QTHK++ I+ Sbjct: 166 LKQYQLSKSEDGLKKEDKIFYLQPA--WNNANGLSLAIDFVKNNPDWKLSLQTHKYLKIK 223 >gi|325291195|ref|YP_004267376.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324966596|gb|ADY57375.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 203 Score = 187 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 63/221 (28%), Positives = 92/221 (41%), Gaps = 36/221 (16%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 K Y + EIF ++QGEG G A F R CNL +C +CD+ K Sbjct: 8 KEYPVHEIFDSIQGEGYWTGAAASFVRLQQCNL-----------RCAWCDSKGTWEG--K 54 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + D++ + +LTGGEPLL L+++L G ++ +ETNGT Sbjct: 55 PEKMTADEILAAV---------HSERVILTGGEPLLHDLTALLESLKAAGKKVHIETNGT 105 Query: 122 IEPPQGI---DWICVSPKAGCDLKIK-----GGQELKLVFPQVNVSPENYIGFDF---ER 170 + WI VSPK ++ E K V + + S + +F Sbjct: 106 QPWKESYPQEAWITVSPKKESGYLVQPSIKSKANEYKFVVDE-DFSADILAQLEFNSCPN 164 Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 L P + E A+S Q P RL++Q HK IG+R Sbjct: 165 IFLSPEN--VRSEMIKKALSIVAQYPFCRLTLQLHKLIGVR 203 >gi|319779040|ref|YP_004129953.1| Queuosine Biosynthesis QueE Radical SAM [Taylorella equigenitalis MCE9] gi|317109064|gb|ADU91810.1| Queuosine Biosynthesis QueE Radical SAM [Taylorella equigenitalis MCE9] Length = 222 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 107/228 (46%), Gaps = 43/228 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + I EIF +LQGEG + G A F R CNL C +CDT++ G Sbjct: 18 FRIVEIFKSLQGEGFNTGMPATFVRLGRCNL-----------ACGWCDTNYNSF-----G 61 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ ++ ++E+ + +LTGGEP + +V LI+A RG+ + +ETNG Sbjct: 62 LKSLSEILQIVEDLGQS------NIILTGGEPSVHPNVELLIEAFKSRGYYLCIETNGIS 115 Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--------GFDFE 169 + P+GID+I +SPK + ++ E+++V + E+++ F+ + Sbjct: 116 DVPEGIDYIAISPKYCYKERYEKVGLRYADEIRIVVDFNETNREDFLNWLQDINEKFNSK 175 Query: 170 RFSLQPMDGPFLEENTNLAISYC------FQNPKWRLSVQTHKFIGIR 211 ++ L P++ N I P+W LS+QTHK GI Sbjct: 176 KYYLSPLE-HDGSMNIQQTIKIIGELNGLKIGPRWELSLQTHKLAGIE 222 >gi|167856373|ref|ZP_02479100.1| hypothetical protein HPS_10855 [Haemophilus parasuis 29755] gi|167852511|gb|EDS23798.1| hypothetical protein HPS_10855 [Haemophilus parasuis 29755] Length = 204 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 101/221 (45%), Gaps = 35/221 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I EIF TLQGEG + G ++F RF CNL C +CDT++ Sbjct: 6 YRIVEIFETLQGEGFNTGMPSIFIRFGKCNL-----------ACPWCDTNY--------N 46 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTI 122 +Y LAD+++ + + ++TGGEP +Q L+ L G+ IA+ETNG Sbjct: 47 QYETKTLADIMQ---VVKGFSAKNIIITGGEPTIQLDLTYLLDTLKAEGYFIAIETNGLK 103 Query: 123 EPPQGIDWICVSPKA-----GCDLKIKGGQELKLVFPQVNVSPENYIG--FDFERFSLQP 175 P ID+I SPK I E+++V ++ I ER+ L P Sbjct: 104 PVPPQIDYIATSPKRLYQKNYLKHHIPFANEVRIVVDGDVLAFCEQIESTIKAERYYLSP 163 Query: 176 MDG----PFLEENTNLA-ISYCFQNPKWRLSVQTHKFIGIR 211 + LE T L ++ P+W+LS+QTHK GI Sbjct: 164 CEENGVMNMLETITQLGKLNQRPNKPRWQLSIQTHKMAGIE 204 >gi|254526725|ref|ZP_05138777.1| radical activating enzyme [Prochlorococcus marinus str. MIT 9202] gi|221538149|gb|EEE40602.1| radical activating enzyme [Prochlorococcus marinus str. MIT 9202] Length = 227 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 67/236 (28%), Positives = 100/236 (42%), Gaps = 45/236 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I E F +LQGEG HAG+ A F R +GC C +CDT + Sbjct: 9 LPIVEQFHSLQGEGYHAGKSAFFVRLAGC-----------KVGCSWCDTKNSWDE----K 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGFEIAV 116 +Y + +I+ I +K +CV+TGGEPL +A+ K +I + Sbjct: 54 KYPSISIKKIIDRIKIARDKGASFCVITGGEPLQHNLDNFCKAIKKMTMREEQNSMKIHI 113 Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQEL-----------------KLVFPQV 156 ET+G DW+ +SPK K +K E+ K Q Sbjct: 114 ETSGVNSISGSYDWMTLSPKRHSPPKNYFLKNCNEIKIIINDIKDIEFAIQIKKETLKQY 173 Query: 157 NVSP-ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +S E+ + + + F LQP +LAI + NP W+LS+QTHK++ I+ Sbjct: 174 QLSKSEDGLKREDKIFYLQPA--WNNSNGLSLAIDFVKNNPDWKLSLQTHKYLKIK 227 >gi|268680497|ref|YP_003304928.1| radical SAM protein [Sulfurospirillum deleyianum DSM 6946] gi|268618528|gb|ACZ12893.1| Radical SAM domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 192 Score = 185 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 91/212 (42%), Gaps = 23/212 (10%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + E+F ++QGEG G ++F R GCNL C FCD + + Sbjct: 1 MLKVVEMFYSIQGEGTQVGVPSIFIRLYGCNL-----------SCSFCDEE---LHKGAY 46 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG-T 121 + D + + I+ ++TGGEP + I L + ++VETNG Sbjct: 47 EELSFDAVLERIKA------YPSMNVIITGGEPSIYDLNGFIDFLQAHMYAVSVETNGYN 100 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF- 180 +WI SPK + G E+K + + + + ++ +QP + Sbjct: 101 FSNIASANWITYSPKDWNHIAKHGYDEVKFIVSKDSDVSKLLDFKSYKPLFIQPQNNAHT 160 Query: 181 -LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +EN I++ NP++ LSVQ HKF+G+ Sbjct: 161 PNQENLAFCIAFVKANPRFILSVQLHKFLGVE 192 >gi|186474664|ref|YP_001863635.1| hypothetical protein Bphy_7690 [Burkholderia phymatum STM815] gi|184198623|gb|ACC76585.1| conserved hypothetical protein [Burkholderia phymatum STM815] Length = 235 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 95/240 (39%), Gaps = 52/240 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 Y + EIF +LQGEG G +VF R GC + C +CD+ Sbjct: 16 YPVNEIFESLQGEGNFTGTPSVFVRLQGCPV-----------GCAWCDSKHTWQVMPERE 64 Query: 57 ----IQGTKGGRY-------NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 G K GR +V LA+++ + + V+TGGEP + PLI Sbjct: 65 ISVGAMGEKTGRPCDSYAWCDVPTLANIVRAA------DAEHVVITGGEPCMYDLRPLIA 118 Query: 106 ALNKRGFEIAVETNGT-IEPPQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ-- 155 L + VET+GT + ++ SPK G D ++ E+K + Sbjct: 119 KLQAWHHRVQVETSGTYVPLVTPSTFVTTSPKYGMPSGRPVLDEALERANEIKYPVGKQR 178 Query: 156 -VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +++ E R LQP+ T + + WR+S+QT+KFI IR Sbjct: 179 DIDIVLERLDPIQRARGTPIWLQPLS--LSSRATGICMK-AAHRYGWRVSLQTNKFINIR 235 >gi|157964748|ref|YP_001499572.1| organic radical activating protein [Rickettsia massiliae MTU5] gi|157844524|gb|ABV85025.1| Organic radical activating enzyme [Rickettsia massiliae MTU5] Length = 231 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 102/224 (45%), Gaps = 38/224 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 ++ IF T+QGEG G A+F R GCNL C FCDT+F Sbjct: 26 VQSIFKTIQGEGIFVGCPAIFIRLGGCNL-----------ACNFCDTEFEDFD-----LV 69 Query: 66 NVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122 ++DQ+ + +E + EK V+TGGEP+ Q L Q L R ++ +ETNGT+ Sbjct: 70 DIDQILNKVESLALNSKNEKSINLVVITGGEPMRQPIELLCQKLLDRDVKVQIETNGTLY 129 Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQEL------------KLVFPQVNVSPENYIGFDFE 169 PQ + IC SPKAG K +EL K + + ++ Sbjct: 130 RSLPQEVSIIC-SPKAGKTGYSKIREELLPKISAVKFIVAKNILEYSLIPEVGQTSYNIP 188 Query: 170 RFSLQPMDGPFLE---ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 F +QPMD EN LA+ ++ RLS+QTHKF+ I Sbjct: 189 VF-IQPMDQNDQRLNGENNELAVKLALES-GARLSLQTHKFLNI 230 >gi|157803532|ref|YP_001492081.1| 50S ribosomal protein L35 [Rickettsia canadensis str. McKiel] gi|157784795|gb|ABV73296.1| 50S ribosomal protein L35 [Rickettsia canadensis str. McKiel] Length = 225 Score = 177 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 103/224 (45%), Gaps = 38/224 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 +K IF T+QGEG G A+F R GCNL C FCDT+F Sbjct: 20 VKSIFKTIQGEGIFVGSPAIFVRLGGCNL-----------ACHFCDTEFEDFD-----LV 63 Query: 66 NVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122 ++ ++ + +E + EK V+TGGEP+ Q L Q L R F++ +ETNGT+ Sbjct: 64 DITEILNKVESLALNSKNEKSVNLVVITGGEPMRQPIALLCQKLLDRDFKVQIETNGTLY 123 Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQEL------------KLVFPQVNVSPENYIGFDFE 169 P + IC SPKAG K ++L K + + ++ Sbjct: 124 RSLPNEVSIIC-SPKAGQTGYSKIREDLLSQISAVKFIVAKNILEYSFIPEVGQTAYNIP 182 Query: 170 RFSLQPMDG---PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 F +QPMD +EN LA+ ++ +LS+QTHKF+GI Sbjct: 183 VF-VQPMDQNNPKLNDENNALAVKLALESGS-KLSLQTHKFLGI 224 >gi|320335721|ref|YP_004172432.1| Radical SAM domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319757010|gb|ADV68767.1| Radical SAM domain protein [Deinococcus maricopensis DSM 21211] Length = 230 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 54/218 (24%), Positives = 82/218 (37%), Gaps = 24/218 (11%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK Y + E F T QGEG H GR A F R GC C +CD+ + Sbjct: 1 MK-YPVYERFYTWQGEGVHLGRAAYFVRLYGCP-----------QACPWCDSAGTWHRDY 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + + + I + +G V+TGGEP+L L+ AL+ G + +ET+G Sbjct: 49 RPDGVTLMTAHE-IAQAVAAESPDGAVVVITGGEPILFDLTALVDALHALGRRVHLETSG 107 Query: 121 TIEPPQGIDWICVSPK----AGCDLKIKGGQELKLVFPQVNVSPENYIGF----DFERFS 172 +DW+ +SPK ++ E+K++ + D Sbjct: 108 IAPLRGHLDWVTLSPKPFGTPPLPEVVQRAHEVKIIVHDPSDIDAGLATLDGLPDDAVIW 167 Query: 173 LQPMDGPFLEEN---TNLAISYCFQNPKWRLSVQTHKF 207 L P E + N +P+ R Q HK Sbjct: 168 LHPEWSRARERDPAVLNAITETVKASPRLRAGYQMHKL 205 >gi|213586502|ref|ZP_03368328.1| hypothetical protein SentesTyph_36610 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 170 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 68/173 (39%), Gaps = 40/173 (23%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLFSILAKTKESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLTDL 107 Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL 151 L K GF +ET+GT E W+ VSPK ++ E+K Sbjct: 108 LEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKH 160 >gi|67458743|ref|YP_246367.1| organic radical activating protein [Rickettsia felis URRWXCal2] gi|67004276|gb|AAY61202.1| Organic radical activating enzymes [Rickettsia felis URRWXCal2] Length = 225 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 104/225 (46%), Gaps = 38/225 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 ++ IF T+QGEG G A+F R GCNL C FCDT+F Sbjct: 20 VQSIFKTIQGEGIFVGCPAIFIRLGGCNL-----------ACNFCDTEF-----EDFKLV 63 Query: 66 NVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122 ++ ++ + +E + EK V+TGGEP+ Q L Q L + F+I +ETNGT+ Sbjct: 64 DIAEILNKVESLALNSKNEKSINLVVITGGEPMRQPIELLCQKLLDQDFKIQIETNGTLY 123 Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQEL------------KLVFPQVNVSPENYIGFDFE 169 P + IC SPKAG + K ++L K + + ++ Sbjct: 124 RSLPNEVSIIC-SPKAGKNGYSKIREDLLPKISAVKFIIAKNILEYSLIPEVGQTSYNIP 182 Query: 170 RFSLQPM---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 F +QPM D +EN LA+ ++ RLS+QTHKF+GI Sbjct: 183 VF-VQPMDQNDQSLNDENNELAVKLALES-GARLSLQTHKFLGIE 225 >gi|226354845|ref|YP_002784585.1| organic radical activating enzyme [Deinococcus deserti VCD115] gi|226316835|gb|ACO44831.1| putative Organic radical activating enzyme [Deinococcus deserti VCD115] Length = 230 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 58/221 (26%), Positives = 87/221 (39%), Gaps = 30/221 (13%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK Y + E F T QGEG H GR A F R GC +C +CD+ + Sbjct: 1 MK-YPVFERFYTWQGEGVHLGRAAYFVRLYGCP-----------QECPWCDSAGTWHKDY 48 Query: 61 KGG---RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + + +A + ++ G V+TGGEP+L PL++AL+ G + +E Sbjct: 49 RPAGVQLMTPEAIAACVAQESPEGA----VVVITGGEPILFDLTPLVEALHGLGRRVHLE 104 Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKG----GQELKLVFPQVNVSPENYIGF----DFE 169 T+G IDW+ +SPK L + E+K++ + + D Sbjct: 105 TSGIAPLRGAIDWVTLSPKPFGTLPLPSVVQQAHEVKIIVHDTSDIRDGLATLDGLKDDA 164 Query: 170 RFSLQPMDGPFLEEN---TNLAISYCFQNPKWRLSVQTHKF 207 L P E + N NP+ R Q HK Sbjct: 165 VIWLHPEWSKARERDAAVLNAITEAVKANPRLRAGYQMHKL 205 >gi|209525918|ref|ZP_03274452.1| Radical SAM domain protein [Arthrospira maxima CS-328] gi|209493595|gb|EDZ93916.1| Radical SAM domain protein [Arthrospira maxima CS-328] Length = 204 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 96/225 (42%), Gaps = 35/225 (15%) Query: 1 MKLYSIKEIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + E F T+QGEG AG F R +GC + C +CDT + G Sbjct: 1 MITIPVHETFQQTIQGEGYWAGTPVDFIRLAGCPV-----------GCPWCDTGYA--DG 47 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 KG N+ +L+ E V++GGEP + +P L++ L + G ++++ET Sbjct: 48 GKGLPRNMRSFDELLAELV------SPRVVISGGEPFIYPQLPDLVRVLEETGRQVSIET 101 Query: 119 NGTIEPP-QGIDWICVSPKAGCDLKIK-------GGQELKLVFPQVNVSPENYIGFDFER 170 +G + WI +SPK + E+KLV V E Y E Sbjct: 102 SGAFWQDVSDLCWITLSPKEHISPRYPVVSQMWRRASEIKLVID-VGDELEFYRSRLAEN 160 Query: 171 ----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 LQP ++ L ++ Q P +RLSVQ HK+IG+ Sbjct: 161 STIPVFLQPQ-WTDIDRTLPLVLAKLKQFPGYRLSVQLHKYIGVE 204 >gi|284050732|ref|ZP_06380942.1| hypothetical protein AplaP_04589 [Arthrospira platensis str. Paraca] gi|291570892|dbj|BAI93164.1| possible organic radical activating enzyme [Arthrospira platensis NIES-39] Length = 204 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 95/229 (41%), Gaps = 43/229 (18%) Query: 1 MKLYSIKEIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + E F T+QGEG AG F R +GC + C +CDT + G Sbjct: 1 MITIPVHETFQQTIQGEGYWAGTPVDFIRLAGCPV-----------GCPWCDTGYA--DG 47 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 KG NV L+ E V++GGEP + +P L++ L G ++++ET Sbjct: 48 GKGLPRNVRSFDQLLAELV------SPRVVISGGEPFIYPQLPDLVRVLEDSGRQVSIET 101 Query: 119 NGTIEPP-QGIDWICVSPKAG-------CDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 +G + WI +SPK + E+KLV + + + F R Sbjct: 102 SGAFWQDVSDLCWITLSPKEHISPGYPVVSPMWRRASEIKLV-----IDVGDELEFYGCR 156 Query: 171 F--------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 LQP +E L + Q P +RLSVQ HK+IG++ Sbjct: 157 LAENSTIPVFLQPQ-WTDIERTLPLVLEKLKQFPGYRLSVQLHKYIGVQ 204 >gi|91205678|ref|YP_538033.1| organic radical activating protein [Rickettsia bellii RML369-C] gi|157826864|ref|YP_001495928.1| organic radical activating protein [Rickettsia bellii OSU 85-389] gi|91069222|gb|ABE04944.1| Organic radical activating enzymes [Rickettsia bellii RML369-C] gi|157802168|gb|ABV78891.1| Organic radical activating enzymes [Rickettsia bellii OSU 85-389] Length = 225 Score = 174 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 99/222 (44%), Gaps = 38/222 (17%) Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68 IF T+QGEG G A+F R GCNL C FCDT+F +D Sbjct: 23 IFKTIQGEGIFVGVPAIFIRLGGCNL-----------ACDFCDTEF-----ENFETIKID 66 Query: 69 QLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI--EP 124 + + E+ + V+TGGEP+ Q L Q L ++ F++ +ETNGT+ Sbjct: 67 DILSKVNLLALNSKNEQSVKLVVITGGEPMRQPIELLCQKLLEQDFKVQIETNGTLYRSL 126 Query: 125 PQGIDWICVSPKAGCDLKIKGGQEL------------KLVFPQVNVSPENYIGFDFERFS 172 P + IC SPKAG K ++L K + + ++ F Sbjct: 127 PDEVSIIC-SPKAGKKGYSKIREDLLPKISAVKFIIAKNILEYSLIPEIGQTAYNIPVF- 184 Query: 173 LQPM---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +QPM D +EN LA+ ++ RLSVQTHKFIGI Sbjct: 185 VQPMDQNDQKLNKENNELAVKLALES-GARLSVQTHKFIGIE 225 >gi|239948218|ref|ZP_04699971.1| queuosine biosynthesis protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239922494|gb|EER22518.1| queuosine biosynthesis protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 225 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 101/223 (45%), Gaps = 36/223 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 ++ IF T+QGEG G A+F R GCNL C FCDT+F Sbjct: 20 VQSIFKTIQGEGIFVGCPAIFIRLGGCNL-----------ACNFCDTEFEDFD-----LV 63 Query: 66 NVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122 ++D++ + +E EK V+TGGEP+ Q L L F++ +ETNGT+ Sbjct: 64 DIDKILNKVEILALNSKNEKSINLVVITGGEPMRQPIELLCHKLLDLDFKVQIETNGTLY 123 Query: 123 -EPPQGIDWICVSPKAGCDLK-------IKGGQELKLVFP----QVNVSPENYIGFDFER 170 P+G+ IC SPKAG + +K + + ++ PE Sbjct: 124 RSLPKGVSIIC-SPKAGKTGYSKIRENLLPKISAVKFIVAKNILEYSIIPEVGQTSYNIP 182 Query: 171 FSLQPMDGP---FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +QPMD +EN LA+ ++ RLS+QTHKF+ I Sbjct: 183 VFIQPMDQNNQRLNDENNELAVKLALES-GARLSLQTHKFLNI 224 >gi|300869302|ref|ZP_07113893.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] gi|300332679|emb|CBN59091.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] Length = 210 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 33/221 (14%) Query: 4 YSIKEIFLT-LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I E F + +QGEG +G + F R +GC + C +CDT + +G K Sbjct: 10 LPIHETFQSTVQGEGYWSGTLVDFIRLAGCPV-----------HCPWCDTGYS--EGGKD 56 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI-QALNKRGFEIAVETNGT 121 + +L+ E V++GGEP + ++PL+ ++L + G ++++ET+G+ Sbjct: 57 LPNVQRSIVELLTELK------SPRVVISGGEPFIHKNLPLLVESLLEVGKQVSIETSGS 110 Query: 122 IEPP-QGIDWICVSPKAGCDLKIK-------GGQELKLVF---PQVNVSPENYIGFDFER 170 G WI +SPK + K E+KLV +VN + + Sbjct: 111 HWQEVAGETWITLSPKEHVNPKYPVQEKFWSRANEIKLVISTGEEVNFYRDGLVSNPNIP 170 Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 LQP + + + QNP +RLS+QTHK IG++ Sbjct: 171 VFLQP-EWSDRFRAIPIILQLLQQNPGYRLSLQTHKLIGVQ 210 >gi|117923944|ref|YP_864561.1| radical SAM protein [Magnetococcus sp. MC-1] gi|117607700|gb|ABK43155.1| Radical SAM domain protein [Magnetococcus sp. MC-1] Length = 204 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 67/216 (31%), Positives = 95/216 (43%), Gaps = 24/216 (11%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 Y+I +IF ++QGE H G VF RFSGC L +C +CD + Q K Sbjct: 4 TYAICDIFHSIQGEATHTGLPMVFIRFSGCPL-----------RCSWCDEP-LHRQADKA 51 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG- 120 + QL I E +LTGGEPL+ + L+ +G+ IA+ET G Sbjct: 52 EHLTLTQLRSRILELAP----HTTNLLLTGGEPLMAPHLDRLVDYFKDQGYWIAMETCGE 107 Query: 121 TIEPPQGIDWICVSPKAGCDLKI-KGGQELKLVF--PQVNVSPENYIGFDFERFSLQPMD 177 E P +DW+ +SPK + + E+KLV E LQP Sbjct: 108 GGEIPAEVDWVTLSPKNQLPQSLYERADEVKLVLGADADQSDKERLTQCHHPNLWLQPRA 167 Query: 178 GPFLEE--NTNLAISYCFQNPK-WRLSVQTHKFIGI 210 P + L + ++ WRLS+QTHK+IG+ Sbjct: 168 LPTGPDPMAVALCYRWALESGGAWRLSLQTHKYIGV 203 >gi|15892856|ref|NP_360570.1| hypothetical protein RC0933 [Rickettsia conorii str. Malish 7] gi|34581434|ref|ZP_00142914.1| hypothetical protein [Rickettsia sibirica 246] gi|157828787|ref|YP_001495029.1| hypothetical protein A1G_05140 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933515|ref|YP_001650304.1| queuosine biosynthesis protein [Rickettsia rickettsii str. Iowa] gi|229586950|ref|YP_002845451.1| Organic radical activating enzyme [Rickettsia africae ESF-5] gi|15620043|gb|AAL03471.1| unknown [Rickettsia conorii str. Malish 7] gi|28262819|gb|EAA26323.1| unknown [Rickettsia sibirica 246] gi|157801268|gb|ABV76521.1| hypothetical protein A1G_05140 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908602|gb|ABY72898.1| queuosine biosynthesis protein [Rickettsia rickettsii str. Iowa] gi|228022000|gb|ACP53708.1| Organic radical activating enzyme [Rickettsia africae ESF-5] Length = 225 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 101/224 (45%), Gaps = 38/224 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 ++ IF T+QGEG G A+F R GCNL C FCDT+F Sbjct: 20 VQSIFKTIQGEGIFVGCPAIFIRLGGCNL-----------ACNFCDTEFEDFD-----LV 63 Query: 66 NVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122 ++D++ + +E + EK V+TGGEP+ Q L Q L R ++ +ETNGT+ Sbjct: 64 DIDKILNKVESLALNSKNEKSINLVVITGGEPMRQPIELLCQKLLDRDVKVQIETNGTLY 123 Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQEL------------KLVFPQVNVSPENYIGFDFE 169 P+ + IC SPK G K ++L K + + ++ Sbjct: 124 RSLPKEVSIIC-SPKVGKTGYSKIREDLLPKISAVKFIVAKNILEYSLIPEVGQTSYNIP 182 Query: 170 RFSLQPMDGPFLE---ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 F +QPMD EN LA+ ++ RLS+QTHKF+ I Sbjct: 183 VF-IQPMDQNNQRLNGENNELAVKLALES-GARLSLQTHKFLNI 224 >gi|258593846|emb|CBE70187.1| Radical SAM domain protein [NC10 bacterium 'Dutch sediment'] Length = 214 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 58/229 (25%), Positives = 95/229 (41%), Gaps = 44/229 (19%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + EIF ++QGE +AGR VF R +GCNL +CR+CDT + + Sbjct: 1 MMSLRVNEIFYSIQGESTYAGRPCVFVRLTGCNL-----------RCRWCDTTYAFHE-- 47 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119 G + +++Q+ + + + +TGGEPLLQ V PLI L G+E+ +ET Sbjct: 48 -GEQRSIEQVLEQVR------GYKCPLVEITGGEPLLQEAVHPLIDRLLLEGYEVLIETG 100 Query: 120 GTIEPPQGIDWICV------SPKAGCDL--------KIKGGQELKLV------FPQVNVS 159 G++ + +D V +P +G D + ++K V + Sbjct: 101 GSLSIDR-LDRRVVKILDLKAPGSGMDPHNNLENLRHLDRKDQIKFVVADRRDYEWARRV 159 Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + + P+ G LA RL +Q HK++ Sbjct: 160 MAEHALAEKAHVLFSPVLGELHPR--ELAEWILTDRLNVRLQIQLHKYL 206 >gi|238650659|ref|YP_002916511.1| queuosine biosynthesis protein [Rickettsia peacockii str. Rustic] gi|238624757|gb|ACR47463.1| queuosine biosynthesis protein [Rickettsia peacockii str. Rustic] Length = 225 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 101/224 (45%), Gaps = 38/224 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 ++ IF T+QGEG G A+F R GCNL C FCDT+F Sbjct: 20 VQSIFKTIQGEGIFVGCPAIFIRLGGCNL-----------ACNFCDTEFEAFD-----LV 63 Query: 66 NVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122 ++D++ + +E + EK V+TGGEP+ Q L Q L R ++ +ETNGT+ Sbjct: 64 DIDKILNKVESLALNSKNEKSINLVVITGGEPMRQPIELLCQKLLDRDVKVQIETNGTLY 123 Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQEL------------KLVFPQVNVSPENYIGFDFE 169 P+ + IC SPK G K ++L K + + ++ Sbjct: 124 RSLPKEVSIIC-SPKVGKTSYSKIREDLLPKISAVKFIVAKNILEYSLIPEVGQTSYNIP 182 Query: 170 RFSLQPMDGPFLE---ENTNLAISYCFQNPKWRLSVQTHKFIGI 210 F +QPMD EN LA+ ++ RLS+QTHKF+ I Sbjct: 183 VF-IQPMDQNNQRLNGENNELAVKLALESGT-RLSLQTHKFLNI 224 >gi|157825999|ref|YP_001493719.1| organic radical activating protein [Rickettsia akari str. Hartford] gi|157799957|gb|ABV75211.1| Organic radical activating enzyme [Rickettsia akari str. Hartford] Length = 225 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 38/229 (16%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 ++ IF T+QGEG G A+F R GCNL C FCDT+F Sbjct: 16 TTLEVQSIFKTIQGEGLFVGGPAIFIRLGGCNL-----------ACNFCDTEF-----ED 59 Query: 62 GGRYNVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 ++ ++ + +E + E+ V+TGGEP+ Q L Q L + F++ +ETN Sbjct: 60 FKLVDIVEILNKVESLALNSKNERAINLVVITGGEPMRQPIELLCQKLLDQDFKVQIETN 119 Query: 120 GTI--EPPQGIDWICVSPKAGCDLKIKGGQEL-------KLVFPQVNVSPENYIGFDFER 170 GT+ P + IC SPKAG K ++L K + + N+ N+I + Sbjct: 120 GTLYRALPNEVYIIC-SPKAGKTGYSKIREDLLSQISAVKFIVAK-NILEYNFIPEVGQT 177 Query: 171 -----FSLQPMDGP---FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 +QPMD +EN LA+ ++ RLS+QTHK +GI Sbjct: 178 SYNIPVFIQPMDQNNQRLNDENNELAVKLALES-GARLSLQTHKILGIE 225 >gi|163781704|ref|ZP_02176704.1| hypothetical protein HG1285_02438 [Hydrogenivirga sp. 128-5-R1-1] gi|159882924|gb|EDP76428.1| hypothetical protein HG1285_02438 [Hydrogenivirga sp. 128-5-R1-1] Length = 218 Score = 171 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 99/226 (43%), Gaps = 39/226 (17%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 S+ EI+ ++QGEG G ++F R GCNL +C +CD Sbjct: 12 LSVNEIYESIQGEGLLVGTPSIFIRLQGCNL-----------RCPWCDQPEAL--SFSNT 58 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 V+ + ++E R+ V+TGGEP ++ L++AL + GF + +ETNGT+ Sbjct: 59 TIPVEGILQKVQE------FPARHVVITGGEPFAHQNLHVLVRALIEEGFSLQIETNGTL 112 Query: 123 EPPQGID------WICVSPKAGCDL-----KIKGGQELKLVFPQ----VNVSPENYIG-F 166 +G+D I SPKA + IK ELK V + V E + G Sbjct: 113 -WNEGLDSMAEQVHITCSPKAAANFFVNPRVIKHTNELKFVVDEEFSSDVVLREEFRGLL 171 Query: 167 DFERFSLQPMDGP--FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 E+ LQP FL + ++ + K R+ Q HK +G+ Sbjct: 172 LAEKVVLQPEGNKVSFLRKALDIQRELSLKGFKVRVIPQVHKLLGL 217 >gi|320539607|ref|ZP_08039271.1| putative conserved protein [Serratia symbiotica str. Tucson] gi|320030219|gb|EFW12234.1| putative conserved protein [Serratia symbiotica str. Tucson] Length = 250 Score = 170 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 49/201 (24%), Positives = 76/201 (37%), Gaps = 46/201 (22%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------------ 57 F TLQGEG G A+F R GC + C +CDT Sbjct: 63 FQTLQGEGFFTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKEVNREVDMQRI 111 Query: 58 -----QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF 112 + G + +QL ++ +Q R+ V+TGGEP + VPL L ++G+ Sbjct: 112 LVKTEESATWGSASAEQLLAVMRQQG----YTARHVVITGGEPCIYDLVPLTALLEQQGY 167 Query: 113 EIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ------VNV 158 +ET+GT E + W+ VSPK D ++ E+K + ++ Sbjct: 168 GCQIETSGTYEIRCSVKTWVTVSPKVNMRGGMKVLDQALQRADEVKHPVARERDIEALDA 227 Query: 159 SPENYIGFDFERFSLQPMDGP 179 +LQP+ Sbjct: 228 LLATLHDKKPRIIALQPISKK 248 >gi|154149814|ref|YP_001403432.1| radical SAM domain-containing protein [Candidatus Methanoregula boonei 6A8] gi|153998366|gb|ABS54789.1| Radical SAM domain protein [Methanoregula boonei 6A8] Length = 202 Score = 170 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 99/226 (43%), Gaps = 44/226 (19%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF +LQGEG G +F R +GCNL CR+CDT + GT+ Sbjct: 2 KIAEIFKSLQGEGVRQGTPCIFIRLAGCNL-----------ACRWCDTQYARSGGTETSC 50 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTI 122 ++EE W ++ R +TGGEPLLQ V +PL+ +L+KRG I +ETNGTI Sbjct: 51 ------DKILEEIW---KENPRSVCITGGEPLLQTDVLLPLLASLHKRGITIDIETNGTI 101 Query: 123 EPPQ-------GIDWICVSPKAGCDL----KIKGGQELKLVFPQVNVSPENYIGFDFERF 171 + +D C S DL +I+ +K V +++ Y R Sbjct: 102 DFSPVQPFAAVCMDVKCPSSGERSDLSLLARIRPTDSVKFVV--GDLADCRYAQEVLARH 159 Query: 172 ------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 L P+ G + + N R +Q HK +G++ Sbjct: 160 AIAGECFLSPVYGTDCDTIVRFILD---NNLPVRFQLQLHKILGVK 202 >gi|227827777|ref|YP_002829557.1| radical SAM protein [Sulfolobus islandicus M.14.25] gi|227830487|ref|YP_002832267.1| radical SAM protein [Sulfolobus islandicus L.S.2.15] gi|229579299|ref|YP_002837697.1| Radical SAM domain protein [Sulfolobus islandicus Y.G.57.14] gi|229581941|ref|YP_002840340.1| Radical SAM domain protein [Sulfolobus islandicus Y.N.15.51] gi|229585048|ref|YP_002843550.1| Radical SAM domain protein [Sulfolobus islandicus M.16.27] gi|238619949|ref|YP_002914775.1| Radical SAM domain protein [Sulfolobus islandicus M.16.4] gi|284997981|ref|YP_003419748.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5] gi|227456935|gb|ACP35622.1| Radical SAM domain protein [Sulfolobus islandicus L.S.2.15] gi|227459573|gb|ACP38259.1| Radical SAM domain protein [Sulfolobus islandicus M.14.25] gi|228010013|gb|ACP45775.1| Radical SAM domain protein [Sulfolobus islandicus Y.G.57.14] gi|228012657|gb|ACP48418.1| Radical SAM domain protein [Sulfolobus islandicus Y.N.15.51] gi|228020098|gb|ACP55505.1| Radical SAM domain protein [Sulfolobus islandicus M.16.27] gi|238381019|gb|ACR42107.1| Radical SAM domain protein [Sulfolobus islandicus M.16.4] gi|284445876|gb|ADB87378.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5] gi|323477585|gb|ADX82823.1| Radical SAM domain protein [Sulfolobus islandicus HVE10/4] Length = 208 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 103/231 (44%), Gaps = 43/231 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK Y + EIF ++QGEG G + F R + CNL +C +CDT + Sbjct: 1 MK-YRVIEIFTSVQGEGEVIGTPSNFIRLATCNL-----------RCVWCDTKYSW---E 45 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 G +D++ I+ K+ R +TGGEPLLQ VPL + L G +I +ETNG Sbjct: 46 IGTEMTIDEIIAKID-------KKIRTTTITGGEPLLQNVVPLAKELKSIGHKIVIETNG 98 Query: 121 TIEPPQG----IDWICVSPK---AGCDLKIKGGQEL----KLVFPQVNVSPENYIGF--- 166 TI+P + ID VSPK +G LK + K V N + I F Sbjct: 99 TIKPSEELRKIIDVFSVSPKLSNSGHKLKYDFSDDWATYYKFVIVYPNKDIDEVIKFVES 158 Query: 167 ---DFERFSLQPMDGPFLE--ENTNLAISYCFQN-PKWRLSVQTHKFIGIR 211 + + LQP DG + N + ++R+ Q H+ IG+R Sbjct: 159 QNINPRKVILQP-DGNRSDYINAINEIVQIVLDRGLQFRVLPQLHRIIGVR 208 >gi|294055328|ref|YP_003548986.1| Radical SAM domain protein [Coraliomargarita akajimensis DSM 45221] gi|293614661|gb|ADE54816.1| Radical SAM domain protein [Coraliomargarita akajimensis DSM 45221] Length = 226 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 52/216 (24%), Positives = 82/216 (37%), Gaps = 28/216 (12%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 K + E F + QGEG HAGR A F R GC + C +CD+ GT Sbjct: 3 KQLPVHEQFYSFQGEGCHAGRAAYFIRLFGCPV-----------HCPWCDSA-----GTW 46 Query: 62 GGRYNVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 Y + + ++ + + + V+TGGEP + L L + G+ + +ET+ Sbjct: 47 HPDYVPESIDRVLANDLLASVQKTAAEFVVITGGEPAIHDLSELTAVLRRAGYPVHLETS 106 Query: 120 GTIEPPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQVNVSPENYIGFD----FERFS 172 G E DW+ +SPK +K E KL+ ++ E Y Sbjct: 107 GAFELKGVFDWVTLSPKRWKLPLPENLKRADEFKLIVDELGA-IEEYARLPGVLRSVPVW 165 Query: 173 LQP-MDGPFLEENTNLAISYCFQN-PKWRLSVQTHK 206 L P + + + + +R Q HK Sbjct: 166 LHPEWSQQRNQAILSAITEWVKAHGAPFRAGWQMHK 201 >gi|325283487|ref|YP_004256028.1| Radical SAM domain-containing protein [Deinococcus proteolyticus MRP] gi|324315296|gb|ADY26411.1| Radical SAM domain protein [Deinococcus proteolyticus MRP] Length = 285 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 55/219 (25%), Positives = 79/219 (36%), Gaps = 31/219 (14%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + E F T QGEG H GR A F R GC C +CD+ GT Sbjct: 58 YPVYERFYTWQGEGVHLGRAAYFIRLYGCP-----------QHCPWCDSA-----GTWHP 101 Query: 64 RYNVDQL----ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 Y + + A + + G ++TGGEP+L PL AL+ G + +ET+ Sbjct: 102 EYRPESVGLMDAQALADAVAAESPAGAVVIITGGEPILFDLAPLTDALHAIGRRVHIETS 161 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIK----GGQELKLVFPQVNVSPENYIGFDFER----F 171 G +DW+ +SPK + E+K++ + D R Sbjct: 162 GIAPLRGELDWVTLSPKPTQKWPLPEVVAHADEVKIIVHEPQDIAAGLATLDGLRDDAVI 221 Query: 172 SLQPMDGPFLEENTN---LAISYCFQNPKWRLSVQTHKF 207 L P E +P+ R Q HK Sbjct: 222 WLHPEWSRAREREMRVLNAITEAVKADPRLRAGYQMHKL 260 >gi|15604457|ref|NP_220975.1| hypothetical protein RP607 [Rickettsia prowazekii str. Madrid E] gi|3861151|emb|CAA15051.1| unknown [Rickettsia prowazekii] Length = 234 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 38/225 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 ++ IF T+QGEG G ++F R GCNL C FCDT+F Sbjct: 29 VQSIFKTIQGEGIFVGYPSIFIRLGGCNL-----------ACNFCDTEF-----EDFKLI 72 Query: 66 NVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122 ++DQ+ + ++ K V+TGGEP+ Q L Q L + F++ +ETNGT+ Sbjct: 73 DIDQILNKVKNLSLNSKNAKTINLVVITGGEPMRQPIGLLCQKLLDQDFKVQIETNGTLY 132 Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQEL------------KLVFPQVNVSPENYIGFDFE 169 P+ + +C SPK G K ++L K + + +D Sbjct: 133 RSLPKEVFIVC-SPKVGKTGYNKIREDLLPQISAVKFIISKNIVEYSIIPEVGQSAYDIP 191 Query: 170 RFSLQPMDGPF---LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 F +Q MD EN LA+ ++ RLS+QTHKF+GI Sbjct: 192 VF-VQSMDQNDKRLNNENNELAVKLALES-GARLSLQTHKFLGIE 234 >gi|292572231|gb|ADE30146.1| Organic radical activating enzyme [Rickettsia prowazekii Rp22] Length = 225 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 38/225 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 ++ IF T+QGEG G ++F R GCNL C FCDT+F Sbjct: 20 VQSIFKTIQGEGIFVGYPSIFIRLGGCNL-----------ACNFCDTEF-----EDFKLI 63 Query: 66 NVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122 ++DQ+ + ++ K V+TGGEP+ Q L Q L + F++ +ETNGT+ Sbjct: 64 DIDQILNKVKNLSLNSKNAKTINLVVITGGEPMRQPIGLLCQKLLDQDFKVQIETNGTLY 123 Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQEL------------KLVFPQVNVSPENYIGFDFE 169 P+ + +C SPK G K ++L K + + +D Sbjct: 124 RSLPKEVFIVC-SPKVGKTGYNKIREDLLPQISAVKFIISKNIVEYSIIPEVGQSAYDIP 182 Query: 170 RFSLQPMDGPF---LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 F +Q MD EN LA+ ++ RLS+QTHKF+GI Sbjct: 183 VF-VQSMDQNDKRLNNENNELAVKLALES-GARLSLQTHKFLGIE 225 >gi|146306312|ref|YP_001186777.1| radical SAM domain-containing protein [Pseudomonas mendocina ymp] gi|145574513|gb|ABP84045.1| Radical SAM domain protein [Pseudomonas mendocina ymp] Length = 226 Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 62/232 (26%), Positives = 92/232 (39%), Gaps = 51/232 (21%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIF +LQGE AG VF R +GC L +C++CDT + + Sbjct: 14 ETLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDTAYAF---SG 59 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 G +D + D + RY +TGGEPL Q + +PL+ L G+E+++ET+G Sbjct: 60 GEIVTLDSILDQVAA------YRPRYVCVTGGEPLAQPNCIPLLTRLCDAGYEVSLETSG 113 Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQELK----------LVFPQVNVSPENYIGFDF 168 ++ V P+ DLK G E++ QV + +D+ Sbjct: 114 ALDVSA------VDPRVSKVLDLKTPGSAEVQRNRYENIEWLTANDQVKFVICSREDYDW 167 Query: 169 ERFSLQPMDGPFLE------------ENTNLAISYCFQNPKWRLSVQTHKFI 208 L D P E LA N RL +Q HK + Sbjct: 168 AVSKLIQYDLPARAGEVLFSPSHKQVEARALADWIVADNLPVRLQLQLHKIL 219 >gi|323474845|gb|ADX85451.1| organic radical activating enzyme, NrdG [Sulfolobus islandicus REY15A] Length = 208 Score = 167 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 102/231 (44%), Gaps = 43/231 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK Y + EIF ++QGEG G + F R + CNL +C +CDT + Sbjct: 1 MK-YRVIEIFTSVQGEGEVIGTPSNFIRLATCNL-----------RCVWCDTKYSW---E 45 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 G +D++ I+ K+ R +TGGEPLLQ VPL + L G +I +ETNG Sbjct: 46 IGTEMTIDEIIAKID-------KKIRTTTITGGEPLLQNVVPLAKELKSIGHKIVIETNG 98 Query: 121 TIEPPQG----IDWICVSPK---AGCDLKIKGGQEL----KLVFPQVNVSPENYIGF--- 166 TI+P + ID VSPK +G LK + K V N + I F Sbjct: 99 TIKPSEELRKIIDVFSVSPKLSNSGHKLKYDFSDDWATYYKFVIVYPNKDIDEVIKFVES 158 Query: 167 ---DFERFSLQPMDGPFLE--ENTNLAISYCFQN-PKWRLSVQTHKFIGIR 211 + + LQP DG + N + +R+ Q H+ IG+R Sbjct: 159 QNINPRKVILQP-DGNRSDYINAINEIVQIVLDRGLLFRVLPQLHRIIGVR 208 >gi|37522605|ref|NP_925982.1| hypothetical protein gll3036 [Gloeobacter violaceus PCC 7421] gi|35213606|dbj|BAC90977.1| gll3036 [Gloeobacter violaceus PCC 7421] Length = 214 Score = 167 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 59/218 (27%), Positives = 91/218 (41%), Gaps = 31/218 (14%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 ++E F T+QGEG AG V F R GC + C +CDT + G Sbjct: 16 IPVQETFGPTIQGEGYWAGAVVDFIRLYGCPV-----------GCPWCDTGYA--DGGPQ 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 V +DLI E V++GGEP + +P L++A+ + G +A+ET+G Sbjct: 63 LPRAVRTFSDLILELK------SPRVVISGGEPFIHAALPALVEAIGRTGRAVAIETSGA 116 Query: 122 IEPP-QGIDWICVSPKAGCDLKIK-------GGQELKLVFPQ-VNVSPENYIGFDFERFS 172 P W+ +SPK + E+K+V + S Sbjct: 117 FWQPVPDWAWVTLSPKEHVSPRHPVNPQMWRRANEVKIVIAGGAELDVYRRFLPPGVPVS 176 Query: 173 LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 LQP + E L + +P++RLSVQ HK++ + Sbjct: 177 LQP-EWEARERTLPLTLELLKAHPRYRLSVQLHKYLQV 213 >gi|51473785|ref|YP_067542.1| hypothetical protein RT0595 [Rickettsia typhi str. Wilmington] gi|51460097|gb|AAU04060.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 231 Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 100/225 (44%), Gaps = 38/225 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 ++ IF T+QGEG G ++F R GCNL C FCDT+F Sbjct: 26 VQSIFKTIQGEGIFVGYPSIFIRLGGCNL-----------ACNFCDTEF-----EDFELI 69 Query: 66 NVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122 ++DQ+ + ++ K V+TGGEP+ Q L Q L + F++ +ETNGT+ Sbjct: 70 DIDQIINKVQNLSLNSKNSKTINLVVITGGEPMRQPIGLLCQKLLDQDFKVQIETNGTLY 129 Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQEL------------KLVFPQVNVSPENYIGFDFE 169 P+G+ +C SPK G K ++L K + + ++ Sbjct: 130 RSLPKGVFIVC-SPKVGKTGYNKIREDLLPQVCAVKFIISKNIIEYSIIPEVGQSAYNIP 188 Query: 170 RFSLQPMDG---PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 F +Q MD EN LA+ ++ RLS+Q HKF+GI Sbjct: 189 VF-VQSMDQNDKKLNAENNELAVKLALES-GARLSLQIHKFLGIE 231 >gi|292490344|ref|YP_003525783.1| radical SAM protein [Nitrosococcus halophilus Nc4] gi|291578939|gb|ADE13396.1| Radical SAM domain protein [Nitrosococcus halophilus Nc4] Length = 213 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 91/234 (38%), Gaps = 54/234 (23%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK I EIF +LQGE G VF R +GC L +C +CDT++ GT Sbjct: 1 MKRLRITEIFHSLQGESRSVGWPTVFVRLTGCPL-----------RCHYCDTEYAFQGGT 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 +D++ + E R+ +TGGEPL Q + L+ L G+E+++ET+ Sbjct: 50 ---WMELDEILATVAEFG------ARHVTVTGGEPLAQPACLELLTQLCDVGYEVSLETS 100 Query: 120 GTIEPPQGIDWICVSPKA--GCDLKIKGGQE-----------------LKLV------FP 154 G ++ V P+ DLK G E +KLV + Sbjct: 101 GALDISA------VDPRVVKVMDLKTPGSGEEARNSTTNLDYLSSQDQVKLVLCDRHDYE 154 Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + E + + P T+LA R+ +Q HK++ Sbjct: 155 WARTALERHRLAERCEVLFSPSYEQLSP--TDLAEWILEDRLPVRMQIQLHKYL 206 >gi|15921783|ref|NP_377452.1| hypothetical protein ST1490 [Sulfolobus tokodaii str. 7] gi|15622570|dbj|BAB66561.1| 212aa long conserved hypothetical protein [Sulfolobus tokodaii str. 7] Length = 212 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 102/231 (44%), Gaps = 39/231 (16%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y I EIF ++QGEG G + F R +GC+L +C +CDT + + Sbjct: 1 MVKYWISEIFTSIQGEGEVIGTPSNFIRLAGCHL-----------RCIWCDTKYAWHK-Y 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 G +++Q+ D I+ K ++ +TGGEPLLQ +PL++AL ++ VET+G Sbjct: 49 DGEEMSIEQILDKID-------KRIKFTTITGGEPLLQDILPLVEALKSLNHKVLVETSG 101 Query: 121 TIEPPQG----IDWICVSPK---AGCDLKIKGGQE-----LKLVFPQVNVSPENYIGF-- 166 TI+P + +D VSPK +G K + K V + I F Sbjct: 102 TIKPSKKLRELVDIFSVSPKLSNSGYKFKYNFKDDNWVTYFKFVIVNPLEDIQEIIRFIR 161 Query: 167 ----DFERFSLQPMDGPFL-EENTNLAISYCFQ-NPKWRLSVQTHKFIGIR 211 + + LQP E I + +R+ Q H+ +GI+ Sbjct: 162 ENNIEPSKVILQPDGRKENYTEGLRELIDIILKLGIPFRVLPQFHRIVGIQ 212 >gi|330811384|ref|YP_004355846.1| Putative radical SAM-superfamily protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379492|gb|AEA70842.1| Putative radical SAM-superfamily protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 215 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 98/233 (42%), Gaps = 55/233 (23%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I E+F +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 + L D++E+ RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 ----LRTLDDILEQ---VASYRPRYVCVTGGEPLAQPNAIPLLKQLCDAGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQE--------LKLVFPQVNV-----SPENY--- 163 ++ V P+ DLK G +E ++L+ P V S E+Y Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEAHRNRYENIELLTPNDQVKFVICSREDYDWA 157 Query: 164 --------IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + L P +LA N RL +Q HK++ Sbjct: 158 VSKLIQYGLDQRAGEVLLSP--SHHDLSARDLADWVVADNLPVRLQLQLHKYL 208 >gi|312962750|ref|ZP_07777238.1| queuosine biosynthesis protein QueE [Pseudomonas fluorescens WH6] gi|311282967|gb|EFQ61560.1| queuosine biosynthesis protein QueE [Pseudomonas fluorescens WH6] Length = 218 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 56/225 (24%), Positives = 96/225 (42%), Gaps = 39/225 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I E+F +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 7 TLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 53 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 + L D++E+ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 54 ----IRTLDDILEQ---VAGYKPRYVCVTGGEPLAQPNAIPLLKQLCDAGYEVSLETSGA 106 Query: 122 IEPPQ-------GIDWICVSPKAGCDLKIKGG------QELKLVF---PQVNVSPENYIG 165 ++ +D K + + ++K V + + I Sbjct: 107 LDISAVDSRVSRVVDLKTPDSKEAHRNRYENIELLTPNDQVKFVICSRDDYDWATSKLIQ 166 Query: 166 FDFERFSLQPMDGPFLEE--NTNLAISYCFQNPKWRLSVQTHKFI 208 + ER + + + P + LA N RL +Q HK++ Sbjct: 167 YGLERRAGEVLFSPSHHDLNARELADWVVADNLPVRLQLQLHKYL 211 >gi|229592292|ref|YP_002874411.1| putative radical SAM-superfamily protein [Pseudomonas fluorescens SBW25] gi|229364158|emb|CAY51804.1| putative radical SAM-superfamily protein [Pseudomonas fluorescens SBW25] Length = 215 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 100/231 (43%), Gaps = 51/231 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I E+F +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 V L D++E+ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 ----VRTLDDILEQ---VAGYKPRYVCVTGGEPLAQPNAIPLLKQLCDAGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLVF---PQVNVS 159 ++ V P+ DLK G +E +K V + + Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEAHRNRYENIELLTANDQVKFVICSREDYDWA 157 Query: 160 PENYIGFDFERFSLQPMDGPFLEE--NTNLAISYCFQNPKWRLSVQTHKFI 208 I + +R + + + P + +LA N RL +Q HK++ Sbjct: 158 NSKLIQYGLDRRAGEVLFSPSHHDLNARDLADWVVADNLPVRLQLQLHKYL 208 >gi|226328670|ref|ZP_03804188.1| hypothetical protein PROPEN_02565 [Proteus penneri ATCC 35198] gi|225203403|gb|EEG85757.1| hypothetical protein PROPEN_02565 [Proteus penneri ATCC 35198] Length = 152 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 65/155 (41%), Gaps = 33/155 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEVFQTLQGEGVFTGVPALFVRLQGCPV-----------GCSWCDTKHTWEKEDEKK 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + G +V Q+ L ++Q ++ V+TGGEP L PL + Sbjct: 52 VLLGDIPIKTQESDTWGEASVAQILSLFQQQG----YSAKHVVITGGEPCLYDLRPLTEG 107 Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCD 140 L + GF +ET+GT + W+ +SPK G Sbjct: 108 LEQAGFACQIETSGTHDILCSEKTWVTLSPKVGMK 142 >gi|330959274|gb|EGH59534.1| radical SAM domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 215 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 101/231 (43%), Gaps = 51/231 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 V L D+IE+ RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 ----VQALDDIIEQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNV-SPENYIGF-----DFERFS 172 ++ V P+ DLK G +E+ + + + + +P + + F + ++ Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEVARNRYENIELLTPNDQVKFVLCSREDYDWA 157 Query: 173 LQPMDGPFLEENT---------------NLAISYCFQNPKWRLSVQTHKFI 208 + + L+ +LA N RL +Q HK + Sbjct: 158 VSKLIQYGLDRRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208 >gi|77460620|ref|YP_350127.1| radical SAM family protein [Pseudomonas fluorescens Pf0-1] gi|77384623|gb|ABA76136.1| putative radical SAM-superfamily protein [Pseudomonas fluorescens Pf0-1] Length = 215 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 51/231 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I E+F +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 + L D++E+ RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 ----IRTLDDILEQ---VAGFRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVN-VSPENYIGF-----DFERFS 172 ++ V P+ DLK +E + + ++ ++P + + F + ++ Sbjct: 104 LDISA------VDPRVSRVVDLKTPDSKEAHRNRYENIDLLTPNDQVKFVICSREDYDWA 157 Query: 173 LQPMDGPFLEE---------------NTNLAISYCFQNPKWRLSVQTHKFI 208 + + LE +LA N RL +Q HK++ Sbjct: 158 VSKLIQYGLERRAGEVLFSPSHHDLNARDLADWVVADNLPVRLQLQLHKYL 208 >gi|15897539|ref|NP_342144.1| hypothetical protein SSO0624 [Sulfolobus solfataricus P2] gi|13813792|gb|AAK40934.1| Conserved hypothetical protein [Sulfolobus solfataricus P2] Length = 211 Score = 165 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 103/231 (44%), Gaps = 43/231 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK Y + EIF ++QGEG G + F R + CNL +C +CDT + Sbjct: 4 MK-YRVIEIFTSIQGEGEVIGIPSNFIRLATCNL-----------RCVWCDTKYSW---E 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 G ++D++ ++ K+ + +TGGEPLLQ +PL + L G +I VETNG Sbjct: 49 IGTEMSIDEIIAKLD-------KKIKTTTITGGEPLLQNILPLAKELKSIGHKIVVETNG 101 Query: 121 TIEPPQG----IDWICVSPK---AGCDLKIKGGQEL----KLVFPQVNVSPENYIGF--- 166 TI+P + ID VSPK +G LK + K V N + + F Sbjct: 102 TIKPSEELRKIIDIFSVSPKLSNSGHKLKYDFADDWATYYKFVIVYPNKDIDEVVKFVES 161 Query: 167 ---DFERFSLQPMDGPFLE--ENTNLAISYCFQN-PKWRLSVQTHKFIGIR 211 + + LQP DG + N + ++R+ Q H+ IG R Sbjct: 162 QSINPRKVILQP-DGNRSDYINAINEIVQIVLDRGLQFRVLPQLHRIIGAR 211 >gi|284174859|ref|ZP_06388828.1| hypothetical protein Ssol98_09426 [Sulfolobus solfataricus 98/2] gi|261602301|gb|ACX91904.1| Radical SAM domain protein [Sulfolobus solfataricus 98/2] Length = 208 Score = 165 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 103/231 (44%), Gaps = 43/231 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK Y + EIF ++QGEG G + F R + CNL +C +CDT + Sbjct: 1 MK-YRVIEIFTSIQGEGEVIGIPSNFIRLATCNL-----------RCVWCDTKYSW---E 45 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 G ++D++ ++ K+ + +TGGEPLLQ +PL + L G +I VETNG Sbjct: 46 IGTEMSIDEIIAKLD-------KKIKTTTITGGEPLLQNILPLAKELKSIGHKIVVETNG 98 Query: 121 TIEPPQG----IDWICVSPK---AGCDLKIKGGQEL----KLVFPQVNVSPENYIGF--- 166 TI+P + ID VSPK +G LK + K V N + + F Sbjct: 99 TIKPSEELRKIIDIFSVSPKLSNSGHKLKYDFADDWATYYKFVIVYPNKDIDEVVKFVES 158 Query: 167 ---DFERFSLQPMDGPFLE--ENTNLAISYCFQN-PKWRLSVQTHKFIGIR 211 + + LQP DG + N + ++R+ Q H+ IG R Sbjct: 159 QSINPRKVILQP-DGNRSDYINAINEIVQIVLDRGLQFRVLPQLHRIIGAR 208 >gi|300112861|ref|YP_003759436.1| radical SAM domain-containing protein [Nitrosococcus watsonii C-113] gi|299538798|gb|ADJ27115.1| Radical SAM domain protein [Nitrosococcus watsonii C-113] Length = 213 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 50/232 (21%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK I EIF +LQGE G F R +GC L +C +CDT++ Sbjct: 1 MKRLRITEIFYSLQGEARSVGWPTAFVRLTGCPL-----------RCHYCDTEYAF---Q 46 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETN 119 G +D++ D++ E + R+ +TGGEPL+Q + L+ L G+E+++ET+ Sbjct: 47 GGNWMALDRILDVVAEFGV------RHVTVTGGEPLVQSACLELLTRLCDAGYEVSLETS 100 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQE-----------------LKLVFPQVNVSPEN 162 G ++ ID V D K G E +KLV N + Sbjct: 101 GALDIS-AIDCRVV---KVMDWKTPGSGEEARNLYTNLAHLSSQDQVKLVLC--NRHDYD 154 Query: 163 YIGFDFERFSL-QPMDGPFLEEN-----TNLAISYCFQNPKWRLSVQTHKFI 208 + +R L + D F + T+LA R+ +Q HK++ Sbjct: 155 WAKAVLDRHRLTEYCDVLFSPSHEQLSPTDLADWILADRLPVRMQIQLHKYL 206 >gi|152987293|ref|YP_001349882.1| radical activating enzyme [Pseudomonas aeruginosa PA7] gi|150962451|gb|ABR84476.1| probable radical activating enzyme [Pseudomonas aeruginosa PA7] Length = 215 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 51/232 (21%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIF +LQGE AG VF R +GC L +C +CDT + + Sbjct: 3 QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 48 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 G ++D + + + + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 49 GEIVSLDAILERVAA------YKPRYICVTGGEPLAQPNCIPLLERLCDAGYEVSLETSG 102 Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQE----------LKLVFPQVNVSPENYIGFDF 168 ++ + V P+ DLK G E L QV + +D+ Sbjct: 103 ALDVSR------VDPRVSKVLDLKTPGSGEVGRNRYENIPLLTANDQVKFVVCSREDYDW 156 Query: 169 E-----RFSLQPMDGPFL-------EENTNLAISYCFQNPKWRLSVQTHKFI 208 + L+ G L + LA N RL +Q HK + Sbjct: 157 AVSKLIEYRLEQRTGEVLFSPSHRQVDARELADWIVADNLPVRLQLQLHKIL 208 >gi|330834175|ref|YP_004408903.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4] gi|329566314|gb|AEB94419.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4] Length = 210 Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 100/231 (43%), Gaps = 41/231 (17%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M+ Y I EIF ++QGEG GR + F R +GCNL +C +CDT ++ Sbjct: 1 MR-YWIVEIFTSIQGEGTLIGRPSNFVRLAGCNL-----------RCVWCDTKNSWMR-E 47 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 G ++ + + ++ +TGGEPLLQ +PL +L +GF +A+ETNG Sbjct: 48 DGEPMEIEDILSKL-------STSVKWTTITGGEPLLQDILPLAVSLKNKGFRVAIETNG 100 Query: 121 TIEPPQG----IDWICVSPK---AGCDLKIKGGQEL----KLVFPQVNVSPENYIGF--- 166 T++P +D VSPK +G LK + K V + F Sbjct: 101 TLKPKPELRKVVDIFSVSPKLLNSGHRLKYDFSDDWATYYKFVIVNAKEDLKEVKDFVDR 160 Query: 167 ---DFERFSLQPMDGPFLE--ENTNLAISYCFQ-NPKWRLSVQTHKFIGIR 211 D E+ +QP DG L+ + +R+ Q H+ I R Sbjct: 161 QHIDPEKVIVQP-DGNRLDYVYALRELSDAVMELGLPFRVLPQLHRIISYR 210 >gi|304312904|ref|YP_003812502.1| Putative radical activating enzyme [gamma proteobacterium HdN1] gi|301798637|emb|CBL46869.1| Putative radical activating enzyme [gamma proteobacterium HdN1] Length = 218 Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 100/230 (43%), Gaps = 51/230 (22%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE G VF R +GC L +C++CDT + + G Sbjct: 8 LRITEIFHSLQGETRTLGLPTVFVRLTGCPL-----------RCQYCDTAYAF---SGGQ 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 + +++Q+ + + Y +TGGEPL Q + +PL+QAL +G+E+++ET+G + Sbjct: 54 QMSLEQILETV------AGFRTHYVTVTGGEPLAQPNCIPLLQALCDQGYEVSLETSGAL 107 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF--------DFERFS 172 + + ID V DLK G E+ + ++ + + P + + F D+ R Sbjct: 108 DISE-IDARVV---RVVDLKTPGSGEMHRNLYENIKYLQPHDQVKFVLCSRQDYDWARAK 163 Query: 173 L--------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 L P G + T LA R +Q HK + Sbjct: 164 LLEYDLCNRVSDVLFSPSWGQL--DATELAEWILADRLPVRFQMQLHKLL 211 >gi|305663006|ref|YP_003859294.1| coenzyme PQQ synthesis protein, conjectural [Ignisphaera aggregans DSM 17230] gi|304377575|gb|ADM27414.1| coenzyme PQQ synthesis protein, conjectural [Ignisphaera aggregans DSM 17230] Length = 219 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 30/209 (14%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF ++QGEG GR AVF R GCNL + CDT + + G Sbjct: 7 RVSEIFYSIQGEGPFIGRPAVFIRLQGCNLRCTKNSVGWD-----CDTQYAW-DSSGGME 60 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 ++D++ D++ + + R+ V+TGGEP++Q + LI+ L G+ I +ETNGTI Sbjct: 61 ISIDRVVDIVRQ------YQCRHIVITGGEPMIQQREVIELIKRL--DGYAIEIETNGTI 112 Query: 123 EPPQGIDW----ICVSPKAGCDLK---IKGGQELKLVF--PQVNVSPENYIGF---DFER 170 + VSPK ++ I+ LK V + V ++++ + R Sbjct: 113 PLDPDFPVEKVRLNVSPKPHAPIRPEYIRYASCLKFVVASEKDLVFVDSFVKIYGVEPSR 172 Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPKWR 199 L P E N N I C++ K R Sbjct: 173 IWLMPASRNVDEHNRN--IRLCWEYAKLR 199 >gi|331016448|gb|EGH96504.1| radical SAM domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 215 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 59/232 (25%), Positives = 100/232 (43%), Gaps = 51/232 (21%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 3 ETLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT- 50 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 + L D+I + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -----IQTLDDIIGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG 102 Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQ-VNVSPENYIGF-----DFERF 171 ++ V P+ DLK G +E+ + + ++P + + F + + Sbjct: 103 ALDISA------VDPRVSRVVDLKTPGSKEVARNRYENMALLTPNDQVKFVICSREDYDW 156 Query: 172 SLQPMDGPFLEENT---------------NLAISYCFQNPKWRLSVQTHKFI 208 ++ + L+ +LA N RL +Q HK + Sbjct: 157 AVSKLIQYGLDRRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208 >gi|254490155|ref|ZP_05103346.1| radical SAM domain protein, putative [Methylophaga thiooxidans DMS010] gi|224464641|gb|EEF80899.1| radical SAM domain protein, putative [Methylophaga thiooxydans DMS010] Length = 213 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 95/234 (40%), Gaps = 54/234 (23%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M I EIF +LQGE G VF R +GC L +C +CDT++ G Sbjct: 1 MAQCRITEIFYSLQGESRTVGLPTVFVRLTGCPL-----------RCGYCDTEYAFYGGQ 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119 K ++D++E+ + RY +TGGEPL Q + +PL+ AL G E+++ET+ Sbjct: 50 K------MDISDIVEQ---VAAYKPRYVCVTGGEPLAQPNCIPLLTALCDLGVEVSIETS 100 Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLV------FP 154 G ++ + V P+ DLK G E LK V + Sbjct: 101 GAMDISK------VDPRVIRVMDLKTPGSGEESKNRYENIALLESKDQLKFVICHREDYD 154 Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + Y D P+ G + LA N R+ +Q HK++ Sbjct: 155 WACETLAEYQLSDRCEVLFSPIHGELKPAD--LADWIVEDNLPVRMQLQLHKYL 206 >gi|119477238|ref|ZP_01617474.1| probable radical activating enzyme [marine gamma proteobacterium HTCC2143] gi|119449601|gb|EAW30839.1| probable radical activating enzyme [marine gamma proteobacterium HTCC2143] Length = 214 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 64/233 (27%), Positives = 100/233 (42%), Gaps = 51/233 (21%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + EIF +LQGE G VF R +GC L +C +CDT++ Sbjct: 1 MTDLRLTEIFYSLQGETRTVGLPTVFVRLTGCPL-----------RCAYCDTEYAFH--- 46 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119 G ++++ + + + RY +TGGEPL Q + PL+ AL +G+E+++ET+ Sbjct: 47 GGEKWSLQAIQEKV------ASYHPRYVTVTGGEPLAQPNCWPLLTALCDQGYEVSLETS 100 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF--------DFE 169 G I G+D V DLK E+ + ++ + +SP++ I F ++ Sbjct: 101 GAISLL-GVDSRVV---KVMDLKTPASNEMSRNLYENIELLSPQDQIKFVICDRKDYEWA 156 Query: 170 RFSL--------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 RF L P G E+ LA N R VQ HK + Sbjct: 157 RFKLDEHRLVDRVDEVLFSPSFGQI--ESAELAEWILADNLPVRFQVQLHKLL 207 >gi|237800229|ref|ZP_04588690.1| radical SAM domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806417|ref|ZP_04593121.1| radical SAM domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023086|gb|EGI03143.1| radical SAM domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027530|gb|EGI07585.1| radical SAM domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 215 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 59/231 (25%), Positives = 100/231 (43%), Gaps = 51/231 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 ----IQTLDDIVGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNV-SPENYIGF-----DFERFS 172 ++ V P+ DLK G +E+ + + + + +P + + F + ++ Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEVSRNRYENMELLTPNDQVKFVICSREDYDWA 157 Query: 173 LQPMDGPFLEENT---------------NLAISYCFQNPKWRLSVQTHKFI 208 + + LE +LA N RL +Q HK + Sbjct: 158 VSKLIQYGLERRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208 >gi|116048900|ref|YP_792299.1| radical activating enzyme [Pseudomonas aeruginosa UCBPP-PA14] gi|115584121|gb|ABJ10136.1| probable radical activating enzyme [Pseudomonas aeruginosa UCBPP-PA14] Length = 264 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 51/232 (21%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIF +LQGE AG VF R +GC L +C +CDT + + Sbjct: 52 QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 97 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 G ++D + + + + RY +TGGEPL Q + + L++ L G+E+++ET+G Sbjct: 98 GDVVSLDAILERV------ATYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 151 Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNVSPENY---------IGFDF 168 ++ + V P+ DLK G E+ + + + + +N +D+ Sbjct: 152 ALDVSR------VDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDW 205 Query: 169 ERFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208 L +D E LA N RL +Q HK + Sbjct: 206 AVSKLIEYRLDQRAGEVLFSPSHHQVSARELADWIVADNLPVRLQLQLHKIL 257 >gi|28871114|ref|NP_793733.1| radical SAM domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28854364|gb|AAO57428.1| radical SAM domain protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 215 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 51/232 (21%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 3 ETLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT- 50 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -----IQTLDDIVGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG 102 Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQ-VNVSPENYIGF-----DFERF 171 ++ V P+ DLK G +E+ + + ++P + + F + + Sbjct: 103 ALDISA------VDPRVSRVVDLKTPGSKEVARNRYENMALLTPNDQVKFVICSREDYDW 156 Query: 172 SLQPMDGPFLEENT---------------NLAISYCFQNPKWRLSVQTHKFI 208 ++ + L+ +LA N RL +Q HK + Sbjct: 157 AVSKLIQYGLDRRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208 >gi|70732080|ref|YP_261836.1| radical activating enzyme [Pseudomonas fluorescens Pf-5] gi|68346379|gb|AAY93985.1| radical activating enzyme [Pseudomonas fluorescens Pf-5] Length = 215 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 60/231 (25%), Positives = 98/231 (42%), Gaps = 51/231 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I E+F +LQGE AG VF R +GC L +C++CD+ + + G Sbjct: 4 TLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAF---SGG 49 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 + +D L + + RY +TGGEPL Q + +PL+Q L G+E+++ET+G Sbjct: 50 SQRTLDSLLEQV------AGFRPRYVCVTGGEPLAQPNAIPLLQHLCDAGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLVF---PQVNVS 159 ++ V P+ DLK G +E +K V + + Sbjct: 104 LDISA------VDPRVSRILDLKTPGSKEAHRNRYENIELLTANDQVKFVICSREDYDWA 157 Query: 160 PENYIGFDFERFSLQPMDGPFLEE--NTNLAISYCFQNPKWRLSVQTHKFI 208 I + ER + + + P + +LA N RL +Q HK++ Sbjct: 158 VSKLIQYGLERRAGEVLFSPSHHDLNARDLADWIVADNLPVRLQLQLHKYL 208 >gi|213969194|ref|ZP_03397333.1| radical SAM domain protein [Pseudomonas syringae pv. tomato T1] gi|301384811|ref|ZP_07233229.1| radical SAM domain protein [Pseudomonas syringae pv. tomato Max13] gi|302063535|ref|ZP_07255076.1| radical SAM domain protein [Pseudomonas syringae pv. tomato K40] gi|302130601|ref|ZP_07256591.1| radical SAM domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926192|gb|EEB59748.1| radical SAM domain protein [Pseudomonas syringae pv. tomato T1] Length = 215 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 51/232 (21%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 3 ETLRITEIFHSLQGETRTAGLPTVFIRLTGCPL-----------RCQYCDSAYAFSGGT- 50 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -----IQTLDDIVGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG 102 Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQ-VNVSPENYIGF-----DFERF 171 ++ V P+ DLK G +E+ + + ++P + + F + + Sbjct: 103 ALDISA------VDPRVSRVVDLKTPGSKEVARNRYENMALLTPNDQVKFVICSREDYDW 156 Query: 172 SLQPMDGPFLEENT---------------NLAISYCFQNPKWRLSVQTHKFI 208 ++ + L+ +LA N RL +Q HK + Sbjct: 157 AVSKLIQYGLDRRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208 >gi|88810549|ref|ZP_01125806.1| Radical SAM domain protein [Nitrococcus mobilis Nb-231] gi|88792179|gb|EAR23289.1| Radical SAM domain protein [Nitrococcus mobilis Nb-231] Length = 225 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 52/230 (22%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + EIF +LQGE G G VF R +GC L +C +CDT + G Sbjct: 16 LRVTEIFYSLQGEAGTVGAPTVFVRLTGCPL-----------RCHYCDTAYAFH---GGE 61 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 + ++ ++ D + GE ++ +TGGEPL Q + L+ +L RG+ +++ET+G + Sbjct: 62 KMSIIRILDRV------GEHAAKFVTVTGGEPLAQRGCLTLLSSLCDRGYRVSLETSGAL 115 Query: 123 EPPQGIDWICVSPKAG--CDLKIKG-GQELKLVFPQVN-VSPENYIGFDF---------- 168 + V P+ DLK G G+E + + +N + P + + F Sbjct: 116 DVQA------VDPRVIKVMDLKTPGSGEERRNRWENLNYLRPHDELKFVICNRQDYDWAR 169 Query: 169 ---------ERFSLQPMDGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFI 208 ER+++ + E ++ L + + RL +Q HK++ Sbjct: 170 TKVSELKLGERWTV-FFSASYGELSSRLLADWILADHLNVRLQIQLHKYL 218 >gi|307352768|ref|YP_003893819.1| Radical SAM domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307156001|gb|ADN35381.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571] Length = 204 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 48/228 (21%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF ++QGEG + G + F R SGCNL +CR+CDT G+ Sbjct: 2 KVFEIFPSIQGEGPYQGIPSAFIRLSGCNL-----------RCRWCDTPKTQ-DGSSSEE 49 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 VD++ +++ ++ + +TGGEPL+Q D + L++ L++ G+ + +ETNGTI Sbjct: 50 MTVDEVFGQVKKLGLS------HVCITGGEPLIQQDELLSLLKDLHEDGYIVEIETNGTI 103 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE------------- 169 +P +++ V D+K E + P + + F E Sbjct: 104 DPVPVMEYSSV----CMDIKCPSSGEKSFAPFVKKLRPSDCVKFVVEGKEDLEYMTGLLD 159 Query: 170 ------RFSLQPMDGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFIGI 210 + P+ G Y + R +Q HK +G+ Sbjct: 160 DIPSYVEVCVSPVWGSDS----RFIADYIMKLKRPVRFQLQLHKILGV 203 >gi|327481488|gb|AEA84798.1| radical activating enzyme [Pseudomonas stutzeri DSM 4166] Length = 224 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 62/232 (26%), Positives = 88/232 (37%), Gaps = 51/232 (21%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 I EIF +LQGE +G VF R +GC L +C++CDT + + Sbjct: 12 MTLRITEIFYSLQGETRTSGLPTVFVRLTGCPL-----------RCQYCDTAYAF---SG 57 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 G +D + + + RY +TGGEPL Q + VPL+Q L G+E+++ET+G Sbjct: 58 GELMALDAILERVAA------YNPRYVCVTGGEPLAQPNCVPLLQRLCDAGYEVSLETSG 111 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQE-----------------LKLVFPQVN-----V 158 ++ + + DLK G E +K V V Sbjct: 112 ALDISPVDERVS----RVVDLKTPGSAEVGRNRYENIVHLTRNDQVKFVICSREDYDWAV 167 Query: 159 SPENYIGFDFE--RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 S G D P G LA N RL +Q HK I Sbjct: 168 SKLIEYGLDRRAGEVLFSPSHGQVDVRA--LADWIVADNLPVRLQLQLHKII 217 >gi|330872644|gb|EGH06793.1| radical SAM domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330964833|gb|EGH65093.1| radical SAM domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 215 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 101/232 (43%), Gaps = 51/232 (21%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 3 ETLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT- 50 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 -----IQTLDDIVGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG 102 Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNV-SPENYIGF-----DFERF 171 ++ V P+ DLK G +E+ + + + + +P + + F + + Sbjct: 103 ALDISA------VDPRVSRVVDLKTPGSKEVARNRYENMELLTPNDQVKFVICSREDYDW 156 Query: 172 SLQPMDGPFLEENT---------------NLAISYCFQNPKWRLSVQTHKFI 208 ++ + L+ +LA N RL +Q HK + Sbjct: 157 AVSKLIQYGLDRRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208 >gi|218893054|ref|YP_002441923.1| putative radical activating enzyme [Pseudomonas aeruginosa LESB58] gi|218773282|emb|CAW29094.1| probable radical activating enzyme [Pseudomonas aeruginosa LESB58] Length = 264 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 51/232 (21%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIF +LQGE AG VF R +GC L +C +CDT + + Sbjct: 52 QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 97 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 G ++D + + + + RY +TGGEPL Q + + L++ L G+E+++ET+G Sbjct: 98 GDVVSLDAIFERVAA------YKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 151 Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNVSPENY---------IGFDF 168 ++ + V P+ DLK G E+ + + + + +N +D+ Sbjct: 152 ALDVSR------VDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDW 205 Query: 169 ERFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208 L +D E LA N RL +Q HK + Sbjct: 206 AVSKLIEYRLDQRAGEVLFSPSHHQVSARELADWIVADNLPVRLQLQLHKIL 257 >gi|49082982|gb|AAT50891.1| PA0975 [synthetic construct] Length = 265 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 51/232 (21%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIF +LQGE AG VF R +GC L +C +CDT + + Sbjct: 52 QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 97 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 G ++D + + + + RY +TGGEPL Q + + L++ L G+E+++ET+G Sbjct: 98 GDVVSLDAIFERVAA------YKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 151 Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNVSPENY---------IGFDF 168 ++ + V P+ DLK G E+ + + + + +N +D+ Sbjct: 152 ALDVSR------VDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDW 205 Query: 169 ERFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208 L +D E LA N RL +Q HK + Sbjct: 206 AVSKLIEYRLDQRAGEVLFSPSHHQVSARELADWIVADNLPVRLQLQLHKIL 257 >gi|254239323|ref|ZP_04932646.1| hypothetical protein PACG_05520 [Pseudomonas aeruginosa C3719] gi|126171254|gb|EAZ56765.1| hypothetical protein PACG_05520 [Pseudomonas aeruginosa C3719] Length = 264 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 51/232 (21%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIF +LQGE AG VF R +GC L +C +CDT + + Sbjct: 52 QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 97 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 G ++D + + + + RY +TGGEPL Q + + L++ L G+E+++ET+G Sbjct: 98 GDVVSLDAIFERVAA------YKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 151 Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNVSPENY---------IGFDF 168 ++ + V P+ DLK G E+ + + + + +N +D+ Sbjct: 152 ALDVSR------VDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDW 205 Query: 169 ERFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208 L +D E LA N RL +Q HK + Sbjct: 206 AVSKLIEYRLDQRAGEVLFSPSHHQVSARELADWIVADNLPVRLQLQLHKIL 257 >gi|15596172|ref|NP_249666.1| radical activating enzyme [Pseudomonas aeruginosa PAO1] gi|254245258|ref|ZP_04938580.1| hypothetical protein PA2G_06150 [Pseudomonas aeruginosa 2192] gi|9946883|gb|AAG04364.1|AE004531_1 probable radical activating enzyme [Pseudomonas aeruginosa PAO1] gi|126198636|gb|EAZ62699.1| hypothetical protein PA2G_06150 [Pseudomonas aeruginosa 2192] Length = 264 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 51/232 (21%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIF +LQGE AG VF R +GC L +C +CDT + + Sbjct: 52 QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 97 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 G ++D + + + + RY +TGGEPL Q + + L++ L G+E+++ET+G Sbjct: 98 GDVVSLDAIFERVAA------YKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 151 Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNVSPENY---------IGFDF 168 ++ + V P+ DLK G E+ + + + + +N +D+ Sbjct: 152 ALDVSR------VDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDW 205 Query: 169 ERFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208 L +D E LA N RL +Q HK + Sbjct: 206 AVSKLIEYRLDQRAGEVLFSPSHHQVSARELADWIVADNLPVRLQLQLHKIL 257 >gi|146283135|ref|YP_001173288.1| radical activating enzyme [Pseudomonas stutzeri A1501] gi|145571340|gb|ABP80446.1| probable radical activating enzyme [Pseudomonas stutzeri A1501] Length = 213 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 91/232 (39%), Gaps = 51/232 (21%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 I EIF +LQGE +G VF R +GC L +C++CDT + + Sbjct: 1 MTLRITEIFYSLQGETRTSGLPTVFVRLTGCPL-----------RCQYCDTAYAF---SG 46 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 G +D + + + RY +TGGEPL Q + VPL+Q L G+E+++ET+G Sbjct: 47 GELMALDAILERVAA------YNPRYVCVTGGEPLAQPNCVPLLQRLCDAGYEVSLETSG 100 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQEL------KLVF----PQVNVSPENYIGFDFER 170 ++ + + DLK G E+ +V QV + +D+ Sbjct: 101 ALDISPVDERVS----RVVDLKTPGSAEVGRNRYENIVHLTRNDQVKFVICSREDYDWAV 156 Query: 171 FSL--------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 L P G LA N RL +Q HK I Sbjct: 157 SKLIEYGLARRAGEVLFSPSHGQVDVRA--LADWIVADNLPVRLQLQLHKII 206 >gi|317505338|ref|ZP_07963266.1| GntS protein [Prevotella salivae DSM 15606] gi|315663552|gb|EFV03291.1| GntS protein [Prevotella salivae DSM 15606] Length = 141 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 62/147 (42%), Positives = 85/147 (57%), Gaps = 9/147 (6%) Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQG 127 + D+I I+ K+ + VLTGGEP LQVD LI AL+ GF +A+E+NGT PPQ Sbjct: 1 MTIDDIISA--ISKWKKAGFVVLTGGEPTLQVDDKLIDALHASGFYVAMESNGTRVPPQN 58 Query: 128 IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT-- 185 +DW+ VSPK + + ELK +F ++ + I D+ + LQP D +N Sbjct: 59 LDWLTVSPKGS--VVVTKCNELKCIFDGESMVDDAGIQADY--YYLQPCDVGDKAKNQVI 114 Query: 186 -NLAISYCFQNPKWRLSVQTHKFIGIR 211 ISY +PKWRLS+QTHK IGI+ Sbjct: 115 LQACISYILSHPKWRLSLQTHKMIGIQ 141 >gi|126180149|ref|YP_001048114.1| radical SAM domain-containing protein [Methanoculleus marisnigri JR1] gi|125862943|gb|ABN58132.1| Radical SAM domain protein [Methanoculleus marisnigri JR1] Length = 202 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 59/227 (25%), Positives = 95/227 (41%), Gaps = 48/227 (21%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +LQGEG + GR F R +GCNL +C +CDT + G Sbjct: 3 VSEIFRSLQGEGKNQGRPCTFIRLAGCNL-----------RCAWCDTPYAR---EGGEEM 48 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123 +V Q+ D + W+ G + +TGGEPLLQ + L++ + G+ + +ETNGT + Sbjct: 49 SVTQVLDRV---WLL---RGTHICITGGEPLLQREDVLKLLEKFSLHGYTVEIETNGTCD 102 Query: 124 -------PPQGIDWICVSPKAGCDL------------KIKGGQELKLVFPQVNVSPENYI 164 +D C S DL K E L++ + +S Sbjct: 103 FRDMQPYASICMDVKCPSSGEKSDLSLLSFITPRDCVKFVVADEDDLLYARAVMSRCEIR 162 Query: 165 GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 G + P++G + + +N R +Q HK +G++ Sbjct: 163 G----EVFISPVEGSDYRAVADQIVE---ENLPVRFQLQLHKILGVK 202 >gi|313105862|ref|ZP_07792125.1| putative radical activating enzyme [Pseudomonas aeruginosa 39016] gi|310878627|gb|EFQ37221.1| putative radical activating enzyme [Pseudomonas aeruginosa 39016] Length = 215 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 51/232 (21%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIF +LQGE AG VF R +GC L +C +CDT + + Sbjct: 3 QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 48 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 G ++D + + + + RY +TGGEPL Q + + L++ L G+E+++ET+G Sbjct: 49 GDVVSLDAILERV------ATYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 102 Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNVSPENY---------IGFDF 168 ++ + V P+ DLK G E+ + + + + +N +D+ Sbjct: 103 ALDVSR------VDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDW 156 Query: 169 ERFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208 L +D E LA N RL +Q HK + Sbjct: 157 AVSKLIEYRLDQRAGEVLFSPSHYQVSARELADWIVADNLPVRLQLQLHKIL 208 >gi|77163686|ref|YP_342211.1| radical SAM domain-containing protein [Nitrosococcus oceani ATCC 19707] gi|254436167|ref|ZP_05049674.1| radical SAM domain protein, putative [Nitrosococcus oceani AFC27] gi|76882000|gb|ABA56681.1| Radical SAM domain protein [Nitrosococcus oceani ATCC 19707] gi|207089278|gb|EDZ66550.1| radical SAM domain protein, putative [Nitrosococcus oceani AFC27] Length = 213 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 94/232 (40%), Gaps = 50/232 (21%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK I EIF +LQGE G F R +GC L +C +CDT++ Sbjct: 1 MKRLRITEIFYSLQGEARSVGWPTAFVRLTGCPL-----------RCHYCDTEYAF---Q 46 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETN 119 G +D + D + E + R+ +TGGEPL Q + L+ L G+E+++ET+ Sbjct: 47 GGRWMALDGILDAVAEFGV------RHVTVTGGEPLAQSACLGLLTRLCDAGYEVSLETS 100 Query: 120 GTIEPPQ-------GIDWICVSPKAGCDLK--------IKGGQELKLVFPQVNVSPENYI 164 G ++ +DW P +G + + + ++KLV N ++ Sbjct: 101 GALDISAVDRRVIKVMDWKT--PGSGEEARNLSTNLEHLSSQDQVKLVLC--NRHDYDWA 156 Query: 165 GFDFERFSL--------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 ER L P T+LA + R+ +Q HK++ Sbjct: 157 KGVLERHRLTEYCEVLFSPSYEQLSP--TDLADWILADHLPVRMQIQLHKYL 206 >gi|296390666|ref|ZP_06880141.1| radical activating enzyme [Pseudomonas aeruginosa PAb1] Length = 215 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 51/232 (21%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIF +LQGE AG VF R +GC L +C +CDT + + Sbjct: 3 QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 48 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 G ++D + + + + RY +TGGEPL Q + + L++ L G+E+++ET+G Sbjct: 49 GDVVSLDAILERV------ATYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 102 Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNVSPENY---------IGFDF 168 ++ + V P+ DLK G E+ + + + + +N +D+ Sbjct: 103 ALDVSR------VDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDW 156 Query: 169 ERFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208 L +D E LA N RL +Q HK + Sbjct: 157 AVSKLIEYRLDQRAGEVLFSPSHHQVSARELADWIVADNLPVRLQLQLHKIL 208 >gi|317054935|ref|YP_004103402.1| Radical SAM domain-containing protein [Ruminococcus albus 7] gi|315447204|gb|ADU20768.1| Radical SAM domain protein [Ruminococcus albus 7] Length = 224 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 100/232 (43%), Gaps = 40/232 (17%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + E F+++ GEG +AG +A+F RF+GCNL QC +CDT + Sbjct: 1 MGTLKLAENFVSINGEGRYAGELALFMRFAGCNL-----------QCDWCDTKWANGADA 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119 QLA++ E+ LTGGEPLLQ D+ LI ALN RG ++ +ETN Sbjct: 50 PFTEKTAVQLAEIAEDA--ADGYGLHRVTLTGGEPLLQKDIAELINALNDRGLDVEIETN 107 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIK-GGQELKLVFPQVNVSPENYI-------GFDFER- 170 G++ + V P D K+ G E ++ ++ E+ D +R Sbjct: 108 GSVPIAPVAEICRVRPVFTMDYKLPSSGMESRMCIENLSQLKESDTLKFVCASKEDLKRA 167 Query: 171 ------------FSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208 L P+ G ++ + + + K RL +Q HKFI Sbjct: 168 VWVLDTYEPVCMVYLSPVFGRIEPKDM---VEFMKEKKLGKVRLQLQLHKFI 216 >gi|330502228|ref|YP_004379097.1| radical SAM domain-containing protein [Pseudomonas mendocina NK-01] gi|328916514|gb|AEB57345.1| radical SAM domain-containing protein [Pseudomonas mendocina NK-01] Length = 226 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 89/234 (38%), Gaps = 55/234 (23%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIF +LQGE AG VF R +GC L +C++CDT + + Sbjct: 14 ETLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDTAYAF---SG 59 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 G +D++ D + Y +TGGEPL Q + + L+ L G+E+++ET+G Sbjct: 60 GEIVTLDRILDQVAA------YRPHYVCVTGGEPLAQPNCISLLTRLCDAGYEVSLETSG 113 Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLVFP------- 154 + D V P+ DLK G E +K V Sbjct: 114 AL------DVAAVDPRVSKVLDLKTPGSAEVQRNRYENIQWLTRNDQVKFVICSREDYDW 167 Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 ++ E+ + P E LA N RL +Q HK + Sbjct: 168 AISKLIEHDLAARAGEVLFSP--SHTQVEARALAEWIIADNLPVRLQLQLHKIL 219 >gi|71735883|ref|YP_275904.1| radical SAM domain-containing protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487001|ref|ZP_05641042.1| radical SAM domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298488200|ref|ZP_07006236.1| Queuosine Biosynthesis QueE Radical SAM [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71556436|gb|AAZ35647.1| radical SAM domain protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157258|gb|EFH98342.1| Queuosine Biosynthesis QueE Radical SAM [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323043|gb|EFW79132.1| radical SAM domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320329685|gb|EFW85674.1| radical SAM domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330877970|gb|EGH12119.1| radical SAM domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330892249|gb|EGH24910.1| radical SAM domain-containing protein [Pseudomonas syringae pv. mori str. 301020] gi|330988978|gb|EGH87081.1| radical SAM domain-containing protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009357|gb|EGH89413.1| radical SAM domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 215 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 51/231 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 ----IQTLDDIVGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNV-SPENYIGF-----DFERFS 172 ++ V P+ DLK G +E+ + + + + + + + F + ++ Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEVSRNRYENIELLTRNDQVKFVICSREDYDWA 157 Query: 173 LQPMDGPFLEENT---------------NLAISYCFQNPKWRLSVQTHKFI 208 + + LE +LA N RL +Q HK + Sbjct: 158 VSKLIQYGLERRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208 >gi|254516700|ref|ZP_05128759.1| radical SAM domain protein [gamma proteobacterium NOR5-3] gi|219675123|gb|EED31490.1| radical SAM domain protein [gamma proteobacterium NOR5-3] Length = 226 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 90/234 (38%), Gaps = 55/234 (23%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIF +LQGE G VF R +GC L +C +CDT++ Sbjct: 14 QTLRITEIFYSLQGEARTVGLPTVFVRLTGCPL-----------RCLYCDTEYAFH---G 59 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 G + +A + + Y +TGGEPL Q + +PL+ L +G+E+++ET+G Sbjct: 60 GEIMTFEHIAGQVAQHAPA------YVTVTGGEPLAQPNCLPLLSLLCDQGYEVSLETSG 113 Query: 121 TIEPPQGIDWICVSPKA--GCDLKIKGGQE-----------------LKLVFPQVNVSPE 161 + V P+ DLK E LK V + + Sbjct: 114 AMPVAD------VDPRVVKVLDLKTPASGEAGRNDYANIEHLTSNDQLKFVIC--DRNDY 165 Query: 162 NYIGFDFERFSLQPM--DGPFLEENTNLA----ISYCFQ-NPKWRLSVQTHKFI 208 + F + +L P D F + LA + RL +Q HK + Sbjct: 166 EWARFKLDELALVPRVSDVLFSPSHEQLAPRELAEWILADRLPVRLQLQLHKLL 219 >gi|289581999|ref|YP_003480465.1| radical SAM protein [Natrialba magadii ATCC 43099] gi|289531552|gb|ADD05903.1| Radical SAM domain protein [Natrialba magadii ATCC 43099] Length = 280 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 54/145 (37%), Positives = 70/145 (48%), Gaps = 19/145 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I E+F +LQGEG AG +VF R SGCNL +C FCD+ + T Sbjct: 24 LPINELFYSLQGEGVLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPTH-A 71 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 +D + D IE + + VLTGGEPLL V L++AL++RG+ VETNGTI Sbjct: 72 WMELDAILDEIESH------DADHVVLTGGEPLLHDASVALLEALDERGYHTTVETNGTI 125 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQ 147 ID +SPK Sbjct: 126 YRDAPIDLASISPKLASSTPTPERD 150 >gi|119896705|ref|YP_931918.1| putative radical activating enzyme [Azoarcus sp. BH72] gi|119669118|emb|CAL93031.1| conserved hypothetical radical activating enzyme [Azoarcus sp. BH72] Length = 220 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 85/231 (36%), Gaps = 54/231 (23%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + EIF ++QGE G F R +GC L +C +CDT + G Sbjct: 11 LRLTEIFASIQGESTRVGLPTTFVRLTGCPL-----------RCSWCDTAYAFTGGE--- 56 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 L+D++++ G R+ +TGGEPL Q + L+ AL G+ +++ET+G + Sbjct: 57 ---ARALSDVLDDVAALGL---RHVCVTGGEPLAQKYCLALLTALCDAGYSVSLETSGAL 110 Query: 123 EPPQGIDWICVSPKAG--CDLKIKGG-----------------QELKLV------FPQVN 157 + V P+ DLK G ELK+V + Sbjct: 111 DIGG------VDPRVSRVMDLKAPGSAEVTRNRLENIPLLRARDELKIVLADQADYDWAR 164 Query: 158 VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 ++ L P+ G LA R +Q HK + Sbjct: 165 AMIADHDLAARCPVLLSPVAGTLDPA--QLAEWIVRDRLPVRFQLQLHKIL 213 >gi|329893688|ref|ZP_08269822.1| Queuosine Biosynthesis QueE Radical SAM [gamma proteobacterium IMCC3088] gi|328923615|gb|EGG30927.1| Queuosine Biosynthesis QueE Radical SAM [gamma proteobacterium IMCC3088] Length = 230 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 63/232 (27%), Positives = 93/232 (40%), Gaps = 51/232 (21%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIF +LQGE G VF R +GC L +C +CDT++ GT+ Sbjct: 18 QTLRISEIFYSLQGETRTLGLPTVFIRLTGCPL-----------RCVYCDTEYAFHGGTQ 66 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 L D++E+ R+ +TGGEPL Q + PL+Q L G+E+++ET+G Sbjct: 67 ------IALGDILEQ---AAAFNTRFVTVTGGEPLAQPNCWPLLQMLCDEGYEVSLETSG 117 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQE----------LKLVFPQVNVSPENYIGFDFER 170 + +D V DLK G E L + QV + +D+ R Sbjct: 118 ALSV-ADVDARVV---KVLDLKTPGSGESHRNDYENIALLNLHDQVKFVITDREDYDWAR 173 Query: 171 FSL--------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 F + P+ G T LA R +Q HK + Sbjct: 174 FKVDELGLVGRVSDILFSPVHGKLTP--TQLADWILADRLPVRFQLQLHKLL 223 >gi|55378864|ref|YP_136714.1| hypothetical protein rrnAC2164 [Haloarcula marismortui ATCC 43049] gi|55231589|gb|AAV47008.1| unknown [Haloarcula marismortui ATCC 43049] Length = 260 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 67/138 (48%), Gaps = 19/138 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I E+F +LQGEG AG +VF R SGCNL +C FCD+ + T Sbjct: 24 LPINELFQSLQGEGRLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPTHD- 71 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + VD + IEE + + VLTGGEPL+ L+ L RG+ VETNGT+ Sbjct: 72 WFTVDDVLAAIEE------YDANHVVLTGGEPLIHDSSEDLLARLTDRGYHTTVETNGTV 125 Query: 123 EPPQGIDWICVSPKAGCD 140 P ID VSPK Sbjct: 126 VPDAPIDLASVSPKLASS 143 >gi|119493534|ref|ZP_01624200.1| hypothetical protein L8106_18202 [Lyngbya sp. PCC 8106] gi|119452651|gb|EAW33832.1| hypothetical protein L8106_18202 [Lyngbya sp. PCC 8106] Length = 204 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 94/223 (42%), Gaps = 33/223 (14%) Query: 1 MKLYSIKEIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M +I E F T+QGEG AG F R +GC + QC +CDT + G Sbjct: 1 MNEIAIHETFQNTIQGEGFWAGTPVDFIRLAGCPV-----------QCHYCDTGYAN--G 47 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 +G NV LI E V++GGEP + +P L++ + + +ET Sbjct: 48 GEGLPRNVRSFEALIAEL------RSPKVVISGGEPFIYPQLPDLVKCIEATNRTVFIET 101 Query: 119 NGTIEPP-QGIDWICVSPKAG-------CDLKIKGGQELKLVFPQVNVSP--ENYIGFDF 168 +G P WI +SPK D + E+KLV + + Y+ Sbjct: 102 SGCFWQPISSSVWITLSPKEHLNPHYPVVDQMWERASEIKLVIETGSELKYYDQYLSLKP 161 Query: 169 ER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + LQP + + L + Q P +RLS+Q HK++G+ Sbjct: 162 QIPVFLQP-EWTQRDYTLPLVLELLQQYPDYRLSLQLHKYVGV 203 >gi|193215257|ref|YP_001996456.1| radical SAM domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193088734|gb|ACF14009.1| Radical SAM domain protein [Chloroherpeton thalassium ATCC 35110] Length = 219 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 58/233 (24%), Positives = 94/233 (40%), Gaps = 49/233 (21%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + EIF ++QGE AG VF R SGC+L +C +CDT + G Sbjct: 1 MLKVNEIFHSIQGESSKAGWPCVFIRLSGCDL-----------RCSYCDTGYAFFD---G 46 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 ++ +++ + + + R +TGGEPLLQ +V PL+ AL + G+E+ +ET G Sbjct: 47 KEFSQEEILEQV------AFYKTRLVEITGGEPLLQPNVYPLMTALCEAGYEVLLETGGH 100 Query: 122 IEPPQG-------IDWICVSP-------KAGCDLKIKGGQ------ELKLVFPQVNVSPE 161 + + ID S +L I + E K+V Sbjct: 101 HDVEKVDPRVYKIIDIKTPSSEMSEWNCYRNLELSIAEAKSGVLKTEFKIVLSSEG--DY 158 Query: 162 NYIGFDFERFSL---QPM--DGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFI 208 + ER+ L P+ F + + + RL +Q HK+I Sbjct: 159 RWAKNLIERYDLARFVPVIFSAAFGALHPRQIAEWILADHLPVRLQLQLHKYI 211 >gi|254674031|emb|CBA09815.1| conserved hypothetical protein [Neisseria meningitidis alpha275] Length = 208 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 84/205 (40%), Gaps = 36/205 (17%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 G AVF R CNL C +CDTD++ + + L+D++ Sbjct: 26 GMPAVFVRLGKCNL-----------ACGWCDTDYLT--------FGMMSLSDIL---GCL 63 Query: 81 GEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139 R ++TGGEP +Q + L+ L G+ + +ETNG P ID++ SPKA Sbjct: 64 KTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLNPAPPQIDYVATSPKACY 123 Query: 140 DLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQPM--DGPFLEENTNLAIS 190 K + E+++V ++ + L P DG +T I Sbjct: 124 AAKYENSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSPCEQDGAMNIYDTIRQIG 183 Query: 191 YCFQNP----KWRLSVQTHKFIGIR 211 P W+LSVQTHK+ GI Sbjct: 184 ILNSRPDASVHWQLSVQTHKWAGIE 208 >gi|113474000|ref|YP_720061.1| hypothetical protein Tery_0080 [Trichodesmium erythraeum IMS101] gi|110165048|gb|ABG49588.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101] Length = 207 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 57/221 (25%), Positives = 90/221 (40%), Gaps = 33/221 (14%) Query: 4 YSIKEIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I E F T+QGEG AG F R +GC + C +CDT + G Sbjct: 7 IPIHETFQKTIQGEGYWAGTPVDFIRLAGCPV-----------GCHYCDTGYA--DGGIS 53 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 + L LI E + V++GGEP + +P LI + G ++++ET+G Sbjct: 54 LPRQIQTLDKLINELF------SPRVVISGGEPFIHKQLPALINRIEATGRQVSIETSGC 107 Query: 122 IEPPQGID-WICVSPKAGCDLKIK-------GGQELKLVFP---QVNVSPENYIGFDFER 170 + W+ +SPK K E+KLV ++ + + + Sbjct: 108 YWQNISPNAWVTLSPKEHISHKYPIVPSMWTRASEIKLVIETGKELEFYSKILLLKNQTP 167 Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 LQP + + L + P RLS+Q HK++GI+ Sbjct: 168 VFLQP-EWYNRDFTLPLVQKLLQEYPHCRLSIQLHKYLGIK 207 >gi|282895310|ref|ZP_06303512.1| hypothetical protein CRD_00006 [Raphidiopsis brookii D9] gi|281199616|gb|EFA74476.1| hypothetical protein CRD_00006 [Raphidiopsis brookii D9] Length = 208 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 33/221 (14%) Query: 4 YSIKEIFLT-LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I E F + +QGEG G + F R SGC L C +CDT + G Sbjct: 8 LPIHETFQSTVQGEGYWTGSLVDFIRLSGCPL-----------GCPWCDTGYA-DGGANL 55 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 R+ + +L+ E V++GGEP + +P L+QAL G ++++ET+G+ Sbjct: 56 PRFE-RTIGELLAEIK------SPRIVISGGEPFIHKHLPELVQALLGAGKQVSIETSGS 108 Query: 122 IEPPQGID-WICVSPKAGCDLKIK-------GGQELKLVFP---QVNVSPENYIGFDFER 170 + WI +SPK + K E K+V +++ E Sbjct: 109 FWKEVSLSAWITLSPKEHINPKYPVQNQFWSRANEAKIVIETGQEIDFYQEYLSARPDLY 168 Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 LQP + ++ L + Q P ++LS+QTHK+IG++ Sbjct: 169 VYLQP-EWNSSSKSLALILQLLQQKPDYKLSLQTHKYIGLQ 208 >gi|289626505|ref|ZP_06459459.1| radical SAM domain-containing protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650951|ref|ZP_06482294.1| radical SAM domain-containing protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330868621|gb|EGH03330.1| radical SAM domain-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 215 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 51/231 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 ----IHTLDDIVGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNV-SPENYIGF-----DFERFS 172 ++ V P+ DLK G +E+ + + + + + + + F + ++ Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEVSRNRYENIELLTRNDQVKFVICSREDYDWA 157 Query: 173 LQPMDGPFLEENT---------------NLAISYCFQNPKWRLSVQTHKFI 208 + + LE +LA N RL +Q HK + Sbjct: 158 VSKLIQYGLERRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208 >gi|330975318|gb|EGH75384.1| radical SAM family protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 215 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 51/231 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 ----IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGG----------QELKLVFPQVNVSPENYIGFDFE 169 ++ V P+ DLK G EL QV + +D+ Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWA 157 Query: 170 RFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208 L +D E + +LA N RL +Q HK + Sbjct: 158 VSKLIQYGLDRRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208 >gi|217969210|ref|YP_002354444.1| radical SAM protein [Thauera sp. MZ1T] gi|217506537|gb|ACK53548.1| Radical SAM domain protein [Thauera sp. MZ1T] Length = 223 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 57/231 (24%), Positives = 83/231 (35%), Gaps = 54/231 (23%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE G VF R +GC L +C +CDT + + G Sbjct: 14 LRITEIFASLQGESTRVGLPTVFVRLTGCPL-----------RCTWCDTAYAF---SGGE 59 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +D + + + R+ +TGGEPL Q +PL+ AL G ++++ET+G + Sbjct: 60 TRTLDDILAEVASHGL------RHVCVTGGEPLAQKGCLPLLAALCDAGHDVSLETSGAL 113 Query: 123 EPPQGIDWICVSPKAG--CDLKIKGG-----------------QELKLVFPQVNVSPENY 163 + V P+ DLK G ELK V Sbjct: 114 DIAG------VDPRVSRIVDLKAPGSGELARNRWENLALLCAHDELKFVLADAADYAWAR 167 Query: 164 IGFDFERFS------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 R + L P+ G LA R +Q HK + Sbjct: 168 QQIAEHRLAERCGVLLSPVAGALDPA--ELAGWIVRDRLPVRFQLQLHKIL 216 >gi|254427312|ref|ZP_05041019.1| radical SAM domain protein [Alcanivorax sp. DG881] gi|196193481|gb|EDX88440.1| radical SAM domain protein [Alcanivorax sp. DG881] Length = 213 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 91/231 (39%), Gaps = 53/231 (22%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + EIF +LQGE GR VF R +GC +C +CDT++ + G Sbjct: 3 LRLTEIFHSLQGESRTVGRPTVFVRLTGCP-----------QRCVWCDTEYAF---SGGE 48 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 ++ + + + + +Y +TGGEPL Q + +PL+ AL G+++++ET G + Sbjct: 49 KWTLAAIREQVAAHG------AQYVTVTGGEPLAQPNCLPLLTALCDDGYQVSLETGGAM 102 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQE----------LKLVFPQVNVSPENYIGFDFERFS 172 + + + V DLK G E L QV + +D+ RF Sbjct: 103 DIAGVDERVSV----VMDLKAPGSGEQHNNRLENIPLLKAHHQVKFVLADRKDYDWARFM 158 Query: 173 LQPMDGPFLEENT---------------NLAISYCFQNPKWRLSVQTHKFI 208 L D L + LA R +Q HK++ Sbjct: 159 L---DQHQLHKRVSDVLFSPVQDGLAPGELADWIVADRLPVRFQLQLHKYL 206 >gi|330936708|gb|EGH40896.1| radical SAM family protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 215 Score = 160 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 51/231 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 ----IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGG----------QELKLVFPQVNVSPENYIGFDFE 169 ++ V P+ DLK G EL QV + +D+ Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWA 157 Query: 170 RFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208 L +D E + +LA N RL +Q HK + Sbjct: 158 VSKLIQYGLDRRVGEVLFSASHHELKGHDLADWIVADNLPVRLQMQLHKIL 208 >gi|110833622|ref|YP_692481.1| radical activating enzyme [Alcanivorax borkumensis SK2] gi|110646733|emb|CAL16209.1| radical activating enzyme [Alcanivorax borkumensis SK2] Length = 213 Score = 160 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 91/230 (39%), Gaps = 51/230 (22%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + EIF +LQGE GR VF R +GC +C +CDT++ G K Sbjct: 3 LRLTEIFHSLQGESRTVGRPTVFVRLTGCP-----------QRCVWCDTEYAFSGGEKW- 50 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 LA ++EE G +Y +TGGEPL Q +PL++ L G+++++ET G + Sbjct: 51 -----SLAAILEEVAALG---AQYVTVTGGEPLAQPSCLPLLKTLCDEGYQVSLETGGAM 102 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQE----------LKLVFPQVNVSPENYIGFDFERFS 172 + + + V DLK G E L QV + +D+ RF Sbjct: 103 DIAGVDERVSV----VMDLKAPGSGEQHNNRLSNIALLKAHHQVKFVLADRKDYDWARFM 158 Query: 173 L--------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 L P+ G + LA R +Q HK + Sbjct: 159 LDQYQLHQRVSDVLFSPVQGTLAPGD--LANWIVEDRLPVRFQLQLHKLL 206 >gi|104783064|ref|YP_609562.1| radical activating enzyme [Pseudomonas entomophila L48] gi|95112051|emb|CAK16778.1| putative radical activating enzyme [Pseudomonas entomophila L48] Length = 215 Score = 160 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 57/229 (24%), Positives = 94/229 (41%), Gaps = 47/229 (20%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I E+F +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGTVR 52 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 +D + + + + RY +TGGEPL Q + +PL+Q L G+E+++ET+G Sbjct: 53 ---TLDSILEQV------AGFKPRYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQE-----------------LKLVF---PQVNVSPE 161 ++ + DLK G +E +K V + + Sbjct: 104 LDIAGTDTRVS----RVVDLKTPGSEESHRNRYENIELLTRNDQVKFVICSREDYDWAVS 159 Query: 162 NYIGFDFERFSLQPMDGPFLEE--NTNLAISYCFQNPKWRLSVQTHKFI 208 I F+ + + + P + T+LA N R +Q HK + Sbjct: 160 KLIQFNLAERAGEVLFSPSHHQVSATDLADWIVADNLPVRFQLQLHKLL 208 >gi|289548016|ref|YP_003473004.1| radical SAM protein [Thermocrinis albus DSM 14484] gi|289181633|gb|ADC88877.1| Radical SAM domain protein [Thermocrinis albus DSM 14484] Length = 219 Score = 160 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 97/227 (42%), Gaps = 38/227 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + EI+ +LQGEG G +VF R GCNL +C +CD G G Sbjct: 12 LKVSEIYPSLQGEGLLVGTPSVFVRLQGCNL-----------RCPWCDQPESLHPG-GGA 59 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 +V+ + + E R+ V+TGGEP Q L++ L K GF + +ETNGT+ Sbjct: 60 LMSVEDVIGKVRE------YPHRHVVITGGEPFTQSFLTLLVEELLKEGFSVQIETNGTL 113 Query: 123 EPPQGID------WICVSPKAGCDL-----KIKGGQELKLVFPQ-----VNVSPENYIGF 166 +G+D I +SPK + +ELK V + + P Sbjct: 114 WQ-KGMDTLASHIHITLSPKGVASWFVHPKVLLYARELKWVVDHLLTLDIILMPSFRRFL 172 Query: 167 DFERFSLQPMDGP--FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + ER LQP FL++ +L + R+ Q HK +G++ Sbjct: 173 EEERVVLQPEGNKEIFLQKALSLQEELLSLGYRVRVLPQLHKLLGLK 219 >gi|330950598|gb|EGH50858.1| radical SAM family protein [Pseudomonas syringae Cit 7] Length = 215 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 51/231 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 ----IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDSGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGG----------QELKLVFPQVNVSPENYIGFDFE 169 ++ V P+ DLK G EL QV + +D+ Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWA 157 Query: 170 RFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208 L +D E + +LA N RL +Q HK + Sbjct: 158 VSKLIQYGLDRRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208 >gi|107100431|ref|ZP_01364349.1| hypothetical protein PaerPA_01001456 [Pseudomonas aeruginosa PACS2] Length = 215 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 51/232 (21%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIF +LQGE AG VF R +GC L +C +CDT + + Sbjct: 3 QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 48 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 G ++D + + + + RY +TGGEPL Q + + L++ L G+E+++ET+G Sbjct: 49 GDVVSLDAIFERVAA------YKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 102 Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNVSPENY---------IGFDF 168 ++ + + P+ DLK G E+ + + + + +N +D+ Sbjct: 103 ALDVSR------IDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDW 156 Query: 169 ERFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208 L +D E LA N RL +Q HK + Sbjct: 157 AVSKLIEYRLDQRAGEVLFSPSHHQVSARELADWIVADNLPVRLQLQLHKIL 208 >gi|156937024|ref|YP_001434820.1| radical SAM domain-containing protein [Ignicoccus hospitalis KIN4/I] gi|156566008|gb|ABU81413.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I] Length = 218 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 67/236 (28%), Positives = 98/236 (41%), Gaps = 49/236 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + + E FL++QGEG G A F R + CNL +C +CDT + + Sbjct: 1 MSEFEVIEEFLSIQGEGSLVGTPAYFVRLARCNL-----------RCPWCDTKYSW---S 46 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFE--IAV 116 G + V ++A+ E + VLTGGEPLL ++ L ++GF+ + + Sbjct: 47 PGLKVPVSEVAERALESGVG------LIVLTGGEPLLWQLEIRSFLKELEEKGFKGLVQI 100 Query: 117 ETNGTIEPPQ----GIDWICVSPKAGCDLKI-----------KGGQELKLVFPQVNV--- 158 ETNGTI P I WI VSPK CD I ELKLV + ++ Sbjct: 101 ETNGTIYPSALEGHEI-WITVSPKVTCDYYINFPSTVRRILENFSGELKLVVRRTDLTCV 159 Query: 159 -SPENYIGFDFERFSLQPMD--GPFLEENTNLAISYCFQ---NPKWRLSVQTHKFI 208 +G LQP+D + L + + R+ Q HK + Sbjct: 160 KKFLEELGDVPRPVVLQPLDEGEGYASAARELVLEVLKDDYLKRRVRVVPQVHKLL 215 >gi|322369255|ref|ZP_08043820.1| hypothetical protein ZOD2009_07199 [Haladaptatus paucihalophilus DX253] gi|320550987|gb|EFW92636.1| hypothetical protein ZOD2009_07199 [Haladaptatus paucihalophilus DX253] Length = 264 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 75/169 (44%), Gaps = 24/169 (14%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I E+F +LQGEG AG +VF R SGCNL +C FCD+ + T Sbjct: 28 LPINELFYSLQGEGTLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPTH-A 75 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R VD++ +E + + VLTGGEPL+ + V L+ L++RG+ VETNGTI Sbjct: 76 RMTVDEIVAEVES------YDANHIVLTGGEPLVHEESVTLLDRLSERGYHTTVETNGTI 129 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQ-----ELKLVFPQVNVSPENYIGF 166 ID VSPK E + + + E Sbjct: 130 FRDAPIDLASVSPKLASSTPTPETDPKGDGEWEDRHEERRIDVETLAAL 178 >gi|146304722|ref|YP_001192038.1| radical SAM domain-containing protein [Metallosphaera sedula DSM 5348] gi|145702972|gb|ABP96114.1| Radical SAM domain protein [Metallosphaera sedula DSM 5348] Length = 210 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 105/230 (45%), Gaps = 39/230 (16%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M+ Y I EIF ++QGEG G+ + F R +GCNL +C +CDT F I+ Sbjct: 1 MR-YWIVEIFTSIQGEGLVIGKPSNFVRLAGCNL-----------RCVWCDTKFSWIR-E 47 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 G ++++ + + ++ +TGGEPLLQ +PL L G+ +AVETNG Sbjct: 48 DGVPMELEEITGKL-------SRSVKWTTITGGEPLLQDILPLASTLKNLGYNVAVETNG 100 Query: 121 TIEPPQG----IDWICVSPK---AGCDLKIKGGQELKLVFPQVNVSPENYI--------- 164 TI+P Q +D VSPK +G L+ ++ + V V P + Sbjct: 101 TIKPKQELRKIVDVFSVSPKLSNSGHKLRYDFSEDWATYYKFVIVEPNRDLREVKNFVEE 160 Query: 165 -GFDFERFSLQP--MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 D E+ +QP +++ L+ + +R+ Q H+ I R Sbjct: 161 HRIDPEKVIVQPDGNRQDYIQALKELSDAVMELGLPFRVLPQLHRIISYR 210 >gi|66044666|ref|YP_234507.1| radical SAM family protein [Pseudomonas syringae pv. syringae B728a] gi|63255373|gb|AAY36469.1| Radical SAM [Pseudomonas syringae pv. syringae B728a] Length = 215 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 93/231 (40%), Gaps = 51/231 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 + L D++ + RY +TGGEPL Q + + L++ L G+E+++ET+G Sbjct: 51 ----IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIALLKRLCDAGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGG----------QELKLVFPQVNVSPENYIGFDFE 169 ++ V P+ DLK G EL QV + +D+ Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWA 157 Query: 170 RFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208 L +D E + +LA N RL +Q HK + Sbjct: 158 VSKLIQYGLDRRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208 >gi|116749416|ref|YP_846103.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116698480|gb|ABK17668.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB] Length = 215 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 88/227 (38%), Gaps = 44/227 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + EIF ++QGE G+AG VF R +GCNL +C +CDT + +G Sbjct: 3 LRVNEIFHSIQGESGYAGWPCVFVRLTGCNL-----------RCSYCDTRYAYDEG---- 47 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + L ++I + +TGGEPLLQ + P L+ L G + VETNG++ Sbjct: 48 --DFVTLREII---GRVRRFDCPLVEITGGEPLLQPETPELVAELLDLGHTVLVETNGSM 102 Query: 123 EPP-------QGIDWICVSPKAGCDLKIKGG------QELKLVF--PQVNVSPENYIGFD 167 + + +D+ C S ++ E+K V + Sbjct: 103 DISVVDRRCVKIVDFKCPSSGESDANDMENLERLGSRDEIKCVIGTREDYEFAREIERLA 162 Query: 168 FER------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 ER P+ G LA + RL +Q HK I Sbjct: 163 AERAGTGSTVCFSPVFGKLEPR--ELAEWILADRLRVRLGLQLHKII 207 >gi|307823680|ref|ZP_07653908.1| Radical SAM domain protein [Methylobacter tundripaludum SV96] gi|307734974|gb|EFO05823.1| Radical SAM domain protein [Methylobacter tundripaludum SV96] Length = 213 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 59/232 (25%), Positives = 86/232 (37%), Gaps = 50/232 (21%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M I EIF +LQGE G VF R +GC L +C +CDT + G Sbjct: 1 MSSLRITEIFHSLQGESNTVGLPTVFIRLTGCPL-----------RCVYCDTAYAFTGGE 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119 K G + +I + + Y +TGGEPL Q + L+ L +G+ +++ET+ Sbjct: 50 KIG------IDAIIAQ---AEQYGTPYITVTGGEPLAQPSCLELMTKLLDKGYVVSLETS 100 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELK----------LVFPQVNVSPENYIGFDFE 169 G ++ +D V DLK EL QV N +D+ Sbjct: 101 GALDVS-KVDQRVV---KVMDLKTPSSGELSRNCYQNIEYLTAKDQVKFVIGNDSDYDWS 156 Query: 170 RFSL-------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + L P+ G T LA R +Q HK + Sbjct: 157 KSILTEYDLPNLCEVLFSPVMGQQNP--TELAEKILKDRLPVRFQLQLHKIL 206 >gi|53804445|ref|YP_113696.1| radical activating enzyme family protein [Methylococcus capsulatus str. Bath] gi|53758206|gb|AAU92497.1| radical activating enzyme family protein [Methylococcus capsulatus str. Bath] Length = 215 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 88/227 (38%), Gaps = 42/227 (18%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 L I EIF +LQGE G VF R +GC L +C +CDT + + Sbjct: 4 TLVRITEIFFSLQGETRTVGLPTVFVRLTGCPL-----------RCSYCDTAYAF---SG 49 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNG 120 G R ++ ++ + + G RY +TGGEPL Q +PL+ AL G+++++ET G Sbjct: 50 GERMSIAEIVERV------GRYGARYVTVTGGEPLAQKACLPLLTALCDEGYQVSLETGG 103 Query: 121 TIEPPQGIDWICV-----SPKAGCDLK--------IKGGQELKLVFPQVNVSPENYIGFD 167 + + +P +G + ++ G ++K V D Sbjct: 104 AHDISAVDPRVVRVVDLKTPGSGEASRNLYANVDALRQGDQVKFVIADRPDYDWAVAKLD 163 Query: 168 FERFS------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 R + P+ G LA R +Q HK + Sbjct: 164 EHRLAERCEILFSPVAGALQPA--QLAEWILRDRLPVRFQLQLHKLL 208 >gi|85860085|ref|YP_462287.1| queuosine biosynthesis protein [Syntrophus aciditrophicus SB] gi|85723176|gb|ABC78119.1| queuosine biosynthesis protein [Syntrophus aciditrophicus SB] Length = 215 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 59/229 (25%), Positives = 93/229 (40%), Gaps = 48/229 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + EIF ++QGE G VF R +GCNL +C +CDT + +GT Sbjct: 3 LKVNEIFYSIQGESSFIGIPCVFVRLTGCNL-----------RCSYCDTRYAYEEGT--- 48 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 +++ + D I +TGGEPL+Q + P LI+ L RG + +ETNG+ Sbjct: 49 LWDIPDILDRISS------YHCPLVEITGGEPLIQKETPLLIRDLLDRGCHVLLETNGSR 102 Query: 123 EPPQGIDWICVSPKAGCDLK-----------------IKGGQELKLVFPQVN---VSPEN 162 + ID CV D+K + G E+K V + + E Sbjct: 103 PI-RTIDERCV---RIVDIKCPSSGESRSNDYRNLDDLTGQDEIKFVLGERKDYEFAKEI 158 Query: 163 YIGFDFE-RFSLQPMDGPF-LEENTNLAISYCFQ-NPKWRLSVQTHKFI 208 I + R S P+ P + + + + + R +Q HK + Sbjct: 159 LISRNLANRISHPPIFSPVTNSLDPKKLVRWILEDHLPVRFQLQLHKIL 207 >gi|330968882|gb|EGH68948.1| radical SAM family protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 215 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 93/231 (40%), Gaps = 51/231 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 + L D++ + RY +TGGEPL Q + + L++ L G+E+++ET+G Sbjct: 51 ----IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIALLRRLCDAGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGG----------QELKLVFPQVNVSPENYIGFDFE 169 ++ V P+ DLK G EL QV + +D+ Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWA 157 Query: 170 RFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208 L +D E + +LA N RL +Q HK + Sbjct: 158 VSKLIQYGLDRRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208 >gi|282900250|ref|ZP_06308202.1| hypothetical protein CRC_01639 [Cylindrospermopsis raciborskii CS-505] gi|281194865|gb|EFA69810.1| hypothetical protein CRC_01639 [Cylindrospermopsis raciborskii CS-505] Length = 208 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 59/221 (26%), Positives = 97/221 (43%), Gaps = 33/221 (14%) Query: 4 YSIKEIFLT-LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I E F + +QGEG G + F R SGC L C +CDT + G Sbjct: 8 LPIHETFQSTVQGEGYWTGSLVDFIRLSGCPL-----------SCPWCDTGYA-DGGANL 55 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 R+ + +L+ E V++GGEP + +P L++AL G ++++ET+G+ Sbjct: 56 PRFE-RTIGELLAELK------SPRIVISGGEPFIHKHLPELVEALLGAGKQVSIETSGS 108 Query: 122 IEPPQGID-WICVSPKAGCDLKIK-------GGQELKLVFP---QVNVSPENYIGFDFER 170 + WI +SPK + K E K+V ++ E Sbjct: 109 FWKEVPLSAWITLSPKEHINPKYPVQNQFWSRANEAKIVIETGQEIEFYQEQLSAHPDLC 168 Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 LQP + ++ +L + Q P ++LS+QTHK+IG++ Sbjct: 169 VYLQP-EWNSSSKSLDLILQLLQQKPDYKLSLQTHKYIGLQ 208 >gi|88705614|ref|ZP_01103324.1| radical activating enzyme [Congregibacter litoralis KT71] gi|88700127|gb|EAQ97236.1| radical activating enzyme [Congregibacter litoralis KT71] Length = 226 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 58/231 (25%), Positives = 92/231 (39%), Gaps = 51/231 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF +LQGE G VF R +GC L +C +CDT++ G Sbjct: 15 TLRITEIFYSLQGEARTVGLPTVFVRLTGCPL-----------RCLYCDTEYAFH---GG 60 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 +++ +AD + Y +TGGEPL Q + +PL+ L +G+E+++ET+G Sbjct: 61 EIMSLEHIADQVAAHKPA------YVTVTGGEPLAQPNCLPLLSRLCDQGYEVSLETSGA 114 Query: 122 IEPPQGIDWICVSPKA--GCDLKIKGGQELKLV----------FPQVNVSPENYIGFDFE 169 + V P+ DLK E+ QV + +++ Sbjct: 115 MSVAG------VDPRVVKVLDLKTPASGEVARNDYGNVQYLTPNDQVKFVICDRGDYEWA 168 Query: 170 RFSLQP-------MDGPFLEENTNLA----ISYCF-QNPKWRLSVQTHKFI 208 RF L D F + LA + + RL +Q HK++ Sbjct: 169 RFKLDEYTLGDRVSDVLFSPSHEQLAPRELAEWILGDGLQVRLQLQLHKYL 219 >gi|302187148|ref|ZP_07263821.1| radical SAM family protein [Pseudomonas syringae pv. syringae 642] Length = 215 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 94/231 (40%), Gaps = 51/231 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 + L D++ + RY +TGGEPL Q + +P +++L G+E+++ET+G Sbjct: 51 ----IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIPFLKSLCDAGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGG----------QELKLVFPQVNVSPENYIGFDFE 169 ++ V P+ DLK G EL QV + +D+ Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWA 157 Query: 170 RFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208 L +D E + +LA N RL +Q HK + Sbjct: 158 VSKLIQYGLDRRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208 >gi|167035186|ref|YP_001670417.1| radical SAM domain-containing protein [Pseudomonas putida GB-1] gi|166861674|gb|ABZ00082.1| Radical SAM domain protein [Pseudomonas putida GB-1] Length = 215 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 94/231 (40%), Gaps = 51/231 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I E+F +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGTLR 52 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 +D + + + + RY +TGGEPL Q + +PL+Q L G+E+++ET+G Sbjct: 53 ---TLDSILEQV------AGFKPRYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQE-----------------LKLVFPQVNVSPENYI 164 ++ + DLK G +E +K V + ++ Sbjct: 104 LDITGTDTRVS----RVVDLKTPGSEESHRNRYENIEQLTRNDQVKFVIC--SREDYDWA 157 Query: 165 GFDFERFSLQPMDGPFL-------EENTNLAISYCFQNPKWRLSVQTHKFI 208 +++L G L + ++LA N R +Q HK + Sbjct: 158 VSKLIQYNLSERAGEVLFSPSHHQVKASDLADWIVADNLPVRFQLQLHKLL 208 >gi|255020132|ref|ZP_05292202.1| Queuosine Biosynthesis QueE Radical SAM [Acidithiobacillus caldus ATCC 51756] gi|254970425|gb|EET27917.1| Queuosine Biosynthesis QueE Radical SAM [Acidithiobacillus caldus ATCC 51756] Length = 213 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 88/236 (37%), Gaps = 58/236 (24%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + EIF +LQGE +G A F R +GC L +C +CDT + Sbjct: 1 MSRLRVSEIFHSLQGETTASGVPATFVRLTGCPL-----------RCSYCDTAYAFH--- 46 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119 G + DQ+ + E ++ R V+TGGEPL Q V L+ AL G E+ +ET+ Sbjct: 47 GGEWLDADQILARVAE------RDNRLVVITGGEPLAQPAVHALMTALCDGGREVYLETS 100 Query: 120 GTIEPPQGIDWICVSPKA--GCDLKIKGGQEL-----------------KLVFPQVNVSP 160 G + + V P+ DLK G EL K V + Sbjct: 101 GALSVAE------VDPRVVKILDLKSPGSGELERNLWENLDYLGSRDQVKFVLCNRD--D 152 Query: 161 ENYIGFDFERFSLQ--------PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + LQ P G + LA RL +Q HKFI Sbjct: 153 YEWARTTVRERKLQGRCELLFSPAYGQLTARD--LAEWILEDRLPVRLQIQLHKFI 206 >gi|291612993|ref|YP_003523150.1| radical SAM domain protein [Sideroxydans lithotrophicus ES-1] gi|291583105|gb|ADE10763.1| Radical SAM domain protein [Sideroxydans lithotrophicus ES-1] Length = 218 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 59/231 (25%), Positives = 88/231 (38%), Gaps = 50/231 (21%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIF +LQGE G VF R +GC L +C +CDT + G Sbjct: 7 ESLRISEIFYSLQGETSRVGLPTVFVRLTGCPL-----------RCSYCDTAYAFTGGQS 55 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 QL+ +++E RY +TGGEPL Q + + L++AL G+E+++ET G Sbjct: 56 ------MQLSAIMDE---VASYAPRYVTVTGGEPLAQKNCLFLLRALCDAGYEVSLETGG 106 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGG-----------------QELKLV------FPQVN 157 ++ G+D + D+K G E+K V + Sbjct: 107 ALDVS-GVDARVM---KVLDIKTPGSGEVQKNLWGNLQHLGRHDEIKFVLCGEADYQWAK 162 Query: 158 VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + + P G T LA RL VQ HK + Sbjct: 163 QVMQEHALAQRCAVLFSPAQGQLAP--TELAEWILRDRLPVRLQVQLHKLL 211 >gi|213615976|ref|ZP_03371802.1| hypothetical protein SentesTyp_16494 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 178 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 69/167 (41%), Gaps = 21/167 (12%) Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + K G + + L +I Q R+ V+TGGEP + +PL L K GF +E Sbjct: 18 ESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIE 73 Query: 118 TNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------VFPQVNVSPENY 163 T+GT E W+ VSPK ++ E+K ++ Sbjct: 74 TSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATL 133 Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 134 SDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 177 >gi|330896138|gb|EGH28359.1| radical SAM family protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 215 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 58/231 (25%), Positives = 95/231 (41%), Gaps = 51/231 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF +LQGE AG VF R +GC +C++CD+ + GT Sbjct: 4 TLRITEIFHSLQGETRTAGLPTVFVRLTGCPF-----------RCQYCDSAYAFSGGT-- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 + L D++ + RY +TGGEPL Q + + L++ L G+E+++ET+G Sbjct: 51 ----IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIALLKRLCDAGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL-----------------KLVF---PQVNVS 159 ++ V P+ DLK G +E+ K V + + Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWA 157 Query: 160 PENYIGFDFERFSLQPMDGPFLEE--NTNLAISYCFQNPKWRLSVQTHKFI 208 I + +R + + + +E +LA N RL +Q HK + Sbjct: 158 VSKLIQYGLDRRAGEVLFSASHQELKGRDLADWIVADNLPVRLQMQLHKIL 208 >gi|170723151|ref|YP_001750839.1| radical SAM domain-containing protein [Pseudomonas putida W619] gi|169761154|gb|ACA74470.1| Radical SAM domain protein [Pseudomonas putida W619] Length = 215 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 47/229 (20%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I E+F +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 V L ++E+ + RY +TGGEPL Q + +PL+Q L G+E+++ET+G Sbjct: 51 ----VRSLDSIMEQ---VAGFKPRYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQE-----------------LKLVF---PQVNVSPE 161 ++ I VS DLK G +E +K V + + Sbjct: 104 LDISA--TDIRVS--RVVDLKTPGSEESHRNLYENIEHLTRNDQVKFVICSREDYDWAVS 159 Query: 162 NYIGFDFERFSLQPMDGP--FLEENTNLAISYCFQNPKWRLSVQTHKFI 208 I ++ + + + P + ++LA N R +Q HK + Sbjct: 160 KLIQYNLAERAGEVLFSPSHHQVKASDLADWIVADNLPVRFQLQLHKLL 208 >gi|257386657|ref|YP_003176430.1| radical SAM protein [Halomicrobium mukohataei DSM 12286] gi|257168964|gb|ACV46723.1| Radical SAM domain protein [Halomicrobium mukohataei DSM 12286] Length = 258 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 19/145 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I E+F +LQGEG AG +VF R SGCNL +C FCD+ + + Sbjct: 22 LPINELFHSLQGEGKLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPSH-A 69 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +D++ IE + + V+TGGEPL+ + V L++ L++RG+ VETNGT+ Sbjct: 70 WLTIDEIVAEIE------GYDADHVVVTGGEPLIHEETVDLLERLDERGYHTTVETNGTV 123 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQ 147 ID VSPK Sbjct: 124 AVDAPIDLASVSPKLASSTPTPERD 148 >gi|325274586|ref|ZP_08140642.1| radical SAM domain-containing protein [Pseudomonas sp. TJI-51] gi|324100228|gb|EGB98018.1| radical SAM domain-containing protein [Pseudomonas sp. TJI-51] Length = 215 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 47/229 (20%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I E+F +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGTVR 52 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 +D + + + RY +TGGEPL Q + +PL+Q L G+E+++ET+G Sbjct: 53 ---TLDSILEQV------AGFRPRYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVN-VSPENYIGF-----DFERFSLQ 174 ++ + DLK G +E + ++ ++ ++ + + F + +++ Sbjct: 104 LDIAGTDTRVS----RVVDLKTPGSEESHRNLYSNIDQLTRNDQVKFVICSREDYDWAVS 159 Query: 175 PMDGPFLEE---------------NTNLAISYCFQNPKWRLSVQTHKFI 208 + L E ++LA N R +Q HK + Sbjct: 160 KLIQYNLAERAGEVLFSPSHHQVSASDLADWIVADNLPVRFQLQLHKLL 208 >gi|269467818|gb|EEZ79570.1| organic radical activating enzyme [uncultured SUP05 cluster bacterium] Length = 211 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 94/225 (41%), Gaps = 38/225 (16%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M +I EIF +LQGE G VF R +GC L +C +CDT++ Sbjct: 1 MVNLNINEIFYSLQGEAREVGLPTVFVRLTGCPL-----------RCTYCDTEYAFKGN- 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 N ++ ++ E + + +Y +TGGEPL Q++ L+ AL K G+++++ET+ Sbjct: 49 -----NTLSISKILTE---VKKYKTQYVCITGGEPLAQINCHVLLDALVKEGYQVSLETS 100 Query: 120 GTIEPPQ-------GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 G+I+ +D S K +LK V Q+ + FD+ Sbjct: 101 GSIDVSAVNSGVSIVMDVKTPSSNESKHNKYDNIDKLK-VKDQLKFVIGSKEDFDWSVDV 159 Query: 173 L-------QPMDGPFLEENTNLAI-SYCFQN-PKWRLSVQTHKFI 208 L Q + P E + + + R+ VQ HK + Sbjct: 160 LGRYPTMAQVLFSPVFEAIKPAQLADWILEKQLNVRMQVQLHKLL 204 >gi|220935394|ref|YP_002514293.1| putative radical activating enzyme [Thioalkalivibrio sp. HL-EbGR7] gi|219996704|gb|ACL73306.1| putative radical activating enzyme [Thioalkalivibrio sp. HL-EbGR7] Length = 227 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 83/231 (35%), Gaps = 54/231 (23%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIFL+LQGE G VF R +GC L +C +CDT++ T G Sbjct: 18 LRITEIFLSLQGESRSVGWPTVFVRLTGCPL-----------RCGYCDTEYAF---TGGE 63 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTI 122 +++ + + + + +TGGEPL Q + L+ L G+E+++ET+G + Sbjct: 64 WMSLEAVLAQVASHGV------HHVTVTGGEPLAQRACLELLTRLCDAGYEVSLETSGAL 117 Query: 123 EPPQGIDWICVSPKA--GCDLKIKGGQE-----------------LKLV------FPQVN 157 D V P+ DLK E +K V + Sbjct: 118 ------DVAAVDPRVVKVMDLKTPASGEAGRNRYENLGYLSLKDQVKFVICDRADYEWAR 171 Query: 158 VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + + P G + LA R +Q HK + Sbjct: 172 QTVATHDLTARCEVLFSPSYGQLAPRD--LADWIVADRLPVRFQLQLHKIL 220 >gi|254167785|ref|ZP_04874635.1| radical SAM domain protein [Aciduliprofundum boonei T469] gi|289597123|ref|YP_003483819.1| Radical SAM domain protein [Aciduliprofundum boonei T469] gi|197623313|gb|EDY35878.1| radical SAM domain protein [Aciduliprofundum boonei T469] gi|289534910|gb|ADD09257.1| Radical SAM domain protein [Aciduliprofundum boonei T469] Length = 209 Score = 157 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 96/223 (43%), Gaps = 41/223 (18%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + E+F ++QGEG + G F R +GCNL +C +CDT++ + G Sbjct: 2 KVNEMFTSIQGEGIYIGVPMFFVRLTGCNL-----------RCEWCDTEYAFYE---GEE 47 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 ++D + +EE + ++ +TGGEPLLQ +V LI L ++ ++I VETNG+I Sbjct: 48 MSIDSIIKKVEESGM------KWVCITGGEPLLQEEVYKLIDILLRKDYKILVETNGSIL 101 Query: 124 PPQ---------GIDWICVSPKAGCDLKIKGGQEL------KLVFPQVNVSPENYIGFDF 168 + +D S K ++ + L K V ++ + Y Sbjct: 102 IDKLPTEENLVISLDIKTPSSKMERAMRFENLNYLGPKDFVKFVI--MDENDFEYAKKII 159 Query: 169 ERFSLQP--MDGPFLEENTN-LAISYCFQNPKWRLSVQTHKFI 208 E++ + + P N LA + R+ Q HK I Sbjct: 160 EKYEIDKEIIFQPVGSTNLKWLAEKVVEEKLNVRVLPQLHKII 202 >gi|222475965|ref|YP_002564486.1| Radical SAM domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222454336|gb|ACM58600.1| Radical SAM domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 258 Score = 157 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 26/194 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I E+F +LQGEG AG +VF R SGCNL +C FCD+ + T G Sbjct: 21 LPINEVFYSLQGEGTLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPT-GA 68 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +VD + + + ++ + VLTGGEPL+ + + L++ L G+ VETNGTI Sbjct: 69 WRDVDSIIEEVHSH-----EQANHVVLTGGEPLIHEESIELLERLAADGYHTTVETNGTI 123 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQ-------ELKLVFPQVNVSPENYIGFDFE-RFSLQ 174 ID +SPK E K ++++ + + D+E + Sbjct: 124 YRDAPIDLASISPKLASSTPTPDRDPKGEGEWEEKHEQNRIDMDALSQMVDDYETQLKFV 183 Query: 175 PMDGPFLEENTNLA 188 D L + T+L Sbjct: 184 VTDASDLPQITDLV 197 >gi|312623403|ref|YP_004025016.1| Radical SAM domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] gi|312203870|gb|ADQ47197.1| Radical SAM domain protein [Caldicellulosiruptor kronotskyensis 2002] Length = 225 Score = 157 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 45/227 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 +++ E F++++GEG +G AVF RF+GCNL +C +CDT + + + Sbjct: 14 FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------RCSWCDTKYAN-ENPEYE 61 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 ++D L + I I + LTGGEPL+Q + LI L GFE+ +ETNG++ Sbjct: 62 EIDIDNLMNFITSTGI------KRVTLTGGEPLIQPYIYLLIDRLISEGFEVNIETNGSV 115 Query: 123 -------EPPQGIDWICVSPKAGCDLKIK--------GGQELKLVFP--QVNVSPENYIG 165 + +D+ C P +G + ++ +K V + + E I Sbjct: 116 SIKHVPRDAIITMDYKC--PSSGMEHRMIVNNIHLLGEKDVIKFVVATYEDLKTAERIIK 173 Query: 166 FDFER--FSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 R P+ G + + +N + R+ +Q HK I Sbjct: 174 TFKPRCNIYFSPVFGKIEPR---EIVKFVLENGLFEARVQLQLHKII 217 >gi|257452357|ref|ZP_05617656.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R] gi|257465851|ref|ZP_05630162.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans ATCC 25563] gi|315917008|ref|ZP_07913248.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans ATCC 25563] gi|317058900|ref|ZP_07923385.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R] gi|313684576|gb|EFS21411.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R] gi|313690883|gb|EFS27718.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans ATCC 25563] Length = 222 Score = 157 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 95/235 (40%), Gaps = 48/235 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y + EIF ++ GEG AG++A+F RF CNL C +CDT + + + Sbjct: 1 MPKYKVVEIFESINGEGKKAGQLALFIRFQYCNL-----------NCSYCDTKWANSKNS 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVET 118 +++++ L +E K + LTGGEPLLQ D+ L++A ++ FEI +ET Sbjct: 50 PFTWMSLEEILSLAKE------KRIKNITLTGGEPLLQTDIRSLLEAFSKEKQFEIEIET 103 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIK-----------------GGQELKLVF------PQ 155 NG++ + I SP D K+ +K V + Sbjct: 104 NGSVPLETFRN-IENSPSFTIDYKLPESHMEEYMSLENFSSVHRNDTVKFVVSNRKDLEK 162 Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 E Y P+ G + + ++ + +Q HKFI Sbjct: 163 AKEIIEQYSLIGKCAVYFSPVFGKI---ALPSIVDFMKEHHLNGVNMQLQMHKFI 214 >gi|238754504|ref|ZP_04615859.1| hypothetical protein yruck0001_24400 [Yersinia ruckeri ATCC 29473] gi|238707333|gb|EEP99695.1| hypothetical protein yruck0001_24400 [Yersinia ruckeri ATCC 29473] Length = 170 Score = 157 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 69/167 (41%), Gaps = 21/167 (12%) Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + G + QL + +Q R+ V+TGGEP + PL L + GF +E Sbjct: 10 ESDAWGNASEQQLLAIFRQQG----YTARHVVITGGEPCIYDLSPLTTLLEQEGFSCQIE 65 Query: 118 TNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL------VFPQVNVSPENY 163 T+GT E W+ VSPK D + E+K +++ E Sbjct: 66 TSGTHEVHCSATTWVTVSPKVNMRGGLTVLDQALIRADEIKHPVGRIRDIEALDILLERL 125 Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ EE T L I C WRLS+QTHK++ I Sbjct: 126 HDDKARIIALQPISQK--EEATRLCIETCIAR-NWRLSMQTHKYLNI 169 >gi|16120216|ref|NP_395804.1| hypothetical protein VNG6305C [Halobacterium sp. NRC-1] gi|169237476|ref|YP_001690680.1| hypothetical protein OE5197R [Halobacterium salinarum R1] gi|10584342|gb|AAG20939.1| Vng6305c [Halobacterium sp. NRC-1] gi|167728703|emb|CAP15547.1| hypothetical protein OE5197R [Halobacterium salinarum R1] Length = 257 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 67/138 (48%), Gaps = 18/138 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I E+F +LQGEG AG +VF R SGCNL +C FCD+ + T Sbjct: 20 LPINELFYSLQGEGKLAGTPSVFVRTSGCNL-----------RCWFCDSYHTSWEPT--- 65 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 + + D+I E + + + VLTGGEPLL D V L+ L G+ VETNGTI Sbjct: 66 -HATMSVDDIIAE--VQSYEHADHVVLTGGEPLLHDDAVVLLDRLAALGYHTTVETNGTI 122 Query: 123 EPPQGIDWICVSPKAGCD 140 ID VSPK Sbjct: 123 HRDAPIDLASVSPKLASS 140 >gi|26987960|ref|NP_743385.1| radical SAM domain protein [Pseudomonas putida KT2440] gi|148546497|ref|YP_001266599.1| radical SAM domain-containing protein [Pseudomonas putida F1] gi|24982673|gb|AAN66849.1|AE016313_8 radical activating enzyme [Pseudomonas putida KT2440] gi|5514780|emb|CAB50782.1| hypothetical protein [Pseudomonas putida] gi|148510555|gb|ABQ77415.1| Radical SAM domain protein [Pseudomonas putida F1] gi|313497577|gb|ADR58943.1| Radical SAM domain protein [Pseudomonas putida BIRD-1] Length = 215 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 55/229 (24%), Positives = 94/229 (41%), Gaps = 47/229 (20%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I E+F +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGTVR 52 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 +D + + + + RY +TGGEPL Q + +PL+Q L G+E+++ET+G Sbjct: 53 ---TLDSILEQV------AGFKPRYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQE-----------------LKLVF---PQVNVSPE 161 ++ + DLK G +E +K V + + Sbjct: 104 LDIAGTDTRVS----RVVDLKTPGSEESHRNRYENIEQLTRNDQVKFVICSREDYDWAVS 159 Query: 162 NYIGFDFERFSLQPMDGPFLEE--NTNLAISYCFQNPKWRLSVQTHKFI 208 I ++ + + + P + ++LA N R +Q HK + Sbjct: 160 KLIQYNLAERAGEVLFSPSHHQVNASDLADWIVADNLPVRFQLQLHKLL 208 >gi|190575559|ref|YP_001973404.1| putative radical SAM-superfamily protein [Stenotrophomonas maltophilia K279a] gi|190013481|emb|CAQ47116.1| putative radical SAM-superfamily protein [Stenotrophomonas maltophilia K279a] Length = 233 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 55/234 (23%), Positives = 86/234 (36%), Gaps = 54/234 (23%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + I EIF +LQGE AG VF R +GC L +C++CDT + GT Sbjct: 21 LPRLKITEIFTSLQGEADTAGWPTVFVRLTGCPL-----------RCQYCDTAYAFHGGT 69 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 +++D + + Q + R+ +TGGEPL Q + L+Q L G ++++ET+ Sbjct: 70 ---WWDIDDIVAEVLAQGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGMDVSLETS 120 Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLV------FP 154 G ++ V P+ D+K G E +K V + Sbjct: 121 GALDVSA------VDPRVSRVVDIKTPGSAEAARNRWENLPLLTARDQIKFVICSRGDYD 174 Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + P G LA R +Q HK + Sbjct: 175 WAKALVAEHELVKRCTVFFSPSKGEITAR--QLADWIVEDRLPVRFQMQLHKIL 226 >gi|312128624|ref|YP_003993498.1| Radical SAM domain-containing protein [Caldicellulosiruptor hydrothermalis 108] gi|311778643|gb|ADQ08129.1| Radical SAM domain protein [Caldicellulosiruptor hydrothermalis 108] Length = 225 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 95/225 (42%), Gaps = 41/225 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 +++ E F++++GEG +G AVF RF+GCNL +C +CDT + + + Sbjct: 14 FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------RCSWCDTKYAN-ENPEYE 61 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 ++D L + I I + LTGGEPL+Q + LI L GFE+ +ETNG++ Sbjct: 62 EIDIDNLMNFITSTGI------KRVTLTGGEPLIQPYIYLLIDRLISEGFEVNIETNGSV 115 Query: 123 -------EPPQGIDWICVSPKAGCDLKIKGG------QELKLVFP--QVNVSPENYIGFD 167 + +D+ C S + + LK V + + E I Sbjct: 116 SIKHVPRDAIITMDYKCPSSGMEDRMIVDNIHFLGQKDVLKFVVSTYEDLKTAERIIKTF 175 Query: 168 FER--FSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 R P+ G + + +N R+ +Q HK I Sbjct: 176 KPRCNIFFSPVFGKIEPR---EIVKFVLENGLFDARVQLQLHKII 217 >gi|284048974|ref|YP_003399313.1| Radical SAM domain protein [Acidaminococcus fermentans DSM 20731] gi|283953195|gb|ADB47998.1| Radical SAM domain protein [Acidaminococcus fermentans DSM 20731] Length = 218 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 100/230 (43%), Gaps = 42/230 (18%) Query: 1 MKL--YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58 MK + + E+F +++GEG G +AVF RF+GCNL +C +CDT + Sbjct: 1 MKTETFPVVELFDSIEGEGKRTGAMAVFVRFAGCNL-----------RCSYCDTGYALEP 49 Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 + L I + LTGGEPLLQ L + L++ G+E+ +ET Sbjct: 50 ADAREHLTEEDLMGRIRR------YPWKKVTLTGGEPLLQPLDSLCRTLSREGYEVNIET 103 Query: 119 NGTIEP----PQGIDWI--CVSPKAGCDLKIK--------GGQELKLVF-PQVNVSPENY 163 NG + P+G+ + SP +G +++ G +K V + ++ + Sbjct: 104 NGAVPLLEERPRGLFYTMDVKSPSSGMRGRMRMENLTRLTGEDVVKFVVGSREDLEDMDR 163 Query: 164 IGFDF---ERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 + ++ + + P+ G + + ++ + R+ VQ HK I Sbjct: 164 VLREYTLRSQVYVSPVYGAIEPR---ELVEFVREHKLAQVRVQVQLHKII 210 >gi|254523566|ref|ZP_05135621.1| radical activating enzyme [Stenotrophomonas sp. SKA14] gi|219721157|gb|EED39682.1| radical activating enzyme [Stenotrophomonas sp. SKA14] Length = 233 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 55/234 (23%), Positives = 86/234 (36%), Gaps = 54/234 (23%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + I EIF +LQGE AG VF R +GC L +C++CDT + GT Sbjct: 21 LPRLKITEIFTSLQGEADTAGWPTVFVRLTGCPL-----------RCQYCDTAYAFHGGT 69 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 +++D + + Q + R+ +TGGEPL Q + L+Q L G ++++ET+ Sbjct: 70 ---WWDIDDIVAEVLAQGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGMDVSLETS 120 Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIKGGQEL-----------------KLV------FP 154 G ++ V P+ D+K G E+ K V + Sbjct: 121 GALDVSA------VDPRVSRVVDIKTPGSAEVARNRWENLPLLTARDQIKFVICSREDYD 174 Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + P G LA R +Q HK + Sbjct: 175 WAKALLAEHELVKRCTVFFSPSKGEITAR--QLADWIVEDRLPVRFQMQLHKIL 226 >gi|91200480|emb|CAJ73528.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 211 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 58/226 (25%), Positives = 93/226 (41%), Gaps = 48/226 (21%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF ++QGE G VF R +GCNL +C +CDT + + G Sbjct: 3 INEIFRSIQGETSFTGLPFVFVRLTGCNL-----------RCSYCDTQYAYDE---GNEM 48 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124 + + D I+ + + +TGGEPL + P L++ L R + + VETNG+ + Sbjct: 49 PISSIIDKIDSFGL------KSVCVTGGEPLSNHNTPVLVRELLNRNYTVLVETNGSYDV 102 Query: 125 ---PQG----IDWICVSPKAGCDLKI--------KGGQELKLV------FPQVNVSPENY 163 P+G +D C P +G K+ E+K V + Y Sbjct: 103 SVLPEGTIRILDVKC--PDSGMSHKMCWHNISHLTKKDEVKFVLSSRNDYEWARSMISKY 160 Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFI 208 + + P+ G +L S+ + + RL +Q HK+I Sbjct: 161 HLTEIAHILMNPVYGMIQP---SLIASWILEDHINVRLQLQMHKYI 203 >gi|71909659|ref|YP_287246.1| radical SAM family protein [Dechloromonas aromatica RCB] gi|71849280|gb|AAZ48776.1| Radical SAM [Dechloromonas aromatica RCB] Length = 212 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 87/233 (37%), Gaps = 58/233 (24%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE G VF R +GC L +C +CDT + T G Sbjct: 3 LRITEIFYSLQGEASRVGLPTVFVRLTGCPL-----------RCSWCDTTYSF---TGGE 48 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 V+ + + + R +TGGEPL Q D +PL+ AL G+++++ET+G + Sbjct: 49 AATVESVLAEV------AKYPARQVCVTGGEPLSQKDCLPLLAALCNAGYDVSLETSGAL 102 Query: 123 EPPQGIDWICVSPKAG--CDLKIKGG-----------------QELKLVFP-------QV 156 + V P+ DLK E+K+V Sbjct: 103 DVSA------VDPRVARIMDLKAPDSAESARNLWENLTVLTPRDEIKIVIASRGDYEWAR 156 Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN-PKWRLSVQTHKFI 208 +V + + P G ++ + ++ R +Q HK + Sbjct: 157 DVLRQKKLDQICSVLF-SPAQGVIEPQSLA---EWILEDGLNVRFQLQLHKLL 205 >gi|254482513|ref|ZP_05095752.1| radical SAM domain protein, putative [marine gamma proteobacterium HTCC2148] gi|214037204|gb|EEB77872.1| radical SAM domain protein, putative [marine gamma proteobacterium HTCC2148] Length = 222 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 57/228 (25%), Positives = 90/228 (39%), Gaps = 47/228 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE G VF R +GC L +C +CDT++ + G Sbjct: 12 LRITEIFYSLQGEARTVGVPTVFVRLTGCPL-----------RCVYCDTEYAF---SGGD 57 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +++D + + + R+ +TGGEPL Q + + L+ L G+E+++ET+G + Sbjct: 58 LFSIDDVVSRVAA------YQPRFVTVTGGEPLAQPNCLLLLTRLCDAGYEVSLETSGAM 111 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQE----------LKLVFPQVNVSPENYIGFDFERFS 172 +D V DLK E L L QV + +++ RF Sbjct: 112 TV-AEVDSRVV---KVIDLKTPASAEMGRNDYDNIPLLLPDDQVKFVICDRDDYEWARFK 167 Query: 173 LQPMDGPFLEENT------------NLAISYCFQNPKWRLSVQTHKFI 208 L P + LA N R+ +Q HK + Sbjct: 168 LDEYQLPARVSDVLFSPSHGQLSGRELAEWVLEDNLPVRMQLQLHKIL 215 >gi|192361070|ref|YP_001983293.1| radical SAM domain-containing protein [Cellvibrio japonicus Ueda107] gi|190687235|gb|ACE84913.1| radical SAM domain protein [Cellvibrio japonicus Ueda107] Length = 252 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 57/232 (24%), Positives = 90/232 (38%), Gaps = 55/232 (23%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE G VF R +GC L +C +CD+++ G Sbjct: 42 LKITEIFYSLQGEARTVGLPTVFVRLTGCPL-----------RCGYCDSEYAFY---GGE 87 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R ++D++ + R+ +TGGEP+ Q + V L++ L G+ +++ET+G + Sbjct: 88 RLSLDEILARVAR------YHPRHVCVTGGEPMAQRECVTLLKMLCDAGYGVSLETSGAM 141 Query: 123 EPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVF---------PQVNVSPENYIGFDFER 170 V P+ DLK G E+ + + QV N +++ R Sbjct: 142 PLED------VDPRVSKVMDLKTPGSGEVGRNRWENIPLLGEQDQVKFVICNREDYEWAR 195 Query: 171 FSL--------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 F L P G LA N R +Q HK + Sbjct: 196 FKLDEYELASRAGEVLFSPSHGQVKP--VELAEWILADNLPVRFQLQLHKLL 245 >gi|194366888|ref|YP_002029498.1| Radical SAM domain-containing protein [Stenotrophomonas maltophilia R551-3] gi|194349692|gb|ACF52815.1| Radical SAM domain protein [Stenotrophomonas maltophilia R551-3] Length = 233 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 55/234 (23%), Positives = 86/234 (36%), Gaps = 54/234 (23%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + I EIF +LQGE AG VF R +GC L +C++CDT + GT Sbjct: 21 LPRLKITEIFTSLQGEADTAGWPTVFVRLTGCPL-----------RCQYCDTAYAFHGGT 69 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 +++D + + Q + R+ +TGGEPL Q + L+Q L G ++++ET+ Sbjct: 70 ---WWDIDDIVAEVLAQGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGMDVSLETS 120 Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLV------FP 154 G ++ V P+ D+K G E +K V + Sbjct: 121 GALDVSA------VDPRVSRVVDIKTPGSAEAARNRLENLPLLTARDQIKFVICSREDYD 174 Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + P G LA R +Q HK + Sbjct: 175 WAKAMLAEHDLVKRCTVFFSPSKGEITAR--QLADWIVEDRLPVRFQMQLHKIL 226 >gi|300712358|ref|YP_003738172.1| Radical SAM domain protein [Halalkalicoccus jeotgali B3] gi|299126041|gb|ADJ16380.1| Radical SAM domain protein [Halalkalicoccus jeotgali B3] Length = 251 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 50/145 (34%), Positives = 67/145 (46%), Gaps = 19/145 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I E+F +LQGEG AG + F R SGCNL +C FCD+ + G Sbjct: 17 LPINELFHSLQGEGKLAGVPSTFVRTSGCNL-----------RCWFCDSYHTSWE-PAGD 64 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 ++ + + IE+ + VLTGGEPLL L++ L +RG+ VETNGTI Sbjct: 65 WMGMEAILEGIEDHG------ADHVVLTGGEPLLHDASSELLERLAERGYHTTVETNGTI 118 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQ 147 P +D VSPK Sbjct: 119 VPDAPVDLASVSPKLASSTPTPEKD 143 >gi|254167036|ref|ZP_04873889.1| radical SAM domain protein, putative [Aciduliprofundum boonei T469] gi|197623892|gb|EDY36454.1| radical SAM domain protein, putative [Aciduliprofundum boonei T469] Length = 209 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 43/224 (19%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF ++QGEG + G F R +GCNL +C +CDT++ + G Sbjct: 2 KVNEIFTSIQGEGIYIGVSMFFVRLTGCNL-----------RCEWCDTEYAFYE---GEE 47 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 ++D + +EE + ++ +TGGEPLLQ +V LI L ++ ++I +ETNG+I Sbjct: 48 MSIDSIIKKVEESGM------KWVCITGGEPLLQEEVYKLIDILLRKDYKILLETNGSIL 101 Query: 124 PPQ---------GIDWICVSPKAGCDLKIKGGQEL------KLVFPQVN---VSPENYIG 165 + +D S K ++ + L K V N + + Sbjct: 102 IDKLPTEENLVISLDIKTPSSKMERAMRFENLNYLGPKDFVKFVIMDENDFEYAKKIIEK 161 Query: 166 FDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 ++ ++ QP+ G L+ LA + R+ Q HK I Sbjct: 162 YEIDKEIIFQPVGGTNLKW---LAEKVVEEKLNVRVLPQLHKII 202 >gi|254448671|ref|ZP_05062129.1| radical activating enzyme [gamma proteobacterium HTCC5015] gi|198261679|gb|EDY85966.1| radical activating enzyme [gamma proteobacterium HTCC5015] Length = 235 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 82/226 (36%), Gaps = 44/226 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE AG F R +GC L +C +CD+++ G Sbjct: 26 LKITEIFCSLQGESTLAGLPTTFVRLTGCPL-----------RCTYCDSEYAFF---GGD 71 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 ++ + L D ++ +TGGEPL Q L+ AL RG+ +++ET+G + Sbjct: 72 WWSQEALLDRVDTLG------APNVCVTGGEPLAQRSCHELMSALCDRGYRVSLETSGAL 125 Query: 123 EPPQ-------GIDWICVSPKAGCDLK------IKGGQELKLVFPQV-------NVSPEN 162 + +D + K +K G ++K V E Sbjct: 126 DISTVDQRVMVVMDIKTPDSREDHRNKFDNLSQLKAGDQVKFVIGSRADYDWAKQRVAER 185 Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 I E P +LA R +QTHK + Sbjct: 186 EIDQRCEVLF-SPNYEKLSAR--SLADWIVEDRLPVRFQMQTHKLL 228 >gi|268609642|ref|ZP_06143369.1| MoaA family Fe-S oxidoreductase [Ruminococcus flavefaciens FD-1] Length = 225 Score = 155 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 62/233 (26%), Positives = 92/233 (39%), Gaps = 41/233 (17%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + + E F+++ GEG AG +A+F RF+GCNL +C +CDT + + Sbjct: 1 MGTFRLAEHFVSINGEGRLAGELALFLRFTGCNL-----------RCDWCDTMWANEKDA 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 N LA + ++ + E R LTGGEPLLQ D+P L + G I +ETN Sbjct: 50 PYTLMNTSSLAKIAQQAY--EEYGVRNVTLTGGEPLLQEDLPELCGRIAGLGLNIEIETN 107 Query: 120 GTIEPPQGI-DWICVSPKAGCDLKIKGG-----------------QELKLV---FPQVNV 158 G + + D P D K+ LK V +N Sbjct: 108 GAVPLEPFLSDKRTGRPVITMDYKLPSSKMEKHMCTDNFRYLKYFDTLKFVCGSLADLNR 167 Query: 159 SPENYIGFDFER-FSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208 + E + E L P+ G + + + RL +Q HK I Sbjct: 168 AAEIIEEYKPECMIYLSPVFGRIEP---AEMVEFMKERKLGNVRLQLQLHKMI 217 >gi|313202056|ref|YP_004040714.1| radical sam domain-containing protein [Methylovorus sp. MP688] gi|312441372|gb|ADQ85478.1| Radical SAM domain protein [Methylovorus sp. MP688] Length = 212 Score = 155 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 62/232 (26%), Positives = 92/232 (39%), Gaps = 51/232 (21%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MKL I EIF +LQGE G VF R +GC + +C +CDT + Sbjct: 1 MKL-RIHEIFHSLQGESSRVGLPTVFVRLTGCPM-----------RCVYCDTAYAFH--- 45 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 GG +D + + E Y +TGGEPL Q D L+ L G+ +++ET Sbjct: 46 GGGSMEIDDIMQKVAE------YGAHYVTVTGGEPLAQRDCHVLLTRLCDAGYSVSLETG 99 Query: 120 GTIEPPQGIDWICVSPKAGC--DLKIKGGQEL-KLVFPQ-VNVSPENYIGF--------- 166 G +D V P+ D+K G EL K ++ ++ ++ + F Sbjct: 100 GA------MDIANVDPRVSVILDIKTPGSGELEKNLWGNLAHLKAQDEVKFVLCDHADYL 153 Query: 167 -DFERFSLQPM--------DGPFLEEN-TNLAISYCFQNPKWRLSVQTHKFI 208 E QP+ + + N T LA R+ VQ HK + Sbjct: 154 WAKELLDKQPLHRTCSVLFSPVYSQVNPTELAEWILADKLPVRMQVQLHKIL 205 >gi|253997441|ref|YP_003049505.1| Radical SAM domain-containing protein [Methylotenera mobilis JLW8] gi|253984120|gb|ACT48978.1| Radical SAM domain protein [Methylotenera mobilis JLW8] Length = 212 Score = 155 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 91/234 (38%), Gaps = 55/234 (23%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MKL I EIF +LQGE G VF R +GC + +C +CDT + G+ Sbjct: 1 MKL-KIHEIFYSLQGESSRVGLPTVFVRLTGCPM-----------RCVYCDTAYAFSGGS 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 ++ D+I + E Y +TGGEPL Q D L++AL +G+ +++ET Sbjct: 49 N------MEVEDIITK---VAEYATPYVTVTGGEPLAQKDCHVLLKALCDQGYSVSLETG 99 Query: 120 GTIEPPQGIDWICVSPKAGC--DLKIKGGQELKLVF--PQVNVSPENYIGF------DFE 169 G ID V P+ D+K ELK ++ + + F D+E Sbjct: 100 GA------IDIAPVDPRVSVILDVKTPDSGELKNNLWGNLAHLKKADEVKFVLCSRADYE 153 Query: 170 R---------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 P+ + LA R+ +Q HK + Sbjct: 154 WAKDFLAKEQLTAKCSVLFSPVYSQLAPAD--LADWVLADKLPVRMQLQLHKIL 205 >gi|312792432|ref|YP_004025355.1| Radical SAM domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179572|gb|ADQ39742.1| Radical SAM domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 225 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 61/225 (27%), Positives = 95/225 (42%), Gaps = 41/225 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 +++ E F++++GEG +G AVF RF+GCNL C +CDT++ + K Sbjct: 14 FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------SCSWCDTNYA-TENPKYE 61 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + ++D L I I + LTGGEPL+Q + LI L GFE+ +ETNG++ Sbjct: 62 QIDIDTLLSFIASTGI------KRVTLTGGEPLIQPYIYILIDRLIYEGFEVNIETNGSV 115 Query: 123 -------EPPQGIDWICVSPKAGCDLKIKGG------QELKLVFP--QVNVSPENYIGFD 167 + +D+ C S + + LK V + S E I Sbjct: 116 SIKHVPRDAIITMDYKCPSSGMEDRMIVDNINFLGQKDVLKFVVGTYEDLKSAERIIKTF 175 Query: 168 FER--FSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 R P+ G + + +N RL +Q HK I Sbjct: 176 KPRCNIFFSPVFGKIEPR---EIVKFLLENELFDARLQLQLHKII 217 >gi|42521688|ref|NP_967068.1| radical activating enzyme [Bdellovibrio bacteriovorus HD100] gi|39574218|emb|CAE77722.1| radical activating enzyme [Bdellovibrio bacteriovorus HD100] Length = 212 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 89/232 (38%), Gaps = 54/232 (23%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF ++QGE + G VF R + CNL +C +CDT + +G Sbjct: 1 MLKINEIFYSIQGETTYVGCPTVFVRLTACNL-----------RCTYCDTKYSYYEGE-- 47 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 + L +I E + +TGGEPLLQ +V L++ L +G+ +++ET+G+ Sbjct: 48 ----MQTLEAIIAE---IDSHKAPNVCITGGEPLLQKEVHTLMKTLCDKGYLVSLETSGS 100 Query: 122 IEPPQGIDWICVSP--KAGCDLKIKGGQELK-LVFPQVNVS-PENYIGFDF--------- 168 V P K D+K V + S P F Sbjct: 101 KSVEM------VDPRVKIILDVKTPDSGAADSFVMENIGFSTPSTEYKFVICSEKDFEWS 154 Query: 169 ERFSLQ------------PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 E F Q P G E LA +N RL +Q HK+I Sbjct: 155 EEFCRQHNLFEKFVVLYSPSYGQVSERW--LAEKILQKNSSARLQLQLHKYI 204 >gi|29653453|ref|NP_819145.1| radical SAM domain-containing protein [Coxiella burnetii RSA 493] gi|153207177|ref|ZP_01945956.1| radical SAM domain protein [Coxiella burnetii 'MSU Goat Q177'] gi|154707102|ref|YP_001425323.1| queuosine biosynthesis protein [Coxiella burnetii Dugway 5J108-111] gi|161830218|ref|YP_001596061.1| radical SAM domain-containing protein [Coxiella burnetii RSA 331] gi|165918380|ref|ZP_02218466.1| radical SAM domain protein [Coxiella burnetii RSA 334] gi|212213378|ref|YP_002304314.1| queuosine biosynthesis protein [Coxiella burnetii CbuG_Q212] gi|212219428|ref|YP_002306215.1| queuosine biosynthesis protein [Coxiella burnetii CbuK_Q154] gi|29540715|gb|AAO89659.1| queuosine biosynthesis protein [Coxiella burnetii RSA 493] gi|120576838|gb|EAX33462.1| radical SAM domain protein [Coxiella burnetii 'MSU Goat Q177'] gi|154356388|gb|ABS77850.1| queuosine biosynthesis protein [Coxiella burnetii Dugway 5J108-111] gi|161762085|gb|ABX77727.1| radical SAM domain protein [Coxiella burnetii RSA 331] gi|165917886|gb|EDR36490.1| radical SAM domain protein [Coxiella burnetii RSA 334] gi|212011788|gb|ACJ19169.1| queuosine biosynthesis protein [Coxiella burnetii CbuG_Q212] gi|212013690|gb|ACJ21070.1| queuosine biosynthesis protein [Coxiella burnetii CbuK_Q154] Length = 213 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 85/235 (36%), Gaps = 58/235 (24%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M I EIF +LQGE G VF R +GC L +C +CDT + G Sbjct: 1 MDKLRITEIFYSLQGETKTVGLPTVFVRLTGCPL-----------RCHYCDTPYAFYGGQ 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 L D++ + + RY +TGGEPL Q +PL+Q L + +++ET+ Sbjct: 50 S------LLLEDVVHQ---VASYQTRYVTVTGGEPLAQPACLPLLQRLCDLNYRVSLETS 100 Query: 120 GTIEPPQGIDWICVSPKA--GCDLKIKGGQE-----------------LKLVFPQVNVSP 160 G + D V P+ D+K G +E +K V + Sbjct: 101 GAL------DISNVDPRVIKIVDVKTPGSKEMARNRFGNFEYLLPHDQVKFVIC--DRRD 152 Query: 161 ENYIGFDFERFSL--------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207 + R+ L P + LA R +Q HK+ Sbjct: 153 YEWAKDIINRYDLISRAEVLFSP--SHEQLDKQQLADWIVEDRLSVRFQLQLHKY 205 >gi|313126238|ref|YP_004036508.1| organic radical activating enzyme [Halogeometricum borinquense DSM 11551] gi|312292603|gb|ADQ67063.1| organic radical activating enzyme [Halogeometricum borinquense DSM 11551] Length = 257 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 19/142 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I E+F +LQGEG G + F R SGCNL +C FCD+ + T Sbjct: 19 LPINELFASLQGEGKLVGVPSTFVRTSGCNL-----------RCWFCDSYHTSWEPTH-A 66 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 VD++ + ++ + VLTGGEPL+ + PL++ L + G+ + VETNGT+ Sbjct: 67 WMGVDEIVSAVTA------RDPDHVVLTGGEPLIHDETAPLLERLAEHGYHVTVETNGTL 120 Query: 123 EPPQGIDWICVSPKAGCDLKIK 144 P ID +SPK Sbjct: 121 VPDAPIDLASISPKLSTSTPTP 142 >gi|146295178|ref|YP_001178949.1| radical SAM domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145408754|gb|ABP65758.1| Radical SAM domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 217 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 60/230 (26%), Positives = 96/230 (41%), Gaps = 43/230 (18%) Query: 1 MKL--YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58 MK + + E F++++GEG +G A+F RF+GCNL C +CDT + Q Sbjct: 1 MKKAKFKVVEKFVSIEGEGIRSGFPAIFLRFAGCNL-----------NCSYCDTRYA-TQ 48 Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVE 117 +DQ+ + + + LTGGEPL+Q + LI +L K GFE+ +E Sbjct: 49 NPDYEEITLDQILEYVNSIG------FKRVTLTGGEPLIQPHIHDLIDSLIKEGFEVNIE 102 Query: 118 TNGTIEP-------PQGIDWICVSPKAGCDLKIKG------GQELKLVF-PQVNVSPENY 163 TNG+++ +D+ C S + ++ LK V ++ Sbjct: 103 TNGSVDIRYVNRNAIITMDYKCPSSGMEDKMLLENIKYLGKSDVLKFVVGTNQDLERAFE 162 Query: 164 IGFDFE---RFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208 I FE P+ G +S+ + RL +Q HK I Sbjct: 163 IIRLFEPSCNIYFSPVHGKIEP---KEIVSFILSHKLQNCRLQLQLHKII 209 >gi|302879778|ref|YP_003848342.1| Radical SAM domain-containing protein [Gallionella capsiferriformans ES-2] gi|302582567|gb|ADL56578.1| Radical SAM domain protein [Gallionella capsiferriformans ES-2] Length = 219 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 57/229 (24%), Positives = 94/229 (41%), Gaps = 50/229 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE G VF R +GC L +C +CDT + G Sbjct: 10 LRITEIFFSLQGETRLIGLPTVFVRLTGCPL-----------RCVYCDTAYAFSGGKNH- 57 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 LA+++++ + + RY +TGGEPL Q + +PL++AL G+++++ET+G + Sbjct: 58 -----TLAEILQQ---VAQYKTRYVTVTGGEPLAQRNCLPLLKALCDAGYQVSLETSGAL 109 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVNV-SPENYIGF-------------- 166 + +D + D+K E+ K + + + +P++ I F Sbjct: 110 DI-GAVDARVM---RVVDIKTPASGEVDKNRWENLAILTPQDEIKFVLCDENDYDWACQI 165 Query: 167 -------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 D P G T LA R +Q HK + Sbjct: 166 LAQYHLADQCPVLFSPAQGDLDP--TQLADWILRDGLPVRFQLQLHKIL 212 >gi|30248245|ref|NP_840315.1| radical activating enzyme [Nitrosomonas europaea ATCC 19718] gi|30180130|emb|CAD84132.1| Radical activating enzymes [Nitrosomonas europaea ATCC 19718] Length = 211 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 57/230 (24%), Positives = 91/230 (39%), Gaps = 50/230 (21%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGE G VF R +GC L +C +CDT + G Sbjct: 1 MLRITEIFYSLQGETSRMGLPTVFVRLTGCPL-----------RCGYCDTGYAFSGGKS- 48 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 +++++ E RY +TGGEPL Q D + L+ AL RG+ +++ET+G Sbjct: 49 -----MSISEIMGE---VASFSPRYVTVTGGEPLAQADSLVLLAALCDRGYSVSLETSGA 100 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLV----------FPQVNVSPENYIGFDFERF 171 ++ +D VS D+K G E++ ++ + +D+ R Sbjct: 101 LDI-ARVD-ARVS--RIVDIKTPGSGEVEKNHWNNLAYLTSHDEIKFVLCDRADYDWARQ 156 Query: 172 SL-------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 L P G + + I RL +Q HK + Sbjct: 157 KLLELKLDVICPVLFSPAYGQLVPADLAAWI--LQDQLPVRLQLQLHKLL 204 >gi|188577425|ref|YP_001914354.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521877|gb|ACD59822.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae PXO99A] Length = 213 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 90/234 (38%), Gaps = 54/234 (23%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M I EIFL+LQGE AG VF R +GC L +C +CDT + Sbjct: 1 MPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCVYCDTAYAFH--- 46 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 G +++D + + + R+ +TGGEPL Q + L+Q L G+++++ET+ Sbjct: 47 GGEWHDIDDVLAEVATHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETS 100 Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVNVSPE-NYIGF------DFE 169 G ++ V P+ D+K G+E + + + + + I F D+E Sbjct: 101 GALDVSA------VDPRVSRVVDIKTPASGEEARNRWENLLLLTARDQIKFVICSRADYE 154 Query: 170 ---------------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 P LA R +Q HK + Sbjct: 155 WSREIVAAHALDRRCTVWFSPSKSEVGPR--QLADWIVADRLPVRFQMQLHKLL 206 >gi|188990578|ref|YP_001902588.1| Putative radical activating enzyme [Xanthomonas campestris pv. campestris str. B100] gi|167732338|emb|CAP50530.1| Putative radical activating enzyme [Xanthomonas campestris pv. campestris] Length = 227 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 87/230 (37%), Gaps = 46/230 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + I EIFL+LQGE AG VF R +GC L +C +CDT + Sbjct: 15 LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCTYCDTAYAFH--- 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 G +++D + + + R+ +TGGEPL Q + L+ L GF++++ET+ Sbjct: 61 GGEWHDIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLALLHKLCDAGFDVSLETS 114 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQE----------LKLVFPQVNVSPENYIGFDFE 169 G ++ + D+K E L Q+ + +++ Sbjct: 115 GALDVSA----VDARVSRVVDIKTPASGEDHRNRWDNLPLLTARDQIKFVICSRADYEWS 170 Query: 170 R--FSLQPMDG---------PFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 R + Q +D LA P R +Q HK + Sbjct: 171 RDVVATQALDRRCTVWFSPSKGQVSARELADWIVADRPPVRFQMQLHKIL 220 >gi|284164674|ref|YP_003402953.1| radical SAM protein [Haloterrigena turkmenica DSM 5511] gi|284014329|gb|ADB60280.1| Radical SAM domain protein [Haloterrigena turkmenica DSM 5511] Length = 274 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 70/142 (49%), Gaps = 19/142 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I E+F +LQGEG AG +VF R SGCNL +C FCD+ + T Sbjct: 33 LPINELFYSLQGEGTLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPTH-A 80 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 ++++ IE + + VLTGGEPL+ + V L++AL+ RG+ VETNGTI Sbjct: 81 WLGLEEILAEIESH------DADHVVLTGGEPLIHEESVALLEALDDRGYHTTVETNGTI 134 Query: 123 EPPQGIDWICVSPKAGCDLKIK 144 ID +SPK Sbjct: 135 NRDAPIDLASISPKLESSTPTP 156 >gi|302870906|ref|YP_003839542.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47] gi|302573765|gb|ADL41556.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47] Length = 224 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 95/225 (42%), Gaps = 41/225 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 +++ E F++++GEG +G AVF RF+GCNL C +CDT + + K Sbjct: 13 FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------SCSWCDTKYA-TENPKYE 60 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + ++D L + I I + LTGGEPL+Q + LI L GFE+ +ETNG++ Sbjct: 61 QIDIDTLLNFIASTGI------KRVTLTGGEPLIQPYIYILIDRLIYEGFEVNIETNGSV 114 Query: 123 -------EPPQGIDWICVSPKAGCDLKIKGG------QELKLVF--PQVNVSPENYIGFD 167 + +D+ C S + + LK V + S E I Sbjct: 115 SIKCVPRDAIITMDYKCPSSGMEDRMIVDNINFLGQKDVLKFVVATHEDLKSAERIIKTF 174 Query: 168 FER--FSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 + P+ G + + +N R+ +Q HK I Sbjct: 175 NPKCNIFFSPVFGKIEP---AEIVKFLLENGLFDARVQLQLHKII 216 >gi|15607013|ref|NP_214395.1| hypothetical protein aq_2035 [Aquifex aeolicus VF5] gi|2984272|gb|AAC07798.1| hypothetical protein aq_2035 [Aquifex aeolicus VF5] Length = 219 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 93/224 (41%), Gaps = 39/224 (17%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 L ++ E++ ++QGEG G +VF R GCNL +C +CD Sbjct: 11 TLIALNEVYESIQGEGLLVGLPSVFIRLQGCNL-----------RCPWCDQPEAL--SFS 57 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI-QALNKRGFEIAVETNG 120 G + + L + ++ + ++ V+TGGEP ++P I + L G+ + +ETNG Sbjct: 58 GRKVKLSSLINELK------KFTAKHIVITGGEPFAHRELPFIVEFLLSEGYSVQIETNG 111 Query: 121 TIEPPQGIDW-----ICVSPKAGCDL-----KIKGGQELKLVFPQVNVSPENYIGFDFER 170 T+ + + I SPK +K +ELK V + S E +FER Sbjct: 112 TLWVEEMEKFAEGIHITCSPKGVAKYYVHPKILKYAKELKFVVDK-EFSKEVLKKEEFER 170 Query: 171 FS------LQPMDG--PFLEENTNLAISYCFQNPKWRLSVQTHK 206 F LQP +E+ + + R+ Q HK Sbjct: 171 FLREGKVVLQPESNRKEMMEKALKIQKELLKECYTVRVIPQVHK 214 >gi|54297969|ref|YP_124338.1| hypothetical protein lpp2024 [Legionella pneumophila str. Paris] gi|53751754|emb|CAH13176.1| hypothetical protein lpp2024 [Legionella pneumophila str. Paris] Length = 217 Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 91/234 (38%), Gaps = 50/234 (21%) Query: 1 MKLY----SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG 56 MK + I EIF +LQGE G VF R +GC L +C++CDT + Sbjct: 1 MKRFNEQLRITEIFHSLQGESVTVGLPTVFVRLTGCPL-----------RCQYCDTAYAF 49 Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIA 115 + G +D + + + + ++ +TGGEPL Q VPL+ L G+ ++ Sbjct: 50 ---SGGEVVEIDDILNKV------ASYQCQHVCVTGGEPLAQPGCVPLLSKLCDAGYSVS 100 Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF------- 166 +ET+G + +D + DLK +E K + +N + P + I F Sbjct: 101 LETSGARDI-ASVDQRVM---IVMDLKTPDSKEADKNLLSNLNFLKPTDQIKFVLCSRND 156 Query: 167 ------------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 ER L T+LA R +Q HK + Sbjct: 157 YEWACSMLSEYQLAERVQLLFSPSWNQLNPTDLANWIIQDKLPVRFQLQLHKIL 210 >gi|254000097|ref|YP_003052160.1| Radical SAM domain-containing protein [Methylovorus sp. SIP3-4] gi|253986776|gb|ACT51633.1| Radical SAM domain protein [Methylovorus sp. SIP3-4] Length = 212 Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 92/232 (39%), Gaps = 51/232 (21%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MKL I EIF +LQGE G VF R +GC + +C +CDT + G+ Sbjct: 1 MKL-RIHEIFHSLQGESSRVGLPTVFVRLTGCPM-----------RCVYCDTAYAFHGGS 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 +D + + E Y +TGGEPL Q D L+ L G+ +++ET Sbjct: 49 S---MEIDDIMQKVAE------YGAHYVTVTGGEPLAQRDCHVLLTRLCDAGYSVSLETG 99 Query: 120 GTIEPPQGIDWICVSPKAGC--DLKIKGGQEL-KLVFPQ-VNVSPENYIGF--------- 166 G +D V P+ D+K G EL K ++ ++ ++ + F Sbjct: 100 GA------MDIANVDPRVSVILDIKTPGSGELEKNLWGNLAHLKAQDEVKFVLCDHADYL 153 Query: 167 -DFERFSLQPM--------DGPFLEEN-TNLAISYCFQNPKWRLSVQTHKFI 208 E QP+ + + N T LA R+ VQ HK + Sbjct: 154 WAKELLDKQPLHRTCSVLFSPVYSQVNPTELAEWILADKLPVRMQVQLHKIL 205 >gi|74318221|ref|YP_315961.1| radical activating enzyme [Thiobacillus denitrificans ATCC 25259] gi|74057716|gb|AAZ98156.1| radical activating enzyme; radical SAM family [Thiobacillus denitrificans ATCC 25259] Length = 216 Score = 154 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 85/235 (36%), Gaps = 58/235 (24%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 I EIFL+LQGE G VF R +GC L +CR+CDT + Sbjct: 5 PTLRITEIFLSLQGETSRTGLATVFVRLAGCPL-----------RCRWCDTTYSF---QG 50 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 G ++D++ + +TGGEPL Q + +PL+ L G+ +++ET+G Sbjct: 51 GETVSLDEVLARV------AGFGVSVVCVTGGEPLAQKNCLPLLARLCDAGYSVSLETSG 104 Query: 121 TIEPPQGIDWICVSPKAGCDLKIK-------------------GGQELKLVFPQVNVSPE 161 ++ V P+ + +K E+K V + + Sbjct: 105 ALDVSA------VDPRVSRIVDVKPPESGEVARNRWENLAHLGAHDEIKFVL--ADRADY 156 Query: 162 NYIGFDFERFSL--------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + +L P+ G LA R+ VQ HK + Sbjct: 157 EWAREVLRERALERVCPVLFSPVQGELAPA--QLAEWILADRLPVRMQVQLHKLL 209 >gi|301063545|ref|ZP_07204071.1| radical SAM domain protein [delta proteobacterium NaphS2] gi|300442354|gb|EFK06593.1| radical SAM domain protein [delta proteobacterium NaphS2] Length = 215 Score = 154 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 56/228 (24%), Positives = 94/228 (41%), Gaps = 44/228 (19%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + EIF ++QGE +AG VF R +GCNL +C +CDT + + Sbjct: 1 MTLRVNEIFYSIQGESSYAGLPCVFVRLTGCNL-----------RCSYCDTRYAY---EE 46 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 GG ++ + + I + R +TGGEPL+Q P LI++L + G+++ +ETNG Sbjct: 47 GGILEINHIFEQI------APMQCRLVEITGGEPLVQEKTPILIESLLEDGYDVLLETNG 100 Query: 121 TIEPP-------QGIDWICVSPKAGCDLKIKG------GQELKLVF-PQVNVSPENYIGF 166 + + + +D C S + ++ E+K V + + I Sbjct: 101 SHDISRVDNRCVKIVDIKCPSSGMHNHMDMENLNRLSAKDEIKFVLGTREDYEYAREIVI 160 Query: 167 DFERFSL-------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207 + L P+ G E LA + RL +Q K+ Sbjct: 161 RMKSRFLKISSVNFSPVFGQLKPE--TLAEWILEDHLPCRLHLQLQKY 206 >gi|288818575|ref|YP_003432923.1| radical SAM domain protein [Hydrogenobacter thermophilus TK-6] gi|288787975|dbj|BAI69722.1| radical SAM domain protein [Hydrogenobacter thermophilus TK-6] gi|308752166|gb|ADO45649.1| Radical SAM domain protein [Hydrogenobacter thermophilus TK-6] Length = 218 Score = 154 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 96/226 (42%), Gaps = 37/226 (16%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 SI EI+ ++QGEG G+ +F RF GCNL +C +CD K Sbjct: 12 LSINEIYPSVQGEGLLIGKPCLFVRFQGCNL-----------RCPWCDEPSAL--SFKRA 58 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI-QALNKRGFEIAVETNGTI 122 ++ +L ++ + ++ VLTGGEP + ++ L+ Q L RG+ + +ETNGT+ Sbjct: 59 NTDLKELLQELQ------KYPQKHVVLTGGEPFAEPNLHLLVQELLCRGYSVQIETNGTL 112 Query: 123 EPPQGIDW-----ICVSPKAGCDL-----KIKGGQELKLVFPQV----NVSPENYIGFDF 168 + I SPK D + +ELK V + ++ F Sbjct: 113 WNENLREVVSQVHITCSPKGVADWYVHPAVLSSAKELKFVVDHELCYNVIKRREFMPFLE 172 Query: 169 ERF-SLQPMDG--PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 E LQP FL++ L + R+ Q HK IG++ Sbjct: 173 EGLVVLQPEGNKTKFLQKALELQNLLLREGYTVRVVPQMHKLIGLK 218 >gi|114330319|ref|YP_746541.1| radical SAM domain-containing protein [Nitrosomonas eutropha C91] gi|114307333|gb|ABI58576.1| Radical SAM domain protein [Nitrosomonas eutropha C91] Length = 211 Score = 154 bits (390), Expect = 8e-36, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 89/230 (38%), Gaps = 50/230 (21%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + EIF +LQGE G VF R +GC L +C +CDT + + G Sbjct: 1 MLRVTEIFYSLQGETSRMGLPTVFIRLTGCPL-----------RCGYCDTSYAF---SGG 46 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 ++ ++ + Y +TGGEPL Q D + L+ AL RG+ +++ET+G Sbjct: 47 ESMDISEIMRKV------ASFSPHYVTVTGGEPLAQADSLTLLTALCDRGYSVSLETSGA 100 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGFDFE-----RFSLQ 174 ++ + + D+K G E+ K + ++ ++ + I F +++Q Sbjct: 101 LDISRVDTRVS----RILDIKTPGSGEMEKNYWNNLDCLTAHDEIKFVLCDRTDYNWAMQ 156 Query: 175 ----------------PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 P+ I RL Q HK + Sbjct: 157 KLLTLELANICPVLFSPVYNQLDPAALAAWI--LQDRLPVRLQFQLHKLL 204 >gi|83593294|ref|YP_427046.1| radical SAM family protein [Rhodospirillum rubrum ATCC 11170] gi|83576208|gb|ABC22759.1| Radical SAM [Rhodospirillum rubrum ATCC 11170] Length = 235 Score = 154 bits (390), Expect = 8e-36, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 101/238 (42%), Gaps = 48/238 (20%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I+E+F TLQGEG +G+ +VF R +GCNL +C +CDTDF + Sbjct: 16 ESLWIQEVFYTLQGEGPFSGQPSVFVRTAGCNL-----------RCAWCDTDF----ESS 60 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + + +L +I+ + + VLTGGEPL Q PL++AL RG + +ETNGT Sbjct: 61 AWKPPLPELLAVIDSRRP---RVCDLVVLTGGEPLRQEVGPLVRALLARGLRVQIETNGT 117 Query: 122 IEPP----QGIDWICVSPKAGC--DLKIKGGQELKLVFPQVNVSPENYIGF-------DF 168 + G+ +C SPK + K V P + + Sbjct: 118 LWRDLPFGPGLSIVC-SPKTRTLDPQLVPRIDAFKYVIAAGETDPTDGLPALSTQHPGRA 176 Query: 169 ERF---------SLQPMD------GPFLEENTNLAISYCFQ-NPKWRLSVQTHKFIGI 210 ER + P D P E+ NLA + +RL VQ HK + I Sbjct: 177 ERLFRPPPGVPVFVMPRDDHGTPARPGRGEDDNLAEAAASALRFGYRLCVQVHKILKI 234 >gi|289661912|ref|ZP_06483493.1| putative radical activating enzyme [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 227 Score = 154 bits (390), Expect = 8e-36, Method: Composition-based stats. Identities = 55/234 (23%), Positives = 90/234 (38%), Gaps = 54/234 (23%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + I EIFL+LQGE AG VF R +GC L +C +CDT + Sbjct: 15 LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAYAFH--- 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 G +++D + + + R+ +TGGEPL Q + L+Q L G+++++ET+ Sbjct: 61 GGEWHDIDAIVAEVARHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETS 114 Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVNVSPE-NYIGF------DFE 169 G ++ V P+ D+K G+E + + + + + I F D+E Sbjct: 115 GALDVSA------VDPRVSRVVDIKTPASGEEARNRWENLPLLTARDQIKFVICSRADYE 168 Query: 170 ---------------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 P LA R +Q HK + Sbjct: 169 WSREIVAAHALDRRCTVWFSPSKSEVSPR--QLADWIVADRLPVRFQMQLHKLL 220 >gi|163815376|ref|ZP_02206751.1| hypothetical protein COPEUT_01541 [Coprococcus eutactus ATCC 27759] gi|158449350|gb|EDP26345.1| hypothetical protein COPEUT_01541 [Coprococcus eutactus ATCC 27759] Length = 222 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 46/234 (19%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y + E F+++ GE AG +AVF RF+GCNL C +CDT + G Sbjct: 1 MSTYRVVERFISINGEAARAGELAVFIRFAGCNL-----------NCGYCDTKWANEPGV 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118 D+L D + + + LTGGEPL+Q D+ L+ + + +ET Sbjct: 50 DYQELTEDELVDYVRRTEV------KNVTLTGGEPLIQKDIDKLLLAFALEDDIRVEIET 103 Query: 119 NGTIEPPQ----------GIDWICVSPKAGCDL------KIKGGQELKLVF-PQVNVS-- 159 NG+++ + +D+ C S D+ I +K V Q ++ Sbjct: 104 NGSVDIAEFKALGGNVSYTLDYKCPSSGMESDMCLANYNYIDKNDSVKFVVGSQEDLEKC 163 Query: 160 ---PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 Y + R + P+ G + + + +N +L +Q HKFI Sbjct: 164 LEIIREYALDERTRVFISPVYGSIDPAD---IVDFMIENGMNDVKLQLQLHKFI 214 >gi|15838492|ref|NP_299180.1| hypothetical protein XF1894 [Xylella fastidiosa 9a5c] gi|9106987|gb|AAF84700.1|AE004009_7 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 227 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 90/227 (39%), Gaps = 46/227 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIFL+LQGE G VF R +GC L +C++CDT + G Sbjct: 18 LKISEIFLSLQGEANSVGWPTVFVRLTGCPL-----------RCQYCDTAYAFHGGEWC- 65 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 ++D + + + R+ +TGGEPL Q + L++ L GFE+++ET+G + Sbjct: 66 --SIDTIVSEVRSYGV------RHVCVTGGEPLAQKRCLLLLEKLCDAGFEVSLETSGAL 117 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQ-VNVSPENYIGF-------------- 166 + + + D+K G E + +P ++P + I F Sbjct: 118 DIAA----VDLRVSRVVDIKTPGSGEAHRNHWPNLALLTPHDQIKFVLCSRADYEWARTC 173 Query: 167 ----DFERFSLQPMDGPFLEEN-TNLAISYCFQNPKWRLSVQTHKFI 208 + ER + + T LA R +Q HK + Sbjct: 174 VAEHELERRCMVWFSPSKQDIAPTVLADWIISDRLGVRFQLQLHKLL 220 >gi|294626853|ref|ZP_06705445.1| radical activating enzyme [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598867|gb|EFF43012.1| radical activating enzyme [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 227 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 55/234 (23%), Positives = 91/234 (38%), Gaps = 54/234 (23%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + I EIFL+LQGE AG VF R +GC L +C +CDT + Sbjct: 15 LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAYAFH--- 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 G +++D + + + R+ +TGGEPL Q + L++ L G+++++ET+ Sbjct: 61 GGQWHDIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETS 114 Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIKG-GQELKLVFPQVNVSPE-NYIGF------DFE 169 G ++ V P+ D+K G G+E + + + + + I F D+E Sbjct: 115 GALDVSA------VDPRVSRVVDIKTPGSGEEARNRWENLPLLTARDQIKFVICSRADYE 168 Query: 170 ---------------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 P LA R +Q HK + Sbjct: 169 WSREIVAAHALDRRCTVWFSPSKSEVSPR--QLADWIVADRLPVRFQMQLHKLL 220 >gi|90417119|ref|ZP_01225047.1| radical activating enzyme family protein [marine gamma proteobacterium HTCC2207] gi|90331135|gb|EAS46391.1| radical activating enzyme family protein [marine gamma proteobacterium HTCC2207] Length = 216 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 87/232 (37%), Gaps = 55/232 (23%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE G VF R +GC L +C +CDT + G Sbjct: 6 LRITEIFHSLQGETSTVGLPTVFVRLTGCPL-----------RCGYCDTAYAF---EGGS 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 ++ + + + + +Y +TGGEPL Q + L++ L G+ +++ET+G + Sbjct: 52 KWTLSDILSTV------ADYGAKYVTVTGGEPLAQPQCIELLKQLCDLGYRVSLETSGAM 105 Query: 123 EPPQGIDWICVSPKA--GCDLKIKGGQEL-KLVFPQVN-VSPENYIGFDF---------- 168 V P+ DLK G E+ K ++ + + P + + F Sbjct: 106 PVED------VDPRVFKIVDLKTPGSGEVSKNLYSNIEYLLPHDEVKFVICDRQDYDWSC 159 Query: 169 ------------ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 P G LA R+ +QTHK+I Sbjct: 160 MKIDELGLQGRVAEILFSPSQGVLPPA--ELAKWMLHDKLNLRMQIQTHKYI 209 >gi|323212709|gb|EFZ97526.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] Length = 121 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 55/134 (41%), Gaps = 32/134 (23%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSDRE 51 Query: 58 -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 + K G + + L +I Q R+ V+TGGEP + +PL Sbjct: 52 VSLFSILAKTKESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLTDL 107 Query: 107 LNKRGFEIAVETNG 120 L K GF +ET+G Sbjct: 108 LEKSGFSCQIETSG 121 >gi|312877003|ref|ZP_07736977.1| Radical SAM domain protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796234|gb|EFR12589.1| Radical SAM domain protein [Caldicellulosiruptor lactoaceticus 6A] Length = 225 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 94/225 (41%), Gaps = 41/225 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 +++ E F++++GEG +G AVF RF+GCNL C +CDT + + + Sbjct: 14 FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------NCSWCDTRYAN-ENPQYE 61 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + ++D L + I I + LTGGEPL+Q + LI L GFE+ +ETNG++ Sbjct: 62 QVDIDTLLNFISSTGI------KRITLTGGEPLIQPYIYILIDRLIYEGFEVNIETNGSV 115 Query: 123 -------EPPQGIDWICVSPKAGCDLKIKGG------QELKLVFP--QVNVSPENYIGFD 167 + +D+ C S + + LK V + E I Sbjct: 116 SIKHVPRDAIITMDYKCPSSGMEDRMIVDNINFLGQKDVLKFVVGTYEDLKKAERIIKTF 175 Query: 168 FER--FSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 R P+ G + + +N RL +Q HK I Sbjct: 176 KPRCNIFFSPVFGKIEPR---EIVKFLLENELFDARLQLQLHKII 217 >gi|312134204|ref|YP_004001542.1| Radical SAM domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311774255|gb|ADQ03742.1| Radical SAM domain protein [Caldicellulosiruptor owensensis OL] Length = 224 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 60/225 (26%), Positives = 93/225 (41%), Gaps = 41/225 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 +++ E F++++GEG +G AVF RF+GCNL C +CDT + + K Sbjct: 13 FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------SCSWCDTKYA-TENPKYE 60 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + ++D L I I + LTGGEPL+Q + LI L GFE+ +ETNG++ Sbjct: 61 QIDIDTLLSFIASSGI------KRVTLTGGEPLIQPYIYILIDRLIYEGFEVNIETNGSV 114 Query: 123 EP-------PQGIDWICVSPKAGCDLKIKGG------QELKLVFP--QVNVSPENYIGFD 167 +D+ C S + + LK V + S E I Sbjct: 115 SIKHVPRNAIITMDYKCPSSGMEDRMIVDNIHFLGQKDVLKFVVGTYEDLKSAERIIKTF 174 Query: 168 FER--FSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 R P+ G + + +N R+ +Q HK I Sbjct: 175 KPRCNIFFSPVFGKIEP---AEIVKFLLENGLFDARVQLQLHKII 216 >gi|166712980|ref|ZP_02244187.1| radical activating enzyme [Xanthomonas oryzae pv. oryzicola BLS256] Length = 227 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 55/234 (23%), Positives = 90/234 (38%), Gaps = 54/234 (23%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + I EIFL+LQGE AG VF R +GC L +C +CDT + Sbjct: 15 LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCVYCDTAYAFH--- 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 G +++D + + + R+ +TGGEPL Q + L+Q L G+++++ET+ Sbjct: 61 GGEWHDIDDVLAEVATHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETS 114 Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVNVSPE-NYIGF------DFE 169 G ++ V P+ D+K G+E + + + + + I F D+E Sbjct: 115 GALDVS------TVDPRVSRVVDIKTPASGEEARNRWENLPLLTARDQIKFVICSRADYE 168 Query: 170 ---------------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 P LA R +Q HK + Sbjct: 169 WSREIVAAHALDRRCTVWFSPSKSEVGPR--QLADWIVADRLPVRFQMQLHKLL 220 >gi|82703824|ref|YP_413390.1| radical SAM family protein [Nitrosospira multiformis ATCC 25196] gi|82411889|gb|ABB75998.1| Radical SAM [Nitrosospira multiformis ATCC 25196] Length = 234 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 58/229 (25%), Positives = 95/229 (41%), Gaps = 50/229 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + EIFL+LQGE G VF R +GC L +C +CDT + +G + Sbjct: 25 LRVNEIFLSLQGETSRVGLPTVFVRLTGCPL-----------RCGYCDTAYAFHEGER-- 71 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 LA ++ E R+ +TGGEPL Q + + L++ L G+ +++ET G + Sbjct: 72 ----LSLAAILME---VARHGARHVTVTGGEPLAQKECLALLRLLCDAGYSVSMETGGAL 124 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF-----DFERFSL-- 173 + + + DLK G E+ K ++ V ++ + + F D R+++ Sbjct: 125 DISK----VDARVSRILDLKTPGSGEVEKNLWSNVQYLTSHDEVKFVLCDEDDYRWAVEM 180 Query: 174 --------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 P+ G E T LA R+ VQ HK + Sbjct: 181 MGKHRLDHTCPVLFSPVHGKL--EPTVLAEWILRDRLPVRMQVQLHKLL 227 >gi|254468966|ref|ZP_05082372.1| radical SAM domain protein [beta proteobacterium KB13] gi|207087776|gb|EDZ65059.1| radical SAM domain protein [beta proteobacterium KB13] Length = 212 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 89/231 (38%), Gaps = 49/231 (21%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M I EIF ++QGE G+ VF R +GC + +C +CDT + +G Sbjct: 1 MSTLRINEIFYSIQGESSRIGKPTVFVRLTGCPM-----------RCTYCDTAYAFHEGQ 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119 + + + + Y +TGGEPL Q + + L+ L + G+++++ET Sbjct: 50 QQEIEEI---------IQEIKQFDTNYVTVTGGEPLAQKNCIDLMNQLCELGYQVSLETG 100 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF----------PQVNVSPENYIGFD-- 167 G ++ I + K D+K E K F ++ ++Y F Sbjct: 101 GALD----IKDVHAKVKIILDVKTPKSNEDKNNFWPNLENIRTNDEIKFVIQDYEDFSWS 156 Query: 168 ---FERFSL-------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 +++ L P+ N LA RL VQ HK + Sbjct: 157 MDIIKKYQLNQGQILFSPVYKVL--ANEQLAGWILKHQLNVRLQVQLHKIL 205 >gi|118602444|ref|YP_903659.1| radical SAM domain-containing protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567383|gb|ABL02188.1| Radical SAM domain protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 213 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 57/227 (25%), Positives = 91/227 (40%), Gaps = 48/227 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 +I EIF +LQGEG G +VF R +GC L +C +CDT++ Sbjct: 6 LNINEIFYSLQGEGREVGLPSVFIRLTGCPL-----------RCTYCDTEYAFKGN---N 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +D++ I++ + Y +TGGEPL Q + L+ L K +++++ET+G+I Sbjct: 52 LMAIDEIIKKIKQ------YDTPYICVTGGEPLAQKNCCLLLNELVKNNYQVSLETSGSI 105 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLV----------FPQVNVSPENYIGFDFERFS 172 I + VS D+K E + Q+ + FD+ Sbjct: 106 ----NIQDVNVSVSIVMDIKTPDSGEFEQNKYTNIKKLTTKDQLKFVIRSRADFDWSVAI 161 Query: 173 L-----------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 L P+ G T LA Q R+ +Q HK + Sbjct: 162 LSQYPTAAGTLFSPVFGDITP--TQLADWILDQQLNVRMQLQLHKLL 206 >gi|307610772|emb|CBX00384.1| hypothetical protein LPW_21051 [Legionella pneumophila 130b] Length = 217 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 50/234 (21%) Query: 1 MKLY----SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG 56 MK + I EIF +LQGE G VF R +GC L +C++CDT + Sbjct: 1 MKRFNEQLRITEIFHSLQGESVTVGLPTVFVRLTGCPL-----------RCQYCDTAYAF 49 Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIA 115 + G +D + + + + ++ +TGGEPL Q +PL+ L G+ ++ Sbjct: 50 ---SGGEVVEIDDILNKV------ASYQCQHVCVTGGEPLAQPGCIPLLSKLCDAGYSVS 100 Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF------- 166 +ET+G + +D + DLK +E K + ++ + P + I F Sbjct: 101 LETSGARDI-ASVDQRVM---IVMDLKTPDSREADKNLLSNLSFLKPTDQIKFVLCSRTD 156 Query: 167 ------------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 ER L T+LA R +Q HK + Sbjct: 157 YEWACSMLSEYQLAERVQLLFSPSWNQLNPTDLANWIIQDKLPVRFQLQLHKIL 210 >gi|319786288|ref|YP_004145763.1| radical SAM protein [Pseudoxanthomonas suwonensis 11-1] gi|317464800|gb|ADV26532.1| Radical SAM domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 219 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 56/232 (24%), Positives = 89/232 (38%), Gaps = 56/232 (24%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIFL+LQGE AG VF R +GC L +C++CDT + G Sbjct: 10 LRITEIFLSLQGEANAAGWPTVFVRLTGCPL-----------RCQYCDTAYAFH---GGQ 55 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 + +D + + + R+ +TGGEPL Q + L++ L G ++++ET+G + Sbjct: 56 WWEIDAILAEVARHGV------RHVCVTGGEPLAQKRCLDLLRRLCDAGHDVSLETSGAL 109 Query: 123 EPPQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLVFP-------QV 156 + V P+ DLK G E +K V Sbjct: 110 DIAG------VDPRVSRVVDLKTPGSAEMARNRLENIPLLTARDQVKFVLCGRADYEWAR 163 Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 ++ E+ + + P G E +LA R +Q HK + Sbjct: 164 DMVAEHGLSARCDVLF-SPSKGQL--EARDLADWIVADRLPVRFQMQLHKIL 212 >gi|116619443|ref|YP_821599.1| radical SAM domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116222605|gb|ABJ81314.1| Radical SAM domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 224 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 94/233 (40%), Gaps = 52/233 (22%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I E+F ++QGEG G +VF R SGCNL +C +CDT + + +G Sbjct: 2 KIAELFYSIQGEGALLGVPSVFIRTSGCNL-----------RCSWCDTPYTSWR-PEGTD 49 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 ++Q+ D + G R+ V+TGGEP++ D+ L Q L R I +ET GT+ Sbjct: 50 LTLEQILDEV------GAHPARHVVVTGGEPMIAPDIVALTQRLRARNLHITIETAGTVF 103 Query: 124 PPQGIDWICVSPKAG-----------------------CDLKIKGGQELKLVFPQVNVSP 160 P D + +SPK +L + +LK V Q Sbjct: 104 EPVACDLMSISPKLANSTPDDARFSRQHERLRIQTPVLAELMARYPYQLKFVISQPGDLE 163 Query: 161 E-----NYIGFDFERFSLQPMDGPFLEENTNLAI---SYCFQNPKWRLSVQTH 205 E + D ER L P +G A+ C + +R S + H Sbjct: 164 EARSLVETLQADRERVILMP-EGVDPARLRERALWLAEICKE-EGFRFSPRLH 214 >gi|145635038|ref|ZP_01790744.1| predicted organic radical activating enzyme [Haemophilus influenzae PittAA] gi|145267646|gb|EDK07644.1| predicted organic radical activating enzyme [Haemophilus influenzae PittAA] Length = 181 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 90/203 (44%), Gaps = 35/203 (17%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +VF RF CNL C +CDT + + R++V Q+ + + Sbjct: 1 MPSVFVRFGKCNL-----------DCPWCDTPYNNFK-----RWSVSQILEKVRS----- 39 Query: 82 EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140 + ++TGGEP + + L++ G+ +A+ETNG P ID+I SPK+ Sbjct: 40 -FSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLKAIPAQIDYIATSPKSLYA 98 Query: 141 LK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP--MDGP--FLEENTNL-A 188 K I E+++V S I + + L P +DG LE T L Sbjct: 99 HKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSPCEIDGKMNLLETITLLGQ 158 Query: 189 ISYCFQNPKWRLSVQTHKFIGIR 211 ++ PKW+LS+QTHK IGI Sbjct: 159 LNQRSNKPKWQLSLQTHKLIGIE 181 >gi|325923406|ref|ZP_08185071.1| organic radical activating enzyme [Xanthomonas gardneri ATCC 19865] gi|325546121|gb|EGD17310.1| organic radical activating enzyme [Xanthomonas gardneri ATCC 19865] Length = 227 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 56/232 (24%), Positives = 85/232 (36%), Gaps = 50/232 (21%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + I EIFL+LQGE AG VF R +GC L +C +CDT + Sbjct: 15 LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCHYCDTAYAFH--- 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 G +++D + + + R+ +TGGEPL Q + L+Q L GF++++ET+ Sbjct: 61 GGEWHDIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGFDVSLETS 114 Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLVF---PQVN 157 G ++ V P+ D+K E +K V Sbjct: 115 GALDVSA------VDPRVSRVVDIKTPASGEEQRNRWENLPLLTARDQIKFVICSRADYE 168 Query: 158 VSPENYIGFDFERFSLQPMDGPFLE-ENTNLAISYCFQNPKWRLSVQTHKFI 208 S E +R E LA R +Q HK + Sbjct: 169 WSREIVAAHALDRRCTVWFSPSKSEVTPRELADWIVADRLPVRFQMQLHKLL 220 >gi|325929354|ref|ZP_08190484.1| organic radical activating enzyme [Xanthomonas perforans 91-118] gi|325540266|gb|EGD11878.1| organic radical activating enzyme [Xanthomonas perforans 91-118] Length = 227 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 90/234 (38%), Gaps = 54/234 (23%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + I EIFL+LQGE AG VF R +GC L +C +CDT + Sbjct: 15 LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAYAFH--- 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 G +++D + + + R+ +TGGEPL Q + L++ L G+++++ET+ Sbjct: 61 GGQWHDIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETS 114 Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVNVSPE-NYIGF------DFE 169 G ++ V P+ D+K G+E + + + + + I F D+E Sbjct: 115 GALDVSA------VDPRVSRVVDIKTPASGEEARNRWENLPLLTARDQIKFVICSRADYE 168 Query: 170 ---------------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 P LA R +Q HK + Sbjct: 169 WSREIVAAHALDRRCTVWFSPSKSEVSPR--QLADWIVADRLPVRFQMQLHKLL 220 >gi|91776688|ref|YP_546444.1| radical SAM family protein [Methylobacillus flagellatus KT] gi|91710675|gb|ABE50603.1| Radical SAM [Methylobacillus flagellatus KT] Length = 212 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 84/227 (37%), Gaps = 43/227 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EIF +LQGE G VF R +GC + +C +CDT++ G+ Sbjct: 1 MLRIHEIFHSLQGESSRVGLPTVFVRLTGCPM-----------RCVYCDTEYAFKGGSN- 48 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 +DQ+ + + RY +TGGEPL Q + L++ L G+E+++ET G Sbjct: 49 --MTLDQIMEQV------ASYGARYVCVTGGEPLAQKKHCLELLRQLCDAGYEVSLETGG 100 Query: 121 TIEPPQG-------IDWICVSPKAGCD------LKIKGGQELKLV------FPQVNVSPE 161 I +D ++K E+K+V + Sbjct: 101 AIATDGVDERVAIILDIKTPDSGEVAKNHWDNLSRLKPNDEVKIVLCSRADYEWAKQLLA 160 Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + + P+ + LA R+ VQ HK + Sbjct: 161 EHALNEKCAVIFSPVYSQVKPAD--LADWVLEDRLPVRMQVQLHKIL 205 >gi|294665414|ref|ZP_06730702.1| radical activating enzyme [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604825|gb|EFF48188.1| radical activating enzyme [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 227 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 55/234 (23%), Positives = 86/234 (36%), Gaps = 54/234 (23%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + I EIFL+LQGE AG VF R +GC L +C +CDT + Sbjct: 15 LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAYAFH--- 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 G +++D + + + R+ +TGGEPL Q + L++ L G+++++ET+ Sbjct: 61 GGQWHDIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETS 114 Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLVF---PQVN 157 G ++ V P+ D+K G E +K V Sbjct: 115 GALDVSA------VDPRVSRVVDIKTPGSGEEARNCWENLPLLTARDQIKFVICSRADYE 168 Query: 158 VSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 S E +R P LA R +Q HK + Sbjct: 169 WSREIVAAHALDRRCTVWFSPSKSEVSPR--QLADWIVADRLPVRFQMQLHKLL 220 >gi|225874258|ref|YP_002755717.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196] gi|225791949|gb|ACO32039.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196] Length = 226 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 97/238 (40%), Gaps = 55/238 (23%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EI+ ++QGE AGR +F R +GCNL +C +CD+++ T G Sbjct: 2 RLIEIYKSVQGESSFAGRPCIFVRLAGCNL-----------RCSWCDSEYTF---TGGEA 47 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNG-- 120 ++ D++ IE R TGGEPLLQ +P ++ L G+E+ +ET+G Sbjct: 48 FSDDEILARIEALAPV-----RLVEFTGGEPLLQAKQLIPFMERLLAAGYELMIETSGER 102 Query: 121 -TIEPPQG----IDWICVSPKAGCDLK--------IKGGQELKLVFPQ-------VNVSP 160 E P +D C P +G K + E+K V Sbjct: 103 PLREVPAAVHKIVDVKC--PGSGEAGKFLMENLEFLTPRDEVKFVIADRADYEFAREFLR 160 Query: 161 ENYIGFDFERFSLQPMDG--PFLEENT-------NLAISYCFQN-PKWRLSVQTHKFI 208 + + + L P P E +T L + + ++ RLS+Q HK+I Sbjct: 161 AHALDRKAGQILLSPTFSKTPTPERSTSNATLDPRLLVEWMLEDGLPARLSLQIHKYI 218 >gi|167757163|ref|ZP_02429290.1| hypothetical protein CLORAM_02713 [Clostridium ramosum DSM 1402] gi|167703338|gb|EDS17917.1| hypothetical protein CLORAM_02713 [Clostridium ramosum DSM 1402] Length = 220 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 87/232 (37%), Gaps = 44/232 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y + E F+++ GEG AG++A F RF CNL C +CDT + + Sbjct: 1 MNNYKVVEKFISINGEGSRAGQLAAFIRFHYCNL-----------NCSYCDTRYANDSNS 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 + + D ++ + LTGGEPLLQ ++ LI L K GF + +ETN Sbjct: 50 NYELLSAQNILDYLKANKVV------NVTLTGGEPLLQQNIDYLIDLLLKNGFSVEIETN 103 Query: 120 GTIEPPQGID----WICVSPKAGCDLK-----------IKGGQELKLVFPQVNVSPENYI 164 G+I+ I + K + +K V ++ + Sbjct: 104 GSIDIKPFIKETRPIFTLDYKVPSSTMENEMCLNNYQYLTKNDVVKFVVSNLSDLNKAKE 163 Query: 165 GFDF------ERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 D + P+ G + Y ++ + +Q HKFI Sbjct: 164 IIDTYDLVNRTKVYFSPVFGKIEPRM---IVDYMVKHHLNGINMQLQMHKFI 212 >gi|78048825|ref|YP_365000.1| putative radical activating enzyme [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037255|emb|CAJ25000.1| putative radical activating enzyme [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 227 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 90/234 (38%), Gaps = 54/234 (23%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + I EIFL+LQGE AG VF R +GC L +C +CDT + Sbjct: 15 LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAYAFH--- 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 G +++D + + + R+ +TGGEPL Q + L++ L G+++++ET+ Sbjct: 61 GGQWHDIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETS 114 Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVNVSPE-NYIGF------DFE 169 G ++ V P+ D+K G+E + + + + + I F D+E Sbjct: 115 GALDVSA------VDPRVSRVVDIKTPASGEEARNRWENLPLLTARDQIKFVICSRVDYE 168 Query: 170 ---------------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 P LA R +Q HK + Sbjct: 169 WSREIVAAHTLDRRCTVWFSPSKSEVSPR--QLADWIVADRLPVRFQMQLHKLL 220 >gi|148244548|ref|YP_001219242.1| organic radical activating enzyme [Candidatus Vesicomyosocius okutanii HA] gi|146326375|dbj|BAF61518.1| organic radical activating enzyme [Candidatus Vesicomyosocius okutanii HA] Length = 213 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 92/224 (41%), Gaps = 42/224 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 +I EIF ++QGE G +VF R +GC L +C +CDT++ Sbjct: 6 LNINEIFYSIQGEAREVGLPSVFIRLTGCPL-----------KCTYCDTEYAFHGN---- 50 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 N+ ++ +I E + + Y +TGGEPLLQ + L+ L + +++++ET+G+I Sbjct: 51 --NLMEIDAIISE---IKQYDTTYICVTGGEPLLQKNCYLLLDRLVENNYQVSLETSGSI 105 Query: 123 E-------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL-- 173 +D S K ++L V Q+ ++ FD+ L Sbjct: 106 NIQDVNALVSIVMDVKTPSSGESEQNKYTNFKKL-TVKDQLKFVIGSHSDFDWSVAILNQ 164 Query: 174 ---------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 P+ G T LA Q RL +Q HK + Sbjct: 165 YHTTAGVLFSPVFGNITP--TQLADWILDQQLNVRLQLQLHKLL 206 >gi|285019180|ref|YP_003376891.1| organic radical activating enzyme protein [Xanthomonas albilineans GPE PC73] gi|283474398|emb|CBA16899.1| putative organic radical activating enzyme protein [Xanthomonas albilineans] Length = 225 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 86/234 (36%), Gaps = 54/234 (23%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + + EIFL+LQGE AG VF R +GC L +C +CDT + Sbjct: 13 LPRLKLTEIFLSLQGEADSAGWPTVFVRLTGCPL-----------RCSYCDTAYAFH--- 58 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 G +++D + + + R+ +TGGEPL Q + L+Q+L G+++++ET+ Sbjct: 59 GGQWWDIDAILAEVARHGV------RHVCVTGGEPLAQKRCLQLLQSLCDTGYDVSLETS 112 Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLV------FP 154 G ++ + V P+ D+K E +K V + Sbjct: 113 GALDIAE------VDPRVSRVLDIKTPASHEAQRNRWENLTLLTARDQIKFVLCGRADYE 166 Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + P + LA R +Q HK + Sbjct: 167 WARALVAEHQLQARCMVWFSP--SKSDLDARELADWIVADRLPVRFQMQLHKLL 218 >gi|225848024|ref|YP_002728187.1| organic radical activating enzyme [Sulfurihydrogenibium azorense Az-Fu1] gi|225644046|gb|ACN99096.1| organic radical activating enzyme [Sulfurihydrogenibium azorense Az-Fu1] Length = 217 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 38/228 (16%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + + + EIF T++GEG G VF R GCNL +C +CDT + Sbjct: 8 ETFKVVEIFRTVEGEGRWVGLPVVFIRLEGCNL-----------RCSWCDTTY----SYD 52 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 G Y V L ++++E + +TGGEP L ++ L+++L + + +ETNG Sbjct: 53 GKTYTVKTLEEILKE---VSTYNLKRVCITGGEPFLTSNLDILVKSLLDEDYYVFIETNG 109 Query: 121 TIEPPQGID------WICVSPKAGCDLK----IKGGQELKLVFPQVNVSPENYIGFDF-- 168 T+ + D +I SPK I +ELK V + N+S + I DF Sbjct: 110 TLWNERFKDLNLDRLYITCSPKPPFYFVNKDLIPYIKELKFVVDE-NLSLNHIIKPDFID 168 Query: 169 ----ERFSLQPMDGP--FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + LQP +++ NL + R+ Q HK +G+ Sbjct: 169 IIKSDIIVLQPESNKPEMVKKALNLQDQLLQLGIESRIIPQCHKVLGL 216 >gi|257095755|ref|YP_003169396.1| Radical SAM domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048279|gb|ACV37467.1| Radical SAM domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 219 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 57/229 (24%), Positives = 83/229 (36%), Gaps = 50/229 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIFL+LQGE G VF R +GC L +C +CDT + G Sbjct: 10 LKISEIFLSLQGETSRVGLPTVFVRLTGCPL-----------RCVWCDTAYAFAGG---- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 L D++ E + R+ +TGGEPL Q + L+ L G+ +++ET+G + Sbjct: 55 --RTMTLPDILAE---VARHDVRHVCVTGGEPLAQPACLALLSELCDTGYAVSLETSGAL 109 Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----------------GQELKLV------FPQVNVS 159 + G+D DLK G G E+K V + Sbjct: 110 DI-GGVDQRVA---RIVDLKAPGSGESDRNLWANLSLLNSGDEIKFVLAHRADYEWARQV 165 Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 D P+ G + LA R +Q HK + Sbjct: 166 IVERRLADVCPLLFSPVAGEL--AASTLAEWILADRLPVRFQLQLHKVL 212 >gi|288559696|ref|YP_003423182.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Methanobrevibacter ruminantium M1] gi|288542406|gb|ADC46290.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Methanobrevibacter ruminantium M1] Length = 202 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 95/223 (42%), Gaps = 33/223 (14%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + EIF + QGEG + G A F R GCNL C +CDTD + Sbjct: 1 MIKIKVSEIFTSFQGEGPYIGTPATFLRLYGCNL-----------NCPWCDTDISTYE-- 47 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVET 118 +VD++ +++ Q R V+TGGEP LQ LI+ + +I +ET Sbjct: 48 ---ILSVDEVFEILMTQ--MEFNNIRILVITGGEPTLQMEELKRLIKEIPDE-IKIQIET 101 Query: 119 NGTI-EPPQGIDWICVSPKAGCDLKIKGGQELKLVF------PQVNVSPENYIGFDF--- 168 NG+I E ID++ +SPK + K + VF Q ++ Y+ + Sbjct: 102 NGSIFEYVPEIDYV-ISPKEDKETVFKNYYKYDNVFFKFVICSQEDIDEVIYLKDKYNYD 160 Query: 169 ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 + LQ E +L +LSVQTHK++ R Sbjct: 161 KTIWLQGEFSKDGEMA-DLIRENFPHLENVKLSVQTHKYLNQR 202 >gi|308273462|emb|CBX30064.1| hypothetical protein N47_D28730 [uncultured Desulfobacterium sp.] Length = 219 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 60/231 (25%), Positives = 90/231 (38%), Gaps = 48/231 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M L I EIF ++QGE ++G F R +GCNL +C +CDT + +G+ Sbjct: 6 MTLL-INEIFYSIQGESLYSGLPCAFIRLAGCNL-----------RCAYCDTKYAYNEGS 53 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 D L I E +TGGEPL+Q + P LI+ L F + +ETN Sbjct: 54 ---EIETDHLVKKISEFG------CPLVEITGGEPLIQEETPVLIEKLLDNKFSVLLETN 104 Query: 120 GTIEPP-------QGIDWICVSPKAGCDLK--------IKGGQELKLVFPQV-------N 157 G+++ + ID C P +G K + ++K V + Sbjct: 105 GSLDISYIDKRCIKIIDIKC--PTSGESEKNNLANINRLNQKDQIKFVIGNRVDYEFAKD 162 Query: 158 VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + + F E P+ E + LA R +Q HK I Sbjct: 163 IVKQIPKTFFRENILFSPIYNKL--ELSELARWMLKDKLTVRFHLQLHKII 211 >gi|84623212|ref|YP_450584.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84367152|dbj|BAE68310.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 227 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 55/234 (23%), Positives = 90/234 (38%), Gaps = 54/234 (23%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + I EIFL+LQGE AG VF R +GC L +C +CDT + Sbjct: 15 LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCVYCDTAYAFH--- 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 G +++D + + + R+ +TGGEPL Q + L+Q L G+++++ET+ Sbjct: 61 GGEWHDIDDVLAEVATHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETS 114 Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVNVSPE-NYIGF------DFE 169 G ++ V P+ D+K G+E + + + + + I F D+E Sbjct: 115 GALDVSA------VDPRVSRVVDIKTPASGEEARNRWENLLLLTARDQIKFVICSRADYE 168 Query: 170 ---------------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 P LA R +Q HK + Sbjct: 169 WSREIVAAHALDRRCTVWFSPSKSEVGPR--QLADWIVADRLPVRFQMQLHKLL 220 >gi|71275793|ref|ZP_00652077.1| Radical SAM [Xylella fastidiosa Dixon] gi|71900392|ref|ZP_00682525.1| Radical SAM [Xylella fastidiosa Ann-1] gi|170730227|ref|YP_001775660.1| radical activating enzyme [Xylella fastidiosa M12] gi|71163371|gb|EAO13089.1| Radical SAM [Xylella fastidiosa Dixon] gi|71729824|gb|EAO31922.1| Radical SAM [Xylella fastidiosa Ann-1] gi|167965020|gb|ACA12030.1| radical activating enzyme [Xylella fastidiosa M12] Length = 217 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 95/227 (41%), Gaps = 46/227 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIFL+LQGE G VF R +GC L +C++CDT + G Sbjct: 8 LKISEIFLSLQGEANSVGWPTVFVRLTGCPL-----------RCQYCDTSYAFH---GGE 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 ++D + + + + R+ +TGGEPL Q + L++ L GFE+++ET+G + Sbjct: 54 WRSIDTIVNEVRSYGV------RHVCVTGGEPLAQKRCLLLLEKLCDAGFEVSLETSGAL 107 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF-------------- 166 + +D VS D+K G E + +P + ++P + I F Sbjct: 108 DI-AAVD-SRVS--RVVDIKTPGSGEAHRNHWPNLTLLTPHDQIKFVLCSRVDYEWARTC 163 Query: 167 ----DFERFSLQPMDGPFLEEN-TNLAISYCFQNPKWRLSVQTHKFI 208 + ER + + T LA + R +Q HK + Sbjct: 164 VAEHELERRCMVWFSPSKQDIAPTVLADWIISDRLEVRFQLQLHKLL 210 >gi|289207754|ref|YP_003459820.1| radical SAM protein [Thioalkalivibrio sp. K90mix] gi|288943385|gb|ADC71084.1| Radical SAM domain protein [Thioalkalivibrio sp. K90mix] Length = 232 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 85/230 (36%), Gaps = 54/230 (23%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I E+F++LQGE +G F R +GC L +CR+CD+ + G Sbjct: 24 RITEMFVSLQGEAADSGWPTAFVRLTGCPL-----------RCRWCDSAYAF---EGGEA 69 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 +D + + + + R+ +TGGEPL Q L+ L G+ +++ET+G ++ Sbjct: 70 RALDSILAWVGQTGV------RHVCVTGGEPLAQPGCRELLARLCDDGYRVSLETSGALD 123 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQE-----------------LKLVFPQVNVSPENYIGF 166 + V D K G E LK V N + ++ Sbjct: 124 IGGLDARVTV----VMDWKAPGSGEQDRNLEANIAHLAAGDQLKFVL--ANRADFDWACA 177 Query: 167 DFERFSL--------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + R L P+ G LA + R +Q HK + Sbjct: 178 ELGRLDLAPGVEVLFSPVFGELAPR--ELADWIVAERLAVRFQLQLHKLL 225 >gi|21232445|ref|NP_638362.1| radical activating enzyme [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767472|ref|YP_242234.1| radical activating enzyme [Xanthomonas campestris pv. campestris str. 8004] gi|21114226|gb|AAM42286.1| radical activating enzyme [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572804|gb|AAY48214.1| radical activating enzyme [Xanthomonas campestris pv. campestris str. 8004] Length = 227 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 86/230 (37%), Gaps = 46/230 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + I EIFL+LQGE AG VF R +GC L +C +CDT + Sbjct: 15 LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCTYCDTAYAFH--- 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 G +++D + + + R+ +TGGEPL Q + L+ L GF++++ET+ Sbjct: 61 GGEWHDIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLALLHKLCDAGFDVSLETS 114 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQE----------LKLVFPQVNVSPENYIGFDFE 169 G ++ + D+K E L Q+ + +++ Sbjct: 115 GALDVSA----VDARVSRVVDIKTPASGEDHRNRWDNLPLLTARDQIKFVICSRADYEWS 170 Query: 170 R--FSLQPMDG---------PFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 R + Q +D LA R +Q HK + Sbjct: 171 RDVVATQALDRRCTVWFSPSKGQVSARELADWIVADRLPVRFQMQLHKIL 220 >gi|254787332|ref|YP_003074761.1| radical SAM domain-containing protein [Teredinibacter turnerae T7901] gi|237685298|gb|ACR12562.1| radical SAM domain protein [Teredinibacter turnerae T7901] Length = 214 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 88/229 (38%), Gaps = 47/229 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M I EIF +LQGE G VF R +GC L +C++CD+++ G Sbjct: 1 MTDLRITEIFHSLQGEARTVGVPTVFVRLTGCPL-----------RCQYCDSEYAFFGGE 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119 K ++D++ L+ + +TGGEPL Q + +PL++ L G +++ET+ Sbjct: 50 KK---SLDEIEALVI------GFRCSHVCVTGGEPLAQPNCIPLLERLCDAGLAVSLETS 100 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF----------PQVNVSPENYIGFDFE 169 G ++ + + DLK E Q+ + +++ Sbjct: 101 GAMDISAVDTRVSI----VLDLKTPDSGERDKNLLSNIPLLAAKDQIKFVICSRSDYEWA 156 Query: 170 RFSLQPM-------DGPFLEENTNLA----ISYCF-QNPKWRLSVQTHK 206 RF L D F T LA + R +Q HK Sbjct: 157 RFMLDEQQLVGRVGDIFFSPSYTQLAPAELAQWILDDRLPVRFQMQLHK 205 >gi|219850957|ref|YP_002465389.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c] gi|219545216|gb|ACL15666.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c] Length = 202 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 93/226 (41%), Gaps = 44/226 (19%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIFL+LQGEG + G+ +F R SGCNL C +CDT + T G Sbjct: 2 KISEIFLSLQGEGVYQGKACIFIRLSGCNL-----------SCSWCDTRYA---CTLGEE 47 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGE--PLLQVDVPLIQALNKRGFEIAVETNGTI 122 +Q+ + + E+ +TGGE +PL++AL RG+ + +ETNGTI Sbjct: 48 MTTEQVLERVSEE------NCSLICITGGEPLLQQDQLLPLLKALEDRGYIVGIETNGTI 101 Query: 123 E-------PPQGIDWICVSPKAGCDL----KIKGGQELKLVFPQVNVSPENYIGFDFERF 171 + +D C S DL I+ +K V V + + Sbjct: 102 DFIASGEYASICMDVKCPSSGETSDLSLLEHIRVTDSVKFV-----VKDQQDCAYAESVI 156 Query: 172 SLQPMDGP------FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 P+ G F E T LA ++ +Q HK IG++ Sbjct: 157 RDHPIKGTIFFSPVFGSEYTALASFVLTRHLPVTFQMQLHKIIGVK 202 >gi|197122965|ref|YP_002134916.1| radical SAM protein [Anaeromyxobacter sp. K] gi|196172814|gb|ACG73787.1| Radical SAM domain protein [Anaeromyxobacter sp. K] Length = 210 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 99/228 (43%), Gaps = 51/228 (22%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF ++QGEG AGR VF RF+GC+L +C +CDT + G R Sbjct: 2 RVTEIFFSIQGEGSRAGRPCVFVRFTGCDL-----------RCGYCDTAYAFHGGADMDR 50 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 A ++ E R+ LTGGEP+LQ ++P L + L RG+E+AVET+G Sbjct: 51 ------AAILAE---VARHPARFVCLTGGEPMLQRELPDLARDLVARGYEVAVETHGQRP 101 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENYIGF------DFE------- 169 +D + D+K G E+ F ++ + P + + F DF Sbjct: 102 ----LDALPAEAIRVVDVKTPGSGEVTTDFAYLDRLQPHDEVKFVVCSEDDFRWSREVVR 157 Query: 170 --------RFSLQPMDGPFLEENTNLAISYCFQN-PKWRLSVQTHKFI 208 + L P G + + + ++ RLS+Q HK I Sbjct: 158 RHALEGRVQVLLSPAWGQVAPRDL---VRWMLESGLDARLSLQVHKVI 202 >gi|148359615|ref|YP_001250822.1| radical activating enzyme [Legionella pneumophila str. Corby] gi|296107657|ref|YP_003619358.1| Organic radical activating enzyme [Legionella pneumophila 2300/99 Alcoy] gi|148281388|gb|ABQ55476.1| radical activating enzyme [Legionella pneumophila str. Corby] gi|295649559|gb|ADG25406.1| Organic radical activating enzyme [Legionella pneumophila 2300/99 Alcoy] Length = 217 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 55/234 (23%), Positives = 90/234 (38%), Gaps = 50/234 (21%) Query: 1 MKLY----SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG 56 MK + I EIF +LQGE G VF R +GC L +C++CDT + Sbjct: 1 MKRFNEQLRITEIFHSLQGESVTVGLPTVFVRLTGCPL-----------RCQYCDTAYAF 49 Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIA 115 + G +D + + + + ++ +TGGEPL Q +PL+ L G+ ++ Sbjct: 50 ---SGGEVVEIDDILNKV------ASYQCQHVCVTGGEPLAQPGCIPLLSKLCDAGYSVS 100 Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF------- 166 +ET+G + +D + DLK +E K + ++ + P + I F Sbjct: 101 LETSGARDI-ASVDQRVM---IVMDLKTPDSREADKNLLSNLSFLKPTDQIKFVLCSRND 156 Query: 167 ------------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 ER L +LA R +Q HK + Sbjct: 157 YEWACSMLSEYQLAERVQLLFSPSWNQLNPADLANWIIQDKLPVRFQLQLHKIL 210 >gi|297539673|ref|YP_003675442.1| Radical SAM domain-containing protein [Methylotenera sp. 301] gi|297259020|gb|ADI30865.1| Radical SAM domain protein [Methylotenera sp. 301] Length = 212 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 56/232 (24%), Positives = 92/232 (39%), Gaps = 51/232 (21%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MKL + EIF ++QGE G VF R +GC + +C +CDT + G+ Sbjct: 1 MKL-KVHEIFYSIQGESSRVGLPTVFVRLTGCPM-----------RCVYCDTAYAFSGGS 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 ++AD++ + E +Y +TGGEPL Q D L++ L G+ +++ET Sbjct: 49 N------IEIADILAK---VAEFGTKYVTVTGGEPLAQKDCHFLLKDLCDAGYSVSLETG 99 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELK-LVFPQVN-VSPENYIGF----------- 166 G I+ + V D+K ELK V+ ++ + + + F Sbjct: 100 GAIDISPVDKRVSV----ILDVKTPDSGELKNNVWSNLDHLKSSDEVKFVLCSREDYQWA 155 Query: 167 ----------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + P+ T+LA R+ VQ HK + Sbjct: 156 RDLLSTHKIAEKCPVLFSPVYSQVSP--TDLAEWVLADKLPVRMQVQLHKIL 205 >gi|145641210|ref|ZP_01796790.1| predicted methyltransferase [Haemophilus influenzae R3021] gi|145274047|gb|EDK13913.1| predicted methyltransferase [Haemophilus influenzae 22.4-21] Length = 181 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 90/203 (44%), Gaps = 35/203 (17%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +VF RF CNL C +CDT + + R++V Q+ + + Sbjct: 1 MPSVFVRFGKCNL-----------DCPWCDTPYNNFK-----RWSVSQILEKV------W 38 Query: 82 EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140 + ++TGGEP + + L++ G+ +A+ETNG P ID+I SPK+ Sbjct: 39 SFSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLKAIPAQIDYIATSPKSLYA 98 Query: 141 LK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP--MDGP--FLEENTNL-A 188 K I E+++V S I + + L P +DG LE T L Sbjct: 99 HKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSPCEIDGKMNLLETITLLGQ 158 Query: 189 ISYCFQNPKWRLSVQTHKFIGIR 211 ++ PKW+LS+QTHK IGI Sbjct: 159 LNQRSNKPKWQLSLQTHKLIGIE 181 >gi|225850855|ref|YP_002731089.1| radical SAM domain protein [Persephonella marina EX-H1] gi|225645393|gb|ACO03579.1| radical SAM domain protein [Persephonella marina EX-H1] Length = 214 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 96/231 (41%), Gaps = 39/231 (16%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M+ +++ EIF +++GEG G F R GCNL +C +CDT + G Sbjct: 1 MEKFNVVEIFPSIEGEGSLIGYPVTFIRLEGCNL-----------RCEWCDTPYS-YDGK 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 + D++ ++ R LTGGEPL+ +V L+ + K G+ + +ETN Sbjct: 49 TFSKLTSDEIISELKR------YPNRKVCLTGGEPLICENVDKLMTEIIKEGYSLIIETN 102 Query: 120 GTIEPPQGID---------WICVSPKAGC-----DLKIKGGQELKLVFPQVNVSPEN--- 162 GT+ + + +I VSPK I E K + + + Sbjct: 103 GTVLTEEVKNVLREFGESIYIVVSPKPDSFYFINKELIPSVDEFKFIVDETLRIKDILMY 162 Query: 163 YIGFDFERFSLQPMDG--PFLEENTNLAISYCFQNP-KWRLSVQTHKFIGI 210 I + + LQP +++ L ++ + R+ Q HK++GI Sbjct: 163 QIYYTEKPLILQPESNRKDMIDKALKLQRELLEKHSIEARVIPQVHKYMGI 213 >gi|237735749|ref|ZP_04566230.1| radical SAM-superfamily protein [Mollicutes bacterium D7] gi|229381494|gb|EEO31585.1| radical SAM-superfamily protein [Coprobacillus sp. D7] Length = 220 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 87/232 (37%), Gaps = 44/232 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y + E F+++ GEG AG++A F RF CNL C +CDT + + Sbjct: 1 MNNYKVVEKFISINGEGSRAGQLAAFIRFHYCNL-----------NCSYCDTRYANDSNS 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 + + D ++ + LTGGEPLLQ ++ LI L K GF + +ETN Sbjct: 50 NYELLSAQNILDYLKTNKVV------NVTLTGGEPLLQQNIDYLIDLLLKNGFSVEIETN 103 Query: 120 GTIEPPQGID----WICVSPKAGCDLK-----------IKGGQELKLVFPQVNVSPENYI 164 G+I+ I + K + +K V ++ + Sbjct: 104 GSIDIKPFIKETRPIFTLDYKVPSSTMENEMCLNNYQYLTKNDVVKFVVSNLSDLNKAKE 163 Query: 165 GFDF------ERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 D + P+ G + Y ++ + +Q HKFI Sbjct: 164 IIDTYDLVNRTKVYFSPVFGKIEPRM---IVDYMVKHHLNGINMQLQMHKFI 212 >gi|118443804|ref|YP_878458.1| MoaA family Fe-S oxidoreductase [Clostridium novyi NT] gi|118134260|gb|ABK61304.1| Fe-S oxidoreductase of MoaA family CAC3625 [Clostridium novyi NT] Length = 222 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 55/232 (23%), Positives = 87/232 (37%), Gaps = 47/232 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + E F+++ GEG +G+++VF RF+GCNL C +CDT + + Sbjct: 3 YKVVEKFISINGEGKSSGQLSVFIRFAGCNL-----------NCSYCDTKWANEEKAPYS 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALN-KRGFEIAVETNGT 121 ++ + I+ E + LTGGEPLLQ + L++ L I +ETNG+ Sbjct: 52 IMTEKEIYEYIK------LTEIKNVTLTGGEPLLQEGILTLLKLLCSDENLNIEIETNGS 105 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGG-----------------QELKLVFPQVNVSPE--- 161 I PK D K+ +K V N + Sbjct: 106 IPLKDFTSIKNNPPKFTMDYKLPYSNMENHMITDNFNYLTKKDVIKFVVANKNDLQKLKS 165 Query: 162 ---NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 Y D + P+ G + + + +N L +Q HK I Sbjct: 166 IIYKYNLIDKTNIYISPVYGEIEMNS---IVEFMKENKLNGVTLQMQLHKII 214 >gi|254282112|ref|ZP_04957080.1| radical SAM domain protein [gamma proteobacterium NOR51-B] gi|219678315|gb|EED34664.1| radical SAM domain protein [gamma proteobacterium NOR51-B] Length = 217 Score = 150 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 55/232 (23%), Positives = 87/232 (37%), Gaps = 51/232 (21%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 I EIF +LQGE G VF R +GC L +C +CDT + + Sbjct: 5 TTLRITEIFHSLQGEARTVGLPTVFVRLTGCPL-----------RCVYCDTAYAF---SG 50 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 G +D + + + +TGGEPL Q + + L+ AL RG+++++ET+G Sbjct: 51 GELTTLDDILERV------AGFSCTRVCVTGGEPLAQPECLSLLTALCDRGYDVSLETSG 104 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQV-NVSPENYIGF--------DFER 170 + + DLK E + + + ++P + I F ++ R Sbjct: 105 AMPIAGADTRVS----RVLDLKTPDSGECHRNDWSNIEQLTPHDQIKFVVCSRTDYEWAR 160 Query: 171 FSL--------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 F L P G LA RL +Q HK + Sbjct: 161 FKLDEFKLPTRVSDVLFSPSYGVVEPA--ELAQWLLDDRLAARLQLQLHKLL 210 >gi|302035630|ref|YP_003795952.1| putative radical-activating enzyme, radical SAM superfamily [Candidatus Nitrospira defluvii] gi|300603694|emb|CBK40025.1| putative Radical-activating enzyme, radical SAM superfamily [Candidatus Nitrospira defluvii] Length = 212 Score = 150 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 83/227 (36%), Gaps = 44/227 (19%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + EIF ++QGE +AGR VF R +GC L +C +CDT + G Sbjct: 1 MVKVTEIFHSIQGESTYAGRPCVFVRLTGCPL-----------RCTWCDTAYAFY---GG 46 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGT 121 +D + + + +TGGEPL Q +PL+ L GFE+ VET+G Sbjct: 47 RDLTIDDIVNQVRA------FSCDLVEVTGGEPLSQPASLPLLTRLCDEGFEVLVETSGA 100 Query: 122 IEPPQGID---WICVSPKAGCDLKIKGG-----------QELKLV------FPQVNVSPE 161 IE G+D + + K E+K V + Sbjct: 101 IE-TIGVDRRVHVILDVKCPGSGMTDRMCWSNLDRLAPQDEVKFVIKDRVDYEWAREVLH 159 Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + + P+ G LA R +Q HKFI Sbjct: 160 RHELPGRCTVLMSPVFGEVEVRY--LAEWILADKLPVRFQLQMHKFI 204 >gi|188996510|ref|YP_001930761.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931577|gb|ACD66207.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 220 Score = 150 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 36/227 (15%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + + + EIF +++GEG G VF R GCNL +C +CDT + Sbjct: 11 ETFKVVEIFRSVEGEGRWVGLPVVFIRLEGCNL-----------RCSWCDTPYSYT---- 55 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 G + + ++D++EE + + +TGGEP ++ L+ L + +++ +ETNG Sbjct: 56 GENFKLLSISDILEE---IKKYNLKRVCITGGEPFFTENLDILVGNLIENNYQVFIETNG 112 Query: 121 TIE--PPQGID----WICVSPKAG----CDLKIKGGQELKLVFPQV-----NVSPENYIG 165 T+ + +D +I SPK + E K V + + P+ Sbjct: 113 TLWNQNFENLDKSKIYITCSPKPPFYFINKNLLPYISEFKFVVDETLDVKHIIRPDLTEY 172 Query: 166 FDFERFSLQPMDGP--FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + LQP + + L + R+ Q HK +G+ Sbjct: 173 IKNDVIVLQPESNKPEMVNKALKLQDELLKFGIESRIIPQCHKVLGL 219 >gi|148652703|ref|YP_001279796.1| radical SAM domain-containing protein [Psychrobacter sp. PRwf-1] gi|148571787|gb|ABQ93846.1| Radical SAM domain protein [Psychrobacter sp. PRwf-1] Length = 245 Score = 150 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 60/240 (25%), Positives = 90/240 (37%), Gaps = 57/240 (23%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + EIF +LQGE AG VF R +GC L +C +CDT + T G Sbjct: 21 LRMTEIFYSLQGEALTAGLPTVFVRLTGCPL-----------RCVYCDTTYSF---TGGE 66 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R +++ + I + + LTGGEPL Q + +PL+Q L G+EI++ET G + Sbjct: 67 RLSLEAIMADIAQ------YPCKRICLTGGEPLAQPNAIPLMQRLLDEGYEISLETAGAL 120 Query: 123 ---EPPQGI----DWICVSPKAGCD------LKIKGGQELKLVFPQVNVSPENYIGFDFE 169 + P + D S + +LK V +N S ++ Sbjct: 121 SVADVPAAVSKVMDIKTPSSGESDKNLWSNLEYLTQHDQLKFVI--MNRSDYDWSKQKLA 178 Query: 170 RFSL---------QPMDGPFLEE------------NTNLAISYCFQNPKWRLSVQTHKFI 208 ++L PM + LA RL +Q HK I Sbjct: 179 EYNLDKVVGTVWFSPMFNVHDDAQGDVAAVDVPNLARELAEWILADALPVRLQLQLHKII 238 >gi|21243865|ref|NP_643447.1| radical activating enzyme [Xanthomonas axonopodis pv. citri str. 306] gi|21109466|gb|AAM37983.1| radical activating enzyme [Xanthomonas axonopodis pv. citri str. 306] Length = 227 Score = 150 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 88/232 (37%), Gaps = 50/232 (21%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + I EIFL+LQGE AG VF R +GC L +C +CDT + Sbjct: 15 LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCHYCDTAYAFH--- 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 G +++D + + + R+ +TGGEPL Q + L+Q L GF++++ET+ Sbjct: 61 GGQWHDIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGFDVSLETS 114 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIK-GGQELKLVFPQVNVSPE-NYIGF------DFE-- 169 G ++ + D+K G+E + + + + + I F D+E Sbjct: 115 GALDVSAVDSRVS----RVVDIKTPASGEEARNRWENLPLLTARDQIKFVICSRADYEWS 170 Query: 170 -------------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 P LA R +Q HK + Sbjct: 171 REIVAAHALDRRCTVWFSPSKSEVSPR--QLADWIVADRLPVRFQMQLHKLL 220 >gi|325914192|ref|ZP_08176545.1| organic radical activating enzyme [Xanthomonas vesicatoria ATCC 35937] gi|325539695|gb|EGD11338.1| organic radical activating enzyme [Xanthomonas vesicatoria ATCC 35937] Length = 227 Score = 150 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 55/232 (23%), Positives = 90/232 (38%), Gaps = 50/232 (21%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + I EIFL+LQGE AG VF R +GC L +C +CDT + Sbjct: 15 LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCNYCDTAYAFH--- 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 G +++D + + + R+ +TGGEPL Q + L+Q L GF++++ET+ Sbjct: 61 GGQWHDIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGFDVSLETS 114 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIK-GGQELKLVFPQVNVSPE-NYIGF------DFE-- 169 G ++ + + D+K G+E + + + + + I F D+E Sbjct: 115 GALDVSEVDTRVS----RVVDIKTPASGEEQRNRWDNLALLTARDQIKFVICSRADYEWS 170 Query: 170 -------------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 P G LA R +Q HK + Sbjct: 171 RGIVAAHALERRCTVWFSPSKGEVPPR--QLADWIVSDRLPVRFQMQLHKIL 220 >gi|70607340|ref|YP_256210.1| hypothetical protein Saci_1604 [Sulfolobus acidocaldarius DSM 639] gi|68567988|gb|AAY80917.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639] Length = 211 Score = 150 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 97/231 (41%), Gaps = 40/231 (17%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK Y I EIF ++QGEG G + F R +GC++ +C +CDT + + Sbjct: 1 MK-YWIIEIFTSIQGEGEVIGTPSNFVRLAGCHM-----------RCIWCDTKYSWHK-Y 47 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 G ++ ++ I + +TGGEPLLQ +PL + L K I VET+G Sbjct: 48 DGKELSIQEIISKIN-------VSVKTTTITGGEPLLQDIIPLAEELKKLEQRIVVETSG 100 Query: 121 TIEPPQG----IDWICVSPK---AGCDLKIKGGQEL-----KLVFPQVNVSPENYIGF-- 166 TI+P Q +D VSPK AG LK + K V I F Sbjct: 101 TIKPNQKLMELVDVFSVSPKLSNAGYRLKYNFKDDDWATYYKFVIVNPKTDIPEVIKFVE 160 Query: 167 ----DFERFSLQP--MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 D + LQP ++ LA S ++R+ Q H+ I R Sbjct: 161 ENRIDHRKVLLQPDGRRNDYVNALKELADSVMEFGVQFRVLPQLHRIISYR 211 >gi|52842258|ref|YP_096057.1| radical activating enzyme [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629369|gb|AAU28110.1| radical activating enzyme [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 217 Score = 150 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 90/234 (38%), Gaps = 50/234 (21%) Query: 1 MKLY----SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG 56 MK + I EIF +LQGE G VF R +GC L +C++CDT + Sbjct: 1 MKRFNEQLRITEIFHSLQGESVTVGLPTVFVRLTGCPL-----------RCQYCDTAYAF 49 Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIA 115 + G +D + + + + ++ +TGGEPL Q + L+ L G+ ++ Sbjct: 50 ---SGGEVVEIDDILNKV------ASYQCQHVCVTGGEPLAQPGCILLLSKLCDAGYSVS 100 Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF------- 166 +ET+G + +D + DLK +E K + ++ + P + I F Sbjct: 101 LETSGARDI-ASVDQRVM---IVMDLKTPDSREADKNLLSNLSFLKPTDQIKFVLCSRTD 156 Query: 167 ------------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 ER L TNLA R +Q HK + Sbjct: 157 YEWACSMLSEYQLAERVQLLFSPSWNQLNPTNLANWIIQDKLPVRFQLQLHKIL 210 >gi|58581294|ref|YP_200310.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425888|gb|AAW74925.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae KACC10331] Length = 210 Score = 150 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 89/230 (38%), Gaps = 54/230 (23%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIFL+LQGE AG VF R +GC L +C +CDT + G Sbjct: 2 KITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCVYCDTAYAFH---GGEW 47 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123 +++D + + + R+ +TGGEPL Q + L+Q L G+++++ET+G ++ Sbjct: 48 HDIDDVLAEVATHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETSGALD 101 Query: 124 PPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVNVSPE-NYIGF------DFE---- 169 V P+ D+K G+E + + + + + I F D+E Sbjct: 102 VSA------VDPRVSRVVDIKTPASGEEARNRWENLLLLTARDQIKFVICSRADYEWSRE 155 Query: 170 -----------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 P LA R +Q HK + Sbjct: 156 IVAAHALDRRCTVWFSPSKSEVGPR--QLADWIVADRLPVRFQMQLHKLL 203 >gi|28198799|ref|NP_779113.1| radical activating enzyme [Xylella fastidiosa Temecula1] gi|182681498|ref|YP_001829658.1| radical SAM domain-containing protein [Xylella fastidiosa M23] gi|28056890|gb|AAO28762.1| radical activating enzyme [Xylella fastidiosa Temecula1] gi|182631608|gb|ACB92384.1| Radical SAM domain protein [Xylella fastidiosa M23] gi|307579952|gb|ADN63921.1| radical SAM domain-containing protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 217 Score = 150 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 46/227 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIFL+LQGE G VF R +GC L +C++CDT + G Sbjct: 8 LKISEIFLSLQGEANSVGWPTVFVRLTGCPL-----------RCQYCDTSYAFH---GGE 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 ++D + + + + R+ +TGGEPL Q + L++ L GFE+++ET+G + Sbjct: 54 WRSIDTIVNEVRSYGV------RHVCVTGGEPLAQKRCLLLLEKLCDAGFEVSLETSGAL 107 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF-------------- 166 + +D VS D+K G E + +P + ++P + I F Sbjct: 108 DI-AAVD-SRVS--RVVDIKTPGSGEAHRNHWPNLTLLTPNDQIKFVLCSRVDYEWARTC 163 Query: 167 ----DFERFSLQPMDGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFI 208 + ER + + L + R +Q HK + Sbjct: 164 VAEHELERRCMVWFSPSKQDIAPTLLADWIISDRLGVRFQLQLHKLL 210 >gi|257463610|ref|ZP_05628001.1| radical SAM domain-containing protein [Fusobacterium sp. D12] gi|317061164|ref|ZP_07925649.1| radical SAM domain-containing protein [Fusobacterium sp. D12] gi|313686840|gb|EFS23675.1| radical SAM domain-containing protein [Fusobacterium sp. D12] Length = 222 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 100/235 (42%), Gaps = 48/235 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y + E+F ++ GEG AG++A+F RF CNL C +CDT + + + Sbjct: 1 MPKYKVVEMFESINGEGKKAGQLALFIRFQFCNL-----------NCSYCDTKWANTKKS 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVET 118 +++++ + ++ I + LTGGEPLLQ + L++A ++ FE+ +ET Sbjct: 50 PFTWMSLEEILETARQRGI------KNITLTGGEPLLQSHIFALLEAFSKEKMFEVEIET 103 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQ--ELKLVFPQVNVSPENYIGF------DFER 170 NG+I + I P D K+ E + +VS ++ + F D ER Sbjct: 104 NGSIPL-KKFQSIENPPSFTLDYKLPQSNMEEYMCLENFSSVSAKDTVKFVVSDLQDLER 162 Query: 171 ---------------FSLQPMDGPFLEENTNLAISYCFQ-NPK-WRLSVQTHKFI 208 L P+ G + + + + + +Q HKFI Sbjct: 163 AREIMNQYSLIGKCSLYLSPVFGKIP---LPTIVDFMKKYHLNGVNMQLQMHKFI 214 >gi|54294940|ref|YP_127355.1| hypothetical protein lpl2019 [Legionella pneumophila str. Lens] gi|53754772|emb|CAH16259.1| hypothetical protein lpl2019 [Legionella pneumophila str. Lens] Length = 217 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 92/234 (39%), Gaps = 50/234 (21%) Query: 1 MKLY----SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG 56 MK + I EIF +LQGE G + VF R +GC L +C++CDT + Sbjct: 1 MKRFNEQLRITEIFHSLQGESVTVGLLTVFVRLTGCPL-----------RCQYCDTAYAF 49 Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIA 115 + G +D + + + + ++ +TGGEPL Q +PL+ L G+ ++ Sbjct: 50 ---SGGEVVEIDDILNKV------ASYQCQHVCVTGGEPLAQPGCIPLLSKLCDAGYSVS 100 Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF------- 166 +ET+G + +D + DLK +E K + ++ + P + I F Sbjct: 101 LETSGARDI-ASVDQRVM---IVMDLKTPDSREADKNLLSNLSFLKPTDQIKFVLCSRTD 156 Query: 167 ------------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 ER L T+LA R +Q HK + Sbjct: 157 YEWACSMLSEYQLAERVQLLFSPSWNQLNPTDLANWIIQDKLPVRFQLQLHKIL 210 >gi|261417330|ref|YP_003251013.1| Radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373786|gb|ACX76531.1| Radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325710|gb|ADL24911.1| radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 224 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 58/231 (25%), Positives = 91/231 (39%), Gaps = 45/231 (19%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF +++GEG G+ AVF R GCNL +C +CD+ + ++G + Sbjct: 2 KVCEIFKSIEGEGIRMGQAAVFVRLHGCNL-----------RCSYCDSMYA-VEGPDFKQ 49 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 +V ++ +E E + LTGGEPL+ V L+ A + GFE+ +ETNGT+ Sbjct: 50 MSVGEVLAAVE--MYRNESGVKCVTLTGGEPLIHEGVGELLTAFSDAGFEVNIETNGTVP 107 Query: 124 -------PPQGIDWICVSPKAGCDLKIKGG------QELKLVFPQVNVSPENY------- 163 +DW C S +K++ LK V V E Sbjct: 108 CKWQLPGLFYTMDWKCKSSGMSARMKMENIISLGKNDVLKFVVGSVEDLQEAEGVVARLS 167 Query: 164 --IGFDFERFSLQPMDGPFLEENTNLAISY-----CFQNPKWRLSVQTHKF 207 + + P+ G E +++ R VQ HK Sbjct: 168 LTSPDNMPHIFISPVWG---ELTNEQIVNWMVGSKVMTQNNARFQVQLHKI 215 >gi|168182488|ref|ZP_02617152.1| radical SAM domain protein [Clostridium botulinum Bf] gi|237794898|ref|YP_002862450.1| radical SAM domain-containing protein [Clostridium botulinum Ba4 str. 657] gi|182674381|gb|EDT86342.1| radical SAM domain protein [Clostridium botulinum Bf] gi|229261475|gb|ACQ52508.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657] Length = 221 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 57/232 (24%), Positives = 99/232 (42%), Gaps = 48/232 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + E F+++ GEG +G++A+F RF+GCNL C +CDT + + Sbjct: 3 FKVVERFVSINGEGRRSGQLAIFIRFAGCNL-----------NCSYCDTLWANEKDVSYE 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVETNGT 121 + + D I+ Q I + LTGGEPL+Q + L++ L + + +ETNG+ Sbjct: 52 LISSKDIYDYIKSQKI------KNVTLTGGEPLMQKGIVELLKLLSKDKELYVEIETNGS 105 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQ-ELKLVFPQ-VNVSPENYIGF------DFER--- 170 + + +D I SP+ D K+ E K+ ++ ++ + F D E+ Sbjct: 106 VLLDEFLD-IENSPRFTMDYKLPSSNMENKMALDNFRYLTNKDTVKFVSGSIEDLEKAKE 164 Query: 171 ------------FSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 + P+ G N + + + N L VQ HK I Sbjct: 165 IIKKYNLANTTNVYISPVFGKI---NLDTIVEFMKNNKMNGVNLQVQLHKII 213 >gi|257454238|ref|ZP_05619508.1| radical SAM domain protein [Enhydrobacter aerosaccus SK60] gi|257448411|gb|EEV23384.1| radical SAM domain protein [Enhydrobacter aerosaccus SK60] Length = 240 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 85/236 (36%), Gaps = 55/236 (23%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + EIF +LQGE AG +F R +GC L +C +CDT++ + G Sbjct: 22 LKVTEIFYSLQGEALSAGLPTIFIRLTGCPL-----------RCVYCDTEYAFV---GGE 67 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R ++ + + + LTGGEPL Q + + L+ L G+EI++ET+G + Sbjct: 68 RMSLAGILA------VCQSFPCQRICLTGGEPLAQPNAIALMNLLLAHGYEISLETSGAL 121 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQE-----------------LKLVFPQVN-------V 158 + + D+K QE +K V + + Sbjct: 122 SVAEVPTAVS----KVMDIKTPSSQEADKNLWQNIPYLTAHDQIKFVIMNRDDYDWSKQI 177 Query: 159 SPENYIGFDFERFSLQPMDGPFLEE------NTNLAISYCFQNPKWRLSVQTHKFI 208 + + PM + T+LA R +Q HK I Sbjct: 178 LADYQLDKKVATVWFSPMFNVEERQANVPTLATDLAEWILADALPVRFQLQLHKII 233 >gi|187779781|ref|ZP_02996254.1| hypothetical protein CLOSPO_03377 [Clostridium sporogenes ATCC 15579] gi|187773406|gb|EDU37208.1| hypothetical protein CLOSPO_03377 [Clostridium sporogenes ATCC 15579] Length = 226 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 56/232 (24%), Positives = 98/232 (42%), Gaps = 48/232 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + E F+++ GEG +G++A+F RF+GCNL C +CDT + + Sbjct: 8 FKVVERFVSINGEGRRSGQLAIFIRFAGCNL-----------NCSYCDTLWANEKDVSYQ 56 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVETNGT 121 + + D I+ Q I + LTGGEPL+Q + L++ L + + +ETNG+ Sbjct: 57 LISSKDIYDYIKSQKI------KNVTLTGGEPLMQKGIVELLKVLSKDKELYVEIETNGS 110 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQ-ELKLVFPQ-VNVSPENYIGF------DFER--- 170 + + +D I SP D K+ E K+ ++ ++ + F D E+ Sbjct: 111 VLLDEFLD-IENSPSFTMDYKLPSSNMENKMALDNFRYLTNKDTVKFVSGSIEDLEKAKE 169 Query: 171 ------------FSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 + P+ G N + + + N L +Q HK I Sbjct: 170 IIKKYNLVNTTNIYISPVFGKI---NLDTIVEFMKNNKMNGVNLQLQLHKII 218 >gi|198282218|ref|YP_002218539.1| Radical SAM domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667706|ref|YP_002424583.1| radical SAM domain protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246739|gb|ACH82332.1| Radical SAM domain protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519919|gb|ACK80505.1| radical SAM domain protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 214 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 86/229 (37%), Gaps = 50/229 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE GR A F R +GC L +CR+CDT + G Sbjct: 5 LRITEIFHSLQGETRSVGRPATFVRLTGCPL-----------RCRYCDTAYAFHGGEW-- 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 ++ +++E+ G R V+TGGEPL Q D +PL+ L G E+ +ET+G + Sbjct: 52 ----RRIPEILEQVRAGG---NRLVVVTGGEPLAQADVLPLMTQLCDAGHEVFLETSGAL 104 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQE-----------------LKLV------FPQVNVS 159 G+D V DLK E +K V + Sbjct: 105 SL-AGVDTRVV---KVLDLKSPDSGECERNLWENLPLLNPQDQIKFVLCSRADYDWAKEV 160 Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + P G + LA + RL +Q HK I Sbjct: 161 LAREALAERCEILFSPSHGTLALRD--LAEWMLADHLPVRLQIQLHKLI 207 >gi|220917757|ref|YP_002493061.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955611|gb|ACL65995.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 210 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 97/228 (42%), Gaps = 55/228 (24%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF ++QGEG AGR VF RF+GC+L +C +CDT + G R Sbjct: 2 RVTEIFFSIQGEGSRAGRPCVFVRFTGCDL-----------RCGYCDTAYAFHGGADMDR 50 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 A ++ E R+ LTGGEP+LQ ++P L + L RG+E+AVET+G Sbjct: 51 ------AAILAE---VARHPARFVCLTGGEPMLQRELPDLARELLARGYEVAVETHGQRP 101 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENYIGF-----DFERFSLQPMD 177 +D + D+K G E+ ++ + P + + F D R+S + + Sbjct: 102 ----LDALPAEAIRVVDVKTPGSGEVATDLAYLDRLQPHDEVKFVVCSEDDFRWSREVVR 157 Query: 178 GPFLEENTNLAISYCFQNPKW-------------------RLSVQTHK 206 LE +P W RLS+Q HK Sbjct: 158 RHALEGRVQ-----VLFSPAWGQVAPRDLVRWMLESGLDARLSLQVHK 200 >gi|51948881|gb|AAU14361.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] Length = 129 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 29/150 (19%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT-- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 V L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 ----VQTLDDIMGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL 149 ++ V P+ DLK G +E+ Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEV 127 >gi|262375547|ref|ZP_06068780.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Acinetobacter lwoffii SH145] gi|262309801|gb|EEY90931.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Acinetobacter lwoffii SH145] Length = 236 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 92/240 (38%), Gaps = 63/240 (26%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE AG VF R +GC L +C +CDT + G Sbjct: 18 LRITEIFYSLQGEANAAGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R ++D + T + + Y +TGGEPL Q + +PL+Q L G E+++ET+G + Sbjct: 64 RQSLDDIIQ------TTLDFKTPYVCVTGGEPLAQPNALPLMQRLADLGCEVSLETSGAL 117 Query: 123 EPPQGIDWICVSPKAG--CDLKIKGGQEL-----------------KLVFPQVNVSPENY 163 + + V P+ DLK E+ K V N + Sbjct: 118 DVSK------VDPRISKVLDLKTPTSGEVARNLLSNLDHLTAHDQIKFVIC--NREDYEW 169 Query: 164 IGFDFERFSLQP------MDGPFLEENTNLAI--------SYCFQ-NPKWRLSVQTHKFI 208 E++ LQ F E + + + + + R +Q HK + Sbjct: 170 SKQQLEQYQLQDKVSTVWFSPAFSVEKGAVCLPPLARDLAQWILEDHLPVRFQLQLHKLL 229 >gi|149173902|ref|ZP_01852531.1| hypothetical protein PM8797T_05675 [Planctomyces maris DSM 8797] gi|148847432|gb|EDL61766.1| hypothetical protein PM8797T_05675 [Planctomyces maris DSM 8797] Length = 226 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 27/196 (13%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF + QGEG G ++F R SGCNL +C FCDT + +G + Sbjct: 3 ISEIFHSPQGEGKWIGVPSIFIRTSGCNL-----------RCWFCDTPYTSW-NPEGEKM 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEP 124 +VDQ+ + I + + + V+TGGEP+L L Q L+ G I +ET GTI Sbjct: 51 SVDQILEHIAQ------YDCEHVVVTGGEPMLSHEIESLTQRLHADGKIITIETAGTILS 104 Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF---L 181 D + +SPK + + + + + + + E P F Sbjct: 105 DVHADLMSISPKLSNSIPVDNPE-----WAHRHDARRDQPTVIHELIKRHPYQIKFVVDR 159 Query: 182 EENTNLAISYCFQNPK 197 E+ Y + P+ Sbjct: 160 REDIAEIEDYLIRYPE 175 >gi|51948739|gb|AAU14290.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948741|gb|AAU14291.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948743|gb|AAU14292.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948745|gb|AAU14293.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948747|gb|AAU14294.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948749|gb|AAU14295.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948751|gb|AAU14296.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948753|gb|AAU14297.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948755|gb|AAU14298.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948757|gb|AAU14299.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948759|gb|AAU14300.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948761|gb|AAU14301.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948769|gb|AAU14305.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948773|gb|AAU14307.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948775|gb|AAU14308.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948791|gb|AAU14316.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948831|gb|AAU14336.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948833|gb|AAU14337.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948839|gb|AAU14340.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948845|gb|AAU14343.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948847|gb|AAU14344.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948851|gb|AAU14346.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948853|gb|AAU14347.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948855|gb|AAU14348.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948871|gb|AAU14356.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948875|gb|AAU14358.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948883|gb|AAU14362.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] Length = 129 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 29/150 (19%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT-- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 ----IQTLDDIMGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL 149 ++ V P+ DLK G +E+ Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEV 127 >gi|322667352|gb|EFY63516.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] Length = 141 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 60/143 (41%), Gaps = 17/143 (11%) Query: 82 EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC- 139 R+ V+TGGEP + +PL L K GF +ET+GT E W+ VSPK Sbjct: 1 GYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVCCTPNTWVTVSPKVNMR 60 Query: 140 ------DLKIKGGQELKL------VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL 187 ++ E+K ++ +LQP+ E+ T L Sbjct: 61 GGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQK--EDATRL 118 Query: 188 AISYCFQNPKWRLSVQTHKFIGI 210 I C WRLS+QTHK++ I Sbjct: 119 CIETCIAR-NWRLSMQTHKYLNI 140 >gi|218781985|ref|YP_002433303.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01] gi|218763369|gb|ACL05835.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01] Length = 215 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 61/225 (27%), Positives = 94/225 (41%), Gaps = 44/225 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +QGE + G VF R SGCNL +CR+CDT + G Sbjct: 5 VCEIFYGIQGESTYQGMPCVFIRLSGCNL-----------RCRWCDTGYAYDAGL----- 48 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124 +++++E+ G+ +TGGEPLLQ + P L+ A G + +ETNG+ + Sbjct: 49 -TMSISEIMEK---AGQFGCPIVEVTGGEPLLQKETPALVDAFLNIGLLVLLETNGSQDI 104 Query: 125 ----PQGIDWICV-SPKAGCDL--------KIKGGQELKLV--------FPQVNVSPENY 163 + I + V P +G + ++ ELK V F + V ++ Sbjct: 105 AKVDSRCIRIVDVKCPSSGMEEHNDYSNLSRMTEKDELKFVIASREDYEFARKRVRLLDF 164 Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 G P+ G + LA + RL +Q HKFI Sbjct: 165 DGCRMNAIHFSPVFGELDPK--TLAEWILQDRLEVRLHLQMHKFI 207 >gi|88604065|ref|YP_504243.1| radical SAM family protein [Methanospirillum hungatei JF-1] gi|88189527|gb|ABD42524.1| Radical SAM [Methanospirillum hungatei JF-1] Length = 234 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 93/223 (41%), Gaps = 40/223 (17%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF +LQGEG +G +F R +GCNL C +CDT G Sbjct: 34 KIAEIFTSLQGEGLTSGYPTIFIRLAGCNL-----------SCSYCDTPASRQGGMD--- 79 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI 122 NV ++ ++ Y +TGGEPLLQ D L + L K G +++ETNGT+ Sbjct: 80 MNVSEVVA------GALLQKPHYVCITGGEPLLQKDEVAELARQLIKAGKMVSIETNGTV 133 Query: 123 E-------PPQGIDWICVSPKAGCDLK----IKGGQELKLVF---PQVNVSPENYIGFDF 168 +D C S ++ +K +K V + + + + Sbjct: 134 PFDDLPSDISICMDVKCPSSGEFSNINLLSDLKSTDSVKFVVGTDDDLQYAEKVIMSHPT 193 Query: 169 E-RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + P+ G + + +S +N R+ +Q HKFIG+ Sbjct: 194 KAEIFISPIYGTDYQRIASYILS---RNLPARMQLQLHKFIGL 233 >gi|195953034|ref|YP_002121324.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932646|gb|ACG57346.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 212 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 93/233 (39%), Gaps = 49/233 (21%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV--GIQGTKGG 63 I E+F ++QGEG G A+F RF GCNL +C +CD + TK Sbjct: 2 INEVFYSIQGEGFLIGTPALFVRFQGCNL-----------RCVWCDEKNALDFDKTTKSY 50 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 ++++ D++ VLTGGEPLL D + + I +ETN TI Sbjct: 51 TKAIEEIEDILAAH------NPSLIVLTGGEPLLNEDFINIFSYFKSLDKTIQIETNATI 104 Query: 123 EPPQ--------GIDWICVSPKAGCDLKIK-------GGQELKLVFPQ---VNVSPENYI 164 +I +SPK + I ELK+V + + Y+ Sbjct: 105 LKDDIETLFKTYARTYITLSPKYISNYIIHPKFLAFDKNIELKIVVDEHLNEGILEREYM 164 Query: 165 GFDFER--FSLQPMDG----PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 E+ LQP+ FL++ LA + R+ Q HK +G++ Sbjct: 165 KPFIEKGLLILQPLWENGNVKFLDKAIKLAEKF-----NTRIIPQMHKLLGLK 212 >gi|51948767|gb|AAU14304.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948815|gb|AAU14328.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948877|gb|AAU14359.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948903|gb|AAU14372.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948907|gb|AAU14374.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] Length = 129 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 29/150 (19%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT-- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 ++ L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 ----INTLDDIMGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL 149 ++ V P+ DLK G +E+ Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEV 127 >gi|51948763|gb|AAU14302.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] Length = 129 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 29/150 (19%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT-- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 ----IQTLDDIMGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL 149 ++ V P+ DLK G +E+ Sbjct: 104 LDISA------VDPRVSRVIDLKTPGSKEV 127 >gi|51948733|gb|AAU14287.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948737|gb|AAU14289.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948765|gb|AAU14303.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948771|gb|AAU14306.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948783|gb|AAU14312.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948793|gb|AAU14317.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948795|gb|AAU14318.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948797|gb|AAU14319.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948799|gb|AAU14320.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948801|gb|AAU14321.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948811|gb|AAU14326.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948813|gb|AAU14327.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948817|gb|AAU14329.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948819|gb|AAU14330.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948825|gb|AAU14333.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948829|gb|AAU14335.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948835|gb|AAU14338.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948837|gb|AAU14339.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948841|gb|AAU14341.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948857|gb|AAU14349.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948859|gb|AAU14350.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948861|gb|AAU14351.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948863|gb|AAU14352.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948865|gb|AAU14353.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948867|gb|AAU14354.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948873|gb|AAU14357.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948887|gb|AAU14364.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948889|gb|AAU14365.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948891|gb|AAU14366.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948893|gb|AAU14367.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948895|gb|AAU14368.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948897|gb|AAU14369.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948905|gb|AAU14373.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] Length = 129 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 29/150 (19%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT-- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 ----IHTLDDIMGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL 149 ++ V P+ DLK G +E+ Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEV 127 >gi|218961765|ref|YP_001741540.1| Radical SAM [Candidatus Cloacamonas acidaminovorans] gi|167730422|emb|CAO81334.1| Radical SAM [Candidatus Cloacamonas acidaminovorans] Length = 209 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 62/233 (26%), Positives = 93/233 (39%), Gaps = 49/233 (21%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 K ++ EIF +LQGE ++G +F R S CNL +C +CDT + +G Sbjct: 3 KHLNVTEIFYSLQGESAYSGYPCIFIRLSECNL-----------RCVYCDTQYAFGKGKS 51 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 ++ ++EE + +TGGEPLLQ DV L + L+K ++I +ETNG Sbjct: 52 ------MAISSIMEE---VKKYPCSLTEITGGEPLLQEDVDALFEELHKSSYKILLETNG 102 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGG-----------------QELKLVFP-----QVNV 158 I + D++ D+K G ELK V Q + Sbjct: 103 AISLEKVPDYV----IKIVDVKTPGSGMVDAFLKDNLDYLNDKDELKFVLTDKNDYQFAL 158 Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 S P+ + LA K +L++Q HK IGI Sbjct: 159 SFLAQYKPKVNIIHFSPLTEVLEPK--ELAKWMLKDGIKAKLTLQLHKIIGIE 209 >gi|237755689|ref|ZP_04584298.1| radical SAM domain protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237692139|gb|EEP61138.1| radical SAM domain protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 217 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 53/228 (23%), Positives = 97/228 (42%), Gaps = 38/228 (16%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + + + EIF +++GEG G VF R GCNL +C +CDT + Sbjct: 8 ETFKVVEIFRSVEGEGRWVGLPVVFIRLEGCNL-----------RCSWCDTPYSYT---- 52 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 G + + + D+++E + + +TGGEP ++ L++ L + +++ +ETNG Sbjct: 53 GENFKLLSITDILDE---IKKYNLKRVCITGGEPFFTENLDVLVENLIENSYQVFIETNG 109 Query: 121 TIE--PPQGID----WICVSPKAG----CDLKIKGGQELKLVFPQVNVSPENYIGFDF-- 168 T+ + +D +I SPK + E K V + +S ++ I D Sbjct: 110 TLWNQNFENLDKSKIYITCSPKPPFYFINKNLLPYVSEFKFVVDET-LSIKHIIRSDLIE 168 Query: 169 ----ERFSLQPMDGP--FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + LQP +++ L + R+ Q HK +G+ Sbjct: 169 YIKNDTIVLQPESNKPEMVKKALELQDELLKFGIESRIIPQCHKVLGL 216 >gi|227498703|ref|ZP_03928847.1| radical SAM family protein [Acidaminococcus sp. D21] gi|226904159|gb|EEH90077.1| radical SAM family protein [Acidaminococcus sp. D21] Length = 222 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 88/235 (37%), Gaps = 52/235 (22%) Query: 1 MKL--YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58 MK + + EIF ++ GEG G +A F RF+GCNL +C +CDT + Sbjct: 5 MKTERFPVVEIFDSIDGEGKRTGYMATFVRFAGCNL-----------RCSYCDTAYAWDA 53 Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 + D L I + LTGGEP+LQ L + L G+E+ +ET Sbjct: 54 SQAKEWLSEDNLFQQITA------YPWKRVTLTGGEPMLQPIETLCRRLGDAGYEVNIET 107 Query: 119 NGT----IEPPQ----GIDWICVSPKAGCDLKIK--------GGQELKLVFPQVNVSPEN 162 NG +E P +D SP +G +++ LK V V Sbjct: 108 NGAAALFLERPDRLFYTMDIK--SPSSGEKDRMRWENLSLLTADDVLKFVVGSVEDLRYM 165 Query: 163 YIGFDF----ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLS-----VQTHKFI 208 + + P+ G + + + +LS VQ HK I Sbjct: 166 ETILSTYSIKAQIYVSPVFGKIEPVAL---VDFVKHH---QLSRVCVQVQLHKVI 214 >gi|262373096|ref|ZP_06066375.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Acinetobacter junii SH205] gi|262313121|gb|EEY94206.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Acinetobacter junii SH205] Length = 236 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 89/240 (37%), Gaps = 63/240 (26%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE G VF R +GC L +C +CDT + G Sbjct: 18 LRITEIFYSLQGEANTFGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R +++ + + + + Y +TGGEPL Q + + L+Q L GF++++ET+G + Sbjct: 64 RQSLEHIIETASQ------FKTPYICVTGGEPLAQPNCLVLLQRLCDLGFDVSLETSGAL 117 Query: 123 EPPQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLVFPQVNVSPENY 163 + + V P+ DLK E +K V N + + Sbjct: 118 DVSK------VDPRVSKVLDLKTPTSNEDHRNLLTNLDYLTQHDQIKFVIC--NRADYEW 169 Query: 164 IGFDFERFSLQ---------PMDGPFLEE------NTNLAISYCFQNPKWRLSVQTHKFI 208 E F LQ P +LA + R +Q HK + Sbjct: 170 SKQQLENFQLQDKVSTVWFSPAFAVEKGAVALPALARDLAQWILDDHLPVRFQLQLHKLL 229 >gi|256823062|ref|YP_003147025.1| Radical SAM domain-containing protein [Kangiella koreensis DSM 16069] gi|256796601|gb|ACV27257.1| Radical SAM domain protein [Kangiella koreensis DSM 16069] Length = 213 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 83/232 (35%), Gaps = 50/232 (21%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M I EIF +LQGE G VF R +GC L +C +CDTD+ Sbjct: 1 MSKLRITEIFHSLQGESLTVGVPTVFVRLTGCPL-----------RCVYCDTDYAFG--- 46 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119 G +++ I++ + +TGGEPL Q V + L G++++ ET Sbjct: 47 GGEWMRFEEILAEIKQ------YGCEHVCITGGEPLAQKRVFEFFKLLGDEGYKVSTETG 100 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQE-----------------LKLV------FPQV 156 G + + V DLK QE +K V + Sbjct: 101 GAHDISPVDKRVMV----VMDLKTPDSQEMARNLYSNIELLKPTDQVKFVICSRKDYEWC 156 Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 ++ E Y P G E +LA K R+ VQ HK I Sbjct: 157 KMTVEQYDITSKCEVLFSPSYGQV--EYADLAEWILKDRLKVRMQVQLHKII 206 >gi|51948899|gb|AAU14370.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] Length = 129 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 29/150 (19%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF +LQGE G VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEIFHSLQGETRTTGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT-- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 ----IHTLDDIMGQ---VATYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL 149 ++ V P+ DLK G +E+ Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEV 127 >gi|104781624|ref|YP_608122.1| hypothetical protein PSEEN2518 [Pseudomonas entomophila L48] gi|95110611|emb|CAK15322.1| conserved hypothetical protein [Pseudomonas entomophila L48] Length = 229 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 93/233 (39%), Gaps = 43/233 (18%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + ++E+F TLQGEG ++G + F R SGCNL QC +CDT F + + Sbjct: 15 ETLWVEEVFRTLQGEGPYSGVPSTFVRLSGCNL-----------QCYWCDTQFEAFRWS- 62 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 + ++I VLTGGEP Q PLIQ GF++ +ETNGT Sbjct: 63 ---MTPQAIVEMI---RGLEAPVPELVVLTGGEPFRQSIAPLIQVFLDEGFKVQIETNGT 116 Query: 122 I--EPPQGIDW-ICVSPKAGC-DLKI-KGGQELKLVFPQVNVSPEN-------------- 162 I P G D + SPK DL++ + K V + + Sbjct: 117 IYQAIPTGQDVTVVCSPKTPVLDLRMIEIITHYKYVLAHGEIDEVDGLPGTSTQRAGKKA 176 Query: 163 --YIGFDFERFSLQPM---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + + + P D ++N I + L++Q HK + + Sbjct: 177 RLFRPPQGKPVYVMPRDDYDEQRNKDNLKACID-VATRQGYTLNMQLHKLLNL 228 >gi|51948725|gb|AAU14283.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948727|gb|AAU14284.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948729|gb|AAU14285.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948731|gb|AAU14286.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948735|gb|AAU14288.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948777|gb|AAU14309.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948779|gb|AAU14310.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948781|gb|AAU14311.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948785|gb|AAU14313.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948787|gb|AAU14314.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948789|gb|AAU14315.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948803|gb|AAU14322.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948807|gb|AAU14324.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948809|gb|AAU14325.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948821|gb|AAU14331.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948823|gb|AAU14332.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948827|gb|AAU14334.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948843|gb|AAU14342.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948849|gb|AAU14345.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948869|gb|AAU14355.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948879|gb|AAU14360.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948885|gb|AAU14363.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948901|gb|AAU14371.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] gi|51948909|gb|AAU14375.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] Length = 129 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 29/150 (19%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT-- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 + L D++ + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 51 ----IHTLDDIMGQ---VATYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL 149 ++ V P+ DLK G +E+ Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEV 127 >gi|124486430|ref|YP_001031046.1| hypothetical protein Mlab_1617 [Methanocorpusculum labreanum Z] gi|124363971|gb|ABN07779.1| Radical SAM domain protein [Methanocorpusculum labreanum Z] Length = 202 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 85/221 (38%), Gaps = 34/221 (15%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + E F++LQGEG G F R SGCNL +C +CDT++ +GT Sbjct: 2 RVTETFVSLQGEGERQGMPCFFLRLSGCNL-----------RCAWCDTEYSFEKGTDR-- 48 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI 122 +VD+L I + ++ Y +TGGEPLLQ +PL++ L + +ETNGTI Sbjct: 49 -SVDELVKEIADSGLS------YVCVTGGEPLLQKEELIPLLEILAAADIHVDIETNGTI 101 Query: 123 E-------PPQGIDWICVSPKAGCDL----KIKGGQELKLVFPQVNVSPENYIGFDFERF 171 +D C S DL + +K V + Sbjct: 102 PFDDVSAYASICMDVKCPSSGEMSDLSLLSALTENDCVKFVIGDEADYLYMVEVLAAHKP 161 Query: 172 SLQPMDGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFIGIR 211 P +T + R +Q HK + ++ Sbjct: 162 KAPVCITPVFGTDTKWLVETIIAERLPVRFQLQLHKVVNVQ 202 >gi|119504267|ref|ZP_01626347.1| putative radical activating enzyme [marine gamma proteobacterium HTCC2080] gi|119459775|gb|EAW40870.1| putative radical activating enzyme [marine gamma proteobacterium HTCC2080] Length = 219 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 57/230 (24%), Positives = 87/230 (37%), Gaps = 51/230 (22%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE G VF R +GC L +C +CDT++ G Sbjct: 9 LRITEIFHSLQGEARSVGLPTVFVRLTGCPL-----------RCVWCDTEYAFSGGK--- 54 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 + L + +TGGEPL Q + +PL++ L G+E+++ET+G + Sbjct: 55 ------ILALTQILQQIKSFSCPRVCVTGGEPLAQPESLPLLKQLCDEGYEVSLETSGAL 108 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQ-VNVSPENYIGF--------DFERFS 172 +D VS DLK E + ++ ++P + I F D+ RF Sbjct: 109 PI-ADVDRR-VS--RVMDLKAPDSGESHRNLWDNIAELTPHDQIKFVISSRRDYDWARFK 164 Query: 173 L--------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + P G LA R +Q HK + Sbjct: 165 VDELALAGRVGDILFSPTHGELQPR--ELAEWLLQDRVPGRFQLQLHKLL 212 >gi|184159135|ref|YP_001847474.1| organic radical activating protein [Acinetobacter baumannii ACICU] gi|213158261|ref|YP_002320312.1| radical SAM domain protein [Acinetobacter baumannii AB0057] gi|215482627|ref|YP_002324819.1| Radical SAM superfamily protein [Acinetobacter baumannii AB307-0294] gi|239501047|ref|ZP_04660357.1| Radical SAM superfamily protein [Acinetobacter baumannii AB900] gi|294836636|ref|ZP_06781319.1| Radical SAM superfamily protein [Acinetobacter sp. 6013113] gi|294841429|ref|ZP_06786112.1| Radical SAM superfamily protein [Acinetobacter sp. 6014059] gi|294860793|ref|ZP_06798562.1| Radical SAM superfamily protein [Acinetobacter sp. 6013150] gi|301346460|ref|ZP_07227201.1| Radical SAM superfamily protein [Acinetobacter baumannii AB056] gi|301512446|ref|ZP_07237683.1| Radical SAM superfamily protein [Acinetobacter baumannii AB058] gi|301594745|ref|ZP_07239753.1| Radical SAM superfamily protein [Acinetobacter baumannii AB059] gi|56131240|gb|AAV80241.1| putative organic radical activating enzyme [Acinetobacter baumannii] gi|183210729|gb|ACC58127.1| Organic radical activating enzyme [Acinetobacter baumannii ACICU] gi|213057421|gb|ACJ42323.1| radical SAM domain protein [Acinetobacter baumannii AB0057] gi|213988552|gb|ACJ58851.1| Radical SAM superfamily protein [Acinetobacter baumannii AB307-0294] gi|322509049|gb|ADX04503.1| organic radical activating protein [Acinetobacter baumannii 1656-2] gi|323519031|gb|ADX93412.1| organic radical activating protein [Acinetobacter baumannii TCDC-AB0715] Length = 236 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 57/238 (23%), Positives = 99/238 (41%), Gaps = 59/238 (24%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE +G VF R +GC L +C +CDT + G Sbjct: 18 LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R +++ + + E + + Y +TGGEPL Q + + L+Q L GF++++ET+G + Sbjct: 64 RLSLEHIIETAE------KYQTPYICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSGAL 117 Query: 123 EPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVN-VSPENYIGF-----DFERFSL 173 + + V P+ DLK G+E + + ++ ++P + I F + +S Sbjct: 118 DVSR------VDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKFVICNREDYEWSK 171 Query: 174 QPMDGPFLEE-----------------------NTNLAISYCFQNPKWRLSVQTHKFI 208 Q ++ L+ +LA R +Q HK + Sbjct: 172 QQVEQYQLQTKVSTVWFSPAFAVEKGAVGLPRLARDLAQWILDDKLPVRFQLQLHKLL 229 >gi|86157724|ref|YP_464509.1| radical SAM family protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85774235|gb|ABC81072.1| Radical SAM [Anaeromyxobacter dehalogenans 2CP-C] Length = 210 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 99/230 (43%), Gaps = 55/230 (23%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF ++QGEG AGR VF RF+GC+L +C +CDT + G R Sbjct: 2 RVTEIFFSIQGEGSRAGRPCVFVRFTGCDL-----------RCGYCDTAYAFHGGVDMDR 50 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 A ++ E R+ LTGGEP+LQ ++P L + L RG+E+AVET+G Sbjct: 51 ------AAVLAE---VARHPARFVCLTGGEPMLQRELPDLARDLVARGYEVAVETHGQRP 101 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENYIGF-----DFERFSLQPMD 177 +D + D+K G E+ F ++ + P + + F D R+S + + Sbjct: 102 ----LDALPAEAIRVVDVKTPGSGEVTTDFAYLDRLQPHDEVKFVVCSEDDFRWSREVVR 157 Query: 178 GPFLEENTNLAISYCFQNPKW-------------------RLSVQTHKFI 208 LE +P W RLS+Q HK I Sbjct: 158 RHALEGRVQ-----VLFSPAWGQVAPRDLVRWMLESGLDARLSLQVHKVI 202 >gi|71901732|ref|ZP_00683804.1| Radical SAM [Xylella fastidiosa Ann-1] gi|71728504|gb|EAO30663.1| Radical SAM [Xylella fastidiosa Ann-1] Length = 217 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 92/227 (40%), Gaps = 46/227 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIFL+LQGE G VF R +GC L +C++CDT + G Sbjct: 8 LKISEIFLSLQGEANSVGWPTVFVRLTGCPL-----------RCQYCDTSYAFH---GGE 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 ++D + + + + R+ +TGGEPL Q + L++ L FE+++ET+G + Sbjct: 54 WRSIDTIVNEVRRYGV------RHVCVTGGEPLAQKRCLLLLEKLCDADFEVSLETSGAL 107 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF-------------- 166 + +D VS D+K G E + +P + ++P + I F Sbjct: 108 DI-AAVD-SRVS--RVVDIKTPGSGEAHRNHWPNLTLLTPNDQIKFVLCSRVDYEWARTC 163 Query: 167 ----DFERFSLQPMDGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFI 208 + ER + + L + R +Q HK + Sbjct: 164 VAEHELERRCMVWFSPSKQDIAPTLLADWIISDRLGVRFQLQLHKLL 210 >gi|290967883|ref|ZP_06559433.1| radical SAM domain protein [Megasphaera genomosp. type_1 str. 28L] gi|290782022|gb|EFD94600.1| radical SAM domain protein [Megasphaera genomosp. type_1 str. 28L] Length = 210 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 60/225 (26%), Positives = 89/225 (39%), Gaps = 44/225 (19%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 KLY + E+F ++ GEG AG +A F R GCNL +C +CDT + +GT Sbjct: 4 KLY-VNELFNSIDGEGRRAGELASFIRLCGCNL-----------RCSYCDTTYAFTEGTP 51 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 V+++ ++ R LTGGEPLLQ L+Q L R + +ETNG+ Sbjct: 52 ---MAVEEILSQLQ---------YRNITLTGGEPLLQDVHLLLQRLQDRD--VNIETNGS 97 Query: 122 IEPPQGID----WICVSPKAGCDLKIKGGQE-----------LKLVF-PQVNVSPENYIG 165 + + W V K+ +E LK V ++ I Sbjct: 98 VSIRPYLSYSHVWFTVDYKSISSGMTTAMKEENFQLLRPQDVLKFVVGTHADLEQARKIC 157 Query: 166 FDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 F + F ++Y WRL +Q HK+I Sbjct: 158 AYFNPSCPIYISAVFAAIEPKEIVAYMEAYRLMNWRLQLQLHKYI 202 >gi|223938514|ref|ZP_03630406.1| Radical SAM domain protein [bacterium Ellin514] gi|223892776|gb|EEF59245.1| Radical SAM domain protein [bacterium Ellin514] Length = 244 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 89/241 (36%), Gaps = 49/241 (20%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EI+L+LQGE AG +F R + CNL +C +CDT + +G K G Sbjct: 7 VNEIYLSLQGESTFAGLPCIFVRLTACNL-----------RCSYCDTAYAFTEGAKQGMA 55 Query: 66 NVDQLADLIEEQW--ITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 + + + G + LTGGEPLLQ + +PL++ L GF + +ET+G Sbjct: 56 EMLAEIRTLAASYSQTVGGHKMPLIELTGGEPLLQPNSLPLMKTLCDEGFTVLIETSGAH 115 Query: 123 EPPQ-------GIDWICVSPKAGCDLK------IKGGQELKLV--------FPQVNVSPE 161 + + +D C S + +K E+K V + + + Sbjct: 116 DISKIDSRVRRIMDLKCPSSGEVLRNRRENLRYLKNSDEIKFVIGTEQDYEWAKQQIVEH 175 Query: 162 NYIGFDFERF-SLQPMDGPFLEEN-------------TNLAISYCFQNPKWRLSVQTHKF 207 F +QP+ ++ L R +Q HK Sbjct: 176 KLDAICPLLFSWVQPLTPEQQDKALKKVPAGQTPITRLQLVERIIADALPVRFQLQMHKI 235 Query: 208 I 208 I Sbjct: 236 I 236 >gi|257077184|ref|ZP_05571545.1| ATP binding cassette transporter, ExsD protein related [Ferroplasma acidarmanus fer1] Length = 229 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 43/230 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 +K+Y I EIFL++QGEG ++G VF R CNL +C +CDT + + Sbjct: 14 LKMY-INEIFLSIQGEGLYSGEKMVFIRTEYCNL-----------RCSWCDTKYSFYE-- 59 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 G ++D++ + + I + LTGGEPLLQ D+ L+ L++ + I +ET+ Sbjct: 60 -GKEMSIDEIVE--SARNINSGHGASWICLTGGEPLLQKDISVLVDRLSEE-YNILLETS 115 Query: 120 GTI----------EPPQGIDWICVSPKAGCDLK------IKGGQELKLVFPQV---NVSP 160 G++ + + ID+ S ++ G +K V + NV+ Sbjct: 116 GSLNIGRFLPNHVKVKKDIDFKLPSSGMYRKFNDKNISYMEEGDYIKFVVNDLNDFNVAM 175 Query: 161 ENYIGFDFE-RFSLQPMDGPFLEENTNLAISYCFQNP-KWRLSVQTHKFI 208 E + +QP+ G ++ LA ++ + P RL +Q HK+I Sbjct: 176 EEIEKIGKNVKIVVQPVYGTDIK---VLADAFIDKAPSNARLMLQEHKYI 222 >gi|312898407|ref|ZP_07757797.1| radical SAM domain protein [Megasphaera micronuciformis F0359] gi|310620326|gb|EFQ03896.1| radical SAM domain protein [Megasphaera micronuciformis F0359] Length = 217 Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 59/229 (25%), Positives = 87/229 (37%), Gaps = 46/229 (20%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + E F+++ GEG AG +A+F RF GCNL C +CDT + Sbjct: 2 RVVEKFVSINGEGQRAGELALFIRFQGCNL-----------SCTYCDTAWANEADCPYEE 50 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 + ++ D + +T LTGGEPLLQ + LI L+K GF + +ETNG + Sbjct: 51 ESPQEIVDYACREGVTD------ITLTGGEPLLQEGIDELIDLLSKHGFHVEIETNGAVS 104 Query: 124 PPQGIDWICV--SPKAGCDLKIKGG-----------------QELKLVF---PQVNVSPE 161 C P D K+ G +K V + + E Sbjct: 105 LLP----FCQKRRPSFTMDYKLPGSGCEKAMMTGNFAILTEKDTVKFVVSSTEDLQKAEE 160 Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 +D + F + + + Q WRL +Q HKFI Sbjct: 161 IATRYDLVNHCAVYISPVFGSIDPAQMVDFMKQRRLNGWRLQLQLHKFI 209 >gi|86359303|ref|YP_471195.1| organic-radical-activating protein [Rhizobium etli CFN 42] gi|86283405|gb|ABC92468.1| organic-radical-activating protein [Rhizobium etli CFN 42] Length = 242 Score = 147 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 88/241 (36%), Gaps = 49/241 (20%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + + EIF T+QGEG G VF R GC+ +C +CD+ + + Sbjct: 4 ETIRVSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDSLYA-VDSA 51 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 ++ + + +E L+GG P +Q PLI+ + +G+ A+ET G Sbjct: 52 FRDQWLPMSVEAIWQEVTKLSGGNPLTVSLSGGNPAIQPLRPLIELGHSKGYRFALETQG 111 Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELK----------------LVFPQVNVSPEN 162 ++ + +D + +SPK ++ ++F V+ + Sbjct: 112 SVAQNWFRDLDVLVLSPKPPSSGMHTDWDQVDNCVRLSAGGPEIALKVVIFDDVDYAFAR 171 Query: 163 YIGFDFERF--SLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQT 204 +G + LQP + P +E+ + I W R+ Q Sbjct: 172 EVGQRYPYIPLYLQPGNHTPPPSEDEDARIDIDGVMDRMHWLVDKVTVDRWFAPRVLPQL 231 Query: 205 H 205 H Sbjct: 232 H 232 >gi|260551478|ref|ZP_05825662.1| radical SAM superfamily protein [Acinetobacter sp. RUH2624] gi|260405472|gb|EEW98965.1| radical SAM superfamily protein [Acinetobacter sp. RUH2624] Length = 236 Score = 147 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 98/238 (41%), Gaps = 59/238 (24%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE +G VF R +GC L +C +CDT + G Sbjct: 18 LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R +++ + + E + + Y +TGGEPL Q + + L+Q L GF++++ET+G + Sbjct: 64 RLSLEHIIETAE------KYQTPYICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSGAL 117 Query: 123 EPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVN-VSPENYIGF-----DFERFSL 173 + + V P+ DLK G+E + + ++ ++ + I F + +S Sbjct: 118 DVSK------VDPRVSKVLDLKTPTSGEEHRNLISNLDYLTSHDQIKFVICNREDYEWSK 171 Query: 174 QPMDGPFLEE-----------------------NTNLAISYCFQNPKWRLSVQTHKFI 208 Q ++ L+ +LA R +Q HK + Sbjct: 172 QQVEQYQLQNKVSTVWFSPAFAVEKGAVGLPRLARDLAQWILDDKLPVRFQLQLHKLL 229 >gi|258646637|ref|ZP_05734106.1| putative sigma-54 dependent DNA-binding response regulator [Dialister invisus DSM 15470] gi|260404058|gb|EEW97605.1| putative sigma-54 dependent DNA-binding response regulator [Dialister invisus DSM 15470] Length = 219 Score = 147 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 88/231 (38%), Gaps = 43/231 (18%) Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 MK + + EIF ++ GEG G +AVF RF+GCN +C +CDT + + Sbjct: 1 MKNKFPVAEIFDSIDGEGKRTGYMAVFVRFAGCN-----------IRCTYCDTAYALKES 49 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 ++L I + TGGEPLL + L + G+EI +ETN Sbjct: 50 DAEEFLTKEELLGRIRS------YPWKRITFTGGEPLLHPLQEICDILGEEGYEINIETN 103 Query: 120 GTIEPPQ--------GIDWICVSPKAGCDLKIKGGQE------LKLVFP---QVNVSPEN 162 G + +D+ C +++ +E LK V + E Sbjct: 104 GAVPLLARRSQNLFYTMDYKCTDSGMKSFMRLPNLKELTEEDVLKFVVSSKTDLEDMKEI 163 Query: 163 YIGFDFE---RFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 I + +F + P+ G + Y + + + VQ HK I Sbjct: 164 IIKYFPRGGPKFYVSPVWGKIEPR---ELVEYVRKEKLAEVCVQVQLHKII 211 >gi|15614805|ref|NP_243108.1| hypothetical protein BH2242 [Bacillus halodurans C-125] gi|10174861|dbj|BAB05961.1| BH2242 [Bacillus halodurans C-125] Length = 236 Score = 147 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 85/219 (38%), Gaps = 35/219 (15%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 MK + EIF T+QGEG G+ +F R GC+ C +CD+ F Sbjct: 1 MKRIPVMEIFGPTVQGEGMVIGQKTMFVRTGGCDY-----------SCSWCDSAFTWDGS 49 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118 K D++ +EE G + + ++GG P L + L+ L+ +G +A+ET Sbjct: 50 LKATLRTADEIIAKLEE---IGGERFSHVSISGGNPALHKGIGELVDKLHDKGIRVALET 106 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELK---------------LVFPQVNVSPE 161 G++ + ID + +SPK +L +VF + Sbjct: 107 QGSLWQDWFLKIDDLTISPKPPSSQMKTDFTKLDQIIERLDTKQMSLKVVVFNDEDFRYA 166 Query: 162 NYIGFDFER--FSLQPMDGPFLEENTNLAISYCFQNPKW 198 Y+ + F LQ + + + +L I +W Sbjct: 167 EYVHERYPHVPFFLQVGNEDTVTGDNDLLIRTLLDRYEW 205 >gi|170756011|ref|YP_001781191.1| radical SAM domain-containing protein [Clostridium botulinum B1 str. Okra] gi|169121223|gb|ACA45059.1| radical SAM domain protein [Clostridium botulinum B1 str. Okra] Length = 221 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 55/232 (23%), Positives = 91/232 (39%), Gaps = 48/232 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + E F+++ GEG G++A+F RF+GCNL C +CDT + + Sbjct: 3 FKVVESFVSINGEGRRCGQLAIFIRFAGCNL-----------NCSYCDTLWANEKDVPYE 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVETNGT 121 + + + I+ KE + LTGGEPLLQ + L++ L + + +ETNG+ Sbjct: 52 VLSSKDIYEYIKS------KEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105 Query: 122 IEPPQGIDWICVSPKAGCDLKIK-----------------GGQELKLV------FPQVNV 158 I + ++ I SP D K+ +K V + Sbjct: 106 ILLDEFLN-IENSPSFTMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLEKARE 164 Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 Y D + P+ G N + + + N L +Q HK I Sbjct: 165 IINKYNLIDKTNVYISPVFGKI---NLDTIVEFMKNNRMNGVNLQLQLHKII 213 >gi|293609845|ref|ZP_06692147.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828297|gb|EFF86660.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123071|gb|ADY82594.1| queuosine biosynthesis protein QueE [Acinetobacter calcoaceticus PHEA-2] Length = 236 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 57/238 (23%), Positives = 98/238 (41%), Gaps = 59/238 (24%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE +G VF R +GC L +C +CDT + G Sbjct: 18 LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R++++ + + + + Y +TGGEPL Q + + L+Q L + GF++++ET+G + Sbjct: 64 RFSLEHIIETATQ------FQTPYICVTGGEPLAQPNCLILLQRLCEAGFDVSLETSGAL 117 Query: 123 EPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVN-VSPENYIGF------------ 166 + + V P+ DLK G+E + + ++ ++P + I F Sbjct: 118 DVSR------VDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKFVICNREDYEWSK 171 Query: 167 -DFERFSLQ---------PMDGPFLEE------NTNLAISYCFQNPKWRLSVQTHKFI 208 E++ LQ P +LA R +Q HK + Sbjct: 172 QQVEKYQLQTKVSTVWFSPAFAVEKGAVGLPRLARDLAQWILDDKLPVRFQLQLHKLL 229 >gi|51948805|gb|AAU14323.1| putative radical SAM domain-like protein [Pseudomonas viridiflava] Length = 129 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 29/150 (19%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGTI- 51 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 + +D + + RY +TGGEPL Q + +PL++ L G+E+++ET+G Sbjct: 52 --HTLDDIMGQVVA------YRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSGA 103 Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL 149 ++ V P+ DLK G +E+ Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEV 127 >gi|260556563|ref|ZP_05828781.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Acinetobacter baumannii ATCC 19606] gi|260409822|gb|EEX03122.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Acinetobacter baumannii ATCC 19606] Length = 236 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 57/238 (23%), Positives = 99/238 (41%), Gaps = 59/238 (24%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE +G VF R +GC L +C +CDT + G Sbjct: 18 LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R +++ + + E + + Y +TGGEPL Q + + L+Q L GF++++ET+G + Sbjct: 64 RLSLEHIIETAE------KYQTPYICVTGGEPLAQPNCLILLQGLCDAGFDVSLETSGAL 117 Query: 123 EPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVN-VSPENYIGF-----DFERFSL 173 + + V P+ DLK G+E + + ++ ++P + I F + +S Sbjct: 118 DVSR------VDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKFVICNREDYEWSK 171 Query: 174 QPMDGPFLEE-----------------------NTNLAISYCFQNPKWRLSVQTHKFI 208 Q ++ L+ +LA R +Q HK + Sbjct: 172 QQVEQYQLQTKVSTVWFSPAFAVEKGAVGLPRLARDLAQWILDDKLPVRFQLQLHKLL 229 >gi|313906547|ref|ZP_07839877.1| Radical SAM domain protein [Eubacterium cellulosolvens 6] gi|313468616|gb|EFR63988.1| Radical SAM domain protein [Eubacterium cellulosolvens 6] Length = 218 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 45/229 (19%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + E F+++ GEG HAG +AVF RF GCNL C +CDT + G Sbjct: 2 KVVEKFVSINGEGTHAGELAVFVRFRGCNL-----------NCSYCDTMWANEPGCPYAE 50 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQAL-NKRGFEIAVETNGTI 122 + +Q+ IEE + + LTGGEPLLQ ++P L++ L K+ + +ETNG + Sbjct: 51 ESPEQIVSYIEETKV------KNVTLTGGEPLLQKEMPELLRLLSEKKELRVEIETNGAV 104 Query: 123 EPPQ---------GIDWICVSPKAGCDLK------IKGGQELKLVF------PQVNVSPE 161 + +D+ S ++ ++ +K V + + + Sbjct: 105 DLSGFRNGGGCVFTMDYKLPSSGCENGMRTENFSILEKKDTVKFVVGSRVDLERADQIIQ 164 Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 Y D P+ G E ++Y ++ R+ +Q HK I Sbjct: 165 EYGLIDRCHVYFSPVFGKIEPE---QIVNYMVEHRLNGVRIQIQIHKVI 210 >gi|169632733|ref|YP_001706469.1| putative radical activating enzyme [Acinetobacter baumannii SDF] gi|169151525|emb|CAP00292.1| putative radical activating enzyme [Acinetobacter baumannii] Length = 236 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 99/238 (41%), Gaps = 59/238 (24%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE +G VF R +GC L +C +CDT + G Sbjct: 18 LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R +++ + + E + + Y +TGGEPL Q + + L+Q L GF++++ET+G + Sbjct: 64 RLSLEHIIETAE------KYQTPYICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSGAL 117 Query: 123 EPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVN-VSPENYIGF-----DFERFSL 173 + + V P+ DLK G+E + + ++ ++P + I F + +S Sbjct: 118 DVSR------VDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKFVICNREDYEWSK 171 Query: 174 QPMDGPFLEE-----------------------NTNLAISYCFQNPKWRLSVQTHKFI 208 Q ++ L+ ++A R +Q HK + Sbjct: 172 QQVEQYQLQTKVSTVWFSPAFAVEKGAVGLPRLARDMAQWILDDKLPVRFQLQLHKLL 229 >gi|146329949|ref|YP_001210257.1| BcepGomrgp37 [Burkholderia phage BcepGomr] gi|145321125|gb|ABP63608.1| BcepGomrgp37 [Burkholderia phage BcepGomr] Length = 260 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 66/253 (26%), Positives = 98/253 (38%), Gaps = 67/253 (26%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + IF T+QGEG + GR AVF R +GCNL QC CDT++ + R Sbjct: 22 VHSIFYTIQGEGPYVGRPAVFIRLAGCNL-----------QCPGCDTEYSARK-----RM 65 Query: 66 NVDQLADLIEEQWITGEK-------------EGRYCVLTGGEPLLQVDVPLIQALNKRGF 112 + ++ ++ T + V+TGGEP Q PLI L+ G+ Sbjct: 66 GLLEILTAVQTAIYTRPRARFALEPAFERKIPRPLIVITGGEPFRQSLFPLIWKLSGLGY 125 Query: 113 EIAVETNGTIEPPQGI--DW----ICVSPKAG--CDLKIKGGQELKLVFPQVNVSPEN-- 162 ++ +E+NGT+ P G +W + +SPKAG L K V + V P + Sbjct: 126 KVQIESNGTLAPLAGPFEEWPPFEVVISPKAGKVAALLHHRIIAYKYVLSEGTVDPADGL 185 Query: 163 ---YIGFDFE----------RFSLQPMD--GPF------------LEENTNLAISYCFQN 195 +G +QP + P + N AI Sbjct: 186 PTSVLGLPAAPARPHQGFAGTVYVQPAEHYWPMVDASERVTHHAENDANLVAAIDVAMTF 245 Query: 196 PKWRLSVQTHKFI 208 + L +QTHK I Sbjct: 246 -GYTLCLQTHKMI 257 >gi|331007035|ref|ZP_08330269.1| Queuosine Biosynthesis QueE Radical SAM [gamma proteobacterium IMCC1989] gi|330419162|gb|EGG93594.1| Queuosine Biosynthesis QueE Radical SAM [gamma proteobacterium IMCC1989] Length = 218 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 85/228 (37%), Gaps = 51/228 (22%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF ++QGE G+ VF R +GC L +C +CD+++ G Sbjct: 8 LKITEIFFSIQGEAQTVGKPTVFVRLTGCPL-----------RCHYCDSEYAFY---GGE 53 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R ++D + + Y +TGGEPL Q + L+ L + G ++++ET+G + Sbjct: 54 RMSLDDIMAKVMS------YGATYVCVTGGEPLAQPEARTLLAQLCENGLQVSLETSGAL 107 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF------DFE----- 169 ID I D+K E+ + + ++ + E+ I F D+E Sbjct: 108 ----AIDNIDPRVSVVMDVKTPSSGEMSRNDYDNISLLRAEDQIKFVIGDRQDYEWSLFK 163 Query: 170 -----------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHK 206 P+ L R +Q HK Sbjct: 164 VSEYNLAGSVGEVLFSPIYEQLEPS--QLVEWILADRAPVRFQMQLHK 209 >gi|296112585|ref|YP_003626523.1| radical SAM superfamily protein [Moraxella catarrhalis RH4] gi|295920279|gb|ADG60630.1| radical SAM superfamily protein [Moraxella catarrhalis RH4] gi|326561347|gb|EGE11705.1| radical SAM superfamily protein [Moraxella catarrhalis 7169] gi|326570776|gb|EGE20801.1| radical SAM superfamily protein [Moraxella catarrhalis BC1] gi|326577706|gb|EGE27582.1| radical SAM superfamily protein [Moraxella catarrhalis O35E] Length = 266 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 47/232 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + EIF +LQGE AG +F R +GC L +C +CDT + + G Sbjct: 48 LKLTEIFYSLQGEALTAGLPTIFIRLTGCPL-----------RCHYCDTTYSF---SGGE 93 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R+ +D + I + +TGGEPL Q + + L+ L + G+E+++ET G + Sbjct: 94 RWGLDDIMTHIAQ------YPCWRVCVTGGEPLAQPNAIALMHKLIQSGYEVSLETAGAL 147 Query: 123 EPPQGIDWIC-----VSPKAGCDLK--------IKGGQELKLVFPQV-------NVSPEN 162 + SP +G K + ++K+V N+ ++ Sbjct: 148 SVANVPPLVSKVMDLKSPSSGEADKNLWENLAHLTLHDQIKIVIANRTDYEWAKNIITKH 207 Query: 163 YIGFDFERFSLQPMDG------PFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + L PM + T+LA R +Q HK I Sbjct: 208 ALDDKVGTIWLSPMFNIQENTSHAPKLATDLAEWILKDALPVRFGLQLHKII 259 >gi|222528238|ref|YP_002572120.1| radical SAM domain-containing protein [Caldicellulosiruptor bescii DSM 6725] gi|222455085|gb|ACM59347.1| Radical SAM domain protein [Caldicellulosiruptor bescii DSM 6725] Length = 225 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 94/225 (41%), Gaps = 41/225 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 +++ E F++++GEG +G AVF RF+GCNL C +CDT + + + Sbjct: 14 FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------SCSWCDTKYAN-ENPQYE 61 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + +D L D I I + LTGGEPL+Q + LI L GFE+ +ETNG++ Sbjct: 62 QIGIDALLDFILSTGI------KRVTLTGGEPLIQPHIYILIDRLIYEGFEVNIETNGSV 115 Query: 123 -------EPPQGIDWICVSPKAGCDLKIKGG------QELKLVFP--QVNVSPENYIGFD 167 + +D+ C S + + LK V + + E I Sbjct: 116 SIKHVPRDAIITMDYKCPSSGMEDRMIVDNISLLGQKDVLKFVVGTYEDLKTAERIIKTF 175 Query: 168 FER--FSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 R P+ G + + +N R+ +Q HK I Sbjct: 176 KPRCNIFFSPVFGMIKP---AEIVKFLIENKLFDTRVQIQLHKII 217 >gi|153940843|ref|YP_001390900.1| radical SAM domain-containing protein [Clostridium botulinum F str. Langeland] gi|152936739|gb|ABS42237.1| radical SAM domain protein [Clostridium botulinum F str. Langeland] gi|295318962|gb|ADF99339.1| radical SAM domain protein [Clostridium botulinum F str. 230613] Length = 221 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 48/232 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + E F+++ GEG G++A+F RF+GCNL C +CDT + + Sbjct: 3 FKVVESFISINGEGRRCGQLAIFIRFAGCNL-----------NCSYCDTLWANEKDVPYE 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVETNGT 121 + + + I+ KE + LTGGEPLLQ + L++ L + + +ETNG+ Sbjct: 52 VLSSKDIYEYIKS------KEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQ-ELKLVFPQVN-VSPENYIGF------------- 166 I + ++ I SP D K+ E K+ ++ ++ + F Sbjct: 106 ILLDEFLN-IENSPSFTMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLEKARE 164 Query: 167 --------DFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 D + P+ G N + + + N L +Q HK I Sbjct: 165 IINKYNLVDKTNVYISPVFGKI---NLDTIVEFMKNNRMNGVNLQLQLHKII 213 >gi|302876981|ref|YP_003845614.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|307687672|ref|ZP_07630118.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|302579838|gb|ADL53850.1| Radical SAM domain protein [Clostridium cellulovorans 743B] Length = 220 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 97/239 (40%), Gaps = 60/239 (25%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y + E F+++ GEG AG +AVF RF GCNL +C +CDT + Sbjct: 1 MYKVVEKFVSINGEGLRAGELAVFIRFLGCNL-----------KCSYCDTKWANEPECPY 49 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRG-FEIAVETNG 120 + +++ I+E + R LTGGEPL+Q ++ LI L K G I +ETNG Sbjct: 50 ELMSGEEIYAYIKETGV------RNVTLTGGEPLIQKEMKELIDLLLKDGLLRIEIETNG 103 Query: 121 TIEPPQGIDW------ICVSPKAGCDLK-----------IKGGQELKLVFPQVNVSPENY 163 +++ Q I++ I + K L + +K V N E Sbjct: 104 SVDV-QQINYSSERVSITLDYKGKSSLMEGYMKRDSFKLLTKKDSVKFVV-GDNEDLERA 161 Query: 164 IGFDFERFSL--------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + F E L QP + +N L + R+ +Q HK+I Sbjct: 162 LSFIKECELLEKTNVLFSCIFDKIQPAEVVEFMKNNKLIEA--------RIQLQLHKYI 212 >gi|148379522|ref|YP_001254063.1| radical SAM domain protein [Clostridium botulinum A str. ATCC 3502] gi|153934167|ref|YP_001383899.1| radical SAM domain-containing protein [Clostridium botulinum A str. ATCC 19397] gi|153937587|ref|YP_001387447.1| radical SAM domain-containing protein [Clostridium botulinum A str. Hall] gi|226948886|ref|YP_002803977.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto] gi|148289006|emb|CAL83095.1| putative radical SAM-superfamily protein [Clostridium botulinum A str. ATCC 3502] gi|152930211|gb|ABS35711.1| radical SAM domain protein [Clostridium botulinum A str. ATCC 19397] gi|152933501|gb|ABS39000.1| radical SAM domain protein [Clostridium botulinum A str. Hall] gi|226841117|gb|ACO83783.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto] Length = 221 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 48/232 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + E F+++ GEG G++A+F RF+GCNL C +CDT + + Sbjct: 3 FKVVERFVSINGEGRRCGQLAIFIRFAGCNL-----------NCSYCDTLWANEKDVPYE 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVETNGT 121 + + + I+ KE + LTGGEPLLQ + L++ L + + +ETNG+ Sbjct: 52 VLSSKDIYEYIKS------KEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQ-ELKLVFPQVN-VSPENYIGF------------- 166 I + ++ I SP D K+ E K+ ++ ++ + F Sbjct: 106 ILLDEFLN-IENSPSFTMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLEKARE 164 Query: 167 --------DFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 D + P+ G N + + + N L +Q HK I Sbjct: 165 IINKYNLVDKTNVYISPVFGKI---NLDTIVEFMKNNRMNGVNLQLQLHKII 213 >gi|90022171|ref|YP_527998.1| putative radical activating enzyme [Saccharophagus degradans 2-40] gi|89951771|gb|ABD81786.1| Radical SAM [Saccharophagus degradans 2-40] Length = 216 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 55/229 (24%), Positives = 86/229 (37%), Gaps = 53/229 (23%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE G VF R +GC L +C +CD+++ G Sbjct: 6 LRITEIFHSLQGEARTVGLPTVFVRLTGCPL-----------RCHYCDSEYAFH---GGE 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R + +Q+ + + +Y +TGGEPL Q + L+ L G+ +++ET+G + Sbjct: 52 RLSFEQILEQV------AGFGAKYVCVTGGEPLAQPGCIDLLSRLCDLGYNVSLETSGAM 105 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQE-----------LKLVFPQVNVSPENYIGFDFERF 171 + + + + DLK E LKL QV + +D+ RF Sbjct: 106 DVSKVDHRVSI----VLDLKTPASGEQDKNLYTNIPLLKLK-DQVKFVICDRGDYDWARF 160 Query: 172 SL--------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHK 206 L P + LA R +Q HK Sbjct: 161 QLDQLQLVSKVGDVLFSPSFEQLAPK--QLAEWILDDRLPVRFQMQLHK 207 >gi|325981315|ref|YP_004293717.1| Radical SAM domain-containing protein [Nitrosomonas sp. AL212] gi|325530834|gb|ADZ25555.1| Radical SAM domain protein [Nitrosomonas sp. AL212] Length = 219 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 50/231 (21%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + EIF +LQGE G VF R +GC L +C +CDT + T Sbjct: 8 TTLRVNEIFFSLQGETSRVGLPTVFVRLTGCPL-----------RCGYCDTAYAF---TG 53 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNG 120 G ++ ++ + I + Y +TGGEPL Q + L+ AL + +++ET+G Sbjct: 54 GENISIAEILNRI------AHYKTNYITVTGGEPLAQKACLVLLTALCDAKYSVSLETSG 107 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQ-VNVSPENYIGF------------ 166 ++ Q +D D+K G E+ K + ++++P++ I F Sbjct: 108 ALDLSQ-VDLRVC---KVMDIKTPGSGEVTKNNWENLIHLTPKDEIKFVLCDEADYQWAR 163 Query: 167 ---DFERFSL------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 ++ SL P+ LA R+ +Q HK + Sbjct: 164 EIIRCKQLSLLCPILFSPVYDVLNPA--TLASWILRDELPVRMQLQMHKLL 212 >gi|326573561|gb|EGE23524.1| radical SAM superfamily protein [Moraxella catarrhalis 101P30B1] Length = 246 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 47/232 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + EIF +LQGE AG +F R +GC L +C +CDT + + G Sbjct: 28 LKLTEIFYSLQGEALTAGLPTIFIRLTGCPL-----------RCHYCDTTYSF---SGGE 73 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R+ +D + I + +TGGEPL Q + + L+ L + G+E+++ET G + Sbjct: 74 RWGLDDIMTHIAQ------YPCWRVCVTGGEPLAQPNAIALMHKLIQSGYEVSLETAGAL 127 Query: 123 EPPQGIDWIC-----VSPKAGCDLK--------IKGGQELKLVFPQV-------NVSPEN 162 + SP +G K + ++K+V N+ ++ Sbjct: 128 SVANVPPLVSKVMDLKSPSSGEADKNLWENLAHLTLHDQIKIVIANRTDYEWAKNIITKH 187 Query: 163 YIGFDFERFSLQPMDG------PFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + L PM + T+LA R +Q HK I Sbjct: 188 ALDDKVGTIWLSPMFNIQENTSHAPKLATDLAEWILKDALPVRFGLQLHKII 239 >gi|50085673|ref|YP_047183.1| putative radical activating enzyme [Acinetobacter sp. ADP1] gi|49531649|emb|CAG69361.1| putative radical activating enzyme [Acinetobacter sp. ADP1] Length = 245 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 92/238 (38%), Gaps = 59/238 (24%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE AG VF R +GC L +C +CDT + G Sbjct: 27 LRITEIFYSLQGEANAAGLPTVFIRLTGCPL-----------RCTYCDTTYSF---EGGE 72 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R ++D++ + + Y +TGGEPL Q + + L+ L+ G ++++ET+GT+ Sbjct: 73 RLSLDEIINT------ALSYKTPYICVTGGEPLAQPNCLILLSRLSDLGCQVSLETSGTL 126 Query: 123 EPPQGIDWICVSPKAG--CDLKIKGGQELKLV----------FPQVNVSPENYIGFDFER 170 + + V P+ DLK E K Q+ N+ + + + Sbjct: 127 DVSK------VDPRVSKVLDLKTPTSGEEKRNLLSNLDYLTQHDQIKFVICNHEDYIWSK 180 Query: 171 --------------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 F+++ + +LA + R +Q HK + Sbjct: 181 QQVVEYQLEKKVSTVWFSPAFAVEKGAVKLPQLARDLAQWILDDHLPVRFQLQLHKLL 238 >gi|206889913|ref|YP_002249329.1| radical activating enzyme [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741851|gb|ACI20908.1| radical activating enzyme [Thermodesulfovibrio yellowstonii DSM 11347] Length = 208 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 60/232 (25%), Positives = 90/232 (38%), Gaps = 52/232 (22%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF ++QGE AG VF R +GCNL +C +CDT + + G Sbjct: 2 KVCEIFTSIQGESSLAGIPMVFVRLTGCNL-----------RCSYCDTKYAYYE---GEE 47 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 +++++ + I +Y +TGGEPLLQ + LI L K + +ETNG+I Sbjct: 48 LSINKVLEKIHS------FPFQYVEITGGEPLLQDETYKLINELVKS-HNVLIETNGSIP 100 Query: 124 PPQGIDWICVSPKAGCDLKIKGG-----------------QELKLVFPQVNVSP--ENYI 164 + + K D+K G E+K V + +N+I Sbjct: 101 IEK----VNPEVKIIMDIKTPGSGMSEKNYIENLRFLKKIDEVKFVLTNRDDYEWAKNFI 156 Query: 165 G---FDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI--GIR 211 P G LA RL++Q HK+I IR Sbjct: 157 KNHEIKANEILFSPAYGILNPA--ELAKWLINDGISVRLNLQIHKYIFGNIR 206 >gi|326560168|gb|EGE10557.1| radical SAM superfamily protein [Moraxella catarrhalis 103P14B1] gi|326564255|gb|EGE14489.1| radical SAM superfamily protein [Moraxella catarrhalis 46P47B1] gi|326566195|gb|EGE16348.1| radical SAM superfamily protein [Moraxella catarrhalis 12P80B1] gi|326571649|gb|EGE21664.1| radical SAM superfamily protein [Moraxella catarrhalis BC7] gi|326573039|gb|EGE23015.1| radical SAM superfamily protein [Moraxella catarrhalis CO72] Length = 238 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 47/232 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + EIF +LQGE AG +F R +GC L +C +CDT + + G Sbjct: 20 LKLTEIFYSLQGEALTAGLPTIFIRLTGCPL-----------RCHYCDTTYSF---SGGE 65 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R+ +D + I + +TGGEPL Q + + L+ L + G+E+++ET G + Sbjct: 66 RWGLDDIMTHIAQ------YPCWRVCVTGGEPLAQPNAIALMHKLIQSGYEVSLETAGAL 119 Query: 123 EPPQGIDWIC-----VSPKAGCDLK--------IKGGQELKLVFPQV-------NVSPEN 162 + SP +G K + ++K+V N+ ++ Sbjct: 120 SVANVPPLVSKVMDLKSPSSGEADKNLWENLAHLTLHDQIKIVIANRTDYEWAKNIITKH 179 Query: 163 YIGFDFERFSLQPMDG------PFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + L PM + T+LA R +Q HK I Sbjct: 180 ALDDKVGTIWLSPMFNIQENTSHAPKLATDLAEWILKDALPVRFGLQLHKII 231 >gi|226952147|ref|ZP_03822611.1| radical activating enzyme [Acinetobacter sp. ATCC 27244] gi|294651041|ref|ZP_06728380.1| radical activating enzyme [Acinetobacter haemolyticus ATCC 19194] gi|226837109|gb|EEH69492.1| radical activating enzyme [Acinetobacter sp. ATCC 27244] gi|292823054|gb|EFF81918.1| radical activating enzyme [Acinetobacter haemolyticus ATCC 19194] Length = 238 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 51/234 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE G VF R +GC L +C +CDT + G Sbjct: 20 LRITEIFYSLQGEANTFGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 65 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R +++ + + + + Y +TGGEPL Q + + L+Q L GF++++ET+G + Sbjct: 66 RLSLEHIIETASQ------YKTPYICVTGGEPLAQPNCLILLQRLCDLGFQVSLETSGAL 119 Query: 123 E-------PPQGIDWICVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYIGFDFE 169 + + +D + K + ++K V N + + E Sbjct: 120 DVSKVDSRVSKVLDLKTPTSKEDHRNLLTNLDYLTQHDQIKFVIC--NRADYEWSRQQLE 177 Query: 170 RFSLQ---------PMDGPFLEE------NTNLAISYCFQNPKWRLSVQTHKFI 208 +F LQ P +LA + R +Q HK + Sbjct: 178 QFQLQDKVSTVWFSPAFAVEKGAVALPALARDLAQWILDDHLPVRFQLQLHKLL 231 >gi|251771685|gb|EES52260.1| Radical SAM family protein [Leptospirillum ferrodiazotrophum] Length = 213 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 55/229 (24%), Positives = 90/229 (39%), Gaps = 47/229 (20%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I E F ++QGE AG F R +GC L +CR+CDT + +G + Sbjct: 1 MMRINETFFSIQGESTFAGWPCFFIRTTGCPL-----------RCRWCDTTYSFYEGEE- 48 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 L L++E +TGGEP ++P L++ L G + +ET+G Sbjct: 49 -----RTLDSLVDEAL---SHPAPLVEVTGGEPFSAPELPRLVEKLLDAGKTVLIETSGA 100 Query: 122 IEPPQGIDWIC------VSPKAGCDL--------KIKGGQELKLVFPQVNVSPENYIGFD 167 + PQG+D C P +G ++ G E+K V + ++ Sbjct: 101 LPVPQGLDRRCHLVMDIKPPGSGMAHLMAEETFRALRPGDEIKAVI--ADRGDFDFCLDF 158 Query: 168 FERFSL--------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 +R +L P+ G LA + R+ +Q HK + Sbjct: 159 LDRLALPREIPVTFSPVFGECSPG--ELAEWVLSSGREIRVGIQLHKIL 205 >gi|225025886|ref|ZP_03715078.1| hypothetical protein EUBHAL_00114 [Eubacterium hallii DSM 3353] gi|224956783|gb|EEG37992.1| hypothetical protein EUBHAL_00114 [Eubacterium hallii DSM 3353] Length = 221 Score = 145 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 95/234 (40%), Gaps = 47/234 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y + E F+++ GEG AG++A F R GCNL C +CDT + + Sbjct: 1 MITYPVVEKFVSINGEGQKAGKIAAFIRMRGCNL-----------ACNYCDTSWANTKDC 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119 + ++L ++E I LTGGEPLL ++ PLI+AL GF + +ETN Sbjct: 50 PCEFLSAEELITWLKEHSIE------NVTLTGGEPLLTEEIAPLIEALGTAGFSVEIETN 103 Query: 120 GTIE----------PPQGIDWICVSPKAGCDLKIKG------GQELKLVFPQV-NVSPEN 162 G++ P +D+ C + +K V + ++ Sbjct: 104 GSVSLNTFDTLAHRPAFTMDYKCPDSGMENAMNTDNFSLLIPKDTVKFVVSSISDLDKAR 163 Query: 163 YIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKW---RLSVQTHKFI 208 I ++ L P+ G + Y ++ W RL +Q HKFI Sbjct: 164 EICIQYKVAEHCPIFLSPVFGRIEP---KEIVEYMIEH-HWNEARLQLQMHKFI 213 >gi|255525616|ref|ZP_05392550.1| Radical SAM domain protein [Clostridium carboxidivorans P7] gi|296185503|ref|ZP_06853913.1| radical SAM domain protein [Clostridium carboxidivorans P7] gi|255510706|gb|EET87012.1| Radical SAM domain protein [Clostridium carboxidivorans P7] gi|296050337|gb|EFG89761.1| radical SAM domain protein [Clostridium carboxidivorans P7] Length = 221 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 57/232 (24%), Positives = 94/232 (40%), Gaps = 48/232 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + E F+++ GEG +G++AVF RF+GCNL +C +CDT + + Sbjct: 3 FKVVEKFISINGEGPMSGQLAVFIRFAGCNL-----------RCSYCDTLWANEKDVPYE 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALN-KRGFEIAVETNGT 121 +N ++ + I+ I + LTGGEPL+Q D+ L++ L + + VETNG+ Sbjct: 52 TFNAKEIYEYIKSTSI------KNVTLTGGEPLMQQDIMELLKLLCEDKNLYVEVETNGS 105 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGG-----------------QELKLVFPQV----NVSP 160 I + + + P D K+ +K V + Sbjct: 106 IAVDKFLK-VENPPSLTMDYKLPSSNMENNMNMDNLKYLTKNDTVKFVAGSIEDLEKAKN 164 Query: 161 ENYIGFDFE--RFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 YI E R + P+ G + + + N L VQ HK I Sbjct: 165 IIYIHKLVEKTRVYISPVFGKI---AMDEIVQFMLDNKMNGVNLQVQLHKII 213 >gi|118594347|ref|ZP_01551694.1| Radical SAM [Methylophilales bacterium HTCC2181] gi|118440125|gb|EAV46752.1| Radical SAM [Methylophilales bacterium HTCC2181] Length = 216 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 91/231 (39%), Gaps = 52/231 (22%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIF +LQGE G +F R +GC + +C +CDT + + Sbjct: 5 QTLKINEIFYSLQGESSRIGLPTIFIRLTGCPM-----------RCNYCDTAYAFHE--- 50 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 G ++D + + I++ + + +TGGEPL Q + L+ L G+ +++ET G Sbjct: 51 GKNLSIDAIIEEIKQ------YDTNFITVTGGEPLAQRNCYSLLDQLCSLGYNVSLETGG 104 Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGG-----------------QELKLVFPQV------- 156 + I+ + + K D+K G E+K+V Sbjct: 105 AL----SINEVHENVKIILDIKTPGSGESENNHWDNLPLIKQKDEIKMVITNQEDYEWSK 160 Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207 N+ E + +++ P G LA N K R+ VQ HK Sbjct: 161 NIIQEKGLYLNYDILF-SPSFGQLEPS--QLADWILQDNLKVRMQVQLHKI 208 >gi|169795077|ref|YP_001712870.1| putative radical activating enzyme [Acinetobacter baumannii AYE] gi|169148004|emb|CAM85867.1| putative radical activating enzyme [Acinetobacter baumannii AYE] Length = 236 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 98/238 (41%), Gaps = 59/238 (24%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE +G VF R +GC L +C +CDT + G Sbjct: 18 LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R +++ + + E + + Y +TGGEPL Q + + L+Q L F++++ET+G + Sbjct: 64 RLSLEHIIETAE------KYQTPYICVTGGEPLAQPNCLILLQRLCDASFDVSLETSGAL 117 Query: 123 EPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVN-VSPENYIGF-----DFERFSL 173 + + V P+ DLK G+E + + ++ ++P + I F + +S Sbjct: 118 DVSR------VDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKFVICNREDYEWSK 171 Query: 174 QPMDGPFLEE-----------------------NTNLAISYCFQNPKWRLSVQTHKFI 208 Q ++ L+ +LA R +Q HK + Sbjct: 172 QQVEQYQLQTKVSTVWFSPAFAVEKGAVGLPRLARDLAQWILDDKLPVRFQLQLHKLL 229 >gi|160893109|ref|ZP_02073897.1| hypothetical protein CLOL250_00655 [Clostridium sp. L2-50] gi|156865192|gb|EDO58623.1| hypothetical protein CLOL250_00655 [Clostridium sp. L2-50] Length = 222 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 46/234 (19%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + + E F+++ GE AG +AVF RF+GCNL C +CDT + Sbjct: 1 MAKFKVAERFVSINGESVKAGELAVFIRFTGCNL-----------NCSYCDTKWANEADA 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALN-KRGFEIAVET 118 +++ D I+ + R LTGGEPL+Q D+ L+ L ++ VET Sbjct: 50 PYEELTDEEIYDYIKRTGV------RNVTLTGGEPLIQKDIDKLLLMLAMDEELQVEVET 103 Query: 119 NGTIEPPQ---GIDWICVS-----PKAGCDLKI--------KGGQELKLVFPQVN----- 157 NG+++ + D + + P +G + + +K V + Sbjct: 104 NGSVDIAEFKALTDRVAFTLDYKLPGSGMESNMCFSNYNYIDKKDAVKFVSGSIKDLETA 163 Query: 158 VSPENYIGFDFE-RFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 + D + + P+ G E+ + + +N +L +Q HK+I Sbjct: 164 RDIIHEWALDIKSNVYISPVYGKINPED---IVDFMIENEMNGVKLQLQLHKYI 214 >gi|261855156|ref|YP_003262439.1| radical SAM protein [Halothiobacillus neapolitanus c2] gi|261835625|gb|ACX95392.1| Radical SAM domain protein [Halothiobacillus neapolitanus c2] Length = 227 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 58/229 (25%), Positives = 94/229 (41%), Gaps = 50/229 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE AG VF R +GC L +C +CDT + T G Sbjct: 18 LRITEIFRSLQGESESAGWPTVFVRLTGCPL-----------RCVYCDTAYAF---TGGE 63 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 R ++ + D + + +TGGEPL Q +PL+ +L G +++ET+G + Sbjct: 64 RLSLLSILDQVAA------YHTQDVCVTGGEPLAQPACLPLLTSLCDAGHLVSLETSGAL 117 Query: 123 EPPQGIDWICVSP--KAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF-----DFERFSL 173 V P + DLK E K F ++ + + I F + ++++ Sbjct: 118 SIEG------VDPRVRVVMDLKTPSSGEAEKNRFENIDLLKTSDEIKFVIGSAEDFKWAV 171 Query: 174 QPMDG------------PFLEENTNLAI-SYCFQN-PKWRLSVQTHKFI 208 Q + P + T LA+ + ++ + R Q HK I Sbjct: 172 QHVRQFQMDKRFNVLISPVFGQVTPLALADWILESGLRLRFQQQLHKLI 220 >gi|153005327|ref|YP_001379652.1| radical SAM domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152028900|gb|ABS26668.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5] Length = 210 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 88/225 (39%), Gaps = 45/225 (20%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF +LQGEG AGR VF RF+GC+L +C +CD+ + G Sbjct: 2 RVTEIFFSLQGEGTRAGRPCVFVRFTGCDL-----------RCGYCDSAYAFH---GGRE 47 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 ++ I + LTGGEP+LQ ++P L + L RG E+ VET+G Sbjct: 48 LTRAEILAEIARH------PAKLVCLTGGEPMLQRELPELARELVARGHEVTVETHGQRP 101 Query: 124 ----PPQGIDWICV----SPKAGCDLKIKGG----QELKLV--------FPQVNVSPENY 163 PP+ I + V S + DL G E+K V + V Sbjct: 102 LDALPPETIRIVDVKTPGSREEAKDLAYLDGLRPQDEVKFVVCSEPDYRWSVDVVRRHRL 161 Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 G P G LA RLS+Q HK I Sbjct: 162 EG--RAHLLFSPAWGEVEPR--ELARWILRDGLDARLSLQIHKVI 202 >gi|170758709|ref|YP_001786976.1| radical SAM domain-containing protein [Clostridium botulinum A3 str. Loch Maree] gi|169405698|gb|ACA54109.1| radical SAM domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 221 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 55/232 (23%), Positives = 91/232 (39%), Gaps = 48/232 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + E F+++ GEG G++A+F RF+GCNL C +CDT + + Sbjct: 3 FKVAERFVSINGEGRRCGQLAIFIRFAGCNL-----------NCSYCDTLWANEKDVPYE 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVETNGT 121 + + + I+ KE + LTGGEPLLQ + L++ L + + +ETNG+ Sbjct: 52 VLSSKDIYEYIKS------KEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105 Query: 122 IEPPQGIDWICVSPKAGCDLKIK-----------------GGQELKLV------FPQVNV 158 I + ++ I SP D K+ +K V + Sbjct: 106 ILLDEFLN-IENSPSFTMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLEKARE 164 Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 Y D + P+ G N + + + N L +Q HK I Sbjct: 165 IINRYDLVDKTNVYISPVFGKI---NLDTIVEFMKNNRMNGVNLQLQLHKII 213 >gi|196230866|ref|ZP_03129727.1| Radical SAM domain protein [Chthoniobacter flavus Ellin428] gi|196225207|gb|EDY19716.1| Radical SAM domain protein [Chthoniobacter flavus Ellin428] Length = 231 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 20/142 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF ++QGEG G +VF R SGCNL +CR+CDT + +G Sbjct: 3 ISEIFYSIQGEGELTGVPSVFVRTSGCNL-----------RCRWCDTKYASW-NPQGDEM 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP 124 ++ ++ ++ + VLTGGEP++ + L Q + G I +ET GTI P Sbjct: 51 SIAEIFARVDA------FPATHVVLTGGEPMVAKGIHELAQRFREAGKHITIETAGTIAP 104 Query: 125 PQ-GIDWICVSPKAGCDLKIKG 145 D +SPK G ++G Sbjct: 105 EGIACDLASLSPKLGNSTPLEG 126 >gi|320105235|ref|YP_004180826.1| Radical SAM domain-containing protein [Isosphaera pallida ATCC 43644] gi|319752517|gb|ADV64277.1| Radical SAM domain protein [Isosphaera pallida ATCC 43644] Length = 293 Score = 144 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 46/228 (20%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + E++ ++QGEG AG VF R + C+L +C +CDT + +GG Sbjct: 80 RLHEVYRSIQGEGTWAGLPCVFVRLTACHL-----------RCVYCDTPHAFV-FREGGD 127 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 + ++ + + E G +TGGEPLLQ + +PL+ AL GFE+ +ET+G+++ Sbjct: 128 FTIEAIVARVAELAEPGG----LVEVTGGEPLLQPEALPLMTALADAGFEVLLETSGSLD 183 Query: 124 PPQGIDWICVSPKAGCDLKIKG-GQELKLVFPQVN-VSPENYIGF------DFER----- 170 + + DLK G G+E ++ ++ + P + + F DF+ Sbjct: 184 IAPVDRRVHI----IMDLKTPGSGEEAANLWTNLDHLKPTDNLKFVVTNRADFDWTLEIV 239 Query: 171 ----------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + P + LA R+ +Q HK I Sbjct: 240 RRHDLTARCPVLVSPAFDAVSPRD--LAEWILKSRLPLRMQLQLHKLI 285 >gi|150017397|ref|YP_001309651.1| radical SAM domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149903862|gb|ABR34695.1| Radical SAM domain protein [Clostridium beijerinckii NCIMB 8052] Length = 222 Score = 144 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 52/236 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +++I E FL++ GEG +G +A F RF GCNL +C +CDT + + Sbjct: 1 MFNIIEKFLSIDGEGPTSGELATFIRFQGCNL-----------RCSWCDTTYSWDKENTS 49 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALN-KRGFEIAVETNG 120 +++ I+E +T LTGGEPL+Q ++ L+ LN ++ +ETNG Sbjct: 50 EVLTAEEIYKYIKENKVT------NVTLTGGEPLIQKNIHELLGLLNSDDNLKVHIETNG 103 Query: 121 TI--------EPPQGIDWICVSPKAGCDLKIKGGQ-------ELKLVFPQVNVSPENYIG 165 + I +I V K + E V+ V S E+ + Sbjct: 104 AVNIGTFKNKFINNNISYI-VDFKLPSSNMMDRMDLNNLSIVESNDVYKFVIGSKED-LQ 161 Query: 166 FDFERF-----------SLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 +E L P+ G + + K RL VQ HK I Sbjct: 162 IAYEIICKHNLTSKCFVYLSPVSGNIE---MQEIVEFMKDKKLNKVRLQVQLHKII 214 >gi|93005554|ref|YP_579991.1| radical SAM family protein [Psychrobacter cryohalolentis K5] gi|92393232|gb|ABE74507.1| Radical SAM [Psychrobacter cryohalolentis K5] Length = 244 Score = 144 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 87/244 (35%), Gaps = 65/244 (26%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + EIF +LQGE ++G +F R +GC L +C +CDT++ + G Sbjct: 20 LRLTEIFYSLQGEALNSGLPTIFVRLTGCPL-----------RCVYCDTEYAF---SGGE 65 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R +++ + I + LTGGEPL Q + + L++ L G+EI++ET G + Sbjct: 66 RQSLETIMATI------ASFPCKRICLTGGEPLAQPNAIELMKRLLNEGYEISLETAGAL 119 Query: 123 EPPQGIDWICVSP--KAGCDLKIKGGQELKLV----------FPQVNVSPENYIGFDFER 170 V P DLK E+ Q+ N +D+ + Sbjct: 120 TVEN------VPPAVSKVMDLKTPSSGEVDKNLWSNLDYLTQHDQIKFVIMNRTDYDWAK 173 Query: 171 FSL--------------QPMDGPFLEE------------NTNLAISYCFQNPKWRLSVQT 204 L PM E+ LA R +Q Sbjct: 174 AKLIDYKLNDLVGTVWFSPMFNVAHEDTANDNSPEVPVLARELAEWMLTDALPVRFQLQL 233 Query: 205 HKFI 208 HK I Sbjct: 234 HKII 237 >gi|326569745|gb|EGE19795.1| radical SAM superfamily protein [Moraxella catarrhalis BC8] Length = 238 Score = 144 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 47/232 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + EIF +LQGE AG +F R +GC L +C +CDT + + G Sbjct: 20 LKLTEIFYSLQGEALTAGLPTIFIRLTGCPL-----------RCHYCDTTYSF---SGGE 65 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R+ +D + I + +TGGEPL Q + + L+ L + G+E+++ET G + Sbjct: 66 RWGLDDIMTHIAQ------YPCWRVCVTGGEPLAQPNAITLMHKLIQSGYEVSLETAGAL 119 Query: 123 EPPQGIDWIC-----VSPKAGCDLK--------IKGGQELKLVFPQV-------NVSPEN 162 + SP +G K + ++K+V N+ ++ Sbjct: 120 SVANVPPLVSKVMDLKSPSSGEADKNLWENLAHLTLHDQIKIVIANRTDYEWAKNIITKH 179 Query: 163 YIGFDFERFSLQPMDG------PFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + L PM + T+LA R +Q HK I Sbjct: 180 ALDDKVGTIWLSPMFNIQENTSHAPKLATDLAEWILKDALPVRFGLQLHKII 231 >gi|239906320|ref|YP_002953061.1| hypothetical protein DMR_16840 [Desulfovibrio magneticus RS-1] gi|239796186|dbj|BAH75175.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 210 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 57/228 (25%), Positives = 84/228 (36%), Gaps = 48/228 (21%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + EIF ++QGE +AG F R SGCNL CR+CDT G Sbjct: 1 MLKVHEIFASIQGESSYAGWPCGFLRLSGCNL-----------ACRWCDTLHA------G 43 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 Y +AD G +TGGEPLL P L++ L + VETNG+ Sbjct: 44 DSYAEMTVADATAALAGLGL---PLVEVTGGEPLLAPQTPELVKRLCDLDLTVLVETNGS 100 Query: 122 IEP-------PQGIDWICVSPKAGCDL--------KIKGGQELKLVFPQVNVSPENYIGF 166 + +D C P +G + +++ E+K V + + ++ Sbjct: 101 FDIAVLDARATAVVDVKC--PGSGMEHRNDYGNLERLRPHDEVKFVL--ADRTDYDFALD 156 Query: 167 DFERFS------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 R P+ LA + RL +Q HK I Sbjct: 157 IASRIWRTHIVHFSPVAATLASA--ELAAWMVADRVQARLGLQLHKHI 202 >gi|108763752|ref|YP_628748.1| radical SAM domain-containing protein [Myxococcus xanthus DK 1622] gi|108467632|gb|ABF92817.1| radical SAM domain protein [Myxococcus xanthus DK 1622] Length = 230 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 62/225 (27%), Positives = 91/225 (40%), Gaps = 47/225 (20%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 +KEI+L++QGE HAG + F R +GC+L +C +CD++F G + Sbjct: 21 VKEIYLSVQGESSHAGLLCAFIRLTGCHL-----------RCTYCDSEFAFHGGAR---- 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE- 123 ++AD++ E +TGGEPLLQ V PL++AL GF++ +ET+G I+ Sbjct: 66 --RKIADIVSEVRGL---RTPMVEVTGGEPLLQPGVYPLMEALLDAGFKVLLETSGAIDV 120 Query: 124 --PPQG----IDWICVSPKAGCDLKIKG------GQELKLVFPQVNVSPENY---IGFDF 168 P +D S + ELK V S E+Y Sbjct: 121 RLVPPAVHKIVDMKTPSSGEHLRNDYRNFTSMNANDELKFVIG----SREDYDWAKALIA 176 Query: 169 ERFSLQPMDGPFLEEN------TNLAISYCFQNPKWRLSVQTHKF 207 E LQ G LA R +Q HK+ Sbjct: 177 EHQLLQKPYGSLFSTVFDKLHPRELAEWVIEDRLAVRFQLQMHKY 221 >gi|168180208|ref|ZP_02614872.1| radical SAM domain protein [Clostridium botulinum NCTC 2916] gi|182669011|gb|EDT80987.1| radical SAM domain protein [Clostridium botulinum NCTC 2916] Length = 221 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 48/232 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + E F+++ GEG G++A+F RF+GCNL C +CDT + + Sbjct: 3 FKVVERFVSINGEGRCCGQLAIFIRFAGCNL-----------NCSYCDTLWANEKDVSYE 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVETNGT 121 + + + ++ KE + LTGGEPLLQ + L++ L + + +ETNG+ Sbjct: 52 VLSSKDIYEYVKS------KEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQ-ELKLVFPQVN-VSPENYIGF------------- 166 I + ++ I SP D K+ E K+ ++ ++ + F Sbjct: 106 ILLDEFLN-IENSPSFTMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLEKARE 164 Query: 167 --------DFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 D + P+ G N + + + N L +Q HK I Sbjct: 165 IINKYNLVDKTNVYISPVFGKI---NLDTIVEFMKNNRMNGVNLQLQLHKII 213 >gi|209551071|ref|YP_002282988.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536827|gb|ACI56762.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 242 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 85/241 (35%), Gaps = 49/241 (20%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + I EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 4 ETIRISEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDSLHA-VDSA 51 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 ++ + + ++ L+GG P +Q PLI+ + +G+ A+ET G Sbjct: 52 FRDQWLPMSVEAVWQQVTKLSGGRPLTVSLSGGNPAIQPLGPLIEFGHSQGYRFALETQG 111 Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELK----------------LVFPQVNVSPEN 162 ++ + + +D + +SPK + E+ +VF + + Sbjct: 112 SVARDWFRDLDMLVLSPKPPSSGMLTDWDEVDNCLRLAAGGPDIVLKIVVFDDADYAFAR 171 Query: 163 YIGFDFERF--SLQPMDGPFLEENTNLA---ISYCFQNPKW-------------RLSVQT 204 G + LQP + + + A I W R+ Q Sbjct: 172 EAGERYPAIPLFLQPGNHTPPPPDDDDARIDIDGVMDRMHWLVEKVTADRWYAPRVLPQL 231 Query: 205 H 205 H Sbjct: 232 H 232 >gi|262368582|ref|ZP_06061911.1| radical SAM domain-containing protein [Acinetobacter johnsonii SH046] gi|262316260|gb|EEY97298.1| radical SAM domain-containing protein [Acinetobacter johnsonii SH046] Length = 236 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 96/238 (40%), Gaps = 59/238 (24%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE +G VF R +GC L +C +CDT + G Sbjct: 18 LRITEIFYSLQGEANTSGLPTVFIRLTGCPL-----------RCTYCDTTYSF---EGGE 63 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R ++DQ+ T + + Y +TGGEPL Q + +PL+Q L G E+++ET+G + Sbjct: 64 RQSLDQIIQ------TTLDFKTPYVCVTGGEPLAQPNALPLMQRLADLGCEVSLETSGAL 117 Query: 123 EPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVN-VSPENYIGF------DFERFS 172 + + V P+ DLK E+ + + ++ ++ + I F D+E Sbjct: 118 DVSK------VDPRVSKVLDLKTPTSGEVARNLLSNLDHLTQHDQIKFVICNREDYEWSK 171 Query: 173 LQPMDGPFLEE----------------------NTNLAISYCFQNPKWRLSVQTHKFI 208 Q D E+ +LA + +Q HK + Sbjct: 172 QQVEDYKLNEKVSTVWFSPAFAVEKGAARLPQLARDLAQWILEDHLPVCFQLQLHKLL 229 >gi|325107837|ref|YP_004268905.1| radical SAM protein [Planctomyces brasiliensis DSM 5305] gi|324968105|gb|ADY58883.1| Radical SAM domain protein [Planctomyces brasiliensis DSM 5305] Length = 241 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 19/143 (13%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF ++QGEG + G +VF R SGCNL +C FCDT + +G Sbjct: 18 ISEIFASIQGEGCYTGTPSVFVRTSGCNL-----------RCHFCDTPYASW-NPEGETL 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEP 124 ++ + + E W + VLTGGEP++ + L AL ++ I +ET GT+ Sbjct: 66 SIADIVARVNEWW------HPHVVLTGGEPMMVRDLAELTSALKRQDRFITIETAGTVYQ 119 Query: 125 PQGIDWICVSPKAGCDLKIKGGQ 147 D + +SPK Sbjct: 120 DIEADLMSISPKRANSTPTDHPD 142 >gi|255320799|ref|ZP_05361974.1| organic radical activating enzyme [Acinetobacter radioresistens SK82] gi|255302176|gb|EET81418.1| organic radical activating enzyme [Acinetobacter radioresistens SK82] Length = 236 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 84/238 (35%), Gaps = 59/238 (24%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE AG VF R +GC L +C +CDT + G Sbjct: 18 LRITEIFYSLQGEANAAGLPTVFIRLTGCPL-----------RCTYCDTTYSF---EGGV 63 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R +++++ Y +TGGEPL Q + + L+Q L G ++++ET+G + Sbjct: 64 RQSLEEIIA------TARSYNTPYICVTGGEPLAQPNCLVLLQRLCDLGHKVSLETSGAL 117 Query: 123 EPPQGIDWICVSPKAG--CDLKIKGGQEL-----------------KLVFPQVNV---SP 160 + + V P+ DLK E+ K V + + Sbjct: 118 DVSK------VDPRVSKVLDLKTPNSGEVTRNLMSNLEFLTSNDQIKFVICNRDDYQWAK 171 Query: 161 ENYIGFDFER----FSLQPMDGPFLEENT------NLAISYCFQNPKWRLSVQTHKFI 208 E + E+ P LA R +Q HK + Sbjct: 172 EQLALYSLEQKVSTVWFSPAFAVEKGAAQLPKLARELAQWILDDQLPVRFQLQLHKLL 229 >gi|262379425|ref|ZP_06072581.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Acinetobacter radioresistens SH164] gi|262298882|gb|EEY86795.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Acinetobacter radioresistens SH164] Length = 236 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 84/238 (35%), Gaps = 59/238 (24%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE AG VF R +GC L +C +CDT + G Sbjct: 18 LRITEIFYSLQGEANAAGLPTVFIRLTGCPL-----------RCTYCDTTYSF---EGGV 63 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R +++++ Y +TGGEPL Q + + L+Q L G ++++ET+G + Sbjct: 64 RQSLEEIIA------TARSYNTPYICVTGGEPLAQPNCLVLLQRLCDLGHKVSLETSGAL 117 Query: 123 EPPQGIDWICVSPKAG--CDLKIKGGQEL-----------------KLVFPQVNV---SP 160 + + V P+ DLK E+ K V + + Sbjct: 118 DVSK------VDPRVSKVLDLKTPSSGEVTRNLMSNLEFLTSNDQIKFVICNRDDYQWAK 171 Query: 161 ENYIGFDFER----FSLQPMDGPFLEENT------NLAISYCFQNPKWRLSVQTHKFI 208 E + E+ P LA R +Q HK + Sbjct: 172 EQLALYSLEQKVSTVWFSPAFAVEKGAAQLPKLARELAQWILDDQLPVRFQLQLHKLL 229 >gi|307594720|ref|YP_003901037.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307549921|gb|ADN49986.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429] Length = 220 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 58/198 (29%), Positives = 87/198 (43%), Gaps = 43/198 (21%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK + EIF + QGEG +AGR AVF R + CNL +C +CDT + GT Sbjct: 1 MKSVRVIEIFKSWQGEGPNAGREAVFLRLALCNL-----------RCSWCDTKYSWFGGT 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVET 118 + ++ + E + R+ V+TGGEPLL + L++ + +GF + VET Sbjct: 50 EMNVHD-------VYEVLMKTAGGVRHLVVTGGEPLLWSRELLQLLRFIRAQGFFVEVET 102 Query: 119 NGTIEPPQGIDWI---CVSPKAGC---------------DLKIKGGQELKLVFPQVNVSP 160 NGT+ P + ++++ VSPK D + G K V + Sbjct: 103 NGTLRPGELVNYVDEFNVSPKLSNSGVSVRVRVNELAIRDFVMSGKAIFKFVVDKPGDVD 162 Query: 161 E-----NYIGFDFERFSL 173 E N G +R L Sbjct: 163 EVLWFINKFGIPRDRVYL 180 >gi|258516745|ref|YP_003192967.1| Radical SAM domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257780450|gb|ACV64344.1| Radical SAM domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 211 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 92/227 (40%), Gaps = 48/227 (21%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF +LQGEG AG VF R +GCNL +C +CDT + +G Sbjct: 2 KVNEIFYSLQGEGITAGYPTVFIRLTGCNL-----------RCLYCDTVYAY---EEGQE 47 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 +V +AD + E Y +TGGEPL Q + + + +ETNG++ Sbjct: 48 MSVKDVADRVHE------YGAHYVCITGGEPLQQKAELKLLLSLLNRYTVTIETNGSLSL 101 Query: 125 PQ--------GIDWICVSPKAGCDLK--------IKGGQELKLVFPQVNVSPENYIGFDF 168 +D P +G L ++ E+K + + + ++ Sbjct: 102 EDLSFNYCHFAMDIKT--PGSGMHLYNDFSNIEFLRSKDEIKFII--GSRTDYDFARGII 157 Query: 169 ERFSL-QPM----DGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 E++ L Q + F E LA + ++ R+ +Q HK+I Sbjct: 158 EKYKLAQKVIVTFSPVFGLEPRFLA-QWVLEDKLFFVRVQLQIHKYI 203 >gi|157273449|gb|ABV27348.1| radical SAM domain protein [Candidatus Chloracidobacterium thermophilum] Length = 210 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 56/223 (25%), Positives = 90/223 (40%), Gaps = 41/223 (18%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF ++QGE +AG F R +GC+L +C +CD+++ GT Sbjct: 2 RITEIFFSIQGESSYAGLPCAFVRTTGCDL-----------RCTWCDSEYTFTGGTH--- 47 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 +V+++ + + R LTGGEPLLQ D+ L + L + G+ + +ET G + Sbjct: 48 MSVEEILERVRA------YPTRLVELTGGEPLLQKDIYELSERLLEEGYTVLIETGGHRD 101 Query: 124 PPQG-------IDWICVSPKAGCDLK--------IKGGQELKLVFPQVNV---SPENYIG 165 + +D C P +G K I E+K V +N + E Sbjct: 102 VSRLDPRIVKILDIKC--PGSGMVEKNLWSNLDYITRRDEVKFVLADLNDYFWAREILRI 159 Query: 166 FDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + E+ + F E + + R Q HK I Sbjct: 160 YRLEQRTNVLFSTVFGVERRPIVERILADGLQVRFQTQLHKLI 202 >gi|119871554|ref|YP_929561.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM 4184] gi|119672962|gb|ABL87218.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184] Length = 216 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 41/200 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK + + EIF +LQGEG + G+ AVF R +GC +CR+CDT + Sbjct: 1 MK-FRVVEIFASLQGEGVNLGKPAVFIRLAGCP-----------IRCRYCDTKYSW-DPL 47 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119 G + +++ G + V+TGGEPL+ ++ L L + G + VET+ Sbjct: 48 GGVEIDAEEVVQRAAAYGQLG-----HVVITGGEPLIWRNLHELACPLRRLG-TVEVETS 101 Query: 120 GTIEPPQ----GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175 G P +D+ VSPK + + L+ P SP+ + F Sbjct: 102 GVYPPTPQLDACVDFYDVSPK------LSNARVDALLHPHYPRSPKAWFKFV-------- 147 Query: 176 MDGPFLEENTNLAISYCFQN 195 EE+ A+ Y ++ Sbjct: 148 ---VGGEEDVEEAVRYVEKH 164 >gi|124027076|ref|YP_001012396.1| organic radical activating protein NrdG [Hyperthermus butylicus DSM 5456] gi|123977770|gb|ABM80051.1| Organic radical activating enzyme, NrdG [Hyperthermus butylicus DSM 5456] Length = 235 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 26/152 (17%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + + E+F ++QGEG G +VF R +GCNL +C FCDT + Sbjct: 14 TVLRVVEVFASIQGEGPFTGTYSVFVRLAGCNL-----------RCPFCDTRYAWSL-EA 61 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETN 119 G V++L + I E V+TGGEPLLQ L++ L G + +ETN Sbjct: 62 GKPLGVEELVEEIAR------YEPSLVVITGGEPLLQRHPLNSLVEGLESLGLRVQLETN 115 Query: 120 GTIEPPQGIDWI-----CVSPKAGCDLKIKGG 146 G + P + + VSPK +++ G Sbjct: 116 GILPAPARDEQLWRVYHVVSPK-DVPVRVPGA 146 >gi|303242851|ref|ZP_07329315.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] gi|302589597|gb|EFL59381.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] Length = 209 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 88/235 (37%), Gaps = 68/235 (28%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIFL++QGE G +F RF+GCNL +C +CDT + G + Y Sbjct: 3 VNEIFLSIQGESISTGFPTIFVRFTGCNL-----------RCCYCDTTYAYEDGKEMSPY 51 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP 124 V + + +TGGEPLLQ D+ L++ L + + +ETNG + Sbjct: 52 EVFE---------EVKRFHYKRVCITGGEPLLQKDLNELLRLLGD--YAVTIETNGAVPI 100 Query: 125 P-----QGIDWICVSPKAGCDLKIKGG-----------------QELKLVFPQVN----- 157 +G W+ D+K+ E+K V N Sbjct: 101 EDITLCEGHSWV-------MDMKVPSSGCSNQMVLDNFRYLRDKDEIKFVIGDRNDYDWA 153 Query: 158 ---VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFI 208 + +Y G + P+ G N A+S+ R VQ HK I Sbjct: 154 KGIIKNHHYKG----TITFSPVYGRI---NCEDAVSWILADRLDVRFQVQLHKII 201 >gi|71065297|ref|YP_264024.1| radical activating enzyme [Psychrobacter arcticus 273-4] gi|71038282|gb|AAZ18590.1| probable radical activating enzyme [Psychrobacter arcticus 273-4] Length = 244 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 86/242 (35%), Gaps = 61/242 (25%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + EIF +LQGE +G +F R +GC L +C +CDT++ + G Sbjct: 20 LRLTEIFYSLQGEALTSGLPTIFVRLTGCPL-----------RCVYCDTEYAF---SGGE 65 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R +++ + I + LTGGEPL Q + + L++ L G+EI++ET G + Sbjct: 66 RQSLETMMATI------ASFPCKRICLTGGEPLAQPNAIELMKRLLNDGYEISLETAGAL 119 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLV----------FPQVNVSPENYIGFDFERFS 172 + + DLK E+ Q+ N +D+ + Sbjct: 120 TVEN----VPPTVSKVMDLKTPSSGEVDKNLWSNLDYLTQHDQIKFVIMNRADYDWAKAK 175 Query: 173 L--------------QPMDGPFLEE------------NTNLAISYCFQNPKWRLSVQTHK 206 L PM E+ LA R +Q HK Sbjct: 176 LVEYKLNELVGTVWFSPMFNVAHEDTVNDNSPEVPVLARELAEWMLADALPVRFQLQLHK 235 Query: 207 FI 208 I Sbjct: 236 II 237 >gi|164686487|ref|ZP_02210515.1| hypothetical protein CLOBAR_00052 [Clostridium bartlettii DSM 16795] gi|164604498|gb|EDQ97963.1| hypothetical protein CLOBAR_00052 [Clostridium bartlettii DSM 16795] Length = 220 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 88/229 (38%), Gaps = 40/229 (17%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +++I E F+++ GEG AG +A F RF GCNL +C +CDT + + Sbjct: 1 MFNIIEKFVSIDGEGPTAGELATFIRFQGCNL-----------RCSWCDTTYSFDKSEIT 49 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN--KRGFEIAVETNG 120 + ++ D I+ ++ LTGGEPL Q ++ + +L + + +ETNG Sbjct: 50 EVLSAQEIYDYIKSTGVS------NVTLTGGEPLFQENINEVLSLLNDDKNLVVHIETNG 103 Query: 121 TIEPPQG----------IDWICVSPKAGCDLKIKGGQEL------KLVFPQVNVSPENYI 164 I+ +D+ S +K+ + K V E Y Sbjct: 104 AIDILPFKEKYPNIIFILDYKLASSNMTHLMKLDNLNYVTNKDVYKFVLGSDEDLQEAYE 163 Query: 165 ---GFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 F+ L F + + + K RL VQ HK I Sbjct: 164 LITKFNLTNKCLVYFSPVFSAIKLEDIVEFMKEKNLNKVRLQVQLHKVI 212 >gi|299769138|ref|YP_003731164.1| Radical SAM superfamily protein [Acinetobacter sp. DR1] gi|298699226|gb|ADI89791.1| Radical SAM superfamily protein [Acinetobacter sp. DR1] Length = 236 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 59/238 (24%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE +G VF R +GC L +C +CDT + G Sbjct: 18 LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R++++ + + + + Y +TGGEPL Q + + L+Q L + GF++++ET+G + Sbjct: 64 RFSLEHIIETATQ------YQTPYICVTGGEPLAQPNCLILLQRLCEAGFDVSLETSGAL 117 Query: 123 EPPQGIDWICVSPKAGCDLKIK-GGQELKLVFPQVN-VSPENYIGF-------------D 167 + + + DLK G+E + + ++ ++ + I F Sbjct: 118 DVSKVDSRVS----KVLDLKTPTSGEEHRNLISNLDHLTAHDQIKFVICNREDYEWSKQQ 173 Query: 168 FERFSL---------QP--------MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 E++ L P + P L + LA R +Q HK + Sbjct: 174 VEKYQLHKKVSTVWFSPAFAVEKGAVSLPRLARD--LAQWILDDKLLVRFQLQLHKLL 229 >gi|327189839|gb|EGE56977.1| organic-radical-activating protein [Rhizobium etli CNPAF512] Length = 242 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 83/241 (34%), Gaps = 49/241 (20%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + + EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 4 ESIRVSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDSLHA-VDSA 51 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 ++ + +E L+GG P +Q PLI+ + +G+ A+ET G Sbjct: 52 FREQWIPMSTEAIWQEVTKLSAGRPMTVSLSGGNPAIQPLGPLIEFGHSQGYRFALETQG 111 Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELK----------------LVFPQVNVSPEN 162 +I + +D + +SPK + ++ +VF + + Sbjct: 112 SIARNWFRDLDVLVLSPKPPSSGMLTDWDQVDNCLRLAAGGPEIALKIVVFDDDDYAFAR 171 Query: 163 YIGFDFERF--SLQPMDGPFLEENTNLA---ISYCFQNPKW-------------RLSVQT 204 G + LQP + + + A I W R+ Q Sbjct: 172 EAGRRYPYIPLYLQPGNHTPPPPDDDDARIDIDGVMDRMHWLVEKVTADGWFAPRVLPQL 231 Query: 205 H 205 H Sbjct: 232 H 232 >gi|307943818|ref|ZP_07659162.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Roseibium sp. TrichSKD4] gi|307773448|gb|EFO32665.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Roseibium sp. TrichSKD4] Length = 247 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 79/221 (35%), Gaps = 36/221 (16%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 K I EIF T+QGEG G+ VF R GC+ +C +CDT + Sbjct: 9 KSIRISEIFGPTIQGEGALVGKPTVFVRTGGCDY-----------RCSWCDTLHA-VDAE 56 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + A++ + L+GG P +Q LI +G+ A+ET G Sbjct: 57 YRHDWTPMSAAEIFTKVEELSGGIPLTVSLSGGNPAIQPLASLITLGKAKGYAFALETQG 116 Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKL------VFPQVNVSPE--NYIGFDFER 170 ++ + +D + +SPK L V Q+ + + + F R Sbjct: 117 SVVKDWFAELDVLTLSPKPPSSGMKTDLAALDACVSAGGVATQIALKFAVMDEADYAFAR 176 Query: 171 ----------FSLQPMDGPFLEENTNLA---ISYCFQNPKW 198 LQP++ +T A +S +W Sbjct: 177 QISTRHPALPVYLQPVNHTPPPPDTEDADIDMSGIMDRMRW 217 >gi|251798291|ref|YP_003013022.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Paenibacillus sp. JDR-2] gi|247545917|gb|ACT02936.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Paenibacillus sp. JDR-2] Length = 242 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 90/241 (37%), Gaps = 49/241 (20%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 K + EIF T+QGEG G+ +F R +GC+ C +CD+ F GT Sbjct: 4 KRIPVMEIFGPTVQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGT 51 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119 + ++++ E G + L+GG P LL+ L+ AL++ G +AVET Sbjct: 52 GKDDTRMLTASEIVGELRELGGNTFSHVTLSGGNPALLKNADELVDALHRDGVRVAVETQ 111 Query: 120 GTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-----------VNVSPENYIGF 166 G+ + ID + +SPK + L + + V V E + + Sbjct: 112 GSRWQDWLLAIDELTLSPKPPSSGMTTNWEVLDEIVARLAGGSNPFSLKVVVFDEQDLAY 171 Query: 167 DFE--------RFSLQP-----MDGPFLEENTNLA------ISYCFQNP---KWRLSVQT 204 + F +Q ++G + L I + R+ Q Sbjct: 172 AAKVHNRYPGVTFFVQTGNDDLIEGDNGKLAAKLIERYEWLIDQVMKREDMTNVRVLPQL 231 Query: 205 H 205 H Sbjct: 232 H 232 >gi|190893559|ref|YP_001980101.1| organic-radical-activating protein [Rhizobium etli CIAT 652] gi|190698838|gb|ACE92923.1| organic-radical-activating protein [Rhizobium etli CIAT 652] Length = 242 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 83/241 (34%), Gaps = 49/241 (20%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + + EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 4 ETIRVSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDSLHA-VDSA 51 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 ++ + +E L+GG P +Q PLI+ + +G+ A+ET G Sbjct: 52 FRDQWIPMSTEAIWQEVTKLSAGRPMTVSLSGGNPAIQPLGPLIELGHSQGYRFALETQG 111 Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELK----------------LVFPQVNVSPEN 162 ++ + +D + +SPK + ++ +VF + + Sbjct: 112 SVARNWFRDLDVLVLSPKPPSSGMLTDWDQVDNCLRLAAGGPEIALKIVVFDDDDYAFAQ 171 Query: 163 YIGFDFERF--SLQPMDGPFLEENTNLA---ISYCFQNPKW-------------RLSVQT 204 G + LQP + + + A I W R+ Q Sbjct: 172 EAGQRYPYIPLYLQPGNHTPPPPDDDDARIDIDGVMDRMHWLVEKVTADGWFAPRVLPQL 231 Query: 205 H 205 H Sbjct: 232 H 232 >gi|302342762|ref|YP_003807291.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075] gi|301639375|gb|ADK84697.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075] Length = 212 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 57/228 (25%), Positives = 88/228 (38%), Gaps = 46/228 (20%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + EIF ++QGEG AG F R +GC L +C +CDT + G Sbjct: 1 MLEVCEIFQSIQGEGVDAGLPCAFVRLAGCPL-----------RCAWCDTAYAWQGG--- 46 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 L +++ E LTGGEPL Q + P L+ AL G + VET+G Sbjct: 47 ---AAMSLPEVLARALA---FELELVELTGGEPLAQAETPALLGALCDAGRRVLVETSGA 100 Query: 122 IE-------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174 ++ +D C P +G +++ L ++ P V D+E F+ + Sbjct: 101 LDIAVVDERVHLIMDVKC--PGSGMSERMRWRN-LDILPPGAQVKFVLADRADYE-FARR 156 Query: 175 PMDGPFL-EENTNL------------AISYCFQ-NPKWRLSVQTHKFI 208 +D L L + + R +Q HKFI Sbjct: 157 VIDAHGLGHRARPLLSVVHGRLAPAKVVEWMLADRLPARFQLQLHKFI 204 >gi|261405277|ref|YP_003241518.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Paenibacillus sp. Y412MC10] gi|261281740|gb|ACX63711.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Paenibacillus sp. Y412MC10] Length = 243 Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 16/161 (9%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG GR +F R +GC+ +C +CD+ F G+ Sbjct: 5 IPVMEIFGPTVQGEGMVVGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAK 52 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121 ++ ++ +E + G + + L+GG P LL L+ L++ G +AVET G+ Sbjct: 53 DSISLLSADEIWQELYRLGGERFDHVTLSGGNPALLPQLGALVDELHRHGITVAVETQGS 112 Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP 160 + ID + +SPK +L + +++ P Sbjct: 113 RWQDWLNHIDEVTISPKPPSSGMDTDWGKLDDIVSRLSARP 153 >gi|292655864|ref|YP_003535761.1| radical SAM protein [Haloferax volcanii DS2] gi|291371719|gb|ADE03946.1| radical SAM protein, putative (TBD) [Haloferax volcanii DS2] Length = 257 Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 20/142 (14%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I E+F +LQGEG AG + F R SGCNL +C FCD+ + T Sbjct: 19 LPINELFASLQGEGKLAGVPSTFVRTSGCNL-----------RCWFCDSFHTSWEPTH-A 66 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 ++D++ +E + V+TGGEPL+ + L+ AL + + VETNGT+ Sbjct: 67 WLSLDEIVAEVESL------SPEHVVVTGGEPLVHDETDALLSAL-DDDYHLTVETNGTL 119 Query: 123 EPPQGIDWICVSPKAGCDLKIK 144 E +D +SPK Sbjct: 120 ETDAPVDLASISPKLASSTPTP 141 >gi|282889934|ref|ZP_06298469.1| hypothetical protein pah_c008o017 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500127|gb|EFB42411.1| hypothetical protein pah_c008o017 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 224 Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 59/230 (25%), Positives = 101/230 (43%), Gaps = 51/230 (22%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 +I EIF ++QGE AG F R + CNL +C +CDT + +G Sbjct: 13 LNIIEIFSSVQGETSFAGLPTAFIRLAACNL-----------RCSWCDTSYSFG---RGD 58 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 + + Q+ + ++E R +TGGEPLLQ +V PL+ L + + ++VET G++ Sbjct: 59 VFGLPQILEKVDEFG------CRNVCVTGGEPLLQKNVYPLMTQLCDKNYIVSVETGGSL 112 Query: 123 EPPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQVN-VSPENYIGFDF---------- 168 + + P+ L IK + +P ++ + PE+ + F Sbjct: 113 SIEE------IDPRVHIILDIKCPDSNMSDRNFWPNLSAIRPEDEVKFVINGYQDYLYAK 166 Query: 169 ---ERFSL----QPM--DGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFI 208 E+F L P+ F ++ +++ Q RL++Q HKFI Sbjct: 167 EVCEKFQLFSRKIPVLLSPVFDVLDSKELVNWVLQDKLPVRLNMQLHKFI 216 >gi|296122194|ref|YP_003629972.1| radical SAM protein [Planctomyces limnophilus DSM 3776] gi|296014534|gb|ADG67773.1| Radical SAM domain protein [Planctomyces limnophilus DSM 3776] Length = 260 Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 62/138 (44%), Gaps = 19/138 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I E FL++QGEG G + F R +GCNL +C FCDT + G Sbjct: 21 LRIAETFLSVQGEGALTGVRSFFIRTTGCNL-----------RCWFCDTPYTSWTAE-GN 68 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 +D+L + +LTGGEPLLQ + L AL G I VET GT+ Sbjct: 69 WQTIDELLAQATASG------AEHVILTGGEPLLQPAIVELSHALKAAGLHITVETAGTV 122 Query: 123 EPPQGIDWICVSPKAGCD 140 + P D + +SPK Sbjct: 123 DRPVMADLMSISPKLANS 140 >gi|281358520|ref|ZP_06245000.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548] gi|281315002|gb|EFA99035.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548] Length = 214 Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 95/230 (41%), Gaps = 47/230 (20%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + E FL+LQGE HAGR +F R +GCNL C +CDT + G Sbjct: 1 MPRLVEAFLSLQGESTHAGRRCIFLRLAGCNL-----------DCNYCDTMYA-HSPESG 48 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 +VD+L R +TGGEPLL + P L + L GFE+ +ETNG+ Sbjct: 49 EERSVDELVAA------AASFPCRLVEITGGEPLLTPETPELCRRLLALGFEVLIETNGS 102 Query: 122 IEPPQGIDWICVSPKAGCDLKIKG-GQELKLVFPQ-VNVSPENYIGF------DFERFSL 173 + + + D K+ G G + ++ + P + + F DF+ F+L Sbjct: 103 LPIAPLPAEV----RKILDCKLPGSGMSNRNLYDNYALLQPHDEVKFVVSSREDFD-FAL 157 Query: 174 QPMDGPFLEENTN-LAISYCFQN------PKW--------RLSVQTHKFI 208 + L T L S + +W R+ +Q HK I Sbjct: 158 DVIRRYDLPGKTANLLFSPVWGRVGFADLARWIVDAGAPGRMQLQLHKLI 207 >gi|291550955|emb|CBL27217.1| Organic radical activating enzymes [Ruminococcus torques L2-14] Length = 216 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 87/230 (37%), Gaps = 49/230 (21%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + E F ++ GEG AG +AVF RF GCNL +C +CDT + + Sbjct: 2 KVVEKFTSINGEGTRAGELAVFIRFKGCNL-----------RCSYCDTMWANEPDCQYKE 50 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 +++ + + E I R LTGGEPLLQ D+ LI L + G ++ +ETNG ++ Sbjct: 51 ETPEEILNYVLETGI------RNVTLTGGEPLLQKDIRELIHLLLQAGLQVEIETNGAVD 104 Query: 124 PPQGIDWICVSPKAGCDLKIKGG-----------------QELKLV------FPQVNVSP 160 + P D K+ +K V + Sbjct: 105 LSAFCEE---RPVFTMDYKLPSSGCEEYMITENMELLGKDDTVKFVCGSQEDLLKALDVI 161 Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 + Y + L P+ G + + ++ L +Q HK I Sbjct: 162 QTYNLTNRCHVYLSPVFGSIEP---VQIVEFMLKHQLNGVCLQIQMHKVI 208 >gi|237737359|ref|ZP_04567840.1| radical SAM domain-containing protein [Fusobacterium mortiferum ATCC 9817] gi|229421221|gb|EEO36268.1| radical SAM domain-containing protein [Fusobacterium mortiferum ATCC 9817] Length = 222 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 56/236 (23%), Positives = 86/236 (36%), Gaps = 50/236 (21%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + + EIF ++ GEG G++A+F R CNL C +CDT + Sbjct: 1 MANFKVVEIFESINGEGRRVGQLAIFIRLQKCNL-----------NCSYCDTRWANGDDA 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG----FEIAV 116 + D++ D I + I + LTGGEPLL DV ++ L K G + + Sbjct: 50 PYTLMSEDKIYDRILKSGI------KNITLTGGEPLLHKDVEIL--LEKIGENPNLSLEI 101 Query: 117 ETNGTI----------EPPQGIDWICVSPKAGCDLKIKG------GQELKLVF------P 154 ETNG+I P +D+ S K + + +K V Sbjct: 102 ETNGSIELEKFSKLKNPPLFTMDYKLPSSKMENKMCLDNFKYLTLKDTVKFVVGTIEDLK 161 Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 + E Y P+ + + +N L +Q HKFI Sbjct: 162 KAKEIIERYSLIGKCAVYFSPVFNSIDP---IEIVKFMKENRLNGVNLQLQIHKFI 214 >gi|56476931|ref|YP_158520.1| radical activating enzyme [Aromatoleum aromaticum EbN1] gi|56312974|emb|CAI07619.1| SAM radical family enzyme similar to queE gene product; involved in queuosine biosynthesis [Aromatoleum aromaticum EbN1] Length = 221 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 83/230 (36%), Gaps = 54/230 (23%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF +LQGE G VF R +GC L +C +CDT++ G Sbjct: 13 RLTEIFASLQGESTRVGLPTVFVRLTGCPL-----------RCVWCDTEYAFQGGES--- 58 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 +A ++EE G + +TGGEPL Q + L+ AL G +++ET+G + Sbjct: 59 ---RSIASIVEEVLGHG---IEHVCVTGGEPLAQKSCLALLAALCDAGLSVSLETSGAL- 111 Query: 124 PPQGIDWICVSPKAG--CDLKIKGG-----------------QELKLV------FPQVNV 158 D V P+ DLK G E+K+V + Sbjct: 112 -----DIAAVDPRVSRVMDLKAPGSGEVARNRWDNLARLNERDEVKIVLADRLDYEWAVQ 166 Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + L P+ G LA R +Q HK + Sbjct: 167 CLAEHRLAQRCTVLLSPVQGKLDPA--QLAEWIVRDRLPVRFQLQLHKIL 214 >gi|262278177|ref|ZP_06055962.1| radical SAM superfamily protein [Acinetobacter calcoaceticus RUH2202] gi|262258528|gb|EEY77261.1| radical SAM superfamily protein [Acinetobacter calcoaceticus RUH2202] Length = 236 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 93/236 (39%), Gaps = 55/236 (23%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF +LQGE +G VF R +GC L +C +CDT + G Sbjct: 18 LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 R++++ + + + + Y +TGGEPL Q + + L+Q L + GF++++ET+G + Sbjct: 64 RFSLEHIIETATQ------FQTPYICVTGGEPLAQPNCLILLQRLCEAGFDVSLETSGAL 117 Query: 123 EPPQGIDWICVSPKAGCDLKIK-GGQELKLVFPQVN-VSPENYIGF------DFE----- 169 + + + DLK G+E + + ++ ++ + I F D+E Sbjct: 118 DVSKVDSRVS----KVLDLKTPTSGEEHRNLISNIDHLTAHDQIKFVICNREDYEWSKQQ 173 Query: 170 -----------RFSLQPMDGPFLEE------NTNLAISYCFQNPKWRLSVQTHKFI 208 P +LA R +Q HK + Sbjct: 174 VEIYQLHKKVSTVWFSPAFAVEKGAVGLPRLARDLAQWILDDKLPVRFQLQLHKLL 229 >gi|325678494|ref|ZP_08158109.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Ruminococcus albus 8] gi|324109805|gb|EGC04006.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Ruminococcus albus 8] Length = 222 Score = 140 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 43/231 (18%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 +L+S+ E F+++ GEG AG +A+F RF+GC+L +C +CDT + + Sbjct: 3 QLFSLAEHFISINGEGQRAGELALFLRFTGCDL-----------RCVWCDTLWAVPKDAP 51 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 ++ L D+ + G R LTGGEPL+Q + L +AL G + +ETNG Sbjct: 52 HKDKDLRSLLDIARDAVSHG---VRNVTLTGGEPLMQKGIVRLFEALLDMGLRVEIETNG 108 Query: 121 TIEPPQGIDWICVSPKAGCDLKIK-GGQELKLVFPQVNVSPENY-IGF------------ 166 ++ I P D K+ G E +++ +++ N + F Sbjct: 109 SVALAPFIRDK--RPDFNMDYKLPDSGMESRMIIDNISLLQANDTLKFVCASHRDLLRAY 166 Query: 167 -------DFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 + P+ G + + + + + RL +Q HKFI Sbjct: 167 EVIQQTKPKCKVYFSPVFGKIEPADM---VEFIKEKGLGEVRLQLQLHKFI 214 >gi|253576603|ref|ZP_04853931.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Paenibacillus sp. oral taxon 786 str. D14] gi|251844017|gb|EES72037.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Paenibacillus sp. oral taxon 786 str. D14] Length = 253 Score = 140 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 80/241 (33%), Gaps = 51/241 (21%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G+ +F R +GC+ +C +CD+ F G+ Sbjct: 15 IPVMEIFGPTVQGEGMVIGQKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAK 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121 A+++ E G + L+GG P LL L++ L+ G +AVET G+ Sbjct: 63 EMIRRLTPAEILGELRDIGGDRFSHVTLSGGNPALLPQLASLVELLHAEGITVAVETQGS 122 Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE----------------NY 163 + +D + +SPK L + ++ P Y Sbjct: 123 RWQDWLAEVDQVTLSPKPPSSGMDTNWDVLDDIVARLAARPHPLAVSLKVVVFDDDDLAY 182 Query: 164 IGFDFERFSLQPMDG----------------PFLEENTNLAISYCFQNP---KWRLSVQT 204 R+ PM L I P R+ Q Sbjct: 183 AKRVHTRYPNVPMYVQVGNPDVKRMDIQEHASDLLRRYEALIDKVMATPDLNNVRVLPQL 242 Query: 205 H 205 H Sbjct: 243 H 243 >gi|297530832|ref|YP_003672107.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. C56-T3] gi|297254084|gb|ADI27530.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. C56-T3] Length = 244 Score = 140 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 16/162 (9%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + + EIF T+QGEG G+ +F R +GC+ +CR+CD+ F G+ Sbjct: 3 RTIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSAFTW-DGS 50 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETN 119 ++ G + R+ ++GG PLL LI L+++G +AVET Sbjct: 51 AKDEIEQLTADEIWRRLEAIGGRRFRHVTISGGNPLLIAALGELIALLHEKGMRVAVETQ 110 Query: 120 GTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159 G+ + ID + +SPK L + ++ Sbjct: 111 GSRWQDWLLDIDDVTLSPKPPSSGMNTDWSALDQIIERLQAD 152 >gi|118592129|ref|ZP_01549523.1| organic-radical-activating protein [Stappia aggregata IAM 12614] gi|118435425|gb|EAV42072.1| organic-radical-activating protein [Stappia aggregata IAM 12614] Length = 242 Score = 140 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 79/219 (36%), Gaps = 36/219 (16%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G+ VF R GC+ +C +CDT + Sbjct: 6 IRVSEIFGPTIQGEGALIGQPTVFVRTGGCDY-----------RCSWCDTLHA-VDSAHR 53 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + ++ + I L+GG P +Q LI K G+ A+ET G++ Sbjct: 54 DEWCPMTPQAILMQVEILSGGNPLTVSLSGGNPAIQPLGGLITLGRKEGYRFALETQGSL 113 Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELK----------------LVFPQVNVSPENYI 164 + +D + +SPK Q L +VF + + + + Sbjct: 114 AKDWFADLDVLTLSPKPPSSGMTTDWQRLAECVEAAGPETQTVLKVVVFDEADYAFARDV 173 Query: 165 GFDFERF--SLQPMD-GPFLEENTNLAISY--CFQNPKW 198 + LQP + P +T+ I + +W Sbjct: 174 SDRYPHLSCFLQPGNHTPPAATDTDATIDMTGIMERMRW 212 >gi|260437277|ref|ZP_05791093.1| radical SAM domain protein [Butyrivibrio crossotus DSM 2876] gi|292810587|gb|EFF69792.1| radical SAM domain protein [Butyrivibrio crossotus DSM 2876] Length = 222 Score = 140 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 54/235 (22%), Positives = 93/235 (39%), Gaps = 48/235 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y + E F+++ GEG AG +A F R GCNL C +CDT + Sbjct: 1 MAEYKVVETFVSINGEGRKAGELAFFLRLKGCNL-----------DCSYCDTKWANKGDA 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE--IAVET 118 + +++ LI++ I R +TGGEPL + D+ ++ L E + +ET Sbjct: 50 SFEIMDENEIYGLIKKSGI------RNVTITGGEPLFRKDMAILLELLDNDRELSVEIET 103 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIK-----------------GGQELKLV---FPQVNV 158 NG+++ + +C + D K+ +K V + Sbjct: 104 NGSVDLKPYL-PVCKNISFTMDYKLPTSRMEEQMCLGNFEILRNIDTVKFVSGSIKDLEK 162 Query: 159 SPENYIGFDFE---RFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 + E +D + + P+ G + + + + K RL +Q HKFI Sbjct: 163 AEEIIQKYDLCKRTKVYISPVFGNIDPAD---IVEFMKERKMNKVRLQLQLHKFI 214 >gi|329925161|ref|ZP_08280104.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Paenibacillus sp. HGF5] gi|328939994|gb|EGG36327.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Paenibacillus sp. HGF5] Length = 264 Score = 140 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 16/161 (9%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG GR +F R +GC+ +C +CD+ F G+ Sbjct: 26 IPVMEIFGPTVQGEGMVVGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAK 73 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121 ++ ++ +E + G + + L+GG P LL L+ L++ G +AVET G+ Sbjct: 74 DSISLLSADEIWQELYRLGGERFDHVTLSGGNPALLPQLGALVDELHRYGITVAVETQGS 133 Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP 160 + ID + +SPK +L + +++ P Sbjct: 134 RWQDWLNHIDEVTISPKPPSSGMDTDWGKLDDIVSRLSARP 174 >gi|328953829|ref|YP_004371163.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109] gi|328454153|gb|AEB09982.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109] Length = 213 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 89/231 (38%), Gaps = 54/231 (23%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + E F+++ GE AG F R SGCNL +CR+CDT + +G + Sbjct: 3 LRVCETFISIMGEASFAGLPGFFIRLSGCNL-----------RCRYCDTTYAYAEGVE-- 49 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 LA L+ E +G R ++TGGEPLLQ + + L+ AL +RGF + +ETNG+ Sbjct: 50 ----RSLASLLGEAGASGY---RLVLVTGGEPLLQEECLVLLSALVERGFTVLLETNGSR 102 Query: 123 EPPQGIDWICVSPKAG--CDLKIKGG-----------------QELKLVFPQVNVSPENY 163 V P+ DLK G ELK V Sbjct: 103 PLEA------VDPRVHRIIDLKCPGSGMAQHNYLKNLDYLTEKDELKFVVSNRRDFDWAM 156 Query: 164 IGFDFERFS------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 R P+ G LA RL++Q HK+I Sbjct: 157 QVMAASRIWERCTVLFSPVFGLLPPS--ELAAWILATRLPLRLNLQLHKYI 205 >gi|261419199|ref|YP_003252881.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. Y412MC61] gi|319766015|ref|YP_004131516.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. Y412MC52] gi|261375656|gb|ACX78399.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. Y412MC61] gi|317110881|gb|ADU93373.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. Y412MC52] Length = 244 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 16/162 (9%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + + EIF T+QGEG G+ +F R +GC+ +CR+CD+ F G+ Sbjct: 3 RTIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSAFTW-DGS 50 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETN 119 ++ G + R+ ++GG PLL LI L+++G +AVET Sbjct: 51 AKDEIEQLTADEIWRRLEAIGGRRFRHVTISGGNPLLIAALGELIALLHEKGMRVAVETQ 110 Query: 120 GTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159 G+ + ID + +SPK L + ++ Sbjct: 111 GSRWQDWLLDIDDVTLSPKPPSSGMDTDWSALDQIIERLQAD 152 >gi|56419512|ref|YP_146830.1| coenzyme PQQ synthesis [Geobacillus kaustophilus HTA426] gi|56379354|dbj|BAD75262.1| coenzyme PQQ synthesis [Geobacillus kaustophilus HTA426] Length = 244 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 16/162 (9%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + + EIF T+QGEG G+ +F R +GC+ +CR+CD+ F G+ Sbjct: 3 RTIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSAFTW-DGS 50 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETN 119 ++ G + R+ ++GG PLL LI L+++G +AVET Sbjct: 51 AKDEIEQLTADEIWRRLEAIGGRRFRHVTISGGNPLLIAALGELIALLHEKGMRVAVETQ 110 Query: 120 GTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159 G+ + ID + +SPK L + ++ Sbjct: 111 GSRWQDWLLDIDDVTLSPKPPSSGMDTDWAALDQIIERLQAD 152 >gi|283853629|ref|ZP_06370864.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B] gi|283570991|gb|EFC19016.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B] Length = 211 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 61/228 (26%), Positives = 88/228 (38%), Gaps = 45/228 (19%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M L + EIF ++QGE AG F R SGCNL C +CDT + Sbjct: 1 MSL-RVHEIFASIQGESSFAGWPCAFLRLSGCNL-----------DCVWCDTRYA----- 43 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 + + + +G LTGGEPLL ++P L +AL G + VETN Sbjct: 44 -AASFVEMTVPEAAAALLASGL---PLVELTGGEPLLAPELPALARALLDAGATVLVETN 99 Query: 120 GTIEP----PQGI---DWICVSPKAGCDL--------KIKGGQELKLVFPQVN----VSP 160 G+ + P+ I D C P +G + +++ E+K V + Sbjct: 100 GSRDIAVLDPRAIAILDIKC--PGSGMEGRNDYRNLDRLRPRDEVKFVLAGRDDYRFALD 157 Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 +D L P+ G LA + RL +Q HK I Sbjct: 158 VAKRVWDRHTVHLSPVTGSLDPA--ELAGWMVADRVRARLGLQLHKTI 203 >gi|226314170|ref|YP_002774066.1| queuosine biosynthesis protein [Brevibacillus brevis NBRC 100599] gi|226097120|dbj|BAH45562.1| putative queuosine biosynthesis protein [Brevibacillus brevis NBRC 100599] Length = 239 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 81/220 (36%), Gaps = 36/220 (16%) Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + + EIF T+QGEG G+ +F R +GC+ +C +CD+ F G+ Sbjct: 1 MIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCNWCDSAFTW-DGSA 48 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 + EE G + ++GG P L + LI L + G AVET G Sbjct: 49 RDEIRQMSPEAVWEELTRLGGDRFSHVTISGGNPALLAGIGDLISLLKEHGIRTAVETQG 108 Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ----------VNVSPENYIGFDF 168 + ID I +SPK Q L + + + V + F + Sbjct: 109 SKWQAWLPLIDDITLSPKPPSSGMQTDFQALDRIVHELLDQKHPGLSLKVVVFDDADFAY 168 Query: 169 ER----------FSLQPMDGPFLEENTNLAISYCFQNPKW 198 R F LQP + + +T ++ +W Sbjct: 169 ARTIHQRFPGVPFYLQPGNSDLTDADTPSLRDKLLESFEW 208 >gi|15896859|ref|NP_350208.1| MoaA family Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824] gi|15026725|gb|AAK81548.1|AE007858_9 Fe-S oxidoreductase of MoaA family [Clostridium acetobutylicum ATCC 824] gi|325511033|gb|ADZ22669.1| Fe-S oxidoreductase of MoaA family [Clostridium acetobutylicum EA 2018] Length = 221 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 90/232 (38%), Gaps = 48/232 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + E F+++ GEG +G+++VF RF+GCNL C +CDT + + K Sbjct: 3 YKVVEKFVSINGEGLKSGQLSVFIRFAGCNL-----------NCNYCDTKWANEKDVKYT 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVETNGT 121 ++ I+E + + LTGGEPLLQ + L+ L + +ETNG+ Sbjct: 52 LMTEKEILSYIKETGV------KNVTLTGGEPLLQDGIVELLNLLSLDSTLRVEIETNGS 105 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGG-----------------QELKLVFP---QVNVSPE 161 + +++ P D K+ +K V + + + Sbjct: 106 VSLENFLNFKNA-PSFTMDYKLPDSSMENFMKTSNFKFLNKKDVIKFVVSSLKDLKKAMD 164 Query: 162 NYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 F+ + + P+ G E + + N L +Q HK I Sbjct: 165 IITEFNLSKKTNIYISPVFGRISPET---IVDFMKDNKLNDVTLQIQIHKII 213 >gi|241206476|ref|YP_002977572.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860366|gb|ACS58033.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 242 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 83/240 (34%), Gaps = 49/240 (20%) Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 5 TIRVSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDSLHA-VDSAF 52 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 ++ + + + L+GG P +Q PLI+ + RG+ A+ET G+ Sbjct: 53 RNQWIPMSTEAVWHKVTELSGGKPLTVSLSGGNPAIQPLRPLIELGHSRGYRFALETQGS 112 Query: 122 IE--PPQGIDWICVSPKAGCDLKIKGGQELK----------------LVFPQVNVSPENY 163 I + +D + VSPK + ++ +VF + Sbjct: 113 IAQSWFRDLDVLVVSPKPPSSGMLTDWDQVDNCLQLAAGGPEVALKIVVFDDADYEFAQQ 172 Query: 164 IGFDFERF--SLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQTH 205 G + + LQP + P ++ + I W R+ Q H Sbjct: 173 AGQRYPQIPLFLQPGNHTPPPPDNDDARIDIDGVMDRMHWLVERVTADQWFEVRVLPQLH 232 >gi|189219299|ref|YP_001939940.1| Organic radical activating enzyme [Methylacidiphilum infernorum V4] gi|189186157|gb|ACD83342.1| Organic radical activating enzyme [Methylacidiphilum infernorum V4] Length = 233 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 46/226 (20%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E+FL++QGE AG F R +GCNL +CR+CDT + + G Sbjct: 23 VNEMFLSIQGESTFAGYPCAFIRLTGCNL-----------RCRWCDTTYAF---SGGKLM 68 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + + D ++ + +TGGEPLLQ + + L+ L G+E+ +ET+G++ Sbjct: 69 PIRAVIDQVKA------YDVPLVEITGGEPLLQKNSLYLLTLLCDLGYEVLLETSGSLPV 122 Query: 125 PQG-------IDWICVSPKAGCDLKIKGG------QELKLV--------FPQVNVSPENY 163 + +D C S + ELK V + + ++ + Sbjct: 123 DRVDSRVHRIVDLKCPSSGQSEHNLLSNLDWLGKRDELKFVIADRKDYEWAKNKLTQGKH 182 Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFI 208 + + P+ G E + L + + K RL +Q HK+I Sbjct: 183 WRDKVKAITFSPVFG---EMDPQLLSQWILEDKLKVRLGLQIHKYI 225 >gi|310825117|ref|YP_003957475.1| radical sam domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309398189|gb|ADO75648.1| Radical SAM domain protein [Stigmatella aurantiaca DW4/3-1] Length = 230 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 54/224 (24%), Positives = 87/224 (38%), Gaps = 45/224 (20%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 +KEI+L++QGE HAG + F R +GC+L +C +CD++F GT R Sbjct: 21 VKEIYLSVQGESSHAGLLCAFVRLTGCHL-----------RCTYCDSEFAFRGGT---RM 66 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE- 123 Q+ + ++ +TGGEPLLQ V PL++AL G + +ET+G I+ Sbjct: 67 PNAQVVEQVKAL------RTPMVEITGGEPLLQPGVYPLMEALLAEGLTVLLETSGAIDV 120 Query: 124 --PPQG----IDWICVSPKAGCDLKIKGG------QELKLV--------FPQVNVSPENY 163 P +D S ++ E+K V + + ++ Sbjct: 121 RLVPPAVHKIVDMKTPSSGESDRNDVRNFSSMNARDEMKFVIGSREDYEWSKALIAEHGL 180 Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207 F + LA R +Q HK+ Sbjct: 181 ATKPFAMLF-STVFDKLHPR--ELAEWVIADRLPVRFQLQMHKY 221 >gi|322805868|emb|CBZ03433.1| queuosine Biosynthesis QueE Radical SAM [Clostridium botulinum H04402 065] Length = 221 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 94/232 (40%), Gaps = 48/232 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + + E +++ GEG G++A+F RF+GCNL C +CDT + + Sbjct: 3 FKVVERVVSINGEGRRCGQLAIFIRFAGCNL-----------NCSYCDTLWANEKDVPYE 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVETNGT 121 + + + I+ KE + LTGGEPLLQ + L++ L + + +ETNG+ Sbjct: 52 VLSSKDIYEYIKS------KEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQ-ELKLVFPQVN-VSPENYIGF------------- 166 I + ++ I SP D K+ E K+ ++ ++ + F Sbjct: 106 ILLDEFLN-IENSPSFTMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLEKARE 164 Query: 167 --------DFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 D + P+ G N + + + N L +Q HK I Sbjct: 165 IINKYNLVDKTSVYISPVFGKI---NLDTIVEFMKNNRMNGVNLQLQLHKII 213 >gi|171912287|ref|ZP_02927757.1| Radical SAM domain protein [Verrucomicrobium spinosum DSM 4136] Length = 231 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 82/234 (35%), Gaps = 57/234 (24%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I E F ++QGEG G +VF R SGCNL +CR+CDT + +G Sbjct: 2 RISETFFSVQGEGKLTGVPSVFIRTSGCNL-----------RCRWCDTPYASW-NPEGDD 49 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123 +V+ + + RY V+TGGEP + L+Q L G I +ET GT+ Sbjct: 50 VSVEDILAEVNRH------PTRYVVVTGGEPTIAAGMRELLQGLRDAGKHITIETAGTVM 103 Query: 124 PPQ-GIDWICVSPKAGC----------------------DLKIKGGQE-----LKLVFPQ 155 P D +SPK ++ E LK V Sbjct: 104 PTDLACDLASLSPKLANSTPSVEEAGRGWHDRHEKTRWQPEVLRAWTEACEHQLKFVVSA 163 Query: 156 -------VNVSPENYIGFDFERFSLQPM--DGPFLEENTNLAISYCFQNPKWRL 200 N+ E I E L P + L + +C WR Sbjct: 164 EADLLEIENLLAEAKIQTAPENILLMPEGREQTRLHALAPQVVEWCKIR-GWRF 216 >gi|299135832|ref|ZP_07029016.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8] gi|298601956|gb|EFI58110.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8] Length = 227 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 56/241 (23%), Positives = 89/241 (36%), Gaps = 66/241 (27%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 E++ ++QGE AG +F R +GCNL +C +CD+++ T G + Sbjct: 5 ELYKSVQGESSFAGVPCIFVRLAGCNL-----------RCAWCDSEYTF---TGGKPFTT 50 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPP 125 D++ IE + TGGEP+LQ +PL+Q L + + +ET+G Sbjct: 51 DEIVAQIE-----ALQPCPLIEFTGGEPMLQQKELLPLMQRLLDANYTLMMETSGERPLA 105 Query: 126 QGIDWICVSPKA---GCDLKIKGGQELKLVFPQVNVS---PENYIGF--------DFER- 170 PKA D+K G F N+ P + + F +F R Sbjct: 106 DV-------PKAVHKIVDVKCPGAGSAANSFHMANLDALTPHDEVKFVLSNRADYEFARD 158 Query: 171 -------------FSLQPMDGPFLEE---------NTNLAISYCFQN-PKWRLSVQTHKF 207 L P E + + + + RLS+Q HK+ Sbjct: 159 FIRTHALETTCGSILLSPAFSKAPSELRTTDNATLDPRFVVEWMLADGLPARLSLQIHKY 218 Query: 208 I 208 I Sbjct: 219 I 219 >gi|306831581|ref|ZP_07464739.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426366|gb|EFM29480.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 237 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 87/243 (35%), Gaps = 56/243 (23%) Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 I EIF T QGEG G+ +F R GC+ C +CD+ F K Sbjct: 7 TLPILEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEK 55 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 R VD++ + +++ Y L+GG P L + L+ L RG +A+ET Sbjct: 56 PKRMTVDEVIEQLDQLGTYD-----YVTLSGGNPCLLANNMAELVAKLKARGVTLAIETQ 110 Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV------------NVSPENYIG 165 G+ + ID + +SPK + L + Q+ + + + Sbjct: 111 GSRWQTWLKDIDQVTLSPKPPSSKMTVNFETLDFIVSQLKKDQITFKIPVFDDADLAFAK 170 Query: 166 FDFERFSLQP-----------------MDGPFLEENTNLAISYCFQNPKW---RLSVQTH 205 +R+ QP + L+ L +P+W R+ Q H Sbjct: 171 MIQKRY--QPDVLYLSAGNPEPHASGNIVEHQLDRLRQLW-ETVAADPEWQSVRVLPQLH 227 Query: 206 KFI 208 + Sbjct: 228 TLL 230 >gi|323438941|gb|EGA96676.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus O11] gi|323441590|gb|EGA99239.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus O46] Length = 237 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 33/195 (16%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + G + ++ +E G + ++GG P L++ L+ +G A+ET Sbjct: 49 SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108 Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169 G+ P ID + +SPK ++L V Q + V + +DF Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVIAQCAPSSLNLKVVVFDDKDYDFA 168 Query: 170 R----------FSLQ 174 + F LQ Sbjct: 169 KMIHHRYPDIPFYLQ 183 >gi|171185411|ref|YP_001794330.1| radical SAM domain-containing protein [Thermoproteus neutrophilus V24Sta] gi|170934623|gb|ACB39884.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta] Length = 216 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 30/171 (17%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MKL + EIF +LQGEG + GR AVF R +GC +CR+CDT + Sbjct: 1 MKL-RVLEIFASLQGEGVNLGRPAVFIRLAGCP-----------IRCRYCDTKYSW-DPL 47 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119 G + +++ G + V+TGGEPL+ ++ L L + G + VET+ Sbjct: 48 GGEELDAEEVVRRAAAHGPLG-----HVVITGGEPLIWRNLHELACPLRRLG-TVEVETS 101 Query: 120 GTIEPPQ----GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 G P +D+ VSPK + + P SP+ + F Sbjct: 102 GVYPPTPQLDACVDFYDVSPK------LSNAGVEAPLHPHYPRSPKAWFKF 146 >gi|49482966|ref|YP_040190.1| radical activating enzyme [Staphylococcus aureus subsp. aureus MRSA252] gi|257424829|ref|ZP_05601256.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus 55/2053] gi|257427497|ref|ZP_05603896.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus 65-1322] gi|257430128|ref|ZP_05606512.1| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432830|ref|ZP_05609190.1| coenzyme PQQ synthesis [Staphylococcus aureus subsp. aureus E1410] gi|257435734|ref|ZP_05611782.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus M876] gi|282903337|ref|ZP_06311228.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus C160] gi|282905117|ref|ZP_06312975.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus Btn1260] gi|282908094|ref|ZP_06315925.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910354|ref|ZP_06318158.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus WBG10049] gi|282913547|ref|ZP_06321336.1| ExsD protein [Staphylococcus aureus subsp. aureus M899] gi|282916048|ref|ZP_06323811.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus D139] gi|282918500|ref|ZP_06326237.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus C427] gi|282923465|ref|ZP_06331145.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus C101] gi|283769872|ref|ZP_06342764.1| queuosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus H19] gi|283957539|ref|ZP_06374992.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus A017934/97] gi|293500594|ref|ZP_06666445.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus 58-424] gi|293509540|ref|ZP_06668251.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus M809] gi|293524126|ref|ZP_06670813.1| ExsD protein [Staphylococcus aureus subsp. aureus M1015] gi|295427286|ref|ZP_06819921.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590363|ref|ZP_06949002.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus MN8] gi|49241095|emb|CAG39773.1| putative radical activating enzyme [Staphylococcus aureus subsp. aureus MRSA252] gi|257272399|gb|EEV04522.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus 55/2053] gi|257275690|gb|EEV07163.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus 65-1322] gi|257279325|gb|EEV09926.1| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282245|gb|EEV12380.1| coenzyme PQQ synthesis [Staphylococcus aureus subsp. aureus E1410] gi|257284925|gb|EEV15044.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus M876] gi|282314333|gb|EFB44723.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus C101] gi|282317634|gb|EFB48006.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus C427] gi|282319996|gb|EFB50343.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus D139] gi|282322579|gb|EFB52901.1| ExsD protein [Staphylococcus aureus subsp. aureus M899] gi|282325746|gb|EFB56054.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus WBG10049] gi|282327759|gb|EFB58041.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331942|gb|EFB61453.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus Btn1260] gi|282596292|gb|EFC01253.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus C160] gi|283460019|gb|EFC07109.1| queuosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus H19] gi|283790990|gb|EFC29805.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus A017934/97] gi|290921089|gb|EFD98150.1| ExsD protein [Staphylococcus aureus subsp. aureus M1015] gi|291095599|gb|EFE25860.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus 58-424] gi|291467637|gb|EFF10152.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus M809] gi|295128674|gb|EFG58305.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576662|gb|EFH95377.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus MN8] gi|312438868|gb|ADQ77939.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus TCH60] gi|315194326|gb|EFU24718.1| putative radical activating enzyme [Staphylococcus aureus subsp. aureus CGS00] Length = 237 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 33/195 (16%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + G + ++ +E G + ++GG P L++ L+ +G A+ET Sbjct: 49 SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108 Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169 G+ P ID + +SPK ++L V Q + V + +DF Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVIAQCVPSSLNLKVVVFDDKDYDFA 168 Query: 170 R----------FSLQ 174 + F LQ Sbjct: 169 KMIHHRYPDIPFYLQ 183 >gi|196247860|ref|ZP_03146562.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. G11MC16] gi|196212644|gb|EDY07401.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. G11MC16] Length = 244 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 16/143 (11%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + + EIF T+QGEG G+ +F R +GC+ +CR+CD+ F G+ Sbjct: 3 RTIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSAFTW-DGS 50 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119 D+ + G + R+ ++GG P LL L+ L+++G ++AVET Sbjct: 51 AKEEIEQLTAEDIWQRLEAIGGRRFRHVTISGGNPLLLAALGELVALLHEKGVQVAVETQ 110 Query: 120 GTI--EPPQGIDWICVSPKAGCD 140 G+ + +D + +SPK Sbjct: 111 GSRWQDWLLDVDDVTISPKPPSS 133 >gi|94971669|ref|YP_593717.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis Ellin345] gi|94553719|gb|ABF43643.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis Ellin345] Length = 226 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 95/237 (40%), Gaps = 55/237 (23%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EI+ +LQGE + G +F R + CNL +C +CD+++ G + Sbjct: 3 ITEIYRSLQGESSYTGIPCIFVRLTACNL-----------RCAWCDSEYTF---KGGRKM 48 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123 + D++ +++ G +TGGEPLLQ VP ++ L G+++ +ET+G Sbjct: 49 SEDEIFAEVQKLAPGG-----LVEITGGEPLLQERELVPFMERLVASGYKVLIETSGERP 103 Query: 124 ---PPQG----IDWICVSPKAGCDLKIKG------GQELKLVFPQ-------VNVSPENY 163 PQ +D C + G +I+ E+K V + ++ Sbjct: 104 LANVPQDVVKIVDVKCPASGEGGSFRIENLDALTPHDEIKFVISDRADYEFAREFTRQHG 163 Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNP----KW--------RLSVQTHKFI 208 + P T A S+C +P W RL +QTHKFI Sbjct: 164 LENKVSSVIFSPAFRKD-ARGTRDA-SHCLVDPQDLANWVLEDQLDVRLGLQTHKFI 218 >gi|182416803|ref|ZP_02948194.1| Fe-S oxidoreductase of MoaA family [Clostridium butyricum 5521] gi|182379265|gb|EDT76764.1| Fe-S oxidoreductase of MoaA family [Clostridium butyricum 5521] Length = 222 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 48/234 (20%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +++I E FL++ GEG +G +A F RF GCNL +C +CDT + + Sbjct: 1 MFNIIEKFLSVDGEGPSSGELATFIRFQGCNL-----------RCSWCDTVYSWQKENIN 49 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR--GFEIAVETNG 120 R N ++ D I+ + LTGGEPL+Q ++ + L I +ETNG Sbjct: 50 ERLNAKEIYDYIKSNKVN------NVTLTGGEPLIQKNIDELLRLLDDDSNLNIHIETNG 103 Query: 121 TIEPPQG------------IDWICVSPKAGCDLKIKGGQEL------KLVFPQVNVSPEN 162 +I+ +D+ S K + + K V ++ + Sbjct: 104 SIDIEPFKKKYTRGNISYIVDFKLPSSKMSSHMNYNNINMISKNDVYKFVIGNMDYLKKA 163 Query: 163 YIGF------DFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 Y + + L P+ G + + + K RL VQ HK I Sbjct: 164 YEIIHVYDLANKCKVYLSPVTGNIEMSD---IVEFMKDKNMNKVRLQVQLHKII 214 >gi|283470004|emb|CAQ49215.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus ST398] Length = 237 Score = 137 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 33/195 (16%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + G + ++ +E G + ++GG P L++ L+ +G A+ET Sbjct: 49 SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108 Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169 G+ P ID + +SPK ++L V Q + V + +DF Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVIAQCVPSSLNLKVVVFDDKDYDFA 168 Query: 170 R----------FSLQ 174 + F LQ Sbjct: 169 KMIHHRYPDIPFYLQ 183 >gi|237668046|ref|ZP_04528030.1| radical SAM domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|237656394|gb|EEP53950.1| radical SAM domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 222 Score = 137 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 48/234 (20%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +++I E FL++ GEG +G +A F RF GCNL +C +CDT + + Sbjct: 1 MFNIIEKFLSVDGEGPSSGELATFIRFQGCNL-----------RCSWCDTVYSWQKENIN 49 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR--GFEIAVETNG 120 R N ++ D I+ + LTGGEPL+Q ++ + L I +ETNG Sbjct: 50 ERLNAKEIYDYIKSNKVN------NVTLTGGEPLIQKNIDELLRLLDDDSNLNIHIETNG 103 Query: 121 TIEPPQG------------IDWICVSPKAGCDLKIKGGQEL------KLVFPQVNVSPEN 162 +I+ +D+ S K + + K V ++ + Sbjct: 104 SIDIEPFKKKYTRGNISYIVDFKLPSSKMSSHMNYNNINMISKNDVYKFVIGNMDDLKKA 163 Query: 163 YIGF------DFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 Y + + L P+ G + + + K RL VQ HK I Sbjct: 164 YEIIHVYDLANKCKVYLSPVTGNIEMSD---IVEFMKDKNMNKVRLQVQLHKII 214 >gi|157692046|ref|YP_001486508.1| queuosine biosynthesis protein [Bacillus pumilus SAFR-032] gi|157680804|gb|ABV61948.1| queuosine biosynthesis protein [Bacillus pumilus SAFR-032] Length = 243 Score = 137 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 95/246 (38%), Gaps = 51/246 (20%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 K + EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ Sbjct: 3 KAIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGS 50 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119 D+++E G + + ++GG P LL+ LI L+++G + A+ET Sbjct: 51 AKHDIQWLHAEDIVKELKRIGGQAFSHVTISGGNPALLKQMESLIDLLHEKGIDTALETQ 110 Query: 120 GTI--EPPQGIDWICVSPKAGCDLK-------IKGGQELK------------LVFPQVNV 158 GT+ + ID + +SPK + ELK ++F ++ Sbjct: 111 GTMYQDWFLKIDDLTISPKPPSSNMKTDFAKLTRIIDELKNGNRLEHASLKVVIFDDHDL 170 Query: 159 SPENYIGFDFER--FSLQPMDG-----------PFLEENTNLAISYCFQNP---KWRLSV 202 + + + F LQ + L + + Q+P + R+ Sbjct: 171 AYAKDVHAKYPELPFYLQVGNDDTTTGDDASLLTHLLKKYEALVDQVAQDPDLNRVRVLP 230 Query: 203 QTHKFI 208 Q H + Sbjct: 231 QLHTLL 236 >gi|325978487|ref|YP_004288203.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178415|emb|CBZ48459.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 237 Score = 137 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 85/243 (34%), Gaps = 56/243 (23%) Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 I EIF T QGEG G+ +F R GC+ C +CD+ F K Sbjct: 7 TLPILEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEK 55 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 R D++ + +++ Y L+GG P L + L+ L RG +A+ET Sbjct: 56 PKRMTADEVIEQLDQLGTYD-----YVTLSGGNPCLLANNMAELVAKLKARGVTLAIETQ 110 Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVF------------PQVNVSPENYIG 165 G+ + ID + +SPK + L + P + + + Sbjct: 111 GSRWQTWLKDIDQVTLSPKPPSSKMTVNFETLDFIVSKLKKDQITFKIPVFDDADLAFAK 170 Query: 166 FDFERFSLQP-----------------MDGPFLEENTNLAISYCFQNPKW---RLSVQTH 205 +R+ QP + L+ L +P+W R+ Q H Sbjct: 171 MIQKRY--QPDVLYLSAGNPEPHANGNIVEHQLDRLRQLW-ETVAADPEWQSVRVLPQLH 227 Query: 206 KFI 208 + Sbjct: 228 TLL 230 >gi|288905497|ref|YP_003430719.1| radical SAM domain protein [Streptococcus gallolyticus UCN34] gi|288732223|emb|CBI13788.1| putative radical SAM domain protein [Streptococcus gallolyticus UCN34] Length = 237 Score = 137 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 86/243 (35%), Gaps = 56/243 (23%) Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 I EIF T QGEG G+ +F R GC+ C +CD+ F K Sbjct: 7 TLPILEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEK 55 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 R VD++ + +++ Y L+GG P L + L+ L RG +A+ET Sbjct: 56 PKRMTVDEVIEQLDQLGTYD-----YVTLSGGNPCLLANNMAELVAKLKARGVTLAIETQ 110 Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVF------------PQVNVSPENYIG 165 G+ + ID + +SPK + L + P + + + Sbjct: 111 GSRWQTWLKDIDQVTLSPKPPSSKMTVNFETLDFIVSKLKKDQITFKIPVFDDADLTFAK 170 Query: 166 FDFERFSLQP-----------------MDGPFLEENTNLAISYCFQNPKW---RLSVQTH 205 +R+ QP + L+ L +P+W R+ Q H Sbjct: 171 MIQKRY--QPDVLYLSAANPEPHANGNIVEHQLDRLRQLW-ETVAADPEWQSVRVLPQLH 227 Query: 206 KFI 208 + Sbjct: 228 TLL 230 >gi|283780242|ref|YP_003370997.1| radical SAM domain-containing protein [Pirellula staleyi DSM 6068] gi|283438695|gb|ADB17137.1| Radical SAM domain protein [Pirellula staleyi DSM 6068] Length = 228 Score = 137 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 47/136 (34%), Positives = 70/136 (51%), Gaps = 19/136 (13%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E++ +LQGEG G +VF R SGCNL +C FCDT F Q +G + Sbjct: 3 IAELYTSLQGEGRLTGTPSVFVRASGCNL-----------RCWFCDTPFTSWQ-PEGEDW 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEP 124 +++++ ++ K+ + V+TGGEP+L VPL Q L + G I +ET GT+ Sbjct: 51 SLEEIVHQVQA------KQTSHVVITGGEPMLYSEMVPLTQELKRLGLHITIETAGTLHL 104 Query: 125 PQGIDWICVSPKAGCD 140 D + +SPK Sbjct: 105 EVACDLMSISPKLASS 120 >gi|182412684|ref|YP_001817750.1| radical SAM domain-containing protein [Opitutus terrae PB90-1] gi|177839898|gb|ACB74150.1| Radical SAM domain protein [Opitutus terrae PB90-1] Length = 231 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 19/133 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF +LQGEG G +VF R SGCNL +C +CDT + +G + Sbjct: 3 ISEIFYSLQGEGLLTGVPSVFVRTSGCNL-----------RCNWCDTPYASW-NPEGKPW 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP 124 ++Q+ ++ R+ VLTGGEP++ ++ L L + I +ET T+ P Sbjct: 51 RIEQIVREVQSH-----PTARHVVLTGGEPMIAKEIAELAAQLKGLHYHITIETAATVAP 105 Query: 125 PQ-GIDWICVSPK 136 D +SPK Sbjct: 106 EGIACDLASLSPK 118 >gi|189500807|ref|YP_001960277.1| Radical SAM domain-containing protein [Chlorobium phaeobacteroides BS1] gi|189496248|gb|ACE04796.1| Radical SAM domain protein [Chlorobium phaeobacteroides BS1] Length = 223 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 55/235 (23%), Positives = 84/235 (35%), Gaps = 58/235 (24%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF ++QGE AG F R SGC+ + CR+CDT + ++ G Sbjct: 7 INEIFRSIQGESTFAGTPCTFIRLSGCD-----------SACRWCDTRYASVE--NGTAM 53 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEP 124 + ++ + +TGGEPL Q L+Q L +G + +ET G + Sbjct: 54 TLSEIERRAD------GFRTSLVEITGGEPLQQEPVYALMQQLCDKGHTVLLETGGFLPV 107 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELKLVFP---QVNVSPENYIGFDFERFSLQPMDGP 179 + V P+ DLK E + ++ VS + FE F L Sbjct: 108 DR------VDPRVHKIIDLKAPSSGESGRICTSNIELAVSAAEPLKKSFE-FKLLLASRE 160 Query: 180 FLEENTNLAISYCFQ--------------NP------------KWRLSVQTHKFI 208 + +L Y +P RL +Q HK+I Sbjct: 161 DYDWAVDLLNRYRLNQHCTVLMGTVFNKLHPAELAAWILEDNLNVRLQLQLHKYI 215 >gi|291519768|emb|CBK74989.1| Organic radical activating enzymes [Butyrivibrio fibrisolvens 16/4] Length = 222 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 93/238 (39%), Gaps = 54/238 (22%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M +Y + E F+++ GEG HAG +AVF R GCNL C +CDT + Sbjct: 1 MSVYYVVEKFVSINGEGQHAGELAVFIRLRGCNL-----------ACSYCDTRWACSYEA 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKR-GFEIAVET 118 + ++ D ++ + LTGGEPL D+ L++A ++ +ET Sbjct: 50 PAEQMTEVEILDYVKSTGVNR------VTLTGGEPLKARDIKDLLRAFAAEPNIKVEIET 103 Query: 119 NGT--IEPPQGI------------------DWICVS------PKAGCDLKIKGGQELKLV 152 NG+ I P I D + +S PK EL V Sbjct: 104 NGSVNIVPFAAIPNAPAFTLDYKLAGSGMEDEMDLSNFAFLQPKDSVKFVCSDVSELDKV 163 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK--WRLSVQTHKFI 208 V+ Y + + P+ G + ++Y ++ + RL +Q HKFI Sbjct: 164 CELVD----TYGLAEKCTVLISPVFGRIDPADM---VNYLIEHKRNDIRLQLQLHKFI 214 >gi|307308045|ref|ZP_07587763.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Sinorhizobium meliloti BL225C] gi|307319886|ref|ZP_07599309.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Sinorhizobium meliloti AK83] gi|306894426|gb|EFN25189.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Sinorhizobium meliloti AK83] gi|306901449|gb|EFN32053.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Sinorhizobium meliloti BL225C] Length = 245 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 83/239 (34%), Gaps = 49/239 (20%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 9 IRVSEIFGPTIQGEGVLIGLPTVFVRSGGCDY-----------RCSWCDSLHA-VDSNYR 56 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + ++ +E E L+GG P +Q LI +++G+ A+ET G++ Sbjct: 57 HEWQTMSTEEVWQEIVRLSGGEAVMVSLSGGNPAIQPLGDLIGRGHEKGYRFALETQGSV 116 Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELK----------------LVFPQVNVSPENYI 164 + +D + +SPK + L +VF + + + Sbjct: 117 ARDWFAALDVLVLSPKPPSSGMETDWEALDDCLRSAGNKPQTVLKFVVFDEADYAYAMTA 176 Query: 165 GFDFERF--SLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQTH 205 LQP + P E + + I + +W R+ Q H Sbjct: 177 AARHPHLPVYLQPGNHTPPPAEEADAPIDIDGVMERMRWLVDRVVADRWFEARVLPQLH 235 >gi|295401301|ref|ZP_06811273.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus thermoglucosidasius C56-YS93] gi|312111879|ref|YP_003990195.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. Y4.1MC1] gi|294976708|gb|EFG52314.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus thermoglucosidasius C56-YS93] gi|311216980|gb|ADP75584.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. Y4.1MC1] Length = 243 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 86/246 (34%), Gaps = 51/246 (20%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 K + EIF T+QGEG G+ +F R +GC+ CR+CD+ F G+ Sbjct: 3 KKIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCRWCDSAFTW-DGS 50 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119 G + E G R+ ++GG P L+Q L+ L +G IAVET Sbjct: 51 AKGEIRQMTAGQIWERLCELGGDRFRHVTISGGNPVLIQALEELVLLLKNKGVRIAVETQ 110 Query: 120 GTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV----------------NVSPE 161 G+ + ID + +SPK L + ++ + Sbjct: 111 GSRWQDWLYDIDDVTISPKPPSSGMETDFAVLDHIIGKLVGAGRASHVSLKVVVFDDDDF 170 Query: 162 NYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKW--------------RLSV 202 +Y +R F LQ + +E++ W R+ Sbjct: 171 DYAKIIHKRYPEISFYLQAGNDDIMEKDVAALREKLLAKLDWLVEKVAQSNELNDVRVLP 230 Query: 203 QTHKFI 208 Q H + Sbjct: 231 QLHALL 236 >gi|78188483|ref|YP_378821.1| radical activating enzyme, putative [Chlorobium chlorochromatii CaD3] gi|78170682|gb|ABB27778.1| radical activating enzyme, putative [Chlorobium chlorochromatii CaD3] Length = 226 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 86/239 (35%), Gaps = 63/239 (26%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF ++QGE AG F R +GC C +CDT + +G Sbjct: 9 LRISEIFYSIQGEAFFAGFPCAFIRLAGC-----------GHGCNYCDTSYAEEKGELMA 57 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 + A++I++ +TGGEPLLQ V PL++ L RG ++ +ET G + Sbjct: 58 Q------AEIIKQAL---SYHAPIIEITGGEPLLQPAVYPLMEELCNRGEQVLLETGGFL 108 Query: 123 EPPQG-------IDWICVSPK-------AGCDLKIKGGQEL--KLVFPQVNVSPENYIG- 165 + ID S A L ++ E + F V + E+Y Sbjct: 109 SVEKVDKRVHKIIDLKAPSSGVAEKNNPANIRLALEAAPEEQRRFEFKMVIANREDYEWA 168 Query: 166 ---FDFERF-------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + +L P T LA RL +Q HK++ Sbjct: 169 KTLLEEHHIAAASTVTMGTVFGALSP---------TQLAEWILHDRLPVRLQLQLHKYL 218 >gi|284023732|ref|ZP_06378130.1| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus 132] Length = 237 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 51/216 (23%), Positives = 87/216 (40%), Gaps = 34/216 (15%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + G + ++ +E G + ++GG P L++ L+ +G A+ET Sbjct: 49 SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108 Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169 G+ P ID + +SPK ++L V Q + V + +DF Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVITQCVPSSLNLKVVVFDDKDYDFA 168 Query: 170 R----------FSLQPMDGPFLEENTNLAISYCFQN 195 + F LQ + P+L ++ + I + Sbjct: 169 KMIHHRYPDIPFYLQ-VGNPYLSDSVDNHIEKLLER 203 >gi|15923700|ref|NP_371234.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926387|ref|NP_373920.1| hypothetical protein SA0665 [Staphylococcus aureus subsp. aureus N315] gi|21282401|ref|NP_645489.1| hypothetical protein MW0672 [Staphylococcus aureus subsp. aureus MW2] gi|49485582|ref|YP_042803.1| putative radical activating enzyme [Staphylococcus aureus subsp. aureus MSSA476] gi|57651549|ref|YP_185647.1| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus COL] gi|87162096|ref|YP_493398.1| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194484|ref|YP_499278.1| hypothetical protein SAOUHSC_00719 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267170|ref|YP_001246113.1| radical SAM domain-containing protein [Staphylococcus aureus subsp. aureus JH9] gi|150393218|ref|YP_001315893.1| radical SAM domain-containing protein [Staphylococcus aureus subsp. aureus JH1] gi|151220891|ref|YP_001331713.1| hypothetical protein NWMN_0679 [Staphylococcus aureus subsp. aureus str. Newman] gi|156979038|ref|YP_001441297.1| coenzyme PQQ synthesis homologue [Staphylococcus aureus subsp. aureus Mu3] gi|161508974|ref|YP_001574633.1| organic radical-activating protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140926|ref|ZP_03565419.1| organic radical-activating protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315349|ref|ZP_04838562.1| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731333|ref|ZP_04865498.1| organic radical-activating protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253732846|ref|ZP_04867011.1| organic radical-activating protein [Staphylococcus aureus subsp. aureus TCH130] gi|255005502|ref|ZP_05144103.2| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794969|ref|ZP_05643948.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus A9781] gi|258418286|ref|ZP_05682551.1| radical activating enzyme family protein [Staphylococcus aureus A9763] gi|258421583|ref|ZP_05684508.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus A9719] gi|258430776|ref|ZP_05688488.1| radical activating enzyme family protein [Staphylococcus aureus A9299] gi|258441731|ref|ZP_05691003.1| coenzyme PQQ synthesis [Staphylococcus aureus A8115] gi|258445827|ref|ZP_05694004.1| radical activating enzyme family protein [Staphylococcus aureus A6300] gi|258449638|ref|ZP_05697740.1| radical activating enzyme family protein [Staphylococcus aureus A6224] gi|258452918|ref|ZP_05700912.1| radical activating enzyme family protein [Staphylococcus aureus A5948] gi|258454039|ref|ZP_05702011.1| radical activating enzyme family protein [Staphylococcus aureus A5937] gi|262048445|ref|ZP_06021330.1| hypothetical protein SAD30_2172 [Staphylococcus aureus D30] gi|262052792|ref|ZP_06024980.1| hypothetical protein SA930_0349 [Staphylococcus aureus 930918-3] gi|269202330|ref|YP_003281599.1| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus ED98] gi|282894475|ref|ZP_06302704.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus A8117] gi|282922002|ref|ZP_06329699.1| 7-cyano-7-deazaguanosine (preQ) biosynthesis protein QueE [Staphylococcus aureus A9765] gi|282926573|ref|ZP_06334203.1| 7-cyano-7-deazaguanosine (preQ) biosynthesis protein QueE [Staphylococcus aureus A10102] gi|294849379|ref|ZP_06790122.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus A9754] gi|295406428|ref|ZP_06816234.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus A8819] gi|296274774|ref|ZP_06857281.1| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus MR1] gi|297208566|ref|ZP_06924995.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245155|ref|ZP_06929029.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus A8796] gi|300912658|ref|ZP_07130101.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus TCH70] gi|304381675|ref|ZP_07364324.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13700601|dbj|BAB41898.1| SA0665 [Staphylococcus aureus subsp. aureus N315] gi|14246479|dbj|BAB56872.1| coenzyme PQQ synthesis homologue [Staphylococcus aureus subsp. aureus Mu50] gi|21203838|dbj|BAB94537.1| MW0672 [Staphylococcus aureus subsp. aureus MW2] gi|49244025|emb|CAG42451.1| putative radical activating enzyme [Staphylococcus aureus subsp. aureus MSSA476] gi|57285735|gb|AAW37829.1| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus COL] gi|87128070|gb|ABD22584.1| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202042|gb|ABD29852.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740239|gb|ABQ48537.1| Radical SAM domain protein [Staphylococcus aureus subsp. aureus JH9] gi|149945670|gb|ABR51606.1| Radical SAM domain protein [Staphylococcus aureus subsp. aureus JH1] gi|150373691|dbj|BAF66951.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156721173|dbj|BAF77590.1| coenzyme PQQ synthesis homologue [Staphylococcus aureus subsp. aureus Mu3] gi|160367783|gb|ABX28754.1| organic radical-activating protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725074|gb|EES93803.1| organic radical-activating protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253729211|gb|EES97940.1| organic radical-activating protein [Staphylococcus aureus subsp. aureus TCH130] gi|257788941|gb|EEV27281.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus A9781] gi|257839079|gb|EEV63558.1| radical activating enzyme family protein [Staphylococcus aureus A9763] gi|257842509|gb|EEV66933.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus A9719] gi|257849448|gb|EEV73418.1| radical activating enzyme family protein [Staphylococcus aureus A9299] gi|257852200|gb|EEV76127.1| coenzyme PQQ synthesis [Staphylococcus aureus A8115] gi|257855403|gb|EEV78341.1| radical activating enzyme family protein [Staphylococcus aureus A6300] gi|257857146|gb|EEV80045.1| radical activating enzyme family protein [Staphylococcus aureus A6224] gi|257859429|gb|EEV82283.1| radical activating enzyme family protein [Staphylococcus aureus A5948] gi|257863904|gb|EEV86660.1| radical activating enzyme family protein [Staphylococcus aureus A5937] gi|259159333|gb|EEW44389.1| hypothetical protein SA930_0349 [Staphylococcus aureus 930918-3] gi|259163533|gb|EEW48090.1| hypothetical protein SAD30_2172 [Staphylococcus aureus D30] gi|262074620|gb|ACY10593.1| radical activating enzyme family protein [Staphylococcus aureus subsp. aureus ED98] gi|269940287|emb|CBI48664.1| putative radical activating enzyme [Staphylococcus aureus subsp. aureus TW20] gi|282591466|gb|EFB96538.1| 7-cyano-7-deazaguanosine (preQ) biosynthesis protein QueE [Staphylococcus aureus A10102] gi|282593660|gb|EFB98652.1| 7-cyano-7-deazaguanosine (preQ) biosynthesis protein QueE [Staphylococcus aureus A9765] gi|282763188|gb|EFC03319.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus A8117] gi|285816411|gb|ADC36898.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus aureus 04-02981] gi|294823911|gb|EFG40337.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus A9754] gi|294968573|gb|EFG44596.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus A8819] gi|296886821|gb|EFH25725.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177826|gb|EFH37075.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus A8796] gi|300886904|gb|EFK82106.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus TCH70] gi|302750608|gb|ADL64785.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339778|gb|EFM05723.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829203|emb|CBX34045.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129385|gb|EFT85378.1| organic radical-activating protein [Staphylococcus aureus subsp. aureus CGS03] gi|315197686|gb|EFU28021.1| organic radical-activating protein [Staphylococcus aureus subsp. aureus CGS01] gi|320139958|gb|EFW31819.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus MRSA131] gi|320141952|gb|EFW33780.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus aureus subsp. aureus MRSA177] gi|329313432|gb|AEB87845.1| Radical SAM domain protein [Staphylococcus aureus subsp. aureus T0131] gi|329724494|gb|EGG61001.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus 21172] gi|329728549|gb|EGG64982.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus 21189] gi|329729722|gb|EGG66123.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus subsp. aureus 21193] Length = 237 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 33/195 (16%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + G + ++ +E G + ++GG P L++ L+ +G A+ET Sbjct: 49 SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108 Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169 G+ P ID + +SPK ++L V Q + V + +DF Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVITQCVPSSLNLKVVVFDDKDYDFA 168 Query: 170 R----------FSLQ 174 + F LQ Sbjct: 169 KMIHHRYPDIPFYLQ 183 >gi|82750412|ref|YP_416153.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus RF122] gi|82655943|emb|CAI80347.1| coenzyme PQQ synthesis homolog [Staphylococcus aureus RF122] Length = 237 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 33/195 (16%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + G + ++ +E G + ++GG P L++ L+ +G A+ET Sbjct: 49 SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108 Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169 G+ P ID + +SPK ++L V Q + V + +DF Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVITQCVPSSLNLKVVVFDDKDYDFA 168 Query: 170 R----------FSLQ 174 + F LQ Sbjct: 169 KMIHHRYPDIPFYLQ 183 >gi|306833726|ref|ZP_07466852.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus bovis ATCC 700338] gi|304424063|gb|EFM27203.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus bovis ATCC 700338] Length = 237 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 84/241 (34%), Gaps = 52/241 (21%) Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 I EIF T QGEG G+ +F R GC+ C +CD+ F K Sbjct: 7 TLPILEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEK 55 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 R D++ + +++ Y L+GG P L + L+ L RG +A+ET Sbjct: 56 PKRMTTDEVIEQLDQLGTYD-----YVTLSGGNPCLLANNMAELVAKLKARGVTLAIETQ 110 Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL---- 173 G+ + ID + +SPK + L + Q+ + F+ L Sbjct: 111 GSRWQTWLKDIDQVTLSPKPPSSKMTVNFETLDFIVSQLKKDQITFKVPVFDDADLVFAK 170 Query: 174 ------QP-----------------MDGPFLEENTNLAISYCFQNPKW---RLSVQTHKF 207 QP + LE L +P+W R+ Q H Sbjct: 171 MIQKRYQPDVLYLSAGNPEPHANGNIVEHQLERLRQLW-ETVATDPEWQSVRVLPQLHTL 229 Query: 208 I 208 + Sbjct: 230 L 230 >gi|254504058|ref|ZP_05116209.1| radical SAM domain protein [Labrenzia alexandrii DFL-11] gi|222440129|gb|EEE46808.1| radical SAM domain protein [Labrenzia alexandrii DFL-11] Length = 242 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 75/219 (34%), Gaps = 36/219 (16%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G+ VF R GC+ +C +CDT + Sbjct: 6 IRVNEIFGPTIQGEGALIGQPTVFVRTGGCDY-----------RCSWCDTLHA-VDSAYR 53 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ ++ + I + L+GG P +Q LI+ + G+ A+ET G+I Sbjct: 54 DDWHPMTPQAILMQIEILSGGKPLMVSLSGGNPAIQPLGSLIELGKREGYRFALETQGSI 113 Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--------------- 165 + +D + +SPK Q+L + + Sbjct: 114 AKDWFAALDVLTLSPKPPSSGMDTDWQKLAECVEAAGSETQTVLKTVIFDDADYDYAKDL 173 Query: 166 ---FDFERFSLQPMDGPFLEENTNLA-ISY--CFQNPKW 198 + LQP + T A I +W Sbjct: 174 AARYPELPLYLQPGNHTPPSPATADAPIDMPGIMDRMRW 212 >gi|149196484|ref|ZP_01873538.1| queuosine biosynthesis protein [Lentisphaera araneosa HTCC2155] gi|149140164|gb|EDM28563.1| queuosine biosynthesis protein [Lentisphaera araneosa HTCC2155] Length = 212 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 89/224 (39%), Gaps = 38/224 (16%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + I EI+ +LQGE +G +F R SGCNL +C +CDT++ T G Sbjct: 1 MLYITEIYKSLQGESTWSGLACIFIRLSGCNL-----------RCSWCDTEYSF---TSG 46 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 + ++D + D +E+ +TGGEPL Q V L+Q L G + VET G Sbjct: 47 DKLSIDNILDRVEQL------NCDLVEVTGGEPLAQDKVGELVQKLLDLGKTVLVETGGH 100 Query: 122 IEP-------PQGIDWICVSPKAGCDLKIKGG------QELKLVFPQVNV---SPENYIG 165 ++ + +D C + K +K E+K V + + Sbjct: 101 MDINLVSKESIRIMDIKCPASKMSHKNDLKNIAKLTPKDEVKFVIQNKEDFLWAEKTIRE 160 Query: 166 FDFERFSLQPMDGPFLEENTNLAISYCFQN-PKWRLSVQTHKFI 208 + E+ M F + Q+ R+ +Q HK I Sbjct: 161 YKLEKKCTVIMSTVFGLMDREELAGLILQSGLNIRMQIQLHKLI 204 >gi|168704078|ref|ZP_02736355.1| radical activating enzyme [Gemmata obscuriglobus UQM 2246] Length = 242 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 83/230 (36%), Gaps = 55/230 (23%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EI+L++QGE AG VF R S C+ ++CR+CDT QGT+ R Sbjct: 33 VHEIYLSVQGESTFAGLPCVFVRTSVCD-----------SRCRWCDTPHAFTQGTRVPRA 81 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 V +TGGEPLLQ D +PL+ L G + +ET+G + Sbjct: 82 EV---------LGKVLSFGCPLVEITGGEPLLQPDVLPLMSELCAAGKTVLLETSGAHDV 132 Query: 125 PQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLVFPQV-----NVSP 160 V P+ D+K E +K V V Sbjct: 133 SA------VDPRVHIIMDVKCPASGESHRNRWANFDALKPTDQIKFVIASRADWDWAVGV 186 Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208 D L + F + + + + + R+ +Q HK+I Sbjct: 187 IRAHKLDERFACL--VSCVFSDLKPVELVGWLLASGLHRVRMQLQMHKYI 234 >gi|323465121|gb|ADX77274.1| coenzyme PQQ synthesis-like protein [Staphylococcus pseudintermedius ED99] Length = 237 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 34/207 (16%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDF-----------RCSWCDSKFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + + + +++ + G + ++GG P L++ + A+ET Sbjct: 49 SMKDDIEMMEAEEILAQLRNIGGNRFNHVTISGGNPALIKGLQSFVDLCEANDIRTALET 108 Query: 119 NGT--IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE-------NYIGFDFE 169 G+ + I+ + +SPK + L V Q+++S + +DF Sbjct: 109 QGSQFKPWMRQINDLTLSPKPPSSGMQQNLPRLDEVIEQLDISRINLKVVVFDDADYDFA 168 Query: 170 R----------FSLQPMDGPFLEENTN 186 + F LQ + P+LEE+ Sbjct: 169 KMIHQRYPDIPFYLQ-VGNPYLEEHVE 194 >gi|16264809|ref|NP_437601.1| hypothetical protein SM_b20938 [Sinorhizobium meliloti 1021] gi|2808502|emb|CAA12532.1| ExsD protein [Sinorhizobium meliloti] gi|15140947|emb|CAC49461.1| hypothetical conserved protein [Sinorhizobium meliloti 1021] Length = 245 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 82/239 (34%), Gaps = 49/239 (20%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 9 IRVSEIFGPTIQGEGVLIGLPTVFVRSGGCDY-----------RCSWCDSLHA-VDSNYR 56 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + ++ +E E L+GG P +Q LI ++ G+ A+ET G++ Sbjct: 57 HEWQTMSTEEVWQEIVRLSGGEAVMVSLSGGNPAIQPLGDLIGRGHENGYRFALETQGSV 116 Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELK----------------LVFPQVNVSPENYI 164 + +D + +SPK + L +VF + + + Sbjct: 117 ARDWFANLDVLVLSPKPPSSGMETDWEALDDCLRSAGNKPQTVLKFVVFDEADYAYAMTA 176 Query: 165 GFDFERF--SLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQTH 205 LQP + P E + + I + +W R+ Q H Sbjct: 177 AARHPHLPVYLQPGNHTPPPAEEADAPIDIDGVMERMRWLVDRVVADRWFEARVLPQLH 235 >gi|258423359|ref|ZP_05686250.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus A9635] gi|257846420|gb|EEV70443.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus aureus A9635] Length = 237 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 33/195 (16%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + + ++ +E G + ++GG P L++ L+ +G A+ET Sbjct: 49 SAKSDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108 Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169 G+ P ID + +SPK ++L V Q + V + +DF Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVIAQCVPSSLNLKVVVFDDKDYDFA 168 Query: 170 R----------FSLQ 174 + F LQ Sbjct: 169 KMIHHRYPDIPFYLQ 183 >gi|239826407|ref|YP_002949031.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. WCH70] gi|239806700|gb|ACS23765.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Geobacillus sp. WCH70] Length = 245 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 16/143 (11%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 K + EIF T+QGEG G+ +F R +GC+ +CR+CD+ F G+ Sbjct: 5 KKIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSAFTW-DGS 52 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119 + E + G + ++GG P L+Q L+ L +G IAVET Sbjct: 53 AKEEIRQMTAEQIWERLYELGGDRFSHVTISGGNPVLIQALEELVVLLKNKGIRIAVETQ 112 Query: 120 GTI--EPPQGIDWICVSPKAGCD 140 G+ + ID I +SPK Sbjct: 113 GSRWQDWLYHIDDITISPKPPSS 135 >gi|222149727|ref|YP_002550684.1| radical activating protein [Agrobacterium vitis S4] gi|221736709|gb|ACM37672.1| radical activating protein [Agrobacterium vitis S4] Length = 255 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 81/246 (32%), Gaps = 54/246 (21%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + + EIF T+QGEG G+ VF R GC+ +C +CD+ ++ Sbjct: 12 TVIRVSEIFGPTIQGEGVLIGQPTVFVRMGGCDY-----------RCSWCDSLHA-VESR 59 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + + + E L+GG P +Q LI ++RG+ A+ET G Sbjct: 60 FREEWLPMSVQAIWAEVESLSGGVPLMVSLSGGNPAIQPLGALIAHGHERGYRFALETQG 119 Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKL---------------------VFPQVN 157 +I + +D + VSPK L L VF + + Sbjct: 120 SIARDWFADLDVLVVSPKPPSSGMETDWDALSLCLEKAAARGEQQSPLTVLKFIVFDEAD 179 Query: 158 VSPENYIGFDFERF--SLQPMD-GPFLEENTNLAISY--CFQNPKW-------------R 199 + LQP + P E+ + I W R Sbjct: 180 YAYARDASARHPHLPVYLQPGNHTPPPPEDDDAVIDMDGIMTRMHWLVDRVVEDRWFAAR 239 Query: 200 LSVQTH 205 + Q H Sbjct: 240 VLPQLH 245 >gi|320353477|ref|YP_004194816.1| Radical SAM domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320121979|gb|ADW17525.1| Radical SAM domain protein [Desulfobulbus propionicus DSM 2032] Length = 223 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 86/230 (37%), Gaps = 49/230 (21%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E F ++QGE AG +F R +GCNL +C +CD + + G Sbjct: 8 VCERFYSIQGESTRAGLPCLFVRLAGCNL-----------RCSYCDARYTWEET--GETM 54 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE- 123 VD++ E+ G +TGGEPL Q V PL++ L G + +ETNG++ Sbjct: 55 TVDEILAWAEQ------YPGVMVEVTGGEPLRQNGVYPLMRNLLAAGLTVLLETNGSLPL 108 Query: 124 --PPQGI----DWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-----DFERFS 172 P+ + D C P +G L L+ + + I F D ++ Sbjct: 109 CGVPEEVGIVMDIKC--PDSGMA-AHNLADNLDLLRERARRQCRDEIKFVLSSVDDFHWA 165 Query: 173 LQPMDGPFLEENTNLAISYCF--------------QNPKWRLSVQTHKFI 208 Q + L+ + S RL +Q H + Sbjct: 166 RQVVTRERLDRLLPVLFSPVRPLLDPALLAQLLLDHRLNVRLQLQLHALL 215 >gi|238921904|ref|YP_002935418.1| queuosine biosynthesis protein QueE [Eubacterium eligens ATCC 27750] gi|238873576|gb|ACR73284.1| queuosine biosynthesis protein QueE [Eubacterium eligens ATCC 27750] Length = 221 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 90/229 (39%), Gaps = 42/229 (18%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + E F+++ GEG G +AVF RF GCNL C +CDT + Sbjct: 2 KVVEKFISINGEGRRTGELAVFIRFKGCNL-----------NCSYCDTKWANEPACDYEE 50 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALN-KRGFEIAVETNGTI 122 + D++ + + E I + LTGGEPLLQ D+ L++ L K + +ETNG + Sbjct: 51 LSPDEICEYVSETGI------KNVTLTGGEPLLQKDIRSLVEKLLNKSDIRVEIETNGAV 104 Query: 123 EPPQGIDWIC---VS-------PKAGCDLKI--------KGGQELKLV---FPQVNVSPE 161 + + +S P +GC+ K+ + +K V + + + Sbjct: 105 DIAPLANAFSKEKLSLTMDYKLPSSGCEEKMLLSNMEVLRKQDTVKFVSGSINDLECAEK 164 Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYC--FQNPKWRLSVQTHKFI 208 F + F +++ + RL +Q HK I Sbjct: 165 IIEKFHLTERCQVFISSVFGSIEPVEIVNFMTSKRMNDVRLQIQMHKVI 213 >gi|189347255|ref|YP_001943784.1| Radical SAM domain protein [Chlorobium limicola DSM 245] gi|189341402|gb|ACD90805.1| Radical SAM domain protein [Chlorobium limicola DSM 245] Length = 220 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 60/238 (25%), Positives = 92/238 (38%), Gaps = 57/238 (23%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 SI EIF ++QGE AG F R +GC CR+CDT + GT Sbjct: 1 MTISISEIFHSIQGESSFAGWPCAFVRLAGC-----------GHGCRYCDTTYAEKPGT- 48 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 D++ + I+E + +TGGEPLLQ +V PL++ L R ++ +ET G Sbjct: 49 --EMETDEIFEKIDEIG------AQLVEITGGEPLLQKEVYPLMERLCDRKEKVLLETGG 100 Query: 121 TIEPPQG-------IDWICVSPKA-------GCDLKIKGGQ------ELKLVFPQVNVSP 160 + + ID S +L ++ G+ E K+V Sbjct: 101 FLSVAKVDQRVHKIIDLKAPSSGVCNKNNPQNIELAMRSGKAEISSFEFKIVV----ADR 156 Query: 161 ENYIG----------FDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 E+Y+ + L + G E LA + R+ +Q HK+I Sbjct: 157 EDYLWARTMLTDTGLAEACTVMLGVVFGKLEPE--RLAQWILEDRIRVRMQLQLHKYI 212 >gi|317129081|ref|YP_004095363.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus cellulosilyticus DSM 2522] gi|315474029|gb|ADU30632.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus cellulosilyticus DSM 2522] Length = 242 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 83/223 (37%), Gaps = 37/223 (16%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + + EIF T+QGEG GR +F R +GC+ C +CD+ F G Sbjct: 1 MYKFPVLEIFGPTIQGEGMVVGRKTMFVRTAGCDY-----------SCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVET 118 + +++ G K Y ++GG P L LI L+ ++A+ET Sbjct: 49 SSKEDIKQLTADEILCRLKKDGGKSFDYVTISGGNPALFSHLDELINLLHSENVKVALET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGG---QE---------------LKLV-FPQVN 157 G+ E ID + +SPK I E LK+V F + Sbjct: 109 QGSRWQEWFLKIDDLTLSPKPPSSQMITNWKILDEIIGHLSSNNRLQYTSLKIVIFTNED 168 Query: 158 VSPENYIGFDFERF--SLQPMDGPFLEENTNLAISYCFQNPKW 198 ++ I F LQ + E+N + + KW Sbjct: 169 LTYAKKIHERFPHIPLYLQVGNEDLDEDNEERLMKKLLEKYKW 211 >gi|194014564|ref|ZP_03053181.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus pumilus ATCC 7061] gi|194013590|gb|EDW23155.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus pumilus ATCC 7061] Length = 243 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 93/246 (37%), Gaps = 51/246 (20%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 K + EIF T+QGEG G+ +F R +GC+ C +CD+ F Sbjct: 3 KAIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTWNGSA 51 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119 K D+++E G + + ++GG P LL+ LI L++ G + A+ET Sbjct: 52 KHD-IQWLHAEDIVKELKRIGGQAFSHVTISGGNPALLKQMESLIDLLHEEGIDTALETQ 110 Query: 120 GTI--EPPQGIDWICVSPKAGCDLK-------IKGGQELK------------LVFPQVNV 158 GT+ + ID + +SPK + ELK ++F ++ Sbjct: 111 GTMYQDWFLKIDDLTISPKPPSSNMKTDFTKLTRIIDELKNGNRLQHASLKVVIFDDHDL 170 Query: 159 SPENYIGFDFER--FSLQPMDG-----------PFLEENTNLAISYCFQNP---KWRLSV 202 + + + F LQ + L + + Q+P + R+ Sbjct: 171 AYAKDVHAKYPELPFYLQVGNDDTTTGDDAYLLTHLLKKYEALVDQVAQDPDLNRVRVLP 230 Query: 203 QTHKFI 208 Q H + Sbjct: 231 QLHTLL 236 >gi|149179805|ref|ZP_01858310.1| YkvL [Bacillus sp. SG-1] gi|148851997|gb|EDL66142.1| YkvL [Bacillus sp. SG-1] Length = 239 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 87/243 (35%), Gaps = 48/243 (19%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M+ + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MRKIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + + D+ EE G + ++GG P L+ L+ + G + A+ET Sbjct: 49 SAKEDIRMLTALDIWEELREIGGNRFNHVTISGGNPALIAAIDDLLTVFKENGIKSALET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV-------------NVSPENY 163 G+ + ID + +SPK ++L + Q+ N Y Sbjct: 109 QGSRWQDWFLDIDELTLSPKPPSSGMKTDFEKLDFILEQLKEHKSYSLKVVIFNDEDLEY 168 Query: 164 IGFDFER-----FSLQPMDGPFLEEN-----TNLA------ISYCFQN---PKWRLSVQT 204 ER F LQ + EN L I ++ R+ Q Sbjct: 169 ATDLHERYPEVPFFLQVGNTNLSSENEKGLLNQLITDYEKLIDTVTESERLNNVRVLPQL 228 Query: 205 HKF 207 H + Sbjct: 229 HTY 231 >gi|167461680|ref|ZP_02326769.1| Radical SAM domain protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 245 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 16/148 (10%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ +C +CD+ F G Sbjct: 1 MTNIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCSWCDSSFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + + + D++EE G K + ++GG P LL L+ L +G A+ET Sbjct: 49 SGKDQIRMLSPEDIVEELKRLGGKRFSHVTISGGNPVLLSQMGKLVSLLQSQGIRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIK 144 G+ + +D + +SPK Sbjct: 109 QGSKWQDWLLAVDDVTLSPKPPSSGMTT 136 >gi|313891412|ref|ZP_07825028.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Dialister microaerophilus UPII 345-E] gi|313120187|gb|EFR43363.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Dialister microaerophilus UPII 345-E] Length = 226 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 86/229 (37%), Gaps = 45/229 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + I EIF +++GEG G +A+F R + CNL +C +CDT + Sbjct: 11 FHIVEIFDSIEGEGKRTGYMAIFVRLASCNL-----------RCTYCDTSYALTLKDTKE 59 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 + +L + I + TGGEP+L + + L K G+EI +ET+G+I Sbjct: 60 ILSEKELIEKIHS------YPWKKITFTGGEPMLHPLQNICETLGKEGYEINIETSGSIP 113 Query: 124 P----PQGIDWICVSPKAGCD-----------LKIKGGQELKLVF-------PQVNVSPE 161 P + + + K K+ LK V + Sbjct: 114 LFDKRPPNL-FYTMDFKCTGSGMKQYMIEENFEKLNKDDVLKFVVGDLTDLGDMRKIIKT 172 Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208 Y + RF + P+ G L ++Y + + VQ HK I Sbjct: 173 KYNNVEQPRFYVSPVWGKIKP--VEL-VNYVKNHKMTNVCVQVQLHKII 218 >gi|298694039|gb|ADI97261.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus subsp. aureus ED133] gi|302332420|gb|ADL22613.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein [Staphylococcus aureus subsp. aureus JKD6159] Length = 237 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 33/195 (16%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + + ++ +E G + ++GG P L++ L+ +G A+ET Sbjct: 49 SAKSDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108 Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169 G+ P ID + +SPK ++L V Q + V + +DF Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVITQCVPSSLNLKVVVFDDKDYDFA 168 Query: 170 R----------FSLQ 174 + F LQ Sbjct: 169 KMIHHRYPDIPFYLQ 183 >gi|83951567|ref|ZP_00960299.1| radical SAM domain protein [Roseovarius nubinhibens ISM] gi|83836573|gb|EAP75870.1| radical SAM domain protein [Roseovarius nubinhibens ISM] Length = 236 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 87/242 (35%), Gaps = 47/242 (19%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M I EIF T+QGEG G VF R GC+ +C +CDT + Sbjct: 1 MSSLRISEIFGPTIQGEGILIGEPTVFVRAGGCDY-----------RCSWCDTPHA-VDS 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + D+ +E + + L+GG P +Q PLI +G+ A ET Sbjct: 49 EHRSSWTPMTTFDIWDEIQRLSDGQPLTVSLSGGNPAIQDFGPLIALGRAQGYRFACETQ 108 Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQE---------------LKLV-FPQVNVSPE 161 G+I +D + +SPK + + LK+V F + + Sbjct: 109 GSIARGWFNVLDTLVLSPKPPSSGERPDWEAFDACLRAGANAGRTILKIVIFDDEDYNWA 168 Query: 162 NYIGFDFERFSL------------QPMDGPFLEENTNLAISYCFQNPKW---RLSVQTHK 206 + F L QP+D P + + L ++ W R+ Q H Sbjct: 169 KTVQARFPGLPLFLQPGNPEIDPAQPVDLPAMADRLRLLTERAMRD-GWFSVRILPQLHV 227 Query: 207 FI 208 FI Sbjct: 228 FI 229 >gi|319401217|gb|EFV89432.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus epidermidis FRI909] Length = 237 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 34/216 (15%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + + ++ E G + ++GG P L++ L+ ++ A+ET Sbjct: 49 SAKEDIKLMTAEEIYEALLEIGGHRFNHVTISGGNPALIKGIQELVDLFEEKHIYTALET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169 G+ ID + +SPK + L V Q + V + +DF Sbjct: 109 QGSRFQSWMTQIDDLTISPKPPSSGMKTNLEVLDSVINQCTFHSLNLKVVIFDDADYDFA 168 Query: 170 R----------FSLQPMDGPFLEENTNLAISYCFQN 195 + F LQ + P+L++N + + Sbjct: 169 KLIHHRYPNIPFYLQ-VGNPYLDDNVDQHTDKLLER 203 >gi|329121407|ref|ZP_08250032.1| radical SAM domain protein [Dialister micraerophilus DSM 19965] gi|327469697|gb|EGF15164.1| radical SAM domain protein [Dialister micraerophilus DSM 19965] Length = 226 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 54/228 (23%), Positives = 86/228 (37%), Gaps = 43/228 (18%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + I EIF +++GEG G +A+F R + CNL +C +CDT + Sbjct: 11 FHIVEIFDSIEGEGKRTGYMAIFVRLASCNL-----------RCTYCDTSYALTLKDTKE 59 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 + +L + I + TGGEP+L + + L K G+EI +ET+G+I Sbjct: 60 ILSEKELIEKIHS------YPWKKITFTGGEPMLHPLQNICETLGKEGYEINIETSGSIP 113 Query: 124 PPQG--------IDWICVSP--KAGCD----LKIKGGQELKLVF-------PQVNVSPEN 162 +D+ C K K+ LK V + Sbjct: 114 LFDKRPPNLFYTMDFKCTGSGMKQHMIEENFEKLNKDDVLKFVVGDLTDLGDMRKIIKIK 173 Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208 Y + RF + P+ G L ++Y + + VQ HK I Sbjct: 174 YNNAEQPRFYVSPVWGKIKP--VEL-VNYVKDHKMTNVCVQVQLHKII 218 >gi|125975585|ref|YP_001039495.1| radical SAM family protein [Clostridium thermocellum ATCC 27405] gi|256005910|ref|ZP_05430855.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360] gi|281416597|ref|ZP_06247617.1| Radical SAM domain protein [Clostridium thermocellum JW20] gi|125715810|gb|ABN54302.1| Radical SAM [Clostridium thermocellum ATCC 27405] gi|255990114|gb|EEU00251.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360] gi|281407999|gb|EFB38257.1| Radical SAM domain protein [Clostridium thermocellum JW20] gi|316939704|gb|ADU73738.1| Radical SAM domain protein [Clostridium thermocellum DSM 1313] Length = 210 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 93/231 (40%), Gaps = 57/231 (24%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIFL++QGE AG VF RF+GCNL +C +CDT + +G Sbjct: 2 KVNEIFLSIQGESLSAGFPTVFVRFTGCNL-----------RCSYCDTRYAYKEGED--- 47 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 ++ + I++ + LTGGEPLLQ ++ L++ L+ + + +ETNG++ Sbjct: 48 MTPSEVFEEIKKL------HYKRVCLTGGEPLLQKELGQLLEFLDD--YIVTIETNGSVS 99 Query: 124 PPQGIDWICVSPKAG--CDLKIKGG-----------------QELKLVFPQVNVSPENYI 164 + ++ PK D+K+ E+K V + ++ Sbjct: 100 L-KSVELKN--PKHSYVMDMKVPSSGCSDQMLFENFDLLRDNDEIKFVI--GSRVDYDWA 154 Query: 165 GFDFERF------SLQPMDGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFI 208 ++ + P+ G + + + R VQ HK I Sbjct: 155 KNIISKYHKKGTVTFSPVYGKIDYSG---IVKWILEDKLDARFQVQLHKVI 202 >gi|288556797|ref|YP_003428732.1| hypothetical protein BpOF4_19005 [Bacillus pseudofirmus OF4] gi|288547957|gb|ADC51840.1| hypothetical protein BpOF4_19005 [Bacillus pseudofirmus OF4] Length = 236 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 85/220 (38%), Gaps = 37/220 (16%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 MK + EIF T+QGEG G+ +F R GC+ +C +CD+ F Sbjct: 1 MKKIPVMEIFGPTIQGEGMVIGQKTMFVRTGGCDY-----------RCSWCDSAFTWDGT 49 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118 K +++ I++ G + ++GG P + + L+ L G + AVET Sbjct: 50 GKSNLMTAEEI---IKQLKEIGGDRFSHVTISGGNPAIHQGIGKLVSFLKSLGIKTAVET 106 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELK---------------LVFPQVNVSPE 161 G++ E + + +SPK +L +VF + ++ Sbjct: 107 QGSLWQEWMMEVSDVTISPKPPSSKMETDFDKLDYYIDRLKDQHVSLKVVVFTEEDLEYA 166 Query: 162 NYIGFDFERF--SLQP-MDGPFLEENTNLAISYCFQNPKW 198 +I + LQ D EN +L IS+ +W Sbjct: 167 KHIHERYPEIPMYLQVGNDEVESVENDSL-ISHLLDRYEW 205 >gi|16082343|ref|NP_394815.1| ATP binding cassette transporter, ExsD protein related [Thermoplasma acidophilum DSM 1728] gi|10640702|emb|CAC12480.1| ATP binding cassette transporter, ExsD protein related [Thermoplasma acidophilum] Length = 209 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 87/223 (39%), Gaps = 43/223 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF ++QGEG +AG +F R + CN +C +CDT + G Sbjct: 3 ITEIFHSIQGEGPYAGLPMLFVRTNVCN-----------IRCEWCDTKYSFY---GGKEI 48 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 + +L +++E + TGGEPL+Q D + ++++ G + +ETNGTI Sbjct: 49 PLSELLGIVKEAKEG------WVCFTGGEPLVQRDALAFVKSVVDMGKNVLIETNGTISI 102 Query: 125 PQ---------GIDWICVSPKAGCDLKIKGGQEL-KLVFPQVNVSPENYIGFDFE----- 169 +D S K + + L K + ++ + + + F + Sbjct: 103 RNFVFSDRIFIDMDVKPPSAKVTKGFLMDNLRYLRKQDYLKIVIKDDTDLDFAIDFVDRY 162 Query: 170 ----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 F QP G + + + R+ Q HK I Sbjct: 163 GEGLSFVFQPAWGSDIRRIADRIVGT---GYNVRVLPQIHKII 202 >gi|310780054|ref|YP_003968386.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926] gi|309749377|gb|ADO84038.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926] Length = 222 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 89/237 (37%), Gaps = 57/237 (24%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + E F+++ GEG +G +AVF R +GCNL +C +CDT + Sbjct: 3 YKVVETFVSINGEGKKSGELAVFIRLAGCNL-----------RCSYCDTMWANQDDVVFK 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALN-KRGFEIAVETNGT 121 + +++ D I+ +T LTGGEPL+Q V LI L I VETNG+ Sbjct: 52 SMSKEEIYDYIKSTGVT------NVTLTGGEPLIQEGVGELIDYLLTDEKLCIEVETNGS 105 Query: 122 IEPPQ-----------GIDWICVSPKAGCDLK-----------IKGGQELKLVF------ 153 + + +D+ K L + +K V Sbjct: 106 VAIQKFRKNHGRRLSFTMDY-----KGSSSLMEEKMLLKNFETLTEHDTVKFVVGNEYDL 160 Query: 154 PQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 + + Y + P+ +E T + + N K RL +Q HK I Sbjct: 161 SKAKDLIDKYHLTEVCHVFFSPIY-KEIEGET--IVEFMKTNKLNKVRLQIQLHKII 214 >gi|310639673|ref|YP_003944431.1| coenzyme pqq synthesis-like protein [Paenibacillus polymyxa SC2] gi|309244623|gb|ADO54190.1| Coenzyme PQQ synthesis-like protein [Paenibacillus polymyxa SC2] Length = 237 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 17/164 (10%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + E+F T+QGEG G +F R GC+ +C +CD+ F Sbjct: 1 MSKLPVIELFGPTIQGEGSVIGLKTMFVRLYGCDY-----------KCSWCDSAFTWDGS 49 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVE 117 +K + L ++I++ G Y ++GG P L LI L+KR +I VE Sbjct: 50 SKSSIQRLTSL-EIIDKLNSIGLDGCTYVTISGGNPALYNEPLYDLISELHKRSKKIIVE 108 Query: 118 TNGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159 T G+I + +D + +SPK L + L+ +F + S Sbjct: 109 TQGSIWKDWFNDVDILTISPKPPSSLMTTDWKVLRFIFANLQHS 152 >gi|320546946|ref|ZP_08041247.1| ExsD protein [Streptococcus equinus ATCC 9812] gi|320448348|gb|EFW89090.1| ExsD protein [Streptococcus equinus ATCC 9812] Length = 237 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 65/166 (39%), Gaps = 21/166 (12%) Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + EIF T QGEG G+ +F R GC+ C +CD+DF K Sbjct: 7 TIPVLEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCAWCDSDFTWNGSEK 55 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETN 119 R D++ I E G + Y L+GG P L L+ L RG + +ET Sbjct: 56 PNRMTADEI---IAELDRLGTYD--YVTLSGGNPCLLGASMGELVTKLKARGVTLGIETQ 110 Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY 163 G+ + ID + +SPK + L + Q+ + Sbjct: 111 GSRWQTWLKDIDQVTLSPKPPSSKMTVNFETLDFIVSQLEKDQHTF 156 >gi|167747133|ref|ZP_02419260.1| hypothetical protein ANACAC_01846 [Anaerostipes caccae DSM 14662] gi|167654093|gb|EDR98222.1| hypothetical protein ANACAC_01846 [Anaerostipes caccae DSM 14662] Length = 222 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 99/232 (42%), Gaps = 46/232 (19%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M+++ I E F+++ GEG AGR+++F R GCNL C +CDT + + Sbjct: 1 MEVFKIAESFVSINGEGKKAGRLSMFIRLRGCNL-----------NCSYCDTKWAISKKG 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LI-QALNKRGFEIAVET 118 + +++ +++E + LTGGEPLL ++ LI L+ E+ +ET Sbjct: 50 EAELMTAAEVSQMVKESGV------DLVTLTGGEPLLDENISGLIGSILSLPKMELEIET 103 Query: 119 NGTIEPPQ----------GIDWICVSPKAGCDLKIKGGQELK--LVFPQVNVSPENYIGF 166 NG+I +D+ S + ++ +ELK V V + E+ Sbjct: 104 NGSIPIRPWRERDARLSMTMDYKLPSSGMEESMCLENMEELKPWDVVKFVIGTREDLEKA 163 Query: 167 D--FERFSL--------QPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHK 206 ERFSL P+ G + + + ++ K R +Q HK Sbjct: 164 KEVIERFSLCEKAIVYFSPVFGAIPPD---EIVEFMKEHRMNKVRFQIQIHK 212 >gi|228477559|ref|ZP_04062192.1| pyruvate-formate lyase-activating enzyme [Streptococcus salivarius SK126] gi|228250703|gb|EEK09901.1| pyruvate-formate lyase-activating enzyme [Streptococcus salivarius SK126] Length = 247 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 21/159 (13%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T QGEG G+ +F R +GC+ C +CD+ F K Sbjct: 18 LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 66 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120 R D++ + ++ Y L+GG P L L+ L RG +AVET G Sbjct: 67 TRMTADEVIEALDALGTYD-----YVTLSGGNPALLAANMAELVSKLKARGVTLAVETQG 121 Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 + E + ID + +SPK + L + Q++ Sbjct: 122 SRWQEWLKDIDQVTLSPKPPSSKMEVNMETLDFIVSQLD 160 >gi|206967568|ref|ZP_03228524.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus cereus AH1134] gi|206736488|gb|EDZ53635.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus cereus AH1134] Length = 238 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 16/160 (10%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 + + D+ +E G + + ++GG P L ++ L+ L + G A+ET Sbjct: 49 SAKDQIRQMTPEDIWDELVAIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156 G+ + ID + +SPK +L + ++ Sbjct: 109 QGSKWQDWLLQIDEVTISPKPPSSTMKTDFHKLDAIIQKL 148 >gi|75759343|ref|ZP_00739440.1| Queuosine biosynthesis protein QueE [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896375|ref|YP_002444786.1| radical SAM domain protein [Bacillus cereus G9842] gi|74493175|gb|EAO56294.1| Queuosine biosynthesis protein QueE [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542694|gb|ACK95088.1| radical SAM domain protein [Bacillus cereus G9842] Length = 238 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 16/160 (10%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 + + D+ +E G ++ + ++GG P L ++ L+ L + G A+ET Sbjct: 49 SAKNQIRQMTAEDIWDELVAIGGEKFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156 G+ + ID + +SPK Q+L + ++ Sbjct: 109 QGSKWQDWLLQIDEVTISPKPPSSTMKTDFQKLDAIIQKL 148 >gi|322434490|ref|YP_004216702.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9] gi|321162217|gb|ADW67922.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9] Length = 227 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 88/235 (37%), Gaps = 54/235 (22%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 E++ ++QGE G +F RF+GCNL +C +CD+++ T G + Sbjct: 5 ELYKSVQGESSFTGLPCIFVRFAGCNL-----------RCAWCDSEYTF---TGGNPFTQ 50 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPP 125 +++ IE + TGGEP+L +PL+ L +G+ + +ET+G Sbjct: 51 EEVIAQIE-----ALAPCKLVEFTGGEPMLHAKELLPLMDVLLTQGYTLMMETSGERPLD 105 Query: 126 -------QGIDWICV-------SPKAGCDLKIKGGQELKLV--------FPQVNVSPENY 163 + +D C S + + E+K V F + ++ Sbjct: 106 LVPKAVHKIVDVKCPGAGAAANSFRLSNLETLTKNDEVKFVLTNRADYEFARAFIAEHRL 165 Query: 164 IGFDFERFSLQPMDGPF------LEENT---NLAISYCFQN-PKWRLSVQTHKFI 208 L P +E T + + + RLS+Q HKFI Sbjct: 166 NDLAAGVL-LSPAFTKNPSPLRTVENATLDPRTLVEWMMHDGVDARLSLQIHKFI 219 >gi|27467403|ref|NP_764040.1| coenzyme PQQ synthesis-like protein [Staphylococcus epidermidis ATCC 12228] gi|251810140|ref|ZP_04824613.1| queuosine biosynthesis protein [Staphylococcus epidermidis BCM-HMP0060] gi|282875714|ref|ZP_06284585.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus epidermidis SK135] gi|293368166|ref|ZP_06614796.1| ExsD protein [Staphylococcus epidermidis M23864:W2(grey)] gi|27314946|gb|AAO04082.1|AE016745_181 coenzyme PQQ synthesis-like protein [Staphylococcus epidermidis ATCC 12228] gi|251806332|gb|EES58989.1| queuosine biosynthesis protein [Staphylococcus epidermidis BCM-HMP0060] gi|281295741|gb|EFA88264.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus epidermidis SK135] gi|291317700|gb|EFE58116.1| ExsD protein [Staphylococcus epidermidis M23864:W2(grey)] gi|329723242|gb|EGG59772.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus epidermidis VCU144] gi|329735618|gb|EGG71902.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus epidermidis VCU045] gi|329736802|gb|EGG73067.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus epidermidis VCU028] Length = 237 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 47/216 (21%), Positives = 82/216 (37%), Gaps = 34/216 (15%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + + ++ + G + ++GG P L++ L+ + A+ET Sbjct: 49 SAKEDIKLMTAEEIYDALLEIGGHRFNHVTISGGNPALIKGIQELVDLFEDKHIYTALET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169 G+ ID + +SPK + L V Q + V + +DF Sbjct: 109 QGSRFQSWMTQIDDLTISPKPPSSGMKTNLEILDSVINQCTFHSLNLKVVIFDDADYDFA 168 Query: 170 R----------FSLQPMDGPFLEENTNLAISYCFQN 195 + F LQ + P+L++N + + Sbjct: 169 KLIHHRYPNIPFYLQ-VGNPYLDDNVDQHTDKLLER 203 >gi|293376550|ref|ZP_06622778.1| radical SAM domain protein [Turicibacter sanguinis PC909] gi|325839435|ref|ZP_08166874.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Turicibacter sp. HGF1] gi|292644776|gb|EFF62858.1| radical SAM domain protein [Turicibacter sanguinis PC909] gi|325490555|gb|EGC92871.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Turicibacter sp. HGF1] Length = 222 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 88/231 (38%), Gaps = 42/231 (18%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +Y + E F+++ GEG AG++A F RF CNL +C +CDT + +G Sbjct: 1 MYQVIEKFISIDGEGPCAGQLAAFIRFKNCNL-----------RCDWCDTCYSYDGSVEG 49 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQAL-NKRGFEIAVETNG 120 + ++ ++E + + LTGGEPL+Q + LI L + I +ETNG Sbjct: 50 ENLSPLEIYHFVKENKVN------HVTLTGGEPLIQPQIEVLIGILAADKELTIHIETNG 103 Query: 121 TIEPPQGIDWICVSP-------KAGCDLKIKGGQEL------KLVFPQVNVSPENYIGFD 167 ++ + S K L + K + ++ + + Sbjct: 104 SVNIQRFKKKFSKSNVVFILDYKLPNSLMQSRMDDENFKWVTKTDVYKFVIASQEDLKVA 163 Query: 168 FERF--------SLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 E L N +L + Y + RL +Q HK+I Sbjct: 164 HEVIREQGLLERCLVYFSPVVDYINPSLIVDYMKDHQLNDVRLQLQLHKYI 214 >gi|194334507|ref|YP_002016367.1| radical SAM domain-containing protein [Prosthecochloris aestuarii DSM 271] gi|194312325|gb|ACF46720.1| Radical SAM domain protein [Prosthecochloris aestuarii DSM 271] Length = 222 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 90/234 (38%), Gaps = 49/234 (20%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIFL++QGE AG VF R +GC S++C +CDT + GT Sbjct: 3 RTLLINEIFLSIQGESSRAGYPCVFVRLTGC-----------SSRCTWCDTRYAMTNGT- 50 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 L ++I+ + +TGGEPL Q +V PL+Q L RG+ + +ET G Sbjct: 51 -----TTSLQNIID---TIAGFKTPLVEITGGEPLEQENVYPLMQQLCNRGYNVMLETGG 102 Query: 121 TIEPPQGIDWIC---VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------- 169 P +D + K E + + P F+F+ Sbjct: 103 -FHPVSRVDHRVHKIIDLKPPSSGSSSNNHETNIRIA-LKAPPAEQALFEFKIVIAGKED 160 Query: 170 -RFSLQPMDGPFLEENTNLAISYC--------------FQNPKWRLSVQTHKFI 208 ++ + + + E+ + + + R+ +Q HK+I Sbjct: 161 YEWATRLLQRTRINEHCPVVMGTVFSELSPAILASWILKDHLNVRMQLQLHKYI 214 >gi|322373082|ref|ZP_08047618.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Streptococcus sp. C150] gi|321278124|gb|EFX55193.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Streptococcus sp. C150] Length = 238 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 83/240 (34%), Gaps = 52/240 (21%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T QGEG G+ +F R +GC+ C +CD+ F K Sbjct: 9 LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120 R D++ ++ Y L+GG P L L+ L RG +AVET G Sbjct: 58 TRMTADEVIAALDALGTYD-----YVTLSGGNPALLAANMAELVSKLKARGVTLAVETQG 112 Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-------VSPENYIGFDFERF 171 + E + ID I +SPK + L + Q++ V + DF + Sbjct: 113 SRWQEWLRDIDQITLSPKPPSSKMEVNLETLDFIVSQLDPDKVTFKVPVFDDADLDFAKM 172 Query: 172 SLQPMDGP---FLEENTNL------AISYCFQNP--------------KWRLSVQTHKFI 208 +Q P FL + Y + R+ Q H + Sbjct: 173 -IQERYQPDVMFLSAGNPEPKAEGNIVQYQLERLKELWETVAADDSWGNVRVLPQLHTLL 231 >gi|187735213|ref|YP_001877325.1| Radical SAM domain protein [Akkermansia muciniphila ATCC BAA-835] gi|187425265|gb|ACD04544.1| Radical SAM domain protein [Akkermansia muciniphila ATCC BAA-835] Length = 227 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 81/224 (36%), Gaps = 44/224 (19%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 EIF ++QGEG G VF R +GCNL C +CDT + G R Sbjct: 12 EIFHSIQGEGVSQGTPCVFLRLAGCNL-----------ACSWCDTAYSWNGTVPGVRLAP 60 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQG 127 ++ A+L+ R VLTGGEPL+Q + +ETNGTI P Sbjct: 61 EKAAELVL------HYPCRRLVLTGGEPLIQQKALPALLRLLPDHAVEMETNGTIMPDTE 114 Query: 128 ----IDWICVSPKA----GCDLKIKGGQEL-----------KLVFP-----QVNVSPENY 163 + VSPK D+K L K V + + + Sbjct: 115 LLKRVTQFNVSPKLPHSGNNDVKTWKPDILRCLAGTEKAWFKFVVACEDDVRAVLQRASE 174 Query: 164 IGFDFERFSLQPMDGPFLEENT--NLAISYCFQNPKWRLSVQTH 205 ER + P+ E N A+ +C R S + H Sbjct: 175 ADIPPERILIMPLASTRDELNAMRPQAVEWCL-RYGLRFSDRLH 217 >gi|85707174|ref|ZP_01038261.1| hypothetical protein ROS217_16361 [Roseovarius sp. 217] gi|85668333|gb|EAQ23207.1| hypothetical protein ROS217_16361 [Roseovarius sp. 217] Length = 240 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 72/192 (37%), Gaps = 32/192 (16%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G+ VF R GC+ +C +CD+ ++ Sbjct: 5 IRVSEIFGPTIQGEGALIGQPTVFVRTGGCDY-----------RCSWCDSLHA-VESAYR 52 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + ++ E L+GG P +Q LI + +G+ A+ET G++ Sbjct: 53 ETWVPMSAEAVMAEVVRLSGGRAIMVTLSGGNPAIQPLGALIDLGHAQGYRFAMETQGSV 112 Query: 123 --EPPQGIDWICVSPKAGCDLKIK--------------GGQELKL-VFPQVNVSPENYIG 165 + +D + +SPK + LK+ VF +V+ + Sbjct: 113 ARDWFAALDMLVLSPKPPSSSMVVDWALFEECVAAAKGAASVLKIVVFDEVDYQWARQVA 172 Query: 166 FDFER--FSLQP 175 + LQP Sbjct: 173 GRYPHLPLYLQP 184 >gi|327398276|ref|YP_004339145.1| Radical SAM domain-containing protein [Hippea maritima DSM 10411] gi|327180905|gb|AEA33086.1| Radical SAM domain protein [Hippea maritima DSM 10411] Length = 211 Score = 134 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 54/220 (24%), Positives = 82/220 (37%), Gaps = 37/220 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF ++QGEG G A+F R GCNL +C FCDT + + Sbjct: 5 VSEIFYSIQGEGSKIGYKAIFIRLCGCNL-----------KCPFCDTKYAL---SCKNPM 50 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125 N ++ + I + + TGGEP L+ + + +ETNGT+ P Sbjct: 51 NAHEIYEKISR------FPAKNIIFTGGEPTLKDNFMAYFMKKYNNYSYFLETNGTLFPK 104 Query: 126 QGIDW---ICVSPKAGCD--------LKIKGGQELKLVFPQVNVSPENYIGFDFERFS-L 173 + I+ I VSPK +K E K V + + + + Sbjct: 105 KSINLFSHIVVSPKMFAINLDVLKSLIKYSISIEFKFVVDENFTKELELMEELGLKEATF 164 Query: 174 QPMDGPFLEEN----TNLAISYCFQNP-KWRLSVQTHKFI 208 QP+ E+ T I P R+ Q HK + Sbjct: 165 QPVWLNDSMESYIKKTVRIIEKLKDIPYNIRIIPQIHKIL 204 >gi|239832976|ref|ZP_04681305.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Ochrobactrum intermedium LMG 3301] gi|239825243|gb|EEQ96811.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Ochrobactrum intermedium LMG 3301] Length = 246 Score = 134 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 80/221 (36%), Gaps = 36/221 (16%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 8 TRIRIAEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESR 55 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + + + +E + L+GG P +Q PLI+ K G+ A+ET G Sbjct: 56 FRHEWKTMSVEAIWDEVTALSRNKPLTVSLSGGNPAIQPLGPLIEHGRKHGYRFALETQG 115 Query: 121 TIE--PPQGIDWICVSPKAGCDLK------IKGGQE---------LKLV-FPQVNVSPEN 162 ++ +D + +SPK + E LK V F + + Sbjct: 116 SVVQGWFSALDTLVLSPKPPSSAMDTDFDALAACIEAAGNTPRTVLKFVIFDDADYAFAK 175 Query: 163 YIGFDFERF--SLQPMD-GPFLEENTNLAISY--CFQNPKW 198 + LQP + P E + AI + +W Sbjct: 176 EVANRHPHLPVYLQPGNHTPPPPEANDAAIDIDGIMRRMEW 216 >gi|242242077|ref|ZP_04796522.1| organic radical-activating protein [Staphylococcus epidermidis W23144] gi|242234462|gb|EES36774.1| organic radical-activating protein [Staphylococcus epidermidis W23144] Length = 237 Score = 134 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 34/216 (15%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + + ++ E G + ++GG P L++ L+ ++ A+ET Sbjct: 49 SAKEDIKLMTAEEIYEALLEIGGHRFNHVTISGGNPALIKGIQELVNLFEEKHIYTALET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169 G+ ID + +SPK + L V Q + V + +DF Sbjct: 109 QGSRFQSWMTQIDDLTISPKPPSSGMKTNLEVLDSVINQCTFHSLNLKVVIFDDADYDFA 168 Query: 170 R----------FSLQPMDGPFLEENTNLAISYCFQN 195 + F LQ + P+L++N + + Sbjct: 169 KLIHHRYPNIPFYLQ-VGNPYLDDNVDQHTDKLLER 203 >gi|94266661|ref|ZP_01290338.1| Radical SAM [delta proteobacterium MLMS-1] gi|93452708|gb|EAT03259.1| Radical SAM [delta proteobacterium MLMS-1] Length = 224 Score = 134 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 30/182 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF ++QGE AG +F R +GCNL +C +CD + + G Y Sbjct: 9 LSEIFYSIQGESTLAGYPCLFIRLAGCNL-----------RCSYCDARYTYEE--PGQSY 55 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE- 123 +++ + + E G + +TGGEPLLQ V PL+ L RG ++ +ETNGT Sbjct: 56 SLEGVLKAMAEVGP-GGRPVELVEITGGEPLLQEGVYPLLDVLLARGHQVLLETNGTRSL 114 Query: 124 --PPQGI----DWICVSPKAGCDL------KIKGGQELKLVFPQVNVSPENYIGFDFERF 171 P + D C + L ++ G E+K V + + ++ Sbjct: 115 ARLPAAVRCIMDIKCPASGMAAHLMPENLHRLTGDDEIKFVI--SDRADYDWAKALLNHH 172 Query: 172 SL 173 L Sbjct: 173 QL 174 >gi|86740458|ref|YP_480858.1| radical SAM family protein [Frankia sp. CcI3] gi|86567320|gb|ABD11129.1| Radical SAM [Frankia sp. CcI3] Length = 251 Score = 134 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 81/202 (40%), Gaps = 24/202 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ---GTK 61 + EIF T+QGEG GR VF R GCNL C +CDT + Sbjct: 21 VNEIFGPTVQGEGPSTGRRCVFLRLGGCNLT-----------CSWCDTPYTWDWWGVSDT 69 Query: 62 GGRYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQV--DVPLIQALNKRGFEIAV 116 G R++ + + + G V++GGEPL Q + L+ L G E+ + Sbjct: 70 GRRFDPGRELHAMSAAQVGDRLRGLGSGLVVISGGEPLSQQRRLLGLVTGLVDDGIEVEI 129 Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176 ETNGT+ P + + V+ L G E + + P+ + + G RF Sbjct: 130 ETNGTVAPLEELAESGVAFNVSVKLAHSGVAEPRRLVPEALAA---FAGNPSARFKFVCA 186 Query: 177 DGPFLEENTNLAISYCFQNPKW 198 D L+E L + P W Sbjct: 187 DRDDLDEVGTLVDRFNLA-PVW 207 >gi|13541127|ref|NP_110815.1| organic radical activating protein [Thermoplasma volcanium GSS1] gi|14324514|dbj|BAB59441.1| hypothetical protein [Thermoplasma volcanium GSS1] Length = 209 Score = 134 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 87/224 (38%), Gaps = 47/224 (20%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I EIF ++QGEG G +F R + CN +C +CDT + G + Sbjct: 3 ITEIFHSIQGEGTLIGIPMLFVRTNVCN-----------IRCEWCDTKYSFYGGREIALS 51 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124 ++ + +EQW TGGEPL+Q D + ++ K G +I +ETNGT+ Sbjct: 52 DILNIVKEAKEQW---------VCFTGGEPLVQRDALSFVEGSLKLGKKILIETNGTVPI 102 Query: 125 PQ-------GIDWICVSPKAGCDLKIKGGQE-LKLV--FPQVNVSPENYIGFDFE----- 169 +D SP ++ +E LK + + + ++ DF Sbjct: 103 RNFTISDNIVLDVDVKSP--SAKVRKPFLEENLKYIRDTDYLKIVIKDREDLDFAINFIR 160 Query: 170 ------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207 + LQP G + + + + R+ Q HK Sbjct: 161 GHRKNLNYVLQPAWGSDIRMIADAIVET---DLNVRVLPQLHKI 201 >gi|315645295|ref|ZP_07898420.1| radical SAM domain protein [Paenibacillus vortex V453] gi|315279337|gb|EFU42643.1| radical SAM domain protein [Paenibacillus vortex V453] Length = 244 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 81/205 (39%), Gaps = 28/205 (13%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ Sbjct: 8 IPVLEIFGPTVQGEGLVIGQKTMFVRTAGCDY-----------SCSWCDSSFTW-DGSAK 55 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 + +E G + ++GG P L ++ L+ L+ +G + +ET G+ Sbjct: 56 NEIKQLSAQTIYDELNSLGGTTFEHVTISGGNPALIKNIGYLVDLLHDKGIRVGLETQGS 115 Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP-ENYIGFDFERFSLQPMDG 178 + ID + VSPK I L V +N SP E I Sbjct: 116 RWQDWMADIDDLTVSPKPPSSGMITDWDRLDGVIKNLNNSPNEICIKVVI---------- 165 Query: 179 PFLEENTNLAISYCFQNPKWRLSVQ 203 F E++ AI + P RL +Q Sbjct: 166 -FDEDDLQYAIKVHKRYPHMRLVLQ 189 >gi|167768058|ref|ZP_02440111.1| hypothetical protein CLOSS21_02602 [Clostridium sp. SS2/1] gi|317498354|ref|ZP_07956650.1| radical SAM superfamily protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167710387|gb|EDS20966.1| hypothetical protein CLOSS21_02602 [Clostridium sp. SS2/1] gi|291561057|emb|CBL39857.1| Organic radical activating enzymes [butyrate-producing bacterium SSC/2] gi|316894359|gb|EFV16545.1| radical SAM superfamily protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 222 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 57/232 (24%), Positives = 91/232 (39%), Gaps = 46/232 (19%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M+ + + E F+++ GEG AGR+A+F R GCNL C +CDT + + Sbjct: 1 METFKVVETFVSINGEGKKAGRLAMFIRLKGCNL-----------NCSYCDTTWANKRDA 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI-QALNKRGFEIAVET 118 + Q+ + I+E + LTGGEPLL +V LI L EI +ET Sbjct: 50 RCELLTAPQIVERIKEAGVE------LVTLTGGEPLLDENVSELIGSILMMPKVEIEIET 103 Query: 119 NGTIEP----------PQGIDWICVSPKAGCDLKIKG------GQELKLVF---PQVNVS 159 NG++ +D+ S ++ ++ +K V +N + Sbjct: 104 NGSVPIRYYKERDNRLTMTMDYKLPSSNMEENMCLENMEYLKPWDVVKFVIGSREDLNRA 163 Query: 160 PENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHK 206 E F P+ G E + + +N K R +Q HK Sbjct: 164 KEIIERFRLCEKAIVYFSPVFGKIEPE---EIVEFMKENKLNKVRFQIQIHK 212 >gi|89097396|ref|ZP_01170285.1| radical SAM domain protein [Bacillus sp. NRRL B-14911] gi|89087692|gb|EAR66804.1| radical SAM domain protein [Bacillus sp. NRRL B-14911] Length = 241 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 16/170 (9%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVMEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSSFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 T ++ E G + + ++GG P LL+ LI L K ++ +ET Sbjct: 49 TGKELIRQMDAEEIWNELKAIGGEGFSFVTISGGNPALLKNLDKLISLLKKENIQLCLET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 G+ + ID + +SPK I + L +F ++ + + Sbjct: 109 QGSRWQDWFYSIDQLTISPKPPSSGMITDFEILDDIFERLADRFTHQVSL 158 >gi|327543167|gb|EGF29602.1| radical SAM domain protein [Rhodopirellula baltica WH47] Length = 272 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 48/132 (36%), Positives = 68/132 (51%), Gaps = 19/132 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E F++ QGEG G +VF R SGCNL +C FCDT + + +G R Sbjct: 47 ISETFVSRQGEGELTGTESVFIRTSGCNL-----------RCWFCDTPYASWK-PEGTRQ 94 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP 124 ++ L L+ E + +Y VLTGGEPL+ + LI L G + +ET GT++P Sbjct: 95 TIEDLLQLVAESGV------KYVVLTGGEPLIAKGIVSLIDQLRSAGNHVTIETAGTVDP 148 Query: 125 PQGIDWICVSPK 136 D + +SPK Sbjct: 149 GARCDLLSLSPK 160 >gi|319891709|ref|YP_004148584.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus pseudintermedius HKU10-03] gi|317161405|gb|ADV04948.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus pseudintermedius HKU10-03] Length = 237 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 16/166 (9%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDF-----------RCSWCDSKFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + + + +++ + G + ++GG P L++ + A+ET Sbjct: 49 SMKDDIEMMEAEEILAQLRNIGGNRFNHVTISGGNPALIKGLQSFVDLCEANDIRTALET 108 Query: 119 NGT--IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN 162 G+ + I+ + +SPK + L V Q+++S N Sbjct: 109 QGSQFKPWMRQINDLTLSPKPPSSGMQQNLPRLDEVIEQLDISRIN 154 >gi|222082946|ref|YP_002542311.1| organic-radical-activating protein [Agrobacterium radiobacter K84] gi|221727625|gb|ACM30714.1| organic-radical-activating protein [Agrobacterium radiobacter K84] Length = 279 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 19/171 (11%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G VF R GC+ +C +CDT + Sbjct: 43 IRVSEIFGPTIQGEGILIGLPTVFVRTGGCDY-----------RCSWCDTLHA-VDSDYR 90 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + ++ ++ + L+GG P +Q PLI + G+ A+ET G++ Sbjct: 91 DQWQPMSVDEIWQDVIRLSGGKPLAVSLSGGNPAIQPLGPLIARGHGEGYSFALETQGSV 150 Query: 123 --EPPQGIDWICVSPKAGCDLKIKGG----QELKLVFPQVNVSPENYIGFD 167 + +D + +SPK + L+L + V+ + + D Sbjct: 151 AKDWFADLDTLVLSPKPPSSGMVTDWAVFDDCLRLAADKPQVALKIVVFDD 201 >gi|295695132|ref|YP_003588370.1| Radical SAM domain protein [Bacillus tusciae DSM 2912] gi|295410734|gb|ADG05226.1| Radical SAM domain protein [Bacillus tusciae DSM 2912] Length = 218 Score = 133 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 61/237 (25%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + E+F ++QGE G VF RF+GCNL +C +CDT + +GT R Sbjct: 2 KLNELFFSIQGESSSMGLPTVFVRFTGCNL-----------RCSYCDTTYAYFEGT---R 47 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQALNKRGFEIAVETNGT 121 +++ I+E + R LTGGEPL+Q L+ L +E+++ET+G+ Sbjct: 48 TTPEEIFRQIQEYGV------RRVCLTGGEPLIQPREELQQLLDLLGGNNYEVSIETDGS 101 Query: 122 IEPPQGIDWICVSPKA--GCDLKIKGG------------------QELKLV--------F 153 I+ I+ + + PK D+K+ E+K V + Sbjct: 102 ID----IERVKLRPKQRFILDIKVPSSDMHTYMDFDNLKRIVPERDEIKFVVGNEEDYLW 157 Query: 154 PQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW--RLSVQTHKFI 208 + + R P+ G + Q+ +W RL VQ HK++ Sbjct: 158 SKEIIRRYEISPERGYRLLFSPVYGVLEPRTLA---EWILQD-EWDVRLQVQLHKWL 210 >gi|152974870|ref|YP_001374387.1| radical SAM domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023622|gb|ABS21392.1| Radical SAM domain protein [Bacillus cytotoxicus NVH 391-98] Length = 238 Score = 133 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 48/209 (22%), Positives = 78/209 (37%), Gaps = 28/209 (13%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + + ++ +E G + + ++GG P LL+ L++ L + A+ET Sbjct: 49 SAKDQIRQMTPEEIWKELIEIGGENFSHVTISGGNPVLLKHMKELLERLKENNIRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV------------NVSPENYI 164 G+ E ID I +SPK L LV ++ + Y Sbjct: 109 QGSKWQEWLLDIDEITISPKPPSSKMKTNFTMLDLVVERLVDKNMSLKVVIFDDDDFEYA 168 Query: 165 GFDFERFSLQPMDGPFLEENTNLAISYCF 193 ER+ P ++T A Sbjct: 169 KNVHERYPHVPFFLQVGNDDTKTAEDAVL 197 >gi|306824721|ref|ZP_07458065.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432932|gb|EFM35904.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 238 Score = 133 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 67/159 (42%), Gaps = 21/159 (13%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T QGEG G+ +F R +GC+ C +CD+ F K Sbjct: 9 LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120 R D++ I E G + Y L+GG P L L+ L +RG +AVET G Sbjct: 58 TRMTADEV---IAELDKLGSYD--YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQG 112 Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 + + ID + +SPK + L + Q++ Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLD 151 >gi|193213357|ref|YP_001999310.1| radical SAM domain-containing protein [Chlorobaculum parvum NCIB 8327] gi|193086834|gb|ACF12110.1| Radical SAM domain protein [Chlorobaculum parvum NCIB 8327] Length = 219 Score = 133 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 56/232 (24%), Positives = 85/232 (36%), Gaps = 51/232 (21%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 SI EIF ++QGE AG F R +GC C +CDT + GT Sbjct: 5 TISISEIFHSIQGESSFAGWPCAFVRLAGC-----------GHGCNYCDTTYAEEAGTA- 52 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 +D++ + +TGGEPLLQ +V PL+ AL +G ++ +ET G Sbjct: 53 --MTIDEVV------RRALTFDAPIVEVTGGEPLLQPEVYPLLSALCDKGAKVLLETGGF 104 Query: 122 IEP-------PQGIDWICVS------------------PKAGCDLKIKGGQELKLVFPQV 156 + ID S PK + KI E ++ + Sbjct: 105 LPVNRVDPRVHTIIDIKTPSSGVAEQNCMDNIPLALASPKR-FEFKIVVASEEDYLWARD 163 Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 ++ + +G F + G LA R+ +Q HK+I Sbjct: 164 FITKQGLLGKCTLIFGT--VFGQLEPRL--LAEWILRDRLPVRMQLQLHKYI 211 >gi|322516971|ref|ZP_08069861.1| ExsD protein [Streptococcus vestibularis ATCC 49124] gi|322124454|gb|EFX95949.1| ExsD protein [Streptococcus vestibularis ATCC 49124] Length = 238 Score = 133 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 21/159 (13%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T QGEG G+ +F R +GC+ C +CD+ F K Sbjct: 9 LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120 R D++ + ++ Y L+GG P L L+ L RG +AVET G Sbjct: 58 TRMTADEVIEALDALGTYD-----YVTLSGGNPALLAANMAQLVSKLKARGVTLAVETQG 112 Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 + E + ID + +SPK + L + Q++ Sbjct: 113 SRWQEWLKDIDQVTLSPKPPSSKMEVNMETLDFIVSQLD 151 >gi|206603340|gb|EDZ39820.1| Putative radical activating enzyme [Leptospirillum sp. Group II '5-way CG'] Length = 212 Score = 133 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 55/225 (24%), Positives = 82/225 (36%), Gaps = 43/225 (19%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I E F ++QGE ++G F R +GC L +CR+CDT + G Sbjct: 2 KITETFRSIQGESRYSGWPCFFIRTTGCPL-----------RCRWCDTTYSFY---GGEE 47 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 VD L +TGGEP +Q ++P L Q L RG + +ET+G Sbjct: 48 RTVDSLV------GEAVSSGTSLVEITGGEPFVQPELPALCQKLLDRGKTVLIETSGGFS 101 Query: 124 PPQGIDWIC------VSPKAGCDLKIK--------GGQELKLVFPQVNVSPENYIGFDFE 169 P G++ C P +G + +K G E+K V + + + Sbjct: 102 VPSGLNRQCRLIVDLKPPGSGMEAWMKAENFAELGGEDEIKAVLAGRDDFDWSVQKLEEW 161 Query: 170 RFS------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 P+ G LA R+ VQ HK + Sbjct: 162 GVWGRVPVTFSPVFGECDPR--ELARWVLDSGLPIRIQVQLHKIL 204 >gi|197303437|ref|ZP_03168476.1| hypothetical protein RUMLAC_02159 [Ruminococcus lactaris ATCC 29176] gi|197297435|gb|EDY31996.1| hypothetical protein RUMLAC_02159 [Ruminococcus lactaris ATCC 29176] Length = 221 Score = 133 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 56/232 (24%), Positives = 92/232 (39%), Gaps = 48/232 (20%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + E F+++ GEG AG +AVF RF GCNL C +CDT + Sbjct: 2 KVVEKFISINGEGRRAGELAVFIRFKGCNL-----------NCSYCDTKWANEPACDYEE 50 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALN-KRGFEIAVETNGTI 122 + D + + + E I + LTGGEPLLQ D+ L++ L K + +ETNG + Sbjct: 51 LSPDDICEYVSETGI------KNVTLTGGEPLLQKDIRSLVEKLLNKSDIRVEIETNGAV 104 Query: 123 EPPQGIDWIC---VSPKAGCDLKIKGGQ-ELKLVFPQVNV-SPENYIGF----------- 166 + + +S D K+ E K++ + V ++ + F Sbjct: 105 DIAPLANAFSKEKLS--LTMDYKLPSSGCEEKMILSNMEVLRKQDTVKFVSGSVKDLECA 162 Query: 167 ----------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + + + P+ G +E + + RL +Q HK I Sbjct: 163 EKIIGKFHLTERCQVFISPVFGS-IEPVEIVNFMTSKRMNDVRLQIQMHKVI 213 >gi|311030030|ref|ZP_07708120.1| radical SAM domain-containing protein [Bacillus sp. m3-13] gi|311032350|ref|ZP_07710440.1| radical SAM domain-containing protein [Bacillus sp. m3-13] Length = 239 Score = 133 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 93/239 (38%), Gaps = 47/239 (19%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 L + EIF T+QGEG G+ +F R +GC+ +C +CD+ F G+ Sbjct: 3 SLIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCSWCDSAFTW-DGS 50 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119 + ++ E+ G K + ++GG P LL+ L+Q L++ ++A+ET Sbjct: 51 AKDDIVMMSHEEIYEQLVEIGGKAFNHVTISGGNPALLKNIGKLVQLLHENDIKVALETQ 110 Query: 120 GTI--EPPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQVNVS------PENYIGFDF 168 G+ + ID + +SPK G D ++L +VS E+ + + Sbjct: 111 GSKWQDWLMEIDDLTISPKPPSSGMDTNFSILRDLLERVKNSSVSLKVVVFDEDDLAYSK 170 Query: 169 ERFSLQP---------MDGPFLEENTNLA----------ISYCFQN---PKWRLSVQTH 205 + L P D E++ L I + R+ Q H Sbjct: 171 KVHKLYPDIAFYVQVGNDDTTTEDDQKLISNLLAKYEWLIDQVMNDDEMNNVRVLPQLH 229 >gi|32472078|ref|NP_865072.1| radical activating enzyme [Rhodopirellula baltica SH 1] gi|32397450|emb|CAD72756.1| conserved hypothetical protein-putative radical activating enzyme [Rhodopirellula baltica SH 1] Length = 257 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 19/132 (14%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I E F++ QGEG G +VF R SGCNL +C FCDT + + +G R Sbjct: 32 ISETFVSRQGEGELTGTESVFIRTSGCNL-----------RCWFCDTPYASWK-PEGTRQ 79 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP 124 ++ L L+ + + ++ VLTGGEPL+ + LI L G + +ET GT++P Sbjct: 80 TIEDLLQLVAKSGV------KHVVLTGGEPLIAKGIVSLIDQLRSAGNHVTIETAGTVDP 133 Query: 125 PQGIDWICVSPK 136 D + +SPK Sbjct: 134 GARCDLLSLSPK 145 >gi|291522438|emb|CBK80731.1| Organic radical activating enzymes [Coprococcus catus GD/7] Length = 223 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 84/234 (35%), Gaps = 48/234 (20%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + Y + E F+++ GEG AG++AVF RF GCNL C +CDT + Sbjct: 3 RTYEVVEHFVSINGEGPLAGQLAVFVRFKGCNL-----------SCLYCDTKWANEPDVP 51 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVETN 119 +++ I E + R LTGGEPL + + L++ L + +ETN Sbjct: 52 ARVMTAEEIHQAIMETGV------RNVTLTGGEPLDRPHISELLEKLAADHSLHVEIETN 105 Query: 120 GTIEPPQGIDWICVSPKAGCDLK-----------------IKGGQELKLVF------PQV 156 G++ ++ I P D K + +K V + Sbjct: 106 GSVSLAPFVN-IPNRPSFTMDYKLSCSGMETAMDTDNFSLLTEKDTVKFVTGSLADCERA 164 Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 + + P+ G + + + + L +Q HK I Sbjct: 165 VEIMKQFRLIGRCHLYFSPVFGSIDPAD---IVEFMKEQQLNGVNLQIQMHKVI 215 >gi|145591319|ref|YP_001153321.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM 13514] gi|145283087|gb|ABP50669.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 216 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 25/141 (17%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF +LQGEG + G+ AVF R +GC +C +CDT + + G Sbjct: 2 RVLEIFASLQGEGVNLGKPAVFVRLAGCP-----------IRCAYCDTKYSW-DFSAGVE 49 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQALNKRGFEIAVETNGT 121 +V+++ + G + V+TGGEPL+ L AL G + VET+G Sbjct: 50 MSVEEVFAKAASLGVRG-----HVVVTGGEPLIWQRRGLENLACALRGLG-AVEVETSGA 103 Query: 122 IEPPQ----GIDWICVSPKAG 138 P +D+ VSPK Sbjct: 104 YSPTPELDSCVDYYDVSPKLS 124 >gi|42780534|ref|NP_977781.1| radical SAM domain-containing protein [Bacillus cereus ATCC 10987] gi|42736454|gb|AAS40389.1| radical SAM domain protein [Bacillus cereus ATCC 10987] Length = 238 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 21/179 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 + + D+ E G + + ++GG P L ++ L+ L + G A+ET Sbjct: 49 SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFER 170 G+ + ID I +SPK Q+L KL +++ + +DFE Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMKTDFQKLDAMIQKLAGKDISLKVVVFDDYDFEY 167 >gi|307707501|ref|ZP_07643983.1| coenzyme PQQ synthesis [Streptococcus mitis NCTC 12261] gi|307616453|gb|EFN95644.1| coenzyme PQQ synthesis [Streptococcus mitis NCTC 12261] Length = 238 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 21/159 (13%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T QGEG G+ +F R +GC+ C +CD+ F K Sbjct: 9 LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120 R D++ +++ Y L+GG P L L+ L +RG +AVET G Sbjct: 58 TRMTADEVIAALDKLG-----NYDYVTLSGGNPAILAANMAELVTKLKERGVTLAVETQG 112 Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 + + ID + +SPK + L + Q++ Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLD 151 >gi|47566230|ref|ZP_00237258.1| Organic radical activating enzyme [Bacillus cereus G9241] gi|47556783|gb|EAL15114.1| Organic radical activating enzyme [Bacillus cereus G9241] Length = 238 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 21/179 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 + + D+ E G + + ++GG P L ++ L+ L + G A+ET Sbjct: 49 SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170 G+ + ID I +SPK Q+L + +++ + + +DFE Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMKTDFQKLDAIIQKLSGKDISLKVVVFDDYDFEY 167 >gi|322377478|ref|ZP_08051969.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Streptococcus sp. M334] gi|321281678|gb|EFX58687.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Streptococcus sp. M334] Length = 238 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 21/159 (13%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T QGEG G+ +F R +GC+ C +CD+ F K Sbjct: 9 LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120 R D++ +++ Y L+GG P L L+ L +RG +AVET G Sbjct: 58 TRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQG 112 Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 + + ID + +SPK + L + Q++ Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLD 151 >gi|325062819|gb|ADY66509.1| radical activating protein [Agrobacterium sp. H13-3] Length = 251 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 81/239 (33%), Gaps = 49/239 (20%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF T+QGEG G VF R GC+ +C +CDT + Sbjct: 15 IRISEIFGPTIQGEGLLIGLPTVFVRTGGCDY-----------RCSWCDTLHA-VDSEYR 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + +E L+GG P +Q LI G+ A+ET G+I Sbjct: 63 DTWKPMSVEAIWQEVRRLSGGVPLTVSLSGGNPAIQPLGQLIAKGQGEGYRFALETQGSI 122 Query: 123 --EPPQGIDWICVSPKA---GCDLKIKGGQE------------LKLVF---PQVNVSPEN 162 + +D + +SPK G + + ++ LK+V + Sbjct: 123 AKDWFGDLDHLVLSPKPPSSGMETDWQAFEDCLAAAGDGPQVALKIVVFDDADYAYAKAA 182 Query: 163 YIGFDFERFSLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQTH 205 F LQP + P ++N + I W R+ Q H Sbjct: 183 SARFPHLPIYLQPGNHTPPPPDDDNARVDIDGIMDRMLWLVDKVSEDRWFSARVLPQLH 241 >gi|312863321|ref|ZP_07723559.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Streptococcus vestibularis F0396] gi|311100857|gb|EFQ59062.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Streptococcus vestibularis F0396] Length = 238 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 86/242 (35%), Gaps = 56/242 (23%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T QGEG G+ +F R +GC+ C +CD+ F K Sbjct: 9 LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120 R D++ + ++ Y L+GG P L L+ L RG +AVET G Sbjct: 58 TRMTADEVIEALDALGTYD-----YVTLSGGNPALLAANMAQLVSKLKARGVTLAVETQG 112 Query: 121 TI--EPPQGIDWICVSPKAG---CDLKIK---------GGQELKLVFPQVNVSPENYIGF 166 + E + ID + +SPK ++ ++ +L P + + + Sbjct: 113 SRWQEWLKDIDQVTLSPKPPSSKMEVNMEILDFIVSQLDPDKLTFKVPVFDDADLAFAKM 172 Query: 167 DFERFSLQP-----------------MDGPFLEENTNLAISYCFQNPKW---RLSVQTHK 206 ER+ QP + L+ L + W R+ Q H Sbjct: 173 IQERY--QPDVMFLSAGNPEPKAEGNIVQHQLDRLKELW-ETVAADDSWGNVRVLPQLHT 229 Query: 207 FI 208 + Sbjct: 230 LL 231 >gi|159900637|ref|YP_001546884.1| radical SAM domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159893676|gb|ABX06756.1| Radical SAM domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 230 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 102/237 (43%), Gaps = 54/237 (22%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG--IQGTKG 62 ++ E++ ++QGEG G F RF CNL +C +CDT + +G K Sbjct: 2 NVMEVYRSVQGEGTLMGVPTTFVRFFACNL-----------RCSWCDTKYSWSVKEGGKW 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 + LA I +Q R+ VLTGGEP+LQ ++P L Q L G + VETN T Sbjct: 51 EDLPIATLAQRIADQG------ARHVVLTGGEPMLQRELPALAQTLRAAGHHLTVETNST 104 Query: 122 IEPPQGIDWI---CVSPK-AGCDLKIKGGQEL-------------KLVF------PQVNV 158 + P+ ++ I +SPK AG + + + L K V Q++ Sbjct: 105 LFRPELVELINLWSLSPKLAGANTGMLRLEPLRQFMQLPAEQQQWKFVITGESDLAQLHQ 164 Query: 159 SPENYIGFDFERFSL--QPMDGPFLEENTNLAISYCFQN---PKW-----RLSVQTH 205 + F + + QP +G + E + A+ + + P+W R+ Q H Sbjct: 165 FVSEHQAFAEAQLPIIWQP-EGRWAERDYAHALEWLAERAQLPEWRPFNVRVLPQMH 220 >gi|307705450|ref|ZP_07642305.1| pyruvate-formate lyase-activating enzyme [Streptococcus mitis SK597] gi|307620985|gb|EFO00067.1| pyruvate-formate lyase-activating enzyme [Streptococcus mitis SK597] Length = 238 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 21/159 (13%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T QGEG G+ +F R +GC+ C +CD+ F K Sbjct: 9 LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120 R D++ +++ Y L+GG P L L+ L +RG +AVET G Sbjct: 58 TRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQG 112 Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 + + ID + +SPK + L + Q++ Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLD 151 >gi|307709658|ref|ZP_07646110.1| pyruvate-formate lyase-activating enzyme [Streptococcus mitis SK564] gi|307619556|gb|EFN98680.1| pyruvate-formate lyase-activating enzyme [Streptococcus mitis SK564] Length = 238 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 21/159 (13%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T QGEG G+ +F R +GC+ C +CD+ F K Sbjct: 9 LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120 R D++ +++ Y L+GG P L L+ L +RG +AVET G Sbjct: 58 TRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQG 112 Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 + + ID + +SPK + L + Q++ Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLD 151 >gi|307707096|ref|ZP_07643893.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus mitis SK321] gi|307617622|gb|EFN96792.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus mitis SK321] Length = 238 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 21/159 (13%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T QGEG G+ +F R +GC+ C +CD+ F K Sbjct: 9 LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120 R D++ +++ Y L+GG P L L+ L +RG +AVET G Sbjct: 58 TRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQG 112 Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 + + ID + +SPK + L + Q++ Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLD 151 >gi|16078438|ref|NP_389257.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. subtilis str. 168] gi|221309238|ref|ZP_03591085.1| hypothetical protein Bsubs1_07606 [Bacillus subtilis subsp. subtilis str. 168] gi|221313566|ref|ZP_03595371.1| hypothetical protein BsubsN3_07547 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318488|ref|ZP_03599782.1| hypothetical protein BsubsJ_07481 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322761|ref|ZP_03604055.1| hypothetical protein BsubsS_07587 [Bacillus subtilis subsp. subtilis str. SMY] gi|321315129|ref|YP_004207416.1| queuosine biosynthesis enzyme [Bacillus subtilis BSn5] gi|81341926|sp|O31677|QUEE_BACSU RecName: Full=7-carboxy-7-deazaguanine synthase; Short=CDG synthase; AltName: Full=Queuosine biosynthesis protein queE gi|2633745|emb|CAB13247.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. subtilis str. 168] gi|320021403|gb|ADV96389.1| queuosine biosynthesis enzyme [Bacillus subtilis BSn5] Length = 243 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 16/165 (9%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ Sbjct: 5 IPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAK 52 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121 ++ E G + ++GG P LL+ I+ L + A+ET GT Sbjct: 53 KDIRWMTAEEIFAELKDIGGDAFSHVTISGGNPALLKQLDAFIELLKENNIRAALETQGT 112 Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYI 164 + + ID + +SPK + Q+L + + + + Sbjct: 113 VYQDWFTLIDDLTISPKPPSSKMVTNFQKLDHILTSLQENDRQHA 157 >gi|322388780|ref|ZP_08062377.1| ExsD protein [Streptococcus infantis ATCC 700779] gi|321140399|gb|EFX35907.1| ExsD protein [Streptococcus infantis ATCC 700779] Length = 238 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 67/159 (42%), Gaps = 21/159 (13%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T QGEG G+ +F R +GC+ C +CD+ F K Sbjct: 9 LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120 R D++ I E G + Y L+GG P L L+ L +RG +AVET G Sbjct: 58 TRMTADEV---IAELDKLGSYD--YVTLSGGNPAILAANMAQLVTKLKERGITLAVETQG 112 Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 + + ID + +SPK + L + Q++ Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLD 151 >gi|306842891|ref|ZP_07475527.1| Radical SAM domain protein [Brucella sp. BO2] gi|306286914|gb|EFM58434.1| Radical SAM domain protein [Brucella sp. BO2] Length = 248 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 80/219 (36%), Gaps = 36/219 (16%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 12 IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 59 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + E +K L+GG P +Q PLI+ G+ A+ET G++ Sbjct: 60 HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLAPLIEHGKAEGYRFALETQGSV 119 Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQ---------------ELKLV-FPQVNVSPENYI 164 + +D + +SPK LK V F + + + + Sbjct: 120 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKFVIFDEADYAYARAV 179 Query: 165 GFDFERF--SLQPMD-GPFLEENTNLAISY--CFQNPKW 198 + +QP + P + + AI + +W Sbjct: 180 SARHPQLPVYVQPGNHTPPPPDAEDAAIDIDGIMRRMEW 218 >gi|30261442|ref|NP_843819.1| radical SAM domain-containing protein [Bacillus anthracis str. Ames] gi|47526631|ref|YP_017980.1| radical sam domain-containing protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184276|ref|YP_027528.1| radical SAM domain-containing protein [Bacillus anthracis str. Sterne] gi|52143995|ref|YP_082833.1| radical SAM domain-containing protein [Bacillus cereus E33L] gi|65318711|ref|ZP_00391670.1| COG0602: Organic radical activating enzymes [Bacillus anthracis str. A2012] gi|118476912|ref|YP_894063.1| radical SAM domain-containing protein [Bacillus thuringiensis str. Al Hakam] gi|165870409|ref|ZP_02215064.1| radical SAM domain protein [Bacillus anthracis str. A0488] gi|167634333|ref|ZP_02392654.1| radical SAM domain protein [Bacillus anthracis str. A0442] gi|167639360|ref|ZP_02397632.1| radical SAM domain protein [Bacillus anthracis str. A0193] gi|170686800|ref|ZP_02878020.1| radical SAM domain protein [Bacillus anthracis str. A0465] gi|170706317|ref|ZP_02896778.1| radical SAM domain protein [Bacillus anthracis str. A0389] gi|177651608|ref|ZP_02934397.1| radical SAM domain protein [Bacillus anthracis str. A0174] gi|190568020|ref|ZP_03020930.1| radical SAM domain protein [Bacillus anthracis Tsiankovskii-I] gi|196035271|ref|ZP_03102676.1| radical SAM domain protein [Bacillus cereus W] gi|196040614|ref|ZP_03107913.1| radical SAM domain protein [Bacillus cereus NVH0597-99] gi|196046471|ref|ZP_03113696.1| radical SAM domain protein [Bacillus cereus 03BB108] gi|218902549|ref|YP_002450383.1| radical SAM domain protein [Bacillus cereus AH820] gi|225863305|ref|YP_002748683.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus cereus 03BB102] gi|227815811|ref|YP_002815820.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus anthracis str. CDC 684] gi|229604565|ref|YP_002865855.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus anthracis str. A0248] gi|254682495|ref|ZP_05146356.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus anthracis str. CNEVA-9066] gi|254726158|ref|ZP_05187940.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus anthracis str. A1055] gi|254733911|ref|ZP_05191625.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus anthracis str. Western North America USA6153] gi|254740399|ref|ZP_05198090.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus anthracis str. Kruger B] gi|254753789|ref|ZP_05205824.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus anthracis str. Vollum] gi|254758886|ref|ZP_05210913.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus anthracis str. Australia 94] gi|30255296|gb|AAP25305.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus anthracis str. Ames] gi|47501779|gb|AAT30455.1| radical SAM domain protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178203|gb|AAT53579.1| radical SAM domain protein [Bacillus anthracis str. Sterne] gi|51977464|gb|AAU19014.1| radical SAM domain protein [Bacillus cereus E33L] gi|118416137|gb|ABK84556.1| preQ(0) biosynthesis protein QueE [Bacillus thuringiensis str. Al Hakam] gi|164713904|gb|EDR19426.1| radical SAM domain protein [Bacillus anthracis str. A0488] gi|167512799|gb|EDR88173.1| radical SAM domain protein [Bacillus anthracis str. A0193] gi|167530221|gb|EDR92947.1| radical SAM domain protein [Bacillus anthracis str. A0442] gi|170128851|gb|EDS97717.1| radical SAM domain protein [Bacillus anthracis str. A0389] gi|170669323|gb|EDT20066.1| radical SAM domain protein [Bacillus anthracis str. A0465] gi|172082886|gb|EDT67949.1| radical SAM domain protein [Bacillus anthracis str. A0174] gi|190560754|gb|EDV14729.1| radical SAM domain protein [Bacillus anthracis Tsiankovskii-I] gi|195991948|gb|EDX55911.1| radical SAM domain protein [Bacillus cereus W] gi|196022655|gb|EDX61337.1| radical SAM domain protein [Bacillus cereus 03BB108] gi|196028404|gb|EDX67012.1| radical SAM domain protein [Bacillus cereus NVH0597-99] gi|218535375|gb|ACK87773.1| radical SAM domain protein [Bacillus cereus AH820] gi|225789486|gb|ACO29703.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus cereus 03BB102] gi|227002910|gb|ACP12653.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus anthracis str. CDC 684] gi|229268973|gb|ACQ50610.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus anthracis str. A0248] Length = 238 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 21/179 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 + + D+ E G + + ++GG P+L ++ L+ L + G A+ET Sbjct: 49 SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170 G+ + ID I +SPK Q+L V ++ + + +DFE Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEY 167 >gi|323488449|ref|ZP_08093696.1| hypothetical protein GPDM_03875 [Planococcus donghaensis MPA1U2] gi|323397956|gb|EGA90755.1| hypothetical protein GPDM_03875 [Planococcus donghaensis MPA1U2] Length = 235 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 36/195 (18%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 MK + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MK-IPVMEIFGPTVQGEGMVMGQKTMFVRTAGCDY-----------SCSWCDSKFTW-DG 47 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118 T G Q AD+IEE G + ++GG P L + L+ +++G+++AVET Sbjct: 48 T--GTSVSKQPADIIEELIHIGGSNFSHVTISGGNPALHKGIGELVDLCHQQGWKVAVET 105 Query: 119 NGTI--EPPQGIDWICVSPKAGCD-------------LKIKGGQ-ELKLV-FPQVNVSPE 161 +I E ID I +SPK K++ LK+V F Q + S Sbjct: 106 QASIWQEWMPTIDDITLSPKPPSSGMKTDFAKLDLFLEKLQTANVSLKVVIFDQDDFSYA 165 Query: 162 NYIGFDFER--FSLQ 174 ++ + F LQ Sbjct: 166 EFLHQRYPHVPFFLQ 180 >gi|83953730|ref|ZP_00962451.1| radical SAM domain protein [Sulfitobacter sp. NAS-14.1] gi|83841675|gb|EAP80844.1| radical SAM domain protein [Sulfitobacter sp. NAS-14.1] Length = 236 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 53/239 (22%), Positives = 83/239 (34%), Gaps = 47/239 (19%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M I E+F T+QGEG G VF R GC+ +C +CD+ Sbjct: 1 MSQLRIAEVFGPTIQGEGALIGEPTVFVRTGGCDY-----------RCAWCDSMHAVDPA 49 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + ++ + E + L+GG P +Q PLIQ + G+ A ET Sbjct: 50 FRHDWASMST-DAVWNEVQRLSDNTPLTVSLSGGNPAIQDFAPLIQLGHAAGYRFACETQ 108 Query: 120 GTIEPP--QGIDWICVSPKAGCDLKI---------KGGQE------LKLV-FPQVNVSPE 161 G+I P +D + +SPK + E +K+V F + Sbjct: 109 GSIAKPWFGQLDCLVLSPKPPSSGETVDWAAFDRCVAAGETAAQTVMKIVIFDDADYDWA 168 Query: 162 NYIGFDFER--FSLQP----------MDGPFLEENTNLAISYCFQNPKW---RLSVQTH 205 + + LQP +D L + + + +W RL Q H Sbjct: 169 RDAATRYPQLPLYLQPGNDEVDPSVAVDQQVLADKLLWLVDKTMAD-RWFTPRLLPQLH 226 >gi|312865269|ref|ZP_07725497.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Streptococcus downei F0415] gi|311099380|gb|EFQ57596.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Streptococcus downei F0415] Length = 242 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 67/165 (40%), Gaps = 21/165 (12%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF T QGEG G+ +F R GC+ C +CD+ F K Sbjct: 13 LPILEIFGPTFQGEGRAIGQKTMFIRTGGCDY-----------HCDWCDSAFTWDGSEKA 61 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 DQ+ I E G + Y L+GG P LQ L+ L RG +AVET G Sbjct: 62 TPMTSDQV---IAELDKLGTYD--YVTLSGGNPCLQAANMEELVHKLKSRGVTLAVETQG 116 Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY 163 + + ID + +SPK + L + +++ S Y Sbjct: 117 SRWQDWLLDIDQVTLSPKPPSSKMEVNMETLDFIVGKLDSSKVTY 161 >gi|149919125|ref|ZP_01907609.1| hypothetical protein PPSIR1_35157 [Plesiocystis pacifica SIR-1] gi|149820055|gb|EDM79476.1| hypothetical protein PPSIR1_35157 [Plesiocystis pacifica SIR-1] Length = 261 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 63/139 (45%), Gaps = 19/139 (13%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 ++E F+++QGEG G + F R SGCNL +C +CDT +G Sbjct: 18 LRVQERFVSIQGEGSLVGVRSSFVRVSGCNL-----------RCVWCDTPRTSW-APEGE 65 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 R ++D L D W + R+ VLTGGEPLL L L G + +ET G++ Sbjct: 66 RASLDALVD-----WCGAPGQPRHVVLTGGEPLLFPACAELSARLRAAGHHLTIETAGSL 120 Query: 123 EPPQ-GIDWICVSPKAGCD 140 D + +SPK Sbjct: 121 WCEGVEADLMSISPKLSHS 139 >gi|30019493|ref|NP_831124.1| organic radical activating protein [Bacillus cereus ATCC 14579] gi|29895037|gb|AAP08325.1| Organic radical activating enzyme [Bacillus cereus ATCC 14579] Length = 238 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 16/160 (10%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 + + D+ +E G + + ++GG P L ++ L+ L + G A+ET Sbjct: 49 SAKDQIRQMTPEDIWDELVAIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156 G+ + ID I +SPK Q L + ++ Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMKTDFQRLDAIIQKL 148 >gi|288931807|ref|YP_003435867.1| radical SAM protein [Ferroglobus placidus DSM 10642] gi|288894055|gb|ADC65592.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642] Length = 224 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 93/247 (37%), Gaps = 59/247 (23%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV----- 55 MK I EIF ++QGEG G +F RF GCNL C +CDT + Sbjct: 1 MKA-KISEIFYSIQGEGIFCGVRQLFIRFYGCNL-----------NCYYCDTTYNEDCVN 48 Query: 56 -GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114 + +D + +I+E + TGGEPLL D I +L K + Sbjct: 49 YAYNEVRKNPVELDYVQRIIDE-----SERIHSVSFTGGEPLLYAD--FIASLKKT-KKF 100 Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKGG----QEL--------------------- 149 +E+N T+ P+ + DLK++ E+ Sbjct: 101 YLESNMTL--PEKAKKVRFFDVVAGDLKVREAVENYDEVFERTVKCYKILRDTRKRVTFC 158 Query: 150 KLVFP-----QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQT 204 K+V P + ++ I F LQP+ G F E L + R+ Q Sbjct: 159 KIVLPPKFNFEEVLNSAMEIKDYVRCFVLQPVFGTFGENILKLQ-EAILEFSDARIIPQV 217 Query: 205 HKFIGIR 211 HK++G+R Sbjct: 218 HKYLGVR 224 >gi|212639793|ref|YP_002316313.1| Organic radical activating enzyme [Anoxybacillus flavithermus WK1] gi|212561273|gb|ACJ34328.1| Organic radical activating enzyme [Anoxybacillus flavithermus WK1] Length = 240 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 20/180 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M+ + E+F T+QGEG G+ +F R +GC+ +CR+CD+ F G Sbjct: 1 MEHIPVIEMFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSSFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + D+ ++ G + ++GG P LL+ LI L + I +ET Sbjct: 49 SAKNEVKQMTAEDIWQQLKQLGGDRFNHVTISGGNPALLKGLRALISLLKEHNIRIGLET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN----YIGFDFERFS 172 G++ + ID + +SPK L + ++ + + FD E F+ Sbjct: 109 QGSVWQDWFYDIDDLTISPKPPSSNMKTNFTMLDTIMERLTAHRGHVSLKVVVFDDEDFA 168 >gi|94264593|ref|ZP_01288377.1| Radical SAM [delta proteobacterium MLMS-1] gi|93454947|gb|EAT05184.1| Radical SAM [delta proteobacterium MLMS-1] Length = 224 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 34/184 (18%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF ++QGE AG +F R +GCNL +C +CD + + G Y Sbjct: 9 LSEIFYSIQGESTLAGYPCLFIRLAGCNL-----------RCSYCDARYTYEE--PGQSY 55 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE- 123 +++ + + E G + +TGGEPLLQ V PL+ L RG ++ +ETNGT Sbjct: 56 SLEGVLKAMAEVGP-GGRPVELVEITGGEPLLQEGVYPLLDVLLARGHQVLLETNGTRSL 114 Query: 124 --PPQGI----DWICVSPKAGCD--------LKIKGGQELKLVFPQVNVSPENYIGFDFE 169 P + D C P +G ++ G E+K V N + ++ Sbjct: 115 ARLPAAVRCIMDIKC--PASGMAAHFMPENLHRLTGDDEIKFVI--GNRADYDWAKALLN 170 Query: 170 RFSL 173 L Sbjct: 171 HHQL 174 >gi|119357772|ref|YP_912416.1| radical SAM domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119355121|gb|ABL65992.1| Radical SAM domain protein [Chlorobium phaeobacteroides DSM 266] Length = 223 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 90/234 (38%), Gaps = 47/234 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 +K SI EIF ++QGE AG F R +GC C FCDT + G Sbjct: 3 LKELSISEIFHSIQGESSFAGWPCAFVRLAGC-----------GNGCNFCDTTYAETDGF 51 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119 + ++ D+I + T +TGGEPLLQ V PL+Q L G + +ET Sbjct: 52 ------MLEIPDIIMQ---TQAFRAPIIEITGGEPLLQPAVYPLMQQLCNLGETVLLETG 102 Query: 120 GTIEPPQG-------IDWICVSPKA-------GCDLKIKGGQELKLVFPQVNVSPENYIG 165 G + + ID S L + G++L F + + + Sbjct: 103 GFLSVDKVDSRVHKIIDLKPPSSGVCERNCPENITLALHAGKKLSQTF-EFKIVVASRED 161 Query: 166 FD-FERFSLQ--------PMDGPFLE--ENTNLAISYCFQNPKWRLSVQTHKFI 208 +D + LQ M G E E + LA R+ +Q HK+I Sbjct: 162 YDWAKALLLQHQLYCSCIVMMGVIHEKLEPSTLAEWILRDRLPVRMQLQLHKYI 215 >gi|49481559|ref|YP_035567.1| radical SAM domain-containing protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49333115|gb|AAT63761.1| radical SAM domain protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 238 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 21/179 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 + + D+ E G + + ++GG P+L ++ L+ L + G A+ET Sbjct: 49 SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170 G+ + ID I +SPK Q+L V ++ + + +DFE Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSAMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEY 167 >gi|224475851|ref|YP_002633457.1| putative organic radical activating enzyme [Staphylococcus carnosus subsp. carnosus TM300] gi|222420458|emb|CAL27272.1| putative organic radical activating enzyme [Staphylococcus carnosus subsp. carnosus TM300] Length = 237 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 21/178 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ C +CD+ F G Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------HCSWCDSKFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + + + ++ + G + ++GG P L++ L+ + E A+ET Sbjct: 49 SAKDQIEMMTAEEIYHQLKEVGGDYFNHVTISGGNPALIKGIQELVDLFEDKNIETALET 108 Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-----VNVSPENYIGFDFE 169 G+ P + I+ + +SPK + L V Q +N+ + DFE Sbjct: 109 QGSRYQPWMRQINDLTISPKPPSSGMKPNLEILDDVIAQCVLESLNLKVVIFEDKDFE 166 >gi|223042809|ref|ZP_03612857.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus capitis SK14] gi|222443663|gb|EEE49760.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus capitis SK14] Length = 237 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 16/159 (10%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + E+F T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEVFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + + ++ EE G + ++GG P L++ L+ ++ A+ET Sbjct: 49 SAKEDIRLLTAEEIYEELLEVGGNHFNHVTISGGNPALIKGIQDLVDLFEEKNIYTALET 108 Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155 G+ P I+ + +SPK + L V Q Sbjct: 109 QGSKFQPWMTQINDLTISPKPPSSMMKPNLNTLDSVIDQ 147 >gi|296329700|ref|ZP_06872185.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674097|ref|YP_003865769.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. spizizenii str. W23] gi|296153198|gb|EFG94062.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412341|gb|ADM37460.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. spizizenii str. W23] Length = 243 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 16/154 (10%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ Sbjct: 5 IPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAK 52 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121 ++ E G + ++GG P LL+ I+ L + A+ET GT Sbjct: 53 KDIRWMTAEEIFAELKDIGGDAFSHVTISGGNPALLKQLDAFIELLKENNIRAALETQGT 112 Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153 + + ID + +SPK + Q+L + Sbjct: 113 VYQDWFTLIDDLTISPKPPSSKMVTNFQKLDHIL 146 >gi|124516513|gb|EAY58021.1| putative radical SAM family protein [Leptospirillum rubarum] gi|206603410|gb|EDZ39890.1| Putative radical activating enzyme [Leptospirillum sp. Group II '5-way CG'] Length = 212 Score = 132 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 53/228 (23%), Positives = 78/228 (34%), Gaps = 49/228 (21%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I E F ++QGE ++G F R +GC L +CR+CDT + G Sbjct: 2 KITETFRSIQGESRYSGWPCFFIRTTGCPL-----------RCRWCDTTYSFY---GGEE 47 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 VD L +TGGEP +Q ++P L Q L G + +ET+G Sbjct: 48 RTVDSLV------GEAVSSGTSLVEITGGEPFVQPELPELCQKLLDLGKTVLIETSGGFP 101 Query: 124 PPQGIDWICVSPKAGCDLKIKGG-----------------QELKLVFPQVNVSPENYIGF 166 P G++ C + DLK G E+K V + Sbjct: 102 VPSGLNREC---RLIVDLKPPGSGMEDWMKAENFAELGTEDEIKAVLTGREDFDWSVQKL 158 Query: 167 DFERFS------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + P+ G LA R+ +Q HK + Sbjct: 159 EEWGIWGRVPVTFSPVFGECDPR--ELARWVLDSGLPVRVQIQLHKIL 204 >gi|222150713|ref|YP_002559866.1| hypothetical protein MCCL_0463 [Macrococcus caseolyticus JCSC5402] gi|222119835|dbj|BAH17170.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 236 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 17/161 (10%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 MK + EIF T+QGEG GR +F R +GC+ C +CD+ F G Sbjct: 1 MK-IPVLEIFGPTIQGEGAVIGRKTMFVRTAGCDF-----------SCAWCDSKFTW-DG 47 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 T + + E + + ++GG P L ++ + L +G E+A+ET Sbjct: 48 TMKDEIEMLLPETIYERLQSIAPNQFNHVTISGGNPALIKNLAGFVSLLQDKGIEVALET 107 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 GT ID + +SPK +L V +++ Sbjct: 108 QGTKFQSWMTEIDQLTISPKPPSSTMTHDLDQLDAVLHELD 148 >gi|320108730|ref|YP_004184320.1| Radical SAM domain-containing protein [Terriglobus saanensis SP1PR4] gi|319927251|gb|ADV84326.1| Radical SAM domain protein [Terriglobus saanensis SP1PR4] Length = 229 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 88/236 (37%), Gaps = 54/236 (22%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 E++ ++QGE G +F R +GCNL +C +CD+++ GT + Sbjct: 5 ELYKSVQGESSFTGMPCIFVRSAGCNL-----------RCAWCDSEYTFSGGTP---FTE 50 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNK--RGFEIAVETNGTIE 123 D++ IE R TGGEP+L +PL++ L RG+ + +ET+G Sbjct: 51 DEIVAQIE-----ALAPCRLIEFTGGEPMLHAKELLPLMRRLLADPRGYTLMMETSGERP 105 Query: 124 -------PPQGIDWICV-------SPKAGCDLKIKGGQELKLVFPQ-------VNVSPEN 162 + +D C S + + E+K V + E+ Sbjct: 106 LQDVPTAVHKIVDVKCPGAGSAFGSFRMSNLDILTQRDEVKFVLRDRVDYEFARDFIREH 165 Query: 163 YIGFDFERFSLQPMDGPF-----LEENTNL----AISYCFQN-PKWRLSVQTHKFI 208 + L P +N L + + + RLS+Q HKFI Sbjct: 166 SLNEKAGGILLSPAFIKVPSILRSADNMELDARHLVDWMLADGLDARLSLQVHKFI 221 >gi|162450849|ref|YP_001613216.1| radical activating enzyme [Sorangium cellulosum 'So ce 56'] gi|161161431|emb|CAN92736.1| radical activating enzyme [Sorangium cellulosum 'So ce 56'] Length = 217 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 58/238 (24%), Positives = 82/238 (34%), Gaps = 59/238 (24%) Query: 1 MK--LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58 MK + EI+ ++QGE AG F R +GCNL +C +CDT Sbjct: 1 MKEDTLVVHEIYASVQGESTFAGLPCTFVRLTGCNL-----------RCAWCDTSQAFYG 49 Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVE 117 G + R +++E G LTGGEPLLQ PL+ L G + VE Sbjct: 50 GKRIRR------GEVLERALALG---TPLVELTGGEPLLQPGSFPLLAELCDAGRTVLVE 100 Query: 118 TNGTIEPPQGIDWICVSPKAG--CDLKIKGG-----------------QELKLVFPQ--- 155 T+G D V P+ DLK G E+K V Sbjct: 101 TSG------EADVSRVDPRVHKIMDLKAPGSGESHRNRWSNLDHLTPRDEIKFVLADRAD 154 Query: 156 ----VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN-PKWRLSVQTHKFI 208 + E + + G + + + + R+ VQ HK I Sbjct: 155 YAWMRDTIRERRLDARGVTLLASCVWGKLSP---KELVQWVLDDGLRVRVQVQLHKVI 209 >gi|55820876|ref|YP_139318.1| putative coenzyme PQQ synthesis protein [Streptococcus thermophilus LMG 18311] gi|55822792|ref|YP_141233.1| putative coenzyme PQQ synthesis protein [Streptococcus thermophilus CNRZ1066] gi|116627685|ref|YP_820304.1| putative coenzyme PQQ synthesis protein [Streptococcus thermophilus LMD-9] gi|55736861|gb|AAV60503.1| hypothetical protein, coenzyme PQQ synthesis homologue [Streptococcus thermophilus LMG 18311] gi|55738777|gb|AAV62418.1| hypothetical protein, coenzyme PQQ synthesis homologue [Streptococcus thermophilus CNRZ1066] gi|116100962|gb|ABJ66108.1| Pyruvate-formate lyase-activating enzyme [Streptococcus thermophilus LMD-9] Length = 238 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 21/159 (13%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T QGEG G+ +F R +GC+ C +CD+ F K Sbjct: 9 LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120 R D++ + ++ Y L+GG P L L+ L R +AVET G Sbjct: 58 TRMTADEVIEALDALGTYD-----YVTLSGGNPALLAANMAELVSKLKARDVTLAVETQG 112 Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 + E + ID + +SPK + L + Q++ Sbjct: 113 SRWQEWLREIDQVTLSPKPPSSKMEVNMETLDFIVSQLD 151 >gi|304408385|ref|ZP_07390032.1| Radical SAM domain protein [Paenibacillus curdlanolyticus YK9] gi|304342674|gb|EFM08521.1| Radical SAM domain protein [Paenibacillus curdlanolyticus YK9] Length = 240 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 86/234 (36%), Gaps = 46/234 (19%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + EIF T++GEG AG VF R GCNL +C +CDT + Sbjct: 18 SKLPMVEIFETVEGEGTRAGFPTVFVRLFGCNL-----------RCVWCDTTYSYPPAKS 66 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRG--FEIAVE 117 ++ ++ + ++ R+ TGGEPLL D L++AL + ++ VE Sbjct: 67 EYSLSIREIVEKVKS------YRSRHICFTGGEPLLYGDRSAMLLKALAEIDGIVDVHVE 120 Query: 118 TNGTIEPPQGIDWICVS-PKAGCDLKIKGG-----------------QELKLVFPQVNVS 159 TNG I ++ + + + D K+ E+K V Sbjct: 121 TNGAIGLAPFLESVPLPNVRYVMDYKLPDSGENDKMEMANFELLRPQDEIKFVIASDQDF 180 Query: 160 PENYIGFDFERFSLQ--PMDGPFLEENTNL-AISYCFQ--NPKWRLSVQTHKFI 208 R+ Q PM P E + + +L++Q HK I Sbjct: 181 DAAVETL--RRYPTQALPMFSPVWESMPPAKLVDRMLEAGLSGVKLNMQLHKII 232 >gi|206977517|ref|ZP_03238411.1| radical SAM domain protein [Bacillus cereus H3081.97] gi|217958918|ref|YP_002337466.1| radical SAM domain protein [Bacillus cereus AH187] gi|222095075|ref|YP_002529135.1| radical sam domain protein [Bacillus cereus Q1] gi|206744235|gb|EDZ55648.1| radical SAM domain protein [Bacillus cereus H3081.97] gi|217067272|gb|ACJ81522.1| radical SAM domain protein [Bacillus cereus AH187] gi|221239133|gb|ACM11843.1| radical SAM domain protein [Bacillus cereus Q1] Length = 238 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 90/240 (37%), Gaps = 47/240 (19%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 + + D+ E G + + ++GG P+L ++ L+ L + G A+ET Sbjct: 49 SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER- 170 G+ + ID I +SPK Q+L V ++ + + +DFE Sbjct: 109 QGSKWQDWLLEIDEITISPKPPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEYA 168 Query: 171 -----------FSLQPM--DGPFLEENT---NLAISY---------CFQNPKWRLSVQTH 205 F LQ D +++ L Y C + ++ Q H Sbjct: 169 VKMHERYPEVPFFLQVGNDDTKTVDDAMLIKKLLDKYEWLIEKAVNCKEMNNAKVLPQLH 228 >gi|308173345|ref|YP_003920050.1| QueE [Bacillus amyloliquefaciens DSM 7] gi|307606209|emb|CBI42580.1| QueE [Bacillus amyloliquefaciens DSM 7] gi|328553728|gb|AEB24220.1| QueE [Bacillus amyloliquefaciens TA208] gi|328911423|gb|AEB63019.1| queuosine biosynthesis protein QueE [Bacillus amyloliquefaciens LL3] Length = 243 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 16/160 (10%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ Sbjct: 5 IPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAK 52 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121 D+ E G + ++GG P LL+ LI L G A+ET GT Sbjct: 53 KDIRWMTAEDIYRELREIGGDAFSHVTISGGNPALLKQLDALILLLKDHGVRAALETQGT 112 Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159 + + I+ + +SPK +L + ++ + Sbjct: 113 VYQDWFTMINDLTISPKPPSSGMTTDFAKLDHIVSSLDAA 152 >gi|293365938|ref|ZP_06612641.1| ExsD protein [Streptococcus oralis ATCC 35037] gi|307702341|ref|ZP_07639299.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus oralis ATCC 35037] gi|322375722|ref|ZP_08050234.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Streptococcus sp. C300] gi|291315616|gb|EFE56066.1| ExsD protein [Streptococcus oralis ATCC 35037] gi|307624144|gb|EFO03123.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus oralis ATCC 35037] gi|321279430|gb|EFX56471.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Streptococcus sp. C300] Length = 238 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 21/159 (13%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T QGEG G+ +F R +GC+ C +CD+ F K Sbjct: 9 LPVLEIFGPTFQGEGRAIGQKTMFVRTTGCDY-----------HCDWCDSAFTWDGSEKP 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120 R D++ +++ Y L+GG P L L+ L +RG +AVET G Sbjct: 58 TRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQG 112 Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 + + ID + +SPK + L + Q++ Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLD 151 >gi|324325459|gb|ADY20719.1| radical SAM domain-containing protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 238 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 21/179 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 + + D+ E G + + ++GG P L ++ L+ L + G A+ET Sbjct: 49 SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFER 170 G+ + ID I +SPK Q+L KL +++ + +DFE Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMKTDFQKLDAMIQKLSGKDISLKVVVFDDYDFEY 167 >gi|229541150|ref|ZP_04430210.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus coagulans 36D1] gi|229325570|gb|EEN91245.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus coagulans 36D1] Length = 241 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 16/162 (9%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 3 SKIPVIEIFGPTIQGEGMVIGKKTMFVRTAGCDY-----------ACSWCDSAFTW-NGE 50 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119 + GR + ++ ++ TG + + ++GG PLL + L+ L AVET Sbjct: 51 EKGRIALMTAEEIFQKLKETGGENFSHVTISGGNPLLLKGLGELVDLLKTHQIRTAVETQ 110 Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159 G+ +D + +SPK + L + Q+ ++ Sbjct: 111 GSRWQNWLPDVDDVTISPKPPSSGMHTDFETLDRMIEQLTLA 152 >gi|124008813|ref|ZP_01693501.1| coenzyme PQQ synthesis protein, conjectural [Microscilla marina ATCC 23134] gi|123985604|gb|EAY25489.1| coenzyme PQQ synthesis protein, conjectural [Microscilla marina ATCC 23134] Length = 250 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 65/216 (30%), Positives = 84/216 (38%), Gaps = 43/216 (19%) Query: 1 MKLYSIK---EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG- 56 MK+ EIF T+QGEG G+ VF R S CNL C +CDTD+ Sbjct: 1 MKIAKFNGKGEIFYTIQGEGKSLGKPTVFIRSSLCNL-----------HCIWCDTDYTWN 49 Query: 57 ----------IQGTKGGRYN-VDQLADLIEEQWI--TGEKEGRYCVLTGGEPLLQVD--V 101 Q +Y+ +Q+ +L Q I + VLTGGEPLLQ V Sbjct: 50 WKNTPYPHVFDQTPGYEKYDKKEQIVELSTAQIIEEIAPYACKNLVLTGGEPLLQQKAWV 109 Query: 102 PLIQAL--NKRGFEIAVETNGTIEPPQG----IDWICVSPKAGCDLKIKGGQELKLVFPQ 155 L+ L G+ VETNGT+ P ID VSPK +E + Sbjct: 110 ELMAQLRKKDAGYWFEVETNGTLLPSSEFDALIDQYNVSPKLENSNNSMKIREKPEAYAF 169 Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191 SP+ + F + LEE L Y Sbjct: 170 FRQSPKAWFKFVIAQ-------QADLEEVLELIKKY 198 >gi|312278215|gb|ADQ62872.1| Pyruvate-formate lyase-activating enzyme [Streptococcus thermophilus ND03] Length = 238 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 21/159 (13%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T QGEG G+ +F R +GC+ C +CD+ F K Sbjct: 9 LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120 R D++ + ++ Y L+GG P L L+ L R +AVET G Sbjct: 58 TRMTADEVIEALDALGTYD-----YVTLSGGNPALLAANMAELVSKLKARDVTLAVETQG 112 Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 + E + ID + +SPK + L + Q++ Sbjct: 113 SRWQEWLREIDQVTLSPKPPSSKMEVNMETLDFIVSQLD 151 >gi|158520514|ref|YP_001528384.1| radical SAM domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158509340|gb|ABW66307.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3] Length = 212 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 84/235 (35%), Gaps = 57/235 (24%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M L+ + E+F ++QGE AG F R +GCNL C +CDT + GT Sbjct: 1 MSLH-VSELFFSIQGESLDAGLACAFVRLAGCNLC-----------CAYCDTAYARQGGT 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETN 119 + ++ D + +TGGEPLLQ + PL IQ L G+ + +ETN Sbjct: 49 P---MEIPEILDRVARFG------CSLVEITGGEPLLQKETPLLIQRLLSVGYRVLLETN 99 Query: 120 GTIEP-------PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 GT + +D C S + L QV + + F + Sbjct: 100 GTQNIGLVDKSCIRIVDVKCPSSGESEKNDARNLDRLA-AHDQVKFVISDRTDYLFAK-- 156 Query: 173 LQPMDGPFLEENTNLAISYCF-----------QNPKW--------RLSVQTHKFI 208 T +A + Q W RL +Q HK + Sbjct: 157 ------KTAGRITAVAPGHILFSTVHGVLDPAQLAHWMLADGLPVRLHLQLHKIL 205 >gi|126651679|ref|ZP_01723882.1| radical SAM domain protein [Bacillus sp. B14905] gi|126591628|gb|EAZ85734.1| radical SAM domain protein [Bacillus sp. B14905] Length = 242 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 52/199 (26%), Positives = 76/199 (38%), Gaps = 37/199 (18%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKVPVIEIFGPTIQGEGMVVGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 + ++ E G + ++GG P L ++ LI L + +I VET Sbjct: 49 SGKHLIVQMTAGEIWSELKRLGGHGFSFVTISGGNPALYPNLEALIAILKENDIKIGVET 108 Query: 119 NGTIE--PPQGIDWICVSPKAGCD-------------LKIKGGQ-----ELKL-VFPQVN 157 G+ ID + +SPK K+KG LK+ VF Q + Sbjct: 109 QGSRWQNWMYDIDELTISPKPPSSGMTIDHSVLADIFEKLKGRNRNHNISLKIVVFNQED 168 Query: 158 VSPENYIGFDFER--FSLQ 174 I F R F LQ Sbjct: 169 YDFAKQIHHRFPRIPFYLQ 187 >gi|154685784|ref|YP_001420945.1| YkvL [Bacillus amyloliquefaciens FZB42] gi|154351635|gb|ABS73714.1| YkvL [Bacillus amyloliquefaciens FZB42] Length = 243 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 16/160 (10%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ Sbjct: 5 IPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAK 52 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121 D+ E G + ++GG P LL+ LI L + G A+ET GT Sbjct: 53 KDIRWMTAEDIYRELREIGGDAFSHVTISGGNPALLKQLDALILLLKEHGVRAALETQGT 112 Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159 + + I+ + +SPK +L + ++ + Sbjct: 113 VYQDWFTMINDLTISPKPPSSGMTTDFAKLDHIVSSLDAA 152 >gi|172058910|ref|YP_001815370.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Exiguobacterium sibiricum 255-15] gi|171991431|gb|ACB62353.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Exiguobacterium sibiricum 255-15] Length = 238 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 73/186 (39%), Gaps = 32/186 (17%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T QGEG G+ +F R GC+ C +CD+ F K Sbjct: 10 IPVLEIFGPTFQGEGRSIGQKTMFVRTGGCDY-----------SCAWCDSAFTWDGSEKP 58 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 D++ ++ G + ++GG PLL + L+ AL RG ++VET G+ Sbjct: 59 DLLTADEILAQLDALGSYG-----HVTISGGNPLLHASIGTLVDALKSRGITMSVETQGS 113 Query: 122 IE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDF---- 168 I+ + +SPK L + F + V + + DF Sbjct: 114 YWQNWVLDIEDVTISPKPPSSGMTVDYDRLDVFFKRLPEQQRAVKIVIFDEADLDFAAAI 173 Query: 169 -ERFSL 173 +R++L Sbjct: 174 SDRYAL 179 >gi|289167418|ref|YP_003445687.1| hypothetical protein smi_0570 [Streptococcus mitis B6] gi|288906985|emb|CBJ21819.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 238 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 21/159 (13%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T QGEG G+ +F R +GC+ C +CD+ F K Sbjct: 9 LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120 R D++ +++ Y L+GG P L L+ L +RG +AVET G Sbjct: 58 IRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQG 112 Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 + + ID + +SPK + L + Q++ Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLD 151 >gi|331265893|ref|YP_004325523.1| hypothetical protein SOR_0520 [Streptococcus oralis Uo5] gi|326682565|emb|CBZ00182.1| conserved hypothetical protein [Streptococcus oralis Uo5] Length = 238 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 21/159 (13%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T QGEG G+ +F R +GC+ C +CD+ F K Sbjct: 9 LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120 R D++ +++ Y L+GG P L L+ L +RG +AVET G Sbjct: 58 TRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAQLVTKLKERGVTLAVETQG 112 Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 + + ID + +SPK + L + Q++ Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLD 151 >gi|314933021|ref|ZP_07840387.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus caprae C87] gi|313654340|gb|EFS18096.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus caprae C87] Length = 237 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 82/207 (39%), Gaps = 34/207 (16%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + E+F T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEVFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + + ++ EE G + ++GG P L++ L+ ++ A+ET Sbjct: 49 SAKEDIRLLTAEEIYEELLEVGGNHFNHVTISGGNPALIKGIQDLVDLFEEKNIYTALET 108 Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169 G+ P I+ + +SPK + L V Q + V N ++F Sbjct: 109 QGSKFQPWMTQINDLTISPKPPSSMMKPNLDILDSVIEQCIDDTLNLKVVIFNEEDYEFA 168 Query: 170 R----------FSLQPMDGPFLEENTN 186 + F LQ + P+LE+ Sbjct: 169 KMIHHRYPSIPFYLQ-VGNPYLEDEVE 194 >gi|254469727|ref|ZP_05083132.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Pseudovibrio sp. JE062] gi|211961562|gb|EEA96757.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Pseudovibrio sp. JE062] Length = 246 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 85/242 (35%), Gaps = 49/242 (20%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M SI EIF T+QGEG G VF R GC+ +C +CDT + Sbjct: 7 MSKLSISEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDTLHA-VDS 54 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 ++ D+ ++ + L+GG P +Q LI +G++ A+ET Sbjct: 55 AYRHTWDQMDSEDVWKKVEELSCGQPITVSLSGGNPAIQDFSKLIALGKAKGYKFAIETQ 114 Query: 120 GTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV-------------NVSPENYI 164 G++ + +D + +SPK ++ + + ++ Sbjct: 115 GSVARDWFADLDTLVLSPKPPSSGEVVNWDKFDACLDAALNTATCVIKVVVFDDVDYDWA 174 Query: 165 GFDFERF-----SLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQ 203 ER+ LQP + P +++ + + W R+ Q Sbjct: 175 KEVSERYPYLPMYLQPGNHTPPPPEDDDAQIDMDGIMDRMHWLVDKTVSDQWFKPRILPQ 234 Query: 204 TH 205 H Sbjct: 235 LH 236 >gi|153008343|ref|YP_001369558.1| radical SAM domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151560231|gb|ABS13729.1| Radical SAM domain protein [Ochrobactrum anthropi ATCC 49188] Length = 246 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 78/219 (35%), Gaps = 36/219 (16%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF TLQGEG G VF R GC+ +C +CD+ ++ Sbjct: 10 IRIAEIFGPTLQGEGVLIGEPTVFVRTGGCDY-----------RCVWCDSLHA-VESRFR 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + E + L+GG P +Q PLI+ G+ A+ET G++ Sbjct: 58 REWKAMSVEAVWGEVTTLSRNKPLTVSLSGGNPAIQPLGPLIEHGKTEGYRFALETQGSV 117 Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF----DFER------ 170 + +D + +SPK L + +P + F D + Sbjct: 118 AQDWFSALDTLVLSPKPPSSGMDADFDALAVCVEAAGRTPRTVLKFVIFDDADYVFAKDV 177 Query: 171 --------FSLQPMD-GPFLEENTNLAISY--CFQNPKW 198 LQP + P E + AI + +W Sbjct: 178 ASQYSGLPVYLQPGNHTPPPPEAHDAAIDIDGIMRRMEW 216 >gi|218233066|ref|YP_002366125.1| radical SAM domain protein [Bacillus cereus B4264] gi|218161023|gb|ACK61015.1| radical SAM domain protein [Bacillus cereus B4264] Length = 238 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 16/160 (10%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMIVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118 + + D+ +E G + + ++GG P L ++ L+ L + G A+ET Sbjct: 49 SAKDQIRQMTPEDIWDELVAIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156 G+ + ID I +SPK Q L + ++ Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMKTDFQRLDAIIQKL 148 >gi|83942510|ref|ZP_00954971.1| radical SAM domain protein [Sulfitobacter sp. EE-36] gi|83846603|gb|EAP84479.1| radical SAM domain protein [Sulfitobacter sp. EE-36] Length = 236 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 87/241 (36%), Gaps = 51/241 (21%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M I E+F T+QGEG G VF R GC+ +C +CD+ Sbjct: 1 MSQLRIAEVFGPTIQGEGALIGEPTVFVRTGGCDY-----------RCAWCDSMHAVDPA 49 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + N+ + +E + L+GG P +Q PLIQ + G+ A ET Sbjct: 50 FRHDWANMST-DAVWQEVQRLSDNTPLTVSLSGGNPAIQDFAPLIQLGHAAGYRFACETQ 108 Query: 120 GTIEPP--QGIDWICVSPKAGCDLKI---------KGGQE------LKLVFPQVNVSPEN 162 G+I P +D + +SPK + E +K+V + + + Sbjct: 109 GSIAKPWFGQLDCLVLSPKPPSSGETVDWAAFDRCVAAGETAAQTVMKIVI--FDDADYD 166 Query: 163 YIGFDFERF-----SLQP----MDGPFLEENTNLA------ISYCFQNPKW---RLSVQT 204 + R+ LQP +D + LA + + +W RL Q Sbjct: 167 WARVAATRYPQLPLYLQPGNDEVDPSVAVDPQVLAGKLLWLVDKTMAD-RWFTPRLLPQL 225 Query: 205 H 205 H Sbjct: 226 H 226 >gi|322392672|ref|ZP_08066132.1| ExsD protein [Streptococcus peroris ATCC 700780] gi|321144664|gb|EFX40065.1| ExsD protein [Streptococcus peroris ATCC 700780] Length = 238 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 21/159 (13%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T QGEG G+ +F R +GC+ C +CD+ F K Sbjct: 9 LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120 R D++ +++ Y L+GG P L L+ L +RG +AVET G Sbjct: 58 TRMTADEVIAALDKLGTYD-----YVTLSGGNPALLAANMAELVTKLKERGVTLAVETQG 112 Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 + + ID + +SPK + L + ++ Sbjct: 113 SRWQTWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSHLD 151 >gi|270293087|ref|ZP_06199298.1| ExsD protein [Streptococcus sp. M143] gi|270279066|gb|EFA24912.1| ExsD protein [Streptococcus sp. M143] Length = 238 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 21/159 (13%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T QGEG G+ +F R +GC+ C +CD+ F K Sbjct: 9 LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120 R D++ +++ Y L+GG P L L+ L +RG +AVET G Sbjct: 58 TRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAQLVTKLKERGVTLAVETQG 112 Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 + + ID + +SPK + L + Q++ Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEINFETLDFIVSQLD 151 >gi|242372943|ref|ZP_04818517.1| organic radical-activating protein [Staphylococcus epidermidis M23864:W1] gi|242349427|gb|EES41028.1| organic radical-activating protein [Staphylococcus epidermidis M23864:W1] Length = 237 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 82/207 (39%), Gaps = 34/207 (16%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + E+F T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEVFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + + ++ EE G + ++GG P L++ L+ ++ A+ET Sbjct: 49 SAKEDIRLLSAEEIYEELREVGGDNFNHVTISGGNPALIKGIQDLVDLFEEKNIYTALET 108 Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169 G+ P I+ + +SPK L V Q + V N ++F Sbjct: 109 QGSKFQPWMTQINDLTISPKPPSSTMKPNLDILDSVIEQCVHHTLNLKVVIFNEEDYEFA 168 Query: 170 R----------FSLQPMDGPFLEENTN 186 + F LQ + P+LE++ Sbjct: 169 KMIHHRYPSIPFYLQ-VGNPYLEDDVE 194 >gi|87311106|ref|ZP_01093230.1| hypothetical protein DSM3645_18841 [Blastopirellula marina DSM 3645] gi|87286197|gb|EAQ78107.1| hypothetical protein DSM3645_18841 [Blastopirellula marina DSM 3645] Length = 228 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 21/195 (10%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EI+ ++QGEG G + F R SGCNL +C FCDT + +G Sbjct: 2 RIAEIYRSIQGEGALTGVTSTFVRASGCNL-----------RCWFCDTPHASWK-PEGED 49 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 +V ++ I + + VLTGGEP+L + +PL + ++ G I +ET GT+ Sbjct: 50 LSVAEILGRI------ALLDCDHVVLTGGEPMLFAEMIPLCEGIHVAGRHITIETAGTLY 103 Query: 124 PPQGIDWICVSPKAGCD-LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182 P D + +SPK + + Q +PE E Q Sbjct: 104 LPLTCDVMSISPKMSNSAPPLDDHPRWRRRHEQTRKAPEVIRQLIDEHAY-QFKFVIDRP 162 Query: 183 ENTNLAISYCFQNPK 197 + + Y P+ Sbjct: 163 ADAEEVLRYLDLYPQ 177 >gi|301052981|ref|YP_003791192.1| radical SAM domain-containing protein [Bacillus anthracis CI] gi|300375150|gb|ADK04054.1| radical SAM domain protein [Bacillus cereus biovar anthracis str. CI] Length = 238 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 21/179 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + + D+ E G + + ++GG P LL+ L+ L + G A+ET Sbjct: 49 SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPVLLKNIGFLLSILKENGMRTAIET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170 G+ + ID I +SPK Q+L V ++ + + +DFE Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEY 167 >gi|291483909|dbj|BAI84984.1| hypothetical protein BSNT_02308 [Bacillus subtilis subsp. natto BEST195] Length = 243 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 16/165 (9%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ Sbjct: 5 IPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAK 52 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121 ++ E G + ++GG P LL+ I+ L + A+ET GT Sbjct: 53 KDIRWMTAEEIFAELKDIGGDAFSHVTISGGNPALLKQLDVFIELLKENNIRAALETQGT 112 Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYI 164 + + ID + +SPK + Q+L + + + + Sbjct: 113 VYQDWFTLIDDLTISPKPPSSKMVTNFQKLDHILTSLQENDRQHA 157 >gi|315613640|ref|ZP_07888547.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus sanguinis ATCC 49296] gi|315314331|gb|EFU62376.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus sanguinis ATCC 49296] Length = 238 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 21/159 (13%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T QGEG G+ +F R +GC+ C +CD+ F K Sbjct: 9 LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120 R D++ +++ Y L+GG P L L+ L +RG +AVET G Sbjct: 58 TRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAQLVTKLKERGVTLAVETQG 112 Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 + + ID + +SPK + L + Q++ Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLD 151 >gi|126459256|ref|YP_001055534.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|126248977|gb|ABO08068.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548] Length = 216 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 39/204 (19%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF +LQGEG + G+ AVF R +GC +C +CDT++ G Sbjct: 2 RVLEIFASLQGEGVNLGKPAVFVRLAGCP-----------IRCVYCDTEYSW-DFNGGVE 49 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQALNKRGFEIAVETNGT 121 + + EE + G + V+TGGEPL+ + L+ L + G + VET+G Sbjct: 50 MSPGEAVRRAEELGVRG-----HVVVTGGEPLVWMRRGLEELVCGLRRLG-AVEVETSGV 103 Query: 122 IEPPQGI----DWICVSP-------KAGCDLKIKGGQELKLVFPQVNVSPENYI------ 164 P + D+ VSP KA ++ F +V+ Sbjct: 104 YAPTPELDACADFYDVSPKLSNAGVKAPLSPFYPKSPKVWFKFVVADVADVEEALAYVRE 163 Query: 165 -GFDFERFSLQPMDGPFLEENTNL 187 G +R L PM E L Sbjct: 164 RGIPLDRVMLMPMSKTPEEHAEVL 187 >gi|73663319|ref|YP_302100.1| putative radical activating enzyme [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495834|dbj|BAE19155.1| putative radical activating enzyme [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 238 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 37/211 (17%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSSFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + + ++ ++ + + ++GG P L++ L+ + +G + A+ET Sbjct: 49 SAKEDIRMMSAEEIYDQLYHIAGDSFNHVTISGGNPALIKGIQQLVDLFDDKGIQSALET 108 Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169 G+ P ID + +SPK L V Q + V + + F Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSKMKPNLPILDEVIEQCVPESLNLKVVIFDDEDYQFA 168 Query: 170 R----------FSLQ----PMDGPFLEENTN 186 + F LQ +DG +E +T Sbjct: 169 KMIHHRYPTVPFYLQVGNPYLDGEHVEAHTE 199 >gi|256059945|ref|ZP_05450130.1| Radical SAM domain protein [Brucella neotomae 5K33] gi|261323917|ref|ZP_05963114.1| radical SAM domain-containing protein [Brucella neotomae 5K33] gi|261299897|gb|EEY03394.1| radical SAM domain-containing protein [Brucella neotomae 5K33] Length = 251 Score = 130 bits (329), Expect = 8e-29, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 15 IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 63 HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSV 122 Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 + +D + +SPK L P + F Sbjct: 123 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPHTVLKF 168 >gi|23100258|ref|NP_693725.1| coenzyme PQQ synthesis [Oceanobacillus iheyensis HTE831] gi|22778490|dbj|BAC14759.1| coenzyme PQQ synthesis [Oceanobacillus iheyensis HTE831] Length = 240 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 55/248 (22%), Positives = 98/248 (39%), Gaps = 55/248 (22%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 MK + EIF T+QGEG GR +F R +GC+ C +CD+ F G Sbjct: 1 MK-IPVLEIFGPTIQGEGMVIGRKTMFVRTAGCDY-----------SCSWCDSKFTW-DG 47 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 ++ + + ++ + G + ++GG P LL+ L+ L++ E+A+ET Sbjct: 48 SEKDSIQLLEPEEVFDSLKDIGGNTFGHVTISGGNPALLKQIDGLVDLLHQHQIEVALET 107 Query: 119 NGTI--EPPQGIDWICVSPKAGC----------DLKIKGGQE-------LKLV-FPQVNV 158 G+ + +D + +SPK D I+ + LK+V F Q ++ Sbjct: 108 QGSRWQDWFTKVDDLTLSPKPPSSGMKTNFTTLDNIIERLDKEQDGHFSLKVVIFDQEDL 167 Query: 159 --SPENYIGFDFERFSLQPMDGPFLEENTNL-------------AISYCFQN---PKWRL 200 + + ++ + F LQ G E + I +N R+ Sbjct: 168 TYAEQIHVRYPFVTLFLQV--GNDNIEASEDDRLLSDLLDKYEKLIDLVMENKVLKDVRV 225 Query: 201 SVQTHKFI 208 Q H ++ Sbjct: 226 LPQLHTYL 233 >gi|319652978|ref|ZP_08007083.1| radical SAM domain-containing protein [Bacillus sp. 2_A_57_CT2] gi|317395327|gb|EFV76060.1| radical SAM domain-containing protein [Bacillus sp. 2_A_57_CT2] Length = 243 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 16/167 (9%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSSFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + + ++ +E G + ++GG P LL+ LI L +I +ET Sbjct: 49 SAKDSIRQMEPDEIWKELKELGGDGFSFVTISGGNPALLKNLSELISLLKAEKIKICLET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY 163 G+ + ID + +SPK L + + + Sbjct: 109 QGSRWQDWFYEIDELTLSPKPPSSGMKTDFDVLGYIVNNLQTKRKAE 155 >gi|294851212|ref|ZP_06791885.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Brucella sp. NVSL 07-0026] gi|294819801|gb|EFG36800.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Brucella sp. NVSL 07-0026] Length = 280 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 44 IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 91 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 92 HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSV 151 Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 + +D + +SPK L P + F Sbjct: 152 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 197 >gi|297621468|ref|YP_003709605.1| Radical activating enzyme [Waddlia chondrophila WSU 86-1044] gi|297376769|gb|ADI38599.1| Radical activating enzyme [Waddlia chondrophila WSU 86-1044] Length = 228 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 85/229 (37%), Gaps = 47/229 (20%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + + EIFL++QGE G F R + CNL +C +CDT + +G Sbjct: 15 QTLRLIEIFLSIQGETSLTGLPTTFIRLASCNL-----------RCTWCDTPYSFGKGES 63 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 ++ + + + + +TGGEPLLQ V L++ L + +++ET G Sbjct: 64 S---SLQSIIETVRS------NGASHVCITGGEPLLQSQVYLLMETLCNLDYIVSLETGG 114 Query: 121 TIE-------PPQGIDWICVSPKAGCDLK--------IKGGQELKLVFPQ-------VNV 158 ++ +D C P +G K ++ E+K V V + Sbjct: 115 SLSTEKVDPRVITILDIKC--PGSGMSQKNTWENLERLREQDEVKFVIMNREDYEWSVKI 172 Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207 + + P+ + L R+++Q HK+ Sbjct: 173 CKNRDLFSRSKPPLFSPVHNVLNPQ--ELIQWTLQDTLPVRINLQVHKW 219 >gi|299541811|ref|ZP_07052134.1| coenzyme PQQ synthesis-like protein [Lysinibacillus fusiformis ZC1] gi|298725549|gb|EFI66190.1| coenzyme PQQ synthesis-like protein [Lysinibacillus fusiformis ZC1] Length = 242 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 16/167 (9%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKVPVIEIFGPTIQGEGMVVGQKTMFVRTAGCDY-----------SCSWCDSSFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118 + ++ E G + ++GG P L ++ LI L + +I VET Sbjct: 49 SGKHLIVQMTAEEIWSELKRLGGNGFSFVTISGGNPALNPNLAELIAILKENDIKIGVET 108 Query: 119 NGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY 163 G+ ID + +SPK L +F ++ N+ Sbjct: 109 QGSRWQKWMYEIDELTISPKPPSSGMTTDYSVLSYIFEKLKDRNSNH 155 >gi|110596862|ref|ZP_01385152.1| Radical SAM [Chlorobium ferrooxidans DSM 13031] gi|110341549|gb|EAT60009.1| Radical SAM [Chlorobium ferrooxidans DSM 13031] Length = 224 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 89/236 (37%), Gaps = 52/236 (22%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 +I EIF ++QGE +AG F R +GC CR CDT + Sbjct: 4 PTLNISEIFHSIQGESSYAGWPCTFIRLAGC-----------GHGCRHCDTAYAEH---P 49 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFE-IAVETN 119 G N++++ + + E +TGGEPLLQ +V PL++ L R E + +ET Sbjct: 50 GREMNIEEIIERVVELG------APLVEITGGEPLLQEEVYPLMEKLCNRWKERVLLETG 103 Query: 120 GTIEPPQG-------IDWIC----VSPK---AGCDLKIKGGQ------ELKLVFPQVNVS 159 G + + ID VS K L +K ELK+V + Sbjct: 104 GFLSVAKADPRVHKIIDLKPPSTGVSDKNNPENIALALKQKDHANRLIELKIVV--ADRE 161 Query: 160 PENYIGFDFERFSLQPMDGPFLE-------ENTNLAISYCFQNPKWRLSVQTHKFI 208 + R L P + E NLA R+ +Q HK+I Sbjct: 162 DYLWARELLTRTGL-PDACTVMMGVAFGMLEPVNLANWILEDRLNVRMQLQLHKYI 216 >gi|239636677|ref|ZP_04677679.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus warneri L37603] gi|239598032|gb|EEQ80527.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus warneri L37603] Length = 237 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 33/195 (16%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + E+F T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEVFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + + ++ + G + ++GG P L++ L+ + + A+ET Sbjct: 49 SAKEDIQLMSAEEIYNKLREIGGDNFNHVTISGGNPALIKGIQDLVDLFEEHHIQTALET 108 Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169 G+ P ID + +SPK L V Q + V + F+F Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSNMKPNLDILDSVIEQCVPESLNLKVVIFDEDDFEFA 168 Query: 170 R----------FSLQ 174 + F LQ Sbjct: 169 KMIHHRYPTIPFYLQ 183 >gi|330684947|gb|EGG96626.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus epidermidis VCU121] Length = 237 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 80/204 (39%), Gaps = 34/204 (16%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + E+F T+QGEG GR +F R +GC+ +C +CD+ F G Sbjct: 1 MAKIPVLEVFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + + ++ + G + ++GG P L++ L+ + + A+ET Sbjct: 49 SAKEDIQLMSAEEIYNKLREVGGDNFNHVTISGGNPALIKGIQDLVDLFEEHHIQTALET 108 Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169 G+ P ID + +SPK L V Q + V + F+F Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSNMKPNLDILDSVIEQCVPESLNLKVVIFDEDDFEFA 168 Query: 170 R----------FSLQPMDGPFLEE 183 + F LQ + P+L+E Sbjct: 169 KMIHHRYPSIPFYLQ-VGNPYLDE 191 >gi|163939249|ref|YP_001644133.1| radical SAM domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|163861446|gb|ABY42505.1| Radical SAM domain protein [Bacillus weihenstephanensis KBAB4] Length = 238 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 16/160 (10%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118 + + D+ E G + + ++GG P LL+ L+ L + G AVET Sbjct: 49 SAKDQIKQMTPEDIWNELVEIGGENFSHVTISGGNPVLLKNMQFLLSILKENGMRTAVET 108 Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156 G+ + ID + +SPK L V ++ Sbjct: 109 QGSKWQDWLLQIDEVTISPKPPSSTMKTDFHMLDSVIHKL 148 >gi|52079923|ref|YP_078714.1| QueE [Bacillus licheniformis ATCC 14580] gi|52785294|ref|YP_091123.1| YkvL [Bacillus licheniformis ATCC 14580] gi|319646260|ref|ZP_08000490.1| YkvL protein [Bacillus sp. BT1B_CT2] gi|52003134|gb|AAU23076.1| QueE [Bacillus licheniformis ATCC 14580] gi|52347796|gb|AAU40430.1| YkvL [Bacillus licheniformis ATCC 14580] gi|317392010|gb|EFV72807.1| YkvL protein [Bacillus sp. BT1B_CT2] Length = 243 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 84/246 (34%), Gaps = 51/246 (20%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 K + EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ Sbjct: 3 KPIPVLEIFGPTVQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGS 50 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119 ++ E G + ++GG P LL+ LI L + G A+ET Sbjct: 51 AKKDIKWMTAEEVYESLKDIGGNAFSHVTISGGNPALLKQLDGLISLLKENGIRTALETQ 110 Query: 120 GTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-------------VSPENYI 164 GT + GID + +SPK L + ++ + + + Sbjct: 111 GTFYQDWFTGIDDLTISPKPPSSNMKTDFNRLDHIVDRLKEHGRAAAASLKVVIFTADDL 170 Query: 165 GFDFER--------FSLQPMDGPFLEENTNLAISYCFQN--------------PKWRLSV 202 F + F LQ + E+ + Q + R+ Sbjct: 171 QFAKQVHQRYPDIPFFLQVGNDDVHTEDQERLVERLLQKYEQLVEAVTRDPELNRVRVLP 230 Query: 203 QTHKFI 208 Q H I Sbjct: 231 QLHTLI 236 >gi|56698570|ref|YP_168947.1| radical SAM domain-containing protein [Ruegeria pomeroyi DSS-3] gi|56680307|gb|AAV96973.1| radical SAM domain protein [Ruegeria pomeroyi DSS-3] Length = 239 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 75/221 (33%), Gaps = 35/221 (15%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M I EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 1 MTTLRIAEIFGPTIQGEGAVIGAPTVFVRAGGCDY-----------RCSWCDSLHA-VDS 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + + E L+GG P +Q PLI+ +G+ A+ET Sbjct: 49 AYRDTWTAMTTEQVWAEVARLSGGVPLTVSLSGGNPAIQDFGPLIEMGKAQGYRFALETQ 108 Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELK---------------LVFPQVNVSPEN 162 G++ + + + +SPK + +VF + + Sbjct: 109 GSVARGWFRELSPLILSPKPPSSGETVDWDRFADCIARARDAVTVIKIVVFDEADYLWAR 168 Query: 163 YIGFDFER--FSLQPMD-GPFLEENTNLAISY--CFQNPKW 198 + F LQP + P + + AI +W Sbjct: 169 EVAARFPNLPIYLQPGNHTPPPPDAEDAAIDMDGIMARYEW 209 >gi|311067888|ref|YP_003972811.1| queuosine biosynthesis enzyme [Bacillus atrophaeus 1942] gi|310868405|gb|ADP31880.1| queuosine biosynthesis enzyme [Bacillus atrophaeus 1942] Length = 243 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 16/154 (10%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ Sbjct: 5 IPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAK 52 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121 D+ E G + ++GG P LL+ I L ++ A+ET GT Sbjct: 53 KDIRWMTAEDIYSELKEIGGDAFSHVTISGGNPALLKQLDSFITLLKEQNIRTALETQGT 112 Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153 + E ID + +SPK ++L + Sbjct: 113 VYQEWFTLIDDLTISPKPPSSGMTTDFKKLDHIL 146 >gi|15891589|ref|NP_357261.1| radical activating protein [Agrobacterium tumefaciens str. C58] gi|15160025|gb|AAK90046.1| radical activating protein [Agrobacterium tumefaciens str. C58] Length = 251 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 55/142 (38%), Gaps = 15/142 (10%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 I EIF T+QGEG G VF R GC+ +C +CDT + Sbjct: 13 TTVRISEIFGPTIQGEGPLIGLPTVFVRTGGCDY-----------RCSWCDTLHA-VDSE 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + + + +E L+GG P +Q LI G+ A+ET G Sbjct: 61 YRDTWKPMSVEAIWQEVLGLSGGMPLTVSLSGGNPAIQPLGTLIAKGQGEGYRFALETQG 120 Query: 121 TI--EPPQGIDWICVSPKAGCD 140 +I + +D + +SPK Sbjct: 121 SIAKDWFADLDHLVLSPKPPSS 142 >gi|310640608|ref|YP_003945366.1| coenzyme pqq synthesis-like protein [Paenibacillus polymyxa SC2] gi|309245558|gb|ADO55125.1| Coenzyme PQQ synthesis-like protein [Paenibacillus polymyxa SC2] Length = 265 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 83/241 (34%), Gaps = 51/241 (21%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + E+F T+QGEG GR +F R +GC+ C +CD+ F G+ Sbjct: 27 IPVLEVFGPTVQGEGMVIGRKTMFVRTAGCDY-----------HCSWCDSAFTW-DGSAK 74 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121 + D+ +E G + + L+GG P LL LI L +G AVET G+ Sbjct: 75 DQIRRLSATDIWQELKSIGGERFSHVTLSGGNPALLPQLGALITLLRSQGIATAVETQGS 134 Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELK-------------------LVFPQVNVSP 160 E ID + +SPK + L ++F +++ Sbjct: 135 RWQEWLYDIDEVTLSPKPPSSGMTTNWEVLDDIVTRLSNQRMAGACSLKVVIFNDTDLAY 194 Query: 161 ENYIGFDFERF--SLQPMDGPFLEENTNLAISYCFQNPKW--------------RLSVQT 204 I + LQ + ENT +W R+ Q Sbjct: 195 ARTIHERYPHIPLFLQTGNPDVNTENTGQIAESLLHRYEWLIDRVMDDSRLNDVRVLPQL 254 Query: 205 H 205 H Sbjct: 255 H 255 >gi|116253993|ref|YP_769831.1| hypothetical protein RL4256 [Rhizobium leguminosarum bv. viciae 3841] gi|115258641|emb|CAK09745.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 247 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 73/194 (37%), Gaps = 33/194 (17%) Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 5 TIRVSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDSLHA-VESAF 52 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 ++ + + + L+GG P +Q PLI+ + +G+ A+ET G+ Sbjct: 53 RDQWIPMSTEAVWHKVTELSGGKPLTVSLSGGNPAIQPLRPLIELGHSQGYRFALETQGS 112 Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELK----------------LVFPQVNVSPENY 163 + + +D + +SPK + ++ +VF + Sbjct: 113 VAQAWFRDLDTLVISPKPPSSGMLTDWDQVDNCLQLAAGGPEVALKIVVFDDADYEFAQR 172 Query: 164 IGFDFERF--SLQP 175 G + + LQP Sbjct: 173 AGQRYPQIPLFLQP 186 >gi|319957590|ref|YP_004168853.1| radical sam domain protein [Nitratifractor salsuginis DSM 16511] gi|319419994|gb|ADV47104.1| Radical SAM domain protein [Nitratifractor salsuginis DSM 16511] Length = 253 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 83/186 (44%), Gaps = 19/186 (10%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQG 59 ++ + E FL++QGEG +AG + F R GCNL G E D + CDT F + Sbjct: 1 MFWLTEKFLSIQGEGRYAGVPSYFLRTGGCNLHCPGFGAEYDVEGEKRYGCDTWFSVDRA 60 Query: 60 TKGGRYNVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFE 113 V+ A L+EE + V+TGGEPL+ P +++ L +RG + Sbjct: 61 FAARWQAVESAAPLLEEMDRAFLEIGYLPHVVITGGEPLIYAADPAFYEVVEGLVERGVQ 120 Query: 114 IAVETNGTIEPP------QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD 167 I ETNGT+ P +S K G + + + P+V + + G Sbjct: 121 ITFETNGTVAPDFLRYGAYKACTFALSVKLSNS----GEPKERRIHPEVLRTIASEAGEA 176 Query: 168 FERFSL 173 F +F+L Sbjct: 177 FLKFTL 182 >gi|256112302|ref|ZP_05453223.1| Radical SAM domain protein [Brucella melitensis bv. 3 str. Ether] gi|265993735|ref|ZP_06106292.1| radical SAM domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|262764716|gb|EEZ10637.1| radical SAM domain-containing protein [Brucella melitensis bv. 3 str. Ether] Length = 251 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 15 IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 63 HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSV 122 Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 + +D + +SPK L P + F Sbjct: 123 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 168 >gi|225628173|ref|ZP_03786208.1| Radical SAM domain protein [Brucella ceti str. Cudo] gi|237816336|ref|ZP_04595329.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Brucella abortus str. 2308 A] gi|225616998|gb|EEH14045.1| Radical SAM domain protein [Brucella ceti str. Cudo] gi|237788403|gb|EEP62618.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Brucella abortus str. 2308 A] gi|326539690|gb|ADZ87905.1| radical SAM domain protein [Brucella melitensis M5-90] Length = 252 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 16 IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 63 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 64 HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSV 123 Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 + +D + +SPK L P + F Sbjct: 124 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 169 >gi|306843411|ref|ZP_07476012.1| Radical SAM domain protein [Brucella sp. BO1] gi|306276102|gb|EFM57802.1| Radical SAM domain protein [Brucella sp. BO1] Length = 247 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 11 IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 58 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 59 HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSV 118 Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 + +D + +SPK L P + F Sbjct: 119 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 164 >gi|23502822|ref|NP_698949.1| radical activating enzyme [Brucella suis 1330] gi|62290822|ref|YP_222615.1| radical activating protein [Brucella abortus bv. 1 str. 9-941] gi|82700734|ref|YP_415308.1| proline-rich extensin:radical SAM family protein [Brucella melitensis biovar Abortus 2308] gi|161619892|ref|YP_001593779.1| radical SAM domain-containing protein [Brucella canis ATCC 23365] gi|163843996|ref|YP_001628400.1| radical SAM domain-containing protein [Brucella suis ATCC 23445] gi|225853410|ref|YP_002733643.1| radical SAM domain-containing protein [Brucella melitensis ATCC 23457] gi|254694602|ref|ZP_05156430.1| Radical SAM domain protein [Brucella abortus bv. 3 str. Tulya] gi|254696227|ref|ZP_05158055.1| Radical SAM domain protein [Brucella abortus bv. 2 str. 86/8/59] gi|254704982|ref|ZP_05166810.1| Radical SAM domain protein [Brucella suis bv. 3 str. 686] gi|254731145|ref|ZP_05189723.1| Radical SAM domain protein [Brucella abortus bv. 4 str. 292] gi|256045575|ref|ZP_05448455.1| Radical SAM domain protein [Brucella melitensis bv. 1 str. Rev.1] gi|256158470|ref|ZP_05456368.1| Radical SAM domain protein [Brucella ceti M490/95/1] gi|256253889|ref|ZP_05459425.1| Radical SAM domain protein [Brucella ceti B1/94] gi|256263110|ref|ZP_05465642.1| radical SAM domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|256370376|ref|YP_003107887.1| queuosine biosynthesis protein QueE [Brucella microti CCM 4915] gi|260169391|ref|ZP_05756202.1| queuosine biosynthesis protein QueE [Brucella sp. F5/99] gi|260546089|ref|ZP_05821829.1| radical SAM domain-containing protein [Brucella abortus NCTC 8038] gi|260562886|ref|ZP_05833372.1| radical SAM domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260567544|ref|ZP_05838014.1| radical SAM domain-containing protein [Brucella suis bv. 4 str. 40] gi|260758876|ref|ZP_05871224.1| radical SAM domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260760600|ref|ZP_05872943.1| radical SAM domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|261214926|ref|ZP_05929207.1| radical SAM domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|261221026|ref|ZP_05935307.1| radical SAM domain-containing protein [Brucella ceti B1/94] gi|261755683|ref|ZP_05999392.1| radical SAM domain-containing protein [Brucella suis bv. 3 str. 686] gi|261758913|ref|ZP_06002622.1| radical SAM domain-containing protein [Brucella sp. F5/99] gi|265991999|ref|ZP_06104556.1| radical SAM domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|265996986|ref|ZP_06109543.1| radical SAM domain-containing protein [Brucella ceti M490/95/1] gi|23348846|gb|AAN30864.1| radical activating enzyme, putative [Brucella suis 1330] gi|62196954|gb|AAX75254.1| hypothetical radical activating enzyme [Brucella abortus bv. 1 str. 9-941] gi|82616835|emb|CAJ11931.1| Proline-rich extensin:Radical SAM [Brucella melitensis biovar Abortus 2308] gi|161336703|gb|ABX63008.1| Radical SAM domain protein [Brucella canis ATCC 23365] gi|163674719|gb|ABY38830.1| Radical SAM domain protein [Brucella suis ATCC 23445] gi|225641775|gb|ACO01689.1| Radical SAM domain protein [Brucella melitensis ATCC 23457] gi|256000539|gb|ACU48938.1| queuosine biosynthesis protein QueE [Brucella microti CCM 4915] gi|260096196|gb|EEW80072.1| radical SAM domain-containing protein [Brucella abortus NCTC 8038] gi|260152902|gb|EEW87994.1| radical SAM domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260157062|gb|EEW92142.1| radical SAM domain-containing protein [Brucella suis bv. 4 str. 40] gi|260669194|gb|EEX56134.1| radical SAM domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260671032|gb|EEX57853.1| radical SAM domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260916533|gb|EEX83394.1| radical SAM domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|260919610|gb|EEX86263.1| radical SAM domain-containing protein [Brucella ceti B1/94] gi|261738897|gb|EEY26893.1| radical SAM domain-containing protein [Brucella sp. F5/99] gi|261745436|gb|EEY33362.1| radical SAM domain-containing protein [Brucella suis bv. 3 str. 686] gi|262551454|gb|EEZ07444.1| radical SAM domain-containing protein [Brucella ceti M490/95/1] gi|263003065|gb|EEZ15358.1| radical SAM domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|263093011|gb|EEZ17161.1| radical SAM domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|326409973|gb|ADZ67038.1| radical SAM domain-containing protein [Brucella melitensis M28] Length = 251 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 15 IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 63 HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSV 122 Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 + +D + +SPK L P + F Sbjct: 123 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 168 >gi|303229411|ref|ZP_07316201.1| radical SAM domain family protein [Veillonella atypica ACS-134-V-Col7a] gi|303230757|ref|ZP_07317504.1| radical SAM domain family protein [Veillonella atypica ACS-049-V-Sch6] gi|302514517|gb|EFL56512.1| radical SAM domain family protein [Veillonella atypica ACS-049-V-Sch6] gi|302515947|gb|EFL57899.1| radical SAM domain family protein [Veillonella atypica ACS-134-V-Col7a] Length = 220 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 89/227 (39%), Gaps = 43/227 (18%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 ++ E+F ++ GEG G + F R CN +C +CDT + + Sbjct: 6 NVIELFSSIDGEGKRQGFLTTFLRLHDCN-----------IRCSYCDTLYSYGPESTFES 54 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRG--FEIAVETNG 120 +V +AD+IE+ E +TGGEPLLQ + LI L +R ++ +ETNG Sbjct: 55 MSVQAVADVIEQL------ENHRITVTGGEPLLQEPAIIELIDELTRRNARYDFNIETNG 108 Query: 121 TIEPPQGID--WICVSPKAGCDLKIKG-----------GQELKLVF---PQVNVSPENYI 164 TI P D W K L +K V ++ E Sbjct: 109 TIIPSFHRDNVWFTYDYKTPSSLAEDAMNLDIFKVATPADIIKFVVGSMQDLDRMNEILK 168 Query: 165 GFDFE-RFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 + E + + P+ G +E T + Y + R +Q HKFI Sbjct: 169 TYTTEAQIFVSPVWG-NIEGAT--IVDYMKAHDWQNVRFQLQIHKFI 212 >gi|254718024|ref|ZP_05179835.1| Radical SAM domain protein [Brucella sp. 83/13] gi|265982972|ref|ZP_06095707.1| radical SAM domain-containing protein [Brucella sp. 83/13] gi|306839805|ref|ZP_07472606.1| Radical SAM domain protein [Brucella sp. NF 2653] gi|264661564|gb|EEZ31825.1| radical SAM domain-containing protein [Brucella sp. 83/13] gi|306405160|gb|EFM61438.1| Radical SAM domain protein [Brucella sp. NF 2653] Length = 247 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 11 IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 58 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 59 HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIEHGKAEGYRFALETQGSV 118 Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 + +D + +SPK L P + F Sbjct: 119 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 164 >gi|149203608|ref|ZP_01880577.1| radical activating protein [Roseovarius sp. TM1035] gi|149142725|gb|EDM30767.1| radical activating protein [Roseovarius sp. TM1035] Length = 240 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 75/192 (39%), Gaps = 32/192 (16%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G+ VF R GC+ +C +CD+ ++ Sbjct: 5 IRVSEIFGPTIQGEGALIGQPTVFVRTGGCDY-----------RCVWCDSLHA-VESAYR 52 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + ++ E L+GG P +Q LI + RG+ A+ET G++ Sbjct: 53 ETWVPMSPEVVLAEVARLSGGRPIMVTLSGGNPAIQPLGALIDLGHARGYRFAMETQGSV 112 Query: 123 --EPPQGIDWICVSPKA---GCDLKIKGGQE-----------LKL-VFPQVNVSPENYIG 165 + +D + +SPK G ++ + LK+ VF + + + Sbjct: 113 ARDWFAALDMLVLSPKPPSSGMEVDWALFDDCVAAAKGAASVLKIVVFDEADYEWARAVA 172 Query: 166 FDFER--FSLQP 175 + + LQP Sbjct: 173 GRYPQLPLYLQP 184 >gi|149916377|ref|ZP_01904897.1| radical activating protein [Roseobacter sp. AzwK-3b] gi|149809831|gb|EDM69683.1| radical activating protein [Roseobacter sp. AzwK-3b] Length = 242 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 86/244 (35%), Gaps = 60/244 (24%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 7 IRVSEIFGPTIQGEGALIGVPTVFVRTGGCDY-----------RCSWCDSLHA-VDSAFR 54 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + ++ E L+GG P +Q +I+ + RG+ A+ET G++ Sbjct: 55 ETWAPMTPDAIMAEIEKLSGGRPLLVSLSGGNPAIQPLGEVIRLGHTRGYGFALETQGSV 114 Query: 123 --EPPQGIDWICVSPKA--------------------GCDLKIKGGQELKLVFPQVNVSP 160 + +D + +SPK G D+ +K ++F + + Sbjct: 115 AKDWFSELDMLVLSPKPPSSGMEVDWAAFDACIAAGQGADMVMKI-----VIFDETDYDW 169 Query: 161 ENYIGFDFER--FSLQP--------------MDGPFLEENTNLAISYCFQNPKW---RLS 201 + + + LQP +D L+ + + Q+ W R+ Sbjct: 170 ARKVAGRYPQLPLFLQPGNHTPPPPGDDAARVDQDGLDARMRWLVDHVTQD-GWFEARVL 228 Query: 202 VQTH 205 Q H Sbjct: 229 PQLH 232 >gi|254700612|ref|ZP_05162440.1| Radical SAM domain protein [Brucella suis bv. 5 str. 513] gi|261751121|ref|ZP_05994830.1| radical SAM domain-containing protein [Brucella suis bv. 5 str. 513] gi|261740874|gb|EEY28800.1| radical SAM domain-containing protein [Brucella suis bv. 5 str. 513] Length = 251 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 15 IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 63 HEWKPMSVEAIWHEVTTLSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSV 122 Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 + +D + +SPK L P + F Sbjct: 123 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 168 >gi|254489194|ref|ZP_05102398.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Roseobacter sp. GAI101] gi|214042202|gb|EEB82841.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Roseobacter sp. GAI101] Length = 245 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 55/143 (38%), Gaps = 15/143 (10%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M I EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 7 MTQLRIAEIFGPTIQGEGALIGEPTVFVRTGGCDY-----------RCSWCDSLHA-VDS 54 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + + + + L+GG P +Q LI +G+ A ET Sbjct: 55 AFRHTWAPMTTEAVWADVVRLSKGRPLTVSLSGGNPAIQDFTALIARGQAQGYRFACETQ 114 Query: 120 GTIEPP--QGIDWICVSPKAGCD 140 G+I P +D + +SPK Sbjct: 115 GSIAKPWFADLDTLVLSPKPPSS 137 >gi|254713614|ref|ZP_05175425.1| Radical SAM domain protein [Brucella ceti M644/93/1] gi|254716032|ref|ZP_05177843.1| Radical SAM domain protein [Brucella ceti M13/05/1] gi|261217800|ref|ZP_05932081.1| radical SAM domain-containing protein [Brucella ceti M13/05/1] gi|261321352|ref|ZP_05960549.1| radical SAM domain-containing protein [Brucella ceti M644/93/1] gi|260922889|gb|EEX89457.1| radical SAM domain-containing protein [Brucella ceti M13/05/1] gi|261294042|gb|EEX97538.1| radical SAM domain-containing protein [Brucella ceti M644/93/1] Length = 243 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 7 IRISEIFSPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 54 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 55 HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSV 114 Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 + +D + +SPK L P + F Sbjct: 115 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 160 >gi|260463745|ref|ZP_05811943.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Mesorhizobium opportunistum WSM2075] gi|319785229|ref|YP_004144705.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259030599|gb|EEW31877.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Mesorhizobium opportunistum WSM2075] gi|317171117|gb|ADV14655.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 244 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 82/241 (34%), Gaps = 53/241 (21%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 8 IRVSEIFGPTIQGEGVLIGLPTVFIRTGGCDY-----------RCSWCDSLHA-VDNQFR 55 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + + + L+GG P +Q LI+ + G+ A+ET ++ Sbjct: 56 HEWKMMPVDAVWQSVVALSGARPVMVSLSGGNPAIQPFGGLIERGHAEGYRFALETQASV 115 Query: 123 --EPPQGIDWICVSPKAGCDLK----------IKGGQE-----LKLVFPQVNVSPENYIG 165 + +D + +SPK I+ +E LKLV + S + Sbjct: 116 AKDWFAELDVLVLSPKPPSSEMRTDWVAFEACIEAAREKPQVVLKLVI--FDESDYAFAK 173 Query: 166 FDFERF-----SLQPMDGPFLEENTN-LAISY--CFQNPKW-------------RLSVQT 204 RF LQP + A+ + +W R+ Q Sbjct: 174 DAAARFPSLPVYLQPGNHTPPRRGEEDAAVDLAGIMRRMEWLIEKVTQDRWFEARVLPQL 233 Query: 205 H 205 H Sbjct: 234 H 234 >gi|297568917|ref|YP_003690261.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924832|gb|ADH85642.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 241 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 81/222 (36%), Gaps = 44/222 (19%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF +LQGE HAG +F R +GCNL +C +CD + + G Sbjct: 31 VAEIFYSLQGESSHAGYPCIFVRLAGCNL-----------RCVYCDARYTYEEA--GTCR 77 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE- 123 + ++ I E +TGGEPLLQ +V L+ AL ++ +ETNGTI Sbjct: 78 TIAEVMAAIAEL-----PPVSRVEITGGEPLLQEEVYSLLNALLADQRQVLLETNGTISL 132 Query: 124 --PPQGI----DWICVSPKAGCDL--------KIKGGQELKLV------FPQVNVSPENY 163 P + D C P +G ++ E+K V + Y Sbjct: 133 ARVPAAVHCIMDVKC--PGSGMAEHLDRENFRRLTDRDEIKFVLSDRRDYDWARKIINEY 190 Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205 D P+ + RL +Q H Sbjct: 191 QLADHPHLIFSPVTNRLQPSELAAWLLADALPA--RLQLQLH 230 >gi|322383448|ref|ZP_08057228.1| queuosine biosynthesis enzyme-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152249|gb|EFX45075.1| queuosine biosynthesis enzyme-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 240 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 16/141 (11%) Query: 8 EIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66 EIF T+QGEG G+ +F R +GC+ +C +CD+ F G+ + Sbjct: 3 EIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCSWCDSSFTW-DGSGKDQIR 50 Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--E 123 + D++EE G K + ++GG P LL L+ L +G A+ET G+ + Sbjct: 51 MLSPEDIVEELKRLGGKRFSHVTISGGNPVLLSQMGKLVSLLQSQGIRTAIETQGSKWQD 110 Query: 124 PPQGIDWICVSPKAGCDLKIK 144 +D + +SPK Sbjct: 111 WLLAVDDVTLSPKPPSSGMTT 131 >gi|126737387|ref|ZP_01753122.1| radical activating protein [Roseobacter sp. SK209-2-6] gi|126721972|gb|EBA18675.1| radical activating protein [Roseobacter sp. SK209-2-6] Length = 235 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 85/238 (35%), Gaps = 47/238 (19%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 I EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 1 MTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDSLHA-VDSE 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + ++ +E + ++GG P +Q PLI+ + G+ A ET G Sbjct: 49 NRHDWAKMSADEVFDEVCRLSGGKPLTVSISGGNPAIQDFAPLIRLGHAAGYGFACETQG 108 Query: 121 TIEPP--QGIDWICVSPKAGC----------DLKIKGGQELKLVFPQVNVSPENYIGFDF 168 +I P +D + +SPK D +K + + V ++ + + + Sbjct: 109 SIAKPWFGDLDTLVLSPKPPSSGEDTDWSSFDACLKAAEACEQVVMKIVIFDDADYAWAK 168 Query: 169 ER--------FSLQPMDGPFLEE-------NTNL---AISYCFQNPKW---RLSVQTH 205 E LQP + E T+ I + +W R+ Q H Sbjct: 169 EASARYPDLPLYLQPGNPEVDPELPVDLNQATDRLLWLIEKVTAD-QWYTPRVLPQLH 225 >gi|150377056|ref|YP_001313652.1| radical SAM domain-containing protein [Sinorhizobium medicae WSM419] gi|150031603|gb|ABR63719.1| Radical SAM domain protein [Sinorhizobium medicae WSM419] Length = 245 Score = 128 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 51/239 (21%), Positives = 89/239 (37%), Gaps = 49/239 (20%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G VF R GC+ +C +CD+ ++ + Sbjct: 9 IRVSEIFGPTIQGEGVLIGLPTVFVRSGGCDY-----------RCSWCDSLHA-VESSYR 56 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 ++ + +E E L+GG P +Q LI ++ G+ A+ET G+I Sbjct: 57 HEWHAMSTEAVWQEIVRLSRGEAVMVSLSGGNPAIQPFGDLIGRGHRNGYRFALETQGSI 116 Query: 123 --EPPQGIDWICVSPKAGCD------------LKIKGGQE---LKL-VFPQVNVSPENYI 164 E +D + +SPK L++ G+ LK VF + + + Sbjct: 117 AREWFAELDVLVLSPKPPSSGMETDWQAFDVCLRMAAGKPQTVLKFVVFDEADYAYARAA 176 Query: 165 GFDFERF--SLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQTH 205 LQP + P +++ + + + +W R+ Q H Sbjct: 177 AARHPHLPVYLQPGNHTPPPSDDKDAPIDLEGVMERMRWLVDATIEDGWFEARVLPQLH 235 >gi|110636375|ref|YP_676583.1| radical SAM family protein [Mesorhizobium sp. BNC1] gi|110287359|gb|ABG65418.1| preQ(0) biosynthesis protein QueE [Chelativorans sp. BNC1] Length = 246 Score = 128 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 80/239 (33%), Gaps = 49/239 (20%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 10 IRVAEIFGPTIQGEGPLIGLPTVFVRTGGCDY-----------RCAWCDSLHA-VDTQYR 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + E+ + L+GG P +Q LI G+ A+ET G++ Sbjct: 58 HDWEPMTAKAVWEKVQVLSANTPLMVSLSGGNPAIQPLGDLIALGKSSGYRFALETQGSL 117 Query: 123 --EPPQGIDWICVSPKAGCDLK----------IKGGQE-----LKLV-FPQVNVSPENYI 164 E +D + +SPK I E LK+V F + + + + Sbjct: 118 AREWFSELDVLIISPKPPSSGMEMDWQRLSDCIARAGEGTEVALKIVIFDEADYAFARAV 177 Query: 165 GFDF--ERFSLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQTH 205 LQP + P + I + +W R+ Q H Sbjct: 178 SARHGGLPLYLQPGNHTPPPADAHYAPIDIEGVMRRMRWLINKVAADAWFSVRVLPQLH 236 >gi|254707503|ref|ZP_05169331.1| Radical SAM domain protein [Brucella pinnipedialis M163/99/10] gi|254708957|ref|ZP_05170768.1| Radical SAM domain protein [Brucella pinnipedialis B2/94] gi|256030484|ref|ZP_05444098.1| Radical SAM domain protein [Brucella pinnipedialis M292/94/1] gi|261314986|ref|ZP_05954183.1| radical SAM domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261316456|ref|ZP_05955653.1| radical SAM domain-containing protein [Brucella pinnipedialis B2/94] gi|265987526|ref|ZP_06100083.1| radical SAM domain-containing protein [Brucella pinnipedialis M292/94/1] gi|261295679|gb|EEX99175.1| radical SAM domain-containing protein [Brucella pinnipedialis B2/94] gi|261304012|gb|EEY07509.1| radical SAM domain-containing protein [Brucella pinnipedialis M163/99/10] gi|264659723|gb|EEZ29984.1| radical SAM domain-containing protein [Brucella pinnipedialis M292/94/1] Length = 251 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 15 IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 63 HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGTLIKHGKAEGYRFALETQGSV 122 Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 + +D + +SPK L P + F Sbjct: 123 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 168 >gi|229917714|ref|YP_002886360.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Exiguobacterium sp. AT1b] gi|229469143|gb|ACQ70915.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Exiguobacterium sp. AT1b] Length = 236 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 87/239 (36%), Gaps = 51/239 (21%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + E+F T QGEG G+ +F R +GC+ +C +CD+ F K Sbjct: 8 IPVLEVFGPTFQGEGRAIGQKTMFVRTAGCDY-----------RCSWCDSAFTWDGSEKP 56 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGT 121 D++ ++ + Y ++GG PLL L+ L KRG +AVET G+ Sbjct: 57 DMLTADEVIARLDALGMYD-----YVTISGGNPLLIAAMEDLVVKLKKRGVTLAVETQGS 111 Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV------------NVSPENYIGFD 167 + ID + +SPK ++L + ++ + + Y Sbjct: 112 RYQDWLTQIDDVTLSPKPPSSGMKTNWEQLDAIVERLRPEQTTFKVAVFDEADLAYAKEV 171 Query: 168 FERF-----SLQ---PMDGPF-------LEENTNLAISYCFQNPKW---RLSVQTHKFI 208 +R+ L P G L L ++P W R+ Q H + Sbjct: 172 QQRYSPDVMYLSAGNPEPGADGDITDAQLRRLKQLWED-VARDPSWQSVRVLPQLHTLL 229 >gi|36958586|gb|AAQ87054.1| ExsD protein [Sinorhizobium fredii NGR234] Length = 245 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 15/140 (10%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 9 IRVSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDSLHA-VDSAYR 56 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + ++ E + L+GG P +Q LI + G+ A+ET G++ Sbjct: 57 DEWRAMTTDEVWSEVTQLSGGQPVMVSLSGGNPAIQPFGALIARGHAEGYRFALETQGSV 116 Query: 123 --EPPQGIDWICVSPKAGCD 140 + +D + +SPK Sbjct: 117 ARDWFAELDMLVLSPKPPSS 136 >gi|227820048|ref|YP_002824019.1| radical SAM domain protein [Sinorhizobium fredii NGR234] gi|227339047|gb|ACP23266.1| radical SAM domain protein [Sinorhizobium fredii NGR234] Length = 242 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 15/140 (10%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 6 IRVSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDSLHA-VDSAYR 53 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + ++ E + L+GG P +Q LI + G+ A+ET G++ Sbjct: 54 DEWRAMTTDEVWSEVTQLSGGQPVMVSLSGGNPAIQPFGALIARGHAEGYRFALETQGSV 113 Query: 123 --EPPQGIDWICVSPKAGCD 140 + +D + +SPK Sbjct: 114 ARDWFAELDMLVLSPKPPSS 133 >gi|99081885|ref|YP_614039.1| radical SAM family protein [Ruegeria sp. TM1040] gi|99038165|gb|ABF64777.1| Radical SAM [Ruegeria sp. TM1040] Length = 235 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 81/243 (33%), Gaps = 57/243 (23%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 I EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 1 MTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDSLHA-VDSA 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + + + +E + L+GG P +Q PLI G+ A ET G Sbjct: 49 HRHSWAAMETEAVWQEVRRLSGDQPLTVSLSGGNPAIQDFGPLIARGKAAGYRFACETQG 108 Query: 121 TIEPPQGIDW--ICVSPKAGCD-----------------------LKIKGGQELKLVFPQ 155 +I P D + +SPK +KI E ++ + Sbjct: 109 SIPRPWFSDLETLVLSPKPPSSGEDVDWGAFIACRKIGAGARQQVMKIVIFDEADYLWAR 168 Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW-------------RLSV 202 + + LQP P ++ T + ++ + +W R+ Sbjct: 169 EVHRRHSDLPL-----YLQP-GNPEVDPETPVDLNAQAERLRWLTERAMGERWFAPRILP 222 Query: 203 QTH 205 Q H Sbjct: 223 QLH 225 >gi|325969441|ref|YP_004245633.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28] gi|323708644|gb|ADY02131.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28] Length = 218 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 22/140 (15%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + E+F + QGEG HAG AVF R + CNL +C +CDT + + G G Sbjct: 3 VVEVFRSWQGEGPHAGEEAVFLRLARCNL-----------RCVWCDTKYSWLGGVSMG-- 49 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123 + + G E ++ V+TGGEPLL L+ + RG+ + VETNGT+ Sbjct: 50 ----IDAVFRRLIEVGGDEIKHLVITGGEPLLWWRELRQLLIIVKGRGWFVEVETNGTLR 105 Query: 124 PPQGIDWI---CVSPKAGCD 140 P + +D++ VS K Sbjct: 106 PGELLDYVDEFNVSSKLSNS 125 >gi|21673157|ref|NP_661222.1| radical activating enzyme, putative [Chlorobium tepidum TLS] gi|21646235|gb|AAM71564.1| radical activating enzyme, putative [Chlorobium tepidum TLS] Length = 220 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 78/230 (33%), Gaps = 49/230 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 +I EIF ++QGE AG F R +GC CR+CDT + G Sbjct: 7 LNISEIFYSIQGESSFAGWPCAFVRLAGC-----------GHGCRYCDTTYA---EEPGT 52 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 +D++ + + +TGGEPLLQ L+ AL R + +ET G + Sbjct: 53 AMTIDEIMHRVLA------FDAPCVEVTGGEPLLQSGTFGLLSALCDRHPVVLLETGGFL 106 Query: 123 EPP-------QGIDWICVSPKAG-----------------CDLKIKGGQELKLVFPQVNV 158 ID S + KI E ++ + + Sbjct: 107 PVDRVDPRVHAIIDIKAPSSGVMEHNCAANFTLALNEPERFEFKIVVASEADYLWAKSYI 166 Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + +G P+ G LA R+ +Q HK+I Sbjct: 167 AGHGILG--KCSIIFGPVFGQLEPRL--LAEWMLRDRLPVRMQLQLHKYI 212 >gi|148559581|ref|YP_001259791.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Brucella ovis ATCC 25840] gi|148370838|gb|ABQ60817.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Brucella ovis ATCC 25840] Length = 247 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 11 IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 58 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 59 HEWKPISVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSV 118 Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 + +D + +SPK L P + F Sbjct: 119 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 164 >gi|294498043|ref|YP_003561743.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus megaterium QM B1551] gi|294347980|gb|ADE68309.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus megaterium QM B1551] Length = 243 Score = 127 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 16/156 (10%) Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + EIF T+QGEG GR +F R +GC+ C +CD+ F G+ Sbjct: 4 TIPVLEIFGPTIQGEGMVVGRKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSA 51 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNG 120 + E G + + ++GG P L++ L++ L+ G + A+ET G Sbjct: 52 KNDIRQLTAEQIWTELKEIGGECFDHVTISGGNPALIKAIGSLVELLHSHGVKAALETQG 111 Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154 + + ID + +SPK L L + Sbjct: 112 SRYQDWFLKIDDLTISPKPPSSLMKTNFSVLDDIIE 147 >gi|254464092|ref|ZP_05077503.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Rhodobacterales bacterium Y4I] gi|206685000|gb|EDZ45482.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Rhodobacterales bacterium Y4I] Length = 236 Score = 127 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 70/196 (35%), Gaps = 33/196 (16%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M I EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 1 MTTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDSMHA-VDS 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + V D++ E + ++GG P +Q P+I + G+ A ET Sbjct: 49 AYRHDWAVKTPEDVMAEVRRLSGGKPLTVSISGGNPAIQDFAPVIAIGKEEGYRFACETQ 108 Query: 120 GTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQV-------------NVSPENYI 164 G++ P +D + +SPK + + Q + + + Sbjct: 109 GSVSQPWFADLDTLVLSPKPPSSGEKTDWHKFTCCLHQAKGCGQAVMKIVVFDDTDYAWA 168 Query: 165 GFDFER-----FSLQP 175 ER LQP Sbjct: 169 KAAAERHPELPLYLQP 184 >gi|147677735|ref|YP_001211950.1| organic radical activating enzymes [Pelotomaculum thermopropionicum SI] gi|146273832|dbj|BAF59581.1| organic radical activating enzymes [Pelotomaculum thermopropionicum SI] Length = 245 Score = 127 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 64/258 (24%), Positives = 87/258 (33%), Gaps = 64/258 (24%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG- 59 M+ Y + EIF ++QGEG G VF RF GCNL C FCDT + G Sbjct: 1 MRAY-VSEIFSSVQGEGLLTGCRQVFIRFYGCNL-----------NCSFCDTKYGGPPAC 48 Query: 60 ------TKGGRY----NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQAL 107 GG + N ++ + LTGGEPLL LI + Sbjct: 49 CRIESLPAGGDFRYLPNPLKVGEAASAAASYDLSLHHSVSLTGGEPLLHTAFLKELIPLV 108 Query: 108 NKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLKIKGGQE-------------- 148 I +ETNGT+ ID + + K + E Sbjct: 109 KGTRHGIYLETNGTLPGNLLEVIDLIDMVSMDFKLPSVSGMPPFWEKHWDFLKIAASRKV 168 Query: 149 -LKLVFPQVNVSPENYIGFDFER-------FSLQPMDGPFLE---------ENTNLAISY 191 +K+V Q E + +QP+ G E LA+ + Sbjct: 169 LVKVVVGQNTAHEEIEKSASIIKSVSSNIPMVIQPVTGSDGTLGITASRVLELQKLALKF 228 Query: 192 CFQNPKWRLSVQTHKFIG 209 R+ QTHK IG Sbjct: 229 L---NDVRVIPQTHKVIG 243 >gi|308067859|ref|YP_003869464.1| Organic radical activating enzyme [Paenibacillus polymyxa E681] gi|305857138|gb|ADM68926.1| Organic radical activating enzyme [Paenibacillus polymyxa E681] Length = 287 Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 16/157 (10%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + E+F T+QGEG GR +F R +GC+ C +CD+ F G+ Sbjct: 22 IPVLEVFGPTVQGEGMVIGRKTMFVRTAGCDY-----------HCSWCDSAFTW-DGSAK 69 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121 + D+ +E G + + L+GG P LL LI L +G AVET G+ Sbjct: 70 DQIRRLSATDIWQELKAIGGERFSHVTLSGGNPALLPQLGELITLLRSQGIATAVETQGS 129 Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156 E ID + +SPK L + ++ Sbjct: 130 RWQEWLYDIDEVTLSPKPPSSGMTTNWGVLDDIVARL 166 >gi|295703393|ref|YP_003596468.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus megaterium DSM 319] gi|294801052|gb|ADF38118.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus megaterium DSM 319] Length = 243 Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 16/156 (10%) Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + EIF T+QGEG GR +F R +GC+ C +CD+ F G+ Sbjct: 4 TIPVLEIFGPTIQGEGMVVGRKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSA 51 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNG 120 + E G + + ++GG P L++ L++ L+ G + A+ET G Sbjct: 52 KNDIRQLTAEQIWTELKEIGGECFDHVTISGGNPALIKAIGSLVELLHSHGVKAALETQG 111 Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154 + + ID + +SPK L L + Sbjct: 112 SRYQDWFLKIDDLTISPKPPSSLMKTNFAVLDDIIE 147 >gi|228475320|ref|ZP_04060044.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus hominis SK119] gi|314936991|ref|ZP_07844338.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus hominis subsp. hominis C80] gi|228270696|gb|EEK12110.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus hominis SK119] gi|313655610|gb|EFS19355.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Staphylococcus hominis subsp. hominis C80] Length = 238 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 16/158 (10%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + EIF T+QGEG GR +F R +GC+ +C +CD+ F G+ Sbjct: 3 SKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGS 50 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119 + D+ + G + + ++GG P L++ L+ ++ A+ET Sbjct: 51 AKDDIELLTAQDIYDRLKEIGGNQFDHVTISGGNPALIKGIQDLVDLFEEKNIFTALETQ 110 Query: 120 GTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155 G+ P + I+ + +SPK + + L V Q Sbjct: 111 GSKFQPWMRQINDLTISPKPPSSNMVPNLEILDSVIEQ 148 >gi|254690112|ref|ZP_05153366.1| Radical SAM domain protein [Brucella abortus bv. 6 str. 870] gi|256258366|ref|ZP_05463902.1| Radical SAM domain protein [Brucella abortus bv. 9 str. C68] gi|260755651|ref|ZP_05867999.1| radical SAM domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260884676|ref|ZP_05896290.1| radical SAM domain-containing protein [Brucella abortus bv. 9 str. C68] gi|297247208|ref|ZP_06930926.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Brucella abortus bv. 5 str. B3196] gi|260675759|gb|EEX62580.1| radical SAM domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260874204|gb|EEX81273.1| radical SAM domain-containing protein [Brucella abortus bv. 9 str. C68] gi|297174377|gb|EFH33724.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Brucella abortus bv. 5 str. B3196] Length = 251 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 15 IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 63 HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKFEGYRFALETQGSV 122 Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 + +D + +SPK L P + F Sbjct: 123 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 168 >gi|298250150|ref|ZP_06973954.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Ktedonobacter racemifer DSM 44963] gi|297548154|gb|EFH82021.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Ktedonobacter racemifer DSM 44963] Length = 247 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 15/136 (11%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I E+F T+QGEG G+ VF R GC+ +C+ CDT + + G Sbjct: 9 ISELFGCTIQGEGALIGKPTVFVRTGGCDY-----------RCQRCDTLYAVLP-EHRGE 56 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + ++ + L+GG P +Q L+ + G+ A+ET G+I Sbjct: 57 WQQMTTQEVFAQVRELAHNRPILVTLSGGNPAMQPLEELLDLGHTEGYTFAIETQGSIAQ 116 Query: 125 P--QGIDWICVSPKAG 138 P +D++ +SPKA Sbjct: 117 PWFAKLDYLTLSPKAP 132 >gi|205373223|ref|ZP_03226027.1| radical SAM domain-containing protein [Bacillus coahuilensis m4-4] Length = 252 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 18/169 (10%) Query: 1 MKL--YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI 57 M+L + + EIF T+QGEG G+ +F R +GC+ C +CD+ F Sbjct: 1 MRLNKFPVLEIFGPTVQGEGMVIGQKTMFIRTAGCDY-----------SCSWCDSSFTW- 48 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAV 116 G+ + ++ E G + + ++GG P LL+ L+ + G + A+ Sbjct: 49 DGSAKEDIRLLSADEIWSELVQVGGECFNHVTISGGNPALLKHLNELLDVFHNHGIQSAL 108 Query: 117 ETNGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY 163 ET G+ + ID + +SPK L + ++ V+ + + Sbjct: 109 ETQGSRWQDWFLDIDDLTLSPKPPSSGMTTDFSILDSIIQKLLVNNKAF 157 >gi|254476144|ref|ZP_05089530.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Ruegeria sp. R11] gi|214030387|gb|EEB71222.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Ruegeria sp. R11] Length = 235 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 56/243 (23%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M L I EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 1 MSL-RIAEIFGPTIQGEGALIGEPTVFVRTGGCDY-----------RCSWCDSLHA-VDS 47 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + D+ E + L+GG P +Q LI + G+ A ET Sbjct: 48 KFRDTWMPMTTRDVWAEVTHLSGGQPLTVSLSGGNPAIQDFAELIAMGKEAGYRFACETQ 107 Query: 120 GTI--EPPQGIDWICVSPKAGCD-----------------------LKIKGGQELKLVFP 154 G+I +D + +SPK LKI E+ + Sbjct: 108 GSINQAWFSKLDTLVLSPKPPSSGHKVDWLKFGSCLAAAKDCPNVVLKIVVFDEVDYDWA 167 Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEEN------TNLAISYCFQNP---KW---RLSV 202 +V + LQP + E T + + KW R+ Sbjct: 168 RVVADRYPELPL-----YLQPGNPTVDPETPVDLTETTARLRWLIDKVTADKWFAPRVLP 222 Query: 203 QTH 205 Q H Sbjct: 223 QLH 225 >gi|291279399|ref|YP_003496234.1| hypothetical protein DEFDS_1008 [Deferribacter desulfuricans SSM1] gi|290754101|dbj|BAI80478.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 231 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 59/244 (24%), Positives = 88/244 (36%), Gaps = 46/244 (18%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI--- 57 M +KEIF ++QGEG + G +F RF+GCN C CDT++ Sbjct: 1 MSKAFVKEIFKSVQGEGKYVGARQLFIRFAGCN-----------INCVGCDTNYTVDRYF 49 Query: 58 ---QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGF 112 D L +L+ + LTGGEPL+ D +Q L G Sbjct: 50 LCCDKKYENPVTPDNLFNLVVNNFDLNLFHS--VSLTGGEPLIYCDFLKLFLQYLKNAGV 107 Query: 113 EIAVETNGTI-----EPPQGIDWICVSPK----------AGCDLKIKGGQE---LKLVF- 153 +ET+G I E +D I V K +K+K E K+V Sbjct: 108 RTFLETSGLIVDSILELEDYLDIISVDLKLKEVFGVEFNRDGIIKLKDINEKVYFKIVVG 167 Query: 154 -----PQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC-FQNPKWRLSVQTHKF 207 ++ + G E + +D F + + C + N Q HK Sbjct: 168 ENLPLEKIENTIHLIKGIGVEELYIHFIDNKFNYSLLDKILDLCYYHNVMAYFIPQVHKL 227 Query: 208 IGIR 211 IG++ Sbjct: 228 IGMK 231 >gi|259419192|ref|ZP_05743109.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Silicibacter sp. TrichCH4B] gi|259345414|gb|EEW57268.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Silicibacter sp. TrichCH4B] Length = 235 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 77/243 (31%), Gaps = 57/243 (23%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 1 MTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDSLHA-VESQ 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + + + + L+GG P +Q PLI G+ A ET G Sbjct: 49 YRHSWAPMDTDAVWAKVHKLSGGQPLTVSLSGGNPAIQDFGPLITKGRAAGYRFACETQG 108 Query: 121 TIEPP--QGIDWICVSPKAGCD-----------------------LKIKGGQELKLVFPQ 155 +I P +D + +SPK +KI E + + Sbjct: 109 SIPRPWFADLDTLVLSPKPPSSGENVDWDAFDRCRAIGAGARQQVMKIVIFDETDYQWAR 168 Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW-------------RLSV 202 + + LQP P ++ T + + W R+ Sbjct: 169 EVHRHHSDLAL-----YLQP-GNPEVDPATPVDLQTLANRLGWLTEKAMADGWFAPRILP 222 Query: 203 QTH 205 Q H Sbjct: 223 QLH 225 >gi|77919241|ref|YP_357056.1| organic radical activating protein [Pelobacter carbinolicus DSM 2380] gi|77545324|gb|ABA88886.1| organic radical activating enzyme [Pelobacter carbinolicus DSM 2380] Length = 253 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 87/250 (34%), Gaps = 59/250 (23%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV------GIQGTK 61 EIF ++QGEGG G VF R +GCNL C +CDTDF Sbjct: 15 EIFSSIQGEGGLVGCRQVFIRLAGCNL-----------DCAYCDTDFAPQDTCRIEDAPG 63 Query: 62 GGRY-------NVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGF 112 G++ ++ +AD++ LTGGEPLL Q+ + L + Sbjct: 64 SGQFRSVTNPVALEVVADILGAWTKRAPGMHHSISLTGGEPLLQGQLLRDWVPVLKEI-L 122 Query: 113 EIAVETNGTI-----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD 167 I +ETNGT ++W+ + K + +L F ++ ++ Sbjct: 123 PIHLETNGTCPDALAPLLPHLEWVSMDVKLASTTGMPTPWKLHRAFLEIAAQAHVWVKAV 182 Query: 168 FER----------------------FSLQPMDGP-----FLEENTNLAISYCFQNPKWRL 200 LQP E L + + K R+ Sbjct: 183 VCESTPAEEMHDLGRLVHQIAPHVTIFLQPATRQGKVDMSAERLLALQTALSRHHGKVRV 242 Query: 201 SVQTHKFIGI 210 QTH F+G+ Sbjct: 243 VPQTHVFLGL 252 >gi|13474824|ref|NP_106394.1| hypothetical protein mll5796 [Mesorhizobium loti MAFF303099] gi|14025580|dbj|BAB52180.1| mll5796 [Mesorhizobium loti MAFF303099] Length = 245 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 15/166 (9%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G VF R GC+ +C +CD+ + + Sbjct: 9 IRVSEIFGPTIQGEGVLIGLPTVFVRTGGCDY-----------RCSWCDSLHAVDRRFRH 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + ++ + L+GG P +Q LI + G+ A+ET G++ Sbjct: 58 D-WEMMSSDAVWQKVIALSSGQPVMVSLSGGNPAIQPLGQLIDRGHGEGYRFALETQGSV 116 Query: 123 E--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 +D + +SPK P+ + Sbjct: 117 SKQWFADLDVLVLSPKPPSSEMTTDWAAFDACLEAAQDKPQTALKL 162 >gi|163754267|ref|ZP_02161390.1| GTPase ObgE [Kordia algicida OT-1] gi|161326481|gb|EDP97807.1| GTPase ObgE [Kordia algicida OT-1] Length = 253 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 51/194 (26%), Positives = 76/194 (39%), Gaps = 39/194 (20%) Query: 1 MKLYSIK------EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF 54 M I EIF ++QGEG + G+ +VF R S CNL C +CDTD+ Sbjct: 1 MTKLKIANLNGKPEIFHSIQGEGKNLGQPSVFIRTSLCNL-----------HCIWCDTDY 49 Query: 55 VG-----------IQGTKGGRYNVDQ-LADLIEEQWI--TGEKEGRYCVLTGGEPL--LQ 98 +Y +D+ + L E+ + + VLTGGEP+ LQ Sbjct: 50 TWNWEKTRFAHVKDSDPLYEKYKMDEMIISLTLEEIYNEVAKSGCKNIVLTGGEPMMQLQ 109 Query: 99 VDVPLIQAL--NKRGFEIAVETNGTIEPPQG----IDWICVSPKAGCDLKIKGGQELKLV 152 L++ + +ETNGT+ P ID VSPK K +E Sbjct: 110 ELSALMKFFNTKATDYFFEIETNGTLLPDATFDALIDQYNVSPKLANSNNPKKLREKPEA 169 Query: 153 FPQVNVSPENYIGF 166 + + + + F Sbjct: 170 YQYFSKNEKAVFKF 183 >gi|20804218|emb|CAD31244.1| HYPOTHETICAL CONSERVED PROTEIN [Mesorhizobium loti R7A] Length = 245 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 15/166 (9%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G VF R GC+ +C +CD+ + + Sbjct: 9 IRVSEIFGPTIQGEGVLIGLPTVFVRTGGCDY-----------RCSWCDSLHAVDRRFRH 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + ++ + L+GG P +Q LI + G+ A+ET G++ Sbjct: 58 D-WEMMSPDAVWQKVIALSGGQPVMVSLSGGNPAIQPLSQLIDRGHGEGYRFALETQGSV 116 Query: 123 E--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 +D + +SPK P+ + Sbjct: 117 SKQWFADLDVLVLSPKPPSSEMTTDWAAFDACLEAAQDKPQMALKL 162 >gi|303247444|ref|ZP_07333716.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ] gi|302491140|gb|EFL51032.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ] Length = 210 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 59/230 (25%), Positives = 89/230 (38%), Gaps = 52/230 (22%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + + EIF ++QGE +AG F R SGCNL C +CDT + Sbjct: 1 MLRVHEIFASIQGESSYAGYPCAFLRLSGCNL-----------DCSWCDTRYAS------ 43 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGT 121 + L + ++ G LTGGEPLL+ L +L G + VETNG+ Sbjct: 44 ASFTAMSLDEARQKLLALGL---PLVELTGGEPLLEPLAPALAASLADAGATVLVETNGS 100 Query: 122 IEPPQGIDWICVSPK--AGCDLKIKG-GQELKLVFPQVN-VSPENYIGF--DFERFSL-- 173 + D + P+ A D+K G G E K + ++ + P + + F L Sbjct: 101 L------DIGVLDPRVIAVMDVKCPGSGMEGKNDYANLDRLRPRDEVKFVLAGREDYLFA 154 Query: 174 ---------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 P+ G LA + RL++Q HK+I Sbjct: 155 RDVVRRVPAGNAVHFSPVAGRLDPA--ELAAWMVADASRARLALQLHKYI 202 >gi|70727187|ref|YP_254103.1| hypothetical protein SH2188 [Staphylococcus haemolyticus JCSC1435] gi|68447913|dbj|BAE05497.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 238 Score = 125 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 16/156 (10%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG GR +F R +GC+ +C +CD+ F G+ Sbjct: 5 IPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAK 52 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121 + ++ + G + ++GG P L++ L+ ++ A+ET G+ Sbjct: 53 EDIKLMTAEEIYNQLKKIGGDRFDHVTISGGNPALIKGIQDLVDLFEEKQIYTALETQGS 112 Query: 122 IEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155 P + I+ + +SPK L V Q Sbjct: 113 KFQPWMRQINDLTISPKPPSSNMKPNIDILDSVIEQ 148 >gi|313683431|ref|YP_004061169.1| radical sam domain protein [Sulfuricurvum kujiense DSM 16994] gi|313156291|gb|ADR34969.1| Radical SAM domain protein [Sulfuricurvum kujiense DSM 16994] Length = 252 Score = 125 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 9/131 (6%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS----GREQDRLSAQCRFCDTDFVGI- 57 + + E F ++QGEG + G ++F RF GCNL RE ++ CDT + Sbjct: 1 MLYLVEHFYSVQGEGKYTGVPSLFFRFGGCNLKCEGFGCRESAPDGSEVLGCDTVYAVDR 60 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFE 113 +G +++L LI VLTGGEPL+ + P I+ L G Sbjct: 61 KGFGELWMEIEELQSLIWIMNGYRLPPHVDVVLTGGEPLIYANEPIFVEFIEYLIAHGHR 120 Query: 114 IAVETNGTIEP 124 + ETN TI P Sbjct: 121 VTFETNATIAP 131 >gi|154175412|ref|YP_001407498.1| FO synthase subunit 2 [Campylobacter curvus 525.92] gi|153793229|gb|EAU01215.2| FO synthase subunit 2 2 (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 2 2) [Campylobacter curvus 525.92] Length = 256 Score = 125 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 48/129 (37%), Positives = 66/129 (51%), Gaps = 11/129 (8%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS-----GREQDRLSAQCRFCDTDFVGIQG- 59 + E FL++QGEG + GR+AVF RF GCNL ++ CD+ +G Sbjct: 11 LVESFLSVQGEGAYQGRLAVFLRFFGCNLNCIGFDVKTRSNKTGEILIGCDSARAVFKGH 70 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIA 115 K RY+ D++ L++ G K VLTGGEPL+ L+Q L GF++ Sbjct: 71 FKSKRYSSDEILSLVK-NICKGLKTRPIVVLTGGEPLIHHKNENFINLVQNLLNLGFDVH 129 Query: 116 VETNGTIEP 124 ETNGTIE Sbjct: 130 FETNGTIEV 138 >gi|45659043|ref|YP_003129.1| Fe-S oxidoreductase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602289|gb|AAS71766.1| Fe-S oxidoreductase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 243 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 95/239 (39%), Gaps = 50/239 (20%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 S+ EI+L+L GEG G +F R +GC+L G R +CDT + G Sbjct: 13 SVHEIYLSLSGEGISTGIPTIFVRMAGCSLRCGMTVGRKL----WCDTPYALSPKA-GEE 67 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI---------- 114 +V+Q+ D I+E + +LTGGEPL + L F I Sbjct: 68 MSVNQVLDKIQELSAVNIQ----ILLTGGEPLEGRNREFSITLGNEIFRIRNSSGFYPRP 123 Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKG-GQELKLVFPQVNV-----SPENYIGF-- 166 VETNG E +G+D D K+ G G E ++ + + +P + I F Sbjct: 124 RVETNGA-ESIEGMDQFVF----TLDYKLPGSGMEDRMNLKNLEIYKERKNPLDEIKFVI 178 Query: 167 ----DFER-------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 DFER P+ G E I Y RLS+QTHK+I Sbjct: 179 RDKNDFERCLEIIEKHALVGNLLASPVQGELSPEILAEWIKYSL-GSGLRLSIQTHKYI 236 >gi|305432704|ref|ZP_07401864.1| radical SAM domain protein [Campylobacter coli JV20] gi|304444213|gb|EFM36866.1| radical SAM domain protein [Campylobacter coli JV20] Length = 247 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 17/181 (9%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTKG 62 + E FL++QGEG ++G++A+F RF+GCN G + + + CDT Sbjct: 3 LVESFLSIQGEGKYSGKLAIFMRFAGCNFNCSGFGVKLIKNGKTLKGCDTIRAVFTKEFN 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118 Y + ++L + + V+TGGEPL+ + P IQAL K FE+ E+ Sbjct: 63 EEYEILNASELFKRVLDLKKDFNPIVVITGGEPLIHHENPEFIDFIQALLKNNFEVHFES 122 Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 NG+IE P +S K G+E +L F + ++Y F +F Sbjct: 123 NGSIELDFEKYPFYKECVFALSVKLQNSGM---GKEKRLNFNALK-GFKHYAKDSFYKFV 178 Query: 173 L 173 L Sbjct: 179 L 179 >gi|315658944|ref|ZP_07911811.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus lugdunensis M23590] gi|315496068|gb|EFU84396.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus lugdunensis M23590] Length = 238 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 18/175 (10%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG GR +F R +GC+ +C +CD+ F G+ Sbjct: 5 IPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAK 52 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121 + + ++ E+ G + ++GG P L++ L+ A+ET G+ Sbjct: 53 DQIQLMSATEIYEKLIEIGGDCFDHVTISGGNPALIKGIQDLVDLFETEHIATALETQGS 112 Query: 122 IEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFS 172 P I+ + +SPK + L V Q + FD E ++ Sbjct: 113 KFQPWMTQINDLTISPKPPSSSMTPNLEVLDQVIAQCVPQSLNLKVVVFDDEDYA 167 >gi|163742266|ref|ZP_02149654.1| organic-radical-activating protein [Phaeobacter gallaeciensis 2.10] gi|161384596|gb|EDQ08977.1| organic-radical-activating protein [Phaeobacter gallaeciensis 2.10] Length = 246 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 57/142 (40%), Gaps = 15/142 (10%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 I EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 12 TTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDSLHA-VDSR 59 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + ++ +E + L+GG P +Q PLI + G+ A ET G Sbjct: 60 YRDTWAPMATDEVWQEVTRLSGGQPLTVSLSGGNPAIQNFAPLIAQGKEAGYRFACETQG 119 Query: 121 TIEPP--QGIDWICVSPKAGCD 140 +I P +D + +SPK Sbjct: 120 SISQPWFAALDTLVLSPKPPSS 141 >gi|294828448|ref|NP_714217.2| organic radical activating enzyme [Leptospira interrogans serovar Lai str. 56601] gi|293386302|gb|AAN51235.2| organic radical activating enzyme [Leptospira interrogans serovar Lai str. 56601] Length = 237 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 95/239 (39%), Gaps = 50/239 (20%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 S+ EI+L+L GEG G +F R +GC+L G R +CDT + G Sbjct: 7 SVHEIYLSLSGEGISTGIPTIFVRMAGCSLRCGMTVGRKL----WCDTPYALSPKA-GEE 61 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI---------- 114 +V+Q+ D I+E + +LTGGEPL + L F I Sbjct: 62 MSVNQVLDKIQELSAVNIQ----ILLTGGEPLEGRNREFSITLGNEIFRIRNSSGFYPRP 117 Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKG-GQELKLVFPQVNV-----SPENYIGF-- 166 VETNG E +G+D D K+ G G E ++ + + +P + I F Sbjct: 118 RVETNGA-ESIEGMDQFVF----TLDYKLPGSGMEDRMNLKNLEIYKERKNPLDEIKFVI 172 Query: 167 ----DFER-------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 DFER P+ G E I Y RLS+QTHK+I Sbjct: 173 RDKNDFERCLEIIEKHALVGNLLASPVQGELSPEILAEWIKYSL-GSGLRLSIQTHKYI 230 >gi|290580634|ref|YP_003485026.1| hypothetical protein SmuNN2025_1108 [Streptococcus mutans NN2025] gi|254997533|dbj|BAH88134.1| hypothetical protein [Streptococcus mutans NN2025] Length = 238 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 65/159 (40%), Gaps = 21/159 (13%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T QGEG G+ +F R GC+ C +CD+ F K Sbjct: 9 LPVLEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEKP 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNG 120 DQ+ + +++ Y L+GG P L L++ L KR +AVET G Sbjct: 58 TMMTSDQIIEALDKLGTYD-----YVTLSGGNPCLLAANMAQLVRKLKKRQVTLAVETQG 112 Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 + E + ID + +SPK Q L + ++ Sbjct: 113 SRWQEWLKAIDQVTLSPKPPSSKMKVNLQTLDFIVSNLD 151 >gi|24379363|ref|NP_721318.1| hypothetical protein SMU.916c [Streptococcus mutans UA159] gi|24377290|gb|AAN58624.1|AE014932_7 conserved hypothetical protein [Streptococcus mutans UA159] Length = 243 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 65/159 (40%), Gaps = 21/159 (13%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T QGEG G+ +F R GC+ C +CD+ F K Sbjct: 14 LPVLEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEKP 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNG 120 DQ+ + +++ Y L+GG P L L++ L KR +AVET G Sbjct: 63 TMMTSDQIIEALDKLGTYD-----YVTLSGGNPCLLAANMAQLVRKLKKRQVTLAVETQG 117 Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 + E + ID + +SPK Q L + ++ Sbjct: 118 SRWQEWLKAIDQVTLSPKPPSSKMKVNLQTLDFIVSNLD 156 >gi|119386888|ref|YP_917943.1| radical SAM domain-containing protein [Paracoccus denitrificans PD1222] gi|119377483|gb|ABL72247.1| preQ(0) biosynthesis protein QueE [Paracoccus denitrificans PD1222] Length = 235 Score = 124 bits (313), Expect = 6e-27, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 72/195 (36%), Gaps = 33/195 (16%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 I EIF T+QGEG G VF R GC+ +C +CD+ ++ + Sbjct: 1 MTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCVWCDSLHA-VESS 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + + E + L+GG P +Q PLI ++G+ A ET G Sbjct: 49 HRHEWRPMSAEAVWAEVRRLSGGQPLTVSLSGGNPAIQDFTPLIALGREQGYRFACETQG 108 Query: 121 TIEPP--QGIDWICVSPKAGCDLKIKGGQE---------------LKLV-FPQVNVSPEN 162 ++ P + + +SPK ++ LK+V F QV++ Sbjct: 109 SVAQPWFAELSTLVLSPKPPSSGQVVDWDAFDRCLKAGEGAGQRVLKIVIFDQVDLDWAR 168 Query: 163 YIGFDFE--RFSLQP 175 + LQP Sbjct: 169 EVAARHPGLPLYLQP 183 >gi|320530179|ref|ZP_08031249.1| radical SAM domain protein [Selenomonas artemidis F0399] gi|320137612|gb|EFW29524.1| radical SAM domain protein [Selenomonas artemidis F0399] Length = 243 Score = 124 bits (313), Expect = 6e-27, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 96/250 (38%), Gaps = 65/250 (26%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-FVGIQGTKGG 63 +I EIF ++QGEG + G VF R GCNL C +CDT+ +G T Sbjct: 4 NIIEIFSSIQGEGKYVGCRQVFVRLEGCNL-----------DCTYCDTENEIGRHPTCMV 52 Query: 64 RY--------------NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 +++ +A L+ + + G+ +TGGEPLL VP I+AL + Sbjct: 53 EMPAGSHELHSYANPLSIETVAALVAQ--VAGDVPHHSLSVTGGEPLLH--VPFIRALKE 108 Query: 110 R-GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG------------GQEL---KLVF 153 R I +ETNGT+ CVS D+K+ G E+ K V+ Sbjct: 109 RVPLPIFLETNGTLHDALARCIDCVS-YISMDIKLPGVLLHPVWDAHARFLEIARTKDVY 167 Query: 154 PQVNVSPENYIG------------FDFERFSLQPMD----GPFLEENTNLAISYC-FQN- 195 +V V+ E LQP+ LA+ + Sbjct: 168 VKVVVAAETREDEVRTAARMVAETAPDVLLILQPVTPYGGCTAPTPARLLALQQIALVHV 227 Query: 196 PKWRLSVQTH 205 P R+ QTH Sbjct: 228 PDVRVIPQTH 237 >gi|260892494|ref|YP_003238591.1| Radical SAM domain protein [Ammonifex degensii KC4] gi|260864635|gb|ACX51741.1| Radical SAM domain protein [Ammonifex degensii KC4] Length = 251 Score = 124 bits (313), Expect = 6e-27, Method: Composition-based stats. Identities = 62/254 (24%), Positives = 91/254 (35%), Gaps = 65/254 (25%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-----VGIQG 59 ++EIF ++QGEG + G +F RF+GCNL CR+CDT ++ Sbjct: 12 PLREIFSSVQGEGPYVGVRHLFVRFAGCNLT-----------CRYCDTPRDIPATCRVEV 60 Query: 60 TKGGRY--------NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNK 109 G ++ +++ L+ LTGGEPLL L+ AL + Sbjct: 61 VAGRQHFFHLPNPLTPEEVVLLVSNLLRQLRHGA--VALTGGEPLLYPAFLRELLPALRQ 118 Query: 110 RGFEIAVETNGTIE--PPQGIDWICVSPKAGCDLKIKGGQELK----------------- 150 G + +ETNGT+ + D + V DLK+ LK Sbjct: 119 IGCRVYLETNGTLPYALEEVADLVDV---VAMDLKLPSSTGLKPYWSEHEEFLAKLKGKE 175 Query: 151 -----LVFPQVNVSPENYIGFDFER----FSLQPMDGP---FLEENTNLAI--SYCF-QN 195 +V Q G E+ LQP+ F L + + Sbjct: 176 VILKAVVSRQATREEVERAGELAEKAGAVLVLQPVTTKNPNFRPSGMRLLEMQEWALGKT 235 Query: 196 PKWRLSVQTHKFIG 209 RL Q HKF G Sbjct: 236 SDVRLIPQVHKFCG 249 >gi|297584920|ref|YP_003700700.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus selenitireducens MLS10] gi|297143377|gb|ADI00135.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Bacillus selenitireducens MLS10] Length = 243 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 92/225 (40%), Gaps = 43/225 (19%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + + EIF T+QGEG AGR +F R +GC+ C +CD+ F Sbjct: 3 ETIPVLEIFGPTIQGEGMVAGRKTMFVRTAGCDY-----------ACSWCDSAFTWDGSA 51 Query: 61 KGG--RYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVE 117 K + N D + + E+ E + ++GG P LL+ I L ++ ++A+E Sbjct: 52 KDEIVQMNKDAIWQALNEE---AEGLFSHVTISGGNPALLKNLGSFITLLKEKAIDVALE 108 Query: 118 TNGTI--EPPQGIDWICVSPKAGC----------DLKIKGGQE--------LKLV-FPQV 156 T G++ + ID + +SPK D + +E LK+V F + Sbjct: 109 TQGSVWQDWFTTIDDLTISPKPPSSRMETDFGVLDDIMTRLREAGRSSQVSLKVVIFDEE 168 Query: 157 NVSPENYIGFDFER--FSLQP-MDGPFLEENTNLAISYCFQNPKW 198 +++ + + F LQ D +E+ L + +W Sbjct: 169 DLAYARRVKTRYPDVPFYLQVGNDDTVTDEDKTL-RDHLMDRYEW 212 >gi|86136125|ref|ZP_01054704.1| radical SAM domain protein [Roseobacter sp. MED193] gi|85826999|gb|EAQ47195.1| radical SAM domain protein [Roseobacter sp. MED193] Length = 206 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 53/142 (37%), Gaps = 15/142 (10%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 I EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 1 MTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCDF-----------RCNWCDSLHA-VDSE 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + + + L+GG P +Q PLI G+ A ET G Sbjct: 49 YRHSWAPMTAEAVWDRVRQLSGDRPLTVSLSGGNPAIQDFGPLIAMGRAAGYRFACETQG 108 Query: 121 TIEPP--QGIDWICVSPKAGCD 140 +I P +D + +SPK Sbjct: 109 SIARPWFADLDTLVLSPKPPSS 130 >gi|11498053|ref|NP_069277.1| hypothetical protein AF0441 [Archaeoglobus fulgidus DSM 4304] gi|2650186|gb|AAB90793.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 225 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 57/241 (23%), Positives = 89/241 (36%), Gaps = 53/241 (21%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 ++ EIF ++QGEG + G +F RF+GCNL C +CDT Sbjct: 4 NLIEIFESIQGEGFYIGVRQLFVRFAGCNL-----------NCYYCDTPKTSENCLD--L 50 Query: 65 YNVDQLADLIEEQWITGEKEG---RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 L + + +++ G + TGGEP+LQ I +L+K +E+N T Sbjct: 51 TANRTLKNPVSAEYVQGRIDSSKVHSVCFTGGEPMLQA--EFIASLSKT-HPFYLESNMT 107 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGG-----QEL---------------------KLVFPQ 155 + C DLK++ E+ K+V P Sbjct: 108 LPEKAKKLKFC--DYVAGDLKVREAGLKNYDEVFQKTVKCFKVLRNTRRRKTFCKIVLPD 165 Query: 156 VNVSPEN-----YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 + E I F LQP+ G +E+ L R+ Q HK++G+ Sbjct: 166 KFDADEVLNSAYEIKNYVFGFVLQPVFGSRVEKILKLQ-KRMIDFADTRVIPQVHKYLGV 224 Query: 211 R 211 R Sbjct: 225 R 225 >gi|15679238|ref|NP_276355.1| coenzyme PQQ synthesis protein III [Methanothermobacter thermautotrophicus str. Delta H] gi|2622338|gb|AAB85716.1| coenzyme PQQ synthesis protein III [Methanothermobacter thermautotrophicus str. Delta H] Length = 247 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 16/119 (13%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I E+F ++QGEG GR +F RF+GCNL C +CDT + G Sbjct: 7 PIVEVFSSIQGEGLLVGRRQIFVRFAGCNL-----------NCSYCDTP-ESRDPSAGRL 54 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 + +L ++IE + +TGGEPLL D + + L + +ETNG++ Sbjct: 55 FTAPELTEIIEGLI---TPDFHSISITGGEPLLYPDF-ITELLEESPHRTLLETNGSLP 109 >gi|163738317|ref|ZP_02145732.1| Radical SAM [Phaeobacter gallaeciensis BS107] gi|161388238|gb|EDQ12592.1| Radical SAM [Phaeobacter gallaeciensis BS107] Length = 265 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 57/142 (40%), Gaps = 15/142 (10%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 I EIF T+QGEG G VF R GC+ +C +CD+ + Sbjct: 31 TTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDSLHA-VDSR 78 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + ++ +E + L+GG P +Q PLI + G+ A ET G Sbjct: 79 YRDTWVPMATDEVWQEVTRLSGGQPLTVSLSGGNPAIQNFAPLIAQGKEAGYRFACETQG 138 Query: 121 TIEPP--QGIDWICVSPKAGCD 140 +I P +D + +SPK Sbjct: 139 SISQPWFAQLDTLVLSPKPPSS 160 >gi|289551435|ref|YP_003472339.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus lugdunensis HKU09-01] gi|289180966|gb|ADC88211.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus lugdunensis HKU09-01] Length = 238 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 18/175 (10%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG GR +F R +GC+ +C +CD+ F G+ Sbjct: 5 IPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSVFTW-DGSAK 52 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121 + + ++ E+ G + ++GG P L++ L+ A+ET G+ Sbjct: 53 DQIQLMSATEIYEKLIEIGGDCFDHVTISGGNPALIKGIQDLVDLFETEHIATALETQGS 112 Query: 122 IEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFS 172 P I+ + +SPK + L V Q + FD E ++ Sbjct: 113 KFQPWMTQINDLTISPKPPSSSMTPNLEVLDQVIAQCVPQSLNLKVVVFDDEDYA 167 >gi|291443188|ref|ZP_06582578.1| radical SAM domain-containing protein [Streptomyces roseosporus NRRL 15998] gi|291346135|gb|EFE73039.1| radical SAM domain-containing protein [Streptomyces roseosporus NRRL 15998] Length = 241 Score = 123 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 90/239 (37%), Gaps = 57/239 (23%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGG 63 + EIF T+QGEG AGR VF R GCNL C +CDT + +GT Sbjct: 11 VNEIFGPTVQGEGPSAGRQCVFLRLGGCNL-----------SCHWCDTPYTWDWKGTSDE 59 Query: 64 RYNVD--------QLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFE 113 + D +++EE G V++GGEPL Q P+++ L + G Sbjct: 60 KTAFDPRKELHNRDAGEVVEELLALGTG---LVVISGGEPLSQQRRLRPVLKGLLEAGVT 116 Query: 114 IAVETNGTIEPPQGIDWIC------VSPKAGCD-------------LKIKGGQELKLVFP 154 + ETNGT+ P I I VSPK K+ ++ F Sbjct: 117 VEFETNGTVVPDDEI--ITPGVRFNVSPKLAHAGDPASKRIVPAALTKLAQTTDVAFKFV 174 Query: 155 QVNVSPENYIGFDFERFSLQPM----DGPFLEENTN----LAISYCFQNPKWRLSVQTH 205 + +G F + P+ +G + + LA W LS + H Sbjct: 175 CRTTDDLDEVGTLQADFGISPIWIMPEGKNVAHISQHLSSLADEVV--RRGWNLSTRLH 231 >gi|291547693|emb|CBL20801.1| Organic radical activating enzymes [Ruminococcus sp. SR1/5] Length = 149 Score = 123 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 19/128 (14%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M Y + E F+++ GEG AG +A F RF GCNL QC +CDT + G Sbjct: 1 MSTYQVVEKFVSINGEGRRAGELAAFIRFKGCNL-----------QCSYCDTSWANEPGC 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQA-LNKRGFEIAVET 118 + R +++ I E + + LTGGEPLL+ LI+A L + +ET Sbjct: 50 ESERLTEEEILSWIRETGV------KNVTLTGGEPLLRKGMEELIEAILEDPSQRVEIET 103 Query: 119 NGTIEPPQ 126 NG+++ Sbjct: 104 NGSVDLKP 111 >gi|57505796|ref|ZP_00371721.1| radical SAM domain protein protein [Campylobacter upsaliensis RM3195] gi|57015826|gb|EAL52615.1| radical SAM domain protein protein [Campylobacter upsaliensis RM3195] Length = 247 Score = 123 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 7/127 (5%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTK 61 + E FL++QGEG AG +A+F RF+GCN G ++ + + CDT Sbjct: 2 KVVESFLSIQGEGKFAGLLAIFVRFAGCNFNCLGFGVKKQKEGRELVGCDTLRAVFTKEY 61 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ----VDVPLIQALNKRGFEIAVE 117 Y +L + V+TGGEPLL + I+ L + FE+ E Sbjct: 62 QNTYENLNAKELFLRVLKMAKDLKPIIVITGGEPLLHHKKSEFLKFIKLLLEAKFEVHFE 121 Query: 118 TNGTIEP 124 TN +I Sbjct: 122 TNASIRV 128 >gi|239939759|ref|ZP_04691696.1| radical SAM family protein [Streptomyces roseosporus NRRL 15998] gi|239986242|ref|ZP_04706906.1| radical SAM family protein [Streptomyces roseosporus NRRL 11379] Length = 235 Score = 123 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 90/239 (37%), Gaps = 57/239 (23%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGG 63 + EIF T+QGEG AGR VF R GCNL C +CDT + +GT Sbjct: 5 VNEIFGPTVQGEGPSAGRQCVFLRLGGCNL-----------SCHWCDTPYTWDWKGTSDE 53 Query: 64 RYNVD--------QLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFE 113 + D +++EE G V++GGEPL Q P+++ L + G Sbjct: 54 KTAFDPRKELHNRDAGEVVEELLALGTG---LVVISGGEPLSQQRRLRPVLKGLLEAGVT 110 Query: 114 IAVETNGTIEPPQGIDWIC------VSPKAGCD-------------LKIKGGQELKLVFP 154 + ETNGT+ P I I VSPK K+ ++ F Sbjct: 111 VEFETNGTVVPDDEI--ITPGVRFNVSPKLAHAGDPASKRIVPAALTKLAQTTDVAFKFV 168 Query: 155 QVNVSPENYIGFDFERFSLQPM----DGPFLEENTN----LAISYCFQNPKWRLSVQTH 205 + +G F + P+ +G + + LA W LS + H Sbjct: 169 CRTTDDLDEVGTLQADFGISPIWIMPEGKNVAHISQHLSSLADEVV--RRGWNLSTRLH 225 >gi|260430571|ref|ZP_05784544.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Citreicella sp. SE45] gi|260418600|gb|EEX11857.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Citreicella sp. SE45] Length = 235 Score = 123 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 16/143 (11%) Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M L I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 1 MSL-RIAEIFGPTIQGEGALIGEPTVFVRTGGCDY-----------RCSWCDSLHA-VES 47 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 + + + +E + L+GG P +Q P+I G+ A ET Sbjct: 48 RYRDTWAAMSDSAVWDEVLRLSGGQPLTVSLSGGNPAIQDFAPVIARGRAAGYRFACETQ 107 Query: 120 GTIEPP--QGIDWICVSPKAGCD 140 G++ P +D + +SPK Sbjct: 108 GSVARPWFAELDTLVLSPKPPSS 130 >gi|327198318|ref|YP_004306892.1| QueE [Streptococcus phage Dp-1] gi|314912620|gb|ADT64011.1| QueE [Streptococcus phage Dp-1] Length = 264 Score = 123 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 18/166 (10%) Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF T+QGEG G+ +F R GC+ C +CD+ F T+ Sbjct: 24 PIMEIFGPTIQGEGMVIGQKTIFIRTGGCDY-----------HCNWCDSAFTWNGTTEPE 72 Query: 64 RYNVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETN 119 + A I + GE+ + LTGG P L + +I L + GF+ +ET Sbjct: 73 YITGKEAASRILKLAFNDKGEQICNHVTLTGGNPALINEPMAKMISILKEHGFKFGLETQ 132 Query: 120 GTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY 163 GT E + + I +SPK + L+ + ++N ++ Sbjct: 133 GTRFQEWFKEVSDITISPKPPSSGMRTNMKILEAIVDRMNDENLDW 178 >gi|302531820|ref|ZP_07284162.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptomyces sp. AA4] gi|302440715|gb|EFL12531.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptomyces sp. AA4] Length = 237 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 49/144 (34%), Positives = 66/144 (45%), Gaps = 25/144 (17%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + E F T+QGEG GR AVF R CNL C+ CDT + + R Sbjct: 12 VAERFGPTVQGEGPSIGRRAVFIRLMNCNLT-----------CKNCDTPYTWDR----TR 56 Query: 65 YNVD---QLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119 +++D +A + + + V+TGGEPL+Q L Q L G E+ VETN Sbjct: 57 FDLDAEGTVASISDLLAWVTVQSVDLVVITGGEPLMQQRSLTALAQGLADAGLEVEVETN 116 Query: 120 GTI-EPPQGIDWIC---VSPKAGC 139 GTI P + W+ VSPK Sbjct: 117 GTIVPAPDLLAWVTRFNVSPKLSS 140 >gi|289192393|ref|YP_003458334.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22] gi|288938843|gb|ADC69598.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22] Length = 243 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 59/258 (22%), Positives = 93/258 (36%), Gaps = 72/258 (27%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD----FVGIQGTK 61 I+EIF ++ GEG + GR +F RF+GC L C +CD + F ++ T Sbjct: 2 IREIFSSIMGEGKYIGRRFIFVRFAGCPL-----------NCVYCDEESKGYFNRVEKTP 50 Query: 62 G-GRYNVDQ---LADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115 G G + Q + D+I + TGGEPLL + L +G+ Sbjct: 51 GSGEFETLQKIDIEDIINAIDKLKTPDLFAVSFTGGEPLLYHKQIKEISDILKDKGYRTF 110 Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKG--------------GQELK----------- 150 +E+NG P+ + + + A D+K+K ELK Sbjct: 111 LESNG--MFPEKVFYFDI---ASIDIKLKEHFEYIKDDDYKKLYKNELKTIKKLYNLNSD 165 Query: 151 -----LVFPQVNVSPENYIGFDFERF-----SLQPM---------DGPFLEENTNLAISY 191 ++ + V I D +QP+ L E Y Sbjct: 166 VYAKVVIMEETKVDDVKIIAKDLSEIGNITLCIQPVTPHGNIKSPSQKKLFEIMEACGEY 225 Query: 192 CFQNPKWRLSVQTHKFIG 209 N L++Q HK++G Sbjct: 226 LKDNVM--LTIQMHKYLG 241 >gi|228995355|ref|ZP_04155040.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus pseudomycoides DSM 12442] gi|228764397|gb|EEM13260.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus pseudomycoides DSM 12442] Length = 232 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 21/173 (12%) Query: 7 KEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ + Sbjct: 1 MEIFGPTIQGEGMVIGQKTMFIRTAGCDY-----------SCSWCDSAFTW-DGSTKEQI 48 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI-- 122 ++ E G + + ++GG P LL+ L+ L + G A+ET G+ Sbjct: 49 RQMAPEEIWNELVGIGGENFSHVTISGGNPVLLKNIQFLLTVLKENGIRTAIETQGSKWQ 108 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170 E ID + +SPK L V ++ + + +DFE Sbjct: 109 EWLLQIDEVTISPKPPSSKMKTDFTMLDSVIHKLERKDFSLKVVVFEDYDFEY 161 >gi|158314658|ref|YP_001507166.1| radical SAM domain-containing protein [Frankia sp. EAN1pec] gi|158110063|gb|ABW12260.1| Radical SAM domain protein [Frankia sp. EAN1pec] Length = 243 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 92/235 (39%), Gaps = 56/235 (23%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + E F T QGEG AG+ A+F R S CNL C +CD + R Sbjct: 20 VVERFGPTFQGEGPTAGQQALFLRLSACNL-----------SCAWCDEPHTWDR----NR 64 Query: 65 YNVDQLADLIEEQWITG---EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119 ++VD ++ + ++ + G + V+TGGEPLLQ PL+ AL + G ++ +ETN Sbjct: 65 FDVDAHSERLSQRTLLGWALDSPVTRVVVTGGEPLLQQAALFPLVAALAQAGRQVEIETN 124 Query: 120 GTIEPPQGIDWI----CVSPKAGCDLKIKGGQELKLVFPQVNVSPE-------------- 161 GT+ P + + VSPK ++ + P + Sbjct: 125 GTVAPTAEMVEVVERFTVSPKLSGS----RVAAVRRIVPAALTAFAGCGKAVFKFVISAD 180 Query: 162 ---NYIGFDFERFSLQPM--------DGPFLEENTNLAISYCFQNPKWRLSVQTH 205 + I RF L P+ + L LA + W LS + H Sbjct: 181 GEIDEIAELEGRFGLSPVWAMPEGTDEPSVLAGMRRLA-EIALER-GWNLSPRLH 233 >gi|152991808|ref|YP_001357529.1| hypothetical protein SUN_0212 [Sulfurovum sp. NBC37-1] gi|151423669|dbj|BAF71172.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 252 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 55/185 (29%), Positives = 77/185 (41%), Gaps = 21/185 (11%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQG 59 ++ + E F ++QGEG +AG + F R GCNL G + CDT F Sbjct: 1 MFYLTEQFFSIQGEGKYAGVPSYFLRTGGCNLSCPGFGATYEVDGEIRYGCDTYFAVDSA 60 Query: 60 TKGGRYNVDQ---LADLIEEQWITGEKEGRYCVLTGGEPLLQVDV----PLIQALNKRGF 112 VD L D ++E++ V+TGGEPL+ ++ L RG Sbjct: 61 YAKSWKKVDDSRILVDRLQEEFTQIGY-APDVVITGGEPLMYHSDSVFYEVVSWLVDRGV 119 Query: 113 EIAVETNGTIEPPQGIDWICVSPKAGC----DLKIKGGQEL--KLVFPQVNVSPENYIGF 166 I ETNGTIE ID+ C LK+ E K V PQ + ++Y Sbjct: 120 RITFETNGTIE----IDFDAFPAYKACVFALSLKLANSGEPASKRVIPQALKNLQSYSKE 175 Query: 167 DFERF 171 F +F Sbjct: 176 TFLKF 180 >gi|154149121|ref|YP_001405929.1| radical SAM domain-containing protein [Campylobacter hominis ATCC BAA-381] gi|153805130|gb|ABS52137.1| radical SAM domain protein [Campylobacter hominis ATCC BAA-381] Length = 247 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 10/131 (7%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSG-----REQDRLSAQCRFCDTDFVGI 57 + S+ E F ++QGEG AGR+AVF RF+GCNL + + R CDT + Sbjct: 1 MLSLVESFASIQGEGKFAGRLAVFFRFAGCNLNCAGFNCELKSPKTGEILRGCDTIRA-V 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL----IQALNKRGFE 113 + + ++ L+++ + V+TGGEPLL PL I + KR FE Sbjct: 60 KTAHFDYEKISTVSQLLDKIGTNFKNSLPIIVITGGEPLLNYANPLFYEFIDEILKRNFE 119 Query: 114 IAVETNGTIEP 124 + ETNGTI Sbjct: 120 VHFETNGTIFV 130 >gi|157165265|ref|YP_001466044.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Campylobacter concisus 13826] gi|112801208|gb|EAT98552.1| radical SAM domain protein [Campylobacter concisus 13826] Length = 251 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 61/211 (28%), Positives = 89/211 (42%), Gaps = 20/211 (9%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS-----GREQDRLSAQCRFCDTDFVG 56 K + E FL++QGEG + GR+AVF RF GCNL + + CD+ Sbjct: 3 KELELVEAFLSIQGEGAYQGRLAVFLRFLGCNLNCSGFGVKTRSLKTGEELLGCDSIRAV 62 Query: 57 IQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRG 111 +G RY+ D++ L++ G ++ VLTGGEPL+ L++ L Sbjct: 63 FKGHFHHKRYSTDEILSLVD-GLCKGLEQKPIIVLTGGEPLIWHQNENFINLVRNLL-IN 120 Query: 112 FEIAVETNGTIEPPQGID----WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD 167 +E+ ETNGTI D + G L G E K + ++ ++ Sbjct: 121 YEVHFETNGTILV--DFDKFEIYKNCHFALGVKLANSGVSEQKRINLDAILAIKDNAKSS 178 Query: 168 FERFSLQPMDGPFLEENTNLAISYCFQNPKW 198 F +F L D LEE L I P W Sbjct: 179 FLKFVLSHFDKSELEEI--LYIKNRVNLPVW 207 >gi|152991323|ref|YP_001357045.1| hypothetical protein NIS_1581 [Nitratiruptor sp. SB155-2] gi|151423184|dbj|BAF70688.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 252 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 49/212 (23%), Positives = 80/212 (37%), Gaps = 25/212 (11%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSG--REQDRLSAQCRFCDTDFVG---- 56 + + E F ++QGEG G +VF RF GCNL E CD+ Sbjct: 1 MLYLVEDFYSIQGEGKFIGTPSVFFRFGGCNLKCPSFGEYFIQGRIVHGCDSIRAVNREL 60 Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGF 112 Q D+L +++ + + V+TGGEPL+ + P ++ L + G+ Sbjct: 61 FQSKWKEIGTKDELIEILHSH-VEYLDFKPHIVITGGEPLIYWNDPVFYGFLEYLVEEGY 119 Query: 113 EIAVETNGTIEP-----PQGIDWICVSPKAGCDLKIKGGQEL--KLVFPQVNVSPENYIG 165 + +ETN TI P D I +K+ E K V + + G Sbjct: 120 IVTIETNATIVIDFEKYPAYKDVI-----FAMAVKLANSGEKYEKRVNKKAIEAIAVNTG 174 Query: 166 FDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197 + F +F+L G + + P+ Sbjct: 175 YSFFKFTLD--RGSVQMRAYEEIVDIVGEYPE 204 >gi|163746924|ref|ZP_02154281.1| Radical SAM [Oceanibulbus indolifex HEL-45] gi|161380038|gb|EDQ04450.1| Radical SAM [Oceanibulbus indolifex HEL-45] Length = 235 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 78/243 (32%), Gaps = 57/243 (23%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 I EIF T+QGEG G VF R GC+ +C +CD+ ++ Sbjct: 1 MTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDSLHA-VESQ 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + D+ + + L+GG P +Q PLI+ + A ET G Sbjct: 49 YRHTWAPMSSEDVWRKVRKLSGGQPLTVSLSGGNPAIQDFGPLIKMGKAADYRFACETQG 108 Query: 121 TIEPP--QGIDWICVSPKAGCD-----------------------LKIKGGQELKLVFPQ 155 +I P +D + +SPK +KI E+ + + Sbjct: 109 SIARPWFADLDTLVLSPKPPSSGEDVDWDAFDACRTIGAKARQQVMKIVIFDEIDYQWAR 168 Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW-------------RLSV 202 + I LQP P ++ T + W R+ Sbjct: 169 EVHAHHLDIPL-----YLQP-GNPEVDPATPVDPQALADRLGWLTEMAMADSWFAPRILP 222 Query: 203 QTH 205 Q H Sbjct: 223 QLH 225 >gi|78043751|ref|YP_359801.1| radical SAM domain-containing protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995866|gb|ABB14765.1| radical SAM domain protein [Carboxydothermus hydrogenoformans Z-2901] Length = 238 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 66/255 (25%), Positives = 101/255 (39%), Gaps = 63/255 (24%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD--------F 54 + +I EIF +LQGEG +AG +F RFSGCNL C +CDT+ F Sbjct: 1 MANIVEIFPSLQGEGLYAGVSTLFIRFSGCNL-----------NCSYCDTEDAREKRERF 49 Query: 55 VGIQGTKG-----GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 + ++L +++ E + LTGGEPLL L + L K Sbjct: 50 TVTKEDGSLLEFLNPVTPEKLVEILRENYDFTYFPQLA--LTGGEPLLHASF-LKEFLPK 106 Query: 110 RGF--EIAVETNGTIE-----PPQGIDWICVSPKA-------GCDLKIKGGQEL--KLVF 153 + E+ +ETNGT+ +D I K L + QE K V+ Sbjct: 107 LSYPGEVLLETNGTLPDKLNEVLNSVDIISQDFKLKPFIAEDCFTLHREFLQEASRKKVY 166 Query: 154 PQVNVSPE----------NYIGFDFERF--SLQPM-----DGPFLEENTNLAISYCFQNP 196 ++ +SPE N I + LQP+ FL + +A+ + Sbjct: 167 VKMVISPEVQDSEFNGAINEIALVNSKIPLILQPVMPINYSLDFLFQKQKMALKKLW--- 223 Query: 197 KWRLSVQTHKFIGIR 211 R+ Q HK + ++ Sbjct: 224 DVRIIPQVHKLLQLK 238 >gi|153951290|ref|YP_001397418.1| radical SAM domain-containing protein [Campylobacter jejuni subsp. doylei 269.97] gi|152938736|gb|ABS43477.1| radical SAM domain protein [Campylobacter jejuni subsp. doylei 269.97] Length = 247 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 19/197 (9%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCR---FCDTDFVGIQGTKG 62 + E FL++QGEG + G++A+F RF+GCN ++S + CDT Sbjct: 3 LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFK 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118 Y +L++ + V+TGGEPL+ + P IQ L K FEI E+ Sbjct: 63 ESYETLSTNELLKRVIKLKQGFNPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFES 122 Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 NG+IE P +S K G ++ K + + + +NY F +F Sbjct: 123 NGSIEIDFDRYPFYKECIFALSVKLQNS----GIKKDKRLNFKALKAFKNYAKDSFYKFV 178 Query: 173 LQP--MDGPFLEENTNL 187 L +D FLE N L Sbjct: 179 LDANTLDNSFLEINEIL 195 >gi|229002868|ref|ZP_04160744.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus mycoides Rock3-17] gi|229008542|ref|ZP_04165969.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus mycoides Rock1-4] gi|228752737|gb|EEM02338.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus mycoides Rock1-4] gi|228758393|gb|EEM07564.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus mycoides Rock3-17] Length = 232 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 21/173 (12%) Query: 7 KEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ + Sbjct: 1 MEIFGPTIQGEGMVIGQKTMFIRTAGCDY-----------SCSWCDSAFTW-DGSTKEQI 48 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI-- 122 ++ E G + + ++GG P LL+ L+ L + G A+ET G+ Sbjct: 49 RQMAPEEIWNELVEIGGENFSHVTISGGNPVLLKNIQFLLTVLKENGIRTAIETQGSKWQ 108 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170 E ID + +SPK L + ++ + + +DFE Sbjct: 109 EWLLQIDEVTISPKPPSSKMKTDFTMLDSIIHKLVRKDFSLKVVVFEDYDFEY 161 >gi|291533826|emb|CBL06939.1| Organic radical activating enzymes [Megamonas hypermegale ART12/1] Length = 249 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 63/254 (24%), Positives = 98/254 (38%), Gaps = 64/254 (25%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-------- 57 + EIF ++QGEG + G +F R GCN+ C +CDTD + Sbjct: 8 VSEIFSSIQGEGKYVGCRQLFIRLIGCNM-----------DCPYCDTDKLAHSNLVPCVL 56 Query: 58 ---QGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKR 110 +G +G N L D++ ++ +TGGEPLL + L + L Sbjct: 57 EKCEGYEGDLELKNPLDLNDIMPYINYRLQQPHHSISITGGEPLLYPQIILELAKNLKPL 116 Query: 111 GFEIAVETNGTI-----EPPQGIDWICVSPKAGCDLKIKGGQE---------LKLVFPQV 156 + +ETNGT+ + ID I + K D+ QE K V+ ++ Sbjct: 117 SIPLFLETNGTLVKQLAQVIDEIDIISMDMKLPSDIGKAYWQEHEEFLKLASKKDVYVKI 176 Query: 157 NVSPENYIGFDFER-------------FSLQPMD--GPFLEENTNLAISY------CFQN 195 VS E+ + DFE+ LQP+ G E + + +N Sbjct: 177 VVSNESTVE-DFEKALSIIKNIDENILLVLQPITPLGGLHEAPPEKMLKWQTRAMQVLKN 235 Query: 196 PKWRLSVQTHKFIG 209 R+ QTHK + Sbjct: 236 --VRVIPQTHKMMN 247 >gi|194337298|ref|YP_002019092.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194309775|gb|ACF44475.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 223 Score = 121 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 57/234 (24%), Positives = 85/234 (36%), Gaps = 51/234 (21%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 +I EIF ++QGE AG F R +GC C CDT + G K Sbjct: 5 TLNISEIFHSIQGESSFAGWPCAFIRLAGC-----------GHGCIGCDTAYAEHDGIKL 53 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 G +++ ++ + +TGGEPLLQ V L++ L ++ +ET G Sbjct: 54 G-------IEVVVQRALA--FRAPLIEVTGGEPLLQPAVYSLMRQLCDLEQKVLLETGGF 104 Query: 122 IEPPQG-------IDWICVSPKAGCDLKIKGGQELKL--VFPQVN-----VSPENYIGFD 167 + + ID S CD EL L V P + + ++ Sbjct: 105 LSVAEVDCRVHKIIDLKPPS-SGVCDQNNPENIELALAAVLPHRQNFEFKIVVASREDYE 163 Query: 168 FERFSLQP---MD----------GPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 + R LQ MD G LA + R+ +Q HK+I Sbjct: 164 WARALLQEHGLMDSFTIMMGVSFGKLDPA--ELAEWMLRDRLRARMQLQLHKYI 215 >gi|86153735|ref|ZP_01071938.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613080|ref|YP_999885.1| radical SAM domain-containing protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167004851|ref|ZP_02270609.1| hypothetical protein Cjejjejuni_00920 [Campylobacter jejuni subsp. jejuni 81-176] gi|85842696|gb|EAQ59908.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250333|gb|EAQ73291.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni 81-176] Length = 247 Score = 121 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 19/197 (9%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCR---FCDTDFVGIQGTKG 62 + E FL++QGEG + G++A+F RF+GCN ++S + CDT Sbjct: 3 LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFK 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118 Y +L++ + V+TGGEPL+ + P IQ L K FEI E+ Sbjct: 63 ESYETLNANELLKRVIKLKQDFNPIVVITGGEPLIHYENPEFIKFIQMLLKNKFEIHFES 122 Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 NG+IE P +S K G ++ K + + + +NY F +F Sbjct: 123 NGSIEIDFDRYPFYKECIFALSVKLQNS----GIKKDKRLNFKALKAFKNYAKDSFYKFV 178 Query: 173 LQP--MDGPFLEENTNL 187 L +D FLE N L Sbjct: 179 LDANTLDNSFLEINEIL 195 >gi|283955607|ref|ZP_06373100.1| LOW QUALITY PROTEIN: radical SAM domain protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792832|gb|EFC31608.1| LOW QUALITY PROTEIN: radical SAM domain protein [Campylobacter jejuni subsp. jejuni 1336] Length = 247 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 19/197 (9%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCR---FCDTDFVGIQGTKG 62 + E FL++QGEG + G++A+F RF+GCN ++S + CDT Sbjct: 3 LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNNKTLIGCDTMRAVFTKDFK 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118 Y +L++ + V+TGGEPL+ + P IQ L K FEI E+ Sbjct: 63 ESYETLNANELLKRVIKLKQGFNPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFES 122 Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 NG+IE P +S K G ++ K + + + +NY F +F Sbjct: 123 NGSIEIDFDRYPFYKECIFALSVKLQNS----GIKKDKRLNFKALKAFKNYAKDSFYKFV 178 Query: 173 LQP--MDGPFLEENTNL 187 L +D FLE N L Sbjct: 179 LNANTLDNSFLEINEIL 195 >gi|328885752|emb|CCA58991.1| Queuosine Biosynthesis QueE Radical SAM [Streptomyces venezuelae ATCC 10712] Length = 238 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 23/144 (15%) Query: 4 YSIKEIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG--IQGT 60 + E F T+QGEG G A F R + CNL C CDT + + Sbjct: 11 LRVSEKFGGTVQGEGPSTGVPACFIRLALCNL-----------ICSPCDTPYTWDTTRFD 59 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118 + + + +L+ ++ V+TGGEPL+Q+ L++ L G + +ET Sbjct: 60 LRKEAHYENVEELLA---WALDQPEDLVVVTGGEPLIQMAGLTELVKGLRAAGRTVEIET 116 Query: 119 NGTIEPPQGID----WICVSPKAG 138 NGTI P + + + VSPK Sbjct: 117 NGTIAPSEALVAAGPYFNVSPKLS 140 >gi|315638082|ref|ZP_07893267.1| radical SAM domain protein [Campylobacter upsaliensis JV21] gi|315481930|gb|EFU72549.1| radical SAM domain protein [Campylobacter upsaliensis JV21] Length = 247 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 7/127 (5%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTK 61 + E FL++QGEG AGR+AVF RF+ CN G ++ + + CDT Sbjct: 2 KVVESFLSIQGEGKFAGRLAVFVRFANCNFNCLGFGVKKQKEGRELVGCDTLRAVFTKEY 61 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ----VDVPLIQALNKRGFEIAVE 117 Y +L + V+TGGEPLL + I+ L + FE+ E Sbjct: 62 QNTYENLNAKELFLRVLKMAKDLKPIIVITGGEPLLHHKKSEFLKFIKLLLEAKFEVHFE 121 Query: 118 TNGTIEP 124 TN +I Sbjct: 122 TNASIRV 128 >gi|157414477|ref|YP_001481733.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni 81116] gi|157385441|gb|ABV51756.1| hypothetical protein C8J_0157 [Campylobacter jejuni subsp. jejuni 81116] gi|307747120|gb|ADN90390.1| Radical SAM domain protein [Campylobacter jejuni subsp. jejuni M1] gi|315931973|gb|EFV10926.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni 327] Length = 247 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 19/197 (9%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCR---FCDTDFVGIQGTKG 62 + E FL++QGEG + G++A+F RF+GCN ++S + CDT Sbjct: 3 LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFK 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118 Y +L++ + V+TGGEPL+ + P IQ L K FEI E+ Sbjct: 63 ESYETLNANELLKRVIKLKQDFDPIVVITGGEPLIHYENPEFIKFIQMLLKNKFEIHFES 122 Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 NG+IE P +S K G ++ K + + + +NY F +F Sbjct: 123 NGSIEIDFDRYPFYKECIFALSVKLQNS----GIKKDKRLNFKALKAFKNYAKDSFYKFV 178 Query: 173 LQP--MDGPFLEENTNL 187 L +D FLE N L Sbjct: 179 LDANTLDNSFLEINEIL 195 >gi|322378511|ref|ZP_08052961.1| hypothetical protein HSUHS1_0174 [Helicobacter suis HS1] gi|322380522|ref|ZP_08054704.1| organic radical activating enzyme [Helicobacter suis HS5] gi|321147051|gb|EFX41769.1| organic radical activating enzyme [Helicobacter suis HS5] gi|321149072|gb|EFX43522.1| hypothetical protein HSUHS1_0174 [Helicobacter suis HS1] Length = 246 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 14/145 (9%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGT 60 + E F +LQGEG G+ +VF R GCN G + S + CD+ + Sbjct: 3 LPLVETFYSLQGEGSCVGQPSVFIRLGGCNFKCVGFGVKSMIDSKEVVGCDSAYAVYPNA 62 Query: 61 KGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ----VDVPLIQALNKRGFEIA 115 K + +L +E + VLTGGEP L + + +Q L+ RG I Sbjct: 63 KWSYLKSAQELLTRLEPLIYPSTLP--HIVLTGGEPSLHFNNLILLEALQVLHTRGHTIW 120 Query: 116 VETNGTI----EPPQGIDWICVSPK 136 VE+NG++ + P +SPK Sbjct: 121 VESNGSVFFEFKAPLNTLHFTLSPK 145 >gi|57237168|ref|YP_178180.1| radical SAM domain-containing protein [Campylobacter jejuni RM1221] gi|57165972|gb|AAW34751.1| radical SAM domain protein [Campylobacter jejuni RM1221] gi|284925453|gb|ADC27805.1| radical SAM domain-containing protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315057600|gb|ADT71929.1| Queuosine Biosynthesis QueE Radical SAM [Campylobacter jejuni subsp. jejuni S3] Length = 247 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 19/197 (9%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCR---FCDTDFVGIQGTKG 62 + E FL++QGEG + G++A+F RF+GCN ++S + CDT Sbjct: 3 LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFK 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118 Y +L++ + V+TGGEPL+ + P IQ L K FEI E+ Sbjct: 63 ESYETLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFES 122 Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 NG+IE P +S K G ++ K + + + +NY F +F Sbjct: 123 NGSIEINFDRYPFYKECIFALSVKLQNS----GIKKDKRLNFKALKAFKNYAKDSFYKFV 178 Query: 173 LQP--MDGPFLEENTNL 187 L +D FLE N L Sbjct: 179 LDANTLDNSFLEINEIL 195 >gi|86151465|ref|ZP_01069680.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni 260.94] gi|315123765|ref|YP_004065769.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841812|gb|EAQ59059.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni 260.94] gi|315017487|gb|ADT65580.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 247 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 85/205 (41%), Gaps = 20/205 (9%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCR---FCDTDFVGIQGTKG 62 + E FL++QGEG + G++A+F RF+GCN ++S + CDT Sbjct: 3 LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFK 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118 Y +L++ + V+TGGEPL+ + P IQ L K FEI E+ Sbjct: 63 ESYETLNANELLKRVIKLKQDFNPIVVITGGEPLIHYENPEFIKFIQMLLKNKFEIHFES 122 Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 NG+IE P +S K G ++ K + + + +NY F +F Sbjct: 123 NGSIEIDFDRYPFYKECIFALSVKLQNS----GIKKDKRLNFKALKAFKNYAKDSFYKFV 178 Query: 173 LQPMDGPFLEENTNLAISYCFQNPK 197 L D L+ + + P Sbjct: 179 L---DANTLDNSLLEINEILKEAPN 200 >gi|86149669|ref|ZP_01067899.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597314|ref|ZP_01100549.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni 84-25] gi|218561841|ref|YP_002343620.1| putative radical SAM domain protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839937|gb|EAQ57196.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190375|gb|EAQ94349.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112359547|emb|CAL34331.1| putative radical SAM domain protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315927801|gb|EFV07127.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315928774|gb|EFV08047.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni 305] Length = 247 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 19/197 (9%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCR---FCDTDFVGIQGTKG 62 + E FL++QGEG + G++A+F RF+GCN ++S + CDT Sbjct: 3 LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFK 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118 Y +L++ + V+TGGEPL+ + P IQ L K FEI E+ Sbjct: 63 ESYETLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFES 122 Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 NG+IE P +S K G ++ K + + + +NY F +F Sbjct: 123 NGSIEIDFDRYPFYKECIFALSVKLQNS----GIKKDKRLNFKALKAFKNYAKDSFYKFV 178 Query: 173 LQP--MDGPFLEENTNL 187 L +D FLE N L Sbjct: 179 LDANTLDNSFLEINEIL 195 >gi|226945710|ref|YP_002800783.1| Radical SAM protein [Azotobacter vinelandii DJ] gi|226720637|gb|ACO79808.1| Radical SAM protein [Azotobacter vinelandii DJ] Length = 193 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 47/212 (22%), Positives = 71/212 (33%), Gaps = 51/212 (24%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF R +GC L +C +CDT + + G + + + + Sbjct: 1 MPTVFVRLTGCPL-----------RCGYCDTAYAF---SGGAVLPLSVILERV------A 40 Query: 82 EKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140 RY +TGGEPL Q + + L++ L G+E+++ET+G + + D Sbjct: 41 SYGPRYVCVTGGEPLAQPNSIELLRLLCDAGYEVSLETSGAFDISA----VDCRVSRVLD 96 Query: 141 LKIKGGQEL-----------------KLVFPQVN-----VSPENYIGFDFE--RFSLQPM 176 LK E+ K V VS D P Sbjct: 97 LKTPDSGEVARNRYANMTLLTRNDQMKFVLCSRQDYEWAVSKLIEYRLDERVGEVLFSPS 156 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 G E LA N RL +Q HK + Sbjct: 157 HGQL--EGRELADWIVADNLPVRLQLQLHKIL 186 >gi|17986377|ref|NP_539011.1| radical SAM domain protein ExsD [Brucella melitensis bv. 1 str. 16M] gi|17981967|gb|AAL51275.1| exsd protein [Brucella melitensis bv. 1 str. 16M] Length = 243 Score = 120 bits (303), Expect = 9e-26, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 59/166 (35%), Gaps = 15/166 (9%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF T+QGEG G VF R GC+ +CD ++ Sbjct: 7 IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDYRWA-----------WCDNLHA-VESRFR 54 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + + + E +K L+GG P +Q LI+ G+ A+ET G++ Sbjct: 55 HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSV 114 Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 + +D + +SPK L P + F Sbjct: 115 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 160 >gi|222445352|ref|ZP_03607867.1| hypothetical protein METSMIALI_00980 [Methanobrevibacter smithii DSM 2375] gi|261350087|ref|ZP_05975504.1| coenzyme PQQ synthesis protein III [Methanobrevibacter smithii DSM 2374] gi|222434917|gb|EEE42082.1| hypothetical protein METSMIALI_00980 [Methanobrevibacter smithii DSM 2375] gi|288860873|gb|EFC93171.1| coenzyme PQQ synthesis protein III [Methanobrevibacter smithii DSM 2374] Length = 232 Score = 120 bits (303), Expect = 9e-26, Method: Composition-based stats. Identities = 66/252 (26%), Positives = 96/252 (38%), Gaps = 61/252 (24%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK I EIF + QGEG G+ +F RF+GCNL C +CDT+ + + Sbjct: 1 MKA-PIIEIFSSFQGEGLFIGQRQIFVRFAGCNL-----------NCNYCDTNDSKSEKS 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETN 119 G VD++ IE+ + TGGEP L I + ++ +I +ETN Sbjct: 49 -GKLMTVDEVLAAIEK---VRTPDCHVISFTGGEPSLYP--EFINEVARQTDLKILLETN 102 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKG-----------GQELKLV----------FPQVNV 158 GT+ P+ ID+I D+K+ E+K V + +V V Sbjct: 103 GTL--PEKIDFIEKLDIVSLDIKLPEHFNNDFDKDIFINEIKSVNLLMAKSIMLYCKVVV 160 Query: 159 SP---ENYIGFDFERFS--------LQPMDGPFLE------ENTNLAI--SYCFQNPKWR 199 P N I E+ S LQ + P N+ L Q + Sbjct: 161 LPSTKTNLIQEVMEKLSNNISSKNKLQIIIQPSSPLEDWGNSNSKLFEFSEIVGQYFEVS 220 Query: 200 LSVQTHKFIGIR 211 Q HK + I Sbjct: 221 TIPQVHKILNIE 232 >gi|148643115|ref|YP_001273628.1| coenzyme PQQ synthesis protein [Methanobrevibacter smithii ATCC 35061] gi|148552132|gb|ABQ87260.1| coenzyme PQQ synthesis protein, SAM family [Methanobrevibacter smithii ATCC 35061] Length = 232 Score = 120 bits (303), Expect = 9e-26, Method: Composition-based stats. Identities = 66/252 (26%), Positives = 94/252 (37%), Gaps = 61/252 (24%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK I EIF + QGEG G+ +F RF+GCNL C +CDT+ + + Sbjct: 1 MKA-PIIEIFSSFQGEGLFIGQRQIFVRFAGCNL-----------NCSYCDTNDSKSEKS 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETN 119 G VD + IE + TGGEP L I + ++ +I +ETN Sbjct: 49 -GKLMTVDDVLAAIEN---VRTPDCHVISFTGGEPSLYP--EFINEVARQTDLKILLETN 102 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKG-----------GQELKLV----------FPQVNV 158 GT+ P+ ID+I D+K+ E+K V + +V V Sbjct: 103 GTL--PEKIDFIEKLDIVSLDIKLPEHFNNDFNEDIFINEIKSVNLLMAKSIMLYCKVVV 160 Query: 159 SP---ENYIGFDFERFS--------LQPMDGPFLE------ENTNLAI--SYCFQNPKWR 199 P N I E+ S LQ + P N+ L Q + Sbjct: 161 LPSTKTNLIQEVMEKLSNNISSKNKLQIIIQPSSPLEDWGNSNSKLFEFSEIVGQYFEVS 220 Query: 200 LSVQTHKFIGIR 211 Q HK + I Sbjct: 221 TIPQVHKILNIE 232 >gi|297617391|ref|YP_003702550.1| radical SAM protein [Syntrophothermus lipocalidus DSM 12680] gi|297145228|gb|ADI01985.1| Radical SAM domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 243 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 61/253 (24%), Positives = 92/253 (36%), Gaps = 58/253 (22%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-------- 52 MK Y + EI ++QGEG AG +F RF GCNL +C +CDT Sbjct: 1 MKAY-LSEITESIQGEGTLAGSRQIFLRFCGCNL-----------RCPYCDTVGSLSKTP 48 Query: 53 --DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALN 108 G+K + + T + R+ LTGGEPLL D L L Sbjct: 49 SCKIFLKPGSKNDFREYANPLSISDVVKATANFDTRWVSLTGGEPLLWADYLKRLAPILV 108 Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL---------------VF 153 +G+ + +ETNGT+ +D + + D K+ + L V+ Sbjct: 109 SKGYRMLLETNGTL-VENLVDILEFTAVISMDFKLPSAIGIDLFPVHKRFLELAACRPVY 167 Query: 154 PQVNVSPENY---IGFDFERFS---------LQPMDGPFLEENTN------LAISYCFQN 195 +V V+P IG + LQP+ + L + Sbjct: 168 VKVVVTPSTEPWEIGEVARIIAGVDATIPLVLQPVSLVTSQVAVQAEKLFDLQLDALKHL 227 Query: 196 PKWRLSVQTHKFI 208 R+ Q HK++ Sbjct: 228 EDVRVIPQIHKYL 240 >gi|313673522|ref|YP_004051633.1| radical sam domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940278|gb|ADR19470.1| Radical SAM domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 237 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 59/249 (23%), Positives = 91/249 (36%), Gaps = 66/249 (26%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK---- 61 IKE+F ++QGEG + G + +F RFSGC S C+ CDTD+ Sbjct: 12 IKEVFTSIQGEGKYVGALQLFVRFSGC-----------SIGCKGCDTDYSFTDSFDFNGT 60 Query: 62 ---GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAV 116 ++LA +I + +TGGEPLLQ D LI L G+ I + Sbjct: 61 SVLSNPIKPERLACIIYDHI--KPNSIHSISITGGEPLLQKDFLKELIFYLKGYGYRIFL 118 Query: 117 ETNGTI-----EPPQGIDWICVSPKAGCDLKIKGG-QELKLVFPQVNVSPENYIGFDFE- 169 ET+G E +D I + K G ++ E++ + + + + YI + Sbjct: 119 ETSGFFIDRLNEVGDMVDIISLDFKLGESFGVEFSLDEIRKI--KDEIKNKIYIKIVIKN 176 Query: 170 --------------------RFSLQPMDGPFLEENTNLAISYCFQN-------PKWRLSV 202 F L D + + Y + N P Sbjct: 177 NLDFVVGRKILDGLALLNKTEFYLHFYDNCI--KINQGIMDYFYSNGVDVFYVP------ 228 Query: 203 QTHKFIGIR 211 Q HK + I+ Sbjct: 229 QLHKLLEIK 237 >gi|149194883|ref|ZP_01871977.1| hypothetical protein CMTB2_08312 [Caminibacter mediatlanticus TB-2] gi|149135042|gb|EDM23524.1| hypothetical protein CMTB2_08312 [Caminibacter mediatlanticus TB-2] Length = 232 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 90/223 (40%), Gaps = 44/223 (19%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 L I EIF ++QGEG ++G ++F R GCNL ++ CD+ + + K Sbjct: 5 LLPISEIFYSIQGEGKYSGTPSIFVRVGGCNLTCPGFGNKG------CDSYYAVDKSYKN 58 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNG 120 N+ + I++++ K + V+TGGEP L PLI+ + EI +ETN Sbjct: 59 EWENLS--IEEIKKEFSKYLKFNPHLVITGGEPTLYYEKLYPLIEWFSG---EITIETNA 113 Query: 121 T--IEPPQGIDWICVSPKAGCDLKIKGGQE----------------------LKLVFPQV 156 T I+ + + V+ +K+ E K V + Sbjct: 114 TIFIDFEKCPKYKDVT--FAMSVKLSNSGEEYKKRVNKKAILNISKNAKKSFFKFVIDRD 171 Query: 157 NVSPENYI--GFDFERFSLQPM--DGPFLEENTNLAISYCFQN 195 I G + E + + P+ + LE+N +C +N Sbjct: 172 LKEEIEDITEGINLEIYCM-PLGANREELEKNAPFVFDFCLKN 213 >gi|255321816|ref|ZP_05362966.1| FO synthase subunit 2 2 [Campylobacter showae RM3277] gi|255300920|gb|EET80187.1| FO synthase subunit 2 2 [Campylobacter showae RM3277] Length = 254 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 13/159 (8%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSG-----REQDRLSAQCRFCDTDFV 55 M L ++ E FL++QGEG +GR+A+F RF+GCNL + CDT Sbjct: 1 MSL-NLVESFLSIQGEGASSGRLAIFLRFAGCNLNCAGFGVRTVSPKTGETLTGCDTIRA 59 Query: 56 GIQG--TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALN---K 109 G + D+L +I + + V+TGGEPLL + L+ LN Sbjct: 60 VFTGHFSYQKITRADELIKII-QNLSANLRRKPIVVITGGEPLLHHKNQILLDFLNFATS 118 Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 G+E ETNGTIE G I + +K++ E Sbjct: 119 EGYEAHFETNGTIEVDFGKFEIYKKCRFAVSVKLENSGE 157 >gi|254512582|ref|ZP_05124648.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Rhodobacteraceae bacterium KLH11] gi|221532581|gb|EEE35576.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Rhodobacteraceae bacterium KLH11] Length = 233 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 55/142 (38%), Gaps = 15/142 (10%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 I EIF T+QGEG G+ VF R GC+ +C +CD+ + T Sbjct: 1 MTLRIAEIFGPTVQGEGALIGQPTVFVRTGGCDF-----------RCSWCDSLHA-VDST 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + D+ E L+GG P +Q PLI G+ A ET G Sbjct: 49 FRQSWKTMSTRDVWTEIQRLSGGRPLTVSLSGGNPAIQDFGPLIGYGLDAGYAFACETQG 108 Query: 121 TIEPPQGIDW--ICVSPKAGCD 140 +I P D + +SPK Sbjct: 109 SIAKPWFADLAMLVLSPKPPSS 130 >gi|323701737|ref|ZP_08113408.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574] gi|323533273|gb|EGB23141.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574] Length = 247 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 61/257 (23%), Positives = 88/257 (34%), Gaps = 68/257 (26%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD------F 54 M + ++EIF ++QGEG + G VF RF+GCN W C +CDT Sbjct: 1 MPVAYLQEIFSSVQGEGPYVGCRQVFIRFAGCN-WC----------CAYCDTPTEPQPAT 49 Query: 55 VGIQGTKGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLI 104 ++ + G R Q+A++I + + LTGGEPLL + LI Sbjct: 50 CVVEKSPGYRDFVNLANPMTPGQVAEIIRQYYNLSWHHS--VSLTGGEPLLHTEYIKDLI 107 Query: 105 QALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159 + L I +ETNGT+ GID I + K +L F +V Sbjct: 108 KHLPSTRRGIFLETNGTLPDRLTEVITGIDIISMDVKLSSATGTPTPWDLHRHFIKVARQ 167 Query: 160 PENYIGF----------------------DFERFSLQPMDGPFLEEN---------TNLA 188 E Y+ LQP+ A Sbjct: 168 RELYVKIVVTAETKVEELQKAGELLQELAPQAVLILQPVTPNCGVIAPPVSRVLYLQEQA 227 Query: 189 ISYCFQNPKWRLSVQTH 205 + R+ QTH Sbjct: 228 LKIIK---NVRVIPQTH 241 >gi|148926329|ref|ZP_01810013.1| hypothetical protein Cj8486_0156c [Campylobacter jejuni subsp. jejuni CG8486] gi|145844721|gb|EDK21826.1| hypothetical protein Cj8486_0156c [Campylobacter jejuni subsp. jejuni CG8486] Length = 247 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 19/197 (9%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCR---FCDTDFVGIQGTKG 62 + E FL++QGEG + G++A+F RF+GCN ++S + CDT Sbjct: 3 LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFK 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118 Y +L++ + V+TGGEPL+ + P IQ L K FEI E+ Sbjct: 63 ESYKTLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFES 122 Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 NG+IE P +S K G ++ K + + + +NY F +F Sbjct: 123 NGSIEIDFDRYPFYKECIFALSVKLQNS----GIKKDKRLNFKALKAFKNYAKDSFYKFV 178 Query: 173 LQP--MDGPFLEENTNL 187 L +D FLE N L Sbjct: 179 LDANTLDNSFLEINEIL 195 >gi|145554191|gb|ABP68894.1| unknown [Bacillus sp. PL-12] Length = 258 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 16/155 (10%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ Sbjct: 20 IPVMEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCAWCDSSFTW-DGSGK 67 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 ++ E G Y ++GG P L ++ L++ L + I +ET G+ Sbjct: 68 DLVRQMDADEVWRELKALGGDGFTYVTISGGNPALIKNLSGLVELLKENQISICLETQGS 127 Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154 + ID + +SPK + L + Sbjct: 128 KWQDWFLEIDALTLSPKPPSSGMETDFEVLDQIVE 162 >gi|254457594|ref|ZP_05071022.1| radical SAM domain protein [Campylobacterales bacterium GD 1] gi|207086386|gb|EDZ63670.1| radical SAM domain protein [Campylobacterales bacterium GD 1] Length = 253 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 10/132 (7%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS----GREQDRLSAQCRFCDTDFVGIQ 58 + + E F ++QGEG + G ++F RF GCN+ E+ + CDT + + Sbjct: 1 MLYLVEHFYSIQGEGRYTGVPSLFFRFGGCNMKCEGFGCEEEASDGTKVLGCDTVYAVNK 60 Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYC--VLTGGEPLLQVD----VPLIQALNKRGF 112 ++ Q + E R VLTGGEPL+ + V ++ L++ G Sbjct: 61 EHFSFNWSPIQKTQELLNVLDLYELPQRPVDIVLTGGEPLIYANEGIFVEFLEKLHEEGH 120 Query: 113 EIAVETNGTIEP 124 +I ETNG+I Sbjct: 121 KITFETNGSIAV 132 >gi|229099948|ref|ZP_04230870.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus Rock3-29] gi|228683493|gb|EEL37449.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus Rock3-29] Length = 233 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 16/168 (9%) Query: 8 EIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66 EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ + Sbjct: 3 EIFGPTIQGEGMVIGQKTMFIRTAGCDY-----------SCSWCDSAFTW-DGSAKEQVR 50 Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--E 123 ++ E G + + ++GG P LL+ L+ L + G A+ET G+ E Sbjct: 51 QMAPEEIWNELVEIGGENFSHVTISGGNPVLLKNIQFLLTVLKENGIRTAIETQGSKWQE 110 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171 I+ + +SPK L V ++ + FE + Sbjct: 111 WLLQIEEVTISPKPPSSKMKTDFTMLDSVIHKLERKDFSLKVVVFEEY 158 >gi|222824418|ref|YP_002575992.1| radical SAM domain protein [Campylobacter lari RM2100] gi|222539639|gb|ACM64740.1| radical SAM domain protein [Campylobacter lari RM2100] Length = 249 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 53/195 (27%), Positives = 84/195 (43%), Gaps = 20/195 (10%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTKG 62 + E FL++QGEG ++G +A+F RF+GCN G ++++ S CDT Sbjct: 3 VVETFLSIQGEGKYSGNLAIFVRFAGCNFNCVGFGVKKEKDSKILLGCDTIRAVFTKEFK 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL----QVDVPLIQALNKRGFEIAVET 118 Y L +E V+TGGEPLL + + I L + F + ET Sbjct: 63 TCYKTYTSVKLFDEVLKLANSRKAIVVITGGEPLLNYQNKDFLCFINLLLENDFMVHFET 122 Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 N +IE P + + G L G ++ K + + + ++Y F +F Sbjct: 123 NASIEIDFEKYPLYKKCYFAL----GVKLSNSGVKKEKRINEKALKAFKHYAKDSFYKFV 178 Query: 173 LQPMDGPFLEENTNL 187 L D FL+E+ L Sbjct: 179 L---DKDFLQESKAL 190 >gi|255658308|ref|ZP_05403717.1| radical SAM domain protein [Mitsuokella multacida DSM 20544] gi|260849626|gb|EEX69633.1| radical SAM domain protein [Mitsuokella multacida DSM 20544] Length = 251 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 62/257 (24%), Positives = 94/257 (36%), Gaps = 66/257 (25%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-------FVGI 57 ++ EIF ++QGEG + G VF R GCNL C +CDT+ + Sbjct: 7 NLIEIFSSIQGEGKYVGCRQVFVRLEGCNL-----------DCSYCDTENKPGSHPACQV 55 Query: 58 QGTKGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQAL 107 + G R + A +I E TGGEPLL ++ L Sbjct: 56 ETAAGSRTFATIKNPMTASETAAVIANL--LREVPHEAVSFTGGEPLLHAAFIRAVVLQL 113 Query: 108 NKRG--FEIAVETNGTI-----EPPQGIDWICVSPKAGCDLKIKGGQ------EL---KL 151 G ++ +ETNGT+ D I + K + + EL K Sbjct: 114 RALGQPCKVFLETNGTLYRELASILDITDIISMDIKLPSIVSRPQWEAHARFLELARTKD 173 Query: 152 VFPQVNVSPENYIGFDFER-------------FSLQPMDG-----PFLEENTNLAISYCF 193 ++ ++ VS E +FE+ F +QP+ E S+ Sbjct: 174 LYVKLVVSAETT-KEEFEKSVALLEEQAPDALFIIQPVTPYGGCKAASPEKILACQSHAL 232 Query: 194 QNPK-WRLSVQTHKFIG 209 ++ K R+ QTHK IG Sbjct: 233 KHLKDVRVIPQTHKMIG 249 >gi|15669841|ref|NP_248655.1| coenzyme PQQ synthesis protein III [Methanocaldococcus jannaschii DSM 2661] gi|41688758|sp|Q59039|Y1645_METJA RecName: Full=Uncharacterized protein MJ1645 gi|1592229|gb|AAB99666.1| coenzyme PQQ synthesis protein III isolog (Haemophilus influenzae} [Methanocaldococcus jannaschii DSM 2661] Length = 243 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 58/258 (22%), Positives = 94/258 (36%), Gaps = 72/258 (27%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD----FVGIQGTK 61 I+EIF ++ GEG + GR +F RF+GC L C +CD + F ++ Sbjct: 2 IREIFNSIMGEGKYIGRRFIFVRFAGCPL-----------NCVYCDEESKGYFNRVEKIP 50 Query: 62 G-GRYNV---DQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115 G G + ++ D+I + TGGEPLL + + L +G+ Sbjct: 51 GSGEFETLQKMEIEDIINAIDKLKTPDLFAVSFTGGEPLLYHKQIKEIAEILKDKGYRTF 110 Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKG--------------GQELK----------- 150 +E+NG P+ I + + A D+K+K ELK Sbjct: 111 LESNG--MFPERIFYFDI---ASIDIKLKEHFEYIKDEDYEKLYKNELKTIKKLYNLNSD 165 Query: 151 -----LVFPQVNVSPENYIGFDFE-----RFSLQPM---------DGPFLEENTNLAISY 191 ++ + N+ I D +QP+ L E Y Sbjct: 166 IYAKVVIMEETNIEDVKIIAKDLSDIGNITLCIQPVTPHGNIKSPSQRKLFEIMEACGEY 225 Query: 192 CFQNPKWRLSVQTHKFIG 209 N L++Q HK++G Sbjct: 226 LKDNVM--LTIQMHKYLG 241 >gi|283955402|ref|ZP_06372901.1| hypothetical protein C414_000450084 [Campylobacter jejuni subsp. jejuni 414] gi|283793162|gb|EFC31932.1| hypothetical protein C414_000450084 [Campylobacter jejuni subsp. jejuni 414] Length = 254 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 7/126 (5%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCR---FCDTDFVGIQGTKG 62 + E FL++QGEG ++G++A+F RF+GCN ++ + CDT Sbjct: 3 LVESFLSIQGEGKYSGKLAIFMRFAGCNFNCLGFNVKILKNDKILTGCDTIRAVFTKDFK 62 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118 Y +L++ + V+TGGEPL+ + P IQ L K FEI E+ Sbjct: 63 ENYETLNANELLKRVIKLKQNFDPIIVITGGEPLIHYENPEFINFIQMLLKNKFEIHFES 122 Query: 119 NGTIEP 124 NG+IE Sbjct: 123 NGSIEI 128 >gi|189424905|ref|YP_001952082.1| radical SAM protein [Geobacter lovleyi SZ] gi|189421164|gb|ACD95562.1| Radical SAM domain protein [Geobacter lovleyi SZ] Length = 254 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 70/159 (44%), Gaps = 32/159 (20%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-----VGIQG 59 + EIF +LQGEG AG +F RF GCNL C FCDTDF ++ Sbjct: 12 PLVEIFSSLQGEGVLAGYRQIFVRFPGCNL-----------DCSFCDTDFEAQTACRVET 60 Query: 60 TKGG--------RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111 T G +++ L +I +TGGEP+L D+ L + L + Sbjct: 61 TPGSGQFQELAQPVSLETLLGIITRWCKQLPNAHHSISITGGEPMLHADL-LARWLPELN 119 Query: 112 --FEIAVETNGTIE--PPQGIDWICVSPKAGCDLKIKGG 146 I +ETNGT+ P+ I+ + V D+K+ G Sbjct: 120 ILLPIHLETNGTLPEALPRLIEHLDV---ISMDIKLPGS 155 >gi|118580205|ref|YP_901455.1| radical SAM domain-containing protein [Pelobacter propionicus DSM 2379] gi|118502915|gb|ABK99397.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379] Length = 249 Score = 118 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 62/259 (23%), Positives = 95/259 (36%), Gaps = 63/259 (24%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-----VG 56 + I EIF ++QGEG AGR +F R + CNL +C +CDT F Sbjct: 3 ESLPIAEIFSSIQGEGYLAGRRQIFIRLTRCNL-----------ECSYCDTGFGEGESCL 51 Query: 57 IQGTKGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL- 107 ++ + G +D+L D++ + LTGGEPLL + L L Sbjct: 52 VENSPGSNVFEHFPRAVGLDRLMDILNAWTWALPRAHHSISLTGGEPLLFAPL-LSDWLP 110 Query: 108 NKRG-FEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG----GQEL------------- 149 RG + +ETNGT+ G I + D+K+ G EL Sbjct: 111 RLRGILPVHLETNGTLPIELGR-IIRLVDYVSMDMKLPSTAACGGELWDTHRRFLETARG 169 Query: 150 -----KLVF-PQVNVSPENYIGFDFERF------SLQPMDGPFL------EENTNLAISY 191 K+V Q + + + + LQP+ P +L Sbjct: 170 KNVSVKIVVGEQSDAAEIEQVCRIIAQIRPDTPLFLQPLSLPDSHCGISAAHLLHLQALA 229 Query: 192 CFQNPKWRLSVQTHKFIGI 210 + R+ Q HK +G+ Sbjct: 230 AARLSDVRVIPQMHKLMGV 248 >gi|301167425|emb|CBW27007.1| putative radical SAM domain protein [Bacteriovorax marinus SJ] Length = 233 Score = 118 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 92/245 (37%), Gaps = 57/245 (23%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK + I I+ +GEG H G +F RF GC + C CD+ Sbjct: 1 MKSFLINSIYPATEGEGVHIGTPQIFVRFQGC-----------AIGCLNCDSKDTWD--F 47 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAV 116 G + +D++ IE+ G + + +TGG+PL L+ L +RG+ I + Sbjct: 48 TGRNWTLDEVLGAIED---AGGERIKRVSITGGDPLHPSHTEQVSLLVSTLKERGYFINI 104 Query: 117 ETNGTI---EPPQGIDWICVS---PKAGCDLKIKGGQELKLVFP---QVNVSPENYIGFD 167 E GT E ID+I P G +++ +L +P Q+ E F+ Sbjct: 105 EAAGTRVVDEIFNKIDFISFDFKTPSTGVKTRVQNLNKLIQNYPNKFQIKAVVETREDFE 164 Query: 168 FERFSLQPMDGPFLEENTNLAISYCF--------QNP--------KW--------RLSVQ 203 + L N +L+ +C + P KW R+ Q Sbjct: 165 ATL----DIYNELLSMNESLSFPWCLTPSYNLNEEFPLERFRNVIKWNEEGGSIFRVIGQ 220 Query: 204 THKFI 208 HK++ Sbjct: 221 QHKWL 225 >gi|119715336|ref|YP_922301.1| radical SAM domain-containing protein [Nocardioides sp. JS614] gi|119535997|gb|ABL80614.1| Radical SAM domain protein [Nocardioides sp. JS614] Length = 246 Score = 118 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 73/209 (34%), Gaps = 33/209 (15%) Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF TLQGEG AG+ A F R CNL C +CDT + ++ Sbjct: 22 ISEIFGPTLQGEGPSAGKSAAFVRLGACNL-----------ACVWCDTSYTW-DSSRYDL 69 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTI 122 + E V+TGGEP LQ L +A+ + G + +ET+G++ Sbjct: 70 ASELVAKPTAEVADKALSFGVPLVVITGGEPALQAVEAARLAEAVTRSGSAVELETSGSL 129 Query: 123 EPPQGID---WICVSPKAGCDLKIKGGQ------ELKLVFPQ-----VNVSPENYIGFDF 168 D I VSPK + E V P V SPE D Sbjct: 130 PLGPLADAVRLIVVSPKLANAGGRPQARLRWPVLEAISVLPHSVLKFVVASPEELAEVDE 189 Query: 169 ERFSLQ--PMDGPFLEENTNLAISYCFQN 195 LQ P + E T Sbjct: 190 ITSRLQTKPERVWIMPEGTER--ETVLAR 216 >gi|238018973|ref|ZP_04599399.1| hypothetical protein VEIDISOL_00833 [Veillonella dispar ATCC 17748] gi|237864457|gb|EEP65747.1| hypothetical protein VEIDISOL_00833 [Veillonella dispar ATCC 17748] Length = 247 Score = 118 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 85/257 (33%), Gaps = 74/257 (28%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 ++ EIF ++ GEG G + F R CN +C +CDT + + Sbjct: 2 NVIEIFASIDGEGSRQGLLTTFLRLHDCN-----------IRCSYCDTTYSYGIDSTFTD 50 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRG----------- 111 V ++AD IE +TGGEPLLQ V LI LN+R Sbjct: 51 MTVREVADAIESLG------NHRITITGGEPLLQEAAVVELIDELNRRKSAKLEDEPCTD 104 Query: 112 ----------------------FEIAVETNGTIEPPQGID--WICVSPKAGCDLKIKGGQ 147 ++ +ETNGTI P + W K L K Sbjct: 105 IKSTTGINVSVDAQDVLDSESLYDFNIETNGTIIPSFHRENVWFTYDYKTPSSLAEKSMN 164 Query: 148 --------E---LKLV---FPQVNVSPENYIGFDFE-RFSLQPMDGPFLEENTNLAISYC 192 E +K V ++ + + + + P+ G I Y Sbjct: 165 LDIFKVSREQDLIKFVVGSVEDLDCMRHMINQYPTKAQIYVSPVWGKIEAAA---IIDYM 221 Query: 193 FQNP--KWRLSVQTHKF 207 ++ R +Q HKF Sbjct: 222 NEHNLQNVRFQLQIHKF 238 >gi|317473656|ref|ZP_07932945.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA] gi|316898946|gb|EFV20971.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA] Length = 173 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 19/126 (15%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M+++ I E F+++ GEG AGR+++F R GCNL C +CDT + + Sbjct: 1 MEVFKIAESFVSINGEGKKAGRLSMFIRLRGCNL-----------NCSYCDTKWAISKKG 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI-QALNKRGFEIAVET 118 + +++ +++E + LTGGEPLL ++ LI L+ E+ +ET Sbjct: 50 EAELMTAAEVSQMVKESGV------DLVTLTGGEPLLDENISELIGGILSLPKMELEIET 103 Query: 119 NGTIEP 124 NG+I Sbjct: 104 NGSIPI 109 >gi|327400839|ref|YP_004341678.1| Radical SAM domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316347|gb|AEA46963.1| Radical SAM domain protein [Archaeoglobus veneficus SNP6] Length = 238 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 97/248 (39%), Gaps = 67/248 (27%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I+EIF ++QGEG G +F RF+ CNL C +CDT T Sbjct: 14 IREIFESIQGEGILVGVRQLFVRFARCNL-----------NCIYCDTPTDSTDCTNH--I 60 Query: 66 NVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123 ++L + + ++++ ++ LTGGEPLL D I +L K +ETN ++ Sbjct: 61 TGEKLPNPVSREYVSEFFDRNVHSICLTGGEPLLYAD--FIASLPKT-RPFYLETNMSLP 117 Query: 124 ----PPQGIDWICVSPKAGCDLKIKGGQEL---------------------KLVFPQV-- 156 +D++ K + + G +EL K V P+ Sbjct: 118 EMAKKLTHVDFVAGDFKVREAI-VDGYEELVENTVRCFRILRNREDRLTFCKFVLPERFD 176 Query: 157 -------NVSPENYIGFDFERFSLQPMDG-------PFLEENTNLAISYCFQNPKWRLSV 202 +S ENY+ E F LQP+ G LE L C R+ Sbjct: 177 AEEVINNAISVENYV----ECFILQPVFGTSKRGIETILELQKVLMEKVCV---DVRVIP 229 Query: 203 QTHKFIGI 210 Q HK++G+ Sbjct: 230 QVHKYLGV 237 >gi|85707657|ref|ZP_01038723.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter sp. NAP1] gi|85689191|gb|EAQ29194.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter sp. NAP1] Length = 245 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 58/173 (33%), Gaps = 26/173 (15%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---------IQ 58 EIF ++QGEG G F R S CNL C +CDT + Sbjct: 15 EIFASIQGEGPSMGTPVAFIRLSRCNL-----------ACTWCDTAYTWRFEGDNRPHRD 63 Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN-KRGFEIAVE 117 G + R + + V+TGGEPL+Q PL L E+ +E Sbjct: 64 GIEYERKANQVALSPAKAAAKIAVLGQKRLVITGGEPLMQ-CGPLADMLAILPDIEVEIE 122 Query: 118 TNGTIEPPQGIDW----ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 TNGT ID VSPK + P + F Sbjct: 123 TNGTTRASAHIDIRVDQYNVSPKLAHSGNDASLALIAERLDDYAADPRAFFKF 175 >gi|20094254|ref|NP_614101.1| organic-radical-activating enzyme [Methanopyrus kandleri AV19] gi|19887288|gb|AAM02031.1| Organic-radical-activating enzyme [Methanopyrus kandleri AV19] Length = 252 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 62/251 (24%), Positives = 91/251 (36%), Gaps = 64/251 (25%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56 ++ E+FL+LQGEG G F RFSGCNL +C +CD Sbjct: 13 LNVYEVFLSLQGEGKFVGEPQAFVRFSGCNL-----------RCAYCDEPASRSSRRRAL 61 Query: 57 ---IQGTKGGRYNV----DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQA 106 + G V + + +++ E E LTGGEPL+Q LI+ Sbjct: 62 IRRVSGEVELELPVPCGPEDVVEVLVELEDL-EDTFGTVSLTGGEPLVQPWGALKELIER 120 Query: 107 LNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIKG-------------------G 146 L +RGF + +ETN ++ ID + D+K+ Sbjct: 121 LRERGFRVLLETNASLPDRAPLIDELA--DVVSADVKLPSHGPNMDDFPDRCLRFLERIS 178 Query: 147 QEL--KLV------FPQVNVSPENYIGFDFERFSLQPMDGP--FLEENTNLAISYCFQNP 196 E+ K+V + + + E LQP G LE+ LA N Sbjct: 179 AEVYAKVVLVDEECYQHAESALKGLHRLGVEPIYLQPATGSEHDLEDLWELA---GLVNA 235 Query: 197 KWRLSVQTHKF 207 R+ Q HK Sbjct: 236 DVRVLPQVHKL 246 >gi|222055915|ref|YP_002538277.1| radical SAM protein [Geobacter sp. FRC-32] gi|221565204|gb|ACM21176.1| Radical SAM domain protein [Geobacter sp. FRC-32] Length = 249 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 66/254 (25%), Positives = 97/254 (38%), Gaps = 68/254 (26%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-----FVGIQGTKG 62 E+F ++QGEG G VF RFSGCNL C +CDT+ + ++ T G Sbjct: 10 EVFSSIQGEGLLVGLRQVFIRFSGCNLT-----------CSYCDTEPDRTQYCQLESTPG 58 Query: 63 GR--------YNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLL--QVDVPLIQALNKRG 111 R VD+L +L+ W G + +TGGEPLL Q+ L+ AL + Sbjct: 59 RRDFFQVENPVPVDRLVNLV-SGWQRGWPGIHHSISITGGEPLLCHQLLQELLPAL-RHY 116 Query: 112 FEIAVETNGTIE-----PPQGIDWICVS---PKAGCDLKIKGGQE------------LKL 151 I +ETNG + +D++ + P + E +K Sbjct: 117 LPIYLETNGILHGQLAQLLDHVDYVSMDIKLPSTSGYTDLWQAHEEFLRLAASKKTYVKT 176 Query: 152 VFP------QVNVSPENYIGFDFER-FSLQP---------MDGPFLEENTNLAISYCFQN 195 V ++ + E D LQP + + E A Y + Sbjct: 177 VIGTDTEDWEIIRTAELVAAIDSRIPLILQPFTDLKGRVNLSAIRMLEMQETANRYLQE- 235 Query: 196 PKWRLSVQTHKFIG 209 R+ QTHKFIG Sbjct: 236 --VRIIPQTHKFIG 247 >gi|118474370|ref|YP_891426.1| radical SAM domain-containing protein [Campylobacter fetus subsp. fetus 82-40] gi|261886249|ref|ZP_06010288.1| radical SAM domain-containing protein [Campylobacter fetus subsp. venerealis str. Azul-94] gi|118413596|gb|ABK82016.1| radical SAM domain protein [Campylobacter fetus subsp. fetus 82-40] Length = 241 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 17/180 (9%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGR-----EQDRLSAQCRFCDT-DFVG 56 + ++ E F ++QGEG +GR ++F R GCNL + + CDT V Sbjct: 1 MVNVVEYFTSVQGEGKFSGRYSLFIRLGGCNLSCKGFGVKIKSPKTGEILVGCDTIKAVQ 60 Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ----VDVPLIQALNKRGF 112 + + +++ + L +L++E V+TGGEPLL + IQ ++ + Sbjct: 61 TEHFEHNKFDFEALVNLVKETEF-----KPLIVITGGEPLLWYKDEDLIKFIQWCFEQNY 115 Query: 113 EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 E+ ETNG+I + K +K+ E K ++N I + + F Sbjct: 116 EVHFETNGSIFVDFDKFKVYKKCKFAVSVKLAISGEPKS--KRINQKALQAIFANADAFY 173 >gi|304315357|ref|YP_003850504.1| glycyl radical-activating enzyme [Methanothermobacter marburgensis str. Marburg] gi|302588816|gb|ADL59191.1| predicted glycyl radical-activating enzyme [Methanothermobacter marburgensis str. Marburg] Length = 244 Score = 117 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 21/139 (15%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I E+F ++QGEG G+ +F RF+GCNL C +CDT + G Sbjct: 4 PIMEVFSSIQGEGLLVGKRQIFIRFAGCNL-----------NCSYCDTP-ESRDPSCGEE 51 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 + DQL ++E + +TGGEPLL D + + L + +ETNG++ Sbjct: 52 LSADQLLGMVENLV---TPDFHSLSITGGEPLLYPDF-IREFLEDSPWSALLETNGSLPA 107 Query: 125 PQG-----IDWICVSPKAG 138 D+ V K Sbjct: 108 SARRISHFFDYASVDIKTS 126 >gi|29566198|ref|NP_817766.1| gp5 [Mycobacterium phage Rosebush] gi|109521763|ref|YP_655685.1| gp5 [Mycobacterium phage Qyrzula] gi|29424923|gb|AAN01847.1| gp5 [Mycobacterium phage Rosebush] gi|91980707|gb|ABE67425.1| gp5 [Mycobacterium phage Qyrzula] Length = 237 Score = 117 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 72/182 (39%), Gaps = 29/182 (15%) Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI--Q 58 + + E+F TLQGEG +AG F R GCNL C +CDT + + Sbjct: 6 SVLPVSELFGPTLQGEGPYAGVTVQFLRLMGCNL-----------SCSWCDTPYTWDARE 54 Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR----GFEI 114 + D+++ V++GGEPLL QA+ + G E+ Sbjct: 55 HDLNAETTLLAWPDIVDALL-----PDTPLVISGGEPLLHQKHSAFQAVLQHAWRKGCEV 109 Query: 115 AVETNGTIEPPQ----GIDWICVSPKAGCDLKIKGGQELKLV--FPQVNVSPENYIGFDF 168 +ETNGT+ P G VSPK +G Q+ + + + V + ++ Sbjct: 110 HIETNGTLAPLAATVSGTTVFAVSPKLSHAGPHRGRQDAAIADGWADLAVQGKAFLKVVV 169 Query: 169 ER 170 Sbjct: 170 RH 171 >gi|258511917|ref|YP_003185351.1| Radical SAM domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478643|gb|ACV58962.1| Radical SAM domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 253 Score = 117 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 83/240 (34%), Gaps = 57/240 (23%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 + EIF T++GEG AG F R CNL +C +CDT + Sbjct: 28 LPMVEIFETVEGEGTRAGFPTTFVRVFHCNL-----------RCTWCDTPYSYAPERPAF 76 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFE----IAVE 117 + ++A+ +E LTGGEPL+ LI+A+ G + VE Sbjct: 77 HATLREIAEQVEAFGW------PNVCLTGGEPLIHRHKSQLLIEAI--AGIPSVRDVHVE 128 Query: 118 TNGTIEPPQGIDWICVSPKA------GCDLKIKGG-----------------QELKLVF- 153 TNG I+ + S + D K+ E+K V Sbjct: 129 TNGAIDVRPYVRLRDASARLRDVVRFIVDYKLPASGEESRMIGEHLTSLSERDEVKFVIA 188 Query: 154 PQVNVSPENYIGFDF---ERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208 + + + + + P+ + ++ ++ +LS+Q HK I Sbjct: 189 DERDFARALEVMEAHPTRATILMSPVWETMPPRDL---VALILKHRLRDVKLSLQLHKVI 245 >gi|313894807|ref|ZP_07828367.1| radical SAM domain protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312976488|gb|EFR41943.1| radical SAM domain protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 243 Score = 117 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 69/157 (43%), Gaps = 32/157 (20%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQGT--- 60 +I EIF ++QGEG + G VF R GCNL C +CDT +G T Sbjct: 4 NIIEIFSSIQGEGKYVGCRQVFVRLEGCNL-----------DCTYCDTEKEIGRHPTCVV 52 Query: 61 -----------KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 +++ +A L + + G +TGGEPLL VP I+AL+ Sbjct: 53 EMPAGSHELHSYENPLSIETVAALAAQ--VAGGVPHHSLSVTGGEPLLH--VPFIRALSA 108 Query: 110 R-GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 R I +ETNGT+ CVS D+K+ G Sbjct: 109 RIPLPIFLETNGTLYEALAHCIDCVS-YISMDIKLPG 144 >gi|116329391|ref|YP_799111.1| organic radical activating protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330008|ref|YP_799726.1| organic radical activating protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122135|gb|ABJ80178.1| Organic radical activating enzyme [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123697|gb|ABJ74968.1| Organic radical activating enzyme [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 243 Score = 117 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 94/239 (39%), Gaps = 50/239 (20%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 S+ EI+L+L GEG G VF R +GC+L G + +CDT + G Sbjct: 13 SVHEIYLSLSGEGISTGIPTVFVRMAGCSLRCGMAIGKKL----WCDTPYALSPSA-GEE 67 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI---------- 114 ++ ++ + I+E + +LTGGEPL + AL F Sbjct: 68 MDLKRVLNRIQELSPVYTQ----VLLTGGEPLEGGNRDFSLALGNEIFRTRKFSNSYPRA 123 Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKG-GQELKLVFPQVNVSPE-----NYIGF-- 166 VETNG E +G+D D K+ G G E ++ + + + + I F Sbjct: 124 RVETNGA-ESIEGLDQFVF----TLDYKLPGSGMENRMNLENLEIYNKRKNELDEIKFVI 178 Query: 167 ----DFER-------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 DFER P+ G E + + + RLS+QTHK+I Sbjct: 179 RDRNDFERCLEVIKVHELSGNLLASPVQGELSPEILSEWLKSSL-GSRLRLSLQTHKYI 236 >gi|145219296|ref|YP_001130005.1| radical SAM domain-containing protein [Prosthecochloris vibrioformis DSM 265] gi|145205460|gb|ABP36503.1| Radical SAM domain protein [Chlorobium phaeovibrioides DSM 265] Length = 223 Score = 117 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 56/232 (24%), Positives = 87/232 (37%), Gaps = 47/232 (20%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 L I EIF ++QGE +AG F R +GC S CR+CD+ + Sbjct: 5 LLKISEIFRSIQGESSYAGWPCAFIRLAGC-----------SHNCRYCDSLYARNTE--- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 R ++ +TGGEPL Q V L+ L G ++ +ET G Sbjct: 51 ERLTTREVVSRALALKTE------IIEITGGEPLEQPGVHQLMTELCNTGRKVLLETGGF 104 Query: 122 IEPPQGID-----WICVSP-------KAGCD---LKIKGGQELKLVFP-QVNVSPENYIG 165 I GID I + P K + L K G+EL+ F ++ V+ N Sbjct: 105 IPV-AGIDPRVHKIIDLKPPSSGESGKNCMENITLAFKAGKELQKSFEFKMVVADRNDYL 163 Query: 166 FDFERFSLQP--------MDGPFLEENTNLAISYCFQN-PKWRLSVQTHKFI 208 + + + P M E + ++ + R+ +Q HK + Sbjct: 164 WSRDLLRMHPLQKSCTVLMGVVAGELAPAQLADWILEDGLRVRMQLQLHKLL 215 >gi|224372460|ref|YP_002606832.1| radical SAM domain protein [Nautilia profundicola AmH] gi|223589672|gb|ACM93408.1| radical SAM domain protein [Nautilia profundicola AmH] Length = 233 Score = 117 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 91/223 (40%), Gaps = 42/223 (18%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 KL + EIF ++QGEG +AG +VF R GCNL ++ CD+ + + K Sbjct: 5 KLIPVSEIFYSIQGEGKYAGHPSVFVRVGGCNLKCPGFGEKG------CDSYYAVDKSYK 58 Query: 62 GGR--YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVE 117 +V+++ + + ++ + V+TGGEP L PL+ +I VE Sbjct: 59 SEWKLMSVEEIKSEVSKYI----RKDTHLVITGGEPTLFYKQLYPLVVWFEG---QITVE 111 Query: 118 TNGTIEP-----PQGIDW-ICVSPKAGCDLKIKGGQELKLVF-PQVNVSPENYIGFDFER 170 TN T++ P D +S K + G + K V V +P+++ F ++ Sbjct: 112 TNTTVDIDFEKYPAYKDVAFAMSVKLSNSAEEYGKRVKKHVIKSYVKNAPKSFFKFVIDK 171 Query: 171 ----------------FSLQPM--DGPFLEENTNLAISYCFQN 195 P+ D LE+N +C ++ Sbjct: 172 DLNNEIKDITAGINAPVYCMPLGADKEELEKNAPFVFGFCLKH 214 >gi|149187035|ref|ZP_01865342.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter sp. SD-21] gi|148829324|gb|EDL47768.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter sp. SD-21] Length = 244 Score = 117 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 60/154 (38%), Gaps = 40/154 (25%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---------Q 58 EIF ++QGEG GR F R S CNL C +CDT + Sbjct: 14 EIFASVQGEGPSVGRPVAFMRLSRCNL-----------ACVWCDTAYTWHFEGDNRPHRD 62 Query: 59 GTKGGR------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKR 110 G R + +++A I + V+TGGEPLL Q L+ L Sbjct: 63 GVTFERKANQVTLDEEEVAARITQLGQDR------LVITGGEPLLQAQALAKLLDLLPD- 115 Query: 111 GFEIAVETNGTIEPPQ----GIDWICVSPKAGCD 140 + +ETNGT + P ID VSPK Sbjct: 116 -ISVEIETNGTTKAPPRLDIRIDQFNVSPKLAHS 148 >gi|325958051|ref|YP_004289517.1| Radical SAM domain-containing protein [Methanobacterium sp. AL-21] gi|325329483|gb|ADZ08545.1| Radical SAM domain protein [Methanobacterium sp. AL-21] Length = 233 Score = 117 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 59/259 (22%), Positives = 90/259 (34%), Gaps = 74/259 (28%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK +I E+F + QGEG GR +F RFSGCNL C +CDT Sbjct: 1 MKT-NINEVFSSFQGEGTLIGRRQIFVRFSGCNL-----------DCSYCDTP-ESRNPQ 47 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 G + D+L + + TGGEPLL + + + L + F+ +ETNG Sbjct: 48 YGELISTDELYSKVNSII---TPDFHSISFTGGEPLLHSNF-IKKFLEEYEFKSMLETNG 103 Query: 121 TIEPPQG-----IDWICVSPKAG-----------CDLKIKGGQELK----------LVFP 154 T+ +D++ + K DL++K + L+ +V P Sbjct: 104 TLPAELNKIAHLLDYVSLDIKLPEHGASNNYADILDLELKSIKLLRDEEINTYIKVVVMP 163 Query: 155 QVNVS---------PENYIGFDFERFSLQPMDG-PFLEENTNLAISYCFQNPKWRLS--- 201 Q V + LQP+ + T LS Sbjct: 164 QTEVELISSIASRIADEVEKTSELVMVLQPVSPITVWADGTQKLFE---------LSEVA 214 Query: 202 ---------VQTHKFIGIR 211 Q HK + ++ Sbjct: 215 GKYIDVLTIPQVHKLLNVK 233 >gi|296272038|ref|YP_003654669.1| radical SAM domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296096213|gb|ADG92163.1| Radical SAM domain protein [Arcobacter nitrofigilis DSM 7299] Length = 249 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 24/187 (12%) Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGR-----EQDRLSAQCRFCDTDFVG 56 + + EIF T+QGEG + G ++F RF CN E +C CD+ + Sbjct: 1 MLEVNEIFGPTIQGEGKYVGNPSIFIRFGKCNFRCEGFAVEYETPSGVKKCS-CDSFYAV 59 Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALN---KRGF 112 K + +++ ++I + V+TGGEPLL D + L G+ Sbjct: 60 DPAFKDQWHKMNK-NEIINQVKKLEPSYKVDIVITGGEPLLYWKDEEFQEILKYYISNGY 118 Query: 113 EIAVETNGTIEPPQGIDW-----ICVSPKAGC---DLKIKGGQE-LKLVFPQVNVSPENY 163 ++ +ETNG++ ++ +S K LK + +E LK + + E+Y Sbjct: 119 KVTIETNGSLNIDFTKEYQKELIFSMSVKLSNSLEPLKKRVNEETLKKIITN---TKESY 175 Query: 164 IGFDFER 170 + F + Sbjct: 176 LKFVISK 182 >gi|269798253|ref|YP_003312153.1| radical SAM protein [Veillonella parvula DSM 2008] gi|269094882|gb|ACZ24873.1| Radical SAM domain protein [Veillonella parvula DSM 2008] Length = 247 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 82/257 (31%), Gaps = 74/257 (28%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 ++ EIF ++ GEG G + F R CN +C +CDT + + Sbjct: 2 NVIEIFASIDGEGSRQGLLTTFLRLHDCN-----------IRCSYCDTTYSYGIDSVFTE 50 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRG----------- 111 ++A++IE +TGGEPLLQ V LI LN+R Sbjct: 51 MTAAEVANVIESLG------NHRITITGGEPLLQEAAVVELIDELNRRKAETMQDNTSGQ 104 Query: 112 ----------------------FEIAVETNGTIEPPQGID--WICVSPKAGCDLKIKGGQ 147 ++ +ETNGTI P D W K L + Sbjct: 105 AGSTCIIDIDKFDKREMLNDSLYDFNIETNGTIIPSFHRDNVWFTYDYKTPSSLAEESMN 164 Query: 148 E-----------LKLVF---PQVNVSPENYIGFD-FERFSLQPMDGPFLEENTNLAISYC 192 +K V ++ + + + P+ G + I Y Sbjct: 165 VDIFKVATERDLIKFVVGSPEDLDCMRRIIEQYPTVAQIYVSPVWGQIEPAS---IIDYM 221 Query: 193 FQNP--KWRLSVQTHKF 207 R +Q HKF Sbjct: 222 KAYNLQNVRFQLQIHKF 238 >gi|312136463|ref|YP_004003800.1| radical sam domain protein [Methanothermus fervidus DSM 2088] gi|311224182|gb|ADP77038.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088] Length = 232 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 58/255 (22%), Positives = 93/255 (36%), Gaps = 67/255 (26%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK + EIF ++QGEG G+ +F RF+GCNL C +CDT Sbjct: 1 MKA-PVYEIFSSIQGEGLLVGKRQIFVRFAGCNL-----------DCIYCDTP-KSRDPK 47 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 G ++VD+L ++ + LTGGEPLL D + + L K F +ETNG Sbjct: 48 NGKLFSVDELYKSVKSLV---TPDLHSICLTGGEPLLYADF-IKKFLKKCEFNALLETNG 103 Query: 121 TIE-----PPQGIDWICVSPKAGCDLKIKGGQEL------------------KLV--FPQ 155 ++ + ID+ A D+K+ + K V + + Sbjct: 104 SLPDNAKVISKFIDY------AAVDIKLPRYITVMGEEIIEKEIETINILMAKKVYTYCK 157 Query: 156 VNVSPENYIGFDFE---------------RFSLQPMD----GPFLEENTNLAISYCFQNP 196 + V P + + + LQP ++ ++ Sbjct: 158 IVVLPSTKVKSLKKVVKKIRDGIVNPLGLQIVLQPSSPLKNWIGKQKRLLKMSEIIGKDF 217 Query: 197 KWRLSVQTHKFIGIR 211 R+ Q HK + R Sbjct: 218 NVRIIPQIHKILKFR 232 >gi|126642575|ref|YP_001085559.1| putative organic radical activating enzyme [Acinetobacter baumannii ATCC 17978] gi|126388459|gb|ABO12957.1| putative organic radical activating enzyme [Acinetobacter baumannii ATCC 17978] Length = 124 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 29/138 (21%) Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73 QGE +G VF R +GC L +C +CDT + G R +++ + + Sbjct: 2 QGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGERLSLEHIIET 47 Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132 E + + Y +TGGEPL Q + + L+Q L GF++++ET+G ++ + Sbjct: 48 AE------KYQTPYICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSGALDVSR------ 95 Query: 133 VSPKAG--CDLKIKGGQE 148 V P+ DLK E Sbjct: 96 VDPRVSKVLDLKTPTSGE 113 >gi|329940403|ref|ZP_08289684.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptomyces griseoaurantiacus M045] gi|329300464|gb|EGG44361.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptomyces griseoaurantiacus M045] Length = 247 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 75/205 (36%), Gaps = 34/205 (16%) Query: 6 IKEIF----LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG-- 59 + E F T QGEG G A+F R S CNL R CDT + Sbjct: 21 VAECFGTEVPTFQGEGPSCGHPALFIRLSRCNLTCTR-----------CDTKYTWDWSRF 69 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVE 117 +A L+ V+TGGEPL+Q VPLI+ L G I E Sbjct: 70 DPHEESTRQSVAGLVA---WATSSPVELVVITGGEPLIQQARLVPLIRGLIAVGKRIEFE 126 Query: 118 TNGTIEPPQGID----WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173 TNGTI P + VSPK G +E K + P + E ++ F Sbjct: 127 TNGTIAPTPELAADGVRFNVSPKLASF----GVKETKSIVP---AALEAFVASGRAAFKF 179 Query: 174 QPMDGPFLEENTNLAISYCFQNPKW 198 L+ LA ++ P W Sbjct: 180 VASTVDDLDRIAELADAHRLT-PVW 203 >gi|78186318|ref|YP_374361.1| radical activating enzyme, putative [Chlorobium luteolum DSM 273] gi|78166220|gb|ABB23318.1| radical activating enzyme, putative [Chlorobium luteolum DSM 273] Length = 223 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 57/238 (23%), Positives = 85/238 (35%), Gaps = 57/238 (23%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I EIF ++QGE AG F R +GC S CR+CDT + + Sbjct: 4 TILQISEIFHSIQGESSFAGWPCTFIRLAGC-----------SHGCRYCDTTYAKTAERR 52 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 + D I+E +TGGEPL Q V L+ AL G + +ET G Sbjct: 53 ------LSIGDTIDEARR---YHAHLIEVTGGEPLEQPAVHKLLHALCDGGGGVMLETGG 103 Query: 121 TIEP-------PQGIDWICVS---PKAGC----DLKIKGGQ------ELKLVFPQVNVSP 160 + + ID S K C D+ + G+ E K+V Sbjct: 104 FLSVRDVDPRVHKVIDLKPPSSGRDKENCMENIDIALNAGEGERKRYEFKIVA----ADR 159 Query: 161 ENYIGF----------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 E+Y+ + + P+ G LA R+ +Q H++I Sbjct: 160 EDYLWARGILKDTRLAEACTVMMGPIAGTIHPS--ELAGWILEDRLHVRMQLQLHRYI 215 >gi|326388331|ref|ZP_08209927.1| radical SAM family protein [Novosphingobium nitrogenifigens DSM 19370] gi|326207063|gb|EGD57884.1| radical SAM family protein [Novosphingobium nitrogenifigens DSM 19370] Length = 248 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 47/151 (31%), Positives = 62/151 (41%), Gaps = 30/151 (19%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 E+F +LQGEG GR +VF R S CNL CR+CDT + + Sbjct: 14 ELFASLQGEGASLGRPSVFVRLSRCNL-----------ACRWCDTAYTWRFSGDNRPHRD 62 Query: 68 DQLADLIEEQWITGE---------KEGRYCVLTGGEPLLQV-----DVPLIQALNKRGFE 113 D + Q E V+TGGEPLLQ + ++A N+ Sbjct: 63 DIAFERTANQITADEGDIATRILAFGVPRLVVTGGEPLLQAPALARMIAAVRAGNEA-MH 121 Query: 114 IAVETNGTIEPPQG----IDWICVSPKAGCD 140 I +ETNG++ P ID VSPK Sbjct: 122 IEIETNGSVAPTPALDALIDQYNVSPKLAHS 152 >gi|307721837|ref|YP_003892977.1| hypothetical protein Saut_1922 [Sulfurimonas autotrophica DSM 16294] gi|306979930|gb|ADN09965.1| conserved hypothetical protein [Sulfurimonas autotrophica DSM 16294] Length = 252 Score = 115 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 9/131 (6%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS----GREQDRLSAQCRFCDTDFV-GI 57 + + E F ++QGEG + G ++F RF GCN+ +E A+ CDT + Sbjct: 1 MIYLVEHFYSIQGEGKYVGTPSLFFRFGGCNMKCEGFGCKETASDGAEVLGCDTVYAVNK 60 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFE 113 + +++ +L+ + E VLTGGEPL+ + ++ L ++G + Sbjct: 61 EHFLQNWIPINKAQELLSILSLYDLPEAVDIVLTGGEPLIYANDEIFVDFLEVLVEQGHQ 120 Query: 114 IAVETNGTIEP 124 I ETNG++ Sbjct: 121 ITFETNGSLAV 131 >gi|302392164|ref|YP_003827984.1| radical SAM domain protein [Acetohalobium arabaticum DSM 5501] gi|302204241|gb|ADL12919.1| Radical SAM domain protein [Acetohalobium arabaticum DSM 5501] Length = 240 Score = 115 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 88/252 (34%), Gaps = 64/252 (25%) Query: 1 MKL----YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG 56 M++ + EIF ++ GEG AG + F R +GCNL +C +CDT + Sbjct: 1 MEMEGVKLPVVEIFNSISGEGISAGEIVTFVRVAGCNL-----------RCDYCDTMYSY 49 Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----VPLIQALNKRGF 112 + Q+ + I + + TGGEPL + +PL L K+GF Sbjct: 50 QD-EEYELLTPQQIVNRI------NNFGTQQVICTGGEPLEEDKPKRYLPL--YLAKQGF 100 Query: 113 EIAVETNGTIEPPQG----------------IDWICVSPKAGCDLKIKG------GQELK 150 E+ +ETNG+ +D C S E+K Sbjct: 101 EVRIETNGSWSVYNQQELQKFGLDGEGINYTLDIKCPSSNMAEYNLFTNLEQLGLNDEIK 160 Query: 151 LVFPQVNVSPENYIGFDFERFSL--QPM----DGPFLEENTNLAISYCFQN--------P 196 V + D + L Q + F E +S ++ Sbjct: 161 FVVQDKSDIDYALKVIDDYKNELSKQEIVINFSPVFEELAPKKLVSILQEHQTYFAQFNL 220 Query: 197 KWRLSVQTHKFI 208 K RLS+Q HK I Sbjct: 221 KVRLSIQLHKLI 232 >gi|223038702|ref|ZP_03608995.1| FO synthase subunit 2 2 [Campylobacter rectus RM3267] gi|222880104|gb|EEF15192.1| FO synthase subunit 2 2 [Campylobacter rectus RM3267] Length = 254 Score = 115 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 11/134 (8%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL-----SAQCRFCDTDFV 55 M L ++ E FL++QGEG +GR+A+F RF+GCNL R CDT Sbjct: 1 MSL-NLVENFLSIQGEGASSGRLAIFLRFAGCNLNCAGFGVRAISPKTGETLVGCDTVRA 59 Query: 56 GIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALN---KR 110 G + + I + ++ V+TGGEPLL + L+ L+ Sbjct: 60 VFTGHFSYQKISRADELAKITQNLSVNLRQKPILVITGGEPLLHHKNRILLDFLDFATSE 119 Query: 111 GFEIAVETNGTIEP 124 G+E ETNGTIE Sbjct: 120 GYEPHFETNGTIEV 133 >gi|325279462|ref|YP_004252004.1| Radical SAM domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324311271|gb|ADY31824.1| Radical SAM domain protein [Odoribacter splanchnicus DSM 20712] Length = 267 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 86/226 (38%), Gaps = 45/226 (19%) Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71 T+QGEG G ++F R +GCNL + + CD+ + Q + +V+ + Sbjct: 33 TVQGEGKLCGIPSLFVRLAGCNLQCHWQTSDGLS--SPCDSAYAAYQLKDTRQVSVEAIY 90 Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALN-KRGFEIAVETNGTIEPPQG- 127 + + R+ VLTGGEPLLQ L Q L F + +ETN T+ P+ Sbjct: 91 TTLLQ----NAGPIRHIVLTGGEPLLQVKELKALCQKLKSDYRFHLTLETNATLFDPELA 146 Query: 128 --IDWICVSPKAG------CDLKIKGGQ------------------ELKLVF------PQ 155 ID +SPK L I+ +LK V+ + Sbjct: 147 RYIDLFSLSPKLSSSYTGASPLSIQRLNPECIQQYISSARQYQKDFQLKFVYACDEDIDE 206 Query: 156 VNVSPENYIGFDFERFSLQPMDG--PFLEENTNLAISYCFQNPKWR 199 + + + L P+ G + N + YC +N WR Sbjct: 207 IQQLLSVLQAWKNDDILLMPLGGTPEIMRRNMRKTLEYCIRN-GWR 251 >gi|212223604|ref|YP_002306840.1| organic radical activating enzyme [Thermococcus onnurineus NA1] gi|212008561|gb|ACJ15943.1| organic radical activating enzyme [Thermococcus onnurineus NA1] Length = 253 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 59/265 (22%), Positives = 94/265 (35%), Gaps = 68/265 (25%) Query: 1 MKLYSIKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-F 54 MKL + E+F + QGEGG GR +F RF+GC+L C +CD+ F Sbjct: 1 MKLI-MAEVFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------NCVWCDSKEF 48 Query: 55 VGIQGTKGGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--V 99 + RY V+ L ++++ + TGGEP LQ Sbjct: 49 IDASKVLRWRYEVEPFTGKFEYKPNPASLGEVVDAILRLDTGDIHSISYTGGEPTLQVRP 108 Query: 100 DVPLIQALNKRGFEIAVETNGTIEPP----------QGIDWICVSPKAGCDLKIKGGQEL 149 L++ +++ GF +ET+G + ID + KA D K +E+ Sbjct: 109 LKALMERMHELGFSNFLETHGGLPELIKEVAHLTDYASIDIKDETAKATEDWKALVLREV 168 Query: 150 KLVFPQVNVSPENYIGFDFER-------------------FSLQP-----MDGPFLEENT 185 + + E Y + +QP + P L E Sbjct: 169 ESIRILKEAGAETYAKLVVTKDTKIENVRWYASLLKGLAPLVIQPREPIDISQPKLMEFY 228 Query: 186 NLAISYCFQNPKWRLSVQTHKFIGI 210 A + LS Q HK++ + Sbjct: 229 REA-ALIMGRKNVGLSFQVHKYLNV 252 >gi|261403228|ref|YP_003247452.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7] gi|261370221|gb|ACX72970.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7] Length = 243 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 49/254 (19%), Positives = 84/254 (33%), Gaps = 62/254 (24%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV--------GI 57 I+EIF ++ GEG + GR +F RF+GC L C +CD + Sbjct: 2 IREIFNSIMGEGKYIGRRFIFIRFAGCPL-----------NCLYCDEEHKKHVNLVEQYP 50 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIA 115 K + N++ D+I+ + TGGEPLL + + L G+ Sbjct: 51 SSGKFEKQNLESEEDIIKAVNKLKTPDLFSVSFTGGEPLLYHKEIKEISKILKNLGYRTF 110 Query: 116 VETNGTIE-PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS-- 172 +E+NG D + K K G +E K ++ + + + + ++ Sbjct: 111 LESNGIFPERVFHFDIASIDIKLKDHFKNIGEEEYKKIYKNELKTIKKFYNMGTDVYAKI 170 Query: 173 ------------------------------------LQPMDGPFLEENTNLAISYCFQNP 196 +QP L + + N Sbjct: 171 VITKDSKINDLVEISKDLSDIGDVMLCIQPATPINNIQPPSQKTLFKIMEACGEHLKDNV 230 Query: 197 KWRLSVQTHKFIGI 210 L++Q HK + I Sbjct: 231 M--LTLQIHKILNI 242 >gi|111222166|ref|YP_712960.1| mycobacteriophage protein Gp5 [Frankia alni ACN14a] gi|111149698|emb|CAJ61390.1| Mycobacteriophage protein Gp5 [Frankia alni ACN14a] Length = 221 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 23/158 (14%) Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73 QGEG AGR+A F R GCNL C +CDT + G R+++ Sbjct: 2 QGEGPAAGRLATFVRLGGCNL-----------SCSWCDTSYTW----DGARFDLRTEITS 46 Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNGTIEP-PQGI 128 + I + V+TGGEPLL + P L++ L ++ I VETNGT+ P P + Sbjct: 47 TAVETIAAKVTTDLVVITGGEPLLHQERPGWTALLRTLTQQQRAIHVETNGTVRPTPMSL 106 Query: 129 DWI---CVSPKAGCDLKIKGGQELKLVFPQVNVSPENY 163 + VSPK +G Q +L ++ ++ Sbjct: 107 QHVAMWVVSPKLRNAGTHRGRQRARLATEWPALAAQHD 144 >gi|292669396|ref|ZP_06602822.1| radical SAM domain protein [Selenomonas noxia ATCC 43541] gi|292648957|gb|EFF66929.1| radical SAM domain protein [Selenomonas noxia ATCC 43541] Length = 243 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 89/252 (35%), Gaps = 69/252 (27%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-------FVGI 57 +I EIF ++QGEG + G +F R GCNL C +CDT+ + Sbjct: 4 NIIEIFSSIQGEGKYVGCRQIFVRLEGCNL-----------DCTYCDTENEIGRHPHCMV 52 Query: 58 QGTKG--------GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 + G + + A++I I G+ +TGGEPLL VP I+ L Sbjct: 53 EEDAGSHALISYENPLSAQRTAEIIAR--IVGDVPHHSLSMTGGEPLLH--VPFIRELAA 108 Query: 110 R-GFEIAVETNGTIEP-----PQGIDWICVSPKAGCDLKIKGGQE---------LKLVFP 154 + +ETNGT++ ID I + K L + K V+ Sbjct: 109 HVHLPLFLETNGTLDQALAECIDCIDIISMDIKLPDVLSVPVWDAHARFLAVARAKDVYV 168 Query: 155 QVNVSPENYIG------------FDFERFSLQPM---------DGPFLEENTNLAISYCF 193 ++ V+ E LQP+ L LA+ + Sbjct: 169 KIVVAAETADDDIVTAARIVADTAPETLLILQPVTPYGGCTAPTPEHLLAFQRLALRHV- 227 Query: 194 QNPKWRLSVQTH 205 R+ QTH Sbjct: 228 --SDVRIIPQTH 237 >gi|18311650|ref|NP_558317.1| coenzyme PQQ synthesis protein, conjectural [Pyrobaculum aerophilum str. IM2] gi|18159047|gb|AAL62499.1| coenzyme PQQ synthesis protein, conjectural [Pyrobaculum aerophilum str. IM2] Length = 222 Score = 114 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 56/141 (39%), Gaps = 25/141 (17%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 + EIF +LQGEG + GR AVF R +GC +C +CDT + G Sbjct: 8 RVLEIFASLQGEGINLGRPAVFVRLAGCP-----------IRCIYCDTKYSW-DFNAGVE 55 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQALNKRGFEIAVETNGT 121 V+++ + G EPL+ L AL G + VET+G Sbjct: 56 MGVEEIVAKALALSVVGHVVVTGG-----EPLIWQRRGLEELACALRALG-SVEVETSGA 109 Query: 122 IEPPQ----GIDWICVSPKAG 138 P +D+ VSPK Sbjct: 110 YPPTPELDRCVDFYDVSPKLS 130 >gi|256810231|ref|YP_003127600.1| Radical SAM domain protein [Methanocaldococcus fervens AG86] gi|256793431|gb|ACV24100.1| Radical SAM domain protein [Methanocaldococcus fervens AG86] Length = 243 Score = 114 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 89/258 (34%), Gaps = 72/258 (27%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-----QGT 60 IKEIF ++ GEG + GR +F RF+GC L +C +CD + + Sbjct: 2 IKEIFSSIMGEGKYIGRRFIFVRFAGCPL-----------KCIYCDEESKSYLNRVEKIP 50 Query: 61 KGGRYNV---DQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115 G + + D++ + TGGEPLL + + L +G+ Sbjct: 51 GSGEFETLKNMDVEDVVNAVDKLRTPDLFAVSFTGGEPLLYSKKIKEIAEILKDKGYRTF 110 Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGG------QELK------------------- 150 +E+NG P+ + + + A D+K+K E K Sbjct: 111 LESNGLF--PEKVFYFDI---ASIDIKLKEHFEFIKDNEYKKLYKKELETIKKLYNLNSD 165 Query: 151 -----LVFPQVNVSPENYIGFDFE-----RFSLQPM---------DGPFLEENTNLAISY 191 ++ ++ I D +QP+ L E Y Sbjct: 166 VYAKVVIMENTDIEDVKRIAKDLSDIGDITLCIQPVTPNGDIKSPSQRKLFEIMEACGEY 225 Query: 192 CFQNPKWRLSVQTHKFIG 209 N L++Q HK++G Sbjct: 226 LKDNVM--LTIQMHKYLG 241 >gi|332179391|gb|AEE15080.1| Radical SAM domain protein [Thermodesulfobium narugense DSM 14796] Length = 216 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 98/239 (41%), Gaps = 55/239 (23%) Query: 3 LYSIKEIFLTLQGEGGHA--GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + +I IF ++ GE G G R GCNL +CR+CDT Sbjct: 1 MIAIHSIFESISGEVGFMPQGSWCTIVRLQGCNL-----------RCRWCDTKDSQSIEA 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119 K ++D++ D + ++TGGEPL+Q + + LI L +R + +ETN Sbjct: 50 KY-MLSIDEVIDR---------CKNHKVLITGGEPLIQEETLKLIDRLIERHHFVQIETN 99 Query: 120 GTIEPPQGID----WIC--VSPKAGCDLKIKGGQE-----------LKLVFPQVNVSPEN 162 G+I P G W+ P +G ++ +E +KLV E Sbjct: 100 GSIFLPSGYSSDCGWVVDYKGPSSGMMDRMPSFEEFIDNWIEHRVIVKLVVDNSKEDLEF 159 Query: 163 YIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRL------SVQTHKFIGI 210 + +F++ P+D E+ + +++ + + +L S+Q HK +G+ Sbjct: 160 VFQILSKMYGLFQFAISPLDAK-GEKILD-IVNFIRERDE-KLLGDLIFSIQMHKVVGL 215 >gi|254446154|ref|ZP_05059630.1| radical SAM domain protein, putative [Verrucomicrobiae bacterium DG1235] gi|198260462|gb|EDY84770.1| radical SAM domain protein, putative [Verrucomicrobiae bacterium DG1235] Length = 208 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 48/202 (23%), Positives = 68/202 (33%), Gaps = 32/202 (15%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG---GRYNVDQLADLIEE 76 GR A F R GC + C +CD+ R + LAD + Sbjct: 1 MGRSAYFIRLFGCPV-----------HCPWCDSAGTWHPDYVPKNVERVTPEALADAAKA 49 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP- 135 + V+TGGEP++ L +AL RG +ET+G E DWI +SP Sbjct: 50 SG------AEFAVVTGGEPVIHDLKALSEALAARGIGRHLETSGGFEIRGDFDWITLSPK 103 Query: 136 --KAGCDLKIKGGQELKLVFPQVNVSPENYIG------FDFERFSLQP-MDGPFLEENTN 186 K ++ E KL+ N S E +I + L P Sbjct: 104 WQKEPLVENLEKASEFKLIVEDEN-SIEGWIRSVGGFFVSDKPVWLHPEWSQRGNAAVLE 162 Query: 187 LAISYCFQ-NPKWRLSVQTHKF 207 + +R Q HK Sbjct: 163 SITRTVKELGDPYRAGFQLHKL 184 >gi|85373083|ref|YP_457145.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter litoralis HTCC2594] gi|84786166|gb|ABC62348.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter litoralis HTCC2594] Length = 245 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 56/233 (24%), Positives = 77/233 (33%), Gaps = 47/233 (20%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---------Q 58 EIF ++QGEG AG F R S CNL C +CDT + Sbjct: 15 EIFASVQGEGLSAGAPVAFVRLSRCNL-----------ACVWCDTAYTWHFEGDTRPHRS 63 Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118 G R D + + V+TGGEPL+Q + +ET Sbjct: 64 GETFERKANQVSLDPADVAERIAALGQKRLVITGGEPLMQGGPLAELLELLPDMTVEIET 123 Query: 119 NGTIEPPQ----GIDWICVSPKAGCD-------LKIKGGQE--------LKLVFPQVNVS 159 NGT + P ID VSPK L + K V + + Sbjct: 124 NGTTKAPPRLDIRIDQYNVSPKLAHSGNPAELALITERLDSYALDDRAFFKFVIAEPSDV 183 Query: 160 PE-----NYIGFDFERFSLQP--MDGPFLEENTNLAISYCFQNPKWRLSVQTH 205 E +R L P D L E + C ++ +R+S + H Sbjct: 184 EEVLTLQRAHAIPAKRIFLMPEGTDSETLREREQWLVPLCLEH-GFRMSDRLH 235 >gi|282850491|ref|ZP_06259870.1| radical SAM domain protein [Veillonella parvula ATCC 17745] gi|282579984|gb|EFB85388.1| radical SAM domain protein [Veillonella parvula ATCC 17745] Length = 251 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 58/261 (22%), Positives = 84/261 (32%), Gaps = 78/261 (29%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 ++ EIF ++ GEG G + F R CN +C +CDT + + Sbjct: 2 NVIEIFASIDGEGSRQGLLTTFLRLHDCN-----------IRCSYCDTTYSYGIDSVFTE 50 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRG----------- 111 V ++AD+IE +TGGEPLLQ V LI LN+R Sbjct: 51 MTVAEVADVIESLG------NHRITITGGEPLLQEAAVVELIDELNRRKALKIQDSPSSQ 104 Query: 112 --------------------------FEIAVETNGTIEPPQGID--WICVSPKAGCDLK- 142 ++ +ETNGTI P D W K L Sbjct: 105 SDLTRINDVDKDVDKFDKRKIPNISYYDFNIETNGTIIPSFHRDNVWFTYDYKTPSSLAE 164 Query: 143 -------IKGGQE---LKLVF---PQVNVSPENYIGFD-FERFSLQPMDGPFLEENTNLA 188 K E +K V ++ + + + P+ G + Sbjct: 165 ESMNIDIFKVATERDLIKFVVGSPEDLDCMRRIISKYSTVAQIYVSPVWGQIEAAS---I 221 Query: 189 ISYCFQNP--KWRLSVQTHKF 207 I Y R +Q HKF Sbjct: 222 IDYMKTYNLQNVRFQLQIHKF 242 >gi|14521605|ref|NP_127081.1| coenzyme PQQ synthesis protein III related [Pyrococcus abyssi GE5] gi|5458824|emb|CAB50311.1| Radical SAM family protein [Pyrococcus abyssi GE5] Length = 254 Score = 113 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 60/259 (23%), Positives = 94/259 (36%), Gaps = 69/259 (26%) Query: 8 EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 EIF + QGEGG GR +F RF+GC+L +C +CD+ I +K Sbjct: 8 EIFNSWQGEGGSVEGSAFGRRQIFIRFAGCDL-----------RCSWCDSK-AFIDASKV 55 Query: 63 GRYNVD---------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQ 105 R+ ++ L ++I+ + TGGEP LQ+ L++ Sbjct: 56 KRWRIEVEPFSRKFEYRENPASLDEVIKVVLSLDTGDVHSISYTGGEPTLQIKGLKALMK 115 Query: 106 ALNKRGFEIAVETNGTIEPP----------QGIDWICVSPKAGCDLKIKGGQEL------ 149 L + GF+ +ET+G +D S KA D + +E+ Sbjct: 116 ELKEVGFDNFLETHGGFPEFIREVAHLTDYASVDIKDESAKATKDWRSLVLREIESIRIL 175 Query: 150 ---------KLVFPQ----VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY----- 191 KLV Q NV + ++QP + P L + Y Sbjct: 176 KGAGARVYAKLVVTQETKLENVRWYAELLKGLAPLAIQPRE-PIDIPMQKLMLLYNEASR 234 Query: 192 CFQNPKWRLSVQTHKFIGI 210 LS Q HK++ + Sbjct: 235 ILGRKNVGLSFQVHKYLKV 253 >gi|242398853|ref|YP_002994277.1| Organic radical activating enzyme, radical SAM superfamily [Thermococcus sibiricus MM 739] gi|242265246|gb|ACS89928.1| Organic radical activating enzyme, radical SAM superfamily [Thermococcus sibiricus MM 739] Length = 251 Score = 113 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 59/262 (22%), Positives = 95/262 (36%), Gaps = 71/262 (27%) Query: 6 IKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-FVGIQG 59 + EIF + QGEGG GR +F RF+GC+L +C +CD+ ++ Sbjct: 3 LVEIFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------KCWWCDSANYIIASK 51 Query: 60 TKGGRYNVDQ-------------LADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLI 104 RY V+ +++ + TGGEP LQ L+ Sbjct: 52 VPKWRYEVEPFTGKFEYKPNPANFEEVVSAILHLDTGDIHSISYTGGEPTLQTRNLSTLM 111 Query: 105 QALNKRGFEIAVETNGTIE-----PPQGIDWICVSPK-----AGCDLKIKGGQEL----- 149 + +++ GF+ +ETNG+ +D+ V K A D K +E+ Sbjct: 112 KKMHELGFKNFLETNGSRPERINDIAHLVDYASVDIKDATARATEDWKNLVLKEVESIRI 171 Query: 150 ----------KLVFPQVNVSPENYIGFDFERFS------LQPMDGPFLEENTNLAISY-- 191 KLV Q + E + + + +QP + P T L Y Sbjct: 172 LKRSGVKTYAKLVVTQN--TKEEDVKWYAKLLKGQAPIVIQPRE-PIEMSQTQLMRLYNT 228 Query: 192 ---CFQNPKWRLSVQTHKFIGI 210 LS Q HK++ + Sbjct: 229 AAKIMGRENVGLSFQVHKYLNV 250 >gi|218288587|ref|ZP_03492864.1| Radical SAM domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218241244|gb|EED08419.1| Radical SAM domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 250 Score = 113 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 84/241 (34%), Gaps = 57/241 (23%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + EIF T++GEG AG F R CNL +C +CDT + Sbjct: 24 TLPMVEIFETVEGEGTKAGFPTTFVRVFHCNL-----------RCTWCDTPYSYAPERPA 72 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFE----IAV 116 + ++A +E LTGGEPL+ LI+A+ G E + + Sbjct: 73 FHATLREIAQQVEAFGW------PNVCLTGGEPLIHRHKSQLLIEAI--AGIEWVRDVHI 124 Query: 117 ETNGTIEPPQGIDWICVS------PKAGCDLKIKGG-----------------QELKLVF 153 ETNG I+ + + S + D K+ E+K V Sbjct: 125 ETNGAIDVRPFVRFRDASTRLREVVRFIVDYKLPASGEESRMIGEHLTSLSERDEVKFVI 184 Query: 154 -PQVNVSPENYIGFDF---ERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKF 207 + + + + + P+ + ++ ++ +L++Q HK Sbjct: 185 ADERDFARALEVMEAHPTRATILMSPVWETMPPRDL---VALILKHRLRDVKLNLQLHKV 241 Query: 208 I 208 I Sbjct: 242 I 242 >gi|134299611|ref|YP_001113107.1| radical SAM domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052311|gb|ABO50282.1| Radical SAM domain protein [Desulfotomaculum reducens MI-1] Length = 247 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 30/164 (18%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT------DFVGIQGT 60 EIF ++QGEG + G +F RF+GCN +C FCDT ++ ++ T Sbjct: 7 VEIFSSVQGEGPYVGLRQIFIRFAGCN-----------WKCAFCDTPTNPRPEYFTMEKT 55 Query: 61 KGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKR 110 G R ++L++LI++ + LTGGEPL+ D L+ AL Sbjct: 56 PGQRDFIQVANPVKPERLSELIKQYY--NLSHHHSISLTGGEPLIYHDYITRLVPALQGT 113 Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154 I +ETNGT+ P + I + D+K++ + K + Sbjct: 114 RKGIYLETNGTL-PEELASVINLCNMISMDIKLESATKEKTPWE 156 >gi|315636551|ref|ZP_07891787.1| radical SAM domain protein [Arcobacter butzleri JV22] gi|315479200|gb|EFU69897.1| radical SAM domain protein [Arcobacter butzleri JV22] Length = 191 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 60/158 (37%), Gaps = 20/158 (12%) Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGR-----EQDRLSAQCRFCDTDFVG 56 + I EIF T+QGEG G ++F RF CN E +C CD+ + Sbjct: 1 MLEINEIFGPTIQGEGKLVGTPSIFIRFGKCNFSCTGFGVIYETPSGIKKCA-CDSYYAV 59 Query: 57 IQGTKGGRYNVDQLADLIEEQWIT----GEKEGRYCVLTGGEPLLQVDVPLIQALNKR-- 110 + K D++ E V+TGGEPLL + Q L K Sbjct: 60 DKEFKDTWTKYQSYNDIVAEVDNLISTYNYNYKIDIVITGGEPLLYWNKKEFQKLLKHYI 119 Query: 111 --GFEIAVETNGTIEPPQGIDW-----ICVSPKAGCDL 141 G ++ +ETN ++ D+ +S K L Sbjct: 120 ENGHKVTIETNASLNINFEFDYQKEILFSMSVKLSNSL 157 >gi|56963892|ref|YP_175623.1| organic radical activating enzyme [Bacillus clausii KSM-K16] gi|56910135|dbj|BAD64662.1| organic radical activating enzyme [Bacillus clausii KSM-K16] Length = 217 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 75/223 (33%), Gaps = 48/223 (21%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R GC+ +CR+CD+ F K + +++ + ++ Sbjct: 2 IGQKTMFVRTGGCDY-----------RCRWCDSAFTWDGSEKSEPLSAEEIIERLDSLCE 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136 G + ++GG P + + L+ LN++G A+ET G+I +D + VSPK Sbjct: 51 NGYS---HVTISGGNPAIHKGIGELVALLNEKGVATAIETQGSIFQCWINRVDEVTVSPK 107 Query: 137 AGCDLKIKGGQELKLVFPQVNV------------SPENYIGFDFER-----FSLQ----- 174 +L L Q+ + Y +R F LQ Sbjct: 108 PPSSGMETDWTKLDLFLQQLQAPAVSLKVVVFDDADYQYAKHVHKRYPTVPFYLQTGNED 167 Query: 175 ------PMDGPFLEENTNLAISYCFQN---PKWRLSVQTHKFI 208 P + + R+ Q H ++ Sbjct: 168 FAEKEDPRFLEKRMGAYEALVEKALADKEMNNVRVLPQLHTWL 210 >gi|87200860|ref|YP_498117.1| radical SAM family protein [Novosphingobium aromaticivorans DSM 12444] gi|87136541|gb|ABD27283.1| Radical SAM [Novosphingobium aromaticivorans DSM 12444] Length = 247 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 45/151 (29%), Positives = 64/151 (42%), Gaps = 30/151 (19%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 E+F +LQGEG GR +VF R S CNL CR+CDT + + R + Sbjct: 13 EVFSSLQGEGPGMGRPSVFVRLSRCNL-----------ACRWCDTAYTW-RFAGDNRPHR 60 Query: 68 DQLA------DLIEEQWITGE----KEGRYCVLTGGEPLLQ----VDVPLIQALNKRGFE 113 D++A L+ + T V+TGGEPLLQ + + + Sbjct: 61 DEVAFEKAGNQLVMSEEDTAALILVHPEDRLVITGGEPLLQGAALARLVALLKAERPALH 120 Query: 114 IAVETNGTIEPPQG----IDWICVSPKAGCD 140 + +ETNGT+ +D VSPK Sbjct: 121 VEIETNGTVAVHPALDPLVDQFNVSPKLSHS 151 >gi|315645649|ref|ZP_07898773.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Paenibacillus vortex V453] gi|315279127|gb|EFU42437.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE [Paenibacillus vortex V453] Length = 224 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 15/144 (10%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GR +F R +GC+ +C +CD+ F G+ + D+ +E + Sbjct: 3 VGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAKDSISHMSADDIWQELYR 50 Query: 80 TGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + L+GG P LL L+ L++ G +AVET G+ + +D + +SPK Sbjct: 51 LGGERFDHVTLSGGNPALLSQLGSLVNELHRHGITVAVETQGSRWQDWLNEVDEVTISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQVNVSP 160 +L + +++ P Sbjct: 111 PPSSGMATDWGKLDDIISRLSGRP 134 >gi|315452915|ref|YP_004073185.1| Radical SAM domain protein [Helicobacter felis ATCC 49179] gi|315131967|emb|CBY82595.1| Radical SAM domain protein [Helicobacter felis ATCC 49179] Length = 242 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 62/148 (41%), Gaps = 13/148 (8%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQ 58 E F +LQGEG G+ A+F R GCN G + D + CD+ + Sbjct: 1 MTLPFVESFYSLQGEGSCVGQPAIFIRLGGCNFKCTGFGVQSDIEGKKVLGCDSAYAIYP 60 Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEI 114 K N Q +L+++ VLTGGEP L P ++ L KRG I Sbjct: 61 NAKWQYLNSTQ--ELLDKLPPFNSNRPPLIVLTGGEPSLHFKNPILLEALEILLKRGHGI 118 Query: 115 AVETNGTIE----PPQGIDWICVSPKAG 138 VE+NG++ PP +SPK Sbjct: 119 WVESNGSVFFDFNPPLDSLHFTLSPKLS 146 >gi|325294503|ref|YP_004281017.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064951|gb|ADY72958.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 224 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 99/242 (40%), Gaps = 52/242 (21%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 +I E+F +LQGEG G + F R SGC S C++CDT + K Sbjct: 3 SSIAISELFTSLQGEGLDLGAPSFFIRISGC-----------SIGCKYCDTKYSW---KK 48 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRG--FEIAVET 118 G +++D L + + I ++TGGEP+ + ++ LI+ L+ +I +ET Sbjct: 49 GKLWDIDSLVKEVLKSKIPE------VIVTGGEPVEEKNLSILIKRLSDLETVRKITLET 102 Query: 119 NGTI---EPPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 G I + I +SPK G D + ++ + QV + Y D E Sbjct: 103 CGHIFRDDLKYPKLKIVLSPKPPTMGVDFPTETLEKFLTTYEQVYIKFAAYDQKDLEVIK 162 Query: 173 ---------------LQPMDGPFLEEN--TNLAISYCFQNPKW------RLSVQTHKFIG 209 +QP++ PF + + + + K+ ++ Q HK IG Sbjct: 163 EFAYKNKNLIRAPIVIQPLEVPFEDYSYTSKRIFELVISDRKFINDFEIKIIPQIHKLIG 222 Query: 210 IR 211 ++ Sbjct: 223 LK 224 >gi|138894535|ref|YP_001124988.1| organic radical activating protein [Geobacillus thermodenitrificans NG80-2] gi|134266048|gb|ABO66243.1| Organic radical activating enzyme [Geobacillus thermodenitrificans NG80-2] Length = 225 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 15/124 (12%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ +CR+CD+ F G+ D+ + Sbjct: 3 IGQKTMFVRTAGCDY-----------RCRWCDSAFTW-DGSAKEEIEQLTAEDIWQRLEA 50 Query: 80 TGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + R+ ++GG P LL L+ L+++G ++AVET G+ + +D + +SPK Sbjct: 51 IGGRRFRHVTISGGNPLLLAALGELVALLHEKGVQVAVETQGSRWQDWLLDVDDVTISPK 110 Query: 137 AGCD 140 Sbjct: 111 PPSS 114 >gi|169831395|ref|YP_001717377.1| radical SAM domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169638239|gb|ACA59745.1| Radical SAM domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 246 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 55/251 (21%), Positives = 85/251 (33%), Gaps = 56/251 (22%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-----FVGIQG 59 + E+F ++QGEG + G +F RF+GCNL QC +CDT ++ Sbjct: 6 PVTEVFTSVQGEGPYLGCRHMFVRFAGCNL-----------QCAYCDTPAPAGRRCRVEN 54 Query: 60 TKGGRY-----NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGF 112 T G R N + L++ LTGGEPLL D + + G Sbjct: 55 TPGRRVFTWYPNPVTVQMLLDWTSRAVAPHFHALALTGGEPLLHADFLESFLVGFREYGG 114 Query: 113 EIAVETNGTIE-----PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF- 166 +ETNGT+ + +D + + K + F + ++ Sbjct: 115 RCYLETNGTLPEAMKRLARLVDIVAMDVKLPSMTGFPFPEAEHRRFLEAIGPAHAFVKVV 174 Query: 167 ------DFER---------------FSLQPMD-----GPFLEENTNLAISYCFQN-PKWR 199 D E LQP+ P E C P R Sbjct: 175 VGSETTDAELDAVCALLSAGAGRTMLVLQPVTPVSGVRPAPPERLLEMQERCLARLPDVR 234 Query: 200 LSVQTHKFIGI 210 + Q H+ +G+ Sbjct: 235 VIPQVHRTLGV 245 >gi|51244018|ref|YP_063902.1| hypothetical protein DP0166 [Desulfotalea psychrophila LSv54] gi|50875055|emb|CAG34895.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 212 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 55/215 (25%), Positives = 85/215 (39%), Gaps = 35/215 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EIF ++QGEG GR A F R SGC + C +CDT G Sbjct: 8 VHEIFTSIQGEGPLMGRPASFLRLSGC----------VEPLCPWCDTKQAWG---PGKTI 54 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIAVETNGTI 122 +V+++A + R C++TGGEP LQ + L + L G EI ET+G + Sbjct: 55 SVEEVASRLIALG------NRLCIITGGEPFLQWESGLNLLERLLLTEGIEIQYETSGKV 108 Query: 123 EPPQGID-WICVSPKAGCDL------KIKGGQELKLVFPQVNVSPENYI---GFDFERFS 172 P + SPK ++ + K V + +I D +R Sbjct: 109 LIPADCRGFKVCSPKYLANIWHYLPENSERADCFKFVAGDELKPVQEFITKHNLDQDRVW 168 Query: 173 LQPMDGPFLEENT--NLAISYCFQNPKWRLSVQTH 205 + PM E+ T +C ++ + S + H Sbjct: 169 IMPMGTGRDEQLTRSPKIWEFCVKH-HYNFSPRLH 202 >gi|197117706|ref|YP_002138133.1| 7-carboxy-7-deazaguanine synthase [Geobacter bemidjiensis Bem] gi|197087066|gb|ACH38337.1| 7-carboxy-7-deazaguanine synthase [Geobacter bemidjiensis Bem] Length = 251 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 62/258 (24%), Positives = 92/258 (35%), Gaps = 69/258 (26%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-------DFVGI 57 + E F ++QGEG G VF R +GCNL C FCDT + Sbjct: 8 PLVECFSSIQGEGVLVGLRQVFLRLAGCNL-----------NCSFCDTPGMSETPKECLL 56 Query: 58 QGTKGGR--------YNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVD-----VPL 103 + T G R ++++A L+E W G + +TGGEPLL +P+ Sbjct: 57 ELTPGRRDFFKVPNPVGLERVATLLES-WTEGWPGIHHSISVTGGEPLLYAKELKEWLPV 115 Query: 104 IQALNKRGFEIAVETNGTI-----EPPQGIDWICVSPKAGC---------------DLKI 143 ++ L + +ETNGT+ +D+I + K + Sbjct: 116 LRTL----LPVYLETNGTLAHQLAPLMPHLDYIGMDFKLPSTSGCVNLWDAHRAFLETAS 171 Query: 144 KGGQELKLVFPQVNVSPENYIGFDFE-------RFSLQPM---DGPFLEENTNLAI--SY 191 K +K+V Q E LQPM G + Sbjct: 172 KTSVFVKIVIDQSTEDWEIERSCQMIMAVNPGIPLILQPMTLGSGAVALPALRMLELQEL 231 Query: 192 CFQNPKWRLSVQTHKFIG 209 C + R+ QTHKF+G Sbjct: 232 CSGLNEVRVIPQTHKFMG 249 >gi|57641133|ref|YP_183611.1| organic radical activating protein [Thermococcus kodakarensis KOD1] gi|57159457|dbj|BAD85387.1| organic radical activating enzyme, radical SAM superfamily [Thermococcus kodakarensis KOD1] Length = 253 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 90/258 (34%), Gaps = 67/258 (25%) Query: 8 EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTK 61 E+F + QGEGG GR +F RF+GC+L C +CD+ +++ Sbjct: 7 EVFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------HCAWCDSREYIDASRVS 55 Query: 62 GGRYNV-------------DQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQA 106 RY V + +++E + TGGEP LQ + L++ Sbjct: 56 SWRYEVKPFTGRFEYRPNPASVEEVVEAVLRLDTGDIHSISYTGGEPTLQVKPLMALMER 115 Query: 107 LNKRGFEIAVETNGTIE-----PPQGIDWICV-----SPKAGCDLKIKGGQELKLVFPQV 156 + + GF+ +ET+G + D+ V S KA D K +E++ + Sbjct: 116 MKELGFDNFLETHGGLPELIRDVAPLTDYASVDIKDESAKATEDWKGLVLREVESIRILK 175 Query: 157 NVSPENYIGFD-------------------FERFSLQPMDGPFLEENTNLAISY-----C 192 + Y +QP + + + L Y Sbjct: 176 EAGAKTYAKLVVTSETKVENVQWYASLLKGLAPLVIQPREPIEVSQA-KLMEFYREAARI 234 Query: 193 FQNPKWRLSVQTHKFIGI 210 LS Q HK++ + Sbjct: 235 MGRKNVGLSFQVHKYLNV 252 >gi|115378070|ref|ZP_01465248.1| radical activating enzyme [Stigmatella aurantiaca DW4/3-1] gi|115364909|gb|EAU63966.1| radical activating enzyme [Stigmatella aurantiaca DW4/3-1] Length = 194 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 73/208 (35%), Gaps = 45/208 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 + F R +GC+L +C +CD++F GT R Q+ + ++ Sbjct: 1 MLCAFVRLTGCHL-----------RCTYCDSEFAFRGGT---RMPNAQVVEQVKAL---- 42 Query: 82 EKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE---PPQG----IDWICV 133 +TGGEPLLQ V PL++AL G + +ET+G I+ P +D Sbjct: 43 --RTPMVEITGGEPLLQPGVYPLMEALLAEGLTVLLETSGAIDVRLVPPAVHKIVDMKTP 100 Query: 134 SPKAGCDLKIKGG------QELKLV--------FPQVNVSPENYIGFDFERFSLQPMDGP 179 S ++ E+K V + + ++ F + Sbjct: 101 SSGESDRNDVRNFSSMNARDEMKFVIGSREDYEWSKALIAEHGLATKPFAMLF-STVFDK 159 Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKF 207 LA R +Q HK+ Sbjct: 160 LHPR--ELAEWVIADRLPVRFQLQMHKY 185 >gi|157738262|ref|YP_001490946.1| radical SAM domain-containing protein [Arcobacter butzleri RM4018] gi|157700116|gb|ABV68276.1| radical SAM domain protein [Arcobacter butzleri RM4018] Length = 254 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 18/157 (11%) Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRF-CDTDFVGI 57 + I EIF T+QGEG G ++F RF CN G + S ++ CD+ + Sbjct: 1 MLEINEIFGPTIQGEGKLVGTPSIFIRFGKCNFSCTGFGVVYETPSGIKKYACDSYYAVD 60 Query: 58 QGTKGGRYNVDQLADLIEEQWIT----GEKEGRYCVLTGGEPLLQVDVPLIQALNKR--- 110 + K D++ E V+TGGEPLL + Q L K Sbjct: 61 KEFKDTWTKYQSYNDIVAEVDNLISTYNYNYKIDIVITGGEPLLYWNKKEFQKLLKHYIE 120 Query: 111 -GFEIAVETNGTIEPPQGIDW-----ICVSPKAGCDL 141 G ++ +ETN ++ D+ +S K L Sbjct: 121 NGHKVTIETNASLNINFEFDYQKEILFSMSVKLSNSL 157 >gi|253701563|ref|YP_003022752.1| radical SAM protein [Geobacter sp. M21] gi|251776413|gb|ACT18994.1| Radical SAM domain protein [Geobacter sp. M21] Length = 251 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 62/259 (23%), Positives = 92/259 (35%), Gaps = 71/259 (27%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-------DFVGI 57 + E F ++QGEG G VF R +GCNL C FCDT + Sbjct: 8 PLVECFSSIQGEGVLVGLRQVFLRLAGCNL-----------NCSFCDTPGMSETPKECLL 56 Query: 58 QGTKGGR--------YNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVD-----VPL 103 + T G R ++++A L+E W G + +TGGEPLL +P+ Sbjct: 57 ELTPGRRDFFRVPNPVGLERVATLLES-WTAGWPGIHHSISVTGGEPLLYAAELKEWLPV 115 Query: 104 IQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDL-------KIKGGQE--- 148 ++ L + +ETNGT+ +D+I + K + E Sbjct: 116 LRTL----LPVYLETNGTLPDQLAPLMPHLDYIGMDFKLPSTSGCTPLWDAHRAFLETAS 171 Query: 149 -----LKLVFPQ--VNVSPENYIGFDFER-----FSLQPMDGPFLE------ENTNLAIS 190 +K+V Q + E LQPM L Sbjct: 172 KTRVFVKIVVDQGTEDWEIERSCQLIMAVNPGIPLILQPMTLANGTVALPALRMLELQ-E 230 Query: 191 YCFQNPKWRLSVQTHKFIG 209 C + R+ QTHKF+G Sbjct: 231 LCSGLNEVRVIPQTHKFMG 249 >gi|183222780|ref|YP_001840776.1| putative organic radical activating protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912811|ref|YP_001964366.1| organic radical activating enzyme [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777487|gb|ABZ95788.1| Organic radical activating enzyme [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781202|gb|ABZ99500.1| Putative organic radical activating enzyme [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 236 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 93/244 (38%), Gaps = 53/244 (21%) Query: 3 LY-SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 +Y I EI+ ++ GEG G VF RF+GC+L G+ R +CDT + + + Sbjct: 1 MYGKIHEIYSSISGEGISQGIPTVFVRFAGCSLRCGKTDTRSL----WCDTPYA-LGPNQ 55 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK--RGFEIA---- 115 G + + D I T + +LTGGEPL + L ++ + F Sbjct: 56 GETKPLSTIMDEIVALDPTHGYQ---ILLTGGEPLEGKNRDLSISIAESIHSFRTHNDKP 112 Query: 116 -----VETNGTIEPPQGIDWICVSP--KAGCDLKIKG-GQELKLVFPQVNVSPENYIGFD 167 VETNG+ + I + P D K+ G G E ++ + + + D Sbjct: 113 YPSSRVETNGS-------EKITLDPFFIFTMDYKLPGSGMEGRMDLENFQILEKRHNSLD 165 Query: 168 FERFSL---------------QPM------DGPFLEENTNLAISYCF--QNPKWRLSVQT 204 +F + Q + E + + + PK RLS+Q Sbjct: 166 EIKFVVRDRIDFERSIEVIREQKIQTNILYSPVHGEVDAKELVEWIKIDNPPKGRLSLQI 225 Query: 205 HKFI 208 HK + Sbjct: 226 HKVL 229 >gi|240103382|ref|YP_002959691.1| Radical SAM protein [Thermococcus gammatolerans EJ3] gi|239910936|gb|ACS33827.1| Radical SAM protein [Thermococcus gammatolerans EJ3] Length = 253 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 101/267 (37%), Gaps = 72/267 (26%) Query: 1 MKLYSIKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DF 54 MKL + E+F + QGEGG GR +F RF+GC+L C +CD+ ++ Sbjct: 1 MKLI-MAEVFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------NCAWCDSREY 48 Query: 55 VGIQGTKGGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--V 99 + RY V+ +L D+++ + TGGEP LQ Sbjct: 49 IDPSRVSRWRYEVEPFTAKFEYKPNPAELEDVVDAVLRLDTGDIHSISYTGGEPTLQVKP 108 Query: 100 DVPLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGC--------DLKIKGG 146 L++ + GF+ +ET+G + D+ V K L ++ Sbjct: 109 LKALMERMKSLGFDNFLETHGGLPELIEEVAPLTDYASVDIKDETARATEDWRSLVLREV 168 Query: 147 QELKL-------VFPQVNVSPENYIGFDFERFS-----------LQP-----MDGPFLEE 183 + +++ V+ ++ V+PE + R+ +QP + L + Sbjct: 169 ESIRILREAGVKVYAKLVVTPET--KIENVRWYAELLKGLAPLVIQPREPIEICQRRLMD 226 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 A + LS Q HK++ + Sbjct: 227 LYREA-ALILGRKNVGLSFQVHKYLNV 252 >gi|322418702|ref|YP_004197925.1| Radical SAM domain-containing protein [Geobacter sp. M18] gi|320125089|gb|ADW12649.1| Radical SAM domain protein [Geobacter sp. M18] Length = 250 Score = 108 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 70/263 (26%), Positives = 93/263 (35%), Gaps = 79/263 (30%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-------DFVGI 57 + E F ++QGEG G VF RFSGCNL C FCDT D + Sbjct: 7 PLVECFSSIQGEGVLVGLRQVFLRFSGCNL-----------NCSFCDTPGMTAVPDECLL 55 Query: 58 QGTKGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-- 107 + T G R ++++A LIE +TGGEPLL L + L Sbjct: 56 ELTPGRRDFFKVPNPVTLERVATLIESWTAAWPGIHHSISVTGGEPLLF-GTLLEEWLPV 114 Query: 108 NKRGFEIAVETNGTI-----EPPQGIDWICVSPKAGCDLKIK---GGQEL---------- 149 ++ I +ETNGT+ +D G D+K+ G EL Sbjct: 115 LRKFLPIYLETNGTLPEALAPLIPHLD------SVGMDIKLPSSSGCPELWDQHRAFLEL 168 Query: 150 --------KLVFPQVNVSPEN------YIGFDFER-FSLQPMDGPFLE------ENTNLA 188 K+V Q E D E LQPM L Sbjct: 169 AAMKEVFVKIVVDQSTQDWEIQRSCAMIAAVDPEIPLILQPMTRENGSIGITPLRTLELQ 228 Query: 189 ISYCFQNP--KWRLSVQTHKFIG 209 +P + R+ QTHKF+G Sbjct: 229 E---LTSPLKEVRVIPQTHKFMG 248 >gi|260887262|ref|ZP_05898525.1| radical SAM domain protein [Selenomonas sputigena ATCC 35185] gi|330838981|ref|YP_004413561.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185] gi|260863324|gb|EEX77824.1| radical SAM domain protein [Selenomonas sputigena ATCC 35185] gi|329746745|gb|AEC00102.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185] Length = 241 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 63/155 (40%), Gaps = 30/155 (19%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF---------- 54 +I EIF ++QGEG + G VF RF+GCN +C FCDT F Sbjct: 4 NILEIFSSIQGEGKYIGARQVFLRFAGCN-----------IKCSFCDTAFQPAASCRVEA 52 Query: 55 ---VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR- 110 G +V ++A I + LTGGEPLL I+AL Sbjct: 53 IPGCGEYEELPNPLSVQEVAARIRAFVV--PVRHHSISLTGGEPLLHAT--FIRALASEV 108 Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 +ETNGT+ + + ++ D+K+ Sbjct: 109 NVPFFLETNGTLY-EEMASILDITSYISMDIKLPS 142 >gi|326203402|ref|ZP_08193266.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] gi|325986222|gb|EGD47054.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] Length = 249 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 59/262 (22%), Positives = 92/262 (35%), Gaps = 84/262 (32%) Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-GT 60 + I EIF ++ GEG AG V F R +GCNL +C +CDT + + G Sbjct: 9 RRIPIIEIFNSVSGEGISAGSVVTFVRAAGCNL-----------RCNYCDTKYSYNELGN 57 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL----LQVDVPLIQALNKRGFEIAV 116 D + +++E + + TGGEPL + +PL L +GF++ + Sbjct: 58 GIQVLKPDGIVNILES------YNCKNVLCTGGEPLELNKAKRYLPL--YLASKGFKVRI 109 Query: 117 ETNGTIEP----------PQGIDWICVSPKAGCDLKIKGG------------------QE 148 ETNG+ I ++ + D+K E Sbjct: 110 ETNGSCPLYSKTELNDFAVDNISFLTL--NYALDVKCPDSGMSNYNIYNENFELLGPEDE 167 Query: 149 LKLVFPQVNVSPENYIGFDFERFS-----LQ---------PMDGPFLEENTNLAISYCFQ 194 +K + V + F FE L P+ G ++ + Sbjct: 168 IKFI-----VGTRRDLKFAFETIKEYSNILSKTGVTINFLPVFGKLEA---IEIVNMLKE 219 Query: 195 N--------PKWRLSVQTHKFI 208 N RLS+Q HKFI Sbjct: 220 NNAYFEKYGLNVRLSLQIHKFI 241 >gi|95929552|ref|ZP_01312294.1| Radical SAM [Desulfuromonas acetoxidans DSM 684] gi|95134249|gb|EAT15906.1| Radical SAM [Desulfuromonas acetoxidans DSM 684] Length = 251 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 59/257 (22%), Positives = 86/257 (33%), Gaps = 65/257 (25%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-----VGIQ 58 + E+F ++QGEG G VF R +GCNL C +CDTDF I+ Sbjct: 9 LPVVELFSSIQGEGPLVGCRQVFLRLAGCNL-----------DCAYCDTDFQPSKCARIE 57 Query: 59 GTKGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110 G +L + LTGGEPLL + L L + Sbjct: 58 TQPGSEQFLYWENPLESTRLLAHLSTWKHQQPHLHHSLSLTGGEPLLHAE-ALKAWLPQL 116 Query: 111 G--FEIAVETNGTIE-----PPQGIDWICVSPKAGCD---------------LKIKGGQE 148 F I +ETNGT+ ++W+ + K + +K Sbjct: 117 STLFPIQLETNGTLPQALQLVIDQVEWVVMDIKLESQTGEPTPWAQHGEFLRVAVKRSCC 176 Query: 149 LKLVF-------PQVNVSPENYIGFDFERFSLQPM--------DGPFLEENTNLAISYCF 193 +KLV V + LQP +G L + L Sbjct: 177 VKLVVGPGTSESELVQAAQLVRDNAPDSEVFLQPCTVAGQCSLNGRILLQWQALIAE--- 233 Query: 194 QNPKWRLSVQTHKFIGI 210 Q + R+ QTH F+ + Sbjct: 234 QGVRVRVVPQTHCFLAV 250 >gi|20092988|ref|NP_619063.1| hypothetical protein MA4197 [Methanosarcina acetivorans C2A] gi|19918305|gb|AAM07543.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 255 Score = 107 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 88/254 (34%), Gaps = 67/254 (26%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 SIKEIF ++QGEG + G F RFSGCNL C +CDT+F + Sbjct: 10 SIKEIFCSVQGEGPYVGVRQAFVRFSGCNL-----------NCNYCDTNFENLGTCDYEI 58 Query: 65 YNVDQLADLI--------EEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 + + + I E + K+ LTGGEPLL D I+ L + + Sbjct: 59 IEGNGIFEKIPNPINVEKLESLLQPFKKLHSVSLTGGEPLLHAD--FIEKLK-LPVPLYL 115 Query: 117 ETNGTIE-----PPQGIDWICVSPKAGCDLK-------------------IKGGQEL--- 149 E+N T+ + I ++ K L+ + +L Sbjct: 116 ESNMTLPEQARKLRENITYVAGDFKLPEALREIRPETRDMHVENTIKCFSLLKKNKLRDC 175 Query: 150 --KLVF-----PQVNVSPENYIGFDFERFSLQPM----DGPFLEENTNLAISYCFQNPK- 197 K+V P+ V I D LQP T ++ + K Sbjct: 176 FCKIVVGRDTRPETVVLAAEAIASDVSCIILQPETPVGSAVRTPRFTQASVQTILKLQKT 235 Query: 198 ------WRLSVQTH 205 R+ QTH Sbjct: 236 LLELADTRIIPQTH 249 >gi|229160394|ref|ZP_04288392.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus R309803] gi|228623118|gb|EEK79946.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus R309803] Length = 220 Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 15/140 (10%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDIWNELVA 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P L ++ L+ L + G A+ET G+ + ID + +SPK Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQV 156 Q+L V ++ Sbjct: 111 PPSSTMHTDFQKLDAVIQKL 130 >gi|296109842|ref|YP_003616791.1| Radical SAM domain protein [Methanocaldococcus infernus ME] gi|295434656|gb|ADG13827.1| Radical SAM domain protein [Methanocaldococcus infernus ME] Length = 234 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 89/252 (35%), Gaps = 67/252 (26%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-----DFVGIQGT 60 I EIF ++ GEG + GR +F RF CNL C +CD + V ++ Sbjct: 2 ITEIFSSIMGEGKYIGRRYIFIRFPKCNL-----------NCIYCDERKNYKNRVEVEPG 50 Query: 61 KG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVE 117 G + + D+++E + TGGEPLL L + L K+GF +E Sbjct: 51 SGVFEEREIRDVKDIVKEVERLKTDDLFAISFTGGEPLLFDKLDELNKLLKKKGFRTHLE 110 Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKG------------GQELKLVFPQ---------- 155 +NGT+ I D+K+KG + +K+++ Sbjct: 111 SNGTLPERLVFTDI-----GSIDIKLKGHIPNYKEVYNKELESIKILYENGVDVYAKVVI 165 Query: 156 ---VNVSPENYIGFDFERF-----SLQP---------MDGPFLEENTNLAISYCFQNPKW 198 V + D LQP + + + A Y Sbjct: 166 LSSNTVEEIEKVAKDLSEIGSILLCLQPVTPTKDIKGVSKKVIFKMMEKAGKYV----DV 221 Query: 199 RLSVQTHKFIGI 210 ++Q HK++ I Sbjct: 222 MTTIQMHKYMKI 233 >gi|228951823|ref|ZP_04113921.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807746|gb|EEM54267.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 220 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 15/140 (10%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ +E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P L ++ L+ L + G A+ET G+ + ID + +SPK Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQV 156 +L + ++ Sbjct: 111 PPSSTMKTDFHKLDAIIEKL 130 >gi|167630604|ref|YP_001681103.1| radical sam domain protein, putative [Heliobacterium modesticaldum Ice1] gi|167593344|gb|ABZ85092.1| radical sam domain protein, putative [Heliobacterium modesticaldum Ice1] Length = 246 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 62/258 (24%), Positives = 91/258 (35%), Gaps = 75/258 (29%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + EI ++ QGEG G VF RF GCNL C +CDT G++G R Sbjct: 10 LVEIMVSAQGEGPWIGCRQVFLRFFGCNL-----------SCSYCDTP-----GSRGPRP 53 Query: 66 NVDQL-----------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQA 106 + ++ D + E LTGGEPLL V+ LI Sbjct: 54 SACRIEKEPGSSLFDLWENPVTVDRVAEYLCH-TVPIHSVSLTGGEPLLHVEFIQQLIPL 112 Query: 107 LNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCD-----------LKIKGGQELK 150 L + ++ +ETNGT+ +D++ + K D + + +K Sbjct: 113 LGAQRPDLYLETNGTLPEQLALIVDDLDYVSMDLKTPLDNHWDLHRLFLRIASRKKGYVK 172 Query: 151 LVFP-----QVNVSPENYIGFDFERF--SLQPMDGPFLEENT-----------NLAISYC 192 +V V I + F LQP+ G T LAI Sbjct: 173 IVITPTTALDVVQRAAAIIEEEAPHFPLVLQPVTGKTGLPLTVPGHLLNLQGAALAI--- 229 Query: 193 FQNPKWRLSVQTHKFIGI 210 + R+ Q H +GI Sbjct: 230 --HRDVRIIPQVHPILGI 245 >gi|158335495|ref|YP_001516667.1| radical SAM domain-containing protein [Acaryochloris marina MBIC11017] gi|158305736|gb|ABW27353.1| radical SAM domain protein [Acaryochloris marina MBIC11017] Length = 256 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 61/269 (22%), Positives = 98/269 (36%), Gaps = 86/269 (31%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------- 57 ++ EIF +QGEG + G +F RF GC+L +C FCD+ Sbjct: 8 NLVEIFSAIQGEGLNVGTRQIFIRFGGCDL-----------RCHFCDSAHTWTPKSSCQI 56 Query: 58 QGTKGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-----VDVPLI 104 + T G R + Q+ + +++Q + G + LTGGEPLLQ +PL+ Sbjct: 57 EKTPGCRDFARYPNPVTLPQILEWVQDQDLPGMHDS--ISLTGGEPLLQVAFLQNLLPLL 114 Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWICVSP---KAGCDLKIKG------------GQEL 149 + + I +ET G P+ +D + P G DLK+ EL Sbjct: 115 R--QQTSLPIYLETGGHH--PEALD--PLLPHLDSVGMDLKLPSVSGENHWPQHRQSLEL 168 Query: 150 ----------------KLVFPQVNVSPENYIGFDFERF-SLQPM----DGPFLEENTNLA 188 K +P++ + + LQP+ ++ T Sbjct: 169 CHQAHIDVFCKLIISEKTDWPELVQAAQMVADISPTVLMFLQPVTPLTAQHPVQPPTP-- 226 Query: 189 ISYCFQ--------NPKWRLSVQTHKFIG 209 + R+ QTHKF+G Sbjct: 227 -DQVLAWQGQLKQMGRQIRVVPQTHKFLG 254 >gi|254173693|ref|ZP_04880365.1| organic radical activating enzyme, radical SAM superfamily [Thermococcus sp. AM4] gi|214032385|gb|EEB73215.1| organic radical activating enzyme, radical SAM superfamily [Thermococcus sp. AM4] Length = 253 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 97/260 (37%), Gaps = 71/260 (27%) Query: 8 EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTK 61 E+F + QGEGG GR +F RF+GC+L C +CD+ +++ Sbjct: 7 EVFNSWQGEGGSVEGSAFGRRQIFIRFAGCDL-----------NCAWCDSREYIDASRVS 55 Query: 62 GGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQA 106 RY V+ L +++E + TGGEP LQ L++ Sbjct: 56 RWRYEVEPFTGKFEYRPNPASLDEVVEAVTRLDTGDIHSISYTGGEPTLQVKPLKALMEE 115 Query: 107 LNKRGFEIAVETNGTIEPP----------QGIDWICVSPKAGCD---LKIKGGQELKL-- 151 + GF+ +ET+G + +D + KA D L ++ + +++ Sbjct: 116 MKSLGFDNFLETHGGLPELIREVAHLTDYASVDIKDETAKATEDWRSLVLREVESIRILK 175 Query: 152 -----VFPQVNVSPENYIGFDFERFS-----------LQP-----MDGPFLEENTNLAIS 190 V+ ++ V+ E + R+ +QP + L E A + Sbjct: 176 EAGAKVYAKLVVTSET--KLENVRWYAELLRGLAPLVIQPREPIEIGQEKLMELYREA-A 232 Query: 191 YCFQNPKWRLSVQTHKFIGI 210 LS Q HK++ + Sbjct: 233 LILGRKNVGLSFQVHKYLNV 252 >gi|228920154|ref|ZP_04083503.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839610|gb|EEM84902.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 220 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 20/159 (12%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDIWSELVA 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P L ++ L+ L + G A+ET G+ + ID + +SPK Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLEIDEVTISPK 110 Query: 137 AGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFER 170 Q+L KL +++ + +DFE Sbjct: 111 PPSSTMKTDFQKLDAMIQKLAGKDISLKVVVFDDYDFEY 149 >gi|167950638|ref|ZP_02537712.1| Radical SAM domain protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 136 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 32/154 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M I EIF +LQGE AG R S +CDT++ Sbjct: 7 MARLRISEIFYSLQGESRTAGLSTALVLRL----------NRLPSYVVSYCDTEYAF--- 53 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVET 118 + G + + D +E R +TGGEPL Q + L+ +L ++G E+++ET Sbjct: 54 SGGEWMELAAVLDQVER------SAARRICVTGGEPLAQTACIELLDSLLEQGCEVSLET 107 Query: 119 NGTIEPPQGIDWICVSPKAGC-----DLKIKGGQ 147 +G ++ V P+ D +++ G Sbjct: 108 SGALDISA------VDPRVSRVVDSEDPRLRRGD 135 >gi|229068993|ref|ZP_04202286.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus F65185] gi|229078627|ref|ZP_04211184.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus Rock4-2] gi|229177849|ref|ZP_04305222.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus 172560W] gi|228605640|gb|EEK63088.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus 172560W] gi|228704697|gb|EEL57126.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus Rock4-2] gi|228714105|gb|EEL65987.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus F65185] Length = 220 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 15/140 (10%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ +E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P L ++ L+ L + G A+ET G+ + ID + +SPK Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQV 156 +L + ++ Sbjct: 111 PPSSTMKTDFHKLDAIIQKL 130 >gi|228900023|ref|ZP_04064259.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis IBL 4222] gi|228964405|ref|ZP_04125519.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar sotto str. T04001] gi|228795262|gb|EEM42754.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar sotto str. T04001] gi|228859637|gb|EEN04061.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis IBL 4222] Length = 220 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 15/140 (10%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ +E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKNQIRQMTAEDIWDELVA 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G ++ + ++GG P L ++ L+ L + G A+ET G+ + ID + +SPK Sbjct: 51 IGGEKFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQV 156 Q+L + ++ Sbjct: 111 PPSSTMKTDFQKLDAIIQKL 130 >gi|229189524|ref|ZP_04316540.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus ATCC 10876] gi|228593969|gb|EEK51772.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus ATCC 10876] Length = 220 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 15/140 (10%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ +E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P L ++ L+ L + G A+ET G+ + ID + +SPK Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQV 156 +L + ++ Sbjct: 111 PPSSTMKTDFHKLDAIIQKL 130 >gi|315230412|ref|YP_004070848.1| queuosine biosynthesis QueE-like protein [Thermococcus barophilus MP] gi|315183440|gb|ADT83625.1| queuosine biosynthesis QueE-like protein [Thermococcus barophilus MP] Length = 255 Score = 105 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 99/259 (38%), Gaps = 69/259 (26%) Query: 8 EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTK 61 EIF + QGEGG GR +F RF+GC+L +C +CD+ F+ Sbjct: 9 EIFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------RCVWCDSRQFIDASKVL 57 Query: 62 GGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQA 106 RY ++ L ++++ + TGGEP LQ L++ Sbjct: 58 QWRYEIEPFSGEFKYKPNPATLDEVVDVILSLDTGDVHSISYTGGEPTLQIKPLKALMEK 117 Query: 107 LNKRGFEIAVETNGTIE-----PPQGIDWICVSPK--------AGCDLKIKGGQELKL-- 151 ++ GF+ +ET+G +D+ V K A DL + + +K+ Sbjct: 118 SSELGFKNFLETHGGFPERIAEIAHLVDYASVDIKDESARATGAWRDLVMMEVESIKILR 177 Query: 152 -----VFPQVNVSPENYIGFDFERFS----------LQPMD-----GPFLEENTNLAISY 191 V+ ++ V+ + + + E ++ +QP + L E A + Sbjct: 178 KAGAKVYAKLVVTKDTKLE-NIEWYASLLEGSAPLVIQPKEPIDLTQKQLMEFYKAA-AK 235 Query: 192 CFQNPKWRLSVQTHKFIGI 210 LS Q HK++ + Sbjct: 236 ILGRENVGLSFQVHKYLNV 254 >gi|229100293|ref|ZP_04231179.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus Rock3-29] gi|229114880|ref|ZP_04244293.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus Rock1-3] gi|228668572|gb|EEL24001.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus Rock1-3] gi|228683123|gb|EEL37115.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus Rock3-29] Length = 220 Score = 105 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 15/140 (10%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCSWCDSAFTW-DGSAKDQIRQMPAEDIWNELVE 50 Query: 80 TGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P LL+ L+ L + G A+ET G+ + ID I +SPK Sbjct: 51 IGGENFSHVTISGGNPVLLKNIESLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQV 156 Q+L V ++ Sbjct: 111 PPSSGMKTDYQKLDAVIQKL 130 >gi|229016691|ref|ZP_04173624.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus AH1273] gi|229022903|ref|ZP_04179423.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus AH1272] gi|228738438|gb|EEL88914.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus AH1272] gi|228744599|gb|EEL94668.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus AH1273] Length = 220 Score = 105 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 15/140 (10%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMSAEDIWNELVE 50 Query: 80 TGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P LL+ L+ L + G A+ET G+ + ID + +SPK Sbjct: 51 IGGENFSHVTISGGNPVLLKNIESLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQV 156 Q+L V ++ Sbjct: 111 PPSSAMHTDFQKLDDVIQKL 130 >gi|169828572|ref|YP_001698730.1| coenzyme PQQ synthesis-like protein [Lysinibacillus sphaericus C3-41] gi|168993060|gb|ACA40600.1| coenzyme PQQ synthesis-like protein [Lysinibacillus sphaericus C3-41] Length = 224 Score = 105 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 66/179 (36%), Gaps = 36/179 (20%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ ++ E Sbjct: 3 VGQKTMFVRTAGCDY-----------SCSWCDSSFTW-DGSGKHLIVQMTAEEIWAELKR 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136 G Y ++GG P L ++ LI L + ++AVET G+ ID + +SPK Sbjct: 51 LGGNGFSYVTISGGNPALYANLEALIAILKENNIKVAVETQGSRWQNWMYDIDELTISPK 110 Query: 137 AGC---------------DLKIKGGQ---ELKLVF---PQVNVSPENYIGFDFERFSLQ 174 A L+++ LK+V + + + + F F LQ Sbjct: 111 APSSGMTTEYSVLVDIFGKLRLRNSHHHISLKIVVFTQEDYDFAKQIHHQFPTIPFYLQ 169 >gi|238926278|ref|ZP_04658038.1| radical SAM domain protein [Selenomonas flueggei ATCC 43531] gi|238885958|gb|EEQ49596.1| radical SAM domain protein [Selenomonas flueggei ATCC 43531] Length = 248 Score = 105 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 59/250 (23%), Positives = 88/250 (35%), Gaps = 65/250 (26%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------IQ 58 +I EIF ++QGEG + G VF R GCNL C +CDTD + Sbjct: 9 NIIEIFSSIQGEGKYVGCRQVFLRLEGCNL-----------NCTYCDTDSKAGTHPNCVV 57 Query: 59 GTKGGRYNVDQLADLIE-------EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR- 110 G Y++ + I + +TGGEPLL I+AL Sbjct: 58 EEGAGTYHLVPYPNPISPERAAELVALAAAGVPHQALSITGGEPLLHA--SFIRALAPHV 115 Query: 111 GFEIAVETNGTI--EPPQGIDWICVSPKAGCDLKIKG---------------GQELKLVF 153 I +ETNGT+ E + ID + D+K+ ++K + Sbjct: 116 HLPIYLETNGTLYAELKKCIDCVA---GISMDIKLPSVTAHPVWDAHVRFLEIAKVKDTW 172 Query: 154 PQVNV---SPENYIGFDFERFS---------LQ---PMDGPFLEENTNL--AISYCFQNP 196 ++ V SP++ I + LQ P G + L + Sbjct: 173 IKIVVAAESPDSEIDTAVRLVADTAPETMLILQPVTPCGGCMKPSSEQLLKWQETALRRL 232 Query: 197 -KWRLSVQTH 205 R+ QTH Sbjct: 233 ANVRVIPQTH 242 >gi|332158894|ref|YP_004424173.1| hypothetical protein PNA2_1254 [Pyrococcus sp. NA2] gi|331034357|gb|AEC52169.1| hypothetical protein PNA2_1254 [Pyrococcus sp. NA2] Length = 254 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 59/267 (22%), Positives = 104/267 (38%), Gaps = 71/267 (26%) Query: 1 MKLYSIKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCD---- 51 M + E+F + QGEGG GR +F RF+GC+L +C +CD Sbjct: 1 MVKLILAEVFNSWQGEGGSVPGSAFGRRQIFVRFAGCDL-----------RCFYCDSSQF 49 Query: 52 -------TDFVGIQGTKGG---RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-- 99 T V I+ G + N + ++++ + TGGEP LQ+ Sbjct: 50 LSPLNVKTWRVEIEPFSGKFEYKKNPASVEEVVKVVLSLDTGDIHSISYTGGEPTLQIKG 109 Query: 100 DVPLIQALNKRGFEIAVETNGTIE-----PPQGIDWICV-----SPKA---GCDLKIKGG 146 L+ + GF+ +ET+G + +D+ V S KA DL ++ Sbjct: 110 LRILMDRMKSLGFDNFLETHGGHPNLIREIAELVDYASVDIKDESSKAYGNWKDLVLREV 169 Query: 147 QELKL-------VFPQVNVSPENYIGFDFERFS-----------LQP-----MDGPFLEE 183 + +K+ V+ ++ V+ + + R+ +QP + FL + Sbjct: 170 ESIKILKDAGAEVYAKLVVTRDT--KLENVRWYAELLRGLAPLVIQPAEPINISMKFLMK 227 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 N ++ LS Q HK++G+ Sbjct: 228 LYNE-VARIMGKKNVGLSFQVHKYLGV 253 >gi|217033120|ref|ZP_03438583.1| hypothetical protein HPB128_8g11 [Helicobacter pylori B128] gi|298736112|ref|YP_003728637.1| 6-pyruvoyltetrahydropterin 2'-reductase [Helicobacter pylori B8] gi|216945163|gb|EEC23856.1| hypothetical protein HPB128_8g11 [Helicobacter pylori B128] gi|298355301|emb|CBI66173.1| 6-pyruvoyltetrahydropterin 2'-reductase [Helicobacter pylori B8] Length = 251 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 55/216 (25%), Positives = 86/216 (39%), Gaps = 29/216 (13%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVG- 56 MKL + E F +LQGEG + G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKNIGKPSLFLRLGGCNLSCKGFNCKTPFNDEILTGCDSLYAVH 59 Query: 57 --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALN---KR 110 + T + L + +E +T + +LTGGEP L + P LI L ++ Sbjct: 60 PKFKETWDYYNDPKPLIERLE--GLTPNYKHFDFILTGGEPSLYFNNPILISVLEHFYRK 117 Query: 111 GFEIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 + VE+NG+I P +S K L+ +E K + + + N Sbjct: 118 KIPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EESKRIHLKALQNILNNAKS 173 Query: 167 DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202 +F L + T I QN RLS+ Sbjct: 174 VHFKFVL------ESQNATQSIIE--IQNLLKRLSL 201 >gi|228907074|ref|ZP_04070938.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis IBL 200] gi|228852578|gb|EEM97368.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis IBL 200] Length = 220 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 15/140 (10%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ +E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKNQIRQMTAEDIWDELVT 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136 G + + ++GG P L ++ L+ L + G A+ET G+ ID + +SPK Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQNWLLQIDEVTISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQV 156 Q+L + ++ Sbjct: 111 PPSSTMKTDFQKLDAIIQKL 130 >gi|148264177|ref|YP_001230883.1| radical SAM domain-containing protein [Geobacter uraniireducens Rf4] gi|146397677|gb|ABQ26310.1| Radical SAM domain protein [Geobacter uraniireducens Rf4] Length = 250 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 65/258 (25%), Positives = 98/258 (37%), Gaps = 75/258 (29%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT------DFVGIQGTK 61 E+F ++QGEG G +F R GCN C +CDT +F ++GT Sbjct: 10 ELFSSIQGEGMLVGLRQIFIRLCGCNFT-----------CNYCDTESNVSVEFCQMEGTP 58 Query: 62 GGR--------YNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQAL--NKR 110 G R +++L LI W G + +TGGEPLL ++ L + L + Sbjct: 59 GRRDFIQVKNPVALERLTCLI-SGWQRGWPGIHHSISITGGEPLLHYEL-LQEWLPVLRE 116 Query: 111 GFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLKIK---GGQEL------------- 149 I +ETNG + ID + G D+KI G +L Sbjct: 117 FLPIYLETNGVLHKELSQVISHIDHV------GMDIKIPSTSGCADLWKDHEAFLRIAAA 170 Query: 150 KLVFPQVNV--SPENYIGFDFERF----------SLQPMDGPFLE------ENTNLAISY 191 K VF + + + E++ LQP+ P + + L + Sbjct: 171 KNVFVKAVIGNNTEDWEIIKASEIIASIDNAIPLILQPLTNPDGKIDIAPVKMLELQETA 230 Query: 192 CFQNPKWRLSVQTHKFIG 209 + R+ QTHKFIG Sbjct: 231 SIFLKEVRIIPQTHKFIG 248 >gi|228938557|ref|ZP_04101165.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971436|ref|ZP_04132062.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978049|ref|ZP_04138428.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis Bt407] gi|228781710|gb|EEM29909.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis Bt407] gi|228788303|gb|EEM36256.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821155|gb|EEM67172.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939066|gb|AEA14962.1| organic radical activating protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 220 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 15/140 (10%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ +E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P L ++ L+ L + G A+ET G+ + ID + +SPK Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQV 156 Q+L + ++ Sbjct: 111 PPSSTMKTDFQKLDAIIQKL 130 >gi|254412243|ref|ZP_05026018.1| radical SAM domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181209|gb|EDX76198.1| radical SAM domain protein [Microcoleus chthonoplastes PCC 7420] Length = 269 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 62/265 (23%), Positives = 96/265 (36%), Gaps = 76/265 (28%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-------I 57 + E+F +QGEG + G +F R + C+L +C FCD+ + Sbjct: 19 RLIELFSAIQGEGRNVGTRQLFIRLALCDL-----------RCHFCDSQNTWAVPNLASV 67 Query: 58 QGTKGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-- 107 + T G R VDQL +E Q G E +TGGEPLLQ P ++ Sbjct: 68 EQTPGHRDFETHPNPVTVDQLLAWVERQNYPGLHES--ISITGGEPLLQA--PFLREFLP 123 Query: 108 ---NKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK--GGQE-------------- 148 ++ G I +ET G P Q + G D+K+ G+E Sbjct: 124 VVQHRTGLPIYLETGG-HRPEQLAQILPYLNSIGMDMKLPSVSGEECWHAHRQFLQVCGD 182 Query: 149 ------LKLVFPQVNVSPENYIGFDFER-------FSLQPMDGPFLEENTNLA------- 188 +KL+ Q + E + + LQP+ + + Sbjct: 183 ADVEVFVKLIIAQTTNTAELELAAELVAACNPSIPVFLQPVTPLAQPHHAPMIPPTPTQV 242 Query: 189 ---ISYCFQNPK-WRLSVQTHKFIG 209 + ++ K R+ QTHK IG Sbjct: 243 LEWQALMKRHLKSVRVIPQTHKMIG 267 >gi|22298438|ref|NP_681685.1| hypothetical protein tll0895 [Thermosynechococcus elongatus BP-1] gi|22294618|dbj|BAC08447.1| tll0895 [Thermosynechococcus elongatus BP-1] Length = 301 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 62/262 (23%), Positives = 90/262 (34%), Gaps = 66/262 (25%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57 + EIF +QGEG + G +F R +GC+L +C +CD+ Sbjct: 52 LPLVEIFSAIQGEGANVGCRQIFIRLAGCDL-----------RCTYCDSAHTWFVPSHAL 100 Query: 58 -QGTKGGRY-----NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQV--DVPLIQALN 108 + G R+ N A ++E LTGGEPLL + L Sbjct: 101 IEKQTGDRHFQTVPNPVSAAHILEAVQRLNTPPIHDSISLTGGEPLLHAATLARFLPLLK 160 Query: 109 KR-GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG-GQE---------LKL------ 151 + +ET G + + G D+K+ E L+L Sbjct: 161 AHSSLPLYLETGGHHPEALQL-ILPYLDSVGMDIKLPSVSGECHWSAHGVFLRLCDRAPV 219 Query: 152 -VFPQVNVS----PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP------KW-- 198 VF +V VS P + S+ P FL+ T + C P KW Sbjct: 220 EVFCKVIVSRTTDPADLDRLSALVASVNPHIPIFLQPVTPVGTGRCTPPPTPDQVLKWQG 279 Query: 199 ---------RLSVQTHKFIGIR 211 R+ QTHKF+G R Sbjct: 280 QLKTRLTHVRVVPQTHKFLGQR 301 >gi|254497309|ref|ZP_05110117.1| hypothetical protein LDG_1789 [Legionella drancourtii LLAP12] gi|254353537|gb|EET12264.1| hypothetical protein LDG_1789 [Legionella drancourtii LLAP12] Length = 291 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 79/184 (42%), Gaps = 30/184 (16%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + F TLQGEG + G A F R + CNL C FCDT F + Sbjct: 23 VTSRFFTLQGEGPYRGHPAYFIRLAKCNL-----------ACSFCDTYFDSGEWRSFSSL 71 Query: 66 NVDQ---LADLIEE------QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-IA 115 V+ +A+ ++ W G + V+TGGEP LQ +V A +R F+ Sbjct: 72 LVEADVVIAEFFKQRNLPIPAWGQGVAKKIVLVITGGEPSLQNNVSAFLAEAQRYFQYTQ 131 Query: 116 VETNGT---IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENYIGFDFERF 171 +E+NGT + P + VSPK K G ++ + P V ++ +Y+ F Sbjct: 132 IESNGTSVLSDLPPSTTLV-VSPKCLE----KNGAAVRYLEPNVKMLARADYLKFVMSAP 186 Query: 172 SLQP 175 ++P Sbjct: 187 EVEP 190 >gi|304437068|ref|ZP_07397031.1| radical SAM domain protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370019|gb|EFM23681.1| radical SAM domain protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 248 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 87/252 (34%), Gaps = 69/252 (27%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT--------DFVG 56 +I EIF T+QGEG + G VF R GCNL C +CDT D V Sbjct: 9 NIIEIFSTVQGEGKYVGCRQVFLRLEGCNL-----------HCSYCDTNSAVGMHPDCVV 57 Query: 57 IQGTK-------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 +G + + A+L+E + +TGGEPLL I AL Sbjct: 58 EEGAGTYHLVPYPNPISPQRAAELVE--IAAAGVPHQALNITGGEPLLHA--AFIHALAP 113 Query: 110 R-GFEIAVETNGTI--EPPQGIDWICVSPKAGCDLKIKGGQE------------------ 148 I +E+NGT+ E + +D + D+K+ Sbjct: 114 HVHLPIYLESNGTLHEELKKCVDCVA---GISMDIKLPSATTHPVWDAHVRFLEIAKAKD 170 Query: 149 --LKLVFP------QVNVSPENYIGFDFER-FSLQP------MDGPFLEENTNLAISYCF 193 +K+V +V+ + E LQP P E+ + Sbjct: 171 TWVKIVVAGESPDGEVDTAIRLVADIAPETMLILQPVTPYGGCTKPSPEQLLAWQENALR 230 Query: 194 QNPKWRLSVQTH 205 + R+ QTH Sbjct: 231 RLAHVRVIPQTH 242 >gi|228984517|ref|ZP_04144694.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775220|gb|EEM23609.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 220 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 20/159 (12%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P L ++ L+ L + G A+ET G+ + ID + +SPK Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170 Q+L + +++ + + +DFE Sbjct: 111 PPSSTMKTDFQKLDAIIQKLSGKDISLKVVVFDDYDFEY 149 >gi|229172081|ref|ZP_04299646.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus MM3] gi|228611424|gb|EEK68681.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus MM3] Length = 220 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 20/159 (12%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P L ++ L+ L + G A+ET G+ + ID I +SPK Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170 Q+L V ++ + + +DFE Sbjct: 111 PPSSAMNTDFQKLDAVIQKLAGKDISLKVVVFDDYDFEY 149 >gi|229155009|ref|ZP_04283123.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus ATCC 4342] gi|228628567|gb|EEK85280.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus ATCC 4342] Length = 220 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 20/159 (12%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P L ++ L+ L + G A+ET G+ + ID I +SPK Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170 Q+L + +++ + + +DFE Sbjct: 111 PPSSTMKTDFQKLDAIIQKLSGKDISLKVVVFDDYDFEY 149 >gi|229043184|ref|ZP_04190907.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus AH676] gi|228726146|gb|EEL77380.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus AH676] Length = 220 Score = 103 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 20/159 (12%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ +E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P L ++ L+ L + G A+ET G+ + ID I +SPK Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170 Q L + ++ + + +DFE Sbjct: 111 PPSSTMKTDFQRLDAIIQKLAGKDISLKVVVFDDYDFEY 149 >gi|229029113|ref|ZP_04185211.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus AH1271] gi|228732211|gb|EEL83095.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus AH1271] Length = 220 Score = 103 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 15/140 (10%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P L ++ L+ L + G A+ET G+ + ID I +SPK Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQV 156 Q+L V ++ Sbjct: 111 PPSSAMNTDFQKLDAVIQKL 130 >gi|228914013|ref|ZP_04077635.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926472|ref|ZP_04089544.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229090395|ref|ZP_04221638.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus Rock3-42] gi|229183635|ref|ZP_04310858.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus BGSC 6E1] gi|228599878|gb|EEK57475.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus BGSC 6E1] gi|228692978|gb|EEL46696.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus Rock3-42] gi|228833296|gb|EEM78861.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845618|gb|EEM90647.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 220 Score = 103 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 20/159 (12%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P+L ++ L+ L + G A+ET G+ + ID I +SPK Sbjct: 51 IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170 Q+L V ++ + + +DFE Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEY 149 >gi|229120981|ref|ZP_04250223.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus 95/8201] gi|228662641|gb|EEL18239.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus 95/8201] Length = 220 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 15/140 (10%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P+L ++ L+ L + G A+ET G+ + ID I +SPK Sbjct: 51 IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQV 156 Q+L V ++ Sbjct: 111 PPSSTMNTDFQKLDDVIQKL 130 >gi|228957714|ref|ZP_04119458.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar pakistani str. T13001] gi|229126759|ref|ZP_04255771.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus BDRD-Cer4] gi|229144046|ref|ZP_04272462.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus BDRD-ST24] gi|229149643|ref|ZP_04277874.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus m1550] gi|296502023|ref|YP_003663723.1| organic radical activating protein [Bacillus thuringiensis BMB171] gi|228633853|gb|EEK90451.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus m1550] gi|228639443|gb|EEK95857.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus BDRD-ST24] gi|228656699|gb|EEL12525.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus BDRD-Cer4] gi|228801957|gb|EEM48830.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar pakistani str. T13001] gi|296323075|gb|ADH06003.1| organic radical activating protein [Bacillus thuringiensis BMB171] Length = 220 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 15/140 (10%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ +E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P L ++ L+ L + G A+ET G+ + ID I +SPK Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQV 156 Q L + ++ Sbjct: 111 PPSSTMKTDFQRLDAIIQKL 130 >gi|303244776|ref|ZP_07331105.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1] gi|302484817|gb|EFL47752.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1] Length = 246 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 86/251 (34%), Gaps = 55/251 (21%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS--GREQDRLSAQCRFCDTDFVGIQGTKGG 63 I EIF ++ GEG GR +F RF GC L E + + CR + + G Sbjct: 2 ISEIFSSIMGEGKFIGRRYIFVRFKGCPLNCIYCDEHVKDNLICRV---EEIPGSGEFKE 58 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121 +++ LI+ + TGGEPLL D + L+ G++ +E+NG Sbjct: 59 YDDINDNDKLIDVINKLKTPDLFAISFTGGEPLLYADKIKEYSKILHNLGYKTHLESNGM 118 Query: 122 IEPPQGIDWICVSPKAGCDLKIKG--------------GQELKL----------VFPQVN 157 D I A D+K+ ELK V+ +V Sbjct: 119 YP-----DRITFFDYASIDIKLLEHFVNMDIETYTKLYKNELKSIKKLYDLGSDVYAKVV 173 Query: 158 VS-----------PENYIGFDFERFSLQPMDGPFLEENTNL------AISYCFQNPKWRL 200 + ++ +QP+ + T + C + K + Sbjct: 174 IMGNTNPKVVENIAKDLSDIGDIMLCIQPVSSCLNIKTTPTNKKLLDIMELCGAHLKDNV 233 Query: 201 SV--QTHKFIG 209 Q HK++G Sbjct: 234 ICTSQMHKYLG 244 >gi|228945040|ref|ZP_04107401.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814709|gb|EEM60969.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 220 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 20/159 (12%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P+L ++ L+ L + G A+ET G+ + ID I +SPK Sbjct: 51 IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170 Q+L V ++ + + +DFE Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEY 149 >gi|220910548|ref|YP_002485859.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7425] gi|219867159|gb|ACL47498.1| Radical SAM domain protein [Cyanothece sp. PCC 7425] Length = 268 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 59/263 (22%), Positives = 92/263 (34%), Gaps = 74/263 (28%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG----- 59 + E+F +QGEG + G +F RF+ C+L +C FCD+ Sbjct: 20 PLVEVFSAIQGEGLNVGTRQIFIRFAQCDL-----------RCHFCDSAHTWYSRPTCQI 68 Query: 60 ----------TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQAL 107 T +DQL +++ G LTGGEPLLQ L+ L Sbjct: 69 EQSPGQRDFQTYPNPVTIDQLLAWVKDL--HGPHLHDSISLTGGEPLLQSQFLQRLLPQL 126 Query: 108 NKR-GFEIAVETNGTIEPPQG--IDWICVSPKAGCDLKIKGGQ----------------- 147 + G + +ET G + W+ + G D+K+ Sbjct: 127 RETIGLPLYLETGGHRPQELQQVLAWLDL---VGMDIKLPSASGENYWTAHAEFLRCCHT 183 Query: 148 ---EL--KLVFPQ------VNVSPENYIGFDFER-FSLQPM----DGPFLEENTNLAI-- 189 E+ KL+ Q + + E D LQP+ + P + T + Sbjct: 184 AGVEVFCKLILSQQTEAEELEQTTELIASIDPAIPLILQPVTPLGNKPQILAPTPAQVLH 243 Query: 190 --SYCFQNP-KWRLSVQTHKFIG 209 + C + R+ QTHK IG Sbjct: 244 WQALCKTRLKQVRVIPQTHKMIG 266 >gi|229195638|ref|ZP_04322404.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus m1293] gi|228587887|gb|EEK45939.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus m1293] Length = 220 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 79/220 (35%), Gaps = 46/220 (20%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P+L ++ L+ L + G A+ET G+ + ID I +SPK Sbjct: 51 IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLEIDEITISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER------------FSLQPM--D 177 Q+L V ++ + + +DFE F LQ D Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEYAVKMHERYPDVPFFLQVGNDD 170 Query: 178 GPFLEENT---NLAISY---------CFQNPKWRLSVQTH 205 +++ L Y C + ++ Q H Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIEKAVNCKEMNNAKVLPQLH 210 >gi|228932724|ref|ZP_04095596.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826929|gb|EEM72691.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 220 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 20/159 (12%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P+L ++ L+ L + G A+ET G+ + ID I +SPK Sbjct: 51 IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170 Q+L V ++ + + +DFE Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEY 149 >gi|326774406|ref|ZP_08233671.1| Radical SAM domain protein [Streptomyces cf. griseus XylebKG-1] gi|326654739|gb|EGE39585.1| Radical SAM domain protein [Streptomyces cf. griseus XylebKG-1] Length = 244 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 61/159 (38%), Gaps = 22/159 (13%) Query: 4 YSIKEIFLTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 ++EIF + QGEG GR A F RF CNL C CD+ Sbjct: 15 LPVQEIFGPVPQGEGPFMGRRACFVRFGRCNL-----------HCPPCDSKATWDSSRYD 63 Query: 63 GRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 R + + I + VLTGGEPL+ Q Q L EI VETN Sbjct: 64 LRQTCPPRTVEDIAQTAAAHGAGSGITVLTGGEPLMWQRSTAWAQLLQDLPGEIHVETNA 123 Query: 121 TIEPPQ----GIDWICVSPKAGCDLKIKGGQ-ELKLVFP 154 TI + VSPK G ++ G E K + P Sbjct: 124 TIAADPVTTGRVAHFSVSPKIG---RMGGADPEKKRLVP 159 >gi|229138128|ref|ZP_04266726.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus BDRD-ST26] gi|228645473|gb|EEL01707.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus BDRD-ST26] Length = 220 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 79/220 (35%), Gaps = 46/220 (20%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P+L ++ L+ L + G A+ET G+ + ID I +SPK Sbjct: 51 IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLEIDEITISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER------------FSLQPM--D 177 Q+L V ++ + + +DFE F LQ D Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEYAVKMHERYPEVPFFLQVGNDD 170 Query: 178 GPFLEENT---NLAISY---------CFQNPKWRLSVQTH 205 +++ L Y C + ++ Q H Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIEKAVNCKEMNNAKVLPQLH 210 >gi|294496219|ref|YP_003542712.1| radical SAM protein [Methanohalophilus mahii DSM 5219] gi|292667218|gb|ADE37067.1| Radical SAM domain protein [Methanohalophilus mahii DSM 5219] Length = 239 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 58/153 (37%), Gaps = 25/153 (16%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-----DFV 55 M+ + EIF +QGEG + G F RF GCNL C +CDT D Sbjct: 1 METKPVSEIFCAVQGEGPYVGVRQAFVRFVGCNL-----------DCSYCDTPLDEPDHC 49 Query: 56 GIQGTKG----GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111 + G + + A IEE LTGGEPLL I+ L Sbjct: 50 LFEKVPGSGEFEKLSPMLCASDIEE-RTRAFVNLHSVSLTGGEPLLHA--EFIRGL-DLP 105 Query: 112 FEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144 + +ETN T+ I V D+K+ Sbjct: 106 APVYLETNMTLPEKAAIVKDSVD-YVAGDVKLP 137 >gi|254779534|ref|YP_003057640.1| hypothetical protein HELPY_0917 [Helicobacter pylori B38] gi|254001446|emb|CAX29441.1| Conserved hypothetical protein [Helicobacter pylori B38] Length = 251 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 54/214 (25%), Positives = 80/214 (37%), Gaps = 25/214 (11%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILNDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112 K + LIE + +LTGGEP L + P LI L ++ Sbjct: 60 PKFKETWDYYNDPKPLIERLEDLAPNYKHFDFILTGGEPSLYFNNPILISVLEHFYRKKI 119 Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 + VE+NG+I P +S K L+ +E K + + + N Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----KESKRIHLKALQNILNNAKSVH 175 Query: 169 ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202 +F L + I QN RLS+ Sbjct: 176 FKFVL------ESQNAAQSIIE--IQNLLKRLSL 201 >gi|270157549|ref|ZP_06186206.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|289164069|ref|YP_003454207.1| hypothetical protein LLO_0725 [Legionella longbeachae NSW150] gi|269989574|gb|EEZ95828.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|288857242|emb|CBJ11067.1| hypothetical protein LLO_0725 [Legionella longbeachae NSW150] Length = 291 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 45/210 (21%), Positives = 75/210 (35%), Gaps = 52/210 (24%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 + F TLQGEG G A F R + CNL C FCDT F + + Sbjct: 23 VTSRFFTLQGEGPFRGHPAYFIRLAKCNL-----------ACSFCDTYF---DSGEWRNF 68 Query: 66 N--VDQLADLIEEQ----------WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113 +++ +IE+ W G + V+TGGEP LQ ++ + + F+ Sbjct: 69 TSLLEEADQVIEDFFKNRNLPPPSWAQGLTKKMVLVITGGEPSLQQNLSAFLDIAQPYFQ 128 Query: 114 -IAVETNG--TIEPPQGIDWICVSPK------------AGCDLKIKGGQELKLV------ 152 +E+NG + + VSPK ++ LK V Sbjct: 129 STQIESNGICVLSDLPKSTTLVVSPKCLEKEGKVIRYLKPNPKMLERADCLKFVISAPED 188 Query: 153 -----FPQVNVSPENYIGFDFERFSLQPMD 177 + + + + ++ + PM+ Sbjct: 189 NQYAPYSDIPLWAHEWAKKRNKKIFISPMN 218 >gi|330506424|ref|YP_004382852.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6] gi|328927232|gb|AEB67034.1| radical SAM domain protein [Methanosaeta concilii GP-6] Length = 185 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 50/149 (33%), Positives = 65/149 (43%), Gaps = 34/149 (22%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GR A+F R SGCNL C CDTD +V +L IE Sbjct: 1 MGRPALFIRLSGCNL-----------NCEGCDTDL-----KPSLDLSVLELLKRIE---- 40 Query: 80 TGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGT----IEPPQGIDWICV 133 +G+ ++TGGEP LQ V LI L RG EI +E+NGT ++ + I V Sbjct: 41 ---GQGKRVIITGGEPTLQMNELVDLICRLYSRGMEIHIESNGTNTIPLDILEKICCAVV 97 Query: 134 SPKAGCDLKI-----KGGQELKLVFPQVN 157 SPK G D + K LK V + + Sbjct: 98 SPKRGSDFNLGFWANKSNVHLKFVLGKPD 126 >gi|229108898|ref|ZP_04238502.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus Rock1-15] gi|228674554|gb|EEL29794.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus Rock1-15] Length = 220 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 15/140 (10%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ +E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P L ++ L+ L + G A+ET G+ + ID I +SPK Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLFILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQV 156 Q L + ++ Sbjct: 111 PPSSTMKTDFQRLDAIIQKL 130 >gi|39996820|ref|NP_952771.1| radical SAM domain-containing protein [Geobacter sulfurreducens PCA] gi|39983708|gb|AAR35098.1| radical SAM domain protein [Geobacter sulfurreducens PCA] gi|298505829|gb|ADI84552.1| 7-carboxy-7-deazaguanine synthase [Geobacter sulfurreducens KN400] Length = 250 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 63/257 (24%), Positives = 93/257 (36%), Gaps = 73/257 (28%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF------VGIQGTK 61 E+F ++QGEG G VF RF GCNL C +CDT I+ T Sbjct: 10 EVFSSVQGEGMLIGLRQVFIRFRGCNLT-----------CDYCDTPAGTPAEPCRIEQTP 58 Query: 62 GGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL--NKRG 111 G R ++D++A L+E +TGGEPLL+ D+ L+Q L + Sbjct: 59 GRRDFVPADNPVSLDRVAALVEGWQRGWPGVHDSISITGGEPLLRHDI-LMQWLPVLREH 117 Query: 112 FEIAVETNGTIE-----PPQGIDWICVSPKAGCDLKIKG-------GQELKLVFPQVNVS 159 + +ETNG + +D I G D+KI + + N Sbjct: 118 LPVYLETNGVMHAALGLVINHVDII------GMDIKIPSTSGCTDLWDDHRQFLEIANTR 171 Query: 160 P--------ENYIGFDFER-------------FSLQPMD------GPFLEENTNLAISYC 192 E ++ R LQP+ G + L C Sbjct: 172 RAFIKIVVGEETEDWEITRASEIIAGVNRDIPLILQPVTRAGDTLGIKPVKALELQELAC 231 Query: 193 FQNPKWRLSVQTHKFIG 209 + R+ QTH+F+G Sbjct: 232 RYLAEVRIIPQTHRFMG 248 >gi|147921309|ref|YP_684877.1| hypothetical protein RCIX33 [uncultured methanogenic archaeon RC-I] gi|110620273|emb|CAJ35551.1| conserved hypothetical protein [uncultured methanogenic archaeon RC-I] Length = 245 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 91/257 (35%), Gaps = 70/257 (27%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56 MK ++EIF+++QGEG + G F RF CNL +C +CDT Sbjct: 1 MKA-PVREIFVSVQGEGPYVGYRQAFVRFPKCNL-----------ECLYCDTAKDWDSNK 48 Query: 57 ---IQGTKG-GRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQALNKR 110 ++ T G G + ++ E++ + LTGGEPLL I+ L Sbjct: 49 KCMVEKTPGSGDFAEEENPITPGRLLTIAERDPKIHSISLTGGEPLLY--GSFIKELKGA 106 Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP---------------- 154 + + +ETN T+ P D V D K+K + K + Sbjct: 107 KYPLYLETNMTL-PEGAKDVKDVVKIVSGDFKLKAHCDFKNQYEKYFNATARSFSILRRT 165 Query: 155 -------QVNVSPE----------NYIGFDFERFSLQP---------MDGPFLEENTNLA 188 ++ V+P+ + I LQP + F+ + A Sbjct: 166 SFRDCFCKIIVTPDLEKEDLMHALDQIKGTISALVLQPVTPVGPVGQVSPKFVLDLQTAA 225 Query: 189 ISYCFQNPKWRLSVQTH 205 + R+ QTH Sbjct: 226 MDVVE---DVRVIPQTH 239 >gi|15645550|ref|NP_207726.1| hypothetical protein HP0934 [Helicobacter pylori 26695] gi|2314068|gb|AAD07976.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 251 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 73/185 (39%), Gaps = 17/185 (9%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112 K ++ LIE + +LTGGEP L + P LI L ++ Sbjct: 60 PKFKTSWDYYNEPKPLIERLEDLAPNYKDFDFILTGGEPSLYFNNPILISVLEHFYRQKI 119 Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 + VE+NG+I P +S K L+ +E K + + + N Sbjct: 120 PLCVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EESKRIHLKALQNILNNAKSAH 175 Query: 169 ERFSL 173 +F L Sbjct: 176 FKFVL 180 >gi|14590526|ref|NP_142594.1| hypothetical protein PH0635 [Pyrococcus horikoshii OT3] gi|3257042|dbj|BAA29725.1| 254aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 254 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 101/267 (37%), Gaps = 71/267 (26%) Query: 1 MKLYSIKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCD-TDF 54 M + E+F + QGEGG GR +F RF+GC+L +C +CD + F Sbjct: 1 MVKLILAEVFNSWQGEGGSVPGSAFGRRQIFVRFAGCDL-----------RCIWCDSSQF 49 Query: 55 VGIQGTKGGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQV-- 99 + K R V+ + ++++ + TGGEP LQ+ Sbjct: 50 IDASKVKKWRIEVEPFSGRFEYRENPASIDEVVDAILKLDTGDLHSISYTGGEPTLQIEG 109 Query: 100 DVPLIQALNKRGFEIAVETNGTIE-----PPQGIDWICV-----SPKAGCD---LKIKGG 146 L++ + GF+ +ET+G D+ V S +A D L +K Sbjct: 110 LYILMERMKGLGFDNFLETHGGHPELIKRVSYLTDYASVDIKDESARASRDWRGLVLKEV 169 Query: 147 QELKL-------VFPQVNVSPENYIGFDFERFS-----------LQP-----MDGPFLEE 183 + +K+ V+ ++ V+ E + ++ +QP + +L + Sbjct: 170 ESIKILKEAGAKVYAKLVVTRET--KLENVKWYANLLKGVAPLAIQPKEPMDISMEYLMK 227 Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210 A + LS Q HK++ + Sbjct: 228 LYREA-ARIMGKKNVGLSFQVHKYLKV 253 >gi|317011141|gb|ADU84888.1| hypothetical protein HPSA_04520 [Helicobacter pylori SouthAfrica7] Length = 251 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 13/157 (8%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL G E CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFGCETLLNDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITG-EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE--- 113 K ++ + LIE + +LTGGEP L + P++ ++ + + Sbjct: 60 PKFKTSWDYYNEPSSLIERLVNLAPSYKDFDFILTGGEPSLHFNNPILTSVLEHFYHKKI 119 Query: 114 -IAVETNGTI----EPPQGIDWICVSPKAGCDLKIKG 145 + VE+NG+I P +S K L+ + Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEQES 156 >gi|229102041|ref|ZP_04232754.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus Rock3-28] gi|228681428|gb|EEL35592.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus Rock3-28] Length = 213 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 15/135 (11%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +F R +GC+ C +CD+ F G+ + D+ E G + Sbjct: 1 MFIRTAGCDY-----------SCSWCDSAFTW-DGSAKDQIRQMPAEDIWNELVEIGGEN 48 Query: 85 GRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPKAGCDL 141 + ++GG P LL+ L+ L + G A+ET G+ + ID I +SPK Sbjct: 49 FSHVTISGGNPVLLKNIESLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPKPPSSG 108 Query: 142 KIKGGQELKLVFPQV 156 Q+L V ++ Sbjct: 109 MKTDYQKLDAVIQKL 123 >gi|73667685|ref|YP_303700.1| hypothetical protein Mbar_A0135 [Methanosarcina barkeri str. Fusaro] gi|72394847|gb|AAZ69120.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 258 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 22/127 (17%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I+E+F ++QGEG + G F RFSGCNL C +CDTDF + Sbjct: 10 PIREVFCSVQGEGPYVGARQAFVRFSGCNL-----------NCNYCDTDFSNPGTCNYEQ 58 Query: 65 YNVDQLADLIE--------EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 + + I+ E I + LTGGEPL+ D I+ LN + + Sbjct: 59 VEGSGIFEKIKNPVSISQLESMIRPFNKLHSVSLTGGEPLMHAD--FIEKLNLTS-PLYL 115 Query: 117 ETNGTIE 123 E+N T+ Sbjct: 116 ESNMTLP 122 >gi|108563339|ref|YP_627655.1| hypothetical protein HPAG1_0914 [Helicobacter pylori HPAG1] gi|107837112|gb|ABF84981.1| hypothetical protein HPAG1_0914 [Helicobacter pylori HPAG1] Length = 251 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 53/214 (24%), Positives = 82/214 (38%), Gaps = 25/214 (11%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57 MKL + E F +LQGEG + G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKNIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112 K ++ LIE + +LTGGEP L + P LI L ++ Sbjct: 60 PKFKTSWDYYNEPKPLIERLVNLAPNYKHFDFILTGGEPSLYFNNPILISVLEHFYRQKI 119 Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 + VE+NG+I P +S K L+ +E K + + + N Sbjct: 120 PLCVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EESKRINLKALQNILNNAKSAH 175 Query: 169 ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202 +F L + I QN +LS+ Sbjct: 176 FKFVL------ESQNAAQSIIE--IQNLLKQLSL 201 >gi|18977649|ref|NP_579006.1| hypothetical protein PF1277 [Pyrococcus furiosus DSM 3638] gi|18893373|gb|AAL81401.1| hypothetical protein PF1277 [Pyrococcus furiosus DSM 3638] Length = 254 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 95/268 (35%), Gaps = 75/268 (27%) Query: 3 LYSIK--EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DF 54 + + EIF + QGEGG GR +F RF+GC+L +C +CD+ + Sbjct: 1 MVKVILGEIFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------RCTYCDSRKY 49 Query: 55 VGIQGTKGGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQV-- 99 + + K R V+ + ++I+ + TGGEP LQ+ Sbjct: 50 IDPRSVKKYRVEVEPFSGKFKYFNNPVDVEEVIKWITKLDTGDIHSISYTGGEPTLQILG 109 Query: 100 DVPLIQALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIKGGQE----LKLVFP 154 L++ + G++ +ET+G + I ++ A D+K + KLV Sbjct: 110 LASLMEKAKELGYDNFLETHGGHPHLIKKIAYLT--DYASVDIKDESANATKDWRKLVVN 167 Query: 155 QV-------NVSPENYIGFDFER-------------------FSLQPMDGPFLEENTNLA 188 ++ + Y+ R +QP + + Sbjct: 168 EIASTKILKEAGAKVYVKLVVTRETRIENVRWYAEMLKGIAPMVIQPKEPMDMP--IKKV 225 Query: 189 ISY------CFQNPKWRLSVQTHKFIGI 210 + + LS Q HK++G+ Sbjct: 226 MDFYNVAAKIMGKKNVSLSFQVHKYLGV 253 >gi|317177720|dbj|BAJ55509.1| hypothetical protein HPF16_0912 [Helicobacter pylori F16] Length = 251 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 53/214 (24%), Positives = 83/214 (38%), Gaps = 25/214 (11%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112 K ++ LIE + +LTGGEP L + P LI L + Sbjct: 60 PKFKETWDYYNEPKSLIERLEDLAPNYKHFDFILTGGEPSLYFNNPILISVLEHFYHKKI 119 Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 + VE+NG+I P +S K L+ +E K + + + N Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EESKRINLKALQNILNNAKSAH 175 Query: 169 ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202 +F L+ +N +I+ K +LS+ Sbjct: 176 FKFVLE-------SKNAAQSIAEIKNLLK-QLSL 201 >gi|317012742|gb|ADU83350.1| hypothetical protein HPLT_04740 [Helicobacter pylori Lithuania75] Length = 251 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 52/214 (24%), Positives = 80/214 (37%), Gaps = 25/214 (11%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILNDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112 K + LIE + +LTGGEP L + P LI L ++ Sbjct: 60 PKFKETWDYYNDPKPLIERLENLAPNYKHFDFILTGGEPSLYFNNPILISVLEHFYRKKI 119 Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 + VE+NG+I P +S K L+ +E K + + + + Sbjct: 120 PLCVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EESKRIHLKALQNILDNAKSVH 175 Query: 169 ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202 +F L + I QN +LS+ Sbjct: 176 FKFVL------ESQNAAQSIIE--IQNLLKQLSL 201 >gi|229010738|ref|ZP_04167935.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus mycoides DSM 2048] gi|228750412|gb|EEM00241.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus mycoides DSM 2048] Length = 220 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 15/140 (10%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIKQMTPEDIWNELVE 50 Query: 80 TGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P LL+ L+ L + G AVET G+ + ID + +SPK Sbjct: 51 IGGENFSHVTISGGNPVLLKNMQFLLSILKENGMRTAVETQGSKWQDWLLQIDEVTISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQV 156 L V ++ Sbjct: 111 PPSSTMKTDFHMLDSVIHKL 130 >gi|298675035|ref|YP_003726785.1| radical SAM domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298288023|gb|ADI73989.1| Radical SAM domain protein [Methanohalobium evestigatum Z-7303] Length = 239 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 55/248 (22%), Positives = 87/248 (35%), Gaps = 57/248 (22%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 I EIF ++QGEG + G VF RF GCNL QC++CDT + + Sbjct: 4 PISEIFCSVQGEGPYVGVRQVFVRFIGCNL-----------QCQYCDTQREYVDFCRFEE 52 Query: 65 YNVDQLADLI--------EEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 +LI + I LTGGEPL+ D I+ L + + + Sbjct: 53 NPGSDEFELIPNPLDVNTVAESIESFSSVHSVSLTGGEPLIHAD--FIKNL-QISAPLYL 109 Query: 117 ETNGTIE-----PPQGIDWICVSPKAGCD----------------LKIKGGQELKLVFPQ 155 E+N T+ + ++ K + KI E + F + Sbjct: 110 ESNMTLPEMAKKVKDKVSFVSGDVKIINEFECDDFETHIEKTIDSFKILKTTESRDCFCK 169 Query: 156 VNVSPENYIGFDFERF----------SLQPMDGPFLEENTN--LAISYCF--QNPKWRLS 201 + V I + + LQP+ + + L I + ++ Sbjct: 170 IVVLENTKIEYVLDIMDKISDYISGAILQPVTQGYNRPSVQHLLQIQKQLLDKGINTKVI 229 Query: 202 VQTHKFIG 209 QTHK +G Sbjct: 230 PQTHKMLG 237 >gi|317178717|dbj|BAJ56505.1| hypothetical protein HPF30_0408 [Helicobacter pylori F30] Length = 251 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 80/210 (38%), Gaps = 24/210 (11%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVG- 56 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDETLTGCDSLYAVH 59 Query: 57 --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALN---KR 110 + T + L + +E+ + +LTGGEP L + P LI L + Sbjct: 60 PKFKETWDYYHEPKSLIERLEDLAPN--YKNFDFILTGGEPSLYFNNPILISVLEHFYHK 117 Query: 111 GFEIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 + VE+NG+I P +S K L+ +E K + + + N Sbjct: 118 KIPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EESKRINLKALQNILNNAKS 173 Query: 167 DFERFSLQPMDGPFLEENTNLAISYCFQNP 196 +F L + ++ + Q P Sbjct: 174 AHFKFVL---ESKNAAQSIAEIQNLLKQLP 200 >gi|57866337|ref|YP_187967.1| exsD protein [Staphylococcus epidermidis RP62A] gi|57636995|gb|AAW53783.1| exsD protein [Staphylococcus epidermidis RP62A] Length = 212 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 69/191 (36%), Gaps = 33/191 (17%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +F R +GC+ +C +CD+ F G+ + ++ + G Sbjct: 1 MFVRTAGCDY-----------RCSWCDSAFTW-DGSAKEDIKLMTAEEIYDALLEIGGHR 48 Query: 85 GRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPKAGCDL 141 + ++GG P L++ L+ + A+ET G+ ID + +SPK Sbjct: 49 FNHVTISGGNPALIKGIQELVDLFEDKHIYTALETQGSRFQSWMTQIDDLTISPKPPSSG 108 Query: 142 KIKGGQELKLVFPQ-------VNVSPENYIGFDFER----------FSLQPMDGPFLEEN 184 + L V Q + V + +DF + F LQ + P+L++N Sbjct: 109 MKTNLEILDSVINQCTFHSLNLKVVIFDDADYDFAKLIHHRYPNIPFYLQ-VGNPYLDDN 167 Query: 185 TNLAISYCFQN 195 + + Sbjct: 168 VDQHTDKLLER 178 >gi|308062249|gb|ADO04137.1| hypothetical protein HPCU_04900 [Helicobacter pylori Cuz20] Length = 251 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 72/185 (38%), Gaps = 17/185 (9%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112 K ++ LIE + +LTGGEP L + P LI L + Sbjct: 60 PKFKETWDYYNEPKSLIERLEDLAPNYKHFDFILTGGEPSLYFNNPILISVLEHFYHKKI 119 Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 + VE+NG+I P +S K L+ +E K + + + N Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EESKRINLKALQNILNNAKSAH 175 Query: 169 ERFSL 173 +F L Sbjct: 176 FKFVL 180 >gi|210135123|ref|YP_002301562.1| radical SAM domain-containing protein [Helicobacter pylori P12] gi|210133091|gb|ACJ08082.1| radical SAM domain-containing protein [Helicobacter pylori P12] Length = 251 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 49/199 (24%), Positives = 76/199 (38%), Gaps = 19/199 (9%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILNDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112 K + LIE + +LTGGEP L + P LI L ++ Sbjct: 60 PKFKETWDYYNDPKPLIERLEDLAPNYKHFDFILTGGEPSLYFNNPILISVLEHFYRQKI 119 Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 + VE+NG+I P +S K L+ +E K + + + N Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----KESKRINLKALQNILNNAKSAH 175 Query: 169 ERFSLQPMDGPFLEENTNL 187 +F L+ + T + Sbjct: 176 FKFVLE--SQNAAQSITEI 192 >gi|229057068|ref|ZP_04196460.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus AH603] gi|229132239|ref|ZP_04261095.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus BDRD-ST196] gi|229166276|ref|ZP_04294035.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus AH621] gi|228617221|gb|EEK74287.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus AH621] gi|228651177|gb|EEL07156.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus BDRD-ST196] gi|228720209|gb|EEL71788.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus cereus AH603] Length = 220 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 15/140 (10%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + D+ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIKQMTPEDIWNELVE 50 Query: 80 TGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P LL+ L+ L + G AVET G+ + ID + +SPK Sbjct: 51 IGGENFSHVTISGGNPVLLKNMQFLLSILKENGMRTAVETQGSKWQDWLLQIDEVTISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQV 156 Q L V ++ Sbjct: 111 PPSSTMKTDFQMLDSVIHKL 130 >gi|317182232|dbj|BAJ60016.1| hypothetical protein HPF57_0942 [Helicobacter pylori F57] Length = 251 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 61/153 (39%), Gaps = 13/153 (8%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112 K ++ LIE + +LTGGEP L + P LI L + Sbjct: 60 PKFKETWDYYNEPKSLIERLEDLAPNYKHFDFILTGGEPSLYFNNPILISVLEHFYHKKI 119 Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDL 141 + VE+NG+I P +S K L Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSL 152 >gi|261838307|gb|ACX98073.1| hypothetical protein KHP_0871 [Helicobacter pylori 51] Length = 251 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 72/185 (38%), Gaps = 17/185 (9%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112 K ++ LIE + +LTGGEP L + P LI L + Sbjct: 60 PKFKETWDYYNEPKSLIERLEDLAPNYKNFDFILTGGEPSLYFNNPILISVLEHFYHKKI 119 Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 + VE+NG+I P +S K L+ +E K + + + N Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EESKRINLKALQNILNNAKSAH 175 Query: 169 ERFSL 173 +F L Sbjct: 176 FKFVL 180 >gi|261839719|gb|ACX99484.1| hypothetical protein HPKB_0901 [Helicobacter pylori 52] Length = 251 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 61/153 (39%), Gaps = 13/153 (8%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112 K ++ LIE + +LTGGEP L + P LI L + Sbjct: 60 PKFKETWDYYNEPKSLIERLEDLAPNYKHFDFILTGGEPSLYFNNPILISVLEHFYHKKI 119 Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDL 141 + VE+NG+I P +S K L Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSL 152 >gi|207091722|ref|ZP_03239509.1| hypothetical protein HpylHP_00921 [Helicobacter pylori HPKX_438_AG0C1] Length = 251 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 71/185 (38%), Gaps = 17/185 (9%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112 K + LIE + +LTGGEP L + P LI L + Sbjct: 60 PKFKTSWDYYNDPKPLIERLEDLAPNYKHFDFILTGGEPSLYFNNPILISVLEHFYHKKI 119 Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 + VE+NG+I P +S K L+ +E K + + + N Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EESKRIHLKALQNILNNAKSAH 175 Query: 169 ERFSL 173 +F L Sbjct: 176 FKFVL 180 >gi|315586878|gb|ADU41259.1| radical SAM domain protein [Helicobacter pylori 35A] Length = 251 Score = 99.7 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 72/185 (38%), Gaps = 17/185 (9%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112 K ++ LIE + +LTGGEP L + P LI L + Sbjct: 60 PKFKETWDYYNEPKSLIERLEDLAPNYKNFDFILTGGEPSLYFNNPILISVLEHFYHKKI 119 Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 + VE+NG+I P +S K L+ +E K + + + N Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EESKRINLKALQNILNNAKSAH 175 Query: 169 ERFSL 173 +F L Sbjct: 176 FKFVL 180 >gi|48478135|ref|YP_023841.1| 6-pyruvoyltetrahydropterin 2'-reductase [Picrophilus torridus DSM 9790] gi|48430783|gb|AAT43648.1| 6-pyruvoyltetrahydropterin 2'-reductase [Picrophilus torridus DSM 9790] Length = 249 Score = 99.7 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 25/143 (17%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQ-------------DRLSAQCRF- 49 + ++F ++QGEG +AG+ A F RF CNL+ G E+ + S + Sbjct: 3 IRLVDLFYSIQGEGRYAGKPAFFIRFPECNLFCGLEKPLKPGNYDQEYINNLKSVNAGWV 62 Query: 50 CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQAL 107 CDT + + G + +++ + D I V TGGEPL+ L I A+ Sbjct: 63 CDTMAQWL--SNGFQIDINDIVDYISRL----SSGSYNIVFTGGEPLINRSNILKIIDAV 116 Query: 108 NKRG---FEIAVETNGTIEPPQG 127 N + + +ETNGT+EP + Sbjct: 117 NSKNLKPYIYEIETNGTMEPIED 139 >gi|208434836|ref|YP_002266502.1| hypothetical protein HPG27_882 [Helicobacter pylori G27] gi|208432765|gb|ACI27636.1| hypothetical protein HPG27_882 [Helicobacter pylori G27] Length = 251 Score = 99.7 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 17/185 (9%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQALNKRGFE--- 113 K ++ LIE + +LTGGEP L + P++ ++ + + Sbjct: 60 PKFKTSWDYYNEPKPLIERLENLAPNYKHFDFILTGGEPSLYFNNPILLSVLEHFYHKKI 119 Query: 114 -IAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 + VE+NG+I P +S K L+ QE K + + + N Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----QESKRINLKALQNILNNAKSAH 175 Query: 169 ERFSL 173 +F L Sbjct: 176 FKFVL 180 >gi|317014342|gb|ADU81778.1| hypothetical protein HPGAM_04815 [Helicobacter pylori Gambia94/24] Length = 251 Score = 99.7 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 47/202 (23%), Positives = 77/202 (38%), Gaps = 23/202 (11%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGQRIGKPSLFLRLGGCNLSCKGFNCKTLFNDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQALNKRGFE--- 113 + + LIE + +LTGGEP L + P++ ++ + + Sbjct: 60 PKFQTSWDYYSEPKPLIERLVNLAPNYKDFDLILTGGEPSLYFNNPILLSVLEHFYHKKI 119 Query: 114 -IAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 + VE+NG+I P +S K L+ QE K + + + N+ Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----QESKRINLKALQNILNHAKSVH 175 Query: 169 ERFSLQPMDGPFLEENTNLAIS 190 +F L + T I Sbjct: 176 FKFVL------ESQNATQSIIE 191 >gi|282163368|ref|YP_003355753.1| hypothetical protein MCP_0698 [Methanocella paludicola SANAE] gi|282155682|dbj|BAI60770.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 243 Score = 99.3 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 89/260 (34%), Gaps = 78/260 (30%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56 MK I+EIF++ QGEG + G +F RF CNL +C++CDT Sbjct: 1 MKS-PIREIFVSAQGEGPYVGYRQLFVRFPKCNL-----------ECQYCDTPKDWSSES 48 Query: 57 ---IQGTKGG------RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107 ++ G ++ + L +I+ + LTGGEPLL I+ L Sbjct: 49 KCRVESKPGEFVEYDNPFSSEHLLSVIKLY-----ERIHSVSLTGGEPLLYAK--FIKEL 101 Query: 108 NKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLKIKGGQEL------------- 149 F + +E+N T+ + ++ K KG E Sbjct: 102 KTSKFPLYLESNMTLPEGAKEVKDVVKYVSGDFKLKDQCDFKGHYEKYFNDTARSFSILR 161 Query: 150 ---------KLVFPQVNVSPE------NYIGFDFERFSLQPM---------DGPFLEENT 185 K++ + ++ E + I LQP+ L E Sbjct: 162 QTSFRDCFCKIIVSE-DIDREDMMHAVDQIKDCITELILQPVTPTGGVEAASSKLLLELQ 220 Query: 186 NLAISYCFQNPKWRLSVQTH 205 + A+ R+ QTH Sbjct: 221 DKALEKVE---NVRIIPQTH 237 >gi|308184717|ref|YP_003928850.1| hypothetical protein HPSJM_04750 [Helicobacter pylori SJM180] gi|308060637|gb|ADO02533.1| hypothetical protein HPSJM_04750 [Helicobacter pylori SJM180] Length = 251 Score = 99.3 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 17/185 (9%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITG-EKEGRYCVLTGGEPLLQVDVPL----IQALNKRGF 112 + ++ LIE + +LTGGEP L + P+ ++ + + Sbjct: 60 PKFQTSWDYYNEPKPLIERLVNLAPSYKDFDFILTGGEPSLYFNNPILLSVLEHFHHKKI 119 Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 + VE+NG+I P +S K L+ QE K + + + N Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----QESKRINLKALQNILNNAKSAH 175 Query: 169 ERFSL 173 +F L Sbjct: 176 FKFVL 180 >gi|217033986|ref|ZP_03439409.1| hypothetical protein HP9810_883g56 [Helicobacter pylori 98-10] gi|216943619|gb|EEC23067.1| hypothetical protein HP9810_883g56 [Helicobacter pylori 98-10] Length = 251 Score = 99.3 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 61/153 (39%), Gaps = 13/153 (8%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILNDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112 K ++ LIE + +LTGGEP L + P LI L + Sbjct: 60 PKFKETWDYYNEPKSLIERLEDLAPNYKNFDFILTGGEPSLYFNNPILISVLEHFYHKKI 119 Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDL 141 + VE+NG+I P +S K L Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSL 152 >gi|317009590|gb|ADU80170.1| radical SAM domain-containing protein [Helicobacter pylori India7] Length = 251 Score = 98.9 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 48/199 (24%), Positives = 75/199 (37%), Gaps = 19/199 (9%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTPFNDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITG-EKEGRYCVLTGGEPLLQVDVP-LIQALN---KRGF 112 K + LIE + +LTGGEP L + P L+ L ++ Sbjct: 60 PKFKETWDYYNDPKPLIERLVNLAPSYKDFDFILTGGEPSLYFNNPILLSVLEHFYRKKI 119 Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 + VE+NG+I P +S K L+ +E K + + + N Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EESKRINLKALQNILNNAKSAH 175 Query: 169 ERFSLQPMDGPFLEENTNL 187 +F L + T + Sbjct: 176 FKFVLD--SQNAAQSITEI 192 >gi|325996217|gb|ADZ51622.1| Queuosine biosynthesis protein [Helicobacter pylori 2018] gi|325997811|gb|ADZ50019.1| Queuosine biosynthesis protein [Helicobacter pylori 2017] Length = 251 Score = 98.9 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 17/185 (9%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLFNDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQALNKRGFE--- 113 K ++ LIE + +LTGGEP L + P++ ++ + + Sbjct: 60 PKFKTSWDYYNEPKPLIERLVNLAPNYKDFDFILTGGEPSLYFNNPILLSVLEHFYHKKI 119 Query: 114 -IAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 + VE+NG+I P +S K L+ QE K + + + N Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----QESKRINLKALQNILNNAKSAH 175 Query: 169 ERFSL 173 +F L Sbjct: 176 FKFVL 180 >gi|307637623|gb|ADN80073.1| Queuosine Biosynthesis protein [Helicobacter pylori 908] Length = 251 Score = 98.9 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 17/185 (9%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLFNDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQALNKRGFE--- 113 K ++ LIE + +LTGGEP L + P++ ++ + + Sbjct: 60 PKFKTSWDYYNEPKPLIERLVNLAPNYKDFDFILTGGEPSLYFNNPILLSVLEHFYHKKI 119 Query: 114 -IAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 + VE+NG+I P +S K L+ QE K + + + N Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----QESKRINLKALQNILNNAKSAH 175 Query: 169 ERFSL 173 +F L Sbjct: 176 FKFVL 180 >gi|308183085|ref|YP_003927212.1| hypothetical protein HPPC_04700 [Helicobacter pylori PeCan4] gi|308065270|gb|ADO07162.1| hypothetical protein HPPC_04700 [Helicobacter pylori PeCan4] Length = 251 Score = 98.6 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 61/153 (39%), Gaps = 13/153 (8%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112 K ++ LIE + +LTGGEP L + P LI L + Sbjct: 60 PKFKETWDYYNEPKSLIERLEDLTPNYKHFDFILTGGEPSLYFNNPILISVLEHFYHKKI 119 Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDL 141 + VE+NG+I P +S K L Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSL 152 >gi|150401262|ref|YP_001325028.1| radical SAM domain-containing protein [Methanococcus aeolicus Nankai-3] gi|150013965|gb|ABR56416.1| Radical SAM domain protein [Methanococcus aeolicus Nankai-3] Length = 248 Score = 98.6 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 62/257 (24%), Positives = 87/257 (33%), Gaps = 65/257 (25%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS--GREQDRLSAQCRFCDTDFVGIQGTKGG 63 I E+F ++ GEG GR +F RF GC L E + CR + V G Sbjct: 2 ISEVFSSIMGEGKFIGRRYIFIRFKGCPLNCIYCDEYTKNDMPCRV---EEVSGSGIFKE 58 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121 N + +LIE + TGGEPLL D LN G + +E+NG Sbjct: 59 YINTAENNNLIEIINKIKTPDLFAISFTGGEPLLYADKIKEYSDILNDLGHKTHLESNG- 117 Query: 122 IEPPQGIDWICVSPKAGCDLKIKG----------------GQELKL-------------- 151 P I++ S D+K+K ELK Sbjct: 118 -MFPDKINYFDYS---SIDIKLKEHFDFNNFNSKKYDELYNNELKSIEKLYNLGSDVYGK 173 Query: 152 VFPQVNVSPENYIGF--------DFERFSLQPMDG-----PFLEENTNLAISYCFQNPKW 198 V N +PE D +QP+ ++N + C + Sbjct: 174 VVIMENTTPETVEQVAKDLSDIGDDIILCIQPVSPFKDIKSPSQQNLLKIMEVCGNH--- 230 Query: 199 RL--SV----QTHKFIG 209 L SV Q HK++G Sbjct: 231 -LGDSVICTSQIHKYLG 246 >gi|109947611|ref|YP_664839.1| hypothetical protein Hac_1076 [Helicobacter acinonychis str. Sheeba] gi|109714832|emb|CAJ99840.1| conserved hypothetical protein [Helicobacter acinonychis str. Sheeba] Length = 230 Score = 98.6 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 9/130 (6%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL G + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGQRIGKPSLFLRLGGCNLSCKGFGCKTLFNDEILIGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPL----IQALNKRGF 112 K ++ LIE + +LTGGEP L + P+ ++ +++ Sbjct: 60 PKFKKSWDYYNEPKPLIERLVHLTPNHKNFDFILTGGEPSLYFNNPILTSVLEHFHRKKI 119 Query: 113 EIAVETNGTI 122 + VE+NG+I Sbjct: 120 PLFVESNGSI 129 >gi|15611935|ref|NP_223586.1| hypothetical protein jhp0868 [Helicobacter pylori J99] gi|4155435|gb|AAD06440.1| putative [Helicobacter pylori J99] Length = 251 Score = 98.6 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 13/157 (8%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLFNDEILTGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQALNKRGFE--- 113 K ++ LIE + +LTGGEP L + P++ ++ + + Sbjct: 60 PKFKTSWDYYNEPKPLIERLVNLAPNYKDFDFILTGGEPSLYFNNPILLSVLEHFYHKKI 119 Query: 114 -IAVETNGTI----EPPQGIDWICVSPKAGCDLKIKG 145 + VE+NG+I P +S K L+ + Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEQES 156 >gi|75906966|ref|YP_321262.1| radical SAM family protein [Anabaena variabilis ATCC 29413] gi|75700691|gb|ABA20367.1| Radical SAM [Anabaena variabilis ATCC 29413] Length = 264 Score = 98.6 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 60/267 (22%), Positives = 90/267 (33%), Gaps = 78/267 (29%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ------ 58 + E+F +QGEG + G +F RF+ C+L +C FCD+ Sbjct: 12 RLVEVFSAIQGEGLNVGTRQIFIRFAFCDL-----------RCHFCDSAHTWNAPASCRI 60 Query: 59 ---------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 + + L + +E Q + + LTGGEPLL P +Q Sbjct: 61 ERSPGLRDFESHPNPVPLTTLIEWVERQNLPCLHDS--ISLTGGEPLLHA--PFLQEFLP 116 Query: 110 R-----GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK--GGQELKLVFPQV----NV 158 + G I +ET G P Q + G DLK+ G+ Q + Sbjct: 117 KVRSLTGLPIYLETGG-HRPEQLATILPYLDSVGMDLKLPSVSGESHWQAHSQFLQLCHS 175 Query: 159 SPENYIGF---------DFERFSL-----QPMDGPFLEENTNLAI-SYCFQNPK------ 197 E ++ + ER +L P FL+ T LA Q P Sbjct: 176 QSETFVKIIISHRTDLAELERAALLVADVSPEIPVFLQPVTPLAESDQFSQTPALAPAPA 235 Query: 198 ----WRLSV-----------QTHKFIG 209 W+ S+ QTHK + Sbjct: 236 DVLTWQTSMKRFLKYVRVVPQTHKMLN 262 >gi|188527756|ref|YP_001910443.1| hypothetical protein HPSH_04915 [Helicobacter pylori Shi470] gi|188143996|gb|ACD48413.1| hypothetical protein HPSH_04915 [Helicobacter pylori Shi470] Length = 251 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 73/187 (39%), Gaps = 21/187 (11%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVG- 56 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59 Query: 57 --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALN---KR 110 + T L + +E+ + +LTGGEP L + P LI L + Sbjct: 60 PKFKETWDYYNEPQSLIERLEDLTPN--YKNFDFILTGGEPSLYFNNPILISVLEHFYHK 117 Query: 111 GFEIAVETNGTIE----PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 + VE+NG+I P +S K L+ +E K + + + N Sbjct: 118 KIPLFVESNGSIFFEFNPILKELHFTLSVKLSFSLE----EESKRINLKALQNILNNAKS 173 Query: 167 DFERFSL 173 +F L Sbjct: 174 AHFKFVL 180 >gi|109947617|ref|YP_664845.1| hypothetical protein Hac_1082 [Helicobacter acinonychis str. Sheeba] gi|109714838|emb|CAJ99846.1| conserved hypothetical protein [Helicobacter acinonychis str. Sheeba] Length = 251 Score = 98.2 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 9/130 (6%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGI 57 MKL + E F +LQGEG G+ ++F R GCNL G + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGQRIGKPSLFLRLGGCNLSCKGFGCKTLFNDEILIGCDSLYAVH 59 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPL----IQALNKRGF 112 K ++ LIE + +LTGGEP L + P+ ++ +++ Sbjct: 60 PKFKKSWDYYNEPKPLIERLVHLTPNHKNFDFILTGGEPSLYFNNPILTSVLEHFHRKKI 119 Query: 113 EIAVETNGTI 122 + VE+NG+I Sbjct: 120 PLFVESNGSI 129 >gi|317052127|ref|YP_004113243.1| Radical SAM domain-containing protein [Desulfurispirillum indicum S5] gi|316947211|gb|ADU66687.1| Radical SAM domain protein [Desulfurispirillum indicum S5] Length = 240 Score = 98.2 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 87/250 (34%), Gaps = 58/250 (23%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ------G 59 I+E+F ++QGEG GR +F R GCNL C +CDT I Sbjct: 5 IQEMFWSVQGEGPRCGRPQLFVRLHGCNLT-----------CSYCDTPASLIPRAPQSFP 53 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALN-KRGFEIAV 116 G + ++ +TGGEPL Q D + L E+ + Sbjct: 54 WHGRTVPNPVPLEFLQTLVAPELPFVESVSITGGEPLCQGDFVAAFGRWLCQDMAMEVLL 113 Query: 117 ETNGTIE--PPQGIDWICVSPKAGCDLKIK-------GGQEL---------------KLV 152 ETNGT + D + DLK EL K++ Sbjct: 114 ETNGTFPGWLKENTDSFSL---VSADLKFPWAQQHRDTAGELLDFLQSRQQSCQDSCKII 170 Query: 153 FPQVNVSPE----NYIGFDFERF--SLQPM-----DGPFLEENTNLAISYCFQNPKWRLS 201 ++ +++ RF LQP+ +EE+ L +Y + + L Sbjct: 171 CDDAFLACASHWLDHMVERGARFPVVLQPLTAADGSCRGVEESMKLVRTYTERGLRIWLI 230 Query: 202 VQTHKFIGIR 211 Q H +G++ Sbjct: 231 PQMHHLLGVQ 240 >gi|291277034|ref|YP_003516806.1| hypothetical protein HMU08200 [Helicobacter mustelae 12198] gi|290964228|emb|CBG40077.1| putative hypothetical protein [Helicobacter mustelae 12198] Length = 286 Score = 97.8 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 56/163 (34%), Gaps = 41/163 (25%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ---CRFCDTDFVGI 57 M++ I EIF +LQGEG G +VF R CNL +RL + CD+ + Sbjct: 1 MQILKISEIFYSLQGEGSAIGMPSVFVRVGLCNLRCKGFGERLRYRGEEILGCDSIYAAN 60 Query: 58 QGTKGGRYNVDQLADLIEEQWIT----------------------------------GEK 83 + + +LI + Sbjct: 61 PKFQEEWREFESSKELISAIFAAVCGNLGSSVDAALRGEAGDFSSAQVGGDALLEAPEPL 120 Query: 84 EGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNGTI 122 VLTGGEP L P I+ R I+VE+NG++ Sbjct: 121 PPFDIVLTGGEPSLYFQNPALLGAIEFFLARHHRISVESNGSV 163 >gi|21226857|ref|NP_632779.1| hypothetical protein MM_0755 [Methanosarcina mazei Go1] gi|20905160|gb|AAM30451.1| conserved protein [Methanosarcina mazei Go1] Length = 255 Score = 97.8 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 22/127 (17%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64 +++E+F ++QGEG + G F RFSGCNL C +CDT+F R Sbjct: 10 NLREVFCSVQGEGPYVGMRQAFVRFSGCNL-----------SCNYCDTNFRNPGTYDYER 58 Query: 65 YNVDQLADLIE--------EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 + + + E + K+ LTGGEPLL D I+ L + + Sbjct: 59 VEGSGVFEKVSNPVNIEKLESMLQPFKDLHSVSLTGGEPLLHAD--FIEKL-NLSVPLYL 115 Query: 117 ETNGTIE 123 E+N T+ Sbjct: 116 ESNMTLP 122 >gi|308063762|gb|ADO05649.1| hypothetical protein HPSAT_04565 [Helicobacter pylori Sat464] Length = 251 Score = 97.4 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 17/155 (10%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVG- 56 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59 Query: 57 --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALN---KR 110 + T L + +E+ + +LTGGEP L + P LI L + Sbjct: 60 PKFKETWDYYNEPKSLIERLEDLTPN--YKNFDFILTGGEPSLYFNNPILISVLEHFYHK 117 Query: 111 GFEIAVETNGTI----EPPQGIDWICVSPKAGCDL 141 + VE+NG+I P +S K L Sbjct: 118 KIPLFVESNGSIFFEFSPILKELHFTLSVKLSFSL 152 >gi|322667095|gb|EFY63267.1| hypothetical protein SEEM507_17615 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] Length = 81 Score = 97.4 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 14/89 (15%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTW-DKLSDR 50 Query: 64 RYNVDQLADLIEE--QWITGEKEGRYCVL 90 ++ + +E +W E V+ Sbjct: 51 EVSLFSILAKTKESDKWGAASSEDLLAVI 79 >gi|91773249|ref|YP_565941.1| radical SAM family Fe-S protein [Methanococcoides burtonii DSM 6242] gi|91712264|gb|ABE52191.1| Fe-S protein, radical SAM family [Methanococcoides burtonii DSM 6242] Length = 238 Score = 97.0 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 50/127 (39%), Gaps = 22/127 (17%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD--------FVG 56 I EIF ++QGEG H G F RF GCNL C +CDT+ F Sbjct: 4 PISEIFCSVQGEGPHVGVRQAFVRFIGCNL-----------NCSYCDTEPADPSVCMFER 52 Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 G+ + L + + LTGGEPLL D I + + + Sbjct: 53 TPGSNSFENIPNPLVTSQVSELLGNYGNIHSVSLTGGEPLLHAD--FISKM-DIPHLLYL 109 Query: 117 ETNGTIE 123 E+N T+ Sbjct: 110 ESNMTLP 116 >gi|296284595|ref|ZP_06862593.1| coenzyme PQQ synthesis protein, conjectural [Citromicrobium bathyomarinum JL354] Length = 208 Score = 96.6 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 26/132 (19%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------QGTK 61 EIF ++QGEG AG F R S CNL C +CDT + Sbjct: 22 EIFASVQGEGPSAGEPTAFVRLSRCNL-----------ACVWCDTAYTWHFAGDERPHRS 70 Query: 62 GGRYN------VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115 G ++ ++ D+ G+ R V+TGGEP+LQ + Sbjct: 71 GQTFDRKANQVTLEVEDVAARIAALGQ---RRLVVTGGEPMLQAPALAQLLALLPDVTVE 127 Query: 116 VETNGTIEPPQG 127 +ETNGT P Sbjct: 128 IETNGTAFPRPS 139 >gi|317180219|dbj|BAJ58005.1| hypothetical protein HPF32_0423 [Helicobacter pylori F32] Length = 251 Score = 96.2 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 17/155 (10%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVG- 56 MKL + E F +LQGEG G+ ++F R GCNL + CD+ + Sbjct: 1 MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILYDEILMGCDSLYAVH 59 Query: 57 --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALN---KR 110 + T L + +E+ + +LTGGEP L + P LI L + Sbjct: 60 PKFKETWDYYNEPKSLIERLEDLTPN--YKNFDFILTGGEPSLYFNNPILISVLEHFYHK 117 Query: 111 GFEIAVETNGTI----EPPQGIDWICVSPKAGCDL 141 + VE+NG+I P +S K L Sbjct: 118 KIPLFVESNGSIFFEFSPILKELHFTLSVKLSFSL 152 >gi|289674681|ref|ZP_06495571.1| radical SAM family protein [Pseudomonas syringae pv. syringae FF5] Length = 76 Score = 95.9 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 20/93 (21%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 I EIF +LQGE AG VF R +GC L +C++CD+ + GT Sbjct: 4 TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 + L D++ + RY +TGG P Sbjct: 51 ----IQTLDDILGQ---VASYRPRYVCVTGGAP 76 >gi|17231653|ref|NP_488201.1| hypothetical protein alr4161 [Nostoc sp. PCC 7120] gi|17133296|dbj|BAB75860.1| alr4161 [Nostoc sp. PCC 7120] Length = 264 Score = 95.9 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 60/267 (22%), Positives = 89/267 (33%), Gaps = 78/267 (29%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ------ 58 + E+F +QGEG + G +F RF+ C+L +C FCD+ Sbjct: 12 RLVEVFSAIQGEGLNVGTRQIFIRFAFCDL-----------RCHFCDSAHTWNAPASCRI 60 Query: 59 ---------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 + + L + +E Q + + LTGGEPLL P +Q Sbjct: 61 ERSPGLRDFESHPNPVPLTTLIEWVERQNLPCLHDS--ISLTGGEPLLHA--PFLQEFLP 116 Query: 110 R-----GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK--GGQELKLVFPQVNV---- 158 + G I +ET G P Q + G DLK+ G+ Q Sbjct: 117 KVRSLTGLPIYLETGG-HRPEQLATILPYLDSVGMDLKLPSVSGESHWQAHSQFLQLCLT 175 Query: 159 SPENYIGF---------DFERFSL-----QPMDGPFLEENTNLAISYCFQNPK------- 197 E ++ + ER +L P FL+ T LA S F Sbjct: 176 QSETFVKIIISHRTNLAELERAALLVADVSPEIPVFLQPVTPLAESEQFSPTPALAPAPA 235 Query: 198 ----WRLSV-----------QTHKFIG 209 W+ S+ QTHK + Sbjct: 236 DVLTWQASMKRFLKYVRVVPQTHKMLN 262 >gi|78222867|ref|YP_384614.1| radical SAM family protein [Geobacter metallireducens GS-15] gi|78194122|gb|ABB31889.1| Radical SAM [Geobacter metallireducens GS-15] Length = 250 Score = 95.5 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 64/252 (25%), Positives = 88/252 (34%), Gaps = 67/252 (26%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF------VGIQGTK 61 E+F ++QGEG G VF RF GCNL C +CDT ++ T Sbjct: 10 EVFSSVQGEGMLIGLRQVFVRFRGCNLT-----------CDYCDTPTEITAEPCLVEQTP 58 Query: 62 GGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG-- 111 G R +D++ LI+ +TGGEPLL L L + Sbjct: 59 GRRDFVPTANPVALDRIVSLIDGWQRGWPGVHHSISITGGEPLL-SHTVLSAWLPELRNI 117 Query: 112 FEIAVETNGTIEPPQG--IDWICVSPKAGCDLKIKG----------------GQELKLVF 153 + +ETNG + G ID I + G D+KI K VF Sbjct: 118 LPVYLETNGIMHSVLGLLIDHIDI---IGMDIKIPSTSGCTGLWDDHRSFLQIAARKNVF 174 Query: 154 PQVNVSPENYIGFDFER------------FSLQPMDGPFLE--ENTNLAISY----CFQN 195 ++ V E LQP+ P N A+ + C Sbjct: 175 VKIIVGDETEEWEIIRASELIAAINSHIPLILQPVTEPGGRVGINPVRALEFQEIACRHL 234 Query: 196 PKWRLSVQTHKF 207 + R+ QTHKF Sbjct: 235 DEVRIIPQTHKF 246 >gi|213422189|ref|ZP_03355255.1| hypothetical protein Salmonentericaenterica_32418 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 109 Score = 95.5 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 9/93 (9%) Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117 + K G + + L +I Q R+ V+TGGEP + +PL L K GF +E Sbjct: 19 ESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIE 74 Query: 118 TNGTIEPPQGI-DWICVSPKAGCDLKIKGGQEL 149 T+GT E W+ VSPK + ++GG ++ Sbjct: 75 TSGTHEVRCTPNTWVTVSPK----VNMRGGYDV 103 >gi|289667003|ref|ZP_06488078.1| putative radical activating enzyme [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 90 Score = 95.5 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 20/95 (21%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + I EIFL+LQGE AG VF R +GC L +C +CDT + Sbjct: 15 LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAYAFH--- 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 G + +D + + + R+ +TGG P Sbjct: 61 GGEWHEIDAIVAEVARHGV------RHVCVTGGPP 89 >gi|298491364|ref|YP_003721541.1| radical SAM domain-containing protein ['Nostoc azollae' 0708] gi|298233282|gb|ADI64418.1| Radical SAM domain protein ['Nostoc azollae' 0708] Length = 265 Score = 95.1 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 80/269 (29%), Gaps = 81/269 (30%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT---- 60 + E+F +QGEG + G +F RF C+L +C FCD+ + Sbjct: 12 RLVEVFSAIQGEGLNVGTRQIFIRFGLCDL-----------RCHFCDSAHTWDAPSLCKI 60 Query: 61 -----------KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN- 108 L +E Q + + LTGGEPLL P + Sbjct: 61 ELSPGLRDFEMHSNPIPPATLIKWVERQNLPFLHDS--ISLTGGEPLLHA--PFLAQFLP 116 Query: 109 ----KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG-GQE--------------- 148 + I +ET G + + G DLK+ E Sbjct: 117 EVRAQTNLPIYLETGGHRPDQLAM-ILPYLDSVGMDLKLPSVSGETHWTEHKEFLQICFE 175 Query: 149 ------LKLVFPQVNVSPE--------NYIGFDFERFSLQPM----------DGPFLEEN 184 +K++ Q E +G D LQP+ P Sbjct: 176 ANLDIFVKIIVSQRTDPGELERSALLVAEVGQDIP-IFLQPVTPLAESQQFSSVPVEAPA 234 Query: 185 TNLAISY--CFQNP--KWRLSVQTHKFIG 209 + + + + R+ QTHK + Sbjct: 235 PQQVLEWQALMKKFVKQVRVIPQTHKMLN 263 >gi|228996543|ref|ZP_04156182.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus mycoides Rock3-17] gi|228763175|gb|EEM12083.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus mycoides Rock3-17] Length = 220 Score = 95.1 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 22/153 (14%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + ++ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSSFTW-DGSAKEQIRQMTPEEIWSELVE 50 Query: 80 TGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P LL+ + L ++ A+ET G+ E ID I +SPK Sbjct: 51 IGGENFSHVTISGGNPVLLKNIDDFLSLLQEKQIRTAIETQGSKWQEWLLHIDEITISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169 ++K F ++ E G DF Sbjct: 111 PPSS-------QMKTDFIMLDSVIERLAGKDFS 136 >gi|228990442|ref|ZP_04150407.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus pseudomycoides DSM 12442] gi|229004193|ref|ZP_04161994.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus mycoides Rock1-4] gi|228757054|gb|EEM06298.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus mycoides Rock1-4] gi|228768968|gb|EEM17566.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE [Bacillus pseudomycoides DSM 12442] Length = 220 Score = 95.1 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 22/153 (14%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G+ +F R +GC+ C +CD+ F G+ + ++ E Sbjct: 3 VGQKTMFIRTAGCDY-----------SCAWCDSSFTW-DGSAKEQIRQMTPEEIWSELVE 50 Query: 80 TGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136 G + + ++GG P LL+ + L ++ A+ET G+ E ID I +SPK Sbjct: 51 IGGENFSHVTISGGNPVLLKNIDDFLSLLQEKQIRTAIETQGSKWQEWLLHIDEITISPK 110 Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169 ++K F ++ E G DF Sbjct: 111 PPSS-------QMKTDFIMLDSVIERLAGKDFS 136 >gi|186684456|ref|YP_001867652.1| radical SAM domain-containing protein [Nostoc punctiforme PCC 73102] gi|186466908|gb|ACC82709.1| Radical SAM domain protein [Nostoc punctiforme PCC 73102] Length = 265 Score = 94.7 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 60/268 (22%), Positives = 90/268 (33%), Gaps = 79/268 (29%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-------I 57 + E+F +QGEG + G +F RF+ C+L +C FCD+ I Sbjct: 12 RLVEVFSAIQGEGLNVGTRQIFIRFALCDL-----------RCHFCDSAHTWNAPATCRI 60 Query: 58 QGTKGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 + + G R + L + +E+Q + + LTGGEPLL L Q L + Sbjct: 61 ERSPGLRDFEIHSNPVPLPILIEWVEQQNLPCLHDS--ISLTGGEPLLHAPF-LTQFLPQ 117 Query: 110 ----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG------GQE----------- 148 G I +ET G + + G D K+ QE Sbjct: 118 VRAITGLPIYLETGGHRSEQLAM-ILPYLDSVGMDFKLPSVSGESHWQEHAKFLQLCHDS 176 Query: 149 -----LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAI-----SYCFQNP-- 196 +K++ Q N P + P FL+ T LA+ S P Sbjct: 177 YLNVFVKIIVSQ-NTDPGELERSASLVAKVSPDIPVFLQPVTPLAVSEQFSSILMLAPTP 235 Query: 197 ---------------KWRLSVQTHKFIG 209 R+ QTHK + Sbjct: 236 DQVLTWQALMKGFIKHVRVIPQTHKMLN 263 >gi|213617522|ref|ZP_03372348.1| radical SAM domain protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 59 Score = 94.3 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 11/55 (20%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58 Y I E+F TLQGEG G A+F R GC + C +CDT + Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDK 46 >gi|6066247|gb|AAF03232.1|AF156097_12 ORF12 [Pyrococcus furiosus] Length = 218 Score = 93.5 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 35/165 (21%) Query: 8 EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTK 61 EIF + QGEGG GR +F RF+GC+L +C +CD+ ++ + K Sbjct: 8 EIFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------RCTYCDSRKYIDPRSVK 56 Query: 62 GGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQA 106 R V+ + ++I+ + TGGEP LQ+ L++ Sbjct: 57 KYRVEVEPFSGKFKYFNNPVDVEEVIKWITKLDTGDIHSISYTGGEPTLQILGLASLMEK 116 Query: 107 LNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIKGGQELK 150 + G++ +ET+G + I ++ A D+K + K Sbjct: 117 AKELGYDNFLETHGGHPHLIKKIAYLT--DYASVDIKDESANATK 159 >gi|118577062|ref|YP_876805.1| organic radical activating enzyme [Cenarchaeum symbiosum A] gi|118195583|gb|ABK78501.1| organic radical activating enzyme [Cenarchaeum symbiosum A] Length = 238 Score = 93.2 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 89/252 (35%), Gaps = 59/252 (23%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M + EIF +++GEG G +F R +GC C +CDT+ + Sbjct: 1 MLNVRLYEIFTSIEGEGVLFGTKTLFVRLAGCPF-----------GCYYCDTEEA-LPAD 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN--KRGFEIAVET 118 G + +++ +I++ + TGGEPL+Q + A + G +E+ Sbjct: 49 SGEEHTMEEACRMIDDAIQPNTYK---VNFTGGEPLVQHEAVAGMARHVQSSGVPTYLES 105 Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLV-------FPQVNVSPENYIG 165 + + ID + V K ++ GQ ++V V++ E YI Sbjct: 106 S-CYDADRFRTVIPHIDIVKVEFKTADSAFVEEGQHPRIVRSATECLRAAVDLGRETYIK 164 Query: 166 F-------------------------DFERFSLQPMDGPFLEENTNLAISYCFQNP---K 197 D F +QP+ GP L + P K Sbjct: 165 VVAGEGTKPGPFAELVGGIFSEVSNDDISGFVIQPVTGPGAPTLDALLELHDIVRPYSNK 224 Query: 198 WRLSVQTHKFIG 209 R+ Q HK IG Sbjct: 225 VRVIPQLHKAIG 236 >gi|319789546|ref|YP_004151179.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1] gi|317114048|gb|ADU96538.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1] Length = 219 Score = 92.4 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 87/245 (35%), Gaps = 62/245 (25%) Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 + +I E F+++QGEG G A F R C S CRFCDT + + Sbjct: 1 MITICETFVSVQGEGLTVGTPAFFIRTGKC-----------SVGCRFCDTKYSW---SSR 46 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGG-EPLLQVDVPLIQALNKRG--FEIAVETN 119 R +V++L E + ++TGG + L+ AL + ++ VET Sbjct: 47 ERKSVEELVAEAERAG------FQTVIVTGGEPLEEEELPHLLTALKRAKPVKQVIVETC 100 Query: 120 GT---IEPPQGIDWICVSPKAG------------CDLKIKGGQELKLV------FPQVNV 158 G + P+ + + +SPK LK ELK ++ Sbjct: 101 GHTFRDDLPRNVRLV-LSPKPPSMGVPFPFESVKAFLKHYREVELKFTLFNGEDLKRIKE 159 Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYC------------FQNPKWRLSVQTHK 206 E G QP++ P + C + +R+ Q HK Sbjct: 160 FIEESEGLLPSPVVFQPLETPLEDYG-----KTCKRVAQMLLSDGELRKLPFRVIPQVHK 214 Query: 207 FIGIR 211 IG++ Sbjct: 215 LIGLK 219 >gi|159905256|ref|YP_001548918.1| radical SAM domain-containing protein [Methanococcus maripaludis C6] gi|159886749|gb|ABX01686.1| Radical SAM domain protein [Methanococcus maripaludis C6] Length = 242 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 88/250 (35%), Gaps = 57/250 (22%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD-------TDFVGIQ 58 I+E+F ++ GEG G+ +F RF C L C +CD T V Sbjct: 2 IREVFSSIMGEGKFIGKRFIFVRFKECPL-----------DCIYCDEPNAPGGTARVEEI 50 Query: 59 GTKGGRYNVDQLA-DLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIA 115 G +L +LIE + TGGEPLL + + L ++G++ Sbjct: 51 SGSGEFTEYLELDHELIETIEKLRTPDLFAVSFTGGEPLLYSNKIKKYSEILKQKGYKTF 110 Query: 116 VETNGTIE-PPQGIDWICVSPKAG-----------CDLKIKGGQELK------------- 150 +E+NG G D+ + K DL K + ++ Sbjct: 111 LESNGMFPEKLDGYDYASIDIKLPEHFENKDDDFWYDLYTKELETIERLYLAGTDVYAKI 170 Query: 151 LVFPQVNVSPENYIGFDFERF-----SLQPMDGPFLEENTN------LAISYCFQNPKWR 199 +VF + + I D + +QP+ + T ++ C + Sbjct: 171 VVFEETSEELIERIARDLSKIGNITLCIQPVSPTDRIKATTSKKKIFELMAICGRYVDVM 230 Query: 200 LSVQTHKFIG 209 + Q HK++G Sbjct: 231 CTPQIHKWMG 240 >gi|213422146|ref|ZP_03355212.1| hypothetical protein Salmonentericaenterica_32183 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 43 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 11/52 (21%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV 55 Y I E+F TLQGEG G A+F R GC + C +CDT Sbjct: 3 YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHT 43 >gi|34419518|ref|NP_899531.1| conserved hypothetical protein [Vibrio phage KVP40] gi|34333199|gb|AAQ64354.1| conserved hypothetical protein [Vibrio phage KVP40] Length = 293 Score = 89.7 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 34/156 (21%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-------------------- 46 E+F ++QGEG + G+ ++F RF GCNL Sbjct: 6 TEMFYSIQGEGKYTGQASLFFRFWGCNLECHGFGQEDPTNKDTWVLDFKDYDPKANNVTS 65 Query: 47 -------CRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 R CD+ + + + V + + + E+ + V+TGGEP++ Sbjct: 66 VEDLPVWTRGCDSSYTWAKKYAHLASKSEVADVCEAMLEKLPNRVWGDIHWVITGGEPMM 125 Query: 98 --QVDVPLIQALNKRG---FEIAVETNGTIEPPQGI 128 + ++ K + +ETNGT E Sbjct: 126 NQAQIIEMMNYFIKIDNYPKHVTIETNGTRELKPEF 161 >gi|150402999|ref|YP_001330293.1| radical SAM domain-containing protein [Methanococcus maripaludis C7] gi|150034029|gb|ABR66142.1| Radical SAM domain protein [Methanococcus maripaludis C7] Length = 242 Score = 89.7 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 53/255 (20%), Positives = 87/255 (34%), Gaps = 67/255 (26%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD-------TDFVGIQ 58 I+E+F ++ GEG G+ +F RF C L C +CD T V Sbjct: 2 IREVFSSIMGEGKFIGKRFIFVRFKECPL-----------DCIYCDEPNTPGGTARVEEV 50 Query: 59 GTKGGRYNVDQLA-DLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIA 115 G +L +LIE + TGGEPLL + + L +G++ Sbjct: 51 SGSGDFTEYLELENELIEIIEKLRTPDLFAVSFTGGEPLLYPNKIKQYSEILKHKGYKTF 110 Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK------------------------- 150 +E+NG P+ +D A D+K+ E K Sbjct: 111 LESNG--MFPERLDSY---DYASIDIKLPEHFENKDDDFWYNLYSKELETIERLYLAGTD 165 Query: 151 -----LVFPQVNVSPENYIGFDFERF-----SLQPMDGPFLEENTN------LAISYCFQ 194 +VF + + I D + +QP+ + T ++ C + Sbjct: 166 VYAKIVVFEETSEELIERIARDLSKIGNITLCIQPVSPTDRIKATTSKKKIFELMAICGR 225 Query: 195 NPKWRLSVQTHKFIG 209 + Q HK++G Sbjct: 226 YVDVMCTPQIHKWMG 240 >gi|114776301|ref|ZP_01451346.1| radical activating enzyme family protein [Mariprofundus ferrooxydans PV-1] gi|114553131|gb|EAU55529.1| radical activating enzyme family protein [Mariprofundus ferrooxydans PV-1] Length = 196 Score = 88.5 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 70/212 (33%), Gaps = 49/212 (23%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 F R +GC L +C +CDT I G +D + ++ Sbjct: 1 MACTFIRLAGCPL-----------RCTYCDTPQA-IPFDSGEWMQIDDIVTDVQ------ 42 Query: 82 EKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140 ++ ++TGGEPL Q L+ L G E+ +ET+G + V + D Sbjct: 43 KRNRPLVLVTGGEPLAQRHCSELLSELLALGCEVQLETSGAYPLAS----LPVGVRRIVD 98 Query: 141 LKIKG-----------------GQELKLVFP-------QVNVSPENYIGFDFERFSLQPM 176 LK G G E+K+V + ++ +G L Sbjct: 99 LKTPGSGEAERNRLDNLSCLCAGDEIKMVLTSRADYQWAAAMIEQHRLGQGDVPVLLSAA 158 Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 G E L RL +Q HK I Sbjct: 159 WGSLKAE--ELCQWMLDDRLPARLQLQLHKVI 188 >gi|134046626|ref|YP_001098111.1| radical SAM domain-containing protein [Methanococcus maripaludis C5] gi|132664251|gb|ABO35897.1| Radical SAM domain protein [Methanococcus maripaludis C5] Length = 242 Score = 88.5 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 87/255 (34%), Gaps = 67/255 (26%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD-------TDFVGIQ 58 I+E+F ++ GEG G+ +F RF C L C +CD T V Sbjct: 2 IREVFSSIMGEGKFIGKRFIFVRFKECPL-----------DCIYCDEPNAPGGTARVEEV 50 Query: 59 GTKGGRYNVDQLA-DLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIA 115 G +L +LI+ + TGGEPLL + + L +G++ Sbjct: 51 SGSGDFMEYLELEHELIDIIEKLRTPDLFAVSFTGGEPLLYSNKIKQYSEILKHKGYKTF 110 Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK------------------------- 150 +E+NG P+ +D A D+K+ E K Sbjct: 111 LESNG--MFPERLDSY---DYASIDIKLPEHFENKEDEFWYDLYSKELETIERLYLAGTD 165 Query: 151 -----LVFPQVNVSPENYIGFDFERF-----SLQPMDGPFLEENTN------LAISYCFQ 194 +VF + + I D + +QP+ + T ++ C + Sbjct: 166 VYAKIVVFEETSEELIERIARDLSKIGNITLCIQPVSPTDKIKATTSKKKLFELMAICGR 225 Query: 195 NPKWRLSVQTHKFIG 209 + Q HK++G Sbjct: 226 YVDVMCTPQIHKWMG 240 >gi|119513185|ref|ZP_01632233.1| hypothetical protein N9414_13008 [Nodularia spumigena CCY9414] gi|119462172|gb|EAW43161.1| hypothetical protein N9414_13008 [Nodularia spumigena CCY9414] Length = 265 Score = 86.6 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 59/271 (21%), Positives = 92/271 (33%), Gaps = 85/271 (31%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-------I 57 + E+F +QGEG + G +F RF+ C+L +C FCD+ I Sbjct: 12 RLIEVFSAIQGEGLNVGTRQLFIRFALCDL-----------RCHFCDSAHTWNAPATCRI 60 Query: 58 QGTKGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 + T G R ++ L +E Q + + LTGGEPLL ++ Sbjct: 61 ELTPGLRDFEIHSNPVSLPILIQWVERQNLPCLHDS--ISLTGGEPLLHA--AFLKEFLP 116 Query: 110 R-----GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK--GGQELKL----------- 151 + I +E +G P Q + G DLK+ G+ L Sbjct: 117 QVRSLTNLPIYLE-SGGHRPEQLAMVLPYLDSVGMDLKLPSVSGESLWTEHTNFLQLCFN 175 Query: 152 ----VFPQVNVSPENYIGFDFER-------------FSLQPMDGPFLEENTNLAISYCFQ 194 VF ++ +S N + ER LQP+ L + L + Sbjct: 176 THLEVFVKIIISD-NTDPAELERSAAMVADVSPDIPIFLQPV--TPLAASEQLTETPVLA 232 Query: 195 N----------------PKWRLSVQTHKFIG 209 P+ R+ QTHK + Sbjct: 233 PAPEKVLMWQALMKQFVPQVRVIPQTHKMLN 263 >gi|57168667|ref|ZP_00367799.1| radical SAM domain protein, putative [Campylobacter coli RM2228] gi|57019948|gb|EAL56628.1| radical SAM domain protein, putative [Campylobacter coli RM2228] Length = 224 Score = 86.6 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 64/160 (40%), Gaps = 17/160 (10%) Query: 27 CRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 RF+GCN G + + + CDT Y + ++L + + Sbjct: 1 MRFAGCNFNCSGFGVKLIKNGKTLKGCDTIRAVFTKEFNEEYEILNASELFKRVLDLKKD 60 Query: 84 EGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNGTIE------PPQGIDWICV 133 V+TGGEPL+ + P IQAL K FE+ E+NG+IE P + Sbjct: 61 FNPIVVITGGEPLIHHENPEFIDFIQALLKNNFEVHFESNGSIELDFEKYPFYKECVFAL 120 Query: 134 SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173 S K G+E +L F + ++Y F +F L Sbjct: 121 SVKLQNSGM---GKEKRLNFNALK-GFKHYAKDSFYKFVL 156 >gi|150399835|ref|YP_001323602.1| radical SAM domain-containing protein [Methanococcus vannielii SB] gi|150012538|gb|ABR54990.1| Radical SAM domain protein [Methanococcus vannielii SB] Length = 242 Score = 85.8 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 89/255 (34%), Gaps = 67/255 (26%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I+E+F ++ GEG G+ +F RF C L C +CD T G Sbjct: 2 IREVFSSIMGEGKFIGKRFIFVRFKQCPL-----------DCIYCD-----EPNTPEGMA 45 Query: 66 NVDQLA-------------DLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKR 110 V+++ +LI+ + TGGEPLL Q + L+ + Sbjct: 46 RVEEIPGSGLFTEYLDIDNELIQIIENLRTPDLFAVSFTGGEPLLYSQKIKEYSKILHDK 105 Query: 111 GFEIAVETNGTIE-PPQGIDWICVSPKAGCDLK---IKGGQEL----------------- 149 G++ +E+NG D+ + K K ++ EL Sbjct: 106 GYKTFLESNGMFPEKLSSYDYASIDIKLPEHFKDCDMEFWHELYRKELETIERLYYAKCN 165 Query: 150 ----KLVFPQVNVSPENYIGFDFERF-----SLQP------MDGPFLEENTNLAISYCFQ 194 +VF + +V I D + S+QP + ++ ++ C + Sbjct: 166 VYAKIVVFEETSVELLEQIARDLSKIGDITLSIQPVTPTGDIIKTVSKKKIFEIMAICGR 225 Query: 195 NPKWRLSVQTHKFIG 209 + Q HK++G Sbjct: 226 YVDVICTPQIHKWMG 240 >gi|167043382|gb|ABZ08085.1| putative Radical SAM superfamily protein [uncultured marine crenarchaeote HF4000_ANIW141O9] Length = 237 Score = 85.5 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 18/120 (15%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK I EIF +++GEG G +F R +GC C +CDT + Sbjct: 1 MKT-RIFEIFTSIEGEGILYGTKTLFVRLAGCPY-----------SCFYCDTLDA-LPLD 47 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G Y++ + +LI+ + TGGEPL+Q + L + + RG +E+ Sbjct: 48 SGKEYSITEACNLIDTSLQDNTYK---VNFTGGEPLIQYEAVYELAKHVKARGLPTYLES 104 >gi|254361906|ref|ZP_04978039.1| hypothetical protein MHA_1513 [Mannheimia haemolytica PHL213] gi|153093447|gb|EDN74435.1| hypothetical protein MHA_1513 [Mannheimia haemolytica PHL213] Length = 55 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 11/57 (19%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + I EIF +LQGEG + G A+F RF CNL C +CDT++ + Sbjct: 10 FPIVEIFESLQGEGFNTGMPAIFVRFGKCNLT-----------CPWCDTNYNQFEQW 55 >gi|205356588|ref|ZP_03223351.1| hypothetical protein Cj8421_0161 [Campylobacter jejuni subsp. jejuni CG8421] gi|205345593|gb|EDZ32233.1| hypothetical protein Cj8421_0161 [Campylobacter jejuni subsp. jejuni CG8421] Length = 224 Score = 83.5 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 69/176 (39%), Gaps = 19/176 (10%) Query: 27 CRFSGCNLWSGREQDRLSAQCR---FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 RF+GCN ++S + CDT Y +L++ + Sbjct: 1 MRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKLKQD 60 Query: 84 EGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNGTIE------PPQGIDWICV 133 V+TGGEPL+ + P IQ L K FEI E+NG+IE P + Sbjct: 61 FDPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFESNGSIEIDFDRYPFYKECIFAL 120 Query: 134 SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP--MDGPFLEENTNL 187 S K G ++ K + + + +NY F +F L +D FLE N L Sbjct: 121 SVKLQNS----GIKKDKRLNFKALKAFKNYAKDSFYKFVLDANTLDNSFLEINEIL 172 >gi|330721755|gb|EGG99747.1| Queuosine Biosynthesis QueE Radical SAM [gamma proteobacterium IMCC2047] Length = 164 Score = 82.4 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 37/169 (21%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 ++D + ++ + R+ +TGGEPL Q + L+ L R +++++ET+G + Sbjct: 1 MSLDAILGEVD------KYASRHVTVTGGEPLAQPKVLKLLAELCDRDYQVSLETSGAVT 54 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQE-----------------LKLVFPQVNVSPENYIGF 166 +G+D V DLK QE +K V + ++ Sbjct: 55 L-EGVDQRVV---KVMDLKTPASQECHRNLYENIDLLNTHDQVKFVIC--DRQDYDWAKM 108 Query: 167 DFERFSL-----QPMDGPFLEENT--NLAISYCFQNPKWRLSVQTHKFI 208 +++SL + + P E T LA + R +Q HK++ Sbjct: 109 QIDQYSLTERVDEVLFSPSHGELTGAQLAEWILDDGLQVRFQLQLHKYL 157 >gi|294337988|emb|CBJ93826.1| hypothetical phage protein [Campylobacter phage CP220] gi|294338182|emb|CBJ94219.1| hypothetical phage protein [Campylobacter phage CPt10] Length = 264 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 76/228 (33%), Gaps = 45/228 (19%) Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGRE----QDRLSAQCRFCDTDFVGIQGTKGGRY-- 65 T+QGEG + AVF R +GCN + CDT K Sbjct: 19 TIQGEGPRL-KSAVFVRVAGCNNTCKGFGCSAVAPDGSAVTGCDTIRAVSPKFKSQWKYF 77 Query: 66 ----NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK----RGFEIAVE 117 ++ + D + + K + +LTGGEPLL + +IQ R +I +E Sbjct: 78 DNFKDLTSIIDPLVAFKNSEIKHTKDIILTGGEPLLYWNTNVIQDFLAYYISRKHQITIE 137 Query: 118 TNGTIEPPQGIDW-----ICVSPKAGCD-------LKIKGGQE---------LKLVF--- 153 TN +++ ++ +S K C + IK + LK V Sbjct: 138 TNASLDIEFFKEYQKEIMFSMSVKLSCSGEPKKKRINIKTISKILENCPKSYLKFVVNPE 197 Query: 154 ----PQVNVSPENYIGFDFERFSLQPM--DGPFLEENTNLAISYCFQN 195 + Y + L PM +NT C ++ Sbjct: 198 TWDTDYAEIKEILYDLPIYTEVYLMPMGETRELQIKNTPFVFEKCAEH 245 >gi|297619956|ref|YP_003708061.1| Radical SAM domain protein [Methanococcus voltae A3] gi|297378933|gb|ADI37088.1| Radical SAM domain protein [Methanococcus voltae A3] Length = 247 Score = 78.9 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 82/257 (31%), Gaps = 66/257 (25%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I+E+F ++ GEG + G+ +F RF C L C +CD K Sbjct: 2 IREVFSSIMGEGKYIGKRFIFVRFKKCPL-----------NCIYCDEPNTAEGIPKVEYI 50 Query: 66 NVDQLAD--------LIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA--LNKRGFEIA 115 + + LIE + TGGEPL+ A L ++G++ Sbjct: 51 SGSDVIKEVPDLQNCLIETIDELKTPDLFAISFTGGEPLVYSKYIETYAPKLREKGYKTF 110 Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKG---------------GQELKL--------- 151 +E+NG P+ + A D+K+ +ELK Sbjct: 111 LESNG--MFPEAVKDAKYYDYASIDIKLPEHFDNVNKVIEWEDLYKKELKTIENLYKNGT 168 Query: 152 -----VFPQVNVSPENYIGFDFE-------RFSLQPMDG-------PFLEENTNLAISYC 192 V N S E + +QP+ P ++ + C Sbjct: 169 EVYAKVVIFENTSNELIEKIAKDISNIGNITLCIQPITPIKGLDIKPPAQKKIFKIMELC 228 Query: 193 FQNPKWRLSVQTHKFIG 209 + + Q HK++ Sbjct: 229 GKYTDVMFTPQIHKWMN 245 >gi|218457967|ref|ZP_03498058.1| organic-radical-activating protein [Rhizobium etli Kim 5] Length = 184 Score = 78.1 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 56/174 (32%), Gaps = 36/174 (20%) Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE--PP 125 + +E L+GG P +Q PLI+ + +G+ A+ET G++ Sbjct: 1 MSAEAIWQEVTKLSGGRPMTVSLSGGNPAIQPLGPLIELGHSQGYRFALETQGSVARNWF 60 Query: 126 QGIDWICVSPKAGCDLKIKGGQEL----------------KLVFPQVNVSPENYIGFDFE 169 + +D + +SPK EL +VF + + +G + Sbjct: 61 RDLDVLVLSPKPPSSGMSTNWGELGNCLRLTAGGPEIALKIVVFDDADYAFARQVGERYP 120 Query: 170 RF--SLQPMDGPFLEENTNLA---ISYCFQNPKW-------------RLSVQTH 205 LQP + + + A I W R+ Q H Sbjct: 121 YIPLYLQPGNHTPPPPDDDDARIDIDGVMDRMHWLVEKVTVDGWFAPRVLPQLH 174 >gi|161527549|ref|YP_001581375.1| radical SAM domain-containing protein [Nitrosopumilus maritimus SCM1] gi|160338850|gb|ABX11937.1| Radical SAM domain protein [Nitrosopumilus maritimus SCM1] Length = 237 Score = 78.1 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 84/245 (34%), Gaps = 59/245 (24%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 EIF +++GEG G +F R +GC C +CDT + G Y++ Sbjct: 7 EIFTSVEGEGILYGTKTLFVRLAGCPFT-----------CFYCDTK-ESLPLDSGTEYSI 54 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125 + LI+ + TGG+PL+Q L + + ++ +E++ + Sbjct: 55 EDANQLIDSNLKNQTYK---VNFTGGDPLIQHQAVALLAKHIQEKKIPTYLESS-CFDID 110 Query: 126 ------QGIDWI------------------------------CVSPKAGCDLKIKGGQEL 149 ID + VS K +K+ + Sbjct: 111 RFNHVLPFIDIVKIEFKTKDSDFVDSQHYEKLIGHTMKCLESSVSAKKITYIKVVVSSKT 170 Query: 150 K-LVFPQ-VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW---RLSVQT 204 K F Q VN + D + F +QP G L Y P + ++ Q Sbjct: 171 KPDDFTQLVNQIFDIVSKDDIDGFIIQPTYGVAEPSLDLLLSLYDIVFPHYNEVKVVPQL 230 Query: 205 HKFIG 209 HKFIG Sbjct: 231 HKFIG 235 >gi|284122655|ref|ZP_06386869.1| radical SAM domain protein [Candidatus Poribacteria sp. WGA-A3] gi|283829337|gb|EFC33735.1| radical SAM domain protein [Candidatus Poribacteria sp. WGA-A3] Length = 164 Score = 77.8 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 62/172 (36%), Gaps = 44/172 (25%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123 +++ + D ++ +TGGEPL Q LI L + FE+ +ET+G Sbjct: 1 MSLEAVVDQVK------GYGCSLVEVTGGEPLAQPAAFELITRLCEERFEVLIETSGA-- 52 Query: 124 PPQGIDWICVSPKAGCDL-------------------KIKGGQELKLVFPQVNVSPENYI 164 ID V P+A L I+ ++K V + ++ Sbjct: 53 ----IDVAPVDPRASIILDVKCPGSEMDDRMRWENLQAIRQKDQVKFVI--GDRCDYDWA 106 Query: 165 GFDFERFSL--------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208 +R+ L P+ G +E LA RL VQ HKFI Sbjct: 107 VEVVKRYRLTEKCPVLFSPVFG--AQELQPLAEWLLQDRLPVRLQVQLHKFI 156 >gi|45357640|ref|NP_987197.1| radical SAM domain-containing protein [Methanococcus maripaludis S2] gi|45047200|emb|CAF29633.1| conserved hypothetical protein [Methanococcus maripaludis S2] Length = 242 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 61/161 (37%), Gaps = 38/161 (23%) Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 I+E+F ++ GEG G+ +F RF C L C +CD GG Sbjct: 2 IREVFSSIMGEGKFIGKRFIFVRFKECPL-----------DCIYCD-----EPNAPGGTA 45 Query: 66 NVDQLA---DLIE----------EQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKR 110 V++++ + +E + TGGEPL+ + + L + Sbjct: 46 RVEEISGSCEFMEYLEIEHELIEIIEKLRTPDLFAVSFTGGEPLVYSNKIKEYSEILKHK 105 Query: 111 GFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIKGGQELK 150 G++ +E+NG D+ A D+K+ E K Sbjct: 106 GYKTFLESNGMFPERLGSYDY------ASIDIKLPEHFENK 140 >gi|329766234|ref|ZP_08257792.1| radical SAM domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137293|gb|EGG41571.1| radical SAM domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 237 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 17/114 (14%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 EIF +++GEG G +F R +GC C +CDT + G Y++ Sbjct: 7 EIFTSVEGEGILYGTKTLFVRLAGCPFT-----------CFYCDTK-ESLPLDSGQEYSI 54 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 ++ LI+ + TGG+PL+Q + L + + + +E++ Sbjct: 55 EEACTLIDSNLKNQTYK---VNFTGGDPLIQHEAVAELAKHIQTKKIPTYLESS 105 >gi|213418906|ref|ZP_03351972.1| hypothetical protein Salmonentericaenterica_14054 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 76 Score = 75.1 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 9/75 (12%) Query: 142 KIKGGQELKL------VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 ++ E+K ++ +LQP+ E+ T L I C Sbjct: 4 ALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR 61 Query: 196 PKWRLSVQTHKFIGI 210 WRLS+QTHK++ I Sbjct: 62 -NWRLSMQTHKYLNI 75 >gi|257459146|ref|ZP_05624265.1| radical SAM domain protein [Campylobacter gracilis RM3268] gi|257443531|gb|EEV18655.1| radical SAM domain protein [Campylobacter gracilis RM3268] Length = 321 Score = 74.3 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 7/78 (8%) Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSG-----REQDRLSAQCRFCDTDFVGI-- 57 + E FL++QGEG +AGR+A F RF+GCNL R + R CDT Sbjct: 2 RLVESFLSIQGEGKYAGRLAFFFRFAGCNLRCAGFGGERVSPKTGEILRGCDTIRAVFTN 61 Query: 58 QGTKGGRYNVDQLADLIE 75 N+ QL + I Sbjct: 62 HFEHEEILNLAQLLNKIS 79 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 47/152 (30%), Gaps = 31/152 (20%) Query: 75 EEQWITGEKEGRYCVLTGGEPLLQVDVPL----IQALNKRGFEIAVETNGTI------EP 124 + ++TGGEP+L L I L RG+E+ ETNGTI P Sbjct: 151 ASPQSAKLHQKPIIIITGGEPMLHHKEALFYEFICELLARGYEVHFETNGTILVDFEKFP 210 Query: 125 PQGIDWICVSPKAGCD---------------LKIKGGQEL-KLVF-PQVNVSPENYIGFD 167 VSPK LK K V P+ + PE Sbjct: 211 AYKSSVFAVSPKLSNSAEPRERRLNFAALRNLKQNAKDSFYKFVISPEFDAQPEIREILA 270 Query: 168 F--ERFSLQP--MDGPFLEENTNLAISYCFQN 195 P D LE + +C +N Sbjct: 271 ACESEVYCMPRGADRRELESGAQFCVDFCLKN 302 >gi|213585771|ref|ZP_03367597.1| hypothetical protein SentesTyph_32677 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 58 Score = 71.2 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Query: 169 ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ E+ T L I C WRLS+QTHK++ I Sbjct: 19 RVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 57 >gi|313158374|gb|EFR57773.1| pyruvate formate-lyase 1-activating enzyme [Alistipes sp. HGB5] Length = 241 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 26/118 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GCN +C +C DT I G + D++ Sbjct: 11 GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IDACGGTPTSPDEI 53 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQ 126 + +Q + G +GGEP Q PL++ L + G + ++TNG+I P Sbjct: 54 LRMAVDQKPFYGRRGG-VTFSGGEPTFQAAALAPLVRRLREAGIHVCIDTNGSIWNPA 110 >gi|257052674|ref|YP_003130507.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Halorhabdus utahensis DSM 12940] gi|256691437|gb|ACV11774.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Halorhabdus utahensis DSM 12940] Length = 228 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 36/139 (25%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIE 75 AVF +GCNL +C +C D+ G + D+ L++ Sbjct: 21 AVF--TAGCNL-----------RCPYCHNPELIEADSKHAG-----ASTLSADEFFALLD 62 Query: 76 EQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPP--QGIDWIC 132 ++ + V+TGGEP L D+P + + RGF++ ++TNGT + +D Sbjct: 63 DREAVLDG----VVITGGEPTLHRDLPRFVSRIADRGFDVKLDTNGTRPAVLRETLDTGA 118 Query: 133 VSPKAGCDLKIK--GGQEL 149 V DLK EL Sbjct: 119 VE-YVAMDLKTTPDRYDEL 136 >gi|325297399|ref|YP_004257316.1| pyruvate formate-lyase activating enzyme [Bacteroides salanitronis DSM 18170] gi|324316952|gb|ADY34843.1| pyruvate formate-lyase activating enzyme [Bacteroides salanitronis DSM 18170] Length = 242 Score = 68.5 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 32/182 (17%) Query: 3 LYSIKEIFLTLQGEGGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVG 56 + + + +L G + G R+ VF GCN +C +C DT + Sbjct: 1 MIRVH-SYESL---GTYDGPGIRLVVF--LQGCNF-----------RCLYCANPDT--ID 41 Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEI 114 +G D L + ++ G+K G +GGEP +Q +PL + L + G I Sbjct: 42 CKGEGKNTAPEDILRMAVSQKPFFGKKGG--ITFSGGEPTIQAKALIPLFRMLKEAGIHI 99 Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKI---KGGQELKLVFPQVNVSPENYIGFDFERF 171 V+TNG++ D ++ D+K + L L + + ++ + + F Sbjct: 100 CVDTNGSVWNESVKDLFTLADLVLLDVKEFNDERHHLLTLRSNEQTLQTAAWLEANEKPF 159 Query: 172 SL 173 L Sbjct: 160 WL 161 >gi|218778532|ref|YP_002429850.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01] gi|218759916|gb|ACL02382.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01] Length = 236 Score = 68.1 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 15/110 (13%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 V + CNL +C +C+ + + + ++L D + + Sbjct: 23 PCVNVYLAFCNL-----------RCPWCNAAELVVGPQTKETISPEELFDEL-QTIKNKH 70 Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI 131 E + TGGEP + +P L++ + G E VETNGT P +D++ Sbjct: 71 PELKAVCFTGGEPTMHRGLPDLLRRVCDMGLETCVETNGT--QPHLLDYV 118 >gi|320540673|ref|ZP_08040308.1| putative conserved protein [Serratia symbiotica str. Tucson] gi|320029264|gb|EFW11308.1| putative conserved protein [Serratia symbiotica str. Tucson] Length = 54 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 ++ +LQP+ E+ T L I+ C WRLS+QTHK++ I Sbjct: 2 LDALLATLHDKKPRIIALQPISKK--EDATRLCITTCIAR-NWRLSMQTHKYLNI 53 >gi|289450755|ref|YP_003475206.1| pyruvate formate-lyase 1-activating enzyme [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185302|gb|ADC91727.1| pyruvate formate-lyase 1-activating enzyme [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 503 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 22/105 (20%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77 G +F GC L +C FC DT T G +++ + Sbjct: 22 GVRTIFF-LQGCPL-----------RCSFCHNPDTQAT----TGGTLMTPEEVLAKAKRY 65 Query: 78 WITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 ++G +GGEPLLQ ++ L+ GF ++T+G Sbjct: 66 RPYHREDGG-VTFSGGEPLLQGEFLAATLKLLHDNGFNTCLDTSG 109 >gi|189025041|ref|YP_001935809.1| Proline-rich extensin [Brucella abortus S19] gi|189020613|gb|ACD73335.1| Proline-rich extensin [Brucella abortus S19] Length = 184 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 2/101 (1%) Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI--EPP 125 + + E +K L+GG P +Q LI+ G+ A+ET G++ + Sbjct: 1 MSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVAKDWF 60 Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 +D + +SPK L P + F Sbjct: 61 SRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 101 >gi|169825191|ref|YP_001692802.1| pyruvate-formate-lyase-activating enzyme [Finegoldia magna ATCC 29328] gi|167831996|dbj|BAG08912.1| pyruvate-formate-lyase-activating enzyme [Finegoldia magna ATCC 29328] Length = 501 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 28/128 (21%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77 G +F GC L +C +C D+ + G Y VD++ + Sbjct: 22 GNRTIFF-LQGCPL-----------KCVYCHNPDSQNIH----GGKEYTVDEIIKIARRY 65 Query: 78 WITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGT------IEPPQGID 129 +EG ++GGEPLLQ + L++ L + GF ++T+G E ID Sbjct: 66 KPYHGQEGG-VTISGGEPLLQGEFLKELVKRLKQEGFNTCLDTSGVGDKKYYSEILPYID 124 Query: 130 WICVSPKA 137 I + KA Sbjct: 125 TILLDFKA 132 >gi|325290498|ref|YP_004266679.1| pyruvate formate-lyase activating enzyme [Syntrophobotulus glycolicus DSM 8271] gi|324965899|gb|ADY56678.1| pyruvate formate-lyase activating enzyme [Syntrophobotulus glycolicus DSM 8271] Length = 248 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 24/118 (20%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66 E F TL G G R VF GC L +C++C + N Sbjct: 8 VESFSTLDGPGI---RSVVF--LQGCPL-----------RCQYC----HNPDTWQMNEGN 47 Query: 67 VDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 + A++I R ++GGEP Q+D L++ + G AV+T+G Sbjct: 48 LVDSAEVIARVLKNKNYIARNGGVTISGGEPTAQIDFLAELLKGFKEAGLHTAVDTSG 105 >gi|225568673|ref|ZP_03777698.1| hypothetical protein CLOHYLEM_04751 [Clostridium hylemonae DSM 15053] gi|225162515|gb|EEG75134.1| hypothetical protein CLOHYLEM_04751 [Clostridium hylemonae DSM 15053] Length = 226 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 24/101 (23%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC L +C +C DT + G ++ ++A I Sbjct: 13 VFM--QGCPL-----------RCAYCHNPDT----WKFEAGEEFSPQEVAGKIRRYRPYL 55 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +TGGEPL+Q + L + L + GF A++T+G Sbjct: 56 TNGG--VTVTGGEPLMQPEFTAELFRILKEEGFHTALDTSG 94 >gi|302380412|ref|ZP_07268880.1| pyruvate formate-lyase 1-activating enzyme [Finegoldia magna ACS-171-V-Col3] gi|302311723|gb|EFK93736.1| pyruvate formate-lyase 1-activating enzyme [Finegoldia magna ACS-171-V-Col3] Length = 501 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 22/105 (20%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77 G +F GC L +C +C D+ + G Y VD++ + + Sbjct: 22 GNRTIFF-LQGCPL-----------KCVYCHNPDSQNIH----GGKEYTVDEIIKIAKRY 65 Query: 78 WITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +EG ++GGEPLLQ + L++ L + GF ++T+G Sbjct: 66 KPYHGQEGG-VTISGGEPLLQGEFLKELVKRLKQEGFNTCLDTSG 109 >gi|303234602|ref|ZP_07321236.1| pyruvate formate-lyase 1-activating enzyme [Finegoldia magna BVS033A4] gi|302494265|gb|EFL54037.1| pyruvate formate-lyase 1-activating enzyme [Finegoldia magna BVS033A4] Length = 501 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 22/105 (20%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77 G +F GC L +C +C D+ + G Y VD++ + + Sbjct: 22 GNRTIFF-LQGCPL-----------KCVYCHNPDSQNIH----GGKEYTVDEIIKIAKRY 65 Query: 78 WITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +EG ++GGEPLLQ + L++ L + GF ++T+G Sbjct: 66 KPYHGQEGG-VTISGGEPLLQGEFLKELVKRLKQEGFNTCLDTSG 109 >gi|227494256|ref|ZP_03924572.1| [formate-C-acetyltransferase]-activating enzyme [Actinomyces coleocanis DSM 15436] gi|226831990|gb|EEH64373.1| [formate-C-acetyltransferase]-activating enzyme [Actinomyces coleocanis DSM 15436] Length = 296 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 26/128 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 +GC L +C +C DT ++ G D+L +E + Sbjct: 80 LAGCPL-----------RCLYCHNPDT----MKMRDGTAVYADELIKRMERYAPVFKASN 124 Query: 86 RYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG------TIEPPQGIDWICVSPKA 137 +GGEPL+Q + L++A +RG A++T+G + E + +D + + K+ Sbjct: 125 GGVTFSGGEPLMQPAFLLKLLKAAKERGIHTAIDTSGFLGAHASDELLENVDLVLLDVKS 184 Query: 138 GCDLKIKG 145 G + Sbjct: 185 GLPDVYEK 192 >gi|168335509|ref|ZP_02693590.1| pyruvate formate-lyase activating enzyme [Epulopiscium sp. 'N.t. morphotype B'] Length = 243 Score = 65.4 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 35/174 (20%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC L +C++C DT +G+ G + D L I + Sbjct: 23 IF--TQGCPL-----------RCQYCHNPDT----WKGSDGEEMDSDALVKEILKYKAYM 65 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139 ++ ++GGEPLLQ + + + + K+G ++T+G I + D + + Sbjct: 66 DRSNGGITISGGEPLLQREFVTDIFKKVKKKGIHTCIDTSGFIPLDKIGDILDYTDLVLL 125 Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 D+K K V V+ E + F ++ N + I Y Sbjct: 126 DIKSYNPAIYKKV---TGVALEPTLKFA----------QELMKRNIPVWIRYVL 166 >gi|327400235|ref|YP_004341074.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Archaeoglobus veneficus SNP6] gi|327315743|gb|AEA46359.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Archaeoglobus veneficus SNP6] Length = 232 Score = 65.4 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 26/122 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +F SGC +C FC G + +V L I E ++ Sbjct: 22 IF--LSGCPF-----------RCPFC---HNHELLAGGTKTDVSGLIGKISENYLIDG-- 63 Query: 85 GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG--TIEPPQGIDWICVSPKAGCDLK 142 +TGGEPL+Q L + L GF + ++TNG T E + +D++ DLK Sbjct: 64 ---VCITGGEPLMQNIEDLCKKLKDAGFAVKIDTNGYYTEELGKILDYV---DYVAIDLK 117 Query: 143 IK 144 Sbjct: 118 TT 119 >gi|330836098|ref|YP_004410739.1| glycyl-radical enzyme activating protein family [Spirochaeta coccoides DSM 17374] gi|329748001|gb|AEC01357.1| glycyl-radical enzyme activating protein family [Spirochaeta coccoides DSM 17374] Length = 252 Score = 65.0 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 23/107 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADL 73 R +F F GCNL +C +C + G + ++++ Sbjct: 20 RSTIF--FKGCNL-----------RCHWCANPESISMKVRPELEESLGGRIWKLEEVLHD 66 Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 + + + ++ G L+GGEPLLQ D L AL+ G +A+ET Sbjct: 67 VLKDKVFYDESGGGVTLSGGEPLLQADFACALCDALHAHGVAVAIET 113 >gi|226328669|ref|ZP_03804187.1| hypothetical protein PROPEN_02564 [Proteus penneri ATCC 35198] gi|225203402|gb|EEG85756.1| hypothetical protein PROPEN_02564 [Proteus penneri ATCC 35198] Length = 53 Score = 65.0 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Query: 168 FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210 +LQP+ E T L I C + WR S+QTHK++ I Sbjct: 13 APVVALQPISCK--ESATALCIKTCIER-NWRFSMQTHKYLNI 52 >gi|313673576|ref|YP_004051687.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940332|gb|ADR19524.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Calditerrivibrio nitroreducens DSM 19672] Length = 230 Score = 65.0 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 41/154 (26%) Query: 1 MKLYSIKEIFLTLQGEGG----HAGRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDF 54 M + EI E G+VA VF GCNL +CR+C Sbjct: 1 MWTLPVSEI------ETVSLTNFTGKVACTVF--TIGCNL-----------RCRYCYNKS 41 Query: 55 VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFE 113 + ++ K +++++ D I+ + +TGGEPLL + + L GFE Sbjct: 42 LVLKTEKP--VDIEKIRDKIKTL------PLKNIAITGGEPLLHYSLKDFLYFLKDSGFE 93 Query: 114 IAVETNGTIE-------PPQGIDWICVSPKAGCD 140 I ++TNGT + ID++ V KA D Sbjct: 94 IKLDTNGTFPERLQNILDKKLIDYVAVDIKAFTD 127 >gi|302874687|ref|YP_003843320.1| pyruvate formate-lyase activating enzyme [Clostridium cellulovorans 743B] gi|302577544|gb|ADL51556.1| pyruvate formate-lyase activating enzyme [Clostridium cellulovorans 743B] Length = 240 Score = 64.7 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 33/102 (32%), Positives = 42/102 (41%), Gaps = 24/102 (23%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GCNL +C +C DT G Y +QL I Sbjct: 24 VF--LQGCNL-----------RCLYCHNPDT----WACNGGTEYTPEQLLKKIVRFKPYF 66 Query: 82 EKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETNG 120 EK G +GGEPLLQ + LI+AL + G A++T G Sbjct: 67 EKSGGGVTFSGGEPLLQYNF-LIEALKLCKENGIHTAIDTAG 107 >gi|297587883|ref|ZP_06946527.1| pyruvate formate-lyase activating enzyme [Finegoldia magna ATCC 53516] gi|297574572|gb|EFH93292.1| pyruvate formate-lyase activating enzyme [Finegoldia magna ATCC 53516] Length = 501 Score = 64.7 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 22/105 (20%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77 G +F GC L +C +C D+ + G Y VD++ + + Sbjct: 22 GNRTIFF-LQGCPL-----------KCVYCHNPDSQNIH----GGKEYAVDEIIKIAKRY 65 Query: 78 WITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +EG ++GGEPLLQ + L++ L + GF ++T+G Sbjct: 66 KPYHGQEGG-VTISGGEPLLQGEFLKELVKRLKQEGFNTCLDTSG 109 >gi|307690701|ref|ZP_07633147.1| pyruvate formate-lyase activating enzyme [Clostridium cellulovorans 743B] Length = 229 Score = 64.7 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 33/102 (32%), Positives = 42/102 (41%), Gaps = 24/102 (23%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GCNL +C +C DT G Y +QL I Sbjct: 13 VF--LQGCNL-----------RCLYCHNPDT----WACNGGTEYTPEQLLKKIVRFKPYF 55 Query: 82 EKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETNG 120 EK G +GGEPLLQ + LI+AL + G A++T G Sbjct: 56 EKSGGGVTFSGGEPLLQYNF-LIEALKLCKENGIHTAIDTAG 96 >gi|78778108|ref|YP_394423.1| hypothetical protein Suden_1914 [Sulfurimonas denitrificans DSM 1251] gi|78498648|gb|ABB45188.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM 1251] Length = 221 Score = 64.7 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 10/99 (10%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 GC E + CDT + + + +L+ V Sbjct: 7 GC-----EESTPNGEKIVGCDTIYAVNREHFLQNWIPITSAHELLNILNFYDLPFAVDVV 61 Query: 90 LTGGEPLLQVDVP----LIQALNKRGFEIAVETNGTIEP 124 LTGGEPL+ + P ++ L +RG +I ETNGT+ Sbjct: 62 LTGGEPLIYANEPIFIEFLEKLYERGHKITFETNGTLSV 100 >gi|265750428|ref|ZP_06086491.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 3_1_33FAA] gi|263237324|gb|EEZ22774.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 3_1_33FAA] Length = 242 Score = 64.7 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 25/115 (21%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GCN +C +C DT + T+ +D++ Sbjct: 11 GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDTIDTKGESTET---TIDEI 54 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K+G +GGEP LQ +PL Q L ++ I ++TNG+I Sbjct: 55 VRMAVSQKAFFGKKGG-VTFSGGEPTLQAKALIPLFQRLKEQNIHICIDTNGSIW 108 >gi|237747112|ref|ZP_04577592.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes HOxBLS] gi|229378463|gb|EEO28554.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes HOxBLS] Length = 227 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 30/139 (21%) Query: 10 FLTLQGEGGHAGRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 F T+ GR+A VFC GC +CR+C + G GGRY Sbjct: 17 FTTID----FPGRLAAVVFC--QGCP-----------WRCRYCHNRHLLPTGE-GGRYLW 58 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE--- 123 + ++ + E V +GGEPLLQ +P L+++GFE+A+ T+G Sbjct: 59 QDVLAWLKTRQGLLEG----VVFSGGEPLLQKQLPEAADQLHRQGFEVALHTSGVYPERL 114 Query: 124 --PPQGIDWICVSPKAGCD 140 I+W+ + KA D Sbjct: 115 AKVLPLIEWVGLDIKAPFD 133 >gi|315503285|ref|YP_004082172.1| pyruvate formate-lyase activating enzyme [Micromonospora sp. L5] gi|315409904|gb|ADU08021.1| pyruvate formate-lyase activating enzyme [Micromonospora sp. L5] Length = 261 Score = 64.3 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 29/133 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF +GC L +CR+C DT + G G R VD++ L Sbjct: 41 VF--LAGCPL-----------RCRYCHSPDTWY----GRSGRRRTVDEMVTLATRYRRFI 83 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALN-KRGFEIAVETNGTI------EPPQGIDWIC 132 + G ++GGEPLLQ L++ + G A++T+G + D + Sbjct: 84 QVAGGGVTVSGGEPLLQPAFTRELLRRCHDDLGLHTALDTSGFLGVRADDALLDATDLVL 143 Query: 133 VSPKAGCDLKIKG 145 + KAG + Sbjct: 144 LDVKAGNPQTYRR 156 >gi|302866870|ref|YP_003835507.1| pyruvate formate-lyase activating enzyme [Micromonospora aurantiaca ATCC 27029] gi|302569729|gb|ADL45931.1| pyruvate formate-lyase activating enzyme [Micromonospora aurantiaca ATCC 27029] Length = 275 Score = 64.3 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 29/133 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF +GC L +CR+C DT + G G R VD++ L Sbjct: 55 VF--LAGCPL-----------RCRYCHSPDTWY----GRSGRRRTVDEMVTLATRYRRFI 97 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALN-KRGFEIAVETNGTI------EPPQGIDWIC 132 + G ++GGEPLLQ L++ + G A++T+G + D + Sbjct: 98 QVAGGGVTVSGGEPLLQPAFTRELLRRCHDDLGLHTALDTSGFLGVRADDALLDATDLVL 157 Query: 133 VSPKAGCDLKIKG 145 + KAG + Sbjct: 158 LDVKAGNPQTYRR 170 >gi|319643534|ref|ZP_07998157.1| pyruvate formate-lyase 1 activating enzyme [Bacteroides sp. 3_1_40A] gi|317384939|gb|EFV65895.1| pyruvate formate-lyase 1 activating enzyme [Bacteroides sp. 3_1_40A] Length = 242 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 25/115 (21%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GCN +C +C DT + +G + + Sbjct: 11 GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT--IDTKGESTETAIDEIV 55 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + ++ G+K G +GGEP LQ +PL Q L ++ I ++TNG+I Sbjct: 56 HMAVSQKAFFGKKGG--VTFSGGEPTLQAKALIPLFQRLKEQNIHICIDTNGSIW 108 >gi|254883806|ref|ZP_05256516.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 4_3_47FAA] gi|254836599|gb|EET16908.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 4_3_47FAA] Length = 240 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 25/115 (21%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GCN +C +C DT + +G + + Sbjct: 11 GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT--IDTKGESTETAIDEIV 55 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + ++ G+K G +GGEP LQ +PL Q L ++ I ++TNG+I Sbjct: 56 HMAVSQKAFFGKKGG--VTFSGGEPTLQAKALIPLFQRLKEQNIHICIDTNGSIW 108 >gi|150005399|ref|YP_001300143.1| putative pyruvate formate-lyase 1 activating enzyme [Bacteroides vulgatus ATCC 8482] gi|294777180|ref|ZP_06742637.1| putative pyruvate formate-lyase 1-activating enzyme [Bacteroides vulgatus PC510] gi|149933823|gb|ABR40521.1| putative pyruvate formate-lyase 1 activating enzyme [Bacteroides vulgatus ATCC 8482] gi|294449049|gb|EFG17592.1| putative pyruvate formate-lyase 1-activating enzyme [Bacteroides vulgatus PC510] Length = 242 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 25/115 (21%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GCN +C +C DT + +G + + Sbjct: 11 GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT--IDTKGESTETAIDEIV 55 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + ++ G+K G +GGEP LQ +PL Q L ++ I ++TNG+I Sbjct: 56 RMAVSQKAFFGKKGG--VTFSGGEPTLQAKALIPLFQRLKEQNIHICIDTNGSIW 108 >gi|51243917|ref|YP_063801.1| pyruvate formate-lyase activating enzyme [Desulfotalea psychrophila LSv54] gi|50874954|emb|CAG34794.1| related to pyruvate formate-lyase activating enzyme [Desulfotalea psychrophila LSv54] Length = 206 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 58/162 (35%), Gaps = 29/162 (17%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG--IQGTKGGRYNVDQLADLIEEQW 78 G A GCN +C FC G + V+++ + E+ Sbjct: 16 GVPAAIIFTQGCNY-----------RCPFC---HNGNLLPMQGSEEIEVEEVLSWLRERQ 61 Query: 79 ITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG-------IDW 130 + V+TGGEP LQ D+ I + + G++I +++NG+ ID+ Sbjct: 62 GKLDG----VVITGGEPTLQADLGSFICQIREMGYKIKLDSNGSHPEVLEKLLDQGLIDF 117 Query: 131 ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 + + KA K +K+ + S E E Sbjct: 118 VAMDVKAPAA-KYSRLCGVKVNLEHIEQSMEIIAKSGVEHLF 158 >gi|237727146|ref|ZP_04557627.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D4] gi|229434002|gb|EEO44079.1| pyruvate formate-lyase activating enzyme [Bacteroides dorei 5_1_36/D4] Length = 242 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 25/115 (21%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GCN +C +C DT + T+ +D++ Sbjct: 11 GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDTIDTKGESTET---TIDEI 54 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K+G +GGEP LQ +PL Q L ++ I ++TNG+I Sbjct: 55 VRMAVSQKAFFGKKGG-VTFSGGEPTLQAKALIPLFQRLKEQSIHICIDTNGSIW 108 >gi|154500609|ref|ZP_02038647.1| hypothetical protein BACCAP_04282 [Bacteroides capillosus ATCC 29799] gi|150270498|gb|EDM97807.1| hypothetical protein BACCAP_04282 [Bacteroides capillosus ATCC 29799] Length = 253 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 46/127 (36%), Gaps = 29/127 (22%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F T+ G G VF F GC + +C +C DT G Sbjct: 12 VESFGTVDGPGIRFV----VF--FQGCPM-----------RCLYCHNPDT----WGTEGG 50 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 VD+L + G TGGEPLLQ+ L A ++G ++T+G Sbjct: 51 TEMTVDELLAAYQRNK--GFYRQGGITATGGEPLLQLPFLTELFTAAKEQGIHTCLDTSG 108 Query: 121 TIEPPQG 127 + P Sbjct: 109 IVYRPDH 115 >gi|212694897|ref|ZP_03303025.1| hypothetical protein BACDOR_04431 [Bacteroides dorei DSM 17855] gi|212662575|gb|EEB23149.1| hypothetical protein BACDOR_04431 [Bacteroides dorei DSM 17855] Length = 233 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 25/115 (21%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GCN +C +C DT + T+ +D++ Sbjct: 2 GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDTIDTKGESTET---TIDEI 45 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K+G +GGEP LQ +PL Q L ++ I ++TNG+I Sbjct: 46 VRMAVSQKAFFGKKGG-VTFSGGEPTLQAKALIPLFQRLKEQSIHICIDTNGSIW 99 >gi|225376505|ref|ZP_03753726.1| hypothetical protein ROSEINA2194_02147 [Roseburia inulinivorans DSM 16841] gi|225211677|gb|EEG94031.1| hypothetical protein ROSEINA2194_02147 [Roseburia inulinivorans DSM 16841] Length = 278 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 40/187 (21%) Query: 8 EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F T+ G G VF F GC + +C++C DT + G Sbjct: 22 ETFGTVDGPGVRFV----VF--FQGCPM-----------RCQYCHNPDT----WKIEDGE 60 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121 D++ D E + TGGEP+LQ+D L ++G ++T+G Sbjct: 61 EMTADEIIDRFERNR--SFYQTGGITATGGEPMLQLDFLTELFTKAKEKGIHTCLDTSGI 118 Query: 122 IEPPQG----------IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171 + P + I +S D +++ ++L V V + ++ + ++ Sbjct: 119 MFPKKHTGTDQNSEREISLTGISENMASD-RMEKIEQLMSVTDLVMLDIKHINDEEHQKL 177 Query: 172 SLQPMDG 178 + QP Sbjct: 178 TGQPNSN 184 >gi|260589643|ref|ZP_05855556.1| pyruvate formate-lyase 1-activating enzyme [Blautia hansenii DSM 20583] gi|331083074|ref|ZP_08332191.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae bacterium 6_1_63FAA] gi|260539883|gb|EEX20452.1| pyruvate formate-lyase 1-activating enzyme [Blautia hansenii DSM 20583] gi|330405076|gb|EGG84613.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae bacterium 6_1_63FAA] Length = 250 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 27/118 (22%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64 E F T+ G G R+ VF GC + +C +C DT KG Sbjct: 13 ETFGTVDGPGI---RLVVF--LQGCPM-----------RCLYCHNPDT----WAPKKGQS 52 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 V+++ ++ E+ G + +TGGEPL+Q++ L QA + ++T+G Sbjct: 53 MTVEEILEIYEKNK--GFYQNGGITVTGGEPLMQLEFVTALFQAAKSKNIHTCLDTSG 108 >gi|150389978|ref|YP_001320027.1| pyruvate formate-lyase activating enzyme [Alkaliphilus metalliredigens QYMF] gi|149949840|gb|ABR48368.1| pyruvate formate-lyase activating enzyme [Alkaliphilus metalliredigens QYMF] Length = 248 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 27/119 (22%) Query: 8 EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F T+ G G + +F F GC L +C++C DT G Sbjct: 11 ETFGTVDGPGIRYI----IF--FQGCPL-----------RCKYCHNRDT----WDLQGGK 49 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 VD++ I++ G ++GGEP LQ+ L+ + K A++T+G Sbjct: 50 EMTVDEVISDIKKYIPFMVSSGGGVTISGGEPTLQMEFLTALLLEIKKLNLHTAIDTSG 108 >gi|320535961|ref|ZP_08036025.1| pyruvate formate-lyase 1-activating enzyme [Treponema phagedenis F0421] gi|320147188|gb|EFW38740.1| pyruvate formate-lyase 1-activating enzyme [Treponema phagedenis F0421] Length = 239 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 45/122 (36%), Gaps = 20/122 (16%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 M L E F T+ G G R VF GC L C CDT Q Sbjct: 1 MALIHSHESFGTVDGPGI---RYVVF--LQGCPLRCKY--------CHNCDT---WFQKD 44 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 ++ + I + G +TGGEPL+Q + L + K G A++T Sbjct: 45 AKFVETAEETFEKIIKYKRFIRSGG--VTVTGGEPLMQPEYVCELFKLCKKEGIHTAIDT 102 Query: 119 NG 120 +G Sbjct: 103 SG 104 >gi|239628873|ref|ZP_04671904.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519019|gb|EEQ58885.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 255 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 63/177 (35%), Gaps = 39/177 (22%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F T+ G G +F SGC + +C +C DT G Sbjct: 10 VESFGTVDGPGIRM---VIF--LSGCPM-----------RCLYCHNPDT----WDPKGGN 49 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121 V+++ E+ +K G ++GGEPL+Q+ L +A R ++T+G Sbjct: 50 PMTVEEILAQFEQARPFYKKGG--ITVSGGEPLMQIRFVTELFEAARARNIHTCLDTSG- 106 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178 I +P + + L V V + ++ + + QP D Sbjct: 107 ---------ITFNP--SSEGIMAMFDRLMAVTDLVMLDIKHIDPEEHIKLCAQPQDN 152 >gi|224023837|ref|ZP_03642203.1| hypothetical protein BACCOPRO_00554 [Bacteroides coprophilus DSM 18228] gi|224017059|gb|EEF75071.1| hypothetical protein BACCOPRO_00554 [Bacteroides coprophilus DSM 18228] Length = 242 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 29/129 (22%) Query: 3 LYSIKEIFLTLQGEGGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVG 56 + + + +L G + G R+ VF GCN +C +C DT + Sbjct: 1 MIRVH-SYESL---GTYDGPGIRLVVF--LQGCNF-----------RCLYCANPDT--ID 41 Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEI 114 +G + L + ++ G+K G +GGEP Q +PL ++L + G I Sbjct: 42 AKGESKETSPEEILKMAVSQKPFFGKKGG--ITFSGGEPTFQARELIPLFRSLKEAGIHI 99 Query: 115 AVETNGTIE 123 V+TNG+I Sbjct: 100 CVDTNGSIW 108 >gi|237710756|ref|ZP_04541237.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 9_1_42FAA] gi|229455478|gb|EEO61199.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 9_1_42FAA] Length = 168 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 25/115 (21%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GCN +C +C DT + T+ +D++ Sbjct: 11 GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDTIDTKGESTET---TIDEI 54 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K+G +GGEP LQ +PL Q L ++ I ++TNG+I Sbjct: 55 VRMAVSQKAFFGKKGG-VTFSGGEPTLQAKALIPLFQRLKEQSIHICIDTNGSIW 108 >gi|307693876|ref|ZP_07636113.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Ruminococcaceae bacterium D16] Length = 230 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 23/103 (22%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG--IQGTKGGRYNVDQLADLIEEQWITG 81 VF GC+ +C FC G + N ++L ++++ Sbjct: 21 TVF--LGGCDF-----------RCPFC---HNGELVLSPAPAEMNQEELLAFLKKRQGLL 64 Query: 82 EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 + +TGGEPLL+ D+P L++A+ G+ + ++TNG+ Sbjct: 65 DG----VCITGGEPLLRPDLPQLLEAVKALGYPVKLDTNGSHP 103 >gi|294792114|ref|ZP_06757262.1| Fe-S oxidoreductase of MoaA family protein [Veillonella sp. 6_1_27] gi|294457344|gb|EFG25706.1| Fe-S oxidoreductase of MoaA family protein [Veillonella sp. 6_1_27] Length = 198 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 60/198 (30%), Gaps = 64/198 (32%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRG----------- 111 V ++AD+IE +TGGEPLLQ V LI LN+R Sbjct: 1 MTVAEVADVIECLG------NHRITITGGEPLLQEAAVVELIDELNRRKALKIQDSPSSQ 54 Query: 112 -----------------------FEIAVETNGTIEPPQGID--WICVSPKAGCDLK---- 142 ++ +ETNGTI P D W K L Sbjct: 55 SDLTRINDVDKDVDKRERPNNSPYDFNIETNGTIVPSFHRDNVWFTYDYKTPSSLAEESM 114 Query: 143 ----IKGGQE---LKLVF---PQVNVSPENYIGFD-FERFSLQPMDGPFLEENTNLAISY 191 K E +K V ++ + + + P+ G + I Y Sbjct: 115 NIDIFKVATERDLIKFVVGSPEDLDCMRRIISKYPTVAQIYVSPVWGQIEAAS---IIDY 171 Query: 192 CFQNP--KWRLSVQTHKF 207 R +Q HKF Sbjct: 172 MKTYNLQNVRFQLQIHKF 189 >gi|317052447|ref|YP_004113563.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfurispirillum indicum S5] gi|316947531|gb|ADU67007.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfurispirillum indicum S5] Length = 236 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 29/128 (22%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 VF GCNL +CR+C + + + GR DQL + I+ I Sbjct: 26 TVF--THGCNL-----------RCRYCHNPALVLG--QPGRSRQDQLLEYIDRHQIGA-- 68 Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPP-------QGIDWICVSP 135 +TGGEPL Q ++ L+Q L R I ++TNGT+ + +D++ V Sbjct: 69 ----VAITGGEPLFQRELETLLQQLRSRKIRIKLDTNGTLPHRLKQVLEQELVDFVAVDV 124 Query: 136 KAGCDLKI 143 KA D + Sbjct: 125 KAFNDADM 132 >gi|302384753|ref|YP_003820575.1| pyruvate formate-lyase activating enzyme [Clostridium saccharolyticum WM1] gi|302195381|gb|ADL02952.1| pyruvate formate-lyase activating enzyme [Clostridium saccharolyticum WM1] Length = 257 Score = 62.3 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 27/129 (20%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64 E F T+ G G +F GC + +C++C DT + G Sbjct: 9 ESFGTVDGPGVRM---VIF--LQGCPM-----------RCQYCHNPDT----WKMAGGTP 48 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 ++L E G TGGEPL+Q+D L +A K+ ++T+G + Sbjct: 49 MTAEELLKQFES--SRNFYRGGGITATGGEPLMQLDFVTELFEAAKKKDIHTCLDTSGVM 106 Query: 123 EPPQGIDWI 131 G D++ Sbjct: 107 FHRNGPDYL 115 >gi|307718379|ref|YP_003873911.1| hypothetical protein STHERM_c06800 [Spirochaeta thermophila DSM 6192] gi|306532104|gb|ADN01638.1| hypothetical protein STHERM_c06800 [Spirochaeta thermophila DSM 6192] Length = 240 Score = 62.3 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 22/126 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCNL +C +C + +G + + I + Sbjct: 27 TGGCNL-----------RCPYC----HNPELVEGDPEDFLPWEE-IRAFLTRRRGILKGV 70 Query: 89 VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLK 142 V TGGEPLL+ +P LI+ + G+ ++TNGT+ +D++ V K DL Sbjct: 71 VFTGGEPLLKGFLPSLIEEVRGMGYACKLDTNGTLPQRLEEVLPLLDYVAVDFKTAPDLY 130 Query: 143 IKGGQE 148 + G + Sbjct: 131 HRVGGD 136 >gi|315185591|gb|EFU19360.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Spirochaeta thermophila DSM 6578] Length = 240 Score = 62.3 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 22/126 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCNL +C +C + +G + + I + Sbjct: 27 TGGCNL-----------RCPYC----HNPELVEGDSEDFLPWEE-IRAFLTRRRGILKGV 70 Query: 89 VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLK 142 V TGGEPLL+ +P LI+ + G+ ++TNGT+ +D++ V K DL Sbjct: 71 VFTGGEPLLKGFLPSLIEEVRGMGYACKLDTNGTLPQRLEEVLPLLDYVAVDFKTAPDLY 130 Query: 143 IKGGQE 148 + G + Sbjct: 131 HRVGGD 136 >gi|299143206|ref|ZP_07036286.1| pyruvate formate-lyase 1-activating enzyme [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517691|gb|EFI41430.1| pyruvate formate-lyase 1-activating enzyme [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 248 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 21/105 (20%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77 G VF GC L +C FC DT G V+++ + + Sbjct: 17 GVRTVFF-LQGCPL-----------RCAFCHNVDTQ----NPFGGRNITVEEIVERSRKM 60 Query: 78 WITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120 +GGEP L L I+A+ G + V+T+G Sbjct: 61 KPYFRNGKGGVTFSGGEPTLDGKFLLDAIKAVKAEGIHVTVDTSG 105 >gi|149189655|ref|ZP_01867937.1| pyruvate formate lyase II activase [Vibrio shilonii AK1] gi|148836467|gb|EDL53422.1| pyruvate formate lyase II activase [Vibrio shilonii AK1] Length = 303 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 26/131 (19%) Query: 11 LTLQ-GEGGHAGRVAVFCRFSGCNLWS-----------GREQDRLSAQCRFCDTDFVGIQ 58 +L GEG VF F GC L R A+C CD Sbjct: 41 YSLNDGEGIRT---VVF--FKGCPLKCPWCANPESRSIDLVNIRREAKCLHCDVCEQDAD 95 Query: 59 GTKGGRY-------NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNK 109 G + +D+L I + + + G L+GGE L+ + L++ L + Sbjct: 96 ECPSGAFEQVGYDVTIDELLKEIAKDDVFYQTSGGGVTLSGGEILVHGRFCIELLKQLRR 155 Query: 110 RGFEIAVETNG 120 G++ A+ET+G Sbjct: 156 LGYKTAIETSG 166 >gi|198275686|ref|ZP_03208217.1| hypothetical protein BACPLE_01858 [Bacteroides plebeius DSM 17135] gi|198271315|gb|EDY95585.1| hypothetical protein BACPLE_01858 [Bacteroides plebeius DSM 17135] Length = 242 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 29/129 (22%) Query: 3 LYSIKEIFLTLQGEGGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVG 56 + + + +L G + G R+ VF GCN +C +C DT + Sbjct: 1 MIRVH-SYESL---GTYDGPGIRLVVF--LQGCNF-----------RCLYCANPDT--ID 41 Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEI 114 +G + L + ++ G+K G +GGEP Q VPL + L + G I Sbjct: 42 AKGESKETAPEEILKMAVSQKPFFGKKGG--ITFSGGEPTFQAKALVPLFRMLKEAGIHI 99 Query: 115 AVETNGTIE 123 V+TNG I Sbjct: 100 CVDTNGGIW 108 >gi|225016811|ref|ZP_03706003.1| hypothetical protein CLOSTMETH_00723 [Clostridium methylpentosum DSM 5476] gi|224950479|gb|EEG31688.1| hypothetical protein CLOSTMETH_00723 [Clostridium methylpentosum DSM 5476] Length = 266 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 24/109 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC L +C FC DT G G + +L D I Sbjct: 51 VF--LQGCPL-----------RCLFCHNPDT----WDGKAGREVSAQELVDEILTYRNYI 93 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGI 128 +K G L+GGEPLLQ +++ + G AV+T+G I + + Sbjct: 94 KKGG--VTLSGGEPLLQAQFTAEVLRLCKENGLHTAVDTSGCIPLERAL 140 >gi|225569138|ref|ZP_03778163.1| hypothetical protein CLOHYLEM_05218 [Clostridium hylemonae DSM 15053] gi|225161937|gb|EEG74556.1| hypothetical protein CLOHYLEM_05218 [Clostridium hylemonae DSM 15053] Length = 230 Score = 61.2 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 18/101 (17%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F +GCN +C FC + + K ++++ ++++ + Sbjct: 21 TIF--TAGCNF-----------RCPFCHNASLVVDTYKNEEITQEEVSAFLKKRMGVLDG 67 Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 +TGGEPL+Q D+ P ++ + + G+ + ++TNG+ Sbjct: 68 ----VCVTGGEPLIQSDIEPFLRQIKEMGYAVKLDTNGSFP 104 >gi|195953775|ref|YP_002122065.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Hydrogenobaculum sp. Y04AAS1] gi|195933387|gb|ACG58087.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Hydrogenobaculum sp. Y04AAS1] Length = 234 Score = 61.2 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 24/115 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 F GCNL +C +C + ++ T+ + D++ +L+ I+ + + Sbjct: 31 FGGCNL-----------RCPYCHNKDIVLKNTEP--LDTDEVFELL----ISRKHLIEWV 73 Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP-----QGIDWICVSPK 136 ++GGEP + D V ++ L GF+I ++TNGT + +D++ + K Sbjct: 74 CISGGEPTIYEDKLVDFVKNLKTAGFKIKLDTNGTKPLVIKDVCEFVDYVALDVK 128 >gi|224539029|ref|ZP_03679568.1| hypothetical protein BACCELL_03928 [Bacteroides cellulosilyticus DSM 14838] gi|224519357|gb|EEF88462.1| hypothetical protein BACCELL_03928 [Bacteroides cellulosilyticus DSM 14838] Length = 232 Score = 61.2 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 26/134 (19%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GC +C +C DT I G +++ Sbjct: 2 GTFDGPGLRLVVF--LQGCPF-----------RCLYCANPDT----IDAKGGTPTPPEEI 44 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGI 128 + Q + K+G +GGEP LQ +PL + L G I ++TNG I + Sbjct: 45 LQMAISQKVFFGKKGG-ITFSGGEPTLQAEALIPLFKDLKANGIHICLDTNGGIWNEKVE 103 Query: 129 DWICVSPKAGCDLK 142 + + ++ DLK Sbjct: 104 ELVSLTDLVLLDLK 117 >gi|189461245|ref|ZP_03010030.1| hypothetical protein BACCOP_01895 [Bacteroides coprocola DSM 17136] gi|189432062|gb|EDV01047.1| hypothetical protein BACCOP_01895 [Bacteroides coprocola DSM 17136] Length = 242 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 29/129 (22%) Query: 3 LYSIKEIFLTLQGEGGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVG 56 + + + +L G + G R+ VF GCN +C +C DT + Sbjct: 1 MIRVH-SYESL---GTYDGPGIRLVVF--LQGCNF-----------RCLYCANPDT--ID 41 Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEI 114 +G D L + ++ G+K G +GGEP Q +PL + L + G I Sbjct: 42 AKGESKETSPEDILKMAVSQKPFFGKKGG--ITFSGGEPTFQAKALIPLFRMLKEEGIHI 99 Query: 115 AVETNGTIE 123 V+TNG I Sbjct: 100 CVDTNGGIW 108 >gi|125973026|ref|YP_001036936.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum ATCC 27405] gi|256004823|ref|ZP_05429798.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum DSM 2360] gi|281417236|ref|ZP_06248256.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum JW20] gi|125713251|gb|ABN51743.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum ATCC 27405] gi|255991273|gb|EEU01380.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum DSM 2360] gi|281408638|gb|EFB38896.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum JW20] gi|316940739|gb|ADU74773.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum DSM 1313] Length = 238 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 41/203 (20%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F TL G G RF GC L +C +C DT V Sbjct: 11 ESFGTLDGPG---------IRFVVFMQGCPL-----------RCIYCHNRDTWDVNAGSE 50 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 R +D++ I+ ++G +TGGEP+LQ D + + ++G A++T Sbjct: 51 YTPRQVIDEMMKYIDYIKVSGGG----ITVTGGEPVLQADFVAEVFRLAKEQGVHTALDT 106 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RF 171 NG + + I + D+K + K++ N + + + + R+ Sbjct: 107 NGFADIEKVERLIKYTDLVLLDIKHAREDKHKIITGVSNEKIKRFALYLSDQGVPIWIRY 166 Query: 172 SLQPMDGPFLEENTNLAISYCFQ 194 L P E++ +A + + Sbjct: 167 VLVPGY-TDDEDDLKMAADFIKK 188 >gi|304315595|ref|YP_003850740.1| pyruvate formate-lyase activating enzyme [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777097|gb|ADL67656.1| pyruvate formate-lyase activating enzyme [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 242 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 28/160 (17%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C +C DT + G + D++ + ++ Sbjct: 24 VFM--QGC-----------LLRCAYCHNPDTWHLN----DGKEASTDEIFNDVKRYIPYM 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139 + G LTGGEP LQV+ L + L A++T+G ++ + + + + Sbjct: 67 KASGGGVTLTGGEPTLQVEFCTDLFKKLKAENIHTAIDTSGFVDIEKVEELVKYTDLFLL 126 Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 D+K E K + N + L +D Sbjct: 127 DIKHIDDDEHKKLTGVSNRKTLKFAK------YLSDIDKK 160 >gi|160937727|ref|ZP_02085087.1| hypothetical protein CLOBOL_02620 [Clostridium bolteae ATCC BAA-613] gi|158439372|gb|EDP17124.1| hypothetical protein CLOBOL_02620 [Clostridium bolteae ATCC BAA-613] Length = 259 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 62/176 (35%), Gaps = 39/176 (22%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64 E F T+ G G +F SGC + +C +C DT G Sbjct: 18 ESFGTVDGPGIRM---VIF--LSGCPM-----------RCLYCHNPDT----WDPKGGSP 57 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 +++ D E+ +K G ++GGEPL+Q+ L + K G ++T+G Sbjct: 58 MTAEEILDQYEQARPFYKKGG--ITVSGGEPLMQIGFVTELFEKAKKSGIHTCLDTSG-- 113 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178 I +P G + L + + ++ + + QP D Sbjct: 114 --------ITFNP--GSQAVMAHFDRLLASTDLILLDIKHIDPKEHVKLCAQPQDN 159 >gi|225575496|ref|ZP_03784106.1| hypothetical protein RUMHYD_03587 [Blautia hydrogenotrophica DSM 10507] gi|225037293|gb|EEG47539.1| hypothetical protein RUMHYD_03587 [Blautia hydrogenotrophica DSM 10507] Length = 231 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 19/126 (15%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 VF GCN +C FC + + + + + + + ++++ + Sbjct: 20 ATVF--LGGCNF-----------RCPFCHNSSLVLHENQQPEISQEDVLNFLKKRRGILD 66 Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWIC-VSPKAGCD 140 +TGGEP LQ +P + + + G+ I ++TNG+ W + K D Sbjct: 67 G----VCITGGEPTLQKALPDFLSQIKELGYHIKLDTNGSHPQIIKTLWESHLIDKVAMD 122 Query: 141 LKIKGG 146 +K Sbjct: 123 IKTSKA 128 >gi|118444194|ref|YP_878525.1| pyruvate formate-lyase activating enzyme [Clostridium novyi NT] gi|118134650|gb|ABK61694.1| pyruvate formate-lyase activating enzyme [Clostridium novyi NT] Length = 240 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 23/101 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC L +C FC DT G + ++L + I Sbjct: 29 VF--LQGCPL-----------RCSFCHNPDT----WDFNTGSKTTPEELVEKIIRFKPYF 71 Query: 82 EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120 + G +GGEPL+Q + L ++ + A++T+G Sbjct: 72 KNNGG-VTFSGGEPLMQPEFLLKALKLCKENNIHTAIDTSG 111 >gi|210613376|ref|ZP_03289696.1| hypothetical protein CLONEX_01903 [Clostridium nexile DSM 1787] gi|210151218|gb|EEA82226.1| hypothetical protein CLONEX_01903 [Clostridium nexile DSM 1787] Length = 250 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 31/159 (19%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F F GC + +C +C DT + KG + VD++ + Sbjct: 24 IF--FQGCPM-----------RCLYCHNPDT----WEPNKGTQMTVDEVLEGFYSNMPFY 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWIC------- 132 G +TGGEP++Q+D + L L+K G ++++G + P ++ Sbjct: 67 HNGG--VTVTGGEPMMQMDFLIELFTKLHKDGIHTCIDSSGIMFQPDNETFMNKLDTLLE 124 Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171 V+ D+K Q+ K + N + + E+ Sbjct: 125 VTDLIMLDIKHINPQKHKELTAHSNERILAFAKYLDEKH 163 >gi|301061749|ref|ZP_07202489.1| anaerobic ribonucleoside-triphosphate reductase activating protein [delta proteobacterium NaphS2] gi|300444137|gb|EFK08162.1| anaerobic ribonucleoside-triphosphate reductase activating protein [delta proteobacterium NaphS2] Length = 234 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 68/179 (37%), Gaps = 33/179 (18%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF +GCN C +C D V + G ++ ++ +E + Sbjct: 22 VF--LAGCNFT-----------CPYCHNPD--LVRRKPFNGSHFDEKKIYAFLESRKGFL 66 Query: 82 EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPP-------QGIDWICV 133 + V++GGEP L +P ++ + G+ + ++TNGT ID+I + Sbjct: 67 DG----VVISGGEPTLNEHLPHFLERIKHLGYPVKLDTNGTRPRMVRRLIDNGLIDYIAM 122 Query: 134 SPKA---GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAI 189 KA L I G + + V + + + +F ++PM N AI Sbjct: 123 DIKADPLAYPLYIAGSYNPQSILTSVEIIRNSELPHEFRTTCVKPMVNEQGIRNIAQAI 181 >gi|313145793|ref|ZP_07807986.1| pyruvate formate-lyase activating enzyme [Bacteroides fragilis 3_1_12] gi|313134560|gb|EFR51920.1| pyruvate formate-lyase activating enzyme [Bacteroides fragilis 3_1_12] Length = 241 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GCN +C +C DT I+ G + D++ Sbjct: 11 GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IEAKGGTPTHPDEI 53 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K+G +GGEP Q +PL + L + G I ++TNG + Sbjct: 54 VRMAVSQKAFFGKKGG-ITFSGGEPTFQAKALIPLFKRLKEAGIHICLDTNGGLW 107 >gi|255008076|ref|ZP_05280202.1| putative pyruvate formate-lyase 1 activating enzyme [Bacteroides fragilis 3_1_12] Length = 232 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GCN +C +C DT I+ G + D++ Sbjct: 2 GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IEAKGGTPTHPDEI 44 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K+G +GGEP Q +PL + L + G I ++TNG + Sbjct: 45 VRMAVSQKAFFGKKGG-ITFSGGEPTFQAKALIPLFKRLKEAGIHICLDTNGGLW 98 >gi|160882012|ref|YP_001560980.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium phytofermentans ISDg] gi|160430678|gb|ABX44241.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium phytofermentans ISDg] Length = 232 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 8/113 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 +L + +C FC + I + +Y+ D++ + + + E ++G Sbjct: 17 HLACTIFTKGCNFRCPFCQNASLVISSEEIPQYSEDEILNFLSSRKHILEG----ICISG 72 Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIE--PPQGIDWICVSPKAGCDLK 142 GEP +Q D+ I+ + G+ + ++TNGT Q ID V D+K Sbjct: 73 GEPTMQPDLIDFIRKVKSMGYFVKLDTNGTHPKLIRQLIDEQSVD-MVAMDIK 124 >gi|298482014|ref|ZP_07000203.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. D22] gi|298271878|gb|EFI13450.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. D22] Length = 242 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GCN +C +C DT I G G +++ Sbjct: 12 GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IAGKGGTPTPPEEI 54 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K G +GGEP Q VPL++ L ++G + +++NG I Sbjct: 55 VRMAMSQRPFFGKRGG-VTFSGGEPTFQAKALVPLVRELKEKGIHVCIDSNGGIW 108 >gi|291514350|emb|CBK63560.1| pyruvate formate-lyase 1-activating enzyme [Alistipes shahii WAL 8301] Length = 232 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 26/118 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GCN +C +C DT I+ G + ++ Sbjct: 2 GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IEAGAGTLTDPAEI 44 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQ 126 + +Q + G +GGEP Q VPL+++L + G + +++NG + P Sbjct: 45 LRMAVDQKPFFGRRGG-VTFSGGEPTFQAAELVPLVKSLKEAGIHVCIDSNGGVWNPA 101 >gi|237715802|ref|ZP_04546283.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D1] gi|260171163|ref|ZP_05757575.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D2] gi|293369650|ref|ZP_06616228.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides ovatus SD CMC 3f] gi|294647497|ref|ZP_06725078.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides ovatus SD CC 2a] gi|294807462|ref|ZP_06766265.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides xylanisolvens SD CC 1b] gi|299146489|ref|ZP_07039557.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 3_1_23] gi|229443449|gb|EEO49240.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D1] gi|292635354|gb|EFF53868.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides ovatus SD CMC 3f] gi|292637157|gb|EFF55594.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides ovatus SD CC 2a] gi|294445357|gb|EFG14021.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides xylanisolvens SD CC 1b] gi|298516980|gb|EFI40861.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 3_1_23] Length = 242 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GCN +C +C DT I G G +++ Sbjct: 12 GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IAGKGGTPTPPEEI 54 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K G +GGEP Q VPL++ L ++G + +++NG I Sbjct: 55 VRMAMSQRPFFGKRGG-VTFSGGEPTFQAKALVPLVRELKEKGIHVCIDSNGGIW 108 >gi|329938554|ref|ZP_08287979.1| oxidoreductase [Streptomyces griseoaurantiacus M045] gi|329302527|gb|EGG46418.1| oxidoreductase [Streptomyces griseoaurantiacus M045] Length = 249 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 SGC L +C +C DT + G VD++ IE+ G Sbjct: 33 LSGCPL-----------RCLYCANPDTWHMR----DGRTATVDEIMAEIEKYRPFLTASG 77 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 LTGGE LLQ L++ + G A++T+G Sbjct: 78 GGVTLTGGEALLQPAFTGALLRRCKEAGLHTALDTSG 114 >gi|134297917|ref|YP_001111413.1| pyruvate formate-lyase activating enzyme [Desulfotomaculum reducens MI-1] gi|134050617|gb|ABO48588.1| pyruvate formate-lyase activating enzyme [Desulfotomaculum reducens MI-1] Length = 229 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 23/105 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +CR+C DT G + D++ + Sbjct: 23 VF--FQGC-----------LLRCRYCHNPDT----WDLLGGQEMDSDEIVKKVRRFKSYF 65 Query: 82 EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIEP 124 G L+GGEPLLQ D +Q K G AV+T+G I+ Sbjct: 66 HNNGG-ITLSGGEPLLQPDFAFAILQQCKKEGIHTAVDTSGCIDV 109 >gi|298345424|ref|YP_003718111.1| [formate-C-acetyltransferase]-activating enzyme [Mobiluncus curtisii ATCC 43063] gi|304390979|ref|ZP_07372931.1| pyruvate formate-lyase activating enzyme [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235485|gb|ADI66617.1| [formate-C-acetyltransferase]-activating enzyme [Mobiluncus curtisii ATCC 43063] gi|304325862|gb|EFL93108.1| pyruvate formate-lyase activating enzyme [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 302 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 28/130 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ +F +GC L +C +C DT Q +G L D I Sbjct: 81 RLTIF--LAGCPL-----------RCVYCHNPDT----WQMREGTPILAKDLLDKIVRYK 123 Query: 79 ITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI------EPPQGIDW 130 + G +GGEP++Q L++ G ++T+G++ + + +D Sbjct: 124 AVYKATGGGVTFSGGEPMMQPRFLKKLLRDTKAEGIHTNIDTSGSLGFSFSDQELELLDL 183 Query: 131 ICVSPKAGCD 140 + + K+G Sbjct: 184 VMLDVKSGNP 193 >gi|229543199|ref|ZP_04432259.1| pyruvate formate-lyase activating enzyme [Bacillus coagulans 36D1] gi|229327619|gb|EEN93294.1| pyruvate formate-lyase activating enzyme [Bacillus coagulans 36D1] Length = 245 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 25/119 (21%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F T+ G G R VF GC L +C+FC DT + +G Sbjct: 10 TESFGTVDGPGI---RYVVF--TQGCPL-----------RCKFCHNPDT----WKINEGN 49 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 +V+++ + + + G ++GGEPLL +D + L +A + G A++T G Sbjct: 50 EMSVEEIMSDVRDYLPFIKASGGGITVSGGEPLLHLDFLIELFKACKEIGVHTAIDTAG 108 >gi|255692128|ref|ZP_05415803.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides finegoldii DSM 17565] gi|260622147|gb|EEX45018.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides finegoldii DSM 17565] Length = 232 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GCN +C +C DT I G G +++ Sbjct: 2 GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IAGKGGTPTPPEEI 44 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K G +GGEP Q VPL++ L ++G + +++NG I Sbjct: 45 VRMAMSQRPFFGKRGG-VTFSGGEPTFQAKALVPLVRELKEKGMHVCIDSNGGIW 98 >gi|83590292|ref|YP_430301.1| ribonucleoside-triphosphate reductase, anaerobic-like [Moorella thermoacetica ATCC 39073] gi|83573206|gb|ABC19758.1| Ribonucleoside-triphosphate reductase, anaerobic-like protein [Moorella thermoacetica ATCC 39073] Length = 234 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 32/141 (22%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 VF GCN +C +C + ++ + + ++ +L+ + + Sbjct: 24 TVF--LGGCNF-----------RCPWCHNADLVLRPSVLPEISPAEVLNLLIRRRSWVQA 70 Query: 84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 +TGGEP L ++ L RGF++ ++TNG+ D I + Sbjct: 71 ----VCITGGEPTLAPGLEEFVRTLKSRGFKVKLDTNGSQP-----DVIA---------R 112 Query: 143 IKGGQELKLVFPQVNVSPENY 163 + G L V V PE Y Sbjct: 113 LLAGDLLDYVAMDVKAPPEKY 133 >gi|296129568|ref|YP_003636818.1| pyruvate formate-lyase activating enzyme [Cellulomonas flavigena DSM 20109] gi|296021383|gb|ADG74619.1| pyruvate formate-lyase activating enzyme [Cellulomonas flavigena DSM 20109] Length = 293 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 28/130 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ +F SGC L +C +C DT +Q +G D+L I Sbjct: 71 RLTIF--LSGCPL-----------RCLYCHNPDT----MQMRRGTDVTADELLARIARYR 113 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130 G ++GGEPL+Q L++ +A++T+G T E + Sbjct: 114 GVFRATGGGVTISGGEPLMQPAFVRRLVRGAAAMDVPVAIDTSGYLGAHATDEMLDDVSL 173 Query: 131 ICVSPKAGCD 140 + + K+G Sbjct: 174 VLLDVKSGLP 183 >gi|160887576|ref|ZP_02068579.1| hypothetical protein BACOVA_05596 [Bacteroides ovatus ATCC 8483] gi|237722436|ref|ZP_04552917.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 2_2_4] gi|262407418|ref|ZP_06083966.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 2_1_22] gi|315919480|ref|ZP_07915720.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D2] gi|156107987|gb|EDO09732.1| hypothetical protein BACOVA_05596 [Bacteroides ovatus ATCC 8483] gi|229448246|gb|EEO54037.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 2_2_4] gi|262354226|gb|EEZ03318.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 2_1_22] gi|295087461|emb|CBK68984.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides xylanisolvens XB1A] gi|313693355|gb|EFS30190.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D2] Length = 232 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GCN +C +C DT I G G +++ Sbjct: 2 GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IAGKGGTPTPPEEI 44 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K G +GGEP Q VPL++ L ++G + +++NG I Sbjct: 45 VRMAMSQRPFFGKRGG-VTFSGGEPTFQAKALVPLVRELKEKGIHVCIDSNGGIW 98 >gi|253563344|ref|ZP_04840801.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 3_2_5] gi|251947120|gb|EES87402.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 3_2_5] Length = 241 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GCN +C +C DT I+ G + +++ Sbjct: 11 GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IEAKGGTATDPEEI 53 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K+G +GGEP Q +PL + L + G I ++TNG + Sbjct: 54 VRMAVSQKAFFGKKGG-ITFSGGEPTFQAKSLIPLFKRLKEAGIHICLDTNGGLW 107 >gi|217968079|ref|YP_002353585.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Dictyoglomus turgidum DSM 6724] gi|217337178|gb|ACK42971.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Dictyoglomus turgidum DSM 6724] Length = 228 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 36/167 (21%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G + +F GCN +C FC + Q KG +Y+ + + + I+ + Sbjct: 16 GIPSFVIF--TQGCNF-----------RCPFCHNPELISQRKKG-QYSEEFILEEIDRRR 61 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-------PPQGIDW 130 + V+TGGEP LQ D+P + L KR + ++TNG+ + +D+ Sbjct: 62 KL----IKGVVITGGEPTLQEDLPSFLFKLKKRRLLVKLDTNGSNPKMLVEIIKSKLLDY 117 Query: 131 ICVSPKAGCDLKIK--GGQE------LKLVFPQVNVSPENYIGFDFE 169 + + K K G E LK +F + + EN + F+ Sbjct: 118 VAMDFKTSIPKYHKAIGLSERETSKYLKNIFESLRILKENNVRFEIR 164 >gi|315656244|ref|ZP_07909135.1| pyruvate formate-lyase activating enzyme [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493246|gb|EFU82846.1| pyruvate formate-lyase activating enzyme [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 302 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 28/130 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ +F +GC L +C +C DT Q +G L D I Sbjct: 81 RLTIF--LAGCPL-----------RCVYCHNPDT----WQMREGTPILAKDLLDKIVRYK 123 Query: 79 ITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI------EPPQGIDW 130 + G +GGEP++Q L++ G ++T+G++ + + +D Sbjct: 124 AVYKATGGGVTFSGGEPMMQPRFLKKLLRDTKAEGIHTNIDTSGSLGFSFSDQELELLDL 183 Query: 131 ICVSPKAGCD 140 + + K+G Sbjct: 184 VMLDVKSGNP 193 >gi|315655831|ref|ZP_07908729.1| pyruvate formate-lyase activating enzyme [Mobiluncus curtisii ATCC 51333] gi|315489895|gb|EFU79522.1| pyruvate formate-lyase activating enzyme [Mobiluncus curtisii ATCC 51333] Length = 302 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 28/130 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ +F +GC L +C +C DT Q +G L D I Sbjct: 81 RLTIF--LAGCPL-----------RCVYCHNPDT----WQMREGTPILAKDLLDKIVRYK 123 Query: 79 ITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI------EPPQGIDW 130 + G +GGEP++Q L++ G ++T+G++ + + +D Sbjct: 124 AVYKATGGGVTFSGGEPMMQPRFLKKLLRDTKAEGIHTNIDTSGSLGFSFSDQELELLDL 183 Query: 131 ICVSPKAGCD 140 + + K+G Sbjct: 184 VMLDVKSGNP 193 >gi|158321707|ref|YP_001514214.1| glycyl-radical activating family protein [Alkaliphilus oremlandii OhILAs] gi|158141906|gb|ABW20218.1| glycyl-radical enzyme activating protein family [Alkaliphilus oremlandii OhILAs] Length = 248 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 23/110 (20%) Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI 74 GEG +F GC L +C +C + R V ++ DLI Sbjct: 23 GEGIRT---TIF--LGGCPL-----------RCSWCHNPESWNENPIH-RVTVKEVMDLI 65 Query: 75 EEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR----GFEIAVETNG 120 E I G +GGEP Q ++ L K G + A+ET+G Sbjct: 66 ERDAIFYRTSGGGITFSGGEPTRQ--GEFLKTLVKNAMFLGIDTAIETSG 113 >gi|265762770|ref|ZP_06091338.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 2_1_16] gi|263255378|gb|EEZ26724.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 2_1_16] gi|301162337|emb|CBW21882.1| putative pyruvate formate-lyase 1 activating enzyme [Bacteroides fragilis 638R] Length = 241 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GCN +C +C DT I+ G + +++ Sbjct: 11 GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IEAKGGTATDPEEI 53 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K+G +GGEP Q +PL + L + G I ++TNG + Sbjct: 54 VRMAVSQKAFFGKKGG-ITFSGGEPTFQAKSLIPLFKRLKEAGIHICLDTNGGLW 107 >gi|53712629|ref|YP_098621.1| pyruvate formate-lyase activating enzyme [Bacteroides fragilis YCH46] gi|52215494|dbj|BAD48087.1| pyruvate formate-lyase activating enzyme [Bacteroides fragilis YCH46] Length = 241 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 26/115 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GCN +C +C DT I+ G + +++ Sbjct: 11 GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IEAKGGTATDPEEI 53 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K+G +GGEP Q +PL + L ++G I ++TNG + Sbjct: 54 VRMAVSQKAFFGKKGG-ITFSGGEPTFQAKSLIPLFKRLKEKGIHICLDTNGGLW 107 >gi|60680840|ref|YP_210984.1| putative pyruvate formate-lyase 1 activating enzyme [Bacteroides fragilis NCTC 9343] gi|60492274|emb|CAH07039.1| putative pyruvate formate-lyase 1 activating enzyme [Bacteroides fragilis NCTC 9343] Length = 241 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 26/115 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GCN +C +C DT I+ G + +++ Sbjct: 11 GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IEAKGGTATDPEEI 53 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K+G +GGEP Q +PL + L ++G I ++TNG + Sbjct: 54 VRMAVSQKAFFGKKGG-ITFSGGEPTFQAKSLIPLFKRLKEKGIHICLDTNGGLW 107 >gi|284162386|ref|YP_003401009.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Archaeoglobus profundus DSM 5631] gi|284012383|gb|ADB58336.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Archaeoglobus profundus DSM 5631] Length = 234 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 29/120 (24%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF F GC +C +C ++ +G G +++A I E ++ Sbjct: 22 VF--FVGCPF-----------RCPYC-QNYRLFEG--GVEVTPEEIAKKIRENYLIEG-- 63 Query: 85 GRYCVLTGGEPLLQVDVP---LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPK 136 LTGGEPL+Q LI+ L + G + ++TNG +D++ + K Sbjct: 64 ---VCLTGGEPLVQNLDELTKLIELLKEYGLAVKLDTNGYYPEKLRNLVDRLDYVAMDFK 120 >gi|227500369|ref|ZP_03930431.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus tetradius ATCC 35098] gi|227217432|gb|EEI82751.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus tetradius ATCC 35098] Length = 239 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 22/105 (20%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77 G VF SGC L +C FC DT G ++++ D + Sbjct: 17 GIRTVFF-LSGCPL-----------RCVFCHNPDTQ----SPNYGRDITIEEIVDRAKRM 60 Query: 78 WITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 + G ++GGEP+ V LI AL+K + V+T+G Sbjct: 61 KPYYKNTGG-VTISGGEPMNDGKFLVDLIDALHKENIHVTVDTSG 104 >gi|189218652|ref|YP_001939293.1| Ribonucleotide reductase of class III (anaerobic), activating protein [Methylacidiphilum infernorum V4] gi|189185510|gb|ACD82695.1| Ribonucleotide reductase of class III (anaerobic), activating protein [Methylacidiphilum infernorum V4] Length = 232 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 25/124 (20%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +F GCN +C +C + + G + + + ++ + E Sbjct: 22 IF--TQGCNF-----------RCPYCYVPQLVVPENYGPLLPLAGVLEFLDSRKEKIEG- 67 Query: 85 GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSPK 136 V+TGGEP LQ D+ I + KRGF + ++TNG+ + ID++ + K Sbjct: 68 ---VVITGGEPTLQEDLQDFIILVKKRGFLVKLDTNGSHPEILERLIQKRLIDFVAMDFK 124 Query: 137 AGCD 140 A + Sbjct: 125 APLE 128 >gi|291543729|emb|CBL16838.1| pyruvate formate-lyase 1-activating enzyme [Ruminococcus sp. 18P13] Length = 241 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 24/108 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF SGC L +C +C DT + + Q+ + I + Sbjct: 24 VF--LSGCPL-----------RCLYCHNPDT----WEQKQTLCMTPPQVMEKIRSERSFL 66 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQG 127 + G L+GGEPL+Q L+ + GF A++T+G+I Q Sbjct: 67 LRGG--VTLSGGEPLMQPAFCEELLTLCRQEGFHTAIDTSGSIPLSQS 112 >gi|225163578|ref|ZP_03725887.1| Pyruvate-formate lyase-activating enzyme-like protein [Opitutaceae bacterium TAV2] gi|224801813|gb|EEG20100.1| Pyruvate-formate lyase-activating enzyme-like protein [Opitutaceae bacterium TAV2] Length = 220 Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 19/104 (18%) Query: 23 VAV-FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 AV F GCN +C +C ++ I ++ T Sbjct: 42 PAVVF--TQGCN-----------WRCPWC----HNTALVYPEQFTTPIPEADILQKLATR 84 Query: 82 EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124 + V++GGEP L D+P I+ + GF I ++TNG+ Sbjct: 85 RGKLDGVVISGGEPTLHPDLPDFIRRVRALGFLIKLDTNGSRPA 128 >gi|218130027|ref|ZP_03458831.1| hypothetical protein BACEGG_01610 [Bacteroides eggerthii DSM 20697] gi|217987747|gb|EEC54074.1| hypothetical protein BACEGG_01610 [Bacteroides eggerthii DSM 20697] Length = 246 Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 43/115 (37%), Gaps = 26/115 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GC +C +C DT I G D++ Sbjct: 16 GTFDGPGLRLVVF--LQGCPF-----------RCLYCANPDT----IDSKGGIPTPADEI 58 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K+G +GGEP LQ +PL + L G ++TNG I Sbjct: 59 LQMAVSQKAFFGKKGG-ITFSGGEPTLQAENLIPLFKELKANGIHTCLDTNGGIW 112 >gi|325970893|ref|YP_004247084.1| pyruvate formate-lyase activating enzyme [Spirochaeta sp. Buddy] gi|324026131|gb|ADY12890.1| pyruvate formate-lyase activating enzyme [Spirochaeta sp. Buddy] Length = 254 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 27/123 (21%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F TL G G R VF GC S +CR+C DT G Sbjct: 10 VESFGTLDGPGL---RYVVF--LQGC-----------SLRCRYCHNPDT----WNLNGGN 49 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121 + + L I K G ++GGEPL Q + L++ L + G A++T G+ Sbjct: 50 LSDSEDLVQEILGYRNFIAKGG--VTISGGEPLKQPQFALALLKRLKQEGLHTALDTAGS 107 Query: 122 IEP 124 + Sbjct: 108 VPL 110 >gi|317476758|ref|ZP_07936001.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides eggerthii 1_2_48FAA] gi|316906933|gb|EFV28644.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides eggerthii 1_2_48FAA] Length = 246 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 43/115 (37%), Gaps = 26/115 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GC +C +C DT I G D++ Sbjct: 16 GTFDGPGLRLVVF--LQGCPF-----------RCLYCANPDT----IDSKGGIPTPADEI 58 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K+G +GGEP LQ +PL + L G ++TNG I Sbjct: 59 LQMAVSQKAFFGKKGG-ITFSGGEPTLQAETLIPLFKELKANGIHTCLDTNGGIW 112 >gi|323705233|ref|ZP_08116809.1| pyruvate formate-lyase activating enzyme [Thermoanaerobacterium xylanolyticum LX-11] gi|323535659|gb|EGB25434.1| pyruvate formate-lyase activating enzyme [Thermoanaerobacterium xylanolyticum LX-11] Length = 242 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 22/107 (20%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC L +C +C DT + G + D++ + ++ Sbjct: 24 VFM--QGCPL-----------RCAYCHNPDT----WDYSCGKEVSTDEIFNDVKRYIPYM 66 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQ 126 + G LTGGEP LQ + L + L A++T+G ++ + Sbjct: 67 KASGGGVTLTGGEPTLQPEFCEDLFKKLKASFIHTALDTSGYVDIDK 113 >gi|189467295|ref|ZP_03016080.1| hypothetical protein BACINT_03682 [Bacteroides intestinalis DSM 17393] gi|189435559|gb|EDV04544.1| hypothetical protein BACINT_03682 [Bacteroides intestinalis DSM 17393] Length = 232 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 26/115 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GC +C +C DT I G +++ Sbjct: 2 GTFDGPGLRLVVF--LQGCPF-----------RCLYCANPDT----IDAKGGTPTPPEEI 44 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K+G +GGEP LQ +PL + L G I ++TNG I Sbjct: 45 LQMAISQKAFFGKKGG-ITFSGGEPTLQAEALIPLFKDLKANGIHICLDTNGGIW 98 >gi|225163391|ref|ZP_03725709.1| (Formate-C-acetyltransferase)-activating enzyme [Opitutaceae bacterium TAV2] gi|224801979|gb|EEG20257.1| (Formate-C-acetyltransferase)-activating enzyme [Opitutaceae bacterium TAV2] Length = 386 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 59/171 (34%), Gaps = 49/171 (28%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC++ +C +C DT + G ++D++ Q Sbjct: 27 VF--TQGCHM-----------RCVYCHNPDT----LDLAAGRLVSLDEILQRAIRQKPYY 69 Query: 82 EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139 G ++GGEP L +PL Q L+ G ++TNG I +D Sbjct: 70 GTRGG-VTISGGEPTLHRKTLLPLFQQLHANGIHTCLDTNGLI-----LD---------- 113 Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAIS 190 EL+ ++ + ++ + D Q T LA++ Sbjct: 114 -------DELRALYAETDLVLLDIKHIDDA----QHRRLTGTSNATPLAVA 153 >gi|297162459|gb|ADI12171.1| radical SAM domain-containing protein [Streptomyces bingchenggensis BCW-1] Length = 472 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 18/99 (18%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL +C +C + + G + ++ DL+++ + + R + Sbjct: 104 GCNL-----------RCPYC---YASSEKCLPGELSTEESLDLVDQ---AADMDVRQMIF 146 Query: 91 TGGEPLLQVDVPLIQA-LNKRGFEIAVETNGTIEPPQGI 128 TGGEP+L+ D+ L+ + RG + + TNGT+ I Sbjct: 147 TGGEPMLRKDLFLVASHARDRGLTVNMITNGTMIRTAEI 185 >gi|187251593|ref|YP_001876075.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Elusimicrobium minutum Pei191] gi|186971753|gb|ACC98738.1| Anaerobic ribonucleoside-triphosphate reductase activating protein [Elusimicrobium minutum Pei191] Length = 205 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 18/100 (18%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +F GCN+ +C +C + YN D++ +E++ + Sbjct: 22 IFM--QGCNM-----------RCPYCHNPELVYPNMLLEPYNEDEVFAFLEKRKGALDG- 67 Query: 85 GRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 V+TGGEP + D+P + + G+++ ++TNGT+ Sbjct: 68 ---VVVTGGEPAVHADLPEFLAKIKALGYKVKLDTNGTMP 104 >gi|290955630|ref|YP_003486812.1| oxidoreductase [Streptomyces scabiei 87.22] gi|260645156|emb|CBG68242.1| Putative oxidoreductase [Streptomyces scabiei 87.22] Length = 244 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 28/117 (23%) Query: 26 FCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 F +GC L +C +C DT + G VD++ IE+ Sbjct: 27 FV--AGCPL-----------RCLYCANPDTWHMR----DGKETTVDEVMAEIEKYRPFLT 69 Query: 83 KEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWI 131 G LTGGEPLLQ +++ + G A++T+G T E D + Sbjct: 70 TAGGGVTLTGGEPLLQSGFTGEILRRSKELGLHTALDTSGFLGVRATDELLDATDLV 126 >gi|110800676|ref|YP_695803.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens ATCC 13124] gi|110675323|gb|ABG84310.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens ATCC 13124] Length = 235 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 46/133 (34%), Gaps = 29/133 (21%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C FC DT KG Y ++L + I+ Sbjct: 20 IRFVVFMQGC-----------GIRCAFCHNPDT----WCKDKGTEYTPEELVNKIKRFKT 64 Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGT-----IEPPQGIDWIC 132 G +GGEPLLQ + L ++ K G ++T G E + +D I Sbjct: 65 YFNASGGGVTFSGGEPLLQPEFLLECLKLCKKEGIHTTLDTAGVGLGNYEEILEYVDLIL 124 Query: 133 VSPKAGCDLKIKG 145 K K K Sbjct: 125 FDVKETDPEKYKN 137 >gi|182626346|ref|ZP_02954101.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens D str. JGS1721] gi|177908365|gb|EDT70910.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens D str. JGS1721] Length = 235 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 46/133 (34%), Gaps = 29/133 (21%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C FC DT KG Y ++L + I+ Sbjct: 20 IRFVVFMQGC-----------GIRCAFCHNPDT----WCKDKGTEYTPEELVNKIKRFKT 64 Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGT-----IEPPQGIDWIC 132 G +GGEPLLQ + L ++ K G ++T G E + +D I Sbjct: 65 YFNASGGGVTFSGGEPLLQPEFLLECLKLCKKEGIHTTLDTAGVGLGNYEEILEYVDLIL 124 Query: 133 VSPKAGCDLKIKG 145 K K K Sbjct: 125 FDVKETDPEKYKN 137 >gi|160934052|ref|ZP_02081439.1| hypothetical protein CLOLEP_02915 [Clostridium leptum DSM 753] gi|156866725|gb|EDO60097.1| hypothetical protein CLOLEP_02915 [Clostridium leptum DSM 753] Length = 245 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 35/98 (35%), Gaps = 16/98 (16%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GC L +C FC T D D+++ + Sbjct: 31 LQGCPL-----------RCGFCHNPDTWQACTGKAVTPEDAFEDILKYKNFISSGG---V 76 Query: 89 VLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEP 124 L+GGEPLLQ + LI + G AV+T G+I Sbjct: 77 TLSGGEPLLQPEFCQALISLCHSAGIHCAVDTAGSIPL 114 >gi|110802629|ref|YP_698492.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens SM101] gi|168211839|ref|ZP_02637464.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens B str. ATCC 3626] gi|168218087|ref|ZP_02643712.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens NCTC 8239] gi|110683130|gb|ABG86500.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens SM101] gi|170710218|gb|EDT22400.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens B str. ATCC 3626] gi|182379907|gb|EDT77386.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens NCTC 8239] Length = 235 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 46/133 (34%), Gaps = 29/133 (21%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C FC DT KG Y ++L + I+ Sbjct: 20 IRFVVFMQGC-----------GIRCAFCHNPDT----WCKDKGTEYTPEELVNKIKRFKT 64 Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGT-----IEPPQGIDWIC 132 G +GGEPLLQ + L ++ K G ++T G E + +D I Sbjct: 65 YFNASGGGVTFSGGEPLLQPEFLLECLKLCKKEGIHTTLDTAGVGLGNYEEILEYVDLIL 124 Query: 133 VSPKAGCDLKIKG 145 K K K Sbjct: 125 FDVKETDPEKYKN 137 >gi|310659693|ref|YP_003937414.1| pyruvate formate lyase activating enzyme 1 [Clostridium sticklandii DSM 519] gi|308826471|emb|CBH22509.1| pyruvate formate lyase activating enzyme 1 [Clostridium sticklandii] Length = 252 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 21/105 (20%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77 G +F GC L +C +C D+ + Q + +++ + Sbjct: 18 GIRTIFF-LQGCPL-----------RCAYCHNPDSQNMFSQ----KHISPEEVLKTASKY 61 Query: 78 WITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 + G +GGEPLLQ V ++ L + GF A++T+G Sbjct: 62 KAYYNRTGGGVTFSGGEPLLQGEFLVETLKLLKENGFNTAIDTSG 106 >gi|168207460|ref|ZP_02633465.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens E str. JGS1987] gi|170661174|gb|EDT13857.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens E str. JGS1987] Length = 235 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 46/133 (34%), Gaps = 29/133 (21%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C FC DT KG Y ++L + I+ Sbjct: 20 IRFVVFMQGC-----------GIRCAFCHNPDT----WCKDKGTEYTPEELVNKIKRFKT 64 Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGT-----IEPPQGIDWIC 132 G +GGEPLLQ + L ++ K G ++T G E + +D I Sbjct: 65 YFNASGGGVTFSGGEPLLQPEFLLECLKLCKKEGIHTTLDTAGVGLGNYEEILEYVDLIL 124 Query: 133 VSPKAGCDLKIKG 145 K K K Sbjct: 125 FDVKETDPEKYKN 137 >gi|188589411|ref|YP_001921719.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum E3 str. Alaska E43] gi|188499692|gb|ACD52828.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum E3 str. Alaska E43] Length = 236 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC S +C++C DT G Y + L IE Sbjct: 24 VF--FQGC-----------SLRCKYCHNPDT----WTYDGGEEYTPEDLVKKIERYKTYF 66 Query: 82 EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120 E +GGEPL Q + L ++ +RG ++T+G Sbjct: 67 ESSNGGVTFSGGEPLRQPEFLLEVLKLCKERGINTCLDTSG 107 >gi|187935671|ref|YP_001886761.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum B str. Eklund 17B] gi|187723824|gb|ACD25045.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum B str. Eklund 17B] Length = 236 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC S +C++C DT G Y ++L IE Sbjct: 24 VF--FQGC-----------SLRCKYCHNPDT----WTYDGGDEYTPEELVKKIERYKTYF 66 Query: 82 EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120 + +GGEPL Q + L ++ ++G ++T+G Sbjct: 67 KSSNGGVTFSGGEPLRQPEFLLEVLKLCKEKGIHTCLDTSG 107 >gi|149134307|ref|YP_001293879.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens str. 13] gi|18144815|dbj|BAB80860.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens str. 13] Length = 235 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 46/133 (34%), Gaps = 29/133 (21%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C FC DT KG Y ++L + I+ Sbjct: 20 IRFVVFMQGC-----------GIRCAFCHNPDT----WCKDKGTEYTPEELVNKIKRFKT 64 Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGT-----IEPPQGIDWIC 132 G +GGEPLLQ + L ++ K G ++T G E + +D I Sbjct: 65 YFNASGGGVTFSGGEPLLQPEFLLECLKLCKKEGIHTTLDTAGVGLGNYEEILEYVDLIL 124 Query: 133 VSPKAGCDLKIKG 145 K K K Sbjct: 125 FDVKETDPEKYKS 137 >gi|289192125|ref|YP_003458066.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22] gi|288938575|gb|ADC69330.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22] Length = 229 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 23/124 (18%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCN +C++C + +Y V+++ D I E + ++ Sbjct: 18 GCNF-----------KCKYC-----FFKPLACKKYKVEEILDKILE--VNMSYGLNKILI 59 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEP LQ D+ L + L GF + + TNG +D + V + +K E Sbjct: 60 AGGEPTLQKDLVELTKLLKDEGFYLMLSTNG-YYLKDMLDKLEVD---EIHIDMKAYDEN 115 Query: 150 KLVF 153 K ++ Sbjct: 116 KHIY 119 >gi|29350145|ref|NP_813648.1| pyruvate formate-lyase activating enzyme [Bacteroides thetaiotaomicron VPI-5482] gi|29342057|gb|AAO79842.1| pyruvate formate-lyase activating enzyme [Bacteroides thetaiotaomicron VPI-5482] Length = 242 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GCN +C +C DT I G G +++ Sbjct: 12 GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IAGKGGTPTPPEEI 54 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K G +GGEP Q VPL++ L +RG + +++NG + Sbjct: 55 VRMAMSQRPFFGKRGG-ITFSGGEPTFQAKALVPLVRELKERGIHVCLDSNGGLW 108 >gi|85859089|ref|YP_461291.1| pyruvate formate-lyase activating enzyme [Syntrophus aciditrophicus SB] gi|85722180|gb|ABC77123.1| pyruvate formate-lyase activating enzyme [Syntrophus aciditrophicus SB] Length = 251 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 18/101 (17%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VFC GCN +C +C + Y I Sbjct: 41 VFC--QGCNF-----------RCSYC----HNPELVNPVLYTECNPEAEILSFLEKRVGR 83 Query: 85 GRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124 +TGGEP +Q D+P + L RG+ + ++TNG++ Sbjct: 84 LDAVTVTGGEPTIQKDLPSFLAWLKCRGYLVKLDTNGSMPV 124 >gi|251779583|ref|ZP_04822503.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083898|gb|EES49788.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 236 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC S +C++C DT G Y + L IE Sbjct: 24 VF--FQGC-----------SLRCKYCHNPDT----WTYDGGEEYTPEDLVKKIERYKTYF 66 Query: 82 EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120 E +GGEPL Q + L ++ +RG ++T+G Sbjct: 67 ESSNGGVTFSGGEPLRQPEFLLEVLKLCKERGINTCLDTSG 107 >gi|15669828|ref|NP_248642.1| coenzyme PQQ synthesis protein PqqE [Methanocaldococcus jannaschii DSM 2661] gi|41018449|sp|Q59026|Y1632_METJA RecName: Full=Uncharacterized protein MJ1632 gi|1592222|gb|AAB99653.1| coenzyme PQQ synthesis protein (pqqE) [Methanocaldococcus jannaschii DSM 2661] Length = 255 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 23/124 (18%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCN +C++C + +Y+VD++ + I E + + ++ Sbjct: 44 GCNF-----------KCKYC-----FFKPLSCKKYSVDEILNKILE--VNENYKLDKILI 85 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEP LQ D+ L + L GF + + TNG +D + V + +K E Sbjct: 86 AGGEPTLQNDLSELTKLLKDEGFYLMLSTNG-YYLKDMLDKLEVD---EIHIDLKAYDEN 141 Query: 150 KLVF 153 K ++ Sbjct: 142 KHIY 145 >gi|297155243|gb|ADI04955.1| radical SAM family protein [Streptomyces bingchenggensis BCW-1] Length = 170 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 13/92 (14%) Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGI 128 AD++E G V++GGEPL Q P+I+AL + G + +ETNGT+ P + Sbjct: 4 ADVVERLLAFGVG---LIVISGGEPLNQQSRLEPVIRALREAGIAVEIETNGTVAPQAAL 60 Query: 129 DW----ICVSPKAGCDLKIKGGQELKLVFPQV 156 VSPK L G E + + P+V Sbjct: 61 AAAGIRFNVSPK----LAHSGIAEKRRIVPEV 88 >gi|269976907|ref|ZP_06183881.1| pyruvate formate-lyase 1-activating enzyme [Mobiluncus mulieris 28-1] gi|307701157|ref|ZP_07638179.1| pyruvate formate-lyase 1-activating enzyme [Mobiluncus mulieris FB024-16] gi|269934738|gb|EEZ91298.1| pyruvate formate-lyase 1-activating enzyme [Mobiluncus mulieris 28-1] gi|307613551|gb|EFN92798.1| pyruvate formate-lyase 1-activating enzyme [Mobiluncus mulieris FB024-16] Length = 263 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 28/130 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF +GC L +C +C DT +Q +G D L D I Sbjct: 42 RLTVF--LAGCPL-----------RCVYCHNPDT----LQMREGTPVLADDLLDKILRYK 84 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130 + G +GGEP++Q L++ G ++T+G + + + +D Sbjct: 85 AVYQATGGGVTFSGGEPMMQPMFLKRLLRGAKANGVHTNIDTSGFLGANFSDQDLELLDM 144 Query: 131 ICVSPKAGCD 140 + + K+G Sbjct: 145 VMLDVKSGNP 154 >gi|168214980|ref|ZP_02640605.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens CPE str. F4969] gi|170713601|gb|EDT25783.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens CPE str. F4969] Length = 235 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 46/133 (34%), Gaps = 29/133 (21%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C FC DT KG Y ++L + I+ Sbjct: 20 IRFVVFMQGC-----------GIRCAFCHNPDT----WCKDKGTEYTPEELVNKIKRFKT 64 Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGT-----IEPPQGIDWIC 132 G +GGEPLLQ + L ++ K G ++T G E + +D I Sbjct: 65 YFNASGGGVTFSGGEPLLQPEFLLECLKLCKKEGIHTTLDTAGVGLGNYEEILEYVDLIL 124 Query: 133 VSPKAGCDLKIKG 145 K K K Sbjct: 125 FDVKEIDPEKYKN 137 >gi|281358833|ref|ZP_06245305.1| pyruvate formate-lyase activating enzyme [Victivallis vadensis ATCC BAA-548] gi|281314701|gb|EFA98742.1| pyruvate formate-lyase activating enzyme [Victivallis vadensis ATCC BAA-548] Length = 237 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 29/123 (23%) Query: 8 EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F TL G G VF GC L +CR+C DT + G Sbjct: 12 ESFGTLDGPGVRFV----VF--LQGCPL-----------RCRYCHNPDT----WELGGGM 50 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGT 121 + ++ IE L+GGEPL+Q + +++ + GF A++T G+ Sbjct: 51 EISSAEVVGKIES--CRNFIRSGGVTLSGGEPLMQPEFARDILERCARAGFHTALDTAGS 108 Query: 122 IEP 124 + Sbjct: 109 VPL 111 >gi|332180934|gb|AEE16622.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Treponema brennaborense DSM 12168] Length = 252 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 28/129 (21%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 A+F GCNL +C +C +T+ V + Q+ +E++ Sbjct: 24 AALF--LGGCNL-----------RCPYCYNTELVTGNALPEDAVSASQVLAHLEKRKNVL 70 Query: 82 EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE---------PPQGIDWI 131 V++GGEPLL LI G++I ++TNGT+ P D++ Sbjct: 71 TGF----VISGGEPLLSPVTEYLITQARALGYKIKLDTNGTLPERLSHLLQSPALCPDFV 126 Query: 132 CVSPKAGCD 140 + K + Sbjct: 127 ALDVKTSPE 135 >gi|330995626|ref|ZP_08319526.1| pyruvate formate-lyase 1-activating enzyme [Paraprevotella xylaniphila YIT 11841] gi|329575032|gb|EGG56585.1| pyruvate formate-lyase 1-activating enzyme [Paraprevotella xylaniphila YIT 11841] Length = 243 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 46/124 (37%), Gaps = 33/124 (26%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F T+ G G RF GC L +C +C DT G Sbjct: 13 ESFGTVDGPG---------IRFVTFLQGCPL-----------RCLYCHNPDTWDAGRPAR 52 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 + ++L + + + G LTGGEPLLQ D + + G A++T Sbjct: 53 Y--QMAPEELLAEVLKVRSFIARGG--VTLTGGEPLLQADFCREFFRLCREEGLHTALDT 108 Query: 119 NGTI 122 +G + Sbjct: 109 SGAV 112 >gi|153807860|ref|ZP_01960528.1| hypothetical protein BACCAC_02144 [Bacteroides caccae ATCC 43185] gi|149129469|gb|EDM20683.1| hypothetical protein BACCAC_02144 [Bacteroides caccae ATCC 43185] Length = 232 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GCN +C +C DT I G G +++ Sbjct: 2 GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IAGKGGTPTPPEEI 44 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K G +GGEP Q VPL++ L ++G + +++NG + Sbjct: 45 IRMAMSQRPFFGKRGG-ITFSGGEPTFQAKALVPLVRELKEKGIHVCIDSNGGLW 98 >gi|227876187|ref|ZP_03994303.1| [formate-C-acetyltransferase]-activating enzyme [Mobiluncus mulieris ATCC 35243] gi|306819463|ref|ZP_07453170.1| pyruvate formate-lyase activating enzyme [Mobiluncus mulieris ATCC 35239] gi|227843148|gb|EEJ53341.1| [formate-C-acetyltransferase]-activating enzyme [Mobiluncus mulieris ATCC 35243] gi|304647755|gb|EFM45073.1| pyruvate formate-lyase activating enzyme [Mobiluncus mulieris ATCC 35239] Length = 302 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 28/130 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF +GC L +C +C DT +Q +G D L D I Sbjct: 81 RLTVF--LAGCPL-----------RCVYCHNPDT----LQMREGTPVLADDLLDKILRYK 123 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130 + G +GGEP++Q L++ G ++T+G + + + +D Sbjct: 124 AVYQATGGGVTFSGGEPMMQPMFLKRLLRGAKANGVHTNIDTSGFLGANFSDQDLELLDM 183 Query: 131 ICVSPKAGCD 140 + + K+G Sbjct: 184 VMLDVKSGNP 193 >gi|329954696|ref|ZP_08295756.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides clarus YIT 12056] gi|328527237|gb|EGF54241.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides clarus YIT 12056] Length = 232 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 26/115 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GC +C +C DT I G +++ Sbjct: 2 GTFDGPGLRLVVF--LQGCPF-----------RCLYCANPDT----IDAKGGTPTPANEI 44 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K+G +GGEP LQ +PL + L G I ++TNG I Sbjct: 45 LQMAISQKAFFGKKGG-ITFSGGEPTLQAEALIPLFRDLKANGIHICLDTNGGIW 98 >gi|227542034|ref|ZP_03972083.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium glucuronolyticum ATCC 51866] gi|227182182|gb|EEI63154.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium glucuronolyticum ATCC 51866] Length = 289 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 26/128 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 SGC L +C +C DT + +G +V+ + I+ G Sbjct: 72 LSGCPL-----------RCVYCHNPDT----MDMKEGTLEDVEAIIKKIKRYRPVFNASG 116 Query: 86 RYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDWICVSPKA 137 ++GGEPL Q+ +++A++ G A++T+G T ID + K+ Sbjct: 117 GGLTISGGEPLFQIAFTRRILEAVHAAGIHTAIDTSGFLGARLTDNDIANIDLFLLDVKS 176 Query: 138 GCDLKIKG 145 G K Sbjct: 177 GFPDTYKR 184 >gi|227488973|ref|ZP_03919289.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium glucuronolyticum ATCC 51867] gi|227091049|gb|EEI26361.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium glucuronolyticum ATCC 51867] Length = 268 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 26/128 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 SGC L +C +C DT + +G +V+ + I+ G Sbjct: 51 LSGCPL-----------RCVYCHNPDT----MDMKEGTLEDVEAIIKKIKRYRPVFNASG 95 Query: 86 RYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDWICVSPKA 137 ++GGEPL Q+ +++A++ G A++T+G T ID + K+ Sbjct: 96 GGLTISGGEPLFQIAFTRRILEAVHAAGIHTAIDTSGFLGARLTDNDIANIDLFLLDVKS 155 Query: 138 GCDLKIKG 145 G K Sbjct: 156 GFPDTYKR 163 >gi|256811264|ref|YP_003128633.1| Radical SAM domain protein [Methanocaldococcus fervens AG86] gi|256794464|gb|ACV25133.1| Radical SAM domain protein [Methanocaldococcus fervens AG86] Length = 229 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 23/124 (18%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCN +C++C + Y+V++L + I E + ++ Sbjct: 18 GCNF-----------KCKYC-----FFKPLSCKNYSVEELLNKILE--VNENYNINKILI 59 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEP LQ D+P L L GF I + TNG +D + V + +K E Sbjct: 60 AGGEPTLQKDLPKLTNILKDEGFYIMLSTNG-YYLKDMVDKLEVD---EIHIDLKAYTEK 115 Query: 150 KLVF 153 K ++ Sbjct: 116 KHIY 119 >gi|325265165|ref|ZP_08131891.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium sp. D5] gi|324029569|gb|EGB90858.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium sp. D5] Length = 231 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 18/99 (18%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F +GCN +C FC + +++ ++++ + Sbjct: 21 TIF--TAGCNF-----------RCPFCHNASLVTHVDVNNNIPEEEVFSFLKKRKGVLDG 67 Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 +TGGEPLLQ D+ I+A+ G+ + ++TNG+ Sbjct: 68 ----VCITGGEPLLQPDIEDFIRAVKALGYAVKLDTNGS 102 >gi|254417247|ref|ZP_05030991.1| pyruvate formate-lyase 1-activating enzyme [Microcoleus chthonoplastes PCC 7420] gi|196175900|gb|EDX70920.1| pyruvate formate-lyase 1-activating enzyme [Microcoleus chthonoplastes PCC 7420] Length = 257 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 47/135 (34%), Gaps = 35/135 (25%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C +C D+ + +G VD+L I + Sbjct: 35 IRFVIFTQGCPL-----------RCLYCHNPDSRCIR----EGQEVTVDELMTQIPKYRS 79 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWI 131 G +TGGEPL+Q + + + +G A++T+G +D + Sbjct: 80 YMRFSGGGVTITGGEPLMQPEFVREIFRRCQDQGIHTALDTSGYVNLDVAKPVLDHVDLV 139 Query: 132 -----CVSPKAGCDL 141 PK + Sbjct: 140 LLDIKSFDPKIYFKI 154 >gi|169342629|ref|ZP_02863673.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens C str. JGS1495] gi|169299271|gb|EDS81340.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens C str. JGS1495] Length = 235 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 45/133 (33%), Gaps = 29/133 (21%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C FC DT KG Y ++L + I Sbjct: 20 IRFVVFMQGC-----------GIRCAFCHNPDT----WCKDKGTEYTPEELVNKITRFKT 64 Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGT-----IEPPQGIDWIC 132 G +GGEPLLQ + L ++ K G ++T G E + +D I Sbjct: 65 YFNASGGGVTFSGGEPLLQPEFLLECLKLCKKEGIHTTLDTAGVGLGNYEEILEYVDLIL 124 Query: 133 VSPKAGCDLKIKG 145 K K K Sbjct: 125 FDVKEIDPEKYKN 137 >gi|320527904|ref|ZP_08029071.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Solobacterium moorei F0204] gi|320131700|gb|EFW24263.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Solobacterium moorei F0204] Length = 383 Score = 58.1 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 16/94 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 +GCN+ +C FC+ + K +++ + ++ + Sbjct: 172 TAGCNM-----------KCPFCNQKDLVFIPEKYRYIAPEEILSYLNQRSGLLDG----V 216 Query: 89 VLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGT 121 V++GGEPLLQ +P I+ + + G+ + ++TNGT Sbjct: 217 VISGGEPLLQEELIPFIRQIKELGYAVKLDTNGT 250 >gi|223986638|ref|ZP_03636631.1| hypothetical protein HOLDEFILI_03953 [Holdemania filiformis DSM 12042] gi|223961386|gb|EEF65905.1| hypothetical protein HOLDEFILI_03953 [Holdemania filiformis DSM 12042] Length = 143 Score = 58.1 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 27/125 (21%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64 E F T+ G G R+ VF GC + +CR+C DT + G Sbjct: 10 ESFGTVDGPGV---RLVVFV--QGCPM-----------RCRYCHNPDT----WRSEGGQT 49 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 + ++ + G ++GGEPL Q+ L A + G ++T+G + Sbjct: 50 MSAAEILQTYKRN--EAFYRGGGITVSGGEPLGQLKFVTELFAAAKQAGIHTCLDTSGIL 107 Query: 123 EPPQG 127 P Sbjct: 108 FDPSH 112 >gi|150391318|ref|YP_001321367.1| radical SAM domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149951180|gb|ABR49708.1| Radical SAM domain protein [Alkaliphilus metalliredigens QYMF] Length = 242 Score = 57.7 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 27/147 (18%) Query: 3 LYSIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGI 57 + EI F + G G ++F GCNL C +C +T + Sbjct: 7 TLPVNEIIPFSNVDGRGNRT---SIFV--QGCNL-----------NCVYCHNPETIKLPC 50 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIA 115 + T+ Y + +L +I++ R ++GGE L L + K G Sbjct: 51 EETQETNYTIKELLSIIKKYGP----YIRGITVSGGEATLYSTYLTQLFGEVKKLGLTCY 106 Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLK 142 ++TNG + I ++ K D+K Sbjct: 107 IDTNGLFNLEKMEALIPITDKFLFDIK 133 >gi|253571676|ref|ZP_04849082.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 1_1_6] gi|251838884|gb|EES66969.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 1_1_6] Length = 232 Score = 57.7 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GCN +C +C DT I G G +++ Sbjct: 2 GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IAGKGGTPTPPEEI 44 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K G +GGEP Q VPL++ L ++G + +++NG + Sbjct: 45 VRMAMSQRPFFGKRGG-ITFSGGEPTFQAKALVPLVRELKEKGIHVCLDSNGGLW 98 >gi|295089884|emb|CBK75991.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium cf. saccharolyticum K10] Length = 231 Score = 57.7 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 32/126 (25%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 +F F GCN +C FC D + G ++ + + ++++ Sbjct: 21 TIF--FGGCNF-----------RCPFCHNGD----LVNGPWEDPFDPEDVLAFLKKRSGL 63 Query: 81 GEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQG-------IDWIC 132 E +TGGEP LQ D+ LI ++ G + ++TNG ID++ Sbjct: 64 LEG----VCITGGEPTLQPDLEKLIHSIRSLGLSVKLDTNGYRPDVLKDLCRRGLIDYVA 119 Query: 133 VSPKAG 138 + KAG Sbjct: 120 MDIKAG 125 >gi|331269973|ref|YP_004396465.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum BKT015925] gi|329126523|gb|AEB76468.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum BKT015925] Length = 239 Score = 57.7 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 23/101 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC L +C FC DT G + + L I Sbjct: 28 VF--FQGCPL-----------RCSFCHNPDT----WDFNGGYEISPEDLVKKIIRFKPYF 70 Query: 82 EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120 + G +GGEPL+Q L ++ + A++T+G Sbjct: 71 KNNGG-VTFSGGEPLMQPKFLLEALKLCKENNIHTAIDTSG 110 >gi|298384455|ref|ZP_06994015.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 1_1_14] gi|298262734|gb|EFI05598.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 1_1_14] Length = 232 Score = 57.7 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GCN +C +C DT I G G +++ Sbjct: 2 GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IAGKGGTPTPPEEI 44 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K G +GGEP Q VPL++ L ++G + +++NG + Sbjct: 45 VRMAMSQRPFFGKRGG-ITFSGGEPTFQAKALVPLVRELKEKGIHVCLDSNGGLW 98 >gi|260892784|ref|YP_003238881.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Ammonifex degensii KC4] gi|260864925|gb|ACX52031.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Ammonifex degensii KC4] Length = 208 Score = 57.7 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 20/106 (18%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G+ A VF R GCN +C +C RY + + Sbjct: 16 GKPAAVVFTR--GCNF-----------RCPWC----HNPGLVDPARYVPEVPLGEVLGFL 58 Query: 79 ITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123 K V++GGEP +Q VP ++AL G+ + ++TNG+ Sbjct: 59 ERRRKYLDAVVVSGGEPTVQGDLVPFLRALKGMGYLVKLDTNGSNP 104 >gi|237749263|ref|ZP_04579743.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes OXCC13] gi|229380625|gb|EEO30716.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes OXCC13] Length = 227 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 30/139 (21%) Query: 10 FLTLQGEGGHAGRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 F T+ GR+A +FC GC +CR+C + G G +Y+ Sbjct: 17 FTTID----FPGRLAAVIFC--QGCP-----------WRCRYCHNRHLLESGEAG-QYSW 58 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE--- 123 + +E + + V +GGEPLLQ +P I +++ GFE+A+ T+G Sbjct: 59 NDTFRWLETRRGLLDG----VVFSGGEPLLQKQLPEAIGQIHQNGFEVALHTSGVYPERL 114 Query: 124 --PPQGIDWICVSPKAGCD 140 I+W+ + KA D Sbjct: 115 SKVLPLIEWVGLDIKAPFD 133 >gi|317128688|ref|YP_004094970.1| (formate-C-acetyltransferase)-activating enzyme [Bacillus cellulosilyticus DSM 2522] gi|315473636|gb|ADU30239.1| (Formate-C-acetyltransferase)-activating enzyme [Bacillus cellulosilyticus DSM 2522] Length = 245 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 22/166 (13%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 GC L C+FC DT G + + ++I + Sbjct: 25 LQGCPLM-----------CQFCNNPDTWHKRSGLYIGSKLM---INEIINYTPYMRTIKN 70 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143 V++GGEPL+Q + L++ K G + + T+G++ P + I V+ ++K Sbjct: 71 SGVVISGGEPLMQPEFTYALLKQCKKLGLKTTLITSGSLIPNNINEIIDVTDLVILNIKH 130 Query: 144 KGGQELKLVFPQVN---VSPENYIGFDFERFSLQPMDGPFLEENTN 186 QE L+ N + Y+ + + L+ + P + N Sbjct: 131 MNEQEHILLTGHSNRNTIKLAKYLHSESKEMWLRHILLPSVTNNVA 176 >gi|229918072|ref|YP_002886718.1| pyruvate formate-lyase activating enzyme [Exiguobacterium sp. AT1b] gi|229469501|gb|ACQ71273.1| pyruvate formate-lyase activating enzyme [Exiguobacterium sp. AT1b] Length = 238 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 29/134 (21%) Query: 1 MKLYSI--KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDF 54 M + + E F T+ G G VF GC + +C +C DT Sbjct: 1 MTMGYVHSVESFGTVDGPGIRFI----VF--LQGC-----------ALRCLYCHNADT-- 41 Query: 55 VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGF 112 K + + + E ++GG+PL Q L++ K G Sbjct: 42 --WDFKKNNHRSAEDVIQEALSYRPFMEASKGGITISGGDPLAQPEFLEALLREAKKHGL 99 Query: 113 EIAVETNGTIEPPQ 126 ++T+G + PP Sbjct: 100 HTTLDTSGALRPPN 113 >gi|167748358|ref|ZP_02420485.1| hypothetical protein ANACAC_03102 [Anaerostipes caccae DSM 14662] gi|317472105|ref|ZP_07931437.1| pyruvate formate-lyase 1-activating enzyme [Anaerostipes sp. 3_2_56FAA] gi|167652350|gb|EDR96479.1| hypothetical protein ANACAC_03102 [Anaerostipes caccae DSM 14662] gi|316900509|gb|EFV22491.1| pyruvate formate-lyase 1-activating enzyme [Anaerostipes sp. 3_2_56FAA] Length = 241 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 23/104 (22%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R VF F GC + +C+FC DT + G + L I Sbjct: 21 RSVVF--FQGC-----------ALRCKFCHNPDT----WEFQGGEEMTPEALVKRISRFK 63 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120 K+ +GGEPL+Q + L ++ + G ++T G Sbjct: 64 PY-FKQNGGVTFSGGEPLMQPEFLLKTLKLCKQEGIHTCIDTAG 106 >gi|257452751|ref|ZP_05618050.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 3_1_5R] gi|257466612|ref|ZP_05630923.1| pyruvate formate-lyase activating enzyme [Fusobacterium gonidiaformans ATCC 25563] gi|315917767|ref|ZP_07914007.1| pyruvate formate-lyase activating enzyme [Fusobacterium gonidiaformans ATCC 25563] gi|317059292|ref|ZP_07923777.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 3_1_5R] gi|313684968|gb|EFS21803.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 3_1_5R] gi|313691642|gb|EFS28477.1| pyruvate formate-lyase activating enzyme [Fusobacterium gonidiaformans ATCC 25563] Length = 241 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 59/180 (32%), Gaps = 54/180 (30%) Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDF 54 MK Y I E F T G G RF GC L +CR+C Sbjct: 1 MKAY-INSFESFGTKDGPG---------IRFVLFLQGCPL-----------RCRYCHNVD 39 Query: 55 VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGF 112 Y +++ + + + ++GGEPLLQ D Q +K G Sbjct: 40 AWNLQHPNYIYTSEEILEEVNRVKVFLTGG---ITISGGEPLLQADFVKEFFQLCHKNGI 96 Query: 113 EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 A++T+G +++K V + ++ + D E++ Sbjct: 97 HTALDTSG----------------------YIFTEKVKEVLEETDLVLLDLKHIDSEKYY 134 >gi|189347395|ref|YP_001943924.1| Radical SAM domain protein [Chlorobium limicola DSM 245] gi|189341542|gb|ACD90945.1| Radical SAM domain protein [Chlorobium limicola DSM 245] Length = 364 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 14/98 (14%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL C + D + G +G + + +I E G R L Sbjct: 22 GCNLKC--------RHC-WIDPKYQG-EGEQHPSLDPSLFRKIIREAIPLGLTSVR---L 68 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127 TGGEPLL + L+ + + G +++VETNG + PQ Sbjct: 69 TGGEPLLHPAIGELLDCIGENGLQLSVETNGLLCSPQT 106 >gi|160946256|ref|ZP_02093467.1| hypothetical protein PEPMIC_00218 [Parvimonas micra ATCC 33270] gi|158447779|gb|EDP24774.1| hypothetical protein PEPMIC_00218 [Parvimonas micra ATCC 33270] Length = 242 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 22/105 (20%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77 G +F GC L +C +C DT + G D + E+ Sbjct: 19 GIRTIFF-LQGCPL-----------RCLYCHNPDTQALQ----GGTEITPDFVLSK-AER 61 Query: 78 WITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 + T ++ +GGEPLLQ ++ L + G+ ++T+G Sbjct: 62 YKTYYRDNGGVTFSGGEPLLQGEFLAETLKLLKENGYNTCIDTSG 106 >gi|160892066|ref|ZP_02073069.1| hypothetical protein BACUNI_04527 [Bacteroides uniformis ATCC 8492] gi|270296322|ref|ZP_06202522.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. D20] gi|317480485|ref|ZP_07939578.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 4_1_36] gi|156858544|gb|EDO51975.1| hypothetical protein BACUNI_04527 [Bacteroides uniformis ATCC 8492] gi|270273726|gb|EFA19588.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. D20] gi|316903330|gb|EFV25191.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 4_1_36] Length = 241 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 26/115 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GC +C +C DT I G +++ Sbjct: 11 GTFDGPGLRLVVF--LQGCPF-----------RCLYCANPDT----IDVKGGTPTTPEEI 53 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K+G +GGEP LQ +PL + L G I +++NG I Sbjct: 54 LQMAISQKAFFGKKGG-ITFSGGEPTLQAEALIPLFKELKANGIHICLDSNGGIW 107 >gi|154151136|ref|YP_001404754.1| radical SAM domain-containing protein [Candidatus Methanoregula boonei 6A8] gi|153999688|gb|ABS56111.1| Radical SAM domain protein [Methanoregula boonei 6A8] Length = 270 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 24/110 (21%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 VF R GC L +C +C + + D++ DLI+ I Sbjct: 30 TVFFR--GCPL-----------RCSYCQNAAILAGE---DLRDTDEIIDLIQGSKIAASG 73 Query: 84 EGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTIEPPQGIDWI 131 V +GGEP +Q D L+ +A K G + ++TNG P ID + Sbjct: 74 ----VVFSGGEPTMQKDALLVLARAAKKFGLAVGIQTNGLF--PDTIDVL 117 >gi|283796877|ref|ZP_06346030.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium sp. M62/1] gi|291075285|gb|EFE12649.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium sp. M62/1] Length = 231 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 32/126 (25%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 +F GCN +C FC D + G ++ + + ++++ Sbjct: 21 TIF--LGGCNF-----------RCPFCHNGD----LVNGPWEDPFDPEDVLAFLKKRSGL 63 Query: 81 GEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQG-------IDWIC 132 E +TGGEP LQ D+ LI ++ G + ++TNG ID++ Sbjct: 64 LEG----VCITGGEPTLQPDLEKLIHSIRSLGLSVKLDTNGYRPDVLKDLCRRGLIDYVA 119 Query: 133 VSPKAG 138 + KAG Sbjct: 120 MDIKAG 125 >gi|297571030|ref|YP_003696804.1| pyruvate formate-lyase activating enzyme [Arcanobacterium haemolyticum DSM 20595] gi|296931377|gb|ADH92185.1| pyruvate formate-lyase activating enzyme [Arcanobacterium haemolyticum DSM 20595] Length = 308 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 28/135 (20%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ F F+GC L +C +C DT ++ +G + + I Sbjct: 86 RLTTF--FAGCPL-----------RCLYCHNPDT----LKMKEGTAVRATDMLEKIARYK 128 Query: 79 ITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG------TIEPPQGIDW 130 +GGEP++Q L+ + G AV+T+G T E +D Sbjct: 129 AVFTVSKGGVTFSGGEPMMQPKFLARLLAGCKEIGIHTAVDTSGFLGVNMTEEMLANVDL 188 Query: 131 ICVSPKAGCDLKIKG 145 + K+G + K Sbjct: 189 FLLDVKSGVPEQYKR 203 >gi|150015896|ref|YP_001308150.1| pyruvate formate-lyase activating enzyme [Clostridium beijerinckii NCIMB 8052] gi|149902361|gb|ABR33194.1| pyruvate formate-lyase activating enzyme [Clostridium beijerinckii NCIMB 8052] Length = 241 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC + +C++C DT G Y +QL + IE Sbjct: 24 VF--LQGC-----------ALRCKYCHNPDT----WATNGGEEYTPEQLVNKIERFKTYF 66 Query: 82 EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120 G +GGEPL Q + L ++ +G ++T G Sbjct: 67 ASSGGGVTFSGGEPLRQPEFLLETLKLCKSKGINTCIDTAG 107 >gi|330508293|ref|YP_004384721.1| putative molybdenum cofactor biosynthesis protein A [Methanosaeta concilii GP-6] gi|328929101|gb|AEB68903.1| probable molybdenum cofactor biosynthesis protein A [Methanosaeta concilii GP-6] Length = 307 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 70/192 (36%), Gaps = 36/192 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + GG D + + + G R LT Sbjct: 20 CNL-----------KCIYC---HHEGELLPGGEIPGDMVVSIAKAAAELGM---RSVKLT 62 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG-------TIEPPQGIDWICVS-----PKAGC 139 GGEPLL+ D+ LI A + +I++ TNG G+D + VS P C Sbjct: 63 GGEPLLRKDLDLIIARIPQSLDISITTNGILLAERAEALARAGLDRVNVSLDSLQPNRYC 122 Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199 + +L+ V ++ S E D L + E I +C + Sbjct: 123 QITGGSPGDLEKVLAGIDASREA----DLLPIKLNFVVLKRNESEVPEMIDFCRRRG--- 175 Query: 200 LSVQTHKFIGIR 211 L +Q + + I+ Sbjct: 176 LILQLIELLDIQ 187 >gi|327399300|ref|YP_004340169.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Hippea maritima DSM 10411] gi|327181929|gb|AEA34110.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Hippea maritima DSM 10411] Length = 227 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 27/138 (19%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCN +C +C + G +D+ I + + + Sbjct: 25 GCNF-----------RCPYC----HNPELIDGTSARIDE--GEILSFLEKRKGKLTAVSI 67 Query: 91 TGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVSPKAGCDL 141 TGGEP L D IQ L K G+++ ++TNGT +D+I + KA + Sbjct: 68 TGGEPTLHKDRLFKFIQKLKKLGYKVKLDTNGTNPEIISKLLNSNLLDYIAMDVKAPLE- 126 Query: 142 KIKGGQELKLVFPQVNVS 159 K ++K+ + S Sbjct: 127 KYSDVVDVKVNIEAIKTS 144 >gi|325679452|ref|ZP_08159034.1| pyruvate formate-lyase 1-activating enzyme [Ruminococcus albus 8] gi|324108851|gb|EGC03085.1| pyruvate formate-lyase 1-activating enzyme [Ruminococcus albus 8] Length = 249 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 29/120 (24%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G +F F GC + +C +C DT + G Sbjct: 8 TESFSSVDGPGNRFV----IF--FQGCPM-----------RCLYCHNPDT----WEVNGG 46 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 ++L D + + G TGGEP LQ+ L + RG ++T G Sbjct: 47 REVTAEELLDEFDSVKEFLKGGG--ITCTGGEPCLQMGFLTELFEKAKARGINTCLDTCG 104 >gi|224541068|ref|ZP_03681607.1| hypothetical protein CATMIT_00219 [Catenibacterium mitsuokai DSM 15897] gi|224525992|gb|EEF95097.1| hypothetical protein CATMIT_00219 [Catenibacterium mitsuokai DSM 15897] Length = 381 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 27/153 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCN +C FC + + + + +E++ E Sbjct: 171 TGGCNF-----------KCPFCHNSDLVFLPENMVEIEQEDVLEFLEKRKNILEG----V 215 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVS----PK 136 +TGGEPLLQ + ++ + G+ I ++TNG+ +D++ V PK Sbjct: 216 CITGGEPLLQAGIVDFLRVIKDMGYSIKLDTNGSFPNKLKELVEDGLVDYVAVDIKNAPK 275 Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169 G L + V EN++ ++F Sbjct: 276 KYNKTIGLEGYRLDSIKTTVQYLLENHVDYEFR 308 >gi|154505214|ref|ZP_02041952.1| hypothetical protein RUMGNA_02727 [Ruminococcus gnavus ATCC 29149] gi|153794412|gb|EDN76832.1| hypothetical protein RUMGNA_02727 [Ruminococcus gnavus ATCC 29149] Length = 230 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 71/219 (32%), Gaps = 61/219 (27%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY-----C 88 + R + +C FC A I E+ + R Sbjct: 18 VACTIFTARCNFRCPFC---------HNASLVTHVDAAAAISEEEVFSFLAKRQGILDGV 68 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT-------IEPPQGIDWICVS-----P 135 +TGGEPLLQ D+ I+ + + G+++ ++TNG+ + +D++ + Sbjct: 69 CITGGEPLLQPDIEEFIRKVKELGYQVKLDTNGSNVLRLRRLVEQGLVDYVAMDIKNAPD 128 Query: 136 KAGCDLKIKGGQ------------------ELKLVFPQVNVSPENYIGF-----DFERFS 172 K G + I+ E + + E++ +++ Sbjct: 129 KYGMTIGIEEYDMSNIFQSVDFLMSGDVPYEFRTTVVRQFHKREDFAAIGRWIKGAKQYY 188 Query: 173 LQ----------PMDGPFLEENTNLAISYCFQN-PKWRL 200 LQ P + +E A+ +N P +L Sbjct: 189 LQSFVDSGDLICPGMKGYTKEIMEQALEIVKRNIPNAKL 227 >gi|226323711|ref|ZP_03799229.1| hypothetical protein COPCOM_01486 [Coprococcus comes ATCC 27758] gi|225207895|gb|EEG90249.1| hypothetical protein COPCOM_01486 [Coprococcus comes ATCC 27758] Length = 247 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 25/120 (20%) Query: 7 KEIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G +F GC L +C+FC DT + Sbjct: 11 TESFGSVDGPGVRFI----IFV--QGCPL-----------RCQFCHNPDT-WNMTDKNGA 52 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 + D+L + T K G ++GGEPLLQ+D + L + +G ++T G Sbjct: 53 TWRSADELLAQALR-YRTYWKNGGGITVSGGEPLLQIDFLLDLFKKAKAKGIHTTIDTAG 111 >gi|325663171|ref|ZP_08151621.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae bacterium 4_1_37FAA] gi|331086761|ref|ZP_08335838.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470625|gb|EGC73855.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae bacterium 4_1_37FAA] gi|330409927|gb|EGG89362.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae bacterium 9_1_43BFAA] Length = 257 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 31/158 (19%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC + +C +C DT + G + +V+++ + Sbjct: 24 IF--LQGCPM-----------RCLYCHNPDT----WEPNIGEQQSVEEVLEGFYSNLP-- 64 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGI-------DWIC 132 +TGGEP++Q+D + L L K ++T+G + P + Sbjct: 65 FYRHGGVTVTGGEPMMQMDFLIELFTKLKKDHIHTCIDTSGIMFQPSNAVFMEKLEKLLQ 124 Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 V+ D+K G+E K + N + + E+ Sbjct: 125 VTDLIMLDIKHINGEEHKKLTAHSNERILAFARYLDEQ 162 >gi|154493910|ref|ZP_02033230.1| hypothetical protein PARMER_03254 [Parabacteroides merdae ATCC 43184] gi|154086170|gb|EDN85215.1| hypothetical protein PARMER_03254 [Parabacteroides merdae ATCC 43184] Length = 240 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 54/159 (33%), Gaps = 39/159 (24%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F T+ G G RF GC L +C +C DT V + Sbjct: 9 ESFGTVDGPG---------IRFVVFMQGCPL-----------RCLYCHNPDTWEVKRETP 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 + L + K G +TGGEPLLQ + + + G A++T Sbjct: 49 Y--LLEPEALLAEVLRYKNFIAKGG--VTVTGGEPLLQPEFLKEFFRLCRENGIHTALDT 104 Query: 119 NG------TIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151 +G +E + +D + + K +KL Sbjct: 105 SGYICSGKALEVLEQVDLVLLDIKTIDAGLHPRLTAVKL 143 >gi|224367599|ref|YP_002601762.1| PflA [Desulfobacterium autotrophicum HRM2] gi|223690315|gb|ACN13598.1| PflA [Desulfobacterium autotrophicum HRM2] Length = 235 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 67/182 (36%), Gaps = 39/182 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 VF +GCN C +C D G +++ + ++ Sbjct: 22 VF--TTGCNFV-----------CPYCHNPDLVDQAKSREIKPIGK----EEIFAFLNKRQ 64 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPP-------QGIDW 130 + V+TGGEP LQ D+ I+ + GF + ++TNG+ +D+ Sbjct: 65 GLIDG----VVITGGEPTLQPDLAQFIRDIKALGFRVKLDTNGSRPEIIKSLLEKGLVDY 120 Query: 131 ICVSPKAGCDLKIKGGQ---ELKLVFPQVNVSPENYIGFDFERFSLQP-MDGPFLEENTN 186 I + K+ D ++K V + + ++F ++P +D +E+ Sbjct: 121 IAMDIKSNLDGYYLAAGRRFDVKTVSAAIKIIMAQAPAYEFRTTCVKPLIDQQKMEDIGA 180 Query: 187 LA 188 + Sbjct: 181 MI 182 >gi|317055864|ref|YP_004104331.1| pyruvate formate-lyase activating enzyme [Ruminococcus albus 7] gi|315448133|gb|ADU21697.1| pyruvate formate-lyase activating enzyme [Ruminococcus albus 7] Length = 248 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 35/123 (28%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G +F F GC + +C +C DT Q G Sbjct: 8 VESFSSVDGPGNRFV----IF--FQGCPM-----------RCLYCHNPDT----WQTDGG 46 Query: 63 GRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVE 117 ++L D ++E G TGGEP LQ+ L + RG ++ Sbjct: 47 REVTAEKLLGEYDSVKEFLKGGG-----ITCTGGEPCLQIGFLTELFEKAKSRGINTCLD 101 Query: 118 TNG 120 T+G Sbjct: 102 TSG 104 >gi|329961315|ref|ZP_08299461.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides fluxus YIT 12057] gi|328531921|gb|EGF58741.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides fluxus YIT 12057] Length = 232 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 26/115 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GC +C +C DT I G + D++ Sbjct: 2 GTFDGPGLRLVVF--LQGCPF-----------RCLYCANPDT----IDVKGGIPTSPDEI 44 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K+G +GGEP LQ +PL + L G I +++NG I Sbjct: 45 LQMAISQKAFFGKKGG-ITFSGGEPTLQAEALIPLFKELKANGIHICLDSNGGIW 98 >gi|254459192|ref|ZP_05072614.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Campylobacterales bacterium GD 1] gi|207084085|gb|EDZ61375.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Campylobacterales bacterium GD 1] Length = 234 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 17/94 (18%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 FSGCN+ +C +C + + G Y +D++ + + + E Sbjct: 37 FSGCNM-----------RCDYCYNKAIVF--SNSGSYTIDEVLEFLHSRVNLLEA----V 79 Query: 89 VLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 VL+GGE V +A+ K GF+I ++TNGT Sbjct: 80 VLSGGEASSHDLVEFCKAVKKLGFKIKLDTNGTY 113 >gi|269794948|ref|YP_003314403.1| pyruvate formate-lyase 1-activating enzyme [Sanguibacter keddieii DSM 10542] gi|269097133|gb|ACZ21569.1| pyruvate formate-lyase 1-activating enzyme [Sanguibacter keddieii DSM 10542] Length = 287 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 28/128 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF F+GC L +C +C DT ++ G D+L I Sbjct: 66 RMTVF--FAGCPL-----------RCLYCHNPDT----MKMKDGESVTSDELLRRIRRYK 108 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130 G ++GGE L+Q ++ G ++T+G T E + +D Sbjct: 109 AVFRSTGGGLTISGGEVLMQPAFAATILAGAKAEGIHTTIDTSGYLGASCTDEMLEDVDL 168 Query: 131 ICVSPKAG 138 + + K+G Sbjct: 169 VLLDVKSG 176 >gi|154496635|ref|ZP_02035331.1| hypothetical protein BACCAP_00927 [Bacteroides capillosus ATCC 29799] gi|150274268|gb|EDN01359.1| hypothetical protein BACCAP_00927 [Bacteroides capillosus ATCC 29799] Length = 242 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 19/103 (18%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE--KEGR 86 GCNL C +C +G V + D++ E + +G Sbjct: 25 LQGCNL-----------HCPWC----SNPEGMTFCGGTVCSVEDIVAEVLRSRPMFFDGG 69 Query: 87 YCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQG 127 LTGGE +Q L+ L+ G A+E+NGT Sbjct: 70 GVTLTGGEAAMQPQAVKELLSVLSGHGIHTALESNGTAPLLST 112 >gi|218961545|ref|YP_001741320.1| putative anaerobic ribonucleotide reductase activating enzyme (NrdG) [Candidatus Cloacamonas acidaminovorans] gi|167730202|emb|CAO81114.1| putative anaerobic ribonucleotide reductase activating enzyme (NrdG) [Candidatus Cloacamonas acidaminovorans] Length = 237 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 18/100 (18%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF GCN +C +C + RY+ + + K+ Sbjct: 22 VF--TQGCNF-----------RCPYC----HNPELVDPQRYSPLLETEKVLRFLYRRHKK 64 Query: 85 GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 V+TGGEP LQ D+ P ++ ++I ++TNG+ Sbjct: 65 LSAVVVTGGEPTLQEDLIPFLKLTKAMRYKIKLDTNGSRP 104 >gi|260655537|ref|ZP_05861025.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Jonquetella anthropi E3_33 E1] gi|260629985|gb|EEX48179.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Jonquetella anthropi E3_33 E1] Length = 229 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 43/160 (26%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 VF GCN +C +C VDQ +DL++E+ Sbjct: 20 ATVF--TLGCNF-----------RCPWC-----------HNGPLVDQSSDLLDEEDFFSF 55 Query: 83 KEGRY-----CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-------PQGID 129 R V+TGGEP + D+P I + G ++ ++TNG+ + +D Sbjct: 56 LASRKRLLDGVVVTGGEPTIHRDLPEFILRIKDMGLKVKLDTNGSHPAMMADLIDKKLVD 115 Query: 130 WICVSPKAG-CDLKIKGG-----QELKLVFPQVNVSPENY 163 +I + KA ++ G + L+ Q P + Sbjct: 116 YIAMDVKAAPSAYRLAAGTTVQLETLRQAIEQTRRLPHEF 155 >gi|327398449|ref|YP_004339318.1| Radical SAM domain-containing protein [Hippea maritima DSM 10411] gi|327181078|gb|AEA33259.1| Radical SAM domain protein [Hippea maritima DSM 10411] Length = 351 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 25/111 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + S R + + + ++IEE E+ VLT Sbjct: 16 CNLNCIHCRTSASMN--------------LEDRLSFEDITNIIEE---ISEQFKPVVVLT 58 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGT-------IEPPQGIDWICVS 134 GGEPLL+ DV + ++ +G + + TNGT ++ + ID + +S Sbjct: 59 GGEPLLREDVFDIADFIHSKGMRVGLATNGTLIDEGLALKIKKHIDIVSLS 109 >gi|84490213|ref|YP_448445.1| hypothetical protein Msp_1431 [Methanosphaera stadtmanae DSM 3091] gi|84373532|gb|ABC57802.1| partially conserved hypothetical protein [Methanosphaera stadtmanae DSM 3091] Length = 183 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 63/186 (33%), Gaps = 40/186 (21%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 G Y+ DQL + I++ + +TGGEPLL D L K ++ +ETN T Sbjct: 2 GKEYSYDQLNEEIQKLM---TPDFDSLEITGGEPLLHSDYIH-DFLKKYPYKAMLETNAT 57 Query: 122 IEPPQG-----IDWICVSPKAGCDLKIKGG------QELK----------------LVFP 154 ID + + K K ELK +V P Sbjct: 58 KPIELDNLNDVIDIVSMDIKLPEHFNSKDEWIEVYENELKSIEVMQLNNQKYYIKIVVSP 117 Query: 155 QVNVSPENYIGFDFERFS---------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205 ++ N I D S + PM+ ++N +N + Q H Sbjct: 118 TTPINVINKIMKDINDISKEVEIIIQPVSPMELWDKKDNLFKISEIIGKNHSVSIIPQIH 177 Query: 206 KFIGIR 211 K++ + Sbjct: 178 KYLNVE 183 >gi|289667004|ref|ZP_06488079.1| putative radical activating enzyme [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 136 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 33/131 (25%) Query: 103 LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVNVS 159 L+Q L G+++++ET+G ++ V P+ D+K G+E + + + + Sbjct: 7 LLQKLCDAGYDVSLETSGALDVSA------VDPRVSRVVDIKTPASGEEARNRWENLPLL 60 Query: 160 PE-NYIGF------DFE---------------RFSLQPMDGPFLEENTNLAISYCFQNPK 197 + I F D+E P LA Sbjct: 61 TARDQIKFVICSRADYEWSREIVAAQALDRRCTVWFSPSKSEVSPR--QLADWIVADRLP 118 Query: 198 WRLSVQTHKFI 208 R +Q HK + Sbjct: 119 VRFQMQLHKLL 129 >gi|154504499|ref|ZP_02041237.1| hypothetical protein RUMGNA_02003 [Ruminococcus gnavus ATCC 29149] gi|153794981|gb|EDN77401.1| hypothetical protein RUMGNA_02003 [Ruminococcus gnavus ATCC 29149] Length = 257 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 41/134 (30%) Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---D 51 MK Y I E F ++ G G RF SGC + +C+FC D Sbjct: 16 MKGY-IHSTESFGSVDGPG---------VRFLIFVSGCPM-----------RCQFCHNPD 54 Query: 52 TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVD--VPLIQAL 107 T G + + D+L D + W G+ ++GGEPLLQ+D + L + Sbjct: 55 T----WSMKTGTQMSADELLD---KAWKYRSYWGKSGGITVSGGEPLLQIDFLLELFKKA 107 Query: 108 NKRGFEIAVETNGT 121 ++G ++T+G Sbjct: 108 KEKGIHTTIDTSGA 121 >gi|269123081|ref|YP_003305658.1| pyruvate formate-lyase activating enzyme [Streptobacillus moniliformis DSM 12112] gi|268314407|gb|ACZ00781.1| pyruvate formate-lyase activating enzyme [Streptobacillus moniliformis DSM 12112] Length = 247 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 25/103 (24%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C +C DT +++ I + Sbjct: 23 IRFVLFLQGCPL-----------RCLYCHNVDT---WNLKDHKRLMTPEEVFKEI--MKV 66 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 G + ++GGEPLLQ D + L + + G ++T+G Sbjct: 67 RGFIKTGGVTVSGGEPLLQSDFIIELFKLCKEAGIHTCIDTSG 109 >gi|160880951|ref|YP_001559919.1| pyruvate formate-lyase activating enzyme [Clostridium phytofermentans ISDg] gi|160429617|gb|ABX43180.1| pyruvate formate-lyase activating enzyme [Clostridium phytofermentans ISDg] Length = 250 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 29/168 (17%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 E F T+ G G VF GC + +C++C + Sbjct: 8 TESFGTVDGPGIRFV----VF--LQGCPM-----------RCQYC----HNPDTWELNGG 46 Query: 66 NVDQLADLIEEQWITGEK-EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG-T 121 + + D+++E E +G +TGGEPLLQ++ L + K+G ++T+G T Sbjct: 47 TLRSVEDILKEYDSYKEFLKGGGITVTGGEPLLQLEFVTELFEEAKKKGIHTCIDTSGIT 106 Query: 122 IEPPQGIDWIC---VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 P ++ V+ D+K + K + N + + F Sbjct: 107 FRPADKEKYLPLLKVTDLVMLDIKQMNAIKHKELTGHDNANILEFARF 154 >gi|319901645|ref|YP_004161373.1| pyruvate formate-lyase activating enzyme [Bacteroides helcogenes P 36-108] gi|319416676|gb|ADV43787.1| pyruvate formate-lyase activating enzyme [Bacteroides helcogenes P 36-108] Length = 241 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 26/115 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GC +C +C DT I+ G + +++ Sbjct: 11 GTFDGPGLRLVVF--LQGCPF-----------RCLYCANPDT----IEIKGGTPTSSEEI 53 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K+G +GGEP LQ +PL++ L K G I +++NG I Sbjct: 54 LQMAISQKAFFGKKGG-ITFSGGEPTLQAEALIPLLKDLKKNGIHICLDSNGGIW 107 >gi|317127502|ref|YP_004093784.1| pyruvate formate-lyase activating enzyme [Bacillus cellulosilyticus DSM 2522] gi|315472450|gb|ADU29053.1| pyruvate formate-lyase activating enzyme [Bacillus cellulosilyticus DSM 2522] Length = 241 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT KG V +L + I++ Sbjct: 23 IF--TQGC-----------LLRCQYCHNPDT----WDRNKGNEMTVAELIEDIKKYMPYM 65 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 + ++GGEPLLQ+D + L + K G ++++G Sbjct: 66 KFSKGGVTVSGGEPLLQMDFLIALFKECKKLGIHTTIDSSG 106 >gi|331092301|ref|ZP_08341129.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae bacterium 2_1_46FAA] gi|330401733|gb|EGG81312.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae bacterium 2_1_46FAA] Length = 252 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 24/107 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC + +C++C DT V G ++ V ++ + Sbjct: 24 VF--LQGCPM-----------RCQYCHNPDTWKVNT----GEQHTVAEVLEGFYTNRPFY 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQ 126 G +TGGEP++Q+D + L L K G ++++G + P+ Sbjct: 67 RNGG--VTVTGGEPMMQMDFLIELFTQLKKDGIHTCIDSSGVMFQPE 111 >gi|302390514|ref|YP_003826335.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermosediminibacter oceani DSM 16646] gi|302201142|gb|ADL08712.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermosediminibacter oceani DSM 16646] Length = 240 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 30/123 (24%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG--IQGTKGGRYNVDQLADLIEEQWITG 81 VF GCN +C +C G + G+ G+ D +E + Sbjct: 31 TVF--LPGCNF-----------RCPYC---HNGPLVTGSPKGKVPESVFFDYLERRKKLI 74 Query: 82 EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQG-------IDWICV 133 + +TGGEP L D+P I L KRG ++ ++TNG+ +D++ V Sbjct: 75 DG----VCITGGEPTLWSDLPEFILKLKKRGLKVKLDTNGSRPEVLKELLNKGLLDYVAV 130 Query: 134 SPK 136 K Sbjct: 131 DIK 133 >gi|237736323|ref|ZP_04566804.1| pyruvate formate-lyase activating enzyme [Fusobacterium mortiferum ATCC 9817] gi|229421671|gb|EEO36718.1| pyruvate formate-lyase activating enzyme [Fusobacterium mortiferum ATCC 9817] Length = 242 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 16/98 (16%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +F GC L +C+FC G K + + + I+ K+ Sbjct: 24 IF--LQGCPL-----------RCKFCHNPDTWKIGEKKIQESAEDTLKKIKRYKNYFGKK 70 Query: 85 GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 G +TGGEPL+Q D + L + K G A++T+G Sbjct: 71 GG-VTVTGGEPLVQSDYVLELFKLCKKEGIHTALDTSG 107 >gi|225386322|ref|ZP_03756086.1| hypothetical protein CLOSTASPAR_00065 [Clostridium asparagiforme DSM 15981] gi|225047601|gb|EEG57847.1| hypothetical protein CLOSTASPAR_00065 [Clostridium asparagiforme DSM 15981] Length = 249 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 63/177 (35%), Gaps = 41/177 (23%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64 E F T+ G G +F SGC + +C +C DT G Sbjct: 9 ESFGTVDGPGIRM---VIF--LSGCPM-----------RCLYCHNPDT----WDPKGGTP 48 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 V+QL + + K G ++GGEPL Q+ L +A KRG ++T+G Sbjct: 49 MTVEQLLNQYDNARHFYRKGG--ITVSGGEPLTQIGFVTELFEAAKKRGIHTCLDTSG-- 104 Query: 123 EPPQGIDWICVSP-KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178 + P AG K L V V + ++ + + QP D Sbjct: 105 --------VTFRPDSAGVREKFDR---LAAVTDLVLLDIKHIDPQEHLKLCGQPQDN 150 >gi|220931944|ref|YP_002508852.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Halothermothrix orenii H 168] gi|219993254|gb|ACL69857.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Halothermothrix orenii H 168] Length = 231 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 51/123 (41%), Gaps = 26/123 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL-ADLIEEQWITGEK 83 VF GCNL +C +C K N+D + DL+ E +K Sbjct: 22 VF--TYGCNL-----------RCPYC----HNSGLVKNNNKNIDFISLDLLFEFLRRRKK 64 Query: 84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSP 135 +TGGEP LQ P I+ + K GF+I ++TNGT ID+I + Sbjct: 65 LIDGVCITGGEPTLQTGLEPFIRKIKKMGFKIKLDTNGTKPDLINKLVKENLIDYIAMDI 124 Query: 136 KAG 138 KA Sbjct: 125 KAP 127 >gi|38232995|ref|NP_938762.1| putative oxidoreductase [Corynebacterium diphtheriae NCTC 13129] gi|38199253|emb|CAE48884.1| Putative oxidoreductase [Corynebacterium diphtheriae] Length = 291 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 31/142 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ +F SGC L +C +C DT + +G V+ + I+ Sbjct: 68 RMTMFM--SGCPL-----------RCLYCHNPDT----MGMKEGTVERVESIVKKIKRYR 110 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130 + G ++GGEPL Q+ +++ ++ G ++T+G T E + ID Sbjct: 111 NVFKASGGGLTISGGEPLFQIAFTRRVLKEVHDAGIHTTIDTSGYLGARLTDEDLENIDL 170 Query: 131 ICVSPKAGCD---LKIKGGQEL 149 + + K+G + ++ GG+EL Sbjct: 171 VLLDVKSGDEETYHRVSGGREL 192 >gi|288819035|ref|YP_003433383.1| pyruvate formate-lyase activating enzyme [Hydrogenobacter thermophilus TK-6] gi|288788435|dbj|BAI70182.1| pyruvate formate-lyase activating enzyme [Hydrogenobacter thermophilus TK-6] gi|308752618|gb|ADO46101.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Hydrogenobacter thermophilus TK-6] Length = 247 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 28/156 (17%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF GCN +C +C + + G +++ +E++ E Sbjct: 40 VF--TQGCNF-----------RCPYCYNVELVLPEYFGKTIPQEEILSFLEQRVGKLEG- 85 Query: 85 GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSPK 136 V+TGGEP + + I+ + K F + ++TNG++ + +D+I + K Sbjct: 86 ---VVITGGEPTIHAGLKDFIEKVKKPSFSVKLDTNGSMPEVIEELIKDKLVDYIAMDIK 142 Query: 137 AGCD---LKIKGGQELKLVFPQVNVSPENYIGFDFE 169 A D ++ ++K + +N+ + + ++F Sbjct: 143 APPDKYEEVVRAKVDIKAINRSINLIMNSGVDYEFR 178 >gi|257792463|ref|YP_003183069.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Eggerthella lenta DSM 2243] gi|317490330|ref|ZP_07948816.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Eggerthella sp. 1_3_56FAA] gi|325833502|ref|ZP_08165951.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Eggerthella sp. HGA1] gi|257476360|gb|ACV56680.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Eggerthella lenta DSM 2243] gi|316910620|gb|EFV32243.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Eggerthella sp. 1_3_56FAA] gi|325485426|gb|EGC87895.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Eggerthella sp. HGA1] Length = 240 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 25/109 (22%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFC---D--TDFVGIQGTKGGR--YNVDQLADLIE 75 VF GCN +C FC D T G G ++D+L + Sbjct: 20 ATVF--TPGCNF-----------RCPFCHNADLVTGEAGRDGAAADSSALSIDELFAFLG 66 Query: 76 EQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 ++ + +TGGEPLLQ + +++ GF + ++TNG+ Sbjct: 67 KRQGLLDG----VCITGGEPLLQSGIDEFCTRVHELGFAVKLDTNGSFP 111 >gi|304404568|ref|ZP_07386229.1| pyruvate formate-lyase activating enzyme [Paenibacillus curdlanolyticus YK9] gi|304346375|gb|EFM12208.1| pyruvate formate-lyase activating enzyme [Paenibacillus curdlanolyticus YK9] Length = 245 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 64/172 (37%), Gaps = 38/172 (22%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F T+ G G RF GC + QC+FC DT Sbjct: 8 METFGTVDGPG---------IRFVLFMQGC-----------ALQCQFCHNPDT----WDP 43 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-----GFEI 114 G + VD++ + IE + G +TGGEP LQ P + L K G Sbjct: 44 ATGRQVTVDEILNEIEPYLAYYKGSGGGITVTGGEPTLQA--PFVAQLFKACKERFGLHT 101 Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 A++++G +P ++ + + DLK + + + Q N + + Sbjct: 102 ALDSSGFCDPSHAVELMTYTDLVLLDLKQMNNAKHERLTSQPNERILAFARW 153 >gi|156937491|ref|YP_001435287.1| radical SAM domain-containing protein [Ignicoccus hospitalis KIN4/I] gi|156566475|gb|ABU81880.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I] Length = 352 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 25/165 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA----DLIEEQWITGEKEGRYCVLTGGEPL 96 +R + C FC GR + D+L+ D+I E T +Y TGGEPL Sbjct: 19 ERCNFNCIFC-------HSEGAGRGSFDELSVNDYDMIAEA--TSRLGLKYVKFTGGEPL 69 Query: 97 LQVDV-PLIQALNKRGF-EIAVETNGTIEP-------PQGIDWICV---SPKAGCDLKIK 144 L+ D+ +I + + GF EI++ TNG + P G+ WI V S K +I Sbjct: 70 LRSDLEEIIHSFKEHGFEEISITTNGFLLPERTEGLKEAGVSWINVSLHSLKRQRFRRIT 129 Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAI 189 G L V + + EN I L+ ++ +EE AI Sbjct: 130 GVDALNRVLNGIEKALENGIEVRVNVVVLRGINEDEVEEIVKYAI 174 >gi|307544227|ref|YP_003896706.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Halomonas elongata DSM 2581] gi|307216251|emb|CBV41521.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Halomonas elongata DSM 2581] Length = 241 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 30/134 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF GC L +C +C Q + + A+ +E Sbjct: 32 VF--LQGCPL-----------RCGYC----HNPQMLAPRQAEPSEWAE-VEAFLERRRGL 73 Query: 85 GRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAG 138 V +GGEP L D+ I+ ++ GF++ + T G +DW+ G Sbjct: 74 LEAVVFSGGEPTLHADLAQAIERVHALGFKVGLHTAGIYPRRLQTLLPRLDWV------G 127 Query: 139 CDLKIKGGQELKLV 152 D+K G ++V Sbjct: 128 LDVKGPGADFDRIV 141 >gi|225390023|ref|ZP_03759747.1| hypothetical protein CLOSTASPAR_03773 [Clostridium asparagiforme DSM 15981] gi|225043900|gb|EEG54146.1| hypothetical protein CLOSTASPAR_03773 [Clostridium asparagiforme DSM 15981] Length = 228 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 19/107 (17%) Query: 16 EGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE 75 EG H RFSGC L + C G G G + ++ + Sbjct: 3 EGAHR------IRFSGCALCGACVE-----ACP------QGALGVYGRERSAGEVVAEVL 45 Query: 76 EQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 + + E G ++GGEP+ Q D L AL G + +ET+G Sbjct: 46 KDYDYYEDSGGGVTISGGEPMAQADYARELSGALKGAGLHVCMETSG 92 >gi|284048541|ref|YP_003398880.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Acidaminococcus fermentans DSM 20731] gi|283952762|gb|ADB47565.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Acidaminococcus fermentans DSM 20731] Length = 236 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 18/96 (18%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCNL +C +C + +G + D + + + Sbjct: 24 TGGCNL-----------RCPYC----HNSELLEGEMPSQD--MEEVMAYLDVRKGILDGV 66 Query: 89 VLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123 V++GGEP LQ VP + L ++G + ++TNG Sbjct: 67 VISGGEPCLQSDLVPFLARLKEKGLLVKLDTNGCFP 102 >gi|319893382|ref|YP_004150257.1| Pyruvate formate-lyase activating enzyme [Staphylococcus pseudintermedius HKU10-03] gi|317163078|gb|ADV06621.1| Pyruvate formate-lyase activating enzyme [Staphylococcus pseudintermedius HKU10-03] gi|323463552|gb|ADX75705.1| pyruvate formate-lyase-activating enzyme [Staphylococcus pseudintermedius ED99] Length = 253 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 15/97 (15%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +F GC +C +C D+L + I + Sbjct: 24 IF--TQGC-----------LLRCLYCHNPDTWKVNEPSRTATADELVNEIVPYLPYFQAS 70 Query: 85 GRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119 G ++GGEPLLQ+ L + L+ +G ++T+ Sbjct: 71 GGGVTISGGEPLLQMPFIEELFEKLHAQGIHTCIDTS 107 >gi|300857666|ref|YP_003782649.1| pyruvate formate-lyase activating enzyme [Corynebacterium pseudotuberculosis FRC41] gi|300685120|gb|ADK28042.1| pyruvate formate-lyase activating enzyme [Corynebacterium pseudotuberculosis FRC41] gi|302205405|gb|ADL09747.1| formate-C-acetyltransferase-activating enzyme [Corynebacterium pseudotuberculosis C231] gi|302329959|gb|ADL20153.1| Putative oxidoreductase [Corynebacterium pseudotuberculosis 1002] gi|308275643|gb|ADO25542.1| pyruvate formate-lyase activating enzyme [Corynebacterium pseudotuberculosis I19] Length = 289 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 30/141 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ +F +GC L +C +C DT +Q KG V+ + I+ Sbjct: 67 RMTMFM--AGCPL-----------RCLYCHNPDT----MQMKKGTLERVEDIIKKIKRYR 109 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130 + G ++GGEPL Q+ +++ ++ G ++T+G + E + ID Sbjct: 110 RVFKASGGGLTISGGEPLFQIAFTRRVLKEVHDAGIHTTIDTSGYLGARLSDEDLENIDL 169 Query: 131 ICVSPKAGCDLKIKG--GQEL 149 + + KAG + + G+EL Sbjct: 170 VLLDVKAGDEETYRRVTGREL 190 >gi|167762452|ref|ZP_02434579.1| hypothetical protein BACSTE_00807 [Bacteroides stercoris ATCC 43183] gi|167699558|gb|EDS16137.1| hypothetical protein BACSTE_00807 [Bacteroides stercoris ATCC 43183] Length = 232 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 43/115 (37%), Gaps = 26/115 (22%) Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 G G R+ VF GC +C +C DT I G ++ Sbjct: 2 GTFDGPGLRLVVF--LQGCPF-----------RCLYCANPDT----IDVKGGTPTPAGEI 44 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + Q K+G +GGEP LQ +PL + L G I ++TNG I Sbjct: 45 LQMAVSQKAFFGKKGG-ITFSGGEPTLQAEALIPLFKDLKANGIHICLDTNGGIW 98 >gi|317132608|ref|YP_004091922.1| pyruvate formate-lyase activating enzyme [Ethanoligenens harbinense YUAN-3] gi|315470587|gb|ADU27191.1| pyruvate formate-lyase activating enzyme [Ethanoligenens harbinense YUAN-3] Length = 258 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 44/123 (35%), Gaps = 29/123 (23%) Query: 10 FLTLQGEGGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 F +L G G R VF GC L +C +C DT G Sbjct: 24 FQSL---GAVDGPGLRAVVFM--QGCPL-----------RCAYCHNPDT----WLADGGE 63 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGT 121 L + I K G ++GGEPLLQ L L + G A++T+G Sbjct: 64 ETTAQALFEKILRYRPYFGKTGG-VTVSGGEPLLQWRFVAGLFSLLREAGVHTALDTSGV 122 Query: 122 IEP 124 +P Sbjct: 123 GDP 125 >gi|220933148|ref|YP_002510056.1| pyruvate formate-lyase activating enzyme [Halothermothrix orenii H 168] gi|219994458|gb|ACL71061.1| pyruvate formate-lyase activating enzyme [Halothermothrix orenii H 168] Length = 247 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC L +C++C DT G R +L + + Sbjct: 24 VF--TQGCPL-----------RCQYCHNPDT----WMRKAGKRVEAGELLLRVLKCKPYM 66 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 + G ++GGEP LQ L++A ++G A++T+G Sbjct: 67 DSSGGGVTISGGEPTLQPGFVRELLKACKEQGIHTALDTSG 107 >gi|317060665|ref|ZP_07925150.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D12] gi|313686341|gb|EFS23176.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D12] Length = 242 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 45/132 (34%), Gaps = 32/132 (24%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +CR+C DT Y +++ + Sbjct: 20 IRFVLFLQGCPL-----------RCRYCHNVDT---WNLQHPNYIYTAEEILQEVNRVRA 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWI 131 ++GGEPLLQ D Q +K G A++T+G + E + D + Sbjct: 66 FLTGG---VTVSGGEPLLQADFVKEFFQLCHKNGIHTALDTSGYIFTEKSKEVLEETDLV 122 Query: 132 CVSPKAGCDLKI 143 + K K Sbjct: 123 LLDIKHIDPEKY 134 >gi|293402280|ref|ZP_06646418.1| pyruvate-formate lyase-activating enzyme [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304387|gb|EFE45638.1| pyruvate-formate lyase-activating enzyme [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 379 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 18/101 (17%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F GCN+ +C FC + + + ++++ E Sbjct: 170 TIF--TGGCNM-----------RCPFCQNADLVFLNENTSQIPTKDIIAFLKKRRSVLEG 216 Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 +TGGEPLL + ++ + + G++I ++TNG+ Sbjct: 217 ----VCITGGEPLLNDTLESFLRTIKELGYQIKLDTNGSYP 253 >gi|254391279|ref|ZP_05006484.1| radical SAM domain-containing protein [Streptomyces clavuligerus ATCC 27064] gi|197704971|gb|EDY50783.1| radical SAM domain-containing protein [Streptomyces clavuligerus ATCC 27064] Length = 408 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 18/93 (19%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL +C +C + + G + + L+++ + R +L Sbjct: 25 GCNL-----------RCPYC---YASSEKCLPGELSPAESLALVDQ---IADMGARTLIL 67 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 TGGEP+L+ D+ + + +RG + + TNGT+ Sbjct: 68 TGGEPMLRKDLFDVAEHARERGLSVNMITNGTM 100 >gi|257463063|ref|ZP_05627465.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D12] Length = 241 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 45/132 (34%), Gaps = 32/132 (24%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +CR+C DT Y +++ + Sbjct: 19 IRFVLFLQGCPL-----------RCRYCHNVDT---WNLQHPNYIYTAEEILQEVNRVRA 64 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWI 131 ++GGEPLLQ D Q +K G A++T+G + E + D + Sbjct: 65 FLTGG---VTVSGGEPLLQADFVKEFFQLCHKNGIHTALDTSGYIFTEKSKEVLEETDLV 121 Query: 132 CVSPKAGCDLKI 143 + K K Sbjct: 122 LLDIKHIDPEKY 133 >gi|169334502|ref|ZP_02861695.1| hypothetical protein ANASTE_00905 [Anaerofustis stercorihominis DSM 17244] gi|169259219|gb|EDS73185.1| hypothetical protein ANASTE_00905 [Anaerofustis stercorihominis DSM 17244] Length = 235 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 20/106 (18%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 G VF GC A+C +C K G + + DL++ Sbjct: 19 GIRTVFF-LQGCP-----------ARCLYC----HNPDSWKIGAGSEVEAEDLVKRAKRG 62 Query: 81 GEKEGRY--CVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI 122 G +GGEPLLQ + I+AL K A++ +GT Sbjct: 63 IPYYGDDGGVTFSGGEPLLQGEFLIEAIKALKKENINCAIDISGTY 108 >gi|227833911|ref|YP_002835618.1| pyruvate formate lyase activating enzyme [Corynebacterium aurimucosum ATCC 700975] gi|262184914|ref|ZP_06044335.1| pyruvate formate lyase activating enzyme [Corynebacterium aurimucosum ATCC 700975] gi|227454927|gb|ACP33680.1| pyruvate formate lyase activating enzyme [Corynebacterium aurimucosum ATCC 700975] Length = 289 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 28/128 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ +F SGC L +C++C DT ++ G ++ + I+ Sbjct: 67 RMTMFM--SGCPL-----------RCQYCHNPDT----MEMKVGTLERIEDVVKRIKRYK 109 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTI------EPPQGIDW 130 + G ++GGEPL Q+ L++ ++ G ++T+G + E ID Sbjct: 110 PVFKASGGGLTISGGEPLFQIAFARRLLKEVHDAGIHTTIDTSGYLGARLRDEDLDNIDL 169 Query: 131 ICVSPKAG 138 + + K+G Sbjct: 170 VLLDVKSG 177 >gi|294816319|ref|ZP_06774962.1| Metallo cofactor biosynthesis protein [Streptomyces clavuligerus ATCC 27064] gi|326444650|ref|ZP_08219384.1| metallo cofactor biosynthesis protein [Streptomyces clavuligerus ATCC 27064] gi|294328918|gb|EFG10561.1| Metallo cofactor biosynthesis protein [Streptomyces clavuligerus ATCC 27064] Length = 492 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 18/93 (19%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL +C +C + + G + + L+++ + R +L Sbjct: 109 GCNL-----------RCPYC---YASSEKCLPGELSPAESLALVDQ---IADMGARTLIL 151 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 TGGEP+L+ D+ + + +RG + + TNGT+ Sbjct: 152 TGGEPMLRKDLFDVAEHARERGLSVNMITNGTM 184 >gi|284998082|ref|YP_003419849.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5] gi|284445977|gb|ADB87479.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5] Length = 370 Score = 55.8 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 25/114 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVL 90 CNL +CR+C +V ++ +IE K R Sbjct: 22 CNL-----------RCRYC---YVAAGIMGNNIMKLEDYMKIIENIISIKNKYNRIGITF 67 Query: 91 TGGEPLLQVDV-PLIQALNKRGF-EIAVETNGTIE--------PPQGIDWICVS 134 TGGEP L D+ +++ G IA+ TNGT+ G++WI VS Sbjct: 68 TGGEPTLHPDLIDMVRKAKDIGIDRIALVTNGTLMNKRFLDNLIDAGLEWIAVS 121 >gi|239828671|ref|YP_002951295.1| pyruvate formate-lyase activating enzyme [Geobacillus sp. WCH70] gi|239808964|gb|ACS26029.1| pyruvate formate-lyase activating enzyme [Geobacillus sp. WCH70] Length = 249 Score = 55.8 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ D ++ Sbjct: 23 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEMTVEEIIDDVKTYLPFI 65 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 G ++GGEPLLQ+D + L +A K G A++++G Sbjct: 66 NASGGGITVSGGEPLLQIDFLIELFKACKKLGIHTAIDSSG 106 >gi|223985353|ref|ZP_03635423.1| hypothetical protein HOLDEFILI_02729 [Holdemania filiformis DSM 12042] gi|223962679|gb|EEF67121.1| hypothetical protein HOLDEFILI_02729 [Holdemania filiformis DSM 12042] Length = 402 Score = 55.8 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 16/96 (16%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCN +C FC + + ++L D + + E Sbjct: 196 TGGCNF-----------RCPFCQNSDLVFLAENMAQIPKEELFDFLNRRQGILEG----I 240 Query: 89 VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 ++GGEPLLQ + ++ + + G+ + ++TNG+ Sbjct: 241 CISGGEPLLQPGIEVFLRQIKELGYPVKLDTNGSFP 276 >gi|167759293|ref|ZP_02431420.1| hypothetical protein CLOSCI_01640 [Clostridium scindens ATCC 35704] gi|167663167|gb|EDS07297.1| hypothetical protein CLOSCI_01640 [Clostridium scindens ATCC 35704] Length = 230 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 18/101 (17%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 VF +GCN +C FC + I K +++++ ++++ + Sbjct: 21 TVF--TAGCNF-----------RCPFCHNASLVIDTYKNEEISLEEVYSYLKKRQGILDG 67 Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 +TGGEPL+Q + + + + G+ + ++TNG+ Sbjct: 68 ----VCVTGGEPLIQHGIEEFLGNIKEMGYAVKLDTNGSFP 104 >gi|150403516|ref|YP_001330810.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanococcus maripaludis C7] gi|150034546|gb|ABR66659.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanococcus maripaludis C7] Length = 236 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 30/125 (24%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF SGCN+ G Q+ + T +++ + ++ + Sbjct: 22 VF--LSGCNMKCGYCQNYETI-------------TTNISEMTAEEVFNSMDLMFAES--- 63 Query: 85 GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSP 135 V++GGEP LQ + + L + ++GF + ++TNGT + +D+I + Sbjct: 64 ---LVISGGEPTLQPEAVLELAKLAKEKGFPVKLDTNGTNPDLVEKLISDKLLDYIAIDV 120 Query: 136 KAGCD 140 KAG D Sbjct: 121 KAGFD 125 >gi|21886612|dbj|BAC05499.1| BssD [Thauera sp. DNT-1] Length = 383 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 18/124 (14%) Query: 34 LWSGREQDRLSAQCR-FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 L R++ +C C G + + G +D++ + G ++G Sbjct: 133 LKLDRDKCTNCMRCVAVC---LTGSRESVGVEMTLDEILQEVLSDEPFYRNSGGGVTISG 189 Query: 93 GEPLLQVD--VPLIQALNKRGFEIAVETN------GTIEPPQG------IDWICVSPKAG 138 G+PL + L + + +RG +A+ET+ GTI+P +D ++PK Sbjct: 190 GDPLFHPAFTLELARRIKERGVHVAIETSCFPKKWGTIQPLLEFVDLFIVDLKSLNPKKH 249 Query: 139 CDLK 142 ++ Sbjct: 250 EEVV 253 >gi|240144448|ref|ZP_04743049.1| pyruvate formate-lyase 1-activating enzyme [Roseburia intestinalis L1-82] gi|257203558|gb|EEV01843.1| pyruvate formate-lyase 1-activating enzyme [Roseburia intestinalis L1-82] gi|291535660|emb|CBL08772.1| pyruvate formate-lyase 1-activating enzyme [Roseburia intestinalis M50/1] gi|291540927|emb|CBL14038.1| pyruvate formate-lyase 1-activating enzyme [Roseburia intestinalis XB6B4] Length = 249 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 43/119 (36%), Gaps = 29/119 (24%) Query: 8 EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F T+ G G VF F GC + +C++C DT T G Sbjct: 8 ESFGTVDGPGVRFV----VF--FEGCPM-----------RCQYCHNPDT----WVLTDGK 46 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 + D++ D TGGEP+LQ+D L G ++T+G Sbjct: 47 QMEADEIIDRFLRN--ASFYRTGGITATGGEPMLQIDFLTELFAKAKAHGIHTCLDTSG 103 >gi|172056644|ref|YP_001813104.1| pyruvate formate-lyase activating enzyme [Exiguobacterium sibiricum 255-15] gi|171989165|gb|ACB60087.1| pyruvate formate-lyase activating enzyme [Exiguobacterium sibiricum 255-15] Length = 242 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 25/114 (21%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C++C DT + G + ++ + E Sbjct: 22 IRFIVFTQGCPL-----------RCQYCHNADT----WEFGCGRSVSATEIIEEAESYRS 66 Query: 80 TGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 E G +GGEPL Q ++ ++G ++T G++ P+ ID I Sbjct: 67 FFEATGGGITFSGGEPLAQPEFLEAALREAKQKGMHTVIDTAGSV-VPKNIDRI 119 >gi|304438738|ref|ZP_07398666.1| pyruvate formate-lyase activating enzyme [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372740|gb|EFM26318.1| pyruvate formate-lyase activating enzyme [Peptoniphilus duerdenii ATCC BAA-1640] Length = 307 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 22/99 (22%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 GC + +C +C DT + T G +V+++ + E+ + + G Sbjct: 84 LQGCPM-----------RCLYCHNPDT----WRTTGGKLMSVEEVLNDYEKYRVYLKNGG 128 Query: 86 RYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 +TGGEPLLQ+D L + KR A++++G + Sbjct: 129 --ITVTGGEPLLQMDFVTELFKEAKKRNIHTALDSSGAL 165 >gi|295402436|ref|ZP_06812389.1| pyruvate formate-lyase activating enzyme [Geobacillus thermoglucosidasius C56-YS93] gi|312112710|ref|YP_003991026.1| pyruvate formate-lyase activating enzyme [Geobacillus sp. Y4.1MC1] gi|294975527|gb|EFG51152.1| pyruvate formate-lyase activating enzyme [Geobacillus thermoglucosidasius C56-YS93] gi|311217811|gb|ADP76415.1| pyruvate formate-lyase activating enzyme [Geobacillus sp. Y4.1MC1] Length = 249 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ D ++ Sbjct: 23 IF--TQGC-----------VLRCQYCHNADTWEIG----KGKEMTVEEIIDDVKTYLPFI 65 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 ++GGEPLLQ+D + L +A K G A++++G Sbjct: 66 NASNGGITVSGGEPLLQIDFLIELFKACKKLGIHTAIDSSG 106 >gi|73668569|ref|YP_304584.1| radical activating enzyme [Methanosarcina barkeri str. Fusaro] gi|72395731|gb|AAZ70004.1| radical activating enzyme [Methanosarcina barkeri str. Fusaro] Length = 260 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 19/104 (18%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 GR AV F GC L +C +C G V+ + +EEQ Sbjct: 18 GRAAVTIFFGGCPL-----------RCPYC-----QNHPYLQGLNPVE--LEFVEEQIKE 59 Query: 81 GEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 V +GGEPL+Q + PL + + G I + TNG Sbjct: 60 STLFVSAVVFSGGEPLMQKAIVPLAEFAREIGLAIGIHTNGCYP 103 >gi|262039689|ref|ZP_06012978.1| pyruvate formate-lyase-activating enzyme [Leptotrichia goodfellowii F0264] gi|261746306|gb|EEY33856.1| pyruvate formate-lyase-activating enzyme [Leptotrichia goodfellowii F0264] Length = 259 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 36/132 (27%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC--------DTDFV 55 IF +L GEG VF F GC L +C +C +T+++ Sbjct: 8 IFNIQRYSLNDGEGIRT---IVF--FKGCPL-----------RCPWCSNPESQSFETEYM 51 Query: 56 -----GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALN 108 G T G Y VD++ + + G L+GGE L Q + L++ L Sbjct: 52 KSNVNGNIKTIGKWYTVDEIIKEALKDEVFFNTSGGGVTLSGGEVLAQGEFIEELLKELK 111 Query: 109 KRGFEIAVETNG 120 + A+ET G Sbjct: 112 ENDINTAIETCG 123 >gi|90425004|ref|YP_533374.1| ribonucleoside-triphosphate reductase, anaerobic-like [Rhodopseudomonas palustris BisB18] gi|90107018|gb|ABD89055.1| Ribonucleoside-triphosphate reductase, anaerobic-like [Rhodopseudomonas palustris BisB18] Length = 219 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 7/119 (5%) Query: 28 RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 R S C+ C + D + G+ + + + Sbjct: 14 RLSTCDWPGQLAATVFCQGCPW-DCAYCHNPQLLPGKADAALPWSEVLQFLQRRRGLLDA 72 Query: 88 CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCD 140 V +GGEP LQ +P I+A+ G+ + + T G +DW+ KA + Sbjct: 73 VVFSGGEPTLQTALPRAIEAVRAMGYRVGLHTGGAYPQRLASILPLLDWVGFDVKAPFE 131 >gi|269469075|gb|EEZ80630.1| pyruvate-formate lyase-activating enzyme [uncultured SUP05 cluster bacterium] Length = 207 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 8/102 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 NL +CR+C + I +K +++ +Q+ + I+ + + V +G Sbjct: 21 NLSCVVFTQGCPWRCRYC-HNHDLIPTSKQTQFDWEQIVEFIKTRVGLLDA----VVFSG 75 Query: 93 GEPLLQV-DVPLIQALNKRGFEIAVETNGTIE--PPQGIDWI 131 GEP LQ + I+ + GF++ + T G Q +D++ Sbjct: 76 GEPCLQKGLLGAIKRVKALGFKVGLHTGGAYPNRLKQCLDYV 117 >gi|265767393|ref|ZP_06095059.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 2_1_16] gi|263252698|gb|EEZ24210.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 2_1_16] Length = 261 Score = 55.4 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 28/110 (25%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFC--------DTDFVGIQGTK---GGRYNVDQLAD 72 +F GC L +C +C ++ +G K G + V++L Sbjct: 34 TIF--LKGCPL-----------RCAWCHNPEGISPQPQYMIKKGVKSICGYQITVEELVT 80 Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 +IE+ LTGGEPL Q D + L++ L A+ET+G Sbjct: 81 MIEKNRSIYTLNRGGVTLTGGEPLFQPDFVIELLRQLPD--IHTAIETSG 128 >gi|294793985|ref|ZP_06759122.1| Fe-S oxidoreductase of MoaA family protein [Veillonella sp. 3_1_44] gi|294455555|gb|EFG23927.1| Fe-S oxidoreductase of MoaA family protein [Veillonella sp. 3_1_44] Length = 201 Score = 55.4 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 60/201 (29%), Gaps = 67/201 (33%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRG----------- 111 V ++AD+IE +TGGEPLLQ V LI LN R Sbjct: 1 MTVAEVADVIESLG------NHRITITGGEPLLQEGAVVKLIDELNCRKALKIQNSPSNQ 54 Query: 112 --------------------------FEIAVETNGTIEPPQGID--WICVSPKAGCDLK- 142 ++ +ETNGTI P + W K L Sbjct: 55 SELTCINDVDKDLDTFDKRERPNNSPYDFNIETNGTIVPSFQRENVWFTYDYKTPSSLAE 114 Query: 143 -------IKGGQE---LKLVF---PQVNVSPENYIGFD-FERFSLQPMDGPFLEENTNLA 188 K E +K V ++ + + + P+ G + Sbjct: 115 ESMNIDIFKVATERDLIKFVVGSPEDLDCMRRIISKYPTVAQIYVSPVWGQIEAAS---I 171 Query: 189 ISYCFQNP--KWRLSVQTHKF 207 I+Y R +Q HKF Sbjct: 172 INYMKTYNLQNVRFQLQIHKF 192 >gi|227496243|ref|ZP_03926540.1| [formate-C-acetyltransferase]-activating enzyme [Actinomyces urogenitalis DSM 15434] gi|226834231|gb|EEH66614.1| [formate-C-acetyltransferase]-activating enzyme [Actinomyces urogenitalis DSM 15434] Length = 294 Score = 55.4 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 69/193 (35%), Gaps = 39/193 (20%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF +GC L +C++C DT F+ G ++L + Sbjct: 72 RMTVF--LNGCPL-----------RCQYCHNPDT-FLMKDGEP---VEAEELLRRMRRYR 114 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130 L+GGE L+Q L++ K G ++T+G + E +D Sbjct: 115 GVFRASKGGITLSGGEVLMQPAFAGRLLEGAKKMGIHTCIDTSGFLGANASDEMLDNVDL 174 Query: 131 ICVSPKAGCDLKIKG--GQELKLVFPQVNVSPENYIGFDFERFSLQP--MDGPFLEENTN 186 + + K+G + K G++L + I + RF L P D P E Sbjct: 175 VLLDVKSGDEETYKRVTGRQLAPTIAFGDRLAAKGIEI-WARFVLVPGLTDDPENIEKVA 233 Query: 187 LAISYCFQNPKWR 199 I +WR Sbjct: 234 QIIE------RWR 240 >gi|60683601|ref|YP_213745.1| putative pyruvate formate-lyase activating enzyme [Bacteroides fragilis NCTC 9343] gi|253566526|ref|ZP_04843979.1| formate acetyltransferase activating enzyme [Bacteroides sp. 3_2_5] gi|60495035|emb|CAH09853.1| putative pyruvate formate-lyase activating enzyme [Bacteroides fragilis NCTC 9343] gi|251944698|gb|EES85173.1| formate acetyltransferase activating enzyme [Bacteroides sp. 3_2_5] gi|301165116|emb|CBW24684.1| putative pyruvate formate-lyase activating enzyme [Bacteroides fragilis 638R] Length = 261 Score = 55.4 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 28/110 (25%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFC--------DTDFVGIQGTK---GGRYNVDQLAD 72 +F GC L +C +C ++ +G K G + V++L Sbjct: 34 TIF--LKGCPL-----------RCAWCHNPEGISPQPQYMIKKGVKSICGYQITVEELVT 80 Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 +IE+ LTGGEPL Q D + L++ L A+ET+G Sbjct: 81 MIEKNRSIYTLNRGGVTLTGGEPLFQPDFVIELLRQLPD--IHTAIETSG 128 >gi|21227468|ref|NP_633390.1| ribonucleoside-triphosphate reductase activating enzyme [Methanosarcina mazei Go1] gi|20905840|gb|AAM31062.1| Ribonucleoside-triphosphate reductase activating enzyme [Methanosarcina mazei Go1] Length = 263 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 23/108 (21%) Query: 19 HAGRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 G+ A +F R GC L +C +C + ++GT + +EE Sbjct: 20 WTGKSAFTIFFR--GCPL-----------RCPYC-QNHPYLEGTGLVE------LEFVEE 59 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 + + + V +GGEPL+Q + L + G + + TNG Sbjct: 60 KIKSSKPFVSAVVFSGGEPLMQAGIVDLAEFAKNLGLSVGIHTNGCYP 107 >gi|53715662|ref|YP_101654.1| formate acetyltransferase activating enzyme [Bacteroides fragilis YCH46] gi|52218527|dbj|BAD51120.1| formate acetyltransferase activating enzyme [Bacteroides fragilis YCH46] Length = 250 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 28/110 (25%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFC--------DTDFVGIQGTK---GGRYNVDQLAD 72 +F GC L +C +C ++ +G K G + V++L Sbjct: 23 TIF--LKGCPL-----------RCAWCHNPEGISPQPQYMIKKGVKSICGYQITVEELVT 69 Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 +IE+ LTGGEPL Q D + L++ L A+ET+G Sbjct: 70 MIEKNRSIYTLNRGGVTLTGGEPLFQPDFVIELLRQLPD--IHTAIETSG 117 >gi|289192331|ref|YP_003458272.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanocaldococcus sp. FS406-22] gi|288938781|gb|ADC69536.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanocaldococcus sp. FS406-22] Length = 240 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 36/141 (25%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +F GCN+ +C +C + V+++ + I+ + Sbjct: 24 IF--LHGCNM-----------RCPYC--HNLRFMLEHKREMTVEEIFNDIDFLFADA--- 65 Query: 85 GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSP 135 V++GGEP LQ D + + + ++GF + ++TNGT ID++ + Sbjct: 66 ---IVISGGEPTLQKDAVIEIARYAKEKGFPVKIDTNGTHPEVIEELIKNNLIDYVAIDV 122 Query: 136 KAGCD-----LKIKG-GQELK 150 K D +K + G E+K Sbjct: 123 KCRFDRYKEFVKCREDGNEIK 143 >gi|313905270|ref|ZP_07838637.1| pyruvate formate-lyase activating enzyme [Eubacterium cellulosolvens 6] gi|313469881|gb|EFR65216.1| pyruvate formate-lyase activating enzyme [Eubacterium cellulosolvens 6] Length = 244 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 71/180 (39%), Gaps = 46/180 (25%) Query: 8 EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F ++ G G +F R GC +CR+C DT + K Sbjct: 10 ETFGSVDGPGVRFV----IFVR--GC-----------KMRCRYCHNADTWKMQTDNMK-- 50 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG- 120 D+L D E++ ++ ++GGEPLLQ+D + L + +RG + ++T G Sbjct: 51 --TADELLDQ-AERYKAYWRDDGGITVSGGEPLLQIDFLLDLFKKAKERGIKTCIDTAGQ 107 Query: 121 --TIEPP---------QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169 T E P Q D + V D+K +E K + Q N + + + E Sbjct: 108 PFTREEPFFSKFKELMQYTDLLLV------DIKHIDSEEHKKLTAQPNENIHDMFRYLSE 161 >gi|262382718|ref|ZP_06075855.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 2_1_33B] gi|262295596|gb|EEY83527.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 2_1_33B] Length = 244 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 33/122 (27%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F T+ G G RF GC L +C +C DT +G Sbjct: 10 ESFGTVDGPG---------IRFVVFMQGCPL-----------RCLYCHNPDT--WNPKGK 47 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 + +L + + G +TGGEPLLQ + + ++G A++T Sbjct: 48 VKYQMTPGELLTEVLRYKSFIARGG--VTVTGGEPLLQPEFLKEFFRLCQEQGLHTALDT 105 Query: 119 NG 120 +G Sbjct: 106 SG 107 >gi|302669153|ref|YP_003832303.1| anaerobic ribonucleoside triphosphate reductase activating protein NrdG2 [Butyrivibrio proteoclasticus B316] gi|302396817|gb|ADL35721.1| anaerobic ribonucleoside triphosphate reductase activating protein NrdG2 [Butyrivibrio proteoclasticus B316] Length = 238 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 21/109 (19%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 VF GC+ +C FC ++ + G+ + D+ + ++ + Sbjct: 21 TVF--LGGCDF-----------RCPFC-HNYELVDGSAEPVMDEDEFFSFLSKREGILDG 66 Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE--PPQGID 129 +TGGEP L+ D+ + + + GF + ++TNG + ID Sbjct: 67 ----VCITGGEPCLRADLANFARQIKEMGFTVKLDTNGAHPDRVKELID 111 >gi|116749627|ref|YP_846314.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116698691|gb|ABK17879.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB] Length = 368 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 24/124 (19%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQ----GTKGGRYNVDQLADLIEEQWITGEKEGR 86 GCNL CR C ++G + + +V + +I++ G Sbjct: 23 GCNLC-----------CRHC---WIGPKHLSAADRPTGLDVRLVRSIIDQAKPLGLSG-- 66 Query: 87 YCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWI--CVSPKAGCDLKI 143 LTGGEPLL + +++ L + VETNGT+ P+ + C SP L Sbjct: 67 -VKLTGGEPLLHPGILDILEILRAGNLPVNVETNGTLCTPELARALAGCSSPSVAVSLDA 125 Query: 144 KGGQ 147 + Sbjct: 126 PDAE 129 >gi|150009974|ref|YP_001304717.1| pyruvate-formate lyase-activating enzyme [Parabacteroides distasonis ATCC 8503] gi|255012762|ref|ZP_05284888.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 2_1_7] gi|256838769|ref|ZP_05544279.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp. D13] gi|298374331|ref|ZP_06984289.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 3_1_19] gi|301307860|ref|ZP_07213816.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 20_3] gi|149938398|gb|ABR45095.1| pyruvate-formate lyase-activating enzyme [Parabacteroides distasonis ATCC 8503] gi|256739688|gb|EEU53012.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp. D13] gi|298268699|gb|EFI10354.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 3_1_19] gi|300834203|gb|EFK64817.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 20_3] Length = 244 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 33/122 (27%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F T+ G G RF GC L +C +C DT +G Sbjct: 10 ESFGTVDGPG---------IRFVVFMQGCPL-----------RCLYCHNPDT--WNPKGK 47 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 + +L + + G +TGGEPLLQ + + ++G A++T Sbjct: 48 VKYQMTPGELLTEVLRYKSFIARGG--VTVTGGEPLLQPEFLKEFFRLCQEQGLHTALDT 105 Query: 119 NG 120 +G Sbjct: 106 SG 107 >gi|317497017|ref|ZP_07955345.1| glycyl-radical enzyme activating protein family [Lachnospiraceae bacterium 5_1_63FAA] gi|316895677|gb|EFV17831.1| glycyl-radical enzyme activating protein family [Lachnospiraceae bacterium 5_1_63FAA] Length = 304 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%) Query: 48 RFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQ 105 +C T + + +V+ + + I + ++GGEPLLQ L++ Sbjct: 91 DWCPTGAIAMDS---REMSVEMVMEEIRKDKSFYRYGNGGVTISGGEPLLQWKFTKELLK 147 Query: 106 ALNKRGFEIAVETN 119 A K G A+ET+ Sbjct: 148 ACKKEGIHTAIETS 161 >gi|317499702|ref|ZP_07957960.1| radical SAM superfamily protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316893008|gb|EFV15232.1| radical SAM superfamily protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 157 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 23/101 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC + +CRFC DT + + G Y ++L I Sbjct: 24 IF--LQGC-----------ALRCRFCHNPDT----WELSGGTEYTPEELVAKIRRFKPYF 66 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +++G +GGEPLLQ D ++ G ++T G Sbjct: 67 KEDGG-VTFSGGEPLLQPDFLKETLKLCKNEGIHTCIDTAG 106 >gi|291558950|emb|CBL37750.1| glycyl-radical enzyme activating protein family [butyrate-producing bacterium SSC/2] Length = 304 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%) Query: 48 RFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQ 105 +C T + + +V+ + + I + ++GGEPLLQ L++ Sbjct: 91 DWCPTGAIAMDS---REMSVEMVMEEIRKDKSFYRYGNGGVTISGGEPLLQWKFTKELLK 147 Query: 106 ALNKRGFEIAVETN 119 A K G A+ET+ Sbjct: 148 ACKKEGIHTAIETS 161 >gi|218258025|ref|ZP_03474467.1| hypothetical protein PRABACTJOHN_00120 [Parabacteroides johnsonii DSM 18315] gi|218225824|gb|EEC98474.1| hypothetical protein PRABACTJOHN_00120 [Parabacteroides johnsonii DSM 18315] Length = 240 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 57/159 (35%), Gaps = 39/159 (24%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F T+ G G RF GC L +C +C DT + + T Sbjct: 9 ESFGTVDGPG---------IRFVVFMQGCPL-----------RCLYCHNPDT-WEVKRET 47 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 LA+++ + + +TGGEPLLQ + + + G A++T Sbjct: 48 PYQLEPKALLAEVLRYKNFIAKGG---VTVTGGEPLLQPEFLKEFFRLCRENGIHTALDT 104 Query: 119 NG------TIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151 +G +E + +D + + K +KL Sbjct: 105 SGYICSGKALEVLEYVDLVLLDIKTIDAGLHPRLTAVKL 143 >gi|167765640|ref|ZP_02437693.1| hypothetical protein CLOSS21_00124 [Clostridium sp. SS2/1] gi|167712686|gb|EDS23265.1| hypothetical protein CLOSS21_00124 [Clostridium sp. SS2/1] Length = 309 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%) Query: 48 RFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQ 105 +C T + + +V+ + + I + ++GGEPLLQ L++ Sbjct: 96 DWCPTGAIAMDS---REMSVEMVMEEIRKDKSFYRYGNGGVTISGGEPLLQWKFTKELLK 152 Query: 106 ALNKRGFEIAVETN 119 A K G A+ET+ Sbjct: 153 ACKKEGIHTAIETS 166 >gi|150388344|ref|YP_001318393.1| glycyl-radical activating family protein [Alkaliphilus metalliredigens QYMF] gi|149948206|gb|ABR46734.1| glycyl-radical enzyme activating protein family [Alkaliphilus metalliredigens QYMF] Length = 258 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 23/111 (20%) Query: 20 AGRVA-VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTK----GGRYNVDQLA 71 G VF F GC L +C +C ++ + I+ G V ++ Sbjct: 24 TGIRTTVF--FKGCPL-----------RCLWCANPESQKIEIEEMGERKIGRIATVQEVL 70 Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 D++ + + G L+GGEPL+Q + L++ ++ A+ET+G Sbjct: 71 DVVSRDKMFYNRSGGGMTLSGGEPLMQPEFASALVKEAKRQDIHTAIETSG 121 >gi|20088970|ref|NP_615045.1| radical activating enzyme [Methanosarcina acetivorans C2A] gi|19913819|gb|AAM03525.1| radical activating enzyme [Methanosarcina acetivorans C2A] Length = 264 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 64/189 (33%), Gaps = 35/189 (18%) Query: 19 HAGRVAV--FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 G+ AV F R GC L +C +C ++ ++G D ++E Sbjct: 20 WTGKSAVTIFFR--GCPL-----------RCPYC-QNYPYLEGAGLVE------LDFLKE 59 Query: 77 QWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQG-------I 128 Q + V +GGEPL+Q +PL + G + V TNG + Sbjct: 60 QIKISKPFVSAVVFSGGEPLMQEAIIPLAEFAKILGLAVGVHTNGCYPERAAELVERKLV 119 Query: 129 DWICVSPKAGCD-----LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183 D + KA D K+ G E K V +PE + LE Sbjct: 120 DKFFIDVKAPLDDPELYGKVSGWVEYKGASVAVKRNPEEIAAAVAKTIETADTSDLELEL 179 Query: 184 NTNLAISYC 192 T + + Sbjct: 180 RTTVIRDFI 188 >gi|283768229|ref|ZP_06341142.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Bulleidia extructa W1219] gi|283105106|gb|EFC06477.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Bulleidia extructa W1219] Length = 373 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 16/95 (16%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 SGCNL +C FC+ + + + D ++ + E Sbjct: 177 SGCNL-----------KCPFCNQKDLVFLPQEANFLETQDILDDLKTRVGFLEG----VC 221 Query: 90 LTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123 ++GGEP Q +P + + K G I +ETNGT Sbjct: 222 ISGGEPCQQEALIPFLVEIKKLGLAIKLETNGTFP 256 >gi|254361126|ref|ZP_04977270.1| hypothetical protein gi|261491929|ref|ZP_05988506.1| purine nucleoside phosphorylase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496267|ref|ZP_05992672.1| purine nucleoside phosphorylase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092617|gb|EDN73666.1| [formate-C-acetyltransferase]-activating enzyme [Mannheimia haemolytica PHL213] gi|261308098|gb|EEY09396.1| purine nucleoside phosphorylase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312396|gb|EEY13522.1| purine nucleoside phosphorylase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 262 Score = 55.0 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 30/151 (19%) Query: 3 LYSIKEIFLTL---------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD 53 + ++ EIF+ L +G+G ++F GC L + + Sbjct: 1 MAALSEIFVPLHRIIPFSNVEGQGNRT---SIF--LQGCKLNCLYCHNPETIP------R 49 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRG 111 + +Y DQ+ + + R ++GGEP + VPL +AL ++G Sbjct: 50 YSKEAKQVSLQYLYDQVMEAV--------PFIRGVTISGGEPTIHHKKLVPLFEALREQG 101 Query: 112 FEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 ++++G + I V+ K DLK Sbjct: 102 LTCYLDSSGFFDFEATEPLINVTDKFLFDLK 132 >gi|293375734|ref|ZP_06622006.1| pyruvate formate-lyase 1-activating enzyme [Turicibacter sanguinis PC909] gi|292645677|gb|EFF63715.1| pyruvate formate-lyase 1-activating enzyme [Turicibacter sanguinis PC909] Length = 253 Score = 55.0 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 33/169 (19%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 E F T+ G G VF GC L +C +C K Sbjct: 18 VESFGTVDGPGLRFI----VFV--QGCGL-----------RCAYC----HNPDSWKMKEG 56 Query: 66 NVDQLADLIEEQWITGEKEGRY---CVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 V +++++++E E ++GGEPLLQ+ L + K G ++T+G Sbjct: 57 KVTEVSEIVDELIKYKEFFEASGGGITVSGGEPLLQMPFVTELFKECKKHGIHTNIDTSG 116 Query: 121 -----TIEPPQGI-DWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY 163 T E + + + V+ D+K+ + K + + N + Sbjct: 117 DLHFNTEERKAQLKELLSVTDMLMLDIKMFDAHKHKQLTGKDNAHILEF 165 >gi|158319999|ref|YP_001512506.1| radical SAM domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158140198|gb|ABW18510.1| Radical SAM domain protein [Alkaliphilus oremlandii OhILAs] Length = 242 Score = 55.0 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 22/124 (17%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 +F GCNL C +C +T + T Y V++L L+++ Sbjct: 27 TIFV--QGCNL-----------NCIYCHNPETIQLPCSETTHTNYTVEELITLLKQY--- 70 Query: 81 GEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAG 138 R ++GGE + D V L + + K G V+TNG +D I + K Sbjct: 71 -SPYIRGITVSGGEATIYSDFLVELFKEVKKLGITCYVDTNGIFNKDHKLDLIEATDKFL 129 Query: 139 CDLK 142 D+K Sbjct: 130 FDIK 133 >gi|325838715|ref|ZP_08166630.1| pyruvate formate-lyase 1-activating enzyme [Turicibacter sp. HGF1] gi|325490765|gb|EGC93072.1| pyruvate formate-lyase 1-activating enzyme [Turicibacter sp. HGF1] Length = 243 Score = 55.0 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 33/169 (19%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 E F T+ G G VF GC L +C +C K Sbjct: 8 VESFGTVDGPGLRFI----VFV--QGCGL-----------RCAYC----HNPDSWKMKEG 46 Query: 66 NVDQLADLIEEQWITGEKEGRY---CVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 V +++++++E E ++GGEPLLQ+ L + K G ++T+G Sbjct: 47 KVTEVSEIVDELIKYKEFFEASGGGITVSGGEPLLQMPFVTELFKECKKHGIHTNIDTSG 106 Query: 121 -----TIEPPQGI-DWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY 163 T E + + + V+ D+K+ + K + + N + Sbjct: 107 DLHFNTEERKAQLKELLSVTDMLMLDIKMFDAHKHKQLTGKDNAHILEF 155 >gi|291520376|emb|CBK75597.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Butyrivibrio fibrisolvens 16/4] Length = 231 Score = 55.0 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 18/101 (17%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F GCN +C +C + + Y+ D++ D + ++ + Sbjct: 21 TIF--TGGCNF-----------KCPYCHNRDLVMPPADVLAYSKDEIFDHLNKKKKILDG 67 Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 +TGGEP L D+P I + G + ++TNGT Sbjct: 68 ----VCITGGEPTLHKDLPDFISEIKDLGLLVKLDTNGTNP 104 >gi|328947091|ref|YP_004364428.1| pyruvate formate-lyase activating enzyme [Treponema succinifaciens DSM 2489] gi|328447415|gb|AEB13131.1| pyruvate formate-lyase activating enzyme [Treponema succinifaciens DSM 2489] Length = 248 Score = 54.6 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 30/120 (25%) Query: 8 EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F ++ G G +F FSGC L +C++C DT KG Sbjct: 9 ESFGSVDGPGVRFI----IF--FSGCPL-----------RCKYCHNPDT----WDMAKGK 47 Query: 64 RYNVDQLA-DLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 Y D+L + + + G K G ++GGEPL+Q+D + L ++G ++T G Sbjct: 48 LYTADELLNEALSCKAYWGAKGG--ITVSGGEPLMQLDFLLELFTKAKEKGVNTCIDTAG 105 >gi|304317366|ref|YP_003852511.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778868|gb|ADL69427.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 227 Score = 54.6 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 65/190 (34%), Gaps = 34/190 (17%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 VF SGCN C +C + + + + Sbjct: 20 TVF--TSGCNFT-----------CPYC------HNSQLIDLQKPIKSEEEFIDYLKKRKN 60 Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-------PPQGIDWICVS- 134 +TGGEP L D+ I+ + GF + ++TNG+ +D+I + Sbjct: 61 LIDGVCITGGEPTLWKDLKNFIKTIRDLGFSVKLDTNGSRPNVIEDLLNDNLLDYIAMDV 120 Query: 135 --PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE----RFSLQPMDGPFLEENTNLA 188 PK L +K +++ + +++ I ++F + L D + ++ Sbjct: 121 KAPKNKYGLFVKNNEDIGRIVKSIDLIKNCGIDYEFRTTVNKKLLSTDDFLSIANMISVC 180 Query: 189 ISYCFQNPKW 198 Y Q K+ Sbjct: 181 KRYVLQRYKY 190 >gi|225849855|ref|YP_002730089.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Persephonella marina EX-H1] gi|225646311|gb|ACO04497.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Persephonella marina EX-H1] Length = 231 Score = 54.6 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 18/100 (18%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +F GCNL +C +C + + G +D++ +E + E Sbjct: 23 IFV--QGCNL-----------RCPYCHNRHLVLPEYFGYTIGIDEVFRFLESRKKMIEG- 68 Query: 85 GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 V++GGEP + + I+ + + G+ + ++TNGT Sbjct: 69 ---IVISGGEPTIYEGIKDFIKKIKEFGYLVKLDTNGTNP 105 >gi|323704570|ref|ZP_08116148.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323536032|gb|EGB25805.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 227 Score = 54.6 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 32/159 (20%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF SGCN C +C ++ + + + D + Sbjct: 19 ATVFV--SGCNFV-----------CPYCHNSQLIKSKKPVKSEAEFLEYLDKRKNLIDG- 64 Query: 82 EKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP-------PQGIDWICV 133 +TGGEP L + I+ + GF ++TNG+ +D+I + Sbjct: 65 ------VCITGGEPTLWDGLYDFIKDIKDLGFSAKLDTNGSRPDVIERLLNDDLVDYIAM 118 Query: 134 S---PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169 PK L +K ++++ + +++ + I ++F Sbjct: 119 DVKAPKNKYGLFVKNNEDIERIVKSIDLIKNSGIDYEFR 157 >gi|222150683|ref|YP_002559836.1| formate acetyltransferase activating enzyme [Macrococcus caseolyticus JCSC5402] gi|222119805|dbj|BAH17140.1| formate acetyltransferase activating enzyme [Macrococcus caseolyticus JCSC5402] Length = 251 Score = 54.6 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 13/93 (13%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GC +C+FC GT +++ + I G Sbjct: 26 TQGC-----------LLRCQFCHNPDTWEIGTPSREVTAEEMVEEIVPYIPYFNASGGGV 74 Query: 89 VLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119 ++GGEPLLQ+ L + L + G ++T+ Sbjct: 75 TISGGEPLLQLPFIEQLFRRLKEEGIHTCIDTS 107 >gi|255011511|ref|ZP_05283637.1| putative pyruvate formate-lyase activating enzyme [Bacteroides fragilis 3_1_12] gi|313149337|ref|ZP_07811530.1| pyruvate-formate lyase-activating enzyme [Bacteroides fragilis 3_1_12] gi|313138104|gb|EFR55464.1| pyruvate-formate lyase-activating enzyme [Bacteroides fragilis 3_1_12] Length = 261 Score = 54.6 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 28/110 (25%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFC--------DTDFVGIQGTK---GGRYNVDQLAD 72 +F GC L C +C ++ +G K G + V++L Sbjct: 34 TIF--LKGCPL-----------HCAWCHNPEGISPQPQYMIKKGVKSICGYQITVEELIA 80 Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 +IE+ LTGGEPL Q D L++ L A+ET+G Sbjct: 81 IIEKNRDIYRLNRGGITLTGGEPLFQPDFITELLEQLPD--IHTAIETSG 128 >gi|281355779|ref|ZP_06242273.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548] gi|281318659|gb|EFB02679.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548] Length = 325 Score = 54.3 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 14/96 (14%) Query: 29 FSG-CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 +G CNL CRFC G+ V+ L E + Sbjct: 14 LTGRCNL-----------HCRFCG-QSKGMLAAGESELPVETWLRLAREVRALADTPEPE 61 Query: 88 CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 L GGEPLL P L + L + GF +A TNGT+ Sbjct: 62 ITLWGGEPLLYSGFPRLARRLKEEGFRVAAVTNGTL 97 >gi|153854344|ref|ZP_01995643.1| hypothetical protein DORLON_01638 [Dorea longicatena DSM 13814] gi|149753119|gb|EDM63050.1| hypothetical protein DORLON_01638 [Dorea longicatena DSM 13814] Length = 368 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 14/92 (15%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R+S + G +++ E+ G + +LT Sbjct: 35 CNLNCDMCYVRMSRE----------EMEEVGRLRTMEEWTKTAEDMMRAG---TLFVLLT 81 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL L Q L + G I + TNGT+ Sbjct: 82 GGEPLLYPHFRELYQKLRELGMIITINTNGTL 113 >gi|254519817|ref|ZP_05131873.1| pyruvate formate-lyase activating enzyme [Clostridium sp. 7_2_43FAA] gi|226913566|gb|EEH98767.1| pyruvate formate-lyase activating enzyme [Clostridium sp. 7_2_43FAA] Length = 237 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC L +C +C DT +G Y ++L I+ Sbjct: 24 VF--FQGCKL-----------RCLYCHNPDT----WSENEGNEYTSEELVKKIKRYKSYF 66 Query: 82 EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120 G +GG+PL Q + L ++ G ++T+G Sbjct: 67 ATSGGGVTFSGGDPLRQPEFLLEVLKECKAEGIHTCLDTSG 107 >gi|237808650|ref|YP_002893090.1| pyruvate formate lyase II activase [Tolumonas auensis DSM 9187] gi|237500911|gb|ACQ93504.1| glycyl-radical enzyme activating protein family [Tolumonas auensis DSM 9187] Length = 287 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 23/122 (18%) Query: 20 AGRVAV-FCRFSGCNL---WSGREQDRL--------SAQCRFCDTDFVGIQGTK------ 61 G V F GC L W + R A+C CD ++ Sbjct: 31 TGIRTVVF--LKGCPLACPWCANPESRSHKVEYVIREAKCIHCDICPKTVEDCPSGAYER 88 Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118 G VD++ +++ + ++GGE L Q + L++ L G A+ET Sbjct: 89 IGTDMTVDEVMKELKKDAVFYFTSNGGVTISGGEVLAQAPFAIELLKRLKAIGIRTAIET 148 Query: 119 NG 120 G Sbjct: 149 TG 150 >gi|284051128|ref|ZP_06381338.1| pyruvate formate-lyase activating enzyme [Arthrospira platensis str. Paraca] Length = 249 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 24/107 (22%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C +C D + G + V+++ + + Sbjct: 26 IRFVVFTQGCPL-----------RCLYCHNPD----CQEVAGGKQVTVEEIIQEVVKYRS 70 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEP 124 +TGGEPL+Q + + + + G A++T+G I Sbjct: 71 YMRFSNGGITVTGGEPLMQPEFVAEIFRRCRELGIHTALDTSGYIPI 117 >gi|187736032|ref|YP_001878144.1| pyruvate formate-lyase activating enzyme [Akkermansia muciniphila ATCC BAA-835] gi|187426084|gb|ACD05363.1| pyruvate formate-lyase activating enzyme [Akkermansia muciniphila ATCC BAA-835] Length = 259 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 65/178 (36%), Gaps = 33/178 (18%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF SGC S +CR+C DT +V +G + D + I Sbjct: 35 IRFVLFLSGC-----------SLRCRYCHNPDTSYVR----RGRTRSADDVLKEIARYRD 79 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI------EPPQGIDWI 131 + G L+GG+PL Q D +++ K G ++T+G + E D + Sbjct: 80 FLQAAGGGVTLSGGDPLFQPDFAGAVLKGCRKLGLHTCLDTSGHLGVNAGEEMLADTDLV 139 Query: 132 CVSPKAGCDLKIKG--GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL 187 + KA + + G EL+ + + R+ L P LEE L Sbjct: 140 LLDIKAWNPKRYRALTGGELRPTLEFAE-RLASLRKPVWLRYVLVPGVTDNLEEIEEL 196 >gi|134046062|ref|YP_001097548.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanococcus maripaludis C5] gi|132663687|gb|ABO35333.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanococcus maripaludis C5] Length = 242 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 30/125 (24%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF SGCN+ G Q+ + T +++ + ++ + Sbjct: 28 VF--LSGCNMKCGYCQNYETI-------------TTNISEMTAEEVFNGMDLMFAES--- 69 Query: 85 GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSP 135 V++GGEP LQ + + L + ++GF + ++TNGT I++I + Sbjct: 70 ---LVISGGEPTLQPEAVLELAKLAKEKGFPVKLDTNGTNPDLVEKLVLNNLINYIAIDV 126 Query: 136 KAGCD 140 KAG D Sbjct: 127 KAGFD 131 >gi|169835621|ref|ZP_02868809.1| pyruvate formate-lyase activating enzyme [candidate division TM7 single-cell isolate TM7a] Length = 223 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 63/187 (33%), Gaps = 52/187 (27%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 A+F SGCN+ +C +C + R + + Sbjct: 20 AALF--LSGCNM-----------RCGYC----HNPELVLPERLAPSIPVEEAMIFLKSRI 62 Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS 134 V++GGEP + D+P L + + GF++ ++TNGT ID+I + Sbjct: 63 GRLDGVVISGGEPTVNEDLPVLCRMIKSLGFDVKLDTNGTHPDIVRGMVEEGTIDFIAMD 122 Query: 135 ---P-----------------KAGCDLKIKG--GQELKLVFPQVNVSPENYIGF-----D 167 P KA L I G E + + + ++ Sbjct: 123 VKGPLEKYVEIAARPIDLMAIKANVRLMIDSGIGHEFRTTIVREQLEVADFEKIGELVKG 182 Query: 168 FERFSLQ 174 +RF+LQ Sbjct: 183 AKRFALQ 189 >gi|260891514|ref|ZP_05902777.1| pyruvate formate-lyase 1-activating enzyme [Leptotrichia hofstadii F0254] gi|260858897|gb|EEX73397.1| pyruvate formate-lyase 1-activating enzyme [Leptotrichia hofstadii F0254] Length = 254 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 25/135 (18%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C +C DT K ++ I + Sbjct: 31 IRFVLFLQGCPL-----------RCLYCHNVDT---WEIKDKKMVMTAQEVMKEI--LKV 74 Query: 80 TGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKA 137 G + ++GGEPL+Q + L + + G + A++T+G I + + + Sbjct: 75 KGFIKTGGVTVSGGEPLMQPEFLMELFKLCRENGIQTALDTSGYIFSDKAKQVLELVDMV 134 Query: 138 GCDLKIKGGQELKLV 152 D+K ++ K++ Sbjct: 135 LLDIKHINPEKYKIL 149 >gi|330837492|ref|YP_004412133.1| pyruvate formate-lyase activating enzyme [Spirochaeta coccoides DSM 17374] gi|329749395|gb|AEC02751.1| pyruvate formate-lyase activating enzyme [Spirochaeta coccoides DSM 17374] Length = 258 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 34/123 (27%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +C+FC DT + Sbjct: 13 TESFGSVDGPG---------VRFIVFMQGC-----------KMRCQFCHNPDT----WKM 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVE 117 T G ++ +QL E K+G ++GGEPLLQ+D L + +RG I ++ Sbjct: 49 TGGTVFSSEQLLAQAERFRPYWGKDGG-ITISGGEPLLQIDFLLDFTRKAKERGINIVLD 107 Query: 118 TNG 120 T G Sbjct: 108 TCG 110 >gi|291565978|dbj|BAI88250.1| pyruvate formate-lyase activating enzyme [Arthrospira platensis NIES-39] Length = 255 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 24/107 (22%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C +C D + G + V+++ + + Sbjct: 32 IRFVVFTQGCPL-----------RCLYCHNPD----CQEVAGGKQVTVEEIIQEVVKYRS 76 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEP 124 +TGGEPL+Q + + + + G A++T+G I Sbjct: 77 YMRFSNGGITVTGGEPLMQPEFVAEIFRRCRELGIHTALDTSGYIPI 123 >gi|182417137|ref|ZP_02948510.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum 5521] gi|237667537|ref|ZP_04527521.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378979|gb|EDT76485.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum 5521] gi|237655885|gb|EEP53441.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum E4 str. BoNT E BL5262] Length = 236 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC + +C+FC DT + G Y +QL + IE+ Sbjct: 24 VF--FQGC-----------ALRCKFCHNPDT----WTPSGGEEYTAEQLVNKIEKFKSYF 66 Query: 82 EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120 G +GG+PL Q + L ++ R ++T+G Sbjct: 67 AASGGGVTFSGGDPLRQPEFLLEVLKLCKSRNINTCLDTSG 107 >gi|167766973|ref|ZP_02439026.1| hypothetical protein CLOSS21_01490 [Clostridium sp. SS2/1] gi|167710948|gb|EDS21527.1| hypothetical protein CLOSS21_01490 [Clostridium sp. SS2/1] gi|291559683|emb|CBL38483.1| pyruvate formate-lyase 1-activating enzyme [butyrate-producing bacterium SSC/2] Length = 244 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 23/101 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC + +CRFC DT + + G Y ++L I Sbjct: 24 IF--LQGC-----------ALRCRFCHNPDT----WELSGGTEYTPEKLVAKIRRFKPYF 66 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +++G +GGEPLLQ D ++ G ++T G Sbjct: 67 KEDGG-VTFSGGEPLLQPDFLKETLKLCKNEGIHTCIDTAG 106 >gi|170756235|ref|YP_001783216.1| radical SAM domain-containing protein [Clostridium botulinum B1 str. Okra] gi|169121447|gb|ACA45283.1| radical SAM domain protein [Clostridium botulinum B1 str. Okra] Length = 278 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 62/175 (35%), Gaps = 38/175 (21%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDT--------------DF 54 F ++ G G A+F F GCN + + C+ C T D+ Sbjct: 12 FSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDY 66 Query: 55 VGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 V K G R + ++I+E T ++GGE LQ Sbjct: 67 VKWDENKCKNCGLCLKKCKNNCGPRNKYMSVGEIIKEILKTKPFISG-ITVSGGECTLQR 125 Query: 100 D--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152 D + L + + G I V+TNG+++ + + D+K E K++ Sbjct: 126 DFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTELMDMVMLDVKSFDSDEHKML 180 >gi|239623045|ref|ZP_04666076.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridiales bacterium 1_7_47_FAA] gi|239522412|gb|EEQ62278.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridiales bacterium 1_7_47FAA] Length = 232 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 19/98 (19%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F GCN +C FC + + G Y +++ D + ++ E Sbjct: 21 TIF--TGGCNF-----------RCPFC-HNSELLDSGAGEDYTEEEIFDFLHKRRGILEG 66 Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +TGGEP LQ D+ I+ + G + ++TNG Sbjct: 67 ----VCITGGEPTLQPDLEDFIRRIRSMGLAVKLDTNG 100 >gi|169349840|ref|ZP_02866778.1| hypothetical protein CLOSPI_00578 [Clostridium spiroforme DSM 1552] gi|169293408|gb|EDS75541.1| hypothetical protein CLOSPI_00578 [Clostridium spiroforme DSM 1552] Length = 249 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 27/120 (22%) Query: 8 EIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 E F ++ G G R GC L +C++C + Sbjct: 13 ESFGSVDGPG---------VRYILFLHGCPL-----------RCKYCHNPDTWANSKETM 52 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121 + + + EG ++GGEPLLQ+D + L + K G ++T+G Sbjct: 53 EMTPQEALEKALKYKTYWGNEGG-ITISGGEPLLQIDFLIELFKLAKKEGVNTCIDTSGA 111 >gi|227486366|ref|ZP_03916682.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus lactolyticus ATCC 51172] gi|227235547|gb|EEI85562.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus lactolyticus ATCC 51172] Length = 239 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 22/105 (20%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77 G VF SGC L +C FC DT + G V+++ Sbjct: 17 GIRTVFF-LSGCPL-----------RCVFCHNPDTQSLDY----GRDVTVEEIVKRALRM 60 Query: 78 WITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120 + G L+GGEPL L I+AL+K +AV+T+G Sbjct: 61 KPYFKNGGG-VTLSGGEPLASGAFVLETIRALHKEAIHVAVDTSG 104 >gi|315427941|dbj|BAJ49532.1| Fe-S oxidoreductase [Candidatus Caldiarchaeum subterraneum] Length = 564 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L + +R C +C F + +DQ+ +++++ G +TGG Sbjct: 106 LSNLVITNRCDLHCWYC--FFYAEKAGYIYEPTLDQIREMVKQLKAERPVPGNSVQITGG 163 Query: 94 EPLLQVDVP-LIQALNKRGF-EIAVETNG 120 EP L+ D+P +I+ L + G I + TNG Sbjct: 164 EPCLRDDLPEIIRILKEEGVDHIQLNTNG 192 >gi|315426306|dbj|BAJ47947.1| Fe-S oxidoreductase [Candidatus Caldiarchaeum subterraneum] Length = 564 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L + +R C +C F + +DQ+ +++++ G +TGG Sbjct: 106 LSNLVITNRCDLHCWYC--FFYAEKAGYIYEPTLDQIREMVKQLKAERPVPGNSVQITGG 163 Query: 94 EPLLQVDVP-LIQALNKRGF-EIAVETNG 120 EP L+ D+P +I+ L + G I + TNG Sbjct: 164 EPCLRDDLPEIIRILKEEGVDHIQLNTNG 192 >gi|111222773|ref|YP_713567.1| MoaA/nifB/pqqE family protein [Frankia alni ACN14a] gi|111150305|emb|CAJ62002.1| putative MoaA / nifB / pqqE family protein; putative SAM binding domain [Frankia alni ACN14a] Length = 333 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C R V+Q ++E L Sbjct: 38 CNLAC--------EGCG----KIQHPADVLKQRMPVEQALAAVDECG------APVVCLA 79 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ V +++ L KR + + TN + P+ ID + SP + I G +E Sbjct: 80 GGEPLMHPQVEKIVEGLVKRKKFVYLCTN-ALLIPKKIDKLTPSPYLSFAVHIDGLEE 136 >gi|254444448|ref|ZP_05057924.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Verrucomicrobiae bacterium DG1235] gi|198258756|gb|EDY83064.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Verrucomicrobiae bacterium DG1235] Length = 269 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 16/97 (16%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRY 87 CNL C C + + I T Y++ I+ + E Sbjct: 56 TQRCNLNCPS--------C--CKSQLIPIPTTDAAENYDIKDCFKFIDSRIGLVESA--- 102 Query: 88 CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 V+TGGEPLL D+P L+ + KRG + ++TNGT+ Sbjct: 103 -VITGGEPLLHHDLPALLAHIKKRGLSVKLDTNGTLP 138 >gi|237710986|ref|ZP_04541467.1| radical SAM domain-containing protein [Bacteroides sp. 9_1_42FAA] gi|265750576|ref|ZP_06086639.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|229454830|gb|EEO60551.1| radical SAM domain-containing protein [Bacteroides sp. 9_1_42FAA] gi|263237472|gb|EEZ22922.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 367 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 9/82 (10%) Query: 47 CRF-CDTDFVGIQGTK----GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 C F CD ++ ++ ++ GG ++++ + ++ G + +LTGGEPLL D Sbjct: 35 CNFRCDMCYIRMEKSQAEKRGGLRSIEEWLHIADQLQEIG---TLFILLTGGEPLLYPDF 91 Query: 102 -PLIQALNKRGFEIAVETNGTI 122 L L ++GF + + TN T+ Sbjct: 92 KELYIRLKEKGFILTINTNATL 113 >gi|303239826|ref|ZP_07326349.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Acetivibrio cellulolyticus CD2] gi|302592536|gb|EFL62261.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Acetivibrio cellulolyticus CD2] Length = 227 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 24/118 (20%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCN+ +R ++G + D++ +E++ E V+ Sbjct: 26 GCNMDCFYCHNR------------ALVEGGHENITDADEVLSFLEKRKGFLEG----VVV 69 Query: 91 TGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSPKAGCD 140 +GGEP LQ +P ++ + + G+ I ++TNGT ID+I + KA + Sbjct: 70 SGGEPTLQKGLLPFLKDVKRLGYSIKLDTNGTNPDVVENVLHKGLIDYIAMDFKAPYE 127 >gi|255528600|ref|ZP_05395368.1| pyruvate formate-lyase activating enzyme [Clostridium carboxidivorans P7] gi|296185843|ref|ZP_06854249.1| pyruvate formate-lyase 1-activating enzyme [Clostridium carboxidivorans P7] gi|255507704|gb|EET84176.1| pyruvate formate-lyase activating enzyme [Clostridium carboxidivorans P7] gi|296049511|gb|EFG88939.1| pyruvate formate-lyase 1-activating enzyme [Clostridium carboxidivorans P7] Length = 240 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 25/102 (24%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC S +C +C DT G ++L I Sbjct: 24 VFM--QGC-----------SLRCAYCHNPDT----WNFQGGTEITPEELVKKIARFKPYF 66 Query: 82 EKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETNG 120 + G +GGEPL+Q D LI+ L ++G ++T G Sbjct: 67 KNGGG-VTFSGGEPLMQPDF-LIETLKLCKEQGIHTTIDTAG 106 >gi|154484052|ref|ZP_02026500.1| hypothetical protein EUBVEN_01761 [Eubacterium ventriosum ATCC 27560] gi|149735094|gb|EDM50980.1| hypothetical protein EUBVEN_01761 [Eubacterium ventriosum ATCC 27560] Length = 255 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 55/159 (34%), Gaps = 36/159 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC + +C +C DT G VD+L E + Sbjct: 24 VF--FKGCPM-----------RCAYCHNPDT----WSMEGGTEMTVDELLK--EYETKKF 64 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139 + TGGEP++Q+D L +KRG ++T+G + P Sbjct: 65 FYQSGGITATGGEPMVQIDFLTELFTEAHKRGIHTCLDTSG----------VTFRP--DD 112 Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178 + +L V V + ++ + + QP D Sbjct: 113 PENLMKVDKLLEVTDLVMLDIKHINPQEHLKLCKQPNDN 151 >gi|326790187|ref|YP_004308008.1| pyruvate formate-lyase activating enzyme [Clostridium lentocellum DSM 5427] gi|326540951|gb|ADZ82810.1| pyruvate formate-lyase activating enzyme [Clostridium lentocellum DSM 5427] Length = 241 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 22/108 (20%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC L +C++C DT + G + ++L I + Sbjct: 23 VF--TQGCPL-----------RCKYCHNPDT----WKLQDGNEADTEELITDILKYKSFM 65 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQG 127 + ++GGEP LQ D L + G ++T+G ++ Sbjct: 66 KASNGGVTVSGGEPFLQADFVRDLFIKCKENGLHTTIDTSGYVDIENA 113 >gi|157363297|ref|YP_001470064.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermotoga lettingae TMO] gi|157313901|gb|ABV33000.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermotoga lettingae TMO] Length = 233 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 20/102 (19%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 VF SGCNL +C +C ++ V + + ++ I+ Sbjct: 21 TVFI--SGCNL-----------RCPYCHNSMLVTVDKSLAQT-KWKEVLAWIKSNRKL-- 64 Query: 83 KEGRYCVLTGGEPLLQVDVPLIQAL-NKRGFEIAVETNGTIE 123 +TGGEP L+ D+ L+ L + G ++ ++TNGT Sbjct: 65 --INAVCITGGEPTLRKDLYLMIHLAKELGIKVKLDTNGTQP 104 >gi|304314308|ref|YP_003849455.1| MoaA related protein [Methanothermobacter marburgensis str. Marburg] gi|302587767|gb|ADL58142.1| MoaA related protein [Methanothermobacter marburgensis str. Marburg] Length = 227 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 20/93 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR+C Y+ +++AD + I+ E+ ++ Sbjct: 22 CNL-----------RCRYC-----FFTPRNCREYDAERIADRV--LRISSEEGIDSVLIA 63 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 GGEP LQ D+P +AL R + + TNGT Sbjct: 64 GGEPTLQRDLPEFTEAL-SRDLHVTISTNGTRW 95 >gi|220929980|ref|YP_002506889.1| pyruvate formate-lyase activating enzyme [Clostridium cellulolyticum H10] gi|220000308|gb|ACL76909.1| pyruvate formate-lyase activating enzyme [Clostridium cellulolyticum H10] Length = 240 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 27/147 (18%) Query: 8 EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F T+ G G VF GC L +C++C D Sbjct: 11 ETFGTVDGPGIRFI----VF--LKGCPL-----------RCKYCHNRD----AWSSEGAK 49 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGT 121 Y+ ++ I++ + ++GGEPL+Q + L + + G AV+T+G Sbjct: 50 LYSPQEVLKEIQKYRNFIDASHGGITVSGGEPLIQHEFVKELFKLCREAGIHTAVDTSGY 109 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQE 148 + D + + DLK Q+ Sbjct: 110 VNVEDVKDTLEYTDLVLLDLKQANAQK 136 >gi|167037076|ref|YP_001664654.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115491|ref|YP_004185650.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855910|gb|ABY94318.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928582|gb|ADV79267.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 228 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 30/158 (18%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 VF SGCN +C +C ++ G + + D ++++ E Sbjct: 19 ATVFV--SGCNF-----------KCPYCHNSYLIQIRE--GIRSEKEFFDYLKKRANLIE 63 Query: 83 KEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS 134 +TGGEP L + I+ + FE+ ++TNG+ +D+I + Sbjct: 64 G----VCITGGEPTLWKGLKDFIKNIKDLNFEVKLDTNGSRPQVLENLLDEGLLDYIAMD 119 Query: 135 PKAGCD---LKIKGGQELKLVFPQVNVSPENYIGFDFE 169 KA + + +K +E+ V V + + I ++F Sbjct: 120 IKAPIEKYGIFLKNKKEIDNVQKSVEIIKNSDIDYEFR 157 >gi|268610302|ref|ZP_06144029.1| pyruvate formate-lyase activating enzyme [Ruminococcus flavefaciens FD-1] Length = 247 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 46/130 (35%), Gaps = 28/130 (21%) Query: 7 KEIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 E F T+ G G VF F GC L +CR+C + G+ Sbjct: 8 TESFGTVDGPGVRFV----VF--FQGCPL-----------RCRYC----HNPDTWEFGKG 46 Query: 66 NVDQLADLIEEQWITGEK-EGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN-GT 121 DL++E E + TGGEPL Q L +G ++T+ G Sbjct: 47 TERTAEDLMKEYDSYKEFLKSGGITATGGEPLAQPEFLAELFSLAKSKGVHTCLDTSAGV 106 Query: 122 IEPP--QGID 129 P + ID Sbjct: 107 YSPEHHEAID 116 >gi|77920322|ref|YP_358137.1| pyruvate-formate lyase-activating enzyme [Pelobacter carbinolicus DSM 2380] gi|77546405|gb|ABA89967.1| pyruvate-formate lyase-activating enzyme [Pelobacter carbinolicus DSM 2380] Length = 231 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 18/100 (18%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF F GCNL C FC + + Y ++ L + +E++ + Sbjct: 22 VF--FGGCNL-----------SCPFCHNPDLVQAPDRLPDYPLEPLFEELEQRRSFIDG- 67 Query: 85 GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 V++GGEP L D+ P ++ + + G + ++TNG + Sbjct: 68 ---VVISGGEPTLYPDLIPFMRRIKQLGLMVKLDTNGLLP 104 >gi|302384615|ref|YP_003820437.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium saccharolyticum WM1] gi|302195243|gb|ADL02814.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium saccharolyticum WM1] Length = 231 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 30/128 (23%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG--IQGTKGGRYNVDQLADLIEEQWIT 80 VF GCN +C FC I Y+ ++L + + + Sbjct: 20 ATVF--LGGCNF-----------RCPFC---HNSGLIGSEAKSEYSKEELLNFLSRRKGI 63 Query: 81 GEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG-------TIEPPQGIDWIC 132 E +TGGEP L D+ I+ + + G+ I ++TNG + +D++ Sbjct: 64 LEG----VCITGGEPTLSEDLESFIRNIRELGYLIKLDTNGYRPDVLKRLAANGLLDYVA 119 Query: 133 VSPKAGCD 140 + KAG D Sbjct: 120 MDIKAGRD 127 >gi|325843173|ref|ZP_08167859.1| glycine radical enzyme activase, YjjW family [Turicibacter sp. HGF1] gi|325489417|gb|EGC91787.1| glycine radical enzyme activase, YjjW family [Turicibacter sp. HGF1] Length = 275 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 57/180 (31%), Gaps = 47/180 (26%) Query: 1 MKLYSIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ------------ 46 MK Y + +I F ++ G G A+F GCN + + Sbjct: 1 MKGY-LNKIIPFSSVDGPGNRT---AIF--LQGCNFDCVYCHNPETINHCINCSMCVSAC 54 Query: 47 ------------------CRFCD--TDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEG 85 C CD T T + D + + I + Sbjct: 55 PVQALSRVDRLVKFDVSKCVECDACTKKCHRNSTPKYKLLTADDIMNDIMNYRPFIQG-- 112 Query: 86 RYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143 ++GGE LQ + L + + G ++TNG+ + D + ++ D+K+ Sbjct: 113 --ITVSGGECTLQAPFLIELFKKAKEAGLTCFIDTNGSTDLSLHHDLMSLTDGVMLDVKV 170 >gi|218135329|ref|ZP_03464133.1| hypothetical protein BACPEC_03234 [Bacteroides pectinophilus ATCC 43243] gi|217990714|gb|EEC56725.1| hypothetical protein BACPEC_03234 [Bacteroides pectinophilus ATCC 43243] Length = 248 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 34/122 (27%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F ++ G G RF GC++ +C+FC DT Sbjct: 8 ESFGSVDGPG---------VRFVIFTQGCHM-----------RCQFCHNPDT----WNME 43 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 G + D L K ++GGEPLLQ+D + L +G ++T Sbjct: 44 DGEEMSADDLLKQALRYKSY-WKNKGGITVSGGEPLLQMDFLIELFTKAKAKGVNTTLDT 102 Query: 119 NG 120 +G Sbjct: 103 SG 104 >gi|291287831|ref|YP_003504647.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Denitrovibrio acetiphilus DSM 12809] gi|290884991|gb|ADD68691.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Denitrovibrio acetiphilus DSM 12809] Length = 229 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 60/155 (38%), Gaps = 33/155 (21%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI-TGEKEGRY 87 F+GCNL +CR+C N + +EE K+ Sbjct: 27 FNGCNL-----------RCRYC---------HNPELVNSALGENRLEEFLSSLEGKDIEG 66 Query: 88 CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSPKAGC 139 ++GGEPL D+P ++ L RGF + ++TNG+ D++ V KA Sbjct: 67 VAVSGGEPLFLPDMPEFLRTLKDRGFLVKLDTNGSYPGRLERVCGEGLADFVSVDLKAFN 126 Query: 140 DLKIK----GGQELKLVFPQVNVSPENYIGFDFER 170 D +K + ++V E+ +GF+ Sbjct: 127 DSDVKEITRSNYGIDKFIKTIDVLREHKVGFEVRH 161 >gi|257126654|ref|YP_003164768.1| pyruvate formate-lyase activating enzyme [Leptotrichia buccalis C-1013-b] gi|257050593|gb|ACV39777.1| pyruvate formate-lyase activating enzyme [Leptotrichia buccalis C-1013-b] Length = 254 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 25/135 (18%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C +C DT K ++ I + Sbjct: 31 IRFVLFLQGCPL-----------RCLYCHNVDT---WEIKDKKMIMTASEVMKEI--LKV 74 Query: 80 TGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKA 137 G + ++GGEPL+Q + L + + G + A++T+G I + + + Sbjct: 75 RGFIKTGGVTVSGGEPLMQPEFLMELFKLCRENGIQTALDTSGYIFSDKAKQVLELVDMV 134 Query: 138 GCDLKIKGGQELKLV 152 D+K ++ K++ Sbjct: 135 LLDIKHINPEKYKIL 149 >gi|224540997|ref|ZP_03681536.1| hypothetical protein CATMIT_00148 [Catenibacterium mitsuokai DSM 15897] gi|224526052|gb|EEF95157.1| hypothetical protein CATMIT_00148 [Catenibacterium mitsuokai DSM 15897] Length = 308 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 51/149 (34%), Gaps = 54/149 (36%) Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSA--------------QCR------------ 48 GEG VF F GC L Q+ CR Sbjct: 27 GEGLRT---TVF--FKGCPLRCRWCQNPEGLLPQRKPIYLENKCMHCRNCEKQGAGKIVY 81 Query: 49 ----------------FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 +C TD + + Y++++L D + E + + G ++G Sbjct: 82 QDRPVFIEDDLDEVFKYCPTDAIQYDSSY---YSLEELVDKVMEDEVFFKYGGG-VTVSG 137 Query: 93 GEPLLQVDVPLIQALNKRGFEIA--VETN 119 GEP +Q + LIQ L + ++ +ET+ Sbjct: 138 GEPFMQQE-KLIQLLKELHPKVHTAIETS 165 >gi|52080502|ref|YP_079293.1| putative pyruvate formate-lyase-activating enzyme [Bacillus licheniformis ATCC 14580] gi|52785882|ref|YP_091711.1| hypothetical protein BLi02131 [Bacillus licheniformis ATCC 14580] gi|319645536|ref|ZP_07999768.1| hypothetical protein HMPREF1012_00801 [Bacillus sp. BT1B_CT2] gi|52003713|gb|AAU23655.1| putative Pyruvate formate-lyase-activating enzyme [Bacillus licheniformis ATCC 14580] gi|52348384|gb|AAU41018.1| putative protein [Bacillus licheniformis ATCC 14580] gi|317392422|gb|EFV73217.1| hypothetical protein HMPREF1012_00801 [Bacillus sp. BT1B_CT2] Length = 252 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 25/118 (21%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64 E F T+ G G R VF GC +C+FC DT +G G + Sbjct: 9 ETFGTVDGPGI---RYVVF--TQGC-----------LMRCQFCHNADTWEIGT----GKQ 48 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 V ++ ++ + G ++GGEPLLQ+ + L +A G A++++G Sbjct: 49 MTVSEIVQDVQHYLPFIQSSGGGITVSGGEPLLQLPFLIELFKACKSLGIHTALDSSG 106 >gi|16272464|ref|NP_438678.1| hypothetical protein HI0520 [Haemophilus influenzae Rd KW20] gi|260580967|ref|ZP_05848790.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|1175257|sp|P44743|Y520_HAEIN RecName: Full=Uncharacterized protein HI_0520 gi|1573503|gb|AAC22178.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|260092326|gb|EEW76266.1| conserved hypothetical protein [Haemophilus influenzae RdAW] Length = 262 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 43/194 (22%) Query: 3 LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51 + ++ EIF+ L QG R ++F GC L C +C Sbjct: 1 MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42 Query: 52 TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109 + T+ + + EQ + R ++GGEP + VPL +AL Sbjct: 43 NPETIPRYTESAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99 Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ------ELKL---VFPQVNVSP 160 +G ++++G E + I V+ K DLK +G + K + PQ + Sbjct: 100 QGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLKGEGIGLQTLCFDRKNQAGIVPQQVIPE 159 Query: 161 ENYIGFDFERFSLQ 174 +I D +LQ Sbjct: 160 RLHIKNDKLERNLQ 173 >gi|145640496|ref|ZP_01796080.1| purine nucleoside phosphorylase [Haemophilus influenzae R3021] gi|145275082|gb|EDK14944.1| purine nucleoside phosphorylase [Haemophilus influenzae 22.4-21] Length = 262 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 73/195 (37%), Gaps = 45/195 (23%) Query: 3 LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51 + ++ EIF+ L QG R ++F GC L C +C Sbjct: 1 MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42 Query: 52 TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109 + T+ + + EQ + R ++GGEP + VPL +AL Sbjct: 43 NPETIPRYTESAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99 Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL----------VFPQVNVS 159 +G ++++G E + I V+ K DLK +G L++ + PQ + Sbjct: 100 KGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLKGEGIG-LQILCFDRKNQAGIVPQQVIL 158 Query: 160 PENYIGFDFERFSLQ 174 +I D +LQ Sbjct: 159 ERLHIKNDKLERNLQ 173 >gi|209524594|ref|ZP_03273142.1| pyruvate formate-lyase activating enzyme [Arthrospira maxima CS-328] gi|209495052|gb|EDZ95359.1| pyruvate formate-lyase activating enzyme [Arthrospira maxima CS-328] Length = 249 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 24/107 (22%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C +C D + G + +V+++ + + Sbjct: 26 IRFVVFTQGCPL-----------RCLYCHNPD----CQEVAGGQQVSVEEIIQQVVKYRS 70 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEP 124 +TGGEPL+Q + + + + G A++T+G I Sbjct: 71 YMRFSNGGITVTGGEPLMQPEFVAEIFRRCRELGIHTALDTSGYIPL 117 >gi|150400948|ref|YP_001324714.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanococcus aeolicus Nankai-3] gi|150013651|gb|ABR56102.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanococcus aeolicus Nankai-3] Length = 245 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 28/125 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF SGCN+ C +C + T+ + ++ D I+ + Sbjct: 22 VF--LSGCNML-----------CGYCHNYEHMLDNTRNIDMSPKEVFDKIDLIFADA--- 65 Query: 85 GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT-IEPPQG------IDWICVSP 135 V++GGEP LQ + L + G + ++TNGT ++ + ID+I + Sbjct: 66 ---LVISGGEPTLQPEGVKELCKLAKNEGLAVKLDTNGTSVDIVKDIIDNKLIDYIALDV 122 Query: 136 KAGCD 140 K G D Sbjct: 123 KCGFD 127 >gi|326202609|ref|ZP_08192477.1| pyruvate formate-lyase activating enzyme [Clostridium papyrosolvens DSM 2782] gi|325987193|gb|EGD48021.1| pyruvate formate-lyase activating enzyme [Clostridium papyrosolvens DSM 2782] Length = 240 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 27/119 (22%) Query: 8 EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F T+ G G VF GC L +C++C D Sbjct: 11 ETFGTVDGPGIRFI----VF--LKGCPL-----------RCKYCHNRD----AWSSEGAK 49 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 Y ++ + + E ++GGEPL+Q D L + + G AV+T+G Sbjct: 50 LYTPQEVMKELLKYKNFIEASHGGITVSGGEPLIQQDFVRELFKLCREAGIHTAVDTSG 108 >gi|145637441|ref|ZP_01793100.1| hypothetical protein CGSHiHH_06086 [Haemophilus influenzae PittHH] gi|145269387|gb|EDK09331.1| hypothetical protein CGSHiHH_06086 [Haemophilus influenzae PittHH] Length = 262 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 43/194 (22%) Query: 3 LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51 + ++ EIF+ L QG R ++F GC L C +C Sbjct: 1 MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42 Query: 52 TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109 + T+ + + EQ + R ++GGEP + VPL +AL Sbjct: 43 NPETIPRYTESAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99 Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ------ELKL---VFPQVNVSP 160 +G ++++G E + I V+ K DLK +G + K + PQ + Sbjct: 100 QGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLKGEGIGLQTLCFDRKNQAGIVPQQVIPK 159 Query: 161 ENYIGFDFERFSLQ 174 +I D +LQ Sbjct: 160 RLHIKNDKLERNLQ 173 >gi|260582776|ref|ZP_05850563.1| pyruvate-formate lyase-activating enzyme [Haemophilus influenzae NT127] gi|260094226|gb|EEW78127.1| pyruvate-formate lyase-activating enzyme [Haemophilus influenzae NT127] Length = 262 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 43/194 (22%) Query: 3 LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51 + ++ EIF+ L QG R ++F GC L C +C Sbjct: 1 MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42 Query: 52 TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109 + T+ + + EQ + R ++GGEP + VPL +AL Sbjct: 43 NPETIPRYTESAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99 Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ------ELKL---VFPQVNVSP 160 +G ++++G E + I V+ K DLK +G + K + PQ + Sbjct: 100 QGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLKGEGIGLQTLCFDRKNQAGIVPQQVILE 159 Query: 161 ENYIGFDFERFSLQ 174 +I D +LQ Sbjct: 160 RLHIKNDKLERNLQ 173 >gi|257470672|ref|ZP_05634762.1| pyruvate-formate lyase-activating enzyme [Fusobacterium ulcerans ATCC 49185] gi|317064878|ref|ZP_07929363.1| pyruvate-formate lyase-activating enzyme [Fusobacterium ulcerans ATCC 49185] gi|313690554|gb|EFS27389.1| pyruvate-formate lyase-activating enzyme [Fusobacterium ulcerans ATCC 49185] Length = 243 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 65/178 (36%), Gaps = 36/178 (20%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 E F T+ G G RF GC L +C+FC + Sbjct: 11 ESFGTVDGPG---------IRFVLFLQGCPL-----------RCKFCHNPDTWNMSEEKI 50 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121 + + + + + K+G +TGGEPLLQ D + L + + G V+T+G Sbjct: 51 KEEATETFEKVRKYKGYFGKKGGL-TVTGGEPLLQADFVLELFKLCKEDGINTVVDTSGY 109 Query: 122 I------EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173 I E + D + + KA + K EL V + + Y+ ++ + Sbjct: 110 IFNEKVKEVLEYTDLVLLDIKAIDEKVYK---ELTGVELENTLKFAQYLKEKGKKVWI 164 >gi|51850059|dbj|BAD42364.1| putative benzylsuccinate synthase activating enzyme [Magnetospirillum sp. TS-6] Length = 319 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 54/173 (31%), Gaps = 60/173 (34%) Query: 1 MKLYSIKEI--FLTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------Q 46 MK+ I EI F +LQ G G +F GC L + + + Sbjct: 1 MKIPLITEIQRF-SLQDGPGIRT---TIF--LKGCPLRCPWCHNPETQDTRREMFYYENR 54 Query: 47 CRFC---------------DTD-----------------------FVGIQGTKGGRYNVD 68 C C DT +G G VD Sbjct: 55 CVGCGRCVAVCSTGASTLVDTGGKSPTLVVNRDKCDRCLRCAAVCLTEARGISGQAMTVD 114 Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 ++ + G L+GG+PL+ + + L + L+ G +A+ET+ Sbjct: 115 EILREALSDKPFYKNSGGGVTLSGGDPLMYPEFVLELARRLHDEGVHLAMETS 167 >gi|164687599|ref|ZP_02211627.1| hypothetical protein CLOBAR_01240 [Clostridium bartlettii DSM 16795] gi|164603373|gb|EDQ96838.1| hypothetical protein CLOBAR_01240 [Clostridium bartlettii DSM 16795] Length = 248 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 27/123 (21%) Query: 8 EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F T+ G G + +F F GC L +C++C DT + G Sbjct: 10 ETFGTVDGPGIRYI----IF--FQGCPL-----------RCKYCHNRDT----WKTNCGK 48 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121 Y VD+LA I + + G +GGE LQ + L + G ++T G Sbjct: 49 EYTVDELAQDIMKYQTYMQFSGGGVTASGGEATLQAEFVTELFAKCKELGIHTCLDTAGF 108 Query: 122 IEP 124 ++ Sbjct: 109 VDI 111 >gi|262038411|ref|ZP_06011785.1| pyruvate formate-lyase 1-activating enzyme [Leptotrichia goodfellowii F0264] gi|261747506|gb|EEY34971.1| pyruvate formate-lyase 1-activating enzyme [Leptotrichia goodfellowii F0264] Length = 241 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 25/103 (24%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C +C DT K +++ I + Sbjct: 19 IRFVLFMQGCPL-----------RCLYCHNVDT---WNVKDKKFMMTPEEVMKEI--LKV 62 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 G ++GGEPLLQ + L + + AV+T+G Sbjct: 63 KGFIRTGGVTVSGGEPLLQPEFITELFKLCKENDIHTAVDTSG 105 >gi|114566578|ref|YP_753732.1| pyruvate formate lyase activating enzyme [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337513|gb|ABI68361.1| pyruvate formate lyase activating enzyme [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 246 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 25/122 (20%) Query: 5 SIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 I I F TL G G VF GC+L +C++C DT ++ Sbjct: 4 RIHSIDTFSTLDGPGIRT---VVFM--QGCHL-----------RCKYCHNPDT--WELKS 45 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALN-KRGFEIAVE 117 Y+ ++L ++I G +GGEPLL D + + L + A++ Sbjct: 46 LSAQEYSPEELMEVIRRSKPYFIASGGGLTFSGGEPLLHDDFIKAVFLLCREENISTAID 105 Query: 118 TN 119 T+ Sbjct: 106 TS 107 >gi|91225254|ref|ZP_01260422.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus 12G01] gi|91189893|gb|EAS76165.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus 12G01] Length = 246 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 53/162 (32%), Gaps = 36/162 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT G V+++ + Sbjct: 25 VF--LQGC-----------LMRCKYCHNRDT----WDTHDGKEVTVEEIISEAKSYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWICVS 134 G +GGE +LQ + +A G ++TNG T + +D Sbjct: 68 NASGGGVTCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYVRKHTDVIDEVLD----- 122 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176 DL + + +K Q + N DF R LQ + Sbjct: 123 ---ATDLVMLDIKHMKDEVHQDLIGVSNRRTLDFAR-YLQKI 160 >gi|293375016|ref|ZP_06621309.1| putative pyruvate formate-lyase-activating enzyme [Turicibacter sanguinis PC909] gi|292646354|gb|EFF64371.1| putative pyruvate formate-lyase-activating enzyme [Turicibacter sanguinis PC909] Length = 275 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 57/180 (31%), Gaps = 47/180 (26%) Query: 1 MKLYSIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ------------ 46 MK Y + +I F ++ G G A+F GCN + + Sbjct: 1 MKGY-LNKIIPFSSVDGPGNRT---AIF--LQGCNFECVYCHNPETINHCINCSMCVSAC 54 Query: 47 ------------------CRFCD--TDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEG 85 C CD T T + D + + I + Sbjct: 55 PVQALSRVDRLVKFDVSKCVECDACTKKCHRNSTPKYKLLTADDIMNDIMNYRPFIQG-- 112 Query: 86 RYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143 ++GGE LQ + L + + G ++TNG+ + D + ++ D+K+ Sbjct: 113 --ITVSGGECTLQAPFLIELFKKAKEAGLTCFIDTNGSTDLSLQHDLMSLTDGVMLDVKV 170 >gi|83592610|ref|YP_426362.1| radical SAM family protein [Rhodospirillum rubrum ATCC 11170] gi|83575524|gb|ABC22075.1| Radical SAM [Rhodospirillum rubrum ATCC 11170] Length = 232 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 39/125 (31%), Gaps = 24/125 (19%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF R GC +C +C G G R D + + + Sbjct: 23 VATVFLR--GCP-----------WRCPYC-----HNPGLLGARDPSDPAWEDVFGFLQSR 64 Query: 82 EKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSP 135 V +GGEP Q + I A GF + + T G +DW+ Sbjct: 65 RGLLDGVVFSGGEPTTQGGLGAAIDAARGLGFRVGLHTGGAFPDRLAALLPHLDWVGFDV 124 Query: 136 KAGCD 140 KA D Sbjct: 125 KAPFD 129 >gi|251799217|ref|YP_003013948.1| pyruvate formate-lyase activating enzyme [Paenibacillus sp. JDR-2] gi|247546843|gb|ACT03862.1| pyruvate formate-lyase activating enzyme [Paenibacillus sp. JDR-2] Length = 244 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 57/152 (37%), Gaps = 29/152 (19%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC + QC+FC DT G + VD + + IE Sbjct: 19 IRFVLFMQGC-----------ALQCQFCHNPDT----WDTAAGRQVTVDDILEEIEPYLP 63 Query: 80 TGEKEGRYCVLTGGEPLLQVDVPLIQAL-----NKRGFEIAVETNGTIEPPQGIDWICVS 134 G +TGGEP LQ P + AL K G A++++G +P + + + Sbjct: 64 YYRGSGGGITVTGGEPTLQA--PFVAALFKACKEKYGLHTALDSSGFCDPSHASELMNDT 121 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166 DLK + + + Q N ++ + Sbjct: 122 DLVLLDLKQIDRDKHERLTSQPNDRILHFAKW 153 >gi|18313817|ref|NP_560484.1| molybdenum cofactor biosynthesis protein (moaA) [Pyrobaculum aerophilum str. IM2] gi|18161379|gb|AAL64666.1| molybdenum cofactor biosynthesis protein (moaA) [Pyrobaculum aerophilum str. IM2] Length = 254 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 18/145 (12%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL G + T FV T G ++A + E I K + + Sbjct: 46 GCNLRCGMCWAWRN-------TSFVL---TAGAWMAPHEVAARLRE--IAKSKGFQQVRI 93 Query: 91 TGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 +GGEPL+ + +I L++ + VETNG + + P A + IKG Sbjct: 94 SGGEPLIAPEHLLEVIDLLSE--YTFVVETNGVLINRNLAKELASRPNAVVRVSIKGATP 151 Query: 149 LKLVFPQVNVSPENYIGFDFERFSL 173 + V ++ +SP Y E L Sbjct: 152 EEFV--KITMSPSFYFYRQLEALRL 174 >gi|325263807|ref|ZP_08130540.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp. D5] gi|324030845|gb|EGB92127.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp. D5] Length = 288 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 7/99 (7%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQL-ADLIEEQWITGE---KEGR 86 C + R++ A CR C + TKG R + +++ D + E+ I +G Sbjct: 57 CPHHAIRDKQLDRAVCRECKGRECVTEHRTKGIRLSYEEIEVDALVEEIIGNSPMFYDGG 116 Query: 87 YCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIE 123 TGGE LQ D L ++ L G AVETNG Sbjct: 117 GVTFTGGEATLQFDELLEALKRLTAAGIHTAVETNGAHP 155 >gi|254229008|ref|ZP_04922429.1| pyruvate formate-lyase 1-activating enzyme [Vibrio sp. Ex25] gi|262394749|ref|YP_003286603.1| pyruvate formate-lyase activating enzyme [Vibrio sp. Ex25] gi|151938476|gb|EDN57313.1| pyruvate formate-lyase 1-activating enzyme [Vibrio sp. Ex25] gi|262338343|gb|ACY52138.1| pyruvate formate-lyase activating enzyme [Vibrio sp. Ex25] Length = 246 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 53/162 (32%), Gaps = 36/162 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT G V+++ + Sbjct: 25 VF--LQGC-----------LMRCKYCHNRDT----WDTHDGKEVTVEEIISEAKSYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWICVS 134 G +GGE +LQ + +A G ++TNG T + +D Sbjct: 68 NASGGGVTCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYVRKHTDVIDEVLD----- 122 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176 DL + + +K Q + N DF R LQ + Sbjct: 123 ---ATDLVMLDIKHMKDEVHQDLIGVSNRRTLDFAR-YLQKI 160 >gi|227503993|ref|ZP_03934042.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium striatum ATCC 6940] gi|227199387|gb|EEI79435.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium striatum ATCC 6940] Length = 289 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 30/141 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ +F SGC L +C++C DT ++ G ++ + I+ Sbjct: 67 RMTMFM--SGCPL-----------RCQYCHNPDT----MEMKVGTLERIEDVVKRIKRYK 109 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTI------EPPQGIDW 130 + G ++GGEPL Q+ +++ ++ G ++T+G + E + ID Sbjct: 110 PIFKASGGGLTISGGEPLFQIAFTRRVLKEVHDAGIHTTIDTSGFLGSRLRDEDLENIDL 169 Query: 131 ICVSPKAGCD--LKIKGGQEL 149 + + K+G + K+ +EL Sbjct: 170 VLLDVKSGDEETYKLVTRREL 190 >gi|227503005|ref|ZP_03933054.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium accolens ATCC 49725] gi|306836762|ref|ZP_07469723.1| pyruvate formate-lyase activating enzyme [Corynebacterium accolens ATCC 49726] gi|227076066|gb|EEI14029.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium accolens ATCC 49725] gi|304567349|gb|EFM42953.1| pyruvate formate-lyase activating enzyme [Corynebacterium accolens ATCC 49726] Length = 289 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 28/128 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ +F SGC L +C++C DT ++ G VD + I+ Sbjct: 67 RMTMFM--SGCPL-----------RCQYCHNPDT----MEMKTGTLERVDDVVKRIKRYK 109 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTI------EPPQGIDW 130 + G ++GGEPL Q+ +++ ++ G ++T+G + E ID Sbjct: 110 PIFQASGGGLTISGGEPLFQIAFTRRVLKEVHDAGIHTTIDTSGFLGSRLRDEDLDNIDL 169 Query: 131 ICVSPKAG 138 + + K+G Sbjct: 170 VLLDVKSG 177 >gi|167462221|ref|ZP_02327310.1| hypothetical protein Plarl_06640 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 247 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 58/173 (33%), Gaps = 34/173 (19%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F T+ G G RF GC + QC+FC DT Sbjct: 9 ETFGTVDGPG---------IRFVLFLQGC-----------ALQCQFCHNADT----WDTG 44 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKR-GFEIAVE 117 G V+++ IE +TGGEP LQ L +A R ++ Sbjct: 45 GGKVMEVEEILAEIESYLPYYRSSNGGITVTGGEPTLQAHFVAELFKACKSRFQLHTTLD 104 Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 ++G E D + V+ DLKI ++ + Q N + + Sbjct: 105 SSGFCEIDNVQDLMDVTDLVLLDLKIIDREKHIRLTSQPNDRILKTAKWLSDH 157 >gi|294102548|ref|YP_003554406.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Aminobacterium colombiense DSM 12261] gi|293617528|gb|ADE57682.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Aminobacterium colombiense DSM 12261] Length = 229 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 34/123 (27%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY--- 87 GCN +C +C + +GG N + E+ E R Sbjct: 26 GCNF-----------RCPYC----QNPELVEGGEIN------FLSEEGFFNFLERRIGLL 64 Query: 88 --CVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVSPKA 137 V+TGGEP LQ D +P I+ + GF + ++TNG+ +D++ + KA Sbjct: 65 DGVVITGGEPTLQPDLLPFIEKVKNMGFLVKLDTNGSDPKGLQSFIGKDLVDYVAMDVKA 124 Query: 138 GCD 140 + Sbjct: 125 SPE 127 >gi|148825204|ref|YP_001289957.1| hypothetical protein CGSHiEE_00400 [Haemophilus influenzae PittEE] gi|229846603|ref|ZP_04466711.1| hypothetical protein CGSHi7P49H1_08020 [Haemophilus influenzae 7P49H1] gi|148715364|gb|ABQ97574.1| hypothetical protein CGSHiEE_00400 [Haemophilus influenzae PittEE] gi|229810696|gb|EEP46414.1| hypothetical protein CGSHi7P49H1_08020 [Haemophilus influenzae 7P49H1] Length = 262 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 43/194 (22%) Query: 3 LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51 + ++ EIF+ L QG R ++F GC L C +C Sbjct: 1 MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42 Query: 52 TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109 + T+ + + EQ + R ++GGEP + VPL +AL Sbjct: 43 NPETIPRYTENAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99 Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ------ELKL---VFPQVNVSP 160 +G ++++G E + I V+ K DLK +G + K + PQ + Sbjct: 100 QGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLKGEGIGLQTLCFDRKNQAGIVPQQVILE 159 Query: 161 ENYIGFDFERFSLQ 174 +I D +LQ Sbjct: 160 RLHIKNDKLERNLQ 173 >gi|332179017|gb|AEE14706.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermodesulfobium narugense DSM 14796] Length = 229 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 8/99 (8%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L + +R + +C +C +F + N+D++ +E+ K+ V++GG Sbjct: 17 LSTVLFTERCNFRCPYC-HNFDLVLPNNLETINIDEILSFLEK----RRKKLDAVVISGG 71 Query: 94 EPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDW 130 EPLL I+ + + GF I ++TNG+ P + DW Sbjct: 72 EPLLHGKELEDFIKKVREMGFLIKIDTNGSF-PEKVFDW 109 >gi|323694204|ref|ZP_08108380.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium symbiosum WAL-14673] gi|323501677|gb|EGB17563.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium symbiosum WAL-14673] Length = 236 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 26/102 (25%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 +F GCN +C FC D ++GT G ++ +++ ++++ Sbjct: 26 ATIF--LGGCNF-----------RCPFCHNSD----LLEGTDG-LFSKEEVLTFLKKRAG 67 Query: 80 TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 E +TGGEP L D+ P I+ + G + ++TNG Sbjct: 68 ILEG----VCITGGEPTLHRDLEPFIREIRSLGLLVKLDTNG 105 >gi|322807903|emb|CBZ05478.1| radical activating enzyme [Clostridium botulinum H04402 065] Length = 278 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 63/175 (36%), Gaps = 38/175 (21%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDT--------------DF 54 F ++ G G A+F F GCN + + C+ C T D Sbjct: 12 FSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDS 66 Query: 55 VGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 V K G R + ++I+E T ++GGE LQ Sbjct: 67 VKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKEILKTKPFISG-ITVSGGECTLQR 125 Query: 100 D--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152 D + L + + G I V+TNG+++ + I + A D+K E K++ Sbjct: 126 DFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLIELMDMAMLDVKSFDSDEHKML 180 >gi|300935958|ref|ZP_07150911.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 21-1] gi|300949389|ref|ZP_07163398.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 116-1] gi|300451204|gb|EFK14824.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 116-1] gi|300458894|gb|EFK22387.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 21-1] gi|315286769|gb|EFU46188.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 110-3] Length = 200 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 KG R +V + +E++ + G L+GGEPL Q + L++A +G+ A+ET Sbjct: 2 KGKRMSVTAVMRELEKEENLYRRSGGGITLSGGEPLAQPEFARELLKACKAKGWHTAIET 61 Query: 119 NG 120 +G Sbjct: 62 SG 63 >gi|309972329|gb|ADO95530.1| Conserved hypothetical protein [Haemophilus influenzae R2846] Length = 262 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 43/194 (22%) Query: 3 LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51 + ++ EIF+ L QG R ++F GC L C +C Sbjct: 1 MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42 Query: 52 TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109 + T+ + + EQ + R ++GGEP + VPL +AL Sbjct: 43 NPETIPRYTENAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99 Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ------ELKL---VFPQVNVSP 160 +G ++++G E + I V+ K DLK +G + K + PQ + Sbjct: 100 QGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLKGEGIGLQTLCFDRKNQAGIVPQQVILE 159 Query: 161 ENYIGFDFERFSLQ 174 +I D +LQ Sbjct: 160 RLHIKNDKLERNLQ 173 >gi|145628901|ref|ZP_01784701.1| purine nucleoside phosphorylase [Haemophilus influenzae 22.1-21] gi|145638565|ref|ZP_01794174.1| predicted pyruvate-formate lyase-activating enzyme [Haemophilus influenzae PittII] gi|144979371|gb|EDJ89057.1| purine nucleoside phosphorylase [Haemophilus influenzae 22.1-21] gi|145272160|gb|EDK12068.1| predicted pyruvate-formate lyase-activating enzyme [Haemophilus influenzae PittII] gi|309750069|gb|ADO80053.1| Conserved hypothetical protein [Haemophilus influenzae R2866] Length = 262 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 34/153 (22%) Query: 3 LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51 + ++ EIF+ L QG R ++F GC L C +C Sbjct: 1 MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42 Query: 52 TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109 + T+ + + EQ + R ++GGEP + VPL +AL Sbjct: 43 NPETIPRYTESAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99 Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 +G ++++G E + I V+ K DLK Sbjct: 100 QGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLK 132 >gi|119946914|ref|YP_944594.1| pyruvate formate lyase-activating enzyme 1 [Psychromonas ingrahamii 37] gi|119865518|gb|ABM04995.1| pyruvate formate-lyase activating enzyme [Psychromonas ingrahamii 37] Length = 246 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT G +V++L + + Sbjct: 25 IF--LQGC-----------LMRCQYCHNRDT----WDTEAGKEMSVEELMAELLQYRHYM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 E G ++GGE +LQ + + +A + G ++TNG Sbjct: 68 EASGGGITVSGGEAMLQPEFIKAIFEACHLEGIHTCLDTNG 108 >gi|319897966|ref|YP_004136163.1| pyruvate-formate lyase-activating enzyme [Haemophilus influenzae F3031] gi|317433472|emb|CBY81855.1| Predicted pyruvate-formate lyase-activating enzyme [Haemophilus influenzae F3031] Length = 262 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 43/194 (22%) Query: 3 LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51 + ++ EIF+ L QG R ++F GC L C +C Sbjct: 1 MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42 Query: 52 TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109 + T+ + + EQ + R ++GGEP + VPL +AL Sbjct: 43 NPETIPRYTENAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99 Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ------ELKL---VFPQVNVSP 160 +G ++++G E + I V+ K DLK +G + K + PQ + Sbjct: 100 QGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLKGEGIGLQTLCFDRKNQAGIVPQQVILE 159 Query: 161 ENYIGFDFERFSLQ 174 +I D +LQ Sbjct: 160 RLHIKNDKLERNLQ 173 >gi|257125870|ref|YP_003163984.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Leptotrichia buccalis C-1013-b] gi|257049809|gb|ACV38993.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Leptotrichia buccalis C-1013-b] Length = 153 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 32/136 (23%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 R+ VF F GCN+ + G Y V +L D I + Sbjct: 20 RLTVF--FQGCNVKCKGCHNSEIQ------------DIRTGREYEVKKLCDEIMSYNL-- 63 Query: 82 EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139 + ++GGEPL+Q I ++++ FEIA+ T+ D+ VS Sbjct: 64 --PVKKITISGGEPLMQKEALEEFINEMHEKDFEIALYTS--------YDFKDVSRNILK 113 Query: 140 DLKI----KGGQELKL 151 LK K EL++ Sbjct: 114 KLKYLKVGKYMHELRI 129 >gi|148827711|ref|YP_001292464.1| purine nucleoside phosphorylase [Haemophilus influenzae PittGG] gi|148718953|gb|ABR00081.1| purine nucleoside phosphorylase [Haemophilus influenzae PittGG] Length = 262 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 43/194 (22%) Query: 3 LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51 + ++ EIF+ L QG R ++F GC L C +C Sbjct: 1 MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42 Query: 52 TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109 + T+ + + EQ + R ++GGEP + VPL +AL Sbjct: 43 NPETIPRYTENAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99 Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ------ELKL---VFPQVNVSP 160 +G ++++G E + I V+ K DLK +G + K + PQ + Sbjct: 100 QGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLKGEGIGLQTLCFDRKNQAGIVPQQVILE 159 Query: 161 ENYIGFDFERFSLQ 174 +I D +LQ Sbjct: 160 RLHIKNDKLERNLQ 173 >gi|284048152|ref|YP_003398491.1| pyruvate formate-lyase activating enzyme [Acidaminococcus fermentans DSM 20731] gi|283952373|gb|ADB47176.1| pyruvate formate-lyase activating enzyme [Acidaminococcus fermentans DSM 20731] Length = 243 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 27/119 (22%) Query: 8 EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F ++ G G +F GC++ +C +C DT G G Sbjct: 10 ETFGSVDGPGTRFI----IFV--QGCHM-----------RCLYCHNVDT---WKCGQGGQ 49 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 D+L D E EG ++GGEPLLQ+ + L + RG ++T G Sbjct: 50 LKTADELLDQAERYRPYWGPEGG-ITVSGGEPLLQMEFLLDLFRKAKARGIGTCIDTAG 107 >gi|206895496|ref|YP_002246380.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Coprothermobacter proteolyticus DSM 5265] gi|206738113|gb|ACI17191.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Coprothermobacter proteolyticus DSM 5265] Length = 230 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 36/142 (25%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY--- 87 GCN +C +C + Q A+ +E+ + R Sbjct: 26 GCNF-----------RCPYC---------HNPELVDPQQYAEPWQEEEFWAFLQSRTQKL 65 Query: 88 --CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKA 137 V+TGGEP LQ D+ P ++ + K GF I ++TNG+ +D+I + KA Sbjct: 66 DAVVVTGGEPTLQEDLQPFLEKIRKMGFLIKLDTNGSNPDVLKDLLSANLVDYIAMDIKA 125 Query: 138 GCDLKIKGGQELKLVFPQVNVS 159 + K + K+ + ++ Sbjct: 126 PLE---KYSEVTKVPVDKPDIE 144 >gi|210615494|ref|ZP_03290621.1| hypothetical protein CLONEX_02837 [Clostridium nexile DSM 1787] gi|210150343|gb|EEA81352.1| hypothetical protein CLONEX_02837 [Clostridium nexile DSM 1787] Length = 232 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 18/101 (17%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F SGCN +C FC + + + +Y +++ ++++ + Sbjct: 21 TIF--TSGCNF-----------RCPFCHNAPLVLGTGQTEKYPEEEIFTFLKKRQGILDG 67 Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 ++GGEPLLQ D+ ++ + + GF + ++TNG+ Sbjct: 68 ----VCVSGGEPLLQNDIERFLEQVKELGFLVKLDTNGSFP 104 >gi|54024605|ref|YP_118847.1| hypothetical protein nfa26360 [Nocardia farcinica IFM 10152] gi|54016113|dbj|BAD57483.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 526 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 16/94 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 +GCNL +C C F G V + ++++ Sbjct: 126 LAGCNL-----------RCPTC---FADSTPELAGVVAVADVLANVDQRLAREHGRLDVL 171 Query: 89 VLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120 +L+GGEP L D+P L+ L R I + TNG Sbjct: 172 MLSGGEPTLHPDLPTLLAELTARPITRILINTNG 205 >gi|20094522|ref|NP_614369.1| fused ferredoxin domain/pyruvate-formate lyase-activating protein [Methanopyrus kandleri AV19] gi|19887637|gb|AAM02299.1| Ferredoxin domain fused to pyruvate-formate lyase-activating enzyme [Methanopyrus kandleri AV19] Length = 390 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 18/104 (17%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL +C C + G R ++ A L+ E + Sbjct: 164 GCNL-----------RCPQCQNHSIAFGAAMGARMRPEEAARLL--VGTAREYGVNRVAI 210 Query: 91 TGGEPLLQV--DVPLIQALNKRG---FEIAVETNGTIEPPQGID 129 +GGEP L V ++ + G + V+TNGT+ P +D Sbjct: 211 SGGEPTLNREFLVEFVRKCREYGGPDLRVHVDTNGTVLSPDYVD 254 >gi|145635399|ref|ZP_01791101.1| predicted pyruvate-formate lyase-activating enzyme [Haemophilus influenzae PittAA] gi|229844321|ref|ZP_04464461.1| purine nucleoside phosphorylase [Haemophilus influenzae 6P18H1] gi|145267405|gb|EDK07407.1| predicted pyruvate-formate lyase-activating enzyme [Haemophilus influenzae PittAA] gi|229812570|gb|EEP48259.1| purine nucleoside phosphorylase [Haemophilus influenzae 6P18H1] Length = 262 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 34/153 (22%) Query: 3 LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51 + ++ EIF+ L QG R ++F GC L C +C Sbjct: 1 MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42 Query: 52 TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109 + T+ + + EQ + R ++GGEP + VPL +AL Sbjct: 43 NPETIPRYTENAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFEALRS 99 Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 +G ++++G E + I V+ K DLK Sbjct: 100 QGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLK 132 >gi|68249117|ref|YP_248229.1| pyruvate-formate lyase-activating enzyme [Haemophilus influenzae 86-028NP] gi|68057316|gb|AAX87569.1| predicted pyruvate-formate lyase-activating enzyme [Haemophilus influenzae 86-028NP] Length = 262 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 34/153 (22%) Query: 3 LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51 + ++ EIF+ L QG R ++F GC L C +C Sbjct: 1 MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42 Query: 52 TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109 + T+ + + EQ + R ++GGEP + VPL +AL Sbjct: 43 NPETIPRYTESAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99 Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 +G ++++G E + I V+ K DLK Sbjct: 100 QGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLK 132 >gi|13542157|ref|NP_111845.1| Fe-S oxidoreductase [Thermoplasma volcanium GSS1] gi|14325589|dbj|BAB60492.1| hypothetical protein [Thermoplasma volcanium GSS1] Length = 313 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 28/110 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD-LIEEQWITGEKEGRYCVL 90 CNL +C+ C +G + + L D IEE G + + Sbjct: 12 CNL-----------RCKSC-------NAWQGKIFFPEDLIDKHIEEMKKNG---IKIVSV 50 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134 TGGEP L V +++ L + F + TNGT +D + +S Sbjct: 51 TGGEPTLNKSVVEIVKKLKEHHFFTHIATNGTNPYVMRKLYPYLDAVTIS 100 >gi|224540942|ref|ZP_03681481.1| hypothetical protein CATMIT_00093 [Catenibacterium mitsuokai DSM 15897] gi|224526175|gb|EEF95280.1| hypothetical protein CATMIT_00093 [Catenibacterium mitsuokai DSM 15897] Length = 306 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 11/143 (7%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 +G V+++ D+ + E+ L+GGE ++Q D + L+ AL ++G +A+ET Sbjct: 110 EGEIKTVEEVVDICMQDIDFYEESNGGVTLSGGEAMVQYDFMMALVHALKEKGLHLAIET 169 Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD-FERF 171 G ++ D + K +K K G + Q N G + R Sbjct: 170 TGIVDHEKFKKAAPLFDLLLFDVKQADPMKHKKGTHVTNEVIQKNFKWAIEQGLNVLPRI 229 Query: 172 SLQPMDGPFLEENTNLAISYCFQ 194 + P LE+ LA C + Sbjct: 230 PVIPGFNETLEDAKELA--TCIK 250 >gi|94314056|ref|YP_587265.1| ribonucleoside triphosphate reductase-activating protein (NrdG-D activase) [Cupriavidus metallidurans CH34] gi|93357908|gb|ABF11996.1| ribonucleoside triphosphate reductase-activating protein (NrdG-D activase) [Cupriavidus metallidurans CH34] Length = 223 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 26/127 (20%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 GR+A VFC GC +C +C + + R D LA L + Sbjct: 19 GRLAAVVFC--QGCP-----------WRCDYCHNPHLIPVASPSARVWEDVLAFLARRRG 65 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 + V +GGEP LQ +P ++ + + GFE+A+ T G +DW+ Sbjct: 66 LLDG-----VVFSGGEPTLQAALPAAMRDVRQLGFEVALHTAGMYPDRLEAALPWVDWVG 120 Query: 133 VSPKAGC 139 KA Sbjct: 121 FDIKAPA 127 >gi|193214403|ref|YP_001995602.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Chloroherpeton thalassium ATCC 35110] gi|193087880|gb|ACF13155.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Chloroherpeton thalassium ATCC 35110] Length = 204 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 18/100 (18%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF GCN +C +C + + G + + D ++ T + Sbjct: 22 VF--TQGCNF-----------RCPYCHNPELVLPEQFGKTLSPALVLDFLK----TRKGR 64 Query: 85 GRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123 +TGGEP LQ + +QA+ +I ++TNG Sbjct: 65 LSSVTITGGEPALQPALLDFLQAIKSIPLKIKLDTNGAFP 104 >gi|256810531|ref|YP_003127900.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanocaldococcus fervens AG86] gi|256793731|gb|ACV24400.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanocaldococcus fervens AG86] Length = 240 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 30/125 (24%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +F GCN+ +C +C + V++L + I+ Sbjct: 24 IF--LHGCNM-----------RCPYC--HNLNHILGHKKEMTVEELFNNID------FFF 62 Query: 85 GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSP 135 V++GGEP LQ D + + + ++GF + ++TNGT ID++ + Sbjct: 63 ADAIVISGGEPTLQKDAVIEIAKYAKEKGFPVKIDTNGTRPEVIEELVKNNLIDYVAIDV 122 Query: 136 KAGCD 140 K D Sbjct: 123 KCKFD 127 >gi|167754788|ref|ZP_02426915.1| hypothetical protein CLORAM_00292 [Clostridium ramosum DSM 1402] gi|237735925|ref|ZP_04566406.1| pyruvate formate-lyase activating enzyme [Mollicutes bacterium D7] gi|167705620|gb|EDS20199.1| hypothetical protein CLORAM_00292 [Clostridium ramosum DSM 1402] gi|229381670|gb|EEO31761.1| pyruvate formate-lyase activating enzyme [Coprobacillus sp. D7] Length = 255 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 27/119 (22%) Query: 8 EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F ++ G G + +F GC L +C+FC DT + + T Sbjct: 19 ESFGSVDGPGIRYI----IF--LHGCPL-----------RCKFCHNPDT-WANAKST-ME 59 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 + +A ++ + G G ++GGEPLLQ+D + L + K G ++T+G Sbjct: 60 MTPQEAIAKALKYKSYWGNDGG--ITVSGGEPLLQIDFLIELFKLAKKEGINTCIDTSG 116 >gi|170735545|ref|YP_001774659.1| molybdenum cofactor biosynthesis protein A [Burkholderia cenocepacia MC0-3] gi|169821583|gb|ACA96164.1| molybdenum cofactor biosynthesis protein A [Burkholderia cenocepacia MC0-3] Length = 374 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 24/145 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN G R S TD+ + + R + QL + G ++ R +T Sbjct: 52 CNFRCGYCMPRESFG-----TDYAFMPSS--ERLSFAQLEKIARAFTSLGVEKIR---IT 101 Query: 92 GGEPLLQVDVP-LIQALN------KRGFEIAVETNGTIEP-------PQGIDWICVSPKA 137 GGEPLL+ ++ LI+ L + EIA+ TNG++ G+ + VS A Sbjct: 102 GGEPLLRRNLEALIERLATLTTVDGKPVEIALTTNGSLLAAKARALRDAGLSRVTVSLDA 161 Query: 138 GCDLKIKGGQELKLVFPQVNVSPEN 162 D + + + +V E Sbjct: 162 LDDAVFRRMNDADVPVARVLAGIEA 186 >gi|160936896|ref|ZP_02084260.1| hypothetical protein CLOBOL_01785 [Clostridium bolteae ATCC BAA-613] gi|158440086|gb|EDP17833.1| hypothetical protein CLOBOL_01785 [Clostridium bolteae ATCC BAA-613] Length = 232 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 21/100 (21%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITG 81 +F GCN +C FC G+ G+ Y + + +E++ Sbjct: 20 ATIF--TGGCNF-----------RCPFC--HNSGLLGSDAEEYECQEDILAFLEKRKRVL 64 Query: 82 EKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 E +TGGEP LQ D+ I+ + G + ++TNG Sbjct: 65 EG----VCITGGEPTLQPDLEEFIRKVRSLGLAVKLDTNG 100 >gi|218780153|ref|YP_002431471.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfatibacillum alkenivorans AK-01] gi|218761537|gb|ACL04003.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfatibacillum alkenivorans AK-01] Length = 230 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 27/101 (26%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY- 87 +GCN +C +C A +I+ W+ + R Sbjct: 24 TAGCNF-----------KCPYC----------HNPELLSFSTAQVIKNNWVMSFLKERKG 62 Query: 88 ----CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 V+TGGEP L D+ + A+ GFE+ ++TNG+ Sbjct: 63 FLDGVVITGGEPTLHKDLMDFMAAIKDMGFELKLDTNGSRP 103 >gi|125974087|ref|YP_001037997.1| radical SAM family protein [Clostridium thermocellum ATCC 27405] gi|281418232|ref|ZP_06249252.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium thermocellum JW20] gi|125714312|gb|ABN52804.1| Radical SAM [Clostridium thermocellum ATCC 27405] gi|281409634|gb|EFB39892.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium thermocellum JW20] Length = 280 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 56/178 (31%), Gaps = 44/178 (24%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLS------------------------- 44 F T+ G G A+F GCN+ + + Sbjct: 11 FSTVDGPGNRT---AIF--LQGCNMNCLYCHNPETRCKCMHCGACVNSCPTGALSFEDEK 65 Query: 45 -----AQCRFCDTDFVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 A+C CD+ + +Q+ +E+Q R ++GGE Sbjct: 66 VRYNCAKCVHCDSCIKACPHDSSPKTVDMTPEQVWRKVEKQIPF----IRGITVSGGECT 121 Query: 97 LQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152 L L G +++NGT++ D + V+ D+K +E K V Sbjct: 122 LYPEFLTELFILAQAHGLSTLIDSNGTLDFEHYPDLLAVTDGVMLDIKAFDCEEHKRV 179 >gi|145633528|ref|ZP_01789257.1| hypothetical protein CGSHi3655_05394 [Haemophilus influenzae 3655] gi|144985897|gb|EDJ92505.1| hypothetical protein CGSHi3655_05394 [Haemophilus influenzae 3655] Length = 262 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 30/151 (19%) Query: 3 LYSIKEIFLTL---------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD 53 + ++ EIF+ L +G+G ++F GC L C +C Sbjct: 1 MTALSEIFVPLHRIIPFSNVEGQGNRT---SIF--LQGCKL-----------NCLYCHNP 44 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRG 111 + T+ + + EQ + R ++GGEP + VPL +AL +G Sbjct: 45 ETIPRYTENAKLVS---LQYLYEQVMEATPFIRGVTVSGGEPTIHHKKLVPLFEALRSQG 101 Query: 112 FEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 ++++G E + I V+ K DLK Sbjct: 102 LTCYLDSSGFFEFDRIRSLIDVTDKFLFDLK 132 >gi|145219616|ref|YP_001130325.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Prosthecochloris vibrioformis DSM 265] gi|145205780|gb|ABP36823.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Chlorobium phaeovibrioides DSM 265] Length = 232 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 18/98 (18%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGR 86 SGCN +C +C + + G + D++ I Sbjct: 30 TSGCNF-----------RCPYCHNPELVLPDEFGSTPLLSFDEVLARITRNRNLLGG--- 75 Query: 87 YCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 V+TGGEP + +P ++ L G ++ ++TNG+ Sbjct: 76 -VVVTGGEPTIHQSLPEALRTLKGLGLKVKLDTNGSRP 112 >gi|316934450|ref|YP_004109432.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Rhodopseudomonas palustris DX-1] gi|315602164|gb|ADU44699.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Rhodopseudomonas palustris DX-1] Length = 210 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 38/119 (31%), Gaps = 9/119 (7%) Query: 27 CRFSGCNLWSGREQDRLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 R S C+ C + C + R + T Sbjct: 22 VRLSTCDWPGELVATVFCQGCPWQC--GYCHNPHLLPARGPDQLAWQDVFAFLETRRGLL 79 Query: 86 RYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAG 138 V +GGEP LQ D+PL I A+ GF I + T G +DWI KA Sbjct: 80 DGVVFSGGEPTLQSDLPLAIAAVRSLGFRIGLHTAGPYPERLARVLPLLDWIGFDVKAP 138 >gi|153815319|ref|ZP_01967987.1| hypothetical protein RUMTOR_01553 [Ruminococcus torques ATCC 27756] gi|317501676|ref|ZP_07959867.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae bacterium 8_1_57FAA] gi|331088441|ref|ZP_08337356.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae bacterium 3_1_46FAA] gi|145847381|gb|EDK24299.1| hypothetical protein RUMTOR_01553 [Ruminococcus torques ATCC 27756] gi|316896927|gb|EFV19007.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae bacterium 8_1_57FAA] gi|330408208|gb|EGG87696.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae bacterium 3_1_46FAA] Length = 250 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 26/118 (22%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64 E F ++ G G R +F +GC + +C+FC DT KG Sbjct: 15 ESFGSVDGPGV---RYVIF--LTGC-----------AMRCQFCHNPDT----WNLKKGTL 54 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 Y D+L + T + ++GGEPLLQ+D + L + + G ++T+G Sbjct: 55 YTADELLKTALR-YRTYWGDKGGITVSGGEPLLQIDFLIELFRKAKEAGVHTTLDTSG 111 >gi|313898310|ref|ZP_07831847.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium sp. HGF2] gi|312956692|gb|EFR38323.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium sp. HGF2] Length = 378 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 18/101 (17%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F GCN +C FC + + + +E++ + Sbjct: 169 TIF--TGGCNF-----------RCPFCQNSDLVFLPENMPELQEEDVLSFLEKRKGILDG 215 Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 ++GGEPLL ++ ++ + G+ + ++TNG+ Sbjct: 216 ----VCISGGEPLLNPELAGFLKKIKDMGYAVKLDTNGSSP 252 >gi|192291021|ref|YP_001991626.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Rhodopseudomonas palustris TIE-1] gi|192284770|gb|ACF01151.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Rhodopseudomonas palustris TIE-1] Length = 233 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 38/119 (31%), Gaps = 9/119 (7%) Query: 27 CRFSGCNLWSGREQDRLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 R S C+ C + C + R + T Sbjct: 22 VRLSTCDWPGELVATVFCQGCPWQC--GYCHNPHLLPARGPDQLAWQDVFAFLETRRGLL 79 Query: 86 RYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAG 138 V +GGEP LQ D+PL I A+ GF I + T G +DWI KA Sbjct: 80 DGVVFSGGEPTLQSDLPLAIAAVRSLGFRIGLHTAGPYPERLARVLPLLDWIGFDVKAP 138 >gi|309778332|ref|ZP_07673258.1| putative pyruvate formate-lyase 1 activating enzyme [Erysipelotrichaceae bacterium 3_1_53] gi|308913898|gb|EFP59712.1| putative pyruvate formate-lyase 1 activating enzyme [Erysipelotrichaceae bacterium 3_1_53] Length = 306 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 49/156 (31%), Gaps = 52/156 (33%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA--------------QCRFC----- 50 F T GEG +F GC L Q+ +C C Sbjct: 14 FATHDGEGIRT---TIF--LKGCPLRCAWCQNPEGLSPKPQLLYMKSKCMRCGSCVIAAK 68 Query: 51 --------DTDFVGIQGTKGG-----------------RYNVDQLADLIEEQWITGEKEG 85 D+ ++ ++ Y V++L I++ G Sbjct: 69 HGGVSMKHDSIWLQRSASEDWQHILELCPTGALRYDAKEYTVEELFKEIQKDAPFFRYGG 128 Query: 86 RYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119 L+GGEPLLQ D L+QA G +ET+ Sbjct: 129 G-VTLSGGEPLLQDDFACRLLQACKTEGIHTTMETS 163 >gi|256004437|ref|ZP_05429417.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium thermocellum DSM 2360] gi|255991578|gb|EEU01680.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium thermocellum DSM 2360] gi|316941332|gb|ADU75366.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium thermocellum DSM 1313] Length = 280 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 56/178 (31%), Gaps = 44/178 (24%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLS------------------------- 44 F T+ G G A+F GCN+ + + Sbjct: 11 FSTVDGPGNRT---AIF--LQGCNMNCLYCHNPETRCKCMHCGACVNSCPTGALSFEDEK 65 Query: 45 -----AQCRFCDTDFVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 A+C CD+ + +Q+ +E+Q R ++GGE Sbjct: 66 VRYNCAKCVHCDSCIKACPHDSSPKTVDMTPEQVWRKVEKQIPF----IRGITVSGGECT 121 Query: 97 LQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152 L L G +++NGT++ D + V+ D+K +E K V Sbjct: 122 LYPEFLTELFILAQAHGLSTLIDSNGTLDFEHYPDLLAVTDGVMLDIKAFDCEEHKRV 179 >gi|291546361|emb|CBL19469.1| pyruvate formate-lyase 1-activating enzyme [Ruminococcus sp. SR1/5] Length = 249 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 26/118 (22%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64 E F ++ G G R +F SGC + +C+FC DT Q G Sbjct: 15 ESFGSVDGPGV---RYVIF--LSGC-----------AMRCQFCHNPDT----WQMKTGTE 54 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 Y D+L + +G ++GGEPLLQ+D L + K G ++T+G Sbjct: 55 YTADELLEKACRYRSYWGSKGG-ITVSGGEPLLQIDFLTELFRKAKKLGIHTTLDTSG 111 >gi|168179136|ref|ZP_02613800.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum NCTC 2916] gi|182670033|gb|EDT82009.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum NCTC 2916] Length = 232 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 57/151 (37%), Gaps = 36/151 (23%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G + D++ + Sbjct: 22 VF--FQGC-----------QLRCVYCHNPDT----WDFNAGIEISSDEVLKKVLRYKPY- 63 Query: 82 EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT-----IEPPQGIDWICVS 134 K+ +GGEPL+Q + +++ +G A++T+G E Q +D + + Sbjct: 64 FKQVGGITCSGGEPLMQPEFLLEILKKCKNQGIHTALDTSGVGIGNYEEILQYVDLVILD 123 Query: 135 PKAGCDLK--------IKGGQELKLVFPQVN 157 K + K ++G + K V ++N Sbjct: 124 IKHIQEEKYISICGKNMEGFNKFKRVVNKLN 154 >gi|301169235|emb|CBW28832.1| predicted pyruvate-formate lyase-activating enzyme [Haemophilus influenzae 10810] Length = 262 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 43/194 (22%) Query: 3 LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51 + ++ EIF+ L QG R ++F GC L C +C Sbjct: 1 MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42 Query: 52 TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109 + T+ + + EQ + R ++GGEP + VPL +AL Sbjct: 43 NPETIPRYTENAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99 Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ------ELKL---VFPQVNVSP 160 +G ++++G E + I V+ K DLK +G + K + PQ + Sbjct: 100 QGLTCYLDSSGFFEFDRIRSLIDVTDKFLFDLKGEGIGLQTLCFDRKNQAGIVPQQVIPK 159 Query: 161 ENYIGFDFERFSLQ 174 +I D +LQ Sbjct: 160 RLHIKNDKLERNLQ 173 >gi|256841526|ref|ZP_05547033.1| glycyl-radical enzyme activating protein [Parabacteroides sp. D13] gi|256737369|gb|EEU50696.1| glycyl-radical enzyme activating protein [Parabacteroides sp. D13] Length = 276 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 8/79 (10%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--V 99 R +C F + RY+ + L + + E+ G L+GGEPLLQ Sbjct: 75 RSIIECPF------SVCAPIAKRYDSEDLLKELLKDSSLFEQSGGGVTLSGGEPLLQWKP 128 Query: 100 DVPLIQALNKRGFEIAVET 118 VPL+ L +++ET Sbjct: 129 LVPLLSELKAANIHVSIET 147 >gi|256822441|ref|YP_003146404.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Kangiella koreensis DSM 16069] gi|256795980|gb|ACV26636.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Kangiella koreensis DSM 16069] Length = 249 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 11/110 (10%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 +L + +CR+C I Y+ +L + + ++ E V +G Sbjct: 33 HLSCVVYCQGCAWRCRYCHNP-ELIPTKADQSYDWQELVNFLTKRQGLLEA----VVFSG 87 Query: 93 GEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPK 136 GEPLLQ VP I+ + GF++ + T G+ +DW+ K Sbjct: 88 GEPLLQSALVPAIETVKAMGFKVGLHTGGSAPKRFKALLSNVDWVGFDVK 137 >gi|163857402|ref|YP_001631700.1| hypothetical protein Bpet3090 [Bordetella petrii DSM 12804] gi|163261130|emb|CAP43432.1| pflA [Bordetella petrii] Length = 253 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 28/127 (22%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G +A VF +GC +C +C + + +GG Y+ + + + Sbjct: 51 GMLACVVFI--AGCP-----------WRCSYCHNPHLQV---RGGHYDWKAVLEFL--NG 92 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 G + V +GGEPL + +P +++A+ GF +A+ T G +DW+ Sbjct: 93 RQGLLDA--VVFSGGEPLSEPRLPQMVRAVRTLGFRVALHTAGIYPSRLQDLLPSLDWVG 150 Query: 133 VSPKAGC 139 KA Sbjct: 151 FDVKADA 157 >gi|158321088|ref|YP_001513595.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Alkaliphilus oremlandii OhILAs] gi|158141287|gb|ABW19599.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Alkaliphilus oremlandii OhILAs] Length = 227 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 29/157 (18%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 VF GCN +C +C + G R V+ D ++++ E Sbjct: 20 TVFF-TGGCNF-----------RCPYC--HNSPLVHNIGERIEVEDAIDFLKKRKRFVEA 65 Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVSP 135 ++GGEP LQ D+ I + K G + ++TNGT Q +D++ + Sbjct: 66 ----VCISGGEPTLQRDLYDFIYRIKKEGLLVKLDTNGTNPILLRKLIEDQLLDYVAMDI 121 Query: 136 KAG---CDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169 KA ++ + + + V++ EN + ++F Sbjct: 122 KAPLNQYEMVTQVNVNIHDIQESVHILLENKVDYEFR 158 >gi|269956682|ref|YP_003326471.1| pyruvate formate-lyase activating enzyme [Xylanimonas cellulosilytica DSM 15894] gi|269305363|gb|ACZ30913.1| pyruvate formate-lyase activating enzyme [Xylanimonas cellulosilytica DSM 15894] Length = 334 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 28/135 (20%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF +GC L +C +C DT ++ G DQL I+ Sbjct: 98 RMTVF--LNGCPL-----------RCLYCHNPDT----LEMKDGEPVTADQLLTRIKRYV 140 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130 ++GGE L Q L++ + G A++T+G T E D Sbjct: 141 PAFTATQGGLTISGGEVLQQPAFAARLLRGAKEMGVHTAIDTSGFLGAAMTDEMIADTDL 200 Query: 131 ICVSPKAGCDLKIKG 145 + + K+G + Sbjct: 201 VLLDIKSGDPDIYRR 215 >gi|225028851|ref|ZP_03718043.1| hypothetical protein EUBHAL_03138 [Eubacterium hallii DSM 3353] gi|224953825|gb|EEG35034.1| hypothetical protein EUBHAL_03138 [Eubacterium hallii DSM 3353] Length = 250 Score = 52.3 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 25/120 (20%) Query: 7 KEIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G VF GC L +C+FC DT + + Sbjct: 15 TESFGSVDGPGVRFI----VF--LQGCPL-----------RCQFCHNPDT-WKMTEENGA 56 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 N ++L + K G ++GGEPLLQ+D + + ++G ++T G Sbjct: 57 IWKNAEELLNQALRYRPY-WKNGGGITVSGGEPLLQIDFMLEFFKKAKEKGIHTVIDTAG 115 >gi|187926826|ref|YP_001893171.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Ralstonia pickettii 12J] gi|241665155|ref|YP_002983514.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Ralstonia pickettii 12D] gi|187728580|gb|ACD29744.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Ralstonia pickettii 12J] gi|240867182|gb|ACS64842.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Ralstonia pickettii 12D] Length = 237 Score = 52.3 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 34/133 (25%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G++A VF +GC +C +C + + +VD Q Sbjct: 35 GQLAAVVFI--AGCP-----------WRCHYCHNPHLQTRARSLDWNDVDAFL-----QK 76 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 G +G V +GGEPL + +P L++A+ GF+I + T G +DW+ Sbjct: 77 RAGLLDG--VVFSGGEPLSEPRLPELMRAVRALGFKIGLHTGGIYPARMAEALPLVDWV- 133 Query: 133 VSPKAGCDLKIKG 145 G D+K G Sbjct: 134 -----GLDIKTTG 141 >gi|332107698|gb|EGJ08922.1| radical SAM family protein [Rubrivivax benzoatilyticus JA2] Length = 203 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 19/96 (19%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY- 87 SGC L +C +C + +A+++ + + Sbjct: 57 LSGCPL-----------RCAYC----HNPDTWHRHDGTLTSVAEILTDIGRYRGFIQAHG 101 Query: 88 -CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 L+GGEPL Q L++ G A++T+G Sbjct: 102 GVTLSGGEPLTQPRFVKALLRGCKAMGLHTALDTSG 137 >gi|253580416|ref|ZP_04857681.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848146|gb|EES76111.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 231 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 19/121 (15%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F GCN +C FC + + + Y+ ++L ++++ + Sbjct: 21 TIF--LGGCNF-----------RCPFCQNGILVVAPGEQPDYSQEELLTFLKKRKGILDG 67 Query: 84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDL 141 ++GGEP L + + + G+ + ++TNG+ + + + K D+ Sbjct: 68 ----VCISGGEPTLSDGLEEFLGKIKELGYAVKLDTNGSRPKIVKHLAEAGLIDKVAMDI 123 Query: 142 K 142 K Sbjct: 124 K 124 >gi|91203064|emb|CAJ72703.1| similar to moaA/nirJ/pqqE cofactor biosynthesis protein [Candidatus Kuenenia stuttgartiensis] Length = 408 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 17/101 (16%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 CNL + D ++ TK + +D +A+ + Sbjct: 48 QRCNLKCVHCYSQSK------DIEYPNELSTKEAKAMLDDIAE----------YGAPVIL 91 Query: 90 LTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGID 129 +GGEPL++ D + LI+ +G + TNGT+ + D Sbjct: 92 FSGGEPLMRPDLLELIEYAKAQGLRAVISTNGTLITKEKAD 132 >gi|269215654|ref|ZP_06159508.1| nitrite reductase heme biosynthesis J protein [Slackia exigua ATCC 700122] gi|269131141|gb|EEZ62216.1| nitrite reductase heme biosynthesis J protein [Slackia exigua ATCC 700122] Length = 420 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 18/96 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C + + + + ++ +I++ + + + Sbjct: 50 CNLKC--------EHC------YALSDAKRYDQLSTEEAKAMIDDL---ADFGAPVLLFS 92 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 GGEP ++ D+ L+Q RG + + TNGT+ P+ Sbjct: 93 GGEPCVRPDLVELMQHAKDRGMRVVISTNGTLITPE 128 >gi|266619761|ref|ZP_06112696.1| putative radical SAM [Clostridium hathewayi DSM 13479] gi|288868665|gb|EFD00964.1| putative radical SAM [Clostridium hathewayi DSM 13479] Length = 328 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 17/110 (15%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R ++ G + ++ ++ E K+ +L Sbjct: 16 CNLNCWFCGQRKNS---------ALRDGKESMALKTEEWLGIVNELDAAAGKKPS-VMLW 65 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI------EPPQGIDWICVS 134 GGEPL+ + L++RG+ + + TNGT+ P +D I VS Sbjct: 66 GGEPLMSPCFDEIASTLHERGYRVGIVTNGTLLDRHAETVPYCLDKIYVS 115 >gi|225569558|ref|ZP_03778583.1| hypothetical protein CLOHYLEM_05652 [Clostridium hylemonae DSM 15053] gi|225161766|gb|EEG74385.1| hypothetical protein CLOHYLEM_05652 [Clostridium hylemonae DSM 15053] Length = 288 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 42/124 (33%), Gaps = 11/124 (8%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG---RYNVDQLADLIEEQ--WITGEKEGR 86 C + + CR C+ + G Y + ++ E +G Sbjct: 57 CPHGAVKGTQVDREVCRTCEKKECVTEHKTKGMYLSYEEETPEEVFREACAGELMFYDGG 116 Query: 87 YCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQG----IDWICVSPKAGCD 140 TGGE LQ ++ L + G AVETNGT G ID + + K D Sbjct: 117 GVTFTGGEATLQYDELEKALRMLKEYGINTAVETNGTHPALAGLFPYIDELIIDCKHCSD 176 Query: 141 LKIK 144 K Sbjct: 177 TKHT 180 >gi|297545065|ref|YP_003677367.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842840|gb|ADH61356.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 228 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 30/158 (18%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 VF SGCN +C +C ++ + + D ++++ E Sbjct: 19 ATVFV--SGCNF-----------KCPYCHNSYLIQIREGMR--SEKEFFDYLKKRANLIE 63 Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS 134 +TGGEP L + I+ + F + ++TNG+ +D+I + Sbjct: 64 G----VCITGGEPTLWKGLEDFIKDIKDLNFSVKLDTNGSRPQVLENLIDEGLLDYIAMD 119 Query: 135 PKAGCD---LKIKGGQELKLVFPQVNVSPENYIGFDFE 169 KA + + +K +++ V V + + I ++F Sbjct: 120 IKAPIEKYGIFLKNKKDIDNVQKSVEIIKNSDIDYEFR 157 >gi|218561250|ref|YP_002394163.1| pyruvate formate-lyase 3-activating enzyme [Escherichia coli S88] gi|218691120|ref|YP_002399332.1| putative pyruvate formate-lyase 3-activating enzyme [Escherichia coli ED1a] gi|237703757|ref|ZP_04534238.1| pyruvate-formate lyase-activating enzyme [Escherichia sp. 3_2_53FAA] gi|218368019|emb|CAR05821.1| putative pyruvate formate-lyase 3-activating enzyme [Escherichia coli S88] gi|218428684|emb|CAR09615.2| putative pyruvate formate-lyase 3-activating enzyme [Escherichia coli ED1a] gi|226901669|gb|EEH87928.1| pyruvate-formate lyase-activating enzyme [Escherichia sp. 3_2_53FAA] gi|323950274|gb|EGB46155.1| glycyl-radical enzyme activating protein family protein [Escherichia coli H252] gi|323955614|gb|EGB51374.1| glycyl-radical enzyme activating protein family protein [Escherichia coli H263] Length = 305 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 KG R +V + +E++ + G L+GGEPL Q + L++A +G+ A+ET Sbjct: 107 KGKRMSVTAVMRELEKEENLYRRSGGGITLSGGEPLAQPEFARELLKACKAKGWHTAIET 166 Query: 119 NG 120 +G Sbjct: 167 SG 168 >gi|26250358|ref|NP_756398.1| putative pyruvate formate-lyase 3 activating enzyme [Escherichia coli CFT073] gi|26110788|gb|AAN82972.1|AE016769_87 Putative pyruvate formate-lyase 3 activating enzyme [Escherichia coli CFT073] Length = 305 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 KG R +V + +E++ + G L+GGEPL Q + L++A +G+ A+ET Sbjct: 107 KGKRMSVTAVMRELEKEENLYRRSGGGITLSGGEPLAQPEFARELLKACKAKGWHTAIET 166 Query: 119 NG 120 +G Sbjct: 167 SG 168 >gi|150389198|ref|YP_001319247.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Alkaliphilus metalliredigens QYMF] gi|149949060|gb|ABR47588.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Alkaliphilus metalliredigens QYMF] Length = 227 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 66/195 (33%), Gaps = 56/195 (28%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCN G + +G N D++ +++ +K Sbjct: 24 TGGCNFRCGYCHNGEIVN-------------NQGRTINEDEILGFLKK----RKKFIDAV 66 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGCD 140 ++GGEP LQ D+ + + GF + ++TNGT ID+I + K + Sbjct: 67 CISGGEPTLQNDLYEFVLQIKDLGFYVKLDTNGTNPTLLEKLIGENLIDYIAMDVKGPLE 126 Query: 141 ------------LKIKGGQEL----------KLVFPQVNVSPENYIGF-----DFERFSL 173 IK EL + Q S E++I +++ L Sbjct: 127 KYEMIVRTKVNLEDIKRSIELIQQSQVSYEFRTTVCQELFSREDFINIGKLLQGSKKYYL 186 Query: 174 QPMDGPFLEENTNLA 188 Q F + +T LA Sbjct: 187 Q----NFRDGHTVLA 197 >gi|220929757|ref|YP_002506666.1| radical SAM protein [Clostridium cellulolyticum H10] gi|220000085|gb|ACL76686.1| Radical SAM domain protein [Clostridium cellulolyticum H10] Length = 565 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + + +Q+ LI+E + G E R LT Sbjct: 85 CNL-----------KCVYC---YNNSRKDFSKELEKEQIFRLIDELYEAGTFEIR---LT 127 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 GGEP L D +++ + + F I++ TNG Sbjct: 128 GGEPTLHPDFFEIVKYIKSKNFFISLGTNG 157 >gi|153940083|ref|YP_001392935.1| radical SAM domain-containing protein [Clostridium botulinum F str. Langeland] gi|152935979|gb|ABS41477.1| radical SAM domain protein [Clostridium botulinum F str. Langeland] gi|295320913|gb|ADG01291.1| radical SAM domain protein [Clostridium botulinum F str. 230613] Length = 278 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 64/175 (36%), Gaps = 38/175 (21%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDT--------------DF 54 F ++ G G A+F F GCN + + C+ C T D+ Sbjct: 12 FSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDY 66 Query: 55 VGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 V K G R + ++I++ T ++GGE LQ Sbjct: 67 VKWDENKCKNCGLCLKKCKNNCGPRNKYMSVGEIIKKILKTKPFISG-ITVSGGECTLQK 125 Query: 100 D--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152 D + L + + G I V+TNG+++ + + A D+K +E K++ Sbjct: 126 DFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMVDVKSFDNEEHKML 180 >gi|229825667|ref|ZP_04451736.1| hypothetical protein GCWU000182_01029 [Abiotrophia defectiva ATCC 49176] gi|229790230|gb|EEP26344.1| hypothetical protein GCWU000182_01029 [Abiotrophia defectiva ATCC 49176] Length = 286 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 27/122 (22%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64 E F T+ G G R +F GC + +C++C DT + G Sbjct: 24 ETFGTVDGPGT---RYVIF--LKGCPM-----------RCKYCHNPDT----WEFAGGTE 63 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 +D++ TGGEPL Q+ L + G ++T+G Sbjct: 64 MTLDEIFA--GYYSKKEFYRKGGITCTGGEPLGQLKFVTALFKRAKDEGIHTCLDTSGIY 121 Query: 123 EP 124 P Sbjct: 122 YP 123 >gi|253577953|ref|ZP_04855225.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850271|gb|EES78229.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 246 Score = 51.9 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 28/119 (23%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64 E F ++ G G R +F SGC + +C+FC DT + +G Sbjct: 14 ESFGSVDGPGV---RYVIF--LSGC-----------AMRCQFCHNPDT----WKMKQGEL 53 Query: 65 YNVDQLAD-LIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 Y D+L + + G K G ++GGEPLLQ+D + G ++T+G Sbjct: 54 YTADELLKKALRYKGYWGSKGG--ITVSGGEPLLQMDFLTEFFKKAKAEGVHTNLDTSG 110 >gi|119720485|ref|YP_920980.1| radical SAM domain-containing protein [Thermofilum pendens Hrk 5] gi|119525605|gb|ABL78977.1| Radical SAM domain protein [Thermofilum pendens Hrk 5] Length = 256 Score = 51.9 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 66/178 (37%), Gaps = 36/178 (20%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCV 89 GCNL +C FC V + + GR Y+ +++ + + I G + R Sbjct: 47 GCNL-----------RCVFCWGWRVRDRPSGAGRFYSPEEVYERLAS--IAGRRGYRLVR 93 Query: 90 LTGGEPLLQVDVPL--IQALNKRG-FEIAVETNGTI---EPPQGIDWICVSPKAGCDLKI 143 ++G EP + D L I+ L G F +ETNG + + + D S + + Sbjct: 94 ISGNEPTIAWDHLLRVIELLEADGRFRFVLETNGILIGADKSKARDLSKFS-SVHVRVSL 152 Query: 144 KGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLS 201 KG E + G E + LQ LE NL +P LS Sbjct: 153 KGASEEEF---------HLLTGARREFYRLQ------LEALRNLLDEGVPAHPAVMLS 195 >gi|38637902|ref|NP_942876.1| activase of anaerobic class III ribonucleotide reductase [Ralstonia eutropha H16] gi|32527240|gb|AAP85990.1| activase of anaerobic class III ribonucleotide reductase [Ralstonia eutropha H16] Length = 239 Score = 51.9 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 61/196 (31%), Gaps = 55/196 (28%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 GR+A VFC GC +C +C G R + Sbjct: 36 GRLAAVVFC--QGCP-----------WRCGYC-----HNPGLLDARAPSSIAWADVLAFL 77 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 + V +GGEP LQ + I + RGFE+A+ T G +DWI Sbjct: 78 QARQGLLDGVVFSGGEPTLQGALAGAIADVQARGFEVALHTAGMYPDRLPAILPQLDWIG 137 Query: 133 VSPKAG-----CDLKIKGGQE-----LK-------------------LVFPQVNVSPENY 163 + KA ++ G E L+ +++ E+ Sbjct: 138 LDLKAPLHRYDAITRVPGSGERAWESLRHWVASDVAGECRTTWHAGMFDIAELHALAESI 197 Query: 164 IGFDFERFSLQPMDGP 179 + ++LQ G Sbjct: 198 AALGVKHWALQECRGS 213 >gi|189500325|ref|YP_001959795.1| Radical SAM domain-containing protein [Chlorobium phaeobacteroides BS1] gi|189495766|gb|ACE04314.1| Radical SAM domain protein [Chlorobium phaeobacteroides BS1] Length = 417 Score = 51.9 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 24/95 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ--LADLIEEQWITGEKEGRYCV 89 CNL C + + GG+ ++D L IEE E R Sbjct: 70 CNLNC--------IHCS--------VNASPGGKTHLDPGVLRRCIEELCSL---EVRVVK 110 Query: 90 LTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTI 122 TGGEPL + L+QAL+ G + VET+GT+ Sbjct: 111 FTGGEPLTYPGIENFLLQALHA-GIFVEVETSGTL 144 >gi|315637210|ref|ZP_07892430.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Arcobacter butzleri JV22] gi|315478482|gb|EFU69195.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Arcobacter butzleri JV22] Length = 225 Score = 51.9 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 13/110 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 + +C +C D + ++ G+Y+ +++ D ++++ VL+GGE Sbjct: 23 CIVWHISCNMRCSYCYND--NLVFSRIGKYSHNEVLDFLKKRVTLLSA----VVLSGGEA 76 Query: 96 LLQVDVPLIQALNKRGFEIAVETNGT-------IEPPQGIDWICVSPKAG 138 + VP + + K G++I ++TNGT + +D+I + KA Sbjct: 77 TIHNLVPFCKEIKKLGYKIKLDTNGTNLKLIKKLISNNLLDFISLDFKAP 126 >gi|157737484|ref|YP_001490167.1| radical SAM domain-containing protein [Arcobacter butzleri RM4018] gi|157699338|gb|ABV67498.1| radical SAM domain protein [Arcobacter butzleri RM4018] Length = 234 Score = 51.9 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 13/110 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 + +C +C D + ++ G+Y+ +++ D ++++ VL+GGE Sbjct: 32 CIVWHISCNMRCSYCYND--NLVFSRIGKYSHNEVLDFLKKRVTLLSA----VVLSGGEA 85 Query: 96 LLQVDVPLIQALNKRGFEIAVETNGT-------IEPPQGIDWICVSPKAG 138 + VP + + K G++I ++TNGT + +D+I + KA Sbjct: 86 TIHNLVPFCKEIKKLGYKIKLDTNGTNLKLIKKLISNNLLDFISLDFKAP 135 >gi|15894268|ref|NP_347617.1| pyruvate-formate-lyase-activating enzyme [Clostridium acetobutylicum ATCC 824] gi|15023888|gb|AAK78957.1|AE007614_5 Pyruvate-formate-lyase-activating enzyme [Clostridium acetobutylicum ATCC 824] gi|325508395|gb|ADZ20031.1| Pyruvate-formate-lyase-activating enzyme [Clostridium acetobutylicum EA 2018] Length = 237 Score = 51.9 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC L +C FC DT G + ++L ++ Sbjct: 22 VF--FQGCRL-----------RCAFCHNPDT----WNVNSGEEISAEELMLKVKRYKNYF 64 Query: 82 EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 +K G +GGEPL+Q + ++ + G V+T G Sbjct: 65 DKSGGGVTCSGGEPLMQPEFLLEFLKLCKENGINTVVDTAG 105 >gi|4127321|emb|CAA10042.1| NrdG protein [Ralstonia eutropha H16] Length = 256 Score = 51.9 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 61/196 (31%), Gaps = 55/196 (28%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 GR+A VFC GC +C +C G R + Sbjct: 53 GRLAAVVFC--QGCP-----------WRCGYC-----HNPGLLDARAPSSIAWADVLAFL 94 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 + V +GGEP LQ + I + RGFE+A+ T G +DWI Sbjct: 95 QARQGLLDGVVFSGGEPTLQGALAGAIADVQARGFEVALHTAGMYPDRLPAILPQLDWIG 154 Query: 133 VSPKAG-----CDLKIKGGQE-----LK-------------------LVFPQVNVSPENY 163 + KA ++ G E L+ +++ E+ Sbjct: 155 LDLKAPLHRYDAITRVPGSGERAWESLRHWVASDVAGECRTTWHAGMFDIAELHALAESI 214 Query: 164 IGFDFERFSLQPMDGP 179 + ++LQ G Sbjct: 215 AALGVKHWALQECRGS 230 >gi|288942005|ref|YP_003444245.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Allochromatium vinosum DSM 180] gi|288897377|gb|ADC63213.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Allochromatium vinosum DSM 180] Length = 245 Score = 51.9 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 42/124 (33%), Gaps = 33/124 (26%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VFC GC +CR+C G + + LI+ I Sbjct: 40 VFC--QGCP-----------WRCRYC---------QNGDLLDTTAVESLIDWADIRAFLR 77 Query: 85 GRY-----CVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTI-----EPPQGIDWICV 133 R V +GGEP +Q ++ G+ I + T+G IDW+ + Sbjct: 78 QRVGLLDAVVFSGGEPTVQTALGAAMRETRALGYRIGLHTSGAYPERLRPLLSLIDWVGL 137 Query: 134 SPKA 137 KA Sbjct: 138 DIKA 141 >gi|187929187|ref|YP_001899674.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Ralstonia pickettii 12J] gi|187726077|gb|ACD27242.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Ralstonia pickettii 12J] Length = 237 Score = 51.9 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 28/128 (21%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G++A VF +GC +C +C T+ + D + ++ + Sbjct: 35 GQLAAVVFV--AGCP-----------WRCHYC---HNPHLQTRTRTLDWDDVFAFLQRRK 78 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 + V +GGEPL + +P LI+ + G++I + T G +DW+ Sbjct: 79 GLLDA----VVFSGGEPLSEPHLPQLIRDVRALGYKIGLHTGGIYPARLADVLPQVDWVG 134 Query: 133 VSPKAGCD 140 + K Sbjct: 135 LDIKTSAP 142 >gi|113969835|ref|YP_733628.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sp. MR-4] gi|113884519|gb|ABI38571.1| pyruvate formate-lyase activating enzyme [Shewanella sp. MR-4] Length = 246 Score = 51.9 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 60/195 (30%), Gaps = 44/195 (22%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F T+ G G RF GC +C++C DT Sbjct: 10 VESFGTVDGPG---------IRFITFMQGC-----------LMRCQYCHNRDT----WDL 45 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117 G VD+L I + +GGE +LQ + L +A K G ++ Sbjct: 46 DGGKEVQVDELMSQIISYRPFLDASNGGVTASGGEAILQAEFVAELFKACKKEGIHTCLD 105 Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177 TNG + + D + + L Q+N + +LQ + Sbjct: 106 TNGFVRKYTPV----------IDELLDNTDLVLLDIKQMNDDKHIELTKVSNHRTLQFAE 155 Query: 178 GPFLEENTNLAISYC 192 + N I Y Sbjct: 156 Y-LAKRNQPTWIRYV 169 >gi|226951033|ref|YP_002806124.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto] gi|226843056|gb|ACO85722.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto] Length = 278 Score = 51.9 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 64/175 (36%), Gaps = 38/175 (21%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDT--------------DF 54 F ++ G G A+F F GCN + + C+ C T D+ Sbjct: 12 FSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDY 66 Query: 55 VGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 V K G R + ++I++ T ++GGE LQ Sbjct: 67 VKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKKILKTKPFISG-ITVSGGECTLQK 125 Query: 100 D--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152 D + L + + G I V+TNG+++ + + A D+K +E K++ Sbjct: 126 DFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMVDVKSFDNEEHKML 180 >gi|168181046|ref|ZP_02615710.1| radical SAM domain protein [Clostridium botulinum NCTC 2916] gi|182668158|gb|EDT80137.1| radical SAM domain protein [Clostridium botulinum NCTC 2916] Length = 279 Score = 51.9 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 64/175 (36%), Gaps = 38/175 (21%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDT--------------DF 54 F ++ G G A+F F GCN + + C+ C T D+ Sbjct: 13 FSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDY 67 Query: 55 VGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 V K G R + ++I++ T ++GGE LQ Sbjct: 68 VKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKKILKTKPFISG-ITVSGGECTLQK 126 Query: 100 D--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152 D + L + + G I V+TNG+++ + + A D+K +E K++ Sbjct: 127 DFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMVDVKSFDNEEHKML 181 >gi|323487361|ref|ZP_08092660.1| hypothetical protein HMPREF9474_04411 [Clostridium symbiosum WAL-14163] gi|323399322|gb|EGA91721.1| hypothetical protein HMPREF9474_04411 [Clostridium symbiosum WAL-14163] Length = 230 Score = 51.9 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 24/101 (23%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWIT 80 +F GCN +C FC +G G ++ +++ ++++ Sbjct: 20 ATIF--LGGCNF-----------RCPFC----HNSDLLEGMDGLFSKEEVLTFLKKRAGI 62 Query: 81 GEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 E +TGGEP L D+ P I+ + G + ++TNG Sbjct: 63 LEG----VCITGGEPTLHRDLEPFIREIRSLGLLVKLDTNG 99 >gi|312195497|ref|YP_004015558.1| hopanoid biosynthesis associated radical SAM protein HpnH [Frankia sp. EuI1c] gi|311226833|gb|ADP79688.1| hopanoid biosynthesis associated radical SAM protein HpnH [Frankia sp. EuI1c] Length = 398 Score = 51.6 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C R V+Q ++E L Sbjct: 38 CNL-----------ACVGCG-KIQHTADVLKRRMPVEQALAAVDECG------APVVCLA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ V ++ L +R + + TN + P+ ID + SP + I G +E Sbjct: 80 GGEPLMHPQVEEIVAGLVQRKKFVYLCTN-ALLLPKKIDKLRPSPYLSLAVHIDGLEE 136 >gi|237727284|ref|ZP_04557765.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229434140|gb|EEO44217.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 368 Score = 51.6 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 8/78 (10%) Query: 50 CDTDFVGIQ----GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104 CD F+ + GG + Q D E+ G + +LTGGEP+L L Sbjct: 39 CDMCFIHTERNVVERHGGLLPLQQWLDWAEQLQDMG---TLFILLTGGEPMLYPHFKELY 95 Query: 105 QALNKRGFEIAVETNGTI 122 L + GF + + TNGT+ Sbjct: 96 TRLREMGFILTLNTNGTL 113 >gi|167758384|ref|ZP_02430511.1| hypothetical protein CLOSCI_00724 [Clostridium scindens ATCC 35704] gi|167664281|gb|EDS08411.1| hypothetical protein CLOSCI_00724 [Clostridium scindens ATCC 35704] Length = 241 Score = 51.6 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 26/118 (22%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64 E F ++ G G R +F SGC + +C+FC DT G Sbjct: 10 ESFGSVDGPGV---RYVIF--TSGC-----------AMRCQFCHNPDT----WNKRAGTP 49 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 Y D+L + + +G ++GGEPLLQ+D + L + + G A++T+G Sbjct: 50 YTADELIEKALKYRSYWGSKGG-ITVSGGEPLLQIDFLLELFERARQEGIHTALDTSG 106 >gi|15669412|ref|NP_248222.1| pyruvate formate-lyase activating enzyme [Methanocaldococcus jannaschii DSM 2661] gi|37999505|sp|Q58624|Y1227_METJA RecName: Full=Uncharacterized protein MJ1227 gi|1591858|gb|AAB99230.1| pyruvate formate-lyase activating enzyme (act) [Methanocaldococcus jannaschii DSM 2661] Length = 240 Score = 51.6 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 30/125 (24%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +F GCN+ +C +C ++ +G V+++ + I+ + Sbjct: 24 IF--LYGCNM-----------KCPYCHNLKFMLEHKRG--MTVEEIFNDIDFLFADA--- 65 Query: 85 GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSP 135 V++GGEP LQ D + + + ++GF + ++TNGT ID++ + Sbjct: 66 ---IVISGGEPTLQKDAVIEIARYAKEKGFPVKIDTNGTHPEVIEELIKNKLIDYVAIDV 122 Query: 136 KAGCD 140 K D Sbjct: 123 KCRFD 127 >gi|52548364|gb|AAU82213.1| pyruvate-formate lyase-activating enzyme [uncultured archaeon GZfos11H11] Length = 230 Score = 51.6 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 18/100 (18%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF GCN +C +C + ++ + I T + Sbjct: 22 VF--TQGCNF-----------RCPYC----HNPELVDPKLFSHPIAEEDILAFLQTRRGK 64 Query: 85 GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 +TGGEP LQ D+ + + F + ++TNG+ Sbjct: 65 LDAVEITGGEPTLQPDLIDFTKKIKSLNFLVKLDTNGSNP 104 >gi|114047065|ref|YP_737615.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sp. MR-7] gi|113888507|gb|ABI42558.1| pyruvate formate-lyase activating enzyme [Shewanella sp. MR-7] Length = 246 Score = 51.6 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 60/195 (30%), Gaps = 44/195 (22%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F T+ G G RF GC +C++C DT Sbjct: 10 VESFGTVDGPG---------IRFITFMQGC-----------LMRCQYCHNRDT----WDL 45 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117 G VD+L I + +GGE +LQ + L +A K G ++ Sbjct: 46 DGGKEVQVDELMSQIISYRPFLDASNGGVTASGGEAILQAEFVAELFKACKKEGIHTCLD 105 Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177 TNG + + D + + L Q+N + +LQ + Sbjct: 106 TNGFVRKYTPV----------IDELLDNTDLVLLDIKQMNDDKHIELTKVSNHRTLQFAE 155 Query: 178 GPFLEENTNLAISYC 192 + N I Y Sbjct: 156 Y-LAKRNQPTWIRYV 169 >gi|157961496|ref|YP_001501530.1| pyruvate formate lyase-activating enzyme 1 [Shewanella pealeana ATCC 700345] gi|157846496|gb|ABV86995.1| pyruvate formate-lyase activating enzyme [Shewanella pealeana ATCC 700345] Length = 246 Score = 51.6 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 60/194 (30%), Gaps = 44/194 (22%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F T+ G G RF GC +C +C DT Sbjct: 11 ESFGTVDGPG---------IRFITFMQGC-----------LMRCLYCHNRDT----WDLH 46 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G VD L I E G +GGE ++Q D L +A K G ++T Sbjct: 47 GGKEMKVDDLMSQIISYRPFLEASGGGVTASGGEAIIQADFVAELFKACKKEGIHTCLDT 106 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178 NG + I D + + L Q++ + + + +LQ + Sbjct: 107 NGFVRKHTPI----------IDELLDNTDLVMLDIKQIDDAKHIDLTNVSNQRTLQFAE- 155 Query: 179 PFLEENTNLAISYC 192 + I Y Sbjct: 156 HLHKRGQKAWIRYV 169 >gi|146303294|ref|YP_001190610.1| radical SAM domain-containing protein [Metallosphaera sedula DSM 5348] gi|145701544|gb|ABP94686.1| Radical SAM domain protein [Metallosphaera sedula DSM 5348] Length = 366 Score = 51.6 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 25/111 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C G+ + L+ I + ++ +L+ Sbjct: 39 CNL-----------RCLHC------YSGSGTQLFQDLPLSTWINAVKQASDMGVKHILLS 81 Query: 92 GGEPLLQVDVPLIQALN-KRGFEIAVETNGTI-------EPPQGIDWICVS 134 GGEPL + D+ LI +RG + + TNGT+ E +D++ VS Sbjct: 82 GGEPLARRDLHLIAREAWERGIRVELSTNGTMLTRERLEELKNYVDYVGVS 132 >gi|125973165|ref|YP_001037075.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium thermocellum ATCC 27405] gi|256003963|ref|ZP_05428949.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium thermocellum DSM 2360] gi|281417360|ref|ZP_06248380.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium thermocellum JW20] gi|125713390|gb|ABN51882.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium thermocellum ATCC 27405] gi|255992091|gb|EEU02187.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium thermocellum DSM 2360] gi|281408762|gb|EFB39020.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium thermocellum JW20] gi|316940606|gb|ADU74640.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium thermocellum DSM 1313] Length = 229 Score = 51.6 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 24/116 (20%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCN+ C +C + G +D D + E + V+ Sbjct: 26 GCNM-----------NCFYC---HNKTLISGGNEEFIDN--DEVLELLVKRRGFIDGVVI 69 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSPKAG 138 +GGEP LQ D+ ++ + G+ + ++TNGT +D+I + KA Sbjct: 70 SGGEPTLQKDLEGFLEKVKSLGYAVKLDTNGTNPHVVENLVQNGLVDYIAMDVKAP 125 >gi|218283500|ref|ZP_03489490.1| hypothetical protein EUBIFOR_02080 [Eubacterium biforme DSM 3989] gi|218215768|gb|EEC89306.1| hypothetical protein EUBIFOR_02080 [Eubacterium biforme DSM 3989] Length = 294 Score = 51.6 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 42/243 (17%), Positives = 76/243 (31%), Gaps = 61/243 (25%) Query: 3 LYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSA------------ 45 + + E F T G G VF GC L W + Sbjct: 1 MIRVSNIEKFATHDGPGIRT---TVF--LKGCPLHCPWCANPETWKMEPTLLHDERKCVQ 55 Query: 46 ----------------------QCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 +C +C D G +D++ + + Sbjct: 56 CKTCMYMCAQEAISFPFQWDIDKCIYCKKCEDACLQDAISFVGKDIEIDEVIKEVLKDKD 115 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP---QGIDWICVS 134 ++ ++GGEP +Q D + L++ + G +AVET G Q + +I + Sbjct: 116 YFDQSNGGVTISGGEPFMQFDAFLELVKQCKENGLHVAVETTGNYSLDKLEQALPYIDL- 174 Query: 135 PKAGCDLKIKGGQELKLVF-PQVNVSPENYIGFDF----ERFSLQPMDGPFLEENTNLAI 189 DLK ++LK V +++ N+ + P+ F ++ I Sbjct: 175 --FLMDLKHLDAKKLKDVTGANLDLILNNFRYLAKYCPNKVIVRMPVIPRFNDDICEEVI 232 Query: 190 SYC 192 +C Sbjct: 233 KFC 235 >gi|28897766|ref|NP_797371.1| pyruvate formate lyase-activating enzyme 1 [Vibrio parahaemolyticus RIMD 2210633] gi|153837337|ref|ZP_01990004.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus AQ3810] gi|260363808|ref|ZP_05776563.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus K5030] gi|260876932|ref|ZP_05889287.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus AN-5034] gi|260897926|ref|ZP_05906422.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus Peru-466] gi|260903461|ref|ZP_05911856.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus AQ4037] gi|28805979|dbj|BAC59255.1| pyruvate formate-lyase 1 activating enzyme [Vibrio parahaemolyticus RIMD 2210633] gi|149749368|gb|EDM60141.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus AQ3810] gi|308085486|gb|EFO35181.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus Peru-466] gi|308093910|gb|EFO43605.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus AN-5034] gi|308110360|gb|EFO47900.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus AQ4037] gi|308113908|gb|EFO51448.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus K5030] gi|328473257|gb|EGF44105.1| pyruvate formate lyase-activating enzyme 1 [Vibrio parahaemolyticus 10329] Length = 246 Score = 51.6 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 54/161 (33%), Gaps = 28/161 (17%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT G V+++ + Sbjct: 25 VF--LQGC-----------LMRCKYCHNRDT----WDTHDGKEVTVEEIIAEAKSYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAG 138 G +GGE +LQ + +A + G ++TNG I + ID + Sbjct: 68 NASGGGITCSGGEAMLQPEFVRDFFRAAHAEGIHTCLDTNGYIRKHTEVIDEVL----DA 123 Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 DL + + +K Q + N DF R L + Sbjct: 124 TDLVMLDIKHMKDEIHQDFIGVSNRRTLDFAR-YLHKIGQK 163 >gi|117920002|ref|YP_869194.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sp. ANA-3] gi|117612334|gb|ABK47788.1| pyruvate formate-lyase activating enzyme [Shewanella sp. ANA-3] Length = 246 Score = 51.6 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 60/195 (30%), Gaps = 44/195 (22%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F T+ G G RF GC +C++C DT Sbjct: 10 VESFGTVDGPG---------IRFITFMQGC-----------LMRCQYCHNRDT----WDL 45 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117 G VD+L I + +GGE +LQ + L +A K G ++ Sbjct: 46 DGGKEVQVDELMSQIISYRPFLDASNGGVTASGGEAILQAEFVAELFKACKKEGIHTCLD 105 Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177 TNG + + D + + L Q+N + +LQ + Sbjct: 106 TNGFVRKYTPV----------IDELLDNTDLVLLDIKQMNDDKHIELTKVSNHRTLQFAE 155 Query: 178 GPFLEENTNLAISYC 192 + N I Y Sbjct: 156 Y-LAKRNQPTWIRYV 169 >gi|293605242|ref|ZP_06687628.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Achromobacter piechaudii ATCC 43553] gi|292816298|gb|EFF75393.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Achromobacter piechaudii ATCC 43553] Length = 264 Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 28/127 (22%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G++A VF SGC +C +C T+ RY+ +E + Sbjct: 62 GQLAAVVFI--SGCP-----------WRCHYC---HNTELQTRAARYDWRDARAFLESRA 105 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 + V +GGEPL + +P LI+ + + G+ + + T G + +DWI Sbjct: 106 GLLDA----VVFSGGEPLSEPRLPSLIRDVRRMGYRVGLHTAGIYPLRLADVMRHLDWIG 161 Query: 133 VSPKAGC 139 + KA Sbjct: 162 LDIKADA 168 >gi|281355888|ref|ZP_06242381.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Victivallis vadensis ATCC BAA-548] gi|281317257|gb|EFB01278.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Victivallis vadensis ATCC BAA-548] Length = 238 Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 18/100 (18%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF GCNL +C FC + + + +E + E Sbjct: 22 VF--TGGCNL-----------RCPFCHNPCLVFDPASQPKVTEKEFFGFLERRKGLLEG- 67 Query: 85 GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 V++GGEP+LQ D+ P ++ + K GF V++NGT Sbjct: 68 ---VVISGGEPMLQPDLVPFVERIRKSGFLAKVDSNGTFP 104 >gi|262038830|ref|ZP_06012179.1| pyruvate formate-lyase-activating enzyme [Leptotrichia goodfellowii F0264] gi|261747163|gb|EEY34653.1| pyruvate formate-lyase-activating enzyme [Leptotrichia goodfellowii F0264] Length = 243 Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 26/153 (16%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+++F F GCN C +C +T V + +V ++ D+++E Sbjct: 20 RLSIF--FQGCNF-----------DCLYCHNPETIEVFGENKVPEEISVMEIDDILKEIE 66 Query: 79 ITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKR--GFEIAVETNGTIEP--PQGIDWIC 132 ++GGE LQ L +A+ KR V++NG+I +++ Sbjct: 67 EVAPFISG-ITVSGGECSLQWKFLTELFKAVKKRWERMTCFVDSNGSIPLWTEDKKEFLS 125 Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG 165 V+ K D+K E + V VS EN I Sbjct: 126 VTDKIMLDIK--AFDEKDHILM-VGVSNENVIK 155 >gi|194333737|ref|YP_002015597.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Prosthecochloris aestuarii DSM 271] gi|194311555|gb|ACF45950.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Prosthecochloris aestuarii DSM 271] Length = 251 Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 29/125 (23%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY- 87 +GCNL +C +C + +L E +T R Sbjct: 43 TAGCNL-----------RCIYC------HNPELVLPDRIQRLGAEERETIVTWLVRNRML 85 Query: 88 ---CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSPK 136 V+TGGEPLL +P L+ + + G + ++TNGT + +D + + K Sbjct: 86 LDAVVVTGGEPLLHPALPGLLGWIRELGLAVKLDTNGTFPSRLQAILTEELVDHVAMDLK 145 Query: 137 AGCDL 141 A D Sbjct: 146 APLDY 150 >gi|269967633|ref|ZP_06181683.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus 40B] gi|269827720|gb|EEZ82004.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus 40B] Length = 246 Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 53/162 (32%), Gaps = 36/162 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT G V+++ + Sbjct: 25 VF--LQGC-----------LMRCKYCHNRDT----WDTHDGKEVTVEEIISEAKSYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWICVS 134 G +GGE +LQ + +A G ++TNG T + +D Sbjct: 68 NASGGGVTCSGGEAMLQPEFVRDFFRAAKTEGIHTCLDTNGYVRKHTDVIDEVLD----- 122 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176 DL + + +K Q + N DF R LQ + Sbjct: 123 ---ATDLVMLDIKHMKDEVHQDLIGVSNRRTLDFAR-YLQKI 160 >gi|291541970|emb|CBL15080.1| pyruvate formate-lyase 1-activating enzyme [Ruminococcus bromii L2-63] Length = 251 Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 21/115 (18%) Query: 8 EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66 E F ++ G G +F SGC + +C+FC Y Sbjct: 14 ETFGSVDGPGVRFV----IF--LSGC-----------AMRCQFCHNPDTWKHDENTVEYT 56 Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 D+L + K ++GGEPLLQ+D + L + K+G ++T+ Sbjct: 57 ADELLNKALAYRPY-WKNKGGITVSGGEPLLQIDFLLDLFKKAKKQGVNTCIDTS 110 >gi|168187740|ref|ZP_02622375.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum C str. Eklund] gi|169294396|gb|EDS76529.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum C str. Eklund] Length = 235 Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 23/101 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC L +C FC DT G + ++L I Sbjct: 24 VF--LQGCPL-----------RCSFCHNPDT----WNFNIGDKITPEKLVKKIIRFKPYF 66 Query: 82 EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120 + G +GGE L+Q + L ++ + A++T+G Sbjct: 67 KNNGG-VTFSGGESLMQPEFLLKTLKLCKENNIHTAIDTSG 106 >gi|126460429|ref|YP_001056707.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|126250150|gb|ABO09241.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548] Length = 261 Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 14/91 (15%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL G + T FV + G +++A ++E I + R + Sbjct: 53 GCNLRCGMCWAWRN-------TSFVL---SGGVWMAPEEVAARLDE--IAKARGFRQVRI 100 Query: 91 TGGEPLLQVDVPL-IQALNKRGFEIAVETNG 120 +GGEPL+ L + L + I VETNG Sbjct: 101 SGGEPLIAPRHLLEVADLLSKYIFI-VETNG 130 >gi|311896173|dbj|BAJ28581.1| putative pyruvate formate-lyase-activating enzyme [Kitasatospora setae KM-6054] Length = 256 Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 23/102 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF +GC L C +C DT + G R D++ + Sbjct: 37 VF--LAGCPL-----------NCLYCHNPDTMRMR----NGTRTGADEVVAEASKYTAFI 79 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQAL-NKRGFEIAVETNG 120 G ++GGEPLLQ D L ++ G A++T+G Sbjct: 80 HAAGGGATVSGGEPLLQPDFAGELFHRFKHELGLHTALDTSG 121 >gi|268324698|emb|CBH38286.1| conserved hypothetical protein, radical SAM superfamily [uncultured archaeon] Length = 271 Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 16/94 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 SGCN +C+ C F + G + V+QL L+++ Sbjct: 21 LSGCNF-----------KCKGC---FSLARNPIGEQMTVEQLISLVKDSASGCYSALEEA 66 Query: 89 VLTGGEPLL--QVDVPLIQALNKRGFEIAVETNG 120 V+TGGEP L + L+ L + I ++TNG Sbjct: 67 VITGGEPTLNRHYLIDLVSQLKEFVGWIVLDTNG 100 >gi|2500056|sp|Q46267|PFLA_CLOPA RecName: Full=Pyruvate formate-lyase-activating enzyme; Short=PFL-activating enzyme; AltName: Full=Formate-C-acetyltransferase-activating enzyme gi|1072362|emb|CAA63749.1| pyruvate-formate-lyase-activating enzyme [Clostridium pasteurianum] Length = 238 Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC L +C +C DT G ++L + Sbjct: 24 VF--FQGCGL-----------RCSYCHNPDT----WNMAGGKELTAEELLKKLLRFKPYF 66 Query: 82 EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 ++ G +GGE LLQ + +++ ++G A++T G Sbjct: 67 DRSGGGVTFSGGEVLLQPEFLIDILKLCKEQGIHTAIDTAG 107 >gi|145630302|ref|ZP_01786083.1| hypothetical protein CGSHi22421_06882 [Haemophilus influenzae R3021] gi|144984037|gb|EDJ91474.1| hypothetical protein CGSHi22421_06882 [Haemophilus influenzae R3021] Length = 262 Score = 51.6 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 30/151 (19%) Query: 3 LYSIKEIFLTL---------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD 53 + ++ EIF+ L +G+G ++F GC L C +C Sbjct: 1 MTALSEIFVPLHRIIPFSNVEGQGNRT---SIF--LQGCKL-----------NCLYCHNP 44 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRG 111 + T+ + + +Q + R ++GGEP + VPL +AL +G Sbjct: 45 ETIPRYTESAKLVS---LQYLYDQVMEATPFIRGVTVSGGEPTIHHKKLVPLFKALRSKG 101 Query: 112 FEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 ++++G E + I V+ K DLK Sbjct: 102 LTCYLDSSGFFEFDRIRSLIDVTDKFLFDLK 132 >gi|150015206|ref|YP_001307460.1| glycyl-radical activating family protein [Clostridium beijerinckii NCIMB 8052] gi|149901671|gb|ABR32504.1| glycyl-radical enzyme activating protein family [Clostridium beijerinckii NCIMB 8052] Length = 311 Score = 51.6 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 49/158 (31%), Gaps = 54/158 (34%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------QCRFCD------- 51 F T GEG +F GC L Q+ +C CD Sbjct: 18 FSTHDGEGIRT---TIF--LKGCPLKCVWCQNPEGISPKEQLIHFENKCINCDLCIKKCS 72 Query: 52 --------------------------TDFVGIQG--TKGGRYNVDQLADLIEEQWITGEK 83 TD Y +D++ ++ + + Sbjct: 73 NQSVIRENNKICVVQDKCIDEQNEIVTDICPTGALTMDSKNYTLDEVIEIALKDKAFFKY 132 Query: 84 EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 G L+GGEPL Q + V L++ L + G A+ET+ Sbjct: 133 GGG-VTLSGGEPLYQKEFVVVLLKMLKEAGINTAIETS 169 >gi|212634770|ref|YP_002311295.1| pyruvate formate lyase-activating enzyme 1 [Shewanella piezotolerans WP3] gi|212556254|gb|ACJ28708.1| Pyruvate formate-lyase 1 activating enzyme [Shewanella piezotolerans WP3] Length = 246 Score = 51.6 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 62/194 (31%), Gaps = 44/194 (22%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F T+ G G RF GC +C++C DT Sbjct: 11 ESFGTVDGPG---------IRFITFMQGC-----------LMRCQYCHNRDT----WDLH 46 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G VD+L I E G +GGE +LQ + L +A K G ++T Sbjct: 47 GGKEIKVDELMSQIISYRPFLEASGGGVTASGGEAVLQPEFVAELFKACKKEGIHTCLDT 106 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178 NG + I D + + L Q+N + + +LQ + Sbjct: 107 NGFVRKYTPI----------IDELLDNTDLVLLDIKQINDEKHIDLTKVSNQRTLQFAE- 155 Query: 179 PFLEENTNLAISYC 192 + N I Y Sbjct: 156 HLHKRNQKTWIRYV 169 >gi|213405157|ref|XP_002173350.1| anaerobic ribonucleoside triphosphate reductase [Schizosaccharomyces japonicus yFS275] gi|212001397|gb|EEB07057.1| anaerobic ribonucleoside triphosphate reductase [Schizosaccharomyces japonicus yFS275] Length = 826 Score = 51.6 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 31/115 (26%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCV 89 CNL C +C +G R + + + +I + V Sbjct: 636 CNL-----------ACPWC----HNGPIVRGKRDSFTAEDVFRIITA------SRHKNLV 674 Query: 90 LTGGEPLLQV-DVPLIQALNKRGFEIAVETNG-------TIEPPQGIDWICVSPK 136 ++GGEP + +P ++ L K G + +++NG TI + +D++ + K Sbjct: 675 ISGGEPTIHPQLIPFLRLLKKAGISVKLDSNGTSPESLKTIFAEKLVDFVAMDVK 729 >gi|115525179|ref|YP_782090.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Rhodopseudomonas palustris BisA53] gi|115519126|gb|ABJ07110.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Rhodopseudomonas palustris BisA53] Length = 219 Score = 51.6 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 42/124 (33%), Gaps = 24/124 (19%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 VFC GC C +C + + + Q+ +E + + Sbjct: 26 ATVFC--QGCP-----------WDCSYCHNPHL-LPVMGEAAWPWAQVLAFLERRRGLLD 71 Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPK 136 V +GGEP LQ +P I + GF I + T G +DW+ K Sbjct: 72 A----VVFSGGEPTLQTALPQAIATVRAMGFRIGLHTGGAYPRRLAGVLPLLDWVGFDVK 127 Query: 137 AGCD 140 A + Sbjct: 128 APFE 131 >gi|302343932|ref|YP_003808461.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075] gi|301640545|gb|ADK85867.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075] Length = 338 Score = 51.6 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 57/169 (33%), Gaps = 29/169 (17%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG-RYCVLTGGEPLLQVD 100 R + C FC + + + +L+E ++G R ++GGEP + Sbjct: 23 RCNNNCLFC-----YDKDSPVEALESVSVNELVERTLAEAARQGIRRVGVSGGEPTIYPG 77 Query: 101 V-PLIQALNKRGFEIAVETNG-TIE--------PPQGIDWICVSPKAGCDLKIKGGQELK 150 + + L RG ++ TNG T++ G+D VS DL E Sbjct: 78 IVDFARRLRGRGLATSILTNGRTLKDAAWLEELLDAGVDHFHVS--VHSDL----AHEHD 131 Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199 V + G L +D +L I++ +R Sbjct: 132 AVTRAPGSFDDTLQG-------LCNIDQARRRRRLDLTIAHVMHRRNYR 173 >gi|229042347|ref|ZP_04190097.1| hypothetical protein bcere0027_4160 [Bacillus cereus AH676] gi|229108114|ref|ZP_04237739.1| hypothetical protein bcere0018_4060 [Bacillus cereus Rock1-15] gi|228675389|gb|EEL30608.1| hypothetical protein bcere0018_4060 [Bacillus cereus Rock1-15] gi|228727006|gb|EEL78213.1| hypothetical protein bcere0027_4160 [Bacillus cereus AH676] Length = 243 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKAAGIHTTIDSSG 107 >gi|168183531|ref|ZP_02618195.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum Bf] gi|237796670|ref|YP_002864222.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum Ba4 str. 657] gi|182673365|gb|EDT85326.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum Bf] gi|229263272|gb|ACQ54305.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum Ba4 str. 657] Length = 232 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 36/151 (23%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G + D++ + Sbjct: 22 VF--FQGC-----------QLRCVYCHNPDT----WDFNAGIEISSDEVLKKVLRYKPY- 63 Query: 82 EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT-----IEPPQGIDWICVS 134 K+ +GGEPL+Q + +++ +G A++T+G E Q +D + + Sbjct: 64 FKQVGGITCSGGEPLMQPEFLLEILKKCKNQGIHTALDTSGVGIGNYKEILQYVDLVILD 123 Query: 135 PKAGCDLK--------IKGGQELKLVFPQVN 157 K + K ++ + K V ++N Sbjct: 124 IKHIEEEKYISICGKNMEEFNKFKRVVNKLN 154 >gi|30018698|ref|NP_830329.1| pyruvate formate-lyase activating enzyme [Bacillus cereus ATCC 14579] gi|229125942|ref|ZP_04254967.1| hypothetical protein bcere0015_4060 [Bacillus cereus BDRD-Cer4] gi|29894239|gb|AAP07530.1| Pyruvate formate-lyase activating enzyme [Bacillus cereus ATCC 14579] gi|228657600|gb|EEL13413.1| hypothetical protein bcere0015_4060 [Bacillus cereus BDRD-Cer4] Length = 243 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKAAGIHTTIDSSG 107 >gi|119774634|ref|YP_927374.1| pyruvate formate lyase-activating enzyme 1 [Shewanella amazonensis SB2B] gi|119767134|gb|ABL99704.1| (Formate-C-acetyltransferase)-activating enzyme [Shewanella amazonensis SB2B] Length = 246 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 61/196 (31%), Gaps = 46/196 (23%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F T+ G G RF GC +C++C DT Sbjct: 10 VESFGTVDGPG---------IRFITFMQGC-----------LMRCQYCHNRDT----WDL 45 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117 G VD+L I + G +GGE +LQ + L +A G ++ Sbjct: 46 DGGKEMQVDELMSQILSYRPFLDASGGGVTASGGEAILQAEFVADLFKACRAEGIHTCLD 105 Query: 118 TNG-TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176 TNG + ID + + + L ++ + + +LQ Sbjct: 106 TNGFVRKYTPAIDVL-----------LDNTDLVLLDIKHIDDAKHQDLTKVSNHRTLQFA 154 Query: 177 DGPFLEENTNLAISYC 192 + + + I Y Sbjct: 155 EY-LAKRDQKTWIRYV 169 >gi|309389450|gb|ADO77330.1| pyruvate formate-lyase activating enzyme [Halanaerobium praevalens DSM 2228] Length = 242 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 24/109 (22%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C++C DT + G + + L I + Sbjct: 20 IRFVVFTQGCPL-----------RCQYCHNPDT----WKLKAGTKVSTSTLIKKIIKIKP 64 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQ 126 E G ++GGEP +Q + + L++ A++T+G +E Q Sbjct: 65 YLEGAGGGLTISGGEPTMQPEFTLDLLKKAKAENLHTALDTSGFVEIEQ 113 >gi|212694739|ref|ZP_03302867.1| hypothetical protein BACDOR_04271 [Bacteroides dorei DSM 17855] gi|237710987|ref|ZP_04541468.1| radical SAM domain-containing protein [Bacteroides sp. 9_1_42FAA] gi|212662718|gb|EEB23292.1| hypothetical protein BACDOR_04271 [Bacteroides dorei DSM 17855] gi|229454831|gb|EEO60552.1| radical SAM domain-containing protein [Bacteroides sp. 9_1_42FAA] Length = 368 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 8/78 (10%) Query: 50 CDTDFVGIQGT----KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104 CD F+ + + GG + Q D E+ G + +LTGGEP+L L Sbjct: 39 CDMCFIRTERSVVERHGGLSPLQQWLDWAEQLQDMG---TLFILLTGGEPMLYPHFKELY 95 Query: 105 QALNKRGFEIAVETNGTI 122 L + GF + + TNGT+ Sbjct: 96 TRLREMGFILTLNTNGTL 113 >gi|169333654|ref|ZP_02860847.1| hypothetical protein ANASTE_00038 [Anaerofustis stercorihominis DSM 17244] gi|169259648|gb|EDS73614.1| hypothetical protein ANASTE_00038 [Anaerofustis stercorihominis DSM 17244] Length = 303 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 9/132 (6%) Query: 45 AQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDV 101 ++C C D + G +D++ E + E L+GGEPL Q Sbjct: 87 SKCMLCVDNCYATALKVYGKNLTIDEIVSKCMEDKLFYETSNGGVTLSGGEPLFQFEAAH 146 Query: 102 PLIQALNKRGFEIAVETNG--TIEPPQGI-DWICVSPKAGCDLKIKGGQELKLVFPQVNV 158 ++ L +G A+ET G + E + I D++ + D+K + K + N Sbjct: 147 EILSRLKSKGIHTAIETTGYVSNENIKKIMDYVDL---FLFDIKAVNIDKHKRLTGVDNH 203 Query: 159 SPENYIGFDFER 170 + + + E Sbjct: 204 IIHDNLRYLDEH 215 >gi|265750577|ref|ZP_06086640.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263237473|gb|EEZ22923.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 368 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 8/78 (10%) Query: 50 CDTDFVGIQGT----KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104 CD F+ + + GG + Q D E+ G + +LTGGEP+L L Sbjct: 39 CDMCFIRTERSVVERHGGLSPLQQWLDWAEQLQDMG---TLFILLTGGEPMLYPHFKELY 95 Query: 105 QALNKRGFEIAVETNGTI 122 L + GF + + TNGT+ Sbjct: 96 TRLREMGFILTLNTNGTL 113 >gi|225569332|ref|ZP_03778357.1| hypothetical protein CLOHYLEM_05414 [Clostridium hylemonae DSM 15053] gi|225162131|gb|EEG74750.1| hypothetical protein CLOHYLEM_05414 [Clostridium hylemonae DSM 15053] Length = 260 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 19/109 (17%) Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-VGIQGTKGGRYNVDQLADL 73 GEG +F +GC L C +C + V+++ D Sbjct: 30 GEGIRTN---IF--LAGCPL-----------ACAWCSNPEGQSLHNAMTSCMTVEEVVDK 73 Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG 120 +++Q I G +GGE +Q + L L G +A+ET G Sbjct: 74 VKKQMIFYRISGGGVTFSGGEATVQQEFLRRLSYRLYDMGISLAIETCG 122 >gi|194437731|ref|ZP_03069826.1| pyruvate-formate lyase-activating enzyme [Escherichia coli 101-1] gi|194423227|gb|EDX39219.1| pyruvate-formate lyase-activating enzyme [Escherichia coli 101-1] Length = 305 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 KG R +V + +E++ + G L+GGEPL Q + L++A +G+ +ET Sbjct: 107 KGKRMSVTAVMRELEKEENLYRRSGGGITLSGGEPLAQPEFARELLKACKAKGWHTTIET 166 Query: 119 NG 120 +G Sbjct: 167 SG 168 >gi|114568857|ref|YP_755537.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Maricaulis maris MCS10] gi|114339319|gb|ABI64599.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Maricaulis maris MCS10] Length = 239 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 30/123 (24%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC L +C +C D V GR ++A ++E+ Sbjct: 30 VF--LQGCPL-----------RCVYCHNPDLLPVHADTEIDGR----EIAARLKERRGLL 72 Query: 82 EKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSP 135 + V +GGEPL+Q + + GF++ + T+G +DW+ Sbjct: 73 QA----VVFSGGEPLVQSGLAAAMDHVRSLGFKVGLHTSGISPDRFQRLRDRVDWVGFDI 128 Query: 136 KAG 138 KA Sbjct: 129 KAP 131 >gi|288927096|ref|ZP_06420984.1| pyruvate formate-lyase 1-activating enzyme [Prevotella buccae D17] gi|288336123|gb|EFC74516.1| pyruvate formate-lyase 1-activating enzyme [Prevotella buccae D17] Length = 243 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 34/121 (28%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F ++ G G RF GC + +CRFC D+ G+ Sbjct: 13 ETFGSVDGPG---------IRFLIFLQGCPM-----------RCRFCHNPDSWQTGV--- 49 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 G + D+L D E + + ++GGE L+Q+D L + ++RG ++T Sbjct: 50 -GEKMTTDELLDR-AEHYRSYWGREGGITVSGGEALMQIDFLTELFRKAHERGINTCLDT 107 Query: 119 N 119 + Sbjct: 108 S 108 >gi|19703606|ref|NP_603168.1| pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328725|ref|ZP_06871240.1| pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19713712|gb|AAL94467.1| Pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296154162|gb|EFG94965.1| pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 243 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 26/103 (25%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C +C DT K Y +++ + E Sbjct: 19 IRFVVFMQGCPL-----------RCLYCHNVDT---WELKDKNYIYTPEEV---LAELNK 61 Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120 ++GGEPLLQ L + + G A++T+G Sbjct: 62 VKAFLSGGITISGGEPLLQSSFVLEVFKLCKENGIHTALDTSG 104 >gi|296109167|ref|YP_003616116.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanocaldococcus infernus ME] gi|295433981|gb|ADG13152.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanocaldococcus infernus ME] Length = 228 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 27/118 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +F SGCN +C +C ++ ++++ + + ++ + Sbjct: 21 IF--LSGCNF-----------RCSYC----HNLENILKIKHSI-TVKEFLKRVDPLLTEA 62 Query: 85 GRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPK 136 V++GGEP LQ + + L + G+ + ++TNGT + +D+I + K Sbjct: 63 ---IVISGGEPTLQEEIIELAREAKDLGYLVKLDTNGTRPEIVSKILEYLDYIAIDVK 117 >gi|299069358|emb|CBJ40624.1| putative ribonucleotide reductase activating transmembrane protein (nrdG) [Ralstonia solanacearum CMR15] Length = 241 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 28/128 (21%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G++A VF +GC +C +C + + +G ++ ++ D + + Sbjct: 39 GQLAAVVFI--AGCP-----------WRCHYCHNPHLQ-ERARGPDWS--EVLDFLGRRR 82 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 + V +GGEPL + +P LI A GF I + T G +DW+ Sbjct: 83 NLLDA----VVFSGGEPLSEPRLPQLIDAARALGFRIGLHTGGIYPARFAEVLPRLDWVG 138 Query: 133 VSPKAGCD 140 + K Sbjct: 139 LDIKTTAP 146 >gi|257064523|ref|YP_003144195.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Slackia heliotrinireducens DSM 20476] gi|256792176|gb|ACV22846.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Slackia heliotrinireducens DSM 20476] Length = 231 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 19/98 (19%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 VF GC+ +C FC +F + G ++ ++++ + Sbjct: 21 TVF--LGGCDF-----------RCPFC-HNFELVVGPLPVAMEDEEFFAFLDKRHGLLDG 66 Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +TGGEP L+ D+P I+ + GF + ++TNG Sbjct: 67 ----VAITGGEPCLRRDLPEFIKKIRDAGFPVKLDTNG 100 >gi|256827642|ref|YP_003151601.1| putative Fe-S oxidoreductase [Cryptobacterium curtum DSM 15641] gi|256583785|gb|ACU94919.1| predicted Fe-S oxidoreductase [Cryptobacterium curtum DSM 15641] Length = 422 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 18/96 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C + + + D+ +I++ + + Sbjct: 50 CNLKC--------EHC------YALSDAQHYDQLSTDEAKAMIDDL---AAFGAPVLLFS 92 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 GGEP ++ D+ L+Q G + + TNGT+ P+ Sbjct: 93 GGEPCVRPDLLELMQYAKAAGMRVVISTNGTLITPE 128 >gi|218233688|ref|YP_002365291.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus B4264] gi|228956924|ref|ZP_04118705.1| hypothetical protein bthur0005_4620 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229143233|ref|ZP_04271665.1| hypothetical protein bcere0012_4060 [Bacillus cereus BDRD-ST24] gi|229148845|ref|ZP_04277093.1| hypothetical protein bcere0011_4160 [Bacillus cereus m1550] gi|296501273|ref|YP_003662973.1| pyruvate formate-lyase activating enzyme [Bacillus thuringiensis BMB171] gi|218161645|gb|ACK61637.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus B4264] gi|228634639|gb|EEK91220.1| hypothetical protein bcere0011_4160 [Bacillus cereus m1550] gi|228640314|gb|EEK96712.1| hypothetical protein bcere0012_4060 [Bacillus cereus BDRD-ST24] gi|228802767|gb|EEM49603.1| hypothetical protein bthur0005_4620 [Bacillus thuringiensis serovar pakistani str. T13001] gi|296322325|gb|ADH05253.1| pyruvate formate-lyase activating enzyme [Bacillus thuringiensis BMB171] Length = 243 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKAAGIHTTIDSSG 107 >gi|24374440|ref|NP_718483.1| pyruvate formate lyase-activating enzyme 1 [Shewanella oneidensis MR-1] gi|24349016|gb|AAN55927.1|AE015730_4 pyruvate formate-lyase 1 activating enzyme [Shewanella oneidensis MR-1] Length = 246 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 60/195 (30%), Gaps = 44/195 (22%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F T+ G G RF GC +C++C DT Sbjct: 10 VESFGTVDGPG---------IRFIAFMQGC-----------LMRCQYCHNRDT----WDL 45 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117 G VD+L I + +GGE +LQ + L +A K G ++ Sbjct: 46 DGGKEVQVDELMSQIISYRPFLDASNGGVTASGGEAILQAEFVAELFKACKKEGIHTCLD 105 Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177 TNG + + D + + L Q+N + +LQ + Sbjct: 106 TNGFVRKYTPV----------IDELLDHTDLVLLDIKQMNDDKHIELTKVSNHRTLQFAE 155 Query: 178 GPFLEENTNLAISYC 192 + N I Y Sbjct: 156 Y-LAKRNQPTWIRYV 169 >gi|329945642|ref|ZP_08293375.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces sp. oral taxon 170 str. F0386] gi|328528645|gb|EGF55610.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces sp. oral taxon 170 str. F0386] Length = 291 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 62/184 (33%), Gaps = 33/184 (17%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF +GC L +C +C DT F+ G +L + Sbjct: 70 RMTVF--LNGCPL-----------RCLYCHNPDT-FLMKDGEP---VEASELLRRMRRYR 112 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130 L+GGE L+Q L+ K G ++T+G + E ID Sbjct: 113 GVFRASKGGITLSGGEVLMQPAFAGRLLSGAKKMGIHTCIDTSGFLGANASDEMLDNIDL 172 Query: 131 ICVSPKAGCDLKIKG--GQELKLVFPQVNVSPENYIGFDFERFSLQP--MDGPFLEENTN 186 + + K+G + K G+ L + I + RF L P D P N Sbjct: 173 VLLDVKSGDEETYKRVTGRSLAPTITFGDRLAAKGIEI-WARFVLVPDLTDDPENVHNVA 231 Query: 187 LAIS 190 I Sbjct: 232 RIIE 235 >gi|325068902|ref|ZP_08127575.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces oris K20] Length = 291 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 63/184 (34%), Gaps = 33/184 (17%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF +GC L +C++C DT F+ G +L + Sbjct: 70 RMTVF--LNGCPL-----------RCQYCHNPDT-FLMKDGEP---VEASELLRRMRRYR 112 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130 L+GGE L+Q L+ K G ++T+G + E ID Sbjct: 113 GVFRASKGGITLSGGEVLMQPAFAGKLLAGAKKMGIHTCIDTSGFLGANASDEMLDNIDL 172 Query: 131 ICVSPKAGCDLKIKG--GQELKLVFPQVNVSPENYIGFDFERFSLQP--MDGPFLEENTN 186 + + K+G + K G+ L + I + RF L P D P N Sbjct: 173 VLLDVKSGDEETYKKVTGRSLAPTITFGDRLAAKGIEI-WARFVLVPDLTDDPENVHNVA 231 Query: 187 LAIS 190 I Sbjct: 232 RIIE 235 >gi|308270120|emb|CBX26732.1| hypothetical protein N47_A07610 [uncultured Desulfobacterium sp.] Length = 338 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 25/115 (21%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 + CNL C C ++ + +++ + ++ + + + Sbjct: 21 LTKCNL-----------NCLHC---YINKEQHGKTTLSLETIKSWLDAF--SAKNKIANV 64 Query: 89 VLTGGEPLLQVDVPL-IQALNKRGFE-IAVETNG-------TIEPPQGIDWICVS 134 V GGEP L D+PL ++ G++ I V+TNG + P ID+I S Sbjct: 65 VFLGGEPTLHPDLPLAVKYAKNTGYKSITVDTNGYLFNRFLSKITPDEIDFISFS 119 >gi|326773240|ref|ZP_08232523.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces viscosus C505] gi|326636470|gb|EGE37373.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces viscosus C505] Length = 291 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 63/184 (34%), Gaps = 33/184 (17%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF +GC L +C++C DT F+ G +L + Sbjct: 70 RMTVF--LNGCPL-----------RCQYCHNPDT-FLMKDGEP---VEASELLRRMRRYR 112 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130 L+GGE L+Q L+ K G ++T+G + E ID Sbjct: 113 GVFRASKGGITLSGGEVLMQPAFAGRLLAGAKKMGIHTCIDTSGFLGANASDEMLDNIDL 172 Query: 131 ICVSPKAGCDLKIKG--GQELKLVFPQVNVSPENYIGFDFERFSLQP--MDGPFLEENTN 186 + + K+G + K G+ L + I + RF L P D P N Sbjct: 173 VLLDVKSGDEETYKKVTGRSLAPTITFGDRLAAKGIEI-WARFVLVPDLTDDPENVHNVA 231 Query: 187 LAIS 190 I Sbjct: 232 RIIE 235 >gi|171186113|ref|YP_001795032.1| radical SAM domain-containing protein [Thermoproteus neutrophilus V24Sta] gi|170935325|gb|ACB40586.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta] Length = 254 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 54/145 (37%), Gaps = 22/145 (15%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL G + T FV T G +++A+ + I E+ + Sbjct: 46 GCNLRCGMCWAWRN-------TSFVL---TAGQWMPPEEVAERLR--KIARERGYEQVRI 93 Query: 91 TGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG-- 146 +GGEPL+ L I L + VETNG + + P A + IKG Sbjct: 94 SGGEPLIAPRHALAVIDELRD--YVFVVETNGILIDRALARELAARPNAVVRVSIKGATP 151 Query: 147 QELKLVFPQVNVSPENYIGFDFERF 171 +E F ++ SP Y E Sbjct: 152 EE----FEKITRSPRAYFHRQLEAI 172 >gi|167745967|ref|ZP_02418094.1| hypothetical protein ANACAC_00662 [Anaerostipes caccae DSM 14662] gi|167654482|gb|EDR98611.1| hypothetical protein ANACAC_00662 [Anaerostipes caccae DSM 14662] Length = 308 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 50/155 (32%), Gaps = 50/155 (32%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------QCRFC-------- 50 F T G+G VF F GC L Q+ +C C Sbjct: 16 FSTHDGDGIRT---TVF--FKGCPLSCVWCQNPEGISLRRRPLYFENRCIHCKICAAESV 70 Query: 51 --------DTDFVGIQGTKGGRYNVD--------------QLADLIEEQWITGEKEGRY- 87 DT F+ I + + ++ + +++EE Sbjct: 71 SGGMKCRGDTMFMNIDAPEDWEHLIELCPSGALAMDSREYSVKEVMEEIRKDTVFYRHDG 130 Query: 88 -CVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119 L+GGEPL Q + L ++ K G A+ET+ Sbjct: 131 GVTLSGGEPLHQSEFALEILKQCKKEGIHTAIETS 165 >gi|319935770|ref|ZP_08010199.1| pyruvate formate-lyase activating enzyme [Coprobacillus sp. 29_1] gi|319809205|gb|EFW05654.1| pyruvate formate-lyase activating enzyme [Coprobacillus sp. 29_1] Length = 254 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 36/123 (29%) Query: 8 EIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F ++ G G R GC L +C+FC DT Sbjct: 12 ESFGSVDGPG---------VRYIYFLQGCPL-----------RCQFCHNPDT----WGSQ 47 Query: 61 KGGRYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117 K + L ++ + GEK G ++GGEPL+Q++ + L + K ++ Sbjct: 48 KYQEMTPEAALKQAMKYKSYWGEKGG--ITISGGEPLMQMEFILELFKLAKKENINTCID 105 Query: 118 TNG 120 T+G Sbjct: 106 TSG 108 >gi|228906251|ref|ZP_04070138.1| hypothetical protein bthur0013_4350 [Bacillus thuringiensis IBL 200] gi|228853407|gb|EEM98177.1| hypothetical protein bthur0013_4350 [Bacillus thuringiensis IBL 200] Length = 243 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSG 107 >gi|228937744|ref|ZP_04100377.1| hypothetical protein bthur0008_4220 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970623|ref|ZP_04131271.1| hypothetical protein bthur0003_4140 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977202|ref|ZP_04137601.1| hypothetical protein bthur0002_4190 [Bacillus thuringiensis Bt407] gi|228782511|gb|EEM30690.1| hypothetical protein bthur0002_4190 [Bacillus thuringiensis Bt407] gi|228789089|gb|EEM37020.1| hypothetical protein bthur0003_4140 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821896|gb|EEM67891.1| hypothetical protein bthur0008_4220 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938229|gb|AEA14125.1| pyruvate formate-lyase activating enzyme [Bacillus thuringiensis serovar chinensis CT-43] Length = 243 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSG 107 >gi|206968116|ref|ZP_03229072.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus AH1134] gi|228950999|ref|ZP_04113120.1| hypothetical protein bthur0006_4300 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068195|ref|ZP_04201502.1| hypothetical protein bcere0025_4110 [Bacillus cereus F65185] gi|229177033|ref|ZP_04304428.1| hypothetical protein bcere0005_4130 [Bacillus cereus 172560W] gi|229188712|ref|ZP_04315751.1| hypothetical protein bcere0002_4070 [Bacillus cereus ATCC 10876] gi|206737036|gb|EDZ54183.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus AH1134] gi|228594901|gb|EEK52681.1| hypothetical protein bcere0002_4070 [Bacillus cereus ATCC 10876] gi|228606508|gb|EEK63934.1| hypothetical protein bcere0005_4130 [Bacillus cereus 172560W] gi|228715009|gb|EEL66877.1| hypothetical protein bcere0025_4110 [Bacillus cereus F65185] gi|228808726|gb|EEM55224.1| hypothetical protein bthur0006_4300 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 243 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSG 107 >gi|228919371|ref|ZP_04082740.1| hypothetical protein bthur0011_3990 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840307|gb|EEM85579.1| hypothetical protein bthur0011_3990 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 243 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSG 107 >gi|83594329|ref|YP_428081.1| radical SAM family protein [Rhodospirillum rubrum ATCC 11170] gi|83577243|gb|ABC23794.1| Radical SAM [Rhodospirillum rubrum ATCC 11170] Length = 265 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 47/133 (35%), Gaps = 25/133 (18%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77 G VF SGC +C +C DT + G ++D+ + Sbjct: 41 GMRFVFF-LSGC-----------QFRCAYCHNPDT----WKLHNGRALDLDEAMAEV-SP 83 Query: 78 WITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKR-GFEIAVETNGTIEPPQGIDWICVS 134 + + ++GGEPL+Q D L+ L + G A++T G + W Sbjct: 84 YAGFLRIAGGVTVSGGEPLMQADFTGALLARLKDQLGLHTALDTQGFLHAGVSDRWF--D 141 Query: 135 PKAGCDLKIKGGQ 147 P L IK Sbjct: 142 PVDLVLLDIKHSD 154 >gi|75760247|ref|ZP_00740301.1| Pyruvate formate-lyase activating enzyme [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218895566|ref|YP_002443977.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus G9842] gi|228899192|ref|ZP_04063462.1| hypothetical protein bthur0014_4190 [Bacillus thuringiensis IBL 4222] gi|228963593|ref|ZP_04124746.1| hypothetical protein bthur0004_4720 [Bacillus thuringiensis serovar sotto str. T04001] gi|74492273|gb|EAO55435.1| Pyruvate formate-lyase activating enzyme [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218541045|gb|ACK93439.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus G9842] gi|228796111|gb|EEM43566.1| hypothetical protein bthur0004_4720 [Bacillus thuringiensis serovar sotto str. T04001] gi|228860461|gb|EEN04851.1| hypothetical protein bthur0014_4190 [Bacillus thuringiensis IBL 4222] Length = 243 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSG 107 >gi|229028300|ref|ZP_04184435.1| hypothetical protein bcere0028_4260 [Bacillus cereus AH1271] gi|228733024|gb|EEL83871.1| hypothetical protein bcere0028_4260 [Bacillus cereus AH1271] Length = 243 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSG 107 >gi|167624514|ref|YP_001674808.1| pyruvate formate lyase-activating enzyme 1 [Shewanella halifaxensis HAW-EB4] gi|167354536|gb|ABZ77149.1| pyruvate formate-lyase activating enzyme [Shewanella halifaxensis HAW-EB4] Length = 246 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 59/194 (30%), Gaps = 44/194 (22%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F T+ G G RF GC +C +C DT Sbjct: 11 ESFGTVDGPG---------IRFITFMQGC-----------LMRCLYCHNRDT----WDLH 46 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G VD L I E G +GGE +LQ D L +A K G ++T Sbjct: 47 GGKEMKVDDLMSQIISYRPFLEASGGGVTASGGEAILQADFVAELFKACKKEGIHTCLDT 106 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178 NG + I D + + L Q++ + + +LQ + Sbjct: 107 NGFVRKHTPI----------IDELLDNTDLVLLDIKQIDDAKHIVLTNVSNHRTLQFAEY 156 Query: 179 PFLEENTNLAISYC 192 + I Y Sbjct: 157 -LHKRGQKTWIRYV 169 >gi|159041911|ref|YP_001541163.1| radical SAM domain-containing protein [Caldivirga maquilingensis IC-167] gi|157920746|gb|ABW02173.1| Radical SAM domain protein [Caldivirga maquilingensis IC-167] Length = 384 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 7/91 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + S R + +C C ++ ++ +L+E+ E + + TG Sbjct: 36 PVVSWNITRRCNLKCLHC---YISAGDADENELTTEEAMNLVEQF---SELKVPLILFTG 89 Query: 93 GEPLLQ-VDVPLIQALNKRGFEIAVETNGTI 122 GEPL++ + L +G IA+ TNGT+ Sbjct: 90 GEPLMRGDLIKLAHYARDKGIRIALSTNGTL 120 >gi|189424840|ref|YP_001952017.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Geobacter lovleyi SZ] gi|189421099|gb|ACD95497.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Geobacter lovleyi SZ] Length = 193 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 30/140 (21%) Query: 10 FLTLQGEGGHAGRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 F T+ + G++A VFC GC +C +C + G G Sbjct: 10 FTTID----YPGKLAAVVFC--QGCP-----------WRCSYCHNQHLLDAGQSG-TVTW 51 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-- 124 ++ +E++ + V +GGEP +Q +P +QA+ + GF + T G Sbjct: 52 QEIIRFLEQRRSLLDA----VVFSGGEPTMQPTLPEALQAIRRMGFLTGLHTGGPYPQRL 107 Query: 125 ---PQGIDWICVSPKAGCDL 141 +DW+ + KA L Sbjct: 108 AACLSQLDWVGMDLKAPFKL 127 >gi|309775961|ref|ZP_07670953.1| pyruvate-formate lyase-activating enzyme [Erysipelotrichaceae bacterium 3_1_53] gi|308916243|gb|EFP61991.1| pyruvate-formate lyase-activating enzyme [Erysipelotrichaceae bacterium 3_1_53] Length = 378 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 18/101 (17%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F GCN +C FC + + + +E++ + Sbjct: 169 TIF--TGGCNF-----------RCPFCQNSDLVFLPENMPELQEEDVLRFLEKRKGILDG 215 Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 ++GGEPLL ++ ++ + G+ + ++TNG+ Sbjct: 216 ----VCISGGEPLLNPELAGFLRKIKALGYAVKLDTNGSSP 252 >gi|307727418|ref|YP_003910631.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. CCGE1003] gi|307587943|gb|ADN61340.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. CCGE1003] Length = 411 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 17/112 (15%) Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGR-YNVDQ 69 + QGE AG LW E R C FC + + T R + +Q Sbjct: 10 SAQGEAAPAGVPP--------PLWLLAELTYRCPLHCAFC---YNPVDYTAHNRELSTEQ 58 Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 ++ E G + + +GGEPL++ D+ L++ GF + T+G Sbjct: 59 WLRVLREARALGAAQLGF---SGGEPLMRDDLEVLVREARALGFYTNLITSG 107 >gi|229159596|ref|ZP_04287610.1| hypothetical protein bcere0009_4020 [Bacillus cereus R309803] gi|228623898|gb|EEK80710.1| hypothetical protein bcere0009_4020 [Bacillus cereus R309803] Length = 243 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSG 107 >gi|218780423|ref|YP_002431741.1| glycyl-radical enzyme activating protein family [Desulfatibacillum alkenivorans AK-01] gi|218761807|gb|ACL04273.1| Pyruvate formate lyase activating enzyme [Desulfatibacillum alkenivorans AK-01] Length = 297 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 GG ++ + L + I G L+GGEPLL D + + G I +ET Sbjct: 100 GGDWDAESLLEEIAADRDFFLDSGGGVTLSGGEPLLHGDFLLEFLSLAKSEGIHINLETC 159 Query: 120 G 120 G Sbjct: 160 G 160 >gi|159904704|ref|YP_001548366.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanococcus maripaludis C6] gi|159886197|gb|ABX01134.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanococcus maripaludis C6] Length = 242 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 30/125 (24%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF SGCN+ G + + TK +++ + ++ + Sbjct: 28 VF--LSGCNMKCGYCHNYETI-------------TTKISEMTAEEVFNGMDLMFAES--- 69 Query: 85 GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSP 135 V++GGEP LQ + + L + ++ F + ++TNGT + ID+I + Sbjct: 70 ---LVISGGEPTLQPEAVLELAKIAKEKEFPVKLDTNGTNPDLVEKLVLNKLIDYIAIDV 126 Query: 136 KAGCD 140 KAG + Sbjct: 127 KAGFE 131 >gi|322807528|emb|CBZ05103.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum H04402 065] Length = 232 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 23/101 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G + D++ + Sbjct: 22 VF--FQGC-----------QLRCVYCHNPDT----WDFNAGIEISSDEVLKKVLRYKPY- 63 Query: 82 EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 K+ +GGEPL+Q + +++ +G A++T+G Sbjct: 64 FKQVGGITCSGGEPLMQPEFLLEILKKCKNQGIHTALDTSG 104 >gi|255324305|ref|ZP_05365426.1| pyruvate formate-lyase 1-activating enzyme [Corynebacterium tuberculostearicum SK141] gi|255298635|gb|EET77931.1| pyruvate formate-lyase 1-activating enzyme [Corynebacterium tuberculostearicum SK141] Length = 289 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 28/128 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ +F SGC L +C++C DT + G V+ + I+ Sbjct: 67 RMTMFM--SGCPL-----------RCQYCHNPDT----WEMKTGTLERVEDVVKRIKRYK 109 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTI------EPPQGIDW 130 G ++GGEPL Q+ +++ ++ G ++T G + E ID Sbjct: 110 PIFNASGGGLTISGGEPLFQLSFTRRVLKEVHDAGIHTTIDTAGYLGARLRDEDLDNIDL 169 Query: 131 ICVSPKAG 138 + + K+G Sbjct: 170 VLLDVKSG 177 >gi|311741220|ref|ZP_07715044.1| pyruvate formate-lyase activating enzyme [Corynebacterium pseudogenitalium ATCC 33035] gi|311303390|gb|EFQ79469.1| pyruvate formate-lyase activating enzyme [Corynebacterium pseudogenitalium ATCC 33035] Length = 289 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 28/128 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ +F SGC L +C++C DT + G V+ + I+ Sbjct: 67 RMTMFM--SGCPL-----------RCQYCHNPDT----WEMKTGTLERVEDVVKRIKRYK 109 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTI------EPPQGIDW 130 G ++GGEPL Q+ +++ ++ G ++T G + E ID Sbjct: 110 PIFNASGGGLTISGGEPLFQLSFTRRVLKEVHDAGIHTTIDTAGYLGARLRDEDLDNIDL 169 Query: 131 ICVSPKAG 138 + + K+G Sbjct: 170 VLLDVKSG 177 >gi|225387330|ref|ZP_03757094.1| hypothetical protein CLOSTASPAR_01083 [Clostridium asparagiforme DSM 15981] gi|225046579|gb|EEG56825.1| hypothetical protein CLOSTASPAR_01083 [Clostridium asparagiforme DSM 15981] Length = 232 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 19/99 (19%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 VF GCN +C FC + + GT Y ++ D + ++ E Sbjct: 20 ATVF--TGGCNF-----------RCPFC-HNSELLPGTVEAEYETGEVLDFLRKRKGILE 65 Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +TGGEP LQ D+ I+++ + G + ++TNG Sbjct: 66 G----VCITGGEPTLQPDLEDFIRSVRELGLLVKLDTNG 100 >gi|170758246|ref|YP_001788534.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A3 str. Loch Maree] gi|169405235|gb|ACA53646.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A3 str. Loch Maree] Length = 232 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 23/101 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G + D++ + Sbjct: 22 VF--FQGC-----------QLRCVYCHNPDT----WDFNAGIEISSDEVLKKVLRYKPY- 63 Query: 82 EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 K+ +GGEPL+Q + +++ +G A++T+G Sbjct: 64 FKQVGGITCSGGEPLMQPEFLLEILKKCKSQGIHTALDTSG 104 >gi|299136379|ref|ZP_07029563.1| molybdenum cofactor biosynthesis protein A [Acidobacterium sp. MP5ACTX8] gi|298602503|gb|EFI58657.1| molybdenum cofactor biosynthesis protein A [Acidobacterium sp. MP5ACTX8] Length = 349 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 21/109 (19%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QV 99 DR + +C +C T G +G +Y+ +AD + LTGGEPLL Q Sbjct: 38 DRCNYRCVYCRT------GEEGAQYSELPIADYARILRVFVSLGIEKIRLTGGEPLLRQG 91 Query: 100 DVPLIQ-------ALNKRGFEIAVETNGTIEPP-------QGIDWICVS 134 + LI+ A + +IA+ TNG + P G+ I VS Sbjct: 92 LLDLIRETAQLRPAFSDAPLDIALTTNGHLLAPLARPLREAGLSRITVS 140 >gi|266619565|ref|ZP_06112500.1| pyruvate formate-lyase 1-activating enzyme [Clostridium hathewayi DSM 13479] gi|288868850|gb|EFD01149.1| pyruvate formate-lyase 1-activating enzyme [Clostridium hathewayi DSM 13479] Length = 256 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 27/118 (22%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64 E F T+ G G VF GC + +C++C DT G Sbjct: 10 ESFGTVDGPGIRM---VVF--TKGCPM-----------RCQYCHNPDT----WSLHGGTA 49 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 V ++ D E G +TGGEPLLQ++ L + +R ++T+G Sbjct: 50 MTVSEILDQYEASRP--FYRGGGITVTGGEPLLQMEFVTELFEEACRRDIHTCLDTSG 105 >gi|323496041|ref|ZP_08101104.1| pyruvate formate lyase-activating enzyme 1 [Vibrio sinaloensis DSM 21326] gi|323318932|gb|EGA71880.1| pyruvate formate lyase-activating enzyme 1 [Vibrio sinaloensis DSM 21326] Length = 246 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 53/163 (32%), Gaps = 30/163 (18%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G V+++ + + Sbjct: 21 IRFIVFMQGC-----------LMRCQYCHNRDT----WDTHGGKEVTVEEIINDAKSYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQG-IDWICVSPK 136 G +GGE +LQ + +A G ++TNG I ID + Sbjct: 66 FMNASGGGVTCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYIRKHTDVIDEVL---- 121 Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 DL + + +K + N DF R LQ + Sbjct: 122 EATDLVMLDLKHMKDEIHHDFIGVSNKRTLDFAR-YLQKLGQK 163 >gi|315608967|ref|ZP_07883939.1| pyruvate formate-lyase activating enzyme [Prevotella buccae ATCC 33574] gi|315249347|gb|EFU29364.1| pyruvate formate-lyase activating enzyme [Prevotella buccae ATCC 33574] Length = 249 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 34/121 (28%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F ++ G G RF GC + +C+FC D+ G+ Sbjct: 16 ETFGSVDGPG---------IRFLIFLQGCPM-----------RCQFCHNPDSWQTGV--- 52 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 G + D+L D E + + ++GGE L+Q+D L + ++RG ++T Sbjct: 53 -GEKMTADELLDR-AEHYRSYWGREGGITVSGGEALMQIDFLTELFRKAHERGINTCLDT 110 Query: 119 N 119 + Sbjct: 111 S 111 >gi|73668980|ref|YP_304995.1| heme biosynthesis protein [Methanosarcina barkeri str. Fusaro] gi|72396142|gb|AAZ70415.1| heme biosynthesis protein [Methanosarcina barkeri str. Fusaro] Length = 349 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 17/99 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 +GCNL CR G D+ I+E G+ Sbjct: 16 TAGCNLNC--------VHCRG-----ASTSSVPAGELTTDEAKHFIDEVASIGK---PIL 59 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 +L+GGEPL + DV + + G + + TNGT+ P+ Sbjct: 60 ILSGGEPLTRPDVFEIARYGTDAGLRVVLATNGTLLTPE 98 >gi|302534965|ref|ZP_07287307.1| pyruvate formate-lyase 1-activating enzyme [Streptomyces sp. C] gi|302443860|gb|EFL15676.1| pyruvate formate-lyase 1-activating enzyme [Streptomyces sp. C] Length = 289 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 21/98 (21%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 +GC L C +C DT + G R + D + + G Sbjct: 72 LAGCPLT-----------CLYCHNPDTMRMR----NGRRTSADAVIAEARKYTRFISASG 116 Query: 86 RYCVLTGGEPLLQVDV--PLIQALN-KRGFEIAVETNG 120 L+GGEPLLQ L+ L G A++T+G Sbjct: 117 GGATLSGGEPLLQPVFAGELLHRLKSDLGLHTALDTSG 154 >gi|289423463|ref|ZP_06425265.1| pyruvate formate-lyase 1-activating enzyme [Peptostreptococcus anaerobius 653-L] gi|289156097|gb|EFD04760.1| pyruvate formate-lyase 1-activating enzyme [Peptostreptococcus anaerobius 653-L] Length = 243 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 49/137 (35%), Gaps = 35/137 (25%) Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---D 51 M I E F T+ G G RF GC L +CRFC D Sbjct: 1 MTKGRIHSYETFGTVDGPG---------IRFVLFTQGCPL-----------RCRFCHNRD 40 Query: 52 TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNK 109 T + G D++ D + E G ++GGE LQ D + + K Sbjct: 41 T----WETGIGTEMTPDEVIDEYMKYKTYYETSGGGITVSGGEASLQADFVTEVFRLAKK 96 Query: 110 RGFEIAVETNGTIEPPQ 126 G ++T+G +E + Sbjct: 97 NGVHTCLDTSGFVEIDK 113 >gi|288870623|ref|ZP_06114741.2| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium hathewayi DSM 13479] gi|288866496|gb|EFC98794.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium hathewayi DSM 13479] Length = 260 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 28/125 (22%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GCN +C FC ++ +G + D L ++ + Sbjct: 49 ATIF--LGGCNF-----------RCPFCHNSGLLGNDAEEA--MTEDSLFTFLKRRTSVL 93 Query: 82 EKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG-------IDWICV 133 E +TGGEP L D+ I+ + + G+ I ++TNG +D+I + Sbjct: 94 EG----VCITGGEPTLSDDLEEFIRRIRQMGYLIKLDTNGYRPAVLKDLAGKGLLDYIAM 149 Query: 134 SPKAG 138 KAG Sbjct: 150 DIKAG 154 >gi|325969859|ref|YP_004246050.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Spirochaeta sp. Buddy] gi|324025097|gb|ADY11856.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Spirochaeta sp. Buddy] Length = 234 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 27/124 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 FC GCN +R + + C TD+ + + Sbjct: 22 FFC--QGCNYDCFYCHNRALIEPKSCITDY-----------------QEAQTFLQQRKGF 62 Query: 85 GRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEPP-------QGIDWICVSPK 136 + V++GGEP L + ++ + GF + ++TNG+ + ++ V K Sbjct: 63 IQAVVISGGEPSLQHDLMEFVEFIRNLGFAVKLDTNGSRPQVVSKLLEHDLLSYVAVDVK 122 Query: 137 AGCD 140 A C+ Sbjct: 123 APCE 126 >gi|117626444|ref|YP_859767.1| putative pyruvate-formate lyase-activating enzyme [Escherichia coli APEC O1] gi|115515568|gb|ABJ03643.1| putative pyruvate-formate lyase-activating enzyme [Escherichia coli APEC O1] Length = 305 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 KG R +V + +E++ + G L+GGEPL Q + L++A +G+ A+ET Sbjct: 107 KGKRMSVTAVMRELEKEENLYRRSGGGITLSGGEPLAQPEFARELLKASKAKGWHTAIET 166 Query: 119 NG 120 +G Sbjct: 167 SG 168 >gi|158319189|ref|YP_001511696.1| radical SAM domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158139388|gb|ABW17700.1| Radical SAM domain protein [Alkaliphilus oremlandii OhILAs] Length = 292 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C FC +T ++ ++EE + + Sbjct: 15 CNL-----------ACSFCPETKRA------AEFMKIESFHKILEEIKPFADYIYFHVK- 56 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL + + +++GF++ + TNGT+ Sbjct: 57 --GEPLLHPAIDQFLDLSHEKGFQVNITTNGTL 87 >gi|134100858|ref|YP_001106519.1| radical SAM family protein [Saccharopolyspora erythraea NRRL 2338] gi|291003527|ref|ZP_06561500.1| radical SAM family protein [Saccharopolyspora erythraea NRRL 2338] gi|133913481|emb|CAM03594.1| radical SAM [Saccharopolyspora erythraea NRRL 2338] Length = 341 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 20/117 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C G R V+Q +EE + Sbjct: 38 CNLAC--------AGCG----KIQHPAGVLKQRMPVEQALAAVEECG------APVVSIA 79 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147 GGEPL+ ++ L+ L +R + + TN + P+ ID + SP + I G + Sbjct: 80 GGEPLMHPEIDVLVAELVRRKKFVYLCTN-ALLMPRKIDKLRPSPYFSWAVHIDGLE 135 >gi|297569532|ref|YP_003690876.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfurivibrio alkaliphilus AHT2] gi|296925447|gb|ADH86257.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfurivibrio alkaliphilus AHT2] Length = 203 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 55/161 (34%), Gaps = 36/161 (22%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG--RYNVDQLADLIEE 76 GRVA +F GCN +C +C + G Y +++ + Sbjct: 16 GRVAAVIF--TQGCNF-----------RCPWCHNAELIPAAAPAGADLYAPEEILARLAA 62 Query: 77 QWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP 135 + V++GGEP LQ D + + + K G + V++NG+ Sbjct: 63 RRNKLGGA----VISGGEPTLQPDLLDFCREIKKLGLAVKVDSNGSRPEILA-------- 110 Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176 K+ + + + + P Y + L+ + Sbjct: 111 ------KLLAAKVVDFLAMDIKAPPAKYEQLVSTKVDLEAI 145 >gi|261207618|ref|ZP_05922303.1| formate acetyltransferase activating enzyme [Enterococcus faecium TC 6] gi|289565130|ref|ZP_06445583.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium D344SRF] gi|294614807|ref|ZP_06694702.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1636] gi|294617486|ref|ZP_06697117.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1679] gi|260078001|gb|EEW65707.1| formate acetyltransferase activating enzyme [Enterococcus faecium TC 6] gi|289163137|gb|EFD10984.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium D344SRF] gi|291592269|gb|EFF23883.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1636] gi|291596226|gb|EFF27488.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1679] Length = 253 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 28/119 (23%) Query: 8 EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F ++ G G VF GC +C+FC DT +G G Sbjct: 13 ETFGSVDGPGLRFV----VFM--QGC-----------RMRCQFCHNPDTWNIG----GGK 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 Y D+L D E +G ++GGEPLLQ+D + L + +R ++T G Sbjct: 52 EYTADELLDKAERFRPYWGNKGG-ITVSGGEPLLQIDFLIELFKKAKERKMHTTLDTCG 109 >gi|312623314|ref|YP_004024927.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Caldicellulosiruptor kronotskyensis 2002] gi|312203781|gb|ADQ47108.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Caldicellulosiruptor kronotskyensis 2002] Length = 231 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 28/152 (18%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 F GCN C FC + G++ D + E + Sbjct: 23 FGGCNF-----------SCPFC---YNSELVNFKGKFMDDSI---FFEYLDKRKGIVDAV 65 Query: 89 VLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGC 139 +TGGEP L I+ + ++ + ++TNG+ +D++ + KA Sbjct: 66 CITGGEPTLNEEYLTEFIKKIKQKNLLVKLDTNGSKPEVLQRLLDAGLLDYVAMDVKAPL 125 Query: 140 D--LKIKGGQELKLVFPQVNVSPENYIGFDFE 169 + +I G ++ + + + + I ++F Sbjct: 126 EKYPQITGFSDVDKIIRSIEILKNSNIDYEFR 157 >gi|283856503|ref|YP_163304.2| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp. mobilis ZM4] gi|283775507|gb|AAV90193.2| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp. mobilis ZM4] Length = 263 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 30/133 (22%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 RF +GC + +C++C LA+++EE + Sbjct: 41 VRFVLFLAGC-----------ALRCQYC----HNPDSWFLKNGRAVTLAEMMEEVASYAD 85 Query: 83 KEGRY---CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI------EPPQGIDWI 131 R ++GGEPL+Q + L++A G A++T G + D + Sbjct: 86 FLKRAGGGITISGGEPLVQPEFTGALLKAAKYLGLHTAIDTAGFLGAQADDALLSNTDLV 145 Query: 132 CVSPKAGCDLKIK 144 + KA D + K Sbjct: 146 LLDIKAFNDKRYK 158 >gi|260753867|ref|YP_003226760.1| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553230|gb|ACV76176.1| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 270 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 30/133 (22%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 RF +GC + +C++C LA+++EE + Sbjct: 48 VRFVLFLAGC-----------ALRCQYC----HNPDSWFLKNGRAVTLAEMMEEVASYAD 92 Query: 83 KEGRY---CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI------EPPQGIDWI 131 R ++GGEPL+Q + L++A G A++T G + D + Sbjct: 93 FLKRAGGGITISGGEPLVQPEFTGALLKAAKYLGLHTAIDTAGFLGAQADDALLSNTDLV 152 Query: 132 CVSPKAGCDLKIK 144 + KA D + K Sbjct: 153 LLDIKAFNDKRYK 165 >gi|182701939|ref|ZP_02618322.2| radical SAM domain protein [Clostridium botulinum Bf] gi|237797038|ref|YP_002864590.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657] gi|182673213|gb|EDT85174.1| radical SAM domain protein [Clostridium botulinum Bf] gi|229263329|gb|ACQ54362.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657] Length = 278 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 63/175 (36%), Gaps = 38/175 (21%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDT--------------DF 54 F ++ G G A+F F GCN + + C+ C T D Sbjct: 12 FSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDS 66 Query: 55 VGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 V K G R + ++I+E T ++GGE LQ Sbjct: 67 VKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKEILKTKPFISG-ITVSGGECTLQK 125 Query: 100 D--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152 D + L + + G I ++TNG+++ + + A D+K +E K++ Sbjct: 126 DFLIDLFEKIKLLGLTIFIDTNGSLDFSKNPKLTELMDMAMIDVKSFDNEEHKML 180 >gi|241762442|ref|ZP_04760520.1| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373036|gb|EER62694.1| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 270 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 30/133 (22%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 RF +GC + +C++C LA+++EE + Sbjct: 48 VRFVLFLAGC-----------ALRCQYC----HNPDSWFLKNGRAVTLAEMMEEVASYAD 92 Query: 83 KEGRY---CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI------EPPQGIDWI 131 R ++GGEPL+Q + L++A G A++T G + D + Sbjct: 93 FLKRAGGGITISGGEPLVQPEFTGALLKAAKYLGLHTAIDTAGFLGAQADDALLSNTDLV 152 Query: 132 CVSPKAGCDLKIK 144 + KA D + K Sbjct: 153 LLDIKAFNDKRYK 165 >gi|313669389|ref|YP_004049816.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Sulfuricurvum kujiense DSM 16994] gi|313156586|gb|ADR35263.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Sulfuricurvum kujiense DSM 16994] Length = 227 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 32/141 (22%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 A+F F+GCNL +C +C + GR +V+Q ++ ++ E Sbjct: 26 AAIFW-FAGCNL-----------RCLYC---YNPDIVLGEGRISVEQALSILVKRVGFLE 70 Query: 83 KEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPP-------QGIDWICVS 134 VL+GGE L +P ++ G++I ++TNG +D++ + Sbjct: 71 G----VVLSGGECTLYSDLIPFCHSIKNMGYKIKIDTNGMRPDVIRQLLEANLLDYVALD 126 Query: 135 PKAGCDLKIK----GGQELKL 151 KA D K+K GG E + Sbjct: 127 YKAP-DSKMKDICGGGSEKRF 146 >gi|268678692|ref|YP_003303123.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Sulfurospirillum deleyianum DSM 6946] gi|268616723|gb|ACZ11088.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Sulfurospirillum deleyianum DSM 6946] Length = 231 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 37/154 (24%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 F+ CN+ C +C + G ++ + +E + E Sbjct: 32 FAKCNM-----------ACPYC---YNPQIVRGKGEISLASALEFLESRKDRLEG----V 73 Query: 89 VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGCD 140 VL+GGE L + +A+ + G++I ++TNGT +D+I + KA Sbjct: 74 VLSGGECTLYPHLESFCEAIKRLGYKIKIDTNGTNPALLKRLIERTLVDYIALDYKAP-- 131 Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174 K + ++ P + + + +Q Sbjct: 132 ---------KKHYTRITHHPHFEVFEESLHYLIQ 156 >gi|146296194|ref|YP_001179965.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409770|gb|ABP66774.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 231 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 28/152 (18%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 F GCN C FC + G + D + E + Sbjct: 23 FGGCNF-----------SCPFC---YNSQLVNFKGNFMDDSI---FFEYLDKRKGIVDAV 65 Query: 89 VLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGC 139 +TGGEP L I+ + +R + ++TNG+ +D++ + KA Sbjct: 66 CITGGEPTLNEEYLTEFIKKIKQRDLLVKLDTNGSRPEVLQRLLDAGLLDYVAMDVKAPL 125 Query: 140 D--LKIKGGQELKLVFPQVNVSPENYIGFDFE 169 + +I G E+ + + + + I ++F Sbjct: 126 EKYPQITGFSEVDKIRRSIEILKNSNIDYEFR 157 >gi|126649567|ref|ZP_01721808.1| hypothetical protein BB14905_06503 [Bacillus sp. B14905] gi|126593892|gb|EAZ87815.1| hypothetical protein BB14905_06503 [Bacillus sp. B14905] Length = 291 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C FC T+ G V+Q +++E + + Sbjct: 15 CNL-----------ACSFCPPTERA------KGLIKVEQFNKILDEIRPHTKYIYLHVK- 56 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL + L+ A + +GF++ + TNGT+ Sbjct: 57 --GEPLLHPRIDQLLDAAHAKGFKVNITTNGTL 87 >gi|296136124|ref|YP_003643366.1| molybdenum cofactor biosynthesis protein A [Thiomonas intermedia K12] gi|295796246|gb|ADG31036.1| molybdenum cofactor biosynthesis protein A [Thiomonas intermedia K12] Length = 378 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 15/131 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C + + + + ++ ++ + R LTGGEPLL+ Sbjct: 48 DRCNFRCTYCMPKEIFDKHYEFLSHADLLSFEEITRAAQVFMALGVRKIRLTGGEPLLRK 107 Query: 100 DVP-LIQALNK----RGF--EIAVETNGTIEP-------PQGIDWICVSPKAGCDLKIKG 145 ++ L++ L+ G E+ + TNG+I G+D + VS A D + Sbjct: 108 NLERLVEMLHSLRTPEGLAPELTLTTNGSILARKATLLKEAGLDRVTVSLDALDDAAFRQ 167 Query: 146 GQELKLVFPQV 156 ++ +V Sbjct: 168 MNDVDFPVAEV 178 >gi|148381517|ref|YP_001256058.1| radical SAM domain protein [Clostridium botulinum A str. ATCC 3502] gi|148291001|emb|CAL85138.1| putative dehydratase/lyase activating enzyme [Clostridium botulinum A str. ATCC 3502] Length = 279 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 62/175 (35%), Gaps = 38/175 (21%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDT--------------DF 54 F ++ G G A+F F GCN + + C+ C T D Sbjct: 13 FSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDS 67 Query: 55 VGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 V K G R + ++I+E T ++GGE LQ Sbjct: 68 VKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKEILKTKPFISG-ITVSGGECTLQR 126 Query: 100 D--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152 D + L + + G I V+TNG+++ + + A D+K E K++ Sbjct: 127 DFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMLDVKSFDSDEHKML 181 >gi|153932810|ref|YP_001385892.1| radical SAM domain-containing protein [Clostridium botulinum A str. ATCC 19397] gi|153937401|ref|YP_001389299.1| radical SAM domain-containing protein [Clostridium botulinum A str. Hall] gi|152928854|gb|ABS34354.1| radical SAM domain protein [Clostridium botulinum A str. ATCC 19397] gi|152933315|gb|ABS38814.1| radical SAM domain protein [Clostridium botulinum A str. Hall] Length = 278 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 62/175 (35%), Gaps = 38/175 (21%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDT--------------DF 54 F ++ G G A+F F GCN + + C+ C T D Sbjct: 12 FSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDS 66 Query: 55 VGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 V K G R + ++I+E T ++GGE LQ Sbjct: 67 VKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKEILKTKPFISG-ITVSGGECTLQR 125 Query: 100 D--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152 D + L + + G I V+TNG+++ + + A D+K E K++ Sbjct: 126 DFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMLDVKSFDSDEHKML 180 >gi|253582696|ref|ZP_04859917.1| pyruvate-formate lyase-activating enzyme [Fusobacterium varium ATCC 27725] gi|251835566|gb|EES64106.1| pyruvate-formate lyase-activating enzyme [Fusobacterium varium ATCC 27725] Length = 243 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 36/192 (18%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 E F T+ G G RF GC L +C+FC + Sbjct: 11 ESFGTVDGPG---------IRFVLFLQGCPL-----------RCKFCHNPDTWNISDEKI 50 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121 R + + ++ ++ + +TGGEP LQ D + L + + G V+T+G Sbjct: 51 RERAVETFEKVK-KYKGYFGKKGGLTVTGGEPFLQADFILELFKLCKEDGINTVVDTSGY 109 Query: 122 I------EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175 I E + D + + KA + K EL V + + Y+ +R ++ Sbjct: 110 IFNEKVKEVLEYTDLVLLDIKAIDEKVYK---ELTGVELENTLKFAQYLKEKGKRVWIRH 166 Query: 176 MDGPFLEENTNL 187 + P + +N L Sbjct: 167 VIVPGITDNDEL 178 >gi|86607742|ref|YP_476504.1| pyruvate formate-lyase activating enzyme [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556284|gb|ABD01241.1| pyruvate formate-lyase activating enzyme [Synechococcus sp. JA-2-3B'a(2-13)] Length = 249 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 39/120 (32%), Gaps = 32/120 (26%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C +C D G V+ L I+ Sbjct: 29 IRFVIFTQGCPL-----------RCLYCHNPD----CRDPQAGQLVTVESLIAEIQRYKN 73 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWI 131 G TGGEPL+Q + + ++ G A++T+G + D + Sbjct: 74 YLRGGG--VTATGGEPLMQPTFVAEIFRRCHELGLHTALDTSGYGQLEAAKPVLEHTDLV 131 >gi|302866329|ref|YP_003834966.1| radical SAM domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302569188|gb|ADL45390.1| Radical SAM domain protein [Micromonospora aurantiaca ATCC 27029] Length = 303 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 19/93 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 + CNL +C FC G + + DL+ G Sbjct: 28 TARCNL-----------RCTFC----WGPDHDIRDGLDTAEWKDLLSRFRAGGTSA---V 69 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 V TGGEPLL+ D+ L++ ++ GF + + TNG Sbjct: 70 VFTGGEPLLRRDIGGLLRHASEEGFRVTLSTNG 102 >gi|303290949|ref|XP_003064761.1| predicted protein [Micromonas pusilla CCMP1545] gi|226453787|gb|EEH51095.1| predicted protein [Micromonas pusilla CCMP1545] Length = 278 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 40/126 (31%), Gaps = 35/126 (27%) Query: 21 GRVA-VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEE 76 G A VF GC +C FC D+ G Q+ I+ Sbjct: 39 GIRAIVF--LQGC-----------EKRCVFCCNPDS----WSARSGASMTAKQVFTRIQR 81 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDV---------PLIQALNKRGFEIAVET--NGTIEPP 125 G L+GGEPLLQ L + RG A++T GT Sbjct: 82 NARYYAASGGGITLSGGEPLLQARRRRRRPAFAAELCDLVRARGLTAAIDTAAGGT---S 138 Query: 126 QGIDWI 131 G D + Sbjct: 139 AGWDVV 144 >gi|116750344|ref|YP_847031.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116699408|gb|ABK18596.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB] Length = 324 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 63/164 (38%), Gaps = 31/164 (18%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R +A+C FCD +L D +E + + LTGGEPLL+ D+ Sbjct: 36 RCNARCNFCD---------YWKEKPTGELGDYVE---VVRKLAPLSVSLTGGEPLLRADL 83 Query: 102 P-LIQALNKR-GF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNV 158 P LI +L + GF I++ TNG++ + G L G E+ + ++ Sbjct: 84 PELIASLRRSFGFLFISLITNGSLLTREN----------GVALWEAGLDEMSISLDYLDE 133 Query: 159 SPEN---YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199 + G +L P G NL + + +R Sbjct: 134 RHDEGRGIHGLAGHILALAPRLGS---AGVNLCFNVVLKRGNYR 174 >gi|331680073|ref|ZP_08380735.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme) (Formate-C-acetyltransferase-activating enzyme 2) [Escherichia coli H591] gi|331072399|gb|EGI43732.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme) (Formate-C-acetyltransferase-activating enzyme 2) [Escherichia coli H591] Length = 315 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 66/177 (37%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 47 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 101 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 102 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 161 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + + DLKI + +K+ P+V Sbjct: 162 LQRLRLWGVSCAIETAGDAPASKLLPLVKLCDEVLFDLKIMDATQARDVVKMNLPRV 218 >gi|298530196|ref|ZP_07017598.1| Radical SAM domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509570|gb|EFI33474.1| Radical SAM domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 348 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 20/113 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + +++ +++ G + R VL Sbjct: 37 CNL-----------RCIYC---YAESGAPLENELRFEEITAAVDQAVELGAR--RIIVLG 80 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWIC---VSPKAGCD 140 GGEPL +P++Q + KRG I + TNGT+ + + VSP + Sbjct: 81 GGEPLAHPQILPVLQHIYKRGAAIDLFTNGTLITAETAEIFAELGVSPVIKMN 133 >gi|182414976|ref|YP_001820042.1| radical SAM domain-containing protein [Opitutus terrae PB90-1] gi|177842190|gb|ACB76442.1| Radical SAM domain protein [Opitutus terrae PB90-1] Length = 351 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 10/91 (10%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A I+ +G R + D + + +L Sbjct: 17 CNLRCAMCGQWSPAG---------YIRSGRGRRGHPLTAEDWMRLADEAAAHGIKSILLR 67 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 GGEP + + L++ L+ G I+++TNGT Sbjct: 68 GGEPFMLPGIQRLLEHLHDLGMFISIDTNGT 98 >gi|229077802|ref|ZP_04210429.1| hypothetical protein bcere0023_5030 [Bacillus cereus Rock4-2] gi|228705530|gb|EEL57889.1| hypothetical protein bcere0023_5030 [Bacillus cereus Rock4-2] Length = 243 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDLTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSG 107 >gi|302873840|ref|YP_003842473.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|307689915|ref|ZP_07632361.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|302576697|gb|ADL50709.1| Radical SAM domain protein [Clostridium cellulovorans 743B] Length = 467 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 18/156 (11%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQ 105 C +C + + D I+ + + +GGEPL+ D + L++ Sbjct: 146 CIYC------CNSSGSRIEDELSFNDWIKVIDEAADLGVETILFSGGEPLMYPDFIKLVK 199 Query: 106 ALNKRGFEIAVETNGTIEPPQ--------GIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 G V TNGT+ + GID++ +S A + K P+V Sbjct: 200 RTKDNGIYPIVSTNGTLISEETAKQLSEAGIDFVHLSMSAANEELYDSIIGYKGNLPKVK 259 Query: 158 VSPENYIGFDFE---RFSLQPMDGPFLEENTNLAIS 190 + + + + L P++ +EE + I Sbjct: 260 AAIKALKDNNIYIRLKVVLMPVNIKHIEELLDFCIE 295 >gi|237751662|ref|ZP_04582142.1| predicted protein [Helicobacter bilis ATCC 43879] gi|229373028|gb|EEO23419.1| predicted protein [Helicobacter bilis ATCC 43879] Length = 437 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 8/85 (9%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104 +C+ C F+ + + +++ + + + I ++GGEPLL ++ L+ Sbjct: 124 RCKHC---FINAGRVEKQQIDIENILAKVRDITIINGYTS--VTISGGEPLLHKNIFSLL 178 Query: 105 QALNKRGFEIAVETNGTIEPPQGID 129 + L RG ++++ TNG + ID Sbjct: 179 EGL--RGHKVSLFTNGILINESIID 201 >gi|167748466|ref|ZP_02420593.1| hypothetical protein ANACAC_03210 [Anaerostipes caccae DSM 14662] gi|167652458|gb|EDR96587.1| hypothetical protein ANACAC_03210 [Anaerostipes caccae DSM 14662] Length = 230 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 20/102 (19%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 VF GCN + C FC + + + + + G D LA L + + I Sbjct: 21 TVF--TGGCNFF-----------CPFCHNAELISPRKEEPGLLEKDLLAFLRKRRGILDG 67 Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 ++GGEPLL + LI+ + + G+ + ++TNG+ Sbjct: 68 -----VCISGGEPLLHTGLSGLIREMKELGYLVKLDTNGSFP 104 >gi|257867820|ref|ZP_05647473.1| pyruvate formate-lyase activating enzyme [Enterococcus casseliflavus EC30] gi|257874148|ref|ZP_05653801.1| pyruvate formate-lyase activating enzyme [Enterococcus casseliflavus EC10] gi|257801903|gb|EEV30806.1| pyruvate formate-lyase activating enzyme [Enterococcus casseliflavus EC30] gi|257808312|gb|EEV37134.1| pyruvate formate-lyase activating enzyme [Enterococcus casseliflavus EC10] Length = 251 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 30/121 (24%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 E F ++ G G RF GC +C+FC GT Sbjct: 10 TESFGSVDGPG---------IRFIVFMQGC-----------RMRCQFCHNPDTWKIGTGV 49 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETN 119 R D L + ++ + G+K G ++GGEPLLQ+D LI G ++T Sbjct: 50 ERTTDDVLEEALKYREFWGQKGG--ITVSGGEPLLQMDF-LIDLFRKAKAEGVSTTLDTC 106 Query: 120 G 120 G Sbjct: 107 G 107 >gi|299145466|ref|ZP_07038534.1| putative pyruvate formate-lyase-activating enzyme [Bacteroides sp. 3_1_23] gi|298515957|gb|EFI39838.1| putative pyruvate formate-lyase-activating enzyme [Bacteroides sp. 3_1_23] Length = 205 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 21/112 (18%) Query: 11 LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL 70 LT+ GEG F GC L +C++C RY+ +QL Sbjct: 14 LTIDGEGVTTLVA-----FHGCPL-----------RCKYCLNPTSLQPDGVWERYDCNQL 57 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI---QALNKRGFEIAVETN 119 + + + + GGEPLLQ I + L + I VET+ Sbjct: 58 YEEVRKDELYFLASCGGVTFGGGEPLLQN--EFIRQFRQLCGPEWRITVETS 107 >gi|226227077|ref|YP_002761183.1| molybdenum cofactor biosynthesis protein A [Gemmatimonas aurantiaca T-27] gi|226090268|dbj|BAH38713.1| molybdenum cofactor biosynthesis protein A [Gemmatimonas aurantiaca T-27] Length = 323 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 15/96 (15%) Query: 41 DRLSAQCRFCDTDFVGIQG----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 DR + +C++C + ++G KG +++AD++ + G K R +TGGEP Sbjct: 18 DRCNFRCQYC----MPVEGLPWLPKGDILRYEEIADIVGQLAPMGLKRLR---ITGGEPT 70 Query: 97 LQVDVP-LIQALNK-RGFE-IAVETNGTIEPPQGID 129 ++ ++P LI+ L G E IA+ TNG ++ PQ D Sbjct: 71 IRPELPRLIRMLRDIPGIEDIALSTNG-VKLPQMSD 105 >gi|296127880|ref|YP_003635130.1| Radical SAM domain protein [Cellulomonas flavigena DSM 20109] gi|296019695|gb|ADG72931.1| Radical SAM domain protein [Cellulomonas flavigena DSM 20109] Length = 338 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 29/127 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C + + G + L + E G R ++ Sbjct: 21 CNLTC--------AHC------YSSSSPHERGGTDPAALERALPELAAEGY---RVVSVS 63 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKI 143 GGEP L + + +A + G + + TNGT ++ P +D + VS D Sbjct: 64 GGEPFLYPHLQRVARAAHAAGMRVNLVTNGTVRVPSWVLDDPASLDVVAVS----LDGTA 119 Query: 144 KGGQELK 150 EL+ Sbjct: 120 SRHDELR 126 >gi|182417544|ref|ZP_02948871.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum 5521] gi|237665689|ref|ZP_04525677.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378713|gb|EDT76240.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum 5521] gi|237658636|gb|EEP56188.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum E4 str. BoNT E BL5262] Length = 264 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 36/123 (29%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F ++ G G RF GC++ +C+FC DT Sbjct: 24 ETFGSVDGPG---------VRFVTFLKGCHM-----------RCQFCHNPDT----WDIN 59 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR---GFEIAVE 117 G D+L K+G ++GGEPLLQ+D LI+ K G + ++ Sbjct: 60 GGETRTADELLSQALRYKTY-WKKGGGITVSGGEPLLQIDF-LIEFFKKAKSKGVHVTLD 117 Query: 118 TNG 120 T+G Sbjct: 118 TSG 120 >gi|325570902|ref|ZP_08146551.1| pyruvate formate-lyase activating enzyme [Enterococcus casseliflavus ATCC 12755] gi|325156306|gb|EGC68489.1| pyruvate formate-lyase activating enzyme [Enterococcus casseliflavus ATCC 12755] Length = 263 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 30/121 (24%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 E F ++ G G RF GC +C+FC GT Sbjct: 22 TESFGSVDGPG---------IRFIVFMQGC-----------RMRCQFCHNPDTWKIGTGV 61 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETN 119 R D L + ++ + G+K G ++GGEPLLQ+D LI G ++T Sbjct: 62 ERTTDDVLEEALKYREFWGQKGG--ITVSGGEPLLQMDF-LIDLFRKAKAEGVSTTLDTC 118 Query: 120 G 120 G Sbjct: 119 G 119 >gi|77920251|ref|YP_358066.1| Fe-S oxidoreductase coenzyme synthesis protein [Pelobacter carbinolicus DSM 2380] gi|77546334|gb|ABA89896.1| Fe-S oxidoreductase, putative coenzyme synthesis protein [Pelobacter carbinolicus DSM 2380] Length = 344 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 6/79 (7%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VP 102 +C +C + + ++ ++E+ G + R VL GGEPL+ V Sbjct: 36 DLRCLYC---YADSGTALADELALSEIYAVLEQAMALGIR--RVVVLGGGEPLMYPHVVE 90 Query: 103 LIQALNKRGFEIAVETNGT 121 ++Q L + G I + TNGT Sbjct: 91 IMQYLAQHGIGIDLFTNGT 109 >gi|302036912|ref|YP_003797234.1| molybdenum cofactor biosynthesis protein A [Candidatus Nitrospira defluvii] gi|300604976|emb|CBK41309.1| Molybdenum cofactor biosynthesis protein A [Candidatus Nitrospira defluvii] Length = 354 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 22/127 (17%) Query: 23 VAVFCRFSGCNLWSGREQ--DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77 +F R L S R DR + +C++C D D+ + R + ++ E Sbjct: 11 PTIFDRLGR-PLRSLRLSVTDRCNLRCKYCMPED-DYAWL-----PRDTILTFEEMAELT 63 Query: 78 WITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF--EIAVETNGTIEPPQGIDW---- 130 I E LTGGEPLL+ D+P ++ L++ EIA+ +NG + Q D Sbjct: 64 AIFTELGVDKVRLTGGEPLLRRDLPRFVRQLSENRRITEIALTSNGVLMADQAADLSFAG 123 Query: 131 ---ICVS 134 + +S Sbjct: 124 LNRVTIS 130 >gi|294678386|ref|YP_003579001.1| [pyruvate formate-lyase]-activating enzyme [Rhodobacter capsulatus SB 1003] gi|294477206|gb|ADE86594.1| [pyruvate formate-lyase]-activating enzyme-2 [Rhodobacter capsulatus SB 1003] Length = 262 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 43/117 (36%), Gaps = 23/117 (19%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77 G VF SGC +C +C DT + G R V+ L + Sbjct: 38 GMRFVFF-LSGC-----------QFRCLYCHNPDT----WKLHAGRRVAVEDLVAEVAPL 81 Query: 78 WITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKR-GFEIAVETNGTIEPPQGIDWI 131 + G +GGEP++Q +AL R G +A++T G + DW Sbjct: 82 ASFLKFAGG-VTFSGGEPMMQAAFVHATARALKDRFGLHVALDTQGHLHDRVTDDWF 137 >gi|154173832|ref|YP_001407349.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Campylobacter curvus 525.92] gi|112802456|gb|EAT99800.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Campylobacter curvus 525.92] Length = 225 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 26/128 (20%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 GRVA F+GCN+ +C +C + G+ + ++ + ++ + Sbjct: 18 GRVAAIVWFAGCNM-----------RCAYC---YNIDVVLSRGKLSAEEFCEFLDRRIGK 63 Query: 81 GEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWIC 132 V +GGE L Q +PL + + KRGF + V+TNG+ P ID+I Sbjct: 64 LSG----IVFSGGECTLSQSFLPLAREVKKRGFALKVDTNGSNLPVLKEAISQNLIDYIA 119 Query: 133 VSPKAGCD 140 + KA + Sbjct: 120 LDFKAPKE 127 >gi|169825862|ref|YP_001696020.1| hypothetical protein Bsph_0261 [Lysinibacillus sphaericus C3-41] gi|168990350|gb|ACA37890.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 305 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C FC T G V+Q +++E + + Sbjct: 29 CNL-----------ACSFCPPTARA------KGLIKVEQFNKILDEIRPHTKYIYLHVK- 70 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL + L+ A + +GF++ + TNGT+ Sbjct: 71 --GEPLLHPRIDQLLDAAHAKGFKVNITTNGTL 101 >gi|166031808|ref|ZP_02234637.1| hypothetical protein DORFOR_01509 [Dorea formicigenerans ATCC 27755] gi|166028261|gb|EDR47018.1| hypothetical protein DORFOR_01509 [Dorea formicigenerans ATCC 27755] Length = 241 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 32/122 (26%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 E F ++ G G RF +GC + +C+FC Sbjct: 8 TESFGSVDGPG---------VRFVIFTAGCPM-----------RCQFC----HNPDTWNM 43 Query: 63 GRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 + DLI++ G ++GGEPLLQ+D L + + G ++T Sbjct: 44 KTGTLTSTDDLIKKALRYRSYWGNEGGITVSGGEPLLQIDFLTELFKKAKENGIHTTLDT 103 Query: 119 NG 120 +G Sbjct: 104 SG 105 >gi|302669484|ref|YP_003829444.1| pyruvate formate-lyase activating enzyme PflA [Butyrivibrio proteoclasticus B316] gi|302393957|gb|ADL32862.1| pyruvate formate-lyase activating enzyme PflA [Butyrivibrio proteoclasticus B316] Length = 255 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 28/118 (23%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G VF GCNL +C++C DT Sbjct: 19 VETFGSVDGPGIRFI----VF--LKGCNL-----------RCKYCHNADT----WNPQSD 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 ++L D E++ E ++GGEPLLQ+D + + +RG ++T Sbjct: 58 DMRTPEELLD-FAERYRGYWGEDGGITVSGGEPLLQIDFLIEFFKMAKERGINTCIDT 114 >gi|17549186|ref|NP_522526.1| putative ribonucleotide reductase activating transmembrane protein [Ralstonia solanacearum GMI1000] gi|17431438|emb|CAD18116.1| putative ribonucleotide reductase activating transmembrane protein [Ralstonia solanacearum GMI1000] Length = 246 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 28/128 (21%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G++A VF +GC +C +C + + ++ D + + Sbjct: 44 GQLAAVVFI--AGCP-----------WRCHYC---HNPHLQERARGLDWREVLDFLGRRR 87 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 + V +GGEPL + +P LI A G I + T G +DW+ Sbjct: 88 NLLDA----VVFSGGEPLSEPRLPQLIDAARALGLRIGLHTGGIYPARFAEVLPRLDWVG 143 Query: 133 VSPKAGCD 140 + K Sbjct: 144 LDIKTTAP 151 >gi|257876713|ref|ZP_05656366.1| pyruvate formate-lyase activating enzyme [Enterococcus casseliflavus EC20] gi|257810879|gb|EEV39699.1| pyruvate formate-lyase activating enzyme [Enterococcus casseliflavus EC20] Length = 251 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 30/121 (24%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 E F ++ G G RF GC +C+FC GT Sbjct: 10 TESFGSVDGPG---------IRFIVFMQGC-----------RMRCQFCHNPDTWKIGTGV 49 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETN 119 R D L + ++ + G+K G ++GGEPLLQ+D LI G ++T Sbjct: 50 ERTTDDVLEEALKYREFWGQKGG--ITVSGGEPLLQMDF-LIDLFRKAKAEGVSTTLDTC 106 Query: 120 G 120 G Sbjct: 107 G 107 >gi|299535209|ref|ZP_07048533.1| hypothetical protein BFZC1_04293 [Lysinibacillus fusiformis ZC1] gi|298729330|gb|EFI69881.1| hypothetical protein BFZC1_04293 [Lysinibacillus fusiformis ZC1] Length = 291 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C FC T G V+Q +++E + + Sbjct: 15 CNL-----------ACSFCPPTARA------KGLIKVEQFNKILDEIRPHTKYIYLHVK- 56 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL + L+ A + +GF++ + TNGT+ Sbjct: 57 --GEPLLHPRIDQLLDAAHAKGFKVNITTNGTL 87 >gi|325262177|ref|ZP_08128915.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp. D5] gi|324033631|gb|EGB94908.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp. D5] Length = 296 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 57/181 (31%), Gaps = 59/181 (32%) Query: 1 MKLYSIKEI-FLTL-QGEGGHAGRVAVFCRFSGCNL---WSGREQDR--------LSAQC 47 M++ ++ +I + +L G G VF GCNL W + +C Sbjct: 1 MQMMTVNQIQYFSLYDGPGIRT---TVF--LQGCNLRCAWCHNPETWSLYASVSYAKERC 55 Query: 48 RFC--------------DTDFVGIQGTK-------------------GGRYNVDQLADLI 74 C D + + K G +Y+ L + + Sbjct: 56 VQCGACGSVCPSHAHIFDENKHLFEPEKCIRCGACAEVCCTEALEMNGTQYSAVGLYEKL 115 Query: 75 EEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132 E +GGEPLLQ + L K G +A+ET ++ P W Sbjct: 116 VRDQRLYEISNGGVTFSGGEPLLQWEALEEICVMLRKNGIHVAMET--ALDLP----WKT 169 Query: 133 V 133 V Sbjct: 170 V 170 >gi|217420779|ref|ZP_03452284.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia pseudomallei 576] gi|217396191|gb|EEC36208.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia pseudomallei 576] Length = 227 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 26/130 (20%) Query: 17 GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 G A VF GC +C +C + + D L + Sbjct: 14 GQFA--AVVFV--QGCP-----------WRCGYCHNPHLQPRSQPAE-IEWDALLAFLAR 57 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE-----PPQGIDW 130 + + V +GGEP + + I + + GF++ + + GT +DW Sbjct: 58 RVGLIDA----VVFSGGEPSIDPALAASIDDVRRLGFKVGLHSAGTHPRRLAHLLPSLDW 113 Query: 131 ICVSPKAGCD 140 I + KA D Sbjct: 114 IGLDVKAPFD 123 >gi|53719965|ref|YP_108951.1| putative pyruvate radical-activating enzyme [Burkholderia pseudomallei K96243] gi|53725684|ref|YP_102410.1| radical SAM domain-containing protein [Burkholderia mallei ATCC 23344] gi|76811377|ref|YP_334194.1| radical SAM domain-containing protein [Burkholderia pseudomallei 1710b] gi|121598521|ref|YP_993691.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia mallei SAVP1] gi|124384170|ref|YP_001028848.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia mallei NCTC 10229] gi|126440040|ref|YP_001059711.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia pseudomallei 668] gi|126450188|ref|YP_001081241.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia mallei NCTC 10247] gi|167001134|ref|ZP_02266935.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia mallei PRL-20] gi|167720455|ref|ZP_02403691.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia pseudomallei DM98] gi|167739449|ref|ZP_02412223.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia pseudomallei 14] gi|167825055|ref|ZP_02456526.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia pseudomallei 9] gi|167895144|ref|ZP_02482546.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia pseudomallei 7894] gi|167903530|ref|ZP_02490735.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia pseudomallei NCTC 13177] gi|167911777|ref|ZP_02498868.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia pseudomallei 112] gi|167919782|ref|ZP_02506873.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia pseudomallei BCC215] gi|238562381|ref|ZP_00440588.2| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia mallei GB8 horse 4] gi|254184291|ref|ZP_04890881.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia pseudomallei 1655] gi|254261769|ref|ZP_04952823.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia pseudomallei 1710a] gi|52210379|emb|CAH36360.1| putative pyruvate radical-activating enzyme [Burkholderia pseudomallei K96243] gi|52429107|gb|AAU49700.1| radical SAM domain protein [Burkholderia mallei ATCC 23344] gi|76580830|gb|ABA50305.1| radical SAM domain protein [Burkholderia pseudomallei 1710b] gi|121227331|gb|ABM49849.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia mallei SAVP1] gi|124292190|gb|ABN01459.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia mallei NCTC 10229] gi|126219533|gb|ABN83039.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia pseudomallei 668] gi|126243058|gb|ABO06151.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia mallei NCTC 10247] gi|184214822|gb|EDU11865.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia pseudomallei 1655] gi|238522812|gb|EEP86254.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia mallei GB8 horse 4] gi|243063082|gb|EES45268.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia mallei PRL-20] gi|254220458|gb|EET09842.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia pseudomallei 1710a] Length = 239 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 26/130 (20%) Query: 17 GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 G A VF GC +C +C + + D L + Sbjct: 26 GQFA--AVVFV--QGCP-----------WRCGYCHNPHLQPRSQPAE-IEWDALLAFLAR 69 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE-----PPQGIDW 130 + + V +GGEP + + I + + GF++ + + GT +DW Sbjct: 70 RVGLIDA----VVFSGGEPSIDPALAASIDDVRRLGFKVGLHSAGTHPRRLAHLLPSLDW 125 Query: 131 ICVSPKAGCD 140 I + KA D Sbjct: 126 IGLDVKAPFD 135 >gi|134278002|ref|ZP_01764717.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia pseudomallei 305] gi|226199930|ref|ZP_03795480.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia pseudomallei Pakistan 9] gi|254177591|ref|ZP_04884246.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia mallei ATCC 10399] gi|254191326|ref|ZP_04897830.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia pseudomallei Pasteur 52237] gi|254195707|ref|ZP_04902133.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia pseudomallei S13] gi|254199311|ref|ZP_04905677.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia mallei FMH] gi|254205625|ref|ZP_04911977.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia mallei JHU] gi|254296954|ref|ZP_04964407.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia pseudomallei 406e] gi|134251652|gb|EBA51731.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia pseudomallei 305] gi|147748907|gb|EDK55981.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia mallei FMH] gi|147753068|gb|EDK60133.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia mallei JHU] gi|157808020|gb|EDO85190.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia pseudomallei 406e] gi|157938998|gb|EDO94668.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia pseudomallei Pasteur 52237] gi|160698630|gb|EDP88600.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia mallei ATCC 10399] gi|169652452|gb|EDS85145.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia pseudomallei S13] gi|225927986|gb|EEH24023.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia pseudomallei Pakistan 9] Length = 227 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 26/130 (20%) Query: 17 GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 G A VF GC +C +C + + D L + Sbjct: 14 GQFA--AVVFV--QGCP-----------WRCGYCHNPHLQPRSQPAE-IEWDALLAFLAR 57 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE-----PPQGIDW 130 + + V +GGEP + + I + + GF++ + + GT +DW Sbjct: 58 RVGLIDA----VVFSGGEPSIDPALAASIDDVRRLGFKVGLHSAGTHPRRLAHLLPSLDW 113 Query: 131 ICVSPKAGCD 140 I + KA D Sbjct: 114 IGLDVKAPFD 123 >gi|262067515|ref|ZP_06027127.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium periodonticum ATCC 33693] gi|291378778|gb|EFE86296.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium periodonticum ATCC 33693] Length = 243 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 26/103 (25%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C +C DT K Y +++ + + Sbjct: 19 IRFVVFMQGCPL-----------RCLYCHNVDT---WELKDKNYIYTPNEILAELNKVKA 64 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 +GGEPL+Q + L + + G A++T+G Sbjct: 65 FLTGG---ITASGGEPLMQASFILELFKLCKENGIHTALDTSG 104 >gi|312879763|ref|ZP_07739563.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Aminomonas paucivorans DSM 12260] gi|310783054|gb|EFQ23452.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Aminomonas paucivorans DSM 12260] Length = 227 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 27/124 (21%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 AVF R GCNL +C FC + G ++D +++ + + Sbjct: 26 AAVFTR--GCNL-----------RCPFC----HNPELVLGRSESLDP-EEILGDLRRRRD 67 Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS 134 ++GGEP LQ + ++ + G + ++TNGT+ +D + + Sbjct: 68 FLDG-VAVSGGEPCLQSGLASFLRRVVDLGLGVKLDTNGTLPQVLEPLLEEGLVDQVALD 126 Query: 135 PKAG 138 KA Sbjct: 127 VKAP 130 >gi|260170418|ref|ZP_05756830.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D2] gi|315918774|ref|ZP_07915014.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D2] gi|313692649|gb|EFS29484.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D2] Length = 205 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 21/112 (18%) Query: 11 LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL 70 LT+ GEG F GC L +C++C RY+ +QL Sbjct: 14 LTIDGEGVTTLVA-----FHGCPL-----------RCKYCLNPTSLQPDGVWERYDCNQL 57 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI---QALNKRGFEIAVETN 119 + + + + GGEPLLQ I + L + I VET+ Sbjct: 58 YEEVRKDELYFLASCGGVTFGGGEPLLQN--EFIRQFRQLCGPEWRITVETS 107 >gi|283488054|gb|ADB24720.1| NirJ [Methylomonas sp. 16a] Length = 379 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 6/100 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + R + C+ C T I G ++ ++++ + +L+G Sbjct: 26 PVVIWNLIRRCNLTCKHCYTTSADIDFP--GELTTPEIYAVMDDLKA---FKVPVLILSG 80 Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GEPLL D+ P+ Q + GF +A+ +NGT+ I+ I Sbjct: 81 GEPLLHPDIFPISQRASDMGFYVALSSNGTLIDKNNIEQI 120 >gi|227551205|ref|ZP_03981254.1| [formate-C-acetyltransferase]-activating enzyme [Enterococcus faecium TX1330] gi|257896172|ref|ZP_05675825.1| formate acetyltransferase activating enzyme [Enterococcus faecium Com12] gi|293377172|ref|ZP_06623380.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium PC4.1] gi|227179673|gb|EEI60645.1| [formate-C-acetyltransferase]-activating enzyme [Enterococcus faecium TX1330] gi|257832737|gb|EEV59158.1| formate acetyltransferase activating enzyme [Enterococcus faecium Com12] gi|292644192|gb|EFF62294.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium PC4.1] Length = 253 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 31/127 (24%) Query: 8 EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F ++ G G VF GC +C+FC DT +G G Sbjct: 13 ETFGSVDGPGLRFV----VFM--QGC-----------RMRCQFCHNPDTWNIG----GGK 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG- 120 Y+ D+L D E + ++GGEPLLQ+D + L + +R ++T G Sbjct: 52 EYSADELLDKAERFRPY-WGDKGGITVSGGEPLLQIDFLIELFKKAKERKMHTTLDTCGK 110 Query: 121 --TIEPP 125 T E P Sbjct: 111 PFTYEDP 117 >gi|281357638|ref|ZP_06244125.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548] gi|281315895|gb|EFA99921.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548] Length = 482 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 20/98 (20%) Query: 26 FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F R CN +C +C + G T+ + +LAD + Q E Sbjct: 30 FNRL--CNY-----------RCPYC---YAGDPETELPEMSS-ELADSVIRQ--AAELGA 70 Query: 86 RYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 R V+ GGEPLL ++ I+ +N G + TNG + Sbjct: 71 RKVVILGGEPLLYPELERKIELVNSLGMGAEIFTNGAL 108 >gi|69248399|ref|ZP_00604735.1| Formate acetyltransferase activating enzyme [Enterococcus faecium DO] gi|257878034|ref|ZP_05657687.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,230,933] gi|257881180|ref|ZP_05660833.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,502] gi|257884843|ref|ZP_05664496.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,501] gi|257889767|ref|ZP_05669420.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,410] gi|257892296|ref|ZP_05671949.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,408] gi|258616472|ref|ZP_05714242.1| pyruvate formate-lyase activating enzyme [Enterococcus faecium DO] gi|260559084|ref|ZP_05831270.1| formate acetyltransferase activating enzyme [Enterococcus faecium C68] gi|293563436|ref|ZP_06677885.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1162] gi|293568151|ref|ZP_06679487.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1071] gi|294622318|ref|ZP_06701361.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium U0317] gi|314938046|ref|ZP_07845356.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133a04] gi|314941968|ref|ZP_07848829.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133C] gi|314948779|ref|ZP_07852151.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0082] gi|314951797|ref|ZP_07854836.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133A] gi|314991796|ref|ZP_07857254.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133B] gi|314995837|ref|ZP_07860924.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133a01] gi|68194435|gb|EAN08938.1| Formate acetyltransferase activating enzyme [Enterococcus faecium DO] gi|257812262|gb|EEV41020.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,230,933] gi|257816838|gb|EEV44166.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,502] gi|257820681|gb|EEV47829.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,501] gi|257826127|gb|EEV52753.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,410] gi|257828675|gb|EEV55282.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,408] gi|260074841|gb|EEW63157.1| formate acetyltransferase activating enzyme [Enterococcus faecium C68] gi|291589141|gb|EFF20953.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1071] gi|291598210|gb|EFF29308.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium U0317] gi|291604697|gb|EFF34182.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1162] gi|313589941|gb|EFR68786.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133a01] gi|313593607|gb|EFR72452.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133B] gi|313596076|gb|EFR74921.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133A] gi|313599220|gb|EFR78065.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133C] gi|313642621|gb|EFS07201.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133a04] gi|313644845|gb|EFS09425.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0082] Length = 253 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 28/119 (23%) Query: 8 EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F ++ G G VF GC +C+FC DT +G G Sbjct: 13 ETFGSVDGPGLRFV----VFM--QGC-----------RMRCQFCHNPDTWNIG----GGK 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 Y D+L D E + ++GGEPLLQ+D + L + +R ++T G Sbjct: 52 EYTADELLDKAERFRPY-WGDKGGITVSGGEPLLQIDFLIELFKKAKERKMHTTLDTCG 109 >gi|15678091|ref|NP_275205.1| molybdenum cofactor biosynthesis A (MoaA) related protein [Methanothermobacter thermautotrophicus str. Delta H] gi|2621099|gb|AAB84569.1| molybdenum cofactor biosynthesis A (MoaA) related protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 250 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 12/107 (11%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 +CR+C + + ++ D++ADLI Q I E ++ GGEP LQ D+P + Sbjct: 48 RCRYC-----FFKPSGCMNHSPDRIADLI--QRIRDETGVERVLIAGGEPTLQEDLPELT 100 Query: 106 ALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152 + F + + NGT + + W+ + DLK E K + Sbjct: 101 EILAGDFHVTISPNGTR---RDVLWMSTFHEVHVDLK--ALDEEKHI 142 >gi|261823320|ref|YP_003261426.1| glycyl-radical enzyme activating protein family [Pectobacterium wasabiae WPP163] gi|261607333|gb|ACX89819.1| glycyl-radical enzyme activating protein family [Pectobacterium wasabiae WPP163] Length = 305 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 9/107 (8%) Query: 33 NLWSGREQDRLSAQC-RFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 + RE+ C C T + + KG R +V ++ ++++ + G L+ Sbjct: 81 PFFIDRERCIQCGDCTHVCPTQALEM---KGKRMSVGEVVRELQKEENLFRRSGGGITLS 137 Query: 92 GGEPLLQVDV--PLIQALNKRGFEIAVETNG--TIEPPQGID-WICV 133 GGEPL Q + L++A ++G+ A+ET G T E + + W+ + Sbjct: 138 GGEPLAQPEFARELLKACKEKGWHTAIETTGFTTKEVVEDVFPWVDL 184 >gi|293556778|ref|ZP_06675341.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1039] gi|291601110|gb|EFF31399.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1039] Length = 253 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 28/119 (23%) Query: 8 EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F ++ G G VF GC +C+FC DT +G G Sbjct: 13 ETFGSVDGPGLRFV----VFM--QGC-----------RMRCQFCHNPDTWNIG----GGK 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 Y D+L D E + ++GGEPLLQ+D + L + +R ++T G Sbjct: 52 EYTADELLDKAERFRPY-WGDKGGITVSGGEPLLQIDFLIELFKKAKERKMHTTLDTCG 109 >gi|261403758|ref|YP_003247982.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7] gi|261370751|gb|ACX73500.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7] Length = 471 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C+ C + ++ +I+ I G+ + Sbjct: 123 CNL-----------RCKHC---YANAGRPLEDELTTEEAEKVID---ILGDAGVVAIAFS 165 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPL++ D+ LI + ++ ++++ TNGT+ Sbjct: 166 GGEPLMRKDIFKLIDKVKEKDMQVSIATNGTL 197 >gi|16081418|ref|NP_393756.1| molybdenum cofactor synthesis-step 1 (MOCS1) related protein [Thermoplasma acidophilum DSM 1728] gi|10639419|emb|CAC11421.1| molybdenum cofactor synthesis-step 1 (MOCS1) related protein [Thermoplasma acidophilum] Length = 310 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 28/110 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C+ C +G + DQ+ ++E G + + Sbjct: 9 CNL-----------RCKSC-------NAWQGKIFFPEDQIDKHLQEMKNNG---IKIVSV 47 Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134 TGGEP L + V +I+ L + F + TNGT +D + +S Sbjct: 48 TGGEPTLNKNVVDIIRKLKENHFFTHIATNGTNPYVLRKLYPYLDAVTIS 97 >gi|330835444|ref|YP_004410172.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4] gi|329567583|gb|AEB95688.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4] Length = 369 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 25/111 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C + ++ L+ IE + ++ +L+ Sbjct: 39 CNL-----------RCLHC------YSSSGTQQFYDLPLSVWIEAVKQASDMGVKHILLS 81 Query: 92 GGEPLLQVDVPLIQALN-KRGFEIAVETNGTI-------EPPQGIDWICVS 134 GGEPL + D+ LI +RG + + TNGT+ E + +D+I VS Sbjct: 82 GGEPLARRDLSLIAREAWERGIRVELSTNGTMLTRERLEELRKYVDYIGVS 132 >gi|325262719|ref|ZP_08129455.1| pyruvate formate-lyase 1-activating enzyme [Clostridium sp. D5] gi|324031813|gb|EGB93092.1| pyruvate formate-lyase 1-activating enzyme [Clostridium sp. D5] Length = 257 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 30/120 (25%) Query: 8 EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F ++ G G + +F SGC + +C+FC DT G Sbjct: 15 ESFGSVDGPGVRYI----IFM--SGC-----------AMRCQFCHNPDT----WNMQSGT 53 Query: 64 RYNVDQLA-DLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 +Y D+L ++ + G K G ++GGEPLLQ+D L Q G ++T+G Sbjct: 54 QYTADELLKQAVKYRSYWGSKGG--ITVSGGEPLLQIDFLTELFQKAKAEGIHTTLDTSG 111 >gi|126451746|ref|YP_001066995.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia pseudomallei 1106a] gi|167816652|ref|ZP_02448332.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia pseudomallei 91] gi|167846563|ref|ZP_02472071.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia pseudomallei B7210] gi|242317715|ref|ZP_04816731.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia pseudomallei 1106b] gi|126225388|gb|ABN88928.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia pseudomallei 1106a] gi|242140954|gb|EES27356.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia pseudomallei 1106b] Length = 239 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 26/130 (20%) Query: 17 GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 G A VF GC +C +C + + D L + Sbjct: 26 GQFA--AVVFV--QGCP-----------WRCGYCHNPHLQPRSQPAE-IEWDALLAFLAR 69 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE-----PPQGIDW 130 + + V +GGEP + + I + + GF+I + + GT +DW Sbjct: 70 RVGLIDA----VVFSGGEPSIDPALAASIDDVRRLGFKIGLHSAGTHPRRLAHLLPSLDW 125 Query: 131 ICVSPKAGCD 140 I + KA D Sbjct: 126 IGLDVKAPFD 135 >gi|282163323|ref|YP_003355708.1| probable molybdenum cofactor biosynthesis protein A [Methanocella paludicola SANAE] gi|282155637|dbj|BAI60725.1| probable molybdenum cofactor biosynthesis protein A [Methanocella paludicola SANAE] Length = 312 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 73/184 (39%), Gaps = 36/184 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL QC +C + GG VD++A L+ I + + Sbjct: 24 CNL-----------QCIYC---HNEGESGSGGEITVDEIARLV---RIATKYGVDRVKFS 66 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPP-------QGIDWICVS----PKAGC 139 GGEPLL+ D+ +++AL +I++ TNGT+ P G+D + +S Sbjct: 67 GGEPLLRTDLEDILRALPPL-KDISLTTNGTLLAPRAKGLKEAGLDRVNISLDTMDSGRF 125 Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199 DL + + V +N + + G + ++ + G E+ I + P Sbjct: 126 DLITQRKGQFSRVMDGINAAID--AGLTPVKLNMVYLKG-INEDEIERMIEFIRGRP--- 179 Query: 200 LSVQ 203 L +Q Sbjct: 180 LVLQ 183 >gi|229083745|ref|ZP_04216065.1| hypothetical protein bcere0022_4110 [Bacillus cereus Rock3-44] gi|228699549|gb|EEL52214.1| hypothetical protein bcere0022_4110 [Bacillus cereus Rock3-44] Length = 243 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKESGIHTTIDSSG 107 >gi|160933944|ref|ZP_02081331.1| hypothetical protein CLOLEP_02806 [Clostridium leptum DSM 753] gi|156866617|gb|EDO59989.1| hypothetical protein CLOLEP_02806 [Clostridium leptum DSM 753] Length = 284 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 22/138 (15%) Query: 24 AVFCRFSGCNLWSGREQDRLSA--------------QCRFCDTD-FVGIQGTKGGRYNVD 68 VF GCN+ + + C CD + G + G + V Sbjct: 31 TVF--LKGCNMDCAWCHNPETISFEPEMIVDESKCIGCGKCDEGCYSGAKRWVGTQKTVG 88 Query: 69 QLA-DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPP 125 Q+ +++ +Q GE G ++GGEP Q L++A + G VE+N +++ Sbjct: 89 QVLKEVLLDQPYYGEDGG--VTISGGEPTCQPVFTRELLKACKEAGISCGVESNLSVDWA 146 Query: 126 QGIDWICVSPKAGCDLKI 143 + + CDLKI Sbjct: 147 ILKEIASLCDVFMCDLKI 164 >gi|260858070|ref|YP_003231961.1| pyruvate formate lyase II activase [Escherichia coli O26:H11 str. 11368] gi|257756719|dbj|BAI28221.1| pyruvate formate lyase II activase [Escherichia coli O26:H11 str. 11368] gi|323155511|gb|EFZ41690.1| glycyl-radical enzyme activating family protein [Escherichia coli EPECa14] Length = 292 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 66/177 (37%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + + DLKI + +K+ P+V Sbjct: 139 LQRLRLWGVSCAIETAGDVPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195 >gi|237740458|ref|ZP_04570939.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 2_1_31] gi|229422475|gb|EEO37522.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 2_1_31] Length = 243 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 26/103 (25%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C +C DT K Y +++ + + Sbjct: 19 IRFVVFMQGCPL-----------RCLYCHNVDT---WELKDKNYIYTPNEILAELNKVKA 64 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 +GGEPL+Q + L + + G A++T+G Sbjct: 65 FLTGG---ITASGGEPLMQASFILELFKLCKENGIHTALDTSG 104 >gi|86741286|ref|YP_481686.1| radical SAM family protein [Frankia sp. CcI3] gi|86568148|gb|ABD11957.1| Radical SAM [Frankia sp. CcI3] Length = 332 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 41/118 (34%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C R V+Q ++E L Sbjct: 38 CNLAC--------EGCG----KIQHPADVLKQRMPVEQALAAVDECG------APVVCLA 79 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + ++ L KR I + TN + P+ ID + SP + I G +E Sbjct: 80 GGEPLMHPQIEDIVAGLVKRKKFIYLCTN-ALLIPRKIDKLRPSPYLSFAVHIDGLEE 136 >gi|167748650|ref|ZP_02420777.1| hypothetical protein ANACAC_03424 [Anaerostipes caccae DSM 14662] gi|317470908|ref|ZP_07930287.1| glycyl-radical enzyme activating protein family [Anaerostipes sp. 3_2_56FAA] gi|167651964|gb|EDR96093.1| hypothetical protein ANACAC_03424 [Anaerostipes caccae DSM 14662] gi|316901559|gb|EFV23494.1| glycyl-radical enzyme activating protein family [Anaerostipes sp. 3_2_56FAA] Length = 297 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 G +++ + + L+GGEP++Q D + L++ + G A+ET+ Sbjct: 98 GEEMTAEEVLEEVCIDQAFFRTSKGGITLSGGEPMIQADFVLELLKKSKEMGLSTAIETS 157 Query: 120 G 120 G Sbjct: 158 G 158 >gi|15679581|ref|NP_276698.1| pyruvate formate-lyase activating enzyme [Methanothermobacter thermautotrophicus str. Delta H] gi|2622709|gb|AAB86059.1| pyruvate formate-lyase activating enzyme [Methanothermobacter thermautotrophicus str. Delta H] Length = 233 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 27/122 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +F +GCN +C +C G +++ + D +E E Sbjct: 24 IF--TAGCNF-----------RCPYC---HNPELIDGGDEVDLETVLDDVERYSEFVEA- 66 Query: 85 GRYCVLTGGEPLLQVDVPLIQALNKR--GFEIAVETNGTIEPP-----QGIDWICVSPKA 137 V++GGEPLLQVD + R G ++TNG+ +D++ + KA Sbjct: 67 ---LVVSGGEPLLQVDALETVLEHARSLGLATKLDTNGSYPEALEGYCPTLDYVAIDVKA 123 Query: 138 GC 139 Sbjct: 124 PL 125 >gi|262191309|ref|ZP_06049502.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae CT 5369-93] gi|262032805|gb|EEY51350.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae CT 5369-93] Length = 246 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 52/156 (33%), Gaps = 27/156 (17%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT G V+++ + Sbjct: 25 VF--LQGC-----------LFRCKYCHNRDT----WDTHTGREVTVEEIIKEAKSYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGIDWICVSPKAG 138 G +GGE +LQ + +A G ++TNG + ID + Sbjct: 68 NASGGGVTCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYVRKFTPVIDEVL----EV 123 Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174 DL + +++ Q + N DF R+ Q Sbjct: 124 TDLVMLDIKQMDDEIHQDLIGVSNKRTLDFARYLHQ 159 >gi|170755341|ref|YP_001782853.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum B1 str. Okra] gi|169120553|gb|ACA44389.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum B1 str. Okra] Length = 232 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 23/101 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G + D++ + Sbjct: 22 VF--FQGC-----------QLRCVYCHNPDT----WDFNAGIEISSDEVLKKVLRYKPY- 63 Query: 82 EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120 K+ +GGEPL+Q + L ++ +G ++T+G Sbjct: 64 FKQVGGITCSGGEPLMQPEFLLKILKKCKNQGIHTLLDTSG 104 >gi|295084358|emb|CBK65881.1| Pyruvate-formate lyase-activating enzyme [Bacteroides xylanisolvens XB1A] Length = 205 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 21/112 (18%) Query: 11 LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL 70 LT+ GEG F GC L +C++C RY+ +QL Sbjct: 14 LTIDGEGVTTLVA-----FHGCPL-----------RCKYCLNPTSLQPDGVWERYDCNQL 57 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI---QALNKRGFEIAVETN 119 + + + + GGEPLLQ I + L + I VET+ Sbjct: 58 YEEVRKDELYFLASCGGVTFGGGEPLLQS--EFIRQFRQLCGPEWRITVETS 107 >gi|195952719|ref|YP_002121009.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932331|gb|ACG57031.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 358 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 28/127 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC + + + ++ + + D++++ + ++ VL+ Sbjct: 33 CNL-----------SCIFCYS--SAKKAKQPSYFDKNNIKDIVKKL---SDLNTKFVVLS 76 Query: 92 GGEPLLQVDVPLI-QALNKRGFEIAVETNGTI-------EPPQGIDWICVSPKAGCDLKI 143 GGEPLL D+ + + L + G +++ TNG + D++ +S D K Sbjct: 77 GGEPLLYDDIYYVSELLREHGINVSLSTNGLLIDNDNIELIKTHFDYVGIS----IDGKE 132 Query: 144 KGGQELK 150 K L+ Sbjct: 133 KTHDTLR 139 >gi|149926429|ref|ZP_01914690.1| molybdenum cofactor biosynthesis protein A [Limnobacter sp. MED105] gi|149824792|gb|EDM84006.1| molybdenum cofactor biosynthesis protein A [Limnobacter sp. MED105] Length = 372 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 25/136 (18%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + +++ + E G ++ R LTGGE Sbjct: 47 DRCNFRCVYCMPKSIFDKDYQFL--PHKDLLSFEEIERVAREFVALGVEKIR---LTGGE 101 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTI-------EPPQGIDWICVSPKAGCD 140 PLL+ ++ LI+ L + + EI + TNGT+ G++ + VS A D Sbjct: 102 PLLRKNIEILIEQLARLRTPSGKPVEITLTTNGTLLRKKSRTLKEAGLNRVTVSLDAIDD 161 Query: 141 LKIKGGQELKLVFPQV 156 K ++ +V Sbjct: 162 AVFKAMNDVDFSVDEV 177 >gi|294782458|ref|ZP_06747784.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp. 1_1_41FAA] gi|294481099|gb|EFG28874.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp. 1_1_41FAA] Length = 243 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 26/103 (25%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C +C DT K Y +++ + + Sbjct: 19 IRFVVFMQGCPL-----------RCLYCHNVDT---WELKDKNYIYTPNEILAELNKVKA 64 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 +GGEPL+Q + L + + G A++T+G Sbjct: 65 FLTGG---ITASGGEPLMQASFILELFKLCKENGIHTALDTSG 104 >gi|297618570|ref|YP_003706675.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanococcus voltae A3] gi|297618630|ref|YP_003706735.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanococcus voltae A3] gi|297377547|gb|ADI35702.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanococcus voltae A3] gi|297377607|gb|ADI35762.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanococcus voltae A3] Length = 257 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 45/181 (24%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF FS CN+ G Q+ Q + +Q+ + ++ + Sbjct: 22 VF--FSDCNMKCGYCQNYDHMQ-------------ERMQELTAEQIFNGMDRMFSEA--- 63 Query: 85 GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVSP 135 V++GGEP LQ+D L+ + + ++TNGT +D++ + Sbjct: 64 ---IVISGGEPTLQLDGVKELLIIARENNLKTKLDTNGTNPEAVKELLNENLLDYVAMDV 120 Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTN---LAISYC 192 K G D +K + N+ ++ F P++ F E+ I YC Sbjct: 121 KCGFDNYLKFTN-----YKNENIENKSEEEFK-------PINDKFKEKMKQNILKIIKYC 168 Query: 193 F 193 Sbjct: 169 K 169 >gi|153955615|ref|YP_001396380.1| glycyl radical activating protein [Clostridium kluyveri DSM 555] gi|146348473|gb|EDK35009.1| Predicted glycyl radical enzyme activator [Clostridium kluyveri DSM 555] Length = 301 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 10/111 (9%) Query: 30 SGCNLWSGREQDRLSAQ-----CRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWITGE 82 C G ++ + C C T+ K YN +Q+ +IE+Q I Sbjct: 65 QVCPYGVGINLNQRLEREKCKSCGLC-TEVCTTNSRKNLIYHYNSEQILKIIEKQRIFYR 123 Query: 83 KEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 G +GGE LQ D+ L+ L + ++A+ET+G + + D + Sbjct: 124 YSGGGVTFSGGEATLQTDILRELVNKLYDKAIDLAIETSGHFQFDKVKDIL 174 >gi|228983710|ref|ZP_04143909.1| hypothetical protein bthur0001_4290 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776018|gb|EEM24385.1| hypothetical protein bthur0001_4290 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 243 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSG 107 >gi|49480125|ref|YP_034775.1| formate acetyltransferase activating enzyme (pyruvate formate-lyase activating enzyme) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331681|gb|AAT62327.1| formate acetyltransferase activating enzyme (pyruvate formate-lyase activating enzyme) [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 243 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSG 107 >gi|254302663|ref|ZP_04970021.1| [formate-C-acetyltransferase]-activating enzyme [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322855|gb|EDK88105.1| [formate-C-acetyltransferase]-activating enzyme [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 243 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 26/103 (25%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C +C DT K Y +++ + + Sbjct: 19 IRFVVFMQGCPL-----------RCLYCHNVDT---WELKDKNYIYTPEEILAELNKVRA 64 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 +GGEPL Q + L + + G A++T+G Sbjct: 65 FLTGG---ITASGGEPLFQASFILELFKLCKENGIHTALDTSG 104 >gi|118579622|ref|YP_900872.1| radical SAM domain-containing protein [Pelobacter propionicus DSM 2379] gi|118502332|gb|ABK98814.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379] Length = 332 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + DT ++D ++E +T Sbjct: 38 CNLACSGCGRIRE----YADTMQ--------EMMSLDDCLKSVDE------CPAPVVTIT 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPLL + LIQ RG I + TNG + + +D + P ++ + G +E Sbjct: 80 GGEPLLYPQINELIQGTLDRGKHIYLCTNG-LLLEKALDSMKPHPNFTFNIHMDGLEE 136 >gi|237742524|ref|ZP_04573005.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 4_1_13] gi|256845861|ref|ZP_05551319.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp. 3_1_36A2] gi|294784957|ref|ZP_06750245.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp. 3_1_27] gi|229430172|gb|EEO40384.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 4_1_13] gi|256719420|gb|EEU32975.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp. 3_1_36A2] gi|294486671|gb|EFG34033.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp. 3_1_27] Length = 243 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 26/103 (25%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C +C DT K Y +++ + + Sbjct: 19 IRFVVFMQGCPL-----------RCLYCHNVDT---WELKDKNYIYTPEEILAELNKVKA 64 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 +GGEPL Q + L + + G A++T+G Sbjct: 65 FLTGG---ITASGGEPLFQASFILELFKLCKENGIHTALDTSG 104 >gi|52144799|ref|YP_082030.1| formate acetyltransferase activating enzyme (pyruvate formate-lyase activating enzyme) [Bacillus cereus E33L] gi|196040151|ref|ZP_03107453.1| pyruvate formate-lyase 1-activating enzyme [Bacillus cereus NVH0597-99] gi|225862489|ref|YP_002747867.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus 03BB102] gi|51978268|gb|AAU19818.1| formate acetyltransferase activating enzyme (pyruvate formate-lyase activating enzyme) [Bacillus cereus E33L] gi|196029006|gb|EDX67611.1| pyruvate formate-lyase 1-activating enzyme [Bacillus cereus NVH0597-99] gi|225788466|gb|ACO28683.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus 03BB102] Length = 243 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSG 107 >gi|219855994|ref|YP_002473116.1| hypothetical protein CKR_2651 [Clostridium kluyveri NBRC 12016] gi|219569718|dbj|BAH07702.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 311 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 10/111 (9%) Query: 30 SGCNLWSGREQDRLSAQ-----CRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWITGE 82 C G ++ + C C T+ K YN +Q+ +IE+Q I Sbjct: 75 QVCPYGVGINLNQRLEREKCKSCGLC-TEVCTTNSRKNLIYHYNSEQILKIIEKQRIFYR 133 Query: 83 KEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 G +GGE LQ D+ L+ L + ++A+ET+G + + D + Sbjct: 134 YSGGGVTFSGGEATLQTDILRELVNKLYDKAIDLAIETSGHFQFDKVKDIL 184 >gi|124027741|ref|YP_001013061.1| Fe-S oxidoreductase [Hyperthermus butylicus DSM 5456] gi|123978435|gb|ABM80716.1| predicted Fe-S oxidoreductase [Hyperthermus butylicus DSM 5456] Length = 250 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 16/93 (17%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL +C FC + T G + + I + R L Sbjct: 46 GCNL-----------RCVFCWSGRARDDPTIGFWVTAHEAYRRLR--GIARSRGYRIVRL 92 Query: 91 TGGEPLL--QVDVPLIQAL-NKRGFEIAVETNG 120 +GGEP + L+ +RG +ETNG Sbjct: 93 SGGEPTIGWSHLTELLDYFSRERGLIFVLETNG 125 >gi|47567277|ref|ZP_00237991.1| formate enzyme [Bacillus cereus G9241] gi|229154216|ref|ZP_04282337.1| hypothetical protein bcere0010_4160 [Bacillus cereus ATCC 4342] gi|47556120|gb|EAL14457.1| formate enzyme [Bacillus cereus G9241] gi|228629230|gb|EEK85936.1| hypothetical protein bcere0010_4160 [Bacillus cereus ATCC 4342] Length = 243 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSG 107 >gi|325576615|ref|ZP_08147333.1| [formate-C-acetyltransferase]-activating enzyme [Haemophilus parainfluenzae ATCC 33392] gi|325161178|gb|EGC73293.1| [formate-C-acetyltransferase]-activating enzyme [Haemophilus parainfluenzae ATCC 33392] Length = 262 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 21/135 (15%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69 F ++G+G ++F GC L C +C + +G Sbjct: 17 FSNVEGQGNRT---SIF--LQGCKL-----------NCLYCHNPETIPRYAEGAHQVS-- 58 Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQG 127 + EQ + R ++GGEP + VPL Q L + G ++++G E Sbjct: 59 -LQYLYEQAMDAVPFIRGVTVSGGEPTIHHKKLVPLFQKLREEGLTCYLDSSGFFEFDAI 117 Query: 128 IDWICVSPKAGCDLK 142 I V+ K DLK Sbjct: 118 RPLIDVTDKFLFDLK 132 >gi|229089571|ref|ZP_04220838.1| hypothetical protein bcere0021_4180 [Bacillus cereus Rock3-42] gi|300119070|ref|ZP_07056781.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus SJ1] gi|228693787|gb|EEL47483.1| hypothetical protein bcere0021_4180 [Bacillus cereus Rock3-42] gi|298723686|gb|EFI64417.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus SJ1] gi|324324548|gb|ADY19808.1| pyruvate formate-lyase-activating enzyme [Bacillus thuringiensis serovar finitimus YBT-020] Length = 243 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSG 107 >gi|257063874|ref|YP_003143546.1| predicted Fe-S oxidoreductase [Slackia heliotrinireducens DSM 20476] gi|256791527|gb|ACV22197.1| predicted Fe-S oxidoreductase [Slackia heliotrinireducens DSM 20476] Length = 397 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 18/97 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C + G + D+ +I++ + + Sbjct: 51 CNL-----------KCVHC---YAGSDAQRYDELTTDEAKTMIDDL---AAFGCPVLLFS 93 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127 GGEP ++ D+ L+ ++G + + TNGT+ P+ Sbjct: 94 GGEPTIRPDLVELMGYAKQKGMRVVISTNGTLITPEK 130 >gi|193216092|ref|YP_001997291.1| radical SAM domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193089569|gb|ACF14844.1| Radical SAM domain protein [Chloroherpeton thalassium ATCC 35110] Length = 343 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 12/89 (13%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN + R +A+C+FCD + + + L D+ + ++ T Sbjct: 5 CNYYLTY---RCNAECKFCD---IWKKPSIYA-----SLPDIQQNLTDLKRLGVQFVDFT 53 Query: 92 GGEPLLQVDVPLIQAL-NKRGFEIAVETN 119 GGEPLL D+P I + + GF ++ TN Sbjct: 54 GGEPLLHKDLPEILSFAKQLGFFTSITTN 82 >gi|170290138|ref|YP_001736954.1| glycyl-radical activating family protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170174218|gb|ACB07271.1| glycyl-radical enzyme activating protein family [Candidatus Korarchaeum cryptofilum OPF8] Length = 299 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119 G Y+V+++ + I + + G TGGEP Q L++A G VET+ Sbjct: 103 GREYSVEEVMEEIRKDVTFFDSSGGGVTFTGGEPFFQPLFLKGLLEACKAEGIHTVVETS 162 Query: 120 G 120 G Sbjct: 163 G 163 >gi|297569103|ref|YP_003690447.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296925018|gb|ADH85828.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 347 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 6/82 (7%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104 +C +C + G ++ ++ +I++ G + + VL GGEPLL ++ +I Sbjct: 40 RCIYC---YAGSGLPLADELSLAEIKQVIDQAAELGAR--KIIVLGGGEPLLYPEIFTVI 94 Query: 105 QALNKRGFEIAVETNGTIEPPQ 126 + +G + + TNGT+ P+ Sbjct: 95 DYIRGKGLQADIFTNGTLITPE 116 >gi|45358143|ref|NP_987700.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanococcus maripaludis S2] gi|44920900|emb|CAF30136.1| Radical-activating enzyme [Methanococcus maripaludis S2] Length = 268 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 58/172 (33%), Gaps = 45/172 (26%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF SGCN+ G Q+ T +++ + ++ + Sbjct: 54 VF--LSGCNMKCGYCQNYEYI-------------TTNISEMTAEEVFNSMDLMFAEA--- 95 Query: 85 GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 V++GGEP LQ + + L + +GF + ++TNGT D + K Sbjct: 96 ---LVISGGEPTLQPEAVLELAKIAKGKGFPVKLDTNGTNP-----DLV---------EK 138 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 + L + V NY + ++EN I C + Sbjct: 139 LISNNLLNYIAIDVKAGFNNYEKITGYK--------KEIKENILKIIDLCKK 182 >gi|229194825|ref|ZP_04321612.1| hypothetical protein bcere0001_4080 [Bacillus cereus m1293] gi|228588673|gb|EEK46704.1| hypothetical protein bcere0001_4080 [Bacillus cereus m1293] Length = 243 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSG 107 >gi|300855773|ref|YP_003780757.1| pyruvate formate-lyase activating enzyme [Clostridium ljungdahlii DSM 13528] gi|300435888|gb|ADK15655.1| pyruvate formate-lyase activating enzyme [Clostridium ljungdahlii DSM 13528] Length = 303 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119 Y V++L L+ + + G L+GGEPL Q D L++ L + G A+ET+ Sbjct: 105 YTVEELVKLVLKDKAFFKYGGG-VTLSGGEPLFQKDFAISLLKMLKENGIHTAIETS 160 >gi|228989633|ref|ZP_04149617.1| hypothetical protein bpmyx0001_4050 [Bacillus pseudomycoides DSM 12442] gi|228995821|ref|ZP_04155480.1| hypothetical protein bmyco0003_4180 [Bacillus mycoides Rock3-17] gi|229003440|ref|ZP_04161260.1| hypothetical protein bmyco0002_4150 [Bacillus mycoides Rock1-4] gi|228757818|gb|EEM07043.1| hypothetical protein bmyco0002_4150 [Bacillus mycoides Rock1-4] gi|228763901|gb|EEM12789.1| hypothetical protein bmyco0003_4180 [Bacillus mycoides Rock3-17] gi|228770170|gb|EEM18750.1| hypothetical protein bpmyx0001_4050 [Bacillus pseudomycoides DSM 12442] Length = 243 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSG 107 >gi|124486075|ref|YP_001030691.1| GTP cyclohydrolase subunit MoaA [Methanocorpusculum labreanum Z] gi|124363616|gb|ABN07424.1| GTP cyclohydrolase subunit MoaA [Methanocorpusculum labreanum Z] Length = 319 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 28/142 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 C+L R C + + +++++LI + E + LT Sbjct: 30 CDLRCIYCH-REGEGDNGC------TRDDHASQMTKEEISELI---GVFAELGVKTIKLT 79 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVE----TNGTIEP-------PQGIDWICVS---PKA 137 GGEPLL+ D L+ + R +E TNGT G+ + VS Sbjct: 80 GGEPLLRPD--LLDII--RSIPPHIESSLTTNGTHLAKLAKELKDAGLSRVNVSLDTMNR 135 Query: 138 GCDLKIKGGQELKLVFPQVNVS 159 +KI G LK V ++ + Sbjct: 136 DTYIKITGKDRLKDVLDGIDAA 157 >gi|307699833|ref|ZP_07636884.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Mobiluncus mulieris FB024-16] gi|307614871|gb|EFN94089.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Mobiluncus mulieris FB024-16] Length = 278 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 28/127 (22%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G++A VF GC C +C +F I + +L L+E + Sbjct: 21 GKLAAVVF--LQGCP-----------WNCGYC-QNFAIIDPKAPAQVPESELWSLLERRA 66 Query: 79 ITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-------PPQGIDW 130 + V +GGEP Q + + + GF++ + T G +DW Sbjct: 67 GLLDG----VVFSGGEPTRQPALLEAARRAKQLGFQVGLHTGGAYPRRLAALLAQNLVDW 122 Query: 131 ICVSPKA 137 I + KA Sbjct: 123 IGLDIKA 129 >gi|306817627|ref|ZP_07451370.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Mobiluncus mulieris ATCC 35239] gi|304649669|gb|EFM46951.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Mobiluncus mulieris ATCC 35239] Length = 278 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 28/127 (22%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G++A VF GC C +C +F I + +L L+E + Sbjct: 21 GKLAAVVF--LQGCP-----------WNCGYC-QNFAIIDPKAPAQVPESELWSLLERRA 66 Query: 79 ITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-------PPQGIDW 130 + V +GGEP Q + + + GF++ + T G +DW Sbjct: 67 GLLDG----VVFSGGEPTRQPALLEAARRAKQLGFQVGLHTGGAYPRRLAALLAQNLVDW 122 Query: 131 ICVSPKA 137 I + KA Sbjct: 123 IGLDIKA 129 >gi|227876678|ref|ZP_03994787.1| pyruvate radical-activating enzyme [Mobiluncus mulieris ATCC 35243] gi|269976206|ref|ZP_06183202.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Mobiluncus mulieris 28-1] gi|227842575|gb|EEJ52775.1| pyruvate radical-activating enzyme [Mobiluncus mulieris ATCC 35243] gi|269935535|gb|EEZ92073.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Mobiluncus mulieris 28-1] Length = 278 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 28/127 (22%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G++A VF GC C +C +F I + +L L+E + Sbjct: 21 GKLAAVVF--LQGCP-----------WNCGYC-QNFAIIDPKAPAQVPESELWSLLERRA 66 Query: 79 ITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-------PPQGIDW 130 + V +GGEP Q + + + GF++ + T G +DW Sbjct: 67 GLLDG----VVFSGGEPTRQPALLEAARRAKQLGFQVGLHTGGAYPRRLAALLAQNLVDW 122 Query: 131 ICVSPKA 137 I + KA Sbjct: 123 IGLDIKA 129 >gi|197304077|ref|ZP_03169102.1| hypothetical protein RUMLAC_02814 [Ruminococcus lactaris ATCC 29176] gi|197296849|gb|EDY31424.1| hypothetical protein RUMLAC_02814 [Ruminococcus lactaris ATCC 29176] Length = 249 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 28/122 (22%) Query: 7 KEIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G +F +GC + +C+FC DT + G Sbjct: 11 TESFGSVDGPGVRFI----IFV--NGCPM-----------RCQFCHNPDT----WKMQDG 49 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 D+L +KEG ++GGEPL+Q+D + L + G ++T G Sbjct: 50 EERTTDELLKTALRYRSYWKKEGG-ITVSGGEPLMQMDFMIDLFKKAKAEGVHTNIDTCG 108 Query: 121 TI 122 + Sbjct: 109 AV 110 >gi|148263090|ref|YP_001229796.1| radical SAM domain-containing protein [Geobacter uraniireducens Rf4] gi|146396590|gb|ABQ25223.1| Radical SAM domain protein [Geobacter uraniireducens Rf4] Length = 332 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + DT ++++ ++E +T Sbjct: 38 CNLACSGCGRIRE----YADTIQ--------DMMSLEECLASVDE------CPAPVVTIT 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEP L + LI+A+ +RG I + TN + + +D + P ++ + G +E Sbjct: 80 GGEPFLYPHIFELIEAVLERGKHIYLCTN-ALLLEKALDNMRPHPNFTLNIHMDGMEE 136 >gi|116754318|ref|YP_843436.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanosaeta thermophila PT] gi|116665769|gb|ABK14796.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanosaeta thermophila PT] Length = 247 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 35/116 (30%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 GR++ VF R GC +C FC + ++++LI + Sbjct: 18 GRLSAVVFLR--GCPF-----------RCPFC------QNAELQSGWTPVEISELINHLF 58 Query: 79 I------------TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 +G VL+GGEPL Q D V + + ++ RG ++ +ETNG Sbjct: 59 PRRGAGQSILHEFSGSVCIDSVVLSGGEPLAQSDAVVAIAREVDVRGLDLGIETNG 114 >gi|34763796|ref|ZP_00144710.1| Pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886434|gb|EAA23695.1| Pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 243 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 26/103 (25%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C +C DT K Y +++ + + Sbjct: 19 IRFVVFMQGCPL-----------RCLYCHNVDT---WELKDKNYIYTPEEILAELNKVKA 64 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 +GGEPL Q + L + + G A++T+G Sbjct: 65 FLTGG---ITASGGEPLFQASFILELFKLCKENGIHTALDTSG 104 >gi|331092439|ref|ZP_08341264.1| hypothetical protein HMPREF9477_01907 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401282|gb|EGG80871.1| hypothetical protein HMPREF9477_01907 [Lachnospiraceae bacterium 2_1_46FAA] Length = 303 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 73/173 (42%), Gaps = 19/173 (10%) Query: 39 EQDRLSAQCRFCDT--DFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 +Q +C+ C T D+ + G +Y + +L +++ ++ E+ L+GGE Sbjct: 76 KQCTDRTKCKVCSTCLDYCVNNAREVVGKQYTIAELVKEVDKDYMFYEESFGGVTLSGGE 135 Query: 95 PLLQVD---VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAG---CDLKIKGGQE 148 + Q L++ L ++G+ I ++T G P+ I + P D+K+ ++ Sbjct: 136 VMAQDMEYIEELLKKLKRKGYNITIDTCG--FAPEENFQIVL-PYVDTFLYDIKLMDNEK 192 Query: 149 LKLVFPQVN---VSPENYIGFDFERFSL-QPMDG--PFLEENTNLAISYCFQN 195 K Q N + Y+ + R + P+ G +E ISY +N Sbjct: 193 HKKYMGQSNELIFTNLKYLSDNGARIYIRIPVIGGVNDSDEEIQAIISYLKEN 245 >gi|317484368|ref|ZP_07943287.1| glycyl-radical enzyme activating family protein [Bilophila wadsworthia 3_1_6] gi|316924376|gb|EFV45543.1| glycyl-radical enzyme activating family protein [Bilophila wadsworthia 3_1_6] Length = 312 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 8/99 (8%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTK------GGRYNVDQLADLIEEQWITGEKEGRY 87 + +C C T G VDQ+ +E+ + + G Sbjct: 79 VNEDGTLSLDRGKCDVCKTLDCAHACPAQGMIIYGENKTVDQILKEVEKDALFYARSGGG 138 Query: 88 CVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124 L+GGEPL+ D +PL++ R + A+ET G I Sbjct: 139 MTLSGGEPLMHADIALPLLREARHRRIKTAIETCGCIPW 177 >gi|317472003|ref|ZP_07931335.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Anaerostipes sp. 3_2_56FAA] gi|316900407|gb|EFV22389.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Anaerostipes sp. 3_2_56FAA] Length = 158 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 20/102 (19%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 VF GCN + C FC + + + + + G D LA L + + I Sbjct: 21 TVF--TGGCNFF-----------CPFCHNAELISPRKEEPGLLEKDLLAFLRKRRGILDG 67 Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 ++GGEPLL + LI+ + + G+ + ++TNG+ Sbjct: 68 -----VCISGGEPLLHTGLSGLIREMKELGYLVKLDTNGSFP 104 >gi|301052164|ref|YP_003790375.1| formate acetyltransferase activating enzyme [Bacillus anthracis CI] gi|300374333|gb|ADK03237.1| formate acetyltransferase activating enzyme [Bacillus cereus biovar anthracis str. CI] Length = 243 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSG 107 >gi|42779644|ref|NP_976891.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus ATCC 10987] gi|206974358|ref|ZP_03235275.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus H3081.97] gi|217958047|ref|YP_002336591.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus AH187] gi|222094245|ref|YP_002528302.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus Q1] gi|229137313|ref|ZP_04265928.1| hypothetical protein bcere0013_4470 [Bacillus cereus BDRD-ST26] gi|42735561|gb|AAS39499.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus ATCC 10987] gi|206747598|gb|EDZ58988.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus H3081.97] gi|217063225|gb|ACJ77475.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus AH187] gi|221238300|gb|ACM11010.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus Q1] gi|228646132|gb|EEL02351.1| hypothetical protein bcere0013_4470 [Bacillus cereus BDRD-ST26] Length = 243 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSG 107 >gi|30260669|ref|NP_843046.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. Ames] gi|47525780|ref|YP_017129.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. 'Ames Ancestor'] gi|49183510|ref|YP_026762.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. Sterne] gi|65317928|ref|ZP_00390887.1| COG1180: Pyruvate-formate lyase-activating enzyme [Bacillus anthracis str. A2012] gi|165870717|ref|ZP_02215370.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0488] gi|167634817|ref|ZP_02393136.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0442] gi|167640786|ref|ZP_02399045.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0193] gi|170688631|ref|ZP_02879837.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0465] gi|170707180|ref|ZP_02897636.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0389] gi|177655125|ref|ZP_02936755.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0174] gi|190568214|ref|ZP_03021123.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis Tsiankovskii-I] gi|196034574|ref|ZP_03101982.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus W] gi|218901649|ref|YP_002449483.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus AH820] gi|227816618|ref|YP_002816627.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. CDC 684] gi|228913196|ref|ZP_04076835.1| hypothetical protein bthur0012_4400 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925699|ref|ZP_04088786.1| hypothetical protein bthur0010_4250 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931938|ref|ZP_04094832.1| hypothetical protein bthur0009_4230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944262|ref|ZP_04106638.1| hypothetical protein bthur0007_4370 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229120107|ref|ZP_04249359.1| hypothetical protein bcere0016_4240 [Bacillus cereus 95/8201] gi|229601335|ref|YP_002865113.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0248] gi|254686898|ref|ZP_05150756.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. CNEVA-9066] gi|254725978|ref|ZP_05187760.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A1055] gi|254738875|ref|ZP_05196577.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. Western North America USA6153] gi|254743741|ref|ZP_05201426.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. Kruger B] gi|254756280|ref|ZP_05208309.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. Vollum] gi|254762099|ref|ZP_05213948.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. Australia 94] gi|30254037|gb|AAP24532.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. Ames] gi|47500928|gb|AAT29604.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. 'Ames Ancestor'] gi|49177437|gb|AAT52813.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. Sterne] gi|164713551|gb|EDR19075.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0488] gi|167511180|gb|EDR86567.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0193] gi|167529891|gb|EDR92639.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0442] gi|170127958|gb|EDS96829.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0389] gi|170667491|gb|EDT18248.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0465] gi|172080274|gb|EDT65364.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0174] gi|190560706|gb|EDV14682.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis Tsiankovskii-I] gi|195992617|gb|EDX56577.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus W] gi|218536292|gb|ACK88690.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus AH820] gi|227003394|gb|ACP13137.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. CDC 684] gi|228663345|gb|EEL18933.1| hypothetical protein bcere0016_4240 [Bacillus cereus 95/8201] gi|228815413|gb|EEM61658.1| hypothetical protein bthur0007_4370 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827723|gb|EEM73463.1| hypothetical protein bthur0009_4230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833974|gb|EEM79524.1| hypothetical protein bthur0010_4250 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846601|gb|EEM91614.1| hypothetical protein bthur0012_4400 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265743|gb|ACQ47380.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0248] Length = 243 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSG 107 >gi|242280225|ref|YP_002992354.1| hopanoid biosynthesis associated radical SAM protein HpnH [Desulfovibrio salexigens DSM 2638] gi|242123119|gb|ACS80815.1| hopanoid biosynthesis associated radical SAM protein HpnH [Desulfovibrio salexigens DSM 2638] Length = 338 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 22/127 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C+ C R +V + D +EE + Sbjct: 38 CNL-----------RCKGCG-KVNQPPEILNKRLSVQECIDAVEECG------APIVSIP 79 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL- 149 GGEPLL ++P ++ L KR + + TNG I P+ I SP +L + G E+ Sbjct: 80 GGEPLLHPEIPTIVSELIKRKKFVYLCTNG-ILMPERIHEFKPSPYLTFNLHLDGPAEVH 138 Query: 150 -KLVFPQ 155 K+V Q Sbjct: 139 DKVVCKQ 145 >gi|227498357|ref|ZP_03928507.1| glycerol dehydratase activator [Acidaminococcus sp. D21] gi|226903819|gb|EEH89737.1| glycerol dehydratase activator [Acidaminococcus sp. D21] Length = 258 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 25/111 (22%) Query: 21 GRVAV-FCRFSGCNLWSGREQDRLSAQCRFCDTDF-------VGIQGTK--GGRYNVDQL 70 G V F GC L +C++C T + G+K G V + Sbjct: 23 GMRTVVF--LKGCPL-----------RCQWCSTPESQAFQVETTVDGSKSYGTEMTVTDV 69 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 + + G L+GGE L Q D + L++A + G AVET+ Sbjct: 70 MKEVRKDTAFYFISGGGMTLSGGELLAQPDFSLALLKAASMEGISTAVETS 120 >gi|257887678|ref|ZP_05667331.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,141,733] gi|257823732|gb|EEV50664.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,141,733] Length = 253 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 31/127 (24%) Query: 8 EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F ++ G G VF GC +C+FC DT +G G Sbjct: 13 ETFGSVDGPGLRFV----VFM--QGC-----------RMRCQFCHNPDTWNIG----GGK 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG- 120 Y+ D+L D E + ++GGEPLLQ+D + L + +R ++T G Sbjct: 52 EYSADELLDKAERFRPY-WGDKGGITVSGGEPLLQIDFLIELFKKAKEREMHTTLDTCGK 110 Query: 121 --TIEPP 125 T E P Sbjct: 111 PFTYEDP 117 >gi|187776866|ref|ZP_02993339.1| hypothetical protein CLOSPO_00405 [Clostridium sporogenes ATCC 15579] gi|187775525|gb|EDU39327.1| hypothetical protein CLOSPO_00405 [Clostridium sporogenes ATCC 15579] Length = 232 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 25/102 (24%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G + D++ + Sbjct: 22 VF--FQGC-----------QLRCIYCHNPDT----WDLNAGIEISSDEILKKVLRYKPY- 63 Query: 82 EKEGRYCVLTGGEPLLQVDVPLIQALNK---RGFEIAVETNG 120 K+ +GGEPL+Q + L++ L K +G A++T+G Sbjct: 64 FKQVGGITCSGGEPLMQPEF-LLEILKKSKNQGIHTALDTSG 104 >gi|253699518|ref|YP_003020707.1| hopanoid biosynthesis associated radical SAM protein HpnH [Geobacter sp. M21] gi|251774368|gb|ACT16949.1| hopanoid biosynthesis associated radical SAM protein HpnH [Geobacter sp. M21] Length = 332 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + DT ++ Q D ++E +T Sbjct: 38 CNLACSGCGRIRE----YADTIQ--------EMMSLKQCLDSVDE------CPAPVVTIT 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEP L + LI+ + RG I + TN + + +D + P ++ + G +E Sbjct: 80 GGEPFLYPHIFQLIEKVLARGKHIYLCTN-ALLLEKALDSMTPHPNLVINVHMDGMEE 136 >gi|78777438|ref|YP_393753.1| putative radical-activating enzyme [Sulfurimonas denitrificans DSM 1251] gi|78497978|gb|ABB44518.1| putative radical-activating enzyme [Sulfurimonas denitrificans DSM 1251] Length = 193 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 21/136 (15%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 +C +C D F K G+Y+ + D ++ T VL+GGE VP Sbjct: 2 RCDYCYNKDIVFA-----KDGKYSYKDILDFLK----TRVNLLEAVVLSGGEASSYNLVP 52 Query: 103 LIQALNKRGFEIAVETNGT--IEPPQGI-----DWICVSPKAGCD--LKIKGGQELKLVF 153 + + GF+I ++TNGT + + I D++ + KA +I + Sbjct: 53 FCLKIKELGFKIKLDTNGTNFLHVEELIKLNLLDYVALDYKAPMAKFTQITHSNKFDEFS 112 Query: 154 PQVNVSPENYIGFDFE 169 ++ E I F+ Sbjct: 113 KTLDFLIEQNIDFEAR 128 >gi|145591814|ref|YP_001153816.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM 13514] gi|145283582|gb|ABP51164.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 254 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 55/145 (37%), Gaps = 18/145 (12%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL G + T FV + G ++A+ + I + R + Sbjct: 46 GCNLRCGMCWAWRN-------TSFVL---SSGEWLAPAEVAERLR--GIAERRGFRQVRV 93 Query: 91 TGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 +GGEPL+ L I + K + VETNG + + P A + IKG Sbjct: 94 SGGEPLIAPVHLLQVIDSFAK--YTFIVETNGLLIDKALAKELAARPHAVVRVSIKGATA 151 Query: 149 LKLVFPQVNVSPENYIGFDFERFSL 173 + V ++ +SP Y E L Sbjct: 152 EEFV--KITMSPPQYFYKQLEALRL 174 >gi|269960975|ref|ZP_06175344.1| pyruvate formate-lyase 1 activating enzyme [Vibrio harveyi 1DA3] gi|269834194|gb|EEZ88284.1| pyruvate formate-lyase 1 activating enzyme [Vibrio harveyi 1DA3] Length = 246 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 52/165 (31%), Gaps = 36/165 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT G V+++ + Sbjct: 25 VF--LQGC-----------LMRCKYCHNRDT----WDTHDGKEVTVEEIIAEAKTYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWICVS 134 G +GGE +LQ + +A G ++TNG T + +D Sbjct: 68 NASGGGVTCSGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRKHTDVIDEVLD----- 122 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 DL + + +K Q + N DF R L + Sbjct: 123 ---ATDLVMLDLKHMKDEIHQDFIGVSNRRVLDFAR-YLHKIGQK 163 >gi|288961972|ref|YP_003452282.1| pyruvate formate lyase activating enzyme [Azospirillum sp. B510] gi|288914252|dbj|BAI75738.1| pyruvate formate lyase activating enzyme [Azospirillum sp. B510] Length = 272 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 20/96 (20%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 SGC L +C +C DT + G R ++ + I ++ Sbjct: 57 SGCPL-----------RCLYCHNPDTQHMH----DGTRTTSTEILEDIALYAEFLKRAHG 101 Query: 87 YCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 L+GGEPL+Q + +++ G A++T+G Sbjct: 102 GLTLSGGEPLVQPEFTAAILRGAKALGLHTALDTSG 137 >gi|152974265|ref|YP_001373782.1| pyruvate formate-lyase activating enzyme [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023017|gb|ABS20787.1| pyruvate formate-lyase activating enzyme [Bacillus cytotoxicus NVH 391-98] Length = 243 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG VD++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVDEIMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E ++GGEPLLQ+D + L + + G ++++G Sbjct: 67 EASEGGITVSGGEPLLQLDFLIELFKKCKEVGIHTTIDSSG 107 >gi|320102928|ref|YP_004178519.1| pyruvate formate-lyase activating enzyme [Isosphaera pallida ATCC 43644] gi|319750210|gb|ADV61970.1| pyruvate formate-lyase activating enzyme [Isosphaera pallida ATCC 43644] Length = 273 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 22/102 (21%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 A+F SGC +C++C DT G V+++ D + Sbjct: 54 AIF--LSGC-----------LLRCQYCHNPDT----WAPRNGRLVEVEEVIDRLRPYLRM 96 Query: 81 GEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120 L+GGEPL Q +A G A++T+G Sbjct: 97 MSLGHGGVTLSGGEPLYQDRFAFEIFKACRGLGLHTALDTSG 138 >gi|282895351|ref|ZP_06303552.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Raphidiopsis brookii D9] gi|281199602|gb|EFA74463.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Raphidiopsis brookii D9] Length = 262 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C +C DT G V +L IE+ Sbjct: 40 IRFVIFTQGC-----------LLRCLYCHNPDTR----DTKTGKEITVGELVTEIEKYRS 84 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 E ++GGEPLLQ + + + + A++T+G Sbjct: 85 YMEFTSGGVTISGGEPLLQPEFVREVFRQCQELNIHTALDTSG 127 >gi|257898809|ref|ZP_05678462.1| formate acetyltransferase activating enzyme [Enterococcus faecium Com15] gi|293570288|ref|ZP_06681357.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E980] gi|257836721|gb|EEV61795.1| formate acetyltransferase activating enzyme [Enterococcus faecium Com15] gi|291609695|gb|EFF38956.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E980] Length = 253 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 28/119 (23%) Query: 8 EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F ++ G G VF GC +C+FC DT +G G Sbjct: 13 ETFGSVDGPGLRFV----VFM--QGC-----------RMRCQFCHNPDTWNIG----GGK 51 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 Y+ D+L D E + ++GGEPLLQ+D + L + +R ++T G Sbjct: 52 EYSADELLDKAERFRPY-WGDKGGITVSGGEPLLQIDFLIELFKKAKEREMHTTLDTCG 109 >gi|1684728|emb|CAA98151.1| NirJ protein [Pseudomonas stutzeri] Length = 393 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 6/100 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + R + C+ C + + +I++ G R +L+G Sbjct: 30 PVVIWNLLRRCNLTCKHC--YATSADSEFRDELDTAEALKVIDDLHEAG---VRVLILSG 84 Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GEPLL+ D+ L +GF +A+ TNGT+ I+ I Sbjct: 85 GEPLLRADIFQLADYARDKGFFVALSTNGTLIDESNIERI 124 >gi|229074375|ref|ZP_04207412.1| hypothetical protein bcere0024_4050 [Bacillus cereus Rock4-18] gi|229095162|ref|ZP_04226155.1| hypothetical protein bcere0020_4190 [Bacillus cereus Rock3-29] gi|229114104|ref|ZP_04243529.1| hypothetical protein bcere0017_4090 [Bacillus cereus Rock1-3] gi|228669374|gb|EEL24791.1| hypothetical protein bcere0017_4090 [Bacillus cereus Rock1-3] gi|228688243|gb|EEL42128.1| hypothetical protein bcere0020_4190 [Bacillus cereus Rock3-29] gi|228708737|gb|EEL60873.1| hypothetical protein bcere0024_4050 [Bacillus cereus Rock4-18] Length = 243 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKEVGIHTTIDSSG 107 >gi|242278011|ref|YP_002990140.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638] gi|242120905|gb|ACS78601.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638] Length = 343 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 6/84 (7%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-P 102 +C +C + + +++ D +++ G + + +L GGEP+L + Sbjct: 37 DLRCIYC---YASSGEKLNNELDFEEITDAVDQCRDLGAR--KIIILGGGEPMLYPRIMD 91 Query: 103 LIQALNKRGFEIAVETNGTIEPPQ 126 +I+ +++ G EI + +NGT P+ Sbjct: 92 VIRYIHELGLEIELFSNGTRITPE 115 >gi|303328530|ref|ZP_07358966.1| radical SAM domain protein [Desulfovibrio sp. 3_1_syn3] gi|302861361|gb|EFL84299.1| radical SAM domain protein [Desulfovibrio sp. 3_1_syn3] Length = 480 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 14/104 (13%) Query: 31 GCNLWSGREQDRLSAQCRF-------CDTD----FVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G C CD + G T+G LA L + Sbjct: 93 GCPFDCGLCPLHAQHTCTGLVEVTMRCDLACPVCYAGAGKTEGTLPPDPPLAALAAQLDS 152 Query: 80 T-GEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGFE-IAVETNG 120 ++GGEP ++ D+P I L +RGF + + TNG Sbjct: 153 LKAASGACNVQISGGEPTIREDLPAIVTLARERGFGLVQLNTNG 196 >gi|168334966|ref|ZP_02693084.1| putative pyruvate formate-lyase 3 activating enzyme [Epulopiscium sp. 'N.t. morphotype B'] Length = 300 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 11/111 (9%) Query: 46 QCRFCDTDFVGIQG--TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP- 102 +C+ C T G + ++ + + + + G ++GGE L+QV Sbjct: 87 RCKKC-TTVCLTDACYFSGESIAIAEIVKEVCKDKLYYDSSGGGVTISGGEALMQVKAVN 145 Query: 103 -LIQALNKRGFEIAVETNGTI------EPPQGIDWICVSPKAGCDLKIKGG 146 LI L K G ++A+ET G + + +D + K K + Sbjct: 146 VLIDKLKKEGIDVAIETCGAVKAAVLRAIVEKVDLVMFDLKHIDKYKYEQA 196 >gi|78221808|ref|YP_383555.1| radical SAM family protein [Geobacter metallireducens GS-15] gi|78193063|gb|ABB30830.1| Radical SAM [Geobacter metallireducens GS-15] Length = 376 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 6/82 (7%) Query: 42 RLSAQCRFCD--TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 R + C CD + GT G + +L ++I E G + TGGEPLL+ Sbjct: 55 RCNCDCTMCDIPSKRRESAGTGGDELDTARLKEIIGEFARLGTPGLGF---TGGEPLLRP 111 Query: 100 DV-PLIQALNKRGFEIAVETNG 120 D+ L+ G + TNG Sbjct: 112 DIYELLACSRHNGMITHLNTNG 133 >gi|116754440|ref|YP_843558.1| radical SAM domain-containing protein [Methanosaeta thermophila PT] gi|116665891|gb|ABK14918.1| Radical SAM domain protein [Methanosaeta thermophila PT] Length = 325 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 18/104 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C G + ++ LI+E G +++ Sbjct: 12 CNL-----------SCSYC--RASAGPAPSGDELSTGEIKGLIKEIAPMGA----MLIIS 54 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134 GGEPLL Q + + G +++ +NGT+ P+ +D I +S Sbjct: 55 GGEPLLRQDVFEVARYAAGSGVRVSLASNGTLITPEIVDRILLS 98 >gi|20093627|ref|NP_613474.1| pyruvate-formate lyase-activating enzyme [Methanopyrus kandleri AV19] gi|19886493|gb|AAM01404.1| Pyruvate-formate lyase-activating enzyme [Methanopyrus kandleri AV19] Length = 219 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 22/120 (18%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GC L +C +C G + +V+ + +E+ + + Sbjct: 25 TQGCPL-----------RCPWCHNPETR-DPNGGKKADVETILRDVEKYAVYLDA----L 68 Query: 89 VLTGGEPLLQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144 +++GGEPLLQ L +AL + G ++ ++T+G P + I + DLK Sbjct: 69 IVSGGEPLLQPCEEL-KALARGARGLGLKVVLDTSG-FPPDRLGKVISSFDRVALDLKAP 126 >gi|301155416|emb|CBW14882.1| unnamed protein product [Haemophilus parainfluenzae T3T1] Length = 262 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 21/135 (15%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69 F ++G+G ++F GC L + + + +Y +Q Sbjct: 17 FSNVEGQGNRT---SIF--LQGCKLNCLYCHNPETIP------RYAEGAHQVSLQYLYEQ 65 Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQG 127 + D + R ++GGEP + VPL Q L + G ++++G E Sbjct: 66 VMDAV--------PFIRGVTVSGGEPTIHHKKLVPLFQKLREEGLTCYLDSSGFFEFDAI 117 Query: 128 IDWICVSPKAGCDLK 142 I V+ K DLK Sbjct: 118 RPLIEVTDKFLFDLK 132 >gi|171320975|ref|ZP_02909966.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria MEX-5] gi|171093770|gb|EDT38910.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria MEX-5] Length = 372 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 25/142 (17%) Query: 41 DRLSAQCRFC---DT---DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 D+ + +C +C D+ D+ + + R + QL + G ++ R LTGGE Sbjct: 48 DQCNFRCGYCMPRDSFGPDYAFMPSS--ERLSFAQLEKIARAFISLGVEKIR---LTGGE 102 Query: 95 PLLQVDVP-LIQALN------KRGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ ++ LI+ L + EIA+ TNG++ G+ + VS A D Sbjct: 103 PLLRRNLEALIERLATLTTIDGKPVEIALTTNGSLLAAKARTLRDAGLSRVTVSLDAIDD 162 Query: 141 LKIKGGQELKLVFPQVNVSPEN 162 + + + + +V E Sbjct: 163 VVFRRMSDADVPVARVLAGIEA 184 >gi|170759160|ref|YP_001788923.1| radical SAM domain-containing protein [Clostridium botulinum A3 str. Loch Maree] gi|169406149|gb|ACA54560.1| radical SAM domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 278 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 63/175 (36%), Gaps = 38/175 (21%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDT--------------DF 54 F ++ G G A+F F GCN + + C+ C T D Sbjct: 12 FSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYNAVEFLGDS 66 Query: 55 VGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 V K G R + ++I+E T ++GGE LQ Sbjct: 67 VKWDENKCRNCGICLEKCKNNCGPRNKYMSVGEIIKEILKTKPFISG-ITVSGGECTLQK 125 Query: 100 D--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152 D + L + + G I V+TNG+++ + + A D+K +E K++ Sbjct: 126 DFLIDLFEKVKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMVDVKSFDNEEHKML 180 >gi|229171293|ref|ZP_04298882.1| hypothetical protein bcere0006_4220 [Bacillus cereus MM3] gi|228612187|gb|EEK69420.1| hypothetical protein bcere0006_4220 [Bacillus cereus MM3] Length = 243 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKEVGIHTTIDSSG 107 >gi|153813520|ref|ZP_01966188.1| hypothetical protein RUMOBE_03941 [Ruminococcus obeum ATCC 29174] gi|149830391|gb|EDM85483.1| hypothetical protein RUMOBE_03941 [Ruminococcus obeum ATCC 29174] Length = 235 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 18/102 (17%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 +F CN +C FC + + +++ ++++ + Sbjct: 24 ATIF--LGSCNF-----------RCPFCQNSSLVLHPADEPVIPEEEVLSFLKKRRGILD 70 Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 ++GGEP L D+ I ++ G+ + ++TNGT Sbjct: 71 G----VCISGGEPTLASDLEDFICKIHALGYPVKLDTNGTRP 108 >gi|167581236|ref|ZP_02374110.1| radical SAM domain protein [Burkholderia thailandensis TXDOH] Length = 239 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 26/128 (20%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G++A VF GC +C +C + + D L + + Sbjct: 26 GQLAAVVFV--QGCP-----------WRCGYCHNPHLQPRSRPAE-IEWDALLAFLARRV 71 Query: 79 ITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 + V +GGEP + I + + GF++ + + GT +DWI Sbjct: 72 GLIDA----VVFSGGEPSIDPALAAAIDDVRRLGFKVGMHSAGTHPRRLSQLLPSLDWIG 127 Query: 133 VSPKAGCD 140 + KA D Sbjct: 128 LDVKAPFD 135 >gi|149191035|ref|ZP_01869296.1| pyruvate formate lyase activating enzyme 1 [Vibrio shilonii AK1] gi|148835169|gb|EDL52145.1| pyruvate formate lyase activating enzyme 1 [Vibrio shilonii AK1] Length = 246 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 52/165 (31%), Gaps = 36/165 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C +C DT G +VD+L + Sbjct: 25 VF--LQGC-----------LMRCMYCHNRDT----WDTHGGKEVSVDELIAEAKSYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWICVS 134 G +GGE +LQ + +A G ++TNG T + +D Sbjct: 68 NASGGGITCSGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRKHTDVIDEVLD----- 122 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 DL + + +K Q + N DF R L + Sbjct: 123 ---ATDLVMLDIKHMKDEIHQDFIGVSNRRTLDFAR-YLHKIGQK 163 >gi|83720018|ref|YP_442340.1| radical SAM domain-containing protein [Burkholderia thailandensis E264] gi|167619323|ref|ZP_02387954.1| radical SAM domain protein [Burkholderia thailandensis Bt4] gi|257138539|ref|ZP_05586801.1| radical SAM domain-containing protein [Burkholderia thailandensis E264] gi|83653843|gb|ABC37906.1| radical SAM domain protein [Burkholderia thailandensis E264] Length = 239 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 26/128 (20%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G++A VF GC +C +C + + D L + + Sbjct: 26 GQLAAVVFV--QGCP-----------WRCGYCHNPHLQPRSRPAE-IEWDALLAFLARRV 71 Query: 79 ITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 + V +GGEP + I + + GF++ + + GT +DWI Sbjct: 72 GLIDA----VVFSGGEPSIDPALAAAIDDVRRLGFKVGMHSAGTHPRRLSRLLPSLDWIG 127 Query: 133 VSPKAGCD 140 + KA D Sbjct: 128 LDVKAPFD 135 >gi|158522579|ref|YP_001530449.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfococcus oleovorans Hxd3] gi|158511405|gb|ABW68372.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfococcus oleovorans Hxd3] Length = 229 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 17/94 (18%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCN C +C + + AD + Sbjct: 26 GCNY-----------HCPYC----HNPDLVRPKGPDFMSEADFFA-FLSERTHFLDGVSI 69 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 TGGEP LQ D+ + + GF + ++TNG++ Sbjct: 70 TGGEPCLQPDLADFCAKIKEMGFLVKLDTNGSLP 103 >gi|157374846|ref|YP_001473446.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sediminis HAW-EB3] gi|157317220|gb|ABV36318.1| (Formate-C-acetyltransferase)-activating enzyme [Shewanella sediminis HAW-EB3] Length = 246 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 43/122 (35%), Gaps = 33/122 (27%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F T+ G G RF GC +C++C DT Sbjct: 11 ESFGTVDGPG---------IRFITFMQGC-----------LMRCQYCHNRDT----WDLH 46 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G VD+L I E G +GGE +LQ + L +A K G ++T Sbjct: 47 GGREIEVDELMTQIISYRPFLEASGGGVTASGGEAILQAEFVSALFKACKKEGIHTCLDT 106 Query: 119 NG 120 NG Sbjct: 107 NG 108 >gi|306820990|ref|ZP_07454609.1| [formate-C-acetyltransferase]-activating enzyme [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550931|gb|EFM38903.1| [formate-C-acetyltransferase]-activating enzyme [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 259 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 23/143 (16%) Query: 4 YSIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61 + I F ++G+G ++F GCN+ + +G Sbjct: 9 LPVHRIIPFSNVEGQGNRT---SIF--LQGCNINCLYCHNPEM----------IGFSNDD 53 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 ++ L D I+ R ++GGE + D V L + ++K G ++TN Sbjct: 54 THNMTIETLIDKIKNNMPF----IRGITMSGGEATIHSDKLVILFKEVHKLGLTCYIDTN 109 Query: 120 GTIEPPQGIDWICVSPKAGCDLK 142 G + + + + + K D+K Sbjct: 110 GYFDIDEKKEMVEHTDKFLFDVK 132 >gi|290969108|ref|ZP_06560638.1| pyruvate formate-lyase 1-activating enzyme [Megasphaera genomosp. type_1 str. 28L] gi|290780868|gb|EFD93466.1| pyruvate formate-lyase 1-activating enzyme [Megasphaera genomosp. type_1 str. 28L] Length = 249 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 18/100 (18%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ--WITGE 82 VF GC +CR+C +G K Y + +D++ E + T Sbjct: 27 VF--LQGC-----------RMRCRYCHNPETWQEG-KYSSYTLQYASDILREALRYRTYW 72 Query: 83 KEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 K G ++GGEPLLQ D L +RG ++T G Sbjct: 73 KNGGGITVSGGEPLLQPDFVRELFTLAKERGIHTVLDTAG 112 >gi|254974377|ref|ZP_05270849.1| pyruvate formate-lyase activating enzyme [Clostridium difficile QCD-66c26] gi|255091770|ref|ZP_05321248.1| pyruvate formate-lyase activating enzyme [Clostridium difficile CIP 107932] gi|255099873|ref|ZP_05328850.1| pyruvate formate-lyase activating enzyme [Clostridium difficile QCD-63q42] gi|255305762|ref|ZP_05349934.1| pyruvate formate-lyase activating enzyme [Clostridium difficile ATCC 43255] gi|255313501|ref|ZP_05355084.1| pyruvate formate-lyase activating enzyme [Clostridium difficile QCD-76w55] gi|255516189|ref|ZP_05383865.1| pyruvate formate-lyase activating enzyme [Clostridium difficile QCD-97b34] gi|255649285|ref|ZP_05396187.1| pyruvate formate-lyase activating enzyme [Clostridium difficile QCD-37x79] gi|260682455|ref|YP_003213740.1| pyruvate formate-lyase activating enzyme [Clostridium difficile CD196] gi|260686054|ref|YP_003217187.1| pyruvate formate-lyase activating enzyme [Clostridium difficile R20291] gi|306519384|ref|ZP_07405731.1| pyruvate formate-lyase activating enzyme [Clostridium difficile QCD-32g58] gi|260208618|emb|CBA61346.1| pyruvate formate-lyase activating enzyme [Clostridium difficile CD196] gi|260212070|emb|CBE02658.1| pyruvate formate-lyase activating enzyme [Clostridium difficile R20291] Length = 244 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 34/131 (25%) Query: 8 EIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F T+ G G R F GC L +C++C DT Sbjct: 10 ETFGTVDGPG---------IRYILFFQGCPL-----------RCKYCHNRDT----WDIK 45 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G Y VD++ + + G +GGE LQ + L + + ++T Sbjct: 46 SGKEYTVDEIITDALKYTSFMKFSGGGITASGGESTLQPEFLSELFKKAKENDIHTCLDT 105 Query: 119 NGTIEPPQGID 129 +G ++ + ID Sbjct: 106 SGFVDI-ETID 115 >gi|27365428|ref|NP_760956.1| pyruvate formate lyase-activating enzyme 1 [Vibrio vulnificus CMCP6] gi|37680529|ref|NP_935138.1| pyruvate formate lyase-activating enzyme 1 [Vibrio vulnificus YJ016] gi|320155814|ref|YP_004188193.1| pyruvate formate-lyase activating enzyme [Vibrio vulnificus MO6-24/O] gi|27361575|gb|AAO10483.1| pyruvate formate-lyase 1-activating enzyme [Vibrio vulnificus CMCP6] gi|37199277|dbj|BAC95109.1| pyruvate-formate lyase-activating enzyme [Vibrio vulnificus YJ016] gi|319931126|gb|ADV85990.1| pyruvate formate-lyase activating enzyme [Vibrio vulnificus MO6-24/O] Length = 246 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 27/154 (17%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C +C DT G V+++ + Sbjct: 21 IRFIVFMQGC-----------LMRCMYCHNRDT----WDTHDGKEVTVEEIIKEAKSYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKA 137 G +GGE +LQ + L +A + G ++TNG I + + Sbjct: 66 FMNASGGGITCSGGEAMLQPEFVRDLFRAAHAEGIHTCLDTNGYIRKHTDVVDEVL---E 122 Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171 DL + + +K + N DF R+ Sbjct: 123 ATDLVMLDIKHMKDEIHHDFIGVSNRRTLDFARY 156 >gi|222055504|ref|YP_002537866.1| radical SAM protein [Geobacter sp. FRC-32] gi|221564793|gb|ACM20765.1| Radical SAM domain protein [Geobacter sp. FRC-32] Length = 291 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 30/124 (24%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + C +G ++ ++ ++++ +I G R VLT Sbjct: 19 CNLNCNK-----------C------YAPKEGSEASLAEIKHVLDKLYIAGL---RRVVLT 58 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI------EPPQGIDWICVS---PKAGCDL 141 GGEP ++ DV + Q K GF + + TNG + E + WI +S P A D Sbjct: 59 GGEPTVREDVADIAQYAKKIGFAVYLSTNGLLLKQIWKEISPYLSWISISLDAPSAELDK 118 Query: 142 KIKG 145 I G Sbjct: 119 IITG 122 >gi|172065715|ref|YP_001816427.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria MC40-6] gi|171997957|gb|ACB68874.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria MC40-6] Length = 371 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 25/142 (17%) Query: 41 DRLSAQCRFC---DT---DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 D+ + +C +C D+ D+ + + R + QL + G ++ R LTGGE Sbjct: 47 DQCNFRCGYCMPRDSFGPDYAFMPSS--ERLSFAQLEKIARAFISLGVEKIR---LTGGE 101 Query: 95 PLLQVDVP-LIQALN------KRGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ ++ LI+ L + EIA+ TNG++ G+ + VS A D Sbjct: 102 PLLRRNLEALIERLATLTTVDGKPVEIALTTNGSLLAAKARTLRDAGLSRVTVSLDAIDD 161 Query: 141 LKIKGGQELKLVFPQVNVSPEN 162 + ++++ +V E Sbjct: 162 TVFRRMSDVEVPVARVLAGIEA 183 >gi|126698338|ref|YP_001087235.1| pyruvate formate-lyase activating enzyme [Clostridium difficile 630] gi|115249775|emb|CAJ67592.1| Pyruvate formate-lyase activating enzyme [Clostridium difficile] Length = 244 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 34/131 (25%) Query: 8 EIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F T+ G G R F GC L +C++C DT Sbjct: 10 ETFGTVDGPG---------IRYILFFQGCPL-----------RCKYCHNRDT----WDIK 45 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G Y VD++ + + G +GGE LQ + L + + ++T Sbjct: 46 SGKEYTVDEIITDALKYTSFMKFSGGGITASGGESTLQPEFLSELFKKAKENDIHTCLDT 105 Query: 119 NGTIEPPQGID 129 +G ++ + ID Sbjct: 106 SGFVDI-ETID 115 >gi|187777435|ref|ZP_02993908.1| hypothetical protein CLOSPO_01002 [Clostridium sporogenes ATCC 15579] gi|187774363|gb|EDU38165.1| hypothetical protein CLOSPO_01002 [Clostridium sporogenes ATCC 15579] Length = 279 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 65/180 (36%), Gaps = 38/180 (21%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDT--------------DF 54 F ++ G G A+F F GCN + + C+ C T D Sbjct: 13 FSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDS 67 Query: 55 VGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 V K G R + ++I+E T ++GGE LQ Sbjct: 68 VKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKEILRTKPFISG-ITVSGGECTLQK 126 Query: 100 D--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 D + L + + G I V+TNG+++ + + A D+K QE K++ + N Sbjct: 127 DFLIDLFEKVKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMVDVKSFDNQEHKMLTKRDN 186 >gi|269126251|ref|YP_003299621.1| Radical SAM domain-containing protein [Thermomonospora curvata DSM 43183] gi|268311209|gb|ACY97583.1| Radical SAM domain protein [Thermomonospora curvata DSM 43183] Length = 315 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 19/101 (18%) Query: 47 CRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 C FC D + R + +++ L+ E + GGEPLL + Sbjct: 26 CLFCFATFRDVRRTVLPQGHLDRRDAERVVRLLAEAGFSK------ITFAGGEPLLCPWL 79 Query: 102 P-LIQALNKRGFEIAVETNGTIEPPQGID-------WICVS 134 P L++ G A+ TNG++ +D WI VS Sbjct: 80 PDLVELACDLGVTTALVTNGSLLDEAMLDRLAGTLEWITVS 120 >gi|254471421|ref|ZP_05084823.1| elongator protein 3/MiaB/NifB [Pseudovibrio sp. JE062] gi|211959567|gb|EEA94765.1| elongator protein 3/MiaB/NifB [Pseudovibrio sp. JE062] Length = 373 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C+ C T G + +Q ++I++ + + Sbjct: 5 CNL-----------KCKHCYT--TSGDVDFPGELSTEQAYEVIDDLK---GFRVPVIIFS 48 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GGEPL++ D + L + GF A+ TNGT+ Sbjct: 49 GGEPLMRPDMLELSAHAKQLGFYTALSTNGTL 80 >gi|189485586|ref|YP_001956527.1| hypothetical protein TGRD_583 [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287545|dbj|BAG14066.1| conserved hypothetical protein [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 197 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 27/130 (20%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G A +F GCN+ C +C + N +++ ++++ Sbjct: 16 GTPAAVIF--TQGCNML-----------CPYCHNPQLVYPYLFEKTLNENEILYFLKKRQ 62 Query: 79 ITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG-------IDW 130 + V+TGGEP LQ D+ I+ + F + ++TNGT ID+ Sbjct: 63 GLLKG----VVITGGEPTLQNDLFNFIKKIKNLKFLVKLDTNGTNPKILQELIREKLIDF 118 Query: 131 ICVSPKAGCD 140 + + K+ + Sbjct: 119 VAMDIKSSAE 128 >gi|229015831|ref|ZP_04172806.1| hypothetical protein bcere0030_4180 [Bacillus cereus AH1273] gi|229022037|ref|ZP_04178593.1| hypothetical protein bcere0029_4030 [Bacillus cereus AH1272] gi|228739293|gb|EEL89733.1| hypothetical protein bcere0029_4030 [Bacillus cereus AH1272] gi|228745463|gb|EEL95490.1| hypothetical protein bcere0030_4180 [Bacillus cereus AH1273] Length = 243 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLTQLFKKCKEAGIHTTIDSSG 107 >gi|120598447|ref|YP_963021.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sp. W3-18-1] gi|146293475|ref|YP_001183899.1| pyruvate formate lyase-activating enzyme 1 [Shewanella putrefaciens CN-32] gi|120558540|gb|ABM24467.1| pyruvate formate-lyase activating enzyme [Shewanella sp. W3-18-1] gi|145565165|gb|ABP76100.1| pyruvate formate-lyase activating enzyme [Shewanella putrefaciens CN-32] gi|319426779|gb|ADV54853.1| pyruvate formate-lyase activating enzyme [Shewanella putrefaciens 200] Length = 246 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 41/123 (33%), Gaps = 33/123 (26%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F T+ G G RF GC +C++C DT Sbjct: 10 VESFGTVDGPG---------IRFIAFMQGC-----------LMRCQYCHNRDT----WDL 45 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117 G VD+L I + +GGE +LQ + L +A G ++ Sbjct: 46 DGGKEVQVDELMSQIISYRPFLDASNGGVTASGGEAILQAEFVAELFKACKNEGVHTCLD 105 Query: 118 TNG 120 TNG Sbjct: 106 TNG 108 >gi|307720175|ref|YP_003891315.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Sulfurimonas autotrophica DSM 16294] gi|306978268|gb|ADN08303.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Sulfurimonas autotrophica DSM 16294] Length = 233 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 26/113 (23%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 +F FSGCN+ +C FC D F K G Y ++ + Sbjct: 30 LACIFW-FSGCNM-----------RCDFCYNKDIVFA-----KKGSYTLEDALAFL---- 68 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT--IEPPQGID 129 T E VL+GGE + + K GF I ++TNGT + Q ID Sbjct: 69 RTREHLLDAVVLSGGEASSYDLTAFCRQIKKLGFLIKLDTNGTNYLHVKQLID 121 >gi|323342337|ref|ZP_08082569.1| pyruvate formate-lyase activating enzyme [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463449|gb|EFY08643.1| pyruvate formate-lyase activating enzyme [Erysipelothrix rhusiopathiae ATCC 19414] Length = 247 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 23/127 (18%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 SGC L +C FC D + VD+L D + ++G Sbjct: 29 LSGCPL-----------RCLFCHNPD----MWKTDPEDAITVDELMDKLRRFKPYFGEDG 73 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143 GGEPL Q + ++A G ++T+G P D + V+ D+K Sbjct: 74 G-VTFCGGEPLNQPEFLYEAMKACKAEGISTCLDTSGFGRPDTFDDILSVTDTILYDIK- 131 Query: 144 KGGQELK 150 G +E K Sbjct: 132 -GLEEKK 137 >gi|150018872|ref|YP_001311126.1| glycyl-radical activating family protein [Clostridium beijerinckii NCIMB 8052] gi|149905337|gb|ABR36170.1| glycyl-radical enzyme activating protein family [Clostridium beijerinckii NCIMB 8052] Length = 306 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 KG + ++Q+ +++ I + G L+GGEPL+Q D L +A +G+ A+ET Sbjct: 108 KGKKMTIEQVIKELKKDAINYRRSGGGITLSGGEPLVQSDFSKELFKACKAQGWHTAIET 167 Query: 119 NG 120 G Sbjct: 168 TG 169 >gi|11499591|ref|NP_070833.1| heme biosynthesis protein (nirJ-2) [Archaeoglobus fulgidus DSM 4304] gi|2648528|gb|AAB89245.1| heme biosynthesis protein (nirJ-2) [Archaeoglobus fulgidus DSM 4304] Length = 468 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C+ C + D+ + I++ G + Sbjct: 124 CNL-----------RCKHC---YATAGKPLQDELTTDEALETIDKLDRLGVT---IIAFS 166 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPL++ D+ L + ++G +A+ TNGT+ Sbjct: 167 GGEPLVRRDIFELTRYAAEKGIYVAIATNGTL 198 >gi|315925289|ref|ZP_07921501.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter alactolyticus ATCC 23263] gi|315621410|gb|EFV01379.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter alactolyticus ATCC 23263] Length = 246 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 42/119 (35%), Gaps = 28/119 (23%) Query: 8 EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F ++ G G +F GC +C FC DT Sbjct: 11 ETFGSVDGPGIRFV----IF--LKGC-----------RMRCLFCHNADT----WDPKSDI 49 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 D+L D E ++G ++GGEPLLQ+ + L RG ++T G Sbjct: 50 MMTADELLDQAERYRPYWGRKGG-ITVSGGEPLLQIEFLLELFTKAKARGIHTCLDTCG 107 >gi|149276421|ref|ZP_01882565.1| putative pyruvate formate-lyase 1 activating enzyme [Pedobacter sp. BAL39] gi|149232941|gb|EDM38316.1| putative pyruvate formate-lyase 1 activating enzyme [Pedobacter sp. BAL39] Length = 260 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 32/121 (26%) Query: 8 EIFLTLQGEGGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTK 61 E F G H G R+ VF GC +C +C D+ + Sbjct: 27 ETF------GTHDGPGIRMVVFV--QGC-----------QFRCLYCQNPDS----LDVKG 63 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETN 119 G +D+L Q +EG ++GGEPLLQ + L++ G +++N Sbjct: 64 GRLVEIDELVKRALRQKTYFGEEGG-VTVSGGEPLLQRSKLTAFFKKLHEHGINTCLDSN 122 Query: 120 G 120 G Sbjct: 123 G 123 >gi|163938437|ref|YP_001643321.1| pyruvate formate-lyase activating enzyme [Bacillus weihenstephanensis KBAB4] gi|229009930|ref|ZP_04167149.1| hypothetical protein bmyco0001_4000 [Bacillus mycoides DSM 2048] gi|229056285|ref|ZP_04195706.1| hypothetical protein bcere0026_4160 [Bacillus cereus AH603] gi|229165447|ref|ZP_04293231.1| hypothetical protein bcere0007_4350 [Bacillus cereus AH621] gi|163860634|gb|ABY41693.1| pyruvate formate-lyase activating enzyme [Bacillus weihenstephanensis KBAB4] gi|228618045|gb|EEK75086.1| hypothetical protein bcere0007_4350 [Bacillus cereus AH621] gi|228721090|gb|EEL72628.1| hypothetical protein bcere0026_4160 [Bacillus cereus AH603] gi|228751361|gb|EEM01168.1| hypothetical protein bmyco0001_4000 [Bacillus mycoides DSM 2048] Length = 243 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLTQLFKKCKEAGIHTTIDSSG 107 >gi|322420929|ref|YP_004200152.1| hopanoid biosynthesis associated radical SAM protein HpnH [Geobacter sp. M18] gi|320127316|gb|ADW14876.1| hopanoid biosynthesis associated radical SAM protein HpnH [Geobacter sp. M18] Length = 332 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + DT + + + ++E +T Sbjct: 38 CNLACSGCGRIRE----YADTIQ--------EMMTLQECLNSVDE------CPAPVVTIT 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEP L + LI A+ KRG I + TN + + +D + P ++ + G +E Sbjct: 80 GGEPFLYPHIFELIDAVLKRGKHIYLCTN-ALLLEKALDTLKPHPNFVLNVHLDGMEE 136 >gi|145592440|ref|YP_001154442.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM 13514] gi|145284208|gb|ABP51790.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 380 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 18/96 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C ++ + G + D++++ E + T Sbjct: 46 CNL-----------RCVHC---YIDAGPAEAGELTTKEALDVVDQM---AEVGVPLILFT 88 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ 126 GGEPL++ D + + G ++ + TNGT+ P+ Sbjct: 89 GGEPLIRPDFFEIAEQARDVGIKLVLSTNGTLITPE 124 >gi|117619525|ref|YP_856225.1| pyruvate formate lyase-activating enzyme 1 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560932|gb|ABK37880.1| pyruvate formate-lyase activating enzyme [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 272 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G V +L I Sbjct: 46 IRFIVFMQGC-----------LMRCKYCHNRDT----WDTQGGREVTVPELMSDITSYRH 90 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + L A ++G ++TNG Sbjct: 91 FMNASGGGVTASGGEAMLQQNFIAELFAACKEKGIHTCLDTNG 133 >gi|237813104|ref|YP_002897555.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia pseudomallei MSHR346] gi|237503403|gb|ACQ95721.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia pseudomallei MSHR346] Length = 227 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 26/130 (20%) Query: 17 GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 G A VF GC +C +C + + D L + Sbjct: 14 GQFA--AVVFV--QGCP-----------WRCGYCHNPHLQPRSQPAE-IEWDALLAFLAR 57 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE-----PPQGIDW 130 + + V +GGEP + + I + + GF++ + + GT +DW Sbjct: 58 RVGLIDA----VVFSGGEPSIDPALAASIHDVRRLGFKVGLHSAGTHPRRLAHLLPSLDW 113 Query: 131 ICVSPKAGCD 140 I + KA D Sbjct: 114 IGLDVKAPFD 123 >gi|210609920|ref|ZP_03288174.1| hypothetical protein CLONEX_00358 [Clostridium nexile DSM 1787] gi|210152713|gb|EEA83719.1| hypothetical protein CLONEX_00358 [Clostridium nexile DSM 1787] Length = 260 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 62/183 (33%), Gaps = 27/183 (14%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQG---TKGGRYNVDQLADLIEEQWITGEKEGRY 87 GC L +C++C T G + + +I + + G Sbjct: 30 GCPL-----------RCQWCSTPESQSIECMMDYGYDATPESIMKIIRKDEVFYFHSGGG 78 Query: 88 CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN--GTIEPPQG----IDWICVSPKAGC 139 ++GGE LLQ D +++ G A+E++ G E + ++ + V K Sbjct: 79 VTISGGEVLLQSDFVRDILKECRDEGINTAIESSLYGPYEALEKMLPYLNTVFVDFKLAD 138 Query: 140 D---LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196 + LK G K++ + + G R P EEN L + Sbjct: 139 EQQHLKYTGASN-KIIKDNIRRMDAEFTGDIHVRIPTIPTIN-MTEENMRLTAEFVRPLK 196 Query: 197 KWR 199 + R Sbjct: 197 QVR 199 >gi|119871970|ref|YP_929977.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM 4184] gi|119673378|gb|ABL87634.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184] Length = 259 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 16/118 (13%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL G + T +V T G + ++AD + I EK + Sbjct: 51 GCNLRCGMCWAWRN-------TSYVL---TAGAWMSPYEVADKLR--KIVKEKGFNQVRI 98 Query: 91 TGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146 +GGEPL+ + +I L + VETNG + + P A + IKG Sbjct: 99 SGGEPLIAPKHLIKVIDELRD--YVFIVETNGILIDKAVAKELAARPNAVVRVSIKGA 154 >gi|297579388|ref|ZP_06941316.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae RC385] gi|297536982|gb|EFH75815.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae RC385] Length = 246 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 52/156 (33%), Gaps = 27/156 (17%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT G V+++ + Sbjct: 25 VF--LQGC-----------LFRCKYCHNRDT----WDTHTGREVTVEEIIKEAKSYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGIDWICVSPKAG 138 G +GGE +LQ + +A G ++TNG + ID + Sbjct: 68 NASGGGITCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYVRKFTPVIDEVL----EV 123 Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174 DL + +++ Q + N DF R+ Q Sbjct: 124 TDLVMLDIKQMDDEIHQDLIGVSNKRTLDFARYLHQ 159 >gi|325290637|ref|YP_004266818.1| 4-hydroxyphenylacetate decarboxylase subunit A [Syntrophobotulus glycolicus DSM 8271] gi|324966038|gb|ADY56817.1| 4-hydroxyphenylacetate decarboxylase subunit A [Syntrophobotulus glycolicus DSM 8271] Length = 312 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 48/163 (29%), Gaps = 57/163 (34%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD-----------------RLSAQCRFC 50 E F T G G +F F+GC L + R C C Sbjct: 14 ESFTTHDGPGCRT---TIF--FAGCPLKCDWCANPEAMESKRKILFAEQNCRARDGCSRC 68 Query: 51 ------------------D----TDFVGIQGTK----------GGRYNVDQLADLIEEQW 78 D TD + T+ G Y DQL + + Sbjct: 69 VKACPHGALRSANGALQIDRGICTDCISFHCTEVCHLDAIRLCGKDYTADQLMERL-RID 127 Query: 79 ITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119 EG +GGEPL Q + L+ L + A+ET+ Sbjct: 128 SGSWGEGGGVTFSGGEPLRQAGFLLSLLPILKRENIHTAIETS 170 >gi|224543792|ref|ZP_03684331.1| hypothetical protein CATMIT_03013 [Catenibacterium mitsuokai DSM 15897] gi|224523283|gb|EEF92388.1| hypothetical protein CATMIT_03013 [Catenibacterium mitsuokai DSM 15897] Length = 255 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 25/104 (24%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C+FC DT K + Q D Sbjct: 30 VRFILFLHGCPF-----------RCQFCHNPDT----WASQKFEEWTPQQALDRALRFEP 74 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121 K+G ++GGEPL+Q+D + + G ++T+G Sbjct: 75 YWGKDGG-ITVSGGEPLVQIDFLLEFFKLAKAAGINTCIDTSGA 117 >gi|170769684|ref|ZP_02904137.1| glycyl-radical enzyme activating protein family [Escherichia albertii TW07627] gi|170121492|gb|EDS90423.1| glycyl-radical enzyme activating protein family [Escherichia albertii TW07627] Length = 292 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 61/170 (35%), Gaps = 30/170 (17%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R ++C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRRESKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153 +Q L G A+ET G + + + + DLKI + + V Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDPNQARQVV 188 >gi|260495468|ref|ZP_05815594.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp. 3_1_33] gi|260197005|gb|EEW94526.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp. 3_1_33] Length = 247 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 26/103 (25%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C +C DT K Y +++ E Sbjct: 19 IRFVVFMQGCPL-----------RCLYCHNVDT---WELKDKNYIYTPEEI---FAELNK 61 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 +GGEPL Q + L + K G A++T+G Sbjct: 62 VRAFLTGGITASGGEPLFQASFILELFKLCKKNGIHTALDTSG 104 >gi|241663378|ref|YP_002981738.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Ralstonia pickettii 12D] gi|240865405|gb|ACS63066.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Ralstonia pickettii 12D] Length = 237 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 28/128 (21%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G++A VF +GC +C +C T+ + + + ++ + Sbjct: 35 GQLAAVVFV--AGCP-----------WRCHYC---HNPHLQTRTRTLDWNDVFAFLQRRT 78 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 + V +GGEPL + +P LI+ + G++I + T G +DW+ Sbjct: 79 GLLDA----VVFSGGEPLSEPHLPQLIRDVRALGYKIGLHTGGIYPARLTDVLPQVDWVG 134 Query: 133 VSPKAGCD 140 + K Sbjct: 135 LDIKTSAP 142 >gi|229131444|ref|ZP_04260340.1| hypothetical protein bcere0014_4130 [Bacillus cereus BDRD-ST196] gi|228652028|gb|EEL07969.1| hypothetical protein bcere0014_4130 [Bacillus cereus BDRD-ST196] Length = 243 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D L + + G ++++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLTQLFKKCKEAGIHTTIDSSG 107 >gi|154150498|ref|YP_001404116.1| radical SAM domain-containing protein [Candidatus Methanoregula boonei 6A8] gi|153999050|gb|ABS55473.1| Radical SAM domain protein [Methanoregula boonei 6A8] Length = 391 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 17/108 (15%) Query: 18 GHAG--RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE 75 +G R VF W+ DR + C C + G + ++ I+ Sbjct: 31 AFSGMRRPVVF--------WNLT--DRCNLSCTHCYS-RSAPDSPTQGELSTNEALAFID 79 Query: 76 EQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 + G + TGGEPL++ D+ L +G + A+ TNGT+ Sbjct: 80 DLAAAG---IPLVIFTGGEPLVRPDIWQLAGHCRDKGIKTALSTNGTL 124 >gi|295397845|ref|ZP_06807908.1| pyruvate formate-lyase activating enzyme [Aerococcus viridans ATCC 11563] gi|294973890|gb|EFG49654.1| pyruvate formate-lyase activating enzyme [Aerococcus viridans ATCC 11563] Length = 281 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 54/162 (33%), Gaps = 53/162 (32%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC L +C+FC DT Sbjct: 40 TESFGSVDGPG---------IRFISFMQGCRL-----------RCQFCHNPDT----WNM 75 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAV 116 G +Y +L D + G ++GGEPLLQ++ LI+ G + Sbjct: 76 RGGTQYTPQELFDEAIQYRSFWGNSGG-VTVSGGEPLLQIEF-LIEYFKICKAHGVHTTI 133 Query: 117 ETNG---TIEPPQG--------------IDWICVSPKAGCDL 141 +T G T+E P D + PK L Sbjct: 134 DTCGAPFTLEEPFRSQFEELMKYTDLFLFDIKHIDPKGHVKL 175 >gi|255525040|ref|ZP_05391986.1| pyruvate formate-lyase activating enzyme [Clostridium carboxidivorans P7] gi|296187392|ref|ZP_06855787.1| pyruvate formate-lyase 1-activating enzyme [Clostridium carboxidivorans P7] gi|255511296|gb|EET87590.1| pyruvate formate-lyase activating enzyme [Clostridium carboxidivorans P7] gi|296047914|gb|EFG87353.1| pyruvate formate-lyase 1-activating enzyme [Clostridium carboxidivorans P7] Length = 264 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 33/128 (25%) Query: 8 EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F ++ G G +F GC++ +C+FC DT Sbjct: 24 ESFGSVDGPGIRFV----IF--LKGCHM-----------RCQFCHNPDT----WDMDGAE 62 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETNG 120 VD+L + K+G ++GGEPLLQ+D LI+ +G + ++T+G Sbjct: 63 TKTVDELLSQALKYKTY-WKKGGGITVSGGEPLLQIDF-LIKFFTKAKAKGVHVTLDTSG 120 Query: 121 ---TIEPP 125 T E P Sbjct: 121 NPFTREQP 128 >gi|51245707|ref|YP_065591.1| coenzyme PQQ synthesis protein [Desulfotalea psychrophila LSv54] gi|50876744|emb|CAG36584.1| related to coenzyme PQQ synthesis protein [Desulfotalea psychrophila LSv54] Length = 354 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 6/78 (7%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102 +C +C + + ++ D+I++ G + + VL GGEPLL Sbjct: 40 DLRCVYC---YAASGVPLKNELTLVEIKDIIDQAIGLGAQ--KIIVLGGGEPLLYPHLFE 94 Query: 103 LIQALNKRGFEIAVETNG 120 +I+ + +G + + TNG Sbjct: 95 VIEYIRNKGLAVDLFTNG 112 >gi|255323614|ref|ZP_05364744.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Campylobacter showae RM3277] gi|255299328|gb|EET78615.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Campylobacter showae RM3277] Length = 228 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 28/149 (18%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 F+GCN+ +C +C + T G+ + + ++++ Sbjct: 29 FAGCNM-----------RCAYC---YNVSIVTGAGQISRAEFIKFLDKRKGKLSG----V 70 Query: 89 VLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGCD 140 V +GGE L +PL + RGF + V+TNG+ G ID+I + KA + Sbjct: 71 VFSGGECTLSPAFLPLASEVKSRGFSLKVDTNGSNLTALGQAISLNLIDYIALDFKAPKE 130 Query: 141 --LKIKGGQELKLVFPQVNVSPENYIGFD 167 LK+ G K + + + F+ Sbjct: 131 KFLKVTGSNLYKNFLQTLEFLLQTDLKFE 159 >gi|261415451|ref|YP_003249134.1| pyruvate formate-lyase activating enzyme [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371907|gb|ACX74652.1| pyruvate formate-lyase activating enzyme [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326244|gb|ADL25445.1| pyruvate formate-lyase activating enzyme [Fibrobacter succinogenes subsp. succinogenes S85] Length = 258 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 48/142 (33%), Gaps = 35/142 (24%) Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDF 54 M L I E F ++ G G RF GC + +C+FC Sbjct: 1 MTLGRINKLETFGSVDGPG---------IRFVVFTQGCPM-----------RCKFCHNPE 40 Query: 55 VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY-------CVLTGGEPLLQVD--VPLIQ 105 GTK + ++ E + + ++GGEPL Q+D + + Sbjct: 41 TWDFGTKSANGTANGSFEISAEDLLKKALRYKPYWGTDGGITVSGGEPLAQIDFMIEFFE 100 Query: 106 ALNKRGFEIAVETNGTIEPPQG 127 A G V+T G P G Sbjct: 101 AAKSAGVHTCVDTCGVTFRPTG 122 >gi|15641871|ref|NP_231503.1| pyruvate formate lyase-activating enzyme 1 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587313|ref|ZP_01677085.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 2740-80] gi|121727114|ref|ZP_01680288.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V52] gi|147674120|ref|YP_001217403.1| pyruvate formate lyase-activating enzyme 1 [Vibrio cholerae O395] gi|153213085|ref|ZP_01948623.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 1587] gi|153818851|ref|ZP_01971518.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae NCTC 8457] gi|153823101|ref|ZP_01975768.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae B33] gi|153825235|ref|ZP_01977902.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-2] gi|153830545|ref|ZP_01983212.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 623-39] gi|183179507|ref|ZP_02957718.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-3] gi|227081998|ref|YP_002810549.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae M66-2] gi|229508034|ref|ZP_04397539.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae BX 330286] gi|229511727|ref|ZP_04401206.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae B33] gi|229515249|ref|ZP_04404709.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TMA 21] gi|229518865|ref|ZP_04408308.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC9] gi|229520329|ref|ZP_04409755.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TM 11079-80] gi|229523888|ref|ZP_04413293.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae bv. albensis VL426] gi|229529108|ref|ZP_04418498.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae 12129(1)] gi|229607581|ref|YP_002878229.1| pyruvate formate lyase-activating enzyme 1 [Vibrio cholerae MJ-1236] gi|254226038|ref|ZP_04919637.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V51] gi|254286774|ref|ZP_04961728.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae AM-19226] gi|254848956|ref|ZP_05238306.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MO10] gi|255745371|ref|ZP_05419320.1| pyruvate formate-lyase activating enzyme [Vibrio cholera CIRS 101] gi|262153526|ref|ZP_06028655.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae INDRE 91/1] gi|262167426|ref|ZP_06035133.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC27] gi|298498092|ref|ZP_07007899.1| pyruvate formate-lyase 1-activating enzyme [Vibrio cholerae MAK 757] gi|9656400|gb|AAF95017.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548473|gb|EAX58531.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 2740-80] gi|121630492|gb|EAX62884.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V52] gi|124116132|gb|EAY34952.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 1587] gi|125621421|gb|EAZ49756.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V51] gi|126510579|gb|EAZ73173.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae NCTC 8457] gi|126519392|gb|EAZ76615.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae B33] gi|146316003|gb|ABQ20542.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae O395] gi|148873975|gb|EDL72110.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 623-39] gi|149741214|gb|EDM55265.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-2] gi|150423201|gb|EDN15148.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae AM-19226] gi|183012918|gb|EDT88218.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-3] gi|227009886|gb|ACP06098.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae M66-2] gi|227013767|gb|ACP09977.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae O395] gi|229332882|gb|EEN98368.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae 12129(1)] gi|229337469|gb|EEO02486.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae bv. albensis VL426] gi|229342695|gb|EEO07687.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TM 11079-80] gi|229343554|gb|EEO08529.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC9] gi|229347954|gb|EEO12913.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TMA 21] gi|229351692|gb|EEO16633.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae B33] gi|229355539|gb|EEO20460.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae BX 330286] gi|229370236|gb|ACQ60659.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae MJ-1236] gi|254844661|gb|EET23075.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MO10] gi|255737201|gb|EET92597.1| pyruvate formate-lyase activating enzyme [Vibrio cholera CIRS 101] gi|262024123|gb|EEY42817.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC27] gi|262030653|gb|EEY49288.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae INDRE 91/1] gi|297542425|gb|EFH78475.1| pyruvate formate-lyase 1-activating enzyme [Vibrio cholerae MAK 757] gi|327484419|gb|AEA78826.1| Pyruvate formate-lyase activating enzyme [Vibrio cholerae LMA3894-4] Length = 246 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 52/156 (33%), Gaps = 27/156 (17%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT G V+++ + Sbjct: 25 VF--LQGC-----------LFRCKYCHNRDT----WDTHTGREVTVEEIIKEAKSYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGIDWICVSPKAG 138 G +GGE +LQ + +A G ++TNG + ID + Sbjct: 68 NASGGGITCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYVRKFTPVIDEVL----EV 123 Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174 DL + +++ Q + N DF R+ Q Sbjct: 124 TDLVMLDIKQMDDEIHQDLIGVSNKRTLDFARYLHQ 159 >gi|299067006|emb|CBJ38201.1| Molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum CMR15] Length = 373 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 69/170 (40%), Gaps = 27/170 (15%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ +Q + + +++ ++ G ++ R LTGGE Sbjct: 52 DRCNFRCIYCMPKDVFDKDYRFLQHS--ELLSFEEIERMVRLFIEHGVEKIR---LTGGE 106 Query: 95 PLLQVDVP-LIQALNKRG------FEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ D+ L++ L + ++ + TNG + G+ + VS A D Sbjct: 107 PLLRKDIERLVEMLARLNTRDGKPLDLTLTTNGALLARKAQALKDAGLTRVTVSLDAIDD 166 Query: 141 LKIKGGQELKLVFPQV--NVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 + ++ +V + +G + ++ G ++ LA Sbjct: 167 ATFRRMNDVDFAVAEVLHGIEVAQRVGLAPLKINMVVKKGDNDDQIVPLA 216 >gi|24211989|sp|Q8Y0K4|MOAA_RALSO RecName: Full=Molybdenum cofactor biosynthesis protein A Length = 345 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 69/170 (40%), Gaps = 27/170 (15%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ +Q + + +++ ++ G ++ R LTGGE Sbjct: 24 DRCNFRCIYCMPKDVFDKDYRFLQHS--ELLSFEEIERMVRLFIEHGVEKIR---LTGGE 78 Query: 95 PLLQVDVP-LIQALNKRG------FEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ D+ L++ L + ++ + TNG + G+ + VS A D Sbjct: 79 PLLRKDIERLVEMLARLNTRDGKPLDLTLTTNGALLARKAQALKDAGLTRVTVSLDAIDD 138 Query: 141 LKIKGGQELKLVFPQV--NVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 + ++ +V + +G + ++ G ++ LA Sbjct: 139 ATFRRMNDVDFAVAEVLHGIEVAQRVGLAPLKINMVVKKGDNDDQIVPLA 188 >gi|17545758|ref|NP_519160.1| molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum GMI1000] gi|17428052|emb|CAD14741.1| probable molybdenum cofactor biosynthesis protein a [Ralstonia solanacearum GMI1000] Length = 373 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 69/170 (40%), Gaps = 27/170 (15%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ +Q + + +++ ++ G ++ R LTGGE Sbjct: 52 DRCNFRCIYCMPKDVFDKDYRFLQHS--ELLSFEEIERMVRLFIEHGVEKIR---LTGGE 106 Query: 95 PLLQVDVP-LIQALNKRG------FEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ D+ L++ L + ++ + TNG + G+ + VS A D Sbjct: 107 PLLRKDIERLVEMLARLNTRDGKPLDLTLTTNGALLARKAQALKDAGLTRVTVSLDAIDD 166 Query: 141 LKIKGGQELKLVFPQV--NVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 + ++ +V + +G + ++ G ++ LA Sbjct: 167 ATFRRMNDVDFAVAEVLHGIEVAQRVGLAPLKINMVVKKGDNDDQIVPLA 216 >gi|307823974|ref|ZP_07654202.1| Radical SAM domain protein [Methylobacter tundripaludum SV96] gi|307735268|gb|EFO06117.1| Radical SAM domain protein [Methylobacter tundripaludum SV96] Length = 378 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 6/100 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + R + C+ C T + ++ ++++ + +L+G Sbjct: 26 PVVIWNLIRRCNLTCKHCYT--TSTDINFPNELSTPEIYTVMDDLKA---FKVPVLILSG 80 Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GEPLL D+ + + GF +A+ TNGT ID I Sbjct: 81 GEPLLHPDIFNISRRAKDMGFYVALSTNGTKISADNIDEI 120 >gi|307691541|ref|ZP_07633778.1| pyruvate formate-lyase activating enzyme [Ruminococcaceae bacterium D16] Length = 242 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 23/106 (21%) Query: 21 GRVAV-FCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEE 76 G AV F GC L +C +C DT + G + L + Sbjct: 18 GVRAVVF--LQGCPL-----------RCLYCHNPDTQ----TFSGGQETTPEALVKRLLR 60 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 E G +GGEPL Q D ++ L G ++T+G Sbjct: 61 FRPYFESSGGGVTFSGGEPLGQPDFLLACLKLLKAEGVHTCIDTSG 106 >gi|296877199|ref|ZP_06901239.1| pyruvate formate-lyase activating enzyme [Streptococcus parasanguinis ATCC 15912] gi|296431719|gb|EFH17526.1| pyruvate formate-lyase activating enzyme [Streptococcus parasanguinis ATCC 15912] Length = 258 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 61/169 (36%), Gaps = 33/169 (19%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFC--------------DTDFVGIQGTKGGRYNVDQ 69 VF GC L +C +C D GT G VD+ Sbjct: 25 TVF--LKGCPL-----------RCPWCSNPESQRMNPEPMLD-AVTKAPGTTGQEKTVDE 70 Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTIEPPQG 127 + D + + E+ G L+GGE Q + L++A +RG A+ET +E + Sbjct: 71 IIDEVMKDIDFYEESGGGMTLSGGEIFAQFEFAKALLKAAKERGLHTAIETTAFVEHEKF 130 Query: 128 IDWICVSPKAGCDLKIKGGQELKL---VFPQVNVSPENYIGFDFERFSL 173 ID I DLK + K V + + +Y + ++ L Sbjct: 131 IDLIQYVDFIYTDLKHYNSLKHKKKVGVHNSLIIENIHYAFKEKKKIVL 179 >gi|288920502|ref|ZP_06414809.1| hopanoid biosynthesis associated radical SAM protein HpnH [Frankia sp. EUN1f] gi|288348073|gb|EFC82343.1| hopanoid biosynthesis associated radical SAM protein HpnH [Frankia sp. EUN1f] Length = 332 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 8/86 (9%) Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 R VDQ +E L GGEPL+ + +++ L KR I + TN + Sbjct: 58 RMPVDQALAAADECG------APVVCLAGGEPLMHPQIEQIVEGLVKRKKFIYLCTN-AL 110 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQE 148 P+ ID + SP + I G +E Sbjct: 111 LLPRKIDKLKPSPYLSLAVHIDGLEE 136 >gi|119871571|ref|YP_929578.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM 4184] gi|119672979|gb|ABL87235.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184] Length = 389 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 18/96 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C ++ + L+++ E + T Sbjct: 58 CNL-----------KCLHC---YIDAGAEDPRELTTAEALALVDQM---AEVGVPLILFT 100 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEPPQ 126 GGEPL+ Q + + G ++ + TNGT+ P+ Sbjct: 101 GGEPLVRQDFFEIAERARDAGIKLVLSTNGTLITPE 136 >gi|20808263|ref|NP_623434.1| pyruvate-formate lyase-activating enzyme [Thermoanaerobacter tengcongensis MB4] gi|254479441|ref|ZP_05092770.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Carboxydibrachium pacificum DSM 12653] gi|20516862|gb|AAM25038.1| Pyruvate-formate lyase-activating enzyme [Thermoanaerobacter tengcongensis MB4] gi|214034626|gb|EEB75371.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Carboxydibrachium pacificum DSM 12653] Length = 228 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 63/158 (39%), Gaps = 30/158 (18%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 VF SGCN +C +C ++ + + D ++++ E Sbjct: 19 ATVFV--SGCNF-----------KCPYCHNSYLIQMREGIK--SEKEFFDYLKKRANLIE 63 Query: 83 KEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPP-------QGIDWICVS 134 +TGGEP L + I+ + FE+ ++TNG+ +D+I + Sbjct: 64 G----VCITGGEPTLWKGLKDFIKNIKDLNFEVKLDTNGSRPQVLESLLEEGLLDYIAMD 119 Query: 135 ---PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169 P D+ +K ++++ + V + ++ I ++F Sbjct: 120 IKAPIEKYDMFLKNEKDIENIKKSVELIKDSDINYEFR 157 >gi|255655113|ref|ZP_05400522.1| glycerol dehydratase activator [Clostridium difficile QCD-23m63] gi|296451101|ref|ZP_06892843.1| pyruvate formate-lyase activating enzyme [Clostridium difficile NAP08] gi|296880546|ref|ZP_06904508.1| pyruvate formate-lyase activating enzyme [Clostridium difficile NAP07] gi|296260108|gb|EFH06961.1| pyruvate formate-lyase activating enzyme [Clostridium difficile NAP08] gi|296428500|gb|EFH14385.1| pyruvate formate-lyase activating enzyme [Clostridium difficile NAP07] Length = 300 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 8/86 (9%) Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +V+++ +E+ +I + +GGEP LQ+D L+ +G IA+ET G Sbjct: 103 EEMSVEEIVKEVEKDFIFFFESNGGITFSGGEPTLQIDFLRELVDIFYNKGINIAIETCG 162 Query: 121 ------TIEPPQGIDWICVSPKAGCD 140 + ID I V K+ D Sbjct: 163 YFDWNKVNDVFDKIDHIFVDIKSMDD 188 >gi|257880503|ref|ZP_05660156.1| glycerol dehydratase activator [Enterococcus faecium 1,230,933] gi|257814731|gb|EEV43489.1| glycerol dehydratase activator [Enterococcus faecium 1,230,933] Length = 276 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 17/105 (16%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEE 76 AG V GC L +C +C ++ I+ G +++ D IE+ Sbjct: 24 AGLRTV-VYLKGCPL-----------RCAWCSIPESQSKQIEKGFGQTMTAEEVMDEIEK 71 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 + ++GGE L+Q D ++Q G +ET+ Sbjct: 72 DAVFYFHSDGGVTISGGEALVQADFAKEILQKSKYIGINTVLETS 116 >gi|167570605|ref|ZP_02363479.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia oklahomensis C6786] Length = 239 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 26/130 (20%) Query: 17 GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 G A VF GC +C +C + + + L + Sbjct: 26 GQFA--AVVFV--QGCP-----------WRCGYCHNPHLQARSQPAE-IEWNALLAFLAR 69 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE-----PPQGIDW 130 + + V +GGEP + + I + + GF++ + + GT +DW Sbjct: 70 RIGLIDA----VVFSGGEPSIDPALAASIDDVKRLGFKVGMHSAGTHPRRLAHLLPSLDW 125 Query: 131 ICVSPKAGCD 140 I + KA D Sbjct: 126 IGLDVKAPFD 135 >gi|167563434|ref|ZP_02356350.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia oklahomensis EO147] Length = 239 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 26/130 (20%) Query: 17 GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 G A VF GC +C +C + + + L + Sbjct: 26 GQFA--AVVFV--QGCP-----------WRCGYCHNPHLQARSQPAE-IEWNALLAFLAR 69 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE-----PPQGIDW 130 + + V +GGEP + + I + + GF++ + + GT +DW Sbjct: 70 RIGLIDA----VVFSGGEPSIDPALAASIDDVKRLGFKVGMHSAGTHPRRLAHLLPSLDW 125 Query: 131 ICVSPKAGCD 140 I + KA D Sbjct: 126 IGLDVKAPFD 135 >gi|256026676|ref|ZP_05440510.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D11] gi|289764672|ref|ZP_06524050.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D11] gi|289716227|gb|EFD80239.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D11] Length = 244 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 26/103 (25%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C +C DT K Y +++ E Sbjct: 19 IRFVVFMQGCPL-----------RCLYCHNVDT---WELKDKNYIYTPEEI---FAELNK 61 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 +GGEPL Q + L + K G A++T+G Sbjct: 62 VRAFLTGGITASGGEPLFQASFILELFKLCKKNGIHTALDTSG 104 >gi|254166872|ref|ZP_04873726.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Aciduliprofundum boonei T469] gi|289596191|ref|YP_003482887.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Aciduliprofundum boonei T469] gi|197624482|gb|EDY37043.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Aciduliprofundum boonei T469] gi|289533978|gb|ADD08325.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Aciduliprofundum boonei T469] Length = 227 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 25/127 (19%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE--EQWI 79 VF GCN +C FC ++ + + D + + I+ + WI Sbjct: 19 VATVF--TYGCNF-----------RCPFC-HNYTLVTEPPTALLSEDNVIEEIKGLKGWI 64 Query: 80 TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAG 138 G +TGGEP + D+ ++ L++ + ++TNGT EP I+ I Sbjct: 65 DG------ICITGGEPTIHKDLKDFVKKLSEIA-PVKLDTNGT-EPSTLIEVIPYISYVA 116 Query: 139 CDLKIKG 145 D+K Sbjct: 117 MDIKAPK 123 >gi|153939886|ref|YP_001392565.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum F str. Langeland] gi|152935782|gb|ABS41280.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum F str. Langeland] gi|295320551|gb|ADG00929.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum F str. 230613] Length = 232 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 23/101 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G + D++ + Sbjct: 22 VF--FQGC-----------QLRCVYCHNPDT----WDFNAGIEISSDEVLKKVLRYKPY- 63 Query: 82 EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 K+ +GGEPL+Q + +++ +G ++T+G Sbjct: 64 FKQVGGITCSGGEPLMQPEFLLEILKKCKNQGIHTVLDTSG 104 >gi|269217507|ref|ZP_06161361.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269213128|gb|EEZ79468.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 265 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 26/128 (20%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G++A VF GC L C +C + + G Q+ L+ + Sbjct: 5 GKLAAVVF--LQGCPL-----------ACPYC-QNEAILDPKVPGAVPWSQVEALLARRA 50 Query: 79 ITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 + VLTGGE L Q V + + + GF + + T G DW+ Sbjct: 51 GLLDG----VVLTGGEALRQAGVVDAARRVREMGFGVGLHTAGAYPRALAKILPHTDWVG 106 Query: 133 VSPKAGCD 140 + KA D Sbjct: 107 IDVKAMPD 114 >gi|222528368|ref|YP_002572250.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Caldicellulosiruptor bescii DSM 6725] gi|222455215|gb|ACM59477.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Caldicellulosiruptor bescii DSM 6725] Length = 231 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 28/152 (18%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 F GCN C FC + G++ D + E + Sbjct: 23 FGGCNF-----------SCPFC---YNSELVNFKGKFMDDSI---FFEYLDKRKGIVDAV 65 Query: 89 VLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGC 139 +TGGEP L I+ + ++ + ++TNG+ +D++ + KA Sbjct: 66 CITGGEPTLNEEYLTEFIKKIKQKNLLVKLDTNGSKPEVLQRLLDAGLLDYVAMDVKAPL 125 Query: 140 D--LKIKGGQELKLVFPQVNVSPENYIGFDFE 169 + +I G ++ + + + + I ++F Sbjct: 126 EKYPQITGFSDVDKIRRSIEILKNSNIDYEFR 157 >gi|309782387|ref|ZP_07677111.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Ralstonia sp. 5_7_47FAA] gi|308918724|gb|EFP64397.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Ralstonia sp. 5_7_47FAA] Length = 237 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 28/128 (21%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G++A VF +GC +C +C T+ + + + ++ + Sbjct: 35 GQLAAVVFV--AGCP-----------WRCHYC---HNPHLQTRTRTLDWNDVFAFLQRRT 78 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 + V +GGEPL + +P LI+ + G++I + T G +DW+ Sbjct: 79 GLLDA----VVFSGGEPLSEPHLPQLIRDVRALGYKIGLHTGGIYPARLTDVLPQLDWVG 134 Query: 133 VSPKAGCD 140 + K Sbjct: 135 LDIKTSAP 142 >gi|295677201|ref|YP_003605725.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. CCGE1002] gi|295437044|gb|ADG16214.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. CCGE1002] Length = 369 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 25/136 (18%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + + +++ L ++ G ++ R LTGGE Sbjct: 45 DRCNFRCVYCMPRAVFDKDYAFLPHS--ALLSFEEIERLAQQFVAHGVEKIR---LTGGE 99 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ ++ LI L + R ++ + TNG++ G+ + VS A D Sbjct: 100 PLLRKNLEFLIDRLARLTTPAGRPLDLTLTTNGSLLARKARSLKDAGLTRVTVSLDALDD 159 Query: 141 LKIKGGQELKLVFPQV 156 + + V Sbjct: 160 ALFRRMNDADFAVADV 175 >gi|255654806|ref|ZP_05400215.1| pyruvate formate-lyase activating enzyme [Clostridium difficile QCD-23m63] gi|296449550|ref|ZP_06891327.1| pyruvate formate-lyase activating enzyme [Clostridium difficile NAP08] gi|296878127|ref|ZP_06902142.1| pyruvate formate-lyase activating enzyme [Clostridium difficile NAP07] gi|296261614|gb|EFH08432.1| pyruvate formate-lyase activating enzyme [Clostridium difficile NAP08] gi|296430880|gb|EFH16712.1| pyruvate formate-lyase activating enzyme [Clostridium difficile NAP07] Length = 244 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 34/131 (25%) Query: 8 EIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F T+ G G R F GC L +C++C DT Sbjct: 10 ETFGTVDGPG---------IRYILFFQGCPL-----------RCKYCHNRDT----WDIK 45 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G Y VD++ + + +GGE LQ + L + + ++T Sbjct: 46 SGKEYTVDEIITDALKYTSFMKFSDGGITASGGESTLQPEFLSELFKKAKENDIHTCLDT 105 Query: 119 NGTIEPPQGID 129 +G ++ + ID Sbjct: 106 SGFVDI-ETID 115 >gi|152991509|ref|YP_001357231.1| hypothetical protein NIS_1769 [Nitratiruptor sp. SB155-2] gi|151423370|dbj|BAF70874.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 227 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 20/102 (19%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 A+F +GCN++ C +C RY + + ++++ E Sbjct: 24 AAIFW-LAGCNMY-----------CPYC---HNAEIVHGKNRYPFQKALEFLQKRRGLLE 68 Query: 83 KEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 V++GGEP L ++ + ++ + GF I ++TNG+ Sbjct: 69 G----VVISGGEPTLHPELQTICSSIKELGFLIKLDTNGSRP 106 >gi|237745221|ref|ZP_04575702.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 7_1] gi|229432450|gb|EEO42662.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 7_1] Length = 242 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 26/103 (25%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C +C DT K Y +++ E Sbjct: 19 IRFVVFMQGCPL-----------RCLYCHNVDT---WELKDKNYIYTPEEI---FAELNK 61 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 +GGEPL Q + L + K G A++T+G Sbjct: 62 VRAFLTGGITASGGEPLFQASFILELFKLCKKNGIHTALDTSG 104 >gi|290969198|ref|ZP_06560723.1| putative pyruvate formate-lyase-activating enzyme [Megasphaera genomosp. type_1 str. 28L] gi|290780704|gb|EFD93307.1| putative pyruvate formate-lyase-activating enzyme [Megasphaera genomosp. type_1 str. 28L] Length = 308 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 4/90 (4%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 RE C T F G V Q+ + +E++ G L+G Sbjct: 81 PYKLLREHCTACTDCVQ--TCFANALTVIGEDMTVAQVMEKLEKEDTMFRYSGGGVTLSG 138 Query: 93 GEPLLQVD--VPLIQALNKRGFEIAVETNG 120 GEPL Q D + + +A G+ A+ET G Sbjct: 139 GEPLTQADFAMEIFKACKANGWNTAIETTG 168 >gi|257883510|ref|ZP_05663163.1| glycerol dehydratase activator [Enterococcus faecium 1,231,502] gi|257891910|ref|ZP_05671563.1| glycerol dehydratase activator [Enterococcus faecium 1,231,410] gi|257894775|ref|ZP_05674428.1| glycerol dehydratase activator [Enterococcus faecium 1,231,408] gi|260558188|ref|ZP_05830385.1| predicted protein [Enterococcus faecium C68] gi|261206565|ref|ZP_05921264.1| predicted protein [Enterococcus faecium TC 6] gi|294620265|ref|ZP_06699590.1| BssD [Enterococcus faecium E1679] gi|314996175|ref|ZP_07861240.1| glycyl-radical enzyme activating family protein [Enterococcus faecium TX0133a01] gi|257819168|gb|EEV46496.1| glycerol dehydratase activator [Enterococcus faecium 1,231,502] gi|257828270|gb|EEV54896.1| glycerol dehydratase activator [Enterococcus faecium 1,231,410] gi|257831154|gb|EEV57761.1| glycerol dehydratase activator [Enterococcus faecium 1,231,408] gi|260075770|gb|EEW64075.1| predicted protein [Enterococcus faecium C68] gi|260079182|gb|EEW66874.1| predicted protein [Enterococcus faecium TC 6] gi|291593506|gb|EFF25055.1| BssD [Enterococcus faecium E1679] gi|313589639|gb|EFR68484.1| glycyl-radical enzyme activating family protein [Enterococcus faecium TX0133a01] Length = 323 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 17/105 (16%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEE 76 AG V GC L +C +C ++ I+ G +++ D IE+ Sbjct: 17 AGLRTV-VYLKGCPL-----------RCAWCSIPESQSKQIEKGFGQTMTAEEVMDEIEK 64 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 + ++GGE L+Q D ++Q G +ET+ Sbjct: 65 DAVFYFHSDGGVTISGGEALVQADFAKEILQKSKYIGINTVLETS 109 >gi|194433239|ref|ZP_03065520.1| glycyl-radical enzyme activating protein family [Shigella dysenteriae 1012] gi|194418523|gb|EDX34611.1| glycyl-radical enzyme activating protein family [Shigella dysenteriae 1012] gi|332085291|gb|EGI90465.1| glycyl-radical enzyme activating family protein [Shigella dysenteriae 155-74] Length = 279 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 49/216 (22%), Positives = 74/216 (34%), Gaps = 36/216 (16%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQVNVS 159 +Q L G A+ET G + + + + DLKI + +K+ P+V + Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQAWDVVKMNLPRVLEN 185 Query: 160 PENYIGFDFERFSLQPMDGPF--LEENTNLAISYCF 193 + P+ F EN A+ Sbjct: 186 LRLLVSEGVNVIPRLPLIPSFTLSRENMQQALDVLI 221 >gi|187731448|ref|YP_001882647.1| pyruvate formate lyase II activase [Shigella boydii CDC 3083-94] gi|187428440|gb|ACD07714.1| glycyl-radical enzyme activating protein family [Shigella boydii CDC 3083-94] Length = 292 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 139 LQRLRLWGVSCAIETAGDAPVSKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195 >gi|312137064|ref|YP_004004401.1| radical sam domain protein [Methanothermus fervidus DSM 2088] gi|311224783|gb|ADP77639.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088] Length = 274 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 25/126 (19%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE-GRY 87 SGCN C C F + G V +L L+E+ + + + Sbjct: 24 LSGCNF-----------NCLGC---FSIAKDIVGKPMTVKELVKLVEDSSRSYYGDLPKE 69 Query: 88 CVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD---LK 142 ++TGGEP L LI +L +I +E+NG + + +D + KAG D L Sbjct: 70 IIITGGEPTLNKKYLKKLISSLRSS--QIIIESNGYLLDDKYVDELI---KAGLDGIMLD 124 Query: 143 IKGGQE 148 +K E Sbjct: 125 LKAFDE 130 >gi|294677721|ref|YP_003578336.1| [pyruvate formate-lyase]-activating enzyme [Rhodobacter capsulatus SB 1003] gi|294476541|gb|ADE85929.1| [pyruvate formate-lyase]-activating enzyme-1 [Rhodobacter capsulatus SB 1003] Length = 305 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 9/98 (9%) Query: 32 CN---LWSGREQDRLSAQCRFC-D-TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKE 84 C L A+C C D T + K G R +V ++ + + I + Sbjct: 71 CPVGALSRDNPGFVDRAKCIRCGDCTKVCPTEALKRAGRRMSVAEVMQELRKDAIHYRRS 130 Query: 85 GRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG 120 G L+GGEPLLQ L+ A +++G+ A+ET G Sbjct: 131 GGGVTLSGGEPLLQAAFAKQLLMACHEQGWNTAMETTG 168 >gi|289578146|ref|YP_003476773.1| radical SAM protein [Thermoanaerobacter italicus Ab9] gi|289527859|gb|ADD02211.1| Radical SAM domain protein [Thermoanaerobacter italicus Ab9] Length = 304 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 17/96 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C + + G++ ++ D+I E G +L Sbjct: 15 CNL-----------DCIYC---YKKVIGSRNDDILPEKAIDIIVEN--LGSNPAVLVILE 58 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ 126 GGEPLL + + L + + + TNGT+ P+ Sbjct: 59 GGEPLLHPRFIEIFYKLKEYSVAVDILTNGTLFTPE 94 >gi|55378104|ref|YP_135954.1| molybdenum cofactor biosynthesis protein A [Haloarcula marismortui ATCC 43049] gi|55230829|gb|AAV46248.1| molybdenum cofactor biosynthesis protein A [Haloarcula marismortui ATCC 43049] Length = 360 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 11/97 (11%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + C +C DT G + D + +E + E TGGE Sbjct: 19 DRCNFDCVYCHNEGLGDTR--GPMEAQDDELTADTIVAFLE---VAAEFGVDSVKFTGGE 73 Query: 95 PLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 P+L+ D+ I E+++ TNGT P + D + Sbjct: 74 PMLREDLEEIVRRAPDEMEVSMTTNGTFLPGRAPDLV 110 >gi|269792248|ref|YP_003317152.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099883|gb|ACZ18870.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 227 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 45/130 (34%), Gaps = 33/130 (25%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 ++F +GCNL +C FC V D E Sbjct: 22 CASLF--TAGCNL-----------RCPFC---------HNPELVPVPVAGDGPEAFLRVV 59 Query: 82 EKEGRY---CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG-------IDW 130 E + ++GGEP + + L+ + G ++ ++TNGT +D+ Sbjct: 60 EGRRAFLDGVCISGGEPCMHRGLGELMARIRSMGLKVKLDTNGTYPEVLQDLLSRGLVDF 119 Query: 131 ICVSPKAGCD 140 + + KA D Sbjct: 120 VALDVKAPWD 129 >gi|257457268|ref|ZP_05622439.1| pyruvate formate-lyase 1-activating enzyme [Treponema vincentii ATCC 35580] gi|257445190|gb|EEV20262.1| pyruvate formate-lyase 1-activating enzyme [Treponema vincentii ATCC 35580] Length = 245 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 37/118 (31%), Gaps = 25/118 (21%) Query: 8 EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66 E F T+ G G VF GC L C CDT + Sbjct: 8 ETFGTVDGPGLRFV----VF--LQGCPLRCQY--------CHNCDT------WERKDARI 47 Query: 67 VDQLADLIEEQWITGEKE--GRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +D A E +TGGEPL Q + L + + A +T+G Sbjct: 48 IDTAAQTFERIRRYKHYYLFAGGVTVTGGEPLGQPEYVKNLFELCKQESLHTAADTSG 105 >gi|149920733|ref|ZP_01909197.1| pyruvate formate-lyase-activating enzyme, putative [Plesiocystis pacifica SIR-1] gi|149818386|gb|EDM77837.1| pyruvate formate-lyase-activating enzyme, putative [Plesiocystis pacifica SIR-1] Length = 318 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 33/101 (32%), Gaps = 9/101 (8%) Query: 32 CN---LWSGREQDRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 C L G E ++C C D G + D L + E Sbjct: 69 CPEGALGLGVEGRVDWSKCTGCGACVDACPAQALTQVGAHVDADALLTTLLRDRPFFESS 128 Query: 85 GRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 G +GGEP+L + L+ L + G +ET G Sbjct: 129 GGGVTFSGGEPVLHEAFLLELLPRLGEAGISRCIETAGAYP 169 >gi|331655650|ref|ZP_08356642.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme) (Formate-C-acetyltransferase-activating enzyme 2) [Escherichia coli M718] gi|331046751|gb|EGI18836.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme) (Formate-C-acetyltransferase-activating enzyme 2) [Escherichia coli M718] Length = 315 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 47 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 101 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 102 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRSSGGGVTLSGGEVLMQAEFATRF 161 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 162 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 218 >gi|170727228|ref|YP_001761254.1| pyruvate formate lyase-activating enzyme 1 [Shewanella woodyi ATCC 51908] gi|169812575|gb|ACA87159.1| pyruvate formate-lyase activating enzyme [Shewanella woodyi ATCC 51908] Length = 246 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 33/122 (27%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F T+ G G RF GC +C++C DT Sbjct: 11 ESFGTVDGPG---------IRFITFMQGC-----------LMRCQYCHNRDT----WDLH 46 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G V++L I E G +GGE +LQ + L +A K G ++T Sbjct: 47 GGKDIEVEELMSQIISYRPFLESSGGGVTASGGEAILQAEFVSALFEACKKEGIHTCLDT 106 Query: 119 NG 120 NG Sbjct: 107 NG 108 >gi|323974240|gb|EGB69370.1| glycyl-radical enzyme activating protein family protein [Escherichia coli TW10509] Length = 292 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRASGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNG 120 +Q L G A+ET G Sbjct: 139 LQRLRLWGVSCAIETAG 155 >gi|268326277|emb|CBH39865.1| conserved hypothetical protein, radical SAM superfamily [uncultured archaeon] Length = 395 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C ++ LI++ + R V T Sbjct: 85 CNL-----------DCIHC---HAFGGEASYDELTEEEGRALIDQ---IAALDIRSFVFT 127 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ D+ LI GF + + TNGT+ Sbjct: 128 GGEPLLREDLFDLIAYAKSIGFSVFIATNGTL 159 >gi|268325167|emb|CBH38755.1| conserved hypothetical protein, radical SAM superfamily [uncultured archaeon] Length = 395 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C ++ LI++ + R V T Sbjct: 85 CNL-----------DCIHC---HAFGGEASYDELTEEEGRALIDQ---IAALDIRSFVFT 127 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ D+ LI GF + + TNGT+ Sbjct: 128 GGEPLLREDLFDLIAYAKSIGFSVFIATNGTL 159 >gi|91793759|ref|YP_563410.1| pyruvate formate lyase-activating enzyme 1 [Shewanella denitrificans OS217] gi|91715761|gb|ABE55687.1| Pyruvate formate-lyase activating [Shewanella denitrificans OS217] Length = 245 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 45/131 (34%), Gaps = 35/131 (26%) Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---D 51 M L I E F T+ G G RF GC +C++C D Sbjct: 1 MTLGRIHSTESFGTVDGPG---------IRFIAFMQGC-----------LMRCQYCHNRD 40 Query: 52 TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNK 109 + G R +V +L I + + +GGE +LQ + L +A Sbjct: 41 S----WDLDGGTRVSVAELMAKIIDYKPFLDASNGGVTASGGEAILQAEFVAELFKACKD 96 Query: 110 RGFEIAVETNG 120 ++TNG Sbjct: 97 NHIHTCLDTNG 107 >gi|323964310|gb|EGB59793.1| glycyl-radical enzyme activating protein family protein [Escherichia coli M863] Length = 292 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195 >gi|328883089|emb|CCA56328.1| Pyruvate formate-lyase activating enzyme [Streptomyces venezuelae ATCC 10712] Length = 270 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 21/98 (21%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 SGC L C +C DT + G R + D + + G Sbjct: 53 LSGCPLT-----------CLYCHNPDT----WKMRNGKRTSADAVIAEAGKYVRFISVSG 97 Query: 86 RYCVLTGGEPLLQVDV--PLIQAL-NKRGFEIAVETNG 120 ++GGEPLLQ L+ + ++ G A++T+G Sbjct: 98 GGATVSGGEPLLQPVFTGELLHRMKHELGLHTALDTSG 135 >gi|3127055|gb|AAC38452.1| TutE [Thauera aromatica] Length = 375 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 6/89 (6%) Query: 34 LWSGREQDRLSAQCR-FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 L R + +C C G + + G +D++ + G ++G Sbjct: 125 LKLDRSKCINCMRCVAVC---LTGSRDSVGMEMTLDEILREVLSDEPFYRNSGGGVTISG 181 Query: 93 GEPLLQVD--VPLIQALNKRGFEIAVETN 119 G+PL + L + + +RG +A+ET+ Sbjct: 182 GDPLFHPAFTLELARKIKERGVHVAIETS 210 >gi|308063446|gb|ADO05333.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori Sat464] Length = 321 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 61/165 (36%), Gaps = 24/165 (14%) Query: 46 QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102 +C++C T G +D + + ++ G K+ R +TGGEPLL+ Sbjct: 24 RCQYCMPTTPLNFFDGE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDE 78 Query: 103 LIQALNKRGFEIA--VETNGTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQELK 150 I L+ E+A + TNG + D + V S K+ LKI LK Sbjct: 79 FIAKLHAYNKEVALVLSTNGFLLKKMAKDLKNAGLSRVNVSLDSLKSDRVLKISQKDALK 138 Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 + S E + + ++ M +E L + Y Sbjct: 139 NTLEGIEESLEVGLKL---KLNMVVMKSVNDDEILEL-LEYAKNR 179 >gi|254171792|ref|ZP_04878468.1| heme biosynthesis protein [Thermococcus sp. AM4] gi|214033688|gb|EEB74514.1| heme biosynthesis protein [Thermococcus sp. AM4] Length = 554 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 56/153 (36%), Gaps = 16/153 (10%) Query: 28 RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 R +G L + + +C+ C + ++++ L+++ G Sbjct: 145 RLAGPFLIVWNFTNMCNFRCQHC---YQRADKPLASELSLEEKLMLVDQLDKAGVAA--- 198 Query: 88 CVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG-TI--------EPPQGIDWICVSPKA 137 ++GGEP + + +++ L+ RG +V TNG T GI ++ VS + Sbjct: 199 VAISGGEPTIHPHFLRIVKELSSRGIHTSVATNGWTFAKKEELEKAVKAGIKYVEVSVDS 258 Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 K + + + + EN + Sbjct: 259 AKPEKHDKFRGIPGAWEHAVKALENAVELGISH 291 >gi|158522771|ref|YP_001530641.1| radical SAM domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158511597|gb|ABW68564.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3] Length = 348 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 27/116 (23%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 + CNL +C C ++ ++ + +E K Sbjct: 26 LTRCNL-----------RCAHC---YINPDQHGADTLPLETICRWLEAFSPATRKA--NL 69 Query: 89 VLTGGEPLLQVDVPLIQALNKR--GF-EIAVETNGTIE-------PPQGIDWICVS 134 + GGEP L D+ L A + R G+ + ++TNG + P ID+I S Sbjct: 70 IFLGGEPTLHPDLALAAA-HARKIGYDSVTIDTNGYLFNDILDKTTPDTIDYISFS 124 >gi|146301796|ref|YP_001196387.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Flavobacterium johnsoniae UW101] gi|146156214|gb|ABQ07068.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Flavobacterium johnsoniae UW101] Length = 195 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 15/99 (15%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104 +C +C + G+ + + + + ++ + + VL+GGE + ++ P I Sbjct: 2 RCSYC---YNPDIVFGKGKLDFENILNFLKSRIGLLDG----VVLSGGECTIHKNIIPFI 54 Query: 105 QALNKRGFEIAVETNGTIEPPQG-------IDWICVSPK 136 + + GF + ++TNG+ ID+ + K Sbjct: 55 EEIKALGFIVKIDTNGSKPAVLKKLIDQKLIDYAALDFK 93 >gi|82778874|ref|YP_405223.1| pyruvate formate lyase II activase [Shigella dysenteriae Sd197] gi|309783898|ref|ZP_07678543.1| glycyl-radical enzyme activating family protein [Shigella dysenteriae 1617] gi|81243022|gb|ABB63732.1| probable pyruvate formate lyase activating enzyme 2 [Shigella dysenteriae Sd197] gi|308928269|gb|EFP73731.1| glycyl-radical enzyme activating family protein [Shigella dysenteriae 1617] Length = 292 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 139 LQRLRLWGVSCAIETAGDAPVSKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195 >gi|294340360|emb|CAZ88741.1| Molybdenum cofactor biosynthesis protein A (Protein narA) [Thiomonas sp. 3As] Length = 378 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 15/131 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C + + + + ++ ++ I R LTGGEPLL+ Sbjct: 48 DRCNFRCTYCMPKEIFDKHYEFLSHADLLSFEEITRAARIFMSLGVRKIRLTGGEPLLRK 107 Query: 100 DVP-LIQALNK----RGF--EIAVETNGTIEPPQG-------IDWICVSPKAGCDLKIKG 145 ++ L++ L+ G E+ + TNG+I + +D + VS A D + Sbjct: 108 NLERLVEMLHGLRTPEGLAPELTLTTNGSILARKATLLKEARLDRVTVSLDALDDAAFRQ 167 Query: 146 GQELKLVFPQV 156 ++ +V Sbjct: 168 MNDVDFPVAEV 178 >gi|51245329|ref|YP_065213.1| heme biosynthesis protein [Desulfotalea psychrophila LSv54] gi|50876366|emb|CAG36206.1| related to heme biosynthesis protein [Desulfotalea psychrophila LSv54] Length = 336 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 27/128 (21%) Query: 17 GGHAGRVAVF--CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI 74 G AG VF + CNL A C ++ + + + +A + Sbjct: 10 GFQAGERNVFLHI-LTACNLSC--------AHC------YINPEQHGSNTLDKETIAHWL 54 Query: 75 EEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP-------PQ 126 + + EK+ +L GGEP L D+ +I +GF + V++NG + P+ Sbjct: 55 D-LFADAEKKSNLILL-GGEPTLHPDLAEIISIAKAKGFSVTVDSNGYLHHDLLERTSPE 112 Query: 127 GIDWICVS 134 +D++ S Sbjct: 113 ELDYLSFS 120 >gi|307637459|gb|ADN79909.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori 908] Length = 321 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 62/173 (35%), Gaps = 29/173 (16%) Query: 46 QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102 +C++C T +D + + ++ G K+ R +TGGEPLL+ Sbjct: 24 RCQYCMPTTPLDFFDDE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDE 78 Query: 103 LIQALNKRGFEIA--VETNGTI-------EPPQGIDWICV---SPKAGCDLKIKGGQELK 150 I L+ E+A + TNG + G+ + V S K+ LKI LK Sbjct: 79 FIAKLHAYNKEVALVLSTNGFLLKKMVKGLKDAGLSRVNVSLDSLKSDRVLKISQKDALK 138 Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQ 203 + S + + M G +E L + Y S+Q Sbjct: 139 NALEGIEESLKVGLKLKLNTVV---MKGVNDDEILEL-LEYAKNR-----SIQ 182 >gi|261210513|ref|ZP_05924806.1| pyruvate formate-lyase activating enzyme [Vibrio sp. RC341] gi|260840298|gb|EEX66869.1| pyruvate formate-lyase activating enzyme [Vibrio sp. RC341] Length = 246 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 53/156 (33%), Gaps = 27/156 (17%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT G V+++ + Sbjct: 25 VF--LQGC-----------LFRCKYCHNRDT----WDTHTGREVTVEEIIKEAKSYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI-EPPQGIDWICVSPKAG 138 G +GGE +LQ + +A G ++TNG I + ID + Sbjct: 68 NASGGGITCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYIRKFTPVIDEVL----EV 123 Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174 DL + +++ Q + N DF R+ Q Sbjct: 124 TDLVMLDIKQMDDEIHQDLIGVSNKRTLDFARYLHQ 159 >gi|224373777|ref|YP_002608149.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Nautilia profundicola AmH] gi|223588973|gb|ACM92709.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Nautilia profundicola AmH] Length = 225 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 57/143 (39%), Gaps = 34/143 (23%) Query: 11 LTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 ++Q + GR+ FSGCN+ +C +C + + Sbjct: 5 YSIQ---KFSSLDFPGRLCAILWFSGCNM-----------RCPYC---YNKDVVFGEKQI 47 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT--- 121 D++ + ++++ + TGGE L ++ P + + + GFEI ++TNG Sbjct: 48 EEDEVLEFLKKRIGLLDG----VSFTGGEATLYKNIIPFSRKIKEMGFEIKLDTNGLNFD 103 Query: 122 ----IEPPQGIDWICVSPKAGCD 140 + +D+I + KA + Sbjct: 104 VVREMVEENLVDYIALDFKAPPE 126 >gi|169832135|ref|YP_001718117.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Candidatus Desulforudis audaxviator MP104C] gi|169638979|gb|ACA60485.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Candidatus Desulforudis audaxviator MP104C] Length = 263 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 25/127 (19%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 VF R CN +C +C + VD + + + + Sbjct: 21 ATVFLR--RCNF-----------RCPWCQNPELVESSLFDTPVPVDDILHYLRRRRAMLD 67 Query: 83 KEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIEPPQG-------IDWICVS 134 V+TGGEP L + L + + + G + ++TNG+ +D I V Sbjct: 68 G----LVVTGGEPTLSRYLTLFLTRVKEIGVPVKLDTNGSHPELVCGLLDERLVDVIAVD 123 Query: 135 PKAGCDL 141 K L Sbjct: 124 YKVPLRL 130 >gi|169351507|ref|ZP_02868445.1| hypothetical protein CLOSPI_02287 [Clostridium spiroforme DSM 1552] gi|169291729|gb|EDS73862.1| hypothetical protein CLOSPI_02287 [Clostridium spiroforme DSM 1552] Length = 298 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 52/165 (31%) Query: 3 LYSI--KEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDR--------------- 42 + ++ E F T G G +F GCNL W + Sbjct: 1 MINVFNIEKFATHDGPGIRT---TIF--LKGCNLHCPWCANPESWSIKPTLMYDLRKCIK 55 Query: 43 ---------------------LSAQCRFCD----TDFVGIQGTKGGRYNVDQLADLIEEQ 77 +C +C + G +++ + D + + Sbjct: 56 CKKCVNVCKQKAISFDKKFLYDRLKCIYCKKCSESCLTQALTFAGKELSINTIVDEVMKD 115 Query: 78 WITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNG 120 + ++GGEP +Q + LI+ L K+ IA+ET G Sbjct: 116 KDYFDNSNGGITISGGEPFVQFIAMMKLIKELKKQDLHIAIETTG 160 >gi|118476198|ref|YP_893349.1| formate acetyltransferase activating enzyme [Bacillus thuringiensis str. Al Hakam] gi|196045353|ref|ZP_03112585.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus 03BB108] gi|229182833|ref|ZP_04310070.1| hypothetical protein bcere0004_4140 [Bacillus cereus BGSC 6E1] gi|118415423|gb|ABK83842.1| formate acetyltransferase activating enzyme [Bacillus thuringiensis str. Al Hakam] gi|196023937|gb|EDX62612.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus 03BB108] gi|228600639|gb|EEK58222.1| hypothetical protein bcere0004_4140 [Bacillus cereus BGSC 6E1] Length = 243 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG V+++ + Sbjct: 24 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E G ++GGEPLLQ+D + L + + G V+++G Sbjct: 67 EASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTVDSSG 107 >gi|17223652|gb|AAK50370.1| putative benzylsuccinate synthase activating enzyme [Azoarcus sp. T] Length = 332 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 60/173 (34%) Query: 1 MKLYSIKEI--FLTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS-----------AQ 46 M++ + EI F +LQ G G +F GC L + + A+ Sbjct: 1 MRIPVVTEIQRF-SLQDGPGIRT---TIF--LKGCPLRCPWCHNPETQDVRQEFYYYPAR 54 Query: 47 CRFC--------------------------D-TD-----------FVGIQGTKGGRYNVD 68 C C D TD + T G R +V+ Sbjct: 55 CVGCGRCMAVCPAGTSRLVHNSDGRTIVELDRTDCQRCMRCVAACLTDARTTVGQRMSVE 114 Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 ++ G ++GG+PL + L + + +R +A+ET+ Sbjct: 115 EILREALSDSPFYRNSGGGVTISGGDPLFHPSFTLELARRIKERNVHVAIETS 167 >gi|324111425|gb|EGC05406.1| glycyl-radical enzyme activating protein family protein [Escherichia fergusonii B253] Length = 292 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + + G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDVFFRASGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195 >gi|312128493|ref|YP_003993367.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Caldicellulosiruptor hydrothermalis 108] gi|311778512|gb|ADQ07998.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Caldicellulosiruptor hydrothermalis 108] Length = 231 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 30/153 (19%) Query: 29 FSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 F GCN C FC ++D V +G+ + E + Sbjct: 23 FGGCNF-----------SCPFCYNSDLVNFKGSFMDD-------SIFFEYLDKRKGIVDA 64 Query: 88 CVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAG 138 +TGGEP L I+ + R + ++TNG+ +D++ + KA Sbjct: 65 VCITGGEPTLNEEYLTEFIKKIKNRSLLVKLDTNGSRPEVLQRLLDAGLLDYVAMDVKAP 124 Query: 139 CD--LKIKGGQELKLVFPQVNVSPENYIGFDFE 169 + +I G ++ + + + + I ++F Sbjct: 125 LEKYPQITGFSDVDKIRRSIEILKNSNIDYEFR 157 >gi|257791814|ref|YP_003182420.1| Radical SAM domain-containing protein [Eggerthella lenta DSM 2243] gi|257475711|gb|ACV56031.1| Radical SAM domain protein [Eggerthella lenta DSM 2243] Length = 399 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 19/97 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C C + G + + G + + +I++ G + Sbjct: 50 CNL-----------RCVHC---YAGSECKSYEGEMSSGEAKAMIDDLSAFG---APVLLF 92 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 +GGEP ++ DV L+Q RG + + TNGT+ P+ Sbjct: 93 SGGEPCMREDVVELMQHAKDRGMRVVLSTNGTLITPE 129 >gi|94969737|ref|YP_591785.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis Ellin345] gi|94551787|gb|ABF41711.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis Ellin345] Length = 413 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 17/93 (18%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL +C C + + + D+I + + VL Sbjct: 23 GCNL-----------RCVHC--RATATELASPNDLSTPRALDIISQ---IADFCSPILVL 66 Query: 91 TGGEPLLQVDVPLIQALN-KRGFEIAVETNGTI 122 +GGEPL + D+ + ++G +A+ TNGT+ Sbjct: 67 SGGEPLYRPDIFQLARFATEKGIRVALATNGTL 99 >gi|327250596|gb|EGE62304.1| glycyl-radical enzyme activating family protein [Escherichia coli STEC_7v] Length = 279 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 182 >gi|256751948|ref|ZP_05492818.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256749153|gb|EEU62187.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 333 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 17/96 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C + + G++ ++ D+I E G +L Sbjct: 30 CNL-----------DCIYC---YKKVIGSRNDDILPEKAIDIIVEN--LGSNPAVLVILE 73 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ 126 GGEPLL + + L + + + TNGT+ P+ Sbjct: 74 GGEPLLHPRFIEIFYKLKEYSVAVDILTNGTLFTPE 109 >gi|227893095|ref|ZP_04010900.1| formate acetyltransferase activating enzyme [Lactobacillus ultunensis DSM 16047] gi|227865073|gb|EEJ72494.1| formate acetyltransferase activating enzyme [Lactobacillus ultunensis DSM 16047] Length = 275 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 28/111 (25%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK-------------GGRYNVDQLA 71 VF F GC L +C++C + + G VD++ Sbjct: 34 VF--FKGCPL-----------RCKWCSNPESQLGKPEPMFDSSKNKMITCGKFMTVDEVM 80 Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 D + + + G +GGE L Q + L + L G +A ET G Sbjct: 81 DEVMKDKAFYDASGGGVTFSGGEVLFQAKFAIELAKRLKAEGVHLACETTG 131 >gi|82546303|ref|YP_410250.1| pyruvate formate lyase II activase [Shigella boydii Sb227] gi|81247714|gb|ABB68422.1| probable pyruvate formate lyase activating enzyme 2 [Shigella boydii Sb227] Length = 292 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195 >gi|78060080|ref|YP_366655.1| GTP cyclohydrolase subunit MoaA [Burkholderia sp. 383] gi|77964630|gb|ABB06011.1| GTP cyclohydrolase subunit MoaA [Burkholderia sp. 383] Length = 374 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 24/145 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN G R S D+ + + R + QL + G ++ R +T Sbjct: 52 CNFRCGYCMPRESFGA-----DYAFMPSS--ERLSFAQLEKIARAFTSLGVEKIR---IT 101 Query: 92 GGEPLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKA 137 GGEPLL+ ++ LI+ L + EIA+ TNG++ G+ + VS A Sbjct: 102 GGEPLLRRNLEALIERLAALTTVDGKPVEIALTTNGSLLAAKARTLRDAGLSRVTVSLDA 161 Query: 138 GCDLKIKGGQELKLVFPQVNVSPEN 162 D + + + +V E Sbjct: 162 IDDAVFRRMSDADVPVSRVLAGIEA 186 >gi|83590093|ref|YP_430102.1| radical SAM family protein [Moorella thermoacetica ATCC 39073] gi|83573007|gb|ABC19559.1| Radical SAM [Moorella thermoacetica ATCC 39073] Length = 335 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 63/175 (36%), Gaps = 35/175 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CD + + +LI+E G R + + Sbjct: 11 CNL--------------YCDHCYRDAGARVEDELTTAEAGNLIDEAAKAG---FRIMIFS 53 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQ-------------GIDWICVSPKA 137 GGEPLL+ D+P L+ RG + +NGT+ + GI P Sbjct: 54 GGEPLLRPDLPELVSRAAARGLRPVLGSNGTLLTTELARELKAAGALAVGISLDSCDPAR 113 Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-RFSLQPMDGPFLEENTNLAISY 191 L+ K G K V ++ G F+ ++ + LE+ T+LA+ Sbjct: 114 HDRLRQKEGAWRKAV---AGMAACREAGLPFQVHTTVFDWNQDELEKLTDLAVEL 165 >gi|320180323|gb|EFW55255.1| Pyruvate formate-lyase activating enzyme [Shigella boydii ATCC 9905] Length = 292 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQAWDVVKMNLPRV 195 >gi|212640612|ref|YP_002317132.1| Pyruvate-formate lyase-activating enzyme [Anoxybacillus flavithermus WK1] gi|212562092|gb|ACJ35147.1| Pyruvate-formate lyase-activating enzyme [Anoxybacillus flavithermus WK1] Length = 242 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT +G KG + +VD++ D + Sbjct: 23 IF--TQGC-----------LLRCQYCHNADTWEIG----KGKQMSVDEIIDDAQTYLPFM 65 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 + G ++ GEPLLQ+D + L + + G ++++G Sbjct: 66 QASGGGITVSSGEPLLQIDFLIELFRRCKQLGIHTTIDSSG 106 >gi|254430591|ref|ZP_05044294.1| molybdenum cofactor biosynthesis protein A [Cyanobium sp. PCC 7001] gi|197625044|gb|EDY37603.1| molybdenum cofactor biosynthesis protein A [Cyanobium sp. PCC 7001] Length = 356 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 30/112 (26%) Query: 21 GRVAVFCRF---SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77 GR R + CNL C +C G ++ + LIE Sbjct: 19 GRPTGVLRLSLTARCNL-----------ACPYC----CPDAIDPPGLLDLRERLALIEAA 63 Query: 78 WITGEKEGRYCVLTGGEPLLQVDVP-LIQA---LNKRG-----FEIAVETNG 120 G + R LTGGEPLL + L+QA L +RG IA+ TNG Sbjct: 64 ASLGFRCLR---LTGGEPLLHRGLEDLVQAVQPLRRRGGPASLRTIALTTNG 112 >gi|302336771|ref|YP_003801977.1| glycyl-radical enzyme activating protein family [Spirochaeta smaragdinae DSM 11293] gi|301633956|gb|ADK79383.1| glycyl-radical enzyme activating protein family [Spirochaeta smaragdinae DSM 11293] Length = 305 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 6/85 (7%) Query: 46 QCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-- 99 +C C D F + G + + + I + E G +GGEPLLQ+ Sbjct: 85 RCTLCASCVDACFYNARRIAGEVRSSEDIMREIMKDQSFYENSGGGVTFSGGEPLLQIEG 144 Query: 100 DVPLIQALNKRGFEIAVETNGTIEP 124 V L G A+ET G++ Sbjct: 145 LVDLASRCRSEGIHTALETAGSVPW 169 >gi|194429391|ref|ZP_03061915.1| glycyl-radical enzyme activating protein family [Escherichia coli B171] gi|209921436|ref|YP_002295520.1| pyruvate formate lyase II activase [Escherichia coli SE11] gi|218556513|ref|YP_002389427.1| pyruvate formate lyase II activase [Escherichia coli IAI1] gi|260846759|ref|YP_003224537.1| pyruvate formate lyase II activase [Escherichia coli O103:H2 str. 12009] gi|194412538|gb|EDX28836.1| glycyl-radical enzyme activating protein family [Escherichia coli B171] gi|209914695|dbj|BAG79769.1| putative pyruvate formate lyase activating enzyme [Escherichia coli SE11] gi|218363282|emb|CAR00931.1| pyruvate formate lyase II activase [Escherichia coli IAI1] gi|257761906|dbj|BAI33403.1| pyruvate formate lyase II activase [Escherichia coli O103:H2 str. 12009] Length = 292 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195 >gi|320182813|gb|EFW57690.1| Pyruvate formate-lyase activating enzyme [Shigella flexneri CDC 796-83] Length = 292 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195 >gi|306813781|ref|ZP_07447957.1| pyruvate formate lyase II activase [Escherichia coli NC101] gi|305852779|gb|EFM53226.1| pyruvate formate lyase II activase [Escherichia coli NC101] Length = 292 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNG 120 +Q L G A+ET G Sbjct: 139 LQRLRLWGVSCAIETAG 155 >gi|293417460|ref|ZP_06660084.1| pyruvate formate lyase activating enzyme [Escherichia coli B185] gi|291430980|gb|EFF03976.1| pyruvate formate lyase activating enzyme [Escherichia coli B185] Length = 292 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195 >gi|215489289|ref|YP_002331720.1| pyruvate formate lyase II activase [Escherichia coli O127:H6 str. E2348/69] gi|312965391|ref|ZP_07779624.1| glycyl-radical enzyme activating family protein [Escherichia coli 2362-75] gi|215267361|emb|CAS11812.1| pyruvate formate lyase II activase [Escherichia coli O127:H6 str. E2348/69] gi|312290065|gb|EFR17952.1| glycyl-radical enzyme activating family protein [Escherichia coli 2362-75] Length = 292 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATLF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195 >gi|212694740|ref|ZP_03302868.1| hypothetical protein BACDOR_04272 [Bacteroides dorei DSM 17855] gi|212662719|gb|EEB23293.1| hypothetical protein BACDOR_04272 [Bacteroides dorei DSM 17855] Length = 322 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 GG ++++ + ++ G + +LTGGEPLL D L L ++GF + + TN Sbjct: 10 GGLRSIEEWLHIADQLQEIG---TLFILLTGGEPLLYPDFKELYIRLKEKGFILTINTNA 66 Query: 121 TI 122 T+ Sbjct: 67 TL 68 >gi|170680362|ref|YP_001746344.1| pyruvate formate lyase II activase [Escherichia coli SMS-3-5] gi|170518080|gb|ACB16258.1| glycyl-radical enzyme activating protein family [Escherichia coli SMS-3-5] Length = 292 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATLF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195 >gi|26250725|ref|NP_756765.1| pyruvate formate lyase II activase [Escherichia coli CFT073] gi|91213500|ref|YP_543486.1| pyruvate formate lyase II activase [Escherichia coli UTI89] gi|218561023|ref|YP_002393936.1| pyruvate formate lyase II activase [Escherichia coli S88] gi|218692238|ref|YP_002400450.1| pyruvate formate lyase II activase [Escherichia coli ED1a] gi|227885301|ref|ZP_04003106.1| [formate-C-acetyltransferase]-activating enzyme [Escherichia coli 83972] gi|26111156|gb|AAN83339.1|AE016770_139 Pyruvate formate-lyase 2 activating enzyme [Escherichia coli CFT073] gi|91075074|gb|ABE09955.1| pyruvate formate-lyase 2 activating enzyme [Escherichia coli UTI89] gi|218367792|emb|CAR05586.1| pyruvate formate lyase II activase [Escherichia coli S88] gi|218429802|emb|CAR10764.2| pyruvate formate lyase II activase [Escherichia coli ED1a] gi|227837677|gb|EEJ48143.1| [formate-C-acetyltransferase]-activating enzyme [Escherichia coli 83972] gi|294492844|gb|ADE91600.1| glycyl-radical enzyme activating protein family [Escherichia coli IHE3034] gi|307556100|gb|ADN48875.1| pyruvate formate-lyase 2-activating enzyme [Escherichia coli ABU 83972] gi|307629029|gb|ADN73333.1| pyruvate formate lyase II activase [Escherichia coli UM146] gi|323949446|gb|EGB45335.1| glycyl-radical enzyme activating protein family protein [Escherichia coli H252] gi|323954273|gb|EGB50058.1| glycyl-radical enzyme activating protein family protein [Escherichia coli H263] Length = 292 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNG 120 +Q L G A+ET G Sbjct: 139 LQRLRLWGVSCAIETAG 155 >gi|110644292|ref|YP_672022.1| pyruvate formate lyase II activase [Escherichia coli 536] gi|110345884|gb|ABG72121.1| pyruvate formate-lyase 2 activating enzyme [Escherichia coli 536] Length = 292 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNG 120 +Q L G A+ET G Sbjct: 139 LQRLRLWGVSCAIETAG 155 >gi|331660512|ref|ZP_08361446.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme) (Formate-C-acetyltransferase-activating enzyme 2) [Escherichia coli TA206] gi|331052461|gb|EGI24498.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme) (Formate-C-acetyltransferase-activating enzyme 2) [Escherichia coli TA206] Length = 292 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNG 120 +Q L G A+ET G Sbjct: 139 LQRLRLWGVSCAIETAG 155 >gi|160886082|ref|ZP_02067085.1| hypothetical protein BACOVA_04089 [Bacteroides ovatus ATCC 8483] gi|293369069|ref|ZP_06615666.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f] gi|156108895|gb|EDO10640.1| hypothetical protein BACOVA_04089 [Bacteroides ovatus ATCC 8483] gi|292635837|gb|EFF54332.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f] Length = 205 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 21/112 (18%) Query: 11 LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL 70 LT+ GEG F GC L +C++C Y+ +QL Sbjct: 14 LTIDGEGVTTLVA-----FHGCPL-----------RCKYCLNPTSLQPDGVWESYDCNQL 57 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI---QALNKRGFEIAVETN 119 + + + + GGEPLLQ I + L + I VET+ Sbjct: 58 YEEVRKDELYFLASCGGVTFGGGEPLLQS--EFIRQFRQLCGPEWRITVETS 107 >gi|281181023|dbj|BAI57353.1| putative pyruvate formate lyase activating enzyme [Escherichia coli SE15] Length = 292 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNG 120 +Q L G A+ET G Sbjct: 139 LQRLRLWGVSCAIETAG 155 >gi|222035668|emb|CAP78413.1| Pyruvate formate-lyase 2-activating enzyme [Escherichia coli LF82] gi|312948531|gb|ADR29358.1| pyruvate formate lyase II activase [Escherichia coli O83:H1 str. NRG 857C] gi|320196777|gb|EFW71399.1| Pyruvate formate-lyase activating enzyme [Escherichia coli WV_060327] Length = 292 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNG 120 +Q L G A+ET G Sbjct: 139 LQRLRLWGVSCAIETAG 155 >gi|323934441|gb|EGB30854.1| glycyl-radical enzyme activating protein family protein [Escherichia coli E1520] Length = 292 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195 >gi|320173030|gb|EFW48252.1| Pyruvate formate-lyase activating enzyme [Shigella dysenteriae CDC 74-1112] Length = 292 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQCYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195 >gi|315298472|gb|EFU57727.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 16-3] Length = 279 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125 Query: 104 IQALNKRGFEIAVETNG 120 +Q L G A+ET G Sbjct: 126 LQRLRLWGVSCAIETAG 142 >gi|300975911|ref|ZP_07173218.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 45-1] gi|301048629|ref|ZP_07195642.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 185-1] gi|300299549|gb|EFJ55934.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 185-1] gi|300410177|gb|EFJ93715.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 45-1] gi|315289677|gb|EFU49070.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 110-3] gi|315292678|gb|EFU52030.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 153-1] gi|324006717|gb|EGB75936.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 57-2] Length = 279 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125 Query: 104 IQALNKRGFEIAVETNG 120 +Q L G A+ET G Sbjct: 126 LQRLRLWGVSCAIETAG 142 >gi|291531569|emb|CBK97154.1| Pyruvate-formate lyase-activating enzyme [Eubacterium siraeum 70/3] Length = 237 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 19/125 (15%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 RF GC L G + + + G V + + + Sbjct: 19 VRFVLFLQGCPLRCGYCHNPETR------------DASGGKTATVKDIMEKVLRCRNYFG 66 Query: 83 KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140 K G ++GGEPL+Q L + ++G ++T+G I + + V+ D Sbjct: 67 KNGG-ITVSGGEPLMQAKFVTELFKECKRQGINTCLDTSGCIMNDDVTELLKVTDLCMLD 125 Query: 141 LKIKG 145 +K+ Sbjct: 126 IKMTN 130 >gi|254168929|ref|ZP_04875769.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Aciduliprofundum boonei T469] gi|197622193|gb|EDY34768.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Aciduliprofundum boonei T469] Length = 227 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 38/144 (26%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE--EQWI 79 VF GCN +C FC ++ + + D + + I+ + WI Sbjct: 19 VATVF--TYGCNF-----------RCPFC-HNYTLVTEPPTTLLSEDNVIEEIKGLKGWI 64 Query: 80 TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT-----IEPPQGIDWICV 133 G +TGGEP + D+ ++ L++ + ++TNGT IE I ++ + Sbjct: 65 DG------ICITGGEPTIHKDLKDFVKKLSEIA-PVKLDTNGTEPYTLIEVIPYISYVAM 117 Query: 134 S---PK------AGCDLKIKGGQE 148 PK AG + ++ +E Sbjct: 118 DIKAPKYRYNEFAGVSVNMEKIEE 141 >gi|191172690|ref|ZP_03034228.1| glycyl-radical enzyme activating protein family [Escherichia coli F11] gi|300986174|ref|ZP_07177758.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 200-1] gi|190906994|gb|EDV66595.1| glycyl-radical enzyme activating protein family [Escherichia coli F11] gi|300306408|gb|EFJ60928.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 200-1] gi|324012471|gb|EGB81690.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 60-1] Length = 279 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125 Query: 104 IQALNKRGFEIAVETNG 120 +Q L G A+ET G Sbjct: 126 LQRLRLWGVSCAIETAG 142 >gi|323492522|ref|ZP_08097670.1| pyruvate formate lyase-activating enzyme 1 [Vibrio brasiliensis LMG 20546] gi|323313309|gb|EGA66425.1| pyruvate formate lyase-activating enzyme 1 [Vibrio brasiliensis LMG 20546] Length = 246 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 52/161 (32%), Gaps = 28/161 (17%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C +C DT G V+++ + + Sbjct: 25 VF--LQGC-----------LMRCMYCHNRDT----WDTHDGKEVTVEEIINEAKSYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAG 138 G +GGE +LQ + +A G ++TNG I + ID + Sbjct: 68 NASGGGVTCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYIRKHTEVIDEVL----DA 123 Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 DL + + +K + N DF R L + Sbjct: 124 TDLVMLDLKHMKDEIHHDFIGVSNKRTLDFAR-YLHKIGQK 163 >gi|210630236|ref|ZP_03296326.1| hypothetical protein COLSTE_00210 [Collinsella stercoris DSM 13279] gi|210160562|gb|EEA91533.1| hypothetical protein COLSTE_00210 [Collinsella stercoris DSM 13279] Length = 272 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 24/93 (25%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC + +C +C DT VG G V+++ D E Sbjct: 35 VRFVVFTQGCPM-----------RCAYCHNPDTWAVGSGA--GTSVTVERIIDEFESNRP 81 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKR 110 +TGGEPLLQ + L A++ Sbjct: 82 --FYRTGGITVTGGEPLLQPEFVGDLFAAMHAN 112 >gi|117626221|ref|YP_859544.1| pyruvate formate lyase II activase [Escherichia coli APEC O1] gi|237702989|ref|ZP_04533470.1| pyruvate formate-lyase 2 activating enzyme [Escherichia sp. 3_2_53FAA] gi|115515345|gb|ABJ03420.1| pyruvate formate-lyase 2 activating enzyme [Escherichia coli APEC O1] gi|226902926|gb|EEH89185.1| pyruvate formate-lyase 2 activating enzyme [Escherichia sp. 3_2_53FAA] Length = 315 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 47 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 101 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 102 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 161 Query: 104 IQALNKRGFEIAVETNG 120 +Q L G A+ET G Sbjct: 162 LQRLRLWGVSCAIETAG 178 >gi|90579339|ref|ZP_01235149.1| putative pyruvate formate-lyase 1 activating enzyme [Vibrio angustum S14] gi|90440172|gb|EAS65353.1| putative pyruvate formate-lyase 1 activating enzyme [Vibrio angustum S14] Length = 246 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 52/160 (32%), Gaps = 35/160 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT G VD+L + Sbjct: 25 VF--LQGC-----------LMRCKYCHNRDT----WDTHGGREATVDELMHEAKSYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWICVS 134 G +GGE +LQ + +A G ++TNG T + +D Sbjct: 68 NSSGGGVTASGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRKHTDVVDEVLD----- 122 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174 DL + +++ Q V N DF R+ Q Sbjct: 123 ---ATDLVMLDLKQMDDNIHQNLVGVSNKRVLDFARYLHQ 159 >gi|331665608|ref|ZP_08366506.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme) (Formate-C-acetyltransferase-activating enzyme 2) [Escherichia coli TA143] gi|331057293|gb|EGI29283.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme) (Formate-C-acetyltransferase-activating enzyme 2) [Escherichia coli TA143] Length = 292 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195 >gi|294674223|ref|YP_003574839.1| radical SAM domain-containing protein [Prevotella ruminicola 23] gi|294471815|gb|ADE81204.1| radical SAM domain protein [Prevotella ruminicola 23] Length = 278 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 8/90 (8%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 C L + C F G+ Y D+L ++ + + Sbjct: 66 CKLCQRNKGSNSITACPF------GVAEETSRDYLPDELFHILLRDQSLYIESNGGITFS 119 Query: 92 GGEPLLQ--VDVPLIQALNKRGFEIAVETN 119 GGEPL Q V +++ L ++G IA+ET+ Sbjct: 120 GGEPLFQSENLVSVLELLKEKGLHIALETS 149 >gi|319775559|ref|YP_004138047.1| pyruvate-formate lyase-activating enzyme [Haemophilus influenzae F3047] gi|329122398|ref|ZP_08250985.1| [formate-C-acetyltransferase]-activating enzyme [Haemophilus aegyptius ATCC 11116] gi|317450150|emb|CBY86364.1| Predicted pyruvate-formate lyase-activating enzyme [Haemophilus influenzae F3047] gi|327473680|gb|EGF19099.1| [formate-C-acetyltransferase]-activating enzyme [Haemophilus aegyptius ATCC 11116] Length = 262 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 71/194 (36%), Gaps = 43/194 (22%) Query: 3 LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51 + ++ EIF+ L QG R ++F C L C +C Sbjct: 1 MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQSCKL-----------NCLYCH 42 Query: 52 TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109 + T+ + + EQ + R ++GGEP + VPL +AL Sbjct: 43 NPETIPRYTENAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99 Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ------ELKL---VFPQVNVSP 160 +G ++++G E + I V+ K DLK +G + K + PQ + Sbjct: 100 QGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLKGEGIGLQTLCFDRKNQAGIVPQQVILE 159 Query: 161 ENYIGFDFERFSLQ 174 +I D +LQ Sbjct: 160 RLHIKNDKLERNLQ 173 >gi|83745550|ref|ZP_00942608.1| Pyruvate formate-lyase activating enzyme [Ralstonia solanacearum UW551] gi|83727627|gb|EAP74747.1| Pyruvate formate-lyase activating enzyme [Ralstonia solanacearum UW551] Length = 244 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 28/128 (21%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G++A VF +GC +C +C + + Q+ ++ + Sbjct: 42 GQLAAVVFI--AGCP-----------WRCHYC---HNPHLQARERHLHWTQVMAFLQSRR 85 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 + V +GGEPL + +P LI A+ GF+ + T G +DW+ Sbjct: 86 ALLDA----VVFSGGEPLSEPRLPQLIAAVRALGFKTGLHTAGIYPARLAAVLPMLDWVG 141 Query: 133 VSPKAGCD 140 + K Sbjct: 142 LDIKTTAS 149 >gi|268323802|emb|CBH37390.1| conserved hypothetical protein, radical SAM superfamily [uncultured archaeon] Length = 230 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 28/105 (26%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF GCN +C +C + A I E I G + Sbjct: 22 VF--TQGCNF-----------KCPYC---------HNPELVDPKLFAQPIPEADIFGFLQ 59 Query: 85 GRY-----CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 R +TGGEP LQ D+ + + F + ++TNG+ Sbjct: 60 TRRGKLDAVEITGGEPTLQPDLIDFTKKIKSLNFLVKLDTNGSNP 104 >gi|262404211|ref|ZP_06080766.1| pyruvate formate-lyase activating enzyme [Vibrio sp. RC586] gi|262349243|gb|EEY98381.1| pyruvate formate-lyase activating enzyme [Vibrio sp. RC586] Length = 246 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 54/156 (34%), Gaps = 27/156 (17%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT G V+++ + Sbjct: 25 VF--LQGC-----------LFRCKYCHNRDT----WDTHTGREVTVEEIIKEAKSYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI-EPPQGIDWICVSPKAG 138 G +GGE +LQ + L ++ G ++TNG I + ID + Sbjct: 68 NASGGGITCSGGEAMLQPEFVRDLFRSAKAEGIHTCLDTNGYIRKFTPVIDEVL----EV 123 Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174 DL + +++ Q + N DF R+ Q Sbjct: 124 TDLVMLDIKQMDDEIHQDLIGVSNKRTLDFARYLHQ 159 >gi|237720844|ref|ZP_04551325.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 2_2_4] gi|229449679|gb|EEO55470.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 2_2_4] Length = 205 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 21/112 (18%) Query: 11 LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL 70 LT+ GEG F GC L +C++C Y+ +QL Sbjct: 14 LTIDGEGVTTLVA-----FHGCPL-----------RCKYCLNPTSLQPDGVWESYDCNQL 57 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI---QALNKRGFEIAVETN 119 + + + + GGEPLLQ I + L + I VET+ Sbjct: 58 YEEVRKDELYFLASCGGVTFGGGEPLLQS--EFIRQFRQLCGPEWRITVETS 107 >gi|206900847|ref|YP_002251405.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Dictyoglomus thermophilum H-6-12] gi|206739950|gb|ACI19008.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Dictyoglomus thermophilum H-6-12] Length = 228 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 36/167 (21%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G + +F GCN + R K G+Y+ + + + I+ + Sbjct: 16 GIPSFVIF--TQGCNFKCPFCHNPELISQR------------KKGQYSEEFILEEIDRRR 61 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-------PPQGIDW 130 + V+TGGEP LQ D+P + + K+ I ++TNG+ +D+ Sbjct: 62 KL----IKGVVITGGEPTLQEDLPSFLFKIKKKRLLIKLDTNGSNPKMLIEIIKSNLVDY 117 Query: 131 ICVSPKAGCDLKIKGG----QE----LKLVFPQVNVSPENYIGFDFE 169 + + K K E LK +F + + EN I F+ Sbjct: 118 VAMDFKTSPSKYHKAIGLTENETKKYLKNIFESLKILRENKIKFEIR 164 >gi|15896051|ref|NP_349400.1| MoaA/NirJ family Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824] gi|15025836|gb|AAK80740.1|AE007777_4 MoaA/NirJ family Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824] gi|325510205|gb|ADZ21841.1| MoaA/NirJ family Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018] Length = 394 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C+ C + G G T + ++ LI + + + + Sbjct: 47 CNL-----------RCKHC---YAGSDGKTYKDELSTEEAYSLIADL---SDFKVPVIIF 89 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 +GGEPL++ D+ LI+ K + TNGT+ Sbjct: 90 SGGEPLIRKDIFELIEFAKKNNIRSTLSTNGTL 122 >gi|300868798|ref|ZP_07113406.1| Pyruvate formate-lyase activating enzyme [Oscillatoria sp. PCC 6506] gi|300333208|emb|CBN58598.1| Pyruvate formate-lyase activating enzyme [Oscillatoria sp. PCC 6506] Length = 247 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 18/100 (18%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 RF SGC L + CR+ G + +VD+L + I++ Sbjct: 25 IRFIIFTSGCPLRCLYCSNPD---CRY---------LENGKKVSVDELIEEIQKYKSYMN 72 Query: 83 KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 G ++GGE L Q + + G A++T+G Sbjct: 73 SSGGGVTISGGEALFQPHFVTEIFKRCRALGIHTALDTSG 112 >gi|292669987|ref|ZP_06603413.1| pyruvate formate-lyase-activating enzyme [Selenomonas noxia ATCC 43541] gi|292648399|gb|EFF66371.1| pyruvate formate-lyase-activating enzyme [Selenomonas noxia ATCC 43541] Length = 256 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 31/128 (24%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 E F ++ G G RF GC +C++C G Sbjct: 15 TESFGSVDGPG---------IRFIVFMQGC-----------RYRCQYCHNPETWT-AEGG 53 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 + +++ +K G ++GGEPLLQ++ L + ++G A++T G Sbjct: 54 YEASPEEIFQQAMRYRPYWKKTGG-ITVSGGEPLLQLEFVTELFRLAKEKGVTTAIDTAG 112 Query: 121 ---TIEPP 125 T E P Sbjct: 113 EPFTHEEP 120 >gi|291280013|ref|YP_003496848.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Deferribacter desulfuricans SSM1] gi|290754715|dbj|BAI81092.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Deferribacter desulfuricans SSM1] Length = 227 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 22/97 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF SGCNL CRFC + + D+ D E + + Sbjct: 22 VFI--SGCNLL-----------CRFC-----YNRELVLKKLVKDKTEDFFEYLIL---NK 60 Query: 85 GRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 +Y +TGGEPL + + L K G I ++TNG Sbjct: 61 IKYVAITGGEPLFHPHILDFFEKLKKLGVSIKLDTNG 97 >gi|119897898|ref|YP_933111.1| molybdenum cofactor biosynthesis protein A [Azoarcus sp. BH72] gi|119670311|emb|CAL94224.1| molybdenum cofactor biosynthesis protein A [Azoarcus sp. BH72] Length = 357 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 22/144 (15%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + +G + +++ + G ++ R +TGGE Sbjct: 43 DRCNFRCVYCMPREVFDKDYPFL--PRGQLLSFEEILRVARLFVARGVRKIR---ITGGE 97 Query: 95 PLLQVDVP-LIQALNKR-GFEIAVETNGTIEP-------PQGIDWICVSPKAGCDLKIKG 145 PLL+ D+ L++ L G E+ + TNG + P G+ + VS A D + Sbjct: 98 PLLRKDIERLVEMLAALDGVELTLTTNGVLLPRLAKKLRDAGLHRVTVSLDALDDATFRR 157 Query: 146 GQELKLVFPQV--NVSPENYIGFD 167 + +V ++ GF+ Sbjct: 158 MNDADYPVERVLEGIAAARDAGFE 181 >gi|49176447|ref|NP_418387.3| pyruvate formate lyase II activase [Escherichia coli str. K-12 substr. MG1655] gi|89110078|ref|AP_003858.1| pyruvate formate lyase II activase [Escherichia coli str. K-12 substr. W3110] gi|170083421|ref|YP_001732741.1| pyruvate formate lyase II activase [Escherichia coli str. K-12 substr. DH10B] gi|238903017|ref|YP_002928813.1| pyruvate formate lyase II activase [Escherichia coli BW2952] gi|256026010|ref|ZP_05439875.1| pyruvate formate lyase II activase [Escherichia sp. 4_1_40B] gi|307140651|ref|ZP_07500007.1| pyruvate formate lyase II activase [Escherichia coli H736] gi|585665|sp|P32675|PFLC_ECOLI RecName: Full=Pyruvate formate-lyase 2-activating enzyme; AltName: Full=Formate-C-acetyltransferase-activating enzyme 2; AltName: Full=PFL-activating enzyme 2 gi|1790389|gb|AAC76934.1| pyruvate formate lyase II activase [Escherichia coli str. K-12 substr. MG1655] gi|85676109|dbj|BAE77359.1| pyruvate formate lyase II activase [Escherichia coli str. K12 substr. W3110] gi|169891256|gb|ACB04963.1| pyruvate formate lyase II activase [Escherichia coli str. K-12 substr. DH10B] gi|238863360|gb|ACR65358.1| pyruvate formate lyase II activase [Escherichia coli BW2952] gi|260451212|gb|ACX41634.1| glycyl-radical enzyme activating protein family [Escherichia coli DH1] gi|315138517|dbj|BAJ45676.1| pyruvate formate lyase II activase [Escherichia coli DH1] Length = 292 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195 >gi|309704376|emb|CBJ03725.1| pyruvate formate-lyase 2 activating enzyme [Escherichia coli ETEC H10407] Length = 292 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNG 120 +Q L G A+ET G Sbjct: 139 LQRLRLWGVSCAIETAG 155 >gi|331675446|ref|ZP_08376196.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme) (Formate-C-acetyltransferase-activating enzyme 2) [Escherichia coli TA280] gi|284924053|emb|CBG37152.1| pyruvate formate-lyase 2 activating enzyme [Escherichia coli 042] gi|331067506|gb|EGI38911.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme) (Formate-C-acetyltransferase-activating enzyme 2) [Escherichia coli TA280] Length = 292 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195 >gi|289193018|ref|YP_003458959.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22] gi|288939468|gb|ADC70223.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22] Length = 467 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C+ C + N ++ +++ I G + Sbjct: 123 CNL-----------RCKHC---YANAGKPLEDELNTEEAKKVVD---ILGNAGVVALAFS 165 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPL++ D+ LI + ++++ TNGT+ Sbjct: 166 GGEPLMRKDLFELIDRVKDYDMQVSIATNGTL 197 >gi|256021655|ref|ZP_05435520.1| pyruvate formate lyase II activase [Shigella sp. D9] Length = 292 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195 >gi|330908275|gb|EGH36794.1| pyruvate formate-lyase activating enzyme [Escherichia coli AA86] Length = 279 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125 Query: 104 IQALNKRGFEIAVETNG 120 +Q L G A+ET G Sbjct: 126 LQRLRLWGVSCAIETAG 142 >gi|315651793|ref|ZP_07904797.1| pyruvate formate-lyase activating enzyme [Eubacterium saburreum DSM 3986] gi|315485923|gb|EFU76301.1| pyruvate formate-lyase activating enzyme [Eubacterium saburreum DSM 3986] Length = 248 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 23/101 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC + +C+FC DT + + ++ D Sbjct: 25 VFV--QGCPM-----------RCQFCHNPDT----WSTDENQSFTAKEVFDKAIRYKPY- 66 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 K+ ++GGEPLLQ+D L + + G ++T G Sbjct: 67 WKDNGGITVSGGEPLLQIDFLTELFRLCKENGVNTCLDTAG 107 >gi|300926218|ref|ZP_07142023.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 182-1] gi|300417753|gb|EFK01064.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 182-1] gi|323161239|gb|EFZ47153.1| glycyl-radical enzyme activating family protein [Escherichia coli E128010] gi|324019663|gb|EGB88882.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 117-3] Length = 279 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 182 >gi|59712198|ref|YP_204974.1| pyruvate formate lyase-activating enzyme 1 [Vibrio fischeri ES114] gi|59480299|gb|AAW86086.1| pyruvate formate lyase activating enzyme 1 [Vibrio fischeri ES114] Length = 245 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 53/161 (32%), Gaps = 28/161 (17%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C +C DT G V +L + + Sbjct: 24 VF--LQGC-----------LMRCMYCHNRDT----WDTHDGKEVTVAELIEEAKSYRHFM 66 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQG-IDWICVSPKAG 138 + G +GGE +LQ + +A G ++TNG I ID + Sbjct: 67 KASGGGITCSGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRKHTDVIDEVL----EA 122 Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 DL + +++K + + N DF R L + Sbjct: 123 SDLVMLDLKQMKDDVHKEFIGVSNTRVLDFAR-YLHKIGQK 162 >gi|46581407|ref|YP_012215.1| radical SAM domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|46450829|gb|AAS97475.1| radical SAM domain protein [Desulfovibrio vulgaris str. Hildenborough] Length = 624 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 43/109 (39%), Gaps = 20/109 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C +C D D G QG K ++D + L E G K + Sbjct: 329 CNL-----------ACVWCSDKDLRGRQGVK-ATLSLDTVRRLTHELREGGTKG--IVIE 374 Query: 91 TGGEPLLQVDVPLIQA-LNKRGFEIAVETNGTIEPPQGI----DWICVS 134 GGEP L D I A + G + TNG + P + DW+ VS Sbjct: 375 GGGEPTLHPDFAAIVACITDAGMGAGLITNGVVTLPPDVLRRLDWVRVS 423 >gi|319941886|ref|ZP_08016207.1| ribonucleotide reductase activating protein [Sutterella wadsworthensis 3_1_45B] gi|319804539|gb|EFW01409.1| ribonucleotide reductase activating protein [Sutterella wadsworthensis 3_1_45B] Length = 264 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 21/119 (17%) Query: 26 FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C ++ + + D +EE Sbjct: 54 FV--QGCP-----------WRCIYCQNPWMQPKDFDPS-LSHDSWH-RLEELLKRRRGLL 98 Query: 86 RYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAG 138 V +GGEP + +P + + GF++ + T G I +DW+ + KA Sbjct: 99 DAVVFSGGEPTVDPALPDAVARVKAMGFKVGLHTGGIIPARLARVLPMLDWVGIDVKAP 157 >gi|319760860|ref|YP_004124797.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Alicycliphilus denitrificans BC] gi|330822765|ref|YP_004386068.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Alicycliphilus denitrificans K601] gi|317115421|gb|ADU97909.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Alicycliphilus denitrificans BC] gi|329308137|gb|AEB82552.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Alicycliphilus denitrificans K601] Length = 226 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 42/127 (33%), Gaps = 26/127 (20%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 GR+A VFC GC +C +C AD +++ Sbjct: 25 GRLAAVVFC--QGCP-----------WRCGYC----HNTGLLDAATPTAHAWAD-VQQLL 66 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 V +GGEP LQ +P + + GF + T G +DW+ Sbjct: 67 HARRGLLDGVVFSGGEPTLQAGLPDALARVRAMGFATGLHTAGMYPERLATLLPLLDWVG 126 Query: 133 VSPKAGC 139 + KA Sbjct: 127 LDIKAPL 133 >gi|145299597|ref|YP_001142438.1| pyruvate formate lyase-activating enzyme 1 [Aeromonas salmonicida subsp. salmonicida A449] gi|142852369|gb|ABO90690.1| pyruvate formate-lyase 1 activating enzyme [Aeromonas salmonicida subsp. salmonicida A449] Length = 261 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G V +L I Sbjct: 35 IRFIVFMQGC-----------LMRCKYCHNRDT----WDTQGGREVTVPELMSDITSYRH 79 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + L A ++G ++TNG Sbjct: 80 FMNASGGGVTASGGEAMLQQNFIAELFAACKEKGVHTCLDTNG 122 >gi|94265921|ref|ZP_01289648.1| Radical SAM [delta proteobacterium MLMS-1] gi|93453545|gb|EAT03950.1| Radical SAM [delta proteobacterium MLMS-1] Length = 343 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 6/82 (7%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104 +C +C + + ++ ++++ G + + VL GGEPLL D+ ++ Sbjct: 40 RCIYC---YAESGLPLEQELTLSEIKQVVDQAAGLGAR--KVVVLGGGEPLLYPDIFTVL 94 Query: 105 QALNKRGFEIAVETNGTIEPPQ 126 + +G + + TNGT+ P Sbjct: 95 DYILNKGMKADIFTNGTLITPA 116 >gi|89900261|ref|YP_522732.1| molybdenum cofactor biosynthesis protein A [Rhodoferax ferrireducens T118] gi|89344998|gb|ABD69201.1| GTP cyclohydrolase subunit MoaA [Rhodoferax ferrireducens T118] Length = 388 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 56/142 (39%), Gaps = 25/142 (17%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + +++ + + G ++ R LTGGE Sbjct: 56 DRCNFRCNYCMPKEIFDKDYAYL--PHKALLSFEEITRIAKVFVAHGVQKIR---LTGGE 110 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEPPQGIDW-------ICVSPKAGCD 140 PLL+ ++ LI+ L + +I + TNG++ + D + VS D Sbjct: 111 PLLRKNIERLIEQLAALRTPQGQALDITLTTNGSLLARKARDLKAAGLQRVTVSLDGLDD 170 Query: 141 LKIKGGQELKLVFPQVNVSPEN 162 + ++ V E Sbjct: 171 AVFRRMNDVDFPVADVLAGIEA 192 >gi|332105248|gb|EGJ08594.1| pyruvate formate-lyase 2 activating enzyme [Shigella sp. D9] Length = 315 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 47 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 101 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 102 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 161 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 162 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 218 >gi|300916995|ref|ZP_07133693.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 115-1] gi|301023724|ref|ZP_07187467.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 69-1] gi|300396908|gb|EFJ80446.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 69-1] gi|300415747|gb|EFJ99057.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 115-1] gi|325499308|gb|EGC97167.1| pyruvate formate lyase activating enzyme [Escherichia fergusonii ECD227] Length = 279 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 182 >gi|281603342|gb|ADA76326.1| Glycyl-radical enzyme activating protein family [Shigella flexneri 2002017] Length = 292 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195 >gi|262194521|ref|YP_003265730.1| radical SAM protein [Haliangium ochraceum DSM 14365] gi|262077868|gb|ACY13837.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365] Length = 327 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 15/86 (17%) Query: 88 CVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146 +TGGEPLL V L+ AL++ G + T+GT ID + G L G Sbjct: 81 VAITGGEPLLHDGAVALVAALSELGLRTVLFTSGTR-----IDEL------GEALVQAGL 129 Query: 147 QELKLVFPQVNVSPENYIGFDFERFS 172 EL+ F + P FER Sbjct: 130 DELRFSFNEF---PYAMSDIAFERLW 152 >gi|218707579|ref|YP_002415098.1| pyruvate formate lyase II activase [Escherichia coli UMN026] gi|293407573|ref|ZP_06651492.1| pyruvate formate-lyase activating enzyme [Escherichia coli FVEC1412] gi|298383321|ref|ZP_06992914.1| pyruvate formate lyase activating enzyme [Escherichia coli FVEC1302] gi|218434676|emb|CAR15609.1| pyruvate formate lyase II activase [Escherichia coli UMN026] gi|291425490|gb|EFE98529.1| pyruvate formate-lyase activating enzyme [Escherichia coli FVEC1412] gi|298276355|gb|EFI17875.1| pyruvate formate lyase activating enzyme [Escherichia coli FVEC1302] Length = 292 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNG 120 +Q L G A+ET G Sbjct: 139 LQRLRLWGVSCAIETAG 155 >gi|254039214|ref|ZP_04873264.1| pyruvate formate-lyase 2 activating enzyme [Escherichia sp. 1_1_43] gi|331644689|ref|ZP_08345808.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme) (Formate-C-acetyltransferase-activating enzyme 2) [Escherichia coli H736] gi|396299|gb|AAC43058.1| ORF_o315 [Escherichia coli str. K-12 substr. MG1655] gi|226838650|gb|EEH70679.1| pyruvate formate-lyase 2 activating enzyme [Escherichia sp. 1_1_43] gi|331036151|gb|EGI08387.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme) (Formate-C-acetyltransferase-activating enzyme 2) [Escherichia coli H736] Length = 315 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 47 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 101 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 102 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 161 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 162 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 218 >gi|146283853|ref|YP_001174006.1| heme d1 biosynthesis protein NirJ [Pseudomonas stutzeri A1501] gi|71841660|gb|AAZ43114.1| NirJ [Pseudomonas stutzeri A1501] gi|145572058|gb|ABP81164.1| heme d1 biosynthesis protein NirJ [Pseudomonas stutzeri A1501] Length = 393 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 14/111 (12%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + R + CR C + + +I++ G R +L+G Sbjct: 30 PVVIWNLLRRCNLTCRHC--YATSADSEFRDELDTAEALRVIDDLHEAG---VRVLILSG 84 Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGI--------DWICVS 134 GEPLL+ D+ L +GF +A+ TNGT+ I D++ +S Sbjct: 85 GEPLLRGDIFQLADYARDKGFFVALSTNGTLIDEGNIARIAAARFDYVGIS 135 >gi|323182054|gb|EFZ67464.1| glycyl-radical enzyme activating family protein [Escherichia coli 1357] Length = 279 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 182 >gi|313204596|ref|YP_004043253.1| radical sam domain protein [Paludibacter propionicigenes WB4] gi|312443912|gb|ADQ80268.1| Radical SAM domain protein [Paludibacter propionicigenes WB4] Length = 416 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 7/77 (9%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQ 105 C +C + G K ++ D+I + + + V+TGGEPL+ V I Sbjct: 83 CPYC---YKGNAH-KAKYMDMSTYCDIISKVSSINSEC--HFVITGGEPLMHPLFVEFID 136 Query: 106 ALNKRGFEIAVETNGTI 122 L KR ++ TNG++ Sbjct: 137 FLEKRKNSYSILTNGSL 153 >gi|15804548|ref|NP_290589.1| pyruvate formate lyase II activase [Escherichia coli O157:H7 EDL933] gi|157163429|ref|YP_001460747.1| pyruvate formate lyase II activase [Escherichia coli HS] gi|168748741|ref|ZP_02773763.1| glycyl-radical enzyme activating protein family [Escherichia coli O157:H7 str. EC4113] gi|168761656|ref|ZP_02786663.1| glycyl-radical enzyme activating protein family [Escherichia coli O157:H7 str. EC4501] gi|168775203|ref|ZP_02800210.1| glycyl-radical enzyme activating protein family [Escherichia coli O157:H7 str. EC4196] gi|168799457|ref|ZP_02824464.1| glycyl-radical enzyme activating protein family [Escherichia coli O157:H7 str. EC508] gi|188493956|ref|ZP_03001226.1| glycyl-radical enzyme activating protein family [Escherichia coli 53638] gi|194438344|ref|ZP_03070435.1| glycyl-radical enzyme activating protein family [Escherichia coli 101-1] gi|195937602|ref|ZP_03082984.1| pyruvate formate lyase II activase [Escherichia coli O157:H7 str. EC4024] gi|208813297|ref|ZP_03254626.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7 str. EC4045] gi|208820425|ref|ZP_03260745.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7 str. EC4042] gi|253775409|ref|YP_003038240.1| pyruvate formate lyase II activase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163902|ref|YP_003047010.1| pyruvate formate lyase II activase [Escherichia coli B str. REL606] gi|254795957|ref|YP_003080794.1| pyruvate formate lyase II activase [Escherichia coli O157:H7 str. TW14359] gi|260870672|ref|YP_003237074.1| pyruvate formate lyase II activase [Escherichia coli O111:H- str. 11128] gi|261226424|ref|ZP_05940705.1| pyruvate formate lyase II activase [Escherichia coli O157:H7 str. FRIK2000] gi|261256824|ref|ZP_05949357.1| pyruvate formate lyase II activase [Escherichia coli O157:H7 str. FRIK966] gi|291285372|ref|YP_003502190.1| Glycyl-radical enzyme activating protein family [Escherichia coli O55:H7 str. CB9615] gi|293472270|ref|ZP_06664680.1| pyruvate formate lyase activating enzyme [Escherichia coli B088] gi|12518871|gb|AAG59154.1|AE005626_9 probable pyruvate formate lyase activating enzyme 2 [Escherichia coli O157:H7 str. EDL933] gi|13364357|dbj|BAB38304.1| probable pyruvate formate lyase activating enzyme 2 [Escherichia coli O157:H7 str. Sakai] gi|157069109|gb|ABV08364.1| glycyl-radical enzyme activating protein family [Escherichia coli HS] gi|187769121|gb|EDU32965.1| glycyl-radical enzyme activating protein family [Escherichia coli O157:H7 str. EC4196] gi|188016774|gb|EDU54896.1| glycyl-radical enzyme activating protein family [Escherichia coli O157:H7 str. EC4113] gi|188489155|gb|EDU64258.1| glycyl-radical enzyme activating protein family [Escherichia coli 53638] gi|189367890|gb|EDU86306.1| glycyl-radical enzyme activating protein family [Escherichia coli O157:H7 str. EC4501] gi|189378026|gb|EDU96442.1| glycyl-radical enzyme activating protein family [Escherichia coli O157:H7 str. EC508] gi|194422781|gb|EDX38777.1| glycyl-radical enzyme activating protein family [Escherichia coli 101-1] gi|208734574|gb|EDZ83261.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7 str. EC4045] gi|208740548|gb|EDZ88230.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7 str. EC4042] gi|209752068|gb|ACI74341.1| PTS system fructose-like IIB component 2 [Escherichia coli] gi|209752070|gb|ACI74342.1| PTS system fructose-like IIB component 2 [Escherichia coli] gi|209752072|gb|ACI74343.1| PTS system fructose-like IIB component 2 [Escherichia coli] gi|209752074|gb|ACI74344.1| PTS system fructose-like IIB component 2 [Escherichia coli] gi|209752076|gb|ACI74345.1| PTS system fructose-like IIB component 2 [Escherichia coli] gi|242379488|emb|CAQ34303.1| probable pyruvate formate lyase 2 activating enzyme [Escherichia coli BL21(DE3)] gi|253326453|gb|ACT31055.1| glycyl-radical enzyme activating protein family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975803|gb|ACT41474.1| pyruvate formate lyase II activase [Escherichia coli B str. REL606] gi|253979960|gb|ACT45630.1| pyruvate formate lyase II activase [Escherichia coli BL21(DE3)] gi|254595357|gb|ACT74718.1| pyruvate formate lyase II activase [Escherichia coli O157:H7 str. TW14359] gi|257767028|dbj|BAI38523.1| pyruvate formate lyase II activase [Escherichia coli O111:H- str. 11128] gi|290765245|gb|ADD59206.1| Glycyl-radical enzyme activating protein family [Escherichia coli O55:H7 str. CB9615] gi|291321364|gb|EFE60804.1| pyruvate formate lyase activating enzyme [Escherichia coli B088] gi|320190946|gb|EFW65596.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7 str. EC1212] gi|320639126|gb|EFX08762.1| pyruvate formate lyase II activase [Escherichia coli O157:H7 str. G5101] gi|320644518|gb|EFX13579.1| pyruvate formate lyase II activase [Escherichia coli O157:H- str. 493-89] gi|320649842|gb|EFX18357.1| pyruvate formate lyase II activase [Escherichia coli O157:H- str. H 2687] gi|320655192|gb|EFX23141.1| pyruvate formate lyase II activase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660816|gb|EFX28266.1| pyruvate formate lyase II activase [Escherichia coli O55:H7 str. USDA 5905] gi|320665934|gb|EFX32960.1| pyruvate formate lyase II activase [Escherichia coli O157:H7 str. LSU-61] gi|323943631|gb|EGB39738.1| glycyl-radical enzyme activating protein family protein [Escherichia coli H120] gi|323959279|gb|EGB54940.1| glycyl-radical enzyme activating protein family protein [Escherichia coli H489] gi|323969704|gb|EGB64988.1| glycyl-radical enzyme activating protein family protein [Escherichia coli TA007] gi|326338030|gb|EGD61860.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7 str. 1044] gi|326342675|gb|EGD66448.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7 str. 1125] Length = 292 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195 >gi|315497758|ref|YP_004086562.1| radical sam domain protein [Asticcacaulis excentricus CB 48] gi|315415770|gb|ADU12411.1| Radical SAM domain protein [Asticcacaulis excentricus CB 48] Length = 466 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 14/103 (13%) Query: 31 GCNLWSGREQDRLSAQCR-----------FCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G D C C T + + G +++++ + + + + Sbjct: 80 GCPYDCGLCSDHEQHSCVSIVELTDRCNLTCPTCYASSSPSHGRHRSLEEI-ETMLDIVV 138 Query: 80 TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETNG 120 E E L+GGEP L D ++ R + + TNG Sbjct: 139 ASEGEPDVVQLSGGEPTLHPDFFAVMDMAKARPIKHLMINTNG 181 >gi|331685696|ref|ZP_08386279.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme) (Formate-C-acetyltransferase-activating enzyme 2) [Escherichia coli H299] gi|331077167|gb|EGI48382.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme) (Formate-C-acetyltransferase-activating enzyme 2) [Escherichia coli H299] Length = 292 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNG 120 +Q L G A+ET G Sbjct: 139 LQRLRLWGVSCAIETAG 155 >gi|34557098|ref|NP_906913.1| putative radical-activating enzyme [Wolinella succinogenes DSM 1740] gi|34482813|emb|CAE09813.1| PUTATIVE RADICAL-ACTIVATING ENZYME [Wolinella succinogenes] Length = 223 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 26/116 (22%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 FSGCNL C +C + + G+ +++ L + + E Sbjct: 27 FSGCNL-----------ACSYC---YNPEFLKESGKIDLEGLLSFLRSRVGLLEG----V 68 Query: 89 VLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIEP-------PQGIDWICVSPK 136 V +GGE L +PL ++ + GF+I ++TNGT +D++ + K Sbjct: 69 VFSGGEATLFAGLPLWMEEVRSLGFKIKLDTNGTNPAMLKELLQKGYLDYVAMDFK 124 >gi|323189621|gb|EFZ74900.1| glycyl-radical enzyme activating family protein [Escherichia coli RN587/1] Length = 279 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATLF 125 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 182 >gi|107022977|ref|YP_621304.1| molybdenum cofactor biosynthesis protein A [Burkholderia cenocepacia AU 1054] gi|116686780|ref|YP_840027.1| molybdenum cofactor biosynthesis protein A [Burkholderia cenocepacia HI2424] gi|105893166|gb|ABF76331.1| GTP cyclohydrolase subunit MoaA [Burkholderia cenocepacia AU 1054] gi|116652495|gb|ABK13134.1| GTP cyclohydrolase subunit MoaA [Burkholderia cenocepacia HI2424] Length = 374 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 24/145 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN G R S D+ + + R + QL + G ++ R +T Sbjct: 52 CNFRCGYCMPRESFGA-----DYAFMPSS--ERLSFAQLEKIARAFTSLGVEKIR---IT 101 Query: 92 GGEPLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKA 137 GGEPLL+ ++ LI+ L + EIA+ TNG++ G+ + VS A Sbjct: 102 GGEPLLRRNLEALIERLAALTTVDGKPVEIALTTNGSLLAAKARALRDAGLSRVTVSLDA 161 Query: 138 GCDLKIKGGQELKLVFPQVNVSPEN 162 D + + + +V E Sbjct: 162 LDDAVFRRMSDADVPVARVLAGIEA 186 >gi|315654547|ref|ZP_07907453.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Mobiluncus curtisii ATCC 51333] gi|315491011|gb|EFU80630.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Mobiluncus curtisii ATCC 51333] Length = 266 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 49/150 (32%), Gaps = 37/150 (24%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +VF GC C +C + I Y+ L +L+ + Sbjct: 35 VASVF--LQGCP-----------WNCGYC-QNVAIIDPRAPAGYHEADLWELLGRRRGLL 80 Query: 82 EKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICV 133 + V +GGEP Q VP Q + GF + + T G +DW+ + Sbjct: 81 DG----VVFSGGEPTRQAALVPAAQRVRDLGFLVGLHTGGAYPKRLEQLLDAGLLDWVGL 136 Query: 134 SPKAGCDLKIKGGQELKLVFPQVNVSPENY 163 K L +PQV P+ + Sbjct: 137 DVKG-----------LAQNYPQVVGRPQAH 155 >gi|240102908|ref|YP_002959217.1| putative Fe-S oxidoreductase, containing Elp3 domain [Thermococcus gammatolerans EJ3] gi|239910462|gb|ACS33353.1| Predicted Fe-S oxidoreductase, containing Elp3 domain [Thermococcus gammatolerans EJ3] Length = 558 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 57/153 (37%), Gaps = 16/153 (10%) Query: 28 RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 R +G L + + +C+ C + ++++ +L+++ G Sbjct: 149 RLAGPFLIVWNFTNMCNFRCKHC---YQRADRPLPSELSLEEKLNLVDQLDKAGVAA--- 202 Query: 88 CVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG-TI--------EPPQGIDWICVSPKA 137 ++GGEP + + +++ L+ RG +V TNG T GI ++ VS + Sbjct: 203 VAISGGEPTIHPHFLRIVRELSSRGIHTSVATNGWTFARKEELEKAVKAGIKYVEVSVDS 262 Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 K + + + + EN + Sbjct: 263 AKPEKHDEFRGIPGAWEHAVKALENAVELGLSH 295 >gi|20094510|ref|NP_614357.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19] gi|19887619|gb|AAM02287.1| Predicted Fe-S oxidoreductase [Methanopyrus kandleri AV19] Length = 499 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 19/106 (17%) Query: 31 GCNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIE 75 GC L G +R + C C F + +++Q+ ++++ Sbjct: 77 GCPLDCGLCPCHESTTALGIIDVTNRCNMNCPVC---FANAEAKGYVYEPSLEQIEEMLD 133 Query: 76 EQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 GGEPL++ D+ ++ A ++RGF + + TNG Sbjct: 134 LLRSERPVPAPAVQFAGGEPLVREDIVEIVAAADERGFHVQIATNG 179 >gi|300948266|ref|ZP_07162383.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 116-1] gi|300954683|ref|ZP_07167122.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 175-1] gi|301024098|ref|ZP_07187811.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 196-1] gi|301645143|ref|ZP_07245101.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 146-1] gi|299880553|gb|EFI88764.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 196-1] gi|300318353|gb|EFJ68137.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 175-1] gi|300452209|gb|EFK15829.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 116-1] gi|301076570|gb|EFK91376.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 146-1] gi|315617748|gb|EFU98353.1| glycyl-radical enzyme activating family protein [Escherichia coli 3431] Length = 279 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 182 >gi|296242049|ref|YP_003649536.1| radical SAM domain-containing protein [Thermosphaera aggregans DSM 11486] gi|296094633|gb|ADG90584.1| Radical SAM domain protein [Thermosphaera aggregans DSM 11486] Length = 274 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 15/92 (16%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL +C FC + T G + + I I + Y L Sbjct: 63 GCNL-----------RCGFCWSWRFSHVSTGGWFESAESAFQKIYS--IAARNKYEYVRL 109 Query: 91 TGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120 +GGEP L + L IQ ++ F +ETNG Sbjct: 110 SGGEPTLSKNHLLKIIQLFSETSFTFILETNG 141 >gi|289580100|ref|YP_003478566.1| molybdenum cofactor biosynthesis protein A [Natrialba magadii ATCC 43099] gi|289529653|gb|ADD04004.1| molybdenum cofactor biosynthesis protein A [Natrialba magadii ATCC 43099] Length = 341 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 20/108 (18%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + C +C DT G + + + D++ + E + TGGE Sbjct: 19 DRCNFDCVYCHNEGLGDTR-----GPMDPQDDEMETDDVVRFLEVAAEFDVDAVKFTGGE 73 Query: 95 PLL-QVDVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS 134 P+L Q +I+ ++ E+++ TNGT P G+D + VS Sbjct: 74 PMLRQDLTEIIERTPEQ-MEVSLTTNGTFLPGRAEELVDAGLDRVNVS 120 >gi|218701338|ref|YP_002408967.1| pyruvate formate lyase II activase [Escherichia coli IAI39] gi|218371324|emb|CAR19156.1| pyruvate formate lyase II activase [Escherichia coli IAI39] Length = 292 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATLF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195 >gi|158317934|ref|YP_001510442.1| radical SAM domain-containing protein [Frankia sp. EAN1pec] gi|158113339|gb|ABW15536.1| Radical SAM domain protein [Frankia sp. EAN1pec] Length = 332 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 50/146 (34%), Gaps = 27/146 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C R V+Q ++E L Sbjct: 38 CNLSC--------EGCG----KIQHPADVLKQRMPVEQALAAVDECG------APVVCLA 79 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE-- 148 GGEPL+ + +++ L KR I + TN + P+ ID + SP + I G ++ Sbjct: 80 GGEPLMHPQIEQIVEGLVKRKKFIYLCTN-AVLLPRKIDKLKPSPYLSLAVHIDGLEDRH 138 Query: 149 -----LKLVFPQVNVSPENYIGFDFE 169 K VF Q + ++ F Sbjct: 139 DESVAKKGVFAQAVDAIKDAQDRGFR 164 >gi|30064761|ref|NP_838932.1| pyruvate formate lyase II activase [Shigella flexneri 2a str. 2457T] gi|56480491|ref|NP_709752.2| pyruvate formate lyase II activase [Shigella flexneri 2a str. 301] gi|74314454|ref|YP_312873.1| pyruvate formate lyase II activase [Shigella sonnei Ss046] gi|110807808|ref|YP_691328.1| pyruvate formate lyase II activase [Shigella flexneri 5 str. 8401] gi|157154749|ref|YP_001465449.1| pyruvate formate lyase II activase [Escherichia coli E24377A] gi|218697666|ref|YP_002405333.1| pyruvate formate lyase II activase [Escherichia coli 55989] gi|307314720|ref|ZP_07594317.1| glycyl-radical enzyme activating protein family [Escherichia coli W] gi|331670807|ref|ZP_08371643.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme) (Formate-C-acetyltransferase-activating enzyme 2) [Escherichia coli TA271] gi|30043021|gb|AAP18743.1| probable pyruvate formate lyase activating enzyme 2 [Shigella flexneri 2a str. 2457T] gi|56384042|gb|AAN45459.2| probable pyruvate formate lyase activating enzyme 2 [Shigella flexneri 2a str. 301] gi|73857931|gb|AAZ90638.1| probable pyruvate formate lyase activating enzyme 2 [Shigella sonnei Ss046] gi|110617356|gb|ABF06023.1| probable pyruvate formate lyase activating enzyme 2 [Shigella flexneri 5 str. 8401] gi|157076779|gb|ABV16487.1| glycyl-radical enzyme activating protein family [Escherichia coli E24377A] gi|218354398|emb|CAV01179.1| pyruvate formate lyase II activase [Escherichia coli 55989] gi|306905775|gb|EFN36301.1| glycyl-radical enzyme activating protein family [Escherichia coli W] gi|315063287|gb|ADT77614.1| pyruvate formate lyase II activase [Escherichia coli W] gi|320201554|gb|EFW76132.1| Pyruvate formate-lyase activating enzyme [Escherichia coli EC4100B] gi|323380650|gb|ADX52918.1| glycyl-radical enzyme activating protein family [Escherichia coli KO11] gi|324115499|gb|EGC09440.1| glycyl-radical enzyme activating protein family protein [Escherichia coli E1167] gi|331062062|gb|EGI33985.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme) (Formate-C-acetyltransferase-activating enzyme 2) [Escherichia coli TA271] Length = 292 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195 >gi|153835535|ref|ZP_01988202.1| pyruvate formate-lyase 1-activating enzyme [Vibrio harveyi HY01] gi|148867892|gb|EDL67111.1| pyruvate formate-lyase 1-activating enzyme [Vibrio harveyi HY01] Length = 246 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 52/165 (31%), Gaps = 36/165 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT G V+++ + Sbjct: 25 VF--LQGC-----------LMRCKYCHNRDT----WDTHDGKEVTVEEIIAEAKTYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWICVS 134 G +GGE +LQ + +A G ++TNG T + +D Sbjct: 68 NASGGGITCSGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRKHTDVIDEVLD----- 122 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 DL + + +K Q + N DF R L + Sbjct: 123 ---ATDLVMLDLKHMKDEIHQEFIGVSNRRVLDFAR-YLHKIGQK 163 >gi|300896453|ref|ZP_07114982.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 198-1] gi|300359681|gb|EFJ75551.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 198-1] Length = 279 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125 Query: 104 IQALNKRGFEIAVETNG 120 +Q L G A+ET G Sbjct: 126 LQRLRLWGVSCAIETAG 142 >gi|288574329|ref|ZP_06392686.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570070|gb|EFC91627.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 228 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 28/124 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +F R GC + C +C G +G + + + D + + + Sbjct: 22 IFTR--GC-----------TFACPWC---HNGGLLDQGEGLDEEDILDFLRRRIKIIDG- 64 Query: 85 GRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSPK 136 V++GGEP + D+P I + K G I ++TNG++ + +D++ + K Sbjct: 65 ---LVISGGEPTVHEDLPRFISEVRKMGLLIKLDTNGSLPDRLEPLLDEKLVDYVAMDVK 121 Query: 137 AGCD 140 A + Sbjct: 122 APLE 125 >gi|120601418|ref|YP_965818.1| radical SAM domain-containing protein [Desulfovibrio vulgaris DP4] gi|120561647|gb|ABM27391.1| Radical SAM domain protein [Desulfovibrio vulgaris DP4] gi|311235064|gb|ADP87918.1| Radical SAM domain protein [Desulfovibrio vulgaris RCH1] Length = 574 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 43/109 (39%), Gaps = 20/109 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C +C D D G QG K ++D + L E G K + Sbjct: 279 CNL-----------ACVWCSDKDLRGRQGVK-ATLSLDTVRRLTHELREGGTKG--IVIE 324 Query: 91 TGGEPLLQVDVPLIQA-LNKRGFEIAVETNGTIEPPQGI----DWICVS 134 GGEP L D I A + G + TNG + P + DW+ VS Sbjct: 325 GGGEPTLHPDFAAIVACITDAGMGAGLITNGVVTLPPDVLRRLDWVRVS 373 >gi|38704217|ref|NP_312908.2| pyruvate formate lyase II activase [Escherichia coli O157:H7 str. Sakai] gi|189010251|ref|ZP_02805886.2| glycyl-radical enzyme activating protein family [Escherichia coli O157:H7 str. EC4076] gi|189402184|ref|ZP_02780653.2| glycyl-radical enzyme activating protein family [Escherichia coli O157:H7 str. EC4401] gi|189403090|ref|ZP_02793271.2| glycyl-radical enzyme activating protein family [Escherichia coli O157:H7 str. EC4486] gi|189404857|ref|ZP_02811825.2| glycyl-radical enzyme activating protein family [Escherichia coli O157:H7 str. EC869] gi|208809017|ref|ZP_03251354.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7 str. EC4206] gi|209397570|ref|YP_002273474.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7 str. EC4115] gi|217325269|ref|ZP_03441353.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7 str. TW14588] gi|300902607|ref|ZP_07120582.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 84-1] gi|300928731|ref|ZP_07144247.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 187-1] gi|301306407|ref|ZP_07212475.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 124-1] gi|189001611|gb|EDU70597.1| glycyl-radical enzyme activating protein family [Escherichia coli O157:H7 str. EC4076] gi|189357223|gb|EDU75642.1| glycyl-radical enzyme activating protein family [Escherichia coli O157:H7 str. EC4401] gi|189362696|gb|EDU81115.1| glycyl-radical enzyme activating protein family [Escherichia coli O157:H7 str. EC4486] gi|189373223|gb|EDU91639.1| glycyl-radical enzyme activating protein family [Escherichia coli O157:H7 str. EC869] gi|208728818|gb|EDZ78419.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7 str. EC4206] gi|209158970|gb|ACI36403.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7 str. EC4115] gi|217321490|gb|EEC29914.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7 str. TW14588] gi|300405335|gb|EFJ88873.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 84-1] gi|300463256|gb|EFK26749.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 187-1] gi|300838347|gb|EFK66107.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 124-1] gi|315253620|gb|EFU33588.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 85-1] gi|323174307|gb|EFZ59933.1| glycyl-radical enzyme activating family protein [Escherichia coli LT-68] gi|323177977|gb|EFZ63561.1| glycyl-radical enzyme activating family protein [Escherichia coli 1180] Length = 279 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 182 >gi|127513319|ref|YP_001094516.1| pyruvate formate lyase-activating enzyme 1 [Shewanella loihica PV-4] gi|126638614|gb|ABO24257.1| pyruvate formate-lyase activating enzyme [Shewanella loihica PV-4] Length = 246 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 33/122 (27%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F T+ G G RF GC +C++C DT Sbjct: 11 ESFGTVDGPG---------IRFITFMQGC-----------LMRCQYCHNRDT----WDLH 46 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G VD L + I E G +GGE +LQ + L +A +G ++T Sbjct: 47 GGHEIEVDVLMEQIISYRPFLESSGGGVTASGGEAILQAEFVAALFKACKAQGIHTCLDT 106 Query: 119 NG 120 NG Sbjct: 107 NG 108 >gi|302873839|ref|YP_003842472.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|307689916|ref|ZP_07632362.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|302576696|gb|ADL50708.1| Radical SAM domain protein [Clostridium cellulovorans 743B] Length = 460 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 7/78 (8%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104 +C +C F K + N ++ ++I++ G + C ++GGEP+L ++ Sbjct: 132 RCIYC---FNNSGEAKTVQLNTNEWLEVIKQARELGIVK---CTVSGGEPMLHPGFFDIL 185 Query: 105 QALNKRGFEIAVETNGTI 122 +A+ G + + TNG++ Sbjct: 186 RAITDSGMSVYICTNGSL 203 >gi|209695413|ref|YP_002263342.1| pyruvate formate lyase-activating enzyme 1 [Aliivibrio salmonicida LFI1238] gi|208009365|emb|CAQ79638.1| pyruvate formate-lyase 1 activating enzyme [Aliivibrio salmonicida LFI1238] Length = 245 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 25/152 (16%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C +C DT +G +V +L + + Sbjct: 24 IF--LQGC-----------LMRCMYCHNRDT----WDTHEGKEVSVTELIEEAKSYRHFM 66 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139 + G +GGE +LQ + QA G ++TNG I + + A Sbjct: 67 KASGGGITCSGGEAMLQPEFVRDFFQAAQAEGMHTCLDTNGYIRKHTDVVDEVL---AAS 123 Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171 DL + + +K + N DF R+ Sbjct: 124 DLVMLDIKHMKDEIHHDFIGVSNRRTLDFARY 155 >gi|289578845|ref|YP_003477472.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacter italicus Ab9] gi|289528558|gb|ADD02910.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacter italicus Ab9] Length = 228 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 30/158 (18%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 VF SGCN +C +C ++ G + + D ++++ E Sbjct: 19 ATVFI--SGCNF-----------KCPYCHNSYLIQIRE--GIRSEKEFFDYLKKRANLIE 63 Query: 83 KEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS 134 +TGGEP L + I+ F + ++TNG+ +D+I + Sbjct: 64 G----VCITGGEPTLWKGLKDFIKNTKDLNFSVKLDTNGSRPQVLENLIDEGLLDYIAMD 119 Query: 135 PKAGCD---LKIKGGQELKLVFPQVNVSPENYIGFDFE 169 KA + + +K +++ V V + + I ++F Sbjct: 120 IKAPIEKYGIFLKNKKDIDNVQKSVEIIKNSDIAYEFR 157 >gi|237716369|ref|ZP_04546850.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D1] gi|262407971|ref|ZP_06084519.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 2_1_22] gi|294644254|ref|ZP_06722023.1| radical SAM domain protein [Bacteroides ovatus SD CC 2a] gi|294807964|ref|ZP_06766743.1| radical SAM domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229444016|gb|EEO49807.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D1] gi|262354779|gb|EEZ03871.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 2_1_22] gi|292640418|gb|EFF58667.1| radical SAM domain protein [Bacteroides ovatus SD CC 2a] gi|294444848|gb|EFG13536.1| radical SAM domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 205 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 40/112 (35%), Gaps = 21/112 (18%) Query: 11 LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL 70 LT+ GEG F GC L +C++C YN +QL Sbjct: 14 LTIDGEGVTTLVA-----FHGCPL-----------RCKYCLNPTSLQPNGVWESYNCNQL 57 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI---QALNKRGFEIAVETN 119 + + + + GGEPLLQ I + L + I VET+ Sbjct: 58 YEEVRKDELYFLASCGGVTFGGGEPLLQS--EFIRQFRQLCGPEWRITVETS 107 >gi|52549683|gb|AAU83532.1| pyruvate-formate lyase-activating enzyme [uncultured archaeon GZfos30H9] Length = 230 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 37/105 (35%), Gaps = 28/105 (26%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF GCN +C +C + A I E I G E Sbjct: 22 VF--TQGCNF-----------KCPYC---------HNPELVDPKLFAQPIPEADIFGFLE 59 Query: 85 GRY-----CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 R +TGGEP LQ D+ + + F + ++TNG+ Sbjct: 60 TRRGKLDAVEITGGEPTLQPDLIDFTKKIKSLNFLVKLDTNGSNP 104 >gi|261367872|ref|ZP_05980755.1| pyruvate formate-lyase 1-activating enzyme [Subdoligranulum variabile DSM 15176] gi|282570678|gb|EFB76213.1| pyruvate formate-lyase 1-activating enzyme [Subdoligranulum variabile DSM 15176] Length = 255 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 21/110 (19%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +F GC + +C++C + R + + Sbjct: 28 IF--LQGC-----------AMRCQYC----HNPETWAFTRDTEKTPQEAFDAALRYRNYW 70 Query: 85 GRY--CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDW 130 ++GGEPLLQ+D + + +G A++T+G P DW Sbjct: 71 RNNGGLTISGGEPLLQMDFVSEVFRLARAKGIHTALDTSGQPFAPDNADW 120 >gi|191168939|ref|ZP_03030708.1| glycyl-radical enzyme activating protein family [Escherichia coli B7A] gi|193068054|ref|ZP_03049019.1| glycyl-radical enzyme activating protein family [Escherichia coli E110019] gi|300819369|ref|ZP_07099567.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 107-1] gi|300824342|ref|ZP_07104457.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 119-7] gi|190901026|gb|EDV60806.1| glycyl-radical enzyme activating protein family [Escherichia coli B7A] gi|192958674|gb|EDV89112.1| glycyl-radical enzyme activating protein family [Escherichia coli E110019] gi|300523148|gb|EFK44217.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 119-7] gi|300528052|gb|EFK49114.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 107-1] gi|313648844|gb|EFS13283.1| glycyl-radical enzyme activating family protein [Shigella flexneri 2a str. 2457T] gi|323167431|gb|EFZ53139.1| glycyl-radical enzyme activating family protein [Shigella sonnei 53G] Length = 279 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 182 >gi|170022036|ref|YP_001726990.1| pyruvate formate lyase II activase [Escherichia coli ATCC 8739] gi|169756964|gb|ACA79663.1| glycyl-radical enzyme activating protein family [Escherichia coli ATCC 8739] Length = 292 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 139 LQRLQLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195 >gi|56962668|ref|YP_174394.1| molybdenum cofactor biosynthesis protein A [Bacillus clausii KSM-K16] gi|56908906|dbj|BAD63433.1| molybdenum cofactor biosynthesis protein A [Bacillus clausii KSM-K16] Length = 338 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 18/95 (18%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + + +VD++ E+ G K+ R +TG Sbjct: 23 DRCNFRCSYCMPAEVFGPD--HAFMD--ESELLSVDEIVRTAEQFVQLGVKKIR---ITG 75 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEP 124 GEPLL+ +VP LI L+ G E +A+ TNG + P Sbjct: 76 GEPLLRKEVPHLIGRLHAIEGLEDLALTTNGVMLP 110 >gi|269954959|ref|YP_003324748.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Xylanimonas cellulosilytica DSM 15894] gi|269303640|gb|ACZ29190.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Xylanimonas cellulosilytica DSM 15894] Length = 232 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 67/219 (30%), Gaps = 63/219 (28%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G++A VF GC +C +C + + + + G ++ + + + Sbjct: 21 GKLAAVVF--LQGCP-----------WRCVYCHNEEI-LDPREPGTMPWFEVVEFLRRRR 66 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-------PQGIDW 130 + V +GGEPLL +P I + GF + + T G +DW Sbjct: 67 GLLDG----VVFSGGEPLLSKALPTAIGEVRNLGFAVGLHTGGAWPRRLQALLDDGALDW 122 Query: 131 ICVSPK--------------------AGCDLKIKGG--QELKLVF-------PQVNVSPE 161 + + K A + + G E++ P V E Sbjct: 123 VGLDVKHLPERYASVTGVPSSGAAAWASLEAVLASGVSHEVRTTVDPTVHTRPDVVALAE 182 Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRL 200 + +LQ L A + WRL Sbjct: 183 RLAALGVQHHALQEARPDGLAAGHAEAFA------GWRL 215 >gi|258621387|ref|ZP_05716421.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM573] gi|258626814|ref|ZP_05721621.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM603] gi|262171168|ref|ZP_06038846.1| pyruvate formate-lyase activating enzyme [Vibrio mimicus MB-451] gi|258580861|gb|EEW05803.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM603] gi|258586775|gb|EEW11490.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM573] gi|261892244|gb|EEY38230.1| pyruvate formate-lyase activating enzyme [Vibrio mimicus MB-451] Length = 246 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 53/156 (33%), Gaps = 27/156 (17%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT G V+++ + Sbjct: 25 VF--LQGC-----------LFRCKYCHNRDT----WDTHTGREVTVEEIIKEAKSYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI-EPPQGIDWICVSPKAG 138 G +GGE +LQ + +A G ++TNG I + ID + Sbjct: 68 NASGGGVTCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYIRKFTPVIDEVL----EV 123 Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174 DL + +++ Q + N DF R+ Q Sbjct: 124 TDLVMLDIKQMNDEIHQDLIGVSNKRTLDFARYLHQ 159 >gi|29376171|ref|NP_815325.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis V583] gi|227518800|ref|ZP_03948849.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis TX0104] gi|227553414|ref|ZP_03983463.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis HH22] gi|229545774|ref|ZP_04434499.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis TX1322] gi|229549964|ref|ZP_04438689.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis ATCC 29200] gi|255972746|ref|ZP_05423332.1| formate acetyltransferase activating enzyme [Enterococcus faecalis T1] gi|255975798|ref|ZP_05426384.1| formate acetyltransferase activating enzyme [Enterococcus faecalis T2] gi|256619111|ref|ZP_05475957.1| formate acetyltransferase activating enzyme [Enterococcus faecalis ATCC 4200] gi|256762547|ref|ZP_05503127.1| formate acetyltransferase activating enzyme [Enterococcus faecalis T3] gi|256853173|ref|ZP_05558543.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis T8] gi|256959027|ref|ZP_05563198.1| formate acetyltransferase activating enzyme [Enterococcus faecalis DS5] gi|256961880|ref|ZP_05566051.1| formate acetyltransferase activating enzyme [Enterococcus faecalis Merz96] gi|256965078|ref|ZP_05569249.1| formate acetyltransferase activating enzyme [Enterococcus faecalis HIP11704] gi|257079058|ref|ZP_05573419.1| formate acetyltransferase activating enzyme [Enterococcus faecalis JH1] gi|257082503|ref|ZP_05576864.1| formate acetyltransferase activating enzyme [Enterococcus faecalis E1Sol] gi|257085135|ref|ZP_05579496.1| formate acetyltransferase activating enzyme [Enterococcus faecalis Fly1] gi|257086696|ref|ZP_05581057.1| formate acetyltransferase activating enzyme [Enterococcus faecalis D6] gi|257089932|ref|ZP_05584293.1| formate acetyltransferase activating enzyme [Enterococcus faecalis CH188] gi|257416141|ref|ZP_05593135.1| formate acetyltransferase activating enzyme [Enterococcus faecalis AR01/DG] gi|257419343|ref|ZP_05596337.1| formate acetyltransferase activating enzyme [Enterococcus faecalis T11] gi|257422563|ref|ZP_05599553.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis X98] gi|293382946|ref|ZP_06628864.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis R712] gi|293389565|ref|ZP_06634022.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis S613] gi|294781698|ref|ZP_06747033.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis PC1.1] gi|300860342|ref|ZP_07106429.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TUSoD Ef11] gi|307270971|ref|ZP_07552254.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX4248] gi|307273177|ref|ZP_07554423.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0855] gi|307274911|ref|ZP_07556074.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX2134] gi|307278019|ref|ZP_07559103.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0860] gi|307289153|ref|ZP_07569109.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0109] gi|307291949|ref|ZP_07571818.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0411] gi|312899462|ref|ZP_07758792.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0470] gi|312903355|ref|ZP_07762535.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0635] gi|312907583|ref|ZP_07766574.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis DAPTO 512] gi|312910201|ref|ZP_07769048.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis DAPTO 516] gi|312951545|ref|ZP_07770441.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0102] gi|29343634|gb|AAO81395.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis V583] gi|227073795|gb|EEI11758.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis TX0104] gi|227177465|gb|EEI58437.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis HH22] gi|229304877|gb|EEN70873.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis ATCC 29200] gi|229309086|gb|EEN75073.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis TX1322] gi|255963764|gb|EET96240.1| formate acetyltransferase activating enzyme [Enterococcus faecalis T1] gi|255968670|gb|EET99292.1| formate acetyltransferase activating enzyme [Enterococcus faecalis T2] gi|256598638|gb|EEU17814.1| formate acetyltransferase activating enzyme [Enterococcus faecalis ATCC 4200] gi|256683798|gb|EEU23493.1| formate acetyltransferase activating enzyme [Enterococcus faecalis T3] gi|256711632|gb|EEU26670.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis T8] gi|256949523|gb|EEU66155.1| formate acetyltransferase activating enzyme [Enterococcus faecalis DS5] gi|256952376|gb|EEU69008.1| formate acetyltransferase activating enzyme [Enterococcus faecalis Merz96] gi|256955574|gb|EEU72206.1| formate acetyltransferase activating enzyme [Enterococcus faecalis HIP11704] gi|256987088|gb|EEU74390.1| formate acetyltransferase activating enzyme [Enterococcus faecalis JH1] gi|256990533|gb|EEU77835.1| formate acetyltransferase activating enzyme [Enterococcus faecalis E1Sol] gi|256993165|gb|EEU80467.1| formate acetyltransferase activating enzyme [Enterococcus faecalis Fly1] gi|256994726|gb|EEU82028.1| formate acetyltransferase activating enzyme [Enterococcus faecalis D6] gi|256998744|gb|EEU85264.1| formate acetyltransferase activating enzyme [Enterococcus faecalis CH188] gi|257157969|gb|EEU87929.1| formate acetyltransferase activating enzyme [Enterococcus faecalis ARO1/DG] gi|257161171|gb|EEU91131.1| formate acetyltransferase activating enzyme [Enterococcus faecalis T11] gi|257164387|gb|EEU94347.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis X98] gi|291079611|gb|EFE16975.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis R712] gi|291081182|gb|EFE18145.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis S613] gi|294451250|gb|EFG19717.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis PC1.1] gi|300849381|gb|EFK77131.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TUSoD Ef11] gi|306496947|gb|EFM66495.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0411] gi|306499862|gb|EFM69223.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0109] gi|306505416|gb|EFM74602.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0860] gi|306508359|gb|EFM77466.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX2134] gi|306510162|gb|EFM79186.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0855] gi|306512469|gb|EFM81118.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX4248] gi|310626611|gb|EFQ09894.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis DAPTO 512] gi|310630511|gb|EFQ13794.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0102] gi|310633231|gb|EFQ16514.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0635] gi|311289474|gb|EFQ68030.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis DAPTO 516] gi|311293332|gb|EFQ71888.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0470] gi|315027219|gb|EFT39151.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX2137] gi|315029337|gb|EFT41269.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX4000] gi|315034016|gb|EFT45948.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0017] gi|315037025|gb|EFT48957.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0027] gi|315145095|gb|EFT89111.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX2141] gi|315147312|gb|EFT91328.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX4244] gi|315150489|gb|EFT94505.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0012] gi|315152432|gb|EFT96448.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0031] gi|315155705|gb|EFT99721.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0043] gi|315158124|gb|EFU02141.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0312] gi|315160389|gb|EFU04406.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0645] gi|315164062|gb|EFU08079.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX1302] gi|315169778|gb|EFU13795.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX1342] gi|315172257|gb|EFU16274.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX1346] gi|315575819|gb|EFU88010.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0309B] gi|315577659|gb|EFU89850.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0630] gi|315580471|gb|EFU92662.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0309A] gi|323480777|gb|ADX80216.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis 62] gi|327535181|gb|AEA94015.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis OG1RF] gi|329571652|gb|EGG53333.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX1467] Length = 254 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 20/101 (19%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT-G 81 RF GC +C+FC G+ G D++ + G Sbjct: 23 VRFIVFTQGC-----------RMRCQFCHNPDTWKIGSGGRVVTTDEVLEEALRFRSYWG 71 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 EK G ++GGEPLLQ+D + L + +G ++T G Sbjct: 72 EKGG--ITVSGGEPLLQMDFLIDLFKKAKAQGIHTTLDTCG 110 >gi|315168988|gb|EFU13005.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX1341] Length = 254 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 20/101 (19%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT-G 81 RF GC +C+FC G+ G D++ + G Sbjct: 23 VRFIVFTQGC-----------RMRCQFCHNPDTWKIGSGGRVVTTDEVLEEALRFRSYWG 71 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 EK G ++GGEPLLQ+D + L + +G ++T G Sbjct: 72 EKGG--ITVSGGEPLLQMDFLIDLFKKAKAQGIHTTLDTCG 110 >gi|227328163|ref|ZP_03832187.1| pyruvate formate lyase-activating enzyme 1 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 246 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 56/181 (30%), Gaps = 38/181 (20%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F F GC +C +C DT G V++L + Sbjct: 25 IF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKEVVTYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKA 137 G +GGE +LQ + +A G ++TNG ID + VS Sbjct: 68 NASGGGVTASGGEAILQAEFVRDWFRACKAEGINTCLDTNGFVRRYDPVIDELLDVSDLV 127 Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197 DLK Q V N+ DF R+ + N I Y P Sbjct: 128 MLDLKQMNDD-----IHQNLVGVSNHRTLDFARY--------LAKRNQRTWIRYVVV-PG 173 Query: 198 W 198 W Sbjct: 174 W 174 >gi|197335857|ref|YP_002156408.1| pyruvate formate-lyase 1-activating enzyme [Vibrio fischeri MJ11] gi|197317347|gb|ACH66794.1| pyruvate formate-lyase 1-activating enzyme [Vibrio fischeri MJ11] Length = 245 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 53/161 (32%), Gaps = 28/161 (17%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C +C DT G V +L + + Sbjct: 24 VF--LQGC-----------LMRCMYCHNRDT----WDTHDGKEVTVAELIEEAKSYRHFM 66 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQG-IDWICVSPKAG 138 + G +GGE +LQ + +A G ++TNG I ID + Sbjct: 67 KASGGGITCSGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRKHTDVIDEVL----EA 122 Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179 DL + +++K + + N DF R L + Sbjct: 123 SDLVMLDLKQMKDDIHKEFIGVSNTRVLDFAR-YLHKIGQK 162 >gi|327438653|dbj|BAK15018.1| hypothetical protein SSIL_0595 [Solibacillus silvestris StLB046] Length = 299 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C FC T+ G V+Q A +++E + + Sbjct: 15 CNL-----------ACSFCPPTERA------KGLIKVEQFAHILDEISGYTKYIYLHVK- 56 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 57 --GEPLLHPRIGQLLDIAHEKGFKVNITTNGTL 87 >gi|309797156|ref|ZP_07691553.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 145-7] gi|308119235|gb|EFO56497.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 145-7] Length = 279 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATHF 125 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 182 >gi|207722418|ref|YP_002252854.1| ribonucleotide reductase activating protein [Ralstonia solanacearum MolK2] gi|206587597|emb|CAQ18179.1| ribonucleotide reductase activating protein [Ralstonia solanacearum MolK2] Length = 248 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 28/128 (21%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G++A VF +GC +C +C + + Q+ ++ + Sbjct: 46 GQLAAVVFI--AGCP-----------WRCHYC---HNPHLQARERHIHWTQVMAFLQSRR 89 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 + V +GGEPL + +P LI A+ GF+ + T G +DW+ Sbjct: 90 ALLDA----VVFSGGEPLSEPRLPQLIAAVRALGFKTGLHTAGIYPARLAAVLPMLDWVG 145 Query: 133 VSPKAGCD 140 + K Sbjct: 146 LDIKTTAS 153 >gi|300937144|ref|ZP_07152000.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 21-1] gi|300457787|gb|EFK21280.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 21-1] Length = 279 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125 Query: 104 IQALNKRGFEIAVETNG 120 +Q L G A+ET G Sbjct: 126 LQRLRLWGVSCAIETAG 142 >gi|167837250|ref|ZP_02464133.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderia thailandensis MSMB43] Length = 239 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 26/130 (20%) Query: 17 GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 G A VF GC +C +C + + G D L + Sbjct: 26 GQFA--AVVFV--QGCP-----------WRCGYCHNPHLQPRSHPAG-IEWDALLAFLAR 69 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI-----EPPQGIDW 130 + + V +GGEP + + I + + GF+I + + GT +DW Sbjct: 70 RVGLIDA----VVFSGGEPSIDPALAASIGDVRQLGFKIGLHSAGTHPRRLTPLLPSLDW 125 Query: 131 ICVSPKAGCD 140 I + KA D Sbjct: 126 IGLDVKAPFD 135 >gi|331649807|ref|ZP_08350887.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme) (Formate-C-acetyltransferase-activating enzyme 2) [Escherichia coli M605] gi|331041440|gb|EGI13590.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme) (Formate-C-acetyltransferase-activating enzyme 2) [Escherichia coli M605] Length = 315 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 47 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 101 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 102 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 161 Query: 104 IQALNKRGFEIAVETNG 120 +Q L G A+ET G Sbjct: 162 LQRLRLWGVSCAIETAG 178 >gi|331086536|ref|ZP_08335615.1| hypothetical protein HMPREF0987_01918 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410594|gb|EGG90022.1| hypothetical protein HMPREF0987_01918 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 426 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 73/181 (40%), Gaps = 34/181 (18%) Query: 32 CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 CNL +CR C D V + T+ N +QL ++ E+ + V Sbjct: 103 CNL-----------RCRHCCVDAKHVS-EFTEKDELNTEQLKEVFEK---SAALNPEQIV 147 Query: 90 LTGGEPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWI--CVSPKAGCDLKIKG 145 L+GGEP+++ D + L+ L K +I++ TNG + I ++ C+ D+ I G Sbjct: 148 LSGGEPMVRKDFMELLYYLRKHFKNKISLSTNGLLITESNIKYLNNCID---KYDISIDG 204 Query: 146 GQEL-------KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ---N 195 E K VF +V S E + + L M F E + C + + Sbjct: 205 VDEESCSRIRGKGVFKKVIESIELIKKYGDKEIYLSMMFDDFNENLRGEFLQLCKRLGVH 264 Query: 196 P 196 P Sbjct: 265 P 265 >gi|293413394|ref|ZP_06656055.1| pyruvate formate-lyase activating enzyme [Escherichia coli B354] gi|291468142|gb|EFF10640.1| pyruvate formate-lyase activating enzyme [Escherichia coli B354] Length = 292 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNG 120 +Q L G A+ET G Sbjct: 139 LQRLRLWGVSCAIETAG 155 >gi|220905871|ref|YP_002481182.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7425] gi|219862482|gb|ACL42821.1| Radical SAM domain protein [Cyanothece sp. PCC 7425] Length = 324 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 16/101 (15%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R +A+C FCD G + + +++ G +Y TGGEPLL+ DV Sbjct: 13 RCNARCHFCD----IWALEPGKEADFATIQTNLQDLRRLG---VKYVDFTGGEPLLRADV 65 Query: 102 PLI-QALNKRGFEIAVETNGTIEPPQG-------IDWICVS 134 I + + GF ++ TN TI PQ ID++ S Sbjct: 66 EHIYREAKQMGFYTSMTTN-TILYPQKAKQMRGLIDFLNFS 105 >gi|154150933|ref|YP_001404551.1| putative molybdenum cofactor biosynthesis protein A [Candidatus Methanoregula boonei 6A8] gi|153999485|gb|ABS55908.1| putative molybdenum cofactor biosynthesis protein A [Methanoregula boonei 6A8] Length = 296 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 30/120 (25%) Query: 21 GRVAVFCR---FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77 GR R S CNL C +C + + D++ ++ Sbjct: 12 GRPVTNLRISLTSRCNL-----------SCIYC---HAEGEKNPATEMSTDEIIAIMN-- 55 Query: 78 WITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVE----TNGTIEPPQGIDWIC 132 + + R TGGEPL++ D + +I+A + +E TNG + D Sbjct: 56 -VAAKFGIRSIKFTGGEPLIRPDILDIIRA-----VPVGIESSVTTNGILLADMAYDLKT 109 >gi|284165828|ref|YP_003404107.1| molybdenum cofactor biosynthesis protein A [Haloterrigena turkmenica DSM 5511] gi|284015483|gb|ADB61434.1| molybdenum cofactor biosynthesis protein A [Haloterrigena turkmenica DSM 5511] Length = 330 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 13/98 (13%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + C +C DT G + + D + +E + E + TGGE Sbjct: 19 DRCNFDCVYCHNEGLGDTR--GPMDPQDDEMSTDDVVRFLE---VAAEFDVDAVKFTGGE 73 Query: 95 PLL-QVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 P+L Q +I+ E+++ TNGT P + D + Sbjct: 74 PMLRQDLEEIIERTPDS-MEVSLTTNGTFLPGRAPDLV 110 >gi|206896550|ref|YP_002247823.1| putative pyruvate formate-lyase 3-activating enzyme (PFL-activating enzyme 3) (Formate-C-acetyltransferase-activatingenzyme 3) [Coprothermobacter proteolyticus DSM 5265] gi|206739167|gb|ACI18245.1| putative pyruvate formate-lyase 3-activating enzyme (PFL-activating enzyme 3) (Formate-C-acetyltransferase-activatingenzyme 3) [Coprothermobacter proteolyticus DSM 5265] Length = 306 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 6/93 (6%) Query: 34 LWSGREQDRLSAQC-RFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + R Q C +C T + G +V +L +E+ + ++ G TG Sbjct: 80 VVIDRTQCTRCGVCAHYCPTTAWQMVGF---TLSVKELMQELEKDRLYYDQSGGGVTFTG 136 Query: 93 GEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 GEP +Q ++A + G AVET+G + Sbjct: 137 GEPFMQAHFLQHALKACKELGIHTAVETSGFVP 169 >gi|298481369|ref|ZP_06999562.1| pyruvate formate-lyase-activating enzyme [Bacteroides sp. D22] gi|298272573|gb|EFI14141.1| pyruvate formate-lyase-activating enzyme [Bacteroides sp. D22] Length = 205 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 40/112 (35%), Gaps = 21/112 (18%) Query: 11 LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL 70 LT+ GEG F GC L +C++C YN +QL Sbjct: 14 LTIDGEGVTTLVA-----FHGCPL-----------RCKYCLNPTSLQPNGVWESYNCNQL 57 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI---QALNKRGFEIAVETN 119 + + + + GGEPLLQ I + L + I VET+ Sbjct: 58 YEEVRKDELYFLASCGGVTFGGGEPLLQS--EFIRQFRQLCGPEWRITVETS 107 >gi|293376744|ref|ZP_06622966.1| molybdenum cofactor biosynthesis protein A [Turicibacter sanguinis PC909] gi|292644610|gb|EFF62698.1| molybdenum cofactor biosynthesis protein A [Turicibacter sanguinis PC909] Length = 323 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 21/96 (21%) Query: 32 CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 CNL +C +C DT + K G+ + D++ ++ G K+ R Sbjct: 20 CNL-----------RCVYCMEDTTQEFL--PKCGKLSDDEMIRIVTACARLGIKKVR--- 63 Query: 90 LTGGEPLLQVDV-PLIQALNKR-GF-EIAVETNGTI 122 LTGGEPL++ + LI+ ++ G EI + TNGT+ Sbjct: 64 LTGGEPLVRPGIVELIKRIHDIDGIEEIYLTTNGTV 99 >gi|51894040|ref|YP_076731.1| molybdenum cofactor biosynthesis protein A [Symbiobacterium thermophilum IAM 14863] gi|51857729|dbj|BAD41887.1| molybdenum cofactor biosynthesis protein A [Symbiobacterium thermophilum IAM 14863] Length = 329 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 14/112 (12%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 N DR + +C +C G++ G +++ +++ G R +T Sbjct: 10 NYMRISVTDRCNLRCVYC-MPLTGVKLGPHDEYLRYEEILRVVKAAVGLGIDRIR---VT 65 Query: 92 GGEPLL-QVDVPLIQALNKRGFE-IAVETNGTIEPP-------QGIDWICVS 134 GGEPL+ Q V + L G +++ TNG + P G+D + +S Sbjct: 66 GGEPLVRQGIVEFLAQLKPLGVTDLSLSTNGLLFAPMAKDLKAAGVDRVNIS 117 >gi|167041236|gb|ABZ05993.1| putative Radical SAM superfamily protein [uncultured marine microorganism HF4000_001N02] Length = 363 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 15/106 (14%) Query: 41 DRLSAQCRFC-DTDFVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 DR + +C +C + G T R D++ ++ G ++ R +TGGEPL Sbjct: 47 DRCNFRCPYCMPRERFGEDHTFLPRRAFLTFDEIEKVVRACMELGLEKVR---ITGGEPL 103 Query: 97 LQV-DVPLIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134 L+ L+ L+ G ++A+ TNG++ G+ + VS Sbjct: 104 LRPGLDDLMGRLSNLGLDLALTTNGSLLRRNAQALATAGLTRVTVS 149 >gi|307823472|ref|ZP_07653701.1| Radical SAM domain protein [Methylobacter tundripaludum SV96] gi|307735457|gb|EFO06305.1| Radical SAM domain protein [Methylobacter tundripaludum SV96] Length = 366 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 62/162 (38%), Gaps = 28/162 (17%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDVPLI 104 +C FC D++ G K R +V LAD + E G K Y G GEP+L ++ I Sbjct: 51 RCTFCAVDYI---GYKAQRLDVKILADRLAEMGRLGVKSIMYA---GEGEPMLHKEINEI 104 Query: 105 QAL-NKRGFEIAVETNGTI-------EPPQGIDWICVSPKAG-----CDLKIKGGQELKL 151 L G +++ TNGT+ + + WI VS AG + + L Sbjct: 105 VRLTVDAGIDVSFTTNGTLMNSRFVEQSLPLVSWIKVSLNAGSAENYAAIHQTKASDFDL 164 Query: 152 VFPQVNVSPENYIGFDFE-----RFSLQPMDGPFLEENTNLA 188 V + + + + L P EE T LA Sbjct: 165 VLNNLRRAVAHKKAEQLSCTLGAQILLLP---ENREEVTALA 203 >gi|227111995|ref|ZP_03825651.1| pyruvate formate lyase-activating enzyme 1 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 246 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 56/181 (30%), Gaps = 38/181 (20%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F F GC +C +C DT G V++L + Sbjct: 25 IF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKEVVTYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKA 137 G +GGE +LQ + +A G ++TNG ID + VS Sbjct: 68 NASGGGVTASGGEAILQAEFVRDWFRACKAEGINTCLDTNGFVRRYDPVIDELLDVSDLV 127 Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197 DLK Q V N+ DF R+ + N I Y P Sbjct: 128 MLDLKQMNDD-----IHQNLVGVSNHRTLDFARY--------LAKRNQRTWIRYVVV-PG 173 Query: 198 W 198 W Sbjct: 174 W 174 >gi|21227828|ref|NP_633750.1| Heme biosynthesis protein [Methanosarcina mazei Go1] gi|20906239|gb|AAM31422.1| Heme biosynthesis protein [Methanosarcina mazei Go1] Length = 355 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 17/99 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 +GCNL CR D+ I+E G+ Sbjct: 16 TAGCNLNC--------VHCRG-----ASTSSVPADELTTDEAKHFIDEVAGLGK---PIL 59 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 +L+GGEPL + DV + + G + + TNGT+ P+ Sbjct: 60 ILSGGEPLTRSDVFEIARYGTDAGLRVVLATNGTLLTPE 98 >gi|254787842|ref|YP_003075271.1| pyruvate formate-lyase 1-activating enzyme [Teredinibacter turnerae T7901] gi|237686841|gb|ACR14105.1| pyruvate formate-lyase 1-activating enzyme [Teredinibacter turnerae T7901] Length = 265 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C +C D+ G Y+V ++ + + Sbjct: 40 VF--LQGC-----------QFRCLYCHNRDS----WDLHAGSLYSVQEVIEQVLPFAGFL 82 Query: 82 EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 + ++GGE LLQ L + L K GF ++TNG Sbjct: 83 QSSNGGVTVSGGEALLQWEFLTLLFKQLKKLGFNTCLDTNG 123 >gi|78224019|ref|YP_385766.1| radical SAM family protein [Geobacter metallireducens GS-15] gi|78195274|gb|ABB33041.1| Radical SAM [Geobacter metallireducens GS-15] Length = 332 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + DT + Q+ L E E +T Sbjct: 38 CNLACSGCGRIRE----YADT--------------IQQMMSLEECLRSVDECPAPVVTIT 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEP L + LI A+ RG + + TNG + + ++ I V P ++ + G +E Sbjct: 80 GGEPFLYSHIYELIPAVLNRGKHVYLCTNG-LLLEKALENIKVHPNFYLNVHMDGLEE 136 >gi|115360432|ref|YP_777569.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria AMMD] gi|115285760|gb|ABI91235.1| GTP cyclohydrolase subunit MoaA [Burkholderia ambifaria AMMD] Length = 372 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 25/142 (17%) Query: 41 DRLSAQCRFC---DT---DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 D+ + +C +C D+ D+ + + R + QL + G ++ R LTGGE Sbjct: 48 DQCNFRCGYCMPRDSFGPDYAFMPSS--ERLSFAQLEKIARAFISLGVEKIR---LTGGE 102 Query: 95 PLLQVDVP-LIQALN------KRGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ ++ LI+ L + EIA+ TNG++ G+ + VS A D Sbjct: 103 PLLRRNLEALIERLATLTTLDGKPVEIALTTNGSLLAAKARSLRDAGLSRVTVSLDAIDD 162 Query: 141 LKIKGGQELKLVFPQVNVSPEN 162 + + + +V E Sbjct: 163 AVFRRMSDADVPVARVLAGIEA 184 >gi|313899548|ref|ZP_07833057.1| glycyl-radical enzyme activating protein family protein [Clostridium sp. HGF2] gi|312955655|gb|EFR37314.1| glycyl-radical enzyme activating protein family protein [Clostridium sp. HGF2] Length = 306 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 48/155 (30%), Gaps = 50/155 (32%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-----------CRFCDT------ 52 F T GEG +F GC L Q+ C C + Sbjct: 14 FATHDGEGIRT---TIF--LKGCPLRCAWCQNPEGLHPVLQLLYMETKCMHCGSCAAAAI 68 Query: 53 ----------------DFVGIQG------TKGGRYNVD--QLADLIEEQWITGE--KEGR 86 +G T RY+ ++D++ E + G Sbjct: 69 HGGVSMQDGRIKLVRDAVEDWEGLIDICPTGALRYDASCYDVSDILREVKKDRAFFRYGG 128 Query: 87 YCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119 L+GGEPLLQ D L ++A G +ET+ Sbjct: 129 GVTLSGGEPLLQADFALEILKACKAEGIHTTIETS 163 >gi|291517950|emb|CBK73171.1| pyruvate formate-lyase 1-activating enzyme [Butyrivibrio fibrisolvens 16/4] Length = 244 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 7/90 (7%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPL 103 +C FC +G +G ++ D+L K G ++GGEPLLQ+D + L Sbjct: 34 RCAFCHNPETWKEG-QGQQFTADELLKKALRFKPY-WKNGGGITVSGGEPLLQIDFVLDL 91 Query: 104 IQALNKRGFEIAVETNG---TIEPPQGIDW 130 + +G ++T G T + P W Sbjct: 92 FKKAKAQGINTCIDTAGQPFTHDEPFYSKW 121 >gi|253688115|ref|YP_003017305.1| pyruvate formate-lyase activating enzyme [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754693|gb|ACT12769.1| pyruvate formate-lyase activating enzyme [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 246 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 56/181 (30%), Gaps = 38/181 (20%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F F GC +C +C DT G V++L + Sbjct: 25 IF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKEVVTYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKA 137 G +GGE +LQ + +A G ++TNG ID + VS Sbjct: 68 NASGGGVTASGGEAILQAEFVRDWFRACKAEGINTCLDTNGFVRRYDPVIDELLDVSDLV 127 Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197 DLK Q V N+ DF R+ + N I Y P Sbjct: 128 MLDLKQMNDD-----IHQNLVGVSNHRTLDFARY--------LAKRNQRTWIRYVVV-PG 173 Query: 198 W 198 W Sbjct: 174 W 174 >gi|226310331|ref|YP_002770225.1| hypothetical protein BBR47_07440 [Brevibacillus brevis NBRC 100599] gi|226093279|dbj|BAH41721.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 291 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90 CNL C FC +G + V+ A ++E + + Sbjct: 15 CNL-----------ACTFC------PPTERGKSFIKVEDFAKRLDEIKPHTDYIYLHVK- 56 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 57 --GEPLLHPKIDELLDISHEKGFKVNITTNGTL 87 >gi|114563644|ref|YP_751157.1| pyruvate formate lyase-activating enzyme 1 [Shewanella frigidimarina NCIMB 400] gi|114334937|gb|ABI72319.1| pyruvate formate-lyase activating enzyme [Shewanella frigidimarina NCIMB 400] Length = 245 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 63/203 (31%), Gaps = 46/203 (22%) Query: 1 MKLYSI--KEIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFC---D 51 M L I E F T+ G G R GC +C++C D Sbjct: 1 MTLGRIHSVESFGTVDGPG---------IRYIAFMQGC-----------LMRCQYCHNRD 40 Query: 52 TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNK 109 T G +VD++ + E G +GGE +LQ L +A Sbjct: 41 T----WDLDGGKEVSVDEIMSQVISYQPFLEASGGGITASGGEAILQAQFVSELFKACKS 96 Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169 +G ++TNG + + + D + + L Q++ + + Sbjct: 97 QGVHTCLDTNGFVRKYEPV----------IDELLDNTDLVLLDIKQMDDAKHIELTKVSN 146 Query: 170 RFSLQPMDGPFLEENTNLAISYC 192 +LQ N I Y Sbjct: 147 HRTLQFA-QYLATRNIKTWIRYV 168 >gi|219853617|ref|YP_002470739.1| hypothetical protein CKR_0274 [Clostridium kluyveri NBRC 12016] gi|219567341|dbj|BAH05325.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 266 Score = 48.1 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 29/122 (23%) Query: 21 GRVA-VFCRFSGCNLWSGREQDRLSAQCRFC----DTDFV--------GIQGTKGGRYNV 67 G +F F GC +C +C + G + G +Y + Sbjct: 26 GVRTTIF--FKGCP-----------IRCMWCHNPESQKYKPEVMKNRDGKEEMIGKQYTI 72 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIAVETNGTIEP 124 QL +++ I ++ G L+GGE + Q L++ ++ G + ++T G + P Sbjct: 73 KQLVKIVQADQIFYDQSGGGVTLSGGEVMTQDMDYIEELVKEFHRIGISVVIDTCGVVPP 132 Query: 125 PQ 126 Sbjct: 133 SN 134 >gi|52549916|gb|AAU83765.1| pyruvate-formate lyase-activating enzyme [uncultured archaeon GZfos33H6] Length = 230 Score = 48.1 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 18/100 (18%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF GCN +C +C + ++ I T + Sbjct: 22 VF--TQGCNF-----------KCPYC----HNPELVDPKLFSHPIPEADIFAFLQTRRGK 64 Query: 85 GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 +TGGEP LQ D+ + + F + ++TNG+ Sbjct: 65 LDAVEITGGEPTLQPDLIDFTKKIKSLNFLVKLDTNGSNP 104 >gi|330446644|ref|ZP_08310296.1| pyruvate formate-lyase 1-activating enzyme [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490835|dbj|GAA04793.1| pyruvate formate-lyase 1-activating enzyme [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 246 Score = 48.1 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 52/160 (32%), Gaps = 35/160 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT G VD+L + Sbjct: 25 VF--LQGC-----------LMRCQYCHNRDT----WDTHGGREATVDELMHEAKSYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWICVS 134 G +GGE +LQ + +A G ++TNG T + +D Sbjct: 68 NSSGGGVTASGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRKHTDVIDEVLD----- 122 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174 DL + +++ Q V N DF R+ Q Sbjct: 123 ---ATDLVMLDLKQMDDSIHQNLVGVPNKRVLDFARYLHQ 159 >gi|313884260|ref|ZP_07818026.1| pyruvate formate-lyase 1-activating enzyme [Eremococcus coleocola ACS-139-V-Col8] gi|312620707|gb|EFR32130.1| pyruvate formate-lyase 1-activating enzyme [Eremococcus coleocola ACS-139-V-Col8] Length = 256 Score = 48.1 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 49/125 (39%), Gaps = 38/125 (30%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC L +C FC DT Sbjct: 15 TESFGSVDGPG---------IRFVTFMQGCRL-----------RCEFCHNPDT----WNT 50 Query: 60 TKGGRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIA 115 G Y QL + I+ + GEK G ++GGEP+LQ+D LI+ + G Sbjct: 51 FGGHEYTAQQLFDEAIKYRAFWGEKGG--VTVSGGEPMLQIDF-LIEYFKICKEHGVNTT 107 Query: 116 VETNG 120 ++T G Sbjct: 108 LDTCG 112 >gi|300087564|ref|YP_003758086.1| radical SAM domain-containing protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527297|gb|ADJ25765.1| Radical SAM domain protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 392 Score = 48.1 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL ++ C Q + I+ E + + Sbjct: 46 CNLHCIHCYASATSNCS-------------PEEVTTGQAKEFIK---GLAEFGVPVLLFS 89 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ D+ L G +A+ TNGT+ Sbjct: 90 GGEPLLRDDLFELASFARDNGLRVALSTNGTL 121 >gi|313904097|ref|ZP_07837477.1| glycyl-radical enzyme activating protein family [Eubacterium cellulosolvens 6] gi|313471246|gb|EFR66568.1| glycyl-radical enzyme activating protein family [Eubacterium cellulosolvens 6] Length = 291 Score = 47.7 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 G D++ D + + E G L+GGEPL+Q D ++Q G +ET Sbjct: 101 GKEMTADEVLDEVLKDRAFYETSGGGITLSGGEPLMQPDFACEILQKAAAAGIHRTIETC 160 Query: 120 G 120 G Sbjct: 161 G 161 >gi|257869695|ref|ZP_05649348.1| pyruvate formate-lyase activating enzyme [Enterococcus gallinarum EG2] gi|257803859|gb|EEV32681.1| pyruvate formate-lyase activating enzyme [Enterococcus gallinarum EG2] Length = 251 Score = 47.7 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 43/121 (35%), Gaps = 30/121 (24%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 E F ++ G G RF GC +C FC G Sbjct: 10 TESFGSVDGPG---------IRFIVFMQGC-----------RMRCEFCHNPDTWKIGAGI 49 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETN 119 R D L + ++ + GEK G +GGEPLLQ+D LI G ++T Sbjct: 50 ERTTDDVLEEALKYREFWGEKGGLTV--SGGEPLLQLDF-LIDLFRKAKAAGVNTTLDTC 106 Query: 120 G 120 G Sbjct: 107 G 107 >gi|261821276|ref|YP_003259382.1| pyruvate formate lyase-activating enzyme 1 [Pectobacterium wasabiae WPP163] gi|261605289|gb|ACX87775.1| pyruvate formate-lyase activating enzyme [Pectobacterium wasabiae WPP163] Length = 246 Score = 47.7 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 56/181 (30%), Gaps = 38/181 (20%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F F GC +C +C DT G V++L + Sbjct: 25 IF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKEVVTYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKA 137 G +GGE +LQ + +A G ++TNG ID + VS Sbjct: 68 NASGGGVTASGGEAILQAEFVRDWFRACKAEGINTCLDTNGFVRRYDPVIDELLDVSDLV 127 Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197 DLK Q V N+ DF R+ + N I Y P Sbjct: 128 MLDLKQMNDD-----IHQNLVGVSNHRTLDFARY--------LAKRNQRTWIRYVVV-PG 173 Query: 198 W 198 W Sbjct: 174 W 174 >gi|148381163|ref|YP_001255704.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A str. ATCC 3502] gi|153930820|ref|YP_001385538.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A str. ATCC 19397] gi|153935264|ref|YP_001388944.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A str. Hall] gi|148290647|emb|CAL84776.1| formate-lyase activating enzyme [Clostridium botulinum A str. ATCC 3502] gi|152926864|gb|ABS32364.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A str. ATCC 19397] gi|152931178|gb|ABS36677.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A str. Hall] Length = 232 Score = 47.7 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 23/101 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G + D++ + Sbjct: 22 VF--FQGC-----------QLRCVYCHNPDT----WDFNAGIEISSDEVLKKVLRYKPY- 63 Query: 82 EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 K+ +GGEPL+Q + +++ + A++T+G Sbjct: 64 FKQVGGITCSGGEPLMQPEFLLEILKKCKNQSIHTALDTSG 104 >gi|153952959|ref|YP_001393724.1| glycyl radical activating protein [Clostridium kluyveri DSM 555] gi|146345840|gb|EDK32376.1| Predicted glycyl radical enzyme activator [Clostridium kluyveri DSM 555] Length = 258 Score = 47.7 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 29/122 (23%) Query: 21 GRVA-VFCRFSGCNLWSGREQDRLSAQCRFC----DTDFV--------GIQGTKGGRYNV 67 G +F F GC +C +C + G + G +Y + Sbjct: 18 GVRTTIF--FKGCP-----------IRCMWCHNPESQKYKPEVMKNRDGKEEMIGKQYTI 64 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIAVETNGTIEP 124 QL +++ I ++ G L+GGE + Q L++ ++ G + ++T G + P Sbjct: 65 KQLVKIVQADQIFYDQSGGGVTLSGGEVMTQDMDYIEELVKEFHRIGISVVIDTCGVVPP 124 Query: 125 PQ 126 Sbjct: 125 SN 126 >gi|20090379|ref|NP_616454.1| hypothetical protein MA1520 [Methanosarcina acetivorans C2A] gi|19915387|gb|AAM04934.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 219 Score = 47.7 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 28/150 (18%) Query: 41 DRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GE 94 +R SA C FC D + G +++ + +E ++ +E V TG GE Sbjct: 29 NRCSADCVFCIRNFADGVY-GYDLRLSKEPTTEEILEALEGLDLSNYRE---VVFTGLGE 84 Query: 95 PLLQVDVPL--IQALNKRGFEIAVETNGTIEPP------------QGIDWICVSPKAGCD 140 P L+ DV L + L RG + ++TNG G+D+I VS A + Sbjct: 85 PTLRFDVVLAVTRWLKSRGIRVRLDTNGHAALINPELDVVSELKNAGMDFISVSLNAESE 144 Query: 141 LKIKGGQEL-KLVFPQVNVSPENYIGFDFE 169 K +L + V +++ E Sbjct: 145 EKY---NKLCRPVHKNAYREILDFVKKAGE 171 >gi|312792558|ref|YP_004025481.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312877157|ref|ZP_07737127.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796057|gb|EFR12416.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Caldicellulosiruptor lactoaceticus 6A] gi|312179698|gb|ADQ39868.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 231 Score = 47.7 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 28/152 (18%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 F GCN C FC + G + D + E + Sbjct: 23 FGGCNF-----------SCPFC---YNSQLVNFKGSFMDDSI---FFEYLDKRKGIVDAV 65 Query: 89 VLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGC 139 +TGGEP L I+ + R + ++TNG+ +D++ + KA Sbjct: 66 CITGGEPTLNEEYLTEFIKKIKNRSLLVKLDTNGSRPEVLQRLLDAGLLDYVAMDVKAPL 125 Query: 140 D--LKIKGGQELKLVFPQVNVSPENYIGFDFE 169 + +I G ++ + V + + I ++F Sbjct: 126 EKYPQITGFSDIDKIKKSVEILKNSNIDYEFR 157 >gi|238019931|ref|ZP_04600357.1| hypothetical protein VEIDISOL_01807 [Veillonella dispar ATCC 17748] gi|237863455|gb|EEP64745.1| hypothetical protein VEIDISOL_01807 [Veillonella dispar ATCC 17748] Length = 258 Score = 47.7 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 28/114 (24%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEK 83 VF GC + +C +C + + + V++L D E Sbjct: 23 VF--LQGCPM-----------RCAYCHNPDTWNETSDDAKFMTVEELWDQYERNRQFYTN 69 Query: 84 EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP 135 G +TGGE L+Q+D L +R ++T+G IC P Sbjct: 70 GG--ITVTGGEALMQIDFVTELFTYFRERNVHTCLDTSG----------ICFDP 111 >gi|167760148|ref|ZP_02432275.1| hypothetical protein CLOSCI_02520 [Clostridium scindens ATCC 35704] gi|167662273|gb|EDS06403.1| hypothetical protein CLOSCI_02520 [Clostridium scindens ATCC 35704] Length = 288 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 7/104 (6%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG---RYNVDQLADLIEEQWITG--EKEGR 86 C + RE A C C+ Q G Y + + ++I E +G Sbjct: 57 CPHHAIREHKVDRAICDSCEGKECIRQHDTKGMYLSYKEETVEEVIGEACANEMMFYDGG 116 Query: 87 YCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGI 128 TGGE +Q ++ L ++ A+ETNGT + Sbjct: 117 GVTFTGGEATVQFQELTDALKGLKEKDIHTAIETNGTHPRLPEL 160 >gi|260772500|ref|ZP_05881416.1| pyruvate formate-lyase activating enzyme [Vibrio metschnikovii CIP 69.14] gi|260611639|gb|EEX36842.1| pyruvate formate-lyase activating enzyme [Vibrio metschnikovii CIP 69.14] Length = 246 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 37/159 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G +V+++ + Sbjct: 21 IRFILFLQGC-----------LFRCKYCHNRDT----WDTHSGKEVSVEEIIKEAKSYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWIC 132 G +GGE +LQ + + +A G ++TNG T + +D Sbjct: 66 FMNASGGGITCSGGESMLQPEFVRDVFRAAKAEGIHTCLDTNGYIRKYTPVIDEVLDV-- 123 Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171 DL + +++K Q + N DF R+ Sbjct: 124 ------TDLVLLDIKQIKDDVHQDLIGVSNKRTLDFARY 156 >gi|256752118|ref|ZP_05492985.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacter ethanolicus CCSD1] gi|256749027|gb|EEU62064.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacter ethanolicus CCSD1] Length = 136 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 27/126 (21%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 VF SGCN +C +C ++ G + + D ++++ E Sbjct: 19 ATVFV--SGCNF-----------KCPYCHNSYLIQIRE--GIRSEKEFFDYLKKRANLIE 63 Query: 83 KEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS 134 +TGGEP L + I+ + FE+ ++TNG+ +D+I + Sbjct: 64 G----VCITGGEPTLWKGLKDFIKNIKDLNFEVKLDTNGSRPQVLENLLDEGLLDYIAMD 119 Query: 135 PKAGCD 140 KA + Sbjct: 120 IKAPIE 125 >gi|269121318|ref|YP_003309495.1| pyruvate formate-lyase activating enzyme [Sebaldella termitidis ATCC 33386] gi|268615196|gb|ACZ09564.1| pyruvate formate-lyase activating enzyme [Sebaldella termitidis ATCC 33386] Length = 241 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 25/103 (24%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C +C DT K ++ I + Sbjct: 19 IRFVLFLQGCPL-----------RCLYCHNVDT---WDLKNKKYMLTPEETMHEIS--KV 62 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 G + ++GGEPLLQ + + L + + A++T+G Sbjct: 63 RGFIKSGGLTVSGGEPLLQPEFILELFKLCREEKIHTAIDTSG 105 >gi|300694473|ref|YP_003750446.1| ribonucleotide reductase activating transmembrane protein (nrdg) [Ralstonia solanacearum PSI07] gi|299076510|emb|CBJ35835.1| putative ribonucleotide reductase activating transmembrane protein (nrdG) [Ralstonia solanacearum PSI07] Length = 248 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 28/128 (21%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G++A VF +GC +C +C + ++ R + Q+ ++ + Sbjct: 46 GQLAAVVFI--AGCP-----------WRCHYCHNPHLQLRE---RRLHWTQVMAFLQRRR 89 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 + V +GGEPL + +P LI A+ + GF+ + T G +DW+ Sbjct: 90 TLLDA----VVFSGGEPLSEPRLPQLIAAVRELGFKAGLHTGGIYPARLAAVLPMLDWVG 145 Query: 133 VSPKAGCD 140 + K Sbjct: 146 LDIKTTAS 153 >gi|298674278|ref|YP_003726028.1| radical SAM domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298287266|gb|ADI73232.1| Radical SAM domain protein [Methanohalobium evestigatum Z-7303] Length = 399 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + D D+ T G+ +D LA+ + + Sbjct: 50 CNLKCAHCYAQSQ------DIDYSDELTTNEGKELIDDLAE----------FGSPVILFS 93 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122 GGEPL+ L++ +G + TNGT+ Sbjct: 94 GGEPLMRHDLFELVRYARSKGIRAVISTNGTL 125 >gi|295099948|emb|CBK89037.1| glycyl-radical enzyme activating protein family [Eubacterium cylindroides T2-87] Length = 298 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 6/90 (6%) Query: 37 GREQDRLSAQCRFCDTDFVGIQ----GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 E C+ C+T G ++++ ++ + + ++G Sbjct: 71 DPEFKWNPQTCQHCNTCVENCPLEALEFSGKSMEIEEIVKIVLKDIDYYKNSQGGVTISG 130 Query: 93 GEPLLQ--VDVPLIQALNKRGFEIAVETNG 120 GE +Q + L++ L K +A+ET G Sbjct: 131 GEAFVQFDALIELLKTLKKHDLHVAIETTG 160 >gi|308271162|emb|CBX27771.1| hypothetical protein N47_C18290 [uncultured Desulfobacterium sp.] Length = 230 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 68/188 (36%), Gaps = 37/188 (19%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +F SGCN C +C + + N + E ++ Sbjct: 22 IF--TSGCNF-----------ACPYC-------HNPELAKNNPSVILKETEIYDFLKNRK 61 Query: 85 GRY--CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVS 134 V++GGEP + + + + + G+ + ++TNG+ + ID+I + Sbjct: 62 NFLDGVVISGGEPTIHSGIYAVCKNIKAIGYPVKLDTNGSNPEVIKNLIEKELIDYIAMD 121 Query: 135 PKAG---CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP-MDGPFLEENTNL--- 187 K K + + + + I ++F S++P +D +E+ + + Sbjct: 122 IKTDPNRYSYFTKSASVSANILSSIQIIMNSKIDYEFRTTSVKPFVDVSVIEKISKIIAG 181 Query: 188 AISYCFQN 195 A Y Q+ Sbjct: 182 ANRYVLQH 189 >gi|256376543|ref|YP_003100203.1| pyruvate formate-lyase activating enzyme [Actinosynnema mirum DSM 43827] gi|255920846|gb|ACU36357.1| pyruvate formate-lyase activating enzyme [Actinosynnema mirum DSM 43827] Length = 281 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 16/98 (16%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF SGC L +C +C + G +++ E + Sbjct: 64 VF--TSGCPL-----------RCLYCQNPETW-KMRDGTVVTAEEIMAEAEPYRRFIQVA 109 Query: 85 GRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G ++GGEPLLQ L + + G A++T+G Sbjct: 110 GGGFTVSGGEPLLQPVFTGELFRRAKEWGMHTALDTSG 147 >gi|291556337|emb|CBL33454.1| Pyruvate-formate lyase-activating enzyme [Eubacterium siraeum V10Sc8a] Length = 237 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 19/125 (15%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 RF GC L G + + + G V + + + Sbjct: 19 VRFVLFLQGCPLRCGYCHNPETR------------DASGGKTATVKDVMEKVLRCRNYFG 66 Query: 83 KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140 K G ++GGEPL+Q L + ++G ++T+G I + + V+ D Sbjct: 67 KNGG-ITVSGGEPLMQAKFVTELFKECKRQGINTCLDTSGCIMNDDVTELLKVTDLCMLD 125 Query: 141 LKIKG 145 +K+ Sbjct: 126 IKMTN 130 >gi|116749858|ref|YP_846545.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116698922|gb|ABK18110.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB] Length = 347 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR C + +D+ + ++ E V T Sbjct: 20 CNL-----------RCRHC---ASSAGEARSNELTLDEALAICDQLPPLLVLE---VVFT 62 Query: 92 GGEPLLQVDVPLI-QALNKRGFEIAVETNGTI 122 GGEPLL I + L + G + V TNGT+ Sbjct: 63 GGEPLLSPHWEAIARRLRELGIHVGVVTNGTL 94 >gi|303243865|ref|ZP_07330205.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1] gi|302485801|gb|EFL48725.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1] Length = 212 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 17/103 (16%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLI 104 C +C ++ T +++ + I+ + V++GGEP LQ L Sbjct: 3 CGYCHNYEHMLENTH--EMTPEEVFNSIDLMFAEA------IVISGGEPTLQPKALKELC 54 Query: 105 QALNKRGFEIAVETNGT-IEPPQG------IDWICVSPKAGCD 140 ++GF + ++TNGT IE + ID+I + K D Sbjct: 55 IIAKRKGFPVKLDTNGTNIEIIKDLIDNKLIDYIALDVKCAFD 97 >gi|282855537|ref|ZP_06264856.1| pyruvate formate-lyase 1-activating enzyme [Pyramidobacter piscolens W5455] gi|282586680|gb|EFB91929.1| pyruvate formate-lyase 1-activating enzyme [Pyramidobacter piscolens W5455] Length = 286 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 27/112 (24%) Query: 7 KEIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G +F F GC + +CR+C DT G Sbjct: 17 TESFGSVDGPGVRFV----IF--FKGC-----------AMRCRYCHNPDT----WGCRGG 55 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114 +L D E KEG ++GGEPLLQ+D L++ + + Sbjct: 56 ELKTAAELLDRAERYRSYWGKEGG-ITVSGGEPLLQIDF-LLELFREAKKRV 105 >gi|210134970|ref|YP_002301409.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori P12] gi|226704820|sp|B6JM01|MOAA_HELP2 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|210132938|gb|ACJ07929.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori P12] Length = 321 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 61/172 (35%), Gaps = 27/172 (15%) Query: 46 QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102 +C++C T G +D + + ++ G K+ R +TGGEPLL+ Sbjct: 24 RCQYCMPATPLDFFDGE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDE 78 Query: 103 LIQALNKRGFEIA--VETNGTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQELK 150 I L+ E+A + TNG + D + V S K+ LKI LK Sbjct: 79 FIAKLHAYNKEVALVLSTNGFLLKKMAKDLKNAGLSRVNVSLDSLKSDRVLKISQKDALK 138 Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202 + S + + M +E L + Y R+ + Sbjct: 139 NALEGIEESLKVGLKLKLNTVV---MKSVNDDEILEL-LEYAKNR---RIQI 183 >gi|39995791|ref|NP_951742.1| radical SAM domain-containing protein [Geobacter sulfurreducens PCA] gi|39982555|gb|AAR34015.1| radical SAM domain protein [Geobacter sulfurreducens PCA] Length = 332 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + DT + Q+ L E E +T Sbjct: 38 CNLACSGCGRIRE----YADT--------------IQQMMSLEECLRSVDECPAPVVTIT 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEP L + LI + RG + + TNG + + ++ + V P ++ + G +E Sbjct: 80 GGEPFLYTHIYELIPEVLDRGKHVYLCTNG-LLLEKALENVKVHPNFYLNVHMDGLEE 136 >gi|315925679|ref|ZP_07921888.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter alactolyticus ATCC 23263] gi|315620997|gb|EFV00969.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter alactolyticus ATCC 23263] Length = 262 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 21/98 (21%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDF--------VGIQGTKGGRYNVDQLADLIEEQWITGE 82 GC+L +C +C T T G V+++ + + Sbjct: 36 GCHL-----------RCAWCSTPESQPFEIQTTAEDQTYGEVMTVEEVLKEVRKDIPFYF 84 Query: 83 KEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118 G ++GGE + Q D L+Q K G A+ET Sbjct: 85 HSGGGMTVSGGEMMAQPDFARCLLQQAQKEGINTAIET 122 >gi|302870990|ref|YP_003839626.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Caldicellulosiruptor obsidiansis OB47] gi|302573849|gb|ADL41640.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Caldicellulosiruptor obsidiansis OB47] Length = 231 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 55/153 (35%), Gaps = 30/153 (19%) Query: 29 FSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 F GCN C FC ++ V +G ++ E + Sbjct: 23 FGGCNF-----------SCPFCYNSQLVNFKGEFMDD-------NIFFEYLDKRKGIVDA 64 Query: 88 CVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAG 138 +TGGEP L I+ + R + ++TNG+ +D++ + KA Sbjct: 65 VCITGGEPTLNEEYLTEFIKKIKNRSLLVKLDTNGSRPEVLQRLLDAGLLDYVAMDVKAP 124 Query: 139 CD--LKIKGGQELKLVFPQVNVSPENYIGFDFE 169 + +I G ++ + + + + I ++F Sbjct: 125 LEKYPQITGFSDVDKIRRSIEILKNSNIDYEFR 157 >gi|298504799|gb|ADI83522.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase, DUF3463-containing [Geobacter sulfurreducens KN400] Length = 332 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + DT + Q+ L E E +T Sbjct: 38 CNLACSGCGRIRE----YADT--------------IQQMMSLEECLRSVDECPAPVVTIT 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEP L + LI + RG + + TNG + + ++ + V P ++ + G +E Sbjct: 80 GGEPFLYTHIYELIPEVLDRGKHVYLCTNG-LLLEKALENVKVHPNFYLNVHMDGLEE 136 >gi|195541979|gb|ACF98177.1| putative heme D1 biosynthesis protein NirJ [uncultured bacterium 2303] Length = 412 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + D DF G T +D L +L+ Sbjct: 36 CNLACQHCYSISA------DVDFPGELATPDIYRTMDDL----------KAFGVPVLILS 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL D+ + Q GF + + TNGT+ Sbjct: 80 GGEPLLHPDIFAISQRAKAMGFYVGLSTNGTL 111 >gi|22297770|ref|NP_681017.1| pyruvate formate lyase activating enzyme [Thermosynechococcus elongatus BP-1] gi|22293947|dbj|BAC07779.1| pyruvate formate lyase activating enzyme [Thermosynechococcus elongatus BP-1] Length = 254 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 24/123 (19%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC L +C +C D + +G VD+L I+ Sbjct: 38 IF--TQGCPL-----------RCLYCHNPD----CREPHQGKLVTVDELIADIQHYQSYL 80 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139 + G +GGEPL+Q + + + ++ G A++T+G + + V+ Sbjct: 81 RQGG--VTASGGEPLMQPEFVREIFERCHELGLHTALDTSGYVLLEAAKPVVAVTDLVLL 138 Query: 140 DLK 142 D+K Sbjct: 139 DIK 141 >gi|281420400|ref|ZP_06251399.1| pyruvate formate-lyase 1-activating enzyme [Prevotella copri DSM 18205] gi|281405545|gb|EFB36225.1| pyruvate formate-lyase 1-activating enzyme [Prevotella copri DSM 18205] Length = 248 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 34/121 (28%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F ++ G G RF GC + +C+FC D+ G+ Sbjct: 15 ESFGSVDGPG---------IRFLIFLQGCPM-----------RCQFCHNPDSWKTGV--- 51 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 G ++ D L D E + ++GGE L+Q+D + L + ++RG ++T Sbjct: 52 -GEEWSADDLLDKAERFKSY-WGDKGGITVSGGEALMQIDFLIELFEKAHQRGINTCLDT 109 Query: 119 N 119 + Sbjct: 110 S 110 >gi|207738919|ref|YP_002257312.1| ribonucleotide reductase activating protein [Ralstonia solanacearum IPO1609] gi|206592290|emb|CAQ59196.1| ribonucleotide reductase activating protein [Ralstonia solanacearum IPO1609] Length = 222 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 28/128 (21%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G++A VF +GC +C +C + + Q+ ++ + Sbjct: 20 GQLAAVVFI--AGCP-----------WRCHYC---HNPHLQARERHLHWTQVMAFLQSRR 63 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 + V +GGEPL + +P LI A+ GF+ + T G +DW+ Sbjct: 64 ALLDA----VVFSGGEPLSEPRLPQLIAAVRALGFKTGLHTAGIYPARLAAVLPMLDWVG 119 Query: 133 VSPKAGCD 140 + K Sbjct: 120 LDIKTTAS 127 >gi|303231037|ref|ZP_07317779.1| pyruvate formate-lyase 1-activating enzyme [Veillonella atypica ACS-049-V-Sch6] gi|302514301|gb|EFL56301.1| pyruvate formate-lyase 1-activating enzyme [Veillonella atypica ACS-049-V-Sch6] Length = 261 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 32/116 (27%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC + +C +C DT + + V+++ E Sbjct: 23 VF--LQGCPM-----------RCAYCHNPDT--WNEESQEAKFMTVEEIWQQYERNRQFY 67 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP 135 G +TGGE L+Q+D + L ++R ++T+G IC P Sbjct: 68 TNGG--ITVTGGEALMQIDFVIELFTYFSERNVHTCLDTSG----------ICFDP 111 >gi|312136355|ref|YP_004003692.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanothermus fervidus DSM 2088] gi|311224074|gb|ADP76930.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanothermus fervidus DSM 2088] Length = 230 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 27/121 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +F F+GC L +C +C G +V+ I+ + + + Sbjct: 21 IF--FAGCPL-----------RCPYC---HNPELLKNGKDIDVES----IKRKISSSKDF 60 Query: 85 GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKA 137 VL+GGEPL Q +++ G + ++TNG + +D++ + KA Sbjct: 61 IDAVVLSGGEPLFQEKEVEEILKHAYSLGLKTKLDTNGIYPKKLNSIIKYLDYVSLDVKA 120 Query: 138 G 138 Sbjct: 121 P 121 >gi|260768897|ref|ZP_05877831.1| pyruvate formate-lyase activating enzyme [Vibrio furnissii CIP 102972] gi|260616927|gb|EEX42112.1| pyruvate formate-lyase activating enzyme [Vibrio furnissii CIP 102972] gi|315180593|gb|ADT87507.1| pyruvate formate lyase-activating enzyme 1 [Vibrio furnissii NCTC 11218] Length = 246 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 36/162 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C DT G +V+++ + Sbjct: 25 IF--LQGC-----------LFRCKYCHNRDT----WDTHTGKEVSVEEIIAEAKSYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWICVS 134 G +GGE +LQ + +A G ++TNG T + +D Sbjct: 68 NASGGGVTCSGGESMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRKYTPVIDEVLDV---- 123 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176 DL + ++++ Q + N DF R LQ M Sbjct: 124 ----TDLVMLDIKQMQDEIHQDLIGVSNKRTLDFAR-YLQKM 160 >gi|225387044|ref|ZP_03756808.1| hypothetical protein CLOSTASPAR_00794 [Clostridium asparagiforme DSM 15981] gi|225046862|gb|EEG57108.1| hypothetical protein CLOSTASPAR_00794 [Clostridium asparagiforme DSM 15981] Length = 321 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 15/120 (12%) Query: 62 GGRYNVDQLADLI---EEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQALNKR--GFEI 114 G Y V +L + I +E + + EGR LTGGEP+ Q P ++ L G + Sbjct: 120 GREYTVGELKEQILVDQEYYRVKDGEGRTGGVTLTGGEPMSQ--FPFVERLLDELDGIHV 177 Query: 115 AVETNGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 +ET+G +D KA K + + Q N+ G D Sbjct: 178 CMETSGFAPEEQFARLLGKVDLFLFDCKATDPEKHRELCGVDNRLIQSNLKFLCDHGADI 237 >gi|51244117|ref|YP_064001.1| hypothetical protein DP0265 [Desulfotalea psychrophila LSv54] gi|50875154|emb|CAG34994.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 449 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 15/103 (14%) Query: 31 GCNLWSGREQDRLSAQCR------F-CDTD----FVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G C + CD F + +++ L+E + Sbjct: 72 GCPYDCGLCAAHGQHTCTALLEVTWRCDLGCPVCFASSGKKAAPDPSQAEISQLLERVEL 131 Query: 80 TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFE-IAVETNG 120 L+GGEP ++ D+ LI KRGF I + TNG Sbjct: 132 ASGFC--NIQLSGGEPTMRDDLAELIALAKKRGFPFIQLNTNG 172 >gi|301324930|ref|ZP_07218489.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 78-1] gi|300848181|gb|EFK75941.1| glycyl-radical enzyme activating family protein [Escherichia coli MS 78-1] Length = 279 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G +ET G + + + + DLKI + +K+ P+V Sbjct: 126 LQRLRLWGVSCTIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 182 >gi|149194702|ref|ZP_01871797.1| putative radical-activating enzyme [Caminibacter mediatlanticus TB-2] gi|149135125|gb|EDM23606.1| putative radical-activating enzyme [Caminibacter mediatlanticus TB-2] Length = 222 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 26/118 (22%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 FSGCN+ +C +C + + + D + E T Sbjct: 25 FSGCNM-----------RCPYCYNKDIVFGKKQIEK-------DEVIEFLKTRVGLLDGV 66 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG-------TIEPPQGIDWICVSPKAG 138 V TGGE L D+ P + + GFEI ++TNG + + +D+I + KA Sbjct: 67 VFTGGEATLYKDIVPFAKKIKNLGFEIKLDTNGINFEVIKELIDKKLVDYIALDFKAP 124 >gi|77918997|ref|YP_356812.1| glycerol dehydratase activating enzyme [Pelobacter carbinolicus DSM 2380] gi|77545080|gb|ABA88642.1| glycerol dehydratase, cobalamin-independent, small subunit [Pelobacter carbinolicus DSM 2380] Length = 322 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 6/89 (6%) Query: 34 LWSGREQDRLSAQC-RFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 L R++ L QC +FC + G G +V +L +IE E+ +G Sbjct: 98 LIIDRDRCTLCGQCAKFC---YAGAINIIGRYLSVPELVTMIERDRKFYEQSNGGVTFSG 154 Query: 93 GEPLLQVDV--PLIQALNKRGFEIAVETN 119 GEP Q + +QA+ RG A+ET+ Sbjct: 155 GEPTAQPEFLKAALQAIQARGIHTAIETS 183 >gi|229830129|ref|ZP_04456198.1| hypothetical protein GCWU000342_02236 [Shuttleworthia satelles DSM 14600] gi|229791427|gb|EEP27541.1| hypothetical protein GCWU000342_02236 [Shuttleworthia satelles DSM 14600] Length = 248 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 29/121 (23%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G + +F GCN+ +CR+C DT Sbjct: 9 VESFGSVDGPGIRYI----IF--LQGCNM-----------RCRYCHNVDT----WDIDDV 47 Query: 63 GRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 YN + + L+++ G+ ++GG+PLLQ+D + L + +R ++T Sbjct: 48 KNYNEQEASALLDQAERYRSYWGKEGGITVSGGDPLLQIDFLLELFRQAKERKINTCIDT 107 Query: 119 N 119 + Sbjct: 108 S 108 >gi|209521138|ref|ZP_03269865.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. H160] gi|209498413|gb|EDZ98541.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. H160] Length = 382 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 27/149 (18%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + + +++ L + G ++ R LTGGE Sbjct: 58 DRCNFRCVYCMPRAVFDKDYAFLPHS--ALLSFEEIERLAQLFVAHGVEKIR---LTGGE 112 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ ++ LI+ L + R ++ + TNG++ G+ + VS A D Sbjct: 113 PLLRKNLEFLIERLARLTTPAGRPLDLTLTTNGSLLARKARSLKDAGLTRVTVSLDALDD 172 Query: 141 LKIKGGQELKLVFPQV--NVSPENYIGFD 167 + + V ++ + +G Sbjct: 173 ALFRRMNDADFAVADVLDGIAAADAVGLA 201 >gi|329767660|ref|ZP_08259180.1| pyruvate formate-lyase 1-activating enzyme [Gemella haemolysans M341] gi|328839087|gb|EGF88673.1| pyruvate formate-lyase 1-activating enzyme [Gemella haemolysans M341] Length = 265 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 21/102 (20%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL-ADLIEEQWIT 80 VF F GC +C++C DT + VDQL ++++ + Sbjct: 39 VF--FQGC-----------MLRCKYCHNPDT--WKMHNPDAKVMTVDQLTKEIVKYRDFF 83 Query: 81 GEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 EG ++GGE LLQ+D + L + L K G V+T G Sbjct: 84 EASEGGGVTVSGGESLLQIDFILELFRELKKIGINTCVDTCG 125 >gi|323528299|ref|YP_004230451.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. CCGE1001] gi|323385301|gb|ADX57391.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. CCGE1001] Length = 431 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 19/135 (14%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVL 90 LW E R C FC + + T R + D+ ++ E G + + Sbjct: 23 PLWLLAELTYRCPLHCAFC---YNPVDYTGHNRELSTDEWLRVLREARALGAAQLGF--- 76 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 +GGEPL++ D+ L++ GF + T+G I ++ K DLK G + Sbjct: 77 SGGEPLMRDDLEVLVREARSLGFYTNLITSG----------IGLTDKRLGDLKAAGLDHI 126 Query: 150 KLVFPQVNVSPENYI 164 +L F +++ Sbjct: 127 QLSFQDSTQELNDFL 141 >gi|257387604|ref|YP_003177377.1| molybdenum cofactor biosynthesis protein A [Halomicrobium mukohataei DSM 12286] gi|257169911|gb|ACV47670.1| molybdenum cofactor biosynthesis protein A [Halomicrobium mukohataei DSM 12286] Length = 348 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 13/94 (13%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + C +C DT G + D++ L++ G + ++ TGGE Sbjct: 20 DRCNFDCVYCHNEGLGDTR--GPMDPQDEEMTADEVIRLLDVVREFGVETAKF---TGGE 74 Query: 95 PLL-QVDVPLIQALNKRGFEIAVETNGTIEPPQG 127 P+L Q V +++ G E+++ TNGT P + Sbjct: 75 PMLRQDLVEIVRRAPD-GMEVSMTTNGTFLPDRA 107 >gi|303247407|ref|ZP_07333680.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfovibrio fructosovorans JJ] gi|302491321|gb|EFL51210.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfovibrio fructosovorans JJ] Length = 222 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 44/132 (33%), Gaps = 30/132 (22%) Query: 15 GEGGHAGRVAV-FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73 GE AV FCR GC +C +C + + D L L Sbjct: 10 GE-----LAAVLFCR--GCP-----------WRCPYCHNATLRESDGEADEAFADTLPWL 51 Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQG 127 Q + V +GGEP Q +P + A+ GF+I + T G Sbjct: 52 ESRQGLLDA-----VVFSGGEPTAQPGLPAAMTAVRDLGFKIGLHTAGMFPDALADALPY 106 Query: 128 IDWICVSPKAGC 139 DW+ KA Sbjct: 107 CDWVGCDIKAPA 118 >gi|256811295|ref|YP_003128664.1| Radical SAM domain protein [Methanocaldococcus fervens AG86] gi|256794495|gb|ACV25164.1| Radical SAM domain protein [Methanocaldococcus fervens AG86] Length = 466 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 31/136 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C+ C + N ++ +I+ I G + Sbjct: 123 CNL-----------RCKHC---YANAGKPLEDELNTEEAKKVID---ILGNAGVVALAFS 165 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 GGEPL++ D+ LI G +++ TNGT+ + + K+K E+ Sbjct: 166 GGEPLMRKDLFDLINRAKDYGMSVSIATNGTLLTKENVK------------KLKE-HEVD 212 Query: 151 LVFPQVNVSPENYIGF 166 + ++ + E + F Sbjct: 213 FIQISLDGTKETHEKF 228 >gi|320526814|ref|ZP_08028004.1| pyruvate formate-lyase 1-activating enzyme [Solobacterium moorei F0204] gi|320132782|gb|EFW25322.1| pyruvate formate-lyase 1-activating enzyme [Solobacterium moorei F0204] Length = 242 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 29/104 (27%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLI---EEQW 78 +F GCN+ +C++C DT + G Y +++ + W Sbjct: 23 IF--LKGCNM-----------RCKYCHNPDT----WEMAGGELYTAEEVLQKALRYKNYW 65 Query: 79 ITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 + G ++GGE LLQ+D + L + +K+G ++T G Sbjct: 66 VNGGG----ITVSGGEALLQMDFMIELFELAHKQGIHCTLDTAG 105 >gi|291541305|emb|CBL14416.1| molybdenum cofactor biosynthesis protein A, bacterial [Roseburia intestinalis XB6B4] Length = 345 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 23/164 (14%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR + +C++C D + ++ +++ + E G R+ LTGGEPL+ Sbjct: 18 DRCNLRCKYCMPGDIETTDME----NLLTYEEIVQVTEAAAALG---IRHIRLTGGEPLV 70 Query: 98 QVD-VPLIQALNK-RGFE-IAVETNGTIEP-------PQGIDWICVSPKAGCDL---KIK 144 + V L++ + G E + + TNG + G+D + VS + ++ Sbjct: 71 RRGCVDLVEKIKNVSGIETVGMTTNGVLLAEYAKALKEAGLDSVNVSLDTLDETEFQRLT 130 Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 G EL V +N + E I Q +D + + TN Sbjct: 131 GRDELNAVLAGINAAKEAQIPVKINTVHYQHLDWKSILDYTNRV 174 >gi|312134287|ref|YP_004001625.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Caldicellulosiruptor owensensis OL] gi|311774338|gb|ADQ03825.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Caldicellulosiruptor owensensis OL] Length = 231 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 28/152 (18%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 F GCN C FC + G + D + E + Sbjct: 23 FGGCNF-----------SCPFC---YNSQLINFKGSFMDDSI---FFEYLDKRKGIVDAV 65 Query: 89 VLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGC 139 +TGGEP L I+ + R + ++TNG+ +D++ + KA Sbjct: 66 CITGGEPTLNEEYLTEFIKKIKNRSLVVKLDTNGSRPEVLQRLLDADLLDYVAMDVKAPL 125 Query: 140 D--LKIKGGQELKLVFPQVNVSPENYIGFDFE 169 + +I G ++ + + + + I ++F Sbjct: 126 EKYPQITGFSDVDKIRRSIEILKNSNIDYEFR 157 >gi|163802103|ref|ZP_02195999.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. AND4] gi|159174244|gb|EDP59052.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. AND4] Length = 246 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT G V+++ + Sbjct: 25 VF--LQGC-----------LMRCKYCHNRDT----WDTHDGKEVTVEEIIAEAKTYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A G ++TNG Sbjct: 68 NASGGGITCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNG 108 >gi|124006585|ref|ZP_01691417.1| MoaA/nifB/pqqE family protein [Microscilla marina ATCC 23134] gi|123987740|gb|EAY27431.1| MoaA/nifB/pqqE family protein [Microscilla marina ATCC 23134] Length = 326 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 18/110 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN + R +A+C FCD + + + L + + T Sbjct: 10 CNYYVTY---RCNARCGFCD---IWERPSPY-----VTLENAQRNFEGLKRLGVKIIDFT 58 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQG------IDWICVS 134 GGEPLL +P L++ GF V TNG + P Q ID + +S Sbjct: 59 GGEPLLHRQLPELLEMAQNLGFITTVTTNGLLYPKQAEKLQGKIDMLHLS 108 >gi|15611772|ref|NP_223423.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori J99] gi|7674140|sp|Q9ZL75|MOAA_HELPJ RecName: Full=Molybdenum cofactor biosynthesis protein A gi|4155260|gb|AAD06280.1| MOLYBDOPTERIN COFACTOR BIOSYNTHETIC PROTEIN [Helicobacter pylori J99] Length = 321 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 64/173 (36%), Gaps = 29/173 (16%) Query: 46 QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102 +C++C T +D + + ++ G K+ R +TGGEPLL+ Sbjct: 24 RCQYCMPTTPLDFFDDE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDE 78 Query: 103 LIQALNKRGFEIA--VETNG-TIE------PPQGIDWICV---SPKAGCDLKIKGGQELK 150 I L+ E+A + TNG +++ G+ + V S K+ LKI LK Sbjct: 79 FIAKLHAYNKEVALVLSTNGFSLKKMAKGLKDAGLSRVNVSLDSLKSDRVLKISQKDALK 138 Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQ 203 + S + + M G +E L + Y S+Q Sbjct: 139 NTLEGIEESLKVGLKLKLNTVV---MKGVNDDEILEL-LEYAKNR-----SIQ 182 >gi|239906066|ref|YP_002952805.1| putative pyruvate formate-lyase activating enzyme [Desulfovibrio magneticus RS-1] gi|239795930|dbj|BAH74919.1| putative pyruvate formate-lyase activating enzyme [Desulfovibrio magneticus RS-1] Length = 320 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 6/94 (6%) Query: 37 GREQDRLSAQCRFC-D---TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 G E +C C D + + G G ++ + ++ + G +G Sbjct: 93 GGEIGIDRVRCDLCGDCVTSCYAGSMTIVGRYLTAGEVMEEVDRDRKFYAESGGGVTFSG 152 Query: 93 GEPLLQVDVPL--IQALNKRGFEIAVETNGTIEP 124 GEP Q D L ++A RG AVET G Sbjct: 153 GEPTSQPDFLLSCLRAAKARGLHTAVETCGHAPW 186 >gi|323486377|ref|ZP_08091702.1| pyruvate formate-lyase 1-activating enzyme [Clostridium symbiosum WAL-14163] gi|323694999|ref|ZP_08109146.1| pyruvate formate-lyase activating enzyme [Clostridium symbiosum WAL-14673] gi|323400359|gb|EGA92732.1| pyruvate formate-lyase 1-activating enzyme [Clostridium symbiosum WAL-14163] gi|323500943|gb|EGB16858.1| pyruvate formate-lyase activating enzyme [Clostridium symbiosum WAL-14673] Length = 241 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 23/104 (22%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R +F GC L +CR+C DT G + L ++ Sbjct: 10 RSVIF--LQGCRL-----------RCRYCHNPDT----WDPNGGSLCTAEVLMQKLKRFK 52 Query: 79 ITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 +G +GGEPLLQ + L++ G ++T G Sbjct: 53 PYYGSKGG-VTFSGGEPLLQSGFLLELLKLCRSEGISACLDTAG 95 >gi|313114814|ref|ZP_07800314.1| pyruvate formate-lyase 1-activating enzyme [Faecalibacterium cf. prausnitzii KLE1255] gi|310622869|gb|EFQ06324.1| pyruvate formate-lyase 1-activating enzyme [Faecalibacterium cf. prausnitzii KLE1255] Length = 251 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 22/127 (17%) Query: 8 EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66 E F ++ G G VF GC + +C++C G + Sbjct: 14 ESFGSVDGPGVRFV----VF--LQGC-----------ALRCKYCHNPETW-AAEGGEEWT 55 Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124 ++L + K+G ++GGEPL Q+ + +G A++T G Sbjct: 56 AEKLFQRVYRYRNYWGKKGG-ITVSGGEPLRQMEFLTAFFELARSKGVHTALDTAGQPFR 114 Query: 125 PQGIDWI 131 P D++ Sbjct: 115 PDDPDYL 121 >gi|170702587|ref|ZP_02893460.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria IOP40-10] gi|170132498|gb|EDT00953.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria IOP40-10] Length = 372 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 25/142 (17%) Query: 41 DRLSAQCRFC---DT---DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 D+ + +C +C D+ D+ + + R + QL + G ++ R LTGGE Sbjct: 48 DQCNFRCGYCMPRDSFGPDYAFMPSS--ERLSFAQLEKIARAFISLGVEKIR---LTGGE 102 Query: 95 PLLQVDV-PLIQALN------KRGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ ++ LI+ L + EIA+ TNG++ G+ + VS A D Sbjct: 103 PLLRRNLGALIERLATLTTVDGKPVEIALTTNGSLLAAKARSLRDAGLSRVTVSLDAIDD 162 Query: 141 LKIKGGQELKLVFPQVNVSPEN 162 + + + +V E Sbjct: 163 AVFRRMSDADVPVARVLAGIEA 184 >gi|317504869|ref|ZP_07962825.1| pyruvate formate-lyase activating enzyme [Prevotella salivae DSM 15606] gi|315664053|gb|EFV03764.1| pyruvate formate-lyase activating enzyme [Prevotella salivae DSM 15606] Length = 286 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 28/118 (23%) Query: 8 EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F ++ G G + +F GC + +C FC DT + K Sbjct: 52 ETFGSVDGPGIRYI----IF--LQGCPM-----------RCLFCHNPDT----WKQNKVK 90 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 D+L D E++ T E ++GGE LLQ+D + L++ + R ++T+ Sbjct: 91 PMTADELLDQ-AERYRTYWGEKGGITISGGEALLQIDFLIELLEKAHARQINTCLDTS 147 >gi|313896806|ref|ZP_07830353.1| pyruvate formate-lyase 1-activating enzyme [Selenomonas sp. oral taxon 137 str. F0430] gi|312974253|gb|EFR39721.1| pyruvate formate-lyase 1-activating enzyme [Selenomonas sp. oral taxon 137 str. F0430] Length = 252 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 43/125 (34%), Gaps = 25/125 (20%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 E F ++ G G VF GC +C++C + G Sbjct: 11 TESFGSVDGPGIRFI----VFV--QGC-----------RYRCQYCHNPETW-EAEGGYEA 52 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG--- 120 +++ K ++GGEPLLQ+D L + +G A++T G Sbjct: 53 TPEEIFRQALRYRPY-WKNTGGITVSGGEPLLQLDFVTELFRLAKGKGVNTAIDTAGEPF 111 Query: 121 TIEPP 125 T P Sbjct: 112 THAQP 116 >gi|206895195|ref|YP_002246932.1| molybdenum cofactor biosynthesis protein MoaA [Coprothermobacter proteolyticus DSM 5265] gi|206737812|gb|ACI16890.1| molybdenum cofactor biosynthesis protein MoaA [Coprothermobacter proteolyticus DSM 5265] Length = 312 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 6/89 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + C +C R V + D++ E + LTG Sbjct: 10 NYLRISVTDRCNFDCLYC-----SHPVEMLPRERVLRFEDIVVLVQAAKELGIKKVRLTG 64 Query: 93 GEPLLQVDVP-LIQALNKRGFEIAVETNG 120 GEPLL+ D+ L+ L++ + TNG Sbjct: 65 GEPLLRRDIDKLVAMLHELDVTVHTTTNG 93 >gi|209521105|ref|ZP_03269834.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. H160] gi|209498451|gb|EDZ98577.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. H160] Length = 410 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 9/91 (9%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVL 90 LW E R C FC + + T R + +Q D++ E G + + Sbjct: 22 PLWLLAELTYRCPLHCAFC---YNPLDYTDHNRELSTEQWLDVLREARALGAVQLGF--- 75 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL++ D+ L++ ++ GF + T+G Sbjct: 76 SGGEPLVRDDLEVLVEEAHRLGFYTNLITSG 106 >gi|294140395|ref|YP_003556373.1| pyruvate formate-lyase 1 activating enzyme [Shewanella violacea DSS12] gi|293326864|dbj|BAJ01595.1| pyruvate formate-lyase 1 activating enzyme [Shewanella violacea DSS12] Length = 246 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 41/122 (33%), Gaps = 33/122 (27%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F T+ G G RF GC +C++C DT Sbjct: 11 ESFGTVDGPG---------IRFIAFMQGC-----------LMRCQYCHNRDT----WDLH 46 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G V +L + I E G +GGE +LQ + L K G ++T Sbjct: 47 GGSEVEVKELMEQIISYRPFLEASGGGVTASGGEAILQAEFVSELFAECKKEGIHTCLDT 106 Query: 119 NG 120 NG Sbjct: 107 NG 108 >gi|222480270|ref|YP_002566507.1| molybdenum cofactor biosynthesis protein A [Halorubrum lacusprofundi ATCC 49239] gi|222453172|gb|ACM57437.1| molybdenum cofactor biosynthesis protein A [Halorubrum lacusprofundi ATCC 49239] Length = 334 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 18/107 (16%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + C +C DT G D + +E + TGGE Sbjct: 22 DRCNFDCVYCHNEGLGDTR--GPMEPSDDEMTADDVVRFLE---VVEGYGVDSVKFTGGE 76 Query: 95 PLLQVDVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS 134 P+L+ D+ I E+++ TNGT P G+D + VS Sbjct: 77 PMLRQDLEEIVERTPDSMEVSLTTNGTFLPGRAEDLKAAGLDRVNVS 123 >gi|307243856|ref|ZP_07525984.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492767|gb|EFM64792.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678] Length = 345 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 27/140 (19%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F CNL +C++C D + D++ I E+ Sbjct: 4 TIFV-TQKCNL-----------RCKYCYED-NLDRRDDMSIETADKVIKFILERLTEKNI 50 Query: 84 EGRYCVL-TGGEPLL------QVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWIC---- 132 + ++ GGEPLL + L ++ R + TNGT+ + ID++C Sbjct: 51 DRPLVIIFHGGEPLLNFDLVKYIREELENKVSDRKIIYHMTTNGTLINNENIDFLCKKID 110 Query: 133 -VSPKAGCDLKIKGGQELKL 151 +S D K E ++ Sbjct: 111 FLS--VSMDGVKKINDENRI 128 >gi|284162371|ref|YP_003400994.1| radical SAM protein [Archaeoglobus profundus DSM 5631] gi|284012368|gb|ADB58321.1| Radical SAM domain protein [Archaeoglobus profundus DSM 5631] Length = 462 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C+ C + N + +E I + + Sbjct: 121 CNL-----------KCKHC---YSTAGKPWKDELNTQEALRAME---ILADAGVTAIAFS 163 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPL++ D L +A+ G +AV TNGT+ Sbjct: 164 GGEPLIRKDFFELAKAVRDHGMFVAVATNGTL 195 >gi|163943138|ref|YP_001648022.1| radical SAM domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|229170160|ref|ZP_04297847.1| Radical SAM domain protein [Bacillus cereus AH621] gi|163865335|gb|ABY46394.1| Radical SAM domain protein [Bacillus weihenstephanensis KBAB4] gi|228613305|gb|EEK70443.1| Radical SAM domain protein [Bacillus cereus AH621] Length = 292 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90 CNL C FC + ++ +V+ A +++ + + Sbjct: 15 CNL-----------ACSFC------PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK- 56 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 57 --GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 87 >gi|328957563|ref|YP_004374949.1| formate C-acetyltransferase activating enzyme [Carnobacterium sp. 17-4] gi|328673887|gb|AEB29933.1| formate C-acetyltransferase activating enzyme [Carnobacterium sp. 17-4] Length = 253 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 47/132 (35%), Gaps = 39/132 (29%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +C FC DT Sbjct: 12 TESFGSVDGPG---------IRFVTFMQGC-----------RMRCEFCHNPDT----WNM 47 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAV 116 G Y DQL + K+G ++GGEPLL +D LI+ + G + Sbjct: 48 GGGTPYTADQLLEEALSYKDYWGKKGG-ITVSGGEPLLHIDF-LIEYFRKAKEEGIHTTL 105 Query: 117 ETNG---TIEPP 125 +T G T E P Sbjct: 106 DTCGQPFTYEEP 117 >gi|307107693|gb|EFN55935.1| hypothetical protein CHLNCDRAFT_57698 [Chlorella variabilis] Length = 332 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 26/115 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC L +C FC DT +G + LA +E Sbjct: 101 VFV--QGCGL-----------RCVFCSNPDT----WHMARGKLTSSKDLAKKLERVKPYL 143 Query: 82 EKEGRY--CVLTGGEPLLQVDVP---LIQALNKRGFEIAVETNGTIEPPQGIDWI 131 + ++GGEPLLQ + L++A + RG ++T G D + Sbjct: 144 SQGDHKGGITISGGEPLLQPEFTASVLMEA-HTRGLTTCIDTTGQGMKHSHWDKV 197 >gi|325660668|ref|ZP_08149298.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Lachnospiraceae bacterium 4_1_37FAA] gi|325473029|gb|EGC76237.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Lachnospiraceae bacterium 4_1_37FAA] Length = 176 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 19/88 (21%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 GC C+ C + G + D L +IEE + Sbjct: 31 QGCP-----------HHCQGCHNPETW-EFDGGTWWTTDDLVKVIEENPLAKG-----VT 73 Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIA 115 +GGEP Q + L L RG+E+A Sbjct: 74 FSGGEPFSQAEAFAELAGKLKNRGYEVA 101 >gi|167039792|ref|YP_001662777.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacter sp. X514] gi|300914963|ref|ZP_07132278.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacter sp. X561] gi|307724883|ref|YP_003904634.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacter sp. X513] gi|166854032|gb|ABY92441.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacter sp. X514] gi|300888687|gb|EFK83834.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacter sp. X561] gi|307581944|gb|ADN55343.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacter sp. X513] Length = 228 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 62/158 (39%), Gaps = 30/158 (18%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 VF SGCN +C +C ++ G + + ++ + E Sbjct: 19 ATVFI--SGCNF-----------KCPYCHNSYLIPIRE--GIRSEKDFFNYLKRRANLIE 63 Query: 83 KEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS 134 +TGGEP L + I+ + F + ++TNG+ + +D+I + Sbjct: 64 G----VCITGGEPALWRGLKDFIKNIKDLHFSVKLDTNGSRPQVLEDLIKEELVDYIAMD 119 Query: 135 PKAGCD---LKIKGGQELKLVFPQVNVSPENYIGFDFE 169 KA + + +K +++ + V + ++I ++F Sbjct: 120 IKAPIEKYSIFLKNKKDIDNIQKSVEIIKNSHIDYEFR 157 >gi|302838985|ref|XP_002951050.1| pyruvate formate-lyase activating enzyme [Volvox carteri f. nagariensis] gi|300263745|gb|EFJ47944.1| pyruvate formate-lyase activating enzyme [Volvox carteri f. nagariensis] Length = 341 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 66/187 (35%), Gaps = 36/187 (19%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC + +C FC DT G R + +LA+ I++ Sbjct: 120 VFV--QGC-----------AMRCLFCSNPDT----WNMKGGTRTSSKELAEQIKKVRNYL 162 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET--NGTIE-----PPQGIDWIC 132 + G ++GGE +LQ + Q ++ G ++T GT D + Sbjct: 163 KPRGG-VTISGGEAMLQPKFVAAVFQEVHALGLNTTIDTTGQGTKHGNWDVVLPHTDLVL 221 Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP---FLEENTNLAI 189 K LK + LK + + + + F L+ + P ++ + I Sbjct: 222 FCIKHIDPLKYESITGLKQ---KGALRFADELADRKIPFYLRYVYIPGYTDGPKDIDKLI 278 Query: 190 SYCFQNP 196 +C + P Sbjct: 279 EWCKKQP 285 >gi|291459649|ref|ZP_06599039.1| putative heme biosynthesis protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291417681|gb|EFE91400.1| putative heme biosynthesis protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 432 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 8/78 (10%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104 +C C FV + V+++ ++E V++GGEPL+ + L+ Sbjct: 120 RCPHC---FVSAGIVEKQELKVEEILAVVERIKEINGLTD--IVVSGGEPLIHSGTIQLL 174 Query: 105 QALNKRGFEIAVETNGTI 122 + L G + + TNGT+ Sbjct: 175 KGLK--GHNVTLFTNGTL 190 >gi|166710944|ref|ZP_02242151.1| molybdenum cofactor biosynthesis protein A [Xanthomonas oryzae pv. oryzicola BLS256] Length = 343 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 59/155 (38%), Gaps = 16/155 (10%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 +C +C D R + DQL L+ G + R LTGGEPLL+ D+P Sbjct: 36 RCGYCMPADRVPDDYGFDSRQRLSFDQLETLVRAFVSVGVAKVR---LTGGEPLLRRDLP 92 Query: 103 -LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVSPKAGCDLKIKGGQELKLV 152 LI L G E +A+ TNGT+ Q + I VS A + + Sbjct: 93 SLIARLTAIEGIEDLALTTNGTLLARQAVALRQAGLRRITVSMDALEPALFRRMNGDRGE 152 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL 187 QV F+R + + + E+ L Sbjct: 153 IAQVLAGIAAAEQAGFQRLKINCVVQRGVNEDQVL 187 >gi|295107926|emb|CBL21879.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Ruminococcus obeum A2-162] Length = 232 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Query: 88 CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 ++GGEP L D+ IQ ++ G+ + ++TNGT Sbjct: 69 VCISGGEPTLAPDLEDFIQKIHNLGYPVKLDTNGTHP 105 >gi|206975908|ref|ZP_03236819.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|217962951|ref|YP_002341529.1| hypothetical protein BCAH187_A5642 [Bacillus cereus AH187] gi|222098935|ref|YP_002532993.1| hypothetical protein BCQ_5304 [Bacillus cereus Q1] gi|206746002|gb|EDZ57398.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|217067946|gb|ACJ82196.1| conserved hypothetical protein [Bacillus cereus AH187] gi|221242994|gb|ACM15704.1| conserved hypothetical protein [Bacillus cereus Q1] Length = 292 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90 CNL C FC + ++ +V+ A +++ + + Sbjct: 15 CNL-----------ACSFC------PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK- 56 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 57 --GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 87 >gi|116074219|ref|ZP_01471481.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp. RS9916] gi|116069524|gb|EAU75276.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp. RS9916] Length = 350 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 38/126 (30%) Query: 29 FSG-CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 +G CNL C +C G +++ ++++ G R Sbjct: 22 LTGRCNL-----------ACPYC----CPDADEPAGLLSLEAQLAVVQQACALGAHTLR- 65 Query: 88 CVLTGGEPLLQVDV-PLIQALNK---------RGF-EIAVETNGTIEPPQ--------GI 128 LTGGEPLL + PL++A+ G ++ + TNG + + G+ Sbjct: 66 --LTGGEPLLSDRLWPLLEAVAAARSRPDSPFHGLQQVTLTTNGALLTSERARRLRALGV 123 Query: 129 DWICVS 134 D + VS Sbjct: 124 DRLTVS 129 >gi|17221315|emb|CAA05050.2| benzylsuccinate synthase activating enzyme [Thauera aromatica] Length = 331 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 51/173 (29%), Gaps = 60/173 (34%) Query: 1 MKLYSIKEI--FLTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------Q 46 MK+ I EI F +LQ G G +F GC L + + + Sbjct: 1 MKIPLITEIQRF-SLQDGPGIRT---TIF--LKGCPLRCPWCHNPETQDARQEFYFYPDR 54 Query: 47 CRFC---------DTDFVGIQGTK-----------------------------GGRYNVD 68 C C +T + G +VD Sbjct: 55 CVGCGRCVAVCPAETSRLVRNSDGRTIVQIDRTNCQRCMRCVAACLTEARAIVGQHMSVD 114 Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119 ++ G ++GG+PL D L L+ RG +A+ET+ Sbjct: 115 EILREALSDSAFYRNSGGGVTISGGDPLYFPDFTRQLASELHARGVHVAIETS 167 >gi|147920417|ref|YP_685808.1| hypothetical protein RCIX1164 [uncultured methanogenic archaeon RC-I] gi|110621204|emb|CAJ36482.1| hypothetical protein RCIX1164 [uncultured methanogenic archaeon RC-I] Length = 340 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 +C +C + T G + A + + E R ++GGEPLL+ D+P I Sbjct: 24 RCLYCYNVWKCHGRTAPGDLPAPEWAKITGKLQR--ESSVRLITVSGGEPLLREDLPEIL 81 Query: 106 A-LNKRGFEIAVETNGTI 122 + RG +I + TNGT+ Sbjct: 82 GDIKTRGIDINLITNGTL 99 >gi|52145264|ref|YP_086721.1| molybdenum cofactor biosynthesis enzyme [Bacillus cereus E33L] gi|51978733|gb|AAU20283.1| conserved hypothetical protein; possible molybdenum cofactor biosynthesis enzyme [Bacillus cereus E33L] Length = 292 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90 CNL C FC + ++ +V+ A +++ + + Sbjct: 15 CNL-----------ACSFC------PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK- 56 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 57 --GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 87 >gi|309777240|ref|ZP_07672203.1| putative pyruvate formate-lyase activating enzyme [Erysipelotrichaceae bacterium 3_1_53] gi|308915110|gb|EFP60887.1| putative pyruvate formate-lyase activating enzyme [Erysipelotrichaceae bacterium 3_1_53] Length = 298 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 3/86 (3%) Query: 38 REQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 + CR C+ T +G ++D + + I + + G +GGEP Sbjct: 76 TYHEERCQGCRQCERTCLQDAIQFQGIDMSLDTIMEEIRKDKDYYDNSGGGVTFSGGEPF 135 Query: 97 LQ--VDVPLIQALNKRGFEIAVETNG 120 +Q L+QA + G+ AVET G Sbjct: 136 VQHTALWELLQACKREGYHTAVETTG 161 >gi|74318188|ref|YP_315928.1| putative pyruvate radical-activating enzyme [Thiobacillus denitrificans ATCC 25259] gi|74057683|gb|AAZ98123.1| putative pyruvate radical-activating enzyme [Thiobacillus denitrificans ATCC 25259] Length = 229 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 45/138 (32%), Gaps = 38/138 (27%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIE 75 G +A VFC GC +C +C D I D + + Sbjct: 17 GMLAAVVFC--QGCP-----------WRCGYCHNPD----LIPPRGEREIPWDDVLSFLR 59 Query: 76 EQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-----PPQGID 129 + + V +GGEP LQ V ++ + GF I + T G +D Sbjct: 60 RRQGLLDA----VVFSGGEPTLQAGLVDAVREVRALGFRIGLHTGGMYPKKLATVLPFVD 115 Query: 130 WICVSPKAGCDLKIKGGQ 147 W+ G D+K Sbjct: 116 WV------GMDVKAPFAD 127 >gi|30023483|ref|NP_835114.1| molybdenum cofactor biosynthesis protein [Bacillus cereus ATCC 14579] gi|229051126|ref|ZP_04194670.1| Radical SAM domain protein [Bacillus cereus AH676] gi|229130703|ref|ZP_04259656.1| Radical SAM domain protein [Bacillus cereus BDRD-Cer4] gi|229148338|ref|ZP_04276621.1| Radical SAM domain protein [Bacillus cereus BDRD-ST24] gi|296505878|ref|YP_003667578.1| molybdenum cofactor biosynthesis protein [Bacillus thuringiensis BMB171] gi|29899044|gb|AAP12315.1| Molybdenum cofactor biosynthesis enzyme and related Fe-S oxidoreductases [Bacillus cereus ATCC 14579] gi|228635132|gb|EEK91679.1| Radical SAM domain protein [Bacillus cereus BDRD-ST24] gi|228652720|gb|EEL08605.1| Radical SAM domain protein [Bacillus cereus BDRD-Cer4] gi|228722189|gb|EEL73590.1| Radical SAM domain protein [Bacillus cereus AH676] gi|296326930|gb|ADH09858.1| molybdenum cofactor biosynthesis protein [Bacillus thuringiensis BMB171] Length = 292 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90 CNL C FC + ++ +V+ A +++ + + Sbjct: 15 CNL-----------ACSFC------PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK- 56 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 57 --GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 87 >gi|20089462|ref|NP_615537.1| heme d1 biosynthesis protein NirJ [Methanosarcina acetivorans C2A] gi|19914367|gb|AAM04017.1| heme d1 biosynthesis protein NirJ [Methanosarcina acetivorans C2A] Length = 349 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 17/101 (16%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 +GCNL CR G ++ I+E G+ Sbjct: 16 TAGCNLNC--------VHCRG-----ASTSSVPEGELTTEEAKHFIDEVVELGK---PIL 59 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGI 128 +L+GGEPL + DV + + G + + TNGT+ P+ + Sbjct: 60 ILSGGEPLTRSDVFEIARYATDAGLRVVLATNGTLLTPELV 100 >gi|56476469|ref|YP_158058.1| benzylsuccinate synthase activating enzyme [Aromatoleum aromaticum EbN1] gi|56312512|emb|CAI07157.1| Benzylsuccinate synthase activating enzyme [Aromatoleum aromaticum EbN1] Length = 331 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 51/173 (29%), Gaps = 60/173 (34%) Query: 1 MKLYSIKEI--FLTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS-----------AQ 46 M++ + EI F +LQ G G +F GC L + + A+ Sbjct: 1 MRIPLVTEIQRF-SLQDGPGIRT---TIF--LKGCPLHCPWCHNPETQDARQEFYYYPAR 54 Query: 47 CRFCD---------TDFVGIQGTKGGRYNVD--------------------------QLA 71 C C T + R +D + Sbjct: 55 CVGCGRCVAVCPAGTSRLVHHSDGRTRIELDRTNCQRCMRCVAACLTEARSIVGQRMSVE 114 Query: 72 DLIEEQWITGEKEGRY---CVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119 D++ E ++GGEPL + L L+ G +A+ET+ Sbjct: 115 DILREALSDSAFYRNSGGGVTISGGEPLYFPEFTRQLAGELHAAGVHVAIETS 167 >gi|75762369|ref|ZP_00742244.1| Molybdenum cofactor biosynthesis enzyme and related Fe-S oxidoreductases [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206970162|ref|ZP_03231115.1| conserved hypothetical protein [Bacillus cereus AH1134] gi|218231649|ref|YP_002370232.1| hypothetical protein BCB4264_A5580 [Bacillus cereus B4264] gi|228903941|ref|ZP_04068051.1| Radical SAM domain protein [Bacillus thuringiensis IBL 4222] gi|228942606|ref|ZP_04105138.1| Radical SAM domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955708|ref|ZP_04117703.1| Radical SAM domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961721|ref|ZP_04123325.1| Radical SAM domain protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228968591|ref|ZP_04129576.1| Radical SAM domain protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228975536|ref|ZP_04136088.1| Radical SAM domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982172|ref|ZP_04142461.1| Radical SAM domain protein [Bacillus thuringiensis Bt407] gi|229072922|ref|ZP_04206118.1| Radical SAM domain protein [Bacillus cereus F65185] gi|229083004|ref|ZP_04215419.1| Radical SAM domain protein [Bacillus cereus Rock4-2] gi|229153615|ref|ZP_04281792.1| Radical SAM domain protein [Bacillus cereus m1550] gi|74490145|gb|EAO53486.1| Molybdenum cofactor biosynthesis enzyme and related Fe-S oxidoreductases [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206734739|gb|EDZ51908.1| conserved hypothetical protein [Bacillus cereus AH1134] gi|218159606|gb|ACK59598.1| conserved hypothetical protein [Bacillus cereus B4264] gi|228629844|gb|EEK86496.1| Radical SAM domain protein [Bacillus cereus m1550] gi|228700305|gb|EEL52876.1| Radical SAM domain protein [Bacillus cereus Rock4-2] gi|228710168|gb|EEL62146.1| Radical SAM domain protein [Bacillus cereus F65185] gi|228777524|gb|EEM25802.1| Radical SAM domain protein [Bacillus thuringiensis Bt407] gi|228784146|gb|EEM32173.1| Radical SAM domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228791083|gb|EEM38700.1| Radical SAM domain protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228797956|gb|EEM44965.1| Radical SAM domain protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228803936|gb|EEM50560.1| Radical SAM domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817032|gb|EEM63125.1| Radical SAM domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228855699|gb|EEN00249.1| Radical SAM domain protein [Bacillus thuringiensis IBL 4222] gi|326943255|gb|AEA19151.1| molybdenum cofactor biosynthesis protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 292 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90 CNL C FC + ++ +V+ A +++ + + Sbjct: 15 CNL-----------ACSFC------PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK- 56 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 57 --GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 87 >gi|30265476|ref|NP_847853.1| hypothetical protein BA_5707 [Bacillus anthracis str. Ames] gi|42784642|ref|NP_981889.1| hypothetical protein BCE_5597 [Bacillus cereus ATCC 10987] gi|47531044|ref|YP_022393.1| hypothetical protein GBAA_5707 [Bacillus anthracis str. 'Ames Ancestor'] gi|47568578|ref|ZP_00239277.1| molybdenum cofactor biosynthesis enzyme and related Fe-S oxidoreductases [Bacillus cereus G9241] gi|49188295|ref|YP_031548.1| hypothetical protein BAS5311 [Bacillus anthracis str. Sterne] gi|49480465|ref|YP_039448.1| molybdenum cofactor biosynthesis enzyme [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118480486|ref|YP_897637.1| molybdenum cofactor biosynthesis protein [Bacillus thuringiensis str. Al Hakam] gi|165872538|ref|ZP_02217171.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167636260|ref|ZP_02394563.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|167641439|ref|ZP_02399689.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|170689210|ref|ZP_02880407.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|170708666|ref|ZP_02899105.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|177651819|ref|ZP_02934402.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190568908|ref|ZP_03021810.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|196041932|ref|ZP_03109219.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] gi|196045483|ref|ZP_03112714.1| conserved hypothetical protein [Bacillus cereus 03BB108] gi|225867439|ref|YP_002752817.1| hypothetical protein BCA_5609 [Bacillus cereus 03BB102] gi|227818227|ref|YP_002818236.1| hypothetical protein BAMEG_5755 [Bacillus anthracis str. CDC 684] gi|229112870|ref|ZP_04242401.1| Radical SAM domain protein [Bacillus cereus Rock1-15] gi|229603794|ref|YP_002869667.1| hypothetical protein BAA_5738 [Bacillus anthracis str. A0248] gi|254687101|ref|ZP_05150959.1| hypothetical protein BantC_25123 [Bacillus anthracis str. CNEVA-9066] gi|254724116|ref|ZP_05185901.1| hypothetical protein BantA1_16873 [Bacillus anthracis str. A1055] gi|254733622|ref|ZP_05191339.1| hypothetical protein BantWNA_00447 [Bacillus anthracis str. Western North America USA6153] gi|254742158|ref|ZP_05199845.1| hypothetical protein BantKB_14293 [Bacillus anthracis str. Kruger B] gi|254755932|ref|ZP_05207964.1| hypothetical protein BantV_25964 [Bacillus anthracis str. Vollum] gi|254761644|ref|ZP_05213664.1| hypothetical protein BantA9_25303 [Bacillus anthracis str. Australia 94] gi|300118842|ref|ZP_07056562.1| hypothetical protein BCSJ1_18040 [Bacillus cereus SJ1] gi|301056922|ref|YP_003795133.1| hypothetical protein BACI_c54500 [Bacillus anthracis CI] gi|30260154|gb|AAP29339.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gi|42740574|gb|AAS44497.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gi|47506192|gb|AAT34868.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames Ancestor'] gi|47554820|gb|EAL13172.1| molybdenum cofactor biosynthesis enzyme and related Fe-S oxidoreductases [Bacillus cereus G9241] gi|49182222|gb|AAT57598.1| conserved hypothetical protein [Bacillus anthracis str. Sterne] gi|49332021|gb|AAT62667.1| conserved hypothetical protein, possible molybdenum cofactor biosynthesis enzyme [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118419711|gb|ABK88130.1| conserved hypothetical protein [Bacillus thuringiensis str. Al Hakam] gi|164711761|gb|EDR17305.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167510614|gb|EDR86010.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|167528375|gb|EDR91146.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|170126448|gb|EDS95336.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|170666853|gb|EDT17619.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|172082523|gb|EDT67587.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190559975|gb|EDV13958.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|196023690|gb|EDX62366.1| conserved hypothetical protein [Bacillus cereus 03BB108] gi|196027187|gb|EDX65807.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] gi|225790086|gb|ACO30303.1| conserved hypothetical protein [Bacillus cereus 03BB102] gi|227003322|gb|ACP13065.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684] gi|228670549|gb|EEL25862.1| Radical SAM domain protein [Bacillus cereus Rock1-15] gi|229268202|gb|ACQ49839.1| conserved hypothetical protein [Bacillus anthracis str. A0248] gi|298723810|gb|EFI64532.1| hypothetical protein BCSJ1_18040 [Bacillus cereus SJ1] gi|300379091|gb|ADK07995.1| conserved hypothetical protein [Bacillus cereus biovar anthracis str. CI] gi|324329409|gb|ADY24669.1| hypothetical protein YBT020_27235 [Bacillus thuringiensis serovar finitimus YBT-020] Length = 292 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90 CNL C FC + ++ +V+ A +++ + + Sbjct: 15 CNL-----------ACSFC------PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK- 56 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 57 --GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 87 >gi|262194648|ref|YP_003265857.1| radical SAM protein [Haliangium ochraceum DSM 14365] gi|262077995|gb|ACY13964.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365] Length = 370 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 5/80 (6%) Query: 28 RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 R +G R +C C T G + ++++ I + RY Sbjct: 34 RLAG---LYVAITRRCPLRCEHCSTRSSPQVGERELGPHLERFFASIGKAGTAAHPPPRY 90 Query: 88 CVLTGGEPLLQVDVPLIQAL 107 TGGEPLL L+ L Sbjct: 91 VYFTGGEPLLHP--ELVTKL 108 >gi|160943776|ref|ZP_02091007.1| hypothetical protein FAEPRAM212_01274 [Faecalibacterium prausnitzii M21/2] gi|158444950|gb|EDP21953.1| hypothetical protein FAEPRAM212_01274 [Faecalibacterium prausnitzii M21/2] Length = 250 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 23/116 (19%) Query: 8 EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66 E F ++ G G VF GC + +C++C +G G + Sbjct: 14 ESFGSVDGPGVRFV----VF--LQGC-----------ALRCKYCHNPETWAEG--GEAWT 54 Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 + L + K+G ++GGEPL Q+D +G A++T G Sbjct: 55 AEALFQRVYRYRNYWGKKGG-ITVSGGEPLRQLDFLTEFFTLARAKGVHTALDTAG 109 >gi|91772361|ref|YP_565053.1| radical SAM family Fe-S protein [Methanococcoides burtonii DSM 6242] gi|91711376|gb|ABE51303.1| Radical SAM family protein [Methanococcoides burtonii DSM 6242] Length = 206 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 61/161 (37%), Gaps = 28/161 (17%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLL 97 +R SA C FC D GI G+ L +++++ + R V TG GEP + Sbjct: 30 NRCSANCVFCIRDIS-DGIYGSNLRLTKEPSLDEILDKLGSLDLEIYREVVFTGFGEPTI 88 Query: 98 QVDVPL--IQALNKRGFEIAVETNG-TIEPPQGIDWICVSPKAGCDLKIKGGQELKLV-F 153 ++D+ L + L + G ++ ++TNG D I ELK Sbjct: 89 RLDIVLEVTRWLKEHGMKVRIDTNGHAQLLHPERDVIS---------------ELKDAGL 133 Query: 154 PQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 +V+VS ++ P LE + + + Sbjct: 134 DEVSVSLNAESKERYDELC-----QPDLENAYEAMLEFTKE 169 >gi|126174881|ref|YP_001051030.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica OS155] gi|304411937|ref|ZP_07393548.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS183] gi|307303295|ref|ZP_07583050.1| pyruvate formate-lyase activating enzyme [Shewanella baltica BA175] gi|125998086|gb|ABN62161.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS155] gi|304349797|gb|EFM14204.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS183] gi|306913655|gb|EFN44077.1| pyruvate formate-lyase activating enzyme [Shewanella baltica BA175] Length = 246 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 57/195 (29%), Gaps = 44/195 (22%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F T+ G G RF GC +C++C DT Sbjct: 10 VESFGTVDGPG---------IRFITFMQGC-----------LMRCQYCHNRDT----WDL 45 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117 G VD+L I + +GGE +LQ + L A + G ++ Sbjct: 46 DGGKEVLVDELMSQIISYRPFLDASNGGVTASGGEAILQAEFVAELFTACQQEGIHTCLD 105 Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177 TNG + + D + + L ++ + +LQ Sbjct: 106 TNGFVRKYTPV----------IDELLDHTDLVLLDIKHMDDEKHIELTKVSNHRTLQFA- 154 Query: 178 GPFLEENTNLAISYC 192 E N I Y Sbjct: 155 QYLAERNQATWIRYV 169 >gi|319790216|ref|YP_004151849.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1] gi|317114718|gb|ADU97208.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1] Length = 376 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR ++ G ++ + L+++ + VLT Sbjct: 20 CNLQC--------IHCR-----SASTMESEQGDFSTEDGKKLLDD---IAKLSKPTVVLT 63 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ D+ L + K GF + + TNGT+ Sbjct: 64 GGEPLLREDIWELAEYGTKLGFRMCIATNGTL 95 >gi|226950642|ref|YP_002805733.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A2 str. Kyoto] gi|226844521|gb|ACO87187.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A2 str. Kyoto] Length = 232 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 23/101 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G + D++ + Sbjct: 22 VF--FQGC-----------QLRCVYCHNPDT----WDFNAGIEISSDEVLKKVLRYKPY- 63 Query: 82 EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 K+ +GGEPL+Q + +++ + A++T+G Sbjct: 64 FKQVGGITCSGGEPLMQPEFLLEILKKCENQSIHTALDTSG 104 >gi|225571285|ref|ZP_03780281.1| hypothetical protein CLOHYLEM_07383 [Clostridium hylemonae DSM 15053] gi|225159761|gb|EEG72380.1| hypothetical protein CLOHYLEM_07383 [Clostridium hylemonae DSM 15053] Length = 259 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 23/121 (19%) Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG---TKGGRYNVDQLA 71 GEG V+ GC L +C++C T + G + + Sbjct: 19 GEGLRT---VVYV--KGCPL-----------RCQWCSTPESQLVECMMDYGYDATPESIL 62 Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN--GTIEPPQG 127 I + + G ++GGE +LQ D ++ + G A+E++ G+ E + Sbjct: 63 KEIRKDEVFFFHSGGGVTISGGEVMLQSDFVRDILAGCKEDGLNTAIESSLFGSYEALEK 122 Query: 128 I 128 + Sbjct: 123 L 123 >gi|218900586|ref|YP_002448997.1| hypothetical protein BCG9842_B5367 [Bacillus cereus G9842] gi|218543276|gb|ACK95670.1| conserved hypothetical protein [Bacillus cereus G9842] Length = 279 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90 CNL C FC + ++ +V+ A +++ + + Sbjct: 2 CNL-----------ACSFC------PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK- 43 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 44 --GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 74 >gi|218906638|ref|YP_002454472.1| hypothetical protein BCAH820_5552 [Bacillus cereus AH820] gi|218537395|gb|ACK89793.1| conserved hypothetical protein [Bacillus cereus AH820] Length = 292 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90 CNL C FC + ++ +V+ A +++ + + Sbjct: 15 CNL-----------ACSFC------PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK- 56 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 57 --GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 87 >gi|325264391|ref|ZP_08131122.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp. D5] gi|324030462|gb|EGB91746.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp. D5] Length = 304 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 24/128 (18%) Query: 50 CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQAL 107 C T + + KG + + ++ G L+GGEPLLQ D V L++ Sbjct: 94 CPTKALTV---KGNWMTPKEAFTEAVKDEEFYKRSGGGVTLSGGEPLLQADFAVALLKLC 150 Query: 108 NKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ----ELKLVFPQVNVSPENY 163 + G AVET G CV PK + + +LK V Q++ +N+ Sbjct: 151 REHGIHTAVETTG-----------CV-PKENLKKVLPYTELFLYDLKSVDSQIH---KNW 195 Query: 164 IGFDFERF 171 G D R Sbjct: 196 TGADNHRI 203 >gi|77918971|ref|YP_356786.1| hypothetical protein Pcar_1369 [Pelobacter carbinolicus DSM 2380] gi|77545054|gb|ABA88616.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380] Length = 471 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 23/113 (20%) Query: 16 EGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE 75 EG G +F CN +C +C T +D + Sbjct: 75 EG---GWSCLFI-TGRCN-----------CRCFYCPTAQTENDLPTTNTVEFRTPSDYVG 119 Query: 76 EQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKR---GFEIAVETNGTIE 123 G + +TGGEPLL L ++A+ K G + + TNGT+ Sbjct: 120 YLERFGFRGA---SVTGGEPLLNFKRSLAYVRAIKKHFGDGMHVWLYTNGTLA 169 >gi|65317439|ref|ZP_00390398.1| COG0535: Predicted Fe-S oxidoreductases [Bacillus anthracis str. A2012] Length = 284 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90 CNL C FC + ++ +V+ A +++ + + Sbjct: 7 CNL-----------ACSFC------PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK- 48 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 49 --GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 79 >gi|210621248|ref|ZP_03292554.1| hypothetical protein CLOHIR_00497 [Clostridium hiranonis DSM 13275] gi|210154859|gb|EEA85865.1| hypothetical protein CLOHIR_00497 [Clostridium hiranonis DSM 13275] Length = 325 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 52/156 (33%), Gaps = 52/156 (33%) Query: 20 AGRVA-VFCRFSGCNLWSGREQDRLSA--------------QCRFC-------------D 51 AG VF F GC L Q+ CR C D Sbjct: 40 AGLRTTVF--FKGCPLRCKWCQNPEGLSAKKRPIYFKNSCIHCRICEKVSKENQIEYRDD 97 Query: 52 TDFVGIQGTKG-----------------GRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 + + +G Y V++L + I+E + +G +GGE Sbjct: 98 RPYFNLDYKEGFDNLIKACPSGAIRYDSKEYVVEELLEKIKEDQVFFRNDGG-VTFSGGE 156 Query: 95 PLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGI 128 PL+Q V +++ + G A+ET T+ P I Sbjct: 157 PLMQGEFLVEILKRCKEEGIHTAIET--TMFAPLEI 190 >gi|29899152|gb|AAP03119.1| hypothetical protein [Streptomyces griseochromogenes] Length = 344 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 20/97 (20%) Query: 26 FCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 F R CN A C CD F + T R++++ +L+ G Sbjct: 24 FIRLLEACN-----------ADCFMCD--FALSRDTF--RFSLEDFDELLPRAVEAGVGY 68 Query: 85 GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 R+ TGGEPL+ DV L++ G ++++ TNG Sbjct: 69 IRF---TGGEPLMHTDVAELVRRGTDAGMKMSIITNG 102 >gi|303230017|ref|ZP_07316791.1| pyruvate formate-lyase 1-activating enzyme [Veillonella atypica ACS-134-V-Col7a] gi|302515383|gb|EFL57351.1| pyruvate formate-lyase 1-activating enzyme [Veillonella atypica ACS-134-V-Col7a] Length = 261 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 32/116 (27%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC + +C +C DT + + V+++ E Sbjct: 23 VF--LQGCPM-----------RCAYCHNPDT--WSEESQEAKFMTVEEIWQQYERNRQFY 67 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP 135 G +TGGE L+Q+D + L ++R ++T+G IC P Sbjct: 68 TNGG--ITVTGGEALMQMDFVIELFTYFSERNVHTCLDTSG----------ICFDP 111 >gi|251772215|gb|EES52785.1| Radical SAM domain protein [Leptospirillum ferrodiazotrophum] Length = 338 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C + R + +Q +EE + Sbjct: 38 CNL-----------ECAGCG-KIQYPEEILKKRLSPEQCIRAVEECG------APVVTIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ ++ ++ A+ R + + TNG I +G++ I SP + + G +E Sbjct: 80 GGEPLIHPEIGEIVSAMIARKKFVYLCTNG-ILLERGLETISPSPYLTFSVHLDGLRE 136 >gi|332112539|gb|EGJ12332.1| radical SAM family protein [Rubrivivax benzoatilyticus JA2] Length = 389 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 19/94 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG-RYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C +C ++ ++G Y +DQL I +Q E Y Sbjct: 38 CNL-----------KCSYCSIAEGDVRESQGHVAYTMDQLDAFIAQQLAGKEV---YVTF 83 Query: 91 TGGEPLLQVDVPLIQALNKRG--FEIAVETNGTI 122 GGEP L + P I+A+ +R F ++TNGT+ Sbjct: 84 YGGEPTL--NRPFIEAVMQRHPLFRFQLQTNGTL 115 >gi|301063643|ref|ZP_07204157.1| radical SAM domain protein [delta proteobacterium NaphS2] gi|300442291|gb|EFK06542.1| radical SAM domain protein [delta proteobacterium NaphS2] Length = 351 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 16/92 (17%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV- 89 GCNL CR C ++ + G + L + G V Sbjct: 4 GCNL-----------ACRHC---WIQPKFQGSGHSSPAMDLGLFRLIIDQAKPLGLSVVK 49 Query: 90 LTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 LTGGEPL+ + ++ + + + VETNG Sbjct: 50 LTGGEPLIHPRINEMLDYIKREDLRLTVETNG 81 >gi|91774915|ref|YP_544671.1| GTP cyclohydrolase subunit MoaA [Methylobacillus flagellatus KT] gi|91708902|gb|ABE48830.1| GTP cyclohydrolase subunit MoaA [Methylobacillus flagellatus KT] Length = 329 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 8/104 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGT-KGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 N DR +C +C +++ ++ G R +T Sbjct: 17 NYLRLSVTDRCDLRCHYC-MPVGFSDYEIPDNWLTFEEIERVVNAFAKLGVNAVR---VT 72 Query: 92 GGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPPQGIDWIC 132 GGEPLL+ D+ LI L++ G I++ TNGT D Sbjct: 73 GGEPLLRKDLATLISNLSRINGLSDISLSTNGTQLARYAKDLKT 116 >gi|261402990|ref|YP_003247214.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanocaldococcus vulcanius M7] gi|261369983|gb|ACX72732.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanocaldococcus vulcanius M7] Length = 241 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 32/126 (25%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F GCN+ +C +C + + +++L I+ + Sbjct: 24 IF--LHGCNM-----------KCPYCHNLKHIL---QHKKEMTIEELFKDIDFLFADA-- 65 Query: 84 EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVS 134 V++GGEP LQ D + + + K + ++TNGT +D++ V Sbjct: 66 ----IVISGGEPTLQKDAVIEIARYAKKNNLPVKIDTNGTHPEVIEELVKNDLVDYVAVD 121 Query: 135 PKAGCD 140 K D Sbjct: 122 VKCRFD 127 >gi|238927635|ref|ZP_04659395.1| [formate-C-acetyltransferase]-activating enzyme [Selenomonas flueggei ATCC 43531] gi|238884560|gb|EEQ48198.1| [formate-C-acetyltransferase]-activating enzyme [Selenomonas flueggei ATCC 43531] Length = 251 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 29/127 (22%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 E F ++ G G VF GC +C++C + G Sbjct: 11 TESFGSVDGPGIRFI----VFV--QGC-----------RYRCQYCHNPETW-EREGGYEA 52 Query: 66 NVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG- 120 +++ + W R ++GGEPLLQ++ L + ++G ++T G Sbjct: 53 TAEEI---FRQAWRYRPYWKRTGGITVSGGEPLLQLEFVTELFRLAKEKGVNTVIDTAGE 109 Query: 121 --TIEPP 125 T + P Sbjct: 110 PFTYDEP 116 >gi|18312025|ref|NP_558692.1| metallo cofactor biosynthesis protein [Pyrobaculum aerophilum str. IM2] gi|18159450|gb|AAL62874.1| metallo cofactor biosynthesis protein [Pyrobaculum aerophilum str. IM2] Length = 384 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 18/96 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C ++ + G N + D++++ E + T Sbjct: 46 CNL-----------KCVHC---YIDAGLAEPGELNTKEALDVVDQM---AEVGVPLILFT 88 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ 126 GGEPL + D + + RG ++ + TNGT+ P+ Sbjct: 89 GGEPLTRPDFFEIAEYAKDRGIKLVLSTNGTLITPE 124 >gi|90422688|ref|YP_531058.1| glycyl-radical activating protein [Rhodopseudomonas palustris BisB18] gi|90104702|gb|ABD86739.1| Glycyl-radical enzyme activating [Rhodopseudomonas palustris BisB18] Length = 306 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 KG V Q+ +++ + G L+GGEPL+Q D + L++A +G+ A+ET Sbjct: 107 KGRSMTVWQVMQELQKDATNYRRSGGGITLSGGEPLVQSDFALELLKACKDKGWSTAMET 166 Query: 119 NGTIE 123 G + Sbjct: 167 TGNVP 171 >gi|116494898|ref|YP_806632.1| pyruvate-formate lyase-activating enzyme [Lactobacillus casei ATCC 334] gi|227535104|ref|ZP_03965153.1| [formate-C-acetyltransferase]-activating enzyme [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|116105048|gb|ABJ70190.1| Pyruvate-formate lyase-activating enzyme [Lactobacillus casei ATCC 334] gi|227187245|gb|EEI67312.1| [formate-C-acetyltransferase]-activating enzyme [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 283 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 37/131 (28%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +C++C DT +G+ Sbjct: 32 VESFGSVDGPG---------IRFVVFMQGC-----------RMRCQYCHNPDTWNIGV-- 69 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117 G DQ+ + +G +GGE L+Q+D + L G ++ Sbjct: 70 --GEEMTADQILADAQRYKAFWGDQGG-ITCSGGESLVQIDFILELFTKAKALGISTCLD 126 Query: 118 TNG---TIEPP 125 T+G T + P Sbjct: 127 TSGGPFTRDQP 137 >gi|301066458|ref|YP_003788481.1| pyruvate-formate lyase-activating enzyme [Lactobacillus casei str. Zhang] gi|300438865|gb|ADK18631.1| Pyruvate-formate lyase-activating enzyme [Lactobacillus casei str. Zhang] Length = 283 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 37/131 (28%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +C++C DT +G+ Sbjct: 32 VESFGSVDGPG---------IRFVVFMQGC-----------RMRCQYCHNPDTWNIGV-- 69 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117 G DQ+ + +G +GGE L+Q+D + L G ++ Sbjct: 70 --GEEMTADQILADAQRYKAFWGDQGG-ITCSGGESLVQIDFILELFTKAKALGISTCLD 126 Query: 118 TNG---TIEPP 125 T+G T + P Sbjct: 127 TSGGPFTRDQP 137 >gi|253689906|ref|YP_003019096.1| glycyl-radical enzyme activating protein family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756484|gb|ACT14560.1| glycyl-radical enzyme activating protein family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 316 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 3/79 (3%) Query: 46 QCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-- 102 CR C+T G G V +L ++I + + G L+GGE LQ D Sbjct: 97 GCRKCETACLSGALDVIGQEMTVTELMEIIMQDYPFYLSSGGGVTLSGGEMSLQTDFAVD 156 Query: 103 LIQALNKRGFEIAVETNGT 121 L+ A + AVET GT Sbjct: 157 LLTACKRMMIHTAVETQGT 175 >gi|169334682|ref|ZP_02861875.1| hypothetical protein ANASTE_01085 [Anaerofustis stercorihominis DSM 17244] gi|169257420|gb|EDS71386.1| hypothetical protein ANASTE_01085 [Anaerofustis stercorihominis DSM 17244] Length = 294 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119 G +L D I + + G +GGEPL+Q D L I+ L + +A+ET+ Sbjct: 98 GEYITPKELVDRIMPEMEYYKTSGGGVTFSGGEPLMQSDFLLEVIKILKENDVNVAIETD 157 Query: 120 GTIE 123 G ++ Sbjct: 158 GFVD 161 >gi|239631502|ref|ZP_04674533.1| pyruvate-formate lyase-activating enzyme [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525967|gb|EEQ64968.1| pyruvate-formate lyase-activating enzyme [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 283 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 37/131 (28%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +C++C DT +G+ Sbjct: 32 VESFGSVDGPG---------IRFVVFMQGC-----------RMRCQYCHNPDTWNIGV-- 69 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117 G DQ+ + +G +GGE L+Q+D + L G ++ Sbjct: 70 --GEEMTADQILADAQRYKAFWGDQGG-ITCSGGESLVQIDFILELFTKAKALGISTCLD 126 Query: 118 TNG---TIEPP 125 T+G T + P Sbjct: 127 TSGGPFTRDQP 137 >gi|153001208|ref|YP_001366889.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica OS185] gi|160875881|ref|YP_001555197.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica OS195] gi|217972870|ref|YP_002357621.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica OS223] gi|151365826|gb|ABS08826.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS185] gi|160861403|gb|ABX49937.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS195] gi|217498005|gb|ACK46198.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS223] gi|315268072|gb|ADT94925.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS678] Length = 246 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 41/123 (33%), Gaps = 33/123 (26%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F T+ G G RF GC +C++C DT Sbjct: 10 VESFGTVDGPG---------IRFITFMQGC-----------LMRCQYCHNRDT----WDL 45 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117 G VD+L I + +GGE +LQ + L A + G ++ Sbjct: 46 DGGKEVLVDELMSQIISYRPFLDASNGGVTASGGEAILQAEFVAELFTACQQEGIHTCLD 105 Query: 118 TNG 120 TNG Sbjct: 106 TNG 108 >gi|307265925|ref|ZP_07547474.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306919094|gb|EFN49319.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 228 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 40/163 (24%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 VF SGCN +C +C Y + + E+ Sbjct: 19 ATVFI--SGCNF-----------KCPYC-----------HNSYLIPIREGIRSEKDFFNY 54 Query: 83 KEGRY-----CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPP-------QGID 129 + R +TGGEP L + I+ + F + ++TNG+ + +D Sbjct: 55 LKKRANLIEGVCITGGEPTLWRGLKNFIKNIKDLHFSVKLDTNGSRPQVLEDLIKGELVD 114 Query: 130 WICVSPKAGCD---LKIKGGQELKLVFPQVNVSPENYIGFDFE 169 +I + KA + + +K +++ + V + ++I ++F Sbjct: 115 YIAMDIKAPIEKYGIFLKNKKDIDNIQKSVEIIKNSHIDYEFR 157 >gi|284167118|ref|YP_003405396.1| radical SAM protein [Haloterrigena turkmenica DSM 5511] gi|284016773|gb|ADB62723.1| Radical SAM domain protein [Haloterrigena turkmenica DSM 5511] Length = 319 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 16/102 (15%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL + + ++ I+E + + Sbjct: 19 GCNLHCDHCLSGSGPG------------HQQPDELSTEEAMAFIDELDEMDVFQ---VNI 63 Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GGEP ++ D + L++ L R V TNGT + +D I Sbjct: 64 GGGEPFIRPDMLELLEELTDRDISTCVSTNGTQLDEETLDRI 105 >gi|39998543|ref|NP_954494.1| radical SAM domain-containing protein [Geobacter sulfurreducens PCA] gi|39985490|gb|AAR36844.1| radical SAM domain protein [Geobacter sulfurreducens PCA] gi|298507486|gb|ADI86209.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase [Geobacter sulfurreducens KN400] Length = 356 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 17/95 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL CR C +D +G + ++ L++E + Sbjct: 15 TQKCNLKC--------VHCR-CSSDLTSSEGD----FTTEEGKKLLKE---IADFSKPVI 58 Query: 89 VLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122 VL+GGEPL+ Q L + G + + TNG + Sbjct: 59 VLSGGEPLMRQDIFELAEYGTSLGLRMCMATNGAL 93 >gi|134295140|ref|YP_001118875.1| molybdenum cofactor biosynthesis protein A [Burkholderia vietnamiensis G4] gi|134138297|gb|ABO54040.1| GTP cyclohydrolase subunit MoaA [Burkholderia vietnamiensis G4] Length = 370 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 61/162 (37%), Gaps = 36/162 (22%) Query: 28 RFSGCNLWSGREQ--DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF+ L R DR + +C +C D D+ + + +++ + + ++ Sbjct: 31 RFAR-PLRDLRISVTDRCNFRCVYCMPRDVFDKDYPFLPHS--ALLTHEEI-ERVARLFV 86 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------P 125 E +TGGEPLL+ ++ LI+ L + R ++ + TNG++ Sbjct: 87 AHGVEK--IRITGGEPLLRKNLEFLIERLARLTTHDGRPLDVTLTTNGSLLARKARALKD 144 Query: 126 QGIDWICVS--------PKAGCDLKIKGGQELKLVFPQVNVS 159 G+ + VS K D L +F V Sbjct: 145 AGLTRVTVSLDALDDALFKRMNDADFASADVLDGIFAAQAVD 186 >gi|327400584|ref|YP_004341423.1| Radical SAM domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316092|gb|AEA46708.1| Radical SAM domain protein [Archaeoglobus veneficus SNP6] Length = 534 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 18/106 (16%) Query: 31 GCNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 GC G +R C +C + G +V+Q+A ++ Sbjct: 97 GCPFSCGLCPLHKSHTALLNIVLTNRCDLACWYC-FFYAKRAGYVYEP-SVEQIARMVRT 154 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120 LTGGEP L+ D+ +I+A+ G I + TNG Sbjct: 155 ARNMKPVGCNAVQLTGGEPTLRDDLIDIIKAIKAEGIDHIQLNTNG 200 >gi|191638408|ref|YP_001987574.1| Formate acetyltransferase activating enzyme [Lactobacillus casei BL23] gi|190712710|emb|CAQ66716.1| Formate acetyltransferase activating enzyme [Lactobacillus casei BL23] gi|327382437|gb|AEA53913.1| Pyruvate formate-lyase activating enzyme [Lactobacillus casei LC2W] gi|327385636|gb|AEA57110.1| Pyruvate formate-lyase activating enzyme [Lactobacillus casei BD-II] Length = 283 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 37/131 (28%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +C++C DT +G+ Sbjct: 32 VESFGSVDGPG---------IRFVVFMQGC-----------RMRCQYCHNPDTWNIGV-- 69 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117 G DQ+ + +G +GGE L+Q+D + L G ++ Sbjct: 70 --GEEMTADQILADAQRYKAFWGDQGG-ITCSGGESLVQIDFILELFTKAKALGISTCLD 126 Query: 118 TNG---TIEPP 125 T+G T + P Sbjct: 127 TSGGPFTRDQP 137 >gi|108805936|ref|YP_645873.1| radical SAM family protein [Rubrobacter xylanophilus DSM 9941] gi|108767179|gb|ABG06061.1| Radical SAM [Rubrobacter xylanophilus DSM 9941] Length = 367 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 18/117 (15%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL + + + LI+E E + Y + Sbjct: 23 GCNLRCAHCLSASGVR--------------RENELTTGEAKRLIDEW---AEMQVFYINV 65 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146 GGEPL + D L+ +RG + TNGT+ + DWI + + G Sbjct: 66 GGGEPLTRPDFFELMDYCLERGIGVKFSTNGTLVDDEAADWISSRDYLDVQVSLDGA 122 >gi|160902510|ref|YP_001568091.1| radical SAM domain-containing protein [Petrotoga mobilis SJ95] gi|160360154|gb|ABX31768.1| Radical SAM domain protein [Petrotoga mobilis SJ95] Length = 468 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 18/91 (19%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL C++C + K + ++L ++E+ ++ + Sbjct: 135 GCNL-----------NCKYC---YRREDIRKSTFIDSEKLKVMVEKL---NKETLSMVEI 177 Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 TGGEP L +++ + +RG + V TNG Sbjct: 178 TGGEPTLHPHFTEILKYILERGITVGVLTNG 208 >gi|94312101|ref|YP_585311.1| radical SAM family protein [Cupriavidus metallidurans CH34] gi|93355953|gb|ABF10042.1| Heme d1 biosynthesis protein NirJ [Cupriavidus metallidurans CH34] Length = 387 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 25/112 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + DTDF G T V + D ++ + +L+ Sbjct: 36 CNLNCKHCYSTSA------DTDFKGELSTG----EVMAVLDQLKAARVPA------LILS 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGT--------IEPPQGIDWICVS 134 GGEPLL+ D+ + + GF +++ +NGT G D++ VS Sbjct: 80 GGEPLLRPDLYEIAARARELGFHLSLSSNGTLLDAAHAARLAAAGFDYVGVS 131 >gi|304313947|ref|YP_003849094.1| glycyl radical-activating enzyme [Methanothermobacter marburgensis str. Marburg] gi|302587406|gb|ADL57781.1| predicted glycyl radical-activating enzyme [Methanothermobacter marburgensis str. Marburg] Length = 231 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 27/121 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +F +GCN +C +C G ++ + + +E+ + Sbjct: 21 IF--TAGCNF-----------RCPYC---HNPELIDGGVEADLSDILEDMEKYTDFVDA- 63 Query: 85 GRYCVLTGGEPLLQVDVPLIQALNKR--GFEIAVETNG-----TIEPPQGIDWICVSPKA 137 V++GGEPLLQVD + + R G ++TNG +D++ V KA Sbjct: 64 ---VVVSGGEPLLQVDDVEVVLQHARSLGLHTKLDTNGYSPGALRRLLPLLDYVAVDVKA 120 Query: 138 G 138 Sbjct: 121 P 121 >gi|118579348|ref|YP_900598.1| radical SAM domain-containing protein [Pelobacter propionicus DSM 2379] gi|118502058|gb|ABK98540.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379] Length = 497 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 7/81 (8%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQ 105 C +C + K D+ D+I + G R ++ GGEP L + +++ Sbjct: 42 CIYC---YASQASAKRDDLTRDEFLDIIGQARELG---ARKIIILGGEPTLYPHLMEMVR 95 Query: 106 ALNKRGFEIAVETNGTIEPPQ 126 + G ++ + TNG PQ Sbjct: 96 HIRSTGMDVELFTNGANVTPQ 116 >gi|261253301|ref|ZP_05945874.1| pyruvate formate-lyase activating enzyme [Vibrio orientalis CIP 102891] gi|260936692|gb|EEX92681.1| pyruvate formate-lyase activating enzyme [Vibrio orientalis CIP 102891] Length = 215 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 49/140 (35%), Gaps = 15/140 (10%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101 +C++C DT G V+++ + G +GGE +LQ + Sbjct: 2 RCKYCHNRDT----WDTHDGKEVTVEEIISEAKSYRHFMNASGGGVTCSGGEAMLQPEFV 57 Query: 102 -PLIQALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159 +A + G ++TNG I + ID + DL + + +K + Sbjct: 58 RDFFRAAHNEGIHTCLDTNGYIRKHTEVIDEVL----EATDLVMLDLKHMKDEVHHDFIG 113 Query: 160 PENYIGFDFERFSLQPMDGP 179 N DF R L + Sbjct: 114 VSNKRTLDFAR-YLHKIGQK 132 >gi|326390978|ref|ZP_08212528.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacter ethanolicus JW 200] gi|325993020|gb|EGD51462.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoanaerobacter ethanolicus JW 200] Length = 228 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 20/102 (19%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 VF SGCN +C +C ++ G + + D ++++ E Sbjct: 19 ATVFV--SGCNF-----------KCPYCHNSYLIQIRE--GIRSEKEFFDYLKKRANLIE 63 Query: 83 KEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123 +TGGEP L I+ + F + ++TNG+ Sbjct: 64 G----VCITGGEPTLWKGLQDFIKNIKDLNFSVKLDTNGSRP 101 >gi|302342136|ref|YP_003806665.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfarculus baarsii DSM 2075] gi|301638749|gb|ADK84071.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfarculus baarsii DSM 2075] Length = 247 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 42/128 (32%), Gaps = 35/128 (27%) Query: 16 EGGHAGRVAV-------FC--R--------FSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58 EG A A+ F R GCN C +C Sbjct: 11 EGVGAALPAIKGFLETSFVDWRGCIAAVLFLPGCNF-----------ACPYC---HNHAL 56 Query: 59 GTKGGRYNVDQLADLIEEQWI-TGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAV 116 + Y L D++ G +G V++GGEP + Q L+ + GF + + Sbjct: 57 AVEPESYQTRPLEDVLARLRPFVGWIDG--VVVSGGEPTVNQGLERLLALIKAEGFAVKL 114 Query: 117 ETNGTIEP 124 +TNG Sbjct: 115 DTNGHRPA 122 >gi|154509285|ref|ZP_02044927.1| hypothetical protein ACTODO_01810 [Actinomyces odontolyticus ATCC 17982] gi|293189709|ref|ZP_06608425.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces odontolyticus F0309] gi|153798919|gb|EDN81339.1| hypothetical protein ACTODO_01810 [Actinomyces odontolyticus ATCC 17982] gi|292821299|gb|EFF80242.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces odontolyticus F0309] Length = 292 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 50/137 (36%), Gaps = 30/137 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF +GC L +C +C DT F+ G + +L I Sbjct: 68 RMTVF--LNGCPL-----------RCLYCHNPDT-FLMKDGAP---VSDTELLSRIARYR 110 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP---LIQALNKRGFEIAVETNGTI------EPPQGID 129 L+GGE L+Q L+ A + G ++T+G + E ID Sbjct: 111 RIFRTTQGGITLSGGEVLMQPQFAKRILMGA-KEMGVHTCIDTSGFLGANCDDEMLDAID 169 Query: 130 WICVSPKAGCDLKIKGG 146 + + K+G + K Sbjct: 170 LVLLDVKSGNEETYKKA 186 >gi|282901591|ref|ZP_06309510.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Cylindrospermopsis raciborskii CS-505] gi|281193517|gb|EFA68495.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Cylindrospermopsis raciborskii CS-505] Length = 248 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C +C DT G V +L IE+ Sbjct: 26 IRFVIFTQGC-----------LLRCLYCHNPDTR----DMKTGKETTVGELVTEIEKYRS 70 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 + G ++GGEPLLQ + + + K A++T+G Sbjct: 71 YMKFTGGGVTISGGEPLLQPEFVREVFRQCQKLNIHTALDTSG 113 >gi|229088605|ref|ZP_04220259.1| Radical SAM domain protein [Bacillus cereus Rock3-44] gi|228694712|gb|EEL48034.1| Radical SAM domain protein [Bacillus cereus Rock3-44] Length = 292 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 20/92 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC + +V++ + +++ + + Sbjct: 15 CNL-----------ACSFC-----PPTERQKQFLSVEEFSKRLDQIKPHTDYIYLHVK-- 56 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 57 -GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 87 >gi|124027035|ref|YP_001012355.1| pyruvate-formate lyase-activating enzyme - protein [Hyperthermus butylicus DSM 5456] gi|123977729|gb|ABM80010.1| pyruvate-formate lyase-activating enzyme - conserved archaeal protein [Hyperthermus butylicus DSM 5456] Length = 254 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 26/102 (25%) Query: 29 FSGCNLWSGREQDRLSAQ-----CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 GCNL + A+ CR+ +D+L + + Sbjct: 28 LCGCNLRCPFCHNWKLAEMLPGTCRW---------------AKLDELVEALS--GAARLV 70 Query: 84 EGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 + + TGGEPLLQ L++A +K G ++ TN T+ Sbjct: 71 DVLHV--TGGEPLLQPGRLRGLLEASHKLGLGNSINTNCTLP 110 >gi|170696802|ref|ZP_02887909.1| molybdenum cofactor biosynthesis protein A [Burkholderia graminis C4D1M] gi|170138291|gb|EDT06512.1| molybdenum cofactor biosynthesis protein A [Burkholderia graminis C4D1M] Length = 369 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 25/136 (18%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + +++ L G ++ R LTGGE Sbjct: 45 DRCNFRCVYCMPRAVFDKDYAFLPHS--ALLTFEEIERLARLFVAHGVEKIR---LTGGE 99 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ ++ LI+ L + R ++ + TNG++ G+ + VS A D Sbjct: 100 PLLRKNLEFLIERLAQLTTPAGRPLDLTLTTNGSLLARKARSLKDAGLTRVTVSLDALDD 159 Query: 141 LKIKGGQELKLVFPQV 156 + + V Sbjct: 160 TLFRRMNDADFAVADV 175 >gi|56551923|ref|YP_162762.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Zymomonas mobilis subsp. mobilis ZM4] gi|260752522|ref|YP_003225415.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543497|gb|AAV89651.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Zymomonas mobilis subsp. mobilis ZM4] gi|258551885|gb|ACV74831.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 200 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 26/125 (20%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 VFC GC S C +C + I + G R + + D +E++ Sbjct: 24 VATVFC--QGC-----------SWDCPYCHNQSLRPAIDNS-GNRIPWEDVLDFLEQRRG 69 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT-----IEPPQGIDWICV 133 + V +GGEP LQ +P +Q + G +I + T G + W+ Sbjct: 70 LLDG----VVFSGGEPTLQAALPEAMQIVRDMGLKIGLHTAGMKPERFRPLLPLVTWVGF 125 Query: 134 SPKAG 138 KA Sbjct: 126 DIKAP 130 >gi|11499897|ref|NP_071141.1| hypothetical protein AF2316 [Archaeoglobus fulgidus DSM 4304] gi|2648203|gb|AAB88940.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 518 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 11/98 (11%) Query: 32 CN-------LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 CN L + +R C +C + G ++Q+ +++ + Sbjct: 92 CNNHKSHTALLNIVLTNRCDLACWYC-FFYARRAGYVYEP-TIEQIREMVRKAKNMKPIG 149 Query: 85 GRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120 LTGGEP L+ D+ +I+ + + G+ I + TNG Sbjct: 150 CNAVQLTGGEPTLRDDLIDIIRMIKEEGYDHIQLNTNG 187 >gi|296130601|ref|YP_003637851.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Cellulomonas flavigena DSM 20109] gi|296022416|gb|ADG75652.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Cellulomonas flavigena DSM 20109] Length = 250 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 39/132 (29%), Gaps = 36/132 (27%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIE 75 F GC +C +C DT G+ + Sbjct: 52 VATAF--LQGCP-----------WRCTYCHNSAILDTRLPGVVPWS-----------RVA 87 Query: 76 EQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE-----PPQGID 129 + VL+GGEP Q V + + + GF + + T G +D Sbjct: 88 DLLRRRRGLLDGLVLSGGEPTRQAGVVAAAREVKEAGFLVGLHTAGAYPSRLRELLPYVD 147 Query: 130 WICVSPKAGCDL 141 W+ + KA L Sbjct: 148 WVGLDVKAPARL 159 >gi|311106097|ref|YP_003978950.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Achromobacter xylosoxidans A8] gi|310760786|gb|ADP16235.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Achromobacter xylosoxidans A8] Length = 270 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 28/127 (22%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G++A VF +GC +C +C T+ RY+ + +E + Sbjct: 68 GQLAAVVFI--AGCP-----------WRCHYC---HNVELQTRAARYDWRETRAFLETRK 111 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQG-----IDWIC 132 + V +GGEPL + +P +I+ + + G+ + + T G +DW+ Sbjct: 112 GLLDA----IVFSGGEPLSEPRLPQMIRDVRRMGYRVGLHTAGIYPLRLADVLRYLDWVG 167 Query: 133 VSPKAGC 139 + KA Sbjct: 168 LDIKADA 174 >gi|254779259|ref|YP_003057364.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori B38] gi|254001170|emb|CAX29129.1| Molybdenum cofactor biosynthesis protein A [Helicobacter pylori B38] Length = 321 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 31/174 (17%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLLQV-DV 101 +C++C + T ++ ++L +++E I ++ + +TGGEPLL+ Sbjct: 24 RCQYC------MPATPLDFFDDEELLPLDNVLEFLKIAIDEGVKKIRITGGEPLLRKGLD 77 Query: 102 PLIQALNKRGFEIA--VETNGTIEPP-------QGIDWICV---SPKAGCDLKIKGGQEL 149 I L+ E+A + TNG + G+ + V S K+ LKI L Sbjct: 78 EFIAKLHAYNKEVALVLSTNGFLLKKMAKGLKNAGLSRVNVSLDSLKSDRVLKISQKDAL 137 Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQ 203 K + S + + + ++ M G +E L + Y S+Q Sbjct: 138 KNTLEGIEESLKVGLKL---KLNMVVMKGVNDDEILEL-LEYAKNR-----SIQ 182 >gi|160940560|ref|ZP_02087904.1| hypothetical protein CLOBOL_05455 [Clostridium bolteae ATCC BAA-613] gi|158436520|gb|EDP14287.1| hypothetical protein CLOBOL_05455 [Clostridium bolteae ATCC BAA-613] Length = 355 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 14/104 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C++C + R+++ L ++ R+ +TGGEPL++ D Sbjct: 21 DRCNLRCKYC----MPYGVECVPRWDILSLEEIQAVGICAAGLGIRHIKVTGGEPLVRRD 76 Query: 101 -VPLIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134 L++ L G E + + TNG + GID I +S Sbjct: 77 CCQLVKQLKSTPGIEKVTITTNGVLLERYLDDLAEAGIDGINIS 120 >gi|153953731|ref|YP_001394496.1| Act [Clostridium kluyveri DSM 555] gi|219854350|ref|YP_002471472.1| hypothetical protein CKR_1007 [Clostridium kluyveri NBRC 12016] gi|146346612|gb|EDK33148.1| Act [Clostridium kluyveri DSM 555] gi|219568074|dbj|BAH06058.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 242 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC L +C FC DT +G ++L + + + Sbjct: 22 VF--FQGCRL-----------RCAFCHNPDT----WIMDEGMEIEANELIKKVLKFKVYF 64 Query: 82 EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 EK G +GG+PL+Q + + + A++T+G Sbjct: 65 EKSGGGVTCSGGDPLMQPEFLLEFFKLCKENNINTALDTSG 105 >gi|241761762|ref|ZP_04759848.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373676|gb|EER63236.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 200 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 26/125 (20%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 VFC GC S C +C + I + G R + + D +E++ Sbjct: 24 VATVFC--QGC-----------SWDCPYCHNQSLRPAIDNS-GNRIPWEDVLDFLEQRRG 69 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT-----IEPPQGIDWICV 133 + V +GGEP LQ +P +Q + G +I + T G + W+ Sbjct: 70 LLDG----VVFSGGEPTLQAALPEAMQIVRDMGLKIGLHTAGMKPERFRPLLPLVTWVGF 125 Query: 134 SPKAG 138 KA Sbjct: 126 DIKAP 130 >gi|88602761|ref|YP_502939.1| radical SAM family protein [Methanospirillum hungatei JF-1] gi|88188223|gb|ABD41220.1| GTP cyclohydrolase subunit MoaA [Methanospirillum hungatei JF-1] Length = 292 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 17/93 (18%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 SGCNL +C +C +G L D+ + G R Sbjct: 20 SGCNL-----------RCVYC-----HREGETKPE-TPLSLEDIRAILDVAGNIGIRTVK 62 Query: 90 LTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 TGGEPLL+ D+ I G E ++ TNGT+ Sbjct: 63 FTGGEPLLREDIVEIIRSVPPGIESSMTTNGTL 95 >gi|312890091|ref|ZP_07749635.1| pyruvate formate-lyase activating enzyme [Mucilaginibacter paludis DSM 18603] gi|311297623|gb|EFQ74748.1| pyruvate formate-lyase activating enzyme [Mucilaginibacter paludis DSM 18603] Length = 261 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 25/108 (23%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLAD-LIEEQWIT 80 VF GC +C +C D+ I G + +L + E+ Sbjct: 42 VFV--QGC-----------QFRCLYCHNPDS----IDVKGGSLVEITELVKRAVREKNYF 84 Query: 81 GEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126 G + G ++GGEPLLQ + L+++G +++NG + P+ Sbjct: 85 GTEGG--VTVSGGEPLLQRSKLTSFFKLLHQQGINTCLDSNGRLNTPE 130 >gi|295102257|emb|CBK99802.1| pyruvate formate-lyase 1-activating enzyme [Faecalibacterium prausnitzii L2-6] Length = 250 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 27/118 (22%) Query: 8 EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66 E F ++ G G VF GC + +C++C +G G + Sbjct: 14 ETFGSVDGPGVRFV----VF--LQGC-----------ALRCKYCHNPETWAEG--GEEWT 54 Query: 67 VDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 VD+L + W G+ ++GGEPL Q+ + +G A++T G Sbjct: 55 VDKL---FQRAWRYRNYWGKRGGITVSGGEPLRQMEFLTAFFELARSKGVHTALDTAG 109 >gi|261368951|ref|ZP_05981834.1| molybdenum cofactor biosynthesis protein A [Subdoligranulum variabile DSM 15176] gi|282568904|gb|EFB74439.1| molybdenum cofactor biosynthesis protein A [Subdoligranulum variabile DSM 15176] Length = 320 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 13/104 (12%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +CR+C G +++ ++ + G + LTGGEPL++ + Sbjct: 18 DRCNLRCRYCMPAEGVPLRPHGEILRYEEIVEIAKAALALGIDTFK---LTGGEPLVRRE 74 Query: 101 VP-LIQALNKRG--FEIAVETNGTI-------EPPQGIDWICVS 134 VP L+ AL ++ + TNG + G+D + VS Sbjct: 75 VPALVAALKALPGTRQVTLTTNGLLLGAQLDALLAAGLDAVNVS 118 >gi|218551057|ref|YP_002384848.1| pyruvate formate lyase II activase [Escherichia fergusonii ATCC 35469] gi|218358598|emb|CAQ91246.1| pyruvate formate lyase II activase [Escherichia fergusonii ATCC 35469] Length = 292 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---EVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I G L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRASGGGVTLSGGEVLMQAEFATRF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195 >gi|167749774|ref|ZP_02421901.1| hypothetical protein EUBSIR_00741 [Eubacterium siraeum DSM 15702] gi|167657257|gb|EDS01387.1| hypothetical protein EUBSIR_00741 [Eubacterium siraeum DSM 15702] Length = 237 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 19/125 (15%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 RF GC L G + + + G V + + Sbjct: 19 VRFVLFLQGCPLRCGYCHNPETR------------DASGGKTATVKDVMQKVLRCRNYFG 66 Query: 83 KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140 K G ++GGEPL+Q L + ++G ++T+G I + + V+ D Sbjct: 67 KNGG-ITVSGGEPLMQAKFVTELFKECKRQGINTCLDTSGCIMNDDVTELLKVTDLCMLD 125 Query: 141 LKIKG 145 +K+ Sbjct: 126 IKMTN 130 >gi|126460311|ref|YP_001056589.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|126250032|gb|ABO09123.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548] Length = 380 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 18/96 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C ++ + + D++++ E + T Sbjct: 46 CNL-----------RCLHC---YIDAGEAEANELTTKEALDVVDQM---AEVGVPLILFT 88 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ 126 GGEPL++ D + Q RG ++ + TNGT+ P+ Sbjct: 89 GGEPLVRRDFFEIAQYARDRGIKLVLSTNGTLITPE 124 >gi|83647117|ref|YP_435552.1| Fe-S oxidoreductase [Hahella chejuensis KCTC 2396] gi|83635160|gb|ABC31127.1| predicted Fe-S oxidoreductase [Hahella chejuensis KCTC 2396] Length = 378 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 14/111 (12%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + R + CR C + + G Q+ D +E+ G +L+G Sbjct: 19 PVVIWNLIRRCNLTCRHCYS--ISADIDFPGELTTAQVFDTLEDLKQMG---APAVILSG 73 Query: 93 GEPLLQVDVPLIQA-LNKRGFEIAVETNGTIE--------PPQGIDWICVS 134 GEPLL+ D+ LI A G + + +NGT+ G D++ VS Sbjct: 74 GEPLLRKDIFLIGAYAKSLGLYVGLSSNGTLMNRDTAAAISDTGFDYVGVS 124 >gi|50085587|ref|YP_047097.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter sp. ADP1] gi|49531563|emb|CAG69275.1| coenzyme PQQ synthesis protein E (Coenzyme PQQ synthesis protein III) [Acinetobacter sp. ADP1] Length = 391 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C D+ ++ + D+ D+ + G + + Sbjct: 17 PLWLLAELTYRCPLQCAYCSNPLDYAAVK----QELSTDEWKDVFRQARAMGSVQLGF-- 70 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 +GGEPLL Q LI+ ++ GF + T+G Sbjct: 71 -SGGEPLLRQDLSELIKYAHELGFYTNLITSG 101 >gi|116054237|ref|YP_788681.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa UCBPP-PA14] gi|313111857|ref|ZP_07797650.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa 39016] gi|115589458|gb|ABJ15473.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa UCBPP-PA14] gi|310884152|gb|EFQ42746.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa 39016] Length = 387 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 27/113 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + D+DF G ++ I++ G R +L+ Sbjct: 37 CNLTCKHCYSTSA------DSDF-------RGELETAEILRGIDDLRAAG---VRVLILS 80 Query: 92 GGEPLLQVDVPLIQALNKR--GFEIAVETNGTIEPPQGI--------DWICVS 134 GGEPL+ D+ I A + R G +A+ +NGT+ I D++ +S Sbjct: 81 GGEPLMHPDLFEIAA-HARQAGMFVALSSNGTLIDEGNIQRVAEARFDYVGIS 132 >gi|257051257|ref|YP_003129090.1| molybdenum cofactor biosynthesis protein A [Halorhabdus utahensis DSM 12940] gi|256690020|gb|ACV10357.1| molybdenum cofactor biosynthesis protein A [Halorhabdus utahensis DSM 12940] Length = 375 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 24/154 (15%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + C +C DT G + D++ +IE + + TGGE Sbjct: 19 DRCNFDCVYCHNEGLGDTR--GPMAPSEEELSTDEVVRVIE---VAADHGVEAVKFTGGE 73 Query: 95 PLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154 P+L+ D+ I G E ++ TNGT P + + + ++ Sbjct: 74 PMLRTDLGEIVRRTPAGVETSMTTNGTFLPDRAAE-------------LADAGLERVNVS 120 Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 Q + PE++ Q + G + LA Sbjct: 121 QDALDPEDFATLTQSGAYDQVLSGVEAALDAGLA 154 >gi|222053130|ref|YP_002535492.1| radical SAM protein [Geobacter sp. FRC-32] gi|221562419|gb|ACM18391.1| Radical SAM domain protein [Geobacter sp. FRC-32] Length = 359 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 17/95 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL CR C +D +G + D+ L++E + Sbjct: 15 TQKCNLKC--------VHCR-CSSDLTSSEGD----FTTDEGKKLLKE---IADFSKPVV 58 Query: 89 VLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122 VL+GGEPL+ Q L G + + TNG + Sbjct: 59 VLSGGEPLMRQDIFELAGYGTSLGLRMCMATNGAL 93 >gi|254237264|ref|ZP_04930587.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa C3719] gi|254243604|ref|ZP_04936926.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa 2192] gi|42821599|dbj|BAD11787.1| nirJ [Burkholderia cepacia] gi|126169195|gb|EAZ54706.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa C3719] gi|126196982|gb|EAZ61045.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa 2192] Length = 387 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 27/113 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + D+DF G ++ I++ G R +L+ Sbjct: 37 CNLTCKHCYSTSA------DSDF-------RGELETAEILRGIDDLRAAG---VRVLILS 80 Query: 92 GGEPLLQVDVPLIQALNKR--GFEIAVETNGTIEPPQGI--------DWICVS 134 GGEPL+ D+ I A + R G +A+ +NGT+ I D++ +S Sbjct: 81 GGEPLMHPDLFEIAA-HARQAGMFVALSSNGTLIDEGNIQRVAEARFDYVGIS 132 >gi|282163554|ref|YP_003355939.1| hypothetical protein MCP_0884 [Methanocella paludicola SANAE] gi|282155868|dbj|BAI60956.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 366 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 14/91 (15%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL Q D+ +N+ Q +I++ G L Sbjct: 21 GCNLHCRHCWIAPKYQ----DSKHTY----PSLPFNLFQ--SIIKQARPLGLAA---VKL 67 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 TGGEPL+ D+ +++ + + + +ETNG Sbjct: 68 TGGEPLMHPDINNILELIKQENLGLGIETNG 98 >gi|168186105|ref|ZP_02620740.1| putative pyruvate formate-lyase 3-activating enzyme [Clostridium botulinum C str. Eklund] gi|169296068|gb|EDS78201.1| putative pyruvate formate-lyase 3-activating enzyme [Clostridium botulinum C str. Eklund] Length = 310 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118 G + +V ++ + +++ ++ + G L+GGEPL+Q + LI+ G A+ET Sbjct: 110 GEKRSVKEVVEDVKKDYVQFRRSGGGVTLSGGEPLMQPRFILNLIKGFKAVGLNTAIET 168 >gi|218889252|ref|YP_002438116.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa LESB58] gi|218769475|emb|CAW25235.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa LESB58] Length = 387 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 27/113 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + D+DF G ++ I++ G R +L+ Sbjct: 37 CNLTCKHCYSTSA------DSDF-------RGELETAEILRGIDDLRAAG---VRVLILS 80 Query: 92 GGEPLLQVDVPLIQALNKR--GFEIAVETNGTIEPPQGI--------DWICVS 134 GGEPL+ D+ I A + R G +A+ +NGT+ I D++ +S Sbjct: 81 GGEPLMHPDLFEIAA-HARQAGMFVALSSNGTLIDEGNIQRVAEARFDYVGIS 132 >gi|15595708|ref|NP_249202.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa PAO1] gi|107099497|ref|ZP_01363415.1| hypothetical protein PaerPA_01000509 [Pseudomonas aeruginosa PACS2] gi|9946376|gb|AAG03900.1|AE004488_4 heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa PAO1] gi|1783281|dbj|BAA12681.1| NirJ [Pseudomonas aeruginosa] Length = 387 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 27/113 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + D+DF G ++ I++ G R +L+ Sbjct: 37 CNLTCKHCYSTSA------DSDF-------RGELETAEILRGIDDLRAAG---VRVLILS 80 Query: 92 GGEPLLQVDVPLIQALNKR--GFEIAVETNGTIEPPQGI--------DWICVS 134 GGEPL+ D+ I A + R G +A+ +NGT+ I D++ +S Sbjct: 81 GGEPLMHPDLFEIAA-HARQAGMFVALSSNGTLIDEGNIQRVAEARFDYVGIS 132 >gi|317473349|ref|ZP_07932644.1| glycyl-radical enzyme activating protein family [Anaerostipes sp. 3_2_56FAA] gi|316899185|gb|EFV21204.1| glycyl-radical enzyme activating protein family [Anaerostipes sp. 3_2_56FAA] Length = 303 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 49/155 (31%), Gaps = 50/155 (32%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------QCRFC-------- 50 F T G+G VF F GC L Q+ +C C Sbjct: 11 FSTHDGDGIRT---TVF--FKGCPLSCVWCQNPEGISLRRRPLYFKNRCIHCKMCVEESV 65 Query: 51 --------DTDFVGIQGTKGGRYNVD--------------QLADLIEEQWITGEKEGRY- 87 D F+ I + + ++ + +++EE Sbjct: 66 SGGMKFRGDKLFMNIDSPEDWEHLIELCPSGALAMDSREYSVKEVMEEIRKDMVFYRHDG 125 Query: 88 -CVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119 L+GGEPL Q + L ++ K G A+ET+ Sbjct: 126 GVTLSGGEPLHQSEFALEILKQCKKEGIHTAIETS 160 >gi|78043321|ref|YP_359656.1| molybdenum cofactor biosynthesis protein MoaA [Carboxydothermus hydrogenoformans Z-2901] gi|123576645|sp|Q3ADX8|MOAA_CARHZ RecName: Full=Molybdenum cofactor biosynthesis protein A gi|77995436|gb|ABB14335.1| molybdenum cofactor biosynthesis protein MoaA [Carboxydothermus hydrogenoformans Z-2901] Length = 321 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 21/182 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N D+ + C +C + + G +++ +++ G K+ R +TG Sbjct: 10 NYLRISVTDKCNLNCFYCK-PGNFQEFSPGDILTFEEILEVVRAFLPLGLKKVR---ITG 65 Query: 93 GEPLLQVDVP-LIQALNKR-GF-EIAVETNGTIEPPQGIDW-------ICVSPKAGCDLK 142 GEPL++ ++ LI+ + G ++A+ TNG + P D + S + K Sbjct: 66 GEPLVRKNLLYLIENIAALPGIDDLALTTNGILFPRYARDLKSAGLSRVNFSLDSLNPDK 125 Query: 143 ---IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP-KW 198 I GG ELK V +N++ E + + + + G L+E + + F+ P W Sbjct: 126 FRSITGGGELKNVLEAINLALE--LDLTPVKINTVLLRGINLDEIDAF-VDFIFRYPVHW 182 Query: 199 RL 200 R Sbjct: 183 RF 184 >gi|155241762|gb|ABT18044.1| heme d1 biosynthesis protein [Heliobacillus mobilis] Length = 391 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 17/96 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C + D+D + G + I+E + +L+ Sbjct: 47 CNLHC--------IHC-YSDSDEIDYPGE----LTTQEAIKFIDEL---ADFNVPVLLLS 90 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 GGEPL++ D+ L+ +KR + TNGT+ P Sbjct: 91 GGEPLMRPDIFELVAHASKRNVRVTFSTNGTLITPD 126 >gi|150400192|ref|YP_001323959.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanococcus vannielii SB] gi|150012895|gb|ABR55347.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanococcus vannielii SB] Length = 236 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 30/125 (24%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF + CN++ G Q+ T + + ++ + ++ + Sbjct: 22 VF--LAECNMYCGYCQNYEFI------TKNIS-------EMSAKEVFESMDLMFADA--- 63 Query: 85 GRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSP 135 V++GGEP LQ + L + ++ F + ++TNGT + ID++ + Sbjct: 64 ---LVISGGEPTLQPEAVKELCKLAKEKNFPVKLDTNGTNPEVIKKLVSEKLIDYVALDV 120 Query: 136 KAGCD 140 K + Sbjct: 121 KCSFE 125 >gi|118443556|ref|YP_878876.1| pyruvate formate-lyase [Clostridium novyi NT] gi|118134012|gb|ABK61056.1| pyruvate formate-lyase [Clostridium novyi NT] Length = 310 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118 G +V ++ D +++ ++ + G L+GGEPL+Q L++ + G A+ET Sbjct: 110 GEEKSVKEVIDNVKKDFVQFRRSGGGVTLSGGEPLMQPSFALNLLKGFKELGINTAIET 168 >gi|313893872|ref|ZP_07827438.1| pyruvate formate-lyase 1-activating enzyme [Veillonella sp. oral taxon 158 str. F0412] gi|313441436|gb|EFR59862.1| pyruvate formate-lyase 1-activating enzyme [Veillonella sp. oral taxon 158 str. F0412] Length = 258 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 28/114 (24%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEK 83 VF GC + +C +C + + + V++L D E Sbjct: 23 VF--LQGCPM-----------RCAYCHNPDTWNEISDDAKFMTVEELWDQYERNRQFYTN 69 Query: 84 EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP 135 G +TGGE L+Q+D L +R ++T+G IC P Sbjct: 70 GG--ITVTGGEALMQIDFVTELFTYFRERNVHTCLDTSG----------ICFDP 111 >gi|222056745|ref|YP_002539107.1| hopanoid biosynthesis associated radical SAM protein HpnH [Geobacter sp. FRC-32] gi|221566034|gb|ACM22006.1| hopanoid biosynthesis associated radical SAM protein HpnH [Geobacter sp. FRC-32] Length = 332 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + DT ++++ + ++E +T Sbjct: 38 CNLACSGCGRIRE----YADTIQ--------EMMSLEECLNSVDE------CPAPVVTVT 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEP L + LI + KRG I + TN + + +D + P ++ + G +E Sbjct: 80 GGEPFLYPHIFDLIDGVLKRGKHIYLCTN-ALLLEKALDKMRPHPNFTLNVHMDGMEE 136 >gi|61214991|sp|Q6F9I9|PQQE_ACIAD RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E Length = 386 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C D+ ++ + D+ D+ + G + + Sbjct: 12 PLWLLAELTYRCPLQCAYCSNPLDYAAVK----QELSTDEWKDVFRQARAMGSVQLGF-- 65 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 +GGEPLL Q LI+ ++ GF + T+G Sbjct: 66 -SGGEPLLRQDLSELIKYAHELGFYTNLITSG 96 >gi|163790380|ref|ZP_02184811.1| pyruvate formate-lyase activating enzyme [Carnobacterium sp. AT7] gi|159874284|gb|EDP68357.1| pyruvate formate-lyase activating enzyme [Carnobacterium sp. AT7] Length = 253 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 41/133 (30%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +C FC DT Sbjct: 12 TESFGSVDGPG---------IRFVTFMQGC-----------RMRCEFCHNPDT----WNM 47 Query: 60 TKGGRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIA 115 G Y DQL A+ + + G K G ++GGEPLL +D LI+ ++G Sbjct: 48 GGGTPYTADQLLAEALSYREYWGSKGG--ITVSGGEPLLHIDF-LIEYFRKAKEQGVHTT 104 Query: 116 VETNG---TIEPP 125 ++T G T + P Sbjct: 105 LDTCGQPFTYDEP 117 >gi|332044074|gb|EGI80269.1| Radical SAM domain protein [Lacinutrix algicola 5H-3-7-4] Length = 471 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 19/102 (18%) Query: 46 QCRFCDTDFVGIQGTK-----GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 +C+FC F Q K G + ++E+ G ++ GGEPLL Sbjct: 195 RCKFC---FATFQDVKQTILPKGHLPESEALKVVEQIANAGFEK---ITFAGGEPLLCKW 248 Query: 101 VP-LIQALNKRGFEIAVETNGT-------IEPPQGIDWICVS 134 +P LI+ + G + TNG+ E +DWI VS Sbjct: 249 LPNLIKRAKQLGMTTMIVTNGSKLTDAFLKENTAYLDWIAVS 290 >gi|295104012|emb|CBL01556.1| pyruvate formate-lyase 1-activating enzyme [Faecalibacterium prausnitzii SL3/3] Length = 250 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 23/116 (19%) Query: 8 EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66 E F ++ G G VF GC + +C++C +G G + Sbjct: 14 ESFGSVDGPGVRFV----VF--LQGC-----------ALRCKYCHNPETWAEG--GEAWT 54 Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 + L + K+G ++GGEPL Q+D +G A++T G Sbjct: 55 AEALFQRVYRYRNYWGKKGG-ITVSGGEPLRQMDFLTEFFTLARAKGVHTALDTAG 109 >gi|229166606|ref|ZP_04294358.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH621] gi|228616860|gb|EEK73933.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH621] Length = 338 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 73/177 (41%), Gaps = 33/177 (18%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D + + + + D++ + G ++ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGRD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVSPKAGCDLK 142 GEPLL+ D+P LIQ LN+ G E I + TNG++ D + VS + + + Sbjct: 75 GEPLLRKDLPELIQRLNEIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVSLDSLNEER 134 Query: 143 IKGGQ----ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 ++K V + + E + +Q G E+ +A Y +N Sbjct: 135 FSYLNGNRSKVKTVLAGIQAAAEAGMKIKM-NMVVQ--KGKNEEDIVQMA-EYFKEN 187 >gi|240145227|ref|ZP_04743828.1| molybdenum cofactor biosynthesis protein A [Roseburia intestinalis L1-82] gi|257202691|gb|EEV00976.1| molybdenum cofactor biosynthesis protein A [Roseburia intestinalis L1-82] Length = 345 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 17/161 (10%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C++C + N+ ++++ R+ LTGGEPL++ Sbjct: 18 DRCNLRCKYC----MPGDIETTDMENLLTYEEIVQVTETAAALGIRHIRLTGGEPLVRRG 73 Query: 101 -VPLIQALNK-RGFE-IAVETNGTIEP-------PQGIDWICVSPKAGCDL---KIKGGQ 147 V L++ + G E + + TNG + G+D + VS + ++ G Sbjct: 74 CVDLVEKIKNVSGIETVGMTTNGVLLAEYAKALKEAGLDSVNVSLDTLDETEFQRLTGRD 133 Query: 148 ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 EL V +N + E I Q +D + + TN Sbjct: 134 ELNAVLAGINAAKEAQIPVKINTVHYQHLDWKSILDYTNRV 174 >gi|152988621|ref|YP_001346007.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa PA7] gi|150963779|gb|ABR85804.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa PA7] Length = 387 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 27/113 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + D+DF G ++ I++ G R +L+ Sbjct: 37 CNLTCKHCYSTSA------DSDF-------RGELETAEILRGIDDLRTAG---VRVLILS 80 Query: 92 GGEPLLQVDVPLIQALNKR--GFEIAVETNGTIEPPQGI--------DWICVS 134 GGEPL+ D+ I A + R G +A+ +NGT+ I D++ +S Sbjct: 81 GGEPLMHPDLFEIAA-HARQAGMFVALSSNGTLIDEGNIQRVAEARFDYVGIS 132 >gi|84393746|ref|ZP_00992494.1| pyruvate formate-lyase 1 activating enzyme [Vibrio splendidus 12B01] gi|84375608|gb|EAP92507.1| pyruvate formate-lyase 1 activating enzyme [Vibrio splendidus 12B01] Length = 246 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C +C DT G V+++ + + Sbjct: 25 VF--LQGC-----------LMRCMYCHNRDT----WDLHDGKEVTVEEIINEAKSYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 + G +GGE +LQ + QA G ++TNG Sbjct: 68 KASGGGITCSGGEAMLQPEFVRDFFQAAQAEGIHTCLDTNG 108 >gi|329926072|ref|ZP_08280683.1| radical SAM domain protein [Paenibacillus sp. HGF5] gi|328939470|gb|EGG35823.1| radical SAM domain protein [Paenibacillus sp. HGF5] Length = 333 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 20/92 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC K V+ A ++E + Sbjct: 57 CNL-----------ACTFC-----PPTERKANFIKVEDFARRLDEIKPHTSYIYLHVK-- 98 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 99 -GEPLLHPKIDELLDISHEKGFKVNITTNGTL 129 >gi|258539630|ref|YP_003174129.1| pyruvate formate-lyase activating enzyme [Lactobacillus rhamnosus Lc 705] gi|257151306|emb|CAR90278.1| Pyruvate formate-lyase activating enzyme [Lactobacillus rhamnosus Lc 705] Length = 267 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 37/131 (28%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +C++C DT +G+ Sbjct: 16 VESFGSVDGPG---------IRFVVFMQGC-----------RMRCQYCHNPDTWNIGV-- 53 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117 G DQ+ + ++G +GGE L+Q+D + L + G ++ Sbjct: 54 --GEEMTADQILADAQRYKAFWGEQGG-ITCSGGESLVQIDFILELFTKAKELGISTCLD 110 Query: 118 TNG---TIEPP 125 T+G T + P Sbjct: 111 TSGGPFTRDQP 121 >gi|15597185|ref|NP_250679.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas aeruginosa PAO1] gi|116049940|ref|YP_791250.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas aeruginosa UCBPP-PA14] gi|218892053|ref|YP_002440920.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas aeruginosa LESB58] gi|254235073|ref|ZP_04928396.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas aeruginosa C3719] gi|254240426|ref|ZP_04933748.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas aeruginosa 2192] gi|32363413|sp|Q9I2C0|PQQE_PSEAE RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|122259054|sp|Q02LD6|PQQE_PSEAB RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|226704996|sp|B7VAB6|PQQE_PSEA8 RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|9947990|gb|AAG05377.1|AE004625_7 pyrroloquinoline quinone biosynthesis protein E [Pseudomonas aeruginosa PAO1] gi|115585161|gb|ABJ11176.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas aeruginosa UCBPP-PA14] gi|126167004|gb|EAZ52515.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas aeruginosa C3719] gi|126193804|gb|EAZ57867.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas aeruginosa 2192] gi|218772279|emb|CAW28061.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas aeruginosa LESB58] Length = 381 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 15/112 (13%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C +G + + ++ + G + + + Sbjct: 15 PLWLLAELTYRCPLQCPYCSNPLEF--AREGAELSTAEWIEVFRQARELGAAQLGF---S 69 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134 GGEPLL Q LI+A GF + T+G G+D + +S Sbjct: 70 GGEPLLRQDLAELIEAGRGLGFYTNLITSGIGLDEARLARFAEAGLDHVQIS 121 >gi|325845712|ref|ZP_08168995.1| molybdenum cofactor biosynthesis protein A [Turicibacter sp. HGF1] gi|325488313|gb|EGC90739.1| molybdenum cofactor biosynthesis protein A [Turicibacter sp. HGF1] Length = 323 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 17/94 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C D + K + D++ ++ G K+ R LT Sbjct: 20 CNL-----------RCVYCMEDTIQEFLPKCSKLTDDEMIRIVTACARLGIKKIR---LT 65 Query: 92 GGEPLLQVDV-PLIQALNKR-GF-EIAVETNGTI 122 GGEPL++ + LI+ ++ G EI + TNGT+ Sbjct: 66 GGEPLVRPGIVELIKRIHDIDGIEEIYLTTNGTV 99 >gi|49088778|gb|AAT51605.1| PA1989 [synthetic construct] Length = 382 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 15/112 (13%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C +G + + ++ + G + + + Sbjct: 15 PLWLLAELTYRCPLQCPYCSNPLEF--AREGAELSTAEWIEVFRQARELGAAQLGF---S 69 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134 GGEPLL Q LI+A GF + T+G G+D + +S Sbjct: 70 GGEPLLRQDLAELIEAGRGLGFYTNLITSGIGLDEARLARFAEAGLDHVQIS 121 >gi|261404960|ref|YP_003241201.1| Radical SAM domain-containing protein [Paenibacillus sp. Y412MC10] gi|261281423|gb|ACX63394.1| Radical SAM domain protein [Paenibacillus sp. Y412MC10] Length = 291 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 20/92 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC K V+ A ++E + Sbjct: 15 CNL-----------ACTFC-----PPTERKANFIKVEDFARRLDEIKPHTSYIYLHVK-- 56 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 57 -GEPLLHPKIDELLDISHEKGFKVNITTNGTL 87 >gi|328952147|ref|YP_004369481.1| hopanoid biosynthesis associated radical SAM protein HpnH [Desulfobacca acetoxidans DSM 11109] gi|328452471|gb|AEB08300.1| hopanoid biosynthesis associated radical SAM protein HpnH [Desulfobacca acetoxidans DSM 11109] Length = 332 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 40/115 (34%), Gaps = 20/115 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL QGT + + +EE +T Sbjct: 38 CNLSCLGCGRIQE------------YQGTLNQMMTLQECLAAVEECG------APVVTVT 79 Query: 92 GGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 GGEPL+ V LIQ L R I + TNG + + + + SP+ + + G Sbjct: 80 GGEPLVYPPVVELIQELLHRRKHIYLCTNG-LLLGKVLPRLTPSPRLTLSVHLDG 133 >gi|331002131|ref|ZP_08325650.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae oral taxon 107 str. F0167] gi|330411225|gb|EGG90641.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae oral taxon 107 str. F0167] Length = 242 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 21/100 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF GC + +C+FC V ++ E+ Sbjct: 25 VFV--QGCPM-----------RCQFC----HNPDTWSTNENQVLTAQEVFEKAIRYRPYW 67 Query: 85 GRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 + ++GGEPLLQ+D L + + G ++T G Sbjct: 68 KDHGGITVSGGEPLLQIDFVTELFKICKENGVNTCLDTAG 107 >gi|199599261|ref|ZP_03212662.1| Pyruvate-formate lyase-activating enzyme [Lactobacillus rhamnosus HN001] gi|229552219|ref|ZP_04440944.1| [formate-C-acetyltransferase]-activating enzyme [Lactobacillus rhamnosus LMS2-1] gi|258508417|ref|YP_003171168.1| pyruvate formate-lyase activating enzyme [Lactobacillus rhamnosus GG] gi|199589873|gb|EDY97978.1| Pyruvate-formate lyase-activating enzyme [Lactobacillus rhamnosus HN001] gi|229314405|gb|EEN80378.1| [formate-C-acetyltransferase]-activating enzyme [Lactobacillus rhamnosus LMS2-1] gi|257148344|emb|CAR87317.1| Pyruvate formate-lyase activating enzyme [Lactobacillus rhamnosus GG] gi|259649731|dbj|BAI41893.1| formate acetyltransferase activating enzyme [Lactobacillus rhamnosus GG] Length = 283 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 37/131 (28%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +C++C DT +G+ Sbjct: 32 VESFGSVDGPG---------IRFVVFMQGC-----------RMRCQYCHNPDTWNIGV-- 69 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117 G DQ+ + ++G +GGE L+Q+D + L + G ++ Sbjct: 70 --GEEMTADQILADAQRYKAFWGEQGG-ITCSGGESLVQIDFILELFTKAKELGISTCLD 126 Query: 118 TNG---TIEPP 125 T+G T + P Sbjct: 127 TSGGPFTRDQP 137 >gi|149927643|ref|ZP_01915896.1| pyrroloquinoline quinone biosynthesis protein PqqE [Limnobacter sp. MED105] gi|149823697|gb|EDM82925.1| pyrroloquinoline quinone biosynthesis protein PqqE [Limnobacter sp. MED105] Length = 398 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 9/100 (9%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 LW E R C FC + + + + + + +++ G + + Sbjct: 14 PLWLLAELTYRCPLHCVFC---YNPVDYKSNTNELSTAEWKETMKQARALGAVQLGF--- 67 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGID 129 +GGEPLL+ D+ L+ ++ G+ + T+G P +D Sbjct: 68 SGGEPLLRDDLEELVAYGHELGYYTNLITSGIGLKPTRLD 107 >gi|84622616|ref|YP_449988.1| molybdenum cofactor biosynthesis protein A [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366556|dbj|BAE67714.1| molybdenum cofactor biosynthesis protein A [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 343 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 20/137 (14%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 +C +C D R + DQL L+ G + R LTGGEPLL+ D+P Sbjct: 36 RCGYCMPADRVPDDYGFDSRQRLSFDQLETLVRAFVSVGVTKVR---LTGGEPLLRRDLP 92 Query: 103 -LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVSPKAGCDLKIKGGQ----E 148 LI L G E +A+ TNGT+ Q + I VS A + E Sbjct: 93 SLIARLTAIEGIEDLALTTNGTLLARQAVALRQAGLRRITVSMDALEPALFRRMNGDRGE 152 Query: 149 LKLVFPQVNVSPENYIG 165 + V P + + + Sbjct: 153 IARVLPVIAAAEQAVFQ 169 >gi|189500137|ref|YP_001959607.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Chlorobium phaeobacteroides BS1] gi|189495578|gb|ACE04126.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Chlorobium phaeobacteroides BS1] Length = 255 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 35/124 (28%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI-----EEQWITGEKEG 85 GCN +C +C ++LA+ + E Sbjct: 49 GCNF-----------RCVYC---------HNPELVVSERLAETVPLVNEELFAWLSLNRA 88 Query: 86 RY--CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-------PQGIDWICVSP 135 V+TGGEP + +P I+ + ++ ++TNGT + +D++ + Sbjct: 89 LLDAVVITGGEPTMHAVLPEFIRRIKTLELDVKIDTNGTNPAMLEGLIDDELVDYVALDI 148 Query: 136 KAGC 139 KA Sbjct: 149 KAPL 152 >gi|71282516|ref|YP_270877.1| putative heme biosynthesis protein [Colwellia psychrerythraea 34H] gi|71148256|gb|AAZ28729.1| putative heme biosynthesis protein [Colwellia psychrerythraea 34H] Length = 410 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL D DF + +Q+ I++ + +L+ Sbjct: 40 CNLQCKHCYSTSL------DIDF-------KDELSTEQVKTTIDDLKVA---HVPVLILS 83 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ D+ + + ++GF +A+ TNGT+ Sbjct: 84 GGEPLLRPDIYEITEYAKQKGFYLALSTNGTL 115 >gi|319791401|ref|YP_004153041.1| coenzyme pqq biosynthesis protein e [Variovorax paradoxus EPS] gi|315593864|gb|ADU34930.1| coenzyme PQQ biosynthesis protein E [Variovorax paradoxus EPS] Length = 393 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 19/114 (16%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R C FC D+ D+ + E G + + Sbjct: 22 PLWLLAELTYRCPLHCAFCSNPVDYTRYDSE----LTTDEWIRVFREARAMGAVQLGF-- 75 Query: 90 LTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT-IEPP-------QGIDWICVS 134 +GGEPL++ D+ L+ A + GF + T+G + PP G+D I +S Sbjct: 76 -SGGEPLVRDDLAELVAAAHDLGFYTNLITSGVGLTPPRAEALKKAGLDHIQLS 128 >gi|262274659|ref|ZP_06052470.1| pyruvate formate-lyase activating enzyme [Grimontia hollisae CIP 101886] gi|262221222|gb|EEY72536.1| pyruvate formate-lyase activating enzyme [Grimontia hollisae CIP 101886] Length = 246 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 53/162 (32%), Gaps = 37/162 (22%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G V+++ + Sbjct: 21 IRFIVFMQGC-----------LMRCKYCHNRDT----WDLHDGREVTVEEIMKEVVTYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWIC 132 G +GGE +LQ + +A G ++TNG T + +D Sbjct: 66 FINASGGGVTASGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYIRKHTDVIDEVLD--- 122 Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174 DL + ++L + V N+ DF R+ Q Sbjct: 123 -----ATDLVMLDLKQLNDDIHKDLVGVSNHRTLDFARYLHQ 159 >gi|153811927|ref|ZP_01964595.1| hypothetical protein RUMOBE_02320 [Ruminococcus obeum ATCC 29174] gi|149832061|gb|EDM87146.1| hypothetical protein RUMOBE_02320 [Ruminococcus obeum ATCC 29174] Length = 245 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 26/117 (22%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64 E F ++ G G R +F SGC + +C+FC DT + +G + Sbjct: 13 ESFGSVDGPGV---RYVIF--LSGC-----------AMRCQFCHNPDT----WKMGEGQQ 52 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 Y QL +G ++GGEPLLQ+D L + G ++T+ Sbjct: 53 YTPSQLLKQALRYKNYWGNKGG-ITVSGGEPLLQIDFLTELFRQAKAAGVHTTLDTS 108 >gi|307353972|ref|YP_003895023.1| Radical SAM domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307157205|gb|ADN36585.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571] Length = 362 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 7/92 (7%) Query: 38 REQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 R D +A+C C F +G ++ D + + LTGGEP L Sbjct: 32 RITDICNARCVHC---FTSADN-QGETMTLEDFQDFV--VPRLKQCRVSRVTLTGGEPFL 85 Query: 98 QVD-VPLIQALNKRGFEIAVETNGTIEPPQGI 128 + + ++ L+ + + TN T+ I Sbjct: 86 HPNIIDFVKLLSNADISVGICTNATVITTDQI 117 >gi|261838000|gb|ACX97766.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori 51] Length = 319 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 57/170 (33%), Gaps = 27/170 (15%) Query: 47 CRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPL 103 C++C T +D + + ++ G K+ R +TGGEPLL+ Sbjct: 25 CQYCMPTTPLNFFDDE--ELLPLDNVLEFLKIAIDEGIKKIR---ITGGEPLLRKGLDEF 79 Query: 104 IQALNKRGFEIA--VETNGTIEPPQGID-------WICVS-PKAGCDLKIKGGQELKLVF 153 I L+ E+A + TNG + D + VS LKI LK Sbjct: 80 IAKLHAYNKEVALVLSTNGFLLKKMAKDLKNAGLSQVNVSLDSLKRVLKISQKDALKNTL 139 Query: 154 PQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQ 203 + S + + M +E L + Y S+Q Sbjct: 140 EGIEESLKAGLKLKLNTVV---MKSVNDDEILEL-LEYAKNR-----SIQ 180 >gi|154495914|ref|ZP_02034610.1| hypothetical protein BACCAP_00194 [Bacteroides capillosus ATCC 29799] gi|150274797|gb|EDN01853.1| hypothetical protein BACCAP_00194 [Bacteroides capillosus ATCC 29799] Length = 376 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 13/92 (14%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN +A+ I + DQ D+ + G + +LT Sbjct: 41 CNFNCKMCYVHQTAE---------QIAASGRKELTADQWLDIARQAKDAGMV---FLLLT 88 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GGEPL + P L+ L + G ++V +NG++ Sbjct: 89 GGEPLTFPEFPRLLHELKQLGLLVSVNSNGSL 120 >gi|116696219|ref|YP_841795.1| heme d1 biosynthesis protein (NirJ) [Ralstonia eutropha H16] gi|113530718|emb|CAJ97065.1| heme d1 biosynthesis protein (NirJ) [Ralstonia eutropha H16] Length = 387 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 24/116 (20%) Query: 33 NLWSGREQDRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 + R + CR C DTDF G T +DQL D Sbjct: 26 PVVIWNLIRRCNLNCRHCYATSADTDFKGELDTAEALRVLDQLRDA----------RVPA 75 Query: 88 CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI--------EPPQGIDWICVS 134 +L+GGEPLL+ D+ + GF +++ +NGT+ G D++ VS Sbjct: 76 LILSGGEPLLRPDLYEIAARARALGFHLSLSSNGTLLDAGHAARLAAAGFDYVGVS 131 >gi|85858425|ref|YP_460627.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB] gi|85721516|gb|ABC76459.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB] Length = 369 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR +G G + ++ +L+EE +LT Sbjct: 21 CNLSC--------IHCR-----ASAEKGPYAGELSTEESKNLLEE---IAAFSRPVVILT 64 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ D+ L + G + + TNGT+ Sbjct: 65 GGEPLLREDIYELAAYGDGLGLRMVLATNGTL 96 >gi|107101417|ref|ZP_01365335.1| hypothetical protein PaerPA_01002457 [Pseudomonas aeruginosa PACS2] gi|313111199|ref|ZP_07797021.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas aeruginosa 39016] gi|310883523|gb|EFQ42117.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas aeruginosa 39016] Length = 370 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 15/112 (13%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C +G + + ++ + G + + + Sbjct: 4 PLWLLAELTYRCPLQCPYCSNPLEF--AREGAELSTAEWIEVFRQARELGAAQLGF---S 58 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134 GGEPLL Q LI+A GF + T+G G+D + +S Sbjct: 59 GGEPLLRQDLAELIEAGRGLGFYTNLITSGIGLDEARLARFAEAGLDHVQIS 110 >gi|33595784|ref|NP_883427.1| molybdenum cofactor biosynthesis protein A [Bordetella parapertussis 12822] gi|33565863|emb|CAE36410.1| molybdenum cofactor biosynthesis protein [Bordetella parapertussis] Length = 365 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 25/114 (21%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D+ + + + + +++A L + G ++ R LTGGE Sbjct: 46 DRCNFRCTYCMPREVFDSSYAFMPHS--ALLSFEEIARLAAQFARLGVEKIR---LTGGE 100 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEPP-------QGIDWICVS 134 PLL+ ++ L+ L + R ++ + TNG++ G+ + VS Sbjct: 101 PLLRKNIETLVGMLAELRTPAGRPLDLTLTTNGSLLARKAAALKQAGLSRVTVS 154 >gi|33600311|ref|NP_887871.1| molybdenum cofactor biosynthesis protein A [Bordetella bronchiseptica RB50] gi|33567910|emb|CAE31823.1| molybdenum cofactor biosynthesis protein [Bordetella bronchiseptica RB50] Length = 365 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 25/114 (21%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D+ + + + + +++A L + G ++ R LTGGE Sbjct: 46 DRCNFRCTYCMPREVFDSSYAFMPHS--ALLSFEEIARLAAQFARLGVEKIR---LTGGE 100 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEPP-------QGIDWICVS 134 PLL+ ++ L+ L + R ++ + TNG++ G+ + VS Sbjct: 101 PLLRKNIETLVGMLAELRTPAGRPLDLTLTTNGSLLARKAAALKQAGLSRVTVS 154 >gi|294634565|ref|ZP_06713100.1| putative pyruvate formate-lyase 3-activating enzyme [Edwardsiella tarda ATCC 23685] gi|291092079|gb|EFE24640.1| putative pyruvate formate-lyase 3-activating enzyme [Edwardsiella tarda ATCC 23685] Length = 323 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118 G + + + IE ++ G L+GGEP +Q + L++ + G AVET Sbjct: 125 GEEISAETILSQIERDRPFYQRSGGGITLSGGEPFMQPRLAETLLRRCYQAGIHTAVET 183 >gi|325522592|gb|EGD01129.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. TJI49] Length = 263 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 24/117 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN G R S D+ + + R + QL + G ++ R +T Sbjct: 52 CNFRCGYCMPRASFGA-----DYAFMPSS--ERLSFAQLEKIARAFTSLGVEKFR---IT 101 Query: 92 GGEPLLQVDVP-LIQALN------KRGFEIAVETNGTIEP-------PQGIDWICVS 134 GGEPLL+ + LI+ L R EIA+ TNG++ G+ + VS Sbjct: 102 GGEPLLRRHLERLIERLATLTTVDGRPVEIALTTNGSLLADKARTLRDAGLSRVTVS 158 >gi|315604652|ref|ZP_07879715.1| pyruvate formate-lyase activating enzyme [Actinomyces sp. oral taxon 180 str. F0310] gi|315313664|gb|EFU61718.1| pyruvate formate-lyase activating enzyme [Actinomyces sp. oral taxon 180 str. F0310] Length = 292 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 28/135 (20%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF +GC L +C +C DT F+ G + +L I Sbjct: 68 RMTVF--LNGCPL-----------RCLYCHNPDT-FLMKDGAP---VSDTELLSRIARYR 110 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTI------EPPQGIDW 130 L+GGE L+Q +I + G ++T+G + E ID Sbjct: 111 RIFRTTKGGITLSGGEVLMQPHFAKRIILGAKEMGVHTCIDTSGYLGANCDDEMLDAIDL 170 Query: 131 ICVSPKAGCDLKIKG 145 + + K+G + K Sbjct: 171 VLLDVKSGNEETYKR 185 >gi|296389601|ref|ZP_06879076.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas aeruginosa PAb1] Length = 370 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 15/112 (13%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C +G + + ++ + G + + + Sbjct: 4 PLWLLAELTYRCPLQCPYCSNPLEF--AREGAELSTAEWIEVFRQARELGAAQLGF---S 58 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134 GGEPLL Q LI+A GF + T+G G+D + +S Sbjct: 59 GGEPLLRQDLAELIEAGRGLGFYTNLITSGIGLDEARLARFAEAGLDHVQIS 110 >gi|218283332|ref|ZP_03489380.1| hypothetical protein EUBIFOR_01969 [Eubacterium biforme DSM 3989] gi|218215924|gb|EEC89462.1| hypothetical protein EUBIFOR_01969 [Eubacterium biforme DSM 3989] Length = 313 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 8/78 (10%) Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVD--V 101 A C C T + + Y V++ + ++++++ + G +GGEP LQ D + Sbjct: 99 AICDVCPTLALSMDA---KEYTVEKCVHEILKDEIFFKREGG--VTFSGGEPFLQSDFLM 153 Query: 102 PLIQALNKRGFEIAVETN 119 L++A ++G A+ET+ Sbjct: 154 DLLKACKEKGIHTAIETS 171 >gi|300698169|ref|YP_003748830.1| ribonucleotide reductase activating transmembrane protein (nrdG) [Ralstonia solanacearum CFBP2957] gi|299074893|emb|CBJ54462.1| putative ribonucleotide reductase activating transmembrane protein (nrdG) [Ralstonia solanacearum CFBP2957] Length = 244 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 28/128 (21%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G++A VF +GC +C +C + + Q+ ++ + Sbjct: 42 GQLAAVVFI--AGCP-----------WRCHYC---HNPHLQARERHLHWTQVMAFLQSRR 85 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 + V +GGEPL + +P LI A+ GF+ + T G +DW+ Sbjct: 86 TLLDA----VVFSGGEPLSEPRLPELIAAVRALGFKAGLHTAGIYPARLAAVLPMLDWVG 141 Query: 133 VSPKAGCD 140 + K Sbjct: 142 LDIKTTAS 149 >gi|282165058|ref|YP_003357443.1| hypothetical protein MCP_2388 [Methanocella paludicola SANAE] gi|282157372|dbj|BAI62460.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 398 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 18/99 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C + + LI+ + + Y ++T Sbjct: 69 CNL-----------RCLHC---VTSSGSKDNDELDSQEAFALIDRL---ADMKVFYLIIT 111 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGID 129 GGEP L+ D + L++ ++ + + V+TNGT+ +D Sbjct: 112 GGEPFLRPDILELLRHISTKNMMVKVDTNGTLIDDDAVD 150 >gi|28210648|ref|NP_781592.1| benzylsuccinate synthase activating enzyme [Clostridium tetani E88] gi|28203086|gb|AAO35529.1| pyruvate formate-lyase [Clostridium tetani E88] Length = 310 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 G V+++ +++ I L+GGEPL+Q++ + L++A G+ A+ET Sbjct: 110 GEEMTVEEVVKELKKDAIHFRNSNGGITLSGGEPLMQLEFTLELLKACKTMGWHTAMET 168 >gi|320354841|ref|YP_004196180.1| Radical SAM domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320123343|gb|ADW18889.1| Radical SAM domain protein [Desulfobulbus propionicus DSM 2032] Length = 293 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 20/92 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC G V A+++ + + Sbjct: 15 CNL-----------ACPFC-----ARSDRAKGTMAVTAFAEVLHRLAGATRYLYLHVL-- 56 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL L+ ++GF + + TNGT+ Sbjct: 57 -GEPLLHPHFDRLLALCQEQGFRVNLTTNGTL 87 >gi|294794866|ref|ZP_06760001.1| pyruvate formate-lyase 1-activating enzyme [Veillonella sp. 3_1_44] gi|294454228|gb|EFG22602.1| pyruvate formate-lyase 1-activating enzyme [Veillonella sp. 3_1_44] Length = 258 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 28/114 (24%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEK 83 VF GC + +C +C + + + V +L D E Sbjct: 23 VF--LQGCPM-----------RCAYCHNPDTWDETSDNAKFMTVKELWDQYERNRQFYTN 69 Query: 84 EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP 135 G +TGGE L+Q+D + L +R ++T+G IC P Sbjct: 70 GG--ITVTGGEALMQIDFVIELFTYFRERNVHTCLDTSG----------ICFDP 111 >gi|119897481|ref|YP_932694.1| pyrroloquinoline quinone biosynthesis protein PqqE [Azoarcus sp. BH72] gi|119669894|emb|CAL93807.1| pyrroloquinoline quinone synthesis protein E [Azoarcus sp. BH72] Length = 384 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R C FC DF + + ++ E G + C Sbjct: 16 PLWLLAEVTYRCPLHCAFCYNPVDFARDDTE----LSTEDWLRVLREARAAGSVQ---CG 68 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL++ D+ L+ ++ G+ + T+G Sbjct: 69 FSGGEPLMRDDLEVLVAEAHRLGYYTNLLTSG 100 >gi|164688694|ref|ZP_02212722.1| hypothetical protein CLOBAR_02340 [Clostridium bartlettii DSM 16795] gi|164602170|gb|EDQ95635.1| hypothetical protein CLOBAR_02340 [Clostridium bartlettii DSM 16795] Length = 380 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 5/87 (5%) Query: 47 CRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104 C+ C + K GR V++ + EE G + ++TGGEPLL L Sbjct: 39 CKMCYVKMTKSEVDKVGRLRTVEEWISIAEEAKDAGM---LFLLITGGEPLLYKGFKELY 95 Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWI 131 L K G I++ TN T+ + D+ Sbjct: 96 LKLVKMGLIISINTNATLIDEEMADFF 122 >gi|317014178|gb|ADU81614.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori Gambia94/24] Length = 321 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 26/166 (15%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLLQV-DV 101 +C++C + T ++ ++L + +E I ++ + +TGGEPLL+ Sbjct: 24 RCQYC------MPTTPLDFFDDEELLPLDNALEFLKIAIDEGVKKIRITGGEPLLRKGLD 77 Query: 102 PLIQALNKRGFEIA--VETNGTI-------EPPQGIDWICV---SPKAGCDLKIKGGQEL 149 I L+ E+A + TNG + G+ + V S K+ LKI L Sbjct: 78 EFIAKLHAYNKEVALVLSTNGFLLKKMAKGLKDAGLSRVNVSLDSLKSDRVLKISQKDAL 137 Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 K + S + + M G +E L + Y Sbjct: 138 KNALEGIEESLKVGLKLKLNTVV---MKGVNDDEILEL-LEYAKNR 179 >gi|291534464|emb|CBL07576.1| molybdenum cofactor biosynthesis protein A, bacterial [Roseburia intestinalis M50/1] Length = 345 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 23/164 (14%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR + +C++C D + ++ +++ + E G R+ LTGGEPL+ Sbjct: 18 DRCNLRCKYCMPGDIETTDME----NLLTYEEIVQVTEAAAALG---IRHIRLTGGEPLV 70 Query: 98 QVD-VPLIQALNK-RGFE-IAVETNGTIEP-------PQGIDWICVSPKAGCDL---KIK 144 + V L++ + G E + + TNG + +D + VS + ++ Sbjct: 71 RRGCVDLVEKIKNVSGIETVGMTTNGVLLAEYAKALKEAELDSVNVSLDTLDETEFQRLT 130 Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 G EL V +N + E I Q +D + + TN Sbjct: 131 GRDELNAVLAGINAAKEAQIPVKINTVHYQHLDWKSILDYTNRV 174 >gi|269797319|ref|YP_003311219.1| pyruvate formate-lyase activating enzyme [Veillonella parvula DSM 2008] gi|282849279|ref|ZP_06258664.1| pyruvate formate-lyase 1-activating enzyme [Veillonella parvula ATCC 17745] gi|269093948|gb|ACZ23939.1| pyruvate formate-lyase activating enzyme [Veillonella parvula DSM 2008] gi|282580983|gb|EFB86381.1| pyruvate formate-lyase 1-activating enzyme [Veillonella parvula ATCC 17745] Length = 258 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 28/114 (24%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEK 83 VF GC + +C +C + + + V +L D E Sbjct: 23 VF--LQGCPM-----------RCAYCHNPDTWDETSDNAKFMTVKELWDQYERNRQFYTN 69 Query: 84 EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP 135 G +TGGE L+Q+D + L +R ++T+G IC P Sbjct: 70 GG--ITVTGGEALMQIDFVIELFTYFRERNVHTCLDTSG----------ICFDP 111 >gi|6580770|gb|AAF18276.1| pyruvate formate lyase activating enzyme [Zymomonas mobilis subsp. mobilis ZM4] Length = 270 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 22/129 (17%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 RF C + G L C++C LA+++EE + R Sbjct: 48 VRF--CAVLGG-----LRFACQYC----HNPDSWFLKNGRAVTLAEMMEEVASYADFLKR 96 Query: 87 Y---CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI------EPPQGIDWICVSP 135 ++GGEPL+Q + L++A G A++T G + D + + Sbjct: 97 AGGGITISGGEPLVQPEFTGALLKAAKYLGLHTAIDTAGFLGAQADDALLSNTDLVLLDI 156 Query: 136 KAGCDLKIK 144 KA D + K Sbjct: 157 KAFNDKRYK 165 >gi|323701817|ref|ZP_08113487.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574] gi|323533121|gb|EGB22990.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574] Length = 389 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 18/96 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR C + K + ++ I++ E + + + Sbjct: 47 CNL-----------KCRHC---YSESDSKKYNELSTEEAKRFIDDL---AEFKVPVLLFS 89 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 GGEPL++ D L+ ++G + TNGT+ PQ Sbjct: 90 GGEPLVRPDFFELVAYAGEKGIRTTISTNGTLITPQ 125 >gi|319935709|ref|ZP_08010140.1| glycyl-radical enzyme activating protein [Coprobacillus sp. 29_1] gi|319809367|gb|EFW05802.1| glycyl-radical enzyme activating protein [Coprobacillus sp. 29_1] Length = 312 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 6/74 (8%) Query: 48 RFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQ 105 ++C T + Y++++L I++ + +EG +GGEP +Q D + +++ Sbjct: 101 KYCPTGAIRYDS---ELYDIEELMIKIKQDEVFFREEGG-VTFSGGEPFMQGDFLIEILK 156 Query: 106 ALNKRGFEIAVETN 119 ++ G A+ET+ Sbjct: 157 RCHEEGIHTAIETS 170 >gi|320103820|ref|YP_004179411.1| hopanoid biosynthesis associated radical SAM protein HpnH [Isosphaera pallida ATCC 43644] gi|319751102|gb|ADV62862.1| hopanoid biosynthesis associated radical SAM protein HpnH [Isosphaera pallida ATCC 43644] Length = 337 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 21/141 (14%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL T + ++D+ ++E + Sbjct: 42 CNLTCTGCGRIRE------------YASTIKEKLSIDECLAAVDECG------APVVSIC 83 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE-L 149 GGEP++ + L + +RG + + TNG + + ID SP+ ++ + G +E Sbjct: 84 GGEPMIYPGIDQLTAKILERGKCVYLCTNG-MFIRKHIDKFKPSPRFFFNVHLDGMRESH 142 Query: 150 KLVFPQVNVSPENYIGFDFER 170 L + V + G + Sbjct: 143 DLAVERQGVFDKAIDGIKAAK 163 >gi|294793098|ref|ZP_06758244.1| pyruvate formate-lyase 1-activating enzyme [Veillonella sp. 6_1_27] gi|294456043|gb|EFG24407.1| pyruvate formate-lyase 1-activating enzyme [Veillonella sp. 6_1_27] Length = 258 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 28/114 (24%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEK 83 VF GC + +C +C + + + V +L D E Sbjct: 23 VF--LQGCPM-----------RCAYCHNPDTWDETSDNAKFMTVKELWDQYERNRQFYTN 69 Query: 84 EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP 135 G +TGGE L+Q+D + L +R ++T+G IC P Sbjct: 70 GG--ITVTGGEALMQIDFVIELFTYFRERNVHTCLDTSG----------ICFDP 111 >gi|328951851|ref|YP_004369185.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109] gi|328452175|gb|AEB08004.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109] Length = 337 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 19/98 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C F D+ G G +D++ ++ E G + + T Sbjct: 16 CNLNC--------LHC-FADS------GVAGYEMTMDEIRKVLRELRELGVFQ---VLFT 57 Query: 92 GGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEPPQGI 128 GGEP +++ F + +ETNGT+ + I Sbjct: 58 GGEPFCRNDFFEVMEDAEAMDFAMVIETNGTLLDEERI 95 >gi|300817404|ref|ZP_07097621.1| radical SAM domain protein [Escherichia coli MS 107-1] gi|300530030|gb|EFK51092.1| radical SAM domain protein [Escherichia coli MS 107-1] Length = 372 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 14/98 (14%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A + D + T ++++ + I E + E VL Sbjct: 13 CNLDCTYCYVYRGADTSWQDQPYRMNDAT------IEKVVERITEYSLLQETGFA-IVLH 65 Query: 92 GGEPLL---QVDVPLIQALNK----RGFEIAVETNGTI 122 GGEPLL + L+ L + + + I+++TNG + Sbjct: 66 GGEPLLLGERRLESLLSGLRRVLNPQKYPISIQTNGVL 103 >gi|157146525|ref|YP_001453844.1| hypothetical protein CKO_02286 [Citrobacter koseri ATCC BAA-895] gi|157083730|gb|ABV13408.1| hypothetical protein CKO_02286 [Citrobacter koseri ATCC BAA-895] Length = 299 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G V+++ D + ++ G L+GGEP +Q ++ L +A + G AVET Sbjct: 101 GETKRVEEIMDTVLRDKPFYDRSGGGITLSGGEPFMQPELAAALFKASHDAGIHTAVET 159 >gi|28378196|ref|NP_785088.1| molybdenum cofactor biosynthesis protein A [Lactobacillus plantarum WCFS1] gi|38258047|sp|Q88WY1|MOAA_LACPL RecName: Full=Molybdenum cofactor biosynthesis protein A gi|28271031|emb|CAD63936.1| molybdopterin precursor synthase MoaA [Lactobacillus plantarum WCFS1] Length = 332 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 36/164 (21%) Query: 27 CRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGE 82 R S CNL +C +C G+ R + D++ LIE G Sbjct: 15 VRLSITDRCNL-----------RCVYC-MPKEGLPFFPTDRVLSQDEIVQLIENFAAMGV 62 Query: 83 KEGRYCVLTGGEPLLQVD-VPLIQALNK-RGF-EIAVETNGTIEP-------PQGIDWIC 132 + R +TGGEPLL+ D V +++ + G ++++ TNG G+D + Sbjct: 63 SKVR---ITGGEPLLRTDVVEIVRRIKAVDGINDVSITTNGLFLAKLAKPLKEAGLDRLN 119 Query: 133 VS---PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173 +S KA KI G ++ V + V+ F++ L Sbjct: 120 ISLDTFKADRYKKITRGGNIQQVLDGIAVA----SKLHFKKIKL 159 >gi|299537483|ref|ZP_07050777.1| molybdenum cofactor biosynthesis protein A [Lysinibacillus fusiformis ZC1] gi|298727044|gb|EFI67625.1| molybdenum cofactor biosynthesis protein A [Lysinibacillus fusiformis ZC1] Length = 338 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 18/93 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D + + K + D++ L++ G K+ R +TG Sbjct: 21 DRCNFRCRYCMPAEVFGPD--YAFLPSDK--ILSFDEIERLVKIFVSLGVKKIR---ITG 73 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTI 122 GEPLL+ D+P LI +++ +G E IA+ TNG++ Sbjct: 74 GEPLLRRDLPELIARIHRIKGVEDIALTTNGSL 106 >gi|71907332|ref|YP_284919.1| pyrroloquinoline quinone biosynthesis protein PqqE [Dechloromonas aromatica RCB] gi|71846953|gb|AAZ46449.1| Coenzyme PQQ biosynthesis protein E [Dechloromonas aromatica RCB] Length = 375 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 9/91 (9%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 LW E R C FC + + G ++ +I + G + + Sbjct: 9 PLWLLAEVTYRCPLHCAFC---YNPVDFAAAGPELTTEEWLRVIRQARALGAAQFG---I 62 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEP+L+ D+ L+ + GF + T+G Sbjct: 63 SGGEPMLRDDIEILVAEARQLGFYTNLITSG 93 >gi|293401093|ref|ZP_06645237.1| pyruvate formate-lyase 1-activating enzyme [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305219|gb|EFE46464.1| pyruvate formate-lyase 1-activating enzyme [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 256 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 27/118 (22%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64 E F ++ G G R +F GC +C+FC DT + Sbjct: 17 ETFGSVDGPGV---RYVIF--LQGC-----------RMRCQFCHNADTWKIMEGSE---- 56 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 + + K ++GGEPLLQ+D + L + ++G ++T G Sbjct: 57 -TAEDVLRKALRYKPY-WKHSGGITVSGGEPLLQIDFLLELFKLAKQKGVHTVIDTCG 112 >gi|330829141|ref|YP_004392093.1| pyruvate formate-lyase activating enzyme [Aeromonas veronii B565] gi|328804277|gb|AEB49476.1| Pyruvate formate-lyase activating enzyme [Aeromonas veronii B565] Length = 216 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 9/80 (11%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--D 100 +C++C DT G V +L I G +GGE +LQ Sbjct: 2 RCKYCHNRDT----WDTEGGREVTVPELMSDITSYRHFMNASGGGVTASGGEAMLQPAFI 57 Query: 101 VPLIQALNKRGFEIAVETNG 120 L A ++G ++TNG Sbjct: 58 TELFTACKEKGIHTCLDTNG 77 >gi|304406179|ref|ZP_07387836.1| Radical SAM domain protein [Paenibacillus curdlanolyticus YK9] gi|304344763|gb|EFM10600.1| Radical SAM domain protein [Paenibacillus curdlanolyticus YK9] Length = 292 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 29/118 (24%) Query: 32 CNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C FC T+ G +D ++++ + Sbjct: 15 CNL-----------ACTFCPQTERA------KGFIKLDTFNHVLDQIKPHTNHIYLHVK- 56 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147 GEPLL + L+ A + +GF++ + TNGT+ PK ++ Sbjct: 57 --GEPLLHPRIDELLDAAHDKGFKVNITTNGTLIAKNK-------PKLLGKPALRQMN 105 >gi|291085989|ref|ZP_06354577.2| putative radical SAM [Citrobacter youngae ATCC 29220] gi|291069086|gb|EFE07195.1| putative radical SAM [Citrobacter youngae ATCC 29220] Length = 350 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 25/100 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL------IEEQWITGEKEG 85 CNL +C+ C G KG R ++ +L ++ +Q Sbjct: 20 CNL-----------RCQHC-----YQPGYKGKRNSLAELKEIAGQLLHFHQQLAGSSPLP 63 Query: 86 RYCVLTGGEPLLQVD-VPLIQALNKRGFE--IAVETNGTI 122 LTGGEP + + L+ L++ IA+ TNGT+ Sbjct: 64 FLLTLTGGEPFAHPEFIKLLHFLHEHPQRPNIAILTNGTL 103 >gi|254556403|ref|YP_003062820.1| molybdenum cofactor biosynthesis protein A [Lactobacillus plantarum JDM1] gi|254045330|gb|ACT62123.1| molybdenum cofactor biosynthesis protein A [Lactobacillus plantarum JDM1] Length = 332 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 36/164 (21%) Query: 27 CRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGE 82 R S CNL +C +C G+ R + D++ LIE G Sbjct: 15 VRLSITDRCNL-----------RCVYC-MPKEGLPFFPTDRVLSQDEIVQLIENFAAMGV 62 Query: 83 KEGRYCVLTGGEPLLQVD-VPLIQALNK-RGF-EIAVETNGTIEP-------PQGIDWIC 132 + R +TGGEPLL+ D V +++ + G ++++ TNG G+D + Sbjct: 63 SKVR---ITGGEPLLRTDVVEIVRRIKAVDGINDVSITTNGLFLAKLAKPLKEAGLDRLN 119 Query: 133 VS---PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173 +S KA KI G ++ V + V+ F++ L Sbjct: 120 ISLDTFKADRYKKITRGGNIQQVLDGIAVA----SKLHFKKIKL 159 >gi|153873319|ref|ZP_02001940.1| radical SAM family protein [Beggiatoa sp. PS] gi|152070216|gb|EDN68061.1| radical SAM family protein [Beggiatoa sp. PS] Length = 453 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 14/103 (13%) Query: 31 GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G D C C T + T G + ++ + + + + Sbjct: 80 GCPYDCGLCPDHEQHSCVTLVEVTEQCNLTCPTCYANSSPTNGRHRTLAEI-ERMFDIVV 138 Query: 80 TGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG--FEIAVETNG 120 E + ++GGEP + D I L K+ I V TNG Sbjct: 139 ANEGQPDVVQISGGEPTIHPDFFQILDLAKQKPIRHIMVNTNG 181 >gi|315634844|ref|ZP_07890126.1| pyruvate formate-lyase activating enzyme [Aggregatibacter segnis ATCC 33393] gi|315476396|gb|EFU67146.1| pyruvate formate-lyase activating enzyme [Aggregatibacter segnis ATCC 33393] Length = 246 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 58/180 (32%), Gaps = 45/180 (25%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G V++L + Sbjct: 21 IRFILFLQGC-----------LMRCKYCHNRDT----WDLHGGKEVTVEELMKEVVSYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 G +GGE +LQ + QA K G ++TNG + + ID Sbjct: 66 FMNASGGGVTASGGEAILQAEFVRDWFQACKKEGISTCLDTNGFVRHYDHVIDELID--- 122 Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC 192 DL + +EL Q + N +F + LQ + N + I Y Sbjct: 123 -----ATDLVLLDLKELNDQVHQNLIGVSNKRTLEFAK-YLQ-------KRNQPVWIRYV 169 >gi|270283860|ref|ZP_05965112.2| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium gallicum DSM 20093] gi|270277580|gb|EFA23434.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium gallicum DSM 20093] Length = 280 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 51/140 (36%), Gaps = 40/140 (28%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G +D + IE Sbjct: 58 RMTVF--LSGCPL-----------RCQYCQNPDT----WKMRDGKPVTLDAMIKKIERYK 100 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQ----ALNKRGFEIAVETNG------TIEPPQGI 128 + +GGE ++Q + A + G ++T+G T E I Sbjct: 101 DLFKATNGGITFSGGESMMQP--AFVSRSFRAAKEMGVHTCLDTSGFLGANYTDEMIDDI 158 Query: 129 DWICVSPKAGCDLKIKGGQE 148 D +C+ L +K G E Sbjct: 159 D-LCL-------LDVKSGDE 170 >gi|120434818|ref|YP_860504.1| molybdopterin biosynthesis MoaA protein [Gramella forsetii KT0803] gi|117576968|emb|CAL65437.1| molybdopterin biosynthesis MoaA protein [Gramella forsetii KT0803] Length = 330 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 6/82 (7%) Query: 41 DRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C + +G + ++ + ++IE + LTGGEPL++ Sbjct: 25 DRCNLRCFYC----MPEEGIELMEKSSIMTIEEIIELATKFRDLGVDTIRLTGGEPLVRK 80 Query: 100 DV-PLIQALNKRGFEIAVETNG 120 + L++ L K G + + TNG Sbjct: 81 NFGYLVEELAKLGVTLKITTNG 102 >gi|317407424|gb|EFV87386.1| ribonucleotide reductase activating protein [Achromobacter xylosoxidans C54] Length = 254 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 28/127 (22%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G +A +F +GC +C +C T+ RY+ + ++ + Sbjct: 52 GTLAAVIFI--AGCP-----------WRCHYC---HNPELQTRNARYDWRDVRAFLDNRQ 95 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQG-----IDWIC 132 + V +GGEPL + +P +I+ + G+ I + T G +DW+ Sbjct: 96 GLLDA----VVFSGGEPLSEPRLPSMIREARRMGYRIGLHTAGIYPLRLADVLRYLDWVG 151 Query: 133 VSPKAGC 139 + KA Sbjct: 152 LDIKADA 158 >gi|254446971|ref|ZP_05060438.1| molybdenum cofactor biosynthesis protein A [gamma proteobacterium HTCC5015] gi|198263110|gb|EDY87388.1| molybdenum cofactor biosynthesis protein A [gamma proteobacterium HTCC5015] Length = 329 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 14/103 (13%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 GR + R S DR +CR+C + +VD+ L+ Sbjct: 9 GRKVTYVRLS--------VTDRCDLRCRYCMPEGFSDYHVPDHWLSVDEWLHLVGALARG 60 Query: 81 GEKEGRYCVLTGGEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 G ++ R +TGGEPLL+ ++P LI+ +++ G E IA+ TNG Sbjct: 61 GVQKVR---ITGGEPLLRRELPELIEGISQIEGIEDIALSTNG 100 >gi|37523340|ref|NP_926717.1| hypothetical protein gll3771 [Gloeobacter violaceus PCC 7421] gi|35214344|dbj|BAC91712.1| gll3771 [Gloeobacter violaceus PCC 7421] Length = 334 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 19/111 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN + + + A+C FCD T + + + + G +Y T Sbjct: 6 CNYYVTYKCN---ARCHFCD----IWALTPPPESSYQTICANLRDLKRLG---VKYVDFT 55 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVS 134 GGEPLL+ D+ L + G + TN TI P+ +D++ S Sbjct: 56 GGEPLLRPDIVELYAEAKRLGLMTTLTTN-TILYPKKAEALRGLVDFLNFS 105 >gi|242277771|ref|YP_002989900.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638] gi|242120665|gb|ACS78361.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638] Length = 449 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 15/103 (14%) Query: 31 GCNLWSGREQDRLSAQCR------F-CDTD----FVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G D C + CD F + +L +L+++ Sbjct: 77 GCPFDCGLCPDHNQHTCTTLVEITWRCDLKCKVCFASAGQKVPADPTILELDNLLQKVRA 136 Query: 80 TGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGFE-IAVETNG 120 T L+GGEP ++ D+P I L K GF + V TNG Sbjct: 137 TAGPCNLQ--LSGGEPAVRDDLPRIAELAKKHGFPFVQVNTNG 177 >gi|291547922|emb|CBL21030.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Ruminococcus sp. SR1/5] Length = 231 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 17/97 (17%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 GCNL +CD+ G+ + + I+ + + + Sbjct: 105 QGCNLACSYCFGDEG---SYCDS----------GKMSKETAFKAIDYLFEHSDADKVLIT 151 Query: 90 LTGGEPLLQVDV--PLIQALNKRGFEI--AVETNGTI 122 GGEPLL VD+ +I + + ++ TNGT+ Sbjct: 152 FFGGEPLLAVDLMKEIISYCKTKDKNVGYSMTTNGTL 188 >gi|254250659|ref|ZP_04943978.1| Molybdenum cofactor biosynthesis enzyme [Burkholderia cenocepacia PC184] gi|124879793|gb|EAY67149.1| Molybdenum cofactor biosynthesis enzyme [Burkholderia cenocepacia PC184] Length = 393 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 24/117 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN G R S D+ + + R + QL + G ++ R +T Sbjct: 71 CNFRCGYCMPRESFGA-----DYAFMPSS--ERLSFAQLEKIARAFTSLGVEKIR---IT 120 Query: 92 GGEPLLQVDVP-LIQALN------KRGFEIAVETNGTIEP-------PQGIDWICVS 134 GGEPLL+ ++ LI+ L + EIA+ TNG++ G+ + VS Sbjct: 121 GGEPLLRRNLEALIERLATLTTVDGKPVEIALTTNGSLLAAKARALRDAGLSRVTVS 177 >gi|240850801|ref|YP_002972201.1| hypothetical protein Bgr_12880 [Bartonella grahamii as4aup] gi|240267924|gb|ACS51512.1| hypothetical protein Bgr_12880 [Bartonella grahamii as4aup] Length = 352 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 8/75 (10%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105 C CD + + + + L L + EK +L+GGEPL+ + ++ Sbjct: 48 CIMCD----CWKIKEKNWHTPESLIPLF---RMLKEKGAASVMLSGGEPLMHPKLKDILL 100 Query: 106 ALNKRGFEIAVETNG 120 LN+ G + + TNG Sbjct: 101 TLNELGLPVELNTNG 115 >gi|303238281|ref|ZP_07324817.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] gi|302594327|gb|EFL64039.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] Length = 452 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 19/91 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR C ++ K G DQ+ D+I++ E LT Sbjct: 108 CNL-----------KCRHC---YMESPSNKFGELPFDQVVDIIKQIEKANVLE---VSLT 150 Query: 92 GGEPLLQVDV-PLIQALNKRGFEI-AVETNG 120 GGEP L+ D+ +I L + G + + TNG Sbjct: 151 GGEPFLRKDIFDIIDKLTQSGIRVPQICTNG 181 >gi|171185431|ref|YP_001794350.1| radical SAM domain-containing protein [Thermoproteus neutrophilus V24Sta] gi|170934643|gb|ACB39904.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta] Length = 377 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 18/96 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C ++ + L+++ E + T Sbjct: 46 CNL-----------KCLHC---YIDAGAEDPRELTTAEALALVDQM---AEVGVPLILFT 88 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ 126 GGEPL++ D + + G ++ + TNGT+ P+ Sbjct: 89 GGEPLVRRDFFEIAERARDAGIKLVLSTNGTLITPE 124 >gi|319940982|ref|ZP_08015319.1| pyruvate formate-lyase 1-activating enzyme [Sutterella wadsworthensis 3_1_45B] gi|319805555|gb|EFW02350.1| pyruvate formate-lyase 1-activating enzyme [Sutterella wadsworthensis 3_1_45B] Length = 244 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 37/143 (25%) Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---D 51 M L I E F ++ G G RF GC +C +C D Sbjct: 1 MPLGRIHSYETFGSVDGPG---------VRFVVFMQGC-----------RMRCVYCHNPD 40 Query: 52 TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNK 109 T + G + ++ + KEG ++GGEPLLQ+D + L + Sbjct: 41 TWRIHA----GEEKSAAEVLRMALRYRPYWGKEGG-ITVSGGEPLLQIDFLIELFELAKT 95 Query: 110 RGFEIAVETNGTIEPPQGIDWIC 132 G ++T G + + W+ Sbjct: 96 EGINTTLDTCG-LPFTKDPAWLV 117 >gi|225868817|ref|YP_002744765.1| radical SAM superfamily protein [Streptococcus equi subsp. zooepidemicus] gi|225702093|emb|CAW99732.1| radical SAM superfamily protein [Streptococcus equi subsp. zooepidemicus] Length = 343 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 21/101 (20%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 +CR C Y +D + + + + +TGGEPL+ + I Sbjct: 16 RCRHC-----WASKNVMAHYTLDDIKAAL---GKIKQLNPYHVTITGGEPLVHDNWFEIL 67 Query: 106 ALNKRGFEIAVE--TNGTI----------EPPQGIDWICVS 134 K F + VE TNG + E + +D+I +S Sbjct: 68 QFAKDNFPV-VELFTNGVLLNENNIRQLSELMEELDYIQIS 107 >gi|148977582|ref|ZP_01814161.1| pyruvate formate lyase activating enzyme 1 [Vibrionales bacterium SWAT-3] gi|145963233|gb|EDK28500.1| pyruvate formate lyase activating enzyme 1 [Vibrionales bacterium SWAT-3] Length = 246 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C +C DT G V+++ + + Sbjct: 25 VF--LQGC-----------LMRCMYCHNRDT----WDLHDGKEVTVEEIINEAKSYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 + G +GGE +LQ + A G ++TNG Sbjct: 68 KASGGGITCSGGEAMLQPEFVRDFFLAAKAEGIHTCLDTNG 108 >gi|124027074|ref|YP_001012394.1| Fe-S oxidoreductase [Hyperthermus butylicus DSM 5456] gi|123977768|gb|ABM80049.1| Fe-S oxidoreductase [Hyperthermus butylicus DSM 5456] Length = 264 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 16/93 (17%) Query: 31 GCNLWSGREQDRLSAQCRFCDT-DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 GCNL +CRFC F +G + D+ A+ + R Sbjct: 50 GCNL-----------RCRFCWAWRFTWTGYGRGVLLSPDEAAERLMRL--ARRTRVRQVR 96 Query: 90 LTGGEPLL--QVDVPLIQALNKRGFEIAVETNG 120 L+GGEP + + + +++A+ G +ETNG Sbjct: 97 LSGGEPTVGWEHLLEVMEAVTGEGLHFVLETNG 129 >gi|42527362|ref|NP_972460.1| radical SAM domain-containing protein [Treponema denticola ATCC 35405] gi|41817947|gb|AAS12371.1| radical SAM domain protein [Treponema denticola ATCC 35405] gi|325474379|gb|EGC77567.1| radical SAM domain-containing protein [Treponema denticola F0402] Length = 247 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 27/111 (24%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFC---------DTDFVGIQGTKGGRYNVDQLADL 73 AVF GCN +C +C + F Q + Y + ++ Sbjct: 19 AAVF--LPGCN-----------IRCPYCHNAELALASPSSFTANQESSNDYYELSEIYTF 65 Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123 +E + V++GGEP + LI+ + ++TNG Sbjct: 66 LERRKNLISG----LVISGGEPFMSPALFELIERAKSLNLAVKIDTNGLFP 112 >gi|327400189|ref|YP_004341028.1| molybdenum cofactor biosynthesis protein A [Archaeoglobus veneficus SNP6] gi|327315697|gb|AEA46313.1| molybdenum cofactor biosynthesis protein A [Archaeoglobus veneficus SNP6] Length = 299 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 19/92 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C + G +V++++ + + + G R +T Sbjct: 21 CNL-----------SCIYC---HREGEVNPGEEMHVEEISRISKAFYELG---IRKVKIT 63 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ D+ ++Q+ EI++ TNGT+ Sbjct: 64 GGEPLLREDIVEIVQSFPPFD-EISITTNGTL 94 >gi|197119727|ref|YP_002140154.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase [Geobacter bemidjiensis Bem] gi|197089087|gb|ACH40358.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase, DUF3463-containing protein [Geobacter bemidjiensis Bem] Length = 332 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + DT ++ Q D ++E +T Sbjct: 38 CNLACSGCGRIRE----YADTIQ--------EMMSLKQCLDSVDE------CPAPVVTIT 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEP L + LI+ + +RG I + TN + + +D + P ++ + G +E Sbjct: 80 GGEPFLYPHIFQLIEKVLERGKHIYLCTN-ALLLEKALDSMKPHPNLVINVHMDGMEE 136 >gi|317488970|ref|ZP_07947500.1| radical SAM superfamily protein [Eggerthella sp. 1_3_56FAA] gi|316912044|gb|EFV33623.1| radical SAM superfamily protein [Eggerthella sp. 1_3_56FAA] Length = 529 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 25/114 (21%) Query: 26 FCRFS------GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 F R + CN +CR C ++ K G + D + DL + Sbjct: 147 FVRTAHWSITGKCNY-----------RCRHC---YMSAPDAKLGEIDHDTMMDLARQIAD 192 Query: 80 TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEI-AVETNGTIEPPQGIDWI 131 G E LTGGEPL++ D + L+ AL I + TNG + + +D + Sbjct: 193 CGILE---VSLTGGEPLVRRDFMELVDALLSYRIRIAQIYTNGKLVDEKLLDQL 243 >gi|297380130|gb|ADI35017.1| Hypothetical protein HPV225_0953 [Helicobacter pylori v225d] Length = 208 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 21/165 (12%) Query: 50 CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQAL 107 CD+ + K + LIE + +LTGGEP L + P LI L Sbjct: 9 CDSLYAVHPKFKETWDYYNDPKSLIERLENLAPNYKHFDFILTGGEPSLYFNNPILISVL 68 Query: 108 N---KRGFEIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP 160 ++ + VE+NG+I P +S K L+ +E K + + + Sbjct: 69 EHFYRKKIPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EERKRINLKALQNI 124 Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205 N +F L+ +N +I+ K +LS++ H Sbjct: 125 LNNAKSAHFKFVLE-------SKNAAQSIAEIQNLLK-QLSLKNH 161 >gi|148269247|ref|YP_001243707.1| radical SAM domain-containing protein [Thermotoga petrophila RKU-1] gi|147734791|gb|ABQ46131.1| Radical SAM domain protein [Thermotoga petrophila RKU-1] Length = 323 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 16/159 (10%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100 R + +C+ C + + +++ +LI + G GGEPLL Sbjct: 15 RCNFRCKHC---YCKAGKPHPEELSFEEIKELILDMKELGTWALDIV---GGEPLLHPQI 68 Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP 160 + ++ + G + + TNG++ + + I K + G + L P+ + Sbjct: 69 LDILAFGKEVGQRLMINTNGSLATKEMVQKI----KKANPDVLVG---VSLEGPEPETND 121 Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199 +FER ++Q + F+ E + I WR Sbjct: 122 FVRGIGNFER-AVQGIKN-FVSEGLQITILNVINRRNWR 158 >gi|320593680|gb|EFX06089.1| anaerobic ribonucleoside-triphosphate reductase [Grosmannia clavigera kw1407] Length = 831 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 24/96 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCV 89 CNL C +C G R + + I E + V Sbjct: 641 CNL-----------ACPWC----HNGPLVNGERDKFTPLDIFRHITET------PHKSLV 679 Query: 90 LTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP 124 ++GGEP + +P ++ L K G I ++ NGT Sbjct: 680 ISGGEPTIHKGLLPFMRLLKKAGVSIKLDHNGTSPA 715 >gi|307596000|ref|YP_003902317.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307551201|gb|ADN51266.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429] Length = 385 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 55/144 (38%), Gaps = 31/144 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C+ C ++ G +VD ++++ G RY L Sbjct: 52 CNL-----------NCKHC---YLSAGKPLSGELSVDDWLLILDKLRDLG---VRYVYLL 94 Query: 92 GGEPLLQVDVPLIQAL---NKRGFEIAVETNGTI--------EPPQGIDWICVS---PKA 137 GGEP L + L++ + GF +++ TNGT+ G+D + VS P Sbjct: 95 GGEPTLLIKRGLLRIIGHAKDLGFYVSMSTNGTLINRENALQLKKAGLDQVQVSLDGPNP 154 Query: 138 GCDLKIKGGQELKLVFPQVNVSPE 161 + I+G VNV E Sbjct: 155 AVNDVIRGFGSFDKAIRAVNVLKE 178 >gi|315645364|ref|ZP_07898489.1| Radical SAM domain protein [Paenibacillus vortex V453] gi|315279406|gb|EFU42712.1| Radical SAM domain protein [Paenibacillus vortex V453] Length = 291 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 20/92 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC K V+ A ++E + Sbjct: 15 CNL-----------ACTFC-----PPTERKANFIKVEDFARRLDEIKPHTRYIYLHVK-- 56 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 57 -GEPLLHPKIDELLDISHEKGFKVNITTNGTL 87 >gi|189426171|ref|YP_001953348.1| radical SAM protein [Geobacter lovleyi SZ] gi|189422430|gb|ACD96828.1| Radical SAM domain protein [Geobacter lovleyi SZ] Length = 354 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 17/95 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL CR C ++ +G + D+ L+EE Sbjct: 15 TQKCNLRC--------VHCR-CSSESTSSEGD----FTTDEGKRLLEE---IAAFSKPVV 58 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 VL+GGEPL++ D+ L + G + + TNG + Sbjct: 59 VLSGGEPLMRPDIFELAEHGTSLGLRMCMATNGAL 93 >gi|229815885|ref|ZP_04446209.1| hypothetical protein COLINT_02941 [Collinsella intestinalis DSM 13280] gi|229808580|gb|EEP44358.1| hypothetical protein COLINT_02941 [Collinsella intestinalis DSM 13280] Length = 363 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 14/104 (13%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 N D+ + +C +C G+ G +++A + I ++ LT Sbjct: 14 NYLRISVTDKCNFRCVYC-MPEKGVPARAHGELLTAEEIARFV---RIVAQEGITRVRLT 69 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVE-----TNGTIEPPQGID 129 GGEPL+ VPLI+ + +E TNG + P D Sbjct: 70 GGEPLVSHRIVPLIEEIRSIS---EIEDISLTTNGALLPRMAAD 110 >gi|189346577|ref|YP_001943106.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Chlorobium limicola DSM 245] gi|189340724|gb|ACD90127.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Chlorobium limicola DSM 245] Length = 244 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 25/134 (18%) Query: 1 MKLYSIKEIFLTLQGE--------GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT 52 M Y GE GG+ F + GC + + + +C +C Sbjct: 1 MPSYPFN-------GEEVRRELPVGGYI--PQSFIDYPGC-IAAVIFTVGCNFRCSYC-- 48 Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPL-IQALNK 109 + + R V++ E + G V+TGGEP + +P ++ K Sbjct: 49 --HNPELVEPERTVVNRRIPFHEVVRLVGRNRSCLDGVVVTGGEPAMHASLPESLRTFRK 106 Query: 110 RGFEIAVETNGTIE 123 G + ++TNG+ Sbjct: 107 LGLRVKLDTNGSYP 120 >gi|284175850|ref|ZP_06389819.1| coenzyme PQQ synthesis protein E (pqqE-4) [Sulfolobus solfataricus 98/2] Length = 378 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 7/91 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + + + + +C C ++ ++ LI+E E + +++G Sbjct: 36 PVVTWNLTRKCNLKCLHC---YINASPEGEDGLTTEEALGLIDEM---AEMKIPLIIMSG 89 Query: 93 GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GEPL++ D L +G ++A+ TNGT+ Sbjct: 90 GEPLMRRDFFELASYARSKGIKLALSTNGTL 120 >gi|288931752|ref|YP_003435812.1| radical SAM protein [Ferroglobus placidus DSM 10642] gi|288894000|gb|ADC65537.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642] Length = 391 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 16/111 (14%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + R + C C + + G ++ +I++ + + +G Sbjct: 39 PVVVWNSTARCNLNCVHC---YAA-ETLNGEELTTEEAKMMIDDL---AAIKVPVILFSG 91 Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTI--------EPPQGIDWICVS 134 GEPL++ D+ LI +G ++ TNGT+ G+D++ VS Sbjct: 92 GEPLMRKDIYELISYAKSKGIHSSLSTNGTLIDEDVAAKLKEAGVDYVGVS 142 >gi|325290635|ref|YP_004266816.1| glycyl-radical enzyme activating protein family [Syntrophobotulus glycolicus DSM 8271] gi|324966036|gb|ADY56815.1| glycyl-radical enzyme activating protein family [Syntrophobotulus glycolicus DSM 8271] Length = 304 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119 G +L + +++ ++ G ++GGEPLLQ+D + L + F +A++T Sbjct: 109 GEWKTSSELLETMKKDRPYYQESGGGVTISGGEPLLQLDFLHNFLPKLKQENFHVALDTA 168 Query: 120 GTIEPPQ 126 G + Sbjct: 169 GCVPFSS 175 >gi|295091670|emb|CBK77777.1| glycerol dehydratase, cobalamin-independent, small subunit [Clostridium cf. saccharolyticum K10] Length = 305 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 KG + V QL +++ T + G L+GGEPL+Q + L++A +G++ A+ET Sbjct: 107 KGKKMTVQQLIRELKKDATTYRRSGGGITLSGGEPLVQYEFAAELLKACQSQGWDTAIET 166 Query: 119 NGT 121 G Sbjct: 167 TGA 169 >gi|261414630|ref|YP_003248313.1| Radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371086|gb|ACX73831.1| Radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327444|gb|ADL26645.1| radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 358 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 15/90 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C +D V R + + D + + + V+T Sbjct: 38 CNL-----------HCLHCGSDCVKDAIPDMPREDFMAVLDKLTPHI---DPKHFIVVIT 83 Query: 92 GGEPLLQVDVPLI-QALNKRGFEIAVETNG 120 GGEPL++ D+ Q + KRG+ + TNG Sbjct: 84 GGEPLMRPDLEECGQEIKKRGYPWGMVTNG 113 >gi|309388472|gb|ADO76352.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Halanaerobium praevalens DSM 2228] Length = 232 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 24/123 (19%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VFC GCN + C +C + T G + Q D EK Sbjct: 22 VFC--QGCNFY-----------CPYCHNKQLIPVETPAGEELMPQ--DYFFRFLKQREKL 66 Query: 85 GRYCVLTGGEPLLQVDV-PLIQALNKR-GFEIAVETNGTIEPPQG-------IDWICVSP 135 +TGGEPLLQ ++ + + + I ++TNG+ ID++ V Sbjct: 67 LDGITITGGEPLLQPNLKEFMLKIKEESNLLIKLDTNGSNFLKLKALIKADLIDYLAVDI 126 Query: 136 KAG 138 K Sbjct: 127 KFS 129 >gi|229000246|ref|ZP_04159815.1| Radical SAM domain protein [Bacillus mycoides Rock3-17] gi|229007769|ref|ZP_04165358.1| Radical SAM domain protein [Bacillus mycoides Rock1-4] gi|228753487|gb|EEM02936.1| Radical SAM domain protein [Bacillus mycoides Rock1-4] gi|228759578|gb|EEM08555.1| Radical SAM domain protein [Bacillus mycoides Rock3-17] Length = 292 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90 CNL C FC + ++ +V+ + +++ + + Sbjct: 15 CNL-----------ACSFC------PPTERQKQFLSVEDFSKRLDQIKPHTDYIYLHVK- 56 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 57 --GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 87 >gi|312622876|ref|YP_004024489.1| molybdenum cofactor biosynthesis protein a [Caldicellulosiruptor kronotskyensis 2002] gi|312203343|gb|ADQ46670.1| molybdenum cofactor biosynthesis protein A [Caldicellulosiruptor kronotskyensis 2002] Length = 314 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 8/112 (7%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + C +C T + + + + + +++ +I G ++ R +TGGEP L+ D Sbjct: 24 DRCNFFCMYCRTKDLYYE--RIDQLSKEEIFRIISAFKKLGIQKLR---ITGGEPFLRDD 78 Query: 101 V-PLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 + +I+ + G E I + TNG ++ + I I SP ++ + + K Sbjct: 79 IVEIIEFAHSIGIENINITTNGWLD-TEKIKKIIKSPLKSVNISLDTLDKEK 129 >gi|300087902|ref|YP_003758424.1| molybdenum cofactor biosynthesis protein A [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527635|gb|ADJ26103.1| molybdenum cofactor biosynthesis protein A [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 329 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 7/93 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +C +C + + +++A + + E + LTG Sbjct: 19 NYLRISVTDRCNLRCMYC-SGASVDHLRHNDILSYEEIAQI---SRVAAELGVNHIRLTG 74 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTI 122 GEPL++ + LI+ L G E I++ TNGT+ Sbjct: 75 GEPLVRPGLSNLIELLTAIPGIEDISLTTNGTL 107 >gi|312114581|ref|YP_004012177.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Rhodomicrobium vannielii ATCC 17100] gi|311219710|gb|ADP71078.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Rhodomicrobium vannielii ATCC 17100] Length = 205 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 40/122 (32%), Gaps = 24/122 (19%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 VFC GC CR+C + G+ G + + T Sbjct: 23 ATVFC--QGCP-----------WACRYCHNASLMRAGSGAGPSWAE-----VRSFLETRR 64 Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPK 136 V +GGEP LQ +P + + GF + + + G +DW+ K Sbjct: 65 GLLDAVVFSGGEPTLQTHLPEAMAEVRAMGFRVGLHSAGPYPARLAAVLPLVDWVGFDVK 124 Query: 137 AG 138 A Sbjct: 125 AP 126 >gi|189348694|ref|YP_001941890.1| molybdenum cofactor biosynthesis protein A [Burkholderia multivorans ATCC 17616] gi|189338832|dbj|BAG47900.1| molybdenum cofactor biosynthesis protein A [Burkholderia multivorans ATCC 17616] Length = 374 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 53/145 (36%), Gaps = 24/145 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN G R +D+ + R + QL + G ++ R +T Sbjct: 52 CNFRCGYCMPREIFG-----SDYAFM--PPADRLSFAQLERIARAFVSLGVEKIR---IT 101 Query: 92 GGEPLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKA 137 GGEPLL+ + LI+ L R E+A+ TNG + G+ + VS A Sbjct: 102 GGEPLLRRHLETLIERLAALTTVDGRPVELALTTNGALLAAKARTLRDAGLTRVTVSLDA 161 Query: 138 GCDLKIKGGQELKLVFPQVNVSPEN 162 D + + + +V E Sbjct: 162 LDDAVFRRMSDADVPVSRVLAGIEA 186 >gi|184200236|ref|YP_001854443.1| molybdenum cofactor biosynthesis protein A [Kocuria rhizophila DC2201] gi|183580466|dbj|BAG28937.1| molybdenum cofactor biosynthesis protein MoaA [Kocuria rhizophila DC2201] Length = 343 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWIT-GEKEGRYCVLTGGEPLLQ 98 D+ + +C +C + +G K R ++ +A+++ I E R LTGGEPL++ Sbjct: 24 DKCNLRCTYC----MPAEGMKWLPRESLLSVAEIVRLAGIAVAEFGVREIRLTGGEPLIR 79 Query: 99 VDV-PLIQALNK--RGFEIAVETNG 120 D+ L+ +L+ G +++ +NG Sbjct: 80 PDLEELVGSLHATLPGIPVSMTSNG 104 >gi|161522430|ref|YP_001585359.1| molybdenum cofactor biosynthesis protein A [Burkholderia multivorans ATCC 17616] gi|160345983|gb|ABX19067.1| molybdenum cofactor biosynthesis protein A [Burkholderia multivorans ATCC 17616] Length = 408 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 53/145 (36%), Gaps = 24/145 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN G R +D+ + R + QL + G ++ R +T Sbjct: 86 CNFRCGYCMPREIFG-----SDYAFM--PPADRLSFAQLERIARAFVSLGVEKIR---IT 135 Query: 92 GGEPLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKA 137 GGEPLL+ + LI+ L R E+A+ TNG + G+ + VS A Sbjct: 136 GGEPLLRRHLETLIERLAALTTVDGRPVELALTTNGALLAAKARTLRDAGLTRVTVSLDA 195 Query: 138 GCDLKIKGGQELKLVFPQVNVSPEN 162 D + + + +V E Sbjct: 196 LDDAVFRRMSDADVPVSRVLAGIEA 220 >gi|157694065|ref|YP_001488527.1| molybdenum cofactor biosynthesis protein A [Bacillus pumilus SAFR-032] gi|157682823|gb|ABV63967.1| molybdenum cofactor biosynthesis protein A [Bacillus pumilus SAFR-032] Length = 335 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 23/158 (14%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA--DLIEEQWITGEKEGRYCVL--TGGEPL 96 DR + +C +C I G N ++L + IE+ K+ + TGGEPL Sbjct: 21 DRCNFRCTYC--MPAEIFGPDYPFLNKEELLSFEEIEQLATLFAKDLGVVKIRITGGEPL 78 Query: 97 LQVDVP-LIQALNK-RGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153 L+ D+P LI+ L+ G E IA+ TNGT+ P K+K ++ Sbjct: 79 LRKDLPILIEKLSNIPGIEDIAMTTNGTLLPV-------------YADKLKKAGLQRVTI 125 Query: 154 PQVNVSPENYIGFDFERFSLQPM-DGPFLEENTNLAIS 190 +++P+ + + S+Q + DG + LAI Sbjct: 126 SLDSLNPDRFKQMNGRNISIQKVFDGIEAAKKAGLAIK 163 >gi|152978248|ref|YP_001343877.1| pyruvate formate-lyase activating enzyme [Actinobacillus succinogenes 130Z] gi|150839971|gb|ABR73942.1| pyruvate formate-lyase activating enzyme [Actinobacillus succinogenes 130Z] Length = 245 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 24/112 (21%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C +C DT G +V++L + Sbjct: 21 IRFILFLQGC-----------LMRCLYCHNRDT----WDLHGGKEISVEELMKEVVTYKP 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIEPPQGID 129 G +GGE +LQ L +A G + ++TNG + + ID Sbjct: 66 FMRASGGGVTASGGEAILQPKFVLEWFRACKAEGIDTCLDTNGFVRHYELID 117 >gi|222109327|ref|YP_002551591.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Acidovorax ebreus TPSY] gi|221728771|gb|ACM31591.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Acidovorax ebreus TPSY] Length = 256 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 41/124 (33%), Gaps = 26/124 (20%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 GR+A VFC GC +C +C G +E+ Sbjct: 28 GRLAAVVFC--QGCP-----------WRCGYC-----HNAGLLDAAAPAPHRWSEVEQLL 69 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 T V +GGEP LQ +P + + GF + T G +DW+ Sbjct: 70 HTRRGLLDGVVFSGGEPTLQAALPDALARVRALGFATGLHTAGMYPERLQALLPLLDWVG 129 Query: 133 VSPK 136 + K Sbjct: 130 LDIK 133 >gi|83592624|ref|YP_426376.1| molybdenum cofactor synthesis protein [Rhodospirillum rubrum ATCC 11170] gi|83575538|gb|ABC22089.1| Molybdenum cofactor synthesis protein [Rhodospirillum rubrum ATCC 11170] Length = 330 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 10/88 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +CR+C +G + +V L DL + R LTGGEPL++ Sbjct: 18 DRCDLRCRYC----MGPHPVFIPKRDVLSLEDLGAIAGAFVDLGVRKIRLTGGEPLVRRG 73 Query: 101 VP-LIQAL---NKRGF--EIAVETNGTI 122 +P LI AL G EIA+ TNG++ Sbjct: 74 LPTLIAALAVHKAEGRLDEIALSTNGSL 101 >gi|15898640|ref|NP_343245.1| coenzyme PQQ synthesis protein E (pqqE-4) [Sulfolobus solfataricus P2] gi|13815097|gb|AAK42035.1| Coenzyme PQQ synthesis protein E (pqqE-4) [Sulfolobus solfataricus P2] gi|261603137|gb|ACX92740.1| Radical SAM domain protein [Sulfolobus solfataricus 98/2] Length = 378 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 7/91 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + + + + +C C ++ ++ LI+E E + +++G Sbjct: 36 PVVTWNLTRKCNLKCLHC---YINASPEGEDGLTTEEALGLIDEM---AEMKIPLIIMSG 89 Query: 93 GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GEPL++ D L +G ++A+ TNGT+ Sbjct: 90 GEPLMRRDFFELASYARSKGIKLALSTNGTL 120 >gi|152977632|ref|YP_001377149.1| radical SAM domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026384|gb|ABS24154.1| Radical SAM domain protein [Bacillus cytotoxicus NVH 391-98] Length = 292 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90 CNL C FC + ++ +V+ + +++ + + Sbjct: 15 CNL-----------ACSFC------PPTERQKQFLSVEDFSKRLDQIKPHTDYIYLHVK- 56 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 57 --GEPLLHPKIDKLLDLSHEKGFKVNITTNGTL 87 >gi|187933302|ref|YP_001886033.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum B str. Eklund 17B] gi|187721455|gb|ACD22676.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum B str. Eklund 17B] Length = 310 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 10/96 (10%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119 G +V ++ D + + + L+GGEPLLQ + L ++ G +ET Sbjct: 110 GKEMSVKEVLDELNKDSSQFRRSNGGVTLSGGEPLLQHEFALEILKGCKSIGIHTTIETT 169 Query: 120 GTIE--PPQGID-WICVSPKAGCDLKIKGGQELKLV 152 G ++ + I W+ + L IK E K + Sbjct: 170 GYVDKEILKKIAPWVDL-----VLLDIKTLNEDKHI 200 >gi|298345957|ref|YP_003718644.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Mobiluncus curtisii ATCC 43063] gi|298236018|gb|ADI67150.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Mobiluncus curtisii ATCC 43063] Length = 266 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 46/150 (30%), Gaps = 37/150 (24%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +VF GC C +C + I Y L +L+ + Sbjct: 35 VASVF--LQGCP-----------WNCGYC-QNVAIIDPRAPAGYQEADLWELLGRRRGLL 80 Query: 82 EKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICV 133 + V +GGEP Q P Q GF + + T G +DW+ + Sbjct: 81 DG----VVFSGGEPTRQAALTPAAQRARDLGFLVGLHTGGAYPKRLEQLLNAGLLDWVGL 136 Query: 134 SPKAGCDLKIKGGQELKLVFPQVNVSPENY 163 K L +PQV P+ + Sbjct: 137 DVKG-----------LAQNYPQVVGRPQAH 155 >gi|155967346|gb|ABU41510.1| NirJ1 [Heliophilum fasciatum] Length = 392 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 17/96 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C + D+D + G + I++ + +L+ Sbjct: 47 CNLHC--------IHC-YSDSDEI----EYPGELTTAEAKKFIDDL---ADFNVPVLLLS 90 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 GGEPL++ D+ L++ +G TNGT+ P+ Sbjct: 91 GGEPLMRPDIFELVEYARSKGIRTTFSTNGTLITPE 126 >gi|308184553|ref|YP_003928686.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori SJM180] gi|308060473|gb|ADO02369.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori SJM180] Length = 321 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 26/166 (15%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLLQV-DV 101 +C++C + T ++ ++L +++E I ++ + +TGGEPLL+ Sbjct: 24 RCQYC------MPATPLDFFDDEELLPLDNVLEFLKIAIDEGVKKIRITGGEPLLRKGLD 77 Query: 102 PLIQALNKRGFEIA--VETNGTI-------EPPQGIDWICV---SPKAGCDLKIKGGQEL 149 I L+ E+A + TNG + G+ + V S K+ LKI L Sbjct: 78 EFIAKLHAYNKEVALVLSTNGFLLKKMAKGLKDAGLSRVNVSLDSLKSDRVLKISQKDAL 137 Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 K + S + + + ++ M G +E L + Y Sbjct: 138 KNALEGIEESLKVGLKL---KLNMVVMKGVNDDEILEL-LEYAKNR 179 >gi|302337968|ref|YP_003803174.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Spirochaeta smaragdinae DSM 11293] gi|301635153|gb|ADK80580.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Spirochaeta smaragdinae DSM 11293] Length = 253 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 21/107 (19%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQ 77 GRVA +F +GCNL +C +C + D V Q ++ ++ ++ + ++ Sbjct: 16 GRVAAVIF--TAGCNL-----------RCPYCHNADLVMGQISQEEGKSIPEIEAFLRKR 62 Query: 78 WITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123 ++GGEPLL L+ L ++TNGT+ Sbjct: 63 APLLGG----VCISGGEPLLSPGLFDLVALLVAMEMPWKLDTNGTLP 105 >gi|301057214|ref|ZP_07198343.1| radical SAM domain protein [delta proteobacterium NaphS2] gi|300448665|gb|EFK12301.1| radical SAM domain protein [delta proteobacterium NaphS2] Length = 341 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 17/98 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR +G G + + +++++ G +LT Sbjct: 9 CNLNC--------VHCR-----AGSERGPYPGELDTKKCLEILQQIQQVG---NPIVILT 52 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGI 128 GGEPLL+ D+ L +A + G + + TNGT+ PQ I Sbjct: 53 GGEPLLREDIFDLAKAGTEMGLRMVMATNGTLMTPQRI 90 >gi|302883056|ref|XP_003040432.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256721312|gb|EEU34719.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 833 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 28/147 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C G + D+ T K V++ Sbjct: 645 CNL-----------ACPWC-----HNGPVVNGVRDDVTAQDVFRHITSTSHKC---LVIS 685 Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSPKAGCD-LK 142 GGEP + +P ++ L K G I +++NGT + +D++ + K + K Sbjct: 686 GGEPTIHKGLLPFMRLLKKAGVTIKLDSNGTSPEILRQVFSEKLVDFVAMDIKCALEKYK 745 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFE 169 G+ +K Q +++ G +E Sbjct: 746 TVAGKRIKPKVLQASINLIKESGVPYE 772 >gi|73538842|ref|YP_299209.1| radical SAM family protein [Ralstonia eutropha JMP134] gi|72122179|gb|AAZ64365.1| Radical SAM [Ralstonia eutropha JMP134] Length = 387 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 25/112 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + DT+F G + D++ + +L+ Sbjct: 36 CNLNCKHCYSTSA------DTNF-------KGELTTAEALDVLGQLKAA---HAPALILS 79 Query: 92 GGEPLLQVDVPLIQAL-NKRGFEIAVETNGTI--------EPPQGIDWICVS 134 GGEPLL+ D+ I A + GF +++ +NGT+ G D++ VS Sbjct: 80 GGEPLLREDLYTIAARAREMGFHLSLSSNGTLLDAAHAARLAESGFDYVGVS 131 >gi|134300007|ref|YP_001113503.1| radical SAM domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052707|gb|ABO50678.1| Radical SAM domain protein [Desulfotomaculum reducens MI-1] Length = 390 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 18/97 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR C + K N + I + E + + + Sbjct: 47 CNL-----------RCRHC---YSESDSKKYNELNTQEAKQFINDL---AEFKVPVILFS 89 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQG 127 GGEPL++ D L ++G + TNGT+ P+ Sbjct: 90 GGEPLVRPDFFELAGYATQKGIRTTISTNGTLITPEA 126 >gi|145341975|ref|XP_001416074.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576298|gb|ABO94366.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 324 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 31/136 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTK--GGRYNVDQLADLIEEQ-W 78 VF GC +C FC D+ + T G +V+ + ++++ Sbjct: 87 VF--LQGC-----------EKRCAFCCNVDSTHAALAKTPNPGRTMSVNDIVEILKRNRK 133 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNGTIE------PPQGI 128 EG L+GGE LLQ ++A+ ++ G +A++T + + + Sbjct: 134 YYASSEGGGLTLSGGECLLQP--AFVEAVAIKTHEIGLTVAIDTAASGDAETWNRVLPHV 191 Query: 129 DWICVSPKAGCDLKIK 144 D + + K+ K K Sbjct: 192 DVVLLCVKSSSLEKYK 207 >gi|315657548|ref|ZP_07910430.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492020|gb|EFU81629.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 266 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 47/150 (31%), Gaps = 37/150 (24%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +VF GC C +C + I Y L +L+ + Sbjct: 35 VASVF--LQGCP-----------WNCGYC-QNVAIIDPRTPAGYQEADLWELLGRRRGLL 80 Query: 82 EKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICV 133 + V +GGEP Q VP Q GF + + T G +DW+ + Sbjct: 81 DG----VVFSGGEPTRQTALVPAAQRARDLGFLVGLHTGGAYPKRLEQLLNAGLLDWVGL 136 Query: 134 SPKAGCDLKIKGGQELKLVFPQVNVSPENY 163 K L +PQV P+ + Sbjct: 137 DVKG-----------LAQNYPQVVGRPQAH 155 >gi|114567780|ref|YP_754934.1| ribonucleoside-triphosphate reductase, anaerobic-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338715|gb|ABI69563.1| ribonucleoside-triphosphate reductase, anaerobic-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 254 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 44/90 (48%), Gaps = 12/90 (13%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETN 119 G Y+++ + + + E+ + V++GGEP L ++ ++ + + G+ I +++N Sbjct: 64 DGKTYDIESILEFLRERKGFLDA----VVISGGEPTLHPELAQDLRRIKEIGYLIKLDSN 119 Query: 120 GTIE-------PPQGIDWICVSPKAGCDLK 142 G+ + +D++ + KA D K Sbjct: 120 GSNPELLAYLLQEKLLDYVAMDIKAPLDFK 149 >gi|332159146|ref|YP_004424425.1| heme biosynthesis protein [Pyrococcus sp. NA2] gi|331034609|gb|AEC52421.1| heme biosynthesis protein [Pyrococcus sp. NA2] Length = 543 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 51/135 (37%), Gaps = 16/135 (11%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104 +C+ C + ++++ L+++ G L+GGEP + + ++ Sbjct: 158 RCKHC---YQRADKPLSTELSLEEKLMLVDQLDKAGVAA---VALSGGEPTIHPHFLRVV 211 Query: 105 QALNKRGFEIAVETNG-TI--------EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155 + L+ RG +V TNG T GI ++ VS + K + + + + Sbjct: 212 KELSSRGIHTSVATNGWTFADKEKLEEAIKAGIKYVEVSVDSAKPEKHDEFRGIPGAWER 271 Query: 156 VNVSPENYIGFDFER 170 + EN + Sbjct: 272 AVKALENAVKLGISH 286 >gi|303238469|ref|ZP_07325003.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] gi|302593867|gb|EFL63581.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] Length = 296 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 20/92 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC K VD ++++ + + Sbjct: 15 CNL-----------ACSFC-----PQTRRKAEFMKVDTFGKILDKIKPHTDYIYFHVK-- 56 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL ++ + ++GF++ + TNGT+ Sbjct: 57 -GEPLLHPEIDKFLDLSCEKGFKVNITTNGTL 87 >gi|292656905|ref|YP_003536802.1| putative molybdenum cofactor biosynthesis protein A [Haloferax volcanii DS2] gi|291370757|gb|ADE02984.1| probable molybdenum cofactor biosynthesis protein A [Haloferax volcanii DS2] Length = 320 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 61/180 (33%), Gaps = 29/180 (16%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + C +C DT G + D + +E + E TGGE Sbjct: 20 DRCNFDCVYCHNEGLGDTR--GPMDASDEEMSADDVVRFLE---VVEEYGVEKVKFTGGE 74 Query: 95 PLLQVDVPLIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS-----PKAGCDLK 142 P+L+ D+ I E ++ TNGT G+D + VS P+A + Sbjct: 75 PMLRADLEEIIRRTPDSMETSLTTNGTFLGDRAEDLVAAGLDRVNVSQDALDPEAFAQIT 134 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202 G + +V + + L + + + Y +NP +L + Sbjct: 135 KSGA------YDKVTEGVKAAVDAGLTPVKLNMVVFTKTAGHVEEMVEYVAENPGLQLQL 188 >gi|303243581|ref|ZP_07329923.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1] gi|302486142|gb|EFL49064.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1] Length = 466 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C+ C + N ++ I+ I + Sbjct: 123 CNL-----------RCKHC---YANAGKPLEDELNTEEALKTID---ILANSGVVAIAFS 165 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPL++ D+ LI ++++ +NGT+ Sbjct: 166 GGEPLMRKDLFELIDRAKDYNMQVSIASNGTM 197 >gi|288817468|ref|YP_003431815.1| predicted Fe-S oxidoreductases [Hydrogenobacter thermophilus TK-6] gi|76667607|dbj|BAE45632.1| hypothetical protein [Hydrogenobacter thermophilus] gi|288786867|dbj|BAI68614.1| predicted Fe-S oxidoreductases [Hydrogenobacter thermophilus TK-6] gi|308751075|gb|ADO44558.1| Radical SAM domain protein [Hydrogenobacter thermophilus TK-6] Length = 360 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 25/110 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C+ C + K + ++ L+ G ++ +L+ Sbjct: 33 CNL-----------HCKHC---YSSANKDK-EELSYEEAISLVHRLPEAG---VKFTILS 74 Query: 92 GGEPLLQVDVPLIQA-LNKRGFEIAVETNGTI------EPPQGIDWICVS 134 GGEPLL+ D+ I L +RG + TNG + E + D++ +S Sbjct: 75 GGEPLLREDLFHIARLLKERGIRTYLSTNGILVKEHLKEIKECFDYVGIS 124 >gi|322417559|ref|YP_004196782.1| Radical SAM domain-containing protein [Geobacter sp. M18] gi|320123946|gb|ADW11506.1| Radical SAM domain protein [Geobacter sp. M18] Length = 357 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 30/138 (21%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL CR C ++ +G + ++ L++E + Sbjct: 15 TQRCNLKC--------VHCR-CSSELTSSEGD----FTTEEGKKLLKE---IADFSKPVV 58 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147 VL+GGEPL++ D+ L + G + + TNG + D +C K+K Sbjct: 59 VLSGGEPLMRPDIFELAEYGTSLGLRMCMATNGALV----TDEVC--------EKMKKAD 106 Query: 148 ELKLVFPQVNVSPENYIG 165 +K+V ++ S + Sbjct: 107 -IKMVSLSLDGSTADVHD 123 >gi|170690052|ref|ZP_02881219.1| coenzyme PQQ biosynthesis protein E [Burkholderia graminis C4D1M] gi|170144487|gb|EDT12648.1| coenzyme PQQ biosynthesis protein E [Burkholderia graminis C4D1M] Length = 414 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 19/135 (14%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVL 90 LW E R C FC + + T R + +Q ++ E G + + Sbjct: 27 PLWLLAELTYRCPLHCAFC---YNPVDYTNHNRELSTEQWLGVLREARALGAAQLGF--- 80 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 +GGEPL++ D+ L+ K GF + T+G + ++ K DLK G + Sbjct: 81 SGGEPLMRDDLEVLVGEARKLGFYTNLITSG----------VGLTDKRLGDLKAAGLDHI 130 Query: 150 KLVFPQVNVSPENYI 164 +L F +++ Sbjct: 131 QLSFQDSTQELNDFL 145 >gi|325831056|ref|ZP_08164380.1| radical SAM domain protein [Eggerthella sp. HGA1] gi|325486977|gb|EGC89423.1| radical SAM domain protein [Eggerthella sp. HGA1] Length = 475 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 25/114 (21%) Query: 26 FCRFS------GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 F R + CN +CR C ++ K G + D + DL + Sbjct: 93 FVRTAHWSITGKCNY-----------RCRHC---YMSAPDAKLGEIDHDTMMDLARQIAD 138 Query: 80 TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEI-AVETNGTIEPPQGIDWI 131 G E LTGGEPL++ D + L+ AL I + TNG + + +D + Sbjct: 139 CGILE---VSLTGGEPLVRRDFMELVDALLSYRIRIAQIYTNGKLVDEKLLDQL 189 >gi|325848800|ref|ZP_08170310.1| putative pyruvate formate-lyase 1-activating enzyme [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480444|gb|EGC83506.1| putative pyruvate formate-lyase 1-activating enzyme [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 305 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 KG V+++ + +++ + L+GGE L+Q D L++A RG+ A+ET Sbjct: 107 KGKNMTVEEVINELKKDESYYHRSNGGITLSGGEALMQADFCRELLKACKARGWHTAIET 166 Query: 119 NG 120 G Sbjct: 167 EG 168 >gi|160915923|ref|ZP_02078131.1| hypothetical protein EUBDOL_01946 [Eubacterium dolichum DSM 3991] gi|158432399|gb|EDP10688.1| hypothetical protein EUBDOL_01946 [Eubacterium dolichum DSM 3991] Length = 249 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 32/127 (25%) Query: 8 EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F ++ G G +F +GC +C++C DT + Sbjct: 11 ESFGSVDGPGVRFV----IF--LNGC-----------QMRCKYCHNVDTWQMQE-----A 48 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG- 120 D+L K+G ++GGEPLLQ+D + L + +G ++T+G Sbjct: 49 NMTSDELLKKALRYRSY-WKQGGGITVSGGEPLLQIDFVLELFEKAKAKGVHTVLDTSGN 107 Query: 121 --TIEPP 125 TIE P Sbjct: 108 PFTIEQP 114 >gi|86148860|ref|ZP_01067118.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. MED222] gi|85833353|gb|EAQ51553.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. MED222] Length = 246 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C +C DT G V+++ + + Sbjct: 25 VF--LQGC-----------LMRCMYCHNRDT----WDLHDGKEVTVEEIINEAKSYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 + G +GGE +LQ + +A G ++TNG Sbjct: 68 KASGGGITCSGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNG 108 >gi|322378988|ref|ZP_08053392.1| molybdenum cofactor biosynthesis protein A (MoaA) [Helicobacter suis HS1] gi|321148592|gb|EFX43088.1| molybdenum cofactor biosynthesis protein A (MoaA) [Helicobacter suis HS1] Length = 350 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 22/145 (15%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 +C++C + T ++ ++L ++E + ++ R +TGGEPL++ D+ Sbjct: 52 RCQYC------MPTTPMDFFDREELLPLDKMLEFLKVAIDEGIRKIRITGGEPLIRKDLA 105 Query: 103 -LIQALNKRGFEIA--VETNGTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQEL 149 I ++ +++ + TNG + D + V S KA KI L Sbjct: 106 SFIAKIHAYNPQVSLGLTTNGFLLKAHARDLKEAGLERVNVSLDSLKAERVAKISQKDGL 165 Query: 150 KLVFPQVNVSPENYIGFDFERFSLQ 174 K V +NV+ +G F LQ Sbjct: 166 KAVLEGINVALRMGLGLKFNMVVLQ 190 >gi|312128061|ref|YP_003992935.1| molybdenum cofactor biosynthesis protein a [Caldicellulosiruptor hydrothermalis 108] gi|311778080|gb|ADQ07566.1| molybdenum cofactor biosynthesis protein A [Caldicellulosiruptor hydrothermalis 108] Length = 308 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 54/112 (48%), Gaps = 8/112 (7%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + C +C T + + + + + +++ +I G ++ R +TGGEP L+ D Sbjct: 18 DRCNFFCMYCRTKDLYYE--RIDQLSKEEIFRIISAFKKLGIQKLR---ITGGEPFLRDD 72 Query: 101 V-PLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 + +I+ + G E I + TNG ++ + I + SP ++ + + K Sbjct: 73 IFEIIEFAHSIGIENINITTNGWLD-TEKIKKVIKSPLKSVNISLDTLDKEK 123 >gi|303242788|ref|ZP_07329256.1| pyruvate formate-lyase activating enzyme [Acetivibrio cellulolyticus CD2] gi|302589678|gb|EFL59458.1| pyruvate formate-lyase activating enzyme [Acetivibrio cellulolyticus CD2] Length = 241 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 33/130 (25%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F T+ G G RF GC +C +C DT Sbjct: 11 ESFGTVDGPG---------IRFVIFMQGCPF-----------RCLYCHNPDT----WSND 46 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 +G Y+VD++ D I + G ++GGEPLLQ + L + + G ++T Sbjct: 47 RGILYSVDEVFDKIRRYIPYFKNSGGGVTVSGGEPLLQAEFITELFKKCKEEGIHTTIDT 106 Query: 119 NGTIEPPQGI 128 NG ++ I Sbjct: 107 NGFVDSNSDI 116 >gi|118444986|ref|YP_878968.1| pyruvate formate-lyase [Clostridium novyi NT] gi|118135442|gb|ABK62486.1| pyruvate formate-lyase [Clostridium novyi NT] Length = 299 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 6/82 (7%) Query: 43 LSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 +C C +T + G V+++ +++ + + G L+GGEPL Q Sbjct: 78 DKNKCINCGKCVETCYANALNMAGTSKKVEEIIEVLRKDNSYYRRSGGGITLSGGEPLYQ 137 Query: 99 VD--VPLIQALNKRGFEIAVET 118 D + L++A +G AVET Sbjct: 138 GDFAIELLKACKDKGCHTAVET 159 >gi|90412861|ref|ZP_01220861.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium profundum 3TCK] gi|90326220|gb|EAS42647.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium profundum 3TCK] Length = 246 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 55/181 (30%), Gaps = 45/181 (24%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G +V+++ Sbjct: 21 IRFIIFMQGC-----------LMRCQYCHNRDT----WDLHDGREVSVEEIMKEAVSYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWIC 132 + G +GGE +LQ + +A G ++TNG T + +D Sbjct: 66 FMKASGGGVTASGGEAMLQPEFIRDFFRAAQAEGIHTCLDTNGYIRKHTDVIDEVLD--- 122 Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC 192 DL + +++ Q V N DF R+ + I Y Sbjct: 123 -----ATDLVMLDLKQMDDTVHQELVGVSNKRVLDFARY--------LHKRGQKTWIRYV 169 Query: 193 F 193 Sbjct: 170 I 170 >gi|257792682|ref|YP_003183288.1| Radical SAM domain-containing protein [Eggerthella lenta DSM 2243] gi|257476579|gb|ACV56899.1| Radical SAM domain protein [Eggerthella lenta DSM 2243] Length = 475 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 25/114 (21%) Query: 26 FCRFS------GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 F R + CN +CR C ++ K G + D + DL + Sbjct: 93 FVRTAHWSITGKCNY-----------RCRHC---YMSAPDAKLGEIDHDTMMDLARQIAD 138 Query: 80 TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEI-AVETNGTIEPPQGIDWI 131 G E LTGGEPL++ D + L+ AL I + TNG + + +D + Sbjct: 139 CGILE---VSLTGGEPLVRRDFMELVDALLSYRIRIAQIYTNGKLVDEKLLDQL 189 >gi|313498597|gb|ADR59963.1| Radical SAM domain-containing protein [Pseudomonas putida BIRD-1] Length = 476 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 31/116 (26%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GCNL C +C D D + + G + + +E E R Sbjct: 110 TGCNL-----------SCTYCYKEDLD----KPSAGKKMSTATAEASVEMLLKESPNEQR 154 Query: 87 Y-CVLTGGEPLLQVDVPLIQ--------ALNKRGFEIA--VETNGTIEPPQGIDWI 131 Y V GGEPL + PLI+ + G ++ + TN T+ + IDW+ Sbjct: 155 YSVVFFGGEPL--SNRPLIEHMVAYCERRFAEAGKQVEFIMTTNATLLTEEIIDWL 208 >gi|296395235|ref|YP_003660119.1| molybdenum cofactor biosynthesis protein A [Segniliparus rotundus DSM 44985] gi|296182382|gb|ADG99288.1| molybdenum cofactor biosynthesis protein A [Segniliparus rotundus DSM 44985] Length = 370 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGG-RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C G+Q G V+++ L+ + TGGEPLL Sbjct: 44 DRCNLRCTYC-MPEEGMQWLPGEDLLTVEEIVRLVR--IAVTKLHVAEVRFTGGEPLLHK 100 Query: 100 DVP----LIQALNKRGFEIAVETNG 120 D+P L AL R E+++ TNG Sbjct: 101 DLPTILRLCSALRPRA-ELSITTNG 124 >gi|225175614|ref|ZP_03729608.1| Radical SAM domain protein [Dethiobacter alkaliphilus AHT 1] gi|225168943|gb|EEG77743.1| Radical SAM domain protein [Dethiobacter alkaliphilus AHT 1] Length = 391 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + T+ G+ +D LA+ + + + Sbjct: 47 CNLKCIHCYMGSENI------KYENEMSTEEGKKFIDDLAE----------FKSPVILFS 90 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GGEPL++ D L + RG + + TNGT+ Sbjct: 91 GGEPLIRPDFFELAEYATSRGIRVTISTNGTL 122 >gi|212696392|ref|ZP_03304520.1| hypothetical protein ANHYDRO_00929 [Anaerococcus hydrogenalis DSM 7454] gi|212676670|gb|EEB36277.1| hypothetical protein ANHYDRO_00929 [Anaerococcus hydrogenalis DSM 7454] Length = 305 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 KG V+++ + +++ + L+GGE L+Q D L++A RG+ A+ET Sbjct: 107 KGKNMTVEEVINELKKDESYYHRSNGGITLSGGEALMQADFCRELLKACKARGWHTAIET 166 Query: 119 NG 120 G Sbjct: 167 EG 168 >gi|188590775|ref|YP_001921048.1| glycyl-radical enzyme activating family protein [Clostridium botulinum E3 str. Alaska E43] gi|188501056|gb|ACD54192.1| glycyl-radical enzyme activating family protein [Clostridium botulinum E3 str. Alaska E43] Length = 310 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 10/96 (10%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119 G +V ++ D + + + L+GGEPLLQ + L ++ G +ET Sbjct: 110 GKEMSVKEVLDELNKDSSQFRRSNGGVTLSGGEPLLQHEFALEILKGCKSIGIHTTIETT 169 Query: 120 GTIE--PPQGID-WICVSPKAGCDLKIKGGQELKLV 152 G ++ + I W+ + L IK E K + Sbjct: 170 GYVDKEILRKIAPWVDL-----VLLDIKTLNEDKHI 200 >gi|91784732|ref|YP_559938.1| molybdenum cofactor biosynthesis protein A [Burkholderia xenovorans LB400] gi|91688686|gb|ABE31886.1| GTP cyclohydrolase subunit MoaA [Burkholderia xenovorans LB400] Length = 369 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 60/150 (40%), Gaps = 29/150 (19%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D D+ + + + +++LA + + + LTGG Sbjct: 45 DRCNFRCVYCMPRAVFDKDYTFLPHSALLSFEEIERLARIFVAHGVEKIR------LTGG 98 Query: 94 EPLLQVDVP-LIQALNK------RGFEIAVETNGTI-------EPPQGIDWICVSPKAGC 139 EPLL+ ++ LI L + R ++ + TNG++ G+ + VS A Sbjct: 99 EPLLRKNLEFLIDRLARLTTPAGRPLDLTLTTNGSLLERKARSLKDAGLTRVTVSLDALD 158 Query: 140 DLKIKGGQELKLVFPQV--NVSPENYIGFD 167 D + + V ++ + +G Sbjct: 159 DTLFRRMNDADFAVADVLDGIAAAHAVGLA 188 >gi|148547529|ref|YP_001267631.1| radical SAM domain-containing protein [Pseudomonas putida F1] gi|148511587|gb|ABQ78447.1| Radical SAM domain protein [Pseudomonas putida F1] Length = 476 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 31/116 (26%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GCNL C +C D D + + G + + +E E R Sbjct: 110 TGCNL-----------SCTYCYKEDLD----KPSAGKKMSTATAEASVEMLLKESPNEQR 154 Query: 87 Y-CVLTGGEPLLQVDVPLIQ--------ALNKRGFEIA--VETNGTIEPPQGIDWI 131 Y V GGEPL + PLI+ + G ++ + TN T+ + IDW+ Sbjct: 155 YSVVFFGGEPL--SNRPLIEHMVAYCERRFAEAGKQVEFIMTTNATLLTEEIIDWL 208 >gi|296273199|ref|YP_003655830.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Arcobacter nitrofigilis DSM 7299] gi|296097373|gb|ADG93323.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Arcobacter nitrofigilis DSM 7299] Length = 225 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 30/120 (25%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GCN+ +C++C D F +K G Y+++ + ++ + + Sbjct: 27 FKGCNM-----------RCQYCYNNDIVF-----SKNGNYSLNDILTFLKNRVGMLDA-- 68 Query: 86 RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAG 138 VL+GGE L + + + + GF+I ++TNG ID++ + KA Sbjct: 69 --VVLSGGEASLYDLTAICKKIKELGFKIKLDTNGLNLVLIKKLIKEKLIDYMAIDFKAP 126 >gi|307730551|ref|YP_003907775.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. CCGE1003] gi|307585086|gb|ADN58484.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. CCGE1003] Length = 369 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 67/170 (39%), Gaps = 27/170 (15%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + + +++ L G ++ R LTGGE Sbjct: 45 DRCNFRCVYCMPRAIFDKDYAFLPHS--ALLSFEEIERLARLFVAHGVEKIR---LTGGE 99 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ ++ LI+ L + R ++ + TNG++ G+ + VS A D Sbjct: 100 PLLRKNLEFLIERLAQLTTPTGRPLDLTLTTNGSLLARKARSLKDAGLSRVTVSLDALDD 159 Query: 141 LKIKGGQELKLVFPQV--NVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 + + V ++ +G + ++ G E +A Sbjct: 160 TLFRRMNDADFAVADVLDGIAAAQAVGLAPLKVNMVVKRGTNDSEIVPMA 209 >gi|257457814|ref|ZP_05622974.1| radical SAM domain protein [Treponema vincentii ATCC 35580] gi|257444776|gb|EEV19859.1| radical SAM domain protein [Treponema vincentii ATCC 35580] Length = 256 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 52/143 (36%), Gaps = 27/143 (18%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQ-------LADLI 74 AVF GCNL +C +C +++ V +G N Q + + Sbjct: 19 AAVF--LPGCNL-----------RCPYCYNSELVCASIFEGPMRNPLQSGNNDYVPIEAV 65 Query: 75 EEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE--PPQGIDWI 131 E + + V++GGE LL LI K G + ++TNG + + Sbjct: 66 YEHIEKRKAVLQGLVISGGEALLSPVLTELILRAKKTGLAVKLDTNGLLPDALSMLLHDK 125 Query: 132 CVSP-KAGCDLKIK--GGQELKL 151 + P D+K ELK Sbjct: 126 TLCPDMIAIDIKTDPARYHELKF 148 >gi|332083967|gb|EGI89176.1| glycyl-radical enzyme activating family protein [Shigella boydii 5216-82] Length = 291 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 65/177 (36%), Gaps = 35/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I + L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIF-FRTSGGVTLSGGEVLMQAEFATRF 137 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 138 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQAWDVVKMNLPRV 194 >gi|298682218|gb|ADI95284.1| PeaB [Pseudomonas putida] Length = 476 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 31/116 (26%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GCNL C +C D D + + G + + +E E R Sbjct: 110 TGCNL-----------SCTYCYKEDLD----KPSAGKKMSTATAEASVEMLLKESPNEQR 154 Query: 87 Y-CVLTGGEPLLQVDVPLIQ--------ALNKRGFEIA--VETNGTIEPPQGIDWI 131 Y V GGEPL + PLI+ + G ++ + TN T+ + IDW+ Sbjct: 155 YSVVFFGGEPL--SNRPLIEHMVAYCERRFAEAGKQVEFIMTTNATLLTEEIIDWL 208 >gi|167945021|ref|ZP_02532095.1| Radical SAM domain protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 275 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 14/92 (15%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C D + D++ L+++ G+ VLT Sbjct: 15 CNL-----------ACAHCYMDAATREAGSEAELTTDEVKALLDQIRERGDDT--MVVLT 61 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GGEPLL+ D+ L+ N G + V TNG + Sbjct: 62 GGEPLLRRDLEALVAHGNGLGLAMVVGTNGVL 93 >gi|17402569|dbj|BAB78727.1| quinohemoprotein amine dehydrogenase unknown subunit [Paracoccus denitrificans] Length = 485 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 35/132 (26%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR-YC 88 +GCNL C +C KG + + E R Sbjct: 110 TGCNL-----------ACTYCY-KEDLTTPAKGQKMGFETAKASFELLLKQAHARDRVNV 157 Query: 89 VLTGGEPLLQVDVPLIQAL--------NKRGFEI--AVETNGTIEPPQGIDW-------I 131 V GGEPL ++PLI+ L + G + ++ TN T+ P+ +DW + Sbjct: 158 VFFGGEPL--SNMPLIRELVAYARPRAAELGKAVDFSLTTNATLLTPELVDWFDAHRFAL 215 Query: 132 CVS---PKAGCD 140 VS PKA D Sbjct: 216 TVSMDGPKALHD 227 >gi|119384441|ref|YP_915497.1| radical SAM domain-containing protein [Paracoccus denitrificans PD1222] gi|119374208|gb|ABL69801.1| Radical SAM domain protein [Paracoccus denitrificans PD1222] Length = 485 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 35/132 (26%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR-YC 88 +GCNL C +C KG + + E R Sbjct: 110 TGCNL-----------ACTYCY-KEDLTTPAKGQKMGFETAKASFELLLKQAHARDRVNV 157 Query: 89 VLTGGEPLLQVDVPLIQAL--------NKRGFEI--AVETNGTIEPPQGIDW-------I 131 V GGEPL ++PLI+ L + G + ++ TN T+ P+ +DW + Sbjct: 158 VFFGGEPL--SNMPLIRELVAYARPRAAELGKAVDFSLTTNATLLTPELVDWFDAHRFAL 215 Query: 132 CVS---PKAGCD 140 VS PKA D Sbjct: 216 TVSMDGPKALHD 227 >gi|296387013|ref|ZP_06876512.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa PAb1] Length = 111 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 16/103 (15%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 GR A + R + C+ C + G ++ I++ Sbjct: 23 GRRA--------PVVIWNLLRRCNLTCKHCYS--TSTDSDFRGELETAEILRGIDDLRAA 72 Query: 81 GEKEGRYCVLTGGEPLLQVDVPLIQALNKR--GFEIAVETNGT 121 G R +L+GGEPL+ D+ I A + R G +A+ +NGT Sbjct: 73 G---VRVLILSGGEPLMHPDLFEIAA-HARQAGMFVALSSNGT 111 >gi|86610224|ref|YP_478986.1| molybdenum cofactor biosynthesis protein MoaA [Synechococcus sp. JA-2-3B'a(2-13)] gi|123724410|sp|Q2JI46|MOAA_SYNJB RecName: Full=Molybdenum cofactor biosynthesis protein A gi|86558766|gb|ABD03723.1| molybdenum cofactor biosynthesis protein MoaA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 325 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 8/93 (8%) Query: 33 NLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 N DR + +C++C D + R +++ L+ E ++ + L Sbjct: 5 NYLRISLIDRCNFRCQYCMPDEAELTWL-QAPERLTDEEILTLVREVFLPLGIDCFR--L 61 Query: 91 TGGEPLLQVDVP-LIQALNKR-GFE-IAVETNG 120 TGGEPLL+ + LI+AL G +A+ TNG Sbjct: 62 TGGEPLLRPGLEHLIRALCSLPGVRDVALTTNG 94 >gi|86605193|ref|YP_473956.1| pyruvate formate-lyase activating enzyme [Synechococcus sp. JA-3-3Ab] gi|86553735|gb|ABC98693.1| pyruvate formate-lyase activating enzyme [Synechococcus sp. JA-3-3Ab] Length = 250 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 23/101 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC L +C +C D G VD L I+ Sbjct: 33 IF--LQGCPL-----------RCLYCHNPD----CRDPNAGQVVTVDSLMAEIQRCRNYY 75 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 K G +GGEPL+Q + + + ++ A++T+G Sbjct: 76 LKGGG-VTASGGEPLMQPNFVAEIFRRCHELDLHTALDTSG 115 >gi|21227839|ref|NP_633761.1| Heme biosynthesis protein [Methanosarcina mazei Go1] gi|20906251|gb|AAM31433.1| Heme biosynthesis protein [Methanosarcina mazei Go1] Length = 349 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 17/99 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 +GCNL CR G ++ I++ G+ Sbjct: 16 TAGCNLNC--------VHCRG-----ASTSSVPEGELTTEEAKHFIDDVVELGK---PIL 59 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 +L+GGEPL + DV + + G + + TNGT+ P+ Sbjct: 60 ILSGGEPLTRTDVFEIARYGTDAGLRVVLATNGTLLTPE 98 >gi|320534425|ref|ZP_08034907.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces sp. oral taxon 171 str. F0337] gi|320133372|gb|EFW25838.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces sp. oral taxon 171 str. F0337] Length = 291 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 22/104 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF +GC L +C +C DT F+ G +L + Sbjct: 70 RMTVF--LNGCPL-----------RCLYCHNPDT-FLMKDGEP---VETSELLRRMRRYR 112 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG 120 L+GGE L+Q L+ K G ++T+G Sbjct: 113 GVFRASKGGITLSGGEVLMQPAFAGKLLAGAKKMGIHTCIDTSG 156 >gi|193063928|ref|ZP_03045014.1| glycyl-radical enzyme activating protein family [Escherichia coli E22] gi|192929393|gb|EDV83001.1| glycyl-radical enzyme activating protein family [Escherichia coli E22] Length = 291 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 65/177 (36%), Gaps = 35/177 (19%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50 IF +L GEG VF F GC L W + R A+C C Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G ++D L + + I + L+GGE L+Q + Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIF-FRTSGGVTLSGGEVLMQAEFATRF 137 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 +Q L G A+ET G + + + + DLKI + +K+ P+V Sbjct: 138 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 194 >gi|251780075|ref|ZP_04822995.1| glycyl-radical enzyme activating family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084390|gb|EES50280.1| glycyl-radical enzyme activating family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 310 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 10/96 (10%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119 G +V ++ D + + + L+GGEPLLQ + L ++ + G +ET Sbjct: 110 GKEMSVKEVLDELNKDSSQFRRSNGGVTLSGGEPLLQHEFALEILKGCKRIGIHTTIETT 169 Query: 120 GTI--EPPQGID-WICVSPKAGCDLKIKGGQELKLV 152 G + E + I W+ + L IK E K + Sbjct: 170 GYVKKEIFKKIAPWVDL-----VLLDIKTLNEDKHI 200 >gi|221198572|ref|ZP_03571617.1| molybdenum cofactor biosynthesis protein A [Burkholderia multivorans CGD2M] gi|221207801|ref|ZP_03580808.1| molybdenum cofactor biosynthesis protein A [Burkholderia multivorans CGD2] gi|221172298|gb|EEE04738.1| molybdenum cofactor biosynthesis protein A [Burkholderia multivorans CGD2] gi|221181023|gb|EEE13425.1| molybdenum cofactor biosynthesis protein A [Burkholderia multivorans CGD2M] Length = 367 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 24/145 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN G R +D+ + R + QL + G ++ R +T Sbjct: 45 CNFRCGYCMPREIFG-----SDYAFM--PPADRLSFAQLERIARAFVSLGVEKIR---IT 94 Query: 92 GGEPLLQVDVP-LIQAL------NKRGFEIAVETNGTIEP-------PQGIDWICVSPKA 137 GGEPLL+ + LI+ L + R E+A+ TNG + G+ + VS A Sbjct: 95 GGEPLLRRHLETLIERLAALTTVHGRPVELALTTNGALLAAKARTLRDAGLARVTVSLDA 154 Query: 138 GCDLKIKGGQELKLVFPQVNVSPEN 162 D + + + +V E Sbjct: 155 LDDAVFRRMSDADVPVSRVLAGIEA 179 >gi|167033480|ref|YP_001668711.1| radical SAM domain-containing protein [Pseudomonas putida GB-1] gi|166859968|gb|ABY98375.1| Radical SAM domain protein [Pseudomonas putida GB-1] Length = 476 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 31/116 (26%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GCNL C +C D D + + G + + +E E R Sbjct: 110 TGCNL-----------SCTYCYKEDLD----KPSAGKKMSTATAEASVEMLLKESPNEER 154 Query: 87 Y-CVLTGGEPLLQVDVPLIQ--------ALNKRGFEIA--VETNGTIEPPQGIDWI 131 Y V GGEPL + PLI+ + G ++ + TN T+ + IDW+ Sbjct: 155 YSVVFFGGEPL--SNRPLIEHMVAYCERRFAEAGKQVEFIMTTNATLLTEEIIDWL 208 >gi|325981399|ref|YP_004293801.1| hopanoid biosynthesis associated radical SAM protein HpnH [Nitrosomonas sp. AL212] gi|325530918|gb|ADZ25639.1| hopanoid biosynthesis associated radical SAM protein HpnH [Nitrosomonas sp. AL212] Length = 372 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C + R + ++ ++E + + Sbjct: 38 CNLAC--------AGCG----KIAHPEDVLDQRLSYEECMQAVDE------CDAPMVSIP 79 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPLL ++P ++ + +R + + TN + + ID SP + + G QE Sbjct: 80 GGEPLLHKEMPQIVAGIIQRKKYVYLCTN-ALLLKKRIDDYTPSPYLTFSIHLDGMQE 136 >gi|194333949|ref|YP_002015809.1| radical SAM domain-containing protein [Prosthecochloris aestuarii DSM 271] gi|194311767|gb|ACF46162.1| Radical SAM domain protein [Prosthecochloris aestuarii DSM 271] Length = 453 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR+C + + +LI+ ITG L Sbjct: 137 CNL-----------SCRYC--FYNAGHTDTPDVLKTQDILNLIDR--ITGSTVSNMVFL- 180 Query: 92 GGEPLLQVDVPLI-QALNKRGFEIAVETNGTI 122 GGEPLL D+ LI + RG + + TNGT+ Sbjct: 181 GGEPLLHDDIALIGRYALDRGIKSQLVTNGTL 212 >gi|224012631|ref|XP_002294968.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|224013938|ref|XP_002296633.1| pyruvate formate-lyase [Thalassiosira pseudonana CCMP1335] gi|220968985|gb|EED87329.1| pyruvate formate-lyase [Thalassiosira pseudonana CCMP1335] gi|220969407|gb|EED87748.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 231 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 69/192 (35%), Gaps = 31/192 (16%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64 E F + G G VF GC S +C +C +T + + Sbjct: 9 ETFTSNDGPGIRT---LVF--LQGC-----------SKRCMYCSNPETQCIVDPFSCPEV 52 Query: 65 Y-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGT 121 + +++A++++ +GGEPLLQ + + + G V+T+G Sbjct: 53 AVSDEEVANVLKRYEHFLRPNNGGITFSGGEPLLQPNFVGSVFKKAKSIGLTTCVDTSGH 112 Query: 122 IEP------PQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVNVSPENYIGFDFERFSLQ 174 P D++ + K G D+K+ + Q Y+ +++ L Sbjct: 113 GNPAIWNKCLPHTDYVMLCLK-GMDMKLASFISGVSESNNQRAREFAKYVRDNYKNIKLS 171 Query: 175 PMDGPFLEENTN 186 + L++ T+ Sbjct: 172 -IRWVLLKDMTD 182 >gi|281357881|ref|ZP_06244366.1| glycyl-radical enzyme activating protein family [Victivallis vadensis ATCC BAA-548] gi|281315539|gb|EFA99567.1| glycyl-radical enzyme activating protein family [Victivallis vadensis ATCC BAA-548] Length = 300 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 6/96 (6%) Query: 31 GCNLWSGREQDRLSAQCRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGR 86 GC+ C C + G +V+++ + + + + G Sbjct: 68 GCHKIEQGRHVFNREFCVGCGKCVKHCLSDALELCGQLRSVEEVISEVLKDKLFYDNSGG 127 Query: 87 YCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 L+GGEP+ Q D L++ + G + +ET G Sbjct: 128 GITLSGGEPMAQFDFTQELLKRAKEAGLHVCLETCG 163 >gi|170743008|ref|YP_001771663.1| radical SAM domain-containing protein [Methylobacterium sp. 4-46] gi|168197282|gb|ACA19229.1| Radical SAM domain protein [Methylobacterium sp. 4-46] Length = 351 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 45/130 (34%), Gaps = 30/130 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + D ++++ VL Sbjct: 40 CNLL-----------CETC--PRTFETLEPPADMSWDLFTRIVDQVPGIAR-----VVLH 81 Query: 92 G-GEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 G GEP+L D+P +I+ L RG + TNGT+ PK DL G EL Sbjct: 82 GVGEPMLVDDLPRMIRHLKARGTYVLFNTNGTLMQ----------PKRFRDLIETGLDEL 131 Query: 150 KLVFPQVNVS 159 ++ + + Sbjct: 132 RVSLDAADRA 141 >gi|317010985|gb|ADU84732.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori SouthAfrica7] Length = 321 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 10/80 (12%) Query: 46 QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102 +C++C T G +D + + ++ G K+ R +TGGEPLL+ Sbjct: 24 RCQYCMPATPLNFFDGE--ELLPLDNVLEFLKIAIDEGIKKIR---ITGGEPLLRKGLDE 78 Query: 103 LIQALNKRGFEIA--VETNG 120 I L+ E+A + TNG Sbjct: 79 FIARLHAYNKEVALVLSTNG 98 >gi|253568132|ref|ZP_04845543.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 1_1_6] gi|251842205|gb|EES70285.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 1_1_6] Length = 208 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 17/106 (16%) Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI 74 GEG F GC L +C++C Y+ QL + + Sbjct: 18 GEGVTTLVA-----FHGCPL-----------RCKYCLNPQSLHSEDIWKHYDCGQLYEEV 61 Query: 75 EEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119 ++ + GGEP LQ D + + L + ++++VET+ Sbjct: 62 KQDELYFLATHGGITFGGGEPCLQSDFIDEFRQLCGQEWQLSVETS 107 >gi|167768525|ref|ZP_02440578.1| hypothetical protein CLOSS21_03084 [Clostridium sp. SS2/1] gi|167710049|gb|EDS20628.1| hypothetical protein CLOSS21_03084 [Clostridium sp. SS2/1] Length = 368 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 16/93 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90 CNL CD +V + + + L + I + + +L Sbjct: 35 CNLN--------------CDMCYVHLSKQEMQSQGRLRSLDEWISLAKQMKDAGTLFLLL 80 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 TGGEPLL L L G + + TNGT+ Sbjct: 81 TGGEPLLFPQFKELYCVLKDMGMILTLNTNGTL 113 >gi|322380493|ref|ZP_08054683.1| molybdenum cofactor biosynthesis protein A [Helicobacter suis HS5] gi|321147073|gb|EFX41783.1| molybdenum cofactor biosynthesis protein A [Helicobacter suis HS5] Length = 350 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 22/145 (15%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 +C++C + T ++ ++L ++E + ++ R +TGGEPL++ D+ Sbjct: 52 RCQYC------MPTTPMDFFDREELLPLDKMLEFLKVAIDEGIRKIRITGGEPLIRKDLA 105 Query: 103 -LIQALNKRGFEIA--VETNGTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQEL 149 I ++ +++ + TNG + D + V S KA KI L Sbjct: 106 SFIAKIHAYNPQVSLGLTTNGFLLKAHARDLKEAGLERVNVSLDSLKAERVAKISQKDGL 165 Query: 150 KLVFPQVNVSPENYIGFDFERFSLQ 174 K V +N + +G F LQ Sbjct: 166 KAVLEGINAALRMGLGLKFNMVVLQ 190 >gi|218778684|ref|YP_002430002.1| glycyl-radical enzyme activating protein family [Desulfatibacillum alkenivorans AK-01] gi|218760068|gb|ACL02534.1| Pyruvate formate lyase activating enzyme [Desulfatibacillum alkenivorans AK-01] Length = 305 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 46/155 (29%), Gaps = 47/155 (30%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQ-----------CRFCDT--------------DF-- 54 R VF F GC L + S + C CDT F Sbjct: 21 RSVVF--FKGCPLSCLWCHNPESKRRELEISYDPKDCVHCDTCMEICTEKALSPDNPFFI 78 Query: 55 ----------------VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 G G +D + + + G L+GGEP L Sbjct: 79 DRKKCTLCMQCVEACPSGALSRVGSVMEIDAIVRDVARDKPFFKTSGGGVTLSGGEPTLS 138 Query: 99 VDVP--LIQALNKRGFEIAVETNGTIEPPQGIDWI 131 +D L++A ++ + VET G +D + Sbjct: 139 MDFLSRLVRAFREQEIHVLVETCGMFRLEDFLDKV 173 >gi|223038453|ref|ZP_03608747.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Campylobacter rectus RM3267] gi|222880310|gb|EEF15397.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Campylobacter rectus RM3267] Length = 228 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 28/129 (21%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 F+GCN+ +C +C + T G+ + + ++++ Sbjct: 29 FAGCNM-----------RCAYC---YNVPIVTGAGQISCAEFIKFLDKRKGKLSG----V 70 Query: 89 VLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGCD 140 V +GGE L +PL + RGF + V+TNG+ G ID+I + KA + Sbjct: 71 VFSGGECTLSPAFLPLASEVKSRGFLLKVDTNGSNLTIIGQAISLNLIDYIALDFKATKE 130 Query: 141 --LKIKGGQ 147 LK+ G Sbjct: 131 KFLKVSGSN 139 >gi|145591136|ref|YP_001153138.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM 13514] gi|145282904|gb|ABP50486.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 331 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 5/91 (5%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N++ + +C +C + GR+ L + E+ + +Y L G Sbjct: 5 NVFQVGVSTTCNGRCVYC--PLTIYRDKWVGRFMEFSLFQRVVEEGVGAGV--KYVHLQG 60 Query: 93 -GEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 GEPLL + L +R F + TNG + Sbjct: 61 WGEPLLHPQFLEMLMLARRHFSVGFTTNGVL 91 >gi|34498973|ref|NP_903188.1| molybdenum cofactor biosynthesis protein A [Chromobacterium violaceum ATCC 12472] gi|34104822|gb|AAQ61179.1| molybdenum cofactor biosynthesis protein A [Chromobacterium violaceum ATCC 12472] Length = 324 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C D++ ++ G + R LTGGEPLL+ + Sbjct: 19 DRCDLRCSYCLPKGFKHFEEPENWLTFDEIERVVAAFARLGTRRVR---LTGGEPLLRRN 75 Query: 101 VP-LIQALNKR-GF-EIAVETNGT 121 +P L L+ G ++++ TNGT Sbjct: 76 LPQLAARLSALPGLDDLSLTTNGT 99 >gi|95931056|ref|ZP_01313783.1| Ribonucleoside-triphosphate reductase, anaerobic-like [Desulfuromonas acetoxidans DSM 684] gi|95132865|gb|EAT14537.1| Ribonucleoside-triphosphate reductase, anaerobic-like [Desulfuromonas acetoxidans DSM 684] Length = 231 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 23/119 (19%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 GCNL C FC + + V+ L D ++++ + V Sbjct: 25 GGCNL-----------SCGFCHNPTLIDDFDQYPDMPVEALLDALQQRLGFIDG----VV 69 Query: 90 LTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIEPP-------QGIDWICVSPKAGCD 140 ++GGEP L + + + + G + ++TNG Q +D++ + K + Sbjct: 70 ISGGEPTLAPTLSSTLSQIKQMGLAVKLDTNGLRPDVVARLMEQQLLDYVALDVKTSPE 128 >gi|309776339|ref|ZP_07671327.1| pyruvate formate-lyase 1-activating enzyme [Erysipelotrichaceae bacterium 3_1_53] gi|308915935|gb|EFP61687.1| pyruvate formate-lyase 1-activating enzyme [Erysipelotrichaceae bacterium 3_1_53] Length = 231 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 27/118 (22%) Query: 8 EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66 E F ++ G G +F GC + +C++C K G + Sbjct: 11 ETFGSVDGPGVRFV----IF--LKGC-----------ALRCQYC----HNPDTWKCGEPD 49 Query: 67 VDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 D L+++ G+ ++GGEPLLQ+D + L Q K G ++T G Sbjct: 50 TDS-EQLLKKALRYRSYWGKNGGITVSGGEPLLQIDFLLDLFQQAKKEGIHTVIDTAG 106 >gi|294338901|emb|CAZ87238.1| Coenzyme PQQ synthesis protein E (Pyrroloquinoline quinone biosynthesis protein E) (Coenzyme PQQ synthesis protein III) [Thiomonas sp. 3As] Length = 372 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 9/91 (9%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGG-RYNVDQLADLIEEQWITGEKEGRYCVL 90 LW E R C FC + + + + D ++++ G + C Sbjct: 8 PLWILAELTYRCPLHCAFC---YNPVDFARHDQEISTDDWLRVLQQGRALGAVQ---CGF 61 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPLL+ D+ L+ ++ G+ + T+G Sbjct: 62 SGGEPLLRDDLEVLVAEAHRLGYYTNLLTSG 92 >gi|29346465|ref|NP_809968.1| pyruvate formate-lyase activating enzyme [Bacteroides thetaiotaomicron VPI-5482] gi|298387757|ref|ZP_06997308.1| pyruvate formate-lyase-activating enzyme [Bacteroides sp. 1_1_14] gi|29338361|gb|AAO76162.1| pyruvate formate-lyase activating enzyme [Bacteroides thetaiotaomicron VPI-5482] gi|298259613|gb|EFI02486.1| pyruvate formate-lyase-activating enzyme [Bacteroides sp. 1_1_14] Length = 208 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 17/106 (16%) Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI 74 GEG F GC L +C++C Y+ +QL + + Sbjct: 18 GEGVTTLVA-----FHGCPL-----------RCKYCLNPQSLHSEGIWKNYDCEQLYEEV 61 Query: 75 EEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119 + + GGEP LQ D + + L + ++++VET+ Sbjct: 62 RQDELYFLATNGGITFGGGEPCLQSDFIYEFRQLCGQEWQLSVETS 107 >gi|160942352|ref|ZP_02089660.1| hypothetical protein CLOBOL_07237 [Clostridium bolteae ATCC BAA-613] gi|158434716|gb|EDP12483.1| hypothetical protein CLOBOL_07237 [Clostridium bolteae ATCC BAA-613] Length = 305 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 KG ++ Q+ +++ T + G L+GGEPL+Q + L+QA +G+ A+ET Sbjct: 107 KGKTMSIQQVIRELKKDATTYRRSGGGITLSGGEPLMQYEFASELLQACKGQGWNTAIET 166 Query: 119 NG 120 G Sbjct: 167 TG 168 >gi|312116276|ref|YP_004013872.1| glycyl-radical enzyme activating protein family [Rhodomicrobium vannielii ATCC 17100] gi|311221405|gb|ADP72773.1| glycyl-radical enzyme activating protein family [Rhodomicrobium vannielii ATCC 17100] Length = 304 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 9/94 (9%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALN-KRGFEIAVET 118 G R V++++ + + W + G L+GGE L Q L+ AL+ GF V+T Sbjct: 108 GRRMTVEEVSTEVRQHWRIFMQSGGGVTLSGGEVLAQPAFAGALLSALHDDLGFHTCVDT 167 Query: 119 NGTIEPP------QGIDWICVSPKAGCDLKIKGG 146 G + ID I + K D + + Sbjct: 168 TGFLPWENFERLLPAIDLILLDLKHMDDSRHREA 201 >gi|323136947|ref|ZP_08072027.1| hopanoid biosynthesis associated radical SAM protein HpnH [Methylocystis sp. ATCC 49242] gi|322397708|gb|EFY00230.1| hopanoid biosynthesis associated radical SAM protein HpnH [Methylocystis sp. ATCC 49242] Length = 383 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 49/142 (34%), Gaps = 23/142 (16%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R +V+ ++E V+ Sbjct: 38 CNL-----------ACSGCGKIDY--PDHILNKRLSVEDALASVDECG------APVVVI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEPLL D+P +++ + RG V TN + + ID SP + + G +E+ Sbjct: 79 AGGEPLLHKDLPQIVEGVIARGKFAIVCTN-ALLLAKKIDQFKPSPYFTWSIHLDGDKEM 137 Query: 150 -KLVFPQVNVSPENYIGFDFER 170 Q V + Sbjct: 138 HDHAVSQEGVYERAIEAIKLAK 159 >gi|308062089|gb|ADO03977.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori Cuz20] Length = 321 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 24/165 (14%) Query: 46 QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102 +C++C T +D + + ++ G K+ R +TGGEPLL+ Sbjct: 24 RCQYCMPTTPLNFFDDE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDE 78 Query: 103 LIQALNKRGFEIA--VETNGTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQELK 150 I L+ E+A + TNG + D + V S K+ LKI LK Sbjct: 79 FIAKLHAYNKEVALVLSTNGFLLKKMAKDLKNAGLSRVNVSLDSLKSDRVLKISQKDALK 138 Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 V S + + + ++ M +E L + Y Sbjct: 139 NTLEGVEESLKVGLKL---KLNMVVMKSVNDDEILEL-LEYAKNR 179 >gi|295110857|emb|CBL24810.1| Pyruvate-formate lyase-activating enzyme [Ruminococcus obeum A2-162] Length = 245 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 28/118 (23%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64 E F ++ G G R +F SGC + +C+FC DT + +G + Sbjct: 13 ESFGSVDGPGV---RYVIF--LSGC-----------AMRCQFCHNPDT----WKMGEGQQ 52 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETN 119 Y QL +G ++GGEPLLQ+D LI+ G ++T+ Sbjct: 53 YTPSQLLKQALRYKNYWGNKGG-ITVSGGEPLLQIDF-LIEFFRMAKAEGVHTTLDTS 108 >gi|170290386|ref|YP_001737202.1| radical SAM domain-containing protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170174466|gb|ACB07519.1| Radical SAM domain protein [Candidatus Korarchaeum cryptofilum OPF8] Length = 349 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 12/80 (15%) Query: 46 QCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP- 102 +C C + +N ++ D +EE ++GGEPLL+ P Sbjct: 44 RCSHC---YQSEWRPIRELSDFNELRIVDQLEELG------KPLIFISGGEPLLKSQTPQ 94 Query: 103 LIQALNKRGFEIAVETNGTI 122 LI+ L R F + + TNG++ Sbjct: 95 LIRELKARDFRVILSTNGSL 114 >gi|114566232|ref|YP_753386.1| radical SAM domain-containing protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337167|gb|ABI68015.1| radical SAM domain protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 333 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 4/79 (5%) Query: 49 FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL 107 FCD + + +Q LIEE G R + +GGEPL++ D+ L Q Sbjct: 14 FCDHCYRDAGARLEDELSTEQAKKLIEEIKKAG---FRIMIFSGGEPLMRPDIFELGQYA 70 Query: 108 NKRGFEIAVETNGTIEPPQ 126 ++G + + TNG++ P+ Sbjct: 71 TRQGLRVVMGTNGSLISPE 89 >gi|119385711|ref|YP_916766.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Paracoccus denitrificans PD1222] gi|119376306|gb|ABL71070.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Paracoccus denitrificans PD1222] Length = 208 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 38/125 (30%), Gaps = 28/125 (22%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC C +C + +G D E Sbjct: 22 VATLF--LQGCP-----------WDCPYCHNPHLIPPEAEGT-------LDWQEVLGFLA 61 Query: 82 EKEGRY--CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICV 133 + G V +GGEP LQ +P ++A+ GF + T G DW+ Sbjct: 62 GRRGLLDGVVFSGGEPTLQRGLPEALRAVRALGFRTGLHTAGPYPARLAAVLPLCDWVGF 121 Query: 134 SPKAG 138 KA Sbjct: 122 DVKAP 126 >gi|289661642|ref|ZP_06483223.1| molybdenum cofactor biosynthesis protein A [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 343 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 16/102 (15%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 +C +C D R + DQL L+ G + R LTGGEPLL+ D+P Sbjct: 36 RCGYCMPADRVPDDYGFDSQQRLSFDQLETLVRAFVSVGVTKVR---LTGGEPLLRRDLP 92 Query: 103 -LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVS 134 LI L+ G E +A+ TNGT+ Q + I VS Sbjct: 93 SLIARLSAIEGIEDLALTTNGTLLARQAVALRQAGLRRITVS 134 >gi|160946140|ref|ZP_02093351.1| hypothetical protein PEPMIC_00102 [Parvimonas micra ATCC 33270] gi|158447663|gb|EDP24658.1| hypothetical protein PEPMIC_00102 [Parvimonas micra ATCC 33270] Length = 281 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 41/164 (25%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQ------------------------------CRFCDTD 53 ++F GCN + + + C CD Sbjct: 24 SIF--LQGCNFNCFYCHNPETIRHCINCMECIPSCPTKSLKNVNGKIVWNDKTCINCDEC 81 Query: 54 FVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALN 108 + + + V++ + I++ R ++GGE LQ L + Sbjct: 82 IRVCKHLSSPKIYNWTVEETVERIKKNMPF----IRGITVSGGECTLQHTFLTSLFTEVR 137 Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152 K G V+TNG I + D++ VS D+K +E + Sbjct: 138 KLGLTCFVDTNGGIPLKRLPDFVEVSDAFMLDIKAFDNEEHLFI 181 >gi|312134714|ref|YP_004002052.1| Radical SAM domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311774765|gb|ADQ04252.1| Radical SAM domain protein [Caldicellulosiruptor owensensis OL] Length = 314 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 8/115 (6%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + C +C T + + + + + ++ +I G ++ R +TGGEP L+ D Sbjct: 24 DRCNFFCMYCRTKDLCYE--RAEQLSKGEIFRIISAFKKLGIQKLR---ITGGEPFLRDD 78 Query: 101 V-PLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153 + +I+ + G E I + TNG ++ + I + SP ++ + + K F Sbjct: 79 IFEIIEFAHSIGIENINITTNGWLD-TEKIKKVIKSPLKSVNISLDTLDKEKYRF 132 >gi|124266885|ref|YP_001020889.1| putative ribonucleotide reductase activating transmembrane protein [Methylibium petroleiphilum PM1] gi|124259660|gb|ABM94654.1| putative ribonucleotide reductase activating transmembrane protein [Methylibium petroleiphilum PM1] Length = 223 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 39/123 (31%), Gaps = 27/123 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF GC + +C +C GR + E + Sbjct: 35 VFV--QGC-----------AWRCVYC------HNPQLQGRQPAPGIPHWAEVHDWLRTRR 75 Query: 85 GRY--CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPK 136 G V +GGEP L +P + A+ GF + T G +DW+ + K Sbjct: 76 GLLDAVVFSGGEPTLDPALPAALDAVRALGFRTGLHTAGMAPRRLQAVLPSLDWVGLDIK 135 Query: 137 AGC 139 A Sbjct: 136 APL 138 >gi|261349664|ref|ZP_05975081.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanobrevibacter smithii DSM 2374] gi|288861622|gb|EFC93920.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanobrevibacter smithii DSM 2374] Length = 234 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 18/126 (14%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N+ + CR+C + + +++ I++ V++G Sbjct: 16 NMSLVIFMSKCPLACRYC---HNAELLDDNTQLSFEEIKKEIDD----AADFIDAVVISG 68 Query: 93 GEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGCDL-- 141 GEPL+Q D + +++ ++K G + ++T+G +D+I + KA + Sbjct: 69 GEPLVQSDAVIEILKYVHKLGLKTKLDTSGIYPDKLENILKLNILDFISLDVKAPFEKYR 128 Query: 142 KIKGGQ 147 K+ G Sbjct: 129 KVTGSN 134 >gi|222445792|ref|ZP_03608307.1| hypothetical protein METSMIALI_01435 [Methanobrevibacter smithii DSM 2375] gi|222435357|gb|EEE42522.1| hypothetical protein METSMIALI_01435 [Methanobrevibacter smithii DSM 2375] Length = 234 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 18/126 (14%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N+ + CR+C + + +++ I++ V++G Sbjct: 16 NMSLVIFMSKCPLACRYC---HNAELLDDNTQLSFEEIKKEIDD----AADFIDAVVISG 68 Query: 93 GEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGCDL-- 141 GEPL+Q D + +++ ++K G + ++T+G +D+I + KA + Sbjct: 69 GEPLVQSDAVIEILKYVHKLGLKTKLDTSGIYPDKLENILKLNILDFISLDVKAPFEKYR 128 Query: 142 KIKGGQ 147 K+ G Sbjct: 129 KVTGSN 134 >gi|317009222|gb|ADU79802.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori India7] Length = 321 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 26/166 (15%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLLQV-DV 101 +C++C + T ++ ++L +++E I ++ + +TGGEPLL+ Sbjct: 24 RCQYC------MPATPLDFFDDEELLPLDNVLEFLKIAIDEGVKKIRITGGEPLLRKGLD 77 Query: 102 PLIQALNKRGFEIA--VETNGTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQEL 149 I L+ E+A + TNG + D + V S K+ LKI L Sbjct: 78 EFIAKLHAYNKEVALVLSTNGFLLKKMAKDLKNAGLSRVNVSLDSLKSDRVLKISQKDAL 137 Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 K + S + + + +E L + Y Sbjct: 138 KNTLEGIEESLKVGLKLKLNTVV---IKSVNDDEILEL-LEYAKNR 179 >gi|238894042|ref|YP_002918776.1| pyruvate formate lyase II activase [Klebsiella pneumoniae NTUH-K2044] gi|238546358|dbj|BAH62709.1| putative pyruvate formate lyase activating enzyme [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 291 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 45/137 (32%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS--------------AQCRF 49 IF +L G+G VF F GC + S +C Sbjct: 23 IFNLQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIQTLRRESKCLRCTR 77 Query: 50 CDTDFV----GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 C D G G +D L + + + G L+GGE L+Q Sbjct: 78 CQQDVAECPSGAWEQIGRDVTLDNLLQEVLKDEVFFRASGGGVTLSGGEVLMQAGFAARF 137 Query: 104 IQALNKRGFEIAVETNG 120 +Q L + G A+ET G Sbjct: 138 LQRLRQWGIRTAIETAG 154 >gi|218782945|ref|YP_002434263.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01] gi|218764329|gb|ACL06795.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01] Length = 334 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 23/103 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C G + DQ + I G + + Sbjct: 34 CNL-----------RCAYC-----GFPDLPSDEMDADQWLEAIHAFLQAGTLRMGF---S 74 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEPPQG--IDWI 131 GGEPLL Q L+QA + + I + TNG + P + + W+ Sbjct: 75 GGEPLLRQDLGRLLQAAHGKAL-ITLNTNGLLLPERKGLLKWV 116 >gi|303231350|ref|ZP_07318084.1| molybdenum cofactor biosynthesis protein A [Veillonella atypica ACS-049-V-Sch6] gi|302513946|gb|EFL55954.1| molybdenum cofactor biosynthesis protein A [Veillonella atypica ACS-049-V-Sch6] Length = 321 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 7/84 (8%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105 C +C + T ++ + + + + + + LTGGEPLL + L+ Sbjct: 24 CPYC----RPAEITPQSQHQLLSVDEWMTILGAFHQVGVKAVRLTGGEPLLYPHIEELLA 79 Query: 106 ALNKRGFE--IAVETNGTIEPPQG 127 + + G+ I++ TNG++ P+ Sbjct: 80 RIKQTGWFEDISMTTNGSLLAPRA 103 >gi|206577451|ref|YP_002239375.1| glycyl-radical enzyme activating protein family [Klebsiella pneumoniae 342] gi|288936226|ref|YP_003440285.1| glycyl-radical enzyme activating protein family [Klebsiella variicola At-22] gi|290510719|ref|ZP_06550089.1| pyruvate formate-lyase 2-activating enzyme [Klebsiella sp. 1_1_55] gi|206566509|gb|ACI08285.1| glycyl-radical enzyme activating protein family [Klebsiella pneumoniae 342] gi|288890935|gb|ADC59253.1| glycyl-radical enzyme activating protein family [Klebsiella variicola At-22] gi|289777435|gb|EFD85433.1| pyruvate formate-lyase 2-activating enzyme [Klebsiella sp. 1_1_55] Length = 291 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 45/137 (32%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS--------------AQCRF 49 IF +L G+G VF F GC + S +C Sbjct: 23 IFNLQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIQTLRRESKCLRCTR 77 Query: 50 CDTDFV----GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 C D G G +D L + + + G L+GGE L+Q Sbjct: 78 CQQDVAECPSGAWEQIGRDVTLDNLLQEVLKDEVFFRASGGGVTLSGGEVLMQAGFAARF 137 Query: 104 IQALNKRGFEIAVETNG 120 +Q L + G A+ET G Sbjct: 138 LQRLRQWGIRTAIETAG 154 >gi|194292778|ref|YP_002008685.1| nitrite reductase heme d1 biosynthesis protein [Cupriavidus taiwanensis LMG 19424] gi|193226682|emb|CAQ72633.1| nitrite reductase heme d1 biosynthesis protein [Cupriavidus taiwanensis LMG 19424] Length = 387 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 26/117 (22%) Query: 33 NLWSGREQDRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 + R + CR C DTDF G T A+ + E Sbjct: 26 PVVIWNLIRRCNLNCRHCYATSADTDFKGELDT----------AEALAVLGQLREARVPA 75 Query: 88 CVLTGGEPLLQVDVPLIQALNKR--GFEIAVETNGTI--------EPPQGIDWICVS 134 +L+GGEPLL+ D+ I A + R GF +++ +NGT+ G D++ VS Sbjct: 76 LILSGGEPLLRPDLYQI-AGHARALGFHLSLSSNGTLLDAGHAARLAAAGFDYVGVS 131 >gi|58580682|ref|YP_199698.1| molybdenum cofactor biosynthesis protein A [Xanthomonas oryzae pv. oryzae KACC10331] gi|188578341|ref|YP_001915270.1| molybdenum cofactor biosynthesis protein A [Xanthomonas oryzae pv. oryzae PXO99A] gi|58425276|gb|AAW74313.1| molybdenum cofactor biosynthesis protein A [Xanthomonas oryzae pv. oryzae KACC10331] gi|188522793|gb|ACD60738.1| molybdenum cofactor biosynthesis protein A [Xanthomonas oryzae pv. oryzae PXO99A] Length = 343 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 59/155 (38%), Gaps = 16/155 (10%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 +C +C D R + DQL L+ G + R LTGGEPLL+ D+P Sbjct: 36 RCGYCMPADRVPDDYGFDSRQRLSFDQLETLVRAFVSVGVTKVR---LTGGEPLLRRDLP 92 Query: 103 -LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVSPKAGCDLKIKGGQELKLV 152 LI L G E +A+ TNGT+ Q + I VS A + + Sbjct: 93 SLIARLTAIEGIEDLALTTNGTLLARQAVALRQAGLRRITVSMDALEPALFRRMNGDRGE 152 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL 187 +V F+R + + + E+ L Sbjct: 153 IARVLAGIAAAEQAGFQRLKINCVVQRGVNEDQVL 187 >gi|150387904|ref|YP_001317953.1| radical SAM domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149947766|gb|ABR46294.1| Radical SAM domain protein [Alkaliphilus metalliredigens QYMF] Length = 335 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%) Query: 44 SAQCR-FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101 + C +CD + N ++ LI+E + G + + +GGEPL++ D+ Sbjct: 8 TNHCNMYCDHCYRDSGVKGSSELNTEEGKALIDEIVLAG---FKIMIFSGGEPLMREDLF 64 Query: 102 PLIQALNKRGFEIAVETNGTIEPPQ 126 LI RG + TNGT P Sbjct: 65 ELIAYAKDRGLRPVLGTNGTFITPA 89 >gi|331085609|ref|ZP_08334693.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407496|gb|EGG86998.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Lachnospiraceae bacterium 9_1_43BFAA] Length = 176 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 19/88 (21%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 GC C+ C + G + D L +IEE + Sbjct: 31 QGCP-----------HHCQGCHNPETW-EFDGGTWWMTDDLVKVIEENPLAKG-----VT 73 Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIA 115 +GGEP Q + L L RG+E+A Sbjct: 74 FSGGEPFSQAEAFAELAGKLKNRGYEVA 101 >gi|307353809|ref|YP_003894860.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanoplanus petrolearius DSM 11571] gi|307157042|gb|ADN36422.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanoplanus petrolearius DSM 11571] Length = 252 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 48/142 (33%), Gaps = 34/142 (23%) Query: 21 GRV--AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 GR VF R GC + +C +C T +D++ D+I + Sbjct: 18 GRAVCTVFFR--GCPV-----------RCYYC---HNREIQTGEELREIDEIEDMIRQSR 61 Query: 79 ITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQG-------ID 129 + + +GGE +Q + L + K + V+TNG +D Sbjct: 62 LAISG----VIFSGGEATMQKEGLMELARRCRKMNLAVGVQTNGVFPDTLKEMIDEGLLD 117 Query: 130 WICVSPK---AGCDLKIKGGQE 148 + + K +K G E Sbjct: 118 LVHLDIKTRWEHYPRMLKVGDE 139 >gi|300691998|ref|YP_003752993.1| molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum PSI07] gi|299079058|emb|CBJ51720.1| Molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum PSI07] Length = 387 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 57/136 (41%), Gaps = 25/136 (18%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ ++ + + +++ + G ++ R LTGGE Sbjct: 66 DRCNFRCVYCMPKDVFDKDYRFLRHS--ELLSFEEIERIARLFIEHGVEKIR---LTGGE 120 Query: 95 PLLQVDV----PLIQALNKRG---FEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ D+ ++ L+ R ++ + TNG + G+ + VS A D Sbjct: 121 PLLRKDIERLVEMLARLHTRDGKPLDLTLTTNGALLARKAQSLKDAGLTRVTVSLDAIDD 180 Query: 141 LKIKGGQELKLVFPQV 156 + ++ +V Sbjct: 181 ATFRRMNDVDFAVGEV 196 >gi|322832184|ref|YP_004212211.1| pyruvate formate-lyase activating enzyme [Rahnella sp. Y9602] gi|321167385|gb|ADW73084.1| pyruvate formate-lyase activating enzyme [Rahnella sp. Y9602] Length = 265 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 57/181 (31%), Gaps = 38/181 (20%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G NVD L + Sbjct: 44 VF--FQGC-----------LMRCMYCHNRDT----WDTHGGKEINVDDLMKEVVTYRHFM 86 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKA 137 G +GGE +LQ + +A K G ++TNG ID + VS Sbjct: 87 NASGGGVTASGGEAILQAEFVRDWFRACQKEGINTCLDTNGFVRRYDPVIDELLDVSDLV 146 Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197 DLK Q V N+ DF R+ + N I Y P Sbjct: 147 MLDLKQMNDD-----IHQNLVGVSNHRTLDFARY--------LAKRNQRTWIRYVVV-PG 192 Query: 198 W 198 W Sbjct: 193 W 193 >gi|304408371|ref|ZP_07390018.1| Radical SAM domain protein [Paenibacillus curdlanolyticus YK9] gi|304342660|gb|EFM08507.1| Radical SAM domain protein [Paenibacillus curdlanolyticus YK9] Length = 380 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 9/90 (10%) Query: 40 QDRLSAQCRFC----DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 D + +C FC DT + + + + +++ L I++ + + +LTGG Sbjct: 32 SDICNYRCSFCHIWGDTGWALKEPQRVIREQLDIEVLKKFIDQ--VPKGRNPIGVILTGG 89 Query: 94 EPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 E +L L+ L + + V TNG++ Sbjct: 90 EVMLYKHFEELVTHLRSKRMNVYVNTNGSL 119 >gi|227327963|ref|ZP_03831987.1| putative pyruvate formate-lyase activating enzyme [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 316 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 3/79 (3%) Query: 46 QCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102 CR C+T G G V +L ++I + + G L+GGE LQ D V Sbjct: 97 GCRKCETVCLSGALDVIGQEMTVTELMEIIMQDYPFYVSSGGGVTLSGGEMSLQTDFAVE 156 Query: 103 LIQALNKRGFEIAVETNGT 121 L+ A + AVET GT Sbjct: 157 LLTACKRMMINTAVETQGT 175 >gi|71907723|ref|YP_285310.1| radical SAM family protein [Dechloromonas aromatica RCB] gi|71847344|gb|AAZ46840.1| Radical SAM [Dechloromonas aromatica RCB] Length = 264 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 21/97 (21%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 SGC + +C +C DT + GT +V LAD+ + + G Sbjct: 49 LSGCPM-----------RCLYCHNPDT-WHRQDGTLTPVEDV--LADIAGYRGFIRSQGG 94 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 L+GGEPL+Q +++ G A++T+G Sbjct: 95 --VTLSGGEPLVQPKFCKAILRGCKAMGLHTALDTSG 129 >gi|311895173|dbj|BAJ27581.1| hypothetical protein KSE_17570 [Kitasatospora setae KM-6054] Length = 341 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 38 CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLECG------APMVSIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + +++ L +R + + TN + + +D SP + I G +E Sbjct: 80 GGEPLMHPQIDEIVRQLVERRKYVFLCTN-ALLLRKKLDKFTPSPYFTFAVHIDGLEE 136 >gi|303248585|ref|ZP_07334841.1| glycyl-radical enzyme activating protein family [Desulfovibrio fructosovorans JJ] gi|302490026|gb|EFL49948.1| glycyl-radical enzyme activating protein family [Desulfovibrio fructosovorans JJ] Length = 320 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 33/107 (30%), Gaps = 13/107 (12%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCD----TDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 RF+ + C C T + G G ++ D + Sbjct: 88 IRFA-----ANGTVVIDREACDLCGECVATCYAGSMTIVGRYLTPGEVLDEVCRDAKFYT 142 Query: 83 KEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETNGTIEPPQ 126 G +GGEP LQ+D L L RG A+ET G Sbjct: 143 VSGGGVTFSGGEPTLQLDF-LRACLREAKARGLHTAIETCGHAPWTS 188 >gi|323526884|ref|YP_004229037.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. CCGE1001] gi|323383886|gb|ADX55977.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. CCGE1001] Length = 369 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 25/136 (18%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + + +++ L G ++ R LTGGE Sbjct: 45 DRCNFRCVYCMPRAVFDKDYAFLPHS--ALLSFEEIERLARLFVAHGVEKIR---LTGGE 99 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ ++ LI+ L++ R ++ + TNG++ G+ + VS A D Sbjct: 100 PLLRKNLEFLIERLSQLITPAGRPLDLTLTTNGSLLARKARSLKDAGLSRVTVSLDALDD 159 Query: 141 LKIKGGQELKLVFPQV 156 + + V Sbjct: 160 TLFRRMNDADFAVADV 175 >gi|239905241|ref|YP_002951980.1| hypothetical protein DMR_06030 [Desulfovibrio magneticus RS-1] gi|239795105|dbj|BAH74094.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 448 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 15/103 (14%) Query: 31 GCNLWSGREQDRLSAQCR-----------FCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G + C C F ++ +A + + Sbjct: 73 GCPYVCGLCPEHHQRTCTVVLEVTGRCNLGCPVCFADAGSASAPDPSLADIAARLVQARQ 132 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNG 120 ++GGEP ++ D+P ++ A GF + + TNG Sbjct: 133 QAGPANLQ--ISGGEPTMRADLPDIVAAAKAAGFPFVQLNTNG 173 >gi|225849867|ref|YP_002730101.1| heme d1 biosynthesis protein NirJ [Persephonella marina EX-H1] gi|225645943|gb|ACO04129.1| heme d1 biosynthesis protein NirJ [Persephonella marina EX-H1] Length = 362 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 20/106 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL+ C+ C + ++ G ++D++ I E + +L+ Sbjct: 33 CNLF-----------CQHC---YSAANLSRAGEPSIDEIRSQI---PYLKEAGVKVLILS 75 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI--CVS 134 GGEPL++ D+ + + GF + + TNG + + I+ I C S Sbjct: 76 GGEPLIREDIFDIANLFKENGFNVTLSTNGLLIDEKNIESIKECFS 121 >gi|170722117|ref|YP_001749805.1| radical SAM domain-containing protein [Pseudomonas putida W619] gi|169760120|gb|ACA73436.1| Radical SAM domain protein [Pseudomonas putida W619] Length = 476 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 41/135 (30%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GCNL C +C D D + + G + + +E E R Sbjct: 110 TGCNL-----------SCTYCYKEDLD----KPSAGKKMSTATAEASVEMLLKESPDEQR 154 Query: 87 Y-CVLTGGEPLLQVDVPLIQ--------ALNKRGFEIA--VETNGTIEPPQGIDW----- 130 Y V GGEPL + PLI+ + G ++ + TN T+ + +DW Sbjct: 155 YSVVFFGGEPL--SNRPLIEHMVAYCERRFAEAGKQVEFIMTTNATLLTEETVDWLNAHR 212 Query: 131 --ICVS---PKAGCD 140 + VS PK D Sbjct: 213 FGLSVSIDGPKTVHD 227 >gi|108563178|ref|YP_627494.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori HPAG1] gi|122980501|sp|Q1CTA2|MOAA_HELPH RecName: Full=Molybdenum cofactor biosynthesis protein A gi|107836951|gb|ABF84820.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori HPAG1] Length = 321 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 61/172 (35%), Gaps = 27/172 (15%) Query: 46 QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102 +C++C T +D + + ++ G K+ R +TGGEPLL+ Sbjct: 24 RCQYCMPATPLNFFDNE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDE 78 Query: 103 LIQALNKRGFEIA--VETNGTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQELK 150 I L+ E+A + TNG + D + V S K+ LKI LK Sbjct: 79 FIAKLHAYNKEVALVLSTNGFLLKKMAKDLKKAGLSRVNVSLDSLKSDRVLKISQKDALK 138 Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202 + S + + M +E +L + Y R+ + Sbjct: 139 NTLEGIEESLKVGLKLKLNTVV---MKSVNGDEILDL-LEYAKNR---RIQI 183 >gi|71908225|ref|YP_285812.1| GTP cyclohydrolase subunit MoaA [Dechloromonas aromatica RCB] gi|71847846|gb|AAZ47342.1| GTP cyclohydrolase subunit MoaA [Dechloromonas aromatica RCB] Length = 327 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 25/170 (14%) Query: 41 DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR +C +C +DF G + + + D++ L+ + R LTGGEPL++ Sbjct: 23 DRCDLRCAYCMPSDFSGYEEPEH-WLSFDEIERLV---GLFARFGLRRVRLTGGEPLMRK 78 Query: 100 DVP-LIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS-----PKAGCDLKIK 144 + L + + G E +++ TNGT G+D + VS P + I Sbjct: 79 GLAGLARRIKAIPGVEDLSLSTNGTQLRKHGQALRDAGVDRLNVSLDTLQPARFAE--IT 136 Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 L V ++ IGF + ++ + G +E + +C Q Sbjct: 137 RRDALADVL--AGLATAREIGFAPIKINMVWLAGVNDDE-LEAMVDFCRQ 183 >gi|261868599|ref|YP_003256521.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413931|gb|ACX83302.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter actinomycetemcomitans D11S-1] Length = 246 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 57/180 (31%), Gaps = 45/180 (25%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G V++L + Sbjct: 21 IRFILFLQGC-----------LMRCKYCHNRDT----WDLHGGKEITVEELMKEVVTYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 G +GGE +LQ + +A G ++TNG + + ID Sbjct: 66 FMNASGGGVTASGGEAILQAEFVRDWFRACKAEGIHTCLDTNGFVRHYDHVIDELIDV-- 123 Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC 192 DL + +EL Q + N +F + LQ + N + I Y Sbjct: 124 ------TDLVLLDLKELNDKVHQNLIGVPNKRTLEFAK-YLQ-------KRNQPVWIRYV 169 >gi|257783945|ref|YP_003179162.1| (Formate-C-acetyltransferase)-activating enzyme [Atopobium parvulum DSM 20469] gi|257472452|gb|ACV50571.1| (Formate-C-acetyltransferase)-activating enzyme [Atopobium parvulum DSM 20469] Length = 294 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 5 SIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSG------------------------- 37 + +I F + G G AVF GCN+ Sbjct: 21 PVNKIIPFSLVDGPGSRT---AVF--LQGCNIRCAYCHNPETQVECISCQACVKPCPAHA 75 Query: 38 -----REQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + ++ C CD Q + + + + ++ I+ R +G Sbjct: 76 LSMANGKVVWDNSICINCDNCIKVCQHKSTPKIELLSARE-VADRCISNMPFIRGITTSG 134 Query: 93 GEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 GE +L+ D L N G +++NGTI+ + D + +S D+K Sbjct: 135 GECMLRPDFLYELFTYCNAAGLSCLIDSNGTIDFTEYRDLLALSDGVMLDVK 186 >gi|251796732|ref|YP_003011463.1| radical SAM protein [Paenibacillus sp. JDR-2] gi|247544358|gb|ACT01377.1| Radical SAM domain protein [Paenibacillus sp. JDR-2] Length = 292 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C FC T+ G +++ + +++ + + Sbjct: 15 CNL-----------ACSFCPPTERA------KGFISIEDFTERLDQIKPFTDYIYFHLK- 56 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 57 --GEPLLHPKIDQLLDISHEKGFKVNITTNGTL 87 >gi|147677220|ref|YP_001211435.1| arylsulfatase regulator [Pelotomaculum thermopropionicum SI] gi|146273317|dbj|BAF59066.1| arylsulfatase regulator [Pelotomaculum thermopropionicum SI] Length = 420 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 44/125 (35%), Gaps = 28/125 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C F+ + GR + ++ L Sbjct: 83 CNL-----------ACEYC---FI-HDKSPAGRMTFATAKNAVDLLVERAAYPAVNITLI 127 Query: 92 GGEPLLQVDVPLIQ-----ALNKRGFEI-----AVETNGTIEPPQGIDWICVSPKAGCDL 141 GGEPLL + LI+ AL G +V TNGT+ + + S K G L Sbjct: 128 GGEPLL--EFELIKKIVPYALEAAGKRNLGVTWSVTTNGTLINEDILKFFA-SHKIGMLL 184 Query: 142 KIKGG 146 I GG Sbjct: 185 SIDGG 189 >gi|303229436|ref|ZP_07316226.1| molybdenum cofactor biosynthesis protein A [Veillonella atypica ACS-134-V-Col7a] gi|302515972|gb|EFL57924.1| molybdenum cofactor biosynthesis protein A [Veillonella atypica ACS-134-V-Col7a] Length = 321 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 7/84 (8%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105 C +C + T ++ + + + + + + LTGGEPLL + L+ Sbjct: 24 CPYC----RPAEITPQSQHQLLSVDEWMTILGAFHQVGVKAVRLTGGEPLLYPHIEELLA 79 Query: 106 ALNKRGFE--IAVETNGTIEPPQG 127 + + G+ I++ TNG++ P+ Sbjct: 80 RIKQTGWFEDISMTTNGSLLAPRA 103 >gi|281356684|ref|ZP_06243175.1| (Formate-C-acetyltransferase)-activating enzyme [Victivallis vadensis ATCC BAA-548] gi|281316811|gb|EFB00834.1| (Formate-C-acetyltransferase)-activating enzyme [Victivallis vadensis ATCC BAA-548] Length = 298 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 46/145 (31%), Gaps = 16/145 (11%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQ------GTKGGRYNVDQLADLIEEQWITGEKEG 85 C + +E+ + C C D Q G ++L + G + Sbjct: 61 CPHGAIKERTLDRSVCSGC-ADRACRQFRHSALEWAGRERTPEELEKEVLRL-SAGWDDF 118 Query: 86 RYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIE----PPQGIDWICVSPKAGC 139 GGEP LQ L I L K A+E+N T + +D KAG Sbjct: 119 GGVTFGGGEPTLQAPELLDCINRLKKHRIHTAIESNATTPEFPDVAREVDLAIADLKAGT 178 Query: 140 DLKIK--GGQELKLVFPQVNVSPEN 162 G EL V + + E Sbjct: 179 PEVFHDCTGGELAPVLDHLAEAAER 203 >gi|56478522|ref|YP_160111.1| molybdenum cofactor biosynthesis protein A [Aromatoleum aromaticum EbN1] gi|56314565|emb|CAI09210.1| Molybdenum cofactor biosynthesis protein A [Aromatoleum aromaticum EbN1] Length = 359 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 12/105 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 DR + +C +C R + ++ + R +TGGEPLL+ Sbjct: 45 DRCNFRCIYC-MPRSVFGADYPFLPRKELLSFEEITRIARRFATRGVRKIRITGGEPLLR 103 Query: 99 VDVP-LIQALNK-RGFEIAVETNGTIEP-------PQGIDWICVS 134 V LI+ L + E+ + TNG + P G+D + +S Sbjct: 104 KHVENLIEMLAQIPDVELTLTTNGVLLPKMARTLKDAGLDRVTIS 148 >gi|238922883|ref|YP_002936396.1| pyruvate formate-lyase activating enzyme [Eubacterium rectale ATCC 33656] gi|238874555|gb|ACR74262.1| pyruvate formate-lyase activating enzyme [Eubacterium rectale ATCC 33656] Length = 249 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 22/109 (20%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GCN+ +C++C DT + ++ Sbjct: 26 VF--LKGCNM-----------RCKYCHNPDTWAKCGENDGAKLMTPQEVLKTAMRYKAY- 71 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG---TIEPP 125 K+ ++GGE LLQ+D L + ++G ++T+G T+E P Sbjct: 72 WKQTGGITVSGGEALLQIDFVTELFKLAKEKGVNTCLDTSGNPFTVEEP 120 >gi|237653116|ref|YP_002889430.1| molybdenum cofactor biosynthesis protein A [Thauera sp. MZ1T] gi|237624363|gb|ACR01053.1| molybdenum cofactor biosynthesis protein A [Thauera sp. MZ1T] Length = 359 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 22/110 (20%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D D+ + R + +++ + + R +TGG Sbjct: 45 DRCNFRCVYCMPREVFGD-DYAFL-----PRRQLLSFEEILRVARLFVARGVRKIRITGG 98 Query: 94 EPLLQVDVP-LIQALNKR-GFEIAVETNGTIEP-------PQGIDWICVS 134 EPLL+ DV LI L G E+ + TNG + P G+ + VS Sbjct: 99 EPLLRKDVDRLIGMLAALDGVEVTLTTNGVLLPKLARRLKDAGLHRVTVS 148 >gi|222100310|ref|YP_002534878.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359] gi|221572700|gb|ACM23512.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359] Length = 355 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 48/137 (35%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQG--TKGGRYNVDQLADLIEEQW 78 AVF F+GCNL C FC D ++ G ++G ++D+L ++ Sbjct: 127 AVF--FAGCNL-----------DCLFCQNIDHKYMVKDGRISEGKVVDLDELIEVAMNPR 173 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKR--------GF----------EIAVET 118 ++ GG+P L + L K+ G I++ET Sbjct: 174 VSC------VCFFGGDPTPWSIFALEFARKLKKKRRICWETNGLAHPRIMENMARISLET 227 Query: 119 NGTIEPPQGIDWICVSP 135 GT+ IDW SP Sbjct: 228 GGTV----KIDWKAFSP 240 >gi|291287042|ref|YP_003503858.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290884202|gb|ADD67902.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 424 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 2/77 (2%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104 C++C + + Y + I E + ++TGGEPLL + + LI Sbjct: 99 NCKYCYIQPKINKRNQVTSYIETSIFAKIVE-KVANFNPNAQILVTGGEPLLHPEFLKLI 157 Query: 105 QALNKRGFEIAVETNGT 121 + L R V TNG+ Sbjct: 158 EILENRKLNFQVLTNGS 174 >gi|281423385|ref|ZP_06254298.1| pyruvate formate-lyase 1-activating enzyme [Prevotella oris F0302] gi|281402721|gb|EFB33552.1| pyruvate formate-lyase 1-activating enzyme [Prevotella oris F0302] Length = 261 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 35/134 (26%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F ++ G G RF GC + +C FC DT + Sbjct: 27 ESFGSVDGPG---------IRFLIFLQGCPM-----------RCLFCHNPDT----WKQD 62 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 K D+L + E++ + E ++GGE LLQ+D + L + + R ++T Sbjct: 63 KTRPMTADELLNQ-AEKYRSYWGEKGGITVSGGEALLQIDFLIELFEKAHARSINTCLDT 121 Query: 119 NGTIEPPQGIDWIC 132 + + W Sbjct: 122 S-AQPFTRKDTWFT 134 >gi|156973834|ref|YP_001444741.1| pyruvate formate-lyase 1 activating enzyme [Vibrio harveyi ATCC BAA-1116] gi|156525428|gb|ABU70514.1| hypothetical protein VIBHAR_01544 [Vibrio harveyi ATCC BAA-1116] Length = 215 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 23/144 (15%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101 +C++C DT G V+++ + G +GGE +LQ + Sbjct: 2 RCKYCHNRDT----WDTHDGKEVTVEEIIAEAKTYRHFMNASGGGITCSGGEAMLQPEFV 57 Query: 102 -PLIQALNKRGFEIAVETNG-----TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155 +A G ++TNG T + +D DL + + +K Q Sbjct: 58 RDFFRAAQAEGIHTCLDTNGYIRKHTDVIDEVLD--------ATDLVMLDLKHMKDEIHQ 109 Query: 156 VNVSPENYIGFDFERFSLQPMDGP 179 + N DF R L + Sbjct: 110 EFIGVSNRRVLDFAR-YLHKIGQK 132 >gi|78221243|ref|YP_382990.1| radical SAM family protein [Geobacter metallireducens GS-15] gi|78192498|gb|ABB30265.1| Radical SAM [Geobacter metallireducens GS-15] Length = 356 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 17/95 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL CR C +D +G + ++ L++E + Sbjct: 15 TQKCNLKC--------VHCR-CSSDLTSSEGD----FTTEEGKKLLKE---IADFSKPVI 58 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 VL+GGEPL++ D+ L + G + + TNG + Sbjct: 59 VLSGGEPLMRKDIFELAEYGTSLGLRMCMATNGAL 93 >gi|311895369|dbj|BAJ27777.1| putative molybdenum cofactor biosynthesis protein A [Kitasatospora setae KM-6054] Length = 343 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 5/82 (6%) Query: 41 DRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C G+ +G + D+L L + R LTGGEPLL+ Sbjct: 37 DRCNLRCTYC-MPAEGLDWLPRGQTLDDDELLRL--ARIAVHRLGLRTLRLTGGEPLLRR 93 Query: 100 DVP-LIQALNKRGFEIAVETNG 120 +P L+ L + G E+++ TNG Sbjct: 94 GLPALLARLAELGAELSLTTNG 115 >gi|308182926|ref|YP_003927053.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori PeCan4] gi|308065111|gb|ADO07003.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori PeCan4] Length = 321 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 24/165 (14%) Query: 46 QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102 +C++C T +D + + ++ G K+ R +TGGEPLL+ Sbjct: 24 RCQYCMPTTPLNFFDDE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDE 78 Query: 103 LIQALNKRGFEIA--VETNGTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQELK 150 I L+ E+A + TNG + D + V S K+ LKI LK Sbjct: 79 FIAKLHAYNKEVALVLSTNGFLLKKMAKDLKNDGLSRVNVSLDSLKSDRVLKISQKDALK 138 Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 + S + + + ++ + +E L + Y Sbjct: 139 NTLEGIEESLKVGLKL---KLNMVVIKSVNDDEILEL-LEYAKNR 179 >gi|218709044|ref|YP_002416665.1| pyruvate formate lyase-activating enzyme 1 [Vibrio splendidus LGP32] gi|218322063|emb|CAV18128.1| Pyruvate formate-lyase 1-activating enzyme [Vibrio splendidus LGP32] Length = 246 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C +C DT + G V+++ + + Sbjct: 25 VF--LQGC-----------LMRCMYCHNRDT----WELHDGKEVTVEEIINEAKSYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 + G +GGE +LQ + +A G ++TNG Sbjct: 68 KASGGGITCSGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNG 108 >gi|113473995|ref|YP_720056.1| hypothetical protein Tery_0075 [Trichodesmium erythraeum IMS101] gi|110165043|gb|ABG49583.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101] Length = 91 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 6/77 (7%) Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFER----FSLQPMDGPFLEENTNLAISYCFQ 194 E+KLV + E Y + LQP + L + Sbjct: 17 VPSMWTRASEIKLVI-ETGKELEFYSKILLVKNQTPVFLQPESY-NRDFTLPLVQKLLRE 74 Query: 195 NPKWRLSVQTHKFIGIR 211 RLS+Q HK++GI+ Sbjct: 75 YSHCRLSIQLHKYLGIK 91 >gi|328956156|ref|YP_004373489.1| pyruvate formate-lyase activating enzyme [Coriobacterium glomerans PW2] gi|328456480|gb|AEB07674.1| pyruvate formate-lyase activating enzyme [Coriobacterium glomerans PW2] Length = 265 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 24/90 (26%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VFC GC + +C +C DT V G V+ L + E Sbjct: 40 VFC--QGCPM-----------RCAYCHNPDTWRV----DSGASVTVEHLVEEFESNR--S 80 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNK 109 + ++GGEPLLQ D L A++ Sbjct: 81 FYKTGGITVSGGEPLLQPDFVGDLFGAMHD 110 >gi|323494775|ref|ZP_08099874.1| pyrroloquinoline quinone biosynthesis protein PqqE [Vibrio brasiliensis LMG 20546] gi|323310968|gb|EGA64133.1| pyrroloquinoline quinone biosynthesis protein PqqE [Vibrio brasiliensis LMG 20546] Length = 371 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 21/137 (15%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E + C +C TD G K N +Q ++E+ G + + Sbjct: 10 PLWLLAELTYQCPLHCAYCSNPTDL----GDKANELNTEQWFSVLEQARKLGSVQLGF-- 63 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 +GGEPLL+ D+ L++ GF + T+G I ++ K LK G Sbjct: 64 -SGGEPLLRKDLEQLVERGRSLGFYTNLITSG----------IGLTDKRIKRLKQAGLDH 112 Query: 149 LKLVFPQVNVSPENYIG 165 +++ F + + I Sbjct: 113 IQISFQAADPELNDAIA 129 >gi|304558306|gb|ADM40970.1| Pyruvate formate-lyase activating enzyme [Edwardsiella tarda FL6-60] Length = 291 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 53/159 (33%), Gaps = 26/159 (16%) Query: 22 RVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-------DTDFVGIQGTKGG 63 R VF F GC + R +C C D G G Sbjct: 38 RSVVF--FKGCPHRCPWCANPESISPAPQTVRREQRCLHCTPCLNDADECPSGAMERIGR 95 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGT 121 + QL + + + G L+GGE LLQ + L + G A+ET G Sbjct: 96 TVTLAQLEAEVMKDVVFFRSSGGGVTLSGGEVLLQAAFATRFLTRLRRLGVHCALETAGD 155 Query: 122 IEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 + + + + DLKI + + L+L P+ Sbjct: 156 GPASRLLPLASLCDEVLFDLKIMDAERSARLLRLNLPRA 194 >gi|224826786|ref|ZP_03699886.1| coenzyme PQQ biosynthesis protein E [Lutiella nitroferrum 2002] gi|224601006|gb|EEG07189.1| coenzyme PQQ biosynthesis protein E [Lutiella nitroferrum 2002] Length = 381 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 6/93 (6%) Query: 30 SGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 G LW E R +C +C+ + T+ + ++ ++ E G + + Sbjct: 13 QGKPLWLSLELTYRCPLKCSWCNNPLDFDKYTEHE-LSTEEWKRVLAEARELGALQLGF- 70 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 TGGEPL + D+ L+ ++ GF + T+G Sbjct: 71 --TGGEPLQRPDLEELVAYADELGFYTNLITSG 101 >gi|323144590|ref|ZP_08079178.1| pyruvate formate-lyase 1-activating enzyme [Succinatimonas hippei YIT 12066] gi|322415599|gb|EFY06345.1| pyruvate formate-lyase 1-activating enzyme [Succinatimonas hippei YIT 12066] Length = 251 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 34/120 (28%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F ++ G G RF GC +C++C D+ + Sbjct: 10 ETFGSVDGPG---------VRFVIFMQGC-----------RMRCKYCHNPDS----WKIN 45 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 G D++ + K+G ++GGEPLLQ+D L + K G ++T Sbjct: 46 SGEEKTSDEVLNYALRYRNYWGKDGG-ITVSGGEPLLQIDFITELFKKAKKEGVHTTIDT 104 >gi|294501748|ref|YP_003565448.1| molybdenum cofactor biosynthesis protein A [Bacillus megaterium QM B1551] gi|294351685|gb|ADE72014.1| molybdenum cofactor biosynthesis protein A [Bacillus megaterium QM B1551] Length = 338 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 33/129 (25%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D F+ + + D+L L + G K+ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGADYPFLPAE----NILSFDELERLTRLFALLGVKKVR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNK-RGF-EIAVETNGTIEP-------PQGIDWICVSPKAGCDLK 142 GEPLL+ +P LI L + G +IA+ TNG++ G+ + VS Sbjct: 75 GEPLLRKGLPDLINRLKQIEGIDDIAITTNGSLLKKHAEALSKAGLSRVTVS-------- 126 Query: 143 IKGGQELKL 151 + E++ Sbjct: 127 LDSLDEVRF 135 >gi|224371823|ref|YP_002605987.1| putative heme biosynthesis protein [Desulfobacterium autotrophicum HRM2] gi|223694540|gb|ACN17823.1| putative heme biosynthesis protein [Desulfobacterium autotrophicum HRM2] Length = 333 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 25/115 (21%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 + CNL +C+ C ++ ++ + + Sbjct: 21 LTKCNL-----------RCKHC---YINRDEHGRETLDIGTIKAWLA--LFLDRAPDTNL 64 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNGTIE-------PPQGIDWICVS 134 + GGEP L D+ P ++A + GF I ++TNG + P+ +D+I S Sbjct: 65 IFLGGEPTLHPDLAPAVRAARQMGFSSITIDTNGYLFHDILEKITPEDVDFISFS 119 >gi|256833419|ref|YP_003162146.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Jonesia denitrificans DSM 20603] gi|256686950|gb|ACV09843.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Jonesia denitrificans DSM 20603] Length = 232 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 26/130 (20%) Query: 17 GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 G A +F GC +C +C ++ I K G +Q+ + + Sbjct: 27 GKFA--AVLF--LQGCP-----------WRCTYC-HNYSIIDAKKPGVIPWEQVVHTLTQ 70 Query: 77 QWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE-----PPQGIDW 130 + + V +GGEP Q V + + + GF + T G +DW Sbjct: 71 RQGLLDG----VVFSGGEPTRQIAVVDAARRVKEMGFAVGFHTGGQYPKRIESLLPLLDW 126 Query: 131 ICVSPKAGCD 140 + + KA + Sbjct: 127 VGLDIKAPSE 136 >gi|330898849|gb|EGH30268.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. japonica str. M301072PT] Length = 372 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 10/96 (10%) Query: 27 CRFSGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 R LW E R QC +C + +G + +Q +++E G + Sbjct: 2 VRL---PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELSTEQWFKVMQEAREMGAAQ- 55 Query: 86 RYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 +GGEPL+ Q LI + GF + T+G Sbjct: 56 --IGFSGGEPLVRQDLAELIAEARRLGFYTNLITSG 89 >gi|327482183|gb|AEA85493.1| heme d1 biosynthesis protein NirJ [Pseudomonas stutzeri DSM 4166] Length = 393 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 14/111 (12%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + R + CR C + + +I++ G R +L+G Sbjct: 30 PVVIWNLLRRCNLTCRHC--YATSADSEFRDELDTAEALRVIDDLHEAG---VRVLILSG 84 Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGI--------DWICVS 134 GEPLL+ D+ L + F +A+ TNGT+ I D++ +S Sbjct: 85 GEPLLRGDIFQLADYARDKSFFVALSTNGTLIDEGNIARIAAARFDYVGIS 135 >gi|254508526|ref|ZP_05120644.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus 16] gi|219548551|gb|EED25558.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus 16] Length = 220 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 48/148 (32%), Gaps = 25/148 (16%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 GC +C +C DT G VD++ + + G Sbjct: 2 QGC-----------LMRCMYCHNRDT----WDTHGGKEVTVDEIINEAKSYRHFMNASGG 46 Query: 87 YCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKI 143 +GGE +LQ + +A G ++TNG I ID + DL + Sbjct: 47 GVTCSGGEAMLQPEFVRDFFRAAQSEGIHTCLDTNGYIRKHTDVIDEVL----EATDLVM 102 Query: 144 KGGQELKLVFPQVNVSPENYIGFDFERF 171 + +K + N DF R+ Sbjct: 103 LDLKHMKDEIHHDFIGVSNKRTLDFARY 130 >gi|291528757|emb|CBK94343.1| pyruvate formate-lyase 1-activating enzyme [Eubacterium rectale M104/1] Length = 249 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 22/109 (20%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GCN+ +C++C DT + ++ Sbjct: 26 VF--LKGCNM-----------RCKYCHNPDTWAKCGENDGAKLMTPQEVLKTAMRYKAY- 71 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG---TIEPP 125 K+ ++GGE LLQ+D L + ++G ++T+G T+E P Sbjct: 72 WKQTGGITVSGGEALLQIDFVTELFKLAKEKGVNTCLDTSGNPFTVEEP 120 >gi|126179503|ref|YP_001047468.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanoculleus marisnigri JR1] gi|125862297|gb|ABN57486.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanoculleus marisnigri JR1] Length = 232 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 36/104 (34%), Gaps = 24/104 (23%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 GR A VF R GC A+C +C + D++ +I E Sbjct: 18 GRAACTVFLR--GCP-----------ARCFYC---HNIAIQDGEDLRDADEIIAMIRESR 61 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR--GFEIAVETNG 120 V +GGEP LQ A R G + + TNG Sbjct: 62 TVAGA----VVFSGGEPTLQGQALAHLAAAARNMGLSVGLHTNG 101 >gi|310777957|ref|YP_003966290.1| pyruvate formate-lyase activating enzyme [Ilyobacter polytropus DSM 2926] gi|309747280|gb|ADO81942.1| pyruvate formate-lyase activating enzyme [Ilyobacter polytropus DSM 2926] Length = 244 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 33/133 (24%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF GC L +C++C + ++ A+ I ++ + Sbjct: 26 VF--TQGCPL-----------RCKYC----HNPDTWHMPDASYEEDANYIVKEISRYKPF 68 Query: 85 GRY---CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI------EPPQGIDWI-- 131 R L+GGEP +Q + L + + AV+T+G E + +D + Sbjct: 69 FRNGGGMTLSGGEPFMQAEFAKELFRLCKENDINTAVDTSGIYLNDTVKEALEYVDLVLL 128 Query: 132 ---CVSPKAGCDL 141 C+ P+ DL Sbjct: 129 DIKCIDPEIYKDL 141 >gi|294666547|ref|ZP_06731788.1| molybdenum cofactor biosynthesis protein A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603691|gb|EFF47101.1| molybdenum cofactor biosynthesis protein A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 343 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 16/102 (15%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 +C +C D R + DQL L+ G + R LTGGEPLL+ D+P Sbjct: 36 RCGYCMPADRVPDDYGFDSQQRLSFDQLETLVRAFVSVGVTKVR---LTGGEPLLRRDLP 92 Query: 103 -LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVS 134 LI L G E +A+ TNGT+ Q + I VS Sbjct: 93 SLIARLTAIEGIEDLALTTNGTLLARQAVALRQAGLRRITVS 134 >gi|294627927|ref|ZP_06706506.1| molybdenum cofactor biosynthesis protein A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292597841|gb|EFF41999.1| molybdenum cofactor biosynthesis protein A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 343 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 16/102 (15%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 +C +C D R + DQL L+ G + R LTGGEPLL+ D+P Sbjct: 36 RCGYCMPADRVPDDYGFDSQQRLSFDQLETLVRAFVSVGVTKVR---LTGGEPLLRRDLP 92 Query: 103 -LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVS 134 LI L G E +A+ TNGT+ Q + I VS Sbjct: 93 SLIARLTAIEGIEDLALTTNGTLLARQAVALRQAGLRRITVS 134 >gi|220929087|ref|YP_002505996.1| radical SAM protein [Clostridium cellulolyticum H10] gi|219999415|gb|ACL76016.1| Radical SAM domain protein [Clostridium cellulolyticum H10] Length = 438 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 23/103 (22%) Query: 32 CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 CNL C C D+ + + N++Q+ ++ E R V Sbjct: 115 CNL-----------NCHHCYNDSHAINYEP------NLEQIHSVVNEL---SSTRLRNIV 154 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI 131 +TGGEPL++ D+ +I L F + + TNGT+ Q I W+ Sbjct: 155 VTGGEPLMREDLKTIIGWLRPLTFNLTLATNGTLINEQNIPWL 197 >gi|115372634|ref|ZP_01459941.1| tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein, putative [Stigmatella aurantiaca DW4/3-1] gi|310823866|ref|YP_003956224.1| radical sam domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|115370355|gb|EAU69283.1| tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein, putative [Stigmatella aurantiaca DW4/3-1] gi|309396938|gb|ADO74397.1| Radical SAM domain protein [Stigmatella aurantiaca DW4/3-1] Length = 346 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 26/137 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + D K R + +++E + E V++ Sbjct: 34 CNLDCITCWNYAP------DLAQPKPVSWKRQRMDAATFHRMVDE---SAEAGAERIVIS 84 Query: 92 GG-EPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GG EP D+ I + RG + V +NGT+ DW +++ Q Sbjct: 85 GGGEPFTHPDIYSFIAKVKARGLRLTVISNGTL-----CDW----------ERVRELQVD 129 Query: 150 KLVFPQVNVSPENYIGF 166 +L+ + SPE Y+ + Sbjct: 130 QLLLNMASASPETYVAY 146 >gi|26990174|ref|NP_745599.1| radical SAM domain protein [Pseudomonas putida KT2440] gi|24985113|gb|AAN69063.1|AE016539_4 hypothetical protein PP_3461 [Pseudomonas putida KT2440] Length = 476 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 31/116 (26%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GCNL C +C D D + + G + + +E E R Sbjct: 110 TGCNL-----------SCTYCYKEDLD----KPSAGKKMSTTTAEASVEMLLKESPNEQR 154 Query: 87 Y-CVLTGGEPLLQVDVPLIQ--------ALNKRGFEIA--VETNGTIEPPQGIDWI 131 Y V GGEPL + PLI+ + G ++ + TN T+ + IDW+ Sbjct: 155 YSVVFFGGEPL--SNRPLIEHMVAYCERRFAEAGKQVEFIMTTNATLLTEEIIDWL 208 >gi|21241853|ref|NP_641435.1| molybdenum cofactor biosynthesis protein A [Xanthomonas axonopodis pv. citri str. 306] gi|24211979|sp|Q8PNH1|MOAA_XANAC RecName: Full=Molybdenum cofactor biosynthesis protein A gi|21107234|gb|AAM35971.1| molybdenum cofactor biosynthesis protein A [Xanthomonas axonopodis pv. citri str. 306] Length = 334 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 16/102 (15%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 +C +C D R + DQL L+ G + R LTGGEPLL+ D+P Sbjct: 27 RCGYCMPADRVPDDYGFDSQQRLSFDQLETLVRAFVSVGVTKVR---LTGGEPLLRRDLP 83 Query: 103 -LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVS 134 LI L G E +A+ TNGT+ Q + I VS Sbjct: 84 SLIARLTAIEGIEDLALTTNGTLLARQAVALRQAGLRRITVS 125 >gi|330810031|ref|YP_004354493.1| heme d1 biosynthesis protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378139|gb|AEA69489.1| heme d1 biosynthesis protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 392 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 17/101 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + D+ F T +D L D R +L+ Sbjct: 39 CNLTCKHCYATSA------DSVFRDELDTPAALQVIDDLHDA----------GVRVLILS 82 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GGEPLL+ D+ L +GF +A+ TNGT+ I+ I Sbjct: 83 GGEPLLREDLFQLSAYARDKGFFLALSTNGTLIDASNIEQI 123 >gi|255658493|ref|ZP_05403902.1| molybdenum cofactor biosynthesis protein A [Mitsuokella multacida DSM 20544] gi|260849292|gb|EEX69299.1| molybdenum cofactor biosynthesis protein A [Mitsuokella multacida DSM 20544] Length = 329 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 8/95 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +CR+C + +G + R+ ++ + +++ R LTGGEPL++ Sbjct: 18 DRCNLRCRYC----MPEEGVEKLRHEDILRFDEIVRIVRALASLGVRKVRLTGGEPLIRR 73 Query: 100 DV-PLIQALNK-RGFE-IAVETNGTIEPPQGIDWI 131 ++ L++ ++ G E IA+ TNG + D + Sbjct: 74 NIVELVREIHAVPGIETIAMTTNGVMLADMAEDLV 108 >gi|313898792|ref|ZP_07832326.1| putative pyruvate formate-lyase 1-activating enzyme [Clostridium sp. HGF2] gi|312956374|gb|EFR38008.1| putative pyruvate formate-lyase 1-activating enzyme [Clostridium sp. HGF2] Length = 298 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAV 116 +G ++ + + E G +GGEP +Q + L++A + GF AV Sbjct: 98 AFQGKEMTLEAIMAELCRDRDYYENSGGGITFSGGEPFVQQEALWELLRACKQEGFHTAV 157 Query: 117 ETNG 120 ET G Sbjct: 158 ETTG 161 >gi|160902443|ref|YP_001568024.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Petrotoga mobilis SJ95] gi|160360087|gb|ABX31701.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Petrotoga mobilis SJ95] Length = 213 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 24/123 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + G + + + ++ + E V+T Sbjct: 27 CNL-----------RCPYCHNPELVF--FTGKLVDEENIFSYLKSRVGVVEG----VVIT 69 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGC-DLKIK 144 GGEP LQ D+ I + GF + ++TNG +D I + K C K Sbjct: 70 GGEPTLQKDLRDFIIKIKDMGFLVKLDTNGHNPKVLNTVIDIVDMIAIDIKTSCQKYKTI 129 Query: 145 GGQ 147 GG Sbjct: 130 GGN 132 >gi|110637727|ref|YP_677934.1| GTP cyclohydrolase subunit MoaA [Cytophaga hutchinsonii ATCC 33406] gi|110280408|gb|ABG58594.1| GTP cyclohydrolase subunit MoaA [Cytophaga hutchinsonii ATCC 33406] Length = 317 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 4/77 (5%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LI 104 C +C T + V++ +I+ I + + LTGGEPLL ++P LI Sbjct: 29 ACVYCVTPGAIHTPSAEKVLTVEEYLSIIKN--IHSQVGLKTIRLTGGEPLLFKELPVLI 86 Query: 105 QALNKRGFE-IAVETNG 120 + + G I + TNG Sbjct: 87 KGIKALGITDIKLTTNG 103 >gi|18977826|ref|NP_579183.1| hypothetical protein PF1454 [Pyrococcus furiosus DSM 3638] gi|18893579|gb|AAL81578.1| hypothetical protein PF1454 [Pyrococcus furiosus DSM 3638] Length = 588 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 4/90 (4%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 NL + +R + C +C F +G ++Q+ ++ TG Sbjct: 141 NLLNIVLTNRCNLSCWYC--FFYAREGEPVYEPTLEQIRMMLRNAKKENPIGANAVQFTG 198 Query: 93 GEPLLQVDV-PLIQALNKRGF-EIAVETNG 120 GEP L+ D+ +I+ + G+ + + T+G Sbjct: 199 GEPTLRDDLIEIIKIAKEEGYDHVQLNTDG 228 >gi|326388685|ref|ZP_08210278.1| radical SAM domain-containing protein [Novosphingobium nitrogenifigens DSM 19370] gi|326206936|gb|EGD57760.1| radical SAM domain-containing protein [Novosphingobium nitrogenifigens DSM 19370] Length = 424 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 14/104 (13%) Query: 30 SGCNLWSGREQDRLSAQCRF-------CDTD----FVGIQGTKGGRYNVDQLADLIEEQW 78 +GC G D C CD F G + ++ + + + Sbjct: 35 AGCPFDCGLCPDHEQHSCLAIIEVTEACDLACPVCFADAADRNGRHRPLAEI-ETMLDVL 93 Query: 79 ITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNG 120 + E E ++GGEP L + ++ A+ +R + + TNG Sbjct: 94 VESEGEPDLVQISGGEPTLHPEFFAILDAVKRRPIRHVMINTNG 137 >gi|91773213|ref|YP_565905.1| radical SAM family Fe-S protein [Methanococcoides burtonii DSM 6242] gi|91712228|gb|ABE52155.1| Radical SAM family protein [Methanococcoides burtonii DSM 6242] Length = 346 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 21/95 (22%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFV--GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCNL CR T + G T ++ VD++ ++ Sbjct: 15 GCNLAC--------VHCRGSSTSEIPEGELSTSEAKHFVDEIVEM----------GDPIL 56 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 +LTGGEPL++ DV + + +G +A+ TNGT+ Sbjct: 57 ILTGGEPLVRKDVYEIARYATDKGLRVALATNGTL 91 >gi|87300730|ref|ZP_01083572.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp. WH 5701] gi|87284601|gb|EAQ76553.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp. WH 5701] Length = 343 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 41/131 (31%), Gaps = 41/131 (31%) Query: 27 CRF---SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 R + CNL C +C + + L+ G Sbjct: 1 MRLSLTARCNL-----------ACPYC----CPDSHDPPELLTLTERVQLVSAAADLGFG 45 Query: 84 EGRYCVLTGGEPLLQV-DVPLIQALN----------KRGF-EIAVETNGTI--------E 123 R LTGGEPLL L+ AL G EIA+ TNG + Sbjct: 46 RLR---LTGGEPLLHRGLEELVSALQPLRGPQASSGSPGLSEIALTTNGVLLSAQRAQGL 102 Query: 124 PPQGIDWICVS 134 G+D I VS Sbjct: 103 RAAGLDRITVS 113 >gi|325282230|ref|YP_004254772.1| glycyl-radical enzyme activating protein family [Odoribacter splanchnicus DSM 20712] gi|324314039|gb|ADY34592.1| glycyl-radical enzyme activating protein family [Odoribacter splanchnicus DSM 20712] Length = 260 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 36/119 (30%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFC--------------------DTDFVGIQGTKGG 63 VF GC L CR+C D +F I+ G Sbjct: 22 TVF--LKGCRL-----------HCRWCHNPESQAVGTVSMKQVRKLGDREFEEIRKVGYG 68 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120 +VD+L + I + + E+ G +GGEPLLQ L ++A R ++T G Sbjct: 69 -ISVDELVEEIAKDAVFFEESGGGVTFSGGEPLLQPVFLLECLKACKARRIHTCIDTAG 126 >gi|323697567|ref|ZP_08109479.1| Radical SAM domain protein [Desulfovibrio sp. ND132] gi|323457499|gb|EGB13364.1| Radical SAM domain protein [Desulfovibrio desulfuricans ND132] Length = 460 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 11/101 (10%) Query: 31 GCNLWSGREQDRLSAQCR------F-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 GC L G C + CD + G D D ++ + E Sbjct: 72 GCPLDCGLCDAHRQHTCTALIEVTWRCDLGCPVCFASSGKAAPPDPSLDALDTLFDRVEL 131 Query: 84 EGRYCVL--TGGEPLLQVDVPLIQAL-NKRGFE-IAVETNG 120 +C + +GGEP ++ D+P I L RGF I + TNG Sbjct: 132 ASGHCNIQLSGGEPTVREDLPEIIRLGKARGFPFIQLNTNG 172 >gi|308050261|ref|YP_003913827.1| pyruvate formate-lyase activating enzyme [Ferrimonas balearica DSM 9799] gi|307632451|gb|ADN76753.1| pyruvate formate-lyase activating enzyme [Ferrimonas balearica DSM 9799] Length = 246 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 36/105 (34%), Gaps = 24/105 (22%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G V QL + + Sbjct: 21 IRFIAFLQGC-----------LMRCQYCHNRDT----WDLEGGKEVTVPQLMEQLVSYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI 122 E G +GGE +LQ+D A G ++TNG I Sbjct: 66 FFEASGGGVTASGGEAVLQMDFVKEWFTACKAEGIHTCLDTNGLI 110 >gi|322420709|ref|YP_004199932.1| Radical SAM domain-containing protein [Geobacter sp. M18] gi|320127096|gb|ADW14656.1| Radical SAM domain protein [Geobacter sp. M18] Length = 347 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C G + DL+E+ G + Sbjct: 24 CNL-----------RCTTC---LSSSGEPAHGELTTAEALDLVEQVHQAGVFQ---INFG 66 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GGEP ++ D ++ ++RG + TNGT+ Sbjct: 67 GGEPFMRPDFEQILATCHERGIMTCISTNGTL 98 >gi|241663687|ref|YP_002982047.1| pyrroloquinoline quinone biosynthesis protein PqqE [Ralstonia pickettii 12D] gi|240865714|gb|ACS63375.1| coenzyme PQQ biosynthesis protein E [Ralstonia pickettii 12D] Length = 400 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R C FC D+ +Q D+ + G + Sbjct: 26 PLWLLAELTYRCPLHCAFCSNPVDYTRHD----QELTTEQWCDVFTQARALGAVQLG--- 78 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 L+GGEPLL+ D+ L+ + GF + + T+G Sbjct: 79 LSGGEPLLRKDLETLVAHAHGLGFYVNLVTSG 110 >gi|325925005|ref|ZP_08186428.1| GTP cyclohydrolase subunit MoaA [Xanthomonas perforans 91-118] gi|325544589|gb|EGD15949.1| GTP cyclohydrolase subunit MoaA [Xanthomonas perforans 91-118] Length = 343 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 9/83 (10%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 +C +C D R + DQL L+ G + R LTGGEPLL+ D+P Sbjct: 36 RCGYCMPADRVPDDYGFDSQQRLSFDQLETLVRAFVSVGVTKVR---LTGGEPLLRRDLP 92 Query: 103 -LIQALNK-RGFE-IAVETNGTI 122 LI L G E +A+ TNGT+ Sbjct: 93 SLIARLAAIEGIEDLALTTNGTL 115 >gi|168334360|ref|ZP_02692544.1| molybdopterin cofactor biosynthesis protein A, putative [Epulopiscium sp. 'N.t. morphotype B'] Length = 299 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 27/112 (24%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C VG + +D++ + G + LT Sbjct: 5 CNL-----------KCIYC----VGADKFEAKYLTIDEIERVANIFATLGITK---VKLT 46 Query: 92 GGEPLLQVDVP-LIQALNKRGF-EIAVETNG-------TIEPPQGIDWICVS 134 GGEPL++ D+ +++ L G E+ + TNG T G+ I VS Sbjct: 47 GGEPLIRSDLANIVKRLRSAGMVEVTLTTNGLLLEQKLTTLIAAGVTAINVS 98 >gi|113953519|ref|YP_732072.1| molybdenum cofactor biosynthesis protein MoaA [Synechococcus sp. CC9311] gi|113880870|gb|ABI45828.1| molybdenum cofactor biosynthesis protein MoaA [Synechococcus sp. CC9311] Length = 348 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 44/130 (33%), Gaps = 40/130 (30%) Query: 27 CRF---SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 R + CNL C +C G LI G Sbjct: 16 LRLSLTARCNL-----------SCPYC----CPESIEPPGLLTTADQLRLISAACRLGAH 60 Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALN----------KRGFEIAVETNGTIEPP------- 125 R LTGGEPLL + PL+ AL+ R E+A+ TNG++ Sbjct: 61 TLR---LTGGEPLLTERLWPLLDALSLGRQTAAHPFSRLKEVAITTNGSLLNDNKARRLR 117 Query: 126 -QGIDWICVS 134 G+D I +S Sbjct: 118 AAGVDRITIS 127 >gi|311281583|ref|YP_003943814.1| glycyl-radical enzyme activating protein family [Enterobacter cloacae SCF1] gi|308750778|gb|ADO50530.1| glycyl-radical enzyme activating protein family [Enterobacter cloacae SCF1] Length = 303 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 8/84 (9%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 G + LA+ + + +GGEP LQ D L G + ++T Sbjct: 104 GEAMSSQALAERLLRDKAFYDASQGGVTFSGGEPALQADFVRETAARLRAEGVHVCLDTA 163 Query: 120 GTI------EPPQGIDWICVSPKA 137 G + + +D + KA Sbjct: 164 GHLRWEKLRPLVEAVDLVSYDFKA 187 >gi|219853188|ref|YP_002467620.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c] gi|219547447|gb|ACL17897.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c] Length = 399 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 17/112 (15%) Query: 18 GHAG--RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE 75 +G R +F W+ DR + C C + G + T G + +I+ Sbjct: 34 AFSGMYRPVIF--------WNLT--DRCNLSCNHCY-NQSGPERTTEGELTTAEALKVID 82 Query: 76 EQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 + + + TGGEPL++ D+ L Q RG ++A+ TNGT+ P Sbjct: 83 DL---ADMGVPLILFTGGEPLMRADIWDLAQHARNRGLKMALSTNGTLITPD 131 >gi|167586605|ref|ZP_02378993.1| molybdenum cofactor biosynthesis protein A [Burkholderia ubonensis Bu] Length = 370 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 25/114 (21%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + ++++ + G ++ R +TGGE Sbjct: 45 DRCNFRCVYCMPRAVFDKDYPFLPHS--ALLTLEEIERIARLFVAHGVEKIR---ITGGE 99 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 PLL+ ++ LI+ L + R ++ + TNG++ G+ + VS Sbjct: 100 PLLRKNLEFLIERLARLTTHDGRPLDLTLTTNGSLLARKARALKDAGLKRVTVS 153 >gi|121607765|ref|YP_995572.1| molybdenum cofactor biosynthesis protein A [Verminephrobacter eiseniae EF01-2] gi|121552405|gb|ABM56554.1| GTP cyclohydrolase subunit MoaA [Verminephrobacter eiseniae EF01-2] Length = 384 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 61/153 (39%), Gaps = 25/153 (16%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D ++ + G +++A L G ++ R LTGGE Sbjct: 48 DRCNFRCNYCMPKEVFDKNYPYL--PHGALLRFEEIARLARLFLAHGVRKIR---LTGGE 102 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ ++P L+ L + ++ + TNG++ G++ + VS + + Sbjct: 103 PLLRKNLPALVAQLAALRTADGQAPDLTLTTNGSLLARQARALRDAGLNRVTVSLDSLDE 162 Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173 + ++ QV E R + Sbjct: 163 AVFRRMNDVDFPVAQVLAGIEAARAAGLSRIKV 195 >gi|34496868|ref|NP_901083.1| pyruvate formate lyase activating enzyme [Chromobacterium violaceum ATCC 12472] gi|34102723|gb|AAQ59088.1| pyruvate formate lyase activating enzyme [Chromobacterium violaceum ATCC 12472] Length = 259 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 30/132 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 F SGC +C +C DT + G + +V+Q + Sbjct: 40 FFV--SGC-----------QFRCLYCHNPDT----WKLHNGRQVSVEQALSEVAPYARFL 82 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKR-GFEIAVETNG------TIEPPQGIDWIC 132 + G ++GGEPL+Q + L + +R G A++T G + +D + Sbjct: 83 KFAGG-VTISGGEPLMQHEFVGELFHEIKQRFGLHTALDTQGFLHERVSDAWFDDVDLVM 141 Query: 133 VSPKAGCDLKIK 144 + K K + Sbjct: 142 LDIKHSDPEKYQ 153 >gi|150389760|ref|YP_001319809.1| glycyl-radical activating family protein [Alkaliphilus metalliredigens QYMF] gi|149949622|gb|ABR48150.1| glycyl-radical enzyme activating protein family [Alkaliphilus metalliredigens QYMF] Length = 301 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 YN +Q+ +IE+Q I G +GGE LQ D+ L+ L + ++A+ET+G Sbjct: 106 YNTEQILKMIEKQEIFYRYSGGGVTFSGGEAALQADILRDLVCKLYDKAIDLAIETSG 163 >gi|296128757|ref|YP_003636007.1| Radical SAM domain protein [Cellulomonas flavigena DSM 20109] gi|296020572|gb|ADG73808.1| Radical SAM domain protein [Cellulomonas flavigena DSM 20109] Length = 345 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 22/107 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR C + + ++E+ G ++ Sbjct: 28 CNL-----------RCRHC---YSRSGPDVDEALTTALVRSVVEDAAALGYG---VLGVS 70 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGID----WICV 133 GGEPLL + L++ G V TNG + P+ +D W+ V Sbjct: 71 GGEPLLHPGLGELLRTARGAGMRTTVTTNGMLLTPRRVDELAGWVDV 117 >gi|85058965|ref|YP_454667.1| pyruvate formate lyase-activating enzyme 1 [Sodalis glossinidius str. 'morsitans'] gi|84779485|dbj|BAE74262.1| pyruvate formate-lyase 1 activating enzyme [Sodalis glossinidius str. 'morsitans'] Length = 246 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 52/153 (33%), Gaps = 27/153 (17%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F F GC +C +C DT G V+++ + Sbjct: 25 IF--FQGC-----------LMRCLYCHNRDT----WDTHGGREITVEEIMREVISYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGIDWICVSPKAG 138 G +GGE +LQ + +A + G V+TNG ID + Sbjct: 68 NASGGGVTASGGEAILQAEFVRDWFRACHAEGINTCVDTNGFVRRYDPVIDELL----EV 123 Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171 DL + +E+ Q V N+ DF R+ Sbjct: 124 TDLVMLDIKEMNDDIHQNLVGVSNHRTLDFARY 156 >gi|330990520|ref|ZP_08314478.1| Molybdenum cofactor biosynthesis protein A [Gluconacetobacter sp. SXCC-1] gi|329762423|gb|EGG78909.1| Molybdenum cofactor biosynthesis protein A [Gluconacetobacter sp. SXCC-1] Length = 358 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 17/108 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGT----KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 DR + +C +C +G R + D++ + G + R LTGGEPL Sbjct: 32 DRCNFRCPYCMPKATYHEGFRFLGPKERLDFDEIERVARMAAELGVTKIR---LTGGEPL 88 Query: 97 LQVDVP-LIQALNKR-GFE-IAVETNGTIEPP-------QGIDWICVS 134 L+ +P L++ L G E +A+ TNG + P G+ + VS Sbjct: 89 LRPGLPDLVRRLGALPGIEDVALTTNGVLLPRFAPALRQAGLQRVTVS 136 >gi|121592520|ref|YP_984416.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Acidovorax sp. JS42] gi|120604600|gb|ABM40340.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Acidovorax sp. JS42] Length = 228 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 41/124 (33%), Gaps = 26/124 (20%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 GR+A VFC GC +C +C G +E+ Sbjct: 28 GRLAAVVFC--QGCP-----------WRCGYC-----HNAGLLDAAAPAPHRWGEVEQLL 69 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 T V +GGEP LQ +P + + GF + T G +DW+ Sbjct: 70 HTRRGLLDGVVFSGGEPTLQAALPDALARVRALGFATGLHTAGMYPERLQALLPLLDWVG 129 Query: 133 VSPK 136 + K Sbjct: 130 LDIK 133 >gi|295707098|ref|YP_003600173.1| molybdenum cofactor biosynthesis protein A [Bacillus megaterium DSM 319] gi|294804757|gb|ADF41823.1| molybdenum cofactor biosynthesis protein A [Bacillus megaterium DSM 319] Length = 338 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 33/129 (25%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D F+ + + D+L L G K+ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGADYPFLPAE----NILSFDELERLTRLFASLGVKKVR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNK-RGF-EIAVETNGTIEP-------PQGIDWICVSPKAGCDLK 142 GEPLL+ +P LI L + G +IA+ TNG++ G+ + VS Sbjct: 75 GEPLLRKGLPDLINRLKQIEGIDDIAITTNGSLLKKHAEALSKAGLSRVTVS-------- 126 Query: 143 IKGGQELKL 151 + E++ Sbjct: 127 LDSLDEVRF 135 >gi|283784587|ref|YP_003364452.1| putative pyruvate formate-lyase 3-activating enzyme [Citrobacter rodentium ICC168] gi|282948041|emb|CBG87605.1| putative pyruvate formate-lyase 3-activating enzyme [Citrobacter rodentium ICC168] Length = 299 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G NVD++ + ++ G L+GGEP +Q ++ L +A ++ G AVET Sbjct: 101 GEVRNVDEIMSTVLRDKPFYDRSGGGITLSGGEPFMQPELAAALFKASHEAGIHTAVET 159 >gi|188996400|ref|YP_001930651.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931467|gb|ACD66097.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 227 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 29/149 (19%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 FS CN+ +C +C + + D + + Sbjct: 25 FSKCNM-----------RCPYCYNPEIVFESEGK-----DLSENKVISFLRKRVGLLEGV 68 Query: 89 VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAG-- 138 VL GGEP L D+ + + GF I ++TNG+ ID++ + KA Sbjct: 69 VLCGGEPTLYKDLIGFAKKIKDLGFLIKLDTNGSNPYVVNVLIKNHLIDYVALDFKAPFG 128 Query: 139 ---CDLKIKGGQELKLVFPQVNVSPENYI 164 K ++K + S +Y Sbjct: 129 KYFSITKFNNIDKIKDSLEILVNSDIDYE 157 >gi|166031378|ref|ZP_02234207.1| hypothetical protein DORFOR_01067 [Dorea formicigenerans ATCC 27755] gi|166028783|gb|EDR47540.1| hypothetical protein DORFOR_01067 [Dorea formicigenerans ATCC 27755] Length = 302 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 18/172 (10%) Query: 43 LSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 S +C+ C D + + +G Y V++L +++ G +GGEPL+ Sbjct: 81 DSDECKLCGTCIDGCYADARVRQGTDYTVEELMEVLGRDEHYYLASGGGITFSGGEPLMY 140 Query: 99 VDVPL--IQALNKRGFEIAVETNGTIE------PPQGIDWICVSPKAGCDLKIKGGQELK 150 + + KRG+ I +ET G + +D I K K K EL Sbjct: 141 SKFIHACARKIRKRGWNILIETCGQVPQENIEMIASDVDTIYCDYKHYDPEKHK---ELT 197 Query: 151 LVFPQVNVSPENYIGFDFE-RFSLQPMDGPFLEENTNLAISYCFQNPKWRLS 201 V + +S +I FE F L+ P + T AI + + RLS Sbjct: 198 GVDNRQIISNIRWIDEHFEGDFYLRYPYIPGCNDGTE-AIEQFLKFAE-RLS 247 >gi|73669704|ref|YP_305719.1| heme biosynthesis protein NirJ-2 [Methanosarcina barkeri str. Fusaro] gi|72396866|gb|AAZ71139.1| heme biosynthesis protein (NirJ-2) [Methanosarcina barkeri str. Fusaro] Length = 479 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 26/112 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C+ C + Q ++ LIEE G + Sbjct: 127 CNL-----------KCKHC---YQDAQNALPNELTTEESKKLIEELSDAGVA---LIAFS 169 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPP--------QGIDWICVS 134 GGEPL++ D ++ +K +++ +NGT+ P GID++ VS Sbjct: 170 GGEPLMRKDFFEVVAHAHKHDLYVSLASNGTLITPDVARGLMNAGIDYVEVS 221 >gi|325290818|ref|YP_004266999.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Syntrophobotulus glycolicus DSM 8271] gi|324966219|gb|ADY56998.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Syntrophobotulus glycolicus DSM 8271] Length = 222 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 24/124 (19%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 VF FSGCN G + ++ + ++ ++ + + Sbjct: 19 ATVF--FSGCNFRCGYCHNP------------TLVKNEGKPGISTGEVCSFLQTRQGLLD 64 Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI-----EPPQGIDWICVSPK 136 LTGGEPLL +V L + + + GF++ ++TNG+ E +D+I + K Sbjct: 65 G----VCLTGGEPLLSGEVKTLAKGIKELGFKLKLDTNGSNLEKLKEIAPFLDYIALDIK 120 Query: 137 AGCD 140 A + Sbjct: 121 AAPE 124 >gi|320096071|ref|ZP_08027672.1| pyruvate formate-lyase activating enzyme [Actinomyces sp. oral taxon 178 str. F0338] gi|319977011|gb|EFW08753.1| pyruvate formate-lyase activating enzyme [Actinomyces sp. oral taxon 178 str. F0338] Length = 293 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 22/104 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF +GC L +C +C DT F+ G + ++L I Sbjct: 69 RMTVF--LNGCPL-----------RCLYCHNPDT-FLMKDGAP---ISDEELLGRIARYR 111 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG 120 L+GGE L+Q +I + G ++T+G Sbjct: 112 RIFRATNGGITLSGGEVLMQPAFAKRIIHGAKQMGVHTCIDTSG 155 >gi|254418386|ref|ZP_05032110.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Brevundimonas sp. BAL3] gi|196184563|gb|EDX79539.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Brevundimonas sp. BAL3] Length = 215 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 39/124 (31%), Gaps = 24/124 (19%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 VFC GC +C +C + + + + + + + Sbjct: 23 ATVFC--QGCP-----------WRCGYCHNPHL-LPVRGAALLSWPATLEFLRRRRGLLD 68 Query: 83 KEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPK 136 V +GGEP LQ V + + GF I + T G +DW+ K Sbjct: 69 A----VVFSGGEPTLQKGLVEAVVQVRSLGFRIGLHTGGAYPSRLARVLPLVDWVGFDVK 124 Query: 137 AGCD 140 D Sbjct: 125 TAFD 128 >gi|22299396|ref|NP_682643.1| moaA/nifB/pqqE family protein [Thermosynechococcus elongatus BP-1] gi|22295579|dbj|BAC09405.1| moaA/nifB/pqqE family protein [Thermosynechococcus elongatus BP-1] Length = 335 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 8/79 (10%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R +A+C FCD G + + + + G +Y TGGEPLL+ D Sbjct: 13 RCNARCHFCD----IWALEPGKEADFSTIQTNLRDLKRLG---VKYVDFTGGEPLLRADA 65 Query: 102 PLI-QALNKRGFEIAVETN 119 P I + + GF ++ TN Sbjct: 66 PAIYREAKRLGFITSMTTN 84 >gi|295098863|emb|CBK87952.1| glycyl-radical enzyme activating protein family [Eubacterium cylindroides T2-87] Length = 303 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 8/73 (10%) Query: 50 CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 C + + T Y V++L IEE + ++ G +GGEP LQ D L+ L + Sbjct: 95 CPSSAIRYDST---LYTVEELISKIEEDRVFFKRNGG-VTFSGGEPFLQKDF-LVDILKE 149 Query: 110 ---RGFEIAVETN 119 RG A+E++ Sbjct: 150 CKKRGIHTAIESS 162 >gi|289642088|ref|ZP_06474240.1| hopanoid biosynthesis associated radical SAM protein HpnH [Frankia symbiont of Datisca glomerata] gi|289508051|gb|EFD28998.1| hopanoid biosynthesis associated radical SAM protein HpnH [Frankia symbiont of Datisca glomerata] Length = 351 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C R +V+ +EE + Sbjct: 55 CNL-----------SCTGCG-KIQHPASVLKQRMSVEDAMAAVEECG------APVVAIA 96 Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ +++ L R + + TNG + + + SP + I G +E Sbjct: 97 GGEPLMHPQLDEIVRQLVARKKFVLLCTNG-LLLRKKMAKFTPSPYFTFIVHIDGLRE 153 >gi|28379123|ref|NP_786015.1| formate acetyltransferase activating enzyme [Lactobacillus plantarum WCFS1] gi|254557252|ref|YP_003063669.1| formate acetyltransferase activating enzyme [Lactobacillus plantarum JDM1] gi|308181316|ref|YP_003925444.1| formate acetyltransferase activating enzyme [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271961|emb|CAD64866.1| formate acetyltransferase activating enzyme [Lactobacillus plantarum WCFS1] gi|254046179|gb|ACT62972.1| formate acetyltransferase activating enzyme [Lactobacillus plantarum JDM1] gi|308046807|gb|ADN99350.1| formate acetyltransferase activating enzyme [Lactobacillus plantarum subsp. plantarum ST-III] Length = 267 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 8/101 (7%) Query: 25 VFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC L W + + Q D + Q G VD + +I + Sbjct: 32 VF--FKGCPLRCKWCSNPESQSGEQESMYD-EQTAKQTIVGDYMTVDDIMKVILQDKDFY 88 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 E+ G +GGE L Q + L +A+ G +A ET G Sbjct: 89 EESGGGVTFSGGEVLFQASFAIELAKAVKAAGINLACETTG 129 >gi|89092878|ref|ZP_01165830.1| pyrroloquinoline quinone biosynthesis protein PqqE [Oceanospirillum sp. MED92] gi|89082903|gb|EAR62123.1| pyrroloquinoline quinone biosynthesis protein PqqE [Oceanospirillum sp. MED92] Length = 394 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E + QC +C G Q D+ + G + + + Sbjct: 28 PLWLLAELTYKCPLQCPYCSNPLDFADF--GSELTTQQWLDVFAQGRELGAVQLGF---S 82 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q + LI ++ G+ + T+G Sbjct: 83 GGEPLVRQDLIELIGGAHEMGYYTNLITSG 112 >gi|330427842|gb|AEC19176.1| radical SAM domain-containing protein [Pusillimonas sp. T7-7] Length = 250 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 39/119 (32%), Gaps = 24/119 (20%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +F GC +C +C + + D LA L + + Sbjct: 43 IFV--QGCP-----------WRCGYCHNPHLQERTPHSPIPWADALALLQRRRGLVDA-- 87 Query: 85 GRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKA 137 V +GGEP + + I GF+I + + GT +DW+ KA Sbjct: 88 ---VVFSGGEPTMDPGLADAIGQARALGFKIGLHSGGTHPERLKSVLPLVDWVGFDVKA 143 >gi|293391864|ref|ZP_06636198.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952398|gb|EFE02517.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter actinomycetemcomitans D7S-1] Length = 246 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 56/180 (31%), Gaps = 45/180 (25%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G V++L + Sbjct: 21 IRFILFLQGC-----------LMRCKYCHNRDT----WDLHGGKEITVEELMKEVVTYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 G +GGE +LQ + +A G ++TNG + + ID Sbjct: 66 FMNATGGGVTASGGEAILQAEFVRDWFRACKAEGIHTCLDTNGFVRHYDHVIDELIDV-- 123 Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC 192 DL + +EL Q + N +F ++ + N + I Y Sbjct: 124 ------TDLVLLDLKELNDKVHQNLIGVPNKRTLEFAKY--------LRKRNQPVWIRYV 169 >gi|195542037|gb|ACF98232.1| putative heme D1 biosynthesis protein NirJ [uncultured bacterium 6254] Length = 400 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 8/101 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 + R + C+ C + G ++ ++++ +L+ Sbjct: 35 PVVIWNLTRRCNLTCKHC---YALSADHHYPGELEEHEMLAVLQDLK---SYGVPALILS 88 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GGEPLL + PL GF + + TNGT+ D I Sbjct: 89 GGEPLLSPHLWPLADRAKALGFHLGLSTNGTLIDAAMADRI 129 >gi|210622808|ref|ZP_03293352.1| hypothetical protein CLOHIR_01300 [Clostridium hiranonis DSM 13275] gi|210154025|gb|EEA85031.1| hypothetical protein CLOHIR_01300 [Clostridium hiranonis DSM 13275] Length = 318 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 8/86 (9%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR + QC +C DT + + D + LI+ G K+ ++ GGEP L Sbjct: 18 DRCNLQCVYCKSADTKY--RPDYINDTLSADDIKFLIKAFAENGIKKIKFVGG-GGEPTL 74 Query: 98 QVDVP-LIQALNKRGFE-IAVETNGT 121 ++P I+ G I++ TNGT Sbjct: 75 HPNLPDFIKCARDCGIRDISLTTNGT 100 >gi|156936800|ref|YP_001434596.1| radical SAM domain-containing protein [Ignicoccus hospitalis KIN4/I] gi|156565784|gb|ABU81189.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I] Length = 245 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 22/96 (22%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR----YNVDQLADLIEEQWITGEKEGR 86 GCNL +C FC + R Y+ ++A+ + E Sbjct: 42 GCNL-----------RCAFC---WSWKATRGIPRTAKFYSPSEVAEKLIRIARERGFELA 87 Query: 87 YCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120 +GGEP L L I +N+ G +ETNG Sbjct: 88 RV--SGGEPTLCPTHLLKVIDLVNEAGLTFVLETNG 121 >gi|82703675|ref|YP_413241.1| radical SAM family protein [Nitrosospira multiformis ATCC 25196] gi|82411740|gb|ABB75849.1| Radical SAM [Nitrosospira multiformis ATCC 25196] Length = 369 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C R + ++ ++E + Sbjct: 38 CNLAC--------AGCG----KIDYPDHILDKRMSYEECMQAVDECG------APMVSIP 79 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ ++P +++ + R + + TN + + ID SP + + G +E Sbjct: 80 GGEPLIHKEMPEIVRGIIARRKYVYLCTN-ALLLKKKIDDYTPSPYLTFSIHLDGLKE 136 >gi|194337605|ref|YP_002019399.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Pelodictyon phaeoclathratiforme BU-1] gi|194310082|gb|ACF44782.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Pelodictyon phaeoclathratiforme BU-1] Length = 245 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 20/104 (19%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD--QLADLIEEQWITGEKEGRYC 88 GCN +C +C + GG + + + L+E Sbjct: 40 GCNF-----------RCPYCHNPELVDPVRSGGNHQIPFHDVVRLVER----NRSCLDAV 84 Query: 89 VLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIEPPQGIDWI 131 V+TGGEP + +P ++ K G + ++TNG+ P ID + Sbjct: 85 VVTGGEPAMHESLPESLRTFRKLGLLVKLDTNGSY--PDMIDLL 126 >gi|298736472|ref|YP_003728998.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori B8] gi|298355662|emb|CBI66534.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori B8] Length = 321 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 65/182 (35%), Gaps = 37/182 (20%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLLQV-DV 101 +C++C + T ++ ++L +++E I ++ + +TGGEPLL+ Sbjct: 24 RCQYC------MPATPLDFFDDEELLPLDNVLEFLKIAIDEGVKKIRITGGEPLLRKGLD 77 Query: 102 PLIQALNKRGFEIA--VETNGTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQEL 149 I L+ E+A + TNG + D + V S K+ LKI L Sbjct: 78 EFIAKLHAYNKEVALVLSTNGFLLKKMAKDLKDAGLSRVNVSLDSLKSDRVLKISQKDAL 137 Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209 K + S + + M +E L + Y K I Sbjct: 138 KNALEGIEESLKVGLKLKLNTVV---MKSVNDDEILEL-LEYAKN-----------KHIQ 182 Query: 210 IR 211 IR Sbjct: 183 IR 184 >gi|294673943|ref|YP_003574559.1| pyruvate formate-lyase activating enzyme [Prevotella ruminicola 23] gi|294473065|gb|ADE82454.1| pyruvate formate-lyase activating enzyme [Prevotella ruminicola 23] Length = 245 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 31/121 (25%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +CR+C DT +G Sbjct: 10 TESFGSVDGPG---------IRFLIFMQGC-----------RMRCRYCHNPDTWKLGSDA 49 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117 G VD+L + E +G ++GGE LLQ+D + L + ++RG ++ Sbjct: 50 C-GTTATVDELLNKAERYRSYWGPDGG-ITVSGGEALLQIDFLIELFEEAHRRGINTCLD 107 Query: 118 T 118 T Sbjct: 108 T 108 >gi|221211776|ref|ZP_03584754.1| molybdenum cofactor biosynthesis protein A [Burkholderia multivorans CGD1] gi|221167861|gb|EEE00330.1| molybdenum cofactor biosynthesis protein A [Burkholderia multivorans CGD1] Length = 367 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 53/145 (36%), Gaps = 24/145 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN G R +D+ + R + QL + G ++ R +T Sbjct: 45 CNFRCGYCMPREIFG-----SDYAFM--PPADRLSFAQLGRIARAFVSLGVEKIR---IT 94 Query: 92 GGEPLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKA 137 GGEPLL+ + LI+ L R E+A+ TNG + G+ + VS A Sbjct: 95 GGEPLLRRHLETLIERLAALTTVDGRPVELALTTNGALLAAKARTLRDAGLTRVTVSLDA 154 Query: 138 GCDLKIKGGQELKLVFPQVNVSPEN 162 D + + + +V E Sbjct: 155 LDDAVFRRMSDADVPVSRVLAGIEA 179 >gi|187929569|ref|YP_001900056.1| pyrroloquinoline quinone biosynthesis protein PqqE [Ralstonia pickettii 12J] gi|309781652|ref|ZP_07676386.1| coenzyme PQQ biosynthesis protein E [Ralstonia sp. 5_7_47FAA] gi|187726459|gb|ACD27624.1| coenzyme PQQ biosynthesis protein E [Ralstonia pickettii 12J] gi|308919627|gb|EFP65290.1| coenzyme PQQ biosynthesis protein E [Ralstonia sp. 5_7_47FAA] Length = 400 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R C FC D+ + +Q D+ + G + Sbjct: 26 PLWLLAELTYRCPLHCAFCSNPVDYTRHD----QELSTEQWCDVFTQARALGAVQLG--- 78 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 L+GGEPLL+ D+ L+ + GF + + T+G Sbjct: 79 LSGGEPLLRKDLETLVAHAHGLGFYVNLVTSG 110 >gi|83592252|ref|YP_426004.1| pyruvate-formate lyase-activating enzyme [Rhodospirillum rubrum ATCC 11170] gi|83575166|gb|ABC21717.1| pyruvate-formate lyase-activating enzyme [Rhodospirillum rubrum ATCC 11170] Length = 306 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 18/105 (17%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118 KG V Q+ +++ I + G L+GGEPL+Q + L++A +G+ A+ET Sbjct: 107 KGKGMTVWQVMQELQKDAINYRRSGGGITLSGGEPLVQSAFALELLKACKDKGWSTAMET 166 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQ----ELKLVFPQVNVS 159 G PK + + +LK + P+V+ S Sbjct: 167 TGHA------------PKEVVEQVMPFVDHALVDLKSIDPRVHES 199 >gi|330830319|ref|YP_004393271.1| pyruvate formate-lyase 2-activating enzyme [Aeromonas veronii B565] gi|328805455|gb|AEB50654.1| Pyruvate formate-lyase 2-activating enzyme [Aeromonas veronii B565] Length = 298 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G +D L D I E+ G L+GGEP +Q D L+ G AVE+ Sbjct: 100 GRDETLDTLMDTILRDRPFFERSGGGVTLSGGEPFMQPDFAAALLARCKAEGLHTAVES 158 >gi|307824811|ref|ZP_07655034.1| Radical SAM domain protein [Methylobacter tundripaludum SV96] gi|307734169|gb|EFO05023.1| Radical SAM domain protein [Methylobacter tundripaludum SV96] Length = 463 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 54/143 (37%), Gaps = 46/143 (32%) Query: 28 RFSG--------CNLWSGREQDRLSAQCRFCDTDFVGIQGT--KGGRYNVDQLADLIEEQ 77 R +G CNL C +C + G KG ++ AD ++ Sbjct: 83 RLTGFYLFVSQECNL-----------ACSYC---YGDGGGEYRKGKMIMDERTADNFIDK 128 Query: 78 WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR--------GFEI--AVETNGTIE---- 123 +IT + G GGEPLL ++PLIQ + R G + TNGT+ Sbjct: 129 FITDQNPGYLINFFGGEPLL--NLPLIQKIIDRVRAKTEPLGIRTVFNMTTNGTVWSSKI 186 Query: 124 ---PPQGIDWICVS---PKAGCD 140 + ID + VS PK D Sbjct: 187 ADFVSKNIDTLTVSLDGPKDIND 209 >gi|315231123|ref|YP_004071559.1| radical SAM domain heme biosynthesis protein [Thermococcus barophilus MP] gi|315184151|gb|ADT84336.1| radical SAM domain heme biosynthesis protein [Thermococcus barophilus MP] Length = 535 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 29/105 (27%) Query: 28 RFSG-----------CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 R +G CNL +C+ C + ++ + +L+E+ Sbjct: 123 RLAGPFLIVWNFTNMCNL-----------RCQHC---YQRADKPLSSELSLKEKLNLVEQ 168 Query: 77 QWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 G L+GGEP + + +++ L+ RG +V TNG Sbjct: 169 LDKAGVAA---VALSGGEPTIHPHFLRIVRELSNRGIHTSVATNG 210 >gi|162448131|ref|YP_001621263.1| ribonucleoside-triphosphate reductase activating, anaerobic [Acholeplasma laidlawii PG-8A] gi|161986238|gb|ABX81887.1| ribonucleoside-triphosphate reductase activating, anaerobic [Acholeplasma laidlawii PG-8A] Length = 172 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 27/97 (27%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ--LADLIEEQWITGE 82 VF GCNL +C C + +D+ L +L E + Sbjct: 29 VF--TQGCNL-----------RCPGC---------HNPSTHALDEGKLIELTEIRKKWKR 66 Query: 83 KEGRY-CVLTGGEPLLQVD--VPLIQALNKRGFEIAV 116 + ++GGEP LQ + + LI+ ++ G ++ + Sbjct: 67 NPLLHGITISGGEPFLQPEPVLELIKMAHEDGLDVNI 103 >gi|158337693|ref|YP_001518869.1| hypothetical protein AM1_4577 [Acaryochloris marina MBIC11017] gi|158307934|gb|ABW29551.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 324 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 14/100 (14%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R +A+C FCD G + D + +E+ G +Y TGGEPLL+ DV Sbjct: 13 RCNARCHFCD----IWALDPGKEADFDTIEHNLEDLKRLG---VKYVDFTGGEPLLRTDV 65 Query: 102 -PLIQALNKRGFEIAVETNG------TIEPPQGIDWICVS 134 + Q + GF ++ TN E +D++ S Sbjct: 66 GRIYQTAKQLGFYTSMTTNTILYLKKAHEVRGLVDFLNFS 105 >gi|304437610|ref|ZP_07397565.1| molybdenum cofactor biosynthesis protein A [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369423|gb|EFM23093.1| molybdenum cofactor biosynthesis protein A [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 331 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 26/114 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90 CNL +CR+C + G K R+ +V +++ + + R L Sbjct: 20 CNL-----------RCRYC----MPAHGVKKLRHADVLTYEEILRDVRVLAALGVRKVRL 64 Query: 91 TGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134 TGGEPL++ D+ L++ L + G E +A+ TNG + G+D + +S Sbjct: 65 TGGEPLVRRDITRLVRGLKEIPGIETVALTTNGVLLGTMMDELLDAGLDAVNLS 118 >gi|297624979|ref|YP_003706413.1| molybdenum cofactor biosynthesis protein A [Truepera radiovictrix DSM 17093] gi|297166159|gb|ADI15870.1| molybdenum cofactor biosynthesis protein A [Truepera radiovictrix DSM 17093] Length = 336 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 13/102 (12%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R + +C +CD G +V +A ++E G + R+ TGGEPLL+ ++ Sbjct: 33 RCNFRCTYCD-PLGLGHADPVGTLSVQDVAHVLEAAVGLGMRSVRF---TGGEPLLRREL 88 Query: 102 PLIQALNKR-GFE-IAVETNGTI-------EPPQGIDWICVS 134 P + A KR G E +A+ TN T+ G+D + +S Sbjct: 89 PEMIACAKRLGVEDVAITTNATLLERRLDALLAAGLDRVNIS 130 >gi|269137809|ref|YP_003294509.1| putative pyruvate-formate lyase-activating enzyme [Edwardsiella tarda EIB202] gi|267983469|gb|ACY83298.1| putative pyruvate-formate lyase-activating enzyme [Edwardsiella tarda EIB202] gi|304557864|gb|ADM40528.1| Pyruvate formate-lyase activating enzyme [Edwardsiella tarda FL6-60] Length = 299 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118 G V+++ E ++ G L+GGEP +Q + L++ ++ G AVET Sbjct: 101 GEALAVEEILRQAERDRPFYQRSGGGITLSGGEPFMQPTLAETLLRRCHQSGIHTAVET 159 >gi|239927460|ref|ZP_04684413.1| hypothetical protein SghaA1_04494 [Streptomyces ghanaensis ATCC 14672] gi|291435802|ref|ZP_06575192.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291338697|gb|EFE65653.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 340 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 38 CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + + + L R + + TN + + +D SP + I G Q+ Sbjct: 80 GGEPLMHPQIDEITRQLVARRKYVFLCTN-ALLLRKKMDLFTPSPYFAFAVHIDGLQK 136 >gi|188992759|ref|YP_001904769.1| molybdenum cofactor biosynthesis protein A [Xanthomonas campestris pv. campestris str. B100] gi|226707392|sp|B0RTE0|MOAA_XANCB RecName: Full=Molybdenum cofactor biosynthesis protein A gi|167734519|emb|CAP52729.1| Molybdenum cofactor biosynthesis protein A,probable [Xanthomonas campestris pv. campestris] Length = 339 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 57/143 (39%), Gaps = 22/143 (15%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 +C +C D R + DQL L+ G + R LTGGEPLL+ ++P Sbjct: 32 RCGYCMPADRVPDDYGLDADQRLSFDQLETLVRAFVAVGVTKLR---LTGGEPLLRKNLP 88 Query: 103 -LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVSPKAGCDLKIK----GGQE 148 LIQ L G E +A+ TNG + Q + I VS A + G E Sbjct: 89 VLIQRLAAIEGIEDLALTTNGALLARQAVALRQAGLRRITVSMDALEPALFRQMSGGRGE 148 Query: 149 LKLVFPQVNVSPENYIGFDFERF 171 + V ++ GFD + Sbjct: 149 IDQVL--AGIAAAEQAGFDRLKI 169 >gi|307243155|ref|ZP_07525328.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678] gi|306493416|gb|EFM65396.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678] Length = 473 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 15/101 (14%) Query: 28 RF-SGCNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 R GCN+ D SA +C+ C + G + ++L D+IE+ G Sbjct: 108 RLEHGCNVPWLILMDPTSACNLKCKGC---WAAEYG-HNQSLSFEELDDIIEQGKKLGIY 163 Query: 84 EGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122 Y TGGEPL+ + + L ++ + +A TNGT+ Sbjct: 164 FYMY---TGGEPLMRKKDLIRLCDK-HRDCYFLAF-TNGTL 199 >gi|269122292|ref|YP_003310469.1| glycyl-radical enzyme activating protein family [Sebaldella termitidis ATCC 33386] gi|268616170|gb|ACZ10538.1| glycyl-radical enzyme activating protein family [Sebaldella termitidis ATCC 33386] Length = 304 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 64/195 (32%), Gaps = 27/195 (13%) Query: 30 SGC--NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 SGC N + + C + TKG ++L+ + + G Sbjct: 77 SGCIINREACTNLAEMPDICPY------DAYETKGTEMTAEELSSKLIRDMDFYKTSGGG 130 Query: 88 CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI------EPPQGIDWICVSPKAGC 139 +GGEP LQ + + L A++T I + + ID + + KA Sbjct: 131 VTFSGGEPCLQDEFVYETAKLLKNHNIHTALDTAAHIKKEKLAKILEVIDLVLLDIKAFD 190 Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFE-RFSLQPMDGPFLEENTNLAISYCFQNPKW 198 L + G +K N I D R + P L++ + + Sbjct: 191 PLIHEKGTLVKNDLILKNAKMIADIKKDMLVRIVIIPGMNDDLDDIRKR-LEFVKSLGN- 248 Query: 199 RLSV-QT-----HKF 207 SV QT HKF Sbjct: 249 --SVKQTDILKYHKF 261 >gi|217969195|ref|YP_002354429.1| radical SAM protein [Thauera sp. MZ1T] gi|217506522|gb|ACK53533.1| Radical SAM domain protein [Thauera sp. MZ1T] Length = 476 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 51/142 (35%), Gaps = 48/142 (33%) Query: 21 GRVA-------VFCRF----------SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 GR A F RF +GCNL C +C D D + + Sbjct: 84 GRPAGAGTLAHTFERFPLTTVVLNVNTGCNL-----------SCTYCYKEDLD----KPS 128 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQ--------ALNKRG 111 G + D IE E RY V GGEPL ++PLI+ + G Sbjct: 129 AGRKMAFGTARDAIEMMLRESPDEPRYNVVFFGGEPL--SNLPLIKDVVAYCEARFAELG 186 Query: 112 FEI--AVETNGTIEPPQGIDWI 131 ++ + TN T+ IDW+ Sbjct: 187 KQVDFVMTTNATLLADDTIDWL 208 >gi|15645387|ref|NP_207561.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori 26695] gi|3024137|sp|P56414|MOAA_HELPY RecName: Full=Molybdenum cofactor biosynthesis protein A gi|2313896|gb|AAD07817.1| molybdenum cofactor biosynthesis protein A (moaA) [Helicobacter pylori 26695] Length = 321 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 56/165 (33%), Gaps = 24/165 (14%) Query: 46 QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102 +C++C T +D + + ++ G K+ R +TGGEPLL+ Sbjct: 24 RCQYCMPATPLNFFDNE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDE 78 Query: 103 LIQALNKRGFEIA--VETNGTIEPPQGID-------WICV---SPKAGCDLKIKGGQELK 150 I L+ E+ + TNG + D + V S K+ LKI LK Sbjct: 79 FIAKLHAYNKEVELVLSTNGFLLKKMAKDLKNAGLAQVNVSLDSLKSDRVLKISQKDALK 138 Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 + S + + + +E L + Y Sbjct: 139 NTLEGIEESLKVGLKLKLNTVV---IKSVNDDEILEL-LEYAKNR 179 >gi|117928855|ref|YP_873406.1| GTP cyclohydrolase subunit MoaA [Acidothermus cellulolyticus 11B] gi|166217236|sp|A0LVG0|MOAA_ACIC1 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|117649318|gb|ABK53420.1| GTP cyclohydrolase subunit MoaA [Acidothermus cellulolyticus 11B] Length = 362 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 19/109 (17%) Query: 41 DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 DR + +CR+C + +++ + G ++ R LTGGEP Sbjct: 22 DRCNMRCRYC-MPREIFGPNFTFLPRSELLTFEEITRIAAAFIRAGVRKIR---LTGGEP 77 Query: 96 LLQVDVP-LIQALNKRG--FEIAVETNGTIEP-------PQGIDWICVS 134 LL+ D+P L+ L ++A+ TNG++ G+ + VS Sbjct: 78 LLRADLPRLVAMLADLPDVHDLALTTNGSLLARYARPLRDAGLRRVTVS 126 >gi|305665849|ref|YP_003862136.1| Radical SAM [Maribacter sp. HTCC2170] gi|88710620|gb|EAR02852.1| Radical SAM [Maribacter sp. HTCC2170] Length = 441 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 12/82 (14%) Query: 31 GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G D C C T + T G ++D++ +++ + Sbjct: 58 GCPYDCGLCPDHEQHSCLTVVEVTDRCNLTCPTCYASSSPTYGRHRSLDEIKKMLD-TIV 116 Query: 80 TGEKEGRYCVLTGGEPLLQVDV 101 E E ++GGEP + + Sbjct: 117 KNEGEPDVVQISGGEPTIHPNF 138 >gi|258653371|ref|YP_003202527.1| pyruvate formate-lyase activating enzyme [Nakamurella multipartita DSM 44233] gi|258556596|gb|ACV79538.1| pyruvate formate-lyase activating enzyme [Nakamurella multipartita DSM 44233] Length = 267 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 24/105 (22%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ F SGC + +C +C DT + G +D++ I Sbjct: 39 RLTYF--LSGC-----------ALRCLYCQNPDTWRLPDGMPTG----IDEVKARIFRYA 81 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETNG 120 G ++GGEPLLQ L + L + G A++T+G Sbjct: 82 PVLRATGGGLTVSGGEPLLQTAF-LGRMLRYAKELGLHTAIDTSG 125 >gi|15679546|ref|NP_276663.1| molybdenum cofactor biosynthesis protein A [Methanothermobacter thermautotrophicus str. Delta H] gi|2622671|gb|AAB86024.1| molybdenum cofactor biosynthesis MoaA [Methanothermobacter thermautotrophicus str. Delta H] Length = 316 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 29/126 (23%) Query: 21 GRVAVFCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77 GR + R S CN+ C +C + G + + L Sbjct: 19 GRPVMSLRLSITGRCNV-----------NCIYC---HRDGMTSSRGELSAADIEKLCRVA 64 Query: 78 WITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFE-IAVETNGTI-------EPPQGI 128 G + R L+GGEPL++ D+ +++ +N GF I++ TNGT+ G+ Sbjct: 65 SDLGVGKIR---LSGGEPLIRDDIVEIVERINNIGFRDISITTNGTLLEGYSAALSEAGL 121 Query: 129 DWICVS 134 D + VS Sbjct: 122 DRVNVS 127 >gi|89072729|ref|ZP_01159294.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium sp. SKA34] gi|89051549|gb|EAR57003.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium sp. SKA34] Length = 246 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C +C DT G V++L + Sbjct: 25 VF--LQGC-----------LMRCLYCHNRDT----WDTHGGREATVEELMHEAKSYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A G ++TNG Sbjct: 68 NSSGGGVTASGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNG 108 >gi|296158258|ref|ZP_06841090.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. Ch1-1] gi|295891594|gb|EFG71380.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. Ch1-1] Length = 369 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 59/150 (39%), Gaps = 29/150 (19%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D D+ + + + +++LA + + + LTGG Sbjct: 45 DRCNFRCVYCMPRSVFDKDYTFLPHSALLSFEEIERLARIFVAHGVEKIR------LTGG 98 Query: 94 EPLLQVDVP-LIQAL------NKRGFEIAVETNGTI-------EPPQGIDWICVSPKAGC 139 EPLL+ ++ LI L R ++ + TNG++ G+ + VS A Sbjct: 99 EPLLRKNLEFLIDRLAHLTTPAGRPLDLTLTTNGSLLERKARSLKDAGLTRVTVSLDALD 158 Query: 140 DLKIKGGQELKLVFPQV--NVSPENYIGFD 167 D + + V ++ + +G Sbjct: 159 DTLFRRMNDADFAVADVLDGIAAAHAVGLA 188 >gi|288574545|ref|ZP_06392902.1| molybdenum cofactor biosynthesis protein A [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570286|gb|EFC91843.1| molybdenum cofactor biosynthesis protein A [Dethiosulfovibrio peptidovorans DSM 11002] Length = 325 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 13/112 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +CR+C + + + + L + G K R+ TG Sbjct: 14 NYVRISVTDRCNFRCRYCMPSRGVPTLSHEEIMSYEDILFLAKTLSSMGVKRLRF---TG 70 Query: 93 GEPLLQVD-VPLIQALNKR--GFEIAVETNGTIEPP-------QGIDWICVS 134 GEP ++ D VP ++ L +AV TNG++ P G+D I VS Sbjct: 71 GEPFVRKDFVPFLERLKSELPDLAVAVTTNGSLVKPWANRLGNLGLDGISVS 122 >gi|221636246|ref|YP_002524122.1| radical SAM domain protein [Thermomicrobium roseum DSM 5159] gi|221157912|gb|ACM07030.1| radical SAM domain protein [Thermomicrobium roseum DSM 5159] Length = 365 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 7/101 (6%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104 C C ++ LI+E Y + GGEPLL+ D V L+ Sbjct: 27 NCVHC---LSSSGKRASDELTTEEAKRLIDEW---AALRVFYINVGGGEPLLRPDFVELM 80 Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 + RG + TNG++ DWI +P + + G Sbjct: 81 EYAIARGIGVKFSTNGSLIDEAVADWIARTPYLDVQISLDG 121 >gi|169350284|ref|ZP_02867222.1| hypothetical protein CLOSPI_01028 [Clostridium spiroforme DSM 1552] gi|169293067|gb|EDS75200.1| hypothetical protein CLOSPI_01028 [Clostridium spiroforme DSM 1552] Length = 298 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 3/78 (3%) Query: 46 QCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVP 102 C C + F +G +D++ D+ + E+ G ++GGE + Q Sbjct: 86 GCLQCVSSCFNNALSHEGKYQEIDEIVDICLQDQDFYEESGGGVTISGGEGMAQPKFLKE 145 Query: 103 LIQALNKRGFEIAVETNG 120 L+ L K +A+ET G Sbjct: 146 LVTKLKKHNLHVAIETTG 163 >gi|153811590|ref|ZP_01964258.1| hypothetical protein RUMOBE_01982 [Ruminococcus obeum ATCC 29174] gi|149832331|gb|EDM87416.1| hypothetical protein RUMOBE_01982 [Ruminococcus obeum ATCC 29174] Length = 298 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 8/91 (8%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 G Y+V++L++L+ E +GGEP++Q ++ L L + +A ET Sbjct: 104 GSYYSVEELSELLLRDRRLYEISEGGVTFSGGEPMMQAEILYDLCSRLQEEHISVAFETA 163 Query: 120 GTIEP------PQGIDWICVSPKAGCDLKIK 144 + +D V K + K K Sbjct: 164 LAFPWKVIHRMTECVDLFLVDFKIFDNEKHK 194 >gi|187924899|ref|YP_001896541.1| molybdenum cofactor biosynthesis protein A [Burkholderia phytofirmans PsJN] gi|187716093|gb|ACD17317.1| molybdenum cofactor biosynthesis protein A [Burkholderia phytofirmans PsJN] Length = 369 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 27/170 (15%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + + +++ L G ++ R LTGGE Sbjct: 45 DRCNFRCVYCMPRAVFDKDYTFLPHS--ALLSFEEIERLARLFVAHGVEKIR---LTGGE 99 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTI-------EPPQGIDWICVSPKAGCD 140 PLL+ ++ LI+ L + R ++ + TNG++ G+ + VS A D Sbjct: 100 PLLRKNLEFLIERLAQLTTPAGRPLDLTLTTNGSLLERKARSLKDAGLTRVTVSLDALDD 159 Query: 141 LKIKGGQELKLVFPQV--NVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 + + V ++ + +G + ++ G E +A Sbjct: 160 TLFRRMNDADFAVGDVLDGIAAAHAVGLAPVKVNMVVKRGTNDSEIVPMA 209 >gi|302557111|ref|ZP_07309453.1| hopanoid biosynthesis associated radical SAM protein HpnH [Streptomyces griseoflavus Tu4000] gi|302474729|gb|EFL37822.1| hopanoid biosynthesis associated radical SAM protein HpnH [Streptomyces griseoflavus Tu4000] Length = 340 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 38 CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + +++ L R + + TN + + +D SP + I G +E Sbjct: 80 GGEPLMHPQIDEIVRQLVARRKYVFLCTN-ALLMRKKMDRFTPSPYFAFAVHIDGLRE 136 >gi|269120548|ref|YP_003308725.1| glycyl-radical enzyme activating protein family [Sebaldella termitidis ATCC 33386] gi|268614426|gb|ACZ08794.1| glycyl-radical enzyme activating protein family [Sebaldella termitidis ATCC 33386] Length = 273 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 47/148 (31%), Gaps = 52/148 (35%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC------------- 50 IF +L G G VF F GC L +C +C Sbjct: 6 IFNIQRYSLNDGSGIRT---MVF--FKGCRL-----------RCPWCSNPESQSSKIEIM 49 Query: 51 ----------------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 D D G G Y +D+L + + + L+GGE Sbjct: 50 INKEKKKKYEQYVGSVDEDPTGTYEKSGKWYKLDELMKEVLKDEVFFNASKGGVTLSGGE 109 Query: 95 PLLQVD--VPLIQALNKRGFEIAVETNG 120 L Q + + ++ L + G AVET G Sbjct: 110 ILEQGEFVLEFLKELKEHGINTAVETCG 137 >gi|114326910|ref|YP_744067.1| radical SAM superfamily protein [Granulibacter bethesdensis CGDNIH1] gi|114315084|gb|ABI61144.1| radical SAM superfamily protein [Granulibacter bethesdensis CGDNIH1] Length = 331 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 30/97 (30%), Gaps = 9/97 (9%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L R + C +C L +L+ + TGG Sbjct: 32 LAQVVVTRRCNLACGYC--------NEYDTFSPPVPLPELLARIDHLAKLRTASITFTGG 83 Query: 94 EPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGID 129 EPLL I+A + G + + TNG ID Sbjct: 84 EPLLHPQLDEAIRAARRHGMIVTMITNGFRLTKAWID 120 >gi|210623576|ref|ZP_03293902.1| hypothetical protein CLOHIR_01852 [Clostridium hiranonis DSM 13275] gi|210153446|gb|EEA84452.1| hypothetical protein CLOHIR_01852 [Clostridium hiranonis DSM 13275] Length = 246 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 27/169 (15%) Query: 8 EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F T+ G G + VF GC L +C++C DT G Sbjct: 10 ETFGTVDGPGIRYI----VF--LQGCPL-----------RCKYCHNRDT----WNKNGGT 48 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121 +++ + E G +GGE Q L + K G ++T+G Sbjct: 49 EKTAEEVVQDALKYKTYMEFSGGGLTASGGEATAQPEFLYELFKEAKKNGLNTCLDTSGC 108 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 + + ++ DLK ++ K + S + + E+ Sbjct: 109 TKATDIAHILELTDTVLLDLKHLIPEDAKSLAGIDINSAIEFAKYLDEK 157 >gi|241889395|ref|ZP_04776696.1| pyruvate formate-lyase 1-activating enzyme [Gemella haemolysans ATCC 10379] gi|241863938|gb|EER68319.1| pyruvate formate-lyase 1-activating enzyme [Gemella haemolysans ATCC 10379] Length = 265 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 21/102 (20%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL-ADLIEEQWIT 80 VF F GC +C++C DT +Q VDQL ++++ + Sbjct: 39 VF--FQGC-----------MLRCKYCHNPDT--WKMQNPDAKVMTVDQLTKEIVKYRDFF 83 Query: 81 GEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 +G ++GGE LLQ+D + L + L + V+T G Sbjct: 84 EASDGGGVTVSGGESLLQIDFILALFRKLKELDINTCVDTCG 125 >gi|320530476|ref|ZP_08031534.1| pyruvate formate-lyase 1-activating enzyme [Selenomonas artemidis F0399] gi|320137309|gb|EFW29233.1| pyruvate formate-lyase 1-activating enzyme [Selenomonas artemidis F0399] Length = 252 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 43/125 (34%), Gaps = 25/125 (20%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 E F ++ G G VF GC +C++C + G Sbjct: 11 TESFGSVDGPGIRFI----VFV--QGC-----------RYRCQYCHNPETW-ETEGGYEA 52 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG--- 120 +++ K ++GGEPLLQ+D L + +G AV+T G Sbjct: 53 TPEEIFRQALRYRPY-WKNTGGITVSGGEPLLQLDFVTELFRLAKVKGVNTAVDTAGEPF 111 Query: 121 TIEPP 125 T P Sbjct: 112 THAQP 116 >gi|307130799|ref|YP_003882815.1| pyruvate formate lyase activating enzyme 1 [Dickeya dadantii 3937] gi|306528328|gb|ADM98258.1| pyruvate formate lyase activating enzyme 1 [Dickeya dadantii 3937] Length = 246 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 58/179 (32%), Gaps = 40/179 (22%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V++L + G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKEVVTYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI----EPPQGIDWICVSPKAGC 139 +GGE +LQ + +A +++G ++TNG + + + Sbjct: 72 GGVTASGGEAILQAEFVRDWFRACHEQGINTCLDTNGFVRRYDPVIDELLDVT------- 124 Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198 DL + ++L Q V N+ DF R+ + N I Y P W Sbjct: 125 DLVMLDLKQLNDEVHQNLVGVSNHRTLDFARY--------LAKRNQRTWIRYVVV-PGW 174 >gi|289667851|ref|ZP_06488926.1| molybdenum cofactor biosynthesis protein A [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 343 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 16/102 (15%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 +C +C D R + DQL L+ G + R LTGGEPLL+ D+P Sbjct: 36 RCGYCMPADRVPDDYGFDSQQRLSFDQLETLVRAFVSVGVTKVR---LTGGEPLLRRDLP 92 Query: 103 -LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVS 134 LI L G E +A+ TNGT+ Q + I VS Sbjct: 93 SLIARLGAIEGIEDLALTTNGTLLARQAVALRQAGLRRITVS 134 >gi|210620573|ref|ZP_03292121.1| hypothetical protein CLOHIR_00064 [Clostridium hiranonis DSM 13275] gi|210155287|gb|EEA86293.1| hypothetical protein CLOHIR_00064 [Clostridium hiranonis DSM 13275] Length = 298 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 46/143 (32%), Gaps = 48/143 (33%) Query: 24 AVFCRFSGCNLWSGREQDRLS-----------AQCRFC---------------DTDFVGI 57 VF F GC L + S ++C +C D + Sbjct: 23 TVF--FKGCPLRCEWCSNPESQIKNVQILHDQSKCSYCLSCVVTCPNGAITHEDNKIIIN 80 Query: 58 Q------------------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 + +G ++++ D+ + E+ G ++GGE + Q Sbjct: 81 EDKCVGCLTCVNSCPNRALSYEGDYQTIEEIVDICMQDIDFYEESGGGVTISGGEGMSQP 140 Query: 100 DV--PLIQALNKRGFEIAVETNG 120 D LI L K +A+ET G Sbjct: 141 DFLKKLIAELKKNSVHVAIETTG 163 >gi|172060044|ref|YP_001807696.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria MC40-6] gi|171992561|gb|ACB63480.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria MC40-6] Length = 370 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 36/161 (22%) Query: 28 RFSGCNLWSGREQ--DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF+ L R DR + +C +C D D+ + + +++ + + ++ Sbjct: 31 RFAR-PLRDLRISVTDRCNFRCVYCMPRDVFDKDYPFLPHS--ALLTHEEI-ERVARLFV 86 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------P 125 E +TGGEPLL+ ++ LI+ L + R ++ + TNG++ Sbjct: 87 AHGVEK--IRITGGEPLLRKNLEFLIERLARLTTHDGRPLDLTLTTNGSLLARKARALKD 144 Query: 126 QGIDWICVS--------PKAGCDLKIKGGQELKLVFPQVNV 158 G+ + VS K D L +F V Sbjct: 145 AGLTRVTVSLDALDDTLFKRMNDADFASADVLDGIFAAQAV 185 >gi|21673256|ref|NP_661321.1| AslB/AtsB family protein [Chlorobium tepidum TLS] gi|21646343|gb|AAM71663.1| AslB/AtsB family protein [Chlorobium tepidum TLS] Length = 336 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 20/95 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C + G +G ++D ++ + + + LT Sbjct: 8 CNL-----------DCAYC---YEGGGNGQGEMMDLDTALRALD--LVAASNQPFHVQLT 51 Query: 92 GGEPLLQVDVPL--IQALNKRGFE--IAVETNGTI 122 GGEPLL ++ ++ + A++TNG + Sbjct: 52 GGEPLLAGELVFRILEYIRNNNLPATTAIQTNGVL 86 >gi|115351039|ref|YP_772878.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria AMMD] gi|115281027|gb|ABI86544.1| GTP cyclohydrolase subunit MoaA [Burkholderia ambifaria AMMD] Length = 370 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 36/161 (22%) Query: 28 RFSGCNLWSGREQ--DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF+ L R DR + +C +C D D+ + + +++ + + ++ Sbjct: 31 RFAR-PLRDLRISVTDRCNFRCVYCMPRDVFDKDYPFLPHS--ALLTHEEI-ERVARLFV 86 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------P 125 E +TGGEPLL+ ++ LI+ L + R ++ + TNG++ Sbjct: 87 AHGVEK--IRITGGEPLLRKNLEFLIERLARLTTHDGRPLDLTLTTNGSLLARKARALKD 144 Query: 126 QGIDWICVS--------PKAGCDLKIKGGQELKLVFPQVNV 158 G+ + VS K D L +F V Sbjct: 145 AGLTRVTVSLDALDDTLFKRMNDADFASADVLDGIFAAQAV 185 >gi|283853875|ref|ZP_06371090.1| Methyltransferase type 11 [Desulfovibrio sp. FW1012B] gi|283570733|gb|EFC18778.1| Methyltransferase type 11 [Desulfovibrio sp. FW1012B] Length = 795 Score = 44.6 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 27/92 (29%), Gaps = 19/92 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC + I E G R LT Sbjct: 89 CNLAC--------RHCLFC------SGPAAARELATETGLARIAEARNLG---CRVFALT 131 Query: 92 GGEPLLQVDVP--LIQALNKRGFEIAVETNGT 121 GGEP L L AL + V TNGT Sbjct: 132 GGEPFLHPGFEALLDAALEDPAAHVVVLTNGT 163 >gi|226947765|ref|YP_002802856.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto] gi|226844545|gb|ACO87211.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto] Length = 413 Score = 44.6 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 23/121 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CD + ++ + +++ E + +T Sbjct: 102 CNLHCKHCMVNADK----CDIK---------ENFTTKEIINALDKII---EAKPEAITIT 145 Query: 92 GGEPLLQVD-VPLIQALNKR-GFEIAVETNGTIEPPQGIDWI--CVSPKAGCDLKIKGGQ 147 GGEPL++ D + +I+ L +I + TN T+ I+ I CVS D+ I G Sbjct: 146 GGEPLVRPDFIKIIKYLKNNYNGKIGLMTNATLITENNINDIISCVS---SIDISIDGVD 202 Query: 148 E 148 E Sbjct: 203 E 203 >gi|237807654|ref|YP_002892094.1| pyruvate formate-lyase activating enzyme [Tolumonas auensis DSM 9187] gi|237499915|gb|ACQ92508.1| pyruvate formate-lyase activating enzyme [Tolumonas auensis DSM 9187] Length = 248 Score = 44.6 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C++C DT G VD L + + G Sbjct: 27 FQGC-----------LMRCKYCHNRDT----WDTEGGKEVTVDDLMKDLLAYRHFIKASG 71 Query: 86 RYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 +GGE LQ + +A G ++TNG Sbjct: 72 GGVTASGGEATLQKEFVTEWFKACKAEGIHTCLDTNG 108 >gi|169350526|ref|ZP_02867464.1| hypothetical protein CLOSPI_01294 [Clostridium spiroforme DSM 1552] gi|169292846|gb|EDS74979.1| hypothetical protein CLOSPI_01294 [Clostridium spiroforme DSM 1552] Length = 353 Score = 44.6 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 9/87 (10%) Query: 44 SAQCRF-CDTDFVGIQGTK----GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 + +C F C +V + G + + D+ ++ G + +TGGEPLL Sbjct: 40 TPRCNFNCKMCYVHLSEKDIPKYGKELSAKKWIDIAKQAKEAGTT---WLCITGGEPLLH 96 Query: 99 VDV-PLIQALNKRGFEIAVETNGTIEP 124 + + L+K GF I ++TN ++ P Sbjct: 97 PEFGKIYTQLSKMGFFITLQTNASLIP 123 >gi|146297184|ref|YP_001180955.1| radical SAM domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410760|gb|ABP67764.1| Radical SAM domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 246 Score = 44.6 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 50/144 (34%), Gaps = 22/144 (15%) Query: 50 CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQAL 107 CD K + + + + +I+E ++GGEP L +D L I Sbjct: 20 CDICCFFCSLHKNEKMSKELIVKIIDEAKSVNSISTFG--ISGGEPFLYLDELLFAISLA 77 Query: 108 NKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD 167 K GF+ TNG + VSPKA ++ + ELK + +S + D Sbjct: 78 TKSGFKTTCTTNG---------FWAVSPKATVEIMM----ELK----KAGLS-HLSVSID 119 Query: 168 FERFSLQPMDGPFLEENTNLAISY 191 P+D I Sbjct: 120 EFHLKFVPVDNIKRILKVARQIDL 143 >gi|125972753|ref|YP_001036663.1| radical SAM family protein [Clostridium thermocellum ATCC 27405] gi|256005672|ref|ZP_05430629.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360] gi|281416952|ref|ZP_06247972.1| Radical SAM domain protein [Clostridium thermocellum JW20] gi|125712978|gb|ABN51470.1| Radical SAM [Clostridium thermocellum ATCC 27405] gi|255990360|gb|EEU00485.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360] gi|281408354|gb|EFB38612.1| Radical SAM domain protein [Clostridium thermocellum JW20] gi|316941009|gb|ADU75043.1| Radical SAM domain protein [Clostridium thermocellum DSM 1313] Length = 445 Score = 44.6 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 14/82 (17%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQ----LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 CRFC + G K R + + D+I E E TGGEPLL ++P Sbjct: 127 CRFC---YAGCTKVKKNRELDKEGFKKVLDIIR-----YEAEVPSVSFTGGEPLLNKNLP 178 Query: 103 -LIQ-ALNKRGFEIAVETNGTI 122 LI+ A G + + TNGT+ Sbjct: 179 ELIKYASKANGMRVNLITNGTL 200 >gi|322384880|ref|ZP_08058541.1| synthesis of sporulation killing factor A-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150349|gb|EFX43851.1| synthesis of sporulation killing factor A-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 365 Score = 44.6 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 18/145 (12%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL ++ C C + V+Q ++ E G + T Sbjct: 108 CNLDCTFCKNSF---CPVC----KRFEERDEAELTVEQWKRILTELSHFGTSA---VLFT 157 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDW----ICVSPKAGCDLKIKGG 146 GGEP + LI + G + TNG + Q I V+ K + I+ Sbjct: 158 GGEPTRYPYIHELIDFSIELGMATNLHTNGLVPLKQVPSVLGFHITVTSKRNLNKIIQNY 217 Query: 147 QELKLVFPQVNVSPENYIGFDFERF 171 +K +V + ++++ D ++ Sbjct: 218 CNIK---DRVTLLVDDHLFSDVKQI 239 >gi|147920772|ref|YP_685422.1| anaerobic ribonucleoside-triphosphate reductase (glycyl-dependent) activating enzyme [uncultured methanogenic archaeon RC-I] gi|56295595|emb|CAH04836.1| pyruvate formate-lyase activating enzyme [uncultured archaeon] gi|110620818|emb|CAJ36096.1| anaerobic ribonucleoside-triphosphate reductase (glycyl-dependent) activating enzyme [uncultured methanogenic archaeon RC-I] Length = 262 Score = 44.6 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 20/104 (19%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 + VF R GC +C +C + ++ G + +++ I++ Sbjct: 28 VLTVFFR--GCPF-----------RCPYC-ANPQFLEPDSGEPTDTERVIAEIDK----A 69 Query: 82 EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV--ETNGTIE 123 V +GGEPL+Q A + +G + V +TNG Sbjct: 70 RNFIDGVVFSGGEPLMQFAAFKTIAAHAKGLGLLVGAQTNGAYP 113 >gi|320160976|ref|YP_004174200.1| hypothetical protein ANT_15720 [Anaerolinea thermophila UNI-1] gi|319994829|dbj|BAJ63600.1| hypothetical protein ANT_15720 [Anaerolinea thermophila UNI-1] Length = 471 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 8/81 (9%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R + QC C + ++ +I++ W G + V TGGEP L+ D+ Sbjct: 146 RCNNQCSHC----YNARSRNFPELPTEKWKTIIQKLWDIG---IPHLVFTGGEPTLRHDL 198 Query: 102 P-LIQALNKRGFEIAVETNGT 121 P LI+ K G + TNGT Sbjct: 199 PDLIEFAEKIGMITGLNTNGT 219 >gi|319957346|ref|YP_004168609.1| radical sam domain protein [Nitratifractor salsuginis DSM 16511] gi|319419750|gb|ADV46860.1| Radical SAM domain protein [Nitratifractor salsuginis DSM 16511] Length = 376 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 18/101 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR C + + + + I E G R+ + + Sbjct: 33 CNL-----------ACRHC---YSYADPNSEDFLSTEFILGAIPELLKAG---VRFVIFS 75 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GGEPL++ D+ + A+ + G + TNG + +D I Sbjct: 76 GGEPLIRKDIFTIADAMRRAGIITYLSTNGLYVSEKNVDRI 116 >gi|302871428|ref|YP_003840064.1| molybdenum cofactor biosynthesis protein A [Caldicellulosiruptor obsidiansis OB47] gi|302574287|gb|ADL42078.1| molybdenum cofactor biosynthesis protein A [Caldicellulosiruptor obsidiansis OB47] Length = 308 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 8/115 (6%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + C +C T + + + + + ++ +I G ++ R +TGGEP L+ D Sbjct: 18 DRCNFFCMYCRTKDLCYE--RADQLSKGEIFRIISAFKKLGIQKLR---ITGGEPFLRDD 72 Query: 101 V-PLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153 + +I+ + G E I + TNG ++ + I + SP ++ + + K F Sbjct: 73 IFEIIEFAHSIGIENINITTNGWLD-TEKIKKVIKSPLKSVNISLDTLDKKKYRF 126 >gi|77459199|ref|YP_348705.1| radical SAM family protein [Pseudomonas fluorescens Pf0-1] gi|77383202|gb|ABA74715.1| quinohemoprotein amine dehydrogenase unknown subunit [Pseudomonas fluorescens Pf0-1] Length = 477 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 35/132 (26%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR-YC 88 +GCNL C +C +KG + + + E + + Sbjct: 110 TGCNL-----------SCTYCY-KEDLTTPSKGVKMSFETAKASFEMLLKQAKNRDQVNL 157 Query: 89 VLTGGEPLLQVDVPLIQAL--------NKRGFEI--AVETNGTIEPPQGIDW-------I 131 V GGEPL + PLI+A+ + G +I ++ TNGT+ +DW + Sbjct: 158 VFFGGEPL--SNYPLIRAMVPYAEARAAQEGKKIDFSLTTNGTLLTEPMVDWLNEHRFGL 215 Query: 132 CVS---PKAGCD 140 VS PKA D Sbjct: 216 TVSMDGPKAMHD 227 >gi|225571359|ref|ZP_03780355.1| hypothetical protein CLOHYLEM_07457 [Clostridium hylemonae DSM 15053] gi|225159835|gb|EEG72454.1| hypothetical protein CLOHYLEM_07457 [Clostridium hylemonae DSM 15053] Length = 202 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 +V+++ +TGGEPL+Q+D L + L + G ++T+G Sbjct: 1 MSVEEVLQGFYSNLP--FYRSGGVTVTGGEPLMQMDFLTELFRDLKRHGVHTCIDTSG 56 >gi|158317459|ref|YP_001509967.1| radical SAM domain-containing protein [Frankia sp. EAN1pec] gi|158112864|gb|ABW15061.1| Radical SAM domain protein [Frankia sp. EAN1pec] Length = 335 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C R +V+ +EE + Sbjct: 38 CNL-----------SCTGCG-KIQHPASVLKQRMSVEDALAAVEECG------APVVAIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + ++ AL KR + + TNG + + + SP L I G +E Sbjct: 80 GGEPLMHPQIHEIVNALVKRKKFVILCTNG-LLLRKKLKNFTPSPYFTFVLHIDGLKE 136 >gi|148642712|ref|YP_001273225.1| pyruvate formate-lyase activating enzyme, PflA [Methanobrevibacter smithii ATCC 35061] gi|148551729|gb|ABQ86857.1| pyruvate formate-lyase activating enzyme, PflA [Methanobrevibacter smithii ATCC 35061] Length = 234 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 18/126 (14%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N+ + CR+C + + +++ I + V++G Sbjct: 16 NMSLVIFMSKCPLACRYC---HNAELLDDNTQLSFEEIKKEIND----AADFIDAVVISG 68 Query: 93 GEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGCDL-- 141 GEPL+Q D + +++ ++K G + ++T+G +D+I + KA + Sbjct: 69 GEPLVQSDAVIEILKYVHKLGLKTKLDTSGIYPDKLENILKLNILDFISLDVKAPFEKYR 128 Query: 142 KIKGGQ 147 K+ G Sbjct: 129 KVTGSN 134 >gi|269138270|ref|YP_003294970.1| pyruvate formate lyase II activase [Edwardsiella tarda EIB202] gi|267983930|gb|ACY83759.1| pyruvate formate lyase II activase [Edwardsiella tarda EIB202] Length = 252 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 52/156 (33%), Gaps = 26/156 (16%) Query: 25 VFCRFSGCNLWSGREQD-----------RLSAQCRFC-------DTDFVGIQGTKGGRYN 66 VF F GC + R +C C D G G Sbjct: 2 VF--FKGCPHRCPWCANPESISPAPQTVRREQRCLHCTPCLNDADECPSGAMERIGRTVT 59 Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTIEP 124 + QL + + + G L+GGE LLQ + L + G A+ET G Sbjct: 60 LAQLEAEVMKDVVFFRSSGGGVTLSGGEVLLQAAFATRFLTRLRRLGVHCALETAGDGPA 119 Query: 125 PQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 + + + + DLKI + + L+L P+ Sbjct: 120 SRLLPLASLCDEVLFDLKIMDAERSARLLRLNLPRA 155 >gi|152985021|ref|YP_001348665.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas aeruginosa PA7] gi|150960179|gb|ABR82204.1| coenzyme PQQ biosynthesis protein E [Pseudomonas aeruginosa PA7] Length = 370 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 15/112 (13%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C +G + ++ + G + + + Sbjct: 4 PLWLLAELTYRCPLQCPYCSNPLEF--AREGAELGTAEWIEVFRQARELGAAQLGF---S 58 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134 GGEPLL Q LI+A GF + T+G G+D + +S Sbjct: 59 GGEPLLRQDLAELIEAGRGLGFYTNLITSGIGLDEARLARFAEAGLDHVQIS 110 >gi|88705524|ref|ZP_01103234.1| Molybdenum cofactor biosynthesis protein A [Congregibacter litoralis KT71] gi|88700037|gb|EAQ97146.1| Molybdenum cofactor biosynthesis protein A [Congregibacter litoralis KT71] Length = 336 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 19/90 (21%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D FV K +++LA + + G ++ R LTGGEPL+ Sbjct: 26 DRCDFRCVYCMAEDMQFV----PKSEVLTLEELAQVAQAFVRLGVRKIR---LTGGEPLV 78 Query: 98 -QVDVPLIQALNK-RGFEIAVE----TNGT 121 + L++ L G E E TNG+ Sbjct: 79 RHNIMELVEQLGAMEGLE---ELVMTTNGS 105 >gi|218681519|ref|ZP_03529406.1| putative biosynthetic heme protein [Rhizobium etli CIAT 894] Length = 422 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 21/120 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCV 89 CNL C C ++ G+K G +N++ + LIE+ G R Sbjct: 49 CNL-----------GCHHC---YIAGVGSKAKGIDFNLETIQGLIEQALPNGL---RKVK 91 Query: 90 LTGGEPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147 ++GGEP++ + + +++ L G E+ ETNGT+ I+ + P + + Sbjct: 92 VSGGEPMVHKEFMAVMEYLASCGLKELVFETNGTLFDEFTIEQLSRLPNLTVFISLDHFD 151 >gi|254478005|ref|ZP_05091389.1| radical SAM domain protein [Carboxydibrachium pacificum DSM 12653] gi|214036009|gb|EEB76699.1| radical SAM domain protein [Carboxydibrachium pacificum DSM 12653] Length = 292 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 16/101 (15%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +CD + + K V+ + I ++ ++T Sbjct: 13 CNL-----------RCSYCD--YSNKRRDKKSNLLVEDVERFI--LAMSDYMNLGEIMIT 57 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GGEP L ++ I + K I++ TNGT+ + I W+ Sbjct: 58 GGEPFLLSNIEYWILTMKKYSPNISILTNGTLIDSEQIRWL 98 >gi|219851443|ref|YP_002465875.1| molybdenum cofactor biosynthesis protein A [Methanosphaerula palustris E1-9c] gi|219545702|gb|ACL16152.1| molybdenum cofactor biosynthesis protein A [Methanosphaerula palustris E1-9c] Length = 291 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 6/86 (6%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103 C +C + + + +++ ++I + + R TGGEPLL+ D+ Sbjct: 22 DLNCIYC---HAEGEVNPSVQLSAEEIGEII---RVATDFGVRSVKFTGGEPLLREDLTS 75 Query: 104 IQALNKRGFEIAVETNGTIEPPQGID 129 I G E ++ TN T + D Sbjct: 76 IIQAVPSGIETSITTNATHLADKAYD 101 >gi|253573708|ref|ZP_04851051.1| radical SAM domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251847236|gb|EES75241.1| radical SAM domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 294 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 20/94 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC + V+ ++++ + + Sbjct: 15 CNL-----------ACSFC-----PPTHRQAQFIKVEDFRKILDDIKPHTDYIYFHVK-- 56 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124 GEPLL + L+ +++GF++ + TNGT+ P Sbjct: 57 -GEPLLHPKIDQLLDISHEKGFKVNITTNGTLLP 89 >gi|182416944|ref|ZP_02948328.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum 5521] gi|237668693|ref|ZP_04528677.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379242|gb|EDT76743.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum 5521] gi|237657041|gb|EEP54597.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum E4 str. BoNT E BL5262] Length = 305 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 G + ++ D++E+ + L+GGEPL+Q + + L++ +R A+ET Sbjct: 108 GKLMTIKEILDIVEKDSDFYSRSEGGITLSGGEPLMQGEFTINLLKEAKRRRMNTAIETC 167 Query: 120 G 120 G Sbjct: 168 G 168 >gi|58038921|ref|YP_190885.1| molybdenum cofactor biosynthesis protein A [Gluconobacter oxydans 621H] gi|58001335|gb|AAW60229.1| Molybdenum cofactor biosynthesis protein A [Gluconobacter oxydans 621H] Length = 351 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 20/123 (16%) Query: 28 RFSGCNLWSGREQ--DRLSAQCRFC---DTDFVGIQG-TKGGRYNVDQLADLIEEQWITG 81 RFS L R DR + +C +C T + R + D++ + G Sbjct: 19 RFSR-PLHDLRISVMDRCNFRCPYCMPEATYHEHFRFLEPKERLSFDEIERVARVAVSLG 77 Query: 82 EKEGRYCVLTGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTI-------EPPQGIDWI 131 ++ R LTGGEPLL+ +P L+ L G E IA+ TNG + G++ + Sbjct: 78 VRKLR---LTGGEPLLRPKLPELVARLASIEGVEDIALTTNGVLLERHVQDLKEAGLNRV 134 Query: 132 CVS 134 VS Sbjct: 135 TVS 137 >gi|271500817|ref|YP_003333842.1| pyruvate formate-lyase activating enzyme [Dickeya dadantii Ech586] gi|270344372|gb|ACZ77137.1| pyruvate formate-lyase activating enzyme [Dickeya dadantii Ech586] Length = 246 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 59/180 (32%), Gaps = 42/180 (23%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V++L + G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEELMKEVVTYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAG 138 +GGE +LQ + +A +++G ++TNG + + +D Sbjct: 72 GGVTASGGEAILQAEFVRDWFRACHEQGINTCLDTNGFVRRYDPVIDELLD--------A 123 Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198 DL + ++L Q V N+ DF R+ + N I Y P W Sbjct: 124 TDLVMLDLKQLNDEIHQNLVGVSNHRTLDFARY--------LAKRNQRTWIRYVVV-PGW 174 >gi|188587083|ref|YP_001918628.1| glycyl-radical enzyme activating protein family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351770|gb|ACB86040.1| glycyl-radical enzyme activating protein family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 310 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 G + +++ + +E+ + E+ +GGEPL+QVD + L ++G V+T+ Sbjct: 112 GEQMTANKVIEEVEKDKVFFEESKGGVTFSGGEPLMQVDFLYETLCRLKEKGIHTTVDTS 171 Query: 120 GTIEP 124 G + Sbjct: 172 GYVPW 176 >gi|6685644|sp|O27593|MOAA_METTH RecName: Full=Probable molybdenum cofactor biosynthesis protein A Length = 305 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 29/126 (23%) Query: 21 GRVAVFCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77 GR + R S CN+ C +C + G + + L Sbjct: 8 GRPVMSLRLSITGRCNV-----------NCIYC---HRDGMTSSRGELSAADIEKLCRVA 53 Query: 78 WITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFE-IAVETNGTI-------EPPQGI 128 G + R L+GGEPL++ D+ +++ +N GF I++ TNGT+ G+ Sbjct: 54 SDLGVGKIR---LSGGEPLIRDDIVEIVERINNIGFRDISITTNGTLLEGYSAALSEAGL 110 Query: 129 DWICVS 134 D + VS Sbjct: 111 DRVNVS 116 >gi|171184855|ref|YP_001793774.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoproteus neutrophilus V24Sta] gi|170934067|gb|ACB39328.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermoproteus neutrophilus V24Sta] Length = 239 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 20/107 (18%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCNL + A+ + C G +V++L D + + Sbjct: 24 LCGCNLRCPFCHNWRIAERQNC------------GELDVERLLDELARAKPYIDYLH--- 68 Query: 89 VLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI--EPPQGIDWI 131 +TGGEPLLQ L + + G ++ TN T+ + ID I Sbjct: 69 -VTGGEPLLQAEELRHLFKRAGEAGVARSLNTNATLTKALEKVIDEI 114 >gi|147919895|ref|YP_686354.1| putative molybdopterin biosynthesis protein A [uncultured methanogenic archaeon RC-I] gi|121685400|sp|Q0W3L5|MOAA_UNCMA RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|110621750|emb|CAJ37028.1| putative molybdopterin biosynthesis protein A [uncultured methanogenic archaeon RC-I] Length = 307 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 24/110 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + G V+++A + I + Sbjct: 21 CNL-----------KCIYC---HNEGEEDSGSEITVEEVAQI---ARICARYGVDKIKFS 63 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS 134 GGEPLL+ D I +++V TNGT+ G+D + VS Sbjct: 64 GGEPLLRRDFDEILRALPPMRDVSVTTNGTLLAARAESLKESGLDRVNVS 113 >gi|37521317|ref|NP_924694.1| hypothetical protein glr1748 [Gloeobacter violaceus PCC 7421] gi|35212314|dbj|BAC89689.1| glr1748 [Gloeobacter violaceus PCC 7421] Length = 339 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 + GGEPLL + +++ L RG + + TN I + +D S + Sbjct: 72 GAPIVTIPGGEPLLHPQIDQIVEGLVDRGKFVYLCTN-AILLEKNLDKFTPSDYFSFSVH 130 Query: 143 IKGGQE 148 + G +E Sbjct: 131 LDGLRE 136 >gi|302340636|ref|YP_003805842.1| glycyl-radical enzyme activating protein family [Spirochaeta smaragdinae DSM 11293] gi|301637821|gb|ADK83248.1| glycyl-radical enzyme activating protein family [Spirochaeta smaragdinae DSM 11293] Length = 307 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 39/140 (27%), Gaps = 45/140 (32%) Query: 24 AVFCRFSGCNLWSGREQDRLS-------------------------------------AQ 46 VF F GC L G + A+ Sbjct: 31 TVF--FQGCPLRCGWCSNPEGQLKKTRIFYYESLCIHCGKCISVCPNKAIGPAFETIQAR 88 Query: 47 CRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101 C C + G + G V + ++ + G L+GGEP++ + Sbjct: 89 CVGCGECASVCYTGARQVSGTPMTVQDVVEICLADSMFYFHSGGGVTLSGGEPVMFSEFS 148 Query: 102 -PLIQALNKRGFEIAVETNG 120 L++ L A ET G Sbjct: 149 CELLKELKAHNISTAFETCG 168 >gi|315147097|gb|EFT91113.1| hypothetical protein HMPREF9497_01994 [Enterococcus faecalis TX4244] Length = 304 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 16/82 (19%) Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN----KRGFEIAVETN 119 R++ DQ+ + +E + + + +++GGEPLL + LI L K G I + TN Sbjct: 3 RFSEDQILSIFKE---ISKLKCQNVIISGGEPLLYKN--LINLLRIGKQKYGLCIGLVTN 57 Query: 120 GTI-------EPPQGIDWICVS 134 GT+ +D++ +S Sbjct: 58 GTMVDDYLAQRLSNVVDYVQIS 79 >gi|238757610|ref|ZP_04618794.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia aldovae ATCC 35236] gi|238704115|gb|EEP96648.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia aldovae ATCC 35236] Length = 246 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 44/184 (23%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G V++L Sbjct: 25 VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134 G +GGE +LQ + +A ++ G ++TNG + + +D Sbjct: 68 NASGGGVTASGGEAILQAEFVRDWFRACHEEGIHTCLDTNGFVRRYDPVIDELLD----- 122 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 DL + +++ Q V N+ +F R+ + N I Y Sbjct: 123 ---ATDLVMLDLKQMDDSVHQNLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV 171 Query: 195 NPKW 198 P W Sbjct: 172 -PGW 174 >gi|162451211|ref|YP_001613578.1| hypothetical protein sce2939 [Sorangium cellulosum 'So ce 56'] gi|161161793|emb|CAN93098.1| moaA3 [Sorangium cellulosum 'So ce 56'] Length = 373 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 48/138 (34%), Gaps = 25/138 (18%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR C +C G G+ + E G + R LTGGEPLL + Sbjct: 67 DRCDFACTYC--RPSRHDGYADGKLMTAAWRTMFEALRDAGIRRVR---LTGGEPLLHPE 121 Query: 101 V-PLIQALNKRGFE-IAVETNGT--------------IEPPQGIDWICVSPKAGCDLKIK 144 + ++ L GFE +A+ TN + ID + P + + Sbjct: 122 IVSIVGCLAALGFEDLALTTNASQLARLAGALRAAGLHRLNVSID--TLDPGRFGE--MT 177 Query: 145 GGQELKLVFPQVNVSPEN 162 G EL V ++ + Sbjct: 178 RGGELARVLDGIDAAIAA 195 >gi|91782007|ref|YP_557213.1| GTP cyclohydrolase subunit MoaA [Burkholderia xenovorans LB400] gi|91685961|gb|ABE29161.1| GTP cyclohydrolase subunit MoaA [Burkholderia xenovorans LB400] Length = 356 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 25/153 (16%) Query: 41 DRLSAQCRFC---DT---DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 D+ + +C +C +T D+ + + R + +Q+ L + + G ++ R +TGGE Sbjct: 32 DQCNFRCTYCMPRETFGADYPFLASS--ERMSFEQILKLAKAFTLLGVEKIR---ITGGE 86 Query: 95 PLLQVDVP-LIQALNKR----GFEI--AVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ + LI+ L K G + A+ TNG++ G+ + VS A D Sbjct: 87 PLLRRGLESLIEQLAKLTTASGKPVELALTTNGSLLAAKARSLRDAGLGRVTVSLDAVED 146 Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173 + ++ + ++ E E + Sbjct: 147 AVFRRMSDVDMSVARILDGIEAARAVGLEPIKV 179 >gi|319790529|ref|YP_004152162.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1] gi|317115031|gb|ADU97521.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1] Length = 219 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 19/96 (19%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R CNL ++ A + R+N +L + + + G Sbjct: 30 LRL--CNLNCYHCHNKHLA-------------PKEYERFNYGELEEKLSLCKLLG---VE 71 Query: 87 YCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT 121 +++GGEP L+ + ++ + ++GF + ++TNGT Sbjct: 72 LVIVSGGEPTLEPRLEEGLKFIKEKGFPVRLDTNGT 107 >gi|71280570|ref|YP_267606.1| pyrroloquinoline quinone biosynthesis protein PqqE [Colwellia psychrerythraea 34H] gi|71146310|gb|AAZ26783.1| coenzyme PQQ synthesis protein E [Colwellia psychrerythraea 34H] Length = 378 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 67/191 (35%), Gaps = 43/191 (22%) Query: 33 NLWSGREQDRL-SAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 LW E C +C DT N +Q D++ + G + Sbjct: 12 PLWLLAELTYDCPLHCPYCSNPTELGDTK---------DELNTEQWLDVLTQARAMGAVQ 62 Query: 85 GRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143 + +GGEPLL+ D+ +++ + GF + T+G I ++ K LK+ Sbjct: 63 LGF---SGGEPLLRKDLEQMVKHSRELGFYTNLITSG----------IGLTEKRIAKLKV 109 Query: 144 KGGQELKLVFPQVNVSPENYI---GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW-- 198 G +++ F + + I G FE+ M + + +++ Sbjct: 110 AGLDHIQISFQGADPEMNDIIAGRGNAFEQKF--KMAQSVKAQGYPMVLNFVISKQNISQ 167 Query: 199 -----RLSVQT 204 RLS Q Sbjct: 168 VEDIMRLSCQL 178 >gi|117928906|ref|YP_873457.1| radical SAM domain-containing protein [Acidothermus cellulolyticus 11B] gi|117649369|gb|ABK53471.1| Radical SAM domain protein [Acidothermus cellulolyticus 11B] Length = 334 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 8/86 (9%) Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI-QALNKRGFEIAVETNGTI 122 R V+Q IEE + GGEPL+ ++ +I + L KR + + TN + Sbjct: 58 RMPVEQAIAAIEECG------APMVSIAGGEPLMHPEIDVIVRELVKRKKFVYLCTN-AL 110 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQE 148 + +D SP + I G +E Sbjct: 111 LMRKKLDLFKPSPYFSWAVHIDGLEE 136 >gi|257091938|ref|YP_003165579.1| Radical SAM domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044462|gb|ACV33650.1| Radical SAM domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 398 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 25/112 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + DTDF G D++ ++++ +L+ Sbjct: 36 CNLTCKHCYSISA------DTDF-------PGELATDEIFVVMDDLK---GFRVPVLILS 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGI--------DWICVS 134 GGEPLL+ D+ + + GF + + +NGT+ I D++ VS Sbjct: 80 GGEPLLRPDIFDIARRAKSMGFYVGLSSNGTLIDAANIARIADCDFDYVGVS 131 >gi|238928202|ref|ZP_04659962.1| molybdenum cofactor biosynthesis protein A [Selenomonas flueggei ATCC 43531] gi|238884162|gb|EEQ47800.1| molybdenum cofactor biosynthesis protein A [Selenomonas flueggei ATCC 43531] Length = 331 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 26/114 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90 CNL +CR+C + G K R+ +V +++ + R L Sbjct: 20 CNL-----------RCRYC----MPAHGVKKLRHADVLTYEEILRDVRALAALGVRKVRL 64 Query: 91 TGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134 TGGEPL++ D+ L++ L + G E +A+ TNG + G+D + +S Sbjct: 65 TGGEPLVRRDITRLVRGLKEIPGIETVALTTNGVLLGTMMDELLDAGLDAVNLS 118 >gi|146302363|ref|YP_001196954.1| molybdenum cofactor biosynthesis protein A [Flavobacterium johnsoniae UW101] gi|146156781|gb|ABQ07635.1| GTP cyclohydrolase subunit MoaA [Flavobacterium johnsoniae UW101] Length = 335 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 16/104 (15%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL +C +C + K D++ + + G + R Sbjct: 24 LEKCNL-----------RCTYCMPADGIVLSPKASLMTADEIFGIAQTFAQNGVDKIR-- 70 Query: 89 VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI 131 LTGGEPLL+ D P ++ L ++V TNG I + ID + Sbjct: 71 -LTGGEPLLRKDFPEIVSKLAVLDVSLSVTTNG-ILIDRHIDVL 112 >gi|78187401|ref|YP_375444.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273] gi|78167303|gb|ABB24401.1| GTP cyclohydrolase subunit MoaA [Chlorobium luteolum DSM 273] Length = 339 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 27/117 (23%) Query: 28 RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 R CNL +C +C GT + ++ +I G K+ R Sbjct: 28 RL--CNL-----------RCSYC-MREEHESGTAAAMMSFSEVTAIIRALAAMGIKKVR- 72 Query: 88 CVLTGGEPLLQVDVP--LIQALNKRGFE-IAVETNG-------TIEPPQGIDWICVS 134 LTGGEPLL+ D+ ++ A G E + + TNG GID I +S Sbjct: 73 --LTGGEPLLRNDISDIVLAAKQTPGIEKVTLTTNGLLLDRHLDRLLEAGIDAINIS 127 >gi|33593670|ref|NP_881314.1| molybdenum cofactor biosynthesis protein A [Bordetella pertussis Tohama I] gi|33563743|emb|CAE42983.1| molybdenum cofactor biosynthesis protein [Bordetella pertussis Tohama I] Length = 365 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 25/114 (21%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D+ + + + + +++ L + G ++ R LTGGE Sbjct: 46 DRCNFRCTYCMPREVFDSSYAFMPHS--ALLSFEEITRLAAQFARLGVEKIR---LTGGE 100 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEPP-------QGIDWICVS 134 PLL+ ++ L+ L + R ++ + TNG++ G+ + VS Sbjct: 101 PLLRKNIETLVGMLAELRTPAGRPLDLTLTTNGSLLARKAAALKQAGLSRVTVS 154 >gi|256828055|ref|YP_003156783.1| molybdenum cofactor biosynthesis protein A [Desulfomicrobium baculatum DSM 4028] gi|256577231|gb|ACU88367.1| molybdenum cofactor biosynthesis protein A [Desulfomicrobium baculatum DSM 4028] Length = 330 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 6/85 (7%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + T + ++ E + E LTGGEP + D Sbjct: 19 DRCNLRCLYC---RPQSEWTFMPHEQILSFEEMAELVDVAKEAGVEKVRLTGGEPFARKD 75 Query: 101 -VPLIQALNKR--GFEIAVETNGTI 122 +P L+ + ++ + TNGT+ Sbjct: 76 FIPFTGRLHAKYPDLDLRITTNGTL 100 >gi|74316089|ref|YP_313829.1| Elongator protein 3/MiaB/NifB [Thiobacillus denitrificans ATCC 25259] gi|74055584|gb|AAZ96024.1| Elongator protein 3/MiaB/NifB [Thiobacillus denitrificans ATCC 25259] Length = 399 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 14/111 (12%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + R + C+ C + + G D++ ++++ +L+G Sbjct: 26 PVVIWNLVRRCNLTCKHCYS--ISADKDFPGELGTDEVFAVMDDLKR---FRVPVLILSG 80 Query: 93 GEPLLQVDVPLI-QALNKRGFEIAVETNGTI--------EPPQGIDWICVS 134 GEPLL+ D+ I Q GF + + +NGT+ G D++ VS Sbjct: 81 GEPLLRPDIYAIAQRAKDMGFYVGLSSNGTLIDEHNIERIAAIGFDYVGVS 131 >gi|295698854|ref|YP_003606747.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. CCGE1002] gi|295438067|gb|ADG17236.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. CCGE1002] Length = 412 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 9/91 (9%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVL 90 LW E R C FC + + T R Q D++ E G + + Sbjct: 26 PLWLLAELTYRCPLHCAFC---YNPLDYTDHNRELTTGQWLDVLREARALGAVQLGF--- 79 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL++ DV L++ ++ GF + T+G Sbjct: 80 SGGEPLVRDDVEVLVEEAHRLGFYTNLITSG 110 >gi|226944168|ref|YP_002799241.1| MoaA, NifB, PqqE, radical SAM superfamily protein [Azotobacter vinelandii DJ] gi|226719095|gb|ACO78266.1| MoaA, NifB, PqqE, radical SAM superfamily protein [Azotobacter vinelandii DJ] Length = 377 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 27/138 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C + R +V+ ++E + + Sbjct: 38 CNLAC--------AGCG----KIDHPKDVLRKRMSVEDALRAVDE------CDAPVVSIP 79 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSP----KAGCDLKIKGG 146 GGEPL+ ++P +++ + R + + TN I P+ ID SP D K Sbjct: 80 GGEPLIHKEMPQIVRGIVARKKFVYLCTN-AILLPKHIDEYEPSPYFTWSIHLDGLQKRH 138 Query: 147 QE---LKLVFPQVNVSPE 161 E +K VF + + + Sbjct: 139 DESVCMKGVFDKAVAAIK 156 >gi|186471270|ref|YP_001862588.1| coenzyme PQQ biosynthesis protein E [Burkholderia phymatum STM815] gi|184197579|gb|ACC75542.1| coenzyme PQQ biosynthesis protein E [Burkholderia phymatum STM815] Length = 405 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 9/91 (9%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90 LW E R C FC + + T + Q D++++ G + + Sbjct: 23 PLWLLAELTYRCPLHCAFC---YNPVNYTDHRDELSTAQWIDVLQQARKLGAAQLGF--- 76 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL++ D+ L+ ++ GF + T+G Sbjct: 77 SGGEPLMRDDLEALVAEAHRLGFYTNLITSG 107 >gi|21230455|ref|NP_636372.1| molybdenum cofactor biosynthesis protein A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769551|ref|YP_244313.1| molybdenum cofactor biosynthesis protein A [Xanthomonas campestris pv. campestris str. 8004] gi|24211977|sp|Q8PBX1|MOAA_XANCP RecName: Full=Molybdenum cofactor biosynthesis protein A gi|81304494|sp|Q4URN0|MOAA_XANC8 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|21112018|gb|AAM40296.1| molybdenum cofactor biosynthesis protein A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574883|gb|AAY50293.1| molybdenum cofactor biosynthesis protein A [Xanthomonas campestris pv. campestris str. 8004] Length = 339 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 16/102 (15%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 +C +C D R + DQL L+ G + R LTGGEPLL+ ++P Sbjct: 32 RCGYCMPADRVPDDYGLDADQRLSFDQLETLVRAFVAVGVTKLR---LTGGEPLLRKNLP 88 Query: 103 -LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVS 134 LIQ L G E +A+ TNG + Q + I VS Sbjct: 89 VLIQRLAAIEGIEDLALTTNGALLARQAVALRQAGLRRITVS 130 >gi|323474370|gb|ADX84976.1| Fe-S oxidoreductase [Sulfolobus islandicus REY15A] Length = 378 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 7/91 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + + + + +C C ++ ++ LI+E E +++G Sbjct: 36 PVVTWNLTLKCNLKCLHC---YINSSPEGEDGSTTEEALRLIDEM---AEMRIPLVIMSG 89 Query: 93 GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GEPL++ D L +G ++A+ TNGT+ Sbjct: 90 GEPLMRRDFFELASYARIKGIKLALSTNGTL 120 >gi|260776178|ref|ZP_05885073.1| pyruvate formate-lyase activating enzyme [Vibrio coralliilyticus ATCC BAA-450] gi|260607401|gb|EEX33666.1| pyruvate formate-lyase activating enzyme [Vibrio coralliilyticus ATCC BAA-450] Length = 215 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 14/132 (10%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101 +C +C DT G V+++ + + G +GGE +LQ + Sbjct: 2 RCMYCHNRDT----WDTHGGKEVTVEEIINEAKSYRHFMNASGGGVTCSGGEAMLQPEFV 57 Query: 102 -PLIQALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159 ++ G ++TNG I + ID + DL + + +K + Sbjct: 58 RDFFRSAKAEGIHTCLDTNGYIRKHTEVIDEVL----EATDLVMLDLKHMKDEVHHDFIG 113 Query: 160 PENYIGFDFERF 171 N DF R+ Sbjct: 114 VSNRRTLDFARY 125 >gi|239623137|ref|ZP_04666168.1| radical SAM [Clostridiales bacterium 1_7_47_FAA] gi|239522504|gb|EEQ62370.1| radical SAM [Clostridiales bacterium 1_7_47FAA] Length = 276 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 56/176 (31%), Gaps = 44/176 (25%) Query: 24 AVFCRFSGCN---LWSGREQDRLSAQ---------------------------CRFCDTD 53 AVF GCN L+ + + C CDT Sbjct: 22 AVF--LQGCNQNCLYCHNPETINLCRNCGACVKTCPAGALSMADGLVSYDYKACCNCDTC 79 Query: 54 F---VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALN 108 K +QL D ++ + +GGE L +D + Sbjct: 80 LKTCAYDASPKIRNMTPEQLYDEVKAYFPFISG----ITTSGGECSLYLDFLKEFYTLVK 135 Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE--LKLVFPQVNVSPEN 162 G ++TNG + D + V+ K DLK G +E +KL ++ + EN Sbjct: 136 AAGRTTYMDTNGQVPLWDRTDLLEVTDKTMIDLK-AGSEEDHMKLTGRELGIPVEN 190 >gi|222150403|ref|YP_002559556.1| molybdenum cofactor biosynthesis protein MoaA homolog [Macrococcus caseolyticus JCSC5402] gi|222119525|dbj|BAH16860.1| molybdenum cofactor biosynthesis protein MoaA homolog [Macrococcus caseolyticus JCSC5402] Length = 336 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D D+V + K + ++L + + G K+ R +TGG Sbjct: 21 DRCNFRCTYCMPKEIFGD-DYVFL--PKDELLSFEELTRIAKVYAQLGVKKVR---ITGG 74 Query: 94 EPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 EPLL+ D+P LI+ ++ G E I + TNG Sbjct: 75 EPLLRRDLPDLIREIHAIEGIEDIGLTTNG 104 >gi|312880208|ref|ZP_07740008.1| GTP cyclohydrolase subunit MoaA [Aminomonas paucivorans DSM 12260] gi|310783499|gb|EFQ23897.1| GTP cyclohydrolase subunit MoaA [Aminomonas paucivorans DSM 12260] Length = 326 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 8/106 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLT 91 N DR + +C +C GI + R +++ L E G + R+ T Sbjct: 13 NYVRISITDRCNYRCVYC-MPPEGIPALEHHRILRYEEILFLCEALVAMGVRRVRF---T 68 Query: 92 GGEPLLQVD-VPLIQALNKR--GFEIAVETNGTIEPPQGIDWICVS 134 GGEPL++ +P ++ L +R +A+ TNG++ P D + Sbjct: 69 GGEPLVRKGVLPFLKELRERFPSLRVALTTNGSLLKPYAQDLAALD 114 >gi|168177874|ref|ZP_02612538.1| putative radical SAM domain protein [Clostridium botulinum NCTC 2916] gi|182671556|gb|EDT83530.1| putative radical SAM domain protein [Clostridium botulinum NCTC 2916] Length = 413 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 23/121 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CD + ++ + +++ E + +T Sbjct: 102 CNLHCKHCMVNADK----CDIK---------ENFTTKEIINALDKII---EAKPEAITIT 145 Query: 92 GGEPLLQVD-VPLIQALNKR-GFEIAVETNGTIEPPQGIDWI--CVSPKAGCDLKIKGGQ 147 GGEPL++ D + +I+ L +I + TN T+ I+ I CVS D+ I G Sbjct: 146 GGEPLVRPDFIQIIKYLKNNYNGKIGLMTNATLITENNINDIISCVS---SIDISIDGVD 202 Query: 148 E 148 E Sbjct: 203 E 203 >gi|78046661|ref|YP_362836.1| molybdenum cofactor biosynthesis protein A [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035091|emb|CAJ22736.1| molybdenum cofactor biosynthesis protein A [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 343 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 9/83 (10%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 +C +C D R + DQL L+ G + R LTGGEPLL+ D+P Sbjct: 36 RCGYCMPADRVPDDYGFDSQQRLSFDQLETLVRAFVSVGVTKVR---LTGGEPLLRRDLP 92 Query: 103 -LIQALNK-RGFE-IAVETNGTI 122 LI L G E +A+ TNGT+ Sbjct: 93 SLIARLTAIEGIEDLALTTNGTL 115 >gi|312143440|ref|YP_003994886.1| molybdenum cofactor biosynthesis protein A [Halanaerobium sp. 'sapolanicus'] gi|311904091|gb|ADQ14532.1| molybdenum cofactor biosynthesis protein A [Halanaerobium sp. 'sapolanicus'] Length = 321 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 12/103 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + + + + L +I+ G + R +TGGEPL+++ Sbjct: 21 DRCNLRCHYCMPAEGIKEKSHSEILSYEDLIKIIKTAQKIGVDKVR---ITGGEPLVRLG 77 Query: 101 VP-LIQALNKRGFE-IAVETNGTIEPP-------QGIDWICVS 134 V LI L+K G + +++ TNG + G+D I +S Sbjct: 78 VEDLIAGLSKLGLKDLSMTTNGVLLAEKAAELKKAGLDRINIS 120 >gi|300704632|ref|YP_003746235.1| molybdenum cofactor biosynthesis protein a [Ralstonia solanacearum CFBP2957] gi|299072296|emb|CBJ43629.1| Molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum CFBP2957] Length = 373 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 25/136 (18%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ ++ + + +++ ++ G ++ R LTGGE Sbjct: 52 DRCNFRCVYCMPKDVFDKDYRFLRHS--ELLSFEEIERMVRLFIEHGVEKIR---LTGGE 106 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ D+ L++ L + + ++ + TNG + G+ + VS A D Sbjct: 107 PLLRKDIERLVEMLARLTTRDGKPLDLTLTTNGALLARKAQSLKDAGLKRVTVSLDAIDD 166 Query: 141 LKIKGGQELKLVFPQV 156 + ++ +V Sbjct: 167 ATFRRMNDVDFAVGEV 182 >gi|295100160|emb|CBK89249.1| glycyl-radical enzyme activating protein family [Eubacterium cylindroides T2-87] Length = 300 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 6/113 (5%) Query: 46 QCRFCDTDF----VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--V 99 C C T G G ++D + + + E+ ++GGEP +Q Sbjct: 82 ACIHCKTCENNCPAGAINFIGDAVSIDDIVTEVLKDKPFYEESNGGVTISGGEPFVQYNA 141 Query: 100 DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152 L+ + +AVET G D I DLK + LV Sbjct: 142 LKALLNKFFEEDISVAVETTGDTHWKNIEDLIPYIDYFLFDLKFPTANRISLV 194 >gi|268324243|emb|CBH37831.1| conserved hypothetical protein, radical SAM superfamily [uncultured archaeon] Length = 282 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 20/98 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY- 87 SGCN +C+ C F + G V++L + I Sbjct: 29 LSGCNF-----------KCKGC---FSIARDPVGESMTVNELINFIRRSNWIYSNITPLE 74 Query: 88 -CVLTGGEPLLQVD--VPLIQALNKR--GFEIAVETNG 120 ++TGGEP L + + L++ L + I + TNG Sbjct: 75 GAIITGGEPTLDKNFLLDLVRKLKTKVDVKHITLSTNG 112 >gi|207743614|ref|YP_002260006.1| molybdenum cofactor biosynthesis protein a [Ralstonia solanacearum IPO1609] gi|206595013|emb|CAQ61940.1| molybdenum cofactor biosynthesis protein a [Ralstonia solanacearum IPO1609] Length = 391 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 25/136 (18%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ ++ + + +++ ++ G ++ R LTGGE Sbjct: 70 DRCNFRCVYCMPKDVFDKDYRFLRHS--ELLSFEEIERMVRLFIEHGVEKIR---LTGGE 124 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ D+ L++ L + + ++ + TNG + G+ + VS A D Sbjct: 125 PLLRKDIERLVEMLARLTTRDGKPLDLTLTTNGALLARKAQSLKDAGLKRVTVSLDAIDD 184 Query: 141 LKIKGGQELKLVFPQV 156 + ++ +V Sbjct: 185 ATFRRMNDVDFAVGEV 200 >gi|207725239|ref|YP_002255635.1| molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum MolK2] gi|206590473|emb|CAQ37435.1| molybdenum cofactor biosynthesis protein a [Ralstonia solanacearum MolK2] Length = 391 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 25/136 (18%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ ++ + + +++ ++ G ++ R LTGGE Sbjct: 70 DRCNFRCVYCMPKDVFDKDYRFLRHS--ELLSFEEIERMVRLFIEHGVEKIR---LTGGE 124 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ D+ L++ L + + ++ + TNG + G+ + VS A D Sbjct: 125 PLLRKDIERLVEMLARLTTRDGKPLDLTLTTNGALLARKAQSLKDAGLKRVTVSLDAIDD 184 Query: 141 LKIKGGQELKLVFPQV 156 + ++ +V Sbjct: 185 ATFRRMNDVDFAVGEV 200 >gi|83748466|ref|ZP_00945488.1| Molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum UW551] gi|83724877|gb|EAP72033.1| Molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum UW551] Length = 373 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 25/136 (18%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ ++ + + +++ ++ G ++ R LTGGE Sbjct: 52 DRCNFRCVYCMPKDVFDKDYRFLRHS--ELLSFEEIERMVRLFIEHGVEKIR---LTGGE 106 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ D+ L++ L + + ++ + TNG + G+ + VS A D Sbjct: 107 PLLRKDIERLVEMLARLTTRDGKPLDLTLTTNGALLARKAQSLKDAGLKRVTVSLDAIDD 166 Query: 141 LKIKGGQELKLVFPQV 156 + ++ +V Sbjct: 167 ATFRRMNDVDFAVGEV 182 >gi|114775695|ref|ZP_01451263.1| pyruvate formate lyase activating enzyme [Mariprofundus ferrooxydans PV-1] gi|114553806|gb|EAU56187.1| pyruvate formate lyase activating enzyme [Mariprofundus ferrooxydans PV-1] Length = 264 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 59/178 (33%), Gaps = 45/178 (25%) Query: 26 FCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 F SGC +C +C DT I+ G VD + + I E Sbjct: 47 FV--SGC-----------QFRCLYCHNPDT----IKMHNGTLRTVDHVLEEIAEFAAFLR 89 Query: 83 KEGRYCVLTGGEPLLQVDV---PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139 G ++GGEPL+Q D A + A++T G + +W Sbjct: 90 FAGGL-TISGGEPLMQADFVREVFYLAKHDYHLHTALDTQGFLAAHLEDEWF-------- 140 Query: 140 DLKIKGGQELKLVFPQV-NVSPENYIGFDFERFSLQPM---DGPFLEENTNLAISYCF 193 ++ LV + ++ P+ Y+ + LQP + + I Y Sbjct: 141 -------DDIDLVLLDIKHIDPDKYLALTSQP--LQPTLDFARRLSDMGKKMWIRYVL 189 >gi|228966456|ref|ZP_04127509.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar sotto str. T04001] gi|228793178|gb|EEM40728.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar sotto str. T04001] Length = 340 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D F+ + D++ + G ++ R +TG Sbjct: 24 DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 76 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ L+K G E I + TNG++ D + VS Sbjct: 77 GEPLLRRGLPKLIERLHKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 128 >gi|257791940|ref|YP_003182546.1| molybdenum cofactor biosynthesis protein A [Eggerthella lenta DSM 2243] gi|257475837|gb|ACV56157.1| molybdenum cofactor biosynthesis protein A [Eggerthella lenta DSM 2243] Length = 333 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 6/92 (6%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C G+Q ++ ++ ++ E + R LTGGEPL+++ Sbjct: 18 DRCNFRCIYC-MPEEGVQSLAHE--DILRIEEIEEAVRVAAGMGIRSIRLTGGEPLVRLG 74 Query: 101 -VPLIQAL-NKRGFE-IAVETNGTIEPPQGID 129 V L++A+ + G E +++ TNG + P +D Sbjct: 75 VVDLVRAIAHTPGIENVSMTTNGVLLPKMAVD 106 >gi|187778214|ref|ZP_02994687.1| hypothetical protein CLOSPO_01806 [Clostridium sporogenes ATCC 15579] gi|187775142|gb|EDU38944.1| hypothetical protein CLOSPO_01806 [Clostridium sporogenes ATCC 15579] Length = 312 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C FC +T K +++ ++++ + + Sbjct: 35 CNL-----------ACDFCPETKR------KAQFMSIEIFDKILDQIKPYTDYIYFHVK- 76 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL D+ + K+GF++ + TNGT+ Sbjct: 77 --GEPLLHPDIDKFLDLSYKKGFKVNITTNGTL 107 >gi|163786902|ref|ZP_02181350.1| Fe-S protein, radical SAM family [Flavobacteriales bacterium ALC-1] gi|159878762|gb|EDP72818.1| Fe-S protein, radical SAM family [Flavobacteriales bacterium ALC-1] Length = 464 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 58/174 (33%), Gaps = 35/174 (20%) Query: 31 GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G D C C T + G T G ++++ +++ + Sbjct: 80 GCPYDCGLCPDHEQHSCLTVLEVTDRCNLTCPTCYAGSSPTYGRHRTLEEVKTMLD-TIV 138 Query: 80 TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKA 137 EKE ++GGEP + ++ + + TNG K Sbjct: 139 KNEKEPDVVQISGGEPTIHPQFWDIMDYAKSLPIRHLMLNTNGI--------------KI 184 Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFD-FERFSLQPMDGPFLEENTNLAIS 190 D + + LK P E Y+ FD FE LQ + G L + A+ Sbjct: 185 AKDF--EFAKRLKTYAP----DFEIYLQFDSFENTVLQELRGADLNDIREQALE 232 >gi|302037561|ref|YP_003797883.1| hypothetical protein NIDE2242 [Candidatus Nitrospira defluvii] gi|300605625|emb|CBK41958.1| conserved protein of unknown function [Candidatus Nitrospira defluvii] Length = 355 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 47/133 (35%), Gaps = 36/133 (27%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69 + TLQ H GR CNL QC C + + +D Sbjct: 8 YPTLQ---VHPGRR--------CNL-----------QCLHC---YSDSGPAVTEQLAIDL 42 Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI------ 122 L ++ + G R ++GGEPLL + L++A + G V TNG + Sbjct: 43 LEQVVADAAAIGY---RVMSVSGGEPLLYPGLAQLLRAAHASGLVTTVTTNGMLLDQRQL 99 Query: 123 -EPPQGIDWICVS 134 D + +S Sbjct: 100 NVLEADCDLVAIS 112 >gi|238749780|ref|ZP_04611285.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia rohdei ATCC 43380] gi|238712435|gb|EEQ04648.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia rohdei ATCC 43380] Length = 246 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 59/184 (32%), Gaps = 44/184 (23%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G V++L Sbjct: 25 VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134 G +GGE +LQ + +A +K G ++TNG + + +D Sbjct: 68 NASGGGVTASGGEAILQAEFVRDWFRACHKEGIHTCLDTNGFVRRYDPVIDELLD----- 122 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 DL + +++ Q V N+ +F R+ + N I Y Sbjct: 123 ---ATDLVMLDLKQMDDSVHQNLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV 171 Query: 195 NPKW 198 P W Sbjct: 172 -PGW 174 >gi|225572370|ref|ZP_03781234.1| hypothetical protein RUMHYD_00664 [Blautia hydrogenotrophica DSM 10507] gi|225040137|gb|EEG50383.1| hypothetical protein RUMHYD_00664 [Blautia hydrogenotrophica DSM 10507] Length = 364 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 11/86 (12%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRY----NVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 R + CR C +V ++ + RY + + + E+ G + +TGGEPL+ Sbjct: 43 RCNFDCRMC---YVHLKPEEMPRYGRELSAKEWLKVAEDARAAGTV---WLCVTGGEPLM 96 Query: 98 QVDVPLIQA-LNKRGFEIAVETNGTI 122 + I L GF I ++TN ++ Sbjct: 97 HPEFETIWRGLTGMGFFITLQTNASL 122 >gi|238784521|ref|ZP_04628529.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia bercovieri ATCC 43970] gi|238714584|gb|EEQ06588.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia bercovieri ATCC 43970] Length = 246 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 44/184 (23%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G V++L Sbjct: 25 VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134 G +GGE +LQ + +A ++ G ++TNG + + +D Sbjct: 68 NASGGGVTASGGEAILQAEFVRDWFRACHEEGIHTCLDTNGFVRRYDPVIDELLD----- 122 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 DL + +++ Q V N+ +F R+ + N I Y Sbjct: 123 ---ATDLVMLDLKQMDDSVHQNLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV 171 Query: 195 NPKW 198 P W Sbjct: 172 -PGW 174 >gi|75762416|ref|ZP_00742285.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228902038|ref|ZP_04066203.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis IBL 4222] gi|74490091|gb|EAO53438.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228857624|gb|EEN02119.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis IBL 4222] Length = 340 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D F+ + D++ + G ++ R +TG Sbjct: 24 DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 76 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ L+K G E I + TNG++ D + VS Sbjct: 77 GEPLLRRGLPKLIERLHKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 128 >gi|326775270|ref|ZP_08234535.1| hopanoid biosynthesis associated radical SAM protein HpnH [Streptomyces cf. griseus XylebKG-1] gi|326655603|gb|EGE40449.1| hopanoid biosynthesis associated radical SAM protein HpnH [Streptomyces cf. griseus XylebKG-1] Length = 339 Score = 44.6 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 38 CNLAC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + +++ L R + + TN + + +D SP + I G +E Sbjct: 80 GGEPLMHPQIDEIVRQLVARKKYVFLCTN-AMLMRKKLDKFTPSPYFAFAVHIDGLRE 136 >gi|218289231|ref|ZP_03493466.1| molybdenum cofactor biosynthesis protein A [Alicyclobacillus acidocaldarius LAA1] gi|218240579|gb|EED07759.1| molybdenum cofactor biosynthesis protein A [Alicyclobacillus acidocaldarius LAA1] Length = 341 Score = 44.6 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 20/168 (11%) Query: 41 DRLSAQCRFC-DTDFVGIQGT---KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 DR + +C +C +D G + D++A L+ G ++ R LTGGEPL Sbjct: 25 DRCNFRCPYCMPSDVFGPDYPFLRPDALMSPDEIAKLVRALVPLGLEKVR---LTGGEPL 81 Query: 97 LQVD-VPLIQALNKRG--FEIAVETNGTIEPPQ--------GIDWICVSPKAGCDLKIKG 145 L+ + + +++ + EIA+ TNG++ + G+ I VS A Sbjct: 82 LRREVIEIVEKVAAVPGLHEIAMTTNGSLLTREKAMSLKRAGLTRITVSLDALRPDVAAR 141 Query: 146 GQELKLVFPQV--NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191 ++ +V + + G + ++ G +E +A + Sbjct: 142 MNGVRFPVHRVLSAIEAADEAGLAPVKVNVVVRRGWNEDEVVAIAERF 189 >gi|182434753|ref|YP_001822472.1| hypothetical protein SGR_960 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463269|dbj|BAG17789.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 342 Score = 44.6 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 41 CNLAC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 82 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + +++ L R + + TN + + +D SP + I G +E Sbjct: 83 GGEPLMHPQIDEIVRQLVARKKYVFLCTN-AMLMRKKLDKFTPSPYFAFAVHIDGLRE 139 >gi|169350092|ref|ZP_02867030.1| hypothetical protein CLOSPI_00834 [Clostridium spiroforme DSM 1552] gi|169293305|gb|EDS75438.1| hypothetical protein CLOSPI_00834 [Clostridium spiroforme DSM 1552] Length = 313 Score = 44.6 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118 Y+++ L + I+E + +G +GGEPL+Q V +++ + G A+ET Sbjct: 112 DSEVYDIETLLEKIKEDEVFFRDDGG-VTFSGGEPLMQGQFLVEILKRCKEEGLHTAIET 170 >gi|194334092|ref|YP_002015952.1| radical SAM domain-containing protein [Prosthecochloris aestuarii DSM 271] gi|194311910|gb|ACF46305.1| Radical SAM domain protein [Prosthecochloris aestuarii DSM 271] Length = 346 Score = 44.6 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 20/95 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C + G +Q L+ + + L+ Sbjct: 17 CNL-----------SCVYCYENACRHDGAAMSLQTAEQAVGLVA-----ASGKPFHIQLS 60 Query: 92 GGEPLLQVDV--PLIQALNKRGFE--IAVETNGTI 122 GGEPLL D +++ + K+G ++++TNG + Sbjct: 61 GGEPLLAPDTIFAVMELIRKKGIPAFVSLQTNGVL 95 >gi|170699342|ref|ZP_02890390.1| coenzyme PQQ biosynthesis protein E [Burkholderia ambifaria IOP40-10] gi|170135772|gb|EDT04052.1| coenzyme PQQ biosynthesis protein E [Burkholderia ambifaria IOP40-10] Length = 374 Score = 44.6 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 9/91 (9%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 LW E R C FC + + T G + D +I + G + Sbjct: 13 PLWLLAELTYRCPLHCAFC---YNPVDFATHGAELDTDAWRTVISDARALGAAQ---IGF 66 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL + D+ L+Q GF + T+G Sbjct: 67 SGGEPLQRDDLEVLVQHARSLGFYTNLITSG 97 >gi|322369540|ref|ZP_08044105.1| molybdenum cofactor biosynthesis protein A [Haladaptatus paucihalophilus DX253] gi|320551272|gb|EFW92921.1| molybdenum cofactor biosynthesis protein A [Haladaptatus paucihalophilus DX253] Length = 324 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 23/126 (18%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + C +C DT G D + +E + E + TGGE Sbjct: 19 DRCNFDCVYCHNEGLGDTR--GPMEPGDDEMGTDDVVRFLE---VAREFDVGKVKFTGGE 73 Query: 95 PLLQVDVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS-----PKAGCDLK 142 P+L+ D+ I G E ++ TNGT P G+ + VS PKA ++ Sbjct: 74 PMLREDLEEIIRRTPDGMETSLTTNGTFLPGRAEELRKAGLSRVNVSQDALDPKAFAEVT 133 Query: 143 IKGGQE 148 G + Sbjct: 134 KSGAYD 139 >gi|15842680|ref|NP_337717.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis CDC1551] gi|254233733|ref|ZP_04927058.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis C] gi|13882999|gb|AAK47531.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis CDC1551] gi|124599262|gb|EAY58366.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis C] Length = 368 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 28/117 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR+C + + +V +++ +++ G + R +T Sbjct: 46 CNL-----------RCRYCMPEEHYTWLPRQDLLSVKEISAIVDVFLSVGVSKVR---IT 91 Query: 92 GGEPLLQVDVP-LIQAL-----NKRGFE-IAVETNGTIEPP-------QGIDWICVS 134 GGEPL++ D+P +++ L G +A+ TNG + G+ I VS Sbjct: 92 GGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITTNGVLLADRVDGLKAAGMKRITVS 148 >gi|24379898|ref|NP_721853.1| putative coenzyme PQQ synthesis protein [Streptococcus mutans UA159] gi|24377875|gb|AAN59159.1|AE014982_8 putative coenzyme PQQ synthesis protein [Streptococcus mutans UA159] Length = 371 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 13/109 (11%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L +R + C +C + G +K G +V++L + E + G +TGG Sbjct: 10 LVDVCVTNRCNLSCSYC-SAEAGPFASKKGEMSVEKLDSIFRELNLMGVPR---VGVTGG 65 Query: 94 EPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ--------GIDWICV 133 EP ++ D + +++A +K F + TNG + +D ICV Sbjct: 66 EPFIRDDILDILKAFDKYHFAKVLNTNGNLITDSVAKELSKLHLDRICV 114 >gi|31794288|ref|NP_856781.1| molybdenum cofactor biosynthesis protein A [Mycobacterium bovis AF2122/97] gi|59798458|sp|Q7TX84|MOAA1_MYCBO RecName: Full=Molybdenum cofactor biosynthesis protein A 1 gi|31619883|emb|CAD96823.1| PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A MOAA1 [Mycobacterium bovis AF2122/97] Length = 359 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 28/117 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR+C + + +V +++ +++ G + R +T Sbjct: 37 CNL-----------RCRYCMPEEHYTWLPRQDLLSVKEISAIVDVFLSVGVSKVR---IT 82 Query: 92 GGEPLLQVDVP-LIQAL-----NKRGFE-IAVETNGTIEPP-------QGIDWICVS 134 GGEPL++ D+P +++ L G +A+ TNG + G+ I VS Sbjct: 83 GGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITTNGVLLADRVDGLKAAGMKRITVS 139 >gi|57117055|ref|YP_177925.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis H37Rv] gi|121638994|ref|YP_979218.1| putative molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662963|ref|YP_001284486.1| molybdenum cofactor biosynthesis protein A1 [Mycobacterium tuberculosis H37Ra] gi|148824301|ref|YP_001289055.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis F11] gi|224991486|ref|YP_002646175.1| putative molybdenum cofactor biosynthesis protein A [Mycobacterium bovis BCG str. Tokyo 172] gi|253797790|ref|YP_003030791.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis KZN 1435] gi|254365737|ref|ZP_04981782.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis str. Haarlem] gi|260202251|ref|ZP_05769742.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis T46] gi|260206444|ref|ZP_05773935.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis K85] gi|289444673|ref|ZP_06434417.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis T46] gi|289553099|ref|ZP_06442309.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis KZN 605] gi|289571317|ref|ZP_06451544.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis T17] gi|289575821|ref|ZP_06456048.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis K85] gi|289746919|ref|ZP_06506297.1| molybdenum cofactor biosynthesis protein A1 [Mycobacterium tuberculosis 02_1987] gi|289751785|ref|ZP_06511163.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis T92] gi|289755228|ref|ZP_06514606.1| molybdenum cofactor biosynthesis protein A1 [Mycobacterium tuberculosis EAS054] gi|289759236|ref|ZP_06518614.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis T85] gi|289763289|ref|ZP_06522667.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis GM 1503] gi|297635744|ref|ZP_06953524.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis KZN 4207] gi|297732742|ref|ZP_06961860.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis KZN R506] gi|306804898|ref|ZP_07441566.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu008] gi|306809089|ref|ZP_07445757.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu007] gi|313660075|ref|ZP_07816955.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis KZN V2475] gi|3024133|sp|O05786|MOAA1_MYCTU RecName: Full=Molybdenum cofactor biosynthesis protein A 1 gi|38490320|emb|CAE55548.1| PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A MOAA1 [Mycobacterium tuberculosis H37Rv] gi|121494642|emb|CAL73123.1| Probable molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134151250|gb|EBA43295.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis str. Haarlem] gi|148507115|gb|ABQ74924.1| molybdenum cofactor biosynthesis protein A1 [Mycobacterium tuberculosis H37Ra] gi|148722828|gb|ABR07453.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis F11] gi|224774601|dbj|BAH27407.1| putative molybdenum cofactor biosynthesis protein A [Mycobacterium bovis BCG str. Tokyo 172] gi|253319293|gb|ACT23896.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis KZN 1435] gi|289417592|gb|EFD14832.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis T46] gi|289437731|gb|EFD20224.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis KZN 605] gi|289540252|gb|EFD44830.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis K85] gi|289545071|gb|EFD48719.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis T17] gi|289687447|gb|EFD54935.1| molybdenum cofactor biosynthesis protein A1 [Mycobacterium tuberculosis 02_1987] gi|289692372|gb|EFD59801.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis T92] gi|289695815|gb|EFD63244.1| molybdenum cofactor biosynthesis protein A1 [Mycobacterium tuberculosis EAS054] gi|289710795|gb|EFD74811.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis GM 1503] gi|289714800|gb|EFD78812.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis T85] gi|308344666|gb|EFP33517.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu007] gi|308348616|gb|EFP37467.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu008] gi|323718340|gb|EGB27518.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis CDC1551A] gi|326902668|gb|EGE49601.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis W-148] gi|328457569|gb|AEB02992.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis KZN 4207] Length = 359 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 28/117 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR+C + + +V +++ +++ G + R +T Sbjct: 37 CNL-----------RCRYCMPEEHYTWLPRQDLLSVKEISAIVDVFLSVGVSKVR---IT 82 Query: 92 GGEPLLQVDVP-LIQAL-----NKRGFE-IAVETNGTIEPP-------QGIDWICVS 134 GGEPL++ D+P +++ L G +A+ TNG + G+ I VS Sbjct: 83 GGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITTNGVLLADRVDGLKAAGMKRITVS 139 >gi|118581347|ref|YP_902597.1| radical SAM domain-containing protein [Pelobacter propionicus DSM 2379] gi|118504057|gb|ABL00540.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379] Length = 358 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 22/116 (18%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL CR C ++ QG ++ + L+ E + Sbjct: 15 TQKCNLRC--------VHCR-CSSELDSSQGD----FSTQEGKTLLRE---IADFSKPVV 58 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143 VL+GGEPL++ D+ L + G + + TNG++ + AG D+K+ Sbjct: 59 VLSGGEPLMRPDIFELARCGTSLGLRMCMATNGSLVTKE-----TCRDMAGADIKM 109 >gi|116749463|ref|YP_846150.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116698527|gb|ABK17715.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB] Length = 411 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 26/116 (22%) Query: 32 CNLWSG-----REQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 CNL R + + + D++ + + D++++ +T + Sbjct: 76 CNLKCAMCTQIRHTAEIPPELSWYDSER---------ELPLSKWIDILDQ--VTAFRPRL 124 Query: 87 YCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT-------IEPPQGIDWICVS 134 + +TGGEPLL LI+ +R F V +NGT + G++ + VS Sbjct: 125 H--ITGGEPLLYPGFRELIREAKRRRFFTRVTSNGTLLAGMADLLVSLGVEVVSVS 178 >gi|298526582|ref|ZP_07013991.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis 94_M4241A] gi|298496376|gb|EFI31670.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis 94_M4241A] Length = 359 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 28/117 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR+C + + +V +++ +++ G + R +T Sbjct: 37 CNL-----------RCRYCMPEEHYTWLPRQDLLSVKEISAIVDVFLSVGVSKVR---IT 82 Query: 92 GGEPLLQVDVP-LIQAL-----NKRGFE-IAVETNGTIEPP-------QGIDWICVS 134 GGEPL++ D+P +++ L G +A+ TNG + G+ I VS Sbjct: 83 GGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITTNGVLLADRVDGLKAAGMKRITVS 139 >gi|290580122|ref|YP_003484514.1| putative coenzyme PQQ synthesis protein [Streptococcus mutans NN2025] gi|254997021|dbj|BAH87622.1| putative coenzyme PQQ synthesis protein [Streptococcus mutans NN2025] Length = 371 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 13/109 (11%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L +R + C +C + G +K G +V++L + E + G +TGG Sbjct: 10 LVDVCVTNRCNLSCSYC-SAEAGPFASKKGEMSVEKLDSIFRELNLMGVPR---VGVTGG 65 Query: 94 EPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ--------GIDWICV 133 EP ++ D + +++A +K F + TNG + +D ICV Sbjct: 66 EPFIRDDILDILKAFDKYHFAKVLNTNGNLITDSVAKELSKLHLDRICV 114 >gi|238763316|ref|ZP_04624280.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia kristensenii ATCC 33638] gi|238698415|gb|EEP91168.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia kristensenii ATCC 33638] Length = 246 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 44/184 (23%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G V++L Sbjct: 25 VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134 G +GGE +LQ + +A ++ G ++TNG + + +D Sbjct: 68 NASGGGVTASGGEAILQAEFVRDWFRACHEEGIHTCLDTNGFVRRYDPVIDELLD----- 122 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 DL + +++ Q V N+ +F R+ + N I Y Sbjct: 123 ---ATDLVMLDLKQMDDSVHQNLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV 171 Query: 195 NPKW 198 P W Sbjct: 172 -PGW 174 >gi|218898660|ref|YP_002447071.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus G9842] gi|218544787|gb|ACK97181.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus G9842] Length = 338 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D F+ + D++ + G ++ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ L+K G E I + TNG++ D + VS Sbjct: 75 GEPLLRRGLPKLIERLHKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126 >gi|153000804|ref|YP_001366485.1| radical SAM domain-containing protein [Shewanella baltica OS185] gi|151365422|gb|ABS08422.1| Radical SAM domain protein [Shewanella baltica OS185] Length = 298 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 44/121 (36%), Gaps = 17/121 (14%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCV 89 NL + S +C CDT F + Y V+++ ++ Q Sbjct: 72 NLNNKPRIRWDSERCSQCDTCFAVCPKQASPKVTHYTVEEILGILHSQR----HFINGIT 127 Query: 90 LTGGEPLLQVDVPLIQALNK--------RGFEIAVETNGTIEPPQGIDWICVSPKAGCDL 141 ++GGE LQ +P I AL K ++TNG++ + A DL Sbjct: 128 VSGGEASLQ--LPFIIALFKGIKATESLSHLSCMLDTNGSLSLTGWHKLLPFLDSAMVDL 185 Query: 142 K 142 K Sbjct: 186 K 186 >gi|91202835|emb|CAJ72474.1| similar to ribonucleoside triphosphate reductase activating protein NrdG [Candidatus Kuenenia stuttgartiensis] Length = 244 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 9/80 (11%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ--WITGEKEGRYCVLTGGEPLLQVDV-PL 103 C +C + K ++ + +++ WI G V++GGEP + ++ L Sbjct: 33 CHYCHAPHLVQTPNKLESIPLESVTKKLQQSFGWIDG------VVVSGGEPTMYKELGEL 86 Query: 104 IQALNKRGFEIAVETNGTIE 123 ++ G + ++TNGT Sbjct: 87 LKIFKDIGVLVRLDTNGTNP 106 >gi|239945644|ref|ZP_04697581.1| hypothetical protein SrosN15_31952 [Streptomyces roseosporus NRRL 15998] gi|239992114|ref|ZP_04712778.1| hypothetical protein SrosN1_32754 [Streptomyces roseosporus NRRL 11379] gi|291449102|ref|ZP_06588492.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291352049|gb|EFE78953.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 339 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 38 CNLAC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + +++ L R + + TN + + +D SP + I G +E Sbjct: 80 GGEPLMHPQIDEIVRQLVARKKYVFLCTN-AMLMRKKLDKFTPSPYFAFAVHIDGLRE 136 >gi|308369956|ref|ZP_07419659.2| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu002] gi|308325958|gb|EFP14809.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu002] Length = 351 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 28/117 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR+C + + +V +++ +++ G + R +T Sbjct: 29 CNL-----------RCRYCMPEEHYTWLPRQDLLSVKEISAIVDVFLSVGVSKVR---IT 74 Query: 92 GGEPLLQVDVP-LIQAL-----NKRGFE-IAVETNGTIEPP-------QGIDWICVS 134 GGEPL++ D+P +++ L G +A+ TNG + G+ I VS Sbjct: 75 GGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITTNGVLLADRVDGLKAAGMKRITVS 131 >gi|327480469|gb|AEA83779.1| molybdenum cofactor biosynthesis protein A [Pseudomonas stutzeri DSM 4166] Length = 331 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 30/173 (17%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F + +++L + + G K R +TGGEPL+ Sbjct: 23 DRCDFRCTYCMSEDMVFA----PRAQILTLEELYAVADAFISLGVKRIR---VTGGEPLV 75 Query: 98 QVDVPLIQALNKRGFEIAVE-----TNGTIEPP-------QGIDWICVSPKAGCDLKIKG 145 + L L + G +E TNG+ P G+ + +S LK + Sbjct: 76 RKG--LTGLLARLGARNELEDLAITTNGSQLPSLAASLREAGVRRLNIS---LDSLKRER 130 Query: 146 GQEL--KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL-AISYCFQN 195 EL + QV E F+R L + ++ L + + + Sbjct: 131 FAELTRRDRLDQVLEGIEAARSAGFKRIKLNSVVQKGRNDDEILDLVEFAIER 183 >gi|302874514|ref|YP_003843147.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|307690877|ref|ZP_07633323.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|302577371|gb|ADL51383.1| Radical SAM domain protein [Clostridium cellulovorans 743B] Length = 283 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 9/87 (10%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 + + D+ + +CR+C + D + ++++E + +TGG Sbjct: 6 VVDIQIIDKCNRKCRYC-----FGPRPNKDILSYDTIRNILDEM---SLNQINNLSITGG 57 Query: 94 EPLLQVDVP-LIQALNKRGFEIAVETN 119 EPL+ D+ ++ ++ F I++ TN Sbjct: 58 EPLMHPDIKGILSYAKEKDFNISLSTN 84 >gi|146282217|ref|YP_001172370.1| molybdenum cofactor biosynthesis protein A [Pseudomonas stutzeri A1501] gi|145570422|gb|ABP79528.1| molybdopterin biosynthetic protein A2 [Pseudomonas stutzeri A1501] Length = 331 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 30/173 (17%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F + +++L + + G K R +TGGEPL+ Sbjct: 23 DRCDFRCTYCMSEDMVFA----PRAQILTLEELYAVADAFISLGVKRIR---VTGGEPLV 75 Query: 98 QVDVPLIQALNKRGFEIAVE-----TNGTIEPP-------QGIDWICVSPKAGCDLKIKG 145 + L L + G +E TNG+ P G+ + +S LK + Sbjct: 76 RKG--LTGLLARLGARNELEDLAITTNGSQLPSLAASLHEAGVRRLNIS---LDSLKRER 130 Query: 146 GQEL--KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL-AISYCFQN 195 EL + QV E F+R L + ++ L + + + Sbjct: 131 FAELTRRDRLDQVLEGIEAARSAGFKRIKLNSVVQKGRNDDEILDLVEFAIER 183 >gi|28379672|ref|NP_786564.1| formate acetyltransferase activating enzyme [Lactobacillus plantarum WCFS1] gi|254557826|ref|YP_003064243.1| formate acetyltransferase activating enzyme [Lactobacillus plantarum JDM1] gi|300766730|ref|ZP_07076646.1| pyruvate formate-lyase activating enzyme [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|28272512|emb|CAD65436.1| formate acetyltransferase activating enzyme [Lactobacillus plantarum WCFS1] gi|254046753|gb|ACT63546.1| formate acetyltransferase activating enzyme [Lactobacillus plantarum JDM1] gi|300495681|gb|EFK30833.1| pyruvate formate-lyase activating enzyme [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 273 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 37/130 (28%) Query: 8 EIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F ++ G G R GC++ +C++C DT + Sbjct: 25 ETFGSVDGPG---------IRYVAFLQGCHM-----------RCQYCHNPDT----WKLN 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 G + D++ + + K G ++GGE L+Q+D + L + ++T Sbjct: 61 VGDQMTADEILEDAAKYRAFWGKTGG-ITVSGGESLVQIDFILDLFEKAKAMNISTCLDT 119 Query: 119 NG---TIEPP 125 +G T E P Sbjct: 120 SGQPFTREQP 129 >gi|318606276|emb|CBY27774.1| pyruvate formate-lyase activating enzyme [Yersinia enterocolitica subsp. palearctica Y11] Length = 246 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 44/184 (23%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G V++L Sbjct: 25 VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134 G +GGE +LQ + +A ++ G ++TNG + + +D Sbjct: 68 NASGGGVTASGGEAILQAEFVRDWFRACHEEGIHTCLDTNGFVRRYDPVIDELLD----- 122 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 DL + +++ Q V N+ +F R+ + N I Y Sbjct: 123 ---ATDLVMLDLKQMDDSVHQNLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV 171 Query: 195 NPKW 198 P W Sbjct: 172 -PGW 174 >gi|145592144|ref|YP_001154146.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM 13514] gi|145283912|gb|ABP51494.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 372 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 22/95 (23%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F F+GCN +C +C + G + + LA + G + Sbjct: 152 TIF--FAGCNF-----------RCVYCQNWDISQDPEAGAEASPEALAAIQVRLREEGAR 198 Query: 84 EGRYCVLTGGEPLLQVDVPLI----QALNKRGFEI 114 + GGEP ++P I + L +RG + Sbjct: 199 NINWV---GGEPT--PNIPFILESLRILARRGVNV 228 >gi|94971342|ref|YP_593390.1| GTP cyclohydrolase subunit MoaA [Candidatus Koribacter versatilis Ellin345] gi|94553392|gb|ABF43316.1| GTP cyclohydrolase subunit MoaA [Candidatus Koribacter versatilis Ellin345] Length = 338 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 20/108 (18%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QV 99 DR + +C +C G G + + D + + LTGGEPLL + Sbjct: 29 DRCNYRCVYC------RSGNNGPSFAELRFQDYVRIARVFVSLGITKIRLTGGEPLLRRD 82 Query: 100 DVPLIQALNK------RGFEIAVETNGTIEPP-------QGIDWICVS 134 + L++ L +IA+ TNG + G++ + VS Sbjct: 83 LLELVRELRALKTLDGEPLDIAITTNGHLLADLAQPLKEAGLNRVTVS 130 >gi|78356319|ref|YP_387768.1| radical-activating enzyme [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218724|gb|ABB38073.1| Radical-activating enzyme [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 309 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVE 117 T G VD++ +++E+ + + G L+GGEP Q + L++ +R AVE Sbjct: 113 TYGTTRTVDEVLNVVEQDSVFYARSGGGITLSGGEPFAQPAFALALLREARRRHIHTAVE 172 Query: 118 TNG 120 T G Sbjct: 173 TCG 175 >gi|260188145|ref|ZP_05765619.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis CPHL_A] gi|289448788|ref|ZP_06438532.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis CPHL_A] gi|289421746|gb|EFD18947.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis CPHL_A] Length = 359 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 28/117 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR+C + + +V +++ +++ G + R +T Sbjct: 37 CNL-----------RCRYCMPEEHYTWLPRQDLLSVKEISAIVDVFLSVGVSKVR---IT 82 Query: 92 GGEPLLQVDVP-LIQAL-----NKRGFE-IAVETNGTIEPP-------QGIDWICVS 134 GGEPL++ D+P +++ L G +A+ TNG + G+ I VS Sbjct: 83 GGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITTNGVLLADRVDGLKAAGMKRITVS 139 >gi|156937281|ref|YP_001435077.1| radical SAM domain-containing protein [Ignicoccus hospitalis KIN4/I] gi|156566265|gb|ABU81670.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I] Length = 515 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 18/90 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C+ C + +++ +++E+ G L+ Sbjct: 158 CNL-----------RCKHC---YQRADKPLPNELTLEEKLNVVEQLDRAGVAA---VALS 200 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 GGEP + +++ L+ R +AV TNG Sbjct: 201 GGEPTIHPHFWRVVKELSDRFIYVAVATNG 230 >gi|37525557|ref|NP_928901.1| pyruvate formate lyase-activating enzyme 1 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784985|emb|CAE13905.1| pyruvate formate-lyase 1 activating enzyme (PFL-activating enzyme) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 246 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 58/184 (31%), Gaps = 44/184 (23%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G V++L Sbjct: 25 VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKDVTVEELIKEATAYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134 G +GGE +LQ + +A + G ++TNG + + +D Sbjct: 68 NASGGGVTASGGEAVLQAEFVRDWFRACHAEGIHTCLDTNGFVRRYGPVIDELMD----- 122 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 DL + ++L Q V N+ +F R+ + N I Y Sbjct: 123 ---ATDLVMLDLKQLNDEIHQKLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV 171 Query: 195 NPKW 198 P W Sbjct: 172 -PGW 174 >gi|257784457|ref|YP_003179674.1| pyruvate formate-lyase activating enzyme [Atopobium parvulum DSM 20469] gi|257472964|gb|ACV51083.1| pyruvate formate-lyase activating enzyme [Atopobium parvulum DSM 20469] Length = 260 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 36/106 (33%), Gaps = 27/106 (25%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64 E F T+ G G R+ VF GC + +C +C DT Q G Sbjct: 17 ETFGTVDGPGT---RLVVF--TQGCPM-----------RCAYCHNPDT----WQFGIGTE 56 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110 +V ++ TGGEPL Q + AL + Sbjct: 57 TSVKEILATFNRNR--AFYRNGGITATGGEPLAQP--EFVGALFEA 98 >gi|251791924|ref|YP_003006644.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter aphrophilus NJ8700] gi|247533311|gb|ACS96557.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter aphrophilus NJ8700] Length = 246 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 59/180 (32%), Gaps = 45/180 (25%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G V++L + Sbjct: 21 IRFILFLQGC-----------LMRCKYCHNRDT----WDLHGGKEVTVEELMKEVVSYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 G +GGE +LQ + +A K G ++TNG + + +D Sbjct: 66 FMNASGGGVTASGGEAILQAEFVRDWFRACKKEGISTCLDTNGFVRHYDHVIDELMDV-- 123 Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC 192 DL + +EL Q+ + N +F + LQ + N + + Y Sbjct: 124 ------TDLVLLDLKELNDEVHQILIGVPNKRTLEFAK-YLQ-------KRNQRVWVRYV 169 >gi|229161145|ref|ZP_04289132.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus R309803] gi|228622241|gb|EEK79080.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus R309803] Length = 337 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 14/89 (15%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C TD+ +Q D++ L G ++ R LTGGE Sbjct: 22 DRCNFRCTYCMPAEVFGTDYAFLQEEC--LLTFDEIERLARLFISMGVEKIR---LTGGE 76 Query: 95 PLLQVDVP-LIQALNK-RGFE-IAVETNG 120 PLL+ D+P LI L K G + I + TNG Sbjct: 77 PLLRKDLPKLIARLAKLEGLKDIGLTTNG 105 >gi|160933483|ref|ZP_02080871.1| hypothetical protein CLOLEP_02329 [Clostridium leptum DSM 753] gi|156867360|gb|EDO60732.1| hypothetical protein CLOLEP_02329 [Clostridium leptum DSM 753] Length = 313 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 6/79 (7%) Query: 47 CRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-- 100 C C + F G G V+++ + + G L+GGE Q + Sbjct: 96 CTGCGACAQSCFTGALVMSGKEMAVEEVMSEVLQDRNYYRNSGGGVTLSGGEVAAQPEFA 155 Query: 101 VPLIQALNKRGFEIAVETN 119 V L++AL A+ETN Sbjct: 156 VELLKALKNENISTAIETN 174 >gi|121604594|ref|YP_981923.1| molybdenum cofactor biosynthesis protein A [Polaromonas naphthalenivorans CJ2] gi|120593563|gb|ABM37002.1| GTP cyclohydrolase subunit MoaA [Polaromonas naphthalenivorans CJ2] Length = 376 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 27/170 (15%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D ++ + + + +++ L G ++ R LTGGE Sbjct: 51 DRCNFRCNYCMPSEVFDKNYAFL--PQSSLLSFEEITRLATIFVAHGVEKIR---LTGGE 105 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ ++ LI+ L + + +I + TNG++ G+ + VS A D Sbjct: 106 PLLRKNLEVLIEMLARLQTPAGKPLDITLTTNGSLLAKKARSLKDAGLQRVTVSLDALDD 165 Query: 141 LKIKGGQELKLVFPQV--NVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 +G ++ V + +G + ++ G E LA Sbjct: 166 AIFRGMNDVDFPVADVLRGIEVAQRVGLAPVKINMVVKRGTNDGEILPLA 215 >gi|329897311|ref|ZP_08272029.1| Molybdenum cofactor biosynthesis protein A [gamma proteobacterium IMCC3088] gi|328921242|gb|EGG28641.1| Molybdenum cofactor biosynthesis protein A [gamma proteobacterium IMCC3088] Length = 329 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 13/87 (14%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ + ++++L+++ G K+ R LTGGEPL+ Sbjct: 19 DRCDFRCVYCMAEDMTFL----PRKEILSLEELSEIGAAFVELGGKKIR---LTGGEPLI 71 Query: 98 QVD-VPLIQALNK-RGFE-IAVETNGT 121 + D + L+++L G E +A+ TNG+ Sbjct: 72 RKDFIKLVESLGALAGLEQLAITTNGS 98 >gi|331092353|ref|ZP_08341179.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Lachnospiraceae bacterium 2_1_46FAA] gi|330401377|gb|EGG80963.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Lachnospiraceae bacterium 2_1_46FAA] Length = 171 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 19/88 (21%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 GC C C T G + ++ +IE + Sbjct: 25 QGCP-----------HHCHGCQNPETWSD-TDGTLVDEREVVQMIETNPLAKG-----VT 67 Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIA 115 +GGEP Q + L + L +G+E+A Sbjct: 68 FSGGEPFAQAESFNVLAELLKDKGYEVA 95 >gi|308232336|ref|ZP_07415756.2| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu001] gi|308372426|ref|ZP_07428640.2| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu004] gi|308373630|ref|ZP_07433114.2| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu005] gi|308378192|ref|ZP_07481852.2| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu009] gi|308379413|ref|ZP_07486196.2| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu010] gi|308380573|ref|ZP_07490415.2| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu011] gi|308214306|gb|EFO73705.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu001] gi|308333330|gb|EFP22181.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu004] gi|308336984|gb|EFP25835.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu005] gi|308353341|gb|EFP42192.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu009] gi|308357175|gb|EFP46026.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu010] gi|308361126|gb|EFP49977.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu011] Length = 344 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 28/117 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR+C + + +V +++ +++ G + R +T Sbjct: 22 CNL-----------RCRYCMPEEHYTWLPRQDLLSVKEISAIVDVFLSVGVSKVR---IT 67 Query: 92 GGEPLLQVDVP-LIQAL-----NKRGFE-IAVETNGTIEPP-------QGIDWICVS 134 GGEPL++ D+P +++ L G +A+ TNG + G+ I VS Sbjct: 68 GGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITTNGVLLADRVDGLKAAGMKRITVS 124 >gi|195541852|gb|ACF98054.1| putative heme D1 biosynthesis protein NirJ [uncultured bacterium 888] Length = 411 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + DT+F G + ++ ++++ + + E R +L+ Sbjct: 36 CNLACRHCYSISA------DTNF-------PGELSTAEVFAVLDDLYAS---EVRVLILS 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ D+ +++ GF I + +NGT+ Sbjct: 80 GGEPLLRPDLFRIVRRAKSMGFYIGLSSNGTL 111 >gi|167969718|ref|ZP_02551995.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis H37Ra] gi|215405104|ref|ZP_03417285.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis 02_1987] gi|215432065|ref|ZP_03429984.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis EAS054] gi|218754879|ref|ZP_03533675.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis GM 1503] gi|219559151|ref|ZP_03538227.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis T17] gi|254552189|ref|ZP_05142636.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|308374774|ref|ZP_07437356.2| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu006] gi|308340798|gb|EFP29649.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu006] Length = 335 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 28/117 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR+C + + +V +++ +++ G + R +T Sbjct: 13 CNL-----------RCRYCMPEEHYTWLPRQDLLSVKEISAIVDVFLSVGVSKVR---IT 58 Query: 92 GGEPLLQVDVP-LIQAL-----NKRGFE-IAVETNGTIEPP-------QGIDWICVS 134 GGEPL++ D+P +++ L G +A+ TNG + G+ I VS Sbjct: 59 GGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITTNGVLLADRVDGLKAAGMKRITVS 115 >gi|83309169|ref|YP_419433.1| Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1] gi|82944010|dbj|BAE48874.1| Predicted Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1] Length = 354 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 16/110 (14%) Query: 38 REQDRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 + +R + C +C D +G +G ++ +++E+ G K +GG Sbjct: 34 KPTNRCNHNCWYCAYRTDDLKLGEDMDEGDSIPEAKMMEIVEDVLEMGVKA---VTFSGG 90 Query: 94 -EPLLQVDVP-LIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134 EPLL +P +I+ L G ++A TNG+ + W+ VS Sbjct: 91 GEPLLYKPLPNVIERLAAGGVKVATLTNGSNLRGRVGEALARHATWVRVS 140 >gi|331270311|ref|YP_004396803.1| pyruvate formate-lyase [Clostridium botulinum BKT015925] gi|329126861|gb|AEB76806.1| pyruvate formate-lyase [Clostridium botulinum BKT015925] Length = 310 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 G V ++ ++++ + + L+GGEPL+Q + L++ G+ +ET Sbjct: 110 GEEMTVKEIIQELKKESVQFRRSNGGVTLSGGEPLMQSKFALELLKGCKSMGWHTTMET 168 >gi|308371235|ref|ZP_07424286.2| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu003] gi|308329484|gb|EFP18335.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu003] Length = 334 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 28/117 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR+C + + +V +++ +++ G + R +T Sbjct: 12 CNL-----------RCRYCMPEEHYTWLPRQDLLSVKEISAIVDVFLSVGVSKVR---IT 57 Query: 92 GGEPLLQVDVP-LIQAL-----NKRGFE-IAVETNGTIEPP-------QGIDWICVS 134 GGEPL++ D+P +++ L G +A+ TNG + G+ I VS Sbjct: 58 GGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITTNGVLLADRVDGLKAAGMKRITVS 114 >gi|326317352|ref|YP_004235024.1| molybdenum cofactor biosynthesis protein A [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374188|gb|ADX46457.1| molybdenum cofactor biosynthesis protein A [Acidovorax avenae subsp. avenae ATCC 19860] Length = 386 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 61/157 (38%), Gaps = 33/157 (21%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D ++ + G + ++++ L G ++ R LTG Sbjct: 55 DRCNFRCSYCMPKEVFGKDYPYL----SHGDLLSFEEISRLARVFLAHGVRKIR---LTG 107 Query: 93 GEPLLQVDVP-LIQALNKRGFE--------IAVETNGTIEP-------PQGIDWICVSPK 136 GEPLL+ + L++ L G + + TNG++ G+ + VS Sbjct: 108 GEPLLRRHLENLVEQL--AGLRTTEGRVPDLTLTTNGSLLARKARALRDAGLARLTVSLD 165 Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173 + D + ++ +V E FER + Sbjct: 166 SLQDSVFRRMNDVDFPVAEVLSGIEAAQAAGFERIKV 202 >gi|205354307|ref|YP_002228108.1| pyruvate formate lyase II activase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274088|emb|CAR39096.1| pyruvate formate-lyase 2 activating enzyme (ec 1.97.1.4) (pfl-activating enzyme) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629431|gb|EGE35774.1| pyruvate formate lyase II activase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 292 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS--------------AQCRF 49 IF +L G+G VF F GC + S +C Sbjct: 24 IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLRCTP 78 Query: 50 C----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 C D G + G +D+L + + I G L+GGE L+Q Sbjct: 79 CLRDADECPSGAFESIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 138 Query: 104 IQALNKRGFEIAVETNG 120 +Q L + G A+ET G Sbjct: 139 LQRLRRWGVPCAIETAG 155 >gi|94985862|ref|YP_605226.1| molybdenum cofactor biosynthesis protein A [Deinococcus geothermalis DSM 11300] gi|94556143|gb|ABF46057.1| Molybdenum cofactor biosynthesis protein A [Deinococcus geothermalis DSM 11300] Length = 333 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + + T +++ L G ++ R LTG Sbjct: 19 DRCNLRCTYCMPAEVFGPD--YAFLPRT--ELLTFEEIERLARAFVDLGVRKLR---LTG 71 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ D+P L+ L + G E IA+ TNG + P D + VS Sbjct: 72 GEPLLRRDLPELVARLGRIAGVEDIALTTNGLLLPRLAADLQRAGLKRVTVS 123 >gi|313675791|ref|YP_004053787.1| radical sam domain protein [Marivirga tractuosa DSM 4126] gi|312942489|gb|ADR21679.1| Radical SAM domain protein [Marivirga tractuosa DSM 4126] Length = 326 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 14/98 (14%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90 CN + R +A C FCD + + + + +V Q ++ + + Sbjct: 10 CNYYVTY---RCNASCHFCD---IWEKPSPYINKADVKQNLKDLKRLGV------KVIDF 57 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127 TGGEPLL ++ + + GF + TNG + P + Sbjct: 58 TGGEPLLHNEIHDFLMMAKEIGFITTLTTNGLLYPKKA 95 >gi|212704755|ref|ZP_03312883.1| hypothetical protein DESPIG_02819 [Desulfovibrio piger ATCC 29098] gi|212671818|gb|EEB32301.1| hypothetical protein DESPIG_02819 [Desulfovibrio piger ATCC 29098] Length = 399 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 13/107 (12%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 G A C L + + C+ C G ++ ++ LI+ Sbjct: 48 GTPA-------CKLIAWEVTRSCNLACKHC--RAEAHPEPYPGEFSTEEAKALIDTFPQV 98 Query: 81 GEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 G + TGG+P+++ DV L+ + +G A NGT+ P+ Sbjct: 99 G---NPIIIFTGGDPMMRPDVYELVAYAHNKGLTCAFSPNGTLITPE 142 >gi|251798581|ref|YP_003013312.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp. JDR-2] gi|247546207|gb|ACT03226.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp. JDR-2] Length = 333 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 8/84 (9%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C G++ + D + ++++ G + R +TGGEPL++ Sbjct: 21 DRCNLRCLYC-MPEEGMEFADASHLLSYDHIVEVVQTAAELGITKLR---ITGGEPLIRP 76 Query: 100 DVP-LIQALNK-RGFE-IAVETNG 120 D+ LI+ L G E IA+ TNG Sbjct: 77 DLDSLIRRLKAIPGIEDIALTTNG 100 >gi|120611327|ref|YP_971005.1| molybdenum cofactor biosynthesis protein A [Acidovorax citrulli AAC00-1] gi|120589791|gb|ABM33231.1| GTP cyclohydrolase subunit MoaA [Acidovorax citrulli AAC00-1] Length = 386 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 55/150 (36%), Gaps = 19/150 (12%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C V + + ++ ++ + R LTGGEPLL+ Sbjct: 55 DRCNFRCSYCMPKEVFGKDYPYLSHGDLLSFEEITRLARVFLAHGVRKIRLTGGEPLLRR 114 Query: 100 DVP-LIQALNKRGFEIA--------VETNGTIEP-------PQGIDWICVSPKAGCDLKI 143 + L++ L G A + TNG++ G+ + VS + D Sbjct: 115 HLENLVEQL--AGLRTAEGRVPDLTLTTNGSLLARKARALRDAGLARLTVSLDSLQDSVF 172 Query: 144 KGGQELKLVFPQVNVSPENYIGFDFERFSL 173 + ++ +V E FER + Sbjct: 173 RRMNDVDFPVAEVLSGIEAAQAAGFERIKV 202 >gi|18976674|ref|NP_578031.1| co-factor modifying protein [Pyrococcus furiosus DSM 3638] gi|18892249|gb|AAL80426.1| co-factor modifying protein [Pyrococcus furiosus DSM 3638] Length = 284 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 18/120 (15%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DT----DFVGIQGTKGGRYNVDQLADLIEEQWITG 81 F GCN R + C T D++ + K V+++ ++E++ + Sbjct: 64 FDGCNWRCKYCVWREVTRWSLCLPEKTRQQLDYLWKE-RKVRYLTVEEVERILEKERVKI 122 Query: 82 EKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDW---ICVSPKA 137 G GGEP L ++ PL++AL KRG ++ + TNG + +D I S KA Sbjct: 123 AFLG------GGEPTLDPELKPLMKALAKRGIKVWLVTNGEGLDDEIVDIAYGITFSIKA 176 >gi|302343931|ref|YP_003808460.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075] gi|301640544|gb|ADK85866.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075] Length = 337 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 5/76 (6%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LI 104 C FC ++ + ++A ++GGEPLL ++ L Sbjct: 27 ACIFCYDNYRVKGSRPAA--SAQEIAADAARMAARMGVGA--VAVSGGEPLLYAELEQLT 82 Query: 105 QALNKRGFEIAVETNG 120 + L G + V TNG Sbjct: 83 RLLKAAGLFVCVMTNG 98 >gi|288932367|ref|YP_003436427.1| radical SAM protein [Ferroglobus placidus DSM 10642] gi|288894615|gb|ADC66152.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642] Length = 506 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 4/89 (4%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L + +R + C +C F + ++Q+ ++ LTGG Sbjct: 92 LLNIVLTNRCNIACWYC--FFYAKKAGYVYEPTIEQIRHMVRVAKNLKPVGCNAVQLTGG 149 Query: 94 EPLLQVDV-PLIQALNKRGF-EIAVETNG 120 EP L+ D+ +++A+ + G + + TNG Sbjct: 150 EPTLRDDLVEIVKAIKEEGIDHVQLNTNG 178 >gi|308181906|ref|YP_003926034.1| formate acetyltransferase activating enzyme [Lactobacillus plantarum subsp. plantarum ST-III] gi|308047397|gb|ADN99940.1| formate acetyltransferase activating enzyme [Lactobacillus plantarum subsp. plantarum ST-III] Length = 273 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 37/130 (28%) Query: 8 EIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F ++ G G R GC++ +C++C DT + Sbjct: 25 ETFGSVDGPG---------IRYVAFLQGCHM-----------RCQYCHNPDT----WKLN 60 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 G + D++ + + K G ++GGE L+Q+D + L + ++T Sbjct: 61 VGDQMTADEILEDAAKYRAFWGKTGG-ITVSGGESLVQIDFILDLFEKAKAMNISTCLDT 119 Query: 119 NG---TIEPP 125 +G T E P Sbjct: 120 SGQPFTREQP 129 >gi|296272134|ref|YP_003654765.1| molybdenum cofactor biosynthesis protein A [Arcobacter nitrofigilis DSM 7299] gi|296096309|gb|ADG92259.1| molybdenum cofactor biosynthesis protein A [Arcobacter nitrofigilis DSM 7299] Length = 320 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 69/170 (40%), Gaps = 24/170 (14%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 +R + +C++C + F + + ++L + I+ G K+ R +TGGEPLL+ Sbjct: 19 ERCNFRCQYCMPEKPFSWVPKE--ELLSYEELFEFIKVCIDGGVKKVR---ITGGEPLLR 73 Query: 99 VDVP-LIQALNK--RGFEIAVETNGTIEP-------PQGIDWICV---SPKAGCDLKIKG 145 + I+ +++ ++A+ TNG + P G+ + + S K K+ Sbjct: 74 DGLDNFIRMISEYKNDIDLALTTNGYLLPKVAQKLADAGLKRLNISLDSLKPEVAQKVAQ 133 Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 LK V + + + + PM G E + I +C Sbjct: 134 KDILKTVLKGIEAADKAGLKIKINTV---PMQGINDSELCD-IIEFCKTR 179 >gi|23097891|ref|NP_691357.1| hypothetical protein OB0436 [Oceanobacillus iheyensis HTE831] gi|22776115|dbj|BAC12392.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 376 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 56/162 (34%), Gaps = 32/162 (19%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99 +C C + Q + D L + E+ + R +TGGEP++ Q Sbjct: 45 RCAHCAVGYTLQQ------MDPDALPMELIEKRLDEIPHLRTLSITGGEPMMNKKSVRQY 98 Query: 100 DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159 +PL++ ++RG + + +N T+ P + + L + V Sbjct: 99 VLPLLKYAHERGIKTQMNSNLTL------------PYNRYEEIVPYLDVLHISHNWGTVE 146 Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLS 201 GF MD EEN +N + RLS Sbjct: 147 EFAETGFAL-------MDRKPSEENRAKYFDRMVENAQ-RLS 180 >gi|238927735|ref|ZP_04659495.1| radical SAM domain protein [Selenomonas flueggei ATCC 43531] gi|238884451|gb|EEQ48089.1| radical SAM domain protein [Selenomonas flueggei ATCC 43531] Length = 396 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +CR C ++ G T G ++ I++ E + Sbjct: 47 CNL-----------RCRHC---YMESDGQTYDGELTTEEAKRFIDDL---AEFRVPVLLF 89 Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +GGEPL++ D L + KRG + TNGT+ Sbjct: 90 SGGEPLIRPDFFELAEHAAKRGVRPTLSTNGTL 122 >gi|222110904|ref|YP_002553168.1| radical sam domain-containing protein [Acidovorax ebreus TPSY] gi|221730348|gb|ACM33168.1| Radical SAM domain protein [Acidovorax ebreus TPSY] Length = 406 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 16/112 (14%) Query: 33 NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 + R + C+ C + G ++ ++ ++++ G +L+ Sbjct: 31 PVVIWNLIRRCNLTCKHC---YALSADHDYAGELSLQEVYTVMDDLKAFGVPA---LILS 84 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGT-IEPP-------QGIDWICVS 134 GGEPLL+ D+ + GF + TNGT I+ P G D++ +S Sbjct: 85 GGEPLLRPDLFEIAARARDLGFYTGLSTNGTLIDAPMAARIAGAGFDYVGIS 136 >gi|121594266|ref|YP_986162.1| radical SAM domain-containing protein [Acidovorax sp. JS42] gi|120606346|gb|ABM42086.1| Radical SAM domain protein [Acidovorax sp. JS42] Length = 406 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 16/112 (14%) Query: 33 NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 + R + C+ C + G ++ ++ ++++ G +L+ Sbjct: 31 PVVIWNLIRRCNLTCKHC---YALSADHDYAGELSLQEVYTVMDDLKAFGVPA---LILS 84 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGT-IEPP-------QGIDWICVS 134 GGEPLL+ D+ + GF + TNGT I+ P G D++ +S Sbjct: 85 GGEPLLRPDLFEIAARARDLGFYTGLSTNGTLIDAPMAARIAGAGFDYVGIS 136 >gi|51595746|ref|YP_069937.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pseudotuberculosis IP 32953] gi|108806669|ref|YP_650585.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis Antiqua] gi|108812757|ref|YP_648524.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis Nepal516] gi|145599586|ref|YP_001163662.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis Pestoides F] gi|149366638|ref|ZP_01888672.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis CA88-4125] gi|153946839|ref|YP_001401556.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pseudotuberculosis IP 31758] gi|161484775|ref|NP_670093.2| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis KIM 10] gi|161511413|ref|NP_992578.2| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis biovar Microtus str. 91001] gi|162421299|ref|YP_001606121.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis Angola] gi|165924437|ref|ZP_02220269.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Orientalis str. F1991016] gi|165939007|ref|ZP_02227560.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Orientalis str. IP275] gi|166009871|ref|ZP_02230769.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Antiqua str. E1979001] gi|166211440|ref|ZP_02237475.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Antiqua str. B42003004] gi|167400062|ref|ZP_02305580.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419547|ref|ZP_02311300.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424126|ref|ZP_02315879.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470141|ref|ZP_02334845.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis FV-1] gi|218928529|ref|YP_002346404.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis CO92] gi|229841350|ref|ZP_04461509.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843455|ref|ZP_04463601.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar Orientalis str. India 195] gi|229903166|ref|ZP_04518279.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis Nepal516] gi|270486961|ref|ZP_06204035.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis KIM D27] gi|294503371|ref|YP_003567433.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis Z176003] gi|51589028|emb|CAH20646.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pseudotuberculosis IP 32953] gi|108776405|gb|ABG18924.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis Nepal516] gi|108778582|gb|ABG12640.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis Antiqua] gi|115347140|emb|CAL20033.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis CO92] gi|145211282|gb|ABP40689.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis Pestoides F] gi|149291012|gb|EDM41087.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis CA88-4125] gi|152958334|gb|ABS45795.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pseudotuberculosis IP 31758] gi|162354114|gb|ABX88062.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis Angola] gi|165913154|gb|EDR31778.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Orientalis str. IP275] gi|165923497|gb|EDR40629.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Orientalis str. F1991016] gi|165991267|gb|EDR43568.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Antiqua str. E1979001] gi|166207211|gb|EDR51691.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Antiqua str. B42003004] gi|166962288|gb|EDR58309.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050770|gb|EDR62178.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056975|gb|EDR66738.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678936|gb|EEO75039.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis Nepal516] gi|229689802|gb|EEO81863.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar Orientalis str. India 195] gi|229697716|gb|EEO87763.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar Orientalis str. PEXU2] gi|262361411|gb|ACY58132.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis D106004] gi|262365052|gb|ACY61609.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis D182038] gi|270335465|gb|EFA46242.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis KIM D27] gi|294353830|gb|ADE64171.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis Z176003] gi|320015759|gb|ADV99330.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 244 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 59/184 (32%), Gaps = 44/184 (23%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G V++L Sbjct: 23 VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFM 65 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134 G +GGE +LQ + +A +K G ++TNG + + +D Sbjct: 66 NASGGGVTASGGEAILQAEFVRDWFRACHKEGIHTCLDTNGFVRRYDPVIDELLD----- 120 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 DL + +++ Q V N+ +F R+ + N I Y Sbjct: 121 ---ATDLVMLDLKQMDDSIHQNLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV 169 Query: 195 NPKW 198 P W Sbjct: 170 -PGW 172 >gi|170024904|ref|YP_001721409.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pseudotuberculosis YPIII] gi|186894824|ref|YP_001871936.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pseudotuberculosis PB1/+] gi|21959685|gb|AAM86344.1|AE013882_5 pyruvate formate lyase activating enzyme 1 [Yersinia pestis KIM 10] gi|45435898|gb|AAS61455.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar Microtus str. 91001] gi|169751438|gb|ACA68956.1| pyruvate formate-lyase activating enzyme [Yersinia pseudotuberculosis YPIII] gi|186697850|gb|ACC88479.1| pyruvate formate-lyase activating enzyme [Yersinia pseudotuberculosis PB1/+] Length = 265 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 59/184 (32%), Gaps = 44/184 (23%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G V++L Sbjct: 44 VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFM 86 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134 G +GGE +LQ + +A +K G ++TNG + + +D Sbjct: 87 NASGGGVTASGGEAILQAEFVRDWFRACHKEGIHTCLDTNGFVRRYDPVIDELLD----- 141 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 DL + +++ Q V N+ +F R+ + N I Y Sbjct: 142 ---ATDLVMLDLKQMDDSIHQNLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV 190 Query: 195 NPKW 198 P W Sbjct: 191 -PGW 193 >gi|56475902|ref|YP_157491.1| heme D1 biosynthesis protein NIRJ [Aromatoleum aromaticum EbN1] gi|56311945|emb|CAI06590.1| Heme D1 biosynthesis protein NIRJ [Aromatoleum aromaticum EbN1] Length = 401 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 17/101 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + DTDF G + ++ ++++ +L+ Sbjct: 36 CNLTCKHCYSISA------DTDF-------PGELSTAEVFGVMDDLKA---FSVPVLILS 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GGEPLL+ D+ + + K GF + + +NGT+ ID I Sbjct: 80 GGEPLLRPDIFEIGRHAKKMGFYVGLSSNGTLIGESNIDRI 120 >gi|116749748|ref|YP_846435.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116698812|gb|ABK18000.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB] Length = 360 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL G + + D+ L ++ +E T Sbjct: 22 CNLRCGHCGAAAGI--------------PRQRELSTDEALALCDQLPHLLVQE---VDFT 64 Query: 92 GGEPLLQVDVPLI-QALNKRGFEIAVETNGTI 122 GGEPLL+ D PL+ + L + + V TNGT+ Sbjct: 65 GGEPLLRPDWPLLAKRLRDQDITVRVVTNGTL 96 >gi|308186250|ref|YP_003930381.1| pyruvate formate lyase activating enzyme 1 [Pantoea vagans C9-1] gi|308056760|gb|ADO08932.1| pyruvate formate lyase activating enzyme 1 [Pantoea vagans C9-1] Length = 246 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 50/153 (32%), Gaps = 28/153 (18%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G +V+ L + G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEISVEALMADVLSYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKAGCDL 141 +GGE +LQ + +A G ++TNG ID + V+ DL Sbjct: 72 GGVTASGGEAILQAEFVRDWFRACKAEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMIDL 131 Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174 K Q+ V N+ DF R LQ Sbjct: 132 KQMNDD-----VHQILVGVSNHRTLDFAR-YLQ 158 >gi|304390340|ref|ZP_07372293.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326096|gb|EFL93341.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 266 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 47/150 (31%), Gaps = 37/150 (24%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +VF GC C +C + I Y L +L+ + Sbjct: 35 VASVF--LQGCP-----------WNCGYC-QNVAIIDPRAPAGYQEADLWELLGRRRGLL 80 Query: 82 EKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICV 133 + V +GGEP Q +P Q GF + + T G +DW+ + Sbjct: 81 DG----VVFSGGEPTRQAALMPAAQRARDLGFLLGLHTGGAYPKRLEQLLNAGLLDWVGL 136 Query: 134 SPKAGCDLKIKGGQELKLVFPQVNVSPENY 163 K L +PQV P+ + Sbjct: 137 DVKG-----------LAQNYPQVVGRPQAH 155 >gi|298674076|ref|YP_003725826.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanohalobium evestigatum Z-7303] gi|298287064|gb|ADI73030.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanohalobium evestigatum Z-7303] Length = 251 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 F GC +C +C T ++ ++ I + I + Sbjct: 26 FRGCPF-----------RCPYC---HNYELLTGSNFVDISEIESQINKSKIFVDN----V 67 Query: 89 VLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE 123 V TGGEP +Q D L+ + + + TNG Sbjct: 68 VFTGGEPFMQPDALKHLVGFAKQNNLLVGINTNGFYP 104 >gi|110668841|ref|YP_658652.1| molybdenum cofactor biosynthesis protein A [Haloquadratum walsbyi DSM 16790] gi|121692152|sp|Q18G49|MOAA_HALWD RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|109626588|emb|CAJ53052.1| molybdenum cofactor biosynthesis protein A [Haloquadratum walsbyi DSM 16790] Length = 323 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 76/198 (38%), Gaps = 35/198 (17%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + C +C DT G + + D + +E + + + TGGE Sbjct: 19 DRCNFDCVYCHNEGLGDTR--GPMDPQDDEMSTDDVVRFLE---VVSQFDIGKVKFTGGE 73 Query: 95 PLLQVDVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS-----PKAGCDLK 142 P+L+ D+ I E+++ TNGT P G++ + VS P ++ Sbjct: 74 PMLRDDLTEIIRRTPSSMEVSMTTNGTFLPGRAGALREAGLERVNVSQDALDPDEFAEIT 133 Query: 143 IKGGQE--LKLVFPQVNVSPE----NYIGFDFERFSLQPMDGPFLEEN-TNLA-ISYCFQ 194 G + L+ V V+ N + F+ ++ M E L I Y + Sbjct: 134 KSGAYDRVLEGVEAAVDAGLAPVKLNMVVFEHTAEYVEDMVNHVSENAGLQLQLIEYMPE 193 Query: 195 ---NPKWRLSVQ-THKFI 208 +P+W + +Q H ++ Sbjct: 194 LTGHPEWNIDIQRVHDWL 211 >gi|328543729|ref|YP_004303838.1| Metallo cofactor biosynthesis protein, conjectural [Polymorphum gilvum SL003B-26A1] gi|326413473|gb|ADZ70536.1| Metallo cofactor biosynthesis protein, conjectural [Polymorphum gilvum SL003B-26A1] Length = 348 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 8/84 (9%) Query: 40 QDRLSAQCRFCDTDFVGIQGTKGGRYNVD-QLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 R + +CR C GI+ R + +LA + +Q + TGGEPLL Sbjct: 17 SHRCNIECRHC-----GIESGPRNRARMTLELARDVIQQAAELDPPATTIAFTGGEPLLY 71 Query: 99 VD--VPLIQALNKRGFEIAVETNG 120 L+ + G + TNG Sbjct: 72 PRETEALLDLAHGLGLSTRIVTNG 95 >gi|18977019|ref|NP_578376.1| heme biosynthesis protein [Pyrococcus furiosus DSM 3638] gi|18892652|gb|AAL80771.1| heme biosynthesis protein [Pyrococcus furiosus DSM 3638] Length = 548 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 25/152 (16%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104 +C+ C + +++ L+++ G L+GGEP + + ++ Sbjct: 158 RCKHC---YQRADRPLSSELTLEEKLMLVDQLDKAGVAA---VALSGGEPTIHPHFLRIV 211 Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENY 163 + L+ RG +V TNG W+ + K + IK G LK V V+ PE + Sbjct: 212 KELSSRGIHTSVATNG---------WV-FADKEKLEEAIKAG--LKYVEVSVDSAKPEKH 259 Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 F P + A+ + Sbjct: 260 DEFRG-----IPGAWERAVKALENAVELGISH 286 >gi|186685355|ref|YP_001868551.1| radical SAM domain-containing protein [Nostoc punctiforme PCC 73102] gi|186467807|gb|ACC83608.1| Radical SAM domain protein [Nostoc punctiforme PCC 73102] Length = 339 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 + GGEPLL + ++Q L +R I + TNG + + +D SP + Sbjct: 72 GAPVVSIPGGEPLLHPQIDEIVQGLIERKKYIYLCTNG-LLLEKSLDKFQPSPYLTFSVH 130 Query: 143 IKGGQEL 149 + G +EL Sbjct: 131 LDGMREL 137 >gi|325113309|ref|YP_004277254.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Acidiphilium multivorum AIU301] gi|325052846|dbj|BAJ83181.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Acidiphilium multivorum AIU301] Length = 235 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 44/141 (31%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 GR+A F R GC L +CR+C + G + + L L Sbjct: 22 GRLAATFFLR--GCPL-----------RCRYC---HNADLQARRGTFPLRWLEALTWLDQ 65 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPK- 136 G + V +GGEP + + +I+ + GFE+A+ T G VSPK Sbjct: 66 RRGLLDS--VVFSGGEPTMDRCLEQMIRDVRSLGFEVALHTAG------------VSPKR 111 Query: 137 ----------AGCDLKIKGGQ 147 G D+K G Sbjct: 112 LGRVLPLLQWVGLDIKAPFGD 132 >gi|71908874|ref|YP_286461.1| radical SAM family protein [Dechloromonas aromatica RCB] gi|71848495|gb|AAZ47991.1| Radical SAM [Dechloromonas aromatica RCB] Length = 379 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + DT+F G + +Q+ ++++ + +L+ Sbjct: 36 CNLTCKHCYSISA------DTNF-------PGELSTEQVFTVMDDLK---GFKVPVLILS 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ D+ + + +GF + + +NGT+ Sbjct: 80 GGEPLLRPDIYDIAKRAKAKGFYVGLSSNGTL 111 >gi|323141180|ref|ZP_08076081.1| molybdenum cofactor biosynthesis protein A [Phascolarctobacterium sp. YIT 12067] gi|322414323|gb|EFY05141.1| molybdenum cofactor biosynthesis protein A [Phascolarctobacterium sp. YIT 12067] Length = 318 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 14/104 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + CR+C V T ++L + G ++ + +TGGEPLL+ Sbjct: 18 DRCNLHCRYC-QPEVSEHVTHNEILRYEELLRICRAALQLGIRKFK---ITGGEPLLRKG 73 Query: 101 V-PLIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134 I L + G E + + TNGT+ G+D I VS Sbjct: 74 CSDFIANLKQLEGAEQVTLTTNGTLLSNQLPALIAAGVDSINVS 117 >gi|114567375|ref|YP_754529.1| molybdenum cofactor biosynthesis protein A [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122317679|sp|Q0AVU6|MOAA_SYNWW RecName: Full=Molybdenum cofactor biosynthesis protein A gi|114338310|gb|ABI69158.1| GTP cyclohydrolase subunit MoaA [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 326 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 6/93 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +CR+C G+ Y++ L ++ I E + LTG Sbjct: 10 NYMRISLTDRCNLRCRYC-MPETGVDNLTH--YSILSLEEMARLVRIASELGIQKIRLTG 66 Query: 93 GEPLLQVDVP-LIQALNKRGF--EIAVETNGTI 122 GEPL++ +VP LI + + +IA+ TNGT+ Sbjct: 67 GEPLVRRNVPQLISYIAQIPRIDDIALTTNGTL 99 >gi|194334917|ref|YP_002016777.1| molybdenum cofactor biosynthesis protein A [Prosthecochloris aestuarii DSM 271] gi|194312735|gb|ACF47130.1| molybdenum cofactor biosynthesis protein A [Prosthecochloris aestuarii DSM 271] Length = 336 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 27/121 (22%) Query: 27 CRFSG---CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 R + CNL +C +C + + +G + D++ ++ G Sbjct: 26 VRLAVTSQCNL-----------RCMYCMREEHTVYNPEGEALSGDEIVSMLAVLARMGVS 74 Query: 84 EGRYCVLTGGEPLL-QVDVPLIQALNK-RGFE-IAVETNG-------TIEPPQGIDWICV 133 + RY TGGEPLL Q V L++ G E +++ TNG GID I Sbjct: 75 KVRY---TGGEPLLRQDIVRLVRDAKALEGIETVSLTTNGLLLDRYLDDLVAAGIDAINF 131 Query: 134 S 134 S Sbjct: 132 S 132 >gi|261414525|ref|YP_003248208.1| Radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261370981|gb|ACX73726.1| Radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327031|gb|ADL26232.1| radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 358 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 15/90 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C +D V R + ++ D + + V+T Sbjct: 38 CNL-----------HCLHCGSDCVADAIPDMPREDFMRVLDGVS---PHVDPSNFIVVIT 83 Query: 92 GGEPLLQVDVPLI-QALNKRGFEIAVETNG 120 GGEPL++ D+ I + + RG+ + TNG Sbjct: 84 GGEPLMRADLEEIGKDIKARGYPWGMVTNG 113 >gi|187735294|ref|YP_001877406.1| Radical SAM domain protein [Akkermansia muciniphila ATCC BAA-835] gi|187425346|gb|ACD04625.1| Radical SAM domain protein [Akkermansia muciniphila ATCC BAA-835] Length = 415 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 17/97 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL SA+ F G +D LAD + + + Sbjct: 57 CNLKCVHCYADASAR------KFKGELDWDQCCAVIDDLAD----------YKVNALLFS 100 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQG 127 GGEPL+ + L++ +G ++ + TNGT P+ Sbjct: 101 GGEPLVHPRFMELLERATGKGLKVTISTNGTRITPEA 137 >gi|269104749|ref|ZP_06157445.1| putative pyruvate formate-lyase 3 activating enzyme [Photobacterium damselae subsp. damselae CIP 102761] gi|268161389|gb|EEZ39886.1| putative pyruvate formate-lyase 3 activating enzyme [Photobacterium damselae subsp. damselae CIP 102761] Length = 313 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 G D L D++ + ++ +GGEPL+Q D+ L Q L+ A+E+ Sbjct: 114 GEEAKSDMLFDILMKDKAFYDQSQGGVTFSGGEPLMQADLVAELAQRLHDNQVSTAIESC 173 Query: 120 GTIEP 124 + Sbjct: 174 MHVPW 178 >gi|172065179|ref|YP_001815891.1| coenzyme PQQ biosynthesis protein E [Burkholderia ambifaria MC40-6] gi|171997421|gb|ACB68338.1| coenzyme PQQ biosynthesis protein E [Burkholderia ambifaria MC40-6] Length = 374 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 9/91 (9%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 LW E R C FC + + T G + D +I + G + Sbjct: 13 PLWLLAELTYRCPLHCAFC---YNPVDFATHGTELDTDAWRTVISDARALGAAQ---IGF 66 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL + D+ L+Q GF + T+G Sbjct: 67 SGGEPLQRDDLEVLVQHARSLGFYTNLITSG 97 >gi|16950513|dbj|BAB72009.1| quinohemoprotein amine dehydrogenase unknown subunit. [Pseudomonas putida] Length = 476 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 41/135 (30%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GCNL C +C D D + + G + + +E E R Sbjct: 110 TGCNL-----------SCTYCYKEDLD----KPSAGKKMSTATAEASVEMLLKESPDEQR 154 Query: 87 Y-CVLTGGEPLLQVDVPLIQ--------ALNKRGFEIA--VETNGTIEPPQGIDW----- 130 Y V GGEPL + PLI+ + G ++ + TN T+ + +DW Sbjct: 155 YSVVFFGGEPL--SNRPLIEHMVAYCERRFAEAGKQVEFIMTTNATLLTEEIVDWLNAHR 212 Query: 131 --ICVS---PKAGCD 140 + VS PK D Sbjct: 213 FGLSVSIDGPKTVHD 227 >gi|330815962|ref|YP_004359667.1| Molybdenum cofactor biosynthesis protein A [Burkholderia gladioli BSR3] gi|327368355|gb|AEA59711.1| Molybdenum cofactor biosynthesis protein A [Burkholderia gladioli BSR3] Length = 370 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 25/114 (21%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + ++++L G ++ R +TGGE Sbjct: 45 DRCNFRCVYCMPREVFDKDYPFLPHS--ALLSLEELERTARIFVAHGVEKIR---ITGGE 99 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 PLL+ ++ LI+ L + R ++ + TNG++ G+ + VS Sbjct: 100 PLLRKNLEFLIERLARMETVDGRPLDLTLTTNGSLLARKARSLRDAGLTRVTVS 153 >gi|304397064|ref|ZP_07378943.1| pyruvate formate-lyase activating enzyme [Pantoea sp. aB] gi|304355213|gb|EFM19581.1| pyruvate formate-lyase activating enzyme [Pantoea sp. aB] Length = 246 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 50/153 (32%), Gaps = 28/153 (18%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G +V+ L + G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEISVEALMADVLSYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKAGCDL 141 +GGE +LQ + +A G ++TNG ID + V+ DL Sbjct: 72 GGVTASGGEAILQAEFVRDWFRACKAEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDL 131 Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174 K Q+ V N+ DF R LQ Sbjct: 132 KQMNDD-----VHQILVGVSNHRTLDFAR-YLQ 158 >gi|300722527|ref|YP_003711817.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus nematophila ATCC 19061] gi|297629034|emb|CBJ89619.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus nematophila ATCC 19061] Length = 246 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 57/184 (30%), Gaps = 44/184 (23%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G V++L Sbjct: 25 VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKTVTVEELVKEATTYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134 G +GGE +LQ + +A + G ++TNG + + +D Sbjct: 68 NASGGGVTASGGEAILQAEFVRDWFRACHAEGINTCLDTNGFVRRYDSIIDELLD----- 122 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 DL + ++L Q V N+ +F + + N I Y Sbjct: 123 ---NTDLVMLDLKQLNDDIHQKLVGVSNHRTLEFAHY--------LAKRNQRTWIRYVVV 171 Query: 195 NPKW 198 P W Sbjct: 172 -PDW 174 >gi|292670087|ref|ZP_06603513.1| nitrite reductase heme biosynthesis J protein [Selenomonas noxia ATCC 43541] gi|292648275|gb|EFF66247.1| nitrite reductase heme biosynthesis J protein [Selenomonas noxia ATCC 43541] Length = 396 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +CR C ++ G K G ++ I+ E + Sbjct: 47 CNL-----------RCRHC---YMCSDGQKYDGELTTEEAKRFID---GLAEFRVPVLLF 89 Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +GGEPL++ D L + RG + TNGT+ Sbjct: 90 SGGEPLIRPDFFELAEYARDRGVRPTLSTNGTL 122 >gi|257440313|ref|ZP_05616068.1| pyruvate formate-lyase 1-activating enzyme [Faecalibacterium prausnitzii A2-165] gi|257197347|gb|EEU95631.1| pyruvate formate-lyase 1-activating enzyme [Faecalibacterium prausnitzii A2-165] Length = 251 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 28/119 (23%) Query: 8 EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66 E F ++ G G VF GC + +C++C G ++ Sbjct: 14 ESFGSVDGPGVRFV----VF--LQGC-----------ALRCKYCHNPETWS-AEGGTEWS 55 Query: 67 VDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETNG 120 ++L + W G+ ++GGEPL Q+D LI+ +G A++T G Sbjct: 56 PEKLFQHV---WRYRNYWGKKGGITVSGGEPLRQMDF-LIKFFQLARAKGVHTALDTAG 110 >gi|322420719|ref|YP_004199942.1| Radical SAM domain-containing protein [Geobacter sp. M18] gi|320127106|gb|ADW14666.1| Radical SAM domain protein [Geobacter sp. M18] Length = 366 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 7/79 (8%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104 +C C + L L+ E G + R LTGGEPL + L+ Sbjct: 32 RCAHC--WKSAGNSEHPREVPLQSLLGLLREFRALGGEGVR---LTGGEPLRHPQWLELV 86 Query: 105 QALNKRGFE-IAVETNGTI 122 + GFE +A++TNG + Sbjct: 87 RFAAAEGFETVALQTNGVL 105 >gi|253574226|ref|ZP_04851568.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp. oral taxon 786 str. D14] gi|251846703|gb|EES74709.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp. oral taxon 786 str. D14] Length = 335 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 6/83 (7%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + + +++A+ + G ++ R LTGGEPL++ D Sbjct: 21 DRCNLRCVYCMPAEGMVFQPHEEIMSYEEIAETVSALTPMGLRKIR---LTGGEPLVRKD 77 Query: 101 VP-LIQALNK-RGFE-IAVETNG 120 + L+ L+ G E IA+ TNG Sbjct: 78 LEQLVAMLSSIPGIEDIALTTNG 100 >gi|238619479|ref|YP_002914304.1| Radical SAM domain protein [Sulfolobus islandicus M.16.4] gi|238380548|gb|ACR41636.1| Radical SAM domain protein [Sulfolobus islandicus M.16.4] Length = 378 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 7/91 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + + + + +C C ++ ++ LI+E E +++G Sbjct: 36 PVVTWNLTRKCNLKCLHC---YINASPEGEDGPTTEEALRLIDEM---AEMRIPLIIMSG 89 Query: 93 GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GEPL++ D L +G ++A+ TNGT+ Sbjct: 90 GEPLMRRDFFELASYARIKGIKLALSTNGTL 120 >gi|297200853|ref|ZP_06918250.1| radical SAM domain-containing protein [Streptomyces sviceus ATCC 29083] gi|197712426|gb|EDY56460.1| radical SAM domain-containing protein [Streptomyces sviceus ATCC 29083] Length = 792 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 30/99 (30%), Gaps = 18/99 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 C+L A + D V ++ A I E T + + VL Sbjct: 8 CDLACDHCYVYEHADQSWRDRPAVVSDEV------LELTAKRIAEHARTHRLDTVHVVLH 61 Query: 92 GGEPLL----------QVDVPLIQALNKRGFEIAVETNG 120 GGEPLL Q + L I TNG Sbjct: 62 GGEPLLAGRDKLRLAAQNLSTALSGLCALDLRIH--TNG 98 >gi|197286357|ref|YP_002152229.1| radical SAM superfamily protein [Proteus mirabilis HI4320] gi|194683844|emb|CAR44964.1| radical SAM superfamily protein [Proteus mirabilis HI4320] Length = 288 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 43/143 (30%), Gaps = 47/143 (32%) Query: 22 RVAVFCRFSGCNLWSGREQD------------------------------RLSAQCRFCD 51 R+A+F GCNL + S +C CD Sbjct: 23 RLAIF--LQGCNLRCKNCHNPYTMGICDNCGDCIATCPQQALSLQNGVVNWNSHRCEQCD 80 Query: 52 T--DFVGIQGTKGG-RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 T Q + Y VD+L + + ++GGE LQ+ LI Sbjct: 81 TCIQQCPRQSSPMTLTYTVDELIAITRKYAAFING----VTVSGGESTLQLPF-LIDYFK 135 Query: 109 K-------RGFEIAVETNGTIEP 124 R +++NGT+ Sbjct: 136 AIKAAPDLRHLTCLIDSNGTLSL 158 >gi|302541338|ref|ZP_07293680.1| hopanoid biosynthesis associated radical SAM protein HpnH [Streptomyces hygroscopicus ATCC 53653] gi|302458956|gb|EFL22049.1| hopanoid biosynthesis associated radical SAM protein HpnH [Streptomyces himastatinicus ATCC 53653] Length = 338 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 39 CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 80 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + +++ L +R + + TN + + +D SP + I G +E Sbjct: 81 GGEPLMHPQIDEIVRQLVQRKKYVFLCTN-AMLLRKKMDNFTPSPYFAFAVHIDGLRE 137 >gi|229584544|ref|YP_002843045.1| Radical SAM domain protein [Sulfolobus islandicus M.16.27] gi|228019593|gb|ACP55000.1| Radical SAM domain protein [Sulfolobus islandicus M.16.27] Length = 378 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 7/91 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + + + + +C C ++ ++ LI+E E +++G Sbjct: 36 PVVTWNLTRKCNLKCLHC---YINASPEGEDGPTTEEALRLIDEM---AEMRIPLIIMSG 89 Query: 93 GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GEPL++ D L +G ++A+ TNGT+ Sbjct: 90 GEPLMRRDFFELASYARIKGIKLALSTNGTL 120 >gi|317182080|dbj|BAJ59864.1| molybdenum cofactor biosynthesis protein MoaA [Helicobacter pylori F57] Length = 330 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 10/80 (12%) Query: 46 QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102 +C++C T +D + + ++ G K+ R +TGGEPLL+ Sbjct: 24 RCQYCMPTTPLNFFDDE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDE 78 Query: 103 LIQALNKRGFEIA--VETNG 120 I L+ E+A + TNG Sbjct: 79 FIAKLHAYNKEVALVLSTNG 98 >gi|190894331|ref|YP_001984625.1| putative biosynthetic heme protein [Rhizobium etli CIAT 652] gi|190699992|gb|ACE94075.1| putative biosynthetic heme protein [Rhizobium etli CIAT 652] gi|327192750|gb|EGE59684.1| putative biosynthetic heme protein [Rhizobium etli CNPAF512] Length = 422 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 17/118 (14%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C VG + KG +N++ + LIE+ G R ++ Sbjct: 49 CNL-----------GCHHCYIAGVGPKA-KGIDFNLEAIQGLIEQALPNGL---RKVKVS 93 Query: 92 GGEPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147 GGEP++ + + +++ L G E+ ETNGT+ I+ + P + + Sbjct: 94 GGEPMVHKEFMAVMEYLASCGLKELVFETNGTLFDEFTIEQLSRLPNLTVFISLDHFD 151 >gi|170726599|ref|YP_001760625.1| pyrroloquinoline quinone biosynthesis protein PqqE [Shewanella woodyi ATCC 51908] gi|169811946|gb|ACA86530.1| coenzyme PQQ biosynthesis protein E [Shewanella woodyi ATCC 51908] Length = 371 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 21/143 (14%) Query: 33 NLWSGREQDRL-SAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E C +C TD G + + D++ + G + + Sbjct: 10 PLWLLAELTYECPLHCAYCSNPTDL----GKREDELTTEAWLDVLSQARELGSVQLGF-- 63 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 +GGEPLL+ D+ L++ K GF + T+G I ++ K LK+ G Sbjct: 64 -SGGEPLLRKDLEILVEHGRKLGFYTNLITSG----------IGLTEKRIKQLKLAGLDH 112 Query: 149 LKLVFPQVNVSPENYIGFDFERF 171 +++ F + + I + F Sbjct: 113 IQISFQAADPQLNDAIAGRGKAF 135 >gi|325662619|ref|ZP_08151219.1| molybdenum cofactor biosynthesis protein A [Lachnospiraceae bacterium 4_1_37FAA] gi|325471116|gb|EGC74342.1| molybdenum cofactor biosynthesis protein A [Lachnospiraceae bacterium 4_1_37FAA] Length = 332 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 19/130 (14%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +CR+C G K + L ++ E WI E +TGGEPL++ Sbjct: 18 DRCNLRCRYC-----MPDGIKSIPMEQILTLEEIAEVCWIASELGITKFKVTGGEPLVRK 72 Query: 100 D-VPLIQALNKRGF--EIAVETNGTIEP-------PQGIDWICVSPKAGCDLK---IKGG 146 + LI+ L + ++ + TNG + GID I VS C K I G Sbjct: 73 GCMELIRMLKALPYTEQVTLTTNGILLAAYAKELKEVGIDGINVSLDTLCAEKFAEITGY 132 Query: 147 QELKLVFPQV 156 LK V + Sbjct: 133 DRLKDVLEGI 142 >gi|317012578|gb|ADU83186.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori Lithuania75] Length = 321 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 29/173 (16%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLLQV-DV 101 +C++C + T ++ ++L +++E I ++ + +TGGEPLL+ Sbjct: 24 RCQYC------MPATPLNFFDDEELLPLDNVLEFLKIAIDEGVKKIRITGGEPLLRKGLD 77 Query: 102 PLIQALNKRGFEIA--VETNGTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQEL 149 I L+ E+A + TNG + D + V S K+ LKI L Sbjct: 78 EFIAKLHAYNNEVALVLSTNGFLLKKMAKDLKNAGLSRVNVSLDSLKSDRVLKISQKDAL 137 Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202 K + S + + M +E L + Y R+ + Sbjct: 138 KNTLEGIEESLKVGLKLKLNTVV---MKSVNDDEILEL-LEYAKNR---RIQI 183 >gi|258512763|ref|YP_003186197.1| molybdenum cofactor biosynthesis protein A [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479489|gb|ACV59808.1| molybdenum cofactor biosynthesis protein A [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 341 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 18/109 (16%) Query: 41 DRLSAQCRFC-DTDFVGIQGT---KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 DR + +C +C +D G + D++A L+ G ++ R LTGGEPL Sbjct: 25 DRCNFRCPYCMPSDVFGPDYPFLRPDALMSPDEIAKLVRALVPLGLEKVR---LTGGEPL 81 Query: 97 LQVD-VPLIQALNKRG--FEIAVETNGTIEPPQ--------GIDWICVS 134 L+ + V +++ + EIA+ TNG++ + G+ I VS Sbjct: 82 LRREVVEIVEKVAAVPGLHEIAMTTNGSLLTREKAMALKKAGLTRITVS 130 >gi|182417703|ref|ZP_02949022.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum 5521] gi|237669148|ref|ZP_04529132.1| glycyl-radical enzyme activating family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378427|gb|EDT75958.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum 5521] gi|237657496|gb|EEP55052.1| glycyl-radical enzyme activating family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 310 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 24/124 (19%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 G V + ++++ + L+GGEPL+Q + + L++A G+ +ET Sbjct: 110 GKEMTVYDVIKELKKEDVIFRCSKGGVTLSGGEPLMQPEFSIELLKACKSLGWHTTMETT 169 Query: 120 G----------------------TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157 G TI+ + VS K + K + V +V Sbjct: 170 GYADESVIEDVMPWVDLLLMDFKTIDESMHFKYTGVSNKIILENAKKIVNLVPEVIARVP 229 Query: 158 VSPE 161 V PE Sbjct: 230 VIPE 233 >gi|305664203|ref|YP_003860491.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230] gi|304378772|gb|ADM28611.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230] Length = 486 Score = 44.2 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 18/90 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C + ++ + L++E G L+ Sbjct: 136 CNL-----------RCLHC---YQRADRPLPDELSLSEKLSLVDELDKIGVAA---VALS 178 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 GGEP + D +++AL+ RG +A TNG Sbjct: 179 GGEPTIHPDYFTIVKALSSRGIYVATATNG 208 >gi|21492976|ref|NP_660051.1| putative biosynthetic heme protein [Rhizobium etli CFN 42] gi|21467389|gb|AAM55052.1| putative biosynthetic heme protein [Rhizobium etli CFN 42] Length = 422 Score = 44.2 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 17/118 (14%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C VG + KG +N++ + LIE+ G R ++ Sbjct: 49 CNL-----------GCHHCYIAGVGPKA-KGIDFNLEAIQGLIEQALPNGL---RKVKVS 93 Query: 92 GGEPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147 GGEP++ + + +++ L G E+ ETNGT+ I+ + P + + Sbjct: 94 GGEPMVHKEFMAVMEYLASCGLKELVFETNGTLFDEFTIEQLSRLPNLTVFISLDHFD 151 >gi|320161123|ref|YP_004174347.1| oxidoreductase [Anaerolinea thermophila UNI-1] gi|319994976|dbj|BAJ63747.1| oxidoreductase [Anaerolinea thermophila UNI-1] Length = 395 Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 26/116 (22%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 +GCNL C C + + + ++ ++E I E + Sbjct: 56 TTGCNL-----------HCVTC---IRNVWEDEEAQMSMQTFERILE--GIDHLPELKRV 99 Query: 89 VLTG-GEPLLQVDV-PLIQALNKRGFEIAVETNGTI--------EPPQGIDWICVS 134 V TG GEPL ++ +I+ + +RG + V TNG + G+D + VS Sbjct: 100 VFTGFGEPLTHKNIFDMIEEIRRRGIAVTVGTNGLLLNEDKARMLVEAGVDRLVVS 155 >gi|310642696|ref|YP_003947454.1| pyruvate formate-lyase 1-activating enzyme [Paenibacillus polymyxa SC2] gi|309247646|gb|ADO57213.1| Pyruvate formate-lyase 1-activating enzyme [Paenibacillus polymyxa SC2] Length = 252 Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 34/123 (27%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F T+ G G RF GC +C++C DT Sbjct: 10 ETFGTVDGPG---------IRFVLFMQGC-----------LLKCQYCHNPDT----WALN 45 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKR-GFEIAVE 117 +G ++++ IE G ++GGEP LQ L + + +R ++ Sbjct: 46 EGNPMTLEEVLAEIEPYLAYYRSSGGGLTVSGGEPTLQAHFVAELFKEVKRRWNLHTTLD 105 Query: 118 TNG 120 +NG Sbjct: 106 SNG 108 >gi|304313308|ref|YP_003812906.1| Heme D1 biosynthesis protein [gamma proteobacterium HdN1] gi|301799041|emb|CBL47284.1| Heme D1 biosynthesis protein [gamma proteobacterium HdN1] Length = 390 Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 17/102 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + D DF + +++ ++++ + +L+ Sbjct: 36 CNLTCKHCYSISA------DIDF-------PDELSKEEVFTVMDDLK---QFRVPALILS 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132 GGEPL++ D+ + + K GF + + +NGT+ Q ID I Sbjct: 80 GGEPLMRPDIFEIAERAKKMGFYVGLSSNGTLITEQNIDQIV 121 >gi|289523484|ref|ZP_06440338.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503176|gb|EFD24340.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 225 Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 29/106 (27%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL----IEEQWIT 80 +F +GCN +C FC G +Q+ L + E + Sbjct: 26 IF--LTGCNF-----------RCPFC----------HNGLLVNEQVPALNDIKVLEHIKS 62 Query: 81 GEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124 V++GGEP L + ++ L + G + ++TNG+ Sbjct: 63 RRSFLDGVVISGGEPTLDIKRLEKILFQLKEVGLPVKLDTNGSNPL 108 >gi|302877843|ref|YP_003846407.1| pyruvate formate-lyase activating enzyme [Gallionella capsiferriformans ES-2] gi|302580632|gb|ADL54643.1| pyruvate formate-lyase activating enzyme [Gallionella capsiferriformans ES-2] Length = 262 Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 24/113 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF SGC +C +C DT ++ G VD++ +++ Sbjct: 44 VFV--SGC-----------QFRCLYCHNPDT----VKLHNGKLMQVDEVLSKLKKYARFL 86 Query: 82 EKEGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 G ++GGEPL+Q +A ++ ++T G + DW Sbjct: 87 RATGGL-TISGGEPLMQAHYIGEIFYRAKHELHLHTTLDTQGFLGAHLQDDWF 138 >gi|218281042|ref|ZP_03487618.1| hypothetical protein EUBIFOR_00177 [Eubacterium biforme DSM 3989] gi|218217691|gb|EEC91229.1| hypothetical protein EUBIFOR_00177 [Eubacterium biforme DSM 3989] Length = 380 Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 62/153 (40%), Gaps = 25/153 (16%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCNL +C +C + + +++++ ++ K+ Sbjct: 172 TGGCNL-----------KCPYCHSKDLVYLKENMYPIANEKISEYLKSH----HKDLEGI 216 Query: 89 VLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT-------IEPPQGIDWICVSPK--AG 138 ++GGEPL+ + +Q K ++I + TNG I +D++ + K Sbjct: 217 YISGGEPLMHEGILSFLQYAKKLDYKIKLHTNGMFYDRLKRILEDGLVDYVSLDIKNAPS 276 Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171 KI G +++ L+ + +++ FD++ + Sbjct: 277 AYAKICGVEDVDLMDIEKSLNELKASSFDYDVY 309 >gi|153003796|ref|YP_001378121.1| radical SAM domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152027369|gb|ABS25137.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5] Length = 355 Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 11/113 (9%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + + G R +++E G T Sbjct: 36 CNLACAMCECGAARA--------ASGPGRPPRRMEAALALRVLDE--RLGSPLREVIPST 85 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143 GEPLL + L++ +RG + + TNGT W + D+KI Sbjct: 86 MGEPLLWTGLGALVERCAERGLALNLTTNGTFPGRGAAAWAALLVPVASDVKI 138 >gi|163781559|ref|ZP_02176559.1| molybdenum cofactor biosynthesis protein A [Hydrogenivirga sp. 128-5-R1-1] gi|159882779|gb|EDP76283.1| molybdenum cofactor biosynthesis protein A [Hydrogenivirga sp. 128-5-R1-1] Length = 332 Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 18/107 (16%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR + +C FC D + +Q + + +++A L+ G ++ R +TGGEPL+ Sbjct: 19 DRCNFRCFFCMPPDKEIEFLQ--RSELLSYEEIARLVGVLVSLGVRKAR---ITGGEPLM 73 Query: 98 QVDVP-LIQALNK-RGFE-IAVETNG-TIE------PPQGIDWICVS 134 + + L++ L G IA+ TNG T++ G+ + VS Sbjct: 74 RAHLENLVEKLASIEGLRDIALTTNGYTLDRKLDSLVSAGLKRVTVS 120 >gi|126465145|ref|YP_001040254.1| radical SAM domain-containing protein [Staphylothermus marinus F1] gi|126013968|gb|ABN69346.1| Radical SAM domain protein [Staphylothermus marinus F1] Length = 259 Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 15/92 (16%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL +C+FC + KG Q+ + + I +++ +Y L Sbjct: 48 GCNL-----------RCKFCWSWRYSFYTNKGFFQTPQQVYEKLTR--IAEKRKYKYIRL 94 Query: 91 TGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120 +GGEP ++ + L++ L++ F +ETNG Sbjct: 95 SGGEPTITMKHVIQLLELLDQTKFVFILETNG 126 >gi|59891639|gb|AAX10036.1| putative Fe-S oxidoreductase [Pseudomonas fluorescens] Length = 425 Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C +G +Q + E G + + + Sbjct: 59 PLWLLAELTYRCPLQCPYCSNPLDF--AEQGKELTTEQWIKVFREAREMGAAQLGF---S 113 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI K GF + T+G Sbjct: 114 GGEPLVRQDLAELIAEARKLGFYTNLITSG 143 >gi|149276408|ref|ZP_01882552.1| putative radical-activating enzyme [Pedobacter sp. BAL39] gi|149232928|gb|EDM38303.1| putative radical-activating enzyme [Pedobacter sp. BAL39] Length = 194 Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 20/112 (17%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104 +C +C + GR + + + + + + VL+GGE + D+ PL+ Sbjct: 2 RCIYC---YNPDIVLGKGRLSAPDVITFLHSRRLLLDG----VVLSGGECTMHKDIIPLV 54 Query: 105 QALNKRGFEIAVETNGTIE-------PPQGIDWICVSPKAGCDLKIKGGQEL 149 + + GF + ++TNG++ Q ID I + KA + G E+ Sbjct: 55 AEIKRMGFSVKLDTNGSMPGVLKKLLDAQLIDAIALDFKA-----LPGNYEM 101 >gi|92116484|ref|YP_576213.1| pyruvate formate-lyase activating [Nitrobacter hamburgensis X14] gi|91799378|gb|ABE61753.1| Pyruvate formate-lyase activating [Nitrobacter hamburgensis X14] Length = 275 Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 27/108 (25%) Query: 21 GRVAV-FCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEE 76 G V F SGC +C +C DT + + + +L+D + Sbjct: 52 GLRVVLFV--SGC-----------LLRCTYCHNPDTWHLKDGTYVSADHVLRRLSDFVPA 98 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG 120 G ++GGEP++Q + + + G A++T+G Sbjct: 99 LLPLGGG----LTISGGEPMVQ--LAFTRRIFAGAKALGLHTAIQTSG 140 >gi|308068378|ref|YP_003869983.1| Predicted Fe-S oxidoreductase [Paenibacillus polymyxa E681] gi|305857657|gb|ADM69445.1| Predicted Fe-S oxidoreductase [Paenibacillus polymyxa E681] Length = 292 Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 22/98 (22%) Query: 32 CNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C FC T V + + +++++ + + Sbjct: 16 CNL-----------ACSFCPQTQRV------KKFIDPEVFRNVLDQVKPHTDYIYLHVK- 57 Query: 91 TGGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQG 127 GEPLL + L+ ++ +++G ++ + TNGT+ P G Sbjct: 58 --GEPLLHPKIDLLLESAHEKGLKVNITTNGTLLPKTG 93 >gi|242239673|ref|YP_002987854.1| pyruvate formate lyase-activating enzyme 1 [Dickeya dadantii Ech703] gi|242131730|gb|ACS86032.1| pyruvate formate-lyase activating enzyme [Dickeya dadantii Ech703] Length = 246 Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 58/179 (32%), Gaps = 40/179 (22%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V++L + G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGREITVEELMKEVVTYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI----EPPQGIDWICVSPKAGC 139 +GGE +LQ + +A +++G ++TNG + + + Sbjct: 72 GGVTASGGEAILQAEFVRDWFRACHEQGINTCLDTNGFVRRYDPVIDELLDVT------- 124 Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198 DL + ++L Q V N+ +F R+ N + I Y P W Sbjct: 125 DLVMLDLKQLNDDIHQNLVGVSNHRTLEFARY--------LATRNQRVWIRYVVV-PGW 174 >gi|227829519|ref|YP_002831298.1| radical SAM protein [Sulfolobus islandicus L.S.2.15] gi|229578825|ref|YP_002837223.1| Radical SAM domain protein [Sulfolobus islandicus Y.G.57.14] gi|229582435|ref|YP_002840834.1| Radical SAM domain protein [Sulfolobus islandicus Y.N.15.51] gi|284997435|ref|YP_003419202.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5] gi|227455966|gb|ACP34653.1| Radical SAM domain protein [Sulfolobus islandicus L.S.2.15] gi|228009539|gb|ACP45301.1| Radical SAM domain protein [Sulfolobus islandicus Y.G.57.14] gi|228013151|gb|ACP48912.1| Radical SAM domain protein [Sulfolobus islandicus Y.N.15.51] gi|284445330|gb|ADB86832.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5] Length = 378 Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 7/91 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + + + + +C C ++ ++ LI+E E +++G Sbjct: 36 PVVTWNLTRKCNLKCLHC---YINASPEGEDGSTTEEALRLIDEM---AEMRIPLIIMSG 89 Query: 93 GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GEPL++ D L +G ++A+ TNGT+ Sbjct: 90 GEPLMRRDFFELASYARIKGIKLALSTNGTL 120 >gi|15898450|ref|NP_343055.1| coenzyme PQQ synthesis protein E (pqqE-3) [Sulfolobus solfataricus P2] gi|13814875|gb|AAK41845.1| Coenzyme PQQ synthesis protein E (pqqE-3) [Sulfolobus solfataricus P2] Length = 378 Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 7/91 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + + + + +C C ++ ++ LI+E E +++G Sbjct: 36 PVVTWNLTRKCNLKCLHC---YINASPEGEDGSTTEEALRLIDEM---AEMRIPLIIMSG 89 Query: 93 GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GEPL++ D L +G ++A+ TNGT+ Sbjct: 90 GEPLMRRDFFELASYARIKGIKLALSTNGTL 120 >gi|282164510|ref|YP_003356895.1| hypothetical protein MCP_1840 [Methanocella paludicola SANAE] gi|282156824|dbj|BAI61912.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 383 Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 27/98 (27%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GC ++C +C + +VD + +++E W+ + G Sbjct: 12 GCP-----------SKCSYC-----WSSDPDSPKMSVDTIKEVVE--WLKEFRPGEAVTF 53 Query: 91 T--GGEPLL-------QVDVPLIQALNKRGFEIAVETN 119 T GGEPLL + L ++L R A++TN Sbjct: 54 TFHGGEPLLAGADFYNKSLALLSKSLKDRKIAFAMQTN 91 >gi|238026593|ref|YP_002910824.1| molybdenum cofactor biosynthesis protein A [Burkholderia glumae BGR1] gi|237875787|gb|ACR28120.1| Molybdenum cofactor biosynthesis protein A [Burkholderia glumae BGR1] Length = 370 Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 25/114 (21%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + ++++L + + ++ E +TGGE Sbjct: 45 DRCNFRCVYCMPRDVFDKDYPFLPHS--ALLSLEEL-ERVARLFVAHGVEK--IRITGGE 99 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 PLL+ ++ LI+ L + ++ + TNG++ G+ + VS Sbjct: 100 PLLRKNLEFLIERLARMQTVGGHPLDLTLTTNGSLLARKARSLRDAGLTRVTVS 153 >gi|55821616|ref|YP_140058.1| pyruvate-formate lyase activating enzyme [Streptococcus thermophilus LMG 18311] gi|55823544|ref|YP_141985.1| pyruvate-formate lyase activating enzyme [Streptococcus thermophilus CNRZ1066] gi|116628329|ref|YP_820948.1| pyruvate-formate lyase activating enzyme [Streptococcus thermophilus LMD-9] gi|55737601|gb|AAV61243.1| pyruvate-formate lyase activating enzyme [Streptococcus thermophilus LMG 18311] gi|55739529|gb|AAV63170.1| pyruvate-formate lyase activating enzyme [Streptococcus thermophilus CNRZ1066] gi|116101606|gb|ABJ66752.1| Pyruvate-formate lyase-activating enzyme [Streptococcus thermophilus LMD-9] gi|312278954|gb|ADQ63611.1| Pyruvate formate-lyase 1-activating enzyme [Streptococcus thermophilus ND03] Length = 266 Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 67/181 (37%), Gaps = 42/181 (23%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC L +C++C DT Sbjct: 16 TESFGSVDGPG---------IRFIVFMQGCKL-----------RCQYCHNPDT-----WA 50 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIA 115 K + + D++EE G + ++GGE +LQ+D L K G Sbjct: 51 MKSNKAVERTVEDVLEEALRFRHFWGEHGGITVSGGEAMLQIDFVTALFTEAKKLGIHCT 110 Query: 116 VETNG-----TIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169 ++T G T E + +D + V+ D+K ++ K V Q N + + + + Sbjct: 111 LDTCGLSYRNTPEYHEVVDKLLAVTDLVLLDIKEIDPEQHKFVTRQPNKNILEFAQYLSD 170 Query: 170 R 170 + Sbjct: 171 K 171 >gi|218460677|ref|ZP_03500768.1| putative biosynthetic heme protein [Rhizobium etli Kim 5] Length = 341 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 17/118 (14%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C VG + KG +N++ + LIE+ G R ++ Sbjct: 49 CNL-----------GCHHCYIAGVGPKA-KGIDFNLEAIQGLIEQALPNGL---RKVKVS 93 Query: 92 GGEPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147 GGEP++ + + +++ L G E+ ETNGT+ I+ + P + + Sbjct: 94 GGEPMVHKEFMAVMEYLASCGLKELVFETNGTLFDEFTIEQLSRLPNLTVFISLDHFD 151 >gi|51246878|ref|YP_066762.1| pyruvate formate-lyase activating enzyme [Desulfotalea psychrophila LSv54] gi|50877915|emb|CAG37755.1| related to pyruvate formate-lyase activating enzyme [Desulfotalea psychrophila LSv54] Length = 340 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI--AVETN 119 G V ++ D +EE I + G L+GGEP Q + L R I AVET Sbjct: 142 GEEMTVKKVVDRVEEDAIFYARSGGGMTLSGGEPFAQAEFALALLREARHRRIKTAVETC 201 Query: 120 GT 121 G Sbjct: 202 GA 203 >gi|300857746|ref|YP_003782729.1| hypothetical protein cpfrc_00329 [Corynebacterium pseudotuberculosis FRC41] gi|300685200|gb|ADK28122.1| hypothetical protein cpfrc_00329 [Corynebacterium pseudotuberculosis FRC41] Length = 236 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 29/126 (23%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 A F GC L +C +C +Q G +++ + L+ + Sbjct: 44 VAAAF--TQGCPL-----------RCVYC--HNSQLQAFTPGAHSLAEFLSLLSSRHGLI 88 Query: 82 EKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG---------TIEPPQGIDWI 131 + V++GGEP + I A++ GF + + T G +P DW+ Sbjct: 89 DAA----VISGGEPTAVRGLGDAIAAIHNIGFPVGIHTCGYAPSRIAELLRDPATTPDWV 144 Query: 132 CVSPKA 137 + KA Sbjct: 145 GLDIKA 150 >gi|227872087|ref|ZP_03990461.1| [formate-C-acetyltransferase]-activating enzyme [Oribacterium sinus F0268] gi|227842068|gb|EEJ52324.1| [formate-C-acetyltransferase]-activating enzyme [Oribacterium sinus F0268] Length = 261 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 28/119 (23%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G VF GC + +C +C DT K Sbjct: 29 MESFGSVDGPGTRFI----VF--LQGC-----------AMRCLYCHNPDT----WAFKKE 67 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 +++ KEG ++GG+PLL +D + L + K+G ++T+ Sbjct: 68 NLMTPEEVLKKAMRYQDYWGKEGG-ITVSGGDPLLHIDFLLALFRLAKKKGINTCLDTS 125 >gi|150014681|gb|ABR57203.1| PeaB [Pseudomonas putida] Length = 476 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 31/116 (26%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GCNL C +C D D + + G + + +E E R Sbjct: 110 TGCNL-----------SCTYCYKEDLD----KPSAGKKMSTATAEASVEMLLKESPDEER 154 Query: 87 Y-CVLTGGEPLLQVDVPLIQ--------ALNKRGFEIA--VETNGTIEPPQGIDWI 131 Y V GGEPL + PLI+ + G ++ + TN T+ + +DW+ Sbjct: 155 YSVVFFGGEPL--SNRPLIEHMVAYCERRFAEAGKQVEFIMTTNATLLTEEIVDWL 208 >gi|167630037|ref|YP_001680536.1| elongator protein 3/miab/nifb, putative [Heliobacterium modesticaldum Ice1] gi|167592777|gb|ABZ84525.1| elongator protein 3/miab/nifb, putative [Heliobacterium modesticaldum Ice1] Length = 393 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 17/96 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C + D+D + G + + + DL + +L+ Sbjct: 47 CNLHC--------IHC-YSDSDEIEYPGELTTKEAIRFIDDL-------ADFNVPVLLLS 90 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 GGEPL++ D+ L+ KR + TNGT+ P Sbjct: 91 GGEPLMRPDIFDLVAHATKRNIRVTFSTNGTLITPD 126 >gi|260583914|ref|ZP_05851662.1| pyruvate formate-lyase 1-activating enzyme [Granulicatella elegans ATCC 700633] gi|260158540|gb|EEW93608.1| pyruvate formate-lyase 1-activating enzyme [Granulicatella elegans ATCC 700633] Length = 253 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 47/131 (35%), Gaps = 37/131 (28%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +C FC DT +G Sbjct: 12 TESFGSVDGPG---------VRFVTFMQGC-----------RMRCEFCHNPDTWNIG--- 48 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117 G + +L + K+G ++GGEPLLQVD + + G ++ Sbjct: 49 -GGKKITSQELLEEALRYRAFWGKKGG-VTVSGGEPLLQVDFLIDFFKRCKAMGIHTTLD 106 Query: 118 TNG---TIEPP 125 + G T + P Sbjct: 107 SCGMPFTYDEP 117 >gi|224538042|ref|ZP_03678581.1| hypothetical protein BACCELL_02931 [Bacteroides cellulosilyticus DSM 14838] gi|224520332|gb|EEF89437.1| hypothetical protein BACCELL_02931 [Bacteroides cellulosilyticus DSM 14838] Length = 203 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 38/112 (33%), Gaps = 25/112 (22%) Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72 + GEG F GC L C++C Y+ +QL + Sbjct: 17 IDGEGVTTLVA-----FHGCPL-----------HCKYCLNPQSLSDDFDFPLYSCEQLYE 60 Query: 73 L--IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA---LNKRGFEIAVETN 119 ++E + + G GGEP L I L + + I VET+ Sbjct: 61 RVKVDELYFLATRGG--ITFGGGEPCL--RSEFISRFRELCGKEWRITVETS 108 >gi|86739540|ref|YP_479940.1| radical SAM family protein [Frankia sp. CcI3] gi|86566402|gb|ABD10211.1| Radical SAM [Frankia sp. CcI3] Length = 334 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 40/118 (33%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C R +VD +EE + Sbjct: 38 CNL-----------SCTGCG-KIQHPASVLKQRMSVDDALAAVEECG------APVVAIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + ++ L KR + + TNG + + + SP L I G +E Sbjct: 80 GGEPLMHPQIHEIVNQLVKRKKFVILCTNG-LLLQKKLKNFTPSPYFTFVLHIDGLRE 136 >gi|322434186|ref|YP_004216398.1| molybdenum cofactor biosynthesis protein A [Acidobacterium sp. MP5ACTX9] gi|321161913|gb|ADW67618.1| molybdenum cofactor biosynthesis protein A [Acidobacterium sp. MP5ACTX9] Length = 355 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 20/108 (18%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99 DR + +C +C T G +G ++ + D + + LTGGEPLL+ Sbjct: 39 DRCNYRCVYCRT------GNEGAMFDELPIEDYLRIIRVFVSLGIEKVRLTGGEPLLRAG 92 Query: 100 DVPLIQALN------KRGFEIAVETNGTIEP-------PQGIDWICVS 134 + LIQ L+ +IA+ TNG + G+ I VS Sbjct: 93 LLDLIQELSGERTLGGERLDIALTTNGHLLAGLAQPLKDAGLSRITVS 140 >gi|290968353|ref|ZP_06559894.1| pyruvate formate-lyase 1-activating enzyme [Megasphaera genomosp. type_1 str. 28L] gi|290781628|gb|EFD94215.1| pyruvate formate-lyase 1-activating enzyme [Megasphaera genomosp. type_1 str. 28L] Length = 249 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 18/100 (18%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK- 83 +F GC++ +CR+C + Y + D+++E Sbjct: 27 IF--LQGCHM-----------RCRYCHNPETWKSNEE-EEYTLRSAEDVLKEALRYRSYW 72 Query: 84 -EGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNG 120 G ++GGE LLQ+D L + ++G A++T G Sbjct: 73 KNGGGITISGGEALLQMDFVLAVFSSAKEKGIHTALDTAG 112 >gi|257053084|ref|YP_003130917.1| tRNA-modifying enzyme [Halorhabdus utahensis DSM 12940] gi|256691847|gb|ACV12184.1| Wyosine base formation domain protein [Halorhabdus utahensis DSM 12940] Length = 330 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 54/185 (29%), Gaps = 32/185 (17%) Query: 38 REQDRLSAQCRFCDTDFVG--IQGTKGGRYNVDQLADL-----------------IEEQW 78 R + +C FC D G + + + + D + + Sbjct: 54 TPVVRCNERCVFCWRDHAGHTYELDDVEWDDPEAVVDASIDLQRKLLSGYGGNDDVPRER 113 Query: 79 ITGEKEGRYCVLT-GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE---PPQGIDWICV 133 E R+ ++ GEP L +P LI+A + RG + +NGT + V Sbjct: 114 FEEAMEPRHVAISLDGEPTLYPHLPELIEAFHDRGITTFLVSNGTDPEMLAECDPTQLYV 173 Query: 134 SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 S + +K V + + + D T L Y Sbjct: 174 S--VDAADRRTFDDVVKAVEDDAWDRLIDTLDVLAAK------DDTRTVLRTTLIDGYNM 225 Query: 194 QNPKW 198 P W Sbjct: 226 ARPAW 230 >gi|308069631|ref|YP_003871236.1| Pyruvate formate-lyase activating enzyme (PFL-activating enzyme) [Paenibacillus polymyxa E681] gi|305858910|gb|ADM70698.1| Pyruvate formate-lyase activating enzyme (PFL-activating enzyme) [Paenibacillus polymyxa E681] Length = 252 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 34/123 (27%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F T+ G G RF GC +C++C DT Sbjct: 10 ETFGTVDGPG---------IRFVLFMQGC-----------LLKCQYCHNPDT----WALN 45 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKR-GFEIAVE 117 +G ++++ IE G ++GGEP LQ L + + +R ++ Sbjct: 46 EGNPMTLEEVLAEIEPYLAYYRSSGGGLTVSGGEPTLQAHFVAELFKEVKRRWNLHTTLD 105 Query: 118 TNG 120 +NG Sbjct: 106 SNG 108 >gi|317154198|ref|YP_004122246.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfovibrio aespoeensis Aspo-2] gi|316944449|gb|ADU63500.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfovibrio aespoeensis Aspo-2] Length = 236 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 22/99 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD--LIEEQWITGE 82 +F GCNL +C C G + + + I+ Sbjct: 33 IF--LGGCNL-----------RCPTC------HNGQLAWDMHTLPIIEPPRIKAYLRDRA 73 Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +TGGEP + L+ + + G + ++TNG Sbjct: 74 GWLDGVTVTGGEPTTVPGLAGLLFEIRQSGLPVKLDTNG 112 >gi|152980414|ref|YP_001353667.1| molybdenum cofactor biosynthesis protein A [Janthinobacterium sp. Marseille] gi|151280491|gb|ABR88901.1| molybdenum cofactor biosynthesis protein A [Janthinobacterium sp. Marseille] Length = 370 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 25/136 (18%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + + +++ + G ++ R LTGGE Sbjct: 48 DRCNFRCVYCMPKEVFDKDYAFL--PQSSLLSFEEITRITSLFVAHGVEKIR---LTGGE 102 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ +V LI L+ R ++ + TNG++ G+ + VS A D Sbjct: 103 PLLRKNVEKLIAMLSALRTPDGRELDLTLTTNGSLLARKAQALKDAGLKRVTVSLDALDD 162 Query: 141 LKIKGGQELKLVFPQV 156 K ++ V Sbjct: 163 KVFKQMNDVDFAVSDV 178 >gi|121603640|ref|YP_980969.1| pyrroloquinoline quinone biosynthesis protein PqqE [Polaromonas naphthalenivorans CJ2] gi|120592609|gb|ABM36048.1| coenzyme PQQ biosynthesis protein E [Polaromonas naphthalenivorans CJ2] Length = 380 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 11/91 (12%) Query: 34 LWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 LW E R C FC T + +Q + Q D++ + G + + Sbjct: 19 LWLLAELTYRCPLHCVFCYNPTQYARLQ----EEMSTAQWVDVMRQARALGAAQLGF--- 71 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 +GGEP+L+ D+ L+Q GF + T+G Sbjct: 72 SGGEPMLRDDLEELVQEARHLGFYTNLITSG 102 >gi|304437666|ref|ZP_07397618.1| nitrite reductase heme biosynthesis J protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369299|gb|EFM22972.1| nitrite reductase heme biosynthesis J protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 396 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +CR C ++ G K G ++ I++ E + Sbjct: 47 CNL-----------RCRHC---YMESDGQKYDGELTTEEAKRFIDDL---AEFRVPVLLF 89 Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +GGEPL++ D L + +RG + TNGT+ Sbjct: 90 SGGEPLIRPDFFELAEHAAERGVRPTLSTNGTL 122 >gi|296241754|ref|YP_003649241.1| radical SAM domain-containing protein [Thermosphaera aggregans DSM 11486] gi|296094338|gb|ADG90289.1| Radical SAM domain protein [Thermosphaera aggregans DSM 11486] Length = 557 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 8/90 (8%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 L + +R + C +C F + + +++Q+ D++ G LTG Sbjct: 110 LVNMVITNRCNLSCWYC---FFYAEASGYVYEPSLEQIRDMVRSIKKQGVTVA--IQLTG 164 Query: 93 GEPLLQVDV-PLIQALNKRGFE-IAVETNG 120 GEPLL+ D+ +++ L G I + TNG Sbjct: 165 GEPLLRDDLIDIVKLLRDEGVRHIQLNTNG 194 >gi|85860302|ref|YP_462504.1| metallo cofactor biosynthesis protein [Syntrophus aciditrophicus SB] gi|85723393|gb|ABC78336.1| metallo cofactor biosynthesis protein [Syntrophus aciditrophicus SB] Length = 232 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 8/86 (9%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNV---DQLADLIEEQWITGEKEGRYCVLTG-GEPL 96 +R SA+C FC G G R + +++ E K+ V TG GEP Sbjct: 56 NRCSARCIFC--IRNFSDGVYGYRLRLSREPSEEEILRELEHFDLKKYGEIVFTGFGEPT 113 Query: 97 LQVDVPL--IQALNKRGFEIAVETNG 120 ++D L + L+KRG + ++TNG Sbjct: 114 CRLDTVLRITEWLHKRGIPVRLDTNG 139 >gi|307298766|ref|ZP_07578569.1| Radical SAM domain protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306915931|gb|EFN46315.1| Radical SAM domain protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 481 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 21/92 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + G+ G K + + ++++ +I + G ++T Sbjct: 121 CNL-----------NCVGC---YAGLYGRKY-QLSKEEVSSIIRQSNELGIYFF---IIT 162 Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 GGEP + + + + N F++ TNGT+ Sbjct: 163 GGEPFVWPHLLEIFEEFNDSYFQVY--TNGTL 192 >gi|195953929|ref|YP_002122219.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195933541|gb|ACG58241.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 327 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 19/106 (17%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 D+ + +C +C + D++ + + +++ D++ ++ + + +TGGEPL+ Sbjct: 21 DKCNMKCSYCRPINIDYISHK----DMLSYEEIRDIV---FVMKDFGLKKVRITGGEPLV 73 Query: 98 QVDV-PLIQALNKRGFE-IAVETNGT-------IEPPQGIDWICVS 134 + V L+ L E I++ TNGT + G+D I +S Sbjct: 74 RPQVWNLVSLLKATNLESISMTTNGTYLKEYAKLLKEAGLDTINIS 119 >gi|54309906|ref|YP_130926.1| pyruvate formate lyase-activating enzyme 1 [Photobacterium profundum SS9] gi|46914345|emb|CAG21124.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium profundum SS9] Length = 246 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 54/181 (29%), Gaps = 45/181 (24%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G +V+++ Sbjct: 21 IRFIIFMQGC-----------LMRCQYCHNRDT----WDLHDGREISVEEIMKEAVSYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWIC 132 + G +GGE +LQ + +A ++TNG T + +D Sbjct: 66 FMKASGGGVTASGGEAMLQPEFIRDFFRAAQAENIHTCLDTNGYIRKHTDVVDEVLD--- 122 Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC 192 DL + +++ Q V N DF R+ + I Y Sbjct: 123 -----ATDLVMLDLKQMDDTIHQELVGVSNKRVLDFARY--------LHKRGQKTWIRYV 169 Query: 193 F 193 Sbjct: 170 I 170 >gi|308186794|ref|YP_003930925.1| Coenzyme PQQ synthesis protein E [Pantoea vagans C9-1] gi|308057304|gb|ADO09476.1| Coenzyme PQQ synthesis protein E [Pantoea vagans C9-1] Length = 388 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF + + +Q ++ + G + + Sbjct: 19 PLWLLAELTYRCPLQCPYCSNPLDFAQQEKE----LSTEQWIEVFRQARAMGSVQLGF-- 72 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL++ D+P LI+A GF + T+G Sbjct: 73 -SGGEPLVRKDLPELIKAARDLGFYTNLITSG 103 >gi|291165209|gb|ADD81200.1| PqqE [Pantoea ananatis] gi|327393848|dbj|BAK11270.1| coenzyme PQQ synthesis protein E PqqE [Pantoea ananatis AJ13355] Length = 433 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF + + +Q D+ + G + + Sbjct: 64 PLWLLAELTYRCPLQCPYCSNPLDFAQQEKE----LSTEQWIDVFRQARAMGSVQLGF-- 117 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL + D+P LI+A GF + T+G Sbjct: 118 -SGGEPLTRKDLPDLIKAARDLGFYTNLITSG 148 >gi|134094629|ref|YP_001099704.1| molybdenum cofactor biosynthesis protein A [Herminiimonas arsenicoxydans] gi|133738532|emb|CAL61577.1| Molybdenum cofactor biosynthesis protein A [Herminiimonas arsenicoxydans] Length = 373 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 25/136 (18%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + + +++ + G ++ R LTGGE Sbjct: 48 DRCNFRCVYCMPKEVFDKDYAFLPHS--SLLSFEEITRIASLFVAHGVEKIR---LTGGE 102 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ +V LI L+ R ++ + TNG++ G+ + VS A D Sbjct: 103 PLLRKNVERLIAMLSALRTPDGRELDLTLTTNGSLLARKAQALKDAGLKRVTVSLDALDD 162 Query: 141 LKIKGGQELKLVFPQV 156 K ++ V Sbjct: 163 KIFKQMNDVDFAVSDV 178 >gi|303240613|ref|ZP_07327128.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] gi|302591850|gb|EFL61583.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] Length = 297 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 11/103 (10%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY------NVDQLADLIEEQWITGEK 83 +GC + +G C C + + G +++ I+ + I Sbjct: 64 AGCFIVNGENHYFNETNCVRC--GKCVLNCSHGALAYNLREGTPEEIFKEIKAELILLRN 121 Query: 84 EGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEP 124 G L+GGEP+LQ L++ G A+ET+G + Sbjct: 122 IGG-ITLSGGEPMLQYLEAKELLKLCKGMGAHTAIETSGAVNI 163 >gi|317128920|ref|YP_004095202.1| molybdenum cofactor biosynthesis protein A [Bacillus cellulosilyticus DSM 2522] gi|315473868|gb|ADU30471.1| molybdenum cofactor biosynthesis protein A [Bacillus cellulosilyticus DSM 2522] Length = 339 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 26/113 (23%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +CR+C D +F + K ++++A + + + +TGGE Sbjct: 22 DRCNFRCRYCMPPEIFDKNFQFL--PKNEVLTLEEMAYITK--LFVKAASIKKVRITGGE 77 Query: 95 PLLQVDVPLIQALNKRGFEI-AVE-----TNGTIEP-------PQGIDWICVS 134 PL++ +V + AL + EI A+E TNG++ P G+D + +S Sbjct: 78 PLMRQNVSHLIALIR---EIEAIEDIAMTTNGSLLPKYAKELKENGLDRVTIS 127 >gi|302537970|ref|ZP_07290312.1| radical SAM domain-containing protein [Streptomyces sp. C] gi|302446865|gb|EFL18681.1| radical SAM domain-containing protein [Streptomyces sp. C] Length = 343 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 38 CNLAC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + +++ L R + + TN + + I+ SP + I G +E Sbjct: 80 GGEPLMHPQIHEIVRQLVARRKYVFLCTN-ALLLRKKIEKFTPSPYFAFAVHIDGLRE 136 >gi|91201841|emb|CAJ74901.1| similar to nirJ/moaA/ppqE family of cofactor synthesis proteins [Candidatus Kuenenia stuttgartiensis] Length = 359 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 25/111 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C+ C + KG + LI++ + K +L+ Sbjct: 30 CNLT-----------CKHC---YAYANQIKGKELGSEDTISLIQQFKQSAVKLA---ILS 72 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134 GGEPL++ D+ + L K G + + TNG + + +D+I +S Sbjct: 73 GGEPLMRKDIFDITCELKKAGIKTYLSTNGILIGEDNINRIKEQLDYIGIS 123 >gi|296160272|ref|ZP_06843090.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. Ch1-1] gi|295889483|gb|EFG69283.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. Ch1-1] Length = 367 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 18/95 (18%) Query: 41 DRLSAQCRFC---DT---DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 D+ + +C +C +T D+ + + R + +Q+ L + + G ++ R +TGGE Sbjct: 43 DQCNFRCTYCMPRETFGADYPFLASS--ERMSFEQILKLAKAFTLLGVEKIR---ITGGE 97 Query: 95 PLLQVDVP-LIQALNKR----GFEI--AVETNGTI 122 PLL+ + LI+ L K G + A+ TNG++ Sbjct: 98 PLLRRGLESLIEQLAKLTTASGKPVELALTTNGSL 132 >gi|297527362|ref|YP_003669386.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Staphylothermus hellenicus DSM 12710] gi|297256278|gb|ADI32487.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Staphylothermus hellenicus DSM 12710] Length = 267 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 70/195 (35%), Gaps = 39/195 (20%) Query: 29 FSGCNLWSGREQDR-----LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 GCNL + + C + D +++L + +E I + Sbjct: 41 LCGCNLKCPFCHNWMLAINHPSTCHYLD---------------INKLIEELESARILIDY 85 Query: 84 EGRYCVLTGGEPLLQ---VDVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICV 133 +TGGEPL Q ++ L A N G I++ TN T+ P +D + Sbjct: 86 LH----VTGGEPLTQHRELEKMLTIAKNNIGVNISINTNFTLHKPLKHLINTGIVDHLAT 141 Query: 134 SPKAGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 K DL +E+ KL + + E + + ++ +D ++ A Sbjct: 142 DLKIPYDLLYGHSKEVADALWKLFLKSLTLVSEYSVPLELRIPIMKNIDIKVFRKHLAEA 201 Query: 189 ISYCFQNPKWRLSVQ 203 + ++ + + VQ Sbjct: 202 LDKLDKHSNYYVIVQ 216 >gi|297569896|ref|YP_003691240.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296925811|gb|ADH86621.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 355 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 16/92 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR ++ + ++ D+ ++++ VL+ Sbjct: 16 CNLNC--------VHCR----SSSELEAKEHPDFSFDEAKRILDD---IASYASPVVVLS 60 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ DV + +G + + TNGT+ Sbjct: 61 GGEPLLRDDVFEIAAYGTGKGLRMCLATNGTL 92 >gi|254467660|ref|ZP_05081068.1| radical SAM domain protein [Rhodobacterales bacterium Y4I] gi|206684234|gb|EDZ44719.1| radical SAM domain protein [Rhodobacterales bacterium Y4I] Length = 474 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 39/136 (28%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GCNL C +C D V +G K + A+++ + +++ Sbjct: 106 TGCNL-----------ACSYCYKEDLA-VPSKGQKMAFDTARKSAEMLLAENP--DRDSY 151 Query: 87 YCVLTGGEPLLQVDVPLIQA--------LNKRGFEI--AVETNGTIEPPQGIDW------ 130 V GGEPL ++PLI+ G + ++ TN T+ IDW Sbjct: 152 NIVFFGGEPL--SNLPLIRQVVDWAEPHFAALGKAVNFSLTTNATLLTEPLIDWLDEHRF 209 Query: 131 -ICVS---PKAGCDLK 142 + VS PKA DL Sbjct: 210 GLTVSIDGPKAQHDLN 225 >gi|300716075|ref|YP_003740878.1| Pyruvate formate lyase activating enzyme 1 [Erwinia billingiae Eb661] gi|299061911|emb|CAX59027.1| Pyruvate formate lyase activating enzyme 1 [Erwinia billingiae Eb661] Length = 246 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 50/150 (33%), Gaps = 27/150 (18%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V++L + G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEELMKDVVSYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKAGCDL 141 +GGE +LQ + +A + G ++TNG ID + V+ DL Sbjct: 72 GGVTASGGEAILQAEFVRDWFRACHAEGINTCLDTNGFVRRYDPVIDELLEVTDLVMLDL 131 Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERF 171 K QV V N+ DF R+ Sbjct: 132 KQINDD-----VHQVLVGVSNHRTLDFARY 156 >gi|224585929|ref|YP_002639728.1| pyruvate formate lyase II activase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224470457|gb|ACN48287.1| putative pyruvate formate lyase activating enzyme 2 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 279 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS--------------AQCRF 49 IF +L G+G VF F GC + S +C Sbjct: 11 IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLRCTP 65 Query: 50 C--DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 C D D + G +D+L + + I G L+GGE L+Q Sbjct: 66 CLRDADECPSGAFERIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 125 Query: 104 IQALNKRGFEIAVETNG 120 +Q L + G A+ET G Sbjct: 126 LQRLRRWGVPCAIETAG 142 >gi|147677311|ref|YP_001211526.1| Fe-S oxidoreductases [Pelotomaculum thermopropionicum SI] gi|146273408|dbj|BAF59157.1| predicted Fe-S oxidoreductases [Pelotomaculum thermopropionicum SI] Length = 330 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 20/110 (18%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105 C+ C + + ++ LI++ + + +GGEPL++ D+ L+ Sbjct: 15 CKHC---YRDAGAKAAEELSTEEGLALIDQ---IAGAGFKIMIFSGGEPLMRDDIFTLVA 68 Query: 106 ALNKRGFEIAVETNGTI-------------EPPQGIDWICVSPKAGCDLK 142 +RG TNGT+ GI V PK+ D + Sbjct: 69 RARERGLRPVFGTNGTLITGETARRLKEAGAAVMGISLDSVDPKSHDDFR 118 >gi|290955780|ref|YP_003486962.1| hypothetical protein SCAB_12261 [Streptomyces scabiei 87.22] gi|260645306|emb|CBG68392.1| putative hypothetical protein [Streptomyces scabiei 87.22] Length = 417 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 48/135 (35%), Gaps = 19/135 (14%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL SA + D + +++A I E + VL Sbjct: 25 CNLDCDYCYVYHSADTSWRDKPRLMDAAV------AERVAGRIAEHATAHDLPDVGIVLH 78 Query: 92 GGEPLL---QVDVPLI----QALNKRGFEIAV--ETNGTIEPPQGIDWI---CVSPKAGC 139 GGEPLL + L+ + L K G + +TNG + P +D + V Sbjct: 79 GGEPLLLGARRLEELLGILGRCLAKAGVPVRFSAQTNGVLLTPDILDVLLRHRVDVSVSL 138 Query: 140 DLKIKGGQELKLVFP 154 D + G + VFP Sbjct: 139 DG-TRAGHDRHRVFP 152 >gi|239815326|ref|YP_002944236.1| molybdenum cofactor biosynthesis protein A [Variovorax paradoxus S110] gi|239801903|gb|ACS18970.1| molybdenum cofactor biosynthesis protein A [Variovorax paradoxus S110] Length = 383 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 25/145 (17%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + + ++ + R LTGGE Sbjct: 51 DRCNFRCSYCMPKDVFDKDYQYLPHS-----ALLSFEEMTRLARLFAAHGVRKIRLTGGE 105 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTI-------EPPQGIDWICVSPKAGCD 140 PLL+ ++ LI L++ + + TNG++ G+ + VS + D Sbjct: 106 PLLRKNIEALIAQLSEIRTPGGEPLALTLTTNGSLLQRKAAALAAAGLQRVTVSLDSLDD 165 Query: 141 LKIKGGQELKLVFPQVNVSPENYIG 165 + ++ V E + Sbjct: 166 AVFRHMNDVDFPVADVLAGIEAALA 190 >gi|189501278|ref|YP_001960748.1| molybdenum cofactor biosynthesis protein A [Chlorobium phaeobacteroides BS1] gi|189496719|gb|ACE05267.1| molybdenum cofactor biosynthesis protein A [Chlorobium phaeobacteroides BS1] Length = 332 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 24/113 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + GI + ++ LIE + E R T Sbjct: 30 CNL-----------RCFYCKRESPGIPTPDDQQMKTGEIKTLIE---LLAEMGIRKIRFT 75 Query: 92 GGEPLLQVDV-PLIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134 GGEPLL+ D+ L+Q G E +++ TNGT+ G+D I +S Sbjct: 76 GGEPLLRPDIVDLVQIAKSTTGIETVSLTTNGTLLEKHFEALVSAGLDGINLS 128 >gi|194443202|ref|YP_002043379.1| pyruvate formate lyase II activase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401865|gb|ACF62087.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 292 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS--------------AQCRF 49 IF +L G+G VF F GC + S +C Sbjct: 24 IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLRCTP 78 Query: 50 C--DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 C D D + G +D+L + + I G L+GGE L+Q Sbjct: 79 CLRDADECPSGAFERIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 138 Query: 104 IQALNKRGFEIAVETNG 120 +Q L + G A+ET G Sbjct: 139 LQRLRRWGVPCAIETAG 155 >gi|161617257|ref|YP_001591222.1| pyruvate formate lyase II activase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161366621|gb|ABX70389.1| hypothetical protein SPAB_05098 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 279 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS--------------AQCRF 49 IF +L G+G VF F GC + S +C Sbjct: 11 IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLRCTP 65 Query: 50 C--DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 C D D + G +D+L + + I G L+GGE L+Q Sbjct: 66 CLRDADECPSGAFERIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 125 Query: 104 IQALNKRGFEIAVETNG 120 +Q L + G A+ET G Sbjct: 126 LQRLRRWGVPCAIETAG 142 >gi|116754428|ref|YP_843546.1| radical SAM domain-containing protein [Methanosaeta thermophila PT] gi|116665879|gb|ABK14906.1| Radical SAM domain protein [Methanosaeta thermophila PT] Length = 342 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 17/99 (17%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 +C C ++ ++D+ LI+E + + +LTGGEPL+ + Sbjct: 2 RCDHC---YIDANDEMTDELSLDEGIRLIDEL---ADLKIPMLILTGGEPLMSRNF-WAY 54 Query: 106 ALN--KRGFEIAVETNGTIEPPQ--------GIDWICVS 134 A + ++ A+ TNGT+ P+ GI ++ VS Sbjct: 55 AFHAKEKNLRCAISTNGTLITPEVAMLLREAGIRYVGVS 93 >gi|111222128|ref|YP_712922.1| putative coenzyme PQQ synthesis protein [Frankia alni ACN14a] gi|111149660|emb|CAJ61353.1| putative Coenzyme PQQ synthesis protein [Frankia alni ACN14a] Length = 369 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 18/99 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C FV +G +++ D + E LT Sbjct: 37 CNL-----------HCAHC---FVS-ATRQGQTMPYERIVDTV--IPRLAECRVERVTLT 79 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGID 129 GGEP L + + ++ A G + + TN T ID Sbjct: 80 GGEPTLHLRFLDVVTAFRSAGMAVGICTNATTLTAAQID 118 >gi|119719510|ref|YP_920005.1| putative molybdenum cofactor biosynthesis protein A [Thermofilum pendens Hrk 5] gi|119524630|gb|ABL78002.1| putative molybdenum cofactor biosynthesis protein A [Thermofilum pendens Hrk 5] Length = 348 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 16/99 (16%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LI 104 C FC + + ++ ++ G + LTGGEPLL+ D+ ++ Sbjct: 32 NCVFC---HGEGEPPNNALLSASEIVEVASVAHSLGVGTFK---LTGGEPLLRKDLERIV 85 Query: 105 QALNK--RGFEIAVETNGTI-------EPPQGIDWICVS 134 L RG E+++ TNG G+D + VS Sbjct: 86 AGLKSFGRGVEVSLTTNGFFLEKRVPSLVEAGLDRVNVS 124 >gi|294013183|ref|YP_003546643.1| putative radical SAM [Sphingobium japonicum UT26S] gi|292676513|dbj|BAI98031.1| putative radical SAM [Sphingobium japonicum UT26S] Length = 382 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 35/111 (31%), Gaps = 21/111 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWI---TGEKEGRY 87 CNL C +C +G + + D + D + + + Sbjct: 22 CNL-----------DCSYCYVYHMGDNAWRDQPKQMSDAVLDAVARRLADQYALQAVPFS 70 Query: 88 CVLTGGEPLL---QVDVPLIQALNK---RGFEIAVETNGTIEPPQGIDWIC 132 VL GGEPLL L I ++TNG + ID + Sbjct: 71 VVLHGGEPLLLGVAKLERFCAKLRDALPHPCGIHIQTNGALLNEPIIDVLV 121 >gi|14590694|ref|NP_142762.1| nitrite reductase [Pyrococcus horikoshii OT3] gi|3257237|dbj|BAA29920.1| 552aa long hypothetical nitrite reductase [Pyrococcus horikoshii OT3] Length = 552 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 20/123 (16%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104 +C+ C + ++++ L+++ G L+GGEP + + ++ Sbjct: 162 RCKHC---YQRADKPLPSELSLEEKLMLVDQLDRAGVAA---VALSGGEPTIHPHFLRIV 215 Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENY 163 + L+ RG +V TNG W + K + +K G LK V V+ PE + Sbjct: 216 KELSSRGIHTSVATNG---------W-TFADKEKLEEAVKAG--LKYVEISVDSAKPEKH 263 Query: 164 IGF 166 F Sbjct: 264 DEF 266 >gi|148251870|ref|YP_001236455.1| hypothetical protein BBta_0254 [Bradyrhizobium sp. BTAi1] gi|146404043|gb|ABQ32549.1| hypothetical protein BBta_0254 [Bradyrhizobium sp. BTAi1] Length = 471 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 61/181 (33%), Gaps = 22/181 (12%) Query: 31 GCNLWSGREQDRLSAQCR-----------FCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G D C C F + + + + + + Sbjct: 85 GCPYDCGLCPDHEQHSCLALIEITDHCNLTCPVCFA-ESSPQRSHFTPLATVERMLDALV 143 Query: 80 TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKA 137 E E ++GGEP L D ++ A+ R + + TNG + + D++ K Sbjct: 144 KSEGEPDLVQISGGEPTLHPDFFDILAAVRARPIRHVMINTNG-LRIAREPDFVA---KL 199 Query: 138 GCDLKIKGGQELKLVFPQVNVS-PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196 + K G E+ L F ++ + N G D R Q ++ + + ++ + Sbjct: 200 A---ETKRGLEVYLQFDSLSRAGLTNIRGADLRRIRQQALENLEHQGISTTLVATIKRGV 256 Query: 197 K 197 Sbjct: 257 N 257 >gi|304395876|ref|ZP_07377758.1| coenzyme PQQ biosynthesis protein E [Pantoea sp. aB] gi|304356245|gb|EFM20610.1| coenzyme PQQ biosynthesis protein E [Pantoea sp. aB] Length = 380 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF + +Q ++ + G + + Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFAQQEKE----LTTEQWIEVFRQARAMGSVQLGF-- 64 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL++ D+P LI+A GF + T+G Sbjct: 65 -SGGEPLVRKDLPELIKAARDLGFYTNLITSG 95 >gi|330862884|emb|CBX73021.1| pyruvate formate-lyase 1-activating enzyme [Yersinia enterocolitica W22703] Length = 176 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G V++L Sbjct: 25 VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A ++ G ++TNG Sbjct: 68 NASGGGVTASGGEAILQAEFVRDWFRACHEEGIHTCLDTNG 108 >gi|325967847|ref|YP_004244039.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28] gi|323707050|gb|ADY00537.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28] Length = 385 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 31/144 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR C ++ ++D ++++ G +Y L Sbjct: 52 CNL-----------ECRHC---YLLAGKPLSNELSIDDWLLILDKLRDLG---AKYVYLL 94 Query: 92 GGEPLLQVDVPLIQAL---NKRGFEIAVETNGTIE--------PPQGIDWICVS---PKA 137 GGEP+L + L++ + G I++ TNGT+ G+D + VS P Sbjct: 95 GGEPMLLIRRGLLKIISHAKDLGLYISMSTNGTLVNRESALQLKRAGLDQVQVSLDGPNP 154 Query: 138 GCDLKIKGGQELKLVFPQVNVSPE 161 + I+G VNV E Sbjct: 155 AVNDVIRGIGSFDKAVRAVNVFRE 178 >gi|303257844|ref|ZP_07343854.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderiales bacterium 1_1_47] gi|331000298|ref|ZP_08323981.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Parasutterella excrementihominis YIT 11859] gi|302859447|gb|EFL82528.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Burkholderiales bacterium 1_1_47] gi|329572330|gb|EGG53988.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Parasutterella excrementihominis YIT 11859] Length = 255 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 29/131 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 VF GC +C +C D + +G Y + D ++ Sbjct: 41 VFI--KGCP-----------WKCVYCQNEDLQSREMNEGDGYVSWEYIDHFLDRRKGLID 87 Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKA 137 V +GGEP + +P I+ + ++G++I + T G +DW+ Sbjct: 88 G---VVFSGGEPCVDPALPDAIKRVKEKGYKIGLHTGGMYPRRLRAILPYLDWV------ 138 Query: 138 GCDLKIKGGQE 148 G D+K E Sbjct: 139 GLDIKAPLSDE 149 >gi|251789946|ref|YP_003004667.1| pyruvate formate lyase-activating enzyme 1 [Dickeya zeae Ech1591] gi|247538567|gb|ACT07188.1| pyruvate formate-lyase activating enzyme [Dickeya zeae Ech1591] Length = 246 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 58/179 (32%), Gaps = 40/179 (22%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V++L + G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKEVVTYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI----EPPQGIDWICVSPKAGC 139 +GGE +LQ + +A +++G ++TNG + + + Sbjct: 72 GGVTASGGEAILQAEFVRDWFRACHEQGINTCLDTNGFVRRYDPVIDELLDVT------- 124 Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198 DL + ++L Q V N+ +F R+ + N I Y P W Sbjct: 125 DLVMLDLKQLNDEVHQNLVGVSNHRTLEFARY--------LAKRNQRTWIRYVVV-PDW 174 >gi|269797240|ref|YP_003311140.1| radical SAM protein [Veillonella parvula DSM 2008] gi|269093869|gb|ACZ23860.1| Radical SAM domain protein [Veillonella parvula DSM 2008] Length = 409 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 14/102 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + C C + I+ + QL ++++ G + V++GGEP ++ Sbjct: 85 DRCNLSCVGC---YSYIEERNTQKDLTTAQLKHIVDQLVACGVER---LVISGGEPFIRN 138 Query: 100 DVP-LIQALNKRGFEIAVETNGTIEP------PQGIDWICVS 134 D+ ++ + K +AV TNGT++ ID + VS Sbjct: 139 DMADILAHIKKHNISVAVITNGTMDWNRVEKAIPFIDSLSVS 180 >gi|167587143|ref|ZP_02379531.1| molybdenum cofactor biosynthesis protein A [Burkholderia ubonensis Bu] Length = 369 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 25/142 (17%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 D+ + +C +C D + + + R + QL + G ++ R LTGGE Sbjct: 43 DQCNFRCTYCMPRESFDAGYAFMPSS--ARLSFAQLTRIARAFVALGVEKIR---LTGGE 97 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ + LI++L + EIA+ TNG++ G+ + VS A D Sbjct: 98 PLLRRGIETLIESLAALTTLDGKPVEIALTTNGSLLAAKARALRDAGLGRVTVSLDAIDD 157 Query: 141 LKIKGGQELKLVFPQVNVSPEN 162 + ++ + ++ E Sbjct: 158 AVFRKMSDVDMPVSRILAGIEA 179 >gi|148243988|ref|YP_001220226.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Acidiphilium cryptum JF-5] gi|146400551|gb|ABQ29084.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Acidiphilium cryptum JF-5] Length = 235 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 55/144 (38%), Gaps = 50/144 (34%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQ 77 GR+A F R GC L +CR+C + D +GT R+ +E Sbjct: 22 GRLAATFFLR--GCPL-----------RCRYCHNVDLQARRGTSPLRW--------LEAL 60 Query: 78 WITGEKEGRY--CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134 ++ G V +GGEP + + +I+ + GFE+A+ T G VS Sbjct: 61 TWLDQRRGLLDSVVFSGGEPTMDRCLEQMIRDVRSLGFEVALHTAG------------VS 108 Query: 135 PK-----------AGCDLKIKGGQ 147 PK G D+K G Sbjct: 109 PKRLERVLPMLQWVGLDIKAPFGD 132 >gi|23016836|ref|ZP_00056588.1| COG0535: Predicted Fe-S oxidoreductases [Magnetospirillum magnetotacticum MS-1] Length = 355 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 14/109 (12%) Query: 38 REQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTGG- 93 + +R + +C +C + G + L A ++E + +GG Sbjct: 35 KPTNRCNHKCWYC--AYRTDDLKLGEDMDESDLIPEAKMMEIADDIVAMGVKAVTFSGGG 92 Query: 94 EPLLQVDVP-LIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134 EPLL +P +I L G +A TNG + W+ VS Sbjct: 93 EPLLYKPLPEVIDRLAAGGVRVATLTNGANLKGKVAQSLARHATWVRVS 141 >gi|225017329|ref|ZP_03706521.1| hypothetical protein CLOSTMETH_01255 [Clostridium methylpentosum DSM 5476] gi|224949946|gb|EEG31155.1| hypothetical protein CLOSTMETH_01255 [Clostridium methylpentosum DSM 5476] Length = 263 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 26/107 (24%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEE 76 +F GC L +CR+C + + + G +A+++ E Sbjct: 30 IF--LKGCPL-----------RCRWCCNPESQHHQVEEMVVDGKPKTMGRDVTVAEVLSE 76 Query: 77 QWITGEKEGRY---CVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 R L+GGE L Q + +++A + G A+ET Sbjct: 77 VLKDASYYRRSGGGVTLSGGECLFQPEFAAAILRACQEHGVNTAIET 123 >gi|109898477|ref|YP_661732.1| molybdenum cofactor biosynthesis protein A [Pseudoalteromonas atlantica T6c] gi|109700758|gb|ABG40678.1| GTP cyclohydrolase subunit MoaA [Pseudoalteromonas atlantica T6c] Length = 322 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 38/148 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN CDTD + L ++ + +T Sbjct: 21 CNFSCEYCLPDGYQ----CDTDR-----------DFLSLIEITRIAGAFAKLGTSKIRIT 65 Query: 92 GGEPLLQVDVPLIQALNK----RGF-EIAVETNGTIEPPQGID-WI------------CV 133 GGEP L+ D+P A+ G ++A+ TNG + P ID W+ + Sbjct: 66 GGEPSLRKDLP--DAIRACANTPGIKQVAITTNG-YKLPDHIDSWVEAGLTQMNVSIDSL 122 Query: 134 SPKAGCDLKIKGGQELKLVFPQVNVSPE 161 P+ I G +L ++ ++ + E Sbjct: 123 DPRMFAS--ITGHDKLDVILRGIDRAVE 148 >gi|227505189|ref|ZP_03935238.1| pyruvate radical-activating enzyme [Corynebacterium striatum ATCC 6940] gi|227198217|gb|EEI78265.1| pyruvate radical-activating enzyme [Corynebacterium striatum ATCC 6940] Length = 234 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 27/119 (22%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 +GC L +C +C + + G G Y+ L+ + + Sbjct: 42 LNGCPL-----------RCSYCHNPQLQVFGP--GSYSWQDALSLLCSRRGLLDG----V 84 Query: 89 VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE---------PPQGIDWICVSPKA 137 V +GGEPL +P I + GF++ + T+G + P +WI + KA Sbjct: 85 VFSGGEPLSAPGLPQAIAEAHAAGFKVGLHTSGYLPGRLDKLMAHPETRPEWIGIDVKA 143 >gi|255306022|ref|ZP_05350194.1| glycerol dehydratase activator [Clostridium difficile ATCC 43255] Length = 300 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%) Query: 88 CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWICVSPKAGC 139 +GGEP LQ+D L+ +G IA+ET G + + ID I V K+ Sbjct: 128 ITFSGGEPTLQIDFLRELVDIFYDKGINIAIETCGYFDWNKVNDVFEKIDHIFVDIKSMD 187 Query: 140 D 140 D Sbjct: 188 D 188 >gi|301300126|ref|ZP_07206342.1| pyruvate formate-lyase 1-activating enzyme [Lactobacillus salivarius ACS-116-V-Col5a] gi|300215439|gb|ADJ79852.1| Pyruvate formate-lyase activating enzyme [Lactobacillus salivarius CECT 5713] gi|300852300|gb|EFK79968.1| pyruvate formate-lyase 1-activating enzyme [Lactobacillus salivarius ACS-116-V-Col5a] Length = 278 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 39/154 (25%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC++ +C+FC DT + G + +++ + + Sbjct: 35 IRFVAFMQGCHM-----------RCKFCHNPDT----WKTRVGSQMTTEEVLNK-ALPYR 78 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG---TIEPP------QGI 128 + + L+GGE LLQ+D + L + + G ++T G T P + + Sbjct: 79 SFWGDKGGITLSGGEILLQIDFALELFKMCKEEGISTCLDTCGQPFTRREPWFSKFNELM 138 Query: 129 DWICVSPKAGCDLKIKGGQELKLV--FPQVNVSP 160 D+ + D+K E K + FP N+ Sbjct: 139 DYTDI---LLVDIKHINSDEHKRLTGFPNDNILD 169 >gi|313117027|ref|YP_004038151.1| predicted Fe-S oxidoreductase [Halogeometricum borinquense DSM 11551] gi|312294979|gb|ADQ69015.1| predicted Fe-S oxidoreductase [Halogeometricum borinquense DSM 11551] Length = 403 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 19/98 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL+ DT+ + T G+ +D LAD + Sbjct: 49 CNLYCAHCYAAA-------DTETAPGELSTAEGKRLLDDLAD----------YGVPVVLF 91 Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQG 127 +GGEPL++ D V L++ RG + TNGT+ P+ Sbjct: 92 SGGEPLVRDDVVELVEYAADRGIRPVLSTNGTLITPEK 129 >gi|218670825|ref|ZP_03520496.1| putative biosynthetic heme protein [Rhizobium etli GR56] Length = 172 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 17/118 (14%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C VG + KG +N++ + LIE+ G R ++ Sbjct: 49 CNL-----------GCHHCYIAGVGPKA-KGIDFNLEAIQGLIEQALPNGL---RKVKVS 93 Query: 92 GGEPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147 GGEP++ + + +++ L G E+ ETNGT+ I+ + P + + Sbjct: 94 GGEPMVHKEFMAVMEYLASCGLKELVFETNGTLFDEFTIEQLSRLPNLTVFISLDHFD 151 >gi|146306997|ref|YP_001187462.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas mendocina ymp] gi|226704997|sp|A4XTR4|PQQE_PSEMY RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|145575198|gb|ABP84730.1| coenzyme PQQ biosynthesis protein E [Pseudomonas mendocina ymp] Length = 384 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 58/172 (33%), Gaps = 16/172 (9%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C + +G + + ++ + G + + + Sbjct: 18 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGAELSTAEWIEVFRQARELGAAQLGF---S 72 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142 GGEPL+ Q LI A G+ + T+G G+D I +S +A + Sbjct: 73 GGEPLVRQDLAELIAAARGLGYYTNLITSGIGLTEARIAEFADAGLDHIQISFQAADEEV 132 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 K F Q ++ + L + +N I C + Sbjct: 133 NNLLAGSKKAFAQ-KLAMARAVKAHGYPMVLNFVTHRHNIDNIERIIELCLE 183 >gi|91201993|emb|CAJ75053.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 303 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 20/100 (20%) Query: 24 AVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 +F S CNL C C + I K + L +++ + G Sbjct: 11 TIFISLLSDCNL-----------ACDHC---YARIYKEK-KILPGEMLENILLQAESLGS 55 Query: 83 KEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 LTGGEP+L ++ I + +K F I + TNGT+ Sbjct: 56 FIFM---LTGGEPMLYPNLMEILSGHKNSFFILI-TNGTM 91 >gi|16767380|ref|NP_462995.1| pyruvate formate lyase II activase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167551385|ref|ZP_02345140.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167991694|ref|ZP_02572793.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168262975|ref|ZP_02684948.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197265842|ref|ZP_03165916.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198242232|ref|YP_002218044.1| pyruvate formate lyase II activase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|207859305|ref|YP_002245956.1| pyruvate formate lyase II activase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|16422682|gb|AAL22954.1| putative pyruvate formate lyase activating enzyme 2 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197244097|gb|EDY26717.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197936748|gb|ACH74081.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205323778|gb|EDZ11617.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329972|gb|EDZ16736.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205348294|gb|EDZ34925.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206711108|emb|CAR35482.1| pyruvate formate-lyase 2 activating enzyme (ec 1.97.1.4) (pfl-activating enzyme) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261249231|emb|CBG27093.1| pyruvate formate-lyase 2 activating enzyme (ec 1.97.1.4) (pfl-activating enzyme) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996418|gb|ACY91303.1| pyruvate formate lyase II activase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160622|emb|CBW20153.1| pyruvate formate-lyase 2 activating enzyme (ec 1.97.1.4) (pfl-activating enzyme) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915232|dbj|BAJ39206.1| pyruvate formate lyase 2-activating enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225408|gb|EFX50466.1| Pyruvate formate-lyase activating enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132461|gb|ADX19891.1| pyruvate formate lyase II activase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326625836|gb|EGE32181.1| pyruvate formate lyase II activase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 292 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS--------------AQCRF 49 IF +L G+G VF F GC + S +C Sbjct: 24 IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLRCTP 78 Query: 50 C--DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 C D D + G +D+L + + I G L+GGE L+Q Sbjct: 79 CLRDADECPSGAFERIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 138 Query: 104 IQALNKRGFEIAVETNG 120 +Q L + G A+ET G Sbjct: 139 LQRLRRWGVPCAIETAG 155 >gi|323483059|ref|ZP_08088452.1| glycyl-radical enzyme activating protein family [Clostridium symbiosum WAL-14163] gi|323691495|ref|ZP_08105766.1| glycyl-radical enzyme activating protein family [Clostridium symbiosum WAL-14673] gi|323403599|gb|EGA95904.1| glycyl-radical enzyme activating protein family [Clostridium symbiosum WAL-14163] gi|323504468|gb|EGB20259.1| glycyl-radical enzyme activating protein family [Clostridium symbiosum WAL-14673] Length = 297 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 6/95 (6%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK----GGRYNVDQLADLIEEQWITGEKEG 85 +GC + + C C + G G +D++ + + + ++ Sbjct: 66 AGCLNFENNNLVFSADNCTGCKSCITQCPGKALTFVGNMMELDEVMEEVLKDMDFYQESK 125 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 L+GGE L+Q D L++ + G A+ET Sbjct: 126 GGVTLSGGEVLVQPDFAAALLKKCKENGIHTALET 160 >gi|313894936|ref|ZP_07828495.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Selenomonas sp. oral taxon 137 str. F0430] gi|320530456|ref|ZP_08031514.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Selenomonas artemidis F0399] gi|312976389|gb|EFR41845.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Selenomonas sp. oral taxon 137 str. F0430] gi|320137289|gb|EFW29213.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Selenomonas artemidis F0399] Length = 173 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 24/102 (23%) Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI 74 GEG R+ VF GC +C C G V + + Sbjct: 22 GEGI---RLTVF--TQGCP-----------RRCPGCHNPETQ-PLVGGRTTTVGAVVAEL 64 Query: 75 EEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEI 114 +E + L+GGEP LQ +PL +A + RG ++ Sbjct: 65 DENPLLTG-----LTLSGGEPFLQPGALLPLARAAHARGLDV 101 >gi|320530823|ref|ZP_08031861.1| radical SAM domain protein [Selenomonas artemidis F0399] gi|320136909|gb|EFW28853.1| radical SAM domain protein [Selenomonas artemidis F0399] Length = 396 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +CR C ++ G K G ++ I+ + + Sbjct: 47 CNL-----------RCRHC---YMESDGQKYAGELTTEEAKRFID---GLADFRVPVLLF 89 Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +GGEPL++ D L + RG + TNGT+ Sbjct: 90 SGGEPLIRPDFFELAEYARDRGVRPTLSTNGTL 122 >gi|317968309|ref|ZP_07969699.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp. CB0205] Length = 342 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 39/116 (33%), Gaps = 36/116 (31%) Query: 27 CRF---SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 R + CNL C +C R +Q +IE G Sbjct: 17 LRLSLTARCNL-----------ACPYC----QPDGEEAPDRLTTEQRLRVIEAACSLGVS 61 Query: 84 EGRYCVLTGGEPLLQVDVPLIQALNKRGF-------------EIAVETNGTIEPPQ 126 R LTGGEPLL D+ + L G +IA+ TNG + P+ Sbjct: 62 SLR---LTGGEPLLTPDLE--ELLEAIGLARRHTNSPLRELSDIALTTNGLLLSPE 112 >gi|302330040|gb|ADL20234.1| Anaerobic ribonucleoside-triphosphate reductase activating protein [Corynebacterium pseudotuberculosis 1002] gi|308275721|gb|ADO25620.1| Anaerobic ribonucleoside-triphosphate reductase activating protein [Corynebacterium pseudotuberculosis I19] Length = 228 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 29/126 (23%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 A F GC L +C +C +Q G +++ + L+ + Sbjct: 36 VAAAF--TQGCPL-----------RCVYC--HNSQLQAFTPGAHSLAEFLSLLSSRHGLI 80 Query: 82 EKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG---------TIEPPQGIDWI 131 + V++GGEP + I A++ GF + + T G +P DW+ Sbjct: 81 DAA----VISGGEPTAVRGLGDAIAAIHNIGFPVGIHTCGYAPSRIAELLRDPATTPDWV 136 Query: 132 CVSPKA 137 + KA Sbjct: 137 GLDIKA 142 >gi|254974647|ref|ZP_05271119.1| glycerol dehydratase activator [Clostridium difficile QCD-66c26] gi|255092037|ref|ZP_05321515.1| glycerol dehydratase activator [Clostridium difficile CIP 107932] gi|255313773|ref|ZP_05355356.1| glycerol dehydratase activator [Clostridium difficile QCD-76w55] gi|255516455|ref|ZP_05384131.1| glycerol dehydratase activator [Clostridium difficile QCD-97b34] gi|255649553|ref|ZP_05396455.1| glycerol dehydratase activator [Clostridium difficile QCD-37x79] gi|260682720|ref|YP_003214005.1| glycerol dehydratase activator [Clostridium difficile CD196] gi|260686318|ref|YP_003217451.1| glycerol dehydratase activator [Clostridium difficile R20291] gi|306519680|ref|ZP_07406027.1| glycerol dehydratase activator [Clostridium difficile QCD-32g58] gi|260208883|emb|CBA61850.1| glycerol dehydratase activator [Clostridium difficile CD196] gi|260212334|emb|CBE03127.1| glycerol dehydratase activator [Clostridium difficile R20291] Length = 300 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%) Query: 88 CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWICVSPKAGC 139 +GGEP LQ+D L+ +G IA+ET G + + ID I V K+ Sbjct: 128 ITFSGGEPTLQIDFLRELVDIFYDKGINIAIETCGYFDWNKVNDVFEKIDHIFVDIKSMD 187 Query: 140 D 140 D Sbjct: 188 D 188 >gi|116754452|ref|YP_843570.1| molybdenum cofactor biosynthesis protein A [Methanosaeta thermophila PT] gi|116665903|gb|ABK14930.1| GTP cyclohydrolase subunit MoaA [Methanosaeta thermophila PT] Length = 298 Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 21/94 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C GG + + +++ G R +T Sbjct: 22 CNL-----------RCIYC----HHEGEVTGGEISREMAVNVVNAASRLG---IRSVKIT 63 Query: 92 GGEPLLQVDV-PLIQALNK--RGFEIAVETNGTI 122 GGEPL++ D+ +I + G EI++ TNG Sbjct: 64 GGEPLMRSDLEEMIAGFKEVAPGVEISITTNGVY 97 >gi|300711118|ref|YP_003736932.1| molybdenum cofactor biosynthesis protein A [Halalkalicoccus jeotgali B3] gi|299124801|gb|ADJ15140.1| molybdenum cofactor biosynthesis protein A [Halalkalicoccus jeotgali B3] Length = 327 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 23/126 (18%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + C +C DT G + + D + +E + E TGGE Sbjct: 21 DRCNFDCVYCHNEGLGDTR--GPMDPQDDEMSADDVVRFLE---VVREFGVEKVKFTGGE 75 Query: 95 PLLQVDVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS-----PKAGCDLK 142 P+L+ D+ I E+++ TNGT P G+ + VS PK ++ Sbjct: 76 PMLRDDLEEIIRRTPDEMEVSMTTNGTFLPGRAEGLVEAGLSRVNVSQDALDPKEFAEIT 135 Query: 143 IKGGQE 148 G + Sbjct: 136 KSGAYD 141 >gi|126698713|ref|YP_001087610.1| glycerol dehydratase activator [Clostridium difficile 630] gi|255100132|ref|ZP_05329109.1| glycerol dehydratase activator [Clostridium difficile QCD-63q42] gi|115250150|emb|CAJ67971.1| Pyruvate formate-lyase 2-activating enzyme [Clostridium difficile] Length = 300 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%) Query: 88 CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWICVSPKAGC 139 +GGEP LQ+D L+ +G IA+ET G + + ID I V K+ Sbjct: 128 ITFSGGEPTLQIDFLRELVDIFYDKGINIAIETCGYFDWNKVNDVFEKIDHIFVDIKSMD 187 Query: 140 D 140 D Sbjct: 188 D 188 >gi|62182575|ref|YP_218992.1| pyruvate formate lyase II activase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62130208|gb|AAX67911.1| putative pyruvate formate lyase activating enzyme 2 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322717076|gb|EFZ08647.1| pyruvate formate lyase II activase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 292 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS--------------AQCRF 49 IF +L G+G VF F GC + S +C Sbjct: 24 IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLRCTP 78 Query: 50 C--DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 C D D + G +D+L + + I G L+GGE L+Q Sbjct: 79 CLRDADECPSGAFERIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 138 Query: 104 IQALNKRGFEIAVETNG 120 +Q L + G A+ET G Sbjct: 139 LQRLRRWGVPCAIETAG 155 >gi|330503846|ref|YP_004380715.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas mendocina NK-01] gi|328918132|gb|AEB58963.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas mendocina NK-01] Length = 384 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 57/172 (33%), Gaps = 16/172 (9%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C Q +G + + ++ + G + + + Sbjct: 18 PLWLLAELTYRCPLQCPYCSNPLDFAQ--QGAELSTAEWIEVFRQARELGAAQLGF---S 72 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142 GGEPL Q LI A G+ + T+G G+D I +S +A + Sbjct: 73 GGEPLARQDLAELIAAARGLGYYTNLITSGIGLTEARIAEFAEAGLDHIQISFQAADEEV 132 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 K F Q ++ + L + +N I C + Sbjct: 133 NNLLAGSKKAFAQ-KLAMARAVKAHGYPMVLNFVTHRHNIDNIERIIELCLE 183 >gi|227892250|ref|ZP_04010055.1| pyruvate formate-lyase activating enzyme [Lactobacillus salivarius ATCC 11741] gi|227865972|gb|EEJ73393.1| pyruvate formate-lyase activating enzyme [Lactobacillus salivarius ATCC 11741] Length = 278 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 39/154 (25%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC++ +C+FC DT + G + +++ + + Sbjct: 35 IRFVVFMQGCHM-----------RCKFCHNPDT----WKTRVGSQMTTEEVLNK-ALPYR 78 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG---TIEPP------QGI 128 + + L+GGE LLQ+D + L + + G ++T G T P + + Sbjct: 79 SFWGDKGGITLSGGEILLQIDFALELFKMCKEEGISTCLDTCGQPFTRREPWFSKFNELM 138 Query: 129 DWICVSPKAGCDLKIKGGQELKLV--FPQVNVSP 160 D+ + D+K E K + FP N+ Sbjct: 139 DYTDI---LLVDIKHINSDEHKRLTGFPNDNILD 169 >gi|168467465|ref|ZP_02701302.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195630238|gb|EDX48878.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 292 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS--------------AQCRF 49 IF +L G+G VF F GC + S +C Sbjct: 24 IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLRCTP 78 Query: 50 C--DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 C D D + G +D+L + + I G L+GGE L+Q Sbjct: 79 CLRDADECPSGAFERIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 138 Query: 104 IQALNKRGFEIAVETNG 120 +Q L + G A+ET G Sbjct: 139 LQRLRRWGVPCAIETAG 155 >gi|320536805|ref|ZP_08036802.1| putative anaerobic ribonucleoside-triphosphate reductase activating protein [Treponema phagedenis F0421] gi|320146341|gb|EFW37960.1| putative anaerobic ribonucleoside-triphosphate reductase activating protein [Treponema phagedenis F0421] Length = 239 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 10/102 (9%) Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 AVF GCN+ + A C V +Y+ L + + Sbjct: 9 AAVF--LPGCNMRCPYCYNAELA----C--ASVTTGPETNEKYSYVPLEEAVRHLEKRAG 60 Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 V +GGE LL +P LIQ G I ++TNG + Sbjct: 61 VLTG-VVFSGGEALLSPALPDLIQKARSVGLAIKLDTNGLVP 101 >gi|310641236|ref|YP_003945994.1| molybdenum cofactor biosynthesis protein [Paenibacillus polymyxa SC2] gi|309246186|gb|ADO55753.1| Molybdenum cofactor biosynthesis protein [Paenibacillus polymyxa SC2] Length = 292 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 20/97 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC + + +++++ + + Sbjct: 16 CNL-----------ACSFCPQTQRVKKFIDPEVFR-----NVLDQVKPHTDYIYLHVK-- 57 Query: 92 GGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQG 127 GEPLL + L+ ++ +++G ++ + TNGT+ P G Sbjct: 58 -GEPLLHPKIDLLLESAHEKGLKVNITTNGTLLPKTG 93 >gi|283780120|ref|YP_003370875.1| molybdenum cofactor biosynthesis protein A [Pirellula staleyi DSM 6068] gi|283438573|gb|ADB17015.1| molybdenum cofactor biosynthesis protein A [Pirellula staleyi DSM 6068] Length = 333 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 10/85 (11%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 DR + +C +C DT + + +++ L+ G + R LTGGEPLL+ Sbjct: 24 DRCNIRCFYCMPDTALRFL--PRSEILTFEEIERLVRILAPLGVSKLR---LTGGEPLLR 78 Query: 99 VDVP-LIQALNK-RGF-EIAVETNG 120 D+ L++ L+ G E+A+ TNG Sbjct: 79 ADLAGLVRRLSAIEGVAEVAMTTNG 103 >gi|229102763|ref|ZP_04233462.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock3-28] gi|228680695|gb|EEL34873.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock3-28] Length = 337 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 14/89 (15%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C +D+ +Q D++ L G + R LTGGE Sbjct: 22 DRCNFRCTYCMPAEVFGSDYAFLQEEF--LLTFDEIERLARLFISMGVNKIR---LTGGE 76 Query: 95 PLLQVDVP-LIQALNK-RGFE-IAVETNG 120 PLL+ D+P LI L K G I + TNG Sbjct: 77 PLLRKDLPKLIARLAKLEGLTDIGLTTNG 105 >gi|171315895|ref|ZP_02905125.1| coenzyme PQQ biosynthesis protein E [Burkholderia ambifaria MEX-5] gi|171098991|gb|EDT43779.1| coenzyme PQQ biosynthesis protein E [Burkholderia ambifaria MEX-5] Length = 374 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 9/91 (9%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 LW E R C FC + + T G + D +I + G + Sbjct: 13 PLWLLAELTYRCPLHCAFC---YNPVDFATHGAELDTDAWRTVIGDARALGAAQ---IGF 66 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL + D+ L+Q GF + T+G Sbjct: 67 SGGEPLQRDDLEVLVQHARSLGFYTNLITSG 97 >gi|168185707|ref|ZP_02620342.1| pyruvate formate-lyase 2-activating enzyme [Clostridium botulinum C str. Eklund] gi|169296263|gb|EDS78396.1| pyruvate formate-lyase 2-activating enzyme [Clostridium botulinum C str. Eklund] Length = 304 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 G +VD+ + +++ + K G L+GGE LLQ + + L++ G+ A+ET Sbjct: 106 GESVSVDETIEKLKKDSVYYRKSGGGVTLSGGEALLQPEFAIELLKRCKALGWHTAIET 164 >gi|218779575|ref|YP_002430893.1| glycyl-radical enzyme activating protein family [Desulfatibacillum alkenivorans AK-01] gi|218760959|gb|ACL03425.1| Alkylsuccinate synthase (I) glycyl radical activating enzyme (AssD1) [Desulfatibacillum alkenivorans AK-01] Length = 320 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119 G V ++ D +E + G L+GGEP D L+ RG ++TN Sbjct: 114 GKLLTVKEILDEVESDLPFYKNSGGGMTLSGGEPTAHPDFAEKLLAGAKARGLHTCLDTN 173 Query: 120 G 120 G Sbjct: 174 G 174 >gi|11499588|ref|NP_070830.1| molybdenum cofactor biosynthesis protein A [Archaeoglobus fulgidus DSM 4304] gi|6685645|sp|O28273|MOAA_ARCFU RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|2648531|gb|AAB89248.1| molybdenum cofactor biosynthesis protein (moaA) [Archaeoglobus fulgidus DSM 4304] Length = 296 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 17/71 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + G + +++ ++ G ++ + +T Sbjct: 21 CNL-----------RCFYC---HKEGESNPGEEISAERIVEIARAFKELGVRKLK---IT 63 Query: 92 GGEPLLQVDVP 102 GGEPLL+ D+P Sbjct: 64 GGEPLLRKDLP 74 >gi|323476689|gb|ADX81927.1| Radical SAM domain protein [Sulfolobus islandicus HVE10/4] Length = 378 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 7/91 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + + + + +C C ++ ++ LI+E E +++G Sbjct: 36 PVVTWNLTLKCNLKCLHC---YINSSPEGEDGSTTEEALRLIDEM---AEMRIPLIIMSG 89 Query: 93 GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GEPL++ D L +G ++A+ TNGT+ Sbjct: 90 GEPLMRRDFFELASYARIKGIKLALSTNGTL 120 >gi|268324535|emb|CBH38123.1| conserved hypothetical protein, radical SAM superfamily [uncultured archaeon] Length = 394 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 16/92 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL D D + +D LA++ + T Sbjct: 51 CNLACTHCYINAGL-----DVDISNELSLAEAKAFIDDLAEM----------RAPLILFT 95 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPL++ D L ++G + A+ TNGT+ Sbjct: 96 GGEPLMRKDFWELATYATEKGLKTAISTNGTL 127 >gi|119871742|ref|YP_929749.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Pyrobaculum islandicum DSM 4184] gi|119673150|gb|ABL87406.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Pyrobaculum islandicum DSM 4184] Length = 239 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 20/107 (18%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCNL + A+ + C G +V++L + + Sbjct: 24 LCGCNLRCPFCHNWRIAERQNC------------GELDVERLLGELARAKPYIDYLH--- 68 Query: 89 VLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI--EPPQGIDWI 131 +TGGEPLLQ L + + G ++ TN T+ + ID + Sbjct: 69 -VTGGEPLLQAEELRHLFKRAREAGVARSLNTNATLTKALEKVIDEV 114 >gi|302335812|ref|YP_003801019.1| glycyl-radical enzyme activating protein family [Olsenella uli DSM 7084] gi|301319652|gb|ADK68139.1| glycyl-radical enzyme activating protein family [Olsenella uli DSM 7084] Length = 314 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 11/85 (12%) Query: 45 AQCRFCDTDFVGIQGTKGG------RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 C C+T G VD L +++ +G TGGEPL+Q Sbjct: 89 KACLECETIECVNSCAAGALKQPVREMTVDGLLGVLDRDRSNWGSDGG-VTFTGGEPLMQ 147 Query: 99 VDVPLIQALN---KRGFEIAVETNG 120 D L++ L K A+ET+G Sbjct: 148 SDF-LVEVLKGCRKTWIHTAIETSG 171 >gi|292670532|ref|ZP_06603958.1| molybdenum cofactor biosynthesis protein A [Selenomonas noxia ATCC 43541] gi|292647821|gb|EFF65793.1| molybdenum cofactor biosynthesis protein A [Selenomonas noxia ATCC 43541] Length = 331 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 26/114 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +CR+C + G K +V +++ E R L Sbjct: 20 CNL-----------RCRYC----MPAHGVKKLAHADVLSYEEILRNVRALAEMGVRKVRL 64 Query: 91 TGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134 TGGEPL++ D+ L++ L + G E +AV TNG + G+D + +S Sbjct: 65 TGGEPLVRRDITRLVRGLKETPGIETVAVTTNGVLLGTMLDELIDAGLDAVNLS 118 >gi|270261850|ref|ZP_06190122.1| coenzyme PQQ synthesis protein E [Serratia odorifera 4Rx13] gi|270043726|gb|EFA16818.1| coenzyme PQQ synthesis protein E [Serratia odorifera 4Rx13] Length = 379 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF + +Q D+ + G + + Sbjct: 13 PLWLLAELTYRCPLQCPYCSNPLDFAAQE----QELTTEQWIDVFRQARAMGSVQLGF-- 66 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL++ D+P LI A GF + T+G Sbjct: 67 -SGGEPLVRKDLPELIAAARDLGFYTNLITSG 97 >gi|291617410|ref|YP_003520152.1| PqqE [Pantoea ananatis LMG 20103] gi|291152440|gb|ADD77024.1| PqqE [Pantoea ananatis LMG 20103] Length = 380 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF + + +Q D+ + G + + Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFAQQEKE----LSTEQWIDVFRQARAMGSVQLGF-- 64 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL + D+P LI+A GF + T+G Sbjct: 65 -SGGEPLTRKDLPDLIKAARDLGFYTNLITSG 95 >gi|227120433|gb|ACP19314.1| PqqE [Rahnella aquatilis] Length = 396 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 11/101 (10%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF Q + EE G + Sbjct: 30 PLWLLAELTYRCPLQCPYCSNPLDFAKQDKE----LTTAQWIKVFEEAREMGAVQ---IG 82 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGID 129 +GGEPL++ D+P LI+A GF + T+G + ID Sbjct: 83 FSGGEPLVRKDLPELIRAARDLGFYTNLITSGIGLTEKKID 123 >gi|55378148|ref|YP_135998.1| heme biosynthesis protein [Haloarcula marismortui ATCC 43049] gi|55230873|gb|AAV46292.1| heme biosynthesis protein [Haloarcula marismortui ATCC 43049] Length = 411 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL+ DT+ + T G+ +D LAD + Sbjct: 49 CNLYCDHCYAAA-------DTEIADGELSTAEGKALLDDLAD----------YGAPVVLF 91 Query: 91 TGGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122 +GGEPL+ Q L+ N+ G + TNGT+ Sbjct: 92 SGGEPLVRQDLEELVAYANEVGVRPVLSTNGTL 124 >gi|325275293|ref|ZP_08141246.1| radical SAM family protein [Pseudomonas sp. TJI-51] gi|324099541|gb|EGB97434.1| radical SAM family protein [Pseudomonas sp. TJI-51] Length = 445 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 33/122 (27%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL- 90 CNL C +C D G + R ++ G R + Sbjct: 89 CNL-----------ACAYCYADRGSFGGKQVERMQYATAISAVDRLL-NGADPARPVTIG 136 Query: 91 -TGGEPLLQVDVPLI--------QALNKRGFEI--AVETNGTIEPPQGIDW-------IC 132 GGEPLL + L+ +A KRG ++ ++ TNGTI ID + Sbjct: 137 FLGGEPLL--NRELVHNVVEYASRAGVKRGIDVRFSITTNGTILSQADIDLMRTHRFAVT 194 Query: 133 VS 134 +S Sbjct: 195 IS 196 >gi|320355186|ref|YP_004196525.1| Radical SAM domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320123688|gb|ADW19234.1| Radical SAM domain protein [Desulfobulbus propionicus DSM 2032] Length = 351 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 31/138 (22%) Query: 33 NLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 N R + +CR+C DT G +++ + Sbjct: 16 NYLILALTTRCNLRCRYCYHGDTP----GRQDMGSATLERAFARAAS-----GSGPLHIQ 66 Query: 90 LTGGEPLLQVDVPLIQALNK------RGFEIAVETNGTIEPPQGIDW---------ICV- 133 LTGGEP L D LI+ + R + + +++NGT P+ I+ I + Sbjct: 67 LTGGEPCLVPD--LIEEACERARSLSRPYTMGLQSNGTCLTPEVIELCRTFGLQVGISLD 124 Query: 134 -SPKAGCDLKIKGGQELK 150 SPK L+ + + L+ Sbjct: 125 GSPKTQQSLRGQAAETLR 142 >gi|312963443|ref|ZP_07777925.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas fluorescens WH6] gi|311282249|gb|EFQ60848.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas fluorescens WH6] Length = 383 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 12/101 (11%) Query: 22 RVAVFCRFSGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 + A+ G LW E R QC +C +G + +Q + E Sbjct: 11 KPAI-----GLPLWLLAELTYRCPLQCPYCSNPLDF--AEQGKELSTEQWIKVFREAREM 63 Query: 81 GEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 G + + +GGEPL+ Q LI K GF + T+G Sbjct: 64 GAAQLGF---SGGEPLVRQDLAELIAEARKLGFYTNLITSG 101 >gi|167837373|ref|ZP_02464256.1| molybdenum cofactor biosynthesis protein A [Burkholderia thailandensis MSMB43] Length = 370 Score = 43.5 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 23/113 (20%) Query: 41 DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 DR + +C +C ++++ L G ++ R +TGGEP Sbjct: 45 DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 100 Query: 96 LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 LL+ ++ LI+ L K R +I + TNG++ G+ + VS Sbjct: 101 LLRKNIEFLIERLAKMTTAGGRPLDITLTTNGSLLVRKAKSLRDAGLSRVTVS 153 >gi|322835536|ref|YP_004215562.1| coenzyme PQQ biosynthesis protein E [Rahnella sp. Y9602] gi|321170737|gb|ADW76435.1| coenzyme PQQ biosynthesis protein E [Rahnella sp. Y9602] Length = 377 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 7/99 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C + K Q + EE G + + Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFAKQEK--ELTTAQWIKVFEEAREMGAVQ---IGFS 65 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGID 129 GGEPL++ D+P LI+A GF + T+G + ID Sbjct: 66 GGEPLVRKDLPELIRAARDLGFYTNLITSGIGLTEKKID 104 >gi|299142548|ref|ZP_07035679.1| pyruvate formate-lyase 1-activating enzyme [Prevotella oris C735] gi|298575983|gb|EFI47858.1| pyruvate formate-lyase 1-activating enzyme [Prevotella oris C735] Length = 242 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 34/121 (28%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F ++ G G RF GC + +C FC DT + Sbjct: 8 ESFGSVDGPG---------IRFLIFLQGCPM-----------RCLFCHNPDT----WKQD 43 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 K D+L + E++ + E ++GGE LLQ+D + L + + R ++T Sbjct: 44 KTRPMTADELLNQ-AEKYRSYWGEKGGITVSGGEALLQIDFLIELFEKAHARSINTCLDT 102 Query: 119 N 119 + Sbjct: 103 S 103 >gi|167768527|ref|ZP_02440580.1| hypothetical protein CLOSS21_03086 [Clostridium sp. SS2/1] gi|167710051|gb|EDS20630.1| hypothetical protein CLOSS21_03086 [Clostridium sp. SS2/1] gi|291560491|emb|CBL39291.1| Predicted Fe-S oxidoreductases [butyrate-producing bacterium SSC/2] Length = 366 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 3/87 (3%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104 C C + + GR + + I+ + + +LTGGEPLL L Sbjct: 38 NCDMCYVRLSNAEMEQKGRLRTKE--EWIKLAHQMKDAGTLFLLLTGGEPLLFPGFKELY 95 Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWI 131 L K G + + TNGT+ + D+ Sbjct: 96 IELQKMGMILTINTNGTLIDEEWADFF 122 >gi|229581698|ref|YP_002840097.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus Y.N.15.51] gi|259495871|sp|C3NGB5|MOAA_SULIN RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|228012414|gb|ACP48175.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus Y.N.15.51] Length = 308 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 15/98 (15%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104 +C FC ++G +G Y + D++ + + LTGGEP L+ D+ ++ Sbjct: 23 ECFFC-----HMEGEEGDNY-ILSKEDILLVAKVAKNFDINSVKLTGGEPTLRRDLVEIV 76 Query: 105 QALNKRGFE-IAVETNGTIEPP-------QGIDWICVS 134 + L + G+ +++ TNG + G+D I VS Sbjct: 77 RGLKQLGYRDVSMTTNGLLLKDLAYKLKLAGLDRINVS 114 >gi|89093841|ref|ZP_01166787.1| hypothetical protein MED92_05064 [Oceanospirillum sp. MED92] gi|89081971|gb|EAR61197.1| hypothetical protein MED92_05064 [Oceanospirillum sp. MED92] Length = 476 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 41/135 (30%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GCNL C +C D D + + G + ++ IE +E R Sbjct: 110 TGCNL-----------SCSYCYKEDLD----KPSAGKKMGLETAIQSIEMLIAESPQEER 154 Query: 87 Y-CVLTGGEPLLQVDVPLI--------QALNKRGFEI--AVETNGTIEPPQGIDW----- 130 Y V GGEPL ++ LI + + G + + TN T+ + +DW Sbjct: 155 YNVVFFGGEPL--SNLALIREVVDYSERRFAELGKPVDFTMTTNATLLTEEIVDWLNEHR 212 Query: 131 --ICVS---PKAGCD 140 I +S PKA D Sbjct: 213 FGISISMDGPKAIHD 227 >gi|327482153|gb|AEA85463.1| radical-activating enzyme [Pseudomonas stutzeri DSM 4166] Length = 231 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 11/111 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 +L +CR+C + I ++ +E++ E V +G Sbjct: 21 HLACVLFCQGCGWRCRYCHNPQL-IPACGNEERPWSEILAFLEQRVGLLEA----VVFSG 75 Query: 93 GEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKA 137 GEP LQ +P I + G+++ + + G +DW+ KA Sbjct: 76 GEPTLQTALPEAIAQVRALGYKVGLHSAGIKPKLFAGILPLVDWVGFDVKA 126 >gi|254489978|ref|ZP_05103173.1| molybdenum cofactor biosynthesis protein A [Methylophaga thiooxidans DMS010] gi|224465063|gb|EEF81317.1| molybdenum cofactor biosynthesis protein A [Methylophaga thiooxydans DMS010] Length = 335 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 26/166 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C + + T R + L +++ E +TGGEPL++ + Sbjct: 25 DRCDFRCVYC----MDEEMTFMPREQLLTLEEIVFLMRAFCELGVEKVRITGGEPLIRRN 80 Query: 101 VP-LIQALNKRGFEIAV-E----TNGTIEP-------PQGIDWICV---SPKAGCDLKIK 144 V L + + + + A+ E TNG+ P G+D I + S KA + Sbjct: 81 VDWLFEQIGQLKHDTALNELTLTTNGSQLPKHAEALVKAGVDRINISLDSLKADKFKALT 140 Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQP--MDGPFLEENTNLA 188 EL+ V ++ + + F+R L M G +E +LA Sbjct: 141 RTGELEQVLAGIDAAKQA----GFKRIKLNAVIMKGRNEDEIIDLA 182 >gi|206559374|ref|YP_002230135.1| molybdenum cofactor biosynthesis protein A [Burkholderia cenocepacia J2315] gi|206561224|ref|YP_002231989.1| molybdenum cofactor biosynthesis protein A [Burkholderia cenocepacia J2315] gi|198035412|emb|CAR51288.1| molybdenum cofactor biosynthesis protein A 2 [Burkholderia cenocepacia J2315] gi|198037266|emb|CAR53188.1| molybdenum cofactor biosynthesis protein A 1 [Burkholderia cenocepacia J2315] Length = 370 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 25/114 (21%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + +++ + + ++ E +TGGE Sbjct: 45 DRCNFRCVYCMPRAVFDKDYPFLPHS--ALLTHEEI-ERVARLFVAHGVEK--IRITGGE 99 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 PLL+ ++ LI+ L + R ++ + TNG++ G+ + VS Sbjct: 100 PLLRKNLEFLIERLARLTTHAGRPLDLTLTTNGSLLARKARALKDAGLTRVTVS 153 >gi|297190549|ref|ZP_06907947.1| radical SAM domain-containing protein [Streptomyces pristinaespiralis ATCC 25486] gi|197717862|gb|EDY61770.1| radical SAM domain-containing protein [Streptomyces pristinaespiralis ATCC 25486] Length = 339 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 38 CNLAC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + +++ L R + + TN + + I+ SP + I G +E Sbjct: 80 GGEPLMHPQIDEIVRQLVARRKYVFLCTN-AVLLRKKIEKFTPSPYFAFAVHIDGLRE 136 >gi|162454968|ref|YP_001617335.1| hypothetical protein sce6686 [Sorangium cellulosum 'So ce 56'] gi|161165550|emb|CAN96855.1| hypothetical protein sce6686 [Sorangium cellulosum 'So ce 56'] Length = 362 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 6/90 (6%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 +W R C +C D+ G + V+QL +++E G LT Sbjct: 34 PIWVDVCVTNRCHLSCEYCYGDYHHRHDDIG-QLKVEQLFAIVDEAAALGTA---VLTLT 89 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 GGEP+L + +++ RG + + T+G Sbjct: 90 GGEPMLHKSIGRIVERAVSRGISVGMVTSG 119 >gi|153932625|ref|YP_001383439.1| radical SAM domain-containing protein [Clostridium botulinum A str. ATCC 19397] gi|153935283|ref|YP_001386986.1| radical SAM domain-containing protein [Clostridium botulinum A str. Hall] gi|152928669|gb|ABS34169.1| radical SAM domain protein [Clostridium botulinum A str. ATCC 19397] gi|152931197|gb|ABS36696.1| radical SAM domain protein [Clostridium botulinum A str. Hall] Length = 297 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 20/92 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC K +++ ++++ + + Sbjct: 20 CNL-----------ACDFC-----PETRRKPQFMSIEIFDKILDQIKPYTDYIYFHVK-- 61 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL D+ + K+GF++ + TNGT+ Sbjct: 62 -GEPLLHPDIDKFLDLSYKKGFKVNITTNGTL 92 >gi|148379057|ref|YP_001253598.1| radical SAM domain protein [Clostridium botulinum A str. ATCC 3502] gi|148288541|emb|CAL82621.1| putative cofactor modifying protein [Clostridium botulinum A str. ATCC 3502] Length = 292 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 20/92 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC K +++ ++++ + + Sbjct: 15 CNL-----------ACDFC-----PETRRKPQFMSIEIFDKILDQIKPYTDYIYFHVK-- 56 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL D+ + K+GF++ + TNGT+ Sbjct: 57 -GEPLLHPDIDKFLDLSYKKGFKVNITTNGTL 87 >gi|170732420|ref|YP_001764367.1| molybdenum cofactor biosynthesis protein A [Burkholderia cenocepacia MC0-3] gi|254245935|ref|ZP_04939256.1| Radical SAM:Molybdenum cofactor synthesis C [Burkholderia cenocepacia PC184] gi|124870711|gb|EAY62427.1| Radical SAM:Molybdenum cofactor synthesis C [Burkholderia cenocepacia PC184] gi|169815662|gb|ACA90245.1| molybdenum cofactor biosynthesis protein A [Burkholderia cenocepacia MC0-3] Length = 370 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 25/114 (21%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + +++ + + ++ E +TGGE Sbjct: 45 DRCNFRCVYCMPRAVFDKDYPFLPHS--ALLTHEEI-ERVARLFVAHGVEK--IRITGGE 99 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 PLL+ ++ LI+ L + R ++ + TNG++ G+ + VS Sbjct: 100 PLLRKNLEFLIERLARLTTHAGRPLDLTLTTNGSLLARKARALKDAGLTRVTVS 153 >gi|107022186|ref|YP_620513.1| molybdenum cofactor biosynthesis protein A [Burkholderia cenocepacia AU 1054] gi|116689132|ref|YP_834755.1| molybdenum cofactor biosynthesis protein A [Burkholderia cenocepacia HI2424] gi|105892375|gb|ABF75540.1| GTP cyclohydrolase subunit MoaA [Burkholderia cenocepacia AU 1054] gi|116647221|gb|ABK07862.1| GTP cyclohydrolase subunit MoaA [Burkholderia cenocepacia HI2424] Length = 370 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 25/114 (21%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + +++ + + ++ E +TGGE Sbjct: 45 DRCNFRCVYCMPRAVFDKDYPFLPHS--ALLTHEEI-ERVARLFVAHGVEK--IRITGGE 99 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 PLL+ ++ LI+ L + R ++ + TNG++ G+ + VS Sbjct: 100 PLLRKNLEFLIERLARLTTHAGRPLDLTLTTNGSLLARKARALKDAGLTRVTVS 153 >gi|296161447|ref|ZP_06844253.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. Ch1-1] gi|295888262|gb|EFG68074.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. Ch1-1] Length = 410 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 19/135 (14%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVL 90 LW E R C FC + + T R + +Q ++ E G + + Sbjct: 23 PLWLLAELTYRCPLHCAFC---YNPVDYTDHSRELSTEQWIGVLREARALGAAQLGF--- 76 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 +GGEPL++ D+ L+ K GF + T+G + ++ K DLK G + Sbjct: 77 SGGEPLVRDDLEVLVGEARKLGFYTNLITSG----------VGLTDKRLGDLKAAGLDHI 126 Query: 150 KLVFPQVNVSPENYI 164 +L F +++ Sbjct: 127 QLSFQDSTQELNDFL 141 >gi|239996864|ref|ZP_04717388.1| pyrroloquinoline quinone biosynthesis protein PqqE [Alteromonas macleodii ATCC 27126] Length = 386 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 20/165 (12%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E + C +C ++ V ++ T + + ++ E G + + + Sbjct: 20 PLWLLAEITYQCPLHCPYC-SNPVNMEET-FNELSTEHWERVLREAREVGAVQLGF---S 74 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 GGEPLL+ D+ L+ GF + T+G I ++ K LK G ++ Sbjct: 75 GGEPLLRKDLEHLVAYARALGFYTNLITSG----------IGMTEKRIAKLKEAGLDHIQ 124 Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFL--EENTNLAISYCF 193 L F N + IG + Q + L + N + +++C Sbjct: 125 LSFQAANAEVNDLIG-NKRHSFEQKLKIAKLVKQYNYPMVLNFCI 168 >gi|222100725|ref|YP_002535293.1| AstB/chuR-related protein [Thermotoga neapolitana DSM 4359] gi|221573115|gb|ACM23927.1| AstB/chuR-related protein [Thermotoga neapolitana DSM 4359] Length = 323 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 67/183 (36%), Gaps = 35/183 (19%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99 R + +C+ C + + +++ +L+ + G GGEPLL Sbjct: 14 TRCNFRCKHC---YCEAGEPHPNELSFEEIKELMIDLRELGVWALDLV---GGEPLLHPH 67 Query: 100 DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159 + ++ + G + + TNG++ + + I K + G + + Sbjct: 68 LLDILAFGREIGQRLMINTNGSLATREMVRKI----KRANPDVLIG-----VSLEGPDPE 118 Query: 160 PENYIG--FDFERFSLQPMDG--PFLEENTNLAISYCFQNPKWR-------LSVQTHKFI 208 +Y+ +FER ++G F+ E + I WR LS+ K + Sbjct: 119 TNDYVRGNGNFERA----IEGIKNFISEGFQVTILNVINRMNWRKFEDMVKLSL---K-L 170 Query: 209 GIR 211 G+R Sbjct: 171 GVR 173 >gi|120556040|ref|YP_960391.1| radical SAM domain-containing protein [Marinobacter aquaeolei VT8] gi|120325889|gb|ABM20204.1| Radical SAM domain protein [Marinobacter aquaeolei VT8] Length = 404 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 25/112 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + D DF G ++ ++++ G +L+ Sbjct: 41 CNLTCKHCYSISA------DIDF-------KGELTTQEVYKVMDDLKAFG---VPVLILS 84 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGI--------DWICVS 134 GGEPL++ D+ + GF + + TNGT+ I D++ +S Sbjct: 85 GGEPLMRPDIFDISHRAKAMGFYVGLSTNGTLITEDNISKIAEVGYDYVGIS 136 >gi|126465976|ref|YP_001041085.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Staphylothermus marinus F1] gi|126014799|gb|ABN70177.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Staphylothermus marinus F1] Length = 267 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 39/195 (20%) Query: 29 FSGCNLWSGREQDR-----LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 GCNL + + CR+ D +++L + +E I + Sbjct: 41 LCGCNLKCPFCHNWMLAINHPSTCRYLD---------------INKLIEELESARILIDY 85 Query: 84 EGRYCVLTGGEPLLQ-VDVPLIQALNKR--GFEIAVETNGTIEPPQG-------IDWICV 133 +TGGEPL+Q ++ I +L K G I++ TN T+ P +D + Sbjct: 86 LH----VTGGEPLIQYRELEKILSLAKNNIGVNISINTNFTLYKPLKHLIDSGIVDHLAT 141 Query: 134 SPKAGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 K DL +E+ KL + + E + + ++ ++ + A Sbjct: 142 DLKIPYDLLYGHSKEVADTLWKLFIKSLALVSEYNVPLELRIPVMKNINIKIFRKYLAEA 201 Query: 189 ISYCFQNPKWRLSVQ 203 + ++ + + +Q Sbjct: 202 LDKLDKHNNYYVIIQ 216 >gi|134300585|ref|YP_001114081.1| glycyl-radical activating family protein [Desulfotomaculum reducens MI-1] gi|134053285|gb|ABO51256.1| glycyl-radical enzyme activating protein family [Desulfotomaculum reducens MI-1] Length = 310 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 6/99 (6%) Query: 39 EQDRLSAQCRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 + +C C TD + G VD++ +L+E+ + G L+GGE Sbjct: 89 KITVDRERCTNCGKCTDICPSKALNMYGELKRVDEVIELVEQDSSFYMRSGGGITLSGGE 148 Query: 95 PLLQVDVPL--IQALNKRGFEIAVETNGTIEPPQGIDWI 131 PL+Q + L ++ +R A+ET G + + + Sbjct: 149 PLVQAEFALEVLKEAKRRRLNTAIETCGYADWEKAVTVF 187 >gi|306819962|ref|ZP_07453613.1| pyruvate formate-lyase activating enzyme [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551998|gb|EFM39938.1| pyruvate formate-lyase activating enzyme [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 305 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 19/152 (12%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 KG V+++ + I + L+GGE L+Q + L +A +G+ A+ET Sbjct: 107 KGKTMTVEEVIKEARKDSIQYYRSDGGITLSGGEALVQGEFAKELFKACKAQGWHTAIET 166 Query: 119 NG------TIEPPQGIDWI-----CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD 167 G + +D + V+PK + G + + + + E I Sbjct: 167 EGYTNEEVIRDVMPYVDLVMLDIKSVNPKKHVEF---TGVDNETILKNAKIIQE--ITNT 221 Query: 168 FERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199 R + P EE T+ I + P + Sbjct: 222 VIRIPVIPEFNASREEITD-IIKFVKTLPNVK 252 >gi|226945603|ref|YP_002800676.1| molybdenum cofactor biosynthesis protein [Azotobacter vinelandii DJ] gi|226720530|gb|ACO79701.1| Molybdenum cofactor biosynthesis protein [Azotobacter vinelandii DJ] Length = 287 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 16/118 (13%) Query: 90 LTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG---TIEPP----QGIDWICVS---PKA 137 +TGGEPL+ + L + GF ++++ TNG + + P GI+ I VS A Sbjct: 30 ITGGEPLISPLFDGFMAELGRLGFADVSLTTNGQLLSRKLPVLLAAGIERINVSLDTLDA 89 Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 G +I G +L V ++ + + + ++ P+ G E+ L + YC Sbjct: 90 GALRRIARGGDLAEVLEGIDQALAAGVRV---KINMVPLRGHNREQVLPL-LEYCLAR 143 >gi|229917634|ref|YP_002886280.1| molybdenum cofactor biosynthesis protein A [Exiguobacterium sp. AT1b] gi|229469063|gb|ACQ70835.1| molybdenum cofactor biosynthesis protein A [Exiguobacterium sp. AT1b] Length = 335 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 16/107 (14%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D+ + +CR+C + R + ++ I + LTGGEPLL+ + Sbjct: 21 DKCNFRCRYCMPEEAFRHHQFLKRDELLSFDEIERFVRIIAPHGVKKVRLTGGEPLLRPN 80 Query: 101 V-PLIQALNKRGFEIAVE-----TNGT-------IEPPQGIDWICVS 134 + LI+ L +E TNG + G+D + VS Sbjct: 81 LDELIRRLRAV---TTIETIGLTTNGVYLERMAKVLKQAGLDRVNVS 124 >gi|146307788|ref|YP_001188253.1| molybdenum cofactor biosynthesis protein A [Pseudomonas mendocina ymp] gi|166217888|sp|A4XW05|MOAA_PSEMY RecName: Full=Molybdenum cofactor biosynthesis protein A gi|145575989|gb|ABP85521.1| GTP cyclohydrolase subunit MoaA [Pseudomonas mendocina ymp] Length = 331 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 13/87 (14%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F Q ++++L + + G + R +TGGEPL+ Sbjct: 23 DRCDFRCTYCMSEDMQFAPRQ----QILSLEELYAVADAFIGLGVRRIR---ITGGEPLV 75 Query: 98 -QVDVPLIQALNKRGF--EIAVETNGT 121 + + L+Q L +R ++A+ TNG+ Sbjct: 76 RKNLLSLLQRLGERDELDDLAITTNGS 102 >gi|83591400|ref|YP_425152.1| radical SAM family protein [Rhodospirillum rubrum ATCC 11170] gi|83574314|gb|ABC20865.1| Radical SAM [Rhodospirillum rubrum ATCC 11170] Length = 387 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 6/98 (6%) Query: 77 QWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP 135 + E + GGEPLL D+ P+++ L R + + TN + + +D SP Sbjct: 65 LGASDECGAPIVSIAGGEPLLHRDIVPIVEGLTARKRFVYLCTN-ALLLKKRMDDFKPSP 123 Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173 + + G +E VS E E L Sbjct: 124 YLTFSIHLDGDRE----HHDKAVSQEGVFDKAVEAIKL 157 >gi|148265581|ref|YP_001232287.1| radical SAM domain-containing protein [Geobacter uraniireducens Rf4] gi|146399081|gb|ABQ27714.1| Radical SAM domain protein [Geobacter uraniireducens Rf4] Length = 347 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C G + + DL+E+ G + Sbjct: 24 CNL-----------RCTHC---LSSSGEPAAGELSTAEALDLVEQVHQAGVFQ---INFG 66 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GGEP L+ D ++ A + RG + TNGT+ Sbjct: 67 GGEPFLRPDFEEILVACHGRGIMTCISTNGTL 98 >gi|172057088|ref|YP_001813548.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Exiguobacterium sibiricum 255-15] gi|171989609|gb|ACB60531.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Exiguobacterium sibiricum 255-15] Length = 152 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 30/97 (30%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F+GC C C D+ G +V+Q+ + I++ Sbjct: 21 VF--FAGCP-----------HHCPGCHNPDS----WAVEGGEDCSVEQVIEQIQQMG--- 60 Query: 82 EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAV 116 ++GGEP LQ L+ AL G++I + Sbjct: 61 ---SYRVTISGGEPFLQQQALSELVHAL--TGYDIYL 92 >gi|260893907|ref|YP_003240004.1| Radical SAM domain protein [Ammonifex degensii KC4] gi|260866048|gb|ACX53154.1| Radical SAM domain protein [Ammonifex degensii KC4] Length = 382 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +CR C + G G ++ I+ + E + Sbjct: 39 CNL-----------RCRHC---YASATPGPAPGEMTTEEARRFIQ---GLAKTEVPVLLF 81 Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +GGEPLL+ D L+ G + TNGT+ Sbjct: 82 SGGEPLLRPDFFELVNYARSLGLRPVISTNGTL 114 >gi|262044465|ref|ZP_06017524.1| coenzyme PQQ synthesis protein E [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038195|gb|EEW39407.1| coenzyme PQQ synthesis protein E [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 380 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF +Q ++ + G + + Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFARQDKE----LTTEQWIEVFRQARAMGSVQLGF-- 64 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL + D+P LI+A GF + T+G Sbjct: 65 -SGGEPLTRKDLPELIRAARDLGFYTNLITSG 95 >gi|90962847|ref|YP_536762.1| pyruvate formate-lyase activating enzyme [Lactobacillus salivarius UCC118] gi|90822041|gb|ABE00679.1| Pyruvate formate-lyase activating enzyme [Lactobacillus salivarius UCC118] Length = 278 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 39/154 (25%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC++ +C+FC DT + G + +++ + + Sbjct: 35 IRFVAFMQGCHM-----------RCKFCHNPDT----WKTRVGSQMTTEEVLNK-ALPYR 78 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG---TIEPP------QGI 128 + + L+GGE LLQ+D + L + + G ++T G T P + + Sbjct: 79 SFWGDKGGITLSGGEILLQIDFALELFKMCKEEGISTCLDTCGQPFTRREPWFSKFNELM 138 Query: 129 DWICVSPKAGCDLKIKGGQELKLV--FPQVNVSP 160 D+ + D+K E K + FP N+ Sbjct: 139 DYTDI---LLVDIKHINSDEHKRLTGFPNDNILD 169 >gi|48478258|ref|YP_023964.1| molybdenum cofactor biosynthesis protein A [Picrophilus torridus DSM 9790] gi|48430906|gb|AAT43771.1| molybdenum cofactor biosynthesis protein A [Picrophilus torridus DSM 9790] Length = 611 Score = 43.5 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 5/100 (5%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L + +R C +C F + ++DQ+ ++ +TGG Sbjct: 149 LGNIVVTNRCDLSCWYC--FFYAKENEPIYEPSLDQIRMMLRRMRNEKPVGANAVQITGG 206 Query: 94 EPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWI 131 EP ++ D + +I+ + G+ + + TN +I D++ Sbjct: 207 EPTMRDDILEVIKIAREEGYDHVQLNTN-SIREAYDPDFV 245 >gi|327311169|ref|YP_004338066.1| Radical SAM domain-containing protein [Thermoproteus uzoniensis 768-20] gi|326947648|gb|AEA12754.1| Radical SAM domain protein [Thermoproteus uzoniensis 768-20] Length = 381 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 15/111 (13%) Query: 17 GGH-AGRVAVF---CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72 G + GR + F R + R + +C C +V G + D Sbjct: 20 GRYGVGRPSDFAAPLR----PAVTWNITRRCNLKCLHC---YVDAGPRDPGELTTQEAMD 72 Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 ++++ E + +GGEPLL+ D+ + +G ++ + TNGT+ Sbjct: 73 VVDQM---AEVGVPMVIFSGGEPLLREDLFDVAAYAGSKGIKLVLSTNGTL 120 >gi|317048015|ref|YP_004115663.1| coenzyme PQQ biosynthesis protein E [Pantoea sp. At-9b] gi|316949632|gb|ADU69107.1| coenzyme PQQ biosynthesis protein E [Pantoea sp. At-9b] Length = 380 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF + +Q ++ + G + + Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFAQQEKE----LTTEQWIEVFRQARAMGSVQLGF-- 64 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL + D+P LI+A GF + T+G Sbjct: 65 -SGGEPLTRKDLPELIKAARDLGFYTNLITSG 95 >gi|229592978|ref|YP_002875097.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas fluorescens SBW25] gi|229364844|emb|CAY52889.1| coenzyme PQQ synthesis protein E [Pseudomonas fluorescens SBW25] Length = 376 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 12/101 (11%) Query: 22 RVAVFCRFSGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 + A+ G LW E R QC +C +G + +Q + E Sbjct: 4 KPAI-----GLPLWLLAELTYRCPLQCPYCSNPLDF--AEQGKELSTEQWIKVFREAREM 56 Query: 81 GEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 G + + +GGEPL+ Q LI K GF + T+G Sbjct: 57 GAAQLGF---SGGEPLVRQDLAELIAEARKLGFYTNLITSG 94 >gi|219852013|ref|YP_002466445.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c] gi|219546272|gb|ACL16722.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c] Length = 377 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 12/78 (15%) Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT--GGEPLLQVDV- 101 ++CR+CD+ + + D+ +I+E G LT GGEP ++ D+ Sbjct: 38 SRCRYCDS----WKNNGESEPDTDEWKKIIDELVNLG-----IVTLTFSGGEPFIRKDLF 88 Query: 102 PLIQALNKRGFEIAVETN 119 L RG V TN Sbjct: 89 ELASYAKSRGLITMVVTN 106 >gi|197118992|ref|YP_002139419.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase [Geobacter bemidjiensis Bem] gi|197088352|gb|ACH39623.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase [Geobacter bemidjiensis Bem] Length = 471 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 21/106 (19%) Query: 31 GCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 GC G D R + QC FC F ++++++ L+E Sbjct: 76 GCPFDCGLCSDHRQLPCSVLLEVTDRCNLQCAFC---FADAGPKGTEDPSLERISWLLER 132 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120 L+GGEP L+ D+P +++A + GF I V TNG Sbjct: 133 AMAAAGACSLQ--LSGGEPTLRDDLPEIVEAARRIGFSFIQVNTNG 176 >gi|118444335|ref|YP_877304.1| glycerol dehydratase activator [Clostridium novyi NT] gi|118134791|gb|ABK61835.1| glycerol dehydratase activator [Clostridium novyi NT] Length = 304 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 6/85 (7%) Query: 37 GREQDRLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 RE+ +C C T+ + + G +VD+ + +++ I + G L+GGE Sbjct: 83 DRERCIACGKCVEHCPTEALVM---SGESVSVDETIEKLKKDSIYYRRSGGGVTLSGGEA 139 Query: 96 LLQVD--VPLIQALNKRGFEIAVET 118 LLQ + V L++ G+ A+ET Sbjct: 140 LLQPEFAVELLKRCKALGWHTAIET 164 >gi|78065694|ref|YP_368463.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. 383] gi|77966439|gb|ABB07819.1| GTP cyclohydrolase subunit MoaA [Burkholderia sp. 383] Length = 370 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 25/114 (21%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + +++ + + ++ E +TGGE Sbjct: 45 DRCNFRCVYCMPRAVFDKDYPFLPHS--ALLTHEEI-ERVARLFVAHGVEK--IRITGGE 99 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 PLL+ ++ LI+ L + R ++ + TNG++ G+ + VS Sbjct: 100 PLLRKNLEFLIERLARLTTHDGRPIDLTLTTNGSLLARKARALKDAGLTRVTVS 153 >gi|327480689|gb|AEA83999.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas stutzeri DSM 4166] Length = 384 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 33/90 (36%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C ++ A+ IE E + Sbjct: 18 PLWLLAELTYRCPLQCPYC-----SNPLDFARSHDELSTAEWIEVFRQAREMGAAQLGFS 72 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q V LI A G+ + T+G Sbjct: 73 GGEPLVRQDLVELIAAARGLGYYTNLITSG 102 >gi|302555535|ref|ZP_07307877.1| radical SAM domain-containing protein [Streptomyces viridochromogenes DSM 40736] gi|302473153|gb|EFL36246.1| radical SAM domain-containing protein [Streptomyces viridochromogenes DSM 40736] Length = 340 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 38 CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + +++ L R + + TN + + +D SP + I G +E Sbjct: 80 GGEPLMHPQIDEIVRQLVARRKYVFLCTN-ALLLRKKMDQFRPSPYFAFAVHIDGLRE 136 >gi|228924202|ref|ZP_04087473.1| Radical SAM domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835420|gb|EEM80790.1| Radical SAM domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 259 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ A +++ + + GEPLL + L+ +++GF++ + TNGT+ Sbjct: 1 MEDFAKRLDQIKPHTDYIYLHVK---GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 54 >gi|228918070|ref|ZP_04081598.1| Radical SAM domain protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930464|ref|ZP_04093464.1| Radical SAM domain protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229159018|ref|ZP_04287074.1| Radical SAM domain protein [Bacillus cereus ATCC 4342] gi|229187687|ref|ZP_04314823.1| Radical SAM domain protein [Bacillus cereus BGSC 6E1] gi|228595755|gb|EEK53439.1| Radical SAM domain protein [Bacillus cereus BGSC 6E1] gi|228624437|gb|EEK81208.1| Radical SAM domain protein [Bacillus cereus ATCC 4342] gi|228829183|gb|EEM74820.1| Radical SAM domain protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841550|gb|EEM86666.1| Radical SAM domain protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 259 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ A +++ + + GEPLL + L+ +++GF++ + TNGT+ Sbjct: 1 MEDFAKRLDQIKPHTDYIYLHVK---GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 54 >gi|182417509|ref|ZP_02948836.1| glycerol dehydratase activator [Clostridium butyricum 5521] gi|237665695|ref|ZP_04525683.1| glycerol dehydratase activator [Clostridium butyricum E4 str. BoNT E BL5262] gi|158427703|gb|ABW38374.1| glycerol dehydratase activator [Clostridium sp. IBUN 13A] gi|161087403|gb|ABX56861.1| glycerol dehydratase activator [Clostridium sp. IBUN 158B] gi|161349953|gb|ABX65444.1| glycerol dehydratase activator [Clostridium butyricum] gi|182378678|gb|EDT76205.1| glycerol dehydratase activator [Clostridium butyricum 5521] gi|193200834|gb|ACF15539.1| glycerol dehydratase activator [Clostridium sp. IBUN 22A] gi|237658642|gb|EEP56194.1| glycerol dehydratase activator [Clostridium butyricum E4 str. BoNT E BL5262] Length = 304 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 6/86 (6%) Query: 39 EQDRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 E ++C C D G T+G Y+V+ + +++ + + L+GGE Sbjct: 78 EYRIDKSKCTECTKCVDNCLSGALVTEGRNYSVEDVIKELKKDSVQYRRSNGGITLSGGE 137 Query: 95 PLLQVD--VPLIQALNKRGFEIAVET 118 LLQ D V L++ G+ A+ET Sbjct: 138 VLLQPDFAVELLKECKSYGWHTAIET 163 >gi|117620324|ref|YP_857359.1| pyruvate formate-lyase 2-activating enzyme [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561731|gb|ABK38679.1| pyruvate formate-lyase 2-activating enzyme [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 298 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118 G ++D L I E+ G L+GGEP +Q + L+ G AVE+ Sbjct: 100 GREESLDTLMATILRDRPFFERSGGGVTLSGGEPFMQPEFAANLLARCKAEGLHTAVES 158 >gi|309776578|ref|ZP_07671558.1| putative pyruvate formate-lyase-activating enzyme [Erysipelotrichaceae bacterium 3_1_53] gi|308915679|gb|EFP61439.1| putative pyruvate formate-lyase-activating enzyme [Erysipelotrichaceae bacterium 3_1_53] Length = 304 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 52/154 (33%), Gaps = 53/154 (34%) Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLS--------------AQCRFC---------- 50 G+G VF F GC+L + S + C +C Sbjct: 17 GDGIRT---TVF--FKGCHLNCWWCHNPESQSYLPELMFNREKCSGCGYCLKACTHGAIT 71 Query: 51 -----------DT--------DFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCV 89 DT D+ + G Y++ +L +I + E+ G Sbjct: 72 IEENGIAHTDPDTCVLCSDCLDYCIHNNREIVGKTYSIKELMSIINKDAQFYEESGGGVT 131 Query: 90 LTGGEPLLQVDV---PLIQALNKRGFEIAVETNG 120 L+GGE + Q L + L +G+ IAV+T G Sbjct: 132 LSGGEVMTQDMEYLSELCRQLKDKGYNIAVDTCG 165 >gi|229094569|ref|ZP_04225636.1| Radical SAM domain protein [Bacillus cereus Rock3-42] gi|228688816|gb|EEL42647.1| Radical SAM domain protein [Bacillus cereus Rock3-42] Length = 259 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ A +++ + + GEPLL + L+ +++GF++ + TNGT+ Sbjct: 1 MEDFAKRLDQIKPHTDYIYLHVK---GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 54 >gi|228936738|ref|ZP_04099529.1| Radical SAM domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229142207|ref|ZP_04270731.1| Radical SAM domain protein [Bacillus cereus BDRD-ST26] gi|229199587|ref|ZP_04326248.1| Radical SAM domain protein [Bacillus cereus m1293] gi|228583992|gb|EEK42149.1| Radical SAM domain protein [Bacillus cereus m1293] gi|228641225|gb|EEK97532.1| Radical SAM domain protein [Bacillus cereus BDRD-ST26] gi|228822947|gb|EEM68788.1| Radical SAM domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 259 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ A +++ + + GEPLL + L+ +++GF++ + TNGT+ Sbjct: 1 MEDFAKRLDQIKPHTDYIYLHVK---GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 54 >gi|170287908|ref|YP_001738146.1| radical SAM domain-containing protein [Thermotoga sp. RQ2] gi|170175411|gb|ACB08463.1| Radical SAM domain protein [Thermotoga sp. RQ2] Length = 323 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 7/83 (8%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100 R + +C+ C + + +++ +LI + G GGEPLL Sbjct: 15 RCNFRCKHC---YCEAGKPHPEELSFEEIKELILDMKELGTWALDIV---GGEPLLHPQI 68 Query: 101 VPLIQALNKRGFEIAVETNGTIE 123 + ++ + G + + TNG++ Sbjct: 69 LDILAFGKEVGQRLMINTNGSLA 91 >gi|108801200|ref|YP_641397.1| radical SAM family protein [Mycobacterium sp. MCS] gi|119870351|ref|YP_940303.1| radical SAM domain-containing protein [Mycobacterium sp. KMS] gi|126437180|ref|YP_001072871.1| radical SAM domain-containing protein [Mycobacterium sp. JLS] gi|108771619|gb|ABG10341.1| Radical SAM [Mycobacterium sp. MCS] gi|119696440|gb|ABL93513.1| Radical SAM domain protein [Mycobacterium sp. KMS] gi|126236980|gb|ABO00381.1| Radical SAM domain protein [Mycobacterium sp. JLS] Length = 514 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 16/91 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C F V ++ ++++ +L+ Sbjct: 119 CNL-----------RCPTC---FTESSPDLRNVVPVAEVLANVDQRLRRENGRLDVVMLS 164 Query: 92 GGEPLLQV-DVPLIQALNKRGF-EIAVETNG 120 GGEP L L+ L R I V TNG Sbjct: 165 GGEPTLHPRLAELLTELVDRPITRILVNTNG 195 >gi|78358583|ref|YP_390032.1| Elongator protein 3/MiaB/NifB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220988|gb|ABB40337.1| Elongator protein 3/MiaB/NifB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 464 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 20/108 (18%) Query: 28 RFSGCNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73 R GC G R + CRFC F + ++ L L Sbjct: 74 RTKGCPFDCGLCPEHNQHTCTLLFEITSRCNLHCRFC---FASAGKSAPPDPDMAALRTL 130 Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-IAVETNG 120 ++ L+GGEP ++ D+P I + K F + + TNG Sbjct: 131 MDNARPRTGPC--NVQLSGGEPTMRDDLPQIIGMAKERFPFVQLNTNG 176 >gi|95930916|ref|ZP_01313646.1| Ribonucleoside-triphosphate reductase, anaerobic-like [Desulfuromonas acetoxidans DSM 684] gi|95133042|gb|EAT14711.1| Ribonucleoside-triphosphate reductase, anaerobic-like [Desulfuromonas acetoxidans DSM 684] Length = 195 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 26/119 (21%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 GC C +C + I + + Q+ I+++ + V Sbjct: 29 QGCP-----------WHCHYC-HNAALIPEQGQQQLDWQQVVAFIQQRRGLLDG----IV 72 Query: 90 LTGGEPLLQVDVPLIQALN---KRGFEIAVETNGTI-----EPPQGIDWICVSPKAGCD 140 +GGEP Q LI A++ + G ++A+ TNG DW+ + KA D Sbjct: 73 FSGGEPTAQ--TALIDAMHTVKELGMKVALHTNGAYSDRLRALLPLCDWVGMDLKAPFD 129 >gi|319650007|ref|ZP_08004156.1| molybdenum cofactor biosynthesis protein A [Bacillus sp. 2_A_57_CT2] gi|317398188|gb|EFV78877.1| molybdenum cofactor biosynthesis protein A [Bacillus sp. 2_A_57_CT2] Length = 338 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 18/100 (18%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C++C D F+ K + +++ L + G ++ R LTG Sbjct: 23 DRCNFRCQYCMPAEVFGPDFAFL----PKNELLSYEEIERLAKIFVSLGVEKIR---LTG 75 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPPQGID 129 GEPL++ D+P L++ L+ G + I + TNG + P D Sbjct: 76 GEPLMRKDMPKLVKMLSDIEGLKDIGLTTNGVLLPKHAKD 115 >gi|299144022|ref|ZP_07037102.1| radical SAM domain protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518507|gb|EFI42246.1| radical SAM domain protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 448 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 33/115 (28%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-----LADLIEEQWITGEKEGR 86 CNL +C++C F G R +D+ D I +G ++ Sbjct: 103 CNL-----------RCKYC---FASQGDFNGKRLLMDEETGKKALDFI--LKNSGNRKNL 146 Query: 87 YCVLTGGEPLLQVDVPLIQALNKRG----------FEIAVETNGTIEPPQGIDWI 131 GGEPL+ + L++ L G F + TNG + ID+I Sbjct: 147 EVDFFGGEPLM--NFELVKKLVDYGRNEEKKYNKHFRFTITTNGVLLRDDVIDYI 199 >gi|229164408|ref|ZP_04292337.1| Radical SAM domain protein [Bacillus cereus R309803] gi|228619058|gb|EEK75955.1| Radical SAM domain protein [Bacillus cereus R309803] Length = 259 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ A +++ + + GEPLL + L+ +++GF++ + TNGT+ Sbjct: 1 MEDFAKRLDQIKPHTDYIYLHVK---GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 54 >gi|159027366|emb|CAO90552.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 338 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 86 RYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144 + GGEPLL + +++ L R + + TN + + +D SP + + Sbjct: 74 PVVSIPGGEPLLHPQIDEIVKGLVDRKKFVYLCTN-ALLLEKSLDKFTPSPYLTFSVHLD 132 Query: 145 GGQE 148 G +E Sbjct: 133 GLKE 136 >gi|281411545|ref|YP_003345624.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10] gi|281372648|gb|ADA66210.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10] Length = 323 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 16/159 (10%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100 R + +C+ C + + +++ +LI + G GGEPLL Sbjct: 15 RCNFRCKHC---YCKAGKPHPEELSFEEIKELILDMKELGTWALDII---GGEPLLHPQI 68 Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP 160 + ++ + G + + TNG++ + + I K + G + L P+ + Sbjct: 69 LDILAFGKEVGQRLMINTNGSLATKEMVQKI----KKANPDVLVG---VSLEGPEPETND 121 Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199 +FER ++Q + F++E + I WR Sbjct: 122 FVRGIGNFER-AVQGIKN-FVDEGFQVTILNVINRRNWR 158 >gi|238761532|ref|ZP_04622507.1| pyruvate formate-lyase 3-activating enzyme [Yersinia kristensenii ATCC 33638] gi|238700046|gb|EEP92788.1| pyruvate formate-lyase 3-activating enzyme [Yersinia kristensenii ATCC 33638] Length = 299 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G ++D + + + G L+GGEP +Q +V L+Q ++ G AVE+ Sbjct: 101 GSPMDIDATMETLLRDLPFYRRSGGGVTLSGGEPFMQPEVAAELLQRCHQLGIHTAVES 159 >gi|210621095|ref|ZP_03292458.1| hypothetical protein CLOHIR_00401 [Clostridium hiranonis DSM 13275] gi|210154916|gb|EEA85922.1| hypothetical protein CLOHIR_00401 [Clostridium hiranonis DSM 13275] Length = 305 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 60/175 (34%), Gaps = 13/175 (7%) Query: 34 LWSGREQDRLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 W R + L +C C + G KG V+++ +++ I + L+G Sbjct: 82 YWVDRTKCTLCGECALVCPS---GALSMKGKEMTVEEVIKEVKKDDIQYYRSNGGVTLSG 138 Query: 93 GEPLLQVDV--PLIQALNKRGFEIAVETNGTI------EPPQGIDWICVSPKAGCDLKIK 144 GE L Q + +A +G+ A+ET G + + ID + + K+ K Sbjct: 139 GEALTQPAFAKEIFKACKAKGWHTAIETEGFVNEDVIRDVVPYIDLVLLDIKSISSEPHK 198 Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199 + I R + P EE T +A + P R Sbjct: 199 KFTGVDNEKIMKAAKLIQEITHTIIRVPVIPGFNANEEEITKIA-QFAGSLPNVR 252 >gi|161760543|ref|NP_908108.2| molybdenum cofactor biosynthesis protein A [Wolinella succinogenes DSM 1740] Length = 321 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 10/85 (11%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 +R + +C++C DT + + QL +L++ G K+ R +TGGEP+++ Sbjct: 19 NRCNFRCQYCMPDTPEDFFDAEED--IPLAQLLELVKVAIDEGVKKIR---ITGGEPMIR 73 Query: 99 VDVP-LIQA--LNKRGFEIAVETNG 120 D+ I L +IA+ TNG Sbjct: 74 KDLDWFIAQIYLYNPEIDIALTTNG 98 >gi|148243591|ref|YP_001228748.1| molybdenum cofactor biosynthesis protein [Synechococcus sp. RCC307] gi|147851901|emb|CAK29395.1| Molybdenum cofactor biosynthesis protein [Synechococcus sp. RCC307] Length = 350 Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 47/130 (36%), Gaps = 41/130 (31%) Query: 27 CRF---SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 R + CNL C +C G + R ++ Q LI G Sbjct: 18 LRLSLTARCNL-----------SCPYC-----QPDGGEDSRLSLHQRLQLIRACCELGLT 61 Query: 84 EGRYCVLTGGEPLLQVDVPLIQALNKRGF-----------EIAVETNGTI--------EP 124 R LTGGEPLL ++ + ++G E+A+ TNGT+ Sbjct: 62 TLR---LTGGEPLLAPELDELLLAIQQGRNSRHDPLQQLQEVALTTNGTLLNGCRAEQLK 118 Query: 125 PQGIDWICVS 134 G+D I +S Sbjct: 119 RAGLDRITIS 128 >gi|299822951|ref|ZP_07054837.1| pyruvate formate-lyase activating enzyme [Listeria grayi DSM 20601] gi|299816480|gb|EFI83718.1| pyruvate formate-lyase activating enzyme [Listeria grayi DSM 20601] Length = 246 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 62/181 (34%), Gaps = 41/181 (22%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C+FC DT +G KG + D + Sbjct: 22 IRFIVFMQGC-----------LLRCQFCHNPDTWKIG----KGTERTAQDVFDEAIKYKE 66 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKA 137 + G ++GGEPLLQVD + L + G +++ G C S Sbjct: 67 FWDASGGGITVSGGEPLLQVDFLIELFTLCKQAGVNTTIDSCGG----------CFSRDP 116 Query: 138 GCDLKIKGGQELK--LVFPQVNVSPENYIGFDFERFSLQPM---DGPFLEENTNLAISYC 192 K+ E+ ++ ++PE ++ + P+ E+N + I + Sbjct: 117 EFIEKLDRLMEVTDLILLDIKQINPEKHLKLTTRPNA--PILDFANYLKEKNQPIWIRHV 174 Query: 193 F 193 Sbjct: 175 L 175 >gi|229107173|ref|ZP_04237161.1| Radical SAM domain protein [Bacillus cereus Rock3-28] gi|228676275|gb|EEL31132.1| Radical SAM domain protein [Bacillus cereus Rock3-28] Length = 259 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ A +++ + + GEPLL + L+ +++GF++ + TNGT+ Sbjct: 1 MEDFAKRLDQIKPHTDYIYLHVK---GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 54 >gi|198283881|ref|YP_002220202.1| hopanoid biosynthesis associated radical SAM protein HpnH [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667007|ref|YP_002426516.1| radical SAM domain protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248402|gb|ACH83995.1| hopanoid biosynthesis associated radical SAM protein HpnH [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519220|gb|ACK79806.1| radical SAM domain protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 367 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 22/116 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ T R +V++ EE + Sbjct: 38 CNL-----------ACSGCGKIDY--PDETLDRRLSVEECIGAAEECG------APIVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 GGEPL+ D+P +++ L +R + + TN + + +D SP + + G Sbjct: 79 AGGEPLIHKDMPVVVEGLVERKRFVYLCTN-ALLLKKRMDDYRPSPYLTFSVHLDG 133 >gi|196036111|ref|ZP_03103511.1| conserved hypothetical protein [Bacillus cereus W] gi|228949180|ref|ZP_04111448.1| Radical SAM domain protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195991278|gb|EDX55246.1| conserved hypothetical protein [Bacillus cereus W] gi|228810463|gb|EEM56816.1| Radical SAM domain protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 259 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ A +++ + + GEPLL + L+ +++GF++ + TNGT+ Sbjct: 1 MEDFAKRLDQIKPHTDYIYLHVK---GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 54 >gi|284039241|ref|YP_003389171.1| radical SAM protein [Spirosoma linguale DSM 74] gi|283818534|gb|ADB40372.1| Radical SAM domain protein [Spirosoma linguale DSM 74] Length = 327 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 12/97 (12%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN + R +A C FCD + + + L + + R T Sbjct: 10 CNYYVTY---RCNASCGFCD---IWERPSPY-----VTLENARQNLRDLKRLGVRVVDFT 58 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQG 127 GGEPLL +P L++ G V TN + P Q Sbjct: 59 GGEPLLHRQLPELLREAKALGLITTVTTNALLYPKQA 95 >gi|152991324|ref|YP_001357046.1| molybdenum cofactor biosynthesis protein A [Nitratiruptor sp. SB155-2] gi|166217886|sp|A6Q5D0|MOAA_NITSB RecName: Full=Molybdenum cofactor biosynthesis protein A gi|151423185|dbj|BAF70689.1| molybdenum cofactor biosynthesis protein A [Nitratiruptor sp. SB155-2] Length = 322 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 67/170 (39%), Gaps = 24/170 (14%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 +R + +C++C + F + N + L ++ G + R LTGGEP L+ Sbjct: 19 ERCNFRCQYCMPEKPFSWVPKEN--LLNFEDLFKFVKAAIDEGITKIR---LTGGEPTLR 73 Query: 99 VDVP-LIQALNK--RGFEIAVETNGTIEPPQGIDW---------ICV-SPKAGCDLKIKG 145 D+ I+ + ++A+ TNG + D I + S K KI Sbjct: 74 ADLDKFIKMIYDYKPDIDLAMTTNGYLLKDIAQDLKKAGLKRLNISLDSLKPEVAAKIAS 133 Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 LK V ++ + E + + ++ P+ G +E + + YC Sbjct: 134 KDVLKNVLEGIDAALEAGLKV---KINMVPLKGVNEDEIVD-VMEYCKDR 179 >gi|83590095|ref|YP_430104.1| radical SAM family protein [Moorella thermoacetica ATCC 39073] gi|83573009|gb|ABC19561.1| Radical SAM [Moorella thermoacetica ATCC 39073] Length = 355 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +CR C + G G G + D +++ +L Sbjct: 10 CNL-----------KCRHC---YAGAGSGVAGDEMTTPEARDFLDQLVA---FRVPVLLL 52 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 +GGEPL++ D+ L+ K G + + TNGT+ Sbjct: 53 SGGEPLVRPDIFDLMATAVKGGLRVTLSTNGTL 85 >gi|34484012|emb|CAE11008.1| MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A [Wolinella succinogenes] Length = 363 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 10/85 (11%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 +R + +C++C DT + + QL +L++ G K+ R +TGGEP+++ Sbjct: 61 NRCNFRCQYCMPDTPEDFFDAEED--IPLAQLLELVKVAIDEGVKKIR---ITGGEPMIR 115 Query: 99 VDVP-LIQA--LNKRGFEIAVETNG 120 D+ I L +IA+ TNG Sbjct: 116 KDLDWFIAQIYLYNPEIDIALTTNG 140 >gi|27375649|ref|NP_767178.1| hypothetical protein blr0538 [Bradyrhizobium japonicum USDA 110] gi|27348786|dbj|BAC45803.1| blr0538 [Bradyrhizobium japonicum USDA 110] Length = 481 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 14/103 (13%) Query: 31 GCNLWSGREQDRLSAQCR-----------FCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G D C C F ++ + + + + Sbjct: 85 GCPYDCGLCPDHEQHSCLALIEITEHCNLTCPVCFA-ESAPARTKFTPLATVEKMLDALV 143 Query: 80 TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNG 120 E E ++GGEP L D ++ A+ R + + TNG Sbjct: 144 ASEGEPDLVQISGGEPTLHPDFFKILDAVRARPIRHVMINTNG 186 >gi|182701574|ref|ZP_02613151.2| radical SAM domain protein [Clostridium botulinum NCTC 2916] gi|182670554|gb|EDT82528.1| radical SAM domain protein [Clostridium botulinum NCTC 2916] Length = 297 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD-LIEEQWITGEKEGRYCVL 90 CNL C FC + + ++ ++ D ++++ + + Sbjct: 20 CNL-----------ACDFC------PETRRKPQFMPIEIFDKILDQIKPYTDYIYFHVK- 61 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL D+ + K+GF++ + TNGT+ Sbjct: 62 --GEPLLHPDIDKFLDLSYKKGFKVNITTNGTL 92 >gi|160937702|ref|ZP_02085062.1| hypothetical protein CLOBOL_02594 [Clostridium bolteae ATCC BAA-613] gi|158439347|gb|EDP17099.1| hypothetical protein CLOBOL_02594 [Clostridium bolteae ATCC BAA-613] Length = 230 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 2/79 (2%) Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRG 111 + + G +YN ++L I + G +GGEPL ++ + + +++RG Sbjct: 24 YADAREMMGRKYNEEELLTEILKDRQYYGMSGGGVTFSGGEPLYYSEIIGAVGEQMHRRG 83 Query: 112 FEIAVETNGTIEPPQGIDW 130 + VET G + D Sbjct: 84 YNTLVETCGHVPQKALEDI 102 >gi|157377180|ref|YP_001475780.1| radical SAM family Fe-S protein [Shewanella sediminis HAW-EB3] gi|157319554|gb|ABV38652.1| Fe-S protein, radical SAM family [Shewanella sediminis HAW-EB3] Length = 486 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 14/103 (13%) Query: 31 GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G D C C T + + ++Q+ +++ + Sbjct: 83 GCPYDCGICPDHEQHGCTVLVEVTDHCNLRCPTCYANSSPERQTHRGMEQVKAMLD-LAV 141 Query: 80 TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETNG 120 E E ++GGEP L D ++ +R + V TNG Sbjct: 142 KNEGEPNIVQISGGEPTLHPDFFTILDEAKERPIKHLLVNTNG 184 >gi|90422594|ref|YP_530964.1| pyruvate formate-lyase activating [Rhodopseudomonas palustris BisB18] gi|90104608|gb|ABD86645.1| Pyruvate formate-lyase activating [Rhodopseudomonas palustris BisB18] Length = 267 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 14/94 (14%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 +GC +C++C + D L D+ G Sbjct: 51 LAGC-----------LLRCQYCHNPDSWHMHHGKPSNSRDVLRDIAAYTKFLMHAHGG-V 98 Query: 89 VLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 L+GGEPL+Q D +++ + G A++T G Sbjct: 99 TLSGGEPLVQPDFTHAILRGCKEMGLHTALDTAG 132 >gi|325525113|gb|EGD03003.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. TJI49] Length = 355 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 25/114 (21%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + +++ + G ++ R +TGGE Sbjct: 45 DRCNFRCVYCMPRAVFDKDYPFLPHS--ALLTHEEIERVARIFVAHGVEKIR---ITGGE 99 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 PLL+ ++ LI+ L + R ++ + TNG++ G+ + VS Sbjct: 100 PLLRKNLEFLIERLARLTTRDGRPLDLTLTTNGSLLARKARALKDAGLTRVTVS 153 >gi|296103236|ref|YP_003613382.1| glycyl-radical activating family protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057695|gb|ADF62433.1| glycyl-radical activating family protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 299 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVET 118 G V+++ + ++ G L+GGEP + D+ L +A +++G AVET Sbjct: 101 GEERQVEEIMATVLRDKPFYDRSGGGITLSGGEPFMNPDLALALFKASHEQGIHTAVET 159 >gi|237711557|ref|ZP_04542038.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237725989|ref|ZP_04556470.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265752984|ref|ZP_06088553.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|229435797|gb|EEO45874.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229454252|gb|EEO59973.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263236170|gb|EEZ21665.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 360 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 14/90 (15%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR C +D I G + +++ + + ++T Sbjct: 42 CNL-----------HCRHCGSDCKKIAG--HPDMPKEDFLRVLDSVSAQNDPHKIFVIIT 88 Query: 92 GGEPLLQVDVPLI-QALNKRGFEIAVETNG 120 GGEPL++ D+ +A+ +RGF + TNG Sbjct: 89 GGEPLMRKDLEECGRAIYERGFPWGMVTNG 118 >gi|153874965|ref|ZP_02002969.1| heme d1 biosynthesis protein [Beggiatoa sp. PS] gi|152068570|gb|EDN67030.1| heme d1 biosynthesis protein [Beggiatoa sp. PS] Length = 341 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 27/102 (26%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT--------GEK 83 CNL +C C + + L +++E+ G+ Sbjct: 18 CNL-----------RCTHC-----YQDNYARNELSFEHLLNILEQFKTLLATLTERHGKP 61 Query: 84 EGRYCVLTGGEPLL-QVDVPLIQALNKRG--FEIAVETNGTI 122 + +TGGEP Q + L++ F A+ TNG+ Sbjct: 62 IHAHITVTGGEPFARQDFLDLLEIFAAHHSLFSFAILTNGSF 103 >gi|29348365|ref|NP_811868.1| putative pyruvate formate-lyase 3 activating enzyme [Bacteroides thetaiotaomicron VPI-5482] gi|253569265|ref|ZP_04846675.1| glycyl-radical enzyme activating family protein [Bacteroides sp. 1_1_6] gi|29340269|gb|AAO78062.1| putative pyruvate formate-lyase 3 activating enzyme [Bacteroides thetaiotaomicron VPI-5482] gi|251841284|gb|EES69365.1| glycyl-radical enzyme activating family protein [Bacteroides sp. 1_1_6] Length = 299 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 44/144 (30%), Gaps = 48/144 (33%) Query: 22 RVAVFCRFSGCNL---WSGREQDRLSA--------QCRFC--------------DTDFVG 56 R +F GCNL W + +C C D++ + Sbjct: 20 RSTIF--LKGCNLRCKWCHNPETWSMKPQLQYIEDKCIHCFSCITVCEYEVLFIDSNRLS 77 Query: 57 IQ-------------------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 I G + + I + I +K G L+GGEPL Sbjct: 78 IHRERCTDCGKCTERCTSGALSWIGKEVDSSDIIHEILQDLIYYQKSGGGITLSGGEPLQ 137 Query: 98 QVDVPL--IQALNKRGFEIAVETN 119 Q D L +Q + AVETN Sbjct: 138 QKDFALDILQKCREHRIHTAVETN 161 >gi|238894848|ref|YP_002919582.1| pyrroloquinoline quinone biosynthesis protein PqqE [Klebsiella pneumoniae NTUH-K2044] gi|130802|sp|P27507|PQQE_KLEPN RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|809708|emb|CAA41583.1| pqqE [Klebsiella pneumoniae] gi|238547164|dbj|BAH63515.1| pyrroloquinoline quinone synthesis protein E [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 380 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF +Q ++ + G + + Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFARQDKE----LTTEQWIEVFRQARAMGSVQLGF-- 64 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL + D+P LI+A GF + T+G Sbjct: 65 -SGGEPLTRKDLPELIRAARDLGFYTNLITSG 95 >gi|330010617|ref|ZP_08306843.1| coenzyme PQQ biosynthesis protein E [Klebsiella sp. MS 92-3] gi|328534442|gb|EGF61037.1| coenzyme PQQ biosynthesis protein E [Klebsiella sp. MS 92-3] Length = 380 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF +Q ++ + G + + Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFARQDKE----LTTEQWIEVFRQARAMGSVQLGF-- 64 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL + D+P LI+A GF + T+G Sbjct: 65 -SGGEPLTRKDLPELIRAARDLGFYTNLITSG 95 >gi|268324255|emb|CBH37843.1| conserved hypothetical protein, radical SAM superfamily [uncultured archaeon] Length = 365 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + G T+ G+ +DQ+A++ +L+ Sbjct: 23 CNLRCPHCYIDAEER------AGKGELSTEEGKMLIDQIAEV----------SKPILILS 66 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ DV L + +G +A+ TNGT+ Sbjct: 67 GGEPLLRADVFELARYATGKGLTVAMGTNGTL 98 >gi|153941209|ref|YP_001390424.1| radical SAM domain-containing protein [Clostridium botulinum F str. Langeland] gi|170755989|ref|YP_001780700.1| radical SAM domain-containing protein [Clostridium botulinum B1 str. Okra] gi|152937105|gb|ABS42603.1| radical SAM domain protein [Clostridium botulinum F str. Langeland] gi|169121201|gb|ACA45037.1| radical SAM domain protein [Clostridium botulinum B1 str. Okra] Length = 297 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD-LIEEQWITGEKEGRYCVL 90 CNL C FC + + ++ ++ D ++++ + + Sbjct: 20 CNL-----------ACDFC------PETRRKPQFMPIEIFDKILDQIKPYTDYIYFHVK- 61 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL D+ + K+GF++ + TNGT+ Sbjct: 62 --GEPLLHPDIDKFLDLSYKKGFKVNITTNGTL 92 >gi|152970364|ref|YP_001335473.1| pyrroloquinoline quinone biosynthesis protein PqqE [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|166989888|sp|A6T9H2|PQQE_KLEP7 RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|150955213|gb|ABR77243.1| Pyrroloquinolinquinone Synthase E [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 380 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF +Q ++ + G + + Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFARQDKE----LTTEQWIEVFRQARAMGSVQLGF-- 64 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL + D+P LI+A GF + T+G Sbjct: 65 -SGGEPLTRKDLPELIRAARDLGFYTNLITSG 95 >gi|158522203|ref|YP_001530073.1| glycyl-radical activating family protein [Desulfococcus oleovorans Hxd3] gi|158511029|gb|ABW67996.1| glycyl-radical enzyme activating protein family [Desulfococcus oleovorans Hxd3] Length = 307 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 58/174 (33%), Gaps = 27/174 (15%) Query: 32 CN---LWSGREQDRLSAQCRFCDTDFVGIQGTK-------GGRYNVDQLADLIEEQWITG 81 C L +C C F + G V + + + Sbjct: 68 CPEQALSKANPFYIDRKRCTLC---FACVAACPSGALEQVGKEMPVTDILEQVLPDKPFF 124 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139 + G L+GGEP L +D L+ A+ + VET G + + + + Sbjct: 125 DASGGGVTLSGGEPTLFMDFTADLLTAIKREDIHTLVETCGLFDAERFVTML-------Y 177 Query: 140 DLKIKGGQELKLVFPQVNVS----PENYIGFDFER-FSLQPMDGPFLEENTNLA 188 + ++K++ P + + P + I +F F+ P DG L T L Sbjct: 178 PMLDTIYFDIKIIDPTAHKTYCGVPNDRILANFATLFARAPKDGKTLLPRTPLI 231 >gi|307705627|ref|ZP_07642478.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis SK597] gi|307620803|gb|EFN99888.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis SK597] Length = 264 Score = 43.5 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 26/118 (22%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G VF GC++ +C++C DT + Sbjct: 18 TESFGSVDGPGIRFI----VF--LQGCHM-----------RCQYCHNPDT-WAMESNKSR 59 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 R D L + + + G K G ++GGE LLQ+D + L + G ++T Sbjct: 60 ERTVDDVLTEALRYRGFWGNKGG--ITVSGGEALLQIDFLIALFTKAKEHGIHCTLDT 115 >gi|126465695|ref|YP_001040804.1| radical SAM domain-containing protein [Staphylothermus marinus F1] gi|126014518|gb|ABN69896.1| Radical SAM domain protein [Staphylothermus marinus F1] Length = 564 Score = 43.5 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 6/89 (6%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L + +R + C +C + G ++Q+ +I + G LTGG Sbjct: 114 LVNIVLTNRCNLSCWYC-FFYAEAAGYVYEP-TIEQIVSMIRQIKKQGV--AVNVQLTGG 169 Query: 94 EPLL-QVDVPLIQALNKRGFE-IAVETNG 120 EP L + + +++AL G + + TNG Sbjct: 170 EPTLREDLIDIVKALKAEGVRHLQLNTNG 198 >gi|67527057|gb|AAY68326.1| putative molybdenum cofactor biosynthesis enzyme [uncultured marine bacterium 66A03] Length = 334 Score = 43.5 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 20/149 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C ++ + K ++++A + + G K+ R LTGGEPL++ + Sbjct: 23 DRCDFRCVYCMSEQMTFL-PKKDLLTLEEIAIVCDSFIELGTKKIR---LTGGEPLVRRN 78 Query: 101 V-PLIQAL---NKRGF--EIAVETNGT-------IEPPQGIDWICVSPKAGCDLK---IK 144 + LI+ L K+G EI + TNG+ + G+ I VS K I Sbjct: 79 IMHLIKHLGTHVKKGKLEEITITTNGSQLQKFSDLLLEAGVRRINVSIDTLDPEKFERIT 138 Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSL 173 +L +V ++ + + + +L Sbjct: 139 RWGKLDVVLNGLDAAKKAGLKIKLNTVAL 167 >gi|302342216|ref|YP_003806745.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075] gi|301638829|gb|ADK84151.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075] Length = 370 Score = 43.5 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 25/112 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + +C Q +L+ + G +LT Sbjct: 38 CNLRCLHCRAGAEDEC-------------YPDELTTAQGEELLRDLATMGR---PVVILT 81 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEPPQ--------GIDWICVS 134 GGEPLL L + G + + TNG + P+ GI I VS Sbjct: 82 GGEPLLRHDIFHLAAYGHGLGLRMVMGTNGVLITPEVARRLVEAGIQRISVS 133 >gi|325829928|ref|ZP_08163386.1| molybdenum cofactor biosynthesis protein A [Eggerthella sp. HGA1] gi|325488095|gb|EGC90532.1| molybdenum cofactor biosynthesis protein A [Eggerthella sp. HGA1] Length = 333 Score = 43.5 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C G+Q ++ ++ ++ E + R LTGGEPL+++ Sbjct: 18 DRCNFRCIYC-MPEEGVQSLAHE--DILRIEEIEEAVRVAAGMGIRSIRLTGGEPLVRLG 74 Query: 101 -VPLIQAL-NKRGFE-IAVETNGTIEPPQGID 129 V L++A+ + G E +++ TNG + P D Sbjct: 75 VVDLVRAIAHTPGIENVSMTTNGVLLPKMAAD 106 >gi|317489950|ref|ZP_07948442.1| molybdenum cofactor biosynthesis protein A [Eggerthella sp. 1_3_56FAA] gi|316910948|gb|EFV32565.1| molybdenum cofactor biosynthesis protein A [Eggerthella sp. 1_3_56FAA] Length = 333 Score = 43.5 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C G+Q ++ ++ ++ E + R LTGGEPL+++ Sbjct: 18 DRCNFRCIYC-MPEEGVQSLAHE--DILRIEEIEEAVRVAAGMGIRSIRLTGGEPLVRLG 74 Query: 101 -VPLIQAL-NKRGFE-IAVETNGTIEPPQGID 129 V L++A+ + G E +++ TNG + P D Sbjct: 75 VVDLVRAIAHTPGIENVSMTTNGVLLPKMAAD 106 >gi|297159777|gb|ADI09489.1| radical SAM domain-containing protein [Streptomyces bingchenggensis BCW-1] Length = 466 Score = 43.5 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 18/90 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C F G + R +++++ L E G LT Sbjct: 109 CNL-----------GCTHC---FAGDLPRREKRLSLEEIDRLFAEMARLGAFRLG---LT 151 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 GGEPLL+ D+ +I G + TNG Sbjct: 152 GGEPLLRKDIFQIIDLALAHGLAPCITTNG 181 >gi|260221009|emb|CBA29146.1| Molybdenum cofactor biosynthesis protein A [Curvibacter putative symbiont of Hydra magnipapillata] Length = 385 Score = 43.5 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 29/135 (21%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNV----DQLADLIEEQWITGEKEGRYCVLTGGEPL 96 DR + +C +C V + ++ +++ L ++ G ++ R LTGGEPL Sbjct: 55 DRCNFRCSYCMPKEVFHKDYPYLPHSALLSFEEITTLAKQFVALGVQKIR---LTGGEPL 111 Query: 97 LQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS-------- 134 L+ ++ LI+ L ++ + TNG++ G+ + VS Sbjct: 112 LRKNIETLIEQLAAITTPEGHALDLTLTTNGSLLAKKARSLKDAGLQRVTVSLDGLDDRI 171 Query: 135 PKAGCDLKIKGGQEL 149 KA D+ L Sbjct: 172 FKAMNDVDFPVADVL 186 >gi|257063876|ref|YP_003143548.1| predicted Fe-S oxidoreductase [Slackia heliotrinireducens DSM 20476] gi|256791529|gb|ACV22199.1| predicted Fe-S oxidoreductase [Slackia heliotrinireducens DSM 20476] Length = 769 Score = 43.5 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + T + G + +D +A + + +LT Sbjct: 82 CNLACAHCRAAAHC------TPYPGELSLDECKAVMDDIASITD----------PILILT 125 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPL++ D+ +I +++G + TNGT+ Sbjct: 126 GGEPLMRKDIWEIIDYAHEKGLHPVIGTNGTL 157 >gi|139438417|ref|ZP_01771933.1| Hypothetical protein COLAER_00923 [Collinsella aerofaciens ATCC 25986] gi|133775956|gb|EBA39776.1| Hypothetical protein COLAER_00923 [Collinsella aerofaciens ATCC 25986] Length = 272 Score = 43.5 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 29/89 (32%), Gaps = 25/89 (28%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRY-NVDQLADLIEEQWIT 80 VF GC + +C +C DT GG V+ L D + Sbjct: 41 VFV--QGCPM-----------RCAYCHNPDT-----WSVNGGTMVTVEHLMDEFQSN--H 80 Query: 81 GEKEGRYCVLTGGEPLLQVDVPLIQALNK 109 ++GGEPLLQ + L Sbjct: 81 EFYRSGGITVSGGEPLLQPEF-LADLFCA 108 >gi|325960016|ref|YP_004291482.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanobacterium sp. AL-21] gi|325331448|gb|ADZ10510.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanobacterium sp. AL-21] Length = 247 Score = 43.5 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 14/104 (13%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 + +C +C G Y ++++ IEE + V++GGEPL+Q Sbjct: 35 KCMLRCPYC---HNSEIIEGGDVYQLEEIFQKIEESIDFIDS----VVISGGEPLMQDTQ 87 Query: 102 PLIQALNKRGFEIA--VETNGTIE-----PPQGIDWICVSPKAG 138 + + E++ ++TNG + ID++ + KA Sbjct: 88 VFEILKHAKSLELSTKMDTNGYYPEKLQKMIKLIDYVALDIKAP 131 >gi|182701901|ref|ZP_02617584.2| radical SAM domain protein [Clostridium botulinum Bf] gi|237794363|ref|YP_002861915.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657] gi|182673949|gb|EDT85910.1| radical SAM domain protein [Clostridium botulinum Bf] gi|229264062|gb|ACQ55095.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657] Length = 297 Score = 43.5 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 20/92 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC K +++ ++++ + + Sbjct: 20 CNL-----------ACDFC-----PQTRRKPQFMSIEIFDKILDQIKPYTDYIYFHVK-- 61 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL D+ + K+GF++ + TNGT+ Sbjct: 62 -GEPLLHPDIDKFLDLSYKKGFKVNITTNGTL 92 >gi|20094976|ref|NP_614823.1| molybdenum cofactor biosynthesis protein [Methanopyrus kandleri AV19] gi|24211984|sp|Q8TV60|MOAA_METKA RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|19888230|gb|AAM02753.1| Molybdenum cofactor biosynthesis enzyme [Methanopyrus kandleri AV19] Length = 307 Score = 43.5 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 17/102 (16%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R + C +C +G + GR + A+ E R +TGGEPLL+ D Sbjct: 19 RCNMACVYC-----HREGERPGR-SELSAAEWGRLLRACAEIGVRKVKITGGEPLLRRD- 71 Query: 102 PLIQALN-KRGF-EIAVETNGTIEPP-------QGIDWICVS 134 LI+ + GF E+++ TNG + G+D + VS Sbjct: 72 -LIEIIENAEGFEEVSLVTNGVLLADYAGDLAEAGLDRVNVS 112 >gi|318040844|ref|ZP_07972800.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp. CB0101] Length = 342 Score = 43.5 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 34/124 (27%) Query: 27 CRF---SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 R + CNL C +C + G +++Q + + G K Sbjct: 14 LRLSLTARCNL-----------ACPYC----LPDGQEPSGLLSMEQRLQVAKAAVALGAK 58 Query: 84 EGRYCVLTGGEPLLQVDV-PLIQA---LNKRGF-EIAVETNGTI--------EPPQGIDW 130 R LTGGEPLL ++ LI A L + G EIA+ +NG + G+D Sbjct: 59 SLR---LTGGEPLLYKELDELIGALQPLRREGLQEIALTSNGMLLSAERAQQLREAGLDR 115 Query: 131 ICVS 134 + +S Sbjct: 116 LTLS 119 >gi|207110535|ref|ZP_03244697.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori HPKX_438_CA4C1] Length = 98 Score = 43.5 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 12/81 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLLQV-DV 101 +C++C + T ++ ++L +++E I ++ + +TGGEPLL+ Sbjct: 24 RCQYC------MPATPLDFFDDEELLPLDNVLEFLKIAIDEGVKKIRITGGEPLLRKGLD 77 Query: 102 PLIQALNKRGFEIA--VETNG 120 I L+ E+A + TNG Sbjct: 78 EFIAKLHAYNKEVALVLSTNG 98 >gi|20094332|ref|NP_614179.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19] gi|19887388|gb|AAM02109.1| Fe-S oxidoreductase fused to a metal-binding domain [Methanopyrus kandleri AV19] Length = 468 Score = 43.5 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C + G + ++ ++IE E + Sbjct: 127 CNL-----------RCEHC---YSEAGKPAPGELDTERALEVIERF---SEWNVPGLAFS 169 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GGEPL++ D L +A G A+ TNGT+ Sbjct: 170 GGEPLMRDDFFELAEASANEGMFTALATNGTL 201 >gi|312880166|ref|ZP_07739966.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260] gi|310783457|gb|EFQ23855.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260] Length = 326 Score = 43.5 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 54/154 (35%), Gaps = 32/154 (20%) Query: 31 GCNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCNL C FC D+ + ++L L E Sbjct: 79 GCNL-----------DCPFCQNDSLSHPLGWIASPFLEPEELVALAEAGGEGA------V 121 Query: 89 VLTGGEPLLQVDVPLIQA---LNKRGFEI-AVETNGTIEPPQ------GIDWICVSPKAG 138 T EPL+ + L++A L++RG + + TNGTIEP +D V KA Sbjct: 122 AFTYNEPLIHPEY-LLEAGRQLHRRGIRVVWI-TNGTIEPEPLEEILGKVDAANVDLKAF 179 Query: 139 CDLKIKG-GQELKLVFPQVNVSPENYIGFDFERF 171 + G +L+ V + E + + Sbjct: 180 TQEGYRSLGGDLESVLRTLRRMREAGVHLEVTHL 213 >gi|237802427|ref|ZP_04590888.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025284|gb|EGI05340.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. oryzae str. 1_6] Length = 389 Score = 43.5 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C + +G +Q +++E G + + Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELTTEQWFKVMQEAREMGAAQ---IGFS 76 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI + GF + T+G Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSG 106 >gi|50122691|ref|YP_051858.1| putative pyruvate formate-lyase activating enzyme [Pectobacterium atrosepticum SCRI1043] gi|49613217|emb|CAG76668.1| putative pyruvate formate-lyase activating enzyme [Pectobacterium atrosepticum SCRI1043] Length = 316 Score = 43.5 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 2/94 (2%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 G V +L +I + + + G L+GGE LQ D V L+QA ++ AVET Sbjct: 114 GKDMTVAELMAVIMQDYSFYQSSGGGVTLSGGEVSLQTDFAVALLQACKQKMINTAVETQ 173 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153 GT V+ D+K + K +F Sbjct: 174 GTTSISHYDQLAAVTDMFLFDIKHIDTNQHKALF 207 >gi|330838563|ref|YP_004413143.1| molybdenum cofactor biosynthesis protein A [Selenomonas sputigena ATCC 35185] gi|329746327|gb|AEB99683.1| molybdenum cofactor biosynthesis protein A [Selenomonas sputigena ATCC 35185] Length = 328 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 6/85 (7%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +CR+C K ++ +++ + R LTGGEPLL+ Sbjct: 18 DRCNLRCRYC---MPADGVEKLSHADILSFEEIVRVVRALAQLGIRKVRLTGGEPLLRRG 74 Query: 101 -VPLIQALNK-RGFE-IAVETNGTI 122 V L++ + G E +A+ TNG + Sbjct: 75 VVDLVREIKAVEGIERVALTTNGVL 99 >gi|300856502|ref|YP_003781486.1| putative molybdenum cofactor biosynthesis protein A [Clostridium ljungdahlii DSM 13528] gi|300436617|gb|ADK16384.1| predicted molybdenum cofactor biosynthesis protein A [Clostridium ljungdahlii DSM 13528] Length = 322 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 6/91 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +C +C ++ G + + +I+ G + RY TG Sbjct: 10 NYLRISLTDRCNLRCIYCMPKEGIVKRPYGDLLRFEDILKIIKAAATLGINKIRY---TG 66 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 GEPL+ D+ LI+ +G +A+ TNG Sbjct: 67 GEPLIMKDIEYLIRETANIKGITDVAITTNG 97 >gi|224367545|ref|YP_002601708.1| PflC1 [Desulfobacterium autotrophicum HRM2] gi|223690261|gb|ACN13544.1| PflC1 [Desulfobacterium autotrophicum HRM2] Length = 302 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 G ++ ++AD+ + ++ G +GGEPL Q + L KRG IA+ET+ Sbjct: 104 GKTFSPREVADITLKDVAFYDESGGGVTFSGGEPLFQWQFVRECSKLLRKRGVHIAMETS 163 Query: 120 G 120 G Sbjct: 164 G 164 >gi|254442555|ref|ZP_05056031.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Verrucomicrobiae bacterium DG1235] gi|198256863|gb|EDY81171.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Verrucomicrobiae bacterium DG1235] Length = 251 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 21/122 (17%) Query: 28 RFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R + C LW Q C FC ++DF + G R +V+ + ++ + Sbjct: 24 RTA-CILWFTGCQM----ACPFCHNSDFATGE---GKRIDVEDTLAFLRKRRRMLDG--- 72 Query: 87 YCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVSPKAG 138 +GGE LL V P+I+A+ + G+ + V+TNG + +D++ + KA Sbjct: 73 -VTFSGGECLLSPSVVPMIRAVKELGYAVKVDTNGGMPDRLRELIEEGLVDYVAMDFKAP 131 Query: 139 CD 140 D Sbjct: 132 LD 133 >gi|330985835|gb|EGH83938.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. lachrymans str. M301315] Length = 389 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C + +G +Q +++E G + + Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELTTEQWFKVMQEAREMGAAQ---IGFS 76 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI + GF + T+G Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSG 106 >gi|330891270|gb|EGH23931.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. mori str. 301020] Length = 389 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C + +G +Q +++E G + + Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELTTEQWFKVMQEAREMGAAQ---IGFS 76 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI + GF + T+G Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSG 106 >gi|212695406|ref|ZP_03303534.1| hypothetical protein BACDOR_04955 [Bacteroides dorei DSM 17855] gi|212662041|gb|EEB22615.1| hypothetical protein BACDOR_04955 [Bacteroides dorei DSM 17855] Length = 348 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 14/90 (15%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR C +D I G + +++ + + ++T Sbjct: 30 CNL-----------HCRHCGSDCKKIAG--HPDMPKEDFLRVLDSVSAQNDPHKIFVIIT 76 Query: 92 GGEPLLQVDVPLI-QALNKRGFEIAVETNG 120 GGEPL++ D+ +A+ +RGF + TNG Sbjct: 77 GGEPLMRKDLEECGRAIYERGFPWGMVTNG 106 >gi|71737663|ref|YP_276810.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. phaseolicola 1448A] gi|83288390|sp|Q48CT3|PQQE_PSE14 RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|71558216|gb|AAZ37427.1| coenzyme PQQ biosynthesis protein E [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326441|gb|EFW82494.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. glycinea str. B076] gi|320331587|gb|EFW87525.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. glycinea str. race 4] gi|330872310|gb|EGH06459.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. glycinea str. race 4] Length = 389 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C + +G +Q +++E G + + Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELTTEQWFKVMQEAREMGAAQ---IGFS 76 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI + GF + T+G Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSG 106 >gi|113473997|ref|YP_720058.1| hypothetical protein Tery_0077 [Trichodesmium erythraeum IMS101] gi|113473998|ref|YP_720059.1| hypothetical protein Tery_0078 [Trichodesmium erythraeum IMS101] gi|113473999|ref|YP_720060.1| hypothetical protein Tery_0079 [Trichodesmium erythraeum IMS101] gi|110165045|gb|ABG49585.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101] gi|110165046|gb|ABG49586.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101] gi|110165047|gb|ABG49587.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101] Length = 72 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 8/73 (10%) Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198 L I+ G+EL+ + V + + LQP + L + Sbjct: 8 IKLVIETGKELEFYSKILLVKNKTPV-------FLQPESY-NRDFTLPLVQKLLREYSHC 59 Query: 199 RLSVQTHKFIGIR 211 RLS+Q HK++GI+ Sbjct: 60 RLSIQLHKYLGIK 72 >gi|325919115|ref|ZP_08181174.1| GTP cyclohydrolase subunit MoaA [Xanthomonas gardneri ATCC 19865] gi|325550424|gb|EGD21219.1| GTP cyclohydrolase subunit MoaA [Xanthomonas gardneri ATCC 19865] Length = 344 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 16/102 (15%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 +C +C D R + DQL L+ G + R LTGGEPLL+ D+P Sbjct: 36 RCGYCMPADRVPDDYGFDAQQRLSFDQLETLVRAFVSVGVTKVR---LTGGEPLLRRDLP 92 Query: 103 -LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 L+ L G E +A+ TNGT+ Q + I VS Sbjct: 93 SLVARLTAIDGIEDLALTTNGTLLARQAVALRQAGLRRITVS 134 >gi|325264173|ref|ZP_08130905.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp. D5] gi|324030657|gb|EGB91940.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp. D5] Length = 317 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 51 DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALN 108 D + G + G Y VD++ + + I + G L+GGE L+ L+Q L Sbjct: 108 DVCYAGARKISGHYYTVDEVYEKVIRDRIFYDTTGGGVTLSGGEVLVYWKFAAQLLQKLK 167 Query: 109 KRGFEIAVETNG 120 G A+ET G Sbjct: 168 HGGIHTAIETCG 179 >gi|283131319|dbj|BAI63324.1| putative glycyl-radical activating family protein [Streptococcus dysgalactiae subsp. equisimilis] Length = 329 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 G + +L +I E + G L+GGE L Q + + L++A + G AVET Sbjct: 127 GESKTISELLAIIHEDDAFYDMSGGGVTLSGGECLAQPEGAIALLRACKEDGLNTAVETA 186 Query: 120 G 120 G Sbjct: 187 G 187 >gi|229096672|ref|ZP_04227643.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock3-29] gi|228686878|gb|EEL40785.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock3-29] Length = 337 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 14/89 (15%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C +D+ +Q D++ L G + R LTGGE Sbjct: 22 DRCNFRCIYCMPAEVFGSDYAFLQEEF--LLTFDEIERLARLFISMGVNKIR---LTGGE 76 Query: 95 PLLQVDVP-LIQALNK-RGFE-IAVETNG 120 PLL+ D+P LI L K G I + TNG Sbjct: 77 PLLRKDLPKLIARLAKLEGLTDIGLTTNG 105 >gi|222529567|ref|YP_002573449.1| radical SAM domain-containing protein [Caldicellulosiruptor bescii DSM 6725] gi|222456414|gb|ACM60676.1| Radical SAM domain protein [Caldicellulosiruptor bescii DSM 6725] Length = 429 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 47/114 (41%), Gaps = 27/114 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL+ C+ C + + + + +++ + +++ G + +++ Sbjct: 97 CNLY-----------CKGCYS-YDQNRNDESQDLSMEYFLEAVKQLKTYGLDK---IIIS 141 Query: 92 GGEPLLQVDV-PLIQALN---KRGFEIAVETNGT-------IEPPQGIDWICVS 134 GGEP L+ D+ I+ L + + + TNGT + +D + VS Sbjct: 142 GGEPTLRNDLDEFIKYLKEILDINYIVLI-TNGTNLPHNLLHTIREYVDDVAVS 194 >gi|254168362|ref|ZP_04875207.1| radical SAM domain protein, putative [Aciduliprofundum boonei T469] gi|289595846|ref|YP_003482542.1| glycyl-radical enzyme activating protein family [Aciduliprofundum boonei T469] gi|197622643|gb|EDY35213.1| radical SAM domain protein, putative [Aciduliprofundum boonei T469] gi|289533633|gb|ADD07980.1| glycyl-radical enzyme activating protein family [Aciduliprofundum boonei T469] Length = 303 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 19/134 (14%) Query: 32 CNLWSGREQDRLSAQ-----CRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGE 82 C D + C +C T+ + G + V++L IE+ + Sbjct: 65 CPYKLIYFDDFGAQHIERDKCTYCGICTENCPTSALEFIGRKITVEELMKEIEKDITLYD 124 Query: 83 KEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETNG--TIEPPQGI-DWICVSPK 136 G +GGEPL+Q + L +AL K G ++T+G + E + I D+ + Sbjct: 125 SSGGGVTFSGGEPLMQPEF-LKEALIECKKIGVHTTLDTSGYASREVLESIMDYADL--- 180 Query: 137 AGCDLKIKGGQELK 150 D+K+ +E K Sbjct: 181 FLYDIKLYDSKEHK 194 >gi|167581126|ref|ZP_02374000.1| molybdenum cofactor biosynthesis protein A [Burkholderia thailandensis TXDOH] Length = 370 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 23/113 (20%) Query: 41 DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 DR + +C +C ++++ L G ++ R +TGGEP Sbjct: 45 DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 100 Query: 96 LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 LL+ ++ LI+ L K R +I + TNG++ G+ + VS Sbjct: 101 LLRKNIEFLIERLAKMTTVDGRALDITLTTNGSLLVRKAKSLRDAGLSRVTVS 153 >gi|83721219|ref|YP_442241.1| molybdenum cofactor biosynthesis protein A [Burkholderia thailandensis E264] gi|167619209|ref|ZP_02387840.1| molybdenum cofactor biosynthesis protein A [Burkholderia thailandensis Bt4] gi|257138434|ref|ZP_05586696.1| molybdenum cofactor biosynthesis protein A [Burkholderia thailandensis E264] gi|83655044|gb|ABC39107.1| molybdenum cofactor biosynthesis protein A [Burkholderia thailandensis E264] Length = 370 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 23/113 (20%) Query: 41 DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 DR + +C +C ++++ L G ++ R +TGGEP Sbjct: 45 DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 100 Query: 96 LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 LL+ ++ LI+ L K R +I + TNG++ G+ + VS Sbjct: 101 LLRKNIEFLIERLAKMTTVDGRALDITLTTNGSLLVRKAKSLRDAGLSRVTVS 153 >gi|116749682|ref|YP_846369.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116698746|gb|ABK17934.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB] Length = 404 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 9/93 (9%) Query: 32 CNLWSGREQDRLSAQ-CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL D + Q RY V+ L+DL+ E + L Sbjct: 65 CNLRCTTCGQWGKDGFLHGRDQKELKKQEVSLDRY-VEVLSDLVRE------GHRPFVYL 117 Query: 91 TGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 GGEP+L V LI+ + G +++ TNGT Sbjct: 118 WGGEPMLYEGSVELIERASMMGLPVSIATNGTH 150 >gi|284045650|ref|YP_003395990.1| molybdenum cofactor biosynthesis protein A [Conexibacter woesei DSM 14684] gi|283949871|gb|ADB52615.1| molybdenum cofactor biosynthesis protein A [Conexibacter woesei DSM 14684] Length = 330 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 8/84 (9%) Query: 41 DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C++C + G R + ++ + LTGGEPL++ Sbjct: 22 DRCNFRCQYC----MPADGLPWLEREEILTFEEIARLVGLLASMGVHDVRLTGGEPLVRR 77 Query: 100 DVP-LIQALNKRG--FEIAVETNG 120 D P L++ L ++++ TNG Sbjct: 78 DFPRLVEMLAAIPAVHDLSITTNG 101 >gi|257483070|ref|ZP_05637111.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289650652|ref|ZP_06481995.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. aesculi str. 2250] gi|331011695|gb|EGH91751.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 389 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C + +G +Q +++E G + + Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELTTEQWFKVMQEAREMGAAQ---IGFS 76 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI + GF + T+G Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSG 106 >gi|239909106|ref|YP_002955848.1| ribonucleoside-triphosphate reductase activating enzyme [Desulfovibrio magneticus RS-1] gi|239798973|dbj|BAH77962.1| ribonucleoside-triphosphate reductase activating enzyme [Desulfovibrio magneticus RS-1] Length = 221 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 25/101 (24%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY- 87 F GCNL +C C + A + E+ + E R Sbjct: 31 FGGCNL-----------RCPHC--------HNAALAWTPQAGAAPLTEKAVRRFVEARRR 71 Query: 88 ----CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 V+TGGEP L +P L A+ G + V++NG Sbjct: 72 WLDGLVITGGEPTLTPGMPGLAAAVAASGLPVKVDSNGLRP 112 >gi|118576205|ref|YP_875948.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A] gi|118194726|gb|ABK77644.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A] Length = 589 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 15/142 (10%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY---NVDQLADLIEEQWITGEKEGRYCVL 90 L + +R C +C F +G +G ++DQ+ +++ G + Sbjct: 144 LANMIVTNRCDLTCWYC--FFYVKKGLEGAYMYEPSLDQVRAMMKTLRSERPIAGNSIQI 201 Query: 91 TGGEPLLQVDV-PLIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 TGGEP+L+ D+ +I+ + + G I + TNG + P+A D+++ G Sbjct: 202 TGGEPMLRTDITDIIKIMKEEGVDHIQMNTNGIRHA--------MDPEAARDVRLAGCNN 253 Query: 149 LKLVFPQVNVSPENYIGFDFER 170 L L F V ++ Sbjct: 254 LYLSFDGVTARTNPKNHWEIPH 275 >gi|298489172|ref|ZP_07007192.1| Coenzyme PQQ synthesis protein E [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156309|gb|EFH97409.1| Coenzyme PQQ synthesis protein E [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 389 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C + +G +Q +++E G + + Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELTTEQWFKVMQEAREMGAAQ---IGFS 76 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI + GF + T+G Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSG 106 >gi|318079380|ref|ZP_07986712.1| hypothetical protein SSA3_22497 [Streptomyces sp. SA3_actF] Length = 391 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 37/100 (37%), Gaps = 17/100 (17%) Query: 38 REQDRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 + R + CR+C DT + T A I E VL Sbjct: 9 KTHSRCNLACRYCYLYEGPDTSWRARPATASPEVRAHT-ARRIGEHAAAHALPAVSLVLH 67 Query: 92 GGEPLLQVDVPLIQALNK-------RGFEIA--VETNGTI 122 GGEPLL PL AL + G E+ V+TNGT+ Sbjct: 68 GGEPLLGGAGPL-AALAEQVRAAVPAGCEVHVTVQTNGTL 106 >gi|318060260|ref|ZP_07978983.1| hypothetical protein SSA3_20118 [Streptomyces sp. SA3_actG] Length = 415 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 37/100 (37%), Gaps = 17/100 (17%) Query: 38 REQDRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 + R + CR+C DT + T A I E VL Sbjct: 33 KTHSRCNLACRYCYLYEGPDTSWRARPATASPEVRAHT-ARRIGEHAAAHALPAVSLVLH 91 Query: 92 GGEPLLQVDVPLIQALNK-------RGFEIA--VETNGTI 122 GGEPLL PL AL + G E+ V+TNGT+ Sbjct: 92 GGEPLLGGAGPL-AALAEQVRAAVPAGCEVHVTVQTNGTL 130 >gi|240103873|ref|YP_002960182.1| Radical SAM protein, MoaA/nifB/pqqE family [Thermococcus gammatolerans EJ3] gi|239911427|gb|ACS34318.1| Radical SAM protein, MoaA/nifB/pqqE family [Thermococcus gammatolerans EJ3] Length = 590 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 4/90 (4%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 NL + +R + C +C F +G ++Q+ ++ TG Sbjct: 139 NLLNIVLTNRCNLSCWYC--FFYAREGQPIYEPTLEQIRMMLRNAKKEYPIGANAVQFTG 196 Query: 93 GEPLLQVDV-PLIQALNKRGF-EIAVETNG 120 GEP L+ D+ +I+ + G+ + + T+G Sbjct: 197 GEPTLRDDLIEIIKIAKEEGYDHVQLNTDG 226 >gi|227827328|ref|YP_002829107.1| radical SAM protein [Sulfolobus islandicus M.14.25] gi|227459123|gb|ACP37809.1| Radical SAM domain protein [Sulfolobus islandicus M.14.25] Length = 378 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 7/91 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + + + + +C C ++ ++ LI+E E + +++G Sbjct: 36 PVVTWNLTRKCNLKCLHC---YINASPESEDGSTTEEALRLIDEM---AEMKIPLIIMSG 89 Query: 93 GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GEPL++ D L +G ++A+ TNGT+ Sbjct: 90 GEPLMRRDFFELASYARIKGIKLALSTNGTL 120 >gi|319937834|ref|ZP_08012236.1| pyruvate formate-lyase 2-activating enzyme [Coprobacillus sp. 29_1] gi|319807064|gb|EFW03680.1| pyruvate formate-lyase 2-activating enzyme [Coprobacillus sp. 29_1] Length = 298 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 +G +D++ + E+ ++GGE + Q D L+ L G +A+ET Sbjct: 102 EGEYKEIDEIVKTCLQDKDFYEESDGGVTISGGEGMSQPDFVKALVNKLKDEGIHVAIET 161 Query: 119 NGTIEP 124 G I+P Sbjct: 162 TGYIQP 167 >gi|260438619|ref|ZP_05792435.1| pyruvate formate-lyase 1-activating enzyme [Butyrivibrio crossotus DSM 2876] gi|292809213|gb|EFF68418.1| pyruvate formate-lyase 1-activating enzyme [Butyrivibrio crossotus DSM 2876] Length = 256 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 19/100 (19%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ---WITG 81 VF GC +C+FC G + + L W+ Sbjct: 23 VF--LQGC-----------RMRCKFCHNPETWSM-DGGEMWTPEDLFKRAYRYKPYWMRN 68 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 K ++GGEPLLQ++ + +G ++T+ Sbjct: 69 GKLNGGITVSGGEPLLQIEFVTEFFKLAKAKGVHTTLDTS 108 >gi|149917556|ref|ZP_01906053.1| nitrite reductase [Plesiocystis pacifica SIR-1] gi|149821619|gb|EDM81017.1| nitrite reductase [Plesiocystis pacifica SIR-1] Length = 402 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 30/164 (18%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQ 105 C FC T + + + L+++ G +LTGGEP L ++P + + Sbjct: 17 CGFC------SNPTTPYTHTFESMKVLVDDFVERGYFG---VILTGGEPSLHPELPEICR 67 Query: 106 ALNKRGFEIAVETNGTI---------EPPQGIDWICVSPKAGCDLKIKGGQELK-----L 151 +G + + TNGT G+ + VS L + EL+ L Sbjct: 68 YATDQGLHVRMITNGTRLAKKAFAKEMAEAGLKLVHVS---IYSLIEEVEDELRGTPGTL 124 Query: 152 VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 + N G D + ++ +L I Y ++ Sbjct: 125 PVALQALDNANEFGIDVNINCVI---NKLNADHLDLNIRYFLEH 165 >gi|313897775|ref|ZP_07831316.1| pyruvate formate-lyase 1-activating enzyme [Clostridium sp. HGF2] gi|312957310|gb|EFR38937.1| pyruvate formate-lyase 1-activating enzyme [Clostridium sp. HGF2] Length = 246 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 27/118 (22%) Query: 8 EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66 E F ++ G G +F GC + +C++C K G + Sbjct: 11 ETFGSVDGPGVRFV----IF--LKGC-----------AMRCQYC----HNPDTWKCGEPD 49 Query: 67 VDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 D L++ G+ ++GGEPLLQ+D + L Q K ++T G Sbjct: 50 TDS-EALLKRAMRYRSYWGKNGGITVSGGEPLLQIDFLLDLFQKAKKENIHTVLDTAG 106 >gi|302348326|ref|YP_003815964.1| Predicted Fe-S oxidoreductase [Acidilobus saccharovorans 345-15] gi|302328738|gb|ADL18933.1| Predicted Fe-S oxidoreductase [Acidilobus saccharovorans 345-15] Length = 514 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 34/165 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C + +++ +++E G L+ Sbjct: 153 CNL-----------RCIHC---YQRAGAPTPDELTLEEKLRVVDELDRAGVAS---IALS 195 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 GGEP + +++A+ RG AV TNG W+ +++ +E Sbjct: 196 GGEPTIHPHFHAVLKAIASRGIHAAVATNG---------WV-----FANINELEKAKEEG 241 Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 L + +V++ + D +F P + A+ + Sbjct: 242 LKYVEVSIDSASPEKHD--KFRGVPGSWERAVKALENAVKLGMDH 284 >gi|187927999|ref|YP_001898486.1| molybdenum cofactor biosynthesis protein A [Ralstonia pickettii 12J] gi|187724889|gb|ACD26054.1| molybdenum cofactor biosynthesis protein A [Ralstonia pickettii 12J] Length = 373 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 25/136 (18%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ ++ + + +++ + G ++ R LTGGE Sbjct: 52 DRCNFRCVYCMPKDVFDKDYRFLRHS--ELLSFEEIERMARLFIEHGVEKIR---LTGGE 106 Query: 95 PLLQVDVP-LIQALN----KRGFE--IAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ D+ L++ L G + + TNG + G+ + VS D Sbjct: 107 PLLRKDIERLVEMLARLTTAEGKPLDLTLTTNGALLARKAQSLKDAGLTRVTVSLDGIDD 166 Query: 141 LKIKGGQELKLVFPQV 156 + ++ +V Sbjct: 167 ATFRRMNDVDFAVGEV 182 >gi|113473996|ref|YP_720057.1| hypothetical protein Tery_0076 [Trichodesmium erythraeum IMS101] gi|110165044|gb|ABG49584.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101] Length = 72 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 8/73 (10%) Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198 L I+ G+EL+ + V + + LQP + L + Sbjct: 8 IKLVIETGKELEFYSKILLVKNKTPV-------FLQPESY-NRDFTLPLVQKLLQEYSHC 59 Query: 199 RLSVQTHKFIGIR 211 RLS+Q HK++GI+ Sbjct: 60 RLSIQLHKYLGIK 72 >gi|258544998|ref|ZP_05705232.1| pyruvate formate-lyase 1-activating enzyme [Cardiobacterium hominis ATCC 15826] gi|258519801|gb|EEV88660.1| pyruvate formate-lyase 1-activating enzyme [Cardiobacterium hominis ATCC 15826] Length = 247 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 24/103 (23%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C +C DT ++ K + VD+L + + Sbjct: 24 VF--TQGC-----------LMRCLYCHNRDT--WDMETDKSRKITVDELMQQVIQYRFYL 68 Query: 82 EKEGRYCVLTGGEPLLQVDVPLIQ----ALNKRGFEIAVETNG 120 + G +GGE LLQ I+ A G ++TNG Sbjct: 69 KATGGGVTASGGESLLQP--EFIRDWFVACKAYGIHTCLDTNG 109 >gi|258514870|ref|YP_003191092.1| Radical SAM domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257778575|gb|ACV62469.1| Radical SAM domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 307 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 5/80 (6%) Query: 44 SAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VD 100 + +C F CD FV + G ++ QL +++ + G E + GGEP L V Sbjct: 11 TYRCTFECDHCFVWGSPWQSGTLSLKQLREILRQAEAVGSLE--WIYFEGGEPFLFYPVL 68 Query: 101 VPLIQALNKRGFEIAVETNG 120 + ++ + GF + + TNG Sbjct: 69 LEAVREASAAGFRVGIVTNG 88 >gi|163751863|ref|ZP_02159078.1| pyruvate formate-lyase 1 activating enzyme [Shewanella benthica KT99] gi|161328279|gb|EDP99441.1| pyruvate formate-lyase 1 activating enzyme [Shewanella benthica KT99] Length = 220 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 20/96 (20%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 GC +C++C DT G V +L + I E G Sbjct: 2 QGC-----------LMRCQYCHNRDT----WDLHGGQEVEVKELMEQIISYRPFLEASGG 46 Query: 87 YCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + L + G ++TNG Sbjct: 47 GVTASGGEAILQAEFVSALFAECKQEGIHTCLDTNG 82 >gi|126178829|ref|YP_001046794.1| radical SAM domain-containing protein [Methanoculleus marisnigri JR1] gi|125861623|gb|ABN56812.1| Radical SAM domain protein [Methanoculleus marisnigri JR1] Length = 349 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 6/90 (6%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L S R + +C C D G + + LI++ G +L+GG Sbjct: 15 LISWNVTYRCNLRCAHCYMD--AGDGGGALELSTSEAKMLIDQVKQAG---SPVLILSGG 69 Query: 94 EPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 EPLL+ D+ + + +RG +A+ TNGT+ Sbjct: 70 EPLLRDDIFEIAEYGTQRGLRMAIGTNGTL 99 >gi|91223182|ref|ZP_01258448.1| putative pyruvate formate-lyase 3 activating enzyme [Vibrio alginolyticus 12G01] gi|91191995|gb|EAS78258.1| putative pyruvate formate-lyase 3 activating enzyme [Vibrio alginolyticus 12G01] Length = 354 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 G D L D + + ++ +GGEPL+Q D+ L Q L+ A+E+ Sbjct: 155 GEEAKSDMLFDTLMKDKPFYDQSQGGVTFSGGEPLMQADLVAELAQRLHDNQVSTAIESC 214 Query: 120 GTIEP 124 + Sbjct: 215 MHVPW 219 >gi|46395076|gb|AAS91673.1| conserved hypothetical protein [Clostridium beijerinckii] Length = 327 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 33/131 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C + G N ++ LI++ + + + + Sbjct: 11 CNL-----------KCSHC---YRDSGKESQGELNTEEAKLLIDQ---IAKANFKIMIFS 53 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ-------------GIDWICVSPKA 137 GGEPL++ D+ LI +K G + TNGT+ + GI + PK Sbjct: 54 GGEPLMREDIFELINYASKAGLRPVLGTNGTLISREMAEKLKAAGISAIGISLDSLDPKK 113 Query: 138 GCDLKIKGGQE 148 K +G E Sbjct: 114 HN--KFRGNNE 122 >gi|57021069|gb|AAW32935.1| PFL activating enzyme [Chlamydomonas reinhardtii] Length = 336 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 63/186 (33%), Gaps = 34/186 (18%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC + +C FC DT G + + ++A I+ Sbjct: 115 VFV--QGC-----------AMRCLFCSNPDT----WTLKGGNKTSSKEIAADIKRVRNYL 157 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET--NGTIE-----PPQGIDWIC 132 + G ++GGE +LQ + Q ++ G V+T GT D + Sbjct: 158 KPRGG-ITISGGEAMLQPHFVSTVFQEVHALGLNTTVDTTGQGTKAGNWDVVLPHTDLVL 216 Query: 133 VSPKAGCDLKIKG--GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAIS 190 K +K + G + + + E I F + P +++ L I Sbjct: 217 FCIKHIDPIKYEALTGMKQRGALRFADQLAERKIPFYLRYVYI-PGYTDGVKDIDKL-IE 274 Query: 191 YCFQNP 196 +C Q P Sbjct: 275 WCKQQP 280 >gi|254521757|ref|ZP_05133812.1| molybdenum cofactor biosynthesis protein A [Stenotrophomonas sp. SKA14] gi|219719348|gb|EED37873.1| molybdenum cofactor biosynthesis protein A [Stenotrophomonas sp. SKA14] Length = 326 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 13/91 (14%) Query: 46 QCRFC--DTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 +C +C D G Q R+ VD++A L+ G + R LTGGEP L+ D+ Sbjct: 26 RCSYCLPD----GYQADGRPRFLQVDEIARLVRAFAALGMSKIR---LTGGEPSLRKDLD 78 Query: 103 LIQALNKR--GFE-IAVETNGTIEPPQGIDW 130 I A G +A+ TNGT+ P + W Sbjct: 79 EIIATVAAVPGIRKVAITTNGTLLPRRLPGW 109 >gi|154174160|ref|YP_001409198.1| radical SAM family protein [Campylobacter curvus 525.92] gi|112803526|gb|EAU00870.1| radical SAM [Campylobacter curvus 525.92] Length = 417 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 61/159 (38%), Gaps = 31/159 (19%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 CR +G + S + + C FC D + ++ Q+A+ I + Sbjct: 62 CR-TGVDTHSVYLSLKCNKNCYFCFNPNQD----DFKKDVKRKFAAKQIANKI----LKN 112 Query: 82 EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIA--VETNGTIEPPQGIDWICVSPKA 137 + ++ LTGGEPLL D L + +N+ I + TNGT+ ID K Sbjct: 113 NQNVKFVALTGGEPLLYKDDALEFFKIINESNTTIHKRLYTNGTL-----IDT-----KY 162 Query: 138 GCDLKIKGGQELKL---VFPQVNVSPENYIGFDFERFSL 173 LK G E++ + +N + + + + Sbjct: 163 LKKLKSSGLDEIRFSIKLEDSLNEQADIIEKIEDAKHYI 201 >gi|313896785|ref|ZP_07830333.1| molybdenum cofactor biosynthesis protein A [Selenomonas sp. oral taxon 137 str. F0430] gi|312974702|gb|EFR40169.1| molybdenum cofactor biosynthesis protein A [Selenomonas sp. oral taxon 137 str. F0430] Length = 332 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 24/113 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR+C G++ ++ +++ + R LT Sbjct: 20 CNL-----------RCRYC-MPAHGVKKLAHE--DILSYEEILRDVRALAALGIRKVRLT 65 Query: 92 GGEPLLQVDV-PLIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134 GGEPL++ D+ L++ L + G E +AV TNG + G+D + +S Sbjct: 66 GGEPLVRRDIVTLVRGLKEIPGIETVAVTTNGVLLGAMLDDLVAAGLDAVNLS 118 >gi|229031224|ref|ZP_04187231.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1271] gi|228730091|gb|EEL81064.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1271] Length = 338 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D + + + + D++ + G ++ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGPD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ LNK G E I + TNG++ +D + VS Sbjct: 75 GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFALDLYKAGLSRVTVS 126 >gi|119720086|ref|YP_920581.1| radical SAM domain-containing protein [Thermofilum pendens Hrk 5] gi|119525206|gb|ABL78578.1| Radical SAM domain protein [Thermofilum pendens Hrk 5] Length = 418 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C G + + +IE K+ R V T Sbjct: 74 CNL-----------RCAHC---HASAGRPYPGELDTEGAKRVIESLTTV--KDFRTLVFT 117 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPL++ D+ L + GF + TNG + Sbjct: 118 GGEPLVRKDIWELTRHAVDLGFGVVFATNGVL 149 >gi|85857996|ref|YP_460198.1| molybdenum cofactor biosynthesis protein A [Syntrophus aciditrophicus SB] gi|85721087|gb|ABC76030.1| molybdenum cofactor biosynthesis protein A [Syntrophus aciditrophicus SB] Length = 329 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 23/156 (14%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 N DR + +CR+C + +G +K + L D++ + R LT Sbjct: 13 NYLRISVTDRCNLRCRYC----MPEEGISKLDHREILSLEDIVRSVKVAAGVGIRKIRLT 68 Query: 92 GGEPLLQVDVP----LIQALNKRGFEIAVETNGTIEPP-------QGIDWICVSPKAGCD 140 GGEPL++ D+ I + + +IA+ TNG + G+D + S Sbjct: 69 GGEPLVRKDIARLIGFISEVPEID-DIAMTTNGVLFADMAEQLKAAGLDRVNFS------ 121 Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176 + ++ + + + +++ F L+P+ Sbjct: 122 MDTMVSEKFRYISRRDHLADVRKAIFKALELGLEPV 157 >gi|77461382|ref|YP_350889.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas fluorescens Pf0-1] gi|77385385|gb|ABA76898.1| coenzyme PQQ synthesis protein E [Pseudomonas fluorescens Pf0-1] Length = 379 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C +G + +Q + E G + + + Sbjct: 13 PLWLLAELTYRCPLQCPYCSNPLDF--AEQGKELSTEQWIKVFREAREMGAAQLGF---S 67 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI+ + GF + T+G Sbjct: 68 GGEPLVRQDLAELIREARQLGFYTNLITSG 97 >gi|328954834|ref|YP_004372167.1| glycyl-radical enzyme activating protein family [Coriobacterium glomerans PW2] gi|328455158|gb|AEB06352.1| glycyl-radical enzyme activating protein family [Coriobacterium glomerans PW2] Length = 298 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 G + ++ ++ + + ++ G L+GGEPL+ + + L+ L+ + +ET Sbjct: 103 GRLRSAAEVCEICLKDDVFYQQSGGGVTLSGGEPLMWPEFCIELMNLLHSHSVDTCIET 161 >gi|309389587|gb|ADO77467.1| Radical SAM domain protein [Halanaerobium praevalens DSM 2228] Length = 391 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 8/97 (8%) Query: 28 RFS-GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R G + + + + C+ C ++ I+ K N + LI++ + + Sbjct: 32 RLGMG-PVIAWNINSQCNLNCKHCYSNSNQIK--KKTTLNTKEALKLIDQL---ADFKVP 85 Query: 87 YCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 +L+GGEPLL+ D+ LI+ R + + TNGT+ Sbjct: 86 VLLLSGGEPLLRKDLVKLIEKAKSRNLRVVISTNGTL 122 >gi|304313911|ref|YP_003849058.1| molybdopterin cofactor biosynthesis protein A [Methanothermobacter marburgensis str. Marburg] gi|313104133|sp|Q50746|MOAA_METTM RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|302587370|gb|ADL57745.1| predicted molybdopterin cofactor biosynthesis protein A [Methanothermobacter marburgensis str. Marburg] Length = 305 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 15/102 (14%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R + C +C + + + ++ G K+ R L+GGEPL++ D+ Sbjct: 21 RCNVSCIYC---HRDGILRSDEEMSPEDIENICRVASDLGVKKIR---LSGGEPLIRDDI 74 Query: 102 -PLIQALNKRGFE-IAVETNGT----IEPP---QGIDWICVS 134 +++ +N GF I++ TNGT + P G+D + VS Sbjct: 75 VEIVEKINSIGFRDISITTNGTLLEDLSVPLRDAGLDRVNVS 116 >gi|301155020|emb|CBW14483.1| unnamed protein product [Haemophilus parainfluenzae T3T1] Length = 57 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Query: 180 FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211 LE T L ++ KW+LS+QTHK IGI Sbjct: 25 LLETITQLGQLNLRANKLKWQLSLQTHKIIGIE 57 >gi|224541633|ref|ZP_03682172.1| hypothetical protein CATMIT_00805 [Catenibacterium mitsuokai DSM 15897] gi|224525424|gb|EEF94529.1| hypothetical protein CATMIT_00805 [Catenibacterium mitsuokai DSM 15897] Length = 372 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 13/92 (14%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN+ L+ ++ G + + ++ ++ E + +LT Sbjct: 35 CNMNCDMCYVHLT---------HKQLEEAGGRIHTGKEWLEIGKQMV---ENGTLFLLLT 82 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL D + L K G I + TN T+ Sbjct: 83 GGEPLLHPDFKEIYLGLKKMGIVITINTNATL 114 >gi|170700217|ref|ZP_02891233.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria IOP40-10] gi|170134850|gb|EDT03162.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria IOP40-10] Length = 370 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 36/161 (22%) Query: 28 RFSGCNLWSGREQ--DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF+ L R DR + +C +C D ++ + + +++ + + ++ Sbjct: 31 RFAR-PLRDLRISVTDRCNFRCVYCMPRDVFDKNYPFLPHS--ALLTHEEI-ERVARLFV 86 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------P 125 E +TGGEPLL+ ++ LI+ L + R ++ + TNG++ Sbjct: 87 AHGVEK--IRITGGEPLLRKNLEFLIERLARLTTHDGRPLDLTLTTNGSLLARKARALKD 144 Query: 126 QGIDWICVS--------PKAGCDLKIKGGQELKLVFPQVNV 158 G+ + VS K D L +F V Sbjct: 145 AGLTRVTVSLDALDDTLFKRMNDADFASADVLDGIFAAQAV 185 >gi|118576201|ref|YP_875944.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A] gi|118194722|gb|ABK77640.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A] Length = 554 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 15/142 (10%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY---NVDQLADLIEEQWITGEKEGRYCVL 90 L + +R C +C F +G +G ++DQ+ +++ G + Sbjct: 109 LANMIVTNRCDLTCWYC--FFYVKKGLEGAYMYEPSLDQVRAMMKTLRSERPIAGNSIQI 166 Query: 91 TGGEPLLQVDV-PLIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 TGGEP+L+ D+ +I+ + + G I + TNG + P+A D+++ G Sbjct: 167 TGGEPMLRTDITDIIKIMKEEGVDHIQMNTNGIRHA--------MDPEAARDVRLAGCNN 218 Query: 149 LKLVFPQVNVSPENYIGFDFER 170 L L F V ++ Sbjct: 219 LYLSFDGVTARTNPKNHWEIPH 240 >gi|325577286|ref|ZP_08147770.1| pyruvate formate-lyase activating enzyme [Haemophilus parainfluenzae ATCC 33392] gi|325160868|gb|EGC72989.1| pyruvate formate-lyase activating enzyme [Haemophilus parainfluenzae ATCC 33392] Length = 256 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G +V++L + Sbjct: 31 IRFILFMQGC-----------LMRCKYCHNRDT----WDLEGGREISVEELMKEVVSYRH 75 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A G ++TNG Sbjct: 76 FMNATGGGVTASGGEAVLQAEFVRDWFRACKAEGINTCLDTNG 118 >gi|313897031|ref|ZP_07830578.1| putative heme d1 biosynthesis radical SAM protein NirJ1 [Selenomonas sp. oral taxon 137 str. F0430] gi|312974478|gb|EFR39946.1| putative heme d1 biosynthesis radical SAM protein NirJ1 [Selenomonas sp. oral taxon 137 str. F0430] Length = 396 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +CR C ++ G K G ++ I+ + + Sbjct: 47 CNL-----------RCRHC---YMESDGQKYAGELTTEEAKRFID---GLADFRVPVLLF 89 Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +GGEPL++ D L RG + TNGT+ Sbjct: 90 SGGEPLIRPDFFELAAYARDRGVRPTLSTNGTL 122 >gi|57642080|ref|YP_184558.1| hypothetical protein TK2145 [Thermococcus kodakarensis KOD1] gi|57160404|dbj|BAD86334.1| hypothetical protein, conserved, radical SAM superfamily [Thermococcus kodakarensis KOD1] Length = 590 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 4/90 (4%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 NL + +R + C +C F +G ++Q+ ++ TG Sbjct: 139 NLLNIVLTNRCNLSCWYC--FFYAREGQPIYEPTLEQIRMMLRNAKKEHPIGANAVQFTG 196 Query: 93 GEPLLQVDV-PLIQALNKRGF-EIAVETNG 120 GEP L+ D+ +I+ + G+ + + T+G Sbjct: 197 GEPTLRDDLIEIIRIAKEEGYDHVQLNTDG 226 >gi|330979897|gb|EGH78197.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 389 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C + +G + +Q +++E G + + Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELSTEQWFKVMQEAREMGAAQ---IGFS 76 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI + GF + T+G Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSG 106 >gi|330954903|gb|EGH55163.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae Cit 7] Length = 389 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C + +G + +Q +++E G + + Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELSTEQWFKVMQEAREMGAAQ---IGFS 76 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI + GF + T+G Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSG 106 >gi|325291166|ref|YP_004267347.1| GTP cyclohydrolase subunit MoaA [Syntrophobotulus glycolicus DSM 8271] gi|324966567|gb|ADY57346.1| GTP cyclohydrolase subunit MoaA [Syntrophobotulus glycolicus DSM 8271] Length = 318 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 25/98 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + + +++++ ++ + G ++ R LT Sbjct: 20 CNL-----------RCKYCRPEAGIKKKAHEDILSLEEIENISKAAVEIGIRKIR---LT 65 Query: 92 GGEPL-----LQVDVPL--IQALNKRGFEIAVETNGTI 122 GGEPL LQ+ L I+ L G TNGT+ Sbjct: 66 GGEPLVRKGILQLITRLSRIKGLEDLGLT----TNGTL 99 >gi|309781163|ref|ZP_07675900.1| molybdenum cofactor biosynthesis protein A [Ralstonia sp. 5_7_47FAA] gi|308919984|gb|EFP65644.1| molybdenum cofactor biosynthesis protein A [Ralstonia sp. 5_7_47FAA] Length = 373 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 25/136 (18%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ ++ + + +++ + G ++ R LTGGE Sbjct: 52 DRCNFRCVYCMPKDVFDKDYRFLRHS--ELLSFEEIERMARLFIEHGVEKIR---LTGGE 106 Query: 95 PLLQVDVP-LIQALN----KRGFE--IAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ D+ L++ L G + + TNG + G+ + VS D Sbjct: 107 PLLRKDIERLVEKLARLTTAEGKPLDLTLTTNGALLARKAQSLKDAGLSRVTVSLDGIDD 166 Query: 141 LKIKGGQELKLVFPQV 156 + ++ +V Sbjct: 167 ATFRRMNDVDFAVSEV 182 >gi|259046654|ref|ZP_05737055.1| pyruvate formate-lyase 1-activating enzyme [Granulicatella adiacens ATCC 49175] gi|259036819|gb|EEW38074.1| pyruvate formate-lyase 1-activating enzyme [Granulicatella adiacens ATCC 49175] Length = 254 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 37/131 (28%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +C FC DT +G Sbjct: 13 TESFGSVDGPG---------IRFVTFMQGC-----------RMRCEFCHNPDTWNIG--- 49 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117 G +L D + ++G ++GGEPLLQ+D + + K G ++ Sbjct: 50 -GGHPITSQELLDQALQYRAFWGRKGG-VTVSGGEPLLQIDFLIDFFKRCKKAGVHTTLD 107 Query: 118 TNG---TIEPP 125 + G T + P Sbjct: 108 SCGMPFTYDEP 118 >gi|167570715|ref|ZP_02363589.1| molybdenum cofactor biosynthesis protein A [Burkholderia oklahomensis C6786] Length = 363 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 23/113 (20%) Query: 41 DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 DR + +C +C ++++ L G ++ R +TGGEP Sbjct: 38 DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 93 Query: 96 LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 LL+ ++ LI+ L + R +I + TNG++ G+ + VS Sbjct: 94 LLRKNIEFLIERLARMTTVAGRPLDITLTTNGSLLVRKAKSLRDAGLSRVTVS 146 >gi|167563554|ref|ZP_02356470.1| molybdenum cofactor biosynthesis protein A [Burkholderia oklahomensis EO147] Length = 370 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 23/113 (20%) Query: 41 DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 DR + +C +C ++++ L G ++ R +TGGEP Sbjct: 45 DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 100 Query: 96 LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 LL+ ++ LI+ L + R +I + TNG++ G+ + VS Sbjct: 101 LLRKNIEFLIERLARMTTVAGRPLDITLTTNGSLLVRKAKSLRDAGLSRVTVS 153 >gi|46579270|ref|YP_010078.1| radical SAM domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|120603169|ref|YP_967569.1| radical SAM domain-containing protein [Desulfovibrio vulgaris DP4] gi|46448684|gb|AAS95337.1| radical SAM domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|120563398|gb|ABM29142.1| Radical SAM domain protein [Desulfovibrio vulgaris DP4] gi|311233097|gb|ADP85951.1| Radical SAM domain protein [Desulfovibrio vulgaris RCH1] Length = 393 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 8/92 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 + R + +C C + + + +Q +I++ + + + Sbjct: 40 PVVVWNMTRRCNLKCVHC---YAKAVDPEGKDEISTEQAKTIIDDL---AQYGAPVMLFS 93 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122 GGEPL+ Q V L + RG + TNGT+ Sbjct: 94 GGEPLVRQDLVELAKHATGRGMRAVISTNGTL 125 >gi|66047898|ref|YP_237739.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. syringae B728a] gi|75500308|sp|Q4ZMC1|PQQE_PSEU2 RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|63258605|gb|AAY39701.1| Radical SAM [Pseudomonas syringae pv. syringae B728a] Length = 389 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C + +G + +Q +++E G + + Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELSTEQWFKVMQEAREMGAAQ---IGFS 76 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI + GF + T+G Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSG 106 >gi|302348233|ref|YP_003815871.1| radical SAM domain protein [Acidilobus saccharovorans 345-15] gi|302328645|gb|ADL18840.1| radical SAM domain protein [Acidilobus saccharovorans 345-15] Length = 260 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 50/147 (34%), Gaps = 24/147 (16%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GC+L C FC + + G Q + I I K L Sbjct: 50 GCDL-----------SCGFCWSWRFRDNISLGKFMTPQQAFNAI--YSIAKSKGFTQVRL 96 Query: 91 TGGEPLL--QVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 +G EP + + + LI+ ++RG +ETNG + I P DL Sbjct: 97 SGAEPTISRRHLLDLIELFDERGITFVLETNGLL--------IGNDPSYAKDLAAHPNVV 148 Query: 149 LKLVFPQVNVSP-ENYIGFDFERFSLQ 174 +++ F N G E F LQ Sbjct: 149 VRVSFKGTNAEEFHRLTGARAEFFELQ 175 >gi|212704786|ref|ZP_03312914.1| hypothetical protein DESPIG_02850 [Desulfovibrio piger ATCC 29098] gi|212671748|gb|EEB32231.1| hypothetical protein DESPIG_02850 [Desulfovibrio piger ATCC 29098] Length = 332 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119 G Y V + + +E + + G ++GGEPLLQ + L++ +R + +ET Sbjct: 133 GKPYTVAEALKVAQEDAMFYARSGGGMTISGGEPLLQSEFALNLLRLARERRVKTCIETC 192 Query: 120 GTIE 123 G + Sbjct: 193 GLVP 196 >gi|190574699|ref|YP_001972544.1| putative molybdenum cofactor biosynthesis protein A [Stenotrophomonas maltophilia K279a] gi|226707389|sp|B2FUM0|MOAA_STRMK RecName: Full=Molybdenum cofactor biosynthesis protein A gi|190012621|emb|CAQ46249.1| putative molybdenum cofactor biosynthesis protein A [Stenotrophomonas maltophilia K279a] Length = 326 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 13/91 (14%) Query: 46 QCRFC--DTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 +C +C D G Q R+ VD++A L+ G + R LTGGEP L+ D+ Sbjct: 26 RCSYCLPD----GYQADGRPRFLQVDEIARLVRAFAALGMSKIR---LTGGEPSLRKDLD 78 Query: 103 LIQALNKR--GFE-IAVETNGTIEPPQGIDW 130 I A G +A+ TNGT+ P + W Sbjct: 79 EIIATVAAVPGIRKVAITTNGTLLPRRLPGW 109 >gi|299770205|ref|YP_003732231.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter sp. DR1] gi|298700293|gb|ADI90858.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter sp. DR1] Length = 384 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 59/174 (33%), Gaps = 20/174 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C D+ + + D+ ++ G + + Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFDVFDQARQMGAVQLGF-- 61 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140 +GGEPL+ Q L+ +++GF + T+G G+D I VS +A Sbjct: 62 -SGGEPLVRQDLEQLVAHAHQQGFYTNLITSGMGLTEQRIADLKQAGLDHIQVSFQASDP 120 Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 + K F Q +D+ L + + I C + Sbjct: 121 VVNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIEQIIELCLE 173 >gi|269960306|ref|ZP_06174680.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834917|gb|EEZ89002.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 313 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 G D L D + + ++ +GGEPL+Q D+ L Q L+ A+E+ Sbjct: 114 GEEAKSDMLFDTLMKDKPFYDQSQGGVTFSGGEPLMQADLVAELAQRLHDNQVSTAIESC 173 Query: 120 GTIEP 124 + Sbjct: 174 MHVPW 178 >gi|206896250|ref|YP_002247794.1| radical SAM domain protein [Coprothermobacter proteolyticus DSM 5265] gi|206738867|gb|ACI17945.1| radical SAM domain protein [Coprothermobacter proteolyticus DSM 5265] Length = 312 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 13/103 (12%) Query: 44 SAQCRFCD---TDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 S C +C T + ++ T + D++ +E T + ++ GEP L Sbjct: 27 SYNCVYCQVGRTLHMQVKRTLYSNPSEVFDEVKKKVERIGETQQNVDYISIVPDGEPTLD 86 Query: 99 VDV-PLIQALNKRGFEIAVETNGTIEPPQGI-------DWICV 133 + LI+ L G +AV TN ++ + + DW+ V Sbjct: 87 SSLGELIERLKDLGLPVAVITNSSLTWDKSVQEDLKKADWVSV 129 >gi|171317149|ref|ZP_02906351.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria MEX-5] gi|171097716|gb|EDT42546.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria MEX-5] Length = 370 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 36/161 (22%) Query: 28 RFSGCNLWSGREQ--DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF+ L R DR + +C +C D ++ + + +++ + + ++ Sbjct: 31 RFAR-PLHDLRISVTDRCNFRCVYCMPRDVFDKNYPFLPHS--ALLTHEEI-ERVARLFV 86 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------P 125 E +TGGEPLL+ ++ LI+ L + R ++ + TNG++ Sbjct: 87 AHGVEK--IRITGGEPLLRKNLEFLIERLARLTTHEGRPLDLTLTTNGSLLARKARALKD 144 Query: 126 QGIDWICVS--------PKAGCDLKIKGGQELKLVFPQVNV 158 G+ + VS K D L +F V Sbjct: 145 AGLTRVTVSLDALDDTLFKRMNDADFASADVLDGIFAAQAV 185 >gi|293608090|ref|ZP_06690393.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|130795|sp|P07782|PQQE_ACICA RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Coenzyme PQQ synthesis protein III; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|38745|emb|CAA29756.1| III protein [Acinetobacter calcoaceticus] gi|292828663|gb|EFF87025.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 384 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 59/174 (33%), Gaps = 20/174 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C D+ + + D+ ++ G + + Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFDVFDQARQMGAVQLGF-- 61 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140 +GGEPL+ Q L+ +++GF + T+G G+D I VS +A Sbjct: 62 -SGGEPLVRQDLEQLVAHAHQQGFYTNLITSGMGLTEQRIADLKQAGLDHIQVSFQASDP 120 Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 + K F Q +D+ L + + I C + Sbjct: 121 VVNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIEQIIELCLE 173 >gi|307710845|ref|ZP_07647272.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis SK321] gi|307617290|gb|EFN96463.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis SK321] Length = 264 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 26/118 (22%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G VF GC++ +C++C DT + Sbjct: 18 TESFGSVDGPGIRFI----VF--LQGCHM-----------RCQYCHNPDT-WAMESNKSR 59 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 R D L + + + G K G ++GGE LLQ+D + L ++G ++T Sbjct: 60 ERTVDDVLTEALRYRGFWGNKGG--ITVSGGEALLQIDFLIALFTKAKEQGIHCTLDT 115 >gi|304406819|ref|ZP_07388474.1| molybdenum cofactor biosynthesis protein A [Paenibacillus curdlanolyticus YK9] gi|304344352|gb|EFM10191.1| molybdenum cofactor biosynthesis protein A [Paenibacillus curdlanolyticus YK9] Length = 333 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 8/92 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 N DR + +C +C G+Q T + D + +L++ G + R +T Sbjct: 13 NYLRISVTDRCNLRCVYC-MPEEGVQFTDTSNLLSYDHIVELVQSAASLGVTKLR---IT 68 Query: 92 GGEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 GGEPL++ + LI L++ G IA+ TNG Sbjct: 69 GGEPLVRPGLDGLISRLSRIPGISDIALTTNG 100 >gi|302186015|ref|ZP_07262688.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. syringae 642] Length = 389 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C + +G + +Q +++E G + + Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELSTEQWFKVMQEAREMGAAQ---IGFS 76 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI + GF + T+G Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSG 106 >gi|302334990|ref|YP_003800197.1| Radical SAM domain protein [Olsenella uli DSM 7084] gi|301318830|gb|ADK67317.1| Radical SAM domain protein [Olsenella uli DSM 7084] Length = 297 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 44/123 (35%), Gaps = 15/123 (12%) Query: 30 SGCN-----LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD-QLADLIEEQWITGEK 83 +GC L GR A C CD G R + +L D E I Sbjct: 72 AGCPSGALSLREGR-VVWDEATCIGCD----QCIHVCGHRASPKVRLLDAGEVFGIVRGY 126 Query: 84 EG--RYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139 R +GGE +L L + G E ++TNGTI+ D + V+ Sbjct: 127 VPFIRGVTTSGGECMLHPRFLKGLFERCRGIGLETLIDTNGTIDFEGHEDLLAVANGVML 186 Query: 140 DLK 142 D+K Sbjct: 187 DVK 189 >gi|283782364|ref|YP_003373119.1| radical SAM domain-containing protein [Pirellula staleyi DSM 6068] gi|283440817|gb|ADB19259.1| Radical SAM domain protein [Pirellula staleyi DSM 6068] Length = 518 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 15/104 (14%) Query: 30 SGCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 GC L G + C C + GG++ L ++ Sbjct: 82 QGCPLDCGLCTEHEQHTCVGLVEVTSSCNLTCPMCYAS--SAPGGKHTSVDDCKLAIDRL 139 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQ--ALNKRGFEIAVETNG 120 + E C L+GGEP + ++ I AL + + + TNG Sbjct: 140 VAVEGRADVCQLSGGEPTIHPELETIVDYALAQPIDYVMINTNG 183 >gi|73669299|ref|YP_305314.1| metallo cofactor biosynthesis protein [Methanosarcina barkeri str. Fusaro] gi|72396461|gb|AAZ70734.1| metallo cofactor biosynthesis protein [Methanosarcina barkeri str. Fusaro] Length = 399 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + D +F T+ G+ +D LA + + Sbjct: 50 CNLKCVHCYAQAK------DIEFENELSTEEGKALIDDLA----------SFGSPVILFS 93 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GGEP ++ D+P L ++G + TNGT+ Sbjct: 94 GGEPTMRKDLPELAAYAREKGMRAVISTNGTL 125 >gi|15903833|ref|NP_359383.1| pyruvate-formate lyase activating enzyme [Streptococcus pneumoniae R6] gi|116516256|ref|YP_817196.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae D39] gi|148985556|ref|ZP_01818745.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae SP3-BS71] gi|148993163|ref|ZP_01822729.1| purine operon repressor [Streptococcus pneumoniae SP9-BS68] gi|148998506|ref|ZP_01825947.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae SP11-BS70] gi|149007451|ref|ZP_01831094.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae SP18-BS74] gi|149012435|ref|ZP_01833466.1| purine operon repressor [Streptococcus pneumoniae SP19-BS75] gi|168484275|ref|ZP_02709227.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae CDC1873-00] gi|168487114|ref|ZP_02711622.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae CDC1087-00] gi|168489981|ref|ZP_02714180.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae SP195] gi|168492049|ref|ZP_02716192.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae CDC0288-04] gi|168576624|ref|ZP_02722490.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae MLV-016] gi|182684911|ref|YP_001836658.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae CGSP14] gi|225857550|ref|YP_002739061.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae P1031] gi|225859732|ref|YP_002741242.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae 70585] gi|225861794|ref|YP_002743303.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae Taiwan19F-14] gi|298230173|ref|ZP_06963854.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254779|ref|ZP_06978365.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503747|ref|YP_003725687.1| pyruvate-formate lyase activating enzyme [Streptococcus pneumoniae TCH8431/19A] gi|307068585|ref|YP_003877551.1| pyruvate-formate lyase-activating enzyme [Streptococcus pneumoniae AP200] gi|307128175|ref|YP_003880206.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae 670-6B] gi|307707661|ref|ZP_07644141.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis NCTC 12261] gi|307709730|ref|ZP_07646181.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis SK564] gi|322377603|ref|ZP_08052093.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sp. M334] gi|15459475|gb|AAL00594.1| Pyruvate-formate lyase activating enzyme [Streptococcus pneumoniae R6] gi|116076832|gb|ABJ54552.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae D39] gi|147755699|gb|EDK62745.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae SP11-BS70] gi|147761023|gb|EDK67992.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae SP18-BS74] gi|147763491|gb|EDK70427.1| purine operon repressor [Streptococcus pneumoniae SP19-BS75] gi|147922276|gb|EDK73397.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae SP3-BS71] gi|147928137|gb|EDK79155.1| purine operon repressor [Streptococcus pneumoniae SP9-BS68] gi|172042468|gb|EDT50514.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae CDC1873-00] gi|182630245|gb|ACB91193.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae CGSP14] gi|183569969|gb|EDT90497.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae CDC1087-00] gi|183571602|gb|EDT92130.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae SP195] gi|183573670|gb|EDT94198.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae CDC0288-04] gi|183577629|gb|EDT98157.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae MLV-016] gi|225721531|gb|ACO17385.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae 70585] gi|225725207|gb|ACO21059.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae P1031] gi|225726839|gb|ACO22690.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae Taiwan19F-14] gi|298239342|gb|ADI70473.1| pyruvate-formate lyase activating enzyme [Streptococcus pneumoniae TCH8431/19A] gi|301794919|emb|CBW37380.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae INV104] gi|301800738|emb|CBW33386.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae OXC141] gi|306410122|gb|ADM85549.1| Pyruvate-formate lyase-activating enzyme [Streptococcus pneumoniae AP200] gi|306485237|gb|ADM92106.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae 670-6B] gi|307616273|gb|EFN95466.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis NCTC 12261] gi|307619432|gb|EFN98557.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis SK564] gi|321281368|gb|EFX58378.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sp. M334] gi|327389141|gb|EGE87487.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae GA04375] gi|332071954|gb|EGI82442.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae GA17545] gi|332072058|gb|EGI82545.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae GA17570] gi|332072162|gb|EGI82648.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae GA41301] Length = 264 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 26/118 (22%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G VF GC++ +C++C DT + Sbjct: 18 TESFGSVDGPGIRFI----VF--LQGCHM-----------RCQYCHNPDT-WAMESNKSR 59 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 R D L + + + G K G ++GGE LLQ+D + L ++G ++T Sbjct: 60 ERTVDDVLTEALRYRGFWGNKGG--ITVSGGEALLQIDFLIALFTKAKEQGIHCTLDT 115 >gi|89895755|ref|YP_519242.1| putative pyruvate-formate lyase-activating enzyme [Desulfitobacterium hafniense Y51] gi|89335203|dbj|BAE84798.1| putative pyruvate-formate lyase-activating enzyme [Desulfitobacterium hafniense Y51] Length = 288 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 8/136 (5%) Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123 +V++ ++I E G ++GGEP+ Q D + L + + G+ +A++T+G Sbjct: 95 SVEECMEVIRHDKKYYENSGGGVTISGGEPMSQFDFCMALAKTCKEEGYHVALDTSGYAP 154 Query: 124 PPQGIDWICVSPKAGCDLKI---KGGQELKLVFPQVNVSPENYIGFDFERFSL-QPMDGP 179 Q +D + DLK + L F +V + + RF + P+ Sbjct: 155 TKQFLDILPYIDLFLYDLKHMDSERCHSLVGAFNEVILDNAVMLSKVGARFQIRIPIIPH 214 Query: 180 FL--EENTNLAISYCF 193 E+N A ++C Sbjct: 215 LNDSEQNIRAAAAFCL 230 >gi|32363221|sp|P59748|PQQE_ENTIT RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|30841335|gb|AAP34382.1| PqqE [Kluyvera intermedia] Length = 374 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C + +Q ++ + G + + + Sbjct: 10 PLWLLAELTYRCPLQCPYCSNPLDF--SQQKKELTTEQWIEVFRQARAMGSVQLGF---S 64 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 GGEPL + D+P LI+A GF + T+G Sbjct: 65 GGEPLTRKDLPELIRAARDLGFYTNLITSG 94 >gi|90424475|ref|YP_532845.1| pyruvate formate-lyase activating [Rhodopseudomonas palustris BisB18] gi|90106489|gb|ABD88526.1| Pyruvate formate-lyase activating [Rhodopseudomonas palustris BisB18] Length = 267 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 14/94 (14%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 +GC +C++C + D L D+ G Sbjct: 51 LAGC-----------LLRCQYCHNPDSWHMHHGKPSNSRDVLRDIAAYTKFLMHAHGG-V 98 Query: 89 VLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 L+GGEPL+Q D +++ + G A++T G Sbjct: 99 TLSGGEPLVQPDFTHAVLRGCKEMGLHTALDTAG 132 >gi|330502826|ref|YP_004379695.1| molybdenum cofactor biosynthesis protein A [Pseudomonas mendocina NK-01] gi|328917112|gb|AEB57943.1| molybdenum cofactor biosynthesis protein A [Pseudomonas mendocina NK-01] Length = 331 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 13/87 (14%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F + ++++L + + G + R +TGGEPL+ Sbjct: 23 DRCDFRCTYCMSEDMQFA----PRAQILSLEELYAVADTFIGLGVRRIR---ITGGEPLV 75 Query: 98 -QVDVPLIQALNKRGF--EIAVETNGT 121 + + L+Q L R ++A+ TNG+ Sbjct: 76 RKNLLSLLQRLGARDELDDLAITTNGS 102 >gi|307353427|ref|YP_003894478.1| molybdenum cofactor biosynthesis protein A [Methanoplanus petrolearius DSM 11571] gi|307156660|gb|ADN36040.1| molybdenum cofactor biosynthesis protein A [Methanoplanus petrolearius DSM 11571] Length = 294 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 17/91 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + GG + + L ++ + LT Sbjct: 23 CNL-----------KCSYC---HREGEKKSGGEISKEDLREIFS---VAELFNINSVKLT 65 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 GGEPLL+ D+ I ++ + ++ TNGT+ Sbjct: 66 GGEPLLRKDICEIISMIPESMQSSLTTNGTL 96 >gi|288935351|ref|YP_003439410.1| coenzyme PQQ biosynthesis protein E [Klebsiella variicola At-22] gi|288890060|gb|ADC58378.1| coenzyme PQQ biosynthesis protein E [Klebsiella variicola At-22] Length = 380 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF + +Q ++ + G + + Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFARQEKE----LTTEQWIEVFRQARAMGSVQLGF-- 64 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL + D+P LI+A GF + T+G Sbjct: 65 -SGGEPLTRKDLPELIRAARDLGFYTNLITSG 95 >gi|153832284|ref|ZP_01984951.1| benzylsuccinate synthase activating enzyme [Vibrio harveyi HY01] gi|148871595|gb|EDL70450.1| benzylsuccinate synthase activating enzyme [Vibrio harveyi HY01] Length = 313 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 G D L D + + ++ +GGEPL+Q D+ L Q L+ A+E+ Sbjct: 114 GEEAKSDMLFDTLMKDKPFYDQSQGGVTFSGGEPLMQADLVAELAQRLHDNQVSTAIESC 173 Query: 120 GTIEP 124 + Sbjct: 174 MHVPW 178 >gi|15901799|ref|NP_346403.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae TIGR4] gi|111658863|ref|ZP_01409484.1| hypothetical protein SpneT_02000034 [Streptococcus pneumoniae TIGR4] gi|148989976|ref|ZP_01821251.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae SP6-BS73] gi|149003635|ref|ZP_01828500.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae SP14-BS69] gi|169833821|ref|YP_001695330.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae Hungary19A-6] gi|194397459|ref|YP_002038559.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae G54] gi|225855466|ref|YP_002736978.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae JJA] gi|237650994|ref|ZP_04525246.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae CCRI 1974] gi|237822552|ref|ZP_04598397.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae CCRI 1974M2] gi|303254100|ref|ZP_07340215.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae BS455] gi|303260349|ref|ZP_07346319.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae SP-BS293] gi|303262497|ref|ZP_07348439.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae SP14-BS292] gi|303265128|ref|ZP_07351041.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae BS397] gi|303266010|ref|ZP_07351905.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae BS457] gi|303268058|ref|ZP_07353859.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae BS458] gi|14973483|gb|AAK76043.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae TIGR4] gi|147758367|gb|EDK65367.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae SP14-BS69] gi|147924636|gb|EDK75722.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae SP6-BS73] gi|168996323|gb|ACA36935.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae Hungary19A-6] gi|194357126|gb|ACF55574.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae G54] gi|225724182|gb|ACO20035.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae JJA] gi|301802654|emb|CBW35420.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae INV200] gi|302598933|gb|EFL65964.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae BS455] gi|302636397|gb|EFL66890.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae SP14-BS292] gi|302638515|gb|EFL68980.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae SP-BS293] gi|302642418|gb|EFL72764.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae BS458] gi|302644451|gb|EFL74703.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae BS457] gi|302645345|gb|EFL75579.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae BS397] Length = 264 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 26/118 (22%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G VF GC++ +C++C DT + Sbjct: 18 TESFGSVDGPGIRFI----VF--LQGCHM-----------RCQYCHNPDT-WAMESNKSR 59 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 R D L + + + G K G ++GGE LLQ+D + L ++G ++T Sbjct: 60 ERTVDDVLTEALRYRGFWGNKGG--ITVSGGEALLQIDFLIALFTKAKEQGIHCTLDT 115 >gi|328766119|gb|EGF76180.1| hypothetical protein BATDEDRAFT_28746 [Batrachochytrium dendrobatidis JAM81] Length = 1450 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D F+ K + +++ L + G ++ R LTG Sbjct: 1135 DRCNFRCTYCMPKEIFGRDFVFM----PKDQLLSFEEIERLAKNFVELGIRKIR---LTG 1187 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134 GEPLL+ D+P LI+ L + + E IA+ TNG++ G+D I VS Sbjct: 1188 GEPLLRRDLPILIERLTRMKDLEDIALTTNGSLLGALASKLKDAGLDRINVS 1239 >gi|229020835|ref|ZP_04177544.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1273] gi|228740460|gb|EEL90749.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1273] Length = 307 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 21/150 (14%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-RGFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ D+P LIQ LN+ G E I + Sbjct: 14 SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRKDLPELIQRLNEIEGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVSPKAGCDLKIKGGQ----ELKLVFPQVNVSPENYIG 165 TNG++ D + VS + + + ++K V + + E + Sbjct: 71 TTNGSLLKKFAPDLYKAGLSRVTVSLDSLNEERFSYLNGNRSKVKTVLAGIQAAAEAGMK 130 Query: 166 FDFERFSLQPMDGPFLEENTNLAISYCFQN 195 +Q G ++ +A Y +N Sbjct: 131 IKM-NMVVQ--KGKNEQDIVQMA-EYFKEN 156 >gi|206577759|ref|YP_002238372.1| coenzyme PQQ biosynthesis protein E [Klebsiella pneumoniae 342] gi|290509402|ref|ZP_06548773.1| coenzyme PQQ biosynthesis protein E [Klebsiella sp. 1_1_55] gi|226704991|sp|B5XX58|PQQE_KLEP3 RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|206566817|gb|ACI08593.1| coenzyme PQQ biosynthesis protein E [Klebsiella pneumoniae 342] gi|289778796|gb|EFD86793.1| coenzyme PQQ biosynthesis protein E [Klebsiella sp. 1_1_55] Length = 380 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF + +Q ++ + G + + Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFARQEKE----LTTEQWIEVFRQARAMGSVQLGF-- 64 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL + D+P LI+A GF + T+G Sbjct: 65 -SGGEPLTRKDLPELIRAARDLGFYTNLITSG 95 >gi|149021926|ref|ZP_01835913.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae SP23-BS72] gi|168494783|ref|ZP_02718926.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae CDC3059-06] gi|221232701|ref|YP_002511855.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae ATCC 700669] gi|147929964|gb|EDK80952.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae SP23-BS72] gi|183575346|gb|EDT95874.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pneumoniae CDC3059-06] gi|220675163|emb|CAR69747.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae ATCC 700669] Length = 264 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 26/118 (22%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G VF GC++ +C++C DT + Sbjct: 18 TESFGSVDGPGIRFI----VF--LQGCHM-----------RCQYCHNPDT-WAMESNKSR 59 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 R D L + + + G K G ++GGE LLQ+D + L ++G ++T Sbjct: 60 ERTVDDVLTEALRYRGFWGNKGG--ITVSGGEALLQIDFLIALFTKAKEQGIHCTLDT 115 >gi|227830742|ref|YP_002832522.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus L.S.2.15] gi|229579636|ref|YP_002838035.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus Y.G.57.14] gi|284998255|ref|YP_003420023.1| putative molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus L.D.8.5] gi|259495869|sp|C3MR64|MOAA_SULIL RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|259495872|sp|C3N7B9|MOAA_SULIY RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|227457190|gb|ACP35877.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus L.S.2.15] gi|228010351|gb|ACP46113.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus Y.G.57.14] gi|284446151|gb|ADB87653.1| putative molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus L.D.8.5] Length = 308 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 15/98 (15%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104 +C FC ++G +G Y + D++ + + LTGGEP L+ D+ ++ Sbjct: 23 ECFFC-----HMEGEEGDNY-ILSKEDILLVAKVAKNFDINSVKLTGGEPTLRRDLVEIV 76 Query: 105 QALNKRGFE-IAVETNGTIEPP-------QGIDWICVS 134 + L + G+ +++ TNG + G+D I VS Sbjct: 77 RGLKQLGYRDVSMTTNGFLLKDLAYKLKLAGLDRINVS 114 >gi|116625682|ref|YP_827838.1| radical SAM family Fe-S protein [Candidatus Solibacter usitatus Ellin6076] gi|116228844|gb|ABJ87553.1| Fe-S protein, radical SAM family [Candidatus Solibacter usitatus Ellin6076] Length = 300 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 18/110 (16%) Query: 50 CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALN 108 CD + LAD+ E + V TGGEPL+ D+ L L Sbjct: 2 CDIWRLTDAEEIAAAELERHLADI-------ERLEVEWVVFTGGEPLMHSDLFRLAALLR 54 Query: 109 KRGFEIAVETNGTI------EPPQGIDWICVSPKAGCDLKIKGGQELKLV 152 +RG + + + G + +G D + VS D + E++ V Sbjct: 55 RRGIRVTILSTGLLLDRNAAAIVEGADEVIVS----LDGPARIHDEIRRV 100 >gi|330507065|ref|YP_004383493.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6] gi|328927873|gb|AEB67675.1| radical SAM domain protein [Methanosaeta concilii GP-6] Length = 386 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 9/96 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + R + C C D + + + +L D + I +LTG Sbjct: 40 PVVMWNLTRRCNLACSHCYMDAIPKEDDEMSLEEGMRLTDDLARMKI------PILILTG 93 Query: 93 GEPLLQVDVPLIQALNKR--GFEIAVETNGTIEPPQ 126 GEPL+ + A + R G + TNGT+ P+ Sbjct: 94 GEPLMSRNF-FSIAFHAREAGLRTVISTNGTLITPE 128 >gi|293402244|ref|ZP_06646382.1| radical SAM domain-containing protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304351|gb|EFE45602.1| radical SAM domain-containing protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 280 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 21/104 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC + R N+ + +I+E + + Sbjct: 14 CNL-----------ACSFC-----IQNQRQPRRMNIQEFTHVIQEVRSVTRHVYLHVL-- 55 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134 GEPL D+P +Q E+ + TNGT+ + +D +C S Sbjct: 56 -GEPLSHPDLPAFLQICKANDMEVILTTNGTL-LKKQVDALCAS 97 >gi|85858423|ref|YP_460625.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB] gi|85721514|gb|ABC76457.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB] Length = 397 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 8/92 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 + R + +C C + Q + ++IE+ + + Sbjct: 40 PVVVWNMTRRCNLRCIHC---YSSSQNIQYSDEMTTAEAEEMIEDL---AAFGCPVLLFS 93 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GGEPL++ D+P L Q RG + TNGT+ Sbjct: 94 GGEPLMREDLPELAQYAVSRGMRAVLSTNGTL 125 >gi|330508415|ref|YP_004384843.1| Radical SAM domain-containing protein [Methanosaeta concilii GP-6] gi|328929223|gb|AEB69025.1| Radical SAM domain protein [Methanosaeta concilii GP-6] Length = 349 Score = 43.1 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 18/105 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 SGCNL + Q+ + + G ++ A+ + E E Sbjct: 116 TSGCNLCCPQCQNWR----------YAFMDA--GELLTPEEAAERMTETKKQCGVE--RI 161 Query: 89 VLTGGEPLLQV--DVPLIQALNKRG--FEIAVETNGTIEPPQGID 129 ++GGE L + I+ L ++ I V+TNGTI ID Sbjct: 162 AISGGECTLNRPWLISFIRLLREQNPIARIHVDTNGTILTEDYID 206 >gi|301154949|emb|CBW14412.1| pyruvate formate lyase activating enzyme 1 [Haemophilus parainfluenzae T3T1] Length = 246 Score = 43.1 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G +V++L + Sbjct: 21 IRFILFMQGC-----------LMRCKYCHNRDT----WDLEGGREISVEELMKEVVSYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A G ++TNG Sbjct: 66 FMNATGGGVTASGGEAVLQAEFVRDWFRACKAEGINTCLDTNG 108 >gi|315231725|ref|YP_004072161.1| hypothetical protein TERMP_01964 [Thermococcus barophilus MP] gi|315184753|gb|ADT84938.1| hypothetical protein TERMP_01964 [Thermococcus barophilus MP] Length = 583 Score = 43.1 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 4/90 (4%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 NL + +R + C +C F +G ++Q+ ++ TG Sbjct: 139 NLLNIVLTNRCNLSCWYC--FFYAKEGQPIYEPTLEQIRMMLRNAKRENPIGATAVQFTG 196 Query: 93 GEPLL-QVDVPLIQALNKRGF-EIAVETNG 120 GEP L + + +I+ + G+ I + T+G Sbjct: 197 GEPTLREDLIEIIRIAKEEGYDHIQLNTDG 226 >gi|189462269|ref|ZP_03011054.1| hypothetical protein BACCOP_02955 [Bacteroides coprocola DSM 17136] gi|189431036|gb|EDV00021.1| hypothetical protein BACCOP_02955 [Bacteroides coprocola DSM 17136] Length = 299 Score = 43.1 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI-QALNKRGFEIAVETNG 120 + +++ + + + V+TGGEPL++ D+ +A++ +GF + TNG Sbjct: 1 MPKEDFLRVLDNIALHTDPHHVFVVITGGEPLMREDLEECGKAIHDKGFPWGMVTNG 57 >gi|52550485|gb|AAU84334.1| heme d1 biosynthesis protein [uncultured archaeon GZfos9D8] Length = 366 Score = 43.1 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 8/96 (8%) Query: 30 SGC-NLWSGREQDRLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 +GC + G ++ +C C I G ++ +IEE G + + Sbjct: 25 TGCFSYLPGEVVWAVTRRCNLKC--KHCSIAGEDPEELTTEEGFGIIEEAAKLGHVKFAF 82 Query: 88 CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 TGGEPLL+ D+ LI+ + ++ + TNGT+ Sbjct: 83 ---TGGEPLLREDIYDLIEYASSFDMQVVMATNGTL 115 >gi|78043007|ref|YP_359644.1| tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995122|gb|ABB14021.1| tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein [Carboxydothermus hydrogenoformans Z-2901] Length = 365 Score = 43.1 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 19/95 (20%) Query: 29 FSG-CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 SG CNL CR C + KGG ++E+ Sbjct: 25 LSGLCNL-----------NCRHC---YRNSWSYKGGLMERKTWEKVLEDAK--ALPLLSR 68 Query: 88 CVLTG-GEPLLQVDV-PLIQALNKRGFEIAVETNG 120 VL G GEPLL ++ +I + G ++++ TNG Sbjct: 69 IVLGGIGEPLLHPEIKEIITNIKAMGLKVSITTNG 103 >gi|312137371|ref|YP_004004708.1| gtp cyclohydrolase subunit moaa [Methanothermus fervidus DSM 2088] gi|311225090|gb|ADP77946.1| GTP cyclohydrolase subunit MoaA [Methanothermus fervidus DSM 2088] Length = 308 Score = 43.1 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 26/112 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C +GT Y + + ++ + E + +T Sbjct: 21 CNL-----------NCIYC-----HKEGTLPTNYEMSK-EEIYRICKVAKEFDINKVKIT 63 Query: 92 GGEPLLQVDV-PLIQALNKRGFE-IAVETNGTI-------EPPQGIDWICVS 134 GGEPL++ D+ +I ALN F+ I++ TNG G+D I VS Sbjct: 64 GGEPLIRKDIVEIISALNSLNFKDISMTTNGVYLKNYAYKLKKAGLDRINVS 115 >gi|160887003|ref|ZP_02068006.1| hypothetical protein BACOVA_05017 [Bacteroides ovatus ATCC 8483] gi|156107414|gb|EDO09159.1| hypothetical protein BACOVA_05017 [Bacteroides ovatus ATCC 8483] Length = 446 Score = 43.1 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 +C +C + GT + VD+ I + R L GGEPLL+ + +I Sbjct: 111 RCPYCFEKDIQKDGTAFTKEMVDKAYQAILQIAPDERLRSRSITLYGGEPLLKRNKNIIS 170 Query: 106 ALNKRGFEI 114 + ++G E+ Sbjct: 171 YIIEQGKEL 179 >gi|94313095|ref|YP_586304.1| putative hopanoid biosynthesis associated radical SAM protein [Cupriavidus metallidurans CH34] gi|93356947|gb|ABF11035.1| putative hopanoid biosynthesis associated radical SAM protein [Cupriavidus metallidurans CH34] Length = 388 Score = 43.1 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 22/120 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R +V + + ++E + Sbjct: 38 CNL-----------ACSGCGKIDY--PDPILNQRLSVQECLEAVDECG------APVVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEPLL D+P +++ + R + + TN + + ID SP + + G +E+ Sbjct: 79 AGGEPLLHKDMPEIVRGIIARKRFVYLCTN-ALLMEKKIDQYEPSPYFVWSIHLDGDREM 137 >gi|322434209|ref|YP_004216421.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9] gi|321161936|gb|ADW67641.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9] Length = 352 Score = 43.1 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 8/76 (10%) Query: 40 QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 + + +C CD Q ++ ++ G R VLTGGEPLL Sbjct: 34 HTQCNCRCVMCD----IWQRKDSRTMTAAEVTRHLDSFHALG---VRQVVLTGGEPLLNP 86 Query: 100 -DVPLIQALNKRGFEI 114 + L+ I Sbjct: 87 ALAAICDLLHTLDIRI 102 >gi|157369944|ref|YP_001477933.1| pyruvate formate lyase-activating enzyme 1 [Serratia proteamaculans 568] gi|157321708|gb|ABV40805.1| pyruvate formate-lyase activating enzyme [Serratia proteamaculans 568] Length = 246 Score = 43.1 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 56/187 (29%), Gaps = 50/187 (26%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G V++L Sbjct: 25 VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKDAVSYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI--------EPPQGIDWI 131 G +GGE +LQ + +A ++ G ++TNG + E D + Sbjct: 68 NASGGGVTASGGEAILQAEFVRDWFRACHEEGINTCLDTNGFVRRYDPVIDELLDATDLV 127 Query: 132 CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191 + K D Q V N+ +F R+ + N I Y Sbjct: 128 MLDLKQMND-----------DIHQNLVGVSNHRTLEFARY--------LAKRNQRTWIRY 168 Query: 192 CFQNPKW 198 P W Sbjct: 169 VVV-PGW 174 >gi|118431135|ref|NP_147386.2| hypothetical protein APE_0644.1 [Aeropyrum pernix K1] gi|116062459|dbj|BAA79615.2| conserved hypothetical protein [Aeropyrum pernix K1] Length = 327 Score = 43.1 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 16/103 (15%) Query: 31 GCNLWSGREQDRL------SAQCRFCDTDFV--GIQGTKGGRYNVDQLADLIEEQWITGE 82 GC+L + + C +C G V + + + E TG Sbjct: 4 GCDLCFPGRKAVVFVTGLCDDSCFYCPVSRAKLGRDVFYVNEVPVASVEEAVAEVLRTGA 63 Query: 83 KEGRYCVLTGGEPL--LQVDVPLIQALNK---RGFEIAVETNG 120 LTGG+PL L + + +AL RGF I + T+G Sbjct: 64 SGA---SLTGGDPLVALHRTLDVARALKSELGRGFHIHLYTSG 103 >gi|330507318|ref|YP_004383746.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6] gi|328928126|gb|AEB67928.1| radical SAM domain protein [Methanosaeta concilii GP-6] Length = 321 Score = 42.7 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 18/117 (15%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR+C G + D+ +E +L+ Sbjct: 12 CNL-----------SCRYC--RASASHEPDQGELDTDEAKRFVESIAPLK----PMLILS 54 Query: 92 GGEPLLQVDVPLIQALN-KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147 GGEPLL+ D+ I L G +++ +NGT+ + I S + + + G Sbjct: 55 GGEPLLRPDLFQIIRLAVSLGIRVSLASNGTLITSGLAEEIADSGVSRVSISLDGAD 111 >gi|325264807|ref|ZP_08131536.1| putative pyruvate formate-lyase 1 activating enzyme [Clostridium sp. D5] gi|324030099|gb|EGB91385.1| putative pyruvate formate-lyase 1 activating enzyme [Clostridium sp. D5] Length = 315 Score = 42.7 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 45/162 (27%), Gaps = 59/162 (36%) Query: 12 TLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------------QC-RFC-- 50 ++Q G G VF GC L + S +C FC Sbjct: 15 SIQDGPGVRT---TVF--LKGCPLSCQWCANPESQVFRSDIIHVPSTCVHCYRCVSFCTK 69 Query: 51 -----------------DT----------DFVGIQGTK---GGRYNVDQLADLIEEQWIT 80 DT + +G G VD++ D+I Sbjct: 70 GAVKLPDKIGDNPVFDHDTCVTCENQDVCEHACYEGAIEKVGKPMTVDEVMDVILHDEPF 129 Query: 81 GEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 G ++GGEPL+ L + A+ET G Sbjct: 130 FSNGGG-ITVSGGEPLMHPEFLEELFSECQENYIHTAIETCG 170 >gi|253575835|ref|ZP_04853170.1| pyruvate formate-lyase 1-activating enzyme [Paenibacillus sp. oral taxon 786 str. D14] gi|251844878|gb|EES72891.1| pyruvate formate-lyase 1-activating enzyme [Paenibacillus sp. oral taxon 786 str. D14] Length = 249 Score = 42.7 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 43/125 (34%), Gaps = 38/125 (30%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F T+ G G RF GC QC++C DT T Sbjct: 13 ETFGTVDGPG---------IRFVLFMQGC-----------LLQCQYCHNPDT----WSLT 48 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-----NKRGFEIA 115 +G V+++ IE G ++GGE LQ P + L + Sbjct: 49 EGKEMTVEEVLAEIEPYLNYYRTSGGGLTVSGGEATLQA--PFVTELFREVKKRWNLHTT 106 Query: 116 VETNG 120 ++TNG Sbjct: 107 LDTNG 111 >gi|204930301|ref|ZP_03221278.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320705|gb|EDZ05907.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 292 Score = 42.7 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 47/137 (34%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGR-----------EQDRLSAQCRFC-- 50 IF +L G+G VF F GC E R +C C Sbjct: 24 IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLSCTP 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G +D+L + + I G L+GGE L+Q Sbjct: 79 CLRDADECPSGAFERIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 138 Query: 104 IQALNKRGFEIAVETNG 120 +Q L + G A+ET G Sbjct: 139 LQRLRRWGVPCAIETAG 155 >gi|167031421|ref|YP_001666652.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas putida GB-1] gi|166857909|gb|ABY96316.1| coenzyme PQQ biosynthesis protein E [Pseudomonas putida GB-1] Length = 386 Score = 42.7 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 12/101 (11%) Query: 22 RVAVFCRFSGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 AV G LW E R QC +C +G + +Q ++ E Sbjct: 14 TPAV-----GLPLWLLAELTYRCPLQCPYCSNPLDF--AAQGQELSTEQWFKVMAEAREM 66 Query: 81 GEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 G + +GGEPL+ Q LI + G+ + T+G Sbjct: 67 GAAQ---IGFSGGEPLVRQDLAELIGEARRLGYYTNLITSG 104 >gi|254255532|ref|ZP_04948848.1| radical SAM domain protein [Burkholderia dolosa AUO158] gi|124901269|gb|EAY72019.1| radical SAM domain protein [Burkholderia dolosa AUO158] Length = 240 Score = 42.7 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 25/126 (19%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 GR+A VF SGC C +C + ++ D + + + Sbjct: 24 GRLACVVFV--SGCP-----------WHCHYCHNPHLRMRNRCADPAKWDAILAWLGTRA 70 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-----PQGIDWIC 132 + V GGEPL++ +P ++ GF IA+ T G I+WI Sbjct: 71 GLLDA----VVFCGGEPLVERHLPGMMAQARALGFSIALHTGGAYPDRLSQCLPLIEWIG 126 Query: 133 VSPKAG 138 KA Sbjct: 127 FDVKAP 132 >gi|118594757|ref|ZP_01552104.1| pyrroloquinoline quinone biosynthesis protein PqqE [Methylophilales bacterium HTCC2181] gi|118440535|gb|EAV47162.1| pyrroloquinoline quinone biosynthesis protein PqqE [Methylophilales bacterium HTCC2181] Length = 394 Score = 42.7 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 10/101 (9%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R C FC TD+ + ++ + G + Sbjct: 17 PLWLLAEITYRCPLHCAFCYNPTDY---DKHTQNELDTKSWLSVLNQARDLGAAQLG--- 70 Query: 90 LTGGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQGID 129 ++GGEPLL+ D+ +I + ++ G+ + T+G + ID Sbjct: 71 ISGGEPLLRDDIEIIVEEAHQLGYYSNLITSGVGLTDKRID 111 >gi|325996049|gb|ADZ51454.1| Molybdenum cofactor biosynthesis protein [Helicobacter pylori 2018] gi|325997644|gb|ADZ49852.1| Molybdenum cofactor biosynthesis protein A [Helicobacter pylori 2017] Length = 293 Score = 42.7 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 56/154 (36%), Gaps = 25/154 (16%) Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIA--VETN 119 +D + + ++ G K+ R +TGGEPLL+ I L+ E+A + TN Sbjct: 13 ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDEFIAKLHAYNKEVALVLSTN 69 Query: 120 GTI-------EPPQGIDWICV---SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169 G + G+ + V S K+ LKI LK + S + + Sbjct: 70 GFLLKKMVKGLKDAGLSRVNVSLDSLKSDRVLKISQKDALKNALEGIEESLKVGLKLKLN 129 Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQ 203 M G +E L + Y S+Q Sbjct: 130 TVV---MKGVNDDEILEL-LEYAKNR-----SIQ 154 >gi|317496852|ref|ZP_07955182.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae bacterium 5_1_63FAA] gi|316895864|gb|EFV18016.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae bacterium 5_1_63FAA] Length = 250 Score = 42.7 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 22/114 (19%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 RF GC +C++C + G + + L + Sbjct: 23 VRFIAFMQGC-----------RMRCKYCHNPETWQENC-GEDWQAEALLKRALRYRMYWG 70 Query: 83 KEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG---TIEPPQGIDWI 131 +G ++GGEPLLQ+ + + + G A++T+ T E P W+ Sbjct: 71 SDGG-ITVSGGEPLLQIEFLIEFFKLAKQEGIHTALDTSANPYTKEEPFHSKWL 123 >gi|152991853|ref|YP_001357574.1| hypothetical protein SUN_0257 [Sulfurovum sp. NBC37-1] gi|151423714|dbj|BAF71217.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 225 Score = 42.7 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 67/181 (37%), Gaps = 27/181 (14%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 A+F F+ CN+ +C +C + G + ++ ++ + Sbjct: 21 LAAIFW-FAKCNM-----------RCGYC---YNKDIVFGEGEISQEEAIAFLKSRVGLL 65 Query: 82 EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-------PPQGIDWICV 133 E VL+GGE L D+ + + + GF+I ++TNG + +D+I + Sbjct: 66 EG----VVLSGGEATLYSDLAGFCKKIKQLGFKIKLDTNGLNPEMIQELVEEKLVDYIAL 121 Query: 134 SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 KA + ++ ++ ++ F FE + D +EE + Sbjct: 122 DYKAPKEKYLEITKDKHFDRFSKTLNFLIQKQFPFEVRTTVHSDLLRVEEINRIIRDLVK 181 Query: 194 Q 194 + Sbjct: 182 R 182 >gi|124028102|ref|YP_001013422.1| Fe-S osidoreductase [Hyperthermus butylicus DSM 5456] gi|123978796|gb|ABM81077.1| predicted Fe-S osidoreductase [Hyperthermus butylicus DSM 5456] Length = 561 Score = 42.7 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 12/92 (13%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGG---RYNVDQLADLIEEQWITGEKEGRYCVL 90 L + +R C +C K G ++Q+ +I + G + Sbjct: 143 LANLVVTNRCDLSCWYC-----FFYAEKMGYVYEPTLEQIRMMIRQYAKEGVVMS--VQI 195 Query: 91 TGGEPLLQVDVP-LIQALNKRGFE-IAVETNG 120 TGGEP L+ D+P +I+ L + G I + T+G Sbjct: 196 TGGEPTLRPDLPEIIKLLKEEGVRHIQLNTHG 227 >gi|313899253|ref|ZP_07832769.1| putative pyruvate formate-lyase 1-activating enzyme [Clostridium sp. HGF2] gi|312955933|gb|EFR37585.1| putative pyruvate formate-lyase 1-activating enzyme [Clostridium sp. HGF2] Length = 304 Score = 42.7 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 3/62 (4%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQALNKRGFEIAVET 118 G +Y++ +L ++ + E+ G L+GGE + Q L + L +G+ +A++T Sbjct: 104 GKQYSIKELMTIVNKDAHFYEESGGGVTLSGGEVMTQDIDYLEELCRQLKDKGYNVAIDT 163 Query: 119 NG 120 G Sbjct: 164 CG 165 >gi|295090758|emb|CBK76865.1| molybdenum cofactor biosynthesis protein A, bacterial [Clostridium cf. saccharolyticum K10] Length = 332 Score = 42.7 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 15/105 (14%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR S +CR+C G+ T ++L + E G + +TGGEPLL+ Sbjct: 18 DRCSLRCRYC-MPKEGVPLTAHENILTYEELLLVAEASVGLGIDRFK---ITGGEPLLRK 73 Query: 100 DVP-LIQALNKRG--FEIAVETNG-------TIEPPQGIDWICVS 134 D P I+ L ++ + TNG G+D + VS Sbjct: 74 DCPDFIRRLKALPGVRQVTLTTNGLLLPEHLEELLSAGLDGVNVS 118 >gi|293369361|ref|ZP_06615946.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f] gi|292635528|gb|EFF54035.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f] Length = 394 Score = 42.7 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 +C +C + GT + VD+ I + R L GGEPLL+ + +I Sbjct: 59 RCPYCFEKDIQKDGTAFTKEMVDKAYQAILQIAPDERLRSRSITLYGGEPLLKRNKNIIS 118 Query: 106 ALNKRGFEI 114 + ++G E+ Sbjct: 119 YIIEQGKEL 127 >gi|268325532|emb|CBH39120.1| conserved hypothetical protein radical SAM superfamily [uncultured archaeon] Length = 342 Score = 42.7 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 19/98 (19%) Query: 25 VFCRFSG-CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 VFC + CNL C+ C T+ + ++L + ++ + Sbjct: 10 VFCELTNACNL-----------NCKHCLTE---SSKPLPDELSTNELYSVFQQL---ADY 52 Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 Y LTGGEPLL+ D ++ LN+ F+I++ +NG Sbjct: 53 GTEYVELTGGEPLLRKDFDKILDLLNRLDFQISICSNG 90 >gi|224437923|ref|ZP_03658865.1| radical SAM family protein [Helicobacter cinaedi CCUG 18818] gi|313144366|ref|ZP_07806559.1| pyruvate formate-lyase activating enzyme [Helicobacter cinaedi CCUG 18818] gi|313129397|gb|EFR47014.1| pyruvate formate-lyase activating enzyme [Helicobacter cinaedi CCUG 18818] Length = 363 Score = 42.7 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 19/92 (20%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 GCN +C FC D++G + + +VD A I + G K + Sbjct: 46 GGCN-----------HRCTFCGVDYMGYKSI---KIDVDVYARAIADMGRLGVKS---VM 88 Query: 90 LTG-GEPLLQVDVPLIQAL-NKRGFEIAVETN 119 G GEP L D+P + AL G ++ + TN Sbjct: 89 FAGEGEPFLHKDLPQMVALSKDSGVDVGITTN 120 >gi|313906551|ref|ZP_07839881.1| Radical SAM domain protein [Eubacterium cellulosolvens 6] gi|313468620|gb|EFR63992.1| Radical SAM domain protein [Eubacterium cellulosolvens 6] Length = 365 Score = 42.7 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 15/96 (15%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL S++ G +Y ++++E + +T Sbjct: 46 CNLECFHCGSSCSSR---------LDDGLPLEKYK-----EILDEVKDNFDISRLLLSIT 91 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ 126 GGEPLL+ D L++ +++GF + +NGT+ P+ Sbjct: 92 GGEPLLRPDFFELMEYAHRQGFRWGMTSNGTLITPE 127 >gi|253700238|ref|YP_003021427.1| radical SAM protein [Geobacter sp. M21] gi|251775088|gb|ACT17669.1| Radical SAM domain protein [Geobacter sp. M21] Length = 471 Score = 42.7 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 11/101 (10%) Query: 31 GCNLWSGREQDRLSAQCRF-------CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 GC G D C C+ G + D + I Sbjct: 76 GCPFDCGLCSDHRQLPCSVLLEVTDRCNMKCAVCFADAGPKGTEDPSLERISWLLERAMA 135 Query: 84 EGRYCVL--TGGEPLLQVDVP-LIQALNKRGFE-IAVETNG 120 C L +GGEP L+ D+P +++A + GF I V TNG Sbjct: 136 AAGACSLQLSGGEPTLRDDLPEIVEAARRIGFTFIQVNTNG 176 >gi|237730866|ref|ZP_04561347.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter sp. 30_2] gi|291085629|ref|ZP_06353548.2| pyruvate formate-lyase 1-activating enzyme [Citrobacter youngae ATCC 29220] gi|226906405|gb|EEH92323.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter sp. 30_2] gi|291070473|gb|EFE08582.1| pyruvate formate-lyase 1-activating enzyme [Citrobacter youngae ATCC 29220] Length = 255 Score = 42.7 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 33/97 (34%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G VD+L + G Sbjct: 36 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVDELMKEVVTYRHFMNASG 80 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 81 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 117 >gi|167765831|ref|ZP_02437884.1| hypothetical protein CLOSS21_00322 [Clostridium sp. SS2/1] gi|167712548|gb|EDS23127.1| hypothetical protein CLOSS21_00322 [Clostridium sp. SS2/1] Length = 250 Score = 42.7 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 22/114 (19%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 RF GC +C++C + G + + L + Sbjct: 23 VRFIAFMQGC-----------RMRCKYCHNPETWQENC-GEDWQAEALLKRALRYRMYWG 70 Query: 83 KEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG---TIEPPQGIDWI 131 +G ++GGEPLLQ+ + + + G A++T+ T E P W+ Sbjct: 71 SDGG-ITVSGGEPLLQIEFLIEFFKLAKQEGIHTALDTSANPYTKEEPFHSKWL 123 >gi|254506007|ref|ZP_05118152.1| pyruvate formate-lyase 2-activating enzyme [Vibrio parahaemolyticus 16] gi|219551230|gb|EED28210.1| pyruvate formate-lyase 2-activating enzyme [Vibrio parahaemolyticus 16] Length = 313 Score = 42.7 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 G D L D + + ++ +GGEPL+Q D+ L Q L+ A+E+ Sbjct: 114 GEEAKSDMLFDTLMKDKPFYDQSQGGVTFSGGEPLMQADLVAELAQRLHDNQVSTAIESC 173 Query: 120 GTIEP 124 + Sbjct: 174 MHVPW 178 >gi|257388031|ref|YP_003177804.1| radical SAM protein [Halomicrobium mukohataei DSM 12286] gi|257170338|gb|ACV48097.1| Radical SAM domain protein [Halomicrobium mukohataei DSM 12286] Length = 407 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL+ DT+ + T G+ +D LAD + Sbjct: 49 CNLYCDHCYAAA-------DTEVADGELSTAEGKAMLDGLAD----------YGVPVVLF 91 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 +GGEPL++ D+ LI ++RG + TNGT+ Sbjct: 92 SGGEPLVRDDLEELIAYADERGVRPVLSTNGTL 124 >gi|83590961|ref|YP_430970.1| GTP cyclohydrolase subunit MoaA [Moorella thermoacetica ATCC 39073] gi|123725642|sp|Q2RGL2|MOAA_MOOTA RecName: Full=Molybdenum cofactor biosynthesis protein A gi|83573875|gb|ABC20427.1| GTP cyclohydrolase subunit MoaA [Moorella thermoacetica ATCC 39073] Length = 323 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 6/91 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +CR+C G ++ +L ++ + LTG Sbjct: 10 NYLRIAITDRCNLRCRYC---MPATGVPLKGHEDILRLEEIATLARVAAGTGISRIRLTG 66 Query: 93 GEPLLQVD-VPLIQALNK-RGF-EIAVETNG 120 GEPL++ + V L++ L G EI++ TNG Sbjct: 67 GEPLVRKNVVTLVRELAAIPGLEEISLTTNG 97 >gi|125974195|ref|YP_001038105.1| radical SAM family protein [Clostridium thermocellum ATCC 27405] gi|125714420|gb|ABN52912.1| Radical SAM [Clostridium thermocellum ATCC 27405] Length = 330 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 20/99 (20%) Query: 32 CNLWSGREQDRLSAQ--CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 CNL + C G +L L+++ + Sbjct: 9 CNLRCLHCYNFSGENNICT-------------EGEMTDSELVALVKD---IASIKPLNVC 52 Query: 90 LTGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIEPPQ 126 GGEPLL+ D+ L I+ LN +++ TNG + P+ Sbjct: 53 FCGGEPLLRKDILLKCIKILNDEDIQVSFVTNGLLLTPE 91 >gi|46114368|ref|XP_383202.1| hypothetical protein FG03026.1 [Gibberella zeae PH-1] Length = 825 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 45/161 (27%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVG--IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 CNL C +C G +QG + G L+ + V Sbjct: 637 CNL-----------ACPWC---HNGPLVQGDRDG-------VSLLNVFKHLNSSSHKCLV 675 Query: 90 LTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 ++GGEP + +P ++ L G + +++NGT SP LK ++ Sbjct: 676 VSGGEPTIHKGLLPFLRILKNAGISVKLDSNGT------------SPDV---LKQVFAEK 720 Query: 149 L-KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 L V + + ENY ++ + LE + L Sbjct: 721 LVDFVAMDIKCALENYRRVTGKK-----IKPKLLETSIELI 756 >gi|229895828|ref|ZP_04510998.1| Pyruvate formate-lyase activating enzyme [Yersinia pestis Pestoides A] gi|229700751|gb|EEO88780.1| Pyruvate formate-lyase activating enzyme [Yersinia pestis Pestoides A] Length = 136 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G V++L Sbjct: 44 VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFM 86 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A +K G ++TNG Sbjct: 87 NASGGGVTASGGEAILQAEFVRDWFRACHKEGIHTCLDTNG 127 >gi|257388542|ref|YP_003178315.1| molybdenum cofactor biosynthesis protein A [Halomicrobium mukohataei DSM 12286] gi|257170849|gb|ACV48608.1| molybdenum cofactor biosynthesis protein A [Halomicrobium mukohataei DSM 12286] Length = 335 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 11/90 (12%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + C +C DT G + + D++ D +E + + TGGE Sbjct: 19 DRCNFDCVYCHNEGLGDTR--GPLAAQDDELSTDRVVDFLE---VAADLGVDSVKFTGGE 73 Query: 95 PLLQVDVPLIQALNKRGFEIAVETNGTIEP 124 PLL+ D+ I +++ TNGT P Sbjct: 74 PLLREDLAEIVERTPDEMAVSLTTNGTYLP 103 >gi|241662581|ref|YP_002980941.1| molybdenum cofactor biosynthesis protein A [Ralstonia pickettii 12D] gi|240864608|gb|ACS62269.1| molybdenum cofactor biosynthesis protein A [Ralstonia pickettii 12D] Length = 373 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 25/136 (18%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ ++ + + +++ + G ++ R LTGGE Sbjct: 52 DRCNFRCVYCMPKDVFDKDYRFLRHS--ELLSFEEIERMARLFIEHGVEKIR---LTGGE 106 Query: 95 PLLQVDVP-LIQALN----KRGFE--IAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ D+ L++ L G + + TNG + G+ + VS D Sbjct: 107 PLLRKDIERLVEMLARLTTAEGKPLDLTLTTNGALLARKAQSLKDAGLSRVTVSLDGIDD 166 Query: 141 LKIKGGQELKLVFPQV 156 + ++ +V Sbjct: 167 ATFRRMNDVDFAVSEV 182 >gi|83717596|ref|YP_439900.1| radical SAM domain-containing protein [Burkholderia thailandensis E264] gi|257143059|ref|ZP_05591321.1| radical SAM domain-containing protein [Burkholderia thailandensis E264] gi|83651421|gb|ABC35485.1| radical SAM domain protein protein [Burkholderia thailandensis E264] Length = 516 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 24/116 (20%) Query: 26 FCRF---SGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTKGGRYNVDQLADLIEEQWITG 81 F R CNL C + D+ +V +G +VD+ + LI+E G Sbjct: 183 FMRLHLTQRCNLTC--------VHC-YADSSPYVTSEGE----ISVDRWSRLIDEFADAG 229 Query: 82 EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI--CVS 134 + + TGGE L+ LI+ ++R ++ + +NG + + +D I CV Sbjct: 230 GER---VLFTGGEALIYKGCDLLIRKAHERALDVTLFSNG-LLIDRYLDLIRACVD 281 >gi|222874685|gb|EEF11816.1| predicted protein [Populus trichocarpa] Length = 226 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 25/142 (17%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D ++ + G + +++ G ++ R LTGGE Sbjct: 48 DRCNFRCSYCMPKEVFDKNYSYL--PHGSLLSFEEITRTARLFVQHGVQKIR---LTGGE 102 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ +V L++ L+ + ++ + TNG++ G++ + VS D Sbjct: 103 PLLRKNVETLVEQLSALRTPGGQPLDLTLTTNGSLLARKARALKDAGLNRVTVSLDGLDD 162 Query: 141 LKIKGGQELKLVFPQVNVSPEN 162 + ++ V E Sbjct: 163 AVFRSMNDVDFPVSDVLAGIEA 184 >gi|160900317|ref|YP_001565899.1| molybdenum cofactor biosynthesis protein A [Delftia acidovorans SPH-1] gi|160365901|gb|ABX37514.1| molybdenum cofactor biosynthesis protein A [Delftia acidovorans SPH-1] Length = 378 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 25/142 (17%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D ++ + G + +++ G ++ R LTGGE Sbjct: 48 DRCNFRCSYCMPKEVFDKNYSYL--PHGSLLSFEEITRTARLFVQHGVQKIR---LTGGE 102 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ +V L++ L+ + ++ + TNG++ G++ + VS D Sbjct: 103 PLLRKNVETLVEQLSALRTPGGQPLDLTLTTNGSLLARKARALKDAGLNRVTVSLDGLDD 162 Query: 141 LKIKGGQELKLVFPQVNVSPEN 162 + ++ V E Sbjct: 163 AVFRSMNDVDFPVSDVLAGIEA 184 >gi|29828190|ref|NP_822824.1| hypothetical protein SAV_1648 [Streptomyces avermitilis MA-4680] gi|29605292|dbj|BAC69359.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 340 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 38 CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + +++ L R + + TN + + +D SP + I G +E Sbjct: 80 GGEPLMHPQIDEIVRQLVARKKYVFLCTNAMLLRKKMVD-FTPSPYFAFAVHIDGLRE 136 >gi|15790963|ref|NP_280787.1| tRNA-modifying enzyme [Halobacterium sp. NRC-1] gi|169236710|ref|YP_001689910.1| tRNA-modifying enzyme [Halobacterium salinarum R1] gi|10581542|gb|AAG20267.1| conserved hypothetical protein [Halobacterium sp. NRC-1] gi|167727776|emb|CAP14564.1| conserved hypothetical protein [Halobacterium salinarum R1] Length = 325 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 46/136 (33%), Gaps = 33/136 (24%) Query: 15 GEG---GHAGRVAVF--CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG--RYNV 67 GEG HA F R C R + +C FC D G G + Sbjct: 35 GEGTCYKHA-----FYGIRSHRC--IQMTPVVRCNERCVFCWRDHSGHTYELDGVAWDDP 87 Query: 68 DQLADL-----------------IEEQWITGEKEGRYCVLT-GGEPLLQVDVP-LIQALN 108 + + D + + E R+ ++ GEP L +P LI+A + Sbjct: 88 EAVVDASIRLQRKLLSGFGGNDEVPRERFEEAMEPRHVAISLDGEPTLYPHLPELIEAFH 147 Query: 109 KRGFEIAVETNGTIEP 124 RG + +NGT Sbjct: 148 DRGLTTFLVSNGTRPA 163 >gi|269121870|ref|YP_003310047.1| radical SAM protein [Sebaldella termitidis ATCC 33386] gi|268615748|gb|ACZ10116.1| Radical SAM domain protein [Sebaldella termitidis ATCC 33386] Length = 447 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 21/107 (19%) Query: 30 SGCNLWSGREQ--------------DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE 75 +GC G + DR + C C F +++++++ + Sbjct: 75 AGCPFDCGICESHRQATCCVLLEVTDRCNLNCPVC---FAKAGSEVSSDPSLEKISEWYD 131 Query: 76 EQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGF-EIAVETNG 120 +G L+GGEP + +I+ +GF + TNG Sbjct: 132 MLLKSGG--PFNIQLSGGEPTMRHDLDEIIKLGKSKGFDFFQLNTNG 176 >gi|328943331|ref|ZP_08240796.1| pyruvate formate-lyase-activating enzyme [Atopobium vaginae DSM 15829] gi|327491300|gb|EGF23074.1| pyruvate formate-lyase-activating enzyme [Atopobium vaginae DSM 15829] Length = 294 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 21/113 (18%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VFC GC +C++C T G R +V +L + + + Sbjct: 38 VFC--QGCPF-----------RCKYCHNPETWAFDT-GQRMSVAELMKVYDRNRPFYRRG 83 Query: 85 GRYCVLTGGEPLLQVDV--PLIQALNK--RG-FEIAVETNGTIEPPQGIDWIC 132 G +GGEPL Q + L +A ++ +G ++++G P+ +++ Sbjct: 84 G--ITASGGEPLAQPNFIAALFKAAHEDPKGRIHTCLDSSGATFNPRHPEYVS 134 >gi|149922396|ref|ZP_01910830.1| heme biosynthesis protein [Plesiocystis pacifica SIR-1] gi|149816758|gb|EDM76248.1| heme biosynthesis protein [Plesiocystis pacifica SIR-1] Length = 548 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 7/89 (7%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104 +C FC V Q T+ + L D++ + K + GGEP + P + Sbjct: 18 RCVFC----VSGQMTEMRKAKPTPLPDVLAKFDEARAKGITKVTIMGGEPTIHPTFFPTV 73 Query: 105 QALNKRGFE-IAVETNGT-IEPPQGIDWI 131 + + GFE I + TNGT ++ ID I Sbjct: 74 KYALELGFETIVIFTNGTRLDKQDFIDRI 102 >gi|189423997|ref|YP_001951174.1| radical SAM protein [Geobacter lovleyi SZ] gi|189420256|gb|ACD94654.1| Radical SAM domain protein [Geobacter lovleyi SZ] Length = 436 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 19/111 (17%) Query: 29 FSGCN--------------LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI 74 GC L ++ + +C C IQ ++D LA I Sbjct: 83 LGGCPDDCGLCSAHQRRPTLVEIELTEKCNLRCPVCFMSAEEIQAKAAPGPDLDALAA-I 141 Query: 75 EEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVE--TNGTI 122 + LTGGEP ++ D+P I L +R GF A+E TNG + Sbjct: 142 YRSILAQTGPDTAIQLTGGEPTMRADLPEIVKLGRRIGFS-AIEVNTNGVV 191 >gi|323475095|gb|ADX85701.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus REY15A] gi|323477827|gb|ADX83065.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus HVE10/4] Length = 308 Score = 42.7 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 15/98 (15%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104 +C FC ++G +G Y + D++ + LTGGEP L+ D+ ++ Sbjct: 23 ECFFC-----HMEGEEGDNY-ILSKEDILLVAKVAKNFGINSVKLTGGEPTLRRDLVEIV 76 Query: 105 QALNKRGFE-IAVETNGTIEPP-------QGIDWICVS 134 + L + G+ +++ TNG + G+D I VS Sbjct: 77 RGLKQLGYRDVSMTTNGFLLKDLAYKLKLAGLDRINVS 114 >gi|293396112|ref|ZP_06640392.1| coenzyme PQQ synthesis protein E [Serratia odorifera DSM 4582] gi|291421245|gb|EFE94494.1| coenzyme PQQ synthesis protein E [Serratia odorifera DSM 4582] Length = 379 Score = 42.7 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF + +Q ++ + G + + Sbjct: 13 PLWLLAELTYRCPLQCPYCSNPLDFAAQEKE----LTTEQWINVFRQARAMGSVQLGF-- 66 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL++ D+P LI A GF + T+G Sbjct: 67 -SGGEPLVRKDLPELIAAARDLGFYTNLITSG 97 >gi|269216301|ref|ZP_06160155.1| molybdenum cofactor biosynthesis protein A [Slackia exigua ATCC 700122] gi|269130560|gb|EEZ61638.1| molybdenum cofactor biosynthesis protein A [Slackia exigua ATCC 700122] Length = 333 Score = 42.7 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 6/92 (6%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + ++++ ++ + + LTGGEPL++ Sbjct: 18 DRCNFRCIYCMPEEGVCSLGHDAILRLEEIERIVS---VAAGMGISHVRLTGGEPLVRKG 74 Query: 101 -VPLIQALNK-RGFE-IAVETNGTIEPPQGID 129 V LI A+ K G E IA+ TNG + P D Sbjct: 75 VVDLIAAMKKTEGIESIALTTNGALLPLMADD 106 >gi|297526031|ref|YP_003668055.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710] gi|297254947|gb|ADI31156.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710] Length = 564 Score = 42.7 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 6/89 (6%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L + +R + C +C + G ++Q+ ++ + G LTGG Sbjct: 114 LVNIVLTNRCNLSCWYC-FFYAEAAGYVYEP-TIEQIVSMVRQIKKQG--IAVNVQLTGG 169 Query: 94 EPLL-QVDVPLIQALNKRGFE-IAVETNG 120 EP L + V +++AL G + + TNG Sbjct: 170 EPTLREDLVDIVKALKAEGVRHLQLNTNG 198 >gi|255011415|ref|ZP_05283541.1| putative radical SAM-family protein [Bacteroides fragilis 3_1_12] Length = 361 Score = 42.7 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 14/99 (14%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C+ C +D + ++ + +I+ ++T Sbjct: 43 CNL-----------ACKHCGSD--CRKMSEQKDMPAEDFLRVIDSITPHVNPNEVNIIIT 89 Query: 92 GGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQGID 129 GGEPL++ D+ + AL +RG+ + +NG + +D Sbjct: 90 GGEPLMRNDLEKVGLALYRRGYPWGIVSNGLYLTRERLD 128 >gi|237728065|ref|ZP_04558546.1| pyruvate formate lyase II activase [Citrobacter sp. 30_2] gi|226910322|gb|EEH96240.1| pyruvate formate lyase II activase [Citrobacter sp. 30_2] Length = 292 Score = 42.7 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 50/144 (34%), Gaps = 32/144 (22%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-----------LWSGREQDRLSAQCRFC-- 50 IF +L G+G VF F GC L E R ++C C Sbjct: 24 IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESLSPRIETVRRESKCLHCTP 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G +D L + + I G L+GGE L+Q Sbjct: 79 CLRDADECPSGAFERIGRDITLDDLEREVMKDDIFFRSSGGGVTLSGGEVLMQAPFATRF 138 Query: 104 IQALNKRGFEIAVETNGTIEPPQG 127 +Q L + A+ET G + P G Sbjct: 139 LQRLRRWDVRCAIETAG--DAPAG 160 >gi|145590635|ref|YP_001152637.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM 13514] gi|145282403|gb|ABP49985.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 380 Score = 42.7 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 9/91 (9%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 LW + C++C F R ++A I GG Sbjct: 26 LWFVLTTGACNLACKYCGGSFSNKHSPWRPRAAPGEVAKFIAS-----RDSSPVVFFYGG 80 Query: 94 EPLL--QVDVPLIQALNKRGFEIAVETNGTI 122 EPLL Q ++ AL F I TNGT+ Sbjct: 81 EPLLNPQYIAKVMDALGNARFGIQ--TNGTL 109 >gi|328951759|ref|YP_004369093.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109] gi|328452083|gb|AEB07912.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109] Length = 392 Score = 42.7 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 6/91 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + R + +C C Q T G + LA+ + + +G Sbjct: 40 PVVVWNVTRRCNLKCVHC-----YAQATAGVAEDELSLAEGLALLDDLKAFGVPVVLFSG 94 Query: 93 GEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPL+ D+ L++ G + TNG + Sbjct: 95 GEPLMHPDLLTLVEHAVAAGMRAVISTNGVL 125 >gi|227828005|ref|YP_002829785.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus M.14.25] gi|229585274|ref|YP_002843776.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus M.16.27] gi|238620233|ref|YP_002915059.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus M.16.4] gi|259495867|sp|C3MZ99|MOAA_SULIA RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|259495868|sp|C4KIH7|MOAA_SULIK RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|259495870|sp|C3MXF3|MOAA_SULIM RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|227459801|gb|ACP38487.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus M.14.25] gi|228020324|gb|ACP55731.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus M.16.27] gi|238381303|gb|ACR42391.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus M.16.4] Length = 308 Score = 42.7 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 15/98 (15%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104 +C FC ++G +G Y + D++ + LTGGEP L+ D+ ++ Sbjct: 23 ECFFC-----HMEGEEGDNY-ILSKEDILLVAKVAKNFGINSVKLTGGEPTLRRDLVEIV 76 Query: 105 QALNKRGFE-IAVETNGTIEPP-------QGIDWICVS 134 + L + G+ +++ TNG + G+D I VS Sbjct: 77 RGLKQLGYRDVSMTTNGFLLKDLAYKLKLAGLDRINVS 114 >gi|229824233|ref|ZP_04450302.1| hypothetical protein GCWU000282_01537 [Catonella morbi ATCC 51271] gi|229786587|gb|EEP22701.1| hypothetical protein GCWU000282_01537 [Catonella morbi ATCC 51271] Length = 279 Score = 42.7 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 36/124 (29%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC L +C FC DT Sbjct: 38 TESFGSVDGPG---------IRFITFMQGCRL-----------RCEFCHNPDT----WAT 73 Query: 60 TKGGRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAV 116 G Y QL + ++ Q G+K G ++GGEPLLQ+D + + G + Sbjct: 74 RGGHDYTPQQLFDEAVQYQDFWGKKGG--VTVSGGEPLLQIDFIIEYFKICKANGIHTTL 131 Query: 117 ETNG 120 ++ G Sbjct: 132 DSCG 135 >gi|269798345|ref|YP_003312245.1| molybdenum cofactor biosynthesis protein A [Veillonella parvula DSM 2008] gi|269094974|gb|ACZ24965.1| molybdenum cofactor biosynthesis protein A [Veillonella parvula DSM 2008] Length = 321 Score = 42.7 bits (100), Expect = 0.032, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 21/107 (19%) Query: 27 CRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 R S CN C +C + T + + + + ++ Sbjct: 12 VRLSLTDACNFC-----------CPYC----RPAEITPQSQTQLLSVDEWMKILGAFHHI 56 Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGFE--IAVETNGTIEPPQG 127 + LTGGEPLL + L+ + + G+ I++ TNG++ + Sbjct: 57 GVKAVRLTGGEPLLYPHIEELLSRIKESGWFEDISMTTNGSLLASRA 103 >gi|218888075|ref|YP_002437396.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218759029|gb|ACL09928.1| Radical SAM domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 397 Score = 42.7 bits (100), Expect = 0.032, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 18/105 (17%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQV 99 R A C +C + T GG + + ++ + + + + R+ L G GEPLL Sbjct: 25 TRCDAACVYC------PRTTCGGGWRDEDMSMALFRRVLAACRGARHLHLQGWGEPLLHP 78 Query: 100 DVP--LIQALNKRGFEIAVETNGTI--------EPPQGIDWICVS 134 P L +A+ + G+ + + TNG G+D + +S Sbjct: 79 RYPDMLAEAV-EAGYVVGLTTNGVHLDAGMAGVVVDAGVDLVALS 122 >gi|297616758|ref|YP_003701917.1| molybdenum cofactor biosynthesis protein A [Syntrophothermus lipocalidus DSM 12680] gi|297144595|gb|ADI01352.1| molybdenum cofactor biosynthesis protein A [Syntrophothermus lipocalidus DSM 12680] Length = 326 Score = 42.7 bits (100), Expect = 0.032, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 8/96 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 N DR + +CR+C G++ +++++ +I+ + R LT Sbjct: 10 NYLRVSVTDRCNLRCRYC-MPEAGVELKPHSEILSLEEIHRIIK---VGTRVGIRKVRLT 65 Query: 92 GGEPLLQVDVP-LIQALNKRGF--EIAVETNGTIEP 124 GGEPL++ ++ L+Q + ++A+ TNG + P Sbjct: 66 GGEPLVRRNLSRLVQMIRTIDLIDDVAITTNGLLFP 101 >gi|262279087|ref|ZP_06056872.1| coenzyme PQQ synthesis protein E [Acinetobacter calcoaceticus RUH2202] gi|262259438|gb|EEY78171.1| coenzyme PQQ synthesis protein E [Acinetobacter calcoaceticus RUH2202] Length = 384 Score = 42.7 bits (100), Expect = 0.032, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 59/174 (33%), Gaps = 20/174 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C D+ + + D+ ++ G + + Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFDVFDQARQMGAVQLGF-- 61 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140 +GGEPL+ Q L+ +++GF + T+G G+D I VS +A Sbjct: 62 -SGGEPLVRQDLEQLVAHAHQQGFYTNLITSGMGLTEQRIADLKQAGLDHIQVSFQASDP 120 Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 + K F Q +D+ L + + I C + Sbjct: 121 VVNDALAGSKYAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIEQIIELCLE 173 >gi|291615125|ref|YP_003525282.1| molybdenum cofactor biosynthesis protein A [Sideroxydans lithotrophicus ES-1] gi|291585237|gb|ADE12895.1| molybdenum cofactor biosynthesis protein A [Sideroxydans lithotrophicus ES-1] Length = 369 Score = 42.7 bits (100), Expect = 0.032, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 18/105 (17%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D + + +++ ++ + G K+ R LTGGE Sbjct: 50 DRCNLRCTYCMPREIFDESHTFL--PRAELLTFEEIERVVRQFIKLGVKKIR---LTGGE 104 Query: 95 PLLQVDVP-LIQALN------KRGFEIAVETNGTIEPPQGIDWIC 132 PLL+ + LI+ L EIA+ TN + + D Sbjct: 105 PLLRRGIERLIEKLAGLQTLTGEPLEIALTTNAVLLARKAKDLKT 149 >gi|206890412|ref|YP_002249883.1| molybdenum cofactor biosynthesis protein A [Thermodesulfovibrio yellowstonii DSM 11347] gi|226707391|sp|B5YJ09|MOAA_THEYD RecName: Full=Molybdenum cofactor biosynthesis protein A gi|206742350|gb|ACI21407.1| molybdenum cofactor biosynthesis protein A [Thermodesulfovibrio yellowstonii DSM 11347] Length = 322 Score = 42.7 bits (100), Expect = 0.032, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 10/142 (7%) Query: 41 DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C + + + +++ ++E G + R +TGGEPLL+ Sbjct: 18 DRCNLRCIYCMPEEGITNLLPHHEILSYEEILKIVEIGVDLGITKIR---ITGGEPLLRK 74 Query: 100 DV-PLIQALNK-RGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL-VFPQ 155 + I+ L + G I + TNG + D K ++ + E K + Sbjct: 75 GIVSFIERLARIEGIRDIGMTTNGVLLKKFAKDLYNAGLKR-VNVSLDSLDENKFRAITR 133 Query: 156 VNVSPENYIGFDFERFS-LQPM 176 V + + + G D + + LQP+ Sbjct: 134 VGLIDDVFEGIDEAKNAGLQPV 155 >gi|312137493|ref|YP_004004830.1| radical sam domain protein [Methanothermus fervidus DSM 2088] gi|311225212|gb|ADP78068.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088] Length = 231 Score = 42.7 bits (100), Expect = 0.032, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 6/84 (7%) Query: 39 EQDRLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 + L A+C F C + + + +V++L + ++ + + ++ GGEP L Sbjct: 11 KITILVARCNFKC--KYCFFKPFREIDIDVEKLIKITKKLR--KQFKLNKIMIAGGEPTL 66 Query: 98 QVDVP-LIQALNKRGFEIAVETNG 120 + D+P ++ L + F + + TNG Sbjct: 67 EKDLPEFVKLLKENNFYVIISTNG 90 >gi|289207329|ref|YP_003459395.1| molybdenum cofactor biosynthesis protein A [Thioalkalivibrio sp. K90mix] gi|288942960|gb|ADC70659.1| molybdenum cofactor biosynthesis protein A [Thioalkalivibrio sp. K90mix] Length = 334 Score = 42.7 bits (100), Expect = 0.032, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 65/196 (33%), Gaps = 56/196 (28%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEG 85 R S DR +C +C + + + +++ ++ G + Sbjct: 22 VRLS--------VTDRCDLRCFYC-MPKGFRDFEEPEHWLSFEEIERVMGAFGRLGTRRV 72 Query: 86 RYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144 R LTGGEPL++ ++P L LN GID I +S + Sbjct: 73 R---LTGGEPLVRKNLPDLAARLNAL---------------PGIDDISLS--TNATRMAR 112 Query: 145 GGQELKLV-FPQVNVSPENYIGFDFERFS------------------LQPMD------GP 179 QELK ++NVS ++ F+ + L P+ G Sbjct: 113 HAQELKDAGVARINVSLDSLKPEVFKEITGGKLEKVLDGLMASKAAGLDPIKINMVVMGG 172 Query: 180 FLEENTNLAISYCFQN 195 E + +C ++ Sbjct: 173 INEPEVEDMVDFCIEH 188 >gi|331087326|ref|ZP_08336395.1| hypothetical protein HMPREF0987_02698 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408417|gb|EGG87888.1| hypothetical protein HMPREF0987_02698 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 435 Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 31/149 (20%) Query: 31 GCNLWSGREQDRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 GCNL +CR C D + V R+ +++ +++E G E Sbjct: 122 GCNL-----------KCRHCYLGTDINHVQT------RFTLEKAKTILDELKAAGVVE-- 162 Query: 87 YCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 TGGE + +I+ F + + TNGT+ + D + P + + + G Sbjct: 163 -VTFTGGEIFSYPHALEVIEYACDLKFLVTILTNGTLITEKIADKLTQLPISEIRISMYG 221 Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQ 174 +E F + + FD +LQ Sbjct: 222 TKEFHDRFVGIEGA------FDKSLHALQ 244 >gi|308234338|ref|ZP_07665075.1| pyruvate formate-lyase activating enzyme [Atopobium vaginae DSM 15829] Length = 269 Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 21/113 (18%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VFC GC +C++C T G R +V +L + + + Sbjct: 13 VFC--QGCPF-----------RCKYCHNPETWAFDT-GQRMSVAELMKVYDRNRPFYRRG 58 Query: 85 GRYCVLTGGEPLLQVDV--PLIQALNK--RG-FEIAVETNGTIEPPQGIDWIC 132 G +GGEPL Q + L +A ++ +G ++++G P+ +++ Sbjct: 59 G--ITASGGEPLAQPNFIAALFKAAHEDPKGRIHTCLDSSGATFNPRHPEYVS 109 >gi|307302848|ref|ZP_07582603.1| Radical SAM domain protein [Shewanella baltica BA175] gi|306913208|gb|EFN43630.1| Radical SAM domain protein [Shewanella baltica BA175] Length = 298 Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 17/105 (16%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCV 89 NL + S +C CDT + Y V+++ ++ Q Sbjct: 72 NLNNKPRIRWDSERCSQCDTCLAVCPKQASPKVTHYTVEEILGILHSQR----HFINGIT 127 Query: 90 LTGGEPLLQVDVPLIQALNK--------RGFEIAVETNGTIEPPQ 126 ++GGE LQ +P I AL K ++TNG++ Sbjct: 128 VSGGEASLQ--LPFILALFKGIKATESLSHLTCMLDTNGSLSLTG 170 >gi|262194083|ref|YP_003265292.1| glycosyl transferase group 1 [Haliangium ochraceum DSM 14365] gi|262077430|gb|ACY13399.1| glycosyl transferase group 1 [Haliangium ochraceum DSM 14365] Length = 782 Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 9/98 (9%) Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN-KRGFEIAV 116 +G ++ + +++ + G +E T GEPLL I AL + G + + Sbjct: 479 EGRARREMPIELIREVVADAAAHGLRE--IIPSTMGEPLLYEHFEAILALCVEHGVRLNL 536 Query: 117 ETNGTIEPPQGIDW------ICVSPKAGCDLKIKGGQE 148 TNG+ W + K + K QE Sbjct: 537 TTNGSFPRLGARAWAERIVPVTSDVKISWNGATKATQE 574 >gi|42782634|ref|NP_979881.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC 10987] gi|42738560|gb|AAS42489.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC 10987] Length = 338 Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D F+ + D++ + G ++ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ LNK G E I + TNG++ D + VS Sbjct: 75 GEPLLRRGLPQLIERLNKINGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126 >gi|302335982|ref|YP_003801189.1| glycyl-radical enzyme activating protein family [Olsenella uli DSM 7084] gi|301319822|gb|ADK68309.1| glycyl-radical enzyme activating protein family [Olsenella uli DSM 7084] Length = 302 Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118 G VD++ + + + E G L+GGE L D+ L+ L+ G + +ET Sbjct: 107 GETKTVDEVLETCLQDRLFYEDSGGGVTLSGGEALTWPEFDIELLSRLHGEGVDTCIET 165 >gi|28867738|ref|NP_790357.1| coenzyme PQQ synthesis protein E [Pseudomonas syringae pv. tomato str. DC3000] gi|32363288|sp|Q88A84|PQQE_PSESM RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|28850973|gb|AAO54052.1| coenzyme PQQ synthesis protein E [Pseudomonas syringae pv. tomato str. DC3000] gi|331015064|gb|EGH95120.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 389 Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF +G +Q +++E G + Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAR----QGQELTTEQWFKVMQEAREMGAAQ---IG 74 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 +GGEPL+ Q LI + GF + T+G Sbjct: 75 FSGGEPLVRQDLAELIAEARRLGFYTNLITSG 106 >gi|312863599|ref|ZP_07723837.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus vestibularis F0396] gi|322516171|ref|ZP_08069104.1| pyruvate formate-lyase activating enzyme [Streptococcus vestibularis ATCC 49124] gi|311101135|gb|EFQ59340.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus vestibularis F0396] gi|322125347|gb|EFX96702.1| pyruvate formate-lyase activating enzyme [Streptococcus vestibularis ATCC 49124] Length = 266 Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 42/181 (23%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +C++C DT Sbjct: 16 TESFGSVDGPG---------IRFIVFMQGC-----------KMRCQYCHNPDT-----WA 50 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIA 115 + + + D+++E G + ++GGE +LQ+D L K G Sbjct: 51 MESNKAVERTVEDVLDEALRFRHFWGEHGGITVSGGEAMLQIDFVTALFTEAKKLGIHCT 110 Query: 116 VETNG-----TIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169 ++T G T E + +D + V+ D+K ++ K V Q N + + + + Sbjct: 111 LDTCGFVYRNTPEYHEVVDKLLAVTDLVLLDIKEIDPEQHKFVTRQPNKNILEFAQYLSD 170 Query: 170 R 170 + Sbjct: 171 K 171 >gi|300728461|ref|ZP_07061821.1| pyruvate formate-lyase 1-activating enzyme [Prevotella bryantii B14] gi|299774262|gb|EFI70894.1| pyruvate formate-lyase 1-activating enzyme [Prevotella bryantii B14] Length = 248 Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 34/121 (28%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F ++ G G RF GC + +C+FC DT + Sbjct: 10 ESFGSVDGPG---------IRFIAFLKGCPM-----------RCQFCHNPDT----WKLD 45 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 K D L D E++ T E ++GGE L+Q+D + L + ++RG ++T Sbjct: 46 KTNETTADDLLDK-AERYRTYWGEKGGITVSGGEALMQIDFLLELFEKAHQRGINTCLDT 104 Query: 119 N 119 + Sbjct: 105 S 105 >gi|104782043|ref|YP_608541.1| hypothetical protein PSEEN2976 [Pseudomonas entomophila L48] gi|95111030|emb|CAK15750.1| conserved hypothetical protein [Pseudomonas entomophila L48] Length = 476 Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 49/135 (36%), Gaps = 41/135 (30%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GCNL C +C D D + + G + N +E E R Sbjct: 110 TGCNL-----------SCTYCYKEDLD----KPSAGRKMNSATAEASVEMLLRESPDEAR 154 Query: 87 Y-CVLTGGEPLLQVDVPLIQ--------ALNKRGFEIA--VETNGTIEPPQGIDW----- 130 Y V GGEPL + LI+ + G ++ + TN T+ + +DW Sbjct: 155 YSVVFFGGEPL--SNRALIEHMVAYCERRFAEAGKQVEFIMTTNATLLTEEIVDWLDAHR 212 Query: 131 --ICVS---PKAGCD 140 + VS PK D Sbjct: 213 FGLSVSIDGPKTVHD 227 >gi|319793190|ref|YP_004154830.1| molybdenum cofactor biosynthesis protein a [Variovorax paradoxus EPS] gi|315595653|gb|ADU36719.1| molybdenum cofactor biosynthesis protein A [Variovorax paradoxus EPS] Length = 386 Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 18/94 (19%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + + ++ + R LTGGE Sbjct: 53 DRCNFRCSYCMPKDVFDKDYKYLPHS-----ALLSFEEMTRLARLFAAHGVRKIRLTGGE 107 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGT 121 PLL+ ++ LI+ L + E+ + TNG+ Sbjct: 108 PLLRKNIEALIEQLAEIRTPDGAPLELTLTTNGS 141 >gi|307594461|ref|YP_003900778.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307549662|gb|ADN49727.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429] Length = 413 Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 11/100 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L R + +C C ++ IQG ++ ++++ E +++ Sbjct: 36 PLIFWNITYRCNLKCIHC---YINAIQGLSRDELTTEEALRVVDD---AHELRTPLLIIS 89 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDW 130 GGEPL++ D+ +++ N+ G +I++ TNGT+ DW Sbjct: 90 GGEPLIREDITEVMRRANEYGIKISLSTNGTL---ITRDW 126 >gi|302130686|ref|ZP_07256676.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 389 Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF +G +Q +++E G + Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAR----QGQELTTEQWFKVMQEAREMGAAQ---IG 74 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 +GGEPL+ Q LI + GF + T+G Sbjct: 75 FSGGEPLVRQDLAELIAEARRLGFYTNLITSG 106 >gi|213967724|ref|ZP_03395871.1| coenzyme PQQ synthesis protein E [Pseudomonas syringae pv. tomato T1] gi|301382361|ref|ZP_07230779.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. tomato Max13] gi|302062929|ref|ZP_07254470.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. tomato K40] gi|213927500|gb|EEB61048.1| coenzyme PQQ synthesis protein E [Pseudomonas syringae pv. tomato T1] Length = 389 Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF +G +Q +++E G + Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAR----QGQELTTEQWFKVMQEAREMGAAQ---IG 74 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 +GGEPL+ Q LI + GF + T+G Sbjct: 75 FSGGEPLVRQDLAELIAEARRLGFYTNLITSG 106 >gi|189348185|ref|YP_001941381.1| pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia multivorans ATCC 17616] gi|189338323|dbj|BAG47391.1| pyrroloquinoline quinone biosynthesis protein E [Burkholderia multivorans ATCC 17616] Length = 377 Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 9/90 (10%) Query: 34 LWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R C FC + + T G + D +I + G + + + Sbjct: 14 LWLLAELTYRCPLHCAFC---YNPVDFATHGAELDTDTWRTVIADARALGAAQLGF---S 67 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 GGEPL + D+ L++ GF + T+G Sbjct: 68 GGEPLQRDDLETLVEHARSLGFYTNLITSG 97 >gi|115360909|ref|YP_778046.1| pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia ambifaria AMMD] gi|115286237|gb|ABI91712.1| coenzyme PQQ biosynthesis protein E [Burkholderia ambifaria AMMD] Length = 374 Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 9/90 (10%) Query: 34 LWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R C FC + + T G + D +I + G + + Sbjct: 14 LWLLAELTYRCPLHCAFC---YNPVDFATHGAELDTDAWRTVISDARALGAAQ---IGFS 67 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 GGEPL + D+ L+Q GF + T+G Sbjct: 68 GGEPLQRDDLEVLVQHARSLGFYTNLITSG 97 >gi|238792408|ref|ZP_04636042.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia intermedia ATCC 29909] gi|238728334|gb|EEQ19854.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia intermedia ATCC 29909] Length = 246 Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 44/184 (23%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G V++L Sbjct: 25 VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELVKEAITYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134 G +GGE +LQ + +A ++ G ++TNG + + +D Sbjct: 68 NASGGGVTASGGEAILQAEFVRDWFRACHEVGIHTCLDTNGFVRRYDPVIDELLD----- 122 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 DL + +++ Q V N+ +F R+ + N I Y Sbjct: 123 ---ATDLVMLDLKQMDDSVHQNLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV 171 Query: 195 NPKW 198 P W Sbjct: 172 -PGW 174 >gi|330968164|gb|EGH68424.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. actinidiae str. M302091] Length = 389 Score = 42.7 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF +G +Q +++E G + Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAR----QGQELTTEQWFKVMQEAREMGAAQ---IG 74 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 +GGEPL+ Q LI + GF + T+G Sbjct: 75 FSGGEPLVRQDLAELIAEARRLGFYTNLITSG 106 >gi|41615170|ref|NP_963668.1| hypothetical protein NEQ381 [Nanoarchaeum equitans Kin4-M] gi|40068894|gb|AAR39229.1| NEQ381 [Nanoarchaeum equitans Kin4-M] Length = 245 Score = 42.7 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 21/101 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCNL + A+ C G ++++L D ++ + + Sbjct: 26 LCGCNLKCPFCHNWKIAEKIGC------------GELDINRLLDELDSASLLIDYLH--- 70 Query: 89 VLTGGEPLLQVDVPLIQALNK--RGFEI--AVETNGTIEPP 125 +TGGEPLLQ + PL++ + + ++ TN T+ P Sbjct: 71 -VTGGEPLLQWE-PLLELFKTSYENYNVENSLNTNFTLTIP 109 >gi|21674155|ref|NP_662220.1| molybdenum cofactor biosynthesis protein A [Chlorobium tepidum TLS] gi|24211970|sp|P59038|MOAA_CHLTE RecName: Full=Molybdenum cofactor biosynthesis protein A gi|21647315|gb|AAM72562.1| molybdenum cofactor biosynthesis protein A [Chlorobium tepidum TLS] Length = 330 Score = 42.7 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 27/113 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C T+ + +V + + LI G ++ R+ T Sbjct: 30 CNL-----------RCTYC---LKEDAPTQTQQLDVVETSKLIALLAGMGVRKIRF---T 72 Query: 92 GGEPLLQVDVPLIQALNKR--GF-EIAVETNGTI-------EPPQGIDWICVS 134 GGEPLL +P + + K G + + TNG + G+D + +S Sbjct: 73 GGEPLLHPSIPELVRIAKATPGIDTVCITTNGVLLDRQLDALVEAGLDGVNLS 125 >gi|330874819|gb|EGH08968.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 389 Score = 42.7 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF +G +Q +++E G + Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAR----QGQELTTEQWFKVMQEAREMGAAQ---IG 74 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 +GGEPL+ Q LI + GF + T+G Sbjct: 75 FSGGEPLVRQDLAELIAEARRLGFYTNLITSG 106 >gi|289178850|gb|ADC86096.1| Pyruvate formate-lyase activating enzyme [Bifidobacterium animalis subsp. lactis BB-12] Length = 311 Score = 42.7 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 30/135 (22%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G +D + IE Sbjct: 88 RMTVF--LSGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMVVKIERYK 130 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTIEP---PQGIDWICV 133 E +GGE ++Q + +A + G ++T+G + + ID I + Sbjct: 131 DLFEATKGGITFSGGESMMQPAFVSRVFRAAKEMGVHTCLDTSGFLNANYSDEMIDDIDL 190 Query: 134 SPKAGCDLKIKGGQE 148 C L +K G E Sbjct: 191 -----CLLDVKSGDE 200 >gi|256751165|ref|ZP_05492046.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256749890|gb|EEU62913.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 460 Score = 42.7 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 19/92 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV-DQLADLIEEQWITGEKEGRYCVL 90 CNL +C+ C ++G K +Y +++ +L+ E +G E + Sbjct: 145 CNL-----------KCKHC---YLGNARFKLLQYTPLERIKELLTELKNSGVIE---VFI 187 Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 TGGEP L + +++ F + + TNGT Sbjct: 188 TGGEPFLHPNFFEILEYAVDMNFFVTILTNGT 219 >gi|183601394|ref|ZP_02962764.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium animalis subsp. lactis HN019] gi|219683451|ref|YP_002469834.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium animalis subsp. lactis AD011] gi|241191106|ref|YP_002968500.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196512|ref|YP_002970067.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219000|gb|EDT89641.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium animalis subsp. lactis HN019] gi|219621101|gb|ACL29258.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium animalis subsp. lactis AD011] gi|240249498|gb|ACS46438.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251066|gb|ACS48005.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794095|gb|ADG33630.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium animalis subsp. lactis V9] Length = 300 Score = 42.7 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 30/135 (22%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G +D + IE Sbjct: 77 RMTVF--LSGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMVVKIERYK 119 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTIEP---PQGIDWICV 133 E +GGE ++Q + +A + G ++T+G + + ID I + Sbjct: 120 DLFEATKGGITFSGGESMMQPAFVSRVFRAAKEMGVHTCLDTSGFLNANYSDEMIDDIDL 179 Query: 134 SPKAGCDLKIKGGQE 148 C L +K G E Sbjct: 180 -----CLLDVKSGDE 189 >gi|168179167|ref|ZP_02613831.1| glycyl-radical enzyme activating family protein [Clostridium botulinum NCTC 2916] gi|226950612|ref|YP_002805703.1| glycyl-radical enzyme activating family protein [Clostridium botulinum A2 str. Kyoto] gi|182670116|gb|EDT82092.1| glycyl-radical enzyme activating family protein [Clostridium botulinum NCTC 2916] gi|226844506|gb|ACO87172.1| glycyl-radical enzyme activating family protein [Clostridium botulinum A2 str. Kyoto] Length = 301 Score = 42.7 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 6/84 (7%) Query: 43 LSAQCRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 +C FC T+F + G ++ I + + E+ G +GGEP+L Sbjct: 80 DEGKCNFCGKCTNFCPNNAREYVGKDLTSQEIIKEIIKDEVFYEQSGGGVTFSGGEPMLH 139 Query: 99 VDVP--LIQALNKRGFEIAVETNG 120 D +++ RG ++T+G Sbjct: 140 ADFINGILEECKARGIHTTIDTSG 163 >gi|161522986|ref|YP_001585915.1| pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia multivorans ATCC 17616] gi|160346539|gb|ABX19623.1| coenzyme PQQ biosynthesis protein E [Burkholderia multivorans ATCC 17616] Length = 387 Score = 42.7 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 9/90 (10%) Query: 34 LWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R C FC + + T G + D +I + G + + + Sbjct: 24 LWLLAELTYRCPLHCAFC---YNPVDFATHGAELDTDTWRTVIADARALGAAQLGF---S 77 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 GGEPL + D+ L++ GF + T+G Sbjct: 78 GGEPLQRDDLETLVEHARSLGFYTNLITSG 107 >gi|94264953|ref|ZP_01288725.1| Radical SAM [delta proteobacterium MLMS-1] gi|93454609|gb|EAT04884.1| Radical SAM [delta proteobacterium MLMS-1] Length = 358 Score = 42.7 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 18/98 (18%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 + CNL CR C ++ ++ + ++ Sbjct: 31 LTACNL-----------SCRHC---YINPDQHGRATVTRAEIDHWLARL--AAPEQQSNV 74 Query: 89 VLTGGEPLLQVDVPL-IQALNKRGFE-IAVETNGTIEP 124 V GGEP L ++ ++ + G+ + ++TNGT P Sbjct: 75 VFLGGEPSLHPELLHGVRQARRLGYRGVTIDTNGTFAP 112 >gi|330503316|ref|YP_004380185.1| putative radical-activating enzyme [Pseudomonas mendocina NK-01] gi|328917602|gb|AEB58433.1| putative radical-activating enzyme [Pseudomonas mendocina NK-01] Length = 261 Score = 42.7 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 10/111 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 +L + +CR+C + G ++ ++ D ++++ + V +G Sbjct: 49 HLACVLFCQGCAWRCRYCHNPELIRCGATNAEWSWAKVLDFLQQRQGLLQA----VVFSG 104 Query: 93 GEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPP-----QGIDWICVSPKA 137 GE LQ+ +P ++ + + GF++ + + G DW+ KA Sbjct: 105 GEATLQLALPSAMRRVRELGFKVGLHSAGIKPASFGRALAHCDWVGFDVKA 155 >gi|168183500|ref|ZP_02618164.1| glycyl-radical enzyme activating family protein [Clostridium botulinum Bf] gi|182673358|gb|EDT85319.1| glycyl-radical enzyme activating family protein [Clostridium botulinum Bf] Length = 300 Score = 42.7 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 6/84 (7%) Query: 43 LSAQCRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 +C FC T+F + G ++ I + + E+ G +GGEP+L Sbjct: 80 DEGKCNFCGKCTNFCPNNAREYVGKDLTSQEIIKEIIKDEVFYEQSGGGVTFSGGEPMLH 139 Query: 99 VDVP--LIQALNKRGFEIAVETNG 120 D +++ RG ++T+G Sbjct: 140 ADFINGILEECKARGIHTTIDTSG 163 >gi|313149231|ref|ZP_07811424.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137998|gb|EFR55358.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 346 Score = 42.7 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 14/99 (14%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C+ C +D + ++ + +I+ ++T Sbjct: 28 CNL-----------ACKHCGSD--CRKMSEQKDMPAEDFLRVIDSITPHVNPNEVNIIIT 74 Query: 92 GGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQGID 129 GGEPL++ D+ + AL +RG+ + +NG + +D Sbjct: 75 GGEPLMRNDLEKVGLALYRRGYPWGIVSNGLYLTRERLD 113 >gi|295697133|ref|YP_003590371.1| Radical SAM domain protein [Bacillus tusciae DSM 2912] gi|295412735|gb|ADG07227.1| Radical SAM domain protein [Bacillus tusciae DSM 2912] Length = 396 Score = 42.7 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 19/97 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C+ C + G G ++ I++ + ++ Sbjct: 47 CNL-----------RCQHC---YANAGPGRFEGEMTHEEGRAFIDDL---AAFKVPVLLV 89 Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ 126 +GGEPL + D + L+Q +G + + TNGT+ P+ Sbjct: 90 SGGEPLSRPDTLDLMQYAVSKGIRVTLSTNGTLITPE 126 >gi|253681060|ref|ZP_04861863.1| 1-methyl alkyl succinate synthase activase [Clostridium botulinum D str. 1873] gi|253562909|gb|EES92355.1| 1-methyl alkyl succinate synthase activase [Clostridium botulinum D str. 1873] Length = 310 Score = 42.7 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 G NV+++ +++ I + L+GGEPL+Q + L++A G+ +ET Sbjct: 110 GKEMNVNEIIQELKKDSIQFRRSNGGITLSGGEPLMQSKFTLELLKACKSMGWNTTMET 168 >gi|254421513|ref|ZP_05035231.1| radical SAM domain protein [Synechococcus sp. PCC 7335] gi|196189002|gb|EDX83966.1| radical SAM domain protein [Synechococcus sp. PCC 7335] Length = 337 Score = 42.7 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 20/119 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + + ++ +EE + Sbjct: 38 CNL-----------ACSGCG-KIQHPKEILKQNLSPEECFAAVEECG------APVVSIP 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEPLL + +++ L +R + + TNG + + +D S + + G QEL Sbjct: 80 GGEPLLHPQIDEIVEGLIERKKFVYLCTNG-LLLEKSLDKFKPSSYLSFSVHLDGLQEL 137 >gi|125974193|ref|YP_001038103.1| radical SAM family protein [Clostridium thermocellum ATCC 27405] gi|125714418|gb|ABN52910.1| Radical SAM [Clostridium thermocellum ATCC 27405] Length = 326 Score = 42.7 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 20/121 (16%) Query: 32 CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 CNL +C C D+ K DQ+ +++E GE + Sbjct: 30 CNL-----------RCLHCFNDSPTSTKSACK--ELEDDQIIKIVKEL---GEMKVANVC 73 Query: 90 LTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147 +GGEPL+ QV + L +R ++ TNGT+ Q + + V + + G Sbjct: 74 FSGGEPLVRKQVLFNCLMLLGQRNVRTSIVTNGTLIDEQTAEMLNVLGVKEVQVSLDGCN 133 Query: 148 E 148 E Sbjct: 134 E 134 >gi|308374965|ref|ZP_07442243.2| transferase [Mycobacterium tuberculosis SUMu007] gi|308376208|ref|ZP_07438032.2| transferase [Mycobacterium tuberculosis SUMu008] gi|308347873|gb|EFP36724.1| transferase [Mycobacterium tuberculosis SUMu007] gi|308351861|gb|EFP40712.1| transferase [Mycobacterium tuberculosis SUMu008] Length = 727 Score = 42.7 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 18/112 (16%) Query: 27 CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQL 70 RF GC G D C C F G Sbjct: 16 LRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYAITAAQ 75 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRG-FEIAVETNG 120 + + + + E E + +GGEP + + + A R + + TNG Sbjct: 76 CERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVIINTNG 127 >gi|300813209|ref|ZP_07093577.1| six-Cys-in-45 modification radical SAM protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512662|gb|EFK39794.1| six-Cys-in-45 modification radical SAM protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 449 Score = 42.7 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 29/113 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRY-C 88 CNL +C++C F KG R ++ D ++ + Sbjct: 103 CNL-----------RCKYC---FASQGDFKGKRLLMDLQTGKDALDFLIKSSGYRRNLEV 148 Query: 89 VLTGGEPLLQVDVPLIQALNKRG----------FEIAVETNGTIEPPQGIDWI 131 GGEPL+ + +++ L + G F + TNGT ID+I Sbjct: 149 DFFGGEPLM--NFEVVKKLVEYGRIQEKKYNKHFRFTITTNGTYLTDDKIDFI 199 >gi|284007593|emb|CBA73174.1| pyruvate formate-lyase activating enzyme [Arsenophonus nasoniae] Length = 246 Score = 42.7 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G V++L + Sbjct: 25 VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEELMKEVVSYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A ++G ++TNG Sbjct: 68 NASGGGVTASGGEAILQAEFVRDWFRACQQQGIHTCLDTNG 108 >gi|154151787|ref|YP_001405405.1| radical SAM domain-containing protein [Candidatus Methanoregula boonei 6A8] gi|154000339|gb|ABS56762.1| Radical SAM domain protein [Methanoregula boonei 6A8] Length = 332 Score = 42.7 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 16/103 (15%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGRYC 88 GCNL C FC D T+ Y V D L +EE Sbjct: 37 GCNL-----------NCPFCSVDAGPCSKTRATSYEVELDYLLSAVEEIAPFKGTGVECH 85 Query: 89 VLTGGEPLLQVDVP-LIQALNKRGF--EIAVETNGTIEPPQGI 128 + + GEPL+ +P L+ AL ++++TNGT+ + I Sbjct: 86 IDSPGEPLMYARLPELVAALKAIDAVSTVSLQTNGTLLDERKI 128 >gi|15643993|ref|NP_229042.1| hypothetical protein TM1237 [Thermotoga maritima MSB8] gi|148270657|ref|YP_001245117.1| radical SAM domain-containing protein [Thermotoga petrophila RKU-1] gi|170289363|ref|YP_001739601.1| radical SAM domain-containing protein [Thermotoga sp. RQ2] gi|281412967|ref|YP_003347046.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10] gi|4981791|gb|AAD36312.1|AE001779_14 conserved hypothetical protein [Thermotoga maritima MSB8] gi|147736201|gb|ABQ47541.1| Radical SAM domain protein [Thermotoga petrophila RKU-1] gi|170176866|gb|ACB09918.1| Radical SAM domain protein [Thermotoga sp. RQ2] gi|281374070|gb|ADA67632.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10] Length = 355 Score = 42.7 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 47/133 (35%), Gaps = 40/133 (30%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQG--TKGGRYNVDQLADLIEEQW 78 AVF F+GCNL C FC D ++ G ++G ++D+L ++ + Sbjct: 127 AVF--FAGCNL-----------DCLFCQNIDHKYMVKDGRISEGKIVDIDELVEIAMKPR 173 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQALN-KRGFEIAVETNGTIEP------------- 124 ++ GG+P L A+ I ETNG P Sbjct: 174 VSC------VCFFGGDPTPWTVFALEFAVKLGNRRRICWETNGLAHPRIMERMARVSLES 227 Query: 125 --PQGIDWICVSP 135 IDW SP Sbjct: 228 GGIVKIDWKAFSP 240 >gi|253800776|ref|YP_003033777.1| transferase [Mycobacterium tuberculosis KZN 1435] gi|254233222|ref|ZP_04926548.1| hypothetical protein TBCG_03654 [Mycobacterium tuberculosis C] gi|308372639|ref|ZP_07429331.2| transferase [Mycobacterium tuberculosis SUMu004] gi|308379602|ref|ZP_07486866.2| transferase [Mycobacterium tuberculosis SUMu010] gi|308380789|ref|ZP_07491083.2| transferase [Mycobacterium tuberculosis SUMu011] gi|124603015|gb|EAY61290.1| hypothetical protein TBCG_03654 [Mycobacterium tuberculosis C] gi|253322279|gb|ACT26882.1| transferase [Mycobacterium tuberculosis KZN 1435] gi|308332594|gb|EFP21445.1| transferase [Mycobacterium tuberculosis SUMu004] gi|308356477|gb|EFP45328.1| transferase [Mycobacterium tuberculosis SUMu010] gi|308360423|gb|EFP49274.1| transferase [Mycobacterium tuberculosis SUMu011] gi|323717593|gb|EGB26795.1| transferase [Mycobacterium tuberculosis CDC1551A] Length = 788 Score = 42.7 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 18/112 (16%) Query: 27 CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQL 70 RF GC G D C C F G Sbjct: 77 LRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYAITAAQ 136 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRG-FEIAVETNG 120 + + + + E E + +GGEP + + + A R + + TNG Sbjct: 137 CERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVIINTNG 188 >gi|332173797|gb|AEE23051.1| molybdenum cofactor biosynthesis protein A [Glaciecola agarilytica 4H-3-7+YE-5] Length = 322 Score = 42.7 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 38/148 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN CDT +++++ + G + R +T Sbjct: 21 CNFSCEYCLPDGYQ----CDTPRDF--------LSLNEIKRIASAFAQLGTSKIR---IT 65 Query: 92 GGEPLLQVDVPLIQALNK----RGF-EIAVETNGTIEPPQGID-WI------------CV 133 GGEP L+ D+P QA+ G ++A+ TNG + P+ ID W+ + Sbjct: 66 GGEPSLRKDLP--QAIRACATTPGIKQVAITTNG-YKLPEHIDSWVDAGLTSMNISIDSL 122 Query: 134 SPKAGCDLKIKGGQELKLVFPQVNVSPE 161 P+ I G +L ++ ++ + E Sbjct: 123 DPRMFAS--ITGHDKLDVILRGIDRAIE 148 >gi|306795393|ref|ZP_07433695.1| transferase [Mycobacterium tuberculosis SUMu006] gi|308344074|gb|EFP32925.1| transferase [Mycobacterium tuberculosis SUMu006] Length = 776 Score = 42.7 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 18/112 (16%) Query: 27 CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQL 70 RF GC G D C C F G Sbjct: 65 LRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYAITAAQ 124 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRG-FEIAVETNG 120 + + + + E E + +GGEP + + + A R + + TNG Sbjct: 125 CERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVIINTNG 176 >gi|302349206|ref|YP_003816844.1| Radical SAM domain protein [Acidilobus saccharovorans 345-15] gi|302329618|gb|ADL19813.1| Radical SAM domain protein [Acidilobus saccharovorans 345-15] Length = 351 Score = 42.7 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 10/91 (10%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 LW + +C +C F RY++++L L+E + GG Sbjct: 2 LWLVFTTGFCNLRCDYCGGSFPSKVVPYTVRYDIEKLKRLVEA------DPQATVIFYGG 55 Query: 94 EPLLQVDV--PLIQALNKRGFEIAVETNGTI 122 EPL + + R + + TNGT+ Sbjct: 56 EPLANPRFVEEFMDRVRARRYGVQ--TNGTL 84 >gi|215432709|ref|ZP_03430628.1| putative transferase [Mycobacterium tuberculosis EAS054] gi|260184650|ref|ZP_05762124.1| putative transferase [Mycobacterium tuberculosis CPHL_A] gi|260198775|ref|ZP_05766266.1| putative transferase [Mycobacterium tuberculosis T46] gi|260202931|ref|ZP_05770422.1| putative transferase [Mycobacterium tuberculosis K85] gi|289441165|ref|ZP_06430909.1| transferase [Mycobacterium tuberculosis T46] gi|289445328|ref|ZP_06435072.1| transferase [Mycobacterium tuberculosis CPHL_A] gi|289572380|ref|ZP_06452607.1| transferase [Mycobacterium tuberculosis K85] gi|289755860|ref|ZP_06515238.1| transferase [Mycobacterium tuberculosis EAS054] gi|289414084|gb|EFD11324.1| transferase [Mycobacterium tuberculosis T46] gi|289418286|gb|EFD15487.1| transferase [Mycobacterium tuberculosis CPHL_A] gi|289536811|gb|EFD41389.1| transferase [Mycobacterium tuberculosis K85] gi|289696447|gb|EFD63876.1| transferase [Mycobacterium tuberculosis EAS054] Length = 776 Score = 42.7 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 18/112 (16%) Query: 27 CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQL 70 RF GC G D C C F G Sbjct: 65 LRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYAITAAQ 124 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRG-FEIAVETNG 120 + + + + E E + +GGEP + + + A R + + TNG Sbjct: 125 CERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVIINTNG 176 >gi|215405783|ref|ZP_03417964.1| putative transferase [Mycobacterium tuberculosis 02_1987] gi|215413658|ref|ZP_03422326.1| putative transferase [Mycobacterium tuberculosis 94_M4241A] gi|289747569|ref|ZP_06506947.1| transferase [Mycobacterium tuberculosis 02_1987] gi|294995359|ref|ZP_06801050.1| putative transferase [Mycobacterium tuberculosis 210] gi|298527206|ref|ZP_07014615.1| moaA/nifB/pqqE family protein [Mycobacterium tuberculosis 94_M4241A] gi|289688097|gb|EFD55585.1| transferase [Mycobacterium tuberculosis 02_1987] gi|298497000|gb|EFI32294.1| moaA/nifB/pqqE family protein [Mycobacterium tuberculosis 94_M4241A] gi|326905568|gb|EGE52501.1| transferase [Mycobacterium tuberculosis W-148] Length = 776 Score = 42.7 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 18/112 (16%) Query: 27 CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQL 70 RF GC G D C C F G Sbjct: 65 LRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYAITAAQ 124 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRG-FEIAVETNG 120 + + + + E E + +GGEP + + + A R + + TNG Sbjct: 125 CERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVIINTNG 176 >gi|167627884|ref|YP_001678384.1| radical SAM family protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597885|gb|ABZ87883.1| radical SAM family protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 353 Score = 42.7 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 24/112 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R S++C + ++ ++ +I+ VL+ Sbjct: 9 CNLKCV--HCRSSSEC----------EVVGHPDFSTEEGFRIIDNIVELA---NPVLVLS 53 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ--------GIDWICVS 134 GGEPLL+ D+ L + +G +A+ TNG++ + GI + +S Sbjct: 54 GGEPLLRADIFELAKYGANKGLRMALATNGSLVTDEICEKIKNSGISIVSLS 105 >gi|110598407|ref|ZP_01386679.1| Radical SAM [Chlorobium ferrooxidans DSM 13031] gi|110339941|gb|EAT58444.1| Radical SAM [Chlorobium ferrooxidans DSM 13031] Length = 345 Score = 42.7 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR C ++ ++++L + ++ +E +T Sbjct: 18 CNL-----------RCRHC--ASAATTRSRSNELSLEELLSICDQFPDLFVQE---VDIT 61 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GGEPLL+ + + LNK G + + TNG++ Sbjct: 62 GGEPLLRPEWFAVTTHLNKLGIPVRMVTNGSL 93 >gi|258592360|emb|CBE68669.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 400 Score = 42.7 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 16/112 (14%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL T F ++ + +++E G RY + Sbjct: 60 GCNLRCKMCGQWGDTG-----TYFNYDTAKLKRELKLEVIEGVVQELVPHGL---RYVDI 111 Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134 GGE L + L++ L + + TNGT+ G+D I +S Sbjct: 112 EGGETFLYPQIIELLRMLKRHRLFVKPVTNGTLLKKYAGELIDTGVDAIHIS 163 >gi|238018827|ref|ZP_04599253.1| hypothetical protein VEIDISOL_00686 [Veillonella dispar ATCC 17748] gi|237864593|gb|EEP65883.1| hypothetical protein VEIDISOL_00686 [Veillonella dispar ATCC 17748] Length = 337 Score = 42.7 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 21/107 (19%) Query: 27 CRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 R S CN C +C ++ +VD+ ++ G K Sbjct: 28 VRLSLTDACNFC-----------CPYC-RPAEITPQSQTQLLSVDEWMTILGAFHRIGVK 75 Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGFE--IAVETNGTIEPPQG 127 R LTGGEPLL + L+ + G+ I++ TNG++ + Sbjct: 76 AVR---LTGGEPLLYPHIEELLTRIKDTGWFEDISMTTNGSLLASRA 119 >gi|226311193|ref|YP_002771087.1| molybdenum cofactor biosynthesis protein A [Brevibacillus brevis NBRC 100599] gi|254811536|sp|C0Z9B3|MOAA_BREBN RecName: Full=Molybdenum cofactor biosynthesis protein A gi|226094141|dbj|BAH42583.1| molybdenum cofactor biosynthesis protein A [Brevibacillus brevis NBRC 100599] Length = 339 Score = 42.7 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 D+ + +CR+C D +F+ + +++ L + G + R +TG Sbjct: 22 DKCNFRCRYCMPADIFGPDFEFL----PQSKLLTFEEITRLTQIFTSLGVGKIR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134 GEPL++ ++P LI+ + + G + IA+ TNG++ G+D + VS Sbjct: 75 GEPLMRRNLPELIRMIREVEGVQDIAMTTNGSLLSRHAQALKEAGLDRVTVS 126 >gi|163783468|ref|ZP_02178459.1| Radical SAM [Hydrogenivirga sp. 128-5-R1-1] gi|159881232|gb|EDP74745.1| Radical SAM [Hydrogenivirga sp. 128-5-R1-1] Length = 362 Score = 42.7 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 51/111 (45%), Gaps = 25/111 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL+ C+ C + G ++D++ + ++ ++ R+ +L+ Sbjct: 33 CNLY-----------CKHC---YSSANQETKGELSLDEIRKVADDLV---NEKVRFAILS 75 Query: 92 GGEPLLQVDVPLIQA-LNKRGFEIAVETNGTI-------EPPQGIDWICVS 134 GGEPLL+ D+ + A L ++G + + TNG + + D++ +S Sbjct: 76 GGEPLLREDIYDVSAILREKGIKTYLSTNGLLINRDNVKLIRESFDYVGIS 126 >gi|320167238|gb|EFW44137.1| molybdenum cofactor synthesis 1 isoform 1 [Capsaspora owczarzaki ATCC 30864] Length = 517 Score = 42.7 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + G D++ L + G + R LT Sbjct: 53 CNL-----------RCVYCMPEHGVELSPNGALLTTDEIIRLAQLFVSQGVDKIR---LT 98 Query: 92 GGEPLLQVDV-PLIQALNKRG--FEIAVETNG 120 GGEP ++ D+ PL++ L + IA+ TNG Sbjct: 99 GGEPTVRKDLVPLVERLGQIDGLKSIALTTNG 130 >gi|302205485|gb|ADL09827.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Corynebacterium pseudotuberculosis C231] Length = 193 Score = 42.7 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 29/126 (23%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 A F GC L +C +C +Q G +++ + L+ + Sbjct: 1 MAAAF--TQGCPL-----------RCVYC--HNSQLQAFTPGAHSLAEFLSLLSSRHGLI 45 Query: 82 EKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG---------TIEPPQGIDWI 131 + V++GGEP + I A++ GF + + T G +P DW+ Sbjct: 46 DAA----VISGGEPTAVRGLGDAIAAIHNIGFPVGIHTCGYAPSRIAELLRDPATTPDWV 101 Query: 132 CVSPKA 137 + KA Sbjct: 102 GLDIKA 107 >gi|283131362|dbj|BAI63366.1| putative glycyl-radical activating family protein [Streptococcus dysgalactiae subsp. equisimilis] gi|283131422|dbj|BAI63423.1| putative glycyl-radical activating family protein [Streptococcus dysgalactiae subsp. equisimilis] gi|323128119|gb|ADX25416.1| glycyl-radical activating family protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 329 Score = 42.7 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 G + +L +I E + G L+GGE L Q + + L++A + G AVET Sbjct: 127 GESKTISELMAIIHEDDAFYDMSGGGVTLSGGECLAQPEGAIALLRACKEDGLNTAVETA 186 Query: 120 G 120 G Sbjct: 187 G 187 >gi|282882974|ref|ZP_06291578.1| radical SAM domain protein [Peptoniphilus lacrimalis 315-B] gi|281297181|gb|EFA89673.1| radical SAM domain protein [Peptoniphilus lacrimalis 315-B] Length = 449 Score = 42.7 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 29/113 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRY-C 88 CNL +C++C F KG R ++ D ++ + Sbjct: 103 CNL-----------RCKYC---FASQGDFKGKRLLMDLQTGKDALDFLIKSSGYRRNLEV 148 Query: 89 VLTGGEPLLQVDVPLIQALNKRG----------FEIAVETNGTIEPPQGIDWI 131 GGEPL+ + +++ L + G F + TNGT ID+I Sbjct: 149 DFFGGEPLM--NFEVVKKLVEYGRIQEKKYNKHFRFTITTNGTYLTDDKIDFI 199 >gi|258514536|ref|YP_003190758.1| Radical SAM domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257778241|gb|ACV62135.1| Radical SAM domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 396 Score = 42.7 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C C + K G + + I++ E + + Sbjct: 47 CNL-----------KCIHC---YSNSDNKKYEGELTTAEAKNFIKDL---AEFKVPVILF 89 Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +GGEPL++ D L + G + TNGT+ Sbjct: 90 SGGEPLIRKDFFELAACASDLGIRCTISTNGTL 122 >gi|15610865|ref|NP_218246.1| transferase [Mycobacterium tuberculosis H37Rv] gi|15843350|ref|NP_338387.1| moaA/nifB/pqqE family protein [Mycobacterium tuberculosis CDC1551] gi|148663595|ref|YP_001285118.1| putative transferase [Mycobacterium tuberculosis H37Ra] gi|148824934|ref|YP_001289688.1| transferase [Mycobacterium tuberculosis F11] gi|218755512|ref|ZP_03534308.1| putative transferase [Mycobacterium tuberculosis GM 1503] gi|254552842|ref|ZP_05143289.1| transferase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289555994|ref|ZP_06445204.1| transferase [Mycobacterium tuberculosis KZN 605] gi|289763910|ref|ZP_06523288.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|297636409|ref|ZP_06954189.1| transferase [Mycobacterium tuberculosis KZN 4207] gi|297733403|ref|ZP_06962521.1| transferase [Mycobacterium tuberculosis KZN R506] gi|306778088|ref|ZP_07416425.1| transferase [Mycobacterium tuberculosis SUMu001] gi|306778620|ref|ZP_07416957.1| transferase [Mycobacterium tuberculosis SUMu002] gi|306786643|ref|ZP_07424965.1| transferase [Mycobacterium tuberculosis SUMu003] gi|306791328|ref|ZP_07429630.1| transferase [Mycobacterium tuberculosis SUMu005] gi|306969972|ref|ZP_07482633.1| transferase [Mycobacterium tuberculosis SUMu009] gi|313660734|ref|ZP_07817614.1| transferase [Mycobacterium tuberculosis KZN V2475] gi|2960153|emb|CAA18051.1| POSSIBLE TRANSFERASE [Mycobacterium tuberculosis H37Rv] gi|13883713|gb|AAK48201.1| moaA/nifB/pqqE family protein [Mycobacterium tuberculosis CDC1551] gi|148507747|gb|ABQ75556.1| putative transferase [Mycobacterium tuberculosis H37Ra] gi|148723461|gb|ABR08086.1| hypothetical transferase [Mycobacterium tuberculosis F11] gi|289440626|gb|EFD23119.1| transferase [Mycobacterium tuberculosis KZN 605] gi|289711416|gb|EFD75432.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|308213614|gb|EFO73013.1| transferase [Mycobacterium tuberculosis SUMu001] gi|308328347|gb|EFP17198.1| transferase [Mycobacterium tuberculosis SUMu002] gi|308328750|gb|EFP17601.1| transferase [Mycobacterium tuberculosis SUMu003] gi|308340085|gb|EFP28936.1| transferase [Mycobacterium tuberculosis SUMu005] gi|308352525|gb|EFP41376.1| transferase [Mycobacterium tuberculosis SUMu009] gi|328460503|gb|AEB05926.1| transferase [Mycobacterium tuberculosis KZN 4207] Length = 776 Score = 42.7 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 18/112 (16%) Query: 27 CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQL 70 RF GC G D C C F G Sbjct: 65 LRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYAITAAQ 124 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRG-FEIAVETNG 120 + + + + E E + +GGEP + + + A R + + TNG Sbjct: 125 CERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVIINTNG 176 >gi|305662866|ref|YP_003859154.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230] gi|304377435|gb|ADM27274.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230] Length = 280 Score = 42.7 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 38/169 (22%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 GCNL C +C + + + + G Y+ +A + I E R+ Sbjct: 48 GCNLM-----------CIYCWSYRINSMYRSIGVFYSPYDVAHKL--MTIARENRYRFIR 94 Query: 90 LTGGEP------LLQVDVPLIQA-LNKRGFEIAVETNGTI---------EPPQGIDWIC- 132 +TGGEP LLQV L+ + G I +ETNG + E D+I Sbjct: 95 ITGGEPTLAYTHLLQVLENLVSMGIRDIGRFI-IETNGILLGYKPDIIRELVNYNDFITV 153 Query: 133 -VSPKAGCDL---KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177 VS K + + G K + + +N + + + + P+ Sbjct: 154 RVSLKGCSEEEFSIVTGAD--KNFYSYQLMGIKNLVDYSIDTRVVIPIS 200 >gi|188527386|ref|YP_001910073.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori Shi470] gi|188143626|gb|ACD48043.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori Shi470] Length = 293 Score = 42.7 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 56/157 (35%), Gaps = 22/157 (14%) Query: 52 TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKR 110 T G +D + + ++ G K+ R +TGGEPLL+ I L+ Sbjct: 4 TPLNFFDGE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDEFIAKLHAY 58 Query: 111 GFEIA--VETNGTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQELKLVFPQVNV 158 E+A + TNG + D + V S K+ LKI LK + Sbjct: 59 NKEVALVLSTNGFLLKKMAKDLKNAGLSRVNVSLDSLKSDRVLKISQKDALKNTLEGIEE 118 Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 S E + + ++ M +E L + Y Sbjct: 119 SLEVGLKL---KLNMVVMKSVNDDEILEL-LEYAKNR 151 >gi|113478316|ref|YP_724377.1| radical SAM family protein [Trichodesmium erythraeum IMS101] gi|110169364|gb|ABG53904.1| Radical SAM [Trichodesmium erythraeum IMS101] Length = 386 Score = 42.7 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%) Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PL 103 A C FC +F + L + ++ I + RY V TGGEP L ++ Sbjct: 57 ANCGFC--NFAR-DTFPKEKTKFVNLNEGLDSINILFREGIRYLVFTGGEPTLNPNLISF 113 Query: 104 IQALNKRGFEIAVETNGTIEPPQGI 128 + + G ++ V TNG + P+ I Sbjct: 114 VDHATRLGIKVMVVTNGGLLTPKKI 138 >gi|308274253|emb|CBX30852.1| hypothetical protein N47_E43640 [uncultured Desulfobacterium sp.] Length = 342 Score = 42.3 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR C + T + +V++ +E + Sbjct: 38 CNL-----------RCRGCG-KIAYPEETLNRQLSVEECLSASKE------CPAPVVSIA 79 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPLL D+P ++Q L + + TN + ID S ++ + G +E Sbjct: 80 GGEPLLHTDIPRIVQKLVAHKKFVYLCTN-ALLAANRIDEFQPSQYLAFNVHLDGLEE 136 >gi|167616556|ref|ZP_02385187.1| radical SAM domain protein protein [Burkholderia thailandensis Bt4] Length = 455 Score = 42.3 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 24/116 (20%) Query: 26 FCRF---SGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTKGGRYNVDQLADLIEEQWITG 81 F R CNL C + D+ +V +G +VD+ + LI+E G Sbjct: 122 FMRLHLTQRCNLTC--------VHC-YADSSPYVTSEGE----ISVDRWSRLIDEFADAG 168 Query: 82 EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI--CVS 134 + + TGGE L+ LI+ ++R ++ + +NG + + +D I CV Sbjct: 169 GER---VLFTGGEALIYKGCDLLIRKAHERALDVTLFSNG-LLIDRYLDLIRACVD 220 >gi|304408845|ref|ZP_07390466.1| Radical SAM domain protein [Shewanella baltica OS183] gi|304352666|gb|EFM17063.1| Radical SAM domain protein [Shewanella baltica OS183] Length = 286 Score = 42.3 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 17/105 (16%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCV 89 NL + S +C CDT + Y V+++ ++ Q Sbjct: 60 NLNNKPRIRWDSERCSQCDTCLAVCPKQASPKVTHYTVEEILGILHSQR----HFINGIT 115 Query: 90 LTGGEPLLQVDVPLIQALNK--------RGFEIAVETNGTIEPPQ 126 ++GGE LQ +P I AL K ++TNG++ Sbjct: 116 VSGGEASLQ--LPFILALFKGIKATESLSHLTCMLDTNGSLSLTG 158 >gi|323341138|ref|ZP_08081386.1| pyruvate formate-lyase activating enzyme [Lactobacillus ruminis ATCC 25644] gi|323091559|gb|EFZ34183.1| pyruvate formate-lyase activating enzyme [Lactobacillus ruminis ATCC 25644] Length = 274 Score = 42.3 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 31/106 (29%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLI---EE 76 RF GCN+ +C+FC DT + G D++ E Sbjct: 36 IRFVVFMQGCNM-----------RCKFCHNPDT----WKKNVGTTMTADEVLKKALPYRE 80 Query: 77 QWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 W L+GGE LLQ + + L + G ++T G Sbjct: 81 FWGEQGG----ITLSGGEILLQPEFALDLFTKCKELGISTCLDTCG 122 >gi|297155501|gb|ADI05213.1| pyrroloquinoline quinone biosynthesis protein PqqE [Streptomyces bingchenggensis BCW-1] Length = 368 Score = 42.3 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 17/91 (18%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GC L C +C ++ + ++ A+++ + G L Sbjct: 17 GCPL-----------HCPYCSNPLELVR--RSRELTGEEWAEVLRQAGELGVVHTH---L 60 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPLL+ D+ + A G + T+G Sbjct: 61 SGGEPLLRTDLETITAAAESAGIYTQLVTSG 91 >gi|303327190|ref|ZP_07357632.1| putative pyruvate formate-lyase activating enzyme [Desulfovibrio sp. 3_1_syn3] gi|302863178|gb|EFL86110.1| putative pyruvate formate-lyase activating enzyme [Desulfovibrio sp. 3_1_syn3] Length = 297 Score = 42.3 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119 G ++++L +++ + L+GGEP Q + L ++ L G VET+ Sbjct: 102 GKTMSLEELFRELKKDTSYYQMSSGGVTLSGGEPFAQGERLLDVLEGLKCLGLGTVVETS 161 Query: 120 GTIEP 124 G + P Sbjct: 162 GLVPP 166 >gi|322508437|gb|ADX03891.1| pqqE [Acinetobacter baumannii 1656-2] Length = 384 Score = 42.3 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 60/174 (34%), Gaps = 20/174 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C D+ + + D+ E+ G + + Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFDVFEQARQMGAVQLGF-- 61 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140 +GGEPL+ Q L+ ++ GF + T+G + G+D I +S +A Sbjct: 62 -SGGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTEQRISHLKQAGLDHIQISFQASDP 120 Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 + K F Q +D+ L + + + I C + Sbjct: 121 VVNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIDKIIELCLE 173 >gi|187927397|ref|YP_001897884.1| pyrroloquinoline quinone biosynthesis protein PqqE [Ralstonia pickettii 12J] gi|187724287|gb|ACD25452.1| coenzyme PQQ biosynthesis protein E [Ralstonia pickettii 12J] Length = 386 Score = 42.3 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 9/91 (9%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 LW E R C FC + + + + Q D++ + G + + Sbjct: 17 PLWLLAELTHRCPLHCVFC---YNPVDFARRRDELSTAQWIDVLRQARQLGAAQLGF--- 70 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 +GGEPLL+ D+ L+ + GF + T+G Sbjct: 71 SGGEPLLRDDLEELVAEGRQLGFYTNLITSG 101 >gi|222100726|ref|YP_002535294.1| AstB/chuR-related protein [Thermotoga neapolitana DSM 4359] gi|221573116|gb|ACM23928.1| AstB/chuR-related protein [Thermotoga neapolitana DSM 4359] Length = 482 Score = 42.3 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 21/92 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + G+ G K + D++ D++++ G ++T Sbjct: 120 CNL-----------NCVGC---YAGLYGRKYE-LSHDEVRDILKQANDLGIYFF---IIT 161 Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 GGEP + + + F + TNGT+ Sbjct: 162 GGEPFFWPHLMDIFEEFKDSYFLVY--TNGTL 191 >gi|156934609|ref|YP_001438525.1| pyruvate formate lyase-activating enzyme 1 [Cronobacter sakazakii ATCC BAA-894] gi|156532863|gb|ABU77689.1| hypothetical protein ESA_02443 [Cronobacter sakazakii ATCC BAA-894] Length = 246 Score = 42.3 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V++L + G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEELMKEVVTYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 72 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 108 >gi|170723984|ref|YP_001751672.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas putida W619] gi|169761987|gb|ACA75303.1| coenzyme PQQ biosynthesis protein E [Pseudomonas putida W619] Length = 382 Score = 42.3 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C +G + Q ++ E G + + Sbjct: 16 PLWLLAELTYRCPLQCPYCSNPLDF--AEQGKELSTAQWFKVMAEAREMGAAQ---IGFS 70 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI + G+ + T+G Sbjct: 71 GGEPLVRQDLAELIGEARRLGYYTNLITSG 100 >gi|330008426|ref|ZP_08306239.1| glycyl-radical enzyme activating protein family protein [Klebsiella sp. MS 92-3] gi|328535136|gb|EGF61644.1| glycyl-radical enzyme activating protein family protein [Klebsiella sp. MS 92-3] Length = 299 Score = 42.3 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G +V+++ + ++ G L+GGEP + + L +A ++ G AVET Sbjct: 101 GEEKSVEEIMATVLRDKPFYDRSGGGITLSGGEPFMNPTLAQALFEASHQAGIHTAVET 159 >gi|70607223|ref|YP_256093.1| molybdenum cofactor biosynthesis protein A [Sulfolobus acidocaldarius DSM 639] gi|76363232|sp|Q4J8T0|MOAA_SULAC RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|68567871|gb|AAY80800.1| molybdenum cofactor biosynthesis protein A [Sulfolobus acidocaldarius DSM 639] Length = 313 Score = 42.3 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 8/76 (10%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQ 105 C FC + + + DQ++ L+ + + E R LTGGEP L+ D+P +I Sbjct: 24 CFFC---HMEGENDGDSLLSADQIS-LVAQIGM--EFGIRTVKLTGGEPTLRRDLPEIIS 77 Query: 106 ALNKRGF-EIAVETNG 120 L + G E+++ TNG Sbjct: 78 KLKEVGIKEVSMTTNG 93 >gi|262041082|ref|ZP_06014300.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041532|gb|EEW42585.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 299 Score = 42.3 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G +V+++ + ++ G L+GGEP + + L +A ++ G AVET Sbjct: 101 GEEKSVEEIMATVLRDKPFYDRSGGGITLSGGEPFMNPTLAQALFEASHQAGIHTAVET 159 >gi|225420210|ref|ZP_03762513.1| hypothetical protein CLOSTASPAR_06553 [Clostridium asparagiforme DSM 15981] gi|225041156|gb|EEG51402.1| hypothetical protein CLOSTASPAR_06553 [Clostridium asparagiforme DSM 15981] Length = 457 Score = 42.3 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 14/105 (13%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYN---VDQLADLIEEQWITGEKEGRYCVLTG 92 R + +C C +V Q + G + L D I E G +LTG Sbjct: 128 CLELTYRCNEKCIHC---YVDDQESGAGEMSFSDYRTLLDEIRELGCMG------VLLTG 178 Query: 93 GEPLLQVDVPLIQALNKR-GFEIAVETNGTIEPPQGID-WICVSP 135 GEP L D I +R G + + TNG +D I + P Sbjct: 179 GEPTLHRDFFEIAFYARRIGLMVDIYTNGLYVDDGMMDRLISLRP 223 >gi|257051819|ref|YP_003129652.1| Radical SAM domain protein [Halorhabdus utahensis DSM 12940] gi|256690582|gb|ACV10919.1| Radical SAM domain protein [Halorhabdus utahensis DSM 12940] Length = 401 Score = 42.3 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 7/73 (9%) Query: 51 DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK 109 DT G G + +I++ G R+ GGEPLL+ D+ LI+ ++ Sbjct: 56 DTA---GPGHGDGELTTGEATAVIDDLAGYGVAAIRFA---GGEPLLRDDLETLIERASE 109 Query: 110 RGFEIAVETNGTI 122 G + TNGT+ Sbjct: 110 AGLRTELSTNGTL 122 >gi|330956955|gb|EGH57215.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. maculicola str. ES4326] Length = 389 Score = 42.3 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C + +G +Q +++E G + + Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGLELTTEQWFKVMQEAREMGAAQ---IGFS 76 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI + GF + T+G Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSG 106 >gi|260597299|ref|YP_003209870.1| pyruvate formate lyase-activating enzyme 1 [Cronobacter turicensis z3032] gi|260216476|emb|CBA29623.1| Pyruvate formate-lyase 1-activating enzyme [Cronobacter turicensis z3032] Length = 246 Score = 42.3 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V++L + G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEELMKEVVTYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 72 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 108 >gi|256830133|ref|YP_003158861.1| glycyl-radical enzyme activating protein family [Desulfomicrobium baculatum DSM 4028] gi|256579309|gb|ACU90445.1| glycyl-radical enzyme activating protein family [Desulfomicrobium baculatum DSM 4028] Length = 306 Score = 42.3 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 G ++ V ++ IE++ +GGEPL Q D L+ A AV+T+ Sbjct: 108 GRKWTVLEVMAEIEKETPFFAGNQGGVTFSGGEPLAQPDFLEALLVACKDLDLHRAVDTS 167 Query: 120 G 120 G Sbjct: 168 G 168 >gi|152969487|ref|YP_001334596.1| pyruvate formate lyase-activating enzyme 1 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206581035|ref|YP_002239448.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella pneumoniae 342] gi|238893959|ref|YP_002918693.1| pyruvate formate lyase-activating enzyme 1 [Klebsiella pneumoniae NTUH-K2044] gi|288936299|ref|YP_003440358.1| pyruvate formate-lyase activating enzyme [Klebsiella variicola At-22] gi|290510646|ref|ZP_06550016.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella sp. 1_1_55] gi|330014097|ref|ZP_08307854.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella sp. MS 92-3] gi|150954336|gb|ABR76366.1| pyruvate formate lyase activating enzyme 1 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206570093|gb|ACI11869.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella pneumoniae 342] gi|238546275|dbj|BAH62626.1| pyruvate formate lyase activating enzyme 1 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|288891008|gb|ADC59326.1| pyruvate formate-lyase activating enzyme [Klebsiella variicola At-22] gi|289777362|gb|EFD85360.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella sp. 1_1_55] gi|328533278|gb|EGF60031.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella sp. MS 92-3] Length = 246 Score = 42.3 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V++L + G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEELMKEVVTYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 72 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 108 >gi|320101319|ref|YP_004176911.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfurococcus mucosus DSM 2162] gi|319753671|gb|ADV65429.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfurococcus mucosus DSM 2162] Length = 248 Score = 42.3 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 16/99 (16%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCNL + +VD+L ++ G + + Sbjct: 26 LCGCNLKCPFCHNWRL----------ATGDREVCRPLDVDRLLSEVDSSK--GFIDYLHV 73 Query: 89 VLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPP 125 TGGEPLLQ L + + + G ++V TN T+ P Sbjct: 74 --TGGEPLLQYRGLAGLFRRVKEIGVPVSVNTNLTLYKP 110 >gi|312794519|ref|YP_004027442.1| Radical SAM domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181659|gb|ADQ41829.1| Radical SAM domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 430 Score = 42.3 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 17/109 (15%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 C+ C + + +++ + ++ + +++GGEP L+ D ++ Sbjct: 101 CKGC---YSFNKYRNKEDFDL-SVDVFVDSIKQLKNYGLKRVIISGGEPTLRDD---LEV 153 Query: 107 LNKRGFEIAVE-----TNGTIEPPQGIDWI--CVSPKAGCDLKIKGGQE 148 L + I++E TNG P + I+ + CV + I G E Sbjct: 154 LLREIKNISIEYVCLITNGIYFPEKLINVVKECVD---EVSVSIDGYNE 199 >gi|152969415|ref|YP_001334524.1| putative pyruvate formate lyase activating enzyme [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893884|ref|YP_002918618.1| putative pyruvate formate lyase activating enzyme [Klebsiella pneumoniae NTUH-K2044] gi|150954264|gb|ABR76294.1| putative pyruvate formate lyase activating enzyme [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238546200|dbj|BAH62551.1| putative pyruvate formate lyase activating enzyme [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 299 Score = 42.3 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G +V+++ + ++ G L+GGEP + + L +A ++ G AVET Sbjct: 101 GEEKSVEEIMATVLRDKPFYDRSGGGITLSGGEPFMNPTLAQALFEASHQAGIHTAVET 159 >gi|237748413|ref|ZP_04578893.1| molybdenum cofactor biosynthesis protein A [Oxalobacter formigenes OXCC13] gi|229379775|gb|EEO29866.1| molybdenum cofactor biosynthesis protein A [Oxalobacter formigenes OXCC13] Length = 372 Score = 42.3 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 31/151 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D F+ + +++A L G ++ R LTG Sbjct: 50 DRCNFRCVYCMPKQVFGKDFRFI----PHSDMLSFEEIARLARLFVARGVEKIR---LTG 102 Query: 93 GEPLLQVDVP-LIQAL------NKRGFEIAVETNGTIEP-------PQGIDWICVSPKAG 138 GEPLL+ +V LI+ L R ++ + TNG++ G+ I VS A Sbjct: 103 GEPLLRKNVERLIEQLSRLKTPEGRPIDLTLTTNGSMLAKKAQTLFDAGLKRITVSLDAL 162 Query: 139 CDLKIKGGQELKLVFPQV--NVSPENYIGFD 167 D + ++ V + +GFD Sbjct: 163 DDTVFRQMNDVDFSVRDVLHGIDTALAVGFD 193 >gi|194366021|ref|YP_002028631.1| molybdenum cofactor biosynthesis protein A [Stenotrophomonas maltophilia R551-3] gi|226707388|sp|B4SL67|MOAA_STRM5 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|194348825|gb|ACF51948.1| molybdenum cofactor biosynthesis protein A [Stenotrophomonas maltophilia R551-3] Length = 326 Score = 42.3 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 13/91 (14%) Query: 46 QCRFC--DTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101 +C +C D G Q R+ VD++A L+ G + R LTGGEP L+ D+ Sbjct: 26 RCSYCLPD----GYQVDGRPRFLQVDEIARLVRAFAALGMSKIR---LTGGEPSLRKDLD 78 Query: 102 PLIQALNKR-GFE-IAVETNGTIEPPQGIDW 130 +I + G +A+ TNGT+ P + W Sbjct: 79 EIIATVAAAPGIRKVAITTNGTLLPRRLPGW 109 >gi|70732962|ref|YP_262735.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas fluorescens Pf-5] gi|83288391|sp|Q4K4U8|PQQE_PSEF5 RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|68347261|gb|AAY94867.1| coenzyme PQQ synthesis protein E [Pseudomonas fluorescens Pf-5] Length = 389 Score = 42.3 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C +G + +Q + E G + + + Sbjct: 23 PLWLLAELTYRCPLQCPYCSNPLDF--AEQGKELSTEQWIKVFREAREMGAAQLGF---S 77 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI K GF + T+G Sbjct: 78 GGEPLVRQDLAELIGEARKLGFYTNLITSG 107 >gi|311281574|ref|YP_003943805.1| glycyl-radical enzyme activating protein family [Enterobacter cloacae SCF1] gi|308750769|gb|ADO50521.1| glycyl-radical enzyme activating protein family [Enterobacter cloacae SCF1] Length = 291 Score = 42.3 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 62/193 (32%), Gaps = 31/193 (16%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCN-----------LWSGREQDRLSAQCRFC-- 50 IF +L G G VF F GC L R ++C C Sbjct: 23 IFNIQRYSLNDGRGIRT---VVF--FKGCPHRCPWCANPESLSPHIHTVRRESKCLHCAP 77 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D + + G +D L + + + G L+GGE L+Q Sbjct: 78 CLRDANECPSGAFENIGRDVTLDALVQEVMKDDVFFRASGGGVTLSGGEVLMQAPFAARF 137 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP-QVNVSPEN 162 + L + G A+ET G + + + DLKI ++ KLV + N Sbjct: 138 LARLRQLGVHTAMETAGDAPLSRLLPVANQCDEVLFDLKIMDARQAKLVLNLNLPRVLAN 197 Query: 163 YIGFDFERFSLQP 175 + + P Sbjct: 198 FRHLAASGICVIP 210 >gi|239909068|ref|YP_002955810.1| ribonucleoside-triphosphate reductase activating enzyme [Desulfovibrio magneticus RS-1] gi|239798935|dbj|BAH77924.1| ribonucleoside-triphosphate reductase activating enzyme [Desulfovibrio magneticus RS-1] Length = 256 Score = 42.3 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 35/116 (30%), Gaps = 24/116 (20%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR-YC 88 GC C +C + + W+ G K Sbjct: 52 QGCP-----------WGCPYC------HNEPLREITDAVEHDSASVLAWLEGRKGLLDAV 94 Query: 89 VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAG 138 V +GGEP LQ + ++ A+ GF + T G DW+ + KA Sbjct: 95 VFSGGEPTLQDGLADMLAAVRAMGFHTGLHTTGMFPKALSAVLPLCDWVGLDVKAP 150 >gi|17231761|ref|NP_488309.1| hypothetical protein alr4269 [Nostoc sp. PCC 7120] gi|17133404|dbj|BAB75968.1| alr4269 [Nostoc sp. PCC 7120] Length = 338 Score = 42.3 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 + GGEPLL + +++ L +R + + TNG + + +D SP + Sbjct: 72 GAPVVSIPGGEPLLHPQIDEIVKGLVERKKYVYLCTNG-LLLEKSLDKFQPSPYLTFSVH 130 Query: 143 IKGGQE 148 + G QE Sbjct: 131 LDGLQE 136 >gi|322372738|ref|ZP_08047274.1| putative coenzyme PQQ synthesis protein [Streptococcus sp. C150] gi|321277780|gb|EFX54849.1| putative coenzyme PQQ synthesis protein [Streptococcus sp. C150] Length = 372 Score = 42.3 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 5/88 (5%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L +R + C +C + G +K G +V++L + E + G +TGG Sbjct: 10 LVDVCVTNRCNLNCSYC-SAEAGPFASKKGEMSVEKLDSVFRELDLMGVPR---VGVTGG 65 Query: 94 EPLLQVD-VPLIQALNKRGFEIAVETNG 120 EP ++ D + +++A N+ F + TNG Sbjct: 66 EPFMREDILDILKAFNQYRFAKVLNTNG 93 >gi|298675495|ref|YP_003727245.1| radical SAM domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298288483|gb|ADI74449.1| Radical SAM domain protein [Methanohalobium evestigatum Z-7303] Length = 205 Score = 42.3 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 8/86 (9%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNV---DQLADLIEEQWITGEKEGRYCVLTG-GEPL 96 +R +A+C FC G G + + ++ + + R V TG GEP Sbjct: 29 NRCTARCVFC--VRDLSDGVYGYNLRLLYEPSVEEIKQALEKNNFLKYREIVFTGFGEPT 86 Query: 97 --LQVDVPLIQALNKRGFEIAVETNG 120 L + LI+ L G + ++TNG Sbjct: 87 VRLDDMLSLIRWLKGHGAYVRLDTNG 112 >gi|262040998|ref|ZP_06014220.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041692|gb|EEW42741.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 246 Score = 42.3 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V++L + G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEELMKEVVTYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 72 GGVTASGGEAILQAEFVHDWFRACKKEGIHTCLDTNG 108 >gi|225869329|ref|YP_002745277.1| Radical SAM superfamily protein [Streptococcus equi subsp. zooepidemicus] gi|225702605|emb|CAX00633.1| Radical SAM superfamily protein [Streptococcus equi subsp. zooepidemicus] Length = 372 Score = 42.3 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 5/88 (5%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L +R + C +C + G +K G +V++L + E + G +TGG Sbjct: 10 LVDVCVTNRCNLNCSYC-SAEAGPFASKKGEMSVEKLDSVFRELDLMGVPR---VGVTGG 65 Query: 94 EPLLQVD-VPLIQALNKRGFEIAVETNG 120 EP ++ D + +++A N+ F + TNG Sbjct: 66 EPFMREDILDILKAFNQYRFAKVLNTNG 93 >gi|254252868|ref|ZP_04946186.1| Molybdenum cofactor biosynthesis enzyme [Burkholderia dolosa AUO158] gi|124895477|gb|EAY69357.1| Molybdenum cofactor biosynthesis enzyme [Burkholderia dolosa AUO158] Length = 369 Score = 42.3 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 25/114 (21%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + +++ + + ++ E +TGGE Sbjct: 45 DRCNFRCVYCMPREVFDKDYPFLPHS--ALLAHEEI-ERVARLFVAHGVEK--IRITGGE 99 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 PLL+ ++ LI+ L + R ++ + TNG++ G+ + VS Sbjct: 100 PLLRKNLEFLIERLARLTTHDGRPLDLTLTTNGSLLARKARALKDAGLTRVTVS 153 >gi|31794901|ref|NP_857394.1| transferase [Mycobacterium bovis AF2122/97] gi|121639645|ref|YP_979869.1| putative transferase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224992141|ref|YP_002646830.1| putative transferase [Mycobacterium bovis BCG str. Tokyo 172] gi|31620499|emb|CAD95942.1| POSSIBLE TRANSFERASE [Mycobacterium bovis AF2122/97] gi|121495293|emb|CAL73779.1| Possible transferase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224775256|dbj|BAH28062.1| putative transferase [Mycobacterium bovis BCG str. Tokyo 172] Length = 776 Score = 42.3 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 32/112 (28%), Gaps = 18/112 (16%) Query: 27 CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQL 70 RF GC G D C C F G Sbjct: 65 LRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYAITAAQ 124 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRG-FEIAVETNG 120 + + + + E E + +GGEP + + + A R I + TNG Sbjct: 125 CERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTIIINTNG 176 >gi|254482495|ref|ZP_05095734.1| molybdenum cofactor biosynthesis protein A [marine gamma proteobacterium HTCC2148] gi|214037186|gb|EEB77854.1| molybdenum cofactor biosynthesis protein A [marine gamma proteobacterium HTCC2148] Length = 346 Score = 42.3 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 13/87 (14%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D +FV K ++++L + G + R LTGGEPL+ Sbjct: 36 DRCDFRCVYCMAEDMEFV----PKAEVLSLEELYQVARAFTELGVGKIR---LTGGEPLI 88 Query: 98 QVDV-PLIQALNKR-GF-EIAVETNGT 121 + +V LI+ + + G ++A+ TNG+ Sbjct: 89 RNNVMSLIKRMGELPGLDQLAITTNGS 115 >gi|147678756|ref|YP_001212971.1| pyruvate-formate lyase-activating enzyme [Pelotomaculum thermopropionicum SI] gi|146274853|dbj|BAF60602.1| pyruvate-formate lyase-activating enzyme [Pelotomaculum thermopropionicum SI] Length = 303 Score = 42.3 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 G R +VD++ ++I++ + G ++GGE L Q + L++ ++ G ++T+ Sbjct: 105 GKRVSVDEVMNVIKKDIHFYQDSGGGVTISGGEALFQPNFTEALLKECHELGIHTCLDTS 164 Query: 120 G 120 G Sbjct: 165 G 165 >gi|319898144|ref|YP_004136341.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae F3031] gi|317433650|emb|CBY82035.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae F3031] Length = 246 Score = 42.3 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G +V++L + Sbjct: 21 IRFILFMQGC-----------LMRCKYCHNRDT----WDLDGGREISVEELMKEVVSYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A G ++TNG Sbjct: 66 FMNATGGGVTASGGEAILQAEFVRDWFRACKAEGINTCLDTNG 108 >gi|307086525|ref|ZP_07495638.1| putative radical SAM domain protein [Mycobacterium tuberculosis SUMu012] gi|308364116|gb|EFP52967.1| putative radical SAM domain protein [Mycobacterium tuberculosis SUMu012] Length = 571 Score = 42.3 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 18/112 (16%) Query: 27 CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQL 70 RF GC G D C C F G Sbjct: 77 LRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYAITAAQ 136 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRG-FEIAVETNG 120 + + + + E E + +GGEP + + + A R + + TNG Sbjct: 137 CERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVIINTNG 188 >gi|303327027|ref|ZP_07357469.1| putative pyruvate formate-lyase 1 activating enzyme [Desulfovibrio sp. 3_1_syn3] gi|302863015|gb|EFL85947.1| putative pyruvate formate-lyase 1 activating enzyme [Desulfovibrio sp. 3_1_syn3] Length = 322 Score = 42.3 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 G + NVD + +E+ + G L+GGEPLLQ D + L++ R + AVET Sbjct: 123 GKKRNVDDVLSSVEQDAAFYSRSGGGMTLSGGEPLLQADFALALLRQARVRRLKTAVETC 182 Query: 120 GTIEP 124 G + Sbjct: 183 GMVPA 187 >gi|255022186|ref|ZP_05294188.1| Radical SAM domain Fe-S oxidoreductase [Acidithiobacillus caldus ATCC 51756] gi|254968368|gb|EET25928.1| Radical SAM domain Fe-S oxidoreductase [Acidithiobacillus caldus ATCC 51756] Length = 367 Score = 42.3 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 20/117 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C T R +VD+ EE + Sbjct: 38 CNLAC--------AGCG----KIDYPDETLDKRLSVDECIGAAEECG------APIVSIA 79 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147 GGEPL+ ++P ++Q L +R + + TN + + +D SP + + G + Sbjct: 80 GGEPLIHKEMPAIVQGLIQRKRFVYLCTN-ALLLKKRMDDYKPSPYLTFSVHLDGNE 135 >gi|218884694|ref|YP_002429076.1| Predicted Fe-S oxidoreductase [Desulfurococcus kamchatkensis 1221n] gi|218766310|gb|ACL11709.1| Predicted Fe-S oxidoreductase [Desulfurococcus kamchatkensis 1221n] Length = 572 Score = 42.3 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 8/90 (8%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 L + +R + C +C F + + +DQ+ +++ G LTG Sbjct: 124 LVNMVVTNRCNLSCWYC---FFYSEASGYVYEPRLDQIREMVRSIKKQGVTVA--IQLTG 178 Query: 93 GEPLL-QVDVPLIQALNKRGFE-IAVETNG 120 GEPLL + V +++ L + G I + TNG Sbjct: 179 GEPLLREDLVDIVKLLKEEGVRHIQLNTNG 208 >gi|163858381|ref|YP_001632679.1| heme biosynthesis protein [Bordetella petrii DSM 12804] gi|163262109|emb|CAP44411.1| heme biosynthesis protein [Bordetella petrii] Length = 396 Score = 42.3 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + R + C+ C N ++ +I++ G R +L+G Sbjct: 31 PVVIWNLLRRCNLTCKHC--YATSADSPFRNELNTEEALRVIDDLHDAG---VRVLILSG 85 Query: 93 GEPLLQVDVPLIQALNKR--GFEIAVETNGTIEPPQGIDWI 131 GEPLL+ D+ A + R GF +A+ +NGT+ I+ I Sbjct: 86 GEPLLRPDL-FQLAGHARVKGFFVALSSNGTLIDAHNIEQI 125 >gi|167578417|ref|ZP_02371291.1| radical SAM domain protein protein [Burkholderia thailandensis TXDOH] Length = 429 Score = 42.3 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 24/116 (20%) Query: 26 FCRF---SGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTKGGRYNVDQLADLIEEQWITG 81 F R CNL C + D+ +V +G +VD+ + LI+E G Sbjct: 96 FMRLHLTQRCNLTC--------VHC-YADSSPYVTSEGE----ISVDRWSRLIDEFADAG 142 Query: 82 EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI--CVS 134 + + TGGE L+ LI+ ++R ++ + +NG + + +D I CV Sbjct: 143 GER---VLFTGGEALIYKGCDLLIRKAHERALDVTLFSNG-LLIDRYLDLIRACVD 194 >gi|262396452|ref|YP_003288305.1| pyruvate formate-lyase activating enzyme [Vibrio sp. Ex25] gi|262340046|gb|ACY53840.1| pyruvate formate-lyase activating enzyme [Vibrio sp. Ex25] Length = 309 Score = 42.3 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G D L +++ ++ +GGEPL+Q D+ L Q L+ A+E+ Sbjct: 110 GEAAKSDDLFEVLMRDKPFYDQSQGGVTFSGGEPLMQADLVAELAQRLHDNQVSTAIES 168 >gi|148642598|ref|YP_001273111.1| pyruvate formate-lyase activating enzyme, PflA [Methanobrevibacter smithii ATCC 35061] gi|148551615|gb|ABQ86743.1| pyruvate formate-lyase activating enzyme, PflA [Methanobrevibacter smithii ATCC 35061] Length = 104 Score = 42.3 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 11/68 (16%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GC L +C +C F + +Y++D+L + ++ + V Sbjct: 29 GCPL-----------RCAYCFNPFTWDGSVEPKKYSIDELYEEVKLDNLYFLATEGDLVF 77 Query: 91 TGGEPLLQ 98 GGEPLL Sbjct: 78 GGGEPLLY 85 >gi|58696646|ref|ZP_00372200.1| glycosyl transferase, group 1 family protein [Wolbachia endosymbiont of Drosophila simulans] gi|225630352|ref|YP_002727143.1| glycosyl transferase, group 1 family protein / moaA/nifB/pqqE family protein [Wolbachia sp. wRi] gi|225630746|ref|YP_002727537.1| glycosyl transferase, group 1 / radical SAM family protein [Wolbachia sp. wRi] gi|58537170|gb|EAL60272.1| glycosyl transferase, group 1 family protein [Wolbachia endosymbiont of Drosophila simulans] gi|225592333|gb|ACN95352.1| glycosyl transferase, group 1 family protein / moaA/nifB/pqqE family protein [Wolbachia sp. wRi] gi|225592727|gb|ACN95746.1| glycosyl transferase, group 1 / radical SAM family protein [Wolbachia sp. wRi] Length = 778 Score = 42.3 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 26/140 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR------YNVDQLADLIEEQWITGEKEG 85 CN + C + + ++ K + +++ + +I+E G Sbjct: 453 CNFACVMCE---------CFSPYSKVKEEKKAKGIKPKIMSIETIRKVIKEAD--GTPLR 501 Query: 86 RYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144 T GEPL+ +I ++ G ++ + TNG+ W +L + Sbjct: 502 EIIPSTMGEPLMYKSFDEIINLCHEFGLKLNLTTNGSFPIKGARKW--------AELLVP 553 Query: 145 GGQELKLVFPQVNVSPENYI 164 ++K+ + I Sbjct: 554 ILSDVKISWNGATKETHERI 573 >gi|332041871|gb|EGI78220.1| molybdenum cofactor biosynthesis protein A [Hylemonella gracilis ATCC 19624] Length = 367 Score = 42.3 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 8/74 (10%) Query: 41 DRLSAQCRFCDTDFVGIQG----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 DR + +C +C V + G +++A L G ++ R LTGGEPL Sbjct: 37 DRCNFRCSYCMPKEVFTKDYPYLPHGDLLTFEEIARLARAFVSLGVRKIR---LTGGEPL 93 Query: 97 LQVDVP-LIQALNK 109 L+ ++ LI+ L Sbjct: 94 LRKNIEALIEQLAD 107 >gi|298369763|ref|ZP_06981080.1| molybdenum cofactor biosynthesis protein A [Neisseria sp. oral taxon 014 str. F0314] gi|298282320|gb|EFI23808.1| molybdenum cofactor biosynthesis protein A [Neisseria sp. oral taxon 014 str. F0314] Length = 324 Score = 42.3 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 37/177 (20%) Query: 41 DRLSAQCRFCDTDFVGIQGTKG-----GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 DR +C +C +G KG +++ A + G K R LTGGEP Sbjct: 19 DRCDLRCTYC-----LPKGFKGFAVPKDWLTIEETARVAAAFARLGTKRFR---LTGGEP 70 Query: 96 LLQV-DVPLIQAL-NKRGFE-IAVETNGT--------------IEPPQGIDWICVSPKAG 138 LL+ L + + G E I++ TNGT +D S + Sbjct: 71 LLRKGLTELAAEISRQPGVEDISLTTNGTRLGQQARALRAAGVRRLNISLD----SLRRD 126 Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 C I G L V + + E GF+ + ++ P+ G + + + +++C Q+ Sbjct: 127 CVASITGSDCLPQVLEGITAAKE--AGFERIKINMVPLKG-INDTDLDDMVAFCIQH 180 >gi|215424974|ref|ZP_03422893.1| putative transferase [Mycobacterium tuberculosis T92] gi|289748248|ref|ZP_06507626.1| hypothetical transferase [Mycobacterium tuberculosis T92] gi|289688835|gb|EFD56264.1| hypothetical transferase [Mycobacterium tuberculosis T92] Length = 543 Score = 42.3 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 18/112 (16%) Query: 27 CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQL 70 RF GC G D C C F G Sbjct: 77 LRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYAITAAQ 136 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRG-FEIAVETNG 120 + + + + E E + +GGEP + + + A R + + TNG Sbjct: 137 CERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVIINTNG 188 >gi|188996403|ref|YP_001930654.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931470|gb|ACD66100.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 375 Score = 42.3 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 18/90 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + S D+ D++ + + G ++ + + Sbjct: 33 CNLSCLHCYSKASV-----DSKDA---------LTTDEIVNTLPSLINAG---IKFIIFS 75 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 GGEPLL+ D+ + Q K+G + TNG Sbjct: 76 GGEPLLRKDIFEIAQECKKQGIITYLSTNG 105 >gi|269967125|ref|ZP_06181192.1| putative pyruvate formate-lyase 3 activating enzyme [Vibrio alginolyticus 40B] gi|269828262|gb|EEZ82529.1| putative pyruvate formate-lyase 3 activating enzyme [Vibrio alginolyticus 40B] Length = 313 Score = 42.3 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 G D L D + + ++ +GGEPL+Q D+ L Q L+ A+E+ Sbjct: 114 GEEAKSDMLFDTLMKDKPFYDQSQGGVTFSGGEPLMQADLVAELAQRLHDNQVSTAIESC 173 Query: 120 GTIEP 124 + Sbjct: 174 MNVPW 178 >gi|42520465|ref|NP_966380.1| glycosyl transferase, group 1 family protein / moaA/nifB/pqqE family protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410204|gb|AAS14314.1| glycosyl transferase, group 1 family protein / moaA/nifB/pqqE family protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 778 Score = 42.3 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 26/140 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR------YNVDQLADLIEEQWITGEKEG 85 CN + C + + ++ K + +++ + +I+E G Sbjct: 453 CNFACVMCE---------CFSPYSKVKEEKKAKGIKPKIMSIETIRKVIKEAD--GTPLR 501 Query: 86 RYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144 T GEPL+ +I ++ G ++ + TNG+ W +L + Sbjct: 502 EIIPSTMGEPLMYKSFDEIINLCHEFGLKLNLTTNGSFPIKGARKW--------AELLVP 553 Query: 145 GGQELKLVFPQVNVSPENYI 164 ++K+ + I Sbjct: 554 ILSDVKISWNGATKETHERI 573 >gi|134291935|ref|YP_001115704.1| pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia vietnamiensis G4] gi|134135124|gb|ABO59449.1| coenzyme PQQ biosynthesis protein E [Burkholderia vietnamiensis G4] Length = 384 Score = 42.3 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 9/91 (9%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 LW E R C FC + + T G + D +I + G + Sbjct: 23 PLWLLAELTYRCPLHCAFC---YNPVDFATHGAELDTDAWRTVISDARALGAAQ---IGF 76 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 +GGEPL + D+ L+ GF + T+G Sbjct: 77 SGGEPLQRDDLEELVGHARSLGFYTNLITSG 107 >gi|228994177|ref|ZP_04154077.1| Radical SAM domain protein [Bacillus pseudomycoides DSM 12442] gi|228765629|gb|EEM14283.1| Radical SAM domain protein [Bacillus pseudomycoides DSM 12442] Length = 259 Score = 42.3 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ + +++ + + GEPLL + L+ +++GF++ + TNGT+ Sbjct: 1 MEDFSKRLDQIKPHTDYIYLHVK---GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 54 >gi|219852935|ref|YP_002467367.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c] gi|219547194|gb|ACL17644.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c] Length = 512 Score = 42.3 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 6/90 (6%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 L + +R + C FC F + + D++ +++ +G Sbjct: 92 LANIDVTNRCNLNCDFC---FANARACGFIYEPDFDEIVGMMKNLRNERPVPPPAVQFSG 148 Query: 93 GEPLLQVDVP-LIQALNKRGF-EIAVETNG 120 GEP ++ D+P LI+ GF ++ + +NG Sbjct: 149 GEPTMRDDLPDLIREAKALGFSQVQIASNG 178 >gi|119719760|ref|YP_920255.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermofilum pendens Hrk 5] gi|119524880|gb|ABL78252.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermofilum pendens Hrk 5] Length = 265 Score = 42.3 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 15/105 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPL 103 +C +C + +G + R VD++ + + +TGGEP LQ L Sbjct: 38 RCPWC-ANSRLARGLEVRRATVDEIVSAVSRARAFVDYFH----VTGGEPTLQYRRLEKL 92 Query: 104 IQALNKR-GFEIAVETNGTIE-----PPQGIDW--ICVSPKAGCD 140 + + G ++++TN +I + +D + V KA D Sbjct: 93 FERVKTEVGLPLSLDTNASIPSALEHLLRSVDVEHVAVDVKAPLD 137 >gi|327398608|ref|YP_004339477.1| molybdenum cofactor biosynthesis protein A [Hippea maritima DSM 10411] gi|327181237|gb|AEA33418.1| molybdenum cofactor biosynthesis protein A [Hippea maritima DSM 10411] Length = 321 Score = 42.3 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 15/113 (13%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLT 91 N DR + +C +C + G + + ++ + E LT Sbjct: 13 NYLRISVTDRCNFRCIYC----MPKDGIGWKPMSEILTYEEISLFVKASAELGINKIKLT 68 Query: 92 GGEPLLQVDVP-LIQALNKR-GF-EIAVETNGTIEPP-------QGIDWICVS 134 GGEPL++ + L+ L G EI++ TNG++ G+D I +S Sbjct: 69 GGEPLVRKGIDRLVDMLKNIDGIDEISLTTNGSLLKKYAKGLKAAGLDRITIS 121 >gi|310821937|ref|YP_003954295.1| molybdenum cofactor biosynthesis protein moaa [Stigmatella aurantiaca DW4/3-1] gi|309395009|gb|ADO72468.1| Molybdenum cofactor biosynthesis protein MoaA [Stigmatella aurantiaca DW4/3-1] Length = 335 Score = 42.3 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 17/105 (16%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 GR + R S DR + +C +C + GG+ ++ + + Sbjct: 20 GRRMTYLRLS--------VTDRCNFRCTYC------SPASWGGKKDLLSALEFERIVSVF 65 Query: 81 GEKEGRYCVLTGGEPLLQVD-VPLIQALNKR-GFE-IAVETNGTI 122 + LTGGEPL++ D + + Q L+ G E +A+ TN + Sbjct: 66 ASMGIQRVRLTGGEPLIRPDILEIAQRLSALPGVERVAITTNASH 110 >gi|300774552|ref|ZP_07084415.1| MoaA/NifB/PqqE family protein [Chryseobacterium gleum ATCC 35910] gi|300506367|gb|EFK37502.1| MoaA/NifB/PqqE family protein [Chryseobacterium gleum ATCC 35910] Length = 467 Score = 42.3 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 12/82 (14%) Query: 31 GCNLWSGREQDRLSAQCR-----------FCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G D C C T + G +++++ + + + Sbjct: 80 GCPYDCGLCVDHEQHSCLSIVEVTDRCNLTCPTCYAMSSPHYGSHRSLEEIEAMFD-VIV 138 Query: 80 TGEKEGRYCVLTGGEPLLQVDV 101 E E ++GGEP + + Sbjct: 139 KNEGEPDVVQISGGEPTIHPEF 160 >gi|219559812|ref|ZP_03538888.1| putative transferase [Mycobacterium tuberculosis T17] Length = 535 Score = 42.3 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 18/112 (16%) Query: 27 CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQL 70 RF GC G D C C F G Sbjct: 77 LRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYAITAAQ 136 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRG-FEIAVETNG 120 + + + + E E + +GGEP + + + A R + + TNG Sbjct: 137 CERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVIINTNG 188 >gi|187735362|ref|YP_001877474.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Akkermansia muciniphila ATCC BAA-835] gi|187425414|gb|ACD04693.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Akkermansia muciniphila ATCC BAA-835] Length = 250 Score = 42.3 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 27/129 (20%) Query: 22 RVAVF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 +F R GCNL+ + + G G R + + Sbjct: 22 VACIFWLR--GCNLFCQYCYNVSLVR---------GTDSPAGDRTDYLDFL-----RDRV 65 Query: 81 GEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE------PPQGI-DWIC 132 G +G VL+GGE L D+ P+ + + + GF + ++TNGT +G+ D+I Sbjct: 66 GFLDG--VVLSGGECTLCPDLIPICRNIRQLGFAVKIDTNGTRPGVVKTLVEEGLCDYIA 123 Query: 133 VSPKAGCDL 141 + KA L Sbjct: 124 LDYKAPEKL 132 >gi|115374433|ref|ZP_01461715.1| radical SAM:Molybdenum cofactor synthesis C-terminal [Stigmatella aurantiaca DW4/3-1] gi|115368525|gb|EAU67478.1| radical SAM:Molybdenum cofactor synthesis C-terminal [Stigmatella aurantiaca DW4/3-1] Length = 362 Score = 42.3 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 17/105 (16%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 GR + R S DR + +C +C + GG+ ++ + + Sbjct: 24 GRRMTYLRLS--------VTDRCNFRCTYC------SPASWGGKKDLLSALEFERIVSVF 69 Query: 81 GEKEGRYCVLTGGEPLLQVD-VPLIQALNKR-GFE-IAVETNGTI 122 + LTGGEPL++ D + + Q L+ G E +A+ TN + Sbjct: 70 ASMGIQRVRLTGGEPLIRPDILEIAQRLSALPGVERVAITTNASH 114 >gi|123441007|ref|YP_001004996.1| putative pyruvate formate-lyase 3 activating enzyme [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087968|emb|CAL10756.1| putative pyruvate formate-lyase 3 activating enzyme [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 299 Score = 42.3 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G ++D + + + G L+GGEP +Q +V L+Q +++G AVE+ Sbjct: 101 GSPIDIDATMETLLRDLPFYRRSGGGVTLSGGEPFMQPEVAAELLQRCHQQGIHTAVES 159 >gi|15897297|ref|NP_341902.1| molybdenum cofactor biosynthesis protein A (moaA) [Sulfolobus solfataricus P2] gi|284174549|ref|ZP_06388518.1| molybdenum cofactor biosynthesis protein A (moaA) [Sulfolobus solfataricus 98/2] gi|24212003|sp|Q980F0|MOAA_SULSO RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|13813506|gb|AAK40692.1| Molybdenum cofactor biosynthesis protein A (moaA) [Sulfolobus solfataricus P2] gi|261601970|gb|ACX91573.1| molybdenum cofactor biosynthesis protein A [Sulfolobus solfataricus 98/2] Length = 308 Score = 42.3 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 8/77 (10%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104 +C FC ++G +G Y + D++ + + LTGGEP L+ D+ ++ Sbjct: 23 ECFFC-----HMEGEEGDNY-LLSKEDILLVAKVARKFGINSVKLTGGEPTLRRDLVEIV 76 Query: 105 QALNKRGFE-IAVETNG 120 + L + G+E +++ TNG Sbjct: 77 RGLKQLGYEDVSMTTNG 93 >gi|325849298|ref|ZP_08170715.1| radical SAM domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480160|gb|EGC83229.1| radical SAM domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 425 Score = 42.3 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 7/63 (11%) Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI-------EPPQGIDWI 131 + VLTGGEPL ++ I L +++ + TNG + + + ID+I Sbjct: 110 WLKSINFKRLVLTGGEPLKHPEILSILKLKDSRYKMILSTNGLLINKNNINDIAKNIDYI 169 Query: 132 CVS 134 +S Sbjct: 170 IIS 172 >gi|320115265|ref|YP_004185424.1| Radical SAM domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|319928356|gb|ADV79041.1| Radical SAM domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 327 Score = 42.3 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 11/76 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPL 103 C FC G Q R++ QL ++ + +TGGEPL+ + PL Sbjct: 15 NCNFC--QVGGPQRDINKRFDYKQLVRFLK-------GNNYHIQITGGEPLIRKKELAPL 65 Query: 104 IQALNKRGFEIAVETN 119 IQ L + G I + TN Sbjct: 66 IQDLKEDGHMITLLTN 81 >gi|312885478|ref|ZP_07745117.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603] gi|311302058|gb|EFQ79088.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603] Length = 465 Score = 42.3 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 14/103 (13%) Query: 31 GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G QD C C T + + G + ++ +++ + Sbjct: 80 GCPYDCGLCQDHEQHSCLTVIEVTDRCNLSCPTCYAMSSPSYGRHRTLHEIEQMLD-TIV 138 Query: 80 TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETNG 120 E + ++GGEP + ++ ++ + + TNG Sbjct: 139 ANEGKPDVVQISGGEPTVHPQFFEIMDIAKRKPIKHLMLNTNG 181 >gi|261822951|ref|YP_003261057.1| glycyl-radical enzyme activating protein family [Pectobacterium wasabiae WPP163] gi|261606964|gb|ACX89450.1| glycyl-radical enzyme activating protein family [Pectobacterium wasabiae WPP163] Length = 316 Score = 42.3 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 G V +L +I + + + G L+GGE LQ D V L+QA ++ AVET Sbjct: 114 GQDMTVAELMAVIMQDYSFYQSSGGGVTLSGGEVSLQTDFAVALLQACKQKMINTAVETQ 173 Query: 120 GT 121 GT Sbjct: 174 GT 175 >gi|261341169|ref|ZP_05969027.1| putative pyruvate formate-lyase 1 activating enzyme [Enterobacter cancerogenus ATCC 35316] gi|288316464|gb|EFC55402.1| putative pyruvate formate-lyase 1 activating enzyme [Enterobacter cancerogenus ATCC 35316] Length = 319 Score = 42.3 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 3/83 (3%) Query: 41 DRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR C C+ G +V+ + D + I + G L+GGE Q Sbjct: 95 DRSCTGCGLCEERCPAAALNVVGEPLSVETVFDRVMADEIWFRQSGGGVTLSGGEVATQP 154 Query: 100 DV--PLIQALNKRGFEIAVETNG 120 D LI L +ET G Sbjct: 155 DFAQALIARLKAEDIHTTIETAG 177 >gi|146337422|ref|YP_001202470.1| putative Fe-S oxidoreductases [Bradyrhizobium sp. ORS278] gi|146190228|emb|CAL74220.1| conserved hypothetical protein; putative predicted Fe-S oxidoreductases [Bradyrhizobium sp. ORS278] Length = 470 Score = 42.3 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 60/181 (33%), Gaps = 22/181 (12%) Query: 31 GCNLWSGREQDRLSAQCR-----------FCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G D C C F + ++ + + + + Sbjct: 85 GCPYDCGLCPDHEQHSCLALIEITDHCNLTCPVCFA-ESSPQRAHFSPLATVERMLDALV 143 Query: 80 TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKA 137 E E ++GGEP L + ++ A+ R + + TNG + + D++ Sbjct: 144 QSEGEPDLVQISGGEPTLHPEFFDILAAVRARPIRHVMINTNG-LRIAREPDFV------ 196 Query: 138 GCDLKIKGGQELKLVFPQVNVS-PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196 + K G E+ L F ++ + N G D R Q ++ + ++ + Sbjct: 197 SRLAETKRGLEVYLQFDSLSRAGLTNIRGADLRRIRQQALENLERAGISTTLVATIKRGV 256 Query: 197 K 197 Sbjct: 257 N 257 >gi|167036843|ref|YP_001664421.1| radical SAM domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|166855677|gb|ABY94085.1| Radical SAM domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] Length = 338 Score = 42.3 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 11/76 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPL 103 C FC G Q R++ QL ++ + +TGGEPL+ + PL Sbjct: 26 NCNFC--QVGGPQRDINKRFDYKQLVRFLK-------GNNYHIQITGGEPLIRKKELAPL 76 Query: 104 IQALNKRGFEIAVETN 119 IQ L + G I + TN Sbjct: 77 IQDLKEDGHMITLLTN 92 >gi|114331563|ref|YP_747785.1| radical SAM domain-containing protein [Nitrosomonas eutropha C91] gi|114308577|gb|ABI59820.1| Radical SAM domain protein [Nitrosomonas eutropha C91] Length = 387 Score = 42.3 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C + T R +VD+ ++E + Sbjct: 38 CNLAC--------AGCG----KIDYPEETLRRRLSVDECLHAVDECG------APVVSIA 79 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ ++P ++Q + +R + + TN + +D SP + + G +E Sbjct: 80 GGEPLIHKEMPQIVQGIIQRKKFVYLCTN-ALLLDARMDDYQPSPYLTFSIHLDGNRE 136 >gi|325968647|ref|YP_004244839.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28] gi|323707850|gb|ADY01337.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28] Length = 503 Score = 42.3 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 18/91 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C + +D+ +++E G L+ Sbjct: 146 CNL-----------RCIHC---YQNAGRPLPNELTLDEKLRVVKELDEAGVPA---IALS 188 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 GGEP + D P++ + RGF A+ TNGT Sbjct: 189 GGEPTVHRDFWPVLAEIGGRGFYPAIATNGT 219 >gi|221194628|ref|ZP_03567685.1| pyruvate formate-lyase 1-activating enzyme [Atopobium rimae ATCC 49626] gi|221185532|gb|EEE17922.1| pyruvate formate-lyase 1-activating enzyme [Atopobium rimae ATCC 49626] Length = 273 Score = 42.3 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 39/106 (36%), Gaps = 27/106 (25%) Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64 E F T+ G G R+ VF GC + +C +C DT + G Sbjct: 31 ETFGTVDGPGT---RLVVFM--QGCPM-----------RCAYCHNPDT----WKFGIGHE 70 Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110 +V + L + K G TGGEPL Q + AL + Sbjct: 71 KSVADVLALYDRNRPFYRKGG--ITATGGEPLAQP--AFVGALFEA 112 >gi|110667956|ref|YP_657767.1| molybdopterin-based tungsten cofactor biosynthesis protein [Haloquadratum walsbyi DSM 16790] gi|109625703|emb|CAJ52135.1| molybdopterin-based tungsten cofactor biosynthesis protein [Haloquadratum walsbyi DSM 16790] Length = 572 Score = 42.3 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 58/165 (35%), Gaps = 39/165 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC F G G + + + L+ Q I R + Sbjct: 183 CNL-----------SCSFC---FASS-GPGGTHRSFETVEKLL--QTIVKSGGPRPIQFS 225 Query: 92 GGEPLLQVDVP-LIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEP ++ D+P +++ + GFE I + TNG IE + K G ++ Sbjct: 226 GGEPTIRDDLPEIVERAGQMGFEHIQINTNG-IELVE---------KKGYASRLSDAGVT 275 Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 + + E Y + G L + A+ C + Sbjct: 276 AIYLQFDGLQSETYEA----------IRGVDLADLKREAVKTCRE 310 >gi|313496741|gb|ADR58107.1| Coenzyme PQQ synthesis protein E [Pseudomonas putida BIRD-1] Length = 386 Score = 42.3 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C +G + +Q ++ E G + + Sbjct: 20 PLWLLAELTYRCPLQCPYCSNPLDF--AAQGQELSTEQWFKVMAEAREMGAAQ---IGFS 74 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI + G+ + T+G Sbjct: 75 GGEPLVRQDLAELIGEARRLGYYTNLITSG 104 >gi|295096397|emb|CBK85487.1| pyruvate formate-lyase 1-activating enzyme [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 246 Score = 42.3 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A +K G ++TNG Sbjct: 72 GGVTASGGEAILQAEFVRDWFRACHKEGIHTCLDTNG 108 >gi|296103095|ref|YP_003613241.1| pyruvate formate lyase-activating enzyme 1 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057554|gb|ADF62292.1| pyruvate formate lyase-activating enzyme 1 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 246 Score = 42.3 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A +K G ++TNG Sbjct: 72 GGVTASGGEAILQAEFVRDWFRACHKEGIHTCLDTNG 108 >gi|228909375|ref|ZP_04073200.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis IBL 200] gi|228850152|gb|EEM94981.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis IBL 200] Length = 307 Score = 42.3 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 13/85 (15%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ D+P LI+ L+K G E I + Sbjct: 14 SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRDLPQLIERLHKIDGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVS 134 TNG++ D + VS Sbjct: 71 TTNGSLLKKFAPDLYKAGLSRVTVS 95 >gi|170761459|ref|YP_001786460.1| radical SAM domain-containing protein [Clostridium botulinum A3 str. Loch Maree] gi|169408448|gb|ACA56859.1| radical SAM domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 297 Score = 42.3 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 20/92 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC K +++ ++++ + + Sbjct: 20 CNL-----------ACDFC-----PETRRKPQFMSIEFFDKILDQIKPYTDYIYFHVK-- 61 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL D+ + K+GF++ + TNGT+ Sbjct: 62 -GEPLLHPDIDKFLDLSYKKGFKVNITTNGTL 92 >gi|168184784|ref|ZP_02619448.1| radical SAM domain protein [Clostridium botulinum Bf] gi|229587302|ref|YP_002860340.1| putative radical SAM domain protein [Clostridium botulinum Ba4 str. 657] gi|182672199|gb|EDT84160.1| radical SAM domain protein [Clostridium botulinum Bf] gi|229260272|gb|ACQ51309.1| putative radical SAM domain protein [Clostridium botulinum Ba4 str. 657] Length = 353 Score = 42.3 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 20/91 (21%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL C D + D++ + + G K+ V+ Sbjct: 17 GCNLNCIHC-------CNVSDEKRTFLD--------ADEILKFHSKLYKLGIKDS---VV 58 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 TGGEP L D +I+ L K G ++ V +NG Sbjct: 59 TGGEPTLHKDFEKIIEGLCKVG-KVVVTSNG 88 >gi|315646290|ref|ZP_07899410.1| pyruvate formate-lyase activating enzyme [Paenibacillus vortex V453] gi|315278489|gb|EFU41805.1| pyruvate formate-lyase activating enzyme [Paenibacillus vortex V453] Length = 242 Score = 42.3 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 51/154 (33%), Gaps = 44/154 (28%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F T+ G G RF GC +C++C DT Sbjct: 10 ETFGTVDGPG---------IRFVLFMQGC-----------LLKCQYCHNPDT----WGLH 45 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-----GFEIA 115 +G V+ + IE G ++GGEP LQ P + L K Sbjct: 46 EGQEMTVEDVLAQIEPYLSYYRSSGGGLTVSGGEPTLQ--YPFVTELFKEVKRRWNLHTT 103 Query: 116 VETNGTIEPP------QGIDWICVSPKAGCDLKI 143 +++NG EP + D + + K D K Sbjct: 104 LDSNGYNEPEKISELLEHTDLVLLDLKHINDEKH 137 >gi|283784729|ref|YP_003364594.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter rodentium ICC168] gi|282948183|emb|CBG87750.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter rodentium ICC168] Length = 246 Score = 42.3 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V++L + G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKEVVTYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 72 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 108 >gi|254385929|ref|ZP_05001247.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194344792|gb|EDX25758.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 343 Score = 42.3 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 38 CNLAC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + +++ L + + + TN + + I+ SP + I G +E Sbjct: 80 GGEPLMHPQIDEIVRQLVAKRKYVFLCTN-AMLLRKKIEKFTPSPYFAFAVHIDGLRE 136 >gi|111220890|ref|YP_711684.1| hypothetical protein FRAAL1435 [Frankia alni ACN14a] gi|111148422|emb|CAJ60093.1| conserved hypothetical protein; putative Radical SAM domain [Frankia alni ACN14a] Length = 334 Score = 42.3 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C R + + ++E + Sbjct: 38 CNL-----------SCTGCG-KIQHPASVLKQRMSPEDALAAVKECG------APVVAIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + ++ L KR + + TNG + + + SP L I G +E Sbjct: 80 GGEPLMHPQIHEIVNELVKRKKFVILCTNG-LLLQKKLKNFTPSPYFTFVLHIDGLRE 136 >gi|91203835|emb|CAJ71488.1| similar to moaA/nifB/ppqE/nirJ protein family for cofactor bionsynthesis [Candidatus Kuenenia stuttgartiensis] Length = 340 Score = 42.3 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 19/117 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C+ C F + + D+ + +E TG C Sbjct: 64 CNL-----------RCKHC--YFYAHDYAEKPELSDDEWIEKLEGLKETG-FPFYQCSWI 109 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGID---WICVSPKAGCDLKIKG 145 GGEPLL+ D L++ K + TNGT+E P D +I V K I+G Sbjct: 110 GGEPLLRKD--LLERCMKYFRSNLIVTNGTLELPNWPDVNFYISVDGKKETHDAIRG 164 >gi|52424458|ref|YP_087595.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia succiniciproducens MBEL55E] gi|52306510|gb|AAU37010.1| PflA protein [Mannheimia succiniciproducens MBEL55E] Length = 246 Score = 42.3 bits (99), Expect = 0.048, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G +V++L + Sbjct: 21 IRFILFLQGC-----------LMRCKYCHNRDT----WDLHGGKEISVEELMKEVVTYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A +K G ++TNG Sbjct: 66 FMNASGGGVTASGGEAILQAEFVRDWFRACHKEGINTCLDTNG 108 >gi|78223014|ref|YP_384761.1| radical SAM family protein [Geobacter metallireducens GS-15] gi|78194269|gb|ABB32036.1| Radical SAM [Geobacter metallireducens GS-15] Length = 465 Score = 42.3 bits (99), Expect = 0.048, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 36/104 (34%), Gaps = 15/104 (14%) Query: 30 SGCNLWSGREQDRLSAQCRF-------CDTDFVGIQGTKGGRYNVDQLADLI----EEQW 78 GC G C C+ G + +VD D I E Sbjct: 75 QGCPFDCGLCSAHAQMPCSVLLEVTDRCNLQCAVCFADSGRKDSVDTSLDRITWLLERAM 134 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120 L+GGEP L+ D+P ++ A + GF I + TNG Sbjct: 135 AAAGPCNLQ--LSGGEPTLRDDLPEIVAAARRIGFSFIQLNTNG 176 >gi|205829861|sp|A9BMV6|RLMN_DELAS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 374 Score = 41.9 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 60/192 (31%), Gaps = 39/192 (20%) Query: 24 AVFC----RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI----- 74 AVF R G Q + CRFC T G QG + LA L Sbjct: 92 AVFIPEDDR--G--TLCVSSQAGCAVGCRFCST---GHQGFSRNLSTGEILAQLWYAEHS 144 Query: 75 --EEQWITGEKEGRYCVLTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTI 122 + GE+ V+ G GEPL Q L+ AL G+ + V T+G + Sbjct: 145 LRKRLGTGGERVISNVVMMGMGEPL-QNYTALVPALRAMLDDHGYGLSRRRVTVSTSGVV 203 Query: 123 EPPQGIDWICVSPKAGCDLKIKG-GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + C + + EL+ +N + D L+ F Sbjct: 204 PMIDRLSQDCA---VAMAVSLHAPNDELRDPLVPLNRKYPIHELLDACERYLEFAPRDF- 259 Query: 182 EENTNLAISYCF 193 + YC Sbjct: 260 -----ITFEYCM 266 >gi|253698670|ref|YP_003019859.1| radical SAM protein [Geobacter sp. M21] gi|251773520|gb|ACT16101.1| Radical SAM domain protein [Geobacter sp. M21] Length = 358 Score = 41.9 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 17/95 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL CR C ++ +G ++ ++ L++E + Sbjct: 15 TQRCNLKC--------VHCR-CSSELTSSEGD----FSTEEGKKLLKE---ISDFSKPVV 58 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 VL+GGEPL++ D+ L + G + + +NG++ Sbjct: 59 VLSGGEPLMRPDIFELAEYGTSLGLRMCMASNGSL 93 >gi|160900454|ref|YP_001566036.1| radical SAM protein [Delftia acidovorans SPH-1] gi|160366038|gb|ABX37651.1| radical SAM enzyme, Cfr family [Delftia acidovorans SPH-1] Length = 397 Score = 41.9 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 60/192 (31%), Gaps = 39/192 (20%) Query: 24 AVFC----RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI----- 74 AVF R G Q + CRFC T G QG + LA L Sbjct: 115 AVFIPEDDR--G--TLCVSSQAGCAVGCRFCST---GHQGFSRNLSTGEILAQLWYAEHS 167 Query: 75 --EEQWITGEKEGRYCVLTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTI 122 + GE+ V+ G GEPL Q L+ AL G+ + V T+G + Sbjct: 168 LRKRLGTGGERVISNVVMMGMGEPL-QNYTALVPALRAMLDDHGYGLSRRRVTVSTSGVV 226 Query: 123 EPPQGIDWICVSPKAGCDLKIKG-GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181 + C + + EL+ +N + D L+ F Sbjct: 227 PMIDRLSQDCA---VAMAVSLHAPNDELRDPLVPLNRKYPIHELLDACERYLEFAPRDF- 282 Query: 182 EENTNLAISYCF 193 + YC Sbjct: 283 -----ITFEYCM 289 >gi|88602977|ref|YP_503155.1| radical SAM family protein [Methanospirillum hungatei JF-1] gi|88188439|gb|ABD41436.1| Radical SAM [Methanospirillum hungatei JF-1] Length = 222 Score = 41.9 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 46/133 (34%), Gaps = 29/133 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF R GC + +C +C T R V+++ +LI + Sbjct: 2 VFFR--GCPV-----------KCWYC---HNQSILTGEDRRPVEEVKELIRSSALLISG- 44 Query: 85 GRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSP 135 + +GGE +Q L + G + TNG + ID I + Sbjct: 45 ---VIFSGGEATMQPPALFALARYSRSIGLSTGLHTNGVYPDVIRKLIDERLIDHIALDI 101 Query: 136 KAGCDLKIKGGQE 148 KA +L G+E Sbjct: 102 KAEWNLYTVRGKE 114 >gi|283477062|emb|CAY72955.1| Coenzyme PQQ synthesis protein E [Erwinia pyrifoliae DSM 12163] Length = 382 Score = 41.9 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF + Q D+ ++ G + Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFAQQEKE----LTTAQWIDVFKQARAMGAVQ---IG 63 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL++ D+P LI++ GF + T+G Sbjct: 64 FSGGEPLVRKDLPELIRSARDLGFYTNLITSG 95 >gi|317499337|ref|ZP_07957607.1| glycyl-radical enzyme activating protein family [Lachnospiraceae bacterium 5_1_63FAA] gi|316893372|gb|EFV15584.1| glycyl-radical enzyme activating protein family [Lachnospiraceae bacterium 5_1_63FAA] Length = 264 Score = 41.9 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 24/106 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG---------TKGGRYNVDQLADLIE 75 VF GC L +C++C T + T G V+ + + Sbjct: 33 VF--LKGCPL-----------RCKWCSTPESYQKKIQTTLDGTITYGQIMTVEDVMVEVR 79 Query: 76 EQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119 + + G L+GGE L Q + +++ G A+E++ Sbjct: 80 KDSLFYFHSGGGVTLSGGEILAQPEFAYYILRRSCYEGINTAIESS 125 >gi|310765258|gb|ADP10208.1| Coenzyme PQQ synthesis protein E [Erwinia sp. Ejp617] Length = 382 Score = 41.9 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF + Q D+ ++ G + Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFAQQEKE----LTTAQWIDVFKQARAMGAVQ---IG 63 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL++ D+P LI++ GF + T+G Sbjct: 64 FSGGEPLVRKDLPELIRSARDLGFYTNLITSG 95 >gi|256829065|ref|YP_003157793.1| Radical SAM domain protein [Desulfomicrobium baculatum DSM 4028] gi|256578241|gb|ACU89377.1| Radical SAM domain protein [Desulfomicrobium baculatum DSM 4028] Length = 244 Score = 41.9 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 10/92 (10%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 R R + +C FC + ++ + +Q I K +TGGEP Sbjct: 9 CYRITRRCNWKCHFC---QAPPDAKELSTVEHLKILRRLAQQRILSLK------ITGGEP 59 Query: 96 LLQVDVP-LIQALNKRGFEIAVETNGTIEPPQ 126 LL+ D+ I + GF I + +NG++ P Sbjct: 60 LLRNDLEAFIDESSGLGFNITLCSNGSMFRPS 91 >gi|313126022|ref|YP_004036292.1| GTP cyclohydrolase subunit moaa [Halogeometricum borinquense DSM 11551] gi|312292387|gb|ADQ66847.1| GTP cyclohydrolase subunit MoaA [Halogeometricum borinquense DSM 11551] Length = 319 Score = 41.9 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 62/183 (33%), Gaps = 35/183 (19%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + C +C DT G + D + +E + E TGGE Sbjct: 19 DRCNFDCVYCHNEGLGDTR--GPMEPSDDEMSTDDVVRFLE---VVEEFGVEKVKFTGGE 73 Query: 95 PLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDW-------ICVS-----PKAGCDLK 142 P+L+ D+ I E ++ TNGT P + D + VS P+A ++ Sbjct: 74 PMLRQDLAEIIRRTPESMESSLTTNGTFLPGRAEDLKEAGLSRVNVSQDALDPEAFAEIT 133 Query: 143 IKGGQELKLVFPQVNVSPE---NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199 G V V + + + + + F + + +NP + Sbjct: 134 KSGAY--DNVLEGVQAALDAGLDPVKLNMVVF-------EHTAGYVEEMVDHVAENPGLQ 184 Query: 200 LSV 202 L + Sbjct: 185 LQL 187 >gi|224823976|ref|ZP_03697084.1| Radical SAM domain protein [Lutiella nitroferrum 2002] gi|224603395|gb|EEG09570.1| Radical SAM domain protein [Lutiella nitroferrum 2002] Length = 476 Score = 41.9 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 50/137 (36%), Gaps = 45/137 (32%) Query: 30 SGCNLWSGREQDRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +GCNL C +C DT + G R +V+ +E E Sbjct: 110 TGCNL-----------SCSYCYKEDLDTP------SAGRRMDVETAKASVEMLLQESPDE 152 Query: 85 GRY-CVLTGGEPLLQVDVPLIQ--------ALNKRGFEIA--VETNGTIEPPQGIDW--- 130 RY V GGEPL + LI+ + G ++ + TN T+ + +D+ Sbjct: 153 PRYTVVFFGGEPL--SNRKLIETMVDYCETRFAELGKQVEFVMTTNATLLTEEIVDYLNA 210 Query: 131 ----ICVS---PKAGCD 140 + VS PK D Sbjct: 211 HRFGLSVSIDGPKKIHD 227 >gi|89899184|ref|YP_521655.1| ribonucleoside-triphosphate reductase, anaerobic-like protein [Rhodoferax ferrireducens T118] gi|89343921|gb|ABD68124.1| Ribonucleoside-triphosphate reductase, anaerobic-like [Rhodoferax ferrireducens T118] Length = 238 Score = 41.9 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 26/126 (20%) Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G++A VF GC +C +C + + T + + L++ + Sbjct: 25 GKLAAVVFV--QGCP-----------WRCGYCHNPHLQPR-TGSSLVSWSAVLALLKRRV 70 Query: 79 ITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 + V +GGEP + + ++A+ GF + + + G + +DW+ Sbjct: 71 GLIDA----VVFSGGEPTMDPGLLDAMRAVRSLGFGVGLHSAGMYPRRLAEVLELVDWVG 126 Query: 133 VSPKAG 138 + K+ Sbjct: 127 LDVKSS 132 >gi|255525977|ref|ZP_05392902.1| glycyl-radical enzyme activating protein family [Clostridium carboxidivorans P7] gi|255510317|gb|EET86632.1| glycyl-radical enzyme activating protein family [Clostridium carboxidivorans P7] Length = 301 Score = 41.9 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI 122 Y+ +++ +IE+Q I G +GGE +QV L L ++A+ET+G Sbjct: 106 YSSEEILKIIEKQKIFYRHSGGGVTFSGGEATMQVGILRELAYKLYDSAVDLAIETSGYF 165 Query: 123 EPPQGIDWI 131 E + D + Sbjct: 166 EFEEVKDIL 174 >gi|207092753|ref|ZP_03240540.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori HPKX_438_AG0C1] Length = 293 Score = 41.9 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 25/154 (16%) Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIA--VETN 119 +D + + ++ G K+ R +TGGEPLL+ I L+ E+A + TN Sbjct: 13 ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDEFIAKLHAYNKEVALVLSTN 69 Query: 120 GTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169 G + D + V S K+ LKI LK + S + + Sbjct: 70 GFLLKKMAKDLKNAGLSRVNVSLDSLKSDRILKISQKDALKNTLEGIEESLKVGLKLKLN 129 Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQ 203 + +E L + Y S+Q Sbjct: 130 TVV---IKSVNDDEILEL-LEYAKNR-----SIQ 154 >gi|197116415|ref|YP_002136842.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase [Geobacter bemidjiensis Bem] gi|197085775|gb|ACH37046.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase [Geobacter bemidjiensis Bem] Length = 358 Score = 41.9 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 17/95 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL CR C ++ +G ++ ++ L++E + Sbjct: 15 TQRCNLKC--------VHCR-CSSELTSSEGD----FSTEEGKKLLKE---ISDFSKPVV 58 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 VL+GGEPL++ D+ L + G + + +NG++ Sbjct: 59 VLSGGEPLMRPDIFELAEYGTSLGLRMCMASNGSL 93 >gi|126179411|ref|YP_001047376.1| putative molybdenum cofactor biosynthesis protein A [Methanoculleus marisnigri JR1] gi|125862205|gb|ABN57394.1| GTP cyclohydrolase subunit MoaA [Methanoculleus marisnigri JR1] Length = 292 Score = 41.9 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 21/92 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + + + +A+L+ + + R T Sbjct: 22 CNL-----------RCIYC---HAEGEVNPEEQMSAGDIAELM---RVGVQFGIRSIKFT 64 Query: 92 GGEPLLQVDVPLIQALNK--RGFEIAVETNGT 121 GGEPLL+ D L+ + G E ++ TNGT Sbjct: 65 GGEPLLRRD--LVDIIRSVPPGVESSLTTNGT 94 >gi|91773244|ref|YP_565936.1| radical SAM family Fe-S protein [Methanococcoides burtonii DSM 6242] gi|91712259|gb|ABE52186.1| Fe-S protein, radical SAM family [Methanococcoides burtonii DSM 6242] Length = 231 Score = 41.9 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 25/97 (25%) Query: 27 CR--FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 R F GCN+ +C +C +V+++ DL + Sbjct: 13 IRIEFFGCNM-----------KCPYC-----VHIHQPFKEVSVEEVVDLAKNSLSKAVHL 56 Query: 85 GRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNG 120 G G EP LQ +PLI+ALN+ G E+ +++NG Sbjct: 57 G------GAEPTLQKELIPLIKALNEVGKEVLLKSNG 87 >gi|325523142|gb|EGD01540.1| pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia sp. TJI49] Length = 372 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 9/91 (9%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 LW E R C FC + + G + D +I + G + Sbjct: 11 PLWLLAELTYRCPLHCAFC---YNPVDFAKHGAELDTDAWRTVISDARALGAAQ---IGF 64 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL + D+ L++ GF + T+G Sbjct: 65 SGGEPLQRDDLETLVEHARGLGFYTNLITSG 95 >gi|317491449|ref|ZP_07949885.1| pyruvate formate-lyase 1-activating enzyme [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920996|gb|EFV42319.1| pyruvate formate-lyase 1-activating enzyme [Enterobacteriaceae bacterium 9_2_54FAA] Length = 246 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 54/177 (30%), Gaps = 36/177 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGTEITVEDLMKDVVTYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKAGCDL 141 +GGE +LQ + +A + G ++TNG ID + V+ DL Sbjct: 72 GGVTASGGEAILQAEFVRDWFRACKEEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDL 131 Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198 K Q V N+ +F R+ + N I Y P W Sbjct: 132 KQMNDD-----IHQNLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV-PGW 174 >gi|293396829|ref|ZP_06641103.1| pyruvate formate-lyase 1-activating enzyme [Serratia odorifera DSM 4582] gi|291420300|gb|EFE93555.1| pyruvate formate-lyase 1-activating enzyme [Serratia odorifera DSM 4582] Length = 246 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G V++L Sbjct: 25 VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKDTVSYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A ++ G ++TNG Sbjct: 68 NASGGGVTASGGEAILQAEFVRDWFRACHQEGINTCLDTNG 108 >gi|289548181|ref|YP_003473169.1| molybdenum cofactor biosynthesis protein A [Thermocrinis albus DSM 14484] gi|289181798|gb|ADC89042.1| molybdenum cofactor biosynthesis protein A [Thermocrinis albus DSM 14484] Length = 332 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 16/105 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLL 97 DR + +C FC G + + +++ ++ ++ R +TGGEPLL Sbjct: 19 DRCNFRCSFC-----MPDGHQYEFFPKEEILTFEEITRVVKVSKSLGVRKVRITGGEPLL 73 Query: 98 QVDVP-LIQALNKRGFEIAVETNG-------TIEPPQGIDWICVS 134 + D+ LI ++ ++++ TNG + G+ + VS Sbjct: 74 RRDIEKLISMISPFVEDVSLTTNGFLLKEKASSLKEAGLKRVTVS 118 >gi|228916198|ref|ZP_04079768.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843396|gb|EEM88474.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 338 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D + + + + D++ + G ++ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGPD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ LNK G E I + TNG++ D + VS Sbjct: 75 GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126 >gi|196038233|ref|ZP_03105542.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus NVH0597-99] gi|196030641|gb|EDX69239.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus NVH0597-99] Length = 338 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D + + + + D++ + G ++ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGPD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ LNK G E I + TNG++ D + VS Sbjct: 75 GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126 >gi|196034109|ref|ZP_03101519.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus W] gi|195993183|gb|EDX57141.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus W] Length = 338 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D + + + + D++ + G ++ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGPD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ LNK G E I + TNG++ D + VS Sbjct: 75 GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126 >gi|218904693|ref|YP_002452527.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH820] gi|228928618|ref|ZP_04091654.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|218538124|gb|ACK90522.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH820] gi|228830937|gb|EEM76538.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 338 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D + + + + D++ + G ++ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGPD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ LNK G E I + TNG++ D + VS Sbjct: 75 GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126 >gi|124027153|ref|YP_001012473.1| Fe-S osidoreductase [Hyperthermus butylicus DSM 5456] gi|123977847|gb|ABM80128.1| predicted Fe-S osidoreductase [Hyperthermus butylicus DSM 5456] Length = 345 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 L + + E + LTGGEPL+ P L + + G V TN T+ Sbjct: 48 SLEEKLRLVREIAELGVEHVGLTGGEPLIHPHFPRLAREIVDHGMTYHVVTNATM 102 >gi|118478814|ref|YP_895965.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis str. Al Hakam] gi|196044540|ref|ZP_03111775.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus 03BB108] gi|225865551|ref|YP_002750929.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus 03BB102] gi|118418039|gb|ABK86458.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis str. Al Hakam] gi|196024575|gb|EDX63247.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus 03BB108] gi|225786709|gb|ACO26926.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus 03BB102] Length = 338 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D + + + + D++ + G ++ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGPD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ LNK G E I + TNG++ D + VS Sbjct: 75 GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126 >gi|104779672|ref|YP_606170.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas entomophila L48] gi|95108659|emb|CAK13353.1| coenzyme PQQ synthesis protein E (Coenzyme PQQ synthesis protein III) [Pseudomonas entomophila L48] Length = 372 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C +G + Q ++ E G + + Sbjct: 6 PLWLLAELTYRCPLQCPYCSNPLDF--AEQGKELSTAQWFKVMAEAREMGAAQ---IGFS 60 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI + G+ + T+G Sbjct: 61 GGEPLVRQDLAELIGEARRLGYYTNLITSG 90 >gi|49478276|ref|YP_037649.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329832|gb|AAT60478.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 338 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D + + + + D++ + G ++ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGPD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ LNK G E I + TNG++ D + VS Sbjct: 75 GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126 >gi|52141964|ref|YP_084863.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus E33L] gi|51975433|gb|AAU16983.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus E33L] Length = 338 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D + + + + D++ + G ++ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGPD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ LNK G E I + TNG++ D + VS Sbjct: 75 GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126 >gi|311899066|dbj|BAJ31474.1| putative molybdenum cofactor biosynthesis protein A [Kitasatospora setae KM-6054] Length = 346 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 28/128 (21%) Query: 21 GRVAVFCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77 GR AV R S CNL +C +C + K +++ L+ Sbjct: 24 GRRAVDLRVSLTDRCNL-----------RCTYCMPEEGLSWLGKPELLTDEEIVRLVA-- 70 Query: 78 WITGEKEGRYCVLTGGEPLLQVDV----PLIQALNKRGFEIAVETNG---TIEPP----Q 126 G R TGGEPLL+ + AL R E+++ TNG P Sbjct: 71 LAVGTLGVREVRFTGGEPLLRPGLVGIIAACAALEPRP-EVSLTTNGIGLARIAPALRDA 129 Query: 127 GIDWICVS 134 G+D + VS Sbjct: 130 GVDRVNVS 137 >gi|269792527|ref|YP_003317431.1| Radical SAM domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100162|gb|ACZ19149.1| Radical SAM domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 324 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 26/120 (21%) Query: 31 GCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEG 85 GCNL +C FC V G + +Q+ADL E + Sbjct: 73 GCNL-----------RCPFCQNHPISQVQGGCFPGELTLLSPEQVADLAESNGL------ 115 Query: 86 RYCVLTGGEPLLQVDVPLIQA---LNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 R T EPL+ ++ L++A L RG + + TNGT+ P + + + A D+K Sbjct: 116 RAVAFTYNEPLIHMEY-LLEASRVLKARGLGVVLVTNGTVSPDPLAELMGLVDAANVDVK 174 >gi|226951887|ref|ZP_03822351.1| coenzyme PQQ synthesis protein E (coenzyme PQQ synthesis protein III) [Acinetobacter sp. ATCC 27244] gi|294649144|ref|ZP_06726585.1| coenzyme PQQ synthesis protein E (pyrroloquinoline quinone biosynthesis protein E) [Acinetobacter haemolyticus ATCC 19194] gi|226837427|gb|EEH69810.1| coenzyme PQQ synthesis protein E (coenzyme PQQ synthesis protein III) [Acinetobacter sp. ATCC 27244] gi|292824942|gb|EFF83704.1| coenzyme PQQ synthesis protein E (pyrroloquinoline quinone biosynthesis protein E) [Acinetobacter haemolyticus ATCC 19194] Length = 384 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 20/174 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C D+ + + +++++ G + + Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFEVLDQARQMGAVQLGF-- 61 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140 +GGEPL+ Q L+ ++ GF + T+G + G+D I +S +A Sbjct: 62 -SGGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTQQRISHLKHVGLDHIQISFQASDP 120 Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 + K F Q + +D+ L + + + I C + Sbjct: 121 VVNDALAGSKHAFEQKYEMCQLVKKYDYP-MVLNFVIHRHNIDQIDKIIELCLE 173 >gi|330431399|gb|AEC16458.1| pyruvate formate lyase-activating enzyme 1 [Gallibacterium anatis UMN179] Length = 246 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G V++L + Sbjct: 21 IRFILFTQGC-----------LMRCKYCHNRDT----WDLHSGKEITVEELMKEVVTYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A K G ++TNG Sbjct: 66 FMNASGGGVTASGGEAILQPEFIRDWFRACKKEGIHTCLDTNG 108 >gi|327393327|dbj|BAK10749.1| pyruvate formate-lyase 1- activating enzyme PflA [Pantoea ananatis AJ13355] Length = 290 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 48/159 (30%), Gaps = 40/159 (25%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 71 FQGC-----------LMRCLYCHNRDT----WDTHAGKEITVEALMADVLSYRHFMNASG 115 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI--------EPPQGIDWICVSP 135 +GGE +LQ + +A G ++TNG + E D + + Sbjct: 116 GGVTASGGEAILQAEFVRDWFRACKAEGIHTCLDTNGFVRRYDPVIDELLDATDLVMLDL 175 Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174 K D Q+ V N+ DF R LQ Sbjct: 176 KQMNDE-----------VHQILVGVSNHRTLDFAR-YLQ 202 >gi|325849304|ref|ZP_08170721.1| radical SAM domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480166|gb|EGC83235.1| radical SAM domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 412 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 23/97 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CRFC + N L D+ + R ++T Sbjct: 74 CNL-----------NCRFC----SMRSNLLERKVNSINLLDMDTIIGSIEKINPRKIIIT 118 Query: 92 GGEPLLQVDVPLIQALNKRGF------EIAVETNGTI 122 GGEP + L+ L F +I ++TNGT+ Sbjct: 119 GGEPT--KNSDLLDILKLIKFNNNISSKIYLQTNGTL 153 >gi|291616899|ref|YP_003519641.1| PflA [Pantoea ananatis LMG 20103] gi|291151929|gb|ADD76513.1| PflA [Pantoea ananatis LMG 20103] Length = 290 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 48/159 (30%), Gaps = 40/159 (25%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 71 FQGC-----------LMRCLYCHNRDT----WDTHAGKEITVEALMADVLSYRHFMNASG 115 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI--------EPPQGIDWICVSP 135 +GGE +LQ + +A G ++TNG + E D + + Sbjct: 116 GGVTASGGEAILQAEFVRDWFRACKAEGIHTCLDTNGFVRRYDPVIDELLDATDLVMLDL 175 Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174 K D Q+ V N+ DF R LQ Sbjct: 176 KQMNDE-----------VHQILVGVSNHRTLDFAR-YLQ 202 >gi|322434009|ref|YP_004216221.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9] gi|321161736|gb|ADW67441.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9] Length = 352 Score = 41.9 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 23/117 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C + ++ ++ G ++ Sbjct: 54 CNL-----------ACTYC--------NEFDQTSDPVEIVEMERRIDELGRLGTAVITIS 94 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147 GGEPLL ++ +I + K G + TNG + P I+ + KAG D Sbjct: 95 GGEPLLHPELDRIIARIRKTGAIAGMITNGYLLMPDRIERLN---KAGLDHMQISID 148 >gi|157144549|ref|YP_001451868.1| ribosomal RNA large subunit methyltransferase N [Citrobacter koseri ATCC BAA-895] gi|205829699|sp|A8AD69|RLMN_CITK8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157081754|gb|ABV11432.1| hypothetical protein CKO_00268 [Citrobacter koseri ATCC BAA-895] Length = 388 Score = 41.9 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 181 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL + VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 239 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N D R LQ + I Y Sbjct: 240 APN-DEIRDEIVPINRKYNIETFLDAVRRYLQ----KSNANQGRVTIEYVM 285 >gi|153868724|ref|ZP_01998475.1| radical SAM family protein [Beggiatoa sp. PS] gi|152074695|gb|EDN71526.1| radical SAM family protein [Beggiatoa sp. PS] Length = 367 Score = 41.9 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 62/175 (35%), Gaps = 30/175 (17%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDV-PL 103 +C FC D++ G R +V L + E G K Y G GEPLL ++ + Sbjct: 51 RCTFCAVDYI---GYNPVRLDVALLKKRLPEMGQLGIKSIMYA---GEGEPLLHKEIVEI 104 Query: 104 IQALNKRGFEIAVETNGTIEP-------PQGIDWICVSPKAGCDLKIKGGQELKL-VFPQ 155 + G ++A TN TI P I WI VS AG K F + Sbjct: 105 VNLTKNAGIDVAFTTNATIFPKGFIEQALPQISWIKVSINAGTPTTYARIHRTKEKDFAK 164 Query: 156 VNVSPENYIGFDFERF---------SLQPMDGPFLEENTNLA-----ISYCFQNP 196 V + + + + E L P + +EE + I Y P Sbjct: 165 VIENLKTAVAYKKEHHLPVTLGAQALLLPENANEMEELARICRDEIGIDYLVVKP 219 >gi|15789414|ref|NP_279238.1| hypothetical protein VNG0085G [Halobacterium sp. NRC-1] gi|10579736|gb|AAG18718.1| molybdenum cofactor biosynthesis protein [Halobacterium sp. NRC-1] Length = 367 Score = 41.9 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 11/97 (11%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + C +C DT G R N ++ + E LTGGE Sbjct: 29 DRCNFDCVYCHNEGLGDTR-----GPIDPRENELSTDRVVRFLSVAHEFGVDAVKLTGGE 83 Query: 95 PLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 P+L+ D+ I +++ TNGT P + D + Sbjct: 84 PMLRSDLEAIIRRTPDDMAVSMTTNGTFLPGRAADLV 120 >gi|169235126|ref|YP_001688326.1| molybdenum cofactor biosynthesis protein moaA [Halobacterium salinarum R1] gi|24212011|sp|Q9HST4|MOAA_HALSA RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|226704849|sp|B0R2L5|MOAA_HALS3 RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|167726192|emb|CAP12969.1| molybdenum cofactor biosynthesis protein moaA [Halobacterium salinarum R1] Length = 357 Score = 41.9 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 11/97 (11%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + C +C DT G R N ++ + E LTGGE Sbjct: 19 DRCNFDCVYCHNEGLGDTR-----GPIDPRENELSTDRVVRFLSVAHEFGVDAVKLTGGE 73 Query: 95 PLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 P+L+ D+ I +++ TNGT P + D + Sbjct: 74 PMLRSDLEAIIRRTPDDMAVSMTTNGTFLPGRAADLV 110 >gi|302526344|ref|ZP_07278686.1| radical SAM domain-containing protein [Streptomyces sp. AA4] gi|302435239|gb|EFL07055.1| radical SAM domain-containing protein [Streptomyces sp. AA4] Length = 333 Score = 41.9 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 32/98 (32%), Gaps = 20/98 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL G C R V+Q IEE + Sbjct: 38 CNLKCG--------GCG----KIAQPHTLLKQRMPVEQAVGAIEESG------APMVSIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGI 128 GGEPL+ + + + L R I + TN + P+ I Sbjct: 80 GGEPLMHPQIDEITRQLLARNKIIFLCTN-ALLLPKHI 116 >gi|238786698|ref|ZP_04630499.1| pyruvate formate-lyase 3-activating enzyme [Yersinia frederiksenii ATCC 33641] gi|238725066|gb|EEQ16705.1| pyruvate formate-lyase 3-activating enzyme [Yersinia frederiksenii ATCC 33641] Length = 299 Score = 41.9 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G ++D D + + G L+GGEP +Q +V L+Q +K G VE+ Sbjct: 101 GNPIDIDATMDTLLRDLPFYRRSGGGVTLSGGEPFMQPEVAAELLQRCHKLGIHTTVES 159 >gi|303326380|ref|ZP_07356823.1| radical SAM domain protein [Desulfovibrio sp. 3_1_syn3] gi|302864296|gb|EFL87227.1| radical SAM domain protein [Desulfovibrio sp. 3_1_syn3] Length = 391 Score = 41.9 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 6/97 (6%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 C L + + C+ C G + D+ LI+ G + T Sbjct: 45 CRLVAWEVTRSCNLACKHC--RAEAHPEPYPGELSTDEAKALIDTFPQVG---NPIIIFT 99 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127 GG+P+++ DV L+ + +G A NGT+ P+ Sbjct: 100 GGDPMMRPDVYELVAYTHAKGLTCAFSPNGTLITPES 136 >gi|291276833|ref|YP_003516605.1| molybdenum cofactor biosynthesis protein A [Helicobacter mustelae 12198] gi|290964027|emb|CBG39866.1| molybdenum cofactor biosynthesis protein A [Helicobacter mustelae 12198] Length = 323 Score = 41.9 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 8/74 (10%) Query: 46 QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP- 102 +C++C +T F + ++ + + ++ G K+ R +TGGEPLL+ D+P Sbjct: 24 RCQYCMPNTPFDMPDKEEY--VPLENVLEFLKVGINQGIKKIR---ITGGEPLLRQDLPD 78 Query: 103 LIQALNKRGFEIAV 116 I AL E+ + Sbjct: 79 FIAALRAYSKEVEL 92 >gi|241668437|ref|ZP_04756015.1| radical SAM family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876970|ref|ZP_05249680.1| radical SAM family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842991|gb|EET21405.1| radical SAM family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 360 Score = 41.9 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 16/92 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R S++C + ++ ++ +I+ E VL+ Sbjct: 16 CNLKCV--HCRSSSEC----------EVVGHRDFSTEEGFRIIDNIV---EFAKPVLVLS 60 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ D+ L + +G +A+ TNG++ Sbjct: 61 GGEPLLRADIFELAEYGASKGLRMALATNGSL 92 >gi|91776033|ref|YP_545789.1| pyrroloquinoline quinone biosynthesis protein PqqE [Methylobacillus flagellatus KT] gi|91710020|gb|ABE49948.1| Coenzyme PQQ biosynthesis protein E [Methylobacillus flagellatus KT] Length = 397 Score = 41.9 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 10/92 (10%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R C FC TD+ + +Q ++ + G + Sbjct: 20 PLWLLAEVTYRCPLHCAFCYNPTDY---DKHTKNELSTEQWIQVLRDARKLGALQLG--- 73 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 ++GGEPLL+ D+ ++ + G+ + T+G Sbjct: 74 ISGGEPLLRDDIEDIVAEASSLGYYTNLITSG 105 >gi|205358099|ref|ZP_02575805.2| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|62127127|gb|AAX64830.1| pyruvate formate lyase activating enzyme 1 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|205327467|gb|EDZ14231.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|323129235|gb|ADX16665.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326627221|gb|EGE33564.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 292 Score = 41.9 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 58/177 (32%), Gaps = 36/177 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 73 FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEDLMKEVVTYRHFMNASG 117 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKAGCDL 141 +GGE +LQ + +A K G ++TNG ID + V+ DL Sbjct: 118 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDL 177 Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198 K E+ Q V N+ +F ++ ++N + I Y P W Sbjct: 178 KQMN-DEI----HQNLVGVSNHRTLEFAQY--------LSKKNVKVWIRYVVV-PGW 220 >gi|150016880|ref|YP_001309134.1| radical SAM domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149903345|gb|ABR34178.1| Radical SAM domain protein [Clostridium beijerinckii NCIMB 8052] Length = 329 Score = 41.9 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C + G N ++ LI++ + + + + Sbjct: 13 CNL-----------KCSHC---YRDSGKESQGELNTEEAKLLIDQ---IAKANFKIMIFS 55 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPL++ D+ LI +K G + TNGT+ Sbjct: 56 GGEPLMREDIFELINYASKAGLRPVLGTNGTL 87 >gi|313892882|ref|ZP_07826459.1| molybdenum cofactor biosynthesis protein A [Veillonella sp. oral taxon 158 str. F0412] gi|313442235|gb|EFR60650.1| molybdenum cofactor biosynthesis protein A [Veillonella sp. oral taxon 158 str. F0412] Length = 321 Score = 41.9 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 21/107 (19%) Query: 27 CRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 R S CN C +C ++ +VD+ ++E G K Sbjct: 12 VRLSLTDACNFC-----------CPYC-RPAEITPQSQTQLLSVDEWMTILEAFHRIGVK 59 Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGFE--IAVETNGTIEPPQG 127 R LTGGEPLL + L+ +N G+ I++ TNG++ + Sbjct: 60 AVR---LTGGEPLLYPHIEELLGRINDTGWFEDISMTTNGSLLASRA 103 >gi|170289684|ref|YP_001736500.1| Fe-S oxidoreductase [Candidatus Korarchaeum cryptofilum OPF8] gi|170173764|gb|ACB06817.1| Predicted Fe-S oxidoreductase [Candidatus Korarchaeum cryptofilum OPF8] Length = 573 Score = 41.9 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 10/92 (10%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGG---RYNVDQLADLIEEQWITGEKEGRYCVL 90 L + +R + C +C + G +++++ +++ G + Sbjct: 122 LANLVVTNRCNMDCWYC-----FFYAERMGYVYEPSLEEIDRMVDLMLKEKPAHGNAVQI 176 Query: 91 TGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120 TGGEPLL+ D+ +++ L ++G I + T G Sbjct: 177 TGGEPLLRDDIVEIVKLLKRKGVTHIQLNTEG 208 >gi|30263518|ref|NP_845895.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. Ames] gi|47528911|ref|YP_020260.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. 'Ames Ancestor'] gi|49186368|ref|YP_029620.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. Sterne] gi|65320845|ref|ZP_00393804.1| COG2896: Molybdenum cofactor biosynthesis enzyme [Bacillus anthracis str. A2012] gi|165871039|ref|ZP_02215690.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0488] gi|167636277|ref|ZP_02394579.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0442] gi|167640544|ref|ZP_02398806.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0193] gi|170688439|ref|ZP_02879647.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0465] gi|170708165|ref|ZP_02898612.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0389] gi|177652522|ref|ZP_02934989.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0174] gi|190564908|ref|ZP_03017829.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis Tsiankovskii-I] gi|227813602|ref|YP_002813611.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. CDC 684] gi|229603477|ref|YP_002867763.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0248] gi|254686135|ref|ZP_05149994.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. CNEVA-9066] gi|254723532|ref|ZP_05185320.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A1055] gi|254738607|ref|ZP_05196310.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. Western North America USA6153] gi|254744833|ref|ZP_05202511.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. Kruger B] gi|254752925|ref|ZP_05204961.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. Vollum] gi|254759197|ref|ZP_05211223.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. Australia 94] gi|254811535|sp|C3LA56|MOAA_BACAC RecName: Full=Molybdenum cofactor biosynthesis protein A gi|30258153|gb|AAP27381.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. Ames] gi|47504059|gb|AAT32735.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. 'Ames Ancestor'] gi|49180295|gb|AAT55671.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. Sterne] gi|164713250|gb|EDR18776.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0488] gi|167511412|gb|EDR86796.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0193] gi|167528300|gb|EDR91072.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0442] gi|170126973|gb|EDS95853.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0389] gi|170667609|gb|EDT18364.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0465] gi|172082196|gb|EDT67263.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0174] gi|190564225|gb|EDV18189.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis Tsiankovskii-I] gi|227006379|gb|ACP16122.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. CDC 684] gi|229267885|gb|ACQ49522.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0248] Length = 338 Score = 41.9 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D + + + + D++ + G ++ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGPD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ LNK G E I + TNG++ D + VS Sbjct: 75 GEPLLRRGLPQLIERLNKVDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126 >gi|329929622|ref|ZP_08283321.1| pyruvate formate-lyase 1-activating enzyme [Paenibacillus sp. HGF5] gi|328935999|gb|EGG32453.1| pyruvate formate-lyase 1-activating enzyme [Paenibacillus sp. HGF5] Length = 241 Score = 41.9 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 51/154 (33%), Gaps = 44/154 (28%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F T+ G G RF GC +C++C DT Sbjct: 10 ETFGTVDGPG---------IRFVLFMQGC-----------LLKCQYCHNPDT----WGLH 45 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-----GFEIA 115 +G VD + IE G ++GGEP LQ P + L K Sbjct: 46 EGHEMTVDDVLREIEPYLSYYRSSGGGLTVSGGEPTLQ--YPFVTELFKEVKRRWNLHTT 103 Query: 116 VETNGTIEPP------QGIDWICVSPKAGCDLKI 143 +++NG EP + D + + K D K Sbjct: 104 LDSNGYNEPDKISELLEHTDLVLLDLKHINDEKH 137 >gi|320085207|emb|CBY94993.1| pyruvate formate lyase activating enzyme 1 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 292 Score = 41.9 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 58/177 (32%), Gaps = 36/177 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 73 FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEDLMKEVVTYRHFMNASG 117 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKAGCDL 141 +GGE +LQ + +A K G ++TNG ID + V+ DL Sbjct: 118 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDL 177 Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198 K E+ Q V N+ +F ++ ++N + I Y P W Sbjct: 178 KQMN-DEI----HQNLVGVSNHRTLEFAQY--------LSKKNVKVWIRYVVV-PGW 220 >gi|218780045|ref|YP_002431363.1| glycyl-radical enzyme activating protein family [Desulfatibacillum alkenivorans AK-01] gi|218761429|gb|ACL03895.1| Alkylsuccinate synthase (II) glycyl radical activating enzyme (AssD2) [Desulfatibacillum alkenivorans AK-01] Length = 319 Score = 41.9 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119 G V+++ D +E E G L+GGEP ++ RG ++TN Sbjct: 114 GQAMTVEEILDEVESDRPFYENSGGGMTLSGGEPTAHPAFSEKILAGAKARGLHTCLDTN 173 Query: 120 G 120 G Sbjct: 174 G 174 >gi|94967910|ref|YP_589958.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis Ellin345] gi|94549960|gb|ABF39884.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis Ellin345] Length = 351 Score = 41.9 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 14/102 (13%) Query: 40 QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ- 98 R +C CD + + + D L + + + + VLTGGEPL+ Sbjct: 38 HSRCQCKCVMCD----IWRTRESQELDFDLL---VRNRDAFAGLKIEWVVLTGGEPLMHS 90 Query: 99 VDVPLIQALNKRGFEIAVETNG------TIEPPQGIDWICVS 134 + + L + G I + T G E +D + +S Sbjct: 91 RFIDICTFLKQEGVRITLLTAGMSLAKRASEVANCVDEVIIS 132 >gi|257456566|ref|ZP_05621761.1| molybdenum cofactor biosynthesis protein A [Treponema vincentii ATCC 35580] gi|257445986|gb|EEV21034.1| molybdenum cofactor biosynthesis protein A [Treponema vincentii ATCC 35580] Length = 319 Score = 41.9 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 13/104 (12%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +CR+C G+ + + + +++ + ++ +TGGEPL++ Sbjct: 18 DRCNFRCRYC-MPVQGVDYVAHDQ--ILRFEEILRISRLLPRLGIKHIKITGGEPLVRKG 74 Query: 101 V-PLIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134 + LI+ L G E + + TNG + GID + VS Sbjct: 75 ICALIKDLKALEGIEQVTLTTNGYLLEQAAEKLKAAGIDAVNVS 118 >gi|53804818|ref|YP_113314.1| MoaA/NifB/PqqE family protein [Methylococcus capsulatus str. Bath] gi|53758579|gb|AAU92870.1| MoaA/NifB/PqqE family protein [Methylococcus capsulatus str. Bath] Length = 371 Score = 41.9 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C R +V++ ++E + + Sbjct: 38 CNLAC--------AGCG----KIDYPDEILNRRLSVEESLQAVDE------CDAPIVSIA 79 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPLL ++P +++ + R + + TN + + ID SP + + G +E Sbjct: 80 GGEPLLHKELPEIVRGIIARKKYVYLCTN-ALLLKKRIDDYEPSPFLTLSIHLDGNRE 136 >gi|302325942|gb|ADL25143.1| radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 336 Score = 41.9 bits (98), Expect = 0.055, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C+ C + K D+ LI+E G + + + Sbjct: 17 CNLT-----------CKHC---YQDAGENKSAELTTDEALKLIDEIAKAG---FKIMIFS 59 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEP+ + D+ L+ +RG TNGT+ Sbjct: 60 GGEPMTRPDIVELVAHARERGLRPVFGTNGTL 91 >gi|301513618|ref|ZP_07238855.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter baumannii AB058] Length = 384 Score = 41.9 bits (98), Expect = 0.055, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 20/174 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C D+ + + D+ ++ G + + Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFDVFDQARQMGAVQLGF-- 61 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140 +GGEPL+ Q L+ ++ GF + T+G + G+D I +S +A Sbjct: 62 -SGGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTEQRISHLKQAGLDHIQISFQASDP 120 Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 + K F Q +D+ L + + + I C + Sbjct: 121 VVNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIDKIIELCLE 173 >gi|302334931|ref|YP_003800138.1| glycyl-radical enzyme activating protein family [Olsenella uli DSM 7084] gi|301318771|gb|ADK67258.1| glycyl-radical enzyme activating protein family [Olsenella uli DSM 7084] Length = 315 Score = 41.9 bits (98), Expect = 0.055, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 12/80 (15%) Query: 50 CD--TDFVGIQG-------TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99 CD T + G VD + D I + ++GG+PLL Sbjct: 98 CDKCTTHECVDACFQEALAVSGKEMTVDDVMDKIRRDSPV-FRGKGGVTVSGGDPLLYPE 156 Query: 100 -DVPLIQALNKRGFEIAVET 118 L+ G+ +A+E+ Sbjct: 157 FLAELLGRCRDEGYSVALES 176 >gi|289578151|ref|YP_003476778.1| radical SAM protein [Thermoanaerobacter italicus Ab9] gi|289527864|gb|ADD02216.1| Radical SAM domain protein [Thermoanaerobacter italicus Ab9] Length = 726 Score = 41.9 bits (98), Expect = 0.055, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 11/76 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPL 103 C FC G Q ++ QL ++ + +TGGEPL++ PL Sbjct: 421 NCNFC--QIGGPQKDTNKSFDYKQLVRFLK-------GNNYHIQITGGEPLIRKSELTPL 471 Query: 104 IQALNKRGFEIAVETN 119 I+ L K G I + TN Sbjct: 472 IRELKKDGHIITLLTN 487 >gi|228940652|ref|ZP_04103217.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973571|ref|ZP_04134154.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980129|ref|ZP_04140444.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis Bt407] gi|228779611|gb|EEM27863.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis Bt407] gi|228786158|gb|EEM34154.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819031|gb|EEM65091.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 340 Score = 41.9 bits (98), Expect = 0.055, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D + + K + D++ + G ++ R +TG Sbjct: 24 DRCNFRCRYCMPEEIFGPD--YSFLSNEK--ILSFDEIERITRIFVSLGVRKLR---ITG 76 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ LNK G E I + TNG++ D + VS Sbjct: 77 GEPLLRRGLPKLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 128 >gi|197119849|ref|YP_002140276.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase [Geobacter bemidjiensis Bem] gi|197089209|gb|ACH40480.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase [Geobacter bemidjiensis Bem] Length = 316 Score = 41.9 bits (98), Expect = 0.055, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 15/101 (14%) Query: 31 GC-NLWSGREQDRLS---AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 GC N++ G D S +C++C + G R + +AD IE + + Sbjct: 55 GCKNVYDGYMIDVTSQCNLKCKYC---YHANGGEH--RAAAEVIADAIEHRHLGPT---- 105 Query: 87 YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQG 127 +LTGGEP L D+P + E V TNG +G Sbjct: 106 --ILTGGEPTLHPDLPAMVRELAPWNETWVLTNGVKMADEG 144 >gi|261417406|ref|YP_003251089.1| Radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373862|gb|ACX76607.1| Radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 330 Score = 41.9 bits (98), Expect = 0.055, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C+ C + K D+ LI+E G + + + Sbjct: 11 CNLT-----------CKHC---YQDAGENKSAELTTDEALKLIDEIAKAG---FKIMIFS 53 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEP+ + D+ L+ +RG TNGT+ Sbjct: 54 GGEPMTRPDIVELVAHARERGLRPVFGTNGTL 85 >gi|331697466|ref|YP_004333705.1| hopanoid biosynthesis associated radical SAM protein HpnH [Pseudonocardia dioxanivorans CB1190] gi|326952155|gb|AEA25852.1| hopanoid biosynthesis associated radical SAM protein HpnH [Pseudonocardia dioxanivorans CB1190] Length = 334 Score = 41.9 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 20/98 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C R V+Q IEE + Sbjct: 38 CNL-----------KCNGCG-KIQQPAALLKQRMPVEQAVAAIEESG------APMVSIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGI 128 GGEPL+ + +++ L R + + TN + P+ I Sbjct: 80 GGEPLMHPQIDEIVRQLLDRNKIVFLCTN-AVLLPKHI 116 >gi|326941284|gb|AEA17180.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar chinensis CT-43] Length = 338 Score = 41.9 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D + + K + D++ + G ++ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGPD--YSFLSNEK--ILSFDEIERITRIFVSLGVRKLR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ LNK G E I + TNG++ D + VS Sbjct: 75 GEPLLRRGLPKLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126 >gi|302342600|ref|YP_003807129.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075] gi|301639213|gb|ADK84535.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075] Length = 315 Score = 41.9 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 6/84 (7%) Query: 44 SAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDV 101 + C +C+ + T+ GR+ + + + ++ + + L G GEP L +D+ Sbjct: 37 TLDCVYCECGPTTQKTTQRGRFRPAEDVLAQVRKRLEQLDVPPDHITLAGSGEPTLHLDL 96 Query: 102 PL-IQALNK--RGFEIAVETNGTI 122 L ++ L + G +AV TNGT+ Sbjct: 97 GLVLRRLREMNAG-RVAVLTNGTL 119 >gi|170290655|ref|YP_001737471.1| molybdenum cofactor biosynthesis protein A [Candidatus Korarchaeum cryptofilum OPF8] gi|170174735|gb|ACB07788.1| molybdenum cofactor biosynthesis protein A [Candidatus Korarchaeum cryptofilum OPF8] Length = 310 Score = 41.9 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 18/124 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104 C FC +G +++ L+ + + + LTGGEPL++ D+ ++ Sbjct: 24 NCFFC---HREGHYVRGEEMRPEEIGRLM---RVLSKHGVKRVKLTGGEPLMRRDLEEIV 77 Query: 105 QALNKRGF-EIAVETNGTIEP-------PQGIDWICV---SPKAGCDLKIKGGQELKLVF 153 L G E+++ TNG G+D I V S K +I G L+ V Sbjct: 78 SELKSSGAEEVSLVTNGYFLVERARGLREAGLDRINVSLHSLKRDVYERITGVDGLERVL 137 Query: 154 PQVN 157 ++ Sbjct: 138 KGID 141 >gi|30021670|ref|NP_833301.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC 14579] gi|228959754|ref|ZP_04121429.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar pakistani str. T13001] gi|229110990|ref|ZP_04240550.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock1-15] gi|229128840|ref|ZP_04257816.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BDRD-Cer4] gi|229146135|ref|ZP_04274511.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BDRD-ST24] gi|29897225|gb|AAP10502.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC 14579] gi|228637346|gb|EEK93800.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BDRD-ST24] gi|228654545|gb|EEL10407.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BDRD-Cer4] gi|228672474|gb|EEL27758.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock1-15] gi|228799884|gb|EEM46826.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar pakistani str. T13001] Length = 340 Score = 41.9 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D F+ + D++ + G ++ R +TG Sbjct: 24 DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 76 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ LNK G E I + TNG++ D + VS Sbjct: 77 GEPLLRRGLPKLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 128 >gi|15643588|ref|NP_228634.1| astB/chuR-related protein [Thermotoga maritima MSB8] gi|4981357|gb|AAD35907.1|AE001750_1 astB/chuR-related protein [Thermotoga maritima MSB8] Length = 323 Score = 41.9 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 7/83 (8%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100 R + +C+ C + + +++ +LI + G GGEPLL Sbjct: 15 RCNFRCKHC---YCEAGKPHLEELSFEEIKELILDMKELGTWALDIV---GGEPLLHPQI 68 Query: 101 VPLIQALNKRGFEIAVETNGTIE 123 + ++ + G + + TNG++ Sbjct: 69 LDILAFGKEVGQRLMINTNGSLA 91 >gi|314935815|ref|ZP_07843167.1| molybdenum cofactor biosynthesis protein A [Staphylococcus hominis subsp. hominis C80] gi|313656380|gb|EFS20120.1| molybdenum cofactor biosynthesis protein A [Staphylococcus hominis subsp. hominis C80] Length = 340 Score = 41.9 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D DFV + D++ + + G K+ R +TGG Sbjct: 22 DRCNFRCDYCMPKEIFGD-DFVFLPKE--ELLTFDEITTIAKVYAELGVKKLR---ITGG 75 Query: 94 EPLLQVDV-PLIQALNK-RGFE-IAVETNG 120 EPLL+ D+ LI+ LN+ G E I + TNG Sbjct: 76 EPLLRRDLYKLIEKLNRIEGIEDIGLTTNG 105 >gi|311280182|ref|YP_003942413.1| pyruvate formate-lyase activating enzyme [Enterobacter cloacae SCF1] gi|308749377|gb|ADO49129.1| pyruvate formate-lyase activating enzyme [Enterobacter cloacae SCF1] Length = 246 Score = 41.9 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 33/97 (34%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G VD+L + G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVDELMKEVVTYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 72 GGVTASGGEAILQAEFVRDWFRACRKEGIHTCLDTNG 108 >gi|229179852|ref|ZP_04307198.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus 172560W] gi|228603533|gb|EEK61008.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus 172560W] Length = 340 Score = 41.9 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D F+ + D++ + G ++ R +TG Sbjct: 24 DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 76 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ LNK G E I + TNG++ D + VS Sbjct: 77 GEPLLRRGLPKLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 128 >gi|218234531|ref|YP_002368381.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus B4264] gi|218162488|gb|ACK62480.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus B4264] Length = 338 Score = 41.9 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D F+ + D++ + G ++ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ LNK G E I + TNG++ D + VS Sbjct: 75 GEPLLRRGLPKLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126 >gi|14520239|ref|NP_125713.1| pyruvate formate-lyase activating enzyme related protein [Pyrococcus abyssi GE5] gi|5457454|emb|CAB48945.1| Anaerobic ribonucleotide triphosphate reductase activating enzyme [Pyrococcus abyssi GE5] Length = 240 Score = 41.9 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 18/99 (18%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCNL + A C NV+ L + + + + + Sbjct: 24 LCGCNLKCPFCHNWRIADRLEC------------HELNVNSLMEDLSQSSLFIDYFH--- 68 Query: 89 VLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPP 125 +TGGEPL+Q L++ + + G E+++ TN TI P Sbjct: 69 -ITGGEPLVQWRELSDLLRKVEEIGVEVSLNTNLTIVRP 106 >gi|238791148|ref|ZP_04634787.1| pyruvate formate-lyase 3-activating enzyme [Yersinia intermedia ATCC 29909] gi|238729281|gb|EEQ20796.1| pyruvate formate-lyase 3-activating enzyme [Yersinia intermedia ATCC 29909] Length = 314 Score = 41.9 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G ++D + + G L+GGEP +Q DV L+Q ++ G AVE+ Sbjct: 116 GSPIDIDATMATLLRDMPFYRRSGGGVTLSGGEPFMQPDVAAELLQRCHQLGIHTAVES 174 >gi|115525108|ref|YP_782019.1| pyruvate formate-lyase activating enzyme [Rhodopseudomonas palustris BisA53] gi|115519055|gb|ABJ07039.1| pyruvate formate-lyase activating enzyme [Rhodopseudomonas palustris BisA53] Length = 269 Score = 41.9 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 14/94 (14%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 +GC +C++C + + L D+ G Sbjct: 53 LAGC-----------LLRCQYCHNPDSWHMHQGKPTNSREVLRDIATYTNFIAHAHGG-V 100 Query: 89 VLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 L+GGEPL+Q + +++ + G A++T G Sbjct: 101 TLSGGEPLVQPEFAHAILRGCKEMGLHTALDTAG 134 >gi|47568929|ref|ZP_00239621.1| molybdopterin cofactor biosynthesis protein A [Bacillus cereus G9241] gi|47554413|gb|EAL12772.1| molybdopterin cofactor biosynthesis protein A [Bacillus cereus G9241] Length = 338 Score = 41.9 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D F+ + D++ + G ++ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ LNK G E I + TNG++ D + VS Sbjct: 75 GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126 >gi|332184164|gb|AEE26418.1| Radical SAM domain heme biosynthesis protein [Francisella cf. novicida 3523] Length = 360 Score = 41.9 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 24/112 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R S+ C + ++ ++ +I+ VL+ Sbjct: 16 CNLKCV--HCRSSSDC----------EVLGHPDFSTEEGFRIIDS---IAAFANPVLVLS 60 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP--------PQGIDWICVS 134 GGEPLL+ D+ L Q +G +A+ TNG++ I+ + +S Sbjct: 61 GGEPLLRTDIFELAQYGANKGLRMALATNGSLVTDEICEKIKSSSINIVSLS 112 >gi|329907318|ref|ZP_08274630.1| Molybdenum cofactor biosynthesis protein A [Oxalobacteraceae bacterium IMCC9480] gi|327547006|gb|EGF31898.1| Molybdenum cofactor biosynthesis protein A [Oxalobacteraceae bacterium IMCC9480] Length = 371 Score = 41.9 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 25/114 (21%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + T + +++ + G ++ R LTGGE Sbjct: 48 DRCNFRCVYCMPKELFDKDYQFLPQT--ALLSFEEITRMARIFIDHGIEKIR---LTGGE 102 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 PLL+ + LI+ L++ R +I + TNG++ G+ + VS Sbjct: 103 PLLRKHLEKLIEMLSRLKTHSGRDLDITLTTNGSLLAKKAQSLKDAGLKRVTVS 156 >gi|313887787|ref|ZP_07821468.1| radical SAM domain protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846209|gb|EFR33589.1| radical SAM domain protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 492 Score = 41.9 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 14/96 (14%) Query: 32 CNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CN+ D SA +C C + G +++A +I + G Sbjct: 142 CNIPWTILFDPTSACNLKCTGC---WAAEYG-HKNNLTYEEMASIIRQGNELGTYFF--- 194 Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 +LTGGEPL++ D + L + N F + TNGT+ Sbjct: 195 ILTGGEPLVRKDDVIKLAKEFNDSAFHVF--TNGTL 228 >gi|302392807|ref|YP_003828627.1| GTP cyclohydrolase subunit MoaA [Acetohalobium arabaticum DSM 5501] gi|302204884|gb|ADL13562.1| GTP cyclohydrolase subunit MoaA [Acetohalobium arabaticum DSM 5501] Length = 329 Score = 41.9 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 51/138 (36%), Gaps = 31/138 (22%) Query: 41 DRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C GI T ++L D+IE G K+ R LTGGEPL++ Sbjct: 18 DRCNLRCFYC-MPEDGIDLKTHDEILRYEELYDIIESAVKLGFKKIR---LTGGEPLVRK 73 Query: 100 ---------------DVPLIQ--ALNKRGFEIAVETNGTIEPPQGID--------WICVS 134 D+ L L + ++T G +D I S Sbjct: 74 GLVSFIEELEQLEIEDLALTTNGTLLAE-YAAELKTAGLDRVNISLDTLQPGKFGEITCS 132 Query: 135 PKAGCDLKIKGGQELKLV 152 K I+G +E K V Sbjct: 133 DKYSLSDVIRGIKEAKKV 150 >gi|260550419|ref|ZP_05824630.1| coenzyme PQQ synthesis protein E [Acinetobacter sp. RUH2624] gi|260406525|gb|EEX00007.1| coenzyme PQQ synthesis protein E [Acinetobacter sp. RUH2624] Length = 384 Score = 41.9 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 20/174 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C D+ + + D+ ++ G + + Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFDVFDQARQMGAVQLGF-- 61 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140 +GGEPL+ Q L+ ++ GF + T+G + G+D I +S +A Sbjct: 62 -SGGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTEQRISHLKQAGLDHIQISFQASDP 120 Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 + K F Q +D+ L + + + I C + Sbjct: 121 VVNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIDKIIELCLE 173 >gi|20091853|ref|NP_617928.1| coenzyme PQQ synthesis protein E [Methanosarcina acetivorans C2A] gi|19917045|gb|AAM06408.1| coenzyme PQQ synthesis protein E [Methanosarcina acetivorans C2A] Length = 399 Score = 41.9 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + D +F T+ G+ +D LA + + Sbjct: 50 CNLKCVHCYAQAK------DMEFKNELSTEEGKALIDDLAA----------FGSPVMLFS 93 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GGEP ++ D+P L ++G + TNGT+ Sbjct: 94 GGEPTMRKDLPELAAYAREKGMRAVISTNGTL 125 >gi|320161621|ref|YP_004174846.1| hypothetical protein ANT_22200 [Anaerolinea thermophila UNI-1] gi|319995475|dbj|BAJ64246.1| hypothetical protein ANT_22200 [Anaerolinea thermophila UNI-1] Length = 798 Score = 41.9 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 8/66 (12%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-P 102 +C C + G + ++ +L ++ G R+ V+TGGEPL+ ++ P Sbjct: 458 PLRCNHC---YAR-GGRHSPAFPAEKAIELAQQASRAG---FRHFVITGGEPLVHPEIFP 510 Query: 103 LIQALN 108 L++ L Sbjct: 511 LLEHLE 516 >gi|300087565|ref|YP_003758087.1| radical SAM domain-containing protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527298|gb|ADJ25766.1| Radical SAM domain protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 381 Score = 41.9 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR ++G G N ++ LI++ G+ +LT Sbjct: 26 CNLLC--------EHCR-----ASALKGPYPGELNSEECFRLIDQIHQIGQ---PILILT 69 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ D+ + +K+GF + + TNGT+ Sbjct: 70 GGEPLLREDIFEIAGYASKKGFRVVMGTNGTL 101 >gi|255514059|gb|EET90322.1| Radical SAM domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 621 Score = 41.9 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 4/89 (4%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L + +R C +C F +G ++ +L + +TGG Sbjct: 164 LANVVVTNRCHLSCWYC--FFYAKEGEAIYEPSIAELDKIFYNLRNQKPIPANALQITGG 221 Query: 94 EPLLQVDV-PLIQALNKRGF-EIAVETNG 120 EP + + +I+ K GF +I + T G Sbjct: 222 EPTMHPKIVEIIEHAKKAGFDQIQLNTTG 250 >gi|229047248|ref|ZP_04192848.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH676] gi|228724115|gb|EEL75460.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH676] Length = 340 Score = 41.9 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D F+ + D++ + G ++ R +TG Sbjct: 24 DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 76 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ LNK G E I + TNG++ D + VS Sbjct: 77 GEPLLRRGLPKLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 128 >gi|229174229|ref|ZP_04301763.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus MM3] gi|228609247|gb|EEK66535.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus MM3] Length = 338 Score = 41.9 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D F+ + D++ + G ++ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ LNK G E I + TNG++ D + VS Sbjct: 75 GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126 >gi|169795962|ref|YP_001713755.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter baumannii AYE] gi|213157303|ref|YP_002319348.1| coenzyme PQQ biosynthesis protein E [Acinetobacter baumannii AB0057] gi|215483421|ref|YP_002325634.1| coenzyme PQQ biosynthesis protein E [Acinetobacter baumannii AB307-0294] gi|294838033|ref|ZP_06782716.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter sp. 6013113] gi|294857813|ref|ZP_06795582.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter sp. 6013150] gi|301595350|ref|ZP_07240358.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter baumannii AB059] gi|226704985|sp|B7H2Y0|PQQE_ACIB3 RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|226704986|sp|B7I6M8|PQQE_ACIB5 RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|226704989|sp|B0V494|PQQE_ACIBY RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|169148889|emb|CAM86760.1| coenzyme PQQ synthesis protein E (Coenzyme PQQ synthesis protein III) [Acinetobacter baumannii AYE] gi|213056463|gb|ACJ41365.1| coenzyme PQQ biosynthesis protein E [Acinetobacter baumannii AB0057] gi|213988930|gb|ACJ59229.1| coenzyme PQQ biosynthesis protein E [Acinetobacter baumannii AB307-0294] Length = 384 Score = 41.9 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 20/174 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C D+ + + D+ ++ G + + Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFDVFDQARQMGAVQLGF-- 61 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140 +GGEPL+ Q L+ ++ GF + T+G + G+D I +S +A Sbjct: 62 -SGGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTEQRISHLKQAGLDHIQISFQASDP 120 Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 + K F Q +D+ L + + + I C + Sbjct: 121 VVNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIDKIIELCLE 173 >gi|257076727|ref|ZP_05571088.1| molybdenum cofactor biosynthesis protein A [Ferroplasma acidarmanus fer1] Length = 608 Score = 41.9 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 5/100 (5%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L + +R C +C F + ++DQ+ ++ +TGG Sbjct: 146 LGNVVITNRCDLSCWYC--FFYAKENEPIYEPSLDQIRLMLRRMRNEKPVGANAVQITGG 203 Query: 94 EPLLQVD-VPLIQALNKRGFE-IAVETNGTIEPPQGIDWI 131 EP L+ D + +I+ + G+E + + TN ++ D++ Sbjct: 204 EPTLRDDIIDVIRIAREEGYEHVQMNTN-SVRAAYDPDFV 242 >gi|325273058|ref|ZP_08139367.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas sp. TJI-51] gi|324101809|gb|EGB99346.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas sp. TJI-51] Length = 370 Score = 41.9 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C +G N +Q ++ E G + + Sbjct: 4 PLWLLAELTYRCPLQCPYCSNPLDF--AAQGQELNTEQWFKVMAEARQMGAAQ---IGFS 58 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI + G+ + T+G Sbjct: 59 GGEPLVRQDLAELIGEARRLGYYTNLITSG 88 >gi|296504074|ref|YP_003665774.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis BMB171] gi|296325126|gb|ADH08054.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis BMB171] Length = 338 Score = 41.9 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D F+ + D++ + G ++ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ LNK G E I + TNG++ D + VS Sbjct: 75 GEPLLRRGLPKLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126 >gi|288922398|ref|ZP_06416588.1| hopanoid biosynthesis associated radical SAM protein HpnH [Frankia sp. EUN1f] gi|288346269|gb|EFC80608.1| hopanoid biosynthesis associated radical SAM protein HpnH [Frankia sp. EUN1f] Length = 310 Score = 41.9 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 41/133 (30%), Gaps = 23/133 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R +V+ +EE + Sbjct: 38 CNLSCTGCGKIQHPA------------SVLKQRMSVEDALAAVEECG------APVVAIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 GGEPL+ + ++ L KR + + TNG + + + SP L I G LK Sbjct: 80 GGEPLMHPQMHEIVNELVKRKKFVILCTNG-LLLQKKLKNFTPSPYFTFVLHIDG---LK 135 Query: 151 LVFPQVNVSPENY 163 + P + Sbjct: 136 DRHDAIVEKPGTF 148 >gi|283783347|ref|YP_003374101.1| pyruvate formate-lyase 1-activating enzyme [Gardnerella vaginalis 409-05] gi|283442086|gb|ADB14552.1| pyruvate formate-lyase 1-activating enzyme [Gardnerella vaginalis 409-05] Length = 293 Score = 41.9 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 75/217 (34%), Gaps = 60/217 (27%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G +D + ++ Sbjct: 71 RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMIKKVDRYQ 113 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130 + G +GGE ++Q + +A + G ++T+G T E + ID Sbjct: 114 SLFKATGGGITFSGGESMMQPAFVSRVFRAAKEMGVHTCLDTSGFLNRNYTDEMIEDIDL 173 Query: 131 ICVSPKAGCDL---KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL---EEN 184 + K+G + K+ GG Q + + ++ ++ + P L EEN Sbjct: 174 CLLDVKSGTEETYKKVTGG------LLQPTIDFGQRLAKAGKKIWVRFVLVPGLTDSEEN 227 Query: 185 TNLAISYC-----------------FQNPKW---RLS 201 C PKW R+S Sbjct: 228 VEKVAEICDSFGDAVEHIDVLGFHQLGRPKWHELRIS 264 >gi|323343206|ref|ZP_08083437.1| pyruvate formate-lyase activating enzyme [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463270|gb|EFY08465.1| pyruvate formate-lyase activating enzyme [Erysipelothrix rhusiopathiae ATCC 19414] Length = 181 Score = 41.9 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 25/100 (25%) Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI 74 GEG R VF GC C C I G VD++ + I Sbjct: 16 GEGI---RSVVF--TQGCP-----------HNCPGCHNQRS-IPFDGGELIEVDEVINQI 58 Query: 75 EEQWITGEKEGRYCVLTGGEPLLQVD-VPLI-QALNKRGF 112 E + + +GGEP +Q + + LI + L K G+ Sbjct: 59 LEA------DLKRVTFSGGEPFVQAEQLYLIAKRLKKEGY 92 >gi|229014624|ref|ZP_04171738.1| Radical SAM domain protein [Bacillus mycoides DSM 2048] gi|229065107|ref|ZP_04200400.1| Radical SAM domain protein [Bacillus cereus AH603] gi|229136283|ref|ZP_04265030.1| Radical SAM domain protein [Bacillus cereus BDRD-ST196] gi|228647155|gb|EEL03243.1| Radical SAM domain protein [Bacillus cereus BDRD-ST196] gi|228716136|gb|EEL67855.1| Radical SAM domain protein [Bacillus cereus AH603] gi|228746635|gb|EEL96524.1| Radical SAM domain protein [Bacillus mycoides DSM 2048] Length = 238 Score = 41.9 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Query: 93 GEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 3 GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 33 >gi|223985163|ref|ZP_03635255.1| hypothetical protein HOLDEFILI_02561 [Holdemania filiformis DSM 12042] gi|223962872|gb|EEF67292.1| hypothetical protein HOLDEFILI_02561 [Holdemania filiformis DSM 12042] Length = 278 Score = 41.9 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 41/135 (30%) Query: 24 AVFCRFSGCNLWSG------------------------------REQDRLSAQCRFCDTD 53 A+F F GC L + ++C CD Sbjct: 22 AIF--FQGCPLHCAYCHNPETWRICDHCGQCVAGCPAGALTLHAGKVVWEESRCVGCDQC 79 Query: 54 FVG---IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALN 108 K + L D + E + + ++GGE +L D + + Sbjct: 80 IHVCPHHASCKVSELTPEALLDRVAETFPFIQG----ITVSGGECMLYADFLTEFFRLVK 135 Query: 109 KRGFEIAVETNGTIE 123 G +++NG ++ Sbjct: 136 AAGKTCLIDSNGILD 150 >gi|239616700|ref|YP_002940022.1| Radical SAM domain protein [Kosmotoga olearia TBF 19.5.1] gi|239505531|gb|ACR79018.1| Radical SAM domain protein [Kosmotoga olearia TBF 19.5.1] Length = 481 Score = 41.9 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 21/92 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + G+ G K + + +++ LI + G ++T Sbjct: 121 CNL-----------NCVGC---YAGLYGRKY-QLSKEEVWSLIRQANELGIYFF---IIT 162 Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 GGEP + + ++ N F+I TNGT+ Sbjct: 163 GGEPFVWPHLMETLKEFNDSYFQIY--TNGTL 192 >gi|330970881|gb|EGH70947.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. aceris str. M302273PT] Length = 389 Score = 41.9 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C + +G + Q +++E G + + Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELSTAQWFKVMQEAREMGAAQ---IGFS 76 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI + GF + T+G Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSG 106 >gi|119897531|ref|YP_932744.1| putative qinohemoprotein amine dehydrogenase [Azoarcus sp. BH72] gi|119669944|emb|CAL93857.1| conserved hypothetical qinohemoprotein amine dehydrogenase, unknown subunit [Azoarcus sp. BH72] Length = 476 Score = 41.9 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 25/83 (30%) Query: 30 SGCNLWSGREQDRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +GCNL C +C DT + G + ++D IE E Sbjct: 110 TGCNL-----------SCTYCYKEDLDTP------SAGRKMSLDTARASIELLLRESPDE 152 Query: 85 GRY-CVLTGGEPLLQVDVPLIQA 106 RY V GGEPL ++PLI+A Sbjct: 153 PRYTVVFFGGEPL--SNLPLIKA 173 >gi|87309369|ref|ZP_01091505.1| radical SAM domain protein [Blastopirellula marina DSM 3645] gi|87288008|gb|EAQ79906.1| radical SAM domain protein [Blastopirellula marina DSM 3645] Length = 298 Score = 41.9 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 15/102 (14%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW R + C C FV G ++ + +EE G KE + T Sbjct: 17 LWFQVTGLRCNLACHHC---FVSCHPKNNTFGFLSLADVESRLEEAAALGVKEFYF---T 70 Query: 92 GGEPLLQVDVP--LIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GGEP L + LI AL G + V TNGT+ DW+ Sbjct: 71 GGEPFLHPQIVPILIAAL-AYG-PVTVLTNGTV---LKADWL 107 >gi|23015289|ref|ZP_00055069.1| COG0535: Predicted Fe-S oxidoreductases [Magnetospirillum magnetotacticum MS-1] Length = 374 Score = 41.9 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 11/101 (10%) Query: 23 VAVFCRF--SGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 A R G LW E R QC +C+ G+ + ++ ++ E Sbjct: 6 PA--LRLDGQGKPLWLVCELTYRCPLQCSWCNNPLEF--GSITDELSTEEWKRVLAESRA 61 Query: 80 TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119 G + + TGGEP L+ D+ L+ ++ G+ + T+ Sbjct: 62 LGSLQLGF---TGGEPALRPDLEELVAEADRLGYYTNLITS 99 >gi|325526527|gb|EGD04086.1| hypothetical protein B1M_13210 [Burkholderia sp. TJI49] Length = 476 Score = 41.9 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 35/118 (29%) Query: 30 SGCNLWSGREQDRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +GCNL C +C DT + G R ++D +E Sbjct: 110 TGCNL-----------SCTYCYKEDLDTP------SAGRRMDLDTAKASVEMLLKESPDL 152 Query: 85 GRY-CVLTGGEPLLQVDVPLIQ--------ALNKRGFEIA--VETNGTIEPPQGIDWI 131 RY V GGEPL + LI+ G ++ + TN T+ + +DW+ Sbjct: 153 PRYTVVFFGGEPL--SNRKLIETMVEYCELRFGALGKQVEFVMTTNATLLTEEIVDWL 208 >gi|306824472|ref|ZP_07457818.1| pyruvate formate-lyase activating enzyme [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433259|gb|EFM36229.1| pyruvate formate-lyase activating enzyme [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 264 Score = 41.9 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 21/99 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC++ +C++C DT + R D L + + + G Sbjct: 33 VF--LQGCHM-----------RCQYCHNPDT-WAMETNKSRERTVDDVLTEALRYRGFWG 78 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 +K G ++GGE LLQ+D + L ++G ++T Sbjct: 79 DKGG--ITVSGGEALLQIDFLIALFTKAKEKGIHCTLDT 115 >gi|239502592|ref|ZP_04661902.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter baumannii AB900] gi|260555008|ref|ZP_05827229.1| coenzyme PQQ biosynthesis protein E [Acinetobacter baumannii ATCC 19606] gi|260411550|gb|EEX04847.1| coenzyme PQQ biosynthesis protein E [Acinetobacter baumannii ATCC 19606] Length = 384 Score = 41.9 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 20/174 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C D+ + + D+ ++ G + + Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFDVFDQARQMGAVQLGF-- 61 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140 +GGEPL+ Q L+ ++ GF + T+G + G+D I +S +A Sbjct: 62 -SGGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTEQRISHLKQAGLDHIQISFQASDP 120 Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 + K F Q +D+ L + + + I C + Sbjct: 121 VVNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIDKIIELCLE 173 >gi|255654246|ref|ZP_05399655.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile QCD-23m63] gi|296452531|ref|ZP_06894228.1| pyruvate formate-lyase activating enzyme [Clostridium difficile NAP08] gi|296881057|ref|ZP_06905000.1| pyruvate formate-lyase activating enzyme [Clostridium difficile NAP07] gi|296258636|gb|EFH05534.1| pyruvate formate-lyase activating enzyme [Clostridium difficile NAP08] gi|296427923|gb|EFH13827.1| pyruvate formate-lyase activating enzyme [Clostridium difficile NAP07] Length = 316 Score = 41.9 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 Y VD+L +I+ + +GGEPLLQ + ++ ++ A+ET+ Sbjct: 117 YTVDELVQVIKRD-SNNWRSNGGVTFSGGEPLLQHEFLHEVLLKCHEVNIHTAIETS 172 >gi|206975468|ref|ZP_03236381.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus H3081.97] gi|222097023|ref|YP_002531080.1| molybdenum cofactor biosynthesis protein a [Bacillus cereus Q1] gi|206746370|gb|EDZ57764.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus H3081.97] gi|221241081|gb|ACM13791.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus Q1] Length = 338 Score = 41.9 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D F+ + D++ + G ++ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ LNK G E I + TNG++ D + VS Sbjct: 75 GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126 >gi|206969370|ref|ZP_03230325.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1134] gi|206736411|gb|EDZ53569.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1134] Length = 338 Score = 41.9 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D F+ + D++ + G ++ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ LNK G E I + TNG++ D + VS Sbjct: 75 GEPLLRRGLPKLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126 >gi|160914926|ref|ZP_02077140.1| hypothetical protein EUBDOL_00934 [Eubacterium dolichum DSM 3991] gi|158433466|gb|EDP11755.1| hypothetical protein EUBDOL_00934 [Eubacterium dolichum DSM 3991] Length = 177 Score = 41.9 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 19/86 (22%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GC + C+ C G Y VD L I+E + Sbjct: 28 TQGC-----------THHCQDCHNPQTW-DMQGGAEYAVDDLVQAIQEAQLQTG-----I 70 Query: 89 VLTGGEPLLQV--DVPLIQALNKRGF 112 +GGEP LQ +PL +A ++G+ Sbjct: 71 TFSGGEPFLQAEKLIPLAKAAKEKGY 96 >gi|298682250|gb|ADI95314.1| PqqE [Pseudomonas putida] Length = 386 Score = 41.9 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C +G + +Q ++ E G + + Sbjct: 20 PLWLLAELTYRCPLQCPYCSNPLDF--AAQGQELSTEQWFKVMAEAREMGAAQ---IGFS 74 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI + G+ + T+G Sbjct: 75 GGEPLVRQDLAQLIAEARRLGYYTNLITSG 104 >gi|239616931|ref|YP_002940253.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Kosmotoga olearia TBF 19.5.1] gi|239505762|gb|ACR79249.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Kosmotoga olearia TBF 19.5.1] Length = 217 Score = 41.9 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Query: 88 CVLTGGEPLL--QVDVPLIQALNKR--GFEIAVETNGTIE 123 V+TGGEP L + + L KR G I V+TNG+ Sbjct: 66 VVITGGEPTLHGHALLSFFKELKKRFPGKFIKVDTNGSNP 105 >gi|218690027|ref|YP_002398239.1| putative Radical SAM superfamily [Escherichia coli ED1a] gi|218427591|emb|CAR08492.2| hypothetical protein, putative Radical SAM superfamily [Escherichia coli ED1a] Length = 318 Score = 41.9 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 9/77 (11%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQ 105 C C ++ + + G NV++ ++I + + G R ++TGGEPLL D + L Sbjct: 19 CPHC---YLDNKTSLG--LNVNEWKNVITKLMLKG---CRKLIITGGEPLLYKDFISLYT 70 Query: 106 ALNKRGFEIAVETNGTI 122 ++++G +I++ TN ++ Sbjct: 71 FIHQQGIDISLFTNASL 87 >gi|295835543|ref|ZP_06822476.1| hopanoid biosynthesis associated radical SAM protein HpnH [Streptomyces sp. SPB74] gi|197699435|gb|EDY46368.1| hopanoid biosynthesis associated radical SAM protein HpnH [Streptomyces sp. SPB74] Length = 340 Score = 41.9 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 38 CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + +++ L + + + TN + + I+ SP + I G +E Sbjct: 80 GGEPLMHPQIDEIVRQLVAKRKYVFLCTN-AMLLRKKIEKFTPSPYFAFAVHIDGLKE 136 >gi|148545656|ref|YP_001265758.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas putida F1] gi|166989889|sp|A5VXG4|PQQE_PSEP1 RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|148509714|gb|ABQ76574.1| coenzyme PQQ biosynthesis protein E [Pseudomonas putida F1] Length = 376 Score = 41.9 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C +G + +Q ++ E G + + Sbjct: 10 PLWLLAELTYRCPLQCPYCSNPLDF--AAQGQELSTEQWFKVMAEAREMGAAQ---IGFS 64 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI + G+ + T+G Sbjct: 65 GGEPLVRQDLAQLIAEARRLGYYTNLITSG 94 >gi|320107306|ref|YP_004182896.1| coenzyme PQQ biosynthesis protein E [Terriglobus saanensis SP1PR4] gi|319925827|gb|ADV82902.1| coenzyme PQQ biosynthesis protein E [Terriglobus saanensis SP1PR4] Length = 364 Score = 41.9 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 6/80 (7%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R C +C + + D I+ + TGGEPL + D+ Sbjct: 24 RCPLHCLYCSNPIEMQRAE-----DELSTKDWIQVFRQAALLGILHVHFTGGEPLARKDL 78 Query: 102 P-LIQALNKRGFEIAVETNG 120 P LI+A + G + + T+G Sbjct: 79 PELIRAAREAGLYVNMITSG 98 >gi|294340470|emb|CAZ88851.1| putative radical SAM enzyme, Cfr family, yfgB [Thiomonas sp. 3As] Length = 379 Score = 41.9 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 45/131 (34%), Gaps = 30/131 (22%) Query: 24 AVFC----RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-- 77 AVF R N Q + C+FC T G QG + LA L + Sbjct: 97 AVFIPEAQR----NTLCVSSQAGCAVNCKFCST---GHQGFSRNLQTWEILAQLWHAEFT 149 Query: 78 ------WITGEKEGRYCVLTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETNGT 121 GE+ V+ G GEPL Q L+ AL G+ + V T+G Sbjct: 150 MRRELGLPGGERAISNVVMMGMGEPL-QNYSALVPALRTMLDDDGYGLSRRRVTVSTSGV 208 Query: 122 IEPPQGIDWIC 132 + + C Sbjct: 209 VPMIDRLSQDC 219 >gi|294496104|ref|YP_003542597.1| radical SAM protein [Methanohalophilus mahii DSM 5219] gi|292667103|gb|ADE36952.1| Radical SAM domain protein [Methanohalophilus mahii DSM 5219] Length = 351 Score = 41.9 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR G + + I++ G +L+ Sbjct: 21 CNLSC--------VHCRG-----ASTDEEAIGELDTFEAKTFIDQVASLG---SPILILS 64 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPL++ DV L +G + + TNGT+ Sbjct: 65 GGEPLVRPDVYELAHYGTNKGLRVVLATNGTL 96 >gi|292489544|ref|YP_003532432.1| Coenzyme PQQ synthesis protein E [Erwinia amylovora CFBP1430] gi|292898240|ref|YP_003537609.1| coenzyme PQQ synthesis protein E [Erwinia amylovora ATCC 49946] gi|291198088|emb|CBJ45191.1| coenzyme PQQ synthesis protein E (pyrroloquinoline quinon biosynthesis protein E) [Erwinia amylovora ATCC 49946] gi|291554979|emb|CBA22988.1| Coenzyme PQQ synthesis protein E [Erwinia amylovora CFBP1430] gi|312173716|emb|CBX81970.1| Coenzyme PQQ synthesis protein E [Erwinia amylovora ATCC BAA-2158] Length = 382 Score = 41.9 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF + Q D+ ++ G + Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFARQEKE----LTTAQWIDVFKQARAMGAVQ---IG 63 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL++ D+P LI++ GF + T+G Sbjct: 64 FSGGEPLVRNDLPELIRSARDLGFYTNLITSG 95 >gi|296136235|ref|YP_003643477.1| radical SAM enzyme, Cfr family [Thiomonas intermedia K12] gi|295796357|gb|ADG31147.1| radical SAM enzyme, Cfr family [Thiomonas intermedia K12] Length = 379 Score = 41.9 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 45/131 (34%), Gaps = 30/131 (22%) Query: 24 AVFC----RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-- 77 AVF R N Q + C+FC T G QG + LA L + Sbjct: 97 AVFIPEAQR----NTLCVSSQAGCAVNCKFCST---GHQGFSRNLQTWEILAQLWHAEFT 149 Query: 78 ------WITGEKEGRYCVLTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETNGT 121 GE+ V+ G GEPL Q L+ AL G+ + V T+G Sbjct: 150 MRRELGLPGGERAISNVVMMGMGEPL-QNYSALVPALRTMLDDDGYGLSRRRVTVSTSGV 208 Query: 122 IEPPQGIDWIC 132 + + C Sbjct: 209 VPMIDRLSQDC 219 >gi|229020682|ref|ZP_04177411.1| Radical SAM domain protein [Bacillus cereus AH1273] gi|229026898|ref|ZP_04183222.1| Radical SAM domain protein [Bacillus cereus AH1272] gi|228734401|gb|EEL85071.1| Radical SAM domain protein [Bacillus cereus AH1272] gi|228740610|gb|EEL90879.1| Radical SAM domain protein [Bacillus cereus AH1273] Length = 238 Score = 41.9 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Query: 93 GEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 3 GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 33 >gi|229035103|ref|ZP_04189049.1| Radical SAM domain protein [Bacillus cereus AH1271] gi|229176133|ref|ZP_04303626.1| Radical SAM domain protein [Bacillus cereus MM3] gi|228607368|gb|EEK64697.1| Radical SAM domain protein [Bacillus cereus MM3] gi|228728169|gb|EEL79199.1| Radical SAM domain protein [Bacillus cereus AH1271] Length = 238 Score = 41.9 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Query: 93 GEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 3 GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 33 >gi|217960969|ref|YP_002339537.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH187] gi|217063865|gb|ACJ78115.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH187] Length = 338 Score = 41.9 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D F+ + D++ + G ++ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ LNK G E I + TNG++ D + VS Sbjct: 75 GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126 >gi|160875513|ref|YP_001554829.1| radical SAM domain-containing protein [Shewanella baltica OS195] gi|160861035|gb|ABX49569.1| Radical SAM domain protein [Shewanella baltica OS195] Length = 298 Score = 41.9 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 17/105 (16%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCV 89 NL + S +C CDT + Y V+++ ++ Q Sbjct: 72 NLNNKPRISWDSERCSQCDTCLAVCPKQASPKVTHYTVEEILGILHSQR----HFINGIT 127 Query: 90 LTGGEPLLQVDVPLIQALNK--------RGFEIAVETNGTIEPPQ 126 ++GGE LQ +P I AL K ++TNG++ Sbjct: 128 VSGGEASLQ--LPFIIALFKGIKASESLSHLTCMLDTNGSLSLTG 170 >gi|53715771|ref|YP_101763.1| putative heme biosynthesis protein [Bacteroides fragilis YCH46] gi|60683702|ref|YP_213846.1| putative radical SAM-family protein [Bacteroides fragilis NCTC 9343] gi|52218636|dbj|BAD51229.1| putative heme biosynthesis protein [Bacteroides fragilis YCH46] gi|60495136|emb|CAH09957.1| putative radical SAM-family protein [Bacteroides fragilis NCTC 9343] Length = 361 Score = 41.9 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 14/99 (14%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C+ C +D + ++ +++ ++T Sbjct: 43 CNL-----------ACKHCGSD--CRKMSEQKDMPAADFLQVVDSITPHVNPNEVNIIIT 89 Query: 92 GGEPLLQVDVPLIQ-ALNKRGFEIAVETNGTIEPPQGID 129 GGEPL++ D+ + AL ++G+ + +NG + +D Sbjct: 90 GGEPLMRDDLEEVGMALYRKGYPWGIVSNGLYLTRERLD 128 >gi|26987118|ref|NP_742543.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas putida KT2440] gi|32363295|sp|Q88QV8|PQQE_PSEPK RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|24981747|gb|AAN66007.1|AE016229_8 coenzyme PQQ synthesis protein E [Pseudomonas putida KT2440] Length = 376 Score = 41.9 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C +G + +Q ++ E G + + Sbjct: 10 PLWLLAELTYRCPLQCPYCSNPLDF--AAQGQELSTEQWFKVMAEAREMGAAQ---IGFS 64 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI + G+ + T+G Sbjct: 65 GGEPLVRQDLAQLIAEARRLGYYTNLITSG 94 >gi|331086093|ref|ZP_08335176.1| hypothetical protein HMPREF0987_01479 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407016|gb|EGG86521.1| hypothetical protein HMPREF0987_01479 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 303 Score = 41.9 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIAVET 118 G Y + +L IE+ + E+ G L+GGE + Q L++ L ++G+ +A++T Sbjct: 103 GKEYTISELMKEIEKDCMFYEESGGGVTLSGGEVMAQDMDYIEQLLKKLKRKGYNVAIDT 162 Query: 119 NG 120 G Sbjct: 163 CG 164 >gi|294055622|ref|YP_003549280.1| pyruvate formate-lyase activating enzyme [Coraliomargarita akajimensis DSM 45221] gi|293614955|gb|ADE55110.1| pyruvate formate-lyase activating enzyme [Coraliomargarita akajimensis DSM 45221] Length = 262 Score = 41.9 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 28/127 (22%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 +GC L +C +C D G + + + + + + + + G Sbjct: 47 LNGCPL-----------RCMYCHNPD----AQGKPHGEQKSPETVIEDVIKYRNFIKDGG 91 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWICVSPKA 137 ++GGEPL+Q + + G ++T+G + E D + + K+ Sbjct: 92 --LTISGGEPLMQPQFVEETFKLAKEAGLHTTLDTSGFLGHKASDELLDNTDLVLLDIKS 149 Query: 138 GCDLKIK 144 L K Sbjct: 150 WSPLTYK 156 >gi|291521582|emb|CBK79875.1| Predicted Fe-S oxidoreductases [Coprococcus catus GD/7] Length = 292 Score = 41.9 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 28/109 (25%) Query: 28 RFSG--------CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF CNL C FC T +VD+ A + + Sbjct: 5 RFQKIYIEIINRCNL-----------SCSFCPT-----SDRPARMMSVDEFAKIAAQVTP 48 Query: 80 TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127 + + GEPL+ + ++ ++ G ++ + TN + P + Sbjct: 49 FTDYICLHVK---GEPLMHPWLGDILAIAHQNGLKVNLTTNAVLLPEKH 94 >gi|289167177|ref|YP_003445444.1| pyruvate-formate lyase activating enzyme [Streptococcus mitis B6] gi|288906742|emb|CBJ21576.1| pyruvate-formate lyase activating enzyme [Streptococcus mitis B6] Length = 264 Score = 41.9 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 21/99 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC++ +C++C DT + R D L + + + G Sbjct: 33 VF--LQGCHM-----------RCQYCHNPDT-WAMESNKSRERTVDDVLTEALRYRGFWG 78 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 K G ++GGE LLQ+D + L + G ++T Sbjct: 79 NKGG--ITVSGGEALLQIDFLIALFTKAKEHGIHCTLDT 115 >gi|253566416|ref|ZP_04843869.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265767276|ref|ZP_06094942.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|251944588|gb|EES85063.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263252581|gb|EEZ24093.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301165287|emb|CBW24858.1| putative radical SAM-family protein [Bacteroides fragilis 638R] Length = 361 Score = 41.9 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 14/99 (14%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C+ C +D + ++ +++ ++T Sbjct: 43 CNL-----------ACKHCGSD--CRKMSEQKDMPAADFLQVVDSITPHVNPNEVNIIIT 89 Query: 92 GGEPLLQVDVPLIQ-ALNKRGFEIAVETNGTIEPPQGID 129 GGEPL++ D+ + AL ++G+ + +NG + +D Sbjct: 90 GGEPLMRDDLEEVGMALYRKGYPWGIVSNGLYLTRERLD 128 >gi|184158118|ref|YP_001846457.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter baumannii ACICU] gi|294841773|ref|ZP_06786456.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter sp. 6014059] gi|226704987|sp|B2I0I5|PQQE_ACIBC RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|183209712|gb|ACC57110.1| predicted Fe-S oxidoreductase [Acinetobacter baumannii ACICU] gi|323518059|gb|ADX92440.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter baumannii TCDC-AB0715] Length = 384 Score = 41.9 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 20/174 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C D+ + + D+ ++ G + + Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFDVFDQARQMGAVQLGF-- 61 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140 +GGEPL+ Q L+ ++ GF + T+G + G+D I +S +A Sbjct: 62 -SGGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTEQRISHLKQAGLDHIQISFQASDP 120 Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 + K F Q +D+ L + + + I C + Sbjct: 121 VVNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIDKIIELCLE 173 >gi|150025123|ref|YP_001295949.1| hypothetical protein FP1044 [Flavobacterium psychrophilum JIP02/86] gi|149771664|emb|CAL43138.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86] Length = 463 Score = 41.9 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 60/180 (33%), Gaps = 39/180 (21%) Query: 31 GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G D C C T + G ++++ + + + Sbjct: 80 GCPYDCGLCTDHEQHSCLTVIEVTDRCNLSCPTCYASSAPNYGRHRTLEEIEKMFD-VVV 138 Query: 80 TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKA 137 E E ++GGEP + D ++ + + V TNG Sbjct: 139 ANEGEPDVIQISGGEPTVHPDFFRILDIAKSKPIKHLMVNTNG----------------- 181 Query: 138 GCDLKIKGGQELKLVFPQVNVSP--ENYIGFD-FERFSLQPMDGPFLEENTNLAISYCFQ 194 I+ +++K V P E Y+ FD F++ L+ + G L E AI + Q Sbjct: 182 -----IRIAKDIKFVEKLATYMPDFELYLQFDSFKKEVLEKLRGEDLTEVRKKAIDHLNQ 236 >gi|325662287|ref|ZP_08150902.1| hypothetical protein HMPREF0490_01640 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471539|gb|EGC74760.1| hypothetical protein HMPREF0490_01640 [Lachnospiraceae bacterium 4_1_37FAA] Length = 303 Score = 41.9 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIAVET 118 G Y + +L IE+ + E+ G L+GGE + Q L++ L ++G+ +A++T Sbjct: 103 GKEYTISELMKEIEKDCMFYEESGGGVTLSGGEVMAQDMDYIEQLLKKLKRKGYNVAIDT 162 Query: 119 NG 120 G Sbjct: 163 CG 164 >gi|261494073|ref|ZP_05990576.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496086|ref|ZP_05992496.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308336|gb|EEY09629.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310239|gb|EEY11439.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 246 Score = 41.9 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G V++L + Sbjct: 21 IRFILFLQGC-----------LMRCKYCHNRDT----WDLDGGKEITVEELMKEVTTYKH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 + G +GGE +LQ++ +A G ++TNG Sbjct: 66 FMKATGGGVTASGGEAVLQMEFVRDWFRACKAEGINTCLDTNG 108 >gi|228988685|ref|ZP_04148771.1| Radical SAM domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771136|gb|EEM19616.1| Radical SAM domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 238 Score = 41.9 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Query: 93 GEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 3 GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 33 >gi|228911295|ref|ZP_04075099.1| Radical SAM domain protein [Bacillus thuringiensis IBL 200] gi|229181703|ref|ZP_04309026.1| Radical SAM domain protein [Bacillus cereus 172560W] gi|229193708|ref|ZP_04320649.1| Radical SAM domain protein [Bacillus cereus ATCC 10876] gi|228589733|gb|EEK47611.1| Radical SAM domain protein [Bacillus cereus ATCC 10876] gi|228601736|gb|EEK59234.1| Radical SAM domain protein [Bacillus cereus 172560W] gi|228848313|gb|EEM93163.1| Radical SAM domain protein [Bacillus thuringiensis IBL 200] Length = 238 Score = 41.9 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Query: 93 GEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 3 GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 33 >gi|156933758|ref|YP_001437674.1| hypothetical protein ESA_01584 [Cronobacter sakazakii ATCC BAA-894] gi|156532012|gb|ABU76838.1| hypothetical protein ESA_01584 [Cronobacter sakazakii ATCC BAA-894] Length = 302 Score = 41.9 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G +V+ + D + + G L+GGEP +Q ++ L+Q + G AVE+ Sbjct: 104 GESRSVEAIMDTVLRDRPFYARSGGGITLSGGEPFMQPEMAKALLQRSREAGIHTAVES 162 >gi|254362790|ref|ZP_04978871.1| hypothetical protein gi|153094419|gb|EDN75267.1| [formate-C-acetyltransferase]-activating enzyme [Mannheimia haemolytica PHL213] Length = 246 Score = 41.9 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G V++L + Sbjct: 21 IRFILFLQGC-----------LMRCKYCHNRDT----WDLDGGKEITVEELMKEVTTYKH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 + G +GGE +LQ++ +A G ++TNG Sbjct: 66 FMKATGGGVTASGGEAVLQMEFVRDWFRACKAEGINTCLDTNG 108 >gi|160903005|ref|YP_001568586.1| radical SAM domain-containing protein [Petrotoga mobilis SJ95] gi|160360649|gb|ABX32263.1| Radical SAM domain protein [Petrotoga mobilis SJ95] Length = 296 Score = 41.9 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 24/114 (21%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDF-VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCNL C +C + VG R + +E+ + E Sbjct: 10 GGCNL-----------SCSYC--YYQVGNLHYSPTRLKPSDVEQWVEKCMHLMKIES--I 54 Query: 89 VLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDW-------ICVS 134 TGGEPLL+ D ++ + G + V TNGT+ + + +CVS Sbjct: 55 TFTGGEPLLRRDFFEFVEIPIRYGIDTRVLTNGTLLTDKHASFFRDNNVEVCVS 108 >gi|297243355|ref|ZP_06927288.1| pyruvate formate-lyase 1 activating enzyme [Gardnerella vaginalis AMD] gi|296888602|gb|EFH27341.1| pyruvate formate-lyase 1 activating enzyme [Gardnerella vaginalis AMD] Length = 293 Score = 41.9 bits (98), Expect = 0.062, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 28/135 (20%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G +D + ++ Sbjct: 71 RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMIKKVDRYQ 113 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130 + G +GGE ++Q + +A + G ++T+G T E + ID Sbjct: 114 SLFKATGGGITFSGGESMMQPAFVSRVFRAAKEMGVHTCLDTSGFLNRNYTDEMIEDIDL 173 Query: 131 ICVSPKAGCDLKIKG 145 + K+G + K Sbjct: 174 CLLDVKSGTEETYKK 188 >gi|294495235|ref|YP_003541728.1| radical SAM protein [Methanohalophilus mahii DSM 5219] gi|292666234|gb|ADE36083.1| Radical SAM domain protein [Methanohalophilus mahii DSM 5219] Length = 397 Score = 41.9 bits (98), Expect = 0.062, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + D DF G T+ G+ +D LA + + + Sbjct: 50 CNLKCIHCYAQAD------DKDFEGELSTEEGKRLIDDLAA----------FKTPVILFS 93 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GGEPL++ D+P L + +G + TNGT+ Sbjct: 94 GGEPLVRKDLPELAEYAVSKGLRAVISTNGTL 125 >gi|302522957|ref|ZP_07275299.1| radical SAM domain-containing protein [Streptomyces sp. SPB78] gi|318058271|ref|ZP_07976994.1| hypothetical protein SSA3_10023 [Streptomyces sp. SA3_actG] gi|318076933|ref|ZP_07984265.1| hypothetical protein SSA3_09465 [Streptomyces sp. SA3_actF] gi|302431852|gb|EFL03668.1| radical SAM domain-containing protein [Streptomyces sp. SPB78] Length = 340 Score = 41.9 bits (98), Expect = 0.062, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 38 CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + +++ L + + + TN + + I+ SP + I G +E Sbjct: 80 GGEPLMHPQIDEIVRQLVAKRKYVFLCTN-AMLLRKKIEKFTPSPYFAFAVHIDGLKE 136 >gi|71906049|ref|YP_283636.1| radical SAM family protein [Dechloromonas aromatica RCB] gi|71845670|gb|AAZ45166.1| Radical SAM [Dechloromonas aromatica RCB] Length = 474 Score = 41.9 bits (98), Expect = 0.062, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 20/106 (18%) Query: 31 GCNLWSGREQDRLS--------------AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 GC G D + +C C + + ++ ++ +++ Sbjct: 83 GCPYDCGLCPDHMQHSCLSVVEITEHCNLRCPVC---YAESGPERQTHRSLAEVEAMLDA 139 Query: 77 QWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNG 120 + E E L+GGEP L D ++ A R + V TNG Sbjct: 140 V-VANEGEPDVVQLSGGEPTLHPDFFAILDAAKARPIRHLMVNTNG 184 >gi|205352177|ref|YP_002225978.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856361|ref|YP_002243012.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|16419481|gb|AAL19904.1| pyruvate formate lyase activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205271958|emb|CAR36802.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708164|emb|CAR32457.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261246186|emb|CBG23990.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301157513|emb|CBW17003.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] Length = 274 Score = 41.9 bits (98), Expect = 0.062, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 58/177 (32%), Gaps = 36/177 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 55 FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEDLMKEVVTYRHFMNASG 99 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKAGCDL 141 +GGE +LQ + +A K G ++TNG ID + V+ DL Sbjct: 100 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDL 159 Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198 K E+ Q V N+ +F ++ ++N + I Y P W Sbjct: 160 KQMN-DEI----HQNLVGVSNHRTLEFAQY--------LSKKNVKVWIRYVVV-PGW 202 >gi|147677019|ref|YP_001211234.1| Fe-S oxidoreductases [Pelotomaculum thermopropionicum SI] gi|146273116|dbj|BAF58865.1| predicted Fe-S oxidoreductases [Pelotomaculum thermopropionicum SI] Length = 463 Score = 41.9 bits (98), Expect = 0.062, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 22/106 (20%) Query: 31 GCNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 GC G R + +C FC F G G ++D + + Sbjct: 78 GCPFDCGLCPAHRQLTCCVLLEVTGRCNLKCPFC---FAG-AGNGDADPDLDTIRNWYRR 133 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120 G L+GGEP L+ D+P L+ GF I + TNG Sbjct: 134 LLDAGG--PFNVQLSGGEPTLRDDLPELVALGRSMGFSYIQLNTNG 177 >gi|315611872|ref|ZP_07886791.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis ATCC 49296] gi|315316050|gb|EFU64083.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis ATCC 49296] Length = 264 Score = 41.5 bits (97), Expect = 0.063, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 21/99 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC++ +C++C DT + R D L + + + G Sbjct: 33 VF--LQGCHM-----------RCQYCHNPDT-WAMETNKSRERTVDDVLTEALRYRGFWG 78 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 +K G ++GGE LLQ+D + L ++G ++T Sbjct: 79 DKGG--ITVSGGEALLQIDFLIALFTKAKEKGIHCTLDT 115 >gi|229155743|ref|ZP_04283849.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC 4342] gi|228627729|gb|EEK84450.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC 4342] Length = 337 Score = 41.5 bits (97), Expect = 0.063, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D F+ + D++ L G + R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGADYAFLQEEC----LLTFDEIERLARLFISMGVNKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 GEPLL+ D+P LI+ L K G + I + TNG Sbjct: 75 GEPLLRKDLPKLIERLAKLEGIKDIGLTTNG 105 >gi|146304904|ref|YP_001192220.1| radical SAM domain-containing protein [Metallosphaera sedula DSM 5348] gi|145703154|gb|ABP96296.1| Radical SAM domain protein [Metallosphaera sedula DSM 5348] Length = 343 Score = 41.5 bits (97), Expect = 0.063, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 10/81 (12%) Query: 47 CRFCDTD--FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102 C +C G Y V +L D I E + +TGG+PLL +D V Sbjct: 43 CYYCPVSEGRFGKDSAYANEYRVKELQDFIYESYRMNALGAG---ITGGDPLLHLDRVVE 99 Query: 103 LIQALNK---RGFEIAVETNG 120 LI L R + I + T G Sbjct: 100 LITLLKDEFGRSYHIHLYTTG 120 >gi|301055055|ref|YP_003793266.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis CI] gi|300377224|gb|ADK06128.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus biovar anthracis str. CI] Length = 338 Score = 41.5 bits (97), Expect = 0.063, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D + + + + D++ + G ++ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGPD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P LI+ LNK G E I + TNG++ D + VS Sbjct: 75 GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFASDLYKAGLSRVTVS 126 >gi|317052492|ref|YP_004113608.1| Radical SAM domain-containing protein [Desulfurispirillum indicum S5] gi|316947576|gb|ADU67052.1| Radical SAM domain protein [Desulfurispirillum indicum S5] Length = 352 Score = 41.5 bits (97), Expect = 0.063, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 17/90 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR C +D + +++D A +E E VL+ Sbjct: 16 CNLSC--------IHCR-CSSD------MEKDLFHLDT-ARALELVDRIAEFCTPVFVLS 59 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 GGEPL++ D+ + + + +GF + + TNG Sbjct: 60 GGEPLMRDDLFEIARHADSKGFRVCIATNG 89 >gi|260598126|ref|YP_003210697.1| putative pyruvate formate-lyase 3-activating enzyme [Cronobacter turicensis z3032] gi|260217303|emb|CBA31273.1| Putative pyruvate formate-lyase 3-activating enzyme [Cronobacter turicensis z3032] Length = 305 Score = 41.5 bits (97), Expect = 0.063, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G +V+ + + + + G L+GGEP +Q ++ L+Q + G AVE+ Sbjct: 107 GESRSVESIMETVLRDRPFYARSGGGITLSGGEPFMQPEMAKALLQRSREAGIHTAVES 165 >gi|239625860|ref|ZP_04668891.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520090|gb|EEQ59956.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 353 Score = 41.5 bits (97), Expect = 0.063, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 14/104 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +CR+C + R + L ++ +TGGEPL++ D Sbjct: 18 DRCNLRCRYC----MPNGVESLARSEILSLEEIEAIAICAASLGISRIKVTGGEPLVRRD 73 Query: 101 -VPLIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134 L++ L G E + + TNG + GID I +S Sbjct: 74 CCQLVKLLKSIPGIEKVTITTNGVLLDRYLEPLIEAGIDGINIS 117 >gi|229099885|ref|ZP_04230808.1| Radical SAM domain protein [Bacillus cereus Rock3-29] gi|229118948|ref|ZP_04248293.1| Radical SAM domain protein [Bacillus cereus Rock1-3] gi|228664473|gb|EEL19969.1| Radical SAM domain protein [Bacillus cereus Rock1-3] gi|228683500|gb|EEL37455.1| Radical SAM domain protein [Bacillus cereus Rock3-29] Length = 238 Score = 41.5 bits (97), Expect = 0.063, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Query: 93 GEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL + L+ +++GF++ + TNGT+ Sbjct: 3 GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 33 >gi|261405912|ref|YP_003242153.1| pyruvate formate-lyase activating enzyme [Paenibacillus sp. Y412MC10] gi|261282375|gb|ACX64346.1| pyruvate formate-lyase activating enzyme [Paenibacillus sp. Y412MC10] Length = 241 Score = 41.5 bits (97), Expect = 0.063, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 51/154 (33%), Gaps = 44/154 (28%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F T+ G G RF GC +C++C DT Sbjct: 10 ETFGTVDGPG---------IRFVLFMQGC-----------LLKCQYCHNPDT----WGLH 45 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-----GFEIA 115 +G VD + IE G ++GGEP LQ P + L K Sbjct: 46 EGHEMTVDDVLREIEPYLSYYRSSGGGLTVSGGEPTLQ--YPFVTELFKEVKRRWNLHTT 103 Query: 116 VETNGTIEPP------QGIDWICVSPKAGCDLKI 143 +++NG EP + D + + K D K Sbjct: 104 LDSNGYNEPDKISELLEHTDLVLLDLKHINDEKH 137 >gi|75676452|ref|YP_318873.1| Fe-S oxidoreductase [Nitrobacter winogradskyi Nb-255] gi|74421322|gb|ABA05521.1| Fe-S oxidoreductase [Nitrobacter winogradskyi Nb-255] Length = 389 Score = 41.5 bits (97), Expect = 0.063, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 22/119 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R + + D EE + Sbjct: 38 CNL-----------GCAGCGKIDY--PDAILNRRMSAQECWDAAEECG------APMVAI 78 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ ++ +++ L R +++ TN + + +D SP + + G +E Sbjct: 79 PGGEPLIHKEIGEIVRGLVARKKFVSLCTN-ALLLEKKLDLFEPSPYLFFSVHLDGLRE 136 >gi|76802053|ref|YP_327061.1| molybdenum cofactor biosynthesis protein A [Natronomonas pharaonis DSM 2160] gi|76557918|emb|CAI49502.1| molybdenum cofactor biosynthesis protein A [Natronomonas pharaonis DSM 2160] Length = 326 Score = 41.5 bits (97), Expect = 0.063, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 23/115 (20%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + C +C DT G + D + +E + E + + TGGE Sbjct: 19 DRCNFDCVYCHNEGLGDTR--GPMEPAEDEMSTDDVIRFLE---VAAEFDIQSAKFTGGE 73 Query: 95 PLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI------------CVSPKA 137 P+L+ D+ I E ++ TNGT P + + +SPKA Sbjct: 74 PMLREDLETIVRRTPDSIETSLTTNGTFLPDRATALVDAGLERVNVSQDALSPKA 128 >gi|300869794|ref|YP_003784665.1| molybdenum cofactor biosynthesis protein A [Brachyspira pilosicoli 95/1000] gi|300687493|gb|ADK30164.1| molybdenum cofactor biosynthesis protein A [Brachyspira pilosicoli 95/1000] Length = 265 Score = 41.5 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 13/90 (14%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +C +C + + T + +Q+ ++++E G K+ R LTG Sbjct: 10 NYIRVSVTDRCNLRCVYCMPEEGIEKKTHNEILSYEQIYNVVKESAELGVKKVR---LTG 66 Query: 93 GEPL----LQVDVPLIQALNKRGFEIAVET 118 GEPL + V +I+ L +ET Sbjct: 67 GEPLVRKNIDELVAMIRTLK------NIET 90 >gi|288799635|ref|ZP_06405094.1| pyruvate formate-lyase 1-activating enzyme [Prevotella sp. oral taxon 299 str. F0039] gi|288332883|gb|EFC71362.1| pyruvate formate-lyase 1-activating enzyme [Prevotella sp. oral taxon 299 str. F0039] Length = 242 Score = 41.5 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 24/123 (19%) Query: 1 MKLYSI--KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI 57 M ++ E F ++ G G +F GC L +CR+C Sbjct: 1 MTKAAVHSVETFGSVDGPGIRFI----IF--LKGCKL-----------RCRYCHNPDTWN 43 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIA 115 +K R + L ++ + G+K G ++GGE LLQ+D + L + K G Sbjct: 44 PDSKDMRSADELLEQALKYRTYWGKKGG--ITVSGGEALLQMDFMIELFKKAKKLGIHTC 101 Query: 116 VET 118 ++T Sbjct: 102 IDT 104 >gi|224283335|ref|ZP_03646657.1| Pyruvate-formate lyase-activating enzyme [Bifidobacterium bifidum NCIMB 41171] gi|313140486|ref|ZP_07802679.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium bifidum NCIMB 41171] gi|313132996|gb|EFR50613.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium bifidum NCIMB 41171] Length = 293 Score = 41.5 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 30/135 (22%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G +D + ++ Sbjct: 71 RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGQPVYLDAMIKKVDRYK 113 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG---TIEPPQGIDWICV 133 + +GGE ++Q + A + G ++T+G T + ID I + Sbjct: 114 DLFKATHGGITFSGGESMMQPAFVSRVFHAAKEMGVHTCLDTSGFLNTNYTDEMIDDIDL 173 Query: 134 SPKAGCDLKIKGGQE 148 C L +K G E Sbjct: 174 -----CLLDVKSGDE 183 >gi|224372437|ref|YP_002606809.1| molybdenum cofactor biosynthesis protein A [Nautilia profundicola AmH] gi|254811545|sp|B9L851|MOAA_NAUPA RecName: Full=Molybdenum cofactor biosynthesis protein A gi|223589159|gb|ACM92895.1| molybdenum cofactor biosynthesis protein A [Nautilia profundicola AmH] Length = 318 Score = 41.5 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 10/85 (11%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 R + +C +C +T F RY +++ + + G + R LTGGEPLL+ Sbjct: 19 SRCNFRCLYCMPNTPFEWEPHENILRY--EEMFEFLRLAIDEGINKIR---LTGGEPLLR 73 Query: 99 VDVP-LIQALNK--RGFEIAVETNG 120 D+ ++ L+ ++A+ TNG Sbjct: 74 KDLDVFVKMLHDYRPDLDLALTTNG 98 >gi|149187459|ref|ZP_01865757.1| putative pyruvate formate-lyase activating enzyme [Vibrio shilonii AK1] gi|148838995|gb|EDL55934.1| putative pyruvate formate-lyase activating enzyme [Vibrio shilonii AK1] Length = 316 Score = 41.5 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 G V+Q+ + + + +K G L+GGE L Q + + L + + VETN Sbjct: 119 GKEMTVEQVFAEVIKDKVYFDKSGGGITLSGGEALKQFEFCLALAKMCKANDVHVCVETN 178 Query: 120 GT 121 G Sbjct: 179 GA 180 >gi|126652323|ref|ZP_01724499.1| molybdenum cofactor biosynthesis protein A [Bacillus sp. B14905] gi|126590898|gb|EAZ85011.1| molybdenum cofactor biosynthesis protein A [Bacillus sp. B14905] Length = 308 Score = 41.5 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 8/73 (10%) Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-R 110 D+ + K + D++ L++ G K+ R +TGGEPLL+ D+ LI +++ Sbjct: 9 DYAFLPSDKILNF--DEIERLVKIFVSLGVKKVR---ITGGEPLLRRDLTELIARIHRLE 63 Query: 111 GFE-IAVETNGTI 122 G E IA+ TNGT+ Sbjct: 64 GVEDIALTTNGTL 76 >gi|126697727|ref|YP_001086624.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile 630] gi|122974232|sp|Q18CP3|HPDA_CLOD6 RecName: Full=4-hydroxyphenylacetate decarboxylase activating enzyme; Short=Hpd-AE gi|115249164|emb|CAJ66975.1| putative 4-hydroxyphenylacetate decarboxylase,activating subunit HpdA; putative glycyl-radical activating family protein [Clostridium difficile] Length = 316 Score = 41.5 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 Y VD+L +I+ + +GGEPLLQ + ++ ++ A+ET+ Sbjct: 117 YTVDELVQVIKRD-SNNWRSNGGVTFSGGEPLLQHEFLHEVLLKCHEVNIHTAIETS 172 >gi|317471719|ref|ZP_07931060.1| glycyl-radical enzyme activating protein family [Anaerostipes sp. 3_2_56FAA] gi|316900823|gb|EFV22796.1| glycyl-radical enzyme activating protein family [Anaerostipes sp. 3_2_56FAA] Length = 304 Score = 41.5 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 9/144 (6%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117 ++G V ++ +++ + E+ G L+GGE L Q + L+ A + G E Sbjct: 107 SEGETKTVQEVLNVVLQDKDFYEESGGGITLSGGEFLSQPEFAAELLLASKENGLHTCCE 166 Query: 118 TNGTIEPP------QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE-NYIGFDFER 170 T G +P + +D+I K K K G + P N+ R Sbjct: 167 TTGFADPEIFNGVIKHLDYILFDMKHWNTAKHKEGTGVSNDLPLFNMKHAIQAEKEVLPR 226 Query: 171 FSLQPMDGPFLEENTNLAISYCFQ 194 + P LE+ LA + Sbjct: 227 IPVIPGFNDSLEDAARLADTLLKA 250 >gi|296166708|ref|ZP_06849133.1| radical SAM domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897973|gb|EFG77554.1| radical SAM domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 516 Score = 41.5 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 16/91 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C F V + ++++ +L+ Sbjct: 123 CNL-----------RCPTC---FADSSPDLRDVVAVGDVLANVDQRLARENGRLDVVMLS 168 Query: 92 GGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120 GGEP L +P L+ L+ R I + TNG Sbjct: 169 GGEPTLHPQLPELLAELSSRPITRILLNTNG 199 >gi|218781694|ref|YP_002433012.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01] gi|218763078|gb|ACL05544.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01] Length = 394 Score = 41.5 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 8/92 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 + R + +C C + G +Q +LI++ E + + Sbjct: 40 PVVVWNATRRCNLKCVHC---YAHATAGKAPVEMTTEQGKELIKDL---AEFGSPVMLFS 93 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GGEPL++ D+P L + G + TNGT+ Sbjct: 94 GGEPLMREDLPELADFAVQNGMRAVISTNGTL 125 >gi|219849365|ref|YP_002463798.1| molybdenum cofactor biosynthesis protein A [Chloroflexus aggregans DSM 9485] gi|219543624|gb|ACL25362.1| molybdenum cofactor biosynthesis protein A [Chloroflexus aggregans DSM 9485] Length = 353 Score = 41.5 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 55/140 (39%), Gaps = 26/140 (18%) Query: 41 DRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-Q 98 DR + +C +C VG+Q + D+L +I G ++ R LTGGEP L Sbjct: 46 DRCNMRCVYC-MPAVGMQFAPRPELLTNDELLLVISAAARAGFRKLR---LTGGEPTLRH 101 Query: 99 VDVPLIQALNK-RGFE-IAVETN--------------GTIEPPQGIDWICVSPKAGCDLK 142 V L++ L + G E IA+ TN G ID + P + Sbjct: 102 DLVNLVRELKRIPGIEHIAMTTNALRLRKLAQSLREAGLDRVNISID--TLDP-VKFRMM 158 Query: 143 IKGGQELKLVFPQVNVSPEN 162 +GG L V+ + + Sbjct: 159 TRGGN-LDEVWAGIEAADAA 177 >gi|77917841|ref|YP_355656.1| Fe-S oxidoreductase [Pelobacter carbinolicus DSM 2380] gi|77543924|gb|ABA87486.1| conserved hypothetical Fe-S oxidoreductase [Pelobacter carbinolicus DSM 2380] Length = 459 Score = 41.5 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 14/103 (13%) Query: 31 GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G + C C F ++ + ++ Sbjct: 69 GCPYDCGLCSNHGQHTCSALLEITERCNMACPVCFADSGKNAAADPTLETIDGWLQAVGR 128 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120 E L+GGEP ++ D+P +I+ + +RGF + + TNG Sbjct: 129 ASGFEI-VIQLSGGEPTVREDLPEIIRRVRQRGFGFVQINTNG 170 >gi|75907442|ref|YP_321738.1| radical SAM family protein [Anabaena variabilis ATCC 29413] gi|75701167|gb|ABA20843.1| Radical SAM [Anabaena variabilis ATCC 29413] Length = 338 Score = 41.5 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 28/122 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA--DLIEEQWITG--EKEGRY 87 CNL C C G + ++ +L EQ E Sbjct: 38 CNL-----------ACSGC-----------GKIQHPTEILKQNLTPEQCFAAVDECGAPV 75 Query: 88 CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146 + GGEPLL + +++ L +R + + TNG + + +D SP + + G Sbjct: 76 VSIPGGEPLLHPQIDEIVRGLVERKKYVYLCTNG-LLLEKSLDKFQPSPYLTFSVHLDGL 134 Query: 147 QE 148 +E Sbjct: 135 RE 136 >gi|30248346|ref|NP_840416.1| MoaA/nifB/pqqE family protein [Nitrosomonas europaea ATCC 19718] gi|30138232|emb|CAD84240.1| MoaA / nifB / pqqE family [Nitrosomonas europaea ATCC 19718] Length = 387 Score = 41.5 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C + T R +VD+ ++E + Sbjct: 38 CNLAC--------AGCG----KIDYPEETLRRRLSVDECLHAVDECG------APVVSIA 79 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ ++P ++Q + +R + + TN + +D SP + + G +E Sbjct: 80 GGEPLIHKEMPQIVQGIIQRKKFVYLCTN-ALLLDTRMDDYQPSPYLTFSIHLDGNRE 136 >gi|85860740|ref|YP_462942.1| molybdenum cofactor biosynthesis protein A [Syntrophus aciditrophicus SB] gi|85723831|gb|ABC78774.1| molybdenum cofactor biosynthesis protein A [Syntrophus aciditrophicus SB] Length = 345 Score = 41.5 bits (97), Expect = 0.065, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 5/96 (5%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +CR+C GI+ G V L + + R LTG Sbjct: 29 NYLRISVTDRCNLRCRYC-MPEEGIESKLGHE-GVLSLEAFARVVRLAAQVGIRKVRLTG 86 Query: 93 GEPLLQVDVP-LIQALNKRGF--EIAVETNGTIEPP 125 GEPL++ ++P LI+ + +IA+ TNG + P Sbjct: 87 GEPLVRRNIPQLIRYIADVPQIDDIALTTNGILFAP 122 >gi|15678315|ref|NP_275430.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanothermobacter thermautotrophicus str. Delta H] gi|2621339|gb|AAB84793.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 237 Score = 41.5 bits (97), Expect = 0.065, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 18/88 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 F GC +CR C + G +L D+I + E Sbjct: 61 FQGCP-----------IRCRGC-LNPEFHDEDGGHLIETARLVDMIRDLRDEIEG----V 104 Query: 89 VLTGGEPLLQV--DVPLIQALNKRGFEI 114 TGGEPL Q V L A+ G + Sbjct: 105 TFTGGEPLAQAMELVKLAGAVKSMGLTV 132 >gi|327399325|ref|YP_004340194.1| Radical SAM domain-containing protein [Hippea maritima DSM 10411] gi|327181954|gb|AEA34135.1| Radical SAM domain protein [Hippea maritima DSM 10411] Length = 319 Score = 41.5 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 17/134 (12%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDV- 101 S +C +C+ + + +L + + I + + +G GEP L D+ Sbjct: 28 SYRCIYCEVGKTTDLSIERKSFFEVELIEKEFKDNIGKLGKIDFVTFSGSGEPTLNKDIG 87 Query: 102 PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE 161 LI + G+ AV TNG++ + + + +V P ++ + E Sbjct: 88 RLIDFVKGFGYRTAVLTNGSLLWREDV-----------KRDLLRAD---IVIPSLDAADE 133 Query: 162 N-YIGFDFERFSLQ 174 + + + SL Sbjct: 134 DSFKKINRPHPSLS 147 >gi|309774977|ref|ZP_07669994.1| putative pyruvate formate-lyase-activating enzyme [Erysipelotrichaceae bacterium 3_1_53] gi|308917254|gb|EFP62977.1| putative pyruvate formate-lyase-activating enzyme [Erysipelotrichaceae bacterium 3_1_53] Length = 301 Score = 41.5 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 47/149 (31%), Gaps = 49/149 (32%) Query: 22 RVAVFCRFSGCNLWSGREQDRLS--------------AQCRFC-----DTDFVGIQGTKG 62 R VF GCNL + +C+ C DT ++ Sbjct: 21 RSTVF--LIGCNLRCVWCSNPELMLPGDKLLHFSSLCRKCQSCVRAYPDTVYMQDGELHM 78 Query: 63 GR------------------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 + + L + + + I E+ +GGEPLLQ Sbjct: 79 HKTAQLHSCELEEICPYDALEHTGMQVDPVTLVEQLLKDRIFYEESAGGVTFSGGEPLLQ 138 Query: 99 VDVPLIQA---LNKRGFEIAVETNGTIEP 124 + L A L ++G + V+T G +E Sbjct: 139 AE-ALYDALYLLKQKGISVCVDTAGDVEW 166 >gi|228900763|ref|ZP_04064979.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis IBL 4222] gi|228858863|gb|EEN03307.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis IBL 4222] Length = 333 Score = 41.5 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + +Q D++ L G + R LTG Sbjct: 18 DRCNFRCTYCMPAEVFGPD--YAFLQEEL--LLTFDEIERLARLFISLGVNKIR---LTG 70 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 GEPLL+ D+P LI L K G + I + TNG Sbjct: 71 GEPLLRKDLPMLIARLAKLEGLKDIGLTTNG 101 >gi|228965137|ref|ZP_04126233.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar sotto str. T04001] gi|228794570|gb|EEM42080.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar sotto str. T04001] Length = 333 Score = 41.5 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + +Q D++ L G + R LTG Sbjct: 18 DRCNFRCTYCMPAEVFGPD--YAFLQEEL--LLTFDEIERLARLFISLGVNKIR---LTG 70 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 GEPLL+ D+P LI L K G + I + TNG Sbjct: 71 GEPLLRKDLPMLIARLAKLEGLKDIGLTTNG 101 >gi|228985250|ref|ZP_04145415.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774545|gb|EEM22946.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 337 Score = 41.5 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 14/89 (15%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D+ +Q D++ L G + R LTGGE Sbjct: 22 DRCNFRCTYCMPAEVFGADYAFLQEEF--LLTFDEIERLARLFISMGVNKIR---LTGGE 76 Query: 95 PLLQVDVP-LIQALNK-RGFE-IAVETNG 120 PLL+ D+P LI+ L K G + I + TNG Sbjct: 77 PLLRKDLPKLIERLAKIEGIKDIGLTTNG 105 >gi|255305100|ref|ZP_05349272.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile ATCC 43255] Length = 316 Score = 41.5 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 Y VD+L +I+ + +GGEPLLQ + ++ ++ A+ET+ Sbjct: 117 YTVDELVQVIKRD-SNNWRSNGGVTFSGGEPLLQHEFLHEVLLKCHEVNIHTAIETS 172 >gi|156935145|ref|YP_001439061.1| pyrroloquinoline quinone biosynthesis protein PqqE [Cronobacter sakazakii ATCC BAA-894] gi|156533399|gb|ABU78225.1| hypothetical protein ESA_02996 [Cronobacter sakazakii ATCC BAA-894] Length = 378 Score = 41.5 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF + +Q D+ + G + + Sbjct: 10 PLWLLAELTYRCPLQCPYCSNPLDFAAQE----NELTTEQWIDVFRQARAMGAVQLGF-- 63 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL++ D+P LI A GF + T+G Sbjct: 64 -SGGEPLVRKDLPELIAAARGMGFYTNLITSG 94 >gi|148225025|ref|NP_001086201.1| molybdenum cofactor synthesis 1 [Xenopus laevis] gi|49258030|gb|AAH74319.1| MGC84142 protein [Xenopus laevis] Length = 389 Score = 41.5 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 21/134 (15%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGT-KGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 N ++ + +C++C G++ T K ++ L + G + R LT Sbjct: 74 NYLRISVTEKCNLRCQYC-MPEEGVKLTPKSELLTTQEIVTLAKLFVREGVDKIR---LT 129 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG---TIEPP----QGIDWICVS------P 135 GGEPL++ D V ++ L K G + IA+ TNG T + P G+D + +S P Sbjct: 130 GGEPLIRPDVVDIVAQLRKLEGLKTIALTTNGINLTRQLPKLKDAGLDVLNISLDTLVPP 189 Query: 136 KAGCDLKIKGGQEL 149 K ++ KG ++ Sbjct: 190 KFEFIVRRKGFHKV 203 >gi|75764213|ref|ZP_00743774.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218897135|ref|YP_002445546.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus G9842] gi|74488299|gb|EAO51954.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218543554|gb|ACK95948.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus G9842] Length = 337 Score = 41.5 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + +Q D++ L G + R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPD--YAFLQEEL--LLTFDEIERLARLFISLGVNKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 GEPLL+ D+P LI L K G + I + TNG Sbjct: 75 GEPLLRKDLPMLIARLAKLEGLKDIGLTTNG 105 >gi|256395785|ref|YP_003117349.1| hopanoid biosynthesis associated radical SAM protein HpnH [Catenulispora acidiphila DSM 44928] gi|256362011|gb|ACU75508.1| hopanoid biosynthesis associated radical SAM protein HpnH [Catenulispora acidiphila DSM 44928] Length = 334 Score = 41.5 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 20/99 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C R V+Q + E + Sbjct: 38 CNLAC--------AGCG----KIQHPADVLKKRMPVEQALAAMRECG------APMVSIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGID 129 GGEPL+ + L+ L K + + TN + P+ +D Sbjct: 80 GGEPLMHPQIGELVDELVKMKRYVFLCTN-ALLIPKKLD 117 >gi|237813219|ref|YP_002897670.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei MSHR346] gi|237506155|gb|ACQ98473.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei MSHR346] Length = 377 Score = 41.5 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 23/113 (20%) Query: 41 DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 DR + +C +C ++++ L G ++ R +TGGEP Sbjct: 52 DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 107 Query: 96 LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 LL+ ++ LI+ L R +I + TNG++ G+ + VS Sbjct: 108 LLRKNLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVS 160 >gi|167903657|ref|ZP_02490862.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei NCTC 13177] Length = 370 Score = 41.5 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 23/113 (20%) Query: 41 DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 DR + +C +C ++++ L G ++ R +TGGEP Sbjct: 45 DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 100 Query: 96 LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 LL+ ++ LI+ L R +I + TNG++ G+ + VS Sbjct: 101 LLRKNLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVS 153 >gi|162446916|ref|YP_001620048.1| pyruvate formate lyase activating enzyme [Acholeplasma laidlawii PG-8A] gi|161985023|gb|ABX80672.1| pyruvate formate lyase activating enzyme [Acholeplasma laidlawii PG-8A] Length = 253 Score = 41.5 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 23/100 (23%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 GC L +C+FC DT V+++ + + + Sbjct: 33 LQGCPL-----------RCKFCHNRDT----WGTEDNKLMTVEEILN--DYNKYRAFYKK 75 Query: 86 RYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN-GTI 122 ++GGE LQ+ L + R ++T+ GT Sbjct: 76 GGLTVSGGEATLQIGFLTALFKEAKNRNIHTCLDTSAGTF 115 >gi|167720586|ref|ZP_02403822.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei DM98] gi|167739576|ref|ZP_02412350.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 14] gi|167816780|ref|ZP_02448460.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 91] gi|167825186|ref|ZP_02456657.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 9] gi|167846683|ref|ZP_02472191.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei B7210] gi|167895272|ref|ZP_02482674.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 7894] gi|167911906|ref|ZP_02498997.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 112] gi|167919900|ref|ZP_02506991.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei BCC215] gi|254191222|ref|ZP_04897726.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei Pasteur 52237] gi|254195839|ref|ZP_04902265.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei S13] gi|157938894|gb|EDO94564.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei Pasteur 52237] gi|169652584|gb|EDS85277.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei S13] Length = 370 Score = 41.5 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 23/113 (20%) Query: 41 DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 DR + +C +C ++++ L G ++ R +TGGEP Sbjct: 45 DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 100 Query: 96 LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 LL+ ++ LI+ L R +I + TNG++ G+ + VS Sbjct: 101 LLRKNLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVS 153 >gi|134277196|ref|ZP_01763911.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 305] gi|134250846|gb|EBA50925.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 305] Length = 377 Score = 41.5 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 23/113 (20%) Query: 41 DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 DR + +C +C ++++ L G ++ R +TGGEP Sbjct: 52 DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 107 Query: 96 LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 LL+ ++ LI+ L R +I + TNG++ G+ + VS Sbjct: 108 LLRKNLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVS 160 >gi|126454258|ref|YP_001067111.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 1106a] gi|217420454|ref|ZP_03451959.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 576] gi|226197916|ref|ZP_03793490.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei Pakistan 9] gi|254259569|ref|ZP_04950623.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 1710a] gi|126227900|gb|ABN91440.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 1106a] gi|217395866|gb|EEC35883.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 576] gi|225930104|gb|EEH26117.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei Pakistan 9] gi|254218258|gb|EET07642.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 1710a] Length = 377 Score = 41.5 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 23/113 (20%) Query: 41 DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 DR + +C +C ++++ L G ++ R +TGGEP Sbjct: 52 DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 107 Query: 96 LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 LL+ ++ LI+ L R +I + TNG++ G+ + VS Sbjct: 108 LLRKNLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVS 160 >gi|126441374|ref|YP_001059824.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 668] gi|126220867|gb|ABN84373.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 668] Length = 377 Score = 41.5 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 23/113 (20%) Query: 41 DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 DR + +C +C ++++ L G ++ R +TGGEP Sbjct: 52 DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 107 Query: 96 LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 LL+ ++ LI+ L R +I + TNG++ G+ + VS Sbjct: 108 LLRKNLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVS 160 >gi|121598421|ref|YP_993796.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei SAVP1] gi|124385812|ref|YP_001028740.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei NCTC 10229] gi|126451180|ref|YP_001081354.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei NCTC 10247] gi|242314341|ref|ZP_04813357.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 1106b] gi|251767263|ref|ZP_02266560.2| molybdenum cofactor biosynthesis protein A [Burkholderia mallei PRL-20] gi|254178129|ref|ZP_04884784.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei ATCC 10399] gi|254357683|ref|ZP_04973956.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei 2002721280] gi|121227231|gb|ABM49749.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei SAVP1] gi|124293832|gb|ABN03101.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei NCTC 10229] gi|126244050|gb|ABO07143.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei NCTC 10247] gi|148026810|gb|EDK84831.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei 2002721280] gi|160699168|gb|EDP89138.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei ATCC 10399] gi|242137580|gb|EES23982.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 1106b] gi|243063305|gb|EES45491.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei PRL-20] Length = 363 Score = 41.5 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 23/113 (20%) Query: 41 DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 DR + +C +C ++++ L G ++ R +TGGEP Sbjct: 38 DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 93 Query: 96 LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 LL+ ++ LI+ L R +I + TNG++ G+ + VS Sbjct: 94 LLRKNLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVS 146 >gi|76809653|ref|YP_334300.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 1710b] gi|76579106|gb|ABA48581.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 1710b] Length = 370 Score = 41.5 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 23/113 (20%) Query: 41 DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 DR + +C +C ++++ L G ++ R +TGGEP Sbjct: 45 DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 100 Query: 96 LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 LL+ ++ LI+ L R +I + TNG++ G+ + VS Sbjct: 101 LLRKNLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVS 153 >gi|84496509|ref|ZP_00995363.1| molybdenum cofactor biosynthesis protein A [Janibacter sp. HTCC2649] gi|84383277|gb|EAP99158.1| molybdenum cofactor biosynthesis protein A [Janibacter sp. HTCC2649] Length = 336 Score = 41.5 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 55/138 (39%), Gaps = 22/138 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99 DR + +CR+C K D+L L+ G ++ R LTGGEPLL+ Sbjct: 27 DRCNLRCRYCMPAEGLPWLAKPEMLTDDELIRLVSIFVALGVEQVR---LTGGEPLLRRS 83 Query: 100 DVPL---IQALNKRGFEIAVETNG-TIE------PPQGIDWI-----CVSPKAGCDLKIK 144 L I AL R IA+ TNG ++ G+D + V PK DL Sbjct: 84 LTDLVGRIAALTPRP-RIAMTTNGIGLDRLAGPLAAAGLDRVNISLDTVDPKEFADL--T 140 Query: 145 GGQELKLVFPQVNVSPEN 162 LK V + + E Sbjct: 141 RRDRLKDVEAGLEAAREA 158 >gi|53720059|ref|YP_109045.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei K96243] gi|53725728|ref|YP_102316.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei ATCC 23344] gi|254199210|ref|ZP_04905576.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei FMH] gi|254205515|ref|ZP_04911867.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei JHU] gi|254296849|ref|ZP_04964302.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 406e] gi|52210473|emb|CAH36456.1| putative molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei K96243] gi|52429151|gb|AAU49744.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei ATCC 23344] gi|147748806|gb|EDK55880.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei FMH] gi|147752958|gb|EDK60023.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei JHU] gi|157807170|gb|EDO84340.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 406e] Length = 360 Score = 41.5 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 23/113 (20%) Query: 41 DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 DR + +C +C ++++ L G ++ R +TGGEP Sbjct: 35 DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 90 Query: 96 LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 LL+ ++ LI+ L R +I + TNG++ G+ + VS Sbjct: 91 LLRKNLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVS 143 >gi|327314094|ref|YP_004329531.1| pyruvate formate-lyase 1-activating enzyme [Prevotella denticola F0289] gi|326945639|gb|AEA21524.1| pyruvate formate-lyase 1-activating enzyme [Prevotella denticola F0289] Length = 246 Score = 41.5 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 34/127 (26%) Query: 3 LYSI--KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVG 56 + + E F ++ G G +F GC + +CR+C DT Sbjct: 7 MLRVHSVESFGSVDGPGIRFV----IF--LKGC-----------AMRCRYCHNPDT---- 45 Query: 57 IQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR---GF 112 G +VD L+ + Q GEK G ++GGE LLQ PL + +K G Sbjct: 46 WDRAGGILRSVDDVLSQALRYQSYWGEKGG--ITVSGGEALLQ-LRPLTELFHKAKSLGV 102 Query: 113 EIAVETN 119 ++T+ Sbjct: 103 NTCLDTS 109 >gi|319762446|ref|YP_004126383.1| molybdenum cofactor biosynthesis protein a [Alicycliphilus denitrificans BC] gi|330825703|ref|YP_004389006.1| molybdenum cofactor biosynthesis protein A [Alicycliphilus denitrificans K601] gi|317117007|gb|ADU99495.1| molybdenum cofactor biosynthesis protein A [Alicycliphilus denitrificans BC] gi|329311075|gb|AEB85490.1| molybdenum cofactor biosynthesis protein A [Alicycliphilus denitrificans K601] Length = 389 Score = 41.5 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 19/150 (12%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C V + + ++ + ++ + LTGGEPLL+ Sbjct: 58 DRCNFRCSYCMPKEVFDKHYRYLPHSDLLSFEEITRLARLFMAHGVHKIRLTGGEPLLRK 117 Query: 100 DVPLI-QALNKRGFE--------IAVETNGT-------IEPPQGIDWICVSPKAGCDLKI 143 D+ L+ + L G + + TNG+ G+ + VS + D Sbjct: 118 DLELLVEQL--AGLRTTEGRVPDLTLTTNGSLLARKARALKAAGLQRVTVSLDSLDDAVF 175 Query: 144 KGGQELKLVFPQVNVSPENYIGFDFERFSL 173 + ++ +V E F + Sbjct: 176 RRMNDVDFPVAEVLAGIEAAQAAGFGTIKV 205 >gi|293364736|ref|ZP_06611453.1| pyruvate formate-lyase activating enzyme [Streptococcus oralis ATCC 35037] gi|306830171|ref|ZP_07463355.1| pyruvate formate-lyase activating enzyme [Streptococcus mitis ATCC 6249] gi|307702983|ref|ZP_07639930.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus oralis ATCC 35037] gi|322375831|ref|ZP_08050342.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sp. C300] gi|331265653|ref|YP_004325283.1| pyruvate-formate lyase activating enzyme [Streptococcus oralis Uo5] gi|291316186|gb|EFE56622.1| pyruvate formate-lyase activating enzyme [Streptococcus oralis ATCC 35037] gi|304427697|gb|EFM30793.1| pyruvate formate-lyase activating enzyme [Streptococcus mitis ATCC 6249] gi|307623376|gb|EFO02366.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus oralis ATCC 35037] gi|321279099|gb|EFX56141.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sp. C300] gi|326682325|emb|CBY99942.1| pyruvate-formate lyase activating enzyme [Streptococcus oralis Uo5] Length = 264 Score = 41.5 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 21/99 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC++ +C++C DT + R D L + + + G Sbjct: 33 VF--LQGCHM-----------RCQYCHNPDT-WAMETNKSRERTVDDVLTEALRYRGFWG 78 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 +K G ++GGE LLQ+D + L ++G ++T Sbjct: 79 DKGG--ITVSGGEALLQIDFLIALFTKAKEKGIHCTLDT 115 >gi|238059634|ref|ZP_04604343.1| radical activating enzyme [Micromonospora sp. ATCC 39149] gi|237881445|gb|EEP70273.1| radical activating enzyme [Micromonospora sp. ATCC 39149] Length = 214 Score = 41.5 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 27/100 (27%), Gaps = 28/100 (28%) Query: 17 GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADL 73 G G GC + C C DT F VD + D Sbjct: 18 GRRVGVW-----LQGC-----------AIGCPGCVSQDTWFA----EPRHDTEVDDVLDR 57 Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRG 111 + G +TGGEP Q L+ L G Sbjct: 58 VAGLDPAGITG---VTVTGGEPSEQPEALAALVTGLAGLG 94 >gi|189219248|ref|YP_001939889.1| pyrroloquinoline quinone biosynthesis protein PqqE [Methylacidiphilum infernorum V4] gi|189186106|gb|ACD83291.1| Coenzyme PQQ synthesis protein E, radical SAM superfamily enzyme [Methylacidiphilum infernorum V4] Length = 386 Score = 41.5 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 5/77 (6%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105 C +C ++ + ++ +++E G + +GGEPL++ D+ LI+ Sbjct: 36 CPYC-SNSTSYLHWLKKELSTEEWIRVLKEAQKLGILQ---VYFSGGEPLVRKDLITLIR 91 Query: 106 ALNKRGFEIAVETNGTI 122 + GF + T GT+ Sbjct: 92 TAHDLGFYSNMSTGGTL 108 >gi|52548443|gb|AAU82292.1| pyruvate-formate lyase-activating enzyme [uncultured archaeon GZfos13E1] Length = 666 Score = 41.5 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 13/93 (13%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRY-----CVLTGGEPLLQVDV-PLIQALNKRGFEI 114 + Q ++LI E+ I E R +TGGEP LQ D+ + L K + + Sbjct: 470 NPELVDPKQFSNLISEKKIFSFLEERRGKLDAVEITGGEPTLQPDLIDFMCDLKKLDYLV 529 Query: 115 AVETNGTIE--PPQGI-----DWICVSPKAGCD 140 +++NG+ + I D+I + KA + Sbjct: 530 KLDSNGSKPEILSEAIEHEIVDYIAMDVKAPLE 562 >gi|254787180|ref|YP_003074609.1| hopanoid biosynthesis associated radical SAM protein HpnH [Teredinibacter turnerae T7901] gi|237687254|gb|ACR14518.1| hopanoid biosynthesis associated radical SAM protein HpnH [Teredinibacter turnerae T7901] Length = 372 Score = 41.5 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 86 RYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144 + GGEPL+ ++P LI + R + + TN + + ID SP + + Sbjct: 74 PIVSIPGGEPLIHREMPELIAGIVARKKYVYLCTN-ALLLEKHIDKYTPSPYLTFSIHLD 132 Query: 145 G 145 G Sbjct: 133 G 133 >gi|310287704|ref|YP_003938962.1| Pyruvate formate-lyase activating enzyme [Bifidobacterium bifidum S17] gi|309251640|gb|ADO53388.1| Pyruvate formate-lyase activating enzyme [Bifidobacterium bifidum S17] Length = 293 Score = 41.5 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 30/135 (22%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G +D + ++ Sbjct: 71 RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGQPVYLDAMIKKVDRYK 113 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG---TIEPPQGIDWICV 133 + +GGE ++Q + A + G ++T+G T + ID I + Sbjct: 114 DLFKATHGGITFSGGESMMQPAFVSRVFHAAKEMGVHTCLDTSGFLNTNYTDEMIDDIDL 173 Query: 134 SPKAGCDLKIKGGQE 148 C L +K G E Sbjct: 174 -----CLLDVKSGDE 183 >gi|254973814|ref|ZP_05270286.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile QCD-66c26] gi|255091201|ref|ZP_05320679.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile CIP 107932] gi|255312858|ref|ZP_05354441.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile QCD-76w55] gi|255515617|ref|ZP_05383293.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile QCD-97b34] gi|255648711|ref|ZP_05395613.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile QCD-37x79] gi|306518831|ref|ZP_07405178.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile QCD-32g58] gi|317411750|sp|C9YHW3|HPDA_CLODR RecName: Full=4-hydroxyphenylacetate decarboxylase activating enzyme; Short=Hpd-AE gi|317411752|sp|C9XIS7|HPDA_CLODC RecName: Full=4-hydroxyphenylacetate decarboxylase activating enzyme; Short=Hpd-AE Length = 316 Score = 41.5 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 Y VD+L +I+ + +GGEPLLQ + ++ ++ A+ET+ Sbjct: 117 YTVDELVQVIKRD-SNNWRSNGGVTFSGGEPLLQHEFLHEVLLKCHEVNIHTAIETS 172 >gi|209963664|ref|YP_002296579.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Rhodospirillum centenum SW] gi|209957130|gb|ACI97766.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Rhodospirillum centenum SW] Length = 217 Score = 41.5 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 41/126 (32%), Gaps = 30/126 (23%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 VFC GC C +C D + +Q+ +E + Sbjct: 22 VATVFC--QGCP-----------WACPYCHNPD----LLPARGQRELAWEQVLAFLEGRR 64 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132 + V +GGE LQ +P ++ + GF I + T G +DW+ Sbjct: 65 GLLDG----VVFSGGEATLQAALPDAMRTVRGMGFRIGLHTGGPYPERLADLLPLLDWVG 120 Query: 133 VSPKAG 138 KA Sbjct: 121 FDVKAP 126 >gi|226946196|ref|YP_002801269.1| pyrroloquinoline quinone biosynthesis protein PqqE [Azotobacter vinelandii DJ] gi|259534381|sp|C1DEW5|PQQE_AZOVD RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|226721123|gb|ACO80294.1| coenzyme PQQ biosynthesis E [Azotobacter vinelandii DJ] Length = 383 Score = 41.5 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 19/114 (16%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF G + + ++ + G + + Sbjct: 14 PLWLLAELTYRCPLQCPYCSNPLDFAR----HGAELSTAEWIEVFRQARELGAAQLGF-- 67 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134 +GGEPL+ Q LI A G+ + T+G G+D I VS Sbjct: 68 -SGGEPLVRQDLSELIGAARGLGYYTNLITSGIGLSEARIAEFATAGLDHIQVS 120 >gi|311064602|ref|YP_003971327.1| pyruvate formate-lyase activating enzyme [Bifidobacterium bifidum PRL2010] gi|310866921|gb|ADP36290.1| pflA Pyruvate formate-lyase activating enzyme [Bifidobacterium bifidum PRL2010] Length = 293 Score = 41.5 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 30/135 (22%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G +D + ++ Sbjct: 71 RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGQPVYLDAMIKKVDRYK 113 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG---TIEPPQGIDWICV 133 + +GGE ++Q + A + G ++T+G T + ID I + Sbjct: 114 DLFKATHGGITFSGGESMMQPAFVSRVFHAAKEMGVHTCLDTSGFLNTNYTDEMIDDIDL 173 Query: 134 SPKAGCDLKIKGGQE 148 C L +K G E Sbjct: 174 -----CLLDVKSGDE 183 >gi|238025534|ref|YP_002909766.1| pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia glumae BGR1] gi|237880199|gb|ACR32531.1| Pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia glumae BGR1] Length = 393 Score = 41.5 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 11/95 (11%) Query: 30 SGCNLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +G LW E R QC +C DF +G + A ++ E G + Sbjct: 22 AGLPLWLLAELTYRCPLQCPYCSNPLDFAR----QGEELSTADWARVMGEARALGAAQ-- 75 Query: 87 YCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL++ D+P L+ + GF + T+G Sbjct: 76 -IGFSGGEPLVREDLPELVAEARRLGFYTNLITSG 109 >gi|218778023|ref|YP_002429341.1| glycyl-radical enzyme activating protein family [Desulfatibacillum alkenivorans AK-01] gi|218759407|gb|ACL01873.1| Pyruvate formate lyase activating enzyme [Desulfatibacillum alkenivorans AK-01] Length = 317 Score = 41.5 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119 G ++ LA +E+ E G ++GGEP LQ D L++ +G A++T Sbjct: 102 GEDRTLEDLAAELEKDRAYFESSGGGVTISGGEPALQADFAASLLRICQGKGLHTALDTC 161 Query: 120 GTIEP 124 G ++P Sbjct: 162 GMVKP 166 >gi|119872831|ref|YP_930838.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM 4184] gi|119674239|gb|ABL88495.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184] Length = 270 Score = 41.5 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 9/91 (9%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 LW + +C++C F + ++ + I + GG Sbjct: 2 LWFILTTGACNLKCKYCGGSFDNNYSPWRPKITAGEVVNFIAQ-----RDRKPIVFFYGG 56 Query: 94 EPLL--QVDVPLIQALNKRGFEIAVETNGTI 122 EPLL Q V +++AL F I TNGT Sbjct: 57 EPLLNVQYIVDVLKALPNARFGIQ--TNGTF 85 >gi|237653274|ref|YP_002889588.1| radical SAM protein [Thauera sp. MZ1T] gi|237624521|gb|ACR01211.1| Radical SAM domain protein [Thauera sp. MZ1T] Length = 402 Score = 41.5 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 6/100 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + R + C C + + G N ++ ++++ + +L+G Sbjct: 26 PVVIWNLIRRCNLTCEHCYS--ISADKDFPGELNTQEVFKVMDDLK---DARVPVLILSG 80 Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GEPLL+ D+ + + GF + + +NGT+ ID I Sbjct: 81 GEPLLRPDIFDIARRAKGMGFYVGLSSNGTLIDESNIDAI 120 >gi|222055506|ref|YP_002537868.1| radical SAM protein [Geobacter sp. FRC-32] gi|221564795|gb|ACM20767.1| Radical SAM domain protein [Geobacter sp. FRC-32] Length = 316 Score = 41.5 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 8/88 (9%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105 C+ C + + + + + LI++ + G K +LTGGEPLL + ++ Sbjct: 30 CKHC----LNKHRRENAQITLKEAEGLIDDLAVHGIKR---IILTGGEPLLFDGIFQVVN 82 Query: 106 ALNKRGFEIAVETNGTIEPPQGIDWICV 133 +G +++ TNG + +D +C Sbjct: 83 YAQAKGMTVSINTNGLLLDKHFLDLLCC 110 >gi|14325177|dbj|BAB60102.1| molybdenum cofactor biosynthesis protein [Thermoplasma volcanium GSS1] Length = 606 Score = 41.5 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 5/100 (5%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L + +R C +C F + DQ+ ++ +TGG Sbjct: 145 LGNIVVTNRCDLSCWYC--FFYAKENEPIYEPTQDQIRMMLRRMKNEKPVGANAVQITGG 202 Query: 94 EPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWI 131 EP ++ D + +++ + G+ + + TN ++ D++ Sbjct: 203 EPTMRDDIIDIVRIAREEGYDHVQLNTN-SVRAAFDPDFV 241 >gi|332160274|ref|YP_004296851.1| putative pyruvate formate-lyase 3 activating enzyme [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607156|emb|CBY28654.1| pyruvate formate-lyase activating enzyme [Yersinia enterocolitica subsp. palearctica Y11] gi|325664504|gb|ADZ41148.1| putative pyruvate formate-lyase 3 activating enzyme [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863012|emb|CBX73144.1| putative pyruvate formate-lyase 3-activating enzyme [Yersinia enterocolitica W22703] Length = 299 Score = 41.5 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G ++D + + + G L+GGEP +Q V L+Q +++G AVE+ Sbjct: 101 GSPIDIDATMETLLRDLPFYRRSGGGVTLSGGEPFMQPAVAAELLQRCHQQGIHTAVES 159 >gi|289624772|ref|ZP_06457726.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330871198|gb|EGH05907.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 389 Score = 41.5 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C + +G +Q +++E G + + Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELTTEQWFKVMQEAREMGAAQ---IGFS 76 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI GF + T+G Sbjct: 77 GGEPLVRQDLAELIAEARCLGFYTNLITSG 106 >gi|84490327|ref|YP_448559.1| organic radical activating protein [Methanosphaera stadtmanae DSM 3091] gi|84373646|gb|ABC57916.1| predicted organic radical activating enzyme [Methanosphaera stadtmanae DSM 3091] Length = 198 Score = 41.5 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 21/93 (22%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 ++F GC C C++ G Y+V +LA I K Sbjct: 22 SIFV--QGC-----------LKHCIGCNSPQTW-DLDGGILYDVKKLAKNI-----LKNK 62 Query: 84 EGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114 + +GGEP LQ L L+ G I Sbjct: 63 DIEGVTFSGGEPFLQSKALGELAVILHDNGLSI 95 >gi|16081755|ref|NP_394141.1| hypothetical protein Ta0670 [Thermoplasma acidophilum DSM 1728] gi|10639956|emb|CAC11808.1| conserved hypothetical protein [Thermoplasma acidophilum] Length = 571 Score = 41.5 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 5/100 (5%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L + +R C +C F + DQ+ ++ +TGG Sbjct: 110 LGNIVVTNRCDLSCWYC--FFYAKENEPIYEPTQDQIRMMLRRMKNEKPVGANAVQITGG 167 Query: 94 EPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWI 131 EP ++ D + +++ + G+ + + TN ++ D++ Sbjct: 168 EPTMRDDIIDIVRIAREEGYDHVQLNTN-SVRAAFDPDFV 206 >gi|315267700|gb|ADT94553.1| Radical SAM domain protein [Shewanella baltica OS678] Length = 286 Score = 41.5 bits (97), Expect = 0.070, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 17/105 (16%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCV 89 NL + S +C CDT + Y V+++ ++ Q Sbjct: 60 NLNNKPRISWDSERCSQCDTCLAVCPKQASPKVTHYTVEEILGILHSQR----HFINGIT 115 Query: 90 LTGGEPLLQVDVPLIQALNK--------RGFEIAVETNGTIEPPQ 126 ++GGE LQ +P I AL K ++TNG++ Sbjct: 116 VSGGEASLQ--LPFIIALFKGIKASESLSHLTCMLDTNGSLSLTG 158 >gi|288803833|ref|ZP_06409259.1| pyruvate formate-lyase 1-activating enzyme [Prevotella melaninogenica D18] gi|288333667|gb|EFC72116.1| pyruvate formate-lyase 1-activating enzyme [Prevotella melaninogenica D18] Length = 257 Score = 41.5 bits (97), Expect = 0.070, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 30/126 (23%) Query: 2 KLYSI--KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFV 55 + + E F ++ G G +F GC + +C++C DT Sbjct: 16 MMLRVHSVESFGSVDGPGIRFV----IF--LKGC-----------AMRCQYCHNPDT--- 55 Query: 56 GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFE 113 G +VD + +++ + ++GGE LL Q L + G Sbjct: 56 -WDRAGGNLRSVDDVLSQ-AQRYRSYWGTKGGITVSGGEALLQIQPLTELFRKAKALGIN 113 Query: 114 IAVETN 119 ++T+ Sbjct: 114 TCLDTS 119 >gi|218886327|ref|YP_002435648.1| molybdenum cofactor biosynthesis protein A [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757281|gb|ACL08180.1| molybdenum cofactor biosynthesis protein A [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 361 Score = 41.5 bits (97), Expect = 0.070, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 12/91 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLL 97 DR + +C +C ++ D + ++ + E+ LTGGEP + Sbjct: 29 DRCNLRCSYC------WGCSEMRFIPHDDVLRYEEMARIVDVAVEEGVEKVRLTGGEPFV 82 Query: 98 QVDVP-LIQALNKRG--FEIAVETNGTIEPP 125 + + + L++R +I + TNGT+ P Sbjct: 83 RKGLTGFLDMLHRRHPALDIRITTNGTLLAP 113 >gi|171058974|ref|YP_001791323.1| molybdenum cofactor biosynthesis protein A [Leptothrix cholodnii SP-6] gi|170776419|gb|ACB34558.1| molybdenum cofactor biosynthesis protein A [Leptothrix cholodnii SP-6] Length = 381 Score = 41.5 bits (97), Expect = 0.070, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 15/131 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C V + + + + ++ I E+ R LTGGEPLL+ Sbjct: 50 DRCNFRCSYCMPKEVFDKNHQFLPHAQLLSFEEITRLARIFVERGVRKIRLTGGEPLLRK 109 Query: 100 DVP-LIQALN------KRGFEIAVETNGTIEP-------PQGIDWICVSPKAGCDLKIKG 145 ++ LI+ L + ++ + TNG++ G+ + VS A D + Sbjct: 110 NIERLIEMLAVLRTPDGQALDLTLTTNGSLLARKARSLRDAGLQRVTVSLDAMDDAIFRR 169 Query: 146 GQELKLVFPQV 156 ++ V Sbjct: 170 MNDVDFPVADV 180 >gi|328469356|gb|EGF40302.1| putative pyruvate formate-lyase 3 activating enzyme [Vibrio parahaemolyticus 10329] Length = 309 Score = 41.5 bits (97), Expect = 0.071, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 G D L +++ + ++ +GGEPL+Q ++ L + L++ AVE+ Sbjct: 110 GEAAKSDDLFEVLMKDKPFYDQSQGGVTFSGGEPLMQPNLVAELAERLHQNHVSTAVESC 169 Query: 120 GTIEP 124 + Sbjct: 170 MHVPW 174 >gi|256751942|ref|ZP_05492812.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256749147|gb|EEU62181.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 522 Score = 41.5 bits (97), Expect = 0.071, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 11/76 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPL 103 C FC G Q ++ QL ++ + +TGGEPL++ PL Sbjct: 217 NCNFC--QIGGPQKDTNKSFDCKQLVRFLK-------GNNYHIQITGGEPLIRKSELTPL 267 Query: 104 IQALNKRGFEIAVETN 119 I+ L K G I + TN Sbjct: 268 IRELKKDGHIITLLTN 283 >gi|118576476|ref|YP_876219.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A] gi|118194997|gb|ABK77915.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A] Length = 315 Score = 41.5 bits (97), Expect = 0.071, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 25/109 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + + + V++ +I+E++ + + Sbjct: 47 CNL-----------HCVHC---YWWLNRKENEELGVEEWKKIIDEKF--KKNHVFVVTVV 90 Query: 92 GGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGID----WICVS 134 GGEPL++ ++ + KR + TNGT P+ D WI + Sbjct: 91 GGEPLMRPEIVELFAKEFPKRACVV---TNGTWPIPRLRDIYFYWISID 136 >gi|144900214|emb|CAM77078.1| Fe-S oxidoreductase [Magnetospirillum gryphiswaldense MSR-1] Length = 437 Score = 41.5 bits (97), Expect = 0.071, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C + G + ++ D I EQ + L+ Sbjct: 163 CNL-----------RCAMC--GHEVWKSNSG--FMEMEVFDRILEQSKANGITTLHI-LS 206 Query: 92 G-GEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 G GEP+L V +++ GF + + TNGT Sbjct: 207 GQGEPMLHPQVFEMLEKAVAMGFNVGIVTNGT 238 >gi|118497356|ref|YP_898406.1| radical SAM family protein [Francisella tularensis subsp. novicida U112] gi|195536045|ref|ZP_03079052.1| radical SAM domain protein [Francisella tularensis subsp. novicida FTE] gi|118423262|gb|ABK89652.1| radical SAM family protein [Francisella novicida U112] gi|194372522|gb|EDX27233.1| radical SAM domain protein [Francisella tularensis subsp. novicida FTE] Length = 361 Score = 41.5 bits (97), Expect = 0.071, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 16/92 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R S++C + ++ ++ +I+ VL+ Sbjct: 16 CNLKCV--HCRSSSEC----------EVLGHPDFSTEEGFRIIDSIVAFA---NPVLVLS 60 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ D+ L + +G +A+ TNG++ Sbjct: 61 GGEPLLRADIFELAEYGANKGLRMALATNGSL 92 >gi|91777663|ref|YP_552871.1| pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia xenovorans LB400] gi|91690323|gb|ABE33521.1| Pyrroloquinoline quinone synthesis E [Burkholderia xenovorans LB400] Length = 407 Score = 41.5 bits (97), Expect = 0.071, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 9/91 (9%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVL 90 LW E R C FC + + T R + +Q ++ E G + + Sbjct: 23 PLWLLAELTYRCPLHCAFC---YNPVDYTDHSRELSTEQWIGVLREARALGAAQLGF--- 76 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL++ D+ L+ K GF + T+G Sbjct: 77 SGGEPLVRDDLEVLVGEARKLGFYTNLITSG 107 >gi|13541763|ref|NP_111451.1| Fe-S oxidoreductase [Thermoplasma volcanium GSS1] Length = 571 Score = 41.5 bits (97), Expect = 0.071, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 5/100 (5%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L + +R C +C F + DQ+ ++ +TGG Sbjct: 110 LGNIVVTNRCDLSCWYC--FFYAKENEPIYEPTQDQIRMMLRRMKNEKPVGANAVQITGG 167 Query: 94 EPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWI 131 EP ++ D + +++ + G+ + + TN ++ D++ Sbjct: 168 EPTMRDDIIDIVRIAREEGYDHVQLNTN-SVRAAFDPDFV 206 >gi|20089004|ref|NP_615079.1| molybdenum cofactor biosynthesis protein A [Methanosarcina acetivorans C2A] gi|24211983|sp|Q8TUG2|MOAA_METAC RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|19913858|gb|AAM03559.1| molybdenum cofactor biosynthesis protein A [Methanosarcina acetivorans C2A] Length = 334 Score = 41.5 bits (97), Expect = 0.071, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 21/111 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + + C C G+ G + + + ++ E + R + Sbjct: 40 CNLSCMYCHNEGADCCS-C--------GSLGHEMSPELICGIVRE---AAKFGVRKVKFS 87 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134 GGEPL + D I A E++ TNG T++ G+D + VS Sbjct: 88 GGEPLFRKDFEEILACLPPLKEVSATTNGILLEKRAKTLKA-AGLDRVNVS 137 >gi|260681933|ref|YP_003213218.1| 4-hydroxyphenylacetate decarboxylase activating subunit [Clostridium difficile CD196] gi|260685531|ref|YP_003216664.1| 4-hydroxyphenylacetate decarboxylase activating subunit [Clostridium difficile R20291] gi|260208096|emb|CBA60347.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile CD196] gi|260211547|emb|CBE01729.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile R20291] Length = 326 Score = 41.5 bits (97), Expect = 0.072, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 Y VD+L +I+ + +GGEPLLQ + ++ ++ A+ET+ Sbjct: 127 YTVDELVQVIKRD-SNNWRSNGGVTFSGGEPLLQHEFLHEVLLKCHEVNIHTAIETS 182 >gi|161353606|ref|NP_459945.2| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|162139598|ref|YP_215911.2| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168466557|ref|ZP_02700419.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|198246171|ref|YP_002214893.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|224582779|ref|YP_002636577.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|195630908|gb|EDX49494.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197940687|gb|ACH78020.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|224467306|gb|ACN45136.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|267992705|gb|ACY87590.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312911957|dbj|BAJ35931.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223293|gb|EFX48362.1| Pyruvate formate-lyase activating enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322713963|gb|EFZ05534.1| Pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326622646|gb|EGE28991.1| Pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 265 Score = 41.5 bits (97), Expect = 0.072, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 58/177 (32%), Gaps = 36/177 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 46 FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEDLMKEVVTYRHFMNASG 90 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKAGCDL 141 +GGE +LQ + +A K G ++TNG ID + V+ DL Sbjct: 91 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDL 150 Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198 K E+ Q V N+ +F ++ ++N + I Y P W Sbjct: 151 KQMN-DEI----HQNLVGVSNHRTLEFAQY--------LSKKNVKVWIRYVVV-PGW 193 >gi|238797475|ref|ZP_04640973.1| pyruvate formate-lyase 3-activating enzyme [Yersinia mollaretii ATCC 43969] gi|238718616|gb|EEQ10434.1| pyruvate formate-lyase 3-activating enzyme [Yersinia mollaretii ATCC 43969] Length = 299 Score = 41.5 bits (97), Expect = 0.072, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G +++ + + + G L+GGEP +Q ++ L+Q ++ G AVE+ Sbjct: 101 GNPIDIEATMETLLRDLPFYRRSGGGVTLSGGEPFMQPEIAAELLQRCHQLGIHTAVES 159 >gi|255523841|ref|ZP_05390805.1| glycyl-radical enzyme activating protein family [Clostridium carboxidivorans P7] gi|255512403|gb|EET88679.1| glycyl-radical enzyme activating protein family [Clostridium carboxidivorans P7] Length = 300 Score = 41.5 bits (97), Expect = 0.073, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 6/90 (6%) Query: 43 LSAQCRFCD--TDFV--GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 +C C TDF + G V +L I + + ++ G +GGEPL+ Sbjct: 80 DEEKCALCGKCTDFCPNTAREYVGKDVTVSELMKEIMKDEVFYDESGGGVTFSGGEPLIH 139 Query: 99 VDV--PLIQALNKRGFEIAVETNGTIEPPQ 126 +D +++ ++G V+T+G + Sbjct: 140 IDFLNEVLKKCKEKGIHTTVDTSGCVPWES 169 >gi|188534276|ref|YP_001908073.1| Pyruvate formate lyase activating enzyme 1 [Erwinia tasmaniensis Et1/99] gi|188029318|emb|CAO97195.1| Pyruvate formate lyase activating enzyme 1 [Erwinia tasmaniensis Et1/99] Length = 254 Score = 41.5 bits (97), Expect = 0.073, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G +V +L D + G Sbjct: 35 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVSVAELMDDVLSYRHYINASG 79 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A +G ++TNG Sbjct: 80 GGVTASGGEAILQAEFVRDWFRACRAKGIHTCLDTNG 116 >gi|166368417|ref|YP_001660690.1| radical S-adenosylmethionine superfamily protein [Microcystis aeruginosa NIES-843] gi|166090790|dbj|BAG05498.1| radical S-adenosylmethionine superfamily protein [Microcystis aeruginosa NIES-843] Length = 338 Score = 41.5 bits (97), Expect = 0.073, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Query: 86 RYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144 + GGEPLL + +++ L R + + TN + + +D SP + + Sbjct: 74 PVVSIPGGEPLLHPQIDEIVKGLVDRKKFVYLCTN-ALLLEKSLDKFTPSPYLTFSVHLD 132 Query: 145 G 145 G Sbjct: 133 G 133 >gi|171184746|ref|YP_001793665.1| radical SAM domain-containing protein [Thermoproteus neutrophilus V24Sta] gi|170933958|gb|ACB39219.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta] Length = 357 Score = 41.5 bits (97), Expect = 0.073, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 9/91 (9%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 LW + QCR+C F + ++A I + GG Sbjct: 2 LWFVLTTGACNLQCRYCGGSFDERHSPWRPKVAAGEVARFIAQ-----RDGKPVVFFYGG 56 Query: 94 EPLL--QVDVPLIQALNKRGFEIAVETNGTI 122 EPLL V +++AL F I TNGT+ Sbjct: 57 EPLLNPHYVVEVMEALPNARFGIQ--TNGTL 85 >gi|161075741|gb|ABX56618.1| coenzyme PQQ synthesis protein E [Methylacidiphilum infernorum V4] Length = 373 Score = 41.5 bits (97), Expect = 0.073, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-P 102 QC +C ++ + ++ +++E G + +GGEPL++ D+ Sbjct: 20 PLQCPYC-SNSTSYLHWLKKELSTEEWIRVLKEAQKLGILQ---VYFSGGEPLVRKDLIT 75 Query: 103 LIQALNKRGFEIAVETNGTI 122 LI+ + GF + T GT+ Sbjct: 76 LIRTAHDLGFYSNMSTGGTL 95 >gi|15615089|ref|NP_243392.1| molybdenum cofactor biosynthesis protein A [Bacillus halodurans C-125] gi|24212015|sp|Q9K9W9|MOAA_BACHD RecName: Full=Molybdenum cofactor biosynthesis protein A gi|10175146|dbj|BAB06245.1| molybdopterin cofactor biosynthesis [Bacillus halodurans C-125] Length = 338 Score = 41.5 bits (97), Expect = 0.073, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 20/110 (18%) Query: 41 DRLSAQCRFC---DT---DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ ++ T + ++ L+ + +TGGE Sbjct: 23 DRCNFRCHYCMPADIFGPDYPFLKKT--EILSFEETNRLV--HLFHQTSPIKKIRITGGE 78 Query: 95 PLLQVDVP-LIQALNK-RGFE-IAVETNGTIEP-------PQGIDWICVS 134 PL++ DV LI L G E +A+ TNGT+ P G+ + VS Sbjct: 79 PLMRKDVDQLISMLTATTGIEDVAMTTNGTLLPKMADKLKKAGLKRVTVS 128 >gi|330821990|ref|YP_004350852.1| Pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia gladioli BSR3] gi|327373985|gb|AEA65340.1| Pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia gladioli BSR3] Length = 398 Score = 41.5 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF G AD + Sbjct: 32 PLWLLAEVTYRCPLQCPYCSNPLDFARQGEELGT-------ADWVRVMGEARAMGAAQIG 84 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL++ D+P LI + G+ + T+G Sbjct: 85 FSGGEPLVRPDLPELIAEARRLGYYTNLITSG 116 >gi|312132964|ref|YP_004000303.1| pfla [Bifidobacterium longum subsp. longum BBMN68] gi|311773946|gb|ADQ03434.1| PflA [Bifidobacterium longum subsp. longum BBMN68] Length = 293 Score = 41.5 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 40/140 (28%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G +D + ++ Sbjct: 71 RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMIKKVDRYK 113 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG------TIEPPQGI 128 + +GGE ++Q + + + G ++T+G T E + I Sbjct: 114 DLFKATHGGITFSGGESMMQP--AFVSRVFHAAKEMGVHTCLDTSGFLNTNYTDEMLEDI 171 Query: 129 DWICVSPKAGCDLKIKGGQE 148 D +C+ L +K G E Sbjct: 172 D-LCL-------LDVKSGDE 183 >gi|289828913|ref|ZP_06546639.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 251 Score = 41.5 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 46 FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEDLMKEVVTYRHFMNASG 90 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 91 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 127 >gi|242014079|ref|XP_002427725.1| molybdopterin cofactor synthesis protein A, putative [Pediculus humanus corporis] gi|212512166|gb|EEB14987.1| molybdopterin cofactor synthesis protein A, putative [Pediculus humanus corporis] Length = 569 Score = 41.5 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 18/93 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + + D++ L E G K+ R LT Sbjct: 74 CNL-----------RCNYCMPEEGVHLSHRSNLLTTDEILKLSELFVRQGIKKIR---LT 119 Query: 92 GGEPLLQVDV-PLIQALNK-RGFE--IAVETNG 120 GGEP ++ D+ LI+ L K +G +++ TNG Sbjct: 120 GGEPTIRKDLSALIRGLKKLKGLTEGVSITTNG 152 >gi|148657495|ref|YP_001277700.1| radical SAM domain-containing protein [Roseiflexus sp. RS-1] gi|148569605|gb|ABQ91750.1| Radical SAM domain protein [Roseiflexus sp. RS-1] Length = 800 Score = 41.5 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 18/79 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C + + V + L EE G ++ V+T Sbjct: 462 CNLTC--------AHC------YAEAGPRRREAMPVGDVLRLAEEAARLGFQK---VVIT 504 Query: 92 GGEPLLQVD-VPLIQALNK 109 GGEPL+ L++ L Sbjct: 505 GGEPLMHPQRDALLEGLAA 523 Score = 34.6 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 12/83 (14%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------ 97 AQC +C + L G+ + GGEPLL Sbjct: 18 PAQCSYC-----FGPHQGSPTMSPATLEATARWARTLGDGGELHITFHGGEPLLPGVRFY 72 Query: 98 -QVDVPLIQALNKRGFEIAVETN 119 Q L L R + AV++N Sbjct: 73 RQALPLLRDGLAPRRVQFAVQSN 95 >gi|319943485|ref|ZP_08017767.1| molybdenum cofactor biosynthesis protein A [Lautropia mirabilis ATCC 51599] gi|319743300|gb|EFV95705.1| molybdenum cofactor biosynthesis protein A [Lautropia mirabilis ATCC 51599] Length = 381 Score = 41.5 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 29/116 (25%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D +F+ + G + +++ + G K+ R LTG Sbjct: 56 DRCNFRCSYCMPREVFGKDHEFL----SHGSLLSFEEITRVAGLMVGLGVKKIR---LTG 108 Query: 93 GEPLLQVDVP-LIQALN------KRGFEIAVETNGTIEP-------PQGIDWICVS 134 GEPLL+ D+ LI L+ + E+ + TNG++ G+D + VS Sbjct: 109 GEPLLRRDLETLIAQLSCLRQPDGQPVELTLTTNGSLLAKKAQSLREAGLDRVTVS 164 >gi|308234714|ref|ZP_07665451.1| pyruvate formate-lyase activating enzyme [Gardnerella vaginalis ATCC 14018] gi|311114518|ref|YP_003985739.1| pyruvate formate-lyase activating enzyme [Gardnerella vaginalis ATCC 14019] gi|310946012|gb|ADP38716.1| pyruvate formate-lyase activating enzyme [Gardnerella vaginalis ATCC 14019] Length = 293 Score = 41.5 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 28/135 (20%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G +D + ++ Sbjct: 71 RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMIKKVDRYQ 113 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130 + G +GGE ++Q + +A + G ++T+G T E ID Sbjct: 114 SLFKATGGGITFSGGESMMQPAFVSRVFRAAKEMGVHTCLDTSGFLNRNYTDEMIDDIDL 173 Query: 131 ICVSPKAGCDLKIKG 145 + K+G + K Sbjct: 174 CLLDVKSGIEETYKK 188 >gi|208779149|ref|ZP_03246495.1| radical SAM domain protein [Francisella novicida FTG] gi|254374177|ref|ZP_04989659.1| hypothetical protein FTDG_00340 [Francisella novicida GA99-3548] gi|151571897|gb|EDN37551.1| hypothetical protein FTDG_00340 [Francisella novicida GA99-3548] gi|208744949|gb|EDZ91247.1| radical SAM domain protein [Francisella novicida FTG] Length = 361 Score = 41.5 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 16/92 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R S++C + ++ ++ +I+ VL+ Sbjct: 16 CNLKCV--HCRSSSEC----------EVLGHPDFSTEEGFRIIDSIVAFA---NPVLVLS 60 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ D+ L + +G +A+ TNG++ Sbjct: 61 GGEPLLRADIFELAEYGANKGLRMALATNGSL 92 >gi|78044427|ref|YP_360054.1| radical SAM domain-containing protein [Carboxydothermus hydrogenoformans Z-2901] gi|77996542|gb|ABB15441.1| radical SAM domain protein [Carboxydothermus hydrogenoformans Z-2901] Length = 331 Score = 41.5 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 35/158 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL+ C + + ++ LI+E G + + + Sbjct: 11 CNLYC--------EHC------YRDAGAKVEEELSTEEGKALIDEIVKAG---FKIMIFS 53 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 GGEPL++ D + L+ +++G + TNGT+ I + K+K L Sbjct: 54 GGEPLMREDILELVDYASQKGLKPVFGTNGTL--------ITL----EMAQKLKKAGALA 101 Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 + +V PE + +RF P E Sbjct: 102 MGISLDSVDPEKH-----DRFRASPGSWEKAVEGMKNC 134 >gi|325294473|ref|YP_004280987.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064921|gb|ADY72928.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 384 Score = 41.5 bits (97), Expect = 0.075, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + + + G + G+ +D +A + VLT Sbjct: 20 CNLNCIHCRSSSTME------SEQGDFSFEDGKKLMDDIAKI----------SKPTIVLT 63 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ DV L ++GF + + TNG + Sbjct: 64 GGEPLLREDVWDLAAYGTEKGFRMCIATNGVL 95 >gi|257458934|ref|ZP_05624054.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Campylobacter gracilis RM3268] gi|257443638|gb|EEV18761.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Campylobacter gracilis RM3268] Length = 240 Score = 41.5 bits (97), Expect = 0.075, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 26/118 (22%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 F GCN+ +C +C + T G+ + ++ ++ + + Sbjct: 40 FCGCNM-----------RCNYC---YNPQIVTSRGKISNEEFLRFLDARAGKLQG----I 81 Query: 89 VLTGGE-PLLQVDVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVSPKAG 138 V +GGE +PL + +RGF + V+TNG+ ID+I + KA Sbjct: 82 VFSGGECTCASDFIPLAHEVKQRGFLLKVDTNGSNPQKIEEALNLGLIDYIALDFKAP 139 >gi|169828793|ref|YP_001698951.1| molybdenum cofactor biosynthesis protein A [Lysinibacillus sphaericus C3-41] gi|168993281|gb|ACA40821.1| Molybdenum cofactor biosynthesis protein A [Lysinibacillus sphaericus C3-41] Length = 308 Score = 41.5 bits (97), Expect = 0.075, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 8/73 (10%) Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-R 110 D+ + K + D++ L++ G K+ R +TGGEPLL+ D+ LI +++ Sbjct: 9 DYAFLSSDKILNF--DEIERLVKIFVSLGVKKVR---ITGGEPLLRRDLTELIARIHRLE 63 Query: 111 GFE-IAVETNGTI 122 G E IA+ TNGT+ Sbjct: 64 GVEDIALTTNGTL 76 >gi|57640225|ref|YP_182703.1| pyruvate-formate lyase-activating enzyme [Thermococcus kodakarensis KOD1] gi|57158549|dbj|BAD84479.1| pyruvate-formate lyase-activating enzyme [Thermococcus kodakarensis KOD1] Length = 306 Score = 41.5 bits (97), Expect = 0.075, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 8/88 (9%) Query: 37 GREQDRLSAQCR-FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 RE+ + C FC T G VD+L +E + G +GGEP Sbjct: 84 DREKCDVCGVCAEFCPT---SALKLVGRTITVDELMKEVERDVNLYDSSGGGVTFSGGEP 140 Query: 96 LLQVDVPLIQAL---NKRGFEIAVETNG 120 L Q L++AL +R A++T+G Sbjct: 141 LFQPKF-LVEALKASKERHINTALDTSG 167 >gi|303242884|ref|ZP_07329346.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] gi|302589581|gb|EFL59367.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] Length = 319 Score = 41.5 bits (97), Expect = 0.075, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 26/112 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR CD + + + +Q+ DLI E E + L+ Sbjct: 14 CNL-----------RCRMCD--YPSGKFWTNA-LSKEQIKDLIRE---AAELGVKTVELS 56 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ--------GIDWICVS 134 GGEP+++ D+ +I ++ + +NG + P+ G+ + S Sbjct: 57 GGEPMMRKDIYEIISFAASLNLKVFMASNGVLIGPEEVKKLLDAGLTLVTFS 108 >gi|283781822|ref|YP_003372577.1| radical SAM domain-containing protein [Pirellula staleyi DSM 6068] gi|283440275|gb|ADB18717.1| Radical SAM domain protein [Pirellula staleyi DSM 6068] Length = 309 Score = 41.5 bits (97), Expect = 0.075, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 8/91 (8%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW + C C FV T + DQ+ +EE G KE + T Sbjct: 24 LWFQVSGLLCNLACHHC---FVSSSPTNRSLEMLSFDQIKTRLEESIPLGVKEYYF---T 77 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 GGEP L + I L+ + V TNGT+ Sbjct: 78 GGEPFLHPQMTEILELSLQYGPTTVLTNGTV 108 >gi|16759841|ref|NP_455458.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142386|ref|NP_805728.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|167550356|ref|ZP_02344113.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168230866|ref|ZP_02655924.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236882|ref|ZP_02661940.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240823|ref|ZP_02665755.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263542|ref|ZP_02685515.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168822927|ref|ZP_02834927.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446466|ref|YP_002040168.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448873|ref|YP_002044962.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194468500|ref|ZP_03074484.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735970|ref|YP_002114021.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248756|ref|YP_002145888.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263733|ref|ZP_03163807.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200389762|ref|ZP_03216373.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930015|ref|ZP_03221036.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|213161616|ref|ZP_03347326.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417319|ref|ZP_03350463.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424589|ref|ZP_03357372.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213648477|ref|ZP_03378530.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213851463|ref|ZP_03381361.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238913256|ref|ZP_04657093.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|25285894|pir||AH0612 pyruvate formate-lyase 1 activating enzyme [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502134|emb|CAD05370.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica subsp. enterica serovar Typhi] gi|29138016|gb|AAO69577.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|194405129|gb|ACF65351.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407177|gb|ACF67396.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194454864|gb|EDX43703.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711472|gb|ACF90693.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197212459|gb|ACH49856.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241988|gb|EDY24608.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290138|gb|EDY29495.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199602207|gb|EDZ00753.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321009|gb|EDZ06210.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205324549|gb|EDZ12388.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205334729|gb|EDZ21493.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339962|gb|EDZ26726.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340734|gb|EDZ27498.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347768|gb|EDZ34399.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|322616401|gb|EFY13310.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619651|gb|EFY16526.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622653|gb|EFY19498.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629802|gb|EFY26577.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632476|gb|EFY29222.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637029|gb|EFY33732.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641610|gb|EFY38247.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646103|gb|EFY42619.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649595|gb|EFY46026.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654103|gb|EFY50426.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658635|gb|EFY54897.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663492|gb|EFY59694.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670228|gb|EFY66368.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671464|gb|EFY67586.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676820|gb|EFY72887.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682745|gb|EFY78764.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686424|gb|EFY82406.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195947|gb|EFZ81114.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199765|gb|EFZ84854.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202758|gb|EFZ87794.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209029|gb|EFZ93966.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211505|gb|EFZ96344.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218010|gb|EGA02725.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219918|gb|EGA04394.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226858|gb|EGA11041.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229812|gb|EGA13935.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233037|gb|EGA17133.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240772|gb|EGA24814.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243088|gb|EGA27109.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249749|gb|EGA33651.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252778|gb|EGA36616.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255845|gb|EGA39592.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260015|gb|EGA43643.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267984|gb|EGA51463.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269831|gb|EGA53280.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 265 Score = 41.5 bits (97), Expect = 0.075, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 46 FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEDLMKEVVTYRHFMNASG 90 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 91 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 127 >gi|331086370|ref|ZP_08335450.1| molybdenum cofactor biosynthesis protein A [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406136|gb|EGG85659.1| molybdenum cofactor biosynthesis protein A [Lachnospiraceae bacterium 9_1_43BFAA] Length = 332 Score = 41.5 bits (97), Expect = 0.076, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 29/135 (21%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGR-YNVDQLAD---LIEEQWITGEKEGRYCVLTGGE 94 DR + +CR+C D GI+ + ++++A+ + E IT K +TGGE Sbjct: 18 DRCNLRCRYCMPD----GIKSIPMEKILTLEEIAEVCQIASELGITKFK------VTGGE 67 Query: 95 PLLQVD-VPLIQALNKRGF--EIAVETNGTIEP-------PQGIDWICVSPKAGCDLK-- 142 PL++ + LI L ++ + TNG + GID + VS C K Sbjct: 68 PLVRKGCIELIHMLKALPHTEQVTLTTNGILLAVYAKELKEAGIDGVNVSLDTLCAEKFA 127 Query: 143 -IKGGQELKLVFPQV 156 I G LK V + Sbjct: 128 EITGYDRLKDVLEGI 142 >gi|193214591|ref|YP_001995790.1| molybdenum cofactor biosynthesis protein A [Chloroherpeton thalassium ATCC 35110] gi|193088068|gb|ACF13343.1| molybdenum cofactor biosynthesis protein A [Chloroherpeton thalassium ATCC 35110] Length = 371 Score = 41.5 bits (97), Expect = 0.076, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 14/95 (14%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA----DLIEEQWITGEKEGRYC 88 N DR + +C +C KG R+ +++ + G Sbjct: 55 NYLRVAVTDRCNFRCVYC-------MPEKGIRFKPATALLSAKEILRVIGLAGSLGVEKV 107 Query: 89 VLTGGEPLLQVDVP--LIQALNKRGFE-IAVETNG 120 TGGEPLL+ D+P L +A G + + TNG Sbjct: 108 RFTGGEPLLREDLPEILSEAAALPGIRSLHLTTNG 142 >gi|301345077|ref|ZP_07225818.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter baumannii AB056] Length = 197 Score = 41.5 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 20/174 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C D+ + + D+ ++ G + + Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFDVFDQARQMGAVQLGF-- 61 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140 +GGEPL+ Q L+ ++ GF + T+G + G+D I +S +A Sbjct: 62 -SGGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTEQRISHLKQAGLDHIQISFQASDP 120 Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 + K F Q +D+ L + + + I C + Sbjct: 121 VVNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIDKIIELCLE 173 >gi|302335095|ref|YP_003800302.1| pyruvate formate-lyase activating enzyme [Olsenella uli DSM 7084] gi|301318935|gb|ADK67422.1| pyruvate formate-lyase activating enzyme [Olsenella uli DSM 7084] Length = 253 Score = 41.5 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 23/97 (23%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC + +CR+C DT KG + D L D E++ Sbjct: 23 IF--LQGCPM-----------RCRYCHNVDT----WPLDKGSETSADDLLDK-AERYRGY 64 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAV 116 ++GGE LLQ + + L ++R + Sbjct: 65 WGPQGGITVSGGEALLQAEFVLELFTKAHERHVNTCL 101 >gi|116696106|ref|YP_841682.1| Fe-S oxidoreductase [Ralstonia eutropha H16] gi|113530605|emb|CAJ96952.1| Predicted Fe-S oxidoreductase [Ralstonia eutropha H16] Length = 389 Score = 41.5 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 22/120 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R +V + + ++E + Sbjct: 38 CNL-----------ACSGCGKIDY--PDPILNQRLSVQECLEAVDECG------APVVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEPLL D+P ++Q + R + + TN + + +D SP + + G +E+ Sbjct: 79 AGGEPLLHKDMPQIVQGIIARRKFVYLCTN-ALLMEKKLDQYQPSPYFIWSVHLDGDREM 137 >gi|40062747|gb|AAR37641.1| molybdenum cofactor biosynthesis protein A [uncultured marine bacterium 439] Length = 331 Score = 41.5 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%) Query: 41 DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 D + +C +C D D T+ + +++ ++ + E LTGGEPLL+ Sbjct: 21 DHCNYRCHYCRDEDH-QTHTTRSEVLSFEEIVKIV---GLFAELGVTKVRLTGGEPLLRK 76 Query: 100 D-VPLIQALNK 109 D + L + L Sbjct: 77 DILDLTRMLGD 87 >gi|311108349|ref|YP_003981202.1| molybdenum cofactor biosynthesis protein A 2 [Achromobacter xylosoxidans A8] gi|310763038|gb|ADP18487.1| molybdenum cofactor biosynthesis protein A 2 [Achromobacter xylosoxidans A8] Length = 380 Score = 41.5 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 25/114 (21%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D+ + + + ++++ L G ++ R LTGGE Sbjct: 60 DRCNFRCTYCMPREVFDSSYTFM--PHAALLSFEEISRLAGIFTQLGVEKIR---LTGGE 114 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 PLL+ + L+ L + R ++ + TNG++ G+ + VS Sbjct: 115 PLLRKHIENLVGQLAELRTPAGRPLDLTLTTNGSMLARKAAALKSAGLTRVTVS 168 >gi|302335104|ref|YP_003800311.1| glycyl-radical enzyme activating protein family [Olsenella uli DSM 7084] gi|301318944|gb|ADK67431.1| glycyl-radical enzyme activating protein family [Olsenella uli DSM 7084] Length = 314 Score = 41.5 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119 G +D + +E G L+GGE L Q + L + A RG+ A+ET Sbjct: 112 GDDRTIDDVIAFFDEDADFYRMSGGGITLSGGEVLAQPEAALSILMAAKARGYHTAIETC 171 Query: 120 G 120 G Sbjct: 172 G 172 >gi|242278713|ref|YP_002990842.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638] gi|242121607|gb|ACS79303.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638] Length = 402 Score = 41.5 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + + G + ++ LI+ TG+ + T Sbjct: 67 CNLACKHCRAEAHPE-------------PYPGELSTEEAKALIDTFPETGD---PIIIFT 110 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122 GGEPLL L+ N +G + NGT+ Sbjct: 111 GGEPLLRHDVFELVSYANDKGLRCVMAPNGTL 142 >gi|70607233|ref|YP_256103.1| hypothetical protein Saci_1489 [Sulfolobus acidocaldarius DSM 639] gi|68567881|gb|AAY80810.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639] Length = 323 Score = 41.5 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 22/92 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC + G G + +++ +I+ ++ VL+ Sbjct: 34 CNL-----------HCSFC--NPSYYNGELGES-STEKVKKMID-----NMRDSSIVVLS 74 Query: 92 --GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEP + Q + L++ + F + + TNG Sbjct: 75 FEGGEPTIRQDILELLEYAHDGSFYVMLTTNG 106 >gi|21226411|ref|NP_632333.1| metallo cofactor biosynthesis protein [Methanosarcina mazei Go1] gi|20904669|gb|AAM30005.1| metallo cofactor biosynthesis protein [Methanosarcina mazei Go1] Length = 399 Score = 41.5 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + D +F T+ G+ +D LA + + Sbjct: 50 CNLKCVHCYAQAK------DEEFKNELSTEEGKALIDDLAA----------FGSPVMLFS 93 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GGEP ++ D+P L ++G + TNGT+ Sbjct: 94 GGEPTIRKDLPELAAYAREKGMRAVISTNGTL 125 >gi|23465523|ref|NP_696126.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium longum NCC2705] gi|23326183|gb|AAN24762.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium longum NCC2705] Length = 293 Score = 41.5 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 40/140 (28%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G +D + ++ Sbjct: 71 RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMIKKVDRYK 113 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG------TIEPPQGI 128 + +GGE ++Q + + + G ++T+G T E + I Sbjct: 114 DLFKATHGGITFSGGESMMQP--AFVSRVFHAAKEMGVHTCLDTSGFLNTNYTDEMLEDI 171 Query: 129 DWICVSPKAGCDLKIKGGQE 148 D +C+ L +K G E Sbjct: 172 D-LCL-------LDVKSGDE 183 >gi|312621308|ref|YP_004022921.1| Radical SAM domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] gi|312201775|gb|ADQ45102.1| Radical SAM domain protein [Caldicellulosiruptor kronotskyensis 2002] Length = 430 Score = 41.5 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 12/90 (13%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 C+ C + + +++ + ++ + +++GGEP L+ D ++ Sbjct: 101 CKGC---YSFNKYRNKEDFDL-SVDVFVDSIKQLKNYGLKRVIISGGEPTLRDD---LEV 153 Query: 107 LNKRGFEIAVE-----TNGTIEPPQGIDWI 131 L + I++E TNG P + I+ + Sbjct: 154 LLREIKNISIEYVCLITNGIYFPEKLINVV 183 >gi|294496604|ref|YP_003543097.1| radical SAM protein [Methanohalophilus mahii DSM 5219] gi|292667603|gb|ADE37452.1| Radical SAM domain protein [Methanohalophilus mahii DSM 5219] Length = 492 Score = 41.5 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 22/109 (20%) Query: 30 SGCNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNV--DQLADL 73 +GC L G +R + C C F + T+G Y Q+ D+ Sbjct: 71 AGCPLSCGLCPSHKTTTLLANIDVTNRCNLNCPIC---FANAK-TRGFIYEPSFQQIEDM 126 Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGF-EIAVETNG 120 ++ +GGEP ++ D+P IQ + GF +I + TNG Sbjct: 127 LKILREEKPTPCAAIQFSGGEPTVRDDLPAMIQKAKELGFVQIQIATNG 175 >gi|302346841|ref|YP_003815139.1| pyruvate formate-lyase 1-activating enzyme [Prevotella melaninogenica ATCC 25845] gi|302150736|gb|ADK96997.1| pyruvate formate-lyase 1-activating enzyme [Prevotella melaninogenica ATCC 25845] Length = 269 Score = 41.5 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 30/126 (23%) Query: 2 KLYSI--KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFV 55 + + E F ++ G G +F GC + +C++C DT Sbjct: 28 MMLRVHSVESFGSVDGPGIRFV----IF--LKGC-----------AMRCQYCHNPDT--- 67 Query: 56 GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFE 113 G +VD + +++ + ++GGE LL Q L + G Sbjct: 68 -WDRAGGNLRSVDDVLSQ-AQRYRSYWGTKGGITVSGGEALLQIQPLTELFRKAKALGIN 125 Query: 114 IAVETN 119 ++T+ Sbjct: 126 TCLDTS 131 >gi|237750926|ref|ZP_04581406.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Helicobacter bilis ATCC 43879] gi|229373371|gb|EEO23762.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Helicobacter bilis ATCC 43879] Length = 193 Score = 41.5 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 18/92 (19%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GC C+ C G +++ + + I+EQ + + Sbjct: 23 TQGCP-----------IHCKGCWNTHTW-DSKGGFTMDIESIFNNIKEQKDSKTLPIQAV 70 Query: 89 VLTGGEPL-----LQVDVPLIQALNKRGFEIA 115 + GGEP L V LI++L G + Sbjct: 71 TILGGEPFYQYDELYKLVSLIKSL-DLGIIVY 101 >gi|229132578|ref|ZP_04261427.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BDRD-ST196] gi|228650924|gb|EEL06910.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BDRD-ST196] Length = 307 Score = 41.5 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 21/150 (14%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ D+P LIQ LN+ G E I + Sbjct: 14 SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRKDLPKLIQRLNEIDGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVSPKAGCDLKIKGGQ----ELKLVFPQVNVSPENYIG 165 TNG++ D + VS + + + ++K V + + E + Sbjct: 71 TTNGSLLKKFASDLYKAGLSRVTVSLDSLNEERFSYLNGNRSKVKTVLAGIQAAAEAGMK 130 Query: 166 FDFERFSLQPMDGPFLEENTNLAISYCFQN 195 +Q G ++ +A Y +N Sbjct: 131 IKM-NMVVQ--KGKNEQDIVQMA-EYFKEN 156 >gi|194292677|ref|YP_002008584.1| enzyme, radical sam [Cupriavidus taiwanensis LMG 19424] gi|193226581|emb|CAQ72532.1| putative enzyme, Radical SAM [Cupriavidus taiwanensis LMG 19424] Length = 390 Score = 41.5 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 22/120 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R +V Q + ++E + Sbjct: 38 CNL-----------ACSGCGKIDY--PDPILNQRLSVQQCLEAVDECG------APVVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEPLL D+P ++Q + +R + + TN + + +D SP + + G +E+ Sbjct: 79 AGGEPLLHKDMPQIVQGIIERRKFVYLCTN-ALLMEKKLDQYQPSPYFIWSVHLDGDREM 137 >gi|220923213|ref|YP_002498515.1| radical SAM domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219947820|gb|ACL58212.1| Radical SAM domain protein [Methylobacterium nodulans ORS 2060] Length = 351 Score = 41.5 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 30/130 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + + ++++ VL Sbjct: 40 CNLL-----------CETC--PRTFETLEPPADMSWELFTRIVDQVPDVAR-----VVLH 81 Query: 92 G-GEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 G GEP+L +P +I+ L RG + TNGT+ ++PK +L G EL Sbjct: 82 GVGEPMLVKSLPRMIRYLKDRGTYVLFNTNGTL----------MNPKRFQELIDTGLDEL 131 Query: 150 KLVFPQVNVS 159 ++ + + Sbjct: 132 RVSLDAADRA 141 >gi|186475582|ref|YP_001857052.1| molybdenum cofactor biosynthesis protein A [Burkholderia phymatum STM815] gi|184192041|gb|ACC70006.1| molybdenum cofactor biosynthesis protein A [Burkholderia phymatum STM815] Length = 370 Score = 41.5 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 25/169 (14%) Query: 41 DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 DR + +C +C +++ L G ++ R LTGGEP Sbjct: 45 DRCNFRCVYC-MPRAVFGKDYPFLPHSALLTFEEIERLAAIFVAHGVEKIR---LTGGEP 100 Query: 96 LLQVDVP-LIQALN----KRGFE--IAVETNGTIEP-------PQGIDWICVSPKAGCDL 141 LL+ ++ LI+ L G + + TNG++ G++ + VS A D Sbjct: 101 LLRKNLEFLIERLARMTTAAGKPLDLTLTTNGSLLARKARSLKDAGLNRVTVSLDALDDA 160 Query: 142 KIKGGQELKLVFPQV--NVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 + + V + +G + ++ G E LA Sbjct: 161 LFRRMNDADFAVSDVLHGIEVAQSVGLAPLKVNMVVKRGTNDSEIVPLA 209 >gi|56413979|ref|YP_151054.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362902|ref|YP_002142539.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128236|gb|AAV77742.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094379|emb|CAR59893.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 265 Score = 41.5 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 46 FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEDLMKEVVTYRHFMNASG 90 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 91 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 127 >gi|239627654|ref|ZP_04670685.1| formate acetyltransferase activating enzyme [Clostridiales bacterium 1_7_47_FAA] gi|239517800|gb|EEQ57666.1| formate acetyltransferase activating enzyme [Clostridiales bacterium 1_7_47FAA] Length = 283 Score = 41.5 bits (97), Expect = 0.079, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 40/129 (31%), Gaps = 35/129 (27%) Query: 24 AVFCRFSGCNLWSGREQD-----------RLSAQCRFC----------DTDFVGIQGTK- 61 VF GC L + R C C DT + + Sbjct: 24 TVF--LKGCPLRCMWCHNPEGLSYKPQLMRSGNGCLHCGKCRDACSHPDTCVLCGSCVRA 81 Query: 62 ---------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG- 111 G + LA + + E+ G +GGEPL Q L++ L + G Sbjct: 82 CPKNLIRICGEEVTAEWLAGHLLKDKDYLEQVGGGITFSGGEPLGQPRF-LLECLERLGD 140 Query: 112 FEIAVETNG 120 +ET+G Sbjct: 141 VHTCIETSG 149 >gi|157363393|ref|YP_001470160.1| radical SAM domain-containing protein [Thermotoga lettingae TMO] gi|157313997|gb|ABV33096.1| Radical SAM domain protein [Thermotoga lettingae TMO] Length = 482 Score = 41.5 bits (97), Expect = 0.079, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 21/92 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + G+ G K ++++ +I++ G + V+T Sbjct: 121 CNL-----------NCVGC---YAGLYGRKYE-LTKEEVSKVIQQANELGIY---FWVIT 162 Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 GGEP + +++ N F I TNGT+ Sbjct: 163 GGEPFYWPYLMDILEEFNDNYFLIY--TNGTL 192 >gi|254239854|ref|ZP_04933176.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa 2192] gi|126193232|gb|EAZ57295.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa 2192] Length = 331 Score = 41.5 bits (97), Expect = 0.079, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 32/174 (18%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ ++++L + + G + R +TGGEPL+ Sbjct: 23 DRCDFRCTYCMSEDMQFLPRD----QVLSLEELYAVADAFIGLGVRRIR---ITGGEPLV 75 Query: 98 QVDVPLIQALNKRGFEIAVE-----TNGTIEPP-------QGIDWICVSPKAGCDLK--- 142 + + L + G +E TNG+ G+ + VS + + Sbjct: 76 RKGI--TGLLARLGQRAELEDLAITTNGSQLRERAAELKAAGVRRLNVSLDSLQRERFAA 133 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL-AISYCFQN 195 L+ V + + E FER L + ++ L + Y N Sbjct: 134 FTRSDRLEQVLDGIQAAREA----GFERIKLNCVVQKGRNDDEILNLVEYALAN 183 >gi|116049449|ref|YP_791748.1| molybdenum cofactor biosynthesis protein A [Pseudomonas aeruginosa UCBPP-PA14] gi|296390127|ref|ZP_06879602.1| molybdenum cofactor biosynthesis protein A [Pseudomonas aeruginosa PAb1] gi|115584670|gb|ABJ10685.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa UCBPP-PA14] Length = 331 Score = 41.5 bits (97), Expect = 0.079, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 63/175 (36%), Gaps = 34/175 (19%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ ++++L + + G + R +TGGEPL+ Sbjct: 23 DRCDFRCTYCMSEDMQFLPRD----QVLSLEELYAVADAFIGLGVRRIR---ITGGEPLV 75 Query: 98 QVDVP-LIQALNKRGFEIAVE-----TNGTIEPP-------QGIDWICVSPKAGCDLK-- 142 + + L+ L G +E TNG+ G+ + VS + + Sbjct: 76 RKGIAGLLARL---GQRAELEDLAITTNGSQLRERAAELKAAGVRRLNVSLDSLQRERFA 132 Query: 143 -IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL-AISYCFQN 195 L+ V + + E FER L + ++ L + Y N Sbjct: 133 AFTRSDRLEQVLDGIQAAREA----GFERIKLNCVVQKGRNDDEILDLVEYALAN 183 >gi|307295474|ref|ZP_07575310.1| molybdenum cofactor biosynthesis protein A [Sphingobium chlorophenolicum L-1] gi|306878513|gb|EFN09733.1| molybdenum cofactor biosynthesis protein A [Sphingobium chlorophenolicum L-1] Length = 341 Score = 41.5 bits (97), Expect = 0.079, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 13/88 (14%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +CR+C K ++++A L + G + R LTGGEPL++ D Sbjct: 33 DRCDLRCRYC-MAERMTFLPKDQVLTLEEIALLADLFIARGVRRIR---LTGGEPLVRRD 88 Query: 101 VPLIQALNKRGF-------EIAVETNGT 121 + + +++ G E+ + TNGT Sbjct: 89 I--VDLVHRIGRHVGKGLDEVTLTTNGT 114 >gi|261368899|ref|ZP_05981782.1| putative heme biosynthesis protein [Subdoligranulum variabile DSM 15176] gi|282568997|gb|EFB74532.1| putative heme biosynthesis protein [Subdoligranulum variabile DSM 15176] Length = 445 Score = 41.5 bits (97), Expect = 0.079, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 38/76 (50%), Gaps = 7/76 (9%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104 +C C ++ + D++ L ++ + G + LTGGEP ++ D L+ Sbjct: 111 RCPHC---YMKSGNAYNDELSTDEIKSLCDQFYHAGGTD---VFLTGGEPTVRPDFFELV 164 Query: 105 QALNKRGFEIAVETNG 120 + +++ G ++++ +NG Sbjct: 165 EYISRLGMKVSIYSNG 180 >gi|191167604|ref|ZP_03029415.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B7A] gi|190902365|gb|EDV62103.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B7A] Length = 265 Score = 41.5 bits (97), Expect = 0.079, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 46 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 90 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 91 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 127 >gi|15601942|ref|NP_245014.1| pyruvate formate lyase-activating enzyme 1 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720286|gb|AAK02161.1| Act [Pasteurella multocida subsp. multocida str. Pm70] Length = 246 Score = 41.5 bits (97), Expect = 0.079, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G V++L + Sbjct: 21 IRFILFMQGC-----------LMRCQYCHNRDT----WDLHAGKEITVEELMKEVVTYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + A K G ++TNG Sbjct: 66 FMNASGGGVTASGGEAVLQAEFVRDWFSACKKEGIHTCLDTNG 108 >gi|307354671|ref|YP_003895722.1| Radical SAM domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307157904|gb|ADN37284.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571] Length = 443 Score = 41.5 bits (97), Expect = 0.080, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 9/96 (9%) Query: 35 WSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 + +R + C +C + G +G +D+ I+E+ ++ + GGE Sbjct: 91 FCICLTERCNLACSYCGSGERG-RGRSFENETIDRAISFIKEETSASRRKNLNIRVFGGE 149 Query: 95 PLLQ--VDVPLIQALNK------RGFEIAVETNGTI 122 PLL+ + + L+ L + GF A+ TNGT+ Sbjct: 150 PLLEYNILIKLLSELKEWAVSRGTGFYAALITNGTM 185 >gi|218781894|ref|YP_002433212.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01] gi|218763278|gb|ACL05744.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01] Length = 340 Score = 41.5 bits (97), Expect = 0.080, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 22/98 (22%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL C++C +G + A + EG + Sbjct: 14 TGKCNL-----------ACKYC------YRGEPNNDVMKPEWAKTAIDL-AAASGEGFHI 55 Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFE--IAVETNGTI 122 +TGGEPLL D + L++ + K + + ++TNGT+ Sbjct: 56 QITGGEPLLAWDMILKLLEYIQKSKVQASVGLQTNGTL 93 >gi|197118777|ref|YP_002139204.1| L-lysine 2,3-aminomutase [Geobacter bemidjiensis Bem] gi|197088137|gb|ACH39408.1| L-lysine 2,3-aminomutase [Geobacter bemidjiensis Bem] Length = 344 Score = 41.5 bits (97), Expect = 0.080, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 6/71 (8%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 CRFC + +G ++ D I +I G+ R VL+GG+PLL D L Sbjct: 107 CRFC----MRKRGVGCASMAPAKVDDAIA--YIAGDPRIRDVVLSGGDPLLLPDDRLAAI 160 Query: 107 LNKRGFEIAVE 117 L+ VE Sbjct: 161 LSALSRIPHVE 171 >gi|49087864|gb|AAT51506.1| PA1505 [synthetic construct] Length = 332 Score = 41.5 bits (97), Expect = 0.080, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 32/174 (18%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ ++++L + + G + R +TGGEPL+ Sbjct: 23 DRCDFRCTYCMSEDMQFLPRD----QVLSLEELYAVADAFIGLGVRRIR---ITGGEPLV 75 Query: 98 QVDVPLIQALNKRGFEIAVE-----TNGTIEPP-------QGIDWICVSPKAGCDLK--- 142 + + L + G +E TNG+ G+ + VS + + Sbjct: 76 RKGI--TGLLARLGQRAELEDLAITTNGSQLRERAAELKAAGVRRLNVSLDSLQRERFAA 133 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL-AISYCFQN 195 L+ V + + E FER L + ++ L + Y N Sbjct: 134 FTRSDRLEQVLDGIQAAREA----GFERIKLNCVVQKGRNDDEILDLVEYALAN 183 >gi|194335250|ref|YP_002017044.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194307727|gb|ACF42427.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 428 Score = 41.5 bits (97), Expect = 0.080, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C V + + + +LI+E G +E + Sbjct: 107 CNLQC--------LHCV------VSAGESVTHDLSTRRCLELIDEWAAIGVQE---ITFS 149 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ D+ L A +R I++ TNGT+ Sbjct: 150 GGEPLLREDLFELAAAAKQRNLTISMATNGTL 181 >gi|15596702|ref|NP_250196.1| molybdenum cofactor biosynthesis protein A [Pseudomonas aeruginosa PAO1] gi|107100939|ref|ZP_01364857.1| hypothetical protein PaerPA_01001969 [Pseudomonas aeruginosa PACS2] gi|218892620|ref|YP_002441489.1| molybdenum cofactor biosynthesis protein A [Pseudomonas aeruginosa LESB58] gi|254234601|ref|ZP_04927924.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa C3719] gi|313106505|ref|ZP_07792735.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa 39016] gi|24212013|sp|Q9I3K7|MOAA2_PSEAE RecName: Full=Molybdenum cofactor biosynthesis protein A 2 gi|9947461|gb|AAG04894.1|AE004579_6 molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa PAO1] gi|126166532|gb|EAZ52043.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa C3719] gi|218772848|emb|CAW28658.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa LESB58] gi|310879237|gb|EFQ37831.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa 39016] Length = 331 Score = 41.5 bits (97), Expect = 0.080, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 32/174 (18%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ ++++L + + G + R +TGGEPL+ Sbjct: 23 DRCDFRCTYCMSEDMQFLPRD----QVLSLEELYAVADAFIGLGVRRIR---ITGGEPLV 75 Query: 98 QVDVPLIQALNKRGFEIAVE-----TNGTIEPP-------QGIDWICVSPKAGCDLK--- 142 + + L + G +E TNG+ G+ + VS + + Sbjct: 76 RKGI--TGLLARLGQRAELEDLAITTNGSQLRERAAELKAAGVRRLNVSLDSLQRERFAA 133 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL-AISYCFQN 195 L+ V + + E FER L + ++ L + Y N Sbjct: 134 FTRSDRLEQVLDGIQAAREA----GFERIKLNCVVQKGRNDDEILDLVEYALAN 183 >gi|329768807|ref|ZP_08260238.1| pyruvate formate-lyase 1-activating enzyme [Gemella sanguinis M325] gi|328839580|gb|EGF89155.1| pyruvate formate-lyase 1-activating enzyme [Gemella sanguinis M325] Length = 263 Score = 41.5 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 21/102 (20%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLA-DLIEEQWIT 80 VF F GC +C++C DT + V QL ++++ + Sbjct: 37 VF--FQGC-----------MLRCKYCHNPDT--WKMHNPDAKVVTVSQLTNEIVKYRNFF 81 Query: 81 GEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 EG ++GGE LLQ+D + L + L V+T G Sbjct: 82 EASEGGGVTVSGGESLLQLDFVLELFRQLKALDINTCVDTCG 123 >gi|303257958|ref|ZP_07343967.1| molybdenum cofactor biosynthesis protein A [Burkholderiales bacterium 1_1_47] gi|302859301|gb|EFL82383.1| molybdenum cofactor biosynthesis protein A [Burkholderiales bacterium 1_1_47] Length = 367 Score = 41.5 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 DR + +CR+C F V ++I I LTGGEPLL+ Sbjct: 45 DRCNFRCRYCMPKEKFEKDHCFLSHT-EVLSFEEIIRLAKIFAANGIEKIRLTGGEPLLR 103 Query: 99 VDVP-LIQALNK------RGFEIAVETNG 120 + LI+ L+K + ++AV TNG Sbjct: 104 KGIEFLIEELSKLKTWNGKPLDVAVTTNG 132 >gi|299143773|ref|ZP_07036853.1| 4Fe-4S binding domain protein/radical SAM domain protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518258|gb|EFI41997.1| 4Fe-4S binding domain protein/radical SAM domain protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 243 Score = 41.5 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 19/109 (17%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 A+F F GCNL + + + + Y+VD+L + +++ Sbjct: 23 AIF--FQGCNLNCSFCHNPETIK-----IIHSEEENDDIKFYSVDELFEKVKKI------ 69 Query: 84 EGRYCVLT--GGEPLLQVDVPLIQALNK---RGFEIAVETNGTIEPPQG 127 +T GGE + LIQ K I V+TNG I+ Sbjct: 70 RPFIVGITTSGGECTIHHKF-LIQFFKKIKTLNLNILVDTNGLIDLSNE 117 >gi|296453934|ref|YP_003661077.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum subsp. longum JDM301] gi|296183365|gb|ADH00247.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum subsp. longum JDM301] Length = 293 Score = 41.5 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 40/140 (28%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G +D + ++ Sbjct: 71 RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMIKKVDRYK 113 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG------TIEPPQGI 128 + +GGE ++Q + + + G ++T+G T E + I Sbjct: 114 DLFKATHGGITFSGGESMMQP--AFVSRVFHAAKEMGVHTCLDTSGFLNTSYTDEMLEDI 171 Query: 129 DWICVSPKAGCDLKIKGGQE 148 D +C+ L +K G E Sbjct: 172 D-LCL-------LDVKSGDE 183 >gi|294794074|ref|ZP_06759211.1| molybdenum cofactor biosynthesis protein A [Veillonella sp. 3_1_44] gi|294455644|gb|EFG24016.1| molybdenum cofactor biosynthesis protein A [Veillonella sp. 3_1_44] Length = 325 Score = 41.5 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 21/107 (19%) Query: 27 CRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 R S CN C +C ++ +VD+ +++ G K Sbjct: 16 VRLSLTDACNFC-----------CPYC-RPAEITPQSQTQLLSVDEWMNILGAFHHIGVK 63 Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGFE--IAVETNGTIEPPQG 127 R LTGGEPLL + L+ + + G+ I++ TNG++ + Sbjct: 64 AVR---LTGGEPLLYPHIEELLGRIKETGWFEDISMTTNGSLLASRA 107 >gi|228939284|ref|ZP_04101877.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228978776|ref|ZP_04139147.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis Bt407] gi|228781037|gb|EEM29244.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis Bt407] gi|228820479|gb|EEM66511.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 337 Score = 41.5 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L G + R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPD--YAFLKEEL--LLTFDEIERLARLFISMGVNKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 GEPLL+ D+P LI L K G + I + TNG Sbjct: 75 GEPLLRKDLPTLIARLAKLEGLKDIGLTTNG 105 >gi|40063022|gb|AAR37878.1| molybdenum cofactor biosynthesis protein A [uncultured marine bacterium 560] Length = 331 Score = 41.5 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 6/71 (8%) Query: 41 DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 D + +C +C D D T+ + +++ ++ G + R LTGGEPLL+ Sbjct: 21 DHCNYRCHYCRDEDH-QTHTTRSEVLSFEEIVKIVRLFAELGVTKVR---LTGGEPLLRR 76 Query: 100 D-VPLIQALNK 109 D + L + L Sbjct: 77 DILDLTRMLGD 87 >gi|228972163|ref|ZP_04132779.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228787647|gb|EEM35610.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 333 Score = 41.5 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L G + R LTG Sbjct: 18 DRCNFRCTYCMPAEVFGPD--YAFLKEEL--LLTFDEIERLARLFISMGVNKIR---LTG 70 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 GEPLL+ D+P LI L K G + I + TNG Sbjct: 71 GEPLLRKDLPTLIARLAKLEGLKDIGLTTNG 101 >gi|189439555|ref|YP_001954636.1| pyruvate-formate lyase-activating enzyme [Bifidobacterium longum DJO10A] gi|227546009|ref|ZP_03976058.1| pyruvate-formate lyase-activating enzyme [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621935|ref|ZP_04664966.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium longum subsp. infantis CCUG 52486] gi|317482295|ref|ZP_07941316.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium sp. 12_1_47BFAA] gi|322688884|ref|YP_004208618.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum subsp. infantis 157F] gi|322690859|ref|YP_004220429.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum subsp. longum JCM 1217] gi|189427990|gb|ACD98138.1| Pyruvate-formate lyase-activating enzyme [Bifidobacterium longum DJO10A] gi|227213643|gb|EEI81492.1| pyruvate-formate lyase-activating enzyme [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515126|gb|EEQ54993.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium longum subsp. infantis CCUG 52486] gi|316916311|gb|EFV37712.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium sp. 12_1_47BFAA] gi|320455715|dbj|BAJ66337.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum subsp. longum JCM 1217] gi|320460220|dbj|BAJ70840.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum subsp. infantis 157F] Length = 293 Score = 41.5 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 40/140 (28%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G +D + ++ Sbjct: 71 RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMIKKVDRYK 113 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG------TIEPPQGI 128 + +GGE ++Q + + + G ++T+G T E + I Sbjct: 114 DLFKATHGGITFSGGESMMQP--AFVSRVFHAAKEMGVHTCLDTSGFLNTNYTDEMLEDI 171 Query: 129 DWICVSPKAGCDLKIKGGQE 148 D +C+ L +K G E Sbjct: 172 D-LCL-------LDVKSGDE 183 >gi|189346205|ref|YP_001942734.1| molybdenum cofactor biosynthesis protein A [Chlorobium limicola DSM 245] gi|189340352|gb|ACD89755.1| molybdenum cofactor biosynthesis protein A [Chlorobium limicola DSM 245] Length = 332 Score = 41.5 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 21/97 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C ++ + G + AD+ I R T Sbjct: 26 CNL-----------RCTYCMSEEHECHSSVGHPDTLKT-ADVALLIRILAGLGVRKIRFT 73 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVE-----TNGTI 122 GGEPLL+ D+ L++ + +E TNG + Sbjct: 74 GGEPLLRNDIAELVRTAKD---TVGIETVSLTTNGVL 107 >gi|170769309|ref|ZP_02903762.1| pyruvate formate-lyase 1-activating enzyme [Escherichia albertii TW07627] gi|170121961|gb|EDS90892.1| pyruvate formate-lyase 1-activating enzyme [Escherichia albertii TW07627] Length = 265 Score = 41.5 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 46 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 90 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 91 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 127 >gi|160946408|ref|ZP_02093617.1| hypothetical protein PEPMIC_00368 [Parvimonas micra ATCC 33270] gi|158447524|gb|EDP24519.1| hypothetical protein PEPMIC_00368 [Parvimonas micra ATCC 33270] Length = 480 Score = 41.5 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 + + +CR C F+ + G N +I++ G V+TGGEPLL + Sbjct: 131 TKCNFRCRHC---FI-KNNSDGFTMNFLLWKRIIDKLCNQGLTS---VVVTGGEPLLYKE 183 Query: 101 V-PLIQALNKRGFEIAVETNG 120 + P++ +N + I + TNG Sbjct: 184 LTPILNYINDKKLNIHLLTNG 204 >gi|146311079|ref|YP_001176153.1| pyruvate formate lyase-activating enzyme 1 [Enterobacter sp. 638] gi|145317955|gb|ABP60102.1| pyruvate formate-lyase activating enzyme [Enterobacter sp. 638] Length = 246 Score = 41.5 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V++L + G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEELMKEVVTYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 72 GGVTASGGEAILQAEFVRDWFRACRKEGIHTCLDTNG 108 >gi|147921733|ref|YP_684447.1| arylsulfatase regulator [uncultured methanogenic archaeon RC-I] gi|110619843|emb|CAJ35121.1| arylsulfatase regulator [uncultured methanogenic archaeon RC-I] Length = 383 Score = 41.5 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 28/98 (28%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GC ++C +C ++D + D++ E Sbjct: 12 GCP-----------SKCHYC-----WSSDVNSPVMSLDTVKDIVA---WLKEFRDDNVTF 52 Query: 91 T--GGEPLL------QVDVPLIQA-LNKRGFEIAVETN 119 T GGEPLL + +PL+Q L R A++TN Sbjct: 53 TFHGGEPLLAGADFYKKALPLLQKGLKDRHVAFAMQTN 90 >gi|88602396|ref|YP_502574.1| radical SAM family protein [Methanospirillum hungatei JF-1] gi|88187858|gb|ABD40855.1| Radical SAM [Methanospirillum hungatei JF-1] Length = 495 Score = 41.5 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 13/101 (12%) Query: 32 CN-------LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEK 83 CN L + +R + C FC F + + DQ+ D++ Sbjct: 92 CNNHKSTTLLANVDLTNRCNLNCSFC---FANARACGYIYEPSYDQIKDMLTILRSEKPT 148 Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNGTI 122 GGEP L+ D+ +IQ GF ++ + TNG I Sbjct: 149 PAPAVQFAGGEPTLREDLFEIIQLAKSLGFMQVQLATNGLI 189 >gi|28901423|ref|NP_801078.1| putative pyruvate formate-lyase 3 activating enzyme [Vibrio parahaemolyticus RIMD 2210633] gi|153839557|ref|ZP_01992224.1| putative pyruvate formate-lyase 3-activating enzyme [Vibrio parahaemolyticus AQ3810] gi|260362976|ref|ZP_05775845.1| glycyl-radical enzyme activating protein family protein [Vibrio parahaemolyticus K5030] gi|260880263|ref|ZP_05892618.1| glycyl-radical enzyme activating protein family protein [Vibrio parahaemolyticus AN-5034] gi|28809970|dbj|BAC62911.1| putative pyruvate formate-lyase 3 activating enzyme [Vibrio parahaemolyticus RIMD 2210633] gi|149746915|gb|EDM57903.1| putative pyruvate formate-lyase 3-activating enzyme [Vibrio parahaemolyticus AQ3810] gi|308092032|gb|EFO41727.1| glycyl-radical enzyme activating protein family protein [Vibrio parahaemolyticus AN-5034] gi|308112431|gb|EFO49971.1| glycyl-radical enzyme activating protein family protein [Vibrio parahaemolyticus K5030] Length = 309 Score = 41.5 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 G D L +++ + ++ +GGEPL+Q ++ L + L++ A+E+ Sbjct: 110 GEAVKSDDLFEVLMKDKPFYDQSQGGVTFSGGEPLMQPNLVAELAERLHQNHVSTALESC 169 Query: 120 GTIEP 124 + Sbjct: 170 MHVPW 174 >gi|14591248|ref|NP_143325.1| hypothetical protein PH1458 [Pyrococcus horikoshii OT3] gi|3257882|dbj|BAA30565.1| 587aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 587 Score = 41.5 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 4/89 (4%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L + +R + C +C F +G ++Q+ ++ TGG Sbjct: 140 LINIVLTNRCNLSCWYC--FFYAREGEPIYEPTLEQIRMMLRNAKKEHPIGANAVQFTGG 197 Query: 94 EPLLQVDV-PLIQALNKRGF-EIAVETNG 120 EP L+ D+ +I+ + G+ I + T+G Sbjct: 198 EPTLRDDLIEIIKIAKEEGYDHIQLNTDG 226 >gi|46190413|ref|ZP_00206457.1| COG1180: Pyruvate-formate lyase-activating enzyme [Bifidobacterium longum DJO10A] gi|291517070|emb|CBK70686.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium longum subsp. longum F8] Length = 280 Score = 41.5 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 40/140 (28%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G +D + ++ Sbjct: 58 RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMIKKVDRYK 100 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG------TIEPPQGI 128 + +GGE ++Q + + + G ++T+G T E + I Sbjct: 101 DLFKATHGGITFSGGESMMQP--AFVSRVFHAAKEMGVHTCLDTSGFLNTNYTDEMLEDI 158 Query: 129 DWICVSPKAGCDLKIKGGQE 148 D +C+ L +K G E Sbjct: 159 D-LCL-------LDVKSGDE 170 >gi|331269793|ref|YP_004396285.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum BKT015925] gi|329126343|gb|AEB76288.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum BKT015925] Length = 308 Score = 41.2 bits (96), Expect = 0.082, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 10/113 (8%) Query: 47 CRFCDTD------FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 C C T + G ++ ++ +I+ EG L+GG+P Sbjct: 93 CSKCKTYECTNACYNNALKVSGKNMSITEIMKIIKRDLPYYRNEGG-ITLSGGDPTTFQS 151 Query: 101 ---VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 + L++A A+ET+ + ++I V+ D+K + K Sbjct: 152 SFALELLKACKDEFINTAIETSMSTSTEIIKEFIPVTDMFLADIKHMDTNKHK 204 >gi|157154815|ref|YP_001462103.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli E24377A] gi|301022943|ref|ZP_07186758.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 69-1] gi|157076845|gb|ABV16553.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E24377A] gi|294493276|gb|ADE92032.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli IHE3034] gi|300397284|gb|EFJ80822.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 69-1] gi|315296163|gb|EFU55471.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 16-3] gi|324113806|gb|EGC07781.1| pyruvate formate-lyase 1-activating enzyme [Escherichia fergusonii B253] gi|324116115|gb|EGC10039.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E1167] Length = 265 Score = 41.2 bits (96), Expect = 0.082, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 46 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 90 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 91 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 127 >gi|117623083|ref|YP_851996.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli APEC O1] gi|115512207|gb|ABJ00282.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli APEC O1] Length = 265 Score = 41.2 bits (96), Expect = 0.082, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 46 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 90 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 91 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 127 >gi|121594117|ref|YP_986013.1| molybdenum cofactor biosynthesis protein A [Acidovorax sp. JS42] gi|120606197|gb|ABM41937.1| GTP cyclohydrolase subunit MoaA [Acidovorax sp. JS42] Length = 378 Score = 41.2 bits (96), Expect = 0.082, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 15/148 (10%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C V + + ++ + ++ + R LTGGEPLL+ Sbjct: 48 DRCNFRCGYCMPKEVFDKHYRYLPHSDLLSFEEITRLARLFMAHGVRKIRLTGGEPLLRK 107 Query: 100 DVP-LIQALNK----RGF--EIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145 D+ L+ L + G ++ + TNG+ G+ + VS + D + Sbjct: 108 DLENLVAQLAELRTLEGRVPDLTLTTNGSLLARKARALKAAGLRRVTVSLDSLQDDVFRR 167 Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSL 173 ++ V E E + Sbjct: 168 MNDVDFPVADVLAGIEAAQAAGLEHIKV 195 >gi|317495598|ref|ZP_07953966.1| pyruvate formate-lyase 1-activating enzyme [Gemella moribillum M424] gi|316914412|gb|EFV35890.1| pyruvate formate-lyase 1-activating enzyme [Gemella moribillum M424] Length = 263 Score = 41.2 bits (96), Expect = 0.083, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 21/102 (20%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL-ADLIEEQWIT 80 VF F GC +C++C DT + V QL ++++ + Sbjct: 37 VF--FQGC-----------MLRCKYCHNPDT--WKMHNPDAKVVTVSQLTKEIVKYRNFF 81 Query: 81 GEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 EG ++GGE LLQ+D + L + L V+T G Sbjct: 82 EASEGGGVTVSGGESLLQLDFVLELFRQLKALDINTCVDTCG 123 >gi|222111161|ref|YP_002553425.1| molybdenum cofactor biosynthesis protein a [Acidovorax ebreus TPSY] gi|221730605|gb|ACM33425.1| molybdenum cofactor biosynthesis protein A [Acidovorax ebreus TPSY] Length = 378 Score = 41.2 bits (96), Expect = 0.083, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 15/148 (10%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C V + + ++ + ++ + R LTGGEPLL+ Sbjct: 48 DRCNFRCGYCMPKEVFDKHYRYLPHSDLLSFEEITRLARLFMAHGVRKIRLTGGEPLLRK 107 Query: 100 DVP-LIQALNK----RGF--EIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145 D+ L+ L + G ++ + TNG+ G+ + VS + D + Sbjct: 108 DLENLVAQLAELRTLEGRVPDLTLTTNGSLLARKARALKAAGLRRVTVSLDSLQDDVFRR 167 Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSL 173 ++ V E E + Sbjct: 168 MNDVDFPVADVLAGIEAAQAVGLEHIKV 195 >gi|70731475|ref|YP_261216.1| radical SAM domain-containing protein [Pseudomonas fluorescens Pf-5] gi|68345774|gb|AAY93380.1| radical SAM domain protein [Pseudomonas fluorescens Pf-5] Length = 477 Score = 41.2 bits (96), Expect = 0.083, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 50/135 (37%), Gaps = 41/135 (30%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GCNL C +C D D + + G + +D +E E R Sbjct: 110 TGCNL-----------SCTYCYKEDLD----KPSAGKKMGLDTAIASVEMLLQESPDEER 154 Query: 87 Y-CVLTGGEPLLQVDVPLIQA--------LNKRGFEIA--VETNGTIEPPQGIDW----- 130 Y V GGEPL + PLI+A G + + TN T+ + +D+ Sbjct: 155 YTVVFFGGEPL--SNRPLIEAMVDYCEQRFAAAGKFVEFVMTTNATLLTEEVVDYLNAHR 212 Query: 131 --ICVS---PKAGCD 140 + VS PK D Sbjct: 213 FGLSVSIDGPKTVHD 227 >gi|328953261|ref|YP_004370595.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109] gi|328453585|gb|AEB09414.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109] Length = 359 Score = 41.2 bits (96), Expect = 0.083, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 A+C FC F ++ + + D+L ++ + RY V TGGEPLL +P Sbjct: 28 ARCEFC--GFSRLKPQQWVMADPDRLCRGLK---VLARAGVRYIVFTGGEPLLYPHLP 80 >gi|297617592|ref|YP_003702751.1| radical SAM protein [Syntrophothermus lipocalidus DSM 12680] gi|297145429|gb|ADI02186.1| Radical SAM domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 339 Score = 41.2 bits (96), Expect = 0.083, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 4/75 (5%) Query: 49 FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQAL 107 FCD + N ++ +LI E G + + +GGEPL+ L Sbjct: 14 FCDHCYRDAGLKLSEELNTEEGKELIREIKKAG---FKIMIFSGGEPLMRHDIFELGDYA 70 Query: 108 NKRGFEIAVETNGTI 122 ++G + TNGT+ Sbjct: 71 RQQGLRPVLGTNGTL 85 >gi|238752406|ref|ZP_04613883.1| pyruvate formate-lyase 3-activating enzyme [Yersinia rohdei ATCC 43380] gi|238709339|gb|EEQ01580.1| pyruvate formate-lyase 3-activating enzyme [Yersinia rohdei ATCC 43380] Length = 299 Score = 41.2 bits (96), Expect = 0.083, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G ++D D + + G L+GGEP +Q V L+Q ++ G AVE+ Sbjct: 101 GTPIDIDATMDTLLRDLPFYRRSGGGVTLSGGEPFMQPAVAAELLQRCHQLGIHTAVES 159 >gi|237745124|ref|ZP_04575605.1| predicted protein [Fusobacterium sp. 7_1] gi|229432353|gb|EEO42565.1| predicted protein [Fusobacterium sp. 7_1] Length = 369 Score = 41.2 bits (96), Expect = 0.083, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 19/98 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C+ C + KG + + D+ + + + Sbjct: 17 CNL-----------RCKHC---YNAKHLKKG----IPETIDIEKTFSNLLKLNPDIITIQ 58 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGI 128 GGEPLL ++ LI L G ++ + TN T+ P I Sbjct: 59 GGEPLLVSNLENLILKLRNMGVQVYITTNATLLTPNRI 96 >gi|116686788|ref|YP_840035.1| radical SAM domain-containing protein [Burkholderia cenocepacia HI2424] gi|116652503|gb|ABK13142.1| Radical SAM domain protein [Burkholderia cenocepacia HI2424] Length = 214 Score = 41.2 bits (96), Expect = 0.084, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 25/86 (29%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC S +C C DT + GG VD + + W++G Sbjct: 25 FQGC-----------SIRCPGCISMDT-----WASAGGETTVDAVLAQV-RNWLSGATG- 66 Query: 86 RYCVLTGGEPLLQVD--VPLIQALNK 109 ++GGEP Q D + L+Q L K Sbjct: 67 --ITISGGEPFDQPDALIHLLQGLRK 90 >gi|288818520|ref|YP_003432868.1| coenzyme PQQ synthesis protein E [Hydrogenobacter thermophilus TK-6] gi|288787920|dbj|BAI69667.1| coenzyme PQQ synthesis protein E [Hydrogenobacter thermophilus TK-6] gi|308752110|gb|ADO45593.1| coenzyme PQQ biosynthesis protein E [Hydrogenobacter thermophilus TK-6] Length = 362 Score = 41.2 bits (96), Expect = 0.085, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 12/126 (9%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R + C +C + D+ +I E G + +TGGEP ++ D+ Sbjct: 17 RCNMHCWYCYNPQDLNEYAPQKELTTDEWRKVIREAAELG---IIHIHITGGEPTIRQDL 73 Query: 102 P-LIQALNKRGFEIAVETNGTIE--------PPQGIDWICVSPKAGCDLKIKGGQELKLV 152 P ++Q G + + TN T+ +G+D + VS +A E+K Sbjct: 74 PNIVQEAKNCGLYVNLITNITLYDKKYWEELVKKGVDHVQVSFQAHTKDLNDLIGEVKTY 133 Query: 153 FPQVNV 158 ++ + Sbjct: 134 EKKLKI 139 >gi|291456554|ref|ZP_06595944.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium breve DSM 20213] gi|291381831|gb|EFE89349.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium breve DSM 20213] Length = 280 Score = 41.2 bits (96), Expect = 0.085, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 40/140 (28%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G +D + ++ Sbjct: 58 RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMIKKVDRYK 100 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG------TIEPPQGI 128 + +GGE ++Q + + + G ++T+G T E + I Sbjct: 101 DLFKATHGGITFSGGESMMQP--AFVSRVFHAAKEMGVHTCLDTSGFLNTNYTDEMLEDI 158 Query: 129 DWICVSPKAGCDLKIKGGQE 148 D +C+ L +K G E Sbjct: 159 D-LCL-------LDVKSGDE 170 >gi|167765929|ref|ZP_02437982.1| hypothetical protein CLOSS21_00420 [Clostridium sp. SS2/1] gi|167712427|gb|EDS23006.1| hypothetical protein CLOSS21_00420 [Clostridium sp. SS2/1] gi|291559826|emb|CBL38626.1| glycyl-radical enzyme activating protein family [butyrate-producing bacterium SSC/2] Length = 302 Score = 41.2 bits (96), Expect = 0.085, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 48/145 (33%) Query: 22 RVAVFCRFSGCNLWS-----------GREQDRLSAQCRFC---------------DTDFV 55 R VF GC L G+++ +C C D V Sbjct: 22 RSTVF--LQGCPLRCPWCANPESQTIGKKRMYYEKKCTGCGRCLENCPNHALNVQDGKLV 79 Query: 56 GIQ------------------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 + G +V+++ + E+ G ++GGE + Sbjct: 80 CDKKLCTQCGNCQKACLNDAVSFSGIEMSVEEVKQAVLRDRDYYEESGGGVTISGGECFV 139 Query: 98 QVD--VPLIQALNKRGFEIAVETNG 120 Q D + L++A + AVET G Sbjct: 140 QFDGLMQLLKAFKEENLHTAVETCG 164 >gi|323700861|ref|ZP_08112773.1| Radical SAM domain protein [Desulfovibrio sp. ND132] gi|323460793|gb|EGB16658.1| Radical SAM domain protein [Desulfovibrio desulfuricans ND132] Length = 388 Score = 41.2 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 6/97 (6%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 C L + + C+ C G + + LI+ G + T Sbjct: 42 CRLIAWEVTRSCNLACKHC--RAEAHPEPYEGELSTAEAKALIDTFPDVG---SPIIIFT 96 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEPPQG 127 GGEP++ LI +G + NGT+ P+ Sbjct: 97 GGEPMMRHDVYELIAYAKDKGMRCVMAPNGTLITPET 133 >gi|126174286|ref|YP_001050435.1| radical SAM domain-containing protein [Shewanella baltica OS155] gi|125997491|gb|ABN61566.1| Radical SAM domain protein [Shewanella baltica OS155] Length = 300 Score = 41.2 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 17/105 (16%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCV 89 NL + S +C CDT + Y V+++ ++ Q Sbjct: 72 NLNNKPRIRWNSERCSQCDTCLAVCPKQASPKVTHYTVEEILGILHSQR----HFINGIT 127 Query: 90 LTGGEPLLQVDVPLIQALNK--------RGFEIAVETNGTIEPPQ 126 ++GGE LQ +P I AL + ++TNG++ Sbjct: 128 VSGGEASLQ--LPFIIALFQGIKASESLSNLSCMLDTNGSLSLTG 170 >gi|283787366|ref|YP_003367231.1| pyruvate formate-lyase 2 activating enzyme [Citrobacter rodentium ICC168] gi|282950820|emb|CBG90497.1| pyruvate formate-lyase 2 activating enzyme [Citrobacter rodentium ICC168] Length = 292 Score = 41.2 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 46/137 (33%), Gaps = 30/137 (21%) Query: 9 IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGR-----------EQDRLSAQCRFC-- 50 IF +L G+G VF F GC E R ++C C Sbjct: 24 IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRESKCLHCVP 78 Query: 51 ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 D D + G +D+L + + + G L+GGE L+Q Sbjct: 79 CLRDADECPSGAFERIGRDVTLDELEREVMKDDVFFRTSGGGVTLSGGEVLMQAPFATRF 138 Query: 104 IQALNKRGFEIAVETNG 120 + L + A+ET G Sbjct: 139 LHRLRRWDVRCAIETAG 155 >gi|297545376|ref|YP_003677678.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843151|gb|ADH61667.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 453 Score = 41.2 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 18/105 (17%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYC 88 GCN+ S + + + + +QL ++I+ +WI + Sbjct: 77 GCNMNCPYCYIPESYRRNY-------------QKMSYNQLEEIIDKLSKWINERGGIKRI 123 Query: 89 VLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 + GGEPLL ++ P+I+ K E ++TNGT+ + +I Sbjct: 124 IFHGGEPLLAKEIFFPIIEKYYKE-IEFGIQTNGTLLTEEDAAFI 167 >gi|56696384|ref|YP_166741.1| pyrroloquinoline quinone biosynthesis protein PqqE [Ruegeria pomeroyi DSS-3] gi|61214688|sp|Q5LTB4|PQQE_SILPO RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|56678121|gb|AAV94787.1| coenzyme PQQ synthesis protein E [Ruegeria pomeroyi DSS-3] Length = 374 Score = 41.2 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 6/89 (6%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R C +C K + A +E G + L+GGEP + D+ Sbjct: 26 RCPLACPYCSNPLALHG--KARELDTQTWARAFDEAAALGVLQLH---LSGGEPASRPDL 80 Query: 102 -PLIQALNKRGFEIAVETNGTIEPPQGID 129 L +A ++ G + T+G P +D Sbjct: 81 VELTRAAHEAGLYTNLITSGIGLTPARLD 109 >gi|326383193|ref|ZP_08204881.1| GTP cyclohydrolase subunit MoaA [Gordonia neofelifaecis NRRL B-59395] gi|326197943|gb|EGD55129.1| GTP cyclohydrolase subunit MoaA [Gordonia neofelifaecis NRRL B-59395] Length = 335 Score = 41.2 bits (96), Expect = 0.087, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 11/87 (12%) Query: 41 DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C + G R + +++ + LTGGEPLL+ Sbjct: 25 DRCNLRCTYC----MPADGVPWIPRPELLTSDEIVSLAVVFASLGILEIRLTGGEPLLRP 80 Query: 100 D-VPLIQALN----KRG-FEIAVETNG 120 D V +++ L +RG +++ TNG Sbjct: 81 DVVDVVRRLAAIEGERGPLRVSITTNG 107 >gi|270261183|ref|ZP_06189456.1| hypothetical protein SOD_a04080 [Serratia odorifera 4Rx13] gi|270044667|gb|EFA17758.1| hypothetical protein SOD_a04080 [Serratia odorifera 4Rx13] Length = 246 Score = 41.2 bits (96), Expect = 0.087, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 55/187 (29%), Gaps = 50/187 (26%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G V++L Sbjct: 25 VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKDTVAYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI--------EPPQGIDWI 131 G +GGE +LQ + +A + G ++TNG + E D + Sbjct: 68 NASGGGVTASGGEAILQAEFVRDWFRACQQEGINTCLDTNGFVRRYDPVIDELLDATDLV 127 Query: 132 CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191 + K D Q V N+ DF R+ + N I Y Sbjct: 128 MLDLKQMND-----------DIHQNLVGVSNHRTLDFARY--------LAKRNQRTWIRY 168 Query: 192 CFQNPKW 198 P W Sbjct: 169 VVV-PGW 174 >gi|320007254|gb|ADW02104.1| hopanoid biosynthesis associated radical SAM protein HpnH [Streptomyces flavogriseus ATCC 33331] Length = 339 Score = 41.2 bits (96), Expect = 0.087, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 38 CNLAC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + +++ L R + + TN + + ++ SP + I G +E Sbjct: 80 GGEPLMHPQIDEIVRQLVARKKYVFLCTN-AMLMRKKLEKFTPSPYFAFAVHIDGLRE 136 >gi|239816028|ref|YP_002944938.1| pyrroloquinoline quinone biosynthesis protein PqqE [Variovorax paradoxus S110] gi|239802605|gb|ACS19672.1| coenzyme PQQ biosynthesis protein E [Variovorax paradoxus S110] Length = 385 Score = 41.2 bits (96), Expect = 0.087, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R C FC DF + G + ++ E G + C Sbjct: 12 PLWLLAELTYRCPLHCVFCFNPVDFAQQENELG----TEDWLRVLREGRELGAVQ---CG 64 Query: 90 LTGGEPLLQVDVPLIQALNKR-GFEIAVETNG 120 L+GGEPLL+ D+ +I A R G+ + T+G Sbjct: 65 LSGGEPLLRDDLEIIIAEAARLGYYTNLLTSG 96 >gi|219669165|ref|YP_002459600.1| radical SAM protein [Desulfitobacterium hafniense DCB-2] gi|219539425|gb|ACL21164.1| Radical SAM domain protein [Desulfitobacterium hafniense DCB-2] Length = 441 Score = 41.2 bits (96), Expect = 0.087, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 23/117 (19%) Query: 31 GCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 GC G D R + CRFC R ++ Sbjct: 76 GCPYDCGLCADHWKQTCAALLEVTQRCNLNCRFC-----FADAGGSARDPSLEVLTRWFR 130 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGF-EIAVETNGTIEPPQGIDWI 131 + + L+GGEP L+ D+P I AL GF I V +NG + D++ Sbjct: 131 KVMEASGPT-NIQLSGGEPTLRDDLPEIVALGKSEGFDFIQVNSNG-LRLAAEKDYV 185 >gi|126660238|ref|ZP_01731354.1| molybdenum cofactor biosynthesis protein A [Cyanothece sp. CCY0110] gi|126618477|gb|EAZ89230.1| molybdenum cofactor biosynthesis protein A [Cyanothece sp. CCY0110] Length = 247 Score = 41.2 bits (96), Expect = 0.087, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 13/122 (10%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-P 102 S C FC + R+ D+L D I++ +G K GGEPL ++ Sbjct: 15 SKHCHFC---YNHSHHLGETRWQADELVDFIKDCAKSGTKA---VSFGGGEPLEYPNLFE 68 Query: 103 LIQALNKRGFEIAVETNGTI---EPPQGIDWICVSPKAGCDLKIK-GGQELKLVFPQVNV 158 ++ L F ++ +NG + + + I K + +E+K V QV + Sbjct: 69 VLSELQGVLFR-SITSNGLHLHGDLLEKL-VIANPDKVHLSIHYPEQKEEVKRVINQVKL 126 Query: 159 SP 160 Sbjct: 127 LD 128 >gi|91203746|emb|CAJ71399.1| similar to molybdenum cofactor biosynthesis protein A [Candidatus Kuenenia stuttgartiensis] Length = 355 Score = 41.2 bits (96), Expect = 0.087, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 15/98 (15%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDV-PL 103 +C +C DF+ Q + D L D + E G K Y G GEPLL D+ + Sbjct: 43 RCTYCALDFMEYQ---PRFLDKDVLNDRLSEMASLGLKSIMYA---GEGEPLLHRDIGEI 96 Query: 104 IQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134 I K G ++A+ TNG + + I WI VS Sbjct: 97 INHTKKVGIDVAITTNGVLLKEGLVGSTLENITWIKVS 134 >gi|210616788|ref|ZP_03291232.1| hypothetical protein CLONEX_03453 [Clostridium nexile DSM 1787] gi|210149656|gb|EEA80665.1| hypothetical protein CLONEX_03453 [Clostridium nexile DSM 1787] Length = 428 Score = 41.2 bits (96), Expect = 0.088, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 18/96 (18%) Query: 29 FSGC-NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 +GC NL QC FC T G Q + ++++ ++ + R Sbjct: 73 LTGCCNL-----------QCEFC-TMNSGPQVSTKHDLTLEEIRSVL--IPKLMQINPRK 118 Query: 88 CVLTGGEPLLQVDVPLIQALNKRGFE---IAVETNG 120 V+TGGEPL++ D+ I L + FE I ++TNG Sbjct: 119 VVITGGEPLMRRDLFEILDLFSQAFEKKCIVLQTNG 154 >gi|13541337|ref|NP_111025.1| tRNA-modifying enzyme [Thermoplasma volcanium GSS1] gi|14324721|dbj|BAB59648.1| hypothetical protein [Thermoplasma volcanium GSS1] Length = 312 Score = 41.2 bits (96), Expect = 0.088, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 48/143 (33%), Gaps = 40/143 (27%) Query: 30 SGC--NLWSGREQDRL----------SAQCRFC------DTDFVGIQGTKG--GRYNVDQ 69 GC N + G + + + C FC D+ + + ++ Q Sbjct: 37 QGCYKNTFYGIKSHQCIQMTPALNACTENCAFCWRFQGFDSMHISDEDDPEFILEESIKQ 96 Query: 70 LADLI----------EEQWITGEKEGRY-CVLTGGEPLLQVDV-PLIQALNKRGFEIAVE 117 LI +E W LTG EP L + LI A KRG + Sbjct: 97 HLKLISGFKGNPKVSKEIWEEATHPKHMAISLTG-EPTLYSRLGELIAAAKKRGISTFLV 155 Query: 118 TNGTIE-PPQGID------WICV 133 TNGT+ + +D ++ V Sbjct: 156 TNGTLPMVLEKLDPLPTQLYVTV 178 >gi|298252712|ref|ZP_06976506.1| pyruvate formate-lyase 1 activating enzyme [Gardnerella vaginalis 5-1] gi|297533076|gb|EFH71960.1| pyruvate formate-lyase 1 activating enzyme [Gardnerella vaginalis 5-1] Length = 293 Score = 41.2 bits (96), Expect = 0.088, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 28/135 (20%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G +D + ++ Sbjct: 71 RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMIKKVDRYQ 113 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130 + G +GGE ++Q + +A + G ++T+G T E ID Sbjct: 114 SLFKATGGGITFSGGESMMQPAFVSRVFRAAKEMGVHTCLDTSGFLNRNYTDEMIDDIDL 173 Query: 131 ICVSPKAGCDLKIKG 145 + K+G + K Sbjct: 174 CLLDVKSGTEETYKK 188 >gi|92118190|ref|YP_577919.1| radical SAM family protein [Nitrobacter hamburgensis X14] gi|91801084|gb|ABE63459.1| Radical SAM [Nitrobacter hamburgensis X14] Length = 389 Score = 41.2 bits (96), Expect = 0.088, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C R + D EE + Sbjct: 38 CNLAC--------AGCG----KIDYPDAILNRRMTAQECWDAAEECG------APMVAIP 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ ++ +++ L R +++ TN + + +D SP + + G +E Sbjct: 80 GGEPLIHKEIGEIVRGLVARKKFVSLCTN-ALLLEKKLDLFEPSPYLFFSVHLDGLKE 136 >gi|325914911|ref|ZP_08177243.1| GTP cyclohydrolase subunit MoaA [Xanthomonas vesicatoria ATCC 35937] gi|325538804|gb|EGD10468.1| GTP cyclohydrolase subunit MoaA [Xanthomonas vesicatoria ATCC 35937] Length = 344 Score = 41.2 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 16/102 (15%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 +C +C D R + DQL L+ G + R LTGGEPLL+ D+P Sbjct: 36 RCGYCMPADRVPDDYGFDAQQRLSFDQLETLVRAFVSVGVTKVR---LTGGEPLLRRDLP 92 Query: 103 -LIQALNK-RGFE-IAVETNGTIEPPQ-------GIDWICVS 134 LI L G E +A+ TNG + Q G+ I VS Sbjct: 93 TLITRLTAIAGIEDLALTTNGVLLARQATALRQAGLRRITVS 134 >gi|308272797|emb|CBX29401.1| hypothetical protein N47_J03820 [uncultured Desulfobacterium sp.] Length = 338 Score = 41.2 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 8/105 (7%) Query: 28 RFSGC--NLWSGREQDRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 R C +L + ++C C D +D+ I+ + Sbjct: 85 RTEKCTEDLRDVKPPIIDRSKCTLCMKCVDVCPQNAITRVSSVMTLDEAFSEIKSDDVFY 144 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124 G L+GGEPLL + L++ + AV+T+G ++ Sbjct: 145 RSSGGGMTLSGGEPLLHPKTALALLRLAKENSIHTAVDTSGFLDW 189 >gi|148381132|ref|YP_001255673.1| glycyl-radical activating family protein [Clostridium botulinum A str. ATCC 3502] gi|148290616|emb|CAL84745.1| putative pyruvate formate-lyase 2 activating enzyme [Clostridium botulinum A str. ATCC 3502] Length = 252 Score = 41.2 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 6/84 (7%) Query: 43 LSAQCRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 +C FC T+F + G ++ I + + E+ +GGEP+L Sbjct: 32 DEGKCNFCGKCTNFCPNNAREYVGKDLTPQEIIKEIIKDEVFYEQSSGGVTFSGGEPMLH 91 Query: 99 VDVP--LIQALNKRGFEIAVETNG 120 D +++ RG ++T+G Sbjct: 92 ADFINGILEECKVRGIHTTIDTSG 115 >gi|95928293|ref|ZP_01311041.1| Methyltransferase type 11 [Desulfuromonas acetoxidans DSM 684] gi|95135564|gb|EAT17215.1| Methyltransferase type 11 [Desulfuromonas acetoxidans DSM 684] Length = 1000 Score = 41.2 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 32/105 (30%), Positives = 39/105 (37%), Gaps = 25/105 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA--DLIEEQWITGEKEGRYCV 89 CNL C F G + D+LA ++I E R Sbjct: 91 CNLSC--------RHCLF-----------TSGPNSQDELATGEIIRRVDEASELGCRVFA 131 Query: 90 LTGGEPLLQVDVPLI--QALNKRGFEIAVETNG-TI-EPPQGIDW 130 LTGGEP + D I LN +AV TNG T+ GIDW Sbjct: 132 LTGGEPFVHPDFADIVRHILNTPSHHVAVLTNGMTLSHQLNGIDW 176 >gi|315649901|ref|ZP_07902983.1| molybdenum cofactor biosynthesis protein A [Paenibacillus vortex V453] gi|315274700|gb|EFU38082.1| molybdenum cofactor biosynthesis protein A [Paenibacillus vortex V453] Length = 334 Score = 41.2 bits (96), Expect = 0.090, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 8/91 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C G++ + + +++A ++ G + R LTGGEPL++ Sbjct: 22 DRCNLRCVYC-MPEEGMEFQPHDQIMSYEEIAAILRVLAPMGVSKVR---LTGGEPLVRK 77 Query: 100 DVP-LIQALNK-RGFE-IAVETNGTIEPPQG 127 D+ L++ + G + I++ TNG + P + Sbjct: 78 DLENLVRMIASIEGIQDISLTTNGIMLPSKA 108 >gi|282936076|gb|ADB04295.1| putative naphthyl-2-methyl-succinate synthase activating enzyme [bacterium enrichment culture clone N47] Length = 338 Score = 41.2 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 8/105 (7%) Query: 28 RFSGC--NLWSGREQDRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 R C +L + ++C C D +D+ I+ + Sbjct: 85 RTEKCTEDLRDVKPPIIDRSKCTLCMKCVDVCPQNAITRVSSVMTLDEAFSEIKSDDVFY 144 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124 G L+GGEPLL + L++ + AV+T+G ++ Sbjct: 145 RSSGGGMTLSGGEPLLHPKTALALLRLAKENSIHTAVDTSGFLDW 189 >gi|193212999|ref|YP_001998952.1| molybdenum cofactor biosynthesis protein A [Chlorobaculum parvum NCIB 8327] gi|193086476|gb|ACF11752.1| molybdenum cofactor biosynthesis protein A [Chlorobaculum parvum NCIB 8327] Length = 333 Score = 41.2 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + + + + + + + R T Sbjct: 31 CNL-----------RCTYC----LKNEEDADRKIDQLDADQTVAVIEVLAQMGIRKVRFT 75 Query: 92 GGEPLLQVDV-PLIQALNK-RGF-EIAVETNG 120 GGEPLL D+ L++ G + TNG Sbjct: 76 GGEPLLHPDIVELVRRAKATPGIDTVKFTTNG 107 >gi|152986331|ref|YP_001349180.1| molybdenum cofactor biosynthesis protein A [Pseudomonas aeruginosa PA7] gi|150961489|gb|ABR83514.1| molybdenum cofactor biosynthesis protein A [Pseudomonas aeruginosa PA7] Length = 331 Score = 41.2 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 62/175 (35%), Gaps = 34/175 (19%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ ++++L + + G + R +TGGEPL+ Sbjct: 23 DRCDFRCTYCMSEDMQFLPRD----QVLSLEELYAVADAFIGLGVRRIR---ITGGEPLV 75 Query: 98 QVDVP-LIQALNKRGFEIAVE-----TNGTIEPP-------QGIDWICV---SPKAGCDL 141 + + L+ L G +E TNG+ G+ + V S + Sbjct: 76 RKGIAGLLARL---GQRPELEDLAITTNGSQLRERAGELKAAGVRRLNVSLDSLRRERFA 132 Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL-AISYCFQN 195 L+ V + + E FER L + ++ L + Y N Sbjct: 133 AFTRSDRLEQVLDGIQAAREA----GFERIKLNCVVQKGRNDDEILDLVEYALAN 183 >gi|91788157|ref|YP_549109.1| molybdenum cofactor biosynthesis protein A [Polaromonas sp. JS666] gi|91697382|gb|ABE44211.1| GTP cyclohydrolase subunit MoaA [Polaromonas sp. JS666] Length = 375 Score = 41.2 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 33/138 (23%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + + +++ L + G ++ R LTGGE Sbjct: 49 DRCNFRCSYCMPREVFDKDYAFL--PQSSLLSFEEITRLAKIFVAHGVEKIR---LTGGE 103 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS------ 134 PLL+ + LI+ L K R +I + TN ++ G+ + VS Sbjct: 104 PLLRKHLEVLIEMLAKLQTPDGRPLDITLTTNASLLAKKAQALKDAGLQRVTVSLDGLDD 163 Query: 135 --PKAGCDLKIKGGQELK 150 + D+ LK Sbjct: 164 ATFRRMNDVDFPVADVLK 181 >gi|296242661|ref|YP_003650148.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermosphaera aggregans DSM 11486] gi|296095245|gb|ADG91196.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermosphaera aggregans DSM 11486] Length = 253 Score = 41.2 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 29/106 (27%) Query: 29 FSGCNLWSGREQDRLSAQ-----CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 F GCNL + A+ CR+ +D++ + + + + Sbjct: 28 FCGCNLKCPFCHNWRLAENDPGVCRW---------------ITIDEIVESLSTSLMFIDY 72 Query: 84 EGRYCVLTGGEPLLQVDVPLIQALNKRGFEI----AVETNGTIEPP 125 +TGGEPLLQ L + + G + ++ TN T++ P Sbjct: 73 LH----VTGGEPLLQ-WASLFKLFQEAGNSLGVKRSLNTNMTLKEP 113 >gi|294636920|ref|ZP_06715247.1| pyruvate formate-lyase 1-activating enzyme [Edwardsiella tarda ATCC 23685] gi|291089873|gb|EFE22434.1| pyruvate formate-lyase 1-activating enzyme [Edwardsiella tarda ATCC 23685] Length = 246 Score = 41.2 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V++L G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKDTVTYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A G ++TNG Sbjct: 72 GGVTASGGEAMLQAEFVRDWFRACKAEGIHTCLDTNG 108 >gi|283852323|ref|ZP_06369594.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfovibrio sp. FW1012B] gi|283572280|gb|EFC20269.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfovibrio sp. FW1012B] Length = 232 Score = 41.2 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 35/126 (27%), Gaps = 32/126 (25%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY-- 87 GC C +C D + G Sbjct: 28 QGCP-----------WGCPYC-------HNEPLREITDRTERDGASVLAWLAGRRGLLDA 69 Query: 88 CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDL 141 V +GGEP LQ + ++ A+ GF++ + T G DW+ G D+ Sbjct: 70 VVFSGGEPTLQEGLGGMLGAVRDLGFKVGLHTTGMFPQALERVLPLCDWV------GLDI 123 Query: 142 KIKGGQ 147 K Sbjct: 124 KAPRAD 129 >gi|159904713|ref|YP_001548375.1| molybdenum cofactor biosynthesis protein A [Methanococcus maripaludis C6] gi|226704823|sp|A9A661|MOAA_METM6 RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|159886206|gb|ABX01143.1| molybdenum cofactor biosynthesis protein A [Methanococcus maripaludis C6] Length = 298 Score = 41.2 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 28/119 (23%) Query: 28 RFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 R S CNL +C +C G G + D++ +++ E Sbjct: 13 RLSITPKCNL-----------KCFYC--HKEGRNEEHGKLMSADEIVKIVKSSL---EFG 56 Query: 85 GRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNGTI-------EPPQGIDWICVS 134 R ++GGEPLL+ D+P +I+ + + I++ TNG + G+D + VS Sbjct: 57 VRKIKISGGEPLLRTDLPKIIENIKDDQIKDISLTTNGILLEKYAQKLKDAGLDRVNVS 115 >gi|89894729|ref|YP_518216.1| hypothetical protein DSY1983 [Desulfitobacterium hafniense Y51] gi|89334177|dbj|BAE83772.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 437 Score = 41.2 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 23/117 (19%) Query: 31 GCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 GC G D R + CRFC R ++ Sbjct: 72 GCPYDCGLCADHWKQTCAALLEVTQRCNLNCRFC-----FADAGGSARDPSLEVLTRWFR 126 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGF-EIAVETNGTIEPPQGIDWI 131 + + L+GGEP L+ D+P I AL GF I V +NG + D++ Sbjct: 127 KVMEASGPT-NIQLSGGEPTLRDDLPEIVALGKSEGFDFIQVNSNG-LRLAAEKDYV 181 >gi|299133453|ref|ZP_07026647.1| hopanoid biosynthesis associated radical SAM protein HpnH [Afipia sp. 1NLS2] gi|298591289|gb|EFI51490.1| hopanoid biosynthesis associated radical SAM protein HpnH [Afipia sp. 1NLS2] Length = 396 Score = 41.2 bits (96), Expect = 0.093, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C R + + D EE + Sbjct: 38 CNLAC--------AGCG----KIDYPDAILNRRMSAQECWDAAEECG------APMVAIP 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ ++ +++ L R +++ TN + + +D SP + + G +E Sbjct: 80 GGEPLIHKEIGEIVRGLVARKKFVSLCTN-ALLLEKKLDLFEPSPYLFFSVHLDGLKE 136 >gi|331651920|ref|ZP_08352939.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M718] gi|331050198|gb|EGI22256.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M718] Length = 255 Score = 41.2 bits (96), Expect = 0.094, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 36 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 80 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 81 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 117 >gi|283853117|ref|ZP_06370372.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B] gi|283571515|gb|EFC19520.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B] Length = 453 Score = 41.2 bits (96), Expect = 0.094, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 18/91 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C F V LAD I L+ Sbjct: 102 CNL-----------ACPVC---FARSGEAPAPDPTVGALADRFAR--IFAATGPVNVQLS 145 Query: 92 GGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120 GGEP ++ D+P ++ A GF + V TNG Sbjct: 146 GGEPTVRADLPAVVAACRAAGFAFVQVNTNG 176 >gi|78185836|ref|YP_378270.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp. CC9902] gi|123580926|sp|Q3AVP9|MOAA_SYNS9 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|78170130|gb|ABB27227.1| GTP cyclohydrolase subunit MoaA [Synechococcus sp. CC9902] Length = 345 Score = 41.2 bits (96), Expect = 0.094, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 42/124 (33%), Gaps = 34/124 (27%) Query: 27 CRF---SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 R + CNL C +C L D + + Sbjct: 18 LRLSLTARCNL-----------ACPYC-----CPDSRDPEGM--LDLQDQLRLIRVACSL 59 Query: 84 EGRYCVLTGGEPLLQV-DVPLIQAL---NKRGF-EIAVETNGTIEPPQ--------GIDW 130 LTGGEPLL PL+ A+ G E+A+ TNG + P+ G+D Sbjct: 60 GVHTVRLTGGEPLLSDRLEPLLAAIALDRPAGLKELALTTNGVLLSPERALRLKCAGLDR 119 Query: 131 ICVS 134 I +S Sbjct: 120 ITIS 123 >gi|315925471|ref|ZP_07921682.1| radical SAM domain protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315621372|gb|EFV01342.1| radical SAM domain protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 475 Score = 41.2 bits (96), Expect = 0.095, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 16/98 (16%) Query: 31 GCNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEG 85 GCN+ D SA C C G + N+ D++ D+IE+ G Sbjct: 103 GCNVPWAILLDPTSACNLHCTGC------WAAEYGNKLNLTFDEIDDIIEQGKQLGVFMY 156 Query: 86 RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE-TNGTI 122 + TGGEPL++ D LI+ K + TNGT+ Sbjct: 157 ---IYTGGEPLVRRDD-LIKLCEKHSDCTFLSFTNGTL 190 >gi|289596878|ref|YP_003483574.1| molybdenum cofactor biosynthesis protein A [Aciduliprofundum boonei T469] gi|289534665|gb|ADD09012.1| molybdenum cofactor biosynthesis protein A [Aciduliprofundum boonei T469] Length = 308 Score = 41.2 bits (96), Expect = 0.095, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 37/118 (31%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C G D++ +++ I E + R T Sbjct: 20 CNL-----------NCFYC--HREGEWHRHHSEMTPDEIERILK---IARELDIRKVKFT 63 Query: 92 GGEPLLQVDV--------PLIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134 GGEPL + D+ PL+ ++++ TNGT+ G+D + VS Sbjct: 64 GGEPLCRNDIVEIVLKSAPLMDR------DVSLTTNGTLLSKYAYELKEVGLDRVNVS 115 >gi|75392923|sp|Q84F14|HPDA_CLODI RecName: Full=4-hydroxyphenylacetate decarboxylase activating enzyme; Short=Hpd-AE gi|28300943|emb|CAD65891.1| HpdA protein [Clostridium difficile] Length = 316 Score = 41.2 bits (96), Expect = 0.095, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 Y VD+L +I+ + +GGEPLLQ + ++ ++ A+ET+ Sbjct: 117 YTVDELVQVIKRD-SNNWRSNGGVTFSGGEPLLQHEFLHEVLLKCHEVNVHTAIETS 172 >gi|27461256|gb|AAM54729.1| glycerol dehydratase activator [Clostridium butyricum] Length = 304 Score = 41.2 bits (96), Expect = 0.095, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 +G Y+V+ + +++ + + L+GGE LLQ D V L++ G+ A+ET Sbjct: 104 EGRNYSVEDVIKELKKDSVQYRRSNGGITLSGGEVLLQPDFAVELLKECKSYGWHTAIET 163 >gi|22298906|ref|NP_682153.1| molybdenum cofactor biosynthesis protein A [Thermosynechococcus elongatus BP-1] gi|22295087|dbj|BAC08915.1| molybdenum cofactor biosynthesis protein A [Thermosynechococcus elongatus BP-1] Length = 332 Score = 41.2 bits (96), Expect = 0.095, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 12/90 (13%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR + +C +C D F+ Q + A ++ E G + R LTGGEPLL Sbjct: 40 DRCNLRCMYCMPVDAAFMPPQTY----LTPTEYATIVAELVELGIESVR---LTGGEPLL 92 Query: 98 QVDV-PLIQALNKRGF-EIAVETNGTIEPP 125 + + ++ AL G ++++ TNG P Sbjct: 93 RAEFAEIVAALVAAGVPQLSLTTNGIRLVP 122 >gi|332158286|ref|YP_004423565.1| molybdenum cofactor biosynthesis protein A [Pyrococcus sp. NA2] gi|331033749|gb|AEC51561.1| molybdenum cofactor biosynthesis protein A [Pyrococcus sp. NA2] Length = 306 Score = 41.2 bits (96), Expect = 0.095, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 18/91 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C QG D++ +++ I R LT Sbjct: 21 CNL-----------SCFYC---HREGQGEGEREMTADEIERIVK---IASRLGIRKVKLT 63 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 GGEP ++ D + +++ + ++++ TNGT Sbjct: 64 GGEPTIRKDIIEIVRKIRPYVVDLSLTTNGT 94 >gi|170681252|ref|YP_001744269.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli SMS-3-5] gi|170518970|gb|ACB17148.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli SMS-3-5] Length = 246 Score = 41.2 bits (96), Expect = 0.095, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 72 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 108 >gi|189425044|ref|YP_001952221.1| methyltransferase type 11 [Geobacter lovleyi SZ] gi|189421303|gb|ACD95701.1| Methyltransferase type 11 [Geobacter lovleyi SZ] Length = 1000 Score = 41.2 bits (96), Expect = 0.095, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 58/171 (33%), Gaps = 33/171 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + C F +G + ++ QL I++ G R LT Sbjct: 91 CNLSC--------SHCLF------SSGPDQGRQLSLQQLKQHIDDAAAQG---CRLFALT 133 Query: 92 GGEPLLQVDV-PLI-QALNKRGFEIAVETNG-TIEPPQGIDW--------ICVSPKAGCD 140 GGEPL+ D LI L IAV TNG ++ DW I + + Sbjct: 134 GGEPLVHPDFAELIGHILAIPDSRIAVLTNGLSVADKLAADWPRQRIHLQISLDGRPEHH 193 Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191 ++G K + Q+ ++ F+L + + Y Sbjct: 194 DLLRGAGSFKQLEQQL-----TWLQQQHWHFTLSCCVTKENARDLTWLVDY 239 >gi|21227495|ref|NP_633417.1| molybdenum cofactor biosynthesis protein A [Methanosarcina mazei Go1] gi|24211981|sp|Q8PX29|MOAA_METMA RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|20905871|gb|AAM31089.1| Molybdenum cofactor biosynthesis protein A [Methanosarcina mazei Go1] Length = 334 Score = 41.2 bits (96), Expect = 0.095, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 21/111 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + A+C C G G + + + +I E + R + Sbjct: 40 CNLSCMYCHN-EGAECCTC--------GPVGNEMSPELICSIIRE---AAKFGVRKVKFS 87 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134 GGEPL + D I A E++ TNG T++ G+D I VS Sbjct: 88 GGEPLFRKDFEDILACLPPLKEVSATTNGILLEKRAKTLKA-AGLDRINVS 137 >gi|148259214|ref|YP_001233341.1| radical SAM domain-containing protein [Acidiphilium cryptum JF-5] gi|146400895|gb|ABQ29422.1| Radical SAM domain protein [Acidiphilium cryptum JF-5] Length = 579 Score = 41.2 bits (96), Expect = 0.095, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 14/89 (15%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL S + D + G R +D+ AD E G LT Sbjct: 309 CNLACEGCYIESSPRN-----DRLAWLRLDGFRRVLDEAADRHPELREIG--------LT 355 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETN 119 GGEP + D+ LI RG+ + V TN Sbjct: 356 GGEPFMNPDIEALIGMALDRGYRVLVLTN 384 >gi|303328447|ref|ZP_07358884.1| putative pyruvate formate-lyase activating enzyme [Desulfovibrio sp. 3_1_syn3] gi|302861441|gb|EFL84378.1| putative pyruvate formate-lyase activating enzyme [Desulfovibrio sp. 3_1_syn3] Length = 306 Score = 41.2 bits (96), Expect = 0.096, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119 G Y++D++ I++ + G L+GGE L Q V L G A+ET+ Sbjct: 102 GREYSLDEVLVRIKKDMLFYRNSGGGVTLSGGEVLSQHAFAVELCGRCAALGIHTAIETS 161 Query: 120 G 120 G Sbjct: 162 G 162 >gi|292491348|ref|YP_003526787.1| hopanoid biosynthesis associated radical SAM protein HpnH [Nitrosococcus halophilus Nc4] gi|291579943|gb|ADE14400.1| hopanoid biosynthesis associated radical SAM protein HpnH [Nitrosococcus halophilus Nc4] Length = 371 Score = 41.2 bits (96), Expect = 0.096, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C + R +V + D ++E + Sbjct: 38 CNLAC--------AGCG----KIDHPEEILNKRLSVQECLDAVDECG------APIVSIP 79 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPLL ++P +++ + +R + + TN + + D+ SP + + G +E Sbjct: 80 GGEPLLHKEMPEIVEGIIQRKKFVYLCTNALLLAKRLKDY-TPSPYLTFSVHLDGNRE 136 >gi|253559429|gb|ACT32393.1| coenzyme PQQ biosynthesis protein PqqE [Pseudomonas fluorescens] Length = 389 Score = 41.2 bits (96), Expect = 0.096, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C +G + +Q + E G + + + Sbjct: 23 PLWLLAELTYRCPLQCPYCSNPLDF--AEQGKELSTEQWFKVFREAREMGAAQLGF---S 77 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI + GF + T+G Sbjct: 78 GGEPLVRQDLAELIGEARRLGFYTNLITSG 107 >gi|210060915|pdb|3C8F|A Chain A, 4fe-4s-Pyruvate Formate-Lyase Activating Enzyme With Partially Disordered Adomet gi|210060916|pdb|3CB8|A Chain A, 4fe-4s-Pyruvate Formate-Lyase Activating Enzyme In Complex With Adomet And A Peptide Substrate Length = 245 Score = 41.2 bits (96), Expect = 0.096, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 26 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 70 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 71 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 107 >gi|187734201|ref|YP_001880903.1| pyruvate formate lyase-activating enzyme 1 [Shigella boydii CDC 3083-94] gi|227884133|ref|ZP_04001938.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 83972] gi|237707110|ref|ZP_04537591.1| pyruvate formate-lyase 1 activating enzyme [Escherichia sp. 3_2_53FAA] gi|293404208|ref|ZP_06648202.1| pflA [Escherichia coli FVEC1412] gi|293414182|ref|ZP_06656831.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B185] gi|293433199|ref|ZP_06661627.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B088] gi|298379988|ref|ZP_06989593.1| pflA [Escherichia coli FVEC1302] gi|300816995|ref|ZP_07097214.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 107-1] gi|300823641|ref|ZP_07103768.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 119-7] gi|300901670|ref|ZP_07119730.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 198-1] gi|300902940|ref|ZP_07120885.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 84-1] gi|300921063|ref|ZP_07137448.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 115-1] gi|300929596|ref|ZP_07145058.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 187-1] gi|300937598|ref|ZP_07152408.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 21-1] gi|300949737|ref|ZP_07163715.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 116-1] gi|300955451|ref|ZP_07167825.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 175-1] gi|300978474|ref|ZP_07174289.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 45-1] gi|300983149|ref|ZP_07176463.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 200-1] gi|301047840|ref|ZP_07194891.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 185-1] gi|301302491|ref|ZP_07208622.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 124-1] gi|301325772|ref|ZP_07219222.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 78-1] gi|301643421|ref|ZP_07243469.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 146-1] gi|309795288|ref|ZP_07689706.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 145-7] gi|331641428|ref|ZP_08342563.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H736] gi|331672441|ref|ZP_08373231.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA280] gi|331676690|ref|ZP_08377386.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H591] gi|26107327|gb|AAN79510.1|AE016758_114 Pyruvate formate-lyase 1 activating enzyme [Escherichia coli CFT073] gi|91071577|gb|ABE06458.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli UTI89] gi|187431193|gb|ACD10467.1| pyruvate formate-lyase 1-activating enzyme [Shigella boydii CDC 3083-94] gi|226898320|gb|EEH84579.1| pyruvate formate-lyase 1 activating enzyme [Escherichia sp. 3_2_53FAA] gi|227838885|gb|EEJ49351.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 83972] gi|291324018|gb|EFE63440.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B088] gi|291428794|gb|EFF01819.1| pflA [Escherichia coli FVEC1412] gi|291434240|gb|EFF07213.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B185] gi|298279686|gb|EFI21194.1| pflA [Escherichia coli FVEC1302] gi|300300299|gb|EFJ56684.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 185-1] gi|300306983|gb|EFJ61503.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 200-1] gi|300317674|gb|EFJ67458.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 175-1] gi|300354963|gb|EFJ70833.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 198-1] gi|300405082|gb|EFJ88620.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 84-1] gi|300409651|gb|EFJ93189.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 45-1] gi|300411986|gb|EFJ95296.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 115-1] gi|300450885|gb|EFK14505.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 116-1] gi|300457377|gb|EFK20870.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 21-1] gi|300462433|gb|EFK25926.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 187-1] gi|300523841|gb|EFK44910.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 119-7] gi|300530347|gb|EFK51409.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 107-1] gi|300842330|gb|EFK70090.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 124-1] gi|300847444|gb|EFK75204.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 78-1] gi|301078135|gb|EFK92941.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 146-1] gi|308120938|gb|EFO58200.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 145-7] gi|315257942|gb|EFU37910.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 85-1] gi|315287536|gb|EFU46947.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 110-3] gi|315291232|gb|EFU50592.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 153-1] gi|324009847|gb|EGB79066.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 57-2] gi|324012960|gb|EGB82179.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 60-1] gi|324019090|gb|EGB88309.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 117-3] gi|331038226|gb|EGI10446.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H736] gi|331070347|gb|EGI41712.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA280] gi|331075379|gb|EGI46677.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H591] gi|332104545|gb|EGJ07891.1| pyruvate formate-lyase 1 activating enzyme [Shigella sp. D9] Length = 255 Score = 41.2 bits (96), Expect = 0.096, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 36 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 80 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 81 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 117 >gi|15800763|ref|NP_286777.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O157:H7 EDL933] gi|15830239|ref|NP_309012.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O157:H7 str. Sakai] gi|16128869|ref|NP_415422.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str. K-12 substr. MG1655] gi|30062437|ref|NP_836608.1| pyruvate formate lyase-activating enzyme 1 [Shigella flexneri 2a str. 2457T] gi|56479766|ref|NP_706820.2| pyruvate formate lyase-activating enzyme 1 [Shigella flexneri 2a str. 301] gi|74311458|ref|YP_309877.1| pyruvate formate lyase-activating enzyme 1 [Shigella sonnei Ss046] gi|82544640|ref|YP_408587.1| pyruvate formate lyase-activating enzyme 1 [Shigella boydii Sb227] gi|82777578|ref|YP_403927.1| pyruvate formate lyase-activating enzyme 1 [Shigella dysenteriae Sd197] gi|89107752|ref|AP_001532.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str. K-12 substr. W3110] gi|110641099|ref|YP_668829.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli 536] gi|110804910|ref|YP_688430.1| pyruvate formate lyase-activating enzyme 1 [Shigella flexneri 5 str. 8401] gi|157160424|ref|YP_001457742.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli HS] gi|161486262|ref|NP_752967.2| pyruvate formate lyase-activating enzyme 1 [Escherichia coli CFT073] gi|162138459|ref|YP_539989.2| pyruvate formate lyase-activating enzyme 1 [Escherichia coli UTI89] gi|168752115|ref|ZP_02777137.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4113] gi|168756994|ref|ZP_02782001.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4401] gi|168762963|ref|ZP_02787970.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4501] gi|168769896|ref|ZP_02794903.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4486] gi|168776246|ref|ZP_02801253.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4196] gi|168783813|ref|ZP_02808820.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4076] gi|168787331|ref|ZP_02812338.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC869] gi|168801415|ref|ZP_02826422.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC508] gi|170020696|ref|YP_001725650.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli ATCC 8739] gi|170080560|ref|YP_001729880.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str. K-12 substr. DH10B] gi|188492165|ref|ZP_02999435.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 53638] gi|191172048|ref|ZP_03033592.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli F11] gi|193064616|ref|ZP_03045695.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E22] gi|193070729|ref|ZP_03051664.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E110019] gi|194428375|ref|ZP_03060916.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B171] gi|194434403|ref|ZP_03066666.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae 1012] gi|194438701|ref|ZP_03070788.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 101-1] gi|195939563|ref|ZP_03084945.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O157:H7 str. EC4024] gi|208805965|ref|ZP_03248302.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4206] gi|208815370|ref|ZP_03256549.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4045] gi|208822382|ref|ZP_03262701.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4042] gi|209400841|ref|YP_002269574.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4115] gi|209918152|ref|YP_002292236.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli SE11] gi|215486027|ref|YP_002328458.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O127:H6 str. E2348/69] gi|217324861|ref|ZP_03440945.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. TW14588] gi|218548419|ref|YP_002382210.1| pyruvate formate lyase-activating enzyme 1 [Escherichia fergusonii ATCC 35469] gi|218553488|ref|YP_002386401.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli IAI1] gi|218557807|ref|YP_002390720.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli S88] gi|218688742|ref|YP_002396954.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli ED1a] gi|218694375|ref|YP_002402042.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli 55989] gi|218700580|ref|YP_002408209.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli IAI39] gi|218704329|ref|YP_002411848.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli UMN026] gi|238900160|ref|YP_002925956.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli BW2952] gi|253774069|ref|YP_003036900.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161016|ref|YP_003044124.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli B str. REL606] gi|254792101|ref|YP_003076938.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O157:H7 str. TW14359] gi|256020970|ref|ZP_05434835.1| pyruvate formate lyase-activating enzyme 1 [Shigella sp. D9] gi|256023397|ref|ZP_05437262.1| pyruvate formate lyase-activating enzyme 1 [Escherichia sp. 4_1_40B] gi|260843152|ref|YP_003220930.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli O103:H2 str. 12009] gi|260854193|ref|YP_003228084.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli O26:H11 str. 11368] gi|260867074|ref|YP_003233476.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli O111:H- str. 11128] gi|261227405|ref|ZP_05941686.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O157:H7 str. FRIK2000] gi|261256172|ref|ZP_05948705.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O157:H7 str. FRIK966] gi|291281903|ref|YP_003498721.1| Pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7 str. CB9615] gi|293409279|ref|ZP_06652855.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B354] gi|297519591|ref|ZP_06937977.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli OP50] gi|306812645|ref|ZP_07446838.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli NC101] gi|307137531|ref|ZP_07496887.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli H736] gi|307311711|ref|ZP_07591351.1| pyruvate formate-lyase activating enzyme [Escherichia coli W] gi|309784023|ref|ZP_07678667.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae 1617] gi|312969032|ref|ZP_07783239.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 2362-75] gi|312971030|ref|ZP_07785209.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 1827-70] gi|331656972|ref|ZP_08357934.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA206] gi|331662315|ref|ZP_08363238.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA143] gi|331667278|ref|ZP_08368143.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA271] gi|331682409|ref|ZP_08383028.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H299] gi|71159621|sp|P0A9N6|PFLA_ECO57 RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName: Full=Formate-C-acetyltransferase-activating enzyme 1; AltName: Full=PFL-activating enzyme 1 gi|71159622|sp|P0A9N5|PFLA_ECOL6 RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName: Full=Formate-C-acetyltransferase-activating enzyme 1; AltName: Full=PFL-activating enzyme 1 gi|71159623|sp|P0A9N4|PFLA_ECOLI RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName: Full=Formate-C-acetyltransferase-activating enzyme 1; AltName: Full=PFL-activating enzyme 1 gi|71159624|sp|P0A9N7|PFLA_SHIFL RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName: Full=Formate-C-acetyltransferase-activating enzyme 1; AltName: Full=PFL-activating enzyme 1 gi|12514065|gb|AAG55387.1|AE005279_7 pyruvate formate lyase activating enzyme 1 [Escherichia coli O157:H7 str. EDL933] gi|42371|emb|CAA30829.1| unnamed protein product [Escherichia coli K-12] gi|1787130|gb|AAC73988.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str. K-12 substr. MG1655] gi|4062478|dbj|BAA35637.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str. K12 substr. W3110] gi|13360444|dbj|BAB34408.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli O157:H7 str. Sakai] gi|30040683|gb|AAP16414.1| pyruvate formate lyase activating enzyme 1 [Shigella flexneri 2a str. 2457T] gi|56383317|gb|AAN42527.2| pyruvate formate lyase activating enzyme 1 [Shigella flexneri 2a str. 301] gi|73854935|gb|AAZ87642.1| pyruvate formate lyase activating enzyme 1 [Shigella sonnei Ss046] gi|81241726|gb|ABB62436.1| pyruvate formate lyase activating enzyme 1 [Shigella dysenteriae Sd197] gi|81246051|gb|ABB66759.1| pyruvate formate lyase activating enzyme 1 [Shigella boydii Sb227] gi|110342691|gb|ABG68928.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli 536] gi|110614458|gb|ABF03125.1| pyruvate formate lyase activating enzyme 1 [Shigella flexneri 5 str. 8401] gi|157066104|gb|ABV05359.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli HS] gi|169755624|gb|ACA78323.1| pyruvate formate-lyase activating enzyme [Escherichia coli ATCC 8739] gi|169888395|gb|ACB02102.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str. K-12 substr. DH10B] gi|187768338|gb|EDU32182.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4196] gi|188013962|gb|EDU52084.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4113] gi|188487364|gb|EDU62467.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 53638] gi|188998898|gb|EDU67884.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4076] gi|189355900|gb|EDU74319.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4401] gi|189361165|gb|EDU79584.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4486] gi|189366831|gb|EDU85247.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4501] gi|189372637|gb|EDU91053.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC869] gi|189376430|gb|EDU94846.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC508] gi|190907575|gb|EDV67170.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli F11] gi|192927673|gb|EDV82288.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E22] gi|192955922|gb|EDV86390.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E110019] gi|194413590|gb|EDX29871.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B171] gi|194417387|gb|EDX33493.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae 1012] gi|194422333|gb|EDX38333.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 101-1] gi|208725766|gb|EDZ75367.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4206] gi|208732018|gb|EDZ80706.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4045] gi|208737867|gb|EDZ85550.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4042] gi|209162241|gb|ACI39674.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4115] gi|209748614|gb|ACI72614.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli] gi|209748616|gb|ACI72615.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli] gi|209748618|gb|ACI72616.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli] gi|209911411|dbj|BAG76485.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli SE11] gi|215264099|emb|CAS08443.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli O127:H6 str. E2348/69] gi|217321082|gb|EEC29506.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. TW14588] gi|218351107|emb|CAU96811.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli 55989] gi|218355960|emb|CAQ88576.1| pyruvate formate lyase activating enzyme 1 [Escherichia fergusonii ATCC 35469] gi|218360256|emb|CAQ97806.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli IAI1] gi|218364576|emb|CAR02262.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli S88] gi|218370566|emb|CAR18373.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli IAI39] gi|218426306|emb|CAR07131.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli ED1a] gi|218431426|emb|CAR12304.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli UMN026] gi|222032633|emb|CAP75372.1| Pyruvate formate-lyase 1-activating enzyme [Escherichia coli LF82] gi|238863358|gb|ACR65356.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli BW2952] gi|242376717|emb|CAQ31430.1| pyruvate formate-lyase activating enzyme [Escherichia coli BL21(DE3)] gi|253325113|gb|ACT29715.1| pyruvate formate-lyase activating enzyme [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972917|gb|ACT38588.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli B str. REL606] gi|253977131|gb|ACT42801.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli BL21(DE3)] gi|254591501|gb|ACT70862.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli O157:H7 str. TW14359] gi|257752842|dbj|BAI24344.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli O26:H11 str. 11368] gi|257758299|dbj|BAI29796.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli O103:H2 str. 12009] gi|257763430|dbj|BAI34925.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli O111:H- str. 11128] gi|260449952|gb|ACX40374.1| pyruvate formate-lyase activating enzyme [Escherichia coli DH1] gi|281178033|dbj|BAI54363.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli SE15] gi|281600262|gb|ADA73246.1| Pyruvate formate lyase-activating enzyme 1 [Shigella flexneri 2002017] gi|284920753|emb|CBG33816.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli 042] gi|290761776|gb|ADD55737.1| Pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7 str. CB9615] gi|291469747|gb|EFF12231.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B354] gi|305853408|gb|EFM53847.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli NC101] gi|306908266|gb|EFN38765.1| pyruvate formate-lyase activating enzyme [Escherichia coli W] gi|307552741|gb|ADN45516.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli ABU 83972] gi|307627671|gb|ADN71975.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli UM146] gi|308928166|gb|EFP73629.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae 1617] gi|309701178|emb|CBJ00478.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli ETEC H10407] gi|310336791|gb|EFQ01958.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 1827-70] gi|312286434|gb|EFR14347.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 2362-75] gi|312945422|gb|ADR26249.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O83:H1 str. NRG 857C] gi|313648452|gb|EFS12895.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri 2a str. 2457T] gi|315060187|gb|ADT74514.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli W] gi|315135550|dbj|BAJ42709.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli DH1] gi|315619096|gb|EFU99676.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 3431] gi|320173243|gb|EFW48452.1| Pyruvate formate-lyase activating enzyme [Shigella dysenteriae CDC 74-1112] gi|320182031|gb|EFW56936.1| Pyruvate formate-lyase activating enzyme [Shigella boydii ATCC 9905] gi|320184266|gb|EFW59079.1| Pyruvate formate-lyase activating enzyme [Shigella flexneri CDC 796-83] gi|320192612|gb|EFW67253.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7 str. EC1212] gi|320196604|gb|EFW71227.1| Pyruvate formate-lyase activating enzyme [Escherichia coli WV_060327] gi|320202298|gb|EFW76869.1| Pyruvate formate-lyase activating enzyme [Escherichia coli EC4100B] gi|320637770|gb|EFX07562.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O157:H7 str. G5101] gi|320653668|gb|EFX21742.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659813|gb|EFX27369.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7 str. USDA 5905] gi|320664282|gb|EFX31433.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O157:H7 str. LSU-61] gi|323157211|gb|EFZ43334.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli EPECa14] gi|323159528|gb|EFZ45508.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E128010] gi|323165367|gb|EFZ51154.1| pyruvate formate-lyase 1-activating enzyme [Shigella sonnei 53G] gi|323175475|gb|EFZ61070.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 1180] gi|323185392|gb|EFZ70756.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 1357] gi|323190722|gb|EFZ75991.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli RN587/1] gi|323379256|gb|ADX51524.1| pyruvate formate-lyase activating enzyme [Escherichia coli KO11] gi|323938008|gb|EGB34270.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E1520] gi|323942818|gb|EGB38983.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E482] gi|323947309|gb|EGB43317.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H120] gi|323953391|gb|EGB49257.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H252] gi|323958207|gb|EGB53916.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H263] gi|323962894|gb|EGB58468.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H489] gi|323967149|gb|EGB62573.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M863] gi|323973225|gb|EGB68417.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA007] gi|323976711|gb|EGB71799.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TW10509] gi|325496842|gb|EGC94701.1| pyruvate formate lyase-activating enzyme 1 [Escherichia fergusonii ECD227] gi|326338203|gb|EGD62032.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7 str. 1125] gi|326346180|gb|EGD69918.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7 str. 1044] gi|327253691|gb|EGE65320.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli STEC_7v] gi|330910682|gb|EGH39192.1| pyruvate formate-lyase activating enzyme [Escherichia coli AA86] gi|331055220|gb|EGI27229.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA206] gi|331060737|gb|EGI32701.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA143] gi|331065634|gb|EGI37527.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA271] gi|331080040|gb|EGI51219.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H299] gi|332093544|gb|EGI98602.1| pyruvate formate-lyase 1-activating enzyme [Shigella boydii 3594-74] gi|332095904|gb|EGJ00911.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae 155-74] Length = 246 Score = 41.2 bits (96), Expect = 0.096, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 72 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 108 >gi|317047551|ref|YP_004115199.1| pyruvate formate-lyase activating enzyme [Pantoea sp. At-9b] gi|316949168|gb|ADU68643.1| pyruvate formate-lyase activating enzyme [Pantoea sp. At-9b] Length = 246 Score = 41.2 bits (96), Expect = 0.097, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 54/171 (31%), Gaps = 35/171 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEDLMKDVLSYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKAGCDL 141 +GGE +LQ + +A G ++TNG ID + V+ DL Sbjct: 72 GGVTASGGEAILQAEFVRDWFRACRAEGIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDL 131 Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC 192 K Q+ V N+ DF R LQ ++ T I Y Sbjct: 132 KQINDD-----IHQILVGVSNHRTMDFAR-YLQ-------KKGTRTWIRYV 169 >gi|15920303|ref|NP_375972.1| coenzyme PQQ synthesis protein [Sulfolobus tokodaii str. 7] gi|15621085|dbj|BAB65081.1| 377aa long hypothetical coenzyme PQQ synthesis protein [Sulfolobus tokodaii str. 7] Length = 377 Score = 41.2 bits (96), Expect = 0.097, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 21/118 (17%) Query: 12 TLQGE------GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 T++GE + VF R + + + + +C C ++ Sbjct: 17 TIKGEYNPKNPSKFS---QVF-R----PVVTWNMTYKCNLKCLHC---YISASPQGDDGL 65 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 D+ +L+++ E + +++GGEPL++ D + + +KRG ++A+ TNGT+ Sbjct: 66 TKDEAINLVDQM---AEIKIPLLIMSGGEPLMRRDFFEIAKYASKRGLKLALSTNGTL 120 >gi|85716677|ref|ZP_01047646.1| Fe-S oxidoreductase [Nitrobacter sp. Nb-311A] gi|85696517|gb|EAQ34406.1| Fe-S oxidoreductase [Nitrobacter sp. Nb-311A] Length = 389 Score = 41.2 bits (96), Expect = 0.097, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C R + D EE + Sbjct: 38 CNLAC--------AGCG----KIDYPDAILNRRMTAQECWDAAEECG------APMVAIP 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ ++ +++ L R +++ TN + + +D SP + + G +E Sbjct: 80 GGEPLIHKEIGEIVRGLVARKKFVSLCTN-ALLLEKKLDLFEPSPYLFFSVHLDGLRE 136 >gi|113474120|ref|YP_720181.1| radical SAM family protein [Trichodesmium erythraeum IMS101] gi|110165168|gb|ABG49708.1| Radical SAM [Trichodesmium erythraeum IMS101] Length = 340 Score = 41.2 bits (96), Expect = 0.097, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 + GGEPLL + +++ L R + + TNG + + +D SP + Sbjct: 72 GAPVVSIPGGEPLLHPQISEIVKGLVDRKKFVYLCTNG-LLLKKNLDKFEPSPYLTFSVH 130 Query: 143 IKG 145 + G Sbjct: 131 LDG 133 >gi|332093278|gb|EGI98338.1| pyruvate formate-lyase 1-activating enzyme [Shigella boydii 5216-82] Length = 246 Score = 41.2 bits (96), Expect = 0.098, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 72 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 108 >gi|323174998|gb|EFZ60613.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli LT-68] Length = 246 Score = 41.2 bits (96), Expect = 0.098, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 72 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 108 >gi|255099315|ref|ZP_05328292.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile QCD-63q42] Length = 316 Score = 41.2 bits (96), Expect = 0.098, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 Y VD+L +I+ + +GGEPLLQ + ++ ++ A+ET+ Sbjct: 117 YTVDELVQVIKRD-SNNWRSNGGVTFSGGEPLLQHEFLHEVLLKCHEVNVHTAIETS 172 >gi|52143300|ref|YP_083529.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus E33L] gi|51976769|gb|AAU18319.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus E33L] Length = 337 Score = 41.2 bits (96), Expect = 0.098, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D F+ + D++ L G + R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPDYAFLQEEC----LLTFDEIERLARLFISMGVNKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 GEPLL+ D+P LI L K G + I + TNG Sbjct: 75 GEPLLRKDLPKLIARLAKLEGLKDIGLTTNG 105 >gi|329937240|ref|ZP_08286839.1| Transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|329303521|gb|EGG47407.1| Transcriptional regulator [Streptomyces griseoaurantiacus M045] Length = 373 Score = 41.2 bits (96), Expect = 0.099, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 14/104 (13%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 CNL DT + D+LA I E E V Sbjct: 6 QQCNLACDHCYVYELR-----DTSWRSKPRVLSEE-TADRLAVRIAEHARRHGLESVRIV 59 Query: 90 LTGGEPLL-------QVDVPLIQALNK-RGFEIAVETNGTIEPP 125 L GGEPLL + + + L +I +++NGT+ P Sbjct: 60 LHGGEPLLAGRSRMEHLLSAVTEELRGIAECDITLQSNGTLLNP 103 >gi|213619168|ref|ZP_03372994.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 151 Score = 41.2 bits (96), Expect = 0.099, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 46 FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEDLMKEVVTYRHFMNASG 90 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 91 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 127 >gi|194292465|ref|YP_002008372.1| molybdenum cofactor biosynthesis protein a [Cupriavidus taiwanensis LMG 19424] gi|193226369|emb|CAQ72318.1| MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A [Cupriavidus taiwanensis LMG 19424] Length = 358 Score = 41.2 bits (96), Expect = 0.099, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 22/97 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 D+ + +C +C D F+ T R + D+L ++ G ++ R LTG Sbjct: 36 DQCNFRCTYCMPKSRFGRDYPFL----TPAQRLSDDELLRIVRAFVGLGVEKVR---LTG 88 Query: 93 GEPLLQVDVP-LIQALNK----RGFEIAV--ETNGTI 122 GEPLL+ + L++ + G +AV TNG++ Sbjct: 89 GEPLLRKGIETLVERIAAMRTREGKPVAVAMTTNGSL 125 >gi|228945768|ref|ZP_04108115.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228813989|gb|EEM60263.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 333 Score = 41.2 bits (96), Expect = 0.099, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D F+ + D++ L G + R LTG Sbjct: 18 DRCNFRCTYCMPAEVFGPDYAFLQEEC----LLTFDEIERLARLFISMGVNKIR---LTG 70 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 GEPLL+ D+P LI L K G + I + TNG Sbjct: 71 GEPLLRKDLPKLIARLAKLEGLKDIGLTTNG 101 >gi|118477567|ref|YP_894718.1| GTP cyclohydrolase subunit MoaA [Bacillus thuringiensis str. Al Hakam] gi|225864114|ref|YP_002749492.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus 03BB102] gi|118416792|gb|ABK85211.1| GTP cyclohydrolase subunit MoaA [Bacillus thuringiensis str. Al Hakam] gi|225790320|gb|ACO30537.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus 03BB102] Length = 337 Score = 41.2 bits (96), Expect = 0.099, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D F+ + D++ L G + R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPDYAFLQEEC----LLTFDEIERLARLFISMGVNKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 GEPLL+ D+P LI L K G + I + TNG Sbjct: 75 GEPLLRKDLPKLIARLAKLEGLKDIGLTTNG 105 >gi|49481735|ref|YP_036288.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|301053674|ref|YP_003791885.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis CI] gi|49333291|gb|AAT63937.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|300375843|gb|ADK04747.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus biovar anthracis str. CI] Length = 337 Score = 41.2 bits (96), Expect = 0.099, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D F+ + D++ L G + R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPDYAFLQEEC----LLTFDEIERLARLFISMGVNKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 GEPLL+ D+P LI L K G + I + TNG Sbjct: 75 GEPLLRKDLPKLIARLAKLEGLKDIGLTTNG 105 >gi|295107081|emb|CBL04624.1| GTP cyclohydrolase subunit MoaA [Gordonibacter pamelaeae 7-10-1-b] Length = 333 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C G+Q ++ ++ ++ + + R LTGGEPL+++ Sbjct: 18 DRCNFRCIYC-MPEDGVQSLAHE--DILRIEEIEQAVRVAAGMGIRSIRLTGGEPLVRLG 74 Query: 101 -VPLIQAL-NKRGFE-IAVETNGTIEPPQGID 129 V L++A+ + G E +++ TNG + P D Sbjct: 75 VVDLVRAIAHTPGIENVSMTTNGVLLPKMADD 106 >gi|295096474|emb|CBK85564.1| glycyl-radical enzyme activating protein family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 299 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 5/71 (7%) Query: 50 CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQAL 107 C T + + G + V+++ + ++ G L+GGEP + + L +A Sbjct: 92 CPTQALTVCGEEKQ---VEEIMATVLRDKPFYDRSGGGITLSGGEPFMNPALAHALFKAS 148 Query: 108 NKRGFEIAVET 118 +++G AVET Sbjct: 149 HEQGIHTAVET 159 >gi|292669981|ref|ZP_06603407.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Selenomonas noxia ATCC 43541] gi|292648393|gb|EFF66365.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Selenomonas noxia ATCC 43541] Length = 175 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 30/105 (28%) Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLA 71 GEG R+ VF GC +C C DT Q GGR + Sbjct: 24 GEGI---RLTVF--TQGCP-----------RRCPGCHNPDT-----QPLVGGRMT--TVG 60 Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114 ++I E G L+GGEP LQ +PL +A ++RG ++ Sbjct: 61 EIIAELDANPLLTG--LTLSGGEPFLQPAALLPLARAAHERGLDV 103 >gi|292491535|ref|YP_003526974.1| molybdenum cofactor biosynthesis protein A [Nitrosococcus halophilus Nc4] gi|291580130|gb|ADE14587.1| molybdenum cofactor biosynthesis protein A [Nitrosococcus halophilus Nc4] Length = 335 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 29/145 (20%) Query: 41 DRLSAQCRFCDTDFVGIQGT----KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 DR + +C +C + + + ++++ L+ G ++ R LTGGEPL Sbjct: 20 DRCNFRCPYCMPKEIYGRKWAFLPRNELLTFEEISRLVRIFVTLGVEKVR---LTGGEPL 76 Query: 97 L-QVDVPLIQALNKRGFEIAVE--------TNGTIEPP-------QGIDWICVSPKAGCD 140 L Q L++ L ++E TNG++ G+ + VS + + Sbjct: 77 LRQDLEQLVRMLA------SIEALQDLTLTTNGSLLASRAERLKEAGLKRVTVSLDSLDE 130 Query: 141 LKIKGGQELKLVFPQVNVSPENYIG 165 ++K QV E Sbjct: 131 TTFMAMNDVKFPLAQVLEGIEAATK 155 >gi|238753495|ref|ZP_04614858.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia ruckeri ATCC 29473] gi|238708448|gb|EEQ00803.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia ruckeri ATCC 29473] Length = 215 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 54/163 (33%), Gaps = 31/163 (19%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101 +C +C DT G V++L G +GGE +LQ + Sbjct: 2 RCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFMNASGGGVTASGGEAILQAEFV 57 Query: 102 -PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155 +A +K G ++TNG + + +D DL + +++ Q Sbjct: 58 RDWFRACHKEGIHTCLDTNGFVRRYDPVIDELLD--------ETDLVMLDLKQMDDAIHQ 109 Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198 V N+ +F R+ + N I Y P W Sbjct: 110 NLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV-PGW 143 >gi|289810854|ref|ZP_06541483.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 123 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 15 FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEDLMKEVVTYRHFMNASG 59 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 60 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 96 >gi|134046071|ref|YP_001097557.1| molybdenum cofactor biosynthesis protein A [Methanococcus maripaludis C5] gi|189028687|sp|A4FYQ8|MOAA_METM5 RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|132663696|gb|ABO35342.1| GTP cyclohydrolase subunit MoaA [Methanococcus maripaludis C5] Length = 298 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 28/119 (23%) Query: 28 RFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 R S CNL +C +C G G + D++ +++ E Sbjct: 13 RLSITPKCNL-----------KCFYC--HKEGRNEEHGKLMSADEIGKIVKSSL---EFG 56 Query: 85 GRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNGTI-------EPPQGIDWICVS 134 R ++GGEPLL+ D+P +I+ + + I++ TNG + G+D + VS Sbjct: 57 VRKIKISGGEPLLRTDLPEIIENIKDEQIKDISLTTNGILLEKYAQKLKDAGLDRVNVS 115 >gi|90960988|ref|YP_534906.1| Fe-S oxidoreductase component of heme biosynthesis [Pelobacter carbinolicus DSM 2380] gi|90823171|gb|ABE01087.1| Fe-S oxidoreductase, putative component of heme biosynthesis [Pelobacter carbinolicus DSM 2380] Length = 366 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR C +D G+ G + D+ VL+ Sbjct: 23 CNLQC--------IHCR-CSSDADAPDGSFGTEEAFRLIDDI-------CTVSKPVLVLS 66 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ D+ + +G + + TNGT+ Sbjct: 67 GGEPLLRDDIFDIAAYGTDQGLRMCMATNGTL 98 >gi|319787616|ref|YP_004147091.1| molybdenum cofactor biosynthesis protein A [Pseudoxanthomonas suwonensis 11-1] gi|317466128|gb|ADV27860.1| molybdenum cofactor biosynthesis protein A [Pseudoxanthomonas suwonensis 11-1] Length = 339 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 9/86 (10%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 D + +C +C D + R + DQ+ L+ G ++ R LTGGEPLL Sbjct: 28 DACNFRCGYCMPADRVPDDHGTSAASRMSFDQIETLVRGFVQVGVRKLR---LTGGEPLL 84 Query: 98 QVDVP-LIQALNK-RGFE-IAVETNG 120 + ++P LI L + G E +A+ TNG Sbjct: 85 RRNLPELIARLARIPGIEDLALTTNG 110 >gi|298241808|ref|ZP_06965615.1| hypothetical protein Krac_10219 [Ktedonobacter racemifer DSM 44963] gi|297554862|gb|EFH88726.1| hypothetical protein Krac_10219 [Ktedonobacter racemifer DSM 44963] Length = 515 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 57/189 (30%), Gaps = 21/189 (11%) Query: 31 GCNLWSGREQDRLSAQCRF-------C--DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 GC G D C C D G ++++ +++ + Sbjct: 86 GCPYDCGLCPDHQQHACLGIIEVNSACNMDCPLCFADAGAGFNLTLEEVEGILD-HLVET 144 Query: 82 EKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNGTIEPPQGIDWICVS---PK 136 E +GGEP + + ++ A KR + + TNG +S P Sbjct: 145 EGNPEVVQFSGGEPSIHPQIIEMMWAAKKRNIRHVMLNTNGKRIADDDAFLQQLSELHPS 204 Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENYIGFDF-----ERFSLQP-MDGPFLEENTNLAIS 190 + +++ + ++ P+ D L P +D + Sbjct: 205 VYFQFDGFEAETYRIIRGEPDILPQKLRALDRLAEIGANVVLVPAIDRYVNLHEVGAIVE 264 Query: 191 YCFQNPKWR 199 + ++P R Sbjct: 265 FGMKHPAVR 273 >gi|229184372|ref|ZP_04311579.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BGSC 6E1] gi|228599168|gb|EEK56781.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BGSC 6E1] Length = 333 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D F+ + D++ L G + R LTG Sbjct: 18 DRCNFRCTYCMPAEVFGPDYAFLQEEC----LLTFDEIERLARLFISMGVNKIR---LTG 70 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 GEPLL+ D+P LI L K G + I + TNG Sbjct: 71 GEPLLRKDLPKLIARLAKLEGLKDIGLTTNG 101 >gi|95928898|ref|ZP_01311644.1| Radical SAM [Desulfuromonas acetoxidans DSM 684] gi|95135243|gb|EAT16896.1| Radical SAM [Desulfuromonas acetoxidans DSM 684] Length = 441 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 20/99 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL +C C F+ + LAD+ ++ ++ G Sbjct: 112 TQRCNL-----------RCPVC---FMAADDNQTHVETDLSLADIKKQLVKIMDQCGPQT 157 Query: 89 VL--TGGEPLLQVDVPLIQALNKR-GFEIAVE--TNGTI 122 + TGGEP ++ D+P I AL + GF A+E TNG + Sbjct: 158 SIQLTGGEPTVRKDLPDIIALCREIGFS-AIEVNTNGVV 195 >gi|220933522|ref|YP_002512421.1| GTP cyclohydrolase subunit MoaA [Thioalkalivibrio sp. HL-EbGR7] gi|219994832|gb|ACL71434.1| GTP cyclohydrolase subunit MoaA [Thioalkalivibrio sp. HL-EbGR7] Length = 327 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 16/99 (16%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEG 85 R S D+ +C +C + + + D++A ++ G + Sbjct: 15 VRLS--------VTDQCDLRCFYC-MPKGFKDFEEPEHWLSFDEIARVMGAFGQLGVQRV 65 Query: 86 RYCVLTGGEPLLQVDVP-LIQALNKR-GF-EIAVETNGT 121 R +TGGEPL++ D+P L+ L G +I++ TN T Sbjct: 66 R---ITGGEPLVRKDIPDLVSRLAALPGINDISLSTNAT 101 >gi|169832127|ref|YP_001718109.1| radical SAM domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169638971|gb|ACA60477.1| Radical SAM domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 453 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 15/108 (13%) Query: 28 RFS-----GCNLWSGREQDRLSAQC-------RFCDTD-FVGIQGTKGGRYNVDQLADLI 74 RFS GC G D C + CD + G + + + Sbjct: 76 RFSTRVERGCPHDCGLCPDHQQHTCLAIIDVTQACDLKCPACLADAGGSGFLAPEQVARL 135 Query: 75 EEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFE-IAVETNG 120 + + E +GGEP L ++ L+ +G + + TNG Sbjct: 136 LDVYRECEGNPDVLQFSGGEPTLHPELFELLALARAKGIRLVQLNTNG 183 >gi|260913766|ref|ZP_05920242.1| pyruvate formate-lyase 1-activating enzyme [Pasteurella dagmatis ATCC 43325] gi|260632305|gb|EEX50480.1| pyruvate formate-lyase 1-activating enzyme [Pasteurella dagmatis ATCC 43325] Length = 246 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G V++L + Sbjct: 21 IRFILFMQGC-----------LMRCKYCHNRDT----WDLHGGREITVEELMKEVVTYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A G ++TNG Sbjct: 66 FMNASGGGVTASGGEAVLQAEFVRDWFKACKDVGIHTCLDTNG 108 >gi|225025860|ref|ZP_03715052.1| hypothetical protein EUBHAL_00088 [Eubacterium hallii DSM 3353] gi|224956811|gb|EEG38020.1| hypothetical protein EUBHAL_00088 [Eubacterium hallii DSM 3353] Length = 307 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 4/92 (4%) Query: 33 NLWSGREQDRLS-AQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 NL + D C C D + G V++L + + + K G + Sbjct: 78 NLNVPGKIDHTKCIACGKCIDVCYHRALEMSGKWMTVEELMGELYKDRVIYRKSGGGITV 137 Query: 91 TGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 +GGE ++Q + L++A G+ A+ET G Sbjct: 138 SGGEAMVQHEFLLELLKACKSFGWTTAIETTG 169 >gi|254168706|ref|ZP_04875548.1| probable molybdenum cofactor biosynthesis protein A [Aciduliprofundum boonei T469] gi|197622332|gb|EDY34905.1| probable molybdenum cofactor biosynthesis protein A [Aciduliprofundum boonei T469] Length = 300 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 37/118 (31%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C G D++ +++ I E + R T Sbjct: 12 CNL-----------NCFYC--HREGEWHRHHSEMTPDEIERILK---IARELDIRKVKFT 55 Query: 92 GGEPLLQVDV--------PLIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134 GGEPL + D+ PL+ ++++ TNGT+ G+D + VS Sbjct: 56 GGEPLCRNDIVEIVLKSAPLMDR------DVSLTTNGTLLSKYAYELKEVGLDRVNVS 107 >gi|52220917|ref|YP_086786.1| heme d1 biosynthesis protein-like protein [Agrobacterium tumefaciens] gi|222112734|ref|YP_002559287.1| heme d1 biosynthesis protein-like protein [Agrobacterium radiobacter K84] gi|41393799|gb|AAS02147.1| heme d1 biosynthesis protein-like protein [Agrobacterium tumefaciens] gi|221728511|gb|ACM31483.1| heme d1 biosynthesis protein-like protein [Agrobacterium radiobacter K84] Length = 344 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 13/94 (13%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 C CD + T V+ ++ K +TGGEPLL I A Sbjct: 32 CVMCD----YWRLTAPNSMTVESAKAFLDLFPGDTLKSAL---ITGGEPLLNRHWREIAA 84 Query: 107 LNKRGFEIAVETNGT------IEPPQGIDWICVS 134 L G ++ TNG+ + + D + VS Sbjct: 85 LLPPGARKSICTNGSPILVKNRDIGEYFDRVTVS 118 >gi|81428584|ref|YP_395584.1| formate C-acetyltransferase activating enzyme (pyruvate formate-lyase activating enzyme) [Lactobacillus sakei subsp. sakei 23K] gi|78610226|emb|CAI55275.1| Formate C-acetyltransferase activating enzyme (Pyruvate formate-lyase activating enzyme) [Lactobacillus sakei subsp. sakei 23K] Length = 269 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 44/122 (36%), Gaps = 34/122 (27%) Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 E F ++ G G RF GC +C FC DT +G Sbjct: 33 ESFGSVDGPG---------IRFVAFLQGC-----------RMRCEFCHNPDTWNIG---- 68 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 G Y D+L KEG +GGE L+Q+D + L + +G ++T Sbjct: 69 SGEPYTADELIAKALPYKAFWGKEGG-ITCSGGESLIQIDFLIDLFKKCKAQGINTCLDT 127 Query: 119 NG 120 G Sbjct: 128 CG 129 >gi|116748310|ref|YP_844997.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116697374|gb|ABK16562.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB] Length = 331 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 19/89 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL DT +D+ ++E +T Sbjct: 38 CNLTCSGCGRIREYH----DTLH--------QEMTLDECLRSVDE------SPSPVVTIT 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETN 119 GGEPLL + L+ ++ R I TN Sbjct: 80 GGEPLLYSRIQALVDSVLARKKHIYFCTN 108 >gi|298372109|ref|ZP_06982099.1| coenzyme PQQ synthesis protein E [Bacteroidetes oral taxon 274 str. F0058] gi|298275013|gb|EFI16564.1| coenzyme PQQ synthesis protein E [Bacteroidetes oral taxon 274 str. F0058] Length = 374 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 14/90 (15%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CD G +D + D++E VLT Sbjct: 41 CNLSCLHCGSDCKKDSSVCDMPAKDFFG------ALDSITDILE-------PNNTMIVLT 87 Query: 92 GGEPLLQVDVPLI-QALNKRGFEIAVETNG 120 GGE LL+ D+ I + L RGF + TNG Sbjct: 88 GGEALLRKDIEQIGRQLYIRGFPWGIVTNG 117 >gi|305679890|ref|ZP_07402700.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Corynebacterium matruchotii ATCC 14266] gi|305660510|gb|EFM50007.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Corynebacterium matruchotii ATCC 14266] Length = 225 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 30/125 (24%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F GC L +C +C +Q G ++ + L ++ + Sbjct: 41 TIF--TQGCPL-----------RCVYC--HNPSLQAFGAGSHDFAEALALAVDRRSLIDG 85 Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNK-RGFEIAVETNGTIE---------PPQGIDWIC 132 V++GGEP + I A+++ G + + T G P DW+ Sbjct: 86 ----VVISGGEPTAVPGLADAIAAVHETAGLPVGLHTCGYSPARIGRLLERPESTPDWVG 141 Query: 133 VSPKA 137 + KA Sbjct: 142 LDIKA 146 >gi|256827640|ref|YP_003151599.1| putative Fe-S oxidoreductase [Cryptobacterium curtum DSM 15641] gi|256583783|gb|ACU94917.1| predicted Fe-S oxidoreductase [Cryptobacterium curtum DSM 15641] Length = 561 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A CR G+ G +++Q +I++ ++T Sbjct: 151 CNLSC--------AHCR-----AAAEFGSYAGELSLEQCKAVIDD---IATITNPILIIT 194 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEP ++ D+ +I +RG V TNGTI Sbjct: 195 GGEPFMRPDIWDIIDYARERGCMPVVGTNGTI 226 >gi|20094425|ref|NP_614272.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19] gi|19887509|gb|AAM02202.1| Predicted Fe-S oxidoreductase [Methanopyrus kandleri AV19] Length = 419 Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 43/165 (26%) Query: 27 CR-FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD-----QLADLIEEQWIT 80 R SGCNL C +C D I T+ + VD + D + E Sbjct: 115 VRPLSGCNLC-----------CIYCSVDEGPISRTRSRDFMVDPDYLMEWFDRVAEFKGQ 163 Query: 81 GEKEGRYCVLTG-GEPLLQVDVP-LIQALNKRGF--EIAVETNGTIEPPQ---------G 127 G + G GEP L +P ++QAL + ++++TN + + G Sbjct: 164 GLEAHLD----GQGEPTLYPFLPDVVQALKEHPHVDIVSIQTN-AVPLSEDLVDELVEAG 218 Query: 128 IDWICVS-----PKAGCDLKIKGGQE---LKLVFPQVNVSPENYI 164 ID VS PK + + + +K V + E + Sbjct: 219 IDRFNVSVNSLDPKKARAMAGRKDYDVEHVKRVVEYIAQETEADV 263 >gi|325267891|ref|ZP_08134541.1| molybdenum cofactor biosynthesis protein A [Kingella denitrificans ATCC 33394] gi|324980772|gb|EGC16434.1| molybdenum cofactor biosynthesis protein A [Kingella denitrificans ATCC 33394] Length = 324 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 63/170 (37%), Gaps = 22/170 (12%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D + +C +C + + + L ++ + + R +TGGEP L+ D Sbjct: 20 DLCNYRCNYC----LPNGYQGKAKPDELTLPEIETLAAVFAQNGTRKIRITGGEPTLRRD 75 Query: 101 VP-LIQALNKRG--FEIAVETN----GTIEP---PQGIDWICV---SPKAGCDLKIKGGQ 147 +P +I A + IA+ TN G + P G+D + V S KI G Q Sbjct: 76 LPDIIAACRAQPEIQHIALTTNAFKLGKLFPQYRAAGLDKLNVSIDSFNPETFFKITGKQ 135 Query: 148 ELKLVFPQV-NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196 E + + + N+ E + L + E AI + P Sbjct: 136 ECRHILNDLENILAEGFNNVKINTLLL----REHIAETLPDAIRFVKTRP 181 >gi|322833298|ref|YP_004213325.1| glycyl-radical enzyme activating protein family [Rahnella sp. Y9602] gi|321168499|gb|ADW74198.1| glycyl-radical enzyme activating protein family [Rahnella sp. Y9602] Length = 299 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118 G ++D L I + G L+GGEP LQ + L+Q G AVE+ Sbjct: 101 GNDADIDALMQQILRDKPFYTRTGGGVTLSGGEPFLQPQIALTLLQRCRHEGLHTAVES 159 >gi|254168775|ref|ZP_04875616.1| probable molybdenum cofactor biosynthesis protein A [Aciduliprofundum boonei T469] gi|197622212|gb|EDY34786.1| probable molybdenum cofactor biosynthesis protein A [Aciduliprofundum boonei T469] Length = 300 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 37/118 (31%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C G D++ +++ I E + R T Sbjct: 12 CNL-----------NCFYC--HREGEWHRHHSEMTPDEIERILK---IARELDIRKVKFT 55 Query: 92 GGEPLLQVDV--------PLIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134 GGEPL + D+ PL+ ++++ TNGT+ G+D + VS Sbjct: 56 GGEPLCRNDIVEIVLKSAPLMDR------DVSLTTNGTLLSKYAYELKEVGLDRVNVS 107 >gi|146283824|ref|YP_001173977.1| radical-activating enzyme [Pseudomonas stutzeri A1501] gi|145572029|gb|ABP81135.1| probable radical-activating enzyme [Pseudomonas stutzeri A1501] Length = 207 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 24/118 (20%) Query: 26 FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 FC GC +CR+C + I ++ +E++ E Sbjct: 3 FC--QGC-----------GWRCRYCHNPQL-IPACGNEEKPWSEILAFLEQRVGLLEA-- 46 Query: 86 RYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKA 137 V +GGEP LQ +P I + G+++ + + G +DW+ KA Sbjct: 47 --VVFSGGEPTLQTALPEAIAQVRALGYKVGLHSAGIKPKLFAGILPLVDWVGFDVKA 102 >gi|289674682|ref|ZP_06495572.1| radical SAM family protein [Pseudomonas syringae pv. syringae FF5] Length = 34 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 7/26 (26%), Positives = 17/26 (65%) Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQ 126 + L++ L G+E+++ET+G ++ Sbjct: 4 IALLKRLCDAGYEVSLETSGALDISA 29 >gi|229816492|ref|ZP_04446791.1| hypothetical protein COLINT_03544 [Collinsella intestinalis DSM 13280] gi|229807827|gb|EEP43630.1| hypothetical protein COLINT_03544 [Collinsella intestinalis DSM 13280] Length = 272 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 18/80 (22%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITG 81 RF GC + +C +C G G +V++L E Sbjct: 35 VRFVVFTQGCPM-----------RCAYCHNPDTWTTGEGAGTCVSVERLLGEYESNRP-- 81 Query: 82 EKEGRYCVLTGGEPLLQVDV 101 +TGGEPLLQ + Sbjct: 82 FYRTGGLTVTGGEPLLQPEF 101 >gi|206900307|ref|YP_002251638.1| antilisterial bacteriocin subtilosin biosynthesis protein AlbA, putative [Dictyoglomus thermophilum H-6-12] gi|206739410|gb|ACI18468.1| antilisterial bacteriocin subtilosin biosynthesis protein AlbA, putative [Dictyoglomus thermophilum H-6-12] Length = 464 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C C +G D+L ++E + +K R LTGGEP L + Sbjct: 131 DRCNLRCLHC----YRSSTCEGIFIEKDKLFKIVE---VLTKKGLRMVELTGGEPTLHPN 183 Query: 101 -VPLIQALNKRGFEIAVETNGT 121 + ++ L + +A+ TNGT Sbjct: 184 FIEILSYLLSKLELVAILTNGT 205 >gi|194016213|ref|ZP_03054827.1| molybdenum cofactor biosynthesis protein A [Bacillus pumilus ATCC 7061] gi|194011686|gb|EDW21254.1| molybdenum cofactor biosynthesis protein A [Bacillus pumilus ATCC 7061] Length = 305 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 17/105 (16%) Query: 90 LTGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146 +TGGEPL++ D+P LI+ L+K G E IA+ TNGT+ P K+K Sbjct: 42 ITGGEPLMRKDLPILIEKLSKIPGIEDIAMTTNGTLLPV-------------YAEKLKKA 88 Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPM-DGPFLEENTNLAIS 190 ++ +++P+ + + S+Q + DG + LAI Sbjct: 89 GLQRVTISLDSLNPDRFKQMNGRNISIQKVFDGIEAAKKAGLAIK 133 >gi|86749192|ref|YP_485688.1| radical SAM family protein [Rhodopseudomonas palustris HaA2] gi|86572220|gb|ABD06777.1| Radical SAM [Rhodopseudomonas palustris HaA2] Length = 394 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 19/98 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDT-----DF-VGIQGTKGGRYNVDQLADLIE-EQWITGEKE 84 CNL +C +C + D+ ++ GR +A+++ + + Sbjct: 16 CNL-----------KCSYCTSVADADDYGAVTSASRRGRGATIAIAEVLAMLDGFAAQVD 64 Query: 85 GRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121 L+GGE LL LI L +R + V TNGT Sbjct: 65 APLIKLSGGELFLLANAAELIAELAQRYAHVQVLTNGT 102 >gi|30262154|ref|NP_844531.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. Ames] gi|47778008|ref|YP_018776.2| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. 'Ames Ancestor'] gi|49184996|ref|YP_028248.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. Sterne] gi|167633002|ref|ZP_02391328.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0442] gi|167638349|ref|ZP_02396626.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0193] gi|170686396|ref|ZP_02877617.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0465] gi|170706016|ref|ZP_02896478.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0389] gi|177650979|ref|ZP_02933876.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0174] gi|229602502|ref|YP_002866510.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0248] gi|254684722|ref|ZP_05148582.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. CNEVA-9066] gi|254720932|ref|ZP_05182723.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A1055] gi|254737167|ref|ZP_05194871.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. Western North America USA6153] gi|254743647|ref|ZP_05201332.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. Kruger B] gi|254751482|ref|ZP_05203519.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. Vollum] gi|254758355|ref|ZP_05210382.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. Australia 94] gi|30256780|gb|AAP26017.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. Ames] gi|47551713|gb|AAT31251.2| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. 'Ames Ancestor'] gi|49178923|gb|AAT54299.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. Sterne] gi|167513650|gb|EDR89019.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0193] gi|167531814|gb|EDR94479.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0442] gi|170129018|gb|EDS97883.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0389] gi|170669472|gb|EDT20214.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0465] gi|172083440|gb|EDT68501.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0174] gi|229266910|gb|ACQ48547.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0248] Length = 337 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D F+ + D++ L G + R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPDYAFLQEEC----LLTFDEIERLARLFISMGVNKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 GEPLL+ D+P LI L K G + I + TNG Sbjct: 75 GEPLLRKDLPKLIARLAKLEGLKDIGLTTNG 105 >gi|309791205|ref|ZP_07685737.1| elongator protein 3/MiaB/NifB, putative [Oscillochloris trichoides DG6] gi|308226767|gb|EFO80463.1| elongator protein 3/MiaB/NifB, putative [Oscillochloris trichoides DG6] Length = 351 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 19/92 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C + + + LI++ G ++ + + Sbjct: 37 CNL-----------RCAMC----RHWREERPPPLPLTHWQHLIDDLAALGCRKLHF---S 78 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GGEPLL +P L+ + G + + TNGT+ Sbjct: 79 GGEPLLAPYLPDLVAQATRLGIRVTLTTNGTL 110 >gi|224826976|ref|ZP_03700074.1| Radical SAM domain protein [Lutiella nitroferrum 2002] gi|224600809|gb|EEG06994.1| Radical SAM domain protein [Lutiella nitroferrum 2002] Length = 370 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 24/116 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + G + ++L L EE +G + ++ Sbjct: 46 CNL-----------ACHDC----ISANLLNQGGIDNERLLRLAEEFAESGVRA--VVLIG 88 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI---EPPQGID---WICVSPKAGCD 140 GGEP+ L+ +L + G ++ V TNGT+ + I W+ VS AG + Sbjct: 89 GGEPMAHPKFGALVSSLYQSGIKVGVTTNGTLMHRYMDECITMTSWLRVSVDAGSE 144 >gi|293400932|ref|ZP_06645077.1| hypothetical protein gi|291305958|gb|EFE47202.1| [formate-C-acetyltransferase]-activating enzyme [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 272 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%) Query: 88 CVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119 +GGEPLLQ DV ++QAL K I VET+ Sbjct: 103 VTFSGGEPLLQADVLVGVMQALKKEQITICVETS 136 >gi|229091138|ref|ZP_04222361.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock3-42] gi|228692269|gb|EEL46005.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock3-42] Length = 333 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D F+ + D++ L G + R LTG Sbjct: 18 DRCNFRCTYCMPAEVFGPDYAFLQEEC----LLTFDEIERLARLFISMGVNKIR---LTG 70 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 GEPLL+ D+P LI L K G + I + TNG Sbjct: 71 GEPLLRKDLPKLIARLAKLEGLKDIGLTTNG 101 >gi|170754784|ref|YP_001782823.1| glycyl-radical enzyme activating family protein [Clostridium botulinum B1 str. Okra] gi|169119996|gb|ACA43832.1| glycyl-radical enzyme activating family protein [Clostridium botulinum B1 str. Okra] Length = 300 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 6/84 (7%) Query: 43 LSAQCRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 +C FC T+F + G ++ I + + E+ G +GGEP+L Sbjct: 80 DEGKCNFCGKCTNFCPNNAREYVGKDLTSQEIIKEIIKDEVFYEQSGGGVTFSGGEPMLH 139 Query: 99 VDVP--LIQALNKRGFEIAVETNG 120 D +++ RG ++T+G Sbjct: 140 ADFINGILEECKTRGIHTTIDTSG 163 >gi|154687786|ref|YP_001422947.1| molybdenum cofactor biosynthesis protein A [Bacillus amyloliquefaciens FZB42] gi|166217238|sp|A7Z9P0|MOAA_BACA2 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|154353637|gb|ABS75716.1| MoaA [Bacillus amyloliquefaciens FZB42] Length = 341 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 24/112 (21%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D F+ K + ++L L + G LTG Sbjct: 25 DRCNFRCTYCMPAELFGPDYPFLQ----KTELLSFEELERLAK--LFVGRFGVEKIRLTG 78 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPP-------QGIDWICVS 134 GEPL++ D+P LI+ L + G + IA+ TNG++ P G+ + VS Sbjct: 79 GEPLMRKDMPELIKKLARIPGLKDIAMTTNGSLLPVYAEKLKQAGLHRVTVS 130 >gi|153931596|ref|YP_001385507.1| glycyl-radical enzyme activating family protein [Clostridium botulinum A str. ATCC 19397] gi|153934810|ref|YP_001388913.1| glycyl-radical enzyme activating family protein [Clostridium botulinum A str. Hall] gi|152927640|gb|ABS33140.1| glycyl-radical enzyme activating family protein [Clostridium botulinum A str. ATCC 19397] gi|152930724|gb|ABS36223.1| glycyl-radical enzyme activating family protein [Clostridium botulinum A str. Hall] Length = 300 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 6/84 (7%) Query: 43 LSAQCRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 +C FC T+F + G ++ I + + E+ +GGEP+L Sbjct: 80 DEGKCNFCGKCTNFCPNNAREYVGKDLTPQEIIKEIIKDEVFYEQSSGGVTFSGGEPMLH 139 Query: 99 VDVP--LIQALNKRGFEIAVETNG 120 D +++ RG ++T+G Sbjct: 140 ADFINGILEECKVRGIHTTIDTSG 163 >gi|126178953|ref|YP_001046918.1| radical SAM domain-containing protein [Methanoculleus marisnigri JR1] gi|125861747|gb|ABN56936.1| Radical SAM domain protein [Methanoculleus marisnigri JR1] Length = 489 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 21/118 (17%) Query: 30 SGCN--------------LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLI 74 +GC L + +R + C FC F + DQ+ ++ Sbjct: 74 AGCPNDCGACENHRSTTLLANIDLTNRCNLNCDFC---FANARACGYVYEPTFDQIVGML 130 Query: 75 EEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNGTIEPPQGIDW 130 +GGEP ++ D+P +I+ + G ++ V TNG I Q D+ Sbjct: 131 RMLREEKPVPAPAVQFSGGEPTMRDDLPEIIRKAKELGMSQVQVATNG-IRLAQDPDY 187 >gi|212715676|ref|ZP_03323804.1| hypothetical protein BIFCAT_00576 [Bifidobacterium catenulatum DSM 16992] gi|212661043|gb|EEB21618.1| hypothetical protein BIFCAT_00576 [Bifidobacterium catenulatum DSM 16992] Length = 280 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 40/140 (28%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G + + IE Sbjct: 58 RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYYEAMVKKIERYA 100 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG------TIEPPQGI 128 + +GGE ++Q + + + G ++T+G T + I Sbjct: 101 DLFKATHGGITFSGGESMMQP--AFVSRVFHAAKEMGVHTCLDTSGFLGASYTDDMVDDI 158 Query: 129 DWICVSPKAGCDLKIKGGQE 148 D +C+ L +K G E Sbjct: 159 D-LCL-------LDVKSGDE 170 >gi|210615755|ref|ZP_03290736.1| hypothetical protein CLONEX_02954 [Clostridium nexile DSM 1787] gi|210150091|gb|EEA81100.1| hypothetical protein CLONEX_02954 [Clostridium nexile DSM 1787] Length = 294 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 21/114 (18%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFE-IAV 116 T V +L+ ++ +TGGEPLL+ +V I L K +G E + + Sbjct: 7 TWIPHSEVLTYEELLTVGKAAAALGIKHIKITGGEPLLRKNVTEFIARLKKTKGIETVTL 66 Query: 117 ETNGTIEPPQGIDWICVSPKAGCDL--------------KIKGGQELKLVFPQV 156 TNG I P I+ + KAG D K+ E+K V+ + Sbjct: 67 TTNG-ILLPNYIEQLS---KAGIDGINISLDTLEEKKFRKLTRNGEVKDVWKGI 116 >gi|167567507|ref|ZP_02360423.1| Radical SAM [Burkholderia oklahomensis EO147] gi|167574475|ref|ZP_02367349.1| Radical SAM [Burkholderia oklahomensis C6786] Length = 194 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 10/89 (11%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALN-KRGFEIAVETNGT 121 V++ I+ K ++GGEPL+Q + L+ L+ G A++T G Sbjct: 1 MTVNEAIAEIKPYIPF-LKMAGGVTVSGGEPLMQPEFVGALLSRLHDDYGLHTALDTQGY 59 Query: 122 IE------PPQGIDWICVSPKAGCDLKIK 144 + +D + + K +K + Sbjct: 60 LARNVNSSWFDAVDLVLLDIKHIDPVKYR 88 >gi|145628477|ref|ZP_01784277.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae 22.1-21] gi|144978947|gb|EDJ88633.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae 22.1-21] Length = 229 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G +V+ L + Sbjct: 21 IRFILFMQGC-----------LMRCKYCHNRDT----WDLEGGKEISVEDLMKEVVTYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A G ++TNG Sbjct: 66 FMNATGGGVTASGGEAVLQAEFVRDWFRACKAEGINTCLDTNG 108 >gi|145220160|ref|YP_001130869.1| GTP cyclohydrolase subunit MoaA [Prosthecochloris vibrioformis DSM 265] gi|145206324|gb|ABP37367.1| GTP cyclohydrolase subunit MoaA [Chlorobium phaeovibrioides DSM 265] Length = 351 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 24/113 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + + + + +L LI G + R LT Sbjct: 46 CNL-----------RCAYCMREEHESDSSGRTKMSFTELTTLISVLAEAGITKIR---LT 91 Query: 92 GGEPLLQVDVP-LIQALNKRG--FEIAVETNGTI-------EPPQGIDWICVS 134 GGEPLL+ D+ L+ +++ TNG + GID + +S Sbjct: 92 GGEPLLRGDIADLVATAKNTPGIKTVSITTNGLLLDRHLDALLSAGIDAVNMS 144 >gi|95928890|ref|ZP_01311636.1| molybdenum cofactor synthesis-like [Desulfuromonas acetoxidans DSM 684] gi|95135235|gb|EAT16888.1| molybdenum cofactor synthesis-like [Desulfuromonas acetoxidans DSM 684] Length = 326 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 6/102 (5%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +C++C ++ + L + + G ++ R +TG Sbjct: 12 NYLRLSVTDRCNLRCKYCMSEDGVAACQHNDILPYESLHLIAQAAVSMGIEKIR---VTG 68 Query: 93 GEPLLQVDV-PLIQALNKRG--FEIAVETNGTIEPPQGIDWI 131 GEPL++ + P + L+ +A+ TNG + P D Sbjct: 69 GEPLVRNGIVPFLARLSAIDGLRHLAISTNGILLPEMAQDLF 110 >gi|311745156|ref|ZP_07718941.1| molybdenum cofactor biosynthesis protein A [Algoriphagus sp. PR1] gi|311302339|gb|EAZ81895.2| molybdenum cofactor biosynthesis protein A [Algoriphagus sp. PR1] Length = 338 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 17/91 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG-RYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C++C GI T N D++ L G K+ R L Sbjct: 30 CNL-----------RCQYC-MPEEGIPLTPSKFLMNADEIESLARTFVNLGVKKIR---L 74 Query: 91 TGGEPLLQVDVPLIQA-LNKRGFEIAVETNG 120 TGGEPLL+ D I A L++ ++++ TNG Sbjct: 75 TGGEPLLRKDFEAILAKLSQFPVDLSITTNG 105 >gi|291523778|emb|CBK89365.1| pyruvate formate-lyase 1-activating enzyme [Eubacterium rectale DSM 17629] Length = 249 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 22/109 (20%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GCN+ +C++C DT + ++ Sbjct: 26 VF--LKGCNM-----------RCKYCHNPDTWAKCGENDGAKLMTPQEVLKTAMRYKAY- 71 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG---TIEPP 125 K+ ++GGE LLQ+D L + ++ ++T+G T+E P Sbjct: 72 WKQTGGITVSGGEALLQIDFVTELFKLAKEKCVNTCLDTSGNPFTVEEP 120 >gi|148508185|gb|ABQ75975.1| molybdopterin-based tungsten cofactor biosynthesis protein [uncultured haloarchaeon] Length = 572 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 58/165 (35%), Gaps = 39/165 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC F G G + + + L+ Q I R + Sbjct: 183 CNL-----------SCSFC---FASS-GPGGTHRSFETVEKLL--QTIVKSGGPRPIQFS 225 Query: 92 GGEPLLQVDVP-LIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEP ++ D+P +++ + GFE I + TNG IE + K G ++ Sbjct: 226 GGEPTVRDDLPEIVERAGQMGFEHIQINTNG-IELVE---------KKGYASRLSDAGVT 275 Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 + + E Y + G L + A+ C + Sbjct: 276 AIYLQFDGLQSETYEA----------IRGVDLADLKREAVKTCRE 310 >gi|124003343|ref|ZP_01688193.1| elongator protein 3/MiaB/NifB, putative [Microscilla marina ATCC 23134] gi|123991441|gb|EAY30872.1| elongator protein 3/MiaB/NifB, putative [Microscilla marina ATCC 23134] Length = 354 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 20/92 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C+ C +G + L LI + G + L+ Sbjct: 36 CNL-----------RCKMC-----NHWRWRGAMLDRKILKKLIPDLAKLGCQRIH---LS 76 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GGEP++ ++P ++ + K+G ++ + TN T+ Sbjct: 77 GGEPMMYPNLPQAVKWMRKQGIKVTLTTNATL 108 >gi|308071401|ref|YP_003873006.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Paenibacillus polymyxa E681] gi|305860680|gb|ADM72468.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Paenibacillus polymyxa E681] Length = 467 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 30/106 (28%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK--GGRYNVDQLADLIE-EQWITGEKEGR 86 CNL +C +C G +G G+ + ++ +GE E Sbjct: 117 QECNL-----------RCTYC----YGEEGEYNLKGKMTSEIAKSAVDFLIQQSGETEQL 161 Query: 87 YCVLTGGEPLLQVDVPLIQ----------ALNKRGFEIAVETNGTI 122 GGEPLL + PLIQ ++K+ F ++ TNGT+ Sbjct: 162 NITFFGGEPLL--NFPLIQETVQYVHEQSEIHKKKFSFSITTNGTL 205 >gi|206890819|ref|YP_002248648.1| radical SAM domain protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742757|gb|ACI21814.1| radical SAM domain protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 352 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 16/92 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR + V + D+ VLT Sbjct: 16 CNLRC--------IHCRSSSEEIVKEHPDPSKEECFRTIDDIT-------SYAKPVLVLT 60 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GGEPLL+ D + N +G + + TNGT+ Sbjct: 61 GGEPLLREDFFEIAAYANSKGLRVCLATNGTL 92 >gi|158321418|ref|YP_001513925.1| glycyl-radical activating family protein [Alkaliphilus oremlandii OhILAs] gi|158141617|gb|ABW19929.1| glycyl-radical enzyme activating protein family [Alkaliphilus oremlandii OhILAs] Length = 316 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG 120 V +L ++IEE E G L+GGE +Q + L+ G A+ET G Sbjct: 118 TVSELLEIIEEDTAFYEMSGGGVTLSGGEVTMQPEFATNLLMTCKNEGINTAIETCG 174 >gi|291561188|emb|CBL39987.1| Pyruvate-formate lyase-activating enzyme [butyrate-producing bacterium SS3/4] Length = 291 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 21/115 (18%) Query: 24 AVFCRFSGCNL---WSGREQDRLSAQCRFCDTDF---VGIQGTKGGRYNVDQLADLIEEQ 77 VF GC++ W ++ L + R+ D V +GT G Y+ D+L + + Sbjct: 26 TVF--LKGCSIHCPWCSNPENLLHREQRYVKMDHNGKVEEEGTYGKWYSPDELYSEVIKD 83 Query: 78 WITGEKEGRY-----------CVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETN 119 +GGE +LQ P++Q LN VET+ Sbjct: 84 KSFYGYCNANSATYLDSLPGGVTFSGGECMLQMKELDPMLQRLNDEQIHTIVETS 138 >gi|326201862|ref|ZP_08191732.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] gi|325987657|gb|EGD48483.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] Length = 346 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 8/82 (9%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QV 99 R + +C +C+ + + + L +LIE G TGGEP + Q Sbjct: 14 SRCNFRCVYCNPEGLWEDKEN---VSFKDLVELIEASRCNGITRIH---WTGGEPTIRQD 67 Query: 100 DVPLIQALNKRGFEIA-VETNG 120 L++A + G + TNG Sbjct: 68 LPELMKAAKEIGITQQIITTNG 89 >gi|118581741|ref|YP_902991.1| radical SAM domain-containing protein [Pelobacter propionicus DSM 2379] gi|118504451|gb|ABL00934.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379] Length = 423 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 12/92 (13%) Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF 112 F+ K + VD L +E+ + + ++ GGEP L D+ +I L K Sbjct: 186 FIPEGKCKLRHFPVDDLVSTVEKILQSVDVVNELSIV-GGEPFLHPDLADIIHKLQKHNK 244 Query: 113 --EIAVETNGTIEPPQGID--------WICVS 134 + + TNGT+ P Q + ++ VS Sbjct: 245 VRRVEIATNGTVCPKQEVVKVLKGEKLYVTVS 276 >gi|327480682|gb|AEA83992.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas stutzeri DSM 4166] Length = 381 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 8/98 (8%) Query: 27 CRF--SGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 R SG +W E + QC FC ++ + + D+ D++ + G Sbjct: 8 LRLDGSGNPVWLLLELTYQCPLQCVFC-SNPRNFADYRREELSTDEWIDVMAQARAMGAV 66 Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 + +GGEP L+ D+ L+ ++ G+ + T+G Sbjct: 67 Q---IGFSGGEPTLRKDLETLVAEADRMGYYTNLITSG 101 >gi|307822380|ref|ZP_07652612.1| hopanoid biosynthesis associated radical SAM protein HpnH [Methylobacter tundripaludum SV96] gi|307736946|gb|EFO07791.1| hopanoid biosynthesis associated radical SAM protein HpnH [Methylobacter tundripaludum SV96] Length = 369 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 22/119 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R + ++ ++E + + Sbjct: 38 CNL-----------ACAGCGKIDYS--DDILDKRLSFEECMQAVDE------CDAPMVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ ++P +++ + R + + TN + + ID SP + + G QE Sbjct: 79 PGGEPLIHKEMPQIVEGIIARKKFVYLCTN-ALLLKKRIDDYKPSPYLTFSIHLDGMQE 136 >gi|306795092|ref|ZP_07433394.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis SUMu005] gi|308336638|gb|EFP25489.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis SUMu005] Length = 344 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 25/105 (23%) Query: 32 CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 CNL +CR+C + ++ + + +VD+++ +++ G + R Sbjct: 56 CNL-----------RCRYCMPEAEYAWL--PRADLLSVDEISLIVDAFIAVGVDKIR--- 99 Query: 90 LTGGEPLLQVDVPLIQALNKR------GFE-IAVETNGTIEPPQG 127 LTGGEPL++ D+ I + G + +A+ TNG + Q Sbjct: 100 LTGGEPLIRSDLAAIIEVISAKVGDGSGLQDLAITTNGVLLADQA 144 >gi|289576050|ref|ZP_06456277.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis K85] gi|289540481|gb|EFD45059.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis K85] Length = 395 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 25/105 (23%) Query: 32 CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 CNL +CR+C + ++ + + +VD+++ +++ G + R Sbjct: 73 CNL-----------RCRYCMPEAEYAWL--PRADLLSVDEISLIVDAFIAVGVDKIR--- 116 Query: 90 LTGGEPLLQVDVPLIQALNKR------GFE-IAVETNGTIEPPQG 127 LTGGEPL++ D+ I + G + +A+ TNG + Q Sbjct: 117 LTGGEPLIRSDLAAIIEVISAKVGDGSGLQDLAITTNGVLLADQA 161 >gi|260206683|ref|ZP_05774174.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis K85] Length = 378 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 25/105 (23%) Query: 32 CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 CNL +CR+C + ++ + + +VD+++ +++ G + R Sbjct: 56 CNL-----------RCRYCMPEAEYAWL--PRADLLSVDEISLIVDAFIAVGVDKIR--- 99 Query: 90 LTGGEPLLQVDVPLIQALNKR------GFE-IAVETNGTIEPPQG 127 LTGGEPL++ D+ I + G + +A+ TNG + Q Sbjct: 100 LTGGEPLIRSDLAAIIEVISAKVGDGSGLQDLAITTNGVLLADQA 144 >gi|322419871|ref|YP_004199094.1| glycyl-radical enzyme activating protein family [Geobacter sp. M18] gi|320126258|gb|ADW13818.1| glycyl-radical enzyme activating protein family [Geobacter sp. M18] Length = 294 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119 G +VD+L ++ + + E G +GGEPL Q L+ G AV+T Sbjct: 93 GQETSVDELLQIVLKDRMFFEDSGGGVTFSGGEPLSQPAFLKELLNGCRAHGIHTAVDTA 152 Query: 120 GTIEPPQGID 129 P +D Sbjct: 153 ALCPPETLLD 162 >gi|215447633|ref|ZP_03434385.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis T85] gi|294993731|ref|ZP_06799422.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis 210] gi|323718197|gb|EGB27379.1| molybdenum cofactor biosynthesis protein A 3 [Mycobacterium tuberculosis CDC1551A] Length = 370 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 25/105 (23%) Query: 32 CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 CNL +CR+C + ++ + + +VD+++ +++ G + R Sbjct: 48 CNL-----------RCRYCMPEAEYAWL--PRADLLSVDEISLIVDAFIAVGVDKIR--- 91 Query: 90 LTGGEPLLQVDVPLIQALNKR------GFE-IAVETNGTIEPPQG 127 LTGGEPL++ D+ I + G + +A+ TNG + Q Sbjct: 92 LTGGEPLIRSDLAAIIEVISAKVGDGSGLQDLAITTNGVLLADQA 136 >gi|188535004|ref|YP_001908801.1| pyrroloquinoline quinone biosynthesis protein PqqE [Erwinia tasmaniensis Et1/99] gi|226704990|sp|B2VL10|PQQE_ERWT9 RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|188030046|emb|CAO97932.1| Coenzyme PQQ synthesis protein E (Pyrroloquinoline quinone biosynthesis protein E) [Erwinia tasmaniensis Et1/99] Length = 382 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF + + Q ++ ++ G + Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFAQQEKE----LSTAQWIEVFKQARAMGAVQ---IG 63 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL++ D+P LI++ + GF + T+G Sbjct: 64 FSGGEPLVRKDLPELIRSARELGFYTNLITSG 95 >gi|154150386|ref|YP_001404004.1| radical SAM domain-containing protein [Candidatus Methanoregula boonei 6A8] gi|153998938|gb|ABS55361.1| Radical SAM domain protein [Methanoregula boonei 6A8] Length = 487 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 6/90 (6%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 L + +R + C FC F + + D++ +++ +G Sbjct: 92 LANIDLTNRCNLDCDFC---FANARACGFVYEPSFDEIVGMMQVLRSEKPVPAPAVQFSG 148 Query: 93 GEPLLQVDV-PLIQALNKRGF-EIAVETNG 120 GEP ++ D+ +++ + GF ++ + TNG Sbjct: 149 GEPTMRDDLVEIVKKAKELGFPQVQIATNG 178 >gi|308374842|ref|ZP_07437591.2| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis SUMu006] gi|308378273|ref|ZP_07482086.2| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis SUMu009] gi|308340502|gb|EFP29353.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis SUMu006] gi|308353061|gb|EFP41912.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis SUMu009] Length = 334 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 25/105 (23%) Query: 32 CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 CNL +CR+C + ++ + + +VD+++ +++ G + R Sbjct: 12 CNL-----------RCRYCMPEAEYAWL--PRADLLSVDEISLIVDAFIAVGVDKIR--- 55 Query: 90 LTGGEPLLQVDVPLIQALNKR------GFE-IAVETNGTIEPPQG 127 LTGGEPL++ D+ I + G + +A+ TNG + Q Sbjct: 56 LTGGEPLIRSDLAAIIEVISAKVGDGSGLQDLAITTNGVLLADQA 100 >gi|15842918|ref|NP_337955.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis CDC1551] gi|254233936|ref|ZP_04927261.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis C] gi|308372502|ref|ZP_07428891.2| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis SUMu004] gi|13883252|gb|AAK47769.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis CDC1551] gi|124599465|gb|EAY58569.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis C] gi|308333180|gb|EFP22031.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis SUMu004] Length = 395 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 25/105 (23%) Query: 32 CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 CNL +CR+C + ++ + + +VD+++ +++ G + R Sbjct: 73 CNL-----------RCRYCMPEAEYAWL--PRADLLSVDEISLIVDAFIAVGVDKIR--- 116 Query: 90 LTGGEPLLQVDVPLIQALNKR------GFE-IAVETNGTIEPPQG 127 LTGGEPL++ D+ I + G + +A+ TNG + Q Sbjct: 117 LTGGEPLIRSDLAAIIEVISAKVGDGSGLQDLAITTNGVLLADQA 161 >gi|31794507|ref|NP_857000.1| molybdenum cofactor biosynthesis protein A [Mycobacterium bovis AF2122/97] gi|121639250|ref|YP_979474.1| putative molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991747|ref|YP_002646436.1| putative molybdenum cofactor biosynthesis protein A [Mycobacterium bovis BCG str. Tokyo 172] gi|308370225|ref|ZP_07420716.2| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis SUMu002] gi|308376074|ref|ZP_07445991.2| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis SUMu007] gi|31620103|emb|CAD95457.1| PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A MOAA1 [Mycobacterium bovis AF2122/97] gi|121494898|emb|CAL73381.1| Probable molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774862|dbj|BAH27668.1| putative molybdenum cofactor biosynthesis protein A [Mycobacterium bovis BCG str. Tokyo 172] gi|308325127|gb|EFP13978.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis SUMu002] gi|308344434|gb|EFP33285.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis SUMu007] Length = 354 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 25/105 (23%) Query: 32 CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 CNL +CR+C + ++ + + +VD+++ +++ G + R Sbjct: 32 CNL-----------RCRYCMPEAEYAWL--PRADLLSVDEISLIVDAFIAVGVDKIR--- 75 Query: 90 LTGGEPLLQVDVPLIQALNKR------GFE-IAVETNGTIEPPQG 127 LTGGEPL++ D+ I + G + +A+ TNG + Q Sbjct: 76 LTGGEPLIRSDLAAIIEVISAKVGDGSGLQDLAITTNGVLLADQA 120 >gi|215405341|ref|ZP_03417522.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis 02_1987] gi|215432291|ref|ZP_03430210.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis EAS054] gi|254365947|ref|ZP_04981992.1| hypothetical protein TBHG_03262 [Mycobacterium tuberculosis str. Haarlem] gi|289747146|ref|ZP_06506524.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis 02_1987] gi|289755450|ref|ZP_06514828.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis EAS054] gi|289759472|ref|ZP_06518850.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis T85] gi|306786201|ref|ZP_07424523.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis SUMu003] gi|306805136|ref|ZP_07441804.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis SUMu008] gi|50402224|sp|P62588|MOAA3_MYCBO RecName: Full=Molybdenum cofactor biosynthesis protein A 3 gi|50402225|sp|P62589|MOAA3_MYCTU RecName: Full=Molybdenum cofactor biosynthesis protein A 3 gi|2909380|emb|CAA76291.1| moaA [Mycobacterium tuberculosis] gi|134151460|gb|EBA43505.1| hypothetical protein TBHG_03262 [Mycobacterium tuberculosis str. Haarlem] gi|289687674|gb|EFD55162.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis 02_1987] gi|289696037|gb|EFD63466.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis EAS054] gi|289715036|gb|EFD79048.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis T85] gi|308329349|gb|EFP18200.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis SUMu003] gi|308348438|gb|EFP37289.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis SUMu008] gi|326902445|gb|EGE49378.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis W-148] Length = 378 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 25/105 (23%) Query: 32 CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 CNL +CR+C + ++ + + +VD+++ +++ G + R Sbjct: 56 CNL-----------RCRYCMPEAEYAWL--PRADLLSVDEISLIVDAFIAVGVDKIR--- 99 Query: 90 LTGGEPLLQVDVPLIQALNKR------GFE-IAVETNGTIEPPQG 127 LTGGEPL++ D+ I + G + +A+ TNG + Q Sbjct: 100 LTGGEPLIRSDLAAIIEVISAKVGDGSGLQDLAITTNGVLLADQA 144 >gi|282900472|ref|ZP_06308421.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Cylindrospermopsis raciborskii CS-505] gi|281194665|gb|EFA69613.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Cylindrospermopsis raciborskii CS-505] Length = 210 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 30/96 (31%), Gaps = 20/96 (20%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 GR AV GC C C Q + + DL E+ Sbjct: 37 GRRAV-VWMQGCP-----------RHCSSC----FNPQSWSFEVNKLVAIDDLAEDILRN 80 Query: 81 GEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEI 114 E G +GGEP LQ L + L RG + Sbjct: 81 SENTG--VTFSGGEPFLQAKSLAILARKLKARGLNV 114 >gi|288936373|ref|YP_003440432.1| glycyl-radical enzyme activating protein family [Klebsiella variicola At-22] gi|290510571|ref|ZP_06549941.1| pyruvate formate lyase activating enzyme [Klebsiella sp. 1_1_55] gi|288891082|gb|ADC59400.1| glycyl-radical enzyme activating protein family [Klebsiella variicola At-22] gi|289777287|gb|EFD85285.1| pyruvate formate lyase activating enzyme [Klebsiella sp. 1_1_55] Length = 299 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G NV+ + + ++ G L+GGEP + + L +A ++ G AVET Sbjct: 101 GEEKNVEAIMATVLRDKPFYDRSGGGITLSGGEPFMNPTLAQALFEASHQAGIHTAVET 159 >gi|326204014|ref|ZP_08193875.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] gi|325985781|gb|EGD46616.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] Length = 454 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105 C +C + + + + + +I+E ++ G + +LTGGEPLL+ D+ +I Sbjct: 138 CPYCYAKAKQKETVEENSMDTEIVMRIIQEAFMLGIEG---ILLTGGEPLLRPDIYKIID 194 Query: 106 ALNKRGFEIAV 116 + I+V Sbjct: 195 --CAASYHISV 203 >gi|302875317|ref|YP_003843950.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|307688170|ref|ZP_07630616.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|302578174|gb|ADL52186.1| Radical SAM domain protein [Clostridium cellulovorans 743B] Length = 293 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C FC T K + + +++E + + Sbjct: 15 CNL-----------ACDFCPKTKR------KAQLMDYESFCKILDEIRPYTDYIYLHVK- 56 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPL ++ + ++GF + + TNGT+ Sbjct: 57 --GEPLSHPELERFLDVSYEKGFMVNITTNGTL 87 >gi|206580344|ref|YP_002239527.1| glycyl-radical enzyme activating protein family [Klebsiella pneumoniae 342] gi|206569402|gb|ACI11178.1| glycyl-radical enzyme activating protein family [Klebsiella pneumoniae 342] Length = 299 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G NV+ + + ++ G L+GGEP + + L +A ++ G AVET Sbjct: 101 GEEKNVEAIMATVLRDKPFYDRSGGGITLSGGEPFMNPTLAQALFEASHQAGIHTAVET 159 >gi|171056939|ref|YP_001789288.1| pyrroloquinoline quinone biosynthesis protein PqqE [Leptothrix cholodnii SP-6] gi|170774384|gb|ACB32523.1| coenzyme PQQ biosynthesis protein E [Leptothrix cholodnii SP-6] Length = 386 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 5/90 (5%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R C FC + + G+ AD + C + Sbjct: 17 PLWLLAEVTYRCPLHCVFC---YNPLDFAAQGKAQELPTADWLRVLREARALGAVQCGFS 73 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 GGEPL + D+ +I ++ GF + T+G Sbjct: 74 GGEPLERDDLEEMIAEAHRLGFYTNLLTSG 103 >gi|123441843|ref|YP_001005826.1| pyruvate formate lyase-activating enzyme 1 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088804|emb|CAL11610.1| pyruvate formate-lyase 1 activating enzyme [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 215 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 31/163 (19%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101 +C +C DT G V++L G +GGE +LQ + Sbjct: 2 RCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFMNASGGGVTASGGEAILQAEFV 57 Query: 102 -PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155 +A ++ G ++TNG + + +D DL + +++ Q Sbjct: 58 RDWFRACHEEGIHTCLDTNGFVRRYDPVIDELLD--------ATDLVMLDLKQMDDSVHQ 109 Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198 V N+ +F R+ + N I Y P W Sbjct: 110 NLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV-PGW 143 >gi|313900896|ref|ZP_07834386.1| glycyl-radical enzyme activating protein family protein [Clostridium sp. HGF2] gi|312954316|gb|EFR35994.1| glycyl-radical enzyme activating protein family protein [Clostridium sp. HGF2] Length = 298 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTIE 123 + D++ + E+ L+GGE L Q L+ L + G +AVET G I+ Sbjct: 107 DADEVVATCLQDRDFYEESQGGVTLSGGEALAQPSFAKALVLRLKQEGIHVAVETTGYIQ 166 Query: 124 P 124 P Sbjct: 167 P 167 >gi|222055532|ref|YP_002537894.1| glycyl-radical enzyme activating protein family [Geobacter sp. FRC-32] gi|221564821|gb|ACM20793.1| glycyl-radical enzyme activating protein family [Geobacter sp. FRC-32] Length = 349 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 9/77 (11%) Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--P 102 + CRF G + T G +++ + + I G ++GGEPL+ Sbjct: 96 SACRF------GARETVGKPLDMNAIVEEAVSDRIFYNNSGGGVTISGGEPLMYPAFTRE 149 Query: 103 LIQALN-KRGFEIAVET 118 L + L + +AVET Sbjct: 150 LTRILKVREDVHVAVET 166 >gi|15921671|ref|NP_377340.1| molybdenum cofactor biosynthesis protein A [Sulfolobus tokodaii str. 7] gi|24212000|sp|Q971H1|MOAA_SULTO RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|15622458|dbj|BAB66449.1| 313aa long hypothetical molybdenum cofactor biosynthesis protein A [Sulfolobus tokodaii str. 7] Length = 313 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 20/158 (12%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQ 105 C FC + + + ++++ L+ + I E R LTGGEP L + + +I+ Sbjct: 24 CFFC---HMEGEDNSQSLLSPEEIS-LVAKVGI--EYGIRSVKLTGGEPTLRRDLLQIIR 77 Query: 106 ALNKRGF-EIAVETNG----TIEPPQ---GIDWICVS----PKAGCDLKIKGGQELKLVF 153 L G E+++ TNG T+ G+D + VS K I G L V Sbjct: 78 ELKDVGIKEVSMTTNGVLLSTLAWKLKEVGLDRVNVSLHSLDKQLFKE-ITGVDALDKVI 136 Query: 154 PQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191 + + + + F L + L+ N AI Sbjct: 137 EGIKEAIKAGLRPLKLNFVLTKKNISQLDNIINFAIET 174 >gi|148262587|ref|YP_001229293.1| radical SAM domain-containing protein [Geobacter uraniireducens Rf4] gi|146396087|gb|ABQ24720.1| Radical SAM domain protein [Geobacter uraniireducens Rf4] Length = 367 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 6/90 (6%) Query: 34 LWSGREQDRLSAQCRFCDTDF--VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L + R + C CD + ++ + +I E G T Sbjct: 47 LGTLMVTYRCNFHCAMCDMPLQASAQARSGMTEFDTARFLGIINEFAELGVPG---IGFT 103 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 GGEPLL+ D+ L+ + G + TNG Sbjct: 104 GGEPLLRDDIFDLLTETRRLGMIAHLNTNG 133 >gi|148254416|ref|YP_001239001.1| hypothetical protein BBta_2971 [Bradyrhizobium sp. BTAi1] gi|146406589|gb|ABQ35095.1| hypothetical protein BBta_2971 [Bradyrhizobium sp. BTAi1] Length = 382 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C R + D +E + Sbjct: 38 CNLAC--------AGCG----KIDYPDAILNRRMTAQECWDAADECG------APMVAIP 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ ++ +++ L R +++ TN + + +D SP + + G +E Sbjct: 80 GGEPLIHKEIGEIVRGLVARKKFVSLCTN-ALLLEKKLDLFEPSPYLFFSVHLDGLRE 136 >gi|302538640|ref|ZP_07290982.1| predicted protein [Streptomyces sp. C] gi|302447535|gb|EFL19351.1| predicted protein [Streptomyces sp. C] Length = 317 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 19/94 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC G+ VD + I G LT Sbjct: 51 CNL-----------SCTFC----HNEGAPTSGKLTVDTASAAIAAATRAGFTR---VQLT 92 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124 GGEPLL+ D+P ++A + ++ V TNGT P Sbjct: 93 GGEPLLRPDIPDFVRAAREHVDDVGVTTNGTFLP 126 >gi|322419474|ref|YP_004198697.1| molybdenum cofactor biosynthesis protein A [Geobacter sp. M18] gi|320125861|gb|ADW13421.1| molybdenum cofactor biosynthesis protein A [Geobacter sp. M18] Length = 326 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 70/177 (39%), Gaps = 19/177 (10%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +C +C + + + + ++L + E G ++ R +TG Sbjct: 12 NYLRLSVTDRCNLRCSYCMPEDGVEKLSHCEMLSYEELLRISAEAVAAGIEKIR---ITG 68 Query: 93 GEPLLQVD-VPLIQALN-KRGF-EIAVETNGTI--EPPQGIDWICV--------SPKAGC 139 GEPL++ + + L G E+ + TNG + E QG+ V S K Sbjct: 69 GEPLVRKGILDFLSRLAVLPGLKELVLTTNGLLLKEMAQGLKDAGVQRLNISLDSLKPET 128 Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196 KI G +L+ V + +GF + ++ M G +E + + + P Sbjct: 129 FAKITRGGDLQRVLD--GIDEAERVGFPPHKINVVVMRGVNDDEMLDF-VELTLKRP 182 >gi|254173013|ref|ZP_04879687.1| radical SAM domain protein [Thermococcus sp. AM4] gi|214033169|gb|EEB73997.1| radical SAM domain protein [Thermococcus sp. AM4] Length = 590 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 18/105 (17%) Query: 32 CNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77 C L G +R + C +C F +G ++Q+ ++ Sbjct: 124 CPLDCGLCPRHRSHTSLLNIVLTNRCNLSCWYC--FFYAKEGQPIYEPTLEQIRMMLRNA 181 Query: 78 WITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120 TGGEP L+ D+ +I+ + G+ I + T+G Sbjct: 182 KKEYPIGANAVQFTGGEPTLRDDLIEIIKIAKEEGYDHIQLNTDG 226 >gi|118580355|ref|YP_901605.1| radical SAM domain-containing protein [Pelobacter propionicus DSM 2379] gi|118503065|gb|ABK99547.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379] Length = 727 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 38/122 (31%), Gaps = 32/122 (26%) Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGT 60 GEG GC G + R + +C FC F Sbjct: 69 GEGR------------GCPFDCGICSEHRQQSCTVLIEVTGRCNLRCPFC---FADSGDD 113 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVET 118 G + LA ++GGEP ++ D+P +I GF I + T Sbjct: 114 SGPDPSPADLAWRFLNALR-KSGPHNIVQISGGEPTVRDDLPEIISLGRTIGFPFIQLNT 172 Query: 119 NG 120 NG Sbjct: 173 NG 174 >gi|330833997|ref|YP_004408725.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4] gi|329566136|gb|AEB94241.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4] Length = 316 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 50/151 (33%), Gaps = 22/151 (14%) Query: 47 CRFCDT--DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102 C +C + G L D + E + +TGG+PLL +D V Sbjct: 17 CYYCPVSENRFGKDNFYANELKTSDLQDFVYESYRMNALGAG---ITGGDPLLHLDRVVE 73 Query: 103 LIQALNKR---GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL--VFPQVN 157 LI+ L + + + T G + +L G E++ V PQ Sbjct: 74 LIKLLKAEFGTSYHVHLYTTGRYATRDAL----------SELLSVGLDEIRFHPVKPQYL 123 Query: 158 VSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 + E +G E P E+ T L Sbjct: 124 SAVEKALGLGMEVGLEIPAIPGEEEKITKLI 154 >gi|328676842|gb|AEB27712.1| Radical SAM domain heme biosynthesis protein [Francisella cf. novicida Fx1] Length = 361 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 16/92 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R S+ C + ++ ++ +I+ VL+ Sbjct: 16 CNLKCV--HCRSSSDC----------EVLGHPDFSTEEGFRIIDSIVAFA---NPVLVLS 60 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ D+ L + +G +A+ TNG++ Sbjct: 61 GGEPLLRADIFELAEYGANKGLRMALATNGSL 92 >gi|297569660|ref|YP_003691004.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296925575|gb|ADH86385.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 346 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 18/94 (19%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 +GCNL CR C ++ G + +L +E + Sbjct: 27 LTGCNL-----------SCRHC---YINPDQHGRGPVSRHELMQWLE--LFATPNQESNL 70 Query: 89 VLTGGEPLLQVDVPL-IQALNKRGFE-IAVETNG 120 + GGEP L D+ ++ + G+ I ++TNG Sbjct: 71 IFLGGEPTLHPDLVSGVRRARELGYRGITIDTNG 104 >gi|225389655|ref|ZP_03759379.1| hypothetical protein CLOSTASPAR_03403 [Clostridium asparagiforme DSM 15981] gi|225044290|gb|EEG54536.1| hypothetical protein CLOSTASPAR_03403 [Clostridium asparagiforme DSM 15981] Length = 335 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 10/93 (10%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK-EGRYCVLTGGEPLLQV 99 DR + +CR+C G + + I + R+ +TGGEPL++ Sbjct: 18 DRCNLRCRYC-----MPDGVEWLPMEDILSYEEIGRVCRAAARLGIRHLKITGGEPLVRK 72 Query: 100 DVP-LIQALNK-RGFE-IAVETNGTIEPPQGID 129 P LI +L G E + + TNG I Q +D Sbjct: 73 GCPELIGSLKNIPGIEAVTITTNG-ILLEQHLD 104 >gi|189460140|ref|ZP_03008925.1| hypothetical protein BACCOP_00776 [Bacteroides coprocola DSM 17136] gi|189433130|gb|EDV02115.1| hypothetical protein BACCOP_00776 [Bacteroides coprocola DSM 17136] Length = 462 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 10/106 (9%) Query: 46 QCRFCDTDFVGIQGTKGGRYN---VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 +C +C + G VD+ +E+ + + L GGEPLL+ + Sbjct: 119 RCPYCFEERKKKDGKLKIAMTKEMVDKAYQAMEKIEPQQQLHCKDIALYGGEPLLKENRD 178 Query: 103 LIQAL----NKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144 +++ + ++G++ TNG + +D +SP+ L+I Sbjct: 179 IVEYIVRKGCEKGYKFHALTNG-YDLDAFVDL--LSPELIYKLQIT 221 >gi|332162215|ref|YP_004298792.1| pyruvate formate lyase-activating enzyme 1 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666445|gb|ADZ43089.1| pyruvate formate lyase-activating enzyme 1 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 215 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 31/163 (19%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101 +C +C DT G V++L G +GGE +LQ + Sbjct: 2 RCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFMNASGGGVTASGGEAILQAEFV 57 Query: 102 -PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155 +A ++ G ++TNG + + +D DL + +++ Q Sbjct: 58 RDWFRACHEEGIHTCLDTNGFVRRYDPVIDELLD--------ATDLVMLDLKQMDDSVHQ 109 Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198 V N+ +F R+ + N I Y P W Sbjct: 110 NLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV-PGW 143 >gi|228474586|ref|ZP_04059317.1| molybdenum cofactor biosynthesis protein A [Staphylococcus hominis SK119] gi|228271249|gb|EEK12617.1| molybdenum cofactor biosynthesis protein A [Staphylococcus hominis SK119] Length = 340 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D DFV + D++ + + G K+ R +TGG Sbjct: 22 DRCNFRCDYCMPKEIFGD-DFVFLPKE--ELLTFDEITTIAKVYAELGVKKLR---ITGG 75 Query: 94 EPLLQVDV-PLIQALNK-RGFE-IAVETNG 120 EPLL+ D+ LI+ LN+ G E I + TNG Sbjct: 76 EPLLRRDLYKLIEKLNRIEGIEDIGMTTNG 105 >gi|146339638|ref|YP_001204686.1| hypothetical protein BRADO2631 [Bradyrhizobium sp. ORS278] gi|146192444|emb|CAL76449.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278] Length = 382 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C R + + D +E + Sbjct: 38 CNLAC--------AGCG----KIDYPDAILNRRMSAQECWDAADECG------APMVAIP 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ ++ +++ L R +++ TN + + +D SP + + G +E Sbjct: 80 GGEPLIHKEIGEIVRGLVARKKFVSLCTN-ALLLEKKLDLFEPSPYLFFSVHLDGLRE 136 >gi|323484393|ref|ZP_08089760.1| molybdenum cofactor biosynthesis protein A [Clostridium symbiosum WAL-14163] gi|323402387|gb|EGA94718.1| molybdenum cofactor biosynthesis protein A [Clostridium symbiosum WAL-14163] Length = 324 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 23/125 (18%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR + C +C ++ F+ + +++ E I G R+ +TGGEPLL Sbjct: 20 DRCNLNCAYCRPENSPFLSRKA----LLTSEEILAFCREAAILG---IRHIKITGGEPLL 72 Query: 98 QVD-VPLIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS---PKAGCDLKIK 144 + D +++ L K G E + + TNG + GID I +S P C + Sbjct: 73 RTDCCSIVEKLKKTSGIETVTLTTNGLLLREHLGRLKEAGIDGINISMDTPDRACYAALT 132 Query: 145 GGQEL 149 G L Sbjct: 133 GSDRL 137 >gi|312876158|ref|ZP_07736146.1| Radical SAM domain protein [Caldicellulosiruptor lactoaceticus 6A] gi|311797144|gb|EFR13485.1| Radical SAM domain protein [Caldicellulosiruptor lactoaceticus 6A] Length = 355 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-P 102 + +C + D F I+ + G D+ ++++E G +TGGEPLL+ D+ Sbjct: 30 TRKCTW-DCRFCYIEKHEEGELKTDEYFNILDELSSMGTF---VVTITGGEPLLRNDIFD 85 Query: 103 LIQALNKRGFEIAVETNG 120 + K+G + + TNG Sbjct: 86 IANYARKKGMGLILYTNG 103 >gi|312622812|ref|YP_004024425.1| Radical SAM domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] gi|312203279|gb|ADQ46606.1| Radical SAM domain protein [Caldicellulosiruptor kronotskyensis 2002] Length = 355 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-P 102 + +C + D F I+ + G D+ ++++E G +TGGEPLL+ D+ Sbjct: 30 TRKCTW-DCRFCYIEKHEEGELKTDEYFNILDELSSMGTF---VVTITGGEPLLRNDIFD 85 Query: 103 LIQALNKRGFEIAVETNG 120 + K+G + + TNG Sbjct: 86 IANYARKKGMGLILYTNG 103 >gi|303234148|ref|ZP_07320794.1| radical SAM domain protein [Finegoldia magna BVS033A4] gi|302494689|gb|EFL54449.1| radical SAM domain protein [Finegoldia magna BVS033A4] Length = 423 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 17/103 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL ++ CDT+ + I+ + + I + T Sbjct: 72 CNLRCSYCYEKNI-----CDTERLMIEEENN------SIYEFIYRNIKKSDARIFNIEFT 120 Query: 92 GGEPLLQVD--VPLIQA----LNKRGFEIAVETNGTIEPPQGI 128 GGEPLL L+ L ++ + ++ TNG + + I Sbjct: 121 GGEPLLNKKYIFRLVNKINRNLKEKIIKYSLVTNGILLEKEDI 163 >gi|145639765|ref|ZP_01795367.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae PittII] gi|145271133|gb|EDK11048.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae PittII] gi|309750405|gb|ADO80389.1| Pyruvate formate-lyase activating enzyme [Haemophilus influenzae R2866] Length = 246 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G +V+ L + Sbjct: 21 IRFILFMQGC-----------LMRCKYCHNRDT----WDLEGGKEISVEDLMKEVVTYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A G ++TNG Sbjct: 66 FMNATGGGVTASGGEAVLQAEFVRDWFRACKAEGINTCLDTNG 108 >gi|330808827|ref|YP_004353289.1| coenzyme PQQ synthesis protein E [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376935|gb|AEA68285.1| coenzyme PQQ synthesis protein E [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 389 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C +G + +Q + E G + + + Sbjct: 23 PLWLLAELTYRCPLQCPYCSNPLDF--AEQGQELSTEQWFKVFREAREMGAAQLGF---S 77 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI + GF + T+G Sbjct: 78 GGEPLVRQDLAELIGEARRLGFYTNLITSG 107 >gi|301058107|ref|ZP_07199159.1| molybdenum cofactor biosynthesis protein A [delta proteobacterium NaphS2] gi|300447739|gb|EFK11452.1| molybdenum cofactor biosynthesis protein A [delta proteobacterium NaphS2] Length = 333 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLT 91 N DR + +C++C + +G + R+ ++ +++ + LT Sbjct: 17 NYLRISITDRCNLRCQYC----MPPEGREKLRHEDILSYEEILRLARVAIRLGVDKIRLT 72 Query: 92 GGEPLLQVDVPLI--QALNKRGFE-IAVETNG 120 GGEPL++ D PL+ + ++ G + +++ TNG Sbjct: 73 GGEPLVRKDFPLLLPELMSIPGLKDVSITTNG 104 >gi|218887987|ref|YP_002437308.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758941|gb|ACL09840.1| Radical SAM domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 393 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 8/92 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 + R + +C C + I + +Q +I++ + + Sbjct: 40 PVVVWNMTRRCNLKCVHC---YAQAIDPEGKDEISTEQGKAIIDDL---AAYGAPVMLFS 93 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122 GGEPL+ Q V L + +G + TNGT+ Sbjct: 94 GGEPLVRQDLVELAKHATTKGMRAVISTNGTL 125 >gi|145633596|ref|ZP_01789324.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae 3655] gi|229845160|ref|ZP_04465294.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae 6P18H1] gi|229847286|ref|ZP_04467389.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae 7P49H1] gi|144985802|gb|EDJ92416.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae 3655] gi|229809829|gb|EEP45552.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae 7P49H1] gi|229811871|gb|EEP47566.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae 6P18H1] Length = 246 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G +V+ L + Sbjct: 21 IRFILFMQGC-----------LMRCKYCHNRDT----WDLEGGKEISVEDLMKEVVTYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A + G ++TNG Sbjct: 66 FMNATGGGVTASGGEAVLQAEFVRDWFRACKEEGINTCLDTNG 108 >gi|330812181|ref|YP_004356643.1| coenzyme PQQ synthesis protein E [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380289|gb|AEA71639.1| coenzyme PQQ synthesis protein E [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 389 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C +G + +Q + E G + + + Sbjct: 23 PLWLLAELTYRCPLQCPYCSNPLDF--AEQGQELSTEQWFKVFREAREMGAAQLGF---S 77 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q LI + GF + T+G Sbjct: 78 GGEPLVRQDLAELIGEARRLGFYTNLITSG 107 >gi|288573376|ref|ZP_06391733.1| Radical SAM domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569117|gb|EFC90674.1| Radical SAM domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 312 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 13/101 (12%) Query: 31 GCNLWSGREQDRLSAQC-------RFCDT--DFVGIQGTKGGRYNVDQLADLIEEQWITG 81 GC G D C + CD F G++GG + + +LI Sbjct: 76 GCPYDCGLCPDHRQGTCTAVLEVTKRCDLRCPFCFADGSEGG--SDVPVNELIRRLETLS 133 Query: 82 EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120 ++E L+GGEP ++ D+P +++ GF I + +NG Sbjct: 134 KREECVLQLSGGEPTVRDDLPYIVERARSMGFDFIQLNSNG 174 >gi|225352289|ref|ZP_03743312.1| hypothetical protein BIFPSEUDO_03905 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157536|gb|EEG70875.1| hypothetical protein BIFPSEUDO_03905 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 280 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 36/138 (26%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G + + IE Sbjct: 58 RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYYEAMVKKIERYV 100 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130 + +GGE ++Q + +A + G ++T+G T + ID Sbjct: 101 DLFKATHGGITFSGGESMMQPAFVSRVFRAAKEMGVHTCLDTSGFLGASYTDDMLNDID- 159 Query: 131 ICVSPKAGCDLKIKGGQE 148 +C+ L +K G E Sbjct: 160 LCL-------LDVKSGDE 170 >gi|170761428|ref|YP_001788504.1| glycyl-radical enzyme activating family protein [Clostridium botulinum A3 str. Loch Maree] gi|169408417|gb|ACA56828.1| glycyl-radical enzyme activating family protein [Clostridium botulinum A3 str. Loch Maree] Length = 300 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 6/84 (7%) Query: 43 LSAQCRFCD--TDFV--GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 +C FC T+F ++ G ++ I + + E+ G +GGEP+L Sbjct: 80 DEGKCNFCGKCTNFCPNSVREYVGKDLTSQEIIKEIIKDEVFYEQSGGGVTFSGGEPMLH 139 Query: 99 VDVP--LIQALNKRGFEIAVETNG 120 D +++ RG ++T+G Sbjct: 140 ADFINGILEECKVRGIHTTIDTSG 163 >gi|159045713|ref|YP_001534507.1| putative nitrite reductase heme biosynthesis J protein [Dinoroseobacter shibae DFL 12] gi|157913473|gb|ABV94906.1| putative nitrite reductase heme biosynthesis J protein [Dinoroseobacter shibae DFL 12] Length = 404 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 6/100 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + R + +C+ C T + G Q + +E+ G + +L+G Sbjct: 26 PVVIWNLTRRCNLKCKHCYTVSADVDFP--GELTAAQARETLED---IGRFKVPALILSG 80 Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GEPLL+ D+ L + +A+ TNGT D + Sbjct: 81 GEPLLRDDLFALAKRARALTRVLALSTNGTGVIGSKADRV 120 >gi|305682301|dbj|BAJ16237.1| heme D1 biosynthesis protein NirJ [Rubrivivax gelatinosus IL144] Length = 406 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 17/101 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + D D+ G + VD + D ++ + +L+ Sbjct: 41 CNLTCKHCYALSA------DHDYAGELS----KAEVDTVMDDLKA------YQVPVLILS 84 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GGEPL++ D+ + + F + TNGT+ D I Sbjct: 85 GGEPLMRPDLFEIAERAKAMRFYTGLSTNGTLIDAHCADRI 125 >gi|296125375|ref|YP_003632627.1| Radical SAM domain protein [Brachyspira murdochii DSM 12563] gi|296017191|gb|ADG70428.1| Radical SAM domain protein [Brachyspira murdochii DSM 12563] Length = 265 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 3/70 (4%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +C +C + I+ + +Q+ +++E G K+ R +TG Sbjct: 10 NYIRVSVTDRCNLRCVYCMPEEGIIKKSHNEILTFEQIYSIVKEASELGIKKVR---ITG 66 Query: 93 GEPLLQVDVP 102 GEPL++ ++ Sbjct: 67 GEPLVRKNIE 76 >gi|73670169|ref|YP_306184.1| arylsulfatase regulator [Methanosarcina barkeri str. Fusaro] gi|72397331|gb|AAZ71604.1| arylsulfatase regulator [Methanosarcina barkeri str. Fusaro] Length = 380 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 28/98 (28%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GC A C +C K +++ + +++E G Sbjct: 12 GCP-----------ANCSYC-----WSSEEKSPIMSIETIKEVVE---WLKTFRGDAVTF 52 Query: 91 T--GGEPLL-------QVDVPLIQALNKRGFEIAVETN 119 T GGEPLL + L++ L+ R A++TN Sbjct: 53 TFHGGEPLLAGAEFYREALPLLVEGLSPRKIAFAIQTN 90 >gi|226948345|ref|YP_002803436.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto] gi|226840836|gb|ACO83502.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto] Length = 297 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD-LIEEQWITGEKEGRYCVL 90 CNL C FC + + ++ ++ D ++++ + + Sbjct: 20 CNL-----------ACDFC------PETRRKPQFMPIEIFDKILDQIKPYTDYIYFHVK- 61 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GEPLL D+ + K+ F++ + TNGT+ Sbjct: 62 --GEPLLHPDIDKFLDLSYKKDFKVNITTNGTL 92 >gi|206564198|ref|YP_002234961.1| pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia cenocepacia J2315] gi|198040238|emb|CAR56221.1| coenzyme PQQ synthesis protein E [Burkholderia cenocepacia J2315] Length = 379 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 9/91 (9%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 LW E R C FC + + T G + D +I + G + Sbjct: 11 PLWLLAELTYRCPLHCAFC---YNPVDFATHGAELDTDAWRTVISDARALGAAQ---IGF 64 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL + D+ L+ GF + T+G Sbjct: 65 SGGEPLQRGDLETLVAHARGLGFYTNLITSG 95 >gi|126459538|ref|YP_001055816.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|126249259|gb|ABO08350.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548] Length = 355 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 22/95 (23%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F F+GCN +C +C + G + LA + Q E+ Sbjct: 135 TIF--FAGCNF-----------RCVYCQNWDISQDPEAGVEVTAEALAAM---QIRLREE 178 Query: 84 EGRYCVLTGGEPLLQVDVPLI----QALNKRGFEI 114 R GGEP ++P I + L +RG + Sbjct: 179 GARNINWVGGEPT--PNIPWILKSLKILARRGVNV 211 >gi|107025606|ref|YP_623117.1| pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia cenocepacia AU 1054] gi|116693212|ref|YP_838745.1| pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia cenocepacia HI2424] gi|105894980|gb|ABF78144.1| Coenzyme PQQ biosynthesis protein E [Burkholderia cenocepacia AU 1054] gi|116651212|gb|ABK11852.1| coenzyme PQQ biosynthesis protein E [Burkholderia cenocepacia HI2424] Length = 379 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 9/91 (9%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 LW E R C FC + + T G + D +I + G + Sbjct: 11 PLWLLAELTYRCPLHCAFC---YNPVDFATHGAELDTDAWRTVISDARALGAAQ---IGF 64 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL + D+ L+ GF + T+G Sbjct: 65 SGGEPLQRGDLETLVAHARGLGFYTNLITSG 95 >gi|291300782|ref|YP_003512060.1| molybdenum cofactor biosynthesis protein A [Stackebrandtia nassauensis DSM 44728] gi|290570002|gb|ADD42967.1| molybdenum cofactor biosynthesis protein A [Stackebrandtia nassauensis DSM 44728] Length = 347 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 10/85 (11%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 DR + +CR+C + ++ + T + D+L + G + R LTGGEPLL+ Sbjct: 28 DRCNLRCRYCMPEEEYAWLSSTD--ILSFDELTTVASAFTELGVDKIR---LTGGEPLLR 82 Query: 99 V-DVPLIQALN--KRGFEIAVETNG 120 LI L +R +IA+ TNG Sbjct: 83 PGLDELIGKLATDERITDIALTTNG 107 >gi|157147250|ref|YP_001454569.1| pyruvate formate lyase II activase [Citrobacter koseri ATCC BAA-895] gi|157084455|gb|ABV14133.1| hypothetical protein CKO_03042 [Citrobacter koseri ATCC BAA-895] Length = 213 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119 G +D+L + + + G L+GGE L+Q +Q L + G A+ET Sbjct: 16 GRDITLDELEREVMKDELFFRTSGGGVTLSGGEVLMQAAFATRFLQRLRRFGISCAIETA 75 Query: 120 G 120 G Sbjct: 76 G 76 >gi|89094965|ref|ZP_01167895.1| hypothetical protein MED92_14018 [Oceanospirillum sp. MED92] gi|89080749|gb|EAR59991.1| hypothetical protein MED92_14018 [Oceanospirillum sp. MED92] Length = 477 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 50/134 (37%), Gaps = 39/134 (29%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY-C 88 +GCNL C +C ++G + +V+ +E + +Y Sbjct: 111 TGCNL-----------SCTYCY-KEDLTTPSEGLKMSVETAIQSVEMLLKESPDQRQYNV 158 Query: 89 VLTGGEPLLQVDVPLIQA-----------LNKR-GFEIAVETNGTIEPPQGIDW------ 130 V GGEPL ++PLI+ L R F + TN T+ IDW Sbjct: 159 VFFGGEPL--SNMPLIREVVAYCERRFADLEARVDFTLT--TNATLLNEDLIDWFNEHRF 214 Query: 131 -ICVS---PKAGCD 140 + +S PKA D Sbjct: 215 GLTISMDGPKAMHD 228 >gi|323692405|ref|ZP_08106641.1| hypothetical protein HMPREF9475_01504 [Clostridium symbiosum WAL-14673] gi|323503545|gb|EGB19371.1| hypothetical protein HMPREF9475_01504 [Clostridium symbiosum WAL-14673] Length = 324 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 23/125 (18%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR + C +C ++ F+ + +++ E I G R+ +TGGEPLL Sbjct: 20 DRCNLNCAYCRPENSPFLSRKA----LLTSEEILAFCREAAILG---IRHIKITGGEPLL 72 Query: 98 QVD-VPLIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS---PKAGCDLKIK 144 + D +++ L K G E + + TNG + GID I +S P C + Sbjct: 73 RTDCCSIVEKLKKTPGIETVTLTTNGLLLSEHLGRLKEAGIDGINISMDTPDRACYAALT 132 Query: 145 GGQEL 149 G L Sbjct: 133 GSDRL 137 >gi|68248784|ref|YP_247896.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae 86-028NP] gi|145635283|ref|ZP_01790986.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae PittAA] gi|145637339|ref|ZP_01792999.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae PittHH] gi|145641513|ref|ZP_01797091.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae R3021] gi|68056983|gb|AAX87236.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae 86-028NP] gi|145267427|gb|EDK07428.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae PittAA] gi|145269431|gb|EDK09374.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae PittHH] gi|145273804|gb|EDK13672.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae 22.4-21] Length = 246 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G +V+ L + Sbjct: 21 IRFILFMQGC-----------LMRCKYCHNRDT----WDLEGGKEISVEDLMKEVVTYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A G ++TNG Sbjct: 66 FMNATGGGVTASGGEAVLQAEFVRDWFRACKAEGINTCLDTNG 108 >gi|76800690|ref|YP_325698.1| tRNA-modifying enzyme [Natronomonas pharaonis DSM 2160] gi|76556555|emb|CAI48126.1| predicted iron-sulfur oxidoreductase [Natronomonas pharaonis DSM 2160] Length = 324 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 21/107 (19%) Query: 38 REQDRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWI---------------- 79 + + +C FC D G G + + +AD E Sbjct: 54 TPVVKCNERCVFCWRDHAGHAYELGDVEWDDPEAVADASIELQRKLLSGFGGNDEVPRDV 113 Query: 80 -TGEKEGRYCVLT-GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 E R+ ++ GEP L +P LI+A + R + +NGT Sbjct: 114 FEEAMEPRHVAISLDGEPTLYPYLPELIEAFHDRDITTFLVSNGTRP 160 >gi|309972700|gb|ADO95901.1| Pyruvate formate-lyase activating enzyme [Haemophilus influenzae R2846] Length = 246 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G +V+ L + Sbjct: 21 IRFILFMQGC-----------LMRCKYCHNRDT----WDLEGGKEISVEDLMKEVVTYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A G ++TNG Sbjct: 66 FMNATGGGVTASGGEAVLQAEFVRDWFRACKAEGINTCLDTNG 108 >gi|322383660|ref|ZP_08057411.1| pyruvate-formate lyase activating enzyme-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151872|gb|EFX44815.1| pyruvate-formate lyase activating enzyme-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 199 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 3/109 (2%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKR-GFEIAVETNGT 121 V+++ IE +TGGEP LQ L +A R ++++G Sbjct: 1 MEVEEILAEIESYLPYYRSSNGGITVTGGEPTLQAHFVAELFKACKSRFQLHTTLDSSGF 60 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 E D + V+ DLKI ++ + Q N + + Sbjct: 61 CEIDNVQDLMDVTDLVLLDLKIIDREKHIRLTSQPNDRILKTAKWLSDH 109 >gi|311696028|gb|ADP98901.1| pyrroloquinoline quinone biosynthesis protein PqqE [marine bacterium HP15] Length = 378 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF Q ++ ++ + G + + Sbjct: 12 PLWLLAELTYRCPLQCPYCSNPLDFAQTQ----QELTTEEWVSVLRQGRTMGAAQLGF-- 65 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 +GGEPL+ Q LI G+ + T+G Sbjct: 66 -SGGEPLVRQDLAELIAEARHLGYYTNLITSG 96 >gi|198284278|ref|YP_002220599.1| molybdenum cofactor biosynthesis protein A [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667275|ref|YP_002426939.1| molybdenum cofactor biosynthesis protein A [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248799|gb|ACH84392.1| molybdenum cofactor biosynthesis protein A [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519488|gb|ACK80074.1| molybdenum cofactor biosynthesis protein A [Acidithiobacillus ferrooxidans ATCC 23270] Length = 342 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 5/79 (6%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLI 104 +C +C + G + + D + I R+ TGGEPLL + + Sbjct: 37 RCSYC-SPEEGTPFFVRKDHLQAEEYDRLIR--IFSGLGVRHIRFTGGEPLLHPRILSFV 93 Query: 105 QALNKRGF-EIAVETNGTI 122 + G +I++ TNG + Sbjct: 94 GFARRHGVGKISISTNGVL 112 >gi|330821974|ref|YP_004350836.1| hypothetical protein bgla_2g29090 [Burkholderia gladioli BSR3] gi|327373969|gb|AEA65324.1| hypothetical protein bgla_2g29090 [Burkholderia gladioli BSR3] Length = 386 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 23/142 (16%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R +V + + ++E + Sbjct: 38 CNL-----------ACNGCGKIDY--PDPILNQRLSVQECLEAVDEA------NAPIVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEPLL D+P +++ + KR + + TN + + +D SP + + G +E+ Sbjct: 79 AGGEPLLHRDMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDEYEPSPYFVWSVHLDGDREM 137 Query: 150 -KLVFPQVNVSPENYIGFDFER 170 Q V + + Sbjct: 138 HDHAVSQEGVYDKAVAAIKEAK 159 >gi|322805396|emb|CBZ02960.1| molybdenum cofactor biosynthesis enzyme and related Fe-S oxidoreductases [Clostridium botulinum H04402 065] Length = 261 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 4/59 (6%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ ++++ + + GEPLL D+ + K+GF++ + TNGT+ Sbjct: 1 MPIEIFDKILDQIKPYTDYIYFHVK---GEPLLHPDIDKFLDLSYKKGFKVNITTNGTL 56 >gi|254249963|ref|ZP_04943283.1| Radical SAM [Burkholderia cenocepacia PC184] gi|124876464|gb|EAY66454.1| Radical SAM [Burkholderia cenocepacia PC184] Length = 389 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 9/91 (9%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 LW E R C FC + + T G + D +I + G + Sbjct: 21 PLWLLAELTYRCPLHCAFC---YNPVDFATHGAELDTDAWRTVISDARALGAAQ---IGF 74 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL + D+ L+ GF + T+G Sbjct: 75 SGGEPLQRGDLETLVAHARGLGFYTNLITSG 105 >gi|86742173|ref|YP_482573.1| molybdenum cofactor biosynthesis protein A [Frankia sp. CcI3] gi|86569035|gb|ABD12844.1| GTP cyclohydrolase subunit MoaA [Frankia sp. CcI3] Length = 328 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 14/105 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C G+ G R D++ L+ G LTGGEP+L+ Sbjct: 20 DRCNLRCTYC-MPAEGLAWLPGERMLTDDEVVRLV--GVAVGRLGVTEVRLTGGEPMLRP 76 Query: 100 -DVPLIQALNKR--GFEIAVETNGTIEP-------PQGIDWICVS 134 V L+ L E++V TNG I G+D I VS Sbjct: 77 GLVELVARLAALRPRPELSVTTNGLILARLAGPLRAAGLDRINVS 121 >gi|332111897|gb|EGJ11875.1| radical SAM domain-containing protein [Rubrivivax benzoatilyticus JA2] Length = 406 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 15/119 (12%) Query: 19 HAG-RVAVFCRF---SGCNLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADL 73 G A R SG + R + C+ C + G + ++ + Sbjct: 16 RTGAWPA--VRTPRPSG-PVVIWNLIRRCNLTCKHC---YALSADHDYAGELSKAEVGTV 69 Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 +++ + +L+GGEPL++ D+ + + F + TNGT+ D I Sbjct: 70 MDDLKA---YQVPVLILSGGEPLMRPDLFEIAERAKAMRFYTGLSTNGTLIDLPTADRI 125 >gi|295318511|gb|ADF98888.1| radical SAM domain protein [Clostridium botulinum F str. 230613] Length = 261 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 4/59 (6%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ ++++ + + GEPLL D+ + K+GF++ + TNGT+ Sbjct: 1 MPIEIFDKILDQIKPYTDYIYFHVK---GEPLLHPDIDKFLDLSYKKGFKVNITTNGTL 56 >gi|294792210|ref|ZP_06757358.1| molybdenum cofactor biosynthesis protein A [Veillonella sp. 6_1_27] gi|294457440|gb|EFG25802.1| molybdenum cofactor biosynthesis protein A [Veillonella sp. 6_1_27] Length = 321 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 21/107 (19%) Query: 27 CRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 R S CN C +C + T + + + + + Sbjct: 12 VRLSLTDACNFC-----------CPYC----RPAEITPQSQTQLLSVDEWMTILGAFHHI 56 Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGFE--IAVETNGTIEPPQG 127 + LTGGEPLL + L+ + + G+ I++ TNG++ + Sbjct: 57 GVKAVRLTGGEPLLYPHIEELLGRIKESGWFEDISMTTNGSLLASRA 103 >gi|300022082|ref|YP_003754693.1| coenzyme PQQ biosynthesis protein E [Hyphomicrobium denitrificans ATCC 51888] gi|299523903|gb|ADJ22372.1| coenzyme PQQ biosynthesis protein E [Hyphomicrobium denitrificans ATCC 51888] Length = 383 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E + +C +C ++ V ++ ++ G + + T Sbjct: 16 PLWLVLELTYKCPLKCPWC-SNPVDFD-QYRNELTTEEWKKVLRAGRRLGSLQLGF---T 70 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 GGEP+L+ D+ L+ + G+ + T+G Sbjct: 71 GGEPMLRNDLEELVAEADSLGYYTNLITSG 100 >gi|228927225|ref|ZP_04090288.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121710|ref|ZP_04250933.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus 95/8201] gi|228661754|gb|EEL17371.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus 95/8201] gi|228832551|gb|EEM78125.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 337 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + +Q D++ L G + R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPD--YAFLQEEF--LLTFDEIERLARLFIRMGVNKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQALNKRG--FEIAVETNG 120 GEPLL+ D+P LI L K +I + TNG Sbjct: 75 GEPLLRKDLPHLIARLAKLDGLKDIGLTTNG 105 >gi|213692582|ref|YP_002323168.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524043|gb|ACJ52790.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458734|dbj|BAJ69355.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 293 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 40/140 (28%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G +D + ++ Sbjct: 71 RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMIKKVDRYK 113 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQA-LNKR---GFEIAVETNG------TIEPPQGI 128 + +GGE ++Q + + G ++T+G T E + I Sbjct: 114 DLFKATHGGITFSGGESMMQP--AFVSRVFHAAREMGVHTCLDTSGFLNTSYTDEMLEDI 171 Query: 129 DWICVSPKAGCDLKIKGGQE 148 D +C+ L +K G E Sbjct: 172 D-LCL-------LDVKSGDE 183 >gi|167588114|ref|ZP_02380502.1| pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia ubonensis Bu] Length = 378 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 9/91 (9%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 LW E R C FC + + T G + D +I + G + Sbjct: 11 PLWLLAELTYRCPLHCAFC---YNPVDFATHGPELDTDAWRTVISDARALGAAQ---IGF 64 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL + D+ L+ GF + T+G Sbjct: 65 SGGEPLQRGDLETLVAHARGLGFYTNLITSG 95 >gi|228920856|ref|ZP_04084195.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838787|gb|EEM84089.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 337 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + +Q D++ L G + R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPD--YAFLQEEF--LLTFDEIERLARLFISMGVNKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQAL-NKRGFE-IAVETNG 120 GEPLL+ D+P LI L G + I + TNG Sbjct: 75 GEPLLRKDLPQLIARLTKLEGLKDIGLTTNG 105 >gi|224824383|ref|ZP_03697491.1| Radical SAM domain protein [Lutiella nitroferrum 2002] gi|224603802|gb|EEG09977.1| Radical SAM domain protein [Lutiella nitroferrum 2002] Length = 394 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + DT F G + ++ ++E+ G +L+ Sbjct: 36 CNLTCKHCYSVSA------DTVF-------PGELSTAEVFTVMEDLRAFG---VPVLILS 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPL++ D+ + Q + GF + + +NGT+ Sbjct: 80 GGEPLMRPDIYDIGQRAKQLGFYVGLSSNGTL 111 >gi|221201327|ref|ZP_03574366.1| molybdenum cofactor biosynthesis protein A [Burkholderia multivorans CGD2M] gi|221208807|ref|ZP_03581805.1| molybdenum cofactor biosynthesis protein A [Burkholderia multivorans CGD2] gi|221214113|ref|ZP_03587086.1| molybdenum cofactor biosynthesis protein A [Burkholderia multivorans CGD1] gi|221166290|gb|EED98763.1| molybdenum cofactor biosynthesis protein A [Burkholderia multivorans CGD1] gi|221171263|gb|EEE03712.1| molybdenum cofactor biosynthesis protein A [Burkholderia multivorans CGD2] gi|221178595|gb|EEE11003.1| molybdenum cofactor biosynthesis protein A [Burkholderia multivorans CGD2M] Length = 370 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 15/109 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C V + ++ + IE I +TGGEPLL+ Sbjct: 45 DRCNFRCVYCMPREVFGKDYPFLPHSALLTHEEIERVARIFVAHGVEKIRITGGEPLLRK 104 Query: 100 DVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 ++ LI+ L + R ++ + TNG++ G+ + VS Sbjct: 105 NLEFLIERLARLTTRDGRPLDLTLTTNGSLLARKARALKDAGLTRVTVS 153 >gi|297203855|ref|ZP_06921252.1| radical SAM domain-containing protein [Streptomyces sviceus ATCC 29083] gi|197711911|gb|EDY55945.1| radical SAM domain-containing protein [Streptomyces sviceus ATCC 29083] Length = 340 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 38 CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + +++ L + + + TN + + +D SP + I G +E Sbjct: 80 GGEPLMHPQIDEIVRQLVAKKKYVFLCTN-AMLLRKKMDKFKPSPYFAFAVHIDGLRE 136 >gi|126459981|ref|YP_001056259.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|126249702|gb|ABO08793.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548] Length = 356 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 9/91 (9%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 LW + +C +C F + + I E GG Sbjct: 2 LWFLLTTGACNLRCNYCGGSFSQKHSPWRPTVSPGDVVKFIAE-----RDSSPTVFFYGG 56 Query: 94 EPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 EPLL VD V +++AL F I TNGT+ Sbjct: 57 EPLLNVDYIVQVMEALPHARFGIQ--TNGTL 85 >gi|161525364|ref|YP_001580376.1| molybdenum cofactor biosynthesis protein A [Burkholderia multivorans ATCC 17616] gi|189349899|ref|YP_001945527.1| molybdenum cofactor biosynthesis protein A [Burkholderia multivorans ATCC 17616] gi|160342793|gb|ABX15879.1| molybdenum cofactor biosynthesis protein A [Burkholderia multivorans ATCC 17616] gi|189333921|dbj|BAG42991.1| molybdenum cofactor biosynthesis protein A [Burkholderia multivorans ATCC 17616] Length = 370 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 15/109 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C V + ++ + IE I +TGGEPLL+ Sbjct: 45 DRCNFRCVYCMPREVFGKDYPFLPHSALLTHEEIERVARIFVAHGVEKIRITGGEPLLRK 104 Query: 100 DVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134 ++ LI+ L + R ++ + TNG++ G+ + VS Sbjct: 105 NLEFLIERLARLTTREGRPLDLTLTTNGSLLARKARALKDAGLTRVTVS 153 >gi|83311391|ref|YP_421655.1| Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1] gi|82946232|dbj|BAE51096.1| Predicted Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1] Length = 442 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 16/98 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C + + + + D + + + + + + + Sbjct: 169 CNLRCTM--------CGW----EIWKDNSG---FMEDAVFERVIAEGKACGIKTMHILAG 213 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGI 128 GEP L V +++ GF++ + TNGT P I Sbjct: 214 QGEPFLHPRVFEMLERAVAEGFQVGIVTNGTPFTPDKI 251 >gi|84497391|ref|ZP_00996213.1| hypothetical protein JNB_14393 [Janibacter sp. HTCC2649] gi|84382279|gb|EAP98161.1| hypothetical protein JNB_14393 [Janibacter sp. HTCC2649] Length = 515 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 2/73 (2%) Query: 50 CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALN 108 C T F ++Q+ I+ + +L+GGEP+L L++A+ Sbjct: 123 CPTCFAESSPALASVAPLEQVLASIDTRLSRENGRIDVLMLSGGEPMLYPQLEELLEAVI 182 Query: 109 KRGF-EIAVETNG 120 R I + TNG Sbjct: 183 ARPIVRILINTNG 195 >gi|307705441|ref|ZP_07642296.1| hypothetical protein ydeM [Streptococcus mitis SK597] gi|307620976|gb|EFO00058.1| hypothetical protein ydeM [Streptococcus mitis SK597] Length = 352 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 16/96 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C + + + Y+ ++ + I ++ + + T Sbjct: 3 CNLT-----------CSYCFENDKDRKPSLSSEYDGKKIVNFILDELNFKKYKSLDICFT 51 Query: 92 GGEPL--LQVDVPLIQALNKR---GFEIAVETNGTI 122 GGEPL Q L + L+++ + TNGTI Sbjct: 52 GGEPLYNFQFIRNLCETLDEKLAIPISYTLITNGTI 87 >gi|302339995|ref|YP_003805201.1| pyruvate formate-lyase activating enzyme [Spirochaeta smaragdinae DSM 11293] gi|301637180|gb|ADK82607.1| pyruvate formate-lyase activating enzyme [Spirochaeta smaragdinae DSM 11293] Length = 245 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 54/178 (30%), Gaps = 52/178 (29%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C +C DT + T G ++ + + Sbjct: 22 IRFLIFTQGCPL-----------RCLYCHNPDT----WKRTGGKEVTAHEIIETARKYKN 66 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEP------PQGIDWI 131 G +TGGEPL Q D L+ G AV+T+G P D + Sbjct: 67 YLLASGGGITITGGEPLFQADFVQALLLEAKAAGIHTAVDTSGFAPPAARKAVLPHADLV 126 Query: 132 CVSPKAGCDLKIKGG------------QELK----------LVFPQVNVSPENYIGFD 167 + K+ K ELK +V P + PE+ Sbjct: 127 LLDIKSAVPALFKKISGVSITYTLATLNELKEWNVPVWIRHVVVPGLTDKPEDAEKLA 184 >gi|170737521|ref|YP_001778781.1| coenzyme PQQ biosynthesis protein E [Burkholderia cenocepacia MC0-3] gi|169819709|gb|ACA94291.1| coenzyme PQQ biosynthesis protein E [Burkholderia cenocepacia MC0-3] Length = 379 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 9/91 (9%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 LW E R C FC + + T G + D +I + G + Sbjct: 11 PLWLLAELTYRCPLHCAFC---YNPVDFATHGAELDTDAWRTVISDARALGAAQ---IGF 64 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL + D+ L+ GF + T+G Sbjct: 65 SGGEPLQRGDLETLVAHARGLGFYTNLITSG 95 >gi|317484665|ref|ZP_07943566.1| radical SAM superfamily protein [Bilophila wadsworthia 3_1_6] gi|316924021|gb|EFV45206.1| radical SAM superfamily protein [Bilophila wadsworthia 3_1_6] Length = 395 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 8/92 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 + R + +C C + + + +Q +I + + + Sbjct: 40 PVVVWNMTRRCNLKCVHC---YAQAVDPDGKDEISTEQGKAIISDL---AAYGAPVMLFS 93 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122 GGEPL+ Q L ++G + TNGT+ Sbjct: 94 GGEPLVRQDLPELASYATEKGMRAVISTNGTL 125 >gi|313112748|ref|ZP_07798396.1| molybdenum cofactor biosynthesis protein A [Faecalibacterium cf. prausnitzii KLE1255] gi|310624947|gb|EFQ08254.1| molybdenum cofactor biosynthesis protein A [Faecalibacterium cf. prausnitzii KLE1255] Length = 322 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 65/184 (35%), Gaps = 35/184 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +CR+C G ++ + + + + + Sbjct: 20 CNL-----------RCRYC-----MPDGVPKLAHEDILTYEEFLRLAALFAQCGIDTVRI 63 Query: 91 TGGEPLLQVDVP-LIQALNK-RGF-EIAVETNGTI-------EPPQGIDWICVSPKAGCD 140 TGGEPL++ V L L G +A+ TNG + G+D + +S Sbjct: 64 TGGEPLVRRGVEQLTAGLKAIPGIRRVALTTNGVLLAQKLPALLAAGLDSVNISLDTLHP 123 Query: 141 L---KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP- 196 +I G EL V Q + G + + P G E +LA ++ ++P Sbjct: 124 ETFRRITGKDELAAV--QNGIRAALASGIPVKLNCV-PQPGVNEGELESLA-AFAQEHPL 179 Query: 197 KWRL 200 + R Sbjct: 180 QVRF 183 >gi|304438271|ref|ZP_07398212.1| pyruvate formate-lyase activating enzyme [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368637|gb|EFM22321.1| pyruvate formate-lyase activating enzyme [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 251 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 22/102 (21%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 E F ++ G G VF GC +C++C G R Sbjct: 11 TESFGSVDGPGIRFI----VFV--QGC-----------RYRCQYCHNPETWGLGGGEERT 53 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107 D L + + E+ G ++GGEPLLQ +P + Sbjct: 54 PADVLRQALRYRPYWKERGG--ITVSGGEPLLQ--LPFVTEF 91 >gi|303247822|ref|ZP_07334090.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ] gi|302490723|gb|EFL50624.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ] Length = 453 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 18/94 (19%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 + CNL C C F T V L++ I Sbjct: 100 TARCNL-----------SCPVC---FASAGNTPPPDPEVPALSERFAR--IFEATGPVNV 143 Query: 89 VLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120 L+GGEP ++ D+P ++ A K GF + + TNG Sbjct: 144 QLSGGEPTVRNDLPEVVAACRKAGFSFVQLNTNG 177 >gi|294816069|ref|ZP_06774712.1| Radical SAM domain protein [Streptomyces clavuligerus ATCC 27064] gi|326444411|ref|ZP_08219145.1| hypothetical protein SclaA2_25236 [Streptomyces clavuligerus ATCC 27064] gi|294328668|gb|EFG10311.1| Radical SAM domain protein [Streptomyces clavuligerus ATCC 27064] Length = 340 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 38 CNLAC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + +++ L R + + TN + + +D S + I G +E Sbjct: 80 GGEPLMHPQIDEIVRELVARRKYVFLCTN-ALLLRKKLDKFTPSRYFAFAVHIDGLRE 136 >gi|289577626|ref|YP_003476253.1| radical SAM protein [Thermoanaerobacter italicus Ab9] gi|289527339|gb|ADD01691.1| Radical SAM domain protein [Thermoanaerobacter italicus Ab9] Length = 453 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 19/104 (18%) Query: 22 RVAVFCR-FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 + F + CNL C +C + +K + + ++ + Sbjct: 84 KPQFFIYVTTECNL-----------NCPYC---YQRDYKSKNITISKKHVDSVVTTIDLL 129 Query: 81 GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI--AVE--TNG 120 +KE ++ V+ GGEPLL + +I+ + R I VE TNG Sbjct: 130 SKKENKHLVIFGGEPLLPQNKQIIEYMFDRFKTIDATVEIVTNG 173 >gi|238789327|ref|ZP_04633114.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia frederiksenii ATCC 33641] gi|238722659|gb|EEQ14312.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia frederiksenii ATCC 33641] Length = 215 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 31/163 (19%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101 +C +C DT G V++L G +GGE +LQ + Sbjct: 2 RCLYCHNRDT----WDTHGGKEVTVEELVKEAITYRHFMNASGGGVTASGGEAILQAEFV 57 Query: 102 -PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155 +A ++ G ++TNG + + +D DL + +++ Q Sbjct: 58 RDWFRACHEEGIHTCLDTNGFVRRYDPVIDELLD--------ATDLVMLDLKQMDDSVHQ 109 Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198 V N+ +F R+ + N I Y P W Sbjct: 110 NLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV-PGW 143 >gi|298529802|ref|ZP_07017205.1| Radical SAM domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511238|gb|EFI35141.1| Radical SAM domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 360 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 17/96 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C G + Q LI+ G + T Sbjct: 28 CNL-----------ACSHC--RAEAHPEPYPGELDTAQARSLIDTFPQVG---NPVVIFT 71 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 GGEPLL+ D+ LI + +G + NGT+ P+ Sbjct: 72 GGEPLLRPDIFELISYADSQGLRCVMAPNGTLITPE 107 >gi|218903282|ref|YP_002451116.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH820] gi|218538331|gb|ACK90729.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH820] Length = 337 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + +Q D++ L G + R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPD--YAFLQEEF--LLTFDEIERLARLFIRMGVNKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQALNKRG--FEIAVETNG 120 GEPLL+ D+P LI L K +I + TNG Sbjct: 75 GEPLLRKDLPHLIARLAKLDGLKDIGLTTNG 105 >gi|297543929|ref|YP_003676231.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841704|gb|ADH60220.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 453 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 19/104 (18%) Query: 22 RVAVFCR-FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 + F + CNL C +C + +K + + ++ + Sbjct: 84 KPQFFIYVTTECNL-----------NCPYC---YQRDYKSKNITISKKHVDSVVTTIDLL 129 Query: 81 GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI--AVE--TNG 120 +KE ++ V+ GGEPLL + +I+ + R I VE TNG Sbjct: 130 SKKENKHLVIFGGEPLLPQNKQIIEYMFDRFKTIDATVEIVTNG 173 >gi|254515478|ref|ZP_05127538.1| molybdenum cofactor biosynthesis protein A [gamma proteobacterium NOR5-3] gi|219675200|gb|EED31566.1| molybdenum cofactor biosynthesis protein A [gamma proteobacterium NOR5-3] Length = 361 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 13/87 (14%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D FV K +++LA + + G ++ R LTGGEPL+ Sbjct: 51 DRCDFRCVYCMAEDMTFV----PKSEILTLEELAQVAQAFVNLGVRKIR---LTGGEPLV 103 Query: 98 -QVDVPLIQALNKR-GF-EIAVETNGT 121 + L++ L G E+ + TNG+ Sbjct: 104 RHNIMQLVEQLGAMPGLDELVMTTNGS 130 >gi|218281753|ref|ZP_03488109.1| hypothetical protein EUBIFOR_00677 [Eubacterium biforme DSM 3989] gi|218217204|gb|EEC90742.1| hypothetical protein EUBIFOR_00677 [Eubacterium biforme DSM 3989] Length = 241 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 24/101 (23%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC++ +C+FC DT K NV+ + Sbjct: 23 IFM--QGCHM-----------RCKFCHNADT-----WKVKEPDQNVETVLKKALRYRPY- 63 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 KE ++GGEPLLQ+D + L K G ++T G Sbjct: 64 WKENGGITVSGGEPLLQIDFLIELFTQAKKEGVHTTLDTCG 104 >gi|121534710|ref|ZP_01666531.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1] gi|121306730|gb|EAX47651.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1] Length = 327 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 7/82 (8%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104 C C + + + L+ E G + +L+GGEPLL+ D+ LI Sbjct: 14 NCLHC---YRDAGAKRADELTTAEGKKLLGEIAKAG---FKIMILSGGEPLLRPDIYELI 67 Query: 105 QALNKRGFEIAVETNGTIEPPQ 126 + G + TNGT+ P+ Sbjct: 68 RHARAVGLRPVIGTNGTLIAPE 89 >gi|25989718|gb|AAN75022.1| Pfla [Rhodospirillum rubrum] Length = 201 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 88 CVLTGGEPLLQVDV--PLIQALNKR-GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144 ++GGEPL+Q D L+ L + G A++T G + W P L IK Sbjct: 30 VTVSGGEPLMQADFTGALLARLKDQLGLHTALDTQGFLHAGVSDRWF--DPVDLVLLDIK 87 Query: 145 GGQ 147 Sbjct: 88 HSD 90 >gi|328542189|ref|YP_004302298.1| Nitrite reductase heme biosynthesis J protein [Polymorphum gilvum SL003B-26A1] gi|326411939|gb|ADZ69002.1| Nitrite reductase heme biosynthesis J protein [Polymorphum gilvum SL003B-26A1] Length = 406 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 7/101 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + R + +CR C T G + D+ ++++ G +L+G Sbjct: 28 PVVIWNLTRRCNLRCRHCYT--TSADVPFPGELSHDEAMAVLDDLKAFGIPA---LILSG 82 Query: 93 GEPL-LQVDVPLIQALNKRGFE-IAVETNGTIEPPQGIDWI 131 GEPL L + F +A+ TNGT D + Sbjct: 83 GEPLSRFDFFELAERARDLKFRHLALSTNGTRLAGANADRV 123 >gi|209519755|ref|ZP_03268542.1| pyruvate formate-lyase activating enzyme [Burkholderia sp. H160] gi|209499828|gb|EDZ99896.1| pyruvate formate-lyase activating enzyme [Burkholderia sp. H160] Length = 284 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF +GC +C+FC DT G V + I + Sbjct: 62 IRFVAFLTGC-----------WLRCQFCHNPDT----WHKHNGHPVTVARAMREIGKYAQ 106 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 + L+GGEP++Q + + + + + G ++T+G Sbjct: 107 VLKISRGGLTLSGGEPMVQREFTMEIFRRCKQLGLHTCIDTSG 149 >gi|301168830|emb|CBW28421.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae 10810] Length = 246 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G +V+ L + Sbjct: 21 IRFILFMQGC-----------LMRCKYCHNRDT----WDLEGGKEISVEDLMKEVVTYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A + G ++TNG Sbjct: 66 FMNATGGGVTASGGEAVLQAEFVRDWFRACKEEGINTCLDTNG 108 >gi|251794635|ref|YP_003009366.1| radical SAM protein [Paenibacillus sp. JDR-2] gi|247542261|gb|ACS99279.1| Radical SAM domain protein [Paenibacillus sp. JDR-2] Length = 480 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 15/107 (14%) Query: 27 CRFSGCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIE 75 R GC G D C C + G +++Q+ + + Sbjct: 79 IR-YGCPYDCGLCPDHEQHSCLTLLEITERCNLQCPICYAESSPHAGSYRSLEQI-EFML 136 Query: 76 EQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETNG 120 + + E E ++GGEP + ++ + + + V TNG Sbjct: 137 DAIVRNEGEPDIVQISGGEPTIHPQFFEILDLVKSKPIKHVMVNTNG 183 >gi|148827317|ref|YP_001292070.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae PittGG] gi|260582394|ref|ZP_05850186.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus influenzae NT127] gi|148718559|gb|ABQ99686.1| pyruvate formate-lyase activating enzyme [Haemophilus influenzae PittGG] gi|260094545|gb|EEW78441.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus influenzae NT127] Length = 246 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G +V+ L + Sbjct: 21 IRFILFMQGC-----------LMRCKYCHNRDT----WDLEGGKEISVEDLMKEVVTYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A + G ++TNG Sbjct: 66 FMNATGGGVTASGGEAVLQAEFVRDWFRACKEEGINTCLDTNG 108 >gi|16272144|ref|NP_438347.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae Rd KW20] gi|260580940|ref|ZP_05848764.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus influenzae RdAW] gi|1172447|sp|P43751|PFLA_HAEIN RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName: Full=Formate-C-acetyltransferase-activating enzyme 1; AltName: Full=PFL-activating enzyme 1 gi|1573135|gb|AAC21848.1| pyruvate formate-lyase activating enzyme (act) [Haemophilus influenzae Rd KW20] gi|260092429|gb|EEW76368.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus influenzae RdAW] Length = 246 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G +V+ L + Sbjct: 21 IRFILFMQGC-----------LMRCKYCHNRDT----WDLEGGKEISVEDLMKEVVTYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A + G ++TNG Sbjct: 66 FMNATGGGVTASGGEAVLQAEFVRDWFRACKEEGINTCLDTNG 108 >gi|317485566|ref|ZP_07944443.1| radical SAM superfamily protein [Bilophila wadsworthia 3_1_6] gi|316923246|gb|EFV44455.1| radical SAM superfamily protein [Bilophila wadsworthia 3_1_6] Length = 455 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 21/106 (19%) Query: 31 GCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 GC G D R + +C C + +++++A ++ Sbjct: 84 GCPFDCGLCPDHAQHTCTGLIEVTGRCNLRCPVC---YASAGEQVAPEPSLERIAFQMDR 140 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNG 120 L+GGEP ++ D+P +I+ RGF I TNG Sbjct: 141 LRQASGAC--NVQLSGGEPTVRDDLPEIIRMAKARGFALIQCNTNG 184 >gi|312961553|ref|ZP_07776054.1| heme d1 biosynthesis protein [Pseudomonas fluorescens WH6] gi|311284232|gb|EFQ62812.1| heme d1 biosynthesis protein [Pseudomonas fluorescens WH6] Length = 393 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 6/100 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + R + C+ C + +I++ G R +L+G Sbjct: 29 PVVIWNLLRRCNLTCKHC--YATSADSVFRDELDTPAALQVIDDLHAAG---VRVLILSG 83 Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GEPLL+ D+ L K F +A+ +NGT+ I I Sbjct: 84 GEPLLREDLFELSAYARKLKFFVALSSNGTLINEANIQQI 123 >gi|149187338|ref|ZP_01865636.1| putative pyruvate formate-lyase 3 activating enzyme [Vibrio shilonii AK1] gi|148838874|gb|EDL55813.1| putative pyruvate formate-lyase 3 activating enzyme [Vibrio shilonii AK1] Length = 299 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 5/77 (6%) Query: 50 CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQAL 107 C T + + G + L D + + ++ +GGEPL+Q D+ L + L Sbjct: 91 CPTQALTVCGEDAQQ---KMLFDTLMKDKPFYDQSSGGVTFSGGEPLMQSDLVASLAKQL 147 Query: 108 NKRGFEIAVETNGTIEP 124 G AVET + Sbjct: 148 QAEGVNTAVETCMHVPW 164 >gi|92084844|emb|CAF04130.1| pyruvate formate-lyase activating enzyme [Chlamydomonas reinhardtii] Length = 327 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 61/183 (33%), Gaps = 28/183 (15%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF GC + +C FC G + + ++A I+ + Sbjct: 106 VFV--QGC-----------AMRCLFCSNPGTWTLK-GGNKTSSKEIAADIKRVRNYLKPR 151 Query: 85 GRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET--NGTIE-----PPQGIDWICVSP 135 G ++GGE +LQ + Q ++ G V+T GT D + Sbjct: 152 GG-ITISGGEAMLQPHFVSTVFQEVHALGLNTTVDTTGQGTKAGNWDVVLPHTDLVLFCI 210 Query: 136 KAGCDLKIKG--GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 K +K + G + + + E I F + P +++ L I +C Sbjct: 211 KHIDPIKYEALTGMKQRGASGFADQLAERKIPFYLRYVYI-PGYTDGVKDIDKL-IEWCK 268 Query: 194 QNP 196 Q P Sbjct: 269 QQP 271 >gi|76801421|ref|YP_326429.1| molybdopterin-based tungsten cofactor biosynthesis protein 2 [Natronomonas pharaonis DSM 2160] gi|76557286|emb|CAI48862.1| molybdopterin-based tungsten cofactor biosynthesis protein 2 [Natronomonas pharaonis DSM 2160] Length = 400 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 8/92 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGT-KGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 + +R + +C C + G + K G + L+++ + + + Sbjct: 38 PVVVWNTTNRCNLKCVHC---YAGAETEAKAGELTTTEGKRLLDDL---ADYGAPVVLFS 91 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEP+++ D+ L+ G + TNGT+ Sbjct: 92 GGEPMVREDLTELVAYAADAGIRPVLSTNGTL 123 >gi|308273606|emb|CBX30208.1| hypothetical protein N47_D30170 [uncultured Desulfobacterium sp.] Length = 341 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118 KG Y ++L +++ + + +GGEP +++ L RG A++T Sbjct: 124 KGRYYEPEELVEILLQDVRFFDHSKGGVTFSGGEPTQHCLYLGRVLRKLKDRGIHTALQT 183 Query: 119 NG 120 G Sbjct: 184 CG 185 >gi|299136219|ref|ZP_07029403.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8] gi|298602343|gb|EFI58497.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8] Length = 370 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 18/96 (18%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWIT--GEKEGRYCVLTG 92 R + C +C DT + + + + + D+I + + VL G Sbjct: 12 SRCNINCSYCYVYNQGDTSWQRM----PKHMSFEIVEDVIRQLATLYRDQDHPFAVVLHG 67 Query: 93 GEPLLQV---DVPLIQALNK---RGFEIAVETNGTI 122 GEPLL L++ L +++TNGT+ Sbjct: 68 GEPLLLPRNILEALLKGLADCLPATCSRSIQTNGTL 103 >gi|171742683|ref|ZP_02918490.1| hypothetical protein BIFDEN_01797 [Bifidobacterium dentium ATCC 27678] gi|306822547|ref|ZP_07455925.1| pyruvate formate-lyase activating enzyme [Bifidobacterium dentium ATCC 27679] gi|171278297|gb|EDT45958.1| hypothetical protein BIFDEN_01797 [Bifidobacterium dentium ATCC 27678] gi|304554092|gb|EFM42001.1| pyruvate formate-lyase activating enzyme [Bifidobacterium dentium ATCC 27679] Length = 298 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 40/140 (28%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G ++ + I+ Sbjct: 76 RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLEAMIKKIDRYA 118 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG------TIEPPQGI 128 + G +GGE ++Q + + + G ++T+G T E I Sbjct: 119 DLFKATGGGITFSGGESMMQP--AFVSRVFRASKEMGVHTCLDTSGFLNRNYTDEMIDDI 176 Query: 129 DWICVSPKAGCDLKIKGGQE 148 D +C+ L +K G E Sbjct: 177 D-LCL-------LDVKSGDE 188 >gi|326434948|gb|EGD80518.1| molybdenum cofactor synthesis 1 isoform 2 [Salpingoeca sp. ATCC 50818] Length = 399 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 21/94 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + K D+L L G + R LT Sbjct: 96 CNL-----------RCQYCMPEEGVQLSPKDELLTFDELVRLARIFASNGVSKIR---LT 141 Query: 92 GGEPLLQVDV-PLIQALNKRGFE----IAVETNG 120 GGEPLL + LI+ RG + + TNG Sbjct: 142 GGEPLLYPQLSDLIREF--RGMPGIESVGITTNG 173 >gi|302543877|ref|ZP_07296219.1| putative Coenzyme PQQ synthesis protein [Streptomyces hygroscopicus ATCC 53653] gi|302461495|gb|EFL24588.1| putative Coenzyme PQQ synthesis protein [Streptomyces himastatinicus ATCC 53653] Length = 369 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 6/79 (7%) Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQA-LNK 109 + TK G Y D + E+ I E R LTGGEP + D+ I A + Sbjct: 41 AHCFVSATKRGDYMP---LDGVRERLIPQLAEARVNRVTLTGGEPFMHPDLLQITADFRE 97 Query: 110 RGFEIAVETNGTIEPPQGI 128 G + + TN T+ + I Sbjct: 98 AGMGVGLCTNATMVTDEQI 116 >gi|108760287|ref|YP_632108.1| radical SAM domain-containing protein [Myxococcus xanthus DK 1622] gi|108464167|gb|ABF89352.1| radical SAM domain protein [Myxococcus xanthus DK 1622] Length = 332 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 16/128 (12%) Query: 29 FSGC------NLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 F GC + G + C C + ++ R + Q + +E G Sbjct: 29 FEGCVPVPRSPIGCGWLVTAPCNLVCIHC---YGNVEDLPSKRLSTPQQLKVADEVIRAG 85 Query: 82 EKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140 +L+GGEPL++ D + +I L G + TNGT Q + VS + Sbjct: 86 IMRQ---ILSGGEPLMRRDTLNVIDKLTDHGVATILGTNGTFLTQQMM--KTVSRCTRVE 140 Query: 141 LKIKGGQE 148 + + E Sbjct: 141 ISLDSMDE 148 >gi|325122193|gb|ADY81716.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter calcoaceticus PHEA-2] Length = 384 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 58/174 (33%), Gaps = 20/174 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C D+ + + + ++ G + + Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFGVFDQARQMGAVQLGF-- 61 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140 +GGEPL+ Q L+ +++GF + T+G G+D I VS +A Sbjct: 62 -SGGEPLVRQDLEQLVAHAHQQGFYTNLITSGMGLTEQRIADLKQAGLDHIQVSFQASDP 120 Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 + K F Q +D+ L + + I C + Sbjct: 121 VVNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIEQIIELCLE 173 >gi|319954255|ref|YP_004165522.1| gtp cyclohydrolase subunit moaa [Cellulophaga algicola DSM 14237] gi|319422915|gb|ADV50024.1| GTP cyclohydrolase subunit MoaA [Cellulophaga algicola DSM 14237] Length = 327 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 16/98 (16%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 N DR + +C +C GI + +D+L L + G + R +T Sbjct: 11 NYLRLAVTDRCNLRCNYC-MPSEGIDFAENDKLFTIDELIRLSQILITQGITKIR---IT 66 Query: 92 GGEP-----LLQVDVPL--IQALNKRGFEIAVETNGTI 122 GGEP L+ + L I AL I++ TN T+ Sbjct: 67 GGEPFVRKDLMVLLRELSKIDALED----ISITTNATV 100 >gi|300718350|ref|YP_003743153.1| Pyrroloquinoline quinone biosynthesis protein E [Erwinia billingiae Eb661] gi|299064186|emb|CAX61306.1| Pyrroloquinoline quinone biosynthesis protein E [Erwinia billingiae Eb661] Length = 366 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 10/91 (10%) Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 R QC +C DF + +Q ++ ++ G + + +GGEPL++ Sbjct: 8 RCPLQCPYCSNPLDFAQQEKE----LTTEQWIEVFKQARQMGAVQLGF---SGGEPLVRK 60 Query: 100 DVP-LIQALNKRGFEIAVETNGTIEPPQGID 129 D+P LI+A GF + T+G + ID Sbjct: 61 DLPELIRAARDLGFYTNLITSGIGLTEKKID 91 >gi|296132655|ref|YP_003639902.1| Radical SAM domain protein [Thermincola sp. JR] gi|296031233|gb|ADG82001.1| Radical SAM domain protein [Thermincola potens JR] Length = 391 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C C + K G ++ I++ E + + Sbjct: 47 CNL-----------KCIHC---YAHADAKKFEGELTTEEAKKFIDDL---AEFKVPVLLF 89 Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +GGEPL++ D L + +G + TNGT+ Sbjct: 90 SGGEPLIRPDFFELAEYAASKGIRPTISTNGTL 122 >gi|260460192|ref|ZP_05808444.1| Radical SAM domain protein [Mesorhizobium opportunistum WSM2075] gi|259033837|gb|EEW35096.1| Radical SAM domain protein [Mesorhizobium opportunistum WSM2075] Length = 382 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 27/114 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE------- 84 CNL C +C ++ G + R Q++D + + + Sbjct: 22 CNL-----------DCSYC---YIYHMGDEAWRSQPKQMSDAVIQMVAQRLSDQLALQAV 67 Query: 85 GRYCVLTGGEPLL---QVDVPLIQALNK---RGFEIAVETNGTIEPPQGIDWIC 132 VL GGEPLL L I ++TNG + + ID + Sbjct: 68 PFSVVLHGGEPLLLGATRLEHFCATLRGVLPHPCGIHIQTNGALISDRIIDVLV 121 >gi|229132987|ref|ZP_04261829.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BDRD-ST196] gi|228650484|gb|EEL06477.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BDRD-ST196] Length = 337 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + +Q D++ L G + R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPD--YAFLQEEF--LLTFDEIERLARLFISMGVNKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQAL-NKRGFE-IAVETNG 120 GEPLL+ D+P LI L G + I + TNG Sbjct: 75 GEPLLRKDLPKLIARLTKLEGLKDIGLTTNG 105 >gi|225405366|ref|ZP_03760555.1| hypothetical protein CLOSTASPAR_04586 [Clostridium asparagiforme DSM 15981] gi|225043125|gb|EEG53371.1| hypothetical protein CLOSTASPAR_04586 [Clostridium asparagiforme DSM 15981] Length = 317 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 G V +L L+EE E G LTGGE Q + L+ A + G A+ET Sbjct: 115 GEMKTVSELLKLVEEDAAFYELSGGGVTLTGGECTSQPEACKNLLMACRQEGIHTAIETC 174 Query: 120 G 120 G Sbjct: 175 G 175 >gi|14591469|ref|NP_143549.1| tRNA-modifying enzyme [Pyrococcus horikoshii OT3] gi|159795643|pdb|2YX0|A Chain A, Crystal Structure Of P. Horikoshii Tyw1 gi|3258136|dbj|BAA30819.1| 342aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 342 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 GEP+L + L++ +KRGF + TNGTI Sbjct: 151 GEPMLYPYMGDLVEEFHKRGFTTFIVTNGTIP 182 >gi|163939949|ref|YP_001644833.1| molybdenum cofactor biosynthesis protein A [Bacillus weihenstephanensis KBAB4] gi|163862146|gb|ABY43205.1| molybdenum cofactor biosynthesis protein A [Bacillus weihenstephanensis KBAB4] Length = 337 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + +Q D++ L G + R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPD--YAFLQEEF--LLTFDEIERLARLFISMGVNKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQAL-NKRGFE-IAVETNG 120 GEPLL+ D+P LI L G + I + TNG Sbjct: 75 GEPLLRKDLPKLIARLTKLEGLKDIGLTTNG 105 >gi|23014017|ref|ZP_00053858.1| COG2896: Molybdenum cofactor biosynthesis enzyme [Magnetospirillum magnetotacticum MS-1] Length = 324 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F + +++L L E G ++ R LTGGEPL+ Sbjct: 18 DRCDLRCVYCMAEDVTF----KPRAELLTLEELGRLCEAFVRKGVRKIR---LTGGEPLV 70 Query: 98 QVDV-PLIQ---ALNKRGF--EIAVETNGT 121 + ++ LI AL G E+ + TNGT Sbjct: 71 RRNIMSLIDRLGALVADGRLDEVTLTTNGT 100 >gi|261417420|ref|YP_003251103.1| Radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373876|gb|ACX76621.1| Radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327495|gb|ADL26696.1| radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 390 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 38/112 (33%), Gaps = 27/112 (24%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R A + + G +DQLAD + + Sbjct: 47 CNLKCVHCYARSEAI------KYQNELSHEEGIKLIDQLAD----------FHVPVILFS 90 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 GGEPLL+ D L +G + TNGT C++P LK Sbjct: 91 GGEPLLRPDFFELANYAASKGIRPTISTNGT----------CITPDVAQKLK 132 >gi|18312504|ref|NP_559171.1| hypothetical protein PAE1252 [Pyrobaculum aerophilum str. IM2] gi|18159966|gb|AAL63353.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2] Length = 356 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 12/100 (12%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 LW + +CR+C F R + ++A I + GG Sbjct: 2 LWFLLTTGACNLKCRYCGGSFNPAHSPWRPRASAREVAGFISKI-----DASPVVFFYGG 56 Query: 94 EPLLQVD--VPLIQALNKRGFEIAVETNGTIE---PPQGI 128 EPL+ + +++AL F I TNGT+ PP+ Sbjct: 57 EPLVNPSYVLEVMEALGGAKFGIQ--TNGTLVKRLPPEAW 94 >gi|307354665|ref|YP_003895716.1| Radical SAM domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307157898|gb|ADN37278.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571] Length = 450 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 22/127 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C + T R +V++ I+ + + Sbjct: 95 CNL-----------SCPYCYQKELRTGDTSMDRTSVEKTIRFIKNTTLENKSSSLLVKFF 143 Query: 92 GGEPL------LQVDVPLIQALNKRGFEI--AVETNGTIEPPQGIDWICVSPKAG-CDLK 142 GGEPL +Q+ L + + + TNGT+ + D +SP C + Sbjct: 144 GGEPLTEPEICIQISKELREWAKAHNIKYIGTLTTNGTLLSGENFDR--LSPYISACHIT 201 Query: 143 IKGGQEL 149 + G +E+ Sbjct: 202 LDGPREI 208 >gi|297197550|ref|ZP_06914947.1| formate acetyltransferase [Streptomyces sviceus ATCC 29083] gi|297146770|gb|EFH28330.1| formate acetyltransferase [Streptomyces sviceus ATCC 29083] Length = 1138 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 30/137 (21%) Query: 26 FCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 F SGC L +C +C DT + G +VD++ IE+ Sbjct: 921 FV--SGCPL-----------RCLYCANPDTWHMR----DGKETSVDEVMREIEKYRAFVT 963 Query: 83 KEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWICVS 134 G +TGGEPLLQ +++ G A++T+G + E G D + + Sbjct: 964 TAGGGVTVTGGEPLLQPAFTGEILRRCKDTGLHTALDTSGFLGARASDELLSGTDLVLLD 1023 Query: 135 PKAGCDLKIKG--GQEL 149 K+ + G EL Sbjct: 1024 IKSFDSAAYRRLTGGEL 1040 >gi|51892757|ref|YP_075448.1| heme biosynthesis protein [Symbiobacterium thermophilum IAM 14863] gi|51856446|dbj|BAD40604.1| heme biosynthesis protein [Symbiobacterium thermophilum IAM 14863] Length = 355 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR C T V G + DQ+ +IE+ V T Sbjct: 24 CNLT-----------CRHCRT--VTCPAPTGKDLSTDQVVRVIEDIASVARPTF---VFT 67 Query: 92 GGEPLLQVDVPLIQALNK--RGFEIAVETNGTI 122 GGEPL + D+ A + G + +ETN T+ Sbjct: 68 GGEPLKRPDL-FTIAAHASRHGAVVVLETNATM 99 >gi|331268523|ref|YP_004395015.1| glycerol dehydratase activator [Clostridium botulinum BKT015925] gi|329125073|gb|AEB75018.1| glycerol dehydratase activator [Clostridium botulinum BKT015925] Length = 313 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 G V ++ + +++ I K G L+GGE LLQ + + L++ G+ A+ET Sbjct: 115 GKSVTVGEVVEKLKKDSIYYRKSGGGVTLSGGEALLQPEFAIELLKQCKSLGWHTAIET 173 >gi|328555376|gb|AEB25868.1| molybdenum cofactor biosynthesis protein A [Bacillus amyloliquefaciens TA208] gi|328913747|gb|AEB65343.1| molybdenum cofactor biosynthesis protein A [Bacillus amyloliquefaciens LL3] Length = 341 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 24/112 (21%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D F+ K + ++L L + G LTG Sbjct: 25 DRCNFRCTYCMPAELFGPDYPFLQ----KTELLSFEELERLAK--LFVGRFGVEKIRLTG 78 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPP-------QGIDWICVS 134 GEPL++ D+P LI+ L + G + IA+ TNG++ P G+ + VS Sbjct: 79 GEPLMRKDMPELIRKLARIPGLKDIAMTTNGSLLPVYAEKLKQAGLHRVTVS 130 >gi|308175399|ref|YP_003922104.1| molybdenum cofactor biosynthesis protein A [Bacillus amyloliquefaciens DSM 7] gi|307608263|emb|CBI44634.1| molybdenum cofactor biosynthesis protein A [Bacillus amyloliquefaciens DSM 7] Length = 344 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 24/112 (21%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D F+ K + ++L L + G LTG Sbjct: 25 DRCNFRCTYCMPAELFGPDYPFLQ----KTELLSFEELERLAK--LFVGRFGVEKIRLTG 78 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPP-------QGIDWICVS 134 GEPL++ D+P LI+ L + G + IA+ TNG++ P G+ + VS Sbjct: 79 GEPLMRKDMPELIRKLARIPGLKDIAMTTNGSLLPVYAEKLKQAGLHRVTVS 130 >gi|253990313|ref|YP_003041669.1| pyruvate formate lyase-activating enzyme 1 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781763|emb|CAQ84926.1| pyruvate formate lyase activating enzyme 1 [Photorhabdus asymbiotica] Length = 246 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 57/181 (31%), Gaps = 38/181 (20%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G V++L Sbjct: 25 VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKDVTVEELIKEATTYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKA 137 G +GGE +LQ + +A G ++TNG ID + V+ Sbjct: 68 NASGGGVTASGGEAILQAEFVRDWFRACRAEGIHTCLDTNGFVRRYDPVIDELMDVTDLV 127 Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197 DLK E+ Q V N+ +F R+ + N I Y P Sbjct: 128 MLDLKQIN-DEI----HQKLVGVSNHRTLEFARY--------LTKRNQKTWIRYVVV-PG 173 Query: 198 W 198 W Sbjct: 174 W 174 >gi|188997227|ref|YP_001931478.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932294|gb|ACD66924.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 208 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 23/100 (23%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 +GCN +C C V + G ++++ + IE+ Sbjct: 26 LAGCNF-----------RCLHCYNWRVVLD--IAGNIPIERVLEEIEKSPFLEC-----I 67 Query: 89 VLTGGEPLLQVDVPLIQALN-----KRGFEIAVETNGTIE 123 V++GGEP + LI+ +N +I ++TNG+ Sbjct: 68 VISGGEPTIHEPEELIELVNTIKKVNPELKIRIDTNGSNP 107 >gi|319775951|ref|YP_004138439.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae F3047] gi|329123815|ref|ZP_08252373.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus aegyptius ATCC 11116] gi|317450542|emb|CBY86759.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae F3047] gi|327469302|gb|EGF14773.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus aegyptius ATCC 11116] Length = 246 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G +V++L + Sbjct: 21 IRFILFMQGC-----------LMRCKYCHNRDT----WDLEGGREISVEELMKEVVSYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A G ++TNG Sbjct: 66 FMNATGGGVTASGGEAVLQAEFVRDWFRACKVEGINTCLDTNG 108 >gi|319762847|ref|YP_004126784.1| radical sam domain protein [Alicycliphilus denitrificans BC] gi|330824926|ref|YP_004388229.1| Radical SAM domain-containing protein [Alicycliphilus denitrificans K601] gi|317117408|gb|ADU99896.1| Radical SAM domain protein [Alicycliphilus denitrificans BC] gi|329310298|gb|AEB84713.1| Radical SAM domain protein [Alicycliphilus denitrificans K601] Length = 406 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 16/112 (14%) Query: 33 NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 + R + C+ C + G ++ ++ ++++ G +L+ Sbjct: 31 PVVIWNLIRRCNLTCKHC---YALSADHDYAGELSLSEVFTVMDDLKAFGVPA---LILS 84 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGT-IEPP-------QGIDWICVS 134 GGEPLL+ D+ + + GF + TNGT I+ P G D++ +S Sbjct: 85 GGEPLLRADIFEISARARQMGFYTGLSTNGTLIDAPMARRIADAGFDYVGIS 136 >gi|288927620|ref|ZP_06421467.1| pyruvate formate-lyase 1-activating enzyme [Prevotella sp. oral taxon 317 str. F0108] gi|288330454|gb|EFC69038.1| pyruvate formate-lyase 1-activating enzyme [Prevotella sp. oral taxon 317 str. F0108] Length = 247 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 26/116 (22%) Query: 8 EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66 E F ++ G G +F SGC +CR+C + Sbjct: 11 ESFGSVDGPGIRFI----IF--LSGC-----------KMRCRYC----HNPDTWAMKSAD 49 Query: 67 VDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 + +L+++ G+ ++GGE LLQ+D + L + G ++T Sbjct: 50 MRSADELLQQALRFRPYWGKEGGITVSGGEALLQIDFMLELFEKAKALGINTCLDT 105 >gi|283456246|ref|YP_003360810.1| pyruvate formate-lyase activating enzyme [Bifidobacterium dentium Bd1] gi|309801459|ref|ZP_07695586.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium dentium JCVIHMP022] gi|283102880|gb|ADB09986.1| pflA1 Pyruvate formate-lyase activating enzyme [Bifidobacterium dentium Bd1] gi|308221974|gb|EFO78259.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium dentium JCVIHMP022] Length = 293 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 40/140 (28%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G ++ + I+ Sbjct: 71 RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLEAMIKKIDRYA 113 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG------TIEPPQGI 128 + G +GGE ++Q + + + G ++T+G T E I Sbjct: 114 DLFKATGGGITFSGGESMMQP--AFVSRVFRASKEMGVHTCLDTSGFLNRNYTDEMIDDI 171 Query: 129 DWICVSPKAGCDLKIKGGQE 148 D +C+ L +K G E Sbjct: 172 D-LCL-------LDVKSGDE 183 >gi|268323119|emb|CBH36707.1| conserved hypothetical protein, radical SAM superfamily [uncultured archaeon] gi|268326059|emb|CBH39647.1| conserved hypothetical protein, radical SAM superfamily [uncultured archaeon] Length = 364 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 11/90 (12%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 +W+ + R + +C+ C I ++ LIE+ G + + TGG Sbjct: 39 VWAVTK--RCNLRCKHC-----SISEEDHEELTTEEGFTLIEDAAKLGHVKFAF---TGG 88 Query: 94 EPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 EP+L+ D+ LI+ + ++ + TNGT+ Sbjct: 89 EPMLRDDIYDLIEYASSFDMQVVMATNGTL 118 >gi|288930557|ref|YP_003434617.1| radical SAM protein [Ferroglobus placidus DSM 10642] gi|288892805|gb|ADC64342.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642] Length = 224 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 14/87 (16%) Query: 35 WSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 E + +C +C + +VD++A + + G E Sbjct: 8 NCRVEAAYCNLRCPYC-----THLEMESHELSVDEIASKL--------NGCEAVYIGGAE 54 Query: 95 PLLQVDV-PLIQALNKRGFEIAVETNG 120 P + D+ L++ L ++G ++ ++T+G Sbjct: 55 PTIHRDLKDLVEKLAEKGVKVTLKTSG 81 >gi|167043225|gb|ABZ07933.1| hypothetical protein ALOHA_HF4000ANIW141K23ctg1g43 [uncultured marine microorganism HF4000_ANIW141K23] Length = 419 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 10/96 (10%) Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNGTIE 123 DQ+ +++ G +TGGEP+L+ D+ LI+ + + I + TNG Sbjct: 7 TQDQVRAMMKTLRAERPIPGNSMQITGGEPMLREDITDLIKIMKEEHVDHIQMNTNGIRH 66 Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159 + P+AG D+++ G L L F V Sbjct: 67 A--------LDPEAGRDVRMAGCNNLYLSFDGVTAR 94 >gi|52550188|gb|AAU84037.1| heme d1 biosynthesis protein [uncultured archaeon GZfos35D7] Length = 348 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 18/95 (18%) Query: 29 FSG-CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 +G CNL CR + + + LI+E + Sbjct: 13 LTGACNLKC--------KHCRG-----SSTETPDPDELSTAEAFRLIDE---IVDFASPI 56 Query: 88 CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 +L+GGEPL++ DV + + +G + + TNGT Sbjct: 57 LILSGGEPLMRGDVYEIARYGVDKGLRVVLATNGT 91 >gi|320108450|ref|YP_004184040.1| molybdenum cofactor biosynthesis protein A [Terriglobus saanensis SP1PR4] gi|319926971|gb|ADV84046.1| molybdenum cofactor biosynthesis protein A [Terriglobus saanensis SP1PR4] Length = 351 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 21/109 (19%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99 DR + +C +C G ++ +IE G ++ R LTGGEPLL+ Sbjct: 40 DRCNYRCVYC---REGEDNVHFDELSIQDYLRMIEVFVSLGIEKIR---LTGGEPLLRAG 93 Query: 100 DVPLIQALN-------KRGFEIAVETNGTIEPPQGIDW-------ICVS 134 V +++ L +IA+ TNG + +D I VS Sbjct: 94 LVKMVRELAAMRPVFTDEPLDIALTTNGHLLAGMAVDLKAAGLSRITVS 142 >gi|224417944|ref|ZP_03655950.1| radical SAM family protein [Helicobacter canadensis MIT 98-5491] gi|253827282|ref|ZP_04870167.1| putative oxidoreductase [Helicobacter canadensis MIT 98-5491] gi|313141485|ref|ZP_07803678.1| pyruvate formate-lyase activating enzyme [Helicobacter canadensis MIT 98-5491] gi|253510688|gb|EES89347.1| putative oxidoreductase [Helicobacter canadensis MIT 98-5491] gi|313130516|gb|EFR48133.1| pyruvate formate-lyase activating enzyme [Helicobacter canadensis MIT 98-5491] Length = 364 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDVPL- 103 +C FC D++G + + + + ++ E G K + G GEP+L D+ L Sbjct: 51 RCTFCGVDYMGYKNI---KIDFEIYKQIVREMGDLGVKS---VMFAGEGEPMLHRDLDLM 104 Query: 104 IQALNKRGFEIAVETN 119 I+A K G ++A+ TN Sbjct: 105 IEATKKAGIDVAITTN 120 >gi|205372586|ref|ZP_03225397.1| hypothetical protein Bcoam_03785 [Bacillus coahuilensis m4-4] Length = 375 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99 +C C + ++ L ++E ++ R +TGGEP+L Q Sbjct: 45 RCEHCAVGYTLTPKDPNA-LPIELLLSRLDEI-----QDLRSLSITGGEPMLSKKSVEQY 98 Query: 100 DVPLIQALNKRGFEIAVETNGTIEP 124 +PL+Q + RG + +N T++P Sbjct: 99 VLPLLQYSHSRGVRTQINSNLTLDP 123 >gi|194290177|ref|YP_002006084.1| molybdenum cofactor biosynthesis protein a [Cupriavidus taiwanensis LMG 19424] gi|193224012|emb|CAQ70021.1| MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A [Cupriavidus taiwanensis LMG 19424] Length = 389 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 18/85 (21%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + + +++ G ++ R LTGGE Sbjct: 66 DRCNFRCVYCMPKEVFDKDYTFLPHS--ELLSFEEIERTARLFVAHGVEKIR---LTGGE 120 Query: 95 PLLQVDVP-LIQALNKRGFEIAVET 118 PLL+ ++ L++ L K +ET Sbjct: 121 PLLRKNIEHLVEMLAK------IET 139 >gi|147677309|ref|YP_001211524.1| Fe-S oxidoreductases [Pelotomaculum thermopropionicum SI] gi|146273406|dbj|BAF59155.1| predicted Fe-S oxidoreductases [Pelotomaculum thermopropionicum SI] Length = 392 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C C + + K G + I+ E + + Sbjct: 47 CNL-----------RCIHC---YSSSESRKYDGELTTAEARRFID---GLAEFKVPVLLF 89 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 +GGEPLL+ D+ L +RG + TNGT+ Sbjct: 90 SGGEPLLRDDLFELAAYAGERGIRPTISTNGTL 122 >gi|113868543|ref|YP_727032.1| molybdenum cofactor biosynthesis protein A [Ralstonia eutropha H16] gi|113527319|emb|CAJ93664.1| molybdopterin biosynthesis protein [Ralstonia eutropha H16] Length = 374 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 18/85 (21%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + + +++ G ++ R LTGGE Sbjct: 51 DRCNFRCVYCMPKEVFDKDYTFLPHS--ELLSFEEIERTARLFVAHGVEKIR---LTGGE 105 Query: 95 PLLQVDVP-LIQALNKRGFEIAVET 118 PLL+ ++ L++ L K +ET Sbjct: 106 PLLRKNIEHLVEMLAK------IET 124 >gi|41614809|ref|NP_963307.1| hypothetical protein NEQ013 [Nanoarchaeum equitans Kin4-M] gi|40068533|gb|AAR38868.1| NEQ013 [Nanoarchaeum equitans Kin4-M] Length = 346 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 7/78 (8%) Query: 45 AQCRFCDTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-V 101 ++C FC+ + + + ++ D + + K + LTGGEPLL+ + Sbjct: 41 SRCTFCNIWKIYKENPNLLKKELSKEEWIDFLSK----NNKYLAWVSLTGGEPLLKDGAI 96 Query: 102 PLIQALNKRGFEIAVETN 119 +I L G + + TN Sbjct: 97 DIINYLLNNGKNVEITTN 114 >gi|20094781|ref|NP_614628.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19] gi|19887984|gb|AAM02558.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19] Length = 285 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 13/114 (11%) Query: 51 DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110 D ++GT+ + ++ + I + + + + +LTGGEP L + L +R Sbjct: 16 DCPHCNLRGTRRAGHLDPEVLERILAE-VADRYDLDFVILTGGEPCLHPRFGELVELCRR 74 Query: 111 -----GFEIAVETNGTIEPPQGID--WICVSP--KAGCDLKIKGGQELKLVFPQ 155 G +A E +D ++ + P G + ++ +E+ + P Sbjct: 75 YDAGVGVNVATE---VHPALADVDHVYVALEPHRGYGLEGALRTWEEVARLEPD 125 >gi|320094912|ref|ZP_08026644.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Actinomyces sp. oral taxon 178 str. F0338] gi|319978156|gb|EFW09767.1| anaerobic ribonucleoside-triphosphate reductase small subunit [Actinomyces sp. oral taxon 178 str. F0338] Length = 234 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 26/125 (20%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 ++F GC C +C R D +E Sbjct: 22 VASLF--LQGCP-----------WACPYC-----QNAAIIDPRVPGVVAWDAVERLLARR 63 Query: 82 EKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICV 133 V +GGE Q P ++ + + GF + + T G G +DW+ + Sbjct: 64 RGLLDGVVFSGGEATRQIALAPAMRRVRELGFAVGLHTAGPYPARLGALLDEGLVDWVGL 123 Query: 134 SPKAG 138 KA Sbjct: 124 DIKAT 128 >gi|220903568|ref|YP_002478880.1| Radical SAM domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867867|gb|ACL48202.1| Radical SAM domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 414 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 13/108 (12%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 G A C L + + C+ C G + + LI+ Sbjct: 54 GSPA-------CRLIAWEVTRSCNLACKHC--RAEAHPEPYPGELSTAEAKALIDTFTEV 104 Query: 81 GEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127 G+ + TGG+P+++ DV L+ + +G A NGT+ P+ Sbjct: 105 GK---PIIIFTGGDPMIRPDVYELVAYAHSKGLPCAFSPNGTLITPET 149 >gi|150400184|ref|YP_001323951.1| molybdenum cofactor biosynthesis protein A [Methanococcus vannielii SB] gi|189028689|sp|A6US67|MOAA_METVS RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|150012887|gb|ABR55339.1| putative molybdenum cofactor biosynthesis protein A [Methanococcus vannielii SB] Length = 297 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 37/177 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C G G + D++ ++ E R ++ Sbjct: 20 CNL-----------KCFYC--HREGRTEENGKLMSPDEIGKIVSASL---EFGVRKIKIS 63 Query: 92 GGEPLLQVDVP-LIQALN-KRGFEIAVETNGTIEPPQGIDW-------ICVS-----PKA 137 GGEPL++ D+P +IQ + + +I++ TNG + D + VS PK Sbjct: 64 GGEPLVRKDLPKIIQNIKNDQIKDISLTTNGILLEKCAEDLKKAGLNRVNVSLDTLNPKK 123 Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 + I GG K+ + + ++G + + MD + + + YC + Sbjct: 124 YKE--ITGGDVEKV---KRGIEKAIFLGLTPLKVNFLAMDITLND--LSEVMDYCKK 173 >gi|114571255|ref|YP_757935.1| GTP cyclohydrolase subunit MoaA [Maricaulis maris MCS10] gi|114341717|gb|ABI66997.1| GTP cyclohydrolase subunit MoaA [Maricaulis maris MCS10] Length = 339 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 10/90 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C K ++++L + + G + R LTGGEPL++ D Sbjct: 30 DRCDLRCVYC-MKAKPTFLPKKDLLSLEELTAVCDTFIARGVTKVR---LTGGEPLVRKD 85 Query: 101 -VPLIQALNKR----GF-EIAVETNGTIEP 124 + LI+ L R G E+ + TNGT P Sbjct: 86 ILSLIENLGARIGKSGLEEVCLTTNGTQLP 115 >gi|57641606|ref|YP_184084.1| tRNA-modifying enzyme [Thermococcus kodakarensis KOD1] gi|57159930|dbj|BAD85860.1| hypothetical protein, conserved, radical SAM superfamily [Thermococcus kodakarensis KOD1] Length = 333 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 GEP+L + L++ +KRGF + TNGT+ Sbjct: 142 GEPMLYPYMGDLVEEFHKRGFTTFIVTNGTLP 173 >gi|332178902|gb|AEE14591.1| molybdenum cofactor biosynthesis protein A [Thermodesulfobium narugense DSM 14796] Length = 324 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 7/85 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C G+ + +++ +I+ G K+ R LTGGEPL++ Sbjct: 18 DRCNYRCVYC-MPEEGVNFIPHKEILSFEEIVRIIKILKELGIKKIR---LTGGEPLVRK 73 Query: 100 DV-PLIQALNKRGF-EIAVETNGTI 122 ++ L+ + K G ++++ TNG++ Sbjct: 74 NIVELVGKITKIGLDDVSLTTNGSL 98 >gi|324327466|gb|ADY22726.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar finitimus YBT-020] Length = 338 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +CR+C D + + + + D++ + G ++ R +TG Sbjct: 22 DRCNFRCRYCMPEEIFGPD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEPLL+ +P I+ LNK G E I + TNG++ D + VS Sbjct: 75 GEPLLRRGLPQFIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126 >gi|302343941|ref|YP_003808470.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075] gi|301640554|gb|ADK85876.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075] Length = 337 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 18/91 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + T G + D +A L ++ + + Sbjct: 16 CNL-----------RCVYC---YAAASAT-GADMDPD-IAALALDRLGPPPGRRQTVEFS 59 Query: 92 GGEPLL--QVDVPLIQALNKRGFEIAVETNG 120 GGEPLL ++ L+ A++TNG Sbjct: 60 GGEPLLRFELLKELVLTRASAQRRFALQTNG 90 >gi|291532427|emb|CBL05540.1| Radical SAM superfamily [Megamonas hypermegale ART12/1] Length = 130 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Query: 49 FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL 107 FCD + N + L+E+ G + + +GGEPL++ D+ L++ Sbjct: 14 FCDHCYRDAGCKADEELNTQEAKTLLEQIAKAG---FKIMIFSGGEPLMRPDIVELVEYA 70 Query: 108 NKRGFEIAVETNGTI 122 K G TNGT+ Sbjct: 71 TKLGLRSVFGTNGTL 85 >gi|282866080|ref|ZP_06275128.1| hopanoid biosynthesis associated radical SAM protein HpnH [Streptomyces sp. ACTE] gi|282559119|gb|EFB64673.1| hopanoid biosynthesis associated radical SAM protein HpnH [Streptomyces sp. ACTE] Length = 339 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 38 CNLAC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + +++ L + + + TN + + ++ SP + I G +E Sbjct: 80 GGEPLMHPQIDEIVRQLVAKKKYVFLCTN-AMLMRKKLEKFTPSPYFAFAVHIDGLRE 136 >gi|157364004|ref|YP_001470771.1| glycyl-radical activating family protein [Thermotoga lettingae TMO] gi|157314608|gb|ABV33707.1| glycyl-radical enzyme activating protein family [Thermotoga lettingae TMO] Length = 298 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 6/94 (6%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119 G + + + + +E+ ++ G +GGEPL Q+D L + L +R +A++T+ Sbjct: 102 GTQISCEDILKELEKDTTYFDQSGGGVTFSGGEPLSQIDFLLEILPELKRRAVHVAIDTS 161 Query: 120 GTIEPPQGIDWICVSPKAGCDL-KIKGGQELKLV 152 G + D V P L +K E K + Sbjct: 162 G---YAKTEDLKKVLPYVDLFLYDLKVIDEKKHI 192 >gi|311067283|ref|YP_003972206.1| putative Fe-S oxidoreductase, radical SAM superfamily protein [Bacillus atrophaeus 1942] gi|310867800|gb|ADP31275.1| putative Fe-S oxidoreductase, radical SAM superfamily protein [Bacillus atrophaeus 1942] Length = 372 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 13/92 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L +EE + R +TGGEP+L + Sbjct: 44 RCEHCAVGYT-LQPKDPNALPIDLLLQRLEEIPLL-----RSISITGGEPMLSLKSVKEY 97 Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 VPL++ ++RG + +N T++ + +WI Sbjct: 98 VVPLLKYAHERGVRTQINSNLTLDI-ERYEWI 128 >gi|289550128|ref|YP_003471032.1| Molybdenum cofactor biosynthesis protein A [Staphylococcus lugdunensis HKU09-01] gi|315659242|ref|ZP_07912106.1| molybdenum cofactor biosynthesis protein A [Staphylococcus lugdunensis M23590] gi|289179660|gb|ADC86905.1| Molybdenum cofactor biosynthesis protein A [Staphylococcus lugdunensis HKU09-01] gi|315495667|gb|EFU83998.1| molybdenum cofactor biosynthesis protein A [Staphylococcus lugdunensis M23590] Length = 340 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 16/89 (17%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D DFV + K +++ + E G K+ R +TGG Sbjct: 22 DRCNFRCDYCMPKEIFGD-DFVFL--PKDELLTFEEIERIAEIYAELGVKKLR---ITGG 75 Query: 94 EPLLQVDV-PLIQALNK-RGFE-IAVETN 119 EPLL+ ++ LI LNK G E I + TN Sbjct: 76 EPLLRRNLYQLIARLNKIEGIEDIGLTTN 104 >gi|285017403|ref|YP_003375114.1| molybdenum cofactor biosynthesis protein a [Xanthomonas albilineans GPE PC73] gi|283472621|emb|CBA15126.1| probable molybdenum cofactor biosynthesis protein a [Xanthomonas albilineans] Length = 344 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 20/137 (14%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 +C +C D GR + Q+ L G ++ R LTGGEPLL+ ++P Sbjct: 36 RCGYCMPADKVPDDYGFDAAGRLSFAQIETLARAFVRNGVRKLR---LTGGEPLLRRELP 92 Query: 103 -LIQALNK-RGFE-IAVETNGTIEPP-------QGIDWICVSPKAGCDLKIK----GGQE 148 L++ L + G E +A+ TNG + G+ + VS A L + G E Sbjct: 93 ELVRRLARIAGVEDLAMTTNGVLLATHAQALRDAGLQRVTVSLDAIDPLLFRQLSGGRGE 152 Query: 149 LKLVFPQVNVSPENYIG 165 + V ++ + +G Sbjct: 153 IAQVLAGIDAAVAAGLG 169 >gi|271968669|ref|YP_003342865.1| Fe-S oxidoreductase-like protein [Streptosporangium roseum DSM 43021] gi|270511844|gb|ACZ90122.1| Fe-S oxidoreductase-like protein [Streptosporangium roseum DSM 43021] Length = 360 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 7/90 (7%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-P 102 +C C + + + Q+ + + GGEPLL V Sbjct: 19 PLRCSHC---YSESGRRPARQLDHGQMLRAADAVIAMKPYG---VCIAGGEPLLVKGVFE 72 Query: 103 LIQALNKRGFEIAVETNGTIEPPQGIDWIC 132 +I L+ G E+++ T G P+ ID I Sbjct: 73 VIDRLSAAGMEVSLFTGGWSLRPEMIDDIV 102 >gi|224824372|ref|ZP_03697480.1| molybdenum cofactor biosynthesis protein A [Lutiella nitroferrum 2002] gi|224603791|gb|EEG09966.1| molybdenum cofactor biosynthesis protein A [Lutiella nitroferrum 2002] Length = 324 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 5/63 (7%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR +C +C + + D++ ++ G + R LTGGEPLL+ Sbjct: 19 DRCDLRCTYC-IPKGFKDFEEPENWLTFDEIERVVAAFVRLGTRRVR---LTGGEPLLRR 74 Query: 100 DVP 102 ++P Sbjct: 75 NLP 77 >gi|317471208|ref|ZP_07930576.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA] gi|316901314|gb|EFV23260.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA] Length = 362 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 15/102 (14%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R S C +G G + Q D+ ++ G + +L Sbjct: 69 CNLHCKGCYARASGACA---------EGQPEGELSGAQWNDIFDQAEKLG---ISFILLA 116 Query: 92 GGEPLLQVDVPLIQALNKRG-FEIAVETNGTIEPPQGIDWIC 132 GGEPL++ DV +K+ F + TNGT+ + Sbjct: 117 GGEPLMRRDVIESAGRHKKVIFPVF--TNGTLMQEGCLTLFS 156 >gi|294636757|ref|ZP_06715096.1| pyruvate formate-lyase 2-activating enzyme [Edwardsiella tarda ATCC 23685] gi|291090016|gb|EFE22577.1| pyruvate formate-lyase 2-activating enzyme [Edwardsiella tarda ATCC 23685] Length = 226 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119 G +D+L + + I G L+GGE L+Q ++ L + G AVET Sbjct: 29 GRDITLDELEREVLKDDIFFRVSGGGVTLSGGEVLMQAAFAGQFLRRLQRLGIHCAVETA 88 Query: 120 G 120 G Sbjct: 89 G 89 >gi|228922276|ref|ZP_04085583.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837331|gb|EEM82665.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 307 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 13/85 (15%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ +P LI+ L+K G E I + Sbjct: 14 SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPKLIERLHKIDGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVS 134 TNG++ D + VS Sbjct: 71 TTNGSLLKKFAPDLYKAGLSRVTVS 95 >gi|261339132|ref|ZP_05966990.1| hypothetical protein ENTCAN_05353 [Enterobacter cancerogenus ATCC 35316] gi|288318975|gb|EFC57913.1| putative pyruvate formate-lyase 3-activating enzyme [Enterobacter cancerogenus ATCC 35316] Length = 299 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118 G V ++ + ++ G L+GGEP + + L +A ++ G AVET Sbjct: 101 GDTQPVAEIMATVLRDKPFYDRSGGGITLSGGEPFMNPTLAHDLFKASHEHGIHTAVET 159 >gi|254464661|ref|ZP_05078072.1| putative Fe-S oxidoreductase, SAM radical superfamily [Rhodobacterales bacterium Y4I] gi|206685569|gb|EDZ46051.1| putative Fe-S oxidoreductase, SAM radical superfamily [Rhodobacterales bacterium Y4I] Length = 346 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 15/96 (15%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C F K G +I++ EK Y + Sbjct: 58 CNL-----------RCPVCPVTFAM--SRKRGMMKPHVFRKIIDDFKDQREKPAIYFSFS 104 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQ 126 G EP L D+P I ++ G + + TN T P+ Sbjct: 105 G-EPTLHKDLPDFIAYAHENGHDTYLSTNATRLTPE 139 >gi|189500335|ref|YP_001959805.1| Radical SAM domain-containing protein [Chlorobium phaeobacteroides BS1] gi|189495776|gb|ACE04324.1| Radical SAM domain protein [Chlorobium phaeobacteroides BS1] Length = 447 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 C +C + + V ++A+ +E + +G + GGEPLL ++ + Sbjct: 111 CPYC---YERPERFTMSPETVSRIAEYVEGELASGRYSSMHVTWYGGEPLLSGSFEVVVS 167 Query: 107 LNKR 110 L+++ Sbjct: 168 LSEK 171 >gi|88811400|ref|ZP_01126655.1| Radical SAM domain Fe-S oxidoreductase [Nitrococcus mobilis Nb-231] gi|88791289|gb|EAR22401.1| Radical SAM domain Fe-S oxidoreductase [Nitrococcus mobilis Nb-231] Length = 385 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 8/87 (9%) Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 R +V+Q ++E + GGEPL+ ++P +++ + R + + TN Sbjct: 57 KRLSVEQALGAVDE------CNAPVVSIPGGEPLIHKEMPRIVEGIIARKKFVYLCTN-A 109 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQE 148 I + +D SP + + G +E Sbjct: 110 ILLAKKLDDYRPSPYLTFSVHLDGNRE 136 >gi|329937109|ref|ZP_08286738.1| hypothetical protein SGM_2230 [Streptomyces griseoaurantiacus M045] gi|329303716|gb|EGG47601.1| hypothetical protein SGM_2230 [Streptomyces griseoaurantiacus M045] Length = 347 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 38 CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + +++ L + + + TN + + +D SP + I G +E Sbjct: 80 GGEPLMHPQIDEIVRQLVAKRKYVFLCTN-AMLLRKKMDKFKPSPYFAFTVHIDGLRE 136 >gi|301785101|ref|XP_002927965.1| PREDICTED: molybdenum cofactor biosynthesis protein 1-like [Ailuropoda melanoleuca] Length = 636 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + K +++ L G + R LT Sbjct: 80 CNL-----------RCQYCMPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 125 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GGEPL++ D V ++ L++ G I + TNG Sbjct: 126 GGEPLIRPDVVDIVARLHQLEGLRTIGITTNG 157 >gi|256810864|ref|YP_003128233.1| molybdenum cofactor biosynthesis protein A [Methanocaldococcus fervens AG86] gi|256794064|gb|ACV24733.1| molybdenum cofactor biosynthesis protein A [Methanocaldococcus fervens AG86] Length = 298 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 28/172 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C + GRY + LI + + + R ++ Sbjct: 20 CNL-----------NCFYC---HKEGHNSNNGRYMTAEEIGLIAKT--STKFGVRKVKIS 63 Query: 92 GGEPLLQVDV-PLIQALNKRGFE-IAVETNGTI-------EPPQGIDWICVS-PKAGCDL 141 GGEPLL+ D+ +I+ + + I++ TNG + G+D + VS +L Sbjct: 64 GGEPLLRKDICEIIENIKDEKIKDISLTTNGILLENLADKLKDAGLDRVNVSLDTLNPEL 123 Query: 142 --KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191 KI ++ V + + E + F ++ L E Sbjct: 124 YKKITKFGDVNKVVNGIKRAIEEELTPLKVNFLAMSINIKELPEIMEFCRDV 175 >gi|109157586|pdb|2FB2|A Chain A, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT gi|109157587|pdb|2FB2|B Chain B, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT Length = 340 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D DFV + K D++A + + G K+ R +TGG Sbjct: 22 DRCNFRCDYCMPKEVFGD-DFVFL--PKNELLTFDEMARIAKVYAELGVKKIR---ITGG 75 Query: 94 EPLLQVDVP-LIQALNKR-GFE-IAVETNG 120 EPL++ D+ LI LN+ G E I + TNG Sbjct: 76 EPLMRRDLDVLIAKLNQIDGIEDIGLTTNG 105 >gi|49484483|ref|YP_041707.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus MRSA252] gi|257423751|ref|ZP_05600180.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus 55/2053] gi|257426429|ref|ZP_05602831.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus 65-1322] gi|257429068|ref|ZP_05605455.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus 68-397] gi|257431715|ref|ZP_05608078.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus E1410] gi|257434675|ref|ZP_05610726.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus M876] gi|282902170|ref|ZP_06310063.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus C160] gi|282906610|ref|ZP_06314458.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus Btn1260] gi|282909580|ref|ZP_06317391.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911828|ref|ZP_06319624.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus WBG10049] gi|282915116|ref|ZP_06322893.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus M899] gi|282920843|ref|ZP_06328561.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus C427] gi|282925748|ref|ZP_06333396.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus C101] gi|283959046|ref|ZP_06376487.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus A017934/97] gi|293497520|ref|ZP_06665374.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus 58-424] gi|293511095|ref|ZP_06669792.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus M809] gi|293549701|ref|ZP_06672373.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus M1015] gi|295428850|ref|ZP_06821474.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus EMRSA16] gi|81650568|sp|Q6GEG6|MOAA_STAAR RecName: Full=Molybdenum cofactor biosynthesis protein A gi|49242612|emb|CAG41333.1| putative molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus MRSA252] gi|257272769|gb|EEV04871.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus 55/2053] gi|257276060|gb|EEV07511.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus 65-1322] gi|257279549|gb|EEV10136.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus 68-397] gi|257282594|gb|EEV12726.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus E1410] gi|257285271|gb|EEV15387.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus M876] gi|282312577|gb|EFB42981.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus C101] gi|282315258|gb|EFB45642.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus C427] gi|282320837|gb|EFB51171.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus M899] gi|282323524|gb|EFB53840.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus WBG10049] gi|282326559|gb|EFB56861.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329509|gb|EFB59030.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus Btn1260] gi|282596629|gb|EFC01588.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus C160] gi|283788638|gb|EFC27465.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus A017934/97] gi|290918748|gb|EFD95824.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus M1015] gi|291096451|gb|EFE26709.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus 58-424] gi|291466082|gb|EFF08611.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus M809] gi|295127199|gb|EFG56841.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus EMRSA16] gi|312437321|gb|ADQ76392.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus TCH60] gi|315193523|gb|EFU23919.1| putative molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus CGS00] Length = 340 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D DFV + K D++A + + G K+ R +TGG Sbjct: 22 DRCNFRCDYCMPKEVFGD-DFVFL--PKNELLTFDEMARIAKVYAELGVKKIR---ITGG 75 Query: 94 EPLLQVDVP-LIQALNKR-GFE-IAVETNG 120 EPL++ D+ LI LN+ G E I + TNG Sbjct: 76 EPLMRRDLDVLIAKLNQIDGIEDIGLTTNG 105 >gi|317153910|ref|YP_004121958.1| Radical SAM domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944161|gb|ADU63212.1| Radical SAM domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 389 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 6/97 (6%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 C L + + C+ C G + + LI+ G + T Sbjct: 44 CRLIAWEVTRSCNLACKHC--RAEAHPEPYEGELSTTEAKALIDTFPDVG---SPIIIFT 98 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEPPQG 127 GGEP++ LI +G + NGT+ P+ Sbjct: 99 GGEPMMRHDVYELIAYAKAKGLRCVMAPNGTLITPET 135 >gi|229542808|ref|ZP_04431868.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Bacillus coagulans 36D1] gi|229327228|gb|EEN92903.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Bacillus coagulans 36D1] Length = 158 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 29/104 (27%), Gaps = 25/104 (24%) Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI 74 GEG +F F+GC + + S G V+ + + Sbjct: 14 GEGLRT---VIF--FAGCPHFCKGCHNPRSWNIH------------NGTEMPVEDVVAEV 56 Query: 75 EEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAV 116 +GGEP Q + + L G I V Sbjct: 57 ------AGNPLTDVTFSGGEPFFQAQEVCEVAKRLKALGKNIWV 94 >gi|317494866|ref|ZP_07953277.1| radical SAM superfamily protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917191|gb|EFV38539.1| radical SAM superfamily protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 233 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119 G +++ L + + + G L+GGE L+Q L + L + G A+ET Sbjct: 36 GRDISLENLLKEVLKDDVFFRTSGGGVTLSGGEVLMQAPFALQFLTRLKELGINTAIETA 95 Query: 120 G 120 G Sbjct: 96 G 96 >gi|313889016|ref|ZP_07822675.1| putative pyruvate formate-lyase 1-activating enzyme [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845002|gb|EFR32404.1| putative pyruvate formate-lyase 1-activating enzyme [Peptoniphilus harei ACS-146-V-Sch2b] Length = 309 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 8/88 (9%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 KG NV+++ +++ + L+GGE L+Q + + +A RG+ A+ET Sbjct: 111 KGKVMNVEEVITELKKDDSFYYRSNGGITLSGGETLMQPEFAKEIFKACRSRGWHTAIET 170 Query: 119 NG------TIEPPQGIDWICVSPKAGCD 140 G + ID + + KA D Sbjct: 171 EGYASEEVIRDVVPHIDLVLLDIKANND 198 >gi|296444443|ref|ZP_06886408.1| hopanoid biosynthesis associated radical SAM protein HpnH [Methylosinus trichosporium OB3b] gi|296258090|gb|EFH05152.1| hopanoid biosynthesis associated radical SAM protein HpnH [Methylosinus trichosporium OB3b] Length = 383 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 24/143 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + +D+ + E V+ Sbjct: 38 CNL-----------ACAGC-------GKIDYPDHILDKRLSAADSLASVDECGAPVVVIA 79 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 GGEPLL ++P ++Q + R V TN + + ID SP + + G +E+ Sbjct: 80 GGEPLLHKELPQIVQGIMARKKFAIVCTN-ALLLAKKIDQYEPSPYFTWSIHLDGDEEM- 137 Query: 151 LVFPQVNVSPENYIGFDFERFSL 173 VS + E +L Sbjct: 138 ---HDRAVSQKGVYKRAVEAIAL 157 >gi|260596662|ref|YP_003209233.1| pyrroloquinoline quinone biosynthesis protein PqqE [Cronobacter turicensis z3032] gi|260215839|emb|CBA28321.1| Coenzyme PQQ synthesis protein E [Cronobacter turicensis z3032] Length = 378 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF + Q D+ + G + + Sbjct: 10 PLWLLAELTYRCPLQCPYCSNPLDFAAQE----NELTTAQWIDVFRQARAMGAVQLGF-- 63 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL++ D+P LI A GF + T+G Sbjct: 64 -SGGEPLVRKDLPELIAAARGMGFYTNLITSG 94 >gi|212224671|ref|YP_002307907.1| hypothetical protein TON_1520 [Thermococcus onnurineus NA1] gi|212009628|gb|ACJ17010.1| hypothetical protein, conserved [Thermococcus onnurineus NA1] Length = 590 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 4/89 (4%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L + +R + C +C F +G ++Q+ ++ LTGG Sbjct: 139 LLNIVLTNRCNLSCWYC--FFYAKEGQPIYEPTLEQIRMMLRNAKKEHPIGANAVQLTGG 196 Query: 94 EPLLQVDV-PLIQALNKRGF-EIAVETNG 120 EP L+ D+ +I+ + G+ + + T+G Sbjct: 197 EPTLRNDLIEIIRIAKEEGYDHVQLNTDG 225 >gi|331646167|ref|ZP_08347270.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M605] gi|331044919|gb|EGI17046.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M605] Length = 255 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 36 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKELVTYRHFMNASG 80 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 81 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 117 >gi|312961514|ref|ZP_07776015.1| anaerobic ribonucleoside-triphosphate reductase-activating protein [Pseudomonas fluorescens WH6] gi|311284193|gb|EFQ62773.1| anaerobic ribonucleoside-triphosphate reductase-activating protein [Pseudomonas fluorescens WH6] Length = 231 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 11/113 (9%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L + +CR+C GR VD + + V +GG Sbjct: 22 LACVLFCQGCAWRCRYC---HNPDLIPPRGRSEVD--WRRVLLFLQRRQDLLDAVVFSGG 76 Query: 94 EPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCD 140 EP LQ +P + + GF I + + G + DW+ KA + Sbjct: 77 EPTLQEGLPGAMDEVRAMGFRIGLHSAGIKPAGFANALRHADWVGFDVKALAE 129 >gi|254303484|ref|ZP_04970842.1| possible iron-sulfur (Fe-S) dehydrogenase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323676|gb|EDK88926.1| possible iron-sulfur (Fe-S) dehydrogenase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 253 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 14/103 (13%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105 C FCD F +D + ++ E I ++ TGGEP L D+ ++ Sbjct: 36 CIFCD--FWQRNDIVFKEITLDNFSKVV-EFLIKESNAFKF---TGGEPCLNPDLKEMMN 89 Query: 106 ALNKRGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDL 141 + G + ++TNG+ + + ID I +S K + Sbjct: 90 IIKTHGGIVFLDTNGSMFTKVKELVDEKLIDVIGISLKGNTPI 132 >gi|99034360|ref|ZP_01314386.1| hypothetical protein Wendoof_01000814 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 323 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 46/128 (35%), Gaps = 19/128 (14%) Query: 46 QCRFCD--TDFVGIQGTKGGR------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 C C+ + + ++ K + +++ + +I+E G T GEPL+ Sbjct: 1 ACVMCECFSPYSKVKEEKKAKGIKPKIMSIETIRKVIKEAD--GTPLREIIPSTMGEPLM 58 Query: 98 QVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156 +I ++ G ++ + TNG+ W +L + ++K+ + Sbjct: 59 YKSFDEIINLCHEFGLKLNLTTNGSFPIKGARKW--------AELLVPILSDVKISWNGA 110 Query: 157 NVSPENYI 164 I Sbjct: 111 TKETHERI 118 >gi|15922400|ref|NP_378069.1| hypothetical protein ST2079 [Sulfolobus tokodaii str. 7] gi|15623189|dbj|BAB67178.1| 351aa long conserved hypothetical protein [Sulfolobus tokodaii str. 7] Length = 351 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 59/181 (32%), Gaps = 31/181 (17%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWITGEKE 84 CR G C +C + +V L D I E + Sbjct: 37 CRLGG--KLVVYITGECGDSCYYCPVSYERFGKDVMFANETHVSSLLDYIYEAYRMNALG 94 Query: 85 GRYCVLTGGEPLLQVD--VPLIQALNK---RGFEIAVETNG---TIEPPQGIDWICVSPK 136 +TGG+P+L +D V LI+ L F I + T+G T + + +D + Sbjct: 95 AG---ITGGDPILAIDRVVSLIRLLKDEFGEEFHIHLYTSGRYVTNDVLRELDKV----- 146 Query: 137 AGCDLKIKGGQELKL--VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 G E++ V + + E + + F+ P E L I + + Sbjct: 147 --------GLDEIRFHPVKEEYLKAVEKALKYSFDVGLEIPAIPGEEEYAEKL-IKWAIE 197 Query: 195 N 195 Sbjct: 198 K 198 >gi|297244007|ref|ZP_06927897.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A8796] gi|297178785|gb|EFH38030.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A8796] Length = 340 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D DFV + K D++A + + G K+ R +TGG Sbjct: 22 DRCNFRCDYCMPKEVFGD-DFVFL--PKNELLTFDEMARIAKVYAELGVKKIR---ITGG 75 Query: 94 EPLLQVDVP-LIQALNKR-GFE-IAVETNG 120 EPL++ D+ LI LN+ G E I + TNG Sbjct: 76 EPLMRRDLDVLIAKLNQIDGIEDIGLTTNG 105 >gi|254518626|ref|ZP_05130682.1| molybdenum cofactor biosynthesis protein A [Clostridium sp. 7_2_43FAA] gi|226912375|gb|EEH97576.1| molybdenum cofactor biosynthesis protein A [Clostridium sp. 7_2_43FAA] Length = 323 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 21/122 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + K + D++ ++ E G K+ R+ T Sbjct: 20 CNL-----------RCIYCMEEKNNTFLKKEDKLTNDEIYKIVCESAKLGIKKVRF---T 65 Query: 92 GGEPLLQVDV-PLIQALNK-RGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL++ D+ L+Q +N +G EI + TNG I + ++ + KAG Sbjct: 66 GGEPLVRKDIVELMQRINTIQGIEEIYLTTNG-ILLEENVEILA---KAGLKGVNISLDS 121 Query: 149 LK 150 LK Sbjct: 122 LK 123 >gi|229543504|ref|ZP_04432564.1| molybdenum cofactor biosynthesis protein A [Bacillus coagulans 36D1] gi|229327924|gb|EEN93599.1| molybdenum cofactor biosynthesis protein A [Bacillus coagulans 36D1] Length = 333 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C G + R + ++ + R LTGGEPLL+ D Sbjct: 19 DRCNFRCTYCMPADNGQKYCFMNRSELMTFEEITRLARLFVSLGVRKIRLTGGEPLLRKD 78 Query: 101 VP-LIQALNKR-GFE-IAVETNG 120 + L+ L++ G E ++V TNG Sbjct: 79 IDQLVAMLHQIDGLEDLSVTTNG 101 >gi|85859300|ref|YP_461502.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB] gi|85722391|gb|ABC77334.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB] Length = 331 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 36/110 (32%), Gaps = 23/110 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C F G + + LA + V Sbjct: 64 CNLSC--------LACP-----FHQRAGEEKANMSW-SLAR--ASLDALKHQGTLIVVFE 107 Query: 92 GGEPLLQVD--VPLIQALNKRGF---EIAVETNGT--IEPPQGIDWICVS 134 GGEP L D L +N G +AV TNGT ++ P I W+ + Sbjct: 108 GGEPFLWRDGRHDLHDLVNYAGRLFPRVAVTTNGTFPLDVPADILWVSLD 157 >gi|327311440|ref|YP_004338337.1| molybdenum cofactor biosynthesis protein MoaA [Thermoproteus uzoniensis 768-20] gi|326947919|gb|AEA13025.1| molybdenum cofactor biosynthesis protein (moaA) [Thermoproteus uzoniensis 768-20] Length = 255 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 15/92 (16%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL G + + G D +A + E + + Sbjct: 46 GCNLRCGMCWAWRN----------SSFRLDVGDFMRPDVVARRLAEMARSRGIAQLR--I 93 Query: 91 TGGEPLLQVDVPLIQALNK--RGFEIAVETNG 120 +GGEP + L+ L + VETNG Sbjct: 94 SGGEPTIAP-RHLLAVLKSVPESYTFIVETNG 124 >gi|310642884|ref|YP_003947642.1| radical sam domain protein [Paenibacillus polymyxa SC2] gi|309247834|gb|ADO57401.1| Radical SAM domain protein [Paenibacillus polymyxa SC2] Length = 323 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 18/86 (20%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT--GGEPLLQVDVPL 103 +C +C + K R + + + I++ + ++ ++ GGEPLL D+ L Sbjct: 30 RCTYC------YEDFKMKRMSPETI-QAIKKFLTRRVPQLKHLTISWFGGEPLLAKDILL 82 Query: 104 -----IQALNKRG----FEIAVETNG 120 Q L+ + + I++ TNG Sbjct: 83 NISEHAQKLSTKNNLTSYLISITTNG 108 >gi|290968352|ref|ZP_06559893.1| pyruvate formate-lyase 1-activating enzyme [Megasphaera genomosp. type_1 str. 28L] gi|290781627|gb|EFD94214.1| pyruvate formate-lyase 1-activating enzyme [Megasphaera genomosp. type_1 str. 28L] Length = 279 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 21/100 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK- 83 VF GC++ +CR+C + V D+ ++ Sbjct: 27 VF--LQGCHM-----------RCRYC----HNPETWACSGGTVRTAEDVFKQALRYRSYW 69 Query: 84 -EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 G ++GGE LLQ++ L + G A++T G Sbjct: 70 KNGGGITVSGGEALLQMEFVTELFRLAKAEGIHTAIDTAG 109 >gi|257126689|ref|YP_003164803.1| glycyl-radical enzyme activating protein family [Leptotrichia buccalis C-1013-b] gi|257050628|gb|ACV39812.1| glycyl-radical enzyme activating protein family [Leptotrichia buccalis C-1013-b] Length = 272 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 23/113 (20%) Query: 29 FSGCNLWSGREQDRLSAQ-------------------CRFCDTDFVGIQGTKGGRYNVDQ 69 F GC L + + + C C +++ Sbjct: 25 FKGCPLRCLWCSNPETQKLENEFWDYDGSLYKGNKTSCSGC--PAANTLKQVAKDMTLEE 82 Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 + ++ + G L+GGE L+ + L + L + A+ET G Sbjct: 83 VFAIVMKDENFYRNSGGGVTLSGGEILVNSAFAIELFEKLKEEYINTAIETTG 135 >gi|228477166|ref|ZP_04061804.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus salivarius SK126] gi|228251185|gb|EEK10356.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus salivarius SK126] Length = 266 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 66/179 (36%), Gaps = 38/179 (21%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +C++C DT ++ Sbjct: 16 TESFGSVDGPG---------IRFIVFMQGC-----------KMRCQYCHNPDT--WAMES 53 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117 K V+ + D ++G ++GGE +LQ+D L K G ++ Sbjct: 54 NKAVERTVEDVLDEALRFRHFWGEQGG-ITVSGGEAMLQIDFVTALFTEAKKLGIHCTLD 112 Query: 118 TNG-----TIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 T G T E + +D + V+ D+K ++ K V Q N + + + ++ Sbjct: 113 TCGFAYRNTPEYHEVVDKLLAVTDLVLLDIKEIDPEQHKFVTRQPNKNILEFAQYLSDK 171 >gi|85859326|ref|YP_461528.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB] gi|85722417|gb|ABC77360.1| radical SAM superfamily [Syntrophus aciditrophicus SB] Length = 408 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 14/99 (14%) Query: 31 GC------NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 GC +W LS C C + LI++ I Sbjct: 56 GCIGYPGHPVWEVTRACNLS--CIHC---HAKSSQAASDELTTAEGKRLIDQ--IASMPA 108 Query: 85 GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 R V TGGEPL++ D+ L++ K G + TNGT+ Sbjct: 109 FRTLVFTGGEPLVRKDIFELLRHSQKAGLANILATNGTL 147 >gi|305664178|ref|YP_003860466.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230] gi|304378747|gb|ADM28586.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230] Length = 268 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 23/96 (23%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTK----GGRYNVDQLADLIEEQWITGEKEGR 86 GCNL +C FC + G+ G Y+ +++ ++ I EK Sbjct: 57 GCNL-----------RCGFC---WSWRSGSHVIDVGKFYSSQEVSTILIS--IAREKGYN 100 Query: 87 YCVLTGGEPLLQVDVPLIQALNKRGFEIA--VETNG 120 Y ++GGEP L + LI ++ I +ETNG Sbjct: 101 YVRISGGEPTLCFN-HLIDVISNIPQRITFILETNG 135 >gi|281353482|gb|EFB29066.1| hypothetical protein PANDA_017831 [Ailuropoda melanoleuca] Length = 605 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + K +++ L G + R LT Sbjct: 42 CNL-----------RCQYCMPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 87 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GGEPL++ D V ++ L++ G I + TNG Sbjct: 88 GGEPLIRPDVVDIVARLHQLEGLRTIGITTNG 119 >gi|25169122|emb|CAD47958.1| molybdopterin cofactor synthesis protein moaA [Arthrobacter nicotinovorans] Length = 371 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 23/108 (21%) Query: 21 GRVAVFCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEE 76 GR A R S CNL +C +C + +G + + V ++++ Sbjct: 35 GRRATDMRLSLTDKCNL-----------RCTYC----MPAEGLEWLSKQAVMSASEIVRI 79 Query: 77 QWI-TGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRG--FEIAVETNG 120 I G R LTGGEPL+ V +I L + I++ TNG Sbjct: 80 VGIGVGRLGVRELRLTGGEPLVRHDLVDIIAELRRNHPELPISMTTNG 127 >gi|3024141|sp|Q44118|MOAA_ARTNI RecName: Full=Probable molybdopterin cofactor synthesis protein A gi|2288875|emb|CAA71779.1| molybdopterin co-factor synthesis protein [Arthrobacter nicotinovorans] Length = 355 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 23/108 (21%) Query: 21 GRVAVFCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEE 76 GR A R S CNL +C +C + +G + + V ++++ Sbjct: 18 GRRATDMRLSLTDKCNL-----------RCTYC----MPAEGLEWLSKQAVMSASEIVRI 62 Query: 77 QWI-TGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRG--FEIAVETNG 120 I G R LTGGEPL+ V +I L + I++ TNG Sbjct: 63 VGIGVGRLGVRELRLTGGEPLVRHDLVDIIAELRRNHPELPISMTTNG 110 >gi|871980|emb|CAA55583.1| molybdopterin cofactor synthesis protein [Arthrobacter nicotinovorans] Length = 374 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 23/108 (21%) Query: 21 GRVAVFCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEE 76 GR A R S CNL +C +C + +G + + V ++++ Sbjct: 37 GRRATDMRLSLTDKCNL-----------RCTYC----MPAEGLEWLSKQAVMSASEIVRI 81 Query: 77 QWI-TGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRG--FEIAVETNG 120 I G R LTGGEPL+ V +I L + I++ TNG Sbjct: 82 VGIGVGRLGVRELRLTGGEPLVRHDLVDIIAELRRNHPELPISMTTNG 129 >gi|16082274|ref|NP_394732.1| tRNA-modifying enzyme [Thermoplasma acidophilum DSM 1728] gi|10640621|emb|CAC12399.1| putative target YPL207w of the HAP2 transcriptional complex related protein [Thermoplasma acidophilum] Length = 312 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 41/117 (35%), Gaps = 28/117 (23%) Query: 44 SAQCRFC------DTDFVGIQGTKG--GRYNVDQLADLI----------EEQWITGEKEG 85 + C FC D+ + + ++ Q LI +E W Sbjct: 63 TENCAFCWRFQGFDSMHISDEDDPEFILEESIKQHLKLISGFKGNPKVSKEIWEEATHPK 122 Query: 86 RY-CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE-PPQGID------WICV 133 LTG EP L + LI A KRG + TNGT+ + +D ++ V Sbjct: 123 HMAISLTG-EPTLYTRLGELIAAAKKRGISTFLVTNGTLPSVLERLDPLPTQLYVTV 178 >gi|15927848|ref|NP_375381.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus N315] gi|21283915|ref|NP_647003.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus MW2] gi|49487049|ref|YP_044270.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus MSSA476] gi|57650853|ref|YP_187068.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus COL] gi|87161067|ref|YP_494854.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88196183|ref|YP_501000.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268706|ref|YP_001247649.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus JH9] gi|150394772|ref|YP_001317447.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus JH1] gi|151222380|ref|YP_001333202.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus str. Newman] gi|161510463|ref|YP_001576122.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253314609|ref|ZP_04837822.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253729935|ref|ZP_04864100.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257794612|ref|ZP_05643591.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A9781] gi|258408785|ref|ZP_05681069.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A9763] gi|258422383|ref|ZP_05685295.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A9719] gi|258439773|ref|ZP_05690519.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A9299] gi|258442671|ref|ZP_05691231.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A8115] gi|258446630|ref|ZP_05694785.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A6300] gi|258450252|ref|ZP_05698344.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A6224] gi|258450738|ref|ZP_05698797.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A5948] gi|258455375|ref|ZP_05703335.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A5937] gi|262048529|ref|ZP_06021413.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus D30] gi|262052284|ref|ZP_06024488.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus 930918-3] gi|269203899|ref|YP_003283168.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus ED98] gi|282893707|ref|ZP_06301939.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A8117] gi|282922136|ref|ZP_06329832.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A9765] gi|282926815|ref|ZP_06334442.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A10102] gi|283767359|ref|ZP_06340274.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus H19] gi|284025292|ref|ZP_06379690.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus 132] gi|294848805|ref|ZP_06789550.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A9754] gi|295404949|ref|ZP_06814762.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A8819] gi|300910930|ref|ZP_07128380.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus TCH70] gi|304379453|ref|ZP_07362188.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54037811|sp|P65389|MOAA_STAAW RecName: Full=Molybdenum cofactor biosynthesis protein A gi|54041471|sp|P65388|MOAA_STAAN RecName: Full=Molybdenum cofactor biosynthesis protein A gi|66773819|sp|P69848|MOAA_STAA8 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|81648816|sp|Q6G754|MOAA_STAAS RecName: Full=Molybdenum cofactor biosynthesis protein A gi|81693942|sp|Q5HDT9|MOAA_STAAC RecName: Full=Molybdenum cofactor biosynthesis protein A gi|123722359|sp|Q2FEM4|MOAA_STAA3 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|172049050|sp|A6QJA8|MOAA_STAAE RecName: Full=Molybdenum cofactor biosynthesis protein A gi|189028696|sp|A6U3Z2|MOAA_STAA2 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|189028697|sp|A5IV50|MOAA_STAA9 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|189028698|sp|A8Z366|MOAA_STAAT RecName: Full=Molybdenum cofactor biosynthesis protein A gi|52695872|pdb|1TV7|A Chain A, Structure Of The S-Adenosylmethionine Dependent Enzyme Moaa gi|52695873|pdb|1TV7|B Chain B, Structure Of The S-Adenosylmethionine Dependent Enzyme Moaa gi|52695874|pdb|1TV8|A Chain A, Structure Of Moaa In Complex With S-Adenosylmethionine gi|52695875|pdb|1TV8|B Chain B, Structure Of Moaa In Complex With S-Adenosylmethionine gi|109157588|pdb|2FB3|A Chain A, Structure Of Moaa In Complex With 5'-Gtp gi|109157589|pdb|2FB3|B Chain B, Structure Of Moaa In Complex With 5'-Gtp gi|13702068|dbj|BAB43360.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus N315] gi|21205357|dbj|BAB96051.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus MW2] gi|49245492|emb|CAG43969.1| putative molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus MSSA476] gi|57285039|gb|AAW37133.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus COL] gi|87127041|gb|ABD21555.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203741|gb|ABD31551.1| molybdopterin cofactor biosynthesis protein A, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741775|gb|ABQ50073.1| GTP cyclohydrolase subunit MoaA [Staphylococcus aureus subsp. aureus JH9] gi|149947224|gb|ABR53160.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus JH1] gi|150375180|dbj|BAF68440.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus str. Newman] gi|160369272|gb|ABX30243.1| molybdenum (Mo2+) cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253726382|gb|EES95111.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257788584|gb|EEV26924.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A9781] gi|257840468|gb|EEV64928.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A9763] gi|257841814|gb|EEV66251.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A9719] gi|257847549|gb|EEV71551.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A9299] gi|257851792|gb|EEV75726.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A8115] gi|257854698|gb|EEV77646.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A6300] gi|257856344|gb|EEV79253.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A6224] gi|257861521|gb|EEV84323.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A5948] gi|257862586|gb|EEV85354.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A5937] gi|259159803|gb|EEW44843.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus 930918-3] gi|259163387|gb|EEW47945.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus D30] gi|262076189|gb|ACY12162.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus ED98] gi|282591266|gb|EFB96339.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A10102] gi|282593604|gb|EFB98597.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A9765] gi|282763765|gb|EFC03893.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A8117] gi|283461238|gb|EFC08322.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus H19] gi|285817930|gb|ADC38417.1| Molybdenum cofactor biosynthesis protein A [Staphylococcus aureus 04-02981] gi|294824184|gb|EFG40608.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A9754] gi|294969894|gb|EFG45912.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A8819] gi|298695526|gb|ADI98748.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus ED133] gi|300887910|gb|EFK83105.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus TCH70] gi|304341985|gb|EFM07889.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312830616|emb|CBX35458.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129647|gb|EFT85638.1| molybdenum (Mo2+) cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus CGS03] gi|315198198|gb|EFU28529.1| molybdenum (Mo2+) cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus CGS01] gi|329314952|gb|AEB89365.1| Molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus T0131] gi|329723623|gb|EGG60152.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus 21172] gi|329730314|gb|EGG66704.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus 21193] gi|329732017|gb|EGG68372.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus 21189] Length = 340 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D DFV + K D++A + + G K+ R +TGG Sbjct: 22 DRCNFRCDYCMPKEVFGD-DFVFL--PKNELLTFDEMARIAKVYAELGVKKIR---ITGG 75 Query: 94 EPLLQVDVP-LIQALNKR-GFE-IAVETNG 120 EPL++ D+ LI LN+ G E I + TNG Sbjct: 76 EPLMRRDLDVLIAKLNQIDGIEDIGLTTNG 105 >gi|303232902|ref|ZP_07319585.1| pyruvate formate-lyase 1-activating enzyme [Atopobium vaginae PB189-T1-4] gi|302480994|gb|EFL44071.1| pyruvate formate-lyase 1-activating enzyme [Atopobium vaginae PB189-T1-4] Length = 278 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 16/78 (20%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 R+ VF GC +C++C T G V ++ D+ E Sbjct: 19 RLVVF--TQGCPF-----------RCKYCHNPETWGFKT-GTTMKVQEIMDIYERNRPFY 64 Query: 82 EKEGRYCVLTGGEPLLQV 99 K G +GGEPL Q Sbjct: 65 RKGG--ITCSGGEPLAQP 80 >gi|261855208|ref|YP_003262491.1| molybdenum cofactor biosynthesis protein A [Halothiobacillus neapolitanus c2] gi|261835677|gb|ACX95444.1| molybdenum cofactor biosynthesis protein A [Halothiobacillus neapolitanus c2] Length = 328 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 61/174 (35%), Gaps = 32/174 (18%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPL--- 96 DR +C +C + D++ L+ + E R +TGGEPL Sbjct: 21 DRCDLRCFYC-MPEGFNDFEVPEHWLTADEIERLL---GVMAEMGLRRVRITGGEPLVRR 76 Query: 97 -LQVDVPLIQALNKRGFE-IAVETN----GTIEPP---QGIDWICVSPKAGCDLKIKGGQ 147 ++ V I AL G IA+ TN G + P G+D I VS L Sbjct: 77 GIEDIVRRIDAL--PGIRDIALSTNATRLGKMAAPLKAAGVDRINVS------LDTLDAD 128 Query: 148 ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF------LEENTNLAISYCFQN 195 K + Q +S + L P+ E++ + +C ++ Sbjct: 129 RFKQI-TQGKLSKVIDGLMAAKDAGLSPIKLNMVVMKGVNEDDVESVLEFCIEH 181 >gi|169633583|ref|YP_001707319.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter baumannii SDF] gi|226704988|sp|B0VQD7|PQQE_ACIBS RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|169152375|emb|CAP01316.1| coenzyme PQQ synthesis protein E (Coenzyme PQQ synthesis protein III) [Acinetobacter baumannii] Length = 384 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 20/174 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C D+ + + D+ ++ G + + Sbjct: 8 PLWLLAELTYRCLLQCPYCSNPLDYAQHK----NELTTQEWFDVFDQARQMGAVQLGF-- 61 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140 +GGEPL+ Q L+ ++ GF + T+G + G+D I +S +A Sbjct: 62 -SGGEPLVRQDLEQLVAHAHQLGFYTNLVTSGMGLTEQRISHLKQAGLDHIQISFQASDP 120 Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 + K F Q +D+ L + + + I C + Sbjct: 121 VLNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIDKIIELCLE 173 >gi|307325385|ref|ZP_07604587.1| hopanoid biosynthesis associated radical SAM protein HpnH [Streptomyces violaceusniger Tu 4113] gi|306888854|gb|EFN19838.1| hopanoid biosynthesis associated radical SAM protein HpnH [Streptomyces violaceusniger Tu 4113] Length = 341 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 36/118 (30%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 39 CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 80 Query: 92 GGEPLLQVDVPLIQA-LNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + I L +R + + TN + + + SP + I G +E Sbjct: 81 GGEPLMHPQIDEIARQLVQRKKYVFLCTN-AMLLRKKMHLFTPSPYFAFAVHIDGLRE 137 >gi|301063602|ref|ZP_07204116.1| radical SAM domain protein [delta proteobacterium NaphS2] gi|300442250|gb|EFK06501.1| radical SAM domain protein [delta proteobacterium NaphS2] Length = 366 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 17/95 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 S CNL +C++C G ++ EE E Sbjct: 15 TSKCNL-----------RCKYC--YHFNSAGETKEDIETEEWLRFFEELKQCVVME---V 58 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 L GGEP L+ D+ ++ +L + ++ +NGT+ Sbjct: 59 CLGGGEPFLRDDLKEILSSLARNQIRFSIMSNGTL 93 >gi|297379966|gb|ADI34853.1| Probable molybdenum cofactor biosynthesis protein A [Helicobacter pylori v225d] Length = 293 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 25/154 (16%) Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIA--VETN 119 +D + + ++ G K+ R +TGGEPLL+ I L+ E+A + TN Sbjct: 13 ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDEFIAKLHDYNKEVALVLSTN 69 Query: 120 GTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169 G + D + V S K+ LKI LK V S + + Sbjct: 70 GFLLKKMAKDLKNAGLSRVNVSLDSLKSDRVLKISQKDALKKTLEGVEESLKVGLKL--- 126 Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQ 203 + ++ + +E L + Y S+Q Sbjct: 127 KLNMVVIKSVNDDEILEL-LEYAKDR-----SIQ 154 >gi|258422713|ref|ZP_05685618.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A9635] gi|257847124|gb|EEV71133.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus A9635] Length = 340 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D DFV + K D++A + + G K+ R +TGG Sbjct: 22 DRCNFRCDYCMPKEVFGD-DFVFL--PKNELLTFDEMARIAKVYAELGVKKIR---ITGG 75 Query: 94 EPLLQVDVP-LIQALNKR-GFE-IAVETNG 120 EPL++ D+ LI LN+ G E I + TNG Sbjct: 76 EPLMRRDLDVLIAKLNQIDGIEDIGLTTNG 105 >gi|303234218|ref|ZP_07320864.1| six-Cys-in-45 modification radical SAM protein [Finegoldia magna BVS033A4] gi|302494759|gb|EFL54519.1| six-Cys-in-45 modification radical SAM protein [Finegoldia magna BVS033A4] Length = 452 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 29/113 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRY--C 88 CNL +C +C F G + Y +++ + + ++ Sbjct: 101 CNL-----------KCEYC---FASQGDFGGHKAYMTEEVGKKALKYLVDNSGSRKFLEV 146 Query: 89 VLTGGEPLLQVDVPLIQALNKRG----------FEIAVETNGTIEPPQGIDWI 131 GGEPL+ D L++ L K G F + TNG + ID+I Sbjct: 147 DFFGGEPLM--DFELVKKLVKYGNEIAEEKGKKFRFTITTNGVLLDDDKIDFI 197 >gi|302379699|ref|ZP_07268184.1| six-Cys-in-45 modification radical SAM protein [Finegoldia magna ACS-171-V-Col3] gi|302312606|gb|EFK94602.1| six-Cys-in-45 modification radical SAM protein [Finegoldia magna ACS-171-V-Col3] Length = 452 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 29/113 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRY--C 88 CNL +C +C F G + Y +++ + + ++ Sbjct: 101 CNL-----------KCEYC---FASQGDFGGHKAYMTEEVGKKALKYLVDNSGSRKFLEV 146 Query: 89 VLTGGEPLLQVDVPLIQALNKRG----------FEIAVETNGTIEPPQGIDWI 131 GGEPL+ D L++ L K G F + TNG + ID+I Sbjct: 147 DFFGGEPLM--DFELVKKLVKYGNEIAEEKGKKFRFTITTNGVLLDDDKIDFI 197 >gi|301059499|ref|ZP_07200412.1| radical SAM domain protein [delta proteobacterium NaphS2] gi|300446394|gb|EFK10246.1| radical SAM domain protein [delta proteobacterium NaphS2] Length = 381 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 21/102 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C +G K D I+ R Sbjct: 66 CNL-----------DCHYC-----YSRGRKIPGMTTKTAKDAID---WLQNVGCRVLAYM 106 Query: 92 GGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GGEPL++ D + + + +RGF + + TNG + ID I Sbjct: 107 GGEPLIRKDFIIEITRYAVERGFFVYLPTNGILLDAPFIDEI 148 >gi|297587385|ref|ZP_06946030.1| radical SAM domain protein [Finegoldia magna ATCC 53516] gi|297575366|gb|EFH94085.1| radical SAM domain protein [Finegoldia magna ATCC 53516] Length = 452 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 29/113 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRY--C 88 CNL +C +C F G + Y +++ + + ++ Sbjct: 101 CNL-----------KCEYC---FASQGDFGGHKAYMTEEVGKKALKYLVDNSGSRKFLEV 146 Query: 89 VLTGGEPLLQVDVPLIQALNKRG----------FEIAVETNGTIEPPQGIDWI 131 GGEPL+ D L++ L K G F + TNG + ID+I Sbjct: 147 DFFGGEPLM--DFELVKKLVKYGNEIADEKGKKFRFTITTNGVLLDDDKIDFI 197 >gi|221317881|ref|ZP_03599175.1| YfkA [Bacillus subtilis subsp. subtilis str. JH642] gi|221322154|ref|ZP_03603448.1| YfkA [Bacillus subtilis subsp. subtilis str. SMY] gi|255767189|ref|NP_388677.2| Fe-S oxidoreductase, radical SAM superfamily [Bacillus subtilis subsp. subtilis str. 168] gi|321314524|ref|YP_004206811.1| putative Fe-S oxidoreductase, radical SAM superfamily protein [Bacillus subtilis BSn5] gi|261278024|sp|O34400|YFKA_BACSU RecName: Full=Putative protein yfkA gi|225184816|emb|CAB12625.2| putative Fe-S oxidoreductase, radical SAM superfamily [Bacillus subtilis subsp. subtilis str. 168] gi|291483237|dbj|BAI84312.1| hypothetical protein BSNT_01329 [Bacillus subtilis subsp. natto BEST195] gi|320020798|gb|ADV95784.1| putative Fe-S oxidoreductase, radical SAM superfamily protein [Bacillus subtilis BSn5] Length = 373 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 13/92 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L +EE R +TGGEP+L + Sbjct: 45 RCEHCAVGYT-LQPKDPNALPIDLLLKRLEEI-----PRLRSISITGGEPMLSLKSVKEY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 VPL++ ++RG + +N T++ + +WI Sbjct: 99 VVPLLKYAHERGVRTQINSNLTLDI-ERYEWI 129 >gi|169824972|ref|YP_001692583.1| arylsulfatase regulator [Finegoldia magna ATCC 29328] gi|167831777|dbj|BAG08693.1| arylsulfatase regulator [Finegoldia magna ATCC 29328] Length = 452 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 29/113 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRY--C 88 CNL +C +C F G + Y +++ + + ++ Sbjct: 101 CNL-----------KCEYC---FASQGDFGGHKAYMTEEVGKKALKYLVDNSGSRKFLEV 146 Query: 89 VLTGGEPLLQVDVPLIQALNKRG----------FEIAVETNGTIEPPQGIDWI 131 GGEPL+ D L++ L K G F + TNG + ID+I Sbjct: 147 DFFGGEPLM--DFELVKKLVKYGNEIAEEKGKKFRFTITTNGVLLDDDKIDFI 197 >gi|258404207|ref|YP_003196949.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfohalobium retbaense DSM 5692] gi|257796434|gb|ACV67371.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfohalobium retbaense DSM 5692] Length = 208 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 16/93 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCNL + A + + + ++ + Sbjct: 32 TGGCNLHCPTCHNAGLA-----------WHPEEHPLVGRETVLTHLQSHRNWLDG----V 76 Query: 89 VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 V+TGGEP L + L + G ++TNG Sbjct: 77 VITGGEPTLVPGLDQLCRDCLDCGLPCKLDTNG 109 >gi|115709894|ref|XP_783948.2| PREDICTED: similar to MGC84142 protein [Strongylocentrotus purpuratus] gi|115954658|ref|XP_001192455.1| PREDICTED: similar to MGC84142 protein [Strongylocentrotus purpuratus] Length = 669 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 13/112 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N +R + +C++C + K + +++ L + G + R LTG Sbjct: 95 NYLRISLTERCNLRCQYCMPEEGVTLSPKERLLSTEEILHLAKLFVSEGVDKIR---LTG 151 Query: 93 GEPLLQVDV-PLIQALNK-RGF-EIAVETNG-TIE------PPQGIDWICVS 134 GEPL++ D+ +I+ L + G +IA+ TNG T+ G+D I +S Sbjct: 152 GEPLVRKDIVEIIEGLRELEGLKQIAMTTNGVTLAKRLPALKKAGLDLINIS 203 >gi|154488715|ref|ZP_02029564.1| hypothetical protein BIFADO_02022 [Bifidobacterium adolescentis L2-32] gi|154082852|gb|EDN81897.1| hypothetical protein BIFADO_02022 [Bifidobacterium adolescentis L2-32] Length = 280 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 40/140 (28%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G + + IE Sbjct: 58 RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYYEAMVKKIERYA 100 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG------TIEPPQGI 128 + G +GGE ++Q + + + G ++T+G T + I Sbjct: 101 DLFKATGGGITFSGGESMMQP--AFVSRVFHAAKQMGVHTCLDTSGFLGASYTDDMVDDI 158 Query: 129 DWICVSPKAGCDLKIKGGQE 148 D +C+ L +K G E Sbjct: 159 D-LCL-------LDVKSGDE 170 >gi|15925258|ref|NP_372792.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus Mu50] gi|156980583|ref|YP_001442842.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus Mu3] gi|255007046|ref|ZP_05145647.2| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus Mu50-omega] gi|24211997|sp|Q931G4|MOAA_STAAM RecName: Full=Molybdenum cofactor biosynthesis protein A gi|166217891|sp|A7X5J1|MOAA_STAA1 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|14248041|dbj|BAB58430.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus Mu50] gi|156722718|dbj|BAF79135.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus Mu3] Length = 340 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D DFV + K D++A + + G K+ R +TGG Sbjct: 22 DRCNFRCDYCMPKEVFGD-DFVFL--PKNELLTFDEMARIAKVYAELGVKKIR---ITGG 75 Query: 94 EPLLQVDVP-LIQALNKR-GFE-IAVETNG 120 EPL++ D+ LI LN+ G E I + TNG Sbjct: 76 EPLMRRDLDVLIAKLNQIDGIEDIGLTTNG 105 >gi|325289530|ref|YP_004265711.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964931|gb|ADY55710.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 407 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG-RYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C ++ + ++ LI + E + + Sbjct: 47 CNL-----------HCVHC---YMDSDAENDENELSTEEAKKLISDL---AEFKVPVLLF 89 Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +GGEPL++ D L +G + TNGT+ Sbjct: 90 SGGEPLIRPDFFELAAYAAAQGIRPTLSTNGTL 122 >gi|116694994|ref|YP_840570.1| pyrroloquinoline quinone biosynthesis protein PqqE [Ralstonia eutropha H16] gi|113529493|emb|CAJ95840.1| pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein E [Ralstonia eutropha H16] Length = 388 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R C FC + T + Q D+ + G + L+ Sbjct: 21 PLWLLAELTYRCPLHCAFCSNPVDYARHT--AELSTVQWCDVFSQARALGAVQLG---LS 75 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 GGEPLL+ D+ L++ + GF + T+G Sbjct: 76 GGEPLLRKDLEVLVRHAHGLGFYTNLITSG 105 >gi|82751856|ref|YP_417597.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus RF122] gi|123741049|sp|Q2YYS8|MOAA_STAAB RecName: Full=Molybdenum cofactor biosynthesis protein A gi|82657387|emb|CAI81829.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus RF122] Length = 340 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D DFV + K D++A + + G K+ R +TGG Sbjct: 22 DRCNFRCDYCMPKEVFGD-DFVFL--PKNELLTFDEMARIAKVYAELGVKKIR---ITGG 75 Query: 94 EPLLQVDVP-LIQALNKR-GFE-IAVETNG 120 EPL++ D+ LI LN+ G E I + TNG Sbjct: 76 EPLMRRDLDVLIAKLNQIDGIEDIGLTTNG 105 >gi|113461290|ref|YP_719359.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus somnus 129PT] gi|112823333|gb|ABI25422.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus somnus 129PT] Length = 246 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G +V+ L + Sbjct: 21 IRFILFLQGC-----------LMRCKYCHNRDT----WDLHDGKEISVEDLMKEVVTYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A G ++TNG Sbjct: 66 FMNATGGGVTASGGEAILQAEFVRDWFKACKAEGISTCLDTNG 108 >gi|119026009|ref|YP_909854.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium adolescentis ATCC 15703] gi|118765593|dbj|BAF39772.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium adolescentis ATCC 15703] Length = 292 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 40/140 (28%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G + + IE Sbjct: 70 RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYYEAMVKKIERYA 112 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG------TIEPPQGI 128 + G +GGE ++Q + + + G ++T+G T + I Sbjct: 113 DLFKATGGGITFSGGESMMQP--AFVSRVFHAAKQMGVHTCLDTSGFLGASYTDDMVDDI 170 Query: 129 DWICVSPKAGCDLKIKGGQE 148 D +C+ L +K G E Sbjct: 171 D-LCL-------LDVKSGDE 182 >gi|47681506|gb|AAT37518.1| unknown [Prochloron didemni] Length = 340 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 21/96 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL----IEEQWITGEKEGRY 87 CNL +CR C G G ++ +++ + IE+ + Sbjct: 2 CNL-----------RCRMC-----YEWGDNGSYFSKEKVVSIDYPVIEKVIKDLLPGKPF 45 Query: 88 CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 L GGEPLL + +I+ + + G ++ + TNGT+ Sbjct: 46 FGLFGGEPLLYPHIGEVIRLIREGGCKVDIPTNGTL 81 >gi|329929025|ref|ZP_08282827.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp. HGF5] gi|328937014|gb|EGG33443.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp. HGF5] Length = 334 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 8/91 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C G++ + + +++A ++ G + R LTGGEPL++ Sbjct: 22 DRCNLRCVYC-MPEEGMEFQPHDQIMSYEEIAAIMRVLAPMGVSKVR---LTGGEPLVRK 77 Query: 100 DVP-LIQALNK-RGFE-IAVETNGTIEPPQG 127 D+ L+ + G + I++ TNG + P + Sbjct: 78 DLETLVHKIASIEGVQDISLTTNGIMLPSKA 108 >gi|302344373|ref|YP_003808902.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075] gi|301640986|gb|ADK86308.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075] Length = 394 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + A T T G+ +D LAD + + Sbjct: 50 CNLRCAHCYAQAKA------TPNADELTTAEGKRLIDDLAD----------YGSPVMLFS 93 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GGEPL + D+P L + +G + TNGT+ Sbjct: 94 GGEPLARPDLPELARYAVAKGMRAVISTNGTL 125 >gi|296275048|ref|ZP_06857555.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus MR1] Length = 340 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D DFV + K D++A + + G K+ R +TGG Sbjct: 22 DRCNFRCDYCMPKEVFGD-DFVFL--PKNELLTFDEMARIAKVYAELGVKKIR---ITGG 75 Query: 94 EPLLQVDVP-LIQALNKR-GFE-IAVETNG 120 EPL++ D+ LI LN+ G E I + TNG Sbjct: 76 EPLMRRDLDVLIAKLNQIDGIEDIGLTTNG 105 >gi|294788304|ref|ZP_06753547.1| MoaA/NifB/PqqE family protein [Simonsiella muelleri ATCC 29453] gi|294483735|gb|EFG31419.1| MoaA/NifB/PqqE family protein [Simonsiella muelleri ATCC 29453] Length = 477 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 38/121 (31%), Gaps = 26/121 (21%) Query: 25 VFC-------RF-----SGCNLWSGREQDRLSAQCR-----------FCDTDFVGIQGTK 61 VF RF GC G D + C C F + Sbjct: 65 VFVKRPEMPQRFNTEMHYGCPYDCGLCPDHMQHSCLSIVEINRACNLNCPVCFASSGTHQ 124 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 Y + ++ + + + + E E L+GGEP + L A + + + TN Sbjct: 125 TEHYPI-EIVEKMLDAIVANEGEPDVVQLSGGEPTIHPQFFDILAAARKRPIKHLMINTN 183 Query: 120 G 120 G Sbjct: 184 G 184 >gi|320547352|ref|ZP_08041643.1| pyruvate formate-lyase activating enzyme [Streptococcus equinus ATCC 9812] gi|320448050|gb|EFW88802.1| pyruvate formate-lyase activating enzyme [Streptococcus equinus ATCC 9812] Length = 262 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 32/123 (26%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +C++C DT + Sbjct: 16 TESFGSVDGPG---------VRFVIFMQGC-----------KMRCQYCHNPDT-WALESN 54 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117 R D LA+ + + GE G ++GGE +LQ+D L + G ++ Sbjct: 55 KSRVRTVDDVLAEALRYKHFWGENGG--ITVSGGEAMLQIDFVTALFTKAKELGIHCTLD 112 Query: 118 TNG 120 T G Sbjct: 113 TCG 115 >gi|313201322|ref|YP_004039980.1| coenzyme pqq biosynthesis protein e [Methylovorus sp. MP688] gi|312440638|gb|ADQ84744.1| coenzyme PQQ biosynthesis protein E [Methylovorus sp. MP688] Length = 394 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 10/92 (10%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R C FC TD+ +Q + + G + Sbjct: 17 PLWLLAEVTYRCPLHCAFCYNPTDY---DKHTQNELTTEQWIQALRDARKMGALQLG--- 70 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 ++GGEPLL+ D+ +++ + G+ + T+G Sbjct: 71 ISGGEPLLRDDIEDIVREARQLGYYSNLITSG 102 >gi|270292096|ref|ZP_06198311.1| pyruvate formate-lyase-activating enzyme [Streptococcus sp. M143] gi|270279624|gb|EFA25466.1| pyruvate formate-lyase-activating enzyme [Streptococcus sp. M143] Length = 264 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 23/100 (23%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC++ +C++C DT + R D L + + + G Sbjct: 33 VF--LQGCHM-----------RCQYCHNPDT-WAMETNKSRERTVDDVLTEALRYRGFWG 78 Query: 82 EKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVET 118 +K G ++GGE LLQ+D LI ++G ++T Sbjct: 79 DKGG--ITVSGGEALLQIDF-LIAFFTKAKEKGIHCTLDT 115 >gi|167768087|ref|ZP_02440140.1| hypothetical protein CLOSS21_02632 [Clostridium sp. SS2/1] gi|167710416|gb|EDS20995.1| hypothetical protein CLOSS21_02632 [Clostridium sp. SS2/1] gi|291561083|emb|CBL39883.1| Pyruvate-formate lyase-activating enzyme [butyrate-producing bacterium SSC/2] Length = 300 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 46/144 (31%), Gaps = 49/144 (34%) Query: 24 AVFCRFSGCNLWSGREQDRLS--------------AQCRFC------------DTDFVGI 57 VF GC L + S A C C D +VGI Sbjct: 24 TVF--LKGCPLRCKWCANPESQLSQVQILYDKEKCAHCGTCTHVCPNQAISMGDDSYVGI 81 Query: 58 QGTK-------------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 +K G +VD++ + + E+ G ++GGE ++Q Sbjct: 82 DPSKCAGCLQCVKNCPAKALSYEGEAKDVDEVVKVCLQDIDFYEESGGGVTISGGEGMVQ 141 Query: 99 VDV--PLIQALNKRGFEIAVETNG 120 D L+ L + A+ET G Sbjct: 142 PDFVKALLAKLKEHKIHTAIETTG 165 >gi|153940128|ref|YP_001392535.1| glycyl-radical enzyme activating family protein [Clostridium botulinum F str. Langeland] gi|152936024|gb|ABS41522.1| glycyl-radical enzyme activating family protein [Clostridium botulinum F str. Langeland] gi|295320521|gb|ADG00899.1| glycyl-radical enzyme activating family protein [Clostridium botulinum F str. 230613] Length = 300 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 6/84 (7%) Query: 43 LSAQCRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 +C FC T+F + G ++ I + + E+ G +GGEP+L Sbjct: 80 DEGKCNFCGKCTNFCPNNAREYVGKDLTSQEIIKEIIKDEVFYEQSGGGVTFSGGEPMLH 139 Query: 99 VDVP--LIQALNKRGFEIAVETNG 120 D +++ RG ++T+G Sbjct: 140 ADFINGILEECKVRGIHTTIDTSG 163 >gi|149069513|gb|EDM18954.1| molybdenum cofactor synthesis 1 (predicted), isoform CRA_c [Rattus norvegicus] Length = 636 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR+C + K +++ L G + R LT Sbjct: 80 CNL-----------RCRYCMPEEGVSLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 125 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GGEPL++ D V ++ L++ G I V TNG Sbjct: 126 GGEPLIRPDVVDIVARLHQLEGLRTIGVTTNG 157 >gi|253999234|ref|YP_003051297.1| pyrroloquinoline quinone biosynthesis protein PqqE [Methylovorus sp. SIP3-4] gi|253985913|gb|ACT50770.1| coenzyme PQQ biosynthesis protein E [Methylovorus sp. SIP3-4] Length = 395 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 10/92 (10%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R C FC TD+ +Q + + G + Sbjct: 18 PLWLLAEVTYRCPLHCAFCYNPTDY---DKHTQNELTTEQWIQALRDARKMGALQLG--- 71 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 ++GGEPLL+ D+ +++ + G+ + T+G Sbjct: 72 ISGGEPLLRDDIEDIVREARQLGYYSNLITSG 103 >gi|218440390|ref|YP_002378719.1| hopanoid biosynthesis associated radical SAM protein HpnH [Cyanothece sp. PCC 7424] gi|218173118|gb|ACK71851.1| hopanoid biosynthesis associated radical SAM protein HpnH [Cyanothece sp. PCC 7424] Length = 339 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 + GGEPLL + ++Q L +R + + TN I + +D SP + Sbjct: 72 GAPVVSIPGGEPLLHPQIDEIVQGLVQRKKFVYLCTN-AILLEKSLDKFKPSPYLTFSVH 130 Query: 143 IKGGQE 148 + G +E Sbjct: 131 LDGLRE 136 >gi|94499363|ref|ZP_01305901.1| Molybdenum cofactor biosynthesis enzyme [Oceanobacter sp. RED65] gi|94428995|gb|EAT13967.1| Molybdenum cofactor biosynthesis enzyme [Oceanobacter sp. RED65] Length = 330 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 13/98 (13%) Query: 33 NLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 N DR +C +C D F+ + + +Q+ + + G R Sbjct: 13 NYVRISVTDRCDFRCVYCMAEDMTFI----PRKDVLSFEQIELISQAFVELGVTSIR--- 65 Query: 90 LTGGEPLLQVDV-PLIQALNKR-GF-EIAVETNGTIEP 124 LTGGEPL++ ++ L+ LN+ G EI + TNG+ P Sbjct: 66 LTGGEPLIRKNIVDLVAKLNQLDGLNEITMTTNGSQLP 103 >gi|219667971|ref|YP_002458406.1| molybdenum cofactor biosynthesis protein A [Desulfitobacterium hafniense DCB-2] gi|219538231|gb|ACL19970.1| molybdenum cofactor biosynthesis protein A [Desulfitobacterium hafniense DCB-2] Length = 319 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 19/96 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + + +++ + + G ++ R +T Sbjct: 20 CNL-----------RCSYCMPEGGIKKKAHKEILSLETIEQIAFSAVDLGFQKIR---IT 65 Query: 92 GGEPL----LQVDVPLIQALNKRGFE-IAVETNGTI 122 GGEPL + + I L RG + + + TNGT+ Sbjct: 66 GGEPLVRKGIIDVIHQIAQLKSRGLKDLGLTTNGTL 101 >gi|307354674|ref|YP_003895725.1| Radical SAM domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307157907|gb|ADN37287.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571] Length = 492 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 22/99 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL- 90 CNL +C+ C + Q + D+ LI + G V+ Sbjct: 126 CNL-----------KCKHC---YQDAQKALPDELDTDEAKKLIRDFAAAG-----VVVIA 166 Query: 91 -TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQG 127 +GGEPL++ D + ++ G +A+ +NGT+ P+ Sbjct: 167 FSGGEPLMREDFFDIASYAHEEGMYVALASNGTMITPET 205 >gi|282850584|ref|ZP_06259963.1| molybdenum cofactor biosynthesis protein A [Veillonella parvula ATCC 17745] gi|282580077|gb|EFB85481.1| molybdenum cofactor biosynthesis protein A [Veillonella parvula ATCC 17745] Length = 321 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 7/84 (8%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105 C +C + T + + + + + + LTGGEPLL + L+ Sbjct: 24 CPYC----RPAEITPQSQTQLLSVDEWMTILGAFHHIGVKAVRLTGGEPLLYPHIEELLG 79 Query: 106 ALNKRGFE--IAVETNGTIEPPQG 127 + + G+ I++ TNG++ + Sbjct: 80 RIKETGWFEDISMTTNGSLLASRA 103 >gi|158521211|ref|YP_001529081.1| radical SAM domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158510037|gb|ABW67004.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3] Length = 306 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 7/77 (9%) Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPL 103 + C +C K D++A+ I Q+ + L+GGEP + D + Sbjct: 23 SNCVYC----CAGNRGKQRAMTFDEIAENI--QFFIDTYGVQEVCLSGGEPTVHRDFLST 76 Query: 104 IQALNKRGFEIAVETNG 120 + + +G + TNG Sbjct: 77 LDFVRSKGLRTYLHTNG 93 >gi|108757868|ref|YP_632408.1| molybdenum cofactor biosynthesis protein MoaA [Myxococcus xanthus DK 1622] gi|108461748|gb|ABF86933.1| molybdenum cofactor biosynthesis protein MoaA [Myxococcus xanthus DK 1622] Length = 334 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 14/81 (17%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 GR + R S DR + +C +C + GG+ ++ +L + Sbjct: 22 GRRMTYLRLS--------ITDRCNFRCSYC------SPASWGGKRDLLGPEELERITSVF 67 Query: 81 GEKEGRYCVLTGGEPLLQVDV 101 R LTGGEPL++ D+ Sbjct: 68 ARMGIRRVRLTGGEPLIRPDI 88 >gi|257064493|ref|YP_003144165.1| predicted Fe-S oxidoreductase [Slackia heliotrinireducens DSM 20476] gi|256792146|gb|ACV22816.1| predicted Fe-S oxidoreductase [Slackia heliotrinireducens DSM 20476] Length = 356 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 4/83 (4%) Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPL 103 C C + +G + + +I++ I + Y +TGGEPLL + Sbjct: 38 EHCWHCGS---SCTAARGDELSTQEFCSVIDQVKIDFADKLPYLCITGGEPLLRHDFFDI 94 Query: 104 IQALNKRGFEIAVETNGTIEPPQ 126 + ++ GF+ + +NGT+ P+ Sbjct: 95 MGHAHRLGFDWGMTSNGTLITPE 117 >gi|222055542|ref|YP_002537904.1| glycyl-radical enzyme activating protein family [Geobacter sp. FRC-32] gi|221564831|gb|ACM20803.1| glycyl-radical enzyme activating protein family [Geobacter sp. FRC-32] Length = 346 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 46/170 (27%), Gaps = 58/170 (34%) Query: 1 MKLYSIKEI--FLTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------- 46 M I EI F LQ G G +F GC L + + Sbjct: 1 MPTPLITEIQRFC-LQDGPGIRT---TIF--LKGCPLHCPWCHNPENIGSKQEFYFYANR 54 Query: 47 ---CRFCDTDFVGIQG--------------------------------TKGGRYNVDQLA 71 CR C T G G ++ + Sbjct: 55 CTGCRQCQTACTSATGNMDHDCMERTTDRSLCTSCLQCVPACRFGAREAVGKSIPMENIL 114 Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALN-KRGFEIAVET 118 I + G ++GGEPLL + L + L K +A+ET Sbjct: 115 LEAVSDRIFYQPSGGGVTISGGEPLLYPEFTCELARNLKVKENLHVAIET 164 >gi|294495916|ref|YP_003542409.1| radical SAM protein [Methanohalophilus mahii DSM 5219] gi|292666915|gb|ADE36764.1| Radical SAM domain protein [Methanohalophilus mahii DSM 5219] Length = 199 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 15/78 (19%) Query: 72 DLIEEQWITGEKEGRYCVLTG-GEPLLQVDVPL--IQALNKRGFEIAVETNGT------- 121 ++I E K+ + V TG GEP + DV L + L +RG + ++TNG Sbjct: 54 EIITELEKYDLKKYKEIVFTGFGEPTARFDVLLAVTRWLKERGAYVRLDTNGHGQLINPD 113 Query: 122 -----IEPPQGIDWICVS 134 + G+D + VS Sbjct: 114 INVVDLLVDAGLDAVSVS 131 >gi|256379378|ref|YP_003103038.1| Radical SAM domain protein [Actinosynnema mirum DSM 43827] gi|255923681|gb|ACU39192.1| Radical SAM domain protein [Actinosynnema mirum DSM 43827] Length = 327 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 13/108 (12%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 ++ + +C C + + L + G ++GG Sbjct: 9 VFQVHPTRLCTLRCLHC---YSSSGPDVAESLPIGVLGPAVRAAATLGYD---VLNVSGG 62 Query: 94 EPLLQVDV-PLIQALNKRGFEIAVETNGT------IEPPQGIDWICVS 134 EPLL ++ L+ A G V TNG I + +D + VS Sbjct: 63 EPLLYPELRALVGAARDAGMRTIVTTNGLSLSPRRIALLREVDLVAVS 110 >gi|228907890|ref|ZP_04071742.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis IBL 200] gi|228851785|gb|EEM96587.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis IBL 200] Length = 333 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D F+ + D++ L G + R LTG Sbjct: 18 DRCNFRCTYCMPAEVFGPDYPFLQEE----LLLTFDEIERLARLFISMGVNKIR---LTG 70 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 GEPLL+ D+P LI L K G + I + TNG Sbjct: 71 GEPLLRKDLPMLIARLAKLEGLKDIGLTTNG 101 >gi|126667624|ref|ZP_01738593.1| hypothetical protein MELB17_00270 [Marinobacter sp. ELB17] gi|126627893|gb|EAZ98521.1| hypothetical protein MELB17_00270 [Marinobacter sp. ELB17] Length = 295 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 20/95 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C + Q + NV Q+ + + R +L Sbjct: 68 CNL-----------RCNNC--NRSSAQAPEARHINVSQIEQFVADSMAQNRHWRRIRIL- 113 Query: 92 GGEPLLQVD----VPLIQALNKRGFEIAVE--TNG 120 GGEP L D + ++ L + E A+E TNG Sbjct: 114 GGEPTLHPDFLRILEVLSKLKEVFPETAIEVVTNG 148 >gi|328886500|emb|CCA59739.1| putative, Molybdenum cofactor biosynthesis protein A [Streptomyces venezuelae ATCC 10712] Length = 340 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 38 CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + +++ L + + + TN + + ++ SP + I G +E Sbjct: 80 GGEPLMHPQIHEIVRQLVAKRKYVFLCTN-AMLLRKKLENFTPSPYFAFAVHIDGLRE 136 >gi|282917614|ref|ZP_06325366.1| LOW QUALITY PROTEIN: molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus D139] gi|282318576|gb|EFB48934.1| LOW QUALITY PROTEIN: molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus D139] Length = 217 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D DFV + K D++A + + G K+ R +TGG Sbjct: 22 DRCNFRCDYCMPKEVFGD-DFVFL--PKNELLTFDEMARIAKVYAELGVKKIR---ITGG 75 Query: 94 EPLLQVDVP-LIQALNKR-GFE-IAVETNG 120 EPL++ D+ LI LN+ G E I + TNG Sbjct: 76 EPLMRRDLDVLIAKLNQIDGIEDIGLTTNG 105 >gi|94986650|ref|YP_594583.1| Fe-S oxidoreductases [Lawsonia intracellularis PHE/MN1-00] gi|94730899|emb|CAJ54262.1| predicted Fe-S oxidoreductases [Lawsonia intracellularis PHE/MN1-00] Length = 437 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 6/97 (6%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 C L + + C+ C G ++ ++ LI+ G + T Sbjct: 70 CKLIAWEVTRSCNLACKHC--RAEAHMDPYPGEFSTEEAKALIDTFPEVG---NPIIIFT 124 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127 GGEP+++ DV L+ +G + NGT+ P+ Sbjct: 125 GGEPMMRADVYELMAYATSKGLRCVMSPNGTLITPET 161 >gi|116750579|ref|YP_847266.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116699643|gb|ABK18831.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB] Length = 428 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 30/132 (22%) Query: 32 CNLWSG-----REQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 CNL G R + + D V L++ +T + Sbjct: 93 CNLKCGMCIQHRHASPAAPGLTWFD---------PERELPVSAWVRLMDR--VTTFRPAL 141 Query: 87 YCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI-------EPPQGIDWICVSPKAG 138 Y TGGEP+L I+ +R + + TNGT+ +G+ + VS Sbjct: 142 YV--TGGEPMLYPGFEEFIKEAGRRHLFVQLATNGTLLSGNAGMLVEEGVGIVIVS---- 195 Query: 139 CDLKIKGGQELK 150 D + E++ Sbjct: 196 MDGPARVHDEVR 207 >gi|307707088|ref|ZP_07643885.1| hypothetical protein ydeM [Streptococcus mitis SK321] gi|307617614|gb|EFN96784.1| hypothetical protein ydeM [Streptococcus mitis SK321] Length = 423 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 16/96 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C + + Y+ ++ + I ++ + + T Sbjct: 74 CNLT-----------CSYCFENDKDRKPFLSSEYDGKKIVNFILDELNFKKYKSLDICFT 122 Query: 92 GGEPL--LQVDVPLIQALNKR---GFEIAVETNGTI 122 GGEPL Q L + L+++ + TNGTI Sbjct: 123 GGEPLYNFQFIRNLCETLDEKLAIPISYTLITNGTI 158 >gi|167754739|ref|ZP_02426866.1| hypothetical protein CLORAM_00243 [Clostridium ramosum DSM 1402] gi|237732780|ref|ZP_04563261.1| glycyl-radical enzyme activating protein [Mollicutes bacterium D7] gi|167705571|gb|EDS20150.1| hypothetical protein CLORAM_00243 [Clostridium ramosum DSM 1402] gi|229384150|gb|EEO34241.1| glycyl-radical enzyme activating protein [Coprobacillus sp. D7] Length = 305 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 5/72 (6%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 Y++ QL + I+E + +G +GGEPL+Q + +++A + A+ET Sbjct: 104 DSEAYDIKQLMEKIKEDRVFFRDDGG-VTFSGGEPLMQGEFLYEILKACQEEKIHTAIET 162 Query: 119 N--GTIEPPQGI 128 G++E + I Sbjct: 163 TMYGSLELIKKI 174 >gi|257058597|ref|YP_003136485.1| radical SAM protein [Cyanothece sp. PCC 8802] gi|256588763|gb|ACU99649.1| Radical SAM domain protein [Cyanothece sp. PCC 8802] Length = 388 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 4/89 (4%) Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPL 103 A C FC +F + L I+ I + RY V TGGEP L Sbjct: 59 ANCGFC--NFAR-DRFPQEEWQFVGLEAGIDAIDILYREGIRYLVFTGGEPTLHPHLTDF 115 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWIC 132 I+ ++ + V TN I P I + Sbjct: 116 IRYSSQLNIKCIVVTNAGILTPAKIHELT 144 >gi|255513446|gb|EET89712.1| Radical SAM domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 319 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 62/179 (34%), Gaps = 58/179 (32%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD--------- 72 A+ GC+L CRFC + I G +N D Sbjct: 48 TPAI-----GCDL-----------GCRFC---WRLIPEEIGVNWNELNAVDKWDNPEYII 88 Query: 73 ---LIEEQWITGEK-----------------EGRYC--VLTGGEPLLQVDVP-LIQALNK 109 +IE++ I ++ LTG EP + LI+ +K Sbjct: 89 DNMIIEQRRIVSGYKSNADTPLRMKRWAEANNPKHVAISLTG-EPTFYPKLSKLIEGFHK 147 Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL---KLVFPQVNVSPENYIG 165 RG + TNGT+ P+ I+ + P + ++ E K+V P++ + Y+ Sbjct: 148 RGISTFLVTNGTL--PEAIERLTTLP-TQLYVSVEAPDEETYNKVVRPKIKDTWNRYLK 203 >gi|238795843|ref|ZP_04639356.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia mollaretii ATCC 43969] gi|238720306|gb|EEQ12109.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia mollaretii ATCC 43969] Length = 215 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 54/163 (33%), Gaps = 31/163 (19%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101 +C +C DT G V++L G +GGE +LQ + Sbjct: 2 RCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFMNASGGGVTASGGEAILQAEFV 57 Query: 102 -PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155 +A ++ G ++TNG + + +D DL + +++ Q Sbjct: 58 RDWFRACHEEGIHTCLDTNGFVRRYDPVIDELLD--------ATDLVMLDLKQMDDSVHQ 109 Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198 V N+ +F R+ + N + Y P W Sbjct: 110 NLVGVSNHRTLEFARY--------LAKRNQKTWVRYVVV-PGW 143 >gi|254171897|ref|ZP_04878573.1| radical SAM family protein [Thermococcus sp. AM4] gi|214033793|gb|EEB74619.1| radical SAM family protein [Thermococcus sp. AM4] Length = 333 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 GEP+L + L++ +KRGF + TNGT+ Sbjct: 142 GEPMLYPYMGDLVEEFHKRGFTTFIVTNGTVP 173 >gi|218294743|ref|ZP_03495597.1| molybdenum cofactor biosynthesis protein A [Thermus aquaticus Y51MC23] gi|218244651|gb|EED11175.1| molybdenum cofactor biosynthesis protein A [Thermus aquaticus Y51MC23] Length = 325 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 18/103 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C G V+++ +E + G R+ T Sbjct: 22 CNL-----------HCLYC-HPLGLEVAEPPGTLTVEEVDHFLEAASLLGLSAVRF---T 66 Query: 92 GGEPLLQVDVP--LIQALNKRGFE-IAVETNGTIEPPQGIDWI 131 GGEPL++ ++P + +A K G E +A+ TNG + + + + Sbjct: 67 GGEPLVRKELPQMIAKAREKEGIEDVAITTNGLLFAKRAKELV 109 >gi|194039216|ref|XP_001928743.1| PREDICTED: molybdenum cofactor biosynthesis protein 1 [Sus scrofa] Length = 637 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C++C G+ T +++ L G + R L Sbjct: 80 CNL-----------RCQYC-MPEEGVPLTPRADLLTTEEILTLARLFVKEGVDKIR---L 124 Query: 91 TGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 TGGEPL++ D V ++ L++ G I + TNG Sbjct: 125 TGGEPLIRPDVVDIVARLHQLEGLRTIGITTNG 157 >gi|218245553|ref|YP_002370924.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 8801] gi|218166031|gb|ACK64768.1| Radical SAM domain protein [Cyanothece sp. PCC 8801] Length = 388 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 4/89 (4%) Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPL 103 A C FC +F + L I+ I + RY V TGGEP L Sbjct: 59 ANCGFC--NFAR-DRFPQEEWQFVGLEAGIDAIDILYREGIRYLVFTGGEPTLHPHLTDF 115 Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWIC 132 I+ ++ + V TN I P I + Sbjct: 116 IRYSSQLNIKCIVVTNAGILTPAKIHELT 144 >gi|167746910|ref|ZP_02419037.1| hypothetical protein ANACAC_01622 [Anaerostipes caccae DSM 14662] gi|167653870|gb|EDR97999.1| hypothetical protein ANACAC_01622 [Anaerostipes caccae DSM 14662] Length = 304 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 9/144 (6%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117 ++G V ++ +++ + E+ G L+GGE L Q + L+ A + G E Sbjct: 107 SEGETKTVQEVLNVVLQDKDFYEESGGGITLSGGEFLSQPEFAAELLLASKENGLHTCCE 166 Query: 118 TNGTIEPP------QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD-FER 170 T G +P + +D+I K K K G + P N+ G + R Sbjct: 167 TTGFADPEIFNGVIKHLDYILFDMKHWNTAKHKEGTGVSNDLPLFNMKHAIQAGKEVLPR 226 Query: 171 FSLQPMDGPFLEENTNLAISYCFQ 194 + P E+ LA + Sbjct: 227 IPVIPGFNDSFEDAARLADTLLKA 250 >gi|170735553|ref|YP_001774667.1| radical SAM domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169821591|gb|ACA96172.1| Radical SAM domain protein [Burkholderia cenocepacia MC0-3] Length = 214 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 25/86 (29%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC S +C C DT GG VD + + W++G Sbjct: 25 FQGC-----------SIRCPGCISMDT-----WANAGGETTVDAVLAQV-RNWLSGATG- 66 Query: 86 RYCVLTGGEPLLQVD--VPLIQALNK 109 ++GGEP Q D + L+Q L K Sbjct: 67 --ITISGGEPFDQPDALIHLLQGLRK 90 >gi|89896234|ref|YP_519721.1| hypothetical protein DSY3488 [Desulfitobacterium hafniense Y51] gi|89335682|dbj|BAE85277.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 326 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 19/96 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + + +++ + + G ++ R +T Sbjct: 27 CNL-----------RCSYCMPEGGIKKKAHKEILSLETIEQIAFSAVDLGFQKIR---IT 72 Query: 92 GGEPL----LQVDVPLIQALNKRGFE-IAVETNGTI 122 GGEPL + + I L RG + + + TNGT+ Sbjct: 73 GGEPLVRKGIIDVIHQIAQLKSRGLKDLGLTTNGTL 108 >gi|18978090|ref|NP_579447.1| tRNA-modifying enzyme [Pyrococcus furiosus DSM 3638] gi|18893883|gb|AAL81842.1| hypothetical protein PF1718 [Pyrococcus furiosus DSM 3638] Length = 338 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 GEP+L + L++ +KRGF + TNGT+ Sbjct: 147 GEPMLYPYMGDLVEEFHKRGFTTFIVTNGTVP 178 >gi|88856676|ref|ZP_01131332.1| MoaA-related protein [marine actinobacterium PHSC20C1] gi|88814137|gb|EAR24003.1| MoaA-related protein [marine actinobacterium PHSC20C1] Length = 336 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 16/89 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R S Q T+ VD++A L E G KE +LT Sbjct: 92 CNLACDYCCVRSSPQ-------------TERRALGVDRVAQLAAEAVEAGVKE---LILT 135 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GGEP L D+ + A + TNG Sbjct: 136 GGEPFLLPDIDEVVAACATHLPTTLLTNG 164 >gi|170717241|ref|YP_001784359.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus somnus 2336] gi|168825370|gb|ACA30741.1| pyruvate formate-lyase activating enzyme [Haemophilus somnus 2336] Length = 246 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C++C DT G +V+ L + Sbjct: 21 IRFILFLQGC-----------LMRCKYCHNRDT----WDLHDGKEISVEDLMKEVVTYRH 65 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A G ++TNG Sbjct: 66 FMNATGGGVTASGGEAVLQAEFVRDWFKACKAEGISTCLDTNG 108 >gi|307721838|ref|YP_003892978.1| GTP cyclohydrolase subunit MoaA [Sulfurimonas autotrophica DSM 16294] gi|306979931|gb|ADN09966.1| GTP cyclohydrolase subunit MoaA [Sulfurimonas autotrophica DSM 16294] Length = 321 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 24/170 (14%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 +R + +C++C + F + + ++L + ++ G K+ R +TGGEPLL+ Sbjct: 19 ERCNFRCQYCMPEKPFSWVPKEN--LLSFEELFEFMKVAIDEGVKKIR---ITGGEPLLR 73 Query: 99 VDVP-LIQALNK--RGFEIAVETN-----GTIEPP--QGIDWICVS---PKAGCDLKIKG 145 D+ I+ + ++A+ TN GT + G+ I VS K I G Sbjct: 74 EDLDKFIKMIYDYEPSIDLAMTTNAFLLKGTAQRLKNAGLKRINVSIDTLKPEVAQAIAG 133 Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 LK V V + + + + ++ PM +E + + YC + Sbjct: 134 KDVLKNVLEGVEEARKVGLKV---KVNMVPMKNMNADEIVD-VLEYCKER 179 >gi|242398619|ref|YP_002994043.1| Pyruvate-formate lyase-activating enzyme [Thermococcus sibiricus MM 739] gi|242265012|gb|ACS89694.1| Pyruvate-formate lyase-activating enzyme [Thermococcus sibiricus MM 739] Length = 301 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119 G V++L IE+ + G +GGEPL Q V ++ L KR V+T+ Sbjct: 104 GRVITVEELLTEIEKDIKLYDDSGGGVTFSGGEPLSQPKFLVESLKELKKRYIHTTVDTS 163 Query: 120 G 120 G Sbjct: 164 G 164 >gi|237796639|ref|YP_002864191.1| glycyl-radical enzyme activating family protein [Clostridium botulinum Ba4 str. 657] gi|229263902|gb|ACQ54935.1| glycyl-radical enzyme activating family protein [Clostridium botulinum Ba4 str. 657] Length = 300 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 6/84 (7%) Query: 43 LSAQCRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 +C FC T+F + G ++ I + + E+ G +GGEP+L Sbjct: 80 DEGKCNFCGKCTNFCPNNAREYVGKDLTSQEIIKEIIKDEVFYEQSGGGVTFSGGEPMLH 139 Query: 99 VDVP--LIQALNKRGFEIAVETNG 120 D +++ RG ++T+G Sbjct: 140 ADFINGILEECKVRGIHTTIDTSG 163 >gi|197118653|ref|YP_002139080.1| pyranopterin triphosphate synthase [Geobacter bemidjiensis Bem] gi|197088013|gb|ACH39284.1| pyranopterin triphosphate synthase [Geobacter bemidjiensis Bem] Length = 326 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 25/180 (13%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLT 91 N DR + +CR+C G++ + + L + E G ++ R +T Sbjct: 12 NYLRLSVTDRCNLRCRYC-MPEEGVEKLDHSQVLSYADLLRISTEAVAAGIEKIR---VT 67 Query: 92 GGEPLLQVDVPLIQALNKRG-----FEIAVETNGTI--EPPQGIDWICV--------SPK 136 GGEPL++ + I L + G E+ + TNG + E QG+ V S K Sbjct: 68 GGEPLVRKGI--ISFLERLGALPGLKELVLTTNGLLLKEMAQGLREAGVQRLNISLDSLK 125 Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196 I G ELK V + + + GF + ++ M G +E + + + P Sbjct: 126 PETFAAITRGGELKRVLDGLEAAEK--AGFPPHKINVVVMRGVNDDEILDF-VELTMKRP 182 >gi|159038368|ref|YP_001537621.1| radical SAM domain-containing protein [Salinispora arenicola CNS-205] gi|157917203|gb|ABV98630.1| Radical SAM domain protein [Salinispora arenicola CNS-205] Length = 530 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 66/198 (33%), Gaps = 40/198 (20%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA-DLIEEQWITGEKEGRYC 88 +GCNL C C F G Y +D + + + ++ E E Sbjct: 105 TGCNL-----------DCPIC---FADSGHQPDG-YTIDLAQCERMLDVFVASEGEAEVV 149 Query: 89 VLTGGEPLLQ-VDVPLIQALNKRGFE-IAVETNGTIEPPQGIDWICV----SPKAGCDLK 142 + +GGEP + + + A R + + TNG + P ++ Sbjct: 150 MFSGGEPTIHRQILEFVDAAQDRPIRAVNLNTNGIRLASDRAFVAALGERNRPGRAVNIY 209 Query: 143 IK------------GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAIS 190 ++ G++L+ V Q + +G + ++ E IS Sbjct: 210 LQFDGLDEQTHRKIRGRDLR-VIKQRALDNCAEVGLTVTLVAT--VERGLNEHELGAIIS 266 Query: 191 YCFQNPKWR-LSVQ--TH 205 + +P R +S Q TH Sbjct: 267 HGLAHPAVRSVSFQPVTH 284 >gi|52548370|gb|AAU82219.1| coenzyme PQQ synthesis protein [uncultured archaeon GZfos11H11] Length = 317 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 17/88 (19%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY- 87 +GC+ +CR C F + G + ++ E+ + + Sbjct: 22 LTGCDF-----------RCRGC---FRPARDGGGTLLSPEETLKRAEQACLKHYGKLPTK 67 Query: 88 CVLTGGEPLLQV--DVPLIQALNKRGFE 113 ++TGGEP L + L++ L ++GFE Sbjct: 68 AMITGGEPTLDKEFLLTLVKGLKEKGFE 95 >gi|317499378|ref|ZP_07957646.1| glycyl-radical enzyme activating protein family [Lachnospiraceae bacterium 5_1_63FAA] gi|316893347|gb|EFV15561.1| glycyl-radical enzyme activating protein family [Lachnospiraceae bacterium 5_1_63FAA] Length = 300 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 46/144 (31%), Gaps = 49/144 (34%) Query: 24 AVFCRFSGCNLWSGREQDRLS--------------AQCRFC------------DTDFVGI 57 VF GC L + S A C C D +VGI Sbjct: 24 TVF--LKGCPLRCKWCANPESQLSQVQILYDKEKCAHCGTCTHVCPNQAISMGDDSYVGI 81 Query: 58 QGTK-------------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 +K G +VD++ + + E+ G ++GGE ++Q Sbjct: 82 DPSKCAGCLQCVKNCPAKALSYEGEAKDVDEVVKVCLQDIDFYEESGGGVTISGGEGMVQ 141 Query: 99 VDV--PLIQALNKRGFEIAVETNG 120 D L+ L + A+ET G Sbjct: 142 PDFVKALLAKLKEHKIHTAIETTG 165 >gi|240102832|ref|YP_002959141.1| tRNA-modifying enzyme [Thermococcus gammatolerans EJ3] gi|239910386|gb|ACS33277.1| Radical SAM protein [Thermococcus gammatolerans EJ3] Length = 336 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 GEP+L + L++ +KRGF + TNGT+ Sbjct: 145 GEPMLYPYMGDLVEEFHKRGFTTFIVTNGTVP 176 >gi|160902962|ref|YP_001568543.1| radical SAM domain-containing protein [Petrotoga mobilis SJ95] gi|160360606|gb|ABX32220.1| Radical SAM domain protein [Petrotoga mobilis SJ95] Length = 422 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C+ C G N+ + + + + V+T Sbjct: 108 CNL-----------NCKHC---TASANEVFRGTLNLRDIYKIFDYFIAMNL---KIVVIT 150 Query: 92 GGEPLLQVDVPLIQALNKRGF--EIAVETNGTI 122 GGEPL++ D P I + ++ F +I + TNGT+ Sbjct: 151 GGEPLIRKDFPEIISYLRKNFKGKIVIMTNGTL 183 >gi|315231780|ref|YP_004072216.1| Fe-S oxidoreductase [Thermococcus barophilus MP] gi|315184808|gb|ADT84993.1| Fe-S oxidoreductase [Thermococcus barophilus MP] Length = 326 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Query: 70 LADLIEEQWITGEKEGRYCVLT-GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 + D I + +E ++ ++ GEP L + L++ +KRGF + TNGT+ Sbjct: 116 IKDRINVKKYEEAQEPKHAAISLSGEPTLYPYIGDLVEEFHKRGFTTFIVTNGTVP 171 >gi|229029864|ref|ZP_04185934.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1271] gi|228731479|gb|EEL82391.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1271] Length = 337 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 18/98 (18%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + +Q D++ L G ++ R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPD--YAFLQEEF--LLTFDEIERLARLFISMGVEKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQAL-NKRGFE-IAVETNGTIEPPQG 127 GEPLL+ D+P LI L G + I + TNG Q Sbjct: 75 GEPLLRKDLPQLIARLTKLEGLKDIGLTTNGVHLAKQA 112 >gi|297565177|ref|YP_003684149.1| molybdenum cofactor biosynthesis protein A [Meiothermus silvanus DSM 9946] gi|296849626|gb|ADH62641.1| molybdenum cofactor biosynthesis protein A [Meiothermus silvanus DSM 9946] Length = 324 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 33/145 (22%) Query: 32 CNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL C +C D Q G V+ + + + + G + R+ Sbjct: 22 CNL-----------HCLYCHPLD----WEQSEPPGTLTVEDVRNFLAAMRLLGLESVRF- 65 Query: 89 VLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNGTIE-------PPQGIDWICVSPKAGC 139 TGGEPL++ ++ +I+A + G IA+ TNG + G+ I +S A Sbjct: 66 --TGGEPLVRKELSQMIEAAREVGVPDIAITTNGMLFKRKAKELVGAGLGRINLSMDAVT 123 Query: 140 DLK---IKGGQELKLVFPQVNVSPE 161 + G ++K V+ + + E Sbjct: 124 PEVFKTMTRGGDVKRVWEAIETAWE 148 >gi|237653498|ref|YP_002889812.1| pyrroloquinoline quinone biosynthesis protein PqqE [Thauera sp. MZ1T] gi|237624745|gb|ACR01435.1| coenzyme PQQ biosynthesis protein E [Thauera sp. MZ1T] Length = 381 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 6/93 (6%) Query: 30 SGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 G LW E R +C +C+ + + + ++ ++ + G + + Sbjct: 13 QGKPLWLSLELTYRCPLKCTWCNNP-LDFEDYAAKELSTEEWKQVLRDARAIGALQLGF- 70 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 TGGEPL + D+ L+ + GF + T+G Sbjct: 71 --TGGEPLQRADLEELVAHADGLGFYTNLITSG 101 >gi|119719613|ref|YP_920108.1| radical SAM domain-containing protein [Thermofilum pendens Hrk 5] gi|119524733|gb|ABL78105.1| Radical SAM domain protein [Thermofilum pendens Hrk 5] Length = 609 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 4/89 (4%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L + +R C +C F + +++ + ++ + +T + LTGG Sbjct: 151 LINIVLTNRCDLSCFYC--FFFASKSGYIYEPSLEHIRYMLRQARLTEPVKPPAIQLTGG 208 Query: 94 EPLLQVD-VPLIQALNKRGF-EIAVETNG 120 EP L+ D + +I+ + GF I + TNG Sbjct: 209 EPTLRDDLLEIIKMAREEGFTHIQLNTNG 237 >gi|322807498|emb|CBZ05073.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum H04402 065] Length = 300 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 6/84 (7%) Query: 43 LSAQCRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 +C FC T+F + G ++ I + + E+ G +GGEP+L Sbjct: 80 DEGKCNFCGKCTNFCPNNAREYVGKDLTSQEIIKEIIKDEVFYEQSGGGVTFSGGEPMLH 139 Query: 99 VDVP--LIQALNKRGFEIAVETNG 120 D +++ RG ++T+G Sbjct: 140 ADFINGILEECKFRGIHTTIDTSG 163 >gi|168210897|ref|ZP_02636522.1| putative radical SAM domain protein [Clostridium perfringens B str. ATCC 3626] gi|182626733|ref|ZP_02954474.1| putative radical SAM domain protein [Clostridium perfringens D str. JGS1721] gi|182627210|ref|ZP_02954916.1| putative radical SAM domain protein [Clostridium perfringens D str. JGS1721] gi|170711047|gb|EDT23229.1| putative radical SAM domain protein [Clostridium perfringens B str. ATCC 3626] gi|177907394|gb|EDT70085.1| putative radical SAM domain protein [Clostridium perfringens D str. JGS1721] gi|177907956|gb|EDT70545.1| putative radical SAM domain protein [Clostridium perfringens D str. JGS1721] Length = 436 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 7/77 (9%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 C +C + +K +V + ++I++ + +L+GGEP L ++ I Sbjct: 118 CLYC---YNKENISKYEIIDVKNIEEIIKQCDPKILEG---IILSGGEPFLYENIEEIFI 171 Query: 107 LNKR-GFEIAVETNGTI 122 L K+ ++A+ +NG++ Sbjct: 172 LCKKYNLKVAMVSNGSL 188 >gi|74317041|ref|YP_314781.1| GTP cyclohydrolase subunit MoaA [Thiobacillus denitrificans ATCC 25259] gi|74056536|gb|AAZ96976.1| Elongator protein 3/MiaB/NifB [Thiobacillus denitrificans ATCC 25259] Length = 327 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 13/76 (17%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 R S DR +C +C F G + + D++ L+ G + Sbjct: 17 VRLS--------VTDRCDLRCSYCMPEGFKGFE-EPADWLDFDEIERLLGAFARLGVRRV 67 Query: 86 RYCVLTGGEPLLQVDV 101 R LTGGEPLL+ D+ Sbjct: 68 R---LTGGEPLLRRDI 80 >gi|220931286|ref|YP_002508194.1| Radical SAM domain protein [Halothermothrix orenii H 168] gi|219992596|gb|ACL69199.1| Radical SAM domain protein [Halothermothrix orenii H 168] Length = 450 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 25/94 (26%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C + KG + D + +I E G + VL+ Sbjct: 122 CNLSC--------EGCW-------AGKYEKGNSLDFDTIDRIINEAKELGIY---FIVLS 163 Query: 92 GGEPLLQVDVPLIQALNKR---GFEIAVETNGTI 122 GGEP + L K GF + TNGT+ Sbjct: 164 GGEPTVYPH--LFDIFEKHQDVGFMMY--TNGTL 193 >gi|307594547|ref|YP_003900864.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307549748|gb|ADN49813.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429] Length = 503 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 18/91 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C + +++ +++E G L+ Sbjct: 146 CNLKC--------MHC------YQNAGRPLPNELALEEKLRVVKELDEAGVPA---IALS 188 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 GGEP + D P++ +N+RGF A+ TNGT Sbjct: 189 GGEPTVHRDFWPVLAEINRRGFYSAIATNGT 219 >gi|193216143|ref|YP_001997342.1| radical SAM domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193089620|gb|ACF14895.1| Radical SAM domain protein [Chloroherpeton thalassium ATCC 35110] Length = 353 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C G K R ++A+ + K + LT Sbjct: 20 CNLT-----------CAYC--YERGDAKYKSRRPMSLEIAEKALRLAASSGK-AFHVQLT 65 Query: 92 GGEPLLQVDVPL-----IQALNKRGFEIAVETNGTI 122 GGEP L+ D+ L +A++ I+++TNGT+ Sbjct: 66 GGEPTLEQDLVLEIIKKTRAVSPES-TISLQTNGTL 100 >gi|147678958|ref|YP_001213173.1| molybdenum cofactor biosynthesis enzyme [Pelotomaculum thermopropionicum SI] gi|189028691|sp|A5CYZ0|MOAA_PELTS RecName: Full=Molybdenum cofactor biosynthesis protein A gi|146275055|dbj|BAF60804.1| molybdenum cofactor biosynthesis enzyme [Pelotomaculum thermopropionicum SI] Length = 325 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 12/101 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 N DR + +C +C G++ G ++++ ++ +TG K+ R LT Sbjct: 10 NYLRISVTDRCNLRCVYC-MPEEGVRSLPHGEILRLEEIETVVRAAALTGVKKIR---LT 65 Query: 92 GGEPLLQV-DVPLIQALNKRGFE----IAVETNGTIEPPQG 127 GGEPL++ L++ + G IA+ TNG + P + Sbjct: 66 GGEPLVRKGLEELVRRV--SGIPGIDDIALTTNGLLLPSRA 104 >gi|220932446|ref|YP_002509354.1| Radical SAM domain protein [Halothermothrix orenii H 168] gi|219993756|gb|ACL70359.1| Radical SAM domain protein [Halothermothrix orenii H 168] Length = 462 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 29/111 (26%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + G + +K R + + +I E G + VL+ Sbjct: 122 CNL-----------NCTGC---WAG-KYSKSDRLEFEVIDRIITEAKELGIY---FIVLS 163 Query: 92 GGEPLLQVDVPLIQALNKR---GFEIAVETNGTIEPPQGIDWIC----VSP 135 GGEP L L K GF + TNGT+ + D + VSP Sbjct: 164 GGEPTLYPR--LFDIFEKHQDVGFLMY--TNGTLIDEEMADRMVEVGNVSP 210 >gi|329911258|ref|ZP_08275466.1| Coenzyme PQQ synthesis protein E [Oxalobacteraceae bacterium IMCC9480] gi|327545979|gb|EGF31067.1| Coenzyme PQQ synthesis protein E [Oxalobacteraceae bacterium IMCC9480] Length = 375 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 9/91 (9%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 W E R C FC + + + + +++E G + + Sbjct: 8 PYWLLAELTYRCPLHCAFC---YNPVNYESVRNELTTAEWFKVMQEARALGAVQLGF--- 61 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPLL+ D+ L+ ++ GF + T+G Sbjct: 62 SGGEPLLRDDLEALVTEAHRLGFYTNLITSG 92 >gi|288930424|ref|YP_003434484.1| radical SAM protein [Ferroglobus placidus DSM 10642] gi|288892672|gb|ADC64209.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642] Length = 317 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 25/114 (21%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI--------EEQWITGE 82 GCNL C++C + + ++ + + + D++ + + Sbjct: 56 GCNL-----------NCKYCWGWKIRFENSEVRKMPEEVVKDVLCQIERVSHDRLVKKRK 104 Query: 83 KEGRYCVLTGGEPLLQVD--VPLIQAL----NKRGFEIAVETNGTIEPPQGIDW 130 TG EP LQ D + +++ L ++ +ETNG + I++ Sbjct: 105 YRVGVVRFTGNEPTLQWDHILEVLKLLDKSDEAEKLKVIIETNGILAGMGKINF 158 >gi|315230320|ref|YP_004070756.1| radical SAM domain-containing protein [Thermococcus barophilus MP] gi|315183348|gb|ADT83533.1| radical SAM domain protein [Thermococcus barophilus MP] Length = 188 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 10/85 (11%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI- 122 +++++ +++E + G GGEP + ++ PLI+ L K G + + TNG + Sbjct: 1 MSIEEVVRILKENGVKLAFFG------GGEPTIDRELKPLIKQLKKEGISVWLITNGELL 54 Query: 123 --EPPQGIDWICVSPKAGCDLKIKG 145 E + + + S KA D K Sbjct: 55 DKELVELVKGVTFSIKAFDDELHKR 79 >gi|260891246|ref|ZP_05902509.1| pyruvate formate-lyase-activating enzyme [Leptotrichia hofstadii F0254] gi|260859273|gb|EEX73773.1| pyruvate formate-lyase-activating enzyme [Leptotrichia hofstadii F0254] Length = 272 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 23/113 (20%) Query: 29 FSGCNLWSGREQDRLSAQ-------------------CRFCDTDFVGIQGTKGGRYNVDQ 69 F GC L + + + C C +++ Sbjct: 25 FKGCPLRCLWCSNPETQKLENEFWDYDGSLYKGNKNQCSGC--PAANSLKQVAKDMTLEE 82 Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 + +++ + G L+GGE L+ + L + L + A+ET G Sbjct: 83 VFEIVMKDENFYRNSGGGVTLSGGEILVNSAFAIELFEKLKEEYINTAIETTG 135 >gi|23014386|ref|ZP_00054205.1| COG0535: Predicted Fe-S oxidoreductases [Magnetospirillum magnetotacticum MS-1] Length = 449 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 16/98 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C + + + + D + + + + + + + Sbjct: 176 CNLRCTM--------CGW----EIWKDNSG---FMEDAVFERVIAEGKASGIKTMHILAG 220 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGI 128 GEP L V +++ GF++ + TNGT P I Sbjct: 221 QGEPFLHPRVFEMLEHAVAEGFQVGIVTNGTPFTPDKI 258 >gi|299143706|ref|ZP_07036786.1| molybdenum cofactor biosynthesis protein A [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518191|gb|EFI41930.1| molybdenum cofactor biosynthesis protein A [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 311 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 22/127 (17%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLI 104 +C +C + K ++Q+ +I+ ++ + + TGGEPLL+ +PL Sbjct: 23 RCIYC-MPY-NQSFDKVNLIPMEQIEQIIK---VSAQNGIKKIRFTGGEPLLREGLLPLC 77 Query: 105 QAL-NKRGF-EIAVETNGTIEPPQGIDWI------------CVSPKAGCDLKIKGGQELK 150 + NK G EI + TNG+ D + K D I G +LK Sbjct: 78 HKISNKIGIDEICLTTNGSFLKDMAKDLKKVNVKRINLSLDTLDSKKFSD--ITRGGKLK 135 Query: 151 LVFPQVN 157 ++ Sbjct: 136 STLEGLD 142 >gi|91202286|emb|CAJ75346.1| similar to iron sulfur [Fe-S] heme biosynthesis protein nirJ [Candidatus Kuenenia stuttgartiensis] Length = 406 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 20/95 (21%) Query: 31 GCNLWSGREQDRLSAQCRFCD--TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCNL CR D T + + + D I E Sbjct: 66 GCNLEC--------IHCRRLDVSTTLAKDDMSTKEAF---EFVDAIVEVG------NPIL 108 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 VL+GGEPL + D+ + + +G +A+ TNGT+ Sbjct: 109 VLSGGEPLFRPDIFDIAKHAVSKGLSVALATNGTL 143 >gi|223042523|ref|ZP_03612572.1| molybdenum cofactor biosynthesis protein A [Staphylococcus capitis SK14] gi|222444186|gb|EEE50282.1| molybdenum cofactor biosynthesis protein A [Staphylococcus capitis SK14] Length = 341 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 12/98 (12%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 R S DR + +C +C + G + + ++ I E Sbjct: 17 IRLS--------VTDRCNFRCDYCMPKEIFGDDFVFLPKEELLTFEEMTRISRIYAELGV 68 Query: 86 RYCVLTGGEPLLQVDV-PLIQALNK-RGFE-IAVETNG 120 + +TGGEPLL+ ++ LI+ LN+ G E I + TNG Sbjct: 69 KKIRITGGEPLLRRNLYQLIEQLNEIEGIEDIGLTTNG 106 >gi|53716136|ref|YP_106486.1| radical SAM domain-containing protein [Burkholderia mallei ATCC 23344] gi|53723185|ref|YP_112170.1| MoaA/NifB/PqqE family protein [Burkholderia pseudomallei K96243] gi|121597095|ref|YP_990580.1| radical SAM domain-containing protein [Burkholderia mallei SAVP1] gi|124381469|ref|YP_001025070.1| radical SAM domain-containing protein [Burkholderia mallei NCTC 10229] gi|126442706|ref|YP_001064046.1| radical SAM domain-containing protein [Burkholderia pseudomallei 668] gi|126446642|ref|YP_001079414.1| radical SAM domain-containing protein [Burkholderia mallei NCTC 10247] gi|126457567|ref|YP_001076959.1| radical SAM domain-containing protein [Burkholderia pseudomallei 1106a] gi|167004131|ref|ZP_02269901.1| radical SAM domain protein [Burkholderia mallei PRL-20] gi|167725215|ref|ZP_02408451.1| radical SAM domain protein [Burkholderia pseudomallei DM98] gi|167744145|ref|ZP_02416919.1| radical SAM domain protein [Burkholderia pseudomallei 14] gi|167821343|ref|ZP_02453023.1| radical SAM domain protein [Burkholderia pseudomallei 91] gi|167829683|ref|ZP_02461154.1| radical SAM domain protein [Burkholderia pseudomallei 9] gi|167851154|ref|ZP_02476662.1| radical SAM domain protein [Burkholderia pseudomallei B7210] gi|167899785|ref|ZP_02487186.1| radical SAM domain protein [Burkholderia pseudomallei 7894] gi|167916447|ref|ZP_02503538.1| radical SAM domain protein [Burkholderia pseudomallei 112] gi|167924302|ref|ZP_02511393.1| radical SAM domain protein [Burkholderia pseudomallei BCC215] gi|217424165|ref|ZP_03455664.1| radical SAM domain protein [Burkholderia pseudomallei 576] gi|226194079|ref|ZP_03789680.1| radical SAM domain protein [Burkholderia pseudomallei Pakistan 9] gi|237510356|ref|ZP_04523071.1| hopanoid biosynthesis associated radical SAM protein HpnH [Burkholderia pseudomallei MSHR346] gi|238563776|ref|ZP_04610730.1| radical SAM domain protein [Burkholderia mallei GB8 horse 4] gi|242311528|ref|ZP_04810545.1| radical SAM domain protein [Burkholderia pseudomallei 1106b] gi|254176119|ref|ZP_04882777.1| radical SAM domain protein [Burkholderia mallei ATCC 10399] gi|254182611|ref|ZP_04889205.1| radical SAM domain protein [Burkholderia pseudomallei 1655] gi|254187163|ref|ZP_04893678.1| radical SAM domain protein [Burkholderia pseudomallei Pasteur 52237] gi|254203496|ref|ZP_04909857.1| radical SAM domain protein [Burkholderia mallei FMH] gi|254205372|ref|ZP_04911725.1| radical SAM domain protein [Burkholderia mallei JHU] gi|254265363|ref|ZP_04956228.1| radical SAM domain protein [Burkholderia pseudomallei 1710a] gi|254296457|ref|ZP_04963913.1| radical SAM domain protein [Burkholderia pseudomallei 406e] gi|254356179|ref|ZP_04972456.1| radical SAM domain protein [Burkholderia mallei 2002721280] gi|52213599|emb|CAH39653.1| MoaA/NifB/PqqE family protein [Burkholderia pseudomallei K96243] gi|52422106|gb|AAU45676.1| radical SAM domain protein [Burkholderia mallei ATCC 23344] gi|121224893|gb|ABM48424.1| radical SAM domain protein [Burkholderia mallei SAVP1] gi|126222197|gb|ABN85702.1| radical SAM domain protein [Burkholderia pseudomallei 668] gi|126231335|gb|ABN94748.1| radical SAM domain protein [Burkholderia pseudomallei 1106a] gi|126239496|gb|ABO02608.1| radical SAM domain protein [Burkholderia mallei NCTC 10247] gi|147745735|gb|EDK52814.1| radical SAM domain protein [Burkholderia mallei FMH] gi|147754958|gb|EDK62022.1| radical SAM domain protein [Burkholderia mallei JHU] gi|148025162|gb|EDK83331.1| radical SAM domain protein [Burkholderia mallei 2002721280] gi|157806428|gb|EDO83598.1| radical SAM domain protein [Burkholderia pseudomallei 406e] gi|157934846|gb|EDO90516.1| radical SAM domain protein [Burkholderia pseudomallei Pasteur 52237] gi|160697161|gb|EDP87131.1| radical SAM domain protein [Burkholderia mallei ATCC 10399] gi|184213146|gb|EDU10189.1| radical SAM domain protein [Burkholderia pseudomallei 1655] gi|217392630|gb|EEC32653.1| radical SAM domain protein [Burkholderia pseudomallei 576] gi|225934024|gb|EEH30010.1| radical SAM domain protein [Burkholderia pseudomallei Pakistan 9] gi|235002561|gb|EEP51985.1| hopanoid biosynthesis associated radical SAM protein HpnH [Burkholderia pseudomallei MSHR346] gi|238519989|gb|EEP83453.1| radical SAM domain protein [Burkholderia mallei GB8 horse 4] gi|242134767|gb|EES21170.1| radical SAM domain protein [Burkholderia pseudomallei 1106b] gi|243060461|gb|EES42647.1| radical SAM domain protein [Burkholderia mallei PRL-20] gi|254216365|gb|EET05750.1| radical SAM domain protein [Burkholderia pseudomallei 1710a] gi|261826331|gb|ABN00507.2| radical SAM domain protein [Burkholderia mallei NCTC 10229] Length = 386 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 22/120 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R +V++ ++E + Sbjct: 38 CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEPLL ++P +++ + KR + + TN + + +D SP + + G +E+ Sbjct: 79 AGGEPLLHKEMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYAPSPYFVWSVHLDGDREM 137 >gi|332157942|ref|YP_004423221.1| tRNA-modifying enzyme [Pyrococcus sp. NA2] gi|331033405|gb|AEC51217.1| tRNA-modifying enzyme [Pyrococcus sp. NA2] Length = 339 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%) Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 EE W E L+G EP+L + L++ +KRGF + TNGT+ Sbjct: 133 FEEAW---EPRHAAISLSG-EPMLYPYMGDLVEEFHKRGFTTFIVTNGTVP 179 >gi|210630155|ref|ZP_03296270.1| hypothetical protein COLSTE_00154 [Collinsella stercoris DSM 13279] gi|210160628|gb|EEA91599.1| hypothetical protein COLSTE_00154 [Collinsella stercoris DSM 13279] Length = 342 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNK-RGFE-IAVE 117 G +++A + G R LTGGEPL+ VPLI+ + G E I++ Sbjct: 11 HGELLTAEEIAHFVRLVAKEGITRVR---LTGGEPLVSHRIVPLIEEIRAIPGIEDISLT 67 Query: 118 TNGTIEP 124 TNG + P Sbjct: 68 TNGALLP 74 >gi|167908101|ref|ZP_02495306.1| radical SAM domain protein [Burkholderia pseudomallei NCTC 13177] Length = 387 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 22/120 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R +V++ ++E + Sbjct: 38 CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEPLL ++P +++ + KR + + TN + + +D SP + + G +E+ Sbjct: 79 AGGEPLLHKEMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYAPSPYFVWSVHLDGDREM 137 >gi|297584204|ref|YP_003699984.1| molybdenum cofactor biosynthesis protein A [Bacillus selenitireducens MLS10] gi|297142661|gb|ADH99418.1| molybdenum cofactor biosynthesis protein A [Bacillus selenitireducens MLS10] Length = 339 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 20/123 (16%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 D+ + +C +C D F + K + +++ L + E R +TGGE Sbjct: 22 DKCNFRCSYCMPPEIFDKYFKFL--PKDEILSFEEITRL--STIMVKEAGIRKLRVTGGE 77 Query: 95 PLL-QVDVPLIQALNK-RGF-EIAVETNGTIEP-------PQGIDWICVSPKAGCDLKIK 144 PL+ LI LNK G +IA+ TNG++ P G++ + +S + D K + Sbjct: 78 PLMRHEVSKLIAMLNKIEGVDDIAMTTNGSLLPKHAKALKEAGLNRVTISLDSLNDEKFR 137 Query: 145 GGQ 147 Sbjct: 138 KIN 140 >gi|76817760|ref|YP_336444.1| radical SAM domain-containing protein [Burkholderia pseudomallei 1710b] gi|76582233|gb|ABA51707.1| radical SAM domain protein [Burkholderia pseudomallei 1710b] Length = 371 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 22/120 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R +V++ ++E + Sbjct: 23 CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 63 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEPLL ++P +++ + KR + + TN + + +D SP + + G +E+ Sbjct: 64 AGGEPLLHKEMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYAPSPYFVWSVHLDGDREM 122 >gi|169828828|ref|YP_001698986.1| hypothetical protein Bsph_3362 [Lysinibacillus sphaericus C3-41] gi|168993316|gb|ACA40856.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 370 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D + ++E + +TGGEP++ Sbjct: 42 RCAHCAVGYT-LQNKDPEALPIDLILQRLDEI-----PHLKTLSITGGEPMMSKKSVQSY 95 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 +PL++ ++RG + +N T+EP Sbjct: 96 VLPLLKYAHERGVRTQINSNLTLEP 120 >gi|168700072|ref|ZP_02732349.1| molybdenum cofactor biosynthesis protein A [Gemmata obscuriglobus UQM 2246] Length = 337 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 15/87 (17%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL---- 96 DR + +C +C + +++ + G + R LTGGEPL Sbjct: 30 DRCNLRCTYC-MPENVTFQDRSELLTFEEIVAFVRVAVPLGVNKVR---LTGGEPLMRKE 85 Query: 97 LQVDVPLIQA---LNKRGFEIAVETNG 120 L V L+ A L G TNG Sbjct: 86 LHKLVRLLTAVPGLTDIGLT----TNG 108 >gi|134281782|ref|ZP_01768489.1| radical SAM domain protein [Burkholderia pseudomallei 305] gi|254192549|ref|ZP_04898988.1| radical SAM domain protein [Burkholderia pseudomallei S13] gi|134246844|gb|EBA46931.1| radical SAM domain protein [Burkholderia pseudomallei 305] gi|169649307|gb|EDS82000.1| radical SAM domain protein [Burkholderia pseudomallei S13] Length = 386 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 22/120 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R +V++ ++E + Sbjct: 38 CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEPLL ++P +++ + KR + + TN + + +D SP + + G +E+ Sbjct: 79 AGGEPLLHKEMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYAPSPYFVWSVHLDGDREM 137 >gi|332110913|gb|EGJ11090.1| molybdenum cofactor biosynthesis protein A [Rubrivivax benzoatilyticus JA2] Length = 372 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 25/136 (18%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D + + + +++ + G ++ R LTGGE Sbjct: 48 DRCNFRCGYCMPSEVFDRRYRFL--PHDALLSFEEITRVASVFLAHGVRKLR---LTGGE 102 Query: 95 PLLQVDVP-LIQALNKR------GFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ +P L++ L E+ + TNG++ G+ + VS A D Sbjct: 103 PLLRKQLPSLVEQLAALRTVDGTPPELTLTTNGSLLARLARPLREAGLTRVTVSLDALDD 162 Query: 141 LKIKGGQELKLVFPQV 156 + ++ V Sbjct: 163 TVFRRMNDVDFPVADV 178 >gi|282165499|ref|YP_003357884.1| putative anaerobic ribonucleoside-triphosphate reductase-activating protein [Methanocella paludicola SANAE] gi|282157813|dbj|BAI62901.1| putative anaerobic ribonucleoside-triphosphate reductase-activating protein [Methanocella paludicola SANAE] Length = 255 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 19/96 (19%) Query: 31 GCNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 GC L +C +C + F+ + + + + + + + Sbjct: 28 GCPL-----------KCPYCSNSRFIEVPEDIQASDT-----ETVNARVLEASRFVDGVI 71 Query: 90 LTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123 +GGEP +Q + + + G + V TNG Sbjct: 72 FSGGEPFMQPAALREMAEYVKGLGLLVGVHTNGAYP 107 >gi|227496402|ref|ZP_03926690.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Actinomyces urogenitalis DSM 15434] gi|226834087|gb|EEH66470.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Actinomyces urogenitalis DSM 15434] Length = 270 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 37/127 (29%), Gaps = 32/127 (25%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 VF GC C +C D V GT + E Sbjct: 57 TATVF--TQGCP-----------WNCFYCHNRDLIPVRTPGTVAWSQ--------VRELL 95 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQG-------IDW 130 VLTGGE L Q + + + GF + + T G +DW Sbjct: 96 GRRRGLLDGVVLTGGEALRQDALADAAAEVRELGFAVGLHTAGAYPRRLADLLEAGLVDW 155 Query: 131 ICVSPKA 137 + + KA Sbjct: 156 VGLDVKA 162 >gi|117924796|ref|YP_865413.1| GTP cyclohydrolase subunit MoaA [Magnetococcus sp. MC-1] gi|167011814|sp|A0L7R4|MOAA_MAGSM RecName: Full=Molybdenum cofactor biosynthesis protein A gi|117608552|gb|ABK44007.1| GTP cyclohydrolase subunit MoaA [Magnetococcus sp. MC-1] Length = 326 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 9/83 (10%) Query: 46 QCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-L 103 +C +C + ++ + +L+ L+ G R LTGGEPL++ D+ L Sbjct: 25 RCNYC--RVPEQESQLREQWLSFAELSRLLARFAQLGIGRFR---LTGGEPLVRKDLAQL 79 Query: 104 IQALNK-RGF-EIAVETNGTIEP 124 + L++ G EI++ TNG + P Sbjct: 80 VAGLHQLAGVEEISLSTNGLLLP 102 >gi|332036928|gb|EGI73388.1| molybdenum cofactor biosynthesis protein A [Pseudoalteromonas haloplanktis ANT/505] Length = 323 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 22/107 (20%) Query: 33 NLWSGREQDRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 N D + C +C DT N ++++ L+ G K+ Sbjct: 11 NYLRLSITDVCNFSCSYCLPNGYQCDTPRNF--------LNKNEISTLVNAFAQLGTKKV 62 Query: 86 RYCVLTGGEPLLQVDVPLIQALNKR--GFE-IAVETNGTIEPPQGID 129 R +TGGEP L+ DV I L K G E +A+ TNG + ID Sbjct: 63 R---ITGGEPCLRNDVTDIIKLCKNTPGIEKVAITTNG-FNLLKKID 105 >gi|126466217|ref|YP_001041326.1| radical SAM domain-containing protein [Staphylothermus marinus F1] gi|126015040|gb|ABN70418.1| Radical SAM domain protein [Staphylothermus marinus F1] Length = 347 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 5/102 (4%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY--NVDQLADLIEEQWITGEKEGRYCVL 90 N+ R C FC D + + + D + + E + Sbjct: 38 NVLQVRPTTLCPLNCIFCSVDAGPHSRNRRAEFIVDPDSIYEATIEIARFKGGGVEALID 97 Query: 91 TGGEPLLQV-DVPLIQALNKRGF--EIAVETNGTIEPPQGID 129 T G+PL L++ L + + IA+ET+G + + ID Sbjct: 98 TVGDPLTYPYLTYLVKKLKRSPYISSIALETHGALLSHRLID 139 >gi|221133421|ref|ZP_03559726.1| pyrroloquinoline quinone biosynthesis protein PqqE [Glaciecola sp. HTCC2999] Length = 377 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 20/169 (11%) Query: 33 NLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E C +C + + + + ++ E G + + + Sbjct: 14 PLWLLAELTYDCPLHCPYCSNPVQMTE--RKDECDTETWKKVLSEAREMGAVQLGF---S 68 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 GGEPLL+ D+ L+ ++ GF + T+G I ++ K LK G ++ Sbjct: 69 GGEPLLRKDLEVLVAHASELGFYTNLITSG----------IGLTEKRIKGLKEAGLDHIQ 118 Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFL--EENTNLAISYCFQNPK 197 L F N + IG + Q + L + + + +++C Sbjct: 119 LSFQAANADENDLIG-NKRHSFEQKLAVAKLVKQYDYPMVLNFCLTRQN 166 >gi|78357617|ref|YP_389066.1| Elongator protein 3/MiaB/NifB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220022|gb|ABB39371.1| Elongator protein 3/MiaB/NifB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 394 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 8/92 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 + R + +C C + + + +Q ++I + + + + Sbjct: 40 PVVVWNMTRRCNLKCVHC---YAQAVDPEGNDEISTEQGKEIIRDL---AQYGAPVMLFS 93 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPL++ D+ L + ++G + TNGT+ Sbjct: 94 GGEPLVRKDLVELAKFATEQGMRAVISTNGTL 125 >gi|14520684|ref|NP_126159.1| tRNA-modifying enzyme [Pyrococcus abyssi GE5] gi|5457900|emb|CAB49390.1| Radical SAM family protein [Pyrococcus abyssi GE5] Length = 342 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 GEP+L + L++ +KRGF + TNGT+ Sbjct: 151 GEPMLYPYMGDLVEEFHKRGFTTFIVTNGTVP 182 >gi|87307927|ref|ZP_01090070.1| MoaA/NifB/PqqE family protein [Blastopirellula marina DSM 3645] gi|87289541|gb|EAQ81432.1| MoaA/NifB/PqqE family protein [Blastopirellula marina DSM 3645] Length = 490 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 15/103 (14%) Query: 31 GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GC L G + C C + G G G +V Q I+ + Sbjct: 72 GCPLDCGLCTEHEQHSCIGLLEITSSCNLECPMCYAGS-GPGGKHLSVAQCQAAIDRL-V 129 Query: 80 TGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG 120 E L+GGEP + D L AL++ + + TNG Sbjct: 130 EVEGRPEVLQLSGGEPTIHPDFETILAYALSQPIDYVMINTNG 172 >gi|225593178|gb|ACN96095.1| Fe-S protein, radical SAM family [Fischerella sp. MV11] Length = 476 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 22/111 (19%) Query: 31 GCNLWSGREQDRLSAQCR----------------FCDT---DFVGIQGTKGGRYNVDQLA 71 GC G D C + D+ +F + ++ ++A Sbjct: 80 GCPYDCGLCPDHEQHSCLTLIEVTDRCNLSCPICYADSGAEEFSQVSHQPRRHRSLAEIA 139 Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETNG 120 +I+ +T E E + L+GGEP + + ++ + + + TNG Sbjct: 140 SMIDAV-VTNEGEPQIVQLSGGEPTIHPEFFEIMDLAKSKPIKHLMINTNG 189 >gi|238760074|ref|ZP_04621224.1| pyruvate formate-lyase 3-activating enzyme [Yersinia aldovae ATCC 35236] gi|238701693|gb|EEP94260.1| pyruvate formate-lyase 3-activating enzyme [Yersinia aldovae ATCC 35236] Length = 299 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Query: 88 CVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 L+GGEP +Q D+ L+Q ++ G AVE+ Sbjct: 127 VTLSGGEPFMQPDIAAELLQRCHRLGIHTAVES 159 >gi|261339237|ref|ZP_05967095.1| hypothetical protein ENTCAN_05472 [Enterobacter cancerogenus ATCC 35316] gi|288319093|gb|EFC58031.1| pyruvate formate-lyase 1-activating enzyme [Enterobacter cancerogenus ATCC 35316] Length = 246 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K G ++TNG Sbjct: 72 GGVTASGGEAILQAEFVRDWFRACRKEGIHTCLDTNG 108 >gi|171058132|ref|YP_001790481.1| radical SAM domain-containing protein [Leptothrix cholodnii SP-6] gi|170775577|gb|ACB33716.1| Radical SAM domain protein [Leptothrix cholodnii SP-6] Length = 418 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 16/112 (14%) Query: 33 NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 + R + C+ C + G + ++ ++++ +L+ Sbjct: 35 PVVIWNLIRRCNLTCQHC---YALSADHEYSGELSGAEVGTVMDDLKA---FHVPVLILS 88 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI--------EPPQGIDWICVS 134 GGEPL++ D+ + F I + TNGT+ G D++ +S Sbjct: 89 GGEPLMRPDIFEIAARAKAMRFYIGLSTNGTLIDEPMADRVAAAGFDYVGIS 140 >gi|326402367|ref|YP_004282448.1| hypothetical protein ACMV_02190 [Acidiphilium multivorum AIU301] gi|325049228|dbj|BAJ79566.1| hypothetical protein ACMV_02190 [Acidiphilium multivorum AIU301] Length = 579 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 14/89 (15%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL S + D + G R +D+ A+ E G LT Sbjct: 309 CNLACEGCYIESSPRN-----DRLAWLRLDGFRRVLDEAANRHPELREIG--------LT 355 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETN 119 GGEP + D+ LI RG+ + V TN Sbjct: 356 GGEPFMNPDIEALIGMALDRGYRVLVLTN 384 >gi|238922271|ref|YP_002935785.1| pyruvate formate lyase activating enzyme [Eubacterium eligens ATCC 27750] gi|238873943|gb|ACR73651.1| pyruvate formate lyase activating enzyme [Eubacterium eligens ATCC 27750] Length = 259 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 22/117 (18%) Query: 7 KEIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 E F ++ G G + VF GC++ +CR+C + G Sbjct: 18 VESFGSVDGPGVRYI----VF--LKGCHM-----------RCRYCHNPETWKE-EGGTLE 59 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 ++ D + K G ++GGE LLQ+ L + K G ++T+G Sbjct: 60 TAQEVFDKAYR-YRNYWKNGGGITVSGGEALLQMGFVTELFEIAKKNGVHTTLDTSG 115 >gi|326797578|ref|YP_004315397.1| molybdenum cofactor biosynthesis protein A [Sphingobacterium sp. 21] gi|326548342|gb|ADZ76727.1| molybdenum cofactor biosynthesis protein A [Sphingobacterium sp. 21] Length = 329 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 10/92 (10%) Query: 33 NLWSGREQDRLSAQCRFC--DTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCV 89 N D + +C +C + + K + +DQLA + + +T + Sbjct: 14 NYLRISLTDNCNLRCFYCMPEEHYAFTPHAKLMQVHEIDQLAKIFVDHGVTKIR------ 67 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 LTGGEPL++ D P +I+ L+K E+ + TNG Sbjct: 68 LTGGEPLVRKDAPAIIEILSKLPVELTMTTNG 99 >gi|254468647|ref|ZP_05082053.1| coenzyme PQQ biosynthesis protein E [beta proteobacterium KB13] gi|207087457|gb|EDZ64740.1| coenzyme PQQ biosynthesis protein E [beta proteobacterium KB13] Length = 394 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 10/101 (9%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R C FC TD+ TK N D+ ++ + G + Sbjct: 17 PLWLLAEITYRCPLHCAFCYNPTDYA--DHTK-NELNTDEWIKVLGDARKMGALQLG--- 70 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGID 129 ++GGEPLL+ D+ ++ N+ G+ + T+G + ID Sbjct: 71 ISGGEPLLRDDIEDIVTEANQLGYYSNLITSGVGLTEKRID 111 >gi|299132405|ref|ZP_07025600.1| Radical SAM domain protein [Afipia sp. 1NLS2] gi|298592542|gb|EFI52742.1| Radical SAM domain protein [Afipia sp. 1NLS2] Length = 513 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 12/101 (11%) Query: 31 GCNLWSGREQDRLSAQCRF-------CDT--DFVGIQGTKGGRYNVDQLADLIEEQWITG 81 GC G D C CD G ++++ ++++ ++ Sbjct: 102 GCPHDCGLCPDHEQHACLGIIEVNSACDMNCPLCFADAAPGFSLTMEEVEQMLDD-YVRT 160 Query: 82 EKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFE-IAVETNG 120 E + +GGEP + + ++A R + + TNG Sbjct: 161 EGQPEVVQFSGGEPTVHPRIIDFVRAAYARDIRFVMLNTNG 201 >gi|238925096|ref|YP_002938613.1| hypothetical protein EUBREC_2749 [Eubacterium rectale ATCC 33656] gi|238876772|gb|ACR76479.1| Hypothetical protein EUBREC_2749 [Eubacterium rectale ATCC 33656] Length = 296 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 13/98 (13%) Query: 33 NLWSGREQDRLSAQCRF---------CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 N++ +D + Q + C T F GI+ + ++ + + + G + Sbjct: 10 NVFEDSMEDSILPQIVWHITDKCYLNCKTCFAGIKKETLEDMPISKVREYLLCMKLLGVQ 69 Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 + ++GGEPLL D+ L+ ++GF + + T G Sbjct: 70 K---IDISGGEPLLYKDLSILVNECIRQGFYVTITTRG 104 >gi|269119695|ref|YP_003307872.1| glycyl-radical enzyme activating protein family [Sebaldella termitidis ATCC 33386] gi|268613573|gb|ACZ07941.1| glycyl-radical enzyme activating protein family [Sebaldella termitidis ATCC 33386] Length = 298 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 + D++ D + + + + ++GGE L+ D LI+ + + A+ET+G Sbjct: 102 EKMTADEVFDEVMKDYPYYKNSNGGLTVSGGEVLMNSDFAYELIKKVKEEYISTAIETSG 161 >gi|194334897|ref|YP_002016757.1| radical SAM domain-containing protein [Prosthecochloris aestuarii DSM 271] gi|194312715|gb|ACF47110.1| Radical SAM domain protein [Prosthecochloris aestuarii DSM 271] Length = 548 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 18/98 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + ++ + + + L +I+ Y + Sbjct: 251 CNLTCEVCYTKNLSK---------NVNALSDELFLSEVLQPIIDS-------GVSYVTIL 294 Query: 92 GGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQG 127 GGEPLL+ D+ ++ L K + + TNGT+ + Sbjct: 295 GGEPLLKKDLLYEVVCRLRKNNIYVKIITNGTLIISKD 332 >gi|65319439|ref|ZP_00392398.1| COG2896: Molybdenum cofactor biosynthesis enzyme [Bacillus anthracis str. A2012] Length = 337 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D F+ + D++ L G + R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPDYAFLQEEC----LLTFDEIERLARLFISMGVNKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQALNK-RG-FEIAVETNG 120 GEPLL+ D+P LI L K G +I + TNG Sbjct: 75 GEPLLRKDLPKLIARLAKLEGXKDIGLTTNG 105 >gi|256372616|ref|YP_003110440.1| molybdenum cofactor biosynthesis protein A [Acidimicrobium ferrooxidans DSM 10331] gi|256009200|gb|ACU54767.1| molybdenum cofactor biosynthesis protein A [Acidimicrobium ferrooxidans DSM 10331] Length = 335 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 9/99 (9%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + +G + +++ + + + + +TGGEP ++ Sbjct: 24 DRCNFRCTYCMPEEGMHWLDRGELLSFEEITRI--ARVMATAFRLQSVRITGGEPTVRAQ 81 Query: 101 VP-LIQALNK------RGFEIAVETNGTIEPPQGIDWIC 132 VP LI+ L + G E+++ TNG D + Sbjct: 82 VPSLIEQLAQVRRPDGTGLELSMTTNGATFALLADDLVS 120 >gi|229124961|ref|ZP_04254135.1| Radical SAM domain protein [Bacillus cereus 95/8201] gi|228658462|gb|EEL14128.1| Radical SAM domain protein [Bacillus cereus 95/8201] Length = 259 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 4/57 (7%) Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 ++ A +++ + + GEPLL + L+ ++GF++ + TNGT+ Sbjct: 1 MEDFAKRLDQIKPHTDYIYLHVK---GEPLLHPKIDQLLDLSYEKGFKVNITTNGTL 54 >gi|182412773|ref|YP_001817839.1| molybdenum cofactor biosynthesis protein A [Opitutus terrae PB90-1] gi|177839987|gb|ACB74239.1| molybdenum cofactor biosynthesis protein A [Opitutus terrae PB90-1] Length = 338 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 19/109 (17%) Query: 41 DRLSAQCRFCDTDFVGIQG----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 DR + +C +C V + ++ ++ G + R LTGGEPL Sbjct: 21 DRCNFRCPYCMPKEVFGPAHAFLRDPQLMSQAEITRIVRAFQQLGVTKVR---LTGGEPL 77 Query: 97 LQVDVP-LIQALNKRGFEI---AVETNG----TIEPP---QGIDWICVS 134 L+ DVP L+++L + + A+ TNG P G+D + VS Sbjct: 78 LRADVPDLVRSLKQE-LRVPDLALTTNGWLLEKYAPSLREAGLDRVNVS 125 >gi|126458921|ref|YP_001055199.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|126248642|gb|ABO07733.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548] Length = 363 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 9/101 (8%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103 S C +C Q +Y + +EE ++ GG+P QV L Sbjct: 147 SLDCLYC-------QNWHYRKYPRRPVFASVEELDRAMDRRVSCVCFFGGDPAPQVVHAL 199 Query: 104 I--QALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 + + ++G + ET+G + P + +S K G +K Sbjct: 200 LVAKRAAEKGVRVCWETSGQLAPHLLDKVVEISLKTGGIVK 240 >gi|293400765|ref|ZP_06644910.1| putative pyruvate formate-lyase activating enzyme [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305791|gb|EFE47035.1| putative pyruvate formate-lyase activating enzyme [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 281 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 7/117 (5%) Query: 32 CNLWSGR----EQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 C + + S +C CDT + + +L+ EQ + R Sbjct: 57 CPTDALTLEAGKVLWNSEKCVDCDTCIHTCTHLASPKIRYMSVEELV-EQIKAKKAFLRG 115 Query: 88 CVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 ++GGE + + L + + K G +++NG + Q + V D+K Sbjct: 116 ITVSGGECMNHAAFLLDLFKEVKKLGLTCLIDSNGYYDFSQYPQLMAVCDGVMLDVK 172 >gi|255530735|ref|YP_003091107.1| Radical SAM domain-containing protein [Pedobacter heparinus DSM 2366] gi|255343719|gb|ACU03045.1| Radical SAM domain protein [Pedobacter heparinus DSM 2366] Length = 463 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 12/82 (14%) Query: 31 GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G D C C T + G +++++ + + + + Sbjct: 80 GCPYDCGLCTDHEQHSCLTIIEVTDRCNLSCPTCYAMSSPNYGRHRSLEEI-NKMMDVVV 138 Query: 80 TGEKEGRYCVLTGGEPLLQVDV 101 E E L+GGEP + D Sbjct: 139 ANEGEPDVVQLSGGEPTVHPDF 160 >gi|83596383|gb|ABC25540.1| glycerol dehydratase activator [Roseburia inulinivorans DSM 16841] Length = 264 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 27/112 (24%) Query: 21 GRVA-VFCRFSGCNLWSGREQDRLSAQCRFC----------DTDFVGIQGTKGGR-YNVD 68 G VF GC + +CR+C +T + + G+ V Sbjct: 24 GVRTIVF--LKGC-----------ALRCRWCCNPESQSFEVETMTINGKPKVMGKDVTVA 70 Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118 ++ +E + G L+GGE LQ + L++A G A+E+ Sbjct: 71 EVMKTVERDMPYYLQSGGGITLSGGECTLQPEFSLGLLRAAKDLGISTAIES 122 >gi|327440285|dbj|BAK16650.1| predicted Fe-S oxidoreductase [Solibacillus silvestris StLB046] Length = 367 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 12/84 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99 +C C + + D++ ++E R TGGEPLL Sbjct: 39 RCSHCAVGYTLLTKELPA-IPADEIIRKLDEVETL-----RTMSFTGGEPLLTKKGIKDN 92 Query: 100 DVPLIQALNKRGFEIAVETNGTIE 123 +PL++ RG + + +N T+ Sbjct: 93 LLPLLKYAKSRGIKTQINSNLTLP 116 >gi|295697188|ref|YP_003590426.1| molybdenum cofactor biosynthesis protein A [Bacillus tusciae DSM 2912] gi|295412790|gb|ADG07282.1| molybdenum cofactor biosynthesis protein A [Bacillus tusciae DSM 2912] Length = 344 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C +++ ++ G K R +TGGEPL++ D Sbjct: 33 DRCNLRCLYCMPAHGVQFMESRRLMTYEEIVTVVRVAARLGVKRLR---ITGGEPLVRPD 89 Query: 101 VP-LIQAL 107 + LI+AL Sbjct: 90 IDRLIEAL 97 >gi|85813924|emb|CAF31553.1| putative fortimicin biosynthetic oxidoreductase [Micromonospora olivasterospora] Length = 262 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Query: 50 CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQAL 107 CD V + R + D++ + E W G R+ +GGE L +I Sbjct: 30 CDHCIVESSPRRRERLSTDEVRATLSEAWENGR---RHVTFSGGEVFLYPREMREVITWA 86 Query: 108 NKRGFEIAVETN 119 + G+ + VE+N Sbjct: 87 RELGYVVDVESN 98 >gi|110639435|ref|YP_679644.1| radical SAM family Fe-S oxidoreductase [Cytophaga hutchinsonii ATCC 33406] gi|110282116|gb|ABG60302.1| Fe-S oxidoreductase, radical SAM superfamily [Cytophaga hutchinsonii ATCC 33406] Length = 326 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 12/94 (12%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN + R +A C FCD I + + + + G + T Sbjct: 10 CNYYVTY---RCNATCGFCD-----IWEKPSPYVTPEAVEQNMRDLKKLG---VKVIDFT 58 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124 GGEPLL ++ L++ K G + TN + P Sbjct: 59 GGEPLLHREMDTLLRIAKKYGMITTLTTNALLYP 92 >gi|291302732|ref|YP_003514010.1| Radical SAM domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290571952|gb|ADD44917.1| Radical SAM domain protein [Stackebrandtia nassauensis DSM 44728] Length = 184 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 26/82 (31%), Gaps = 19/82 (23%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 F GC S C C T G +A+L ++ Sbjct: 27 FQGC-----------SLACPGC-----FNPETHGPDAEELSVAELAGRVLARADRWEG-I 69 Query: 89 VLTGGEPLLQVDVPLIQALNKR 110 LTGGEPL Q + L +R Sbjct: 70 TLTGGEPLQQP--EAVAELCRR 89 >gi|224368537|ref|YP_002602700.1| MoaA1 [Desulfobacterium autotrophicum HRM2] gi|223691253|gb|ACN14536.1| MoaA1 [Desulfobacterium autotrophicum HRM2] Length = 329 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 22/171 (12%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +C +C D + + +++ +++ G + R +TG Sbjct: 14 NYLRVSITDRCNLRCLYCIPDGIFPMLSHEEILTYEEILRIVKTGSKMGISKVR---ITG 70 Query: 93 GEPLLQVDV-PLIQALNK-RG-FEIAVETNGTIEPP-------QGIDWICVS-----PKA 137 GEPL++ + L+K +G +I++ TNG + GI I VS PK Sbjct: 71 GEPLVRKGACDFLSRLSKIKGLLDISLTTNGVLLEKNIEQIKAAGIHRINVSLDTLQPKK 130 Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 I K V+ + + GF + ++ M G +E +LA Sbjct: 131 YKQ--ITRMNMFKRVWD--GIMAAHAAGFSPIKLNVVVMKGINDDEIEDLA 177 >gi|121534709|ref|ZP_01666530.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1] gi|121306729|gb|EAX47650.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1] Length = 390 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 17/96 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + ++ G T+ + +D LA + + + + Sbjct: 50 CNLSCQHCYISAEDR------EYAGELTTEEAKAFIDDLAAM----------KVPVLLFS 93 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 GGEPL++ D+ L RG + TNGT+ P Sbjct: 94 GGEPLVRPDLFELGAYARDRGIRPVISTNGTLITPA 129 >gi|294340261|emb|CAZ88633.1| putative Fe-S oxidoreductase [Thiomonas sp. 3As] Length = 465 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 10/92 (10%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPL 103 C +C + + + G VD + GGEPL+ + PL Sbjct: 77 ACSYC--NQASQRPAQEGAGRVDAFLATLATWLSVERHRAPTFEFWGGEPLVYWKLLQPL 134 Query: 104 IQALN----KRGFEIAVETNGTIEPPQGIDWI 131 +AL G + TNG + +DW+ Sbjct: 135 AEALRQRHPDAGLFLI--TNGALLDTAKVDWL 164 >gi|229172864|ref|ZP_04300418.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus MM3] gi|228610609|gb|EEK67877.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus MM3] Length = 337 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 14/89 (15%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C +D+ +Q +++ L G ++ R LTGGE Sbjct: 22 DRCNFRCTYCMPAEVFGSDYAFLQEEF--LLTFNEIERLARLFIGMGVEKIR---LTGGE 76 Query: 95 PLLQVDVP-LIQAL-NKRGFE-IAVETNG 120 PLL+ D+P LI L G + I + TNG Sbjct: 77 PLLRKDLPKLIARLTKLEGLKDIGLTTNG 105 >gi|253699656|ref|YP_003020845.1| radical SAM protein [Geobacter sp. M21] gi|251774506|gb|ACT17087.1| Radical SAM domain protein [Geobacter sp. M21] Length = 409 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 24/109 (22%) Query: 21 GRVAVFC--RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G +F R CN+ DT G + + A+ + Sbjct: 77 GWSCLFINGR---CNVSCFYCPTSQD------DTSHPQTNGIAFA--SPENYAEYVARFG 125 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKR-GFEIAV--ETNGTI 122 TG ++GGEPLL +D L + A+ +R G + + TNGT+ Sbjct: 126 FTGA------SISGGEPLLTLDRTLAYLDAVKRRCGDSVHLWMYTNGTL 168 >gi|73972793|ref|XP_538905.2| PREDICTED: similar to Molybdenum cofactor biosynthesis protein 1 B (MOCS1B) (Molybdenum cofactor synthesis-step 1 protein A-B) (Molybdenum cofactor biosynthesis protein C) [Canis familiaris] Length = 634 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + K +++ L G + R LT Sbjct: 80 CNL-----------RCQYCMPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 125 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GGEPL++ D V ++ L++ G I + TNG Sbjct: 126 GGEPLIRPDVVDIVAQLHQLEGLRTIGITTNG 157 >gi|148262099|ref|YP_001228805.1| radical SAM domain-containing protein [Geobacter uraniireducens Rf4] gi|146395599|gb|ABQ24232.1| Radical SAM domain protein [Geobacter uraniireducens Rf4] Length = 357 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 17/95 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL CR C ++ +G + ++ L++E + Sbjct: 15 TQKCNLKC--------VHCR-CSSEMTSSEGD----FTTEEGKKLLKE---IADFSKPVV 58 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 VL+GGEPL++ D+ L G + + +NG + Sbjct: 59 VLSGGEPLMRKDIFELAGYGTSLGLRMCMASNGAL 93 >gi|94311377|ref|YP_584587.1| molybdenum cofactor biosynthesis protein A [Cupriavidus metallidurans CH34] gi|93355229|gb|ABF09318.1| molybdopterin biosynthesis protein A [Cupriavidus metallidurans CH34] Length = 395 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 18/85 (21%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + + +++ G ++ R LTGGE Sbjct: 72 DRCNFRCVYCMPKEVFDKDYTFLPHS--ELLSFEEIERTARIFVSQGVEKIR---LTGGE 126 Query: 95 PLLQVDVP-LIQALNKRGFEIAVET 118 PLL+ ++ L++ L + +ET Sbjct: 127 PLLRKNIERLVEMLAR------IET 145 >gi|307824472|ref|ZP_07654697.1| molybdenum cofactor biosynthesis protein A [Methylobacter tundripaludum SV96] gi|307734456|gb|EFO05308.1| molybdenum cofactor biosynthesis protein A [Methylobacter tundripaludum SV96] Length = 334 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 17/89 (19%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C + T R V L ++ E + +TGGEPL++ Sbjct: 26 DRCDFRCLYC----MAEDMTFLPRAQVLTLEEIYTLAQAFAELGVKKIRITGGEPLVRKG 81 Query: 101 VPLIQALNKRGFEIAVE--------TNGT 121 ++ L G +E TNG+ Sbjct: 82 A--VELLQNIG---HIESLNELVITTNGS 105 >gi|269139528|ref|YP_003296229.1| pyruvate-formate lyase-activating enzyme [Edwardsiella tarda EIB202] gi|267985189|gb|ACY85018.1| pyruvate-formate lyase-activating enzyme [Edwardsiella tarda EIB202] gi|304559417|gb|ADM42081.1| Pyruvate formate-lyase activating enzyme [Edwardsiella tarda FL6-60] Length = 246 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V++L G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKDTVTYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A G ++TNG Sbjct: 72 GGVTASGGEAMLQAEFVRDWFRACQAEGIHTCLDTNG 108 >gi|255526789|ref|ZP_05393689.1| Radical SAM domain protein [Clostridium carboxidivorans P7] gi|296187941|ref|ZP_06856333.1| radical SAM domain protein [Clostridium carboxidivorans P7] gi|255509517|gb|EET85857.1| Radical SAM domain protein [Clostridium carboxidivorans P7] gi|296047067|gb|EFG86509.1| radical SAM domain protein [Clostridium carboxidivorans P7] Length = 457 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 22/117 (18%) Query: 31 GCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 GC G + R + +C+FC F K ++++ Sbjct: 75 GCPFDCGLCSEHRQHTCTALIEVTERCNLKCKFC---FADSYRDKKKDVPIEKI--RFMY 129 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNGTIEPPQGIDWI 131 + I ++GGEP L+ D+P +I+ GF+ I V TNG I Q D++ Sbjct: 130 ERILEASGACNIQISGGEPTLRDDLPQIIELGINLGFKFIQVNTNG-IRIAQDEDYV 185 >gi|222152350|ref|YP_002561525.1| pyruvate formate-lyase activating enzyme [Streptococcus uberis 0140J] gi|222113161|emb|CAR40596.1| putative pyruvate formate-lyase activating enzyme [Streptococcus uberis 0140J] Length = 257 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 32/112 (28%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCD-------------TDFVGIQGTKGGRYNVDQL 70 VF GC L +C +C T T G + V ++ Sbjct: 24 TVF--LKGCPL-----------RCPWCANPESQKKAPEEMLTADCKGHETVGEQKTVSEV 70 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVET 118 + + + E+ G L+GGE + P +A+ G A+ET Sbjct: 71 MEEVLKDRDFYEESGGGVTLSGGE--IFAQYPFAKAILKEAKANGLHTAIET 120 >gi|223938127|ref|ZP_03630024.1| hopanoid biosynthesis associated radical SAM protein HpnH [bacterium Ellin514] gi|223893171|gb|EEF59635.1| hopanoid biosynthesis associated radical SAM protein HpnH [bacterium Ellin514] Length = 471 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Query: 77 QWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI--CV 133 E + + GGEPL+ + L+ + K+G + + TNG + D++ Sbjct: 65 LGSAQECDAPMVSICGGEPLIYPKIEELVDGILKQGRIVYICTNGMFMRKKMRDYLAAAY 124 Query: 134 SP 135 SP Sbjct: 125 SP 126 >gi|170290611|ref|YP_001737427.1| tRNA-modifying enzyme [Candidatus Korarchaeum cryptofilum OPF8] gi|170174691|gb|ACB07744.1| Wyosine base formation domain protein [Candidatus Korarchaeum cryptofilum OPF8] Length = 325 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 29/105 (27%) Query: 47 CRFC------DTDFV--GIQGTKGGRYNVDQLAD-----------------LIEEQWITG 81 C +C D ++ +G + +++A+ + + W+ Sbjct: 73 CVYCWRLNASDVPMSQRWVEVPEGKWDDPEEIAEESVRVHRMLVQGYKGVRVFNKDWVRE 132 Query: 82 EKEGRY--CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 +E ++ LTG EP L + L++A +KRG + TNGT+ Sbjct: 133 AEEPKHAAISLTG-EPTLYPFIGGLVEAFSKRGMTTFIVTNGTMP 176 >gi|168214364|ref|ZP_02639989.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens CPE str. F4969] gi|170714163|gb|EDT26345.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens CPE str. F4969] Length = 331 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 10/85 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D+ + +C +C +D++ +++E G K+ R LTGGEPL++ Sbjct: 26 DKCNLRCAYCMEKDHNDFIQNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 82 Query: 101 VPLIQALNKRGFEIAVE-----TNG 120 V + + +E TNG Sbjct: 83 V--VDLIKNINKIPEIEEICLTTNG 105 >gi|332045258|gb|EGI81451.1| Radical SAM domain protein [Lacinutrix algicola 5H-3-7-4] Length = 463 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 56/162 (34%), Gaps = 28/162 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 C L DR + C C + G T G ++++ +++ + EKE ++ Sbjct: 96 C-LTVVEVTDRCNLTCPTC---YAGSSPTYGRHRTLEEIKTMLD-TIVANEKEPDVVQIS 150 Query: 92 GGEPLLQVDV-PLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEP + ++ + + TNG + + L Sbjct: 151 GGEPTIHPQFWEIMDYAKSLPIRHLMLNTNG----------------IKIAKNLAFAERL 194 Query: 150 KLVFPQVNVSPENYIGFD-FERFSLQPMDGPFLEENTNLAIS 190 K P E Y+ FD FE L+ + G L + AI Sbjct: 195 KTYAP----DFEIYLQFDSFENHVLRELRGADLNDIRKQAIK 232 >gi|307354625|ref|YP_003895676.1| Radical SAM domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307157858|gb|ADN37238.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571] Length = 343 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 8/98 (8%) Query: 33 NLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L G E + +CR C + + + DL ++ +E +T Sbjct: 7 PLIIGWELTLECNMRCRHCGS---TAGAKRPNELTTKEALDLCDQFPDLLVQE---VDIT 60 Query: 92 GGEPLLQVDVPLIQA-LNKRGFEIAVETNGTIEPPQGI 128 GGEPLL+ D +I L G + + TNG + + I Sbjct: 61 GGEPLLRKDWTIIAGHLQDLGIPVNILTNGLVMDSEMI 98 >gi|299136974|ref|ZP_07030157.1| coenzyme PQQ biosynthesis protein E [Acidobacterium sp. MP5ACTX8] gi|298601489|gb|EFI57644.1| coenzyme PQQ biosynthesis protein E [Acidobacterium sp. MP5ACTX8] Length = 361 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 6/80 (7%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R C +C + + + E+ G LTGGEPL + D+ Sbjct: 23 RCPLHCLYCSNPLELKRAE--EELSTADWKRVFEQAASLGILHLH---LTGGEPLARKDL 77 Query: 102 -PLIQALNKRGFEIAVETNG 120 LI ++ G + + T+G Sbjct: 78 AELIDTAHRAGLYVNMITSG 97 >gi|238920354|ref|YP_002933869.1| pyruvate formate lyase-activating enzyme 1 [Edwardsiella ictaluri 93-146] gi|238869923|gb|ACR69634.1| pyruvate formate-lyase 1-activating enzyme, putative [Edwardsiella ictaluri 93-146] Length = 246 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V++L G Sbjct: 27 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKDTVTYRHFMNASG 71 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A G ++TNG Sbjct: 72 GGVTASGGEAMLQAEFVRDWFRACQAEGIHTCLDTNG 108 >gi|296131888|ref|YP_003639135.1| Radical SAM domain protein [Thermincola sp. JR] gi|296030466|gb|ADG81234.1| Radical SAM domain protein [Thermincola potens JR] Length = 299 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 82 EKEGRYCVLTGGEPLLQVD-----VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134 +K R + GGEPLL D L++ + F + V TNGT+ D I VS Sbjct: 66 KKGIRLLIFEGGEPLLWKDGSKTIHDLVREAKRYFFCVGVTTNGTLPLDVDTDIIWVS 123 >gi|229058399|ref|ZP_04196783.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH603] gi|228719908|gb|EEL71498.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH603] Length = 307 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 21/110 (19%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-RGFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ +P LIQ LN+ G E I + Sbjct: 14 SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRKGLPELIQRLNEIEGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVSPKAGCDLKIKGGQELKLVFPQVNVS 159 TNG++ D + VS + E + + N S Sbjct: 71 TTNGSLLKKFAPDLYKAGLSRVTVS--------LDSLDEERFSYLNGNRS 112 >gi|218247631|ref|YP_002373002.1| hopanoid biosynthesis associated radical SAM protein HpnH [Cyanothece sp. PCC 8801] gi|257061034|ref|YP_003138922.1| hopanoid biosynthesis associated radical SAM protein HpnH [Cyanothece sp. PCC 8802] gi|218168109|gb|ACK66846.1| hopanoid biosynthesis associated radical SAM protein HpnH [Cyanothece sp. PCC 8801] gi|256591200|gb|ACV02087.1| hopanoid biosynthesis associated radical SAM protein HpnH [Cyanothece sp. PCC 8802] Length = 338 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 + GGEPLL + +++ L +R + + TN I + +D SP + Sbjct: 72 GAPVVSIPGGEPLLHPQIDEIVKGLVQRKKFVYLCTN-AILLEKSLDKFEPSPYLTFSVH 130 Query: 143 IKGGQE 148 + G +E Sbjct: 131 LDGLRE 136 >gi|37521648|ref|NP_925025.1| hypothetical protein gll2079 [Gloeobacter violaceus PCC 7421] gi|81709852|sp|Q7NIV3|RLMN_GLOVI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|35212646|dbj|BAC90020.1| gll2079 [Gloeobacter violaceus PCC 7421] Length = 348 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 60/181 (33%), Gaps = 27/181 (14%) Query: 15 GEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73 GE G A R + C Q CRFC T G G V ++ D Sbjct: 86 GETVETVGIPAA-ERLTVC----VSSQVGCPMACRFCATGQSGFARNLG----VHEIVDQ 136 Query: 74 IEEQWITGEKEGRYCVLTG-GEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132 + + + V G GEPLL ++QAL +I + G I Sbjct: 137 VLTVQEGFGRRVSHVVFMGMGEPLL-NLGAVVQALRVLNGDIGI----------GQRQIT 185 Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF-LEENTNLAISY 191 VS G +I+ KL Q+ ++ + R L P + +EE Y Sbjct: 186 VS-TVGVPGQIRRLGTYKL---QITLAVSLHAPNQDLRLKLIPTAQHYPIEELLEDCRDY 241 Query: 192 C 192 Sbjct: 242 V 242 >gi|114566230|ref|YP_753384.1| metallo cofactor biosynthesis protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337165|gb|ABI68013.1| metallo cofactor biosynthesis protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 390 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 8/92 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +R + +C+ C ++ + K + ++ ++I + + + + Sbjct: 40 PLVVWNMTNRCNLRCKHC---YIEAEDRKYQDELSTEEAREMINDL---AAMKVPVLLFS 93 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122 GGEPL+ Q L Q ++G + TNGT+ Sbjct: 94 GGEPLIRQDIFELGQMAAEKGLRPVISTNGTL 125 >gi|228990948|ref|ZP_04150911.1| Molybdenum cofactor biosynthesis protein A [Bacillus pseudomycoides DSM 12442] gi|228768728|gb|EEM17328.1| Molybdenum cofactor biosynthesis protein A [Bacillus pseudomycoides DSM 12442] Length = 307 Score = 40.0 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 21/110 (19%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ ++P LI+ LNK G E I + Sbjct: 14 SNDKILSFDEIERIARIFVSLGVRKLR---ITGGEPLLRKNLPELIERLNKIDGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVSPKAGCDLKIKGGQELKLVFPQVNVS 159 TNG++ D + VS + E + + N S Sbjct: 71 TTNGSLLKKFAPDLYKAGLSRVTVS--------LDSLDEERFSYLNGNRS 112 >gi|229004686|ref|ZP_04162423.1| Molybdenum cofactor biosynthesis protein A [Bacillus mycoides Rock1-4] gi|228756574|gb|EEM05882.1| Molybdenum cofactor biosynthesis protein A [Bacillus mycoides Rock1-4] Length = 307 Score = 40.0 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 21/110 (19%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ ++P LI+ LNK G E I + Sbjct: 14 SNDKILSFDEIERIARIFVSLGVRKLR---ITGGEPLLRKNLPELIERLNKIDGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVSPKAGCDLKIKGGQELKLVFPQVNVS 159 TNG++ D + VS + E + + N S Sbjct: 71 TTNGSLLKKFAPDLYKAGLSRVTVS--------LDSLDEERFSYLNGNRS 112 >gi|262199584|ref|YP_003270793.1| radical SAM protein [Haliangium ochraceum DSM 14365] gi|262082931|gb|ACY18900.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365] Length = 189 Score = 40.0 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 30/87 (34%), Gaps = 25/87 (28%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC S C C DT G +D L D I Q E Sbjct: 26 FQGC-----------SLGCPGCFNPDT-----HERGGQAREIDDLVDEILAQGSAIEG-- 67 Query: 86 RYCVLTGGEPLLQV--DVPLIQALNKR 110 L+GGEP Q + L+QA+ R Sbjct: 68 --VTLSGGEPFEQPAAALALMQAVRAR 92 >gi|224024568|ref|ZP_03642934.1| hypothetical protein BACCOPRO_01294 [Bacteroides coprophilus DSM 18228] gi|224017790|gb|EEF75802.1| hypothetical protein BACCOPRO_01294 [Bacteroides coprophilus DSM 18228] Length = 365 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 3/80 (3%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R + C+ C +D +I+ + TGGEPL++ D+ Sbjct: 42 RCNIHCKHCGSDCKSTAEIPD--MPAADFLRVIDSLTPHVNPHEVNIIFTGGEPLVRKDL 99 Query: 102 PLI-QALNKRGFEIAVETNG 120 + QAL RG+ ++ TNG Sbjct: 100 EEVGQALYHRGYPWSMVTNG 119 >gi|157822765|ref|NP_001100351.1| molybdenum cofactor biosynthesis protein 1 [Rattus norvegicus] gi|149069512|gb|EDM18953.1| molybdenum cofactor synthesis 1 (predicted), isoform CRA_b [Rattus norvegicus] Length = 480 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR+C + K +++ L G + R LT Sbjct: 80 CNL-----------RCRYCMPEEGVSLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 125 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GGEPL++ D V ++ L++ G I V TNG Sbjct: 126 GGEPLIRPDVVDIVARLHQLEGLRTIGVTTNG 157 >gi|157163946|ref|YP_001467812.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Campylobacter concisus 13826] gi|112801727|gb|EAT99071.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Campylobacter concisus 13826] Length = 234 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 32/123 (26%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 F+GCN+ +C +C + G + ++ D ++ G+ G Sbjct: 35 FAGCNM-----------RCGYC---YNIEVVRSNGTISFSEVCDFLDR--RVGKLNG--I 76 Query: 89 VLTGGE----PLLQVDVPLIQALNKRGFEIAVETNGTI------EPPQG-IDWICVSPKA 137 V +GGE PL + L + + RGF + V+TNG+ +G ID+I + KA Sbjct: 77 VFSGGECTANPL---FLRLAREVKARGFSLKVDTNGSYRDVLKKAIDEGLIDYIALDFKA 133 Query: 138 GCD 140 + Sbjct: 134 PKE 136 >gi|323939033|gb|EGB35251.1| pflC protein [Escherichia coli E482] Length = 213 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 6/101 (5%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119 G ++D L + + I G L+GGE L+Q + +Q L G A+ET Sbjct: 16 GRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETA 75 Query: 120 GTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156 G + + + + DLKI + +K+ P+V Sbjct: 76 GDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 116 >gi|148729628|gb|ABR09216.1| PqqE [Enterobacter cloacae] Length = 193 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 6/80 (7%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R QC +C T+ + Q ++ + G + + +GGEPLL+ D+ Sbjct: 7 RCPLQCPYCSNPLDF--STQAQELSTAQWIEVFRQARAMGSVQLGF---SGGEPLLRKDL 61 Query: 102 P-LIQALNKRGFEIAVETNG 120 P LI A GF + T+G Sbjct: 62 PELIAAARGMGFYTNLITSG 81 >gi|293373267|ref|ZP_06619626.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f] gi|292631752|gb|EFF50371.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f] Length = 448 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 17/99 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C ++ T+ ++ LI + + Sbjct: 106 CNL-----------SCPHC---YMFSGKTERNELETQEIKKLISDFTKISNGTS--ITFS 149 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGID 129 GGEP ++ D +++ + G E+ + TNGT + I Sbjct: 150 GGEPTIRTDFEEIVRTAYEMGLEVKILTNGTQLSSERIT 188 >gi|225376083|ref|ZP_03753304.1| hypothetical protein ROSEINA2194_01720 [Roseburia inulinivorans DSM 16841] gi|225212103|gb|EEG94457.1| hypothetical protein ROSEINA2194_01720 [Roseburia inulinivorans DSM 16841] Length = 283 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 27/112 (24%) Query: 21 GRVA-VFCRFSGCNLWSGREQDRLSAQCRFC----------DTDFVGIQGTKGGR-YNVD 68 G VF GC + +CR+C +T + + G+ V Sbjct: 43 GVRTIVF--LKGC-----------ALRCRWCCNPESQSFEVETMTINGKPKVMGKDVTVA 89 Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118 ++ +E + G L+GGE LQ + L++A G A+E+ Sbjct: 90 EVMKTVERDMPYYLQSGGGITLSGGECTLQPEFSLGLLRAAKDLGISTAIES 141 >gi|155967348|gb|ABU41512.1| NirJ2 [Heliophilum fasciatum] Length = 330 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Query: 49 FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL 107 FCD + + ++ L++E G + + +GGEPL++ D+ L+Q Sbjct: 14 FCDHCYRDAGAKASEELSTEEGKSLLDEIAKAG---FKIMIFSGGEPLMRPDIVELVQHA 70 Query: 108 NKRGFEIAVETNGTI 122 G TNGT+ Sbjct: 71 TNLGLRSVFGTNGTL 85 >gi|150403505|ref|YP_001330799.1| molybdenum cofactor biosynthesis protein A [Methanococcus maripaludis C7] gi|189028688|sp|A6VJM2|MOAA_METM7 RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|150034535|gb|ABR66648.1| putative molybdenum cofactor biosynthesis protein A [Methanococcus maripaludis C7] Length = 298 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 28/119 (23%) Query: 28 RFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 R S CNL +C +C G G + D++ +++ E Sbjct: 13 RLSITPKCNL-----------KCFYC--HKEGRNEEHGKLMSADEIGKIVKSSL---EFG 56 Query: 85 GRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNGTI-------EPPQGIDWICVS 134 R ++GGEPLL+ D+P +I+ + + I++ TNG + G+D + VS Sbjct: 57 VRKIKISGGEPLLRTDLPEIIENIKDDQIKDISLTTNGILLEKYAQKLKDAGLDRVNVS 115 >gi|307326965|ref|ZP_07606156.1| coenzyme PQQ biosynthesis protein E [Streptomyces violaceusniger Tu 4113] gi|306887501|gb|EFN18496.1| coenzyme PQQ biosynthesis protein E [Streptomyces violaceusniger Tu 4113] Length = 368 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 17/91 (18%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GC L C +C ++ + + + +++ + G L Sbjct: 17 GCPL-----------HCPYCSNPLELVR--RSRELSTAEWTEVMRQAGEFGVVHTH---L 60 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 +GGEPLL+ D+ ++ A G + T+G Sbjct: 61 SGGEPLLRPDLAEIVIAAESAGIYTQLVTSG 91 >gi|156937252|ref|YP_001435048.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Ignicoccus hospitalis KIN4/I] gi|156566236|gb|ABU81641.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Ignicoccus hospitalis KIN4/I] Length = 241 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 38/118 (32%), Gaps = 26/118 (22%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL +C FC Q L + + + Y L Sbjct: 28 GCNL-----------KCPFC---HNWRQAEWMDCAPF--LEERFLNDLMESREFVDYVHL 71 Query: 91 TGGEPLLQVDVPLIQAL----NKRGFEIAVETNGT----IEPPQGIDWICVSPKAGCD 140 TGGEP LQ L++ + G ++ TN T +E + D + K Sbjct: 72 TGGEPTLQP--ELVKKISSLSKSNGVPFSLNTNCTTKQALELIRLADHVAFDVKVPFP 127 >gi|124027112|ref|YP_001012432.1| Fe-S oxidoreductase [Hyperthermus butylicus DSM 5456] gi|123977806|gb|ABM80087.1| predicted Fe-S oxidoreductase [Hyperthermus butylicus DSM 5456] Length = 373 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 11/89 (12%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LTG 92 LW + +CR+C F RY V++L +LIE + R V G Sbjct: 14 LWFVFTTGLCNLRCRYCGGGFPPDIVPPWPRYRVEELVELIERV------DSRPVVFFYG 67 Query: 93 GEPLLQVDV--PLIQALNKRGFEIAVETN 119 GEPLL ++ AL F I TN Sbjct: 68 GEPLLNPGFIREVMDALPHAVFGIQ--TN 94 >gi|303246271|ref|ZP_07332551.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ] gi|302492334|gb|EFL52206.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ] Length = 390 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 16/92 (17%) Query: 32 CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 CNL +CRFC T + ++++ + + + G + R Sbjct: 27 CNL-----------RCRFCYFQTRIEAKDHPEHPFMSLEKAIAIAD--TLRGHYDNRAID 73 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 + GGEP + + L + G + TNG Sbjct: 74 IQGGEPTIFPGIERLCEHCAGIGLTPTLITNG 105 >gi|296242740|ref|YP_003650227.1| radical SAM domain-containing protein [Thermosphaera aggregans DSM 11486] gi|296095324|gb|ADG91275.1| Radical SAM domain protein [Thermosphaera aggregans DSM 11486] Length = 378 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 22/91 (24%) Query: 30 SGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCN +C FC D + G R ++LA + E TG + + Sbjct: 165 GGCNF-----------KCAFCQNYDISQVSPRSGERVTPERLARIQESLRKTGARNINHV 213 Query: 89 VLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119 GGEP +P I L + +ETN Sbjct: 214 ---GGEPT--PHLPFI--LESLKY---LETN 234 >gi|115360443|ref|YP_777580.1| organic radical activating enzyme family protein [Burkholderia ambifaria AMMD] gi|115285771|gb|ABI91246.1| organic radical activating enzyme family protein [Burkholderia ambifaria AMMD] Length = 214 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 24/83 (28%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC + +C+ C DT GG VD + + Sbjct: 25 FQGC-----------TIRCQGCISMDT-----WANAGGETTVDAILAQVRTWLPESTG-- 66 Query: 86 RYCVLTGGEPLLQVDVPLIQALN 108 ++GGEP Q D LI L+ Sbjct: 67 --ITISGGEPFDQSD-ALIALLH 86 >gi|329945461|ref|ZP_08293205.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328528951|gb|EGF55889.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 253 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 45/156 (28%), Gaps = 39/156 (25%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC C +C Q R + + Sbjct: 36 TATVF--LQGCP-----------WNCFYC-----HNQALIPARTPGQVAWEEVRALLRRR 77 Query: 82 EKEGRYCVLTGGEPLLQVDVPLIQALN---KRGFEIAVETNGTIEP-------PQGIDWI 131 VLTGGE L Q L A + GF++ + T G +DW+ Sbjct: 78 RGLLDGVVLTGGEALRQD--ALADAAHEVIDMGFQVGLHTAGPYPRRLRDMIEAGFVDWV 135 Query: 132 CVSPKAGCDLK-IKGGQELKLVFPQVNVSPENYIGF 166 G D+K + E V + N + + + Sbjct: 136 ------GLDIKALPEHYE--QVVGRANAAAKAWESL 163 >gi|296331887|ref|ZP_06874352.1| putative Fe-S oxidoreductase, radical SAM superfamily protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673499|ref|YP_003865171.1| putative Fe-S oxidoreductase, radical SAM superfamily protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296150965|gb|EFG91849.1| putative Fe-S oxidoreductase, radical SAM superfamily protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411743|gb|ADM36862.1| putative Fe-S oxidoreductase, radical SAM superfamily protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 373 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 13/92 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L +EE R +TGGEP+L + Sbjct: 45 RCEHCAVGYT-LQPKDPNALPIDLLLKRLEEI-----PRLRSISITGGEPMLSLKSVKEY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 VPL++ ++RG + +N T++ +WI Sbjct: 99 VVPLLKYAHERGVRTQINSNLTLDI-DRYEWI 129 >gi|320352978|ref|YP_004194317.1| Radical SAM domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320121480|gb|ADW17026.1| Radical SAM domain protein [Desulfobulbus propionicus DSM 2032] Length = 350 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 16/92 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C + ++ +++ + ++ E VL+ Sbjct: 16 CNL-----------RCVHCRSS-SQLEIDGHPDFSLTEAKRVLNE---IHAYANPVVVLS 60 Query: 92 GGEPLLQVDVPLIQA-LNKRGFEIAVETNGTI 122 GGEPLL+ DV I A G I + TNG++ Sbjct: 61 GGEPLLRPDVFEIAAHGTSLGLRICLATNGSL 92 >gi|253700443|ref|YP_003021632.1| lysine 2,3-aminomutase YodO family protein [Geobacter sp. M21] gi|251775293|gb|ACT17874.1| lysine 2,3-aminomutase YodO family protein [Geobacter sp. M21] Length = 344 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 6/71 (8%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 CRFC + +G ++ D I +I G++ R VL+GG+PLL D L Sbjct: 107 CRFC----MRKRGVGCASMAPARVDDAIA--YIAGDQRIRDVVLSGGDPLLLPDDCLAGI 160 Query: 107 LNKRGFEIAVE 117 L+ VE Sbjct: 161 LSALSRIPHVE 171 >gi|149914618|ref|ZP_01903148.1| arginyl-tRNA-protein transferase [Roseobacter sp. AzwK-3b] gi|149811411|gb|EDM71246.1| arginyl-tRNA-protein transferase [Roseobacter sp. AzwK-3b] Length = 317 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119 D++ D +++ G R TGGEP + + + + +A +RG+E+ + TN Sbjct: 67 TADEVLDYLDQITERGW-PIREIGFTGGEPFMNPEMISMTRACLERGYEVLILTN 120 >gi|89093582|ref|ZP_01166530.1| molybdenum cofactor biosynthesis protein A [Oceanospirillum sp. MED92] gi|89082272|gb|EAR61496.1| molybdenum cofactor biosynthesis protein A [Oceanospirillum sp. MED92] Length = 334 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 13/96 (13%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R S DR +C +C +++++ + G K+ R Sbjct: 22 IRLS--------VTDRCDFRCVYC-MGEEMTFLPHAQVLSLEEIEQVAAAFVSLGVKKIR 72 Query: 87 YCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 LTGGEPL++ + + LI+ + + E+A+ TNG+ Sbjct: 73 ---LTGGEPLVRREVIKLIRGVGQLDAELAITTNGS 105 >gi|326391547|ref|ZP_08213079.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325992428|gb|EGD50888.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 453 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 20/105 (19%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C +C +T+ G + + + I+ + V Sbjct: 101 CNL-----------KCEYCIETEIQGFRRENMTNDTTKDIINWIQRKIDEKSYRILELVF 149 Query: 91 TGGEPLLQVDVPL-------IQALNKR-GFEIAVETNGTIEPPQG 127 GGEPLL D + L K F ++ TNGTIE Sbjct: 150 YGGEPLLNKDPIFQICNYFYNETLKKNLTFSFSIITNGTIELSDD 194 >gi|260425941|ref|ZP_05779920.1| radical SAM domain protein [Citreicella sp. SE45] gi|260420433|gb|EEX13684.1| radical SAM domain protein [Citreicella sp. SE45] Length = 490 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 39/136 (28%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLADLIEEQWITGEKEGRY 87 +GCNL C +C + +KG + + IE R Sbjct: 110 TGCNL-----------ACTYC---YKEDLAIPSKGEKMRFETAKASIELLLKQASGRDRI 155 Query: 88 -CVLTGGEPLLQVDVPLIQAL--------NKRGFEI--AVETNGTIEPPQGIDW------ 130 V GGEPL ++PLI+ + + G + ++ TN T+ + ++W Sbjct: 156 NVVFFGGEPL--SNMPLIREVVAYAEPRAAELGKVVDFSLTTNATLLTERMVEWFNAHRF 213 Query: 131 -ICVS---PKAGCDLK 142 + VS PKA D+ Sbjct: 214 ALTVSMDGPKALHDVN 229 >gi|254166649|ref|ZP_04873503.1| Wyosine base formation family [Aciduliprofundum boonei T469] gi|197624259|gb|EDY36820.1| Wyosine base formation family [Aciduliprofundum boonei T469] Length = 229 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 +E+ E LTG EP L + LI+ +KRGF + TNGT+ Sbjct: 33 LEKWKEAMEPRHVAISLTG-EPTLYPRLGELIEEYHKRGFTTFLVTNGTMP 82 >gi|160901857|ref|YP_001567438.1| molybdenum cofactor biosynthesis protein A [Petrotoga mobilis SJ95] gi|189028692|sp|A9BF51|MOAA_PETMO RecName: Full=Molybdenum cofactor biosynthesis protein A gi|160359501|gb|ABX31115.1| molybdenum cofactor biosynthesis protein A [Petrotoga mobilis SJ95] Length = 323 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 12/90 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QV 99 DR + +C +C T +++ ++E G K+ R +TGGEPL+ Q Sbjct: 18 DRCNLRCIYCMPPQGVTFKTHSSILRYEEIIKIVEVGTELGIKKVR---ITGGEPLVRQG 74 Query: 100 DVPLIQALNKRGFEIAVE-----TNGTIEP 124 V LI+ L K +E TNG + P Sbjct: 75 VVNLIKELRKIP---ELEDITMTTNGVLLP 101 >gi|256826835|ref|YP_003150794.1| molybdenum cofactor biosynthesis protein A [Cryptobacterium curtum DSM 15641] gi|256582978|gb|ACU94112.1| molybdenum cofactor biosynthesis protein A [Cryptobacterium curtum DSM 15641] Length = 337 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 12/88 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLL 97 DR + +C +C + + D + +++ + ++ + LTGGEPL+ Sbjct: 18 DRCNLRCVYC------MPADGILQVPHDTILRYDEIVRFVQVAAQRGVQRVRLTGGEPLV 71 Query: 98 QVDVP-LIQALNK-RGF-EIAVETNGTI 122 + V LI+ L+ G +I++ TNG + Sbjct: 72 RKGVAGLIERLSAIEGIDDISLTTNGVL 99 >gi|95928217|ref|ZP_01310965.1| Radical SAM [Desulfuromonas acetoxidans DSM 684] gi|95135488|gb|EAT17139.1| Radical SAM [Desulfuromonas acetoxidans DSM 684] Length = 369 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR C +D G + ++ +I++ E VL+ Sbjct: 21 CNLTC--------VHCR-CSSDMEAASGD----FTTEEAFKMIDDIC---EVSKPVMVLS 64 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPL++ D+ + + +G + + TNGT+ Sbjct: 65 GGEPLMRPDIFEIAEYGTSKGLRMCMATNGTL 96 >gi|108803860|ref|YP_643797.1| GTP cyclohydrolase subunit MoaA [Rubrobacter xylanophilus DSM 9941] gi|108765103|gb|ABG03985.1| GTP cyclohydrolase subunit MoaA [Rubrobacter xylanophilus DSM 9941] Length = 328 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 19/106 (17%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR + +C++C D F K ++++ E G + R +TGGEPL+ Sbjct: 21 DRCNFRCQYCMPEDIKFQ----DKSHILTLEEMLTFAEACLALGVTKVR---VTGGEPLV 73 Query: 98 QVD-VPLIQALNKRGF-EIAVETNGTI-------EPPQGIDWICVS 134 + V + L + GF E+ + TNG + G+D I +S Sbjct: 74 RRGVVKFVGWLKELGFDEVTMTTNGYLLKENLEGLVEAGLDRINIS 119 >gi|304438574|ref|ZP_07398513.1| possible Fe-S oxidoreductase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368412|gb|EFM22098.1| possible Fe-S oxidoreductase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 441 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 7/76 (9%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104 C C ++ + ++A L+ G G+ TGGE L+ D +I Sbjct: 108 NCNHC---YMNAGKKPDNELSTKEIASLLYNFNKMG---GKVVTFTGGEATLRDDFFEII 161 Query: 105 QALNKRGFEIAVETNG 120 + + GF + + TNG Sbjct: 162 KVAKEYGFTVCLLTNG 177 >gi|294789009|ref|ZP_06754249.1| molybdenum cofactor biosynthesis protein A [Simonsiella muelleri ATCC 29453] gi|294483111|gb|EFG30798.1| molybdenum cofactor biosynthesis protein A [Simonsiella muelleri ATCC 29453] Length = 324 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 22/170 (12%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D + +C +C + + + L ++ + + R LTGGEP L+ D Sbjct: 20 DLCNYRCNYC----LPNGYQGKAKPDELTLPEIETLVAVFAQNGTRKIRLTGGEPTLRAD 75 Query: 101 VPLIQALNKRGFEIA---VETN----GTIEP---PQGIDWICV---SPKAGCDLKIKGGQ 147 +P I A + EI + TN G + P G+D + V S + KI G Sbjct: 76 LPDIIAACRANPEIQHIALTTNAFKLGKLFPQYRVAGLDKLNVSIDSFQPETFHKITGKN 135 Query: 148 ELKLVFPQV-NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196 E + + + + + L +E+ AI + P Sbjct: 136 ECHHILNDLEQILADGFNNIKINTLLL----KEHIEQTLPDAIEFVKTRP 181 >gi|283768557|ref|ZP_06341469.1| pyruvate formate-lyase 1-activating enzyme [Bulleidia extructa W1219] gi|283104949|gb|EFC06321.1| pyruvate formate-lyase 1-activating enzyme [Bulleidia extructa W1219] Length = 243 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 25/103 (24%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWI 79 RF GC + +C +C + +G + +++ A + W Sbjct: 20 VRFIVFMQGCPM-----------RCLYCHNPETW-KFKQGMEMSAEEVFRKAIRYQSYWK 67 Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 G ++GGE L Q+D + L + +K ++T+G Sbjct: 68 NGGG----ITVSGGEALAQIDFLIELFEICHKHHIHTTLDTSG 106 >gi|152977087|ref|YP_001376604.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189028682|sp|A7GU01|MOAA_BACCN RecName: Full=Molybdenum cofactor biosynthesis protein A gi|152025839|gb|ABS23609.1| molybdenum cofactor biosynthesis protein A [Bacillus cytotoxicus NVH 391-98] Length = 337 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + +Q D++ L + G K+ R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPD--YAFLQEEF--LLTFDEIERLAKLFAGIGVKKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNG 120 GEPLL+ D+P LI+ L G I + TNG Sbjct: 75 GEPLLRKDLPKLIKRLASLDGITDIGLTTNG 105 >gi|224012289|ref|XP_002294797.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|224013668|ref|XP_002296498.1| pyruvate formate-lyase [Thalassiosira pseudonana CCMP1335] gi|220968850|gb|EED87194.1| pyruvate formate-lyase [Thalassiosira pseudonana CCMP1335] gi|220969236|gb|EED87577.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 247 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 36/185 (19%) Query: 21 GRVA-VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQ-GTKGGRYNVDQLADLIE 75 G VF GC S +C +C D + + +++ D+++ Sbjct: 16 GVRTLVF--LQGC-----------SKRCIYCSNPDAQCIVDPLKFPEVAISDEEVIDVLK 62 Query: 76 EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR------GFEIAVETNGTIEPPQGID 129 + +GG+PLLQ D + A+ ++ G ++T G P+ D Sbjct: 63 RYELFLSPNSGGVTFSGGDPLLQPD--FVNAVFEKAKDIGSGLTTCIDTAG-YGSPKIWD 119 Query: 130 WICVSPKAGCDLKIKGGQELKLVFPQVNVSP-ENYIGFDFERFSLQPMDGPFLEENTNLA 188 C+ P + G +LKL VS +N DF R +N L+ Sbjct: 120 -KCL-PNTDYVMLCIKGMDLKLASFISGVSKFQNECARDFARHI------RDHYKNIKLS 171 Query: 189 ISYCF 193 I + Sbjct: 172 IRWVL 176 >gi|319789832|ref|YP_004151465.1| molybdenum cofactor biosynthesis protein A [Thermovibrio ammonificans HB-1] gi|317114334|gb|ADU96824.1| molybdenum cofactor biosynthesis protein A [Thermovibrio ammonificans HB-1] Length = 323 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 4/78 (5%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +CR+C + V +++ ++++ G R LTG Sbjct: 5 NYLRVSVTDRCNFRCRYCMPEGVREFIPHKELLTYEEITEIVKTFAQFGVNSVR---LTG 61 Query: 93 GEPLLQVDVP-LIQALNK 109 GEPL++ V L+ L++ Sbjct: 62 GEPLIRQGVENLVSLLSE 79 >gi|253582853|ref|ZP_04860072.1| molybdenum cofactor biosynthesis protein A [Fusobacterium varium ATCC 27725] gi|251835287|gb|EES63829.1| molybdenum cofactor biosynthesis protein A [Fusobacterium varium ATCC 27725] Length = 325 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 12/86 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C++C ++ K V+++ ++ G K+ R LTGGEPL++ + Sbjct: 18 DRCNLRCQYCMSERNMNFLPKEELLTVEEIKRIVTIFSKIGIKKIR---LTGGEPLVRKN 74 Query: 101 -VPLIQALNKRGFEIAVE-----TNG 120 +++ L+ +E TNG Sbjct: 75 FTEILENLHSIK---NIEEISMTTNG 97 >gi|212225023|ref|YP_002308259.1| anaerobic ribonucleoside-triphosphate reductase activating enzyme [Thermococcus onnurineus NA1] gi|212009980|gb|ACJ17362.1| anaerobic ribonucleoside-triphosphate reductase activating enzyme [Thermococcus onnurineus NA1] Length = 237 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 18/93 (19%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCNL +C FC G + +++ A L E + + + + Sbjct: 24 LCGCNL-----------KCPFC---HNWRIAGGKGCFELERGAMLEELEVNSFLIDYFHV 69 Query: 89 VLTGGEPLLQ--VDVPLIQALNKRGFEIAVETN 119 TGGEPL+Q L+ ++ +++ TN Sbjct: 70 --TGGEPLMQWAELSSLLASVKALDVPVSLNTN 100 >gi|217032172|ref|ZP_03437671.1| hypothetical protein HPB128_186g38 [Helicobacter pylori B128] gi|216946162|gb|EEC24771.1| hypothetical protein HPB128_186g38 [Helicobacter pylori B128] Length = 269 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 55/162 (33%), Gaps = 31/162 (19%) Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIA--VETN 119 +D + + ++ G K+ R +TGGEPLL+ I L+ E+A + TN Sbjct: 13 ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDEFIAKLHAYNKEVALVLSTN 69 Query: 120 GTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169 G + D + V S K+ LKI LK + S + + Sbjct: 70 GFLLKKMAKDLKDAGLSRVNVSLDSLKSDRVLKISQKDALKNALEGIEESLKVGLKLKLN 129 Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211 M +E L + Y K I IR Sbjct: 130 TVV---MKSVNDDEILEL-LEYAKN-----------KHIQIR 156 >gi|158521236|ref|YP_001529106.1| radical SAM domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158510062|gb|ABW67029.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3] Length = 358 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 28/90 (31%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R SA C G G + + L+++ G+ +LT Sbjct: 29 CNLSC--RHCRASATC-----------GPYAGELDTEHSLQLLDQIAQVGK---PIIILT 72 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGT 121 GGEPLL+ D+ FEIA T+GT Sbjct: 73 GGEPLLRPDI----------FEIA--THGT 90 >gi|296114296|ref|ZP_06832950.1| pyrroloquinoline quinone biosynthesis protein PqqE [Gluconacetobacter hansenii ATCC 23769] gi|295979057|gb|EFG85781.1| pyrroloquinoline quinone biosynthesis protein PqqE [Gluconacetobacter hansenii ATCC 23769] Length = 360 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 6/88 (6%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R QC +C + Q D++++ G + + +GGEP+ + D+ Sbjct: 10 RCPLQCPYCSNPMAL--EPRANELTTTQWIDILDQAADLGVLQVHF---SGGEPMARPDL 64 Query: 102 P-LIQALNKRGFEIAVETNGTIEPPQGI 128 P LI+ RG + T+G + P Sbjct: 65 PDLIRHAVGRGLYTNLITSGVLMTPASF 92 >gi|284161695|ref|YP_003400318.1| radical SAM protein [Archaeoglobus profundus DSM 5631] gi|284011692|gb|ADB57645.1| Radical SAM domain protein [Archaeoglobus profundus DSM 5631] Length = 309 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 21/102 (20%) Query: 31 GCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLA----DLIEEQWITGEKEG 85 GCNL C +C + K + + L +++++++++ + Sbjct: 56 GCNLHCKY--------C-WCWKMRYHSEDIKKSPKDVLRDLECRFDEVVKDKFVSKKGYR 106 Query: 86 RYCV-LTGGEPLLQVD-----VPLIQALNK-RGFEIAVETNG 120 + +TG EP LQ D + LI + R F++ +ETNG Sbjct: 107 IGVIRITGNEPSLQWDHVKEVLKLIDRSERLRSFKVIIETNG 148 >gi|291288384|ref|YP_003505200.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290885544|gb|ADD69244.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 315 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 18/123 (14%) Query: 44 SAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDV 101 + C +C+ + R+ N D + E + + + +TG GEP L +D+ Sbjct: 35 TLNCIYCEVGRTTECTAERRRFENPDDILAEFRENYPHLKDDLDVVTITGAGEPTLNIDM 94 Query: 102 -PLIQALNKRG-FEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159 +I+ L + +AV TN T+ + + EL +V P ++ Sbjct: 95 GYIIKGLKEISEHPVAVLTNSTLLTDKNV--------------QAELMELDVVVPSLDAV 140 Query: 160 PEN 162 E Sbjct: 141 SEE 143 >gi|56476667|ref|YP_158256.1| quinohemoprotein amine dehydrogenase, putative SAM-radical dependentactivating subunit [Aromatoleum aromaticum EbN1] gi|56312710|emb|CAI07355.1| quinohemoprotein amine dehydrogenase, putative SAM-radical dependentactivating subunit [Aromatoleum aromaticum EbN1] Length = 480 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 25/113 (22%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR-YC 88 +GCNL C +C +KG + +++ +E G K R Sbjct: 113 TGCNL-----------SCTYCY-KEDLTTPSKGDKLSLETAKQGVELLLREGAKRDRVNV 160 Query: 89 VLTGGEPLLQVDVPLIQAL----------NKRGFEIAVETNGTIEPPQGIDWI 131 V GGEPL ++P+I+A+ +G ++++ TN T+ + +D+ Sbjct: 161 VFFGGEPL--TNMPVIRAVTAYAEQRCREEGKGLDLSLTTNATLLTEEIVDYF 211 >gi|266624938|ref|ZP_06117873.1| putative pyruvate formate-lyase activating enzyme [Clostridium hathewayi DSM 13479] gi|288863176|gb|EFC95474.1| putative pyruvate formate-lyase activating enzyme [Clostridium hathewayi DSM 13479] Length = 279 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 41/124 (33%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCD---------TDFV--GIQGTKGGRYNVDQLAD 72 VF GC S +C +C ++ G +G G Y+ +L Sbjct: 24 TVF--LKGC-----------SIRCPWCSNPENLEPAIQRYIKDGNEGLYGRWYSSAELYQ 70 Query: 73 LI---EEQWITGEKEGRY------------CVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115 + +E +I E + +GGE LLQ +++ L+ I Sbjct: 71 EVIRDKEFYIGDITEYKITDPMMLDKLPGGVTFSGGECLLQMSELEDVLRRLHSEKIHIT 130 Query: 116 VETN 119 +ET+ Sbjct: 131 IETS 134 >gi|260893438|ref|YP_003239535.1| molybdenum cofactor biosynthesis protein A [Ammonifex degensii KC4] gi|260865579|gb|ACX52685.1| molybdenum cofactor biosynthesis protein A [Ammonifex degensii KC4] Length = 316 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 70/183 (38%), Gaps = 31/183 (16%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +CR+C +++ +++ G ++ R LTG Sbjct: 4 NYLRVSVTDRCNLRCRYCLPPEGVKTVAHAEILRFEEIVRIVKAATRIGVRKVR---LTG 60 Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVE--------TNGTIEPPQGIDW-------ICVSPK 136 GEPL++ ++ L+ L +E TNG + Q + + VS Sbjct: 61 GEPLVRRNLSSLVAQLAA------IEEIDDLALTTNGILLAEQAKELAAAGLRRVNVSLD 114 Query: 137 AGCDLKIK---GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 + + G EL V+ + ++ E +G + + ++ + G +E LA S Sbjct: 115 TLDPQRYRFITRGGELTRVWEGIELALE--LGLEPVKLNVVVIKGFNEDELVRLA-SLSL 171 Query: 194 QNP 196 + P Sbjct: 172 ERP 174 >gi|253700450|ref|YP_003021639.1| radical SAM protein [Geobacter sp. M21] gi|251775300|gb|ACT17881.1| Radical SAM domain protein [Geobacter sp. M21] Length = 445 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 27/102 (26%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE-KEGRYCVL 90 CNL C +C +GG Y ADL+ E + +G L Sbjct: 93 CNL-----------DCGYC-----YEGEFRGGHYMSSATADLLVETLLRERISKGWDVTL 136 Query: 91 T--GGEPLLQVDV------PLIQALNKRG--FEIAVETNGTI 122 + GGEPLL D+ PL+QA G + + TNGT+ Sbjct: 137 SFYGGEPLLSQDLIGRISAPLLQAARDHGVKYGFNLVTNGTL 178 >gi|115954674|ref|XP_001192785.1| PREDICTED: similar to MGC84142 protein, partial [Strongylocentrotus purpuratus] Length = 258 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 13/112 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N +R + +C++C + K + +++ L + G + R LTG Sbjct: 65 NYLRISLTERCNLRCQYCMPEEGVTLSPKERLLSTEEILHLAKLFVSEGVDKIR---LTG 121 Query: 93 GEPLLQVDV-PLIQALNK-RGF-EIAVETNG-TIE------PPQGIDWICVS 134 GEPL++ D+ +I+ L + G +IA+ TNG T+ G+D I +S Sbjct: 122 GEPLVRKDIVEIIEGLRELEGLKQIAMTTNGVTLAKRLPALKKAGLDLINIS 173 >gi|320100217|ref|YP_004175809.1| Radical SAM domain-containing protein [Desulfurococcus mucosus DSM 2162] gi|319752569|gb|ADV64327.1| Radical SAM domain protein [Desulfurococcus mucosus DSM 2162] Length = 563 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 6/89 (6%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L + +R + C +C F +++Q+ ++ G LTGG Sbjct: 115 LVNMVVTNRCNLSCWYC--FFYSEAAGYVYEPSLEQIRGMVRSIKKQGVTVA--IQLTGG 170 Query: 94 EPLL-QVDVPLIQALNKRGFE-IAVETNG 120 EPLL + V +++ L + G I + TNG Sbjct: 171 EPLLREDLVDIVKLLREEGVRHIQLNTNG 199 >gi|312144555|ref|YP_003996001.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Halanaerobium sp. 'sapolanicus'] gi|311905206|gb|ADQ15647.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Halanaerobium sp. 'sapolanicus'] Length = 230 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 26/123 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF R GCN G + + + D ++++ + Sbjct: 22 VFTR--GCNFKCGYCHNSQLIN-----------NKAEKENMPEEIFFDFLDKRQGLIDG- 67 Query: 85 GRYCVLTGGEPLLQVDVP-LIQALN-KRGFEIAVETNGT-------IEPPQGIDWICVSP 135 V++GGEP LQ D+ I+ + K +I +++NG+ + ID++ V Sbjct: 68 ---VVISGGEPTLQPDLKNFIKKIKRKHNLKIKLDSNGSNQRTIAELIKEDLIDYLAVDI 124 Query: 136 KAG 138 K Sbjct: 125 KQS 127 >gi|197103746|ref|YP_002129123.1| molybdenum cofactor biosynthesis protein A [Phenylobacterium zucineum HLK1] gi|196477166|gb|ACG76694.1| molybdenum cofactor biosynthesis protein A [Phenylobacterium zucineum HLK1] Length = 341 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 20/149 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C K +++L + G ++ R LTGGEPL++ Sbjct: 31 DRCDLRCVYC-MAEHMTFLPKAQVLTLEELDRIASAFVALGVRKLR---LTGGEPLVRKG 86 Query: 101 V-PLIQAL---NKRGF--EIAVETNGT-------IEPPQGIDWICVS---PKAGCDLKIK 144 V LI+AL G E+ + TNGT G+ + VS K ++ Sbjct: 87 VMELIEALSRHLASGALSELTLTTNGTQLAGFAPRLAAAGVRRVNVSLDTLKPDLFRRLT 146 Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSL 173 G +L V + + + +L Sbjct: 147 RGGDLSKVLAGIEAAQAAGLSVKINAVAL 175 >gi|149375808|ref|ZP_01893576.1| pyrroloquinoline quinone biosynthesis protein PqqE [Marinobacter algicola DG893] gi|149359933|gb|EDM48389.1| pyrroloquinoline quinone biosynthesis protein PqqE [Marinobacter algicola DG893] Length = 384 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF Q ++ ++ + G + + Sbjct: 18 PLWLLAELTYRCPLQCPYCSNPLDFAQTQ----QELTTEEWTRVLRQGREMGAAQLGF-- 71 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 +GGEPL+ Q LI + G+ + T+G Sbjct: 72 -SGGEPLVRQDLPELIAEARQLGYYTNLITSG 102 >gi|332178834|gb|AEE14523.1| Radical SAM domain protein [Thermodesulfobium narugense DSM 14796] Length = 344 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 22/98 (22%) Query: 32 CNLWSGREQDRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 CNL +CR C T+ Y+ DLI E I + E Sbjct: 16 CNL-----------RCRHCYQENQKTELKFDDWENFFSYS----KDLIREWEIKYDIEIP 60 Query: 87 YCV-LTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 + + LTGGEP L+ D +++ LN+ E + TNGT+ Sbjct: 61 FLIKLTGGEPFLREDFFEIVKFLNEIDIEPYILTNGTL 98 >gi|261368993|ref|ZP_05981876.1| radical SAM domain protein [Subdoligranulum variabile DSM 15176] gi|282568859|gb|EFB74394.1| radical SAM domain protein [Subdoligranulum variabile DSM 15176] Length = 452 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 44/130 (33%), Gaps = 41/130 (31%) Query: 21 GRVAVFCR-------FSG------------CNLWSGREQDRLSA---QCRFCDTDFVGIQ 58 G F R G CN+ D SA C C Sbjct: 77 GVRQAFFRNFILNASLQGSARQEEVSARENCNVPWAILLDPTSACNMHCTGC------WA 130 Query: 59 GTKGGRYNV--DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116 G R N+ ++L ++ + G + TGGEPL++ + AL ++ + Sbjct: 131 AEYGNRLNLTFEELDSIVTQGKELGTYMY---IFTGGEPLVRKKD--VIALCEKHSDC-- 183 Query: 117 E----TNGTI 122 E TNGT+ Sbjct: 184 EFLSFTNGTL 193 >gi|146329598|ref|YP_001210199.1| pyruvate formate-lyase activating enzyme [Dichelobacter nodosus VCS1703A] gi|146233068|gb|ABQ14046.1| pyruvate formate-lyase activating enzyme [Dichelobacter nodosus VCS1703A] Length = 249 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 26/152 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C D+ + K V +L I+ G Sbjct: 28 FQGC-----------LMRCLYCHNRDSWPLTTD--KSEVTTVSKLMQEIKTYQHYLRASG 74 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGT-----IEPPQGIDWICVSPKAG 138 +GGEPLLQ A + ++TNG + + +D + Sbjct: 75 GGVTASGGEPLLQHAFIADWFTACQEMNLHTCLDTNGFARQYDHDLIRLLDHTDL---VM 131 Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 DLK ++ K++ N N+ + ER Sbjct: 132 LDLKQINPEKHKVLVGVPNDKTLNFARYLQER 163 >gi|26248881|ref|NP_754921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli CFT073] gi|227887552|ref|ZP_04005357.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972] gi|300981979|ref|ZP_07175825.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1] gi|301047150|ref|ZP_07194245.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1] gi|81475264|sp|Q8FF55|RLMN_ECOL6 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|26109287|gb|AAN81489.1|AE016764_171 Hypothetical protein yfgB [Escherichia coli CFT073] gi|227835902|gb|EEJ46368.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972] gi|300300936|gb|EFJ57321.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1] gi|300408874|gb|EFJ92412.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1] gi|307554540|gb|ADN47315.1| radical SAM enzyme [Escherichia coli ABU 83972] gi|315292442|gb|EFU51794.1| radical SAM enzyme, Cfr family [Escherichia coli MS 153-1] Length = 384 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL ++ VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N R L G + I Y Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYL----GKSNANQGRVTIEYVM 281 >gi|326204018|ref|ZP_08193879.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] gi|325985785|gb|EGD46620.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] Length = 471 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 32/116 (27%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGI------QGTKGGRYNVDQLADLIEEQWITGEKEG 85 CNL C++C F G + R +D+L + E + K+ Sbjct: 92 CNL-----------NCQYC---FAGGGNNYSGDRPEFDRERIDRLLHFVYEDYFKDYKKF 137 Query: 86 RYCVLTGGEPLLQVDVPLIQALNKRGFEI----------AVETNGTIEPPQGIDWI 131 R+ ++GGEPLL + I+ L +R EI + TNGT+ + ID++ Sbjct: 138 RFDFVSGGEPLL--NFEAIRYLVERVREIDGRKQSKSSFFLVTNGTLITDEIIDYL 191 >gi|256825735|ref|YP_003149695.1| GTP cyclohydrolase subunit MoaA [Kytococcus sedentarius DSM 20547] gi|256689128|gb|ACV06930.1| GTP cyclohydrolase subunit MoaA [Kytococcus sedentarius DSM 20547] Length = 333 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 15/89 (16%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV---LTGGEPLL 97 D+ + +C +C + D+L E + I LTGGEPLL Sbjct: 23 DKCNLRCTYC------LPAEGVPWMAKDELLSREELRAIAAVAVASGITEIRLTGGEPLL 76 Query: 98 QVDVP-LIQAL-----NKRGFEIAVETNG 120 + D+ L+ L E+++ TNG Sbjct: 77 RPDLEDLVADLASLEGEDGPVELSMTTNG 105 >gi|227514963|ref|ZP_03945012.1| molybdenum (Mo2+) cofactor biosynthesis enzyme [Lactobacillus fermentum ATCC 14931] gi|227086662|gb|EEI21974.1| molybdenum (Mo2+) cofactor biosynthesis enzyme [Lactobacillus fermentum ATCC 14931] Length = 332 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 8/84 (9%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C G+ R + D++ LI G + R +TGGEPLL+ Sbjct: 21 DRCNLRCVYC-MPKEGLPFFPTDRVLSQDEIVQLITNFAQLGVHKVR---ITGGEPLLRT 76 Query: 100 D-VPLIQALNKR-GFE-IAVETNG 120 D V +++ + + G E +++ TNG Sbjct: 77 DVVDIVRRIKEIDGIEDVSITTNG 100 >gi|158423054|ref|YP_001524346.1| molybdenum cofactor biosynthesis protein A [Azorhizobium caulinodans ORS 571] gi|158329943|dbj|BAF87428.1| molybdenum cofactor biosynthesis protein A [Azorhizobium caulinodans ORS 571] Length = 333 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 16/91 (17%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D FV + +++L L G + R LTGGEPL+ Sbjct: 23 DRCDLRCVYCMAEDMAFV----PRNQLLTLEELDRLASAFVARGVAKIR---LTGGEPLV 75 Query: 98 QV-DVPLIQAL-----NKRGFEIAVETNGTI 122 + + L+ +L +R E+ + TNG++ Sbjct: 76 RKGLMELVSSLSRHLAARRLKELTLTTNGSL 106 >gi|149909997|ref|ZP_01898646.1| putative pyruvate formate-lyase 1 activating enzyme [Moritella sp. PE36] gi|149807011|gb|EDM66970.1| putative pyruvate formate-lyase 1 activating enzyme [Moritella sp. PE36] Length = 258 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 39/120 (32%), Gaps = 27/120 (22%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G + VF GC +C +C D+ G Sbjct: 22 TESFGSVDGPGIRYI----VFM--QGC-----------LMRCLYCHNRDS----WDLHSG 60 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 VD+L + G +GGE +LQ + A G ++TNG Sbjct: 61 KDTTVDELIRELISYKAFMLATGGGVTASGGEAMLQPEFVRDFFTAAQAEGVNTCLDTNG 120 >gi|16554488|ref|NP_444212.1| Fe-S oxidoreductase involved in heme biosynthesis [Halobacterium sp. NRC-1] gi|169235985|ref|YP_001689185.1| coenzyme PQQ synthesis protein E [Halobacterium salinarum R1] gi|167727051|emb|CAP13836.1| homolog to coenzyme PQQ synthesis protein E [Halobacterium salinarum R1] Length = 401 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 27/97 (27%) Query: 32 CNLWSGREQDRLSAQCRFC----DTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGR 86 CNL+ C C DT+ + T G+ +D LAD Sbjct: 49 CNLY-----------CSHCYAAADTETAPGELSTAEGKALLDDLAD----------FGIP 87 Query: 87 YCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 + +GGEP+++ D+ LI + G + TNGT+ Sbjct: 88 VVLFSGGEPMVRDDLEELIAYADDNGIRPVLSTNGTL 124 >gi|17228226|ref|NP_484774.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Nostoc sp. PCC 7120] gi|17130076|dbj|BAB72688.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Nostoc sp. PCC 7120] Length = 207 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 20/96 (20%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 G AV GC +C C + + L+E+ I Sbjct: 35 GCRAV-VWVQGCP-----------RECPGC----FNPDSWTFEINQLVSVDSLVEQ--IL 76 Query: 81 GEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114 + + + +GGEP Q L + L G + Sbjct: 77 SKPQNQGVTFSGGEPFHQAIALAELARKLKAAGLSV 112 >gi|319400639|gb|EFV88864.1| molybdenum cofactor biosynthesis protein A [Staphylococcus epidermidis FRI909] Length = 340 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 24/94 (25%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D D+ + K ++L + + G K+ R +TGG Sbjct: 22 DRCNFRCDYCMPKEIFGD-DYTFL--PKDELLTFEELTRISKIYAQLGVKKIR---ITGG 75 Query: 94 EPLLQVD-------VPLIQALNKRGFEIAVETNG 120 EPLL+ + + LI + G TNG Sbjct: 76 EPLLRRNLYKLIEQLNLIDGIEDIGLT----TNG 105 >gi|320108498|ref|YP_004184088.1| Radical SAM domain-containing protein [Terriglobus saanensis SP1PR4] gi|319927019|gb|ADV84094.1| Radical SAM domain protein [Terriglobus saanensis SP1PR4] Length = 352 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 27/143 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C + + ++ G ++ Sbjct: 55 CNL-----------ACTYC--------NEYDDHSDPTPIEEMERRIDHLGRLGTSVITIS 95 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 GGEPLL D+ +I + K G + TNG + I+ + KAG D + Sbjct: 96 GGEPLLHPDLDRVIARIRKTGAIAGMITNGYLLNKDRIERLN---KAGLDHMQIS---ID 149 Query: 151 LVFPQVNVSPENYIGFDFERFSL 173 V P +VS ++ D L Sbjct: 150 NVMPD-DVSKKSLKVLDQRLIWL 171 >gi|297527099|ref|YP_003669123.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710] gi|297256015|gb|ADI32224.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710] Length = 342 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 5/102 (4%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY--NVDQLADLIEEQWITGEKEGRYCVL 90 N+ R C FC D + + + D + + E + Sbjct: 33 NVLQVRPTTLCPLNCIFCSVDAGPHSRNRQAEFMVDPDSIYEATLEIARFKGGGVEALID 92 Query: 91 TGGEPLLQVDVP-LIQALNKRGF--EIAVETNGTIEPPQGID 129 T G+PL + L++ L + + IA+ET+G + + ID Sbjct: 93 TVGDPLTYPYITYLVKKLKRNPYISSIALETHGALLSHRLID 134 >gi|242243931|ref|ZP_04798374.1| molybdenum (Mo2+) cofactor biosynthesis protein A [Staphylococcus epidermidis W23144] gi|242232564|gb|EES34876.1| molybdenum (Mo2+) cofactor biosynthesis protein A [Staphylococcus epidermidis W23144] Length = 340 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 24/94 (25%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D D+ + K ++L + + G K+ R +TGG Sbjct: 22 DRCNFRCDYCMPKEIFGD-DYTFL--PKDELLTFEELTRISKIYAQLGVKKIR---ITGG 75 Query: 94 EPLLQVD-------VPLIQALNKRGFEIAVETNG 120 EPLL+ + + LI + G TNG Sbjct: 76 EPLLRRNLYKLVEQLNLIDGIEDIGLT----TNG 105 >gi|153853323|ref|ZP_01994732.1| hypothetical protein DORLON_00719 [Dorea longicatena DSM 13814] gi|149754109|gb|EDM64040.1| hypothetical protein DORLON_00719 [Dorea longicatena DSM 13814] Length = 203 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 7/63 (11%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117 G Y D+L I++ W G ++GGEPLLQ+D + L Q +RG ++ Sbjct: 4 GTLYTADEL---IDKAWKYRTYWGSKGGITVSGGEPLLQIDFLLELFQKAKERGINTTLD 60 Query: 118 TNG 120 T G Sbjct: 61 TCG 63 >gi|39997200|ref|NP_953151.1| pyruvate formate-lyase-activating enzyme [Geobacter sulfurreducens PCA] gi|39984090|gb|AAR35478.1| pyruvate formate-lyase-activating enzyme, putative [Geobacter sulfurreducens PCA] Length = 298 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 45/128 (35%), Gaps = 6/128 (4%) Query: 32 CNLWSGREQDRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 C + A C C D G + G V + + + I E+ G Sbjct: 66 CPHGTAGRGQGREAACLICGRCADACPTGARRLAGTEMTVADVLAALLKDRIFYEESGGG 125 Query: 88 CVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 +GGEPL Q L+ +RG AV+T G Q ++ + DLK+ Sbjct: 126 ATFSGGEPLCQPGFLKALLAGCRERGIRTAVDTGGFAPRDQFLEVATAADLILYDLKLMD 185 Query: 146 GQELKLVF 153 + + V Sbjct: 186 AERHRAVV 193 >gi|312868229|ref|ZP_07728429.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus parasanguinis F0405] gi|311095974|gb|EFQ54218.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus parasanguinis F0405] Length = 264 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 21/99 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT + R D L + + + G Sbjct: 33 VF--LQGC-----------QMRCQYCHNPDT-WAMETNKSRERTVDDVLEEALRYRGFWG 78 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 EK G ++GGE LLQ+D + L + G ++T Sbjct: 79 EKGG--ITVSGGEALLQIDFLIALFTKAQELGIHCTLDT 115 >gi|298251942|ref|ZP_06975745.1| molybdenum cofactor biosynthesis protein A [Ktedonobacter racemifer DSM 44963] gi|297546534|gb|EFH80402.1| molybdenum cofactor biosynthesis protein A [Ktedonobacter racemifer DSM 44963] Length = 331 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 15/105 (14%) Query: 41 DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 D+ + +C +C + +G + + +L+ + LTGGEPL++ Sbjct: 21 DKCNFRCTYC----MPAEGLPWLKKAEILSYEELMRISRVAVSMGIEQIRLTGGEPLVRR 76 Query: 100 DVP-LIQALNK-RGFE-IAVETNGTIEP-------PQGIDWICVS 134 D+P L+ L++ G +++ TNG + P G+ I VS Sbjct: 77 DLPELVHQLHELEGLRSLSLTTNGILLPQQAKALAEAGLTRINVS 121 >gi|153003060|ref|YP_001377385.1| radical SAM domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152026633|gb|ABS24401.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5] Length = 608 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 14/83 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL SA T +V D+ L+E + Sbjct: 196 CNLSCPICFANASA------TGYVC-------EPTFDEAVALLERLRAYRPVPATAVQFS 242 Query: 92 GGEPLLQVD-VPLIQALNKRGFE 113 GGEP L D + L++ N+ GF Sbjct: 243 GGEPTLHPDFLALVRRANELGFS 265 >gi|73541963|ref|YP_296483.1| molybdenum cofactor biosynthesis protein A [Ralstonia eutropha JMP134] gi|72119376|gb|AAZ61639.1| GTP cyclohydrolase subunit MoaA [Ralstonia eutropha JMP134] Length = 396 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 57/142 (40%), Gaps = 25/142 (17%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + + +++ G ++ R LTGGE Sbjct: 73 DRCNFRCVYCMPKEVFDKDYTFLPHS--ELLSFEEIERTARLFVSLGVEKIR---LTGGE 127 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ ++ L++ L + + ++ + TN ++ G+ + VS A D Sbjct: 128 PLLRKNIEKLVEMLARIDTVSGKPLDLTLTTNASLLARKAQSLRDAGLRRVSVSLDAIDD 187 Query: 141 LKIKGGQELKLVFPQVNVSPEN 162 + + ++ V E Sbjct: 188 VTFRRMNDVDFAVADVLHGIET 209 >gi|319765567|ref|YP_004131068.1| YfkB-like domain-containing protein [Geobacillus sp. Y412MC52] gi|317110433|gb|ADU92925.1| YfkB-like domain-containing protein [Geobacillus sp. Y412MC52] Length = 374 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 12/86 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99 +C C + +D L +EE R +TGGEP+L Q Sbjct: 44 RCEHCAVGYTLTMKDP-EALPLDMLLRRLEEI-----PHLRSLSITGGEPMLSLKSVEQY 97 Query: 100 DVPLIQALNKRGFEIAVETNGTIEPP 125 VPL++ ++RG + +N T++ Sbjct: 98 VVPLLRYAHERGVRTQLNSNLTLDLS 123 >gi|261418751|ref|YP_003252433.1| YfkB-like domain protein [Geobacillus sp. Y412MC61] gi|261375208|gb|ACX77951.1| YfkB-like domain protein [Geobacillus sp. Y412MC61] Length = 387 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 12/86 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99 +C C + +D L +EE R +TGGEP+L Q Sbjct: 57 RCEHCAVGYTLTMKDP-EALPLDMLLRRLEEI-----PHLRSLSITGGEPMLSLKSVEQY 110 Query: 100 DVPLIQALNKRGFEIAVETNGTIEPP 125 VPL++ ++RG + +N T++ Sbjct: 111 VVPLLRYAHERGVRTQLNSNLTLDLS 136 >gi|167949588|ref|ZP_02536662.1| putative pyruvate radical-activating enzyme [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 215 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 25/96 (26%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +FC GC +C +C D + + DQ+ ++ + Sbjct: 41 IFC--QGCP-----------WRCHYCHNPD----LLPRQGEQQIPWDQILAFLQTRRGLL 83 Query: 82 EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAV 116 + V +GGEP LQ +P I + GF++ + Sbjct: 84 DA----VVFSGGEPTLQRGLPDAIGQVKAMGFKVGL 115 >gi|159041665|ref|YP_001540917.1| radical SAM domain-containing protein [Caldivirga maquilingensis IC-167] gi|157920500|gb|ABW01927.1| Radical SAM domain protein [Caldivirga maquilingensis IC-167] Length = 501 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 18/90 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C + +++ +++E G L+ Sbjct: 141 CNL-----------KCIHC---YQNAGRPLPNELTLEEKLRVVKELDEAGVPA---IALS 183 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 GGEP + D + ++ +N+RGF AV TNG Sbjct: 184 GGEPTIHPDFLTVLNEMNRRGFYSAVATNG 213 >gi|56418960|ref|YP_146278.1| hypothetical protein GK0425 [Geobacillus kaustophilus HTA426] gi|56378802|dbj|BAD74710.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 374 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 12/86 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99 +C C + +D L +EE R +TGGEP+L Q Sbjct: 44 RCEHCAVGYTLTMKDP-EALPLDMLLRRLEEI-----PHLRSLSITGGEPMLSLKSVEQY 97 Query: 100 DVPLIQALNKRGFEIAVETNGTIEPP 125 VPL++ ++RG + +N T++ Sbjct: 98 VVPLLRYAHERGVRTQLNSNLTLDLS 123 >gi|327400827|ref|YP_004341666.1| Radical SAM domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316335|gb|AEA46951.1| Radical SAM domain protein [Archaeoglobus veneficus SNP6] Length = 386 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 18/95 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C + G+K + ++ I++ + + + Sbjct: 49 CNL-----------KCVHC---YAN-AGSKSDELSTEEAKAFIDDL---ASIKAPVLLFS 90 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQ 126 GGEPLL+ D+ + A + ++ TNGT+ P+ Sbjct: 91 GGEPLLRHDIFELAAYASKRIACSLSTNGTLITPE 125 >gi|325298763|ref|YP_004258680.1| Radical SAM domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324318316|gb|ADY36207.1| Radical SAM domain protein [Bacteroides salanitronis DSM 18170] Length = 359 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 14/98 (14%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR C +D I G + + +++ + + +LT Sbjct: 40 CNL-----------HCRHCGSDCKKIAGYRD--MPKEDFLRVLDNVASHTDPHKVFIILT 86 Query: 92 GGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQGI 128 GGEPL++ D+ +A+ ++GF + TNG P+ + Sbjct: 87 GGEPLVREDLEACGRAIYEKGFPWGMVTNGLFLTPERL 124 >gi|307331899|ref|ZP_07610996.1| Radical SAM domain protein [Streptomyces violaceusniger Tu 4113] gi|306882464|gb|EFN13553.1| Radical SAM domain protein [Streptomyces violaceusniger Tu 4113] Length = 386 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 19/98 (19%) Query: 41 DRLSAQCRFCDTDFVGIQGTK-----GGRYNVD---QLADLIEEQWITGEKEGRYCVLTG 92 +R + C +C +V + R +++ A I E + VL G Sbjct: 19 NRCNIDCDYC---YVFNSKDQSSRHLPARMSLEVARATAQRIGEHAAANGMREVHVVLHG 75 Query: 93 GEPLL---QVDVPLIQALNKR-----GFEIAVETNGTI 122 GEPLL Q L+ + + ++TNGT+ Sbjct: 76 GEPLLAGPQHMAGLLSTVLEAIPPTTDVRFELQTNGTL 113 >gi|253996369|ref|YP_003048433.1| pyrroloquinoline quinone biosynthesis protein PqqE [Methylotenera mobilis JLW8] gi|253983048|gb|ACT47906.1| coenzyme PQQ biosynthesis protein E [Methylotenera mobilis JLW8] Length = 411 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 10/92 (10%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R C FC TD+ +Q + + G + Sbjct: 34 PLWLLAEVTYRCPLHCAFCYNPTDY---DKHTQNELTTEQWIQALRDARKLGAIQLG--- 87 Query: 90 LTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 ++GGEPLL+ D+ ++ K G+ + T+G Sbjct: 88 ISGGEPLLRDDIEEIVVEARKLGYYSNLITSG 119 >gi|116754972|ref|YP_844090.1| radical SAM domain-containing protein [Methanosaeta thermophila PT] gi|116666423|gb|ABK15450.1| Radical SAM domain protein [Methanosaeta thermophila PT] Length = 472 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 5/89 (5%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L + R + C C F K ++Q+ +++ +GG Sbjct: 61 LANIDVTTRCNLSCPIC---FADASPKKVYEPTMEQIERMLKILREERPVPCYAVQFSGG 117 Query: 94 EPLLQVDVPLIQAL-NKRGF-EIAVETNG 120 EP ++ D+P + AL GF +I + TNG Sbjct: 118 EPTVRDDLPEMVALARSMGFTQIQIATNG 146 >gi|269121625|ref|YP_003309802.1| glycyl-radical enzyme activating protein family [Sebaldella termitidis ATCC 33386] gi|268615503|gb|ACZ09871.1| glycyl-radical enzyme activating protein family [Sebaldella termitidis ATCC 33386] Length = 260 Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 28/111 (25%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK-------------GGRYNVDQL 70 VF F GC L C +C + G V+++ Sbjct: 26 TVF--FKGCPL-----------NCMWCSNPESQSFKPEPIWDKIKKDYIITGECKTVEEI 72 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 ++I + + L+GGE L + L++ K A ET+ Sbjct: 73 MEIILKDMDYYIESEGGVTLSGGEVLSHPEFAAELLKECKKHNIHTACETS 123 >gi|51245133|ref|YP_065017.1| coenzyme PQQ synthesis protein [Desulfotalea psychrophila LSv54] gi|50876170|emb|CAG36010.1| related to coenzyme PQQ synthesis protein [Desulfotalea psychrophila LSv54] Length = 352 Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 20/103 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR + +++ + +I++ VL+ Sbjct: 16 CNLKC--------VHCR----SSSELDVVAHPDFSLQEAKQIIDK---ITSYAKPVLVLS 60 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICV 133 GGEPLL+ D+ + Q +G + + TNGT+ D +C+ Sbjct: 61 GGEPLLREDIFDIAQYGTDQGLRMCLATNGTLV----TDEVCL 99 >gi|297531281|ref|YP_003672556.1| YfkB-like domain protein [Geobacillus sp. C56-T3] gi|297254533|gb|ADI27979.1| YfkB-like domain protein [Geobacillus sp. C56-T3] Length = 374 Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 12/86 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99 +C C + +D L +EE R +TGGEP+L Q Sbjct: 44 RCEHCAVGYTLTMKDP-EALPLDMLLRRLEEI-----PHLRSLSITGGEPMLSLKSVEQY 97 Query: 100 DVPLIQALNKRGFEIAVETNGTIEPP 125 VPL++ ++RG + +N T++ Sbjct: 98 VVPLLRYAHERGVRTQLNSNLTLDLS 123 >gi|184155556|ref|YP_001843896.1| molybdenum cofactor biosynthesis protein A [Lactobacillus fermentum IFO 3956] gi|260662959|ref|ZP_05863852.1| molybdenum cofactor biosynthesis protein A [Lactobacillus fermentum 28-3-CHN] gi|226704822|sp|B2GCN4|MOAA_LACF3 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|183226900|dbj|BAG27416.1| molybdopterin precursor synthase MoaA [Lactobacillus fermentum IFO 3956] gi|260552580|gb|EEX25580.1| molybdenum cofactor biosynthesis protein A [Lactobacillus fermentum 28-3-CHN] Length = 332 Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 8/84 (9%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C G+ R + D++ LI G + R +TGGEPLL+ Sbjct: 21 DRCNLRCVYC-MPKEGLPFFPTDRVLSQDEIVQLITNFAQLGVHKVR---ITGGEPLLRT 76 Query: 100 D-VPLIQALNKR-GFE-IAVETNG 120 D V +++ + + G E +++ TNG Sbjct: 77 DVVDIVRRIKEIDGIEDVSITTNG 100 >gi|95929921|ref|ZP_01312661.1| molybdenum cofactor synthesis-like [Desulfuromonas acetoxidans DSM 684] gi|95133890|gb|EAT15549.1| molybdenum cofactor synthesis-like [Desulfuromonas acetoxidans DSM 684] Length = 325 Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +CR+C + T + ++L + + TG ++ R +TG Sbjct: 12 NYLRLSVTDRCNMRCRYCMPAHGVEKVTHDDVLSYEELYRISQAAVTTGIEKIR---VTG 68 Query: 93 GEPLLQVDV-PLIQALNKRG--FEIAVETNG 120 GEPL++ + P ++ L++ ++ + TNG Sbjct: 69 GEPLVRKGIVPFLERLSRIDGLKQLVLTTNG 99 >gi|258406073|ref|YP_003198815.1| Radical SAM domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257798300|gb|ACV69237.1| Radical SAM domain protein [Desulfohalobium retbaense DSM 5692] Length = 394 Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 19/96 (19%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 CNL +C C + I + DQ +I++ Sbjct: 47 TQRCNL-----------KCVHC---YAQAIDPEGKDEISTDQGKAIIDDL---AAFGAPV 89 Query: 88 CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 + +GGEPL++ D+P L +G + TNGT+ Sbjct: 90 MLFSGGEPLVRKDLPELASYAVSKGMRAVISTNGTL 125 >gi|256398061|ref|YP_003119625.1| radical SAM domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256364287|gb|ACU77784.1| Radical SAM domain protein [Catenulispora acidiphila DSM 44928] Length = 370 Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 7/77 (9%) Query: 46 QCRFCDTDFVGIQGTKGG-RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-L 103 +CR C +VG +++ +++ ITG + Y + GGEP + +P + Sbjct: 35 RCRHC---YVGNDRLNAANTMSLELAIQIMDYFKITGGHDKVYLL--GGEPTMHPQLPEM 89 Query: 104 IQALNKRGFEIAVETNG 120 + A +R +++ + +NG Sbjct: 90 VTAARERDYQVTISSNG 106 >gi|225568820|ref|ZP_03777845.1| hypothetical protein CLOHYLEM_04899 [Clostridium hylemonae DSM 15053] gi|225162319|gb|EEG74938.1| hypothetical protein CLOHYLEM_04899 [Clostridium hylemonae DSM 15053] Length = 360 Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 25/97 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R +A C G + Q ++ + G + +L Sbjct: 71 CNLHCQGCYARANASC---------TDGGGQAQLTAAQWGEIFCQAGELGVA---FILLA 118 Query: 92 GGEPLLQVDVPLIQALNKRG------FEIAVETNGTI 122 GGEPLL+ DV L + G F + TNGT+ Sbjct: 119 GGEPLLRRDV-----LAEAGRHRRILFPVF--TNGTM 148 >gi|229915846|ref|YP_002884492.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Exiguobacterium sp. AT1b] gi|229467275|gb|ACQ69047.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Exiguobacterium sp. AT1b] Length = 152 Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 28/131 (21%) Query: 1 MKLYSIKEIFLTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 M++ S+ E ++ G G +F +GC C+ C Sbjct: 2 MRILSVVE--ESVVDGPGIRT---VIF--TAGCP-----------HHCKGC----HNPSS 39 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVE 117 ++ +L++ ++G ++GGEP LQ L+ A G + V Sbjct: 40 WNPAGGEEVEVEELVQRVKLSGWDG---VTISGGEPFLQSSALAKLVTACKSLGKNVWVY 96 Query: 118 TNGTIEPPQGI 128 T T+E + + Sbjct: 97 TGYTLEQLEAM 107 >gi|302349096|ref|YP_003816734.1| Heme biosynthesis protein [Acidilobus saccharovorans 345-15] gi|302329508|gb|ADL19703.1| Heme biosynthesis protein [Acidilobus saccharovorans 345-15] Length = 386 Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C ++ + ++ + E G R + Sbjct: 55 CNL-----------RCLHC---YISADKPLPDELSYEEWSRAFSELVDLG---TRVLYIL 97 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEP+L+ D+ +I + + G ++++ TNGT+ Sbjct: 98 GGEPMLRRDIYDIISSASGLGMKVSMSTNGTL 129 >gi|288561221|ref|YP_003424707.1| pyruvate formate-lyase-activating enzyme PflA2 [Methanobrevibacter ruminantium M1] gi|288543931|gb|ADC47815.1| pyruvate formate-lyase-activating enzyme PflA2 [Methanobrevibacter ruminantium M1] Length = 447 Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 23/131 (17%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GC L +C +C F + Y VD+L + ++ I G V Sbjct: 31 GCPL-----------RCAYCFNPFSWDGSLEPKTYAVDELYEEVKRDNIYFLSTGGGLVF 79 Query: 91 TGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI------EPPQGIDWICVS----PKAG 138 GGEPLL + I+ G++ +ET+ ++ + ID+ V K Sbjct: 80 GGGEPLLYHEFIKEFIKKYKSTGWKFTLETSLSVKKDILRDIIDYIDFFIVDTKDMNKNR 139 Query: 139 CDLKIKGGQEL 149 +L KG EL Sbjct: 140 YELYTKGDYEL 150 >gi|153953012|ref|YP_001393777.1| Fe-S oxidoreductase [Clostridium kluyveri DSM 555] gi|219853668|ref|YP_002470790.1| hypothetical protein CKR_0325 [Clostridium kluyveri NBRC 12016] gi|146345893|gb|EDK32429.1| Predicted Fe-S oxidoreductase [Clostridium kluyveri DSM 555] gi|219567392|dbj|BAH05376.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 392 Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 23/95 (24%) Query: 32 CNLWSGREQDRLSAQCRFCDT---DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL C + D+ F +K +Y ++ LA+L + Sbjct: 47 CNLKC--------RHC-YADSQNKKFEEELDSKEAKYLIEDLAEL----------KVPVL 87 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 +++GGEPL++ D+ L+ + TNGT+ Sbjct: 88 LISGGEPLMREDLFELLNYAKNYNIRSTISTNGTL 122 >gi|297538387|ref|YP_003674156.1| coenzyme PQQ biosynthesis protein E [Methylotenera sp. 301] gi|297257734|gb|ADI29579.1| coenzyme PQQ biosynthesis protein E [Methylotenera sp. 301] Length = 409 Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 12/93 (12%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R C FC TD+ +Q + + G + Sbjct: 33 PLWLLAEVTYRCPLHCAFCYNPTDY---DKHTQNELTTEQWIQALRDARKMGAIQLG--- 86 Query: 90 LTGGEPLLQVDVP--LIQALNKRGFEIAVETNG 120 ++GGEPLL+ D+ +I+A K G+ + T+G Sbjct: 87 ISGGEPLLRDDIEDIVIEA-RKLGYYSNLITSG 118 >gi|168215418|ref|ZP_02641043.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens NCTC 8239] gi|182382388|gb|EDT79867.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens NCTC 8239] Length = 331 Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 10/85 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D+ + +C +C +D++ +++E G K+ R LTGGEPL++ Sbjct: 26 DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 82 Query: 101 VPLIQALNKRGFEIAVE-----TNG 120 + + + +E TNG Sbjct: 83 I--VDLIKNINKIPEIEEICLTTNG 105 >gi|167462032|ref|ZP_02327121.1| pyrroloquinoline quinone biosynthesis protein PqqE [Paenibacillus larvae subsp. larvae BRL-230010] Length = 253 Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 15/130 (11%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105 C C + V+Q ++ E G + TGGEP + LI Sbjct: 8 CPVC----KRFEERDEAELTVEQWKRILTELSHFGTSA---VLFTGGEPTRYPYIHELID 60 Query: 106 ALNKRGFEIAVETNGTIEPPQGIDW----ICVSPKAGCDLKIKGGQELKLVFPQVNVSPE 161 + G + TNG + Q I V+ K + I+ +K +V + + Sbjct: 61 FSIELGMATNLHTNGLVPLKQVPSVLGFHITVTSKRNLNKIIQNYCNIK---DRVTLLVD 117 Query: 162 NYIGFDFERF 171 +++ D ++ Sbjct: 118 DHLFSDVKQI 127 >gi|110801520|ref|YP_699075.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens SM101] gi|123341686|sp|Q0SS32|MOAA_CLOPS RecName: Full=Molybdenum cofactor biosynthesis protein A gi|110682021|gb|ABG85391.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens SM101] Length = 323 Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 10/85 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D+ + +C +C +D++ +++E G K+ R LTGGEPL++ Sbjct: 18 DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 74 Query: 101 VPLIQALNKRGFEIAVE-----TNG 120 + + + +E TNG Sbjct: 75 I--VDLIKNINKIPEIEEICLTTNG 97 >gi|52787503|ref|YP_093332.1| hypothetical protein BLi03823 [Bacillus licheniformis ATCC 14580] gi|319647988|ref|ZP_08002205.1| hypothetical protein HMPREF1012_03244 [Bacillus sp. BT1B_CT2] gi|52350005|gb|AAU42639.1| putative protein [Bacillus licheniformis ATCC 14580] gi|317389623|gb|EFV70433.1| hypothetical protein HMPREF1012_03244 [Bacillus sp. BT1B_CT2] Length = 170 Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 28/113 (24%) Query: 1 MKLYSIKEIFLTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 MK+ +I I ++ GEG VF +GC ++ S Sbjct: 17 MKVMNI--IHDSIVDGEGLRT---VVF--LAGCPHMCEGCHNKQS------------WNI 57 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKR 110 G +VD++ + I + +GGEPLL + L + + + Sbjct: 58 NNGFDMSVDEVFEEIM------KNPLTNVTYSGGEPLLHAGELIELSEKIKQH 104 >gi|4589922|dbj|BAA76928.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens] Length = 323 Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 10/85 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D+ + +C +C +D++ +++E G K+ R LTGGEPL++ Sbjct: 18 DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 74 Query: 101 VPLIQALNKRGFEIAVE-----TNG 120 + + + +E TNG Sbjct: 75 I--VDLIKNINKIPEIEEICLTTNG 97 >gi|260899694|ref|ZP_05908089.1| glycyl-radical enzyme activating protein family protein [Vibrio parahaemolyticus AQ4037] gi|308106868|gb|EFO44408.1| glycyl-radical enzyme activating protein family protein [Vibrio parahaemolyticus AQ4037] Length = 315 Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Query: 88 CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEP 124 +GGEPL+Q ++ L + L++ AVE+ + Sbjct: 142 VTFSGGEPLMQPNLVAELAERLHQNHVSTAVESCMHVPW 180 >gi|157785651|ref|NP_001099130.1| molybdenum cofactor biosynthesis protein 1 [Danio rerio] gi|156788953|gb|ABU96048.1| molybdenum cofactor synthesis step-1 variant 1 [Danio rerio] Length = 402 Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 12/113 (10%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLT 91 N ++ + +C++C G++ T + D+L + G + R +T Sbjct: 87 NYLRISLTEKCNLRCQYC-MPQDGVKLTPRSQLLTTDELLTVARLFVQEGVNKIR---IT 142 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNGTIEPPQGIDWICVSPKAGCDL 141 GGEPL++ D + +I L K G + IAV TNG D KAG DL Sbjct: 143 GGEPLIRPDILHIIAELRKLEGLKTIAVTTNGMNLAKILPDLK----KAGVDL 191 >gi|148263076|ref|YP_001229782.1| radical SAM domain-containing protein [Geobacter uraniireducens Rf4] gi|146396576|gb|ABQ25209.1| Radical SAM domain protein [Geobacter uraniireducens Rf4] Length = 458 Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 20/106 (18%) Query: 31 GCNLWSGREQ--------------DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 GC G +R + C +C F + + +A+ + Sbjct: 79 GCPFDCGICAGHRQQSCTVLIEVTERCNLACPYC---FAAAGRQEVHDPPLAVIAERL-R 134 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGFE-IAVETNG 120 + L+GGEP ++ D+P I L + GF I + +NG Sbjct: 135 AAMQASGPHNIVQLSGGEPTVRDDLPAIITLGRELGFPFIQLNSNG 180 >gi|83648508|ref|YP_436943.1| molybdenum cofactor biosynthesis protein [Hahella chejuensis KCTC 2396] gi|83636551|gb|ABC32518.1| Molybdenum cofactor biosynthesis enzyme [Hahella chejuensis KCTC 2396] Length = 328 Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 7/100 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR +C +C + T R + L +L E E LTG Sbjct: 15 NYVRLSVTDRCDFRCVYC----MAEDMTFLPREQILSLEELYEVGKAFVELGVHKLRLTG 70 Query: 93 GEPLLQVD-VPLIQAL-NKRG-FEIAVETNGTIEPPQGID 129 GEPL++ + + L+ L +G E+ + TNG+ D Sbjct: 71 GEPLVRRNILELVDKLGRLQGLHELTLTTNGSQLVRMAKD 110 >gi|84390457|ref|ZP_00991468.1| pyruvate formate-lyase activating enzyme [Vibrio splendidus 12B01] gi|84376717|gb|EAP93593.1| pyruvate formate-lyase activating enzyme [Vibrio splendidus 12B01] Length = 304 Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 12/112 (10%) Query: 30 SGCNLWS----GREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 SGC + + + A C CD + N +++++ E + Sbjct: 71 SGCPSSALSMIDGKVNWDPAACTNCDQCIDVCDHKSSPKINTMAVSEVL-ELVRHNQFFL 129 Query: 86 RYCVLTGGEPLLQV--DVPLIQA----LNKRGFEIAVETNGTIEPPQGIDWI 131 ++GGE +Q+ + L QA L +++NG++ QG D + Sbjct: 130 SGITISGGEATMQLPFIIELFQAIKSDLQLAHLTCFIDSNGSLSL-QGWDKV 180 >gi|299783310|gb|ADJ41308.1| Molybdenum (Mo2+) cofactor biosynthesis enzyme [Lactobacillus fermentum CECT 5716] Length = 332 Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 8/84 (9%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C G+ R + D++ LI G + R +TGGEPLL+ Sbjct: 21 DRCNLRCVYC-MPKEGLPFFPTDRVLSQDEIVQLITNFAQLGIHKVR---ITGGEPLLRT 76 Query: 100 D-VPLIQALNKR-GFE-IAVETNG 120 D V +++ + + G E +++ TNG Sbjct: 77 DVVDIVRRIKEIDGIEDVSITTNG 100 >gi|297545371|ref|YP_003677673.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843146|gb|ADH61662.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 453 Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 20/105 (19%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C +C +T+ G + + + I+ + V Sbjct: 101 CNL-----------KCEYCIETEIQGFRRENMTNDTTKNIINWIQRKIDEKFYHILELVF 149 Query: 91 TGGEPLLQVDVPL-------IQALNKR-GFEIAVETNGTIEPPQG 127 GGEPLL D +AL K F ++ TNGTIE Sbjct: 150 YGGEPLLNKDPIFQICDYFYNEALKKNLIFSFSIITNGTIELSDD 194 >gi|229196388|ref|ZP_04323136.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1293] gi|228587242|gb|EEK45312.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1293] Length = 333 Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D F+ + D++ L G + R LTG Sbjct: 18 DRCNFRCTYCMPAEVFGPDYAFLQEEC----LLTFDEIERLARLFISMGINKIR---LTG 70 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 GEPLL+ D+P LI L K G + I + TNG Sbjct: 71 GEPLLRKDLPKLIGRLAKLEGLKDIGLTTNG 101 >gi|209524544|ref|ZP_03273092.1| Radical SAM domain protein [Arthrospira maxima CS-328] gi|209495002|gb|EDZ95309.1| Radical SAM domain protein [Arthrospira maxima CS-328] Length = 340 Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 20/94 (21%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 + CNL + +G R ++EE Sbjct: 31 LAKCNLSCHHCMVYSPIR-----------KGPSLSRM-----LQIVEEMTRIN---VHKV 71 Query: 89 VLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGT 121 +++GGEP L L AL ++G + + TN T Sbjct: 72 LISGGEPFLFPFLEELCFALYEKGILVDINTNAT 105 >gi|171185823|ref|YP_001794742.1| radical SAM domain-containing protein [Thermoproteus neutrophilus V24Sta] gi|170935035|gb|ACB40296.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta] Length = 373 Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 18/93 (19%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F F+GCN +C +C + G + LA + Q E+ Sbjct: 153 TIF--FAGCNF-----------RCVYCQNWDISQHPEAGVEVTSESLAAI---QIGLREE 196 Query: 84 EGRYCVLTGGEPL--LQVDVPLIQALNKRGFEI 114 R GGEP + + ++ L RG + Sbjct: 197 GARNINWVGGEPTPNIPYILESMKVLASRGVNV 229 >gi|117924371|ref|YP_864988.1| radical SAM protein [Magnetococcus sp. MC-1] gi|117608127|gb|ABK43582.1| Radical SAM domain protein [Magnetococcus sp. MC-1] Length = 365 Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 9/87 (10%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDVP-- 102 +C FC D++G + + D + + + G K Y G GEPLL + Sbjct: 51 RCTFCAVDYIGYNS--ANKLDADMMKARLPQMGALGIKSIMYA---GEGEPLLHKRISEI 105 Query: 103 LIQALNKRGFEIAVETNGTIEPPQGID 129 L+ G + A+ TN T+ P +D Sbjct: 106 LLDT-KAAGIDTALTTNATVLPMDFLD 131 >gi|325856335|ref|ZP_08172051.1| pyruvate formate-lyase 1-activating enzyme [Prevotella denticola CRIS 18C-A] gi|325483519|gb|EGC86491.1| pyruvate formate-lyase 1-activating enzyme [Prevotella denticola CRIS 18C-A] Length = 246 Score = 39.6 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 34/127 (26%) Query: 3 LYSI--KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVG 56 + + E F ++ G G +F GC + +CR+C DT Sbjct: 7 MLRVHSVESFGSVDGPGIRFV----IF--LKGC-----------AMRCRYCHNPDT---- 45 Query: 57 IQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR---GF 112 G +VD L+ + Q GEK G ++GGE LLQ PL + K G Sbjct: 46 WDRAGGILRSVDDVLSQALRYQSYWGEKGG--ITVSGGEALLQ-LRPLTELFRKAKSLGV 102 Query: 113 EIAVETN 119 ++T+ Sbjct: 103 NTCLDTS 109 >gi|307353458|ref|YP_003894509.1| Radical SAM domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307156691|gb|ADN36071.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571] Length = 496 Score = 39.6 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 13/99 (13%) Query: 32 CN-------LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEK 83 CN L + +R + C FC F + + DQ+ D++ Sbjct: 83 CNNHKSTTLLANIDLTNRCNLNCDFC---FANARACGFVYEPDFDQIVDMLRVLRDEKPC 139 Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120 +GGEP ++ D+ +I+ + GF ++ + TNG Sbjct: 140 PTPAVQFSGGEPTMRDDLVEIIKKAREMGFNQVQMATNG 178 >gi|288559903|ref|YP_003423389.1| radical SAM domain-containing protein [Methanobrevibacter ruminantium M1] gi|288542613|gb|ADC46497.1| radical SAM domain-containing protein [Methanobrevibacter ruminantium M1] Length = 363 Score = 39.6 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 15/92 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R + C + + D D+ ++ G + VL Sbjct: 72 CNLHCVGCYSRANNSCS---------DEAPLNQLSADDWEDIFKQARDIG---ISFIVLA 119 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GGEP+++ D + + F I TNGT+ Sbjct: 120 GGEPMIREDVIKKASKFPEILFPIF--TNGTM 149 >gi|189425295|ref|YP_001952472.1| hopanoid biosynthesis associated radical SAM protein HpnH [Geobacter lovleyi SZ] gi|189421554|gb|ACD95952.1| hopanoid biosynthesis associated radical SAM protein HpnH [Geobacter lovleyi SZ] Length = 333 Score = 39.6 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%) Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119 +TGGEP L + L+Q + RG I TN Sbjct: 72 PAPVVTITGGEPFLYPHIYELVQGILDRGRHIMFCTN 108 >gi|167644273|ref|YP_001681936.1| radical SAM domain-containing protein [Caulobacter sp. K31] gi|167346703|gb|ABZ69438.1| Radical SAM domain protein [Caulobacter sp. K31] Length = 481 Score = 39.6 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 14/103 (13%) Query: 31 GCNLWSGREQDRLSAQCR-----------FCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G D C C F G + + ++ + + + + Sbjct: 95 GCPYDCGLCPDHEQHSCLAILEINEACNLTCPVCFAGSSTSLDAHRPLAEV-ERMLDVIV 153 Query: 80 TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNG 120 E E L+GGEP L ++ A R + + TNG Sbjct: 154 ASEGEPDLVQLSGGEPTLHPQFFEILSAARARPIRHLMINTNG 196 >gi|89894969|ref|YP_518456.1| hypothetical protein DSY2223 [Desulfitobacterium hafniense Y51] gi|219669371|ref|YP_002459806.1| radical SAM protein [Desulfitobacterium hafniense DCB-2] gi|89334417|dbj|BAE84012.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539631|gb|ACL21370.1| Radical SAM domain protein [Desulfitobacterium hafniense DCB-2] Length = 391 Score = 39.6 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL AQ + G T+ + +D LAD + + + Sbjct: 47 CNLQCAHCYMESDAQ------KYQGELTTEEAKRFIDDLAD----------FKVPVLLFS 90 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GGEPL++ D L + +G + TNGT+ Sbjct: 91 GGEPLIRPDFFELAEYAAAKGIRPTLSTNGTL 122 >gi|326794480|ref|YP_004312300.1| molybdenum cofactor biosynthesis protein A [Marinomonas mediterranea MMB-1] gi|326545244|gb|ADZ90464.1| molybdenum cofactor biosynthesis protein A [Marinomonas mediterranea MMB-1] Length = 331 Score = 39.6 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 13/87 (14%) Query: 41 DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 D+ +C +C D D + R ++ L +++ + + +TGGEPL++ Sbjct: 23 DKCDFRCTYCMDEDVTFL-----PRSHILTLEEIVTVAQTFVKMGSKKIRITGGEPLVRK 77 Query: 100 DVPLIQALNKR----GF-EIAVETNGT 121 ++ + AL K G E+ + TNG+ Sbjct: 78 NI--LWALEKIANTDGLEELTLTTNGS 102 >gi|291458400|ref|ZP_06597790.1| pyruvate formate-lyase 1-activating enzyme [Oribacterium sp. oral taxon 078 str. F0262] gi|291418933|gb|EFE92652.1| pyruvate formate-lyase 1-activating enzyme [Oribacterium sp. oral taxon 078 str. F0262] Length = 269 Score = 39.6 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 28/119 (23%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G +F GC + +CR+C DT Sbjct: 32 VESFGSVDGPGTRFL----IF--LKGC-----------AMRCRYCHNPDT----WDYHSE 70 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 + D L D E ++G ++GG+PL+Q+D + L + +RG ++T+ Sbjct: 71 DMRSADSLLDQAERYREYWGEDGG-ITVSGGDPLIQIDFVLQLFEEAKRRGINTCLDTS 128 >gi|254383767|ref|ZP_04999115.1| radical SAM domain containing protein [Streptomyces sp. Mg1] gi|194342660|gb|EDX23626.1| radical SAM domain containing protein [Streptomyces sp. Mg1] Length = 384 Score = 39.6 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 19/107 (17%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD--------LIEEQWITGEKEGRYCVLTG 92 +R + C +C +V + R+ +++ I E + VL G Sbjct: 19 NRCNIDCDYC---YVFNSADQAWRHLPARMSADVARAAGLRIGEHAAVHGLRSVHVVLHG 75 Query: 93 GEPLL---QVDVPLIQALNK---RGFEIAVE--TNGTIEPPQGIDWI 131 GEPLL + L+ A+ + G + E TNGT+ +D Sbjct: 76 GEPLLTGPRHMADLLGAVREGVPAGVAVRFELQTNGTLLTEPWLDLF 122 >gi|330686411|gb|EGG98011.1| molybdenum cofactor biosynthesis protein A [Staphylococcus epidermidis VCU121] Length = 341 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 4/84 (4%) Query: 41 DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C + G + + +++ + + + +TGGEPLL+ Sbjct: 23 DRCNFRCDYCMPKEIFGDDFVFLPKEELLTFEEMVRISKLYAQLGVKKIRITGGEPLLRR 82 Query: 100 DV-PLIQALNK-RGFE-IAVETNG 120 ++ LI+ LN+ G E I + TNG Sbjct: 83 NLYQLIEQLNQIEGIEDIGLTTNG 106 >gi|254482140|ref|ZP_05095381.1| radical SAM domain protein [marine gamma proteobacterium HTCC2148] gi|214037465|gb|EEB78131.1| radical SAM domain protein [marine gamma proteobacterium HTCC2148] Length = 431 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 25/112 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN D G R++ ++L + I+ G K V+ Sbjct: 84 CNYACDHCVDLDILN--------------TGIRFDHEKLLESIKVMAERGMKS--VIVIG 127 Query: 92 GGEPLLQVDVPL-IQALNKRGFEIAVETNGT--------IEPPQGIDWICVS 134 GGEP L I+ + +IA+ +NGT + DW+ +S Sbjct: 128 GGEPTLYPKFEETIRFMKDLKLQIAIVSNGTGNDKIAKVADCMDKADWVRLS 179 >gi|188994934|ref|YP_001929186.1| hypothetical protein PGN_1070 [Porphyromonas gingivalis ATCC 33277] gi|188594614|dbj|BAG33589.1| hypothetical protein PGN_1070 [Porphyromonas gingivalis ATCC 33277] Length = 359 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 11/87 (12%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLAD--LIEEQWITGEKEGRYCVLTGGEPLLQVDVP-- 102 C FC + G +++ + +E +++GGEPLL+ D+ Sbjct: 37 CSFC-------ESGNGLWRDIEDIVRDVWMESAQTFVNNGLEVAIISGGEPLLRADLASD 89 Query: 103 LIQALNKRGFEIAVETNGTIEPPQGID 129 +I+ K G + T+G + ID Sbjct: 90 MIKLFEKEGVFSVLNTSGVLFSRNSID 116 >gi|118472436|ref|YP_889651.1| radical SAM domain-containing protein [Mycobacterium smegmatis str. MC2 155] gi|118173723|gb|ABK74619.1| radical SAM domain protein [Mycobacterium smegmatis str. MC2 155] Length = 522 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 16/91 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C F V ++ I+++ +L+ Sbjct: 123 CNL-----------RCPTC---FTDSSPDLRNVVPVAEVLANIDQRLARENGRIDVLMLS 168 Query: 92 GGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120 GGEP L +P L+ L KR I V +NG Sbjct: 169 GGEPTLHPQLPTLLAELVKRPITRILVNSNG 199 >gi|21225059|ref|NP_630838.1| hypothetical protein SCO6766 [Streptomyces coelicolor A3(2)] gi|256783787|ref|ZP_05522218.1| hypothetical protein SlivT_04765 [Streptomyces lividans TK24] gi|289767669|ref|ZP_06527047.1| hopanoid biosynthesis associated radical SAM protein HpnH [Streptomyces lividans TK24] gi|4539170|emb|CAB39699.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] gi|289697868|gb|EFD65297.1| hopanoid biosynthesis associated radical SAM protein HpnH [Streptomyces lividans TK24] Length = 340 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 38 CNLAC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + +++ L + + + TN + + +D SP + I G +E Sbjct: 80 GGEPLMHPQIDEIVRQLVAKRKYVFLCTN-AMLMRKKMDKFKPSPYFAFAVHIDGLRE 136 >gi|317497375|ref|ZP_07955698.1| glycyl-radical enzyme activating protein family [Lachnospiraceae bacterium 5_1_63FAA] gi|316895444|gb|EFV17603.1| glycyl-radical enzyme activating protein family [Lachnospiraceae bacterium 5_1_63FAA] Length = 304 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 8/92 (8%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 G + ++ D + Q + ++GGEPL D + L++ K A+ET Sbjct: 107 GKPMEISEIIDQVLRQELFYHHGEGGLTVSGGEPLSHGDWLIRLLKEAKKHRLHTAIETC 166 Query: 120 G--TIEPPQGI----DWICVSPKAGCDLKIKG 145 G + E + + D I K+ D K K Sbjct: 167 GYASYEVLKEVINYLDVIFFDIKSMNDEKHKR 198 >gi|323343351|ref|ZP_08083578.1| pyruvate formate-lyase activating enzyme [Prevotella oralis ATCC 33269] gi|323095170|gb|EFZ37744.1| pyruvate formate-lyase activating enzyme [Prevotella oralis ATCC 33269] Length = 283 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 30/120 (25%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G +F GC +CR+C DT Sbjct: 47 VESFGSVDGPGIRFV----IF--LKGC-----------RMRCRYCHNPDT----WDKHSK 85 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETN 119 + D+L + + +G ++GGE LLQ+D LI K G ++T+ Sbjct: 86 DMRSADELIEQAQRYRSYWGAKGG-ITVSGGEALLQIDF-LIDLFRKAKKLGINTCLDTS 143 >gi|298506217|gb|ADI84940.1| glycerol dehydratase-activating enzyme, putative [Geobacter sulfurreducens KN400] Length = 298 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 45/128 (35%), Gaps = 6/128 (4%) Query: 32 CNLWSGREQDRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 C + A C C D G + G V + + + I E+ G Sbjct: 66 CPHGTAGRGQGREAACLICGRCADACPTGARRLTGTEMTVADVLAALLKDRIFYEESGGG 125 Query: 88 CVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 +GGEPL Q L+ +RG AV+T G Q ++ + DLK+ Sbjct: 126 ATFSGGEPLCQPGFLKALLAGCRERGIRTAVDTGGFAPRDQFLEVATAADLILYDLKLMD 185 Query: 146 GQELKLVF 153 + + V Sbjct: 186 AERHRAVV 193 >gi|255523588|ref|ZP_05390555.1| Radical SAM domain protein [Clostridium carboxidivorans P7] gi|255512643|gb|EET88916.1| Radical SAM domain protein [Clostridium carboxidivorans P7] Length = 350 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 20/124 (16%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV--------LTGG 93 R + +C+ C + G + +++L +L + + + C +TGG Sbjct: 13 RCNKRCKHC-----YQEDYSGEEFTIEKLKELGSQYLELLYEYNKNCNEKIKGQINITGG 67 Query: 94 EPLLQVDV-PLIQALNKRG--FEIAVETNGTIEPPQG-IDWICVSPK---AGCDLKIKGG 146 EP ++ D+ L+ K F + TNG++ + I +PK D K Sbjct: 68 EPFIREDIWELLDFFKKNADYFNFGILTNGSLLNEENVIRLKSYNPKMVQVSLDGSKKVH 127 Query: 147 QELK 150 E++ Sbjct: 128 DEIR 131 >gi|254168872|ref|ZP_04875712.1| Wyosine base formation family [Aciduliprofundum boonei T469] gi|197622136|gb|EDY34711.1| Wyosine base formation family [Aciduliprofundum boonei T469] Length = 308 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 +E+ E LTG EP L + LI+ +KRGF + TNGT+ Sbjct: 112 LEKWKEAMEPRHVAISLTG-EPTLYPRLGELIEEYHKRGFTTFLVTNGTMP 161 >gi|149920707|ref|ZP_01909172.1| hypothetical molybdenum cofactor biosynthesis protein A [Plesiocystis pacifica SIR-1] gi|149818494|gb|EDM77943.1| hypothetical molybdenum cofactor biosynthesis protein A [Plesiocystis pacifica SIR-1] Length = 587 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 50/146 (34%), Gaps = 26/146 (17%) Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71 T+QG G +++ + + +C FC T+ G L Sbjct: 31 TVQG----TG-----------HVFEIQLGHLCNNRCVFC----SSGMLTQEGLAKPVPLD 71 Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN---KRGFE-IAVETNGT-IEPPQ 126 D++ R + GGEP L + AL GFE I + TNG + P Sbjct: 72 DILAAIAEAKAAGARRLIFLGGEPTLHKG--FLTALEHTVAVGFEDIVIFTNGVLLPQPG 129 Query: 127 GIDWICVSPKAGCDLKIKGGQELKLV 152 ID + + I+G E V Sbjct: 130 FIDKVVALGNFEWRISIQGADEASHV 155 >gi|78066534|ref|YP_369303.1| hypothetical protein Bcep18194_A5065 [Burkholderia sp. 383] gi|77967279|gb|ABB08659.1| hypothetical protein Bcep18194_A5065 [Burkholderia sp. 383] Length = 311 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 42/128 (32%), Gaps = 27/128 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + + + + ADL + + + Sbjct: 68 CNLTCAECCSLSPLLPEW----YASPESLE---------ADLRMAAKVLRPRMFKLV--- 111 Query: 92 GGEPLLQV-DVPLIQALNKRGFE--IAVETNG------TIEPPQGIDWICVS--PKAGCD 140 GGEPLL V L+Q + G I+V TNG T Q +D + +S PK Sbjct: 112 GGEPLLHPALVELVQRVRATGIAPVISVTTNGLKLGEMTCAFWQAVDALTISRYPKPSLS 171 Query: 141 LKIKGGQE 148 + E Sbjct: 172 PDLVAHIE 179 >gi|160903010|ref|YP_001568591.1| radical SAM domain-containing protein [Petrotoga mobilis SJ95] gi|160360654|gb|ABX32268.1| Radical SAM domain protein [Petrotoga mobilis SJ95] Length = 474 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 36/114 (31%), Gaps = 24/114 (21%) Query: 32 CNLWS--GREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 CNL DR + G ++ + IE+ +G K Sbjct: 17 CNLSCIHCYNNDRYGKNNIY----------HSGKDLTTEEARNAIEKIANSGVKHIHLL- 65 Query: 90 LTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEPPQ--------GIDWICVS 134 GGEP + L K G + V TNG P+ +D I VS Sbjct: 66 --GGEPFCRKDIFELCSFAKKEGLMVTVNTNGLFLTPENCEKLVFSEVDSITVS 117 >gi|70605921|ref|YP_254791.1| hypothetical protein Saci_0071 [Sulfolobus acidocaldarius DSM 639] gi|68566569|gb|AAY79498.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639] Length = 337 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 22/107 (20%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT--DFVGIQGTKGGRYNVDQLADLIEEQW 78 G++ VF C C +C G + L D I E + Sbjct: 26 GKLVVFI-TGEC-----------GDNCYYCPVSEQRFGKDKAFANEAPAENLVDFIYEAY 73 Query: 79 ITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKR---GFEIAVETNG 120 +TGG+PL+++D V LI+ F I + T+G Sbjct: 74 RMRALGAG---ITGGDPLIRIDKVVSLIKKFKDEFGQEFHIHLYTSG 117 >gi|322387090|ref|ZP_08060701.1| pyruvate formate-lyase activating enzyme [Streptococcus infantis ATCC 700779] gi|321142077|gb|EFX37571.1| pyruvate formate-lyase activating enzyme [Streptococcus infantis ATCC 700779] Length = 264 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 21/99 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT + R D L + + + G Sbjct: 33 VF--LQGC-----------QMRCQYCHNPDT-WAMETNKSRVRTVDDVLEEALRYRGFWG 78 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 +K G ++GGE LLQ+D + L ++G ++T Sbjct: 79 DKGG--ITVSGGEALLQIDFLIALFTKAKEKGIHCTLDT 115 >gi|291396166|ref|XP_002714713.1| PREDICTED: molybdenum cofactor synthesis-step 1 protein [Oryctolagus cuniculus] Length = 613 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + K +++ L G + R LT Sbjct: 80 CNL-----------RCQYCMPEEGVSLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 125 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GGEPL++ D V ++ L++ G I V TNG Sbjct: 126 GGEPLIRPDVVDIVARLHRLEGLRTIGVTTNG 157 >gi|266621786|ref|ZP_06114721.1| pyruvate formate-lyase-activating enzyme [Clostridium hathewayi DSM 13479] gi|288866524|gb|EFC98822.1| pyruvate formate-lyase-activating enzyme [Clostridium hathewayi DSM 13479] Length = 314 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 41/130 (31%), Gaps = 38/130 (29%) Query: 24 AVFCRFSGCNLWSGREQDRL-----------SAQCRFC---------DTDFVGIQGTK-- 61 VF GC L + +A C C T + Sbjct: 56 TVF--LKGCPLRCSWCHNPEGLSGVPQLMVGTASCTGCGKCREVCRHKTCISCGECIPVC 113 Query: 62 --------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF- 112 G + ++L I + + G +GGEPL+Q + L + L G Sbjct: 114 PLHLRRIAGEKMTSEELIFRIRKSSDYYARYGGGVTFSGGEPLMQAEF-LTEVL--SGIP 170 Query: 113 EIA--VETNG 120 E+ VET+G Sbjct: 171 EVHRAVETSG 180 >gi|238893550|ref|YP_002918284.1| putative iron-sulfur modifier protein [Klebsiella pneumoniae NTUH-K2044] gi|238545866|dbj|BAH62217.1| putative iron-sulfur modifier protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 395 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 26/102 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC--V 89 CNL CR+C + T + + +L I R V Sbjct: 35 CNL-----------ACRYC---YYPQDETPVNKMDDARLEQFIRRYIAAQPAGAREINFV 80 Query: 90 LTGGEPLLQVDVPLIQ---ALNKR----GFEI--AVETNGTI 122 GGEPLL + + AL R G I +++TNGT+ Sbjct: 81 WQGGEPLL-AGLSFYKKALALQARYAPDGVTISNSLQTNGTL 121 >gi|260881038|ref|ZP_05403451.2| pyruvate formate-lyase 1-activating enzyme [Mitsuokella multacida DSM 20544] gi|260850246|gb|EEX70253.1| pyruvate formate-lyase 1-activating enzyme [Mitsuokella multacida DSM 20544] Length = 244 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 42/119 (35%), Gaps = 27/119 (22%) Query: 8 EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F ++ G G +F GC + +C +C DT G Sbjct: 11 ETFGSVDGPGTRFI----IF--LQGC-----------AMRCLYCHNVDT---WDAKKGGE 50 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK--RGFEIAVETNG 120 D L D E EG ++GGEPLLQ+D L RG ++T G Sbjct: 51 LRTADDLLDQAERYRPYWGPEGG-ITVSGGEPLLQLDFLLDLFQKAKRRGINTCIDTAG 108 >gi|225163748|ref|ZP_03726049.1| (Formate-C-acetyltransferase)-activating enzyme [Opitutaceae bacterium TAV2] gi|224801658|gb|EEG19953.1| (Formate-C-acetyltransferase)-activating enzyme [Opitutaceae bacterium TAV2] Length = 264 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 31/119 (26%) Query: 27 CRFS----GCNLWSGREQDRLSAQCRFCDTDFVGIQGTK--------------GGRYNVD 68 R + GC L +C +C + G + Sbjct: 20 IRTTLFLKGCPL-----------RCLWCHNPESMSPKPQYAAPVRPDDPPQLYGYTTTPE 68 Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPP 125 +L LI + + G L+GGEP Q L++A ++T+G PP Sbjct: 69 KLLPLICKDRAWYDATGGGITLSGGEPAFQPRFTEALLRAARAENIHTCLDTSGHAPPP 127 >gi|312795515|ref|YP_004028437.1| molybdenum cofactor biosynthesis protein A [Burkholderia rhizoxinica HKI 454] gi|312167290|emb|CBW74293.1| Molybdenum cofactor biosynthesis protein A [Burkholderia rhizoxinica HKI 454] Length = 372 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 32/131 (24%) Query: 28 RFSGCNLWSGREQ--DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQ 77 R + L R DR + +C +C D F+ +++ + + Sbjct: 40 RLAR-PLRDLRISVTDRCNFRCVYCMPRTVFGRDYPFL----PHSALLTFEEI-ERVARL 93 Query: 78 WITGEKEGRYCVLTGGEPLLQVDVP-LIQALN------KRGFEIAVETNGTIEP------ 124 ++ E LTGGEPLL+ + LI+ L R ++ + TNG + Sbjct: 94 FVAQGVEK--IRLTGGEPLLRKHLERLIERLAALRTPDARALDLTLTTNGALLARKARAL 151 Query: 125 -PQGIDWICVS 134 G+ + VS Sbjct: 152 KDAGLTRVTVS 162 >gi|296876029|ref|ZP_06900085.1| pyruvate formate-lyase activating enzyme [Streptococcus parasanguinis ATCC 15912] gi|296432940|gb|EFH18731.1| pyruvate formate-lyase activating enzyme [Streptococcus parasanguinis ATCC 15912] Length = 264 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 21/99 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT + R D L + + + G Sbjct: 33 VF--LQGC-----------QMRCQYCHNPDT-WAMETNKSRERTVDDVLEEALRYRGFWG 78 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 +K G ++GGE LLQ+D + L + G ++T Sbjct: 79 QKGG--ITVSGGEALLQIDFLIALFTKAQELGIHCTLDT 115 >gi|254366274|ref|ZP_04982318.1| hypothetical transferase [Mycobacterium tuberculosis str. Haarlem] gi|134151786|gb|EBA43831.1| hypothetical transferase [Mycobacterium tuberculosis str. Haarlem] Length = 788 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 18/112 (16%) Query: 27 CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQL 70 RF GC G D C C F G Sbjct: 77 LRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYAITAAQ 136 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRG-FEIAVETNG 120 + + + + E E + +GGEP + + + A R + + TNG Sbjct: 137 CERMLDTLVAAEGEPEVAMFSGGEPTIHKQLLEFVDAAQARPVKTVIINTNG 188 >gi|153005220|ref|YP_001379545.1| radical SAM domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152028793|gb|ABS26561.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5] Length = 450 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 32/98 (32%), Gaps = 21/98 (21%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYC 88 GCNL C +C + + + + GE Y Sbjct: 99 GCNL-----------ACTYC--YQEVFDPSASALMPPEVVEAFFAYVDAHHAGETPRPYV 145 Query: 89 VLTGGEPL-----LQVDV-PLIQALNKRGFEIAVETNG 120 L GGEPL + ++ RG E+AV TNG Sbjct: 146 TLFGGEPLRDTPAHHDRIGRFLRGAAARGLELAVVTNG 183 >gi|7963892|gb|AAF71374.1|AF262989_1 iron-sulfur modifier protein [Klebsiella pneumoniae] Length = 395 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 26/102 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC--V 89 CNL CR+C + T + + +L I R V Sbjct: 35 CNL-----------ACRYC---YYPQDETPVNKMDDARLEQFIRRYIAAQPAGAREINFV 80 Query: 90 LTGGEPLLQVDVPLIQ---ALNKR----GFEI--AVETNGTI 122 GGEPLL + + AL R G I +++TNGT+ Sbjct: 81 WQGGEPLL-AGLSFYKKALALQARYAPDGVTISNSLQTNGTL 121 >gi|125974200|ref|YP_001038110.1| radical SAM family protein [Clostridium thermocellum ATCC 27405] gi|125714425|gb|ABN52917.1| Radical SAM [Clostridium thermocellum ATCC 27405] Length = 491 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 9/90 (10%) Query: 33 NLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 E + +C+ C + + + +Q+ ++++ +T Sbjct: 135 PYSCSIEITKQCDLRCKHC---YGEAGAMRNTQLTEEQIYSILDKL----SDGCNSVSIT 187 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 GG+P+ + +I+ RGFE + TNG Sbjct: 188 GGDPMCHPKIKEIIKYSIARGFETTLITNG 217 >gi|309798990|ref|ZP_07693247.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus infantis SK1302] gi|308117394|gb|EFO54813.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus infantis SK1302] Length = 264 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 21/99 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT + R D L + + + G Sbjct: 33 VF--LQGC-----------QMRCQYCHNPDT-WAMETNKSRVRTVDDVLEEALRYRGFWG 78 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 +K G ++GGE LLQ+D + L ++G ++T Sbjct: 79 DKGG--ITVSGGEALLQIDFLIALFTKAKEKGIHCTLDT 115 >gi|169343771|ref|ZP_02864770.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens C str. JGS1495] gi|169298331|gb|EDS80421.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens C str. JGS1495] Length = 331 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 10/85 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D+ + +C +C +D++ +++E G K+ R LTGGEPL++ Sbjct: 26 DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 82 Query: 101 VPLIQALNKRGFEIAVE-----TNG 120 + + + +E TNG Sbjct: 83 I--VDLIKNINKIPEIEEICSTTNG 105 >gi|170287909|ref|YP_001738147.1| radical SAM domain-containing protein [Thermotoga sp. RQ2] gi|170175412|gb|ACB08464.1| Radical SAM domain protein [Thermotoga sp. RQ2] Length = 482 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 21/92 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + G+ G K + D++ D++++ G ++T Sbjct: 120 CNL-----------NCVGC---YAGLYGRKYE-LSHDEVRDILKQANDLGIYFF---IIT 161 Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 GGEP + + + F + +NGT+ Sbjct: 162 GGEPFFWPHLMDIFEEFKDSYFLVY--SNGTL 191 >gi|114707677|ref|ZP_01440572.1| molybdenum cofactor biosynthesis protein A [Fulvimarina pelagi HTCC2506] gi|114536921|gb|EAU40050.1| molybdenum cofactor biosynthesis protein A [Fulvimarina pelagi HTCC2506] Length = 372 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 26/152 (17%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D +F+ K +++L L G K+ R LTGGEPL+ Sbjct: 61 DRCDFRCVYCMAEDMEFL----PKRDLLTLEELDRLSTTFIAKGVKKLR---LTGGEPLV 113 Query: 98 QVDVP-LIQALNKRGFEIAVE-----TNGT-------IEPPQGIDWICVSPKAGCDLK-- 142 + ++ LI++L++ A+E TNG+ G+ + VS K Sbjct: 114 RKNIMYLIRSLSRHLETGALEELTLTTNGSQLKRFAKDLADAGVRRLNVSVDTLDADKFR 173 Query: 143 -IKGGQELKLVFPQVNVSPENYIGFDFERFSL 173 I ELK V ++ + E + +L Sbjct: 174 RITRWGELKKVMEGIDAAQEAGLHVKLNAVAL 205 >gi|15643587|ref|NP_228633.1| astB/chuR-related protein [Thermotoga maritima MSB8] gi|4981355|gb|AAD35906.1|AE001749_9 astB/chuR-related protein [Thermotoga maritima MSB8] Length = 482 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 21/92 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + G+ G K + D++ D++++ G ++T Sbjct: 120 CNL-----------NCVGC---YAGLYGRKYE-LSHDEVRDILKQANDLGIYFF---IIT 161 Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 GGEP + + + F + +NGT+ Sbjct: 162 GGEPFFWPHLMDIFEEFKDSYFLVY--SNGTL 191 >gi|332186015|ref|ZP_08387761.1| molybdenum cofactor biosynthesis protein A [Sphingomonas sp. S17] gi|332013830|gb|EGI55889.1| molybdenum cofactor biosynthesis protein A [Sphingomonas sp. S17] Length = 339 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 16/106 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +CR+C + ++D++A + E G R L+GGEPL++ D Sbjct: 31 DRCDLRCRYC-MAEQMTFLPRAKLLSLDEIAIIAERFIARGVTRIR---LSGGEPLVRRD 86 Query: 101 VP-LIQAL---NKRGF-EIAVETNGTI-------EPPQGIDWICVS 134 V L++ L G E+ + TNGT GI I VS Sbjct: 87 VADLVRRLGTHVGHGLDELTMTTNGTRLAEHADTLASAGIRRINVS 132 >gi|289596153|ref|YP_003482849.1| Wyosine base formation domain protein [Aciduliprofundum boonei T469] gi|289533940|gb|ADD08287.1| Wyosine base formation domain protein [Aciduliprofundum boonei T469] Length = 308 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 +E+ E LTG EP L + LI+ +KRGF + TNGT+ Sbjct: 112 LEKWKEAMEPRHVAISLTG-EPTLYPRLGELIEEYHKRGFTTFLVTNGTMP 161 >gi|240171060|ref|ZP_04749719.1| putative transferase [Mycobacterium kansasii ATCC 12478] Length = 785 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 13/103 (12%) Query: 31 GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G D C C F G + + + + Sbjct: 90 GCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYALTVSQCEKMLDALV 149 Query: 80 TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNG 120 E E + +GGEP + + + A R + + + TNG Sbjct: 150 AAEGEPEVVMFSGGEPTIHKQILEFVDAAQARPIKTVIINTNG 192 >gi|225619467|ref|YP_002720724.1| molybdenum cofactor biosynthesis protein A [Brachyspira hyodysenteriae WA1] gi|225214286|gb|ACN83020.1| molybdenum cofactor biosynthesis protein A [Brachyspira hyodysenteriae WA1] Length = 265 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +C +C + I+ T +Q+ ++++E G K+ R +TG Sbjct: 10 NYIRVSVTDRCNLRCVYCMPEEGIIKKTHSQILTYEQIYNVVKEASELGVKKVR---ITG 66 Query: 93 GEPLLQVDV 101 GEPL++ ++ Sbjct: 67 GEPLVRKNI 75 >gi|7963896|gb|AAF71376.1|AF262990_1 iron-sulfur modifier protein [Klebsiella pneumoniae] Length = 395 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 26/102 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC--V 89 CNL CR+C + T + + +L I R V Sbjct: 35 CNL-----------ACRYC---YYPQDETPVNKMDDARLEQFIRRYIAAQPAGAREINFV 80 Query: 90 LTGGEPLLQVDVPLIQ---ALNKR----GFEI--AVETNGTI 122 GGEPLL + + AL R G I +++TNGT+ Sbjct: 81 WQGGEPLL-AGLSFYKKALALQARYAPDGVTISNSLQTNGTL 121 >gi|114710|sp|P20714|ANSME_KLEAE RecName: Full=Anaerobic sulfatase-maturating enzyme; Short=AnSME; AltName: Full=Arylsulfatase-activating protein; AltName: Full=Ser-type sulfatase-activating enzyme gi|149165|gb|AAA25050.1| atsB protein [Klebsiella aerogenes] Length = 405 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 26/102 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC--V 89 CNL CR+C + T + + +L I R V Sbjct: 35 CNL-----------ACRYC---YYPQDETPVNKMDDARLEQFIRRYIAAQPAGAREINFV 80 Query: 90 LTGGEPLLQVDVPLIQ---ALNKR----GFEI--AVETNGTI 122 GGEPLL + + AL R G I +++TNGT+ Sbjct: 81 WQGGEPLL-AGLSFYKKALALQARYAPDGVTISNSLQTNGTL 121 >gi|14602168|ref|NP_148716.1| hypothetical protein APE_2598 [Aeropyrum pernix K1] gi|5106304|dbj|BAA81615.1| conserved hypothetical protein [Aeropyrum pernix K1] Length = 610 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 46/109 (42%), Gaps = 13/109 (11%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL--T 91 L + +R C +C + G +++Q+ ++ + + + + T Sbjct: 143 LVNIVVTNRCDLSCFYC-FFYAERAGYIYEP-SIEQIKFMVRQVARQRQGSDVHVNIQIT 200 Query: 92 GGEPLL-QVDVPLIQALNKRG-FEIAVETNG-------TIEPPQGIDWI 131 GGEP + + V +++A+ + G I + TNG PP ID++ Sbjct: 201 GGEPTVREDLVDVVKAIREAGAHYIQLNTNGINVARRYLDNPPGAIDYV 249 >gi|323703874|ref|ZP_08115508.1| molybdenum cofactor biosynthesis protein A [Desulfotomaculum nigrificans DSM 574] gi|323531162|gb|EGB21067.1| molybdenum cofactor biosynthesis protein A [Desulfotomaculum nigrificans DSM 574] Length = 325 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 20/107 (18%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +C +C Q ++++ +++ G ++ R +TG Sbjct: 10 NYLRISVTDRCNLRCVYCMPPEGVKQTPHWEILSLEEFGRVVDAASDIGIRKVR---ITG 66 Query: 93 GEPLLQVDV----------PLIQALNKRGFEIAVETNGTIEPPQGID 129 GEPL++ ++ PLI +I++ TNG + D Sbjct: 67 GEPLVRKNIIDLFRYIAANPLID-------DISITTNGILFADMAAD 106 >gi|322391329|ref|ZP_08064799.1| pyruvate formate-lyase activating enzyme [Streptococcus peroris ATCC 700780] gi|321145755|gb|EFX41146.1| pyruvate formate-lyase activating enzyme [Streptococcus peroris ATCC 700780] Length = 264 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 21/99 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT + R D L + + + G Sbjct: 33 VF--LQGC-----------QMRCQYCHNPDT-WAMETNKSRVRTVDDVLEEALRYRGFWG 78 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 +K G ++GGE LLQ+D + L ++G ++T Sbjct: 79 DKGG--ITVSGGEALLQIDFLIALFTKAKEKGIHCTLDT 115 >gi|289641945|ref|ZP_06474100.1| Radical SAM domain protein [Frankia symbiont of Datisca glomerata] gi|289508245|gb|EFD29189.1| Radical SAM domain protein [Frankia symbiont of Datisca glomerata] Length = 410 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 22/76 (28%), Gaps = 7/76 (9%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A + Q R D I E + + +L Sbjct: 44 CNLTCDYCYVYQMADQTW------HSQPVTMSRSTAASAIDRIAEHASSHHLPLIHVILH 97 Query: 92 GGEPLLQVDVPLIQAL 107 GGEPLL I L Sbjct: 98 GGEPLL-AGREFISYL 112 >gi|208434680|ref|YP_002266346.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori G27] gi|208432609|gb|ACI27480.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori G27] Length = 293 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 20/146 (13%) Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIA--VETN 119 +D + + ++ G K+ R +TGGEPLL+ I L+ E+A + TN Sbjct: 13 ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDEFIAKLHAYNKEVALVLSTN 69 Query: 120 GTIEPPQGID-------WICV---SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169 G + D + V S K+ LKI LK + S + Sbjct: 70 GFLLKKMAKDLKNAGLSQVNVSLDSLKSDRVLKISQKDALKNTLEGIEESLRVGLKLKLN 129 Query: 170 RFSLQPMDGPFLEENTNLAISYCFQN 195 + +E L + Y + Sbjct: 130 TVV---IKSVNDDEILEL-LEYAKKR 151 >gi|254255226|ref|ZP_04948542.1| Coenzyme PQQ biosynthesis protein E [Burkholderia dolosa AUO158] gi|124900963|gb|EAY71713.1| Coenzyme PQQ biosynthesis protein E [Burkholderia dolosa AUO158] Length = 376 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 9/91 (9%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 LW E R C FC + + + G + +I + G + Sbjct: 15 PLWLLAELTYRCPLHCAFC---YNPVDFASHGAELDTGTWRTVIRDARALGAAQ---IGF 68 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +GGEPL + D+ L++ GF + T+G Sbjct: 69 SGGEPLQRGDLEALVEHARALGFYTNLITSG 99 >gi|2626813|dbj|BAA23391.1| YfkA [Bacillus subtilis] Length = 154 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 13/92 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L +EE R +TGGEP+L + Sbjct: 45 RCEHCAVGYT-LQPKDPNALPIDLLLKRLEEI-----PRLRSISITGGEPMLSLKSVKEY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 VPL++ ++RG + +N T++ + +WI Sbjct: 99 VVPLLKYAHERGVRTQINSNLTLDI-ERYEWI 129 >gi|62286584|sp|Q9X758|ANSME_KLEPN RecName: Full=Anaerobic sulfatase-maturating enzyme; Short=AnSME; AltName: Full=Arylsulfatase-activating protein; AltName: Full=Ser-type sulfatase-activating enzyme gi|4586202|emb|CAB40960.1| arylsulfatase activating protein [Klebsiella pneumoniae] Length = 395 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 26/102 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC--V 89 CNL CR+C + T + + +L I R V Sbjct: 35 CNL-----------ACRYC---YYPQDETPVNKMDDARLEQFIRRYIAAQPAGAREINFV 80 Query: 90 LTGGEPLLQVDVPLIQ---ALNKR----GFEI--AVETNGTI 122 GGEPLL + + AL R G I +++TNGT+ Sbjct: 81 WQGGEPLL-AGLSFYKKALALQARYAPDGVTISNSLQTNGTL 121 >gi|330506877|ref|YP_004383305.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6] gi|328927685|gb|AEB67487.1| radical SAM domain protein [Methanosaeta concilii GP-6] Length = 364 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 25/97 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C G G + D++ E +G T Sbjct: 17 CNL-----------RCSYCY-AHGGESRASMGWVTARRAIDVMAE-----CFDGFKIQFT 59 Query: 92 GGEPLLQVDVPLIQA----LNKRGFEI--AVETNGTI 122 GGEPLL ++ LI+ L++ G ++ V+TN T+ Sbjct: 60 GGEPLL--NLGLIERAVDYLDEMGLQVPCQVQTNATL 94 >gi|314934315|ref|ZP_07841674.1| molybdenum cofactor biosynthesis protein A [Staphylococcus caprae C87] gi|313652245|gb|EFS16008.1| molybdenum cofactor biosynthesis protein A [Staphylococcus caprae C87] Length = 341 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%) Query: 41 DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C + G + + ++ I E + +TGGEPLL+ Sbjct: 23 DRCNFRCDYCMPKEIFGDDFVFLPKEELLTFEEMTRISRIYAELGVKKIRITGGEPLLRR 82 Query: 100 DV-PLIQALNK-RGFE-IAVETNG 120 ++ LI+ LN+ G E I + TNG Sbjct: 83 NLYQLIEQLNEIEGIEDIGLTTNG 106 >gi|305663591|ref|YP_003859879.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230] gi|304378160|gb|ADM27999.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230] Length = 584 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 19/105 (18%) Query: 32 CNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77 C L G +R C +C F G ++D + +++ E Sbjct: 113 CPLNCGLCPLHKTHTALLNIVVTNRCDLSCWYC-FYFAERAGYVYEP-SIDDIVNMV-EA 169 Query: 78 WITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFE-IAVETNG 120 LTGGEP L + V +++ L + G I + T+G Sbjct: 170 LRKQPNIVLTVQLTGGEPTLREDLVDIVRKLRELGVRHIQLNTHG 214 >gi|260886563|ref|ZP_05897826.1| nitrite reductase heme biosynthesis J protein [Selenomonas sputigena ATCC 35185] gi|330839604|ref|YP_004414184.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185] gi|260863706|gb|EEX78206.1| nitrite reductase heme biosynthesis J protein [Selenomonas sputigena ATCC 35185] gi|329747368|gb|AEC00725.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185] Length = 398 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A+ + T+ R +D LAD + + Sbjct: 47 CNLKCRHCYMNSDAK------KYQNELTTEEARRFIDDLAD----------FRVPVLLFS 90 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GGEPLL+ D L + +G + TNGT+ Sbjct: 91 GGEPLLRPDFFELAEHAAAKGVRPTLSTNGTL 122 >gi|194291439|ref|YP_002007346.1| pyrroloquinoline quinone biosynthesis protein pqqe [Cupriavidus taiwanensis LMG 19424] gi|193225343|emb|CAQ71287.1| Quinoprotein ethanol dehydrogenase; PQQ dehydrogenase family [Cupriavidus taiwanensis LMG 19424] Length = 391 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R C FC D+ + Q D+ + G + Sbjct: 17 PLWLLAELTYRCPLHCAFCSNPVDYAR----HAEELDTAQWCDVFTQARALGAVQLG--- 69 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 L+GGEPLL+ D+ L++ GF + T+G Sbjct: 70 LSGGEPLLRKDLETLVRHARGLGFYTNLITSG 101 >gi|253700573|ref|YP_003021762.1| molybdenum cofactor biosynthesis protein A [Geobacter sp. M21] gi|251775423|gb|ACT18004.1| molybdenum cofactor biosynthesis protein A [Geobacter sp. M21] Length = 326 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 25/180 (13%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLT 91 N DR + +CR+C G++ + + L + E G ++ R +T Sbjct: 12 NYLRLSVTDRCNLRCRYC-MPEEGVEKLDHSQVLSYADLLRISTEAVAAGIEKIR---VT 67 Query: 92 GGEPLLQVDVPLIQALNKRG-----FEIAVETNGTI--EPPQGIDWICV--------SPK 136 GGEPL++ + I L + G E+ + TNG + E QG+ V S K Sbjct: 68 GGEPLVRKGI--ISFLERLGALPGLKELVLTTNGLLLKEMAQGLREAGVQRLNISLDSLK 125 Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196 I G ELK V + + + GF + ++ M G +E + + + P Sbjct: 126 PEIFASITRGGELKRVLDGLEAAEK--AGFPPHKINVVVMRGINDDEILDF-VELTMKRP 182 >gi|168207240|ref|ZP_02633245.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens E str. JGS1987] gi|170661412|gb|EDT14095.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens E str. JGS1987] Length = 331 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 10/85 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D+ + +C +C +D++ +++E G K+ R LTGGEPL++ Sbjct: 26 DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 82 Query: 101 VPLIQALNKRGFEIAVE-----TNG 120 + + + +E TNG Sbjct: 83 I--VDLIKNINKIPEIEEICLTTNG 105 >gi|18310772|ref|NP_562706.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens str. 13] gi|20141618|sp|Q9WX96|MOAA_CLOPE RecName: Full=Molybdenum cofactor biosynthesis protein A gi|18145453|dbj|BAB81496.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens str. 13] Length = 323 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 10/85 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D+ + +C +C +D++ +++E G K+ R LTGGEPL++ Sbjct: 18 DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 74 Query: 101 VPLIQALNKRGFEIAVE-----TNG 120 + + + +E TNG Sbjct: 75 I--VDLIKNINKIPEIEEICLTTNG 97 >gi|219669369|ref|YP_002459804.1| radical SAM protein [Desulfitobacterium hafniense DCB-2] gi|219539629|gb|ACL21368.1| Radical SAM domain protein [Desulfitobacterium hafniense DCB-2] Length = 332 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 4/75 (5%) Query: 49 FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL 107 +CD + N + L+E+ G + + +GGEPLL+ D+ L+ Sbjct: 14 YCDHCYRDAGCQAEEELNTAEAKTLLEQIARAG---FKIMIFSGGEPLLRPDIVELVAYA 70 Query: 108 NKRGFEIAVETNGTI 122 G TNGT+ Sbjct: 71 TSLGLRPVFGTNGTL 85 >gi|303245812|ref|ZP_07332095.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ] gi|302493075|gb|EFL52940.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ] Length = 373 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR + G ++ + LI+ TG + T Sbjct: 37 CNLAC--------KHCR----AEACLDPWPGE-FDTAEAKALIDTFPETG---SPIIIFT 80 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ D+ L++ R + NGT+ Sbjct: 81 GGEPLLRPDIFDLVRHARSRDLRCVMAPNGTL 112 >gi|257056309|ref|YP_003134141.1| hopanoid biosynthesis associated radical SAM protein HpnH [Saccharomonospora viridis DSM 43017] gi|256586181|gb|ACU97314.1| hopanoid biosynthesis associated radical SAM protein HpnH [Saccharomonospora viridis DSM 43017] Length = 334 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 20/114 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C R V+Q IEE + Sbjct: 36 CNL-----------SCPGCG-KIQHPASVLKQRMPVEQAVAAIEECG------APMVSIA 77 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144 GGEPL+ D+ ++ +R + + TN + + ID + + P I Sbjct: 78 GGEPLMHPDIDTMVNEFVRRKKYVFLCTNAAL-LRRKIDKLDLKPSRYFAFAIH 130 >gi|295090053|emb|CBK76160.1| Pyruvate-formate lyase-activating enzyme [Clostridium cf. saccharolyticum K10] Length = 231 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 6/80 (7%) Query: 46 QCRFCDTDF--VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---D 100 C C TDF + G ++L ++ + E G L+GGE + Q Sbjct: 14 ACGSC-TDFCISNARSIVGEEMEAEELVRILRQDRQFYEDSGGGVTLSGGEAMAQDMDYM 72 Query: 101 VPLIQALNKRGFEIAVETNG 120 L+ L G + ++T G Sbjct: 73 ENLLVRLQSEGIPVNMDTCG 92 >gi|182625681|ref|ZP_02953450.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens D str. JGS1721] gi|177909083|gb|EDT71558.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens D str. JGS1721] Length = 331 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 10/85 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D+ + +C +C +D++ +++E G K+ R LTGGEPL++ Sbjct: 26 DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 82 Query: 101 VPLIQALNKRGFEIAVE-----TNG 120 V + + +E TNG Sbjct: 83 V--VDLIKNINKIPEIEEICLTTNG 105 >gi|148269248|ref|YP_001243708.1| radical SAM domain-containing protein [Thermotoga petrophila RKU-1] gi|147734792|gb|ABQ46132.1| Radical SAM domain protein [Thermotoga petrophila RKU-1] Length = 482 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 21/92 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + G+ G K + D++ D++++ G ++T Sbjct: 120 CNL-----------NCVGC---YAGLYGRKYE-LSHDEVRDILKQANDLGIYFF---IIT 161 Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 GGEP + + + F + +NGT+ Sbjct: 162 GGEPFFWPHLMDIFEEFKDSYFLVY--SNGTL 191 >gi|108761286|ref|YP_628582.1| radical SAM domain-containing protein [Myxococcus xanthus DK 1622] gi|108465166|gb|ABF90351.1| radical SAM domain protein [Myxococcus xanthus DK 1622] Length = 262 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 9/61 (14%) Query: 90 LTGGEPLLQVDVP-LIQALNKRGF--EIAVETNGTIEPP------QGIDWICVSPKAGCD 140 LTGGEP L D+P ++ A+ G +++V TNG + + +D + +S Sbjct: 65 LTGGEPFLHPDLPAVLDAVRASGISPQVSVTTNGFLAQSAPDAVYERLDRMTLSVYTSAP 124 Query: 141 L 141 L Sbjct: 125 L 125 >gi|78044984|ref|YP_361022.1| radical SAM domain-containing protein [Carboxydothermus hydrogenoformans Z-2901] gi|77997099|gb|ABB15998.1| radical SAM domain protein [Carboxydothermus hydrogenoformans Z-2901] Length = 459 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 25/109 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + G + KG + ++L L E G + VL+ Sbjct: 125 CNL-----------GCTGC---WAG-KYQKGPELSFERLDRLFNEAKELGIY---FIVLS 166 Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGIDWIC----VSP 135 GGEPL+ L + N F TNGT+ + D I SP Sbjct: 167 GGEPLMYERLFELFEKHNDMAFMAY--TNGTLIDEKMADKIAKVGNFSP 213 >gi|330810983|ref|YP_004355445.1| molybdenum cofactor biosynthesis protein A [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379091|gb|AEA70441.1| molybdenum cofactor biosynthesis protein A [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 322 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 29/167 (17%) Query: 46 QCRFC--DTDF-VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 C +C D V Q +A LIE I + +TGGEPL+ + Sbjct: 24 ACTYCVPDGKRLVAAQDELSAEAMARGVAYLIEAAGIERLR------ITGGEPLVSPKLE 77 Query: 103 -LIQALNKRGFE-IAVETNG---TIEPPQGID---------WICVSPKAGCDLKIKGGQE 148 + A+ + G E I++ TNG + P +D + P A + G + Sbjct: 78 RFMTAVGQMGLEDISLTTNGQLLAKKLPLLVDAGIRRINVSLDTLDPAAFRSIA--RGGD 135 Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 L V + + + + ++ P+ G L++ L + YC + Sbjct: 136 LATVLDGMEQARAAGMKI---KVNMVPLRGQNLDQVMPL-LEYCLER 178 >gi|289523797|ref|ZP_06440651.1| putative pyruvate formate-lyase 1 activating enzyme [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502941|gb|EFD24105.1| putative pyruvate formate-lyase 1 activating enzyme [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 357 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Query: 88 CVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125 +GG+PL+Q + + L++ KRGF +ET G P Sbjct: 172 VTFSGGDPLVQHEFTLELLKESKKRGFHTCLETEGHAAWP 211 >gi|189465169|ref|ZP_03013954.1| hypothetical protein BACINT_01514 [Bacteroides intestinalis DSM 17393] gi|189437443|gb|EDV06428.1| hypothetical protein BACINT_01514 [Bacteroides intestinalis DSM 17393] Length = 356 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 14/83 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C+ C +D + + + I+ ++T Sbjct: 39 CNL-----------HCKHCGSDCKRMAAVED--MPAEDFLRTIDSITPYVNPNKVSIIIT 85 Query: 92 GGEPLLQVDVPLI-QALNKRGFE 113 GGEPL++ D+ + AL +RG+ Sbjct: 86 GGEPLMREDLEKVGLALYRRGYP 108 >gi|94264027|ref|ZP_01287827.1| Radical SAM [delta proteobacterium MLMS-1] gi|93455538|gb|EAT05725.1| Radical SAM [delta proteobacterium MLMS-1] Length = 351 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 16/92 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR ++ ++ + ++++ VL+ Sbjct: 16 CNLNC--------VHCR----SSSELEAKGHPDFDFTEAKRILDD---ITSYAQPVVVLS 60 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ DV + ++G + + TNGT+ Sbjct: 61 GGEPLLRDDVFDIAAYGTEKGLRMCLATNGTL 92 >gi|329766702|ref|ZP_08258245.1| radical SAM domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329136957|gb|EGG41250.1| radical SAM domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 554 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 13/130 (10%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD--QLADLIEEQWITGEKEGRYCVLT 91 L + +R C +C +V Y D Q+ +++ G +T Sbjct: 109 LANMIVTNRCDLTCWYC-FFYVKKGLEGAYMYEPDHTQVRGMMKTLKAERPIPGNSIQIT 167 Query: 92 GGEPLLQVDVP-LIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEP+L+ D+ +I+ + + G + + TNG + P+A ++++ G L Sbjct: 168 GGEPMLREDIADVIKIMKEEGVDHVQMNTNGIRHA--------MDPEAAREVRLAGCNNL 219 Query: 150 KLVFPQVNVS 159 L F V Sbjct: 220 YLSFDGVTAR 229 >gi|323701819|ref|ZP_08113489.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574] gi|323533123|gb|EGB22992.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574] Length = 330 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 18/96 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL+ A C + D G++ N ++ LI++ E + + + Sbjct: 11 CNLYC--------AHC-YRD---AGVKAE--EELNTEEGKRLIDQ---IAEAGFKIMIFS 53 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 GGEPL++ D+ L+ +G TNGT+ P+ Sbjct: 54 GGEPLMRPDIFELVAYAKSKGLRPVFGTNGTLITPE 89 >gi|257066928|ref|YP_003153184.1| molybdenum cofactor biosynthesis protein A [Anaerococcus prevotii DSM 20548] gi|256798808|gb|ACV29463.1| molybdenum cofactor biosynthesis protein A [Anaerococcus prevotii DSM 20548] Length = 312 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 14/89 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C++C +G G K R+ ++ +++E I R LTGGEP + Sbjct: 18 DRCNFRCKYC----MGEDGIKLLRHEDILTFEEIVETAQIMAGLGIRKIRLTGGEPFARR 73 Query: 100 DV-PLIQALNKRGFEIAVE-----TNGTI 122 V LI+ L++ +E TNG++ Sbjct: 74 GVMDLIKKLSQIP---EIEDLAITTNGSM 99 >gi|254281851|ref|ZP_04956819.1| putative oxygen-independent coproporphyrinogen III oxidase [gamma proteobacterium NOR51-B] gi|219678054|gb|EED34403.1| putative oxygen-independent coproporphyrinogen III oxidase [gamma proteobacterium NOR51-B] Length = 383 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 10/106 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + G + Y LAD+ ++ + + Sbjct: 9 PLALYVHIPWCERKCPYCDFNSHEGFKPDLEPVYVAALLADIEAQEQWIDSRPIASIFIG 68 Query: 92 GGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEPPQGI 128 GG P L + + L G EI +ETN G+ E + I Sbjct: 69 GGTPSLFSADAIGKLLDGVARVAHLPAGTEITLETNPGSAEASRYI 114 >gi|153869921|ref|ZP_01999428.1| heme biosynthesis protein [Beggiatoa sp. PS] gi|152073610|gb|EDN70569.1| heme biosynthesis protein [Beggiatoa sp. PS] Length = 482 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 30/134 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C + D+L +++++ G + + Sbjct: 143 CNLNC--------VHCYW--------PNHFTRHIPKDKLFNILDQLSDMG---SLHLSFS 183 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 GGE LL + + +++ K F + + TNGT+ +S K +L+ E++ Sbjct: 184 GGESLLHPNFIEIVRYARKLDFSVTIMTNGTL----------LSKKLIYELRQLAVAEIQ 233 Query: 151 LVFPQVNVSPENYI 164 + ++ S + I Sbjct: 234 VSLYSMDASVHDAI 247 >gi|124267773|ref|YP_001021777.1| pyrroloquinoline quinone biosynthesis protein PqqE [Methylibium petroleiphilum PM1] gi|124260548|gb|ABM95542.1| coenzyme PQQ synthesis protein E [Methylibium petroleiphilum PM1] Length = 414 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 +W E + C FC T++ G G + + E G + + Sbjct: 20 PMWLLAELTYKCPLHCVFCSNPTNYADHLGEIG----TEDWKRVFREARQMGAVQLGF-- 73 Query: 90 LTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 +GGEPLL+ D+ L+ + G+ + T+G Sbjct: 74 -SGGEPLLRDDLEELVAEARQLGYYTNLITSG 104 >gi|301627665|ref|XP_002942990.1| PREDICTED: molybdenum cofactor biosynthesis protein 1-like [Xenopus (Silurana) tropicalis] Length = 649 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 15/113 (13%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGT-KGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 N ++ + +C++C G+Q T K ++ L G + R LT Sbjct: 73 NYLRISLTEKCNLRCQYC-MPEEGVQLTPKSELLTTQEIVALARLFVQEGVNKIR---LT 128 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG---TIEPP----QGIDWICVS 134 GGEPL++ D V ++ L K G + IA+ TNG + P G+D + +S Sbjct: 129 GGEPLIRPDVVDIVAQLRKLEGLKTIALTTNGINLARQLPKLKDAGLDVLNIS 181 >gi|225026051|ref|ZP_03715243.1| hypothetical protein EUBHAL_00290 [Eubacterium hallii DSM 3353] gi|224956626|gb|EEG37835.1| hypothetical protein EUBHAL_00290 [Eubacterium hallii DSM 3353] Length = 304 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 8/94 (8%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118 +G V + D++ + + E+ G L+GGE L Q D L+ A + G ET Sbjct: 108 EGEEKTVQGVLDVVLQDKVFYEESGGGITLSGGEMLYQPDFALQLLLAAKEEGLHTCCET 167 Query: 119 NGTI------EPPQGIDWICVSPKAGCDLKIKGG 146 G + + + +D+I K K K G Sbjct: 168 TGFLKTELFAKIIEQVDYILFDMKHWNSKKHKEG 201 >gi|168210846|ref|ZP_02636471.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens B str. ATCC 3626] gi|170711112|gb|EDT23294.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens B str. ATCC 3626] Length = 331 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 10/85 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D+ + +C +C +D++ +++E G K+ R LTGGEPL++ Sbjct: 26 DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 82 Query: 101 VPLIQALNKRGFEIAVE-----TNG 120 V + + +E TNG Sbjct: 83 V--VDLIKNINKIPEIEEICLTTNG 105 >gi|116695408|ref|YP_840984.1| molybdopterin biosynthesis protein [Ralstonia eutropha H16] gi|113529907|emb|CAJ96254.1| molybdopterin biosynthesis protein [Ralstonia eutropha H16] Length = 381 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 22/97 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 D+ + +C +C D F+ + R + +L ++ G ++ R LTG Sbjct: 59 DQCNFRCTYCMPKERFGRDYPFLSPE----QRLSDAELLRIVRAFVGLGVEKVR---LTG 111 Query: 93 GEPLLQVDVP-LIQA------LNKRGFEIAVETNGTI 122 GEPLL+ + L++ L+ R E+A+ TNG++ Sbjct: 112 GEPLLRKGIESLVERIAAMRTLDGRQVEVAMTTNGSL 148 >gi|110798850|ref|YP_696474.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens ATCC 13124] gi|123148649|sp|Q0TPG6|MOAA_CLOP1 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|110673497|gb|ABG82484.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens ATCC 13124] Length = 323 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 10/85 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D+ + +C +C +D++ +++E G K+ R LTGGEPL++ Sbjct: 18 DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 74 Query: 101 VPLIQALNKRGFEIAVE-----TNG 120 V + + +E TNG Sbjct: 75 V--VDLIKNINKIPEIEEICLTTNG 97 >gi|104780794|ref|YP_607292.1| molybdenum cofactor biosynthesis protein A [Pseudomonas entomophila L48] gi|95109781|emb|CAK14486.1| putative molybdenum cofactor biosynthesis protein A [Pseudomonas entomophila L48] Length = 322 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 27/166 (16%) Query: 46 QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP- 102 C +C D + D LA + E +TGGEPL+ + Sbjct: 24 ACTYCVPDGKRLV---AAQDELTADALARGVAYLVEAAGIERLR--ITGGEPLISPRLEA 78 Query: 103 LIQALNKRGFE-IAVETNG---TIEPP---------QGIDWICVSPKAGCDLKIKGGQEL 149 ++A+ G E I++ TNG + + P + + P A + G +L Sbjct: 79 FLKAVAGLGLEDISLTTNGQLLSRKLPLLREAGIRRLNVSLDTLDPGAFRSIA--RGGDL 136 Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 V + + + + ++ PM G L++ L + YC Q Sbjct: 137 ASVLAGMEQASAAGMAI---KVNMVPMRGQNLDQVVPL-LDYCLQR 178 >gi|311897847|dbj|BAJ30255.1| hypothetical protein KSE_44720 [Kitasatospora setae KM-6054] Length = 793 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 26/105 (24%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL----IEEQWITGEKEGRY 87 C+L A + ++ R D++ + I E T + Sbjct: 18 CDLACDHCYVYEHADTSW----------SRKARAASDEVLERTAGRIGEHARTHRLPAVH 67 Query: 88 CVLTGGEPLL----------QVDVPLIQALNKRGFEIAVETNGTI 122 VL GGEPLL ++ + A I TNG + Sbjct: 68 VVLHGGEPLLAGPERLRRAAELLRAALPAGCALDLRIH--TNGVL 110 >gi|242371916|ref|ZP_04817490.1| molybdenum (Mo2+) cofactor biosynthesis protein A [Staphylococcus epidermidis M23864:W1] gi|242350423|gb|EES42024.1| molybdenum (Mo2+) cofactor biosynthesis protein A [Staphylococcus epidermidis M23864:W1] Length = 340 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D DFV + K D++ + G K+ R +TGG Sbjct: 22 DRCNFRCDYCMPKEIFGD-DFVFL--PKDELLTFDEMTRISRIYAELGVKKIR---ITGG 75 Query: 94 EPLLQVDV-PLIQALNK-RGFE-IAVETNG 120 EPLL+ ++ LI+ LN+ G E I + TNG Sbjct: 76 EPLLRRNLYQLIEQLNEIEGIEDIGLTTNG 105 >gi|254372721|ref|ZP_04988210.1| hypothetical protein FTCG_00288 [Francisella tularensis subsp. novicida GA99-3549] gi|151570448|gb|EDN36102.1| hypothetical protein FTCG_00288 [Francisella novicida GA99-3549] Length = 361 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 16/92 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R S+ C + ++ ++ +I+ VL+ Sbjct: 16 CNLKCV--HCRSSSDC----------EVLGHPDFSTEEGFRIIDSIVAFA---NPVLVLS 60 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ D+ L + +G +A+ TNG++ Sbjct: 61 GGEPLLRTDIFELAEYGTNKGLRMALATNGSL 92 >gi|86742050|ref|YP_482450.1| radical SAM family protein [Frankia sp. CcI3] gi|86568912|gb|ABD12721.1| Radical SAM [Frankia sp. CcI3] Length = 374 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 25/133 (18%) Query: 32 CNLWSGREQDRLSAQCR-FCDTDFV--GIQGTKGGRYNVDQLADLIEEQWI-TGEKEGRY 87 CNL +C + D+ + + + +++ L++E TG E Y Sbjct: 23 CNLTC--------RECWMYGDSAAESGWLADVRRDQMSLEMWTALVDELAADTGTPETTY 74 Query: 88 CVLTGGEPLLQVD-VPLIQALNKRGFEIAVE--TNGTIE-------PPQGIDWICVS--- 134 + GGEPL+ V L++ +R ++ TNGT+ GID + +S Sbjct: 75 LTMMGGEPLMHDHAVELMRIAKERLPSCNLDMSTNGTLLDRHAAGIVASGIDDVYLSVDG 134 Query: 135 PKAGCDLKIKGGQ 147 P + I+G Sbjct: 135 PSPEVNDPIRGRN 147 >gi|78044002|ref|YP_359727.1| putative pyruvate formate-lyase activating enzyme [Carboxydothermus hydrogenoformans Z-2901] gi|77996117|gb|ABB15016.1| putative pyruvate formate-lyase activating enzyme [Carboxydothermus hydrogenoformans Z-2901] Length = 281 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 36/131 (27%) Query: 22 RVAVFCRFSGCNLWS------------------------------GREQDRLSAQCRFCD 51 R+A+F GCNL + A C+ CD Sbjct: 20 RMAIF--LQGCNLDCLYCHNPETQKYCQNCGRCVEQCPAGALTNLDGKVTWDKAICQGCD 77 Query: 52 TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNK 109 + + + + DL+ + E +GGE LQ D L + L + Sbjct: 78 RCLEVCPHSSTPKTTLWEAEDLVA-YILENEVFLDGVTFSGGECTLQADFILEVSKKLKE 136 Query: 110 R-GFEIAVETN 119 + + V+TN Sbjct: 137 KSNLTVFVDTN 147 >gi|313897595|ref|ZP_07831137.1| radical SAM domain protein [Clostridium sp. HGF2] gi|312957547|gb|EFR39173.1| radical SAM domain protein [Clostridium sp. HGF2] Length = 287 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 61/175 (34%), Gaps = 29/175 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC K R +V Q + +I E + + Sbjct: 14 CNL-----------SCSFC-----IQNQRKPRRMSVAQFSHVIREIKPYTGHVYLHVL-- 55 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE-- 148 GEPL D+ +Q +++ ++ + TNGT+ D + S ++ + E Sbjct: 56 -GEPLSHPDLKTFLQICDEQEMQVNLTTNGTL-LNACRDVLMNSRLRQVNVSLHSFPEHE 113 Query: 149 ----LKLVFPQVNVSPENYIGFDFERFSLQ--PMDGPFLEENTNLAISYCFQNPK 197 L+ VF + + + +S+Q + G L Y +P+ Sbjct: 114 QPQYLEHVFSVCEELAQKGVHISYRLWSVQNGQLSGESTRLLQQLTQHYHISHPQ 168 >gi|312137070|ref|YP_004004407.1| radical sam domain protein [Methanothermus fervidus DSM 2088] gi|311224789|gb|ADP77645.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088] Length = 399 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 20/109 (18%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF GCNL +C C + V G + A+++ + + + Sbjct: 169 VF--THGCNL-----------RCPQC-QNHVIAFTAGGYLLKAQKTAEIL--LNLKNKYK 212 Query: 85 GRYCVLTGGEPLLQV--DVPLIQAL--NKRGFEIAVETNGTIEPPQGID 129 ++GGE L + LI+++ I V+TNGTI + ID Sbjct: 213 VNRIAISGGECTLNKKWLIELIKSIREKDENVHIHVDTNGTILTKKYID 261 >gi|241764970|ref|ZP_04762968.1| molybdenum cofactor biosynthesis protein A [Acidovorax delafieldii 2AN] gi|241365443|gb|EER60224.1| molybdenum cofactor biosynthesis protein A [Acidovorax delafieldii 2AN] Length = 378 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 25/138 (18%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D D+ + + +++ L G ++ R LTGGE Sbjct: 48 DRCNFRCNYCMPKEVFDKDYAYL--PHNALLSFEEITRLARLFMAHGVRKIR---LTGGE 102 Query: 95 PLLQVDV-PLIQALNKR------GFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ +V L+ L + ++ + TNG++ G+ + VS D Sbjct: 103 PLLRKNVEELVAQLAQLRTIDGTPPDLTLTTNGSLLARKARALREAGLSRVTVSLDGLDD 162 Query: 141 LKIKGGQELKLVFPQVNV 158 + ++ V Sbjct: 163 AVFRRMNDVDFPVEDVLA 180 >gi|220905081|ref|YP_002480393.1| Radical SAM domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869380|gb|ACL49715.1| Radical SAM domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 519 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 33/106 (31%), Gaps = 16/106 (15%) Query: 30 SGCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 GC G C C + G G L L + Sbjct: 88 QGCPFDCGLCPSHAQHTCTGLVEVTMRCNMACPVCYAGAGNVSGTLSADPDLNCLAVQMD 147 Query: 79 ITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKR---GFEIAVETNG 120 G ++GGEP ++ D+P I AL + G + V TNG Sbjct: 148 ALKTASGPCNVQISGGEPTVREDLPAIIALARERAFGL-VQVNTNG 192 >gi|261409709|ref|YP_003245950.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp. Y412MC10] gi|261286172|gb|ACX68143.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp. Y412MC10] Length = 334 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 8/91 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C G++ + + +++A ++ G + R LTGGEPL++ Sbjct: 22 DRCNLRCVYC-MPEEGMEFQPHDQIMSYEEIASIMRVLAPMGVSKVR---LTGGEPLVRK 77 Query: 100 DVP-LIQALNK-RGFE-IAVETNGTIEPPQG 127 D+ L+ + G + I++ TNG + P + Sbjct: 78 DLETLVHQIASIEGVQDISLTTNGIMLPSKA 108 >gi|163119675|ref|YP_080904.2| iron-binding, putative oxidoreductase [Bacillus licheniformis ATCC 14580] gi|145903185|gb|AAU25266.2| iron-binding, putative oxidoreductase [Bacillus licheniformis ATCC 14580] Length = 154 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 28/113 (24%) Query: 1 MKLYSIKEIFLTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59 MK+ +I I ++ GEG VF +GC ++ S Sbjct: 1 MKVMNI--IHDSIVDGEGLRT---VVF--LAGCPHMCEGCHNKQS------------WNI 41 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKR 110 G +VD++ + I + +GGEPLL + L + + + Sbjct: 42 NNGFDMSVDEVFEEIM------KNPLTNVTYSGGEPLLHAGELIELSEKIKQH 88 >gi|194333072|ref|YP_002014932.1| type 11 methyltransferase [Prosthecochloris aestuarii DSM 271] gi|194310890|gb|ACF45285.1| Methyltransferase type 11 [Prosthecochloris aestuarii DSM 271] Length = 1002 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 8/85 (9%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 +R + C C + +++ +L EE W G R LTGGEPL+ + Sbjct: 89 NRCNMACSHC---LFASSPEEQEELCAERILELAEEAWGAG---CRLFALTGGEPLVHRE 142 Query: 101 V-PLIQALNK-RGFEIAVETNGTIE 123 + +I+ L + + + TNG + Sbjct: 143 INTIIRGLLDLQDAHVVILTNGLLA 167 >gi|310778923|ref|YP_003967256.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926] gi|309748246|gb|ADO82908.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926] Length = 287 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 20/92 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC K +D ++ E + + Sbjct: 15 CNL-----------SCHFC-----PKSKRKLEYMKLDSFGKILREIKPFTDYIYLHVK-- 56 Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 GEPLL + GF++ + TNG+ Sbjct: 57 -GEPLLHPQLEEFLDLAYVYGFKVNITTNGSF 87 >gi|292655279|ref|YP_003535176.1| coenzyme PQQ synthesis protein E-like protein [Haloferax volcanii DS2] gi|291371422|gb|ADE03649.1| coenzyme PQQ synthesis protein E homolog [Haloferax volcanii DS2] Length = 402 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL+ C + G G + + LI++ + + Sbjct: 48 CNLYC--------EHC------YAGADLDPAQGELSTAEAKGLIDDL---AAYDVPVLLF 90 Query: 91 TGGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122 +GGEPL+ + V L+ G + TNGT+ Sbjct: 91 SGGEPLVREDLVELVDYATDAGIRAVLSTNGTL 123 >gi|284050768|ref|ZP_06380978.1| arylsulfatase regulator, AslB [Arthrospira platensis str. Paraca] gi|291572047|dbj|BAI94319.1| putative arylsulfatase regulatory protein [Arthrospira platensis NIES-39] Length = 410 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 25/111 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG--RYNVDQLADLIEEQWITGEKEGRYCV 89 CNL C +C + ++ +++D A IE K + Sbjct: 37 CNL-----------HCSYC---YAEVKTPGKEVPLFDIDTFAIAIERIAEYSRKSHIELI 82 Query: 90 LTGGEPLLQVD-------VPLIQALNKRGFEI--AVETNGTIEPPQGIDWI 131 GGEPLLQ D ++ L +G + +++N T+ + ID Sbjct: 83 FHGGEPLLQSDQWYDRACTLAVKILGDKGKTVDFGLQSNLTLLNDEHIDVF 133 >gi|153864667|ref|ZP_01997490.1| heme d1 biosynthesis protein [Beggiatoa sp. SS] gi|152145837|gb|EDN72509.1| heme d1 biosynthesis protein [Beggiatoa sp. SS] Length = 364 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 16/100 (16%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT--------GEKEG 85 L+ +R + +C C + + L ++ + G++ Sbjct: 29 LFQWHITERCNLRCAHC-----YQDNYARDELSFENLLTILVQYKTLLATLSERRGKRLS 83 Query: 86 RYCVLTGGEPLLQVD-VPLIQAL--NKRGFEIAVETNGTI 122 + +TGGEP + D + L++ +++ F A+ TNGT Sbjct: 84 AHITVTGGEPFARRDFLDLLEIFAAHRKLFSFAILTNGTF 123 >gi|51891252|ref|YP_073943.1| pyruvate formate lyase activating enzyme [Symbiobacterium thermophilum IAM 14863] gi|51854941|dbj|BAD39099.1| pyruvate formate lyase activating enzyme [Symbiobacterium thermophilum IAM 14863] Length = 255 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 23/107 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC L +CR+C DT +G V L + I+ Sbjct: 37 VFV--QGCPL-----------RCRYCHNPDT----WDPGQGAEVTVGSLIEEIQSYVPYM 79 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQ 126 + G ++GGEPLLQ D L + A++T+G PP+ Sbjct: 80 KFSGGGVTVSGGEPLLQPDFVADLFAECRRLFIHTALDTSG-FAPPE 125 >gi|322390044|ref|ZP_08063580.1| pyruvate formate-lyase activating enzyme [Streptococcus parasanguinis ATCC 903] gi|321143251|gb|EFX38693.1| pyruvate formate-lyase activating enzyme [Streptococcus parasanguinis ATCC 903] Length = 264 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 21/99 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT + R D L + + + G Sbjct: 33 VF--LQGC-----------QMRCQYCHNPDT-WAMETNKSRERTVDDVLEEALRYRGFWG 78 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 +K G ++GGE LLQ+D + L + G ++T Sbjct: 79 QKGG--ITVSGGEALLQIDFLIALFTKAQELGIHCTLDT 115 >gi|322420151|ref|YP_004199374.1| Radical SAM domain-containing protein [Geobacter sp. M18] gi|320126538|gb|ADW14098.1| Radical SAM domain protein [Geobacter sp. M18] Length = 409 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 18/94 (19%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C F+ R ++D ++ + L GGEPLL D Sbjct: 29 DRCNLRCSYC---FIDCTPANDSRMSLDTAKEIARLLIENSQYPQVALHLYGGEPLLVDD 85 Query: 101 ----------VPLIQALNKRGFEIA--VETNGTI 122 PL Q K G E+ + TNGT+ Sbjct: 86 AWISDFVGYARPLGQ---KHGKEVIFPLSTNGTL 116 >gi|303237453|ref|ZP_07324019.1| pyruvate formate-lyase 1-activating enzyme [Prevotella disiens FB035-09AN] gi|302482403|gb|EFL45432.1| pyruvate formate-lyase 1-activating enzyme [Prevotella disiens FB035-09AN] Length = 291 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 28/118 (23%) Query: 8 EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66 E F ++ G G VF GC + +C++C + Sbjct: 58 ETFGSVDGPGIRFI----VF--LKGC-----------AMRCQYC----HNPDTWEPNSDT 96 Query: 67 VDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETN 119 + +L+E+ G+ ++GGE LLQ+D LI+ +G ++T+ Sbjct: 97 LTTADELLEKALRYKSYWGKNGGITVSGGESLLQIDF-LIEFFRKAKAKGINTCLDTS 153 >gi|262039026|ref|ZP_06012360.1| pyruvate formate-lyase 2-activating enzyme [Leptotrichia goodfellowii F0264] gi|261746936|gb|EEY34441.1| pyruvate formate-lyase 2-activating enzyme [Leptotrichia goodfellowii F0264] Length = 265 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 31/112 (27%) Query: 29 FSGCNLWSGREQDRLSAQCRFCD------------------TDFVGIQGTKGGRYNVDQL 70 F GC L +C++C + G ++++ Sbjct: 28 FKGCPL-----------RCKWCSNPETQKIENEVFYNEKEISPITGEYPKVAKLMTLNEI 76 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG 120 D++ + G L+GGE L+ V+ L + L + A+ET G Sbjct: 77 FDIVMKDEKFYRNSGGGVTLSGGEILVNVEFAIKLFEKLKEEYINTAIETTG 128 >gi|225872692|ref|YP_002754149.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196] gi|225793648|gb|ACO33738.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196] Length = 329 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 10/106 (9%) Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPL 103 A+C CD K G +A LI+E R+ TGGEPLL+ D + Sbjct: 29 ARCISCD---YWKTHWKDGLNTARAIA-LIDEIHDLSIGSLRF---TGGEPLLRKDFFEV 81 Query: 104 IQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 ++ R F +I ++TNG + + + + SP ++ I G +E Sbjct: 82 LERSQARRFKKIVLQTNG-LLLERFHEKVNASPITHINVSIDGMRE 126 >gi|224371980|ref|YP_002606146.1| PflC2 [Desulfobacterium autotrophicum HRM2] gi|223694699|gb|ACN17982.1| PflC2 [Desulfobacterium autotrophicum HRM2] Length = 302 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETN 119 G ++ D L ++I++ + E G +GGEPL+Q L++ + G AV+T+ Sbjct: 105 GRCHSTDSLMEMIKKDRLFYESSGGGVTFSGGEPLVQWRSLDRLLRGCTRLGIHTAVDTS 164 Query: 120 G 120 G Sbjct: 165 G 165 >gi|94266923|ref|ZP_01290577.1| Radical SAM [delta proteobacterium MLMS-1] gi|93452399|gb|EAT03016.1| Radical SAM [delta proteobacterium MLMS-1] Length = 351 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 16/92 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR ++ ++ + ++++ VL+ Sbjct: 16 CNLNC--------VHCR----SSSELEAKGHPDFDFTEAKRILDD---ITSYAQPVVVLS 60 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ DV + ++G + + TNGT+ Sbjct: 61 GGEPLLRDDVFDIAAYGTEKGLRMCLATNGTL 92 >gi|89894967|ref|YP_518454.1| hypothetical protein DSY2221 [Desulfitobacterium hafniense Y51] gi|89334415|dbj|BAE84010.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 332 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 4/75 (5%) Query: 49 FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL 107 +CD + N + L+E+ G + + +GGEPLL+ D+ L+ Sbjct: 14 YCDHCYRDAGCQAEEELNTAEAKTLLEQIAKAG---FKIMIFSGGEPLLRPDIVELVAYA 70 Query: 108 NKRGFEIAVETNGTI 122 G TNGT+ Sbjct: 71 TSLGLRPVFGTNGTL 85 >gi|332158187|ref|YP_004423466.1| pyruvate formate-lyase activating enzyme related protein [Pyrococcus sp. NA2] gi|331033650|gb|AEC51462.1| pyruvate formate-lyase activating enzyme related protein [Pyrococcus sp. NA2] Length = 240 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 18/102 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCNL + A+ C + +V++L + +E + Sbjct: 24 LCGCNLKCPFCHNWKIAERIGC------------FKLDVNELREEVEFASPLIDYFH--- 68 Query: 89 VLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGI 128 +TGGEPL+Q L + + + G +I++ +N TI P I Sbjct: 69 -VTGGEPLVQWRELEVLFELIRETGVKISLNSNLTIVRPLEI 109 >gi|257792110|ref|YP_003182716.1| Radical SAM domain-containing protein [Eggerthella lenta DSM 2243] gi|257476007|gb|ACV56327.1| Radical SAM domain protein [Eggerthella lenta DSM 2243] Length = 435 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 29/85 (34%), Gaps = 16/85 (18%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV-DQLADLIEEQWI 79 G F + CN C FC F Q R V D D ++ Sbjct: 85 GSKTFFLSLA-CN-----------RSCYFC---FNANQADYADRLRVNDAWRDEVDAFAD 129 Query: 80 TGEKEGRYCVLTGGEPLLQVDVPLI 104 E + LTGGEPLL D ++ Sbjct: 130 ACGGEVTHVGLTGGEPLLHADESVM 154 >gi|255316723|ref|ZP_05358306.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium difficile QCD-76w55] Length = 166 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 26/116 (22%) Query: 9 IFLTL-QGEGGHAG-RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66 IF ++ G G R+ VF +GC +C+ C G Y Sbjct: 12 IFESIVDG----TGLRLVVF--LAGC-----------QHRCKGCHNPETW-DINNGIMYT 53 Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV------PLIQALNKRGFEIAV 116 +++ + I +++ + +GG+PLLQ + + + L + F+I + Sbjct: 54 NEEVINFIVDKYKKCNGYYKGITFSGGDPLLQKEELEYIIKDIREKLKEYNFDIWL 109 >gi|167644029|ref|YP_001681692.1| molybdenum cofactor biosynthesis protein A [Caulobacter sp. K31] gi|167346459|gb|ABZ69194.1| molybdenum cofactor biosynthesis protein A [Caulobacter sp. K31] Length = 348 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 56/149 (37%), Gaps = 20/149 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C K ++++L L G ++ R LTGGEPL++ Sbjct: 39 DRCDLRCTYC-MAEHMTFLPKAEVLSLEELDRLASTFVGLGVRKLR---LTGGEPLVRKG 94 Query: 101 V-PLIQAL---NKRGF--EIAVETNGTIEPPQGIDW-------ICVS---PKAGCDLKIK 144 + L++ L G E+ + TNGT D I VS K K+ Sbjct: 95 IMTLVERLSRHLATGALDELTLTTNGTQLAQHASDLARLGVKRINVSLDTLKPDLFRKLT 154 Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSL 173 G +L V ++ + I +L Sbjct: 155 RGGDLSKVLAGIDAALAAGIQVKINAVAL 183 >gi|300789974|ref|YP_003770265.1| Fe-S oxidoreductase [Amycolatopsis mediterranei U32] gi|299799488|gb|ADJ49863.1| predicted Fe-S oxidoreductase [Amycolatopsis mediterranei U32] Length = 373 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 30/106 (28%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN--------VDQLADLIEEQWITGEK 83 CNL C +C ++ + G R D++ I E Sbjct: 23 CNL-----------ACDYC---YLYTKADHGWRLRPRALSPALADRIVGRIAEHVAAHRL 68 Query: 84 EGRYCVLTGGEPLLQVDVPLIQ----ALNKR---GFEIAVETNGTI 122 +L GGEPLL + L++ AL R ++++TNGT+ Sbjct: 69 PSLAVLLHGGEPLL-GGLSLVRQIAGALRDRVPAQVRLSMQTNGTL 113 >gi|158319621|ref|YP_001512128.1| molybdenum cofactor biosynthesis protein A [Alkaliphilus oremlandii OhILAs] gi|167011810|sp|A8MLW5|MOAA_ALKOO RecName: Full=Molybdenum cofactor biosynthesis protein A gi|158139820|gb|ABW18132.1| molybdenum cofactor biosynthesis protein A [Alkaliphilus oremlandii OhILAs] Length = 320 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 6/95 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N D + +C++C + ++++ D+++ G + R +TG Sbjct: 10 NYMRISITDLCNLRCQYCMPAEGICKKDHKEVLTLEEITDIVKAGVGLGIDKVR---ITG 66 Query: 93 GEPLLQVDV-PLIQALNKRG--FEIAVETNGTIEP 124 GEPL++ + IQ ++ +IA+ TNG + P Sbjct: 67 GEPLVRNGIVEFIQMISNIDGIKDIAITTNGILLP 101 >gi|326404219|ref|YP_004284301.1| hypothetical protein ACMV_20720 [Acidiphilium multivorum AIU301] gi|325051081|dbj|BAJ81419.1| hypothetical protein ACMV_20720 [Acidiphilium multivorum AIU301] Length = 383 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 8/87 (9%) Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 R +V + ++E + GGEPLL ++P +++ + R I + TN + Sbjct: 58 RLSVADALEAVDECG------APVVAIAGGEPLLHREMPEIVEKILARDKFIYLCTN-AL 110 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQEL 149 + ID P D+ + G +E+ Sbjct: 111 LLEKKIDQYKPHPNFCWDIHLDGDREM 137 >gi|126460244|ref|YP_001056522.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|126249965|gb|ABO09056.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548] Length = 579 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 8/91 (8%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 L +R + C C F ++Q+ ++ ++G Sbjct: 149 LAIIDVTNRCNMACPVC---FANAGAAGYVYEPTLEQIEYMLRTLRAQKPWPPNAIQISG 205 Query: 93 GEPLLQVDVPLI-QALNKRGFEIAVE--TNG 120 GEP L+ D+P+I K GF +E TNG Sbjct: 206 GEPTLRDDLPIIVSMAKKLGFT-HIEVNTNG 235 >gi|77165222|ref|YP_343747.1| oxidoreductase [Nitrosococcus oceani ATCC 19707] gi|254434696|ref|ZP_05048204.1| radical SAM domain protein [Nitrosococcus oceani AFC27] gi|76883536|gb|ABA58217.1| Radical SAM domain Fe-S oxidoreductase [Nitrosococcus oceani ATCC 19707] gi|207091029|gb|EDZ68300.1| radical SAM domain protein [Nitrosococcus oceani AFC27] Length = 372 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 22/119 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ + R + + D ++E + Sbjct: 38 CNL-----------ACAGCGKIDYS--EEILDRRLSPQECFDAVDECG------APIVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ ++P ++ + KR + + TN + + + SP + + G +E Sbjct: 79 PGGEPLIHKEMPQIVAGIVKRKKFVYLCTN-ALLLSKRLKDYTPSPYLTFSVHLDGNRE 136 >gi|20089980|ref|NP_616055.1| moaA/nifB/pqqE family protein [Methanosarcina acetivorans C2A] gi|19914943|gb|AAM04535.1| moaA/nifB/pqqE family protein [Methanosarcina acetivorans C2A] Length = 509 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120 +++ +IE TGGEP ++ D+P LI+ + GF +I + +NG Sbjct: 140 EEIRKMIELLRKEKPAPCSAIQFTGGEPTVRDDLPELIELAEELGFAQIQIASNG 194 >gi|188025792|ref|ZP_02959835.2| hypothetical protein PROSTU_01734 [Providencia stuartii ATCC 25827] gi|188020518|gb|EDU58558.1| hypothetical protein PROSTU_01734 [Providencia stuartii ATCC 25827] Length = 273 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 56/180 (31%), Gaps = 36/180 (20%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G V++L Sbjct: 52 VF--FQGC-----------LMRCLYCHNRDT----WDTHTGKMVTVEELMKEAVTYRHFM 94 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGIDWICVSPKAG 138 G +GGE +LQ + +A + ++TNG ID + Sbjct: 95 NATGGGVTASGGEAILQAEFVRDWFRACKAQNIHTCLDTNGFVRRYDPVIDEL----MEV 150 Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198 DL + ++L Q V N+ +F R+ + N + Y P W Sbjct: 151 TDLVMLDLKQLNDDIHQTLVGVSNHRTLEFARY--------LAKRNQKTWVRYVVV-PGW 201 >gi|225155513|ref|ZP_03724004.1| (Formate-C-acetyltransferase)-activating enzyme [Opitutaceae bacterium TAV2] gi|224803814|gb|EEG22046.1| (Formate-C-acetyltransferase)-activating enzyme [Opitutaceae bacterium TAV2] Length = 305 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 41/142 (28%), Gaps = 48/142 (33%) Query: 24 AVFCRFSGCNLWSGREQDRLS-----------AQCRFC-------DTD---------FVG 56 VFC GCN+ + + ++C C DT Sbjct: 28 TVFC--KGCNMRCAWCHNPETINPRPELQFFRSRCIGCGHCLAAPDTSGAGASADAALCF 85 Query: 57 IQGTKGGRY-----NVDQLA---------DLIEEQWITGEKEGRY---CVLTGGEPLLQV 99 T R+ + + L D++ E L+GGE +Q Sbjct: 86 TDDTGVARHYRGDCHAEALVKVGREVAPQDVLAEALQDKNFYANSGGGVTLSGGEVTVQT 145 Query: 100 DVPL--IQALNKRGFEIAVETN 119 L + L G A+ETN Sbjct: 146 HFALETLALLKASGIHTAIETN 167 >gi|91200261|emb|CAJ73306.1| similar to moaA/nifB/ppqE/nirJ protein family for cofactor bionsynthesis [Candidatus Kuenenia stuttgartiensis] Length = 333 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 11/100 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCVLTG- 92 DR + C++C R +VDQ +++ L G Sbjct: 32 CLYVTDRCTLSCKWC-LRQSTQDKFSNKRHDMSVDQARKILQ-----HFPNAARLSLAGF 85 Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GEPL+ D+ + KR +++ TNGT+ + ID I Sbjct: 86 GEPLMVDDLFKITAEFKKRPMRVSIITNGTL-LLERIDDI 124 >gi|29375960|ref|NP_815114.1| molybdopterin cofactor biosynthesis protein A, putative [Enterococcus faecalis V583] gi|256965220|ref|ZP_05569391.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis HIP11704] gi|257419205|ref|ZP_05596199.1| predicted protein [Enterococcus faecalis T11] gi|29343422|gb|AAO81184.1| molybdopterin cofactor biosynthesis protein A, putative [Enterococcus faecalis V583] gi|256955716|gb|EEU72348.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis HIP11704] gi|257161033|gb|EEU90993.1| predicted protein [Enterococcus faecalis T11] Length = 324 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 14/97 (14%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R S DR +C +C G+ K + D ++I I +++ + Sbjct: 15 VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEDIK 63 Query: 87 YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 LTGGEPL++ + + LI+ + + G E + + TNG Sbjct: 64 KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100 >gi|296133638|ref|YP_003640885.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermincola sp. JR] gi|296032216|gb|ADG82984.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermincola potens JR] Length = 170 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 25/90 (27%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 GC +C C D + G ++D++ I + + Sbjct: 28 QGCP-----------RRCPGCHNPD----ALDPDGGQEVDIDEIVSTIVKNPLVKG---- 68 Query: 87 YCVLTGGEPLLQVD--VPLIQALNKRGFEI 114 +GG+P LQ L L RG I Sbjct: 69 -VTFSGGDPFLQAAGFAALAGKLKDRGLNI 97 >gi|126653928|ref|ZP_01725772.1| hypothetical protein BB14905_00445 [Bacillus sp. B14905] gi|126589588|gb|EAZ83728.1| hypothetical protein BB14905_00445 [Bacillus sp. B14905] Length = 370 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D + ++E + +TGGEP++ Sbjct: 42 RCAHCAVGYT-LQNKDPEALPIDLILRRLDEI-----PHLKTLSITGGEPMMSKKSVQNY 95 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 +PL++ ++RG + +N T+EP Sbjct: 96 VLPLLKYAHERGVRTQINSNLTLEP 120 >gi|45358134|ref|NP_987691.1| molybdenum cofactor biosynthesis protein A [Methanococcus maripaludis S2] gi|74555264|sp|Q6LZQ3|MOAA_METMP RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|44920891|emb|CAF30127.1| MoaA/nifB/pqqE family [Methanococcus maripaludis S2] Length = 297 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 28/119 (23%) Query: 28 RFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 R S CNL +C +C G G + D++ ++ E Sbjct: 13 RLSITPKCNL-----------KCFYC--HKEGRNEEHGKLMSADEIGKIVNSSL---EFG 56 Query: 85 GRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNGTI-------EPPQGIDWICVS 134 R ++GGEPLL+ D+P +I + + I++ TNG + G+D + VS Sbjct: 57 VRKIKISGGEPLLRTDLPEIISYIKNEQIKDISLTTNGILLEKYAQKLKDAGLDRVNVS 115 >gi|24212660|sp|O57854|MOAA_PYRHO RecName: Full=Probable molybdenum cofactor biosynthesis protein A Length = 310 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCV 89 CNL C +C +G G +++ ++ + + Sbjct: 21 CNL-----------SCFYC-----HREGQLDGERFMTPEEIERIV---RVASRLGIKKVK 61 Query: 90 LTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 LTGGEP ++ D + +I+ L ++++ TNGT Sbjct: 62 LTGGEPTIRKDILEIIRRLKPYVVDLSLTTNGT 94 >gi|148260825|ref|YP_001234952.1| radical SAM domain-containing protein [Acidiphilium cryptum JF-5] gi|146402506|gb|ABQ31033.1| Radical SAM domain protein [Acidiphilium cryptum JF-5] Length = 383 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 8/87 (9%) Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 R +V + ++E + GGEPLL ++P +++ + R I + TN + Sbjct: 58 RLSVADALEAVDECG------APVVAIAGGEPLLHREMPEIVEKILARDKFIYLCTN-AL 110 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQEL 149 + ID P D+ + G +E+ Sbjct: 111 LLEKKIDQYKPHPNFCWDIHLDGDREM 137 >gi|307635039|gb|ADI85246.2| magnesium-dependent deoxyribonuclease, TatD family, and radical SAM domain iron-sulfur oxidoreductase [Geobacter sulfurreducens KN400] Length = 462 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 14/112 (12%) Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLA 71 GE A R+A R N +R S +C FC D D+ + D A Sbjct: 261 GESDQAARIAYRIR----NSLYLNITNRCSNRCSFCAKFD-DYTVKGHHLRLDHEPDS-A 314 Query: 72 DLIEEQWITGEKEGRYCVLTG-GEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +++ G + V G GEP+L++D+ + + L KRGF I + T+G Sbjct: 315 EVLAAVGEPGPVDE--IVFCGFGEPMLRLDLIVEVARELKKRGFRIRINTDG 364 >gi|39997584|ref|NP_953535.1| TatD family deoxyribonuclease [Geobacter sulfurreducens PCA] gi|39984476|gb|AAR35862.1| deoxyribonuclease, TatD family [Geobacter sulfurreducens PCA] Length = 462 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 14/112 (12%) Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLA 71 GE A R+A R N +R S +C FC D D+ + D A Sbjct: 261 GESDQAARIAYRIR----NSLYLNITNRCSNRCSFCAKFD-DYTVKGHHLRLDHEPDS-A 314 Query: 72 DLIEEQWITGEKEGRYCVLTG-GEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +++ G + V G GEP+L++D+ + + L KRGF I + T+G Sbjct: 315 EVLAAVGEPGPVDE--IVFCGFGEPMLRLDLIVEVARELKKRGFRIRINTDG 364 >gi|295107810|emb|CBL21763.1| GTP cyclohydrolase subunit MoaA [Ruminococcus obeum A2-162] Length = 316 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C GI+ T GR N+ Q ++I + E + +TGGEPL++ Sbjct: 18 DRCNLRCIYC-MPEEGIRLT--GRENILQEPEIIRVCQVMAELGIKKIKITGGEPLVRPR 74 Query: 101 VP-LIQALNK-RGFE-IAVETNG 120 +P LI + G E + + TNG Sbjct: 75 IPGLIHQIKAIPGIEKVTLTTNG 97 >gi|159033044|gb|ABW87805.1| SpeY [Streptomyces spectabilis] Length = 302 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF--EIAVETN 119 + ++ D + + Y + GGEPLL DV LI+A+ G + V TN Sbjct: 41 ENADPAEIHDTLS--VLARSYHASYAKIMGGEPLLHPDVVGLIEAVRATGISDTVLVATN 98 Query: 120 GTI 122 GT+ Sbjct: 99 GTL 101 >gi|194336426|ref|YP_002018220.1| molybdenum cofactor biosynthesis protein A [Pelodictyon phaeoclathratiforme BU-1] gi|194308903|gb|ACF43603.1| molybdenum cofactor biosynthesis protein A [Pelodictyon phaeoclathratiforme BU-1] Length = 326 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 29/115 (25%) Query: 27 CR---FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD---LIEEQWIT 80 R S CNL +C +C ++ GR + L D + + Sbjct: 15 VRIAVTSRCNL-----------RCSYC------MREEHEGRADTVSLLDKNEINTIIAVL 57 Query: 81 GEKEGRYCVLTGGEPLLQVDVP-LIQALNKRG--FEIAVETNGTI---EPPQGID 129 E TGGEPLL+ + L++ + + + TNG + P ID Sbjct: 58 AELGFSKVRFTGGEPLLREGIAGLVREAKQHPSIKTVGLTTNGVLLDRFLPSLID 112 >gi|322834860|ref|YP_004214887.1| glycyl-radical enzyme activating protein family [Rahnella sp. Y9602] gi|321170061|gb|ADW75760.1| glycyl-radical enzyme activating protein family [Rahnella sp. Y9602] Length = 295 Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 38/116 (32%), Gaps = 22/116 (18%) Query: 25 VFCRFSGCNLWSGREQDRLS-----------AQCRFCDTDF-------VGIQGTKGGRYN 66 VF F GC + S A+C C T G G Sbjct: 45 VF--FKGCPHRCPWCANPESMSPRIQVIKRQAKCLNCRTCLQDPNECPSGAMEYVGEDIT 102 Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 + L + + I G L+GGE L+Q L++ L G A+ET G Sbjct: 103 LPDLMTRLLKDEIFFRSSGGGVTLSGGEVLMQYTFAGELLRELQALGIPTAIETAG 158 >gi|256830158|ref|YP_003158886.1| Radical SAM domain protein [Desulfomicrobium baculatum DSM 4028] gi|256579334|gb|ACU90470.1| Radical SAM domain protein [Desulfomicrobium baculatum DSM 4028] Length = 397 Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 16/95 (16%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL C + DQ +I++ + Sbjct: 47 TQRCNLKC--------VHCY----AHAVEPSNHKDPISTDQAKAMIDDL---AKFGAPVI 91 Query: 89 VLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122 + +GGEPL+ + V L + G + TNGT+ Sbjct: 92 LFSGGEPLVREDLVDLAKYATSTGMRAVISTNGTL 126 >gi|154492926|ref|ZP_02032552.1| hypothetical protein PARMER_02568 [Parabacteroides merdae ATCC 43184] gi|154087231|gb|EDN86276.1| hypothetical protein PARMER_02568 [Parabacteroides merdae ATCC 43184] Length = 301 Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111 G Y+ + L IE++ + ++ GGEPLL PL+ L + G Sbjct: 100 GTEYSAEALMKEIEKEIVFMDRSEGGVTFCGGEPLLHPG-PLLDLLRRCG 148 >gi|15803040|ref|NP_289070.1| hypothetical protein Z3780 [Escherichia coli O157:H7 EDL933] gi|12516911|gb|AAG57627.1|AE005481_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] Length = 384 Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL ++ VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N R L+ + I Y Sbjct: 236 APN-DEIRDEIVPINKXXNXETFLAAVRRYLE----KSNANQGRVTIEYVM 281 >gi|297200519|ref|ZP_06917916.1| radical SAM domain-containing protein [Streptomyces sviceus ATCC 29083] gi|297147672|gb|EFH28704.1| radical SAM domain-containing protein [Streptomyces sviceus ATCC 29083] Length = 401 Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 32/97 (32%), Gaps = 14/97 (14%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL S + D G V + A LI E VL Sbjct: 15 CNLACDYCYVYESVDQSWRDRPRTMAPGV------VRRAAALIAEHAREHALSEVQVVLH 68 Query: 92 GGEPLL-------QVDVPLIQALNK-RGFEIAVETNG 120 GGEPLL V L AL+ + ++TNG Sbjct: 69 GGEPLLVGAERLDAVLRELAGALDGVAELRLNLQTNG 105 >gi|241765406|ref|ZP_04763377.1| Radical SAM domain protein [Acidovorax delafieldii 2AN] gi|241364850|gb|EER59814.1| Radical SAM domain protein [Acidovorax delafieldii 2AN] Length = 419 Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 16/112 (14%) Query: 33 NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 + R + C+ C + G + ++ ++++ +L+ Sbjct: 36 PVVIWNLIRRCNLTCKHC---YALSADHDYEGELSTQEVFGVMDDLKA---YRVPVLILS 89 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI--------EPPQGIDWICVS 134 GGEPL++ D+ + F + TNGT+ G D++ +S Sbjct: 90 GGEPLMRPDLFDIAARAKDMRFYTGLSTNGTLIDEPMADRVAAAGFDYVGIS 141 >gi|218261737|ref|ZP_03476472.1| hypothetical protein PRABACTJOHN_02143 [Parabacteroides johnsonii DSM 18315] gi|218223813|gb|EEC96463.1| hypothetical protein PRABACTJOHN_02143 [Parabacteroides johnsonii DSM 18315] Length = 301 Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111 G Y+ + L IE++ + ++ GGEPLL + PL+ L + G Sbjct: 100 GTEYSAEALMKEIEKETVFMDRSEGGVTFCGGEPLLHPE-PLLDLLRRCG 148 >gi|146282425|ref|YP_001172578.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas stutzeri A1501] gi|145570630|gb|ABP79736.1| coenzyme PQQ synthesis protein E [Pseudomonas stutzeri A1501] Length = 381 Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 8/98 (8%) Query: 27 CRF--SGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 R SG +W E + QC FC ++ + + + D++ + G Sbjct: 8 LRLDGSGNPVWLLLELTYQCPLQCVFC-SNPRNFADYRPDELSTAEWIDVMAQARAMGAV 66 Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 + +GGEP L+ D+ L+ ++ G+ + T+G Sbjct: 67 Q---IGFSGGEPTLRKDLETLVAEADRMGYYTNLITSG 101 >gi|148554439|ref|YP_001262021.1| GTP cyclohydrolase subunit MoaA [Sphingomonas wittichii RW1] gi|148499629|gb|ABQ67883.1| GTP cyclohydrolase subunit MoaA [Sphingomonas wittichii RW1] Length = 346 Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 11/93 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +CR+C K +++LA L + G ++ R LTGGEPL++ Sbjct: 32 DRCDFRCRYC-MAEKMQFLPKREILTIEELAALADAFIARGIRKIR---LTGGEPLVRRG 87 Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGIDWICV 133 + + L G I G + G+D + + Sbjct: 88 IDELVRLI--GRRI-----GAKDDGGGLDELTL 113 >gi|73538724|ref|YP_299091.1| radical SAM family protein [Ralstonia eutropha JMP134] gi|72122061|gb|AAZ64247.1| Radical SAM [Ralstonia eutropha JMP134] Length = 386 Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 22/120 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R +V++ ++E + Sbjct: 38 CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLGAVDECG------APVVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEPLL D+P +++ + R + + TN + + +D SP + + G +E+ Sbjct: 79 AGGEPLLHKDMPEIVRGIIARRKFVYLCTN-ALLMEKKLDQYEPSPYFVWSVHLDGDREM 137 >gi|52787593|ref|YP_093422.1| molybdenum cofactor biosynthesis protein A [Bacillus licheniformis ATCC 14580] gi|163119684|ref|YP_080993.2| molybdenum cofactor biosynthesis protein A [Bacillus licheniformis ATCC 14580] gi|319648075|ref|ZP_08002292.1| molybdenum cofactor biosynthesis protein A [Bacillus sp. BT1B_CT2] gi|81608871|sp|Q65DY5|MOAA_BACLD RecName: Full=Molybdenum cofactor biosynthesis protein A gi|52350095|gb|AAU42729.1| MoaA [Bacillus licheniformis ATCC 14580] gi|145903194|gb|AAU25355.2| MoaA [Bacillus licheniformis ATCC 14580] gi|317389710|gb|EFV70520.1| molybdenum cofactor biosynthesis protein A [Bacillus sp. BT1B_CT2] Length = 341 Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 24/112 (21%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D F+ KG + ++L L + + LTG Sbjct: 25 DRCNLRCTYCMPAEIFGQDYPFL----PKGELLSFEELERLAK--LFVHQFGVEKIRLTG 78 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEP-------PQGIDWICVS 134 GEPL++ D+P L+ L +G IA+ TNG + P G+ + VS Sbjct: 79 GEPLMRKDMPELVGKLAGIKGIRDIAMTTNGVLLPVYADKLKKAGLKRVTVS 130 >gi|212712166|ref|ZP_03320294.1| hypothetical protein PROVALCAL_03248 [Providencia alcalifaciens DSM 30120] gi|212685213|gb|EEB44741.1| hypothetical protein PROVALCAL_03248 [Providencia alcalifaciens DSM 30120] Length = 326 Score = 39.2 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 7/83 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D + +C +C + GR+ L ++ E +TGGEP ++ D Sbjct: 21 DVCNFRCTYC----LPDGYKPSGRHEFLTLDEIRRVSRAFAELGTEKVRITGGEPTMRKD 76 Query: 101 -VPLIQALNKRG--FEIAVETNG 120 +I A+ + +IAV TNG Sbjct: 77 FTDIIAAIKENDSIKKIAVTTNG 99 >gi|260885334|ref|ZP_05734801.2| pyruvate formate-lyase 1-activating enzyme [Prevotella tannerae ATCC 51259] gi|260852856|gb|EEX72725.1| pyruvate formate-lyase 1-activating enzyme [Prevotella tannerae ATCC 51259] Length = 260 Score = 39.2 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 30/126 (23%) Query: 2 KLYSIK--EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFV 55 + + E F ++ G G +F GC + +C++C DT Sbjct: 21 SMLQVHSIESFGSVDGPGIRFV----IF--LKGC-----------AMRCQYCHNPDT--- 60 Query: 56 GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFE 113 G +VD++ + ++G ++GGE LLQ L + G Sbjct: 61 -WSRAGGQLRSVDEVLAQAQRFQSYWGEQGG-ITVSGGEALLQMPALTELFRKAKDLGIN 118 Query: 114 IAVETN 119 ++T+ Sbjct: 119 TCLDTS 124 >gi|288930733|ref|YP_003434793.1| radical SAM protein [Ferroglobus placidus DSM 10642] gi|288892981|gb|ADC64518.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642] Length = 335 Score = 39.2 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 12/97 (12%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R + +C +C + + ++ +IE + TGGEPLL+ DV Sbjct: 33 RCNMRCHYC-----AYWMWRCDEMSTVEVKRMIE---GAADVGMAVYTATGGEPLLRRDV 84 Query: 102 -PLIQALNKRGFEIAVETNGTIEPP---QGIDWICVS 134 +++ G + TNG + +D + VS Sbjct: 85 NEILRKAKDCGLYTMLVTNGLLLEKFSNLNVDLLVVS 121 >gi|226941178|ref|YP_002796252.1| NrdG [Laribacter hongkongensis HLHK9] gi|226716105|gb|ACO75243.1| NrdG [Laribacter hongkongensis HLHK9] Length = 159 Score = 39.2 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 15/89 (16%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 R +F SGC +C C + GR D+LAD I Sbjct: 18 RATLFV--SGC-----------EHRCPGC--YNASTWPVESGRPFDDELADRIIADLNDT 62 Query: 82 EKEGRYCVLTGGEPLLQVDVPLIQALNKR 110 R L+GG+PL ++ ++ L +R Sbjct: 63 RIRRRGLSLSGGDPLHPANLATVRKLLER 91 >gi|254173371|ref|ZP_04880044.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermococcus sp. AM4] gi|214032780|gb|EEB73609.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermococcus sp. AM4] Length = 246 Score = 39.2 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 22/101 (21%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD--QLADLIEEQWITGEKEGR 86 GCNL +C FC ++++ L D +E + Sbjct: 24 LCGCNL-----------RCPFC---HNWRIAEGLDCFSLNRKALLDELEASAFLIDYFH- 68 Query: 87 YCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPP 125 +TGGEPL+Q L + +++ TN T+ P Sbjct: 69 ---VTGGEPLMQWRELSSLFAEVKLLDVPVSLNTNLTLVRP 106 >gi|86604900|ref|YP_473663.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp. JA-3-3Ab] gi|86553442|gb|ABC98400.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp. JA-3-3Ab] Length = 312 Score = 39.2 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 17/91 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR+C K Q ++I E G +E R +T Sbjct: 22 CNL-----------RCRYC-MPLHPEFLDKSSYLTPQQYKEIIGELLDYGIEEVR---IT 66 Query: 92 GGEPLL-QVDVPLIQALNKRGFE-IAVETNG 120 GGEPL+ Q +IQ L K +++ TNG Sbjct: 67 GGEPLVRQDFDEVIQELAKLKIPSLSLTTNG 97 >gi|18313168|ref|NP_559835.1| pyruvate formate-lyase activating enzyme-like protein [Pyrobaculum aerophilum str. IM2] gi|18160681|gb|AAL64017.1| pyruvate formate-lyase activating enzyme homolog [Pyrobaculum aerophilum str. IM2] Length = 373 Score = 39.2 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 18/93 (19%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 VF FSGCN +C +C + G + LA + + G + Sbjct: 153 TVF--FSGCNF-----------RCVYCQNWDISQFSESGIEVTAEALAAIQAKLREEGAR 199 Query: 84 EGRYCVLTGGEPL--LQVDVPLIQALNKRGFEI 114 + GGEP + + ++ L +RG + Sbjct: 200 NINWV---GGEPTPNIPYILESLRILARRGVNV 229 >gi|107027643|ref|YP_625154.1| radical SAM family protein [Burkholderia cenocepacia AU 1054] gi|116693646|ref|YP_839179.1| radical SAM domain-containing protein [Burkholderia cenocepacia HI2424] gi|105897017|gb|ABF80181.1| Radical SAM [Burkholderia cenocepacia AU 1054] gi|116651646|gb|ABK12286.1| Radical SAM domain protein [Burkholderia cenocepacia HI2424] Length = 386 Score = 39.2 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 22/119 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R +V++ ++E + Sbjct: 38 CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPLL D+P +++ + KR + + TN + + +D SP + + G +E Sbjct: 79 AGGEPLLHKDMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYQPSPYFVWSVHLDGDKE 136 >gi|299537543|ref|ZP_07050837.1| hypothetical protein BFZC1_16040 [Lysinibacillus fusiformis ZC1] gi|298727104|gb|EFI67685.1| hypothetical protein BFZC1_16040 [Lysinibacillus fusiformis ZC1] Length = 370 Score = 39.2 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q ++ + ++E + +TGGEP++ Sbjct: 42 RCAHCAVGYT-LQNKDPEALPIELILKRLDEI-----PHLKTLSITGGEPMMSKKSVQNY 95 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 +PL++ ++RG + +N T+EP Sbjct: 96 VLPLLKYAHERGVRTQINSNLTLEP 120 >gi|257455930|ref|ZP_05621147.1| molybdenum cofactor biosynthesis protein A [Enhydrobacter aerosaccus SK60] gi|257446676|gb|EEV21702.1| molybdenum cofactor biosynthesis protein A [Enhydrobacter aerosaccus SK60] Length = 334 Score = 39.2 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 8/85 (9%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D +V ++ LI+ G + R LTGGEP ++ Sbjct: 27 DFCNFRCHYCLPDGYTANAGKRPDNELSVSEIDVLIQAFAKLGTTKVR---LTGGEPSIR 83 Query: 99 VDVPLIQALNK--RGFE-IAVETNG 120 D+P I L K +G + +AV +NG Sbjct: 84 QDLPRIIELAKQTQGIQTVAVSSNG 108 >gi|225572319|ref|ZP_03781183.1| hypothetical protein RUMHYD_00613 [Blautia hydrogenotrophica DSM 10507] gi|225040201|gb|EEG50447.1| hypothetical protein RUMHYD_00613 [Blautia hydrogenotrophica DSM 10507] Length = 297 Score = 39.2 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 18/81 (22%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNK-RGFE-IAVETNG 120 + +++LA++ I R LTGGEPL LQ++ L++ L K G E + + TNG Sbjct: 18 HEIERLAEIFVSVGI------RKIKLTGGEPLVRLQIE-ELVKDLKKIEGIEQVTLTTNG 70 Query: 121 T-------IEPPQGIDWICVS 134 T + GID + +S Sbjct: 71 TLLKEKAALLAEAGIDGVNLS 91 >gi|220912213|ref|YP_002487522.1| molybdenum cofactor biosynthesis protein A [Arthrobacter chlorophenolicus A6] gi|219859091|gb|ACL39433.1| molybdenum cofactor biosynthesis protein A [Arthrobacter chlorophenolicus A6] Length = 380 Score = 39.2 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 21/106 (19%) Query: 21 GRVAVFCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEE 76 GR A R S CNL +C +C G++ K +++ ++ Sbjct: 38 GRRATDMRLSLTDKCNL-----------RCTYC-MPAEGLEWLAKQAVMTAEEIVRIVR- 84 Query: 77 QWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKR--GFEIAVETN 119 + R LTGGEPL+ V +I AL I++ TN Sbjct: 85 -IGVEQLGVRELRLTGGEPLVRHDLVDIISALRSNHPDLPISMTTN 129 >gi|171185898|ref|YP_001794817.1| radical SAM domain-containing protein [Thermoproteus neutrophilus V24Sta] gi|170935110|gb|ACB40371.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta] Length = 573 Score = 39.2 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 8/91 (8%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 L +R + C C F ++Q+ ++ L+G Sbjct: 147 LAIVDVTNRCNMACPVC---FANAGAAGYVYEPTIEQIEYMLRTLRAQKPWAPNAVQLSG 203 Query: 93 GEPLLQVDVP-LIQALNKRGFEIAVE--TNG 120 GEP L+ D+P +I+ K GF +E TNG Sbjct: 204 GEPTLRDDLPEIIRMAKKLGFT-HIEVNTNG 233 >gi|160879194|ref|YP_001558162.1| radical SAM domain-containing protein [Clostridium phytofermentans ISDg] gi|160427860|gb|ABX41423.1| Radical SAM domain protein [Clostridium phytofermentans ISDg] Length = 297 Score = 39.2 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 22/105 (20%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL QC FC T V + +IEE + + Sbjct: 23 CNL-----------QCDFCPKTKRA------PKFLTVPEFEHVIEEVSPYTNYIYLHIM- 64 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134 GEPLL ++ I+ K+ ++ + TNGT+ P+ + +S Sbjct: 65 --GEPLLHENLKDFIEIAGKKNIKVNLTTNGTLLSPEKEYLLNLS 107 >gi|257085347|ref|ZP_05579708.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis Fly1] gi|256993377|gb|EEU80679.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis Fly1] Length = 324 Score = 38.9 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R S DR +C +C G+ K + D ++I I ++ + Sbjct: 15 VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 63 Query: 87 YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 LTGGEPL++ + + LI+ + + G E + + TNG Sbjct: 64 KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100 >gi|268317762|ref|YP_003291481.1| molybdenum cofactor biosynthesis protein A [Rhodothermus marinus DSM 4252] gi|262335296|gb|ACY49093.1| molybdenum cofactor biosynthesis protein A [Rhodothermus marinus DSM 4252] Length = 363 Score = 38.9 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 18/101 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR+C G+ T D+ ++I + + LT Sbjct: 59 CNL-----------RCRYC-MPEEGLDWTPPEHLLTDE--EIIRLARLFVSQGVTKIRLT 104 Query: 92 GGEPLLQVDVPLIQALNKR--GFE-IAVETNGTIEPPQGID 129 GGEPLL+ + I A R G +A+ TNG + P+ +D Sbjct: 105 GGEPLLRKGIERIVAELARLPGLRALAMTTNG-LLLPKKLD 144 >gi|126700902|ref|YP_001089799.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium difficile 630] gi|255102450|ref|ZP_05331427.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium difficile QCD-63q42] gi|255308355|ref|ZP_05352526.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium difficile ATCC 43255] gi|115252339|emb|CAJ70180.1| Pyruvate formate-lyase (activating enzyme) [Clostridium difficile] Length = 302 Score = 38.9 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 11/100 (11%) Query: 32 CN----LWSGREQDRLSAQCRFCDT--DFVGIQGTK--GGRYNVDQLADLIEEQWITGEK 83 C + +C FC+T D+ + G Y+V L IE+ I E+ Sbjct: 64 CPHKAIYKGETKICLDQDKCEFCETCLDYCVNNAREIVGQEYSVRDLVKEIEKDRIFYEE 123 Query: 84 EGRYCVLTGGEPLLQVDV---PLIQALNKRGFEIAVETNG 120 G L+GGE + Q +I +G +A++T G Sbjct: 124 SGGGVTLSGGEVMAQDMDFICGVINMCKSKGIHVAIDTCG 163 >gi|323135945|ref|ZP_08071028.1| molybdenum cofactor biosynthesis protein A [Methylocystis sp. ATCC 49242] gi|322399036|gb|EFY01555.1| molybdenum cofactor biosynthesis protein A [Methylocystis sp. ATCC 49242] Length = 346 Score = 38.9 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 10/87 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QV 99 DR +C +C ++ + + +++L L G K R +TGGEPL+ Sbjct: 34 DRCDFRCVYCMSEHMTFL-PRRDLLTLEELDRLCSAFVARGTKRLR---ITGGEPLVRHD 89 Query: 100 DVPLIQALNKRGFEIAVE-----TNGT 121 + L +AL++ A+E TNG+ Sbjct: 90 VMTLFRALSRHLASGALEELTLTTNGS 116 >gi|300860220|ref|ZP_07106307.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis TUSoD Ef11] gi|295112913|emb|CBL31550.1| molybdenum cofactor biosynthesis protein A, bacterial [Enterococcus sp. 7L76] gi|300849259|gb|EFK77009.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis TUSoD Ef11] Length = 321 Score = 38.9 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 14/97 (14%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R S DR +C +C G+ K + D ++I I +++ + Sbjct: 12 VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEDIK 60 Query: 87 YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 LTGGEPL++ + + LI+ + + G E + + TNG Sbjct: 61 KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 97 >gi|167464385|ref|ZP_02329474.1| hypothetical protein Plarl_17836 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 374 Score = 38.9 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 23/99 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN+ C DT + ++G ++ +D + ++E + +T Sbjct: 44 CNMRC--------EHCAVGDT----LTASEGSKFPLDLIFKRLDEV-----EHLETISIT 86 Query: 92 GGEPLLQVD------VPLIQALNKRGFEIAVETNGTIEP 124 GGEP + +PL++ +RG + +N T++ Sbjct: 87 GGEPTFHLKTVKDIIIPLLKYAKERGVRSQLNSNLTLDL 125 >gi|118442945|ref|YP_877161.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium novyi NT] gi|118133401|gb|ABK60445.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium novyi NT] Length = 164 Score = 38.9 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 20/95 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 R A+F SGCN Q++ + G V+ + + I+ Sbjct: 20 RSALF--LSGCNHNCDECQNKEMQNANY------------GDDIEVEDILNRIKSNMPL- 64 Query: 82 EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114 + +GGEP Q L L + +I Sbjct: 65 ---IKGVTFSGGEPFEQCRELTVLANKLKEENLDI 96 >gi|157363749|ref|YP_001470516.1| molybdenum cofactor biosynthesis protein A [Thermotoga lettingae TMO] gi|157314353|gb|ABV33452.1| molybdenum cofactor biosynthesis protein A [Thermotoga lettingae TMO] Length = 309 Score = 38.9 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 7/82 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + + ++ D++ + + + G K R +TGGEPLL+ D Sbjct: 18 DRCNHRCFYCTCNNLFLKEEN--LMTYDEVNLISQFFYELGIKCIR---ITGGEPLLRND 72 Query: 101 VP-LIQALNKRGFEIAVETNGT 121 V +++AL+ R F +++ TNG+ Sbjct: 73 VVRIVKALSSR-FTVSMTTNGS 93 >gi|73661954|ref|YP_300735.1| molybdenum cofactor biosynthesis protein A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|82592974|sp|Q49ZI6|MOAA_STAS1 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|72494469|dbj|BAE17790.1| molybdenum cofactor biosynthesis protein A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 340 Score = 38.9 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D DFV + K D++ + + G K+ R +TGG Sbjct: 22 DRCNFRCDYCMPKEIFGD-DFVFL--PKDELLTFDEMVRIAQVYTQLGVKKIR---ITGG 75 Query: 94 EPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 EPLL+ D+ LI LN+ G E I + TNG Sbjct: 76 EPLLRRDLDKLIYQLNQLEGVEDIGLTTNG 105 >gi|329731179|gb|EGG67549.1| molybdenum cofactor biosynthesis protein A [Staphylococcus epidermidis VCU144] gi|329735413|gb|EGG71704.1| molybdenum cofactor biosynthesis protein A [Staphylococcus epidermidis VCU028] Length = 340 Score = 38.9 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 24/94 (25%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D D+ + K ++L + + G K+ R +TGG Sbjct: 22 DRCNFRCDYCMPKEIFGD-DYTFL--PKNELLTFEELTRISKIYAQLGVKKIR---ITGG 75 Query: 94 EPLLQVD-------VPLIQALNKRGFEIAVETNG 120 EPLL+ + + LI + G TNG Sbjct: 76 EPLLRRNLYKLVEQLNLIDGIEDIGLT----TNG 105 >gi|330809991|ref|YP_004354453.1| putative radical-activating enzyme [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378099|gb|AEA69449.1| putative radical-activating enzyme [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 228 Score = 38.9 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 11/110 (10%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L + +CR+C + I + ++ ++ + + V +GG Sbjct: 19 LACVLFCQGCAWRCRYCHNPQL-IPPRGSEEVDWCRVLAFLQRRQDLLDA----VVFSGG 73 Query: 94 EPLLQV-DVPLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKA 137 EP LQ P ++ + + GF I + + G DW+ KA Sbjct: 74 EPTLQDGLAPAMEQVRQMGFRIGLHSAGIKPAAFAKVVGLADWVGFDVKA 123 >gi|27468759|ref|NP_765396.1| molybdenum cofactor biosynthesis protein A [Staphylococcus epidermidis ATCC 12228] gi|57867756|ref|YP_189412.1| molybdenum cofactor biosynthesis protein A [Staphylococcus epidermidis RP62A] gi|251812031|ref|ZP_04826504.1| molybdenum (Mo2+) cofactor biosynthesis protein A [Staphylococcus epidermidis BCM-HMP0060] gi|282875324|ref|ZP_06284197.1| molybdenum cofactor biosynthesis protein A [Staphylococcus epidermidis SK135] gi|293368414|ref|ZP_06615039.1| molybdenum cofactor biosynthesis protein A [Staphylococcus epidermidis M23864:W2(grey)] gi|38258081|sp|Q8CNE6|MOAA_STAES RecName: Full=Molybdenum cofactor biosynthesis protein A gi|81673523|sp|Q5HLY1|MOAA_STAEQ RecName: Full=Molybdenum cofactor biosynthesis protein A gi|27316307|gb|AAO05482.1|AE016750_87 molybdenum cofactor biosynthesis protein A [Staphylococcus epidermidis ATCC 12228] gi|57638414|gb|AAW55202.1| molybdenum cofactor biosynthesis protein A [Staphylococcus epidermidis RP62A] gi|251804479|gb|EES57136.1| molybdenum (Mo2+) cofactor biosynthesis protein A [Staphylococcus epidermidis BCM-HMP0060] gi|281296089|gb|EFA88610.1| molybdenum cofactor biosynthesis protein A [Staphylococcus epidermidis SK135] gi|291317489|gb|EFE57910.1| molybdenum cofactor biosynthesis protein A [Staphylococcus epidermidis M23864:W2(grey)] gi|329737046|gb|EGG73301.1| molybdenum cofactor biosynthesis protein A [Staphylococcus epidermidis VCU045] Length = 340 Score = 38.9 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 24/94 (25%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D D+ + K ++L + + G K+ R +TGG Sbjct: 22 DRCNFRCDYCMPKEIFGD-DYTFL--PKNELLTFEELTRISKIYAQLGVKKIR---ITGG 75 Query: 94 EPLLQVD-------VPLIQALNKRGFEIAVETNG 120 EPLL+ + + LI + G TNG Sbjct: 76 EPLLRRNLYKLVEQLNLIDGIEDIGLT----TNG 105 >gi|14590060|ref|NP_142124.1| molybdenum cofactor biosynthesis protein A [Pyrococcus horikoshii OT3] gi|3256500|dbj|BAA29183.1| 316aa long hypothetical molybdenum cofactor biosynthesis protein [Pyrococcus horikoshii OT3] Length = 316 Score = 38.9 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCV 89 CNL C +C +G G +++ ++ + + Sbjct: 27 CNL-----------SCFYC-----HREGQLDGERFMTPEEIERIV---RVASRLGIKKVK 67 Query: 90 LTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 LTGGEP ++ D + +I+ L ++++ TNGT Sbjct: 68 LTGGEPTIRKDILEIIRRLKPYVVDLSLTTNGT 100 >gi|257082638|ref|ZP_05576999.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis E1Sol] gi|256990668|gb|EEU77970.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis E1Sol] Length = 324 Score = 38.9 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R S DR +C +C G+ K + D ++I I ++ + Sbjct: 15 VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 63 Query: 87 YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 LTGGEPL++ + + LI+ + + G E + + TNG Sbjct: 64 KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100 >gi|281411546|ref|YP_003345625.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10] gi|281372649|gb|ADA66211.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10] Length = 482 Score = 38.9 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 21/92 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + G+ G K + D++ D++++ G +T Sbjct: 120 CNL-----------NCVGC---YAGLYGRKYE-LSHDEVRDILKQANDLGIYFF---TIT 161 Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 GGEP + + + F + +NGT+ Sbjct: 162 GGEPFFWPHLMDIFEEFKDSYFLVY--SNGTL 191 >gi|119356568|ref|YP_911212.1| GTP cyclohydrolase subunit MoaA [Chlorobium phaeobacteroides DSM 266] gi|119353917|gb|ABL64788.1| GTP cyclohydrolase subunit MoaA [Chlorobium phaeobacteroides DSM 266] Length = 333 Score = 38.9 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 24/113 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + + ++ +I G K+ R+ T Sbjct: 30 CNL-----------RCTYCMREEHEYHTIADPELSSREVGKIIVALASIGIKKIRF---T 75 Query: 92 GGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134 GGEPLL+ D+ L++ G + +++ TNG + G+D I +S Sbjct: 76 GGEPLLRKDISVLVRQAKSIAGIKTVSLTTNGILLDRHLDELIDAGLDAINLS 128 >gi|300709764|ref|YP_003735578.1| Wyosine base formation domain protein [Halalkalicoccus jeotgali B3] gi|299123447|gb|ADJ13786.1| Wyosine base formation domain protein [Halalkalicoccus jeotgali B3] Length = 322 Score = 38.9 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 72 DLIEEQWITGEKEGRYCVLT-GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 D + + G E R+ ++ GEP L +P LI A + R + +NGT Sbjct: 106 DEVPREVFEGAMEPRHVAISLDGEPTLYPYLPELIDAFHDRDITTFLVSNGTDP 159 >gi|297155993|gb|ADI05705.1| hypothetical protein SBI_02584 [Streptomyces bingchenggensis BCW-1] Length = 322 Score = 38.9 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 20 CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 61 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + +++ L +R + + TN + + I SP + I G +E Sbjct: 62 GGEPLMHPQIDEIVRQLVERRKYVFLCTN-ALLLRKKIHKFKPSPYFAFAVHIDGLRE 118 >gi|254976882|ref|ZP_05273354.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium difficile QCD-66c26] gi|255094269|ref|ZP_05323747.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium difficile CIP 107932] gi|255316022|ref|ZP_05357605.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium difficile QCD-76w55] gi|255518679|ref|ZP_05386355.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium difficile QCD-97b34] gi|255651801|ref|ZP_05398703.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium difficile QCD-37x79] gi|260684827|ref|YP_003216112.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium difficile CD196] gi|260688485|ref|YP_003219619.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium difficile R20291] gi|306521589|ref|ZP_07407936.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium difficile QCD-32g58] gi|260210990|emb|CBA66282.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium difficile CD196] gi|260214502|emb|CBE06998.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium difficile R20291] Length = 302 Score = 38.9 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 11/100 (11%) Query: 32 CN----LWSGREQDRLSAQCRFCDT--DFVGIQGTK--GGRYNVDQLADLIEEQWITGEK 83 C + +C FC+T D+ + G Y+V L IE+ I E+ Sbjct: 64 CPHKAIYKGETKICLDQDKCEFCETCLDYCVNNAREIVGQEYSVRDLVKEIEKDRIFYEE 123 Query: 84 EGRYCVLTGGEPLLQVDV---PLIQALNKRGFEIAVETNG 120 G L+GGE + Q +I +G +A++T G Sbjct: 124 SGGGVTLSGGEVMAQDMDFICGVINMCKSKGIHVAIDTCG 163 >gi|256958884|ref|ZP_05563055.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis DS5] gi|257078915|ref|ZP_05573276.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis JH1] gi|256949380|gb|EEU66012.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis DS5] gi|256986945|gb|EEU74247.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis JH1] Length = 324 Score = 38.9 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R S DR +C +C G+ K + D ++I I ++ + Sbjct: 15 VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 63 Query: 87 YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 LTGGEPL++ + + LI+ + + G E + + TNG Sbjct: 64 KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100 >gi|239905086|ref|YP_002951825.1| hypothetical protein DMR_04480 [Desulfovibrio magneticus RS-1] gi|239794950|dbj|BAH73939.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 388 Score = 38.9 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 17/96 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR + G ++ LI+ TG + T Sbjct: 53 CNLAC--------KHCR----AEACLDPWPGE-FDTKDAKALIDTFPETG---SPIIIFT 96 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 GGEPLL+ D+ L++ R + NGT+ P+ Sbjct: 97 GGEPLLRPDIFDLVRHARSRDLRCVMAPNGTLVTPE 132 >gi|297588152|ref|ZP_06946796.1| radical SAM domain protein [Finegoldia magna ATCC 53516] gi|297574841|gb|EFH93561.1| radical SAM domain protein [Finegoldia magna ATCC 53516] Length = 399 Score = 38.9 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 18/105 (17%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C+ C + + + ++L ++ + +++GGEP+++ D Sbjct: 81 DRCNLKCKGC---YSEDERCDKKELSFNELTKVVGNLKPLNLE---NIIISGGEPMIRKD 134 Query: 101 VPLIQALNKRGFE----IAVETNGTIE-------PPQGIDWICVS 134 + I L K + I + TNGT+ +D + VS Sbjct: 135 LDKILELIKTELKPDNLIVI-TNGTVHNFDMLENIAPYVDVLSVS 178 >gi|283797432|ref|ZP_06346585.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp. M62/1] gi|291074790|gb|EFE12154.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp. M62/1] Length = 309 Score = 38.9 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 6/80 (7%) Query: 46 QCRFCDTDF--VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---D 100 C C TDF + G ++L ++ + E G L+GGE + Q Sbjct: 92 ACGSC-TDFCISNARSIVGEEMEAEELVRILRQDRQFYEDSGGGVTLSGGEAMAQDMDYM 150 Query: 101 VPLIQALNKRGFEIAVETNG 120 L+ L G + ++T G Sbjct: 151 ENLLVRLQSEGIPVNMDTCG 170 >gi|261350290|ref|ZP_05975707.1| molybdenum cofactor biosynthesis protein [Methanobrevibacter smithii DSM 2374] gi|288861074|gb|EFC93372.1| molybdenum cofactor biosynthesis protein [Methanobrevibacter smithii DSM 2374] Length = 498 Score = 38.9 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 17/92 (18%) Query: 32 CNLWSGR-EQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL + + C + D++ +++ Sbjct: 96 CNLRCPVCFANAAVSGCLY--------------EPTQDEIREMLRNLRNLKPHPTPAIQY 141 Query: 91 TGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120 GGEP ++ D+ L+ + GF + + TNG Sbjct: 142 AGGEPTVRKDLVELVAMAKEEGFTHVQIATNG 173 >gi|121535846|ref|ZP_01667645.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1] gi|121305561|gb|EAX46504.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1] Length = 457 Score = 38.9 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 17/69 (24%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +CR+C F G R ++A+ E I R+C + Sbjct: 104 CNL-----------RCRYC---FAGTGDFGHDRGLMTKEVAEQAVEFLIASSGPRRHCEI 149 Query: 91 T--GGEPLL 97 GGEPLL Sbjct: 150 DFFGGEPLL 158 >gi|303239482|ref|ZP_07326009.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] gi|302593045|gb|EFL62766.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] Length = 441 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 8/84 (9%) Query: 47 CRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LI 104 C+FC + G Q + + + +++ E TGGEP D+P LI Sbjct: 125 CKFC---YAGCTQKKDQEQLDTEGFKKVLDIIRYEAEVPS--VSFTGGEPSTYKDLPELI 179 Query: 105 Q-ALNKRGFEIAVETNGTIEPPQG 127 + A + + TNGT+ P Sbjct: 180 KYASKTNKMRVNLITNGTLITPGK 203 >gi|222054727|ref|YP_002537089.1| molybdenum cofactor biosynthesis protein A [Geobacter sp. FRC-32] gi|221564016|gb|ACM19988.1| molybdenum cofactor biosynthesis protein A [Geobacter sp. FRC-32] Length = 326 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 74/200 (37%), Gaps = 37/200 (18%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +C +C + + G + + L + + G ++ R +TG Sbjct: 12 NYLRLSVTDRCNLRCSYCMPEQGIEKLCHGDILSYEDLVSVARQAVAIGIEKIR---ITG 68 Query: 93 GEPLLQVDVPLIQALNKRG-----FEIAVETNGTIEPPQGIDW---------ICV-SPKA 137 GEPL++ D+ I+ L + ++ + TNG + D I + S K Sbjct: 69 GEPLVRRDI--IRFLKELSAVPGLKQLVLTTNGLLLAEMAEDLFKAGVQRLNISLDSLKE 126 Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA--------- 188 I G ++ V ++ + GF + ++ M G EE + A Sbjct: 127 QTFAHITRGGDVHRVLRGLDAAEA--AGFPPHKINMVVMRGINDEEVLDFAAMTLERPYA 184 Query: 189 ---ISYC--FQNPKWR-LSV 202 I Y Q WR LSV Sbjct: 185 VRFIEYMPTLQADNWRDLSV 204 >gi|73541471|ref|YP_295991.1| pyrroloquinoline quinone biosynthesis protein PqqE [Ralstonia eutropha JMP134] gi|72118884|gb|AAZ61147.1| Coenzyme PQQ biosynthesis protein E [Ralstonia eutropha JMP134] Length = 389 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R C FC D+ G Q D+ + G + Sbjct: 20 PLWLLAELTYRCPLHCAFCSNPVDYARHTAELG----TGQWCDVFTQARALGAVQLG--- 72 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 L+GGEPLL+ D+ L++ + GF + T+G Sbjct: 73 LSGGEPLLRKDLETLVRHAHGLGFYTNLITSG 104 >gi|32266519|ref|NP_860551.1| molybdenum cofactor biosynthesis protein A [Helicobacter hepaticus ATCC 51449] gi|32262570|gb|AAP77617.1| molybdenum cofactor biosynthesis protein A [Helicobacter hepaticus ATCC 51449] Length = 332 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 13/76 (17%) Query: 46 QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103 +C++C DT + + L ++E + + + +TGGEPLL+ D Sbjct: 24 RCQYCMPDTPESFVDE------SALPLPKMLEFIKLAIDNGIKKIRITGGEPLLRAD--- 74 Query: 104 IQALNKRGFEI--AVE 117 + A + +E +E Sbjct: 75 LSAFIAQIYEYAPHIE 90 >gi|317488728|ref|ZP_07947264.1| radical SAM superfamily protein [Eggerthella sp. 1_3_56FAA] gi|316912159|gb|EFV33732.1| radical SAM superfamily protein [Eggerthella sp. 1_3_56FAA] Length = 435 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 27/81 (33%), Gaps = 16/81 (19%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV-DQLADLIEEQWI 79 G F + CN C FC F Q R V D D ++ Sbjct: 85 GSKTFFLSLA-CN-----------RSCYFC---FNANQADYADRLRVNDAWRDEVDAFAD 129 Query: 80 TGEKEGRYCVLTGGEPLLQVD 100 E + LTGGEPLL D Sbjct: 130 ACGGEVTHVGLTGGEPLLHAD 150 >gi|256962021|ref|ZP_05566192.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis Merz96] gi|256952517|gb|EEU69149.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis Merz96] Length = 324 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R S DR +C +C G+ K + D ++I I ++ + Sbjct: 15 VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 63 Query: 87 YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 LTGGEPL++ + + LI+ + + G E + + TNG Sbjct: 64 KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100 >gi|255972893|ref|ZP_05423479.1| predicted protein [Enterococcus faecalis T1] gi|257422717|ref|ZP_05599707.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|255963911|gb|EET96387.1| predicted protein [Enterococcus faecalis T1] gi|257164541|gb|EEU94501.1| conserved hypothetical protein [Enterococcus faecalis X98] Length = 324 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R S DR +C +C G+ K + D ++I I ++ + Sbjct: 15 VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 63 Query: 87 YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 LTGGEPL++ + + LI+ + + G E + + TNG Sbjct: 64 KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100 >gi|229545922|ref|ZP_04434647.1| possible molybdenum (Mo2+) cofactor biosynthesis enzyme [Enterococcus faecalis TX1322] gi|256853030|ref|ZP_05558400.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|229308990|gb|EEN74977.1| possible molybdenum (Mo2+) cofactor biosynthesis enzyme [Enterococcus faecalis TX1322] gi|256711489|gb|EEU26527.1| conserved hypothetical protein [Enterococcus faecalis T8] Length = 324 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R S DR +C +C G+ K + D ++I I ++ + Sbjct: 15 VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 63 Query: 87 YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 LTGGEPL++ + + LI+ + + G E + + TNG Sbjct: 64 KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100 >gi|196234696|ref|ZP_03133509.1| molybdenum cofactor biosynthesis protein A [Chthoniobacter flavus Ellin428] gi|196221244|gb|EDY15801.1| molybdenum cofactor biosynthesis protein A [Chthoniobacter flavus Ellin428] Length = 337 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 19/143 (13%) Query: 41 DRLSAQCRFCDTDFVGIQG----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 DR + +C +C V G K +++A L G ++ R LTGGEP Sbjct: 22 DRCNFRCTYCMPKEVFGHGYDFLPKEEVLTFEEIARLARIFVELGAEKLR---LTGGEPT 78 Query: 97 LQVDVP-LIQALNK-RG-FEIAVETNGTIEPPQ-------GIDWICVSPKAGCDLKIKGG 146 L+ ++ L+ L RG ++ + TNG+ + G+ + VS A D+ + Sbjct: 79 LRRELHRLVSELAAIRGVHDLTLTTNGSRLVEEARNLRNAGLQRLTVSVDALDDVTFRAM 138 Query: 147 QELKLVFPQV--NVSPENYIGFD 167 ++ +V + GF Sbjct: 139 NDVSFPVHRVLRGIEAAREAGFA 161 >gi|169831504|ref|YP_001717486.1| radical SAM domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169638348|gb|ACA59854.1| Radical SAM domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 394 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C+ C + + LI++ E + Sbjct: 50 CNL-----------KCKHC---YASATAEPDPEELTTAEARRLIDDL---AEFRVPVLLF 92 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 +GGEPLL+ DV L +RG V TNGT Sbjct: 93 SGGEPLLRPDVYELAAYARERGLRPVVSTNGTF 125 >gi|167463117|ref|ZP_02328206.1| molybdenum cofactor biosynthesis protein A [Paenibacillus larvae subsp. larvae BRL-230010] Length = 334 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 71/178 (39%), Gaps = 28/178 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA----DLIEEQWITGEKEGRYCVLTGGEPL 96 DR + +C +C +G + D ++ + R LTGGEPL Sbjct: 22 DRCNLRCVYC-------MPEEGMEFEPDDHLLTFNEITTVVRVLARLGVRKLRLTGGEPL 74 Query: 97 LQVDVP-LIQALNK-RGFE-IAVETNGTIEPP-------QGIDWICV---SPKAGCDLKI 143 ++ + L+ L+ G E IA+ TNG P G+ I + S K I Sbjct: 75 VRKHIEDLVNRLSSIPGIEDIALTTNGMFLGPKAEQLKAAGLTRINISLDSLKEDRFAFI 134 Query: 144 KGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP-KWRL 200 G +LK V +N S + +GF+ + ++ M G +E + I +P + R Sbjct: 135 TRGGKLKKVLEGLNASAK--VGFNPIKLNVVLMKGINDDEIVDF-IELSRDHPIQVRF 189 >gi|16330606|ref|NP_441334.1| hypothetical protein slr1507 [Synechocystis sp. PCC 6803] gi|1653098|dbj|BAA18014.1| slr1507 [Synechocystis sp. PCC 6803] Length = 360 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 + GGEPLL + +++ L R I + TN I + +D SP + Sbjct: 94 GAPVVSIPGGEPLLHPQIDEIVRGLVARRKFIYLCTN-AILLEKSLDKFQPSPYLTFSVH 152 Query: 143 IKGGQE 148 + G +E Sbjct: 153 LDGPRE 158 >gi|300114034|ref|YP_003760609.1| hopanoid biosynthesis associated radical SAM protein HpnH [Nitrosococcus watsonii C-113] gi|299539971|gb|ADJ28288.1| hopanoid biosynthesis associated radical SAM protein HpnH [Nitrosococcus watsonii C-113] Length = 373 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C + R + + D ++E + Sbjct: 38 CNLAC--------AGCG----KIDYPEEILDRRLSAQECFDAVDECG------APIVSIP 79 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ ++P ++ + KR + + TN + + + SP + + G +E Sbjct: 80 GGEPLIHKEMPQIVAGIVKRKKFVYLCTN-ALLLSKRLKDYTPSPYLTFSVHLDGNRE 136 >gi|257416003|ref|ZP_05592997.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis AR01/DG] gi|257157831|gb|EEU87791.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis ARO1/DG] Length = 324 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R S DR +C +C G+ K + D ++I I ++ + Sbjct: 15 VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 63 Query: 87 YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 LTGGEPL++ + + LI+ + + G E + + TNG Sbjct: 64 KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100 >gi|307354666|ref|YP_003895717.1| Radical SAM domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307157899|gb|ADN37279.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571] Length = 426 Score = 38.9 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 31/112 (27%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV---DQLADLIEEQWITGEKEGRYC 88 CNL C +C + G + D+ + I+++ + + + Sbjct: 97 CNL-----------ACSYC---YEGRGTVVSEDMSPEIRDKAIEAIKKRALPTDCKSLKI 142 Query: 89 VLTGGEPLLQVDVPLI-----------QALNKRGFEIAVETNGTIEPPQGID 129 +L GGEPL+ D L+ L G + TNGT+ +D Sbjct: 143 MLFGGEPLMNPDTGLVIMKELSRWCGENGLKYEGSMV---TNGTLATRDLVD 191 >gi|329962473|ref|ZP_08300473.1| radical SAM domain protein [Bacteroides fluxus YIT 12057] gi|328530029|gb|EGF56917.1| radical SAM domain protein [Bacteroides fluxus YIT 12057] Length = 426 Score = 38.9 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 22/95 (23%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY-CV 89 GCN C +C +G + D++ D I + R Sbjct: 97 GCNF-----------ACPYC------FEGEHNNIFMTDEVEDGIIDFVKRKTDAKRIDVT 139 Query: 90 LTGGEPLL--QVDVPLIQALNKRG--FEIAVETNG 120 GGEPLL Q V L + + G + + TNG Sbjct: 140 WFGGEPLLAFQRIVSLTRKMQSLGLAYSAGMITNG 174 >gi|315221939|ref|ZP_07863850.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus anginosus F0211] gi|315188905|gb|EFU22609.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus anginosus F0211] Length = 265 Score = 38.9 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 21/99 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT + R D L + + + G Sbjct: 33 VF--LQGC-----------KMRCQYCHNPDT-WAMETNNSRERTVEDILQEALRYRGFWG 78 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 +K G ++GGE LLQ++ L + G ++T Sbjct: 79 KKGG--ITVSGGEALLQINFVTALFTKAKELGIHCTLDT 115 >gi|302385460|ref|YP_003821282.1| molybdenum cofactor biosynthesis protein A [Clostridium saccharolyticum WM1] gi|302196088|gb|ADL03659.1| molybdenum cofactor biosynthesis protein A [Clostridium saccharolyticum WM1] Length = 322 Score = 38.9 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 6/83 (7%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + + + G ++ + E G R +TGGEPL++ D Sbjct: 18 DRCNLRCVYCMPEEGIVPMSHGDILTYHEILRICEAGARLG---IRKVKVTGGEPLVRKD 74 Query: 101 VP-LIQALNK-RGFE-IAVETNG 120 + LI+ L G E + + TNG Sbjct: 75 IEVLIKGLQSIPGIEDVTMTTNG 97 >gi|255019723|ref|ZP_05291800.1| molybdenum cofactor biosynthesis protein A [Acidithiobacillus caldus ATCC 51756] gi|254970791|gb|EET28276.1| molybdenum cofactor biosynthesis protein A [Acidithiobacillus caldus ATCC 51756] Length = 347 Score = 38.9 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 7/78 (8%) Query: 46 QCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPL 103 +C++C GT R Q A+L+ + ++ LTGGEPL+ V Sbjct: 42 RCQYC----TPEDGTPYFDRAEHLQRAELVRLLQLFVGMGLQHLRLTGGEPLIHPHVVDY 97 Query: 104 IQALNKRGF-EIAVETNG 120 ++A G +I++ +NG Sbjct: 98 VRAAKAMGIGKISISSNG 115 >gi|293393981|ref|ZP_06638287.1| pyruvate formate-lyase 2-activating enzyme [Serratia odorifera DSM 4582] gi|291423541|gb|EFE96764.1| pyruvate formate-lyase 2-activating enzyme [Serratia odorifera DSM 4582] Length = 233 Score = 38.9 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%) Query: 88 CVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 L+GGE L+Q L+ L G A+ET G Sbjct: 62 VTLSGGEVLMQAGFATALLARLQALGINTAIETAG 96 >gi|256618973|ref|ZP_05475819.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis ATCC 4200] gi|256762400|ref|ZP_05502980.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis T3] gi|256598500|gb|EEU17676.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis ATCC 4200] gi|256683651|gb|EEU23346.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis T3] Length = 324 Score = 38.9 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R S DR +C +C G+ K + D ++I I ++ + Sbjct: 15 VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 63 Query: 87 YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 LTGGEPL++ + + LI+ + + G E + + TNG Sbjct: 64 KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100 >gi|255975948|ref|ZP_05426534.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis T2] gi|255968820|gb|EET99442.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis T2] Length = 324 Score = 38.9 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R S DR +C +C G+ K + D ++I I ++ + Sbjct: 15 VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 63 Query: 87 YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 LTGGEPL++ + + LI+ + + G E + + TNG Sbjct: 64 KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100 >gi|239983550|ref|ZP_04706074.1| hypothetical protein SalbJ_29215 [Streptomyces albus J1074] gi|291455365|ref|ZP_06594755.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291358314|gb|EFE85216.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 340 Score = 38.9 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 38 CNLAC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + ++ L + + + TN + + +D SP + I G +E Sbjct: 80 GGEPLMHPQIDEIVNQLVAKRKYVFLCTN-AMLMRKKMDKFIPSPYFAFAVHIDGLRE 136 >gi|77920509|ref|YP_358324.1| Fe-S oxidoreductases [Pelobacter carbinolicus DSM 2380] gi|77546592|gb|ABA90154.1| predicted Fe-S oxidoreductase [Pelobacter carbinolicus DSM 2380] Length = 293 Score = 38.9 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 16/99 (16%) Query: 46 QCRFCDTDFVGIQGT--KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP- 102 +CRFC F + + + +I E G + GGEPLL + Sbjct: 28 RCRFC---FARFKTERQESKEVGWQKSLAVIAEASRAGIAK---ITFAGGEPLLCPWLAD 81 Query: 103 LIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134 +++ G V TNG++ E + IDW+ +S Sbjct: 82 VLKHSKAFGMTTMVVTNGSLVTDRWLGENARYIDWLALS 120 >gi|89893625|ref|YP_517112.1| hypothetical protein DSY0879 [Desulfitobacterium hafniense Y51] gi|89333073|dbj|BAE82668.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 471 Score = 38.9 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 62/185 (33%), Gaps = 43/185 (23%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL + C + + TK ++L +E W T K Sbjct: 111 TQRCNLRCSVCFADAGSNCLERQEEVIVEDPTK------EELLSQLETLWNTIGKCNLQ- 163 Query: 89 VLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146 +GGEP L+ D+P +I+A G+ + TNG P DLK G Sbjct: 164 -FSGGEPTLRNDLPGIIRAARLMGYTFFQLNTNGIRLAE--------DPGFVRDLKEAG- 213 Query: 147 QELKLVFPQVN-VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205 L VF Q + VS + Y ++ Q AI C H Sbjct: 214 --LSTVFLQFDGVSDDVYERLRGQKLLAQ----------KQKAIENCR----------IH 251 Query: 206 KFIGI 210 K +GI Sbjct: 252 K-LGI 255 >gi|23016109|ref|ZP_00055869.1| COG1964: Predicted Fe-S oxidoreductases [Magnetospirillum magnetotacticum MS-1] Length = 456 Score = 38.9 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 14/103 (13%) Query: 31 GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G D C C T F + +G R ++ ++ +++ Sbjct: 81 GCPHDCGLCPDHEQHSCLALVEVTDSCGLDCPTCFAQSRPGRGHR-SLAEVEAMLDAVVR 139 Query: 80 TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNG 120 + ++GGEP + +++A R + + TNG Sbjct: 140 SEGGSPDIVQISGGEPADHPQILEILRAAKARPIRHVMLNTNG 182 >gi|289769139|ref|ZP_06528517.1| radical SAM domain-containing protein [Streptomyces lividans TK24] gi|289699338|gb|EFD66767.1| radical SAM domain-containing protein [Streptomyces lividans TK24] Length = 590 Score = 38.9 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 26/105 (24%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV------DQLADLIEEQWITGEKEG 85 CNL C +C + G G+ R D+ A I E Sbjct: 32 CNL-----------ACTYCY-LYEGPDGSWRDRPAAASAAVLDRTATRIAEHAERHALRD 79 Query: 86 RYCVLTGGEPLLQVDVPL------IQALNKRGFEIA--VETNGTI 122 VL GGEPLL PL ++ L RG ++ V+TN T+ Sbjct: 80 LALVLHGGEPLLAGAGPLAEVTGRVRELVPRGCQVHATVQTNATL 124 >gi|256785248|ref|ZP_05523679.1| hypothetical protein SlivT_12222 [Streptomyces lividans TK24] Length = 563 Score = 38.9 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 26/105 (24%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV------DQLADLIEEQWITGEKEG 85 CNL C +C + G G+ R D+ A I E Sbjct: 5 CNL-----------ACTYCY-LYEGPDGSWRDRPAAASAAVLDRTATRIAEHAERHALRD 52 Query: 86 RYCVLTGGEPLLQVDVPL------IQALNKRGFEIA--VETNGTI 122 VL GGEPLL PL ++ L RG ++ V+TN T+ Sbjct: 53 LALVLHGGEPLLAGAGPLAEVTGRVRELVPRGCQVHATVQTNATL 97 >gi|197118877|ref|YP_002139304.1| glycerol dehydratase-activating enzyme [Geobacter bemidjiensis Bem] gi|197088237|gb|ACH39508.1| glycerol dehydratase-activating enzyme, putative [Geobacter bemidjiensis Bem] Length = 294 Score = 38.9 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 6/102 (5%) Query: 47 CRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--D 100 C C D G + G +V++ + + E G +GGEPL Q Sbjct: 74 CSGCGACADACPTGARELVGRVMSVEEAMGSVLKDRFFYEDSGGGVTFSGGEPLSQPQFL 133 Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 L+ A + AV+T G P +D ++ DLK Sbjct: 134 KALLAACREEEIHTAVDTAGICAPESLLDIAPLTDLFLFDLK 175 >gi|266835|sp|Q01060|PQQE_ESCVU RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|148416|gb|AAA24822.1| gluconic acid [Pantoea agglomerans] Length = 377 Score = 38.9 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF + + +Q ++ + G + + Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFAAQEKE----LSTEQWIEVFRQARAMGSVQLGF-- 64 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 + GEPL++ D+P LI A GF + T+G Sbjct: 65 -SAGEPLVRKDLPELIAAARDLGFYTNLITSG 95 >gi|21223640|ref|NP_629419.1| hypothetical protein SCO5273 [Streptomyces coelicolor A3(2)] gi|9968723|emb|CAC05946.1| hypothetical protein [Streptomyces coelicolor A3(2)] Length = 620 Score = 38.9 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 26/105 (24%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV------DQLADLIEEQWITGEKEG 85 CNL C +C + G G+ R D+ A I E Sbjct: 71 CNL-----------ACTYCY-LYEGPDGSWRDRPAAASAAVLDRTATRIAEHAERHALRD 118 Query: 86 RYCVLTGGEPLLQVDVPL------IQALNKRGFEIA--VETNGTI 122 VL GGEPLL PL ++ L RG ++ V+TN T+ Sbjct: 119 LALVLHGGEPLLAGAGPLAEVTGRVRELVPRGCQVHATVQTNATL 163 >gi|313668419|ref|YP_004048703.1| hypothetical protein NLA_11150 [Neisseria lactamica ST-640] gi|313005881|emb|CBN87337.1| conserved hypothetical protein [Neisseria lactamica 020-06] Length = 369 Score = 38.9 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 21/99 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRY-- 87 CNL C +C +G G K + + D+ + + +G+ Sbjct: 13 CNL-----------NCTYCYVYHLGDDGWKDNPKLLSEKSIDDIEKSLFDLYSFQGKSFA 61 Query: 88 CVLTGGEPLLQVDVPLIQALNKRGFE------IAVETNG 120 VL GGEP L L L K ++++TNG Sbjct: 62 IVLHGGEPFLLPKHRLEYLLKKLRHRLPEYTTVSIQTNG 100 >gi|77460368|ref|YP_349875.1| molybdenum cofactor synthesis-like [Pseudomonas fluorescens Pf0-1] gi|77384371|gb|ABA75884.1| putative molybdenum cofactor biosynthesis protein A [Pseudomonas fluorescens Pf0-1] Length = 322 Score = 38.9 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 25/165 (15%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV---LTGGEPLLQVDVP 102 C +C + K D+L+ + + E +TGGEPL+ + Sbjct: 24 ACTYC------VPNGKRLVAAQDELSAEAMARGVAYLIEAAGIERLRITGGEPLVSPKLE 77 Query: 103 -LIQALNKRGFE-IAVETNG---TIEPPQGID----WICVS---PKAGCDLKIKGGQELK 150 + A+ K G E I++ TNG + P +D I VS AG I G +L Sbjct: 78 SFMSAVGKMGLEDISLTTNGQLLAKKLPLLVDAGLRRINVSLDTLDAGAFRSIARGGDLA 137 Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 V ++ + + + ++ P+ G L++ L + YC + Sbjct: 138 TVLDGMDQAAAAGMKI---KVNMVPLRGQNLDQVMPL-LDYCLER 178 >gi|294780074|ref|ZP_06745450.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis PC1.1] gi|294452826|gb|EFG21252.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis PC1.1] gi|323480628|gb|ADX80067.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis 62] Length = 321 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R S DR +C +C G+ K + D ++I I ++ + Sbjct: 12 VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 60 Query: 87 YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 LTGGEPL++ + + LI+ + + G E + + TNG Sbjct: 61 KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 97 >gi|257791825|ref|YP_003182431.1| Radical SAM domain-containing protein [Eggerthella lenta DSM 2243] gi|257475722|gb|ACV56042.1| Radical SAM domain protein [Eggerthella lenta DSM 2243] Length = 333 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 7/94 (7%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L S ++ + +C C + + + D+ +I+E G + + +GG Sbjct: 2 LVSWMTTNKCNLKCVHC---YQDAEEATDRELSTDEGKKMIDEIARAG---FKVMIFSGG 55 Query: 94 EPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 EPL++ D+ L+ + G +NGT+ P+ Sbjct: 56 EPLMRPDIYELVAHAARAGLRPVFGSNGTLITPE 89 >gi|261400665|ref|ZP_05986790.1| putative radical SAM [Neisseria lactamica ATCC 23970] gi|269209574|gb|EEZ76029.1| putative radical SAM [Neisseria lactamica ATCC 23970] Length = 369 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 21/99 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRY-- 87 CNL C +C +G G K + + D+ + + +G+ Sbjct: 13 CNL-----------NCTYCYVYHLGDDGWKDNPKLLSEKSIDDIEKSLFDLYSFQGKSFA 61 Query: 88 CVLTGGEPLLQVDVPLIQALNKRGFE------IAVETNG 120 VL GGEP L L L K ++++TNG Sbjct: 62 IVLHGGEPFLLPKHRLEYLLKKLRHRLPEYTTVSIQTNG 100 >gi|254478043|ref|ZP_05091427.1| radical SAM domain protein [Carboxydibrachium pacificum DSM 12653] gi|214036047|gb|EEB76737.1| radical SAM domain protein [Carboxydibrachium pacificum DSM 12653] Length = 436 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 26/109 (23%) Query: 26 FCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 F R S CNL +C +C FV K G V++ ++++ + Sbjct: 96 FMRISLTEKCNL-----------KCNYC---FVRKIHDKKGDMPVEKFSEIMLWFIKENK 141 Query: 83 KEGRYCVLTGGEPLLQVDV-----PLIQALNKRGFEI-AVE---TNGTI 122 GGEPLL++D+ L++ + G I VE TNGT+ Sbjct: 142 GSRPVIQYFGGEPLLRMDLIELGHLLLEKAKQNGEIIDYVEEIVTNGTL 190 >gi|160880809|ref|YP_001559777.1| radical SAM domain-containing protein [Clostridium phytofermentans ISDg] gi|160429475|gb|ABX43038.1| Radical SAM domain protein [Clostridium phytofermentans ISDg] Length = 464 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 29/111 (26%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGI---QGTKGGRYNVDQLADLIEEQWITGEKEG 85 GCNL +C +C + G + R + + I+ E + Sbjct: 92 TQGCNL-----------RCAYC--AYSGRYQNRTHSPKRMSFETAKRAIDMALSHSE-DT 137 Query: 86 RYCVLT--GGEPLLQVDVPLIQALNK--------RGFEIAVETNGTIEPPQ 126 ++ + + GGEPLL ++PLI+ K R ++ TNGT+ P Sbjct: 138 QFIIFSFYGGEPLL--ELPLIKRCVKYIKQQAPNRDIIFSMTTNGTLLTPD 186 >gi|312879890|ref|ZP_07739690.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260] gi|310783181|gb|EFQ23579.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260] Length = 373 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 42/115 (36%), Gaps = 17/115 (14%) Query: 13 LQGEGGHAGRVAVFCRF-----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67 LQG G G RF SG + DR +CR C + +G R+ Sbjct: 8 LQG-GSFPGDS---LRFGPRRGSG-PVVVWHLTDRCGLRCRHC---YA-EATPEGERF-- 56 Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 L + +L+GGEPL ++ + G +AV TNGT Sbjct: 57 VSLREGFRCLETFAAWGAPAVLLSGGEPLESPHGRAFLERGAELGLSLAVSTNGT 111 >gi|260221248|emb|CBA29622.1| Ribosomal RNA large subunit methyltransferase N [Curvibacter putative symbiont of Hydra magnipapillata] Length = 466 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 14/101 (13%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + CRFC T G + QL + ++ V+ G Sbjct: 104 CISSQAGCAVGCRFCSTGHQGFSRNLKTWEILAQLWFAEHFLRSHLGVSDRVISNVVMMG 163 Query: 93 -GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123 GEPL Q V L+ AL G+ + V T+G + Sbjct: 164 MGEPL-QNYVALVPALKVMLDDHGYGLSRRRVTVSTSGVVP 203 >gi|257089787|ref|ZP_05584148.1| molybdenum cofactor biosynthesis protein [Enterococcus faecalis CH188] gi|256998599|gb|EEU85119.1| molybdenum cofactor biosynthesis protein [Enterococcus faecalis CH188] Length = 324 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R S DR +C +C G+ K + D ++I I ++ + Sbjct: 15 VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 63 Query: 87 YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 LTGGEPL++ + + LI+ + + G E + + TNG Sbjct: 64 KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100 >gi|288920214|ref|ZP_06414529.1| Radical SAM domain protein [Frankia sp. EUN1f] gi|288348392|gb|EFC82654.1| Radical SAM domain protein [Frankia sp. EUN1f] Length = 412 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 42/122 (34%), Gaps = 19/122 (15%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A + Q R V A I + +L Sbjct: 47 CNLSCTYCYVYHLADQSW------RQQPVTMSRQVVAATATRIAAHAARHQLTQVEVILH 100 Query: 92 GGEPLLQVDVPLIQALNKR-----GFEIAVE----TNGTIEPPQGIDWICVS--PKAGCD 140 GGEPLL + + ++ G + AVE TNGT+ P +D +CV K G Sbjct: 101 GGEPLL-AGAAFLDHVARKVRSEVGPDTAVELTVQTNGTLLTPDFLD-LCVDLGMKVGVS 158 Query: 141 LK 142 + Sbjct: 159 VD 160 >gi|262370614|ref|ZP_06063939.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262314414|gb|EEY95456.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 384 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 14/115 (12%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIE----EQWITGEKEGRY 87 L +C +CD + G + L L+E + + Sbjct: 10 PLSLYIHMPWCVRKCPYCDFNSHAVPDGKLSLDLEQEYLHALVEDFKTQLEFAQGRHIHS 69 Query: 88 CVLTGGEPLL------QVDVPLIQALN--KRGFEIAVETN-GTIEPPQGIDWICV 133 + GG P L Q ++AL + EI +E N GT+E D++ V Sbjct: 70 VFIGGGTPSLISAQGYQWLFAQLKALLPFEVDCEITLEANPGTVEHDPFADYLAV 124 >gi|139474347|ref|YP_001129063.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes str. Manfredo] gi|134272594|emb|CAM30861.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes str. Manfredo] Length = 263 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 71/178 (39%), Gaps = 36/178 (20%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G +F GC L +CR+C DT + +K Sbjct: 16 TESFGSVDGPGIRFI----IF--LQGCKL-----------RCRYCHNPDTWEMETNNSKI 58 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVET 118 N D L + ++ + G+K G ++GGE +LQ+D I AL K G ++T Sbjct: 59 RTVN-DVLKEALQYKHFWGKKGG--ITVSGGEAMLQID--FITALFIEAKKLGIHTTLDT 113 Query: 119 NG-TIEPPQGIDWI-----CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 G T P + V+ DLK ++ K+V Q N + + + ++ Sbjct: 114 CGFTYRPTPEYHQVLDNLLAVTDLILLDLKEIDEKQHKIVTRQPNKNILQFARYLSDK 171 >gi|11499045|ref|NP_070279.1| pyruvate formate-lyase 2 activating enzyme (pflC) [Archaeoglobus fulgidus DSM 4304] gi|2649121|gb|AAB89799.1| pyruvate formate-lyase 2 activating enzyme (pflC) [Archaeoglobus fulgidus DSM 4304] Length = 302 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 + +++E + + G +GGEP Q D + L++ RG AV+T+G Sbjct: 108 TASHVMEIVERDRVFYKNSGGGVTFSGGEPYFQPDFLLSLLEECRNRGISAAVDTSG 164 >gi|295106858|emb|CBL04401.1| Predicted Fe-S oxidoreductases [Gordonibacter pamelaeae 7-10-1-b] Length = 335 Score = 38.9 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 7/95 (7%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L S ++ + +C C + + + D+ +I+E G + + +GG Sbjct: 2 LVSWMTTNKCNLKCVHC---YQDAEEASALELSTDEGRKMIDEIARAG---FKVMIFSGG 55 Query: 94 EPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127 EPL++ D+ L+ RG +NGT+ P+ Sbjct: 56 EPLMRPDIYELVAHAASRGLRPVFGSNGTLITPEA 90 >gi|282901597|ref|ZP_06309516.1| Radical SAM [Cylindrospermopsis raciborskii CS-505] gi|281193523|gb|EFA68501.1| Radical SAM [Cylindrospermopsis raciborskii CS-505] Length = 338 Score = 38.9 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + +Q +EE + Sbjct: 38 CNL-----------ACSGCG-KIQHPTEVLKQNLSPEQCFAAVEECG------APVVSIP 79 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPLL + ++Q L R + + TNG + + + SP + + G +E Sbjct: 80 GGEPLLHPQIDQIVQGLVDRKKYVYLCTNG-LLLEKSLHRFKPSPYLTFSVHLDGMKE 136 >gi|257062911|ref|YP_003142583.1| GTP cyclohydrolase subunit MoaA [Slackia heliotrinireducens DSM 20476] gi|256790564|gb|ACV21234.1| GTP cyclohydrolase subunit MoaA [Slackia heliotrinireducens DSM 20476] Length = 333 Score = 38.9 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 17/105 (16%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +CR+C + + +++++ +I G R LTGGEPL++ Sbjct: 18 DRCNLRCRYCMPEEGVSALSHEDILSLEEIERIIRVAAGMGISRLR---LTGGEPLVRKG 74 Query: 101 VP-LI-QALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLK 142 + LI +A+ G E +A+ TNG + PK +LK Sbjct: 75 IAGLIKEAMRTPGIESVALTTNGILL-----------PKMAAELK 108 >gi|225873965|ref|YP_002755424.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196] gi|225793882|gb|ACO33972.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196] Length = 347 Score = 38.9 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 20/98 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C L +++ ++ Sbjct: 53 CNL-----------SCAYC--------NEYDDVSKPVPLEEMLRRIDHLARLGTSIITIS 93 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGI 128 GGEP L ++ +I + G + TNG P+ I Sbjct: 94 GGEPTLHPELDQIIARIRHHGRIAGMITNGYYLVPERI 131 >gi|83310383|ref|YP_420647.1| lysine 2,3-aminomutase [Magnetospirillum magneticum AMB-1] gi|82945224|dbj|BAE50088.1| Lysine 2,3-aminomutase [Magnetospirillum magneticum AMB-1] Length = 344 Score = 38.9 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 4/71 (5%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 CRFC G ++ + ++ G E R +LTGG+PL+ L Sbjct: 106 CRFC--FRRARVGDGDATMTEAEIDTALA--YVAGRPEIREVILTGGDPLMLPPPRLAAL 161 Query: 107 LNKRGFEIAVE 117 L + G VE Sbjct: 162 LGRIGAIAHVE 172 >gi|301057213|ref|ZP_07198342.1| radical SAM domain protein [delta proteobacterium NaphS2] gi|300448664|gb|EFK12300.1| radical SAM domain protein [delta proteobacterium NaphS2] Length = 392 Score = 38.9 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 17/97 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + + Q G +Q LI++ + + + Sbjct: 50 CNLECVHCYAKAALQ-------------KSKGELTHEQGLRLIDDL---ADFGSPVILFS 93 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127 GGEPL++ D+ L +G + TNGT+ PQ Sbjct: 94 GGEPLMRPDLVELAHYAVSKGMRAVISTNGTLITPQK 130 >gi|302548831|ref|ZP_07301173.1| predicted protein [Streptomyces viridochromogenes DSM 40736] gi|302466449|gb|EFL29542.1| predicted protein [Streptomyces viridochromogenes DSM 40736] Length = 358 Score = 38.9 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 5/66 (7%) Query: 60 TKGGRYNVDQLAD----LIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEI 114 T G + ++A + G TGGEP L D+P LI + G + Sbjct: 54 TNGADFLPARIAADADFATALAAVRGSLPTNEVHFTGGEPTLHPDLPGLITIARRLGLTV 113 Query: 115 AVETNG 120 + +NG Sbjct: 114 GLTSNG 119 >gi|229550115|ref|ZP_04438840.1| possible molybdenum (Mo2+) cofactor biosynthesis enzyme [Enterococcus faecalis ATCC 29200] gi|229304819|gb|EEN70815.1| possible molybdenum (Mo2+) cofactor biosynthesis enzyme [Enterococcus faecalis ATCC 29200] Length = 321 Score = 38.9 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R S DR +C +C G+ K + D ++I I ++ + Sbjct: 12 VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 60 Query: 87 YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 LTGGEPL++ + + LI+ + + G E + + TNG Sbjct: 61 KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 97 >gi|228997029|ref|ZP_04156660.1| Molybdenum cofactor biosynthesis protein A [Bacillus mycoides Rock3-17] gi|228762654|gb|EEM11570.1| Molybdenum cofactor biosynthesis protein A [Bacillus mycoides Rock3-17] Length = 307 Score = 38.9 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 21/152 (13%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ ++P LIQ LNK G E I + Sbjct: 14 SNDKILSFDEIERVARIFVSLGVRKLR---ITGGEPLLRKNLPELIQRLNKIDGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVSPKAGCDLKIKGGQ----ELKLVFPQVNVSPENYIG 165 TNG++ D + VS + + + ++K V + + E + Sbjct: 71 TTNGSLLKKFAPDLYKAGLSRVTVSLDSLDEERFSYLNGNRSKVKTVLAGIQAAAEVGMK 130 Query: 166 FDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197 +Q G ++ +A Y +N Sbjct: 131 IKM-NIVVQ--KGKNEQDIVQMA-QYFKENNH 158 >gi|255658569|ref|ZP_05403978.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Mitsuokella multacida DSM 20544] gi|260849375|gb|EEX69382.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Mitsuokella multacida DSM 20544] Length = 170 Score = 38.9 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 21/93 (22%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F GC +C C G + L I + + Sbjct: 26 TIFV--QGC-----------KRRCPNCQNPETQ-PLEGGHEETLAALLQKIRQNPLLTG- 70 Query: 84 EGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114 +GGEP LQ L + ++ G +I Sbjct: 71 ----VTFSGGEPFLQCAPLAKLAKEIHAMGLDI 99 >gi|220929027|ref|YP_002505936.1| molybdenum cofactor biosynthesis protein A [Clostridium cellulolyticum H10] gi|219999355|gb|ACL75956.1| molybdenum cofactor biosynthesis protein A [Clostridium cellulolyticum H10] Length = 328 Score = 38.9 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 6/92 (6%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + ++ + +++ + + +TGGEPLL+ D Sbjct: 21 DRCNLRCIYC---IPQFGVLQTREEDMLSIKEIVSFVKVASSHGIKKIKITGGEPLLRKD 77 Query: 101 V-PLIQALNKRGF--EIAVETNGTIEPPQGID 129 + L+ + + +I++ TNG + D Sbjct: 78 IVSLVSCIKEIDSITDISMTTNGVLLKKYASD 109 >gi|94969161|ref|YP_591209.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis Ellin345] gi|94551211|gb|ABF41135.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis Ellin345] Length = 479 Score = 38.9 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 12/102 (11%) Query: 31 GCNLWSGREQDRLSAQCR----FCD----TDFVGIQGTKGGRYNVDQLADL--IEEQWIT 80 GC G D C CD + + + R + LA + + + + Sbjct: 82 GCPYDCGLCSDHEQHSCLSLIEICDHCNLSCPICYAESGPSRQSYRSLAQIEKMLDAVVR 141 Query: 81 GEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNG 120 E ++GGEP + ++ R + V TNG Sbjct: 142 NELHPDVVQISGGEPTIHPQFFEVLDLAKARPIRHLMVNTNG 183 >gi|331002311|ref|ZP_08325829.1| hypothetical protein HMPREF0491_00691 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410127|gb|EGG89561.1| hypothetical protein HMPREF0491_00691 [Lachnospiraceae oral taxon 107 str. F0167] Length = 280 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 59/199 (29%), Gaps = 44/199 (22%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46 F ++ G G R A+F GCN + + Sbjct: 12 FSSVDGPGN---RAAIF--LQGCNFNCRYCHNPETRNHCINCMDCVPGCPTNALKNNNGK 66 Query: 47 -------CRFCD--TDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 C CD + T R + + I E R +GGE + Sbjct: 67 VEFYPEKCIGCDNCINICKYGATPRIVRLTSRETFEKICENLPF----IRGVTFSGGECM 122 Query: 97 LQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154 L D + ++ +++NG+++ + + + V+ D+K E V Sbjct: 123 LYPDFMREVFSLCKEKNLGTLIDSNGSVDFKKHLGLLEVTDGVMLDIKAYDFDEHIKVTD 182 Query: 155 QVNVSPENYIGFDFERFSL 173 + N F ER L Sbjct: 183 KGNDIVLKNALFLAERGKL 201 >gi|282163409|ref|YP_003355794.1| hypothetical protein MCP_0739 [Methanocella paludicola SANAE] gi|282155723|dbj|BAI60811.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 362 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 15/90 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR C +D K G + ++ + + +T Sbjct: 41 CNL-----------RCRHCGSDCTV---PKPGELSTGEIKAAFKSIASDYDARSIMVAVT 86 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 GGEPLL+ D+ ++ + GF + TNG Sbjct: 87 GGEPLLRKDLFDVMGYAHGLGFPWGMVTNG 116 >gi|116750478|ref|YP_847165.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116699542|gb|ABK18730.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB] Length = 393 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 8/96 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 + R + +C C + + ++++ + + + Sbjct: 40 PVVVWNVTRRCNLRCVHC---YAHARDQVFPDEMTGAEGKKVLDDL---AQFGTPVVLFS 93 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 GGEPL++ D+ L ++G + TNGT+ P Sbjct: 94 GGEPLMRPDLVELAAYAVEKGMRAVISTNGTLITPA 129 >gi|327535035|gb|AEA93869.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis OG1RF] Length = 321 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R S DR +C +C G+ K + D ++I I ++ + Sbjct: 12 VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 60 Query: 87 YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 LTGGEPL++ + + LI+ + + G E + + TNG Sbjct: 61 KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 97 >gi|257086842|ref|ZP_05581203.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis D6] gi|256994872|gb|EEU82174.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis D6] Length = 324 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R S DR +C +C G+ K + D ++I I ++ + Sbjct: 15 VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 63 Query: 87 YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 LTGGEPL++ + + LI+ + + G E + + TNG Sbjct: 64 KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100 >gi|220917203|ref|YP_002492507.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter dehalogenans 2CP-1] gi|219955057|gb|ACL65441.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter dehalogenans 2CP-1] Length = 334 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 17/105 (16%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 GR V+ R S DR + +C +C T D++A L+ I Sbjct: 18 GRRIVYLRLS--------LTDRCNFRCSYC---SPAAPETHEDPLARDEVARLV---RIF 63 Query: 81 GEKEGRYCVLTGGEPLLQVD-VPLIQAL-NKRGF-EIAVETNGTI 122 G R LTGGEP L+ D + +I+ + G E+A+ TNG + Sbjct: 64 GGLGIRRVRLTGGEPTLRRDVLDVIREVARAPGIEEVALTTNGHL 108 >gi|197122436|ref|YP_002134387.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter sp. K] gi|196172285|gb|ACG73258.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter sp. K] Length = 334 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 17/105 (16%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 GR V+ R S DR + +C +C T D++A L+ I Sbjct: 18 GRRIVYLRLS--------LTDRCNFRCSYC---SPAAPETHEDPLARDEVARLV---RIF 63 Query: 81 GEKEGRYCVLTGGEPLLQVD-VPLIQAL-NKRGF-EIAVETNGTI 122 G R LTGGEP L+ D + +I+ + G E+A+ TNG + Sbjct: 64 GGLGIRRVRLTGGEPTLRRDVLDVIREVARAPGIEEVALTTNGHL 108 >gi|86158254|ref|YP_465039.1| GTP cyclohydrolase subunit MoaA [Anaeromyxobacter dehalogenans 2CP-C] gi|85774765|gb|ABC81602.1| GTP cyclohydrolase subunit MoaA [Anaeromyxobacter dehalogenans 2CP-C] Length = 334 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 17/105 (16%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 GR V+ R S DR + +C +C T D++A L+ I Sbjct: 18 GRRIVYLRLS--------LTDRCNFRCSYC---SPAAPETHEDPLARDEVARLV---RIF 63 Query: 81 GEKEGRYCVLTGGEPLLQVD-VPLIQAL-NKRGF-EIAVETNGTI 122 G R LTGGEP L+ D + +I+ + G E+A+ TNG + Sbjct: 64 GGLGIRRVRLTGGEPTLRRDVLDVIREVARAPGIEEVALTTNGHL 108 >gi|27378117|ref|NP_769646.1| hypothetical protein bll3006 [Bradyrhizobium japonicum USDA 110] gi|27351264|dbj|BAC48271.1| bll3006 [Bradyrhizobium japonicum USDA 110] Length = 386 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 22/116 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R + D +E + Sbjct: 38 CNL-----------ACVGCGKIDY--PDAILNRRMTAQECWDAADECG------APMVAI 78 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 GGEPL+ ++ +++ L R +++ TN + + +D SP + + G Sbjct: 79 PGGEPLIHKEIGEIVRGLVARKKFVSLCTN-ALLLEKKLDLFEPSPYLFFSVHLDG 133 >gi|319946489|ref|ZP_08020725.1| pyruvate formate-lyase activating enzyme [Streptococcus australis ATCC 700641] gi|319747320|gb|EFV99577.1| pyruvate formate-lyase activating enzyme [Streptococcus australis ATCC 700641] Length = 264 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 21/99 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT + R D L + + + G Sbjct: 33 VF--LQGC-----------QMRCQYCHNPDT-WAMETNMSRERTVDDVLEEALRYRGFWG 78 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 +K G ++GGE LLQ+D + L + G ++T Sbjct: 79 QKGG--ITVSGGEALLQIDFLIALFTKAQELGIHCTLDT 115 >gi|319957591|ref|YP_004168854.1| GTP cyclohydrolase subunit moaa [Nitratifractor salsuginis DSM 16511] gi|319419995|gb|ADV47105.1| GTP cyclohydrolase subunit MoaA [Nitratifractor salsuginis DSM 16511] Length = 322 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 10/93 (10%) Query: 33 NLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 N +R + +C++C + F + + + L I+ G + R L Sbjct: 11 NYLRVSVTERCNFRCQYCMPEKPFSWVPQEN--LLSFEDLFKFIKIAIDEGVSKIR---L 65 Query: 91 TGGEPLL-QVDVPLIQALNK--RGFEIAVETNG 120 TGGEPLL Q ++ ++ ++A+ TNG Sbjct: 66 TGGEPLLRQDLDRFVKMIHDYKPDIDLALTTNG 98 >gi|313204156|ref|YP_004042813.1| radical sam domain protein [Paludibacter propionicigenes WB4] gi|312443472|gb|ADQ79828.1| Radical SAM domain protein [Paludibacter propionicigenes WB4] Length = 282 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 9/75 (12%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQ 105 C FC F + TK D+ ++++ + + GEPLL ++ Sbjct: 18 CSFC---FKTSRATKF--MTPDEFQTIVDKIRPFTNYIYLHVL---GEPLLHPQLDEILS 69 Query: 106 ALNKRGFEIAVETNG 120 G I + TNG Sbjct: 70 IAETAGLNINITTNG 84 >gi|308274193|emb|CBX30792.1| hypothetical protein N47_E43040 [uncultured Desulfobacterium sp.] Length = 455 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 58/178 (32%), Gaps = 41/178 (23%) Query: 31 GCNLWSGREQ--------------DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 GC G R + C++C F + + ++ + + Sbjct: 77 GCPFDCGLCALHRQITCTALLEITQRCNLSCKYC---FASSKKSAVPDPDIQTIEFWFKR 133 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNGTIEPPQGIDWICVS 134 L+GGEP L+ D+ +I+ +GF I + TNG + + D+ Sbjct: 134 VREAAPAC--NIQLSGGEPTLREDLFQIIEMGRNKGFGFIQLNTNG-LRLAEQQDYAA-- 188 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC 192 K+K + F +S E Y+ G L N LAI C Sbjct: 189 -------KLKEAGLASVFFQFDGLSDETYLALR----------GQKLLANKLLAIEQC 229 >gi|20089678|ref|NP_615753.1| tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein [Methanosarcina acetivorans C2A] gi|19914605|gb|AAM04233.1| tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein [Methanosarcina acetivorans C2A] Length = 381 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 20/90 (22%) Query: 27 CRF---SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 R + CNL CR+C + + + L +I E G + Sbjct: 43 IRLETNTSCNL-----------HCRYC---YAQSGEDSVKIADFNVLKRIISEAKELGIR 88 Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGF 112 V+ GGEP L + LI ++ G Sbjct: 89 S--VVVIGGGEPTLYPNFRELIAYIDSLGI 116 >gi|14330293|emb|CAC40787.1| MoaA protein [Eubacterium acidaminophilum] Length = 325 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 6/91 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +C +C + +++L ++ G + R +TG Sbjct: 16 NYLRISVTDRCNLRCMYCMPQEGIPKRAHHDIMTLEELQEVAVALVELGIDKIR---ITG 72 Query: 93 GEPLLQVDVP-LIQALNK-RGF-EIAVETNG 120 GEPL++ + L++ L+K G EI + TNG Sbjct: 73 GEPLVRKGIVGLVRELSKCEGLNEITLTTNG 103 >gi|224477241|ref|YP_002634847.1| Molybdenum cofactor biosynthesis protein A [Staphylococcus carnosus subsp. carnosus TM300] gi|7674139|sp|Q9ZIM6|MOAA_STACT RecName: Full=Molybdenum cofactor biosynthesis protein A gi|3955209|gb|AAC83144.1| MoaA [Staphylococcus carnosus] gi|222421848|emb|CAL28662.1| Molybdenum cofactor biosynthesis protein A [Staphylococcus carnosus subsp. carnosus TM300] Length = 340 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D DFV + + ++ + + + +TGG Sbjct: 22 DRCNFRCDYCMPKEIFGD-DFVFLPKDELLSFSEMERIARVYTHLGVKKIR-----ITGG 75 Query: 94 EPLLQVDV-PLIQALNK-RGFE-IAVETNG 120 EPL++ D+ LI ALN+ G E I + TNG Sbjct: 76 EPLMRRDLYKLIAALNEIEGVEDIGLTTNG 105 >gi|301106560|ref|XP_002902363.1| molybdenum cofactor biosynthesis protein 1 A [Phytophthora infestans T30-4] gi|262098983|gb|EEY57035.1| molybdenum cofactor biosynthesis protein 1 A [Phytophthora infestans T30-4] Length = 301 Score = 38.9 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFE-IAVETNG 120 N+ ++I + LTGGEPLL+ D+ L+ L G E + + TNG Sbjct: 13 NLMTTLEIIRLAKVFASSGITRIRLTGGEPLLRRDLAELVAQLRAIPGIESVGITTNG 70 >gi|291326420|ref|ZP_06124398.2| pyruvate formate-lyase 1-activating enzyme [Providencia rettgeri DSM 1131] gi|291314456|gb|EFE54909.1| pyruvate formate-lyase 1-activating enzyme [Providencia rettgeri DSM 1131] Length = 265 Score = 38.9 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 56/183 (30%), Gaps = 42/183 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G V++L Sbjct: 44 VF--FQGC-----------LMRCLYCHNRDT----WDTHGGNIVTVEELMKEAVTYRHFM 86 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI----EPPQGIDWICVSP 135 G +GGE +LQ + +A K ++TNG + + + Sbjct: 87 NATGGGVTASGGEAILQAEFVRDWFRACKKENIHTCLDTNGFVRRYDPVIDELMDVT--- 143 Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 DL + +++ Q V N+ +F R+ + N + Y Sbjct: 144 ----DLVMLDLKQIDDEIHQKLVGVSNHRTLEFARY--------LAKRNQKTWVRYVVV- 190 Query: 196 PKW 198 P W Sbjct: 191 PGW 193 >gi|152969099|ref|YP_001334208.1| putative iron-sulfur modifier protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|329998396|ref|ZP_08303095.1| anaerobic sulfatase maturase [Klebsiella sp. MS 92-3] gi|150953948|gb|ABR75978.1| putative iron-sulfur modifier protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328538696|gb|EGF64788.1| anaerobic sulfatase maturase [Klebsiella sp. MS 92-3] Length = 395 Score = 38.9 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 26/102 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC--V 89 CNL CR+C + T + + +L I R V Sbjct: 35 CNL-----------ACRYC---YYPQDETSVNKMDDARLEQFIRRYIAAQPAGAREINFV 80 Query: 90 LTGGEPLLQVDVPLIQ---ALNKR----GFEI--AVETNGTI 122 GGEPLL + + AL R G I +++TNGT+ Sbjct: 81 WQGGEPLL-AGLSFYKKALALQARYAPDGVTISNSLQTNGTL 121 >gi|254254758|ref|ZP_04948075.1| hypothetical protein BDAG_04075 [Burkholderia dolosa AUO158] gi|124899403|gb|EAY71246.1| hypothetical protein BDAG_04075 [Burkholderia dolosa AUO158] Length = 386 Score = 38.9 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 22/120 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R +V++ + ++E + Sbjct: 38 CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLEAVDECG------APVVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEPLL ++P +++ + KR + + TN + + +D SP + + G +E+ Sbjct: 79 AGGEPLLHKEMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYQPSPYFVWSVHLDGDKEM 137 >gi|73668539|ref|YP_304554.1| tRNA-modifying enzyme [Methanosarcina barkeri str. Fusaro] gi|72395701|gb|AAZ69974.1| Fe-S oxidoreductase [Methanosarcina barkeri str. Fusaro] Length = 345 Score = 38.9 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 + I+E+W+ G + + GEP +P LI+ KRGF + TNGT+ Sbjct: 142 NAIKERWLEGNEPNNVAISLSGEPTFYPYLPELIEEYKKRGFTTFLVTNGTVP 194 >gi|150018612|ref|YP_001310866.1| molybdenum cofactor biosynthesis protein A [Clostridium beijerinckii NCIMB 8052] gi|149905077|gb|ABR35910.1| molybdenum cofactor biosynthesis protein A [Clostridium beijerinckii NCIMB 8052] Length = 318 Score = 38.9 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 8/92 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 N D + +C++C GI ++++ + + G + R +T Sbjct: 10 NYLRISVTDLCNLRCKYC-MPEKGIDKMWHKEILTLEEIEAITQSFVELGVDKVR---IT 65 Query: 92 GGEPLLQVD-VPLIQALNKRG--FEIAVETNG 120 GGEPL++ + + LI + K G ++A+ TNG Sbjct: 66 GGEPLVRKNILKLIDGIGKIGGVRDLAMTTNG 97 >gi|325265158|ref|ZP_08131884.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp. D5] gi|324029562|gb|EGB90851.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp. D5] Length = 302 Score = 38.9 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 6/80 (7%) Query: 46 QCRFCDTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL---LQVD 100 C C TD+ + + G Y VD+L + + + E+ G L+GGE + + Sbjct: 84 ACGIC-TDYCNLNLREIAGKEYTVDELVKELRKDEMFYEESGGGVTLSGGEVMTADMDYL 142 Query: 101 VPLIQALNKRGFEIAVETNG 120 L++ L+ G + ++T G Sbjct: 143 EALVKKLHHFGISVTIDTCG 162 >gi|294011401|ref|YP_003544861.1| molybdenum cofactor biosynthesis protein A [Sphingobium japonicum UT26S] gi|292674731|dbj|BAI96249.1| molybdenum cofactor biosynthesis protein A [Sphingobium japonicum UT26S] Length = 334 Score = 38.9 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 13/88 (14%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +CR+C + + T R + L ++ + + R LTGGEPL++ D Sbjct: 26 DRCDLRCRYC----MAERMTFLPRDQILTLEEIALLADLFIARGVRRIRLTGGEPLVRRD 81 Query: 101 VPLIQALNKRGFEI-------AVETNGT 121 + I + + G + + TNGT Sbjct: 82 I--IDLVRRIGRHVGAGLDELTLTTNGT 107 >gi|152995344|ref|YP_001340179.1| molybdenum cofactor biosynthesis protein A [Marinomonas sp. MWYL1] gi|150836268|gb|ABR70244.1| molybdenum cofactor biosynthesis protein A [Marinomonas sp. MWYL1] Length = 341 Score = 38.9 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 15/88 (17%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C + T R ++ L +++ + +TGGEPL++ + Sbjct: 23 DRCDFRCTYC----MDEDVTFMPRDHILSLEEIVHVAKTFISMGTKRIRITGGEPLVRKN 78 Query: 101 VPL-------IQALNKRGFEIAVETNGT 121 + L E+ + TNG+ Sbjct: 79 ILWAIEQIANTDGLE----ELTITTNGS 102 >gi|51246024|ref|YP_065908.1| molybdenum cofactor biosynthesis protein A (MoaA) [Desulfotalea psychrophila LSv54] gi|50877061|emb|CAG36901.1| probable molybdenum cofactor biosynthesis protein A (MoaA) [Desulfotalea psychrophila LSv54] Length = 408 Score = 38.9 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 7/89 (7%) Query: 41 DRLSAQCRFC---DTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 DR + +C +C D D G ++ +++ + R LTGGEPL Sbjct: 88 DRCNLRCIYCMPEDEDGRHTTTGVILQHADLLTYEEILRVSRLATAMGIRKIRLTGGEPL 147 Query: 97 LQVD-VPLIQAL-NKRGFE-IAVETNGTI 122 ++ + IQ L RG E +++ TNG + Sbjct: 148 VRRGVLEFIQELKKDRGLEQLSLTTNGVL 176 >gi|332110434|gb|EGJ10757.1| ribonucleoside-triphosphate reductase, anaerobic-like protein [Rubrivivax benzoatilyticus JA2] Length = 230 Score = 38.9 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 26/119 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 VF GC +C +C + G G + D++ + + + Sbjct: 28 VFV--QGCP-----------WRCVYCHNPALQRRDGAAGPGW--DEVVATLARRRGLLDG 72 Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPK 136 V +GGEP L +P + GF + + + G +DW+ + K Sbjct: 73 ----VVFSGGEPTLDPALPEAVATARGLGFAVGLHSAGIYPQKLAALLPQLDWVGLDLK 127 >gi|325968826|ref|YP_004245018.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28] gi|323708029|gb|ADY01516.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28] Length = 412 Score = 38.9 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 43/92 (46%), Gaps = 8/92 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L R + +C C ++ IQG ++ ++++ E +++ Sbjct: 36 PLIFWNITYRCNLKCIHC---YINAIQGISRDELTTEEALRVVDD---AHELRTPLLIIS 89 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPL++ D+ +++ + ++++ TNGT+ Sbjct: 90 GGEPLVREDITEVMRRASDYDIKVSLSTNGTL 121 >gi|320104529|ref|YP_004180120.1| GTP cyclohydrolase subunit MoaA [Isosphaera pallida ATCC 43644] gi|319751811|gb|ADV63571.1| GTP cyclohydrolase subunit MoaA [Isosphaera pallida ATCC 43644] Length = 341 Score = 38.9 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 64/170 (37%), Gaps = 24/170 (14%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + + +++ ++ G + R LTGGEPL++ D Sbjct: 33 DRCNIRCVYC-MPETVQFLPRAEILSFEEIERVVRVAVGLGINKLR---LTGGEPLVRRD 88 Query: 101 V-PLIQALNK-RGFE-IAVETNGTIEPPQG------------IDWICVSPKAGCDLKIKG 145 + L+ L G + + + TNG + P + + P + +L Sbjct: 89 LTKLVARLTAIPGIQDVGLTTNGLLLGPLAQPLWDAGLRRINVSLDTLDPVSFREL--TR 146 Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 L+ V + GFD + + + G + LA +C ++ Sbjct: 147 RDGLEQVIE--GILAAKRAGFDPVKINAVAIKGVTESQVVPLA-RFCREH 193 >gi|239939475|ref|ZP_04691412.1| molybdenum cofactor biosynthesis protein A [Streptomyces roseosporus NRRL 15998] gi|239985964|ref|ZP_04706628.1| molybdenum cofactor biosynthesis protein A [Streptomyces roseosporus NRRL 11379] gi|291442905|ref|ZP_06582295.1| molybdenum cofactor biosynthesis protein A [Streptomyces roseosporus NRRL 15998] gi|291345852|gb|EFE72756.1| molybdenum cofactor biosynthesis protein A [Streptomyces roseosporus NRRL 15998] Length = 339 Score = 38.9 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIE-EQWITGEKEGRYCVLTGGEPLLQ 98 DR + +C +C G+ + D++ L++ G E R LTGGEPLL+ Sbjct: 31 DRCNLRCTYC-MPAEGLDWLPRPELLTDDEVVRLVDVATRRLGITEVR---LTGGEPLLR 86 Query: 99 VDVP-LIQALNKR--GFEIAVETNG 120 +P L+ L+ E+++ TNG Sbjct: 87 RGLPGLVARLHALPDPPELSLTTNG 111 >gi|115622853|ref|XP_791955.2| PREDICTED: similar to MGC84142 protein, partial [Strongylocentrotus purpuratus] Length = 267 Score = 38.9 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 13/112 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N +R + +C++C + K + +++ L + G + R LTG Sbjct: 85 NYLRISLTERCNLRCQYCMPEEGVTLSPKERLLSTEEILHLAKLFVSEGVDKIR---LTG 141 Query: 93 GEPLLQVDV-PLIQALNK-RGF-EIAVETNG-TIE------PPQGIDWICVS 134 GEPL++ D+ +I+ L + G +IA+ TNG T+ G+D I +S Sbjct: 142 GEPLVRKDIVEIIEGLRELEGLKQIAMTTNGVTLAKRLPALKKAGLDLINIS 193 >gi|187776896|ref|ZP_02993369.1| hypothetical protein CLOSPO_00435 [Clostridium sporogenes ATCC 15579] gi|187775555|gb|EDU39357.1| hypothetical protein CLOSPO_00435 [Clostridium sporogenes ATCC 15579] Length = 300 Score = 38.9 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 6/84 (7%) Query: 43 LSAQCRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 +C FC T+F + G ++ I + + E+ G +GGEP+L Sbjct: 80 DEGKCNFCGKCTNFCPNNAREYVGKDLTSQEIIKEIIKDEVFYEESGGGVTFSGGEPMLH 139 Query: 99 VDVP--LIQALNKRGFEIAVETNG 120 D +++ N RG ++T+G Sbjct: 140 ADFINGILEECNVRGIHTTIDTSG 163 >gi|71003083|ref|XP_756222.1| hypothetical protein UM00075.1 [Ustilago maydis 521] gi|46096227|gb|EAK81460.1| hypothetical protein UM00075.1 [Ustilago maydis 521] Length = 1048 Score = 38.9 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 33/101 (32%) Query: 32 CNLWSGREQDRLSAQCRFC---D----TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 CNL +C +C D T + T V +LA L Q + + Sbjct: 259 CNL-----------RCLYCMPEDGVPLTPHANLLSTS----EVQRLATLFVSQGVNKIR- 302 Query: 85 GRYCVLTGGEPLLQVDVPLI----QALNKRGFE-IAVETNG 120 LTGGEP ++ D+P I L + G E I + TNG Sbjct: 303 -----LTGGEPTIRSDLPQIVTSLNTLKQHGLEQIGITTNG 338 >gi|170748996|ref|YP_001755256.1| molybdenum cofactor biosynthesis protein A [Methylobacterium radiotolerans JCM 2831] gi|170655518|gb|ACB24573.1| molybdenum cofactor biosynthesis protein A [Methylobacterium radiotolerans JCM 2831] Length = 340 Score = 38.9 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 24/166 (14%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C + Q T R ++ L +L E+ R LTGGEPL++ D Sbjct: 30 DRCDLRCTYC----MSEQMTFLPRRDLLTLEELDRLCSAFVERGVRRIRLTGGEPLVRRD 85 Query: 101 -VPLIQAL---NKRGF--EIAVETNGTIEPPQGIDWI------------CVSPKAGCDLK 142 + L+++L G E+ + TNGT+ + D + P Sbjct: 86 VIRLLESLSRHLDTGTLDELTLTTNGTMLAHRARDLAACGVRRINVSLDTLDPDR-YRAV 144 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 + G L +V ++ + + +L+ ++ LE+ A Sbjct: 145 TRRGD-LSVVLDGLDAAQAAGLAVKLNVVALRDVNEDELEDLVRFA 189 >gi|182420408|ref|ZP_02951630.1| molybdenum cofactor biosynthesis protein A [Clostridium butyricum 5521] gi|237669106|ref|ZP_04529090.1| molybdenum cofactor biosynthesis protein A [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375774|gb|EDT73372.1| molybdenum cofactor biosynthesis protein A [Clostridium butyricum 5521] gi|237657454|gb|EEP55010.1| molybdenum cofactor biosynthesis protein A [Clostridium butyricum E4 str. BoNT E BL5262] Length = 327 Score = 38.9 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 10/113 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C GI K ++ ++I + + +TGGEPL++ D Sbjct: 18 DRCNLRCVYC-MPENGINLVKHD--DILSYEEIIRLCRMFSKLGISKVKITGGEPLVRKD 74 Query: 101 V-PLIQALNK-RGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 V LI+ + + G E + + TNG I ID + K+G D LK Sbjct: 75 VYKLIKGIKEVEGIENVTLTTNG-ILLEGMIDDLV---KSGLDAVNISIDTLK 123 >gi|115378926|ref|ZP_01466061.1| organic radical activating enzyme family protein [Stigmatella aurantiaca DW4/3-1] gi|310822219|ref|YP_003954577.1| organic radical activating enzyme family protein [Stigmatella aurantiaca DW4/3-1] gi|115364076|gb|EAU63176.1| organic radical activating enzyme family protein [Stigmatella aurantiaca DW4/3-1] gi|309395291|gb|ADO72750.1| Organic radical activating enzyme family protein [Stigmatella aurantiaca DW4/3-1] Length = 218 Score = 38.9 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 42/134 (31%), Gaps = 36/134 (26%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + TL G G G GC S +C C + T+ G Sbjct: 10 YPV----HTL-GPGARIGIW-----LQGC-----------SIRCPGCISADTWT--TERG 46 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121 V + + I + ++GGEP Q L+ +L T+G Sbjct: 47 WTTVHAVMEAITPWLAQADG----VTISGGEPFDQPEALRALLMSLRAS-------THGD 95 Query: 122 IEPPQGIDWICVSP 135 I G W ++P Sbjct: 96 ILVYSGHSWEALAP 109 >gi|282855977|ref|ZP_06265268.1| Fe-S oxidoreductase [Pyramidobacter piscolens W5455] gi|282586196|gb|EFB91473.1| Fe-S oxidoreductase [Pyramidobacter piscolens W5455] Length = 542 Score = 38.9 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 15/85 (17%) Query: 31 GCNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRY--NVDQLADLIEEQWITGEKEG 85 GCN+ D SA C C G R ++D++ D+I + G Sbjct: 186 GCNVPWAILMDPTSACNLHCTGC------WAAEYGNRLNLSLDEIDDIIRQGKELGVSMY 239 Query: 86 RYCVLTGGEPLLQVDVPLIQALNKR 110 + TGGEPL++ D LI+ + Sbjct: 240 ---IYTGGEPLMRKDD-LIRICERH 260 >gi|229109614|ref|ZP_04239203.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock1-15] gi|228673862|gb|EEL29117.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock1-15] Length = 333 Score = 38.9 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + +Q D++ L G + R LTG Sbjct: 18 DRCNFRCTYCMPAEVFGPD--YAFLQEEL--LLTFDEIERLARLFISMGVNKIR---LTG 70 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 GEPLL+ +P LI L G + I + TNG Sbjct: 71 GEPLLRKHLPTLIARLANLEGLQDIGLTTNG 101 >gi|161614797|ref|YP_001588763.1| hypothetical protein SPAB_02549 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161364161|gb|ABX67929.1| hypothetical protein SPAB_02549 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 215 Score = 38.9 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 25/160 (15%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101 +C +C DT G V+ L + G +GGE +LQ + Sbjct: 2 RCLYCHNRDT----WDTHGGKEITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFV 57 Query: 102 -PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNV 158 +A K G ++TNG ID + V+ DLK E+ Q V Sbjct: 58 RDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDLKQMN-DEI----HQNLV 112 Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198 N+ +F ++ ++N + I Y P W Sbjct: 113 GVSNHRTLEFAQY--------LSKKNVKVWIRYVVV-PGW 143 >gi|94986648|ref|YP_594581.1| Fe-S oxidoreductases [Lawsonia intracellularis PHE/MN1-00] gi|94730897|emb|CAJ54260.1| predicted Fe-S oxidoreductases [Lawsonia intracellularis PHE/MN1-00] Length = 394 Score = 38.9 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 9/93 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVG--IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 + R + +C C + + + +Q LI++ +L Sbjct: 40 PVVVWNTTRRCNLKCVHC---YATALDEEKGADPMSTEQGKALIDDL---AAYGAPVLLL 93 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 +GGEPL++ D+ L +G + TNGT+ Sbjct: 94 SGGEPLVRNDLVELAAYATSQGMRAVISTNGTL 126 >gi|321478555|gb|EFX89512.1| hypothetical protein DAPPUDRAFT_310642 [Daphnia pulex] Length = 618 Score = 38.9 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 8/92 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 N +R + +C++C G+ TK ++ + G + R LT Sbjct: 57 NYLRISLTERCNLRCQYC-MPAGGVDLTTKDKLLTTSEIIKIASAFVEEGVDKIR---LT 112 Query: 92 GGEPLLQVDV-PLIQALNKRG--FEIAVETNG 120 GGEP ++ D+ L+ L K +A+ TNG Sbjct: 113 GGEPSIRPDIVELVGTLKKLDGLKTLAMTTNG 144 >gi|268678801|ref|YP_003303232.1| molybdenum cofactor biosynthesis protein A [Sulfurospirillum deleyianum DSM 6946] gi|268616832|gb|ACZ11197.1| molybdenum cofactor biosynthesis protein A [Sulfurospirillum deleyianum DSM 6946] Length = 322 Score = 38.9 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 20/168 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 +R + +C++C + + N+ DL + ++ +TGGEPLL+ D Sbjct: 19 ERCNFRCQYC---MPEKPFSWVPKENLLSFEDLFLFVKVAIDEGISKIRITGGEPLLRTD 75 Query: 101 VP-LIQAL--NKRGFEIAVETNGTI-------EPPQGIDWICV---SPKAGCDLKIKGGQ 147 + I + +K G ++A+ TNG + G+ + V S KA K+ Sbjct: 76 LDKFIAMINHHKSGLDLALTTNGFLLKGAAQKLKDAGLKRVNVSLDSLKADVAAKMAQKD 135 Query: 148 ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 L V Q + +G + ++ P+ G +E + + Y Sbjct: 136 VLTRV--QEGIEEALRVGLKV-KINMVPIQGINADEVLD-VLEYAKAR 179 >gi|330828770|ref|YP_004391722.1| Tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein [Aeromonas veronii B565] gi|328803906|gb|AEB49105.1| Tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein [Aeromonas veronii B565] Length = 294 Score = 38.9 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 11/85 (12%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D+ + +C +C + + + + L ++ E G + +C GGEP + Sbjct: 6 DKCNLKCVYC---YNEFSEKRQKDIDHNSLMRILLEAKKIGVFDINFC---GGEPF--SN 57 Query: 101 VPLIQALN---KRGFEIAVETNGTI 122 + L + GF++ + TNGT+ Sbjct: 58 RNFMSYLELAVELGFDVTINTNGTL 82 >gi|257064532|ref|YP_003144204.1| predicted Fe-S oxidoreductase [Slackia heliotrinireducens DSM 20476] gi|256792185|gb|ACV22855.1| predicted Fe-S oxidoreductase [Slackia heliotrinireducens DSM 20476] Length = 384 Score = 38.9 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 4/79 (5%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQ 98 D +C+ C F G + + R + +Q+ + E + Y ++GG+P+L Sbjct: 14 DDCDQRCKHCYI-FSGDENEELNRMSFEQMQQTLSNIEDFCETFGREPYLYISGGDPILH 72 Query: 99 VDV-PLIQALNKRGFEIAV 116 D L+ L +G + Sbjct: 73 PDFWNLMDLLKSKGIRFTI 91 >gi|15673795|ref|NP_267970.1| pyruvate-formate lyase activating enzyme [Lactococcus lactis subsp. lactis Il1403] gi|281492407|ref|YP_003354387.1| pyruvate formate-lyase activating enzyme [Lactococcus lactis subsp. lactis KF147] gi|12724840|gb|AAK05911.1|AE006411_6 pyruvate-formate lyase activating enzyme [Lactococcus lactis subsp. lactis Il1403] gi|281376071|gb|ADA65562.1| Pyruvate formate-lyase activating enzyme [Lactococcus lactis subsp. lactis KF147] gi|326407302|gb|ADZ64373.1| pyruvate formate lyase activating enzyme [Lactococcus lactis subsp. lactis CV56] Length = 264 Score = 38.9 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 36/123 (29%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +C++C DT Sbjct: 19 TESFGSVDGPG---------VRFIIFMQGC-----------RMRCKYCHNPDT-----WA 53 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIA 115 K + + D+++E G ++GGE LLQ+D + L + G Sbjct: 54 LKSDKATERTVEDVMDEALRFRGFWGEKGGITVSGGEALLQIDFVLALFKYAKSLGIHTT 113 Query: 116 VET 118 ++T Sbjct: 114 LDT 116 >gi|319939608|ref|ZP_08013967.1| pyruvate-formate lyase-activating enzyme [Streptococcus anginosus 1_2_62CV] gi|319811197|gb|EFW07503.1| pyruvate-formate lyase-activating enzyme [Streptococcus anginosus 1_2_62CV] Length = 265 Score = 38.5 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 21/99 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC +C++C DT + R D L + + + G Sbjct: 33 VF--LQGC-----------KMRCQYCHNPDT-WAMETNNSRERTVEDVLQEALRYRGFWG 78 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 +K G ++GGE LLQ++ L + G ++T Sbjct: 79 KKGG--ITVSGGEALLQINFVTALFTKAKELGIHCTLDT 115 >gi|299531597|ref|ZP_07045002.1| molybdenum cofactor biosynthesis protein A [Comamonas testosteroni S44] gi|298720313|gb|EFI61265.1| molybdenum cofactor biosynthesis protein A [Comamonas testosteroni S44] Length = 380 Score = 38.5 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 54/153 (35%), Gaps = 25/153 (16%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D ++ + + ++ ++ + R LTGGE Sbjct: 48 DRCNFRCNYCMPKEVFDKNYQYLPHS-----SLLSFEEITRLARLFVAHGVRKLRLTGGE 102 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ ++ LI L + + ++ + TN ++ G++ + VS D Sbjct: 103 PLLRKNIEALIAQLAELRTPDGQPLDLTLTTNASLLARKARALKEAGLNRVTVSLDGLDD 162 Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173 + ++ V E + Sbjct: 163 TVFRRMNDVDFPVTDVLAGIEAAQTAGLSHIKV 195 >gi|302527773|ref|ZP_07280115.1| coenzyme PQQ biosynthesis protein E [Streptomyces sp. AA4] gi|302436668|gb|EFL08484.1| coenzyme PQQ biosynthesis protein E [Streptomyces sp. AA4] Length = 357 Score = 38.5 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 6/80 (7%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R C +C + ++ + + D + + G + L+GGEPL ++D+ Sbjct: 16 RCPLHCPYCSNPLELV--SRAAEMSTVEWTDALSQARELGVLQVH---LSGGEPLARLDL 70 Query: 102 P-LIQALNKRGFEIAVETNG 120 P L+ + G + + T+G Sbjct: 71 PQLVTHASGLGCYVNLVTSG 90 >gi|261414650|ref|YP_003248333.1| Radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371106|gb|ACX73851.1| Radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 300 Score = 38.5 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 19/98 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC--- 88 CN R D +C F G N + +E+ + G+ Sbjct: 35 CN--GERPPDNNRGRCAF-----------GMGEMNFEIARAAVEKYAAERDASGKRLLRE 81 Query: 89 VL--TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 V+ T GEPLL L++ G + + TNGT Sbjct: 82 VIPSTMGEPLLYSHFDELLELCRALGIPLNLTTNGTFP 119 >gi|254784467|ref|YP_003071895.1| oxygen-independent coproporphyrinogen III oxidase [Teredinibacter turnerae T7901] gi|237687347|gb|ACR14611.1| putative oxygen-independent coproporphyrinogen III oxidase [Teredinibacter turnerae T7901] Length = 388 Score = 38.5 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 10/108 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLT 91 L +C +CD + ++ +D LAD ++ +++ R Sbjct: 11 PLSLYVHIPWCVRKCPYCDFNSHSVRSELPVDAYIDALLADCSADRHFAQQRKIRSVFFG 70 Query: 92 GGEPLLQVDVP---LIQALNK-----RGFEIAVETN-GTIEPPQGIDW 130 GG P L L+ L + R EI +ETN GT E D+ Sbjct: 71 GGTPSLLPGKAIARLLDGLRERLDFTRDCEITLETNPGTAEYSNFADY 118 >gi|91794038|ref|YP_563689.1| putative oxygen-independent coproporphyrinogen III oxidase [Shewanella denitrificans OS217] gi|91716040|gb|ABE55966.1| coproporphyrinogen III oxidase, anaerobic [Shewanella denitrificans OS217] Length = 400 Score = 38.5 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 10/101 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLT 91 L +C +CD + G G + VD LADL ++ ++ + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHGQHGELPQQAYVDALLADLAQDMDYVQGRQLHTIFIG 65 Query: 92 GGEPLL----QVDVPLI--QALN--KRGFEIAVETN-GTIE 123 GG P L Q++ L+ QAL +R EI +E N GT+E Sbjct: 66 GGTPSLFDAKQIERLLLGVQALIPFERDIEITMEANPGTLE 106 >gi|39998236|ref|NP_954187.1| molybdenum cofactor biosynthesis protein A [Geobacter sulfurreducens PCA] gi|59798352|sp|Q747W9|MOAA_GEOSL RecName: Full=Molybdenum cofactor biosynthesis protein A gi|39985182|gb|AAR36537.1| molybdenum cofactor biosynthesis protein A, putative [Geobacter sulfurreducens PCA] gi|298507174|gb|ADI85897.1| pyranopterin triphosphate synthase [Geobacter sulfurreducens KN400] Length = 326 Score = 38.5 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 6/100 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +C +C + G + + L + G ++ R +TG Sbjct: 12 NYLRLSVTDRCNLRCSYCMPAEGVEKLAHGDILSYEDLFRIARAAVAIGIEKIR---ITG 68 Query: 93 GEPLLQVDV-PLIQALNK-RGFE-IAVETNGTIEPPQGID 129 GEPL++ + P + + G + + TNG + P D Sbjct: 69 GEPLVRKGIVPFLARIAAIEGLRQLVLTTNGLLLPEMAAD 108 >gi|317484198|ref|ZP_07943127.1| glycyl-radical enzyme activating family protein [Bilophila wadsworthia 3_1_6] gi|316924547|gb|EFV45704.1| glycyl-radical enzyme activating family protein [Bilophila wadsworthia 3_1_6] Length = 301 Score = 38.5 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 G + + + I++ G L+GGE L Q + L+ A + G +A+ET+ Sbjct: 102 GVERDTADVLEDIKKDMAFYRNSGGGVTLSGGEVLAQAAFALDLMAACKRYGIHLALETS 161 Query: 120 G 120 G Sbjct: 162 G 162 >gi|311695843|gb|ADP98716.1| molybdenum cofactor biosynthesis protein A [marine bacterium HP15] Length = 330 Score = 38.5 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 6/91 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR +C +C + T R V L ++ + LTG Sbjct: 15 NYVRLSVTDRCDFRCVYC----MAEDMTFLPRQQVLTLEEIARVARSFVDLGTEKIRLTG 70 Query: 93 GEPLLQVD-VPLIQALNKRGFE-IAVETNGT 121 GEP+++ D + L++ + G A+ TNG+ Sbjct: 71 GEPMVRKDILELVKEIGTYGLRDFAMTTNGS 101 >gi|116750480|ref|YP_847167.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116699544|gb|ABK18732.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB] Length = 377 Score = 38.5 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 25/112 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR + D+ L+++ +LT Sbjct: 38 CNLAC--------VHCR-----AAALDRPYENELKTDECFRLLDDIGTVA---SPIIILT 81 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ--------GIDWICVS 134 GGEPLL+ D+ + N +GF + + NGT+ P+ GI I VS Sbjct: 82 GGEPLLRPDIFEIAAYGNAKGFRMTMAVNGTLLTPETAKRMIETGIQRISVS 133 >gi|294635581|ref|ZP_06714058.1| radical SAM protein [Edwardsiella tarda ATCC 23685] gi|291091033|gb|EFE23594.1| radical SAM protein [Edwardsiella tarda ATCC 23685] Length = 384 Score = 38.5 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 40/118 (33%), Gaps = 35/118 (29%) Query: 24 AVFCRFSG-CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY--------NVDQLADLI 74 F R S CNL C +C +V K RY ++ L + + Sbjct: 14 TFFVRISSDCNL-----------NCEYC---YVFNHIDKTSRYLPNLMSFDTINLLIERL 59 Query: 75 EEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN----------KRGFEIAVETNGTI 122 ++ + V GGEPLL + L K GF + TNG++ Sbjct: 60 KDYQYKYNLDEILIVFHGGEPLLMGPKRFTEVLKLISSGLSDIVKLGFSVQ--TNGSL 115 >gi|254166605|ref|ZP_04873459.1| radical SAM domain protein [Aciduliprofundum boonei T469] gi|289596367|ref|YP_003483063.1| Radical SAM domain protein [Aciduliprofundum boonei T469] gi|197624215|gb|EDY36776.1| radical SAM domain protein [Aciduliprofundum boonei T469] gi|289534154|gb|ADD08501.1| Radical SAM domain protein [Aciduliprofundum boonei T469] Length = 496 Score = 38.5 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 29/134 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDF-VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL T + + T +Y Q+ D ++E + Sbjct: 126 CNLKCKHCYANA--------TPYPARDELTLEQKY---QVVDQLDEAGVAA------ISF 168 Query: 91 TGGEPLLQVDVPLIQA-LNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 +GGEPL D + +GF + V TNGT+ +S K LK G + Sbjct: 169 SGGEPLTNKDFLKVARYAKSKGFYLTVATNGTL----------ISEKMARKLKEVGIGYV 218 Query: 150 KLVFPQVNVSPENY 163 ++ N + Sbjct: 219 EISLDGPNAEIHDE 232 >gi|145592010|ref|YP_001154012.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM 13514] gi|145283778|gb|ABP51360.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 578 Score = 38.5 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 8/91 (8%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 L +R + C C F ++Q+ ++ ++G Sbjct: 153 LAIIDVTNRCNMACPVC---FANAGAAGYVYEPTLEQIEYMLRTLRAQKPWPPNAIQISG 209 Query: 93 GEPLLQVDVPLIQAL-NKRGFEIAVE--TNG 120 GEP L+ D+P I + K GF +E TNG Sbjct: 210 GEPTLRDDLPEIVRMAKKLGFT-HIEINTNG 239 >gi|134300798|ref|YP_001114294.1| glycyl-radical activating family protein [Desulfotomaculum reducens MI-1] gi|134053498|gb|ABO51469.1| glycyl-radical enzyme activating protein family [Desulfotomaculum reducens MI-1] Length = 297 Score = 38.5 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 8/91 (8%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119 G R V+++ IE I E+ G +GGEPL+Q L+ A R AV+T Sbjct: 99 GRRVAVEEVVREIERDRIFYEESGGGVTFSGGEPLVQPSFLHSLLDACQDREIATAVDTT 158 Query: 120 G------TIEPPQGIDWICVSPKAGCDLKIK 144 G + + +D K D K K Sbjct: 159 GYTAEETLLSISEKVDLFLYDIKLMDDEKHK 189 >gi|303244975|ref|ZP_07331299.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1] gi|302484686|gb|EFL47626.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1] Length = 109 Score = 38.5 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 18/91 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C G +L +++ G K+ ++ Sbjct: 20 CNL-----------KCFYC--HREGHDSENINLMTPSELGKIVKTSLKFGIKK---VKIS 63 Query: 92 GGEPLLQVDVP-LIQALNKRGFE-IAVETNG 120 GGEPLL+ D+P +I++++ + I++ TNG Sbjct: 64 GGEPLLRNDLPQIIESISDDNLKDISLTTNG 94 >gi|110679938|ref|YP_682945.1| radical SAM domain-containing protein [Roseobacter denitrificans OCh 114] gi|109456054|gb|ABG32259.1| radical SAM domain protein [Roseobacter denitrificans OCh 114] Length = 315 Score = 38.5 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 8/89 (8%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCVLT 91 LW + +C C ++ T D++ +++ R T Sbjct: 35 LWFNT-GTLCNIECVNC---YIESSPTNDALVYITADEVRSYLDQLETRAW-PVREIAFT 89 Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETN 119 GGEP + + L +A +RG+E+ V TN Sbjct: 90 GGEPFMNPQMIDLARAALERGYEVLVLTN 118 >gi|91774057|ref|YP_566749.1| ribonucleoside-triphosphate reductase, anaerobic-like protein [Methanococcoides burtonii DSM 6242] gi|91713072|gb|ABE52999.1| Radical SAM protein [Methanococcoides burtonii DSM 6242] Length = 261 Score = 38.5 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 24/104 (23%) Query: 21 GRVAV--FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G+ +V F R GC +C +C T +V +L I+ Sbjct: 18 GKASVVLFLR--GCPF-----------RCPYC---HNYEILTVPDMVDVKELEKKIDSSS 61 Query: 79 ITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 + GGEPL Q + + L K+ + + TNG Sbjct: 62 LFVSSVVFS----GGEPLAQKNALIHLASYAKKKDLLVGIHTNG 101 >gi|308172658|ref|YP_003919363.1| hypothetical protein BAMF_0767 [Bacillus amyloliquefaciens DSM 7] gi|307605522|emb|CBI41893.1| hypothetical protein yfkA1 [Bacillus amyloliquefaciens DSM 7] Length = 177 Score = 38.5 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L +EE + R +TGGEP+L + Sbjct: 45 RCEHCAVGYT-LQPKDPNALPIDLLLKRLEEIPLL-----RSISITGGEPMLSLKSVKEY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 VPL++ ++RG + +N T++ Sbjct: 99 VVPLLKYAHERGVRTQINSNLTLDI 123 >gi|194466736|ref|ZP_03072723.1| molybdenum cofactor biosynthesis protein A [Lactobacillus reuteri 100-23] gi|194453772|gb|EDX42669.1| molybdenum cofactor biosynthesis protein A [Lactobacillus reuteri 100-23] Length = 332 Score = 38.5 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C G+ + + D++ L++ G + R LTGGEPLL+ Sbjct: 21 DRCNLRCVYC-MPAAGLDFFSQDKIMSQDEIVRLVQNFARLGVTKVR---LTGGEPLLRR 76 Query: 100 DVP 102 D+ Sbjct: 77 DLA 79 >gi|71278987|ref|YP_271280.1| molybdenum cofactor biosynthesis protein A [Colwellia psychrerythraea 34H] gi|71144727|gb|AAZ25200.1| molybdenum cofactor biosynthesis protein A [Colwellia psychrerythraea 34H] Length = 323 Score = 38.5 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 27/134 (20%) Query: 47 CRFC--DTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103 C +C D G Q + + ++ ++ + + G ++ R +TGGEP L+ D+P Sbjct: 25 CTYCLPD----GYQCDQPRDFLSLCEIKRIAKAFAELGTEKIR---ITGGEPALRKDLPE 77 Query: 104 IQALNK--RGF-EIAVETNGT-------IEPPQGIDWICVS-----PKAGCDLKIKGGQE 148 I + K G ++A+ +NG GID I +S P+ I G + Sbjct: 78 IIRICKETAGIKKVAITSNGFKLPDHLPHWLDAGIDAINISIDSLDPRQFH--AITGHDK 135 Query: 149 LKLVFPQVNVSPEN 162 LK + ++++ + Sbjct: 136 LKTILTGIDMALAD 149 >gi|255321817|ref|ZP_05362967.1| molybdenum cofactor biosynthesis protein A [Campylobacter showae RM3277] gi|255300921|gb|EET80188.1| molybdenum cofactor biosynthesis protein A [Campylobacter showae RM3277] Length = 322 Score = 38.5 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 10/84 (11%) Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 R + +C++C T F R N+ +L + ++ + +TGGEPLL+ Sbjct: 20 RCNFRCKYCMPKTPFSWE-----PRENLLSFEELFLFVKVCLDEGVKKIRITGGEPLLRK 74 Query: 100 DVP-LIQAL--NKRGFEIAVETNG 120 D+ I + + ++A+ TNG Sbjct: 75 DLDKFIAMINEHSPDVDLAITTNG 98 >gi|171909592|ref|ZP_02925062.1| Fe-S protein, radical SAM family [Verrucomicrobium spinosum DSM 4136] Length = 342 Score = 38.5 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 8/92 (8%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL--ADLIEEQWITGEKEGRYCVLT 91 +W E R + +C FC + G + ++ + W Sbjct: 15 VWRVTE--RCNLRCPFC--AYDARLERPRGVADPAEIRRFAAVLADWSQATGRPVLLSWL 70 Query: 92 GGEPLLQVDVPLIQALN--KRGFEIAVETNGT 121 GGEPLL + + ++ TNGT Sbjct: 71 GGEPLLWKPLEALTRHCRDDLNLRLSTTTNGT 102 >gi|160901672|ref|YP_001567253.1| radical SAM domain-containing protein [Petrotoga mobilis SJ95] gi|160359316|gb|ABX30930.1| Radical SAM domain protein [Petrotoga mobilis SJ95] Length = 481 Score = 38.5 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 21/92 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C + + G K + +++ D+I + G ++T Sbjct: 121 CNL-----------RCVGC---YAAMYGHKY-MLSKEEIFDVIRQFNDLGIYFF---IIT 162 Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122 GGEP + +++ + F + TNGT+ Sbjct: 163 GGEPFVYPYLFDVLEEFSDSYFLLY--TNGTL 192 >gi|86143254|ref|ZP_01061656.1| molybdenum cofactor biosynthesis protein A [Leeuwenhoekiella blandensis MED217] gi|85830159|gb|EAQ48619.1| molybdenum cofactor biosynthesis protein A [Leeuwenhoekiella blandensis MED217] Length = 335 Score = 38.5 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 6/89 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 N ++ + +C +C GI + + +++ + G + R LT Sbjct: 17 NYLRISLSEKCNLRCTYC-MPHDGIPLSPRANLMSAEEIEAFAKVFVENGVDKIR---LT 72 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETN 119 GGEPL++ D +++ L K ++++ TN Sbjct: 73 GGEPLVRKDFSDILKRLAKLPVKLSITTN 101 >gi|310644063|ref|YP_003948821.1| radical sam domain protein [Paenibacillus polymyxa SC2] gi|309249013|gb|ADO58580.1| Radical SAM domain protein [Paenibacillus polymyxa SC2] Length = 351 Score = 38.5 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 28/112 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR---YC 88 CNL +C++C +V R + D E++ + + Sbjct: 11 CNL-----------KCKYC---YVSKVPKMMSRETAAKAIDFTEKKLAANPLDPKDKIRI 56 Query: 89 VLTGGEPLLQ--VDVPLIQALNKRGFEIAVE------TNGTIEPPQGIDWIC 132 L GGEPLL + L++ L ++ I E TNGTI + +D++ Sbjct: 57 ALHGGEPLLNYPIIRYLVEELKQK---IHGEVSFRMTTNGTIYNQEILDYVS 105 >gi|310658965|ref|YP_003936686.1| molybdopterin biosynthesis protein a [Clostridium sticklandii DSM 519] gi|308825743|emb|CBH21781.1| molybdopterin biosynthesis protein A [Clostridium sticklandii] Length = 316 Score = 38.5 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 21/146 (14%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D + C +C + K ++ ++ ++ + + LTGGEPL++ Sbjct: 18 DLCNFNCEYC----MPEGIEKKDHSDILRIEEIENICKVAARNGIKKIRLTGGEPLVRKG 73 Query: 101 -VPLIQALN--KRGFEIAVETNGTIEPP-------QGIDWICV---SPKAGCDLKIKGGQ 147 + LI + E+A+ TNG + G+D I + S KI G Sbjct: 74 ILSLINKIKSIDEITEVAITTNGVLLDEMAKDLKAAGLDRINLSLDSMDENVFRKITRGH 133 Query: 148 ELKLVFPQVNVSPENYIGFDFERFSL 173 EL V+ + E+ + FE + Sbjct: 134 ELSEVYKGL----ESALDAGFENIKI 155 >gi|261403573|ref|YP_003247797.1| Wyosine base formation domain protein [Methanocaldococcus vulcanius M7] gi|261370566|gb|ACX73315.1| Wyosine base formation domain protein [Methanocaldococcus vulcanius M7] Length = 315 Score = 38.5 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Query: 70 LADLIEEQWITGEKEGRYCVLT-GGEPLLQV-DVPLIQALNKRGFEIAVETNGTI-EPPQ 126 + D + E+ ++ ++ GEP L LIQ +K+GF V +NG + E + Sbjct: 115 VLDRVGEKKFEEALNPKHVAISLSGEPTLYPYLDELIQIFHKKGFTTFVVSNGILTEIIE 174 Query: 127 GID 129 ID Sbjct: 175 KID 177 >gi|120555983|ref|YP_960334.1| molybdenum cofactor biosynthesis protein A [Marinobacter aquaeolei VT8] gi|166217881|sp|A1U578|MOAA_MARAV RecName: Full=Molybdenum cofactor biosynthesis protein A gi|120325832|gb|ABM20147.1| GTP cyclohydrolase subunit MoaA [Marinobacter aquaeolei VT8] Length = 330 Score = 38.5 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 12/97 (12%) Query: 33 NLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 N DR +C +C D F+ Q ++++A L G ++ R Sbjct: 15 NYVRLSVTDRCDFRCVYCMAEDMTFLPRQ----QVLTLEEIARLARNFVALGTEKIR--- 67 Query: 90 LTGGEPLLQVD-VPLIQALNKRGFE-IAVETNGTIEP 124 LTGGEPL++ D + L++ + G A+ TNG+ P Sbjct: 68 LTGGEPLVRRDILELVREVGTYGLRDFAMTTNGSQLP 104 >gi|317133405|ref|YP_004092719.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Ethanoligenens harbinense YUAN-3] gi|315471384|gb|ADU27988.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Ethanoligenens harbinense YUAN-3] Length = 173 Score = 38.5 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 26/94 (27%), Gaps = 23/94 (24%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82 RF GC C C G +++ + E + Sbjct: 21 IRFVVFAQGCP-----------HHCAGCQNAQTW-PFAGGHETPPEKVLAAMRENPLLAG 68 Query: 83 KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEI 114 L+GGEP Q D L + G+ + Sbjct: 69 -----LTLSGGEPFCQCDAMEELAEQAKDAGYSV 97 >gi|146304068|ref|YP_001191384.1| radical SAM domain-containing protein [Metallosphaera sedula DSM 5348] gi|145702318|gb|ABP95460.1| Radical SAM domain protein [Metallosphaera sedula DSM 5348] Length = 321 Score = 38.5 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 25/93 (26%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C FC + + G G +QL +I+ VL Sbjct: 34 CNL-----------RCTFCNPSYYSGTLQEVG----TEQLKKIIDNL------RSTVVVL 72 Query: 91 T--GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 + GGEP + D + L++ + F + + TNG Sbjct: 73 SFEGGEPTTRPDILELLEYAHDGSFYVMLTTNG 105 >gi|116749801|ref|YP_846488.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116698865|gb|ABK18053.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB] Length = 377 Score = 38.5 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 14/92 (15%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL T+ +++L L++E ++ +LT Sbjct: 37 CNLNCVHCYISEPFH----------SGKTRAREMGLNRLLSLLDE---VADRGCLDLLLT 83 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GGE L++ D P L ++GF + V TNGT+ Sbjct: 84 GGEVLIRRDFPQLYAYAVRKGFRVTVFTNGTL 115 >gi|302540150|ref|ZP_07292492.1| coenzyme PQQ biosynthesis protein E [Streptomyces hygroscopicus ATCC 53653] gi|302457768|gb|EFL20861.1| coenzyme PQQ biosynthesis protein E [Streptomyces himastatinicus ATCC 53653] Length = 371 Score = 38.5 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 17/91 (18%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GC L C +C + + ++ ++ + G L Sbjct: 24 GCPL-----------HCPYCSNPLQLTR--RSRELTGEEWERVLRQAAELGVVHTH---L 67 Query: 91 TGGEPLLQVDVPLI-QALNKRGFEIAVETNG 120 +GGEPLL+ D+ +I A G + T+G Sbjct: 68 SGGEPLLRRDLEVIVAAAASAGLYTQLVTSG 98 >gi|296242925|ref|YP_003650412.1| radical SAM domain-containing protein [Thermosphaera aggregans DSM 11486] gi|296095509|gb|ADG91460.1| Radical SAM domain protein [Thermosphaera aggregans DSM 11486] Length = 380 Score = 38.5 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 46/138 (33%), Gaps = 31/138 (22%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 AVF F+GCNL Q+ V G K + +D L + G+ Sbjct: 142 AVF--FAGCNLDCLFCQNWEHK-------KMVAGPGWKRYVFTIDGLL----RAGLDGKV 188 Query: 84 EGRYCVLTGGEPLLQVDVPL---IQALNKRG-----FEIAVETNGTIEPPQGIDWICVSP 135 GG+P L + L + G + ETNG + P Sbjct: 189 TC--VCFFGGDPGPHTVFALNFSRRLLKEAGERGVVKRVCWETNGLVNPAL--------F 238 Query: 136 KAGCDLKIKGGQELKLVF 153 K L ++ G +K+ + Sbjct: 239 KEMVRLSLESGGIVKVDW 256 >gi|294786900|ref|ZP_06752154.1| putative radical SAM domain protein [Parascardovia denticolens F0305] gi|315226535|ref|ZP_07868323.1| conserved hypothetical protein [Parascardovia denticolens DSM 10105] gi|294485733|gb|EFG33367.1| putative radical SAM domain protein [Parascardovia denticolens F0305] gi|315120667|gb|EFT83799.1| conserved hypothetical protein [Parascardovia denticolens DSM 10105] Length = 384 Score = 38.5 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 34/136 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNV--------DQLADLIEEQWITGE 82 CNL C +C ++ KG + + ++A+ I + Sbjct: 66 CNLT-----------CSYCYQKHESLKEQKGIWKLTIHKKDICDKREIANFIFAEMNRAR 114 Query: 83 KEGRYCVLTGGEPLLQVDV--PLIQALNK--RGFEIAVETNGTIEPPQGIDWICVSPKAG 138 + L GGEPL+ +D ++ L + ++V TNGT+ +SP + Sbjct: 115 MKQIDLSLLGGEPLMYLDDIGDFVKELRALIQIRSVSVITNGTL----------ISPNSL 164 Query: 139 CDLKIKGGQELKLVFP 154 L G E+++ F Sbjct: 165 QILDKIGCNEVQITFD 180 >gi|285017588|ref|YP_003375299.1| coproporphyrinogen III oxidase [Xanthomonas albilineans GPE PC73] gi|283472806|emb|CBA15311.1| putative coproporphyrinogen III oxidase protein [Xanthomonas albilineans] Length = 381 Score = 38.5 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 10/99 (10%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91 L +C +CD + +G VD L +++ + V Sbjct: 4 PLSLYVHLPWCVRKCPYCDFNSHAAKGALPFDAYVDALIRDLDQDLPLVWGRVVHSVFFG 63 Query: 92 GGEPLLQVDVPLIQALNKR--------GFEIAVETN-GT 121 GG P L + + L G EI +ETN GT Sbjct: 64 GGTPSLFPPEAIARFLEAASARLRFAPGLEITLETNPGT 102 >gi|225020332|ref|ZP_03709524.1| hypothetical protein CORMATOL_00339 [Corynebacterium matruchotii ATCC 33806] gi|224946721|gb|EEG27930.1| hypothetical protein CORMATOL_00339 [Corynebacterium matruchotii ATCC 33806] Length = 225 Score = 38.5 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 21/99 (21%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F GC L +C +C +Q G ++ + L ++ + Sbjct: 41 TIF--TQGCPL-----------RCVYC--HNPSLQAFGAGSHDFAEALALAVDRRSLIDG 85 Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNK-RGFEIAVETNG 120 V++GGEP + I A+++ G + + T G Sbjct: 86 ----VVISGGEPTAVPGLADAIAAVHETTGLPVGLHTCG 120 >gi|254468679|ref|ZP_05082085.1| molybdenum cofactor biosynthesis protein A [beta proteobacterium KB13] gi|207087489|gb|EDZ64772.1| molybdenum cofactor biosynthesis protein A [beta proteobacterium KB13] Length = 323 Score = 38.5 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 7/92 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR +C++C + ++ + + ++ I LTG Sbjct: 11 NYLRLSVTDRCDFRCQYC----MSEDIEFMPKHQMLTIEEMNRLANIFINLGVEKIRLTG 66 Query: 93 GEPLLQVDV-PLIQALNKRG--FEIAVETNGT 121 GEPL++ V LI L++ E+ + TNG+ Sbjct: 67 GEPLVRRGVNELIDKLSQNKKLKELTLTTNGS 98 >gi|197284599|ref|YP_002150471.1| pyruvate formate lyase-activating enzyme 1 [Proteus mirabilis HI4320] gi|227356781|ref|ZP_03841166.1| pyruvate formate-lyase activating enzyme [Proteus mirabilis ATCC 29906] gi|194682086|emb|CAR41647.1| pyruvate formate-lyase activating enzyme [Proteus mirabilis HI4320] gi|227163071|gb|EEI48006.1| pyruvate formate-lyase activating enzyme [Proteus mirabilis ATCC 29906] Length = 246 Score = 38.5 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 33/101 (32%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G VD+L Sbjct: 25 VF--FQGC-----------LMRCLYCHNRDT----WDTHGGQIVTVDELMKEAVTYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G +GGE +LQ + +A K ++TNG Sbjct: 68 NASGGGVTASGGEAILQAEFVRDWFRACKKENIHTCLDTNG 108 >gi|209885787|ref|YP_002289644.1| hopanoid biosynthesis associated radical SAM protein HpnH [Oligotropha carboxidovorans OM5] gi|209873983|gb|ACI93779.1| hopanoid biosynthesis associated radical SAM protein HpnH [Oligotropha carboxidovorans OM5] Length = 400 Score = 38.5 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 20/115 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C R + + D EE + Sbjct: 38 CNLAC--------AGCG----KIDYPDAILNRRMSPQECWDAAEECG------APMVAIP 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 GGEPL+ ++ +++ L R +++ TN + + +D SP + + G Sbjct: 80 GGEPLIHKEIGEIVRGLVARKKFVSLCTN-AMLLEKKLDLFEPSPYLFFSVHLDG 133 >gi|124486340|ref|YP_001030956.1| protein tyrosine phosphatase [Methanocorpusculum labreanum Z] gi|124363881|gb|ABN07689.1| Radical SAM domain protein [Methanocorpusculum labreanum Z] Length = 381 Score = 38.5 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 28/98 (28%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GC +C++C R +D + D++ E + Sbjct: 14 GCP-----------GRCKYC-----WSSDETSPRMTLDTIDDIVT---WLKPLEDQRVTF 54 Query: 91 T--GGEPLL-------QVDVPLIQALNKRGFEIAVETN 119 T GGEPLL Q + + L E A++TN Sbjct: 55 TFHGGEPLLAGAEFYRQAFKKITEGLPHLSPEFAIQTN 92 >gi|126178826|ref|YP_001046791.1| radical SAM domain-containing protein [Methanoculleus marisnigri JR1] gi|125861620|gb|ABN56809.1| Radical SAM domain protein [Methanoculleus marisnigri JR1] Length = 398 Score = 38.5 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 5/95 (5%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + +R + C C ++ G GR + + + E + +G Sbjct: 39 PVVFWNITNRCNLLCSHC---YIR-AGPGRGREDELTTEEGLALIDDLAEMRVPLLLFSG 94 Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 GEPL++ D L + G A+ TNGT+ P Sbjct: 95 GEPLVREDFWELAGHAKESGLTTALSTNGTLITPA 129 >gi|219666435|ref|YP_002456870.1| glycyl-radical enzyme activating protein family [Desulfitobacterium hafniense DCB-2] gi|219536695|gb|ACL18434.1| glycyl-radical enzyme activating protein family [Desulfitobacterium hafniense DCB-2] Length = 310 Score = 38.5 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 22/153 (14%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 G V+ + +E+ + + G +GGEPL+Q D ++ +R + +ET Sbjct: 117 GKPTTVEDVLKEVEKDSVFYARSGGGLTFSGGEPLMQGDFVAETLKEARRRRLKTTIETC 176 Query: 120 GTIEPPQG-----------IDWICVSPKAGCDLKIKGG-QELKLVFPQVNVSPENYIGFD 167 G ++ +D C+ P+ K G EL + N E++ Sbjct: 177 GYVDWSTMEKVCQHLTSLIMDIKCMDPEKHQ--KYTGASNEL--ILDNFNKLCEHFPKL- 231 Query: 168 FERFSLQPMDGPF--LEENTNLAISYCFQNPKW 198 + P+ F EE+ + P Sbjct: 232 -PKLIRTPVVPGFNDREEDIREIAEFVKDKPNV 263 >gi|253701420|ref|YP_003022609.1| molybdenum cofactor biosynthesis protein A [Geobacter sp. M21] gi|251776270|gb|ACT18851.1| molybdenum cofactor biosynthesis protein A [Geobacter sp. M21] Length = 326 Score = 38.5 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 8/94 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLT 91 N DR + +C +C G++ R + ++L + + G ++ R +T Sbjct: 12 NYLRLSVTDRCNLRCSYC-MPAQGVKLLPQDRVLSYEELLRVATQAVAAGIEKIR---VT 67 Query: 92 GGEPLLQVDV-PLIQALNK-RGF-EIAVETNGTI 122 GGEPL++ + P ++ L + G E+ + TNGT+ Sbjct: 68 GGEPLVRKGIVPFLKRLARIPGLEELVLTTNGTL 101 >gi|325962827|ref|YP_004240733.1| GTP cyclohydrolase subunit MoaA [Arthrobacter phenanthrenivorans Sphe3] gi|323468914|gb|ADX72599.1| GTP cyclohydrolase subunit MoaA [Arthrobacter phenanthrenivorans Sphe3] Length = 369 Score = 38.5 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 21/107 (19%) Query: 21 GRVAVFCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEE 76 GR A R S CNL +C +C G++ K + +++ ++ Sbjct: 32 GRRATDMRLSLTDKCNL-----------RCTYC-MPAEGLEWLAKQAVMSAEEIVRIVR- 78 Query: 77 QWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRG--FEIAVETNG 120 + R LTGGEPL+ V +I AL + I++ +NG Sbjct: 79 -IGVEQLGVRELRLTGGEPLVRHDLVDIIAALRRNHPALPISMTSNG 124 >gi|317122250|ref|YP_004102253.1| GTP cyclohydrolase subunit MoaA [Thermaerobacter marianensis DSM 12885] gi|315592230|gb|ADU51526.1| GTP cyclohydrolase subunit MoaA [Thermaerobacter marianensis DSM 12885] Length = 360 Score = 38.5 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 14/91 (15%) Query: 41 DRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 DR + +C +C D ++ + D++ ++ G ++ R LTGGEPL Sbjct: 51 DRCNFRCVYCMPEGDIPWIPSE----EILTFDEIERVVRICAAMGVEKLR---LTGGEPL 103 Query: 97 LQVDV-PLIQALNK-RGFE-IAVETNGTIEP 124 L+ V L L + G +++ TNG + P Sbjct: 104 LRPGVEELTARLVRVPGIRSVSMTTNGFLLP 134 >gi|299138205|ref|ZP_07031385.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8] gi|298600135|gb|EFI56293.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8] Length = 472 Score = 38.5 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 14/103 (13%) Query: 31 GCNLWSGREQDRLSAQCR----FCD-------TDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G D C CD + G Y + + + + + Sbjct: 82 GCPYDCGLCPDHEQHSCLSLIEICDACNLSCPICYA-ESGPHRTTYRTMEQIEAMLDMVV 140 Query: 80 TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNG 120 E E ++GGEP + ++ A +R + V TNG Sbjct: 141 ANELEPDVVQISGGEPTIHPQFFEVLDAAKRRPIRHLMVNTNG 183 >gi|281357901|ref|ZP_06244386.1| glycyl-radical enzyme activating protein family [Victivallis vadensis ATCC BAA-548] gi|281315559|gb|EFA99587.1| glycyl-radical enzyme activating protein family [Victivallis vadensis ATCC BAA-548] Length = 305 Score = 38.5 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 16/124 (12%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDR----LSAQCRFCDTDFVGIQGTK- 61 EIF T G A F + C R +++ +C C Sbjct: 52 SEIFFTP---SRCVGCGACF---TVCPASCHRMENKMHLFDRKRCTQCGICAANCPAGAL 105 Query: 62 ---GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAV 116 G + +++ + + + E G ++GGEPL D L+ K V Sbjct: 106 ELCGRHLSPEEVMAEVLKDRVFYETSGGGMTVSGGEPLAHFDYLFHLLSLARKEKIHTCV 165 Query: 117 ETNG 120 ET+G Sbjct: 166 ETSG 169 >gi|222056339|ref|YP_002538701.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. FRC-32] gi|221565628|gb|ACM21600.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. FRC-32] Length = 304 Score = 38.5 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGT 121 + L I+ Q K G L+GGE LLQ L++ GF VET+G Sbjct: 114 EATPETLFATIQPQLEMVRKIGGL-TLSGGEALLQGEAVAHLLRLARDAGFHTTVETSGL 172 Query: 122 IEP 124 + Sbjct: 173 LPL 175 >gi|24211998|sp|Q93KD1|MOAA_EUBAC RecName: Full=Molybdenum cofactor biosynthesis protein A Length = 325 Score = 38.5 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 6/91 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +C +C + +++L ++ G + R +TG Sbjct: 16 NYLRISVTDRCNLRCMYCMPQEGIPKRAHHDIMTLEELQEVAVALVELGIDKIR---ITG 72 Query: 93 GEPLLQVDVP-LIQALNK-RGF-EIAVETNG 120 GEPL++ + L++ L+K G EI + TNG Sbjct: 73 GEPLVRKGIVGLVRELSKCEGLNEITLTTNG 103 >gi|328789404|ref|XP_624280.2| PREDICTED: molybdenum cofactor biosynthesis protein 1 [Apis mellifera] Length = 566 Score = 38.5 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 26/114 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C +C GI+ TK G D++ + + G + R L Sbjct: 66 CNL-----------RCLYC-MPAEGIKLTKNDGILRTDEIIKIADLFVNEGINKIR---L 110 Query: 91 TGGEPLLQVDV-PLIQALNKRG--FEIAVETNG---TIEPP----QGIDWICVS 134 TGGEP ++ D+ +I L + ++A+ TNG T + P G+D I +S Sbjct: 111 TGGEPTVRKDIVDIIAGLKQLSNLKQVAITTNGLTLTRQLPFLQKAGLDAINIS 164 >gi|329116400|ref|ZP_08245117.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus parauberis NCFD 2020] gi|326906805|gb|EGE53719.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus parauberis NCFD 2020] Length = 263 Score = 38.5 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 67/179 (37%), Gaps = 38/179 (21%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +C++C DT + Sbjct: 16 TESFGSVDGPG---------IRFIIFMQGC-----------KMRCQYCHNPDT-WEMETN 54 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117 R D L + ++ + G+ G ++GGE +LQ+D L G ++ Sbjct: 55 KSQERTVKDVLNEALQYKHFWGKNGG--ITVSGGEAMLQIDFITALFTEAKALGIHTTLD 112 Query: 118 TNG-----TIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 T G T E + +D + V+ DLK ++ K+V Q N + + + E+ Sbjct: 113 TCGFAYRATPEYHEKLDTLLAVTDLILLDLKEIDEEQHKIVTRQPNKNILLFAQYLSEK 171 >gi|192362408|ref|YP_001980845.1| molybdenum cofactor biosynthesis protein A [Cellvibrio japonicus Ueda107] gi|190688573|gb|ACE86251.1| Molybdenum cofactor biosynthesis protein A [Cellvibrio japonicus Ueda107] Length = 332 Score = 38.5 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 13/95 (13%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV--- 89 N DR +C +C + DQ+ + E + Sbjct: 12 NYVRLSITDRCDLRCVYC-------MAEEMTFLPRDQVLSIEEFARLGAILVELGVTKLR 64 Query: 90 LTGGEPLL-QVDVPLIQALNK-RGF-EIAVETNGT 121 +TGGEPL+ Q + L+Q L + G E+ + TNGT Sbjct: 65 ITGGEPLVRQGAITLMQRLGQIPGLRELCLTTNGT 99 >gi|48478268|ref|YP_023974.1| tRNA-modifying enzyme [Picrophilus torridus DSM 9790] gi|48430916|gb|AAT43781.1| Fe-S oxidoreductase [Picrophilus torridus DSM 9790] Length = 336 Score = 38.5 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 41/117 (35%), Gaps = 28/117 (23%) Query: 44 SAQCRFC------DTDFVGIQGTKG--GRYNVDQLADLIE----------EQWITGEKEG 85 + C FC D+ +G + ++ LI E W Sbjct: 78 TENCEFCWRFQGFDSMHIGDEDDPEFILEESIKAHLKLISGFKGNPNVSSEAWEKAMHPK 137 Query: 86 RY-CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE-PPQGID------WICV 133 LTG EP L + LI+A KRG + TNGT+ + +D ++ V Sbjct: 138 HMAISLTG-EPTLYTRLGELIEAATKRGISTFLVTNGTLPMVLEKLDPLPTQLYVTV 193 >gi|302544827|ref|ZP_07297169.1| PE-PGRS family protein [Streptomyces hygroscopicus ATCC 53653] gi|302462445|gb|EFL25538.1| PE-PGRS family protein [Streptomyces himastatinicus ATCC 53653] Length = 371 Score = 38.5 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 + + G TGGEP L ++P LI+ + G + + +NG Sbjct: 84 ALALAAVRGSLPTHEVHFTGGEPTLHPELPGLIRIARRLGLTVGLTSNG 132 >gi|154497199|ref|ZP_02035895.1| hypothetical protein BACCAP_01492 [Bacteroides capillosus ATCC 29799] gi|150273598|gb|EDN00726.1| hypothetical protein BACCAP_01492 [Bacteroides capillosus ATCC 29799] Length = 280 Score = 38.5 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 42/155 (27%), Gaps = 42/155 (27%) Query: 24 AVFCRFSGCNLWSGREQD-------------------------------RLSAQCRFCDT 52 AVF GCNL + +C CD Sbjct: 24 AVF--LQGCNLSCAYCHNPETQNLCTGCGLCADHCPSGALERCPDGGVVWNPERCTGCDA 81 Query: 53 DFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQAL 107 + K +++ +E + R ++GGE L + L Sbjct: 82 CIRLCPSLASPKVRTMTPEEVMGAVEHNLLF----IRGITVSGGECTLYPEFLTGLFTLA 137 Query: 108 NKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 RG ++NGT+ + V D+K Sbjct: 138 RARGLTCLADSNGTVPLAPLSGLMAVCDGVMLDVK 172 >gi|116672386|ref|YP_833319.1| radical SAM domain-containing protein [Arthrobacter sp. FB24] gi|116612495|gb|ABK05219.1| Radical SAM domain protein [Arthrobacter sp. FB24] Length = 533 Score = 38.5 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 16/91 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C F G + ++ ++ + +L+ Sbjct: 132 CNL-----------RCPTC---FTSSGPQLQGVAPLAEVLANVDARLARENGRLDVLMLS 177 Query: 92 GGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120 GGEP L + L++ L R I V +NG Sbjct: 178 GGEPTLYPHLAELLEELVARPIVRIMVNSNG 208 >gi|153938937|ref|YP_001391265.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum F str. Langeland] gi|166217247|sp|A7GEQ5|MOAA_CLOBL RecName: Full=Molybdenum cofactor biosynthesis protein A gi|152934833|gb|ABS40331.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum F str. Langeland] Length = 319 Score = 38.5 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +C +C ++ +++ +++ + G + R+ TG Sbjct: 10 NYLRVSVTDRCNLRCVYCMPPEGIVKKEHDNIMRYEEIFKVVKSASLLGVNKIRF---TG 66 Query: 93 GEPLLQVDV 101 GEPL+ D+ Sbjct: 67 GEPLILKDI 75 >gi|160879625|ref|YP_001558593.1| molybdenum cofactor biosynthesis protein A [Clostridium phytofermentans ISDg] gi|160428291|gb|ABX41854.1| molybdenum cofactor biosynthesis protein A [Clostridium phytofermentans ISDg] Length = 332 Score = 38.5 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 59/167 (35%), Gaps = 23/167 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + K ++ +++ R +TGGEP+++ D Sbjct: 18 DRCNLRCTYC----MPEDVEKLEHESILTYEEILRICKSASSLGIRKIKITGGEPMVRKD 73 Query: 101 -VPLIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS-PKAGCDL--KIKGGQ 147 V L+ + G E + + TNG + +D + VS D KI Sbjct: 74 AVKLMANIKAIPGIEFVTLTTNGVLLEEHVEELAKIPLDGVNVSLDTLNTDTFKKITRRD 133 Query: 148 ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE---NTNLAISY 191 E V+ + E I P G EE LA+ Y Sbjct: 134 EFLKVWNGIQKLIEAGIPTKINCV---PQKGVNEEELMDIAELAVKY 177 >gi|94993708|ref|YP_601806.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes MGAS10750] gi|94547216|gb|ABF37262.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes MGAS10750] Length = 287 Score = 38.5 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 36/178 (20%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G +F GC L +C++C DT + +K Sbjct: 40 TESFGSVDGPGIRFI----IF--LQGCKL-----------RCQYCHNPDTWEMETNNSKI 82 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVET 118 N D L + ++ + G+K G ++GGE +LQ+D I AL K G ++T Sbjct: 83 RTVN-DVLKEALQYKHFWGKKGG--ITVSGGEAMLQID--FITALFIEAKKLGIHTTLDT 137 Query: 119 NG-TIEPPQGIDWI-----CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 G T P + V+ DLK ++ K+V Q N + + + ++ Sbjct: 138 CGFTYRPTPEYHQVLDNLLAVTDLILLDLKEIDEKQHKIVTRQPNKNILQFARYLSDK 195 >gi|50913690|ref|YP_059662.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes MGAS10394] gi|50902764|gb|AAT86479.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes MGAS10394] Length = 287 Score = 38.5 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 36/178 (20%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G +F GC L +C++C DT + +K Sbjct: 40 TESFGSVDGPGIRFI----IF--LQGCKL-----------RCQYCHNPDTWEMETNNSKI 82 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVET 118 N D L + ++ + G+K G ++GGE +LQ+D I AL K G ++T Sbjct: 83 RTVN-DVLKEALQYKHFWGKKGG--ITVSGGEAMLQID--FITALFIEAKKLGIHTTLDT 137 Query: 119 NG-TIEPPQGIDWI-----CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 G T P + V+ DLK ++ K+V Q N + + + ++ Sbjct: 138 CGFTYRPTPEYHQVLDNLLAVTDLILLDLKEIDEKQHKIVTRQPNKNILQFARYLSDK 195 >gi|149174199|ref|ZP_01852827.1| molybdopterin cofactor synthesis protein A [Planctomyces maris DSM 8797] gi|148847179|gb|EDL61514.1| molybdopterin cofactor synthesis protein A [Planctomyces maris DSM 8797] Length = 333 Score = 38.5 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 14/91 (15%) Query: 41 DRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 DR + +C +C D FV + + +++ I G + R LTGGEPL Sbjct: 24 DRCNIRCFYCMPSEDVQFVH----RSKIMSFEEIVRFIRLVVPLGVDKIR---LTGGEPL 76 Query: 97 LQVDVP-LIQALNK-RGFE-IAVETNGTIEP 124 ++ ++P L++ + G + I + TNG + P Sbjct: 77 VRKNIPELVKMIADIPGIKDIGITTNGILLP 107 >gi|148379902|ref|YP_001254443.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum A str. ATCC 3502] gi|153932339|ref|YP_001384199.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum A str. ATCC 19397] gi|153937083|ref|YP_001387740.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum A str. Hall] gi|226949238|ref|YP_002804329.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum A2 str. Kyoto] gi|166217245|sp|A7FUZ6|MOAA_CLOB1 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|166217246|sp|A5I365|MOAA_CLOBH RecName: Full=Molybdenum cofactor biosynthesis protein A gi|254811539|sp|C1FPG7|MOAA_CLOBJ RecName: Full=Molybdenum cofactor biosynthesis protein A gi|148289386|emb|CAL83482.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum A str. ATCC 3502] gi|152928383|gb|ABS33883.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum A str. ATCC 19397] gi|152932997|gb|ABS38496.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum A str. Hall] gi|226843612|gb|ACO86278.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum A2 str. Kyoto] gi|322806201|emb|CBZ03769.1| molybdenum cofactor biosynthesis protein MoaA [Clostridium botulinum H04402 065] Length = 319 Score = 38.5 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +C +C ++ +++ +++ + G + R+ TG Sbjct: 10 NYLRVSVTDRCNLRCVYCMPPEGIVKKEHDNIMRYEEIFKVVKSASLLGVNKIRF---TG 66 Query: 93 GEPLLQVDV 101 GEPL+ D+ Sbjct: 67 GEPLILKDI 75 >gi|145595122|ref|YP_001159419.1| radical SAM domain-containing protein [Salinispora tropica CNB-440] gi|145304459|gb|ABP55041.1| Radical SAM domain protein [Salinispora tropica CNB-440] Length = 523 Score = 38.5 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 16/93 (17%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 +GCNL C F D+ G +Q+ D+ + E E + Sbjct: 98 TGCNLDCPI--------C-FADSGH-QTDGYSINLAQCEQMLDVF----VASEGEAEVVM 143 Query: 90 LTGGEPLLQ-VDVPLIQALNKRGFE-IAVETNG 120 +GGEP + + + A R + + TNG Sbjct: 144 FSGGEPTIHRQILDFVDAAQARPIRAVNLNTNG 176 >gi|296132657|ref|YP_003639904.1| Radical SAM domain protein [Thermincola sp. JR] gi|296031235|gb|ADG82003.1| Radical SAM domain protein [Thermincola potens JR] Length = 331 Score = 38.5 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 4/79 (5%) Query: 49 FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL 107 +CD + N ++ L++E G + + +GGEP ++ D+ L+ Sbjct: 14 YCDHCYRDAGAKATEELNTEEGKALLDEIAKAG---FKIMIFSGGEPFMREDIFDLVAHA 70 Query: 108 NKRGFEIAVETNGTIEPPQ 126 K G TNGT+ P Sbjct: 71 KKLGLHPVFGTNGTLITPD 89 >gi|170755099|ref|YP_001781504.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum B1 str. Okra] gi|226704813|sp|B1IN35|MOAA_CLOBK RecName: Full=Molybdenum cofactor biosynthesis protein A gi|169120311|gb|ACA44147.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum B1 str. Okra] Length = 319 Score = 38.5 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +C +C ++ +++ +++ + G + R+ TG Sbjct: 10 NYLRVSVTDRCNLRCVYCMPPEGIVKKEHDNIMRYEEIFKVVKSASLLGVNKIRF---TG 66 Query: 93 GEPLLQVDV 101 GEPL+ D+ Sbjct: 67 GEPLILKDI 75 >gi|162146326|ref|YP_001600785.1| radical SAM superfamily protein [Gluconacetobacter diazotrophicus PAl 5] gi|161784901|emb|CAP54444.1| radical SAM superfamily protein [Gluconacetobacter diazotrophicus PAl 5] Length = 330 Score = 38.5 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 20/90 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C ++ L ++ G T Sbjct: 41 CNL-----------ACGYC-----NEFDDFSAPVPLEVLKARVDHLATLGTAS---ITFT 81 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 GGEPLL D+ +++ G + TNG Sbjct: 82 GGEPLLHPDLDKIVRIARDHGMIVTTITNG 111 >gi|124486007|ref|YP_001030623.1| hypothetical protein Mlab_1187 [Methanocorpusculum labreanum Z] gi|124363548|gb|ABN07356.1| Radical SAM domain protein [Methanocorpusculum labreanum Z] Length = 387 Score = 38.5 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 21/96 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R + C + +V + ++ + G + +L Sbjct: 93 CNLHCAGCYARATGMC-------GDEKPAGAEPMSVPEWENIFLQAEGLG---ISFILLA 142 Query: 92 GGEPLLQVDVPLIQALNKRG-----FEIAVETNGTI 122 GGEPLL+ D LI+A G F I TNGT+ Sbjct: 143 GGEPLLRRD--LIEA--AAGHSSIIFPIF--TNGTL 172 >gi|297627043|ref|YP_003688806.1| Fe-S oxidoreductase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922808|emb|CBL57386.1| Fe-S oxidoreductase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 373 Score = 38.5 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 4/74 (5%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP- 102 CR C G D+ +++E G + + TGG+P+ + D+ Sbjct: 33 GLACRHC--RATAQPDPAPGELTTDEALGVLDEFAGFGS-PAPHVIFTGGDPMRRGDLDQ 89 Query: 103 LIQALNKRGFEIAV 116 LI A N+RG +++ Sbjct: 90 LIAAANQRGLGVSL 103 >gi|159038471|ref|YP_001537724.1| radical SAM domain-containing protein [Salinispora arenicola CNS-205] gi|157917306|gb|ABV98733.1| Radical SAM domain protein [Salinispora arenicola CNS-205] Length = 389 Score = 38.5 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 15/94 (15%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 C L CR + D+ DL+ + G + Sbjct: 20 TQACPLAC--------LHCR-----ASARPDRDRAELDTDEAIDLMAQIAALGRPTPLFV 66 Query: 89 VLTGGEPLLQVDVPLI-QALNKRGFEIAVETNGT 121 +TGG+P + D+ L+ + + G ++V +GT Sbjct: 67 -ITGGDPFQRPDLELLVRRGTELGLPVSVSPSGT 99 >gi|91201046|emb|CAJ74104.1| similar to moaA/nirJ/ppqE family of cofactor synthesis proteins [Candidatus Kuenenia stuttgartiensis] Length = 350 Score = 38.5 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + +++++ ++++ G K + +L Sbjct: 38 CNL-----------RCLYC---YSSAGFAAENELSLEEMKSVVDQAKGLGAK--KIILLG 81 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GGEPLL V +I+ +N G + + TNG + Sbjct: 82 GGEPLLYEGVVDIIKYINSIGLQQILFTNGVL 113 >gi|262194533|ref|YP_003265742.1| radical SAM protein [Haliangium ochraceum DSM 14365] gi|262077880|gb|ACY13849.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365] Length = 310 Score = 38.5 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 25/148 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C CD Y ++ ++ + V+ Sbjct: 17 CNL-----------KCAGCD--HASPWFETKSLYALETFERDLDALTAVMDIGE--LVIA 61 Query: 92 GGEPLLQV-DVPLIQALNKRGFE--IAVETNGTI------EPPQGIDWICVSPKAGCDLK 142 GGEPLL + ++ ++ + + + TNG Q +D I VS G ++ Sbjct: 62 GGEPLLHPELLSFLELAKRKRYADGVTLITNGVHLHRAPVALWQLLDGISVSRYPGVRIR 121 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFER 170 + E++ + + + F+ Sbjct: 122 LSD-DEMRTLGTRHGTAVIIEESSTFKH 148 >gi|206975055|ref|ZP_03235969.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus H3081.97] gi|229138875|ref|ZP_04267455.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BDRD-ST26] gi|206746476|gb|EDZ57869.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus H3081.97] gi|228644606|gb|EEL00858.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BDRD-ST26] Length = 337 Score = 38.5 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 14/89 (15%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D+ +Q + D++ L G + R LTGGE Sbjct: 22 DRCNFRCTYCMPAEVFGADYAFLQEEF--LLSFDEIERLARLFISMGVNKIR---LTGGE 76 Query: 95 PLLQVDVP-LIQAL-NKRGFE-IAVETNG 120 PLL+ D+ LI L G + I + TNG Sbjct: 77 PLLRKDLSQLIARLTKLEGLKDIGLTTNG 105 >gi|52549924|gb|AAU83773.1| coenzyme PQQ synthesis protein [uncultured archaeon GZfos33H6] Length = 317 Score = 38.5 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 17/88 (19%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY- 87 +GC+ CR C F + G + ++ E+ + + Sbjct: 22 LTGCDF-----------HCRGC---FRPARDGGGTLLSPEETLKRAEQACLKHYGKLPTK 67 Query: 88 CVLTGGEPLLQV--DVPLIQALNKRGFE 113 ++TGGEP L + L++ L ++GFE Sbjct: 68 AMITGGEPTLDKEFLLTLVKGLEEKGFE 95 >gi|256832474|ref|YP_003161201.1| molybdenum cofactor biosynthesis protein A [Jonesia denitrificans DSM 20603] gi|256686005|gb|ACV08898.1| molybdenum cofactor biosynthesis protein A [Jonesia denitrificans DSM 20603] Length = 353 Score = 38.5 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 8/84 (9%) Query: 41 DRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 D+ + +C +C G++ K + +VD++ + G E R LTGGEPLL Sbjct: 46 DKCNLRCTYC-MPEEGMEWIAKSQQLSVDEMVRIAAVAVGHGITEIR---LTGGEPLLYP 101 Query: 100 D-VPLIQALNKRGF--EIAVETNG 120 V + Q L E+++ TNG Sbjct: 102 QVVEITQRLAALDGAPEVSMTTNG 125 >gi|188585754|ref|YP_001917299.1| Radical SAM domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350441|gb|ACB84711.1| Radical SAM domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 327 Score = 38.5 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 21/129 (16%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L S C+ C + ++ L++E G + + +GG Sbjct: 2 LVSWNTTKSCHLNCKHC---YRDAGEADSRELTTEEGKKLLDEIKTAG---FKLIIFSGG 55 Query: 94 EPL-LQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK----IKGGQE 148 EPL Q L+ K G + T+GT ++ K LK ++ G Sbjct: 56 EPLERQDIYKLVSYAKKIGLRPVLGTSGT----------TITRKVARKLKEAGAVRLGIS 105 Query: 149 LKLVFPQVN 157 L V P+V+ Sbjct: 106 LDSVHPEVH 114 >gi|161484628|ref|NP_064426.2| molybdenum cofactor biosynthesis protein 1 isoform 1 [Mus musculus] gi|226707540|sp|Q5RKZ7|MOCS1_MOUSE RecName: Full=Molybdenum cofactor biosynthesis protein 1; Includes: RecName: Full=Molybdenum cofactor biosynthesis protein A; Includes: RecName: Full=Molybdenum cofactor biosynthesis protein C Length = 636 Score = 38.5 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + K +++ L G + R LT Sbjct: 80 CNL-----------RCQYCMPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 125 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GGEPL++ D V ++ L+ G I + TNG Sbjct: 126 GGEPLIRPDVVDIVARLHGLEGLRTIGLTTNG 157 >gi|40217429|emb|CAE46362.1| hypothetical protein C2_0004 [uncultured archaeon] gi|268323812|emb|CBH37400.1| hypothetical protein, radical SAM superfamily [uncultured archaeon] Length = 317 Score = 38.5 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 17/88 (19%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY- 87 +GC+ CR C F + G + ++ E+ + + Sbjct: 22 LTGCDF-----------HCRGC---FRPARDGGGTLLSPEETLKRAEQACLKHYGKLPTK 67 Query: 88 CVLTGGEPLLQV--DVPLIQALNKRGFE 113 ++TGGEP L + L++ L ++GFE Sbjct: 68 AMITGGEPTLDKEFLLTLVKGLEEKGFE 95 >gi|19745536|ref|NP_606672.1| putative pyruvate-formatelyase activating enzyme [Streptococcus pyogenes MGAS8232] gi|71902973|ref|YP_279776.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes MGAS6180] gi|71910132|ref|YP_281682.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes MGAS5005] gi|94989822|ref|YP_597922.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes MGAS10270] gi|209558873|ref|YP_002285345.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes NZ131] gi|306827942|ref|ZP_07461209.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes ATCC 10782] gi|19747656|gb|AAL97171.1| putative pyruvate-formatelyase activating enzyme [Streptococcus pyogenes MGAS8232] gi|71802068|gb|AAX71421.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes MGAS6180] gi|71852914|gb|AAZ50937.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes MGAS5005] gi|94543330|gb|ABF33378.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes MGAS10270] gi|209540074|gb|ACI60650.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes NZ131] gi|304429861|gb|EFM32903.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes ATCC 10782] Length = 287 Score = 38.5 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 36/178 (20%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G +F GC L +C++C DT + +K Sbjct: 40 TESFGSVDGPGIRFI----IF--LQGCKL-----------RCQYCHNPDTWEMETNNSKI 82 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVET 118 N D L + ++ + G+K G ++GGE +LQ+D I AL K G ++T Sbjct: 83 RTVN-DVLKEALQYKHFWGKKGG--ITVSGGEAMLQID--FITALFIEAKKLGIHTTLDT 137 Query: 119 NG-TIEPPQGIDWI-----CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 G T P + V+ DLK ++ K+V Q N + + + ++ Sbjct: 138 CGFTYRPTPEYHQVLDNLLAVTDLILLDLKEIDEKQHKIVTRQPNKNILQFARYLSDK 195 >gi|91978781|ref|YP_571440.1| radical SAM family protein [Rhodopseudomonas palustris BisB5] gi|91685237|gb|ABE41539.1| Radical SAM [Rhodopseudomonas palustris BisB5] Length = 359 Score = 38.5 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 5/89 (5%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100 R +A C C ++ G G + ++ LI++ G +GGEP+L Sbjct: 24 RCNAHCVHCYSN-SGPDADLGDQLSLQSGLSLIDQLADAG---VLVLAFSGGEPMLHRHW 79 Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGID 129 L+ +RG + + +NG+ D Sbjct: 80 RELVAHAVQRGLSVNIASNGSCITDSNAD 108 >gi|302542868|ref|ZP_07295210.1| radical SAM [Streptomyces hygroscopicus ATCC 53653] gi|302460486|gb|EFL23579.1| radical SAM [Streptomyces himastatinicus ATCC 53653] Length = 321 Score = 38.5 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 19/104 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL CR C + G + +I++ G ++ ++ Sbjct: 19 CNL-----------NCRHC---YANSSSQGDHGDMSDADWIRVIDQLNGLGVRDVQFI-- 62 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICV 133 GGEP L +P I+ +K I V +N T P+ + + + Sbjct: 63 -GGEPTLHQSLPAFIRHAHKYAMRIEVFSNMTHIRPEVWEALTL 105 >gi|170289662|ref|YP_001736478.1| radical SAM domain-containing protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170173742|gb|ACB06795.1| Radical SAM domain protein [Candidatus Korarchaeum cryptofilum OPF8] Length = 356 Score = 38.5 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 26/121 (21%) Query: 31 GCNL-WSGREQDRLSAQ-------CRFCDTDFVGIQGTKG----GRYNVDQLADLIEEQW 78 GC+L W G + C +C T +G ++ + LIEE Sbjct: 17 GCDLCWKGAKSVLFITGECPLYGSCFYC-TIADWRRGKGDLIIVNERTIEDESSLIEE-- 73 Query: 79 ITGEKEGRYCVLTGGEPLLQVDV--PLIQALNK---RGFEIAVETNGTIEPPQGIDWICV 133 +TGGEP + D ++ L + R F + + TN GID + Sbjct: 74 -IEYNSSLGVGITGGEPTIVPDRVYEYVKLLKERFGRDFHVHLYTN-----SIGIDERAL 127 Query: 134 S 134 S Sbjct: 128 S 128 >gi|217959681|ref|YP_002338233.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH187] gi|217066262|gb|ACJ80512.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH187] Length = 337 Score = 38.5 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 14/89 (15%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D+ +Q + D++ L G + R LTGGE Sbjct: 22 DRCNFRCTYCMPAEVFGADYAFLQEEF--LLSFDEIERLARLFISMGVNKIR---LTGGE 76 Query: 95 PLLQVDVP-LIQAL-NKRGFE-IAVETNG 120 PLL+ D+ LI L G + I + TNG Sbjct: 77 PLLRKDLSQLIARLTKLEGLKDIGLTTNG 105 >gi|115374760|ref|ZP_01462036.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1] gi|115368237|gb|EAU67196.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1] Length = 328 Score = 38.5 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 15/99 (15%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VP 102 +C C ++ G + R +V ++A+ I R L+GGEP L Sbjct: 6 PLRCTHCYSE-SGRRPAVARREDVLRIAEEIIRV------NPRDVELSGGEPFLAPGWEE 58 Query: 103 LIQALNKRGFEIAVETNG-------TIEPPQGIDWICVS 134 +Q L+ G + + T+G + +CVS Sbjct: 59 AVQRLSGAGIAVNLYTSGWSMDMALAKRLAGTVSRVCVS 97 >gi|58039087|ref|YP_191051.1| hypothetical protein GOX0617 [Gluconobacter oxydans 621H] gi|58001501|gb|AAW60395.1| Hypothetical protein GOX0617 [Gluconobacter oxydans 621H] Length = 397 Score = 38.5 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Query: 82 EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140 E + GGEPLL ++P +++ L R + + TNG + + +D SP D Sbjct: 70 EAGAPVIAIAGGEPLLHKEMPQIVKGLIGRKKYVYLCTNG-LLLEKKLDDYEPSPFFSWD 128 Query: 141 LKIKG 145 + + G Sbjct: 129 VHLDG 133 >gi|317486932|ref|ZP_07945742.1| glycyl-radical enzyme activating family protein [Bilophila wadsworthia 3_1_6] gi|316921807|gb|EFV43083.1| glycyl-radical enzyme activating family protein [Bilophila wadsworthia 3_1_6] Length = 299 Score = 38.5 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 14/102 (13%) Query: 26 FCR-FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 F R FS C + G ++ C T G Y+ D + +I + Sbjct: 78 FLRDFSRC-VGCGACAEQ-------CPT---TASSMSGREYDADAIMKVIRKDASFFSNS 126 Query: 85 GRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124 G +GGE +Q + L++A G ++T G +P Sbjct: 127 GGGVTFSGGECTMQGAFLMELVEACLNEGLHTCIDTCGQTDP 168 >gi|317153677|ref|YP_004121725.1| Radical SAM domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316943928|gb|ADU62979.1| Radical SAM domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 356 Score = 38.5 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 21/84 (25%) Query: 31 GCNLWSGREQDRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 GCN +CR+C D+ +G D++ +++++ G K Sbjct: 40 GCN-----------HRCRYCAYRADSLQLGKDMRISDSIPRDRMLEIVDDIIAMGVKG-- 86 Query: 87 YCVLTGG-EPLLQVDVPLIQALNK 109 +GG EPL L+ L+K Sbjct: 87 -VTFSGGGEPLFYPH--LVDVLHK 107 >gi|255657240|ref|ZP_05402649.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium difficile QCD-23m63] gi|296451920|ref|ZP_06893636.1| pyruvate formate-lyase activating enzyme [Clostridium difficile NAP08] gi|296879687|ref|ZP_06903662.1| pyruvate formate-lyase activating enzyme [Clostridium difficile NAP07] gi|296259234|gb|EFH06113.1| pyruvate formate-lyase activating enzyme [Clostridium difficile NAP08] gi|296429276|gb|EFH15148.1| pyruvate formate-lyase activating enzyme [Clostridium difficile NAP07] Length = 302 Score = 38.5 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 11/100 (11%) Query: 32 CN----LWSGREQDRLSAQCRFCDT--DFVGIQGTK--GGRYNVDQLADLIEEQWITGEK 83 C + +C FC+T D+ + G Y+V L I++ I E+ Sbjct: 64 CPHKAIYKGETKICLDQDKCEFCETCLDYCVNNAREIVGQEYSVRDLVKEIDKDRIFYEE 123 Query: 84 EGRYCVLTGGEPLLQVDV---PLIQALNKRGFEIAVETNG 120 G L+GGE + Q +I +G +A++T G Sbjct: 124 SGGGVTLSGGEVMAQDMDFICGVINMCKSKGIHVAIDTCG 163 >gi|329904141|ref|ZP_08273687.1| Transcriptional regulator [Oxalobacteraceae bacterium IMCC9480] gi|327548124|gb|EGF32841.1| Transcriptional regulator [Oxalobacteraceae bacterium IMCC9480] Length = 404 Score = 38.5 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 41/126 (32%), Gaps = 26/126 (20%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-----LADLIEEQWITGEKE 84 CNL C +C G K + + LA+ I E + Sbjct: 26 QRCNL-----------DCTYCYVYNRGDDSWKSRPPVISERVLLRLAERINEHCRRHQLS 74 Query: 85 GRYCVLTGGEPLL------QVDVPLI-QALNKRGFEIAVETNGTIEPPQGIDWIC---VS 134 L GGEPLL Q + L+ ++ ++TNG + ID + VS Sbjct: 75 SFTIELHGGEPLLIGKRKMQALLTLLRSRIDAAHVRFTMQTNGLLLDSAWIDLLAQHQVS 134 Query: 135 PKAGCD 140 D Sbjct: 135 FGISLD 140 >gi|302379500|ref|ZP_07267987.1| molybdenum cofactor biosynthesis protein A [Finegoldia magna ACS-171-V-Col3] gi|302312845|gb|EFK94839.1| molybdenum cofactor biosynthesis protein A [Finegoldia magna ACS-171-V-Col3] Length = 315 Score = 38.5 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D+ + +C++C + +D+ ++E G K+ R LTGGEPL++ Sbjct: 18 DKCNLRCKYCMPEEGITHLNHDEILTIDETLKIVEVFKDLGIKKVR---LTGGEPLVRNG 74 Query: 101 -VPLIQALNKRGF-EIAVETN 119 + L++ + G EI + TN Sbjct: 75 ILDLVKGIKDMGIEEICMTTN 95 >gi|270001734|gb|EEZ98181.1| hypothetical protein TcasGA2_TC000610 [Tribolium castaneum] Length = 545 Score = 38.5 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 26/114 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C++C G++ + + D++ + G + R L Sbjct: 57 CNL-----------RCQYC-MPEEGVKLSPSEKILTSDEIIQISRLFVNEGVTKIR---L 101 Query: 91 TGGEPLL-QVDVPLIQALNK-RGFE-IAVETNG---TIEPP----QGIDWICVS 134 TGGEP + + + +I+ L K G E +A+ TNG T + G+D + +S Sbjct: 102 TGGEPTVRRDLLAIIENLKKIEGLETVAMTTNGLTLTRQLVALQRAGLDIVNIS 155 >gi|237752901|ref|ZP_04583381.1| MoaA/NifB/PqqE family protein [Helicobacter winghamensis ATCC BAA-430] gi|229375168|gb|EEO25259.1| MoaA/NifB/PqqE family protein [Helicobacter winghamensis ATCC BAA-430] Length = 305 Score = 38.5 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 5/91 (5%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDV-PLI 104 C +C+ + Q + +VD++ + I+ Q + +T GEP L + L+ Sbjct: 32 CLYCELEGKKAQESMREVLSVDEILEAIK-QGLEKFPNVESLTITANGEPTLYPHLYELM 90 Query: 105 QALNKR--GFEIAVETNGTIEPPQGIDWICV 133 L + + TNG + + C+ Sbjct: 91 LRLEDIKGDKQTLLLTNGALLWDLCVARACL 121 >gi|226334870|ref|YP_002784542.1| putative molybdenum cofactor biosynthesis protein [Rhodococcus opacus B4] gi|226246090|dbj|BAH56190.1| putative molybdenum cofactor biosynthesis protein [Rhodococcus opacus B4] Length = 305 Score = 38.5 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 19/107 (17%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 GR+ VF CNL C +C KG Y DQL D Sbjct: 6 GRLRVFL-TEQCNL-----------ACFYC----HNEGQPKGSAYLSDQLFDAAVSMSRQ 49 Query: 81 GEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ 126 E E +L+GGEPLL + L++A++ ++ TNG + P Sbjct: 50 PEVEK--VILSGGEPLLHPRVLELVEAVSPNVARSSLITNGLLLTPS 94 >gi|209543671|ref|YP_002275900.1| Radical SAM domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|209531348|gb|ACI51285.1| Radical SAM domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 333 Score = 38.5 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 20/90 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C ++ L ++ G T Sbjct: 44 CNL-----------ACGYC-----NEFDDFSAPVPLEVLKARVDHLAKLGTAS---ITFT 84 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 GGEPLL D+ +++ G + TNG Sbjct: 85 GGEPLLHPDLDKIVRIARDHGMIVTTITNG 114 >gi|94991832|ref|YP_599931.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes MGAS2096] gi|94545340|gb|ABF35387.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes MGAS2096] Length = 287 Score = 38.5 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 68/180 (37%), Gaps = 40/180 (22%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G +F GC L +C++C DT Sbjct: 40 TESFGSVDGPGIRFI----IF--LQGCKL-----------RCQYCHNPDT-----WEMAN 77 Query: 63 GRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQAL----NKRGFEIAV 116 ++ + + D+++E G+ ++GGE +LQ+D I AL K G + Sbjct: 78 QQFKIRTVNDVLKEALQYKHFWGKKGGITVSGGEAMLQID--FITALFIEAKKLGIHTTL 135 Query: 117 ETNG-TIEPPQGIDWI-----CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 +T G T P + V+ DLK ++ K+V Q N + + + ++ Sbjct: 136 DTCGFTYRPTPEYHQVLDNLLAVTDLILLDLKEIDEKQHKIVTRQPNKNILQFARYLSDK 195 >gi|320642894|gb|EFX12095.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O157:H- str. 493-89] gi|320648351|gb|EFX17006.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O157:H- str. H 2687] Length = 215 Score = 38.5 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 9/80 (11%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101 +C +C DT G V+ L + G +GGE +LQ + Sbjct: 2 RCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFV 57 Query: 102 -PLIQALNKRGFEIAVETNG 120 +A K G ++TNG Sbjct: 58 RDWFRACKKEGIHTCLDTNG 77 >gi|85813914|emb|CAF31543.1| conserved hypothetical protein; putative fortimicin production protein [Micromonospora olivasterospora] Length = 379 Score = 38.5 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 15/106 (14%) Query: 32 CNLWSGREQDRLSAQCR-FCDT--DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL +C + D+ + + K + +++ L++E G +E Y Sbjct: 28 CNLTC--------RECWMYGDSAAESTWLPEVKRDQMSIEMWTALVDEL-AAGNREKVYL 78 Query: 89 VLTGGEPLLQVD-VPLIQALNKR--GFEIAVETNGTIEPPQGIDWI 131 + GGEPL+ D V LI+ R + + TN T+ P D + Sbjct: 79 TIMGGEPLMHRDVVELIRIAKTRMPNSNLDMSTNATLLPRFADDIV 124 >gi|148259102|ref|YP_001233229.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acidiphilium cryptum JF-5] gi|326402254|ref|YP_004282335.1| coenzyme PQQ synthesis protein E [Acidiphilium multivorum AIU301] gi|146400783|gb|ABQ29310.1| coenzyme PQQ biosynthesis protein E [Acidiphilium cryptum JF-5] gi|325049115|dbj|BAJ79453.1| coenzyme PQQ synthesis protein E [Acidiphilium multivorum AIU301] Length = 373 Score = 38.5 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 6/89 (6%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R +C +C + + + +I E G +G + +GGEP+++ D+ Sbjct: 29 RCPLKCPYCSNPLAMDRA--RDEMSTETWKRVISEAAALGALQGHF---SGGEPMVRDDL 83 Query: 102 -PLIQALNKRGFEIAVETNGTIEPPQGID 129 L++ ++ G + T+ + + +D Sbjct: 84 VELVRHAHREGLYTNLITSAVLLDKRRMD 112 >gi|332158633|ref|YP_004423912.1| co-factor modifying protein [Pyrococcus sp. NA2] gi|331034096|gb|AEC51908.1| co-factor modifying protein [Pyrococcus sp. NA2] Length = 238 Score = 38.5 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 31/108 (28%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 F GCN +C +C V + T+ ++ ++ WI G Sbjct: 19 FDGCN-----------WKCSYC----VWREVTRWSLCLPEERRKELDMLWINGRVRYLRL 63 Query: 89 --VLT-------------GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 V++ GGEP L ++ PL++AL++ G ++ + TNG Sbjct: 64 EEVVSMLKRNSVKFAFFGGGEPTLDPELKPLLRALSREGIKVWLVTNG 111 >gi|322367966|ref|ZP_08042535.1| Wyosine base formation domain protein [Haladaptatus paucihalophilus DX253] gi|320551982|gb|EFW93627.1| Wyosine base formation domain protein [Haladaptatus paucihalophilus DX253] Length = 346 Score = 38.5 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 72 DLIEEQWITGEKEGRYCVLT-GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 D + + E R+ ++ GEP L +P LI+A + R + +NGT Sbjct: 126 DEVPREIFEESMEPRHVAISLDGEPTLYPYLPELIEAFHDRDITTFLVSNGTNP 179 >gi|312795399|ref|YP_004028321.1| Oxygen-independent coproporphyrinogen-III oxidase [Burkholderia rhizoxinica HKI 454] gi|312167174|emb|CBW74177.1| Oxygen-independent coproporphyrinogen-III oxidase (EC 1.3.99.22) [Burkholderia rhizoxinica HKI 454] Length = 426 Score = 38.5 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 15/107 (14%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGR 86 L +C +CD + +G ++ + D + + Sbjct: 45 PLSLYVHFPWCVHKCPYCDFNSHAFTRGPNDAQFPETEYLDALRADLEAALPLIWGRPVH 104 Query: 87 YCVLTGGEPLL---QVDVPLIQAL-----NKRGFEIAVETN-GTIEP 124 + GG P L Q L+ L EI +E N GT E Sbjct: 105 TVFIGGGTPSLLSAQAIDRLLSDLRALLPLDADAEITLEANPGTFEA 151 >gi|293394872|ref|ZP_06639162.1| cfr family radical SAM enzyme [Serratia odorifera DSM 4582] gi|291422623|gb|EFE95862.1| cfr family radical SAM enzyme [Serratia odorifera DSM 4582] Length = 398 Score = 38.5 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I Q +TG++ V+ G Sbjct: 132 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAQKVTGQRPITNVVMMG 191 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL ++ VP ++ L+ GF + + T+G + + D I V Sbjct: 192 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 242 >gi|170289717|ref|YP_001736533.1| radical SAM domain-containing protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170173797|gb|ACB06850.1| Radical SAM domain protein [Candidatus Korarchaeum cryptofilum OPF8] Length = 477 Score = 38.5 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 10/95 (10%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 +W + R + C C + N+++ ++ + G +G Sbjct: 117 VWDFTK--RCNLSCLHC---YANASYLPPPDELNLEERLSVLSQLDEAGVAA---ISFSG 168 Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 GEPL+ D + + + G I++ TNGT+ P+ Sbjct: 169 GEPLIVPDFWEVARRAAQAGMYISIATNGTLIKPE 203 >gi|212704139|ref|ZP_03312267.1| hypothetical protein DESPIG_02194 [Desulfovibrio piger ATCC 29098] gi|212672499|gb|EEB32982.1| hypothetical protein DESPIG_02194 [Desulfovibrio piger ATCC 29098] Length = 321 Score = 38.5 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 10/105 (9%) Query: 30 SGCNLWSGREQD----RLSAQCRFCDTDFVGIQGT----KGGRYNVDQLADLIEEQWITG 81 C + E+D R ++C C + G Y V+++ ++ + Sbjct: 86 QVCRYGAVTEKDQVIGRDLSRCTGCGQCAAQCPTSASSLSGREYEVEEVMRVVRKDASFF 145 Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124 G +GGE +Q D + L+ A + ++T G +P Sbjct: 146 GNSGGGVTFSGGECTMQPDFLMALVDACQDEALHVCIDTCGQTDP 190 >gi|94987948|ref|YP_596049.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes MGAS9429] gi|94541456|gb|ABF31505.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes MGAS9429] Length = 287 Score = 38.5 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 36/178 (20%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G +F GC L +C++C DT + +K Sbjct: 40 TESFGSVDGPGIRFI----IF--LQGCKL-----------RCQYCHNPDTWEMETNNSKI 82 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVET 118 N D L + ++ + G+K G ++GGE +LQ+D I AL K G ++T Sbjct: 83 RTVN-DVLKEALQYKHFWGKKGG--ITVSGGEAMLQID--FITALFIEAKKLGIHTTLDT 137 Query: 119 NG-TIEPPQGIDWI-----CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 G T P + V+ DLK ++ K+V Q N + + + ++ Sbjct: 138 CGFTYRPTPEYHQVLDNLLAVTDLILLDLKEIDEKQHKIVTRQPNKNILQFARYLSDK 195 >gi|312602669|ref|YP_004022514.1| molybdenum cofactor biosynthesis protein A [Burkholderia rhizoxinica HKI 454] gi|312169983|emb|CBW76995.1| Molybdenum cofactor biosynthesis protein A [Burkholderia rhizoxinica HKI 454] Length = 373 Score = 38.5 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 22/120 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R +V + + ++E + Sbjct: 38 CNL-----------ACSGCGKIDY--PDPILNQRVSVAEALEAVDECG------APVVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEPLL D+P +++ + R + + TN + + I SP + + G +E+ Sbjct: 79 AGGEPLLHKDMPEIVKGIIARRKFVYLCTN-ALLLEKKIKDYQPSPFFVWSIHLDGDREM 137 >gi|225011453|ref|ZP_03701891.1| molybdenum cofactor biosynthesis protein A [Flavobacteria bacterium MS024-2A] gi|225003956|gb|EEG41928.1| molybdenum cofactor biosynthesis protein A [Flavobacteria bacterium MS024-2A] Length = 335 Score = 38.5 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 5/97 (5%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N +R + +C +C K N +++ L G + R LTG Sbjct: 17 NYLRISLTERCNLRCSYCMPQEGVTLTPKPQLMNAEEIFSLAALFVKNGVNKIR---LTG 73 Query: 93 GEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGI 128 GEPL++ D P ++ L++ ++++ T+ + I Sbjct: 74 GEPLVRKDFPDILSRLSQLPVQLSL-TSNAFSIDRHI 109 >gi|310824873|ref|YP_003957231.1| radical sam domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309397945|gb|ADO75404.1| Radical SAM domain protein [Stigmatella aurantiaca DW4/3-1] Length = 339 Score = 38.5 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 15/99 (15%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VP 102 +C C ++ G + R +V ++A+ I R L+GGEP L Sbjct: 17 PLRCTHCYSE-SGRRPAVARREDVLRIAEEIIRV------NPRDVELSGGEPFLAPGWEE 69 Query: 103 LIQALNKRGFEIAVETNG-------TIEPPQGIDWICVS 134 +Q L+ G + + T+G + +CVS Sbjct: 70 AVQRLSGAGIAVNLYTSGWSMDMALAKRLAGTVSRVCVS 108 >gi|302344325|ref|YP_003808854.1| molybdenum cofactor biosynthesis protein A [Desulfarculus baarsii DSM 2075] gi|301640938|gb|ADK86260.1| molybdenum cofactor biosynthesis protein A [Desulfarculus baarsii DSM 2075] Length = 348 Score = 38.5 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 4/76 (5%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +C +C G+ ++ L ++ + LTG Sbjct: 26 NYLRVSLTDRCNFRCIYC-MPPGGVDKIPHD--DILSLEEIARVARVAVAMGVDKIRLTG 82 Query: 93 GEPLLQVDVP-LIQAL 107 GEPLL+ ++P L+ L Sbjct: 83 GEPLLRRNLPVLLDKL 98 >gi|240169459|ref|ZP_04748118.1| Fe-S oxidoreductase [Mycobacterium kansasii ATCC 12478] Length = 491 Score = 38.5 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 27/135 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCN C +C + + R + D++ +L++ + Sbjct: 114 TGGCN-----------IACTYC---YDYDKTRFRARLDDDRIHELVD--VLIARNSHLSI 157 Query: 89 VLTGGEPLL-QVDVPLI-----QALNKRGFEI--AVETNGTIEPPQGIDWI---CVSPKA 137 GGEPLL + + G + +++TNG P +D++ S Sbjct: 158 AFHGGEPLLRWDQIKRTVSYARERAAAVGHLVSFSIQTNGLFFTPAVVDYLERESFSVGI 217 Query: 138 GCDLKIKGGQELKLV 152 D + L++V Sbjct: 218 SLDGSDEEANSLRVV 232 >gi|169825127|ref|YP_001692738.1| molybdenum cofactor biosynthesis protein A [Finegoldia magna ATCC 29328] gi|167831932|dbj|BAG08848.1| molybdenum cofactor biosynthesis protein A [Finegoldia magna ATCC 29328] Length = 315 Score = 38.5 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D+ + +C++C + +D+ ++E G K+ R LTGGEPL++ Sbjct: 18 DKCNLRCKYCMPEEGITHLNHDEILTIDETLKIVEVFKDLGIKKVR---LTGGEPLVRNG 74 Query: 101 -VPLIQALNKRGF-EIAVETN 119 + L++ + G EI + TN Sbjct: 75 ILDLVKGIKDMGIEEICMTTN 95 >gi|146295693|ref|YP_001179464.1| arylsulfatase regulator (Fe-S oxidoreductase)-like protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409269|gb|ABP66273.1| Arylsulfatase regulator (Fe-S oxidoreductase)-like protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 312 Score = 38.5 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 14/73 (19%) Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE-----TNGTIEPPQGI 128 I +++GGEP L+ D+ + L + I++E TNG P + I Sbjct: 5 IYSIKQLKNYGLNKIIISGGEPTLRDDLEFL--LREIKENISIEYVCLITNGIHFPEKLI 62 Query: 129 -------DWICVS 134 D + VS Sbjct: 63 NVVKKYVDEVSVS 75 >gi|161519801|ref|YP_001583228.1| hopanoid biosynthesis associated radical SAM protein HpnH [Burkholderia multivorans ATCC 17616] gi|189354020|ref|YP_001949647.1| radical SAM domain protein [Burkholderia multivorans ATCC 17616] gi|160343851|gb|ABX16936.1| hopanoid biosynthesis associated radical SAM protein HpnH [Burkholderia multivorans ATCC 17616] gi|189338042|dbj|BAG47111.1| radical SAM domain protein [Burkholderia multivorans ATCC 17616] Length = 386 Score = 38.5 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 23/142 (16%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R +V++ ++E + Sbjct: 38 CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEPLL ++P +++ + KR + + TN + + +D SP + + G +E+ Sbjct: 79 AGGEPLLHNEMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYQPSPYFVWSVHLDGDKEM 137 Query: 150 -KLVFPQVNVSPENYIGFDFER 170 Q V + + Sbjct: 138 HDHSVSQDGVYDKAVAAIKEAK 159 >gi|310643276|ref|YP_003948034.1| gtp cyclohydrolase subunit moaa [Paenibacillus polymyxa SC2] gi|309248226|gb|ADO57793.1| GTP cyclohydrolase subunit MoaA [Paenibacillus polymyxa SC2] Length = 338 Score = 38.5 bits (89), Expect = 0.68, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 24/94 (25%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D DF + K + +++ L E G K+ R LTGG Sbjct: 23 DRCNFRCSYCMPKEIFGD-DFAFL--PKSECLSFEEIHRLTELFVGLGVKKIR---LTGG 76 Query: 94 EPLLQVDVP-LIQAL------NKRGFEIAVETNG 120 EPL++ ++P L+ + G TNG Sbjct: 77 EPLMRPNLPDLVSRILSINGVEDMGLT----TNG 106 >gi|297153942|gb|ADI03654.1| putative radical activating enzyme [Streptomyces bingchenggensis BCW-1] Length = 214 Score = 38.5 bits (89), Expect = 0.68, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 19/83 (22%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 GC L +C+ C + G +V +LAD W+ Sbjct: 28 QGCPL-----------RCQGC-VAAETLPFEGGTSRSVAELAD-----WLCRLDGIEGVT 70 Query: 90 LTGGEPLLQ--VDVPLIQALNKR 110 +GGEP Q L+ A+ +R Sbjct: 71 FSGGEPFSQAGALAELLDAVRER 93 >gi|258593150|emb|CBE69461.1| Putative heme D1 biosynthesis protein (nirJ) involved in nitrite reductase biosynthesis [NC10 bacterium 'Dutch sediment'] Length = 406 Score = 38.5 bits (89), Expect = 0.68, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 14/111 (12%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + R + C C + D+ LI + + +L+G Sbjct: 34 PVVIWNLTRRCNLHCLHCYSQ--SQDRAYADELTTDEGKRLIADLT---GYKIPMLILSG 88 Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTI--------EPPQGIDWICVS 134 G+PL + D+ L + G A+ TNGT+ GI ++ VS Sbjct: 89 GDPLFREDLYTLAEHAQDLGLRCALSTNGTLIDAAAARRLRRLGITYVGVS 139 >gi|195542013|gb|ACF98210.1| putative Fe-S oxidoreductase [uncultured bacterium 1114] Length = 355 Score = 38.5 bits (89), Expect = 0.68, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 16/101 (15%) Query: 47 CRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG-EPLLQV-D 100 C FC D +G + R + +++ +++ + G + +GG EPL+ Sbjct: 44 CWFCAYRSDAVSLGNGMNERDRISREKMIEIVADLAAMGVEA---VTFSGGGEPLIYPHL 100 Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGID-------WICVS 134 V +I L G I TNG++ + D W+ VS Sbjct: 101 VEVIDRLAAGGIRIGALTNGSMLKGKVADAFARHGTWLRVS 141 >gi|212225057|ref|YP_002308293.1| tRNA-modifying enzyme [Thermococcus onnurineus NA1] gi|212010014|gb|ACJ17396.1| hypothetical protein, conserved [Thermococcus onnurineus NA1] Length = 328 Score = 38.5 bits (89), Expect = 0.68, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 GEP+L + L++ +KRGF + TNGT Sbjct: 142 GEPMLYPYMGDLVEEFHKRGFTTFIVTNGTAP 173 >gi|145588575|ref|YP_001155172.1| molybdenum cofactor biosynthesis protein A [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046981|gb|ABP33608.1| GTP cyclohydrolase subunit MoaA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 371 Score = 38.5 bits (89), Expect = 0.68, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 18/95 (18%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D ++ + + +++ L G ++ R LTGGE Sbjct: 48 DRCNFRCTYCMPKEVFDQNYPYLAHQ--ELLSFEEITRLTSIFSSLGVEKIR---LTGGE 102 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTI 122 PLL+ ++ LI+ L K + ++ + TNG+I Sbjct: 103 PLLRKNLEILIEMLAKIHTTVGKPLDLTLTTNGSI 137 >gi|90416699|ref|ZP_01224629.1| molybdenum cofactor biosynthesis protein A [marine gamma proteobacterium HTCC2207] gi|90331452|gb|EAS46688.1| molybdenum cofactor biosynthesis protein A [marine gamma proteobacterium HTCC2207] Length = 336 Score = 38.5 bits (89), Expect = 0.68, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 7/87 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + + T + + L +L + E R LTGGEPL++ D Sbjct: 29 DRCNLRCTYC----MAEEMTFLPKQQILSLEELRDAATAFVELGIRKIRLTGGEPLIRRD 84 Query: 101 -VPLIQALNKR-GF-EIAVETNGTIEP 124 + L+ +L+ G E+ + TNG + P Sbjct: 85 ILKLVSSLSALPGLDELTMTTNGLLLP 111 >gi|254421688|ref|ZP_05035406.1| radical SAM domain protein [Synechococcus sp. PCC 7335] gi|196189177|gb|EDX84141.1| radical SAM domain protein [Synechococcus sp. PCC 7335] Length = 423 Score = 38.5 bits (89), Expect = 0.68, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 15/125 (12%) Query: 47 CRFC-DTDFVGIQGTKGGRYNVDQLADLIEE--QWITGEKEGRYCVLTGGEPLLQVDV-P 102 C FC D I K G ++D L ++E Q+ + + + GEPL+ + Sbjct: 79 CEFCPD----AIMERKRGHMDIDLLEKALDEIAQYDLAKIVAFHLM---GEPLIYPHIFE 131 Query: 103 LIQALNKRGFEIAVETNGT--IEPPQGIDWICVS--PKAGCDLKIKGGQELKLVFPQVNV 158 I+ R + + TNG+ P+ I+ + S PK L+ + N+ Sbjct: 132 AIEMAIARQLNLHLTTNGSTFHIRPEHIEKLVASGIPKVTISLQTPDPDTFIIRGAPPNL 191 Query: 159 SPENY 163 PE Y Sbjct: 192 KPEQY 196 >gi|262199661|ref|YP_003270870.1| radical SAM protein [Haliangium ochraceum DSM 14365] gi|262083008|gb|ACY18977.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365] Length = 366 Score = 38.5 bits (89), Expect = 0.69, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 62/174 (35%), Gaps = 30/174 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C + +G + G + +++ ++++ G ++ + T Sbjct: 40 CNLRCFM--------CEY-------WKGRRRGELSTEEVTRVLDDLRALGCEKVHF---T 81 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 GGE ++ D + L+ G + TNGT+ + I KA ++ ++ L Sbjct: 82 GGELFMRRDVLTLVAHAADLGMRTNLTTNGTLLTRETI-------KALLEIPVRSVT-LS 133 Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE--NTNLAISYCFQNPKWRLSV 202 + P + + + +D T + ++ +R S+ Sbjct: 134 IDAPVARIHDTVRGKKGAHHKTTRSIDRLLRWRKSKTRVRVNTVLSRKNYR-SL 186 >gi|225569142|ref|ZP_03778167.1| hypothetical protein CLOHYLEM_05222 [Clostridium hylemonae DSM 15053] gi|225161941|gb|EEG74560.1| hypothetical protein CLOHYLEM_05222 [Clostridium hylemonae DSM 15053] Length = 302 Score = 38.5 bits (89), Expect = 0.69, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 4/83 (4%) Query: 42 RLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 +L C C D+ + ++ G Y V +L + + + E+ G L+GGE ++ Sbjct: 80 KLCTGCGTCVDSCNLNLREVAGKEYTVSELVKELRKDEMFYEESGGGVTLSGGEVMMADM 139 Query: 101 ---VPLIQALNKRGFEIAVETNG 120 L++ L++ G +A++T G Sbjct: 140 DYVEELVKRLDRMGISVAIDTCG 162 >gi|182680062|ref|YP_001834208.1| hopanoid biosynthesis associated radical SAM protein HpnH [Beijerinckia indica subsp. indica ATCC 9039] gi|182635945|gb|ACB96719.1| hopanoid biosynthesis associated radical SAM protein HpnH [Beijerinckia indica subsp. indica ATCC 9039] Length = 382 Score = 38.5 bits (89), Expect = 0.69, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 19/89 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C R +++ ++E V+ Sbjct: 38 CNLAC--------AGCG----KIDYPDEILNQRLSLEDSLAAVDECG------APVVVIA 79 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETN 119 GGEPLL D+P +++ +G + V TN Sbjct: 80 GGEPLLHRDLPAIVEGAMAKGKYVTVCTN 108 >gi|116512687|ref|YP_811594.1| pyruvate-formate lyase activating enzyme [Lactococcus lactis subsp. cremoris SK11] gi|125624774|ref|YP_001033257.1| pyruvate-formate lyase activating enzyme [Lactococcus lactis subsp. cremoris MG1363] gi|116108341|gb|ABJ73481.1| Pyruvate-formate lyase-activating enzyme [Lactococcus lactis subsp. cremoris SK11] gi|124493582|emb|CAL98567.1| pyruvate-formate lyase activating enzyme [Lactococcus lactis subsp. cremoris MG1363] gi|300071574|gb|ADJ60974.1| pyruvate formate-lyase activating enzyme [Lactococcus lactis subsp. cremoris NZ9000] Length = 263 Score = 38.5 bits (89), Expect = 0.69, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 34/122 (27%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +C++C DT ++ Sbjct: 18 TESFGSVDGPG---------VRFIIFMQGC-----------RMRCKYCHNPDT--WALKS 55 Query: 60 TKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAV 116 K + V+ + D GEK G ++GGE LLQ+D + L + G + Sbjct: 56 DKATKRTVEDVMDEALRFRGFWGEKGG--ITVSGGEALLQIDFVLALFKYAKSLGIHTTL 113 Query: 117 ET 118 +T Sbjct: 114 DT 115 >gi|70725785|ref|YP_252699.1| hypothetical protein SH0784 [Staphylococcus haemolyticus JCSC1435] gi|82592973|sp|Q4L8D2|MOAA_STAHJ RecName: Full=Molybdenum cofactor biosynthesis protein A gi|68446509|dbj|BAE04093.1| moaA [Staphylococcus haemolyticus JCSC1435] Length = 340 Score = 38.5 bits (89), Expect = 0.69, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 22/93 (23%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D D+V + K +++ + + G K+ R +TGG Sbjct: 22 DRCNFRCDYCMPKEIFGD-DYVFL--PKDELLTFEEMVRIAKVYAELGVKKLR---ITGG 75 Query: 94 EPLLQVDV-PLIQALNKRGFEIAVE-----TNG 120 EPLL+ ++ LI LN+ +E TNG Sbjct: 76 EPLLRRNLYQLIAELNQID---GIEDIGMTTNG 105 >gi|255525534|ref|ZP_05392470.1| glycyl-radical enzyme activating protein family [Clostridium carboxidivorans P7] gi|255510802|gb|EET87106.1| glycyl-radical enzyme activating protein family [Clostridium carboxidivorans P7] Length = 312 Score = 38.1 bits (88), Expect = 0.69, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 57/150 (38%) Query: 24 AVFCRFSGCNL---WSGREQDRLSAQ--------CRF----------C--DTDFVGIQGT 60 +VF F+GC L W + + + C++ C D+ G Sbjct: 24 SVF--FTGCPLQCKWCANPESWIKKKHIMVAENVCKWKNGCRACINVCSHDSIKFSEDGK 81 Query: 61 KG---------------------------GRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 G Y VD+L +++ + +G TGG Sbjct: 82 LGISWDTCEECETFDCVNICPNNALKQCVKEYTVDELMTILKRDFNNWGSDGG-VTFTGG 140 Query: 94 EPLLQVDVPLIQALN---KRGFEIAVETNG 120 +PL+ + L++ L A+ET+G Sbjct: 141 DPLMHHEF-LVEVLKKCYDSQIHKAIETSG 169 >gi|302874064|ref|YP_003842697.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|307689682|ref|ZP_07632128.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|302576921|gb|ADL50933.1| Radical SAM domain protein [Clostridium cellulovorans 743B] Length = 298 Score = 38.1 bits (88), Expect = 0.69, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 47/165 (28%), Gaps = 57/165 (34%) Query: 22 RVAVFCRFSGCNL---WSGREQDRLS--------AQCRFC-------------------- 50 R+ VF GCN+ W +C C Sbjct: 21 RLVVF--LQGCNVKCKWCHSPHSWRKYSPVLLNKERCSLCGNCESVCENDVHRISNGIHT 78 Query: 51 -----------------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY--CVLT 91 D+ +G Q++ L + + + L+ Sbjct: 79 LHIENCVSCGKCIEACMDSSLSSKKGPLFLPTIELQVSKLFSLIYPQLKLLKKIGGITLS 138 Query: 92 GGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134 GGE LLQ L++ + G AVE++G + ++ VS Sbjct: 139 GGEALLQHKAARELLKLCKEEGIHTAVESSGFLPLE---NYKSVS 180 >gi|237746020|ref|ZP_04576500.1| molybdenum cofactor biosynthesis protein A [Oxalobacter formigenes HOxBLS] gi|229377371|gb|EEO27462.1| molybdenum cofactor biosynthesis protein A [Oxalobacter formigenes HOxBLS] Length = 370 Score = 38.1 bits (88), Expect = 0.69, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 29/151 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D F+ + +++A + G ++ R LTG Sbjct: 50 DRCNFRCVYCMPKQVFGKDFRFI----PHADMLSFEEIARIARLFVSLGVEKIR---LTG 102 Query: 93 GEPLLQVDVP-LIQALNKR----GFEI--AVETNGTIEP-------PQGIDWICVSPKAG 138 GEPLL+ V L+ L G + + TNG++ G+ I VS A Sbjct: 103 GEPLLRKHVEKLVAQLAGLKTPDGRRVDLTLTTNGSMLAKKAQSLFDAGLRRITVSLDAL 162 Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169 D + ++ V E + F Sbjct: 163 DDPVFRKMNDVGFRVADVLDGIETALSAGFS 193 >gi|242278349|ref|YP_002990478.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638] gi|242121243|gb|ACS78939.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638] Length = 349 Score = 38.1 bits (88), Expect = 0.69, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 14/110 (12%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG- 92 L ++ + C FC + ++ + + + L D I + G K Y +G Sbjct: 31 LIEISPTNKCNHGCLFC--AYDYLERKEPRFIDTEILYDNIYQLQNLGTKALFY---SGE 85 Query: 93 GEPLLQVDVP-LIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134 GEPLL +P ++ ++ + A+ TNG++ + + WI VS Sbjct: 86 GEPLLHKGLPNFVEKISYLQLDQALNTNGSLLKGRCMEQILPHMSWIRVS 135 >gi|20092131|ref|NP_618206.1| arylsulfatase regulator [Methanosarcina acetivorans C2A] gi|19917353|gb|AAM06686.1| arylsulfatase regulator [Methanosarcina acetivorans C2A] Length = 380 Score = 38.1 bits (88), Expect = 0.69, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 28/98 (28%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GC A C +C K +++ + +++E Sbjct: 12 GCP-----------ANCNYC-----WSSEEKSPIMSIETIKEVVE---WLKVFRQDSVTF 52 Query: 91 T--GGEPLLQ------VDVPLI-QALNKRGFEIAVETN 119 T GGEPLL +PL+ + L+ R A++TN Sbjct: 53 TFHGGEPLLAGVDFYREALPLLAEGLSPRNIAFAIQTN 90 >gi|313902877|ref|ZP_07836273.1| Radical SAM domain protein [Thermaerobacter subterraneus DSM 13965] gi|313466812|gb|EFR62330.1| Radical SAM domain protein [Thermaerobacter subterraneus DSM 13965] Length = 479 Score = 38.1 bits (88), Expect = 0.70, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 11/91 (12%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG-EPLLQVD 100 R + +C FC DF + + + + ++ + +E G + GG EP L D Sbjct: 133 RCNQRCSFCFLDFGLMAQQEKRKLSCEEWLAITDELIHAGVN----VINIGGMEPFL--D 186 Query: 101 VPL-IQALNKR---GFEIAVETNGTIEPPQG 127 + L I L K G + V TNG+I Sbjct: 187 IELTISILEKAYENGCIVGVITNGSISLSSE 217 >gi|304315862|ref|YP_003851007.1| radical SAM protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777364|gb|ADL67923.1| Radical SAM domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 452 Score = 38.1 bits (88), Expect = 0.70, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 19/107 (17%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCN C +C + + R VD D I E + GEK Y L Sbjct: 100 GCNF-----------SCIYCYERGIPTKKDLITREAVDAFFDDINE-RLKGEKVKPYITL 147 Query: 91 TGGEPLLQVDVP------LIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GGEP + DV +++ + G+EIA TNG + ID + Sbjct: 148 FGGEPFIDTDVQKEIIDYIVEKSKEYGYEIAAVTNG-YNLLEYIDIL 193 >gi|114327751|ref|YP_744908.1| lysine 2,3-aminomutase [Granulibacter bethesdensis CGDNIH1] gi|114315925|gb|ABI61985.1| lysine 2,3-aminomutase [Granulibacter bethesdensis CGDNIH1] Length = 362 Score = 38.1 bits (88), Expect = 0.70, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 6/52 (11%) Query: 47 CRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 CRFC F G GG + +QL I W+ G + R +LTGG+PL+ Sbjct: 124 CRFC---FRREHVGPDGGVLSEEQL--RIALDWLAGHPQIREVILTGGDPLM 170 >gi|319443027|ref|ZP_07992183.1| molybdenum cofactor biosynthesis protein A [Corynebacterium variabile DSM 44702] Length = 371 Score = 38.1 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 16/97 (16%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE----KEGRYCVLTGGEPL 96 D+ + +C +C + D+L E I R TGGEPL Sbjct: 49 DKCNLRCTYC------MPAEGMAWLQKDRLLTAEEAVRIADLGVRIFGVRDVRFTGGEPL 102 Query: 97 ----LQVDVPLIQALNKRGFEIAVETNGTIEPPQGID 129 L + ++ L+ I++ TNG I + ID Sbjct: 103 VRHDLADIIAGVRRLHPE-IPISITTNG-IGLDKRID 137 >gi|290473883|ref|YP_003466757.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus bovienii SS-2004] gi|289173190|emb|CBJ79963.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus bovienii SS-2004] Length = 246 Score = 38.1 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 56/184 (30%), Gaps = 44/184 (23%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF F GC +C +C DT G V++L Sbjct: 25 VF--FQGC-----------LMRCLYCHNRDT----WNTHGGTTVTVEELIKEATTYRHFM 67 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134 G +GGE +LQ + +A + ++TNG + + +D Sbjct: 68 NASGGGVTASGGEAILQAEFVRDWFRACHAENIHTCLDTNGFVRRYDLIIDELLD----- 122 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 DL + ++L Q + N+ +F + + N I Y Sbjct: 123 ---DTDLVMLDLKQLDDEIHQKLIGVSNHRTLEFAHY--------LAKLNQKTWIRYVVV 171 Query: 195 NPKW 198 P W Sbjct: 172 -PGW 174 >gi|210621731|ref|ZP_03292780.1| hypothetical protein CLOHIR_00725 [Clostridium hiranonis DSM 13275] gi|210154613|gb|EEA85619.1| hypothetical protein CLOHIR_00725 [Clostridium hiranonis DSM 13275] Length = 303 Score = 38.1 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 7/81 (8%) Query: 47 CRFCDT--DFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101 C C T D+ + G Y V +L LIE+ + E+ G L+GGE ++Q Sbjct: 83 CELCSTCLDYCVNNAREIVGDEYTVKELLKLIEKDRMFYEESGGGVTLSGGEVMVQDIDF 142 Query: 102 --PLIQALNKRGFEIAVETNG 120 L + +G ++A++T G Sbjct: 143 ICELARGCRNKGIDVAIDTCG 163 >gi|18978436|ref|NP_579793.1| arylsulfatase regulatory protein, putative [Pyrococcus furiosus DSM 3638] gi|18894280|gb|AAL82188.1| arylsulfatase regulatory protein, putative [Pyrococcus furiosus DSM 3638] Length = 472 Score = 38.1 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 51/168 (30%), Gaps = 41/168 (24%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN---VDQLADLIEEQWITGEKEGRYC 88 CNL +C +C + G +KGG ++ + +K Sbjct: 99 CNL-----------RCPYC---YEGDIKSKGGLLTREKIETILTFASAHAQGDKKPTISV 144 Query: 89 VLTGGEPL---------LQVDVPLIQALNKRGFEIAVETNGTIEPPQGID---------- 129 GGEPL LQ + + R + TNGT+ +D Sbjct: 145 SFYGGEPLLNWKGCEYTLQRLEEMKENKEIRDYSAGFVTNGTLINEDIVDAINNYNVYSM 204 Query: 130 WICVS-PKAGCD---LKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173 I + PK D +K G + + + +F +L Sbjct: 205 QITLDGPKEIHDKRRIKSNGEGTFDQIIENIKLLNRRIANKNF-HLAL 251 >gi|154685272|ref|YP_001420433.1| YfkA [Bacillus amyloliquefaciens FZB42] gi|154351123|gb|ABS73202.1| YfkA [Bacillus amyloliquefaciens FZB42] Length = 373 Score = 38.1 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L ++E + R +TGGEP+L + Sbjct: 45 RCEHCAVGYT-LQPKDPNALPIDLLLKRLDEIPLL-----RSISITGGEPMLSLKSVKEY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 VPL++ ++RG + +N T++ Sbjct: 99 VVPLLKYAHERGVRTQINSNLTLDI 123 >gi|21229386|ref|NP_635308.1| transcriptional regulator [Methanosarcina mazei Go1] gi|20907976|gb|AAM32980.1| transcriptional regulator [Methanosarcina mazei Go1] Length = 379 Score = 38.1 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 28/98 (28%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GC A C +C K +++ + +++E Sbjct: 12 GCP-----------ANCNYC-----WSSEEKSPIMSIETIKEVVE---WLKIFRQDSVTF 52 Query: 91 T--GGEPLLQ------VDVPLI-QALNKRGFEIAVETN 119 T GGEPLL +PL+ + L+ R A++TN Sbjct: 53 TFHGGEPLLAGEKFYREALPLLAEGLSPRNIAFAIQTN 90 >gi|312879492|ref|ZP_07739292.1| glycyl-radical enzyme activating protein family [Aminomonas paucivorans DSM 12260] gi|310782783|gb|EFQ23181.1| glycyl-radical enzyme activating protein family [Aminomonas paucivorans DSM 12260] Length = 301 Score = 38.1 bits (88), Expect = 0.72, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119 G V +L + + ++ G +GGEPL+Q + L ++A GF AV+T Sbjct: 103 GRTLTVPELVAEARKDELFYDQSGGGVTFSGGEPLMQPEFLLEVLEACGAAGFHRAVDTC 162 Query: 120 GTIEPPQGI 128 G P + I Sbjct: 163 G-FAPEETI 170 >gi|213027682|ref|ZP_03342129.1| hypothetical protein Salmonelentericaenterica_37148 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 102 Score = 38.1 bits (88), Expect = 0.72, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 9/80 (11%) Query: 46 QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101 +C +C DT G V+ L + G +GGE +LQ + Sbjct: 2 RCLYCHNRDT----WDTHGGKEITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFV 57 Query: 102 -PLIQALNKRGFEIAVETNG 120 +A K G ++TNG Sbjct: 58 RDWFRACKKEGIHTCLDTNG 77 >gi|258545316|ref|ZP_05705550.1| molybdenum cofactor biosynthesis protein A [Cardiobacterium hominis ATCC 15826] gi|258519419|gb|EEV88278.1| molybdenum cofactor biosynthesis protein A [Cardiobacterium hominis ATCC 15826] Length = 323 Score = 38.1 bits (88), Expect = 0.72, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 61/173 (35%), Gaps = 28/173 (16%) Query: 41 DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 D + +C +C G +G G + LA++ LTGGEP L+ Sbjct: 19 DFCNYRCVYC-----LPDGYQGCGSADELSLAEIRTLVAAFAACGTEKIRLTGGEPTLRA 73 Query: 100 DVPLIQALNKR--GFE-IAVETNGTI-------EPPQGIDWICV---SPKAGCDLKIKGG 146 D+ I + G + +A+ TNG G+D I + S +A ++ G Sbjct: 74 DIADIIRICASTPGIQKVALTTNGHRLAEHYPALLDAGLDQINLSVDSFRAATFQRLTGK 133 Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL---AISYCFQNP 196 L P + + + + + L + T L ++Y P Sbjct: 134 NHL----PALLATIDALLARGYHHLKL--NALLMRDSATELYEDTLAYLKTRP 180 >gi|240172941|ref|ZP_04751599.1| radical SAM domain-containing protein [Mycobacterium kansasii ATCC 12478] Length = 514 Score = 38.1 bits (88), Expect = 0.72, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 16/91 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C F + + ++++ +L+ Sbjct: 122 CNL-----------RCPTC---FADSSPDLRHVVAIGDVLANVDQRLERENGRLDVLMLS 167 Query: 92 GGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120 GGEP L +P L+ L+ R I + TNG Sbjct: 168 GGEPSLHPQLPELLAELSARPITRILLNTNG 198 >gi|239635993|ref|ZP_04677010.1| molybdenum cofactor biosynthesis protein A [Staphylococcus warneri L37603] gi|239598458|gb|EEQ80938.1| molybdenum cofactor biosynthesis protein A [Staphylococcus warneri L37603] Length = 341 Score = 38.1 bits (88), Expect = 0.72, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 4/84 (4%) Query: 41 DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C + G + + +++ + + + +TGGEPLL+ Sbjct: 23 DRCNFRCDYCMPKEIFGDDFVFLPKEELLTFEEMVRISKLYAQLGVKKIRITGGEPLLRR 82 Query: 100 DV-PLIQALNKR-GFE-IAVETNG 120 ++ LI+ LN+ G E I + TNG Sbjct: 83 NLYQLIEQLNQIDGIEDIGLTTNG 106 >gi|256423142|ref|YP_003123795.1| molybdenum cofactor biosynthesis protein A [Chitinophaga pinensis DSM 2588] gi|256038050|gb|ACU61594.1| molybdenum cofactor biosynthesis protein A [Chitinophaga pinensis DSM 2588] Length = 326 Score = 38.1 bits (88), Expect = 0.72, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 15/91 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C T R + Q ++ I R LT Sbjct: 21 CNL-----------RCFYC-MPEEDYDFTPASR--LMQADEIATLAGIFTANGVRKIRLT 66 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 GGEPL++ D +I +L++ E+ + TNG Sbjct: 67 GGEPLVRKDAAKIILSLSRLPVELTMTTNGA 97 >gi|226940140|ref|YP_002795213.1| MoaA2 [Laribacter hongkongensis HLHK9] gi|226715066|gb|ACO74204.1| MoaA2 [Laribacter hongkongensis HLHK9] Length = 324 Score = 38.1 bits (88), Expect = 0.72, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 13/62 (20%) Query: 41 DRLSAQCRFCDTDFVGIQGTKG-----GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 DR +C +C +G KG D+++ ++ G + R LTGGEP Sbjct: 19 DRCDLRCTYC-----LPKGFKGFEEPRNWLTFDEISRVVAAFGRMGTRRIR---LTGGEP 70 Query: 96 LL 97 LL Sbjct: 71 LL 72 >gi|296109325|ref|YP_003616274.1| molybdenum cofactor biosynthesis protein A [Methanocaldococcus infernus ME] gi|295434139|gb|ADG13310.1| molybdenum cofactor biosynthesis protein A [Methanocaldococcus infernus ME] Length = 294 Score = 38.1 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 26/112 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + + +++ G ++ ++ Sbjct: 20 CNL-----------RCFYC---HKEGHKSSERYLTPEDFEKIVKTAMKFGIEK---VKIS 62 Query: 92 GGEPLLQVDV-PLIQALNKRGFE-IAVETNGTIEPP-------QGIDWICVS 134 GGEPLL+ D+ +++ + G + +++ TNGT+ G+D I +S Sbjct: 63 GGEPLLREDIVEIVRRIKNLGIKDLSLTTNGTLLKDLAYELKEAGLDRINIS 114 >gi|227824433|ref|ZP_03989265.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226904932|gb|EEH90850.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 379 Score = 38.1 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 10/87 (11%) Query: 47 CRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 C +CD + G G RY + ++ G + GG P L L Sbjct: 21 CSYCDFISYQGQDGAARARYVKALIREIRSYDAPLPVSRGATVYVGGGTPSLLSLEELAA 80 Query: 106 ---ALNKRGF-----EIAVETN-GTIE 123 AL ++G+ E+ E N GT++ Sbjct: 81 IFHALKEKGYLHSPREVTFEANPGTVD 107 >gi|121535158|ref|ZP_01666974.1| molybdenum cofactor biosynthesis protein A [Thermosinus carboxydivorans Nor1] gi|121306267|gb|EAX47193.1| molybdenum cofactor biosynthesis protein A [Thermosinus carboxydivorans Nor1] Length = 324 Score = 38.1 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 8/93 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C + G K ++ +++ + + LTGGEPL++ Sbjct: 18 DRCNFRCAYC----MPPDGVKLLDHADILAYEEILYLIKVFNKYGVNKIRLTGGEPLVRK 73 Query: 100 DV-PLIQALNKRGF--EIAVETNGTIEPPQGID 129 + I+AL+ G ++++ TNG++ D Sbjct: 74 GIVDFIRALSSLGIIDDLSLTTNGSLLADMAED 106 >gi|189347396|ref|YP_001943925.1| Radical SAM domain protein [Chlorobium limicola DSM 245] gi|189341543|gb|ACD90946.1| Radical SAM domain protein [Chlorobium limicola DSM 245] Length = 376 Score = 38.1 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 36/113 (31%), Gaps = 26/113 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR C + + E E VL Sbjct: 21 CNL-----------RCRHC--YYYSSDAETPTELETAEWLRFFREL---NECSVLRVVLA 64 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGT---------IEPPQGIDWICVS 134 GGEP ++ D LI + K + +NGT + + D++ VS Sbjct: 65 GGEPFMREDFRELIDGIVKNRMRFGILSNGTLVTDAIASFLAATRRCDYVQVS 117 >gi|291531854|emb|CBK97439.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Eubacterium siraeum 70/3] Length = 457 Score = 38.1 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 29/113 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-----NVDQLADLIEEQWITGEKEGR 86 CNL +C++C F G R + D + + + +E Sbjct: 107 CNL-----------RCKYC---FAQTGDFGGDRMLMKPETGKRAMDFLIKH--SANRENL 150 Query: 87 YCVLTGGEPLLQVDVPL--------IQALNKRGFEIAVETNGTIEPPQGIDWI 131 GGEPL+ D + I+ + + F + TNG + + ID+I Sbjct: 151 EVDFFGGEPLMAWDTVVETVKYARSIEKQHGKNFRFTITTNGMLLDDEKIDYI 203 >gi|73668723|ref|YP_304738.1| molybdenum cofactor biosynthesis protein A [Methanosarcina barkeri str. Fusaro] gi|72395885|gb|AAZ70158.1| GTP cyclohydrolase subunit MoaA [Methanosarcina barkeri str. Fusaro] Length = 332 Score = 38.1 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 21/111 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + A C C G G + + +I+E G + ++ + Sbjct: 40 CNLSCMYCHN-EGADCCTC--------GPIGHEMKPELICGIIKEAEKFGVNKIKF---S 87 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134 GGEPL + D I A E++ TNG T++ G+D + VS Sbjct: 88 GGEPLFRKDFEEILACLPPLKEVSATTNGILLEKRARTLKA-AGLDRVNVS 137 >gi|219667305|ref|YP_002457740.1| glycyl-radical enzyme activating protein family [Desulfitobacterium hafniense DCB-2] gi|219537565|gb|ACL19304.1| glycyl-radical enzyme activating protein family [Desulfitobacterium hafniense DCB-2] Length = 299 Score = 38.1 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 10/101 (9%) Query: 30 SGCN--LWSGREQDRLSAQ--CRFCDTDFVGIQGTK----GGRYNVDQLADLIEEQWITG 81 + C ++ RE + C FC T G + D++ ++I + Sbjct: 62 AKCPQQVFEIREGKLDITRQKCDFCGICVRECSTTSLEISGENPDFDKIMEIILQDKSYY 121 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 + G L+GGE L ++ L AVET+G Sbjct: 122 DMSGGGVTLSGGEALAHRAFCRKILTLLKTENIHTAVETSG 162 >gi|189346542|ref|YP_001943071.1| Radical SAM domain protein [Chlorobium limicola DSM 245] gi|189340689|gb|ACD90092.1| Radical SAM domain protein [Chlorobium limicola DSM 245] Length = 345 Score = 38.1 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 23/94 (24%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR+C + G + + G ++D ++ G + T Sbjct: 17 CNL-----------SCRYC---YEGGRRS-GEFMSLDTALCALDVAARRG--RPFHVQFT 59 Query: 92 GGEPLLQVD-----VPLIQALNKRGFEIAVETNG 120 GGEPLL D + I A A++TNG Sbjct: 60 GGEPLLAADLVFAVLEHIAA-EALPATTAIQTNG 92 >gi|158333639|ref|YP_001514811.1| pyruvate formate-lyase activating enzyme [Acaryochloris marina MBIC11017] gi|158303880|gb|ABW25497.1| pyruvate formate-lyase activating enzyme [Acaryochloris marina MBIC11017] Length = 270 Score = 38.1 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 44/129 (34%), Gaps = 33/129 (25%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC L +C +C D T G V+ L I+ Sbjct: 52 VFM--QGCPL-----------RCLYCHNPD----CRDVTGGQVTTVEALIAEIQRYRSYM 94 Query: 82 EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQG-----------I 128 + G ++GGEPLLQ + L++ G A++T+G + + Sbjct: 95 QASGGGVTVSGGEPLLQPEFVAELMRQCQALGIHTALDTSGFSDLTSAQRVLQYTDLVLL 154 Query: 129 DWICVSPKA 137 D PK Sbjct: 155 DIKSYDPKR 163 >gi|148264594|ref|YP_001231300.1| radical SAM domain-containing protein [Geobacter uraniireducens Rf4] gi|146398094|gb|ABQ26727.1| Radical SAM domain protein [Geobacter uraniireducens Rf4] Length = 216 Score = 38.1 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 16/94 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 + CN+ G C C + KG + +A+++ + ++ Sbjct: 6 TTKCNMRCGHC-------CYAC-------EPGKGEHMPFEVIAEVLARWGKKILDDNQWI 51 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 V+ GGEP L D +I G + V TNG+ Sbjct: 52 VIGGGEPTLHPDFWKIISHALSYG-PVWVATNGS 84 >gi|317490229|ref|ZP_07948717.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Eggerthella sp. 1_3_56FAA] gi|316910723|gb|EFV32344.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Eggerthella sp. 1_3_56FAA] Length = 181 Score = 38.1 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 19/75 (25%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 AVF GC S C C V +AD++ E Sbjct: 26 AVFV--QGC-----------SHGCPGC----HNPDSQPCAGGTVRAIADVVAEIAANKLV 68 Query: 84 EGRYCVLTGGEPLLQ 98 +G ++GGEP Q Sbjct: 69 QG--VTISGGEPFEQ 81 >gi|291532371|emb|CBL05484.1| Pyruvate-formate lyase-activating enzyme [Megamonas hypermegale ART12/1] Length = 136 Score = 38.1 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 32/103 (31%), Gaps = 24/103 (23%) Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI 74 GEG R +F GC C C G + D L I Sbjct: 17 GEGF---RFTIF--TQGC-----------YHNCPQCHNPQT-HDVNGGHEVDTDDLLSQI 59 Query: 75 EEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115 E + +GGEP LQ L + ++KRG I Sbjct: 60 CENPLLNG-----VTFSGGEPFLQAKPLAQLAKEVHKRGLNIT 97 >gi|264677776|ref|YP_003277682.1| molybdenum cofactor biosynthesis protein A [Comamonas testosteroni CNB-2] gi|262208288|gb|ACY32386.1| molybdenum cofactor biosynthesis protein A [Comamonas testosteroni CNB-2] Length = 342 Score = 38.1 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 54/153 (35%), Gaps = 25/153 (16%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D ++ + + ++ ++ + R LTGGE Sbjct: 10 DRCNFRCNYCMPKEVFDKNYQYLPHS-----SLLSFEEITRLARLFVAHGVRKLRLTGGE 64 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ ++ LI L + + ++ + TN ++ G++ + VS D Sbjct: 65 PLLRKNIEALIAQLAELRTPDGQPLDLTLTTNASLLARKARALKEAGLNRVTVSLDGLDD 124 Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173 + ++ V E + Sbjct: 125 AVFRRMNDVDFPVTDVLAGIEAAQTAGLSHIKV 157 >gi|222445702|ref|ZP_03608217.1| hypothetical protein METSMIALI_01343 [Methanobrevibacter smithii DSM 2375] gi|261349749|ref|ZP_05975166.1| putative molybdenum cofactor biosynthesis protein A [Methanobrevibacter smithii DSM 2374] gi|222435267|gb|EEE42432.1| hypothetical protein METSMIALI_01343 [Methanobrevibacter smithii DSM 2375] gi|288861704|gb|EFC94002.1| putative molybdenum cofactor biosynthesis protein A [Methanobrevibacter smithii DSM 2374] Length = 309 Score = 38.1 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 8/87 (9%) Query: 38 REQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 ++ + C +C N D++ + E G ++ R ++GGEPL+ Sbjct: 20 TITNKCNENCLYC---HHDGMDDSQEEMNADEIYRICEIAKNIGVRKIR---ISGGEPLI 73 Query: 98 QVDV-PLIQALNKRGF-EIAVETNGTI 122 + D+ ++ + F +I++ +NGT+ Sbjct: 74 RKDIVEIVSKIASLDFDDISITSNGTL 100 >gi|254167443|ref|ZP_04874295.1| radical SAM domain protein [Aciduliprofundum boonei T469] gi|197623706|gb|EDY36269.1| radical SAM domain protein [Aciduliprofundum boonei T469] Length = 496 Score = 38.1 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 29/134 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDF-VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL T + + T +Y Q+ D ++E + Sbjct: 126 CNLKCKHCYANA--------TPYPAPDELTLEQKY---QVVDQLDEAGVAA------ISF 168 Query: 91 TGGEPLLQVDVPLIQA-LNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 +GGEPL D + +GF + V TNGT+ +S K LK G + Sbjct: 169 SGGEPLTNKDFLKVARYAKSKGFYLTVATNGTL----------ISEKMARKLKEVGIGYV 218 Query: 150 KLVFPQVNVSPENY 163 ++ N + Sbjct: 219 EISLDGPNAEIHDE 232 >gi|291446592|ref|ZP_06585982.1| heme d1 biosynthesis protein NirJ [Streptomyces roseosporus NRRL 15998] gi|291349539|gb|EFE76443.1| heme d1 biosynthesis protein NirJ [Streptomyces roseosporus NRRL 15998] Length = 329 Score = 38.1 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 7/76 (9%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI-- 104 C C F G + + VD+ ADL+ + + L GGEP + ++ + Sbjct: 55 CLHC---FHGKRLQYADAFTVDEAADLL--TLMRDQYGTAAVTLLGGEPFVHRNLAQVVR 109 Query: 105 QALNKRGFEIAVETNG 120 A + G + + TNG Sbjct: 110 HAKEELGLRVEICTNG 125 >gi|260887738|ref|ZP_05899001.1| glutamate 5-kinase [Selenomonas sputigena ATCC 35185] gi|260862525|gb|EEX77025.1| glutamate 5-kinase [Selenomonas sputigena ATCC 35185] Length = 250 Score = 38.1 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 22/101 (21%) Query: 31 GCNLWSGREQDRLSAQCRFCD--TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCNL +C FC T + ++ +LA L + Sbjct: 44 GCNL-----------RCPFCQNYTISMTDGQSETQDVTPAELAALAHDL-SRRPHGNIGV 91 Query: 89 VLTGGEPLLQ-----VDVPLIQALNKRGFEIAVETNGTIEP 124 T EPLL PL L++ G + + TNGTI P Sbjct: 92 AFTYNEPLLSYEFIMDVAPL---LHEAGLFVVLVTNGTIAP 129 >gi|258541496|ref|YP_003186929.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO 3283-01] gi|329115088|ref|ZP_08243843.1| Hopanoid Biosynthesis Associated Radical SAM Protein HpnH [Acetobacter pomorum DM001] gi|256632574|dbj|BAH98549.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO 3283-01] gi|256635631|dbj|BAI01600.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO 3283-03] gi|256638686|dbj|BAI04648.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO 3283-07] gi|256641740|dbj|BAI07695.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO 3283-22] gi|256644795|dbj|BAI10743.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO 3283-26] gi|256647850|dbj|BAI13791.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO 3283-32] gi|256650903|dbj|BAI16837.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653894|dbj|BAI19821.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO 3283-12] gi|326695531|gb|EGE47217.1| Hopanoid Biosynthesis Associated Radical SAM Protein HpnH [Acetobacter pomorum DM001] Length = 403 Score = 38.1 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 81 GEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139 E + GGEPLL ++P +I+ L R + + TN + + +D SP Sbjct: 69 AEAGAPVVAVAGGEPLLHKEMPQIIRGLIARKKYVYLCTN-ALLLEKKMDEYEPSPFFSW 127 Query: 140 DLKIKG 145 D+ + G Sbjct: 128 DVHLDG 133 >gi|239943115|ref|ZP_04695052.1| radical SAM domain-containing protein [Streptomyces roseosporus NRRL 15998] gi|239989573|ref|ZP_04710237.1| radical SAM domain-containing protein [Streptomyces roseosporus NRRL 11379] Length = 300 Score = 38.1 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 7/76 (9%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI-- 104 C C F G + + VD+ ADL+ + + L GGEP + ++ + Sbjct: 26 CLHC---FHGKRLQYADAFTVDEAADLL--TLMRDQYGTAAVTLLGGEPFVHRNLAQVVR 80 Query: 105 QALNKRGFEIAVETNG 120 A + G + + TNG Sbjct: 81 HAKEELGLRVEICTNG 96 >gi|197118770|ref|YP_002139197.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase [Geobacter bemidjiensis Bem] gi|197088130|gb|ACH39401.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase [Geobacter bemidjiensis Bem] Length = 446 Score = 38.1 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 27/102 (26%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVL 90 CNL C +C + +GG Y D ADL+ E + + L Sbjct: 93 CNL-----------DCGYC-----YEREFRGGHYMSDATADLLVETLLRERISKEWDVTL 136 Query: 91 T--GGEPLLQVDV------PLIQALNKRG--FEIAVETNGTI 122 + GGEPLL D+ PL+Q G + + TNGT+ Sbjct: 137 SFYGGEPLLSQDLIRRISAPLLQGARNHGVRYGFNLVTNGTL 178 >gi|91203561|emb|CAJ71214.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 331 Score = 38.1 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 +TGGEPL+ ++ +I + K + + TNG Sbjct: 72 PTPVVTITGGEPLMHPEIDKIISGIIKEKRHVYLCTNG 109 >gi|229088329|ref|ZP_04220177.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock3-44] gi|228694989|gb|EEL48117.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock3-44] Length = 307 Score = 38.1 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 13/85 (15%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ ++P LI+ LNK G E I + Sbjct: 14 SNDKILSFDEIERVTRIFVSLGVRKLR---ITGGEPLLRKNLPELIERLNKIDGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVS 134 TNG++ D + VS Sbjct: 71 TTNGSLLKKFAPDLYKAGLSRVTVS 95 >gi|268592553|ref|ZP_06126774.1| organic radical activating enzyme family protein [Providencia rettgeri DSM 1131] gi|291311965|gb|EFE52418.1| organic radical activating enzyme family protein [Providencia rettgeri DSM 1131] Length = 210 Score = 38.1 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 33/104 (31%), Gaps = 35/104 (33%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC S +C+ C DT V K V QL D I E + Sbjct: 26 FQGC-----------SLRCKGCLSPDTWQV-----KDNSITVKQLLDQITEWLPFADG-- 67 Query: 86 RYCVLTGGEPLLQV--DVPL---IQALNKRGFEI-------AVE 117 ++GGEP Q L I+ L + +E Sbjct: 68 --ITISGGEPFEQPEALSALMKGIKQLKDADILVYSGYQWEHIE 109 >gi|222086226|ref|YP_002544758.1| molybdenum cofactor biosynthesis protein A [Agrobacterium radiobacter K84] gi|221723674|gb|ACM26830.1| molybdenum cofactor biosynthesis protein A [Agrobacterium radiobacter K84] Length = 355 Score = 38.1 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 14/89 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C K +++L L G ++ R LTGGEPL++ + Sbjct: 44 DRCDFRCTYC-MSENMTFLPKKDLLTLEELNRLCSAFIAKGVRKIR---LTGGEPLVRKN 99 Query: 101 VPLIQALNKRGFEIA---VE-----TNGT 121 + + + + G + +E TNG+ Sbjct: 100 IMFL--VRELGKRVHTGELEELTLTTNGS 126 >gi|209549618|ref|YP_002281535.1| molybdenum cofactor biosynthesis protein A [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226707377|sp|B5ZRM8|MOAA_RHILW RecName: Full=Molybdenum cofactor biosynthesis protein A gi|209535374|gb|ACI55309.1| molybdenum cofactor biosynthesis protein A [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 348 Score = 38.1 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C K +++L L G K+ R LTGGEPL++ + Sbjct: 38 DRCDFRCTYC-MAENMTFLPKKDLLTLEELDRLCSAFVAKGVKKIR---LTGGEPLVRKN 93 Query: 101 VP-LIQALNK---RGF-EIAVETNGT 121 + L++ L + G E+ + TNG+ Sbjct: 94 IMYLVRRLGEKIGAGLDEVTLTTNGS 119 >gi|148643466|ref|YP_001273979.1| molybdenum cofactor biosynthesis protein A [Methanobrevibacter smithii ATCC 35061] gi|89953725|gb|ABD83341.1| MoaA [Methanobrevibacter smithii] gi|148552483|gb|ABQ87611.1| molybdopterin cofactor biosynthesis protein A, MoaA [Methanobrevibacter smithii ATCC 35061] Length = 309 Score = 38.1 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 8/87 (9%) Query: 38 REQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 ++ + C +C N D++ + E G ++ R ++GGEPL+ Sbjct: 20 TITNKCNENCLYC---HHDGMDDSQEEMNADEIYRICEIAKNIGVRKIR---ISGGEPLI 73 Query: 98 QVDV-PLIQALNKRGF-EIAVETNGTI 122 + D+ ++ + F +I++ +NGT+ Sbjct: 74 RKDIVEIVSKIASLDFDDISITSNGTL 100 >gi|325279342|ref|YP_004251884.1| Radical SAM domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324311151|gb|ADY31704.1| Radical SAM domain protein [Odoribacter splanchnicus DSM 20712] Length = 355 Score = 38.1 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 14/99 (14%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR C +D I G + ++ + + + T Sbjct: 40 CNL-----------ACRHCGSDCKAISGQPD--MPKEDFLKALDNITPQVDPHRVFIIFT 86 Query: 92 GGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQGID 129 GGEPL++ D+ +A +R + + TNG + Q +D Sbjct: 87 GGEPLMRKDLEECGRACYRREYPWGLVTNGLLLSRQRLD 125 >gi|254787119|ref|YP_003074548.1| molybdenum cofactor biosynthesis protein A [Teredinibacter turnerae T7901] gi|237684680|gb|ACR11944.1| molybdenum cofactor biosynthesis protein A [Teredinibacter turnerae T7901] Length = 327 Score = 38.1 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 29/157 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN + CD+D ++ ++A + + G K+ R +T Sbjct: 26 CNFRCNYCLPDGYS----CDSD--------EPNLSIPEIAAVANAFALNGTKKIR---IT 70 Query: 92 GGEPLLQVDVPLIQALNK--RGFE-IAVETNG---TIEPP----QGIDWICVSPKAGCDL 141 GGEP L+ D+ I + K G E +A+ +NG T P G+D + +S + Sbjct: 71 GGEPTLRKDLAEIIHVCKTTPGIESVALTSNGYRITRLLPSLVDAGLDQLNLSADSLHPA 130 Query: 142 K---IKGGQELKLVFPQVNVSPENYI-GFDFERFSLQ 174 + I G +L+ V ++++ E + LQ Sbjct: 131 QFQLITGHDKLQEVLAGLDLALELGLSKVKLNVVLLQ 167 >gi|218885741|ref|YP_002435062.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756695|gb|ACL07594.1| Radical SAM domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 588 Score = 38.1 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVET 118 GG + +L + L+GGEP L+ D+P L+ A+ G+ + + T Sbjct: 167 PGGDPTLGELVARLAVLRPRAGDA--NIQLSGGEPTLRDDLPQLVTAVRGLGYPFVQLNT 224 Query: 119 NG 120 NG Sbjct: 225 NG 226 >gi|218778798|ref|YP_002430116.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01] gi|218760182|gb|ACL02648.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01] Length = 335 Score = 38.1 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 18/94 (19%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 + CNL CR C ++ + ++ + ++ G Sbjct: 19 LTQCNL-----------SCRHC---YINPEQHGRQTLDIKTICKWLDAFSAQGADS--NV 62 Query: 89 VLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNG 120 + GGEP + D+ I+ + G++ I V+TNG Sbjct: 63 IFLGGEPTMHPDLDQAIRHAHSTGYKSITVDTNG 96 >gi|120603171|ref|YP_967571.1| radical SAM domain-containing protein [Desulfovibrio vulgaris DP4] gi|120563400|gb|ABM29144.1| Radical SAM domain protein [Desulfovibrio vulgaris DP4] Length = 405 Score = 38.1 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 6/97 (6%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 C L + + C+ C G ++ D+ LI+ G + T Sbjct: 58 CKLIAWEVTRSCNLACKHC--RAEAHMEPYPGEFSTDEAKALIDTFPDVG---NPIIIFT 112 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127 GG+P+++ DV LI +G + NGT+ P+ Sbjct: 113 GGDPMMRGDVYELIAYATDKGLRCVMSPNGTLITPEH 149 >gi|226355448|ref|YP_002785188.1| molybdenum cofactor biosynthesis protein A [Deinococcus deserti VCD115] gi|226317438|gb|ACO45434.1| putative molybdenum cofactor biosynthesis protein A [Deinococcus deserti VCD115] Length = 337 Score = 38.1 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D FV + + +++ L I G ++ R LTG Sbjct: 23 DRCNLRCTYCMPASVFGPDYAFV----PRSELLSFEEIERLTRLFLILGVRKLR---LTG 75 Query: 93 GEPLLQVDV-PLIQALNK-RGFE-IAVETNGTIEP-------PQGIDWICVS 134 GEP L+ D+ LI L + G E +A+ TNG + P G+ + VS Sbjct: 76 GEPTLRRDLSDLIARLARLEGVEDLAMTTNGLLLPRLARELKSAGLRRVTVS 127 >gi|301059325|ref|ZP_07200252.1| radical SAM domain protein [delta proteobacterium NaphS2] gi|300446554|gb|EFK10392.1| radical SAM domain protein [delta proteobacterium NaphS2] Length = 375 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 17/100 (17%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL CR C V + + L ++I + +E L Sbjct: 31 GCNL-----------ACRHCWPQSVSGTESVASPVSTKTLKEIIRQWSRLDLEE---ICL 76 Query: 91 TGGEPLLQVD-VPLIQALNKRG--FEIAVETNGTIEPPQG 127 TGGEPL + +++ ++ + ++TN T+ P+ Sbjct: 77 TGGEPLTHPHWLEILRFACEQTEVKRVCLQTNATLLKPED 116 >gi|269125363|ref|YP_003298733.1| putative radical activating enzyme [Thermomonospora curvata DSM 43183] gi|268310321|gb|ACY96695.1| putative radical activating enzyme [Thermomonospora curvata DSM 43183] Length = 242 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 34/111 (30%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60 Y + TL G G AG GC + +C C DT + Sbjct: 13 YPVT----TL-GPGTRAGIWT-----QGC-----------TLRCPGCLSRDT----WEPD 47 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNK 109 V+ + +E + ++GGEP Q L++ ++ Sbjct: 48 PRKAVPVEAVLGWLESLPALPDG----VTISGGEPFQQPRALAALLRGIHA 94 >gi|113431887|emb|CAJ31889.1| putative oxydoreductase [Streptococcus thermophilus] Length = 399 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 20/97 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCV 89 CNL C +C + ++ ++I+E G + + Sbjct: 53 CNL-----------SCSYC---YADGGNYGMDNRIMDLTTADNIIQEIASKGVTQINRLI 98 Query: 90 LTGGEPLLQVDV--PLIQALNKRGFEIAVE--TNGTI 122 L GGEP L +++ I+ L+ + +E TNGT+ Sbjct: 99 LFGGEPFLNIELFIYFIEKLSTLLNVVKIETVTNGTV 135 >gi|86157248|ref|YP_464033.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter dehalogenans 2CP-C] gi|85773759|gb|ABC80596.1| GTP cyclohydrolase subunit MoaA [Anaeromyxobacter dehalogenans 2CP-C] Length = 337 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 19/88 (21%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLL 97 DR + +C +C + D L ++ + R LTGGEP L Sbjct: 35 DRCNFRCTYC---------SPAEHEAPDALLQRPEIARLVRVFAGLGVRRVRLTGGEPTL 85 Query: 98 QVDVPLIQALNKRGFEIAVE-----TNG 120 + D L++ + +E TNG Sbjct: 86 RKD--LVEIVADAAGTAGIEEVALTTNG 111 >gi|46579268|ref|YP_010076.1| radical SAM domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|46448682|gb|AAS95335.1| radical SAM domain protein [Desulfovibrio vulgaris str. Hildenborough] Length = 367 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 6/97 (6%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 C L + + C+ C G ++ D+ LI+ G + T Sbjct: 20 CKLIAWEVTRSCNLACKHC--RAEAHMEPYPGEFSTDEAKALIDTFPDVG---NPIIIFT 74 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127 GG+P+++ DV LI +G + NGT+ P+ Sbjct: 75 GGDPMMRGDVYELIAYATDKGLRCVMSPNGTLITPEH 111 >gi|332158225|ref|YP_004423504.1| arylsulfatase regulatory protein, putative [Pyrococcus sp. NA2] gi|331033688|gb|AEC51500.1| arylsulfatase regulatory protein, putative [Pyrococcus sp. NA2] Length = 472 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 51/168 (30%), Gaps = 41/168 (24%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN---VDQLADLIEEQWITGEKEGRYC 88 CNL +C +C + G +KGG ++ + +K Sbjct: 99 CNL-----------RCPYC---YEGDIKSKGGLLTREKIETILTFASAYAQGDKKPTISV 144 Query: 89 VLTGGEPL---------LQVDVPLIQALNKRGFEIAVETNGTIEPPQGID---------- 129 GGEPL LQ + + R + TNGT+ +D Sbjct: 145 SFYGGEPLLNWKGCEYTLQRLEEMKENKEIRDYSAGFVTNGTLINEDIVDAINNYNVYSM 204 Query: 130 WICVS-PKAGCD---LKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173 I + PK D +K G + + + +F +L Sbjct: 205 QITLDGPKEIHDKRRIKSNGEGTFDQIIENIKLLNRRIANKNF-HLAL 251 >gi|320539274|ref|ZP_08038944.1| putative 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Serratia symbiotica str. Tucson] gi|320030666|gb|EFW12675.1| putative 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Serratia symbiotica str. Tucson] Length = 399 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I I GE+ V+ G Sbjct: 133 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALKIAGERPITNVVMMG 192 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL ++ VP ++ L+ GF + + T+G + + D I V Sbjct: 193 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 243 >gi|295699173|ref|YP_003607066.1| radical SAM protein [Burkholderia sp. CCGE1002] gi|295438386|gb|ADG17555.1| Radical SAM domain protein [Burkholderia sp. CCGE1002] Length = 388 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 13/100 (13%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 AV C++ + +A C FC F + G R +D + I Sbjct: 27 LPAV------CDV---SVTNVCNAACDFC--GFSREKNLAGPRRYLDP-DEFARALPILR 74 Query: 82 EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 + RY L GGEPL+ + L+ + K G + V TNG Sbjct: 75 RRRIRYMTLQGGEPLVHPQIASLVASATKAGIQCGVITNG 114 >gi|322418838|ref|YP_004198061.1| Radical SAM domain-containing protein [Geobacter sp. M18] gi|320125225|gb|ADW12785.1| Radical SAM domain protein [Geobacter sp. M18] Length = 408 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 30/112 (26%) Query: 21 GRVAVFC--RFSGCNLWSGREQDRLSAQCRFCDT--DFVGIQGTKGGRY-NVDQLADLIE 75 G +F R CN A C +C T D G T G + + + A+ + Sbjct: 76 GWSCLFINGR---CN-----------ASCFYCPTSQDDTGDPLTNGIPFASPEDYAEYVA 121 Query: 76 EQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKR-GFEIAV--ETNGTI 122 TG ++GGEPLL +D L + A+ +R G + + TNGT+ Sbjct: 122 LFGFTGA------SISGGEPLLTLDRTLAYLDAVRRRCGDSVHLWMYTNGTL 167 >gi|311233095|gb|ADP85949.1| Radical SAM domain protein [Desulfovibrio vulgaris RCH1] Length = 393 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 6/97 (6%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 C L + + C+ C G ++ D+ LI+ G + T Sbjct: 46 CKLIAWEVTRSCNLACKHC--RAEAHMEPYPGEFSTDEAKALIDTFPDVG---NPIIIFT 100 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127 GG+P+++ DV LI +G + NGT+ P+ Sbjct: 101 GGDPMMRGDVYELIAYATDKGLRCVMSPNGTLITPEH 137 >gi|291287190|ref|YP_003504006.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290884350|gb|ADD68050.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 355 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 17/95 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 S CNL + + G++ +++ I++ E Sbjct: 16 TSKCNLKCVHCRSSSGIH-------------SAVGKFTLEKSKKFIDDLI---EFANPVI 59 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 VLTGGEPL++ D+ + +G +A+ TNG++ Sbjct: 60 VLTGGEPLMREDIFDIASYGTSKGLRMAMATNGSL 94 >gi|254460688|ref|ZP_05074104.1| radical SAM domain protein [Rhodobacterales bacterium HTCC2083] gi|206677277|gb|EDZ41764.1| radical SAM domain protein [Rhodobacteraceae bacterium HTCC2083] Length = 317 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119 D++ D +++ I R TGGEP + + + + +A +RG+++ + TN Sbjct: 67 TADEVRDYLDQLEIRNW-GVREIAFTGGEPFMNPEIIEITRASLERGYDVLILTN 120 >gi|152991532|ref|YP_001357254.1| heme d1 biosynthesis protein NirJ [Nitratiruptor sp. SB155-2] gi|151423393|dbj|BAF70897.1| heme d1 biosynthesis protein NirJ [Nitratiruptor sp. SB155-2] Length = 367 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 18/90 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + ++ I + G ++ + + Sbjct: 33 CNL-----------SCLHC---YSKAGLEAQDHLTTQKIMQTIPQLKKGG---VKFVIFS 75 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 GGEPL + D+ + +A+ + G + TNG Sbjct: 76 GGEPLTRKDIFDIAEAMREEGIATYLSTNG 105 >gi|119504213|ref|ZP_01626293.1| Molybdenum cofactor biosynthesis enzyme [marine gamma proteobacterium HTCC2080] gi|119459721|gb|EAW40816.1| Molybdenum cofactor biosynthesis enzyme [marine gamma proteobacterium HTCC2080] Length = 337 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 18/101 (17%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R S DR +C +C + + T R V L ++ + + Sbjct: 20 VRLS--------VTDRCDFRCTYC----MAEEMTFLPRSKVLSLEEIARIAGVFVQLGVA 67 Query: 87 YCVLTGGEPLLQVDV-----PLIQALNKRGF-EIAVETNGT 121 +TGGEPL++ DV L L + G E+AV TNG+ Sbjct: 68 KLRVTGGEPLVRRDVTTLFQELGSLLAEDGLKELAVTTNGS 108 >gi|52549689|gb|AAU83538.1| coenzyme PQQ synthesis protein [uncultured archaeon GZfos30H9] Length = 317 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 18/96 (18%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY- 87 +GC+ CR C F + G + ++ E+ + Sbjct: 22 LTGCDF-----------HCRGC---FRPARDGGGTLLSPEETLKRAEQACLKHYGTLPTK 67 Query: 88 CVLTGGEPLLQV--DVPLIQALNKRGF-EIAVETNG 120 ++TGGEP L + L++ L ++GF EI + +NG Sbjct: 68 AMITGGEPTLDKEFLLTLVKGLEEKGFKEIILMSNG 103 >gi|116624999|ref|YP_827155.1| radical SAM domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116228161|gb|ABJ86870.1| Radical SAM domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 545 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 11/98 (11%) Query: 32 CNLWS---GREQDRLSAQCRF-CDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGR 86 CNL + G L+ +C C F + + + +++ GR Sbjct: 106 CNLHTSHTGLANVDLTNRCNLTCPVCFANANAAGYLYEPDFETVRKMLQALRDQKPVAGR 165 Query: 87 YCVLTGGEPLLQVDVPLIQAL---NKRGF-EIAVETNG 120 +GGEP + + AL + GF + TNG Sbjct: 166 IVQFSGGEPTIYPR--FLDALRLAKEMGFSHTQIATNG 201 >gi|257456734|ref|ZP_05621922.1| conserved hypothetical protein [Treponema vincentii ATCC 35580] gi|257445865|gb|EEV20920.1| conserved hypothetical protein [Treponema vincentii ATCC 35580] Length = 287 Score = 38.1 bits (88), Expect = 0.80, Method: Composition-based stats. Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Query: 93 GEPLLQVDVPLIQA--LNKRGFEIAVETNGTIEPPQG 127 GEPLL I A LN R + +ET+G E P Sbjct: 47 GEPLLHPHFAAIAAQILNHRNLSVLIETSGITEQPAD 83 >gi|237732895|ref|ZP_04563376.1| predicted protein [Mollicutes bacterium D7] gi|229384048|gb|EEO34139.1| predicted protein [Coprobacillus sp. D7] Length = 277 Score = 38.1 bits (88), Expect = 0.80, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 10/79 (12%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPL 103 C FC ++G + + ++ L + + E +TGGEP L D V L Sbjct: 61 NCPFCLERQNPMEGNQDFKKQIESL------KGVLSEHPNARLTITGGEPGLYTDHVVAL 114 Query: 104 IQAL--NKRGFEIAVETNG 120 + + + I+V T+G Sbjct: 115 VDTFKQHSKNIFISVNTSG 133 >gi|170290235|ref|YP_001737051.1| radical SAM domain-containing protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170174315|gb|ACB07368.1| Radical SAM domain protein [Candidatus Korarchaeum cryptofilum OPF8] Length = 252 Score = 38.1 bits (88), Expect = 0.80, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 38/178 (21%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQ----GTKGGRYNVDQLADLIEEQWITGEKEGR 86 GCNL +C FC + G Y+ +++ + + Sbjct: 45 GCNL-----------RCIFC---WSNTPRDNPAMGWGFYSPEEVYRNLVKIAERRGYRLL 90 Query: 87 YCVLTGGEPLL--QVDVPLIQALNKRG-FEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143 +G EP + + +++ + + G F+ +ETNGT+ + + + + + Sbjct: 91 RV--SGNEPTICWDHLMKILELVEEDGRFKFILETNGTLIDEAKAYDLSMFRRVHVRVSL 148 Query: 144 KGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLS 201 KG E + G E F LQ L +LA +P LS Sbjct: 149 KGACEEEFSL---------LTGARPEAFELQ------LNALKHLADQNVPAHPAVMLS 191 >gi|148265590|ref|YP_001232296.1| radical SAM domain-containing protein [Geobacter uraniireducens Rf4] gi|146399090|gb|ABQ27723.1| Radical SAM domain protein [Geobacter uraniireducens Rf4] Length = 365 Score = 38.1 bits (88), Expect = 0.80, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 20/92 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD-QLADLIEEQWITGEKEGRYCVL 90 CNL CR C +V G+ + + L L+EE G R+ Sbjct: 29 CNLT-----------CRHC---WVEAGGSSAAAHVPERTLRRLMEEFVALGGAGIRF--- 71 Query: 91 TGGEPLLQVD-VPLIQALNKRG-FEIAVETNG 120 TGGEPL + L+Q G +++++TNG Sbjct: 72 TGGEPLCHPAWLKLMQFGRSIGLCDVSIQTNG 103 >gi|328952248|ref|YP_004369582.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109] gi|328452572|gb|AEB08401.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109] Length = 336 Score = 38.1 bits (88), Expect = 0.81, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 16/100 (16%) Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDV-P 102 A+C +C + T + L+ K+ L G GEP L D Sbjct: 27 ARCAYC--PHTVFRST----WTSRHLSLTTFRNLAPDLKKVNLVFLQGWGEPFLHPDFFH 80 Query: 103 LIQALNKRGFEIAVETNGTIE--------PPQGIDWICVS 134 + + G + TNGT+ GID + S Sbjct: 81 FVSLAKEAGCRVGATTNGTLLTGENINRVVESGIDLLAFS 120 >gi|221200637|ref|ZP_03573678.1| radical SAM domain protein [Burkholderia multivorans CGD2M] gi|221208465|ref|ZP_03581467.1| radical SAM domain protein [Burkholderia multivorans CGD2] gi|221210406|ref|ZP_03583386.1| radical SAM domain protein [Burkholderia multivorans CGD1] gi|221169362|gb|EEE01829.1| radical SAM domain protein [Burkholderia multivorans CGD1] gi|221171653|gb|EEE04098.1| radical SAM domain protein [Burkholderia multivorans CGD2] gi|221179209|gb|EEE11615.1| radical SAM domain protein [Burkholderia multivorans CGD2M] Length = 386 Score = 38.1 bits (88), Expect = 0.81, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 22/120 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R +V++ ++E + Sbjct: 38 CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEPLL ++P +++ + KR + + TN + + +D SP + + G +E+ Sbjct: 79 AGGEPLLHKEMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYQPSPYFVWSVHLDGDKEM 137 >gi|210635394|ref|ZP_03298518.1| hypothetical protein COLSTE_02449 [Collinsella stercoris DSM 13279] gi|210158414|gb|EEA89385.1| hypothetical protein COLSTE_02449 [Collinsella stercoris DSM 13279] Length = 410 Score = 38.1 bits (88), Expect = 0.81, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 25/112 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C R L +L + V++ Sbjct: 89 CNL-----------SCVGC-----YSADCNRNRAADPSLENLCHAIAALAQLGVTRMVVS 132 Query: 92 GGEPLLQVDVP-LIQALNKRGFE-IAVETNGTI-------EPPQGIDWICVS 134 GGEP L+ D+P +++ ++G E IAV TNGT +D I VS Sbjct: 133 GGEPFLRRDLPDIVRNAREQGMESIAVLTNGTRCSDKVLARLAGNVDVISVS 184 >gi|149376005|ref|ZP_01893771.1| molybdenum cofactor synthesis-like protein [Marinobacter algicola DG893] gi|149359642|gb|EDM48100.1| molybdenum cofactor synthesis-like protein [Marinobacter algicola DG893] Length = 330 Score = 38.1 bits (88), Expect = 0.81, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR +C +C + + T R V L ++ + LTG Sbjct: 15 NYVRLSVTDRCDFRCVYC----MAEEMTFLPRQQVLTLEEIAQVAKTFVSLGTEKIRLTG 70 Query: 93 GEPLLQVD-VPLIQALNKRGFE-IAVETNGTIEP 124 GEPL++ + L++ + G A+ TNG+ P Sbjct: 71 GEPLVRRGILELVKEIGTLGLRDFAMTTNGSQLP 104 >gi|15674526|ref|NP_268700.1| putative pyruvate formate-lyase activating protein [Streptococcus pyogenes M1 GAS] gi|21909813|ref|NP_664081.1| putative pyruvate formate-lyase activating enzyme [Streptococcus pyogenes MGAS315] gi|28896494|ref|NP_802844.1| pyruvate-formate lyase activating enzyme [Streptococcus pyogenes SSI-1] gi|13621630|gb|AAK33421.1| putative pyruvate-formate lyase activating enzyme [Streptococcus pyogenes M1 GAS] gi|21903999|gb|AAM78884.1| putative pyruvate formate-lyase activating enzyme [Streptococcus pyogenes MGAS315] gi|28811748|dbj|BAC64677.1| putative pyruvate-formate lyase activating enzyme [Streptococcus pyogenes SSI-1] Length = 263 Score = 38.1 bits (88), Expect = 0.81, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 36/178 (20%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G +F GC L +C++C DT + +K Sbjct: 16 TESFGSVDGPGIRFI----IF--LQGCKL-----------RCQYCHNPDTWEMETNNSKI 58 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVET 118 N D L + ++ + G+K G ++GGE +LQ+D I AL K G ++T Sbjct: 59 RTVN-DVLKEALQYKHFWGKKGG--ITVSGGEAMLQID--FITALFIEAKKLGIHTTLDT 113 Query: 119 NG-TIEPPQGIDWI-----CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 G T P + V+ DLK ++ K+V Q N + + + ++ Sbjct: 114 CGFTYRPTPEYHQVLDNLLAVTDLILLDLKEIDEKQHKIVTRQPNKNILQFARYLSDK 171 >gi|332180043|gb|AEE15731.1| (Formate-C-acetyltransferase)-activating enzyme [Treponema brennaborense DSM 12168] Length = 258 Score = 38.1 bits (88), Expect = 0.81, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 27/109 (24%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFC----DTDFV-------GIQGTKGGRYNVDQLAD 72 VF GCN C +C + F IQG G + + L Sbjct: 27 TVF--LKGCN-----------IHCPWCANPENIAFTPQYYSSDNIQGLFGKYISANDLYM 73 Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETN 119 I + + EG +GGEPLLQ VPL++ ++ ET+ Sbjct: 74 EILKDKPFYKTEGG-VTFSGGEPLLQMEKLVPLMEKCKSSEIKLCAETS 121 >gi|330838041|ref|YP_004412621.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185] gi|329745805|gb|AEB99161.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185] Length = 289 Score = 38.1 bits (88), Expect = 0.81, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 22/101 (21%) Query: 31 GCNLWSGREQDRLSAQCRFCD--TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCNL +C FC T + ++ +LA L + Sbjct: 83 GCNL-----------RCPFCQNYTISMTDGQSETQDVTPAELAALAHDL-SRRPHGNIGV 130 Query: 89 VLTGGEPLLQ-----VDVPLIQALNKRGFEIAVETNGTIEP 124 T EPLL PL L++ G + + TNGTI P Sbjct: 131 AFTYNEPLLSYEFIMDVAPL---LHEAGLFVVLVTNGTIAP 168 >gi|163746267|ref|ZP_02153625.1| radical SAM domain protein [Oceanibulbus indolifex HEL-45] gi|161380152|gb|EDQ04563.1| radical SAM domain protein [Oceanibulbus indolifex HEL-45] Length = 315 Score = 38.1 bits (88), Expect = 0.81, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 8/89 (8%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCVLT 91 LW + +C C ++ D++ D ++ Q + + R T Sbjct: 35 LWFNT-GTLCNIECVNC---YIASSPKNDALVYITADEVRDYLD-QIVERDWPVREIAFT 89 Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETN 119 GGEP + V + +A RG+E+ + TN Sbjct: 90 GGEPFMNPQMVEITEASLMRGYEVLILTN 118 >gi|152975978|ref|YP_001375495.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024730|gb|ABS22500.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Bacillus cytotoxicus NVH 391-98] Length = 150 Score = 38.1 bits (88), Expect = 0.81, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 23/85 (27%) Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI 74 GEG VF F+GC +C C G +++ I Sbjct: 14 GEGLRT---VVF--FAGCP-----------HRCVGCHNPQSWNIC-NGTEMTAEEIIKEI 56 Query: 75 EEQWITGEKEGRYCVLTGGEPLLQV 99 + +GG+P LQ Sbjct: 57 V------KNPLTDVTFSGGDPFLQA 75 >gi|77919674|ref|YP_357489.1| MoaA/NifB/PqqE family Fe-S oxidoreductase [Pelobacter carbinolicus DSM 2380] gi|77545757|gb|ABA89319.1| predicted Fe-S oxidoreductase, MoaA/NifB/PqqE family [Pelobacter carbinolicus DSM 2380] Length = 336 Score = 38.1 bits (88), Expect = 0.81, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 27/141 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C+ C R V++ EE L Sbjct: 38 CNL-----------RCKGCG-KISHPPEVMKRRLTVEECVAKAEECG------APIVSLP 79 Query: 92 GGEPLLQVDVPLIQA-LNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL- 149 GGEPL+ ++ +I L R + + TN + + + SP ++ + G ++ Sbjct: 80 GGEPLMHPEIHVIARELIARKRFVYLCTN-ALLVEKRLQDFEPSPYLTFNVHLDGLRDKH 138 Query: 150 ------KLVFPQVNVSPENYI 164 K VF Q S + Sbjct: 139 DALVNRKGVFDQAVQSIRRLV 159 >gi|103487140|ref|YP_616701.1| molybdenum cofactor synthesis-like protein [Sphingopyxis alaskensis RB2256] gi|98977217|gb|ABF53368.1| GTP cyclohydrolase subunit MoaA [Sphingopyxis alaskensis RB2256] Length = 337 Score = 38.1 bits (88), Expect = 0.81, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 10/59 (16%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 DR +CR+C D F+ K +++++A+L E G + R LTGGEPL Sbjct: 31 DRCDLRCRYCMAEDMRFL----PKSAVLSIEEMAELAERFVARGVRRIR---LTGGEPL 82 >gi|300855584|ref|YP_003780568.1| radical SAM domain-containing protein [Clostridium ljungdahlii DSM 13528] gi|300435699|gb|ADK15466.1| radical SAM domain protein [Clostridium ljungdahlii DSM 13528] Length = 462 Score = 38.1 bits (88), Expect = 0.82, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 21/106 (19%) Query: 31 GCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 GC G + R + +C+FC F K +++++ Sbjct: 77 GCPFDCGLCSEHRQHTCTALIEVTQRCNLKCKFC---FADSYAGKEKDISIEKI--KFMY 131 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNG 120 + + L+GGEP ++ D+P +++ K GF+ I V TNG Sbjct: 132 KKLLESSGSCNVQLSGGEPTIRDDLPDIVKLGRKLGFKFIQVNTNG 177 >gi|290955840|ref|YP_003487022.1| hypothetical protein SCAB_12931 [Streptomyces scabiei 87.22] gi|260645366|emb|CBG68452.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 356 Score = 38.1 bits (88), Expect = 0.82, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C G R V Q + E + Sbjct: 51 CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 92 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ + +++ L + + + TN + + ++ SP + I G +E Sbjct: 93 GGEPLMHPQIDEIVRQLVAKRKYVFLCTN-ALLLRKKMEKFKPSPYFAFAVHIDGLRE 149 >gi|47220097|emb|CAF99010.1| unnamed protein product [Tetraodon nigroviridis] Length = 354 Score = 38.1 bits (88), Expect = 0.82, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 13/112 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N ++ + +C++C G++ T R + +++++ + ++ LTG Sbjct: 19 NYLRVSLTEKCNLRCQYC-MPEDGVKLTP--RSQLLSTSEILKLAGLFVQEGVDKIRLTG 75 Query: 93 GEPLLQVD-VPLIQALNK-RGFE-IAVETNG---TIEPP----QGIDWICVS 134 GEPL++ D + +I L G + IAV TNG P G+D I +S Sbjct: 76 GEPLIRPDVLEIITKLRTLEGLKTIAVTTNGINLARLLPKMKDAGVDLINIS 127 >gi|18976462|ref|NP_577819.1| molybdenum cofactor biosynthesis protein A [Pyrococcus furiosus DSM 3638] gi|24211985|sp|Q8U4J5|MOAA_PYRFU RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|18892001|gb|AAL80214.1| molybdenum cofactor biosynthesis protein [Pyrococcus furiosus DSM 3638] Length = 307 Score = 38.1 bits (88), Expect = 0.82, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 18/91 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C Q +++ ++ I R LT Sbjct: 21 CNL-----------NCFYC---HREGQQDGERTMTPEEIERIV---RIASRLGIRNVKLT 63 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 GGEP ++ D+ +IQ + ++++ TNGT Sbjct: 64 GGEPTVRPDIYEIIQRIRPYVVDLSMTTNGT 94 >gi|305663253|ref|YP_003859541.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230] gi|304377822|gb|ADM27661.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230] Length = 336 Score = 38.1 bits (88), Expect = 0.83, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C +V G + + D+ LI+E E + + Sbjct: 16 CNL-----------SCIHC---YVNAGRGATLEQLSTDEALRLIQE---IAELGAKAIIF 58 Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 T GEPL++ D + LI+ + G + + TNGT+ Sbjct: 59 TSGEPLMRSDILDLIEYASDIGLKPILATNGTL 91 >gi|242398029|ref|YP_002993453.1| Fe-S oxidoreductase [Thermococcus sibiricus MM 739] gi|242264422|gb|ACS89104.1| Fe-S oxidoreductase [Thermococcus sibiricus MM 739] Length = 247 Score = 38.1 bits (88), Expect = 0.83, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 GEP+L + L++ +KRGF + +NGT Sbjct: 61 GEPMLYPMIGELVEEFHKRGFTTFIVSNGT 90 >gi|307353123|ref|YP_003894174.1| Radical SAM domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307156356|gb|ADN35736.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571] Length = 317 Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 8/91 (8%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR--YCVLTG-GEPLLQVD 100 S C +C + R A++IEE + R Y +G GEP L Sbjct: 35 SYNCIYC--ECGKTTNLTSERREYVPTAEVIEELDSYLSESPRLDYITYSGSGEPTLHSG 92 Query: 101 VPLIQALNK---RGFEIAVETNGTIEPPQGI 128 + I K G+ +A+ TNG++ +G+ Sbjct: 93 IEKITRFIKDNYPGYRVALLTNGSLFFDKGV 123 >gi|304314983|ref|YP_003850130.1| Fe-S oxidoreductase [Methanothermobacter marburgensis str. Marburg] gi|302588442|gb|ADL58817.1| predicted Fe-S oxidoreductase [Methanothermobacter marburgensis str. Marburg] Length = 491 Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 14/106 (13%) Query: 29 FSGCNLWSGREQDRLSA----------QCRF-CDTDFVGIQGTKG-GRYNVDQLADLIEE 76 GC L G + S +C C F +K +++ +++ Sbjct: 72 LKGCPLDCGLCPEHESHTVLGLIDVTNRCNLKCPICFANAAVSKYLYEPTYEEIREMLRN 131 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120 GGEP ++ D+ L++ + GF + + TNG Sbjct: 132 LRRNRPVPTPAIQYAGGEPTVRKDIVELVKLAREEGFTHVQIATNG 177 >gi|302339424|ref|YP_003804630.1| radical SAM protein [Spirochaeta smaragdinae DSM 11293] gi|301636609|gb|ADK82036.1| Radical SAM domain protein [Spirochaeta smaragdinae DSM 11293] Length = 540 Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 4/80 (5%) Query: 44 SAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102 +C +C + + + + LA ++++ E+ L G EP L D+ Sbjct: 269 PQRCSWCPYPKAPSKAIDRSESMSPEALASILDQVLELSEEAVIGLSLWG-EPALHPDIQ 327 Query: 103 LI--QALNKRGFEIAVETNG 120 + + +++ G +ET+G Sbjct: 328 AMVGEVISRPGLSAMIETSG 347 >gi|297531012|ref|YP_003672287.1| molybdenum cofactor biosynthesis protein A [Geobacillus sp. C56-T3] gi|297254264|gb|ADI27710.1| molybdenum cofactor biosynthesis protein A [Geobacillus sp. C56-T3] Length = 341 Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 13/104 (12%) Query: 28 RFSGCNLWSGREQ--DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 R + L R D+ + +C +C + G DQL +EE + E Sbjct: 12 RLAR-PLRDLRLSVTDQCNFRCVYC--MPAEVFGPNFRFLAEDQLL-TVEEMALLAECFV 67 Query: 86 RYCV----LTGGEPLLQVDV-PLIQALNKR-GFE-IAVETNGTI 122 V LTGGEPLL+ D+ LI+ L+ G I + TNG Sbjct: 68 ELGVEKIRLTGGEPLLRRDLDALIERLSALPGLRDIGLTTNGVH 111 >gi|282163623|ref|YP_003356008.1| hypothetical protein MCP_0953 [Methanocella paludicola SANAE] gi|282155937|dbj|BAI61025.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 280 Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 15/79 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C CD Q +++Q+ I+E + R VL Sbjct: 49 CNL-----------KCYNCD--RSCTQAPSELTMSLEQIRKFIDESISNDKHWSRIRVL- 94 Query: 92 GGEPLLQVDVP-LIQALNK 109 GGEP L D+ +++ L Sbjct: 95 GGEPTLHPDIDKILKILLD 113 >gi|251781842|ref|YP_002996144.1| pyruvate formate-lyase activating enzyme [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390471|dbj|BAH80930.1| pyruvate formate-lyase activating enzyme [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|322411188|gb|EFY02096.1| Pyruvate formate-lyase activating enzyme [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|323126656|gb|ADX23953.1| Pyruvate formate-lyase activating enzyme [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 287 Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 32/176 (18%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G +F GC +C++C DT + +K Sbjct: 40 TESFGSVDGPGIRFI----IF--LQGC-----------KMRCQYCHNPDTWEMETNNSKL 82 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 N D L + ++ + G+K G ++GGE +LQ+D L K G ++T G Sbjct: 83 RTVN-DVLKEALQYKHFWGKKGG--ITVSGGEAMLQIDFITALFTEAKKLGIHTTLDTCG 139 Query: 121 -----TIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 T E + +D + V+ DLK ++ K+V Q N + + + ++ Sbjct: 140 FAYRPTPEYHEVLDKLLAVTDLILLDLKEIDEEQHKIVTRQPNQNILEFARYLSDK 195 >gi|169349535|ref|ZP_02866473.1| hypothetical protein CLOSPI_00262 [Clostridium spiroforme DSM 1552] gi|169293610|gb|EDS75743.1| hypothetical protein CLOSPI_00262 [Clostridium spiroforme DSM 1552] Length = 166 Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 21/93 (22%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 A+F GC C C G +++++ I+E + Sbjct: 22 AIFV--QGC-----------YHNCLGCHNP-KSHDVNGGYLKDIEEILKEIDENPLLDG- 66 Query: 84 EGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114 L+GGEP+LQ + L + + KR I Sbjct: 67 ----VTLSGGEPMLQVEALIELSKEIKKRNLNI 95 >gi|161527627|ref|YP_001581453.1| radical SAM domain-containing protein [Nitrosopumilus maritimus SCM1] gi|160338928|gb|ABX12015.1| Radical SAM domain protein [Nitrosopumilus maritimus SCM1] Length = 559 Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 13/130 (10%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD--QLADLIEEQWITGEKEGRYCVLT 91 L + +R C +C +V Y D Q+ +++ G +T Sbjct: 114 LANMIVTNRCDLTCWYC-FFYVKKGLEGAYMYEPDHTQIRGMMKTLRAERPIPGNSMQIT 172 Query: 92 GGEPLLQVDVP-LIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEP+L+ D+ +I+ + + G I + TNG + P+A ++++ G L Sbjct: 173 GGEPMLREDIADVIKIMKEEGVDHIQMNTNGIRHA--------MDPEAAREVRLAGCNNL 224 Query: 150 KLVFPQVNVS 159 L F V Sbjct: 225 YLSFDGVTAR 234 >gi|161484622|ref|NP_082740.1| molybdenum cofactor biosynthesis protein 1 isoform 2 [Mus musculus] gi|148691686|gb|EDL23633.1| molybdenum cofactor synthesis 1, isoform CRA_c [Mus musculus] Length = 385 Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + K +++ L G + R LT Sbjct: 80 CNL-----------RCQYCMPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 125 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GGEPL++ D V ++ L+ G I + TNG Sbjct: 126 GGEPLIRPDVVDIVARLHGLEGLRTIGLTTNG 157 >gi|124009850|ref|ZP_01694518.1| radical SAM domain protein [Microscilla marina ATCC 23134] gi|123984171|gb|EAY24532.1| radical SAM domain protein [Microscilla marina ATCC 23134] Length = 310 Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 15/89 (16%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLI 104 C C + G KG + + ++ +IE ++ +L+GGEPL Q ++ Sbjct: 23 CAHC----YNLSGPKGAKMSEEECMQIIENLPPKIDR----IILSGGEPLAERQKLYAIL 74 Query: 105 QALNKRGFEIA----VETNGTIEPPQGID 129 L +R + ++TNG + + +D Sbjct: 75 DRLKQR-YPAHTQLMLQTNGDLLTEEILD 102 >gi|117926754|ref|YP_867371.1| radical SAM protein [Magnetococcus sp. MC-1] gi|117610510|gb|ABK45965.1| Radical SAM domain protein [Magnetococcus sp. MC-1] Length = 318 Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 20/105 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL QCR C + + + Q+ LI + + +T Sbjct: 33 CNL-----------QCRHCHVGAAPQRTEQMSWAVMQQVLALITQSG------CKQVDIT 75 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP 135 GG P + + P IQAL R + + TN + + DW ++P Sbjct: 76 GGAPEMNAHIQPFIQALRARDVAVQLRTN--LTLHRDPDWHAMAP 118 >gi|325262590|ref|ZP_08129327.1| radical SAM domain protein [Clostridium sp. D5] gi|324032422|gb|EGB93700.1| radical SAM domain protein [Clostridium sp. D5] Length = 451 Score = 38.1 bits (88), Expect = 0.85, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 18/98 (18%) Query: 32 CNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGR 86 CN+ D SA +C C G ++ D+L ++I + G Sbjct: 110 CNVPWLILMDPTSACNLKCTGC------WAAEYGHTLSLTYDELDNIISQGKELGIYFYM 163 Query: 87 YCVLTGGEPLLQVDVPLIQALNKRGFEIAVE--TNGTI 122 Y TGGEPL++ I L ++ E A TNGT+ Sbjct: 164 Y---TGGEPLVRKAD--IVKLCEKHKECAFHAFTNGTL 196 >gi|255021076|ref|ZP_05293129.1| hypothetical protein ACA_2803 [Acidithiobacillus caldus ATCC 51756] gi|254969490|gb|EET26999.1| hypothetical protein ACA_2803 [Acidithiobacillus caldus ATCC 51756] Length = 399 Score = 38.1 bits (88), Expect = 0.85, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 8/86 (9%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 A+C +CD + Y +ADL E + L GG P L Sbjct: 18 WCLAKCPYCDFNSYAAPEFPAEHYVDALIADLERELPRIWGRPVHSIFLGGGTPSLFPPE 77 Query: 102 P---LIQALNKR-----GFEIAVETN 119 L+ L R G E+++E N Sbjct: 78 SIARLLSELRARLRLMPGLEVSLEAN 103 >gi|282895356|ref|ZP_06303557.1| Radical SAM [Raphidiopsis brookii D9] gi|281199607|gb|EFA74468.1| Radical SAM [Raphidiopsis brookii D9] Length = 308 Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + +Q +EE + Sbjct: 8 CNL-----------ACSGCG-KIQHPTEVLKQNLSPEQCFAAVEECG------APVVSIP 49 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPLL + ++Q L R + + TNG + + + SP + + G +E Sbjct: 50 GGEPLLHPQINQIVQGLVDRKKYVYLCTNG-LLLEKSLHKFKPSPYLTFSVHLDGMKE 106 >gi|225388730|ref|ZP_03758454.1| hypothetical protein CLOSTASPAR_02466 [Clostridium asparagiforme DSM 15981] gi|225045200|gb|EEG55446.1| hypothetical protein CLOSTASPAR_02466 [Clostridium asparagiforme DSM 15981] Length = 303 Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%) Query: 88 CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 L+GGEPLLQ + +++ + + G A+ET+ Sbjct: 127 ITLSGGEPLLQPEFAAAVLKGMQEEGVHTAMETS 160 >gi|183598216|ref|ZP_02959709.1| hypothetical protein PROSTU_01600 [Providencia stuartii ATCC 25827] gi|188020385|gb|EDU58425.1| hypothetical protein PROSTU_01600 [Providencia stuartii ATCC 25827] Length = 326 Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 7/83 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D + +C +C + G + L+++ E +TGGEP ++ D Sbjct: 21 DVCNFRCTYC----LPDGYKPSGHHEFLSLSEIQRISRAFAELGTEKVRITGGEPTMRKD 76 Query: 101 -VPLIQALNKRG--FEIAVETNG 120 +I A+++ +IAV TNG Sbjct: 77 FTDIIAAIHENQAIKKIAVTTNG 99 >gi|167749297|ref|ZP_02421424.1| hypothetical protein EUBSIR_00248 [Eubacterium siraeum DSM 15702] gi|167657742|gb|EDS01872.1| hypothetical protein EUBSIR_00248 [Eubacterium siraeum DSM 15702] Length = 457 Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 29/113 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-----NVDQLADLIEEQWITGEKEGR 86 CNL +C++C F G R + D + + + +E Sbjct: 107 CNL-----------RCKYC---FAQTGDFGGDRMLMKPETGKKAMDFLIKH--SANRENL 150 Query: 87 YCVLTGGEPLLQVDVPL--------IQALNKRGFEIAVETNGTIEPPQGIDWI 131 GGEPL+ D + I+ + + F + TNG + + ID+I Sbjct: 151 EVDFFGGEPLMAWDTVVETVKYARSIEKQHGKNFRFTITTNGMLLDDEKIDYI 203 >gi|122577959|sp|Q38HX2|HPDA_CLOSL RecName: Full=4-hydroxyphenylacetate decarboxylase activating enzyme; AltName: Full=Csd-AE gi|77863917|gb|ABB05048.1| 4-hydroxyphenylacetate decarboxylase activating enzyme [Clostridium scatologenes] Length = 312 Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN---KRGFEIAVETN 119 Y VD+L +++ + +G TGG+PL+ + L++ L A+ET+ Sbjct: 111 KEYTVDELMTILKRDFNNWGSDGG-VTFTGGDPLMHHEF-LVEVLKKCYDSQIHKAIETS 168 Query: 120 G 120 G Sbjct: 169 G 169 >gi|325829809|ref|ZP_08163267.1| putative heme d1 biosynthesis radical SAM protein NirJ2 [Eggerthella sp. HGA1] gi|325487976|gb|EGC90413.1| putative heme d1 biosynthesis radical SAM protein NirJ2 [Eggerthella sp. HGA1] Length = 334 Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 7/94 (7%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L S ++ + +C C + + + ++ +I+E G + + +GG Sbjct: 2 LVSWMTTNKCNLKCVHC---YQDAEEATDKELSCEEGKKMIDEIARAG---FKVMIFSGG 55 Query: 94 EPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 EPL++ D+ L+ RG +NGT+ P+ Sbjct: 56 EPLMRPDIYELVAHAASRGLRPVFGSNGTLITPE 89 >gi|317489825|ref|ZP_07948322.1| radical SAM superfamily protein [Eggerthella sp. 1_3_56FAA] gi|316911074|gb|EFV32686.1| radical SAM superfamily protein [Eggerthella sp. 1_3_56FAA] Length = 334 Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 7/94 (7%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L S ++ + +C C + + + ++ +I+E G + + +GG Sbjct: 2 LVSWMTTNKCNLKCVHC---YQDAEEATDKELSCEEGKKMIDEIARAG---FKVMIFSGG 55 Query: 94 EPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 EPL++ D+ L+ RG +NGT+ P+ Sbjct: 56 EPLMRPDIYELVAHAASRGLRPVFGSNGTLITPE 89 >gi|291556614|emb|CBL33731.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Eubacterium siraeum V10Sc8a] Length = 457 Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 29/113 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-----NVDQLADLIEEQWITGEKEGR 86 CNL +C++C F G R + D + + + +E Sbjct: 107 CNL-----------RCKYC---FAQTGDFGGDRMLMKPETGKKAMDFLIKH--SANRENL 150 Query: 87 YCVLTGGEPLLQVDVPL--------IQALNKRGFEIAVETNGTIEPPQGIDWI 131 GGEPL+ D + I+ + + F + TNG + + ID+I Sbjct: 151 EVDFFGGEPLMAWDTVVETVKYARSIEKQHGKNFRFTITTNGMLLDDEKIDYI 203 >gi|284097785|ref|ZP_06385774.1| heme d1 biosynthesis protein NirJ [Candidatus Poribacteria sp. WGA-A3] gi|283830685|gb|EFC34806.1| heme d1 biosynthesis protein NirJ [Candidatus Poribacteria sp. WGA-A3] Length = 454 Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 16/91 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C D G + ++ LI++ + V+T Sbjct: 52 CNL-----------KCDHCYLDATTKAGGGSDELSTEECYRLIDQIAEVNKGC--LLVIT 98 Query: 92 GGEPLLQVDVPLIQALNK--RGFEIAVETNG 120 GGEPL++ D+ L A + +GF + TNG Sbjct: 99 GGEPLVRPDI-LDIARHAVGQGFMVVFGTNG 128 >gi|225871127|ref|YP_002747074.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp. equi 4047] gi|225700531|emb|CAW95000.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp. equi 4047] Length = 263 Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 32/176 (18%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G +F GC +C++C DT + Sbjct: 16 TESFGSVDGPGIRFI----IF--LQGC-----------KMRCQYCHNPDT-WAMETNQSQ 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 R D L + ++ + G+K G ++GGE +LQ+D L K G ++T G Sbjct: 58 RRTVNDVLKEALQYRHFWGKKGG--ITVSGGEAMLQMDFITALFTEAKKLGIHTTLDTCG 115 Query: 121 -TIEPPQGI-----DWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 P + V+ DLK ++ KLV Q N + + + +R Sbjct: 116 FAYRPTPEYHELLETLLAVTDLILLDLKEIDEEQHKLVTRQPNKNILQFARYLSDR 171 >gi|195978725|ref|YP_002123969.1| pyruvate formate-lyase-activating enzyme [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225867958|ref|YP_002743906.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp. zooepidemicus] gi|195975430|gb|ACG62956.1| pyruvate formate-lyase-activating enzyme [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225701234|emb|CAW98186.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp. zooepidemicus] Length = 263 Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 32/176 (18%) Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62 E F ++ G G +F GC +C++C DT + Sbjct: 16 TESFGSVDGPGIRFI----IF--LQGC-----------KMRCQYCHNPDT-WAMETNQSQ 57 Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120 R D L + ++ + G+K G ++GGE +LQ+D L K G ++T G Sbjct: 58 RRTVNDVLKEALQYRHFWGKKGG--ITVSGGEAMLQMDFITALFTEAKKLGIHTTLDTCG 115 Query: 121 -TIEPPQGI-----DWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 P + V+ DLK ++ KLV Q N + + + +R Sbjct: 116 FAYRPTPEYHELLETLLAVTDLILLDLKEIDEEQHKLVTRQPNKNILQFARYLSDR 171 >gi|154148652|ref|YP_001406023.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Campylobacter hominis ATCC BAA-381] gi|153804661|gb|ABS51668.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Campylobacter hominis ATCC BAA-381] Length = 225 Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 29/122 (23%) Query: 29 FSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 F GCN+ +C +C +T V G++ D L + ++ + Sbjct: 25 FCGCNM-----------RCVYCYNTKIV---SATNGKFGADDLYEFLK----MRRNKLDA 66 Query: 88 CVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAG 138 V +GGE + +++ + GF ++TNG+ D+I + KAG Sbjct: 67 VVFSGGE-CTNCHEILEILKCVKNLGFLNKIDTNGSNPDILAEILKRNLADFISLDFKAG 125 Query: 139 CD 140 + Sbjct: 126 NE 127 >gi|18313235|ref|NP_559902.1| molybdenum cofactor biosynthesis protein (moaA) [Pyrobaculum aerophilum str. IM2] gi|18160754|gb|AAL64084.1| molybdenum cofactor biosynthesis protein (moaA) [Pyrobaculum aerophilum str. IM2] Length = 580 Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 6/90 (6%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 L +R + C C F ++Q+ ++ ++G Sbjct: 153 LAIIDVTNRCNMACPVC---FANAGAAGYVYEPTLEQIEYMLRTLRAQKPWPPNAIQISG 209 Query: 93 GEPLLQVDVPLIQALNKRGFEIAVE--TNG 120 GEP L+ D+P I + KR VE TNG Sbjct: 210 GEPTLRDDLPEIVRMAKRLGFTHVEVNTNG 239 >gi|255658436|ref|ZP_05403845.1| organic radical activating enzyme family protein [Mitsuokella multacida DSM 20544] gi|260849772|gb|EEX69779.1| organic radical activating enzyme family protein [Mitsuokella multacida DSM 20544] Length = 213 Score = 38.1 bits (88), Expect = 0.87, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 16/81 (19%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 +GC +C C ++ Q G + ++L +L+ + G Sbjct: 29 LAGCP-----------RRCPGC-SNPELWQAQAGQALSQERLQELLRPFLSREDLGG--V 74 Query: 89 VLTGGEPLLQVD--VPLIQAL 107 V+TGG+P Q D +PL+ L Sbjct: 75 VVTGGDPFFQADALLPLLAYL 95 >gi|320530010|ref|ZP_08031085.1| molybdenum cofactor biosynthesis protein A [Selenomonas artemidis F0399] gi|320137746|gb|EFW29653.1| molybdenum cofactor biosynthesis protein A [Selenomonas artemidis F0399] Length = 305 Score = 38.1 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 10/79 (12%) Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFE-IAVETNGTI 122 ++ +++ + R LTGGEPL++ D+ L++ L + G E +AV TNG + Sbjct: 13 DILSYEEILRDVRALAALGIRKVRLTGGEPLVRRDIVTLVRGLKEIPGIETVAVTTNGVL 72 Query: 123 -------EPPQGIDWICVS 134 G+D + +S Sbjct: 73 LGTMLDDLVAAGLDAVNLS 91 >gi|294338253|emb|CBJ94291.1| hypothetical phage protein (Radical SAM family) [Campylobacter phage CPt10] Length = 266 Score = 38.1 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 9/94 (9%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-L 90 C + D C +C + ++ LI++ + R+ + + Sbjct: 2 CKVIVLNLIDYCGFNCEYCSS--SQVKKVNSNPLTKLNFLMLIKQ---IEKSLSRFIIKV 56 Query: 91 TGGEPLLQVD-VPLIQALN--KRGFEIAVETNGT 121 TGGEP L + + I+ LN K + + TNG+ Sbjct: 57 TGGEPTLHPNFLEFIEKLNNVKNIQRVIITTNGS 90 >gi|209518310|ref|ZP_03267135.1| Radical SAM domain protein [Burkholderia sp. H160] gi|209501229|gb|EEA01260.1| Radical SAM domain protein [Burkholderia sp. H160] Length = 388 Score = 38.1 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 13/100 (13%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 AV C++ + +A C FC F + G R +D + I Sbjct: 27 LPAV------CDV---SVTNVCNAACDFC--GFSREKKLAGPRRYLDP-DEFARALPILR 74 Query: 82 EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 + RY L GGEPL+ ++ L+ + K G + V TNG Sbjct: 75 RRRIRYMTLQGGEPLVHPEIASLVASTTKAGIQCGVITNG 114 >gi|125973052|ref|YP_001036962.1| radical SAM family protein [Clostridium thermocellum ATCC 27405] gi|256004555|ref|ZP_05429533.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360] gi|281417247|ref|ZP_06248267.1| Radical SAM domain protein [Clostridium thermocellum JW20] gi|125713277|gb|ABN51769.1| Radical SAM [Clostridium thermocellum ATCC 27405] gi|255991427|gb|EEU01531.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360] gi|281408649|gb|EFB38907.1| Radical SAM domain protein [Clostridium thermocellum JW20] gi|316940727|gb|ADU74761.1| Radical SAM domain protein [Clostridium thermocellum DSM 1313] Length = 510 Score = 38.1 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 18/91 (19%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCN+ +C+ C + + G ++ L +E G ++ L Sbjct: 14 GCNM-----------RCKHCGS---SCENALEGELTTEEALKLCDELGELG---FKWITL 56 Query: 91 TGGEPLLQVDVPLI-QALNKRGFEIAVETNG 120 +GGEP + D LI + LN+ G + TNG Sbjct: 57 SGGEPTTRKDWHLIAKRLNENGIIPNMITNG 87 >gi|330433419|gb|AEC18478.1| molybdenum cofactor biosynthesis protein A [Gallibacterium anatis UMN179] Length = 338 Score = 38.1 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 17/106 (16%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY--NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C G Q + +VD++A L+ G ++ R +TGGEP L+ Sbjct: 32 DVCNFKCNYC--LPNGYQPPSNKQMFLSVDEIARLVSAFAELGTEKVR---ITGGEPTLR 86 Query: 99 VD-VPLIQALNKRG--FEIAVETNG-------TIEPPQGIDWICVS 134 D + +++A+ ++ +IA+ TNG GID I VS Sbjct: 87 KDFLAVVEAIRRQQSIKKIALTTNGYRMAKEVASWKQAGIDSINVS 132 >gi|303245560|ref|ZP_07331843.1| Methyltransferase type 11 [Desulfovibrio fructosovorans JJ] gi|302492823|gb|EFL52688.1| Methyltransferase type 11 [Desulfovibrio fructosovorans JJ] Length = 797 Score = 38.1 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 27/92 (29%), Gaps = 19/92 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC + I + G R LT Sbjct: 89 CNLAC--------RHCLFC------SGPAATRELSTATALSRIAQARALG---CRVFALT 131 Query: 92 GGEPLLQVDVPLI--QALNKRGFEIAVETNGT 121 GGEP L I AL + V TNGT Sbjct: 132 GGEPFLHPGFEAILDAALADPAAHVVVLTNGT 163 >gi|240102218|ref|YP_002958526.1| Anaerobic ribonucleotide triphosphate reductase activating enzyme (NrdG) [Thermococcus gammatolerans EJ3] gi|239909771|gb|ACS32662.1| Anaerobic ribonucleotide triphosphate reductase activating enzyme (NrdG) [Thermococcus gammatolerans EJ3] Length = 246 Score = 38.1 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 22/95 (23%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ--LADLIEEQWITGEKEGR 86 GCNL +C FC + +D+ L D +E + Sbjct: 24 LCGCNL-----------RCPFC---HNWRIAEGLDCFPLDEKALLDELEASAFLIDYFH- 68 Query: 87 YCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETN 119 +TGGEPL+Q L + I++ TN Sbjct: 69 ---VTGGEPLVQWRELGSLFAGVKLLDVPISLNTN 100 >gi|160879324|ref|YP_001558292.1| glycyl-radical activating family protein [Clostridium phytofermentans ISDg] gi|160427990|gb|ABX41553.1| glycyl-radical enzyme activating protein family [Clostridium phytofermentans ISDg] Length = 263 Score = 38.1 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 26/107 (24%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC-----------DTDFVGIQGTKGGRYNVDQLADL 73 VF GC + +CR+C G G V ++ + Sbjct: 28 VF--LKGC-----------AFRCRWCCNPESQEHEIQTMKVQGKDKIIGTDVTVSEVLEE 74 Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 + + ++ G L+GGE L Q + L+ A + G A+E+ Sbjct: 75 VLKDRNYYQRSGGGVTLSGGEALCQPEFTNHLLHACKEEGLHTAMES 121 >gi|293375956|ref|ZP_06622216.1| radical SAM domain protein [Turicibacter sanguinis PC909] gi|325841962|ref|ZP_08167539.1| radical SAM domain protein [Turicibacter sp. HGF1] gi|292645393|gb|EFF63443.1| radical SAM domain protein [Turicibacter sanguinis PC909] gi|325489795|gb|EGC92150.1| radical SAM domain protein [Turicibacter sp. HGF1] Length = 291 Score = 38.1 bits (88), Expect = 0.89, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 61/185 (32%), Gaps = 35/185 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C FC + G G N D +++E + + Sbjct: 15 CNL-----------KCDFCPSA---TLGRNGKVMNEDDFKHILKEVKPYTNYLYFHLL-- 58 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142 GEP L + ++ ++ G ++ + TNG T+ + I S Sbjct: 59 -GEPFLNPRIGRFLEMSHEAGIQVNLTTNGVLIGKVKETLIQSPALRQINFS--VHSFEA 115 Query: 143 IKGGQELKLVFPQVN--VSPENYIGFDFERFSLQPMDGPFLEENTNL---AISYCFQ--N 195 + Q LK Q+ + + + L MDG L+ L + + + Sbjct: 116 NESTQTLKDYLMQIASFIDEIQAVRPVYCNLRLWNMDGEALQAKNTLNQQILDLIEEAFH 175 Query: 196 PKWRL 200 +RL Sbjct: 176 LPYRL 180 >gi|116748754|ref|YP_845441.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116697818|gb|ABK17006.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB] Length = 470 Score = 38.1 bits (88), Expect = 0.89, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 36/107 (33%), Gaps = 21/107 (19%) Query: 30 SGCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE 75 GC G D R C +C + ++ L + E Sbjct: 76 QGCPKDCGLCPDHRQQTCTALIEVTHRCDLSCAYC---YADSGTADFPDPDLYALRCMFE 132 Query: 76 EQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120 G + L+GGEP ++ D+P +I GF I V TNG Sbjct: 133 RLLRAGNRC--NIQLSGGEPTIREDLPDIIALGRSLGFSFIQVNTNG 177 >gi|296447401|ref|ZP_06889327.1| molybdenum cofactor biosynthesis protein A [Methylosinus trichosporium OB3b] gi|296255104|gb|EFH02205.1| molybdenum cofactor biosynthesis protein A [Methylosinus trichosporium OB3b] Length = 360 Score = 38.1 bits (88), Expect = 0.90, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 10/87 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C ++ + + +++L L G ++ R +TGGEPL++ D Sbjct: 48 DRCDFRCVYCMSEHMEFL-PRRDLLTLEELDRLCTAFIERGTRKLR---ITGGEPLMRRD 103 Query: 101 V-PLIQAL---NKRGF--EIAVETNGT 121 + L + L G E+ + TNG+ Sbjct: 104 ISSLFRRLSRHLASGLLDELTLTTNGS 130 >gi|270264732|ref|ZP_06192997.1| hypothetical protein SOD_i01490 [Serratia odorifera 4Rx13] gi|270041415|gb|EFA14514.1| hypothetical protein SOD_i01490 [Serratia odorifera 4Rx13] Length = 398 Score = 38.1 bits (88), Expect = 0.90, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I +TGE+ V+ G Sbjct: 132 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALKVTGERPITNVVMMG 191 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL ++ VP ++ L+ GF + + T+G + + D I V Sbjct: 192 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 242 >gi|260459420|ref|ZP_05807675.1| molybdenum cofactor biosynthesis protein A [Mesorhizobium opportunistum WSM2075] gi|259034974|gb|EEW36230.1| molybdenum cofactor biosynthesis protein A [Mesorhizobium opportunistum WSM2075] Length = 331 Score = 38.1 bits (88), Expect = 0.90, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 64/170 (37%), Gaps = 32/170 (18%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ + ++ L +L + EK R LTGGEPL+ Sbjct: 20 DRCDFRCTYCMAEDMAFL-------PKKDLLSLEELDRLCTVFVEKGVRRLRLTGGEPLV 72 Query: 98 QVDV-PLIQALNKRGFEIAVE-----TNG-------TIEPPQGIDWICVS------PKAG 138 + ++ L++ L++ A+E TNG T G+ + VS K Sbjct: 73 RKNIMHLVRQLSRHLESGALEELTLTTNGSQLARFATELADCGVKRVNVSLDTLDADKFH 132 Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 KI L V ++ + + +L+ + L E A Sbjct: 133 ---KITRWGHLDKVMAGIDAAQAAGLKVKLNAVALKDFNDAELPEMMRWA 179 >gi|157364470|ref|YP_001471237.1| radical SAM domain-containing protein [Thermotoga lettingae TMO] gi|157315074|gb|ABV34173.1| Radical SAM domain protein [Thermotoga lettingae TMO] Length = 310 Score = 38.1 bits (88), Expect = 0.90, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 20/100 (20%) Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72 + GE G +F FSGCNL +C +C + Q G + ++LA+ Sbjct: 54 ISGE---TGAGTIF--FSGCNL-----------RCVYC-QNMNFSQKADGVEISTEELAE 96 Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF 112 + + K T P L + + + GF Sbjct: 97 IFLDLQSHNAKCLNLVTPT---PHLPFIIEALSIAKREGF 133 >gi|157371847|ref|YP_001479836.1| ribosomal RNA large subunit methyltransferase N [Serratia proteamaculans 568] gi|205829876|sp|A8GHW8|RLMN_SERP5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157323611|gb|ABV42708.1| radical SAM enzyme, Cfr family [Serratia proteamaculans 568] Length = 398 Score = 38.1 bits (88), Expect = 0.90, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I +TGE+ V+ G Sbjct: 132 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALKVTGERPITNVVMMG 191 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL ++ VP ++ L+ GF + + T+G + + D I V Sbjct: 192 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 242 >gi|294993384|ref|ZP_06799075.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis 210] Length = 136 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 17/83 (20%) Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQAL-----NKRGFE-IAVET 118 +V +++ +++ G + R +TGGEPL++ D+P +++ L G +A+ T Sbjct: 16 SVKEISAIVDVFLSVGVSKVR---ITGGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITT 72 Query: 119 NGTIEPP-------QGIDWICVS 134 NG + G+ I VS Sbjct: 73 NGVLLADRVDGLKAAGMKRITVS 95 >gi|256821125|ref|YP_003142324.1| Radical SAM domain-containing protein [Anaerococcus prevotii DSM 20548] gi|256799105|gb|ACV29759.1| Radical SAM domain protein [Anaerococcus prevotii DSM 20548] Length = 728 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 33/105 (31%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL- 90 CNL +C +C ++ + + + + D I+ + +L Sbjct: 32 CNL-----------RCSYC---YITHKSSN-KKMSFDVAKKFIDYVLSEEMIRPKGVILD 76 Query: 91 -TGGEPLLQVDVPLIQALNKR--------------GFEIAVETNG 120 GGEPLL ++ LI + + I + TNG Sbjct: 77 FIGGEPLL--EIKLIDQICDYFKRKAYLLKDERYWDYRINITTNG 119 >gi|215428561|ref|ZP_03426480.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis T92] gi|215447391|ref|ZP_03434143.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis T85] gi|308406054|ref|ZP_07494957.2| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu012] gi|308364661|gb|EFP53512.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium tuberculosis SUMu012] Length = 315 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 17/83 (20%) Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQAL-----NKRGFE-IAVET 118 +V +++ +++ G + R +TGGEPL++ D+P +++ L G +A+ T Sbjct: 16 SVKEISAIVDVFLSVGVSKVR---ITGGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITT 72 Query: 119 NGTIEPP-------QGIDWICVS 134 NG + G+ I VS Sbjct: 73 NGVLLADRVDGLKAAGMKRITVS 95 >gi|215412973|ref|ZP_03421674.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis 94_M4241A] Length = 315 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 17/83 (20%) Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQAL-----NKRGFE-IAVET 118 +V +++ +++ G + R +TGGEPL++ D+P +++ L G +A+ T Sbjct: 16 SVKEISAIVDVFLSVGVSKVR---ITGGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITT 72 Query: 119 NGTIEPP-------QGIDWICVS 134 NG + G+ I VS Sbjct: 73 NGVLLADRVDGLKAAGMKRITVS 95 >gi|111219790|ref|YP_710584.1| putative tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein [Frankia alni ACN14a] gi|111147322|emb|CAJ58972.1| putative tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein [Frankia alni ACN14a] Length = 424 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Query: 94 EPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134 EPL D I L +RG + + TNG + P+ IDWI S Sbjct: 77 EPLAAPDWQDTISFLQRRGIAVTLVTNGGLLTPESIDWIVAS 118 >gi|75910829|ref|YP_325125.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Anabaena variabilis ATCC 29413] gi|75704554|gb|ABA24230.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Anabaena variabilis ATCC 29413] Length = 207 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 20/96 (20%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 G AV GC +C C + + L+E+ Sbjct: 35 GCRAV-VWVQGCP-----------RECPGC----FNPDSWTFEINQLVSVDSLVEQILSK 78 Query: 81 GEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114 + +G +GGEP Q L + L G + Sbjct: 79 PQNQG--VTFSGGEPFYQATALAELARKLKAAGLSV 112 >gi|78221524|ref|YP_383271.1| radical SAM:molybdenum cofactor synthesis-like [Geobacter metallireducens GS-15] gi|78192779|gb|ABB30546.1| GTP cyclohydrolase subunit MoaA [Geobacter metallireducens GS-15] Length = 326 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 6/100 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +CR+C + G + ++L+ + G ++ R +TG Sbjct: 12 NYLRLSVTDRCNLRCRYCMPAEGVEMLSHGEILSYEELSRIARAAVAIGIEKIR---ITG 68 Query: 93 GEPLLQVDV-PLIQALNKR-GFE-IAVETNGTIEPPQGID 129 GEPL++ + P + + G + + TNG + P D Sbjct: 69 GEPLVRRGIVPFLAGIAALPGLRQLVLTTNGILLPEMAAD 108 >gi|18978344|ref|NP_579701.1| hypothetical protein PF1972 [Pyrococcus furiosus DSM 3638] gi|18894176|gb|AAL82096.1| hypothetical protein PF1972 [Pyrococcus furiosus DSM 3638] Length = 238 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 21/107 (19%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCNL +C FC ++ QG + + ++L +EE + Sbjct: 24 LCGCNL-----------RCPFC-HNWKLAQGMECFKLEKEELIAEVEENSYLVDYFH--- 68 Query: 89 VLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQG--IDWI 131 +TGGEPL+Q L++ + + +++ +N T+ P ID + Sbjct: 69 -VTGGEPLIQWREFQELLREVREY-LPVSLNSNLTLVKPLEKIIDLV 113 >gi|228934843|ref|ZP_04097674.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824743|gb|EEM70544.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 307 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ +P LI+ LNK G E I + Sbjct: 14 SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPQLIERLNKIDGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVS 134 TNG++ D + VS Sbjct: 71 TTNGSLLKKFAPDLYKAGLSRVTVS 95 >gi|228947184|ref|ZP_04109478.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228812431|gb|EEM58758.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 307 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ +P LI+ LNK G E I + Sbjct: 14 SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPQLIERLNKIDGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVS 134 TNG++ D + VS Sbjct: 71 TTNGSLLKKFAPDLYKAGLSRVTVS 95 >gi|229092533|ref|ZP_04223689.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock3-42] gi|228690820|gb|EEL44595.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock3-42] Length = 307 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ +P LI+ LNK G E I + Sbjct: 14 SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPQLIERLNKIDGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVS 134 TNG++ D + VS Sbjct: 71 TTNGSLLKKFAPDLYKAGLSRVTVS 95 >gi|229123083|ref|ZP_04252290.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus 95/8201] gi|228660377|gb|EEL16010.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus 95/8201] Length = 307 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ +P LI+ LNK G E I + Sbjct: 14 SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPQLIERLNKIDGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVS 134 TNG++ D + VS Sbjct: 71 TTNGSLLKKFAPDLYKAGLSRVTVS 95 >gi|229162400|ref|ZP_04290363.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus R309803] gi|228621084|gb|EEK77947.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus R309803] Length = 307 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ +P LI+ LNK G E I + Sbjct: 14 SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPQLIERLNKIDGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVS 134 TNG++ D + VS Sbjct: 71 TTNGSLLKKFAPDLYKAGLSRVTVS 95 >gi|229185802|ref|ZP_04312977.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BGSC 6E1] gi|228597680|gb|EEK55325.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BGSC 6E1] Length = 307 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ +P LI+ LNK G E I + Sbjct: 14 SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPQLIERLNKIDGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVS 134 TNG++ D + VS Sbjct: 71 TTNGSLLKKFAPDLYKAGLSRVTVS 95 >gi|229197678|ref|ZP_04324398.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1293] gi|228585755|gb|EEK43853.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1293] Length = 307 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ +P LI+ LNK G E I + Sbjct: 14 SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPQLIERLNKIDGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVS 134 TNG++ D + VS Sbjct: 71 TTNGSLLKKFAPDLYKAGLSRVTVS 95 >gi|218887985|ref|YP_002437306.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758939|gb|ACL09838.1| Radical SAM domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 359 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 13/108 (12%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 G C L + + C+ C + G ++ ++ LI+ Sbjct: 8 GTPT-------CKLIAWEVTRSCNLACKHC--RAEAHEEPYPGEFSTEEAKALIDTFPQV 58 Query: 81 GEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127 G + TGG+P+++ DV LI G + NGT+ P+ Sbjct: 59 G---NPIIIFTGGDPMMRADVYELIAYATGLGLRCVMSPNGTLITPET 103 >gi|157146410|ref|YP_001453729.1| pyruvate formate lyase-activating enzyme 1 [Citrobacter koseri ATCC BAA-895] gi|157083615|gb|ABV13293.1| hypothetical protein CKO_02169 [Citrobacter koseri ATCC BAA-895] Length = 255 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC +C +C DT G V+ L + G Sbjct: 36 FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 80 Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 +GGE +LQ + +A K ++TNG Sbjct: 81 GGVTASGGEAILQAEFVRDWFRACKKESIHTCLDTNG 117 >gi|24373955|ref|NP_717998.1| radical activating enzyme [Shewanella oneidensis MR-1] gi|24348393|gb|AAN55442.1|AE015681_6 radical activating enzyme [Shewanella oneidensis MR-1] Length = 286 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 13/103 (12%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVG---IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 N + + +C CDT K RY V+++ ++ Q Sbjct: 60 NANNKHQTHWDKDRCSQCDTCLAVCPQQANPKVTRYTVEEILAILHHQR----HFINGIT 115 Query: 90 LTGGEPLLQV--DVPLIQALNK----RGFEIAVETNGTIEPPQ 126 ++GGE LQ+ + L +A+ ++TNG++ Sbjct: 116 VSGGEASLQLPFIIELFKAIKASTSLSQLTCMLDTNGSLSLTG 158 >gi|332087964|gb|EGI93089.1| hypothetical protein SB521682_2897 [Shigella boydii 5216-82] Length = 384 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL ++ VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N R L+ + I Y Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281 >gi|312973242|ref|ZP_07787414.1| UPF0063 protein yfgB [Escherichia coli 1827-70] gi|310331837|gb|EFP99072.1| UPF0063 protein yfgB [Escherichia coli 1827-70] Length = 339 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 73 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 132 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL ++ VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 133 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 190 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N R L+ + I Y Sbjct: 191 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 236 >gi|300920672|ref|ZP_07137083.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1] gi|300412353|gb|EFJ95663.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1] Length = 384 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL ++ VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N R L+ + I Y Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281 >gi|297519092|ref|ZP_06937478.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli OP50] Length = 330 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL ++ VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N R L+ + I Y Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281 >gi|294053874|ref|YP_003547532.1| molybdenum cofactor biosynthesis protein A [Coraliomargarita akajimensis DSM 45221] gi|293613207|gb|ADE53362.1| molybdenum cofactor biosynthesis protein A [Coraliomargarita akajimensis DSM 45221] Length = 335 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 22/93 (23%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D +V ++ + R++ +L ++ G ++ R LTG Sbjct: 19 DRCNLRCTYCMPKEVFGPD--YVFLKKQEWLRFS--ELDAVVAAFVRLGVRKLR---LTG 71 Query: 93 GEPLLQV-DVPLIQALNKRGFE----IAVETNG 120 GEPLL+ + I+ L + FE +A+ TNG Sbjct: 72 GEPLLRPGLLKYIEGLRR--FEPIEDVALTTNG 102 >gi|291546983|emb|CBL20091.1| glycyl-radical enzyme activating protein family [Ruminococcus sp. SR1/5] Length = 263 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 27/120 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC-----------DTDFVGIQGTKGGRYNVDQLADL 73 VF GC +CR+C + +G G V ++ + Sbjct: 28 VF--LKGC-----------VLRCRWCCNPESQEYRIQNMKVLGEDKVIGRDVTVREMIEE 74 Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 +E+ + G L+GGE + Q D L++A +RG AVE + P + I+ + Sbjct: 75 VEKDRAYYYRSGGGITLSGGECMCQADFSRDLLRAAKERGINTAVE-SMACAPWEKIEQV 133 >gi|293415781|ref|ZP_06658424.1| cfr family radical SAM enzyme [Escherichia coli B185] gi|291433429|gb|EFF06408.1| cfr family radical SAM enzyme [Escherichia coli B185] Length = 384 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL ++ VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N R L+ + I Y Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281 >gi|288957562|ref|YP_003447903.1| molybdenum cofactor biosynthesis protein A [Azospirillum sp. B510] gi|288909870|dbj|BAI71359.1| molybdenum cofactor biosynthesis protein A [Azospirillum sp. B510] Length = 350 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 26/96 (27%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ K +++L L G ++ R LTGGEPL+ Sbjct: 38 DRCDLRCVYCMAEDMSFL----PKAEVLTLEELDRLCSAFVKLGTRKLR---LTGGEPLV 90 Query: 98 QVDVP-LIQALNKRGFEIAVE----------TNGTI 122 + DV LI++L + +E TNGT+ Sbjct: 91 RRDVMRLIRSLGR-----HIESGDLDELTLTTNGTM 121 >gi|288818491|ref|YP_003432839.1| molybdenum cofactor biosynthesis protein A [Hydrogenobacter thermophilus TK-6] gi|288787891|dbj|BAI69638.1| molybdenum cofactor biosynthesis protein A [Hydrogenobacter thermophilus TK-6] gi|308752081|gb|ADO45564.1| molybdenum cofactor biosynthesis protein A [Hydrogenobacter thermophilus TK-6] Length = 334 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 5/83 (6%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C+FC R + ++ ++ + R +TGGEPL++ Sbjct: 19 DRCNFRCQFC--MPENQDYEFYSRSEILTFEEIERIVRVSTKLGVRKVRITGGEPLVRKH 76 Query: 101 VP-LIQAL-NKRGFE-IAVETNG 120 + LI L + G I++ TNG Sbjct: 77 IENLIHLLSHVDGLHDISMTTNG 99 >gi|281601919|gb|ADA74903.1| protein yfgB [Shigella flexneri 2002017] Length = 340 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 74 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 133 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL ++ VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 134 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 191 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N R L+ + I Y Sbjct: 192 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 237 >gi|262041408|ref|ZP_06014612.1| arylsulfatase-activating protein AtsB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041262|gb|EEW42329.1| arylsulfatase-activating protein AtsB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 395 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 26/102 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC--V 89 CNL CR+C + + + +L I R V Sbjct: 35 CNL-----------ACRYC---YYPQDEKPVNKMDDARLEQFIRRYIAAQPAGAREINFV 80 Query: 90 LTGGEPLLQVDVPLIQ---ALNKR----GFEI--AVETNGTI 122 GGEPLL + + AL R G I +++TNGT+ Sbjct: 81 WQGGEPLL-AGLSFYKKALALQARYAPDGVTISNSLQTNGTL 121 >gi|260869206|ref|YP_003235608.1| putative enzyme [Escherichia coli O111:H- str. 11128] gi|257765562|dbj|BAI37057.1| predicted enzyme [Escherichia coli O111:H- str. 11128] gi|323177359|gb|EFZ62947.1| hypothetical protein ECOK1180_3845 [Escherichia coli 1180] Length = 384 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL ++ VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N R L+ + I Y Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281 >gi|256822556|ref|YP_003146519.1| molybdenum cofactor biosynthesis protein A [Kangiella koreensis DSM 16069] gi|256796095|gb|ACV26751.1| molybdenum cofactor biosynthesis protein A [Kangiella koreensis DSM 16069] Length = 332 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 13/88 (14%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR + +C +C D F+ K ++L + + G + R LTGGEPL+ Sbjct: 24 DRCNFRCVYCMAEDMTFL----PKQRLLCYEELTQISQAFTELGVNKIR---LTGGEPLV 76 Query: 98 -QVDVPLIQALNKRG--FEIAVETNGTI 122 + L L + +A+ TNG++ Sbjct: 77 RHDIIKLTSNLGQLDGLKNLAITTNGSM 104 >gi|209763358|gb|ACI79991.1| hypothetical protein ECs3379 [Escherichia coli] gi|320646304|gb|EFX15231.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H- str. 493-89] gi|320651809|gb|EFX20189.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H- str. H 2687] Length = 384 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL ++ VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N R L+ + I Y Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281 >gi|218548046|ref|YP_002381837.1| ribosomal RNA large subunit methyltransferase N [Escherichia fergusonii ATCC 35469] gi|254807182|sp|B7LKC1|RLMN_ESCF3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|218355587|emb|CAQ88198.1| putative Fe-S containing enzyme [Escherichia fergusonii ATCC 35469] gi|324113011|gb|EGC06987.1| cfr family protein radical SAM enzyme [Escherichia fergusonii B253] gi|325496450|gb|EGC94309.1| ribosomal RNA large subunit methyltransferase N [Escherichia fergusonii ECD227] Length = 384 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL ++ VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N R L+ + I Y Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281 >gi|170767629|ref|ZP_02902082.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627] gi|170123963|gb|EDS92894.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627] Length = 384 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL ++ VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N R L+ + I Y Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281 >gi|281355197|ref|ZP_06241691.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Victivallis vadensis ATCC BAA-548] gi|281318077|gb|EFB02097.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Victivallis vadensis ATCC BAA-548] Length = 172 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 21/93 (22%) Query: 26 FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC C+ C G G +Y+V+++ I + Sbjct: 23 FV--QGCP-----------HHCKGCHNPETWAFGE-GCKYSVEEIHTRIRRNPLL----- 63 Query: 86 RYCVLTGGEPLLQV--DVPLIQALNKRGFEIAV 116 R +GGEP Q L + + G+E+AV Sbjct: 64 RGVTFSGGEPFSQAAELARLGRLVKADGYELAV 96 >gi|24113846|ref|NP_708356.1| hypothetical protein SF2563 [Shigella flexneri 2a str. 301] gi|30063909|ref|NP_838080.1| hypothetical protein S2735 [Shigella flexneri 2a str. 2457T] gi|110806448|ref|YP_689968.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri 5 str. 8401] gi|81723142|sp|Q83K42|RLMN_SHIFL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123342626|sp|Q0T202|RLMN_SHIF8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|24052937|gb|AAN44063.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30042165|gb|AAP17890.1| hypothetical protein S2735 [Shigella flexneri 2a str. 2457T] gi|110615996|gb|ABF04663.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|313651003|gb|EFS15403.1| UPF0063 protein yfgB [Shigella flexneri 2a str. 2457T] Length = 384 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL ++ VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N R L+ + I Y Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281 >gi|15832633|ref|NP_311406.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H7 str. Sakai] gi|168748424|ref|ZP_02773446.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4113] gi|168756289|ref|ZP_02781296.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4401] gi|168761127|ref|ZP_02786134.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4501] gi|168768609|ref|ZP_02793616.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4486] gi|168773569|ref|ZP_02798576.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4196] gi|168778483|ref|ZP_02803490.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4076] gi|168787863|ref|ZP_02812870.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC869] gi|168798888|ref|ZP_02823895.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC508] gi|195936659|ref|ZP_03082041.1| hypothetical protein EscherichcoliO157_09385 [Escherichia coli O157:H7 str. EC4024] gi|208808631|ref|ZP_03250968.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4206] gi|208814380|ref|ZP_03255709.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4045] gi|208820776|ref|ZP_03261096.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4042] gi|209400754|ref|YP_002271987.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4115] gi|217327135|ref|ZP_03443218.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. TW14588] gi|254794463|ref|YP_003079300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H7 str. TW14359] gi|261223051|ref|ZP_05937332.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK2000] gi|261259398|ref|ZP_05951931.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK966] gi|291283738|ref|YP_003500556.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str. CB9615] gi|205829862|sp|Q8XAA4|RLMN_ECO57 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807175|sp|B5Z0Y6|RLMN_ECO5E RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|13362849|dbj|BAB36802.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187770632|gb|EDU34476.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4196] gi|188017093|gb|EDU55215.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4113] gi|189003147|gb|EDU72133.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4076] gi|189356574|gb|EDU74993.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4401] gi|189362276|gb|EDU80695.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4486] gi|189368421|gb|EDU86837.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4501] gi|189372335|gb|EDU90751.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC869] gi|189378598|gb|EDU97014.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC508] gi|208728432|gb|EDZ78033.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4206] gi|208735657|gb|EDZ84344.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4045] gi|208740899|gb|EDZ88581.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4042] gi|209162154|gb|ACI39587.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4115] gi|209763360|gb|ACI79992.1| hypothetical protein ECs3379 [Escherichia coli] gi|209763362|gb|ACI79993.1| hypothetical protein ECs3379 [Escherichia coli] gi|209763364|gb|ACI79994.1| hypothetical protein ECs3379 [Escherichia coli] gi|209763366|gb|ACI79995.1| hypothetical protein ECs3379 [Escherichia coli] gi|217319502|gb|EEC27927.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. TW14588] gi|254593863|gb|ACT73224.1| predicted enzyme [Escherichia coli O157:H7 str. TW14359] gi|290763611|gb|ADD57572.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str. CB9615] gi|320188850|gb|EFW63509.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H7 str. EC1212] gi|320640861|gb|EFX10349.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H7 str. G5101] gi|320657195|gb|EFX25004.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662801|gb|EFX30133.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O55:H7 str. USDA 5905] gi|320667605|gb|EFX34520.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H7 str. LSU-61] gi|326340315|gb|EGD64119.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H7 str. 1125] gi|326344999|gb|EGD68743.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H7 str. 1044] Length = 384 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL ++ VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N R L+ + I Y Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281 >gi|194432102|ref|ZP_03064391.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012] gi|194419631|gb|EDX35711.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012] gi|332089738|gb|EGI94839.1| hypothetical protein SD15574_2919 [Shigella dysenteriae 155-74] Length = 384 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL ++ VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N R L+ + I Y Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281 >gi|193068396|ref|ZP_03049359.1| radical SAM enzyme, Cfr family [Escherichia coli E110019] gi|192958348|gb|EDV88788.1| radical SAM enzyme, Cfr family [Escherichia coli E110019] Length = 384 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL ++ VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N R L+ + I Y Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281 >gi|157161992|ref|YP_001459310.1| hypothetical protein EcHS_A2668 [Escherichia coli HS] gi|205829751|sp|A8A323|RLMN_ECOHS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157067672|gb|ABV06927.1| radical SAM enzyme, Cfr family [Escherichia coli HS] Length = 384 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL ++ VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N R L+ + I Y Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281 >gi|16130442|ref|NP_417012.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Escherichia coli str. K-12 substr. MG1655] gi|74313043|ref|YP_311462.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei Ss046] gi|82544966|ref|YP_408913.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii Sb227] gi|82777902|ref|YP_404251.1| hypothetical protein SDY_2713 [Shigella dysenteriae Sd197] gi|89109323|ref|AP_003103.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110] gi|91211843|ref|YP_541829.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli UTI89] gi|110642682|ref|YP_670412.1| hypothetical protein ECP_2522 [Escherichia coli 536] gi|117624746|ref|YP_853659.1| hypothetical protein APECO1_4007 [Escherichia coli APEC O1] gi|157157838|ref|YP_001463839.1| hypothetical protein EcE24377A_2801 [Escherichia coli E24377A] gi|170019200|ref|YP_001724154.1| hypothetical protein EcolC_1160 [Escherichia coli ATCC 8739] gi|170082127|ref|YP_001731447.1| hypothetical protein ECDH10B_2683 [Escherichia coli str. K-12 substr. DH10B] gi|170683806|ref|YP_001744705.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli SMS-3-5] gi|187731368|ref|YP_001881308.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii CDC 3083-94] gi|188491812|ref|ZP_02999082.1| radical SAM enzyme, Cfr family [Escherichia coli 53638] gi|191167679|ref|ZP_03029488.1| radical SAM enzyme, Cfr family [Escherichia coli B7A] gi|191172618|ref|ZP_03034157.1| radical SAM enzyme, Cfr family [Escherichia coli F11] gi|193064109|ref|ZP_03045194.1| radical SAM enzyme, Cfr family [Escherichia coli E22] gi|194427328|ref|ZP_03059878.1| radical SAM enzyme, Cfr family [Escherichia coli B171] gi|194437563|ref|ZP_03069659.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1] gi|209919994|ref|YP_002294078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli SE11] gi|215487867|ref|YP_002330298.1| hypothetical protein E2348C_2800 [Escherichia coli O127:H6 str. E2348/69] gi|218555042|ref|YP_002387955.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli IAI1] gi|218559443|ref|YP_002392356.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli S88] gi|218690637|ref|YP_002398849.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli ED1a] gi|218696144|ref|YP_002403811.1| hypothetical protein EC55989_2802 [Escherichia coli 55989] gi|218701027|ref|YP_002408656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli IAI39] gi|237705027|ref|ZP_04535508.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp. 3_2_53FAA] gi|238901682|ref|YP_002927478.1| putative enzyme [Escherichia coli BW2952] gi|253772589|ref|YP_003035420.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162491|ref|YP_003045599.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli B str. REL606] gi|256017335|ref|ZP_05431200.1| hypothetical protein ShiD9_00370 [Shigella sp. D9] gi|256021797|ref|ZP_05435662.1| hypothetical protein E4_00375 [Escherichia sp. 4_1_40B] gi|260845147|ref|YP_003222925.1| putative enzyme [Escherichia coli O103:H2 str. 12009] gi|260856611|ref|YP_003230502.1| putative enzyme [Escherichia coli O26:H11 str. 11368] gi|293410931|ref|ZP_06654507.1| cfr family radical SAM enzyme [Escherichia coli B354] gi|293446870|ref|ZP_06663292.1| cfr family radical SAM enzyme [Escherichia coli B088] gi|300817713|ref|ZP_07097928.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1] gi|300820813|ref|ZP_07100963.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7] gi|300904309|ref|ZP_07122166.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1] gi|300927120|ref|ZP_07142868.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1] gi|300930157|ref|ZP_07145578.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1] gi|300940232|ref|ZP_07154830.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1] gi|300951778|ref|ZP_07165593.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1] gi|300958853|ref|ZP_07170961.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1] gi|300998073|ref|ZP_07181933.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1] gi|301022377|ref|ZP_07186264.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1] gi|301024749|ref|ZP_07188389.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1] gi|301302874|ref|ZP_07209002.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1] gi|301330392|ref|ZP_07223034.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1] gi|301648272|ref|ZP_07248015.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1] gi|306814413|ref|ZP_07448575.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli NC101] gi|307139152|ref|ZP_07498508.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli H736] gi|307312488|ref|ZP_07592121.1| radical SAM enzyme, Cfr family [Escherichia coli W] gi|309784732|ref|ZP_07679365.1| UPF0063 protein yfgB [Shigella dysenteriae 1617] gi|309794436|ref|ZP_07688859.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7] gi|312965433|ref|ZP_07779665.1| UPF0063 protein yfgB [Escherichia coli 2362-75] gi|331643137|ref|ZP_08344272.1| radical SAM enzyme, Cfr family [Escherichia coli H736] gi|331648214|ref|ZP_08349304.1| radical SAM enzyme, Cfr family [Escherichia coli M605] gi|331653945|ref|ZP_08354946.1| radical SAM enzyme, Cfr family [Escherichia coli M718] gi|331658662|ref|ZP_08359606.1| radical SAM enzyme, Cfr family [Escherichia coli TA206] gi|331664080|ref|ZP_08364990.1| radical SAM enzyme, Cfr family [Escherichia coli TA143] gi|331669263|ref|ZP_08370111.1| radical SAM enzyme, Cfr family [Escherichia coli TA271] gi|331673972|ref|ZP_08374735.1| radical SAM enzyme, Cfr family [Escherichia coli TA280] gi|331678508|ref|ZP_08379183.1| radical SAM enzyme, Cfr family [Escherichia coli H591] gi|331684165|ref|ZP_08384761.1| radical SAM enzyme, Cfr family [Escherichia coli H299] gi|549552|sp|P36979|RLMN_ECOLI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123084401|sp|Q1R8L6|RLMN_ECOUT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123147826|sp|Q0TEW8|RLMN_ECOL5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123728531|sp|Q32D45|RLMN_SHIDS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123755559|sp|Q31XX3|RLMN_SHIBS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123773477|sp|Q3YZ35|RLMN_SHISS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829749|sp|A7ZPW0|RLMN_ECO24 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829750|sp|B1XAZ2|RLMN_ECODH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829752|sp|A1AE55|RLMN_ECOK1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829753|sp|B1IWE4|RLMN_ECOLC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829754|sp|B1LNH2|RLMN_ECOSM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829888|sp|B2TXU2|RLMN_SHIB3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807172|sp|B7UGW3|RLMN_ECO27 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807173|sp|B7MI02|RLMN_ECO45 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807174|sp|B7LDA9|RLMN_ECO55 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807176|sp|B7NRG7|RLMN_ECO7I RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807177|sp|B7N304|RLMN_ECO81 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807178|sp|B7M7M1|RLMN_ECO8A RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807180|sp|B6I589|RLMN_ECOSE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|259491986|sp|C4ZX92|RLMN_ECOBW RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|493519|gb|AAA21359.1| unknown [Escherichia coli] gi|1788865|gb|AAC75570.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Escherichia coli str. K-12 substr. MG1655] gi|1799916|dbj|BAA16404.1| hypothetical protein [Escherichia coli str. K12 substr. W3110] gi|73856520|gb|AAZ89227.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81242050|gb|ABB62760.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|81246377|gb|ABB67085.1| conserved hypothetical protein [Shigella boydii Sb227] gi|91073417|gb|ABE08298.1| hypothetical protein UTI89_C2838 [Escherichia coli UTI89] gi|110344274|gb|ABG70511.1| hypothetical protein YfgB (putative Fe-S-cluster redox enzyme) [Escherichia coli 536] gi|115513870|gb|ABJ01945.1| putative Fe-S-cluster redox enzyme [Escherichia coli APEC O1] gi|157079868|gb|ABV19576.1| radical SAM enzyme, Cfr family [Escherichia coli E24377A] gi|169754128|gb|ACA76827.1| radical SAM enzyme, Cfr family [Escherichia coli ATCC 8739] gi|169889962|gb|ACB03669.1| predicted enzyme [Escherichia coli str. K-12 substr. DH10B] gi|170521524|gb|ACB19702.1| radical SAM enzyme, Cfr family [Escherichia coli SMS-3-5] gi|187428360|gb|ACD07634.1| radical SAM enzyme, Cfr family [Shigella boydii CDC 3083-94] gi|188487011|gb|EDU62114.1| radical SAM enzyme, Cfr family [Escherichia coli 53638] gi|190902278|gb|EDV62018.1| radical SAM enzyme, Cfr family [Escherichia coli B7A] gi|190907091|gb|EDV66691.1| radical SAM enzyme, Cfr family [Escherichia coli F11] gi|192929344|gb|EDV82953.1| radical SAM enzyme, Cfr family [Escherichia coli E22] gi|194414649|gb|EDX30921.1| radical SAM enzyme, Cfr family [Escherichia coli B171] gi|194423369|gb|EDX39360.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1] gi|209913253|dbj|BAG78327.1| conserved hypothetical protein [Escherichia coli SE11] gi|215265939|emb|CAS10348.1| predicted enzyme [Escherichia coli O127:H6 str. E2348/69] gi|218352876|emb|CAU98675.1| putative Fe-S containing enzyme [Escherichia coli 55989] gi|218361810|emb|CAQ99409.1| putative Fe-S containing enzyme [Escherichia coli IAI1] gi|218366212|emb|CAR03960.1| putative Fe-S containing enzyme [Escherichia coli S88] gi|218371013|emb|CAR18841.1| putative Fe-S containing enzyme [Escherichia coli IAI39] gi|218428201|emb|CAV17847.1| putative Fe-S containing enzyme [Escherichia coli ED1a] gi|222034228|emb|CAP76969.1| UPF0063 protein yfgB [Escherichia coli LF82] gi|226901393|gb|EEH87652.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp. 3_2_53FAA] gi|238862352|gb|ACR64350.1| predicted enzyme [Escherichia coli BW2952] gi|242378115|emb|CAQ32888.1| 23S rRNA m[2]A2503 methyltransferase [Escherichia coli BL21(DE3)] gi|253323633|gb|ACT28235.1| radical SAM enzyme, Cfr family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974392|gb|ACT40063.1| predicted enzyme [Escherichia coli B str. REL606] gi|253978559|gb|ACT44229.1| predicted enzyme [Escherichia coli BL21(DE3)] gi|257755260|dbj|BAI26762.1| predicted enzyme [Escherichia coli O26:H11 str. 11368] gi|257760294|dbj|BAI31791.1| predicted enzyme [Escherichia coli O103:H2 str. 12009] gi|260448403|gb|ACX38825.1| radical SAM enzyme, Cfr family [Escherichia coli DH1] gi|281179571|dbj|BAI55901.1| conserved hypothetical protein [Escherichia coli SE15] gi|284922467|emb|CBG35554.1| radical SAM superfamily protein [Escherichia coli 042] gi|291323700|gb|EFE63128.1| cfr family radical SAM enzyme [Escherichia coli B088] gi|291471399|gb|EFF13883.1| cfr family radical SAM enzyme [Escherichia coli B354] gi|294492482|gb|ADE91238.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli IHE3034] gi|299881276|gb|EFI89487.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1] gi|300304052|gb|EFJ58572.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1] gi|300314505|gb|EFJ64289.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1] gi|300396418|gb|EFJ79956.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1] gi|300403741|gb|EFJ87279.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1] gi|300416890|gb|EFK00201.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1] gi|300448975|gb|EFK12595.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1] gi|300454928|gb|EFK18421.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1] gi|300461963|gb|EFK25456.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1] gi|300526566|gb|EFK47635.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7] gi|300529701|gb|EFK50763.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1] gi|300841809|gb|EFK69569.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1] gi|300843621|gb|EFK71381.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1] gi|301073659|gb|EFK88465.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1] gi|305851807|gb|EFM52259.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli NC101] gi|306907411|gb|EFN37915.1| radical SAM enzyme, Cfr family [Escherichia coli W] gi|307625927|gb|ADN70231.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli UM146] gi|308121892|gb|EFO59154.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7] gi|308927102|gb|EFP72576.1| UPF0063 protein yfgB [Shigella dysenteriae 1617] gi|309702849|emb|CBJ02180.1| radical SAM superfamily protein [Escherichia coli ETEC H10407] gi|312289853|gb|EFR17741.1| UPF0063 protein yfgB [Escherichia coli 2362-75] gi|312947094|gb|ADR27921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O83:H1 str. NRG 857C] gi|315061836|gb|ADT76163.1| radical SAM protein [Escherichia coli W] gi|315137141|dbj|BAJ44300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli DH1] gi|315256537|gb|EFU36505.1| radical SAM enzyme, Cfr family [Escherichia coli MS 85-1] gi|315288069|gb|EFU47469.1| radical SAM enzyme, Cfr family [Escherichia coli MS 110-3] gi|315300476|gb|EFU59705.1| radical SAM enzyme, Cfr family [Escherichia coli MS 16-3] gi|315615776|gb|EFU96408.1| UPF0063 protein yfgB [Escherichia coli 3431] gi|320175080|gb|EFW50193.1| Ribosomal RNA large subunit methyltransferase N [Shigella dysenteriae CDC 74-1112] gi|320180507|gb|EFW55438.1| Ribosomal RNA large subunit methyltransferase N [Shigella boydii ATCC 9905] gi|320185217|gb|EFW59997.1| Ribosomal RNA large subunit methyltransferase N [Shigella flexneri CDC 796-83] gi|320196354|gb|EFW70978.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli WV_060327] gi|320200081|gb|EFW74670.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli EC4100B] gi|323156172|gb|EFZ42331.1| hypothetical protein ECEPECA14_1949 [Escherichia coli EPECa14] gi|323159387|gb|EFZ45372.1| hypothetical protein ECE128010_4438 [Escherichia coli E128010] gi|323169039|gb|EFZ54716.1| hypothetical protein SS53G_0580 [Shigella sonnei 53G] gi|323170210|gb|EFZ55863.1| hypothetical protein ECLT68_5098 [Escherichia coli LT-68] gi|323184422|gb|EFZ69797.1| hypothetical protein ECOK1357_2143 [Escherichia coli 1357] gi|323188365|gb|EFZ73657.1| hypothetical protein ECRN5871_3471 [Escherichia coli RN587/1] gi|323377583|gb|ADX49851.1| radical SAM enzyme, Cfr family [Escherichia coli KO11] gi|323936410|gb|EGB32700.1| cfr family protein radical SAM enzyme [Escherichia coli E1520] gi|323941221|gb|EGB37406.1| cfr family protein radical SAM enzyme [Escherichia coli E482] gi|323944739|gb|EGB40806.1| cfr family protein radical SAM enzyme [Escherichia coli H120] gi|323949177|gb|EGB45068.1| cfr family protein radical SAM enzyme [Escherichia coli H252] gi|323955758|gb|EGB51516.1| cfr family protein radical SAM enzyme [Escherichia coli H263] gi|323961333|gb|EGB56945.1| cfr family protein radical SAM enzyme [Escherichia coli H489] gi|323967965|gb|EGB63377.1| cfr family protein radical SAM enzyme [Escherichia coli M863] gi|323971070|gb|EGB66318.1| cfr family protein radical SAM enzyme [Escherichia coli TA007] gi|323977300|gb|EGB72386.1| cfr family protein radical SAM enzyme [Escherichia coli TW10509] gi|324008525|gb|EGB77744.1| radical SAM enzyme, Cfr family [Escherichia coli MS 57-2] gi|324011226|gb|EGB80445.1| radical SAM enzyme, Cfr family [Escherichia coli MS 60-1] gi|324020077|gb|EGB89296.1| radical SAM enzyme, Cfr family [Escherichia coli MS 117-3] gi|324118139|gb|EGC12036.1| cfr family protein radical SAM enzyme [Escherichia coli E1167] gi|327252224|gb|EGE63896.1| hypothetical protein ECSTEC7V_3072 [Escherichia coli STEC_7v] gi|330912292|gb|EGH40802.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli AA86] gi|331039935|gb|EGI12155.1| radical SAM enzyme, Cfr family [Escherichia coli H736] gi|331043074|gb|EGI15214.1| radical SAM enzyme, Cfr family [Escherichia coli M605] gi|331048794|gb|EGI20870.1| radical SAM enzyme, Cfr family [Escherichia coli M718] gi|331054327|gb|EGI26354.1| radical SAM enzyme, Cfr family [Escherichia coli TA206] gi|331059879|gb|EGI31856.1| radical SAM enzyme, Cfr family [Escherichia coli TA143] gi|331064457|gb|EGI36368.1| radical SAM enzyme, Cfr family [Escherichia coli TA271] gi|331069245|gb|EGI40637.1| radical SAM enzyme, Cfr family [Escherichia coli TA280] gi|331074968|gb|EGI46288.1| radical SAM enzyme, Cfr family [Escherichia coli H591] gi|331079117|gb|EGI50319.1| radical SAM enzyme, Cfr family [Escherichia coli H299] gi|332092803|gb|EGI97872.1| hypothetical protein SB359474_2930 [Shigella boydii 3594-74] gi|332100682|gb|EGJ04028.1| ribosomal RNA large subunit methyltransferase N [Shigella sp. D9] Length = 384 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL ++ VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N R L+ + I Y Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281 >gi|296284245|ref|ZP_06862243.1| molybdenum cofactor biosynthesis protein [Citromicrobium bathyomarinum JL354] Length = 346 Score = 37.7 bits (87), Expect = 0.93, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 13/88 (14%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C + + + V L +L + R LTGGEPL++ D Sbjct: 37 DRCDLRCTYC----MPERMQFLPKAEVLSLEELYVLACSFMARGVRTIRLTGGEPLVRRD 92 Query: 101 VPLIQALNKRGFEIAVE-------TNGT 121 V I + G + E TNGT Sbjct: 93 V--IDLVRAIGRHVGSELDEVTLTTNGT 118 >gi|229151763|ref|ZP_04279963.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1550] gi|228631690|gb|EEK88319.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1550] Length = 307 Score = 37.7 bits (87), Expect = 0.93, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ +P LI+ LNK G E I + Sbjct: 14 SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPKLIERLNKIDGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVS 134 TNG++ D + VS Sbjct: 71 TTNGSLLKKFAPDLYKAGLSRVTVS 95 >gi|116625479|ref|YP_827635.1| GTP cyclohydrolase subunit MoaA [Candidatus Solibacter usitatus Ellin6076] gi|116228641|gb|ABJ87350.1| GTP cyclohydrolase subunit MoaA [Candidatus Solibacter usitatus Ellin6076] Length = 331 Score = 37.7 bits (87), Expect = 0.93, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 10/92 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 DR + +C +C +T ++ + + +++ + G ++ R +TGGEPLL+ Sbjct: 23 DRCNIRCFYCMPETGVTFVE--RREILDFEEIERFVRVAAGLGIRKLR---VTGGEPLLR 77 Query: 99 VDVP-LIQAL-NKRGFE-IAVETNGTIEPPQG 127 D+P LI L G + +A+ TNG + Q Sbjct: 78 RDLPVLIGRLACIPGIQDLALTTNGVLLAEQA 109 >gi|170737079|ref|YP_001778339.1| hopanoid biosynthesis associated radical SAM protein HpnH [Burkholderia cenocepacia MC0-3] gi|169819267|gb|ACA93849.1| hopanoid biosynthesis associated radical SAM protein HpnH [Burkholderia cenocepacia MC0-3] Length = 386 Score = 37.7 bits (87), Expect = 0.94, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 22/119 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R +V++ ++E + Sbjct: 38 CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPLL ++P +++ + KR + + TN + + +D SP + + G +E Sbjct: 79 AGGEPLLHKEMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYQPSPYFVWSVHLDGDKE 136 >gi|238927629|ref|ZP_04659389.1| possible anaerobic ribonucleotide reductase small subunit [Selenomonas flueggei ATCC 43531] gi|238884554|gb|EEQ48192.1| possible anaerobic ribonucleotide reductase small subunit [Selenomonas flueggei ATCC 43531] Length = 175 Score = 37.7 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 30/105 (28%) Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLA 71 GEG R+ VF GC +C C DT G VD + Sbjct: 24 GEGI---RLTVF--TQGCP-----------RRCPGCHNPDTQ----PMDGGRITTVDAVL 63 Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114 ++ + L+GGEP LQ +PL +A ++RG ++ Sbjct: 64 QDLDANPLLTG-----LTLSGGEPFLQPAALLPLARAAHERGLDV 103 >gi|296123552|ref|YP_003631330.1| molybdenum cofactor biosynthesis protein A [Planctomyces limnophilus DSM 3776] gi|296015892|gb|ADG69131.1| molybdenum cofactor biosynthesis protein A [Planctomyces limnophilus DSM 3776] Length = 333 Score = 37.7 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 10/85 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 DR + +C +C +G R ++ ++ E I LTGGEPL++ Sbjct: 20 DRCNIRCFYC-----MPEGPVQYLPRQHLLTYEEITELVKIFVSLGIDRVRLTGGEPLVR 74 Query: 99 VDVP-LIQALNKRG--FEIAVETNG 120 D+P LI++L +I + TNG Sbjct: 75 QDLPVLIKSLKAIDGLVDIGLTTNG 99 >gi|228953836|ref|ZP_04115875.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071066|ref|ZP_04204292.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus F65185] gi|229080773|ref|ZP_04213291.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock4-2] gi|229191655|ref|ZP_04318634.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC 10876] gi|228591817|gb|EEK49657.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC 10876] gi|228702507|gb|EEL54975.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock4-2] gi|228712006|gb|EEL63955.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus F65185] gi|228805804|gb|EEM52384.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 307 Score = 37.7 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ +P LI+ LNK G E I + Sbjct: 14 SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPKLIERLNKIDGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVS 134 TNG++ D + VS Sbjct: 71 TTNGSLLKKFAPDLYKAGLSRVTVS 95 >gi|261490661|ref|NP_001159769.1| molybdenum cofactor biosynthesis protein 1 isoform a [Bos taurus] gi|226707542|sp|Q1JQD7|MOCS1_BOVIN RecName: Full=Molybdenum cofactor biosynthesis protein 1; Includes: RecName: Full=Molybdenum cofactor biosynthesis protein A; Includes: RecName: Full=Molybdenum cofactor biosynthesis protein C gi|296474489|gb|DAA16604.1| molybdenum cofactor biosynthesis protein 1 isoform a [Bos taurus] Length = 633 Score = 37.7 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + K +++ L G + R LT Sbjct: 77 CNL-----------RCQYCMPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 122 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GGEPL++ D V ++ L + G I + TNG Sbjct: 123 GGEPLIRPDVVDIVAQLRQLEGLRTIGITTNG 154 >gi|169830805|ref|YP_001716787.1| molybdenum cofactor biosynthesis protein A [Candidatus Desulforudis audaxviator MP104C] gi|169637649|gb|ACA59155.1| molybdenum cofactor biosynthesis protein A [Candidatus Desulforudis audaxviator MP104C] Length = 327 Score = 37.7 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 19/99 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C K + L L+ R LT Sbjct: 23 CNL-----------NCFYC-----RPGEQKTPTVDGLPLESLMRVIRAGARVGIRKIRLT 66 Query: 92 GGEPLLQVD-VPLIQALNKRGF--EIAVETNGTIEPPQG 127 GGEPL++ D +P++ ALN+ +IA+ TNG++ P+ Sbjct: 67 GGEPLVRPDVIPVVAALNEIPQIDDIALTTNGSLLAPRA 105 >gi|146351232|ref|YP_001210459.1| molybdenum cofactor biosynthesis protein A [Arthrobacter nitroguajacolicus] gi|146218796|emb|CAL09868.1| putative MoaA-like protein [Arthrobacter nitroguajacolicus] Length = 376 Score = 37.7 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 27/110 (24%) Query: 21 GRVAVFCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL--ADLIE 75 GR A R S CNL +C +C + + + A+ I+ Sbjct: 39 GRRATDMRLSLTDKCNL-----------RCTYC------MPAEGMEWLSKQAVMSAEEIQ 81 Query: 76 EQWITGEK--EGRYCVLTGGEPLL-QVDVPLIQALNKRG--FEIAVETNG 120 G R LTGGEPL+ + +I +L + I++ TNG Sbjct: 82 RIVRVGVHFLGVRELRLTGGEPLVRADLLDIISSLRQAHPELPISMTTNG 131 >gi|72161752|ref|YP_289409.1| molybdenum cofactor biosynthesis protein A [Thermobifida fusca YX] gi|71915484|gb|AAZ55386.1| GTP cyclohydrolase subunit MoaA [Thermobifida fusca YX] Length = 329 Score = 37.7 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 16/106 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C D++ LI + R TGGEPLL+ Sbjct: 19 DRCNLRCTYCMPPEGLDWLPTPELLTDDEVIRLIR--IGVTQLGIREVRFTGGEPLLRRG 76 Query: 101 VP----LIQALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134 +P AL+ R IA+ TNG T+ G+D + VS Sbjct: 77 LPSIVAATAALDPRP-RIALTTNGIGLNRIAPTL-AEAGLDRVNVS 120 >gi|34499341|ref|NP_903556.1| Fe-S oxidoreductase [Chromobacterium violaceum ATCC 12472] gi|34105191|gb|AAQ61547.1| probable Fe-S oxidoreductase [Chromobacterium violaceum ATCC 12472] Length = 337 Score = 37.7 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 23/129 (17%) Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGTI 122 + + + +L + G V+TGGEPL ++ ++ A++ + V++NG Sbjct: 54 KMEYEDIRNLSRQADELGLARF---VITGGEPLVMKDLDDVVAAIDPEKHYVIVDSNG-- 108 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLV-FPQVNVSPENYIGFDFERFSLQPMDGPFL 181 W L ++ + LK + ++ +S ++++ D + F +P + Sbjct: 109 -------WF---------LDLERAKHLKSIGVEKIQLSLDSFVEKDHDNFRNKPGSYKRV 152 Query: 182 EENTNLAIS 190 + + Sbjct: 153 IRAVDACLD 161 >gi|86157298|ref|YP_464083.1| radical SAM family protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85773809|gb|ABC80646.1| Radical SAM [Anaeromyxobacter dehalogenans 2CP-C] Length = 357 Score = 37.7 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 19/123 (15%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + G T R ++EE G T Sbjct: 34 CNLACAMCPCGAARA--------RGEPRTPPRRMAPALALGVLEE--RRGSPLRELIPST 83 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 GEPLL +P L+ G V TNGT W ++ + +++K Sbjct: 84 MGEPLLWPALPDLLARAAALGIRGNVTTNGTFPGRGAAGW--------AEVLVPACRDVK 135 Query: 151 LVF 153 + + Sbjct: 136 VSW 138 >gi|256842171|ref|ZP_05547676.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298374964|ref|ZP_06984921.1| molybdenum cofactor biosynthesis protein [Bacteroides sp. 3_1_19] gi|256736487|gb|EEU49816.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298267464|gb|EFI09120.1| molybdenum cofactor biosynthesis protein [Bacteroides sp. 3_1_19] Length = 358 Score = 37.7 bits (87), Expect = 0.96, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 7/92 (7%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCVLTG- 92 + +C +C +V Q K + Y + + + Y +TG Sbjct: 7 CLVPDSFCNFKCSYC---YVQQQARKSKKRIYTQYSPSYIAKALSPDRLGGVSYISITGL 63 Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 GE L+Q V ++ + K G + + TNGT++ Sbjct: 64 GETLIQEKVVQIVHEILKTGNYVNITTNGTLD 95 >gi|302876467|ref|YP_003845100.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|307687137|ref|ZP_07629583.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|302579324|gb|ADL53336.1| Radical SAM domain protein [Clostridium cellulovorans 743B] Length = 371 Score = 37.7 bits (87), Expect = 0.96, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 58/168 (34%), Gaps = 30/168 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C T + Q +IE+ G + T Sbjct: 53 CNL-----------ACPHCYTAAANSDQFVPE-LSTAQCYKIIEDIARLGVE---IIGWT 97 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 GGEPLL+ D+ LI G + TNG + +S LK G + ++ Sbjct: 98 GGEPLLRNDLEDLIAYAKSFGIRSGLTTNGLL----------LSESRAKSLKDAGLEIVQ 147 Query: 151 LVF----PQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 + P N + DFE ++ L NTNLA+ C + Sbjct: 148 VSLDGSTPARNAKIRKCLESDFEIVLNGALNSQKLGMNTNLAMLLCSE 195 >gi|170760513|ref|YP_001787335.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum A3 str. Loch Maree] gi|226704814|sp|B1KU20|MOAA_CLOBM RecName: Full=Molybdenum cofactor biosynthesis protein A gi|169407502|gb|ACA55913.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum A3 str. Loch Maree] Length = 319 Score = 37.7 bits (87), Expect = 0.96, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +C +C ++ +++ +++ + G + R+ TG Sbjct: 10 NYLRVSVTDRCNLRCVYCMPPEGIVKKEHDNIMRYEEIFKVVKSASLLGVNKIRF---TG 66 Query: 93 GEPLLQVDV 101 GEPL+ ++ Sbjct: 67 GEPLILKNI 75 >gi|326939860|gb|AEA15756.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar chinensis CT-43] Length = 306 Score = 37.7 bits (87), Expect = 0.97, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-R 110 D+ ++ D++ L G + R LTGGEPLL+ D+P LI L K Sbjct: 9 DYAFLKEEL--LLTFDEIERLARLFISMGVNKIR---LTGGEPLLRKDLPTLIARLAKLE 63 Query: 111 GFE-IAVETNG 120 G + I + TNG Sbjct: 64 GLKDIGLTTNG 74 >gi|320011639|gb|ADW06489.1| Radical SAM domain protein [Streptomyces flavogriseus ATCC 33331] Length = 742 Score = 37.7 bits (87), Expect = 0.97, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 42/121 (34%), Gaps = 22/121 (18%) Query: 42 RLSAQCRF-CDTDFVGIQGTKGGRYNVDQLAD--------LIEEQWITGEKEGRYCVLTG 92 ++ ++C CD ++ + R ++D + E + +L G Sbjct: 14 KVHSRCDLACDHCYIYEHADQSWRTRPKTISDEAISWTARRLAEHASAHALDSMSVILHG 73 Query: 93 GEPLLQ-------VDVPLIQALN---KRGFEIAVETNGTIEPPQGIDWIC-VSPKAGCDL 141 GEPLL V L ALN + I TNG P+ +D K G L Sbjct: 74 GEPLLAGPARLRRVCEELTAALNGIAELDLRIH--TNGVQLSPRYLDLFDEFDVKVGISL 131 Query: 142 K 142 Sbjct: 132 D 132 >gi|254167198|ref|ZP_04874051.1| radical SAM domain protein [Aciduliprofundum boonei T469] gi|197624054|gb|EDY36616.1| radical SAM domain protein [Aciduliprofundum boonei T469] Length = 356 Score = 37.7 bits (87), Expect = 0.97, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 40/192 (20%) Query: 25 VFCRFSG-CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F +G CNL CR+C G+ ++ IE+ EK Sbjct: 5 IF--LTGVCNL-----------NCRYC-------GGSIPEEVMPHEIQYSIEDLKNFVEK 44 Query: 84 EGRYCV-LTGGEPLL--QVDVPLIQALNKRGFEIAVETNG--TIEPPQG----IDWICVS 134 + + GGEPLL + ++ + + F + TNG + P+ ID I VS Sbjct: 45 DKDAIIAFYGGEPLLRIEKMKEIMDNIQAKRFVVQ--TNGFFLHKIPEEYLNRIDAILVS 102 Query: 135 ----PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAIS 190 P+ + G E+ V +V E Y G R ++ + + L++ Sbjct: 103 IDGVPEVTNYYRGNGVYEI--VVDRVRKIREKYKGDLIARMAVSEESDIYRDVMHILSLP 160 Query: 191 YCFQNPKWRLSV 202 + + W+L+V Sbjct: 161 F--DHVHWQLNV 170 >gi|148691685|gb|EDL23632.1| molybdenum cofactor synthesis 1, isoform CRA_b [Mus musculus] Length = 449 Score = 37.7 bits (87), Expect = 0.97, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + K +++ L G + R LT Sbjct: 80 CNL-----------RCQYCMPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 125 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GGEPL++ D V ++ L+ G I + TNG Sbjct: 126 GGEPLIRPDVVDIVARLHGLEGLRTIGLTTNG 157 >gi|301060224|ref|ZP_07201091.1| hopanoid biosynthesis associated radical SAM protein HpnH [delta proteobacterium NaphS2] gi|300445736|gb|EFK09634.1| hopanoid biosynthesis associated radical SAM protein HpnH [delta proteobacterium NaphS2] Length = 338 Score = 37.7 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C+ C + R + + +EE + Sbjct: 40 CNL-----------RCKGCG-KIAYPKEILEKRMSPSECMAAVEECG------APVVSIA 81 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ +P +++ R + + TN + + I SP ++ + + Sbjct: 82 GGEPLMHRQLPEIVRGFAHRKKFVYLCTN-ALLVQKRIHEFEPSPYLTFNVHLDALDD 138 >gi|300725846|ref|ZP_07059312.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Prevotella bryantii B14] gi|299776893|gb|EFI73437.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Prevotella bryantii B14] Length = 164 Score = 37.7 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 27/103 (26%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 +GC C C T G + + + +I+ Sbjct: 25 AGCP-----------NACSGCHNPQSW-DITAGHEMSTEDIMKIIKA------DPYANVT 66 Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130 +GG+P+ Q + L +A+ K ETN TI G + Sbjct: 67 FSGGDPMFQPEGFAELAEAIRK-------ETNKTIWCFSGFTY 102 >gi|229075463|ref|ZP_04208452.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock4-18] gi|228707712|gb|EEL59896.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock4-18] Length = 307 Score = 37.7 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ +P LI+ LNK G E I + Sbjct: 14 SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPELIERLNKIDGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVS 134 TNG++ D + VS Sbjct: 71 TTNGSLLKKFAPDLYKAGLSRVTVS 95 >gi|220915987|ref|YP_002491291.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter dehalogenans 2CP-1] gi|219953841|gb|ACL64225.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter dehalogenans 2CP-1] Length = 337 Score = 37.7 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 19/88 (21%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLL 97 DR + +C +C + D L ++ + R LTGGEP L Sbjct: 35 DRCNFRCTYC---------SPAEHEAPDALLQRPEIARLVRVFAGLGVRRVRLTGGEPTL 85 Query: 98 QVDVPLIQALNKR----GF-EIAVETNG 120 + D L++ + G E+A+ TNG Sbjct: 86 RKD--LVEIVADAAATPGIEEVALTTNG 111 >gi|197121283|ref|YP_002133234.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter sp. K] gi|196171132|gb|ACG72105.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter sp. K] Length = 337 Score = 37.7 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 19/88 (21%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLL 97 DR + +C +C + D L ++ + R LTGGEP L Sbjct: 35 DRCNFRCTYC---------SPAEHEAPDALLQRPEIARLVRVFAGLGVRRVRLTGGEPTL 85 Query: 98 QVDVPLIQALNKR----GF-EIAVETNG 120 + D L++ + G E+A+ TNG Sbjct: 86 RKD--LVEIVADAAATPGIEEVALTTNG 111 >gi|55379648|ref|YP_137498.1| tRNA-modifying enzyme [Haloarcula marismortui ATCC 43049] gi|55232373|gb|AAV47792.1| unknown [Haloarcula marismortui ATCC 43049] Length = 326 Score = 37.7 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 21/105 (20%) Query: 38 REQDRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWIT--------------- 80 + + +C FC D G G + +AD E Sbjct: 57 TPVVKCNERCVFCWRDHAGHAYELGDVEWDDPAAVADASVELQRKLLSGFGGNDEVPREV 116 Query: 81 --GEKEGRYCVLT-GGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 E R+ ++ GEP L +P LI+ + R + +NGT Sbjct: 117 FDQAMEPRHVAISLDGEPTLYPHLPELIEEFHDRDITTFLVSNGT 161 >gi|90423233|ref|YP_531603.1| radical SAM family protein [Rhodopseudomonas palustris BisB18] gi|90105247|gb|ABD87284.1| Radical SAM [Rhodopseudomonas palustris BisB18] Length = 383 Score = 37.7 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 22/119 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R + D EE + Sbjct: 38 CNL-----------ACVGCGKIDY--PDAILNRRMTAQECWDAAEECG------APMVAI 78 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ ++ +++ L +R +++ TN + + + SP + + G +E Sbjct: 79 PGGEPLIHKEIGEIVRGLVERKKFVSLCTN-ALLLEKKLHLFEPSPYLFFSVHLDGMKE 136 >gi|55821919|ref|YP_140361.1| hypothetical protein stu1951 [Streptococcus thermophilus LMG 18311] gi|55823837|ref|YP_142278.1| hypothetical protein str1951 [Streptococcus thermophilus CNRZ1066] gi|55737904|gb|AAV61546.1| conserved hypothetical protein [Streptococcus thermophilus LMG 18311] gi|55739822|gb|AAV63463.1| conserved hypothetical protein [Streptococcus thermophilus CNRZ1066] Length = 424 Score = 37.7 bits (87), Expect = 0.99, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 20/97 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCV 89 CNL C +C + ++ ++I+E G + + Sbjct: 78 CNL-----------SCSYC---YADGGNYGMDNRIMDLTTADNIIQEIASKGVTQINRLI 123 Query: 90 LTGGEPLLQVDV--PLIQALNKRGFEIAVE--TNGTI 122 L GGEP L +++ I+ L+ + +E TNGT+ Sbjct: 124 LFGGEPFLNIELFIYFIEKLSTLLNVVKIETVTNGTV 160 >gi|229140181|ref|ZP_04268739.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BDRD-ST26] gi|228643267|gb|EEK99540.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BDRD-ST26] Length = 307 Score = 37.7 bits (87), Expect = 0.99, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ +P LI+ LNK G E I + Sbjct: 14 SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPQLIERLNKIDGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVS 134 TNG++ D + VS Sbjct: 71 TTNGSLLKKFAPDLYKAGLSRVTVS 95 >gi|229157139|ref|ZP_04285219.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC 4342] gi|228626203|gb|EEK82950.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC 4342] Length = 307 Score = 37.7 bits (87), Expect = 0.99, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ +P LI+ LNK G E I + Sbjct: 14 SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPQLIERLNKIDGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVS 134 TNG++ D + VS Sbjct: 71 TTNGSLLKKFAPDLYKAGLSRVTVS 95 >gi|300694498|ref|YP_003750471.1| radical_sam domain [Ralstonia solanacearum PSI07] gi|299076535|emb|CBJ35860.1| conserved hypothethical protein, radical_SAM domain [Ralstonia solanacearum PSI07] Length = 398 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 29/117 (24%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN--------VDQLADLIEEQWITG 81 CNL C +C +V +G + +D+LA+ I E Sbjct: 28 QRCNL-----------DCTYC---YVYNRGDDSWKTRLPVISDRVIDKLAERINEHCARF 73 Query: 82 EKEGRYCVLTGGEPLL---QVDVPLIQALNKR----GFEIAVETNGTIEPPQGIDWI 131 + + GGEPLL + ++ L + ++TNG + + ID + Sbjct: 74 ALQSFTIEIHGGEPLLLGKRRMREMVDRLRSQVDATHLRFTMQTNGLLLDSEWIDLL 130 >gi|229104098|ref|ZP_04234772.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock3-28] gi|228679305|gb|EEL33508.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock3-28] Length = 307 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ +P LI+ LNK G E I + Sbjct: 14 SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPELIERLNKIDGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVS 134 TNG++ D + VS Sbjct: 71 TTNGSLLKKFAPDLYKAGLSRVTVS 95 >gi|229098012|ref|ZP_04228962.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock3-29] gi|229117031|ref|ZP_04246413.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock1-3] gi|228666435|gb|EEL21895.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock1-3] gi|228685449|gb|EEL39377.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock3-29] Length = 307 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ +P LI+ LNK G E I + Sbjct: 14 SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPELIERLNKIDGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVS 134 TNG++ D + VS Sbjct: 71 TTNGSLLKKFAPDLYKAGLSRVTVS 95 >gi|254511606|ref|ZP_05123673.1| radical SAM domain protein [Rhodobacteraceae bacterium KLH11] gi|221535317|gb|EEE38305.1| radical SAM domain protein [Rhodobacteraceae bacterium KLH11] Length = 317 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 8/89 (8%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCVLT 91 LW + +C C ++ T D++ D +++ R T Sbjct: 37 LWFNT-GTLCNIECVNC---YIASSPTNDALVYITTDEVRDYLDQIQERNW-PIREIGFT 91 Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETN 119 GGEP + + + +A +RG+E+ + TN Sbjct: 92 GGEPFMNPQMIDMTRAALERGYEVLILTN 120 >gi|254466079|ref|ZP_05079490.1| coenzyme PQQ biosynthesis protein E [Rhodobacterales bacterium Y4I] gi|206686987|gb|EDZ47469.1| coenzyme PQQ biosynthesis protein E [Rhodobacterales bacterium Y4I] Length = 361 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 16/125 (12%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R C +C + + AD + G + L+GGEP + D+ Sbjct: 16 RCPLACPYCSNPQDLLGRE--AEMTTAEWADAFRQAAELGVLQLH---LSGGEPAARPDL 70 Query: 102 P-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP 160 L A G + T+G I ++PK L+ G ++L N Sbjct: 71 ADLTAAARGCGLYTNLITSG----------IGLTPKRLDALEAAGLDHIQLSLQGTNAEL 120 Query: 161 ENYIG 165 ++IG Sbjct: 121 ADWIG 125 >gi|117927989|ref|YP_872540.1| coproporphyrinogen III oxidase, anaerobic [Acidothermus cellulolyticus 11B] gi|117648452|gb|ABK52554.1| coproporphyrinogen III oxidase, anaerobic [Acidothermus cellulolyticus 11B] Length = 400 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 18/99 (18%) Query: 44 SAQCRFCD--TDFVGIQGTKGGRYNV--DQLADL-IEEQWITGEKEGRYCVLTGGEPLLQ 98 +A+C +CD T G R D +A+L + ++++G+ + GG P L Sbjct: 36 AARCGYCDFNTYTAAELGGHASRLTFVHDAIAELRMARRFLSGDAVVQTVFFGGGTPTLL 95 Query: 99 VDVPLIQAL--------NKRGFEIAVETNGTIEPPQGID 129 LI+ L G E+ VE N P+ +D Sbjct: 96 PAAHLIEILRVIDGEFGLAAGAEVTVEAN-----PESVD 129 >gi|320353735|ref|YP_004195074.1| Radical SAM domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320122237|gb|ADW17783.1| Radical SAM domain protein [Desulfobulbus propionicus DSM 2032] Length = 469 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 21/117 (17%) Query: 30 SGCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE 75 +GC G D R + +C C F + + + Sbjct: 79 AGCPHDCGLCPDHGQHTCTALIEITARCNLRCPVC---FAAAGASGADDDPSLERIEFFY 135 Query: 76 EQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGF-EIAVETNGTIEPPQGIDW 130 ++ + L+GGEP ++ D+ I AL +GF I + TNG + + D+ Sbjct: 136 DRILEASGPC-NIQLSGGEPTMRDDLDAIIALGRDKGFGFIQLNTNG-LRLAENPDY 190 >gi|295106643|emb|CBL04186.1| ribonucleoside-triphosphate reductase class III activase subunit [Gordonibacter pamelaeae 7-10-1-b] Length = 181 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 21/93 (22%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 AVF GC + C C + V + DL+ I K Sbjct: 26 AVFV--QGC-----------THGCPGC----HNPESQPRAGGEVRAIDDLVA--HIAANK 66 Query: 84 EGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114 + ++GGEP Q L + G + Sbjct: 67 LAQGVTISGGEPFEQAAACAELARRCRALGLNV 99 >gi|294649161|ref|ZP_06726602.1| coproporphyrinogen dehydrogenase [Acinetobacter haemolyticus ATCC 19194] gi|292824959|gb|EFF83721.1| coproporphyrinogen dehydrogenase [Acinetobacter haemolyticus ATCC 19194] Length = 384 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 40/115 (34%), Gaps = 14/115 (12%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIE----EQWITGEKEGRY 87 L +C +CD + G LA L+ + + + Sbjct: 10 PLSLYIHMPWCVRKCPYCDFNSHAVPDGHLSMDLEQQYLAALVADFETQIEMAQGRSIHS 69 Query: 88 CVLTGGEPLL---QVDVPLIQALNKR-GF----EIAVETN-GTIEPPQGIDWICV 133 + GG P L Q L + L R GF EI +E N GT+E D++ V Sbjct: 70 VFIGGGTPSLISAQGYQWLFEQLKARLGFEADCEITLEANPGTVEHDPFADYLAV 124 >gi|126666042|ref|ZP_01737022.1| pyrroloquinoline quinone biosynthesis protein PqqE [Marinobacter sp. ELB17] gi|126629364|gb|EAZ99981.1| pyrroloquinoline quinone biosynthesis protein PqqE [Marinobacter sp. ELB17] Length = 385 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 19/114 (16%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E R QC +C DF + + + ++ + G + + Sbjct: 19 PLWLLAELTYRCPLQCPYCSNPLDFAQTE----RELSTEDWVKVLRQGREMGAAQLGF-- 72 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG---TIE-----PPQGIDWICVS 134 +GGEPL+ Q LI G+ + T+G T G+D I VS Sbjct: 73 -SGGEPLVRQDLQELIAEARHLGYYSNLITSGLGLTNAKVEAFASAGLDHIQVS 125 >gi|121604771|ref|YP_982100.1| radical SAM protein [Polaromonas naphthalenivorans CJ2] gi|205829800|sp|A1VNF1|RLMN_POLNA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|120593740|gb|ABM37179.1| 23S rRNA m(2)A-2503 methyltransferase [Polaromonas naphthalenivorans CJ2] Length = 382 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 12/100 (12%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLADL-IEEQWITGEKEGRYCVLTG 92 Q + CRFC T G T G + A+ + + E+ V+ G Sbjct: 104 CISSQAGCAVGCRFCSTGHQGFSRNLTTGEIISQLWFAEHFLRKHLGRNERVISNVVMMG 163 Query: 93 -GEPLL---QVDVPLIQALNKRGF-----EIAVETNGTIE 123 GEPL Q+ L LN G+ + V T+G + Sbjct: 164 MGEPLQNYSQLLPALKVMLNDHGYGLSRRRVTVSTSGVVP 203 >gi|28210022|ref|NP_780966.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium tetani E88] gi|28202457|gb|AAO34903.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium tetani E88] Length = 169 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 21/97 (21%) Query: 21 GRVAV-FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 G +V F SGCN +C+ C + + G R +D++ D ++ Sbjct: 19 GLRSVLF--LSGCN-----------HKCKGC-HNLIMQDFKYGDRVKIDEIMDRVKGNIP 64 Query: 80 TGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEI 114 R +GGEPL Q L + K I Sbjct: 65 I----IRGVTFSGGEPLEQAENLARLASMIKKENLNI 97 >gi|220919464|ref|YP_002494768.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219957318|gb|ACL67702.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 338 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 59/186 (31%), Gaps = 22/186 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 ++ Q + C FC T +G+ + V QL + E+ V G Sbjct: 97 HVVCLSSQAGCALGCAFCATAKLGLDRSLRSWEMVAQLLAV----RADSERPITGVVFMG 152 Query: 93 -GEPLLQVDVPLIQ--ALNK-RG-----FEIAVETNGTIE------PPQGIDWICVSPKA 137 GEP L D L AL G I++ T G + +C+S A Sbjct: 153 QGEPFLNYDEVLTAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGHKFRLCISLNA 212 Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-RFSLQP--MDGPFLEENTNLAISYCFQ 194 K + ++ FP + R +L+ + G + E A+ Sbjct: 213 AMPWKRRALMPVEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGQLLA 272 Query: 195 NPKWRL 200 RL Sbjct: 273 GIPVRL 278 >gi|147676929|ref|YP_001211144.1| Fe-S oxidoreductases [Pelotomaculum thermopropionicum SI] gi|146273026|dbj|BAF58775.1| predicted Fe-S oxidoreductases [Pelotomaculum thermopropionicum SI] Length = 338 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C G G R ++ ++ +++ Y + Sbjct: 24 CNL-----------SCIHC---LAGSSGDGPDRLSMGEVRHFLDDLARMKVF---YINIG 66 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GGEPLL ++ KR + TNGT+ Sbjct: 67 GGEPLLHPRFFDIVDYALKRDIYVQFSTNGTL 98 >gi|90417325|ref|ZP_01225251.1| pyrroloquinoline quinone biosynthesis protein PqqE [marine gamma proteobacterium HTCC2207] gi|90330910|gb|EAS46173.1| pyrroloquinoline quinone biosynthesis protein PqqE [marine gamma proteobacterium HTCC2207] Length = 401 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 6/89 (6%) Query: 33 NLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E QC +C ++ + + + D+ + ++ G + L+ Sbjct: 16 PLWLLAELSYSCPLQCAYC-SNPINYPEARSSELSTDEWKTVFKDARKMGAVQLG---LS 71 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETN 119 GGEPL++ D+ LI GF + T+ Sbjct: 72 GGEPLVRPDLEELIAEARALGFYTNLITS 100 >gi|167462522|ref|ZP_02327611.1| hypothetical protein Plarl_08165 [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381453|ref|ZP_08055445.1| synthesis of sporulation killing factor A-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154592|gb|EFX46874.1| synthesis of sporulation killing factor A-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 404 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 17/64 (26%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL C FC + D+ ++++ G + L Sbjct: 114 GCNL-----------SCSFC---YASSGKRLENELATDEWLQILKKLAAVGVND---VTL 156 Query: 91 TGGE 94 TGGE Sbjct: 157 TGGE 160 >gi|85373383|ref|YP_457445.1| molybdenum cofactor biosynthesis protein [Erythrobacter litoralis HTCC2594] gi|123099561|sp|Q2NCE3|MOAA_ERYLH RecName: Full=Molybdenum cofactor biosynthesis protein A gi|84786466|gb|ABC62648.1| probable molybdenum cofactor biosynthesis protein [Erythrobacter litoralis HTCC2594] Length = 332 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 15/89 (16%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C + +++L DL G + R LTGGEPL++ D Sbjct: 23 DRCDLRCTYC-MPERMQFLPRAEVLTLEELRDLAVGFMRRGITKIR---LTGGEPLVRRD 78 Query: 101 -VPLIQALNKRGFEI--AVE-----TNGT 121 V LI+AL G + +E TNGT Sbjct: 79 VVDLIRAL---GRHVGDGLEELTLTTNGT 104 >gi|78355325|ref|YP_386774.1| radical SAM domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217730|gb|ABB37079.1| radical SAM domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 238 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 17/121 (14%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYC 88 GCN S + +C C + Q + + + ++ +WI G Sbjct: 21 GCNT-SVIFMGGCNMRCPTCHNYTIAWQPEQVPAISRQSILTYLKNRAKWIDG------V 73 Query: 89 VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG-------TIEPPQGIDWICVSPKAGCD 140 V+TGGE L + ++ + G I ++TNG ++ Q +D V K + Sbjct: 74 VVTGGEATLVPQLETVLHDIKALGMRIKLDTNGMRPDVVESLMQQQLVDLFAVDVKGPWE 133 Query: 141 L 141 L Sbjct: 134 L 134 >gi|255081048|ref|XP_002504090.1| molybdopterin synthase [Micromonas sp. RCC299] gi|226519357|gb|ACO65348.1| molybdopterin synthase [Micromonas sp. RCC299] Length = 365 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLT 91 N ++ + +C +C GI T + D++ + G + R LT Sbjct: 50 NYLRISLTEKCNLRCLYC-MPEEGIDLTAKEELLSTDEVVRVARLFVANGVDKIR---LT 105 Query: 92 GGEPLLQVDV-PLIQALNKR-GFE-IAVETNG 120 GGEP ++ D+ +I+ L G IA+ TNG Sbjct: 106 GGEPTVRPDLEEIIRRLRALPGLRDIAITTNG 137 >gi|53803496|ref|YP_114807.1| MoaA/NifB/PqqE family protein [Methylococcus capsulatus str. Bath] gi|53757257|gb|AAU91548.1| MoaA/NifB/PqqE family protein [Methylococcus capsulatus str. Bath] Length = 455 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 23/113 (20%) Query: 28 RFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLA 71 RF+ GC G D + C C + G ++D++ Sbjct: 75 RFATPMARGCPWDCGLCPDHMQHSCVTVLEVTGHCNLRCPVCYAGSGPDNPSYRSLDEIG 134 Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE----IAVETNG 120 +++ + E E ++GGEP L L + + V TNG Sbjct: 135 RMLD-TIVENEGEPDVVQISGGEPTLHPR--FFDILKEARRRPIRHLMVNTNG 184 >gi|30020258|ref|NP_831889.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC 14579] gi|229043907|ref|ZP_04191603.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH676] gi|29895808|gb|AAP09090.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC 14579] gi|228725438|gb|EEL76699.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH676] Length = 337 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L G + R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPD--YAFLKEEL--LLTFDEIERLARLFISMGVNKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQAL-NKRGFE-IAVETNG 120 GEPLL+ D+ LI L N G + I + TNG Sbjct: 75 GEPLLRKDLSTLIARLTNLEGLQDIGLTTNG 105 >gi|70726083|ref|YP_252997.1| hypothetical protein SH1082 [Staphylococcus haemolyticus JCSC1435] gi|68446807|dbj|BAE04391.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 381 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 12/91 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D + ++E + R +TGGEP+ Sbjct: 45 RCSHCAVGYT-LQTKDPDALPMDIIYRRLDEI-----PQLRTISITGGEPMFSKKSIKNI 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130 PL++ RG + + +N T+ + +D Sbjct: 99 VKPLLKYAKDRGIYVQMNSNLTLPQDRYLDI 129 >gi|322435418|ref|YP_004217630.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9] gi|321163145|gb|ADW68850.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9] Length = 377 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 41/128 (32%), Gaps = 30/128 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C Q + LI++ VL Sbjct: 65 CNLL-----------CVTC--PRTYEQLEPEADMPWEMFTSLIDQYPNIAR-----VVLH 106 Query: 92 G-GEPLLQVDVPL-IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 G GEP+L D+ ++ L R + TNGT+ ++ K G L G EL Sbjct: 107 GIGEPMLVKDIAERVKYLKDRNIYVLFNTNGTL----------LNDKNGRALIEAGLDEL 156 Query: 150 KLVFPQVN 157 ++ Sbjct: 157 RVSLDAAE 164 >gi|295695415|ref|YP_003588653.1| YfkB-like domain protein [Bacillus tusciae DSM 2912] gi|295411017|gb|ADG05509.1| YfkB-like domain protein [Bacillus tusciae DSM 2912] Length = 408 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 41/125 (32%), Gaps = 42/125 (33%) Query: 14 QGEGGHAGRVAVFCRFS--------GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65 QGE R S CNL C DT + + R Sbjct: 20 QGE----------IRLSSIEVTVTGRCNLRC--------EHCAVGDTLTITEE-----RP 56 Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV------PLIQALNKRGFEIAVETN 119 ++ L +++ +TGGEP ++ PL++ RG + + TN Sbjct: 57 DIGPLLRRLDQI-----DHLTTLSITGGEPSYDRELIESTVLPLLRYAKNRGCQTQINTN 111 Query: 120 GTIEP 124 T++ Sbjct: 112 LTLDV 116 >gi|253579549|ref|ZP_04856818.1| glycyl-radical enzyme activating protein family [Ruminococcus sp. 5_1_39B_FAA] gi|251849050|gb|EES77011.1| glycyl-radical enzyme activating protein family [Ruminococcus sp. 5_1_39BFAA] Length = 263 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 26/107 (24%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC-----------DTDFVGIQGTKGGRYNVDQLADL 73 VF GC +C++C G G V ++ + Sbjct: 28 VF--LKGC-----------VLRCKWCCNPESQEYKIQTMKVQGEDKVIGRDVTVREMIEE 74 Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 +E+ + + G L+GGE L Q + L++A +RG A+E+ Sbjct: 75 VEKDRVYYYRSGGGMTLSGGECLCQPEFAGALLRAAKERGISTAIES 121 >gi|317049139|ref|YP_004116787.1| radical SAM enzyme, Cfr family [Pantoea sp. At-9b] gi|316950756|gb|ADU70231.1| radical SAM enzyme, Cfr family [Pantoea sp. At-9b] Length = 389 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I +TG++ V+ G Sbjct: 123 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG 182 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL ++ VP ++ L+ GF + + T+G + + D I V Sbjct: 183 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 233 >gi|125718548|ref|YP_001035681.1| pyruvate formate-lyase-activating enzyme, putative [Streptococcus sanguinis SK36] gi|125498465|gb|ABN45131.1| Pyruvate formate-lyase-activating enzyme, putative [Streptococcus sanguinis SK36] gi|325690982|gb|EGD32982.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK115] gi|325695084|gb|EGD36987.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK150] gi|327470462|gb|EGF15918.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK330] gi|327490123|gb|EGF21911.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK1058] Length = 269 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 25/101 (24%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC++ +C++C DT + + + + D+++E Sbjct: 37 VF--LQGCHM-----------RCQYCHNPDT-----WEMETNKSQLRTVDDVLQEALRYK 78 Query: 82 EKEGRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118 G ++GGE LLQ+D + L + G ++T Sbjct: 79 GFWGNKGGITVSGGEALLQIDFLIALFTKAKELGIHCTLDT 119 >gi|157112872|ref|XP_001657654.1| molybdopterin cofactor synthesis protein a [Aedes aegypti] gi|108884620|gb|EAT48845.1| molybdopterin cofactor synthesis protein a [Aedes aegypti] Length = 481 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGT-KGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C++C G+Q T K D++ L G ++ R L Sbjct: 125 CNL-----------RCKYC-MPAEGVQLTPKDNLLTTDEVLRLATLFVEQGVRKIR---L 169 Query: 91 TGGEPLLQVDVP-LIQALNKRGF--EIAVETNG 120 TGGEP ++ D+P +I+ L + + + TNG Sbjct: 170 TGGEPTVRKDLPEIIERLKRIPLLESVGITTNG 202 >gi|325275801|ref|ZP_08141670.1| molybdenum cofactor synthesis domain-containing protein [Pseudomonas sp. TJI-51] gi|324099072|gb|EGB97049.1| molybdenum cofactor synthesis domain-containing protein [Pseudomonas sp. TJI-51] Length = 322 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 23/164 (14%) Query: 46 QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102 C +C D + + D LA + E +TGGEPL+ Sbjct: 24 ACTYCVPDGKRLV---AAQDELSADALARGVAYLIEAAGIERLR--ITGGEPLVSPRLDA 78 Query: 103 LIQALNKRGFE-IAVETNG---TIEPPQ----GIDWICVSPKAGCDLKIK---GGQELKL 151 + A+ K G E I++ TNG + PQ GI + VS L + G +L Sbjct: 79 FLAAVAKLGLEDISLTTNGQMLGRKLPQLQAAGIRRLNVSLDTLDPLAFRQIARGGDLAT 138 Query: 152 VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 V + + + + ++ PM G L++ L + YC Sbjct: 139 VLAAMERARAMGMQI---KVNMVPMRGQNLDQVLPL-LDYCMAR 178 >gi|153000510|ref|YP_001366191.1| radical SAM domain-containing protein [Shewanella baltica OS185] gi|151365128|gb|ABS08128.1| Radical SAM domain protein [Shewanella baltica OS185] Length = 314 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 14/107 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY--------CVLTGGEPLL 97 C +C + ++ D + E +I G + GGEP++ Sbjct: 35 NCSYCFAKWGKPNELHRSLPEIETFLDNLSEYFIKGSPPLKNELGYESVRLNFAGGEPMM 94 Query: 98 QVDVPLIQAL--NKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 I + ++GF+ ++ TNG +D PK D+ Sbjct: 95 LGSTFFIALMLAKQKGFKTSIITNGHYLINCHLDL----PKNVLDMV 137 >gi|24213374|ref|NP_710855.1| oxidoreductase [Leptospira interrogans serovar Lai str. 56601] gi|45658752|ref|YP_002838.1| hypothetical protein LIC12923 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24194126|gb|AAN47873.1| oxidoreductase [Leptospira interrogans serovar Lai str. 56601] gi|45601996|gb|AAS71475.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 514 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 19/96 (19%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 F GC+L C FC + G++ + + + Q Sbjct: 239 FRGCDL-----------SCSFC--PRQFNSNDQDGKFLSPEFLESLLRQQEESFSNEYTV 285 Query: 89 VLTG-GEPLLQVDV-PLI-QALNKRGF---EIAVET 118 G GEPLL + LI AL E+ +ET Sbjct: 286 CFGGLGEPLLHPNFKELILTALKSSSHLMQELMIET 321 >gi|325289531|ref|YP_004265712.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964932|gb|ADY55711.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 332 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 49 FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL 107 +CD + + + + ++E+ G + + +GGEPL++ D+ L Sbjct: 14 YCDHCYRDSGVRQEEELSTAEAETMLEQIARAG---FKIMIFSGGEPLMRPDIVDLAAYA 70 Query: 108 NKRGFEIAVETNGTI 122 + G TNGT+ Sbjct: 71 RELGLRPVFGTNGTL 85 >gi|308050460|ref|YP_003914026.1| 23S rRNA m(2)A-2503 methyltransferase [Ferrimonas balearica DSM 9799] gi|307632650|gb|ADN76952.1| 23S rRNA m(2)A-2503 methyltransferase [Ferrimonas balearica DSM 9799] Length = 372 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 58/178 (32%), Gaps = 34/178 (19%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI----------TGEKEG 85 Q + +C FC T G +A++I + W TGE+ Sbjct: 106 CVSSQVGCALECSFCSTAQQGFN-------RNLSVAEIIGQVWRVAKYLGLKNETGERPI 158 Query: 86 RYCVLTG-GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSP 135 V+ G GEPLL + VP + L+ GF + + T+G + + D I V+ Sbjct: 159 SNVVMMGMGEPLLNLSNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA- 217 Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 L EL+ V VN R L + + Y Sbjct: 218 -LAISLHAPN-DELRDVLVPVNKKYNIETFLASVRTYL----TKSYANKGRVTVEYVM 269 >gi|229028271|ref|ZP_04184407.1| dehydrogenase [Bacillus cereus AH1271] gi|228733035|gb|EEL83881.1| dehydrogenase [Bacillus cereus AH1271] Length = 375 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|20809080|ref|NP_624251.1| arylsulfatase regulator (Fe-S oxidoreductase) [Thermoanaerobacter tengcongensis MB4] gi|20517756|gb|AAM25855.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Thermoanaerobacter tengcongensis MB4] Length = 441 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 23/112 (20%) Query: 27 CRFSGCNLWSGREQDR-------LSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 RF NLW R D+ + C F C + +G + + +++ D I + Sbjct: 76 LRF---NLWRSRFNDKNLGLTIAPTLGCNFAC--VYCYEKGNQKDVFMSEEVQDKIVKYI 130 Query: 79 ITGEKEGRYCVLT--GGEPLLQVDV-----PLIQALNKRG---FEIAVETNG 120 K + +T GGEPLL D+ I L + ++ TNG Sbjct: 131 KQRIKYLQSVNITWYGGEPLLAFDIVKDMSEKIIKLCDENEVMYGASIITNG 182 >gi|330836381|ref|YP_004411022.1| Radical SAM domain-containing protein [Spirochaeta coccoides DSM 17374] gi|329748284|gb|AEC01640.1| Radical SAM domain protein [Spirochaeta coccoides DSM 17374] Length = 335 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 19/92 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + + +Q+ + + + +G + T Sbjct: 18 CNL-----------RCIYC----NPEGKFEDRKIMDEQVLNNVIKACSELSFKGVH--FT 60 Query: 92 GGEPLLQVDVPL-IQALNKRGFE-IAVETNGT 121 GGEP+++ ++ L I+ + I++ TNGT Sbjct: 61 GGEPMMRENIILAIKYCKNLNYHDISMTTNGT 92 >gi|330824021|ref|YP_004387324.1| ribosomal RNA large subunit methyltransferase N [Alicycliphilus denitrificans K601] gi|329309393|gb|AEB83808.1| Ribosomal RNA large subunit methyltransferase N [Alicycliphilus denitrificans K601] Length = 374 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 14/101 (13%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLADLIEEQWIT-GEKEGRYCVLTG 92 Q + CRFC T G T G A+ + Q GE+ V+ G Sbjct: 104 CISSQAGCAVGCRFCSTGHQGFSRNLTTGEIVAQLWHAEHVLRQRRGDGERVISNVVMMG 163 Query: 93 -GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123 GEPL Q L+ AL G+ + V T+G + Sbjct: 164 MGEPL-QNYSALVPALRIMLDDHGYGLSRRRVTVSTSGVVP 203 >gi|299136275|ref|ZP_07029459.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8] gi|298602399|gb|EFI58553.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8] Length = 358 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 23/117 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C + ++ G ++ Sbjct: 61 CNL-----------ACTYC--------NEFDDVSKPVDIEEMKRRVDHLGRLGTSVITIS 101 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147 GGEPLL ++ +I+ + K G + TNG + P I+ + KAG D Sbjct: 102 GGEPLLHPELDDVIRQIRKTGAIAGMITNGYLLMPDRIERLN---KAGLDHMQISID 155 >gi|319763716|ref|YP_004127653.1| radical sam enzyme, cfr family [Alicycliphilus denitrificans BC] gi|317118277|gb|ADV00766.1| radical SAM enzyme, Cfr family [Alicycliphilus denitrificans BC] Length = 374 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 14/101 (13%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLADLIEEQWIT-GEKEGRYCVLTG 92 Q + CRFC T G T G A+ + Q GE+ V+ G Sbjct: 104 CISSQAGCAVGCRFCSTGHQGFSRNLTTGEIVAQLWHAEHVLRQRRGDGERVISNVVMMG 163 Query: 93 -GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123 GEPL Q L+ AL G+ + V T+G + Sbjct: 164 MGEPL-QNYSALVPALRIMLDDHGYGLSRRRVTVSTSGVVP 203 >gi|296502742|ref|YP_003664442.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis BMB171] gi|296323794|gb|ADH06722.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis BMB171] Length = 337 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L G + R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPD--YAFLKEEL--LLTFDEIERLARLFISMGVNKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQAL-NKRGFE-IAVETNG 120 GEPLL+ D+ LI L N G + I + TNG Sbjct: 75 GEPLLRKDLSTLIARLTNLEGLQDIGLTTNG 105 >gi|296109160|ref|YP_003616109.1| Radical SAM domain protein [Methanocaldococcus infernus ME] gi|295433974|gb|ADG13145.1| Radical SAM domain protein [Methanocaldococcus infernus ME] Length = 494 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 19/106 (17%) Query: 31 GCNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 GC G +R + C C F T + + E Sbjct: 70 GCPFDCGLCPSHRTTTILANIDVTNRCNLNCPIC---FANANKTGKVYEPSFEEIKKMME 126 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120 + E GGEP ++ D+P LI+ + GF ++ + TNG Sbjct: 127 ILRSEEPPTPAIQFAGGEPTVREDLPELIKLAREMGFLQVQIATNG 172 >gi|163793282|ref|ZP_02187257.1| Radical SAM:Molybdenum cofactor synthesis-like protein [alpha proteobacterium BAL199] gi|159181084|gb|EDP65599.1| Radical SAM:Molybdenum cofactor synthesis-like protein [alpha proteobacterium BAL199] Length = 346 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 10/95 (10%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR +C +C K ++++LA L G K+ R LTG Sbjct: 26 NYLRISVTDRCDFRCVYC-MAENMTFLPKADVLSLEELARLCNVFVDLGVKKLR---LTG 81 Query: 93 GEPL-----LQVDVPLIQALNKRGF-EIAVETNGT 121 GEPL + + L + L+ G E+ V TNG+ Sbjct: 82 GEPLVRRNIMWLFRELGKRLDGGGLEELTVTTNGS 116 >gi|254823205|ref|ZP_05228206.1| molybdenum cofactor biosynthesis protein A [Mycobacterium intracellulare ATCC 13950] Length = 364 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 65/181 (35%), Gaps = 25/181 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C G+ G + +LA L++ TGGEPLL Sbjct: 51 DRCNLRCTYC-MPAEGLDWLPGEQLLTAGELARLMD--IAVTRLGVTNVRFTGGEPLLAR 107 Query: 100 DVPLIQALNKRGF----EIAVETNGT-------IEPPQGIDWICVS----PKAGCDLKIK 144 + + A G EI++ TNG G+D + VS + I Sbjct: 108 HLEEVIA-AAAGLRPRPEISLTTNGVGLARRAAGLARAGLDRVNVSLDSVDRQHFA-AIT 165 Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN-PKWRLSVQ 203 L V + + E + L P G E+ +L + +C ++ + R+ Q Sbjct: 166 RRDRLDDVLAGLAAAHEAGLAPVKVNAVLDPATG--REDVVDL-LRFCLEHGYQLRVIEQ 222 Query: 204 T 204 Sbjct: 223 M 223 >gi|229089543|ref|ZP_04220810.1| dehydrogenase [Bacillus cereus Rock3-42] gi|228693759|gb|EEL47455.1| dehydrogenase [Bacillus cereus Rock3-42] Length = 375 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|229048433|ref|ZP_04194000.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH676] gi|229130005|ref|ZP_04258969.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BDRD-Cer4] gi|229147295|ref|ZP_04275646.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BDRD-ST24] gi|228636196|gb|EEK92675.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BDRD-ST24] gi|228653449|gb|EEL09323.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BDRD-Cer4] gi|228722948|gb|EEL74326.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH676] Length = 339 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 14/88 (15%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C +D+ ++ D++ L + G ++ R +TGGE Sbjct: 24 DRCNFRCTYCMPAEIFGSDYAFLKDEF--LLTFDEIERLAKLFVNIGVRKIR---ITGGE 78 Query: 95 PLLQVDV-PLIQALNKRG--FEIAVETN 119 PLL+ D+ LI L K +I + TN Sbjct: 79 PLLRKDLTKLIARLVKIDGLIDIGLTTN 106 >gi|218895539|ref|YP_002443950.1| hypothetical protein BCG9842_B4837 [Bacillus cereus G9842] gi|218541756|gb|ACK94150.1| conserved hypothetical protein [Bacillus cereus G9842] Length = 375 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|196034724|ref|ZP_03102132.1| conserved hypothetical protein [Bacillus cereus W] gi|228944235|ref|ZP_04106611.1| dehydrogenase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195992767|gb|EDX56727.1| conserved hypothetical protein [Bacillus cereus W] gi|228815386|gb|EEM61631.1| dehydrogenase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 375 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|197117823|ref|YP_002138250.1| pyranopterin triphosphate synthase [Geobacter bemidjiensis Bem] gi|197087183|gb|ACH38454.1| pyranopterin triphosphate synthase [Geobacter bemidjiensis Bem] Length = 326 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 8/94 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLT 91 N DR + +C +C G++ R + ++L + ++ G ++ R +T Sbjct: 12 NYLRLSVTDRCNLRCSYC-MPAQGVKLLPQDRVLSYEELLRVAKQAVAVGIEKIR---VT 67 Query: 92 GGEPLLQVDV-PLIQALNK-RGF-EIAVETNGTI 122 GGEPL++ + P ++ L G E+ + TNGT+ Sbjct: 68 GGEPLVRKGIVPFLKRLALIPGLEELVLTTNGTL 101 >gi|42779617|ref|NP_976864.1| hypothetical protein BCE_0537 [Bacillus cereus ATCC 10987] gi|206974237|ref|ZP_03235154.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|217958018|ref|YP_002336562.1| hypothetical protein BCAH187_A0537 [Bacillus cereus AH187] gi|222094217|ref|YP_002528274.1| thioredoxin-like oxidoreductase [Bacillus cereus Q1] gi|229137284|ref|ZP_04265900.1| dehydrogenase [Bacillus cereus BDRD-ST26] gi|229194799|ref|ZP_04321586.1| dehydrogenase [Bacillus cereus m1293] gi|42735533|gb|AAS39472.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gi|206747477|gb|EDZ58867.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|217065915|gb|ACJ80165.1| conserved hypothetical protein [Bacillus cereus AH187] gi|221238272|gb|ACM10982.1| thioredoxin-like oxidoreductase [Bacillus cereus Q1] gi|228588647|gb|EEK46678.1| dehydrogenase [Bacillus cereus m1293] gi|228646187|gb|EEL02405.1| dehydrogenase [Bacillus cereus BDRD-ST26] gi|324324522|gb|ADY19782.1| thioredoxin-like oxidoreductase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 375 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|146295610|ref|YP_001179381.1| radical SAM domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409186|gb|ABP66190.1| Radical SAM domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 487 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 20/91 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R+ DT F+ + L + +E G +E V++ Sbjct: 123 CNLNCSHCFARMKG-----DTGFI----------PANDLIRIFKEAQSLGVQE---IVIS 164 Query: 92 GGEPLLQVDVP--LIQALNKRGFEIAVETNG 120 GGEP L ++ L +A ++I + TNG Sbjct: 165 GGEPTLHPELENILREARKIGDWKIKLITNG 195 >gi|260893393|ref|YP_003239490.1| Radical SAM domain protein [Ammonifex degensii KC4] gi|260865534|gb|ACX52640.1| Radical SAM domain protein [Ammonifex degensii KC4] Length = 466 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 21/92 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C + G+ K + L +I E G + V++ Sbjct: 128 CNL-----------RCEGC---WAGMY-EKHDTLEFETLDRIITEAKELGIY---WIVMS 169 Query: 92 GGEPLLQ-VDVPLIQALNKRGFEIAVETNGTI 122 GGEP + L+ F + TNGT+ Sbjct: 170 GGEPFKYSRLLELVAKHPDMAFMVY--TNGTL 199 >gi|221067914|ref|ZP_03544019.1| molybdenum cofactor biosynthesis protein A [Comamonas testosteroni KF-1] gi|220712937|gb|EED68305.1| molybdenum cofactor biosynthesis protein A [Comamonas testosteroni KF-1] Length = 380 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 25/153 (16%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D ++ + + ++ ++ + R LTGGE Sbjct: 48 DRCNFRCNYCMPKEVFDKNYQYLPHS-----SLLSFEEITRLARLFVAHGVRKLRLTGGE 102 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140 PLL+ ++ LI L + ++ + TN ++ G++ + VS D Sbjct: 103 PLLRKNIEALIAQLAELRTPDGLPLDLTLTTNASLLARKARALKEAGLNRVTVSLDGLDD 162 Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173 + ++ V E + Sbjct: 163 AVFRRMNDVDFPVTDVLAGIEAAQATGLSHIKV 195 >gi|167842323|ref|ZP_02469007.1| radical SAM domain protein [Burkholderia thailandensis MSMB43] Length = 386 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 22/116 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R +VD+ ++E + Sbjct: 38 CNL-----------ACNGCGKIDY--PDPILNQRLSVDECLQAVDECG------APVVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 GGEPLL ++P +++ + KR + + TN + + +D SP + + G Sbjct: 79 AGGEPLLHKEMPDIVKGIMKRKKFVYLCTN-ALLMEKKMDDYEPSPYFVWSVHLDG 133 >gi|52144823|ref|YP_082004.1| moaA/nifB/pqqE family protein [Bacillus cereus E33L] gi|300119045|ref|ZP_07056756.1| moaA/nifB/pqqE family protein [Bacillus cereus SJ1] gi|51978292|gb|AAU19842.1| probable moaA/nifB/pqqE family protein [Bacillus cereus E33L] gi|298723661|gb|EFI64392.1| moaA/nifB/pqqE family protein [Bacillus cereus SJ1] Length = 375 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|311029133|ref|ZP_07707223.1| putative Fe-S oxidoreductase, radical SAM superfamily protein [Bacillus sp. m3-13] Length = 374 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99 +C C + ++ L +EE R +TGGEP++ + Sbjct: 44 RCEHCAVGYTLQPKDPKA-LPIELLIQRLEEI-----PRLRSISITGGEPMMSMKSVNEY 97 Query: 100 DVPLIQALNKRGFEIAVETNGTIEP 124 VPL++ ++RG + +N T++ Sbjct: 98 VVPLLKYAHERGVRTQINSNLTLDL 122 >gi|309811257|ref|ZP_07705048.1| molybdenum cofactor biosynthesis protein A [Dermacoccus sp. Ellin185] gi|308434797|gb|EFP58638.1| molybdenum cofactor biosynthesis protein A [Dermacoccus sp. Ellin185] Length = 362 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 D+ + +C +C + +G R + +++ I E LTGGEPLL+ Sbjct: 52 DKCNLRCTYC----MPAEGVPLAPRDTLLASDEIVTVARIAVEAGIDEIRLTGGEPLLRP 107 Query: 100 DV-PLIQALNK 109 D+ L++ L Sbjct: 108 DIVDLVERLAA 118 >gi|307596089|ref|YP_003902406.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307551290|gb|ADN51355.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429] Length = 572 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 19/115 (16%) Query: 30 SGCNLWSGREQD----------RLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQW 78 GC L + + R + +C C F ++Q+ ++ Sbjct: 141 QGCGLCPVHKTNTVLAIIDVTNRCNMKCPVC---FANAYAAGYVYEPTLEQIEYMLRTFR 197 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVE--TNGTIEPPQGIDW 130 +GGEP L+ D+P +I+ GF+ +E TNG I ID+ Sbjct: 198 AQKPWAPNAIQFSGGEPTLRNDLPEIIRMAKALGFD-HIEVNTNG-IRLANDIDY 250 >gi|228906226|ref|ZP_04070113.1| dehydrogenase [Bacillus thuringiensis IBL 200] gi|228853382|gb|EEM98152.1| dehydrogenase [Bacillus thuringiensis IBL 200] Length = 375 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|228950973|ref|ZP_04113094.1| dehydrogenase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229077776|ref|ZP_04210403.1| dehydrogenase [Bacillus cereus Rock4-2] gi|228705504|gb|EEL57863.1| dehydrogenase [Bacillus cereus Rock4-2] gi|228808700|gb|EEM55198.1| dehydrogenase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 375 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|218960362|ref|YP_001740137.1| hypothetical protein CLOAM0012 [Candidatus Cloacamonas acidaminovorans] gi|167729019|emb|CAO79930.1| hypothetical protein CLOAM0012 [Candidatus Cloacamonas acidaminovorans] Length = 335 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 11/91 (12%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 L S D + +C +C+ F T N D LIE R ++G Sbjct: 57 PLLSVDITDACNLRCIYCNNPFFPYPRTM---MNQDVFKALIERLKRHPVSRIR---ISG 110 Query: 93 GEPLLQVDVPLIQALNKRGFEI---AVETNG 120 GEP L L + + ++ TNG Sbjct: 111 GEPTLHPQFD--TMLKEMSYYCKYLSIITNG 139 >gi|157163980|ref|YP_001466045.1| molybdenum cofactor biosynthesis protein A [Campylobacter concisus 13826] gi|166217240|sp|A7ZB87|MOAA_CAMC1 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|112801191|gb|EAT98535.1| molybdenum cofactor biosynthesis protein A [Campylobacter concisus 13826] Length = 322 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 10/84 (11%) Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 R + +CR+C T F ++L ++ G K+ R +TGGEPL++ Sbjct: 20 RCNFRCRYCMPTTPFSWTPKEN--LLTFEELFLFVKVAIDEGVKKIR---ITGGEPLVRK 74 Query: 100 DVP-LIQALNK--RGFEIAVETNG 120 D+ I+ ++ ++A+ TNG Sbjct: 75 DLDVFIKMISDYKPDIDLALTTNG 98 >gi|299139623|ref|ZP_07032797.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8] gi|298598551|gb|EFI54715.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8] Length = 351 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 11/89 (12%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R + + + +C CD Q G ++ A E G +E Sbjct: 27 VRL---PILLLNVHEHCNCRCVMCD----IWQRKDGKELDLVGFARHRESILQLGVQE-- 77 Query: 87 YCVLTGGEPLLQVDVP-LIQALNKRGFEI 114 VLTGGE LL + L L G I Sbjct: 78 -VVLTGGEALLHRNFEGLCSFLRDCGVRI 105 >gi|291539783|emb|CBL12894.1| Predicted Fe-S oxidoreductases [Roseburia intestinalis XB6B4] Length = 351 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 29/160 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN +R C ++L +I E + R + Sbjct: 22 CNFRCRHCFNRSGEHC------------FGERELTDEELMKIIVE---VADIAPRSLCIC 66 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151 GGEPLL+ D+ L K G +T+G ++ + G + + ELK Sbjct: 67 GGEPLLRKDI-----LIKMGKYYTEKTSG----RTSLNMVT----NGFLITEEVADELKE 113 Query: 152 V-FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAIS 190 F V VS + E QP +E + + Sbjct: 114 AGFRTVQVSLDGASAESHEWIRNQPGSFERAKEALRILVD 153 >gi|255658517|ref|ZP_05403926.1| nitrite reductase heme biosynthesis J protein [Mitsuokella multacida DSM 20544] gi|260849317|gb|EEX69324.1| nitrite reductase heme biosynthesis J protein [Mitsuokella multacida DSM 20544] Length = 396 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + A+ + T+ + +D LAD + + Sbjct: 47 CNLKCMHCYMQSDAK------KYKDELTTEEAKKFIDDLAD----------FHVPVLLFS 90 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GGEPL++ D L ++G + TNGT+ Sbjct: 91 GGEPLIRPDFFELAAYAQEKGVRPTLSTNGTL 122 >gi|222110300|ref|YP_002552564.1| radical sam enzyme, cfr family [Acidovorax ebreus TPSY] gi|221729744|gb|ACM32564.1| radical SAM enzyme, Cfr family [Acidovorax ebreus TPSY] Length = 383 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 20/104 (19%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL------IEEQWITGEKEGRYCV 89 Q + CRFC T G QG + LA L + ++ GE+ V Sbjct: 113 CISSQAGCAVGCRFCST---GHQGFSRNLTTGEILAQLWYAEHALRQRRGDGERVISNVV 169 Query: 90 LTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123 + G GEPL Q L+ AL G+ + V T+G + Sbjct: 170 MMGMGEPL-QNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVP 212 >gi|121593579|ref|YP_985475.1| radical SAM protein [Acidovorax sp. JS42] gi|205829704|sp|A1W574|RLMN_ACISJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|120605659|gb|ABM41399.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax sp. JS42] Length = 374 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 20/104 (19%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL------IEEQWITGEKEGRYCV 89 Q + CRFC T G QG + LA L + ++ GE+ V Sbjct: 104 CISSQAGCAVGCRFCST---GHQGFSRNLTTGEILAQLWYAEHALRQRRGDGERVISNVV 160 Query: 90 LTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123 + G GEPL Q L+ AL G+ + V T+G + Sbjct: 161 MMGMGEPL-QNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVP 203 >gi|49480103|ref|YP_034749.1| moaA/nifB/pqqE family protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|218901625|ref|YP_002449459.1| hypothetical protein BCAH820_0467 [Bacillus cereus AH820] gi|228925675|ref|ZP_04088762.1| dehydrogenase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229120083|ref|ZP_04249335.1| dehydrogenase [Bacillus cereus 95/8201] gi|49331659|gb|AAT62305.1| probable moaA/nifB/pqqE family protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|218536468|gb|ACK88866.1| conserved hypothetical protein [Bacillus cereus AH820] gi|228663321|gb|EEL18909.1| dehydrogenase [Bacillus cereus 95/8201] gi|228833950|gb|EEM79500.1| dehydrogenase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 375 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|55979980|ref|YP_143277.1| molybdenum cofactor biosynthesis protein A MoaA [Thermus thermophilus HB8] gi|55771393|dbj|BAD69834.1| molybdenum cofactor biosynthesis protein A (MoaA) [Thermus thermophilus HB8] Length = 336 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C G V+++ +E + G R+ T Sbjct: 33 CNL-----------HCLYC-HPLGLEMREPPGTLTVEEVDRFLEAASLLGLSSVRF---T 77 Query: 92 GGEPLLQVDVPLI--QALNKRGFE-IAVETNG 120 GGEPL++ ++P + +A K G E +A+ TNG Sbjct: 78 GGEPLVRKELPEMIARARAKEGVEDVAITTNG 109 >gi|229148819|ref|ZP_04277067.1| dehydrogenase [Bacillus cereus m1550] gi|228634613|gb|EEK91194.1| dehydrogenase [Bacillus cereus m1550] Length = 375 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|229182806|ref|ZP_04310045.1| dehydrogenase [Bacillus cereus BGSC 6E1] gi|228600686|gb|EEK58267.1| dehydrogenase [Bacillus cereus BGSC 6E1] Length = 375 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|196040113|ref|ZP_03107415.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] gi|196045287|ref|ZP_03112519.1| oxidoreductase, radical SAM superfamily [Bacillus cereus 03BB108] gi|228913169|ref|ZP_04076808.1| dehydrogenase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|301052137|ref|YP_003790348.1| putative moaA/nifB/pqqE family protein [Bacillus anthracis CI] gi|196023871|gb|EDX62546.1| oxidoreductase, radical SAM superfamily [Bacillus cereus 03BB108] gi|196028968|gb|EDX67573.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] gi|228846574|gb|EEM91587.1| dehydrogenase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300374306|gb|ADK03210.1| probable moaA/nifB/pqqE family protein [Bacillus cereus biovar anthracis str. CI] Length = 375 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|118476173|ref|YP_893324.1| radical SAM superfamily oxidoreductase [Bacillus thuringiensis str. Al Hakam] gi|225862462|ref|YP_002747840.1| oxidoreductase, radical SAM superfamily [Bacillus cereus 03BB102] gi|118415398|gb|ABK83817.1| oxidoreductase, radical SAM superfamily [Bacillus thuringiensis str. Al Hakam] gi|225788857|gb|ACO29074.1| oxidoreductase, radical SAM superfamily [Bacillus cereus 03BB102] Length = 375 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|57640788|ref|YP_183266.1| hypothetical protein TK0852 [Thermococcus kodakarensis KOD1] gi|57159112|dbj|BAD85042.1| hypothetical protein, conserved, radical SAM superfamily [Thermococcus kodakarensis KOD1] Length = 262 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 13/99 (13%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR---YNVDQLADLIEEQWITGE 82 F GCN R + C +T + GR +V+++ DL+++ +T Sbjct: 41 FDGCNWNCSFCVWRKVTRWSLCLPLETRRKLDYMWRTGRVRYLSVNEVVDLLKKARVTTA 100 Query: 83 KEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 G GGEP L ++ L++AL + G + + TNG Sbjct: 101 FLG------GGEPTLDPELKALMRALRREGIKPWLVTNG 133 >gi|42524721|ref|NP_970101.1| heme biosynthesis [Bdellovibrio bacteriovorus HD100] gi|39576931|emb|CAE78160.1| heme biosynthesis [Bdellovibrio bacteriovorus HD100] Length = 427 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 48/147 (32%), Gaps = 33/147 (22%) Query: 20 AGRVAVFCR------FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73 +GR++V R CNL +C +C G GT G + Sbjct: 67 SGRLSVGIRSLTINVTQICNL-----------KCTYC---AAGGDGTYGSAQTKINVEKT 112 Query: 74 IEEQW----ITGEKEGRYCVLTGGEPLLQVD--------VPLIQALNKRGFEIAVETNGT 121 + + GGEPLL D V L+ A ++ TNGT Sbjct: 113 LPQLKFFLERVPTGGRFNITFLGGEPLLYPDGIQEIGNYVRLMTAGQNVQASFSIVTNGT 172 Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQE 148 + + + + S K + + G E Sbjct: 173 LINEKTLKVLT-SLKTNITVSLDGPAE 198 >gi|75760084|ref|ZP_00740147.1| Thioredoxin-like oxidoreductases [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228977177|ref|ZP_04137576.1| dehydrogenase [Bacillus thuringiensis Bt407] gi|74492434|gb|EAO55587.1| Thioredoxin-like oxidoreductases [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228782486|gb|EEM30665.1| dehydrogenase [Bacillus thuringiensis Bt407] gi|326938204|gb|AEA14100.1| thioredoxin-like oxidoreductase [Bacillus thuringiensis serovar chinensis CT-43] Length = 375 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|47567247|ref|ZP_00237961.1| thioredoxin-like oxidoreductases [Bacillus cereus G9241] gi|228983679|ref|ZP_04143879.1| dehydrogenase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229042322|ref|ZP_04190072.1| dehydrogenase [Bacillus cereus AH676] gi|47556090|gb|EAL14427.1| thioredoxin-like oxidoreductases [Bacillus cereus G9241] gi|228726981|gb|EEL78188.1| dehydrogenase [Bacillus cereus AH676] gi|228776031|gb|EEM24397.1| dehydrogenase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 375 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|319941457|ref|ZP_08015785.1| molybdenum cofactor biosynthesis protein A [Sutterella wadsworthensis 3_1_45B] gi|319805077|gb|EFW01907.1| molybdenum cofactor biosynthesis protein A [Sutterella wadsworthensis 3_1_45B] Length = 389 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 21/112 (18%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 D + +CR+C + D++ + G ++ R LTGGEPL Sbjct: 70 DHCNFRCRYCMPKEKYAQNHNFLAMTELLTFDEILRVSRIAVANGIEKIR---LTGGEPL 126 Query: 97 LQVDVP-LIQALNK----RGFEI--AVETNGTIEP-------PQGIDWICVS 134 L+ + L+ L G I A+ TNG++ G+ I VS Sbjct: 127 LRKGIENLVAQLAALRTPAGKPIDLAMTTNGSLLIKKAQALKDAGLGRITVS 178 >gi|331646910|ref|ZP_08348009.1| putative radical SAM domain protein [Escherichia coli M605] gi|331044227|gb|EGI16358.1| putative radical SAM domain protein [Escherichia coli M605] Length = 478 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 40/90 (44%), Gaps = 8/90 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 + + +C C ++ G+K + + ++E+ + + L+GGEP+L Sbjct: 153 SKCNERCIHC---YI-PHGSKIKSMDTQHIYSILEQ---CKDMNVLHITLSGGEPMLHKG 205 Query: 101 V-PLIQALNKRGFEIAVETNGTIEPPQGID 129 +++ + F ++V TN T+ +D Sbjct: 206 FCSILKKCREYDFAVSVLTNLTLLTDDILD 235 >gi|291545179|emb|CBL18288.1| ribonucleoside-triphosphate reductase class III activase subunit [Ruminococcus sp. 18P13] Length = 168 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 25/93 (26%), Gaps = 21/93 (22%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F GC C C G + QL I+ + Sbjct: 22 TIFV--QGCP-----------HHCPGCHNPQT-HDFAGGTDTDCAQLLARIDANPLLDG- 66 Query: 84 EGRYCVLTGGEPLLQV--DVPLIQALNKRGFEI 114 +GGEP Q L L +RG I Sbjct: 67 ----VTFSGGEPFCQASVLAELGAKLRQRGLNI 95 >gi|218231727|ref|YP_002365264.1| hypothetical protein BCB4264_A0486 [Bacillus cereus B4264] gi|218159684|gb|ACK59676.1| conserved hypothetical protein [Bacillus cereus B4264] Length = 375 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|165870651|ref|ZP_02215304.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167634839|ref|ZP_02393158.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|167641253|ref|ZP_02399506.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|170688985|ref|ZP_02880186.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|177654528|ref|ZP_02936384.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190567633|ref|ZP_03020546.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|227813094|ref|YP_002813103.1| hypothetical protein BAMEG_0492 [Bacillus anthracis str. CDC 684] gi|254686810|ref|ZP_05150668.1| hypothetical protein BantC_23620 [Bacillus anthracis str. CNEVA-9066] gi|254724884|ref|ZP_05186667.1| hypothetical protein BantA1_20854 [Bacillus anthracis str. A1055] gi|254738964|ref|ZP_05196666.1| hypothetical protein BantWNA_27720 [Bacillus anthracis str. Western North America USA6153] gi|254744552|ref|ZP_05202231.1| hypothetical protein BantKB_26716 [Bacillus anthracis str. Kruger B] gi|254756190|ref|ZP_05208219.1| hypothetical protein BantV_27321 [Bacillus anthracis str. Vollum] gi|164713485|gb|EDR19009.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167510761|gb|EDR86154.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|167529913|gb|EDR92661.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|170667086|gb|EDT17848.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|172080640|gb|EDT65723.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190561420|gb|EDV15392.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|227003854|gb|ACP13597.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684] Length = 375 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|120405996|ref|YP_955825.1| molybdenum cofactor biosynthesis protein A [Mycobacterium vanbaalenii PYR-1] gi|119958814|gb|ABM15819.1| GTP cyclohydrolase subunit MoaA [Mycobacterium vanbaalenii PYR-1] Length = 353 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 65/189 (34%), Gaps = 34/189 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C +C G+ + N D+L L+ Sbjct: 43 CNL-----------RCTYC-MPAEGLDWLPSDEKLNPDELIRLLGVAVTRLGITS--VRF 88 Query: 91 TGGEPL----LQVDVPLIQALNKRGFEIAVETNGTIEPP-------QGIDWICVSPKAGC 139 TGGEPL L+ V AL R EI + TNG G+D I VS Sbjct: 89 TGGEPLVVPHLEDVVAATAALRPRP-EITLTTNGVGLAKRAAGLKRAGLDRINVSLDTVD 147 Query: 140 DLK---IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN- 195 + I V + + E + L P+ G L++ +L + +C ++ Sbjct: 148 PARFAAITRRDRFTEVVAGLRAAKEAGLDPVKVNAVLDPVSG--LDDVVSL-LRFCLEHG 204 Query: 196 PKWRLSVQT 204 + R+ Q Sbjct: 205 YQLRVIEQM 213 >gi|22298139|ref|NP_681386.1| putative heme d1 biosynthesis protein [Thermosynechococcus elongatus BP-1] gi|22294318|dbj|BAC08148.1| tll0596 [Thermosynechococcus elongatus BP-1] Length = 336 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 + GGEPLL + ++ L R + + TNG I + + SP + Sbjct: 72 GAPIVAIPGGEPLLHPQIDEIVSGLVARRKFVYLCTNG-ILLEENLHKFKPSPYFSFSVH 130 Query: 143 IKGGQE 148 + G +E Sbjct: 131 LDGLRE 136 >gi|307105078|gb|EFN53329.1| hypothetical protein CHLNCDRAFT_49033 [Chlorella variabilis] Length = 335 Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C G+ T G + + + ++ G + LT Sbjct: 21 CNL-----------RCLYC-MPEEGVDLTPGRQLLSTEEVMRVARLFVAGGVDK--IRLT 66 Query: 92 GGEPLLQVDV-PLIQALNKR-GFE-IAVETNG 120 GGEP L+ D+ L L++ G + + +NG Sbjct: 67 GGEPTLRPDLVELTGQLSQLPGMRAVGITSNG 98 >gi|206967566|ref|ZP_03228522.1| conserved hypothetical protein [Bacillus cereus AH1134] gi|228919345|ref|ZP_04082714.1| dehydrogenase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229068169|ref|ZP_04201476.1| dehydrogenase [Bacillus cereus F65185] gi|229177006|ref|ZP_04304401.1| dehydrogenase [Bacillus cereus 172560W] gi|229188686|ref|ZP_04315725.1| dehydrogenase [Bacillus cereus ATCC 10876] gi|206736486|gb|EDZ53633.1| conserved hypothetical protein [Bacillus cereus AH1134] gi|228594875|gb|EEK52655.1| dehydrogenase [Bacillus cereus ATCC 10876] gi|228606481|gb|EEK63907.1| dehydrogenase [Bacillus cereus 172560W] gi|228714983|gb|EEL66851.1| dehydrogenase [Bacillus cereus F65185] gi|228840281|gb|EEM85553.1| dehydrogenase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 375 Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|150400924|ref|YP_001324690.1| tRNA-modifying enzyme [Methanococcus aeolicus Nankai-3] gi|150013627|gb|ABR56078.1| Wyosine base formation domain protein [Methanococcus aeolicus Nankai-3] Length = 319 Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 70 LADLIEEQWITGEKEGRYCVLT-GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 + D I EQ ++ L+ GEP + LI+ +K+GF V +NG Sbjct: 119 ILDRIGEQKYNELANPKHVALSLSGEPTIYPYFKELIEIFHKKGFSTFVVSNG 171 >gi|30022797|ref|NP_834428.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC 14579] gi|296505191|ref|YP_003666891.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis BMB171] gi|29898356|gb|AAP11629.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC 14579] gi|296326243|gb|ADH09171.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis BMB171] Length = 337 Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 14/88 (15%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C +D+ ++ D++ L + G ++ R +TGGE Sbjct: 22 DRCNFRCTYCMPAEIFGSDYAFLKDEF--LLTFDEIERLAKLFVNIGVRKIR---ITGGE 76 Query: 95 PLLQVDV-PLIQALNKRG--FEIAVETN 119 PLL+ D+ LI L K +I + TN Sbjct: 77 PLLRKDLTKLIARLVKIDGLIDIGLTTN 104 >gi|15896050|ref|NP_349399.1| MoaA/NirJ family Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824] gi|15025835|gb|AAK80739.1|AE007777_3 MoaA/NirJ family Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824] gi|325510204|gb|ADZ21840.1| MoaA/NirJ family Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018] Length = 335 Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 7/78 (8%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104 C C + G + + LI+E G + + +GGEPLL+ D+ LI Sbjct: 14 HCEHC---YRDSGKGAEGELSTTEGKKLIDEIAKAG---FKIMIFSGGEPLLRDDIYELI 67 Query: 105 QALNKRGFEIAVETNGTI 122 +K G + +NGT+ Sbjct: 68 GYASKIGLRCVIGSNGTL 85 >gi|229592098|ref|YP_002874217.1| putative molybdenum cofactor biosynthesis protein A [Pseudomonas fluorescens SBW25] gi|229363964|emb|CAY51493.1| putative molybdenum cofactor biosynthesis protein A [Pseudomonas fluorescens SBW25] Length = 322 Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 20/120 (16%) Query: 90 LTGGEPLLQVDVP-LIQALNKRGFE-IAVETNGT-------IEPPQGIDWICVS-----P 135 +TGGEPL+ + + A+ + G I++ TNG + GI I VS P Sbjct: 65 ITGGEPLVSPKLEAFMGAVGQMGLSDISLTTNGQLLARKLPLLVEAGIKRINVSLDTLDP 124 Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 A + G +L V ++ + I + ++ P+ G L++ L + YC + Sbjct: 125 DAFRSIA--RGGDLATVLDGMDQARAAGIKI---KVNMVPLRGQNLDQVMPL-LDYCLER 178 >gi|242280416|ref|YP_002992545.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfovibrio salexigens DSM 2638] gi|242123310|gb|ACS81006.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfovibrio salexigens DSM 2638] Length = 226 Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 16/78 (20%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 VF GCNL C C R ++ D ++ K Sbjct: 28 CVFF-LGGCNL-----------NCPTC---HNFDMAWNMERLHLLSRED-MKSFLRNRAK 71 Query: 84 EGRYCVLTGGEPLLQVDV 101 +TGGEP ++ Sbjct: 72 WLDGVTITGGEPTTVPNL 89 >gi|46579965|ref|YP_010773.1| radical SAM domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|46449381|gb|AAS96032.1| radical SAM domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|311234037|gb|ADP86891.1| Radical SAM domain protein [Desulfovibrio vulgaris RCH1] Length = 543 Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 32/111 (28%), Gaps = 23/111 (20%) Query: 31 GCNLWSGRE--------------QDRLSAQCRFC------DTDFVGIQGTKGGRYNVDQL 70 GC G R + +CR+C D G + L Sbjct: 81 GCPFDCGLCPQHNQHTCTAVFEVTTRCNLRCRYCFAAAQDDETQTLQPSAHVGDPPLHTL 140 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 L+E L+GGEP L ++ + + + TNG Sbjct: 141 VALLEAVRQKTGPC--NIQLSGGEPTLRHDLCDIVSHARRLFPFVQLNTNG 189 >gi|322385886|ref|ZP_08059528.1| pyruvate formate-lyase activating enzyme [Streptococcus cristatus ATCC 51100] gi|321270065|gb|EFX52983.1| pyruvate formate-lyase activating enzyme [Streptococcus cristatus ATCC 51100] Length = 265 Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 27/102 (26%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC++ +C++C DT + + + + D+++E Sbjct: 33 VF--LQGCHM-----------RCQYCHNPDT-----WEMETNKSQLRTVDDILQEALRYK 74 Query: 82 EKEGRY--CVLTGGEPLLQVDVPLIQAL---NKRGFEIAVET 118 G ++GGE LLQ+D LI + G ++T Sbjct: 75 GFWGNKGGITVSGGEALLQIDF-LIAFFTKAKELGIHCTLDT 115 >gi|302035939|ref|YP_003796261.1| radical SAM superfamily protein [Candidatus Nitrospira defluvii] gi|300604003|emb|CBK40335.1| radical SAM superfamily protein, putative Coenzyme PQQ synthesis protein E [Candidatus Nitrospira defluvii] Length = 467 Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 16/91 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C D G + ++ LI++ + V+T Sbjct: 59 CNL-----------KCDHCYLDATTKAGGGSDELSTEECFRLIDQIAEVNKGC--LLVIT 105 Query: 92 GGEPLLQVDVPLIQALNK--RGFEIAVETNG 120 GGEPL++ D+ L A + GF + TNG Sbjct: 106 GGEPLVRPDI-LDIARHAVGLGFIVVFGTNG 135 >gi|206901063|ref|YP_002250105.1| radical SAM domain protein [Dictyoglomus thermophilum H-6-12] gi|206740166|gb|ACI19224.1| radical SAM domain protein [Dictyoglomus thermophilum H-6-12] Length = 465 Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 44 SAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101 + +C + C + D + ++EE + G R LTGGEP + ++ Sbjct: 135 TYRCNYQCKHCYNNSSIYMLSEMKTDVILSILEEAYKLG---IREIELTGGEPTVYSNIE 191 Query: 102 PLIQALNKRGFE-IAVETNGT 121 ++ L FE I + TNG+ Sbjct: 192 EFLKKLFTYNFELIGLLTNGS 212 >gi|167747476|ref|ZP_02419603.1| hypothetical protein ANACAC_02197 [Anaerostipes caccae DSM 14662] gi|167652838|gb|EDR96967.1| hypothetical protein ANACAC_02197 [Anaerostipes caccae DSM 14662] Length = 362 Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 15/102 (14%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R S C + G Q D+ + G + +L Sbjct: 69 CNLHCKGCYARASGACA---------EELHEGELTGAQWDDIFGQAEKLG---ISFILLA 116 Query: 92 GGEPLLQVDVPLIQALNKRG-FEIAVETNGTIEPPQGIDWIC 132 GGEPL++ DV +K+ F + TNGTI + Sbjct: 117 GGEPLMRRDVIESAGRHKKVIFPVF--TNGTIMQEDCLTLFS 156 >gi|121534167|ref|ZP_01665992.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1] gi|121307270|gb|EAX48187.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1] Length = 413 Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 11/90 (12%) Query: 46 QCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPL 103 +C C + G D+ LI E G ++ GGEPLL L Sbjct: 109 RCLHC---YATSGPCAGYDAVPHDRWLSLITEARQAGATAIQFI---GGEPLLYPRWQEL 162 Query: 104 IQALNKRGFEIAVE--TNGTIEPPQGIDWI 131 Q + G+E +E TN T+ I ++ Sbjct: 163 AQRARQDGYE-FIEIFTNATLIDDDCIKFV 191 >gi|330834762|ref|YP_004409490.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4] gi|329566901|gb|AEB95006.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4] Length = 324 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 25/93 (26%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C FC + + G + +QL +I+ VL Sbjct: 37 CNL-----------RCTFCNPSYYSGTLEEG----STEQLKKVIDNL------RSSVIVL 75 Query: 91 T--GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 + GGEP + D + L++ + F + + TNG Sbjct: 76 SFEGGEPTTRPDILELLKYAHDGSFYVMLTTNG 108 >gi|329935779|ref|ZP_08285583.1| Transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|329304770|gb|EGG48644.1| Transcriptional regulator [Streptomyces griseoaurantiacus M045] Length = 797 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 11/66 (16%) Query: 40 QDRLSAQCRFCDTDFVGIQGTKGGR-----YNVDQL---ADLIEEQWITGEKEGRYCVLT 91 R +C C +V + R + D L A I E + + VL Sbjct: 16 HSRCDLRCDHC---YVYTHADRSWRGRPVTMSEDTLRLAAARIAEHAVAHRLPRVHVVLH 72 Query: 92 GGEPLL 97 GGEPLL Sbjct: 73 GGEPLL 78 >gi|322384052|ref|ZP_08057775.1| Fe-S oxidoreductase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151249|gb|EFX44543.1| Fe-S oxidoreductase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 374 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 23/99 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN+ C DT + ++G + +D + ++E + +T Sbjct: 44 CNMRC--------EHCAVGDT----LTASEGSKLPLDLIFKRLDEV-----EHLETISIT 86 Query: 92 GGEPLLQVD------VPLIQALNKRGFEIAVETNGTIEP 124 GGEP + +PL++ +RG + +N T++ Sbjct: 87 GGEPTFHLKTVKDIIIPLLKYAKERGVRSQLNSNLTLDL 125 >gi|269120295|ref|YP_003308472.1| molybdenum cofactor biosynthesis protein A [Sebaldella termitidis ATCC 33386] gi|268614173|gb|ACZ08541.1| molybdenum cofactor biosynthesis protein A [Sebaldella termitidis ATCC 33386] Length = 327 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 12/94 (12%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +C +C +F + +D+ LI G K+ R +TG Sbjct: 10 NYLRVSVTDRCNLRCVYCLPEFSKDFIDESKLLTIDEYFRLIRILGNLGIKKVR---ITG 66 Query: 93 GEPLLQVDVP-LIQALNKRGFEIAVE-----TNG 120 GEPL++ +P LI+++N +E TNG Sbjct: 67 GEPLVRRGIPGLIKSINNLE---NIEETAMTTNG 97 >gi|224543515|ref|ZP_03684054.1| hypothetical protein CATMIT_02724 [Catenibacterium mitsuokai DSM 15897] gi|224523642|gb|EEF92747.1| hypothetical protein CATMIT_02724 [Catenibacterium mitsuokai DSM 15897] Length = 439 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 22/97 (22%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 +GCN A+C +C +G R N+D A + E Sbjct: 95 TTGCN-----------ARCYYC-----FEKGAVQKRMNLDT-ARAVAEYIFQNHDPEHLV 137 Query: 89 V-LTGGEPLLQVDV--PLIQALNKRG--FEIAVETNG 120 + GGEPLL+ +++ L+ RG F+ + TNG Sbjct: 138 IQWFGGEPLLEPKTISYIVEYLSSRGVSFDSKIITNG 174 >gi|222445142|ref|ZP_03607657.1| hypothetical protein METSMIALI_00763 [Methanobrevibacter smithii DSM 2375] gi|222434707|gb|EEE41872.1| hypothetical protein METSMIALI_00763 [Methanobrevibacter smithii DSM 2375] Length = 498 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGRYCV 89 CNL +C C F G Y D++ +++ Sbjct: 96 CNL-----------RCPVC---FAN-AAVSGRLYEPTQDEIREMLRNLRNLKPHPTPAIQ 140 Query: 90 LTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120 GGEP ++ D+ L+ + GF + + TNG Sbjct: 141 YAGGEPTVRKDLVELVAMAKEEGFTHVQIATNG 173 >gi|163759697|ref|ZP_02166782.1| molybdenum cofactor biosynthesis protein A [Hoeflea phototrophica DFL-43] gi|162283294|gb|EDQ33580.1| molybdenum cofactor biosynthesis protein A [Hoeflea phototrophica DFL-43] Length = 345 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 54/151 (35%), Gaps = 24/151 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C + T + ++ L +L + EK R LTGGEPL++ + Sbjct: 34 DRCDFRCTYC----MAENMTFLPKKDLLTLEELDRLCTVFVEKGVRKIRLTGGEPLVRKN 89 Query: 101 V-PLIQAL---NKRGF--EIAVETNG---TIEPPQGID---------WICVSPKAGCDLK 142 + LI+ L G E+ + TNG T + D + P Sbjct: 90 IMQLIRGLSRHIDAGRMDEVTLTTNGSQLTRFASELYDCGVRRINVSIDTLDPDKFRQ-- 147 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSL 173 I EL V V + + +L Sbjct: 148 ITRWGELAKVLDGVAAAQAAGLKIKINAVAL 178 >gi|148642909|ref|YP_001273422.1| molybdenum cofactor biosynthesis-related protein, MoaA [Methanobrevibacter smithii ATCC 35061] gi|148551926|gb|ABQ87054.1| molybdenum cofactor biosynthesis-related protein, MoaA [Methanobrevibacter smithii ATCC 35061] Length = 498 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGRYCV 89 CNL +C C F G Y D++ +++ Sbjct: 96 CNL-----------RCPVC---FAN-AAVSGRLYEPTQDEIREMLRNLRNLKPHPTPAIQ 140 Query: 90 LTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120 GGEP ++ D+ L+ + GF + + TNG Sbjct: 141 YAGGEPTVRKDLVELVAMAKEEGFTHVQIATNG 173 >gi|90406682|ref|ZP_01214875.1| pyruvate formate-lyase activating enzyme [Psychromonas sp. CNPT3] gi|90312135|gb|EAS40227.1| pyruvate formate-lyase activating enzyme [Psychromonas sp. CNPT3] Length = 288 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 46/149 (30%) Query: 22 RVAVFCRFSGCNLWSGREQD------------------------------RLSAQCRFCD 51 R +F GCN + S C CD Sbjct: 25 RAVIF--LQGCNYQCKTCHNPQTINICDHCALCVAPCPAQALTVVSGKVVWDSQLCIGCD 82 Query: 52 --TDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQA 106 D Q + R++V QL + ++E+ + L+GGE LQ+ + L +A Sbjct: 83 NCIDICPTQSSPKVRRHSVRQLLERLKEKQMFLSG----VTLSGGESTLQLPFIIELFKA 138 Query: 107 LNK----RGFEIAVETNGTIEPPQGIDWI 131 + +++NG++ QG D + Sbjct: 139 IKSCPELSHLTCFIDSNGSLSA-QGWDRV 166 >gi|30018672|ref|NP_830303.1| thioredoxin-like oxidoreductase [Bacillus cereus ATCC 14579] gi|228956898|ref|ZP_04118679.1| dehydrogenase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229108087|ref|ZP_04237712.1| dehydrogenase [Bacillus cereus Rock1-15] gi|229125914|ref|ZP_04254939.1| dehydrogenase [Bacillus cereus BDRD-Cer4] gi|229143207|ref|ZP_04271639.1| dehydrogenase [Bacillus cereus BDRD-ST24] gi|296501246|ref|YP_003662946.1| thioredoxin-like oxidoreductase [Bacillus thuringiensis BMB171] gi|29894213|gb|AAP07504.1| Thioredoxin-like oxidoreductases [Bacillus cereus ATCC 14579] gi|228640288|gb|EEK96686.1| dehydrogenase [Bacillus cereus BDRD-ST24] gi|228657572|gb|EEL13385.1| dehydrogenase [Bacillus cereus BDRD-Cer4] gi|228675362|gb|EEL30581.1| dehydrogenase [Bacillus cereus Rock1-15] gi|228802741|gb|EEM49577.1| dehydrogenase [Bacillus thuringiensis serovar pakistani str. T13001] gi|296322298|gb|ADH05226.1| thioredoxin-like oxidoreductase [Bacillus thuringiensis BMB171] Length = 375 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|326772988|ref|ZP_08232272.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Actinomyces viscosus C505] gi|326637620|gb|EGE38522.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Actinomyces viscosus C505] Length = 236 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 36/124 (29%), Gaps = 26/124 (20%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC C +C + R + + Sbjct: 19 TATVF--LQGCP-----------WNCFYC-----HNRDLIPARTPGQVAWEEVRALLRRR 60 Query: 82 EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-------PQGIDWICV 133 VLTGGE L Q + + + GF++ + T G +DW+ + Sbjct: 61 RGLLDGVVLTGGEALRQDALADAAREVIDMGFQVGLHTAGPYPRRLRDMIEAGFVDWVGL 120 Query: 134 SPKA 137 KA Sbjct: 121 DIKA 124 >gi|256397055|ref|YP_003118619.1| radical SAM domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256363281|gb|ACU76778.1| Radical SAM domain protein [Catenulispora acidiphila DSM 44928] Length = 794 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 33/113 (29%), Gaps = 23/113 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL----ADLIEEQWITGEKEGRY 87 C+L +A + R+ D++ A+ I E Sbjct: 18 CDLACDHCYVYEAADTSW----------RHKPRFMTDEIVRRTAERIAEHATAHRLPAVA 67 Query: 88 CVLTGGEPLL-------QVDVPLIQALNKRGFEI--AVETNGTIEPPQGIDWI 131 VL GGEPLL L + G + + TNG + D Sbjct: 68 LVLHGGEPLLLGPTRMRATLTTLRDVIESAGCAVDLRIHTNGVRLTSEYCDLF 120 >gi|269957895|ref|YP_003327684.1| Radical SAM domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269306576|gb|ACZ32126.1| Radical SAM domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 376 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP- 102 CR C ++ G Q ++++ G+ + V+TGG+PL + D+ Sbjct: 40 GLACRHC--RAEAVRQPLPGELTTRQALAVLDQIQGFGD-PLPHVVMTGGDPLRRADLDL 96 Query: 103 LIQALNKRGFEIAV 116 LI A +RG +++ Sbjct: 97 LIDAATERGIGVSL 110 >gi|323700863|ref|ZP_08112775.1| Radical SAM domain protein [Desulfovibrio sp. ND132] gi|323460795|gb|EGB16660.1| Radical SAM domain protein [Desulfovibrio desulfuricans ND132] Length = 397 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 20/97 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGR 86 CNL +C C + G + + DQ ++I++ + Sbjct: 47 TQRCNL-----------KCVHC---YAQAIDPSGHKDPISTDQAKEMIDDL---AQFGAP 89 Query: 87 YCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122 + +GGEPL+ + V L + +G + TNGT+ Sbjct: 90 VLLFSGGEPLVREDLVELAKYATTQGMRAVISTNGTL 126 >gi|300312938|ref|YP_003777030.1| molybdenum cofactor biosynthesis enzyme A protein [Herbaspirillum seropedicae SmR1] gi|300075723|gb|ADJ65122.1| molybdenum cofactor biosynthesis enzyme A protein [Herbaspirillum seropedicae SmR1] Length = 333 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Query: 41 DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR +C +C G + D+++ ++ G R LTGGEPLL+ Sbjct: 28 DRCDLRCSYCLPKGHTGFE-EPQNWLRFDEISRVVAAFARLGAGRVR---LTGGEPLLRR 83 Query: 100 DVPLIQA 106 + + A Sbjct: 84 GLATLAA 90 >gi|296875656|ref|ZP_06899725.1| probable transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296433340|gb|EFH19118.1| probable transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 431 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 13/84 (15%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-----QVD 100 +C++C + + D + ++E+ +G+ + GGEPLL + Sbjct: 92 RCKYC---YEKFENIAMSTETEDAIVQFLKEKLQSGKYKYLSVGWFGGEPLLGYKTIKRL 148 Query: 101 VPLIQALNKRGFEIA----VETNG 120 P+ L ++ ++I + TNG Sbjct: 149 SPVFIDLCEK-YQIHYQSAITTNG 171 >gi|291294660|ref|YP_003506058.1| molybdenum cofactor biosynthesis protein A [Meiothermus ruber DSM 1279] gi|290469619|gb|ADD27038.1| molybdenum cofactor biosynthesis protein A [Meiothermus ruber DSM 1279] Length = 331 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 17/91 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C Q G +V+ + + G + R+ T Sbjct: 29 CNL-----------HCLYC-HPLGWEQSEPPGTISVEDTRHFLRAMQLLGLESVRF---T 73 Query: 92 GGEPLLQVDVP-LIQALNKRGFE-IAVETNG 120 GGEPL++ ++P +I A ++ G IA+ TNG Sbjct: 74 GGEPLVRKELPQMIAAASELGIPDIAITTNG 104 >gi|159044234|ref|YP_001533028.1| hypothetical protein Dshi_1685 [Dinoroseobacter shibae DFL 12] gi|157911994|gb|ABV93427.1| hypothetical protein Dshi_1685 [Dinoroseobacter shibae DFL 12] Length = 314 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 8/89 (8%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCVLT 91 LW + +C C ++ T ++ D +++ R T Sbjct: 34 LWFNT-GTLCNIECANC---YIESSPTNDRLVYITAAEVTDYLDQLEDRNW-GVREIAFT 88 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETN 119 GGEP + + + + +A RG+E+ + TN Sbjct: 89 GGEPFMNPEMIEMTEAALARGYEVLILTN 117 >gi|119714837|ref|YP_921802.1| molybdenum cofactor biosynthesis protein A [Nocardioides sp. JS614] gi|119535498|gb|ABL80115.1| GTP cyclohydrolase subunit MoaA [Nocardioides sp. JS614] Length = 329 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 5/81 (6%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C G+ + D++ LI R TGGEPLL+ Sbjct: 22 DRCNLRCNYC-MPAEGLDWLPTEQTLTDDEIVRLI--TIGVEMLGIREVRFTGGEPLLRR 78 Query: 100 -DVPLIQALNKRGFEIAVETN 119 V ++ + G E ++ TN Sbjct: 79 GLVDIVARTHALGVETSLTTN 99 >gi|315634328|ref|ZP_07889615.1| molybdenum cofactor biosynthesis protein A [Aggregatibacter segnis ATCC 33393] gi|315476918|gb|EFU67663.1| molybdenum cofactor biosynthesis protein A [Aggregatibacter segnis ATCC 33393] Length = 337 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 6/83 (7%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D + +C +C D + K +D++ L+ + G ++ R +TGGEP L+ D Sbjct: 31 DVCNFRCNYCLPDGYQPEPNKPSFLTLDEIRRLVSSFAVMGTEKVR---ITGGEPTLRKD 87 Query: 101 -VPLIQALNKRG--FEIAVETNG 120 +P+++++ +IA+ TNG Sbjct: 88 FLPIVESIRGIDGIKQIALTTNG 110 >gi|307354426|ref|YP_003895477.1| Radical SAM domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307157659|gb|ADN37039.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571] Length = 387 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 21/69 (30%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GC ++CR+C R ++D + D++ W+ K+ + Sbjct: 14 GCP-----------SRCRYC-----WSSDVNSPRMSIDTIKDVVA--WMKDLKDNQ-VTF 54 Query: 91 T--GGEPLL 97 T GGEPLL Sbjct: 55 TFHGGEPLL 63 >gi|262369556|ref|ZP_06062884.1| molybdopterin biosynthesis protein [Acinetobacter johnsonii SH046] gi|262315624|gb|EEY96663.1| molybdopterin biosynthesis protein [Acinetobacter johnsonii SH046] Length = 331 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 9/67 (13%) Query: 44 SAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVD 100 + +C +C DT + ++ +L+ + R+ LTGGEPL+ Q Sbjct: 32 TDRCSYCMPDTP------EWLAKKDILSFEELLTFCEMMVSLGIRHIRLTGGEPLMRQGV 85 Query: 101 VPLIQAL 107 V I AL Sbjct: 86 VNFIDAL 92 >gi|228952519|ref|ZP_04114596.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807130|gb|EEM53672.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 337 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D F+ + +++ L G + R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPDYAFLQEEC----LLTFNEIERLARLFISMGVNKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQAL-NKRGFE-IAVETNG 120 GEPLL+ D+P LI L N G + I + TNG Sbjct: 75 GEPLLRKDLPKLIARLTNLEGLKDIGLTTNG 105 >gi|229079338|ref|ZP_04211882.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock4-2] gi|228704006|gb|EEL56448.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock4-2] Length = 333 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 18/91 (19%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D F+ + +++ L G + R LTG Sbjct: 18 DRCNFRCTYCMPAEVFGPDYAFLQEEC----LLTFNEIERLARLFISMGVNKIR---LTG 70 Query: 93 GEPLLQVDVP-LIQAL-NKRGFE-IAVETNG 120 GEPLL+ D+P LI L N G + I + TNG Sbjct: 71 GEPLLRKDLPKLIARLTNLEGLKDIGLTTNG 101 >gi|229020961|ref|ZP_04177648.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1273] gi|229023633|ref|ZP_04180126.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1272] gi|228737669|gb|EEL88172.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1272] gi|228740314|gb|EEL90625.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1273] Length = 306 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-R 110 D+ +Q D++ L G + R LTGGEPLL+ D+P LI L K Sbjct: 9 DYAFLQEEF--LLTFDEIERLARLFISMGVNKIR---LTGGEPLLRKDLPKLIARLAKLE 63 Query: 111 GFE-IAVETNG 120 G + I + TNG Sbjct: 64 GLKDIGLTTNG 74 >gi|119872519|ref|YP_930526.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM 4184] gi|119673927|gb|ABL88183.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184] Length = 573 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 6/90 (6%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 L +R + C C F ++Q+ ++ L+G Sbjct: 147 LAIIDVTNRCNMACPIC---FANAGAAGYVYEPTLEQIEYMLRTLRAQKPWAPNAVQLSG 203 Query: 93 GEPLLQVDVPLIQALNKRGFEIAVE--TNG 120 GEP L+ D+P I + KR + VE TNG Sbjct: 204 GEPTLRDDLPEIIRIAKRLGFVHVEVNTNG 233 >gi|291455502|ref|ZP_06594892.1| molybdenum cofactor biosynthesis protein A [Streptomyces albus J1074] gi|291358451|gb|EFE85353.1| molybdenum cofactor biosynthesis protein A [Streptomyces albus J1074] Length = 326 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 7/84 (8%) Query: 41 DRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C G+ K G D++ L+ T LTGGEPLL+ Sbjct: 18 DRCNLRCAYC-MPAEGLDWLPKAGLLTDDEVVRLVS--TATRRLGITEVRLTGGEPLLRR 74 Query: 100 DVP-LIQAL--NKRGFEIAVETNG 120 +P L+ L E+++ TNG Sbjct: 75 GLPALVARLTALDPAPELSLTTNG 98 >gi|316932978|ref|YP_004107960.1| hopanoid biosynthesis associated radical SAM protein HpnH [Rhodopseudomonas palustris DX-1] gi|315600692|gb|ADU43227.1| hopanoid biosynthesis associated radical SAM protein HpnH [Rhodopseudomonas palustris DX-1] Length = 386 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C R + D EE + Sbjct: 38 CNLAC--------AGCG----KIDYPDAILNRRMTAQECWDAAEECG------APMVAIP 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ ++ +++ L R +++ TN + + + SP + + G +E Sbjct: 80 GGEPLIHKEIGEIVRGLVARKKFVSLCTN-ALLLEKKLHLFEPSPYLFFSVHLDGLKE 136 >gi|239983692|ref|ZP_04706216.1| molybdenum cofactor biosynthesis protein A [Streptomyces albus J1074] Length = 335 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 7/84 (8%) Query: 41 DRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C G+ K G D++ L+ T LTGGEPLL+ Sbjct: 27 DRCNLRCAYC-MPAEGLDWLPKAGLLTDDEVVRLVS--TATRRLGITEVRLTGGEPLLRR 83 Query: 100 DVP-LIQAL--NKRGFEIAVETNG 120 +P L+ L E+++ TNG Sbjct: 84 GLPALVARLTALDPAPELSLTTNG 107 >gi|153003729|ref|YP_001378054.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter sp. Fw109-5] gi|152027302|gb|ABS25070.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter sp. Fw109-5] Length = 351 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 15/86 (17%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR + +C +C + D L A+L + R LTGGEP L Sbjct: 49 DRCNFRCTYC---------SPAAHEPPDALLSRAELARLFRLFAALGVRRVRLTGGEPTL 99 Query: 98 QVD-VPLI-QALNKRGFE-IAVETNG 120 + D V L+ A G E +A+ TNG Sbjct: 100 RKDVVELVADAAGTPGIEDVAITTNG 125 >gi|222152595|ref|YP_002561770.1| pyruvate formate-lyase activating enzyme [Streptococcus uberis 0140J] gi|222113406|emb|CAR41070.1| pyruvate formate-lyase activating enzyme [Streptococcus uberis 0140J] Length = 263 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 34/124 (27%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62 E F ++ G G RF GC +C++C T Sbjct: 16 TESFGSVDGPG---------IRFIIFMQGC-----------KMRCQYCHNPDTWEMETNK 55 Query: 63 GRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQAL----NKRGFEIAV 116 R ++D+++E G+ ++GGE +LQ+D I AL K G + Sbjct: 56 SR--ERTVSDVLKEALQYRHFWGKNGGITVSGGEAMLQID--FITALFIEAKKLGIHTTL 111 Query: 117 ETNG 120 +T G Sbjct: 112 DTCG 115 >gi|116071861|ref|ZP_01469129.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp. BL107] gi|116065484|gb|EAU71242.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp. BL107] Length = 303 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 13/79 (16%) Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQAL---NKRGF-EIAVETNGTIE 123 L D + + LTGGEPLL PL+ A+ G E+A+ TNG + Sbjct: 3 DLQDQLRLIRVACSLGVHTVRLTGGEPLLSDRLEPLLAAIAFDRPAGLKELALTTNGVLL 62 Query: 124 PPQ--------GIDWICVS 134 P+ G+D I +S Sbjct: 63 SPERALRLKRAGLDRITIS 81 >gi|46200290|ref|YP_005957.1| molybdenum cofactor biosynthesis protein A [Thermus thermophilus HB27] gi|46197918|gb|AAS82330.1| molybdenum cofactor biosynthesis protein A [Thermus thermophilus HB27] Length = 341 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C G V+++ +E + G R+ T Sbjct: 38 CNL-----------HCLYC-HPLGLEMREPPGTLTVEEVDRFLEAASLLGLSSVRF---T 82 Query: 92 GGEPLLQVDVPLI--QALNKRGFE-IAVETNG 120 GGEPL++ ++P + +A K G E +A+ TNG Sbjct: 83 GGEPLVRKELPEMIARARAKEGVEDVAITTNG 114 >gi|30794977|ref|NP_851427.1| pyrroloquinoline quinone biosynthesis protein PqqE [Streptomyces rochei] gi|32363222|sp|P59749|PQQE_STRRO RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|30698350|dbj|BAC76463.1| pyrroloquinoline quinone biosynthesis protein E [Streptomyces rochei] Length = 364 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 6/80 (7%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R C +C ++ +Q D++ + G + + +GGEPL + D+ Sbjct: 19 RCPLHCPYCSNPLELVRRE--AELTCEQWTDILTQARELGVVQMHF---SGGEPLARPDL 73 Query: 102 P-LIQALNKRGFEIAVETNG 120 P L+ + G + + T+G Sbjct: 74 PDLVGHARRLGAYVNLVTSG 93 >gi|303233841|ref|ZP_07320494.1| molybdenum cofactor biosynthesis protein A [Finegoldia magna BVS033A4] gi|302495036|gb|EFL54789.1| molybdenum cofactor biosynthesis protein A [Finegoldia magna BVS033A4] Length = 315 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D+ + +C++C + +D+ ++E G K+ R LTGGEPL++ Sbjct: 18 DKCNLRCKYCMPEEGIAHLNHDEILTIDETLKIVEVFKDLGIKKVR---LTGGEPLVRNG 74 Query: 101 -VPLIQALNKRGF-EIAVETN 119 + L++ + G EI + TN Sbjct: 75 ILDLVKGIKDMGIEEICMTTN 95 >gi|215402669|ref|ZP_03414850.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis 02_1987] gi|289744599|ref|ZP_06503977.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis 02_1987] gi|289685127|gb|EFD52615.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis 02_1987] Length = 322 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 16/106 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-Q 98 DR + +C +C G++ G + D+LA LI TGGEPLL Sbjct: 47 DRCNLRCSYC-MPERGLRWLPGEQLLRPDELARLI--HIAVTRLGVTSVRFTGGEPLLAH 103 Query: 99 VDVPLIQA---LNKRGFEIAVETNGT-------IEPPQGIDWICVS 134 ++ A L R EI++ TNG G+D + VS Sbjct: 104 HLDEVVAATARLRPRP-EISLTTNGVGLARRAGALAEAGLDRVNVS 148 >gi|254473488|ref|ZP_05086885.1| molybdenum cofactor biosynthesis protein A [Pseudovibrio sp. JE062] gi|211957604|gb|EEA92807.1| molybdenum cofactor biosynthesis protein A [Pseudovibrio sp. JE062] Length = 344 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 10/87 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C ++ + K +V L +L + EK R LTGGEPL++ + Sbjct: 33 DRCDLRCVYCMSEHMTFLPKK----DVLSLEELDRLCTVFIEKGVRKIRLTGGEPLVRKN 88 Query: 101 V-PLIQALNKR---GF--EIAVETNGT 121 + I+ L + G E+ + TNGT Sbjct: 89 IMSFIRGLKRHLDGGALDELTITTNGT 115 >gi|120602623|ref|YP_967023.1| radical SAM domain-containing protein [Desulfovibrio vulgaris DP4] gi|120562852|gb|ABM28596.1| Radical SAM domain protein [Desulfovibrio vulgaris DP4] Length = 543 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 32/111 (28%), Gaps = 23/111 (20%) Query: 31 GCNLWSGRE--------------QDRLSAQCRFC------DTDFVGIQGTKGGRYNVDQL 70 GC G R + +CR+C D G + L Sbjct: 81 GCPFDCGLCPQHNQHTCTAVFEVTTRCNLRCRYCFAAAQDDETQTLQPSAHVGDPPLHTL 140 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 L+E L+GGEP L ++ + + + TNG Sbjct: 141 VALLEAVRQKTGPC--NIQLSGGEPTLRHDLCDIVSHARRLFPFVQLNTNG 189 >gi|15608009|ref|NP_215384.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis H37Rv] gi|15840282|ref|NP_335319.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis CDC1551] gi|31792057|ref|NP_854550.1| molybdenum cofactor biosynthesis protein A [Mycobacterium bovis AF2122/97] gi|121636792|ref|YP_977015.1| molybdenum cofactor biosynthesis protein A [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660646|ref|YP_001282169.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis H37Ra] gi|148822077|ref|YP_001286831.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis F11] gi|215402665|ref|ZP_03414846.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis 02_1987] gi|215410454|ref|ZP_03419262.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis 94_M4241A] gi|215426132|ref|ZP_03424051.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis T92] gi|215429726|ref|ZP_03427645.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis EAS054] gi|215445008|ref|ZP_03431760.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis T85] gi|218752534|ref|ZP_03531330.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis GM 1503] gi|219556731|ref|ZP_03535807.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis T17] gi|224989263|ref|YP_002643950.1| molybdenum cofactor biosynthesis protein A [Mycobacterium bovis BCG str. Tokyo 172] gi|253800109|ref|YP_003033110.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis KZN 1435] gi|254231177|ref|ZP_04924504.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis C] gi|254363801|ref|ZP_04979847.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis str. Haarlem] gi|254549845|ref|ZP_05140292.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185764|ref|ZP_05763238.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis CPHL_A] gi|260199888|ref|ZP_05767379.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis T46] gi|260204066|ref|ZP_05771557.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis K85] gi|289442278|ref|ZP_06432022.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis T46] gi|289446434|ref|ZP_06436178.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis CPHL_A] gi|289555350|ref|ZP_06444560.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis KZN 605] gi|289568832|ref|ZP_06449059.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis T17] gi|289573491|ref|ZP_06453718.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis K85] gi|289744595|ref|ZP_06503973.1| molybdenum cofactor biosynthesis protein A 2 [Mycobacterium tuberculosis 02_1987] gi|289749389|ref|ZP_06508767.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis T92] gi|289752924|ref|ZP_06512302.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis EAS054] gi|289756954|ref|ZP_06516332.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis T85] gi|289761000|ref|ZP_06520378.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis GM 1503] gi|294996349|ref|ZP_06802040.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis 210] gi|297633386|ref|ZP_06951166.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis KZN 4207] gi|297730371|ref|ZP_06959489.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis KZN R506] gi|298524362|ref|ZP_07011771.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis 94_M4241A] gi|306774993|ref|ZP_07413330.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis SUMu001] gi|306782092|ref|ZP_07420429.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis SUMu002] gi|306783537|ref|ZP_07421859.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis SUMu003] gi|306787902|ref|ZP_07426224.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis SUMu004] gi|306792243|ref|ZP_07430545.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis SUMu005] gi|306796641|ref|ZP_07434943.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis SUMu006] gi|306802528|ref|ZP_07439196.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis SUMu008] gi|306806710|ref|ZP_07443378.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis SUMu007] gi|306966906|ref|ZP_07479567.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis SUMu009] gi|306971101|ref|ZP_07483762.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis SUMu010] gi|307078829|ref|ZP_07487999.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis SUMu011] gi|307083389|ref|ZP_07492502.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis SUMu012] gi|313657697|ref|ZP_07814577.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis KZN V2475] gi|54037809|sp|P65385|MOAA2_MYCBO RecName: Full=Molybdenum cofactor biosynthesis protein A 2 gi|54041469|sp|P65384|MOAA2_MYCTU RecName: Full=Molybdenum cofactor biosynthesis protein A 2 gi|2916928|emb|CAA17675.1| PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A2 MOAA2 [Mycobacterium tuberculosis H37Rv] gi|13880443|gb|AAK45133.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis CDC1551] gi|31617644|emb|CAD93754.1| PUTATIVE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A2 MOAA2 [Mycobacterium bovis AF2122/97] gi|121492439|emb|CAL70907.1| Putative molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600236|gb|EAY59246.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis C] gi|134149315|gb|EBA41360.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis str. Haarlem] gi|148504798|gb|ABQ72607.1| molybdenum cofactor biosynthesis protein A2 [Mycobacterium tuberculosis H37Ra] gi|148720604|gb|ABR05229.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis F11] gi|224772376|dbj|BAH25182.1| molybdenum cofactor biosynthesis protein A [Mycobacterium bovis BCG str. Tokyo 172] gi|253321612|gb|ACT26215.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis KZN 1435] gi|289415197|gb|EFD12437.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis T46] gi|289419392|gb|EFD16593.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis CPHL_A] gi|289439982|gb|EFD22475.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis KZN 605] gi|289537922|gb|EFD42500.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis K85] gi|289542586|gb|EFD46234.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis T17] gi|289685123|gb|EFD52611.1| molybdenum cofactor biosynthesis protein A 2 [Mycobacterium tuberculosis 02_1987] gi|289689976|gb|EFD57405.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis T92] gi|289693511|gb|EFD60940.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis EAS054] gi|289708506|gb|EFD72522.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis GM 1503] gi|289712518|gb|EFD76530.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis T85] gi|298494156|gb|EFI29450.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium tuberculosis 94_M4241A] gi|308216488|gb|EFO75887.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis SUMu001] gi|308325208|gb|EFP14059.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis SUMu002] gi|308331698|gb|EFP20549.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis SUMu003] gi|308335463|gb|EFP24314.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis SUMu004] gi|308339261|gb|EFP28112.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis SUMu005] gi|308342938|gb|EFP31789.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis SUMu006] gi|308346823|gb|EFP35674.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis SUMu007] gi|308350740|gb|EFP39591.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis SUMu008] gi|308355401|gb|EFP44252.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis SUMu009] gi|308359353|gb|EFP48204.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis SUMu010] gi|308363260|gb|EFP52111.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis SUMu011] gi|308366917|gb|EFP55768.1| molybdenum cofactor biosynthesis protein A [Mycobacterium tuberculosis SUMu012] gi|323720692|gb|EGB29769.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis CDC1551A] gi|326904911|gb|EGE51844.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis W-148] gi|328459847|gb|AEB05270.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium tuberculosis KZN 4207] Length = 360 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 16/106 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-Q 98 DR + +C +C G++ G + D+LA LI TGGEPLL Sbjct: 47 DRCNLRCSYC-MPERGLRWLPGEQLLRPDELARLI--HIAVTRLGVTSVRFTGGEPLLAH 103 Query: 99 VDVPLIQA---LNKRGFEIAVETNGT-------IEPPQGIDWICVS 134 ++ A L R EI++ TNG G+D + VS Sbjct: 104 HLDEVVAATARLRPRP-EISLTTNGVGLARRAGALAEAGLDRVNVS 148 >gi|317062972|ref|ZP_07927457.1| molybdenum cofactor biosynthesis protein A [Fusobacterium ulcerans ATCC 49185] gi|313688648|gb|EFS25483.1| molybdenum cofactor biosynthesis protein A [Fusobacterium ulcerans ATCC 49185] Length = 327 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 22/167 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D+ + +C +C + K +++ + G K+ + +TGGEPL++ + Sbjct: 21 DKCNLKCIYCMPEESVESIEKDELLTFEEIERICIAAAEIGIKKIK---ITGGEPLIRKE 77 Query: 101 VP-LIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVSPKAGCDLKIKGGQE-- 148 V L++ + +G E + + TNG + GID I +S LK K E Sbjct: 78 VAGLVKKIKLIKGIENVTLTTNGILLEKNIEELAQAGIDGINIS---LDSLKEKKYHEIT 134 Query: 149 ----LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191 LK V + I ++ ++ + E LA Y Sbjct: 135 RCGYLKDVLSGIESVVNKKIKLKLNCVIIKNINEDEIIEIAGLAQKY 181 >gi|306820795|ref|ZP_07454420.1| radical SAM domain protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551185|gb|EFM39151.1| radical SAM domain protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 457 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 33/115 (28%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVD---QLADLIEEQWITGEKEGR 86 CNL +C +C F G + +++ + D + E +G + Sbjct: 105 CNL-----------RCSYC---FASQGDFGGDKEIMSLEVGKKALDYLVEH--SGNRRNL 148 Query: 87 YCVLTGGEPLLQVDVPLIQALNKRG----------FEIAVETNGTIEPPQGIDWI 131 GGEPL+ + +++ L G F + TNG + I++I Sbjct: 149 EVDFFGGEPLM--NFEVVKQLVDYGNKIAGEKNKNFRFTITTNGVLLSDDKIEYI 201 >gi|294815938|ref|ZP_06774581.1| pyrroloquinoline quinone biosynthesis protein PqqE [Streptomyces clavuligerus ATCC 27064] gi|326444277|ref|ZP_08219011.1| pyrroloquinoline quinone biosynthesis protein PqqE [Streptomyces clavuligerus ATCC 27064] gi|294328537|gb|EFG10180.1| pyrroloquinoline quinone biosynthesis protein PqqE [Streptomyces clavuligerus ATCC 27064] Length = 433 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 16/72 (22%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GC L +C +C I + + +D+ + G + L Sbjct: 86 GCPL-----------RCAYCSNPVELIG--RSDELTAEHWSDIFRQAADLGVVQTH---L 129 Query: 91 TGGEPLLQVDVP 102 +GGEPLL+ D+P Sbjct: 130 SGGEPLLRRDLP 141 >gi|262275115|ref|ZP_06052926.1| coenzyme PQQ synthesis protein E [Grimontia hollisae CIP 101886] gi|262221678|gb|EEY72992.1| coenzyme PQQ synthesis protein E [Grimontia hollisae CIP 101886] Length = 376 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 7/89 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R C +C G + ++ ++EE G + + + Sbjct: 12 PLWLLAELTYRCPLHCAYC--ANPLNLGDPDDELSTEEWCRVLEEGRELGAVQLGF---S 66 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETN 119 GGEPL++ D+ L+ N G+ + T+ Sbjct: 67 GGEPLMRRDLEQLVAHANALGYYTNLITS 95 >gi|257468717|ref|ZP_05632811.1| molybdenum cofactor biosynthesis protein A [Fusobacterium ulcerans ATCC 49185] Length = 324 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 22/167 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D+ + +C +C + K +++ + G K+ + +TGGEPL++ + Sbjct: 18 DKCNLKCIYCMPEESVESIEKDELLTFEEIERICIAAAEIGIKKIK---ITGGEPLIRKE 74 Query: 101 VP-LIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVSPKAGCDLKIKGGQE-- 148 V L++ + +G E + + TNG + GID I +S LK K E Sbjct: 75 VAGLVKKIKLIKGIENVTLTTNGILLEKNIEELAQAGIDGINIS---LDSLKEKKYHEIT 131 Query: 149 ----LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191 LK V + I ++ ++ + E LA Y Sbjct: 132 RCGYLKDVLSGIESVVNKKIKLKLNCVIIKNINEDEIIEIAGLAQKY 178 >gi|162146545|ref|YP_001601004.1| putative Fe-S oxidoreductase [Gluconacetobacter diazotrophicus PAl 5] gi|209543456|ref|YP_002275685.1| hopanoid biosynthesis associated radical SAM protein HpnH [Gluconacetobacter diazotrophicus PAl 5] gi|161785120|emb|CAP54665.1| putative Fe-S oxidoreductase [Gluconacetobacter diazotrophicus PAl 5] gi|209531133|gb|ACI51070.1| hopanoid biosynthesis associated radical SAM protein HpnH [Gluconacetobacter diazotrophicus PAl 5] Length = 392 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 8/83 (9%) Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 R +V + D E + GGEPLL ++P +++ L R + + TN + Sbjct: 58 RMSVQECLDADTEAG------APVIAIAGGEPLLHKEMPDIVRGLIARKKYVYLCTN-AL 110 Query: 123 EPPQGIDWICVSPKAGCDLKIKG 145 + +D SP D+ + G Sbjct: 111 LLEKKMDDYEPSPFFSWDVHLDG 133 >gi|77459610|ref|YP_349117.1| molybdenum cofactor biosynthesis protein A [Pseudomonas fluorescens Pf0-1] gi|123744689|sp|Q3KAS8|MOAA_PSEPF RecName: Full=Molybdenum cofactor biosynthesis protein A gi|77383613|gb|ABA75126.1| putative molybdenum cofactor biosynthesis protein A [Pseudomonas fluorescens Pf0-1] Length = 332 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 13/87 (14%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ Q ++++ L + G ++ R LTGGEPL+ Sbjct: 23 DRCDFRCVYCMAEDMQFLPRQ----RVLTLEEIYQLAQSFVALGTRKIR---LTGGEPLI 75 Query: 98 QVDVP-LIQALNKR-GF-EIAVETNGT 121 + V L + + G E+ + TNG+ Sbjct: 76 RPGVVGLCKQIAALPGLRELCLTTNGS 102 >gi|78223860|ref|YP_385607.1| radical SAM family protein [Geobacter metallireducens GS-15] gi|78195115|gb|ABB32882.1| Radical SAM [Geobacter metallireducens GS-15] Length = 383 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 13/98 (13%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL--ADLIEEQWITGEKEGRYCV 89 C +W + C C G+ G D+L + + E Sbjct: 9 CAVWEFTLAC--NLNCIHC--------GSSAGSRRTDELTTDEAVALCHDLKEAGCLGVA 58 Query: 90 LTGGEPLLQVDVPLIQAL-NKRGFEIAVETNGTIEPPQ 126 L GGEPLL+ D I L K G E++V TNGTI P+ Sbjct: 59 LMGGEPLLRKDFWQIAGLIRKLGMELSVITNGTIHDPE 96 >gi|330507417|ref|YP_004383845.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6] gi|328928225|gb|AEB68027.1| radical SAM domain protein [Methanosaeta concilii GP-6] Length = 348 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 42 RLSAQCRFCDT--DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 R C +C D G V +LAD++ E G +TGGEPLL++ Sbjct: 36 RCERGCFYCPISEDRRGKDVAYADEQPVGELADILSEGRAIGALGTG---ITGGEPLLRL 92 Query: 100 DVPL--IQALNKR 110 D L I+AL + Sbjct: 93 DYVLDCIRALKEE 105 >gi|310827022|ref|YP_003959379.1| molybdenum cofactor biosynthesis protein A [Eubacterium limosum KIST612] gi|308738756|gb|ADO36416.1| molybdenum cofactor biosynthesis protein A [Eubacterium limosum KIST612] Length = 318 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 14/104 (13%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY----NVDQLADLIEEQWITGEKEGRYC 88 N D + +C +C + +G R+ + +++ L+ G + R Sbjct: 10 NYLRISITDLCNLRCVYC----MPEEGVPKRRHATNLSFEEIEALVRAGADMGIDKIR-- 63 Query: 89 VLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNGTIEPPQGID 129 LTGGEPL++ + L++ L G A+ TNG + P D Sbjct: 64 -LTGGEPLVRAGVLDLVKKLGAIPGIRDFAMTTNGILLPEMAAD 106 >gi|317152988|ref|YP_004121036.1| Radical SAM domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316943239|gb|ADU62290.1| Radical SAM domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 315 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 9/98 (9%) Query: 33 NLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW + S CR+C + + + ++ +L+ E G +L Sbjct: 11 PLWVQADITTSCSLSCRYC---YASHWKEE-RHIDTERFLELLAEMDEMGVF---LLLLA 63 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGI 128 GGEPL D +++A + ++V TNGT P + Sbjct: 64 GGEPLRHPDFFRILEAAIQTRMSVSVLTNGTESPELAV 101 >gi|239584285|gb|ACR82899.1| AmgF [Streptomyces sp. KCTC 9047] Length = 310 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 43/126 (34%), Gaps = 13/126 (10%) Query: 84 EGRYCVLTGGEPLLQ-VDVPLIQALNKRGF--EIAVETNGTIEPP------QGIDWICVS 134 R+ + GGEPLL VP++ + + G + V TNG + P +D + VS Sbjct: 60 RARFVKVLGGEPLLHKQLVPILDIIRESGIAPRVLVCTNGVLLPRMRDDFWSRVDEVEVS 119 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD-GPFLEENTNLAISYCF 193 G +L EL V Q + F + G + C Sbjct: 120 IYPGREL---SDDELAHVRRQAERHQTTLTVSYYSHFRYSYSEVGTEDARLVEQIFTTCQ 176 Query: 194 QNPKWR 199 WR Sbjct: 177 VAHVWR 182 >gi|262201214|ref|YP_003272422.1| molybdenum cofactor biosynthesis protein A [Gordonia bronchialis DSM 43247] gi|262084561|gb|ACY20529.1| molybdenum cofactor biosynthesis protein A [Gordonia bronchialis DSM 43247] Length = 365 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 22/109 (20%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA--DLIEEQWITGEKE--GRYCVLTGGEPL 96 DR + +C +C + + +L D + ++ TGGEPL Sbjct: 48 DRCNLRCTYC------MPAEGLDWMDSAELLSTDELVRVLTVAVRDLGVHRIRFTGGEPL 101 Query: 97 LQVDVPLI----QALNKRGFEIAVETNG---TIE----PPQGIDWICVS 134 L+ D+ I AL +R E+A+ TNG T G+D I VS Sbjct: 102 LRRDLEEIIARMAALPQRP-ELAMTTNGLGLTRRARGLVDAGLDRINVS 149 >gi|159041556|ref|YP_001540808.1| radical SAM domain-containing protein [Caldivirga maquilingensis IC-167] gi|157920391|gb|ABW01818.1| Radical SAM domain protein [Caldivirga maquilingensis IC-167] Length = 371 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 18/81 (22%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 VF F+GCN +C +C + + G +LA + Q E Sbjct: 153 TVF--FTGCNF-----------RCVYCQNWDISQRPENGVEVTPGELAAI---QAKLRED 196 Query: 84 EGRYCVLTGGEPLLQVDVPLI 104 R GGEP +P I Sbjct: 197 GARNINWVGGEPT--PSIPFI 215 >gi|147921657|ref|YP_684524.1| hypothetical protein LRC197 [uncultured methanogenic archaeon RC-I] gi|110619920|emb|CAJ35198.1| conserved hypothetical protein [uncultured methanogenic archaeon RC-I] Length = 372 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%) Query: 80 TGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTI 122 + R + GGEPLL+ + L+ L R F + TNGT+ Sbjct: 54 IAQDPDRTVIFYGGEPLLELPKMLELMDELPARRFLLH--TNGTM 96 >gi|325262367|ref|ZP_08129104.1| putative pyruvate formate-lyase 1 activating enzyme [Clostridium sp. D5] gi|324032199|gb|EGB93477.1| putative pyruvate formate-lyase 1 activating enzyme [Clostridium sp. D5] Length = 314 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119 G Y VD+L I + E G +GGE L+Q + + + +A+ET Sbjct: 106 GQDYTVDELFRRIYQDRFYFEHSGGGVTFSGGETLMQPRFLHAIAKKCREYHINVAIETC 165 Query: 120 G 120 G Sbjct: 166 G 166 >gi|323699436|ref|ZP_08111348.1| Radical SAM domain protein [Desulfovibrio sp. ND132] gi|323459368|gb|EGB15233.1| Radical SAM domain protein [Desulfovibrio desulfuricans ND132] Length = 370 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 7/88 (7%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN + + +C +C + T + L + ++ G LT Sbjct: 5 CNTLIWNMTRKCNFRCEYC---YFPHDNTP----VTETLDARRIKAFLDGTGRTWKVGLT 57 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETN 119 GGEP + + I A I ++TN Sbjct: 58 GGEPFIYPGINDICATLTETHVIGIDTN 85 >gi|313890891|ref|ZP_07824515.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pseudoporcinus SPIN 20026] gi|313120789|gb|EFR43904.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus pseudoporcinus SPIN 20026] Length = 263 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 66/183 (36%), Gaps = 46/183 (25%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +C++C DT + Sbjct: 16 TESFGSVDGPG---------IRFIIFMQGC-----------KMRCQYCHNPDTWEMETNN 55 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQAL----NKRGFE 113 +K + D+++E G+ ++GGE +LQ+D I AL K G Sbjct: 56 SKER-----TVNDVLKEALNYKHFWGKTGGITVSGGEAMLQID--FITALFIQAKKHGVH 108 Query: 114 IAVETNG-TIEPPQGI-----DWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD 167 ++T G T + V+ D+K ++ K+V Q N + + + Sbjct: 109 TTLDTCGFTYRATPEYHAKLEKLLAVTDLVLLDIKEIDAEQHKIVTKQSNKNILLFAQYL 168 Query: 168 FER 170 ++ Sbjct: 169 SDK 171 >gi|308187773|ref|YP_003931904.1| UPF0063 protein yfgB [Pantoea vagans C9-1] gi|308058283|gb|ADO10455.1| UPF0063 protein yfgB [Pantoea vagans C9-1] Length = 389 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ ITG++ V+ G Sbjct: 123 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKITGQRPITNVVMMG 182 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL ++ VP ++ L+ GF + + T+G + + D I V Sbjct: 183 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 233 >gi|304438304|ref|ZP_07398245.1| pyruvate formate-lyase activating enzyme [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368670|gb|EFM22354.1| pyruvate formate-lyase activating enzyme [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 175 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 28/87 (32%) Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLA 71 GEG R+ VF GC +C C DT Q T GGR + Sbjct: 24 GEGI---RLTVF--TQGCP-----------RRCPGCHNPDT-----QPTDGGRVT--TVG 60 Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQ 98 ++++ G L+GGEP LQ Sbjct: 61 AVLQDLDANPLLTG--LTLSGGEPFLQ 85 >gi|304398588|ref|ZP_07380460.1| radical SAM enzyme, Cfr family [Pantoea sp. aB] gi|304353799|gb|EFM18174.1| radical SAM enzyme, Cfr family [Pantoea sp. aB] Length = 389 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ ITG++ V+ G Sbjct: 123 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKITGQRPITNVVMMG 182 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL ++ VP ++ L+ GF + + T+G + + D I V Sbjct: 183 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 233 >gi|315656996|ref|ZP_07909881.1| molybdopterin cofactor biosynthesis protein A [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492388|gb|EFU81994.1| molybdopterin cofactor biosynthesis protein A [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 362 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 63/185 (34%), Gaps = 39/185 (21%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY----CVLTGGEPL 96 DR +C +C + +L D E + G R LTGGEPL Sbjct: 42 DRCDLRCSYC------LPRGGVKWVPRRELLDASEILRLAGIAIHRLGITQVRLTGGEPL 95 Query: 97 LQVDVPLIQALNKRGF-------EIAVETN--------------GTIEPPQGIDWICVSP 135 L+ D+ I A + F ++A+ TN G +D + P Sbjct: 96 LRPDLLEIAAGVRESFVSAGLDPQLALTTNARSLAPLAAALRATGIRRINISLD--TLDP 153 Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 + G EL ++ + GF + + +D L E L + +C + Sbjct: 154 NRFAQIA--GRDELAKALAGIDAA--LSAGFQTVKMNTVMLDRVSLREAPEL-LRFCLER 208 Query: 196 P-KWR 199 +WR Sbjct: 209 GIEWR 213 >gi|311277353|ref|YP_003939584.1| Radical SAM domain-containing protein [Enterobacter cloacae SCF1] gi|308746548|gb|ADO46300.1| Radical SAM domain protein [Enterobacter cloacae SCF1] Length = 374 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 13/99 (13%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 +GC++ + R + +CR+C + + + L I +Q E Sbjct: 2 TGCHVMAKPAGSRCNLRCRYC----FYLDKPQYAMMDDATLTLFIRQQIAAQPGEDVQFA 57 Query: 90 LTGGEPLL------QVDVPLIQALNKRGFEIA--VETNG 120 GGEP L V L Q G I ++TNG Sbjct: 58 WQGGEPTLCGLDFFHRVVEL-QQQYGHGKRIHNALQTNG 95 >gi|294495004|ref|YP_003541497.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanohalophilus mahii DSM 5219] gi|292666003|gb|ADE35852.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanohalophilus mahii DSM 5219] Length = 272 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 9/79 (11%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103 +C +C ++ + G Q+ L+E T V++GGEPL Q + Sbjct: 41 RCPYC-QNYSILNG--YELVESSQIRQLME----TSRPFVSSVVISGGEPLQQEKAVSGI 93 Query: 104 IQALNKRGFEIAVETNGTI 122 Q G + + TNG Sbjct: 94 AQMARDMGLLVGIHTNGVH 112 >gi|261345336|ref|ZP_05972980.1| radical SAM enzyme, Cfr family [Providencia rustigianii DSM 4541] gi|282566377|gb|EFB71912.1| radical SAM enzyme, Cfr family [Providencia rustigianii DSM 4541] Length = 393 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I TG + V+ G Sbjct: 127 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGRRPITNVVMMG 186 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL ++ VP ++ L+ GF + + T+G + + D I V Sbjct: 187 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDV 237 >gi|229817484|ref|ZP_04447766.1| hypothetical protein BIFANG_02747 [Bifidobacterium angulatum DSM 20098] gi|229785273|gb|EEP21387.1| hypothetical protein BIFANG_02747 [Bifidobacterium angulatum DSM 20098] Length = 280 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 26/106 (24%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78 R+ VF SGC L +C++C DT + G ++ + I+ Sbjct: 58 RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLEAMIKKIDRYA 100 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG 120 + G +GGE ++Q + + + G ++T+G Sbjct: 101 DLFKATGGGITFSGGESMMQP--AFVSRVFHAAKQMGVHTCLDTSG 144 >gi|196230119|ref|ZP_03128982.1| coenzyme PQQ biosynthesis protein E [Chthoniobacter flavus Ellin428] gi|196225716|gb|EDY20223.1| coenzyme PQQ biosynthesis protein E [Chthoniobacter flavus Ellin428] Length = 334 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 7/79 (8%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R C +C ++ G G + +I+E G + + +GGEPLL+ D+ Sbjct: 15 RCPLHCPYC-SNPAMYPG--GNELTTSEWQRVIDEAAALGVLQAGF---SGGEPLLRPDL 68 Query: 102 P-LIQALNKRGFEIAVETN 119 LI + G + T+ Sbjct: 69 AQLIAHARQAGLYTNLITS 87 >gi|15679080|ref|NP_276197.1| pyruvate formate lyase activating protein [Methanothermobacter thermautotrophicus str. Delta H] gi|2622167|gb|AAB85558.1| pyruvate formate lyase activating protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 332 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 16/73 (21%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F FSGC + +C FC + + G VD+LA LIEE+ G Sbjct: 122 TIF--FSGC-----------TLRCVFCQNWDISQNPSAGRHIEVDELAALIEERRRMGAA 168 Query: 84 EGRYCVLTGGEPL 96 + GG+P Sbjct: 169 NVNFV---GGDPT 178 >gi|150388865|ref|YP_001318914.1| radical SAM domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149948727|gb|ABR47255.1| Radical SAM domain protein [Alkaliphilus metalliredigens QYMF] Length = 513 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 18/91 (19%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCN+ +C+ C + + G N D+ L +E G ++ L Sbjct: 15 GCNM-----------RCKHCGS---SCEHPLEGELNTDEALKLCDEMGELG---FQWITL 57 Query: 91 TGGEPLLQVDVPLI-QALNKRGFEIAVETNG 120 +GGEP + D LI + LN G + TNG Sbjct: 58 SGGEPTTRKDWHLIAKRLNDNGIIPNMITNG 88 >gi|223986899|ref|ZP_03636876.1| hypothetical protein HOLDEFILI_04199 [Holdemania filiformis DSM 12042] gi|223961155|gb|EEF65690.1| hypothetical protein HOLDEFILI_04199 [Holdemania filiformis DSM 12042] Length = 168 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 25/108 (23%) Query: 10 FLTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68 F ++ GE G AV GC C C G + Sbjct: 12 FDSIVDGE----GLRAV-VWTQGCP-----------HGCPGCHNPQT-HAFDGGTSVASE 54 Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEI 114 + + ++ + +GGEP+ Q L A+++ G + Sbjct: 55 SILEQLKAHFYLDG-----VTFSGGEPMAQAAACGELAWAVHQLGMNV 97 >gi|182412196|ref|YP_001817262.1| radical SAM protein [Opitutus terrae PB90-1] gi|205829633|sp|B1ZQZ5|RLMN1_OPITP RecName: Full=Ribosomal RNA large subunit methyltransferase N 1; AltName: Full=23S rRNA m2A2503 methyltransferase 1 gi|177839410|gb|ACB73662.1| radical SAM enzyme, Cfr family [Opitutus terrae PB90-1] Length = 355 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 62/179 (34%), Gaps = 30/179 (16%) Query: 28 RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 R +GC Q + C FC T G + V+Q L E G K + Sbjct: 102 RAAGC----LSSQVGCAMGCDFCATAQSGFERNLTAGEMVEQFLALRREAASAGRK-LQT 156 Query: 88 CVLTG-GEPLLQVDVPL--IQALNKRGF------EIAVETNGTIEPPQGIDWICVSPKAG 138 V G GEPLL +D L ++ + + ++ V T G + GID + Sbjct: 157 VVFMGMGEPLLNLDAVLTAVRRIADNTYGGLGWRQVTVSTVGLVP---GIDALT-----A 208 Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS----LQPMDGPFLEENTNLAISYCF 193 DL I L + + + + RF+ L +D + I YC Sbjct: 209 ADLGIN----LAVSLHAPDDATRAALLPAGRRFAIADILAAVDRFQASRGRPVIIQYCL 263 >gi|168179650|ref|ZP_02614314.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum NCTC 2916] gi|168184928|ref|ZP_02619592.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum Bf] gi|237795372|ref|YP_002862924.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum Ba4 str. 657] gi|259495862|sp|C3KXJ8|MOAA_CLOB6 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|182669280|gb|EDT81256.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum NCTC 2916] gi|182672020|gb|EDT83981.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum Bf] gi|229263442|gb|ACQ54475.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum Ba4 str. 657] Length = 319 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +C +C I+ +++ +++ + G + R+ TG Sbjct: 10 NYLRVSVTDRCNLRCVYCMPPEGIIKKEHDNIMRYEEIFKVVKSASLLGVNKIRF---TG 66 Query: 93 GEPLLQVDV 101 GEPL+ ++ Sbjct: 67 GEPLILKNI 75 >gi|220926899|ref|YP_002502201.1| hopanoid biosynthesis associated radical SAM protein HpnH [Methylobacterium nodulans ORS 2060] gi|219951506|gb|ACL61898.1| hopanoid biosynthesis associated radical SAM protein HpnH [Methylobacterium nodulans ORS 2060] Length = 384 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 20/119 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C R VD+ + + E V+ Sbjct: 38 CNLAC--------AGCG----KIDYPDEILNKRLPVDEALESVRECG------APVVVIA 79 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEPLL D+P +++ + + V TN + + I SP + + G +E+ Sbjct: 80 GGEPLLHKDLPQIVEGIIAQKKFAIVCTN-ALLLEKKISQYKPSPYFTWSIHLDGDKEM 137 >gi|154244917|ref|YP_001415875.1| radical SAM domain-containing protein [Xanthobacter autotrophicus Py2] gi|154159002|gb|ABS66218.1| Radical SAM domain protein [Xanthobacter autotrophicus Py2] Length = 355 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 30/130 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + + + ++++ + CVL Sbjct: 42 CNLL-----------CTTC--PRTYEELEPPADMSWELFTSIVDQI-----PDLERCVLH 83 Query: 92 G-GEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 G GEP+L ++ +++ L RG + TNGT+ ++ K G + G EL Sbjct: 84 GIGEPMLVPNLDRMVRYLKDRGTYVLFNTNGTV----------LNEKNGRAMIEAGLDEL 133 Query: 150 KLVFPQVNVS 159 ++ N + Sbjct: 134 RVSLDASNAA 143 >gi|331004874|ref|ZP_08328291.1| Molybdenum cofactor biosynthesis protein A [gamma proteobacterium IMCC1989] gi|330421328|gb|EGG95577.1| Molybdenum cofactor biosynthesis protein A [gamma proteobacterium IMCC1989] Length = 327 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 25/109 (22%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77 GR + R S DR +C +C D F+ + ++++LA + ++ Sbjct: 8 GRPITYLRLS--------VTDRCDFRCVYCMAEDMQFL----PRKDILSLEELAIIAQQF 55 Query: 78 WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE-----TNGT 121 G R +TGGEPL++ + Q + G +E TNG+ Sbjct: 56 VELGITAIR---ITGGEPLIRRGID--QLFSTLGQLPELEELTLTTNGS 99 >gi|323507587|emb|CBQ67458.1| related to Molybdopterin biosynthesis CNX2 protein [Sporisorium reilianum] Length = 874 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 33/101 (32%) Query: 32 CNLWSGREQDRLSAQCRFC---D----TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 CNL +C +C D T + T V++LA L Q + + Sbjct: 112 CNL-----------RCLYCMPEDGVPLTPSANLLSTS----EVERLAALFVSQGVNKIR- 155 Query: 85 GRYCVLTGGEPLLQVDVPLIQA----LNKRGFE-IAVETNG 120 LTGGEP ++ D+P I A L + G E I + TNG Sbjct: 156 -----LTGGEPTVRSDLPQIVASLNSLKQHGLEQIGITTNG 191 >gi|320449552|ref|YP_004201648.1| molybdenum cofactor biosynthesis protein A [Thermus scotoductus SA-01] gi|320149721|gb|ADW21099.1| molybdenum cofactor biosynthesis protein A [Thermus scotoductus SA-01] Length = 325 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 18/103 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C G V+++ +E + G R+ T Sbjct: 22 CNL-----------HCLYC-HPLGLEMAEPPGTLTVEEVDYFLEAASLLGLSAVRF---T 66 Query: 92 GGEPLLQVDVPLI--QALNKRGFE-IAVETNGTIEPPQGIDWI 131 GGEPL++ ++P + +A +K G E +A+ TNG + + + + Sbjct: 67 GGEPLVRKELPQMIERARSKEGIEDVAITTNGLLFAKRAKELV 109 >gi|288799992|ref|ZP_06405451.1| probable arylsulfatase-activating protein AslB [Prevotella sp. oral taxon 299 str. F0039] gi|288333240|gb|EFC71719.1| probable arylsulfatase-activating protein AslB [Prevotella sp. oral taxon 299 str. F0039] Length = 409 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 26/103 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQ---GTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL C++C ++ Q + + + L + +Q++ + + + Sbjct: 22 CNL-----------SCKYC--YYLEKQFLYASNKSMWMDETLLERFIQQYLLSQTQPQ-V 67 Query: 89 VLT--GGEPLLQVDVPLIQALN-----KRGFEIA--VETNGTI 122 T GGEPLL+ +AL +G++I ++TNGT+ Sbjct: 68 SFTWHGGEPLLRPISFYEKALKLQQKYGKGYDIQNSLQTNGTL 110 >gi|229059842|ref|ZP_04197218.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH603] gi|228719512|gb|EEL71114.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH603] Length = 306 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 8/71 (11%) Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-R 110 D+ +Q D++ L G + R LTGGEPLL+ D+P LI L K Sbjct: 9 DYAFLQEEF--LLTFDEIERLARLFISMGVNKIR---LTGGEPLLRKDLPKLIARLAKLE 63 Query: 111 GFE-IAVETNG 120 G I + TNG Sbjct: 64 GLTDIGLTTNG 74 >gi|94969793|ref|YP_591841.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis Ellin345] gi|94551843|gb|ABF41767.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis Ellin345] Length = 340 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 20/90 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C++C ++ + I+ G ++ Sbjct: 46 CNL-----------SCKYC-----NEYDKVSKPVPLETIKRRIDLLAKLGTN---IVTIS 86 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 GGEPLL D+ +I+ + K + TNG Sbjct: 87 GGEPLLHPDLDEIIRHMRKHPIIAGMITNG 116 >gi|61888840|ref|NP_001013615.1| molybdenum cofactor biosynthesis protein 1 isoform b [Bos taurus] gi|61553596|gb|AAX46428.1| molybdenum cofactor synthesis-step 1 protein isoform 1 [Bos taurus] Length = 382 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + K +++ L G + R LT Sbjct: 77 CNL-----------RCQYCMPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 122 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GGEPL++ D V ++ L + G I + TNG Sbjct: 123 GGEPLIRPDVVDIVAQLRQLEGLRTIGITTNG 154 >gi|116751423|ref|YP_848110.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116700487|gb|ABK19675.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB] Length = 362 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 14/89 (15%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL G T G ++ DL+ + E Y +L+ Sbjct: 39 CNLNCIHCYLG----------PHDGDHETLGPEAGAARIRDLLRQ---AAEAGCLYVLLS 85 Query: 92 GGEPLLQVDVPLI-QALNKRGFEIAVETN 119 GGEPLL+ D I + G + V TN Sbjct: 86 GGEPLLRPDFESIYRYARSLGLIVTVFTN 114 >gi|317486219|ref|ZP_07945053.1| molybdenum cofactor biosynthesis protein A [Bilophila wadsworthia 3_1_6] gi|316922518|gb|EFV43770.1| molybdenum cofactor biosynthesis protein A [Bilophila wadsworthia 3_1_6] Length = 347 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 25/104 (24%) Query: 27 CRFS---GCNLWSGREQDRLSAQCRFCDT-DFVGIQGTKGGRYN-VDQLADLIEEQWITG 81 R S CNL +C +C + I RY ++QL D+ + + Sbjct: 28 IRLSVTDRCNL-----------RCTYCRSGMETFIPHESVLRYEEMEQLVDMAMDMGVEK 76 Query: 82 EKEGRYCVLTGGEPLLQVDVP-LIQALNKRG--FEIAVETNGTI 122 LTGGEP + ++ L +I V TNGT+ Sbjct: 77 ------VRLTGGEPFARKGFADFLERLRAAHPALDIRVTTNGTL 114 >gi|302518288|ref|ZP_07270630.1| molybdenum cofactor biosynthesis protein A [Streptomyces sp. SPB78] gi|318057729|ref|ZP_07976452.1| molybdenum cofactor biosynthesis protein A [Streptomyces sp. SA3_actG] gi|318078320|ref|ZP_07985652.1| molybdenum cofactor biosynthesis protein A [Streptomyces sp. SA3_actF] gi|302427183|gb|EFK98998.1| molybdenum cofactor biosynthesis protein A [Streptomyces sp. SPB78] Length = 329 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 12/104 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99 DR + +C +C + K +++ L+ TGGEPLL+ Sbjct: 19 DRCNLRCTYCMPEEGLQWLGKPELLTDEEIVRLVR--LAVTRLGITDVRFTGGEPLLRRG 76 Query: 100 DVPLIQ--ALNKRGFEIAVETNG-------TIEPPQGIDWICVS 134 V L++ AL ++++ TNG T G+D + VS Sbjct: 77 LVDLVRRCALLDPRPKLSLTTNGIGLARTATALAEAGLDRVNVS 120 >gi|302530570|ref|ZP_07282912.1| molybdenum cofactor biosynthesis protein A [Streptomyces sp. AA4] gi|302439465|gb|EFL11281.1| molybdenum cofactor biosynthesis protein A [Streptomyces sp. AA4] Length = 354 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 22/109 (20%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRY-CVLTGGEPL 96 DR + +C +C + +Q+ +L+ I E G LTGGEPL Sbjct: 45 DRCNLRCTYC------MPAEGLDWMPSEQVLSDDELVRLMRIAVEMLGVTDIRLTGGEPL 98 Query: 97 LQVDVPL----IQALNKRGFEIAVETNG---TIEPP----QGIDWICVS 134 L+ + I AL R +++ TNG P G+D I VS Sbjct: 99 LRPGLEHIVERITALEPRP-RVSMTTNGIGLAKRAPGLVAAGLDRINVS 146 >gi|269928766|ref|YP_003321087.1| Radical SAM domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269788123|gb|ACZ40265.1| Radical SAM domain protein [Sphaerobacter thermophilus DSM 20745] Length = 364 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 18/101 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + ++ LI+E E + Y + Sbjct: 24 CNLQCVHCLSSSGRR--------------APDELTTEEAKRLIDEW---AEMKVFYINVG 66 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GGEP+ + D L++ R + TNGT+ DWI Sbjct: 67 GGEPMTRPDFFELMEYAISRRIGVKFSTNGTLIDDAAADWI 107 >gi|126726927|ref|ZP_01742766.1| radical SAM domain protein [Rhodobacterales bacterium HTCC2150] gi|126703885|gb|EBA02979.1| radical SAM domain protein [Rhodobacterales bacterium HTCC2150] Length = 329 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119 D+++D + + R TGGEP + + + + + G+E+ + TN Sbjct: 78 TADEVSDYLTQLKDQNW-GVREIAFTGGEPFMNPEMIEITRRSLAAGYEVLILTN 131 >gi|88811940|ref|ZP_01127193.1| coproporphyrinogen III oxidase [Nitrococcus mobilis Nb-231] gi|88790824|gb|EAR21938.1| coproporphyrinogen III oxidase [Nitrococcus mobilis Nb-231] Length = 369 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 10/87 (11%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 C +CD + ++G VD LAD++ E E+E GG P L L + Sbjct: 4 CPYCDFNSHALRGELPATAYVDALLADVLREIKHIHEREISSVFFGGGTPSLFPPAALAR 63 Query: 106 ALN--------KRGFEIAVETN-GTIE 123 L EI +E N G+++ Sbjct: 64 LLEGLQRYLRIAADCEITLEANPGSVD 90 >gi|330685605|gb|EGG97251.1| YfkB-like domain protein [Staphylococcus epidermidis VCU121] Length = 380 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 12/91 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D + ++E R +TGGEP+ Sbjct: 44 RCSHCAVGYT-LQTKDPEPLPMDIIYRRLDEI-----PNLRTLSITGGEPMFSKKSIKNV 97 Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130 PL++ ++RG + + +N T+ + +D Sbjct: 98 VKPLLKYAHQRGIYVQMNSNLTLPQDRYLDI 128 >gi|269797703|ref|YP_003311603.1| radical SAM protein [Veillonella parvula DSM 2008] gi|282848976|ref|ZP_06258365.1| radical SAM domain protein [Veillonella parvula ATCC 17745] gi|269094332|gb|ACZ24323.1| Radical SAM domain protein [Veillonella parvula DSM 2008] gi|282581251|gb|EFB86645.1| radical SAM domain protein [Veillonella parvula ATCC 17745] Length = 469 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 26/112 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ--LADLIEEQWITGEKEGRYCV 89 CNL C++C F G + + +A + I ++C Sbjct: 107 CNL-----------ACKYC---FASQGDYGGVKRELMSFDVAKRAVDFLIKMSGPRQHCE 152 Query: 90 LT--GGEPLLQVD--------VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 + GGEPLL D + IQ + + F++ + TNG + ID++ Sbjct: 153 IDFFGGEPLLNWDVVKQTVEYIESIQEKHNKIFKLTLTTNGMLLTQDKIDYV 204 >gi|206890569|ref|YP_002248014.1| coenzyme PQQ synthesis protein, putative [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742507|gb|ACI21564.1| coenzyme PQQ synthesis protein, putative [Thermodesulfovibrio yellowstonii DSM 11347] Length = 302 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 12/116 (10%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R + C FC QG + +++ I I E + + GGEP L + Sbjct: 12 RCNKSCAFC-----FSQGLFYHDFPEERIGRFIA---ILRENKINSLDILGGEPFLYKSL 63 Query: 102 -PLIQALNKRGFEIAVETNGTIEPPQGIDWICV---SPKAGCDLKIKGGQELKLVF 153 L++ ++ E+ + TNGT S K G + ++L + Sbjct: 64 NKLVKKAIEKDIEVTISTNGTFINELKNFLKTFDKGSVKVGVSINESPAEDLLQII 119 >gi|206901313|ref|YP_002251416.1| heme biosynthesis protein, putative [Dictyoglomus thermophilum H-6-12] gi|206740416|gb|ACI19474.1| heme biosynthesis protein, putative [Dictyoglomus thermophilum H-6-12] Length = 326 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 21/103 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG---RYC 88 CNL +CR C + ++L +IE+ +KEG Sbjct: 15 CNL-----------RCRHC----YQENFDRSRELPFEKLVHIIEDIATFLKKEGFDRLSV 59 Query: 89 VLTGGEPLLQVDV-PLIQALNKRG--FEIAVETNGTIEPPQGI 128 LTGGEPL+ + +++ LNK EI + TNG + P + I Sbjct: 60 NLTGGEPLIYPHLNQILKTLNKVDIVHEINIITNGILSPNKVI 102 >gi|158455134|gb|AAI26848.1| Molybdenum cofactor synthesis 1 [Bos taurus] gi|296474490|gb|DAA16605.1| molybdenum cofactor biosynthesis protein 1 isoform b [Bos taurus] Length = 382 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + K +++ L G + R LT Sbjct: 77 CNL-----------RCQYCMPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 122 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GGEPL++ D V ++ L + G I + TNG Sbjct: 123 GGEPLIRPDVVDIVAQLRQLEGLRTIGITTNG 154 >gi|39936796|ref|NP_949072.1| radical SAM family protein [Rhodopseudomonas palustris CGA009] gi|192292622|ref|YP_001993227.1| hopanoid biosynthesis associated radical SAM protein HpnH [Rhodopseudomonas palustris TIE-1] gi|39650653|emb|CAE29176.1| conserved unknown protein [Rhodopseudomonas palustris CGA009] gi|192286371|gb|ACF02752.1| hopanoid biosynthesis associated radical SAM protein HpnH [Rhodopseudomonas palustris TIE-1] Length = 386 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C R + D EE + Sbjct: 38 CNLAC--------AGCG----KIDYPDAILNRRMTAQECWDAAEECG------APMVAIP 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ ++ +++ L R +++ TN + + + SP + + G +E Sbjct: 80 GGEPLIHKEIGEIVRGLVARKKFVSLCTN-ALLLEKKLHLFEPSPYLFFSVHLDGLKE 136 >gi|212638175|ref|YP_002314695.1| Radical SAM superfamily enzyme [Anoxybacillus flavithermus WK1] gi|212559655|gb|ACJ32710.1| Radical SAM superfamily enzyme [Anoxybacillus flavithermus WK1] Length = 376 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 6/48 (12%) Query: 83 KEGRYCVLTGGEPLL------QVDVPLIQALNKRGFEIAVETNGTIEP 124 R +TGGEP+L Q VPL++ ++RG + +N T++ Sbjct: 77 PHLRSLSITGGEPMLSMKSVEQYVVPLLKYAHERGVRTQINSNLTLDL 124 >gi|294793467|ref|ZP_06758604.1| radical SAM domain protein [Veillonella sp. 3_1_44] gi|294455037|gb|EFG23409.1| radical SAM domain protein [Veillonella sp. 3_1_44] Length = 463 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 26/112 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ--LADLIEEQWITGEKEGRYCV 89 CNL C++C F G + + +A + I ++C Sbjct: 101 CNL-----------ACKYC---FASQGDYGGVKRELMSFDVAKRAVDFLIKMSGPRQHCE 146 Query: 90 LT--GGEPLLQVD--------VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 + GGEPLL D + IQ + + F++ + TNG + ID++ Sbjct: 147 IDFFGGEPLLNWDVVKQTVEYIESIQEKHNKIFKLTLTTNGMLLTQDKIDYV 198 >gi|11499842|ref|NP_071086.1| tRNA-modifying enzyme [Archaeoglobus fulgidus DSM 4304] gi|2648255|gb|AAB88988.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 298 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Query: 93 GEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 GEP L +P LI+ KRGF + TNGT Sbjct: 127 GEPTLYPMLPELIEEYKKRGFTTFLVTNGTNP 158 >gi|15807624|ref|NP_293989.1| molybdenum cofactor biosynthesis protein A [Deinococcus radiodurans R1] Length = 247 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 25/112 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + + + + +++ L G ++ R +TG Sbjct: 19 DRCNLRCTYCMPAEVFGPD--YAFL--PRAELLSFEEIERLARVFVGLGAEKLR---ITG 71 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVS 134 GEP L+ D+P L+ L G + +A+ TNG + P D + +S Sbjct: 72 GEPTLRRDLPELLARLAAFPGVQDLAMTTNGLLLPRLAADLKAAGLQRVTIS 123 >gi|134300005|ref|YP_001113501.1| radical SAM domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052705|gb|ABO50676.1| Radical SAM domain protein [Desulfotomaculum reducens MI-1] Length = 330 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 24/99 (24%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ---LADLIEEQWITGEKEGRYC 88 CNL+ C + D G++ + D+ L D I E + Sbjct: 11 CNLYC--------EHC-YRD---AGVKAE--EELSTDEGKRLLDQIAEVG------FKIM 50 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 + +GGEPL++ D+ L+ +G TNGT+ P+ Sbjct: 51 IFSGGEPLMRPDIYELVAHARSKGLRPVFGTNGTLITPE 89 >gi|115523832|ref|YP_780743.1| radical SAM domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115517779|gb|ABJ05763.1| Radical SAM domain protein [Rhodopseudomonas palustris BisA53] Length = 382 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 22/119 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R + D EE + Sbjct: 38 CNL-----------ACVGCGKIDY--PDAILDRRMTAQECWDAAEECG------APMVAI 78 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ ++ +++ L +R +++ TN + + + SP + + G +E Sbjct: 79 PGGEPLIHREIGEIVRGLVERKKFVSLCTN-ALLLEKKLHLFEPSPYLFFSVHLDGLKE 136 >gi|268325092|emb|CBH38680.1| conserved hypothetical protein, wyosine base formation and radical SAM family [uncultured archaeon] Length = 319 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%) Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP 124 GEP L + LIQ + G V TNGT Sbjct: 138 GEPTLYPHLQELIQEFHSHGMTTFVVTNGTNPA 170 >gi|302558328|ref|ZP_07310670.1| molybdenum cofactor biosynthesis protein A [Streptomyces griseoflavus Tu4000] gi|302475946|gb|EFL39039.1| molybdenum cofactor biosynthesis protein A [Streptomyces griseoflavus Tu4000] Length = 342 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 17/91 (18%) Query: 45 AQCRFC----D-----TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 C FC D T + G ++ + G K TGGEP Sbjct: 39 EACWFCHNEGDVPPPHTQLHRKDRPRPGELTAADYLTVLRDVITAGLKR---VYFTGGEP 95 Query: 96 LLQVD-VPLIQALNKRGF---EIAVETNGTI 122 LL P++ L G + TNG++ Sbjct: 96 LLSPLARPVLTELPDAGADGSYTLI-TNGSL 125 >gi|56419305|ref|YP_146623.1| molybdopterin cofactor biosynthesis protein [Geobacillus kaustophilus HTA426] gi|56379147|dbj|BAD75055.1| molybdopterin cofactor biosynthesis protein [Geobacillus kaustophilus HTA426] Length = 341 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 13/102 (12%) Query: 28 RFSGCNLWSGREQ--DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 R + L R D+ + +C +C + G DQL +EE + E Sbjct: 12 RLAR-PLRDLRLSVIDQCNFRCVYC--MPAEVFGPNFRFLAEDQLL-TVEEMALLAECFV 67 Query: 86 RYCV----LTGGEPLLQVDV-PLIQALNK-RGFE-IAVETNG 120 V LTGGEPLL+ D+ LI+ L+ G +A+ TNG Sbjct: 68 ELGVEKIRLTGGEPLLRRDLDALIERLSMIPGLRDVALTTNG 109 >gi|302872841|ref|YP_003841477.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47] gi|302575700|gb|ADL43491.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47] Length = 194 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 28/97 (28%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + TL G G G GC S +C+ C + + K Sbjct: 11 YPV----YTL-GPGKRVGIW-----LQGC-----------SIRCKGCMSVHTW-EFDKSK 48 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 ++++AD+++ + ++GGEP Q + Sbjct: 49 AIKIEEVADILKSFG------CKRLTISGGEPFDQNE 79 >gi|292493485|ref|YP_003528924.1| coenzyme PQQ biosynthesis protein E [Nitrosococcus halophilus Nc4] gi|291582080|gb|ADE16537.1| coenzyme PQQ biosynthesis protein E [Nitrosococcus halophilus Nc4] Length = 383 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 9/94 (9%) Query: 28 RFSGCNLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R LW E QC +C + + E G + Sbjct: 18 RTQ--PLWLLAELSYACPLQCPYCSNPLDFADHRH--ELTTEDWLRVFREARAMGATQLG 73 Query: 87 YCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119 + +GGEPLL+ D+ LI K G+ + T+ Sbjct: 74 F---SGGEPLLRRDLEVLIAEARKLGYYTNLITS 104 >gi|283853203|ref|ZP_06370455.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B] gi|283571376|gb|EFC19384.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B] Length = 350 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR + G ++ + LI+ TG + T Sbjct: 15 CNLAC--------KHCR----AEACLDPWPGE-FDTTEAKALIDTFPETG---SPIIIFT 58 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPLL+ D+ L++ + + NGT+ Sbjct: 59 GGEPLLRPDIFELVRHAGSKDLRCVMAPNGTL 90 >gi|254294676|ref|YP_003060699.1| glycosyl transferase family 2 [Hirschia baltica ATCC 49814] gi|254043207|gb|ACT60002.1| glycosyl transferase family 2 [Hirschia baltica ATCC 49814] Length = 748 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 19/96 (19%) Query: 30 SGCNLWSGREQDRLSA-------------QCRFC-DTDFVGIQGTKGGRYNVDQLADLIE 75 SGC R + +C +C T + G + + + LA+L+E Sbjct: 400 SGCPYIDRRTPKPDTISYISLENFSYCNMRCTYCSPTYYGGQEASYS---TPNILANLLE 456 Query: 76 EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111 + + V GGEP L + + AL Sbjct: 457 QSDNLSSNC--HVVWGGGEPTLSPNFKPVNALLSAN 490 >gi|163869037|ref|YP_001610268.1| hypothetical protein Btr_2240 [Bartonella tribocorum CIP 105476] gi|161018715|emb|CAK02273.1| hypothetical protein BT_2240 [Bartonella tribocorum CIP 105476] Length = 270 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 90 LTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 L+GGEPL+ + ++ LN+ G + + TNG Sbjct: 2 LSGGEPLMHPKLKDILLTLNELGLPVELNTNG 33 >gi|155241764|gb|ABT18046.1| heme d1 biosynthesis protein [Heliobacillus mobilis] Length = 331 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 49 FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL 107 FCD + + + L++E G + + +GGEPL++ D+ L+ Sbjct: 14 FCDHCYRDAGAKAEQELSTVEGKQLLDEIAKAG---FKIMIFSGGEPLMRPDIVELVAYA 70 Query: 108 NKRGFEIAVETNGTI 122 +G TNGT+ Sbjct: 71 TSKGLRSVFGTNGTL 85 >gi|77166081|ref|YP_344606.1| pyrroloquinoline quinone biosynthesis protein PqqE [Nitrosococcus oceani ATCC 19707] gi|254435298|ref|ZP_05048805.1| coenzyme PQQ biosynthesis protein E [Nitrosococcus oceani AFC27] gi|76884395|gb|ABA59076.1| Coenzyme PQQ biosynthesis protein E [Nitrosococcus oceani ATCC 19707] gi|207088409|gb|EDZ65681.1| coenzyme PQQ biosynthesis protein E [Nitrosococcus oceani AFC27] Length = 385 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 17/106 (16%) Query: 19 HAGRVAVFCRFSGCNLWSGREQDRL-SAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIE 75 G R LW E QC +C DF + + + Sbjct: 11 FTGNA----RTQ--PLWLLAELTYACPLQCPYCSNPLDFANYKHE----LSTKDWLRVFH 60 Query: 76 EQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 E G + + +GGEPL + D+ LI K G+ + T+G Sbjct: 61 EARAMGAAQLGF---SGGEPLARRDLEVLITEARKLGYYTNLITSG 103 >gi|87119391|ref|ZP_01075289.1| hypothetical protein MED121_14015 [Marinomonas sp. MED121] gi|86165782|gb|EAQ67049.1| hypothetical protein MED121_14015 [Marinomonas sp. MED121] Length = 465 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 15/78 (19%) Query: 46 QCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-- 102 CRFC +F + +G + + D++A+ EE W+ G E + GG L D+ Sbjct: 143 GCRFC--NFAKSKEEEGAEFLSFDEIANRAEEAWLKGATE---VCIQGG---LHPDIDKD 194 Query: 103 ----LIQALNKRGFEIAV 116 L+ A+ R +I + Sbjct: 195 YYKNLVLAVKARVPDIHI 212 >gi|325264091|ref|ZP_08130823.1| putative pyruvate formate-lyase 1 activating enzyme [Clostridium sp. D5] gi|324030575|gb|EGB91858.1| putative pyruvate formate-lyase 1 activating enzyme [Clostridium sp. D5] Length = 315 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%) Query: 88 CVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 ++GGEP+LQ ++AL +G + A++T+G Sbjct: 129 VTVSGGEPVLQHKFLYEFLEALKMQGVDTALDTSG 163 >gi|254425895|ref|ZP_05039612.1| hypothetical protein S7335_463 [Synechococcus sp. PCC 7335] gi|196188318|gb|EDX83283.1| hypothetical protein S7335_463 [Synechococcus sp. PCC 7335] Length = 228 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 20/96 (20%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 GR AV GC +C C + + +L++ W+ Sbjct: 57 GRRAV-VWLQGC-----------LRECPSC----FNPASWSFEENQILSIDELVK--WVL 98 Query: 81 GEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114 E E +GGEP Q + + L G + Sbjct: 99 DEPENEGITFSGGEPFWQATALAAVSRQLKAHGLNV 134 >gi|304389698|ref|ZP_07371657.1| molybdenum cofactor biosynthesis protein A [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326874|gb|EFL94113.1| molybdenum cofactor biosynthesis protein A [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 362 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 63/185 (34%), Gaps = 39/185 (21%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY----CVLTGGEPL 96 DR +C +C + +L D E + G R LTGGEPL Sbjct: 42 DRCDLRCSYC------LPRGGVKWVPRRELLDASEILRLAGIAIHRLGITQVRLTGGEPL 95 Query: 97 LQVDVPLIQALNKRGF-------EIAVETN--------------GTIEPPQGIDWICVSP 135 L+ D+ I A + F ++A+ TN G +D + P Sbjct: 96 LRPDLLEIAAGVRESFVSAGLDPQLALTTNARSLAPLAAALRATGIRRINISLD--TLDP 153 Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 + G EL ++ + GF + + +D L E L + +C + Sbjct: 154 NRFAQIA--GRDELAKALAGIDAA--LSAGFQTVKMNTVMLDRVSLREAPEL-LRFCLER 208 Query: 196 P-KWR 199 +WR Sbjct: 209 GIEWR 213 >gi|227487962|ref|ZP_03918278.1| molybdenum cofactor biosynthesis protein A [Corynebacterium glucuronolyticum ATCC 51867] gi|227092053|gb|EEI27365.1| molybdenum cofactor biosynthesis protein A [Corynebacterium glucuronolyticum ATCC 51867] Length = 335 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 67/183 (36%), Gaps = 29/183 (15%) Query: 41 DRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 DR + +C +C +++ T + + +E+ I TGGEPL Sbjct: 24 DRCNLRCTYCMPAEGLEWIPTPDTLTDEETIRLIRIAVEQLGIQQ------VRFTGGEPL 77 Query: 97 LQVDVP----LIQALNKRGFEIAVETNGT-------IEPPQGIDWICVS-PKAGCD--LK 142 L+ +P +AL A+ TNG + G+D + +S D + Sbjct: 78 LRKSLPEIITATKALTPSP-STAITTNGVSLHRHARVLKDAGLDRVNISLDSLDNDTYTR 136 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN-PKWRLS 201 + L V + V+ E IG + + M G + LA +C Q+ + R Sbjct: 137 LTRRDRLDDVLTSIRVASE--IGLTPVKVNTVVMPGVNEGDIVPLA-EFCLQHGAQLRFI 193 Query: 202 VQT 204 Q Sbjct: 194 EQM 196 >gi|158521238|ref|YP_001529108.1| radical SAM domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158510064|gb|ABW67031.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3] Length = 395 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 8/92 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 + R + +C C + + + D+ LI++ + + + + Sbjct: 40 PVVVWNITKRCNLKCVHC---YAHATPQAQDNELSTDEGKALIDDL---ADFKAPVLLFS 93 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122 GGEPL++ D+P L K+G + TNGT+ Sbjct: 94 GGEPLMRKDLPELAGYAVKKGMRAVISTNGTL 125 >gi|291618414|ref|YP_003521156.1| YfgB [Pantoea ananatis LMG 20103] gi|291153444|gb|ADD78028.1| YfgB [Pantoea ananatis LMG 20103] gi|327394806|dbj|BAK12228.1| radical SAM Cfr family YfgB [Pantoea ananatis AJ13355] Length = 389 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 123 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 182 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL ++ VP ++ L+ GF + + T+G + + D I V Sbjct: 183 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 233 >gi|269468265|gb|EEZ79949.1| coproporphyrinogen III oxidase [uncultured SUP05 cluster bacterium] Length = 397 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 34/101 (33%), Gaps = 11/101 (10%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 L +C +CD F +G Y L DL ++ + + G Sbjct: 28 PLSLYIHYPWCVKKCPYCD--FNSHEGEDRNGYIEALLKDLDKDLKYVQGRSIHSIFIGG 85 Query: 93 GEPLL---QVDVPLIQALN-----KRGFEIAVETN-GTIEP 124 G P L L L ++ EI +ETN GT E Sbjct: 86 GTPSLMSADELHELFTGLKSKLTFEKNIEITLETNPGTFEV 126 >gi|239940746|ref|ZP_04692683.1| radical SAM domain-containing protein [Streptomyces roseosporus NRRL 15998] gi|239987224|ref|ZP_04707888.1| radical SAM domain-containing protein [Streptomyces roseosporus NRRL 11379] gi|291444185|ref|ZP_06583575.1| radical SAM domain-containing protein [Streptomyces roseosporus NRRL 15998] gi|291347132|gb|EFE74036.1| radical SAM domain-containing protein [Streptomyces roseosporus NRRL 15998] Length = 374 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 22/100 (22%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCV 89 GCN C+ C ++G + G G + +L D++ E + + Sbjct: 90 GCNF-----------GCKHC---YLGERPFSGLGWEDKVRLLDIMREAGVLWLQ------ 129 Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGI 128 +TGGEP + D + + G + + TNG++ + Sbjct: 130 ITGGEPTMDPDFQGAYRYAWQAGMMLTISTNGSLLWRPDL 169 >gi|218706020|ref|YP_002413539.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli UMN026] gi|293405958|ref|ZP_06649950.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412] gi|298381759|ref|ZP_06991358.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli FVEC1302] gi|300898379|ref|ZP_07116722.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1] gi|254807179|sp|B7N6A5|RLMN_ECOLU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|218433117|emb|CAR14014.1| putative Fe-S containing enzyme [Escherichia coli UMN026] gi|291428166|gb|EFF01193.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412] gi|298279201|gb|EFI20715.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli FVEC1302] gi|300357919|gb|EFJ73789.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1] Length = 384 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL ++ VP ++ L+ GF + + T+G + + D I V Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 228 >gi|22537545|ref|NP_688396.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae 2603V/R] gi|22534427|gb|AAN00269.1|AE014256_1 pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae 2603V/R] Length = 262 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 40/127 (31%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +C++C DT + Sbjct: 16 TESFGSVDGPG---------IRFIIFMQGC-----------KMRCQYCHNPDTWEMETNN 55 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQAL----NKRGFE 113 +K + D+++E G+ ++GGE +LQ+D I AL K G Sbjct: 56 SKER-----TVEDVLKEALRYKHFWGKDGGITVSGGEAMLQID--FITALFIEAKKLGIH 108 Query: 114 IAVETNG 120 ++T G Sbjct: 109 TTLDTCG 115 >gi|297526807|ref|YP_003668831.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710] gi|297255723|gb|ADI31932.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710] Length = 316 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 12/96 (12%) Query: 90 LTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI-------EPPQGIDWICV---SPKAG 138 LTGGEPL++ D+ ++ + G +++ TNG+ + +D I V S K Sbjct: 67 LTGGEPLIRDDIVDIVHEIRSVGGVVSITTNGSRLAEFAEKLAEEKVDHINVSLHSLKPD 126 Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174 K G +L+ V + + E + + L Sbjct: 127 V-FKTITGGDLERVLAGIFKALEYGLKLKIDYVILS 161 >gi|297584282|ref|YP_003700062.1| pyruvate formate-lyase activating enzyme [Bacillus selenitireducens MLS10] gi|297142739|gb|ADH99496.1| pyruvate formate-lyase activating enzyme [Bacillus selenitireducens MLS10] Length = 249 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 22/101 (21%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F GC +C++C D+ G +V +L + I++ Sbjct: 23 IF--TQGC-----------LLRCQYCHNPDS----WDREAGTDMSVQELIEDIKKYIPYM 65 Query: 82 EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120 G ++GGEPLLQV L L G A++++G Sbjct: 66 NASGGGVTVSGGEPLLQVPFLTALFTELKSLGVHTAIDSSG 106 >gi|15889001|ref|NP_354682.1| molybdenum cofactor biosynthesis protein A [Agrobacterium tumefaciens str. C58] gi|24211986|sp|Q8UER0|MOAA_AGRT5 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|15156789|gb|AAK87467.1| molybdenum cofactor biosynthesis protein A [Agrobacterium tumefaciens str. C58] Length = 349 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 9/83 (10%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C ++ + K +++L L G ++ R LTGGEPL++ + Sbjct: 38 DRCDFRCTYCMSEHMTFL-PKKDLLTLEELDRLCSVFITRGVRKLR---LTGGEPLVRKN 93 Query: 101 VPLIQALNKRGFEIAVETNGTIE 123 + + + G + +GT++ Sbjct: 94 I--MSLVRNLGRHVQ---SGTLD 111 >gi|319761727|ref|YP_004125664.1| oxygen-independent coproporphyrinogen iii oxidase [Alicycliphilus denitrificans BC] gi|317116288|gb|ADU98776.1| oxygen-independent coproporphyrinogen III oxidase [Alicycliphilus denitrificans BC] Length = 411 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 34/106 (32%), Gaps = 17/106 (16%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKG------GRYNVDQLADLIEEQWITGEKEGR 86 L +C +CD F Q G RY +ADL + + Sbjct: 34 PLSLYVHLPWCLRKCPYCD--FNSHQAPGGSEALPEARYTAALVADLEAALPLVWGRTVH 91 Query: 87 YCVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIE 123 + GG P L + + L G E+ +E N GT E Sbjct: 92 SIFIGGGTPSLFSPEAMDRLLGDIRARLPLDAGCEVTLEANPGTFE 137 >gi|210620896|ref|ZP_03292313.1| hypothetical protein CLOHIR_00256 [Clostridium hiranonis DSM 13275] gi|210155108|gb|EEA86114.1| hypothetical protein CLOHIR_00256 [Clostridium hiranonis DSM 13275] Length = 434 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 20/104 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR C T+ + +V + D + E ++T Sbjct: 113 CNL-----------ACRHCCTNCNSTEKDILTTEDVKSIMDFVAELEPYEF------IIT 155 Query: 92 GGEPLLQVDVPL-IQALNKRGFEIA--VETNGTIEPPQGIDWIC 132 GGEP+++ D + ++ + + TN T+ +D+I Sbjct: 156 GGEPMIRSDFEECVHYFKEKDCKTELVLSTNATLIDESNVDFIV 199 >gi|116073729|ref|ZP_01470991.1| hypothetical protein RS9916_34802 [Synechococcus sp. RS9916] gi|116069034|gb|EAU74786.1| hypothetical protein RS9916_34802 [Synechococcus sp. RS9916] Length = 346 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 9/77 (11%) Query: 28 RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 R + C Q CRFC +G ++ D + ++ + Sbjct: 101 RLTVC----VSSQVGCPMACRFC----ATGKGGLQRSLATHEIVDQVLSIREVMDRRPSH 152 Query: 88 CVLTG-GEPLLQVDVPL 103 V G GEPLL +D L Sbjct: 153 VVFMGMGEPLLNIDAVL 169 >gi|293609283|ref|ZP_06691585.1| molybdopterin biosynthesis protein [Acinetobacter sp. SH024] gi|292827735|gb|EFF86098.1| molybdopterin biosynthesis protein [Acinetobacter sp. SH024] Length = 346 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 16/106 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + + ++ LI+ ++ +TGGEPL++ Sbjct: 33 DRCNFKCVYC----MPEHPEWLNKQDLLSFEALIQFCSFMVQQGIESIRITGGEPLMRQG 88 Query: 101 VPL----IQALNKRGF-EIAVETNGTIEP-------PQGIDWICVS 134 + +QAL G I++ TNG G+D + +S Sbjct: 89 IVHFVRDLQALKALGLKRISMTTNGHYLAKYAQQLKDAGLDDLNIS 134 >gi|269468050|gb|EEZ79768.1| coproporphyrinogen III oxidase [uncultured SUP05 cluster bacterium] Length = 368 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 34/101 (33%), Gaps = 11/101 (10%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 L +C +CD F +G Y L DL ++ + + G Sbjct: 6 PLSLYIHYPWCVKKCPYCD--FNSHEGEDRNGYIEALLKDLDKDLKYVQGRSIHSIFIGG 63 Query: 93 GEPLL---QVDVPLIQALN-----KRGFEIAVETN-GTIEP 124 G P L L L ++ EI +ETN GT E Sbjct: 64 GTPSLMSADELHELFTGLKSKLTFEKNIEITLETNPGTFEV 104 >gi|238019572|ref|ZP_04599998.1| hypothetical protein VEIDISOL_01441 [Veillonella dispar ATCC 17748] gi|237864271|gb|EEP65561.1| hypothetical protein VEIDISOL_01441 [Veillonella dispar ATCC 17748] Length = 491 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 26/112 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ--LADLIEEQWITGEKEGRYCV 89 CNL C++C F G + + +A + I ++C Sbjct: 129 CNL-----------ACKYC---FASQGDYGGVKRELMSFDVAKRAVDFLIKMSGPRQHCE 174 Query: 90 LT--GGEPLLQVD--------VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 + GGEPLL D + IQ + + F++ + TNG + ID++ Sbjct: 175 IDFFGGEPLLNWDVVKQTVEYIESIQEKHNKIFKLTLTTNGMLLTQDKIDYV 226 >gi|90423385|ref|YP_531755.1| molybdenum cofactor synthesis-like [Rhodopseudomonas palustris BisB18] gi|90105399|gb|ABD87436.1| molybdenum cofactor synthesis-like [Rhodopseudomonas palustris BisB18] Length = 354 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 15/86 (17%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR + +C +C D F+ K ++++ L G ++ R LTGGEPL+ Sbjct: 48 DRCNLRCHYCMAEDMTFL----PKAEVLTLEEIDRLCASFIALGTRKLR---LTGGEPLV 100 Query: 98 QVDVPLIQALNKRGFEIAVETNGTIE 123 + V + + G + +G ++ Sbjct: 101 RSGV--MDLVRALGRHLQ---SGALD 121 >gi|315650867|ref|ZP_07903913.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315486894|gb|EFU77230.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 354 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 30/118 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C FC + G D L +++ E E +Y Sbjct: 18 CNL-----------RCNFC---YAKSAGYAHNDMIKYDDLKSIVD---FCCEAEVKYIFF 60 Query: 91 TGGEPLLQV-DVPLIQALNKRGFEI--AVETNGTI---------EPPQGIDWICVSPK 136 TGGEPL V +++ + + +I AV TNG + GI +I +S K Sbjct: 61 TGGEPLTYPYLVDILKYIKSKSHKILTAVATNGILLKNIGLCRDLIESGIGYIDISMK 118 >gi|260886564|ref|ZP_05897827.1| radical SAM domain protein [Selenomonas sputigena ATCC 35185] gi|330839603|ref|YP_004414183.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185] gi|260863707|gb|EEX78207.1| radical SAM domain protein [Selenomonas sputigena ATCC 35185] gi|329747367|gb|AEC00724.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185] Length = 330 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 7/81 (8%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQ 105 C+ C + + + L++E G + + +GGEPL + D + L++ Sbjct: 15 CKHC---YRDAGCKAEEELSTAEAKKLLDEIARAG---FKIMIFSGGEPLTRPDILELVE 68 Query: 106 ALNKRGFEIAVETNGTIEPPQ 126 K G TNGT+ P+ Sbjct: 69 HATKLGLRSVFGTNGTLITPE 89 >gi|226227341|ref|YP_002761447.1| hypothetical protein GAU_1935 [Gemmatimonas aurantiaca T-27] gi|226090532|dbj|BAH38977.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 335 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 9/69 (13%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L + R +A+C FCD + ++ + + AD+ TGG Sbjct: 29 LLNFEVTMRCNARCGFCD--YWKTPASEKA-HELKSFADI------ARHFSPMLVTFTGG 79 Query: 94 EPLLQVDVP 102 EP L+ D+ Sbjct: 80 EPTLRRDLE 88 >gi|322831763|ref|YP_004211790.1| radical SAM enzyme, Cfr family [Rahnella sp. Y9602] gi|321166964|gb|ADW72663.1| radical SAM enzyme, Cfr family [Rahnella sp. Y9602] Length = 399 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C FC T G + Q+ A +I + G + V+ G Sbjct: 132 CVSSQVGCALECTFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVAGTRPITNVVMMG 191 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL ++ VP ++ L+ GF + + T+G + + D I V Sbjct: 192 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 242 >gi|284165005|ref|YP_003403284.1| radical SAM protein [Haloterrigena turkmenica DSM 5511] gi|284014660|gb|ADB60611.1| Radical SAM domain protein [Haloterrigena turkmenica DSM 5511] Length = 405 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL+ C C + G ++ + +E + + Sbjct: 49 CNLY-----------CSHC---YAGADLKAAPSEFSTREAKTFLE---GVADFGAPVILF 91 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 +GGEPL++ D+ L+ G + +NGT+ Sbjct: 92 SGGEPLVRDDLTELVDYAADLGLRPVLSSNGTL 124 >gi|226939443|ref|YP_002794516.1| MoaA1 [Laribacter hongkongensis HLHK9] gi|226714369|gb|ACO73507.1| MoaA1 [Laribacter hongkongensis HLHK9] Length = 324 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 45/119 (37%), Gaps = 23/119 (19%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 R S DR +C +C F G + D+ L+ G + Sbjct: 13 VRLS--------VTDRCDLRCSYCLPKGFKGFE-EPAHWLTFDETERLMRVFVALGTRRV 63 Query: 86 RYCVLTGGEPLLQVDV-PLIQALNKR-GF-EIAVETNGTIEP-------PQGIDWICVS 134 R LTGGEPLL+ V L L + G ++++ TN T G+D I VS Sbjct: 64 R---LTGGEPLLRRGVAELASRLKRIDGLADLSLSTNATQLARHAVALKAAGVDRINVS 119 >gi|154503634|ref|ZP_02040694.1| hypothetical protein RUMGNA_01458 [Ruminococcus gnavus ATCC 29149] gi|260589858|ref|ZP_05855771.1| putative radical SAM domain protein [Blautia hansenii DSM 20583] gi|153795734|gb|EDN78154.1| hypothetical protein RUMGNA_01458 [Ruminococcus gnavus ATCC 29149] gi|260539665|gb|EEX20234.1| putative radical SAM domain protein [Blautia hansenii DSM 20583] Length = 463 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 29/132 (21%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVD---QLADLIEEQWITGEKEG 85 CNL +C++C + G + G + + D I E GEKE Sbjct: 112 QECNL-----------RCKYC---YAGDGEYSNPGIMKYEIGKKAIDFIAEFC--GEKEQ 155 Query: 86 RYCVLTGGEPLLQ--VDVPLIQA----LNKRGFEI--AVETNGTIEPPQGIDWICVSPKA 137 + GGEPL+ L++ +G + A+ TNGT+ + I+ + + Sbjct: 156 FNIIFFGGEPLMDFRKLKKLVEYAEYVAKNKGKTVGFAITTNGTL-LTEEIEHFLIEKRF 214 Query: 138 GCDLKIKGGQEL 149 L + GG+E+ Sbjct: 215 NITLSLDGGEEV 226 >gi|119504325|ref|ZP_01626405.1| pyrroloquinoline quinone biosynthesis protein PqqE [marine gamma proteobacterium HTCC2080] gi|119459833|gb|EAW40928.1| pyrroloquinoline quinone biosynthesis protein PqqE [marine gamma proteobacterium HTCC2080] Length = 375 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 7/90 (7%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E R QC +C + G + + ++++ G + + + Sbjct: 10 PLWLLAELTYRCPLQCPYCSNPVEL--ASAGTELSTEDWFRVLQQARKMGAAQLGF---S 64 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGEPL+ Q L+ + GF + T+G Sbjct: 65 GGEPLVRQDLELLVAEARRLGFYSNLITSG 94 >gi|167040005|ref|YP_001662990.1| radical SAM domain-containing protein [Thermoanaerobacter sp. X514] gi|300914096|ref|ZP_07131412.1| Radical SAM domain protein [Thermoanaerobacter sp. X561] gi|307724670|ref|YP_003904421.1| Radical SAM domain-containing protein [Thermoanaerobacter sp. X513] gi|166854245|gb|ABY92654.1| Radical SAM domain protein [Thermoanaerobacter sp. X514] gi|300889031|gb|EFK84177.1| Radical SAM domain protein [Thermoanaerobacter sp. X561] gi|307581731|gb|ADN55130.1| Radical SAM domain protein [Thermoanaerobacter sp. X513] Length = 460 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 15/67 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C++C + G +++A+ + + + + V Sbjct: 92 CNL-----------KCKYC---YANHGDYNQGQAIMTEEIAEKVADFIKLNFPKVKVIVF 137 Query: 91 TGGEPLL 97 GGEPLL Sbjct: 138 FGGEPLL 144 >gi|167037358|ref|YP_001664936.1| radical SAM domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115773|ref|YP_004185932.1| Radical SAM domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856192|gb|ABY94600.1| Radical SAM domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928864|gb|ADV79549.1| Radical SAM domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 460 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 15/67 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C++C + G +++A+ + + + + V Sbjct: 92 CNL-----------KCKYC---YANHGDYNQGQAIMTEEIAEKVADFIKLNFPKVKVIVF 137 Query: 91 TGGEPLL 97 GGEPLL Sbjct: 138 FGGEPLL 144 >gi|25011510|ref|NP_735905.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae NEM316] gi|76797662|ref|ZP_00779931.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae 18RS21] gi|24413049|emb|CAD47127.1| Unknown [Streptococcus agalactiae NEM316] gi|76586956|gb|EAO63445.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae 18RS21] gi|319745350|gb|EFV97664.1| pyruvate formate-lyase activating enzyme [Streptococcus agalactiae ATCC 13813] Length = 262 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 40/127 (31%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +C++C DT + Sbjct: 16 TESFGSVDGPG---------IRFIIFMQGC-----------KMRCQYCHNPDTWEMETNN 55 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQAL----NKRGFE 113 +K + D+++E G+ ++GGE +LQ+D I AL K G Sbjct: 56 SKER-----TVEDVLKEALRYKHFWGKDGGITVSGGEAMLQID--FITALFIEAKKLGIH 108 Query: 114 IAVETNG 120 ++T G Sbjct: 109 TTLDTCG 115 >gi|124028060|ref|YP_001013380.1| molybdenum cofactor biosynthesis protein [Hyperthermus butylicus DSM 5456] gi|123978754|gb|ABM81035.1| Molybdenum cofactor biosynthesis enzyme [Hyperthermus butylicus DSM 5456] Length = 347 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 4/82 (4%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VD 100 R + C FC + +++++ L + G + + +TGGEP ++ Sbjct: 5 RCNFACFFCHMEGYKQGYRVEDEVSLEEIELLAKAAKRIGIEAFK---ITGGEPTVRSDL 61 Query: 101 VPLIQALNKRGFEIAVETNGTI 122 V +++ L+ GF +++ TN ++ Sbjct: 62 VDIVKILHSYGFYVSMTTNASL 83 >gi|53804937|ref|YP_113380.1| hypothetical protein MCA0891 [Methylococcus capsulatus str. Bath] gi|53758698|gb|AAU92989.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath] Length = 344 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 20/87 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 C L G S G+ ++Q+++ ++ T Sbjct: 15 CPLTCGHCITESSPH--------------VKGKMQIEQVSEYLKVIPPFASG----VCFT 56 Query: 92 GGEPLL--QVDVPLIQALNKRGFEIAV 116 GGEP L Q + L+ G + ++ Sbjct: 57 GGEPFLYYQDILELVLQAKDLGLKTSL 83 >gi|315230541|ref|YP_004070977.1| hypothetical protein TERMP_00777 [Thermococcus barophilus MP] gi|315183569|gb|ADT83754.1| hypothetical protein TERMP_00777 [Thermococcus barophilus MP] Length = 348 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 19/81 (23%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F FSGCN +C FC ++ Q G RY+ + +A I + G K Sbjct: 134 TIF--FSGCNF-----------RCVFC-QNWDISQYRVGLRYSPEDMATKIAVAYAEGAK 179 Query: 84 EGRYCVLTGGEPLLQVDVPLI 104 + GGEP ++P I Sbjct: 180 NVNFV---GGEPT--PNLPFI 195 >gi|307945307|ref|ZP_07660643.1| molybdenum cofactor biosynthesis protein A [Roseibium sp. TrichSKD4] gi|307771180|gb|EFO30405.1| molybdenum cofactor biosynthesis protein A [Roseibium sp. TrichSKD4] Length = 391 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 20/92 (21%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ K ++++L L G ++ R LTGGEPL+ Sbjct: 80 DRCDFRCVYCMAEDMTFL----PKREVLSLEELDRLCTAFIEKGVRKLR---LTGGEPLV 132 Query: 98 QVDVPLIQALNKRGFEI---AVE-----TNGT 121 + ++ + + G I A+E TNG+ Sbjct: 133 RKNI--MSLIRSLGRHIDSGALEELTVTTNGS 162 >gi|307692334|ref|ZP_07634571.1| radical SAM family protein [Ruminococcaceae bacterium D16] Length = 471 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 29/113 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRY-- 87 CNL +C++C F GR + + I+ W+ + R Sbjct: 107 CNL-----------RCKYC---FASTGDFGTGRKIMDFETAKRAID--WVVAKSGKRRNI 150 Query: 88 -CVLTGGEPLLQVDVP--------LIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GGEPL+ +D ++ + + F + TNG + + I++I Sbjct: 151 EVDFFGGEPLMAMDTVKKTVEYARSLEKEHDKVFRFTITTNGVLLNDENIEYI 203 >gi|256790251|ref|ZP_05528682.1| pyruvate formate-lyase activating enzyme [Streptomyces lividans TK24] gi|289774124|ref|ZP_06533502.1| pyruvate-formate lyase activating enzyme [Streptomyces lividans TK24] gi|289704323|gb|EFD71752.1| pyruvate-formate lyase activating enzyme [Streptomyces lividans TK24] Length = 170 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 8/56 (14%) Query: 89 VLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWICVSPK 136 LTGGEPLLQ +++ + A++T+G + E D + + K Sbjct: 2 TLTGGEPLLQPAFTAAVLRRCKEAALHTALDTSGFLGARASDELLADTDLVLLDVK 57 >gi|76787669|ref|YP_330039.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae A909] gi|76562726|gb|ABA45310.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae A909] Length = 262 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 40/127 (31%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +C++C DT + Sbjct: 16 TESFGSVDGPG---------IRFIIFMQGC-----------KMRCQYCHNPDTWEMETNN 55 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQAL----NKRGFE 113 +K + D+++E G+ ++GGE +LQ+D I AL K G Sbjct: 56 SKER-----TVEDVLKEALRYKHFWGKDGGITVSGGEAMLQID--FITALFIEAKKLGIH 108 Query: 114 IAVETNG 120 ++T G Sbjct: 109 TTLDTCG 115 >gi|77405768|ref|ZP_00782853.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae H36B] gi|77175625|gb|EAO78409.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae H36B] Length = 262 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 40/127 (31%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +C++C DT + Sbjct: 16 TESFGSVDGPG---------IRFIIFMQGC-----------KMRCQYCHNPDTWEMETNN 55 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQAL----NKRGFE 113 +K + D+++E G+ ++GGE +LQ+D I AL K G Sbjct: 56 SKER-----TVEDVLKEALRYKHFWGKDGGITVSGGEAMLQID--FITALFIEAKKLGIH 108 Query: 114 IAVETNG 120 ++T G Sbjct: 109 TTLDTCG 115 >gi|324326187|gb|ADY21447.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar finitimus YBT-020] Length = 337 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 14/89 (15%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D+ +Q + D++ L G ++ R LTGGE Sbjct: 22 DRCNFRCTYCMPAEVFGADYAFLQEEF--LLSFDEIERLARLFIGMGVEKIR---LTGGE 76 Query: 95 PLLQVDVP-LIQAL-NKRGFE-IAVETNG 120 PLL+ D+ LI L G + I + TNG Sbjct: 77 PLLRKDLSQLIARLTKLEGLKDIGLTTNG 105 >gi|262369704|ref|ZP_06063032.1| molybdopterin biosynthesis protein [Acinetobacter johnsonii SH046] gi|262315772|gb|EEY96811.1| molybdopterin biosynthesis protein [Acinetobacter johnsonii SH046] Length = 339 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 9/87 (10%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + ++++ +L + +TGGEPL++ Sbjct: 27 DRCNFKCVYC----MPEHPEWMKKHDLLSFEELYHFCKFMVQHGIEQIRITGGEPLMRQG 82 Query: 101 ----VPLIQALNKRGF-EIAVETNGTI 122 + +Q+L K+G I++ TNG Sbjct: 83 VVHFIEQLQSLKKQGLKRISMTTNGHY 109 >gi|148244382|ref|YP_001219076.1| oxygen-independent coproporphyrinogen III oxidase [Candidatus Vesicomyosocius okutanii HA] gi|146326209|dbj|BAF61352.1| oxygen-independent coproporphyrinogen III oxidase [Candidatus Vesicomyosocius okutanii HA] Length = 372 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 32/95 (33%), Gaps = 10/95 (10%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 L +C +CD F + Y L DL E+ + + L G Sbjct: 9 PLSLYIHYPWCVKKCPYCD--FNSHDCNQRSGYIESLLEDLNEDLDYIQGRAIQSIFLGG 66 Query: 93 GEPLL---QVDVPLIQALNKR-----GFEIAVETN 119 G P L Q L L KR EI +ETN Sbjct: 67 GTPSLMSEQELFKLFTGLKKRLKFVNDIEITLETN 101 >gi|302874950|ref|YP_003843583.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|307690432|ref|ZP_07632878.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|302577807|gb|ADL51819.1| Radical SAM domain protein [Clostridium cellulovorans 743B] Length = 454 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 25/111 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWITGEKEGRY-C 88 CNL +C++C F G G+ ++D +E Sbjct: 105 CNL-----------RCKYC---FADEGEYHGHKGKMSIDTAKKALEYVIKRSGPRKNIEV 150 Query: 89 VLTGGEPLLQVDV--PLIQALNKRG------FEIAVETNGTIEPPQGIDWI 131 L GGEPL+ +DV ++Q + G + TN T+ P+ +D++ Sbjct: 151 DLFGGEPLMAMDVIKEVVQYGKELGENHKKNIRFTMTTNSTLLTPEVVDFL 201 >gi|196046064|ref|ZP_03113292.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus 03BB108] gi|228914750|ref|ZP_04078359.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|196023119|gb|EDX61798.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus 03BB108] gi|228845069|gb|EEM90111.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 306 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-R 110 D+ +Q D++ L G + R LTGGEPLL+ D+P LI L K Sbjct: 9 DYAFLQEEC--LLTFDEIERLARLFISMGVNKIR---LTGGEPLLRKDLPKLIARLAKLE 63 Query: 111 GFE-IAVETNG 120 G + I + TNG Sbjct: 64 GLKDIGLTTNG 74 >gi|196033904|ref|ZP_03101315.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus W] gi|196039776|ref|ZP_03107080.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus NVH0597-99] gi|228933471|ref|ZP_04096324.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|195993584|gb|EDX57541.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus W] gi|196029479|gb|EDX68082.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus NVH0597-99] gi|228826200|gb|EEM71980.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 306 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-R 110 D+ +Q D++ L G + R LTGGEPLL+ D+P LI L K Sbjct: 9 DYAFLQEEC--LLTFDEIERLARLFISMGVNKIR---LTGGEPLLRKDLPKLIARLAKLE 63 Query: 111 GFE-IAVETNG 120 G + I + TNG Sbjct: 64 GLKDIGLTTNG 74 >gi|168187698|ref|ZP_02622333.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum C str. Eklund] gi|169294421|gb|EDS76554.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum C str. Eklund] Length = 164 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 20/95 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 R A+F SGCN Q++ + G ++ + + I+ Sbjct: 20 RSALF--LSGCNHNCDECQNKEMQ------------DASYGDDIELEDILNRIKSNIPL- 64 Query: 82 EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114 + +GGEP Q L + + +I Sbjct: 65 ---IKGVTFSGGEPFEQCKELTILANKIKEENLDI 96 >gi|34419505|ref|NP_899518.1| heme biosynthesis domain protein [Vibrio phage KVP40] gi|34333186|gb|AAQ64341.1| heme biosynthesis domain protein [Vibrio phage KVP40] Length = 350 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 17/93 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR C + T Y++D D + + K VL Sbjct: 103 CNL-----------ACRMC---YGKNSKTYMDLYDIDDHYDY-TQLDFSIPKGVETVVLY 147 Query: 92 GGEPLLQVDV--PLIQALNKRGFEIAVETNGTI 122 GGEP + L + + + E+ + TNGT+ Sbjct: 148 GGEPFMDKRTVEVLTEVMEETNAEVYILTNGTV 180 >gi|317490866|ref|ZP_07949302.1| cfr family radical SAM enzyme [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920413|gb|EFV41736.1| cfr family radical SAM enzyme [Enterobacteriaceae bacterium 9_2_54FAA] Length = 419 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I +TG++ V+ G Sbjct: 153 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAHKVTGQRPITNVVMMG 212 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL ++ VP + L+ GF + + T+G + + + D I V Sbjct: 213 MGEPLLNLNNVVPAMNIMLDDFGFGLSKRRVTLSTSGVVPALEKLGDMIDV 263 >gi|291084751|ref|ZP_06541863.2| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 197 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L+DL + +E + + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVKTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L EI +E N GT+E + ID+ Sbjct: 66 GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113 >gi|213424104|ref|ZP_03356997.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 573 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L+DL + +E + + Sbjct: 201 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVKTIFIG 260 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L EI +E N GT+E + ID+ Sbjct: 261 GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 308 >gi|256389669|ref|YP_003111233.1| radical SAM domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256355895|gb|ACU69392.1| Radical SAM domain protein [Catenulispora acidiphila DSM 44928] Length = 389 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 12/69 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYC 88 CNL + D K G + + +A I E T Sbjct: 33 CNLACSYCYIYEGPDQSWRD---------KPGTMSPETIALTASRIAEHVATHRPPWIEV 83 Query: 89 VLTGGEPLL 97 VL GGEPL+ Sbjct: 84 VLHGGEPLM 92 >gi|229022012|ref|ZP_04178568.1| dehydrogenase [Bacillus cereus AH1272] gi|228739268|gb|EEL89708.1| dehydrogenase [Bacillus cereus AH1272] Length = 369 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q ++ L ++E R +TGGEP+L Sbjct: 39 RCEHCAVGYT-LQPKDPNPLPMELLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 92 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 93 VTPLLKYAHERGVRTQINSNLTIDL 117 >gi|84516756|ref|ZP_01004114.1| molybdenum cofactor biosynthesis protein A [Loktanella vestfoldensis SKA53] gi|84509224|gb|EAQ05683.1| molybdenum cofactor biosynthesis protein A [Loktanella vestfoldensis SKA53] Length = 334 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 14/89 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C K +++L L G K+ R +TGGEPL++ D Sbjct: 22 DRCDFRCVYC-MSENMTFLPKKDLLTLEELDRLCSAFVRLGVKKLR---ITGGEPLVRRD 77 Query: 101 VPLIQALNKRGFEI---AVE-----TNGT 121 + + G + A+E TNG+ Sbjct: 78 I--LTFFKAMGRHLDSGALEELTLTTNGS 104 >gi|77411520|ref|ZP_00787864.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae CJB111] gi|77162446|gb|EAO73413.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae CJB111] Length = 262 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 40/127 (31%) Query: 7 KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59 E F ++ G G RF GC +C++C DT + Sbjct: 16 TESFGSVDGPG---------IRFIIFMQGC-----------KMRCQYCHNPDTWEMETNN 55 Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQAL----NKRGFE 113 +K + D+++E G+ ++GGE +LQ+D I AL K G Sbjct: 56 SKER-----TVEDVLKEALRYKHFWGKDGGITVSGGEAMLQID--FITALFIEAKKLGIH 108 Query: 114 IAVETNG 120 ++T G Sbjct: 109 TTLDTCG 115 >gi|307565227|ref|ZP_07627722.1| radical SAM domain protein [Prevotella amnii CRIS 21A-A] gi|307346067|gb|EFN91409.1| radical SAM domain protein [Prevotella amnii CRIS 21A-A] Length = 378 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 29/116 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-----GGRYNVD---QLADLIEEQWITGEK 83 CNL C +C +V +G K R + + + I E Sbjct: 14 CNL-----------NCDYC---YVFNKGDKSYMREPVRMSEELIKPVVMRINEHCQNNNI 59 Query: 84 EGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIA----VETNGTIEPPQGIDWIC 132 + + GGEPLLQ ++ + + ++TN T+ + ID C Sbjct: 60 SHFFVIFHGGEPLLQPKSFYKMFVETVKNIIHKTHVSYGLQTNATLLTQEWIDLFC 115 >gi|73668862|ref|YP_304877.1| hypothetical protein Mbar_A1335 [Methanosarcina barkeri str. Fusaro] gi|72396024|gb|AAZ70297.1| hypothetical protein Mbar_A1335 [Methanosarcina barkeri str. Fusaro] Length = 363 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL+ C +C + G + ++D + + + G +L Sbjct: 19 CNLY-----------CHYC---YAGSGHPVDQAQLSLDTIERIASDGRKCG---ASSVLL 61 Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +GGEP + D + + G++++V +NGT+ Sbjct: 62 SGGEPFFRKDWFDVFSVFDDYGYDLSVSSNGTL 94 >gi|229159568|ref|ZP_04287582.1| dehydrogenase [Bacillus cereus R309803] gi|228623870|gb|EEK80682.1| dehydrogenase [Bacillus cereus R309803] Length = 375 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q ++ L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMELLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|229171266|ref|ZP_04298856.1| dehydrogenase [Bacillus cereus MM3] gi|228612223|gb|EEK69455.1| dehydrogenase [Bacillus cereus MM3] Length = 375 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q ++ L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMELLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|170744386|ref|YP_001773041.1| hopanoid biosynthesis associated radical SAM protein HpnH [Methylobacterium sp. 4-46] gi|168198660|gb|ACA20607.1| hopanoid biosynthesis associated radical SAM protein HpnH [Methylobacterium sp. 4-46] Length = 384 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 20/119 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C R VD+ + + E V+ Sbjct: 38 CNLAC--------AGCG----KIDYPDEILNKRLPVDEALESVRECG------APVVVIA 79 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEPLL D+P +++ + ++ V TN + + I SP + + G +E+ Sbjct: 80 GGEPLLHKDLPQIVEGIIQQKKFAIVCTN-ALLLEKKISQYKPSPYFTWSIHLDGDKEM 137 >gi|124514503|gb|EAY56016.1| putative radical SAM family protein [Leptospirillum rubarum] Length = 342 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C + R +Q +E + Sbjct: 38 CNL-----------ECAGCG-KIQYPEEILNKRLTPEQCFQAADECG------APVVTIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ ++ ++Q L R + + TN I + +D I S + + G +E Sbjct: 80 GGEPLIHNEIGEIVQGLVDRKRFVYLCTN-AILLEKYLDRIKPSTYLTLSVHLDGLKE 136 >gi|57642234|ref|YP_184712.1| anaerobic ribonucleoside-triphosphate reductase activating enzyme [Thermococcus kodakarensis KOD1] gi|57160558|dbj|BAD86488.1| anaerobic ribonucleoside-triphosphate reductase activating enzyme [Thermococcus kodakarensis KOD1] Length = 236 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 25/102 (24%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ---LADLIEEQWITGEKEG 85 GCNL +C FC + + +D+ L DL ++ Sbjct: 24 LCGCNL-----------KCPFC---HNWLIAEGKECFPLDRGALLGDLSSSSFLVDYFH- 68 Query: 86 RYCVLTGGEPLLQVDVPLIQALNKRG--FEIAVETNGTIEPP 125 +TGGEPL+Q L L + I++ TN T+ P Sbjct: 69 ----ITGGEPLMQ-WAELSSLLAEAKELLPISLNTNLTLLKP 105 >gi|30260587|ref|NP_842964.1| hypothetical protein BA_0421 [Bacillus anthracis str. Ames] gi|47525697|ref|YP_017046.1| hypothetical protein GBAA_0421 [Bacillus anthracis str. 'Ames Ancestor'] gi|49183436|ref|YP_026688.1| hypothetical protein BAS0408 [Bacillus anthracis str. Sterne] gi|65317850|ref|ZP_00390809.1| COG0535: Predicted Fe-S oxidoreductases [Bacillus anthracis str. A2012] gi|170707171|ref|ZP_02897627.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|229603544|ref|YP_002865034.1| hypothetical protein BAA_0486 [Bacillus anthracis str. A0248] gi|254762009|ref|ZP_05213858.1| hypothetical protein BantA9_26321 [Bacillus anthracis str. Australia 94] gi|30253955|gb|AAP24450.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gi|47500845|gb|AAT29521.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49177363|gb|AAT52739.1| conserved hypothetical protein [Bacillus anthracis str. Sterne] gi|170127949|gb|EDS96820.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|229267952|gb|ACQ49589.1| conserved hypothetical protein [Bacillus anthracis str. A0248] Length = 375 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVPTQINSNLTIDL 123 >gi|313902299|ref|ZP_07835704.1| GTP cyclohydrolase subunit MoaA [Thermaerobacter subterraneus DSM 13965] gi|313467450|gb|EFR62959.1| GTP cyclohydrolase subunit MoaA [Thermaerobacter subterraneus DSM 13965] Length = 360 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 10/85 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQL--ADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 DR + +C +C +G + L A++ I LTGGEPLL+ Sbjct: 51 DRCNFRCVYC-----MPEGDIPWIPTTEILTFAEIERVVRIVAGMGVEKIRLTGGEPLLR 105 Query: 99 VDV-PLIQALNK-RGFE-IAVETNG 120 V L+ L + G +++ TNG Sbjct: 106 PGVEELVARLVRVPGIRSVSMTTNG 130 >gi|260892240|ref|YP_003238337.1| Radical SAM domain protein [Ammonifex degensii KC4] gi|260864381|gb|ACX51487.1| Radical SAM domain protein [Ammonifex degensii KC4] Length = 480 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 17/94 (18%) Query: 32 CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 CNL +CR C D + + + ++ L+EE Sbjct: 132 CNL-----------RCRHCYEDAGSLRPRNLPREELSREEKLALVEE---IARANIPTLS 177 Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122 +GGEPL Q + + G +++ TNGT+ Sbjct: 178 FSGGEPLACQDFWEVAAKARELGLYLSMNTNGTL 211 >gi|281419683|ref|ZP_06250682.1| radical SAM domain protein [Prevotella copri DSM 18205] gi|281406212|gb|EFB36892.1| radical SAM domain protein [Prevotella copri DSM 18205] Length = 311 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 21/105 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC + T+ R + DL+ ++ + ++ Sbjct: 26 CNL-----------NCHFC------PKHTRKKRQLSAEEFDLLTDKIRGKVCFLYFHIM- 67 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSP 135 GEPLL +P I ++GF+ + +NGT+ P+ +D + P Sbjct: 68 -GEPLLHPLLPEFINMAREKGFKTVLTSNGTL-LPKAMDLLDTLP 110 >gi|156937619|ref|YP_001435415.1| radical SAM domain-containing protein [Ignicoccus hospitalis KIN4/I] gi|156566603|gb|ABU82008.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I] Length = 592 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 6/89 (6%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 L + +R C +C F + ++Q+ ++++ G LTGG Sbjct: 135 LLNLVVTNRCDLTCWYC--FFYAEKAGYVYEPTLEQIEFMVKQAMRQGVPLA--VQLTGG 190 Query: 94 EPLLQVDVP-LIQALNKRGFE-IAVETNG 120 EP ++ D+P +++ L + G I + T+G Sbjct: 191 EPTMRSDLPEIVRLLRRLGVRHIQLNTHG 219 >gi|126657591|ref|ZP_01728746.1| hypothetical protein CY0110_07369 [Cyanothece sp. CCY0110] gi|126621047|gb|EAZ91761.1| hypothetical protein CY0110_07369 [Cyanothece sp. CCY0110] Length = 338 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL TD + T +N + E + Sbjct: 38 CNLACSGCGKIQHP------TDVLARNLTPEECFNAVE------------ECGAPVVSIP 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPLL + +++ L +R + + TN I + + SP + + G +E Sbjct: 80 GGEPLLHPQIDEIVKGLVERKKFVYLCTN-AILLEKSLHKFEPSPYFCFSVHLDGLRE 136 >gi|294494694|ref|YP_003541187.1| Wyosine base formation domain protein [Methanohalophilus mahii DSM 5219] gi|292665693|gb|ADE35542.1| Wyosine base formation domain protein [Methanohalophilus mahii DSM 5219] Length = 310 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 1/49 (2%) Query: 76 EQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123 E W + + GEP L LI+ RG V TNGT+ Sbjct: 114 ELWQQANEPAHVAISLSGEPTLYPYLDELIEEFRSRGVSTFVVTNGTVP 162 >gi|229114076|ref|ZP_04243501.1| dehydrogenase [Bacillus cereus Rock1-3] gi|228669346|gb|EEL24763.1| dehydrogenase [Bacillus cereus Rock1-3] Length = 375 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q ++ L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMELLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|154484700|ref|ZP_02027148.1| hypothetical protein EUBVEN_02417 [Eubacterium ventriosum ATCC 27560] gi|149734548|gb|EDM50465.1| hypothetical protein EUBVEN_02417 [Eubacterium ventriosum ATCC 27560] Length = 456 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 18/98 (18%) Query: 32 CNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRY--NVDQLADLIEEQWITGEKEGR 86 CN+ D SA C C G R +D++ ++ + G Sbjct: 110 CNVPWLILMDPTSACNLHCTGC------WAAEYGNRLNLTLDEMDSVVTQGKKLGTYLYM 163 Query: 87 YCVLTGGEPLLQVDVPLIQALNKRGFEIAVE--TNGTI 122 + TGGEPL++ D LI+ L K+ E A TNGT+ Sbjct: 164 F---TGGEPLVRKDD-LIK-LCKKHKECAFLAFTNGTL 196 >gi|77465064|ref|YP_354567.1| molybdenum cofactor biosynthesis protein A [Rhodobacter sphaeroides 2.4.1] gi|126464516|ref|YP_001045629.1| molybdenum cofactor biosynthesis protein A [Rhodobacter sphaeroides ATCC 17029] gi|221369058|ref|YP_002520154.1| molybdenum cofactor biosynthesis protein A [Rhodobacter sphaeroides KD131] gi|77389482|gb|ABA80666.1| GTP cyclohydrolase subunit MoaA [Rhodobacter sphaeroides 2.4.1] gi|126106327|gb|ABN78857.1| GTP cyclohydrolase subunit MoaA [Rhodobacter sphaeroides ATCC 17029] gi|221162110|gb|ACM03081.1| GTP cyclohydrolase subunit MoaA [Rhodobacter sphaeroides KD131] Length = 338 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 6/74 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C ++ K +++L L+ G ++ R +TGGEPL++ Sbjct: 26 DRCDLRCTYCMSEHTSFM-PKRELLTLEELDRLVSAFVDLGVRKLR---VTGGEPLVRRG 81 Query: 101 VPLIQALNKRGFEI 114 + + G + Sbjct: 82 I--MTFFQAMGRHV 93 >gi|311278552|ref|YP_003940783.1| radical SAM enzyme, Cfr family [Enterobacter cloacae SCF1] gi|308747747|gb|ADO47499.1| radical SAM enzyme, Cfr family [Enterobacter cloacae SCF1] Length = 388 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 60/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I +TG++ V+ G Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG 181 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL + VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 239 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N R L+ + I Y Sbjct: 240 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 285 >gi|312200419|ref|YP_004020480.1| radical SAM domain protein [Frankia sp. EuI1c] gi|311231755|gb|ADP84610.1| Radical SAM domain protein [Frankia sp. EuI1c] Length = 428 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 27/160 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +A + Q + R +Q I E T VL Sbjct: 62 CNLACDYCYVYSAADSGW------RRQPPRMSRRTAEQAIRRIAEHTRTHGLSQVEIVLH 115 Query: 92 GGEPLLQVDVPLIQALNKR-------GFEIAV--ETNGT------IEPPQGIDW-ICVS- 134 GGEPLL + L + + +TNG ++ D +CVS Sbjct: 116 GGEPLL-AGADFVGWLADELRRQIPPPVRVRIVTQTNGVALRAGLLDLLVERDIAVCVSL 174 Query: 135 --PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 P D + + + + +P+V + E + R Sbjct: 175 DGPSGAHD-RHRRFADGRRSYPRVREALELLTSAPYRRIF 213 >gi|255505300|ref|ZP_05345283.3| radical SAM domain protein [Bryantella formatexigens DSM 14469] gi|255268665|gb|EET61870.1| radical SAM domain protein [Bryantella formatexigens DSM 14469] Length = 465 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 20/100 (20%) Query: 31 GCNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEG 85 GCN+ D SA C C G + N+ D++ +IE+ G Sbjct: 117 GCNIPWTILLDPTSACNLHCTGC------WAAEYGNKLNLTYDEIDGIIEQGKELGVYLY 170 Query: 86 RYCVLTGGEPLLQVDVPLIQALNKRG---FEIAVETNGTI 122 + TGGEPL++ LI+ K F TNGT+ Sbjct: 171 ---IYTGGEPLVRKKD-LIRLCEKHSDCVFLCF--TNGTL 204 >gi|254415468|ref|ZP_05029228.1| hypothetical protein MC7420_4926 [Microcoleus chthonoplastes PCC 7420] gi|196177649|gb|EDX72653.1| hypothetical protein MC7420_4926 [Microcoleus chthonoplastes PCC 7420] Length = 206 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 29/96 (30%), Gaps = 20/96 (20%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 G AV GCN +C C + VD+LAD I Sbjct: 32 GCRAV-VWVQGCN-----------RECASC-FNPASWSFEINQLIAVDELADKI-----L 73 Query: 81 GEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114 + +GGEP Q L + L G + Sbjct: 74 SNPHNQGVTFSGGEPFWQAPALAQLAKKLKAAGLNV 109 >gi|330508288|ref|YP_004384716.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6] gi|328929096|gb|AEB68898.1| radical SAM domain protein [Methanosaeta concilii GP-6] Length = 389 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 21/69 (30%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GC ++C +C R ++ + +++E + Sbjct: 20 GCP-----------SKCSYC-----WSSEVGSPRMTIETVGEIVE---WLRDFRDDPVTF 60 Query: 91 T--GGEPLL 97 T GGEPLL Sbjct: 61 TFHGGEPLL 69 >gi|303241655|ref|ZP_07328153.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] gi|302590770|gb|EFL60520.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] Length = 425 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 15/103 (14%) Query: 31 GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G C C KG +D++ ++++ Sbjct: 46 GCPFDCGVCPQHDQHACIGLIEVTAKCNLHC--PLCYADAGKGHFLGLDKIENMMDFFQE 103 Query: 80 TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFE-IAVETNG 120 + + ++GGEP L ++ +I+ + F+ + + TNG Sbjct: 104 SEGGQAEILQISGGEPTLHPEITEIIKLAKTKKFKYVMLNTNG 146 >gi|303245805|ref|ZP_07332088.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ] gi|302493068|gb|EFL52933.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ] Length = 395 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + D + V GT+ + +D LA + + Sbjct: 50 CNLKCVHCYAKAV------DPEGVDDIGTEEAKAMIDDLAA----------YGAPVMLFS 93 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPL++ D+ L RG + TNGT+ Sbjct: 94 GGEPLVRKDLTELASHATSRGMRAVISTNGTL 125 >gi|257064192|ref|YP_003143864.1| pyruvate-formate lyase-activating enzyme [Slackia heliotrinireducens DSM 20476] gi|256791845|gb|ACV22515.1| pyruvate-formate lyase-activating enzyme [Slackia heliotrinireducens DSM 20476] Length = 201 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 S +C C + + + R + DQLA+ + + R TGG+PL Q D Sbjct: 27 SKRCPGCANPELW-EASDANRIDNDQLAEALVR--MAKASGTRAITFTGGDPLEQPD 80 >gi|228986690|ref|ZP_04146820.1| Anaerobic ribonucleoside-triphosphate reductase activating protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773021|gb|EEM21457.1| Anaerobic ribonucleoside-triphosphate reductase activating protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 147 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 25/86 (29%) Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDTDFVGIQGTKGGRYNVDQLADL 73 GEG VF F+GC + S C G V+++ + Sbjct: 11 GEGLRT---VVF--FAGCPHRCFGCHNPKSWNIC-------------NGIEMTVEEIVEE 52 Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQV 99 I +GG+P LQ Sbjct: 53 I------ASNPLTDVTFSGGDPFLQA 72 >gi|229074347|ref|ZP_04207385.1| dehydrogenase [Bacillus cereus Rock4-18] gi|229095122|ref|ZP_04226117.1| dehydrogenase [Bacillus cereus Rock3-29] gi|229101224|ref|ZP_04231988.1| dehydrogenase [Bacillus cereus Rock3-28] gi|228682192|gb|EEL36305.1| dehydrogenase [Bacillus cereus Rock3-28] gi|228688307|gb|EEL42190.1| dehydrogenase [Bacillus cereus Rock3-29] gi|228708789|gb|EEL60924.1| dehydrogenase [Bacillus cereus Rock4-18] Length = 375 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q ++ L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMELLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|168217217|ref|ZP_02642842.1| 4Fe-4S binding domain protein/radical SAM domain protein [Clostridium perfringens NCTC 8239] gi|182380702|gb|EDT78181.1| 4Fe-4S binding domain protein/radical SAM domain protein [Clostridium perfringens NCTC 8239] Length = 273 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 53/164 (32%), Gaps = 45/164 (27%) Query: 25 VFCRFSGCNLWS------------------------------GREQDRLSAQCRFCDTDF 54 +F F GCN + +C CD Sbjct: 22 IF--FQGCNFKCLYCHNPETINKCISCGKCVENCEVGALSISDGKVIWDEEECISCDKCI 79 Query: 55 VGIQ---GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNK 109 + K Y+V++L IE+ R ++GGE L + L + + K Sbjct: 80 KLCEHMSSPKTKEYSVEELVKKIEK----DSFFIRGITVSGGECTLNSEFLIKLFREVKK 135 Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153 G V+TNG + + I ++ K D+K E + ++ Sbjct: 136 LGLTCFVDTNGNTKLDDEL--INLTDKFMLDVK--SIDEKENIW 175 >gi|167628201|ref|YP_001678700.1| molybdenum cofactor biosynthesis protein a [Heliobacterium modesticaldum Ice1] gi|226704819|sp|B0TI16|MOAA_HELMI RecName: Full=Molybdenum cofactor biosynthesis protein A gi|167590941|gb|ABZ82689.1| molybdenum cofactor biosynthesis protein a [Heliobacterium modesticaldum Ice1] Length = 327 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 15/105 (14%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C G+ ++ LI I + R +TGGEPL++ Sbjct: 18 DRCNLRCIYC-MPEAGLPLVDHREVLRFEEFERLIA---IAASQGIRRVRITGGEPLVRK 73 Query: 100 DV-PLIQALNKR-GFE-IAVETNGTIEP-------PQGIDWICVS 134 + P + + G E +A+ TNG + P G+D + +S Sbjct: 74 GIVPFVARVKTMTGIEDVALTTNGLLLPRFASELKAAGLDRVNIS 118 >gi|157364072|ref|YP_001470839.1| radical SAM domain-containing protein [Thermotoga lettingae TMO] gi|157314676|gb|ABV33775.1| Radical SAM domain protein [Thermotoga lettingae TMO] Length = 432 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 20/119 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL QC C + N + + +I+ + + Sbjct: 77 CNL-----------QCIHC--FYESKPDENYQMLNKEYIPLIID---LINRYNIENVTIG 120 Query: 92 GGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL + L + L K +I + TNG + I+ I +P+ + + E Sbjct: 121 GGEPLTWPHLRNLLTEILEKTNAKIFLLTNGLL--LDKIEDILTTPRFNVQISLDAVHE 177 >gi|150020405|ref|YP_001305759.1| radical SAM domain-containing protein [Thermosipho melanesiensis BI429] gi|149792926|gb|ABR30374.1| Radical SAM domain protein [Thermosipho melanesiensis BI429] Length = 332 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 15/93 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN C + T + K ++ ++L I ++ K G + LT Sbjct: 40 CNAKC--------PACPY--TISTIREKYKNAQFVSEKLFKKIADEC---GKYGAFIRLT 86 Query: 92 GG-EPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GG EP+L ++ LI+ G +I + TNG++ Sbjct: 87 GGGEPMLHPNIVELIEYAKSVGAKIGLITNGSM 119 >gi|46578994|ref|YP_009802.1| molybdenum cofactor biosynthesis protein A [Desulfovibrio vulgaris str. Hildenborough] gi|120603415|ref|YP_967815.1| molybdenum cofactor biosynthesis protein A [Desulfovibrio vulgaris DP4] gi|46448407|gb|AAS95061.1| molybdenum cofactor biosynthesis protein A [Desulfovibrio vulgaris str. Hildenborough] gi|120563644|gb|ABM29388.1| GTP cyclohydrolase subunit MoaA [Desulfovibrio vulgaris DP4] gi|311232845|gb|ADP85699.1| molybdenum cofactor biosynthesis protein A [Desulfovibrio vulgaris RCH1] Length = 341 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 12/88 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLL 97 DR + +C +C G D + ++ + E LTGGEPL+ Sbjct: 29 DRCNLRCLYC------WGGGGMRFIPHDDILRYEEMARLVDVAVESGVEKVRLTGGEPLV 82 Query: 98 QVDVPLIQALNKRGFE---IAVETNGTI 122 + +V + L ++ + + TNGT+ Sbjct: 83 RKNVLHLVELVRKKHPAIDLRITTNGTL 110 >gi|15607116|ref|NP_214498.1| molybdenum cofactor biosynthesis protein A [Aquifex aeolicus VF5] gi|7674126|sp|O67929|MOAA_AQUAE RecName: Full=Molybdenum cofactor biosynthesis protein A gi|2984358|gb|AAC07877.1| molybdenum cofactor biosynthesis protein A [Aquifex aeolicus VF5] Length = 320 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 23/92 (25%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY---------NVDQLADLIEEQWITGEKEGRYCVLT 91 DR + +C FC G Y +++ + ++ G ++ R LT Sbjct: 19 DRCNLRCNFC--------MPPGKEYNFLPKRQLLTPEEIEEYVKIFAKLGVEKVR---LT 67 Query: 92 GGEPLLQVDV-PLIQALNK-RGFE-IAVETNG 120 GGEPLL+ D+ +IQ ++K G + IA+ TNG Sbjct: 68 GGEPLLREDLEEIIQRISKVEGIKDIALTTNG 99 >gi|238025522|ref|YP_002909754.1| hypothetical protein bglu_2g22180 [Burkholderia glumae BGR1] gi|237880187|gb|ACR32519.1| Hypothetical protein bglu_2g22180 [Burkholderia glumae BGR1] Length = 386 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 22/116 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R +V++ ++E + Sbjct: 38 CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 GGEPLL D+P +++ + KR + + TN + + +D SP + + G Sbjct: 79 AGGEPLLHRDMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYQPSPYFVWSVHLDG 133 >gi|258516114|ref|YP_003192336.1| molybdenum cofactor biosynthesis protein A [Desulfotomaculum acetoxidans DSM 771] gi|257779819|gb|ACV63713.1| molybdenum cofactor biosynthesis protein A [Desulfotomaculum acetoxidans DSM 771] Length = 325 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 5/71 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLT 91 N DR + +C +C + G R+ ++ L ++ + + R T Sbjct: 10 NYLRVSVTDRCNLRCVYC----MPAGGVAAARHEDILTLEEIEQVIRAAADVGVRKIRFT 65 Query: 92 GGEPLLQVDVP 102 GGEPL++ +P Sbjct: 66 GGEPLVRKGLP 76 >gi|229083725|ref|ZP_04216046.1| dehydrogenase [Bacillus cereus Rock3-44] gi|228699583|gb|EEL52247.1| dehydrogenase [Bacillus cereus Rock3-44] Length = 375 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q ++ L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMELLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|165870242|ref|ZP_02214898.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0488] gi|190567834|ref|ZP_03020745.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis Tsiankovskii-I] gi|227815047|ref|YP_002815056.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. CDC 684] gi|164714130|gb|EDR19651.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0488] gi|190560889|gb|EDV14863.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis Tsiankovskii-I] gi|227004872|gb|ACP14615.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. CDC 684] Length = 306 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-R 110 D+ +Q D++ L G + R LTGGEPLL+ D+P LI L K Sbjct: 9 DYAFLQEEC--LLTFDEIERLARLFISMGVNKIR---LTGGEPLLRKDLPKLIARLAKLE 63 Query: 111 GFE-IAVETNG 120 G + I + TNG Sbjct: 64 GLKDIGLTTNG 74 >gi|116628106|ref|YP_820725.1| radical SAM superfamily protein [Streptococcus thermophilus LMD-9] gi|116101383|gb|ABJ66529.1| Radical SAM superfamily enzyme [Streptococcus thermophilus LMD-9] gi|312278703|gb|ADQ63360.1| Radical SAM superfamily enzyme [Streptococcus thermophilus ND03] Length = 439 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 26/163 (15%) Query: 49 FCDTD--FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQ 105 +CD F + + + + I Q + + GGEP D+ L+ Sbjct: 116 YCDLKCGFCFLANREDRNAKPAKDWERILRQ--AKDNGVLSVSILGGEPTRYFDIDNLLI 173 Query: 106 ALNKRGFEIAVETNG------TIEPPQGIDWIC-------VSPKAGCDLKIKGGQELKLV 152 A + + + TN T+E +I + PK EL V Sbjct: 174 ACEELKIKTTITTNAQLIKKSTVEILAKSKYITPVLSLQTLDPKLNF--------ELMGV 225 Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 P + Y ++ + + E + +C +N Sbjct: 226 RPDRQIKLAKYFKEVGKKCRINAVYTKQSYEQIIELVDFCIEN 268 >gi|83590234|ref|YP_430243.1| radical SAM family protein [Moorella thermoacetica ATCC 39073] gi|83573148|gb|ABC19700.1| Radical SAM [Moorella thermoacetica ATCC 39073] Length = 441 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 17/85 (20%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQW 78 G + F C+ C FC F +G + +N +E Sbjct: 89 VGSLTFFISLQ-CH-----------RHCFFC---FNPNQEGYEYYTHNQRDCLAELEYLQ 133 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPL 103 TG+ E ++ LTGGEPLL + L Sbjct: 134 RTGQ-EMKHVALTGGEPLLHPEETL 157 >gi|73662225|ref|YP_301006.1| hypothetical protein SSP0916 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494740|dbj|BAE18061.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 379 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 12/91 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q T +D + ++E + + +TGGEP+ Sbjct: 48 RCSHCAVGYT-LQTTDPDPLPMDLIYRRLDEI-----PDLKTMSITGGEPMFSKKSIRNV 101 Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130 PL++ + RG + + +N T+ + +D Sbjct: 102 VKPLLKYAHSRGIYVQMNSNLTLPLDRYLDI 132 >gi|313893341|ref|ZP_07826915.1| six-Cys-in-45 modification radical SAM protein [Veillonella sp. oral taxon 158 str. F0412] gi|313442110|gb|EFR60528.1| six-Cys-in-45 modification radical SAM protein [Veillonella sp. oral taxon 158 str. F0412] Length = 469 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 26/112 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ--LADLIEEQWITGEKEGRYCV 89 CNL C++C F G + + +A + I ++C Sbjct: 107 CNL-----------ACKYC---FASQGDYGGVKRELMSFDVAKRAVDFLIKMSGPRQHCE 152 Query: 90 LT--GGEPLLQVD--------VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 + GGEPLL D + IQ + + F++ + TNG + ID++ Sbjct: 153 IDFFGGEPLLNWDVVKQTVEYIESIQEQHNKIFKLTLTTNGMLLTQDKIDYV 204 >gi|257456253|ref|ZP_05621450.1| radical SAM domain protein [Treponema vincentii ATCC 35580] gi|257446339|gb|EEV21385.1| radical SAM domain protein [Treponema vincentii ATCC 35580] Length = 461 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 24/96 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD-------QLADLIEEQWITGEKE 84 CNL CRFC T + + + G+ + + D+I K Sbjct: 94 CNLC-----------CRFCFTGYELKK--QYGQLTIQNIHAIFSAIDDIISIHNSYFYKG 140 Query: 85 GRYCVLTGGEPLLQVDVPLIQ----ALNKRGFEIAV 116 + GGEPLL+ + L+ L R + + Sbjct: 141 LPTISIFGGEPLLRSNKYLLDEVFKLLKYRNLRVEI 176 >gi|283955608|ref|ZP_06373101.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni subsp. jejuni 1336] gi|283792833|gb|EFC31609.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni subsp. jejuni 1336] Length = 320 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 6/91 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N R + +C +C K + ++L I+ G ++ R +TG Sbjct: 11 NYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLSFEELFLFIKAAIDEGIEKIR---ITG 67 Query: 93 GEPLLQVDVP-LIQALNK--RGFEIAVETNG 120 GEPLL+ D+ I+ ++ ++A+ TNG Sbjct: 68 GEPLLRKDLSIFIKMISDYKSDIDLAITTNG 98 >gi|312199707|ref|YP_004019768.1| hopanoid biosynthesis associated radical SAM protein HpnH [Frankia sp. EuI1c] gi|311231043|gb|ADP83898.1| hopanoid biosynthesis associated radical SAM protein HpnH [Frankia sp. EuI1c] Length = 333 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 20/115 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R +V+ +EE + Sbjct: 38 CNLSCTGCGKIQHPA------------NVLKQRMSVEDALAAVEECG------APVVAIA 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 GGEPL+ + ++ L KR + + +NG + + + SP L + G Sbjct: 80 GGEPLMHPQIHEIVNELTKRKKFVILCSNG-LLLRKKLKNFTPSPYFTFMLHVDG 133 >gi|170750295|ref|YP_001756555.1| molybdenum cofactor biosynthesis protein A [Methylobacterium radiotolerans JCM 2831] gi|170656817|gb|ACB25872.1| molybdenum cofactor biosynthesis protein A [Methylobacterium radiotolerans JCM 2831] Length = 350 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 26/167 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C ++ + K +++L L G ++ R +TGGEPL++ D Sbjct: 40 DRCDLRCAYCMSEHMEFL-PKRDLLTLEELDRLCGVFIARGVRKLR---ITGGEPLVRRD 95 Query: 101 V-PLIQAL---NKRGFEIAVE-----TNGTI-------EPPQGIDWICVSPKAGCDLK-- 142 + L + L G A+E TNGT G+ I VS K Sbjct: 96 IMHLFRRLSRHLDSG---ALEELTLTTNGTQLTRYADELASLGVRRINVSLDTLDPDKFR 152 Query: 143 -IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 I +LK+V + + + +L+ ++ + + A Sbjct: 153 EITRRGDLKVVLDGIAAARAAGMKVKINAVALRDVNADEIPDMIAWA 199 >gi|89893163|ref|YP_516650.1| pyruvate-formate lyase-activating enzyme [Desulfitobacterium hafniense Y51] gi|89332611|dbj|BAE82206.1| pyruvate-formate lyase-activating enzyme [Desulfitobacterium hafniense Y51] Length = 310 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 20/152 (13%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 G V+ + +E+ + + G +GGEPL+Q + ++ +R + +ET Sbjct: 117 GKPITVEDVLKEVEKDSVFYARSGGGLTFSGGEPLMQGNFVAETLKEARRRRLKTTIETC 176 Query: 120 G-----TIEPPQG------IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168 G T+E +D C+ P+ + EL + N E++ Sbjct: 177 GYADWSTMERVCQHLTSLIMDIKCMDPEKHQEY-TGASNEL--ILDNFNKLCEHFPKL-- 231 Query: 169 ERFSLQPMDGPF--LEENTNLAISYCFQNPKW 198 + P+ F EE+ + P Sbjct: 232 PKLIRTPVVPGFNDREEDIREIAEFVKDKPNV 263 >gi|27378863|ref|NP_770392.1| molybdenum cofactor biosynthesis protein A [Bradyrhizobium japonicum USDA 110] gi|81737737|sp|Q89NT2|MOAA_BRAJA RecName: Full=Molybdenum cofactor biosynthesis protein A gi|27352012|dbj|BAC49017.1| molybdenum cofactor biosynthesis protein A [Bradyrhizobium japonicum USDA 110] Length = 344 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 30/154 (19%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ K +++L L G K+ R LTGGEPL+ Sbjct: 33 DRCDLRCFYCMSEDMTFL----PKADLLTLEELDRLCSAFIAKGVKKLR---LTGGEPLV 85 Query: 98 QVDV-PLIQALNKR---GF--EIAVETNGTIEPPQG------------IDWICVSPKAGC 139 + +V L+++L++ G E+ + TNGT + + PK Sbjct: 86 RRNVMTLVRSLSRHLSSGALSELTLTTNGTQLAKYARELADCGVRRINVSLDTLDPKKFR 145 Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173 + I E+ V + + + +L Sbjct: 146 E--ITRWGEIDKVLEGIEAARAAGLAVKINAVAL 177 >gi|150391787|ref|YP_001321836.1| molybdenum cofactor biosynthesis protein A [Alkaliphilus metalliredigens QYMF] gi|167011809|sp|A6TVF9|MOAA_ALKMQ RecName: Full=Molybdenum cofactor biosynthesis protein A gi|149951649|gb|ABR50177.1| molybdenum cofactor biosynthesis protein A [Alkaliphilus metalliredigens QYMF] Length = 320 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N D + +C++C + + T ++++ ++ I E +TG Sbjct: 10 NYMRISITDLCNLRCQYCMPEKGIYKKTHQDILTLEEIEQIV---RIGAENGINKVRITG 66 Query: 93 GEPL 96 GEPL Sbjct: 67 GEPL 70 >gi|261342372|ref|ZP_05970230.1| putative oxygen-independent coproporphyrinogen III oxidase [Enterobacter cancerogenus ATCC 35316] gi|288315007|gb|EFC53945.1| putative oxygen-independent coproporphyrinogen III oxidase [Enterobacter cancerogenus ATCC 35316] Length = 380 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y LADL + +E + + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVAHLLADLDADVPYAQGREVKTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L EI +E N GT+E + +D+ Sbjct: 66 GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFVDY 113 >gi|225848259|ref|YP_002728422.1| molybdenum cofactor biosynthesis protein A [Sulfurihydrogenibium azorense Az-Fu1] gi|225643519|gb|ACN98569.1| molybdenum cofactor biosynthesis protein A [Sulfurihydrogenibium azorense Az-Fu1] Length = 321 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 19/89 (21%) Query: 41 DRLSAQCRFC--D-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 D+ + +C +C D +F+ +++A L++ G K+ R +TGGEPL+ Sbjct: 12 DKCNLKCFYCRPDNMEFI----PHDEILRYEEIAKLVKAMTKYGLKKVR---ITGGEPLV 64 Query: 98 QVDVP-LIQALNKRGFEIAVE-----TNG 120 + + L+ L +E TNG Sbjct: 65 RPQIENLVSLLKSIP---QIEDIGMTTNG 90 >gi|68250276|ref|YP_249388.1| molybdenum cofactor biosynthesis protein A [Haemophilus influenzae 86-028NP] gi|81335303|sp|Q4QJR9|MOAA_HAEI8 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|68058475|gb|AAX88728.1| molybdenum cofactor biosynthesis protein A [Haemophilus influenzae 86-028NP] Length = 337 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 49/138 (35%), Gaps = 24/138 (17%) Query: 41 DRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D+ + +C +C G + + + L ++I E LTGGEP L+ Sbjct: 31 DQCNFRCTYC-----LPDGYQPEANKPSFLTLKEIIHLAQAFAEMGTEKIRLTGGEPTLR 85 Query: 99 VDVPLIQALNKR--GFE-IAVETNGTIEPPQGIDW-------ICVS-----PKAGCDLKI 143 D I G +AV TNG DW I VS PK +I Sbjct: 86 KDFISIAESIANIDGIRQLAVTTNGYRMAKDVADWKQAGITSINVSVDSLDPK--MFHQI 143 Query: 144 KGGQELKLVFPQVNVSPE 161 G + V ++ + E Sbjct: 144 TGINKFDDVMRGIDRAFE 161 >gi|307691071|ref|ZP_07633517.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] Length = 463 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 18/91 (19%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCN+ +C+ C + + ++ DL + G +Y L Sbjct: 18 GCNM-----------RCKHCGS---ICENPLPDELTTEEALDLCRQLGELGM---QYITL 60 Query: 91 TGGEPLLQVDVPLI-QALNKRGFEIAVETNG 120 +GGEP + D LI + L K G + TNG Sbjct: 61 SGGEPTTRKDWHLIAKELTKNGVIPNIITNG 91 >gi|291327220|ref|ZP_06127407.2| radical SAM enzyme, Cfr family [Providencia rettgeri DSM 1131] gi|291311232|gb|EFE51685.1| radical SAM enzyme, Cfr family [Providencia rettgeri DSM 1131] Length = 426 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I +G + V+ G Sbjct: 160 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRPITNVVMMG 219 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL ++ VP ++ L+ GF + + T+G + + D I V Sbjct: 220 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDV 270 >gi|212710618|ref|ZP_03318746.1| hypothetical protein PROVALCAL_01684 [Providencia alcalifaciens DSM 30120] gi|212686699|gb|EEB46227.1| hypothetical protein PROVALCAL_01684 [Providencia alcalifaciens DSM 30120] Length = 399 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I +G + V+ G Sbjct: 133 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRPITNVVMMG 192 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL ++ VP ++ L+ GF + + T+G + + D I V Sbjct: 193 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDV 243 >gi|145633351|ref|ZP_01789082.1| molybdenum cofactor biosynthesis protein A [Haemophilus influenzae 3655] gi|144986197|gb|EDJ92787.1| molybdenum cofactor biosynthesis protein A [Haemophilus influenzae 3655] Length = 337 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 49/138 (35%), Gaps = 24/138 (17%) Query: 41 DRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D+ + +C +C G + + + L ++I E LTGGEP L+ Sbjct: 31 DQCNFRCTYC-----LPDGYQPEANKPSFLTLKEIIHLAQAFAEMGTEKIRLTGGEPTLR 85 Query: 99 VDVPLIQALNKR--GFE-IAVETNGTIEPPQGIDW-------ICVS-----PKAGCDLKI 143 D I G +AV TNG DW I VS PK +I Sbjct: 86 KDFISIAESIANIDGIRQLAVTTNGYRMAKDVADWKQAGITSINVSVDSLDPK--MFHQI 143 Query: 144 KGGQELKLVFPQVNVSPE 161 G + V ++ + E Sbjct: 144 TGINKFDDVMRGIDRAFE 161 >gi|66811420|ref|XP_639890.1| molybdenum cofactor synthesis 1 [Dictyostelium discoideum AX4] gi|74853957|sp|Q54NM6|MOCS1_DICDI RecName: Full=Molybdenum cofactor biosynthesis protein 1; Includes: RecName: Full=Molybdenum cofactor biosynthesis protein A; Includes: RecName: Full=Molybdenum cofactor biosynthesis protein C gi|60466835|gb|EAL64881.1| molybdenum cofactor synthesis 1 [Dictyostelium discoideum AX4] Length = 630 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 21/113 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + + D++ L + G + R+ T Sbjct: 77 CNL-----------RCKYCMPEEGVMLSQADKILTTDEIIRLSKLFVSAGVNKIRF---T 122 Query: 92 GGEPLLQVDV-PLIQALNK-RGFE-IAVETNGTIEPPQGIDWICVSPKAGCDL 141 GGEPL++ DV PLI+ + K +G + I + TNG I + +D + KAG +L Sbjct: 123 GGEPLVRKDVEPLIEEVGKIKGLQKIGITTNG-ILLSRKLDRLH---KAGVNL 171 >gi|325288756|ref|YP_004264937.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964157|gb|ADY54936.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 341 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 16/101 (15%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVD---------QLADLIEEQWITGEKEGRYCVLTG 92 R + +C +C +G GG+ + + +L I + + + + +G Sbjct: 35 RCNFKCFYC---MHATRGVAGGQLDREGFRIENMSGELYTKIIKDIMAFPQPPKRIAFSG 91 Query: 93 -GEPLLQVDVP-LIQALNKRGF--EIAVETNGTIEPPQGID 129 GEPL+ D+P +I+ L GF I V TNG + P+ D Sbjct: 92 LGEPLMNKDLPNMIKELRDAGFTGRIDVLTNGVLLTPKMAD 132 >gi|229056258|ref|ZP_04195679.1| dehydrogenase [Bacillus cereus AH603] gi|229165420|ref|ZP_04293204.1| dehydrogenase [Bacillus cereus AH621] gi|228618018|gb|EEK75059.1| dehydrogenase [Bacillus cereus AH621] gi|228721063|gb|EEL72601.1| dehydrogenase [Bacillus cereus AH603] Length = 369 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q ++ L ++E R +TGGEP+L Sbjct: 39 RCEHCAVGYT-LQPKDPNPLPMELLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 92 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 93 VTPLLKYAHERGVRTQINSNLTIDL 117 >gi|205356587|ref|ZP_03223350.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni subsp. jejuni CG8421] gi|205345592|gb|EDZ32232.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni subsp. jejuni CG8421] Length = 320 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 6/91 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N R + +C +C K + ++L ++ G ++ R +TG Sbjct: 11 NYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLSFEELFLFVKAAIDEGIEKIR---ITG 67 Query: 93 GEPLLQVDVP-LIQALNK--RGFEIAVETNG 120 GEPLL+ D+ I+ +N ++A+ TNG Sbjct: 68 GEPLLRKDLSIFIKMINDYKSDIDLAITTNG 98 >gi|114565072|ref|YP_752586.1| molybdenum cofactor biosynthesis protein A [Shewanella frigidimarina NCIMB 400] gi|114336365|gb|ABI73747.1| molybdenum cofactor biosynthesis protein A [Shewanella frigidimarina NCIMB 400] Length = 328 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 13/87 (14%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C + T + +V L +L E + LTGGEPL++ D Sbjct: 21 DRCDFRCVYC----MSEDPTFLPKSHVLSLEELSWIAQAFTELGVKKIRLTGGEPLVRSD 76 Query: 101 -VPLIQALNKRGFEIAVE-----TNGT 121 L++ L K +E TNG+ Sbjct: 77 CDKLVKLLRKLP---QLEELSMTTNGS 100 >gi|327310414|ref|YP_004337311.1| Radical SAM domain-containing protein [Thermoproteus uzoniensis 768-20] gi|326946893|gb|AEA11999.1| Radical SAM domain protein [Thermoproteus uzoniensis 768-20] Length = 574 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 18/104 (17%) Query: 31 GCNLWSGREQD----------RLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWI 79 GC L + D R + C C F ++Q+ ++ Sbjct: 135 GCGLCPVHKSDTVLAIIDVTNRCNMACPVC---FANAGAAGYVYEPTLEQIEYMLRTLRA 191 Query: 80 TGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGFEIAVE--TNG 120 L+GGEP L+ D+P I + K GF +E TNG Sbjct: 192 QRPWPPNALQLSGGEPTLRDDLPEIVRMAKKLGFT-HIEVNTNG 234 >gi|229115649|ref|ZP_04245054.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock1-3] gi|228667791|gb|EEL23228.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock1-3] Length = 306 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 6/58 (10%) Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 D++ L G + R LTGGEPLL+ D+P LI L K G I + TNG Sbjct: 20 TFDEIERLARLFISMGVNKIR---LTGGEPLLRKDLPKLIARLAKLEGLTDIGLTTNG 74 >gi|171910922|ref|ZP_02926392.1| putative transferase [Verrucomicrobium spinosum DSM 4136] Length = 476 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 5/78 (6%) Query: 50 CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL--TGGEPLLQV-DVPLIQA 106 C T + G + + L ++ +++G +L +GGEP L L Sbjct: 124 CPTCYADSPIGTGMKVDAVPLEEIQARVQGVVDRKGGIEILQLSGGEPTLHPQLFELCAW 183 Query: 107 LNKRGF--EIAVETNGTI 122 L + TNG + Sbjct: 184 LKAHPKIDFTLINTNGVL 201 >gi|168213843|ref|ZP_02639468.1| 4Fe-4S binding domain protein/radical SAM domain protein [Clostridium perfringens CPE str. F4969] gi|170714621|gb|EDT26803.1| 4Fe-4S binding domain protein/radical SAM domain protein [Clostridium perfringens CPE str. F4969] Length = 273 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 53/164 (32%), Gaps = 45/164 (27%) Query: 25 VFCRFSGCNLWS------------------------------GREQDRLSAQCRFCDTDF 54 +F F GCN + +C CD Sbjct: 22 IF--FQGCNFKCLYCHNPETINKCISCGKCVENCEVGALSISDGKVIWDEEECISCDKCI 79 Query: 55 ---VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNK 109 + K Y+V++L IE+ R ++GGE L + L + + K Sbjct: 80 KLCENMSSPKIKEYSVEELVKKIEK----DSFFIRGITVSGGECTLNSEFLIKLFREVKK 135 Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153 G V+TNG + + I ++ K D+K E + ++ Sbjct: 136 LGLTCFVDTNGNTKLDDEL--INLTDKFMLDVK--SIDEKENIW 175 >gi|163938411|ref|YP_001643295.1| YfkB-like domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|229009905|ref|ZP_04167124.1| dehydrogenase [Bacillus mycoides DSM 2048] gi|163860608|gb|ABY41667.1| YfkB-like domain protein [Bacillus weihenstephanensis KBAB4] gi|228751336|gb|EEM01143.1| dehydrogenase [Bacillus mycoides DSM 2048] Length = 375 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q ++ L ++E R +TGGEP+L Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMELLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|303244953|ref|ZP_07331277.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1] gi|302484664|gb|EFL47604.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1] Length = 333 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 70 LADLIEEQWITGEKEGRYCVLT-GGEPLLQV-DVPLIQALNKRGFEIAVETNG 120 + D I E+ ++ ++ GEP + LI+ +K+G V +NG Sbjct: 132 ILDRIGEKKFNEAINPKHVAISLSGEPTIYPYLDELIKLFHKKGLSTFVVSNG 184 >gi|257792306|ref|YP_003182912.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Eggerthella lenta DSM 2243] gi|325833354|ref|ZP_08165803.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Eggerthella sp. HGA1] gi|257476203|gb|ACV56523.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Eggerthella lenta DSM 2243] gi|325485278|gb|EGC87747.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Eggerthella sp. HGA1] Length = 181 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 19/75 (25%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 AVF GC S C C V +AD++ E Sbjct: 26 AVFV--QGC-----------SHGCPGC----HNPDSQPCAGGTVRAIADVVAEIAANKLV 68 Query: 84 EGRYCVLTGGEPLLQ 98 +G ++GGEP Q Sbjct: 69 QG--VTVSGGEPFEQ 81 >gi|255523321|ref|ZP_05390291.1| molybdenum cofactor biosynthesis protein A [Clostridium carboxidivorans P7] gi|255512975|gb|EET89245.1| molybdenum cofactor biosynthesis protein A [Clostridium carboxidivorans P7] Length = 318 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 6/83 (7%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + + +++ +I+ G K+ RY TGGEPL+ + Sbjct: 18 DRCNLRCIYCMPEQGVSKKCHEDVIRFEEVLKIIKSAVPLGIKKIRY---TGGEPLILKN 74 Query: 101 V-PLIQA--LNKRGFEIAVETNG 120 + LI ++ +IA+ TNG Sbjct: 75 ISSLISETSKIQQIKDIAITTNG 97 >gi|302875106|ref|YP_003843739.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|307690269|ref|ZP_07632715.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|302577963|gb|ADL51975.1| Radical SAM domain protein [Clostridium cellulovorans 743B] Length = 363 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 15/92 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL+ R + C + + ++ + + E G + +L Sbjct: 72 CNLFCKGCYARANKSC---------GEDIHKIQLPSERWSGIFNEAKELG---ISFILLA 119 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GGEPL+Q D + + + F I TNGT+ Sbjct: 120 GGEPLMQRDIIEKAAEIKEIMFPIF--TNGTM 149 >gi|148262869|ref|YP_001229575.1| radical SAM domain-containing protein [Geobacter uraniireducens Rf4] gi|146396369|gb|ABQ25002.1| Radical SAM domain protein [Geobacter uraniireducens Rf4] Length = 446 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 22/93 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C V + N+++L +E+ G Sbjct: 141 CNL-----------ACSHC--SRVTTESPGPDELNLEELISFLEQAGRIG---VSTITFM 184 Query: 92 GGEPLLQV---DVPLIQALNKRGFE-IAVETNG 120 GGEP ++ L+ L G I+V TNG Sbjct: 185 GGEPTCHPELIELALVARL--SGIRSISVGTNG 215 >gi|257459147|ref|ZP_05624266.1| molybdenum cofactor biosynthesis protein A [Campylobacter gracilis RM3268] gi|257443532|gb|EEV18656.1| molybdenum cofactor biosynthesis protein A [Campylobacter gracilis RM3268] Length = 321 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 10/84 (11%) Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 R + +CR+C T F + R N+ ++ + + + +TGGEPL++ Sbjct: 20 RCNFRCRYCMPATPFNWV-----PRENILSFEEMFLFVKVAIDGGVKKIRITGGEPLVRK 74 Query: 100 DVP-LIQALNK--RGFEIAVETNG 120 + I+ + G ++A+ TNG Sbjct: 75 GIEDFIKMIADYAPGIDLALTTNG 98 >gi|78484503|ref|YP_390428.1| molybdenum cofactor synthesis-like [Thiomicrospira crunogena XCL-2] gi|123728093|sp|Q31JB9|MOAA_THICR RecName: Full=Molybdenum cofactor biosynthesis protein A gi|78362789|gb|ABB40754.1| GTP cyclohydrolase subunit MoaA [Thiomicrospira crunogena XCL-2] Length = 331 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 7/83 (8%) Query: 41 DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 D+ + +C +C +G + D+LA +I+ G + R +TGGEPL++ Sbjct: 20 DKCNYRCGYCMPEQGAHPEGRHTEYLDYDELARIIKAFVDLGVTKVR---ITGGEPLVRK 76 Query: 100 DVP-LIQALN-KRGF-EIAVETN 119 +P I+ + G EIA+ TN Sbjct: 77 GLPGFIEEIQPYEGLEEIALSTN 99 >gi|302876914|ref|YP_003845547.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|302579771|gb|ADL53783.1| Radical SAM domain protein [Clostridium cellulovorans 743B] Length = 504 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 18/91 (19%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCN+ +C+ C + + ++ DL + G +Y L Sbjct: 15 GCNM-----------RCKHCGS---ICENPLPDELTTEEALDLCRQLGELGM---QYITL 57 Query: 91 TGGEPLLQVDVPLI-QALNKRGFEIAVETNG 120 +GGEP + D LI + L K G + TNG Sbjct: 58 SGGEPTTRKDWHLIAKELTKNGVIPNIITNG 88 >gi|301632243|ref|XP_002945200.1| PREDICTED: ribosomal RNA large subunit methyltransferase N-like [Xenopus (Silurana) tropicalis] Length = 328 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 20/104 (19%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL------IEEQWITGEKEGRYCV 89 Q + CRFC T G QG + LA L + ++ + E+ V Sbjct: 60 CVSSQAGCAVGCRFCST---GHQGFSRNLSTGEILAQLWYAEHHLRQRLGSSERVISNVV 116 Query: 90 LTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123 + G GEPL Q L+ AL G+ + V T+G + Sbjct: 117 MMGMGEPL-QNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVP 159 >gi|241764492|ref|ZP_04762513.1| radical SAM enzyme, Cfr family [Acidovorax delafieldii 2AN] gi|241366076|gb|EER60673.1| radical SAM enzyme, Cfr family [Acidovorax delafieldii 2AN] Length = 373 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 53/171 (30%), Gaps = 22/171 (12%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLAD-LIEEQWITGEKEGRYCVLTG 92 Q + CRFC T G T G A+ + ++ T + V+ G Sbjct: 104 CVSSQAGCAVGCRFCSTGHQGFSRNLTTGEIVAQLWFAEHALRKRLATQSRVISNVVMMG 163 Query: 93 -GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 GEPL Q L+ AL G+ + V T+G + + C P A Sbjct: 164 MGEPL-QNYTALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDC--PVALAVSL 220 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 L+ +N D R L+ F + YC Sbjct: 221 HAPNDALRDNLVPLNRKYPLEELLDACRRYLEHAPRDF------ITFEYCM 265 >gi|209965057|ref|YP_002297972.1| molybdenum cofactor biosynthesis protein A [Rhodospirillum centenum SW] gi|209958523|gb|ACI99159.1| molybdenum cofactor biosynthesis protein A [Rhodospirillum centenum SW] Length = 348 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ K ++++L L G ++ R LTGGEPL+ Sbjct: 32 DRCDFRCVYCMSEDMHFL----PKAEVLSLEELDRLCSAFVRLGTRKLR---LTGGEPLV 84 Query: 98 QVD-VPLIQAL---NKRGF--EIAVETNGT 121 + D + LI++L + G E+ + TNG+ Sbjct: 85 RRDILELIRSLGRHLRTGRLDELTLTTNGS 114 >gi|167756317|ref|ZP_02428444.1| hypothetical protein CLORAM_01850 [Clostridium ramosum DSM 1402] gi|167703725|gb|EDS18304.1| hypothetical protein CLORAM_01850 [Clostridium ramosum DSM 1402] Length = 366 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D+ C C T +++ +L +I + G TGGEPLL+ D Sbjct: 70 DKCMYHCWHCSASKFMKDATSNSQFSTLELKKIIAQLQRLGVA---IIGFTGGEPLLRED 126 Query: 101 V-PLIQALNKR 110 + LI ++++R Sbjct: 127 LEELIASIDER 137 >gi|56410451|ref|YP_145825.1| molybdopterin cofactor biosynthesis protein [Geobacillus kaustophilus HTA426] gi|56378348|dbj|BAD74257.1| molybdopterin cofactor biosynthesis protein (moaA/nifB/pqqE family) [Geobacillus kaustophilus HTA426] Length = 341 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 17/106 (16%) Query: 28 RFSGCNLWSGREQ--DRLSAQCRFCDTDFVGIQGT------KGGRYNVDQLADLIEEQWI 79 R + L R D+ + +C +C + G +G V+++A L E Sbjct: 12 RLAR-PLRDLRLSVTDQCNFRCVYC--MPAEVFGPNFRFLDEGQLLTVEEMALLAECFVE 68 Query: 80 TGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFE-IAVETNGTI 122 G ++ R LTGGEPLL+ D+ LI+ L+ G I + TNG Sbjct: 69 LGVEKIR---LTGGEPLLRRDLDALIERLSAIPGLRDIGLTTNGVH 111 >gi|16081565|ref|NP_393921.1| molybdenum cofactor biosynthesis protein A [Thermoplasma acidophilum DSM 1728] gi|24212010|sp|Q9HKZ7|MOAA_THEAC RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|10639613|emb|CAC11585.1| molybdopterin biosynthesis protein moaA related protein [Thermoplasma acidophilum] Length = 324 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 19/120 (15%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 C FC + G +++ +++ I+ E +TGGEP L+ D+ I Sbjct: 26 CFFC---HMEGTDVNGEELTPEEIERVVK---ISHEFGVNKVKITGGEPTLRADIIDIIG 79 Query: 107 LNKRGFE--IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYI 164 ++ I++ TNGT+ PK DLK G + + + ++I Sbjct: 80 RIRKHITGNISMTTNGTML-----------PKIAKDLKKAGLDRVNISLHSPDDERFHFI 128 >gi|317050296|ref|YP_004111412.1| molybdenum cofactor biosynthesis protein A [Desulfurispirillum indicum S5] gi|316945380|gb|ADU64856.1| molybdenum cofactor biosynthesis protein A [Desulfurispirillum indicum S5] Length = 325 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 16/95 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C TK +++ ++ G + R +T Sbjct: 24 CNLKCFYCVPEDGI-CH----------ATKDQLLTPEEIIRVLNLLHGLGVSKVR---IT 69 Query: 92 GGEPLLQVDV-PLIQALNKRGFE-IAVETNGTIEP 124 GGEPL + + LI+ ++ GF IA+ TNG + P Sbjct: 70 GGEPLARRGIGKLIRQISAIGFSDIAMTTNGVLLP 104 >gi|115372589|ref|ZP_01459896.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1] gi|310823867|ref|YP_003956225.1| radical sam domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|115370310|gb|EAU69238.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1] gi|309396939|gb|ADO74398.1| Radical SAM domain protein [Stigmatella aurantiaca DW4/3-1] Length = 290 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 18/91 (19%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 GCN +C +C V G +QL + +T Sbjct: 14 GGCNY-----------RCTYC----VQKHMPGIGGPTDEQLEAAL--TTLTALPGSWEFK 56 Query: 90 LTGGEPLLQVDVPLI-QALNKRGFEIAVETN 119 ++GGEP L +P + + L G ++++ TN Sbjct: 57 ISGGEPFLLKRLPEVAKRLATAGHKVSLLTN 87 >gi|57168666|ref|ZP_00367798.1| molybdopterin cofactor biosynthesis protein A [Campylobacter coli RM2228] gi|305432705|ref|ZP_07401865.1| molybdenum cofactor biosynthesis protein A [Campylobacter coli JV20] gi|57019947|gb|EAL56627.1| molybdopterin cofactor biosynthesis protein A [Campylobacter coli RM2228] gi|304444214|gb|EFM36867.1| molybdenum cofactor biosynthesis protein A [Campylobacter coli JV20] Length = 320 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 6/91 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N R + +C +C K + ++L ++ G ++ R +TG Sbjct: 11 NYLRISVTQRCNFRCLYCMPKIPFNHQPKENLLSFEELFLFVKVAIDEGIEKIR---ITG 67 Query: 93 GEPLLQVDVP-LIQALNK--RGFEIAVETNG 120 GEPLL+ D+ I+ +N + ++A+ TNG Sbjct: 68 GEPLLRKDLSVFIKMINDYKKDLDLAITTNG 98 >gi|222824419|ref|YP_002575993.1| molybdenum cofactor biosynthesis protein A [Campylobacter lari RM2100] gi|254811538|sp|B9KDV3|MOAA_CAMLR RecName: Full=Molybdenum cofactor biosynthesis protein A gi|222539640|gb|ACM64741.1| molybdenum cofactor biosynthesis protein A [Campylobacter lari RM2100] Length = 322 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 22/148 (14%) Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--- 96 R + +C +C T F K + ++L ++ G K+ R +TGGEPL Sbjct: 20 RCNFRCLYCMPKTPFEW--SAKENLLSFEELFMFVKVCIDEGVKKIR---ITGGEPLVRK 74 Query: 97 -LQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDW-------ICVS---PKAGCDLKIKG 145 L + +I K+ ++A+ TN ++ Q D I +S K K+ Sbjct: 75 DLYKFIAMISE-YKQDIDLALTTNASLLKQQAKDLRQAGLKRINISLDTLKEDVAFKLAQ 133 Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSL 173 LK V ++ + F +L Sbjct: 134 KNILKDVLNGIDEALNLGFNVKFNTVAL 161 >gi|332038032|gb|EGI74480.1| molybdenum cofactor biosynthesis protein A [Pseudoalteromonas haloplanktis ANT/505] Length = 323 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 15/98 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGR----YNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 D + +C +C G +GG +D++++ ++ G ++ R +TGGEP Sbjct: 19 DVCNFKCVYC-----LPDGYQGGHDRGFLTIDEISNTLKAFAHHGIEKVR---ITGGEPT 70 Query: 97 LQVD-VPLIQALNK-RGF-EIAVETNGTIEPPQGIDWI 131 L+ D + +++A G +IA+ TNG DW+ Sbjct: 71 LRKDFIDVVRAAKDVAGIKKIAMTTNGFSLHKNIHDWV 108 >gi|325287700|ref|YP_004263490.1| molybdenum cofactor biosynthesis protein A [Cellulophaga lytica DSM 7489] gi|324323154|gb|ADY30619.1| molybdenum cofactor biosynthesis protein A [Cellulophaga lytica DSM 7489] Length = 327 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 15/113 (13%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLT 91 N DR + +C +C GI K + + +++L L E G + R +T Sbjct: 11 NYLRLAVTDRCNLRCNYC-MPSEGINFAKNNKLFTIEELVKLSEIVVSQGIDKIR---IT 66 Query: 92 GGEPLLQVDVP-LIQALN-KRGF-EIAVETNGTIEPP-------QGIDWICVS 134 GGEP ++ D+ L++ L G +I++ TN T+ P GI I VS Sbjct: 67 GGEPFVRKDLMVLLRKLAVLNGLNDISITTNATLIGPYISELKQLGITNINVS 119 >gi|300245943|gb|ADJ94029.1| putative glycyl-radical enzyme [Clostridia bacterium enrichment culture clone BF] Length = 205 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 3/64 (4%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119 G Y+VD+L + + G +GGEP+ Q L ++ + A+ET+ Sbjct: 3 GKYYSVDELLKIFNRDRQFWGERGG-VTFSGGEPMYQSQFLLQVLEKCKEDYIHTAIETS 61 Query: 120 GTIE 123 I+ Sbjct: 62 AHID 65 >gi|256810179|ref|YP_003127548.1| Radical SAM domain protein [Methanocaldococcus fervens AG86] gi|256793379|gb|ACV24048.1| Radical SAM domain protein [Methanocaldococcus fervens AG86] Length = 501 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 19/106 (17%) Query: 31 GCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 GC G R + C C F + + + E Sbjct: 72 GCPFDCGLCPTHKSPTVLANIDVTNRCNLNCPIC---FANANKSGKVYEPSFEEIKRMME 128 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120 GGEP ++ D+P LI+ GF + + TNG Sbjct: 129 NLRKEIPPTPAIQFAGGEPTVRPDLPELIKLARDMGFLHVQLATNG 174 >gi|154150123|ref|YP_001403741.1| radical SAM domain-containing protein [Candidatus Methanoregula boonei 6A8] gi|153998675|gb|ABS55098.1| Radical SAM domain protein [Methanoregula boonei 6A8] Length = 389 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 28/98 (28%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GC ++C++C +V+ + +++ + Sbjct: 14 GCP-----------SKCKYC-----WSSEEGSPIMSVETVHEIVV---WLQDIPRDRVTF 54 Query: 91 T--GGEPLL-------QVDVPLIQALNKRGFEIAVETN 119 T GGEPLL Q L L + E A++TN Sbjct: 55 TFHGGEPLLAGADFYRQALPLLADGLAQMHPEFAMQTN 92 >gi|149195424|ref|ZP_01872507.1| molybdenum cofactor biosynthesis protein A [Caminibacter mediatlanticus TB-2] gi|149134429|gb|EDM22922.1| molybdenum cofactor biosynthesis protein A [Caminibacter mediatlanticus TB-2] Length = 318 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 10/85 (11%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 R + +C +C +T F +V ++ E + ++ + +TGGEPL++ Sbjct: 19 SRCNFRCMYCMPNTPFEWQPHE-----DVLSYEEMFEFLRLAIDEGVKKIRITGGEPLVR 73 Query: 99 VDVP-LIQALNK--RGFEIAVETNG 120 ++ I+ L+K + ++A+ TNG Sbjct: 74 KELEVFIKMLSKYNKNLDLALTTNG 98 >gi|114321595|ref|YP_743278.1| coproporphyrinogen III oxidase, anaerobic [Alkalilimnicola ehrlichii MLHE-1] gi|114227989|gb|ABI57788.1| coproporphyrinogen III oxidase, anaerobic [Alkalilimnicola ehrlichii MLHE-1] Length = 398 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 21/112 (18%) Query: 33 NLWSGREQDRLSAQCRFCDT------------DFVGIQGTKGGRYNVDQLADLIEEQWIT 80 L +C +CD D + RY L DL Sbjct: 11 PLGVYLHLPWCVQKCPYCDFNSHAPARADRRADASTLPAIPHERYTRAVLTDLASAAGPL 70 Query: 81 GEKEGRYCVLTGGEPLLQVDVP---LIQALNKR-GF----EIAVETN-GTIE 123 + + GG P L L++AL++R G EI +E N GT+E Sbjct: 71 QGRRVETVFIGGGTPSLFPPEAIGGLLEALDRRLGLTGDAEITLEANPGTVE 122 >gi|320087536|emb|CBY97301.1| putative oxidase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 382 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L+DL + +E + + Sbjct: 10 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVKTIFIG 69 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L EI +E N GT+E + ID+ Sbjct: 70 GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 117 >gi|240104125|ref|YP_002960434.1| molybdenum cofactor biosynthesis protein A [Thermococcus gammatolerans EJ3] gi|239911679|gb|ACS34570.1| Molybdenum cofactor biosynthesis protein A (moaA) [Thermococcus gammatolerans EJ3] Length = 308 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 34/167 (20%) Query: 21 GRVAVFCR---FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77 GR R CN +C FC G + +++ ++ Sbjct: 8 GRPVTNLRISLTQECNF-----------RCFFC--HREGQRFLAKNEMTPEEIERIV--- 51 Query: 78 WITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI-------EPPQGID 129 I R LTGGEP ++ D + +++ + ++++ TNG+ G++ Sbjct: 52 RIASRLGIRKVKLTGGEPTVREDILEIVRRIKPYVIDLSMTTNGSRLKELAKPLAKAGLN 111 Query: 130 WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176 + VS LK E+ V+ + G + L P+ Sbjct: 112 RVNVS---LHSLK----PEVYKKITGVDALNDVLEGIEEAVKYLSPV 151 >gi|161506344|ref|YP_001573456.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867691|gb|ABX24314.1| hypothetical protein SARI_04541 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 378 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L+DL + +E + + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVKTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L EI +E N GT+E + ID+ Sbjct: 66 GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113 >gi|86748851|ref|YP_485347.1| radical SAM family protein [Rhodopseudomonas palustris HaA2] gi|86571879|gb|ABD06436.1| Radical SAM [Rhodopseudomonas palustris HaA2] Length = 388 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 22/119 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R + + D EE + Sbjct: 38 CNL-----------ACVGCGKIDY--PDAILDRRMSAQECWDAAEECG------APMVAI 78 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPL+ ++ +++ L R +++ TN + + + SP + + G +E Sbjct: 79 PGGEPLIHREIGEIVRGLVARKKFVSLCTN-ALLLEKKLHLFEPSPYLFFSVHLDGLKE 136 >gi|312962557|ref|ZP_07777047.1| molybdenum cofactor biosynthesis protein A [Pseudomonas fluorescens WH6] gi|311283137|gb|EFQ61728.1| molybdenum cofactor biosynthesis protein A [Pseudomonas fluorescens WH6] Length = 322 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 61/176 (34%), Gaps = 30/176 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN V Q +A LIE I + +T Sbjct: 21 CNYACTYCVPNGKR--------LVAAQDELSAEAMARGVAYLIEAAGIDRLR------IT 66 Query: 92 GGEPLLQVDVP-LIQALNKRGFE-IAVETNGT-------IEPPQGIDWICVS-PKAGCDL 141 GGEPL+ + + A+ + G I++ TNG + GI I VS D Sbjct: 67 GGEPLVSPKLEAFMGAVGQMGLSDISLTTNGQLLARKLPLLVEAGIKRINVSLDTLDADA 126 Query: 142 --KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 I G +L V ++ + I + ++ P+ G L++ L + YC + Sbjct: 127 FRSIARGGDLATVLDGMDQARAAGIKI---KVNMVPLRGQNLDQVMPL-LDYCLER 178 >gi|300717954|ref|YP_003742757.1| putative Fe-S containing enzyme [Erwinia billingiae Eb661] gi|299063790|emb|CAX60910.1| putative Fe-S containing enzyme [Erwinia billingiae Eb661] Length = 389 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I ITG + V+ G Sbjct: 123 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGASKITGTRPITNVVMMG 182 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL ++ VP ++ L+ GF + + T+G + + D I V Sbjct: 183 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 233 >gi|262280818|ref|ZP_06058601.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262257718|gb|EEY76453.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 384 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 14/105 (13%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIE----EQWITGEKEGRY 87 L +C +CD + G L L+ + + + Sbjct: 10 PLSLYIHMPWCVRKCPYCDFNSHAVPDGALSSELEQTYLKALVADFETQLEMAQGRSIHS 69 Query: 88 CVLTGGEPLL-------QVDVPLIQALN-KRGFEIAVETN-GTIE 123 + GG P L + L L + G EI +E N GT+E Sbjct: 70 VFIGGGTPSLISAQGYVWLFAELKSLLKFEDGCEITLEANPGTVE 114 >gi|238898975|ref|YP_002924657.1| coproporphyrinogen III oxidase, O2-independent, SAM and NAD(P)H dependent [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466735|gb|ACQ68509.1| coproporphyrinogen III oxidase, O2-independent, SAM and NAD(P)H dependent [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 376 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 10/108 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGT-KGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + ++G Y LADL + +T + + Sbjct: 6 PLSLYIHIPWCIKKCPYCDFNSHALKGELPHEEYVAHLLADLEADIPLTSGRAIETIFIG 65 Query: 92 GGEPLL---QVDVPLIQALNKR-----GFEIAVETN-GTIEPPQGIDW 130 GG P L Q L+ + R EI +E N G IE + +D+ Sbjct: 66 GGTPSLLSAQAMQQLLHGVKARIDIRKDAEITMEANPGAIEAKRFVDY 113 >gi|115350482|ref|YP_772321.1| radical SAM domain-containing protein [Burkholderia ambifaria AMMD] gi|115280470|gb|ABI85987.1| Radical SAM domain protein [Burkholderia ambifaria AMMD] Length = 358 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 19/104 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C F F + + + E+ G Sbjct: 32 CNLRC--------KGCWF----FENEFDTASHELNDALRFEQRVREEAARGINAPLLI-- 77 Query: 91 TGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP-QGIDWICV 133 GGEP L +D I+ K +++V TNG P +G + I + Sbjct: 78 -GGEPALHLDR--IRMFRKHMPKVSVSTNGLRRIPYEGFEDITI 118 >gi|323488006|ref|ZP_08093259.1| molybdenum cofactor biosynthesis protein A [Planococcus donghaensis MPA1U2] gi|323398274|gb|EGA91067.1| molybdenum cofactor biosynthesis protein A [Planococcus donghaensis MPA1U2] Length = 338 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D D+ + K + +++ L + G K+ R LTGG Sbjct: 23 DRCNFRCSYCMPKEVFGD-DYAFL--PKQELLSFEEIHRLTKVFVAMGVKKIR---LTGG 76 Query: 94 EPLLQVDVP-LIQA-LNKRGFE-IAVETNG 120 EPL++ +P L++ L+ G E I + TNG Sbjct: 77 EPLMRRGLPQLVEKILSVEGVEDIGLTTNG 106 >gi|302531846|ref|ZP_07284188.1| radical SAM domain-containing protein [Streptomyces sp. AA4] gi|302440741|gb|EFL12557.1| radical SAM domain-containing protein [Streptomyces sp. AA4] Length = 301 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 8/77 (10%) Query: 42 RLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99 R CR C + + G +++E G + ++ GGEP L Sbjct: 13 RCQLSCRQC---YAESGPSGTHGSMTRMDWMRVLDEAGALGVETVQFI---GGEPTLYPH 66 Query: 100 DVPLIQALNKRGFEIAV 116 VPL++ GF + V Sbjct: 67 LVPLVEHALDLGFGVEV 83 >gi|302391584|ref|YP_003827404.1| radical SAM domain protein [Acetohalobium arabaticum DSM 5501] gi|302203661|gb|ADL12339.1| Radical SAM domain protein [Acetohalobium arabaticum DSM 5501] Length = 300 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 21/93 (22%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F FS CNL +C +C ++ Q G V++LA+++ G Sbjct: 77 TIF--FSSCNL-----------RCVYC-QNYDISQHQSGDAVTVEELAEIMISLQKRGCH 122 Query: 84 EGRYCVLTGGEP--LLQVDVPLIQALNKRGFEI 114 + P ++ + K+G EI Sbjct: 123 NINFVT-----PSHMIHALLAATLEACKKGLEI 150 >gi|284035784|ref|YP_003385714.1| radical SAM protein [Spirosoma linguale DSM 74] gi|283815077|gb|ADB36915.1| Radical SAM domain protein [Spirosoma linguale DSM 74] Length = 349 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 9/87 (10%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 + +A+C FC + T R + ++ LI+E + G V +GGEP Sbjct: 6 CFLATYQCNAKCDFC-----ECRPTVKDRIELSEMIRLIDEAYALGTVY--VVVFSGGEP 58 Query: 96 LLQVDVPL--IQALNKRGFEIAVETNG 120 L D L IQ +G V TNG Sbjct: 59 TLLKDDLLKAIQHATSKGLLTRVVTNG 85 >gi|168463709|ref|ZP_02697626.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633771|gb|EDX52185.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 378 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 10/108 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L+DL + +E + + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVKTIFIG 65 Query: 92 GGEPLLQ---VDVPLIQALNKR-----GFEIAVETN-GTIEPPQGIDW 130 GG P L L+ ++ R EI +E N GT+E + ID+ Sbjct: 66 GGTPSLLSGPAMQTLLDGVHARLNLAADAEITMEANPGTVEADRFIDY 113 >gi|168236172|ref|ZP_02661230.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737657|ref|YP_002116052.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713159|gb|ACF92380.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290675|gb|EDY30029.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 378 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L+DL + +E + + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVKTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L EI +E N GT+E + ID+ Sbjct: 66 GGTPSL-LSGPAMQMLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113 >gi|188582897|ref|YP_001926342.1| hopanoid biosynthesis associated radical SAM protein HpnH [Methylobacterium populi BJ001] gi|179346395|gb|ACB81807.1| hopanoid biosynthesis associated radical SAM protein HpnH [Methylobacterium populi BJ001] Length = 387 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 20/119 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C R VD+ + + E V+ Sbjct: 38 CNLAC--------AGCG----KIDYPDEILNKRLPVDEALESVRECG------APVVVIA 79 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEPLL D+P ++Q + + V TN + + I SP + + G +E+ Sbjct: 80 GGEPLLHKDLPQIVQGIIAQKKFAIVCTN-ALLLEKKIKDYKPSPYFTWSIHLDGDKEM 137 >gi|148264555|ref|YP_001231261.1| TatD family hydrolase [Geobacter uraniireducens Rf4] gi|146398055|gb|ABQ26688.1| hydrolase, TatD family [Geobacter uraniireducens Rf4] Length = 462 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 53/165 (32%), Gaps = 39/165 (23%) Query: 41 DRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEP 95 +R S +C FC D G + ++ I E V G GEP Sbjct: 283 NRCSNRCSFCAKFEDFTVKGHYLLLDHEPDFSEVMAAIAAHKGYDE-----VVFCGYGEP 337 Query: 96 LLQVDV--PLIQALNKRGFEIAVETNGTI----------EPPQGIDWICVS--------- 134 LL++D+ + AL K+G I + T+G E ID + VS Sbjct: 338 LLRLDLIKEVAAALKKQGMRIRINTDGQANLVYGRNILPELAGLIDTVSVSLNAADEDTY 397 Query: 135 --------PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171 K G +E K PQV S G D Sbjct: 398 DLLCNTPFSKDGFTGVCTFLREAKQYIPQVIASAVTVPGLDIAEV 442 >gi|126465572|ref|YP_001040681.1| radical SAM domain-containing protein [Staphylothermus marinus F1] gi|126014395|gb|ABN69773.1| Radical SAM domain protein [Staphylothermus marinus F1] Length = 374 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 15/163 (9%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQV 99 R + C +C I G + D +I+E G + +G GEPL+ Sbjct: 32 TRCNYDCIYC--FRRTIVGEGFHDMDRDLFYKIIDEAVEIGVSK---ISFSGWGEPLIHP 86 Query: 100 DVPLIQAL---NKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156 + I L +G EI + TNG + +D+I + G D I + ++ Sbjct: 87 YI--IDFLYYAKSKGLEILLNTNG-YFLIKYVDYIA---RIGVDDIIVSIDAAEDDVYKL 140 Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199 + L+ M + I + +R Sbjct: 141 IRRGGDLARVIEALLILKDMKIKKNMFYPRVNIQFTINRYNYR 183 >gi|94968044|ref|YP_590092.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis Ellin345] gi|94550094|gb|ABF40018.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis Ellin345] Length = 366 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 19/90 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C +Q + ++E + Sbjct: 38 CNLAC--------AGCG----KIQYPGHILKKELTPEQCFNAVDECG------APMVSIP 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 GGEPL+ + +++ L R I + TNG Sbjct: 80 GGEPLMHPQIVEIVEGLLARKKYIYLCTNG 109 >gi|16761879|ref|NP_457496.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143366|ref|NP_806708.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415042|ref|YP_152117.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363971|ref|YP_002143608.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|213051776|ref|ZP_03344654.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213580617|ref|ZP_03362443.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213609097|ref|ZP_03368923.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648210|ref|ZP_03378263.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213850156|ref|ZP_03381054.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289825936|ref|ZP_06545095.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25284568|pir||AH0878 probable oxygen-independent coproporphyrinogen III oxidase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504181|emb|CAD02928.1| possible oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139000|gb|AAO70568.1| possible oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129299|gb|AAV78805.1| possible oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095448|emb|CAR61007.1| possible oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 378 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L+DL + +E + + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVKTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L EI +E N GT+E + ID+ Sbjct: 66 GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113 >gi|323463736|gb|ADX75889.1| molybdenum cofactor biosynthesis protein A [Staphylococcus pseudintermedius ED99] Length = 340 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%) Query: 41 DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C + + + +++ + + + +TGGEPLL+ Sbjct: 22 DRCNFRCDYCMPKEIFGDNYVFLPKNQLLSFEEIVRITKLYAQLGVKKVRITGGEPLLRR 81 Query: 100 DVP-LIQALNK-RGFE-IAVETNG 120 D+ LI + + G E I + TNG Sbjct: 82 DLHQLIAQITQIEGIEDIGLTTNG 105 >gi|307720758|ref|YP_003891898.1| Radical SAM domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306978851|gb|ADN08886.1| Radical SAM domain protein [Sulfurimonas autotrophica DSM 16294] Length = 373 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 18/102 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + + +Q+ I E G ++ + + Sbjct: 33 CNL-----------SCLHC---YSKSTLDEVDTLTTEQIKKTILEMKDNG---VKFIIFS 75 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132 GGEPL + D+ + + G + +NG I I Sbjct: 76 GGEPLTRKDLFEIADFCKENGIITYLSSNGLYFTKGNIKKIT 117 >gi|302876919|ref|YP_003845552.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|302579776|gb|ADL53788.1| Radical SAM domain protein [Clostridium cellulovorans 743B] Length = 504 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 18/91 (19%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCN+ +C+ C + + ++ DL + G +Y L Sbjct: 15 GCNM-----------RCKHCGS---ICENPLPDELTTEEALDLCRQLGELGM---QYITL 57 Query: 91 TGGEPLLQVDVPLI-QALNKRGFEIAVETNG 120 +GGEP + D LI + L K G + TNG Sbjct: 58 SGGEPTTRKDWHLIAKELTKNGVIPNIITNG 88 >gi|290956407|ref|YP_003487589.1| hypothetical protein SCAB_19011 [Streptomyces scabiei 87.22] gi|260645933|emb|CBG69024.1| putative hypothetical protein [Streptomyces scabiei 87.22] Length = 801 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 6/66 (9%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 C+L A + G GT + A+ I E + VL Sbjct: 19 CDLACDHCYVYQHADQSW-----RGRPGTMSEE-TFRRTAERIAEHAAAHRLPRVHVVLH 72 Query: 92 GGEPLL 97 GGEPLL Sbjct: 73 GGEPLL 78 >gi|255021491|ref|ZP_05293536.1| Molybdenum cofactor biosynthesis protein A [Acidithiobacillus caldus ATCC 51756] gi|254969074|gb|EET26591.1| Molybdenum cofactor biosynthesis protein A [Acidithiobacillus caldus ATCC 51756] Length = 332 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LI 104 CR+C + G G + L + I G ++ LTGGEPL+ + L+ Sbjct: 27 ACRYC-SPEEGSPYFAGADH--LTLTEYGRLLAIFGGLGVQHVRLTGGEPLIYPRLAGLL 83 Query: 105 QALNKRGFEI-AVETNGTIEPPQG------------IDWICVSPKAGCDLKIKGGQELKL 151 + L +V TNG + P I + P +GG K Sbjct: 84 EMLPTLAIPQWSVSTNGVLLPRWATPLREAGVRKVNISLDTLDP-QRFAWLTRGGSLAKA 142 Query: 152 VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRL 200 + + GFD ++ +D + E+T + ++ Q + R Sbjct: 143 LH---GIEAALDAGFDSVAINVVLLDAHSVTESTRMVETFVPQGAQVRF 188 >gi|237732747|ref|ZP_04563228.1| radical SAM-superfamily protein [Mollicutes bacterium D7] gi|229384170|gb|EEO34261.1| radical SAM-superfamily protein [Coprobacillus sp. D7] Length = 402 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D+ C C T +++ +L +I + G TGGEPLL+ D Sbjct: 106 DKCMYHCWHCSASKFMKDATSNSQFSTLELKKIIAQLQRLGVA---IIGFTGGEPLLRED 162 Query: 101 V-PLIQALNKR 110 + LI ++++R Sbjct: 163 LEELIASIDER 173 >gi|154253144|ref|YP_001413968.1| molybdenum cofactor biosynthesis protein A [Parvibaculum lavamentivorans DS-1] gi|154157094|gb|ABS64311.1| molybdenum cofactor biosynthesis protein A [Parvibaculum lavamentivorans DS-1] Length = 345 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 11/84 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C ++ + K +++L + G ++ R LTGGEPL++ D Sbjct: 34 DRCDFRCVYCMSEHMNFL-PKPELLTLEELDRVCSAFIAKGVRKLR---LTGGEPLVRRD 89 Query: 101 V-PLIQALNKRGFEIAVETNGTIE 123 V LI++L + +E +G ++ Sbjct: 90 VMTLIRSLGR-----HLE-SGALD 107 >gi|163852873|ref|YP_001640916.1| hopanoid biosynthesis associated radical SAM protein HpnH [Methylobacterium extorquens PA1] gi|218531699|ref|YP_002422515.1| hopanoid biosynthesis associated radical SAM protein HpnH [Methylobacterium chloromethanicum CM4] gi|240140201|ref|YP_002964678.1| Radical SAM superfamily protein [Methylobacterium extorquens AM1] gi|254562638|ref|YP_003069733.1| Radical SAM superfamily protein [Methylobacterium extorquens DM4] gi|163664478|gb|ABY31845.1| hopanoid biosynthesis associated radical SAM protein HpnH [Methylobacterium extorquens PA1] gi|218524002|gb|ACK84587.1| hopanoid biosynthesis associated radical SAM protein HpnH [Methylobacterium chloromethanicum CM4] gi|240010175|gb|ACS41401.1| Radical SAM superfamily protein [Methylobacterium extorquens AM1] gi|254269916|emb|CAX25894.1| Radical SAM superfamily protein [Methylobacterium extorquens DM4] Length = 387 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 20/119 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C R VD+ + + E V+ Sbjct: 38 CNLAC--------AGCG----KIDYPDEILNKRLPVDEALESVRECG------APVVVIA 79 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEPLL D+P ++Q + + V TN + + I SP + + G +E+ Sbjct: 80 GGEPLLHKDLPQIVQGIIAQKKFAIVCTN-ALLLEKKIKDYKPSPYFTWSIHLDGDKEM 137 >gi|193213491|ref|YP_001999444.1| radical SAM domain-containing protein [Chlorobaculum parvum NCIB 8327] gi|193086968|gb|ACF12244.1| Radical SAM domain protein [Chlorobaculum parvum NCIB 8327] Length = 425 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 27/107 (25%) Query: 25 VFC--RFSGCNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +F R CNL C++ D T ++GT +V+Q+ + E+ I G Sbjct: 72 IFITDR---CNLGCVY--------CKYADLTQLSEVRGT-----DVEQICRTL-EKLIRG 114 Query: 82 EKEGRYCVLTGGEPLL------QVDVPLIQALNKRGFEIAVETNGTI 122 +K+ R GGEPLL Q+ L ++ F A+++NGT+ Sbjct: 115 KKQVR-ITFQGGEPLLMHREIDQICAFLTGNFSEIEFSFALQSNGTL 160 >gi|204928090|ref|ZP_03219290.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322412|gb|EDZ07609.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 378 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L+DL + +E + + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVKTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L EI +E N GT+E + ID+ Sbjct: 66 GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113 >gi|152974241|ref|YP_001373758.1| YfkB-like domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022993|gb|ABS20763.1| YfkB-like domain protein [Bacillus cytotoxicus NVH 391-98] Length = 375 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q ++ L ++E R +TGGEP++ Sbjct: 45 RCEHCAVGYT-LQPKDPNPLPMELLLKRLDEV-----PHLRSLSITGGEPMMSKKSVDNY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 99 VTPLLKYAHERGVRTQINSNLTIDL 123 >gi|330508579|ref|YP_004385007.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6] gi|328929387|gb|AEB69189.1| radical SAM domain protein [Methanosaeta concilii GP-6] Length = 493 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 14/103 (13%) Query: 31 GCNLWSGREQD----------RLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GC L G ++ ++++C C F G + Q+A +++ Sbjct: 79 GCPLDCGLCENHKSGTLLGIIDVTSRCNLSCPICFA-DAGNDKNEPTIGQIASMMQVLRD 137 Query: 80 TGEKEGRYCVLTGGEPLLQVDVPLIQALNK-RGF-EIAVETNG 120 +GGEP ++VD+P I L K GF +I + TNG Sbjct: 138 QIPVPCPAIQFSGGEPTMRVDLPDIVYLAKTMGFAQILLATNG 180 >gi|242399539|ref|YP_002994964.1| hypothetical protein TSIB_1564 [Thermococcus sibiricus MM 739] gi|242265933|gb|ACS90615.1| hypothetical protein TSIB_1564 [Thermococcus sibiricus MM 739] Length = 355 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%) Query: 90 LTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTIEPPQ 126 ++GGEPLL+ D+ LI+ N + +ETNGT+ P Sbjct: 59 ISGGEPLLRSDLAITLIKVANNSKVKTVLETNGTLITPP 97 >gi|167630039|ref|YP_001680538.1| radical sam [Heliobacterium modesticaldum Ice1] gi|167592779|gb|ABZ84527.1| radical sam [Heliobacterium modesticaldum Ice1] Length = 331 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 49 FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL 107 FCD + N + L++E G + + +GGEPL++ D+ L+ Sbjct: 14 FCDHCYRDAGVKADQELNTQEGKQLLDEIAKAG---FKIMIFSGGEPLMRPDIVELVAYA 70 Query: 108 NKRGFEIAVETNGTI 122 +G TNGT+ Sbjct: 71 TSKGLRSVFGTNGTL 85 >gi|156932938|ref|YP_001436854.1| ribosomal RNA large subunit methyltransferase N [Cronobacter sakazakii ATCC BAA-894] gi|205829756|sp|A7MGV3|RLMN_ENTS8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|156531192|gb|ABU76018.1| hypothetical protein ESA_00741 [Cronobacter sakazakii ATCC BAA-894] Length = 388 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 60/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I +TG++ V+ G Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG 181 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL + VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 239 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N R + G + I Y Sbjct: 240 APN-DEIRDEIVPINKKYNIETFLAAVRRYI----GKSNANQGRVTIEYVM 285 >gi|85707986|ref|ZP_01039052.1| hypothetical protein NAP1_02085 [Erythrobacter sp. NAP1] gi|85689520|gb|EAQ29523.1| hypothetical protein NAP1_02085 [Erythrobacter sp. NAP1] Length = 336 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 9/86 (10%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C K +++L DL G + R +TGGEPL++ D Sbjct: 26 DRCDLRCTYC-MPERMTFLPKREVLTLEELYDLASGFIDRGVTKIR---ITGGEPLVRRD 81 Query: 101 V-PLIQAL---NKRGF-EIAVETNGT 121 + LI+AL G E+ + TN T Sbjct: 82 IVDLIRALGRKLGEGLEELTLTTNAT 107 >gi|46203602|ref|ZP_00051292.2| COG0535: Predicted Fe-S oxidoreductases [Magnetospirillum magnetotacticum MS-1] Length = 387 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 20/119 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A C R VD+ + + E V+ Sbjct: 38 CNLAC--------AGCG----KIDYPDEILNKRLPVDEALESVRECG------APVVVIA 79 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEPLL D+P ++Q + + V TN + + I SP + + G +E+ Sbjct: 80 GGEPLLHKDLPQIVQGIIAQKKFAIVCTN-ALLLEKKIKEYKPSPYFTWSIHLDGDKEM 137 >gi|262198850|ref|YP_003270059.1| radical SAM protein [Haliangium ochraceum DSM 14365] gi|262082197|gb|ACY18166.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365] Length = 416 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 9/62 (14%) Query: 90 LTGGEPLLQVDV-PLIQALNKRGF--EIAVETNGTIEPPQG------IDWICVSPKAGCD 140 ++GGEPLL D+ +++ + G + + TNG + G +D + +S A Sbjct: 197 VSGGEPLLHPDIAAILRMMRASGVSERVRLFTNGLLLASMGDDFWDALDELTISSYASAP 256 Query: 141 LK 142 +K Sbjct: 257 VK 258 >gi|326201082|ref|ZP_08190954.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] gi|325988650|gb|EGD49474.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] Length = 362 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 13/100 (13%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R C G + + ++ ++ E G + +L Sbjct: 71 CNLRCSGCYARELHSCS---------DGVRNSQLTWERWEEVFGEAEDLG---ISFILLA 118 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GGEPL++ DV +++A +++ + TNG + ID Sbjct: 119 GGEPLMRRDV-VVKAADRKNIIFPIFTNGLLIDDFYIDLF 157 >gi|228989607|ref|ZP_04149591.1| dehydrogenase [Bacillus pseudomycoides DSM 12442] gi|228995795|ref|ZP_04155455.1| dehydrogenase [Bacillus mycoides Rock3-17] gi|229003415|ref|ZP_04161235.1| dehydrogenase [Bacillus mycoides Rock1-4] gi|228757793|gb|EEM07018.1| dehydrogenase [Bacillus mycoides Rock1-4] gi|228763956|gb|EEM12843.1| dehydrogenase [Bacillus mycoides Rock3-17] gi|228770144|gb|EEM18724.1| dehydrogenase [Bacillus pseudomycoides DSM 12442] Length = 410 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q ++ L ++E R +TGGEP+L Sbjct: 80 RCEHCAVGYT-LQPKDPNPLPMELLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 133 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 PL++ ++RG + +N TI+ Sbjct: 134 VTPLLKYAHERGVRTQINSNLTIDL 158 >gi|239825986|ref|YP_002948610.1| YfkB-like domain protein [Geobacillus sp. WCH70] gi|239806279|gb|ACS23344.1| YfkB-like domain protein [Geobacillus sp. WCH70] Length = 374 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L +EE R +TGGEP+L + Sbjct: 44 RCEHCAVGYT-LQTKDPEALPLDLLIQRLEEI-----PHLRSLSITGGEPMLSLKSVNNY 97 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 VPL++ ++RG + +N T+E Sbjct: 98 VVPLLKYAHERGVRTQLNSNLTLEL 122 >gi|308377797|ref|ZP_07480440.2| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu009] gi|308354521|gb|EFP43372.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu009] Length = 355 Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 16/89 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C T +++ ++ E G +E LT Sbjct: 112 CNLC-----------CDYC--CVSSSPSTPHRELGAERIGRIVGEAARWGVRELF---LT 155 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GGEP L D+ I A + V TNG Sbjct: 156 GGEPFLLPDIDTIIATCVKQLPTTVLTNG 184 >gi|282163414|ref|YP_003355799.1| hypothetical protein MCP_0744 [Methanocella paludicola SANAE] gi|282155728|dbj|BAI60816.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 301 Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134 GEP L + L+ L +RG + TNGT P ++ + S Sbjct: 126 GEPTLYPHLKELVALLGERGMSTFIVTNGTR--PDVLEKVTPS 166 >gi|218753389|ref|ZP_03532185.1| MoaA-related protein [Mycobacterium tuberculosis GM 1503] Length = 354 Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 16/89 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C T +++ ++ E G +E LT Sbjct: 88 CNLC-----------CDYC--CVSSSPSTPHRELGAERIGRIVGEAARWGVRELF---LT 131 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GGEP L D+ I A + V TNG Sbjct: 132 GGEPFLLPDIDTIIATCVKQLPTTVLTNG 160 >gi|200388353|ref|ZP_03214965.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605451|gb|EDZ03996.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 378 Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L+DL + +E + + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVKTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L EI +E N GT+E + ID+ Sbjct: 66 GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113 >gi|168264450|ref|ZP_02686423.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168819866|ref|ZP_02831866.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205343497|gb|EDZ30261.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347072|gb|EDZ33703.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|322613501|gb|EFY10442.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621093|gb|EFY17951.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624157|gb|EFY20991.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628104|gb|EFY24893.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633223|gb|EFY29965.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636199|gb|EFY32907.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639537|gb|EFY36225.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647530|gb|EFY44019.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648714|gb|EFY45161.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653769|gb|EFY50095.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657875|gb|EFY54143.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663978|gb|EFY60177.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669011|gb|EFY65162.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672995|gb|EFY69102.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678014|gb|EFY74077.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681190|gb|EFY77223.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687880|gb|EFY83847.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194924|gb|EFZ80111.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199628|gb|EFZ84718.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202625|gb|EFZ87665.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207888|gb|EFZ92834.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212560|gb|EFZ97377.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214957|gb|EFZ99705.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222687|gb|EGA07052.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225430|gb|EGA09662.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230555|gb|EGA14673.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235094|gb|EGA19180.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239133|gb|EGA23183.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244509|gb|EGA28515.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247124|gb|EGA31090.1| HemN family oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253393|gb|EGA37222.1| HemN family oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256300|gb|EGA40036.1| HemN family oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262524|gb|EGA46080.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267380|gb|EGA50864.1| HemN family oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269216|gb|EGA52671.1| HemN family oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 378 Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L+DL + +E + + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVKTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L EI +E N GT+E + ID+ Sbjct: 66 GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113 >gi|300864159|ref|ZP_07109053.1| Molybdenum cofactor biosynthesis protein A [Oscillatoria sp. PCC 6506] gi|300337849|emb|CBN54199.1| Molybdenum cofactor biosynthesis protein A [Oscillatoria sp. PCC 6506] Length = 328 Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 14/88 (15%) Query: 41 DRLSAQCRFC--DT---DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 DR + +C++C D+ D++ Q +L L+ E +I LTGGEP Sbjct: 13 DRCNFRCQYCMPDSAEIDYILQQ----ELLTHQELLTLLREVFIPVGFTRFR--LTGGEP 66 Query: 96 LLQVD-VPLIQALNKRG--FEIAVETNG 120 LL V L++A+ + ++++ TNG Sbjct: 67 LLHPGAVELVRAIASQPETKDLSMTTNG 94 >gi|298676034|ref|YP_003727784.1| radical SAM domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298289022|gb|ADI74988.1| Radical SAM domain protein [Methanohalobium evestigatum Z-7303] Length = 498 Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 15/91 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + ++ + +Q+ D+++ + Sbjct: 98 CNLNCPICFANAKER------GYIY-------EPSFEQIRDMLQMLRNEEPTPCYAVQFS 144 Query: 92 GGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120 GGEP ++ D+P +I GF +I + TNG Sbjct: 145 GGEPTVRDDLPDIIAMARDMGFIQIQIATNG 175 >gi|226954112|ref|ZP_03824576.1| molybdopterin biosynthesis, protein A [Acinetobacter sp. ATCC 27244] gi|226835153|gb|EEH67536.1| molybdopterin biosynthesis, protein A [Acinetobacter sp. ATCC 27244] Length = 343 Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 9/84 (10%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + + ++ L + +TGGEPL++ Sbjct: 31 DRCNFKCVYC----MPEHPEWMKKQDLLSFEALFLFCQYMVSQGIENIRITGGEPLMRQG 86 Query: 101 ----VPLIQALNKRGF-EIAVETN 119 + +QAL G I++ TN Sbjct: 87 VVHFIAELQALRAEGLKRISITTN 110 >gi|209544124|ref|YP_002276353.1| pyrroloquinoline quinone biosynthesis protein PqqE [Gluconacetobacter diazotrophicus PAl 5] gi|209531801|gb|ACI51738.1| coenzyme PQQ biosynthesis protein E [Gluconacetobacter diazotrophicus PAl 5] Length = 372 Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 10/84 (11%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVD--QLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 R QC +C ++ + + G +G + ++ D E + +GGEP+ + Sbjct: 25 RCPLQCPYC-SNPLALDGREGELSTAEWRRVLDQAAELGVLQ------VHFSGGEPMARA 77 Query: 100 DVP-LIQALNKRGFEIAVETNGTI 122 D+P L++ RG + T+G + Sbjct: 78 DLPDLVRHAAGRGLYTNLITSGVL 101 >gi|162147062|ref|YP_001601523.1| pyrroloquinoline quinone biosynthesis protein PqqE [Gluconacetobacter diazotrophicus PAl 5] gi|161785639|emb|CAP55210.1| putative Coenzyme PQQ synthesis protein E [Gluconacetobacter diazotrophicus PAl 5] Length = 357 Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 10/84 (11%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVD--QLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 R QC +C ++ + + G +G + ++ D E + +GGEP+ + Sbjct: 10 RCPLQCPYC-SNPLALDGREGELSTAEWRRVLDQAAELGVLQ------VHFSGGEPMARA 62 Query: 100 DVP-LIQALNKRGFEIAVETNGTI 122 D+P L++ RG + T+G + Sbjct: 63 DLPDLVRHAAGRGLYTNLITSGVL 86 >gi|293401520|ref|ZP_06645663.1| pyruvate formate-lyase activating enzyme [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305158|gb|EFE46404.1| pyruvate formate-lyase activating enzyme [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 298 Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 2/65 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119 G + + + + +GGEP +QV ++Q G AVET Sbjct: 101 GEDMESKAILHEVMKDKDYYDMSHGGVTFSGGEPFVQVTSLCEILQEAKALGLHTAVETT 160 Query: 120 GTIEP 124 G Sbjct: 161 GNYPL 165 >gi|270339544|ref|ZP_06005172.2| anaerobic ribonucleoside-triphosphate reductase activating protein [Prevotella bergensis DSM 17361] gi|270334754|gb|EFA45540.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Prevotella bergensis DSM 17361] Length = 203 Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 20/83 (24%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 +GC +C C G +V+++ +IE Sbjct: 64 AGCP-----------NECPGCHNPQSW-DIRNGHEMSVEEIMQVIEA------DPFANVT 105 Query: 90 LTGGEPLLQVD--VPLIQALNKR 110 +GG+P+ Q D L +A+ +R Sbjct: 106 FSGGDPMFQPDGFAELAKAIRER 128 >gi|212704758|ref|ZP_03312886.1| hypothetical protein DESPIG_02822 [Desulfovibrio piger ATCC 29098] gi|212671821|gb|EEB32304.1| hypothetical protein DESPIG_02822 [Desulfovibrio piger ATCC 29098] Length = 393 Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 6/91 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + R + +C C V + G + +Q +I++ + +G Sbjct: 40 PVVVWNMTKRCNLKCVHCYAQAVPVDGADD--ISTEQAKTMIDDL---AAYGAPVMLFSG 94 Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GEPL++ D+ L +G + TNGT+ Sbjct: 95 GEPLVRKDLVELASHATAKGMRAVISTNGTL 125 >gi|329934724|ref|ZP_08284765.1| Transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|329305546|gb|EGG49402.1| Transcriptional regulator [Streptomyces griseoaurantiacus M045] Length = 427 Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 5/73 (6%) Query: 40 QDRLSAQCRFCDTDFVGIQGTKGG--RYNVDQL---ADLIEEQWITGEKEGRYCVLTGGE 94 R C +C Q +G R ++ + A LI VL GGE Sbjct: 36 HSRCDLACDYCYMYEAADQSWRGRPRRMELETVRRTAALIAAHAREHRPAEVRIVLHGGE 95 Query: 95 PLLQVDVPLIQAL 107 PLL L + L Sbjct: 96 PLLVGARHLEELL 108 >gi|302878316|ref|YP_003846880.1| Radical SAM domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581105|gb|ADL55116.1| Radical SAM domain protein [Gallionella capsiferriformans ES-2] Length = 354 Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 20/103 (19%) Query: 47 CRFCDTDFVGIQGTKGGRYNV-DQLA-----DLIEEQWITGEKEGRYCVLTGG-EPLLQV 99 C +C + G + D + +++E+ G K +GG EPLL Sbjct: 43 CWYC--AYRVSNLQLGEDIDYKDTIPKAKMFEIVEDVIAMGVKA---VTFSGGGEPLLYK 97 Query: 100 DVP-LIQALNKRGFEIAVETNGTIEPPQGID-------WICVS 134 +P +++ L + G +A TNG+ + D W+ VS Sbjct: 98 PLPEVVKRLAEGGVRVATLTNGSNLKGRVADAFAEYGTWVRVS 140 >gi|110678879|ref|YP_681886.1| nitrite reductase heme biosynthesis J protein, putative [Roseobacter denitrificans OCh 114] gi|109454995|gb|ABG31200.1| nitrite reductase heme biosynthesis J protein, putative [Roseobacter denitrificans OCh 114] Length = 404 Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 6/90 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + R + +CR C T G + Q +I++ E + +L+G Sbjct: 26 PVVIWNLTRRCNLKCRHCYT--TSSDNIFPGELSTKQALGVIDDL---AEFKIPALILSG 80 Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 GEPL + D+ L Q ++ +A+ TNGT Sbjct: 81 GEPLSRGDIYELAQYAREKVRYLALSTNGT 110 >gi|255505693|ref|ZP_05347582.3| anaerobic ribonucleoside-triphosphate reductase activating protein [Bryantella formatexigens DSM 14469] gi|255266329|gb|EET59534.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Bryantella formatexigens DSM 14469] Length = 162 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 21/94 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +F GC C C G + + + I G Sbjct: 15 IF--TQGCP-----------HHCPGCHNPQT-HDPEGGRLADTGAILEQI-----FGNPL 55 Query: 85 GRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAV 116 +GGEP +Q VPL + + RG + + Sbjct: 56 LSGVTFSGGEPFVQAAALVPLAEEIKARGKHLMI 89 >gi|254425081|ref|ZP_05038799.1| pyruvate formate-lyase 1-activating enzyme [Synechococcus sp. PCC 7335] gi|196192570|gb|EDX87534.1| pyruvate formate-lyase 1-activating enzyme [Synechococcus sp. PCC 7335] Length = 261 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 24/103 (23%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C++C DT G V+ L I++ Sbjct: 39 IRFVIFTQGCRL-----------RCQYCHNPDTR----DPHGGKAVTVEALIQEIKQYRT 83 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120 G ++GGEPLLQ + + Q G A++T+G Sbjct: 84 YMHSSGGGVTVSGGEPLLQPEFVREIFQQCQAEGIHTALDTSG 126 >gi|226304301|ref|YP_002764259.1| molybdenum cofactor biosynthesis protein MoaA [Rhodococcus erythropolis PR4] gi|226183416|dbj|BAH31520.1| molybdenum cofactor biosynthesis protein MoaA [Rhodococcus erythropolis PR4] Length = 352 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 17/114 (14%) Query: 17 GGHAGRV-AVFC--RFSGCNLWSGRE---QDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQ 69 G H+GR + F RF + ++ S +C +C + +G + ++ Sbjct: 16 GSHSGRPESDFLVDRFGR--VARDLRVSITEKCSLRCTYC----MPEEGLEAIASQDLLS 69 Query: 70 LADLIEEQWITGEKEG-RYCVLTGGEPLLQVDVPLIQALNKR---GFEIAVETN 119 + +++ + + G R TGGEPL++ D+ I A R G +++ TN Sbjct: 70 VEEIVRVVGVGVDLVGIREVRFTGGEPLMRSDLESIIAGCARRVPGIPLSITTN 123 >gi|167032628|ref|YP_001667859.1| radical SAM domain-containing protein [Pseudomonas putida GB-1] gi|166859116|gb|ABY97523.1| Radical SAM domain protein [Pseudomonas putida GB-1] Length = 472 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 14/94 (14%) Query: 47 CRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLI 104 C FC FV + ++ LIEE G + + GGEP L V LI Sbjct: 145 CEFC---FVTDEKWDIKEIQSIHSWGRLIEEAKECG---VPFISILGGEPTLYPGLVALI 198 Query: 105 QALNKRGFEIAVETNG------TIEPPQGIDWIC 132 + + + +NG IE + +W+ Sbjct: 199 RKAEQEKIKTTFTSNGLQCPGEVIEALENSEWVT 232 >gi|119719790|ref|YP_920285.1| radical SAM domain-containing protein [Thermofilum pendens Hrk 5] gi|119524910|gb|ABL78282.1| Radical SAM domain protein [Thermofilum pendens Hrk 5] Length = 374 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 16/80 (20%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F F+GC S +C +C + + G + +LA + ++ G + Sbjct: 156 TIF--FTGC-----------SFKCVYCQNWDISTRVDNGEKVTPQELAGIATALYLRGAR 202 Query: 84 EGRYCVLTGGEPLLQVDVPL 103 Y GG P Q+ V L Sbjct: 203 NINYV---GGNPDQQLHVIL 219 >gi|317471603|ref|ZP_07930947.1| molybdenum cofactor biosynthesis protein A [Anaerostipes sp. 3_2_56FAA] gi|316900918|gb|EFV22888.1| molybdenum cofactor biosynthesis protein A [Anaerostipes sp. 3_2_56FAA] Length = 324 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 20/107 (18%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR + +CR+C D V + ++L + E G + + +TGGEPL+ Sbjct: 18 DRCNLRCRYCMPEDIPSV----EHTDILSYEELLSICESAADLGICKFK---ITGGEPLV 70 Query: 98 QVDVP-LIQALNKRG--FEIAVETNGTIEPP-------QGIDWICVS 134 + I+ L + ++ + +NG + P GID I +S Sbjct: 71 RKGCAGFIERLKQLPGVRQVTLTSNGLLLEPYLERLKEAGIDGINIS 117 >gi|238024105|ref|YP_002908337.1| hypothetical protein bglu_2g06740 [Burkholderia glumae BGR1] gi|237878770|gb|ACR31102.1| Hypothetical protein bglu_2g06740 [Burkholderia glumae BGR1] Length = 289 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 11/68 (16%) Query: 92 GGEPLLQV-DVPLIQALNKRGF--EIAVETNG------TIEPPQGIDWICVS--PKAGCD 140 GGEPLL V LI + G I+V TNG + Q +D + +S PK G Sbjct: 91 GGEPLLHPELVELIGRVRDTGIAPTISVTTNGLKLGEMSDAFWQAVDALTISRYPKPGLS 150 Query: 141 LKIKGGQE 148 + E Sbjct: 151 ADLIAHIE 158 >gi|303280559|ref|XP_003059572.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459408|gb|EEH56704.1| predicted protein [Micromonas pusilla CCMP1545] Length = 406 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 9/77 (11%) Query: 28 RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 RF+ C Q + +C FC T G + D++ + + + Sbjct: 152 RFTVC----VSSQVGCAMRCSFCATGRQGFK----RNLTSDEIVNQVLALEDVFGRRATN 203 Query: 88 CVLTG-GEPLLQVDVPL 103 V+ G GEPL+ + L Sbjct: 204 VVMMGMGEPLMNLKEVL 220 >gi|83717731|ref|YP_440432.1| radical SAM domain-containing protein [Burkholderia thailandensis E264] gi|83651556|gb|ABC35620.1| radical SAM domain protein [Burkholderia thailandensis E264] Length = 371 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 22/116 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R +V++ ++E + Sbjct: 23 CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 63 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 GGEPLL ++P +++ + KR + + TN + + +D SP + + G Sbjct: 64 AGGEPLLHKEMPEIVRGIMKRKKFVYLCTN-ALLMEKKMDDYEPSPYFVWSVHLDG 118 >gi|90426035|ref|YP_534405.1| molybdenum cofactor synthesis-like [Rhodopseudomonas palustris BisB18] gi|90108049|gb|ABD90086.1| molybdenum cofactor synthesis-like [Rhodopseudomonas palustris BisB18] Length = 340 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 10/88 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C +G R + L +L R LTGGEPL++ + Sbjct: 30 DRCNFRCSYC----LGAHPVFAPRAELLTLDELDRLCSAFVGCGVRRVRLTGGEPLVRRN 85 Query: 101 V-PLIQALNKRGF-----EIAVETNGTI 122 + ++AL++ EI + TNG + Sbjct: 86 LMSFVRALSRHLVSGALDEITMTTNGAL 113 >gi|269140148|ref|YP_003296849.1| hypothetical protein ETAE_2805 [Edwardsiella tarda EIB202] gi|267985809|gb|ACY85638.1| hypothetical protein ETAE_2805 [Edwardsiella tarda EIB202] gi|304559982|gb|ADM42646.1| Ribosomal RNA large subunit methyltransferase N [Edwardsiella tarda FL6-60] Length = 411 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I Q +TG + V+ G Sbjct: 145 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAQKVTGNRPITNVVMMG 204 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + +P ++ L+ GF + + T+G + + D I V Sbjct: 205 MGEPLLNLTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 255 >gi|170289899|ref|YP_001736715.1| pyruvate-formate lyase-activating enzyme [Candidatus Korarchaeum cryptofilum OPF8] gi|170173979|gb|ACB07032.1| Pyruvate-formate lyase-activating enzyme [Candidatus Korarchaeum cryptofilum OPF8] Length = 138 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 6/49 (12%) Query: 89 VLTGGEPLLQVD--VPLIQALN-KRG-FEIAVETNGTIEPPQGI--DWI 131 +++GGEP + D + LI+ L +RG I V+TNG++ I D+I Sbjct: 6 IISGGEPTIHGDSLLELIKILRIRRGDLPIRVDTNGSLPKVMKIIADYI 54 >gi|167579085|ref|ZP_02371959.1| radical SAM domain protein [Burkholderia thailandensis TXDOH] gi|167617198|ref|ZP_02385829.1| radical SAM domain protein [Burkholderia thailandensis Bt4] gi|257141074|ref|ZP_05589336.1| radical SAM domain-containing protein [Burkholderia thailandensis E264] Length = 386 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 22/116 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R +V++ ++E + Sbjct: 38 CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 GGEPLL ++P +++ + KR + + TN + + +D SP + + G Sbjct: 79 AGGEPLLHKEMPEIVRGIMKRKKFVYLCTN-ALLMEKKMDDYEPSPYFVWSVHLDG 133 >gi|150376062|ref|YP_001312658.1| pyrroloquinoline quinone biosynthesis protein PqqE [Sinorhizobium medicae WSM419] gi|150030609|gb|ABR62725.1| coenzyme PQQ biosynthesis protein E [Sinorhizobium medicae WSM419] Length = 375 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 6/80 (7%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVD 100 R C +C Q + D+ D+ + G L+GGEP + Sbjct: 31 RCPLACPYCSNPIALTQA--KEELSTDEWVDVFAQAADLGVLHLH---LSGGEPASRRDL 85 Query: 101 VPLIQALNKRGFEIAVETNG 120 V L QA G + T+G Sbjct: 86 VDLTQAAGSLGLYTNLITSG 105 >gi|212223938|ref|YP_002307174.1| pyruvate formate lyase activating protein-like protein [Thermococcus onnurineus NA1] gi|212008895|gb|ACJ16277.1| pyruvate formate lyase activating protein-like protein [Thermococcus onnurineus NA1] Length = 350 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 19/81 (23%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 VF FSGCN +C FC ++ Q G Y +++A+ I + G K Sbjct: 136 TVF--FSGCNF-----------RCVFC-QNWDISQFRAGVEYPPNEMAEKITVAFAQGAK 181 Query: 84 EGRYCVLTGGEPLLQVDVPLI 104 + GGEP ++P I Sbjct: 182 NVNFV---GGEPT--PNLPFI 197 >gi|94263035|ref|ZP_01286854.1| Radical SAM:Molybdenum cofactor synthesis-like [delta proteobacterium MLMS-1] gi|93456578|gb|EAT06686.1| Radical SAM:Molybdenum cofactor synthesis-like [delta proteobacterium MLMS-1] Length = 338 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 21/109 (19%) Query: 27 CRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 R + CNL R C + + + ++L L+ G Sbjct: 25 VRLAVTDRCNLNC--RYCRPKGPC----------EEPRRELLSYEELERLVRLLVAMGIS 72 Query: 84 EGRYCVLTGGEPLL-QVDVPLIQALNK-RGFE-IAVETNGTIEPPQGID 129 + R LTGGEPL+ + + L G E +A+ TN T+ D Sbjct: 73 KVR---LTGGEPLVRHGMIAFMGRLRAIAGLEQLALTTNATLLASHLDD 118 >gi|94269536|ref|ZP_01291489.1| Radical SAM:Molybdenum cofactor synthesis-like [delta proteobacterium MLMS-1] gi|93451185|gb|EAT02100.1| Radical SAM:Molybdenum cofactor synthesis-like [delta proteobacterium MLMS-1] Length = 338 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 21/109 (19%) Query: 27 CRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 R + CNL R C + + + ++L L+ G Sbjct: 25 VRLAVTDRCNLNC--RYCRPKGPC----------EEPRRELLSYEELERLVRLLVAMGIS 72 Query: 84 EGRYCVLTGGEPLL-QVDVPLIQALNK-RGFE-IAVETNGTIEPPQGID 129 + R LTGGEPL+ + + L G E +A+ TN T+ D Sbjct: 73 KVR---LTGGEPLVRHGMIAFMGRLRAIAGLEQLALTTNATLLASHLDD 118 >gi|25027857|ref|NP_737911.1| molybdenum cofactor biosynthesis protein A [Corynebacterium efficiens YS-314] gi|259506248|ref|ZP_05749150.1| molybdopterin cofactor biosynthesis protein A [Corynebacterium efficiens YS-314] gi|23493140|dbj|BAC18111.1| putative molybdopterin biosynthesis protein MoaA2 [Corynebacterium efficiens YS-314] gi|259166152|gb|EEW50706.1| molybdopterin cofactor biosynthesis protein A [Corynebacterium efficiens YS-314] Length = 381 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 17/91 (18%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEK-EGRYCVLTGGEPL 96 DR + +C +C + +Q A+ I I EK R TGGEPL Sbjct: 63 DRCNLRCTYC------MPAEGLEWMPTEQTLSDAETIRLIRIAVEKLGIRQIRFTGGEPL 116 Query: 97 LQVDVP----LIQALN-KRG--FEIAVETNG 120 L+ ++ AL G A+ TNG Sbjct: 117 LRKNLEDIISATTALRTDEGETVRTALTTNG 147 >gi|294676269|ref|YP_003576884.1| molybdenum cofactor biosynthesis protein A [Rhodobacter capsulatus SB 1003] gi|294475089|gb|ADE84477.1| molybdenum cofactor biosynthesis protein A-1 [Rhodobacter capsulatus SB 1003] Length = 333 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 15/86 (17%) Query: 41 DRLSAQCRFC-D--TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D T F+ + ++++L L G ++ R LTGGEPLL Sbjct: 21 DRCDFRCSYCMDEGTRFL----PRADLLSLEELDRLCSVFIGLGVRKLR---LTGGEPLL 73 Query: 98 QVDVPLIQALNKRGFEIAVETNGTIE 123 + +V + RG +ET G + Sbjct: 74 RRNV--MSLF--RGLSRHLET-GALH 94 >gi|182678756|ref|YP_001832902.1| molybdenum cofactor biosynthesis protein A [Beijerinckia indica subsp. indica ATCC 9039] gi|182634639|gb|ACB95413.1| molybdenum cofactor biosynthesis protein A [Beijerinckia indica subsp. indica ATCC 9039] Length = 351 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ K +++L L G K R +TGGEPL+ Sbjct: 40 DRCDMRCTYCMAEDMHFL----PKEQLLTLEELDRLCSAFIARGVKTLR---ITGGEPLI 92 Query: 98 QVD-VPLIQALNKRGF-----EIAVETNGT 121 + + + L +AL++ E+ + TNG+ Sbjct: 93 RRNILSLFRALSRHLKSGALSELTLTTNGS 122 >gi|160931645|ref|ZP_02079039.1| hypothetical protein CLOLEP_00476 [Clostridium leptum DSM 753] gi|156869290|gb|EDO62662.1| hypothetical protein CLOLEP_00476 [Clostridium leptum DSM 753] Length = 300 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%) Query: 94 EPLLQVDV--PLIQALNKRGFEIAVETNG 120 EPL+Q D L+ A K G +ET+G Sbjct: 133 EPLMQPDFTYELLSAAKKEGLHTCLETSG 161 >gi|108801440|ref|YP_641637.1| molybdenum cofactor biosynthesis protein A [Mycobacterium sp. MCS] gi|119870593|ref|YP_940545.1| molybdenum cofactor biosynthesis protein A [Mycobacterium sp. KMS] gi|126437425|ref|YP_001073116.1| molybdenum cofactor biosynthesis protein A [Mycobacterium sp. JLS] gi|122976488|sp|Q1B3F3|MOAA_MYCSS RecName: Full=Molybdenum cofactor biosynthesis protein A gi|166217883|sp|A3Q648|MOAA_MYCSJ RecName: Full=Molybdenum cofactor biosynthesis protein A gi|166217884|sp|A1ULP7|MOAA_MYCSK RecName: Full=Molybdenum cofactor biosynthesis protein A gi|108771859|gb|ABG10581.1| GTP cyclohydrolase subunit MoaA [Mycobacterium sp. MCS] gi|119696682|gb|ABL93755.1| GTP cyclohydrolase subunit MoaA [Mycobacterium sp. KMS] gi|126237225|gb|ABO00626.1| GTP cyclohydrolase subunit MoaA [Mycobacterium sp. JLS] Length = 350 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 67/180 (37%), Gaps = 23/180 (12%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPL--- 96 DR + +C +C G+ G + + D+L L+ TGGEPL Sbjct: 41 DRCNLRCTYC-MPAEGLDWLPGEQLLSADELIRLLR--IAVTRLGITNVRFTGGEPLVVR 97 Query: 97 -LQVDVPLIQALNKRGFEIAVETNG-------TIEPPQGIDWICV---SPKAGCDLKIKG 145 L+ V AL R E+A+ TNG G+D + V S A +I Sbjct: 98 HLEDVVAATGALRPRP-EMAMTTNGIGLAKRARALKAAGLDRVNVSLDSVDAAHFARITR 156 Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN-PKWRLSVQT 204 L V + + E + L P G L++ +L + YC + + R+ Q Sbjct: 157 RDRLGDVLAGLAAAKEAGLTPVKVNAVLDPDTG--LDDAVSL-LRYCLDHGYQLRIIEQM 213 >gi|325968382|ref|YP_004244574.1| pyruvate formate lyase activating enzyme [Vulcanisaeta moutnovskia 768-28] gi|323707585|gb|ADY01072.1| pyruvate formate lyase activating enzyme [Vulcanisaeta moutnovskia 768-28] Length = 435 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 18/93 (19%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F F+ CN +C FC + G N Q+A + G Sbjct: 151 TIF--FTSCNF-----------RCAFCQNADISRDRFNGVVMNPRQIASAAVILRLEGVH 197 Query: 84 EGRYCVLTGGEPL--LQVDVPLIQALNKRGFEI 114 + GGEP L V I+ + +G ++ Sbjct: 198 NINWV---GGEPTPHLHNIVETIRLIANQGIKV 227 >gi|321313219|ref|YP_004205506.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis BSn5] gi|320019493|gb|ADV94479.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis BSn5] Length = 341 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 10/55 (18%) Query: 90 LTGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEP-------PQGIDWICVS 134 LTGGEPL++ D+P LI+ L + G IA+ TNG++ P G+ + +S Sbjct: 76 LTGGEPLMRKDMPELIKKLARIPGIRDIAMTTNGSLLPVYAKRLKEAGLKRVTIS 130 >gi|319783607|ref|YP_004143083.1| molybdenum cofactor biosynthesis protein A [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169495|gb|ADV13033.1| molybdenum cofactor biosynthesis protein A [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 331 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 64/170 (37%), Gaps = 32/170 (18%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ K ++++L L G + R LTGGEPL+ Sbjct: 20 DRCDFRCTYCMAEDMAFL----PKKDLLSLEELDRLCTVFIEKGVRRLR---LTGGEPLV 72 Query: 98 QVDV-PLIQALNKRGFEIAVE-----TNGTI-------EPPQGIDWICVS------PKAG 138 + ++ L++ L++ A+E TNG+ G+ I VS K Sbjct: 73 RKNIMHLVRQLSRHLESGALEELTLTTNGSQLSRFAAELADCGVRRINVSLDTLDADKFH 132 Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 KI L V ++ + + +L+ + L E A Sbjct: 133 ---KITRWGHLDKVMQGIDAAQAAGLKVKLNAVALKDFNDAELPEMMRWA 179 >gi|291486249|dbj|BAI87324.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis subsp. natto BEST195] Length = 341 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 10/55 (18%) Query: 90 LTGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEP-------PQGIDWICVS 134 LTGGEPL++ D+P LI+ L + G IA+ TNG++ P G+ + +S Sbjct: 76 LTGGEPLMRKDMPELIKKLARIPGIRDIAMTTNGSLLPVYAKRLKEAGLKRVTIS 130 >gi|258515124|ref|YP_003191346.1| anaerobic ribonucleoside triphosphate reductase activating protein [Desulfotomaculum acetoxidans DSM 771] gi|257778829|gb|ACV62723.1| anaerobic ribonucleoside triphosphate reductase activating protein [Desulfotomaculum acetoxidans DSM 771] Length = 155 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 19/85 (22%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 ++F GC+ R C + G + +++I+E W + Sbjct: 23 SIFI--QGCH--------RRCEGCH----NPSLQPFEGGEEMDT---SEIIDEIWRNRDY 65 Query: 84 EGRYCVLTGGEPLLQVDVPLIQALN 108 V GGEPL Q + L + L Sbjct: 66 YES-VVFVGGEPLDQPE-SLKELLK 88 >gi|255524293|ref|ZP_05391251.1| Radical SAM domain protein [Clostridium carboxidivorans P7] gi|296185250|ref|ZP_06853660.1| radical SAM domain protein [Clostridium carboxidivorans P7] gi|255511976|gb|EET88258.1| Radical SAM domain protein [Clostridium carboxidivorans P7] gi|296050084|gb|EFG89508.1| radical SAM domain protein [Clostridium carboxidivorans P7] Length = 394 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C + + G ++ + LIE+ GE + + Sbjct: 47 CNLKC--------MHC------YAESDNKQYEGELSLKEAESLIEDL---GEFKVPVILF 89 Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 +GGEPLL+ D+ ++ K + TNGT+ Sbjct: 90 SGGEPLLRKDIFHILDYTKKYNIRSTLSTNGTL 122 >gi|118431072|ref|NP_147264.2| molybdenum cofactor biosynthesis protein MoaA [Aeropyrum pernix K1] gi|116062398|dbj|BAA79443.2| molybdenum cofactor biosynthesis protein MoaA [Aeropyrum pernix K1] Length = 367 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 21/102 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL--IEEQWITGEKEGRYCV 89 CNL C FC T+ G + + +E+ I GE R V Sbjct: 33 CNL-----------DCFFC----HMEGATESGPMRPGSWSPVLSVEDYDIIGEAASRLGV 77 Query: 90 ----LTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQG 127 LTGGEPL++ DV I A+ R E+++ TNG + P + Sbjct: 78 DSFKLTGGEPLIRGDVDKIVAVLARYGEVSMTTNGILLPLKA 119 >gi|16080723|ref|NP_391551.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis subsp. subtilis str. 168] gi|221311629|ref|ZP_03593476.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis subsp. subtilis str. 168] gi|221315956|ref|ZP_03597761.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320868|ref|ZP_03602162.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis subsp. subtilis str. JH642] gi|221325153|ref|ZP_03606447.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis subsp. subtilis str. SMY] gi|730103|sp|P39757|MOAA_BACSU RecName: Full=Molybdenum cofactor biosynthesis protein A; Short=Protein narA gi|516272|emb|CAA84540.1| unknown [Bacillus subtilis subsp. subtilis str. 168] gi|1648856|emb|CAB03683.1| MoaA-like protein [Bacillus subtilis subsp. subtilis str. 168] gi|2636195|emb|CAB15687.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis subsp. subtilis str. 168] Length = 341 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 10/55 (18%) Query: 90 LTGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEP-------PQGIDWICVS 134 LTGGEPL++ D+P LI+ L + G IA+ TNG++ P G+ + +S Sbjct: 76 LTGGEPLMRKDMPELIKKLARIPGIRDIAMTTNGSLLPVYAKRLKEAGLKRVTIS 130 >gi|6685662|sp|Q9YEV3|MOAA_AERPE RecName: Full=Probable molybdenum cofactor biosynthesis protein A Length = 355 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 21/102 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL--IEEQWITGEKEGRYCV 89 CNL C FC T+ G + + +E+ I GE R V Sbjct: 21 CNL-----------DCFFC----HMEGATESGPMRPGSWSPVLSVEDYDIIGEAASRLGV 65 Query: 90 ----LTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQG 127 LTGGEPL++ DV I A+ R E+++ TNG + P + Sbjct: 66 DSFKLTGGEPLIRGDVDKIVAVLARYGEVSMTTNGILLPLKA 107 >gi|330432465|gb|AEC17524.1| conserved hypothetical protein, radical SAM superfamily [Gallibacterium anatis UMN179] Length = 332 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 5/68 (7%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103 + CR+C + G + + + D I + E + +GG+PL+ D L Sbjct: 117 AVNCRYCFRRHFPYEANPGNKASWRKTLDYIAQHSEIEE-----VIFSGGDPLMAKDREL 171 Query: 104 IQALNKRG 111 L + Sbjct: 172 AWLLEQLN 179 >gi|315231527|ref|YP_004071963.1| arylsulfatase regulatory protein [Thermococcus barophilus MP] gi|315184555|gb|ADT84740.1| arylsulfatase regulatory protein [Thermococcus barophilus MP] Length = 516 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 28/113 (24%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-L 90 CNL C +C + G + TKGG ++ ++ + + + V + Sbjct: 144 CNL-----------ACPYC---YEGDRKTKGGLLTPKKIDKILTFAKNHEQNDKKPIVSI 189 Query: 91 T--GGEPLL------QVDVPLIQALNKRG----FEIAVETNGTIEPPQGIDWI 131 + GGEPLL L + + G + + TNG + + ID I Sbjct: 190 SFYGGEPLLNWKGCKYTLKRL-KEMKDEGEIRDYSTSFVTNGILINEETIDAI 241 >gi|308380147|ref|ZP_07488858.2| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu011] gi|308362436|gb|EFP51287.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu011] Length = 325 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 16/89 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C T +++ ++ E G +E LT Sbjct: 82 CNLC-----------CDYC--CVSSSPSTPHRELGAERIGRIVGEAARWGVRELF---LT 125 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GGEP L D+ I A + V TNG Sbjct: 126 GGEPFLLPDIDTIIATCVKQLPTTVLTNG 154 >gi|308375648|ref|ZP_07444630.2| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu007] gi|308345582|gb|EFP34433.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu007] Length = 326 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 16/89 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C T +++ ++ E G +E LT Sbjct: 83 CNLC-----------CDYC--CVSSSPSTPHRELGAERIGRIVGEAARWGVRELF---LT 126 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GGEP L D+ I A + V TNG Sbjct: 127 GGEPFLLPDIDTIIATCVKQLPTTVLTNG 155 >gi|317131167|ref|YP_004090481.1| Radical SAM domain protein [Ethanoligenens harbinense YUAN-3] gi|315469146|gb|ADU25750.1| Radical SAM domain protein [Ethanoligenens harbinense YUAN-3] Length = 359 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 16/92 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R C + + A+L EE G + +L Sbjct: 68 CNLRCAGCYARADGACN----------TEEACLLPAARWAELFEEAAAMG---ISFILLA 114 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GGEPL +VD + + F + TNGT+ Sbjct: 115 GGEPLTRVDVLEAAARVPSAVFPVL--TNGTL 144 >gi|288555141|ref|YP_003427076.1| hypothetical protein BpOF4_10655 [Bacillus pseudofirmus OF4] gi|288546301|gb|ADC50184.1| hypothetical protein BpOF4_10655 [Bacillus pseudofirmus OF4] Length = 370 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99 +C C + +Q +D L ++E +TGGEP+L Q Sbjct: 43 RCEHCAVGYT-LQHKDPTPLPLDLLIMRLDEIPHLKAFS-----ITGGEPMLSMKSVDQY 96 Query: 100 DVPLIQALNKRGFEIAVETNGTIEP 124 VPL++ ++RG + +N T++ Sbjct: 97 VVPLLKYAHERGVRTQINSNLTLDL 121 >gi|260598903|ref|YP_003211474.1| ribosomal RNA large subunit methyltransferase N [Cronobacter turicensis z3032] gi|260218080|emb|CBA32831.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter turicensis z3032] Length = 388 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 59/171 (34%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I +TG++ V+ G Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG 181 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL + VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 239 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N R L + I Y Sbjct: 240 APN-DEIRDEIVPINKKYNIETFLAAVRRYL----DKSNANQGRVTIEYVM 285 >gi|184200950|ref|YP_001855157.1| putative oxygen-independent coproporphyrinogen III oxidase [Kocuria rhizophila DC2201] gi|183581180|dbj|BAG29651.1| putative oxygen-independent coproporphyrinogen III oxidase [Kocuria rhizophila DC2201] Length = 414 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 17/93 (18%) Query: 44 SAQCRFCD----TDFVGIQGTKGGRYNVDQLADL-----IEEQWITGEKEGRYCVLTGGE 94 + +C +CD T G Y+ D A++ + + + + GG Sbjct: 39 AVRCGYCDFNTYTMEQLGDGVSRADYHADAAAEVRFARSVLDAAGSPPRPLHSVFFGGGT 98 Query: 95 PLLQVDVPLIQALNKR--------GFEIAVETN 119 P L L L++ G E+ VE N Sbjct: 99 PTLLPARELAAMLHQARESFGLAPGAEVTVEAN 131 >gi|220915384|ref|YP_002490688.1| oxygen-independent coproporphyrinogen III oxidase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953238|gb|ACL63622.1| oxygen-independent coproporphyrinogen III oxidase [Anaeromyxobacter dehalogenans 2CP-1] Length = 379 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 8/84 (9%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103 + +C +CD + GRY A+L R L GG P L L Sbjct: 15 THRCPYCDFAVTTERPPGAGRYARAVRAELGLRAPAFEGLSLRSVYLGGGTPSLWDADEL 74 Query: 104 ---IQALNKR-----GFEIAVETN 119 + A+ R G E+ +E N Sbjct: 75 RDVLAAVRDRFGLPGGAEVTLEVN 98 >gi|154149819|ref|YP_001403437.1| tRNA-modifying enzyme [Candidatus Methanoregula boonei 6A8] gi|153998371|gb|ABS54794.1| Wyosine base formation [Methanoregula boonei 6A8] Length = 303 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Query: 70 LADLIEEQWITGEKEGRYCVLT-GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 L + + ++ + R+ ++ GEP L +P L+ N G+ V +NGT Sbjct: 108 LGNTVTDERWQEALKPRHVAISLSGEPTLYSRLPELVDLFNANGYTTFVVSNGTNP 163 >gi|21227448|ref|NP_633370.1| tRNA-modifying enzyme [Methanosarcina mazei Go1] gi|20905817|gb|AAM31042.1| Fe-S oxidoreductase [Methanosarcina mazei Go1] Length = 365 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 + + E+W+ G + + GEP +P LI+ KRGF + TNGT+ Sbjct: 166 NALRERWLEGNQPNNVAISLSGEPTFYPYLPELIEEYEKRGFTTFLVTNGTVP 218 >gi|271501574|ref|YP_003334600.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech586] gi|270345129|gb|ACZ77894.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech586] Length = 392 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I +TG++ V+ G Sbjct: 126 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG 185 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL + VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 186 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 243 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N + R L + + Y Sbjct: 244 APT-DEIRNEIMPINKKYDIETFLAAVRRYL----DKSNANQGRVTVEYVM 289 >gi|251788745|ref|YP_003003466.1| ribosomal RNA large subunit methyltransferase N [Dickeya zeae Ech1591] gi|247537366|gb|ACT05987.1| radical SAM enzyme, Cfr family [Dickeya zeae Ech1591] Length = 392 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I +TG++ V+ G Sbjct: 126 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG 185 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL + VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 186 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 243 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N + R L + + Y Sbjct: 244 APT-DEIRNEIMPINKKYDIETFLAAVRRYL----DKSNANQGRVTVEYVM 289 >gi|242240158|ref|YP_002988339.1| ribosomal RNA large subunit methyltransferase N [Dickeya dadantii Ech703] gi|242132215|gb|ACS86517.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech703] Length = 393 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I +TG++ V+ G Sbjct: 126 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG 185 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL + VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 186 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 243 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N + R L + + Y Sbjct: 244 APT-DEIRNEIMPINKKYDIETFLAAVRRYL----DKSNANQGRVTVEYVM 289 >gi|262197456|ref|YP_003268665.1| radical SAM protein [Haliangium ochraceum DSM 14365] gi|262080803|gb|ACY16772.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365] Length = 474 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 8/84 (9%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV------ 99 C +C V + G Q A + E+ + + GGEPLL Sbjct: 107 ACTYCCQAQV-MDGAVMKPETARQSARWLAERARQIGADSLHLSFVGGEPLLHPARIETI 165 Query: 100 DVPLIQALNKR-GFEIAVETNGTI 122 L L +++ TNG + Sbjct: 166 MSALADELADELPVRMSLITNGAL 189 >gi|225874256|ref|YP_002755715.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196] gi|225792393|gb|ACO32483.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196] Length = 374 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 15/89 (16%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 C L CR C + N D+ DL+ + G+ + Sbjct: 31 TQACPL-----------ACRHC--RAEAVTMPHPCELNYDESRDLLRQIAAFGD-PKPHL 76 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAV 116 +LTGG+PL ++D+ LI G +++ Sbjct: 77 ILTGGDPLQRLDLFSLIDEARDLGISVSI 105 >gi|218658222|ref|ZP_03514152.1| molybdenum cofactor biosynthesis protein A [Rhizobium etli IE4771] Length = 128 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 9/86 (10%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C K +++L L G ++ R LTGGEPL++ + Sbjct: 18 DRCDFRCTYC-MAENMTFLPKKDLLTLEELDRLCSAFIAKGVRKIR---LTGGEPLVRKN 73 Query: 101 VP-LIQALNKR---GF-EIAVETNGT 121 + L++ L ++ G E+ + TNG+ Sbjct: 74 IMYLVRRLGEKIGSGLDELTLTTNGS 99 >gi|163734203|ref|ZP_02141644.1| nitrite reductase heme biosynthesis J protein, putative [Roseobacter litoralis Och 149] gi|161392739|gb|EDQ17067.1| nitrite reductase heme biosynthesis J protein, putative [Roseobacter litoralis Och 149] Length = 397 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 6/90 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + R + +CR C T G + Q +I++ E + +L+G Sbjct: 19 PVVIWNLTRRCNLKCRHCYT--TSSDNIFPGELSTKQALGVIDDL---AEFKIPALILSG 73 Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 GEPL + D+ L Q K+ +A+ TNGT Sbjct: 74 GEPLSRGDIYELAQYARKKVRYLALSTNGT 103 >gi|89901088|ref|YP_523559.1| hypothetical protein Rfer_2310 [Rhodoferax ferrireducens T118] gi|123397164|sp|Q21W25|RLMN_RHOFD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|89345825|gb|ABD70028.1| conserved hypothetical protein [Rhodoferax ferrireducens T118] Length = 382 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 40/124 (32%), Gaps = 36/124 (29%) Query: 24 AVFC----RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 AVF R G Q + CRFC T G ++I + W Sbjct: 92 AVFIPEEDR--G--TLCISSQAGCAMGCRFCSTGHQGFSRNLKT-------GEIIAQLWF 140 Query: 80 TGEKEGRY----------CVLTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETN 119 ++ V+ G GEPL Q L+ AL G+ + V T+ Sbjct: 141 AEHFLRKHLQRDERVISNVVMMGMGEPL-QNYAELVPALRAMLDDHGYGLSRRRVTVSTS 199 Query: 120 GTIE 123 G + Sbjct: 200 GVVP 203 >gi|238782658|ref|ZP_04626688.1| pyruvate formate-lyase 3-activating enzyme [Yersinia bercovieri ATCC 43970] gi|238716318|gb|EEQ08300.1| pyruvate formate-lyase 3-activating enzyme [Yersinia bercovieri ATCC 43970] Length = 299 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118 G +++ + + + G L+GGEP +Q +V L+Q + G AVE+ Sbjct: 101 GRPIDLEATMETLLRDMPFYRRSGGGVTLSGGEPFMQPEVAAELLQRCYQLGIHTAVES 159 >gi|317484303|ref|ZP_07943226.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Bilophila wadsworthia 3_1_6] gi|316924447|gb|EFV45610.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Bilophila wadsworthia 3_1_6] Length = 167 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 21/87 (24%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRY 87 GC C+ C GGR + D + + + I R Sbjct: 27 TQGCP-----------HHCKGC--HNPTTHPFDGGRMVSPDWVFADVRKNPIV-----RG 68 Query: 88 CVLTGGEPLLQ--VDVPLIQALNKRGF 112 +GGEP +Q PL + L G+ Sbjct: 69 VTFSGGEPFVQSGKLAPLAERLRAAGY 95 >gi|146306670|ref|YP_001187135.1| molybdenum cofactor synthesis domain-containing protein [Pseudomonas mendocina ymp] gi|145574871|gb|ABP84403.1| molybdenum cofactor synthesis domain protein [Pseudomonas mendocina ymp] Length = 322 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 25/165 (15%) Query: 46 QCRFC--DTDF-VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDV 101 C +C D V Q +A LIE I + +TGGEPL+ Sbjct: 24 ACTYCVPDGKRLVAAQDELSAEAMARGVAYLIEAAGIERLR------ITGGEPLVSTRLD 77 Query: 102 PLIQALNKRGF-EIAVETNGT-------IEPPQGIDWICVS---PKAGCDLKIKGGQELK 150 P ++ +++ G +I++ TNG + GI + VS A I G +L Sbjct: 78 PFLRQVSQLGLDDISLTTNGQLLERKLPLLVECGIRRLNVSLDTLDASAFRSIARGGDLA 137 Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 V + + E + + ++ P+ G L++ L + YC + Sbjct: 138 TVLAGMEAAREAGMKI---KVNMVPLRGQNLDQVLPL-LDYCLER 178 >gi|18312199|ref|NP_558866.1| molybdenum cofactor biosynthesis protein (moaA) [Pyrobaculum aerophilum str. IM2] gi|24211994|sp|Q8ZYE5|MOAA_PYRAE RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|18159637|gb|AAL63048.1| molybdenum cofactor biosynthesis protein (moaA) [Pyrobaculum aerophilum str. IM2] Length = 310 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 6/82 (7%) Query: 40 QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 D + C FC F G +G + + G + + +TGGEPLL+ Sbjct: 18 NDECNYNCVFC--HFEGQSRRQGRYLTAEDYGFVTSVFKSLGVADFK---ITGGEPLLRG 72 Query: 100 DVPLIQA-LNKRGFEIAVETNG 120 D+ LI A + K G + + TNG Sbjct: 73 DIDLIVANIAKTGAYVTLTTNG 94 >gi|326392152|ref|ZP_08213626.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325991807|gb|EGD50325.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 460 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 15/67 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV-DQLADLIEEQWITGEKEGRYCVL 90 CNL +C++C + V +++A+ + + + + V Sbjct: 92 CNL-----------KCKYC---YANHGDYNQEEAIVTEEIAEKVADFIKLNFPKVKVIVF 137 Query: 91 TGGEPLL 97 GGEPLL Sbjct: 138 FGGEPLL 144 >gi|325261046|ref|ZP_08127784.1| putative radical SAM domain protein [Clostridium sp. D5] gi|324032500|gb|EGB93777.1| putative radical SAM domain protein [Clostridium sp. D5] Length = 312 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETN 119 Y VD L +++ + EG +GG+PL+ D L L K A+ET+ Sbjct: 111 KEYTVDGLMKILKRDFNNWGSEGG-VTFSGGDPLMHHDF-LYDVLMECKKAHIHTAIETS 168 Query: 120 G 120 G Sbjct: 169 G 169 >gi|283786133|ref|YP_003365998.1| radical SAM superfamily protein [Citrobacter rodentium ICC168] gi|282949587|emb|CBG89205.1| radical SAM superfamily protein [Citrobacter rodentium ICC168] Length = 388 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 181 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL + VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 239 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N R L+ + I Y Sbjct: 240 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 285 >gi|150015587|ref|YP_001307841.1| glycyl-radical activating family protein [Clostridium beijerinckii NCIMB 8052] gi|149902052|gb|ABR32885.1| glycyl-radical enzyme activating protein family [Clostridium beijerinckii NCIMB 8052] Length = 300 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAV 116 +G + + + + + + E+ L+GGE L+ + L++ L ++ + Sbjct: 102 SAEGEFLTLSHVMNEVMKDEMFYEESNGGVTLSGGEVLMHHEFASQLLKVLKEKNIHTTI 161 Query: 117 ETNG 120 ET G Sbjct: 162 ETTG 165 >gi|317484667|ref|ZP_07943568.1| radical SAM superfamily protein [Bilophila wadsworthia 3_1_6] gi|316924023|gb|EFV45208.1| radical SAM superfamily protein [Bilophila wadsworthia 3_1_6] Length = 397 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 6/96 (6%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 C L + + C+ C G + ++ LI+ G + T Sbjct: 50 CRLIAWEVTRSCNLACKHC--RAEAHPEPYPGELSTEEAKALIDTFPSVG---NPIIIFT 104 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 GG+P+++ DV LI +G + NGT+ P+ Sbjct: 105 GGDPMIRPDVYELIAYAGSKGLRCVMSPNGTLITPE 140 >gi|311070188|ref|YP_003975111.1| molybdenum cofactor biosynthesis protein A [Bacillus atrophaeus 1942] gi|310870705|gb|ADP34180.1| molybdenum cofactor biosynthesis protein A [Bacillus atrophaeus 1942] Length = 341 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 10/55 (18%) Query: 90 LTGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPP-------QGIDWICVS 134 LTGGEPL++ D+P LI+ L + G IA+ TNG++ P G+ + VS Sbjct: 76 LTGGEPLMRKDMPELIKKLARIPGVRDIAMTTNGSLLPVYAEKLKNAGLHRVTVS 130 >gi|296132280|ref|YP_003639527.1| molybdenum cofactor biosynthesis protein A [Thermincola sp. JR] gi|296030858|gb|ADG81626.1| molybdenum cofactor biosynthesis protein A [Thermincola potens JR] Length = 326 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 6/95 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +C +C + +++++ +I+ G ++ R LTG Sbjct: 10 NYLRVSVTDRCNYRCVYCMPAEGVPMHCRDEILSLEEILKVIKSSTKLGIRKIR---LTG 66 Query: 93 GEPLLQVD-VPLIQALNKRGF--EIAVETNGTIEP 124 GEPL++ + L+Q + + +IA+ TNG + P Sbjct: 67 GEPLVRKGIINLVQGIARIPQIDDIALTTNGALLP 101 >gi|206895115|ref|YP_002246513.1| tungsten-containing aldehyde ferredoxin oxidoreductase cofactor-modifying protein [Coprothermobacter proteolyticus DSM 5265] gi|206737732|gb|ACI16810.1| tungsten-containing aldehyde ferredoxin oxidoreductase cofactor-modifying protein [Coprothermobacter proteolyticus DSM 5265] Length = 356 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 18/93 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C T+ + + +++E ++ Sbjct: 30 CNL-----------ACAMC-FRHTYEDHTR-ALMDEKTVQKMLQEVV---NSPAEEVIIG 73 Query: 92 G-GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 G GEPL+ +++ L + + TNGT+ Sbjct: 74 GIGEPLMHPLWKNVVKELKNAYKRVTITTNGTL 106 >gi|217973237|ref|YP_002357988.1| Radical SAM domain-containing protein [Shewanella baltica OS223] gi|217498372|gb|ACK46565.1| Radical SAM domain protein [Shewanella baltica OS223] Length = 298 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 13/103 (12%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCV 89 NL + C CDT + Y V+++ ++ Q Sbjct: 72 NLNNKPRIQWDKNCCSQCDTCLAVCPKQASPKVTHYTVEEILGILHRQR----HFINGIT 127 Query: 90 LTGGEPLLQV--DVPLIQALNK----RGFEIAVETNGTIEPPQ 126 ++GGE LQ+ + L + + ++TNG++ Sbjct: 128 VSGGEASLQLPFIIELFKGIKATESLSHLTCMLDTNGSLSLTG 170 >gi|14520911|ref|NP_126386.1| molybdenum cofactor biosynthesis MoaA [Pyrococcus abyssi GE5] gi|5458128|emb|CAB49617.1| moaA-like intein containing molybdenum cofactor biosynthesis moaA homolog [Pyrococcus abyssi GE5] Length = 1042 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF 112 F +G ++Q+ ++ TGGEP L+ D+ +I+ + G+ Sbjct: 613 FYAREGEPIYEPTLEQIRMMLRNAKKEHPIGANAVQFTGGEPTLRDDLIEIIKIAKEEGY 672 Query: 113 -EIAVETNG 120 + + T+G Sbjct: 673 DHVQLNTDG 681 >gi|325294454|ref|YP_004280968.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064902|gb|ADY72909.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 222 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Query: 87 YCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE 123 +++GGEP L+ + ++ + GF + V+TNGT Sbjct: 75 LIIISGGEPTLEKKLEEGLRFIRSLGFSVRVDTNGTNP 112 >gi|325262819|ref|ZP_08129555.1| molybdenum cofactor biosynthesis protein A [Clostridium sp. D5] gi|324031913|gb|EGB93192.1| molybdenum cofactor biosynthesis protein A [Clostridium sp. D5] Length = 306 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 8/113 (7%) Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGF-EIAVETNGTI 122 + A+++ I ++ LTGGEPL++ + L+ L + G E+ + TNG + Sbjct: 13 EILTYAEIVRVCRICADEGISRIKLTGGEPLVRKGISSLLYELRQINGIEEVTLTTNGVL 72 Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVNVSPENYIGFDFERFSLQ 174 + ID + KAG D L + + Q+ E + +LQ Sbjct: 73 -LAEQIDSLA---KAGLDAVNISLDTLEREQYAQITRRDELERALEGLEAALQ 121 >gi|299132741|ref|ZP_07025936.1| Radical SAM domain protein [Afipia sp. 1NLS2] gi|298592878|gb|EFI53078.1| Radical SAM domain protein [Afipia sp. 1NLS2] Length = 473 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 18/95 (18%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL G C ++ ++++ I E Sbjct: 73 TQRCNLDCG--------AC------YLSEHSEAVKDLPLEEVYRRI-ELIRETYGSDVDV 117 Query: 89 VLTGGEPLLQVDVPLI---QALNKRGFEIAVETNG 120 +TGG+P L+ LI + L + G A+ TNG Sbjct: 118 QVTGGDPTLRKRDELIAIVRRLREIGMRPALFTNG 152 >gi|294637694|ref|ZP_06715971.1| radical SAM enzyme, Cfr family [Edwardsiella tarda ATCC 23685] gi|291089124|gb|EFE21685.1| radical SAM enzyme, Cfr family [Edwardsiella tarda ATCC 23685] Length = 411 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I Q +TG + V+ G Sbjct: 145 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAQKVTGNRPITNVVMMG 204 Query: 93 -GEPLLQ--VDVPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL +P ++ L+ GF + + T+G + + D I V Sbjct: 205 MGEPLLNMTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 255 >gi|284928671|ref|YP_003421193.1| hopanoid biosynthesis associated radical SAM protein HpnH [cyanobacterium UCYN-A] gi|284809130|gb|ADB94835.1| hopanoid biosynthesis associated radical SAM protein HpnH [cyanobacterium UCYN-A] Length = 338 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 + GGEPLL + +++ L KR + + TN + + + SP + Sbjct: 72 GAPVVSIPGGEPLLHPQIDEIVEGLVKRKKFVYLCTN-ALLLEKSLHKFKPSPYFAFSVH 130 Query: 143 IKGGQE 148 + G +E Sbjct: 131 LDGLEE 136 >gi|332180111|gb|AEE15799.1| Radical SAM domain protein [Treponema brennaborense DSM 12168] Length = 418 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 20/76 (26%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN W C F D K + ++++L D I + G T Sbjct: 95 CNCW----------HCSFAD-------RIKKNKLSMEELKDAIRQMQDLG---TSMIGFT 134 Query: 92 GGEPLLQVDVPLIQAL 107 GGEPLL+ D+P I +L Sbjct: 135 GGEPLLRKDMPEILSL 150 >gi|326391536|ref|ZP_08213068.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325992417|gb|EGD50877.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 441 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 23/112 (20%) Query: 27 CRFSGCNLWSGREQDR-------LSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 RF NLW R D+ + C F C + + ++ + +++ I E Sbjct: 76 LRF---NLWRSRFNDKNLGLTIAPTLGCNFAC--VYCYEKDSQKNVFMSEEVQRKIIEYI 130 Query: 79 ITGEKEGRYCVLT--GGEPLLQVDV-----PLIQALNKRG---FEIAVETNG 120 K + +T GGEPLL D+ I L + ++ TNG Sbjct: 131 KRQIKYLQSVNITWYGGEPLLAFDIVKDMSEKIIKLCDENEVIYGASIVTNG 182 >gi|311106145|ref|YP_003978998.1| molybdenum cofactor biosynthesis protein A 1 [Achromobacter xylosoxidans A8] gi|310760834|gb|ADP16283.1| molybdenum cofactor biosynthesis protein A 1 [Achromobacter xylosoxidans A8] Length = 332 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 8/85 (9%) Query: 41 DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR +C +C DF G + T +++A L+ G + R LTGGEPLL+ Sbjct: 27 DRCDLRCSYCLPKDFKGFE-TPANWLRHEEMARLVGLFVGLGVSKVR---LTGGEPLLRR 82 Query: 100 DVPLIQALNKR--GFE-IAVETNGT 121 + + + G + ++V TNGT Sbjct: 83 GLAGLAGVIAAMPGLKDLSVSTNGT 107 >gi|303233487|ref|ZP_07320150.1| radical SAM domain protein [Finegoldia magna BVS033A4] gi|302495387|gb|EFL55130.1| radical SAM domain protein [Finegoldia magna BVS033A4] Length = 729 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 33/105 (31%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL- 90 CNL +C +C ++ + + + + D I+ +L Sbjct: 33 CNL-----------RCSYC---YITHKSSN-KKMSFDVAKRFIDYVLSDKIVRPNGVILD 77 Query: 91 -TGGEPLLQVDVPLIQALNKR--------------GFEIAVETNG 120 GGEPLL ++ LI + + I + TNG Sbjct: 78 FIGGEPLL--EIKLIDQICDYFKLKTYILNDEWYWDYRINITTNG 120 >gi|302543321|ref|ZP_07295663.1| radical SAM [Streptomyces hygroscopicus ATCC 53653] gi|302460939|gb|EFL24032.1| radical SAM [Streptomyces himastatinicus ATCC 53653] Length = 393 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 22/88 (25%), Gaps = 20/88 (22%) Query: 20 AGRVAVFCRF----------SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69 AG R S CNL A + D ++ Sbjct: 7 AGVP----RLPFREFLLKVHSRCNLACDHCYVYQGADQSWRDQPRA------MAWPTAER 56 Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLL 97 I + +L GGEPLL Sbjct: 57 ACRRIADHAAAHRLPSVRVLLHGGEPLL 84 >gi|288940317|ref|YP_003442557.1| molybdenum cofactor biosynthesis protein A [Allochromatium vinosum DSM 180] gi|288895689|gb|ADC61525.1| molybdenum cofactor biosynthesis protein A [Allochromatium vinosum DSM 180] Length = 328 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 6/71 (8%) Query: 41 DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR +C +C F G + + +++ ++ G + R LTGGEPL++ Sbjct: 23 DRCDLRCGYCLPKGFKGFE-EPAHWLSFEEIERVVAAFTALGVRRVR---LTGGEPLMRR 78 Query: 100 -DVPLIQALNK 109 L L+ Sbjct: 79 GLTELAARLSA 89 >gi|212704636|ref|ZP_03312764.1| hypothetical protein DESPIG_02699 [Desulfovibrio piger ATCC 29098] gi|212672035|gb|EEB32518.1| hypothetical protein DESPIG_02699 [Desulfovibrio piger ATCC 29098] Length = 335 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 6/85 (7%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + V + ++I I LTGGEP + Sbjct: 23 DRCNLRCLYC---HSNARHQCIPHEKVLRYEEMIRLVQIVRGMGVGKVRLTGGEPFARKG 79 Query: 101 -VPLIQALNKR--GFEIAVETNGTI 122 + L +R +I + TNGT+ Sbjct: 80 CDDFLLRLRQRFDDLDIRITTNGTL 104 >gi|170782849|ref|YP_001711183.1| molybdenum cofactor biosynthesis protein A [Clavibacter michiganensis subsp. sepedonicus] gi|169157419|emb|CAQ02608.1| molybdenum cofactor biosynthesis protein A [Clavibacter michiganensis subsp. sepedonicus] Length = 361 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 19/89 (21%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVD----QLADLIEEQWITGEKE--GRYCVLTGGE 94 DR + +C +C +G + D QLA+ IE G ++ R TGGE Sbjct: 44 DRCNLRCTYC-------MPAEGLPFTPDRQALQLAE-IERLVRIGTRDLGVRQVRFTGGE 95 Query: 95 PLLQVDV----PLIQALNKRGFEIAVETN 119 PLL+ D+ AL R EI++ TN Sbjct: 96 PLLRRDLIEIIAACAALPDRP-EISLTTN 123 >gi|168209976|ref|ZP_02635601.1| 4Fe-4S binding domain protein/radical SAM domain protein [Clostridium perfringens B str. ATCC 3626] gi|170711934|gb|EDT24116.1| 4Fe-4S binding domain protein/radical SAM domain protein [Clostridium perfringens B str. ATCC 3626] Length = 273 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 45/164 (27%) Query: 25 VFCRFSGCNLWS------------------------------GREQDRLSAQCRFCD--T 52 +F F GCN + +C CD Sbjct: 22 IF--FQGCNFKCLYCHNPETINKCISCGKCVENCEVGALSISDGKVIWDEEECISCDKCI 79 Query: 53 DFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNK 109 + Y+V++L IE+ R ++GGE L + L + + K Sbjct: 80 KLCEHMSSPKLKEYSVEELVKKIEK----DSFFIRGITVSGGECTLNSEFLIKLFREVKK 135 Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153 G V+TNG + + I ++ K D+K E + ++ Sbjct: 136 LGLTCFVDTNGNTKLDDEL--INLTDKFMLDVK--SIDEKENIW 175 >gi|148273530|ref|YP_001223091.1| molybdenum cofactor biosynthesis protein A [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831460|emb|CAN02420.1| putative molybdenum cofactor biosynthesis protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 352 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 19/89 (21%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVD----QLADLIEEQWITGEKE--GRYCVLTGGE 94 DR + +C +C +G + D QLA+ IE G ++ R TGGE Sbjct: 35 DRCNLRCTYC-------MPAEGLPFTPDRQALQLAE-IERLVRIGTRDLGVRQVRFTGGE 86 Query: 95 PLLQVDV----PLIQALNKRGFEIAVETN 119 PLL+ D+ AL R EI++ TN Sbjct: 87 PLLRRDLIEIIAACAALPDRP-EISLTTN 114 >gi|121612497|ref|YP_999886.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni subsp. jejuni 81-176] gi|157414478|ref|YP_001481734.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni subsp. jejuni 81116] gi|167004852|ref|ZP_02270610.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni subsp. jejuni 81-176] gi|218561842|ref|YP_002343621.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|24212020|sp|Q9PIW6|MOAA_CAMJE RecName: Full=Molybdenum cofactor biosynthesis protein A gi|166217244|sp|A1VXP5|MOAA_CAMJJ RecName: Full=Molybdenum cofactor biosynthesis protein A gi|172047012|sp|A8FJX0|MOAA_CAMJ8 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|87250305|gb|EAQ73263.1| molybdenum cofactor biosynthesis protein [Campylobacter jejuni subsp. jejuni 81-176] gi|112359548|emb|CAL34332.1| putative molybdenum cofactor biosynthesis protein A [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|157385442|gb|ABV51757.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni subsp. jejuni 81116] gi|284925454|gb|ADC27806.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni subsp. jejuni IA3902] gi|307747121|gb|ADN90391.1| Molybdenum cofactor biosynthesis protein A [Campylobacter jejuni subsp. jejuni M1] Length = 320 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 6/91 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N R + +C +C K + ++L ++ G ++ R +TG Sbjct: 11 NYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLSFEELFLFVKAAIDEGIEKIR---ITG 67 Query: 93 GEPLLQVDVP-LIQALNK--RGFEIAVETNG 120 GEPLL+ D+ I+ ++ ++A+ TNG Sbjct: 68 GEPLLRKDLSIFIKMISDYKSDIDLAITTNG 98 >gi|240102652|ref|YP_002958961.1| Radical-activating enzyme, pyruvate formate-lyase related [Thermococcus gammatolerans EJ3] gi|239910206|gb|ACS33097.1| Radical-activating enzyme, pyruvate formate-lyase related [Thermococcus gammatolerans EJ3] Length = 361 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 15/105 (14%) Query: 31 GCNLWSGREQDRL------SAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 GC L E+ L C +C + + V + D+IEE I K Sbjct: 18 GCQLCVRGEKLVLFTTGICPRNCFYCPLSPWRREDVVYANERPVKSVDDIIEEALIQEAK 77 Query: 84 EGRYCVLTGGEPLLQVDVPL--IQALNK---RGFEIAVETNGTIE 123 +TGG+PL ++D + I+AL + R F + + T G + Sbjct: 78 GAG---VTGGDPLARLDRTVSYIRALKEAFGRKFHVHLYTTGALA 119 >gi|229157174|ref|ZP_04285254.1| Anaerobic ribonucleoside-triphosphate reductase activating protein [Bacillus cereus ATCC 4342] gi|228626238|gb|EEK82985.1| Anaerobic ribonucleoside-triphosphate reductase activating protein [Bacillus cereus ATCC 4342] Length = 147 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 25/86 (29%) Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDTDFVGIQGTKGGRYNVDQLADL 73 GEG VF F+GC + S C G ++++ + Sbjct: 11 GEGLRT---VVF--FAGCPHRCFGCHNPKSWNIC-------------NGIEMTLEEIVEE 52 Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQV 99 I +GG+P LQ Sbjct: 53 I------ASNPLTDVTFSGGDPFLQA 72 >gi|209524542|ref|ZP_03273090.1| Radical SAM domain protein [Arthrospira maxima CS-328] gi|209495000|gb|EDZ95307.1| Radical SAM domain protein [Arthrospira maxima CS-328] Length = 355 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 7/66 (10%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 + +D++ D I + + L GGEPLL ++ +I+ L + G + V TNG + Sbjct: 53 HELDRIVDQISSIDV------KVVFLAGGEPLLIRNLEYVIRQLAQTGVSVFVNTNGILL 106 Query: 124 PPQGID 129 + ID Sbjct: 107 TEKRID 112 >gi|149182979|ref|ZP_01861435.1| hypothetical protein BSG1_13476 [Bacillus sp. SG-1] gi|148849316|gb|EDL63510.1| hypothetical protein BSG1_13476 [Bacillus sp. SG-1] Length = 375 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 12/84 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q ++ + ++E R +TGGEP++ Sbjct: 46 RCNHCAVGYT-LQNKDPEALPMELIFRRLDEV-----SHLRTISITGGEPMMSKKSVENH 99 Query: 101 -VPLIQALNKRGFEIAVETNGTIE 123 +PL++ + RG + + +N T+ Sbjct: 100 VLPLLKYAHSRGVKTQINSNLTLP 123 >gi|119872338|ref|YP_930345.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM 4184] gi|119673746|gb|ABL88002.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184] Length = 373 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 16/73 (21%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F F+GCN +C +C + G + LA + G K Sbjct: 153 TIF--FTGCNF-----------RCVYCQNWDISQYPEAGVEVTAEALAAIQVRLREEGAK 199 Query: 84 EGRYCVLTGGEPL 96 + GGEP Sbjct: 200 NINWV---GGEPT 209 >gi|121997762|ref|YP_001002549.1| putative oxygen-independent coproporphyrinogen III oxidase [Halorhodospira halophila SL1] gi|121589167|gb|ABM61747.1| coproporphyrinogen III oxidase, anaerobic [Halorhodospira halophila SL1] Length = 408 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 9/96 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91 L +C +CD + ++G R VD L + Q V + Sbjct: 11 PLAVYIHLPWCLQRCGYCDFNAHALRGELPARAYVDALGRELRRQAPAALGRRVTSVFIG 70 Query: 92 GGEPLLQVDVP---LIQAL-----NKRGFEIAVETN 119 GG P L P L+ L + G EI +E N Sbjct: 71 GGTPSLFPPGPIGELLDTLDAVLGLESGAEITLEAN 106 >gi|313673007|ref|YP_004051118.1| radical sam domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939763|gb|ADR18955.1| Radical SAM domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 354 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 25/115 (21%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 S CNL + + G++ +++ L+++ E Sbjct: 15 TSKCNLKCVHCRSSSDIH-------------SPEGKFTLERCYKLMDD---ISEFAKPVI 58 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ--------GIDWICVS 134 VL+GGEPLL+ D+ + ++GF + + TNG + + GI + +S Sbjct: 59 VLSGGEPLLRKDLFDIANYGTEKGFRMCMATNGVLVNDEICRKIKESGIKIVSLS 113 >gi|260887953|ref|ZP_05899216.1| molybdenum cofactor biosynthesis protein A [Selenomonas sputigena ATCC 35185] gi|260862306|gb|EEX76806.1| molybdenum cofactor biosynthesis protein A [Selenomonas sputigena ATCC 35185] Length = 301 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNGTI 122 ++ +++ + R LTGGEPLL+ V L++ + G E +A+ TNG + Sbjct: 13 DILSFEEIVRVVRALAQLGIRKVRLTGGEPLLRRGVVDLVREIKAVEGIERVALTTNGVL 72 >gi|210621800|ref|ZP_03292829.1| hypothetical protein CLOHIR_00774 [Clostridium hiranonis DSM 13275] gi|210154564|gb|EEA85570.1| hypothetical protein CLOHIR_00774 [Clostridium hiranonis DSM 13275] Length = 454 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 36/108 (33%) Query: 31 GCNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRY--NVDQLADLIEEQWITGEKEG 85 GCN+ D SA C C G + +++ + +I + G Sbjct: 104 GCNVPWAILLDPTSACNMHCTGC------WAAEYGNKLNLSLETIDSIIRQGKEMGTYMY 157 Query: 86 RYCVLTGGEPL-----------LQVDVPLIQALNKRGFEIAVETNGTI 122 + TGGEPL + D + TNG++ Sbjct: 158 ---IYTGGEPLVRKDDLMKICEMHPDCAFLAF-----------TNGSL 191 >gi|169831502|ref|YP_001717484.1| radical SAM domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169638346|gb|ACA59852.1| Radical SAM domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 334 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 18/96 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + + + LI+E + + + Sbjct: 11 CNL-----------ACAHC---YRDAGQKAEDELSTAEGKALIDE---IAGAGFKIMIFS 53 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 GGEPL++ D+ LI RG + +NGT+ P+ Sbjct: 54 GGEPLMRPDIYDLIAYAASRGLRPVLGSNGTLITPE 89 >gi|85813796|emb|CAF31849.1| putative oxidoreductase [Streptomyces hygroscopicus subsp. hygroscopicus] Length = 343 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 18/93 (19%) Query: 78 WITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGF--EIAVETNGTIEPPQGID-WICV 133 + R+ + GGEPLL VPL+ + G V TNG + P D W V Sbjct: 54 LLARSFRARFVKVLGGEPLLHPELVPLLNLVRDSGIAPHTTVCTNGLLLPRMRDDFWAAV 113 Query: 134 SPKAGCDLKIKGGQELKL-VFPQVNVSPENYIG 165 E+++ V+P + E G Sbjct: 114 -------------DEVEISVYPDRELPEEKMAG 133 >gi|146297294|ref|YP_001181065.1| radical SAM domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410870|gb|ABP67874.1| Radical SAM domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 347 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C ++ + D + I + E + Sbjct: 19 CNL-----------RCNYC----SNDDNFYASSLSL-SIEDCKKVIDILHKTEVFRINIE 62 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEP L+ D+ +I LN++G+ + TNGT+ Sbjct: 63 GGEPFLRNDLLEIIGYLNEKGYIPKITTNGTL 94 >gi|302388859|ref|YP_003824680.1| GTP cyclohydrolase subunit MoaA [Thermosediminibacter oceani DSM 16646] gi|302199487|gb|ADL07057.1| GTP cyclohydrolase subunit MoaA [Thermosediminibacter oceani DSM 16646] Length = 324 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 16/135 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + + T +++A +E G R +TGGEPL++ Sbjct: 18 DRCNFRCIYCMPEGGVMPKTCADILRFEEIARFLEAIVPLGISTVR---ITGGEPLVRKG 74 Query: 101 VP-LIQALNKRG--FEIAVETNGTIEPPQGIDW---------ICV-SPKAGCDLKIKGGQ 147 + ++ + + +IA+ TNG++ D I + S + ++ G Sbjct: 75 IADFVRMVRRIPGVKDIAMTTNGSLLAGMAADLKSAGLNRVNISLDSLRPERFGRVTRGG 134 Query: 148 ELKLVFPQVNVSPEN 162 +LK V ++ + EN Sbjct: 135 DLKSVLKGIDAALEN 149 >gi|294996631|ref|ZP_06802322.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis 210] Length = 331 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 16/89 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C T +++ ++ E G +E LT Sbjct: 88 CNLC-----------CDYC--CVSSSPSTPHRELGAERIGRIVGEAARWGVRELF---LT 131 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GGEP L D+ I A + V TNG Sbjct: 132 GGEPFLLPDIDTIIATCVKQLPTTVLTNG 160 >gi|215445868|ref|ZP_03432620.1| MoaA-related protein [Mycobacterium tuberculosis T85] gi|289757792|ref|ZP_06517170.1| molybdopterin biosynthesis protein MoeX [Mycobacterium tuberculosis T85] gi|289713356|gb|EFD77368.1| molybdopterin biosynthesis protein MoeX [Mycobacterium tuberculosis T85] gi|326903295|gb|EGE50228.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis W-148] Length = 330 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 16/89 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C T +++ ++ E G +E LT Sbjct: 87 CNLC-----------CDYC--CVSSSPSTPHRELGAERIGRIVGEAARWGVRELF---LT 130 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GGEP L D+ I A + V TNG Sbjct: 131 GGEPFLLPDIDTIIATCVKQLPTTVLTNG 159 >gi|312623527|ref|YP_004025140.1| Radical SAM domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] gi|312203994|gb|ADQ47321.1| Radical SAM domain protein [Caldicellulosiruptor kronotskyensis 2002] Length = 194 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 29/104 (27%) Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 Y + TL G G G GC S +C+ C + + K Sbjct: 11 YPV----YTL-GPGKRVGIW-----LQGC-----------SIRCKGCMSSHTW-EFDKSR 48 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107 ++Q+A++++ + ++GGEP Q VPL+ L Sbjct: 49 AIKIEQVANVLKSFG------CKRLTISGGEPFDQ-HVPLLILL 85 >gi|149186315|ref|ZP_01864628.1| molybdenum cofactor biosynthesis protein A [Erythrobacter sp. SD-21] gi|148829904|gb|EDL48342.1| molybdenum cofactor biosynthesis protein A [Erythrobacter sp. SD-21] Length = 345 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 15/105 (14%) Query: 41 DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C FV G + ++L + G + R LTGGEP ++ Sbjct: 39 DRCNFRCSYCLPNGFVKQDGLPPE-LSREELRRAVSAFARLGLWKLR---LTGGEPTVRR 94 Query: 100 DVPLIQALNK--RGF-EIAVETNG-------TIEPPQGIDWICVS 134 D I G +A+ TNG T G+D + VS Sbjct: 95 DFTEIARYLASVEGIRRVAMTTNGYRLAREATAWRAAGVDAVNVS 139 >gi|90418074|ref|ZP_01225986.1| molybdenum cofactor biosynthesis protein [Aurantimonas manganoxydans SI85-9A1] gi|90337746|gb|EAS51397.1| molybdenum cofactor biosynthesis protein [Aurantimonas manganoxydans SI85-9A1] Length = 352 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ K +++L L G ++ R LTGGEPL+ Sbjct: 41 DRCDFRCVYCMAEDMTFL----PKRDLLTLEELDRLSSAFIAKGVRKLR---LTGGEPLV 93 Query: 98 QVDV-PLIQALNKRGFEIAVE-----TNGT 121 + ++ L+++L++ A+E TNG+ Sbjct: 94 RKNIMHLVRSLSRHLESGALEELTLTTNGS 123 >gi|21672314|ref|NP_660381.1| hypothetical protein BUsg020 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|22654299|sp|Q44634|Y020_BUCAP RecName: Full=Uncharacterized KamA family protein BUsg_020 gi|21622913|gb|AAM67592.1| hypothetical 38.7 kDa protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 337 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 40 QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 + + CR+C + KG + N Q+ I + E +L+GG+PL+ Sbjct: 118 KTNCAINCRYCFRKHFPYEKNKGNKKNWIQILHYISQNIELNE-----VILSGGDPLMAK 172 Query: 100 DVPLI 104 D L+ Sbjct: 173 DHELL 177 >gi|300789683|ref|YP_003769974.1| pyrroloquinoline quinone biosynthesis protein E [Amycolatopsis mediterranei U32] gi|299799197|gb|ADJ49572.1| pyrroloquinoline quinone biosynthesis protein E [Amycolatopsis mediterranei U32] Length = 354 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 6/80 (7%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R C +C + + ++ + G + +GGEPLL+ D+ Sbjct: 16 RCPLHCPYCSNPVELT--ARDAELSTSDWLSVLSQARELGVLQVHM---SGGEPLLRPDL 70 Query: 102 P-LIQALNKRGFEIAVETNG 120 P L+ + G + + T+G Sbjct: 71 PELVAHASGLGCYVNLVTSG 90 >gi|294791611|ref|ZP_06756759.1| radical SAM domain protein [Veillonella sp. 6_1_27] gi|294456841|gb|EFG25203.1| radical SAM domain protein [Veillonella sp. 6_1_27] Length = 463 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 26/112 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ--LADLIEEQWITGEKEGRYCV 89 CNL C++C F G + + +A + I ++C Sbjct: 101 CNL-----------ACKYC---FASQGDYGGVKRELMSFDVAKRAVDFLIKMSGSRQHCE 146 Query: 90 LT--GGEPLLQVD--------VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 + GGEPLL D + IQ + + F++ + TNG + ID++ Sbjct: 147 IDFFGGEPLLNWDVVKQTVEYIESIQEKHNKIFKLTLTTNGMLLTQDKIDYV 198 >gi|238921042|ref|YP_002934557.1| ribosomal RNA large subunit methyltransferase N [Edwardsiella ictaluri 93-146] gi|259491987|sp|C5BET4|RLMN_EDWI9 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|238870611|gb|ACR70322.1| radical SAM enzyme, Cfr family [Edwardsiella ictaluri 93-146] Length = 390 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I Q +TG + V+ G Sbjct: 124 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAQKVTGNRPITNVVMMG 183 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + +P ++ L+ GF + + T+G + + D I V Sbjct: 184 MGEPLLNLTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDTIDV 234 >gi|225016179|ref|ZP_03705383.1| hypothetical protein CLOSTMETH_00094 [Clostridium methylpentosum DSM 5476] gi|224951052|gb|EEG32261.1| hypothetical protein CLOSTMETH_00094 [Clostridium methylpentosum DSM 5476] Length = 370 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 15/98 (15%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL+ R + C C + ++ + + G L Sbjct: 77 CNLFCKGCYARANGTC--C-------EERSDPLLTAEEWDSIFCQASELGIGFHL---LA 124 Query: 92 GGEPLLQVDVPLIQALN-KRGFEIAVETNGTIEPPQGI 128 GGEPLL+ +V L A + + F I TNGT+ P + Sbjct: 125 GGEPLLRREVLLRAAQHPETIFPIF--TNGTMLDPSCL 160 >gi|15608819|ref|NP_216197.1| molybdopterin biosynthesis protein MoeX [Mycobacterium tuberculosis H37Rv] gi|31792867|ref|NP_855360.1| molybdopterin biosynthesis protein MoeX [Mycobacterium bovis AF2122/97] gi|121637588|ref|YP_977811.1| putative molybdopterin biosynthesis protein moeX [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661478|ref|YP_001283001.1| molybdopterin biosynthesis protein MoeX [Mycobacterium tuberculosis H37Ra] gi|148822889|ref|YP_001287643.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis F11] gi|167969201|ref|ZP_02551478.1| MoaA-related protein [Mycobacterium tuberculosis H37Ra] gi|215404016|ref|ZP_03416197.1| MoaA-related protein [Mycobacterium tuberculosis 02_1987] gi|215411328|ref|ZP_03420136.1| MoaA-related protein [Mycobacterium tuberculosis 94_M4241A] gi|215427004|ref|ZP_03424923.1| MoaA-related protein [Mycobacterium tuberculosis T92] gi|215430573|ref|ZP_03428492.1| MoaA-related protein [Mycobacterium tuberculosis EAS054] gi|219557602|ref|ZP_03536678.1| MoaA-related protein [Mycobacterium tuberculosis T17] gi|224990063|ref|YP_002644750.1| putative molybdopterin biosynthesis protein [Mycobacterium bovis BCG str. Tokyo 172] gi|254364522|ref|ZP_04980568.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis str. Haarlem] gi|254550690|ref|ZP_05141137.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289443138|ref|ZP_06432882.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis T46] gi|289447293|ref|ZP_06437037.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis CPHL_A] gi|289554545|ref|ZP_06443755.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis KZN 605] gi|289569728|ref|ZP_06449955.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis T17] gi|289574349|ref|ZP_06454576.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis K85] gi|289745882|ref|ZP_06505260.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis 02_1987] gi|289750237|ref|ZP_06509615.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis T92] gi|289753772|ref|ZP_06513150.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis EAS054] gi|298525180|ref|ZP_07012589.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis 94_M4241A] gi|2326724|emb|CAB10938.1| POSSIBLE MOLYBDOPTERIN BIOSYNTHESIS PROTEIN MOEX [Mycobacterium tuberculosis H37Rv] gi|31618457|emb|CAD96375.1| POSSIBLE MOLYBDOPTERIN BIOSYNTHESIS PROTEIN MOEX [Mycobacterium bovis AF2122/97] gi|121493235|emb|CAL71706.1| Possible molybdopterin biosynthesis protein moeX [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134150036|gb|EBA42081.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis str. Haarlem] gi|148505630|gb|ABQ73439.1| molybdopterin biosynthesis protein MoeX [Mycobacterium tuberculosis H37Ra] gi|148721416|gb|ABR06041.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis F11] gi|224773176|dbj|BAH25982.1| putative molybdopterin biosynthesis protein [Mycobacterium bovis BCG str. Tokyo 172] gi|289416057|gb|EFD13297.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis T46] gi|289420251|gb|EFD17452.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis CPHL_A] gi|289439177|gb|EFD21670.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis KZN 605] gi|289538780|gb|EFD43358.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis K85] gi|289543482|gb|EFD47130.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis T17] gi|289686410|gb|EFD53898.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis 02_1987] gi|289690824|gb|EFD58253.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis T92] gi|289694359|gb|EFD61788.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis EAS054] gi|298494974|gb|EFI30268.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis 94_M4241A] gi|328459031|gb|AEB04454.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis KZN 4207] Length = 330 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 16/89 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C T +++ ++ E G +E LT Sbjct: 87 CNLC-----------CDYC--CVSSSPSTPHRELGAERIGRIVGEAARWGVRELF---LT 130 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GGEP L D+ I A + V TNG Sbjct: 131 GGEPFLLPDIDTIIATCVKQLPTTVLTNG 159 >gi|15841138|ref|NP_336175.1| MoaA-related protein [Mycobacterium tuberculosis CDC1551] gi|253799280|ref|YP_003032281.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis KZN 1435] gi|254231876|ref|ZP_04925203.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis C] gi|260186631|ref|ZP_05764105.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis CPHL_A] gi|260200745|ref|ZP_05768236.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis T46] gi|260204950|ref|ZP_05772441.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis K85] gi|297634233|ref|ZP_06952013.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis KZN 4207] gi|297731220|ref|ZP_06960338.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis KZN R506] gi|306775866|ref|ZP_07414203.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu001] gi|306779684|ref|ZP_07418021.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu002] gi|306784417|ref|ZP_07422739.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu003] gi|306788784|ref|ZP_07427106.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu004] gi|306793119|ref|ZP_07431421.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu005] gi|306797499|ref|ZP_07435801.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu006] gi|306803380|ref|ZP_07440048.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu008] gi|306971975|ref|ZP_07484636.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu010] gi|307084264|ref|ZP_07493377.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu012] gi|313658552|ref|ZP_07815432.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis KZN V2475] gi|13881356|gb|AAK45989.1| MoaA-related protein [Mycobacterium tuberculosis CDC1551] gi|124600935|gb|EAY59945.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis C] gi|253320783|gb|ACT25386.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis KZN 1435] gi|308215618|gb|EFO75017.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu001] gi|308327336|gb|EFP16187.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu002] gi|308330778|gb|EFP19629.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu003] gi|308334601|gb|EFP23452.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu004] gi|308338388|gb|EFP27239.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu005] gi|308342111|gb|EFP30962.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu006] gi|308349900|gb|EFP38751.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu008] gi|308358496|gb|EFP47347.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu010] gi|308366120|gb|EFP54971.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis SUMu012] gi|323719771|gb|EGB28885.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis CDC1551A] Length = 331 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 16/89 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C T +++ ++ E G +E LT Sbjct: 88 CNLC-----------CDYC--CVSSSPSTPHRELGAERIGRIVGEAARWGVRELF---LT 131 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG 120 GGEP L D+ I A + V TNG Sbjct: 132 GGEPFLLPDIDTIIATCVKQLPTTVLTNG 160 >gi|289596414|ref|YP_003483110.1| Radical SAM domain protein [Aciduliprofundum boonei T469] gi|289534201|gb|ADD08548.1| Radical SAM domain protein [Aciduliprofundum boonei T469] Length = 312 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 9/82 (10%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100 R + QC FC + + + +I+ E L GGEP L+ D Sbjct: 31 RCNMQCPFC-----NVWNDRTPELPTKDVFKIIDRL---AESTVTVLSLEGGEPTLRKDI 82 Query: 101 VPLIQALNKRGFEIAVETNGTI 122 + +I+ + + F + + TNGT+ Sbjct: 83 LDIIKYAHDQSFYLFMTTNGTL 104 >gi|296108949|ref|YP_003615898.1| Wyosine base formation domain protein [Methanocaldococcus infernus ME] gi|295433763|gb|ADG12934.1| Wyosine base formation domain protein [Methanocaldococcus infernus ME] Length = 305 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 34/113 (30%), Gaps = 25/113 (22%) Query: 32 CNLWSGREQDRLSAQCRFC------DTDFVGIQGTKGGRYNVDQ---------------- 69 C + C FC D D + + V Sbjct: 48 C-VQCTPSVIWCQQSCIFCWRVLPRDLDIDEFPSPEWEKPEVVAEKILELHKKAIMGYKG 106 Query: 70 LADLIEEQWITGEKEGRYCVLT-GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 + D + E+ ++ L+ GEP L + LI+ +GF + +NG Sbjct: 107 ILDRVGEKKFEEALNPKHIALSLSGEPTLYPYIDELIEIFKDKGFTTFLVSNG 159 >gi|255318717|ref|ZP_05359944.1| molybdenum cofactor biosynthesis protein A [Acinetobacter radioresistens SK82] gi|262378102|ref|ZP_06071259.1| molybdenum cofactor biosynthesis protein A [Acinetobacter radioresistens SH164] gi|255304215|gb|EET83405.1| molybdenum cofactor biosynthesis protein A [Acinetobacter radioresistens SK82] gi|262299387|gb|EEY87299.1| molybdenum cofactor biosynthesis protein A [Acinetobacter radioresistens SH164] Length = 347 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 17/91 (18%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY----CVLTGGEPL 96 DR + +C +C L EE + + R+ +TGGEPL Sbjct: 27 DRCNFKCVYC-------MPEHPEWMKKQDLLS-FEELYQFCDFMVRHGIEAIRITGGEPL 78 Query: 97 LQVD----VPLIQALNKRGF-EIAVETNGTI 122 ++ V +QAL K G I++ TNG Sbjct: 79 MRQGVVHFVEQLQALRKLGLKRISMTTNGHY 109 >gi|253582979|ref|ZP_04860197.1| radical SAM domain-containing protein [Fusobacterium varium ATCC 27725] gi|251835185|gb|EES63728.1| radical SAM domain-containing protein [Fusobacterium varium ATCC 27725] Length = 341 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 23/95 (24%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + T +++ I + + +L Sbjct: 18 CNL-----------KCKYC---YAQPVFTH-ELMSLETAKKAIN----LCKDKDFTLILA 58 Query: 92 GGEPLL--QVDVPLIQALNKRGF--EIAVETNGTI 122 GGEPLL +V L Q L + G+ +I +++NGT+ Sbjct: 59 GGEPLLNFKVIEKLYQYLKENGYKCKIGLQSNGTL 93 >gi|258405933|ref|YP_003198675.1| Radical SAM domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257798160|gb|ACV69097.1| Radical SAM domain protein [Desulfohalobium retbaense DSM 5692] Length = 442 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 16/104 (15%) Query: 30 SGCNLWSGREQDRLSAQCR-----------FCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 +GC G + C C F + G ++D LA + Sbjct: 73 AGCPFDCGLCPNHAQHTCTTLLEVTQRCNLGCPICFARSLDS-GTDPDLDTLARNMAHIR 131 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFE-IAVETNG 120 T L+GGEP ++ D+P I L F + + TNG Sbjct: 132 ETAGPCTLQ--LSGGEPTVRDDLPEIVRLAAAQNFRLVQLNTNG 173 >gi|16331653|ref|NP_442381.1| molybdenum cofactor biosynthesis protein A [Synechocystis sp. PCC 6803] gi|3024143|sp|Q55369|MOAA_SYNY3 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|1001211|dbj|BAA10451.1| molybdenum cofactor biosynthesis protein A [Synechocystis sp. PCC 6803] Length = 327 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 25/95 (26%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C I + + + ++I E G +E R LT Sbjct: 37 CNL-----------RCHYC-MPVDAIFLEQSSYLSCQEYGEIIGELIALGLEEVR---LT 81 Query: 92 GGEPLLQVD-VPLIQA-----LNKRGFEIAVETNG 120 GGEPLL+ + +++A L K G TNG Sbjct: 82 GGEPLLRRNFTEIVRAIGQLKLKKIGLT----TNG 112 >gi|312116333|ref|YP_004013929.1| molybdenum cofactor biosynthesis protein A [Rhodomicrobium vannielii ATCC 17100] gi|311221462|gb|ADP72830.1| molybdenum cofactor biosynthesis protein A [Rhodomicrobium vannielii ATCC 17100] Length = 345 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 10/87 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C K +++L L G ++ R LTGGEPL++ + Sbjct: 35 DRCDFRCVYC-MPDRMQFLPKAELLTLEELDRLCAGFIAKGVRKIR---LTGGEPLMRRN 90 Query: 101 VPLIQALNKRGF------EIAVETNGT 121 + L+ R E+ + +NG+ Sbjct: 91 LLLLVRALSRHLDAGTLDEVTLTSNGS 117 >gi|225850334|ref|YP_002730568.1| molybdenum cofactor biosynthesis protein A [Persephonella marina EX-H1] gi|225645594|gb|ACO03780.1| molybdenum cofactor biosynthesis protein A [Persephonella marina EX-H1] Length = 321 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 11/73 (15%) Query: 41 DRLSAQCRFC--D-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 D+ + +C +C D ++FV +++A L++ G ++ R +TGGEPL+ Sbjct: 12 DKCNLKCFYCRPDNSEFV----PHDEILRYEEIARLVKAMTKYGLRKVR---ITGGEPLV 64 Query: 98 QV-DVPLIQALNK 109 + L++ L Sbjct: 65 RPQLEELVKMLKD 77 >gi|218886909|ref|YP_002436230.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757863|gb|ACL08762.1| Radical SAM domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 238 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 18/100 (18%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +F GCN+ +C C + A IE Sbjct: 27 IF--LGGCNM-----------RCPTC---HNWQLAWHADTLPLLSRAA-IESYIEARRHW 69 Query: 85 GRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 V+TGGE + +++ L + G + V++NG Sbjct: 70 LDGVVVTGGEATMVDGFADMLRGLRRFGLPVKVDSNGLRP 109 >gi|88602832|ref|YP_503010.1| radical SAM family protein [Methanospirillum hungatei JF-1] gi|88188294|gb|ABD41291.1| Radical SAM [Methanospirillum hungatei JF-1] Length = 388 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 28/98 (28%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GC + C++C N+ + D++ + + Sbjct: 14 GCP-----------SNCKYC-----WSSEEGSPVMNIQVVKDVVS---WLSDFRDDPVTI 54 Query: 91 T--GGEPLL-------QVDVPLIQALNKRGFEIAVETN 119 T GGEPLL Q L Q L K A++TN Sbjct: 55 TFHGGEPLLAGPDFYRQALPLLAQGLAKNKPSFAIQTN 92 >gi|78043029|ref|YP_359745.1| radical SAM domain-containing protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995144|gb|ABB14043.1| radical SAM domain protein [Carboxydothermus hydrogenoformans Z-2901] Length = 451 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 25/109 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C + G K ++L L E G + V++ Sbjct: 127 CNL-----------RCEGC---WAGAYA-KHDELEYERLDRLFNEAKELGIY---WIVMS 168 Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGIDWI----CVSP 135 GGEP + L N F I TNGT + D I +SP Sbjct: 169 GGEPFMYPYLFDLAAKHNDMAFMIY--TNGTRIDEKTADKIIEVGNISP 215 >gi|295400597|ref|ZP_06810575.1| YfkB-like domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|294977500|gb|EFG53100.1| YfkB-like domain protein [Geobacillus thermoglucosidasius C56-YS93] Length = 374 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L +EE R +TGGEP+L + Sbjct: 44 RCEHCAVGYT-LQTKDPEALPLDLLIKRLEEI-----PHLRSLSITGGEPMLSLKSVDNY 97 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 VPL++ ++RG + +N T+E Sbjct: 98 VVPLLKYAHERGVRTQLNSNLTLEL 122 >gi|227500732|ref|ZP_03930781.1| radical SAM domain protein [Anaerococcus tetradius ATCC 35098] gi|227217139|gb|EEI82492.1| radical SAM domain protein [Anaerococcus tetradius ATCC 35098] Length = 728 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 33/105 (31%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL- 90 CNL +C +C ++ + + + + D I+ + +L Sbjct: 32 CNL-----------RCSYC---YITHKSSN-KKMSFDVAKKFIDYVLSEEIIRPKGVILD 76 Query: 91 -TGGEPLLQVDVPLIQALNKR--------------GFEIAVETNG 120 GGEPLL ++ LI + + I + TNG Sbjct: 77 FIGGEPLL--EIKLINQICDYFKLKTYLLNDEWYWDYRINITTNG 119 >gi|255505152|ref|ZP_05344771.3| radical SAM domain protein [Bryantella formatexigens DSM 14469] gi|255269307|gb|EET62512.1| radical SAM domain protein [Bryantella formatexigens DSM 14469] Length = 463 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 27/103 (26%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD--QLADLIEEQWITGEKEGRY-- 87 CNL CR+C +G GR + ++ + I R Sbjct: 115 CNL-----------ACRYC----FAEEGEYHGRRALMSYEVGKKALDFLIANSGSRRNLE 159 Query: 88 CVLTGGEPLL--QVDVPLI------QALNKRGFEIAVETNGTI 122 GGEPL+ QV L+ +AL+ + F + TNG + Sbjct: 160 VDFFGGEPLMNWQVVKDLVKYGREQEALHDKKFRFTLTTNGVL 202 >gi|91788473|ref|YP_549425.1| hypothetical protein Bpro_2611 [Polaromonas sp. JS666] gi|123164823|sp|Q12AB5|RLMN_POLSJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|91697698|gb|ABE44527.1| 23S rRNA m(2)A-2503 methyltransferase [Polaromonas sp. JS666] Length = 382 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 42/116 (36%), Gaps = 20/116 (17%) Query: 24 AVFC----RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLADL-IEE 76 AVF R G Q + CRFC T G T G + A+ + + Sbjct: 92 AVFIPETDR--G--TLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIVSQLWFAEHFLRQ 147 Query: 77 QWITGEKEGRYCVLTG-GEPLL---QVDVPLIQALNKRGF-----EIAVETNGTIE 123 E+ V+ G GEPL Q+ L L+ G+ + V T+G + Sbjct: 148 HLGRQERVISNVVMMGMGEPLQNYSQLVPALRVMLDDHGYGLSRRRVTVSTSGVVP 203 >gi|330836810|ref|YP_004411451.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Spirochaeta coccoides DSM 17374] gi|329748713|gb|AEC02069.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Spirochaeta coccoides DSM 17374] Length = 188 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 19/88 (21%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 GC C C G G V + + I + Sbjct: 43 QGCP-----------HACPGCHNPETWTSGV-GREMTVTDIYERIHRNPLFTG-----VT 85 Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIA 115 +GG+PL Q L G+E+A Sbjct: 86 FSGGDPLFQPSGFADLATLCKAGGYEVA 113 >gi|289580620|ref|YP_003479086.1| Wyosine base formation domain protein [Natrialba magadii ATCC 43099] gi|289530173|gb|ADD04524.1| Wyosine base formation domain protein [Natrialba magadii ATCC 43099] Length = 350 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 21/107 (19%) Query: 38 REQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADL-----------------IEEQW 78 + + +C FC D + + + + D + + Sbjct: 81 TPVVKCNERCVFCWRDHQGHAYEMDDVEWDDPEAVVDASIKLQKKLLSGFGGNDEVPREV 140 Query: 79 ITGEKEGRYCVLT-GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 E R+ ++ GEP L +P L+ A + R + +NGT Sbjct: 141 FDEAMEPRHVAISLDGEPTLYPYLPELLAAFHDRDITTFLVSNGTRP 187 >gi|217076776|ref|YP_002334492.1| anaerobic ribonucleoside-triphosphate reductase-related protein [Thermosipho africanus TCF52B] gi|217036629|gb|ACJ75151.1| anaerobic ribonucleoside-triphosphate reductase-related protein [Thermosipho africanus TCF52B] Length = 172 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 12/70 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG--EKEGR 86 F GC+ S +C FC + KG +Y+++ L +++++ + Sbjct: 25 FQGCD---------RSPKCLFCHNKETW-EPYKGFKYDLEDLIQILKDKINYAFESYDKI 74 Query: 87 YCVLTGGEPL 96 V GGEPL Sbjct: 75 AVVYLGGEPL 84 >gi|51894001|ref|YP_076692.1| hypothetical protein STH2863 [Symbiobacterium thermophilum IAM 14863] gi|51857690|dbj|BAD41848.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 406 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 19/87 (21%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE--Q 77 G F + +C +C +G + + DL E + Sbjct: 54 VGTATFF------------ASLKCHRRCFYC-----FNPNQEGYDFFQEHRRDLGAELAE 96 Query: 78 WITGEKEGRYCVLTGGEPLLQVDVPLI 104 G + + LTGGEPLL + + Sbjct: 97 LAEGGFQVSHVALTGGEPLLHPEEAVT 123 >gi|238785318|ref|ZP_04629307.1| Ribosomal RNA large subunit methyltransferase N [Yersinia bercovieri ATCC 43970] gi|238713771|gb|EEQ05794.1| Ribosomal RNA large subunit methyltransferase N [Yersinia bercovieri ATCC 43970] Length = 398 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I TG + V+ G Sbjct: 132 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGTRPITNVVMMG 191 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL ++ VP + L+ GF + + T+G + + D I V Sbjct: 192 MGEPLLNLNNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 242 >gi|332179144|gb|AEE14833.1| Radical SAM domain protein [Thermodesulfobium narugense DSM 14796] Length = 335 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 18/95 (18%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL + + + +G L D I++ + Sbjct: 16 TQECNLKCVHCYRDAGER------KYNELATKEGK-----SLLDEIKKAG------FKIM 58 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 V +GGEPLL+ D+ L + + G TNGT+ Sbjct: 59 VFSGGEPLLRKDIFELTRYASSIGLRPVFGTNGTL 93 >gi|329297584|ref|ZP_08254920.1| ribosomal RNA large subunit methyltransferase N [Plautia stali symbiont] Length = 376 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I +TG++ V+ G Sbjct: 110 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG 169 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + VP ++ L+ GF + + T+G + + D I V Sbjct: 170 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 220 >gi|328552419|gb|AEB22911.1| YfkA [Bacillus amyloliquefaciens TA208] gi|328910769|gb|AEB62365.1| hypothetical protein LL3_00820 [Bacillus amyloliquefaciens LL3] Length = 373 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 6/45 (13%) Query: 86 RYCVLTGGEPLLQVD------VPLIQALNKRGFEIAVETNGTIEP 124 R +TGGEP+L + VPL++ ++RG + +N T++ Sbjct: 79 RSISITGGEPMLSLKSVKEYVVPLLKYAHERGVRTQINSNLTLDI 123 >gi|307132063|ref|YP_003884079.1| 23S rRNA m(2)A2503 methyltransferase [Dickeya dadantii 3937] gi|306529592|gb|ADM99522.1| 23S rRNA m(2)A2503 methyltransferase [Dickeya dadantii 3937] Length = 392 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I +TG++ V+ G Sbjct: 126 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG 185 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + VP ++ L+ GF + + T+G + + D I V Sbjct: 186 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 236 >gi|292489050|ref|YP_003531937.1| hypothetical protein EAMY_2582 [Erwinia amylovora CFBP1430] gi|292900179|ref|YP_003539548.1| hypothetical protein EAM_2478 [Erwinia amylovora ATCC 49946] gi|291200027|emb|CBJ47152.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946] gi|291554484|emb|CBA22015.1| UPF0063 protein yfgB [Erwinia amylovora CFBP1430] gi|312173205|emb|CBX81460.1| UPF0063 protein yfgB [Erwinia amylovora ATCC BAA-2158] Length = 388 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I +TG++ V+ G Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG 181 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + VP ++ L+ GF + + T+G + + D I V Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232 >gi|259907715|ref|YP_002648071.1| ribosomal RNA large subunit methyltransferase N [Erwinia pyrifoliae Ep1/96] gi|224963337|emb|CAX54822.1| conserved uncharacterized protein YfgB [Erwinia pyrifoliae Ep1/96] gi|283477569|emb|CAY73485.1| UPF0063 protein yfgB [Erwinia pyrifoliae DSM 12163] gi|310764777|gb|ADP09727.1| ribosomal RNA large subunit methyltransferase N [Erwinia sp. Ejp617] Length = 389 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I +TG++ V+ G Sbjct: 123 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG 182 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + VP ++ L+ GF + + T+G + + D I V Sbjct: 183 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 233 >gi|218459838|ref|ZP_03499929.1| molybdenum cofactor biosynthesis protein A [Rhizobium etli Kim 5] Length = 139 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 9/86 (10%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C K +++L L G ++ R LTGGEPL++ + Sbjct: 18 DRCDFRCTYC-MAENMTFLPKKDLLTLEELDRLCSAFIAKGVRKIR---LTGGEPLVRKN 73 Query: 101 VP-LIQALNKR---GF-EIAVETNGT 121 + L++ L ++ G E+ + TNG+ Sbjct: 74 IMYLVRRLGEKIGSGLDELTLTTNGS 99 >gi|257075637|ref|ZP_05569998.1| molybdenum cofactor biosynthesis protein A [Ferroplasma acidarmanus fer1] Length = 315 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 21/101 (20%) Query: 46 QCRFCDTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103 C FC ++GT+ +Q+ +++ + TGGEPLL+ D+ Sbjct: 32 HCIFC-----HMEGTERSMQYMTPEQIENVVA---VAASHGVNKIKFTGGEPLLREDILE 83 Query: 104 IQALNKRGFE--IAVETNGTIEPP--------QGIDWICVS 134 I ++ I++ TNG +E P G+D + +S Sbjct: 84 IVRRTRKHITGNISLTTNG-VELPKLAKGLKEAGLDRVNIS 123 >gi|325108676|ref|YP_004269744.1| radical SAM protein [Planctomyces brasiliensis DSM 5305] gi|324968944|gb|ADY59722.1| Radical SAM domain protein [Planctomyces brasiliensis DSM 5305] Length = 433 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 23/97 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C+ C + K R + LI E G Sbjct: 58 CNL-----------RCQGC-----WVDVAAKQQRIEPEAFHRLINEAKAEGNVFFGIV-- 99 Query: 91 TGGEPLLQVDVPLIQALNKR-GFEIAVETNGTIEPPQ 126 GGEP + D L+ L + + TNG P+ Sbjct: 100 -GGEPFMHSD--LLDMLAEHPDCYFQIFTNGHFITPE 133 >gi|20088939|ref|NP_615014.1| tRNA-modifying enzyme [Methanosarcina acetivorans C2A] gi|19913785|gb|AAM03494.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 345 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 19/97 (19%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLAD------------------LIEEQWITGEKEGRY 87 +C FC G + +++ + + E+W+ G + Sbjct: 98 RCLFCWRPTEVPVPAPGEWDSPEKIVEESIACQRKLITGFGGSPNALRERWLEGNEPNNV 157 Query: 88 CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 + GEP +P LI+ KRGF + TNGT+ Sbjct: 158 AISLSGEPTFYPYLPELIEEYEKRGFTTFLVTNGTVP 194 >gi|38233076|ref|NP_938843.1| hypothetical protein DIP0464 [Corynebacterium diphtheriae NCTC 13129] gi|38199335|emb|CAE48968.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 167 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 16/102 (15%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLI 104 +C +C +Q G VD L L + + V++GGEP I Sbjct: 2 RCVYC--HNAQLQEFAPGAVGVDDLVGLARRRIGLIDA----VVISGGEPTAVPGLAEAI 55 Query: 105 QALNKRGFEIAVETNG-------TI--EPPQGIDWICVSPKA 137 ++ G + + T G T+ +P DWI + KA Sbjct: 56 CRIHDLGLPVGLHTCGYAPKRLATLVSQPESRPDWIGLDIKA 97 >gi|254237379|ref|ZP_04930702.1| hypothetical protein PACG_03453 [Pseudomonas aeruginosa C3719] gi|126169310|gb|EAZ54821.1| hypothetical protein PACG_03453 [Pseudomonas aeruginosa C3719] Length = 384 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 35/108 (32%), Gaps = 10/108 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLT 91 L +C +CD + VD LADL ++ + Sbjct: 11 PLALYVHIPWCVRKCPYCDFNSHAAGTELPEEAYVDALLADLEQDLRHVHGRRLGSIFFG 70 Query: 92 GGEPLLQVDVPLIQALN--------KRGFEIAVETN-GTIEPPQGIDW 130 GG P L L + L G EI +E N GT E + D+ Sbjct: 71 GGTPSLFSAKALGRLLEGVERRVGFADGIEITLEANPGTFEQVKFADY 118 >gi|116054116|ref|YP_788559.1| coproporphyrinogen III oxidase [Pseudomonas aeruginosa UCBPP-PA14] gi|115589337|gb|ABJ15352.1| putative oxygen-independent coproporphyrinogen III oxidase [Pseudomonas aeruginosa UCBPP-PA14] Length = 384 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 35/108 (32%), Gaps = 10/108 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLT 91 L +C +CD + VD LADL ++ + Sbjct: 11 PLALYVHIPWCVRKCPYCDFNSHAAGTELPEEAYVDALLADLEQDLRHVHGRRLGSIFFG 70 Query: 92 GGEPLLQVDVPLIQALN--------KRGFEIAVETN-GTIEPPQGIDW 130 GG P L L + L G EI +E N GT E + D+ Sbjct: 71 GGTPSLFSAKALGRLLEGVERRVGFADGIEITLEANPGTFEQVKFADY 118 >gi|332176313|gb|AEE12003.1| Radical SAM domain protein [Porphyromonas asaccharolytica DSM 20707] Length = 379 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 14/99 (14%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL G + CR + +V +I+ + + T Sbjct: 51 CNLHCGHC----GSDCRV---------ESGVDELSVADFIQIIDGLTPHVDPNKLLVIFT 97 Query: 92 GGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQGID 129 GGE L++ D+ AL +RG+ + TNG + Q +D Sbjct: 98 GGEALVRKDIEEAGLALYRRGYPWGIVTNGMLLDAQRLD 136 >gi|283471147|emb|CAQ50358.1| conserved protein YfkA [Staphylococcus aureus subsp. aureus ST398] Length = 383 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 12/91 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q ++D + ++E R +TGGEP+ Sbjct: 45 RCSHCAVGYT-LQTVDPEPLDMDLIYRRLDEI-----PNLRTMSITGGEPMFSKKSIRNV 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130 PL++ + RG I + +N T+ + +D Sbjct: 99 VKPLLKYAHNRGIYIQMNSNLTLPQDRYLDI 129 >gi|312112313|ref|YP_003990629.1| YfkB-like domain-containing protein [Geobacillus sp. Y4.1MC1] gi|311217414|gb|ADP76018.1| YfkB-like domain-containing protein [Geobacillus sp. Y4.1MC1] Length = 374 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D L +EE R +TGGEP+L + Sbjct: 44 RCEHCAVGYT-LQTKDPEALPLDLLIKRLEEI-----PHLRSLSITGGEPMLSLKSVDNY 97 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 VPL++ ++RG + +N T+E Sbjct: 98 VVPLLKYAHERGVRTQLNSNLTLEL 122 >gi|168204695|ref|ZP_02630700.1| 4Fe-4S binding domain protein/radical SAM domain protein [Clostridium perfringens E str. JGS1987] gi|170663810|gb|EDT16493.1| 4Fe-4S binding domain protein/radical SAM domain protein [Clostridium perfringens E str. JGS1987] Length = 273 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 53/164 (32%), Gaps = 45/164 (27%) Query: 25 VFCRFSGCNLWS------------------------------GREQDRLSAQCRFCDTDF 54 +F F GCN + +C CD Sbjct: 22 IF--FQGCNFKCLYCHNPETINKCISCGKCVENCEVGALSISDGKVIWDEEECISCDKCI 79 Query: 55 ---VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNK 109 + K Y+V++L IE+ R ++GGE L + L + + K Sbjct: 80 KLCENMSSPKLKEYSVEELVKKIEK----DSFFIRGITVSGGECTLNSEFLIKLFREVKK 135 Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153 G V+TNG + + I ++ K D+K E + ++ Sbjct: 136 LGLTCFVDTNGNTKLDDEL--INLTDKFMLDVK--SIDEKENIW 175 >gi|206564576|ref|YP_002235339.1| MoaA/NifB/PqqE family protein [Burkholderia cenocepacia J2315] gi|254249633|ref|ZP_04942953.1| hypothetical protein BCPG_04498 [Burkholderia cenocepacia PC184] gi|124876134|gb|EAY66124.1| hypothetical protein BCPG_04498 [Burkholderia cenocepacia PC184] gi|198040616|emb|CAR56602.1| MoaA/NifB/PqqE family protein [Burkholderia cenocepacia J2315] Length = 386 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 22/116 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R +V++ ++E + Sbjct: 38 CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 GGEPLL ++P +++ + KR + + TN + + +D SP + + G Sbjct: 79 AGGEPLLHKEMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYQPSPYFVWSVHLDG 133 >gi|315635794|ref|ZP_07891056.1| molybdenum cofactor biosynthesis protein A [Arcobacter butzleri JV22] gi|315479773|gb|EFU70444.1| molybdenum cofactor biosynthesis protein A [Arcobacter butzleri JV22] Length = 323 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 10/85 (11%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 +R + +C++C + F + + + L I+ G K+ R +TGGEPLL+ Sbjct: 19 ERCNFRCQYCMPEKPFSWVPREN--LLSYEDLFKFIKASIDEGIKKVR---ITGGEPLLR 73 Query: 99 VDVPLIQALN---KRGFEIAVETNG 120 D+ + K+ ++A+ TNG Sbjct: 74 EDLDFFIKMVFDYKKDIDLALTTNG 98 >gi|254487119|ref|ZP_05100324.1| radical SAM domain protein [Roseobacter sp. GAI101] gi|214043988|gb|EEB84626.1| radical SAM domain protein [Roseobacter sp. GAI101] Length = 315 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 8/89 (8%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY--NVDQLADLIEEQWITGEKEGRYCVLT 91 LW + +C C ++ T D++ D + + T Sbjct: 35 LWFNT-GTLCNIECVNC---YIASSPTNDALIYITADEVRDYLGQITTRNWPVTE-VAFT 89 Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETN 119 GGEP + + + +A G+++ + TN Sbjct: 90 GGEPFMNPQMIEITEASLSAGYDVLILTN 118 >gi|307150486|ref|YP_003885870.1| hopanoid biosynthesis associated radical SAM protein HpnH [Cyanothece sp. PCC 7822] gi|306980714|gb|ADN12595.1| hopanoid biosynthesis associated radical SAM protein HpnH [Cyanothece sp. PCC 7822] Length = 339 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 20/118 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + + + +EE + Sbjct: 38 CNL-----------ACSGCG-KIQHPKEILKQQLTPQECFAAVEECG------APVVSIP 79 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 GGEPLL + ++Q L KR + + TN I + + SP + + G +E Sbjct: 80 GGEPLLHPQIDEIVQGLVKRKKFVYLCTN-AILLEKNLHKFEPSPYLTFSVHLDGLKE 136 >gi|11499786|ref|NP_071029.1| arylsulfatase regulatory protein, putative [Archaeoglobus fulgidus DSM 4304] gi|3334443|sp|O28079|Y2204_ARCFU RecName: Full=Uncharacterized protein AF_2204 gi|2648320|gb|AAB89048.1| arylsulfatase regulatory protein, putative [Archaeoglobus fulgidus DSM 4304] Length = 412 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Query: 46 QCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104 C +C ++ + +G + + ++L +++ + E + G EPL+ D + Sbjct: 67 NCPYC---YIPAEIRERGTKMSYEKLEEILT---VLAENGVERVIFHGAEPLMVKD-EIF 119 Query: 105 QALNKRGFEIAVETNGT 121 +A+ F+ ++TN T Sbjct: 120 RAMEDFDFKYGIQTNAT 136 >gi|326388223|ref|ZP_08209826.1| coenzyme Pyrrolo-quinoline quinone (PQQ) synthesis protein E PqqE [Novosphingobium nitrogenifigens DSM 19370] gi|326207389|gb|EGD58203.1| coenzyme Pyrrolo-quinoline quinone (PQQ) synthesis protein E PqqE [Novosphingobium nitrogenifigens DSM 19370] Length = 359 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 14/102 (13%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R QC +C ++ T + +IE+ G + + TGGEPL + D+ Sbjct: 10 RCPLQCAYCANPLELVRPT--EELDTSGWKRVIEQAAELGVLQFHF---TGGEPLARRDL 64 Query: 102 -PLIQALNKRGFEIAVETNGTIEPP--------QGIDWICVS 134 L+ G + T+G + P GID I +S Sbjct: 65 VELVAHAAANGLYTNLITSGVLLTPDLMAALVTAGIDHIQLS 106 >gi|319783989|ref|YP_004143465.1| coenzyme PQQ biosynthesis protein E [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169877|gb|ADV13415.1| coenzyme PQQ biosynthesis protein E [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 373 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 6/80 (7%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R QC +C ++ + + L E G + L+GGEP L+ D+ Sbjct: 18 RCPLQCPYCSNPLELLKA--NRELDTETWLALFSEAADLGVLQVH---LSGGEPTLRRDL 72 Query: 102 P-LIQALNKRGFEIAVETNG 120 LI L RG + T G Sbjct: 73 EQLIAGLAGRGVYTNLITAG 92 >gi|304438930|ref|ZP_07398853.1| radical SAM domain protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372596|gb|EFM26179.1| radical SAM domain protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 468 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 26/95 (27%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGRYCV 89 CNL +C C G + N+ +++ D+I + G Sbjct: 122 CNL-----------KCTGC------WAAEYGHKLNLTFEEMDDIITQGKELGCYFYL--- 161 Query: 90 LTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122 LTGGEPL+ + L + N GF TNGT+ Sbjct: 162 LTGGEPLVRKDDLIRLCEKHNDCGFHAF--TNGTL 194 >gi|268323224|emb|CBH36812.1| molybdenum cofactor biosynthesis protein A [uncultured archaeon] Length = 324 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 22/100 (22%) Query: 27 CRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE- 82 RFS CNL C +C +G + + A+LI Sbjct: 26 LRFSLTNRCNL-----------NCIYC-----HNEGEGRDKVKAEISAELIIAIARVAST 69 Query: 83 -KEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 R +GGEPL++ D+ ++ + +I+V TNG Sbjct: 70 YFGIRRIKFSGGEPLMRADLAEIVHGIRDYEDDISVTTNG 109 >gi|320010716|gb|ADW05566.1| Radical SAM domain protein [Streptomyces flavogriseus ATCC 33331] Length = 361 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 7/69 (10%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R C C T G T + D+L + T E +LTGGEPLL Sbjct: 24 RCPLSCAHCST---GSSLTTREEPDADRLVRFVGSF--TRENRPDVVMLTGGEPLLLP-- 76 Query: 102 PLIQALNKR 110 L++ L+ R Sbjct: 77 ALVEELSAR 85 >gi|220903570|ref|YP_002478882.1| Radical SAM domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867869|gb|ACL48204.1| Radical SAM domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 394 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 17/95 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL +C C + + GT N Q +I++ Sbjct: 47 TQRCNL-----------KCVHCYAHAIEVDGTDD--INTQQAKAMIDDL---AAYGAPVM 90 Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 + +GGEPL++ D+ L +G + TNGT+ Sbjct: 91 LFSGGEPLVRKDLVELASHATSKGMRAVISTNGTL 125 >gi|212702237|ref|ZP_03310365.1| hypothetical protein DESPIG_00248 [Desulfovibrio piger ATCC 29098] gi|212674363|gb|EEB34846.1| hypothetical protein DESPIG_00248 [Desulfovibrio piger ATCC 29098] Length = 165 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 24/93 (25%), Gaps = 21/93 (22%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 VF GC C C G D + E + Sbjct: 24 VF--TQGCP-----------HHCPGCHNPQT-HDFDGGEFRETDDILRQFMENPLLSG-- 67 Query: 85 GRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115 +GGEP +Q L A++ G + Sbjct: 68 ---ITFSGGEPFVQAEPLCHLADAVHAAGKNVY 97 >gi|157736630|ref|YP_001489313.1| molybdenum cofactor biosynthesis protein A [Arcobacter butzleri RM4018] gi|167011811|sp|A8ERS0|MOAA_ARCB4 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|157698484|gb|ABV66644.1| molybdopterin biosynthesis protein A [Arcobacter butzleri RM4018] Length = 323 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 10/85 (11%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 +R + +C++C + F + + + L I+ G K+ R +TGGEPLL+ Sbjct: 19 ERCNFRCQYCMPEKPFSWVPREN--LLSYEDLFKFIKASIDEGIKKVR---ITGGEPLLR 73 Query: 99 VDVPLIQALN---KRGFEIAVETNG 120 D+ + K+ ++A+ TNG Sbjct: 74 EDLDFFIKMVFDYKKDIDLALTTNG 98 >gi|315655148|ref|ZP_07908050.1| molybdopterin cofactor biosynthesis protein A [Mobiluncus curtisii ATCC 51333] gi|315490629|gb|EFU80252.1| molybdopterin cofactor biosynthesis protein A [Mobiluncus curtisii ATCC 51333] Length = 361 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 10/70 (14%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY----CVLTGGEPL 96 DR +C +C + +L D E + G R LTGGEPL Sbjct: 42 DRCDLRCSYC------LPRGGVKWVPRRELLDASEILRLVGIAIHRLGITQVRLTGGEPL 95 Query: 97 LQVDVPLIQA 106 L+ D+ I A Sbjct: 96 LRPDLLEIAA 105 >gi|296328188|ref|ZP_06870719.1| conserved hypothetical protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154700|gb|EFG95486.1| conserved hypothetical protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 788 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 24/98 (24%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK--EGRYCV 89 CNL C +C +V T+ + + E E V Sbjct: 109 CNL-----------NCLYC---YVDSSPTRSNYMKPEIAIKIASELINMNSDNEEILTVV 154 Query: 90 LTGGEPLLQVDVPLIQALNKR------GFEIAVETNGT 121 GGEP L ++ I+A + F++ ++TNGT Sbjct: 155 FHGGEPTL--NLNAIRAFCEYIIPYRDRFDLCIQTNGT 190 >gi|293605264|ref|ZP_06687650.1| molybdenum cofactor biosynthesis protein A [Achromobacter piechaudii ATCC 43553] gi|292816320|gb|EFF75415.1| molybdenum cofactor biosynthesis protein A [Achromobacter piechaudii ATCC 43553] Length = 344 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 8/85 (9%) Query: 41 DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR +C +C DF G + T ++A +I G + R LTGGEPLL+ Sbjct: 35 DRCDLRCSYCLPKDFKGFE-TPANWLTHAEMARVIGLFVALGVAKLR---LTGGEPLLRR 90 Query: 100 -DVPLIQALNK-RGFE-IAVETNGT 121 L A++ G ++V TNGT Sbjct: 91 GLTDLAGAVSAMAGVTDLSVSTNGT 115 >gi|126309965|ref|XP_001379493.1| PREDICTED: similar to Molybdenum cofactor biosynthesis protein 1 B (MOCS1B) (Molybdenum cofactor synthesis-step 1 protein A-B) (Molybdenum cofactor biosynthesis protein C) [Monodelphis domestica] Length = 626 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 6/91 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N ++ + +C++C + K ++ L G + R LTG Sbjct: 60 NYLRISLTEKCNLRCQYCMPEEGVPLTPKADLLTTREILTLSRLFVKEGVDKIR---LTG 116 Query: 93 GEPLLQVD-VPLIQALNKRG--FEIAVETNG 120 GEPL++ D V ++ L + IA+ TNG Sbjct: 117 GEPLIRPDVVDIVAQLQQLDSLKTIAITTNG 147 >gi|158521818|ref|YP_001529688.1| radical SAM domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158510644|gb|ABW67611.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3] Length = 363 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 11/86 (12%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 R +C+ C + D ++ E+ + LTGGEP Sbjct: 19 CIILTYRCQMRCQMC----------NIWQNPSDPAREITAEELKILPAGFEFINLTGGEP 68 Query: 96 LLQVDV-PLIQALNKRGFEIAVETNG 120 L+ D+ +I L+ + I V T+G Sbjct: 69 FLRDDLEEIISVLSPKAKRIVVSTSG 94 >gi|57642160|ref|YP_184638.1| molybdenum cofactor biosynthesis protein A [Thermococcus kodakarensis KOD1] gi|73921006|sp|Q5JHN5|MOAA_PYRKO RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|57160484|dbj|BAD86414.1| molybdenum cofactor biosynthesis protein A [Thermococcus kodakarensis KOD1] Length = 307 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 40/170 (23%) Query: 21 GRVAVFCR---FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77 GR R CN +C FC G + +++ L+ Sbjct: 7 GRPVTNLRISLTQECNY-----------RCFFC--HREGQRFLAKNELTPEEIERLV--- 50 Query: 78 WITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI-------EPPQGID 129 I R LTGGEP ++ D + +++ + ++++ TNG+ G+D Sbjct: 51 RIASRLGIRKVKLTGGEPTVREDILEIVKRIKPYVIDLSMTTNGSRLKELAKPLAKAGLD 110 Query: 130 WICV---SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176 + V S K +I G L+ V + + + L P+ Sbjct: 111 RVNVSLHSLKPEVYKRITGVDGLEAVLEGIEEAVK----------YLSPV 150 >gi|134300107|ref|YP_001113603.1| molybdenum cofactor biosynthesis protein A [Desulfotomaculum reducens MI-1] gi|172044320|sp|A4J6S5|MOAA_DESRM RecName: Full=Molybdenum cofactor biosynthesis protein A gi|134052807|gb|ABO50778.1| GTP cyclohydrolase subunit MoaA [Desulfotomaculum reducens MI-1] Length = 325 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 10/102 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +C +C Q ++++ A +++ G ++ R +TG Sbjct: 10 NYLRISVTDRCNLRCVYCMPPEGVKQTPHSEILSLEEFARVVDAASDIGIRKIR---ITG 66 Query: 93 GEPLLQVDVPLIQALNKRGF-----EIAVETNGTIEPPQGID 129 GEPL++ ++ + K +I++ TNG + D Sbjct: 67 GEPLVRKNI--VNLFEKISTNSAIDDISLTTNGVLFAEMASD 106 >gi|158317474|ref|YP_001509982.1| radical SAM domain-containing protein [Frankia sp. EAN1pec] gi|158112879|gb|ABW15076.1| Radical SAM domain protein [Frankia sp. EAN1pec] Length = 414 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 33/99 (33%), Gaps = 14/99 (14%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A + Q V+ A + T E +L Sbjct: 47 CNLSCTYCYVYHQADQNW------RQQPVTMSPAVVEATARRLAAHAKTHELPWMQIILH 100 Query: 92 GGEPLLQVDVPL----IQALNKRGFEIAVE----TNGTI 122 GGEPLL L + L G + AVE TNGT+ Sbjct: 101 GGEPLLAGHDHLRNVAERLLAAVGTDTAVEFVLQTNGTL 139 >gi|313673752|ref|YP_004051863.1| gtp cyclohydrolase subunit moaa [Calditerrivibrio nitroreducens DSM 19672] gi|312940508|gb|ADR19700.1| GTP cyclohydrolase subunit MoaA [Calditerrivibrio nitroreducens DSM 19672] Length = 327 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 14/89 (15%) Query: 41 DRLSAQCRFC-DT-DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 DR + +C++C T +F I+ + RY DLI I + + LTGGEPL++ Sbjct: 21 DRCNFRCKYCIPTHNFKFIEHKQILRYE-----DLIFALKIFSKYGIKKIRLTGGEPLVR 75 Query: 99 VDVPLIQALNKRGFEIAVE-----TNGTI 122 L + E +E TNG++ Sbjct: 76 KG--LTNFIKSIKSETDIEEITLTTNGSL 102 >gi|300864557|ref|ZP_07109420.1| Radical SAM domain protein [Oscillatoria sp. PCC 6506] gi|300337456|emb|CBN54568.1| Radical SAM domain protein [Oscillatoria sp. PCC 6506] Length = 470 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 20/110 (18%) Query: 31 GCNLWSGREQDRLSAQCR----------------FCDT--DFVGIQGTKGGRYNVDQLAD 72 GC G D C + D+ + + + + + Sbjct: 80 GCPYDCGLCPDHEQHSCLTLIELTDKCNLSCPICYADSGIEEISPHSNQSRLHRSLAQIE 139 Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETNG 120 ++ + + E E + L+GGEP L + ++ + + + + TNG Sbjct: 140 MMLDAVVANEGEPQIVQLSGGEPTLHPEFFEVMDLVKSKPIKHLMINTNG 189 >gi|299769674|ref|YP_003731700.1| molybdenum cofactor biosynthesis protein A [Acinetobacter sp. DR1] gi|298699762|gb|ADI90327.1| molybdenum cofactor biosynthesis protein A [Acinetobacter sp. DR1] Length = 343 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 16/106 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + + ++ L + ++ +TGGEPL++ Sbjct: 30 DRCNFKCVYC----MPEHPEWLNKQDLLSFEALFQFCRFMVQQGIESIRITGGEPLMRQG 85 Query: 101 VPL----IQALNKRGF-EIAVETNGTIEP-------PQGIDWICVS 134 + +QAL G I++ TNG G+D + +S Sbjct: 86 IVHFVRDLQALKALGLKRISMTTNGHYLAKYAKQLKDAGLDDLNIS 131 >gi|256752725|ref|ZP_05493574.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter ethanolicus CCSD1] gi|256748400|gb|EEU61455.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter ethanolicus CCSD1] Length = 317 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + + +++ +I I+ E + TGGEPL++ Sbjct: 18 DRCNLRCIYCMPEEGIPKKDHNEILRNEEILKII---RISAELGIKKVRFTGGEPLVRKG 74 Query: 101 VP--LIQALNKRGFE-IAVETNGTI 122 + + + +G E IA+ TNGT+ Sbjct: 75 IENIIYETSKIKGIEDIALTTNGTM 99 >gi|218889127|ref|YP_002437991.1| coproporphyrinogen III oxidase [Pseudomonas aeruginosa LESB58] gi|218769350|emb|CAW25110.1| probable oxidase [Pseudomonas aeruginosa LESB58] Length = 384 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 35/108 (32%), Gaps = 10/108 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLT 91 L +C +CD + VD LADL ++ + Sbjct: 11 PLALYVHIPWCVRKCPYCDFNSHAAGPELPEEAYVDALLADLEQDLRHVHGRRLGSIFFG 70 Query: 92 GGEPLLQVDVPLIQALN--------KRGFEIAVETN-GTIEPPQGIDW 130 GG P L L + L G EI +E N GT E + D+ Sbjct: 71 GGTPSLFSAKALGRLLEGVERRVGFADGIEITLEANPGTFEQVKFADY 118 >gi|15595583|ref|NP_249077.1| coproporphyrinogen III oxidase [Pseudomonas aeruginosa PAO1] gi|9946239|gb|AAG03775.1|AE004476_5 probable oxidase [Pseudomonas aeruginosa PAO1] Length = 384 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 35/108 (32%), Gaps = 10/108 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLT 91 L +C +CD + VD LADL ++ + Sbjct: 11 PLALYVHIPWCVRKCPYCDFNSHAAGPELPEEAYVDALLADLEQDLRHVHGRRLGSIFFG 70 Query: 92 GGEPLLQVDVPLIQALN--------KRGFEIAVETN-GTIEPPQGIDW 130 GG P L L + L G EI +E N GT E + D+ Sbjct: 71 GGTPSLFSAKALGRLLEGVERRVGFADGIEITLEANPGTFEQVKFADY 118 >gi|254243485|ref|ZP_04936807.1| hypothetical protein PA2G_04301 [Pseudomonas aeruginosa 2192] gi|126196863|gb|EAZ60926.1| hypothetical protein PA2G_04301 [Pseudomonas aeruginosa 2192] Length = 384 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 35/108 (32%), Gaps = 10/108 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLT 91 L +C +CD + VD LADL ++ + Sbjct: 11 PLALYVHIPWCVRKCPYCDFNSHAAGPELPEEAYVDALLADLEQDLRHVHGRRLGSIFFG 70 Query: 92 GGEPLLQVDVPLIQALN--------KRGFEIAVETN-GTIEPPQGIDW 130 GG P L L + L G EI +E N GT E + D+ Sbjct: 71 GGTPSLFSAKALGRLLEGVERRVGFADGIEITLEANPGTFEQVKFADY 118 >gi|332157688|ref|YP_004422967.1| molybdenum cofactor biosynthesis MoaA [Pyrococcus sp. NA2] gi|331033151|gb|AEC50963.1| molybdenum cofactor biosynthesis MoaA [Pyrococcus sp. NA2] Length = 966 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF 112 F +G ++Q+ ++ TGGEP L+ D+ +I+ + G+ Sbjct: 537 FYAREGEPIYEPTLEQIRMMLRNAKKQHPIGANAVQFTGGEPTLRDDLVEIIKIAKEEGY 596 Query: 113 -EIAVETNG 120 I + T+G Sbjct: 597 DHIQLNTDG 605 >gi|329896073|ref|ZP_08271309.1| putative Fe-S oxidoreductase [gamma proteobacterium IMCC3088] gi|328922033|gb|EGG29397.1| putative Fe-S oxidoreductase [gamma proteobacterium IMCC3088] Length = 254 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 14/92 (15%) Query: 31 GCNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCNL +C+FC D V T G Y Q+ D + Sbjct: 52 GCNL-----------RCKFCFSD-KPVWKPATTGQFYTPQQVFDGLASNARKYGHSTISA 99 Query: 89 VLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 + G Q + L+ + + F +ETNG Sbjct: 100 SASEGTLGRQHLLELLDLVEQSEFVYILETNG 131 >gi|291279838|ref|YP_003496673.1| radical SAM domain protein [Deferribacter desulfuricans SSM1] gi|290754540|dbj|BAI80917.1| radical SAM domain protein [Deferribacter desulfuricans SSM1] Length = 354 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 25/112 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + + G + +D+ L++E VL+ Sbjct: 18 CNLNCVHCRSSSDIH-------------SPEGLFTLDKCFKLLDEIKEVA---TPVIVLS 61 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ--------GIDWICVS 134 GGEPLL+ DV + + ++GF + + TNG + + GI + +S Sbjct: 62 GGEPLLRKDVFDIARYGTEKGFRMCMATNGVLVNDEICMKIKDSGIKIVSLS 113 >gi|242278348|ref|YP_002990477.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638] gi|242121242|gb|ACS78938.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638] Length = 357 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDVPLI 104 +C+FC D+ + T + L ++++ G+ R C++ G GEPLL L Sbjct: 43 RCKFCYADYSRHKPTF---IPDETLIQMMQDM---GDMGVRSCLMAGDGEPLLHP--ALT 94 Query: 105 QAL---NKRGFEIAVETNGTIEPPQ 126 +A+ G ++A+ TNG + P+ Sbjct: 95 KAITTGKNAGVDMALNTNGKLLTPE 119 >gi|308070127|ref|YP_003871732.1| Molybdenum cofactor biosynthesis protein A [Paenibacillus polymyxa E681] gi|305859406|gb|ADM71194.1| Molybdenum cofactor biosynthesis protein A [Paenibacillus polymyxa E681] Length = 338 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 16/92 (17%) Query: 41 DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 DR + +C +C D D+ + + + +++ L + G K+ R LTGG Sbjct: 23 DRCNFRCSYCMPKEIFGD-DYAFL--PQNECLSFEEIHRLTKLFVSLGVKKIR---LTGG 76 Query: 94 EPLLQVDVP-LI-QALNKRGFE-IAVETNGTI 122 EPL++ ++P L+ Q L+ G E I + TNG + Sbjct: 77 EPLMRRNLPDLVSQILSIDGVEDIGLTTNGVL 108 >gi|225181444|ref|ZP_03734887.1| molybdenum cofactor biosynthesis protein A [Dethiobacter alkaliphilus AHT 1] gi|225167842|gb|EEG76650.1| molybdenum cofactor biosynthesis protein A [Dethiobacter alkaliphilus AHT 1] Length = 328 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 21/96 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + G+ + + + + G K+ R LT Sbjct: 23 CNL-----------RCFYCSPGESCKPRSLRGQLSREHIVRAVTAAAKAGIKKVR---LT 68 Query: 92 GGEPLLQVDVPLIQALNK----RGFE-IAVETNGTI 122 GGEPL++ D+ + ++ G E +++ TNGT+ Sbjct: 69 GGEPLVRRDI--VGLVHDIAQIEGIEDLSLTTNGTL 102 >gi|163942456|ref|YP_001647340.1| molybdenum cofactor biosynthesis protein A [Bacillus weihenstephanensis KBAB4] gi|163864653|gb|ABY45712.1| molybdenum cofactor biosynthesis protein A [Bacillus weihenstephanensis KBAB4] Length = 337 Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 16/76 (21%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L + G ++ R LTG Sbjct: 22 DRCNLRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKVFVSIGVRKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQAL 107 GEPLL+ D+ LI+ L Sbjct: 75 GEPLLRKDLAKLIERL 90 >gi|313887300|ref|ZP_07820991.1| radical SAM domain protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923219|gb|EFR34037.1| radical SAM domain protein [Porphyromonas asaccharolytica PR426713P-I] Length = 383 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 14/99 (14%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL G + CR + +V +I+ + + T Sbjct: 55 CNLHCGHC----GSDCRV---------ESGVDELSVADFIQIIDGLTPHVDPNKLLVIFT 101 Query: 92 GGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQGID 129 GGE L++ D+ AL +RG+ + TNG + Q +D Sbjct: 102 GGEALVRKDIEEAGLALYRRGYPWGIVTNGMLLNAQRLD 140 >gi|307243816|ref|ZP_07525947.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492819|gb|EFM64841.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678] Length = 457 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 31/114 (27%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA--DLIEEQWITGEKEGRYCV 89 CNL +C++C QG GG+ + L + I R Sbjct: 104 CNL-----------KCKYC----FAKQGDFGGKAELMPLEVGKKALDYLIANSGNRRNLE 148 Query: 90 LT--GGEPLLQVDVPLIQALNKRGFEIA----------VETNGTIEPPQGIDWI 131 + GGEPL+ + P+++ L K G E+ + TNG + + ID+I Sbjct: 149 IDFFGGEPLM--NWPVVKELVKYGREVEKPAGKNIRFTITTNGVLLDDEKIDFI 200 >gi|300311209|ref|YP_003775301.1| molybdenum cofactor biosynthesis protein A [Herbaspirillum seropedicae SmR1] gi|300073994|gb|ADJ63393.1| molybdenum cofactor biosynthesis protein A [Herbaspirillum seropedicae SmR1] Length = 393 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 12/76 (15%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D + + + ++L + + G ++ R LTGGE Sbjct: 73 DRCNFRCVYCMPKDVFDKQYQFLPHSD--LLTFEELTRVAAQFVAHGVRKIR---LTGGE 127 Query: 95 PLLQVDVP-LIQALNK 109 PLL+ ++ LI L Sbjct: 128 PLLRKNIETLIGMLAA 143 >gi|188585597|ref|YP_001917142.1| Radical SAM domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350284|gb|ACB84554.1| Radical SAM domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 452 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 21/95 (22%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 S CNL +C+ C + G + + + LI E G + Sbjct: 121 TSKCNL-----------RCKGC---WAGTY-DHHDELDFETVDRLITEGKELGIY---FI 162 Query: 89 VLTGGEPLLQVDVPLIQALNKRGFEIAVE-TNGTI 122 L+GGEP PL++ K + + TNGT+ Sbjct: 163 PLSGGEPFAWD--PLLELCEKHDDVVFMPYTNGTL 195 >gi|15965617|ref|NP_385970.1| molybdenum cofactor biosynthesis protein A [Sinorhizobium meliloti 1021] gi|307302736|ref|ZP_07582492.1| molybdenum cofactor biosynthesis protein A [Sinorhizobium meliloti BL225C] gi|307318584|ref|ZP_07598018.1| molybdenum cofactor biosynthesis protein A [Sinorhizobium meliloti AK83] gi|24211996|sp|Q92PB4|MOAA_RHIME RecName: Full=Molybdenum cofactor biosynthesis protein A gi|15074798|emb|CAC46443.1| Probable molybdenum cofactor biosynthesis protein [Sinorhizobium meliloti 1021] gi|306895924|gb|EFN26676.1| molybdenum cofactor biosynthesis protein A [Sinorhizobium meliloti AK83] gi|306903100|gb|EFN33691.1| molybdenum cofactor biosynthesis protein A [Sinorhizobium meliloti BL225C] Length = 349 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 20/149 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C + + K +++L L G ++ R LTGGEPL++ + Sbjct: 38 DRCDFRCTYCMAEHMAFL-PKKDLLTLEELQRLCSAFIAKGVRKLR---LTGGEPLVRKN 93 Query: 101 VP-LIQAL---NKRGF--EIAVETNGTI-------EPPQGIDWICVSPKAGCDLK---IK 144 + LI+ L + G E+ + TNG+ G+ I VS K I Sbjct: 94 IMFLIRELGKEIEAGRLDELTLTTNGSQLSKFAAELVDCGVRRINVSLDTLDPDKFRQIT 153 Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSL 173 EL V ++ + + +L Sbjct: 154 RWGELARVLEGIDAALAAGLKVKINAVAL 182 >gi|325962676|ref|YP_004240582.1| Fe-S oxidoreductase [Arthrobacter phenanthrenivorans Sphe3] gi|323468763|gb|ADX72448.1| putative Fe-S oxidoreductase [Arthrobacter phenanthrenivorans Sphe3] Length = 529 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 16/91 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C F G + ++ ++ + +L+ Sbjct: 128 CNL-----------RCPTC---FTASGPQLQGVAPLSEVLANVDTRLSRENGRLDVLMLS 173 Query: 92 GGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120 GGEP L + L+ L R I V +NG Sbjct: 174 GGEPTLYPHLAELLDELVARPIVRIMVNSNG 204 >gi|224584897|ref|YP_002638696.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469425|gb|ACN47255.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 378 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L+DL + +E + + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVVWAQGREVKTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L EI +E N GT+E + ID+ Sbjct: 66 GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113 >gi|297582628|ref|YP_003698408.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Bacillus selenitireducens MLS10] gi|297141085|gb|ADH97842.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Bacillus selenitireducens MLS10] Length = 163 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 22/110 (20%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 R VF F+GC C C + ++ +I+ Sbjct: 21 RSVVF--FAGCP-----------HHCLGC----HNPDSWIRENGSEQPVSAIIDTLL--- 60 Query: 82 EKEGRYCVLTGGEPLLQVDVP-LI-QALNKRGFEIAVETNGTIEPPQGID 129 + L+GGEP Q LI +A K G ++ V T T+E D Sbjct: 61 QNPLSDVTLSGGEPFEQAQAAGLIAKACQKAGKDVWVFTGWTLEALLDRD 110 >gi|157146584|ref|YP_001453903.1| molybdenum cofactor biosynthesis protein A [Citrobacter koseri ATCC BAA-895] gi|157083789|gb|ABV13467.1| hypothetical protein CKO_02345 [Citrobacter koseri ATCC BAA-895] Length = 340 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 9/95 (9%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 33 DVCNFRCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 88 Query: 99 VD-VPLIQALNKRG--FEIAVETNGTIEPPQGIDW 130 D +I A+ + +IAV TNG +W Sbjct: 89 RDFTDIIAAVRENDAIRQIAVTTNGYRLARDAANW 123 >gi|153952032|ref|YP_001397419.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni subsp. doylei 269.97] gi|166217243|sp|A7H1N9|MOAA_CAMJD RecName: Full=Molybdenum cofactor biosynthesis protein A gi|152939478|gb|ABS44219.1| molybdenum cofactor biosynthesis protein [Campylobacter jejuni subsp. doylei 269.97] Length = 320 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 6/91 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N R + +C +C K + ++L ++ G ++ R +TG Sbjct: 11 NYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLSFEELFLFVKATIDEGIEKIR---ITG 67 Query: 93 GEPLLQVDVP-LIQALNK--RGFEIAVETNG 120 GEPLL+ D+ I+ ++ ++A+ TNG Sbjct: 68 GEPLLRKDLSIFIKMISDYKSDIDLAITTNG 98 >gi|86742041|ref|YP_482441.1| radical SAM family protein [Frankia sp. CcI3] gi|86568903|gb|ABD12712.1| Radical SAM [Frankia sp. CcI3] Length = 384 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 19/90 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C V T+ R +D++ ++E+ TG+ R+ + Sbjct: 85 CNL-----------ACDHC---IVESNPTRRERLTLDEVRSVLEQGQRTGK---RHVTFS 127 Query: 92 GGEPLLQVDV--PLIQALNKRGFEIAVETN 119 GGE L V I + G+ + VE+N Sbjct: 128 GGEVFLYPQVMCQAIAHGVRLGYVVDVESN 157 >gi|312885416|ref|ZP_07745057.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603] gi|311302114|gb|EFQ79142.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603] Length = 317 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 17/88 (19%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT--GEKEGR 86 S CNL C +C +G + + A E + Sbjct: 20 LSTCNL-----------GCIYC---TMGSEDEIAYDHRPQTPAARFIELIAAVHAHTGLK 65 Query: 87 YCVLTGGEPLLQVDVP-LIQALNKRGFE 113 LTGGEPLL ++ +I + G Sbjct: 66 TIRLTGGEPLLYRELEAVISGIKALGIT 93 >gi|303233368|ref|ZP_07320037.1| radical SAM domain protein [Atopobium vaginae PB189-T1-4] gi|302480497|gb|EFL43588.1| radical SAM domain protein [Atopobium vaginae PB189-T1-4] Length = 368 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 49/138 (35%), Gaps = 36/138 (26%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 AG A+F F+GC L +C FC + +G G + +LA+++ E Sbjct: 106 AGSGAIF--FTGCPL-----------RCVFCQNLRISQEGY-GKQITTARLAEIMLELQQ 151 Query: 80 TGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAV--ETNGTIEPPQGI----DWI 131 G PL I + G ++ + T+G E P+ + D I Sbjct: 152 QGALNINLVT-----PLHYAPHVRTAICMAKEAGLQLPIVCNTSG-YEKPETVAAMADVI 205 Query: 132 CV--------SPKAGCDL 141 + SPK L Sbjct: 206 DIWLPDMKFYSPKLASAL 223 >gi|296104196|ref|YP_003614342.1| 23S rRNA methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058655|gb|ADF63393.1| 23S rRNA methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 388 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 59/171 (34%), Gaps = 20/171 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG + V+ G Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVVMMG 181 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142 GEPLL + VP ++ L+ GF + + T+G + + D I V+ L Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 239 Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 E++ +N R L+ + I Y Sbjct: 240 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 285 >gi|262283214|ref|ZP_06060981.1| pyruvate formate-lyase-activating enzyme [Streptococcus sp. 2_1_36FAA] gi|262261466|gb|EEY80165.1| pyruvate formate-lyase-activating enzyme [Streptococcus sp. 2_1_36FAA] Length = 269 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 23/100 (23%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC++ +C++C DT + ++ + D L + + + G Sbjct: 37 VF--LQGCHM-----------RCQYCHNPDTWEMETNKSQLRTVD-DVLQEALRYKGFWG 82 Query: 82 EKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVET 118 K G ++GGE LLQ+D LI + G ++T Sbjct: 83 NKGG--ITVSGGEALLQIDF-LIAFFTKAKELGIHCTLDT 119 >gi|320009552|gb|ADW04402.1| Radical SAM domain protein [Streptomyces flavogriseus ATCC 33331] Length = 300 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 17/103 (16%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R + +C C F G + + D+ +L+ + + L GGEP + D Sbjct: 21 RCNFECLHC---FHGKRLQHADAFTADEAINLLA--LMRDQYGTEAVTLLGGEPFVYRD- 74 Query: 102 PLIQ----ALNKRGFEIAVETNG------TIEPPQGIDWICVS 134 L Q A G + + TNG E +D + VS Sbjct: 75 -LTQVVQYAKRDLGLRVEICTNGYRIERRLTEIAPDLDLLRVS 116 >gi|121607087|ref|YP_994894.1| radical SAM protein [Verminephrobacter eiseniae EF01-2] gi|205829923|sp|A1WE19|RLMN_VEREI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|121551727|gb|ABM55876.1| radical SAM enzyme, Cfr family [Verminephrobacter eiseniae EF01-2] Length = 391 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 41/117 (35%), Gaps = 22/117 (18%) Query: 24 AVFC----RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEE 76 AVF R G Q + CRFC T G + QL + Sbjct: 93 AVFIPEDER--G--TLCVSSQAGCAVGCRFCSTGHQGFSRNLSSGEIIAQLWFAEHALRR 148 Query: 77 QWITGEKEGRYCVLTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123 + T ++ V+ G GEPL Q L+ AL G+ + V T+G + Sbjct: 149 RLKTEDRVISNLVMMGMGEPL-QNLAALLPALRVMLDDHGYGLSRRRVTVSTSGVVP 204 >gi|62181614|ref|YP_218031.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129247|gb|AAX66950.1| putative oxidase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716097|gb|EFZ07668.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 391 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L+DL + +E + + Sbjct: 19 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVVWAQGREVKTIFIG 78 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L EI +E N GT+E + ID+ Sbjct: 79 GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 126 >gi|47566901|ref|ZP_00237619.1| molybdopterin cofactor biosynthesis protein A [Bacillus cereus G9241] gi|47556530|gb|EAL14863.1| molybdopterin cofactor biosynthesis protein A [Bacillus cereus G9241] Length = 306 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 8/71 (11%) Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQAL-NKR 110 D+ +Q D++ L G ++ R LTGGEPLL+ D+P LI L + Sbjct: 9 DYAFLQEEF--LLTFDEIERLARLFISMGVEKIR---LTGGEPLLRKDLPQLIARLTKLK 63 Query: 111 GFE-IAVETNG 120 G + I + TNG Sbjct: 64 GLKDIGLTTNG 74 >gi|296536473|ref|ZP_06898567.1| molybdenum cofactor biosynthesis protein A [Roseomonas cervicalis ATCC 49957] gi|296263200|gb|EFH09731.1| molybdenum cofactor biosynthesis protein A [Roseomonas cervicalis ATCC 49957] Length = 330 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ K +++L L G + R LTGGEPL+ Sbjct: 18 DRCDLRCVYCMAEDMTFL----PKAQILTLEELERLCGAFIGLGVERIR---LTGGEPLV 70 Query: 98 QVDV-PLIQALNKR-G----FEIAVETNGT 121 + DV L++ L R G E+ + TNGT Sbjct: 71 RRDVMSLVRNLGARIGPGALRELTLTTNGT 100 >gi|289674339|ref|ZP_06495229.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas syringae pv. syringae FF5] Length = 308 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 G + +Q +++E G + +GGEPL+ Q LI + GF + T+G Sbjct: 12 GQELSTEQWFKVMQEAREMGAAQ---IGFSGGEPLVRQDLAELIAEARRLGFYTNLITSG 68 >gi|70731090|ref|YP_260831.1| molybdenum cofactor biosynthesis protein A [Pseudomonas fluorescens Pf-5] gi|68345389|gb|AAY92995.1| molybdenum cofactor biosynthesis protein A [Pseudomonas fluorescens Pf-5] Length = 365 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 10/62 (16%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ Q +++L L E G ++ R LTGGEPL+ Sbjct: 56 DRCDFRCVYCMAEDMQFLPRQ----RILTLEELYQLAERFVALGTRKIR---LTGGEPLI 108 Query: 98 QV 99 + Sbjct: 109 RP 110 >gi|325918112|ref|ZP_08180267.1| coproporphyrinogen III oxidase, anaerobic [Xanthomonas vesicatoria ATCC 35937] gi|325535658|gb|EGD07499.1| coproporphyrinogen III oxidase, anaerobic [Xanthomonas vesicatoria ATCC 35937] Length = 385 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 10/99 (10%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91 L +C +CD + ++G VD L ++ + V Sbjct: 8 PLSLYVHLPWCVRKCPYCDFNSHAVKGVLPFEEYVDALIRDLDADLPLVWGRVVHSVFFG 67 Query: 92 GGEPLLQVDVPLIQALNKR--------GFEIAVETN-GT 121 GG P L + + L EI +ETN GT Sbjct: 68 GGTPSLFPAEAIDRLLQAAAARLRFAPNLEITLETNPGT 106 >gi|325967665|ref|YP_004243857.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28] gi|323706868|gb|ADY00355.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28] Length = 353 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 10/99 (10%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 LW + +C +C F Y ++L LIE E + GG Sbjct: 2 LWLLFTTGACNLRCSYCGGSFEPHVVPWRITYENNKLKQLIER------DEDATVIFYGG 55 Query: 94 EPLLQVDVPL--IQALNKRGFEIAVETNGTIEPPQGIDW 130 EPLL + + + R F I TNGT+ D+ Sbjct: 56 EPLLNPGFIIWTMNNVKARRFGIQ--TNGTLVSLLPRDY 92 >gi|289191975|ref|YP_003457916.1| Wyosine base formation domain protein [Methanocaldococcus sp. FS406-22] gi|288938425|gb|ADC69180.1| Wyosine base formation domain protein [Methanocaldococcus sp. FS406-22] Length = 314 Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 70 LADLIEEQWITGEKEGRYCVLT-GGEPLLQV-DVPLIQALNKRGFEIAVETNG 120 + D + E+ E ++ ++ GEP L LI+ +K GF V +NG Sbjct: 113 VLDRVGEKKFKEALEPKHVAISLSGEPTLYPYLDELIKIFHKNGFTTFVVSNG 165 >gi|300245631|gb|ADJ93873.1| putative glycyl-radical enzyme activating protein [Clostridia bacterium enrichment culture clone BF] Length = 265 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 10/100 (10%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 G + VD++ +EE + G ++GGEPL Q D L++ +RG A+ET Sbjct: 70 GEQMPVDEVVKRVEEDGAFFWRSGGGVTVSGGEPLQQSDFVAELLKTCRERGIHTALETC 129 Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159 G + + ++ +C A DL + ++K + P + + Sbjct: 130 GHADW-ENVEKVC----AHADLIL---YDIKHIDPDRHQA 161 >gi|297526585|ref|YP_003668609.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710] gi|297255501|gb|ADI31710.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710] Length = 259 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 15/92 (16%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL +C+FC + KG Q+ + + I +++ RY L Sbjct: 48 GCNL-----------RCKFCWSWRYSFYTNKGFFQTPQQVYEKLTR--IAEKRKYRYIRL 94 Query: 91 TGGEPLLQ-VDVPLIQALNKRGFEIAV-ETNG 120 +GGEP + + + L + + + ETNG Sbjct: 95 SGGEPTITMKHLLQLLELLDQTKFVFILETNG 126 >gi|157151404|ref|YP_001450926.1| pyruvate formate-lyase-activating enzyme [Streptococcus gordonii str. Challis substr. CH1] gi|157076198|gb|ABV10881.1| pyruvate formate-lyase-activating enzyme [Streptococcus gordonii str. Challis substr. CH1] Length = 269 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 27/102 (26%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC++ +C++C DT + + + + D+++E Sbjct: 37 VF--LQGCHM-----------RCQYCHNPDT-----WEMETNKSQLRTVDDVLQEALRYK 78 Query: 82 EKEGRY--CVLTGGEPLLQVDVPLIQAL---NKRGFEIAVET 118 G ++GGE LLQ+D LI + G ++T Sbjct: 79 GFWGNKGGITVSGGEALLQIDF-LIAFFTKAKELGIHCTLDT 119 >gi|149276170|ref|ZP_01882314.1| Elongator protein 3/MiaB/NifB [Pedobacter sp. BAL39] gi|149232690|gb|EDM38065.1| Elongator protein 3/MiaB/NifB [Pedobacter sp. BAL39] Length = 298 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121 + Q +++E + + LTGGEPL++ D +I AL K E+ + TNGT Sbjct: 14 LMQPHEIMELAGTFVAQGVKKIRLTGGEPLVRKDAAAIISALGKLPVELVITTNGT 69 >gi|73748162|ref|YP_307401.1| radical SAM domain-containing protein [Dehalococcoides sp. CBDB1] gi|73659878|emb|CAI82485.1| radical SAM domain protein [Dehalococcoides sp. CBDB1] Length = 278 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 31 GCNLWSGREQDRLSAQC---------RFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 GCNL + C F D F Q T + +L L+E +T Sbjct: 47 GCNLECKGCLCKKEINCMALEENLDVVFRDPRFCPPQ-TPSATLSFGKLVSLLENIELTE 105 Query: 82 EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG-TIEPPQGIDWICVSPKAGC 139 G E L +P + + L RG ++ + TNG + ID + VS KA Sbjct: 106 ------VAFEGQEASLDPMLPDICRWLKDRGCKVILHTNGVAMADASHIDDVIVSLKAIT 159 Query: 140 D 140 Sbjct: 160 P 160 >gi|116670001|ref|YP_830934.1| molybdenum cofactor biosynthesis protein A [Arthrobacter sp. FB24] gi|116610110|gb|ABK02834.1| GTP cyclohydrolase subunit MoaA [Arthrobacter sp. FB24] Length = 347 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 21/106 (19%) Query: 21 GRVAVFCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEE 76 GR A R S CNL +C +C G++ K + +++ ++ Sbjct: 10 GRRATDMRLSLTDKCNL-----------RCTYC-MPAEGLEWLAKQAVMSAEEIVRIVR- 56 Query: 77 QWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRG--FEIAVETN 119 R LTGGEPL+ + +I AL + I++ TN Sbjct: 57 -IGVDMLGVRELRLTGGEPLVRADLLDIISALRQAHPELPISMTTN 101 >gi|187735295|ref|YP_001877407.1| Radical SAM domain protein [Akkermansia muciniphila ATCC BAA-835] gi|187425347|gb|ACD04626.1| Radical SAM domain protein [Akkermansia muciniphila ATCC BAA-835] Length = 353 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 6/74 (8%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VP 102 + CR C V ++ LI++ E VLTGG+P+++ D + Sbjct: 26 ALACRHC--RAVAQPRPHPDELTHEEALRLIDQL---AELRPPMLVLTGGDPVMRPDILE 80 Query: 103 LIQALNKRGFEIAV 116 L++A + +G +A+ Sbjct: 81 LVRAASGKGLHVAL 94 >gi|111220312|ref|YP_711106.1| putative radical activating enzyme [Frankia alni ACN14a] gi|111147844|emb|CAJ59508.1| putative radical activating enzyme [Frankia alni ACN14a] Length = 210 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 25/86 (29%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 GC + C C DT G + +L W+ Sbjct: 22 QGC-----------TIGCPGCMSLDT----WDPAGGSTTPIAELLA-----WLCERPGLT 61 Query: 87 YCVLTGGEPLLQ--VDVPLIQALNKR 110 ++GGEP Q L++ L + Sbjct: 62 GVTISGGEPFQQPEPLGALLRGLRAQ 87 >gi|307266180|ref|ZP_07547723.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter wiegelii Rt8.B1] gi|306918784|gb|EFN49015.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter wiegelii Rt8.B1] Length = 317 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 6/84 (7%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + + +++ +I I+ E + TGGEPL++ Sbjct: 18 DRCNLRCIYCMPEEGIPKKDHNEILRNEEILKII---RISAELGIKKVRFTGGEPLVRKG 74 Query: 101 VP--LIQALNKRGFE-IAVETNGT 121 + + + +G E IA+ TNGT Sbjct: 75 IENIIYETSKIKGIEDIALTTNGT 98 >gi|302386178|ref|YP_003822000.1| Radical SAM domain protein [Clostridium saccharolyticum WM1] gi|302196806|gb|ADL04377.1| Radical SAM domain protein [Clostridium saccharolyticum WM1] Length = 337 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 18/90 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C+ C + K ++ LI+E G R + + Sbjct: 11 CNL-----------KCKHC---YQDAGNKKTDELTTEEAKRLIDEIARAG---FRIMIFS 53 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 GGEPL++ D+ L+ G TNG Sbjct: 54 GGEPLMRPDIFTLVSYAAGAGLRPVFGTNG 83 >gi|167567356|ref|ZP_02360272.1| radical SAM domain protein [Burkholderia oklahomensis EO147] gi|167574503|ref|ZP_02367377.1| radical SAM domain protein [Burkholderia oklahomensis C6786] Length = 386 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 22/116 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R ++++ ++E + Sbjct: 38 CNL-----------ACNGCGKIDY--PDPILNQRLSIEECLQAVDECG------APVVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 GGEPLL ++P +++ + KR + + TN + + +D SP + + G Sbjct: 79 AGGEPLLHKEMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYQPSPYFVWSVHLDG 133 >gi|323351046|ref|ZP_08086703.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis VMC66] gi|322122770|gb|EFX94479.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis VMC66] gi|324991334|gb|EGC23267.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK353] gi|325687086|gb|EGD29109.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK72] gi|327462052|gb|EGF08381.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK1057] gi|327474565|gb|EGF19970.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK408] gi|328946888|gb|EGG41025.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK1087] Length = 269 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 27/102 (26%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC++ +C++C DT + + + + D+++E Sbjct: 37 VF--LQGCHM-----------RCQYCHNPDT-----WEMETNKSQLRTVDDVLQEALRYK 78 Query: 82 EKEGRY--CVLTGGEPLLQVDVPLIQAL---NKRGFEIAVET 118 G ++GGE LLQ+D LI + G ++T Sbjct: 79 GFWGNKGGITVSGGEALLQIDF-LIAFFTKAKELGIHCTLDT 119 >gi|296198097|ref|XP_002746562.1| PREDICTED: molybdenum cofactor biosynthesis protein 1 [Callithrix jacchus] Length = 385 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGT-KGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C++C G+Q T K +++ L G + R L Sbjct: 80 CNL-----------RCQYC-MPEEGVQLTPKANLLTTEEILTLARLFVKEGVDKIR---L 124 Query: 91 TGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 TGGEPL++ D V ++ L + G I V TNG Sbjct: 125 TGGEPLIRPDVVDIVAQLQQLEGLRTIGVTTNG 157 >gi|312194131|ref|YP_004014192.1| radical SAM domain protein [Frankia sp. EuI1c] gi|311225467|gb|ADP78322.1| Radical SAM domain protein [Frankia sp. EuI1c] Length = 387 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 8/118 (6%) Query: 34 LWSGREQDRLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 L GR ++ C + C+ ++G++ G ++ D + + + LTG Sbjct: 77 LNYGRASHEVNLGCNYDCEHCYLGLKKFDGLEWD-----DRVRLLHTIRDAGVLWLQLTG 131 Query: 93 GEPLLQVDVPLIQALN-KRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIKGGQE 148 GEP++ + AL G I V +NG+ GI D + P L I G E Sbjct: 132 GEPMIDRHFSDVYALAFDLGMMIDVLSNGSRLANPGILDLLTRRPPHRITLSIYGATE 189 >gi|297585042|ref|YP_003700822.1| YfkB-like domain-containing protein [Bacillus selenitireducens MLS10] gi|297143499|gb|ADI00257.1| YfkB-like domain protein [Bacillus selenitireducens MLS10] Length = 372 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 13/92 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99 +C C + G+ +D + ++E K R +TGGEP++ Q Sbjct: 42 RCEHCAVGY-GLLTKDPEPLPLDTIISRLDEV-----KHLRAFSITGGEPMMNLKQVKQY 95 Query: 100 DVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 +PL++ +RG + + +N T+ + +WI Sbjct: 96 VIPLLRYAKERGAKTQINSNLTMPL-ERYEWI 126 >gi|156937423|ref|YP_001435219.1| radical SAM domain-containing protein [Ignicoccus hospitalis KIN4/I] gi|156566407|gb|ABU81812.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I] Length = 389 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 18/93 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C ++ + + + A + E+ + E +L+ Sbjct: 46 CNL-----------RCLHC---YIRAKAQQDPSELTTEEAKRLSEEMV--EMRIPLVILS 89 Query: 92 GGEPLLQVDV-PLIQALNKRGF-EIAVETNGTI 122 GGEPL++ D +I+ + K F ++++ TNGT+ Sbjct: 90 GGEPLVRKDFWEIIEPMAKAQFPKLSLSTNGTL 122 >gi|126466469|ref|YP_001041578.1| radical SAM domain-containing protein [Staphylothermus marinus F1] gi|126015292|gb|ABN70670.1| Radical SAM domain protein [Staphylothermus marinus F1] Length = 309 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 8/53 (15%) Query: 90 LTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134 LTGGEPL++ D+ ++ + + G +++ TNG+ + +D I VS Sbjct: 63 LTGGEPLIRDDIVDIVHEIRRVGGIVSITTNGSRLAEFAEKLAEEKVDHINVS 115 >gi|116255099|ref|YP_770933.1| molybdenum cofactor biosynthesis protein A [Rhizobium leguminosarum bv. viciae 3841] gi|115259747|emb|CAK02833.1| putative molybdenum cofactor biosynthesis protein A [Rhizobium leguminosarum bv. viciae 3841] Length = 350 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 9/86 (10%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C K +++L L G ++ R LTGGEPL++ + Sbjct: 40 DRCDFRCTYC-MAENMTFLPKKDLLTLEELNRLCSAFIAKGARKIR---LTGGEPLVRKN 95 Query: 101 VP-LIQALNKR---GF-EIAVETNGT 121 + L++ L ++ G E+ + TNG+ Sbjct: 96 IMFLVRELGEKIGSGLDELTLTTNGS 121 >gi|150396791|ref|YP_001327258.1| molybdenum cofactor biosynthesis protein A [Sinorhizobium medicae WSM419] gi|166217890|sp|A6U9U3|MOAA_SINMW RecName: Full=Molybdenum cofactor biosynthesis protein A gi|150028306|gb|ABR60423.1| molybdenum cofactor biosynthesis protein A [Sinorhizobium medicae WSM419] Length = 349 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 10/87 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C K +++L L G ++ R LTGGEPL++ + Sbjct: 38 DRCDFRCTYC-MAEHMTFLPKKDLLTLEELHRLCSAFIAKGVRKLR---LTGGEPLVRKN 93 Query: 101 VP-LIQAL---NKRGF--EIAVETNGT 121 + LI+ L + G E+ + TNG+ Sbjct: 94 IMFLIRELGKEIEAGRLDELTLTTNGS 120 >gi|108761479|ref|YP_634582.1| ribosomal RNA large subunit methyltransferase N [Myxococcus xanthus DK 1622] gi|122980702|sp|Q1CYE1|Y6459_MYXXD RecName: Full=Probable RNA methyltransferase MXAN_6459 gi|108465359|gb|ABF90544.1| radical SAM domain protein [Myxococcus xanthus DK 1622] Length = 358 Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 13/100 (13%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG- 92 + Q + C FC T +G + ++ D + + ++ R V G Sbjct: 104 VICVSSQVGCALACDFCMTGKLGFK----RNLQTWEILDQVLQVREEADRPVRGVVFMGM 159 Query: 93 GEPLLQVDVPLIQA---LNKRGFEIAVE-----TNGTIEP 124 GEPLL L A + GF IA E T G + Sbjct: 160 GEPLLNYKETLRAADILRHPAGFSIAGEAITFSTAGHVPA 199 >gi|303328185|ref|ZP_07358623.1| molybdenum cofactor biosynthesis protein A [Desulfovibrio sp. 3_1_syn3] gi|302861515|gb|EFL84451.1| molybdenum cofactor biosynthesis protein A [Desulfovibrio sp. 3_1_syn3] Length = 337 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 21/99 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + +C +++A ++ I LT Sbjct: 23 CNLRCLYCRSNAKQRCI-----------PHEQVLRYEEMARMV---GIAASLGIGKVRLT 68 Query: 92 GGEPLL-----QVDVPLIQALNKRGFEIAVETNGTIEPP 125 GGEP Q L + TNGT+ P Sbjct: 69 GGEPFARKGCGQFLAMLHARFPDMDLRVT--TNGTLLEP 105 >gi|297158584|gb|ADI08296.1| putative radical activating enzyme [Streptomyces bingchenggensis BCW-1] Length = 240 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 20/71 (28%), Gaps = 15/71 (21%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GC L C C + G V L +L G Sbjct: 35 LQGCGL-----------ACAGCMSRHTW-DPQGGTSRTVASLLELWRAALAQGADG---L 79 Query: 89 VLTGGEPLLQV 99 ++GGEPL Q Sbjct: 80 TVSGGEPLDQP 90 >gi|269125849|ref|YP_003299219.1| Radical SAM domain-containing protein [Thermomonospora curvata DSM 43183] gi|268310807|gb|ACY97181.1| Radical SAM domain protein [Thermomonospora curvata DSM 43183] Length = 410 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 6/66 (9%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A + Q + R+ +D +A I E E +L Sbjct: 44 CNLACDYCYMYEMADQGW------RRQPRRMSRHVLDHVAWRIAEHARANELPEVTVILH 97 Query: 92 GGEPLL 97 GGEPLL Sbjct: 98 GGEPLL 103 >gi|256810072|ref|YP_003127441.1| Wyosine base formation domain protein [Methanocaldococcus fervens AG86] gi|256793272|gb|ACV23941.1| Wyosine base formation domain protein [Methanocaldococcus fervens AG86] Length = 313 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 70 LADLIEEQWITGEKEGRYCVLT-GGEPLLQV-DVPLIQALNKRGFEIAVETNG 120 + D + E+ E ++ ++ GEP L LI+ +K GF V +NG Sbjct: 113 VLDRVGEKKFKEALEPKHVAISLSGEPTLYPYLDELIKIFHKNGFTTFVVSNG 165 >gi|212692834|ref|ZP_03300962.1| hypothetical protein BACDOR_02333 [Bacteroides dorei DSM 17855] gi|237724884|ref|ZP_04555365.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. D4] gi|265754729|ref|ZP_06089781.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 3_1_33FAA] gi|212664623|gb|EEB25195.1| hypothetical protein BACDOR_02333 [Bacteroides dorei DSM 17855] gi|229436622|gb|EEO46699.1| pyruvate-formate lyase-activating enzyme [Bacteroides dorei 5_1_36/D4] gi|263234843|gb|EEZ20411.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 3_1_33FAA] Length = 302 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111 G Y + L IE++ ++ G GGEPLL LI L + G Sbjct: 101 GTEYTAEYLIHEIEKEIPFMDQSGGGVTFCGGEPLLHPKF-LIDMLKRCG 149 >gi|145595265|ref|YP_001159562.1| radical SAM domain-containing protein [Salinispora tropica CNB-440] gi|145304602|gb|ABP55184.1| Radical SAM domain protein [Salinispora tropica CNB-440] Length = 392 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 15/91 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 C L CR G N +Q L+ + G + +T Sbjct: 25 CPLAC--------LHCR-----ASARPGRDRAELNTEQATALMAQVAEFGRPAPLFV-IT 70 Query: 92 GGEPLLQVDVPLI-QALNKRGFEIAVETNGT 121 GG+P + D+ L+ + + G ++V +GT Sbjct: 71 GGDPFQRPDLELLVRRGTELGLPVSVSPSGT 101 >gi|15668431|ref|NP_247229.1| tRNA-modifying enzyme [Methanocaldococcus jannaschii DSM 2661] gi|2501613|sp|Q57705|Y257_METJA RecName: Full=UPF0026 protein MJ0257 gi|159795677|pdb|2Z2U|A Chain A, Crystal Structure Of Archaeal Tyw1 gi|1590987|gb|AAB98244.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 311 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 70 LADLIEEQWITGEKEGRYCVLT-GGEPLLQV-DVPLIQALNKRGFEIAVETNG 120 + D + E+ E ++ ++ GEP L LI+ +K GF V +NG Sbjct: 113 VLDRVGEKKFKEALEPKHVAISLSGEPTLYPYLDELIKIFHKNGFTTFVVSNG 165 >gi|167037275|ref|YP_001664853.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040032|ref|YP_001663017.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter sp. X514] gi|300914120|ref|ZP_07131436.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter sp. X561] gi|307724644|ref|YP_003904395.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter sp. X513] gi|320115692|ref|YP_004185851.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854272|gb|ABY92681.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter sp. X514] gi|166856109|gb|ABY94517.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300889055|gb|EFK84201.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter sp. X561] gi|307581705|gb|ADN55104.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter sp. X513] gi|319928783|gb|ADV79468.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 317 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 6/84 (7%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + + +++ +I I+ E + TGGEPL++ Sbjct: 18 DRCNLRCIYCMPEEGIPKKDHNEILRNEEILKII---RISAELGIKKVRFTGGEPLVRKG 74 Query: 101 VP--LIQALNKRGFE-IAVETNGT 121 + + + +G E IA+ TNGT Sbjct: 75 IENIIYETSKIKGIEDIALTTNGT 98 >gi|328541980|ref|YP_004302089.1| Coenzyme PQQ biosynthesis protein E [Polymorphum gilvum SL003B-26A1] gi|326411730|gb|ADZ68793.1| Coenzyme PQQ biosynthesis protein E [Polymorphum gilvum SL003B-26A1] Length = 361 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 20/130 (15%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R QC +C ++ + D D + G + L+GGEP L+ D+ Sbjct: 17 RCPLQCGYCSNPLELMKA--DRELSTDAWRDAFAQAADLGILQVH---LSGGEPTLRPDL 71 Query: 102 -PLIQALNKRGFEIAVETN------GTIE--PPQGIDWICVSPKAGCDL------KIKGG 146 LI L+ RG + T G +E G+D + VS + + +GG Sbjct: 72 DALIAVLSARGVYTNLITAAVTLSRGKLEAYADAGLDHVQVSFQGARPETTELVGRYRGG 131 Query: 147 QELKLVFPQV 156 E K ++ Sbjct: 132 HEKKRAAARL 141 >gi|297587118|ref|ZP_06945763.1| molybdenum cofactor biosynthesis protein A [Finegoldia magna ATCC 53516] gi|297575099|gb|EFH93818.1| molybdenum cofactor biosynthesis protein A [Finegoldia magna ATCC 53516] Length = 315 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D+ + +C++C + +D+ ++E G K+ R LTGGEPL++ Sbjct: 18 DKCNLRCKYCMPEEGITHLNHDEILTIDETLKIVEVFKDLGIKKVR---LTGGEPLVRNG 74 Query: 101 VP-LIQALNKRGF-EIAVETN 119 + L++ + G EI + TN Sbjct: 75 ILNLVKGIKNMGIEEICMTTN 95 >gi|261343456|ref|ZP_05971101.1| molybdenum cofactor biosynthesis protein A [Providencia rustigianii DSM 4541] gi|282568603|gb|EFB74138.1| molybdenum cofactor biosynthesis protein A [Providencia rustigianii DSM 4541] Length = 326 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 7/83 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D + +C +C + GR+ L ++ + +TGGEP ++ D Sbjct: 21 DVCNFRCTYC----LPDGYKPSGRHEFLTLDEIRRVSRAFADLGTEKVRITGGEPTMRKD 76 Query: 101 V-PLIQALNKRG--FEIAVETNG 120 +I A+ + +IAV TNG Sbjct: 77 FSDIIAAIRENQSIKKIAVTTNG 99 >gi|237709522|ref|ZP_04540003.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 9_1_42FAA] gi|229456578|gb|EEO62299.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 9_1_42FAA] Length = 300 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111 G Y + L IE++ ++ G GGEPLL LI L + G Sbjct: 99 GTEYTAEYLIHEIEKEIPFMDQSGGGVTFCGGEPLLHPKF-LIDMLKRCG 147 >gi|254171904|ref|ZP_04878580.1| Fe-S protein, radical SAM family [Thermococcus sp. AM4] gi|214033800|gb|EEB74626.1| Fe-S protein, radical SAM family [Thermococcus sp. AM4] Length = 361 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 15/105 (14%) Query: 31 GCNLWSGREQ------DRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 GC L E+ + C +C + + V + D+IEE I K Sbjct: 18 GCQLCVRGEKLVLFTTGKCPRDCFYCPLSPWRREDVVYANERPVKSVDDIIEEAMIQEAK 77 Query: 84 EGRYCVLTGGEPLLQVDVPL--IQALNK---RGFEIAVETNGTIE 123 +TGG+PL ++D + I+AL + F + + T G + Sbjct: 78 GAG---VTGGDPLARLDRTVQYIRALKENFGEDFHVHLYTTGALA 119 >gi|254166575|ref|ZP_04873429.1| hypothetical protein ABOONEI_1667 [Aciduliprofundum boonei T469] gi|197624185|gb|EDY36746.1| hypothetical protein ABOONEI_1667 [Aciduliprofundum boonei T469] Length = 279 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 9/77 (11%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQ 105 C FC + + + +I+ E L GGEP L+ D + +I+ Sbjct: 3 CPFC-----NVWNDRTPELPTKDVFKIIDRL---AESTVTVLSLEGGEPTLRKDILDIIK 54 Query: 106 ALNKRGFEIAVETNGTI 122 + + F + + TNGT+ Sbjct: 55 YAHDQSFYLFMTTNGTL 71 >gi|194018050|ref|ZP_03056656.1| YfkA [Bacillus pumilus ATCC 7061] gi|194010295|gb|EDW19871.1| YfkA [Bacillus pumilus ATCC 7061] Length = 373 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 6/45 (13%) Query: 86 RYCVLTGGEPLLQVD------VPLIQALNKRGFEIAVETNGTIEP 124 R +TGGEP+L + VPL++ ++RG + +N T++ Sbjct: 79 RSISITGGEPMLSLKSVREYVVPLLKYAHERGVRTQINSNLTLDL 123 >gi|150388420|ref|YP_001318469.1| glycyl-radical activating family protein [Alkaliphilus metalliredigens QYMF] gi|149948282|gb|ABR46810.1| glycyl-radical enzyme activating protein family [Alkaliphilus metalliredigens QYMF] Length = 297 Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 44/139 (31%), Gaps = 44/139 (31%) Query: 24 AVFCRFSGCNLWSGREQDRLSA-----------QCRFC----DT---------------- 52 VF GC L + S +C C DT Sbjct: 23 TVF--LKGCPLNCWWCHNPESKDRKQQILFTQQRCIHCGSCHDTCSQKAIQEGKINGENC 80 Query: 53 -------DFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-- 101 D + + G V ++ IE+ I E+ +GGEPL Q + Sbjct: 81 TLCNKCVDRCPTEALELVGKDMTVAEVMGEIEKDRIFFEQSKGGVTFSGGEPLSQGEFLY 140 Query: 102 PLIQALNKRGFEIAVETNG 120 L++ ++G V+T+G Sbjct: 141 ELLRVCGQKGIHRGVDTSG 159 >gi|324009633|gb|EGB78852.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 57-2] Length = 352 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 45 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 100 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 101 RDFTDIIAAVRENNTIRQIAVTTNG 125 >gi|284166232|ref|YP_003404511.1| Wyosine base formation domain protein [Haloterrigena turkmenica DSM 5511] gi|284015887|gb|ADB61838.1| Wyosine base formation domain protein [Haloterrigena turkmenica DSM 5511] Length = 345 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 21/107 (19%) Query: 38 REQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADL-----------------IEEQW 78 R + +C FC D + + + + D + + Sbjct: 76 TPVVRCNERCVFCWRDHQGHTYEMDDVEWDDPEAVVDASIRLQKKLLSGFGGNDEVPREV 135 Query: 79 ITGEKEGRYCVLT-GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 E R+ ++ GEP L +P LI+A R + +NGT Sbjct: 136 FEQAMEPRHVAISLDGEPTLYPYLPELIEAFRDRDITTFLVSNGTRP 182 >gi|220928570|ref|YP_002505479.1| radical SAM protein [Clostridium cellulolyticum H10] gi|219998898|gb|ACL75499.1| Radical SAM domain protein [Clostridium cellulolyticum H10] Length = 362 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 13/100 (13%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R C + + + ++ E G + +L Sbjct: 71 CNLRCSGCYARELHSCS---------DEVRDSQMTCQRWNEIFREAESLG---ISFILLA 118 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GGEPL++ DV +++A + + + TNG + ID Sbjct: 119 GGEPLMRRDV-VVKAADSKNIIFPIFTNGLLMNNFYIDLF 157 >gi|91204397|emb|CAJ70897.1| similar to molybdenum cofactor biosynthesis protein A [Candidatus Kuenenia stuttgartiensis] Length = 335 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Query: 87 YCVLTG-GEPLLQV-DVPLIQALNKRGFEIAVETNG 120 LTG GEPLL + +I +G ++ + TNG Sbjct: 77 NVTLTGWGEPLLHPQLMEMIAYTKNKGHKVGLTTNG 112 >gi|86359709|ref|YP_471600.1| hypothetical protein RHE_PA00004 [Rhizobium etli CFN 42] gi|86283811|gb|ABC92873.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 360 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 7/86 (8%) Query: 50 CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL----IQ 105 CD + +Y+VD L D + R ++GGEPLL + Sbjct: 94 CD-QLCVMCSQPPKKYHVD-LFDQFTVAATLAPENAR-ITISGGEPLLHKRRLFQFLAVA 150 Query: 106 ALNKRGFEIAVETNGTIEPPQGIDWI 131 A + V TNG P I I Sbjct: 151 AKARPDISFHVLTNGQFFEPGDIAII 176 >gi|58038709|ref|YP_190673.1| lysine 2,3-aminomutase [Gluconobacter oxydans 621H] gi|58001123|gb|AAW60017.1| Lysine 2,3-aminomutase [Gluconobacter oxydans 621H] Length = 356 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 47 CRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105 CRFC F G GG + QL ++ W+ + R +LTGG+PL+ L Sbjct: 121 CRFC---FRREHVGPGGGLLSNAQLETALD--WVRQHPDIREIILTGGDPLMLAPRRLKH 175 Query: 106 ALNKRGFEIAVET 118 + +ET Sbjct: 176 IVQSLSGIPHIET 188 >gi|325696320|gb|EGD38211.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK160] Length = 269 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 27/102 (26%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC++ +C++C DT + + + + D+++E Sbjct: 37 VF--LQGCHM-----------RCQYCHNPDT-----WEMETNKSQLRTVDDVLQEALRYK 78 Query: 82 EKEGRY--CVLTGGEPLLQVDVPLIQAL---NKRGFEIAVET 118 G ++GGE LLQ+D LI + G ++T Sbjct: 79 GFWGNKGGITVSGGEALLQIDF-LIAFFTKAKELGIHCTLDT 119 >gi|324993692|gb|EGC25611.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK405] gi|324994995|gb|EGC26908.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK678] gi|327462962|gb|EGF09283.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK1] Length = 269 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 27/102 (26%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF GC++ +C++C DT + + + + D+++E Sbjct: 37 VF--LQGCHM-----------RCQYCHNPDT-----WEMETNKSQLRTVDDVLQEALRYK 78 Query: 82 EKEGRY--CVLTGGEPLLQVDVPLIQAL---NKRGFEIAVET 118 G ++GGE LLQ+D LI + G ++T Sbjct: 79 GFWGNKGGITVSGGEALLQIDF-LIAFFTKAKELGIHCTLDT 119 >gi|222837080|gb|EEE75459.1| predicted protein [Populus trichocarpa] Length = 498 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 33 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFARLGTEKVR---LTGGEPSLR 88 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 89 RDFTDIIAAVRENDAIRQIAVTTNG 113 >gi|124485146|ref|YP_001029762.1| hypothetical protein Mlab_0319 [Methanocorpusculum labreanum Z] gi|124362687|gb|ABN06495.1| Radical SAM domain protein [Methanocorpusculum labreanum Z] Length = 491 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 6/90 (6%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 L + +R + +C FC F + D++ ++ +G Sbjct: 92 LANIDVTNRCNLKCEFC---FANARACGYIYEPTFDEITSMLALLRNEKPVPCPAVQFSG 148 Query: 93 GEPLLQVDV-PLIQALNKRGF-EIAVETNG 120 GEP ++ D+ LI+ + GF ++ + +NG Sbjct: 149 GEPTMRDDLVDLIKKARELGFSQVQMASNG 178 >gi|14589981|ref|NP_142042.1| hypothetical protein PH0020 [Pyrococcus horikoshii OT3] gi|3256405|dbj|BAA29088.1| 238aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 238 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 16/70 (22%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GCNL +C FC ++ QG + N ++L ++ + Sbjct: 24 LCGCNL-----------RCPFC-HNWRIAQGEGCFKLNREELIAEVDANSFLVDCFH--- 68 Query: 89 VLTGGEPLLQ 98 +TGGEPL+Q Sbjct: 69 -ITGGEPLIQ 77 >gi|219667931|ref|YP_002458366.1| radical SAM protein [Desulfitobacterium hafniense DCB-2] gi|219538191|gb|ACL19930.1| Radical SAM domain protein [Desulfitobacterium hafniense DCB-2] Length = 441 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 18/95 (18%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL +C C F+ + + + L Sbjct: 106 GCNL-----------RCPVC---FMAANDFRPDPNPSLEALGEKYRYILRHTNPDTSIQL 151 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVE--TNGTI 122 TGGEP + D+ +I+ + GF+ A+E TNG + Sbjct: 152 TGGEPTTREDLADIIRLGREIGFQ-AIEVNTNGVV 185 >gi|325295010|ref|YP_004281524.1| molybdenum cofactor biosynthesis protein A [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065458|gb|ADY73465.1| molybdenum cofactor biosynthesis protein A [Desulfurobacterium thermolithotrophum DSM 11699] Length = 324 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 12/94 (12%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL--ADLIEEQWITGEKEGRYCVL 90 N DR + +CR+C +GTK + + L ++ E + E L Sbjct: 5 NYLRISVTDRCNFRCRYC-----MPEGTKKFIPHSEILRYEEITEIVRVFTEFGIDSVRL 59 Query: 91 TGGEPL----LQVDVPLIQALNKRGFEIAVETNG 120 TGGEPL ++ + I+ L + +I++ TNG Sbjct: 60 TGGEPLVRKGIESLIVQIRELEEI-RDISLTTNG 92 >gi|291086451|ref|ZP_06355845.2| hypothetical protein CIT292_10523 [Citrobacter youngae ATCC 29220] gi|291068291|gb|EFE06400.1| arylsulfatase regulator [Citrobacter youngae ATCC 29220] Length = 370 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 4/68 (5%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 +GC + + R + CR+C I + LA I + Sbjct: 2 TGCQVMAKPASSRCNLDCRYC----FYIDKPTQPEMDDATLAAFIRQHIAAQPGPEVMFA 57 Query: 90 LTGGEPLL 97 GGEP L Sbjct: 58 WQGGEPTL 65 >gi|115351754|ref|YP_773593.1| hypothetical protein Bamb_1702 [Burkholderia ambifaria AMMD] gi|115281742|gb|ABI87259.1| conserved hypothetical protein [Burkholderia ambifaria AMMD] Length = 292 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 27/128 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + +++ DL + + + + Sbjct: 49 CNLTCAECCSLSPL-----------LPEWYASPESIES--DLRKAAKVLSPRIFKLV--- 92 Query: 92 GGEPLLQV-DVPLIQALNKRGF--EIAVETNGTI--EPP----QGIDWICVS--PKAGCD 140 GGEPLL V L++ + G EI+V TNG E P Q +D + +S PK Sbjct: 93 GGEPLLHPALVELVERVRGTGIAPEISVTTNGLKLGEMPDAFWQAVDALTISRYPKPALS 152 Query: 141 LKIKGGQE 148 + E Sbjct: 153 PDLIAHVE 160 >gi|91201364|emb|CAJ74424.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 335 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 19/90 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + + + G ++ L ++ G Y T Sbjct: 12 CNL-----------SCHHC----LDGRHSGDGNLKIEILERILRNARRHGFD---YISFT 53 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 GGEP L ++ ++K G+ TNG Sbjct: 54 GGEPTLHPGFTEMLTMVSKAGYNFGFVTNG 83 >gi|254880766|ref|ZP_05253476.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 4_3_47FAA] gi|319639776|ref|ZP_07994506.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 3_1_40A] gi|254833559|gb|EET13868.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 4_3_47FAA] gi|317388593|gb|EFV69442.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 3_1_40A] Length = 302 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111 G Y + L IE++ ++ G GGEPLL + LI L + G Sbjct: 101 GTEYTAEYLMHEIEKEIPFMDQSGGGVTFCGGEPLLHPEF-LIDILKRCG 149 >gi|238928042|ref|ZP_04659802.1| radical SAM domain protein [Selenomonas flueggei ATCC 43531] gi|238884002|gb|EEQ47640.1| radical SAM domain protein [Selenomonas flueggei ATCC 43531] Length = 361 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 17/87 (19%) Query: 46 QCRFC-----DT--DFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLT---GGE 94 C +C DT + D+L ++I + G K LT GGE Sbjct: 42 HCAYCTYGSGDTYQKTENRDSIEHRDMIPWDKLQEIIADMGAMGVKA-----LTFSGGGE 96 Query: 95 PLLQVDV-PLIQALNKRGFEIAVETNG 120 PL + +Q + G ++++ TNG Sbjct: 97 PLTYPHIREAVQQVKSHGIDLSLITNG 123 >gi|157691530|ref|YP_001485992.1| thioredoxin [Bacillus pumilus SAFR-032] gi|157680288|gb|ABV61432.1| possible thioredoxin [Bacillus pumilus SAFR-032] Length = 373 Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 6/45 (13%) Query: 86 RYCVLTGGEPLLQVD------VPLIQALNKRGFEIAVETNGTIEP 124 R +TGGEP+L + VPL++ ++RG + +N T++ Sbjct: 79 RSISITGGEPMLSLKSVREYVVPLLKYAHERGVRTQINSNLTLDL 123 >gi|308070036|ref|YP_003871641.1| Molybdenum cofactor biosynthesis protein A (narA protein) [Paenibacillus polymyxa E681] gi|305859315|gb|ADM71103.1| Molybdenum cofactor biosynthesis protein A (narA protein) [Paenibacillus polymyxa E681] Length = 337 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 11/105 (10%) Query: 41 DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +CR+C + G + + ++ I +TGGEPLL+ Sbjct: 22 DRCNFRCRYCMPEEIFGHDYPFLPKEKILTFEEITRLSRIFVSLGVTKLRITGGEPLLRK 81 Query: 100 DVP-LIQALNKR-GFE-IAVETNGTIEP-------PQGIDWICVS 134 D+ LI +L + G E IA+ TNG P G+ + VS Sbjct: 82 DLSLLIHSLTQLDGVEDIAMTTNGVFLPKYAVALREAGLKRVTVS 126 >gi|170769101|ref|ZP_02903554.1| molybdenum cofactor biosynthesis protein A [Escherichia albertii TW07627] gi|170122173|gb|EDS91104.1| molybdenum cofactor biosynthesis protein A [Escherichia albertii TW07627] Length = 329 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 19/137 (13%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77 Query: 99 VD-VPLIQALNKRG--FEIAVETNG-------TIEPPQGIDWICVSP---KAGCDLKIKG 145 D + +I A+ + +IAV TNG G+ I VS A I G Sbjct: 78 RDFIDIIAAVRENDAIRQIAVTTNGYRLERDVANWRDAGLTGINVSVDSLDARQFHAITG 137 Query: 146 GQELKLVFPQVNVSPEN 162 + + V ++ + E Sbjct: 138 QDKFRQVMAGIDAAFEA 154 >gi|166031166|ref|ZP_02233995.1| hypothetical protein DORFOR_00852 [Dorea formicigenerans ATCC 27755] gi|166029013|gb|EDR47770.1| hypothetical protein DORFOR_00852 [Dorea formicigenerans ATCC 27755] Length = 464 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 27/103 (26%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD--QLADLIEEQWITGEKEGRY-- 87 CNL CR+C +G GR + ++ + I R Sbjct: 116 CNL-----------ACRYC----FAEEGEYHGRRALMSYEVGKKALDFLIANSGSRRNLE 160 Query: 88 CVLTGGEPLL--QVDVPLI------QALNKRGFEIAVETNGTI 122 GGEPL+ QV L+ + L+ + F V TNG + Sbjct: 161 VDFFGGEPLMNWQVVKDLVAYGREQEKLHDKNFRFTVTTNGVL 203 >gi|160944519|ref|ZP_02091747.1| hypothetical protein FAEPRAM212_02032 [Faecalibacterium prausnitzii M21/2] gi|158444301|gb|EDP21305.1| hypothetical protein FAEPRAM212_02032 [Faecalibacterium prausnitzii M21/2] Length = 325 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 18/91 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR+C + K R V + + + + +T Sbjct: 20 CNL-----------RCRYC----MPDGVEKLEREAVLTYEEFLRLAALFAQCGIDTVRVT 64 Query: 92 GGEPLLQVDVP-LIQALNK-RGF-EIAVETN 119 GGEPL++ +V L+ L G + + TN Sbjct: 65 GGEPLVRKNVAQLVAGLKATPGIRRVTLTTN 95 >gi|91787237|ref|YP_548189.1| putative oxygen-independent coproporphyrinogen III oxidase [Polaromonas sp. JS666] gi|91696462|gb|ABE43291.1| Putative oxygen-independent coproporphyrinogen III oxidase [Polaromonas sp. JS666] Length = 394 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 10/101 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91 L +C +CD + + G + +D L +E + + + Sbjct: 20 PLSLYVHLPWCLKKCPYCDFNSHEVSGEMPEQRYLDALIADLEAALPLVWGRTVHSIFIG 79 Query: 92 GGEPLL---QVDVPLI-----QALNKRGFEIAVETN-GTIE 123 GG P L Q L+ + + EI +E N GT E Sbjct: 80 GGTPSLFSPQAIDRLLGDIRARLRLEADCEITLEANPGTFE 120 >gi|310830987|ref|YP_003966088.1| Anaerobic ribonucleoside-triphosphate reductase activating protein [Paenibacillus polymyxa SC2] gi|309250454|gb|ADO60020.1| Anaerobic ribonucleoside-triphosphate reductase activating protein [Paenibacillus polymyxa SC2] Length = 112 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 9/53 (16%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI---QALNKRGFEI 114 + +++A+ + + + +GGEP Q + LI + L +G I Sbjct: 1 MSTNEVAEHVLQ------NPINHVTFSGGEPFSQNEKELIYLAKELKNKGRNI 47 >gi|308270291|emb|CBX26903.1| hypothetical protein N47_A09320 [uncultured Desulfobacterium sp.] Length = 370 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 16/70 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + T + G TK VDQ+A +LT Sbjct: 31 CNLACIHCRASALN------TSYTGELDTKASFKLVDQIA----------VAGNPIVILT 74 Query: 92 GGEPLLQVDV 101 GGEPLL+ D+ Sbjct: 75 GGEPLLRPDI 84 >gi|226311750|ref|YP_002771644.1| hypothetical protein BBR47_21630 [Brevibacillus brevis NBRC 100599] gi|226094698|dbj|BAH43140.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 371 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 38/165 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C DT VD + ++E K+ +T Sbjct: 41 CNLRC--------EHCAVGDTLRYKDDPA----LPVDLILRRLDEA-----KDLLTLSIT 83 Query: 92 GGEPLLQVDV------PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 GGEP+ P++Q RG + +N ++ + +L + Sbjct: 84 GGEPMYSERTVKTVIAPILQYAADRGLRTQINSNMSMPFSR------------YELILPY 131 Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAIS 190 + + + +PE + + + + QP+ E + I Sbjct: 132 IDVMHISWNWS--TPEEFHDIVYAK-ARQPVSMKRAEAQFHEMIE 173 >gi|218134604|ref|ZP_03463408.1| hypothetical protein BACPEC_02507 [Bacteroides pectinophilus ATCC 43243] gi|217989989|gb|EEC56000.1| hypothetical protein BACPEC_02507 [Bacteroides pectinophilus ATCC 43243] Length = 354 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 4/79 (5%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQ 98 D +C+ C F G ++ Q+ +++ E + + Y +TGG+P+L Sbjct: 16 DECDQRCKHCYI-FSGKGCSELKSMTWKQMQEVVANCEDFCRIYNKLPYFYITGGDPILH 74 Query: 99 VDV-PLIQALNKRGFEIAV 116 D L+ L RG + Sbjct: 75 PDFWKLMVLLKSRGIPFTI 93 >gi|260836709|ref|XP_002613348.1| hypothetical protein BRAFLDRAFT_118735 [Branchiostoma floridae] gi|229298733|gb|EEN69357.1| hypothetical protein BRAFLDRAFT_118735 [Branchiostoma floridae] Length = 657 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 18/89 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C++C G+ T + + +++ L G + R L Sbjct: 88 CNL-----------RCQYC-MPEAGVDLTPKQKLLSTEEVVTLARLFVSQGVNKIR---L 132 Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVET 118 TGGEPL++ D V ++ LNK + +ET Sbjct: 133 TGGEPLVRPDVVDIVSELNKL-RSLGLET 160 >gi|154503581|ref|ZP_02040641.1| hypothetical protein RUMGNA_01405 [Ruminococcus gnavus ATCC 29149] gi|260589910|ref|ZP_05855823.1| putative arylsulfatase regulator [Blautia hansenii DSM 20583] gi|153795681|gb|EDN78101.1| hypothetical protein RUMGNA_01405 [Ruminococcus gnavus ATCC 29149] gi|260539717|gb|EEX20286.1| putative arylsulfatase regulator [Blautia hansenii DSM 20583] Length = 435 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 24/101 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDF--VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 CNL C +C + G + T+ + D+ + Q + Y Sbjct: 94 CNL-----------ACIYC---YEGAGCRTTRMNKATADRFIGFMINQAKARNSKSMYIN 139 Query: 90 LTGGEPLLQVDVPL--IQALNKRGFEIAVE------TNGTI 122 L GGEPLL ++ + AL K E +E TNGT+ Sbjct: 140 LFGGEPLLNIECGFYILDALKKFCAEKNIEFASGIITNGTL 180 >gi|86750500|ref|YP_486996.1| molybdenum cofactor biosynthesis protein A [Rhodopseudomonas palustris HaA2] gi|86573528|gb|ABD08085.1| GTP cyclohydrolase subunit MoaA [Rhodopseudomonas palustris HaA2] Length = 345 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ + +++L L + G ++ R LTGGEPL+ Sbjct: 34 DRCDFRCAYCMSEDMTFL----PRADLLTLEELDRLCSAFIVRGVRKLR---LTGGEPLV 86 Query: 98 QVD-VPLIQAL---NKRG--FEIAVETNGT 121 + + + L+++L G E+ + TNG+ Sbjct: 87 RRNMMSLVRSLSRHLDTGALRELTLTTNGS 116 >gi|119775502|ref|YP_928242.1| ribosomal RNA large subunit methyltransferase N [Shewanella amazonensis SB2B] gi|205829877|sp|A1S866|RLMN_SHEAM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|119768002|gb|ABM00573.1| conserved hypothetical protein [Shewanella amazonensis SB2B] Length = 373 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 59/178 (33%), Gaps = 34/178 (19%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI----------TGEKEG 85 Q + +C FC T G +++++ + W TGE+ Sbjct: 107 CVSSQVGCALECTFCSTAQQGFN-------RNLTVSEIVGQIWRVSHFLGFQKETGERPI 159 Query: 86 RYCVLTG-GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSP 135 V+ G GEPLL + VP + L+ GF + + T+G + + D I V+ Sbjct: 160 SNVVMMGMGEPLLNLANVVPAMNIMLDDYGFGLSKRRVTLSTSGVVPALDKLGDVIDVA- 218 Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 + EL+ V +N R L+ + + Y Sbjct: 219 -LAVSIHAPN-DELRDVLVPINKKYPLQEFLAAIRRYLE----KSNANRGRVTLEYVM 270 >gi|315640725|ref|ZP_07895827.1| pyruvate formate-lyase activating enzyme [Enterococcus italicus DSM 15952] gi|315483480|gb|EFU73974.1| pyruvate formate-lyase activating enzyme [Enterococcus italicus DSM 15952] Length = 255 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 23/103 (22%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC +C+FC DT + R D LA+ ++ Q Sbjct: 23 VRFVIFSQGC-----------RMRCQFCHNPDT-WKIDDPKASLRSADDVLAEALKYQSY 70 Query: 80 TGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120 GEK G ++GGEP L + L + +G ++T G Sbjct: 71 WGEKGG--ITVSGGEPLLQLDFLLDLFKKAKAKGIHTTIDTCG 111 >gi|294778024|ref|ZP_06743458.1| glycyl-radical enzyme activating family protein [Bacteroides vulgatus PC510] gi|294448082|gb|EFG16648.1| glycyl-radical enzyme activating family protein [Bacteroides vulgatus PC510] Length = 302 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111 G Y + L IE++ ++ G GGEPLL + LI L + G Sbjct: 101 GTEYTAEYLMHEIEKEIPFMDQSGGGVTFCGGEPLLHPEF-LIDILKRCG 149 >gi|239993006|ref|ZP_04713530.1| molybdenum cofactor biosynthesis protein A [Alteromonas macleodii ATCC 27126] Length = 322 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 29/147 (19%) Query: 46 QCRFCDTDFVGIQGTKGGR----YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 +C++C G +G ++++ L++ G + R LTGGEP L+ D Sbjct: 24 RCQYC-----LPDGYEGPTSDQFMTLNEIDTLLKAFAKLGTSKVR---LTGGEPTLRRDF 75 Query: 102 PLIQALNKR--GFE-IAVETNGTI-------EPPQGIDWICVS-----PKAGCDLKIKGG 146 I L G E +A+ T+G G+ + VS P+ I G Sbjct: 76 LDILRLTSNTPGIERVAMTTHGARMEKFAHQWKEAGLHQVNVSIDSLDPRQFA--AITGQ 133 Query: 147 QELKLVFPQVNVSPENYIGFDFERFSL 173 +LK V ++ + + + L Sbjct: 134 DKLKAVLRGLDAAIDAGLDVKVNSVLL 160 >gi|225376307|ref|ZP_03753528.1| hypothetical protein ROSEINA2194_01945 [Roseburia inulinivorans DSM 16841] gi|225211953|gb|EEG94307.1| hypothetical protein ROSEINA2194_01945 [Roseburia inulinivorans DSM 16841] Length = 306 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKR-GFE-IAVETN 119 G+ + ++++ I + LTGGEPL++ V LI L + G E + + TN Sbjct: 10 GQEELLTYDEIVKLAGIYRSLGIKNVKLTGGEPLVREHVDELIFRLKEECGMEKVTLTTN 69 Query: 120 GTIEPPQGID 129 G I Q +D Sbjct: 70 G-ILLEQQLD 78 >gi|222102888|ref|YP_002539927.1| molybdenum cofactor biosynthesis protein A [Agrobacterium vitis S4] gi|221739489|gb|ACM40222.1| molybdenum cofactor biosynthesis protein A [Agrobacterium vitis S4] Length = 342 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 22/109 (20%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 GR + R S DR +C +C K ++D+L L + Sbjct: 19 GRRVTYLRLS--------VTDRCDLRCMYC-MPENMTFMPKRDVLSIDELERLAVAFIRS 69 Query: 81 GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF--------EIAVETNGT 121 G R LTGGEPL++ + I + G E+ + TNGT Sbjct: 70 GVTRIR---LTGGEPLVRKGI--IDLIRSLGRNLQGGPLQELTLTTNGT 113 >gi|150003986|ref|YP_001298730.1| pyruvate-formate lyase-activating enzyme [Bacteroides vulgatus ATCC 8482] gi|149932410|gb|ABR39108.1| pyruvate-formate lyase-activating enzyme [Bacteroides vulgatus ATCC 8482] Length = 302 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111 G Y + L IE++ ++ G GGEPLL + LI L + G Sbjct: 101 GTEYTAEYLMHEIEKEIPFMDQSGGGVTFCGGEPLLHPEF-LIDILKRCG 149 >gi|114607310|ref|XP_001173946.1| PREDICTED: molybdenum cofactor synthesis-step 1 protein isoform 4 [Pan troglodytes] Length = 620 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + K +++ L G + R LT Sbjct: 80 CNL-----------RCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGVDKIR---LT 125 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GGEPL++ D V ++ L + G I V TNG Sbjct: 126 GGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNG 157 >gi|87200079|ref|YP_497336.1| coproporphyrinogen III oxidase [Novosphingobium aromaticivorans DSM 12444] gi|87135760|gb|ABD26502.1| Putative oxygen-independent coproporphyrinogen III oxidase [Novosphingobium aromaticivorans DSM 12444] Length = 384 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 10/96 (10%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 L A+C +CD + T + LAD+ E +T + G Sbjct: 3 PLALYVHWPFCLAKCPYCDFNSHVRARTDIAAWQAALLADMRHEARLTPGRPLSSIFFGG 62 Query: 93 GEPLLQVDVPLIQALNKR---------GFEIAVETN 119 G P L L++AL G EI +E N Sbjct: 63 GTPSLMP-PALVEALLAEAERLWGFAPGIEITLEAN 97 >gi|91774113|ref|YP_566805.1| molybdenum cofactor biosynthesis protein A [Methanococcoides burtonii DSM 6242] gi|91713128|gb|ABE53055.1| Molybdenum cofactor biosynthesis protein A [Methanococcoides burtonii DSM 6242] Length = 318 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 26/111 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C + ++ ++ G + ++ + Sbjct: 27 CNL-----------DCIYC---HSEGDEGSRKEMSAKTISVIVSAAAKFGVNKVKF---S 69 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134 GGEPL++ D +++ L K +++V TNG G+D + VS Sbjct: 70 GGEPLVRKDFEDILRKLPKL-KDVSVTTNGVFLKERAFSLKEAGLDRVNVS 119 >gi|86605975|ref|YP_474738.1| anaerobic ribonucleotide reductase activating protein [Synechococcus sp. JA-3-3Ab] gi|86554517|gb|ABC99475.1| anaerobic ribonucleotide reductase activating protein [Synechococcus sp. JA-3-3Ab] Length = 210 Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 22/97 (22%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE-EQWI 79 GR AV GC +C C + ++QL + + + I Sbjct: 34 GRRAV-VWVQGC-----------LRECPGC-------FNPTSWPFEINQLVKITDLAEQI 74 Query: 80 TGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114 +GGEP Q L + L +G + Sbjct: 75 LSNPRNEGVTFSGGEPFWQAPALASLARLLKAKGLTV 111 >gi|313895315|ref|ZP_07828872.1| radical SAM domain protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312976210|gb|EFR41668.1| radical SAM domain protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 358 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 50/155 (32%), Gaps = 31/155 (20%) Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVE 117 K + + +E G + ++GGEPL D+ +++A+ F I++ Sbjct: 67 SPKKRWLTPEIIKRFCDEADALGLAQ---MSVSGGEPLTFPDLEDVVKAIGPDRFHISMS 123 Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL-----------VFPQVNVSPENYIGF 166 TNG + + W+ K G +LK+ + S Sbjct: 124 TNGALLTLEKAKWV----------KSIGIDKLKISLDCIDENGPSFHDKGQTSAALRALD 173 Query: 167 DFERFSLQPMDGPF------LEENTNLAISYCFQN 195 + LQP+ E T YC + Sbjct: 174 NALAADLQPVAQTVVTRQNCQTEQTERMAEYCQER 208 >gi|289423115|ref|ZP_06424930.1| arylsulfatase regulator [Peptostreptococcus anaerobius 653-L] gi|289156446|gb|EFD05096.1| arylsulfatase regulator [Peptostreptococcus anaerobius 653-L] Length = 457 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 31/114 (27%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA----DLIEEQWITGEKEGRY 87 CNL +C++C QG GG+ + L + +G ++ Sbjct: 104 CNL-----------KCKYC----FAKQGDFGGKAELMPLEVGKKAIDYLIANSGSRKNLE 148 Query: 88 CVLTGGEPLLQVDVPLIQALNKRGFEIA----------VETNGTIEPPQGIDWI 131 GGEPL+ + +++AL G E+ + TNG + + ID+I Sbjct: 149 IDFFGGEPLM--NWEVVKALVAYGREVEKPAGKNIRYTITTNGVLLDDEKIDFI 200 >gi|259907251|ref|YP_002647607.1| pyrroloquinoline quinone biosynthesis protein PqqE [Erwinia pyrifoliae Ep1/96] gi|224962873|emb|CAX54354.1| Coenzyme PQQ synthesis protein E (Pyrroloquinoline quinone biosynthesis protein E) [Erwinia pyrifoliae Ep1/96] Length = 341 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%) Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 Q D+ ++ G + +GGEPL++ D+P LI++ GF + T+G Sbjct: 1 MTTAQWIDVFKQARAMGAVQ---IGFSGGEPLVRKDLPELIRSARDLGFYTNLITSG 54 >gi|170760779|ref|YP_001786591.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum A3 str. Loch Maree] gi|169407768|gb|ACA56179.1| pyruvate formate-lyase-activating enzyme (PFL-activatingenzyme) (Formate-C-acetyltransferase-activating enzyme) [Clostridium botulinum A3 str. Loch Maree] Length = 299 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 3/89 (3%) Query: 38 REQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 D+ C C T+ G Y + ++ + + E+ ++GGE + Sbjct: 79 TINDKKCIGCLKCVTNCSNKALKNEGEYKEIKEIVEKCIQDKDFFEESNGGVTISGGEGM 138 Query: 97 LQV--DVPLIQALNKRGFEIAVETNGTIE 123 Q L+ + K +A+ET G I+ Sbjct: 139 NQPTFLKELVISFKKENIHVAIETTGYID 167 >gi|114607308|ref|XP_001173932.1| PREDICTED: molybdenum cofactor synthesis-step 1 protein isoform 1 [Pan troglodytes] Length = 638 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + K +++ L G + R LT Sbjct: 80 CNL-----------RCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGVDKIR---LT 125 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GGEPL++ D V ++ L + G I V TNG Sbjct: 126 GGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNG 157 >gi|152984897|ref|YP_001345880.1| coproporphyrinogen III oxidase [Pseudomonas aeruginosa PA7] gi|150960055|gb|ABR82080.1| probable oxidase [Pseudomonas aeruginosa PA7] Length = 384 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 35/108 (32%), Gaps = 10/108 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLT 91 L +C +CD + VD LADL ++ + Sbjct: 11 PLALYVHIPWCVRKCPYCDFNSHAAGPELPEEAYVDALLADLEQDLRHVHGRRLGSIFFG 70 Query: 92 GGEPLLQVDVPLIQALN--------KRGFEIAVETN-GTIEPPQGIDW 130 GG P L L + L G EI +E N GT E + D+ Sbjct: 71 GGTPSLFSAKALGRLLEGVERRVGFADGIEITLEANPGTFEQAKFADY 118 >gi|262374093|ref|ZP_06067370.1| conserved hypothetical protein [Acinetobacter junii SH205] gi|262311104|gb|EEY92191.1| conserved hypothetical protein [Acinetobacter junii SH205] Length = 384 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 18/117 (15%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQ------LADLIEEQWITGEKEG 85 L +C +CD + G +++Q +AD + + + Sbjct: 10 PLSLYIHMPWCVRKCPYCDFNSHAVPDGQLS--MDLEQQYLTALVADFETQVEMAQGRLI 67 Query: 86 RYCVLTGGEPLL---QVDVPLIQALNKR-----GFEIAVETN-GTIEPPQGIDWICV 133 + GG P L Q L L R EI +E N GT+E D++ V Sbjct: 68 HSVFIGGGTPSLISAQGYQWLFDQLKARLSFSDDCEITLEANPGTVEHDSFADYLSV 124 >gi|291288343|ref|YP_003505159.1| molybdenum cofactor biosynthesis protein A [Denitrovibrio acetiphilus DSM 12809] gi|290885503|gb|ADD69203.1| molybdenum cofactor biosynthesis protein A [Denitrovibrio acetiphilus DSM 12809] Length = 332 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 10/87 (11%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 DR + +C++C TDF +Q + ++L ++ G K+ R +TGGEPL++ Sbjct: 25 DRCNFRCKYCMPTTDFKCLQHEN--ILSYEELLFAVDVFCSLGVKKVR---VTGGEPLVR 79 Query: 99 VDV-PLIQALNKRGF--EIAVETNGTI 122 + ++ L K E+ + TNG + Sbjct: 80 KGIGSFLEGLGKMEKLEEVTLTTNGAL 106 >gi|90423576|ref|YP_531946.1| molybdenum cofactor biosynthesis protein A [Rhodopseudomonas palustris BisB18] gi|90105590|gb|ABD87627.1| GTP cyclohydrolase subunit MoaA [Rhodopseudomonas palustris BisB18] Length = 344 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ + +++L L G K+ R LTGGEPL+ Sbjct: 33 DRCDLRCVYCMSEDMTFL----PRADLLTLEELDRLCSAFIAKGVKKLR---LTGGEPLV 85 Query: 98 QVD-VPLIQALNKRGF-----EIAVETNGT 121 + + + L+++L++ E+ + TNG+ Sbjct: 86 RRNMMSLVRSLSRHLHTGALDELTLTTNGS 115 >gi|325263088|ref|ZP_08129823.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp. D5] gi|324031481|gb|EGB92761.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp. D5] Length = 321 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 5/61 (8%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK---RGFEIAVET 118 G Y +++L D+++ +G +GG+P++Q + L+ AL + A+ET Sbjct: 112 GTYYTLEELMDVLKRDKDFWGADGG-VTFSGGDPIIQWEF-LLDALKECKKNNIHTAIET 169 Query: 119 N 119 + Sbjct: 170 S 170 >gi|255524292|ref|ZP_05391250.1| Radical SAM domain protein [Clostridium carboxidivorans P7] gi|255511975|gb|EET88257.1| Radical SAM domain protein [Clostridium carboxidivorans P7] Length = 328 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105 C C + +Q LI+E G + + +GGEPL++ D+ LIQ Sbjct: 16 CSHC---YRDSGKKYKEELTTEQGKKLIDEIAKAG---FKMMIFSGGEPLMRKDIFELIQ 69 Query: 106 ALNKRGFEIAVETNGTI 122 + G + +NGT+ Sbjct: 70 YASDLGVIPVLGSNGTL 86 >gi|218441564|ref|YP_002379893.1| radical SAM protein [Cyanothece sp. PCC 7424] gi|218174292|gb|ACK73025.1| Radical SAM domain protein [Cyanothece sp. PCC 7424] Length = 381 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 6/71 (8%) Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104 A C FC +F ++ L I+ I + RY V TGGEP L ++ L Sbjct: 52 ANCNFC--NFAR-DRFPKEQWQFVDLQAGIDSINILFREGVRYLVFTGGEPTL--NLYLT 106 Query: 105 QAL-NKRGFEI 114 + + G I Sbjct: 107 DFVRHASGLGI 117 >gi|114327256|ref|YP_744413.1| molybdenum cofactor biosynthesis protein A [Granulibacter bethesdensis CGDNIH1] gi|114315430|gb|ABI61490.1| molybdenum cofactor biosynthesis protein A [Granulibacter bethesdensis CGDNIH1] Length = 356 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 13/90 (14%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL---- 96 DR +C +C + T + +V L +L + E R LTGGEPL Sbjct: 42 DRCDLRCTYC----MAEDMTFLPKRDVLTLEELDRLCRVFIELGVRKLRLTGGEPLVRRD 97 Query: 97 -LQVDVPLIQALNKRGF----EIAVETNGT 121 +Q+ L Q L RG E+ + TNGT Sbjct: 98 VMQLISRLGQHLEHRGGQGLEELTLTTNGT 127 >gi|302326098|gb|ADL25299.1| radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 332 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 5/81 (6%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ---WITGEKEGRYCVLTGGEPLLQVDVP- 102 C FC +D+ NV ++ + I + + + GGEP+L Sbjct: 50 CSFCYSDWNSRDEAWNTPENVRKVIENIARFHADYFGADAAPWRLSVVGGEPILFPKKAQ 109 Query: 103 -LIQALNKRGFEIAVETNGTI 122 +++ G E+++ TNG+ Sbjct: 110 FMVKTAVACGAEVSIITNGSH 130 >gi|261415943|ref|YP_003249626.1| Radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372399|gb|ACX75144.1| Radical SAM domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 323 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 5/81 (6%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ---WITGEKEGRYCVLTGGEPLLQVDVP- 102 C FC +D+ NV ++ + I + + + GGEP+L Sbjct: 41 CSFCYSDWNSRDEAWNTPENVRKVIENIARFHADYFGADAAPWRLSVVGGEPILFPKKAQ 100 Query: 103 -LIQALNKRGFEIAVETNGTI 122 +++ G E+++ TNG+ Sbjct: 101 FMVKTAVACGAEVSIITNGSH 121 >gi|300777486|ref|ZP_07087344.1| molybdenum cofactor biosynthesis protein A [Chryseobacterium gleum ATCC 35910] gi|300502996|gb|EFK34136.1| molybdenum cofactor biosynthesis protein A [Chryseobacterium gleum ATCC 35910] Length = 299 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121 N ++ ++ + + +TGGEPL++ D +I+ L+ G I + TNG Sbjct: 13 ELMNSQEIFEI--SKIFVQQFNINKIRITGGEPLVRNDFETIIKQLSTLGANIGITTNGV 70 Query: 122 I 122 + Sbjct: 71 L 71 >gi|169627970|ref|YP_001701619.1| molybdenum cofactor biosynthesis protein A [Mycobacterium abscessus ATCC 19977] gi|169239937|emb|CAM60965.1| Putative molybdenum cofactor biosynthesis protein A2 [Mycobacterium abscessus] Length = 330 Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 24/110 (21%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY----CVLTGGEPL 96 DR + +C +C + + L E + G R TGGEPL Sbjct: 21 DRCNLRCTYC------MPAEGLDWLRSETLLTTDEYIRLIGIAVTRLGIDSVRFTGGEPL 74 Query: 97 LQVDVP-LIQALNKRGFE----IAVETNG------TIEP-PQGIDWICVS 134 + D+ L+ A+ G IAV TNG + G+D I VS Sbjct: 75 IFKDLEKLVAAV--AGMSPRPDIAVTTNGVGLDRKAVALREAGLDRINVS 122 >gi|324999155|ref|ZP_08120267.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudonocardia sp. P1] Length = 370 Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 6/80 (7%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R C +C ++ + D +I + G + L+GGEPL++ D+ Sbjct: 17 RCPLHCVYCSNPLALLE--RHDELATDDWLRVIGQAAGLGVVQVH---LSGGEPLVRGDL 71 Query: 102 P-LIQALNKRGFEIAVETNG 120 L+ + G + T+G Sbjct: 72 ETLVAECRRLGLYTNLITSG 91 >gi|289523401|ref|ZP_06440255.1| radical SAM domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503093|gb|EFD24257.1| radical SAM domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 483 Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 8/97 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N R + +C+ C + G T ++ DLI + G ++G Sbjct: 114 NFMVISPTMRCNLKCKGC---YAGSYDT-STDLTAGEIDDLITQAKELGMYFF---TISG 166 Query: 93 GEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGID 129 GEP + D+ I A + + V TNGT+ + D Sbjct: 167 GEPFTRKDLFDIWAKHDDCYF-QVYTNGTLITDEVAD 202 >gi|172037413|ref|YP_001803914.1| hypothetical protein cce_2500 [Cyanothece sp. ATCC 51142] gi|171698867|gb|ACB51848.1| hypothetical protein cce_2500 [Cyanothece sp. ATCC 51142] Length = 338 Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 + GGEPLL + +++ L +R + + TN I + + SP + Sbjct: 72 GAPVVSIPGGEPLLHPQIDEIVKGLVERKKFVYLCTN-AILLEKSLHKFEPSPYFCFSVH 130 Query: 143 IKGGQE 148 + G +E Sbjct: 131 LDGLRE 136 >gi|222053773|ref|YP_002536135.1| radical SAM protein [Geobacter sp. FRC-32] gi|221563062|gb|ACM19034.1| Radical SAM domain protein [Geobacter sp. FRC-32] Length = 355 Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 15/114 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDV-PL 103 +C FC DF+ G R + I+E G K + G GEPLL D + Sbjct: 43 RCIFCAYDFI---GYPNRRLETGRTLTFIDELAEAGLKSLLFA---GEGEPLLHPDCGAM 96 Query: 104 IQALNKRGFEIAVETNGTI-------EPPQGIDWICVSPKAGCDLKIKGGQELK 150 I+ G ++ + TNG + E + ++ S G ++K Sbjct: 97 IRRARSNGIDVGLFTNGQLLTPQLAEEILPHLTFVRFSFNGGTPETYARIHQVK 150 >gi|46395075|gb|AAS91672.1| conserved hypothetical protein [Clostridium beijerinckii] Length = 389 Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C+ C + + +D+ I++ + + Sbjct: 47 CNL-----------KCKHC---YASSDNKRYDDELTLDESKKFIDDLK---DFNVPALLF 89 Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +GGEPL++ + + L+ ++R + TNGT+ Sbjct: 90 SGGEPLMKENILELLDYASQRKIRSTISTNGTL 122 >gi|150016879|ref|YP_001309133.1| radical SAM domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149903344|gb|ABR34177.1| Radical SAM domain protein [Clostridium beijerinckii NCIMB 8052] Length = 389 Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 19/93 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C+ C + + +D+ I++ + + Sbjct: 47 CNL-----------KCKHC---YASSDNKRYDDELTLDESKKFIDDLK---DFNVPALLF 89 Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 +GGEPL++ + + L+ ++R + TNGT+ Sbjct: 90 SGGEPLMKENILELLDYASQRKIRSTISTNGTL 122 >gi|302348385|ref|YP_003816023.1| hypothetical protein ASAC_0585 [Acidilobus saccharovorans 345-15] gi|302328797|gb|ADL18992.1| hypothetical protein ASAC_0585 [Acidilobus saccharovorans 345-15] Length = 339 Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 44/118 (37%), Gaps = 23/118 (19%) Query: 19 HAGRVAV-FCRFSGCNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIE 75 +AG AV F C+ C +C D D G + + D+I Sbjct: 23 YAGLKAVIFI-TGVCD-----------ENCFYCPVDRDRFGRRVMYVNDERAYDINDIIR 70 Query: 76 EQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNK---RGFEIAVETNGTIEPPQGI 128 E G +TGG+PL L + + LI+AL F I + T G P+ + Sbjct: 71 EVERQGATGA---SITGGDPLADLPLTLSLIRALKATFGPEFHIHLYTPGRHSTPEAL 125 >gi|289803429|ref|ZP_06534058.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 182 Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 9 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 68 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + VP ++ L+ GF + + T+G + + D I V Sbjct: 69 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 119 >gi|213580692|ref|ZP_03362518.1| hypothetical protein SentesTyph_05537 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 386 Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 181 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + VP ++ L+ GF + + T+G + + D I V Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232 >gi|213028233|ref|ZP_03342680.1| hypothetical protein Salmonelentericaenterica_40390 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 356 Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 90 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 149 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + VP ++ L+ GF + + T+G + + D I V Sbjct: 150 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 200 >gi|197249479|ref|YP_002147478.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|254807201|sp|B5F1A0|RLMN_SALA4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|197213182|gb|ACH50579.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 388 Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 181 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + VP ++ L+ GF + + T+G + + D I V Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232 >gi|168177427|ref|ZP_02612091.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum NCTC 2916] gi|182670990|gb|EDT82964.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum NCTC 2916] gi|322804366|emb|CBZ01916.1| ribonucleotide reductase of class III (anaerobic), activating protein [Clostridium botulinum H04402 065] Length = 171 Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 20/95 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 R VF SGC Q++ FC G + ++ + IE Sbjct: 23 RSVVFV--SGCKHNCKECQNKEMQ--SFC----------YGDKISLKDILKRIESNVPL- 67 Query: 82 EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114 R +GGEPL L + + G I Sbjct: 68 ---IRGVTFSGGEPLEHIKELSSLAEEIKSLGLNI 99 >gi|161502321|ref|YP_001569433.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|205829874|sp|A9MHL3|RLMN_SALAR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|160863668|gb|ABX20291.1| hypothetical protein SARI_00353 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 388 Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 181 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + VP ++ L+ GF + + T+G + + D I V Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232 >gi|16761440|ref|NP_457057.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140863|ref|NP_804205.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412596|ref|YP_149671.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181092|ref|YP_217509.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161612716|ref|YP_001586681.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549454|ref|ZP_02343213.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168232093|ref|ZP_02657151.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238262|ref|ZP_02663320.1| radical SAM enzyme, Cfr family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243305|ref|ZP_02668237.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261436|ref|ZP_02683409.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466724|ref|ZP_02700578.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821500|ref|ZP_02833500.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444721|ref|YP_002041783.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448097|ref|YP_002046583.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469426|ref|ZP_03075410.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194738017|ref|YP_002115587.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197361531|ref|YP_002141167.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245006|ref|YP_002216589.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388216|ref|ZP_03214828.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929473|ref|ZP_03220547.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353624|ref|YP_002227425.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857933|ref|YP_002244584.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213161946|ref|ZP_03347656.1| hypothetical protein Salmoneentericaenterica_18887 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425329|ref|ZP_03358079.1| hypothetical protein SentesTyphi_06363 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213649661|ref|ZP_03379714.1| hypothetical protein SentesTy_21620 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213857325|ref|ZP_03384296.1| hypothetical protein SentesT_19305 [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224582938|ref|YP_002636736.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|289825424|ref|ZP_06544661.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|75481689|sp|Q57LI4|RLMN_SALCH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81362045|sp|Q5PNI4|RLMN_SALPA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81628152|sp|Q8Z4P2|RLMN_SALTI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829875|sp|A9N1Z8|RLMN_SALPB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807202|sp|B5FR66|RLMN_SALDC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807203|sp|B5R584|RLMN_SALEP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807204|sp|B5RCZ4|RLMN_SALG2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807205|sp|B4TD95|RLMN_SALHS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807206|sp|B4T0Q1|RLMN_SALNS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807207|sp|C0PYM8|RLMN_SALPC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807208|sp|B5BAY3|RLMN_SALPK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807209|sp|B4TR97|RLMN_SALSV RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|25320182|pir||AD0822 conserved hypothetical protein STY2770 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503740|emb|CAD02728.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29136488|gb|AAO68054.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56126853|gb|AAV76359.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128725|gb|AAX66428.1| putative Fe-S-cluster redox enzyme [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362080|gb|ABX65848.1| hypothetical protein SPAB_00414 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403384|gb|ACF63606.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406401|gb|ACF66620.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455790|gb|EDX44629.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713519|gb|ACF92740.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630780|gb|EDX49372.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093007|emb|CAR58440.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197288805|gb|EDY28178.1| radical SAM enzyme, Cfr family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939522|gb|ACH76855.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605314|gb|EDZ03859.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321192|gb|EDZ06392.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273405|emb|CAR38380.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325472|gb|EDZ13311.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205333531|gb|EDZ20295.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337567|gb|EDZ24331.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342014|gb|EDZ28778.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349318|gb|EDZ35949.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709736|emb|CAR34088.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467465|gb|ACN45295.1| hypothetical protein SPC_1129 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320087020|emb|CBY96789.1| Ribosomal RNA large subunit methyltransferase N 23S rRNA m2A2503 methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322613730|gb|EFY10669.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619527|gb|EFY16403.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625032|gb|EFY21861.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629525|gb|EFY26301.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634044|gb|EFY30781.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635518|gb|EFY32229.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639806|gb|EFY36485.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644428|gb|EFY40969.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648573|gb|EFY45022.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655207|gb|EFY51516.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658254|gb|EFY54520.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664255|gb|EFY60452.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669422|gb|EFY65571.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673149|gb|EFY69255.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676541|gb|EFY72609.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683291|gb|EFY79305.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685823|gb|EFY81816.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715579|gb|EFZ07150.1| Ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323194766|gb|EFZ79954.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199546|gb|EFZ84637.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204679|gb|EFZ89677.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208127|gb|EFZ93072.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210149|gb|EFZ95050.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217017|gb|EGA01739.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221815|gb|EGA06219.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225006|gb|EGA09261.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229295|gb|EGA13419.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235390|gb|EGA19474.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237424|gb|EGA21487.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245178|gb|EGA29179.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248881|gb|EGA32807.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253168|gb|EGA37000.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255402|gb|EGA39170.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262039|gb|EGA45604.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266350|gb|EGA49838.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269819|gb|EGA53269.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624345|gb|EGE30690.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628724|gb|EGE35067.1| Ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 388 Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 181 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + VP ++ L+ GF + + T+G + + D I V Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232 >gi|326391532|ref|ZP_08213064.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325992413|gb|EGD50873.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 354 Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 17/103 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C + + + + + +E G +++ Sbjct: 54 CNL-----------KCVHCYNNSSSNPKSYNEELSEELWLKIAKELKAMGVF---TVIIS 99 Query: 92 GGEPLLQVDVP---LIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GGEPLL+ + L + I + TNG ID++ Sbjct: 100 GGEPLLKRSLVEKILTVFAENKNIAIGIITNGWFVDDSFIDFL 142 >gi|300113205|ref|YP_003759780.1| coenzyme PQQ biosynthesis protein E [Nitrosococcus watsonii C-113] gi|299539142|gb|ADJ27459.1| coenzyme PQQ biosynthesis protein E [Nitrosococcus watsonii C-113] Length = 387 Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 9/95 (9%) Query: 28 RFSGCNLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R LW QC +C + + + + E G + Sbjct: 18 RTQ--PLWLLAGLTYACPLQCPYCSNPLDFAKHKY--ELSTEDWLRVFHEARAMGAAQLG 73 Query: 87 YCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 + +GGEPL + D+ LI K G+ + T+G Sbjct: 74 F---SGGEPLARRDLEVLITEARKLGYYTNLITSG 105 >gi|296331307|ref|ZP_06873779.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676293|ref|YP_003867965.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis subsp. spizizenii str. W23] gi|296151422|gb|EFG92299.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414537|gb|ADM39656.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis subsp. spizizenii str. W23] Length = 341 Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 10/55 (18%) Query: 90 LTGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEP-------PQGIDWICVS 134 LTGGEPL++ D+P LI+ L + G IA+ TNG++ P G+ + +S Sbjct: 76 LTGGEPLMRKDMPELIKKLARIPGVRDIAMTTNGSLLPVYAERLKEAGLKRVTIS 130 >gi|295103385|emb|CBL00929.1| GTP cyclohydrolase subunit MoaA [Faecalibacterium prausnitzii SL3/3] Length = 325 Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 25/113 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR+C + K R V + + + + +T Sbjct: 20 CNL-----------RCRYC----MPDGVEKLEREAVLTYEEFLRLAALFAQCGIDTVRVT 64 Query: 92 GGEPLLQVDVP-LIQALNK-RGF-EIAVETNGTIEPPQ-------GIDWICVS 134 GGEPL++ +V L+ L G + + TN + Q G+D + +S Sbjct: 65 GGEPLVRKNVAQLVAGLKATPGIRRVTLTTNAVLLAEQLPALLDAGLDSVNIS 117 >gi|254167788|ref|ZP_04874638.1| radical SAM domain protein [Aciduliprofundum boonei T469] gi|197623316|gb|EDY35881.1| radical SAM domain protein [Aciduliprofundum boonei T469] Length = 388 Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 38/188 (20%) Query: 29 FSG-CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 +G CNL CR+C G+ ++ IE+ EK+ Sbjct: 39 LTGVCNL-----------NCRYC-------GGSIPEEVMPHEIQYSIEDLKNFVEKDKDA 80 Query: 88 CV-LTGGEPLL--QVDVPLIQALNKRGFEIAVETNG--TIEPPQG----IDWICVS---- 134 + GGEPLL + ++ + + F + TNG + P+ ID I VS Sbjct: 81 IIAFYGGEPLLRIEKMKEIMDNIRAKRFVVQ--TNGIFLHKIPEEYLNRIDAILVSIDGV 138 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 P+ + G E+ V +V E Y G R ++ + + L++ + Sbjct: 139 PEVTNYYRGNGVYEI--VVDRVRKIREKYKGDLIARMAVSEESDIYRDVTHLLSLPF--D 194 Query: 195 NPKWRLSV 202 + W+L+V Sbjct: 195 HVHWQLNV 202 >gi|53802993|ref|YP_115280.1| hypothetical protein MCA2887 [Methylococcus capsulatus str. Bath] gi|81680833|sp|Q603C0|RLMN_METCA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|53756754|gb|AAU91045.1| conserved hypothetical protein TIGR00048 [Methylococcus capsulatus str. Bath] Length = 366 Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL-IEEQWITGEKEGRYCVLT 91 N Q S +C FC T QG + + L + + + E+ VL Sbjct: 112 NTLCVSSQVGCSLECSFCSTAR---QGFNRNLTTAEIIGQLWVAQHRLDEEQRISNVVLM 168 Query: 92 G-GEPLL 97 G GEPLL Sbjct: 169 GMGEPLL 175 >gi|20093717|ref|NP_613564.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19] gi|19886608|gb|AAM01494.1| Predicted Fe-S oxidoreductase [Methanopyrus kandleri AV19] Length = 243 Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 23/98 (23%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL C +C ++ R+ + D++E G R + Sbjct: 50 GCNL-----------DCAYCYVNYPRRHPW-DRRWKFHRPIDVVERLKNMGGDVVR---V 94 Query: 91 TGGEPLLQVD--VPLIQA----LNKRGFEIAVETNGTI 122 +G EP L + + LI+ L R F +ETNGTI Sbjct: 95 SGCEPTLCKEHILELIELCGRELPDRKFV--LETNGTI 130 >gi|16765845|ref|NP_461460.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167991834|ref|ZP_02572933.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197263041|ref|ZP_03163115.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|81594911|sp|Q8ZN52|RLMN_SALTY RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|16421069|gb|AAL21419.1| putative Fe-S-cluster redox enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197241296|gb|EDY23916.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205329931|gb|EDZ16695.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261247721|emb|CBG25549.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994643|gb|ACY89528.1| hypothetical protein STM14_3097 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159074|emb|CBW18588.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913512|dbj|BAJ37486.1| 23S rRNA methyltransferase N [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222774|gb|EFX47845.1| Ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130853|gb|ADX18283.1| radical SAM superfamily protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 388 Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 181 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + VP ++ L+ GF + + T+G + + D I V Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232 >gi|329119798|ref|ZP_08248472.1| molybdenum cofactor biosynthesis protein A [Neisseria bacilliformis ATCC BAA-1200] gi|327463954|gb|EGF10265.1| molybdenum cofactor biosynthesis protein A [Neisseria bacilliformis ATCC BAA-1200] Length = 364 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 64/173 (36%), Gaps = 28/173 (16%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D + +C +C K + ++ L+ +G ++ R +TGGEP L+ D Sbjct: 60 DLCNYRCTYC-LPDGYQGKAKPDELTLPEIQTLVTAFAASGTRKIR---VTGGEPTLRRD 115 Query: 101 VP-LIQALNKRGFEIAVE-----TN----GTIEP---PQGIDWICVS-PKAGCDL--KIK 144 + +I A +E TN G I P G+D + VS D KI Sbjct: 116 LADIIAACKAAP---QIENVALTTNAYRLGKIFPACRAAGLDKLNVSIDSFNPDTFQKIT 172 Query: 145 GGQELKLVFPQVN-VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196 G E + + + + + G L+ G L + A++Y P Sbjct: 173 GKNECQNILRDLETILDSGFYGIKINTLLLRQYAGQTLPD----ALAYIKTRP 221 >gi|261820570|ref|YP_003258676.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium wasabiae WPP163] gi|261604583|gb|ACX87069.1| radical SAM enzyme, Cfr family [Pectobacterium wasabiae WPP163] Length = 400 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I +TG++ V+ G Sbjct: 134 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRPITNVVMMG 193 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + VP ++ L+ GF + + T+G + + D I V Sbjct: 194 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 244 >gi|253689386|ref|YP_003018576.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755964|gb|ACT14040.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 419 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I +TG++ V+ G Sbjct: 153 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRPITNVVMMG 212 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + VP ++ L+ GF + + T+G + + D I V Sbjct: 213 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 263 >gi|256830160|ref|YP_003158888.1| Radical SAM domain protein [Desulfomicrobium baculatum DSM 4028] gi|256579336|gb|ACU90472.1| Radical SAM domain protein [Desulfomicrobium baculatum DSM 4028] Length = 399 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 13/108 (12%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 G A C L + + C+ C G + + LI+ Sbjct: 48 GTPA-------CKLIAWEVTRSCNLACKHC--RAEAHLEPYEGELDTAEAKALIDTFPQV 98 Query: 81 GEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127 G + TGG+P+++ DV LI+ +G + NGT+ P Sbjct: 99 G---NPIIIFTGGDPMMRADVYELIRYATDKGLRCVMSPNGTLITPDT 143 >gi|227328680|ref|ZP_03832704.1| hypothetical protein PcarcW_15616 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 418 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I +TG++ V+ G Sbjct: 152 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRPITNVVMMG 211 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + VP ++ L+ GF + + T+G + + D I V Sbjct: 212 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 262 >gi|227112689|ref|ZP_03826345.1| hypothetical protein PcarbP_06994 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 418 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I +TG++ V+ G Sbjct: 152 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRPITNVVMMG 211 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + VP ++ L+ GF + + T+G + + D I V Sbjct: 212 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 262 >gi|213621172|ref|ZP_03373955.1| hypothetical protein SentesTyp_28162 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 315 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 72 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 131 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + VP ++ L+ GF + + T+G + + D I V Sbjct: 132 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 182 >gi|126700364|ref|YP_001089261.1| putative radical SAM family protein [Clostridium difficile 630] gi|115251801|emb|CAJ69636.1| putative radical SAM-family protein [Clostridium difficile] Length = 459 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 29/113 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWI-TGEKEGRYC 88 CNL +C++C F G + + + I+ +G ++ Sbjct: 104 CNL-----------KCKYC---FAAQGDFGGEKELMSFEVGKAAIDYLIANSGSRKNLEI 149 Query: 89 VLTGGEPLLQVDVPLIQALNKRGFEIA----------VETNGTIEPPQGIDWI 131 GGEPL+ + +++ L G + + TNG + + ID+I Sbjct: 150 DFFGGEPLM--NFEVVKQLVDYGRSVEKDYNKNIRFTITTNGVLLNDEIIDYI 200 >gi|254976344|ref|ZP_05272816.1| putative radical SAM family protein [Clostridium difficile QCD-66c26] gi|255093729|ref|ZP_05323207.1| putative radical SAM family protein [Clostridium difficile CIP 107932] gi|255101920|ref|ZP_05330897.1| putative radical SAM family protein [Clostridium difficile QCD-63q42] gi|255307789|ref|ZP_05351960.1| putative radical SAM family protein [Clostridium difficile ATCC 43255] gi|255315481|ref|ZP_05357064.1| putative radical SAM family protein [Clostridium difficile QCD-76w55] gi|255518144|ref|ZP_05385820.1| putative radical SAM family protein [Clostridium difficile QCD-97b34] gi|255651260|ref|ZP_05398162.1| putative radical SAM family protein [Clostridium difficile QCD-37x79] gi|260684324|ref|YP_003215609.1| putative radical SAM family protein [Clostridium difficile CD196] gi|260687983|ref|YP_003219117.1| putative radical SAM family protein [Clostridium difficile R20291] gi|306521102|ref|ZP_07407449.1| putative radical SAM family protein [Clostridium difficile QCD-32g58] gi|260210487|emb|CBA64969.1| putative radical SAM family protein [Clostridium difficile CD196] gi|260214000|emb|CBE06119.1| putative radical SAM family protein [Clostridium difficile R20291] Length = 459 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 29/113 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWI-TGEKEGRYC 88 CNL +C++C F G + + + I+ +G ++ Sbjct: 104 CNL-----------KCKYC---FAAQGDFGGEKELMSFEVGKAAIDYLIANSGSRKNLEI 149 Query: 89 VLTGGEPLLQVDVPLIQALNKRGFEIA----------VETNGTIEPPQGIDWI 131 GGEPL+ + +++ L G + + TNG + + ID+I Sbjct: 150 DFFGGEPLM--NFEVVKQLVDYGRSVEKDYNKNIRFTITTNGVLLNDEIIDYI 200 >gi|30913216|sp|Q9NZB8|MOCS1_HUMAN RecName: Full=Molybdenum cofactor biosynthesis protein 1; AltName: Full=Cell migration-inducing gene 11 protein; AltName: Full=Molybdenum cofactor synthesis-step 1 protein A-B; Includes: RecName: Full=Molybdenum cofactor biosynthesis protein A; Includes: RecName: Full=Molybdenum cofactor biosynthesis protein C Length = 636 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + K +++ L G + R LT Sbjct: 80 CNL-----------RCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGIDKIR---LT 125 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GGEPL++ D V ++ L + G I V TNG Sbjct: 126 GGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNG 157 >gi|50122145|ref|YP_051312.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium atrosepticum SCRI1043] gi|81644326|sp|Q6D273|RLMN_ERWCT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|49612671|emb|CAG76121.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 398 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I +TG++ V+ G Sbjct: 132 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRPITNVVMMG 191 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + VP ++ L+ GF + + T+G + + D I V Sbjct: 192 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 242 >gi|23014062|ref|ZP_00053900.1| COG1509: Lysine 2,3-aminomutase [Magnetospirillum magnetotacticum MS-1] Length = 343 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 4/71 (5%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 CRFC G ++ + ++ + R +LTGG+PL+ L Sbjct: 108 CRFC--FRRARVGDGEATMTEAEIEAALA--YVACRPDIREVILTGGDPLMLPAPRLGAL 163 Query: 107 LNKRGFEIAVE 117 L++ G VE Sbjct: 164 LDRIGAIGHVE 174 >gi|307634938|gb|ADN78354.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase, putative [Geobacter sulfurreducens KN400] Length = 322 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 11/86 (12%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 R +A+C C+T F + +Q ++ E ++ +TGGEP Sbjct: 4 CIIVTYRCNAKCHMCNTWF----------HPTEQDKEISPEVIAKLPSGLKFINITGGEP 53 Query: 96 LLQVDVP-LIQALNKRGFEIAVETNG 120 L+ D+ +I+ + + + TNG Sbjct: 54 FLRKDLAQIIEVALNKTERLVISTNG 79 >gi|296185249|ref|ZP_06853659.1| radical SAM domain protein [Clostridium carboxidivorans P7] gi|296050083|gb|EFG89507.1| radical SAM domain protein [Clostridium carboxidivorans P7] Length = 328 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105 C C + +Q LI+E G + + +GGEPL++ D+ LIQ Sbjct: 16 CSHC---YRDSGKKYKEELTTEQGKKLIDEIAKAG---FKMMIFSGGEPLMRKDIFELIQ 69 Query: 106 ALNKRGFEIAVETNGTI 122 + G + +NGT+ Sbjct: 70 YASDLGVIPVLGSNGTL 86 >gi|297560374|ref|YP_003679348.1| molybdenum cofactor biosynthesis protein A [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844822|gb|ADH66842.1| molybdenum cofactor biosynthesis protein A [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 335 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 14/105 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C K D+L LI TGGEPLL+ Sbjct: 19 DRCNLRCTYCMPPEGLEWLPKPELLTDDELLRLIR--IGVTRLGITEVRFTGGEPLLRRG 76 Query: 101 VP-LIQ---ALNKRGFEIAVETNG---TIEPP----QGIDWICVS 134 +P L+ AL R A+ TNG P G+D + VS Sbjct: 77 LPGLVAGTTALEPRPHT-ALTTNGIGLARMAPALAEAGLDRVNVS 120 >gi|262196198|ref|YP_003267407.1| radical SAM protein [Haliangium ochraceum DSM 14365] gi|262079545|gb|ACY15514.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365] Length = 431 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 29/116 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY--------NVDQLADLIEEQWITGEK 83 CNL C +C + + + V ++A + + Sbjct: 22 CNL-----------ACPYC--YYFFQENDLAEKSASALIPESTVREVAAFLRAGAEALDI 68 Query: 84 EGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIA-----VETNGTIEPPQGIDWI 131 Y L GGEPLL L L + ++A ++TNGT+ + ID Sbjct: 69 GHLYIGLHGGEPLLLPKKRFDALCTILREELGDVAQVHLGLQTNGTLVDDEWIDLF 124 >gi|226947318|ref|YP_002802409.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum A2 str. Kyoto] gi|226841206|gb|ACO83872.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum A2 str. Kyoto] Length = 171 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 20/95 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 R VF SGC Q++ FC G + ++ + IE Sbjct: 23 RSVVFV--SGCKHNCKECQNKEMQ--SFC----------YGDKISLKDILKRIESNVPL- 67 Query: 82 EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114 R +GGEPL L + + G I Sbjct: 68 ---IRGVTFSGGEPLEHIKELSSLAEEIKSLGLNI 99 >gi|110835223|ref|YP_694082.1| molybdenum cofactor biosynthesis protein A [Alcanivorax borkumensis SK2] gi|110648334|emb|CAL17810.1| molybdenum cofactor biosynthesis protein A [Alcanivorax borkumensis SK2] Length = 337 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 23/102 (22%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R S DR +C +C + T R V L ++ + + Sbjct: 23 VRLS--------VTDRCDFRCVYC----MAEDMTFVPRDQVLTLEEMSRLARVLVRLGVK 70 Query: 87 YCVLTGGEPLLQVDVPL-------IQALNKRGFEIAVETNGT 121 LTGGEPL++ DV I+ L + TNG Sbjct: 71 RIRLTGGEPLVRRDVAHLVRDIGAIEGLRELNMT----TNGA 108 >gi|29832997|ref|NP_827631.1| molybdenum cofactor biosynthesis protein A [Streptomyces avermitilis MA-4680] gi|29610118|dbj|BAC74166.1| putative molybdenum cofactor biosynthesis protein A [Streptomyces avermitilis MA-4680] Length = 343 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 50/139 (35%), Gaps = 33/139 (23%) Query: 15 GEGGHA-----GRVAVFCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66 GEG GRVA R S CNL +C +C + K Sbjct: 10 GEGARVLIDTYGRVATDLRVSLTDRCNL-----------RCTYCMPEEGLQWLAKPDLLT 58 Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV----PLIQALNKRGFEIAVETNG-- 120 D++ LI+ TGGEPLL+ + + AL R + ++ TNG Sbjct: 59 DDEIVRLID--IAVTRLGITEVRFTGGEPLLRPGLVGIVERVAALASRP-QTSLTTNGIG 115 Query: 121 -----TIEPPQGIDWICVS 134 T G+D + VS Sbjct: 116 LSRTATALKAAGLDRVNVS 134 >gi|15920304|ref|NP_375973.1| coenzyme PQQ synthesis protein [Sulfolobus tokodaii str. 7] gi|15621086|dbj|BAB65082.1| 347aa long hypothetical coenzyme PQQ synthesis protein [Sulfolobus tokodaii str. 7] Length = 347 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 6/85 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 +L C+ C I G ++ L+EE + V TG Sbjct: 8 HLVFWEVTKACPLTCKHC--RANAIDKPLPGELTTEEGKKLLEE---ISQFGKVVVVFTG 62 Query: 93 GEPLLQVDV-PLIQALNKRGFEIAV 116 G+PL + D+ L+ G +++ Sbjct: 63 GDPLSRDDIFELMDYAKSLGLIVSI 87 >gi|86144334|ref|ZP_01062666.1| pyruvate formate lyase activating enzyme [Vibrio sp. MED222] gi|85837233|gb|EAQ55345.1| pyruvate formate lyase activating enzyme [Vibrio sp. MED222] Length = 235 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 14/113 (12%) Query: 30 SGCN-----LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 SGC L G + C CD + ++D++ E + Sbjct: 2 SGCPSSALSLIEG-KVKWDPLACTNCDQCVDICDHKSSPKITTMTVSDVL-ELVRHNQFF 59 Query: 85 GRYCVLTGGEPLLQV--DVPLIQALNK----RGFEIAVETNGTIEPPQGIDWI 131 ++GGE +Q+ V L QA+ +++NG++ QG D + Sbjct: 60 LSGITVSGGEATMQLPFIVELFQAIKSDPQLAHLTCFIDSNGSLTQ-QGWDKV 111 >gi|301166467|emb|CBW26043.1| molybdenum cofactor biosynthesis protein A [Bacteriovorax marinus SJ] Length = 328 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 10/60 (16%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 D+ + +C +C + + T +VD+ A ++E+ G +E R +TGGEPLL Sbjct: 36 DKCNLRCHYC----MPLDATFMDEQRYLSVDEYAQVVEDLCKFGLEEVR---ITGGEPLL 88 >gi|296242351|ref|YP_003649838.1| radical SAM domain-containing protein [Thermosphaera aggregans DSM 11486] gi|296094935|gb|ADG90886.1| Radical SAM domain protein [Thermosphaera aggregans DSM 11486] Length = 306 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 16/136 (11%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R + C FC T R V D +++ + Y +TGGEPLL+ D Sbjct: 20 RCNYNCIFC----HREGLTGLDRAEVLTPDDYRYLAYVSRKLGIVYFKITGGEPLLRRDT 75 Query: 102 P-LIQALNKRGFEIAVETNG-------TIEPPQGIDWICVSPKAGCDLK----IKGGQEL 149 P +I+ + + E+++ TNG G+D + VS + D + + Sbjct: 76 PDIIKGVREYSKEVSLTTNGYFLKNLAGKLADAGLDRLNVSVHSLNDEVYQAITRTRGSV 135 Query: 150 KLVFPQVNVSPENYIG 165 KL+ + + E+ I Sbjct: 136 KLILEGIEQALEHGIK 151 >gi|24374870|ref|NP_718913.1| oxygen-independent coproporphyrinogen III oxidase, putative [Shewanella oneidensis MR-1] gi|24349568|gb|AAN56357.1|AE015773_2 oxygen-independent coproporphyrinogen III oxidase, putative [Shewanella oneidensis MR-1] Length = 385 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 10/101 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91 L +C +CD + G G + VD L + + + + + + Sbjct: 13 PLSLYIHIPWCVQKCPYCDFNSHGQNGELPQQAYVDALLADLRQDLHLVQGRKLHTIFIG 72 Query: 92 GGEPLLQVDVPLIQALNKR--------GFEIAVETN-GTIE 123 GG P L + + L+ G EI +E N GT+E Sbjct: 73 GGTPSLFDANQIKRILDDANALIPFSDGIEITMEANPGTLE 113 >gi|330836992|ref|YP_004411633.1| aspartate carbamoyltransferase [Spirochaeta coccoides DSM 17374] gi|329748895|gb|AEC02251.1| aspartate carbamoyltransferase [Spirochaeta coccoides DSM 17374] Length = 538 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 11/48 (22%) Query: 16 EGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63 E H G A+F R + +C +CDT + KG Sbjct: 493 ESLHEGVPAMFRRTA-----------DDKFECAWCDTVHGFKEIWKGA 529 >gi|323700676|ref|ZP_08112588.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfovibrio sp. ND132] gi|323460608|gb|EGB16473.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Desulfovibrio desulfuricans ND132] Length = 227 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 18/97 (18%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 +F GCNL +C C V A + Sbjct: 30 IF--LGGCNL-----------RCPTC---HNFQLAWDMHSLPVID-AQRVRAYLRDRAGW 72 Query: 85 GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 ++GGEP V L + K G + +++NG Sbjct: 73 LDGVTISGGEPTTVPGVGELAFEIRKTGLPVKMDSNG 109 >gi|308233580|ref|ZP_07664317.1| radical SAM domain protein [Atopobium vaginae DSM 15829] Length = 332 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 26/110 (23%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 A+F F+GC L +C FC +F Q G + +LA+++ E G Sbjct: 66 AIF--FTGCPL-----------RCAFC-QNFKISQEGFGLKITTARLAEIMLELQAQGAL 111 Query: 84 EGRYCVLTGGEPLL---QVDVPLIQALNKRGFEIAV--ETNGTIEPPQGI 128 PL V L A G ++ + T+G E P+ I Sbjct: 112 NINLVT-----PLHYAPHVREALFMA-KDAGLQLPIVCNTSG-YERPETI 154 >gi|291522320|emb|CBK80613.1| GTP cyclohydrolase subunit MoaA [Coprococcus catus GD/7] Length = 322 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 20/104 (19%) Query: 27 CRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 R S CNL C +++ L I Sbjct: 12 IRLSVTDRCNLRCRYCMPPDGISCL-----------PMREILTYEEIEHL---CRIFAAL 57 Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNK-RGF-EIAVETNGTIEP 124 +TGGEP ++ ++ LI+ + + G + + TNGT+ Sbjct: 58 GIHKVKITGGEPFVRKNICHLIRRIKQIPGIDSVTLTTNGTLAL 101 >gi|257387266|ref|YP_003177039.1| Wyosine base formation domain protein [Halomicrobium mukohataei DSM 12286] gi|257169573|gb|ACV47332.1| Wyosine base formation domain protein [Halomicrobium mukohataei DSM 12286] Length = 325 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 21/107 (19%) Query: 38 REQDRLSAQCRFCDTDFVGIQGTKGG--RYNVDQLADL-----------------IEEQW 78 + + +C FC D G G + +AD + + Sbjct: 56 TPVVKCNERCVFCWRDHAGHAYELGDVQWDDPSAVADASLELQKRLLSGFGGNEKVPRER 115 Query: 79 ITGEKEGRYCVLT-GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 E R+ ++ GEP L +P LI+ + R + +NGT Sbjct: 116 FEEAMEPRHVAISLDGEPSLYPYLPELIEEFHDRDITTFLVSNGTNP 162 >gi|160902963|ref|YP_001568544.1| radical SAM domain-containing protein [Petrotoga mobilis SJ95] gi|160360607|gb|ABX32221.1| Radical SAM domain protein [Petrotoga mobilis SJ95] Length = 351 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 26/122 (21%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIE-----EQWITGEKEGRY 87 L+S + + +C +C ++G + G + +++ D I E+ E++ Sbjct: 2 LFSIWLTNNCNLKCSYC---YIGEKNGEEMKDETKEKIVDFISLKSEIEKRKKSERKHIN 58 Query: 88 CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETNGTIEPPQGIDW-------IC 132 V GGEPLL LI + TNGT+ + I++ + Sbjct: 59 IVYFGGEPLL--RFDLITFFTKEIKKKIKGIPIFFHMTTNGTLLTKEIINYFKENQLPVT 116 Query: 133 VS 134 +S Sbjct: 117 LS 118 >gi|114607312|ref|XP_527381.2| PREDICTED: molybdenum cofactor synthesis-step 1 protein isoform 5 [Pan troglodytes] Length = 638 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + K +++ L G + R LT Sbjct: 80 CNL-----------RCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGVDKIR---LT 125 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GGEPL++ D V ++ L + G I V TNG Sbjct: 126 GGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNG 157 >gi|300898269|ref|ZP_07116620.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 198-1] gi|300358058|gb|EFJ73928.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 198-1] Length = 352 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 45 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 100 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 101 RDFTDIIAAVRENDAIRQIAVTTNG 125 >gi|293607181|ref|ZP_06689523.1| molybdenum cofactor biosynthesis protein A [Achromobacter piechaudii ATCC 43553] gi|292814515|gb|EFF73654.1| molybdenum cofactor biosynthesis protein A [Achromobacter piechaudii ATCC 43553] Length = 371 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 25/114 (21%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D + + + + ++++ L G ++ R LTGGE Sbjct: 47 DRCNFRCTYCMPREVFDASYTFMPHS--ALLSFEEISRLAGIFTQLGVEKIR---LTGGE 101 Query: 95 PLLQVDVP-LIQALNK------RGFEIAVETNGTI-------EPPQGIDWICVS 134 PLL+ + L+ L + ++ + TNG++ G+ + VS Sbjct: 102 PLLRKHIENLVGQLAALRTPAGQALDLTLTTNGSVLARKAAALKAAGLSRVTVS 155 >gi|227822257|ref|YP_002826228.1| molybdenum cofactor biosynthesis protein A [Sinorhizobium fredii NGR234] gi|227341257|gb|ACP25475.1| molybdenum cofactor biosynthesis protein A [Sinorhizobium fredii NGR234] Length = 368 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 20/149 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C K +++L L G ++ R LTGGEPL++ + Sbjct: 57 DRCDFRCTYC-MAEHMTFLPKKDLLTLEELQRLCSAFIAKGVRKLR---LTGGEPLVRKN 112 Query: 101 VP-LIQAL---NKRGF--EIAVETNGTI-------EPPQGIDWICVSPKAGCDLK---IK 144 + L++ L + G E+ + TNG+ G+ I VS K I Sbjct: 113 IMFLVRELGKEIEAGRLDELTLTTNGSQLSKFAAELADCGVRRINVSLDTLDPDKFREIT 172 Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSL 173 EL V ++ + + +L Sbjct: 173 RWGELTKVIEGIDAAQAAGLKVKINAVAL 201 >gi|218676233|ref|YP_002395052.1| Pyruvate formate-lyase activating enzyme [Vibrio splendidus LGP32] gi|218324501|emb|CAV25965.1| Pyruvate formate-lyase activating enzyme [Vibrio splendidus LGP32] Length = 295 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 14/113 (12%) Query: 30 SGCN-----LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 SGC L G + C CD + ++D++ E + Sbjct: 62 SGCPSSALSLIEG-KVKWDPLACTNCDQCVDICDHKSSPKITTMTVSDVL-ELVRHNQFF 119 Query: 85 GRYCVLTGGEPLLQV--DVPLIQALNK----RGFEIAVETNGTIEPPQGIDWI 131 ++GGE +Q+ V L QA+ +++NG++ QG D + Sbjct: 120 LSGITVSGGEATMQLPFIVELFQAIKSDPQLAHLTCFIDSNGSLTQ-QGWDKV 171 >gi|114607314|ref|XP_001173942.1| PREDICTED: molybdenum cofactor synthesis-step 1 protein isoform 3 [Pan troglodytes] Length = 620 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + K +++ L G + R LT Sbjct: 80 CNL-----------RCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGVDKIR---LT 125 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GGEPL++ D V ++ L + G I V TNG Sbjct: 126 GGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNG 157 >gi|34419250|ref|NP_899263.1| anaerobic NTP reductase small subunit [Vibrio phage KVP40] gi|34332931|gb|AAQ64086.1| anaerobic NTP reductase small subunit [Vibrio phage KVP40] Length = 158 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 23/110 (20%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 MK I E F GEG R+++F SGC +C C + Sbjct: 1 MKYQKINE-FDFANGEGV---RLSIFV--SGC-----------EHRCAGCY-NESTWDPN 42 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110 G + + L D++ LTGG+PL + I + K Sbjct: 43 DGIDFTEETLRDVLTSLEQHDG-----LSLTGGDPLYPGNREAILRICKA 87 >gi|78355787|ref|YP_387236.1| Fe-S oxidoreductase-like [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218192|gb|ABB37541.1| Fe-S oxidoreductases-like protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 379 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 13/91 (14%) Query: 32 CN--LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 C LW+ + S C +C F V L D + + Sbjct: 5 CPQILWNMTRKCNFS--CHYC--YFPHDNSPVSDSLPVAALLDFLRSRG-----GEWLVG 55 Query: 90 LTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 LTGGEP + V + A+ I ++TN Sbjct: 56 LTGGEPFIYPYFVDICSAIAAE-HRIGIDTN 85 >gi|260773725|ref|ZP_05882640.1| hypothetical pyruvate formate lyase activating enzyme [Vibrio metschnikovii CIP 69.14] gi|260610686|gb|EEX35890.1| hypothetical pyruvate formate lyase activating enzyme [Vibrio metschnikovii CIP 69.14] Length = 269 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 59/175 (33%), Gaps = 35/175 (20%) Query: 25 VFCRFSGCNLWSGREQDRLS-AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 VF GCN + + A+C D+ + D +E+ W Sbjct: 39 VFF-LQGCNYRCPACHNPQTIARCSE-DSQ-------------AMTVFDAVEQIWQRRHF 83 Query: 84 EGRYCVLTGGEPLLQVDVPLIQALNKR--------GFEIAVETNGTIEPPQGIDWICVSP 135 L+GGE LQ + ++ L K +++NG++ W + P Sbjct: 84 ITG-ITLSGGEASLQ--IEFVRELFKAVKTIPELSSLTCLLDSNGSLSLKH---WQSLLP 137 Query: 136 -KAGCDLKIKGGQELKLVFP---QVNVSPENYIGFDFERFSLQPMDGPFLEENTN 186 G + +K E + + NV + + F E L + + E T+ Sbjct: 138 WMDGAMIDLKAWHE-RCHYQLTGHSNVPVKRSLHFLAEHGKLSEVRLLLIPEKTD 191 >gi|303277293|ref|XP_003057940.1| molybdopterin synthase CNX2 [Micromonas pusilla CCMP1545] gi|226460597|gb|EEH57891.1| molybdopterin synthase CNX2 [Micromonas pusilla CCMP1545] Length = 444 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 21/95 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C +C G++ + +++ L G + R L Sbjct: 136 CNL-----------RCLYC-MPEDGVELAPRSALLTSEEIVRLARLFVRAGVTKIR---L 180 Query: 91 TGGEPLLQVDVP----LIQALNKRGFE-IAVETNG 120 TGGEP ++ D+ + L G E +A+ TNG Sbjct: 181 TGGEPTIRADLEDIVSALSDLRADGLEDVAMTTNG 215 >gi|148378102|ref|YP_001252643.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum A str. ATCC 3502] gi|153931273|ref|YP_001382501.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum A str. ATCC 19397] gi|153934804|ref|YP_001386053.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum A str. Hall] gi|148287586|emb|CAL81651.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum A str. ATCC 3502] gi|152927317|gb|ABS32817.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum A str. ATCC 19397] gi|152930718|gb|ABS36217.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum A str. Hall] Length = 171 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 20/95 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 R VF SGC Q++ FC G + ++ + IE Sbjct: 23 RSVVFV--SGCKHNCKECQNKEMQ--SFC----------YGDKISLKDILKRIESNVPL- 67 Query: 82 EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114 R +GGEPL L + + G I Sbjct: 68 ---IRGVTFSGGEPLEHIKELSSLAEEIKSLGLNI 99 >gi|57237169|ref|YP_178181.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni RM1221] gi|81557615|sp|Q5HX04|MOAA_CAMJR RecName: Full=Molybdenum cofactor biosynthesis protein A gi|57165973|gb|AAW34752.1| molybdenum cofactor biosynthesis protein [Campylobacter jejuni RM1221] Length = 320 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 6/91 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N R + +C +C K + ++L ++ G ++ R +TG Sbjct: 11 NYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLSFEELFLFVKAAMDEGIEKIR---ITG 67 Query: 93 GEPLLQVDVP-LIQALNK--RGFEIAVETNG 120 GEPLL+ D+ I+ ++ ++A+ TNG Sbjct: 68 GEPLLRKDLSIFIKMISDYKSDIDLAITTNG 98 >gi|291087830|ref|ZP_06347617.2| molybdenum cofactor biosynthesis protein A [Clostridium sp. M62/1] gi|291073722|gb|EFE11086.1| molybdenum cofactor biosynthesis protein A [Clostridium sp. M62/1] Length = 305 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 13/79 (16%) Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRG--FEIAVETNG-- 120 ++L + E G + +TGGEPLL+ D P I+ L ++ + TNG Sbjct: 16 TYEELLLVAEASVGLGIDRFK---ITGGEPLLRKDCPDFIRRLKALPGVRQVTLTTNGLL 72 Query: 121 -----TIEPPQGIDWICVS 134 G+D + VS Sbjct: 73 LPEHLEELLSAGLDGVNVS 91 >gi|147897677|gb|AAI40422.1| Molybdenum cofactor synthesis 1 [synthetic construct] gi|261857660|dbj|BAI45352.1| molybdenum cofactor synthesis 1 [synthetic construct] Length = 636 Score = 35.8 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + K +++ L G + R LT Sbjct: 80 CNL-----------RCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGIDKIR---LT 125 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GGEPL++ D V ++ L + G I V TNG Sbjct: 126 GGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNG 157 >gi|328952133|ref|YP_004369467.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109] gi|328452457|gb|AEB08286.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109] Length = 363 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 17/96 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL A CR G G + L+++ +LT Sbjct: 30 CNLAC--------AHCR-----AAAGMGPYEGELTTAEGKALLDD---VAGMGPAVIILT 73 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 GGEPLL+ D+ L G + + NGT+ P+ Sbjct: 74 GGEPLLRKDIFELAAYGAGLGHRMVMAVNGTLLTPE 109 >gi|327399957|ref|YP_004340796.1| Radical SAM domain-containing protein [Archaeoglobus veneficus SNP6] gi|327315465|gb|AEA46081.1| Radical SAM domain protein [Archaeoglobus veneficus SNP6] Length = 431 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 7/91 (7%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 +R + +C++C ++ ++ D +E GEPL+ + Sbjct: 55 NRCNFRCKYCIRNYWKADLLDMDLTMFRKILDSFDEVERLILYGF-------GEPLIHKN 107 Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 + + L K E+ + TNG+I+ + +D + Sbjct: 108 IVEMLDLAKSKSEVLLTTNGSIKLDKVVDKV 138 >gi|298673984|ref|YP_003725734.1| wyosine base formation domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298286972|gb|ADI72938.1| Wyosine base formation domain protein [Methanohalobium evestigatum Z-7303] Length = 311 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%) Query: 76 EQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 E+W+ K + GEP L +P LI K G V TNGT Sbjct: 117 ERWMEANKPEHAAISLSGEPTLYPYLPELIDEFTKEGITTFVVTNGTRP 165 >gi|295402412|ref|ZP_06812366.1| molybdenum cofactor biosynthesis protein A [Geobacillus thermoglucosidasius C56-YS93] gi|294975575|gb|EFG51199.1| molybdenum cofactor biosynthesis protein A [Geobacillus thermoglucosidasius C56-YS93] Length = 340 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 10/87 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV----LTGGEPL 96 D+ + +C +C I G D+L IEE + E V +TGGEPL Sbjct: 25 DQCNFRCVYC--MPAEIFGPNFRFLREDELL-TIEEMTLLAESFAELGVEKIRITGGEPL 81 Query: 97 LQVDVP-LIQALNK-RGFE-IAVETNG 120 L+ D+ I+ L + G I + TNG Sbjct: 82 LRRDLDVFIERLVRIPGIRDIGLTTNG 108 >gi|298529804|ref|ZP_07017207.1| Radical SAM domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511240|gb|EFI35143.1| Radical SAM domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 394 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 8/92 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLT 91 + R + +C C + +G + ++I + + + + Sbjct: 40 PVVVWNMTRRCNLKCVHC---YAQALDEQGTDEIDTPAAKEIINDL---ADYGAPVMLFS 93 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPL++ D+ L RG + TNGT+ Sbjct: 94 GGEPLVRRDLVELASHAVGRGMRAVISTNGTL 125 >gi|218230941|ref|YP_002366857.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus B4264] gi|229150393|ref|ZP_04278610.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1550] gi|218158898|gb|ACK58890.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus B4264] gi|228633090|gb|EEK89702.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1550] Length = 306 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-R 110 D+ +Q D++ L G + R LTGGEPLL+ D+P LI L K Sbjct: 9 DYAFLQEEC--LLTFDEIERLARLFISMGVNKIR---LTGGEPLLRKDLPKLIGRLAKLE 63 Query: 111 GFE-IAVETNG 120 G + I + TNG Sbjct: 64 GLKDIGLTTNG 74 >gi|118088023|ref|XP_419475.2| PREDICTED: similar to molybdenum cofactor synthesis-step 1 protein [Gallus gallus] Length = 724 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N ++ + +C++C G+Q T Q ++I + ++ LTG Sbjct: 116 NYLRISLTEKCNLRCQYC-MPEEGVQLTPKSELLTAQ--EIITLAGLFVKEGVEKIRLTG 172 Query: 93 GEPLLQVD-VPLIQAL-NKRGFE-IAVETNG 120 GEPL++ D V ++ L G + IAV TNG Sbjct: 173 GEPLIRPDVVDIVGQLYKLEGLKTIAVTTNG 203 >gi|197098710|ref|NP_001126377.1| molybdenum cofactor biosynthesis protein 1 [Pongo abelii] gi|55731254|emb|CAH92341.1| hypothetical protein [Pongo abelii] Length = 385 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + K +++ L G + R LT Sbjct: 80 CNL-----------RCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGVDKIR---LT 125 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GGEPL++ D V ++ L + G I V TNG Sbjct: 126 GGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNG 157 >gi|242280943|ref|YP_002993072.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638] gi|242123837|gb|ACS81533.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638] Length = 298 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 23/111 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL- 90 CNL +C++C G + + L +++E K R L Sbjct: 18 CNL-----------RCKWC----ALDHGKERKIMPREVLEKVMQELGSGVFKNLRRIDLH 62 Query: 91 TGGEPLLQVDVPLIQALNKRG-------FEIAVETNGTIEPPQGIDWICVS 134 GGE LL D+P + ++ +R I + TNG + P+ + IC S Sbjct: 63 NGGETLLHPDLPGMLSVIRRHRPSIPSSVTIGLLTNGMLLTPKVSEQICRS 113 >gi|291326444|ref|ZP_06124517.2| molybdenum cofactor biosynthesis protein A [Providencia rettgeri DSM 1131] gi|291314204|gb|EFE54657.1| molybdenum cofactor biosynthesis protein A [Providencia rettgeri DSM 1131] Length = 372 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 7/83 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D + +C +C + GR+ L ++ E +TGGEP ++ D Sbjct: 67 DVCNFRCTYC----LPDGYKPSGRHEFLTLDEIRRISTAFAELGTEKVRITGGEPTMRKD 122 Query: 101 V-PLIQALNKRG--FEIAVETNG 120 +I A+N+ +IAV TNG Sbjct: 123 FSDIIAAINENESIKKIAVTTNG 145 >gi|253701529|ref|YP_003022718.1| molybdenum cofactor biosynthesis protein A [Geobacter sp. M21] gi|251776379|gb|ACT18960.1| molybdenum cofactor biosynthesis protein A [Geobacter sp. M21] Length = 326 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 8/92 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLT 91 N DR + +C +C G++ + + ++L + G ++ R +T Sbjct: 12 NYLRLSVTDRCNMRCSYC-MPAQGVEKLEHKEMLSYEELYRVAGACIAQGIEKIR---VT 67 Query: 92 GGEPLLQV-DVPLIQALNK-RGF-EIAVETNG 120 GGEPL++ VP ++ L++ G E+ + TNG Sbjct: 68 GGEPLVRKGLVPFLERLSRVPGLKELVLTTNG 99 >gi|145590325|ref|YP_001152327.1| putative molybdenum cofactor biosynthesis protein A [Pyrobaculum arsenaticum DSM 13514] gi|145282093|gb|ABP49675.1| GTP cyclohydrolase subunit MoaA [Pyrobaculum arsenaticum DSM 13514] Length = 310 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Query: 90 LTGGEPLLQVDVPLIQA-LNKRGFEIAVETNG 120 +TGGEPLL+ D+ LI A + K G + V TNG Sbjct: 63 ITGGEPLLRRDIDLIVANVAKTGAYVTVTTNG 94 >gi|16766405|ref|NP_462020.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197265423|ref|ZP_03165497.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|16421657|gb|AAL21979.1| putative oxidase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197243678|gb|EDY26298.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|312914126|dbj|BAJ38100.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225777|gb|EFX50831.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 378 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L DL + +E + + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLDADVAWAQGREVKTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L EI +E N GT+E + ID+ Sbjct: 66 GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113 >gi|16128749|ref|NP_415302.1| molybdopterin biosynthesis protein A [Escherichia coli str. K-12 substr. MG1655] gi|89107632|ref|AP_001412.1| molybdopterin biosynthesis protein A [Escherichia coli str. K-12 substr. W3110] gi|170080440|ref|YP_001729760.1| molybdopterin biosynthesis protein A [Escherichia coli str. K-12 substr. DH10B] gi|238900040|ref|YP_002925836.1| molybdopterin biosynthesis protein A [Escherichia coli BW2952] gi|266540|sp|P30745|MOAA_ECOLI RecName: Full=Molybdenum cofactor biosynthesis protein A gi|226704854|sp|B1X7B1|MOAA_ECODH RecName: Full=Molybdenum cofactor biosynthesis protein A gi|259495864|sp|C4ZXV3|MOAA_ECOBW RecName: Full=Molybdenum cofactor biosynthesis protein A gi|42008|emb|CAA49861.1| moaA [Escherichia coli K-12] gi|1651354|dbj|BAA35439.1| molybdopterin biosynthesis protein A [Escherichia coli str. K12 substr. W3110] gi|1786999|gb|AAC73868.1| molybdopterin biosynthesis protein A [Escherichia coli str. K-12 substr. MG1655] gi|169888275|gb|ACB01982.1| molybdopterin biosynthesis protein A [Escherichia coli str. K-12 substr. DH10B] gi|238861799|gb|ACR63797.1| molybdopterin biosynthesis protein A [Escherichia coli BW2952] gi|260450072|gb|ACX40494.1| molybdenum cofactor biosynthesis protein A [Escherichia coli DH1] gi|315135431|dbj|BAJ42590.1| molybdenum cofactor biosynthesis protein A [Escherichia coli DH1] Length = 329 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFARLGTEKVR---LTGGEPSLR 77 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 78 RDFTDIIAAVRENDAIRQIAVTTNG 102 >gi|67924395|ref|ZP_00517824.1| Radical SAM [Crocosphaera watsonii WH 8501] gi|67853756|gb|EAM49086.1| Radical SAM [Crocosphaera watsonii WH 8501] Length = 338 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 + GGEPLL + +++ L +R + + TN I + + SP + Sbjct: 72 GAPVVSIPGGEPLLHPQIDEIVKGLVERKKFVYLCTN-AILLEKSLHKFEPSPYFCFSVH 130 Query: 143 IKGGQE 148 + G +E Sbjct: 131 LDGLRE 136 >gi|300920028|ref|ZP_07136487.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 115-1] gi|300412975|gb|EFJ96285.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 115-1] Length = 352 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 45 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 100 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 101 RDFTDIIAAVRENDAIRQIAVTTNG 125 >gi|297521490|ref|ZP_06939876.1| molybdenum cofactor biosynthesis protein A [Escherichia coli OP50] Length = 267 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 78 RDFTDIIAAVRENDAIRQIAVTTNG 102 >gi|269215652|ref|ZP_06159506.1| radical SAM domain protein [Slackia exigua ATCC 700122] gi|269131139|gb|EEZ62214.1| radical SAM domain protein [Slackia exigua ATCC 700122] Length = 886 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + + + G + +D +A + + ++T Sbjct: 84 CNLACAHCRAAAHCE------AYPGELSLDECKAVMDDIASITD----------PILIVT 127 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPL++ D+ +I + G + TNGT+ Sbjct: 128 GGEPLMRPDIWEIIDYAFEVGLHPVIGTNGTL 159 >gi|312112039|ref|YP_003990355.1| molybdenum cofactor biosynthesis protein A [Geobacillus sp. Y4.1MC1] gi|311217140|gb|ADP75744.1| molybdenum cofactor biosynthesis protein A [Geobacillus sp. Y4.1MC1] Length = 340 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 10/87 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV----LTGGEPL 96 D+ + +C +C I G D+L IEE + E V +TGGEPL Sbjct: 25 DQCNFRCVYC--MPAEIFGPNFRFLREDELL-TIEEMTLLAESFAELGVEKIRITGGEPL 81 Query: 97 LQVDVP-LIQALNK-RGFE-IAVETNG 120 L+ D+ I+ L + G I + TNG Sbjct: 82 LRRDLDVFIERLVRIPGIRDIGLTTNG 108 >gi|229495601|ref|ZP_04389334.1| coenzyme PQQ synthesis protein E [Porphyromonas endodontalis ATCC 35406] gi|229317584|gb|EEN83484.1| coenzyme PQQ synthesis protein E [Porphyromonas endodontalis ATCC 35406] Length = 366 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 14/90 (15%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + C D+D + ++ +++ + + T Sbjct: 41 CNLACKHC----GSDCHV-DSD--------AKELSGEEFLRVVDSITPHVDPHKVLVIFT 87 Query: 92 GGEPLLQVDVPLI-QALNKRGFEIAVETNG 120 GGE L++ D+ I L +RG+ + TNG Sbjct: 88 GGEALVRQDLDAIGLELYRRGYPWGLVTNG 117 >gi|228986654|ref|ZP_04146784.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772985|gb|EEM21421.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 307 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 13/85 (15%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 + + D++ + G ++ R +TGGEPLL+ +P LI LNK G E I + Sbjct: 14 SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPQLIGRLNKIDGVEDIGL 70 Query: 117 ETNGTIEPPQGIDW-------ICVS 134 TNG++ D + VS Sbjct: 71 TTNGSLLKKFAPDLYKAGLSRVTVS 95 >gi|227488457|ref|ZP_03918773.1| pyruvate radical-activating enzyme [Corynebacterium glucuronolyticum ATCC 51867] gi|227543068|ref|ZP_03973117.1| pyruvate radical-activating enzyme [Corynebacterium glucuronolyticum ATCC 51866] gi|227091671|gb|EEI26983.1| pyruvate radical-activating enzyme [Corynebacterium glucuronolyticum ATCC 51867] gi|227181290|gb|EEI62262.1| pyruvate radical-activating enzyme [Corynebacterium glucuronolyticum ATCC 51866] Length = 215 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 38/127 (29%), Gaps = 30/127 (23%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 VF +GC C +C + R + E Sbjct: 22 TATVF--TTGCP-----------WACVYC-----HNPALQDPRGQTTSTMAEVLELAAAR 63 Query: 82 EKEGRYCVLTGGEPLLQVDVP-LIQALNKRG--FEIAVETNGTIE---------PPQGID 129 + V +GGEP + +P I+A+ F I + T G + P D Sbjct: 64 RRLLDGVVFSGGEPTMHRGLPDAIRAVRATEPTFGIGLHTCGYLPERLRSLVEDPSTCPD 123 Query: 130 WICVSPK 136 WI + K Sbjct: 124 WIGLDVK 130 >gi|197121329|ref|YP_002133280.1| radical SAM protein [Anaeromyxobacter sp. K] gi|196171178|gb|ACG72151.1| Radical SAM domain protein [Anaeromyxobacter sp. K] Length = 357 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 19/123 (15%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + + R LA + E+ G T Sbjct: 34 CNLACAM--------CP-CGSARARGRPRSPPRRMAPALAAGVLEERR-GSPLRELIPST 83 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 GEPLL +P L+ G V TNGT W ++ + +++K Sbjct: 84 MGEPLLWPALPDLLARAATLGIRGNVTTNGTFPGRGAAGW--------AEVLVPACRDVK 135 Query: 151 LVF 153 + + Sbjct: 136 ISW 138 >gi|194734759|ref|YP_002116892.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197301053|ref|ZP_02663477.2| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194710261|gb|ACF89482.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288715|gb|EDY28090.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 447 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GC++ + + C +C + + + + K R + + L I + + Sbjct: 20 AGCHVMTKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 79 Query: 87 YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120 GGEP + + +P + AL ++ G +I A++TNG Sbjct: 80 DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 120 >gi|170757568|ref|YP_001779721.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum B1 str. Okra] gi|169122780|gb|ACA46616.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum B1 str. Okra] Length = 171 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 20/95 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 R VF SGC Q++ FC G + ++ + IE Sbjct: 23 RSVVFV--SGCKHNCKECQNKEMQ--SFC----------YGDKISLKDILKRIESNVPL- 67 Query: 82 EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114 R +GGEPL L + + G I Sbjct: 68 ---IRGVTFSGGEPLEHIKELSSLAEEIKSLGLNI 99 >gi|153938755|ref|YP_001389458.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum F str. Langeland] gi|152934651|gb|ABS40149.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum F str. Langeland] gi|295317562|gb|ADF97939.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum F str. 230613] Length = 174 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 20/95 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 R VF SGC Q++ FC G + ++ + IE Sbjct: 23 RSVVFV--SGCKHNCKECQNKEMQ--SFC----------YGDKISLKDILKRIESNVPL- 67 Query: 82 EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114 R +GGEPL L + + G I Sbjct: 68 ---IRGVTFSGGEPLEHIKELSSLAEEIKSLGLNI 99 >gi|26246752|ref|NP_752792.1| molybdenum cofactor biosynthesis protein A [Escherichia coli CFT073] gi|188494750|ref|ZP_03002020.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 53638] gi|26107151|gb|AAN79335.1|AE016757_239 Molybdenum cofactor biosynthesis protein A [Escherichia coli CFT073] gi|188489949|gb|EDU65052.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 53638] gi|332104728|gb|EGJ08074.1| molybdenum cofactor biosynthesis protein A [Shigella sp. D9] Length = 356 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 49 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 104 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 105 RDFTDIIAAVRENDAIRQIAVTTNG 129 >gi|327311840|ref|YP_004338737.1| Radical SAM domain-containing protein [Thermoproteus uzoniensis 768-20] gi|326948319|gb|AEA13425.1| Radical SAM domain protein [Thermoproteus uzoniensis 768-20] Length = 372 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 16/73 (21%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F F+GCN +C FC + + G LA + G + Sbjct: 153 TIF--FAGCNF-----------RCAFCQNWDISQRPENGAEATPRHLALIQIRLRAEGAR 199 Query: 84 EGRYCVLTGGEPL 96 + GGEP Sbjct: 200 NINWV---GGEPT 209 >gi|291547425|emb|CBL20533.1| GTP cyclohydrolase subunit MoaA [Ruminococcus sp. SR1/5] Length = 302 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAVETN 119 R + Q +++ + E R LTGGEPL++ +P L++ L G E + + TN Sbjct: 10 ERSLILQEEEILRICRVMAELGIRKIKLTGGEPLVRPRMPQLVEKLKNMPGIEKVTLTTN 69 Query: 120 GTIEPPQGIDW 130 G + Q D+ Sbjct: 70 GVLLKDQMSDF 80 >gi|268323533|emb|CBH37121.1| putative L-lysine 2,3-aminomutase [uncultured archaeon] Length = 515 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 4/71 (5%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 CRFC G R +Q+ IE +I +E R +++GG+PLL D L Sbjct: 110 CRFC--TRKRRVGDPFKRIKKEQVLQGIE--YIREREEIRDVLISGGDPLLLNDDELAFF 165 Query: 107 LNKRGFEIAVE 117 L + VE Sbjct: 166 LERLKKIKHVE 176 >gi|256811140|ref|YP_003128509.1| Radical SAM domain protein [Methanocaldococcus fervens AG86] gi|256794340|gb|ACV25009.1| Radical SAM domain protein [Methanocaldococcus fervens AG86] Length = 280 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 26/97 (26%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C +V + K + + I+ K T Sbjct: 12 CNL-----------NCIYC---YVNNKDNKD--MDFKTAKNAIDYLLSLDNKIK--IQFT 53 Query: 92 GGEPLLQVDVPLIQALNK------RGFEIAVETNGTI 122 GGEPLL + LI+ + A++TNGT+ Sbjct: 54 GGEPLL--NFKLIEKVVDYCDNLNANISYAIQTNGTL 88 >gi|296123595|ref|YP_003631373.1| hopanoid biosynthesis associated radical SAM protein HpnH [Planctomyces limnophilus DSM 3776] gi|296015935|gb|ADG69174.1| hopanoid biosynthesis associated radical SAM protein HpnH [Planctomyces limnophilus DSM 3776] Length = 402 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%) Query: 79 ITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKA 137 E + GGEPLL + ++ L R + + TN I + + SP Sbjct: 67 AADECGAPVISIPGGEPLLHPQIGEIVAGLVARKKFVYLCTN-AILLEKHLHKFQPSPYL 125 Query: 138 GCDLKIKGGQE 148 + + G QE Sbjct: 126 TFSIHLDGPQE 136 >gi|189219894|ref|YP_001940535.1| Molybdenum cofactor biosynthesis enzyme [Methylacidiphilum infernorum V4] gi|189186752|gb|ACD83937.1| Molybdenum cofactor biosynthesis enzyme [Methylacidiphilum infernorum V4] Length = 337 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 5/85 (5%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C +G K + + ++L ++ + R +TGGEPL++ Sbjct: 30 DRCNERCIYCFPQDLGFLSKKDSQLSFEELYAVV--FHGAMKHGFRDFRITGGEPLVRKG 87 Query: 101 -VPLIQAL-NKRGF-EIAVETNGTI 122 + I+ L G + + TNGT+ Sbjct: 88 TLAFIRRLTRTPGISSVRLSTNGTL 112 >gi|167518722|ref|XP_001743701.1| hypothetical protein [Monosiga brevicollis MX1] gi|163777663|gb|EDQ91279.1| predicted protein [Monosiga brevicollis MX1] Length = 353 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 25/96 (26%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV-DQLADLIEEQWITGEKEGRYCV- 89 CNL +C++C G + ++L E Q + Sbjct: 49 CNL-----------RCQYC-------MPEDGIKLTASERLISFEERQQLAALFGRMGVTK 90 Query: 90 --LTGGEPLLQV-DVPLIQALNKRGF--EIAVETNG 120 LTGGEPL+ V ++++L E+ + TNG Sbjct: 91 FRLTGGEPLVYPRLVEVVESLKALPNTTEVNMTTNG 126 >gi|118470199|ref|YP_886346.1| acyl-CoA synthase [Mycobacterium smegmatis str. MC2 155] gi|118171486|gb|ABK72382.1| acyl-CoA synthase [Mycobacterium smegmatis str. MC2 155] Length = 515 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 10/91 (10%) Query: 32 CNLWSGREQDRLSAQCRFC----DTDFVGIQGTKGGRYN---VDQLADLIEEQWITGEKE 84 CN W + C D+ + GG + + +I E Sbjct: 210 CNGWCFTWAVGAAGGTHICLRKIDSAEIWRWLRGGGITHFSAAPTVLTMIAEDPSAQPLP 269 Query: 85 GRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115 R V TGG P L+ L GF++ Sbjct: 270 ARVHVDTGGAP---PSPALLARLTPLGFDVT 297 >gi|154245743|ref|YP_001416701.1| pyrroloquinoline quinone biosynthesis protein PqqE [Xanthobacter autotrophicus Py2] gi|154159828|gb|ABS67044.1| coenzyme PQQ biosynthesis protein E [Xanthobacter autotrophicus Py2] Length = 391 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 6/80 (7%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R +C +C + + ++ E G + L+GGEP + D+ Sbjct: 35 RCPLRCPYCSNPLELERRE--AELDTATWKRVLSEAAALG---VLHVHLSGGEPTARADL 89 Query: 102 -PLIQALNKRGFEIAVETNG 120 L G + T+G Sbjct: 90 VELTAHCAAEGLYTNLITSG 109 >gi|115523997|ref|YP_780908.1| molybdenum cofactor biosynthesis protein A [Rhodopseudomonas palustris BisA53] gi|115517944|gb|ABJ05928.1| GTP cyclohydrolase subunit MoaA [Rhodopseudomonas palustris BisA53] Length = 343 Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ + +++L L G ++ R LTGGEPL+ Sbjct: 32 DRCDFRCAYCMSEDMTFL----PRADLLTLEELDRLCSTFIAKGVRKLR---LTGGEPLV 84 Query: 98 QVD-VPLIQAL---NKRG--FEIAVETNGT 121 + + + L+++L G E+ + TNG+ Sbjct: 85 RRNMISLVRSLSRHLDSGALHELTLTTNGS 114 >gi|331676515|ref|ZP_08377211.1| molybdenum cofactor biosynthesis protein A [Escherichia coli H591] gi|331075204|gb|EGI46502.1| molybdenum cofactor biosynthesis protein A [Escherichia coli H591] Length = 354 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 47 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 102 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 103 RDFTDIIAAVRENDAIRQIAVTTNG 127 >gi|331651784|ref|ZP_08352803.1| molybdenum cofactor biosynthesis protein A [Escherichia coli M718] gi|331050062|gb|EGI22120.1| molybdenum cofactor biosynthesis protein A [Escherichia coli M718] Length = 354 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 47 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 102 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 103 RDFTDIIAAVRENDAIRQIAVTTNG 127 >gi|331641294|ref|ZP_08342429.1| molybdenum cofactor biosynthesis protein A [Escherichia coli H736] gi|331038092|gb|EGI10312.1| molybdenum cofactor biosynthesis protein A [Escherichia coli H736] Length = 354 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 47 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 102 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 103 RDFTDIIAAVRENDAIRQIAVTTNG 127 >gi|323967379|gb|EGB62800.1| molybdenum coproteinbiosynthesis protein A [Escherichia coli M863] gi|323976834|gb|EGB71922.1| molybdenum coproteinbiosynthesis protein A [Escherichia coli TW10509] Length = 354 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 47 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 102 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 103 RDFTDIIAAVRENDAIRQIAVTTNG 127 >gi|325967917|ref|YP_004244109.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28] gi|323707120|gb|ADY00607.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28] Length = 572 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 19/115 (16%) Query: 30 SGCNLWSGREQD----------RLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQW 78 GC L + + R + +C C F ++Q+ ++ Sbjct: 141 QGCGLCPVHKTNTVLAIIDVTNRCNMKCPVC---FANAYAAGYVYEPTLEQIEYMLRTLR 197 Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-RGFEIAVE--TNGTIEPPQGIDW 130 +GGEP L+ D+P I + K GF+ +E TNG I ID+ Sbjct: 198 AQKPWAPNAIQFSGGEPTLRNDLPEIIRMAKILGFD-HIEVNTNG-IRIANDIDY 250 >gi|310779097|ref|YP_003967430.1| molybdenum cofactor biosynthesis protein A [Ilyobacter polytropus DSM 2926] gi|309748420|gb|ADO83082.1| molybdenum cofactor biosynthesis protein A [Ilyobacter polytropus DSM 2926] Length = 315 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 19/92 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C R + +++ + + T Sbjct: 20 CNL-----------RCIYC-----KPDECIEARRDPMTKREVVSMVKAMADLGVKKVRFT 63 Query: 92 GGEPLLQVDV-PLIQALNK-RGF-EIAVETNG 120 GGEPLL+ D+ +I ++K G +IA+ TNG Sbjct: 64 GGEPLLRKDITEIISEVSKIEGIDDIALTTNG 95 >gi|308051310|ref|YP_003914876.1| molybdenum cofactor biosynthesis protein A [Ferrimonas balearica DSM 9799] gi|307633500|gb|ADN77802.1| molybdenum cofactor biosynthesis protein A [Ferrimonas balearica DSM 9799] Length = 328 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 65/166 (39%), Gaps = 29/166 (17%) Query: 41 DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 D +C +C D D + + +++L + + G ++ R LTGGEPL++ Sbjct: 20 DHCDFRCVYCMDEDPTFL--PRDQVLTLEELHQIAQAFTELGVEKIR---LTGGEPLVKS 74 Query: 100 DVP-LIQALNKR-GFE-IAVETNGT----IEPPQG--------IDWICVSPKAGCDLKIK 144 D+ L++ + G + + TNG+ P I + P+ + Sbjct: 75 DLTYLVEQVAALPGLRDLCLTTNGSRLKKFAQPLQAAGLKRINISLDTLDPERFT--AVT 132 Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQ--PMDGPFLEENTNLA 188 +L+ V ++ + E FER L M G +E +L Sbjct: 133 RNGKLERVLAGIDAAIEA----GFERIKLNTVAMKGSNDDEILDLV 174 >gi|300822935|ref|ZP_07103070.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 119-7] gi|300524476|gb|EFK45545.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 119-7] Length = 352 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 45 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 100 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 101 RDFTDIIAAVRENDAIRQIAVTTNG 125 >gi|300957728|ref|ZP_07169915.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 175-1] gi|300315544|gb|EFJ65328.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 175-1] Length = 352 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 45 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 100 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 101 RDFTDIIAAVRENDAIRQIAVTTNG 125 >gi|295702571|ref|YP_003595646.1| hypothetical protein BMD_0385 [Bacillus megaterium DSM 319] gi|294800230|gb|ADF37296.1| conserved hypothetical protein [Bacillus megaterium DSM 319] Length = 372 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D + ++E R +TGGEP++ + Sbjct: 42 RCEHCAVGYT-LQPKDPNALPLDLILKRLDEI-----PTLRALSITGGEPMMSLSSVKNY 95 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 VPL++ ++RG + +N T++ Sbjct: 96 VVPLLKYAHERGVRTQINSNLTLDL 120 >gi|281177917|dbj|BAI54247.1| molybdopterin biosynthesis protein A [Escherichia coli SE15] Length = 340 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 33 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 88 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 89 RDFTDIIAAVRENDAIRQIAVTTNG 113 >gi|227884257|ref|ZP_04002062.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 83972] gi|300816426|ref|ZP_07096648.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 107-1] gi|300907109|ref|ZP_07124775.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 84-1] gi|300922805|ref|ZP_07138891.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 182-1] gi|300929417|ref|ZP_07144886.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 187-1] gi|300939816|ref|ZP_07154454.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 21-1] gi|300993256|ref|ZP_07180303.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 45-1] gi|301020728|ref|ZP_07184796.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 69-1] gi|301051300|ref|ZP_07198126.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 185-1] gi|301306932|ref|ZP_07212976.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 124-1] gi|309797958|ref|ZP_07692337.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 145-7] gi|227839009|gb|EEJ49475.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 83972] gi|300297059|gb|EFJ53444.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 185-1] gi|300398539|gb|EFJ82077.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 69-1] gi|300401154|gb|EFJ84692.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 84-1] gi|300406664|gb|EFJ90202.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 45-1] gi|300420837|gb|EFK04148.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 182-1] gi|300455348|gb|EFK18841.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 21-1] gi|300462617|gb|EFK26110.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 187-1] gi|300531116|gb|EFK52178.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 107-1] gi|300837858|gb|EFK65618.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 124-1] gi|308118446|gb|EFO55708.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 145-7] gi|315257767|gb|EFU37735.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 85-1] gi|315292589|gb|EFU51941.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 153-1] gi|315299288|gb|EFU58540.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 16-3] gi|324018559|gb|EGB87778.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 117-3] Length = 352 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 45 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 100 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 101 RDFTDIIAAVRENDAIRQIAVTTNG 125 >gi|297200835|ref|ZP_06918232.1| radical SAM domain-containing protein [Streptomyces sviceus ATCC 29083] gi|197712406|gb|EDY56440.1| radical SAM domain-containing protein [Streptomyces sviceus ATCC 29083] Length = 383 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 37/108 (34%), Gaps = 14/108 (12%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + + DQLA I E L Sbjct: 18 CNLACDHCYVYELLDRTW------RHKPAVMANGTADQLARRIAEHARRHALSRVRVTLH 71 Query: 92 GGEPLLQ---VDVPLIQALNK--RG---FEIAVETNGTIEPPQGIDWI 131 GGEPL+ L++ L + RG +I+V++N T+ P +D Sbjct: 72 GGEPLMAGRSRIEHLLKVLREELRGTAVCDISVQSNVTLLNPSWMDLF 119 >gi|161616068|ref|YP_001590033.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168242907|ref|ZP_02667839.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194450201|ref|YP_002047092.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205354027|ref|YP_002227828.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858365|ref|YP_002245016.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238909902|ref|ZP_04653739.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|161365432|gb|ABX69200.1| hypothetical protein SPAB_03869 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194408505|gb|ACF68724.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205273808|emb|CAR38803.1| possible oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205338001|gb|EDZ24765.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|206710168|emb|CAR34524.1| possible oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326629140|gb|EGE35483.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 378 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L DL + +E + + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLDADVAWAQGREVKTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L EI +E N GT+E + ID+ Sbjct: 66 GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113 >gi|170020863|ref|YP_001725817.1| molybdenum cofactor biosynthesis protein A [Escherichia coli ATCC 8739] gi|169755791|gb|ACA78490.1| molybdenum cofactor biosynthesis protein A [Escherichia coli ATCC 8739] gi|307552626|gb|ADN45401.1| molybdenum cofactor biosynthesis protein A [Escherichia coli ABU 83972] Length = 340 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 33 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 88 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 89 RDFTDIIAAVRENDAIRQIAVTTNG 113 >gi|117622964|ref|YP_851877.1| molybdenum cofactor biosynthesis protein A [Escherichia coli APEC O1] gi|115512088|gb|ABJ00163.1| molybdenum cofactor biosynthesis protein A [Escherichia coli APEC O1] Length = 354 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 47 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 102 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 103 RDFTDIIAAVRENDAIRQIAVTTNG 127 >gi|326942510|gb|AEA18406.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar chinensis CT-43] Length = 337 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L + G ++ R +TG Sbjct: 22 DRCNFRCTYCMPAEIFGPD--YAFLKDEF--LLTFDEIERLAKLFVNIGVRKIR---ITG 74 Query: 93 GEPLLQVDVP-LIQALNKRG--FEIAVETN 119 GEPLL+ D+ LI L K +I + TN Sbjct: 75 GEPLLRKDLAKLIARLVKIDGLIDIGLTTN 104 >gi|324114345|gb|EGC08314.1| molybdenum coproteinbiosynthesis protein A [Escherichia fergusonii B253] Length = 354 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 47 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 102 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 103 RDFTDIIAAVRENDAIRQIAVTTNG 127 >gi|331645998|ref|ZP_08347101.1| molybdenum cofactor biosynthesis protein A [Escherichia coli M605] gi|331672292|ref|ZP_08373083.1| molybdenum cofactor biosynthesis protein A [Escherichia coli TA280] gi|331682288|ref|ZP_08382907.1| molybdenum cofactor biosynthesis protein A [Escherichia coli H299] gi|323947062|gb|EGB43075.1| molybdenum coprotein biosynthesis protein A [Escherichia coli H120] gi|323963028|gb|EGB58599.1| molybdenum coproteinbiosynthesis protein A [Escherichia coli H489] gi|324116204|gb|EGC10126.1| molybdenum coproteinbiosynthesis protein A [Escherichia coli E1167] gi|331044750|gb|EGI16877.1| molybdenum cofactor biosynthesis protein A [Escherichia coli M605] gi|331070487|gb|EGI41851.1| molybdenum cofactor biosynthesis protein A [Escherichia coli TA280] gi|331079919|gb|EGI51098.1| molybdenum cofactor biosynthesis protein A [Escherichia coli H299] Length = 354 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 47 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 102 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 103 RDFTDIIAAVRENDAIRQIAVTTNG 127 >gi|315287194|gb|EFU46606.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 110-3] Length = 352 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 45 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 100 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 101 RDFTDIIAAVRENDAIRQIAVTTNG 125 >gi|301327973|ref|ZP_07221138.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 78-1] gi|300845538|gb|EFK73298.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 78-1] Length = 352 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 45 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 100 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 101 RDFTDIIAAVRENDAIRQIAVTTNG 125 >gi|325679924|ref|ZP_08159493.1| radical SAM domain protein [Ruminococcus albus 8] gi|324108362|gb|EGC02609.1| radical SAM domain protein [Ruminococcus albus 8] Length = 366 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 25/100 (25%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 S CNL ++C + + + + +E + G + Sbjct: 69 TSKCNLHCAGCY----SRCS-----NATNDAEPVKQLSAEDWLRIFDEADVLG---ISFI 116 Query: 89 VLTGGEPLLQVDVPLIQALNKRG------FEIAVETNGTI 122 +L GGEP+L+ D+ + G F I TNGT Sbjct: 117 LLAGGEPMLRRDI-----IEAAGRKQNILFPIF--TNGTY 149 >gi|224823898|ref|ZP_03697007.1| coenzyme PQQ biosynthesis protein E [Lutiella nitroferrum 2002] gi|224604353|gb|EEG10527.1| coenzyme PQQ biosynthesis protein E [Lutiella nitroferrum 2002] Length = 369 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 35/82 (42%), Gaps = 6/82 (7%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R +C +C + + + +++E G + + +GGEP+ + D+ Sbjct: 19 RCPLRCAYCSNPLALTPAS--AELSTAEWCAILDEAAEMGMLQVHF---SGGEPMARADL 73 Query: 102 P-LIQALNKRGFEIAVETNGTI 122 P L+ ++ G + T+G + Sbjct: 74 PELVAHASRLGLYSNLITSGVL 95 >gi|254427251|ref|ZP_05040958.1| molybdenum cofactor biosynthesis protein A [Alcanivorax sp. DG881] gi|196193420|gb|EDX88379.1| molybdenum cofactor biosynthesis protein A [Alcanivorax sp. DG881] Length = 337 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 23/102 (22%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R S DR +C +C + T R V L ++ + + + Sbjct: 23 VRLS--------VTDRCDFRCVYC----MAEDMTFVPRAQVLTLEEMGRLARVLVQLGVK 70 Query: 87 YCVLTGGEPLLQVDVP-------LIQALNKRGFEIAVETNGT 121 LTGGEPL++ DV I L + TNG Sbjct: 71 RIRLTGGEPLVRRDVARLVHDIGAIDGLRELNMT----TNGA 108 >gi|150006239|ref|YP_001300983.1| putative Fe-S oxidoreductase [Bacteroides vulgatus ATCC 8482] gi|149934663|gb|ABR41361.1| putative Fe-S oxidoreductase [Bacteroides vulgatus ATCC 8482] Length = 445 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 18/93 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C+ C + N L D ++ E G + + Sbjct: 111 CNL-----------KCKHC------FMLSGKKLENELTLEDWMKVLTSFKENGGEFVTFS 153 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123 GGEPL+ + P +I + G + V +NG + Sbjct: 154 GGEPLMFKNFPQIISHAHDLGLKSTVLSNGLLW 186 >gi|119474896|ref|ZP_01615249.1| pyrroloquinoline quinone biosynthesis protein PqqE [marine gamma proteobacterium HTCC2143] gi|119451099|gb|EAW32332.1| pyrroloquinoline quinone biosynthesis protein PqqE [marine gamma proteobacterium HTCC2143] Length = 378 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 6/89 (6%) Query: 33 NLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW E QC +C ++ V ++ + Q D+++ G + L+ Sbjct: 16 PLWLLAELSYACPLQCSYC-SNPVNYHESRSRELSTQQWKDVLKAGRKLGAVQLG---LS 71 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETN 119 GGEPL+ Q ++ GF + T+ Sbjct: 72 GGEPLVRQDLEEIVAEARGLGFYSNLITS 100 >gi|110804782|ref|YP_688302.1| molybdenum cofactor biosynthesis protein A [Shigella flexneri 5 str. 8401] gi|110614330|gb|ABF02997.1| molybdopterin biosynthesis, protein A [Shigella flexneri 5 str. 8401] Length = 340 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 33 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 88 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 89 RDFTDIIAAVRENDAIRQIAVTTNG 113 >gi|91209811|ref|YP_539797.1| molybdenum cofactor biosynthesis protein A [Escherichia coli UTI89] gi|237707261|ref|ZP_04537742.1| molybdenum cofactor biosynthesis protein A [Escherichia sp. 3_2_53FAA] gi|91071385|gb|ABE06266.1| molybdenum cofactor biosynthesis protein A [Escherichia coli UTI89] gi|226898471|gb|EEH84730.1| molybdenum cofactor biosynthesis protein A [Escherichia sp. 3_2_53FAA] Length = 356 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 49 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 104 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 105 RDFTDIIAAVRENDAIRQIAVTTNG 129 >gi|8101028|gb|AAF72521.1|AF248951_2 iron-sulfur oxidoreductase MdsB [Prevotella sp. RS2] Length = 419 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 26/103 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQ---GTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL +C +C ++ Q +G + D+L + ++I + Sbjct: 34 CNL-----------RCDYC--YYLEKQHLYANEGRQMLSDELLERFIREYIESQTTPE-V 79 Query: 89 VLT--GGEPLLQVDV--PLIQALN---KRGFEIA--VETNGTI 122 + T GGEPL++ + L RG IA ++TNGT+ Sbjct: 80 LFTWHGGEPLVRPLAFYEKVVRLQQRYARGRRIANSLQTNGTL 122 >gi|88800258|ref|ZP_01115825.1| Molybdenum cofactor biosynthesis enzyme [Reinekea sp. MED297] gi|88776973|gb|EAR08181.1| Molybdenum cofactor biosynthesis enzyme [Reinekea sp. MED297] Length = 322 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 22/114 (19%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRY-NVDQLADLIEEQ 77 GR + R S D + +C +C D G QG + + +L + Sbjct: 7 GRRFYYLRLS--------VTDVCNFRCSYCLPD----GYQGKPDEAFLSASELEAAVRGF 54 Query: 78 WITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GF-EIAVETNGTIEPPQGI 128 G ++ R LTGGEP L+ D+P +I LN+ G IAV TNG + PQ I Sbjct: 55 AQMGTQKIR---LTGGEPGLRSDLPEIIYRLNRIDGINNIAVTTNG-YKLPQRI 104 >gi|300947139|ref|ZP_07161353.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 116-1] gi|301646210|ref|ZP_07246106.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 146-1] gi|300453217|gb|EFK16837.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 116-1] gi|301075547|gb|EFK90353.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 146-1] Length = 352 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 45 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 100 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 101 RDFTDIIAAVRENDAIRQIAVTTNG 125 >gi|225874487|ref|YP_002755946.1| molybdenum cofactor biosynthesis protein A [Acidobacterium capsulatum ATCC 51196] gi|225793142|gb|ACO33232.1| molybdenum cofactor biosynthesis protein A [Acidobacterium capsulatum ATCC 51196] Length = 342 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 22/109 (20%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP----- 95 DR + +C +C T GT+G ++ +AD + I LTGGEP Sbjct: 32 DRCNYKCVYCRT------GTEGAQFAELPIADYLRLIRIFVSLGIEKVRLTGGEPLLRHG 85 Query: 96 ---LLQVDVPLIQALNKRGFEIAVETNGTIEPP-------QGIDWICVS 134 LL+ PL + L+ ++A+ TNG + G+ + VS Sbjct: 86 LLDLLRELKPL-RTLDGAPLDLALTTNGHLLASMAEPLREAGLQRVTVS 133 >gi|254502945|ref|ZP_05115096.1| molybdenum cofactor biosynthesis protein A [Labrenzia alexandrii DFL-11] gi|222439016|gb|EEE45695.1| molybdenum cofactor biosynthesis protein A [Labrenzia alexandrii DFL-11] Length = 351 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 22/93 (23%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ K ++++L L G ++ R LTGGEPL+ Sbjct: 40 DRCDFRCVYCMAEDMTFL----PKREVLSLEELDRLCTAFIEKGVRKLR---LTGGEPLV 92 Query: 98 QVDV-PLIQAL---NKRGFEIAVE-----TNGT 121 + ++ LI++L G A+E TNG+ Sbjct: 93 RKNIMSLIRSLGRHLDSG---ALEELTLTTNGS 122 >gi|242278039|ref|YP_002990168.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638] gi|242120933|gb|ACS78629.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638] Length = 356 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 15/98 (15%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDV-PL 103 +CRFC DF+ +Y ++ + + + +G GEP + + + Sbjct: 44 RCRFCGYDFMNYV----PKYLDLEIYR--QRIPGIAATGVKSIMFSGEGEPFMNCNFAEI 97 Query: 104 IQALNKRGFEIAVETNGTIEPPQG-------IDWICVS 134 A G ++ + TNGT+ P+ I WI VS Sbjct: 98 CTATLDAGIDVGITTNGTLMNPEKLRPILDRISWIKVS 135 >gi|78223302|ref|YP_385049.1| GTP cyclohydrolase subunit MoaA [Geobacter metallireducens GS-15] gi|78194557|gb|ABB32324.1| GTP cyclohydrolase subunit MoaA [Geobacter metallireducens GS-15] Length = 326 Score = 35.8 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 8/92 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 N DR + +C +C GI+ + +QL + E G ++ R +T Sbjct: 12 NYLRLSVTDRCNLRCTYC-MPASGIKKRAHSDILSYEQLHRIAEAAVAIGVEKIR---IT 67 Query: 92 GGEPLLQVDVP-LIQALNKRG--FEIAVETNG 120 GGEPL++ +P + L + ++ + TNG Sbjct: 68 GGEPLVRKGMPGFLAGLKRIPGLKKLVLTTNG 99 >gi|313683432|ref|YP_004061170.1| GTP cyclohydrolase subunit moaa [Sulfuricurvum kujiense DSM 16994] gi|313156292|gb|ADR34970.1| GTP cyclohydrolase subunit MoaA [Sulfuricurvum kujiense DSM 16994] Length = 321 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 20/168 (11%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 +R + +C++C + F + + ++L + I+ G K+ R +TGGEPLL+ Sbjct: 19 ERCNFRCQYCMPEKPFSWVPKEN--LLSFEELFEFIKVSIDEGIKKIR---ITGGEPLLR 73 Query: 99 VDVP-LIQALNK--RGFEIAVETN-----GTIEP--PQGIDWICVSPKAGCDLKIKGGQE 148 D+ I+ + ++A+ TN G+ + G+ + VS +I Sbjct: 74 EDLDTFIKMIYDYKNDIDLAMTTNAFLLKGSAKKLYDAGLRRLNVS-IDSLKPEIAEAIA 132 Query: 149 LKLVFPQVNVSPENYIGFDFE-RFSLQPMDGPFLEENTNLAISYCFQN 195 K V P V E + F+ + ++ PM G E + + YC Sbjct: 133 KKDVLPNVLAGIEEALRVGFKVKVNMVPMKGMNEGEVLD-VLEYCKDR 179 >gi|293395384|ref|ZP_06639668.1| pyruvate formate-lyase activating enzyme [Serratia odorifera DSM 4582] gi|291422068|gb|EFE95313.1| pyruvate formate-lyase activating enzyme [Serratia odorifera DSM 4582] Length = 299 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118 G + D++ + ++ G L+GGEP + D+ L++A + AVET Sbjct: 101 GEMKSADEIMATVLRDKPFYDRSGGGMTLSGGEPFMTPDLTLRLLKASRQHAIHTAVET 159 >gi|281600107|gb|ADA73091.1| Molybdenum cofactor biosynthesis protein A [Shigella flexneri 2002017] Length = 340 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 33 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 88 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 89 RDFTDIIAAVRENDAIRQIAVTTNG 113 >gi|162448533|ref|YP_001610900.1| molybdenum cofactor biosynthesis protein A [Sorangium cellulosum 'So ce 56'] gi|161159115|emb|CAN90420.1| probable molybdenum cofactor biosynthesis protein A [Sorangium cellulosum 'So ce 56'] Length = 329 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 17/103 (16%) Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLA--------DLIEEQWITGEKEGRYCVLTGGEPL 96 A+C FC ++G +V + D + +TGGEP Sbjct: 28 AKCHFC--VEELRPASRGRSLSVQKTVEDDDGRYFDAMAASLEALRPLDPTISVTGGEPS 85 Query: 97 LQVDVPLIQALNKR--GFEIAVETNGT-----IEPPQGIDWIC 132 +P I AL + G + + TNG+ E + IDWI Sbjct: 86 HDPRLPRILALGQAHQGRKRTLTTNGSGLLQQREGKRVIDWIV 128 >gi|157415937|ref|YP_001483193.1| hypothetical protein C8J_1619 [Campylobacter jejuni subsp. jejuni 81116] gi|157386901|gb|ABV53216.1| hypothetical protein C8J_1619 [Campylobacter jejuni subsp. jejuni 81116] gi|307748574|gb|ADN91844.1| radical SAM domain-containing protein [Campylobacter jejuni subsp. jejuni M1] gi|315931318|gb|EFV10287.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni 327] Length = 342 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 47/126 (37%), Gaps = 31/126 (24%) Query: 92 GGEPLLQVDVP-LIQAL--NKRGFEIAVETNGTIEP----------PQGIDWICVSP-KA 137 GGEPLL D+P LI L K+ ++ TNGTI+ + + I +S K Sbjct: 126 GGEPLLFKDLPKLIDYLNCQKKILTFSLVTNGTIDFKDELINKLKHSKKVRKITISNYKN 185 Query: 138 GCDLKIKGGQELKLVFPQVNVSP-------ENYIGFDFERFSLQPMDGPFLEENTNLAIS 190 +LKI QE + N P EN FD E+ N I Sbjct: 186 SPNLKIPLKQEDIIKKLIKNKIPYSLDSNKENSTWFDPEKIY-------KRGRNKEEIIK 238 Query: 191 ---YCF 193 YC Sbjct: 239 NYYYCK 244 >gi|158522869|ref|YP_001530739.1| molybdenum cofactor biosynthesis protein A [Desulfococcus oleovorans Hxd3] gi|158511695|gb|ABW68662.1| molybdenum cofactor biosynthesis protein A [Desulfococcus oleovorans Hxd3] Length = 330 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + C +C+ + ++L +IE G + R +TGGEPL++ D Sbjct: 23 DRCNLNCIYCNPSRYAKKLAHSDILTYEELLSIIEAGAGLGITKVR---ITGGEPLVRKD 79 >gi|328943967|ref|ZP_08241432.1| pyruvate formate-lyase activating enzyme [Atopobium vaginae DSM 15829] gi|327491936|gb|EGF23710.1| pyruvate formate-lyase activating enzyme [Atopobium vaginae DSM 15829] Length = 325 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 26/110 (23%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 A+F F+GC L +C FC +F Q G + +LA+++ E G Sbjct: 59 AIF--FTGCPL-----------RCAFC-QNFKISQEGFGLKITTARLAEIMLELQAQGAL 104 Query: 84 EGRYCVLTGGEPLL---QVDVPLIQALNKRGFEIAV--ETNGTIEPPQGI 128 PL V L A G ++ + T+G E P+ I Sbjct: 105 NINLVT-----PLHYAPHVREALFMA-KDAGLQLPIVCNTSG-YERPETI 147 >gi|283788523|ref|YP_003368388.1| putative oxygen-independent coproporphyrinogen III oxidase [Citrobacter rodentium ICC168] gi|282951977|emb|CBG91704.1| putative oxygen-independent coproporphyrinogen III oxidase [Citrobacter rodentium ICC168] Length = 378 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L+DL + +E + + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLAADVSFAQGREVKTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L EI +E N GT+E + +D+ Sbjct: 66 GGTPSL-LSGPAMQTLLDGVRARLTLAADAEITMEANPGTVEADRFVDY 113 >gi|225025138|ref|ZP_03714330.1| hypothetical protein EIKCOROL_02030 [Eikenella corrodens ATCC 23834] gi|224942099|gb|EEG23308.1| hypothetical protein EIKCOROL_02030 [Eikenella corrodens ATCC 23834] Length = 328 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 D + +C +C G +G G+ + L ++ + R LTGGEP L+ Sbjct: 24 DLCNYRCTYC-----LPDGYQGKGKPDELTLPEIETLVNVFAAAGTRKIRLTGGEPTLRR 78 Query: 100 DVPLIQALNKRG 111 D+ I A+ K Sbjct: 79 DLADIIAMCKAN 90 >gi|188533171|ref|YP_001906968.1| hypothetical protein ETA_10250 [Erwinia tasmaniensis Et1/99] gi|254807181|sp|B2VE98|RLMN_ERWT9 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|188028213|emb|CAO96071.1| Conserved hypothetical protein YfgB [Erwinia tasmaniensis Et1/99] Length = 389 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A +I + G++ V+ G Sbjct: 123 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGATKVIGQRPITNVVMMG 182 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + VP ++ L+ GF + + T+G + + D I V Sbjct: 183 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 233 >gi|198243140|ref|YP_002217079.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937656|gb|ACH74989.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 378 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L DL + +E + + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLDADVAWAQGREVKTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L EI +E N GT+E + ID+ Sbjct: 66 GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113 >gi|82776149|ref|YP_402496.1| molybdenum cofactor biosynthesis protein A [Shigella dysenteriae Sd197] gi|157160256|ref|YP_001457574.1| molybdenum cofactor biosynthesis protein A [Escherichia coli HS] gi|309786571|ref|ZP_07681194.1| molybdenum cofactor biosynthesis protein A [Shigella dysenteriae 1617] gi|123755782|sp|Q32I50|MOAA_SHIDS RecName: Full=Molybdenum cofactor biosynthesis protein A gi|167011813|sp|A7ZY37|MOAA_ECOHS RecName: Full=Molybdenum cofactor biosynthesis protein A gi|81240297|gb|ABB61007.1| molybdopterin biosynthesis, protein A [Shigella dysenteriae Sd197] gi|157065936|gb|ABV05191.1| molybdenum cofactor biosynthesis protein A [Escherichia coli HS] gi|308925634|gb|EFP71118.1| molybdenum cofactor biosynthesis protein A [Shigella dysenteriae 1617] Length = 329 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 78 RDFTDIIAAVRENDAIRQIAVTTNG 102 >gi|326383516|ref|ZP_08205202.1| alpha/beta hydrolase fold-3 domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326197600|gb|EGD54788.1| alpha/beta hydrolase fold-3 domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length = 359 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 49 FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108 FCDT R + DL + V+ G +PL + AL Sbjct: 256 FCDTYLESRDQLSDPRVSPLLADDL-------SGLAPAHVVVAGFDPLRDEGLEYADALE 308 Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139 K G + VE G++ I+ +SP+A Sbjct: 309 KAGVPVTVERAGSM-IHGFINMALLSPEAHA 338 >gi|325124369|gb|ADY83892.1| putative oxidase [Acinetobacter calcoaceticus PHEA-2] Length = 384 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 14/105 (13%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIE----EQWITGEKEGRY 87 L +C +CD + G L L+ + + + Sbjct: 10 PLSLYIHMPWCVRKCPYCDFNSHAVPDGALSAELEQTYLKALVADFETQVEMAQGRSIHS 69 Query: 88 CVLTGGEPLL-------QVDVPLIQALN-KRGFEIAVETN-GTIE 123 + GG P L + L L + G EI +E N GT+E Sbjct: 70 VFIGGGTPSLISAKGYAWLFEQLKSLLKFEDGCEITLEANPGTLE 114 >gi|300992093|ref|ZP_07179795.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 200-1] gi|300305422|gb|EFJ59942.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 200-1] gi|324011124|gb|EGB80343.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 60-1] Length = 352 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 45 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 100 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 101 RDFTDIIAAVRENDAIRQIAVTTNG 125 >gi|296386884|ref|ZP_06876383.1| coproporphyrinogen III oxidase [Pseudomonas aeruginosa PAb1] Length = 384 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 35/108 (32%), Gaps = 10/108 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLT 91 L +C +CD + VD LADL ++ + Sbjct: 11 PLALYVHIPWCVRKCPYCDFNSHAAGPELPEEAYVDALLADLEQDLHHVHGRRLGSIFFG 70 Query: 92 GGEPLLQVDVPLIQALN--------KRGFEIAVETN-GTIEPPQGIDW 130 GG P L L + L G EI +E N GT E + D+ Sbjct: 71 GGTPSLFSAKALGRLLEGVERRVGFADGIEITLEANPGTFEQVKFADY 118 >gi|294650282|ref|ZP_06727650.1| molybdopterin biosynthesis protein A [Acinetobacter haemolyticus ATCC 19194] gi|292823812|gb|EFF82647.1| molybdopterin biosynthesis protein A [Acinetobacter haemolyticus ATCC 19194] Length = 343 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 20/124 (16%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QV 99 DR + +C +C + + ++ L+ ++ +TGGEPL+ Q Sbjct: 31 DRCNFKCVYC----MPEHPEWMKKQDLLSFESLLVFCTYMVKQGIENIRITGGEPLMRQG 86 Query: 100 DVPLI---QALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155 V I Q L K G I++ TNG K LK G +L + Sbjct: 87 VVHFIRDLQKLKKIGLKRISMTTNGHYLA-----------KYADQLKAAGLDDLNISLDS 135 Query: 156 VNVS 159 ++ Sbjct: 136 IDAK 139 >gi|291549618|emb|CBL25880.1| Predicted Fe-S oxidoreductases [Ruminococcus torques L2-14] Length = 452 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 22/100 (22%) Query: 32 CNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGR 86 CN+ D SA C C G + ++ D + ++I++ G Sbjct: 107 CNVPWAILLDPTSACNLHCTGC------WAAEYGHKLSLSLDTIDNIIQQGKELGTYMY- 159 Query: 87 YCVLTGGEPLLQVDVPLIQALNKRGFEIAVE----TNGTI 122 + TGGEP+++ + L +R + E TNGT+ Sbjct: 160 --IYTGGEPMVRKKDLIT--LCERHPDC--EFLSFTNGTL 193 >gi|300024258|ref|YP_003756869.1| molybdenum cofactor biosynthesis protein A [Hyphomicrobium denitrificans ATCC 51888] gi|299526079|gb|ADJ24548.1| molybdenum cofactor biosynthesis protein A [Hyphomicrobium denitrificans ATCC 51888] Length = 349 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 10/87 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C ++ + K ++++L L G K+ R +TGGEPL++ + Sbjct: 38 DRCDFRCVYCMSEHMTFL-PKRDLLSLEELDVLCSAFVRRGVKKLR---ITGGEPLVRKN 93 Query: 101 VP-LIQAL---NKRG--FEIAVETNGT 121 + L +AL + G E+ + TNG+ Sbjct: 94 IMWLFEALGRHLESGDLKELTLTTNGS 120 >gi|255073297|ref|XP_002500323.1| predicted protein [Micromonas sp. RCC299] gi|226515585|gb|ACO61581.1| predicted protein [Micromonas sp. RCC299] Length = 272 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 43/126 (34%), Gaps = 26/126 (20%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GC S +C FC D+ G V Q+ IE G Sbjct: 47 AGC-----------SKRCVFCCNPDS----WSPAGGTLMTVAQVFRQIETSIPYYLSSGG 91 Query: 87 YCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGT------IEPPQGIDWICVSPKAG 138 L+GGE LLQ L +RG A++T T + +D + + K+ Sbjct: 92 GITLSGGECLLQPRFSKQLCVEARRRGLTAALDTAATGTERDWDQILPHVDLVLLCVKSS 151 Query: 139 CDLKIK 144 K + Sbjct: 152 DPRKHQ 157 >gi|167990369|ref|ZP_02571469.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331198|gb|EDZ17962.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248235|emb|CBG26072.1| possible oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995269|gb|ACY90154.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159659|emb|CBW19178.1| possible oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323131460|gb|ADX18890.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 378 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L DL + +E + + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLDADVAWAQGREVKTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L EI +E N GT+E + ID+ Sbjct: 66 GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113 >gi|167552004|ref|ZP_02345757.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323333|gb|EDZ11172.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 378 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L DL + +E + + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLDADVAWAQGREVKTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L EI +E N GT+E + ID+ Sbjct: 66 GGTPSL-LSGPAMQTLLDGVRTRLNLAADAEITMEANPGTVEADRFIDY 113 >gi|149923343|ref|ZP_01911751.1| molybdenum cofactor biosynthesis protein A [Plesiocystis pacifica SIR-1] gi|149815823|gb|EDM75345.1| molybdenum cofactor biosynthesis protein A [Plesiocystis pacifica SIR-1] Length = 369 Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 13/90 (14%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99 DR S +C +C + +++++A + E G + R LTGGEP L+ Sbjct: 49 DRCSMRCTYCMPPEGIEHVARSEVLSLEEVALVAEAFARWGVERVR---LTGGEPTLRRG 105 Query: 100 DVPLIQALN-----KRG----FEIAVETNG 120 L++ L +G E+A+ TNG Sbjct: 106 LAALVERLAQTPVGAQGEGATLEVAMTTNG 135 >gi|326915316|ref|XP_003203965.1| PREDICTED: LOW QUALITY PROTEIN: molybdenum cofactor biosynthesis protein 1-like, partial [Meleagris gallopavo] Length = 651 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N ++ + +C++C G+Q T Q ++I + ++ LTG Sbjct: 31 NYLRISLTEKCNLRCQYC-MPEEGVQLTPKSELLTAQ--EIITLAGLFVKEGVEKIRLTG 87 Query: 93 GEPLLQVD-VPLIQAL-NKRGFE-IAVETNG 120 GEPL++ D V ++ L G + IAV TNG Sbjct: 88 GEPLIRPDVVDIVGQLYKLEGLKTIAVTTNG 118 >gi|310828985|ref|YP_003961342.1| Predicted Fe-S oxidoreductase [Eubacterium limosum KIST612] gi|308740719|gb|ADO38379.1| Predicted Fe-S oxidoreductase [Eubacterium limosum KIST612] Length = 454 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 22/100 (22%) Query: 32 CNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRYNVD--QLADLIEEQWITGEKEGR 86 CN+ D SA C C G + ++D + ++ E G Sbjct: 107 CNVPWAILLDPTSACNLHCTGC------WAAEYGHKQSLDLETIDRIVREGKALGTYMY- 159 Query: 87 YCVLTGGEPLLQVDVPLIQALNKRGFEIAVE----TNGTI 122 + TGGEPL++ + L +R + E TNGT+ Sbjct: 160 --IYTGGEPLVRKKDLIT--LCERHPDC--EFLSFTNGTL 193 >gi|331656798|ref|ZP_08357760.1| molybdenum cofactor biosynthesis protein A [Escherichia coli TA206] gi|331055046|gb|EGI27055.1| molybdenum cofactor biosynthesis protein A [Escherichia coli TA206] Length = 329 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 78 RDFTDIIAAVRENDAIRQIAVTTNG 102 >gi|298384683|ref|ZP_06994243.1| radical SAM domain-containing protein [Bacteroides sp. 1_1_14] gi|298262962|gb|EFI05826.1| radical SAM domain-containing protein [Bacteroides sp. 1_1_14] Length = 370 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 67/178 (37%), Gaps = 23/178 (12%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTK-----GGRYNVDQLADLIEEQWITGEKEGRYCVL 90 + +C +C +V +G + RY+ Q+A+ + + + G C + Sbjct: 10 CLIPITVCNMKCHYC---YVVQRGYRTMKMAEMRYSPKQIAEGLSHKRLNGAAYISICGI 66 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGT----------IEPPQGIDWICVSPKAGC 139 GE + ++P + L K G I + TNGT + P + + + S Sbjct: 67 --GETTMVKELPEICLELLKEGHYINITTNGTFIRFFDQFLELIPSEMLARVNFSFSFHY 124 Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197 L+++ + + F +N + + F+L P LE+ + + P+ Sbjct: 125 -LELERMKAFEKFFANINRVKDAGCSILVQ-FNLCDEYEPHLEDIKRMCLENVGALPQ 180 >gi|294497200|ref|YP_003560900.1| hypothetical protein BMQ_0384 [Bacillus megaterium QM B1551] gi|294347137|gb|ADE67466.1| conserved hypothetical protein [Bacillus megaterium QM B1551] Length = 372 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q +D + ++E R +TGGEP++ + Sbjct: 42 RCEHCAVGYT-LQPKDPNALPLDLILKRLDEI-----PTLRALSITGGEPMMSLSSVKNY 95 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 VPL++ ++RG + +N T++ Sbjct: 96 VVPLLKYAHERGVRTQINSNLTLDL 120 >gi|293409159|ref|ZP_06652735.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B354] gi|291469627|gb|EFF12111.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B354] Length = 329 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 78 RDFTDIIAAVRENDAIRQIAVTTNG 102 >gi|256023623|ref|ZP_05437488.1| molybdenum cofactor biosynthesis protein A [Escherichia sp. 4_1_40B] gi|307137405|ref|ZP_07496761.1| molybdenum cofactor biosynthesis protein A [Escherichia coli H736] gi|309701057|emb|CBJ00355.1| molybdenum cofactor biosynthesis protein A [Escherichia coli ETEC H10407] gi|315619780|gb|EFV00299.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 3431] gi|323938136|gb|EGB34396.1| molybdenum coprotein biosynthesis protein A [Escherichia coli E1520] gi|323942654|gb|EGB38819.1| molybdenum coproteinbiosynthesis protein A [Escherichia coli E482] gi|323971946|gb|EGB67167.1| molybdenum coproteinbiosynthesis protein A [Escherichia coli TA007] Length = 329 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 78 RDFTDIIAAVRENDAIRQIAVTTNG 102 >gi|218704159|ref|YP_002411678.1| molybdenum cofactor biosynthesis protein A [Escherichia coli UMN026] gi|293404082|ref|ZP_06648076.1| molybdenum cofactor biosynthesis protein A [Escherichia coli FVEC1412] gi|298379863|ref|ZP_06989468.1| molybdenum cofactor biosynthesis protein A [Escherichia coli FVEC1302] gi|331662136|ref|ZP_08363059.1| molybdenum cofactor biosynthesis protein A [Escherichia coli TA143] gi|226704853|sp|B7NA81|MOAA_ECOLU RecName: Full=Molybdenum cofactor biosynthesis protein A gi|218431256|emb|CAR12133.1| molybdopterin biosynthesis protein A [Escherichia coli UMN026] gi|291428668|gb|EFF01693.1| molybdenum cofactor biosynthesis protein A [Escherichia coli FVEC1412] gi|298279561|gb|EFI21069.1| molybdenum cofactor biosynthesis protein A [Escherichia coli FVEC1302] gi|331060558|gb|EGI32522.1| molybdenum cofactor biosynthesis protein A [Escherichia coli TA143] Length = 329 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 78 RDFTDIIAAVRENDAIRQIAVTTNG 102 >gi|218549655|ref|YP_002383446.1| molybdenum cofactor biosynthesis protein A [Escherichia fergusonii ATCC 35469] gi|226704850|sp|B7LJY1|MOAA_ESCF3 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|218357196|emb|CAQ89831.1| molybdopterin biosynthesis protein A [Escherichia fergusonii ATCC 35469] gi|325498048|gb|EGC95907.1| molybdenum cofactor biosynthesis protein A [Escherichia fergusonii ECD227] Length = 329 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 78 RDFTDIIAAVRENDAIRQIAVTTNG 102 >gi|110640985|ref|YP_668713.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 536] gi|110342577|gb|ABG68814.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 536] Length = 340 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 33 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 88 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 89 RDFTDIIAAVRENDAIRQIAVTTNG 113 >gi|74311325|ref|YP_309744.1| molybdenum cofactor biosynthesis protein A [Shigella sonnei Ss046] gi|331667144|ref|ZP_08368009.1| molybdenum cofactor biosynthesis protein A [Escherichia coli TA271] gi|123759643|sp|Q3Z403|MOAA_SHISS RecName: Full=Molybdenum cofactor biosynthesis protein A gi|73854802|gb|AAZ87509.1| molybdopterin biosynthesis, protein A [Shigella sonnei Ss046] gi|323165698|gb|EFZ51484.1| molybdenum cofactor biosynthesis protein A [Shigella sonnei 53G] gi|331065500|gb|EGI37393.1| molybdenum cofactor biosynthesis protein A [Escherichia coli TA271] Length = 329 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 78 RDFTDIIAAVRENDAIRQIAVTTNG 102 >gi|187733362|ref|YP_001881033.1| molybdenum cofactor biosynthesis protein A [Shigella boydii CDC 3083-94] gi|226707387|sp|B2TVE9|MOAA_SHIB3 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|187430354|gb|ACD09628.1| molybdenum cofactor biosynthesis protein A [Shigella boydii CDC 3083-94] Length = 329 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 78 RDFTDIIAAVRENDAIRQIAVTTNG 102 >gi|15800532|ref|NP_286544.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 EDL933] gi|15830113|ref|NP_308886.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. Sakai] gi|82543228|ref|YP_407175.1| molybdenum cofactor biosynthesis protein A [Shigella boydii Sb227] gi|157155416|ref|YP_001461969.1| molybdenum cofactor biosynthesis protein A [Escherichia coli E24377A] gi|168751999|ref|ZP_02777021.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC4113] gi|168757124|ref|ZP_02782131.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC4401] gi|168764316|ref|ZP_02789323.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC4501] gi|168767281|ref|ZP_02792288.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC4486] gi|168777240|ref|ZP_02802247.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC4196] gi|168779324|ref|ZP_02804331.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC4076] gi|168786994|ref|ZP_02812001.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC869] gi|168799946|ref|ZP_02824953.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC508] gi|170682341|ref|YP_001742884.1| molybdenum cofactor biosynthesis protein A [Escherichia coli SMS-3-5] gi|191169283|ref|ZP_03031033.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B7A] gi|193064470|ref|ZP_03045551.1| molybdenum cofactor biosynthesis protein A [Escherichia coli E22] gi|193069390|ref|ZP_03050345.1| molybdenum cofactor biosynthesis protein A [Escherichia coli E110019] gi|194428160|ref|ZP_03060703.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B171] gi|194433163|ref|ZP_03065445.1| molybdenum cofactor biosynthesis protein A [Shigella dysenteriae 1012] gi|194438411|ref|ZP_03070501.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 101-1] gi|195936821|ref|ZP_03082203.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC4024] gi|208807108|ref|ZP_03249445.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC4206] gi|208815182|ref|ZP_03256361.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC4045] gi|208822050|ref|ZP_03262369.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC4042] gi|209398143|ref|YP_002269450.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC4115] gi|209918026|ref|YP_002292110.1| molybdenum cofactor biosynthesis protein A [Escherichia coli SE11] gi|217324411|ref|ZP_03440495.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. TW14588] gi|218553364|ref|YP_002386277.1| molybdenum cofactor biosynthesis protein A [Escherichia coli IAI1] gi|218688567|ref|YP_002396779.1| molybdenum cofactor biosynthesis protein A [Escherichia coli ED1a] gi|218694254|ref|YP_002401921.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 55989] gi|253774216|ref|YP_003037047.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160858|ref|YP_003043966.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B str. REL606] gi|254791975|ref|YP_003076812.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. TW14359] gi|256021149|ref|ZP_05435014.1| molybdenum cofactor biosynthesis protein A [Shigella sp. D9] gi|260843023|ref|YP_003220801.1| molybdopterin biosynthesis protein A [Escherichia coli O103:H2 str. 12009] gi|260854072|ref|YP_003227963.1| molybdopterin biosynthesis protein A [Escherichia coli O26:H11 str. 11368] gi|260866948|ref|YP_003233350.1| molybdopterin biosynthesis protein A [Escherichia coli O111:H- str. 11128] gi|261225428|ref|ZP_05939709.1| molybdopterin biosynthesis protein A [Escherichia coli O157:H7 str. FRIK2000] gi|261258603|ref|ZP_05951136.1| molybdopterin biosynthesis protein A [Escherichia coli O157:H7 str. FRIK966] gi|291281778|ref|YP_003498596.1| Molybdenum cofactor biosynthesis protein A [Escherichia coli O55:H7 str. CB9615] gi|293414061|ref|ZP_06656710.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B185] gi|293433042|ref|ZP_06661470.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B088] gi|306812817|ref|ZP_07447010.1| molybdenum cofactor biosynthesis protein A [Escherichia coli NC101] gi|307313809|ref|ZP_07593426.1| molybdenum cofactor biosynthesis protein A [Escherichia coli W] gi|54037808|sp|P65383|MOAA_ECO57 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|54041468|sp|P65382|MOAA_ECOL6 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|123755636|sp|Q324B1|MOAA_SHIBS RecName: Full=Molybdenum cofactor biosynthesis protein A gi|167011812|sp|A7ZJJ0|MOAA_ECO24 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|226704817|sp|B5YRM0|MOAA_ECO5E RecName: Full=Molybdenum cofactor biosynthesis protein A gi|226704851|sp|B1LM72|MOAA_ECOSM RecName: Full=Molybdenum cofactor biosynthesis protein A gi|226704852|sp|B6I7T6|MOAA_ECOSE RecName: Full=Molybdenum cofactor biosynthesis protein A gi|226704855|sp|B7M753|MOAA_ECO8A RecName: Full=Molybdenum cofactor biosynthesis protein A gi|254811543|sp|B7LC63|MOAA_ECO55 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|254811544|sp|B7MQN5|MOAA_ECO81 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|12513770|gb|AAG55152.1|AE005259_3 molybdopterin biosynthesis, protein A [Escherichia coli O157:H7 str. EDL933] gi|13360318|dbj|BAB34282.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. Sakai] gi|81244639|gb|ABB65347.1| molybdopterin biosynthesis, protein A [Shigella boydii Sb227] gi|157077446|gb|ABV17154.1| molybdenum cofactor biosynthesis protein A [Escherichia coli E24377A] gi|170520059|gb|ACB18237.1| molybdenum cofactor biosynthesis protein A [Escherichia coli SMS-3-5] gi|187767501|gb|EDU31345.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC4196] gi|188014053|gb|EDU52175.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC4113] gi|189002733|gb|EDU71719.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC4076] gi|189355857|gb|EDU74276.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC4401] gi|189363390|gb|EDU81809.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC4486] gi|189365661|gb|EDU84077.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC4501] gi|189373150|gb|EDU91566.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC869] gi|189377745|gb|EDU96161.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC508] gi|190900672|gb|EDV60471.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B7A] gi|192928932|gb|EDV82545.1| molybdenum cofactor biosynthesis protein A [Escherichia coli E22] gi|192957343|gb|EDV87791.1| molybdenum cofactor biosynthesis protein A [Escherichia coli E110019] gi|194413720|gb|EDX29999.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B171] gi|194418660|gb|EDX34747.1| molybdenum cofactor biosynthesis protein A [Shigella dysenteriae 1012] gi|194422635|gb|EDX38632.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 101-1] gi|208726909|gb|EDZ76510.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC4206] gi|208731830|gb|EDZ80518.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC4045] gi|208737535|gb|EDZ85218.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC4042] gi|209159543|gb|ACI36976.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. EC4115] gi|209776068|gb|ACI86346.1| molybdenum cofactor biosynthesis protein A [Escherichia coli] gi|209776070|gb|ACI86347.1| molybdenum cofactor biosynthesis protein A [Escherichia coli] gi|209776072|gb|ACI86348.1| molybdenum cofactor biosynthesis protein A [Escherichia coli] gi|209776074|gb|ACI86349.1| molybdenum cofactor biosynthesis protein A [Escherichia coli] gi|209776076|gb|ACI86350.1| molybdenum cofactor biosynthesis protein A [Escherichia coli] gi|209911285|dbj|BAG76359.1| molybdopterin biosynthesis protein A [Escherichia coli SE11] gi|217320632|gb|EEC29056.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. TW14588] gi|218350986|emb|CAU96690.1| molybdopterin biosynthesis protein A [Escherichia coli 55989] gi|218360132|emb|CAQ97681.1| molybdopterin biosynthesis protein A [Escherichia coli IAI1] gi|218426131|emb|CAR06951.1| molybdopterin biosynthesis protein A [Escherichia coli ED1a] gi|222032512|emb|CAP75251.1| Molybdenum cofactor biosynthesis protein A [Escherichia coli LF82] gi|242376573|emb|CAQ31282.1| molybdopterin biosynthesis protein A [Escherichia coli BL21(DE3)] gi|253325260|gb|ACT29862.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972759|gb|ACT38430.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B str. REL606] gi|253976979|gb|ACT42649.1| molybdenum cofactor biosynthesis protein A [Escherichia coli BL21(DE3)] gi|254591375|gb|ACT70736.1| molybdopterin biosynthesis protein A [Escherichia coli O157:H7 str. TW14359] gi|257752721|dbj|BAI24223.1| molybdopterin biosynthesis protein A [Escherichia coli O26:H11 str. 11368] gi|257758170|dbj|BAI29667.1| molybdopterin biosynthesis protein A [Escherichia coli O103:H2 str. 12009] gi|257763304|dbj|BAI34799.1| molybdopterin biosynthesis protein A [Escherichia coli O111:H- str. 11128] gi|284920630|emb|CBG33692.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 042] gi|290761651|gb|ADD55612.1| Molybdenum cofactor biosynthesis protein A [Escherichia coli O55:H7 str. CB9615] gi|291323861|gb|EFE63283.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B088] gi|291434119|gb|EFF07092.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B185] gi|305853580|gb|EFM54019.1| molybdenum cofactor biosynthesis protein A [Escherichia coli NC101] gi|306906449|gb|EFN36963.1| molybdenum cofactor biosynthesis protein A [Escherichia coli W] gi|312945299|gb|ADR26126.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O83:H1 str. NRG 857C] gi|315060017|gb|ADT74344.1| molybdopterin biosynthesis protein A [Escherichia coli W] gi|320175202|gb|EFW50311.1| Molybdenum cofactor biosynthesis protein MoaA [Shigella dysenteriae CDC 74-1112] gi|320178492|gb|EFW53457.1| Molybdenum cofactor biosynthesis protein MoaA [Shigella boydii ATCC 9905] gi|320183270|gb|EFW58125.1| Molybdenum cofactor biosynthesis protein MoaA [Shigella flexneri CDC 796-83] gi|320192744|gb|EFW67385.1| Molybdenum cofactor biosynthesis protein MoaA [Escherichia coli O157:H7 str. EC1212] gi|320196724|gb|EFW71347.1| Molybdenum cofactor biosynthesis protein MoaA [Escherichia coli WV_060327] gi|320198970|gb|EFW73567.1| Molybdenum cofactor biosynthesis protein MoaA [Escherichia coli EC4100B] gi|320637643|gb|EFX07435.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. G5101] gi|320642769|gb|EFX11970.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H- str. 493-89] gi|320648225|gb|EFX16880.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H- str. H 2687] gi|320654062|gb|EFX22130.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659685|gb|EFX27241.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O55:H7 str. USDA 5905] gi|320664155|gb|EFX31306.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O157:H7 str. LSU-61] gi|323155698|gb|EFZ41869.1| molybdenum cofactor biosynthesis protein A [Escherichia coli EPECa14] gi|323159710|gb|EFZ45688.1| molybdenum cofactor biosynthesis protein A [Escherichia coli E128010] gi|323172103|gb|EFZ57742.1| molybdenum cofactor biosynthesis protein A [Escherichia coli LT-68] gi|323175601|gb|EFZ61196.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 1180] gi|323185064|gb|EFZ70430.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 1357] gi|323190907|gb|EFZ76174.1| molybdenum cofactor biosynthesis protein A [Escherichia coli RN587/1] gi|323379424|gb|ADX51692.1| molybdenum cofactor biosynthesis protein A [Escherichia coli KO11] gi|326338333|gb|EGD62162.1| Molybdenum cofactor biosynthesis protein MoaA [Escherichia coli O157:H7 str. 1125] gi|326346311|gb|EGD70049.1| Molybdenum cofactor biosynthesis protein MoaA [Escherichia coli O157:H7 str. 1044] gi|327253565|gb|EGE65194.1| molybdenum cofactor biosynthesis protein A [Escherichia coli STEC_7v] gi|330910526|gb|EGH39036.1| molybdenum cofactor biosynthesis protein MoaA [Escherichia coli AA86] gi|332089009|gb|EGI94121.1| molybdenum cofactor biosynthesis protein A [Shigella boydii 5216-82] gi|332091130|gb|EGI96220.1| molybdenum cofactor biosynthesis protein A [Shigella dysenteriae 155-74] gi|332097535|gb|EGJ02515.1| molybdenum cofactor biosynthesis protein A [Shigella boydii 3594-74] Length = 329 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 78 RDFTDIIAAVRENDAIRQIAVTTNG 102 >gi|257066587|ref|YP_003152843.1| Radical SAM domain-containing protein [Anaerococcus prevotii DSM 20548] gi|256798467|gb|ACV29122.1| Radical SAM domain protein [Anaerococcus prevotii DSM 20548] Length = 446 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 10/101 (9%) Query: 32 CNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CN+ D +A +C C + G K + D++ D+I + G Sbjct: 104 CNVPWTILLDPTTACNLKCTGC---WAAEYG-KSLNLSYDEIDDIIRQGKDMGIYFY--- 156 Query: 89 VLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGID 129 + TGGEPL++ L A E + TN T+ +D Sbjct: 157 IYTGGEPLVRKKDVLKIAEKHNDCEFLIFTNSTLIDDDFVD 197 >gi|190892073|ref|YP_001978615.1| molybdenum cofactor biosynthesis protein [Rhizobium etli CIAT 652] gi|226707376|sp|B3PQ08|MOAA_RHIE6 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|190697352|gb|ACE91437.1| molybdenum cofactor biosynthesis protein [Rhizobium etli CIAT 652] Length = 348 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C K +++L L G ++ R LTGGEPL++ + Sbjct: 38 DRCDFRCTYC-MAENMTFLPKKDLLTLEELDRLCSAFIAKGVRKIR---LTGGEPLVRKN 93 Query: 101 VP-LIQALNK---RGF-EIAVETNGT 121 + L++ L K G E+ + TNG+ Sbjct: 94 IMYLVRQLGKKIGAGLDELTLTTNGS 119 >gi|119094147|gb|ABL60977.1| molybdenum cofactor biosynthesis protein A [uncultured marine bacterium HF10_19P19] Length = 298 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 14/89 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C K +++L + G + R LTGGEPL++ + Sbjct: 41 DRCDFRCVYC-MAEEMTFLPKKDLLTLEELEQVCRTFMSMGTRRIR---LTGGEPLVRRN 96 Query: 101 VPLIQALNKRGFEI--------AVETNGT 121 + IQ + G E+ + TNG+ Sbjct: 97 I--IQLIRNLGAEVKSGQLDELTITTNGS 123 >gi|153006920|ref|YP_001381245.1| radical SAM domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152030493|gb|ABS28261.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5] Length = 336 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Query: 75 EEQWITGEKEGRYCV-LTGGEPLLQVDVPLIQA-LNKRGFEIAVETN 119 E+ W ++ G V + GGEPLL ++ + L +RG + + TN Sbjct: 62 EQCWAASDECGAPVVSIAGGEPLLHPEIARVARGLVERGRFVYLCTN 108 >gi|329732101|gb|EGG68455.1| conserved domain protein [Staphylococcus epidermidis VCU144] Length = 122 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 30/112 (26%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C +V ++D+ +LI+++ +++ Sbjct: 11 CNL-----------RCKYC---YVNKNAKYLQLDDIDKAFELIKQKISDDDEKIINVNFH 56 Query: 92 GGEPLLQVDVPLI-------QALNKR-----GFEIAVETNGTIEPPQGIDWI 131 GGEP L + P+I L ++ + I TNGT ID++ Sbjct: 57 GGEPTL--NFPVIYKVVNCFSVLKEKYDISLNYYIT--TNGTAISNDAIDFL 104 >gi|313226405|emb|CBY21549.1| unnamed protein product [Oikopleura dioica] Length = 347 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 18/94 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR+C G++ T + Q + + LT Sbjct: 31 CNL-----------RCRYC-MPIEGVKLTPSDQLLSAQELYRFSSLLVKNAGVQK-IRLT 77 Query: 92 GGEPL----LQVDVPLIQALNKRG-FEIAVETNG 120 GGEPL +Q + + +L G +I + TNG Sbjct: 78 GGEPLVRREIQEIISDLNSLRDDGVKQIGITTNG 111 >gi|242278715|ref|YP_002990844.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638] gi|242121609|gb|ACS79305.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638] Length = 394 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 8/92 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 + R + +C C + + + + ++I++ + + Sbjct: 40 PVVVWNMTRRCNLKCVHC---YAQAVDPDGKDEISTSKAKEIIDDL---AAFGAPVMLFS 93 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPL++ D+ L +G + TNGT+ Sbjct: 94 GGEPLVRKDLVELASYATGKGMRAVISTNGTL 125 >gi|213421342|ref|ZP_03354408.1| hypothetical protein Salmonentericaenterica_27889 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 317 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 181 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + VP ++ L+ GF + + T+G + + D I V Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232 >gi|154245334|ref|YP_001416292.1| molybdenum cofactor biosynthesis protein A [Xanthobacter autotrophicus Py2] gi|154159419|gb|ABS66635.1| molybdenum cofactor biosynthesis protein A [Xanthobacter autotrophicus Py2] Length = 351 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 55/164 (33%), Gaps = 20/164 (12%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C K ++++L L + G ++ R LTGGEPL++ D Sbjct: 40 DRCDFRCVYC-MAEHMTFLPKQDLLSLEELDRLCSAFVLRGVRKLR---LTGGEPLVRRD 95 Query: 101 VPLIQALNKRGFEI-AVE-----TNGTIEPPQGIDWICVSPK---AGCDL-------KIK 144 V + R E +E TNG+ D K D I Sbjct: 96 VMTLFRSLSRHMETGQLEELTLTTNGSQLSRHAADLAACGVKRINVSIDTLDVAKFRAIT 155 Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 EL V V + + +L+ ++ + A Sbjct: 156 RWGELSKVLEGVKAASAAGLKVKINAVALKDVNEHEIASMMEWA 199 >gi|148548997|ref|YP_001269099.1| molybdenum cofactor synthesis domain-containing protein [Pseudomonas putida F1] gi|148513055|gb|ABQ79915.1| molybdenum cofactor synthesis domain protein [Pseudomonas putida F1] Length = 322 Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 23/164 (14%) Query: 46 QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102 C +C D + + D LA + E +TGGEPL+ Sbjct: 24 ACTYCVPDGKRLV---AAQDELSADALARGVAYLIEAAGIERLR--ITGGEPLVSPRLDA 78 Query: 103 LIQALNKRGF-EIAVETNG---TIEPPQ----GIDWICVSPKAGCDLKIK---GGQELKL 151 + A+ K ++++ TNG + PQ GI + VS L + G +L Sbjct: 79 FLAAVAKLDLDDVSLTTNGQLLARKLPQLQAAGIRRLNVSLDTLDPLAFRQIARGGDLGT 138 Query: 152 VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 V + + + + ++ PM G L++ L + YC Sbjct: 139 VLDAMEQARAVGMRI---KVNMVPMRGKNLDQVLPL-LDYCLAR 178 >gi|309798880|ref|ZP_07693141.1| organic radical activating enzyme [Streptococcus infantis SK1302] gi|308117529|gb|EFO54944.1| organic radical activating enzyme [Streptococcus infantis SK1302] Length = 54 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%) Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFC 27 + EIF T QGEG G+ +FC Sbjct: 9 LPVLEIFGPTFQGEGRAIGQKTMFC 33 >gi|301024505|ref|ZP_07188181.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 196-1] gi|299880358|gb|EFI88569.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS 196-1] Length = 329 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 78 RDFTDIIAAVRENDAIRQIAVTTNG 102 >gi|218557686|ref|YP_002390599.1| molybdenum cofactor biosynthesis protein A [Escherichia coli S88] gi|226704816|sp|B7MGN9|MOAA_ECO45 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|218364455|emb|CAR02137.1| molybdopterin biosynthesis protein A [Escherichia coli S88] gi|294489623|gb|ADE88379.1| molybdenum cofactor biosynthesis protein A [Escherichia coli IHE3034] gi|307627809|gb|ADN72113.1| molybdenum cofactor biosynthesis protein A [Escherichia coli UM146] gi|323953556|gb|EGB49422.1| molybdenum coproteinbiosynthesis protein A [Escherichia coli H252] gi|323958070|gb|EGB53779.1| molybdenum coproteinbiosynthesis protein A [Escherichia coli H263] Length = 329 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 78 RDFTDIIAAVRENDAIRQIAVTTNG 102 >gi|30062266|ref|NP_836437.1| molybdenum cofactor biosynthesis protein A [Shigella flexneri 2a str. 2457T] gi|56479727|ref|NP_706659.2| molybdenum cofactor biosynthesis protein A [Shigella flexneri 2a str. 301] gi|81724697|sp|Q83S40|MOAA_SHIFL RecName: Full=Molybdenum cofactor biosynthesis protein A gi|30040511|gb|AAP16243.1| molybdopterin biosynthesis protein A [Shigella flexneri 2a str. 2457T] gi|56383278|gb|AAN42366.2| molybdopterin biosynthesis protein A [Shigella flexneri 2a str. 301] gi|313650321|gb|EFS14733.1| molybdenum cofactor biosynthesis protein A [Shigella flexneri 2a str. 2457T] Length = 329 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 78 RDFTDIIAAVRENDAIRQIAVTTNG 102 >gi|89896265|ref|YP_519752.1| hypothetical protein DSY3519 [Desulfitobacterium hafniense Y51] gi|89335713|dbj|BAE85308.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 441 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 18/95 (18%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL +C C F+ + + L Sbjct: 106 GCNL-----------RCPVC---FMAANDFHPDPNPSLEALGEKYRYILRHTNSDTSIQL 151 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVE--TNGTI 122 TGGEP + D+ +I+ + GF+ A+E TNG + Sbjct: 152 TGGEPTTREDLADIIRLGREIGFQ-AIEVNTNGVV 185 >gi|88799468|ref|ZP_01115045.1| pyruvate formate-lyase 1 activating enzyme [Reinekea sp. MED297] gi|88777778|gb|EAR08976.1| pyruvate formate-lyase 1 activating enzyme [Reinekea sp. MED297] Length = 261 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 50/133 (37%), Gaps = 32/133 (24%) Query: 8 EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63 E F T+ G G VF GC +C++C DT G Sbjct: 26 ESFGTVDGPGTRFV----VF--LQGC-----------LFRCKYCHNRDT----WDLDGGD 64 Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG- 120 Y+V + + I + G +TGGEP+LQ L + L + G ++TNG Sbjct: 65 LYSVTDMVEKILPFARFMDASGGGVTVTGGEPVLQAPYVALLFEKLQQHGIHTCLDTNGY 124 Query: 121 ----TIEPPQGID 129 + E Q ID Sbjct: 125 VGVYSDEVHQMID 137 >gi|134295023|ref|YP_001118758.1| coproporphyrinogen III oxidase [Burkholderia vietnamiensis G4] gi|134138180|gb|ABO53923.1| putative oxygen-independent coproporphyrinogen III oxidase [Burkholderia vietnamiensis G4] Length = 404 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 17/106 (16%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87 L +C +CD KG R+ + D + ++ Sbjct: 28 PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPETEYLDALRADLEQALPLVWGRQVHT 84 Query: 88 CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124 + GG P L L + L EI +E N GT E Sbjct: 85 VFIGGGTPSLLSAAGLDRLLSDVRALLPLDADAEITLEANPGTFEA 130 >gi|260551661|ref|ZP_05825735.1| molybdopterin biosynthesis protein [Acinetobacter sp. RUH2624] gi|260405404|gb|EEW98898.1| molybdopterin biosynthesis protein [Acinetobacter sp. RUH2624] Length = 346 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 16/106 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + + ++ L + ++ +TGGEPL++ Sbjct: 33 DRCNFKCVYC----MPEHPEWLNKQDLLSFEALFQFCHFMVQQGIESIRITGGEPLMRQG 88 Query: 101 VPL----IQALNKRGF-EIAVETNGTIEP-------PQGIDWICVS 134 + +QAL G I++ TNG G+D + +S Sbjct: 89 IVHFVRDLQALKALGLKRISMTTNGHYLAKYAKQLKDAGLDDLNIS 134 >gi|86742059|ref|YP_482459.1| radical SAM family protein [Frankia sp. CcI3] gi|86568921|gb|ABD12730.1| Radical SAM [Frankia sp. CcI3] Length = 640 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKR 110 +Q + R D LA IE R+ L GGE +L + L +A Sbjct: 76 AHCLVQSSPHRRERFD-LATAIEILRTAARFGRRFLDLGGGEIMLHPEDTCALARAATDL 134 Query: 111 GFEIAVETNG 120 G+ +++ TNG Sbjct: 135 GYYVSLNTNG 144 >gi|85715396|ref|ZP_01046378.1| molybdenum cofactor biosynthesis protein A [Nitrobacter sp. Nb-311A] gi|85697817|gb|EAQ35692.1| molybdenum cofactor biosynthesis protein A [Nitrobacter sp. Nb-311A] Length = 343 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ K +++L L G ++ R LTGGEPL+ Sbjct: 33 DRCDLRCFYCMSEDMTFL----PKADLLTLEELDRLCSAFIAKGVRKLR---LTGGEPLV 85 Query: 98 QVDV-PLIQAL---NKRG--FEIAVETNGT 121 + +V LI++L + G E+ + TNG+ Sbjct: 86 RRNVMSLIRSLSRHLESGALKELTLTTNGS 115 >gi|290511358|ref|ZP_06550727.1| oxygen-independent coproporphyrinogen III oxidase [Klebsiella sp. 1_1_55] gi|289776351|gb|EFD84350.1| oxygen-independent coproporphyrinogen III oxidase [Klebsiella sp. 1_1_55] Length = 378 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L DL + +E + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLQADAQYAQGREIGTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L G EI +E N GT+E + +D+ Sbjct: 66 GGTPSL-LSGPAMQTLLDGVRACLPLAAGAEITMEANPGTVEADRFVDY 113 >gi|289662150|ref|ZP_06483731.1| coproporphyrinogen III oxidase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 385 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 31/99 (31%), Gaps = 10/99 (10%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91 L +C +CD + +G VD L ++ + V Sbjct: 8 PLSLYVHLPWCVRKCPYCDFNSHAAKGALPFEDYVDALIRDLDADLPLAWGRVVHSVFFG 67 Query: 92 GGEPLLQVDVPLIQALNKR--------GFEIAVETN-GT 121 GG P L + + L EI +ETN GT Sbjct: 68 GGTPSLFPPEAIDRFLQAAAARLRFAPNLEITLETNPGT 106 >gi|282896814|ref|ZP_06304820.1| Molybdenum cofactor biosynthesis protein A [Raphidiopsis brookii D9] gi|281198223|gb|EFA73113.1| Molybdenum cofactor biosynthesis protein A [Raphidiopsis brookii D9] Length = 328 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 9/71 (12%) Query: 33 NLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYC 88 N DR + +C +C DT+ I K D+L LI++ G R Sbjct: 5 NYLRISLIDRCNFRCLYCMPNDTELNHI--LKKQLLTNDELLTLIQDVFIPVGFNRFR-- 60 Query: 89 VLTGGEPLLQV 99 LTGGEPLL+ Sbjct: 61 -LTGGEPLLRP 70 >gi|220907458|ref|YP_002482769.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Cyanothece sp. PCC 7425] gi|219864069|gb|ACL44408.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Cyanothece sp. PCC 7425] Length = 208 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 26/96 (27%), Gaps = 20/96 (20%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 G AV GC +C C + +ADL I Sbjct: 35 GCRAV-IWVQGC-----------LRECPGC----FNPASWVFEENQLVAIADL--AAKIL 76 Query: 81 GEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114 +GGEP Q L + L + G + Sbjct: 77 ANPRNTGVTFSGGEPFWQAAALAELARTLKQAGLNV 112 >gi|152971907|ref|YP_001337016.1| coproporphyrinogen III oxidase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956756|gb|ABR78786.1| coproporphyrinogen III oxidase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 378 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L DL + +E + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLQADAQYAQGREIGTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L G EI +E N GT+E + +D+ Sbjct: 66 GGTPSL-LSGPAMQTLLDGVRACLPLAAGAEITMEANPGTVEADRFVDY 113 >gi|126465568|ref|YP_001040677.1| radical SAM domain-containing protein [Staphylothermus marinus F1] gi|126014391|gb|ABN69769.1| Radical SAM domain protein [Staphylothermus marinus F1] Length = 506 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 36/167 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C+ C + ++ + ++++ G L+ Sbjct: 147 CNL-----------RCKHC---YQRADKPLPNELSLKEKLMVVDQLDRAGVAA---IALS 189 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 GGEP + ++ + RG AV TNG W+ K++ ++L Sbjct: 190 GGEPTIHPHFRRILYEIASRGMYAAVATNG---------WV-----FADIEKLREAKKLG 235 Query: 151 LVFPQVNVSPENYIGFDFERFSLQ---PMDGPFLEENTNLAISYCFQ 194 L + +V+V + D+ R +Q LE L I++ Sbjct: 236 LRYVEVSVDSADPKKHDWFR-GVQGSWERAVKALENAVKLGINHAMA 281 >gi|118590289|ref|ZP_01547692.1| molybdenum cofactor biosynthesis protein A [Stappia aggregata IAM 12614] gi|118437261|gb|EAV43899.1| molybdenum cofactor biosynthesis protein A [Stappia aggregata IAM 12614] Length = 356 Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 22/93 (23%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ K ++++L L G ++ R LTGGEPL+ Sbjct: 45 DRCDFRCVYCMAEDMTFL----PKREVLSLEELDRLCTAFIEKGVRKLR---LTGGEPLV 97 Query: 98 QVDV-PLIQAL---NKRGFEIAVE-----TNGT 121 + ++ LI++L G A+E TNG+ Sbjct: 98 RKNIMSLIRSLGRHLDSG---ALEELTLTTNGS 127 >gi|238912645|ref|ZP_04656482.1| hypothetical protein SentesTe_16142 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 388 Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 12/105 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG++ V+ G Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 181 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI 128 GEPLL + VP ++ L+ GF + + T+G + + Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL 226 >gi|215485869|ref|YP_002328300.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O127:H6 str. E2348/69] gi|312967825|ref|ZP_07782038.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 2362-75] gi|254811542|sp|B7ULX8|MOAA_ECO27 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|215263941|emb|CAS08281.1| molybdopterin biosynthesis protein A [Escherichia coli O127:H6 str. E2348/69] gi|312287551|gb|EFR15458.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 2362-75] Length = 329 Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 78 RDFTDIIAAVRENDAIRQIAVTTNG 102 >gi|206578289|ref|YP_002236593.1| putative oxygen-independent coproporphyrinogen III oxidase [Klebsiella pneumoniae 342] gi|206567347|gb|ACI09123.1| putative oxygen-independent coproporphyrinogen III oxidase [Klebsiella pneumoniae 342] Length = 378 Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L DL + +E + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLQADAQYAQGREIGTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L G EI +E N GT+E + +D+ Sbjct: 66 GGTPSL-LSGPAMQTLLDGVRACLPLAAGAEITMEANPGTVEADRFVDY 113 >gi|168333908|ref|ZP_02692140.1| glycerol dehydratase activating enzyme [Epulopiscium sp. 'N.t. morphotype B'] Length = 310 Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Query: 50 CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQAL 107 C T+ + G N+++ I + ++ G ++GGEPLLQ + + + Sbjct: 96 CPTEAIR---QWGKIINIEECMKEILKDKGYYQRSGGGVTISGGEPLLQSEFVASVFREC 152 Query: 108 NKRGFEIAVETN 119 G VET+ Sbjct: 153 QNEGIHTCVETS 164 >gi|83312091|ref|YP_422355.1| coenzyme PQQ synthesis protein E [Magnetospirillum magneticum AMB-1] gi|82946932|dbj|BAE51796.1| Coenzyme PQQ synthesis protein E [Magnetospirillum magneticum AMB-1] Length = 373 Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 12/89 (13%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR C +D + ++ + + + + + Sbjct: 43 CNL-----------ACRHCGSDCLRDNSSRDRELPPEAIKRELAAIAQACDPRHVTLAII 91 Query: 92 GGEPLLQVDVPLIQALNK-RGFEIAVETN 119 GGEPL++ D+ + A G+ + TN Sbjct: 92 GGEPLIRRDIEEVGAFAAGLGYGWGITTN 120 >gi|191174498|ref|ZP_03035997.1| molybdenum cofactor biosynthesis protein A [Escherichia coli F11] gi|218699153|ref|YP_002406782.1| molybdenum cofactor biosynthesis protein A [Escherichia coli IAI39] gi|226704818|sp|B7NNL1|MOAA_ECO7I RecName: Full=Molybdenum cofactor biosynthesis protein A gi|190905211|gb|EDV64851.1| molybdenum cofactor biosynthesis protein A [Escherichia coli F11] gi|218369139|emb|CAR16894.1| molybdopterin biosynthesis protein A [Escherichia coli IAI39] Length = 329 Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 78 RDFTDIIAAVRENDAIRQIAVTTNG 102 >gi|222095767|ref|YP_002529824.1| molybdenum cofactor biosynthesis protein a [Bacillus cereus Q1] gi|221239825|gb|ACM12535.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus Q1] Length = 306 Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-R 110 D+ +Q D++ L G + R LTGGEPLL+ D+P LI L K Sbjct: 9 DYAFLQEEC--LLTFDEIERLARLFISMGVNKIR---LTGGEPLLRKDLPKLIGRLAKLE 63 Query: 111 GFE-IAVETNG 120 G + I + TNG Sbjct: 64 GLKDIGLTTNG 74 >gi|218777947|ref|YP_002429265.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01] gi|218759331|gb|ACL01797.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01] Length = 292 Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%) Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 + Q+ DLI++ G L GGEPLL ++ ++ G ++++TNG Sbjct: 36 PELSKSQIIDLIKQCSKAGTANLY---LFGGEPLLHPNLDDFVRTAKGLGMRVSMDTNG 91 >gi|218886964|ref|YP_002436285.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757918|gb|ACL08817.1| Radical SAM domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 450 Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 37/116 (31%), Gaps = 30/116 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR C G + A L+ VL Sbjct: 32 CNL-----------HCRMC-VKHSSDIRAPEGDMTAETYAALLPAMPHLNG-----LVLN 74 Query: 92 G-GEPLLQVDVPLIQALNKRGFE----IAVETNGTI--------EPPQGIDWICVS 134 G GEPLL D+ L ++ + +TNG + G+D IC+S Sbjct: 75 GVGEPLLHRDLETFIRLARQHMPPEGWVGFQTNGHLLTESRAHALLAAGLDRICLS 130 >gi|149203271|ref|ZP_01880241.1| pyrroloquinoline quinone biosynthesis protein PqqE [Roseovarius sp. TM1035] gi|149143104|gb|EDM31143.1| pyrroloquinoline quinone biosynthesis protein PqqE [Roseovarius sp. TM1035] Length = 363 Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 6/80 (7%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R C +C R AD + + L+GGEP + D+ Sbjct: 15 RCPLSCPYC-----SNPVELTARETELSTADWVSVFQQAADLGVLQLHLSGGEPASRRDL 69 Query: 102 P-LIQALNKRGFEIAVETNG 120 LI+A G + T+G Sbjct: 70 EELIKAARDAGLYTNLITSG 89 >gi|116753780|ref|YP_842898.1| radical SAM domain-containing protein [Methanosaeta thermophila PT] gi|116665231|gb|ABK14258.1| Radical SAM domain protein [Methanosaeta thermophila PT] Length = 383 Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 21/69 (30%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GC ++C +C ++D + +++E Sbjct: 16 GCP-----------SKCSYC-----WSSEEGSPVMSIDTVKEIVE---WLKLFRDDPVTF 56 Query: 91 T--GGEPLL 97 T GGEPLL Sbjct: 57 TFHGGEPLL 65 >gi|327262583|ref|XP_003216103.1| PREDICTED: molybdenum cofactor biosynthesis protein 1-like [Anolis carolinensis] Length = 560 Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N ++ + +C++C G+Q T + + ++I + ++ LTG Sbjct: 82 NYLRISLTEKCNLRCQYC-MPEEGVQLTP--KSELLSTQEIITLAGLFVKEGVDKIRLTG 138 Query: 93 GEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GEPL++ D V +I + K G E IAV TNG Sbjct: 139 GEPLIRPDVVDIIAQMRKLEGLETIAVTTNG 169 >gi|78060958|ref|YP_370866.1| radical SAM oxidoreductase [Burkholderia sp. 383] gi|77968843|gb|ABB10222.1| Radical SAM oxidoreductase [Burkholderia sp. 383] Length = 386 Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 22/116 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R +V + + ++E + Sbjct: 38 CNL-----------ACNGCGKIDY--PDPILNQRLSVQECLEAVDECG------APIVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 GGEPLL ++P +++ + KR + + TN + + +D SP + + G Sbjct: 79 AGGEPLLHKEMPEIVRGIMKRKKFVYLCTN-ALLMEKKMDDYQPSPYFVWSVHLDG 133 >gi|83999867|emb|CAI59980.1| putative (Fe-S) oxidoreductase [Streptomyces tenjimariensis] Length = 385 Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 22/116 (18%) Query: 32 CNLWSGREQDRLSAQCR-FCDT--DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL +C + D+ + ++ K + +++ L++E G+KE Y Sbjct: 38 CNLTC--------RECWMYGDSAAESTWLEEVKRDQISLEMWNGLLDEL-AHGQKEKVYL 88 Query: 89 VLTGGEPLLQV-DVPLIQALNKR--GFEIAVETNGTIEP-------PQGIDWICVS 134 + GGEPL+ V L++ R + + TN T+ P GID + VS Sbjct: 89 TIMGGEPLMHPQLVRLVREAKTRLPDCNLDMSTNATLLPRYAQELVDAGIDDVYVS 144 >gi|327400377|ref|YP_004341216.1| Radical SAM domain-containing protein [Archaeoglobus veneficus SNP6] gi|327315885|gb|AEA46501.1| Radical SAM domain protein [Archaeoglobus veneficus SNP6] Length = 392 Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119 ++ ++IE+ G K V+TGG+PL++ DV ++ +G A+ + Sbjct: 37 HPNELTTEEAFNVIEQITEFG-KPYPLVVITGGDPLMRDDVFDIVSKATSKGIRTAIAFS 95 Query: 120 GT 121 GT Sbjct: 96 GT 97 >gi|255077056|ref|XP_002502181.1| predicted protein [Micromonas sp. RCC299] gi|226517446|gb|ACO63439.1| predicted protein [Micromonas sp. RCC299] Length = 395 Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 9/77 (11%) Query: 28 RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 RF+ C Q + +C FC T G + D++ + + + Sbjct: 145 RFTVC----VSSQVGCAMRCSFCATGRQGFR----RNLTSDEIVNQVLSMEDVFGRRATN 196 Query: 88 CVLTG-GEPLLQVDVPL 103 V+ G GEPLL + L Sbjct: 197 VVMMGMGEPLLNLREVL 213 >gi|166363205|ref|YP_001655478.1| molybdopterin biosynthesis protein A [Microcystis aeruginosa NIES-843] gi|189028690|sp|B0JNC2|MOAA_MICAN RecName: Full=Molybdenum cofactor biosynthesis protein A gi|166085578|dbj|BAG00286.1| molybdopterin biosynthesis protein A [Microcystis aeruginosa NIES-843] Length = 329 Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 7/64 (10%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR + +C++C D + ++ +++ L++ +I LTGGEPLL Sbjct: 13 DRCNFRCQYCLPEDAELAYVR--PQDLLTREEILTLVKNVFIPLGFRKFR--LTGGEPLL 68 Query: 98 QVDV 101 +V Sbjct: 69 HPEV 72 >gi|114771059|ref|ZP_01448499.1| radical SAM domain protein [alpha proteobacterium HTCC2255] gi|114548341|gb|EAU51227.1| radical SAM domain protein [alpha proteobacterium HTCC2255] Length = 316 Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119 D+++D +++ TGGEP L D + + + +R +++ + TN Sbjct: 66 TPDEVSDYLDQIDQREWATNE-IAFTGGEPFLNPDMIEIARRCLERNYKVLILTN 119 >gi|332139975|ref|YP_004425713.1| Signaling protein with a acyltransferase and GGDEF domains [Alteromonas macleodii str. 'Deep ecotype'] gi|327549997|gb|AEA96715.1| Signaling protein with a acyltransferase and GGDEF domains [Alteromonas macleodii str. 'Deep ecotype'] Length = 632 Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 9/68 (13%) Query: 70 LADLIEEQWITGEKEGRYCVLTGGE-------PLLQ--VDVPLIQALNKRGFEIAVETNG 120 L D ++ + TGG+ P+ PL ++L+ + I V+T+G Sbjct: 110 LLDHLDVAVYSQIGSKPIVTFTGGDAIPFVNRPVSHVKPLFPLPESLHSQRIIIRVQTSG 169 Query: 121 TIEPPQGI 128 TI P I Sbjct: 170 TIRLPIRI 177 >gi|327468552|gb|EGF14031.1| transcriptional regulator [Streptococcus sanguinis SK330] Length = 430 Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 11/83 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99 +C++C + + + + EE+ + GGEPLL ++ Sbjct: 91 RCKYC---YEHFKNIGMSIETENAILKFAEEKLSNSQYHFLRIAWFGGEPLLGYKTIQRL 147 Query: 100 DVPLIQALNKRG--FEIAVETNG 120 + ++ + G + ++ TNG Sbjct: 148 SLEFLKICERFGITYSASITTNG 170 >gi|295097942|emb|CBK87032.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 388 Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG + V+ G Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVVMMG 181 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + VP ++ L+ GF + + T+G + + D I V Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232 >gi|294675020|ref|YP_003575636.1| putative Fe-S oxidoreductase [Prevotella ruminicola 23] gi|294471944|gb|ADE81333.1| putative Fe-S oxidoreductase [Prevotella ruminicola 23] Length = 361 Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 10/98 (10%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 C L + CR C +D + + +++ + + +++ Sbjct: 37 CTLRCDLK-------CRHCGSD--CKMKSDSRDMPKEDFLRVLDGIAKKTDPHKVFVIIS 87 Query: 92 GGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQGI 128 GGEPL++ D+ +A+ +GF + TN PQ Sbjct: 88 GGEPLMRQDIEECGRAIYDKGFPWGMVTNALHLTPQRW 125 >gi|294628651|ref|ZP_06707211.1| molybdenum cofactor biosynthesis protein A [Streptomyces sp. e14] gi|292831984|gb|EFF90333.1| molybdenum cofactor biosynthesis protein A [Streptomyces sp. e14] Length = 343 Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 14/105 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + K D++ LI TGGEPLL+ Sbjct: 33 DRCNLRCTYCMPEEGLQWLAKPDLLTDDEIVRLI--GIAVASLGIEEVRFTGGEPLLRPG 90 Query: 101 V----PLIQALNKRGFEIAVETNG-------TIEPPQGIDWICVS 134 + + AL R ++ TNG G+D + VS Sbjct: 91 LVGIVEHVTALEPRPVT-SLTTNGIGLKRTAAALKEAGLDRVNVS 134 >gi|288933575|ref|YP_003437634.1| oxygen-independent coproporphyrinogen III oxidase [Klebsiella variicola At-22] gi|288888304|gb|ADC56622.1| oxygen-independent coproporphyrinogen III oxidase [Klebsiella variicola At-22] Length = 378 Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L DL + +E + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLQADAQYAQGREIGTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L G EI +E N GT+E + +D+ Sbjct: 66 GGTPSL-LSGPAMQTLLDGVRACLPLAAGAEITMEANPGTVEADRFVDY 113 >gi|261340821|ref|ZP_05968679.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC 35316] gi|288317247|gb|EFC56185.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC 35316] Length = 388 Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG + V+ G Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVVMMG 181 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + VP ++ L+ GF + + T+G + + D I V Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232 >gi|146312652|ref|YP_001177726.1| hypothetical protein Ent638_3011 [Enterobacter sp. 638] gi|205829755|sp|A4WD95|RLMN_ENT38 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|145319528|gb|ABP61675.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter sp. 638] Length = 388 Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ +TG + V+ G Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVVMMG 181 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL + VP ++ L+ GF + + T+G + + D I V Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232 >gi|323701651|ref|ZP_08113323.1| glycyl-radical enzyme activating protein family [Desulfotomaculum nigrificans DSM 574] gi|323533424|gb|EGB23291.1| glycyl-radical enzyme activating protein family [Desulfotomaculum nigrificans DSM 574] Length = 311 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 2/68 (2%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119 G +V+++ ++EE I + G L+GGEPLLQ + L++ +RG + A+ET Sbjct: 116 GKYMSVEEVLKIVEEDSIFYARSGGGLTLSGGEPLLQAEFVYKLLKEAKERGMDTAIETC 175 Query: 120 GTIEPPQG 127 G ++ + Sbjct: 176 GYVDWKKA 183 >gi|311280339|ref|YP_003942570.1| molybdenum cofactor biosynthesis protein A [Enterobacter cloacae SCF1] gi|308749534|gb|ADO49286.1| molybdenum cofactor biosynthesis protein A [Enterobacter cloacae SCF1] Length = 329 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 19/134 (14%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + + G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPGSVSNNGFLTVDEIRRVTRAFSALGTEKVR---LTGGEPSLR 77 Query: 99 VD-VPLIQALNKRGF--EIAVETNG-------TIEPPQGIDWICVSP---KAGCDLKIKG 145 D V +I A+ + +IAV TNG + G+ + VS A I G Sbjct: 78 RDFVDIIAAVRENPVIRQIAVTTNGYRLARDAALWRDAGLTHVNVSVDSLDARQFHAITG 137 Query: 146 GQELKLVFPQVNVS 159 + + V ++ + Sbjct: 138 QDKFRQVMDGIDAA 151 >gi|300087157|ref|YP_003757679.1| Cfr family radical SAM protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526890|gb|ADJ25358.1| radical SAM enzyme, Cfr family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 356 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 9/97 (9%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GE 94 Q C +C T G ++Q+ E G V G GE Sbjct: 112 CVSSQVGCMIGCPYCATGMNGFHRNLSPGEMIEQVLYYRGETGRVGRNSLTNVVFMGMGE 171 Query: 95 PLLQVD-----VPLIQALNKRGF---EIAVETNGTIE 123 PLL D V L+ + + GF +I + T+G + Sbjct: 172 PLLNYDNVVTAVSLLNSHHGMGFGARQITISTSGIVP 208 >gi|240949246|ref|ZP_04753590.1| molybdenum cofactor biosynthesis protein A [Actinobacillus minor NM305] gi|240296362|gb|EER47006.1| molybdenum cofactor biosynthesis protein A [Actinobacillus minor NM305] Length = 337 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 18/135 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D + +C +C D K +VD++ + + G ++ R +TGGEP L+ D Sbjct: 31 DVCNFRCNYCLPDGYRPPSHKQTFLSVDEIQRVAQAFANLGTEKIR---ITGGEPTLRKD 87 Query: 101 -VPLIQALNK-RGFE-IAVETNG-------TIEPPQGIDWICVSPKAGCDLK----IKGG 146 + + L++ G IA+ TNG + GI + VS D + I G Sbjct: 88 FLEIAHRLSQTAGIRQIALTTNGYRMERDVELWQQAGITHLNVS-VDSLDPRQFHLITGE 146 Query: 147 QELKLVFPQVNVSPE 161 +L V ++ + E Sbjct: 147 NKLATVLNGIDRAFE 161 >gi|229093829|ref|ZP_04224927.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock3-42] gi|228689562|gb|EEL43371.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock3-42] Length = 339 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L + G ++ R LTG Sbjct: 24 DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKLFVSIGVRKIR---LTG 76 Query: 93 GEPLLQVDVP-LIQALNKRG--FEIAVETN 119 GEPLL+ D+ LI L K +I + TN Sbjct: 77 GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 106 >gi|269926309|ref|YP_003322932.1| molybdenum cofactor biosynthesis protein A [Thermobaculum terrenum ATCC BAA-798] gi|269789969|gb|ACZ42110.1| molybdenum cofactor biosynthesis protein A [Thermobaculum terrenum ATCC BAA-798] Length = 335 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 6/83 (7%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D+ + +C +C K D++ L+ I+ E+ + +TGGEP ++ Sbjct: 27 DKCNFRCTYCMPAEGLPWLKKSELLTFDEIERLV---RISVERGIKSVRVTGGEPTVRAG 83 Query: 101 VP-LIQALNK-RGFE-IAVETNG 120 +P LI L G E +++ TNG Sbjct: 84 LPELIHRLVNIPGLEDVSLTTNG 106 >gi|197124743|ref|YP_002136694.1| ribosomal RNA large subunit methyltransferase N [Anaeromyxobacter sp. K] gi|196174592|gb|ACG75565.1| Radical SAM domain protein [Anaeromyxobacter sp. K] Length = 338 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 59/186 (31%), Gaps = 22/186 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 ++ Q + C FC T +G+ + V QL + E+ V G Sbjct: 97 HVVCLSSQAGCALGCAFCATAKLGLDRSLRSWEMVSQLLAV----RADSERPITGVVFMG 152 Query: 93 -GEPLLQVDVPLIQ--ALNK-RG-----FEIAVETNGTIE------PPQGIDWICVSPKA 137 GEP L D L AL G I++ T G + +C+S A Sbjct: 153 QGEPFLNYDEVLAAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGHKFRLCISLNA 212 Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-RFSLQP--MDGPFLEENTNLAISYCFQ 194 K + ++ FP + R +L+ + G + E A+ Sbjct: 213 AMPWKRRALMPVEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGQLLA 272 Query: 195 NPKWRL 200 RL Sbjct: 273 GIPVRL 278 >gi|168234345|ref|ZP_02659403.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468958|ref|ZP_03074942.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455322|gb|EDX44161.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205331708|gb|EDZ18472.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 378 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L DL + +E + + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLDADVVWAQGREVKTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L EI +E N GT+E + ID+ Sbjct: 66 GGTPSL-LSGPAMQTLLDGVRARLNLAANAEITMEANPGTVEADRFIDY 113 >gi|167759297|ref|ZP_02431424.1| hypothetical protein CLOSCI_01644 [Clostridium scindens ATCC 35704] gi|167663171|gb|EDS07301.1| hypothetical protein CLOSCI_01644 [Clostridium scindens ATCC 35704] Length = 302 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 7/81 (8%) Query: 47 CRFCDT--DFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL---LQV 99 C C T DF + G Y+VD+L +++ + E+ G L+GGE + + Sbjct: 82 CDGCGTCVDFCNQNLREIVGREYSVDELVKELKKDEMFYEESGGGVTLSGGEVMTADMDY 141 Query: 100 DVPLIQALNKRGFEIAVETNG 120 L + L + G + ++T G Sbjct: 142 VEELAKKLYRHGITVTIDTCG 162 >gi|89896712|ref|YP_520199.1| hypothetical protein DSY3966 [Desulfitobacterium hafniense Y51] gi|89336160|dbj|BAE85755.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 323 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 12/95 (12%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C++C G+Q R +++ ++ G + R +TGGEPL++ Sbjct: 18 DRCNLRCKYC-MPAEGVQWIPHERILTYEEILRVMRISTTLGFRRFR---ITGGEPLIRA 73 Query: 100 DVPLIQALNKRGFEIAVE-----TNGTIEPPQGID 129 V ++ L VE TNG + D Sbjct: 74 GV--LEFLQNASQIPGVEDLMLTTNGILLADMAED 106 >gi|296274304|ref|YP_003656935.1| coenzyme PQQ biosynthesis protein E [Arcobacter nitrofigilis DSM 7299] gi|296098478|gb|ADG94428.1| coenzyme PQQ biosynthesis protein E [Arcobacter nitrofigilis DSM 7299] Length = 368 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 11/92 (11%) Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 LW E + +C +C DF + + + ++EE G + + Sbjct: 8 PLWMLLELTHKCPLECTYCYNQLDFANTKDS----MTKEDWFRVMEEARAMGAVQLGF-- 61 Query: 90 LTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 +GGEPLL D + +++ + F + T+G Sbjct: 62 -SGGEPLLNKDILEIVKKAAELKFYTNLITSG 92 >gi|293610193|ref|ZP_06692494.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827425|gb|EFF85789.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 384 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 14/105 (13%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIE----EQWITGEKEGRY 87 L +C +CD + G L L+ + + + Sbjct: 10 PLSLYIHMPWCVRKCPYCDFNSHAVPDGALSAELEQTYLKALVADFETQVEMAQGRSIHS 69 Query: 88 CVLTGGEPLL-------QVDVPLIQALN-KRGFEIAVETN-GTIE 123 + GG P L + L L + G EI +E N GT+E Sbjct: 70 VFIGGGTPSLISAKGYAWLFEQLKSLLKFEDGCEITLEANPGTLE 114 >gi|289524083|ref|ZP_06440937.1| putative pyruvate formate-lyase-activating enzyme [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502739|gb|EFD23903.1| putative pyruvate formate-lyase-activating enzyme [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 305 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119 G Y V +L IE + + G +GGEPL Q + L ++ K ++T+ Sbjct: 108 GKEYTVGELMKEIERDVLYFDNSGGGVTFSGGEPLYQHEFLLEVLKECKKIDIHRTLDTS 167 Query: 120 G 120 G Sbjct: 168 G 168 >gi|256825802|ref|YP_003149762.1| GTP cyclohydrolase subunit MoaA [Kytococcus sedentarius DSM 20547] gi|256689195|gb|ACV06997.1| GTP cyclohydrolase subunit MoaA [Kytococcus sedentarius DSM 20547] Length = 338 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 47/131 (35%), Gaps = 39/131 (29%) Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSG---CNLWSGREQDRLSAQCRFCDTDFVGI 57 M + + F GRVA R S CNL +C +C + Sbjct: 1 MSHLPLVDRF----------GRVATDLRLSVTDVCNL-----------RCTYC------L 33 Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRY-----CVLTGGEPLLQVDV-PLIQALNKR- 110 G ++ D EE R LTGGEPL + D+ ++ L++ Sbjct: 34 PEVVDGWLPRAEVLDR-EELVRLARIGTRTLGIEKIRLTGGEPLTRPDLVEIVADLHRAL 92 Query: 111 -GFEIAVETNG 120 E+A+ TNG Sbjct: 93 PEVELALTTNG 103 >gi|219852679|ref|YP_002467111.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c] gi|219546938|gb|ACL17388.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c] Length = 387 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 28/98 (28%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GC ++C +C ++ + D++ + Sbjct: 14 GCP-----------SRCHYC-----WSSDETSPVMKIETVRDVVA---WLNDFRDDRVTF 54 Query: 91 T--GGEPLL-------QVDVPLIQALNKRGFEIAVETN 119 T GGEPLL Q L + L+ E A++TN Sbjct: 55 TFHGGEPLLAGADFYRQALPLLSEGLSHLNPEFAMQTN 92 >gi|212224561|ref|YP_002307797.1| molybdenum cofactor biosynthesis protein A [Thermococcus onnurineus NA1] gi|212009518|gb|ACJ16900.1| molybdenum cofactor biosynthesis protein A [Thermococcus onnurineus NA1] Length = 308 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 26/142 (18%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104 +C FC G ++ L++ + + LTGGEP ++ D + ++ Sbjct: 25 RCFFC--HREGQHFNVRLELTPAEIERLVK---VASNLGIKKVKLTGGEPTVRDDIIEIV 79 Query: 105 QALNKRGFEIAVETNGTI-------EPPQGIDWICV---SPKAGCDLKIKGGQELKLVFP 154 + + ++++ TNG+ G+D + V S K KI G L +V Sbjct: 80 RRIKPYLRDLSMTTNGSRLKELAKPLAKAGLDRVNVSLHSLKPDVYKKITGVDMLDVVLD 139 Query: 155 QVNVSPENYIGFDFERFSLQPM 176 G + L P+ Sbjct: 140 ----------GIEEAVRYLSPV 151 >gi|161505526|ref|YP_001572638.1| hypothetical protein SARI_03691 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866873|gb|ABX23496.1| hypothetical protein SARI_03691 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 459 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GC++ + + C +C + + + + K R + + L I + + Sbjct: 32 AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRV 91 Query: 87 YCVLTGGEPLLQVDVPLIQ---ALNKR---GFEI--AVETNG 120 GGEP + + +P + AL ++ G +I A++TNG Sbjct: 92 DFAWQGGEPTM-MGLPFFRRAIALCEKYADGRKISHALQTNG 132 >gi|159030305|emb|CAO91200.1| moaA [Microcystis aeruginosa PCC 7806] Length = 331 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 7/64 (10%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR + +C++C D + ++ +++ L++ +I LTGGEPLL Sbjct: 15 DRCNFRCQYCLPEDAELAYVR--PQDLLTREEILTLVKNVFIPLGFRKFR--LTGGEPLL 70 Query: 98 QVDV 101 +V Sbjct: 71 HPEV 74 >gi|153004852|ref|YP_001379177.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter sp. Fw109-5] gi|152028425|gb|ABS26193.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter sp. Fw109-5] Length = 335 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 13/85 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + + +L + R LTGGEP L Sbjct: 31 DRCNFRCSYC------APMGPDRQEDPLTRPELARVVGVFARLGIRRVRLTGGEPTL--R 82 Query: 101 VPLIQALNK----RGF-EIAVETNG 120 L+ + G EIA+ TNG Sbjct: 83 RELLDIVRDVRATPGIEEIALTTNG 107 >gi|70729521|ref|YP_259259.1| heme biosynthesis protein [Pseudomonas fluorescens Pf-5] gi|68343820|gb|AAY91426.1| heme biosynthesis protein [Pseudomonas fluorescens Pf-5] Length = 502 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 18/90 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 C+L R + + G N + +I+ G +E L Sbjct: 45 CDLKCLHCGSRAGHR--------------RPGELNTQECLSVIDSIAALGTRE---VTLI 87 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120 GGE L+ D LIQA++ G +A++T G Sbjct: 88 GGEAYLRKDWTRLIQAIHDHGMYVAIQTGG 117 >gi|213158400|ref|YP_002319698.1| molybdenum cofactor biosynthesis protein A [Acinetobacter baumannii AB0057] gi|215483142|ref|YP_002325349.1| molybdenum cofactor biosynthesis protein A [Acinetobacter baumannii AB307-0294] gi|294838641|ref|ZP_06783324.1| molybdenum cofactor biosynthesis protein A [Acinetobacter sp. 6013113] gi|294859551|ref|ZP_06797320.1| molybdenum cofactor biosynthesis protein A [Acinetobacter sp. 6013150] gi|301345476|ref|ZP_07226217.1| molybdenum cofactor biosynthesis protein A [Acinetobacter baumannii AB056] gi|301510810|ref|ZP_07236047.1| molybdenum cofactor biosynthesis protein A [Acinetobacter baumannii AB058] gi|301595060|ref|ZP_07240068.1| molybdenum cofactor biosynthesis protein A [Acinetobacter baumannii AB059] gi|213057560|gb|ACJ42462.1| molybdenum cofactor biosynthesis protein A [Acinetobacter baumannii AB0057] gi|213988902|gb|ACJ59201.1| molybdenum cofactor biosynthesis protein A [Acinetobacter baumannii AB307-0294] Length = 343 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 16/106 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + + ++ L + ++ +TGGEPL++ Sbjct: 30 DRCNFKCVYC----MPEHPEWLNKQDLLSFEALFQFCSFMVQQGIESIRITGGEPLMRQG 85 Query: 101 VPL----IQALNKRGF-EIAVETNGTIEP-------PQGIDWICVS 134 + +QAL G I++ TNG G+D + +S Sbjct: 86 IVHFVRDLQALKALGLKRISMTTNGHYLAKYAQQLKDAGLDDLNIS 131 >gi|169795655|ref|YP_001713448.1| molybdopterin biosynthesis, protein A [Acinetobacter baumannii AYE] gi|169148582|emb|CAM86448.1| molybdopterin biosynthesis, protein A [Acinetobacter baumannii AYE] Length = 346 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 16/106 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C + + ++ L + ++ +TGGEPL++ Sbjct: 33 DRCNFKCVYC----MPEHPEWLNKQDLLSFEALFQFCSFMVQQGIESIRITGGEPLMRQG 88 Query: 101 VPL----IQALNKRGF-EIAVETNGTIEP-------PQGIDWICVS 134 + +QAL G I++ TNG G+D + +S Sbjct: 89 IVHFVRDLQALKALGLKRISMTTNGHYLAKYAQQLKDAGLDDLNIS 134 >gi|86358007|ref|YP_469899.1| molybdenum cofactor biosynthesis protein A [Rhizobium etli CFN 42] gi|123738324|sp|Q2K7L4|MOAA_RHIEC RecName: Full=Molybdenum cofactor biosynthesis protein A gi|86282109|gb|ABC91172.1| molybdenum cofactor biosynthesis protein [Rhizobium etli CFN 42] Length = 348 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C K +++L L G + R LTGGEPL++ + Sbjct: 38 DRCDFRCTYC-MAENMTFLPKKDLLTLEELDRLCSAFIAKGVSKIR---LTGGEPLVRKN 93 Query: 101 VP-LIQALNKR---GF-EIAVETNGT 121 + L++ L + G E+ + TNG+ Sbjct: 94 IMYLVRKLGAKIGSGLDELTLTTNGS 119 >gi|116734668|ref|NP_001068566.1| molybdenum cofactor biosynthesis protein 1 isoform 4 [Homo sapiens] gi|56204714|emb|CAI20015.1| molybdenum cofactor synthesis 1 [Homo sapiens] gi|119624405|gb|EAX04000.1| molybdenum cofactor synthesis 1, isoform CRA_c [Homo sapiens] gi|119624406|gb|EAX04001.1| molybdenum cofactor synthesis 1, isoform CRA_c [Homo sapiens] Length = 385 Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + K +++ L G + R LT Sbjct: 80 CNL-----------RCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGIDKIR---LT 125 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GGEPL++ D V ++ L + G I V TNG Sbjct: 126 GGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNG 157 >gi|332140865|ref|YP_004426603.1| molybdenum cofactor biosynthesis protein A [Alteromonas macleodii str. 'Deep ecotype'] gi|327550887|gb|AEA97605.1| molybdenum cofactor biosynthesis protein A [Alteromonas macleodii str. 'Deep ecotype'] Length = 322 Score = 35.8 bits (82), Expect = 4.5, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 33/149 (22%) Query: 46 QCRFCDTDFVGIQGTKGGR----YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 +C++C G +G +++++ L++ G + R LTGGEP L+ D Sbjct: 24 RCQYC-----LPDGYEGPSSDQFMSLNEIDTLLKAFAKLGTSKVR---LTGGEPTLRRD- 74 Query: 102 PLIQALNKRG-----FEIAVETNGTI-------EPPQGIDWICVS-----PKAGCDLKIK 144 + L+ +A+ T+G G+ + VS P+ I Sbjct: 75 -FLDILHLTSNTPGIKRVAMTTHGARMEKFAHQWKDAGLHQVNVSIDSLDPRQFA--AIT 131 Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSL 173 G +LK V ++ + + + L Sbjct: 132 GQDKLKAVLRGLDSAIDAGLDVKVNSVLL 160 >gi|325262382|ref|ZP_08129119.1| radical SAM domain protein [Clostridium sp. D5] gi|324032214|gb|EGB93492.1| radical SAM domain protein [Clostridium sp. D5] Length = 363 Score = 35.8 bits (82), Expect = 4.5, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 15/92 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R + C + + ++ L + TG + +L Sbjct: 71 CNLHCKGCYARANHLC---------EEEITKRQMTREEWGSLFSQAEETGIG---FILLA 118 Query: 92 GGEPLLQVDVPLIQALNKRG-FEIAVETNGTI 122 GGEPLL+ DV A++KR F + TNGT+ Sbjct: 119 GGEPLLRRDVLEEAAVHKRILFPVF--TNGTM 148 >gi|255014863|ref|ZP_05286989.1| putative heme biosynthesis protein [Bacteroides sp. 2_1_7] Length = 358 Score = 35.8 bits (82), Expect = 4.5, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 3/89 (3%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R + CR C +D V+ +I++ E + TGGE L++ D+ Sbjct: 39 RCNVSCRHCGSDCHVSASVPD--MPVEDFLKVIDDITPYVEPNKVLVIFTGGEALIRKDI 96 Query: 102 PLI-QALNKRGFEIAVETNGTIEPPQGID 129 L +RG+ + +NG + + +D Sbjct: 97 EKCGLELYRRGYPWGIVSNGYLMTRERLD 125 >gi|119873386|ref|YP_931393.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM 4184] gi|119674794|gb|ABL89050.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184] Length = 364 Score = 35.8 bits (82), Expect = 4.5, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 9/101 (8%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103 S C +C Q + Y + ++E + GG+P Q L Sbjct: 148 SLDCLYC-------QNWQYRTYPSNPRLVSVDELERAMGRRVTCVCFFGGDPAPQTVHAL 200 Query: 104 I--QALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 + + ++G + ET+G I P + +S K G +K Sbjct: 201 LVAKRAAEKGIRVCWETSGQIAPHLLDKVVDISLKTGGIVK 241 >gi|2645879|gb|AAB87523.1| molybdenum cofactor biosynthesis protein A [Homo sapiens] Length = 385 Score = 35.8 bits (82), Expect = 4.5, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + K +++ L G + R LT Sbjct: 80 CNL-----------RCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGIDKIR---LT 125 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GGEPL++ D V ++ L + G I V TNG Sbjct: 126 GGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNG 157 >gi|327400600|ref|YP_004341439.1| Radical SAM domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316108|gb|AEA46724.1| Radical SAM domain protein [Archaeoglobus veneficus SNP6] Length = 394 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 42/109 (38%), Gaps = 24/109 (22%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD---LIEEQWITGEKEGR 86 +GCNL C FC +G + D L + L E+ E +G+ Sbjct: 104 TGCNL-----------NCIFC----SVDEGRRSRTRAADYLVEPEYLAEKLKEIAEFKGK 148 Query: 87 YCV--LTG-GEPLLQVDVPLIQALNKRGFEIAV---ETNGTIEPPQGID 129 + G GEPLL + + R E+ V +TNGT+ ID Sbjct: 149 GVEAHIDGQGEPLLYPYMEELLERISRIKEVEVISMQTNGTLLNDDRID 197 >gi|300022010|ref|YP_003754621.1| hopanoid biosynthesis associated radical SAM protein HpnH [Hyphomicrobium denitrificans ATCC 51888] gi|299523831|gb|ADJ22300.1| hopanoid biosynthesis associated radical SAM protein HpnH [Hyphomicrobium denitrificans ATCC 51888] Length = 382 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGID 129 V+ GGEPLL ++P +++ +G + V TN + + ID Sbjct: 72 GAPVVVMAGGEPLLHKELPEIVEGALAKGKFVTVCTN-ALLLEKKID 117 >gi|239905434|ref|YP_002952173.1| hypothetical protein DMR_07960 [Desulfovibrio magneticus RS-1] gi|239795298|dbj|BAH74287.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 813 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 29/92 (31%), Gaps = 19/92 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C FC G + E G R LT Sbjct: 108 CNLAC--------RHCLFC------SGPAAGAELPTAVALARVAEAAALG---CRVFALT 150 Query: 92 GGEPLLQVDVP--LIQALNKRGFEIAVETNGT 121 GGEP + + AL G +A+ TNGT Sbjct: 151 GGEPFCHPGLSDIVAAALAVPGSHVAILTNGT 182 >gi|289597074|ref|YP_003483770.1| Radical SAM domain protein [Aciduliprofundum boonei T469] gi|289534861|gb|ADD09208.1| Radical SAM domain protein [Aciduliprofundum boonei T469] Length = 356 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 38/188 (20%) Query: 29 FSG-CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 +G CNL CR+C G+ ++ IE+ EK+ Sbjct: 7 LTGVCNL-----------NCRYC-------GGSIPEEVMPHEIQYSIEDLKNFVEKDKDA 48 Query: 88 CV-LTGGEPLL--QVDVPLIQALNKRGFEIAVETNG--TIEPPQG----IDWICVS---- 134 + GGEPLL + ++ + + F + TNG + P+ ID I VS Sbjct: 49 IIAFYGGEPLLRIEKMKEIMDNIRAKRFVVQ--TNGIFLHKIPEEYLNRIDAILVSIDGV 106 Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 P+ + G E+ V +V E Y G R ++ + + L++ + Sbjct: 107 PEVTNYYRGNGVYEI--VVDRVRKIREKYKGDLIARMAVSEESDIYRDVTHLLSLPF--D 162 Query: 195 NPKWRLSV 202 + W+L+V Sbjct: 163 HVHWQLNV 170 >gi|312195058|ref|YP_004015119.1| molybdenum cofactor biosynthesis protein A [Frankia sp. EuI1c] gi|311226394|gb|ADP79249.1| molybdenum cofactor biosynthesis protein A [Frankia sp. EuI1c] Length = 357 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 14/105 (13%) Query: 41 DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C G+ G D++ L+ LTGGEP L+ Sbjct: 49 DRCTLRCTYC-MPAEGVPWLPGTAILTDDEVVRLVR--IAVERLGVTEVRLTGGEPTLRP 105 Query: 100 DV-PLIQALNKR--GFEIAVETNG-TIE------PPQGIDWICVS 134 ++ L+ L E+++ TNG T+ G+D + VS Sbjct: 106 NLVELVGRLAALRPRPELSLTTNGLTLARSAGALRSAGLDRVNVS 150 >gi|239905079|ref|YP_002951818.1| hypothetical protein DMR_04410 [Desulfovibrio magneticus RS-1] gi|239794943|dbj|BAH73932.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 395 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 8/92 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 + R + +C C + + + +I++ + + Sbjct: 40 PVVVWNMTRRCNLKCVHC---YAKAVDPEGADDIGTVEAKAMIDDL---AAYGAPVMLFS 93 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEPL++ D+ L +G + TNGT+ Sbjct: 94 GGEPLVRKDLTELASHAVSKGMRAVISTNGTL 125 >gi|167630145|ref|YP_001680644.1| anaerobic ribonucleoside-triphosphate reductase activating protein, putative [Heliobacterium modesticaldum Ice1] gi|167592885|gb|ABZ84633.1| anaerobic ribonucleoside-triphosphate reductase activating protein, putative [Heliobacterium modesticaldum Ice1] Length = 167 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 22/89 (24%), Gaps = 21/89 (23%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 R +F GC +C C G ++ + I Sbjct: 20 RATIF--AQGCP-----------HRCAGCHNPHT-HDPLGGVEMELEAVLAEIGRARHIQ 65 Query: 82 EKEGRYCVLTGGEPL--LQVDVPLIQALN 108 +GGEP Q L + L Sbjct: 66 G-----VTFSGGEPFEQAQAFAELARRLK 89 >gi|87312365|ref|ZP_01094457.1| molybdopterin cofactor synthesis protein A [Blastopirellula marina DSM 3645] gi|87284930|gb|EAQ76872.1| molybdopterin cofactor synthesis protein A [Blastopirellula marina DSM 3645] Length = 333 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 8/91 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C +Q +++ + G ++ R LTGGEPL++ Sbjct: 24 DRCNIRCFYC-MPLENVQFKPRAELLTFEEIERVARLAVSLGVRKFR---LTGGEPLVRA 79 Query: 100 DV-PLIQALNK-RGFE-IAVETNGTIEPPQG 127 + LIQ L G E +A+ TNG + Q Sbjct: 80 QLHELIQRLAAIPGVEDLALTTNGVLLADQA 110 >gi|238026482|ref|YP_002910713.1| coproporphyrinogen III oxidase [Burkholderia glumae BGR1] gi|237875676|gb|ACR28009.1| Putative oxygen-independent coproporphyrinogen III oxidase [Burkholderia glumae BGR1] Length = 406 Score = 35.4 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 17/106 (16%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87 L +C +CD KG R+ + D + ++ Sbjct: 28 PLALYIHFPWCVRKCPYCD---FNSHEWKGERFPEQEYLDALRADLEQALPFVWGRQVHT 84 Query: 88 CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124 + GG P L L + L EI +E N GT E Sbjct: 85 VFIGGGTPSLLSAGGLDRLLSDVRALLPLDADAEITLEANPGTFEA 130 >gi|258406075|ref|YP_003198817.1| Radical SAM domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257798302|gb|ACV69239.1| Radical SAM domain protein [Desulfohalobium retbaense DSM 5692] Length = 363 Score = 35.4 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 17/96 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR + G + +LI+ TG + T Sbjct: 23 CNLAC--------KHCR----AEAHLDPYPGE-LTTGEAKNLIDTFPQTG---SPIIIFT 66 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126 GGEPLL+ D+ L++ + + NGT+ P Sbjct: 67 GGEPLLRPDLFDLVRHAKSKDLRCVMAPNGTLITPD 102 >gi|210620897|ref|ZP_03292314.1| hypothetical protein CLOHIR_00257 [Clostridium hiranonis DSM 13275] gi|210155109|gb|EEA86115.1| hypothetical protein CLOHIR_00257 [Clostridium hiranonis DSM 13275] Length = 348 Score = 35.4 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 24/110 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVG--IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 CNL +C +C + G + D+ + I+E+ + + R Sbjct: 11 CNL-----------RCSYC---YEGGCKPKKYMNKETADKCIEFIKEKLKEEKDDKRPLW 56 Query: 90 LT--GGEPLL------QVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 +T GGEPLL + L + R + TNGTI + +++I Sbjct: 57 ITLHGGEPLLNFDIVKYIKNKLDDEIVDRKIIYDMTTNGTIMNDEILEFI 106 >gi|170084371|ref|XP_001873409.1| predicted protein [Laccaria bicolor S238N-H82] gi|164650961|gb|EDR15201.1| predicted protein [Laccaria bicolor S238N-H82] Length = 525 Score = 35.4 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 19/94 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C G++ + G+ DQ ++I + + LT Sbjct: 21 CNL-----------RCFYC-MPSEGVELSPQGKLLTDQ--EIIRLASLFVDNGVTKIRLT 66 Query: 92 GGEPLLQVD-VPLIQ---ALNKRGFE-IAVETNG 120 GGEP ++ + L++ AL RG E IA+ +NG Sbjct: 67 GGEPSIRRGILELVRNLHALKDRGLESIAMTSNG 100 >gi|319654134|ref|ZP_08008223.1| hypothetical protein HMPREF1013_04843 [Bacillus sp. 2_A_57_CT2] gi|317394068|gb|EFV74817.1| hypothetical protein HMPREF1013_04843 [Bacillus sp. 2_A_57_CT2] Length = 394 Score = 35.4 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 12/61 (19%) Query: 86 RYCVLTGGEPLLQVD------VPLIQALNKRGFEIAVETNGTIEPP------QGIDWICV 133 R +TGGEP+L + +PL++ ++RG + +N T+E ID + + Sbjct: 79 RTMSITGGEPMLSLKSVENYVLPLLKYAHRRGIYTQINSNLTLELDRYKLIAPYIDVLHI 138 Query: 134 S 134 S Sbjct: 139 S 139 >gi|295102362|emb|CBK99907.1| GTP cyclohydrolase subunit MoaA [Faecalibacterium prausnitzii L2-6] Length = 325 Score = 35.4 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +CR+C + K R V + + + +T Sbjct: 20 CNL-----------RCRYC----MPDGVEKLEREAVLTYEEFLRLAALFARCGVDTVRVT 64 Query: 92 GGEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 GGEPL++ V L+ L G + + TNG Sbjct: 65 GGEPLVRKGVDQLVAGLKAIPGIRKVTMTTNG 96 >gi|266625528|ref|ZP_06118463.1| putative pyruvate formate-lyase activating enzyme [Clostridium hathewayi DSM 13479] gi|288862567|gb|EFC94865.1| putative pyruvate formate-lyase activating enzyme [Clostridium hathewayi DSM 13479] Length = 276 Score = 35.4 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 40/151 (26%), Gaps = 35/151 (23%) Query: 24 AVFCRFSGCNLWS------------------------------GREQDRLSAQCRFCDTD 53 AVF GCN+ G +C CD Sbjct: 22 AVF--LQGCNISCAYCHNPETQNLCTGCGVCVDGCPAGALKLNGETVVWDEDKCISCDRC 79 Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRG 111 + ++ + R ++GGE L + L K G Sbjct: 80 IAVCPSFASPKVREMSAEEVFCKV-SLNMPFIRGITVSGGECCLYPEFLKELFGLCRKAG 138 Query: 112 FEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 +++NG ++ + + + D+K Sbjct: 139 LSCLIDSNGMVDFSSCPELLDLCEGVMLDVK 169 >gi|242279562|ref|YP_002991691.1| glycyl-radical enzyme activating protein family [Desulfovibrio salexigens DSM 2638] gi|242122456|gb|ACS80152.1| glycyl-radical enzyme activating protein family [Desulfovibrio salexigens DSM 2638] Length = 320 Score = 35.4 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%) Query: 88 CVLTGGEPLLQVDVPLIQALNK---RGFEIAVET 118 +GGEP +Q LI AL RG A+E+ Sbjct: 147 VTFSGGEPTMQSAF-LIAALKDAKERGLHTAIES 179 >gi|254519002|ref|ZP_05131058.1| radical SAM domain-containing protein [Clostridium sp. 7_2_43FAA] gi|226912751|gb|EEH97952.1| radical SAM domain-containing protein [Clostridium sp. 7_2_43FAA] Length = 414 Score = 35.4 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 4/62 (6%) Query: 42 RLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 R C C F+ + K ++ +I+ G TGGEPLL+ D Sbjct: 116 RCMYNCWHCSAKRFIKDKNDKSKEMTTYEIKKIIKALQDLGVG---IIGFTGGEPLLRND 172 Query: 101 VP 102 + Sbjct: 173 LE 174 >gi|194390588|dbj|BAG62053.1| unnamed protein product [Homo sapiens] Length = 385 Score = 35.4 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + K +++ L G + R LT Sbjct: 80 CNL-----------RCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGIDKIR---LT 125 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GGEPL++ D V ++ L + G I V TNG Sbjct: 126 GGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNG 157 >gi|78189894|ref|YP_380232.1| Elongator protein 3/MiaB/NifB [Chlorobium chlorochromatii CaD3] gi|78172093|gb|ABB29189.1| GTP cyclohydrolase subunit MoaA [Chlorobium chlorochromatii CaD3] Length = 333 Score = 35.4 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 20/99 (20%) Query: 28 RFSG---CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84 R + CNL +C +C ++ + +L +IE G ++ Sbjct: 23 RLAVTSACNL-----------RCGYCLSEAHEPATLHQPLLSTAELCTIIELLAKHGIQK 71 Query: 85 GRYCVLTGGEPLLQVDV-PLIQALNKRG--FEIAVETNG 120 R+ TGGEPLL+ D+ LI + I + TNG Sbjct: 72 LRF---TGGEPLLRSDIVALIAMARQHSSIRTIGLTTNG 107 >gi|78221558|ref|YP_383305.1| radical SAM:molybdenum cofactor synthesis-like [Geobacter metallireducens GS-15] gi|78192813|gb|ABB30580.1| GTP cyclohydrolase subunit MoaA [Geobacter metallireducens GS-15] Length = 326 Score = 35.4 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 8/88 (9%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +CR+C G++ G + + L + G ++ R +TGGEPL++ Sbjct: 20 DRCNLRCRYC-MPAAGVEKLGHGDILSYEDLFRIARAAVAVGIEKIR---VTGGEPLVRK 75 Query: 100 DV-PLIQALNKR-GF-EIAVETNGTIEP 124 + P + L K G E+ + TNG + P Sbjct: 76 GIVPFLARLAKLPGLRELVLTTNGFLLP 103 >gi|306821751|ref|ZP_07455347.1| molybdenum cofactor biosynthesis protein A [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550220|gb|EFM38215.1| molybdenum cofactor biosynthesis protein A [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 145 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 5/92 (5%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + C +C G + + + ++ + + LTG Sbjct: 10 NYVRLSLTDRCNLNCVYC--MPKGQSPVFLQKDEIMSVDEIYKICLYLSKIGIDTIKLTG 67 Query: 93 GEPLLQVDV-PLIQALN--KRGFEIAVETNGT 121 GEPLL+ D +++ + I + TNGT Sbjct: 68 GEPLLREDFEEVVKKIKTIDEIKNITLTTNGT 99 >gi|158338612|ref|YP_001519789.1| molybdenum cofactor biosynthesis protein A [Acaryochloris marina MBIC11017] gi|189028680|sp|B0CDZ6|MOAA_ACAM1 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|158308853|gb|ABW30470.1| molybdenum cofactor biosynthesis protein A [Acaryochloris marina MBIC11017] Length = 331 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 7/64 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLL 97 DR + +C++C DT + +L LI + G R LTGGEPLL Sbjct: 13 DRCNFRCQYCMPDTQDLQFL-QPTAVLTATELLTLIRDVFIPLGFARFR---LTGGEPLL 68 Query: 98 QVDV 101 + D+ Sbjct: 69 RPDI 72 >gi|149922400|ref|ZP_01910834.1| Radical SAM [Plesiocystis pacifica SIR-1] gi|149816762|gb|EDM76252.1| Radical SAM [Plesiocystis pacifica SIR-1] Length = 307 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 38 REQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 R ++ C C V T+ R + LA+L++ + ++ V GEP L Sbjct: 3 RLTTDCNSGCHHCTVADVPADQTRAPR---EALAELVQARKQGSDE----LVFMRGEPTL 55 Query: 98 QVDVP-LIQALNKRGFE-IAVETNG 120 + D+P L +A K G+ I ++TNG Sbjct: 56 RPDLPALAKAARKVGYRLIQIQTNG 80 >gi|228993472|ref|ZP_04153382.1| Molybdenum cofactor biosynthesis protein A [Bacillus pseudomycoides DSM 12442] gi|228766294|gb|EEM14938.1| Molybdenum cofactor biosynthesis protein A [Bacillus pseudomycoides DSM 12442] Length = 306 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 8/71 (11%) Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR- 110 D+ +Q D++ L + G K+ R LTGGEPLL+ ++P LI+ L K Sbjct: 9 DYAFLQEEF--LLTFDEIERLAKLFVGMGVKKIR---LTGGEPLLRKELPKLIERLAKLD 63 Query: 111 GFE-IAVETNG 120 G I + TNG Sbjct: 64 GLTDIGLTTNG 74 >gi|228999509|ref|ZP_04159087.1| Molybdenum cofactor biosynthesis protein A [Bacillus mycoides Rock3-17] gi|229007065|ref|ZP_04164692.1| Molybdenum cofactor biosynthesis protein A [Bacillus mycoides Rock1-4] gi|228754214|gb|EEM03632.1| Molybdenum cofactor biosynthesis protein A [Bacillus mycoides Rock1-4] gi|228760220|gb|EEM09188.1| Molybdenum cofactor biosynthesis protein A [Bacillus mycoides Rock3-17] Length = 306 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 8/71 (11%) Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR- 110 D+ +Q D++ L + G K+ R LTGGEPLL+ ++P LI+ L K Sbjct: 9 DYAFLQEEF--LLTFDEIERLAKLFVGMGVKKIR---LTGGEPLLRKELPKLIERLAKLD 63 Query: 111 GFE-IAVETNG 120 G I + TNG Sbjct: 64 GLTDIGLTTNG 74 >gi|242278331|ref|YP_002990460.1| methyltransferase type 11 [Desulfovibrio salexigens DSM 2638] gi|242121225|gb|ACS78921.1| Methyltransferase type 11 [Desulfovibrio salexigens DSM 2638] Length = 1034 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 19/91 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN+ + C F + +++ +L + G K LT Sbjct: 95 CNMSC--------SHCLFSSSPQA------KRELATERVLELTAQAEALGCKMFA---LT 137 Query: 92 GGEPLLQVDVP--LIQALNKRGFEIAVETNG 120 GGEPL+ + L + L +AV TNG Sbjct: 138 GGEPLVHKGLDKILTRMLEIESSHVAVLTNG 168 >gi|200386947|ref|ZP_03213559.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604045|gb|EDZ02590.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 447 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GC++ + + C +C + + + + K R + + L I + + Sbjct: 20 AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 79 Query: 87 YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120 GGEP + + +P + AL ++ G +I A++TNG Sbjct: 80 DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 120 >gi|37680378|ref|NP_934987.1| hypothetical protein VV2194 [Vibrio vulnificus YJ016] gi|37199125|dbj|BAC94958.1| conserved hypothetical protein [Vibrio vulnificus YJ016] Length = 306 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 9/85 (10%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-------EKEGRYCVLTGGEPLL-- 97 C +C + + ++ + E +++ + + GGEPLL Sbjct: 38 CHYCYAKWAKPNELHRNVDEMKRVLSKLAEYFLSPNPIQQQLQYQSVRLNFAGGEPLLLK 97 Query: 98 QVDVPLIQALNKRGFEIAVETNGTI 122 Q + + + GFE ++ TNG + Sbjct: 98 QRLIDALDFAIELGFETSIITNGHL 122 >gi|315650922|ref|ZP_07903963.1| molybdenum cofactor biosynthesis protein A [Eubacterium saburreum DSM 3986] gi|315486836|gb|EFU77177.1| molybdenum cofactor biosynthesis protein A [Eubacterium saburreum DSM 3986] Length = 323 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 10/83 (12%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 +R + +C +C + ++D++ + G + + +TGGEPL++ Sbjct: 18 NRCNFRCTYC----MPETKKVDDTLSLDEIYQVAFAASKCGITKFK---ITGGEPLVRDG 70 Query: 101 V-PLIQALNKRG--FEIAVETNG 120 + I+ L+ +I + TNG Sbjct: 71 IVDFIRRLHDIDSVKDITMTTNG 93 >gi|301063120|ref|ZP_07203675.1| radical SAM domain protein [delta proteobacterium NaphS2] gi|300442764|gb|EFK06974.1| radical SAM domain protein [delta proteobacterium NaphS2] Length = 328 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 20/102 (19%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEK 83 +F CN+ C +C F ++ + + L+ G Sbjct: 7 IFV-TYRCNM-----------HCPYC---FASHLKAVQKKDMTLGDFQRLLAWMRGAGVV 51 Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP 124 + GGEP L ++ +++ G + + TN T +P Sbjct: 52 MAGFI---GGEPTLHPNLKEMMKMTRDAGISVTLFTNATFDP 90 >gi|205354475|ref|YP_002228276.1| regulatory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274256|emb|CAR39275.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629608|gb|EGE35951.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 447 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GC++ + + C +C + + + + K R + + L I + + Sbjct: 20 AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 79 Query: 87 YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120 GGEP + + +P + AL ++ G +I A++TNG Sbjct: 80 DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 120 >gi|164687526|ref|ZP_02211554.1| hypothetical protein CLOBAR_01167 [Clostridium bartlettii DSM 16795] gi|164603300|gb|EDQ96765.1| hypothetical protein CLOBAR_01167 [Clostridium bartlettii DSM 16795] Length = 449 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 29/113 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD-QLADLIEEQWITGEKEGRYCVL 90 CNL +C++C F G + ++ ++ + I R + Sbjct: 96 CNL-----------RCKYC---FASQGDFGGAKEIMNFEVGKAAIDYLIANSGNRRNLEI 141 Query: 91 T--GGEPLLQVDVPLIQALNKRGFEIA----------VETNGTIEPPQGIDWI 131 GGEPL+ + +++ L + G ++ + TNG + + I +I Sbjct: 142 DFFGGEPLM--NFEVVKQLVEYGRKVEKTRGKNIRFTITTNGVLLDDEKIKYI 192 >gi|160903003|ref|YP_001568584.1| radical SAM domain-containing protein [Petrotoga mobilis SJ95] gi|160360647|gb|ABX32261.1| Radical SAM domain protein [Petrotoga mobilis SJ95] Length = 455 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%) Query: 46 QCRFCDTDFVGIQGTK----GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 C +C F G + + + + + + I++++ + E LTGGEPLL Sbjct: 103 NCVYC---FQGEENKNRNITFKKNDSELIVNFIKKKFDASDDEKLTLTLTGGEPLL--KF 157 Query: 102 PLIQA 106 PLIQ Sbjct: 158 PLIQE 162 >gi|56415820|ref|YP_152895.1| regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364750|ref|YP_002144387.1| regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|207859166|ref|YP_002245817.1| regulatory protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|56130077|gb|AAV79583.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096227|emb|CAR61824.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|206710969|emb|CAR35337.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 447 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GC++ + + C +C + + + + K R + + L I + + Sbjct: 20 AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 79 Query: 87 YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120 GGEP + + +P + AL ++ G +I A++TNG Sbjct: 80 DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 120 >gi|16767236|ref|NP_462851.1| arylsulfatase regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205358021|ref|ZP_02574999.2| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|16422531|gb|AAL22810.1| putative arylsulfatase regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205328160|gb|EDZ14924.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261249089|emb|CBG26950.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996250|gb|ACY91135.1| putative arylsulfatase regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160481|emb|CBW20011.1| putative regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323132314|gb|ADX19744.1| putative arylsulfatase regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 447 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GC++ + + C +C + + + + K R + + L I + + Sbjct: 20 AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 79 Query: 87 YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120 GGEP + + +P + AL ++ G +I A++TNG Sbjct: 80 DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 120 >gi|328951852|ref|YP_004369186.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109] gi|328452176|gb|AEB08005.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109] Length = 344 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 18/89 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C+ C F +++ L + + G + V+ Sbjct: 12 CNL-----------RCKHC---FTNAGTPTPNELTLNEYDVLFRDLYKMGVFQ---LVIA 54 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETN 119 GGEP ++ DV ++ F + +ETN Sbjct: 55 GGEPFIRPDVWKIMDLAEALDFCLFIETN 83 >gi|323697523|ref|ZP_08109435.1| Radical SAM domain protein [Desulfovibrio sp. ND132] gi|323457455|gb|EGB13320.1| Radical SAM domain protein [Desulfovibrio desulfuricans ND132] Length = 322 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 21/110 (19%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEK 83 +F CNL C +C F + + A L+E Sbjct: 4 IFV-TYRCNL-----------ACSYC---FARELHAEYPEDLTEENFARLLEWMERAQLP 48 Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWIC 132 + GGEP L +P +++ + G + TNG + P D + Sbjct: 49 AAAFI---GGEPTLHPLLPYMVERTAEAGIAPVLFTNG-LFPTDLADRLT 94 >gi|307547057|ref|YP_003899536.1| coproporphyrinogen III oxidase [Halomonas elongata DSM 2581] gi|307219081|emb|CBV44351.1| coproporphyrinogen III oxidase [Halomonas elongata DSM 2581] Length = 391 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 16/105 (15%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWI----TGEKEGRY 87 L +C +CD F +G ++ LA LIE+ +E Sbjct: 7 PLALYVHVPWCVRKCPYCD--FNSHGVGRGAELPEEEYLAALIEDLDADLPLAAGREIVS 64 Query: 88 CVLTGGEPLLQVD---VPLIQALNKR-----GFEIAVETN-GTIE 123 + GG P L + L++AL R EI +E N GT+E Sbjct: 65 VFIGGGTPSLMSASFYLRLLEALQARLPLASDIEITLEANPGTLE 109 >gi|302669347|ref|YP_003832497.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302397011|gb|ADL35915.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 357 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 1/51 (1%) Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFE 113 + ++++ +TGGEPLL ++ ++ GF+ Sbjct: 56 EMTASEWKQILDQVKEDFSDHLPQINVTGGEPLLYPGFEEVMSYAHELGFK 106 >gi|302671353|ref|YP_003831313.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302395826|gb|ADL34731.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 479 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 25/111 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRY--C 88 CNL +C++C F G R +++ + I R Sbjct: 129 CNL-----------RCKYC---FADEGEYHGRRALMTEEVGKAALDFLIKNSGNRRNLEV 174 Query: 89 VLTGGEPLLQVDVP--------LIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GGEPL+ +V I+ + + F + TNGT+ + ++++ Sbjct: 175 DFFGGEPLMNWEVVKKIVEYGRSIEKEHNKNFRFTITTNGTLLNDEILEYV 225 >gi|268608314|ref|ZP_06142041.1| predicted Fe-S oxidoreductase [Ruminococcus flavefaciens FD-1] Length = 357 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 4/73 (5%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100 R + C C + K V+ L+ E G+ +TGGEPLL+ + Sbjct: 37 RCNEHCLHCGS---WCGDVKSEELTVEDYRKLLTEVKEDMTTYGKMLCITGGEPLLRNEF 93 Query: 101 VPLIQALNKRGFE 113 ++ + GF Sbjct: 94 FDIMGIAHDLGFH 106 >gi|221201199|ref|ZP_03574239.1| putative oxygen-independent coproporphyrinogen III oxidase [Burkholderia multivorans CGD2M] gi|221206347|ref|ZP_03579360.1| putative oxygen-independent coproporphyrinogen III oxidase [Burkholderia multivorans CGD2] gi|221213627|ref|ZP_03586601.1| putative oxygen-independent coproporphyrinogen III oxidase [Burkholderia multivorans CGD1] gi|221166416|gb|EED98888.1| putative oxygen-independent coproporphyrinogen III oxidase [Burkholderia multivorans CGD1] gi|221173656|gb|EEE06090.1| putative oxygen-independent coproporphyrinogen III oxidase [Burkholderia multivorans CGD2] gi|221179049|gb|EEE11456.1| putative oxygen-independent coproporphyrinogen III oxidase [Burkholderia multivorans CGD2M] Length = 404 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 17/106 (16%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87 L +C +CD KG R+ + D + ++ Sbjct: 28 PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPETEYLDALRADLEHALPLVWGRQVHT 84 Query: 88 CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124 + GG P L L + L EI +E N GT E Sbjct: 85 VFIGGGTPSLLSAAGLDRLLSDVRALLPLDADAEITLEANPGTFEA 130 >gi|167586473|ref|ZP_02378861.1| coproporphyrinogen III oxidase [Burkholderia ubonensis Bu] Length = 404 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 17/106 (16%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87 L +C +CD KG R+ + D + ++ Sbjct: 28 PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPETEYLDALRADLEHALPLVWGRQVHT 84 Query: 88 CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124 + GG P L L + L EI +E N GT E Sbjct: 85 VFIGGGTPSLLSAAGLDRLLSDVRALLPLDADAEITLEANPGTFEA 130 >gi|160902142|ref|YP_001567723.1| radical SAM domain-containing protein [Petrotoga mobilis SJ95] gi|160359786|gb|ABX31400.1| Radical SAM domain protein [Petrotoga mobilis SJ95] Length = 450 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 24/97 (24%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C + +G + +A+ I + K + Sbjct: 103 CNL-----------DCIYC---YETHEGPTMDEKTTETVANYIS--TVAKSKRRIHIGWF 146 Query: 92 GGEPLL------QVDVPLIQALNK--RGFEIAVETNG 120 GGEPLL ++ +I+A + F ++ TNG Sbjct: 147 GGEPLLKFDTMKYINEKVIKACEEYKTNFSSSISTNG 183 >gi|161525575|ref|YP_001580587.1| coproporphyrinogen III oxidase [Burkholderia multivorans ATCC 17616] gi|189349697|ref|YP_001945325.1| coproporphyrinogen III oxidase [Burkholderia multivorans ATCC 17616] gi|160343004|gb|ABX16090.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia multivorans ATCC 17616] gi|189333719|dbj|BAG42789.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia multivorans ATCC 17616] Length = 404 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 17/106 (16%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87 L +C +CD KG R+ + D + ++ Sbjct: 28 PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPETEYLDALRADLEHALPLVWGRQVHT 84 Query: 88 CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124 + GG P L L + L EI +E N GT E Sbjct: 85 VFIGGGTPSLLSAAGLDRLLSDVRALLPLDADAEITLEANPGTFEA 130 >gi|50083685|ref|YP_045195.1| putative oxidase; putative coproporphyrinogen III oxidase [Acinetobacter sp. ADP1] gi|49529661|emb|CAG67373.1| putative oxidase; putative coproporphyrinogen III oxidase [Acinetobacter sp. ADP1] Length = 385 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 14/113 (12%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIE----EQWITGEKEGRY 87 L +C +CD + G L L+ + ++ Sbjct: 11 PLSLYIHMPWCVRKCPYCDFNSHAVPNGALSLELEQQYLQALVADFETQVKFVQGRKIHS 70 Query: 88 CVLTGGEPLL------QVDVPLIQALNK--RGFEIAVETN-GTIEPPQGIDWI 131 + GG P L Q I+AL + EI +E N GT+E D++ Sbjct: 71 VFIGGGTPSLISAQGYQWLFEKIRALVDFEQDCEITLEANPGTVEHDPFADYL 123 >gi|309776266|ref|ZP_07671256.1| pyruvate formate-lyase-activating enzyme [Erysipelotrichaceae bacterium 3_1_53] gi|308915985|gb|EFP61735.1| pyruvate formate-lyase-activating enzyme [Erysipelotrichaceae bacterium 3_1_53] Length = 308 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118 +G R +V ++ D+ + E+ G ++GGE + Q L+ L KR A+ET Sbjct: 102 EGERTSVQKIIDICLQDKDFYEESGGGVTISGGEGMSQPAFLETLVIQLQKRQIHTAIET 161 Query: 119 NG 120 G Sbjct: 162 TG 163 >gi|282860187|ref|ZP_06269262.1| radical SAM domain protein [Prevotella bivia JCVIHMP010] gi|282587076|gb|EFB92306.1| radical SAM domain protein [Prevotella bivia JCVIHMP010] Length = 416 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 9/89 (10%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLI 104 C +C G K + + D I + +++ + GGEPLL + + Sbjct: 95 CSYC-----FEAGNKRKINMTEDVEDAIVRFLVKNKEKKISIIWFGGEPLLNIRTIENIT 149 Query: 105 QALNKR--GFEIAVETNGTIEPPQGIDWI 131 + L + ++ TNG++ ID + Sbjct: 150 KKLEMEHVNYSSSMITNGSLLNSHAIDIL 178 >gi|168822662|ref|ZP_02834662.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194472894|ref|ZP_03078878.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205358772|ref|ZP_02658959.2| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194459258|gb|EDX48097.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332070|gb|EDZ18834.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340950|gb|EDZ27714.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320088378|emb|CBY98138.1| Anaerobic sulfatase-maturating enzyme homolog aslB AnSME homolog [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 431 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GC++ + + C +C + + + + K R + + L I + + Sbjct: 4 AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63 Query: 87 YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120 GGEP + + +P + AL ++ G +I A++TNG Sbjct: 64 DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 104 >gi|84490112|ref|YP_448344.1| glycyl radical activating protein [Methanosphaera stadtmanae DSM 3091] gi|84373431|gb|ABC57701.1| predicted glycyl radical activating enzyme [Methanosphaera stadtmanae DSM 3091] Length = 238 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 27/132 (20%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GC+L +C++C + ++ R++++++ + I++ + V+ Sbjct: 24 GCDL-----------RCKYCHNPQL-LKNESLSRWDIEEVEEEIDKNVDFIDA----IVI 67 Query: 91 TGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLKI 143 +GGE LL +DV IQ + I ++TNG +D++ + KA D Sbjct: 68 SGGEALLHIDVVKHYIQKAKEFDLLIKLDTNGLHPENLNQIIDDLDYVAIDIKAPLDKYY 127 Query: 144 KGGQELKLVFPQ 155 K V+P Sbjct: 128 KISD----VYPN 135 >gi|330815845|ref|YP_004359550.1| Putative oxygen-independent coproporphyrinogen III oxidase [Burkholderia gladioli BSR3] gi|327368238|gb|AEA59594.1| Putative oxygen-independent coproporphyrinogen III oxidase [Burkholderia gladioli BSR3] Length = 409 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 17/106 (16%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87 L +C +CD KG R+ + D + ++ Sbjct: 28 PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPEEAYLDALRADLEQALPFVWGRQVHT 84 Query: 88 CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124 + GG P L L + L EI +E N GT E Sbjct: 85 IFIGGGTPSLLSAAGLDRLLSDVRALLPLDADAEITLEANPGTFEA 130 >gi|291523714|emb|CBK89301.1| Predicted Fe-S oxidoreductases [Eubacterium rectale DSM 17629] Length = 384 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 30/115 (26%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL--ADLIEEQWITGEKEGRYC 88 GCN+ +C+ C G+ D+L ++ +E + + Sbjct: 14 GCNM-----------RCKHC--------GSSCAEALPDELNTSEALEVCDQLKDLGLKVI 54 Query: 89 VLTGGEPLLQVDVPLI-QALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134 L+GGEP + D +I + L G ++ TNG GI +C+S Sbjct: 55 TLSGGEPTTRSDWHIIAKRLVDNGIITSIITNGWLIDENFIHNAITSGIRSVCLS 109 >gi|238922810|ref|YP_002936323.1| pyrroloquinoline quinone biosynthesis protein PqqE [Eubacterium rectale ATCC 33656] gi|238874482|gb|ACR74189.1| pyrroloquinoline quinone biosynthesis protein PqqE [Eubacterium rectale ATCC 33656] gi|291528824|emb|CBK94410.1| Predicted Fe-S oxidoreductases [Eubacterium rectale M104/1] Length = 336 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 30/115 (26%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL--ADLIEEQWITGEKEGRYC 88 GCN+ +C+ C G+ D+L ++ +E + + Sbjct: 14 GCNM-----------RCKHC--------GSSCAEALPDELNTSEALEVCDQLKDLGLKVI 54 Query: 89 VLTGGEPLLQVDVPLI-QALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134 L+GGEP + D +I + L G ++ TNG GI +C+S Sbjct: 55 TLSGGEPTTRSDWHIIAKRLVDNGIITSIITNGWLIDENFIHNAITSGIRSVCLS 109 >gi|228471002|ref|ZP_04055847.1| coenzyme PQQ synthesis protein E [Porphyromonas uenonis 60-3] gi|228307399|gb|EEK16413.1| coenzyme PQQ synthesis protein E [Porphyromonas uenonis 60-3] Length = 379 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 14/90 (15%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL G + CR + +V +I+ + + T Sbjct: 51 CNLHCGHC----GSDCRV---------ESGVDELSVADFIHIIDGLTPHVDPNKLLVIFT 97 Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120 GGE L+ Q AL +RG+ + TNG Sbjct: 98 GGEALVRQDIEEAGLALYRRGYPWGIVTNG 127 >gi|254512415|ref|ZP_05124482.1| radical SAM [Rhodobacteraceae bacterium KLH11] gi|221536126|gb|EEE39114.1| radical SAM [Rhodobacteraceae bacterium KLH11] Length = 436 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 25/109 (22%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD-QLADLIEEQWITGEKEGRYC 88 CNL C +C + G N++ ++A ++ + + G Sbjct: 80 QKCNL-----------ACTYC---YAAGGEFGGPARNMEWEVAKASVDRLVAEAEPGVRI 125 Query: 89 VLT--GGEPLLQVDV------PLIQALNKRGFEI--AVETNGTIEPPQG 127 L GGEPL+ D+ ++ G + ++ TNGT+ P+ Sbjct: 126 NLAFLGGEPLINRDLVQRTTEYAVEQAQANGLSVGFSITTNGTLLRPED 174 >gi|195977849|ref|YP_002123093.1| putative transcriptional regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974554|gb|ACG62080.1| putative transcriptional regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 431 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 13/84 (15%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-------- 97 +C++C + + + + + E+ G+ E GGEPLL Sbjct: 91 RCKYC---YEKFENISMTIEVEEAIVEFAEKLLSEGKFERFSVQWFGGEPLLGYRTIVRL 147 Query: 98 -QVDVPLIQALNKRGFEIAVETNG 120 + + L G+ + TNG Sbjct: 148 SEKFLELCSR-YDIGYFSGITTNG 170 >gi|197263100|ref|ZP_03163174.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241355|gb|EDY23975.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 431 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GC++ + + C +C + + + + K R + + L I + + Sbjct: 4 AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63 Query: 87 YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120 GGEP + + +P + AL ++ G +I A++TNG Sbjct: 64 DFAWQGGEPTM-MGLPFFRRVVALCEKYSDGRKITHALQTNG 104 >gi|157963910|ref|YP_001503944.1| molybdenum cofactor biosynthesis protein A [Shewanella pealeana ATCC 700345] gi|157848910|gb|ABV89409.1| molybdenum cofactor biosynthesis protein A [Shewanella pealeana ATCC 700345] Length = 328 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C + GR +V L +L E + LTGGEPL++ D Sbjct: 21 DRCDFRCVYC----MSEDPCFLGREHVLSLEELAWVAQAFTELGVKKIRLTGGEPLVRTD 76 Query: 101 VP-LIQAL-NKRGF-EIAVETNGT 121 L++ L G E+++ TNG+ Sbjct: 77 CDQLVKLLGKLPGLEELSMTTNGS 100 >gi|194449035|ref|YP_002047976.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205359382|ref|ZP_02669589.2| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|6960236|gb|AAF33426.1| similar to E. coli putative arylsulfatase regulator (ASLB) (SP:P25550) and hypothetical protein (YDEM) (SP:P76134) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194407339|gb|ACF67558.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336490|gb|EDZ23254.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|312915085|dbj|BAJ39059.1| putative arylsulfatase regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 431 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GC++ + + C +C + + + + K R + + L I + + Sbjct: 4 AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63 Query: 87 YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120 GGEP + + +P + AL ++ G +I A++TNG Sbjct: 64 DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 104 >gi|146296011|ref|YP_001179782.1| radical SAM domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409587|gb|ABP66591.1| GTP cyclohydrolase subunit MoaA [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 308 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 8/112 (7%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + C++C T K + D++ +I G K+ R+ TGGEP L+ D Sbjct: 18 DRCNFFCKYCRTKEACEIENKD--LSKDEIFRIISVFKKLGIKKLRF---TGGEPFLRDD 72 Query: 101 V-PLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 + +I+ + G + I V TNG ++ + I+ I S ++ + + K Sbjct: 73 IFDIIEFADNIGIKNINVTTNGYLD-EEKIEKIAKSSLLSINISLDTLDKQK 123 >gi|326801125|ref|YP_004318944.1| molybdenum cofactor biosynthesis protein A [Sphingobacterium sp. 21] gi|326551889|gb|ADZ80274.1| molybdenum cofactor biosynthesis protein A [Sphingobacterium sp. 21] Length = 326 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 4/80 (5%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C T ++I ++ LTGGEP+++ D Sbjct: 19 DRCNLRCFYC-MPEESYDFTPMKHLMSATELEIIAGHFVRLGVNK--IRLTGGEPMVRSD 75 Query: 101 V-PLIQALNKRGFEIAVETN 119 +I L K + + TN Sbjct: 76 FGDIILRLAKLPVSLHITTN 95 >gi|321225483|gb|EFX50540.1| Putative regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 431 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GC++ + + C +C + + + + K R + + L I + + Sbjct: 4 AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63 Query: 87 YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120 GGEP + + +P + AL ++ G +I A++TNG Sbjct: 64 DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 104 >gi|307595591|ref|YP_003901908.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307550792|gb|ADN50857.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429] Length = 353 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 10/99 (10%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 LW + +C +C F Y+V++L LIE + GG Sbjct: 2 LWLLFTTGVCNLKCSYCGGSFEPHVVPWRVTYDVNKLKRLIE------GDADATVIFYGG 55 Query: 94 EPLLQVDVP--LIQALNKRGFEIAVETNGTIEPPQGIDW 130 EPLL + + R F I TNGT+ D+ Sbjct: 56 EPLLNPRFIMWAMDNIRARRFGIQ--TNGTLVNLLPRDY 92 >gi|269137629|ref|YP_003294329.1| coproporphyrinogen III oxidase and related Fe-S oxidoreductase [Edwardsiella tarda EIB202] gi|267983289|gb|ACY83118.1| coproporphyrinogen III oxidase and related Fe-S oxidoreductase [Edwardsiella tarda EIB202] gi|304557694|gb|ADM40358.1| Coproporphyrinogen III oxidase, oxygen-independent [Edwardsiella tarda FL6-60] Length = 376 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 10/102 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLT 91 L +C +CD + +G + VD LADL +E + + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHAQKGEIPQQAYVDHLLADLDQELPRVAGRPLSTLFIG 65 Query: 92 GGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124 GG P L L + L EI +E N GT+E Sbjct: 66 GGTPSLLSGEALQRLLDGVRARLPLAADAEITLEANPGTVEA 107 >gi|256828602|ref|YP_003157330.1| Radical SAM domain protein [Desulfomicrobium baculatum DSM 4028] gi|256577778|gb|ACU88914.1| Radical SAM domain protein [Desulfomicrobium baculatum DSM 4028] Length = 296 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 24/99 (24%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL--ADLIEEQWITGEKEGRYCV 89 CNL +C FC GT ++D ++ + + + + Sbjct: 20 CNL-----------RCDFC-------AGTTRRPASMDPAFFEQVLRQIAPLTGQVCLHVL 61 Query: 90 LTGGEPLLQVDVPLIQALNK-RGFEIAVETNGTIEPPQG 127 GEPLL I L G ++ + TN T+ P + Sbjct: 62 ---GEPLLHPHFGTIMDLCANAGIQVNLTTNATLLPEKS 97 >gi|204930326|ref|ZP_03221303.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320730|gb|EDZ05932.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322613042|gb|EFY09993.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617370|gb|EFY14270.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625638|gb|EFY22460.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322657597|gb|EFY53867.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|323210724|gb|EFZ95600.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215892|gb|EGA00625.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323227597|gb|EGA11753.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323250343|gb|EGA34229.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259752|gb|EGA43385.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268411|gb|EGA51883.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 431 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GC++ + + C +C + + + + K R + + L I + + Sbjct: 4 AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63 Query: 87 YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120 GGEP + + +P + AL ++ G +I A++TNG Sbjct: 64 DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 104 >gi|197251257|ref|YP_002148892.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214960|gb|ACH52357.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 431 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GC++ + + C +C + + + + K R + + L I + + Sbjct: 4 AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63 Query: 87 YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120 GGEP + + +P + AL ++ G +I A++TNG Sbjct: 64 DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 104 >gi|167553398|ref|ZP_02347147.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322153|gb|EDZ09992.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 431 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GC++ + + C +C + + + + K R + + L I + + Sbjct: 4 AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63 Query: 87 YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120 GGEP + + +P + AL ++ G +I A++TNG Sbjct: 64 DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 104 >gi|161617089|ref|YP_001591054.1| hypothetical protein SPAB_04922 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161366453|gb|ABX70221.1| hypothetical protein SPAB_04922 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 431 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GC++ + + C +C + + + + K R + + L I + + Sbjct: 4 AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63 Query: 87 YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120 GGEP + + +P + AL ++ G +I A++TNG Sbjct: 64 DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 104 >gi|119918298|ref|XP_609956.3| PREDICTED: pleckstrin and Sec7 domain containing 2-like [Bos taurus] gi|297491313|ref|XP_002698790.1| PREDICTED: pleckstrin and Sec7 domain containing 2-like [Bos taurus] gi|296472305|gb|DAA14420.1| pleckstrin and Sec7 domain containing 2-like [Bos taurus] Length = 1203 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 17/72 (23%) Query: 77 QWITGEKEGRYCVLTGG--------------EPLLQVDVPLIQALNKRGFEIAVETNGTI 122 + +TGG EP LQ LI AL IA +GT Sbjct: 275 AQPLAGRHSGPVTVTGGPKDVRGLPSQSHFKEPSLQPIDSLISALKATEARIA---SGTS 331 Query: 123 EPPQGIDWICVS 134 + + +D VS Sbjct: 332 QATKVLDGAAVS 343 >gi|29832258|ref|NP_826892.1| hypothetical protein SAV_5715 [Streptomyces avermitilis MA-4680] gi|29609377|dbj|BAC73427.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 723 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 18/99 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + + +D++A + + + E +L Sbjct: 21 CNLACDHCYVYEHEDQSW------QARPVLIAEETLDKVAHRLAAYTVDRKLESVSVILH 74 Query: 92 GGEPLL----------QVDVPLIQALNKRGFEIAVETNG 120 GGEPLL ++ L I TNG Sbjct: 75 GGEPLLVGPTRLRNICAQLRSVLDPLTTLDLRIH--TNG 111 >gi|75675412|ref|YP_317833.1| molybdenum cofactor biosynthesis protein A [Nitrobacter winogradskyi Nb-255] gi|123745726|sp|Q3STB0|MOAA_NITWN RecName: Full=Molybdenum cofactor biosynthesis protein A gi|74420282|gb|ABA04481.1| GTP cyclohydrolase subunit MoaA [Nitrobacter winogradskyi Nb-255] Length = 343 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ K +++L L G ++ R LTGGEPL+ Sbjct: 33 DRCDLRCFYCMSEDMTFL----PKADLLTLEELDRLCSAFIAKGVRKLR---LTGGEPLV 85 Query: 98 QVDV-PLIQALNKR---G--FEIAVETNGT 121 + +V LI++L++ G E+ + TNG+ Sbjct: 86 RRNVMSLIRSLSRHLQSGALKELTLTTNGS 115 >gi|134298390|ref|YP_001111886.1| radical SAM domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051090|gb|ABO49061.1| Radical SAM domain protein [Desulfotomaculum reducens MI-1] Length = 343 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 6/61 (9%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 ++ + +CR C ++ + +++QL LI++ + G K ++GGEP L D Sbjct: 16 NKCALKCRHCSSE---ASPSGQEHISINQLVALIDQAYQMGLKSF---TISGGEPFLHPD 69 Query: 101 V 101 + Sbjct: 70 I 70 >gi|331695126|ref|YP_004331365.1| Radical SAM domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326949815|gb|AEA23512.1| Radical SAM domain protein [Pseudonocardia dioxanivorans CB1190] Length = 542 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 13/103 (12%) Query: 31 GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G + C C F G + + + + ++ Sbjct: 84 GCPSDCGLCPEHKQHACLGIIEVNTNCNLDCPICFADSGHQPDGYSITLEQCERMLDVFV 143 Query: 80 TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNG 120 E E + +GGEP + + I + + + TNG Sbjct: 144 ESEGEAEVVMFSGGEPTIHKHILDFIDLAQAKPIRNVTLNTNG 186 >gi|298706473|emb|CBJ29460.1| conserved unknown protein [Ectocarpus siliculosus] Length = 369 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 8/92 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLT 91 N +R + +C +C G+ + N ++ L G + R LT Sbjct: 50 NYLRISLTERCNLRCVYC-MPEDGVDLQPQSKMINQQEILRLASMFVDAGVDKIR---LT 105 Query: 92 GGEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120 GGEPL++ D+P +++AL+ G + V TNG Sbjct: 106 GGEPLVRKDLPDIVRALSSLEGVRNVGVTTNG 137 >gi|222528908|ref|YP_002572790.1| radical SAM domain-containing protein [Caldicellulosiruptor bescii DSM 6725] gi|222455755|gb|ACM60017.1| Radical SAM domain protein [Caldicellulosiruptor bescii DSM 6725] Length = 368 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Query: 42 RLSAQCR-FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 R++ +C FC + ++ LI+ + E + TGGEP + D Sbjct: 25 RVTKRCNAFCKHCYGNSGEPFNNELTTREIKKLID--VYSDEFGVKKIFFTGGEPFARGD 82 Query: 101 V-PLIQALNKRGFEIAVETNGTI 122 + ++Q + EI + TNG++ Sbjct: 83 IVEILQYAYYKNMEILISTNGSL 105 >gi|194443254|ref|YP_002043195.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401917|gb|ACF62139.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 431 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GC++ + + C +C + + + + K R + + L I + + Sbjct: 4 AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63 Query: 87 YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120 GGEP + + +P + AL ++ G +I A++TNG Sbjct: 64 DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 104 >gi|94967207|ref|YP_589255.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis Ellin345] gi|94549257|gb|ABF39181.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis Ellin345] Length = 350 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 14/110 (12%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQL-----ADLIEEQW-ITGEKEGRYCVLTGGEPLL 97 +C C + GG N+ L DL+ + E + + + GG+PL+ Sbjct: 30 PLRCPGC---YAYEDNHLGGDTNLRSLTDYKGDDLVRRVLSLVDEHKPLHLSIVGGDPLV 86 Query: 98 -QVDVPLIQ-ALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145 ++ ++ L +RG + V T+ P W + P+ + I G Sbjct: 87 RYRELEIVLPQLAERGIHVQVVTSAFRPIPTQ--WATL-PRLRMTVSIDG 133 >gi|1016358|emb|CAA58794.1| pyruvate formate lyase activating protein homologue [Thermococcus litoralis DSM 5473] Length = 350 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 19/81 (23%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 VF FSGCN +C FC ++ Q G RY+ ++A I + G K Sbjct: 136 TVF--FSGCNF-----------RCAFC-QNWDISQYRVGLRYSPKEMAVKIAVAYAEGAK 181 Query: 84 EGRYCVLTGGEPLLQVDVPLI 104 + GGEP ++P I Sbjct: 182 NVNFV---GGEPT--PNLPFI 197 >gi|320450824|ref|YP_004202920.1| coenzyme PQQ synthesis protein PqqE [Thermus scotoductus SA-01] gi|320150993|gb|ADW22371.1| coenzyme PQQ synthesis protein PqqE [Thermus scotoductus SA-01] Length = 375 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 5/72 (6%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LI 104 CR C + G + ++ LIEE + + +LTGG+PL + D+ LI Sbjct: 24 ACRHC--RASAMPHPLPGELSTEEGLGLIEE--VATYRPKPLLLLTGGDPLARPDLLFLI 79 Query: 105 QALNKRGFEIAV 116 Q + G ++ + Sbjct: 80 QRARELGLKVGL 91 >gi|315647297|ref|ZP_07900410.1| Radical SAM domain protein [Paenibacillus vortex V453] gi|315277499|gb|EFU40828.1| Radical SAM domain protein [Paenibacillus vortex V453] Length = 391 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 32/102 (31%), Gaps = 11/102 (10%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GCNL + + K ++ + L+ E + L Sbjct: 52 GCNLRCKHCFEWNPDGFH-----HGFAKEEKKDEIDIPVVEKLLAETRERKSR----VFL 102 Query: 91 TGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GGEPL L + L K + TN I Q +D I Sbjct: 103 WGGEPLFYSKFDELAELLAKEDRYTTICTN-AILIEQKLDSI 143 >gi|262372689|ref|ZP_06065968.1| molybdenum cofactor biosynthesis protein A [Acinetobacter junii SH205] gi|262312714|gb|EEY93799.1| molybdenum cofactor biosynthesis protein A [Acinetobacter junii SH205] Length = 345 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 16/106 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QV 99 DR + +C +C + + ++ L+ ++ +TGGEPL+ Q Sbjct: 33 DRCNFKCVYC----MPEHPEWMKKQDLLSFESLLVFCTYMVKQGIENIRITGGEPLMRQG 88 Query: 100 DVPLI---QALNKRGF-EIAVETNGTIEPP-------QGIDWICVS 134 V I Q L K G I++ TNG G+D + +S Sbjct: 89 VVHFIRDLQQLKKIGLKRISMTTNGHYLAKYADQLKAAGLDDLNIS 134 >gi|85859249|ref|YP_461451.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB] gi|85722340|gb|ABC77283.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB] Length = 330 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 8/82 (9%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 D + C FC ++G + G R D++ I+ + TGGE L Sbjct: 17 DACNMNCAFC---YLGGETRLGNRFMPDDEVLRWID---WAVDNSIPAIRFTGGEATLHP 70 Query: 100 DVP-LIQALNKRGFEIAVETNG 120 V + RG I + TNG Sbjct: 71 QVEMFCYYAHLRGRYIVLNTNG 92 >gi|242398860|ref|YP_002994284.1| molybdenum cofactor biosynthesis protein [Thermococcus sibiricus MM 739] gi|242265253|gb|ACS89935.1| molybdenum cofactor biosynthesis protein [Thermococcus sibiricus MM 739] Length = 586 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 NL + +R + C +C F +G ++Q+ ++ TG Sbjct: 138 NLLNIVLTNRCNLSCWYC--FFYHKEGQPVYEPTLEQIRMMLRNAKSEEPIGANAVQFTG 195 Query: 93 GEPLLQVD 100 GEP L+ D Sbjct: 196 GEPSLRDD 203 >gi|206580011|ref|YP_002237132.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae 342] gi|288934092|ref|YP_003438151.1| radical SAM enzyme, Cfr family [Klebsiella variicola At-22] gi|290508289|ref|ZP_06547660.1| cfr family radical SAM enzyme [Klebsiella sp. 1_1_55] gi|254807185|sp|B5XNL2|RLMN_KLEP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|206569069|gb|ACI10845.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae 342] gi|288888821|gb|ADC57139.1| radical SAM enzyme, Cfr family [Klebsiella variicola At-22] gi|289777683|gb|EFD85680.1| cfr family radical SAM enzyme [Klebsiella sp. 1_1_55] Length = 388 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ TG + V+ G Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKTTGVRPITNVVMMG 181 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL ++ VP ++ L+ GF + + T+G + + D I V Sbjct: 182 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232 >gi|163749560|ref|ZP_02156807.1| hypothetical protein KT99_16109 [Shewanella benthica KT99] gi|161330670|gb|EDQ01607.1| hypothetical protein KT99_16109 [Shewanella benthica KT99] Length = 373 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 57/177 (32%), Gaps = 32/177 (18%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL-------ADLIEEQWITGEKEGRYC 88 Q + +C FC T G V ++ AD I TGE+ Sbjct: 107 CVSSQVGCALECTFCSTAQQGFN----RNLTVSEIIGQVWRVADFIGFIKKTGERPITNV 162 Query: 89 VLTG-GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAG 138 V+ G GEPLL + +P + L+ GF + + T+G + + D I V Sbjct: 163 VMMGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDV----A 218 Query: 139 CDLKIKGG-QELKLV-FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 + I EL+ V P P R+ + + Y Sbjct: 219 LAVSIHAANDELRDVLVPVNKKYPLQEFLASIRRYI-----AKSNANRGRVTVEYVM 270 >gi|152971378|ref|YP_001336487.1| ribosomal RNA large subunit methyltransferase N [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895973|ref|YP_002920709.1| ribosomal RNA large subunit methyltransferase N [Klebsiella pneumoniae NTUH-K2044] gi|262040254|ref|ZP_06013505.1| cfr family radical SAM enzyme [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330007776|ref|ZP_08306073.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. MS 92-3] gi|205829779|sp|A6TCD6|RLMN_KLEP7 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|150956227|gb|ABR78257.1| putative pyruvate formate lyase activating enzyme 2 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548291|dbj|BAH64642.1| putative pyruvate formate lyase activating enzyme 2 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259042363|gb|EEW43383.1| cfr family radical SAM enzyme [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328535320|gb|EGF61805.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. MS 92-3] Length = 388 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 13/111 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92 Q + +C+FC T G + Q+ A ++ TG + V+ G Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKTTGVRPITNVVMMG 181 Query: 93 -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133 GEPLL ++ VP ++ L+ GF + + T+G + + D I V Sbjct: 182 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232 >gi|83999861|emb|CAH60161.1| putative epimerase [Streptomyces tenjimariensis] Length = 327 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 19/99 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL S + + R D++ + + + R+ + Sbjct: 29 CNLSCAHCIVESSPR--------------RTERLTTDEVRTALS---VGRGRGKRHVTFS 71 Query: 92 GGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGI 128 GGE L +I G+ + VE+NG + I Sbjct: 72 GGEVFLFPAQMCEVIAFARGLGYVVDVESNGFWARSEKI 110 >gi|283779517|ref|YP_003370272.1| hopanoid biosynthesis associated radical SAM protein HpnH [Pirellula staleyi DSM 6068] gi|283437970|gb|ADB16412.1| hopanoid biosynthesis associated radical SAM protein HpnH [Pirellula staleyi DSM 6068] Length = 388 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 2/71 (2%) Query: 79 ITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKA 137 E + GGEPLL + ++ L R + + TN I+ +D S Sbjct: 67 AAEECGAPVVSIPGGEPLLHPQIGEIVAGLVARKKYVYLCTN-AIKLIDSLDKFKPSKYL 125 Query: 138 GCDLKIKGGQE 148 + + G +E Sbjct: 126 AFSVHLDGPRE 136 >gi|256839685|ref|ZP_05545194.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp. D13] gi|256738615|gb|EEU51940.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp. D13] Length = 301 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 6/86 (6%) Query: 36 SGREQDRLSAQCR-FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 + R R +C C T G Y++D++ IE++ + ++ GGE Sbjct: 76 TDRSLCRTCGRCAEVCPT---LAMEMSGREYSIDEVMREIEKETVFMDRSEGGVTFCGGE 132 Query: 95 PLLQV--DVPLIQALNKRGFEIAVET 118 PL V L+ G AV+T Sbjct: 133 PLSHPSDLVALLDRCGALGIHRAVDT 158 >gi|289578772|ref|YP_003477399.1| radical SAM protein [Thermoanaerobacter italicus Ab9] gi|289528485|gb|ADD02837.1| Radical SAM domain protein [Thermoanaerobacter italicus Ab9] Length = 298 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 21/95 (22%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 AVF FSGCNL +C FC ++ Q G +V++LA + G Sbjct: 54 AVF--FSGCNL-----------KCVFC-QNYEISQYQFGKFISVEELAQIFLNLQKQGAH 99 Query: 84 EGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAV 116 P + V + I ++G I + Sbjct: 100 NINLVT-----PTIHVFLIKEAILLAKRQGLHIPI 129 >gi|210621579|ref|ZP_03292715.1| hypothetical protein CLOHIR_00660 [Clostridium hiranonis DSM 13275] gi|210154702|gb|EEA85708.1| hypothetical protein CLOHIR_00660 [Clostridium hiranonis DSM 13275] Length = 183 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 22/97 (22%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWI 79 G AV GC C C T GG+ + ++ D I+ + + Sbjct: 19 GLRAV-VWTQGC-----------KHNCIGC--HNPQTHSTMGGKVVDTSEIIDKIKSKKL 64 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEI 114 L+GGEP LQ + + A+ + G + Sbjct: 65 QSG-----VTLSGGEPFLQPEAVGEIASAVKEMGMNV 96 >gi|168263142|ref|ZP_02685115.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205348268|gb|EDZ34899.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 431 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GC++ + + C +C + + + + K R + + L I + + Sbjct: 4 AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63 Query: 87 YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120 GGEP + + +P + AL ++ G +I A++TNG Sbjct: 64 DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 104 >gi|304315179|ref|YP_003850326.1| oxidoreductase [Methanothermobacter marburgensis str. Marburg] gi|302588638|gb|ADL59013.1| predicted oxidoreductase [Methanothermobacter marburgensis str. Marburg] Length = 303 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Query: 93 GEPLLQVDVP-LIQALNKRGFEIAVETNG 120 GEPLL D+ L+ +KR F + TNG Sbjct: 134 GEPLLYPDMDGLLAEFHKRNFTTFLVTNG 162 >gi|237729886|ref|ZP_04560367.1| coproporphyrinogen III oxidase [Citrobacter sp. 30_2] gi|226908492|gb|EEH94410.1| coproporphyrinogen III oxidase [Citrobacter sp. 30_2] Length = 382 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L+DL E +E + + Sbjct: 10 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDTEVAHARGREVKTIFIG 69 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L EI +E N GT+E + +D+ Sbjct: 70 GGTPSL-LSGPAMQTLLDGVRARLNLAEDAEITMEANPGTVEADRFVDY 117 >gi|197117742|ref|YP_002138169.1| pyranopterin triphosphate synthase [Geobacter bemidjiensis Bem] gi|197087102|gb|ACH38373.1| pyranopterin triphosphate synthase [Geobacter bemidjiensis Bem] Length = 326 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 8/92 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLT 91 N DR + +C +C G++ + + ++L + G ++ R +T Sbjct: 12 NYLRLSVTDRCNMRCSYC-MPAQGVEKLEHKEMLSYEELYRVAGACIAQGIEKIR---VT 67 Query: 92 GGEPLLQVDV-PLIQALNK-RGF-EIAVETNG 120 GGEPL++ + P ++ L + G E+ + TNG Sbjct: 68 GGEPLVRKGIVPFLERLARVPGLKELVLTTNG 99 >gi|291454104|ref|ZP_06593494.1| radical SAM domain-containing protein [Streptomyces albus J1074] gi|291357053|gb|EFE83955.1| radical SAM domain-containing protein [Streptomyces albus J1074] Length = 461 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 35/106 (33%), Gaps = 28/106 (26%) Query: 32 CNLWSGREQDRLSAQCRFC------DTDFVGIQGTKGGRYNVDQL-ADLIEEQWITGEKE 84 CNL CR+C DT V L AD I E Sbjct: 78 CNL-----------ACRYCYLYEGPDTG--WRDRPAAASDAVLALTADRIAEHAAAHRLP 124 Query: 85 GRYCVLTGGEPLLQ--VDVPLIQALNKR------GFEIAVETNGTI 122 VL GGEPLL + AL +R + ++TN T+ Sbjct: 125 AVSLVLHGGEPLLAGTDRLAAFAALVRRRVPAPTRVRVTLQTNATL 170 >gi|239982259|ref|ZP_04704783.1| hypothetical protein SalbJ_22704 [Streptomyces albus J1074] Length = 390 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 35/106 (33%), Gaps = 28/106 (26%) Query: 32 CNLWSGREQDRLSAQCRFC------DTDFVGIQGTKGGRYNVDQL-ADLIEEQWITGEKE 84 CNL CR+C DT V L AD I E Sbjct: 7 CNL-----------ACRYCYLYEGPDTG--WRDRPAAASDAVLALTADRIAEHAAAHRLP 53 Query: 85 GRYCVLTGGEPLLQ--VDVPLIQALNKR------GFEIAVETNGTI 122 VL GGEPLL + AL +R + ++TN T+ Sbjct: 54 AVSLVLHGGEPLLAGTDRLAAFAALVRRRVPAPTRVRVTLQTNATL 99 >gi|156554974|ref|XP_001602493.1| PREDICTED: similar to CG33048-PC [Nasonia vitripennis] Length = 572 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 26/114 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C +C G++ +K D++ + E G + R L Sbjct: 63 CNL-----------RCTYC-MPANGVELSKKEDILKTDEIIKIAELFINEGVNKIR---L 107 Query: 91 TGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG---TIEPP----QGIDWICVS 134 TGGEP ++ D + ++ L +G E +A+ TNG T + P G+D + +S Sbjct: 108 TGGEPTVRKDIIDIVAQLKSIKGLETLAMTTNGITLTRQLPKLQRAGLDLLNIS 161 >gi|124267188|ref|YP_001021192.1| hypothetical protein Mpe_A1999 [Methylibium petroleiphilum PM1] gi|205829632|sp|A2SHB8|RLMN_METPP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|124259963|gb|ABM94957.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 394 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 14/101 (13%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQ---GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 Q + CRFC T G T + + + T E+ V+ G Sbjct: 105 CISSQAGCAVGCRFCSTGHQGFSRNLSTGEIVAQLWHAEHQLRARLGTTERVISNVVMMG 164 Query: 93 -GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123 GEPL Q L+ AL G+ + V T+G + Sbjct: 165 MGEPL-QNYAALLPALRVMLDDHGYGLSRRRVTVSTSGVVP 204 >gi|321447815|gb|EFX61189.1| hypothetical protein DAPPUDRAFT_305942 [Daphnia pulex] Length = 158 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 12/89 (13%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 N +R + +C++C G+ TK ++ + G + R LT Sbjct: 61 NYLRISLTERCNLRCQYC-MPAGGVDLTTKDKLLTTSEIIKIASAFVEEGVDKIR---LT 116 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETN 119 GGEP ++ D+ L+ G ET+ Sbjct: 117 GGEPSIRPDIVELV------GIVTYCETS 139 >gi|317490251|ref|ZP_07948739.1| radical SAM superfamily protein [Eggerthella sp. 1_3_56FAA] gi|325833449|ref|ZP_08165898.1| radical SAM domain protein [Eggerthella sp. HGA1] gi|316910745|gb|EFV32366.1| radical SAM superfamily protein [Eggerthella sp. 1_3_56FAA] gi|325485373|gb|EGC87842.1| radical SAM domain protein [Eggerthella sp. HGA1] Length = 415 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 37/116 (31%), Gaps = 26/116 (22%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL + R D LAD+ Sbjct: 84 TQRCNLACAGCYSLDEHRNRLAD----------------APLADMKRAVEGLAAAGLSQL 127 Query: 89 VLTGGEPLLQVDVPLI--QALNKRGF-EIAVETNGTI-------EPPQGIDWICVS 134 +++GGEPLL+ D+P I A G + V +NGT +D + VS Sbjct: 128 IISGGEPLLREDLPDIVEHAKRACGIASVTVLSNGTRMTEEALERLAPNVDCVSVS 183 >gi|302878328|ref|YP_003846892.1| Radical SAM domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581117|gb|ADL55128.1| Radical SAM domain protein [Gallionella capsiferriformans ES-2] Length = 367 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 25/164 (15%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDVP-L 103 +C FC D++G + R ++ + + + G + + + G GEP+L D+ + Sbjct: 51 RCTFCAVDYIGYKPV---RLSLPAIERTLVQM---GARGVKSVMFAGEGEPMLHKDIDKM 104 Query: 104 IQALNKRGFEIAVETNGTI-------EPPQGIDWICVSPKAGCDLKIKGGQELK-LVFPQ 155 + A + G + A+ TN ++ + WI S AG K F Q Sbjct: 105 VIAAHAAGIDTAMTTNASVLSDAFVENALPLMSWIKASFNAGTAPTYARIHGTKERDFDQ 164 Query: 156 VNVSPENYIGFDFER---------FSLQPMDGPFLEENTNLAIS 190 V + + + L P + +E L Sbjct: 165 VVANLKRLVEARNRHGYSCVLGAQIVLLPENAAEVETLARLCRD 208 >gi|229013933|ref|ZP_04171059.1| Molybdenum cofactor biosynthesis protein A [Bacillus mycoides DSM 2048] gi|228747353|gb|EEL97230.1| Molybdenum cofactor biosynthesis protein A [Bacillus mycoides DSM 2048] Length = 339 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 16/76 (21%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L + G ++ R LTG Sbjct: 24 DRCNLRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKVFVSIGVRKIR---LTG 76 Query: 93 GEPLLQVDV-PLIQAL 107 GEPLL+ D+ LI+ L Sbjct: 77 GEPLLRKDLTKLIERL 92 >gi|229062411|ref|ZP_04199727.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH603] gi|228716882|gb|EEL68569.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH603] Length = 339 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 16/76 (21%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L + G ++ R LTG Sbjct: 24 DRCNLRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKVFVSIGVRKIR---LTG 76 Query: 93 GEPLLQVDV-PLIQAL 107 GEPLL+ D+ LI+ L Sbjct: 77 GEPLLRKDLTKLIERL 92 >gi|229135567|ref|ZP_04264350.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BDRD-ST196] gi|228647909|gb|EEL03961.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BDRD-ST196] Length = 339 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 16/76 (21%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L + G ++ R LTG Sbjct: 24 DRCNLRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKVFVSIGVRKIR---LTG 76 Query: 93 GEPLLQVDV-PLIQAL 107 GEPLL+ D+ LI+ L Sbjct: 77 GEPLLRKDLTKLIERL 92 >gi|229169460|ref|ZP_04297166.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH621] gi|228614018|gb|EEK71137.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH621] Length = 339 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 16/76 (21%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L + G ++ R LTG Sbjct: 24 DRCNLRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKVFVSIGVRKIR---LTG 76 Query: 93 GEPLLQVDV-PLIQAL 107 GEPLL+ D+ LI+ L Sbjct: 77 GEPLLRKDLTKLIERL 92 >gi|256821137|ref|YP_003142336.1| Radical SAM domain-containing protein [Anaerococcus prevotii DSM 20548] gi|256799117|gb|ACV29771.1| Radical SAM domain protein [Anaerococcus prevotii DSM 20548] Length = 447 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 29/105 (27%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLADLIEEQWITGEKEGRY 87 GCNL C++C G +G G + D I+ + Sbjct: 99 QGCNL-----------ACKYC----FGDEGRYNHTGFMDSDTAKQSIDFLIENTNSDKLN 143 Query: 88 CVLTGGEPLLQVDVPLIQAL----------NKRGFEIAVETNGTI 122 + GGEPLL LI+ + NK F ++ TNGT+ Sbjct: 144 IIFFGGEPLL--RFDLIKEIVNYCKIKESTNKLKFYFSMTTNGTL 186 >gi|167622085|ref|YP_001672379.1| molybdenum cofactor biosynthesis protein A [Shewanella halifaxensis HAW-EB4] gi|167352107|gb|ABZ74720.1| molybdenum cofactor biosynthesis protein A [Shewanella halifaxensis HAW-EB4] Length = 328 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C + GR +V L +L E + LTGGEPL++ D Sbjct: 21 DRCDFRCVYC----MSEDPCFLGREHVLSLEELAWVAQAFTELGVKKIRLTGGEPLVRTD 76 Query: 101 VP-LIQAL-NKRGF-EIAVETNGT 121 L++ L G E+++ TNG+ Sbjct: 77 CDQLVKLLGKLPGLEELSMTTNGS 100 >gi|126665833|ref|ZP_01736814.1| molybdenum cofactor biosynthesis protein A [Marinobacter sp. ELB17] gi|126629767|gb|EBA00384.1| molybdenum cofactor biosynthesis protein A [Marinobacter sp. ELB17] Length = 330 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 6/91 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR +C +C + T R V L ++ E LTG Sbjct: 15 NYVRLSVTDRCDFRCVYC----MAEDMTFLPRQQVLTLEEIARLAHNFVELGTEKIRLTG 70 Query: 93 GEPLLQVDV-PLIQALNKRGFE-IAVETNGT 121 GEPL++ + L+ + G A+ TNG+ Sbjct: 71 GEPLVRRGIVDLVTEIGGYGLRDFAMTTNGS 101 >gi|15678994|ref|NP_276111.1| pyruvate formate-lyase activating enzyme related protein [Methanothermobacter thermautotrophicus str. Delta H] gi|2622075|gb|AAB85472.1| pyruvate formate-lyase activating enzyme related protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 304 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 8/82 (9%) Query: 46 QCRFCD----TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--V 99 +C +C+ + + G ++LAD I + TGGEP + Sbjct: 55 RCAYCNAYRISQYPHSGWIYRGHVEAEELADEAI-TAIKSHERISNISFTGGEPSIHTPY 113 Query: 100 DVPLIQALNKR-GFEIAVETNG 120 L++ + + + + TNG Sbjct: 114 IEELVRRVREEIDVSVILATNG 135 >gi|121603727|ref|YP_981056.1| putative oxygen-independent coproporphyrinogen III oxidase [Polaromonas naphthalenivorans CJ2] gi|120592696|gb|ABM36135.1| putative oxygen-independent coproporphyrinogen III oxidase [Polaromonas naphthalenivorans CJ2] Length = 396 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 10/101 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91 L +C +CD + G + +D L +E + + + Sbjct: 22 PLSLYVHLPWCIKKCPYCDFNSHEAPGELPEQRYIDALVADLEASLPLVWGRTVHSIFIG 81 Query: 92 GGEPLL---QVDVPLI-----QALNKRGFEIAVETN-GTIE 123 GG P L Q L+ + + EI +E N GT E Sbjct: 82 GGTPSLFSPQAIDRLLGDIRARLRLEADCEITLEANPGTFE 122 >gi|110633911|ref|YP_674119.1| molybdenum cofactor biosynthesis protein A [Mesorhizobium sp. BNC1] gi|110284895|gb|ABG62954.1| GTP cyclohydrolase subunit MoaA [Chelativorans sp. BNC1] Length = 334 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ K ++++L L G + R LTGGEPL+ Sbjct: 23 DRCDFRCVYCMAEDMHFL----PKKDLLSLEELDRLCTVFIEKGVRRLR---LTGGEPLV 75 Query: 98 QVDV-PLIQALNKRGFEIAVE-----TNGT 121 + ++ L++ L++ A+E TNG+ Sbjct: 76 RKNIMHLMRQLSRHLKSGALEELTLTTNGS 105 >gi|332035078|gb|EGI71594.1| radical SAM family enzyme [Pseudoalteromonas haloplanktis ANT/505] Length = 378 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 10/109 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91 L +C +CD + G +G V L D ++ + + + + Sbjct: 5 PLSLYVHVPWCVQKCPYCDFNSHGQKGEIPEAEYVQHLIDDLKADLHLVQGRKIHSIFIG 64 Query: 92 GGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEPPQGIDWI 131 GG P L + L + EI +E N GT+E + D++ Sbjct: 65 GGTPSLLTGAAYTRLLNEVDNLIGLEEHCEITLEANPGTVETGRFKDYV 113 >gi|328544428|ref|YP_004304537.1| Radical SAM:Molybdenum cofactor synthesis-like protein [Polymorphum gilvum SL003B-26A1] gi|326414170|gb|ADZ71233.1| Radical SAM:Molybdenum cofactor synthesis-like protein [Polymorphum gilvum SL003B-26A1] Length = 353 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ K +++L L G K+ R LTGGEPL+ Sbjct: 42 DRCDFRCVYCMAEDMTFL----PKREVLTLEELDRLCSAFIEKGVKKLR---LTGGEPLV 94 Query: 98 QVDV-PLIQAL---NKRGF--EIAVETNGT 121 + ++ LI++L G E+ V TNG+ Sbjct: 95 RKNIMSLIRSLSRHLASGALDELTVTTNGS 124 >gi|294783541|ref|ZP_06748865.1| hypothetical protein HMPREF0400_01535 [Fusobacterium sp. 1_1_41FAA] gi|294480419|gb|EFG28196.1| hypothetical protein HMPREF0400_01535 [Fusobacterium sp. 1_1_41FAA] Length = 298 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 5/89 (5%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N++ +C FC + T+ ++ L ++I+ E +L G Sbjct: 4 NVYYFNINYLCDNKCIFCYSHNTNNLKTE----SIITLKEIIKTINKYKISEKDRLILNG 59 Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNG 120 GEPLL ++ ++ ++ E + TNG Sbjct: 60 GEPLLHKEINEILNYISNTNIETLIFTNG 88 >gi|159036544|ref|YP_001535797.1| FO synthase [Salinispora arenicola CNS-205] gi|157915379|gb|ABV96806.1| Radical SAM domain protein [Salinispora arenicola CNS-205] Length = 836 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 17/79 (21%) Query: 46 QCRFCDTDFVGIQGTKGG-RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-- 102 CRFC F R +VDQ+AD E+ W+ G E L GG + +P Sbjct: 541 GCRFC--AFAQRDRDADAYRLSVDQIADRAEQAWLAGASE---VCLQGG---IDPRLPVT 592 Query: 103 ----LIQALNKR--GFEIA 115 L++A+ R G + Sbjct: 593 AYADLVRAIKARVPGMHVH 611 >gi|114800233|ref|YP_759790.1| molybdenum cofactor biosynthesis protein MoaA [Hyphomonas neptunium ATCC 15444] gi|114740407|gb|ABI78532.1| molybdenum cofactor biosynthesis protein MoaA [Hyphomonas neptunium ATCC 15444] Length = 343 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 5/71 (7%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C K +++L + + G + R +TGGEPL++ D Sbjct: 30 DRCDLRCTYC-MAEQMTFLPKKDLLTLEELESVADAFIRRGVTKIR---ITGGEPLVRRD 85 Query: 101 V-PLIQALNKR 110 + L L R Sbjct: 86 IGTLFDRLGSR 96 >gi|13470752|ref|NP_102321.1| molybdenum cofactor biosynthesis protein A [Mesorhizobium loti MAFF303099] gi|24212004|sp|Q98MK6|MOAA_RHILO RecName: Full=Molybdenum cofactor biosynthesis protein A gi|14021495|dbj|BAB48107.1| molybdopterin biosynthetic protein A [Mesorhizobium loti MAFF303099] Length = 331 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 22/93 (23%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ K ++++L L G + R LTGGEPL+ Sbjct: 20 DRCDFRCTYCMAEDMAFL----PKKDLLSLEELDRLCSVFIEKGVRRLR---LTGGEPLV 72 Query: 98 QVDV-PLIQAL---NKRGFEIAVE-----TNGT 121 + ++ L++ L G A+E TNG+ Sbjct: 73 RKNIMHLVRQLSRHLDSG---ALEELTLTTNGS 102 >gi|22027536|ref|NP_005934.2| molybdenum cofactor biosynthesis protein 1 isoform 1 [Homo sapiens] gi|3559907|emb|CAA11897.1| MOCS1A protein [Homo sapiens] gi|14971423|emb|CAC44527.1| MOCS1A enzyme [Homo sapiens] gi|56204713|emb|CAI20014.1| molybdenum cofactor synthesis 1 [Homo sapiens] gi|119624407|gb|EAX04002.1| molybdenum cofactor synthesis 1, isoform CRA_d [Homo sapiens] Length = 385 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C + K +++ L G + R LT Sbjct: 80 CNL-----------RCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGIDKIR---LT 125 Query: 92 GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120 GGEPL++ D V ++ L + G I V TNG Sbjct: 126 GGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNG 157 >gi|300856784|ref|YP_003781768.1| putative Fe-S oxidoreductase [Clostridium ljungdahlii DSM 13528] gi|300436899|gb|ADK16666.1| predicted Fe-S oxidoreductase [Clostridium ljungdahlii DSM 13528] Length = 345 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 32/108 (29%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR-- 86 + CN +C+ C + G + +++ +++E+ + Sbjct: 16 TAKCN-----------QRCKHC-----YQECYAGKELSFNEILNILEQYKDLLRLYSKSK 59 Query: 87 -------YCVLTGGEPLLQVDVPLIQALN-----KRGFEIAVETNGTI 122 + +TGGEP + D +Q L K+ F + TNG+ Sbjct: 60 NKDFIRGHINITGGEPFTRKD--FLQILKVFSKNKKYFSFGILTNGSY 105 >gi|296113214|ref|YP_003627152.1| oxygen-independent coproporphyrinogen III oxidase-like protein YggW [Moraxella catarrhalis RH4] gi|295920908|gb|ADG61259.1| oxygen-independent coproporphyrinogen III oxidase-like protein YggW [Moraxella catarrhalis RH4] gi|326560207|gb|EGE10595.1| oxygen-independent coproporphyrinogen III oxidase-like protein YggW [Moraxella catarrhalis 7169] gi|326562766|gb|EGE13062.1| oxygen-independent coproporphyrinogen III oxidase-like protein YggW [Moraxella catarrhalis 103P14B1] gi|326564945|gb|EGE15147.1| oxygen-independent coproporphyrinogen III oxidase-like protein YggW [Moraxella catarrhalis 46P47B1] gi|326567876|gb|EGE17977.1| oxygen-independent coproporphyrinogen III oxidase-like protein YggW [Moraxella catarrhalis 12P80B1] gi|326573317|gb|EGE23285.1| oxygen-independent coproporphyrinogen III oxidase-like protein YggW [Moraxella catarrhalis 101P30B1] gi|326575787|gb|EGE25710.1| oxygen-independent coproporphyrinogen III oxidase-like protein YggW [Moraxella catarrhalis CO72] gi|326576867|gb|EGE26773.1| oxygen-independent coproporphyrinogen III oxidase-like protein YggW [Moraxella catarrhalis O35E] Length = 391 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 10/111 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L+D + +Q + ++ + Sbjct: 12 PLSLYIHIPWCVKKCPYCDFNSHALPSQVPFENYIEALLSDAVSQQSLVSNRQIDTVFIG 71 Query: 92 GGEPLLQVDVP---LIQALN-----KRGFEIAVETN-GTIEPPQGIDWICV 133 GG P L L L EI +E N GT+E +++ + Sbjct: 72 GGTPSLLPIESFKRLFDGLRLIYDFAPTCEITLEANPGTLEHSPFDEYLTI 122 >gi|293401191|ref|ZP_06645335.1| pyruvate formate-lyase activating enzyme [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305317|gb|EFE46562.1| pyruvate formate-lyase activating enzyme [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 298 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 6/72 (8%) Query: 50 CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQAL 107 C T + Y V+++ + + + + ++EG ++GGEP LQ + +++ Sbjct: 89 CPTRAMQFDS---RSYTVEEVMEELLKDEVFFQREGG-ITISGGEPFLQHEFLIEILKEC 144 Query: 108 NKRGFEIAVETN 119 K+ A+E++ Sbjct: 145 KKKQLHTAIESS 156 >gi|289618459|emb|CBI55183.1| unnamed protein product [Sordaria macrospora] Length = 771 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 19/94 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + ++ L G + R LT Sbjct: 138 CNL-----------RCLYCMPEEGVPLSPPKELLTTPEIVLLSSLFVSQGVTKIR---LT 183 Query: 92 GGEPLLQVDV-PLIQ---ALNKRGF-EIAVETNG 120 GGEP ++ D+ PLIQ AL G E+ + TNG Sbjct: 184 GGEPTVRRDIVPLIQQIGALRAHGLRELCLTTNG 217 >gi|300022957|ref|YP_003755568.1| lysine 2,3-aminomutase YodO family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299524778|gb|ADJ23247.1| lysine 2,3-aminomutase YodO family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 356 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 3/50 (6%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 CRFC + G + D LA + +I +LTGG+PL Sbjct: 109 CRFC-FRREMVGPANGETLSADDLAAAVA--YIRATPAVWEVILTGGDPL 155 >gi|240144502|ref|ZP_04743103.1| radical SAM domain protein [Roseburia intestinalis L1-82] gi|257203489|gb|EEV01774.1| radical SAM domain protein [Roseburia intestinalis L1-82] Length = 457 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 27/103 (26%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD--QLADLIEEQWITGEKEGRY-- 87 CNL C++C +G GR + ++ + I R Sbjct: 108 CNL-----------ACQYC----FAEEGEYHGRRALMSFEVGKKALDFLIANSGNRRNLE 152 Query: 88 CVLTGGEPLL--QVDVPLI------QALNKRGFEIAVETNGTI 122 GGEPL+ QV L+ + L+ + F + TNG + Sbjct: 153 VDFFGGEPLMNWQVVKDLVAYGREQEKLHDKNFRFTLTTNGVL 195 >gi|170698510|ref|ZP_02889581.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia ambifaria IOP40-10] gi|170136594|gb|EDT04851.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia ambifaria IOP40-10] Length = 404 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 17/106 (16%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87 L +C +CD KG R+ + D + ++ Sbjct: 28 PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPETEYLDALRADLEQALPLVWGRQVHT 84 Query: 88 CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124 + GG P L L + L EI +E N GT E Sbjct: 85 VFIGGGTPSLLSASGLDRLLSDVRALLPLDADAEITLEANPGTFEA 130 >gi|163857994|ref|YP_001632292.1| molybdenum cofactor biosynthesis protein A [Bordetella petrii DSM 12804] gi|163261722|emb|CAP44024.1| molybdenum cofactor biosynthesis protein A [Bordetella petrii] Length = 370 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 12/76 (15%) Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 DR + +C +C D ++ + + + +++ L G ++ R LTGGE Sbjct: 47 DRCNFRCTYCMPREVFDGNYAFM--PQSALLSFEEITRLARLFAQLGVEKIR---LTGGE 101 Query: 95 PLLQVDVP-LIQALNK 109 PLL+ ++ LI L + Sbjct: 102 PLLRKNIESLIAMLAE 117 >gi|154150501|ref|YP_001404119.1| radical SAM domain-containing protein [Candidatus Methanoregula boonei 6A8] gi|153999053|gb|ABS55476.1| Radical SAM domain protein [Methanoregula boonei 6A8] Length = 356 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 8/81 (9%) Query: 42 RLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 R +C C +V G + D+ +++ TG VL+GGEPL++ D Sbjct: 18 RCPLKCSHC---YVDAGTREAPGVLSTDEALGVLDRIRATG---TPVVVLSGGEPLMRDD 71 Query: 101 VPLIQA-LNKRGFEIAVETNG 120 + I RG + + T+G Sbjct: 72 LCTIARYGTDRGLRMVMGTSG 92 >gi|87198947|ref|YP_496204.1| GTP cyclohydrolase subunit MoaA [Novosphingobium aromaticivorans DSM 12444] gi|87134628|gb|ABD25370.1| GTP cyclohydrolase subunit MoaA [Novosphingobium aromaticivorans DSM 12444] Length = 339 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 9/86 (10%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C K ++++L L G ++ R LTGGEPL++ D Sbjct: 29 DRCDLRCAYC-MPERMEFLPKAEVLSLEELHRLSLHFIARGVRKIR---LTGGEPLVRRD 84 Query: 101 -VPLIQALNKR---GF-EIAVETNGT 121 V L++AL ++ G E+ + TNGT Sbjct: 85 MVDLVRALGRKLGDGLDELTMTTNGT 110 >gi|15920846|ref|NP_376515.1| hypothetical protein ST0626 [Sulfolobus tokodaii str. 7] gi|15621630|dbj|BAB65624.1| 350aa long conserved hypothetical protein [Sulfolobus tokodaii str. 7] Length = 350 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 10/89 (11%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 LW + + C +C F G +Y++ +L + IE + + + GG Sbjct: 2 LWLVLTTGKCNLTCDYCGGSFPSHIVPWGVKYDIQKLKNAIE------KDQNATVIFYGG 55 Query: 94 EPLLQVD--VPLIQALNKRGFEIAVETNG 120 EPL+ + ++ + + + I TNG Sbjct: 56 EPLMNPKFIMQVMDNIKAKRWGIQ--TNG 82 >gi|326570282|gb|EGE20327.1| oxygen-independent coproporphyrinogen III oxidase-like protein YggW [Moraxella catarrhalis BC8] gi|326571019|gb|EGE21043.1| oxygen-independent coproporphyrinogen III oxidase-like protein YggW [Moraxella catarrhalis BC7] Length = 391 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 10/111 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L+D + +Q + ++ + Sbjct: 12 PLSLYIHMPWCVKKCPYCDFNSHALPSQVPFENYIEALLSDAVSQQSLVSNRQIDTVFIG 71 Query: 92 GGEPLLQVDVP---LIQALN-----KRGFEIAVETN-GTIEPPQGIDWICV 133 GG P L L L EI +E N GT+E +++ + Sbjct: 72 GGTPSLLPIESFKRLFDGLRLIYDFAPTCEITLEANPGTLEHSPFDEYLTI 122 >gi|302916765|ref|XP_003052193.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256733132|gb|EEU46480.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 648 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 19/94 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + G ++ L G + R LT Sbjct: 93 CNL-----------RCVYCMPEEGVPLSPNRGLLTTPEIVLLSSVFVSQGVSKIR---LT 138 Query: 92 GGEPLLQVD-VPLIQ---ALNKRGF-EIAVETNG 120 GGEP ++ D +PL++ L + G EI + TNG Sbjct: 139 GGEPTVRRDILPLMRQIGELRRHGLKEICITTNG 172 >gi|197249679|ref|YP_002148018.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197213382|gb|ACH50779.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 378 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L DL + +E + + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLDADVVWAQGREVKTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L EI +E N GT+E + ID+ Sbjct: 66 GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113 >gi|329998595|ref|ZP_08303179.1| radical SAM domain protein [Klebsiella sp. MS 92-3] gi|328538614|gb|EGF64714.1| radical SAM domain protein [Klebsiella sp. MS 92-3] Length = 197 Score = 35.4 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L DL + +E + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLQADAHYAQGREIGTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L G EI +E N GT+E + +D+ Sbjct: 66 GGTPSL-LSGPAMQTLLDGVRACLPLAAGAEITMEANPGTVEADRFVDY 113 >gi|291563040|emb|CBL41856.1| ribonucleoside-triphosphate reductase class III activase subunit [butyrate-producing bacterium SS3/4] Length = 164 Score = 35.4 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 23/88 (26%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGI--QGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GC S C C G ++L + + WI+G Sbjct: 23 LAGC-----------SHACPGCQNPVTWDVKGGLPFDEAAKEELFEALSPAWISG----- 66 Query: 87 YCVLTGGEPLLQVDVP----LIQALNKR 110 +GG+PL + LI+ ++K+ Sbjct: 67 -VTFSGGDPLHWQNRKETGNLIEEIHKK 93 >gi|284161609|ref|YP_003400232.1| radical SAM protein [Archaeoglobus profundus DSM 5631] gi|284011606|gb|ADB57559.1| Radical SAM domain protein [Archaeoglobus profundus DSM 5631] Length = 337 Score = 35.4 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 22/114 (19%) Query: 47 CRFCDT--DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102 C +C + G V ++ D IEE + +TGGEPLL++D V Sbjct: 43 CFYCPISEERRGKDVVFANEREVKRIEDAIEEANAMSAEG---IAITGGEPLLKLDRVVE 99 Query: 103 LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156 ++ + + + K K+K E++ P++ Sbjct: 100 FLKTFKDLHSHL---------------YTAIPAKESVLSKLKHLDEIRFHPPEL 138 >gi|298527846|ref|ZP_07015250.1| Radical SAM domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511498|gb|EFI35400.1| Radical SAM domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 212 Score = 35.4 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 16/93 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 F GCNL +C C + V ++E+ Sbjct: 33 FGGCNL-----------RCPTC---HNASFAWHPESFPVLDCLGVLEQVQR-NRNWLEGL 77 Query: 89 VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120 VLTGGE + L+ L+ I ++TNG Sbjct: 78 VLTGGEVTILPGFDSLLHDLSSLNIPIKLDTNG 110 >gi|149917579|ref|ZP_01906076.1| Molybdenum cofactor biosynthesis protein A (moaA) [Plesiocystis pacifica SIR-1] gi|149821642|gb|EDM81040.1| Molybdenum cofactor biosynthesis protein A (moaA) [Plesiocystis pacifica SIR-1] Length = 664 Score = 35.4 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 38/120 (31%), Gaps = 30/120 (25%) Query: 27 CRFS-GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 R + CN C FC T G Y + ++ + K Sbjct: 27 VRLTFDCN-----------DNCIFC-----LDSHTHNGTYRSRE--EVKAQILDGRRKGA 68 Query: 86 RYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG---------TIEPPQGIDWICVS 134 +L+GGEP + D ++ G+ I TNG T +G+ I S Sbjct: 69 ERLILSGGEPTIHPDYAQFVRLGRLAGYKRIQTVTNGRLFAYKDFLTRCIDEGLGEITFS 128 >gi|116252458|ref|YP_768296.1| molybdenum cofactor biosynthesis protein A [Rhizobium leguminosarum bv. viciae 3841] gi|115257106|emb|CAK08200.1| putative molybdenum cofactor biosynthesis protein A [Rhizobium leguminosarum bv. viciae 3841] Length = 328 Score = 35.4 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 9/86 (10%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C K +++L L G ++ R LTGGEPL++ + Sbjct: 18 DRCDFRCTYC-MAENMTFLPKKDLLTLEELDRLCSAFIAKGVRKIR---LTGGEPLVRKN 73 Query: 101 VP-LIQALNKR---GF-EIAVETNGT 121 + L++ L ++ G E+ + TNG+ Sbjct: 74 IMYLVRQLGQKIGSGLDELTLTTNGS 99 >gi|307316447|ref|ZP_07595890.1| coenzyme PQQ biosynthesis protein E [Sinorhizobium meliloti AK83] gi|306897645|gb|EFN28388.1| coenzyme PQQ biosynthesis protein E [Sinorhizobium meliloti AK83] Length = 375 Score = 35.4 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 6/80 (7%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R C +C Q + ++ + + G L+GGEP + D+ Sbjct: 31 RCPLACPYCSNPIALTQA--KEELSTEEWTGVFAQAADLGVLHLH---LSGGEPAARRDL 85 Query: 102 -PLIQALNKRGFEIAVETNG 120 L QA + G + T+G Sbjct: 86 VELTQAASSLGLYTNLITSG 105 >gi|255505729|ref|ZP_05347815.3| radical SAM domain protein [Bryantella formatexigens DSM 14469] gi|255266114|gb|EET59319.1| radical SAM domain protein [Bryantella formatexigens DSM 14469] Length = 477 Score = 35.4 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 36/107 (33%) Query: 32 CNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRY--NVDQLADLIEEQWITGEKEGR 86 CN+ D SA C C G + +D + +I + G Sbjct: 138 CNVPWAILLDPTSACNMHCVGC------WAAEYGHKLNLTLDDIDSIIRQGKELGIY--- 188 Query: 87 YCVLTGGEPL-----------LQVDVPLIQALNKRGFEIAVETNGTI 122 + + TGGEPL + D + TNGT+ Sbjct: 189 FYIYTGGEPLVRKKDIIKLCEMHPDCEFLSF-----------TNGTL 224 >gi|206561361|ref|YP_002232126.1| coproporphyrinogen III oxidase [Burkholderia cenocepacia J2315] gi|198037403|emb|CAR53338.1| putative coproporphyrinogen III oxidase family protein [Burkholderia cenocepacia J2315] Length = 404 Score = 35.4 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 17/106 (16%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87 L +C +CD KG R+ + D + ++ Sbjct: 28 PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPETEYLDALRADLEQALPLVWGRQVHT 84 Query: 88 CVLTGGEPLLQVDVPL------IQAL--NKRGFEIAVETN-GTIEP 124 + GG P L L ++AL EI +E N GT E Sbjct: 85 VFIGGGTPSLLSAAGLDRMLSDVRALLPLDADAEITLEANPGTFEA 130 >gi|149920706|ref|ZP_01909171.1| Molybdenum cofactor biosynthesis protein A (moaA) [Plesiocystis pacifica SIR-1] gi|149818493|gb|EDM77942.1| Molybdenum cofactor biosynthesis protein A (moaA) [Plesiocystis pacifica SIR-1] Length = 664 Score = 35.4 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 38/120 (31%), Gaps = 30/120 (25%) Query: 27 CRFS-GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 R + CN C FC T G Y + ++ + K Sbjct: 27 VRLTFDCN-----------DNCIFC-----LDSHTHNGTYRSRE--EVKAQILDGRRKGA 68 Query: 86 RYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG---------TIEPPQGIDWICVS 134 +L+GGEP + D ++ G+ I TNG T +G+ I S Sbjct: 69 ERLILSGGEPTIHPDYAQFVRLGRLAGYKRIQTVTNGRLFAYKDFLTRCIDEGLGEITFS 128 >gi|289804233|ref|ZP_06534862.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 127 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77 Query: 99 VDVPLIQALNKRG-----FEIAVETNGTIEPPQGIDW 130 D + G +IAV TNG +W Sbjct: 78 RD--FTDIIAAVGENDAIRQIAVTTNGYRLARDAANW 112 >gi|224582615|ref|YP_002636413.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|254811547|sp|C0PWZ0|MOAA_SALPC RecName: Full=Molybdenum cofactor biosynthesis protein A gi|224467142|gb|ACN44972.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 329 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77 Query: 99 VDVPLIQALNKRG-----FEIAVETNGTIEPPQGIDW 130 D + G +IAV TNG +W Sbjct: 78 RD--FTDIIAAVGENDAIRQIAVTTNGYRLARDAANW 112 >gi|213616116|ref|ZP_03371942.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 248 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77 Query: 99 VDVPLIQALNKRG-----FEIAVETNGTIEPPQGIDW 130 D + G +IAV TNG +W Sbjct: 78 RD--FTDIIAAVGENDAIRQIAVTTNGYRLARDAANW 112 >gi|213584190|ref|ZP_03366016.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 214 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77 Query: 99 VDVPLIQALNKRG-----FEIAVETNGTIEPPQGIDW 130 D + G +IAV TNG +W Sbjct: 78 RD--FTDIIAAVGENDAIRQIAVTTNGYRLARDAANW 112 >gi|182439559|ref|YP_001827278.1| hypothetical protein SGR_5766 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178468075|dbj|BAG22595.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 779 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 36/113 (31%), Gaps = 24/113 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYC 88 C+L A + T+ + + + A + E T Sbjct: 19 CDLACDHCYVYEHADQSW---------STRPRTISDEAISWTARRLAEHATTHALPSVTV 69 Query: 89 VLTGGEPLLQ-------VDVPLIQALN---KRGFEIAVETNGTIEPPQGIDWI 131 +L GGEPLL V L ALN + I TNG P+ +D Sbjct: 70 ILHGGEPLLAGPARLRRVCEELGSALNGIAELDLRIH--TNGVQLSPRYLDLF 120 >gi|198241803|ref|YP_002214766.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205352060|ref|YP_002225861.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856239|ref|YP_002242890.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|226707380|sp|B5FP68|MOAA_SALDC RecName: Full=Molybdenum cofactor biosynthesis protein A gi|226707381|sp|B5QX73|MOAA_SALEP RecName: Full=Molybdenum cofactor biosynthesis protein A gi|226707382|sp|B5R769|MOAA_SALG2 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|197936319|gb|ACH73652.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205271841|emb|CAR36676.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708042|emb|CAR32333.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326622521|gb|EGE28866.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627102|gb|EGE33445.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 329 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77 Query: 99 VDVPLIQALNKRG-----FEIAVETNGTIEPPQGIDW 130 D + G +IAV TNG +W Sbjct: 78 RD--FTDIIAAVGENDAIRQIAVTTNGYRLARDAANW 112 >gi|161504030|ref|YP_001571142.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865377|gb|ABX22000.1| hypothetical protein SARI_02123 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 340 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 33 DVCNFRCTYCLPD-GYKLGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 88 Query: 99 VDVPLIQALNKRG-----FEIAVETNGTIEPPQGIDW 130 D + G +IAV TNG +W Sbjct: 89 RD--FTDIIAAVGENEAIRQIAVTTNGYRLARDAANW 123 >gi|154491690|ref|ZP_02031316.1| hypothetical protein PARMER_01301 [Parabacteroides merdae ATCC 43184] gi|154087931|gb|EDN86976.1| hypothetical protein PARMER_01301 [Parabacteroides merdae ATCC 43184] Length = 440 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 41/137 (29%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GC+ + C +C F + G +A ++++ G+ VL Sbjct: 159 GCDYF-----------CSYCTIPFARGRSRNG------TIASMVKQAEEVASNGGKEIVL 201 Query: 91 TG----------GEPLLQVDVPLIQALNK-RG---FEI-AVETNGTIEPPQGIDWICVSP 135 TG GE + LI+AL++ G + I ++E N + + ID++ S Sbjct: 202 TGVNIGDFGKSTGE----TFIDLIRALDEVEGIVRYRISSIEPN--LITDEAIDFVACSR 255 Query: 136 KAGCDLKIK---GGQEL 149 + I G E+ Sbjct: 256 RFAPHFHIPLQSGSDEV 272 >gi|149173373|ref|ZP_01852003.1| astB/chuR-related protein-putative enzyme of the MoaA / nifB / pqqE family [Planctomyces maris DSM 8797] gi|148847555|gb|EDL61888.1| astB/chuR-related protein-putative enzyme of the MoaA / nifB / pqqE family [Planctomyces maris DSM 8797] Length = 438 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 23/91 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C+ C + K + +V+ ++ LI+E G Sbjct: 58 CNL-----------RCQGC-----WVDVAAKQEKIDVEAMSRLIQEAKEMGNSFFGIL-- 99 Query: 91 TGGEPLLQVDVPLIQALNKR-GFEIAVETNG 120 GGEP + L++ L + + TNG Sbjct: 100 -GGEPFMHPQ--LLEILERHPDCYFQIFTNG 127 >gi|152988281|ref|YP_001347893.1| putative radical activating enzyme [Pseudomonas aeruginosa PA7] gi|150963439|gb|ABR85464.1| probable radical activating enzyme [Pseudomonas aeruginosa PA7] Length = 212 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 25/87 (28%) Query: 29 FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85 F GC S +C C DT G R + +L I+ E Sbjct: 25 FQGC-----------SIRCPGCISADT-----WGPGRRRIALARLLADIQPWLEQAEG-- 66 Query: 86 RYCVLTGGEPLLQ--VDVPLIQALNKR 110 ++GGEP Q + L+ L +R Sbjct: 67 --ITVSGGEPFEQFDALLALLGELRQR 91 >gi|62179370|ref|YP_215787.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127003|gb|AAX64706.1| molybdopterin biosynthesis, protein A [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713841|gb|EFZ05412.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 340 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 33 DVCNFRCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 88 Query: 99 VDVPLIQALNKRG-----FEIAVETNGTIEPPQGIDW 130 D + G +IAV TNG +W Sbjct: 89 RD--FTDIIAAVGENDAIRQIAVTTNGYRLARDAANW 123 >gi|325527317|gb|EGD04681.1| radical SAM domain protein [Burkholderia sp. TJI49] Length = 386 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 22/120 (18%) Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C C D+ R +V++ + ++E + Sbjct: 38 CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLEAVDECG------APIVSI 78 Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 GGEPLL ++P +++ + KR + + TN + + +D +P + + G +E+ Sbjct: 79 AGGEPLLHKEMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYQPNPYFVWSVHLDGDKEM 137 >gi|307297318|ref|ZP_07577124.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306916578|gb|EFN46960.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 209 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 10/78 (12%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLI 104 C +C R + + + K V+TGGEP L+ +P + Sbjct: 20 CAYC------HNSELKKRVKEELGESEVFDYLDKRGKLLDAVVITGGEPTLRASELLPFM 73 Query: 105 QALNKRGFEIA--VETNG 120 + L R E ++TNG Sbjct: 74 RRLKSRFPETLLKIDTNG 91 >gi|222148529|ref|YP_002549486.1| molybdenum cofactor biosynthesis protein A [Agrobacterium vitis S4] gi|221735515|gb|ACM36478.1| molybdenum cofactor biosynthesis protein A [Agrobacterium vitis S4] Length = 329 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 10/87 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C K +++L L G ++ R LTGGEPL++ + Sbjct: 18 DRCDFRCTYC-MAENMSFLPKKDLLTLEELDRLCSAFIAKGVRKLR---LTGGEPLVRKN 73 Query: 101 VPLIQALNKRGFEI-AVE-----TNGT 121 + + R + A+E TNG+ Sbjct: 74 IMFLVRSLSRHLQNGALEELTLTTNGS 100 >gi|261419016|ref|YP_003252698.1| molybdenum cofactor biosynthesis protein A [Geobacillus sp. Y412MC61] gi|319765832|ref|YP_004131333.1| molybdenum cofactor biosynthesis protein A [Geobacillus sp. Y412MC52] gi|261375473|gb|ACX78216.1| molybdenum cofactor biosynthesis protein A [Geobacillus sp. Y412MC61] gi|317110698|gb|ADU93190.1| molybdenum cofactor biosynthesis protein A [Geobacillus sp. Y412MC52] Length = 341 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 10/87 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV----LTGGEPL 96 D+ + +C +C + G DQL ++E + E V LTGGEPL Sbjct: 26 DQCNFRCVYC--MPAEVFGPNFRFLAEDQLL-TVDEMALLAECFVELGVEKIRLTGGEPL 82 Query: 97 LQVDVP-LIQALNK-RGFE-IAVETNG 120 L+ D+ LI+ L+ G +A+ TNG Sbjct: 83 LRRDLDVLIERLSMIPGLRDVALTTNG 109 >gi|170759693|ref|YP_001785423.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum A3 str. Loch Maree] gi|169406682|gb|ACA55093.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum A3 str. Loch Maree] Length = 171 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 20/95 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 R VF SGC Q++ FC G + ++ + IE Sbjct: 23 RSVVFV--SGCKHNCKECQNKEMQ--SFC----------YGDKISLKDILKRIESNVPL- 67 Query: 82 EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114 R +GGEPL L + + G I Sbjct: 68 ---IRGVTFSGGEPLEHIKELSSLAREIKSLGLNI 99 >gi|163816598|ref|ZP_02207962.1| hypothetical protein COPEUT_02789 [Coprococcus eutactus ATCC 27759] gi|158448298|gb|EDP25293.1| hypothetical protein COPEUT_02789 [Coprococcus eutactus ATCC 27759] Length = 280 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 32/123 (26%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-------- 76 VF GC + + + TD+ + + ++L IEE Sbjct: 29 VF--LQGCKMRCKYCHNPETWNLV---TDYSKLYSDETSDAEREELEKKIEENTKLLKDK 83 Query: 77 -----------QWITGEKEGRY------CVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117 + Y ++GGE LLQ+D + + G ++ Sbjct: 84 GVKIEARTPEDLLKQALRYKPYWKNGGGITVSGGEALLQMDFLIEFFKLAKAEGIHTTID 143 Query: 118 TNG 120 T G Sbjct: 144 TAG 146 >gi|330962704|gb|EGH62964.1| molybdenum cofactor biosynthesis protein A [Pseudomonas syringae pv. maculicola str. ES4326] Length = 332 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C + + T R + L ++++ R LTGGEPL++ Sbjct: 23 DRCDFRCVYC----MAEEMTFLPRQQILSLEEILQVAERFVALGTRKIRLTGGEPLVRAG 78 Query: 101 VP-LIQALNKR-GF-EIAVETNGT 121 V L + + G E+ + TNG+ Sbjct: 79 VVGLCERIAALPGLRELCMTTNGS 102 >gi|330721583|gb|EGG99611.1| Molybdenum cofactor biosynthesis protein MoaA [gamma proteobacterium IMCC2047] Length = 328 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 7/84 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C + + R V L ++ E E LTGGEPL++ + Sbjct: 20 DRCDFRCVYC----MAEEMEFLPRARVLTLEEMTEIGTAFVELGIEKIRLTGGEPLIRRN 75 Query: 101 VP-LIQALNK-RGF-EIAVETNGT 121 + ++++L + G E+ + TNG+ Sbjct: 76 MESMVESLGQLEGLKELTITTNGS 99 >gi|295094964|emb|CBK84055.1| pyruvate formate-lyase 1-activating enzyme [Coprococcus sp. ART55/1] Length = 280 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 32/123 (26%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-------- 76 VF GC + + + TD+ + + ++L IEE Sbjct: 29 VF--LQGCKMRCKYCHNPETWNLV---TDYSKLYSDETSDAEREELEKKIEENTKLLKDK 83 Query: 77 -----------QWITGEKEGRY------CVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117 + Y ++GGE LLQ+D + + G ++ Sbjct: 84 GVKIEARTPEDLLKQALRYKPYWKNGGGITVSGGEALLQMDFLIEFFKLAKAEGIHTTID 143 Query: 118 TNG 120 T G Sbjct: 144 TAG 146 >gi|317047398|ref|YP_004115046.1| molybdenum cofactor biosynthesis protein A [Pantoea sp. At-9b] gi|316949015|gb|ADU68490.1| molybdenum cofactor biosynthesis protein A [Pantoea sp. At-9b] Length = 328 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 9/95 (9%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + ++D++ + G ++ R LTGGEP L+ Sbjct: 21 DVCNFRCTYCLPD-GYKPQGTRNKSFLSLDEIRRVTRAFAAAGTEKVR---LTGGEPSLR 76 Query: 99 VD-VPLIQALNKRG--FEIAVETNGTIEPPQGIDW 130 D +I A+ + +IAV TNG DW Sbjct: 77 RDFTEIIAAVRENAAIRQIAVTTNGYRLARDVRDW 111 >gi|255100845|ref|ZP_05329822.1| molybdenum cofactor biosynthesis protein [Clostridium difficile QCD-63q42] Length = 319 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 9/74 (12%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 D+ + +C +C D F + + + +I+ G + R+ TGGEPLL Sbjct: 18 DKCNLRCVYCMPPDVKF--DKNYINENLSFEDYKFIIKAMAEQGITKIRF---TGGEPLL 72 Query: 98 QVDV-PLIQALNKR 110 + LI+ + Sbjct: 73 YPKLNELIKFTKEE 86 >gi|254457435|ref|ZP_05070863.1| hypothetical protein CBGD1_1131 [Campylobacterales bacterium GD 1] gi|207086227|gb|EDZ63511.1| hypothetical protein CBGD1_1131 [Campylobacterales bacterium GD 1] Length = 373 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 18/102 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL + + DT +Q+ I E E ++ + + Sbjct: 33 CNLSCMHCYSKSTL--DEVDT------------LTTEQIKKTILEMK---ENGVKFIIFS 75 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132 GGEPL + D+ + G + +NG I I Sbjct: 76 GGEPLTRKDLFEIADFCKDNGIITYLSSNGLYFTKGNIKRIV 117 >gi|168263700|ref|ZP_02685673.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205347812|gb|EDZ34443.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 329 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77 Query: 99 VDVPLIQALNKRG-----FEIAVETNGTIEPPQGIDW 130 D + G +IAV TNG +W Sbjct: 78 RD--FTDIIAAVGENDAIRQIAVTTNGYRLARDAANW 112 >gi|145321187|gb|ABP63662.1| molybdenum cofactor biosynthesis protein A [Achromobacter sp. SY8] Length = 364 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 22/97 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 D+ + +C +C D F+ D+L G ++ R L+G Sbjct: 46 DQCNFRCTYCMPREVFGADYPFLRRD----ELLTFDELERTARAFIRLGVRKIR---LSG 98 Query: 93 GEPLLQVDVPLIQA-------LNKRGFEIAVETNGTI 122 GEPLL+ D+ + A L ++A+ TNG + Sbjct: 99 GEPLLRKDLEHLVAQLARLVTLAGEPIDLAMTTNGAL 135 >gi|87307325|ref|ZP_01089470.1| putative heme d1 biosynthesis protein [Blastopirellula marina DSM 3645] gi|87290065|gb|EAQ81954.1| putative heme d1 biosynthesis protein [Blastopirellula marina DSM 3645] Length = 395 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 2/66 (3%) Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142 + GGEPLL + ++ L R I + TN ++ + S + Sbjct: 84 GAPIVSIPGGEPLLHPQINEIVDGLVARKKYIYLCTN-ALKLEAALPSFTPSKYLSFSVH 142 Query: 143 IKGGQE 148 + G +E Sbjct: 143 MDGPRE 148 >gi|312137249|ref|YP_004004586.1| radical sam domain protein [Methanothermus fervidus DSM 2088] gi|311224968|gb|ADP77824.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088] Length = 487 Score = 35.4 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 11/88 (12%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 +W+ + R + C+ C + G+ +V + D+I + I +GG Sbjct: 116 VWNITQ--RCNMNCKHC--YESKGNSEELGKEDVMNIIDIISSEKI------PILAFSGG 165 Query: 94 EPLLQVD-VPLIQALNKRGFEIAVETNG 120 EP + + + I+ +++G +A+ TNG Sbjct: 166 EPSIHPNILDYIEYASEKGLYVAMATNG 193 >gi|312970855|ref|ZP_07785034.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 1827-70] gi|310336616|gb|EFQ01783.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 1827-70] Length = 329 Score = 35.4 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFVSLGTEKVR---LTGGEPSLR 77 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 78 RDFTDIIAAVRENDAIRQIAVTTNG 102 >gi|307300200|ref|ZP_07579985.1| coenzyme PQQ biosynthesis protein E [Sinorhizobium meliloti BL225C] gi|306905089|gb|EFN35672.1| coenzyme PQQ biosynthesis protein E [Sinorhizobium meliloti BL225C] Length = 375 Score = 35.4 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 6/80 (7%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R C +C Q + ++ + + G L+GGEP + D+ Sbjct: 31 RCPLACPYCSNPIALTQA--KEELSTEEWTGVFAQAADLGVLHLH---LSGGEPAARRDL 85 Query: 102 -PLIQALNKRGFEIAVETNG 120 L QA + G + T+G Sbjct: 86 VELTQAASSLGLYTNLITSG 105 >gi|240949712|ref|ZP_04754047.1| hypothetical protein AM305_12200 [Actinobacillus minor NM305] gi|240295970|gb|EER46646.1| hypothetical protein AM305_12200 [Actinobacillus minor NM305] Length = 333 Score = 35.4 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 5/75 (6%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103 + CR+C + K G+ Q I E E +L+GG+PL+ D L Sbjct: 118 AINCRYCFRRHFPYEDVKSGKSAWQQSLQYIAEHPEIEE-----VILSGGDPLMAKDEEL 172 Query: 104 IQALNKRGFEIAVET 118 L V+T Sbjct: 173 DWILTALEKITHVKT 187 >gi|222528835|ref|YP_002572717.1| molybdenum cofactor biosynthesis protein A [Caldicellulosiruptor bescii DSM 6725] gi|222455682|gb|ACM59944.1| molybdenum cofactor biosynthesis protein A [Caldicellulosiruptor bescii DSM 6725] Length = 314 Score = 35.4 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 8/123 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + C +C T + + + + +I G ++ R +TG Sbjct: 16 NYLRLSVTDRCNFFCMYCRTKDLCSESSSQLSEEE--IFRIISAFKKLGIQKLR---ITG 70 Query: 93 GEPLLQVDV-PLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 GEP L+ D+ +I+ NK G E I + TNG ++ + I I SP ++ + K Sbjct: 71 GEPFLRDDIFGIIEFANKIGIENINITTNGWLD-TEKIKKIIKSPLKSINISLDTLDREK 129 Query: 151 LVF 153 F Sbjct: 130 YKF 132 >gi|16263949|ref|NP_436741.1| pyrroloquinoline quinone biosynthesis protein PqqE [Sinorhizobium meliloti 1021] gi|32363404|sp|Q9EXU8|PQQE_RHIME RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|12007634|gb|AAG42542.1| coenzyme PQQ synthesis protein E [Sinorhizobium meliloti] gi|15140073|emb|CAC48601.1| probable pyrroloquinoline quinone synthesis protein E [Sinorhizobium meliloti 1021] Length = 375 Score = 35.4 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 6/80 (7%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R C +C Q + ++ + + G L+GGEP + D+ Sbjct: 31 RCPLACPYCSNPIALTQA--KEELSTEEWTGVFAQAADLGVLHLH---LSGGEPAARRDL 85 Query: 102 -PLIQALNKRGFEIAVETNG 120 L QA + G + T+G Sbjct: 86 VELTQAASSLGLYTNLITSG 105 >gi|16759726|ref|NP_455343.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764165|ref|NP_459780.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142501|ref|NP_805843.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414097|ref|YP_151172.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167550521|ref|ZP_02344278.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992033|ref|ZP_02573131.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230688|ref|ZP_02655746.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236730|ref|ZP_02661788.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168466391|ref|ZP_02700253.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820055|ref|ZP_02832055.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446581|ref|YP_002040037.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194471119|ref|ZP_03077103.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734733|ref|YP_002113894.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247899|ref|YP_002145757.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262997|ref|ZP_03163071.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197363019|ref|YP_002142656.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200390525|ref|ZP_03217136.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929942|ref|ZP_03220963.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|213861434|ref|ZP_03385904.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238913361|ref|ZP_04657198.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825275|ref|ZP_06544554.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|54037810|sp|P65387|MOAA_SALTI RecName: Full=Molybdenum cofactor biosynthesis protein A gi|54041470|sp|P65386|MOAA_SALTY RecName: Full=Molybdenum cofactor biosynthesis protein A gi|81599444|sp|Q5PG37|MOAA_SALPA RecName: Full=Molybdenum cofactor biosynthesis protein A gi|226707379|sp|B5F079|MOAA_SALA4 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|226707384|sp|B4SZK4|MOAA_SALNS RecName: Full=Molybdenum cofactor biosynthesis protein A gi|226707385|sp|B5BC24|MOAA_SALPK RecName: Full=Molybdenum cofactor biosynthesis protein A gi|226707386|sp|B4TQU6|MOAA_SALSV RecName: Full=Molybdenum cofactor biosynthesis protein A gi|25304509|pir||AH0597 molybdenum cofactor biosynthesis protein A [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16419308|gb|AAL19739.1| molybdopterin biosynthesis, protein A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502019|emb|CAD05250.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Typhi] gi|29138132|gb|AAO69703.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128354|gb|AAV77860.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194405244|gb|ACF65466.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194457483|gb|EDX46322.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710235|gb|ACF89456.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631011|gb|EDX49597.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094496|emb|CAR60014.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211602|gb|ACH48999.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241252|gb|EDY23872.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290117|gb|EDY29474.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199602970|gb|EDZ01516.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320936|gb|EDZ06137.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205324515|gb|EDZ12354.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329599|gb|EDZ16363.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334800|gb|EDZ21564.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205343086|gb|EDZ29850.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|261246060|emb|CBG23862.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992542|gb|ACY87427.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157387|emb|CBW16876.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911824|dbj|BAJ35798.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226375|gb|EFX51426.1| Molybdenum cofactor biosynthesis protein MoaA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613850|gb|EFY10788.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620349|gb|EFY17216.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622775|gb|EFY19620.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628687|gb|EFY25474.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631625|gb|EFY28381.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637151|gb|EFY33854.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641649|gb|EFY38285.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322648030|gb|EFY44500.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648488|gb|EFY44940.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654225|gb|EFY50548.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658140|gb|EFY54407.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663614|gb|EFY59816.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670350|gb|EFY66490.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671586|gb|EFY67708.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676942|gb|EFY73009.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682867|gb|EFY78886.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686546|gb|EFY82528.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323129109|gb|ADX16539.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194557|gb|EFZ79750.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199112|gb|EFZ84208.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202068|gb|EFZ87127.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208907|gb|EFZ93844.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213453|gb|EFZ98247.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215256|gb|EGA00002.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220825|gb|EGA05263.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227118|gb|EGA11296.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229934|gb|EGA14057.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233159|gb|EGA17255.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240894|gb|EGA24936.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243211|gb|EGA27231.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248750|gb|EGA32678.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251754|gb|EGA35621.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258754|gb|EGA42411.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260701|gb|EGA44306.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267863|gb|EGA51342.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268753|gb|EGA52213.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 329 Score = 35.4 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 22 DVCNFRCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77 Query: 99 VDVPLIQALNKRG-----FEIAVETNGTIEPPQGIDW 130 D + G +IAV TNG +W Sbjct: 78 RD--FTDIIAAVGENDAIRQIAVTTNGYRLARDAANW 112 >gi|313679134|ref|YP_004056873.1| GTP cyclohydrolase subunit moaa [Oceanithermus profundus DSM 14977] gi|313151849|gb|ADR35700.1| GTP cyclohydrolase subunit MoaA [Oceanithermus profundus DSM 14977] Length = 325 Score = 35.4 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 17/137 (12%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R + C +C G D + + G R+ TGGEPL++ ++ Sbjct: 21 RCNYHCVYC-HPLGMEMSDPPGTVTTDDVRHFLRAAASLGMDAVRF---TGGEPLVRREL 76 Query: 102 PLI--QALNKRGFE-IAVETNGTIE-------PPQGIDWICVS-PKAGCDL--KIKGGQE 148 P + A G +AV TNGT+ G+ + +S D+ + G E Sbjct: 77 PEMIEAAATTPGVRDVAVTTNGTLFRRRHRELLDAGLSRVNISIDAVNPDVFRNLTRGGE 136 Query: 149 LKLVFPQVNVSPENYIG 165 + V+ + ++ E + Sbjct: 137 IAQVWDAIELALELELH 153 >gi|213424802|ref|ZP_03357552.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|320085073|emb|CBY94860.1| Molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 340 Score = 35.4 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 33 DVCNFRCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 88 Query: 99 VDVPLIQALNKRG-----FEIAVETNGTIEPPQGIDW 130 D + G +IAV TNG +W Sbjct: 89 RD--FTDIIAAVGENDAIRQIAVTTNGYRLARDAANW 123 >gi|118588651|ref|ZP_01546059.1| quinohemoprotein amine dehydrogenase, putative SAM-radical dependentactivating subunit [Stappia aggregata IAM 12614] gi|118438637|gb|EAV45270.1| quinohemoprotein amine dehydrogenase, putative SAM-radical dependentactivating subunit [Stappia aggregata IAM 12614] Length = 478 Score = 35.4 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 25/83 (30%) Query: 30 SGCNLWSGREQDRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITG-EK 83 +GCNL C +C DT +KG R + IE ++ Sbjct: 110 TGCNL-----------SCTYCYKEDLDTP------SKGRRMAFETAKRSIELLLAESPDR 152 Query: 84 EGRYCVLTGGEPLLQVDVPLIQA 106 + V GGEPL ++ LI+ Sbjct: 153 DSYNVVFFGGEPL--SNLALIKE 173 >gi|121996882|ref|YP_001001669.1| molybdenum cofactor biosynthesis protein A [Halorhodospira halophila SL1] gi|121588287|gb|ABM60867.1| GTP cyclohydrolase subunit MoaA [Halorhodospira halophila SL1] Length = 340 Score = 35.4 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 17/91 (18%) Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQ 77 +GR + R S DR +C +C D + ++++L + Sbjct: 12 SGRPIDYLRLS--------VTDRCDLRCLYCMGD---AVRFVPRSEVLSLEELEQVAAAF 60 Query: 78 WITGEKEGRYCVLTGGEPLLQVD-VPLIQAL 107 G ++ R +TGGEPLL+ + L + L Sbjct: 61 VSLGVRKIR---ITGGEPLLRRGVLALARRL 88 >gi|255013975|ref|ZP_05286101.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 2_1_7] Length = 301 Score = 35.4 bits (81), Expect = 5.7, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 6/86 (6%) Query: 36 SGREQDRLSAQCR-FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 + R R +C C T G Y++D++ IE++ + ++ GGE Sbjct: 76 TDRSLCRTCGRCAEVCPT---LAMEMSGREYSIDEVMREIEKETVFMDRSEGGVTFCGGE 132 Query: 95 PLLQV--DVPLIQALNKRGFEIAVET 118 PL V L+ G AV+T Sbjct: 133 PLSHPSDLVALLDRCGALGIHRAVDT 158 >gi|322419295|ref|YP_004198518.1| Radical SAM domain-containing protein [Geobacter sp. M18] gi|320125682|gb|ADW13242.1| Radical SAM domain protein [Geobacter sp. M18] Length = 447 Score = 35.4 bits (81), Expect = 5.7, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 21/99 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C + +G D L + + I+ + Sbjct: 94 CNL-----------NCAYC-FEEDFRRGQYMSEATADLLVGTLARERISRGWD-LTVSFY 140 Query: 92 GGEPLLQVDV------PLIQALNKRG--FEIAVETNGTI 122 GGEPLL D+ PL+ G + + TNGT+ Sbjct: 141 GGEPLLSRDLMRRISQPLLAEARSHGVKYGFNLITNGTL 179 >gi|126699320|ref|YP_001088217.1| molybdenum cofactor biosynthesis protein [Clostridium difficile 630] gi|254975350|ref|ZP_05271822.1| molybdenum cofactor biosynthesis protein [Clostridium difficile QCD-66c26] gi|255092740|ref|ZP_05322218.1| molybdenum cofactor biosynthesis protein [Clostridium difficile CIP 107932] gi|255306734|ref|ZP_05350905.1| molybdenum cofactor biosynthesis protein [Clostridium difficile ATCC 43255] gi|255314479|ref|ZP_05356062.1| molybdenum cofactor biosynthesis protein [Clostridium difficile QCD-76w55] gi|255517156|ref|ZP_05384832.1| molybdenum cofactor biosynthesis protein [Clostridium difficile QCD-97b34] gi|255650260|ref|ZP_05397162.1| molybdenum cofactor biosynthesis protein [Clostridium difficile QCD-37x79] gi|260683379|ref|YP_003214664.1| molybdenum cofactor biosynthesis protein [Clostridium difficile CD196] gi|260686974|ref|YP_003218107.1| molybdenum cofactor biosynthesis protein [Clostridium difficile R20291] gi|306520235|ref|ZP_07406582.1| molybdenum cofactor biosynthesis protein A [Clostridium difficile QCD-32g58] gi|115250757|emb|CAJ68581.1| Molybdenum cofactor biosynthesis protein MoaA [Clostridium difficile] gi|260209542|emb|CBA63138.1| molybdenum cofactor biosynthesis protein [Clostridium difficile CD196] gi|260212990|emb|CBE04301.1| molybdenum cofactor biosynthesis protein [Clostridium difficile R20291] Length = 319 Score = 35.4 bits (81), Expect = 5.7, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 9/74 (12%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 D+ + +C +C D F + + + +I+ G + R+ TGGEPLL Sbjct: 18 DKCNLRCVYCMPPDVKF--DKNYINENLSFEDYKFIIKAMAEQGITKIRF---TGGEPLL 72 Query: 98 QVDV-PLIQALNKR 110 + LI+ + Sbjct: 73 YPKLNELIKFTKEE 86 >gi|32267330|ref|NP_861362.1| hypothetical protein HH1831 [Helicobacter hepaticus ATCC 51449] gi|32263383|gb|AAP78428.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 310 Score = 35.4 bits (81), Expect = 5.7, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 4/65 (6%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQV-DVPLI 104 C +C+ + +VD++ + ++ + + LT GEP L LI Sbjct: 32 CVYCELQKAKSVESMNAVVSVDEVVNAVQRAIVA--HKCDVLTLTANGEPTLYPYLKELI 89 Query: 105 QALNK 109 AL Sbjct: 90 SALKD 94 >gi|307132435|ref|YP_003884451.1| putative oxidoreductase [Dickeya dadantii 3937] gi|306529964|gb|ADM99894.1| predicted oxidoreductase [Dickeya dadantii 3937] Length = 379 Score = 35.4 bits (81), Expect = 5.7, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 48/142 (33%), Gaps = 25/142 (17%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y LADL + + G + + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVAHLLADLDADLPLAGGRPLHSIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPP-------QGIDWICV- 133 GG P L + +Q L EI +E N GT+E GI+ I + Sbjct: 66 GGTPSL-LSAEAMQQLLDGVRARLSLPAEAEITMEANPGTVEADRFSGYQRAGINRISIG 124 Query: 134 ----SP-KAGCDLKIKGGQELK 150 SP K +I G +E K Sbjct: 125 VQSFSPDKLTRLGRIHGPEEAK 146 >gi|15897469|ref|NP_342074.1| coenzyme PQQ synthesis protein E (pqqE-1) [Sulfolobus solfataricus P2] gi|284175911|ref|ZP_06389880.1| coenzyme PQQ synthesis protein E (pqqE-1) [Sulfolobus solfataricus 98/2] gi|6015925|emb|CAB57752.1| coenzyme PQQ synthesis protein [Sulfolobus solfataricus P2] gi|13813710|gb|AAK40864.1| Coenzyme PQQ synthesis protein E (pqqE-1) [Sulfolobus solfataricus P2] gi|261602209|gb|ACX91812.1| Radical SAM domain protein [Sulfolobus solfataricus 98/2] Length = 361 Score = 35.4 bits (81), Expect = 5.7, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 14/75 (18%) Query: 42 RLSAQCRFC-----DTDFVGIQGTKGGR-------YNVDQLADLIEEQWITGEKEGRY-- 87 + S QC +C D F R N+ + +I + EK Sbjct: 16 KCSQQCIYCHNPPKDLKFYIADKVPKPRSVIEMNELNLSEWISVINQIKRLDEKYEGIMD 75 Query: 88 CVLTGGEPLLQVDVP 102 V+TGGEPLL+ D+ Sbjct: 76 VVITGGEPLLRSDLE 90 >gi|28557069|dbj|BAC57533.1| pyruvate formate-lyase activating enzyme [Clostridium limosum] Length = 194 Score = 35.4 bits (81), Expect = 5.7, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 4/62 (6%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVET 118 G Y L + +K G +GG+P++Q + LI L + ++T Sbjct: 1 GTEYTPGALLKKLIRFKPYFDKSGGGVTFSGGDPIMQPEF-LIDCLKLCKENNIHTTIDT 59 Query: 119 NG 120 +G Sbjct: 60 SG 61 >gi|150007436|ref|YP_001302179.1| pyruvate-formate lyase-activating enzyme [Parabacteroides distasonis ATCC 8503] gi|149935860|gb|ABR42557.1| pyruvate-formate lyase-activating enzyme [Parabacteroides distasonis ATCC 8503] Length = 301 Score = 35.4 bits (81), Expect = 5.8, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 6/86 (6%) Query: 36 SGREQDRLSAQCR-FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 + R R +C C T G Y++D++ IE++ + ++ GGE Sbjct: 76 TDRSLCRTCGRCAEVCPT---LAMEMSGREYSIDEVMREIEKETVFMDRSEGGVTFCGGE 132 Query: 95 PLLQV--DVPLIQALNKRGFEIAVET 118 PL V L+ + G AV+T Sbjct: 133 PLSHPSDLVALLDRCGELGIHRAVDT 158 >gi|167039016|ref|YP_001662001.1| radical SAM domain-containing protein [Thermoanaerobacter sp. X514] gi|300913395|ref|ZP_07130712.1| Radical SAM domain protein [Thermoanaerobacter sp. X561] gi|307723590|ref|YP_003903341.1| Radical SAM domain-containing protein [Thermoanaerobacter sp. X513] gi|166853256|gb|ABY91665.1| Radical SAM domain protein [Thermoanaerobacter sp. X514] gi|300890080|gb|EFK85225.1| Radical SAM domain protein [Thermoanaerobacter sp. X561] gi|307580651|gb|ADN54050.1| Radical SAM domain protein [Thermoanaerobacter sp. X513] Length = 427 Score = 35.4 bits (81), Expect = 5.8, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 17/95 (17%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL + + V ++ I+E I Sbjct: 100 TQRCNLNCPTCFTFSPKR----------NKLNDMPTEKVKEVLRKIKEFGINE------V 143 Query: 89 VLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 + +GGEP L+ D + +++ K + V TNGT+ Sbjct: 144 IFSGGEPFLREDFIKILEESKKLSLSVVVLTNGTL 178 >gi|78184186|ref|YP_376621.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp. CC9902] gi|123743556|sp|Q3AZA0|RLMN_SYNS9 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|78168480|gb|ABB25577.1| conserved hypothetical protein [Synechococcus sp. CC9902] Length = 351 Score = 35.4 bits (81), Expect = 5.8, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 9/77 (11%) Query: 28 RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 R + C Q CRFC T G+Q ++ D + ++ + Sbjct: 101 RLTVC----ISSQVGCPMACRFCATGKSGLQ----RSLATHEIVDQVLSVREAMDRRPSH 152 Query: 88 CVLTG-GEPLLQVDVPL 103 V G GEPLL + L Sbjct: 153 VVFMGMGEPLLNSEAVL 169 >gi|332026222|gb|EGI66364.1| Molybdenum cofactor biosynthesis protein 1 [Acromyrmex echinatior] Length = 571 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 28/115 (24%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C +C G++ TK G +++ + + G ++ R L Sbjct: 65 CNL-----------RCTYC-MPAEGVKLTKKEGILRTNEIIQIADLFVKEGVRKIR---L 109 Query: 91 TGGEPLLQVDVP----LIQALNKRGFEIAVETNG---TIEPP----QGIDWICVS 134 TGGEP ++ D+ ++ L ++A+ TNG T + P G+D + +S Sbjct: 110 TGGEPTIRKDIIDIVGQLKQLRDLD-QVAITTNGLTLTRQLPALQKAGLDALNIS 163 >gi|319744473|gb|EFV96830.1| radical SAM superfamily protein [Streptococcus agalactiae ATCC 13813] Length = 438 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 50/157 (31%), Gaps = 14/157 (8%) Query: 49 FCDTD--FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQ 105 +CD F + + + + I Q + + GGEP D+ L+ Sbjct: 115 YCDLKCGFCFLANREDRNAKPAKDWERILRQ--AKDNGVLSVSILGGEPTRYFDIDNLLI 172 Query: 106 ALNKRGFEIAVETNG------TIEPPQGIDWICVSPKAGC-DLKIKGGQELKLVFPQVNV 158 A + + + TN T+E +I P L K EL V P + Sbjct: 173 ACEELKIKTTITTNAQLIKKSTVEILAKSKYIT--PVLSLQTLDSKLNFELMGVRPDRQI 230 Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195 Y ++ + + E + +C +N Sbjct: 231 KLAKYFKDVGKKCRINAVYTKQSYEQIIELVDFCIEN 267 >gi|224437173|ref|ZP_03658154.1| molybdenum cofactor biosynthesis protein A [Helicobacter cinaedi CCUG 18818] gi|313143638|ref|ZP_07805831.1| molybdenum cofactor biosynthesis protein A [Helicobacter cinaedi CCUG 18818] gi|313128669|gb|EFR46286.1| molybdenum cofactor biosynthesis protein A [Helicobacter cinaedi CCUG 18818] Length = 324 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 8/58 (13%) Query: 46 QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 +C++C DT I T L ++ + + + +TGGEPLL+ D+ Sbjct: 24 RCQYCMPDTPEDFIDKT------ALPLPKMLIFIKLAIDNGIKKIRITGGEPLLRADL 75 >gi|209524545|ref|ZP_03273093.1| Radical SAM domain protein [Arthrospira maxima CS-328] gi|209495003|gb|EDZ95310.1| Radical SAM domain protein [Arthrospira maxima CS-328] Length = 347 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 9/82 (10%) Query: 41 DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 ++ C+ C G K ++ ++++ G K+ +TGGEPLL Sbjct: 13 NKCMLACKHC----CFDAGEKMLPELKKERWMQILKQGKNLGVKD---IDITGGEPLLYK 65 Query: 100 -DVPLIQALNKRGFEIAVETNG 120 LI + + ++TNG Sbjct: 66 GLDHLINYAVNLEYNVTLQTNG 87 >gi|154498075|ref|ZP_02036453.1| hypothetical protein BACCAP_02056 [Bacteroides capillosus ATCC 29799] gi|150273065|gb|EDN00222.1| hypothetical protein BACCAP_02056 [Bacteroides capillosus ATCC 29799] Length = 460 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 26/112 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVD-QLADLIEEQWITGEKEGRYCV 89 CNL +C++C F G R +D + A + I + R Sbjct: 113 CNL-----------RCKYC---FASTGDFGTGHRMTMDFETAKRAIDFVIERSGKRRNIE 158 Query: 90 LT--GGEPLLQVDVP--------LIQALNKRGFEIAVETNGTIEPPQGIDWI 131 + GGEPL+ +D I+ + + F + TNG + + I++I Sbjct: 159 VDFFGGEPLMAMDTVKRTVEYARSIEKEHGKCFRFTITTNGVLLNDENIEYI 210 >gi|301309607|ref|ZP_07215549.1| putative radical SAM domain protein [Bacteroides sp. 20_3] gi|300832696|gb|EFK63324.1| putative radical SAM domain protein [Bacteroides sp. 20_3] Length = 321 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 19/110 (17%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118 +K ++++ +LI++ I G +GGEP L D+ ++ ++G +AV T Sbjct: 28 SKNHMMPLEKVKELIDDVDILG---CEQISFSGGEPFLHKDLVKMVAYAYRKGMRVAVYT 84 Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQEL-----KLVFPQVNVSPENY 163 +G K + IK EL K++ +PE Y Sbjct: 85 SGIYN----------DSKGYSAIPIKHLMELLPYSCKIIVNYEASTPETY 124 >gi|299530509|ref|ZP_07043929.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni S44] gi|298721485|gb|EFI62422.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni S44] Length = 369 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 20/104 (19%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL------IEEQWITGEKEGRYCV 89 Q + CRFC T G QG + LA L + +++ T ++ V Sbjct: 100 CVSSQAGCAVGCRFCST---GHQGFSRNLNTGEILAQLWYAEHSLRKRFGTEDRIISNVV 156 Query: 90 LTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123 + G GEPL Q L+ AL G+ + V T+G + Sbjct: 157 MMGMGEPL-QNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVP 199 >gi|264679426|ref|YP_003279333.1| radical SAM enzyme, Cfr family [Comamonas testosteroni CNB-2] gi|262209939|gb|ACY34037.1| radical SAM enzyme, Cfr family [Comamonas testosteroni CNB-2] Length = 369 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 20/104 (19%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL------IEEQWITGEKEGRYCV 89 Q + CRFC T G QG + LA L + +++ T ++ V Sbjct: 100 CVSSQAGCAVGCRFCST---GHQGFSRNLNTGEILAQLWYAEHSLRKRFGTEDRIISNVV 156 Query: 90 LTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123 + G GEPL Q L+ AL G+ + V T+G + Sbjct: 157 MMGMGEPL-QNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVP 199 >gi|257057375|ref|YP_003135207.1| GTP cyclohydrolase subunit MoaA [Saccharomonospora viridis DSM 43017] gi|256587247|gb|ACU98380.1| GTP cyclohydrolase subunit MoaA [Saccharomonospora viridis DSM 43017] Length = 339 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 D+ + +C +C G++ R D++ LI+ LTGGEPLL+ Sbjct: 30 DKCNLRCTYC-MPAEGLEWMPDQRLLTDDEIVRLID--IAVRLLGVTDVRLTGGEPLLRP 86 Query: 100 DVP-L---IQALNKRGFEIAVETNG 120 + L I AL R +A+ TNG Sbjct: 87 RLEGLVARIAALRPRP-RLAMTTNG 110 >gi|255655733|ref|ZP_05401142.1| molybdenum cofactor biosynthesis protein [Clostridium difficile QCD-23m63] gi|296451740|ref|ZP_06893471.1| molybdenum cofactor biosynthesis protein A [Clostridium difficile NAP08] gi|296878984|ref|ZP_06902982.1| molybdenum cofactor biosynthesis protein A [Clostridium difficile NAP07] gi|296259441|gb|EFH06305.1| molybdenum cofactor biosynthesis protein A [Clostridium difficile NAP08] gi|296430011|gb|EFH15860.1| molybdenum cofactor biosynthesis protein A [Clostridium difficile NAP07] Length = 319 Score = 35.0 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 9/74 (12%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 D+ + +C +C D F + + + +I+ G + R+ TGGEPLL Sbjct: 18 DKCNLRCVYCMPPDVKF--DKNYINENLSFEDYKFIIKAMAEQGITKVRF---TGGEPLL 72 Query: 98 QVDV-PLIQALNKR 110 + LI+ + Sbjct: 73 YPKLNELIKFTKEE 86 >gi|187933498|ref|YP_001885706.1| glycyl-radical enzyme activating family protein [Clostridium botulinum B str. Eklund 17B] gi|187721651|gb|ACD22872.1| glycyl-radical enzyme activating family protein [Clostridium botulinum B str. Eklund 17B] Length = 300 Score = 35.0 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119 +D++ + + I K G L+GGE L D + L++ + A+ET+ Sbjct: 103 AKEMTIDEVFKEVIKDEIFYSKSGGGVTLSGGEVLSNGDFALDLLKKCKENYINTAIETS 162 Query: 120 G 120 G Sbjct: 163 G 163 >gi|15669011|ref|NP_247815.1| molybdenum cofactor biosynthesis protein A [Methanocaldococcus jannaschii DSM 2661] gi|2496130|sp|Q58234|MOAA_METJA RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|1591511|gb|AAB98823.1| molybdenum cofactor biosynthesis protein (moaA) [Methanocaldococcus jannaschii DSM 2661] Length = 298 Score = 35.0 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 18/91 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL QC +C G +++ + + G K+ + ++ Sbjct: 20 CNL-----------QCFYC--HREGHDSNNDRYMTPEEIGIIAKTSTKFGVKKIK---IS 63 Query: 92 GGEPLLQVDV-PLIQALNKRGFE-IAVETNG 120 GGEPLL+ DV +I+ + + I++ TNG Sbjct: 64 GGEPLLRKDVCEIIENIKDERIKDISLTTNG 94 >gi|304310967|ref|YP_003810565.1| Molybdenum cofactor biosynthesis protein A [gamma proteobacterium HdN1] gi|301796700|emb|CBL44912.1| Molybdenum cofactor biosynthesis protein A [gamma proteobacterium HdN1] Length = 332 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 13/86 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV---LTGGEPLL 97 DR +C +C + Q+ L E Q I G LTGGEPL+ Sbjct: 24 DRCDFRCVYC-------MSEQMQFLPRSQVLSLEEMQTIAAVFVGLGVTKIRLTGGEPLV 76 Query: 98 QVD-VPLIQALNK-RGF-EIAVETNG 120 + D V L++ L++ G EI + TNG Sbjct: 77 RKDCVSLVRGLSELEGLKEITLTTNG 102 >gi|255327132|ref|ZP_05368207.1| putative oxygen-independent coproporphyrinogen III oxidase [Rothia mucilaginosa ATCC 25296] gi|255295750|gb|EET75092.1| putative oxygen-independent coproporphyrinogen III oxidase [Rothia mucilaginosa ATCC 25296] Length = 428 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 20/110 (18%) Query: 30 SGC---NLWSGREQDRLSAQCRFCDTD-FVGIQGTKG---GRYNVDQLADLI-----EEQ 77 +GC + S +C +CD + + G G Y D +A+++ E Sbjct: 22 AGCETRDFSLYVHIPFCSVRCGYCDFNTYATEDFGDGIGLGTYAADAIAEILFAARTLEA 81 Query: 78 WITGEKEGRYCVLTGGEPLLQVDVPLIQALNK--------RGFEIAVETN 119 ++ GG P L++ L G E+ E N Sbjct: 82 SGVAKRPMHTVFFGGGTPTKLPARDLVRILQAAIDVFGLVEGAEVTTEAN 131 >gi|310830014|ref|YP_003962371.1| hypothetical protein ELI_4474 [Eubacterium limosum KIST612] gi|308741748|gb|ADO39408.1| hypothetical protein ELI_4474 [Eubacterium limosum KIST612] Length = 361 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 16/101 (15%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL R + C + ++ + EE G L Sbjct: 72 CNLHCKGCYARANGICS----------AGEEKALTAEEWQKIFEEAAGIGVSFNL---LA 118 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GGEPL++ D + + + F + TNG + + D+ Sbjct: 119 GGEPLMRRDVLEAAACVKEMVFPVF--TNGLLIDEKTADFF 157 >gi|301310562|ref|ZP_07216501.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3] gi|300832136|gb|EFK62767.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3] Length = 301 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118 G Y++D++ IE++ + ++ GGEPL V L+ G AV+T Sbjct: 100 GREYSIDEVMREIEKETVFMDRSEGGVTFCGGEPLSHPSDLVALLDRCGALGIHRAVDT 158 >gi|298375410|ref|ZP_06985367.1| radical SAM domain-containing protein [Bacteroides sp. 3_1_19] gi|298267910|gb|EFI09566.1| radical SAM domain-containing protein [Bacteroides sp. 3_1_19] Length = 301 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118 G Y++D++ IE++ + ++ GGEPL V L+ G AV+T Sbjct: 100 GREYSIDEVMREIEKETVFMDRSEGGVTFCGGEPLSHPSDLVALLDRCGALGIHRAVDT 158 >gi|295106794|emb|CBL04337.1| Predicted Fe-S oxidoreductases [Gordonibacter pamelaeae 7-10-1-b] Length = 452 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 18/91 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C T G + +++D + + +T Sbjct: 115 CNL-----------HCPVC----FMSAETGEGDPTLAEISD-MYDVIANAVGTDGAVQIT 158 Query: 92 GGEPLLQVDVP-LIQALNKRGFE-IAVETNG 120 GGEP + D+P +I+ ++GF I V TNG Sbjct: 159 GGEPTCRKDLPEIIRMGREKGFWGIEVNTNG 189 >gi|229175442|ref|ZP_04302955.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus MM3] gi|228608050|gb|EEK65359.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus MM3] Length = 339 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 27/145 (18%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L + G ++ R LTG Sbjct: 24 DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKLFVSIGVRKIR---LTG 76 Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151 GEPLL+ D+ LI L + +E G ++ + I ++ K LK G ++ Sbjct: 77 GEPLLRKDLTKLIARL------VKIE--GLVDIGLTTNAIHLT-KQAKALKEAGLH--RV 125 Query: 152 VFPQVNVSPENYIGFDFERFSLQPM 176 + + + + + +P+ Sbjct: 126 NVSLDAIDDDVFKDINGRNINTKPV 150 >gi|224024216|ref|ZP_03642582.1| hypothetical protein BACCOPRO_00939 [Bacteroides coprophilus DSM 18228] gi|224017438|gb|EEF75450.1| hypothetical protein BACCOPRO_00939 [Bacteroides coprophilus DSM 18228] Length = 366 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 66/188 (35%), Gaps = 39/188 (20%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-----YNVDQLADLIEEQWITGEK 83 + CNL +C +C ++ +G + Y+ D + + ++ Sbjct: 11 LTACNL-----------KCNYC---YIIQEGRRKNEKAIFQYSPDTIGKALS---VSRLG 53 Query: 84 EGRYCVLTG-GEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDL 141 + +T GE + ++P I + + K+G I + TNGT+ +S Sbjct: 54 GISFISMTASGETFISPELPFIAKEILKQGHFINITTNGTLRKQ-------ISFFLEMTK 106 Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW--- 198 + + F + + +N I F + G + NL Y P W Sbjct: 107 EYHEHIHISFSFHFLELKRKNLIETFFSNIKMVKDSGCSILLQINLCDEYI---PYWDEI 163 Query: 199 -RLSVQTH 205 +LS+ H Sbjct: 164 KKLSI-LH 170 >gi|221066031|ref|ZP_03542136.1| radical SAM enzyme, Cfr family [Comamonas testosteroni KF-1] gi|220711054|gb|EED66422.1| radical SAM enzyme, Cfr family [Comamonas testosteroni KF-1] Length = 373 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 20/104 (19%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL------IEEQWITGEKEGRYCV 89 Q + CRFC T G QG + LA L + +++ T ++ V Sbjct: 104 CVSSQAGCAVGCRFCST---GHQGFSRNLDTGEILAQLWYAEHSLRKRFGTEDRIISNVV 160 Query: 90 LTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123 + G GEPL Q L+ AL G+ + V T+G + Sbjct: 161 MMGMGEPL-QNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVP 203 >gi|302535264|ref|ZP_07287606.1| predicted protein [Streptomyces sp. C] gi|302444159|gb|EFL15975.1| predicted protein [Streptomyces sp. C] Length = 338 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 7/81 (8%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R + +C C F G + + +Q +L+ + E L GGEP + ++ Sbjct: 59 RCNFECLHC---FHGTRLQHADAFTAEQAVNLL--TLMREEYGTEAVTLLGGEPFVYKEL 113 Query: 102 PLI--QALNKRGFEIAVETNG 120 + A + G ++ + TNG Sbjct: 114 ARVVRHAKQELGLQVEICTNG 134 >gi|307152948|ref|YP_003888332.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7822] gi|306983176|gb|ADN15057.1| Radical SAM domain protein [Cyanothece sp. PCC 7822] Length = 459 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 9/91 (9%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL T+ + + + + + E E + ++ Sbjct: 106 CNLSCPICYAESG-------TEEFFTGSDLPRVHRSLAQIETMLDAIVANEGEPQVVQIS 158 Query: 92 GGEPLLQVDVPLIQALNKRG--FEIAVETNG 120 GGEP + + I L K + + TNG Sbjct: 159 GGEPTIHPEFFKILDLAKSKPIKHLMINTNG 189 >gi|14520330|ref|NP_125805.1| molybdenum cofactor biosynthesis protein A [Pyrococcus abyssi GE5] gi|18203544|sp|Q9V2G2|MOAA_PYRAB RecName: Full=Probable molybdenum cofactor biosynthesis protein A gi|5457545|emb|CAB49036.1| moaA molybdenum cofactor biosynthesis protein [Pyrococcus abyssi GE5] Length = 306 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 18/91 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C Q +++ ++ I + LT Sbjct: 21 CNL-----------NCFYC---HREGQLDGERTMKPEEIERIV---RIASRLGIKKVKLT 63 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121 GGEP ++ D+ +I+ + ++++ TNGT Sbjct: 64 GGEPTIRKDIVEIIRRIRPYVVDLSLTTNGT 94 >gi|150016861|ref|YP_001309115.1| molybdenum cofactor biosynthesis protein A [Clostridium beijerinckii NCIMB 8052] gi|149903326|gb|ABR34159.1| molybdenum cofactor biosynthesis protein A [Clostridium beijerinckii NCIMB 8052] Length = 324 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 19/107 (17%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLL 97 DR + +C +C + D++ +++ + +TGGEPL+ Sbjct: 18 DRCNLRCVYC------MPECGIENLEHDEILTFKEIMLIVKTVSQLGIHKIKITGGEPLV 71 Query: 98 QVDV-PLIQALNKR-GF-EIAVETNGTIE-------PPQGIDWICVS 134 + + L++ + G EI + TNG + G+D + +S Sbjct: 72 RKGIVNLVRRIKDIDGIEEITMTTNGVLFGDMADSLAEAGLDSVNIS 118 >gi|331268375|ref|YP_004394867.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum BKT015925] gi|329124925|gb|AEB74870.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum BKT015925] Length = 164 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 20/95 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 R +F SGC+ C C + G ++ + IE Sbjct: 20 RSTLF--LSGCH-----------HNCNECQNKHMQ-DFHYGEDIDIKDILSRIESNIPL- 64 Query: 82 EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEI 114 + +GGEPL Q L + + ++ +I Sbjct: 65 ---IKGVTFSGGEPLEQSKGLTLLAKKIKEQNLDI 96 >gi|308176262|ref|YP_003915668.1| molybdenum cofactor biosynthesis protein A [Arthrobacter arilaitensis Re117] gi|307743725|emb|CBT74697.1| molybdenum cofactor biosynthesis protein A [Arthrobacter arilaitensis Re117] Length = 346 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 33/147 (22%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D F + + +++ L G + R LTG Sbjct: 26 DRCNFRCVYCMPKEIFGRDFQFR----ERSELLSFEEIERLARISVSLGVTKLR---LTG 78 Query: 93 GEPLLQVDV-PLIQALNK----RGFEI--AVETNGTIEP-------PQGIDWICVSPKAG 138 GEPLL+ + L+ L+ G I A+ TNG+ P G++ + +S + Sbjct: 79 GEPLLRRGIVDLVAMLSNLRTPEGKRIDLAMTTNGSALPVLAPALKEAGLNRVTISLDSL 138 Query: 139 CDLKIKGGQELKL----VFPQVNVSPE 161 D K K ++ V + V+ E Sbjct: 139 DDEKFKAINDVNFPVSKVLEAIQVARE 165 >gi|262042607|ref|ZP_06015763.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040041|gb|EEW41156.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 378 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L DL + +E + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLQADAHYAQGREIGTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L G EI +E N GT+E + +D+ Sbjct: 66 GGTPSL-LSGPAMQTLLDGVRACLPLAAGAEITMEANPGTVEADRFVDY 113 >gi|238023391|ref|YP_002907624.1| Elongator protein 3/MiaB/NifB [Burkholderia glumae BGR1] gi|237880444|gb|ACR32774.1| Elongator protein 3/MiaB/NifB [Burkholderia glumae BGR1] Length = 486 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 15/76 (19%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL C C ++ +D+L I+ Sbjct: 81 TQRCNL-----------DCTLC---YLSENAEAVKDIPLDELFARID-TIFASYGPNTDV 125 Query: 89 VLTGGEPLLQVDVPLI 104 +TGGEP L+ L+ Sbjct: 126 QVTGGEPTLRDRGELL 141 >gi|237730758|ref|ZP_04561239.1| molybdenum cofactor biosynthesis protein A [Citrobacter sp. 30_2] gi|226906297|gb|EEH92215.1| molybdenum cofactor biosynthesis protein A [Citrobacter sp. 30_2] Length = 351 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + T G VD++ + G ++ R LTGGEP L+ Sbjct: 44 DVCNFRCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 99 Query: 99 VD-VPLIQALNKRG--FEIAVETNG 120 D +I A+ + +IAV TNG Sbjct: 100 RDFTDIIAAVRENDAIRQIAVTTNG 124 >gi|52548911|gb|AAU82760.1| moaA/nifB/pqqE family protein [uncultured archaeon GZfos19C8] Length = 511 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 13/103 (12%) Query: 31 GCNLWSGREQDRLSA----------QCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 GC G + S+ +C C T F + + + + + Sbjct: 89 GCPFDCGLCPEHKSSTMLALIDLTNRCNQRCPTCFANAAVSGYLYEPTMEQLEEMMKMLR 148 Query: 80 TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETNG 120 + GGEP ++ V +++ GF ++ V TNG Sbjct: 149 SEVPPCPAVQFAGGEPTIRDGFVDIVKMARDLGFSQVQVATNG 191 >gi|213024146|ref|ZP_03338593.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 116 Score = 35.0 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 13/92 (14%) Query: 46 QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103 +C +C D + T G VD++ + G ++ R LTGGEP L+ D Sbjct: 3 RCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLRRD--F 56 Query: 104 IQALNKRG-----FEIAVETNGTIEPPQGIDW 130 + G +IAV TNG +W Sbjct: 57 TDIIAAVGENDAIRQIAVTTNGYRLARDAANW 88 >gi|153953013|ref|YP_001393778.1| Fe-S oxidoreductase [Clostridium kluyveri DSM 555] gi|219853669|ref|YP_002470791.1| hypothetical protein CKR_0326 [Clostridium kluyveri NBRC 12016] gi|146345894|gb|EDK32430.1| Predicted Fe-S oxidoreductase [Clostridium kluyveri DSM 555] gi|219567393|dbj|BAH05377.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 330 Score = 35.0 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 7/78 (8%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104 +C+ C + G N + LIE+ G + + +GGEPL++ D+ LI Sbjct: 14 RCKHC---YRNAGSEVEGELNTLEAKKLIEDIKKAG---FKIMIFSGGEPLMRKDIFELI 67 Query: 105 QALNKRGFEIAVETNGTI 122 + K + +NGT+ Sbjct: 68 EHAAKCKLRPVLGSNGTL 85 >gi|117619818|ref|YP_855387.1| putative oxygen-independent coproporphyrinogen III oxidase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561225|gb|ABK38173.1| putative oxygen-independent coproporphyrinogen III oxidase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 381 Score = 35.0 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 12/105 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L DL ++ + + Sbjct: 6 PLSLYIHVPWCVQKCPYCDFNSHAQKGELPHLEYVAALLEDLEQDLHWAQGRPLSSIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQ 126 GG P L + V +QAL EI +E N GT+E + Sbjct: 66 GGTPSL-LSVEAMQALLDGVRARIELTADCEITMEANPGTVEADK 109 >gi|78355756|ref|YP_387205.1| GTP cyclohydrolase subunit MoaA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218161|gb|ABB37510.1| GTP cyclohydrolase subunit MoaA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 353 Score = 35.0 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 19/95 (20%) Query: 32 CNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL C CD F+ +++ L++ G ++ R L Sbjct: 43 CNLRCMY--------CWTCDGLSFIPHDS----ILKYEEMLQLVDAAVGMGVEKVR---L 87 Query: 91 TGGEPLLQVDVP-LIQALNKRG--FEIAVETNGTI 122 TGGEP ++ D L+++L +R ++ + TN T+ Sbjct: 88 TGGEPFVRKDFLFLVESLVRRHPSLDVRITTNATL 122 >gi|328544106|ref|YP_004304215.1| Quinohemoprotein amine dehydrogenase, putative SAM-radical dependentactivating subunit [Polymorphum gilvum SL003B-26A1] gi|326413849|gb|ADZ70912.1| Quinohemoprotein amine dehydrogenase, putative SAM-radical dependentactivating subunit [Polymorphum gilvum SL003B-26A1] Length = 478 Score = 35.0 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 25/82 (30%) Query: 30 SGCNLWSGREQDRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITG-EK 83 +GCNL C +C DT +KG R ++ IE ++ Sbjct: 110 TGCNL-----------SCTYCYKEDLDTP------SKGRRMELETAKRSIELLLAESPDR 152 Query: 84 EGRYCVLTGGEPLLQVDVPLIQ 105 + V GGEPL ++ LI+ Sbjct: 153 DSYNIVFFGGEPL--SNLALIR 172 >gi|319646960|ref|ZP_08001188.1| hypothetical protein HMPREF1012_02225 [Bacillus sp. BT1B_CT2] gi|317391019|gb|EFV71818.1| hypothetical protein HMPREF1012_02225 [Bacillus sp. BT1B_CT2] Length = 373 Score = 35.0 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q V L ++E R +TGGEP+L + Sbjct: 45 RCEHCAVGYT-LQTKDPDALPVSLLLKRLDEI-----PRLRSLSITGGEPMLSLKSVKEY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 VPL++ ++RG + +N T++ Sbjct: 99 VVPLLKYAHERGVRTQINSNLTLDI 123 >gi|302539601|ref|ZP_07291943.1| L-lysine 2,3-aminomutase, putative/acetyltransferase, GNAT family [Streptomyces hygroscopicus ATCC 53653] gi|302457219|gb|EFL20312.1| L-lysine 2,3-aminomutase, putative/acetyltransferase, GNAT family [Streptomyces himastatinicus ATCC 53653] Length = 362 Score = 35.0 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 10/77 (12%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE--KEGRYCVLTGGEPLLQVDV 101 +A CR+C I+G + + I T ++ R ++TGG+PL+ +D Sbjct: 86 AAHCRWC------IRGQYDTTTLSREDLEFIARYCGTAPENQDVREVLVTGGDPLILIDR 139 Query: 102 P--LIQALNKRGFEIAV 116 L+ AL + ++ + Sbjct: 140 IEWLLDALEEHAPQVEI 156 >gi|52079259|ref|YP_078050.1| hypothetical protein BL03114 [Bacillus licheniformis ATCC 14580] gi|52784624|ref|YP_090453.1| hypothetical protein BLi00825 [Bacillus licheniformis ATCC 14580] gi|52002470|gb|AAU22412.1| conserved protein YfkA [Bacillus licheniformis ATCC 14580] gi|52347126|gb|AAU39760.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 373 Score = 35.0 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q V L ++E R +TGGEP+L + Sbjct: 45 RCEHCAVGYT-LQTKDPDALPVSLLLKRLDEI-----PRLRSLSITGGEPMLSLKSVKEY 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 VPL++ ++RG + +N T++ Sbjct: 99 VVPLLKYAHERGVRTQINSNLTLDI 123 >gi|325524720|gb|EGD02707.1| coproporphyrinogen III oxidase [Burkholderia sp. TJI49] Length = 404 Score = 35.0 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 17/106 (16%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87 L +C +CD KG R+ + D + ++ Sbjct: 28 PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPETEYLDALRADLEQALPLVWGRQVHT 84 Query: 88 CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124 + GG P L L + L EI +E N GT E Sbjct: 85 VFIGGGTPSLLSAGGLDRLLSDVRALLPLDADAEITLEANPGTFEA 130 >gi|229019959|ref|ZP_04176752.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1273] gi|229026193|ref|ZP_04182557.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1272] gi|228735121|gb|EEL85752.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1272] gi|228741343|gb|EEL91550.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1273] Length = 339 Score = 35.0 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 16/76 (21%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L + G ++ R +TG Sbjct: 24 DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKVFVSIGVRKIR---ITG 76 Query: 93 GEPLLQVDV-PLIQAL 107 GEPLL+ D+ LI L Sbjct: 77 GEPLLRKDLTKLIARL 92 >gi|171315532|ref|ZP_02904768.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia ambifaria MEX-5] gi|171099369|gb|EDT44107.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia ambifaria MEX-5] Length = 404 Score = 35.0 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 17/106 (16%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87 L +C +CD KG R+ + D + ++ Sbjct: 28 PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPETEYLDALRADLEQALPLVWGRQVHT 84 Query: 88 CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124 + GG P L L + L EI +E N GT E Sbjct: 85 VFIGGGTPSLLSAGGLDRLLSDVRALLPLDADAEITLEANPGTFEA 130 >gi|172059922|ref|YP_001807574.1| coproporphyrinogen III oxidase [Burkholderia ambifaria MC40-6] gi|171992439|gb|ACB63358.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia ambifaria MC40-6] Length = 404 Score = 35.0 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 17/106 (16%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87 L +C +CD KG R+ + D + ++ Sbjct: 28 PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPETEYLDALRADLEQALPLVWGRQVHT 84 Query: 88 CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124 + GG P L L + L EI +E N GT E Sbjct: 85 VFIGGGTPSLLSAGGLDRLLSDVRALLPLDADAEITLEANPGTFEA 130 >gi|115350909|ref|YP_772748.1| coproporphyrinogen III oxidase [Burkholderia ambifaria AMMD] gi|115280897|gb|ABI86414.1| putative oxygen-independent coproporphyrinogen III oxidase [Burkholderia ambifaria AMMD] Length = 404 Score = 35.0 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 17/106 (16%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87 L +C +CD KG R+ + D + ++ Sbjct: 28 PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPETEYLDALRADLEQALPLVWGRQVHT 84 Query: 88 CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124 + GG P L L + L EI +E N GT E Sbjct: 85 VFIGGGTPSLLSAGGLDRLLSDVRALLPLDADAEITLEANPGTFEA 130 >gi|313680864|ref|YP_004058603.1| 23S rRNA m(2)a-2503 methyltransferase [Oceanithermus profundus DSM 14977] gi|313153579|gb|ADR37430.1| 23S rRNA m(2)A-2503 methyltransferase [Oceanithermus profundus DSM 14977] Length = 370 Score = 35.0 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GE 94 Q A C FC T +G G +DQ+ + G +E R VL G GE Sbjct: 131 CISSQVGCPAGCTFCATGKMGFGRNLTGPEILDQILA-VAYHQGLGPREIRNVVLMGMGE 189 Query: 95 PLL 97 PLL Sbjct: 190 PLL 192 >gi|253682567|ref|ZP_04863364.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum D str. 1873] gi|253562279|gb|EES91731.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum D str. 1873] Length = 164 Score = 35.0 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 20/95 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 R +F SGC+ C C + G ++ + IE Sbjct: 20 RSTLF--LSGCH-----------HNCNECQNKHMQ-DFHYGEDIEINDILSRIESNIPL- 64 Query: 82 EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114 + +GGEPL Q L + + ++ +I Sbjct: 65 ---IKGVTFSGGEPLEQSRPLTFLAKKIKEQNLDI 96 >gi|77920358|ref|YP_358173.1| molybdopterin biosynthesis, protein A [Pelobacter carbinolicus DSM 2380] gi|77546441|gb|ABA90003.1| GTP cyclohydrolase subunit MoaA [Pelobacter carbinolicus DSM 2380] Length = 333 Score = 35.0 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 6/92 (6%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +CR+C G+ +V +++ + + +TGGEPL++ Sbjct: 25 DRCNLRCRYC-MPAEGVDTVSHT--DVLSYEEMLRVVAVAVRCGVKKVRITGGEPLVRKG 81 Query: 101 VP-LIQAL--NKRGFEIAVETNGTIEPPQGID 129 + IQ + E+ + TNG + D Sbjct: 82 IVGFIQEMTSISESVEVTLTTNGILLADMAAD 113 >gi|45358755|ref|NP_988312.1| radical SAM domain-containing protein [Methanococcus maripaludis S2] gi|45047621|emb|CAF30748.1| conserved hypothetical protein [Methanococcus maripaludis S2] Length = 371 Score = 35.0 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 21/135 (15%) Query: 47 CRFCD--TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102 C +C ++ + + +EE + G K +TGG PLL+++ V Sbjct: 36 CYYCPLSEKRKKKDVIFANEKQINSIEEAVEEARLCGSKG---VGITGGNPLLRIERTVE 92 Query: 103 LIQALNKR---GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159 ++AL + F + P+ VS K LK G E++L ++ Sbjct: 93 YLKALKEEFGSDFHAHL-----YTTPKF-----VSEKNLKLLKDAGLDEIRLHSSKLFND 142 Query: 160 PENYIGFDF-ERFSL 173 EN+ DF E+ L Sbjct: 143 FENFDKLDFLEKLKL 157 >gi|262172962|ref|ZP_06040639.1| GALNS arylsulfatase regulator (Fe-S oxidoreductase) [Vibrio mimicus MB-451] gi|261890320|gb|EEY36307.1| GALNS arylsulfatase regulator (Fe-S oxidoreductase) [Vibrio mimicus MB-451] Length = 395 Score = 35.0 bits (80), Expect = 6.6, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 12/91 (13%) Query: 42 RLSAQCRFCD--TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-- 97 + + C +C D L LI+ +I EK+ Y GGEP L Sbjct: 11 KCNINCEYCYYLEKETFFHHKHKTCITYDTLEQLIKS-YINQEKDDIYFTWQGGEPTLSG 69 Query: 98 ----QVDVPLIQALNKRGFEIA--VETNGTI 122 + + L QA RG I ++TNGT+ Sbjct: 70 IEFFEKVIELQQAF-SRGKRIHNAIQTNGTL 99 >gi|237737408|ref|ZP_04567889.1| molybdenum cofactor biosynthesis protein A [Fusobacterium mortiferum ATCC 9817] gi|229421270|gb|EEO36317.1| molybdenum cofactor biosynthesis protein A [Fusobacterium mortiferum ATCC 9817] Length = 324 Score = 35.0 bits (80), Expect = 6.6, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 7/58 (12%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 DR + +C++C D D V + K +V+++ +I+ G K+ R +TGGEPL Sbjct: 18 DRCNLRCKYCMGDKDIVFL--PKDELLSVEEIGRVIKIFSDLGIKKIR---ITGGEPL 70 >gi|317498641|ref|ZP_07956934.1| PTS system protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894128|gb|EFV16317.1| PTS system protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 101 Score = 35.0 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 13/82 (15%) Query: 103 LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN 162 L++A KRG EI +ET G I +D PK E +V V+V+ + Sbjct: 23 LMEAAKKRGHEIHMETQGVIGIEDELD-----PKDIV--------EADVVILAVDVNVKG 69 Query: 163 YIGFDFERFSLQPMDGPFLEEN 184 F ++ P + + N Sbjct: 70 KERFAGKKMIEVPTETVVMSPN 91 >gi|312136435|ref|YP_004003772.1| radical sam domain protein [Methanothermus fervidus DSM 2088] gi|311224154|gb|ADP77010.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088] Length = 490 Score = 35.0 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C C F + + +++ ++ Sbjct: 99 CNL-----------RCPTC---FANAATSGYLYEPSYEEIRKMLRLLRNNKPVPTPAIQY 144 Query: 91 TGGEPLLQVD-VPLIQALNKRGF-EIAVETNG 120 GGEP ++ D + LI+ + GF + + TNG Sbjct: 145 AGGEPTVRKDILELIKLAREEGFTHVQIATNG 176 >gi|291280473|ref|YP_003497308.1| pyruvate formate-lyase activating enzyme [Deferribacter desulfuricans SSM1] gi|290755175|dbj|BAI81552.1| pyruvate formate-lyase activating enzyme [Deferribacter desulfuricans SSM1] Length = 298 Score = 35.0 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 40/141 (28%), Gaps = 46/141 (32%) Query: 24 AVFCRFSGCNLWSGREQDRLS--------------AQCRFC------------DTDFVGI 57 VF GC L + S +C C DT V Sbjct: 22 TVF--LKGCPLRCMWCHNPESQKMTPQMSFFQSRCIRCVTCETVCPEKAIKIADTLEVHD 79 Query: 58 QGTKGGR----------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-- 99 T G +++ + + + + + +GGEP Q Sbjct: 80 NCTLCGTCVDECPADALEIIGYYIAAEEVIESVCKDELFFDSSKGGVTFSGGEPFAQPEF 139 Query: 100 DVPLIQALNKRGFEIAVETNG 120 L++ ++ +V+T+G Sbjct: 140 LRELLKLSKEKRLNTSVDTSG 160 >gi|316934848|ref|YP_004109830.1| molybdenum cofactor biosynthesis protein A [Rhodopseudomonas palustris DX-1] gi|315602562|gb|ADU45097.1| molybdenum cofactor biosynthesis protein A [Rhodopseudomonas palustris DX-1] Length = 344 Score = 35.0 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 26/152 (17%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ + +++L L G ++ R LTGGEPL+ Sbjct: 33 DRCDFRCVYCMAEDMTFL----PRSDLLTLEELDRLCSAFIAKGVRKLR---LTGGEPLV 85 Query: 98 QVD-VPLIQAL---NKRGF--EIAVETNGTI-------EPPQGIDWICVSPKAGCDL--- 141 + + + L+++L G E+ + TNG+ G+ + VS + Sbjct: 86 RRNMMSLVRSLSRHLDSGALDELTLTTNGSQLARFAAELADCGVRRVNVSLDTLDPVEFR 145 Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173 +I EL V ++ + + L Sbjct: 146 RITRWGELDRVLAGIDAARAAGLAVKINTVVL 177 >gi|167824828|ref|ZP_02456299.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 9] Length = 366 Score = 35.0 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 15/104 (14%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80 GR + R S DR +C +C + R +V L L Sbjct: 7 GRAVTYVRLS--------VADRCDFRCVYC----MAQDMRFPPRSDVLTLDALAALARAF 54 Query: 81 GEKEGRYCVLTGGEPLLQV-DVPLIQALNKR-GF-EIAVETNGT 121 R LTGGEPL++ L++ + + G E+A+ TNG Sbjct: 55 VALGVRRIRLTGGEPLVRPGLTTLVERIARLPGLDELALTTNGA 98 >gi|218961796|ref|YP_001741571.1| putative enzyme with radical SAM domain protein (Fe-S protein) [Candidatus Cloacamonas acidaminovorans] gi|167730453|emb|CAO81365.1| putative enzyme with radical SAM domain protein (Fe-S protein) [Candidatus Cloacamonas acidaminovorans] Length = 314 Score = 35.0 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 26/102 (25%) Query: 19 HAGRV---AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE 75 +G +F F+GCNL +C +C ++ G +V++L L+ Sbjct: 48 FSGTRGSGTIF--FAGCNL-----------RCVYC-QNYEISTLCWGKDISVEELIRLML 93 Query: 76 EQWITGEKEGRYCV---LTGGEPLLQVDVPLIQALNKRGFEI 114 + G T LQ+ +IQA ++G I Sbjct: 94 KLQEEGAHNINLVTPTHFT-----LQLREAIIQA-KEKGLTI 129 >gi|154174652|ref|YP_001407497.1| molybdenum cofactor biosynthesis protein A [Campylobacter curvus 525.92] gi|166217241|sp|A7GWA5|MOAA_CAMC5 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|112803789|gb|EAU01133.1| molybdenum cofactor biosynthesis protein A [Campylobacter curvus 525.92] Length = 322 Score = 35.0 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 10/84 (11%) Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 R + +CR+C T F + ++L ++ G + R LTGGEPL++ Sbjct: 20 RCNFRCRYCMPTTPFSWTPKEN--LLSFEELFLFVKVAIDEGVTKIR---LTGGEPLVRK 74 Query: 100 DVP-LIQALNK--RGFEIAVETNG 120 D+ ++ ++ ++A+ TNG Sbjct: 75 DLDVFVKMISDYKPDIDLALTTNG 98 >gi|327189312|gb|EGE56480.1| molybdenum cofactor biosynthesis protein [Rhizobium etli CNPAF512] Length = 561 Score = 35.0 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 9/86 (10%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C K +++L L G ++ R LTGGEPL++ + Sbjct: 251 DRCDFRCTYC-MAENMTFLPKKDLLTLEELDRLCSAFVAKGVRKIR---LTGGEPLVRKN 306 Query: 101 VP-LIQALNKR---GF-EIAVETNGT 121 + L++ L ++ G E+ + TNG+ Sbjct: 307 IMYLVRQLGEKIGSGLDELTLTTNGS 332 >gi|297616999|ref|YP_003702158.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Syntrophothermus lipocalidus DSM 12680] gi|297144836|gb|ADI01593.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Syntrophothermus lipocalidus DSM 12680] Length = 163 Score = 35.0 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 29/94 (30%), Gaps = 20/94 (21%) Query: 20 AGRV-AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78 G VF GC R C D G + + LA L+ + Sbjct: 16 TGIRITVF--LQGC--------VRGCEGCHNPD----LQPLEGGEVVSEEALAQLVLNKL 61 Query: 79 ITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKR 110 R +GGEPLL Q +I L + Sbjct: 62 ---SPLHRGVTFSGGEPLLQAQALEKVISILKRE 92 >gi|271967228|ref|YP_003341424.1| molybdopterin biosynthesis protein A [Streptosporangium roseum DSM 43021] gi|270510403|gb|ACZ88681.1| molybdopterin biosynthesis, protein A [Streptosporangium roseum DSM 43021] Length = 331 Score = 35.0 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 11/86 (12%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE-EQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C K D++ L+ G E RY TGGEPLL Sbjct: 21 DRCNLRCSYCMPPEGLEWLPKPDLLTADEIVRLVTVGVERLGITEVRY---TGGEPLL-- 75 Query: 100 DVPLIQAL-----NKRGFEIAVETNG 120 L++ + + G ++++ TNG Sbjct: 76 RRELLEIVARTTALRPGPQVSLTTNG 101 >gi|104783026|ref|YP_609524.1| molybdenum cofactor biosynthesis protein A [Pseudomonas entomophila L48] gi|123255388|sp|Q1I6J5|MOAA_PSEE4 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|95112013|emb|CAK16740.1| putative molybdopterin biosynthesis protein A [Pseudomonas entomophila L48] Length = 334 Score = 35.0 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 13/87 (14%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ Q ++++L + E G ++ R LTGGEPL+ Sbjct: 25 DRCDFRCVYCMAEDMQFLPRQ----QILSLEELYQVAERFVALGTRKIR---LTGGEPLV 77 Query: 98 -QVDVPLIQALNKR-GF-EIAVETNGT 121 Q V L + G E+ + +NG+ Sbjct: 78 RQGIVELCGRIAALPGLRELCLTSNGS 104 >gi|262403967|ref|ZP_06080522.1| coenzyme PQQ synthesis protein E [Vibrio sp. RC586] gi|262348999|gb|EEY98137.1| coenzyme PQQ synthesis protein E [Vibrio sp. RC586] Length = 375 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 8/89 (8%) Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 W E + C +C ++ + ++ +++ + G + L+ Sbjct: 12 PFWLLLELTYQCPLHCAYCSNP---LELEGEQELSTEEWFEVMTQARQLGAVQLG---LS 65 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETN 119 GGEPL++ D+ ++ ++ GF + T+ Sbjct: 66 GGEPLMRKDLEQIVAKAHELGFYTNLITS 94 >gi|254385687|ref|ZP_05001009.1| hypothetical protein SSAG_05195 [Streptomyces sp. Mg1] gi|194344554|gb|EDX25520.1| hypothetical protein SSAG_05195 [Streptomyces sp. Mg1] Length = 391 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 9/72 (12%) Query: 33 NLWSGREQDRLSAQCRF----CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 + G L+ +C C T T G + D L I E Sbjct: 41 PVPCGGLLVALTRRCPLSCAHCST---SSSMTVSGEPDPDHLLRFIGSFG--AEDRPEVV 95 Query: 89 VLTGGEPLLQVD 100 +LTGGEPLL + Sbjct: 96 MLTGGEPLLLPE 107 >gi|300728085|ref|ZP_07061458.1| putative arylsulfatase regulator [Prevotella bryantii B14] gi|299774687|gb|EFI71306.1| putative arylsulfatase regulator [Prevotella bryantii B14] Length = 423 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 26/97 (26%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C + + D + + I I G +Y +T Sbjct: 88 CNL-----------HCAYC------FEQQHPSVFMNDDVENDIISF-IKGHVNAKYVHIT 129 Query: 92 --GGEPLLQ--VDVPLIQALNK----RGFEIAVETNG 120 GGEPLL V L + + +E + TNG Sbjct: 130 WFGGEPLLYFKRIVSLTKKIKSIQGIEKYEAEIITNG 166 >gi|254736837|ref|ZP_05194543.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. Western North America USA6153] Length = 247 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ + + G ++ R LTG Sbjct: 30 DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 82 Query: 93 GEPLLQVDVP-LIQALNKRG--FEIAVETN 119 GEPLL+ D+ LI L K +I + TN Sbjct: 83 GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 112 >gi|228917377|ref|ZP_04080930.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842304|gb|EEM87399.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 339 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ + + G ++ R LTG Sbjct: 24 DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 76 Query: 93 GEPLLQVDVP-LIQALNKRG--FEIAVETN 119 GEPLL+ D+ LI L K +I + TN Sbjct: 77 GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 106 >gi|228948475|ref|ZP_04110757.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811234|gb|EEM57573.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 339 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ + + G ++ R LTG Sbjct: 24 DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 76 Query: 93 GEPLLQVDVP-LIQALNKRG--FEIAVETN 119 GEPLL+ D+ LI L K +I + TN Sbjct: 77 GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 106 >gi|229124294|ref|ZP_04253485.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus 95/8201] gi|228659195|gb|EEL14844.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus 95/8201] Length = 339 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ + + G ++ R LTG Sbjct: 24 DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 76 Query: 93 GEPLLQVDVP-LIQALNKRG--FEIAVETN 119 GEPLL+ D+ LI L K +I + TN Sbjct: 77 GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 106 >gi|226323350|ref|ZP_03798868.1| hypothetical protein COPCOM_01124 [Coprococcus comes ATCC 27758] gi|225208034|gb|EEG90388.1| hypothetical protein COPCOM_01124 [Coprococcus comes ATCC 27758] Length = 469 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 18/98 (18%) Query: 32 CN---LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGR 86 CN L + C C G + N+ +++ +I + G Sbjct: 110 CNIPWLILMDPTSACNLHCTGC------WAAEYGHKLNLTYEEMDSIITQGKELGIYFYM 163 Query: 87 YCVLTGGEPLLQVDVPLIQALNKRGFEIAVE--TNGTI 122 Y TGGEPL++ I L ++ ++ TNGT+ Sbjct: 164 Y---TGGEPLVRKKD--IIRLCEKHYDCEFHAFTNGTL 196 >gi|224047046|ref|XP_002186662.1| PREDICTED: molybdenum cofactor synthesis 1 [Taeniopygia guttata] Length = 755 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N ++ + +C++C G+Q T Q ++I + ++ LTG Sbjct: 128 NYLRISLTEKCNLRCQYC-MPEEGVQLTPKSELLTTQ--EIITLARLFVKEGVDKIRLTG 184 Query: 93 GEPLLQVD-VPLIQAL-NKRGFE-IAVETNG 120 GEPL++ D V ++ L G + IAV TNG Sbjct: 185 GEPLIRPDVVDIVGELYKLEGLKTIAVTTNG 215 >gi|196043992|ref|ZP_03111229.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus 03BB108] gi|225866714|ref|YP_002752092.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus 03BB102] gi|196025328|gb|EDX63998.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus 03BB108] gi|225787425|gb|ACO27642.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus 03BB102] Length = 337 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ + + G ++ R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQALNKRG--FEIAVETN 119 GEPLL+ D+ LI L K +I + TN Sbjct: 75 GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 104 >gi|196040891|ref|ZP_03108189.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus NVH0597-99] gi|301056234|ref|YP_003794445.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis CI] gi|196028345|gb|EDX66954.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus NVH0597-99] gi|300378403|gb|ADK07307.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus biovar anthracis str. CI] Length = 337 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ + + G ++ R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQALNKRG--FEIAVETN 119 GEPLL+ D+ LI L K +I + TN Sbjct: 75 GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 104 >gi|167633892|ref|ZP_02392215.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0442] gi|170685934|ref|ZP_02877157.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0465] gi|254687534|ref|ZP_05151390.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. CNEVA-9066] gi|254725099|ref|ZP_05186882.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A1055] gi|254741872|ref|ZP_05199559.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. Kruger B] gi|167530693|gb|EDR93395.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0442] gi|170670398|gb|EDT21138.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. A0465] Length = 337 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ + + G ++ R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQALNKRG--FEIAVETN 119 GEPLL+ D+ LI L K +I + TN Sbjct: 75 GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 104 >gi|196032982|ref|ZP_03100395.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus W] gi|218905955|ref|YP_002453789.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH820] gi|195994411|gb|EDX58366.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus W] gi|218538708|gb|ACK91106.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH820] Length = 337 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ + + G ++ R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQALNKRG--FEIAVETN 119 GEPLL+ D+ LI L K +I + TN Sbjct: 75 GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 104 >gi|118479860|ref|YP_897011.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis str. Al Hakam] gi|118419085|gb|ABK87504.1| GTP cyclohydrolase subunit MoaA [Bacillus thuringiensis str. Al Hakam] Length = 339 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ + + G ++ R LTG Sbjct: 24 DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 76 Query: 93 GEPLLQVDVP-LIQALNKRG--FEIAVETN 119 GEPLL+ D+ LI L K +I + TN Sbjct: 77 GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 106 >gi|49478739|ref|YP_038771.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228936036|ref|ZP_04098846.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|49330295|gb|AAT60941.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228823804|gb|EEM69626.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 339 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ + + G ++ R LTG Sbjct: 24 DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 76 Query: 93 GEPLLQVDVP-LIQALNKRG--FEIAVETN 119 GEPLL+ D+ LI L K +I + TN Sbjct: 77 GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 106 >gi|52140778|ref|YP_086052.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus E33L] gi|51974247|gb|AAU15797.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus E33L] Length = 337 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ + + G ++ R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 74 Query: 93 GEPLLQVDVP-LIQALNKRG--FEIAVETN 119 GEPLL+ D+ LI L K +I + TN Sbjct: 75 GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 104 >gi|159904144|ref|YP_001551488.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str. MIT 9211] gi|205829806|sp|A9BCH2|RLMN_PROM4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|159889320|gb|ABX09534.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str. MIT 9211] Length = 356 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 9/71 (12%) Query: 28 RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 R + C Q S CRFC +G V ++ D + ++ + Sbjct: 109 RLTTC----VSSQVGCSMGCRFC----ATGKGGFQRSLEVHEIVDQVLSIREAFDRRPSH 160 Query: 88 CVLTG-GEPLL 97 V G GEPLL Sbjct: 161 IVFMGMGEPLL 171 >gi|241204967|ref|YP_002976063.1| molybdenum cofactor biosynthesis protein A [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858857|gb|ACS56524.1| molybdenum cofactor biosynthesis protein A [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 348 Score = 35.0 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C K +++L L G + R LTGGEPL++ + Sbjct: 38 DRCDFRCTYC-MAENMTFLPKKDLLTLEELDRLCSAFIARGVSKIR---LTGGEPLVRKN 93 Query: 101 VP-LIQALNK---RGF-EIAVETNGT 121 + L++ L + G E+ + TNG+ Sbjct: 94 IMYLVRQLGQKIGAGLDELTLTTNGS 119 >gi|126178843|ref|YP_001046808.1| radical SAM domain-containing protein [Methanoculleus marisnigri JR1] gi|125861637|gb|ABN56826.1| Radical SAM domain protein [Methanoculleus marisnigri JR1] Length = 385 Score = 35.0 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 21/69 (30%) Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 GC ++C +C + ++ + ++ E + + + Sbjct: 14 GCP-----------SKCHYC-----WSSDERSPVMSIKTVREIAE---WLKDYQSNQVTI 54 Query: 91 T--GGEPLL 97 T GGEPLL Sbjct: 55 TFHGGEPLL 63 >gi|330828904|ref|YP_004391856.1| GTP cyclohydrolase subunit MoaA [Aeromonas veronii B565] gi|328804040|gb|AEB49239.1| GTP cyclohydrolase subunit MoaA [Aeromonas veronii B565] Length = 331 Score = 35.0 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 6/85 (7%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 D + +C +C D + +G K GR + ++ R +TGGEP L+ Sbjct: 21 DVCNFRCTYCLPD-GYRPPEGHKTGRQPFLSIDEIRRVVSGFAAMGTRKVRITGGEPSLR 79 Query: 99 VDVPLIQALNK--RGFE-IAVETNG 120 D I + G E +A+ TNG Sbjct: 80 RDFTEIVKVIATTPGIEKVAMTTNG 104 >gi|319948393|ref|ZP_08022534.1| molybdenum cofactor biosynthesis protein A [Dietzia cinnamea P4] gi|319437947|gb|EFV92926.1| molybdenum cofactor biosynthesis protein A [Dietzia cinnamea P4] Length = 356 Score = 35.0 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 ++ S +C +C + R D++ L+ E TGGEPL++ D Sbjct: 43 EKCSLRCTYCMPEEGLPPIPDAARMTADEVIRLV--TLAHRELGVHEVRFTGGEPLMRSD 100 Query: 101 VP 102 + Sbjct: 101 LE 102 >gi|313204086|ref|YP_004042743.1| transcriptional regulator [Paludibacter propionicigenes WB4] gi|312443402|gb|ADQ79758.1| transcriptional regulator [Paludibacter propionicigenes WB4] Length = 407 Score = 35.0 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 24/102 (23%) Query: 32 CNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL +C +C D R + + L IE+ E Sbjct: 25 CNL-----------RCSYCYYLD-KKSLSPNNSSNRMSEETLELFIEQYINAQPGEEVLF 72 Query: 89 VLTGGEPLL------QVDVPLIQALNKRGFEIA--VETNGTI 122 GGEPLL Q + L Q + R I ++TNGT+ Sbjct: 73 TWHGGEPLLMGIEYYQRAIRL-QKVYGRNRRIENVLQTNGTL 113 >gi|253579936|ref|ZP_04857204.1| molybdenum cofactor biosynthesis protein A [Ruminococcus sp. 5_1_39B_FAA] gi|251848935|gb|EES76897.1| molybdenum cofactor biosynthesis protein A [Ruminococcus sp. 5_1_39BFAA] Length = 324 Score = 35.0 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 15/105 (14%) Query: 41 DRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C G++ + D++ + + R LTGGEPL++ Sbjct: 18 DRCNLRCIYC-MPEEGVKSLSHAEILTYDEILRI---CRCAADLGIRKIKLTGGEPLVRK 73 Query: 100 DVP-LIQALNK-RGFE-IAVETNGTIEPPQ-------GIDWICVS 134 L + + G E + + TNG + Q GID I +S Sbjct: 74 GCASLAKQIKAIPGIEKVTLTTNGILLAEQLDALLDAGIDAINIS 118 >gi|170289997|ref|YP_001736813.1| radical SAM domain-containing protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170174077|gb|ACB07130.1| Radical SAM domain protein [Candidatus Korarchaeum cryptofilum OPF8] Length = 329 Score = 35.0 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 19/89 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C + + G +++ L+ E +G ++ T Sbjct: 18 CNL-----------NCPYCYSTHYLRERPLGR----EEVMRLLREAASSG---IKHIDYT 59 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETN 119 GGEPL + D+ +++ G ++ TN Sbjct: 60 GGEPLTRRDISEILEETADLGISASIFTN 88 >gi|167767569|ref|ZP_02439622.1| hypothetical protein CLOSS21_02088 [Clostridium sp. SS2/1] gi|167710861|gb|EDS21440.1| hypothetical protein CLOSS21_02088 [Clostridium sp. SS2/1] gi|291558476|emb|CBL37276.1| PTS system, fructose-specific, IIB component [butyrate-producing bacterium SSC/2] Length = 101 Score = 35.0 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 13/82 (15%) Query: 103 LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN 162 L++A KRG EI +ET G I +D PK E +V V+V+ + Sbjct: 23 LMEAAKKRGHEIHMETQGVIGIEDELD-----PKDIA--------EADVVILAVDVNVKG 69 Query: 163 YIGFDFERFSLQPMDGPFLEEN 184 F ++ P + + N Sbjct: 70 KERFAGKKMIEVPTETVVMSPN 91 >gi|119776656|ref|YP_929396.1| molybdenum cofactor biosynthesis protein A [Shewanella amazonensis SB2B] gi|119769156|gb|ABM01727.1| GTP cyclohydrolase subunit MoaA [Shewanella amazonensis SB2B] Length = 340 Score = 35.0 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 4/61 (6%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D + +C +C + GR + L+++ + R +TGGEP L+ D Sbjct: 35 DVCNFKCSYC----LPDGYHPDGRPSFLTLSEIENLIAAFAKAGTRKVRITGGEPTLRKD 90 Query: 101 V 101 Sbjct: 91 F 91 >gi|219667457|ref|YP_002457892.1| molybdenum cofactor biosynthesis protein A [Desulfitobacterium hafniense DCB-2] gi|219537717|gb|ACL19456.1| molybdenum cofactor biosynthesis protein A [Desulfitobacterium hafniense DCB-2] Length = 323 Score = 35.0 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 12/95 (12%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C++C G+Q R +++ ++ G + R +TGGEPL++ Sbjct: 18 DRCNLRCKYC-MPAEGVQWIPHERILTYEEILRVMRISTTLGFRRFR---ITGGEPLIRS 73 Query: 100 DVPLIQALNKRGFEIAVE-----TNGTIEPPQGID 129 V ++ L VE TNG + D Sbjct: 74 GV--LEFLQNASQIPGVEDLMLTTNGILLADMAED 106 >gi|289192830|ref|YP_003458771.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22] gi|288939280|gb|ADC70035.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22] Length = 301 Score = 35.0 bits (80), Expect = 7.0, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 29/96 (30%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL C +C + ++ + G Y + A+ + Sbjct: 62 TQKCNL-----------NCIYC---YSRLKTVERGIYGNLEEAEAVTISQY--------- 98 Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 GEPLL ++ I+ G + ++TNGT+ Sbjct: 99 ----GEPLLDLEGVKKAIEFCKDLGLRVDLQTNGTL 130 >gi|168182297|ref|ZP_02616961.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum Bf] gi|237793412|ref|YP_002860964.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum Ba4 str. 657] gi|182674593|gb|EDT86554.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum Bf] gi|229261656|gb|ACQ52689.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium botulinum Ba4 str. 657] Length = 171 Score = 35.0 bits (80), Expect = 7.0, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 29/95 (30%), Gaps = 20/95 (21%) Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 R VF SGC Q++ FC G + ++ + IE Sbjct: 23 RSVVFV--SGCKHNCKECQNKEMQ--SFC----------YGDKISLKDILKRIESNVPLI 68 Query: 82 EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114 +GGEPL L + + G I Sbjct: 69 SG----VTFSGGEPLEHIKELSSLAEEIKSLGLNI 99 >gi|150009791|ref|YP_001304534.1| putative Fe-S oxidoreductase [Parabacteroides distasonis ATCC 8503] gi|149938215|gb|ABR44912.1| putative Fe-S oxidoreductase [Parabacteroides distasonis ATCC 8503] Length = 403 Score = 35.0 bits (80), Expect = 7.0, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 11/93 (11%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R +A+C C + K D++ + E ++GGEP L+ D+ Sbjct: 29 RCNAKCAMC--FYAQEMDKKQPDLTFDEIKKISETAGQFNRLW-----ISGGEPTLREDL 81 Query: 102 PLIQALNKRG---FEIAVETNGTIEPPQGIDWI 131 P I L + ++ + TNG ++P + ++W+ Sbjct: 82 PEILELFYKNNHIKDVNIPTNG-LKPDRIVEWV 113 >gi|317497887|ref|ZP_07956197.1| glycosyl transferase group 1 [Lachnospiraceae bacterium 5_1_63FAA] gi|316894868|gb|EFV17040.1| glycosyl transferase group 1 [Lachnospiraceae bacterium 5_1_63FAA] Length = 585 Score = 35.0 bits (80), Expect = 7.1, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 13/108 (12%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R +A+C C + T +++ + L + +TGGEP ++ D+ Sbjct: 209 RCNARCNMC--NRYKKPSTPDEEISLETIKKL---------PPMYFTNITGGEPFIRTDL 257 Query: 102 -PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148 +++ L K+ I + TNG + +D P G + I+G +E Sbjct: 258 KDIVRELQKKSDRIVISTNG-FFTDRIVDLCKEFPNVGIRISIEGLEE 304 >gi|197336065|ref|YP_002155383.1| radical SAM enzyme, Cfr family [Vibrio fischeri MJ11] gi|254807222|sp|B5FAW9|RLMN_VIBFM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|197317555|gb|ACH67002.1| radical SAM enzyme, Cfr family [Vibrio fischeri MJ11] Length = 372 Score = 35.0 bits (80), Expect = 7.1, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 17/110 (15%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI---TGEKEGRYCVLTG 92 Q + +C+FC T G V Q+ E + TG + V+ G Sbjct: 107 CVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIGLEKETGRRPITNVVMMG 166 Query: 93 -GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIEPPQGIDWIC 132 GEPLL LI AL GF + V T+G G+D + Sbjct: 167 MGEPLL-NMKNLIPALEIMLDDLGFALSKRRVTVSTSG---VVSGLDQMT 212 >gi|59711233|ref|YP_204009.1| hypothetical protein VF_0626 [Vibrio fischeri ES114] gi|75354452|sp|Q5E775|RLMN_VIBF1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|59479334|gb|AAW85121.1| predicted enzyme [Vibrio fischeri ES114] Length = 372 Score = 35.0 bits (80), Expect = 7.1, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 17/110 (15%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI---TGEKEGRYCVLTG 92 Q + +C+FC T G V Q+ E + TG + V+ G Sbjct: 107 CVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIGLEKETGRRPITNVVMMG 166 Query: 93 -GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIEPPQGIDWIC 132 GEPLL LI AL GF + V T+G G+D + Sbjct: 167 MGEPLL-NMKNLIPALEIMLDDLGFALSKRRVTVSTSG---VVSGLDQMT 212 >gi|54026287|ref|YP_120529.1| molybdenum cofactor biosynthesis protein A [Nocardia farcinica IFM 10152] gi|54017795|dbj|BAD59165.1| putative molybdopterin biosynthesis protein [Nocardia farcinica IFM 10152] Length = 347 Score = 35.0 bits (80), Expect = 7.1, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 ++ S +C +C G+ VD++ L+ E R TGGEPLL+ Sbjct: 39 EKCSLRCTYC-MPEEGLPPIPAEELLTVDEIVRLVA--LAVEELGVREVRFTGGEPLLRR 95 Query: 100 DVP-LIQALNKR 110 D+ +I + R Sbjct: 96 DLERIIAGCHAR 107 >gi|260888086|ref|ZP_05899349.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Selenomonas sputigena ATCC 35185] gi|330839965|ref|YP_004414545.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Selenomonas sputigena ATCC 35185] gi|260862115|gb|EEX76615.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Selenomonas sputigena ATCC 35185] gi|329747729|gb|AEC01086.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Selenomonas sputigena ATCC 35185] Length = 167 Score = 35.0 bits (80), Expect = 7.2, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 21/93 (22%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F GC C C + G + + + G Sbjct: 23 TIF--TQGCP-----------HHCPGC-QNPKTHDFAGGLEMDTKTILKDV-----LGNP 63 Query: 84 EGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114 L+GGEP Q L ++ G ++ Sbjct: 64 LLTGVTLSGGEPFCQAAPLASLAHEVHAHGMDV 96 >gi|188585752|ref|YP_001917297.1| Radical SAM domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350439|gb|ACB84709.1| Radical SAM domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 393 Score = 35.0 bits (80), Expect = 7.2, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 17/92 (18%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C C + G + + I++ + + Sbjct: 48 CNL-----------NCIHC--YSDSDSNSYSGELSTKEAKTFIDDLQA---FNVPVLLFS 91 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GGEPLL+ D L + ++G + TNGT+ Sbjct: 92 GGEPLLRNDFFELAEYAAQKGIRSTISTNGTL 123 >gi|126460321|ref|YP_001056599.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|126250042|gb|ABO09133.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548] Length = 378 Score = 35.0 bits (80), Expect = 7.2, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 5/91 (5%) Query: 28 RFSGCNLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 RF L E + C+ C I G + ++ LIE+ G+ Sbjct: 10 RFHEAPLLVFWESTKACPLACKHC--RADAILKPLPGELSTEEGKRLIEQVAEFGD-PKP 66 Query: 87 YCVLTGGEPLLQVDV-PLIQALNKRGFEIAV 116 ++TGG+PL++ D+ L+ N G +++ Sbjct: 67 LLIITGGDPLMRADLFELVDYANSLGVPVSL 97 >gi|2253437|gb|AAC38153.1| ORF2 [Rahnella aquatilis] Length = 396 Score = 35.0 bits (80), Expect = 7.2, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 17/99 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 C + + L DF + Q + EE G + + Sbjct: 41 CPVQCPYWSNPL---------DFAKQEKE----LTTAQWIKVFEEAREMGAVQ---IGFS 84 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGID 129 GGEPL++ D+P LI+ GF + T+G + ID Sbjct: 85 GGEPLVRKDLPELIRGARDLGFYTNLITSGIGLTEKKID 123 >gi|329927267|ref|ZP_08281548.1| radical SAM domain protein [Paenibacillus sp. HGF5] gi|328938570|gb|EGG34954.1| radical SAM domain protein [Paenibacillus sp. HGF5] Length = 471 Score = 35.0 bits (80), Expect = 7.2, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 15/107 (14%) Query: 27 CRFSGCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIE 75 R GC G D C C F + ++ Q+ + + Sbjct: 78 IR-YGCPYDCGLCPDHEQHSCLTLLEITDHCNLQCPICFAESSPHRTSYRSLAQI-EFML 135 Query: 76 EQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETNG 120 ++ + E E ++GGEP D ++ R I V TNG Sbjct: 136 DRIVENEGEPDIVQISGGEPTTHPDFFDILDMCKSRPIKHIMVNTNG 182 >gi|291534716|emb|CBL07828.1| Predicted Fe-S oxidoreductases [Roseburia intestinalis M50/1] Length = 465 Score = 35.0 bits (80), Expect = 7.2, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 18/98 (18%) Query: 32 CN---LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGR 86 CN L + C C G + N+ D+L ++ + G Sbjct: 110 CNIPWLILMDPTSACNLHCTGC------WAAEYGNKLNLSFDELDSIVTQGKELGIYFYM 163 Query: 87 YCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122 TGGEPL+ + L + N F TNGT+ Sbjct: 164 M---TGGEPLVRKADIIKLCEKHNDCAFHCY--TNGTL 196 >gi|229152925|ref|ZP_04281107.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1550] gi|228630538|gb|EEK87185.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1550] Length = 339 Score = 35.0 bits (80), Expect = 7.2, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L + G ++ R +TG Sbjct: 24 DRCNFRCTYCMPAEIFGPD--YAFLKDEF--LLTFDEIERLAKLFVNIGVRKIR---ITG 76 Query: 93 GEPLLQVDV-PLIQALNKRG--FEIAVETN 119 GEPLL+ D+ LI L K +I + TN Sbjct: 77 GEPLLRKDLTKLIARLVKIDGLIDIGLTTN 106 >gi|261404972|ref|YP_003241213.1| Radical SAM domain-containing protein [Paenibacillus sp. Y412MC10] gi|261281435|gb|ACX63406.1| Radical SAM domain protein [Paenibacillus sp. Y412MC10] Length = 471 Score = 35.0 bits (80), Expect = 7.2, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 31/107 (28%), Gaps = 15/107 (14%) Query: 27 CRFSGCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIE 75 R GC G D C C F Y + + Sbjct: 78 IR-YGCPYDCGLCPDHEQHSCLTLLEITDHCNLQCPICFA-ESSPHRTSYRSLTQIEFML 135 Query: 76 EQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETNG 120 ++ + E E ++GGEP D ++ R I V TNG Sbjct: 136 DRIVENEGEPDIVQISGGEPTTHPDFFDILDMCKSRPIKHIMVNTNG 182 >gi|171686210|ref|XP_001908046.1| hypothetical protein [Podospora anserina S mat+] gi|170943066|emb|CAP68719.1| unnamed protein product [Podospora anserina S mat+] Length = 709 Score = 35.0 bits (80), Expect = 7.2, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 19/94 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + + ++ L G + R LT Sbjct: 130 CNL-----------RCLYCMPEEGVPLSPQKELLTTPEIVMLSSLFVSQGVTKIR---LT 175 Query: 92 GGEPLLQVDV-PLIQ---ALNKRGF-EIAVETNG 120 GGEP ++ D+ PL+Q AL G E+ + TNG Sbjct: 176 GGEPTVRRDIVPLMQQIGALRAHGLRELCLTTNG 209 >gi|315127649|ref|YP_004069652.1| oxygen-independent coproporphyrinogen III oxidase [Pseudoalteromonas sp. SM9913] gi|315016163|gb|ADT69501.1| oxygen-independent coproporphyrinogen III oxidase [Pseudoalteromonas sp. SM9913] Length = 378 Score = 35.0 bits (80), Expect = 7.3, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 10/109 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91 L +C +CD + G +G V L D ++ + + + + Sbjct: 5 PLSLYVHVPWCVQKCPYCDFNSHGQKGDIPEAEYVQHLIDDLKADLHLVQGRKIHSIFIG 64 Query: 92 GGEPLLQVDVPLIQALNK--------RGFEIAVETN-GTIEPPQGIDWI 131 GG P L + L + EI +E N GT+E + D++ Sbjct: 65 GGTPSLLTGAAYTRLLKEVDSLIGLSDNCEITLEANPGTVETGRFKDYV 113 >gi|313905905|ref|ZP_07839261.1| Radical SAM domain protein [Eubacterium cellulosolvens 6] gi|313469246|gb|EFR64592.1| Radical SAM domain protein [Eubacterium cellulosolvens 6] Length = 111 Score = 35.0 bits (80), Expect = 7.3, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 26/95 (27%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGRYCV 89 CNL C+ C G + N+ +++ ++IE+ G + + Sbjct: 15 CNL-----------HCQGC------WAAEYGNKLNLSFEEIDNIIEQGKDLGVY---FYI 54 Query: 90 LTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122 TGGEPL+ + + L + + ++ TNGT+ Sbjct: 55 YTGGEPLIRKKDIIALCEK-HSDCVFLSF-TNGTL 87 >gi|289422611|ref|ZP_06424453.1| radical SAM domain protein [Peptostreptococcus anaerobius 653-L] gi|289156962|gb|EFD05585.1| radical SAM domain protein [Peptostreptococcus anaerobius 653-L] Length = 410 Score = 35.0 bits (80), Expect = 7.3, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 17/70 (24%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C T+ + G Y++ D ++E + ++T Sbjct: 97 CNL-----------RCSHCITNSGEKVKEELGLYSILDFIDKLKEIKVNK------LIIT 139 Query: 92 GGEPLLQVDV 101 GGEPL++ D Sbjct: 140 GGEPLMKKDF 149 >gi|256838458|ref|ZP_05543968.1| radical SAM domain-containing protein [Parabacteroides sp. D13] gi|256739377|gb|EEU52701.1| radical SAM domain-containing protein [Parabacteroides sp. D13] Length = 403 Score = 35.0 bits (80), Expect = 7.3, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 11/93 (11%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R +A+C C + K D++ + E ++GGEP L+ D+ Sbjct: 29 RCNAKCAMC--FYAQEMDKKQPDLTFDEIKKISETAGQFNRLW-----ISGGEPTLREDL 81 Query: 102 PLIQALNKRG---FEIAVETNGTIEPPQGIDWI 131 P I L + ++ + TNG ++P + ++W+ Sbjct: 82 PEILELFYKNNHIKDVNIPTNG-LKPDRIVEWV 113 >gi|255994384|ref|ZP_05427519.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Eubacterium saphenum ATCC 49989] gi|255993097|gb|EEU03186.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Eubacterium saphenum ATCC 49989] Length = 177 Score = 35.0 bits (80), Expect = 7.3, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 27/97 (27%) Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81 +FC GC C+ C DT + VD+L I + + Sbjct: 33 IFC--QGCP-----------HGCKACHNPDT----HAFEENKLIGVDELFKSIMKPRLGK 75 Query: 82 EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAV 116 +GGEP Q L + L G +I + Sbjct: 76 G-----VTFSGGEPFCQAVPFAKLGEKLKAAGIDILI 107 >gi|323706427|ref|ZP_08117989.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323534212|gb|EGB24001.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 459 Score = 35.0 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 29/113 (25%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVL 90 CNL +C +C F KGGR ++ + I + + Sbjct: 104 CNL-----------RCSYC---FASTGDFKGGRKLMPYEVGKKAIDFLIKNSGNRKIVEV 149 Query: 91 T--GGEPLLQVDVPLIQALNKRG----------FEIAVETNGTIEPPQGIDWI 131 GGEPLL + +++ L G + + TNG + + +I Sbjct: 150 DFFGGEPLL--NFDVVKKLVDYGREEAKKYGKTIKYTITTNGVLLDEEKATYI 200 >gi|313900899|ref|ZP_07834389.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium sp. HGF2] gi|312954319|gb|EFR35997.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Clostridium sp. HGF2] Length = 182 Score = 35.0 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 18/77 (23%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 GC C C G Y+V+QL I + + Sbjct: 29 TQGC-----------RHHCPNCHNPQTW-DTEGGTLYSVEQLQQQIRDAQLQSG-----L 71 Query: 89 VLTGGEPLLQVDVPLIQ 105 L+GGEP LQV+ PL++ Sbjct: 72 TLSGGEPFLQVE-PLLE 87 >gi|291458711|ref|ZP_06598101.1| molybdenum cofactor biosynthesis protein A [Oribacterium sp. oral taxon 078 str. F0262] gi|291418628|gb|EFE92347.1| molybdenum cofactor biosynthesis protein A [Oribacterium sp. oral taxon 078 str. F0262] Length = 305 Score = 35.0 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 56/144 (38%), Gaps = 20/144 (13%) Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGT- 121 + ++L D+ G + +TGGEPL++ D P I L + G E + + +NG Sbjct: 16 SYEELLDVARAAAALGITRFK---VTGGEPLVRRDCPEFIGELKRIPGVEQVTMTSNGVL 72 Query: 122 ------IEPPQGIDWICVS---PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172 G+D + VS K +I G EL V ++ + + Sbjct: 73 LTRLLPRLLENGLDAVNVSLDTLKRERFSEITGMDELPAVLSGIDEALRAGLKLKLNAV- 131 Query: 173 LQPMDGPFLEENTNLAISYCFQNP 196 LQP G EE L +S P Sbjct: 132 LQP--GVNEEERWEL-LSLAKDRP 152 >gi|262381373|ref|ZP_06074511.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296550|gb|EEY84480.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 368 Score = 35.0 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 5/90 (5%) Query: 36 SGREQDRLSAQCRFCD-TDFVGIQGTKGG-RYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 + +C +C T +Y+ +Q+ + + + G C GG Sbjct: 10 CYVPVTTCTLRCHYCYITQHRLFDNKLPTFKYSSEQVRKSLSRERLGGVCLINLCG--GG 67 Query: 94 EPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 E LL ++ ++AL + G + + TN T+ Sbjct: 68 ETLLPPEMTEYVRALLEEGHYVMIVTNATV 97 >gi|257413119|ref|ZP_04742069.2| radical SAM domain protein [Roseburia intestinalis L1-82] gi|257204501|gb|EEV02786.1| radical SAM domain protein [Roseburia intestinalis L1-82] Length = 474 Score = 35.0 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 18/98 (18%) Query: 32 CN---LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGR 86 CN L + C C G + N+ D+L ++ + G Sbjct: 119 CNIPWLILMDPTSACNLHCTGC------WAAEYGNKLNLSFDELDSIVTQGKELGIYFYM 172 Query: 87 YCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122 TGGEPL+ + L + N F TNGT+ Sbjct: 173 M---TGGEPLVRKADIIKLCEKHNDCAFHCY--TNGTL 205 >gi|194443015|ref|YP_002042363.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401678|gb|ACF61900.1| putative oxygen-independent coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 378 Score = 35.0 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L +C +CD + Y L DL + +E + + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLRDLDADVAWAQGREVKTIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130 GG P L + P +Q L EI +E N GT+E + ID+ Sbjct: 66 GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVETDRFIDY 113 >gi|61229947|sp|O33506|PQQE_RAHAQ RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E Length = 377 Score = 35.0 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 17/99 (17%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 C + + L DF + Q + EE G + + Sbjct: 22 CPVQCPYWSNPL---------DFAKQEKE----LTTAQWIKVFEEAREMGAVQ---IGFS 65 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGID 129 GGEPL++ D+P LI+ GF + T+G + ID Sbjct: 66 GGEPLVRKDLPELIRGARDLGFYTNLITSGIGLTEKKID 104 >gi|323141977|ref|ZP_08076829.1| radical SAM domain protein [Phascolarctobacterium sp. YIT 12067] gi|322413546|gb|EFY04413.1| radical SAM domain protein [Phascolarctobacterium sp. YIT 12067] Length = 339 Score = 35.0 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 39/100 (39%), Gaps = 25/100 (25%) Query: 29 FSG-CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 +G CN CR+C + + + + ++ + + R+ Sbjct: 8 LTGQCNF-----------ACRYC---YAAEH--ERSMMSPETALAAVK---LAADGGERF 48 Query: 88 CV-LTGGEPLL--QVDVPLIQALNKRGFE--IAVETNGTI 122 + +GGEPLL ++ +++ + ++TNG++ Sbjct: 49 VIQFSGGEPLLNFDCLKAVVDYVHQEKPPAVLQLQTNGSL 88 >gi|312136266|ref|YP_004003603.1| wyosine base formation domain protein [Methanothermus fervidus DSM 2088] gi|311223985|gb|ADP76841.1| Wyosine base formation domain protein [Methanothermus fervidus DSM 2088] Length = 305 Score = 35.0 bits (80), Expect = 7.5, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Query: 93 GEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123 GEP L + LI+ +++ F + TNG + Sbjct: 136 GEPTLYPLIDELIEEFHRKNFTTFLVTNGLLP 167 >gi|119470551|ref|ZP_01613254.1| putative oxygen-independent coproporphyrinogen III oxidase [Alteromonadales bacterium TW-7] gi|119446252|gb|EAW27529.1| putative oxygen-independent coproporphyrinogen III oxidase [Alteromonadales bacterium TW-7] Length = 369 Score = 35.0 bits (80), Expect = 7.5, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 50/152 (32%), Gaps = 23/152 (15%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVD 100 +C +CD + G +G V L D ++ + + + + GG P L Sbjct: 5 WCVQKCPYCDFNSHGQKGDIPEAEYVQHLIDDLKADLHLVQGRKIHSIFIGGGTPSLLTG 64 Query: 101 VPLIQALNK--------RGFEIAVETN-GTIE-------PPQGIDWICV------SPKAG 138 + L++ EI +E N GT+E GI+ I + S K Sbjct: 65 DAYTRLLSEVDSLIGLTDNCEITLEANPGTVETGRFKEYVKAGINRISIGIQSLQSDKLK 124 Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170 +I G E Q + N D Sbjct: 125 ALGRIHGANEATYAAEQAKEAGLNSFNLDLMH 156 >gi|260893119|ref|YP_003239216.1| Radical SAM domain protein [Ammonifex degensii KC4] gi|260865260|gb|ACX52366.1| Radical SAM domain protein [Ammonifex degensii KC4] Length = 330 Score = 35.0 bits (80), Expect = 7.6, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C + K + LIEE G + + + Sbjct: 11 CNLKC--------EHC------YRDAGTKKEAELVTSEGKALIEEIARAG---FKIMIFS 53 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 GGEP+L+ D+ LI G + TNGT+ Sbjct: 54 GGEPILRPDLYSLIAHARSLGLRPVLGTNGTL 85 >gi|253702721|ref|YP_003023910.1| radical SAM protein [Geobacter sp. M21] gi|251777571|gb|ACT20152.1| Radical SAM domain protein [Geobacter sp. M21] Length = 430 Score = 35.0 bits (80), Expect = 7.6, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 17/101 (16%) Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89 CN+ C C F G G G + + LI + + + Sbjct: 61 QNCNMACCY--------CWNCGGTF-GKPGHLMGEKSAQRAVKLILDLVQESNADKIFIN 111 Query: 90 LTGGEPLLQ------VDVPLIQ--ALNKRGFEIAVETNGTI 122 GGEPLL + + L+Q A + F + ++TNGT+ Sbjct: 112 FYGGEPLLDFPILTKITLELLQHEARLAKNFYLTLDTNGTL 152 >gi|88854900|ref|ZP_01129566.1| N-acyl-L-amino acid amidohydrolase [marine actinobacterium PHSC20C1] gi|88816061|gb|EAR25917.1| N-acyl-L-amino acid amidohydrolase [marine actinobacterium PHSC20C1] Length = 394 Score = 35.0 bits (80), Expect = 7.6, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 4/60 (6%) Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ----ALNKRGFEI 114 T R + + + +T GEP+L D L+ AL+ +G ++ Sbjct: 265 STSEDRLTIARELERTVRLVAEANYCTGTVEITQGEPVLSNDPELVGLVDPALHAQGLDV 324 >gi|75760857|ref|ZP_00740872.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228967829|ref|ZP_04128843.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar sotto str. T04001] gi|74491671|gb|EAO54872.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228791879|gb|EEM39467.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar sotto str. T04001] Length = 339 Score = 35.0 bits (80), Expect = 7.6, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L + G ++ R +TG Sbjct: 24 DRCNFRCTYCMPAEIFGPD--YAFLKDEF--LLTFDEIERLAKLFVNIGVRKIR---ITG 76 Query: 93 GEPLLQVDV-PLIQALNKRG--FEIAVETN 119 GEPLL+ D+ LI L K +I + TN Sbjct: 77 GEPLLRKDLTKLIARLVKIDGLIDIGLTTN 106 >gi|325849615|ref|ZP_08170853.1| radical SAM domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480096|gb|EGC83173.1| radical SAM domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 442 Score = 35.0 bits (80), Expect = 7.6, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 14/103 (13%) Query: 32 CNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGR 86 CN+ D +A +C+ C G N+ +Q+ D+I + G Sbjct: 104 CNIPWTILLDPTTACNLKCKGC------WAAEYGNSLNLSYEQIDDIISQGKELGIYFY- 156 Query: 87 YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGID 129 + TGGEPL++ L E + TN T+ + ID Sbjct: 157 --IFTGGEPLVRKKDILKICEKHNDCEFLIFTNSTLIDEEFID 197 >gi|258620087|ref|ZP_05715126.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258587445|gb|EEW12155.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 395 Score = 35.0 bits (80), Expect = 7.6, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 12/91 (13%) Query: 42 RLSAQCRFCD--TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-- 97 + + C +C D L LI+ +I EK+ Y GGEP L Sbjct: 11 KCNINCEYCYYLEKETFFHHKDKTCITYDTLEQLIKS-YINQEKDDIYFTWQGGEPTLSG 69 Query: 98 ----QVDVPLIQALNKRGFEIA--VETNGTI 122 + + L QA RG I ++TNGT+ Sbjct: 70 IEFFEKVIELQQAF-SRGKRIHNAIQTNGTL 99 >gi|257094383|ref|YP_003168024.1| molybdenum cofactor biosynthesis protein A [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046907|gb|ACV36095.1| molybdenum cofactor biosynthesis protein A [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 359 Score = 35.0 bits (80), Expect = 7.6, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 15/98 (15%) Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 R S DR +C +C + + T R V L + + + Sbjct: 45 IRLS--------ITDRCDFRCSYC----MAEEMTFLPRAQVLTLEECLRIAGTFVDLGVT 92 Query: 87 YCVLTGGEPLL-QVDVPLIQALNKRG--FEIAVETNGT 121 +TGGEPL+ + L++ + E+ + TNG+ Sbjct: 93 KVRVTGGEPLVRHNAIWLLERIAGLSGLKELVITTNGS 130 >gi|170290638|ref|YP_001737454.1| radical SAM domain-containing protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170174718|gb|ACB07771.1| Radical SAM domain protein [Candidatus Korarchaeum cryptofilum OPF8] Length = 326 Score = 35.0 bits (80), Expect = 7.6, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 66 NVDQLADLIEEQWITGEKEGR-----YCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETN 119 + + +L E W K TGGEP L + V L+ K G + TN Sbjct: 26 SPRETEELSTEDWKRVLKIFHGLGVPQVTFTGGEPTLREDLVDLVSEAQKLGMVSGIVTN 85 Query: 120 GTI 122 GT+ Sbjct: 86 GTL 88 >gi|167755395|ref|ZP_02427522.1| hypothetical protein CLORAM_00909 [Clostridium ramosum DSM 1402] gi|167704334|gb|EDS18913.1| hypothetical protein CLORAM_00909 [Clostridium ramosum DSM 1402] Length = 299 Score = 35.0 bits (80), Expect = 7.6, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118 +G +D++ + E+ ++GGE + Q L+ L K +A+ET Sbjct: 103 EGEYKTIDEIVTTCLQDKDFYEESNGGITISGGEGMSQPAFLFHLVNELKKHQLHLAIET 162 Query: 119 NGTIE 123 G IE Sbjct: 163 TGYIE 167 >gi|145295336|ref|YP_001138157.1| molybdenum cofactor biosynthesis protein A [Corynebacterium glutamicum R] gi|166217248|sp|A4QDF8|MOAA_CORGB RecName: Full=Molybdenum cofactor biosynthesis protein A gi|140845256|dbj|BAF54255.1| hypothetical protein [Corynebacterium glutamicum R] Length = 377 Score = 35.0 bits (80), Expect = 7.6, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 17/91 (18%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE----EQWITGEKEGRYCVLTGGEPL 96 DR + +C +C + +Q + E + R TGGEPL Sbjct: 59 DRCNLRCTYC------MPAEGLEWLPTEQTLNDAEVLRLLHIAVVKLGIRQIRFTGGEPL 112 Query: 97 LQVDVPLI----QALN-KRGFEIAV--ETNG 120 L+ ++ I AL G ++ + TNG Sbjct: 113 LRKNLEDIIAGTAALRTDEGEKVHIALTTNG 143 >gi|50122553|ref|YP_051720.1| coproporphyrinogen III oxidase [Pectobacterium atrosepticum SCRI1043] gi|49613079|emb|CAG76530.1| putative oxygen-independent coproporphyrinogen III oxidase [Pectobacterium atrosepticum SCRI1043] Length = 379 Score = 35.0 bits (80), Expect = 7.6, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 12/103 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91 L +C +CD + ++G + VD L ++ + + + Sbjct: 6 PLSLYIHIPWCVQKCPYCDFNSHALKGDVPHQEYVDHLLADLDADLPLAGGRALHSIFIG 65 Query: 92 GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEP 124 GG P L + +QAL EI +E N GT+E Sbjct: 66 GGTPSL-LSAEAMQALLDGVRARIPLTPDAEITMEANPGTVEA 107 >gi|320161385|ref|YP_004174609.1| molybdenum cofactor biosynthesis protein A [Anaerolinea thermophila UNI-1] gi|319995238|dbj|BAJ64009.1| molybdenum cofactor biosynthesis protein A [Anaerolinea thermophila UNI-1] Length = 328 Score = 34.6 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 8/92 (8%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLT 91 N DR + +C +C + QG ++ + + +++E + E+ LT Sbjct: 11 NYLRISVTDRCNLRCVYC----MPPQGIPLTSHDAIMRYEEIVEVVRVAAEQGITDIRLT 66 Query: 92 GGEPLLQVDV-PLIQALNK-RGFE-IAVETNG 120 GGEPL ++ + L+ + G I++ TNG Sbjct: 67 GGEPLARLGITELVHMIAAVPGIRDISMTTNG 98 >gi|260425055|ref|ZP_05779112.1| radical SAM domain protein [Dialister invisus DSM 15470] gi|260404024|gb|EEW97571.1| radical SAM domain protein [Dialister invisus DSM 15470] Length = 276 Score = 34.6 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 14/68 (20%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 VF F+GCNL C +C ++ + +G +V++LA++ E G Sbjct: 26 TVF--FAGCNL-----------SCVYC-QNYEISELRRGIEISVERLAEIYRELIARGAH 71 Query: 84 EGRYCVLT 91 T Sbjct: 72 NIDLVTPT 79 >gi|258514538|ref|YP_003190760.1| Radical SAM domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257778243|gb|ACV62137.1| Radical SAM domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 330 Score = 34.6 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 7/77 (9%) Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105 C+ C + N + LI+E G + + +GGEPL++ D+ L++ Sbjct: 15 CKHC---YRDAGAAVEEELNTTEGKSLIDEIVKAG---FKIMIFSGGEPLMRPDIFELVE 68 Query: 106 ALNKRGFEIAVETNGTI 122 +G TNG++ Sbjct: 69 YAASQGLRPVFGTNGSL 85 >gi|302333902|gb|ADL24095.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus JKD6159] Length = 309 Score = 34.6 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 14/68 (20%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-------IQALNKRGF 112 K D++A + + G K+ R +TGGEPL++ D+ L I + G Sbjct: 14 PKNELLTFDEMARIAKVYAELGVKKIR---ITGGEPLMRRDLDLLIAKLNQIDGIEDIGL 70 Query: 113 EIAVETNG 120 TNG Sbjct: 71 T----TNG 74 >gi|326316277|ref|YP_004233949.1| radical SAM enzyme, Cfr family [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373113|gb|ADX45382.1| radical SAM enzyme, Cfr family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 373 Score = 34.6 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 14/101 (13%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLAD-LIEEQWITGEKEGRYCVLTG 92 Q + CRFC T G T G A+ + + T E+ V+ G Sbjct: 104 CISSQAGCAVGCRFCSTGHQGFSRNLTSGEIVAQLWFAEHALRARLGTQERVISNVVMMG 163 Query: 93 -GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123 GEPL Q L+ AL G+ + V T+G + Sbjct: 164 MGEPL-QNYTALVPALRTMLDDHGYGLSRRRLTVSTSGVVP 203 >gi|167623296|ref|YP_001673590.1| ribosomal RNA large subunit methyltransferase N [Shewanella halifaxensis HAW-EB4] gi|205829881|sp|B0TLI1|RLMN_SHEHH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|167353318|gb|ABZ75931.1| radical SAM enzyme, Cfr family [Shewanella halifaxensis HAW-EB4] Length = 373 Score = 34.6 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 20/109 (18%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL-------ADLIEEQWITGEKEGRYC 88 Q + +C FC T G V ++ AD I TGE+ Sbjct: 107 CVSSQVGCALECTFCSTAQQGFN----RNLTVAEIVGQIWRVADFIGFVKDTGERPITNV 162 Query: 89 VLTG-GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI 128 V+ G GEPLL + +P + L+ GF + + T+G + + Sbjct: 163 VMMGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL 211 >gi|157961130|ref|YP_001501164.1| ribosomal RNA large subunit methyltransferase N [Shewanella pealeana ATCC 700345] gi|205829883|sp|A8H242|RLMN_SHEPA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157846130|gb|ABV86629.1| radical SAM enzyme, Cfr family [Shewanella pealeana ATCC 700345] Length = 373 Score = 34.6 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 20/109 (18%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL-------ADLIEEQWITGEKEGRYC 88 Q + +C FC T G V ++ AD I TGE+ Sbjct: 107 CVSSQVGCALECTFCSTAQQGFN----RNLTVAEIVGQIWRVADFIGFVKDTGERPITNV 162 Query: 89 VLTG-GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI 128 V+ G GEPLL + +P + L+ GF + + T+G + + Sbjct: 163 VMMGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL 211 >gi|118475331|ref|YP_891425.1| molybdenum cofactor biosynthesis protein A [Campylobacter fetus subsp. fetus 82-40] gi|261886248|ref|ZP_06010287.1| molybdenum cofactor biosynthesis protein A [Campylobacter fetus subsp. venerealis str. Azul-94] gi|166217242|sp|A0RMJ2|MOAA_CAMFF RecName: Full=Molybdenum cofactor biosynthesis protein A gi|118414557|gb|ABK82977.1| molybdenum cofactor biosynthesis protein A [Campylobacter fetus subsp. fetus 82-40] Length = 322 Score = 34.6 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 10/85 (11%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 +R + +CR+C D F + +++ + I+ G K+ R LTGGEPL++ Sbjct: 19 ERCNFRCRYCMPDEPF--KDAGHSNVLSYEEMFEFIKICLDNGVKKIR---LTGGEPLVR 73 Query: 99 VDVP-LIQALN--KRGFEIAVETNG 120 V + +N K G ++A+ TNG Sbjct: 74 KGVENFVAMINGYKSGLDLAMTTNG 98 >gi|120610108|ref|YP_969786.1| radical SAM protein [Acidovorax citrulli AAC00-1] gi|205829658|sp|A1TM24|RLMN_ACIAC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|120588572|gb|ABM32012.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax citrulli AAC00-1] Length = 373 Score = 34.6 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 14/101 (13%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLAD-LIEEQWITGEKEGRYCVLTG 92 Q + CRFC T G T G A+ + + T E+ V+ G Sbjct: 104 CISSQAGCAVGCRFCSTGHQGFSRNLTSGEIVAQLWFAEHALRARLGTQERVISNVVMMG 163 Query: 93 -GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123 GEPL Q L+ AL G+ + V T+G + Sbjct: 164 MGEPL-QNYTALVPALRTMLDDHGYGLSRRRLTVSTSGVVP 203 >gi|258624888|ref|ZP_05719816.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258582886|gb|EEW07707.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 395 Score = 34.6 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 12/91 (13%) Query: 42 RLSAQCRFCD--TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-- 97 + + C +C D L LI+ +I EK+ Y GGEP L Sbjct: 11 KCNINCEYCYYLEKETFFHHKDKTCITYDTLEQLIKS-YINQEKDDIYFTWQGGEPTLSG 69 Query: 98 ----QVDVPLIQALNKRGFEIA--VETNGTI 122 + + L QA RG I ++TNGT+ Sbjct: 70 IEFFEKVIELQQAF-SRGKRIHNAIQTNGTL 99 >gi|296129692|ref|YP_003636942.1| carbamoyl-phosphate synthase, large subunit [Cellulomonas flavigena DSM 20109] gi|296021507|gb|ADG74743.1| carbamoyl-phosphate synthase, large subunit [Cellulomonas flavigena DSM 20109] Length = 1111 Score = 34.6 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 11/78 (14%) Query: 52 TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111 TD+ + + ++ E + G G L GG Q + L Q L+ G Sbjct: 603 TDYDTADRLYFEPLTFEDVLEVYEAEKAAGPVAGLIVTL-GG----QTPLSLAQRLSDAG 657 Query: 112 FEIAVETNGTIEPPQGID 129 I GT PP ID Sbjct: 658 LPIL----GT--PPAAID 669 >gi|168206415|ref|ZP_02632420.1| putative heme biosynthesis protein [Clostridium perfringens E str. JGS1987] gi|170662102|gb|EDT14785.1| putative heme biosynthesis protein [Clostridium perfringens E str. JGS1987] Length = 380 Score = 34.6 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 11/92 (11%) Query: 33 NLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 LW G + + + +C C KG Y++D + +++ E + + L+ Sbjct: 49 PLWVGFKITPICNMKCEHC------WADLKGKEYSLDNIKKALDKL---SEIQILHLTLS 99 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GGEP ++ D + ++ + + TNG++ Sbjct: 100 GGEPFIRNDWEEIFSYAKEKRMCLEIFTNGSL 131 >gi|157373408|ref|YP_001472008.1| putative pyruvate formate lyase activating enzyme [Shewanella sediminis HAW-EB3] gi|157315782|gb|ABV34880.1| conserved hypothetical pyruvate formate lyase activating enzyme [Shewanella sediminis HAW-EB3] Length = 298 Score = 34.6 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 45/144 (31%), Gaps = 49/144 (34%) Query: 22 RVAVFCRFSGCNLWSGREQD----------------------------------RLSAQC 47 R+ VF GCN + S C Sbjct: 29 RLVVF--LQGCNYNCKNCHNPHTIDMCDSCGDCIAHCPTQALSMESIDGKDAIRWNSDLC 86 Query: 48 RFCDTDFVGIQG---TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102 CDT K YNV Q+ ++I +Q ++GGE LQ+ + Sbjct: 87 SGCDTCLAVCPKQSTPKTQEYNVTQMLEMIRKQASFISG----ITISGGEATLQLHFIIA 142 Query: 103 LIQALNK----RGFEIAVETNGTI 122 L +A+ + +++NG++ Sbjct: 143 LFKAIKSSDDLQHLSCMLDSNGSL 166 >gi|152979335|ref|YP_001344964.1| molybdenum cofactor biosynthesis protein A [Actinobacillus succinogenes 130Z] gi|171704353|sp|A6VPY2|MOAA_ACTSZ RecName: Full=Molybdenum cofactor biosynthesis protein A gi|150841058|gb|ABR75029.1| molybdenum cofactor biosynthesis protein A [Actinobacillus succinogenes 130Z] Length = 336 Score = 34.6 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 8/84 (9%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 D + +C +C D + VD++ + G ++ R +TGGEP L+ D Sbjct: 30 DVCNFRCNYCLPDGYHPSHERDKFLTVDEIRRAVSAFAAMGAQKVR---ITGGEPTLRKD 86 Query: 101 ----VPLIQALNKRGFEIAVETNG 120 I AL+ +A+ TNG Sbjct: 87 FLQITENITALDGI-RHVALTTNG 109 >gi|212224951|ref|YP_002308187.1| hypothetical protein TON_1800 [Thermococcus onnurineus NA1] gi|212009908|gb|ACJ17290.1| hypothetical protein, conserved [Thermococcus onnurineus NA1] Length = 360 Score = 34.6 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 9/82 (10%) Query: 47 CRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--LQVDVPL 103 C +C + + V ++ D+IEE I + +TGG+PL L Sbjct: 39 CFYCPLSPWRREDVVYANERPVKRIDDIIEEAKIQEARGAG---VTGGDPLARLDRTAEY 95 Query: 104 IQALNK---RGFEIAVETNGTI 122 I+AL + F + + T G + Sbjct: 96 IRALKEQFGEKFHVHLYTTGAL 117 >gi|254422832|ref|ZP_05036550.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp. PCC 7335] gi|196190321|gb|EDX85285.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp. PCC 7335] Length = 334 Score = 34.6 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 14/88 (15%) Query: 41 DRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 DR + QC +C D + + + D++ L+ +I LTGGEP Sbjct: 19 DRCNFQCVYCMPEGVDLQYALKEHW----LSQDEILQLLRGVFIPLGFTRFR--LTGGEP 72 Query: 96 LLQVDV-PLIQALNKRGFE--IAVETNG 120 LL+ ++ L++A+ + +A+ TNG Sbjct: 73 LLRPEIVDLVRAITQLPQTEDLAITTNG 100 >gi|218233618|ref|YP_002369523.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus B4264] gi|218161575|gb|ACK61567.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus B4264] Length = 337 Score = 34.6 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L + G ++ R +TG Sbjct: 22 DRCNFRCTYCMPAEIFGPD--YAFLKDEF--LLTFDEIERLAKLFVNIGVRKIR---ITG 74 Query: 93 GEPLLQVDV-PLIQALNKRG--FEIAVETN 119 GEPLL+ D+ LI L K +I + TN Sbjct: 75 GEPLLRKDLTKLIARLVKIDGLIDIGLTTN 104 >gi|149635693|ref|XP_001506834.1| PREDICTED: similar to development and differentiation enhancing factor 2 [Ornithorhynchus anatinus] Length = 604 Score = 34.6 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 24/113 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C++C G+ T + ++ +++ + ++ LT Sbjct: 50 CNL-----------RCQYC-MPEEGVPLTP--KADLLTTPEILRLARLFVQEGVDKIRLT 95 Query: 92 GGEPLLQVD-VPLIQALNKRG--FEIAVETNG---TIEPP----QGIDWICVS 134 GGEPL++ D V ++ L + +AV TNG P G+D I VS Sbjct: 96 GGEPLIRPDVVDIVAQLRQLPGLKTLAVTTNGLNLARMLPRLQEAGLDAINVS 148 >gi|145591638|ref|YP_001153640.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM 13514] gi|145283406|gb|ABP50988.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 302 Score = 34.6 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 46/131 (35%), Gaps = 25/131 (19%) Query: 15 GE-GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73 GE G + +AVF + GC S C FC Q + Y Sbjct: 71 GEYGYYN--LAVF--YGGC-----------SLDCLFC-------QNWQHREYPSRPKLVS 108 Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN--KRGFEIAVETNGTIEPPQGIDWI 131 ++E GG+P Q L+ A ++G + ET+G + P + Sbjct: 109 VKELEEAMHNRVTCICFFGGDPAPQTIHALLVAKKATEKGVRVCWETSGQLAPHLLDKVV 168 Query: 132 CVSPKAGCDLK 142 +S K G +K Sbjct: 169 EMSLKTGGIVK 179 >gi|329121723|ref|ZP_08250340.1| pyruvate formate-lyase activating enzyme [Dialister micraerophilus DSM 19965] gi|327468193|gb|EGF13679.1| pyruvate formate-lyase activating enzyme [Dialister micraerophilus DSM 19965] Length = 305 Score = 34.6 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 14/68 (20%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 VF F+GCNL C +C ++ + KG +V++L ++ E G Sbjct: 57 TVF--FAGCNL-----------SCVYC-QNYEISELRKGKEISVERLKEIYHELIARGAH 102 Query: 84 EGRYCVLT 91 T Sbjct: 103 NIDLVTPT 110 >gi|298675055|ref|YP_003726805.1| molybdenum cofactor biosynthesis protein A [Methanohalobium evestigatum Z-7303] gi|298288043|gb|ADI74009.1| molybdenum cofactor biosynthesis protein A [Methanohalobium evestigatum Z-7303] Length = 308 Score = 34.6 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 24/110 (21%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C + +VD ++ ++ G + ++ + Sbjct: 32 CNL-----------NCIYC---HHEGNSSSKKEMSVDDISKIVHTASCYGVNKIKF---S 74 Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP-------QGIDWICVS 134 GGEPL++ D I EI+ TNG + G+D I +S Sbjct: 75 GGEPLVRDDFEQILQSLPPLKEISATTNGVLLKDRAHELKAAGLDRINIS 124 >gi|291546221|emb|CBL19329.1| Radical SAM superfamily [Ruminococcus sp. SR1/5] Length = 169 Score = 34.6 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 14/71 (19%) Query: 31 GCNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEG 85 GCN+ D SA C C G + N+ D++ D+I + G Sbjct: 103 GCNIPWAILLDPTSACNLHCTGC------WAAEYGNKLNLTYDEIDDIIRQGKELGVYMY 156 Query: 86 RYCVLTGGEPL 96 + TGGEPL Sbjct: 157 ---IYTGGEPL 164 >gi|20141181|sp|Q51741|CMO_PYRFU RecName: Full=Tungsten-containing aldehyde ferredoxin oxidoreductase cofactor-modifying protein Length = 356 Score = 34.6 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 18/93 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C F + G + D ++++ E + Sbjct: 12 CNL-----------RCEMC---FKQHWEDEEGDMDYDLFLKILDDA--EKFPELKMIYFG 55 Query: 92 G-GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 G GEP + + +++ + KRGF + + TNGT+ Sbjct: 56 GIGEPTVHPRFMDMVREVKKRGFALGISTNGTL 88 >gi|86145592|ref|ZP_01063922.1| hypothetical protein MED222_01522 [Vibrio sp. MED222] gi|218708638|ref|YP_002416259.1| hypothetical protein VS_0616 [Vibrio splendidus LGP32] gi|254807223|sp|B7VJT5|RLMN_VIBSL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|85836563|gb|EAQ54689.1| hypothetical protein MED222_01522 [Vibrio sp. MED222] gi|218321657|emb|CAV17609.1| Predicted Fe-S-cluster redox enzyme [Vibrio splendidus LGP32] Length = 380 Score = 34.6 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 19/111 (17%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI---TGEKEGRYCVLTG 92 Q + +C+FC T G V Q+ E + TG + V+ G Sbjct: 107 CVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIGLEKETGRRPITNVVMMG 166 Query: 93 -GEPLLQ-----VDVPLIQALNKRGF-----EIAVETNGTIEPPQGIDWIC 132 GEPLL + L+ L+ GF + V T+G G+D + Sbjct: 167 MGEPLLNMKNLIPSLELM--LDDLGFSLSKRRVTVSTSG---VVSGLDQMT 212 >gi|84387623|ref|ZP_00990640.1| hypothetical protein V12B01_09136 [Vibrio splendidus 12B01] gi|84377468|gb|EAP94334.1| hypothetical protein V12B01_09136 [Vibrio splendidus 12B01] Length = 380 Score = 34.6 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 19/111 (17%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI---TGEKEGRYCVLTG 92 Q + +C+FC T G V Q+ E + TG + V+ G Sbjct: 107 CVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIGLEKDTGRRPITNVVMMG 166 Query: 93 -GEPLLQ-----VDVPLIQALNKRGF-----EIAVETNGTIEPPQGIDWIC 132 GEPLL + L+ L+ GF + V T+G G+D + Sbjct: 167 MGEPLLNMKNLIPSLELM--LDDLGFSLSKRRVTVSTSG---VVSGLDQMT 212 >gi|51893473|ref|YP_076164.1| Fe-S oxidoreductase [Symbiobacterium thermophilum IAM 14863] gi|51857162|dbj|BAD41320.1| Fe-S oxidoreductase [Symbiobacterium thermophilum IAM 14863] Length = 424 Score = 34.6 bits (79), Expect = 8.0, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 18/94 (19%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 + CNL +C C + G +++ + + E GE + Sbjct: 83 TAKCNL-----------RCIGC---WAG-DYELRPELSLETMDRICRE---GGELGIHFY 124 Query: 89 VLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122 V++GGEP+++ + L A + +NGT+ Sbjct: 125 VISGGEPMVRQNDLLELARRHPDKMFHIYSNGTL 158 >gi|66045564|ref|YP_235405.1| molybdenum cofactor biosynthesis protein A [Pseudomonas syringae pv. syringae B728a] gi|302187325|ref|ZP_07263998.1| molybdenum cofactor biosynthesis protein A [Pseudomonas syringae pv. syringae 642] gi|75502205|sp|Q4ZU05|MOAA_PSEU2 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|63256271|gb|AAY37367.1| Radical SAM:Molybdenum cofactor synthesis C [Pseudomonas syringae pv. syringae B728a] gi|330900547|gb|EGH31966.1| molybdenum cofactor biosynthesis protein A [Pseudomonas syringae pv. japonica str. M301072PT] gi|330974255|gb|EGH74321.1| molybdenum cofactor biosynthesis protein A [Pseudomonas syringae pv. aceris str. M302273PT] gi|330979625|gb|EGH78144.1| molybdenum cofactor biosynthesis protein A [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 332 Score = 34.6 bits (79), Expect = 8.1, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C + + T R + L ++++ R LTGGEPL++ Sbjct: 23 DRCDFRCVYC----MAEEMTFLPRQQILSLEEILQVAERFVALGTRKIRLTGGEPLVRAG 78 Query: 101 VP-LIQALNKR-GF-EIAVETNGT 121 V L + + G E+ + TNG+ Sbjct: 79 VVGLCEKIAALPGLRELCMTTNGS 102 >gi|291549884|emb|CBL26146.1| GTP cyclohydrolase subunit MoaA [Ruminococcus torques L2-14] Length = 329 Score = 34.6 bits (79), Expect = 8.1, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 26/172 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA--DLIEEQ-WITGEKEGRYCVLTGGEPLL 97 DR + +C +C + + +Q+ D IE I+ E LTGGEPL+ Sbjct: 18 DRCNLRCVYC------MPEEGIEQLPHEQILTFDEIERVCRISTELGISKIKLTGGEPLV 71 Query: 98 QVDVP-LIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS---PKAGCDLKIK 144 + +P L+ + + G E + + TNG + QG+D + +S C + Sbjct: 72 RKGLPDLLGKIKRIPGIEQVTLTTNGILLKNQLDELMRQGLDAVNISIDTLDETCYHTVT 131 Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196 EL + V+ E Y + + PM+ EE +A Y ++P Sbjct: 132 RCGELNQALEGLQVALE-YPNLRVKLNCV-PMNQSE-EEYIQMA-EYAKEHP 179 >gi|282600947|ref|ZP_05980240.2| radical SAM enzyme, Cfr family [Subdoligranulum variabile DSM 15176] gi|282570117|gb|EFB75652.1| radical SAM enzyme, Cfr family [Subdoligranulum variabile DSM 15176] Length = 345 Score = 34.6 bits (79), Expect = 8.1, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 6/77 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N Q + CRFC Q + ++A I + + VL G Sbjct: 102 NTVCVSTQVGCAMGCRFC----ASTQAGRVRDLTAGEIAAEIYTAQKDSGERVSHIVLMG 157 Query: 93 -GEPLLQVDVPLIQALN 108 GEPL ++ L Sbjct: 158 IGEPL-HNFDNVMDFLE 173 >gi|223935844|ref|ZP_03627759.1| Radical SAM domain protein [bacterium Ellin514] gi|223895445|gb|EEF61891.1| Radical SAM domain protein [bacterium Ellin514] Length = 508 Score = 34.6 bits (79), Expect = 8.1, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 10/78 (12%) Query: 31 GCNLWSGREQDRLSAQCR-------FCDT--DFVGIQGTKGGRYNVDQLADLIEEQWITG 81 GC G QD C CD ++ + D+ ++ + Sbjct: 89 GCPSDCGLCQDHQQHTCSPIIEINDVCDLTCPVCIVRNQQRYAMTFDEFKAAVDA-IVAA 147 Query: 82 EKEGRYCVLTGGEPLLQV 99 E E +L+GGEP L Sbjct: 148 EGELPILLLSGGEPTLHK 165 >gi|218899882|ref|YP_002448293.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus G9842] gi|218545891|gb|ACK98285.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus G9842] Length = 337 Score = 34.6 bits (79), Expect = 8.1, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L + G ++ R +TG Sbjct: 22 DRCNFRCTYCMPAEIFGPD--YAFLKDEF--LLTFDEIERLAKLFVNIGVRKIR---ITG 74 Query: 93 GEPLLQVDV-PLIQALNKRG--FEIAVETN 119 GEPLL+ D+ LI L K +I + TN Sbjct: 75 GEPLLRKDLTKLIARLVKIDGLIDIGLTTN 104 >gi|18976716|ref|NP_578073.1| tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein [Pyrococcus furiosus DSM 3638] gi|18892298|gb|AAL80468.1| tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein [Pyrococcus furiosus DSM 3638] Length = 377 Score = 34.6 bits (79), Expect = 8.1, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 18/93 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C F + G + D ++++ E + Sbjct: 33 CNL-----------RCEMC---FKQHWEDEEGDMDYDLFLKILDDA--EKFPELKMIYFG 76 Query: 92 G-GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 G GEP + + +++ + KRGF + + TNGT+ Sbjct: 77 GIGEPTVHPRFMDMVREVKKRGFALGISTNGTL 109 >gi|25028918|ref|NP_738972.1| putative anaerobic ribonucleoside-triphosphate reductase activating protein [Corynebacterium efficiens YS-314] gi|259507982|ref|ZP_05750882.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Corynebacterium efficiens YS-314] gi|23494205|dbj|BAC19172.1| putative anaerobic ribonucleoside-triphosphate reductase activating protein [Corynebacterium efficiens YS-314] gi|259164477|gb|EEW49031.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Corynebacterium efficiens YS-314] Length = 195 Score = 34.6 bits (79), Expect = 8.1, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 33/106 (31%), Gaps = 28/106 (26%) Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69 F TL GEG L C C +G + Sbjct: 31 FQTLDGEG----------------LRCSLYVSYCPFNCLGCYNRAAQKKGYGMEYTT--E 72 Query: 70 LADLIEEQWITGEKEGRYC---VLTGGEPLLQV--DVPLIQALNKR 110 L D I G+ GR+ L GGEP L +PL++ + + Sbjct: 73 LEDRI-----LGDLAGRHVAGLTLVGGEPFLSARYLLPLVRRIRRE 113 >gi|15668800|ref|NP_247603.1| hypothetical protein MJ_0619 [Methanocaldococcus jannaschii DSM 2661] gi|2496079|sp|Q58036|Y619_METJA RecName: Full=Uncharacterized protein MJ0619 gi|1591330|gb|AAB98614.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 506 Score = 34.6 bits (79), Expect = 8.1, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 19/106 (17%) Query: 31 GCNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 GC G +R + C C F + + + E Sbjct: 72 GCPYDCGLCPNHKSTTILANIDVTNRCNLNCPIC---FANANKSGKVYEPSFEDIKRMME 128 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120 GGEP ++ D+P LI+ GF + + TNG Sbjct: 129 NLRKEIPPTPAIQFAGGEPTVRSDLPELIKLARDMGFLHVQLATNG 174 >gi|118578746|ref|YP_899996.1| molybdenum cofactor biosynthesis protein A [Pelobacter propionicus DSM 2379] gi|118501456|gb|ABK97938.1| GTP cyclohydrolase subunit MoaA [Pelobacter propionicus DSM 2379] Length = 326 Score = 34.6 bits (79), Expect = 8.1, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 18/181 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N DR + +C +C + + ++L + E G ++ R +TG Sbjct: 12 NYLRLSITDRCNMRCFYCMPSVGVVDKGHKSVLSYEELLLIAETAVKLGIEKIR---ITG 68 Query: 93 GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVSPKAGCDL- 141 GEPL+++ V ++ L G + +AV TNG + D + VS + Sbjct: 69 GEPLVRIGVVGFLERLAAIPGLQHLAVTTNGLLLEEMASDLYRAGVQRLNVSLDSLNPET 128 Query: 142 --KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199 KI G +LK V ++ + GF + ++ M G E + A + R Sbjct: 129 FGKITRGGDLKKVLAGLDAA--ERAGFPPPKINVVTMRGVNDGEILDFAALTLTRGNPVR 186 Query: 200 L 200 Sbjct: 187 F 187 >gi|307947383|ref|ZP_07662717.1| mannose-6-phosphate isomerase [Roseibium sp. TrichSKD4] gi|307769525|gb|EFO28752.1| mannose-6-phosphate isomerase [Roseibium sp. TrichSKD4] Length = 123 Score = 34.6 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 13/29 (44%) Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHK 206 +E N A+ P RLS+Q HK Sbjct: 19 WKVVEANERYAVKTISVKPGQRLSLQLHK 47 >gi|289192507|ref|YP_003458448.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22] gi|288938957|gb|ADC69712.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22] Length = 519 Score = 34.6 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 32/106 (30%), Gaps = 19/106 (17%) Query: 31 GCNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 GC G +R + C C F + + + E Sbjct: 86 GCPYDCGLCPNHKSTTILANIDVTNRCNLNCPIC---FANANKSGKVYEPSFEDIKRMME 142 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120 GGEP ++ D+P LI+ GF + V TNG Sbjct: 143 NLRKEIPPTPAIQFAGGEPTVRSDLPELIKLARDMGFLHVQVATNG 188 >gi|21232371|ref|NP_638288.1| pyrroloquinoline quinone biosynthesis protein PqqE [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767497|ref|YP_242259.1| pyrroloquinoline quinone biosynthesis protein PqqE [Xanthomonas campestris pv. campestris str. 8004] gi|32363345|sp|Q8P6M7|PQQE_XANCP RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|81306523|sp|Q4UXI4|PQQE_XANC8 RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|21114146|gb|AAM42212.1| PqqE protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572829|gb|AAY48239.1| PqqE protein [Xanthomonas campestris pv. campestris str. 8004] Length = 376 Score = 34.6 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 6/80 (7%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R C +C + L+E+ G + + +GGEP+L+ D+ Sbjct: 17 RCPLACPYCSNPIAL--AALREEMDTAGWRSLLEQAAEMGVLQAHF---SGGEPMLRKDL 71 Query: 102 P-LIQALNKRGFEIAVETNG 120 P L+ G + T+G Sbjct: 72 PELVAHARALGLYSNLITSG 91 >gi|294629289|ref|ZP_06707849.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces sp. e14] gi|292832622|gb|EFF90971.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces sp. e14] Length = 413 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 10/87 (11%) Query: 33 NLWSGREQDRLSAQCRFCD------TDFVGIQGTKGGRYN-VDQLADLIEEQWIT---GE 82 L + +C +CD T+ G G R N D LAD + Sbjct: 32 PLGFYLHVPYCATRCGYCDFNTYTATELRGTGGVLASRDNYADTLADEVRLARKVLGDDP 91 Query: 83 KEGRYCVLTGGEPLLQVDVPLIQALNK 109 +E R + GG P L L++ L+ Sbjct: 92 REVRTVFVGGGTPTLLAAADLVRMLHA 118 >gi|289673534|ref|ZP_06494424.1| molybdenum cofactor biosynthesis protein A [Pseudomonas syringae pv. syringae FF5] Length = 310 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C + + T R + L ++++ R LTGGEPL++ Sbjct: 23 DRCDFRCVYC----MAEEMTFLPRQQILSLEEILQVAERFVALGTRKIRLTGGEPLVRAG 78 Query: 101 VP-LIQALNKR-GF-EIAVETNGT 121 V L + + G E+ + TNG+ Sbjct: 79 VVGLCEKIAALPGLRELCMTTNGS 102 >gi|288559595|ref|YP_003423081.1| molybdopterin cofactor biosynthesis protein A MobA1 [Methanobrevibacter ruminantium M1] gi|288542305|gb|ADC46189.1| molybdopterin cofactor biosynthesis protein A MobA1 [Methanobrevibacter ruminantium M1] Length = 311 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 15/103 (14%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 +R + C +C D++ ++ G ++ R L+GGEPL++ D Sbjct: 22 NRCNVNCIYC---HHDGMLDSSSEMTPDEIYEICRIAKKLGVEKIR---LSGGEPLVRPD 75 Query: 101 V-PLIQALNKRGFE-IAVETNGTI-------EPPQGIDWICVS 134 + +++ +N F I++ +NG G+D I VS Sbjct: 76 IVEIVEKVNSLDFRDISITSNGIFLDKLAGPLKDAGLDRINVS 118 >gi|283458054|ref|YP_003362665.1| coproporphyrinogen III oxidase [Rothia mucilaginosa DY-18] gi|283134080|dbj|BAI64845.1| coproporphyrinogen III oxidase [Rothia mucilaginosa DY-18] Length = 428 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 20/110 (18%) Query: 30 SGC---NLWSGREQDRLSAQCRFCDTD-FVGIQGTKG---GRYNVDQLADLI-----EEQ 77 +GC + S +C +CD + + G G Y D +A+++ E Sbjct: 22 AGCETRDFSLYVHIPFCSVRCGYCDFNTYATEDFGNGIGLGTYADDAIAEILFAARTLET 81 Query: 78 WITGEKEGRYCVLTGGEPLLQVDVPLIQALNK--------RGFEIAVETN 119 ++ R GG P L++ L G E+ E N Sbjct: 82 SGVAKRPMRTVFFGGGTPTKLPARDLVRILQAAIDVFGLVEGAEVTTEAN 131 >gi|255012918|ref|ZP_05285044.1| putative Fe-S oxidoreductase [Bacteroides sp. 2_1_7] Length = 391 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 11/93 (11%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R +A+C C + K D++ + E ++GGEP L+ D+ Sbjct: 17 RCNAKCAMC--FYAQEMDKKQPDLTFDEIKKISETAGQFNRLW-----ISGGEPTLREDL 69 Query: 102 PLIQALNKRG---FEIAVETNGTIEPPQGIDWI 131 P I L + ++ + TNG ++P + ++W+ Sbjct: 70 PEILELFYKNNHIKDVNIPTNG-LKPDRIVEWV 101 >gi|228987980|ref|ZP_04148086.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771784|gb|EEM20244.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 339 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L + G ++ R LTG Sbjct: 24 DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKLFVSIGVRKIR---LTG 76 Query: 93 GEPLLQVDV-PLIQALNKRG--FEIAVETN 119 GEPLL+ D+ LI L K +I + TN Sbjct: 77 GEPLLRKDLTKLIARLVKIDGLLDIGLTTN 106 >gi|222098198|ref|YP_002532255.1| molybdenum cofactor biosynthesis protein a [Bacillus cereus Q1] gi|221242256|gb|ACM14966.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus Q1] Length = 334 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L + G ++ R LTG Sbjct: 19 DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKLFVSIGVRKIR---LTG 71 Query: 93 GEPLLQVDV-PLIQALNKRG--FEIAVETN 119 GEPLL+ D+ LI L K +I + TN Sbjct: 72 GEPLLRKDLTKLIARLVKIDGLLDIGLTTN 101 >gi|206977358|ref|ZP_03238255.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus H3081.97] gi|217962214|ref|YP_002340784.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH187] gi|206744509|gb|EDZ55919.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus H3081.97] gi|217067222|gb|ACJ81472.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH187] Length = 337 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L + G ++ R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKLFVSIGVRKIR---LTG 74 Query: 93 GEPLLQVDV-PLIQALNKRG--FEIAVETN 119 GEPLL+ D+ LI L K +I + TN Sbjct: 75 GEPLLRKDLTKLIARLVKIDGLLDIGLTTN 104 >gi|736276|emb|CAA56172.1| cofactor modifying protein [Pyrococcus furiosus DSM 3638] Length = 357 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 15/92 (16%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C F + G + D ++ + + Sbjct: 12 CNL-----------RCEMC---FKQHWEDEEGDMDYDLFLKILRRCREVSRAKDDILRRS 57 Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GEP + + +++ + KRGF + + TNGT+ Sbjct: 58 IGEPTVHPRFMDMVREVKKRGFALGISTNGTL 89 >gi|62390085|ref|YP_225487.1| molybdenum cofactor biosynthesis protein A [Corynebacterium glutamicum ATCC 13032] gi|41325421|emb|CAF19901.1| MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A [Corynebacterium glutamicum ATCC 13032] Length = 402 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 17/91 (18%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG----EKEGRYCVLTGGEPL 96 DR + +C +C + +Q + E + + R TGGEPL Sbjct: 84 DRCNLRCTYC------MPAEGLEWLPTEQTLNDAEVLRLIRIAVVKLGIRQIRFTGGEPL 137 Query: 97 LQVDVPLI----QALN-KRGFEIAV--ETNG 120 L+ ++ I AL G ++ + TNG Sbjct: 138 LRKNLEDIIAGTAALRTDEGEKVHIALTTNG 168 >gi|23308834|ref|NP_600423.2| molybdenum cofactor biosynthesis protein A [Corynebacterium glutamicum ATCC 13032] gi|24211974|sp|Q8NR60|MOAA_CORGL RecName: Full=Molybdenum cofactor biosynthesis protein A gi|21323964|dbj|BAB98590.1| Molybdenum cofactor biosynthesis enzyme [Corynebacterium glutamicum ATCC 13032] Length = 377 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 17/91 (18%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG----EKEGRYCVLTGGEPL 96 DR + +C +C + +Q + E + + R TGGEPL Sbjct: 59 DRCNLRCTYC------MPAEGLEWLPTEQTLNDAEVLRLIRIAVVKLGIRQIRFTGGEPL 112 Query: 97 LQVDVPLI----QALN-KRGFEIAV--ETNG 120 L+ ++ I AL G ++ + TNG Sbjct: 113 LRKNLEDIIAGTAALRTDEGEKVHIALTTNG 143 >gi|47565151|ref|ZP_00236194.1| molybdopterin cofactor biosynthesis protein A [Bacillus cereus G9241] gi|47557937|gb|EAL16262.1| molybdopterin cofactor biosynthesis protein A [Bacillus cereus G9241] Length = 337 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L + G ++ R LTG Sbjct: 22 DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKLFVSIGVRKIR---LTG 74 Query: 93 GEPLLQVDV-PLIQALNKRG--FEIAVETN 119 GEPLL+ D+ LI L K +I + TN Sbjct: 75 GEPLLRKDLTKLIARLVKIDGLLDIGLTTN 104 >gi|251781169|ref|ZP_04824089.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085484|gb|EES51374.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 326 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 8/84 (9%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C++C + G + +++ + ++I + R +TGGEPL++ Sbjct: 18 DRCNLRCKYC----MPKDGVEYLQHDEILTFDEIITICKSMVKLGIRNIKITGGEPLVRK 73 Query: 100 DV-PLIQALNK-RGFE-IAVETNG 120 D+ LI+ + +G E + + +NG Sbjct: 74 DIVNLIKDIKSIKGIENVTLTSNG 97 >gi|218781692|ref|YP_002433010.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01] gi|218763076|gb|ACL05542.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01] Length = 373 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 16/70 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL CR +G G + +L++ E +LT Sbjct: 40 CNLSC--------VHCR-----AAAEKGPYPGELDTQACFNLLD---GIAEVGQPIVILT 83 Query: 92 GGEPLLQVDV 101 GGEPLL+ D+ Sbjct: 84 GGEPLLRPDI 93 >gi|170743835|ref|YP_001772490.1| pyrroloquinoline quinone biosynthesis protein PqqE [Methylobacterium sp. 4-46] gi|226704995|sp|B0UE13|PQQE_METS4 RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|168198109|gb|ACA20056.1| coenzyme PQQ biosynthesis protein E [Methylobacterium sp. 4-46] Length = 379 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 6/89 (6%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVD 100 R +C +C + + + ++ E G + L+GGEP Q Sbjct: 21 RCPLRCPYCSNPLELDK--RSAELDTATWQRVLGEAAALG---VLHVHLSGGEPTARQDI 75 Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGID 129 V + A G + T+G +D Sbjct: 76 VEITGACADLGLYSNLITSGVGGALAKLD 104 >gi|117619957|ref|YP_856292.1| hypothetical protein AHA_1756 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|205829708|sp|A0KJ41|RLMN_AERHH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|117561364|gb|ABK38312.1| radical SAM enzyme, Cfr family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 367 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 29/173 (16%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW-----ITGEKEGRYCVL 90 Q + +C+FC T G +++++I + W + G++ V+ Sbjct: 106 CVSSQVGCALECKFCSTAQQGFN-------RNLKVSEIIGQVWRAAKIVGGKRPITNVVM 158 Query: 91 TG-GEPLLQVD--VPLIQALNKR-GF-----EIAVETNGTIEPPQGI-DWICVSPKAGCD 140 G GEPLL + VP ++ + G+ + + T+G + + D I V+ Sbjct: 159 MGMGEPLLNLANVVPAMRLMMDDFGYGISKRRVTISTSGVVPALDMLGDQIDVA--LAIS 216 Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193 L +L+ +N R L G + + Y Sbjct: 217 LHAPN-DKLRSEIMPINDKYNIEEFLAGVRRYL----GKSNANGGRVTVEYVL 264 >gi|188588003|ref|YP_001920495.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum E3 str. Alaska E43] gi|188498284|gb|ACD51420.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum E3 str. Alaska E43] Length = 326 Score = 34.6 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 8/84 (9%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C++C + G + +++ + ++I + R +TGGEPL++ Sbjct: 18 DRCNLRCKYC----MPKDGVEYLQHDEILTFDEIITICKSMVKLGIRNIKITGGEPLVRK 73 Query: 100 DV-PLIQALNK-RGFE-IAVETNG 120 D+ LI+ + +G E + + +NG Sbjct: 74 DIVNLIKDIKSIKGIENVTLTSNG 97 >gi|220926474|ref|YP_002501776.1| molybdenum cofactor biosynthesis protein A [Methylobacterium nodulans ORS 2060] gi|219951081|gb|ACL61473.1| molybdenum cofactor biosynthesis protein A [Methylobacterium nodulans ORS 2060] Length = 346 Score = 34.6 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 10/87 (11%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C + T + ++ L +L + R +TGGEPL++ D Sbjct: 36 DRCDLRCVYC----MAEDMTFLPKRDLLTLEELDRVCSVFVAHGVRKLRITGGEPLVRRD 91 Query: 101 VPLIQALNKRGF------EIAVETNGT 121 + + R E+ + TNGT Sbjct: 92 IMHLFRGLSRHLASGALDELTLTTNGT 118 >gi|229198890|ref|ZP_04325581.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1293] gi|228584593|gb|EEK42720.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1293] Length = 339 Score = 34.6 bits (79), Expect = 8.5, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L + G ++ R LTG Sbjct: 24 DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKLFVSIGVRKIR---LTG 76 Query: 93 GEPLLQVDV-PLIQALNKRG--FEIAVETN 119 GEPLL+ D+ LI L K +I + TN Sbjct: 77 GEPLLRKDLTKLIARLVKIDGLLDIGLTTN 106 >gi|170289703|ref|YP_001736519.1| radical SAM domain-containing protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170173783|gb|ACB06836.1| Radical SAM domain protein [Candidatus Korarchaeum cryptofilum OPF8] Length = 354 Score = 34.6 bits (79), Expect = 8.5, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 16/73 (21%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 +F FSGCN +C +C + G + ++LA L+++ G + Sbjct: 139 TIF--FSGCNF-----------KCIYCQNWDISQFPESGRVVSPEKLAALMDDLRRRGVR 185 Query: 84 EGRYCVLTGGEPL 96 GGEP Sbjct: 186 NINLV---GGEPT 195 >gi|323439161|gb|EGA96889.1| hypothetical protein SAO11_1999 [Staphylococcus aureus O11] gi|323441555|gb|EGA99205.1| hypothetical protein SAO46_2488 [Staphylococcus aureus O46] Length = 340 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 12/91 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q ++D + ++E R +TGGEP+ Sbjct: 2 RCSHCAVGYT-LQTVDPEPLDMDLIYRRLDEI-----PNLRTMSITGGEPMFSKKSIRNV 55 Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130 PL++ + RG + +N T+ + +D Sbjct: 56 VKPLLKYAHNRGIYTQMNSNLTLPQDRYLDI 86 >gi|302333542|gb|ADL23735.1| putative Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus JKD6159] Length = 383 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 12/91 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q ++D + ++E R +TGGEP+ Sbjct: 45 RCSHCAVGYT-LQTVDPEPLDMDLIYRRLDEI-----PNLRTMSITGGEPMFSKKSIRNV 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130 PL++ + RG + +N T+ + +D Sbjct: 99 VKPLLKYAHNRGIYTQMNSNLTLPQDRYLDI 129 >gi|298695215|gb|ADI98437.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ED133] Length = 381 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 12/91 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q ++D + ++E R +TGGEP+ Sbjct: 43 RCSHCAVGYT-LQTVDPEPLDMDLIYRRLDEI-----PNLRTMSITGGEPMFSKKSIRNV 96 Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130 PL++ + RG + +N T+ + +D Sbjct: 97 VKPLLKYAHNRGIYTQMNSNLTLPQDRYLDI 127 >gi|282917222|ref|ZP_06324977.1| hypothetical protein SATG_01796 [Staphylococcus aureus subsp. aureus D139] gi|283771026|ref|ZP_06343917.1| radical SAM superfamily domain-containing protein [Staphylococcus aureus subsp. aureus H19] gi|282318849|gb|EFB49204.1| hypothetical protein SATG_01796 [Staphylococcus aureus subsp. aureus D139] gi|283459620|gb|EFC06711.1| radical SAM superfamily domain-containing protein [Staphylococcus aureus subsp. aureus H19] Length = 381 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 12/91 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q ++D + ++E R +TGGEP+ Sbjct: 43 RCSHCAVGYT-LQTVDPEPLDMDLIYRRLDEI-----PNLRTMSITGGEPMFSKKSIRNV 96 Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130 PL++ + RG + +N T+ + +D Sbjct: 97 VKPLLKYAHNRGIYTQMNSNLTLPQDRYLDI 127 >gi|258422954|ref|ZP_05685853.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257846741|gb|EEV70756.1| conserved hypothetical protein [Staphylococcus aureus A9635] Length = 383 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 12/91 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q ++D + ++E R +TGGEP+ Sbjct: 45 RCSHCAVGYT-LQTVDPEPLDMDLIYRRLDEI-----PNLRTMSITGGEPMFSKKSIRNV 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130 PL++ + RG + +N T+ + +D Sbjct: 99 VKPLLKYAHNRGIYTQMNSNLTLPQDRYLDI 129 >gi|257451522|ref|ZP_05616821.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R] gi|317058099|ref|ZP_07922584.1| predicted protein [Fusobacterium sp. 3_1_5R] gi|313683775|gb|EFS20610.1| predicted protein [Fusobacterium sp. 3_1_5R] Length = 269 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 18/93 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + + + + + +E + Sbjct: 11 CNL-----------KCSYC---YQLKEHCNDKEMSYEIIDTFLERY--NKLEGSHTINFF 54 Query: 92 GGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 GGEPLL D ++ ++K +++ TNG++ Sbjct: 55 GGEPLLYADKIKYIMDRVDKDRTCLSISTNGSL 87 >gi|312437658|gb|ADQ76729.1| radical SAM superfamily domain protein [Staphylococcus aureus subsp. aureus TCH60] Length = 394 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 12/91 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q ++D + ++E R +TGGEP+ Sbjct: 56 RCSHCAVGYT-LQTVDPEPLDMDLIYRRLDEI-----PNLRTMSITGGEPMFSKKSIRNV 109 Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130 PL++ + RG + +N T+ + +D Sbjct: 110 VKPLLKYAHNRGIYTQMNSNLTLPQDRYLDI 140 >gi|282904508|ref|ZP_06312393.1| radical SAM superfamily domain protein [Staphylococcus aureus subsp. aureus C160] gi|282919711|ref|ZP_06327443.1| hypothetical protein SASG_02328 [Staphylococcus aureus subsp. aureus C427] gi|297590071|ref|ZP_06948711.1| radical SAM superfamily domain protein [Staphylococcus aureus subsp. aureus MN8] gi|282316349|gb|EFB46726.1| hypothetical protein SASG_02328 [Staphylococcus aureus subsp. aureus C427] gi|282595064|gb|EFC00031.1| radical SAM superfamily domain protein [Staphylococcus aureus subsp. aureus C160] gi|297577199|gb|EFH95913.1| radical SAM superfamily domain protein [Staphylococcus aureus subsp. aureus MN8] gi|315193403|gb|EFU23800.1| hypothetical protein CGSSa00_04716 [Staphylococcus aureus subsp. aureus CGS00] Length = 381 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 12/91 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q ++D + ++E R +TGGEP+ Sbjct: 43 RCSHCAVGYT-LQTVDPEPLDMDLIYRRLDEI-----PNLRTMSITGGEPMFSKKSIRNV 96 Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130 PL++ + RG + +N T+ + +D Sbjct: 97 VKPLLKYAHNRGIYTQMNSNLTLPQDRYLDI 127 >gi|192290582|ref|YP_001991187.1| molybdenum cofactor biosynthesis protein A [Rhodopseudomonas palustris TIE-1] gi|226707378|sp|B3QCQ7|MOAA_RHOPT RecName: Full=Molybdenum cofactor biosynthesis protein A gi|192284331|gb|ACF00712.1| molybdenum cofactor biosynthesis protein A [Rhodopseudomonas palustris TIE-1] Length = 344 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ + +++L L G ++ R LTGGEPL+ Sbjct: 33 DRCDFRCVYCMAEDMTFL----PRADLLTLEELDRLCSAFIAKGVRKLR---LTGGEPLV 85 Query: 98 QVD-VPLIQALNKRGF-----EIAVETNGT 121 + + + L+++L++ E+ + TNG+ Sbjct: 86 RRNMMSLVRSLSRHLKTGALDELTLTTNGS 115 >gi|319427159|gb|ADV55233.1| oxygen-independent coproporphyrinogen III oxidase [Shewanella putrefaciens 200] Length = 387 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 10/101 (9%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91 L +C +CD + G G VD L + + + + + + + Sbjct: 15 PLSLYIHIPWCVQKCPYCDFNSHGQNGELPQEAYVDALLEDLRQDLHLAQGRQVHTIFIG 74 Query: 92 GGEPLLQVDVPLIQALNKR--------GFEIAVETN-GTIE 123 GG P L + + L EI +E N GT+E Sbjct: 75 GGTPSLFDAKQIKRILEGANALIPFSDNIEITMEANPGTLE 115 >gi|49187615|ref|YP_030868.1| molybdenum cofactor biosynthesis protein A, N-terminus [Bacillus anthracis str. Sterne] gi|49181542|gb|AAT56918.1| molybdenum cofactor biosynthesis protein A, N-terminus [Bacillus anthracis str. Sterne] Length = 252 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ + + G ++ R LTG Sbjct: 35 DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 87 Query: 93 GEPLLQVDVP-LIQALNKRG--FEIAVETN 119 GEPLL+ D+ LI L K +I + TN Sbjct: 88 GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 117 >gi|82751530|ref|YP_417271.1| hypothetical protein SAB1809 [Staphylococcus aureus RF122] gi|82657061|emb|CAI81498.1| conserved hypothetical protein [Staphylococcus aureus RF122] Length = 383 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 12/91 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q ++D + ++E R +TGGEP+ Sbjct: 45 RCSHCAVGYT-LQTVDPEPLDMDLIYRRLDEI-----PNLRTMSITGGEPMFSKKSIRNV 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130 PL++ + RG + +N T+ + +D Sbjct: 99 VKPLLKYAHNRGIYTQMNSNLTLPQDRYLDI 129 >gi|49484118|ref|YP_041342.1| hypothetical protein SAR1967 [Staphylococcus aureus subsp. aureus MRSA252] gi|257426009|ref|ZP_05602431.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428682|ref|ZP_05605077.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431292|ref|ZP_05607668.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257434010|ref|ZP_05610361.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257436914|ref|ZP_05612956.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282906280|ref|ZP_06314132.1| radical SAM superfamily domain-containing protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282909196|ref|ZP_06317012.1| radical SAM superfamily domain-containing protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911502|ref|ZP_06319302.1| radical SAM superfamily domain-containing protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282914674|ref|ZP_06322459.1| radical SAM superfamily domain protein [Staphylococcus aureus subsp. aureus M899] gi|282925115|ref|ZP_06332775.1| hypothetical protein SARG_02404 [Staphylococcus aureus subsp. aureus C101] gi|283958638|ref|ZP_06376084.1| radical SAM superfamily domain-containing protein [Staphylococcus aureus subsp. aureus A017934/97] gi|293507751|ref|ZP_06667593.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 58-424] gi|293510769|ref|ZP_06669471.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|293539308|ref|ZP_06671987.1| radical SAM superfamily domain protein [Staphylococcus aureus subsp. aureus M1015] gi|295428458|ref|ZP_06821085.1| hypothetical protein SIAG_02227 [Staphylococcus aureus subsp. aureus EMRSA16] gi|49242247|emb|CAG40954.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257271152|gb|EEV03309.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257274326|gb|EEV05838.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257277941|gb|EEV08597.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257280936|gb|EEV11080.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257283703|gb|EEV13828.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282313073|gb|EFB43471.1| hypothetical protein SARG_02404 [Staphylococcus aureus subsp. aureus C101] gi|282321388|gb|EFB51714.1| radical SAM superfamily domain protein [Staphylococcus aureus subsp. aureus M899] gi|282324511|gb|EFB54823.1| radical SAM superfamily domain-containing protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282326764|gb|EFB57061.1| radical SAM superfamily domain-containing protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330477|gb|EFB59994.1| radical SAM superfamily domain-containing protein [Staphylococcus aureus subsp. aureus Btn1260] gi|283789678|gb|EFC28500.1| radical SAM superfamily domain-containing protein [Staphylococcus aureus subsp. aureus A017934/97] gi|290919843|gb|EFD96912.1| radical SAM superfamily domain protein [Staphylococcus aureus subsp. aureus M1015] gi|291094814|gb|EFE25082.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 58-424] gi|291466400|gb|EFF08924.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|295127440|gb|EFG57079.1| hypothetical protein SIAG_02227 [Staphylococcus aureus subsp. aureus EMRSA16] Length = 383 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 12/91 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +Q ++D + ++E R +TGGEP+ Sbjct: 45 RCSHCAVGYT-LQTVDPEPLDMDLIYRRLDEI-----PNLRTMSITGGEPMFSKKSIRNV 98 Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130 PL++ + RG + +N T+ + +D Sbjct: 99 VKPLLKYAHNRGIYTQMNSNLTLPQDRYLDI 129 >gi|39935047|ref|NP_947323.1| molybdenum cofactor biosynthesis protein A [Rhodopseudomonas palustris CGA009] gi|123773347|sp|Q3V7S1|MOAA_RHOPA RecName: Full=Molybdenum cofactor biosynthesis protein A gi|39648898|emb|CAE27419.1| molybdenum biosynthetic protein A [Rhodopseudomonas palustris CGA009] Length = 344 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 16/90 (17%) Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 DR +C +C D F+ + +++L L G ++ R LTGGEPL+ Sbjct: 33 DRCDFRCVYCMAEDMTFL----PRADLLTLEELDRLCSAFIAKGVRKLR---LTGGEPLV 85 Query: 98 QVD-VPLIQALNKRGF-----EIAVETNGT 121 + + + L+++L++ E+ + TNG+ Sbjct: 86 RRNMMSLVRSLSRHLKTGALDELTLTTNGS 115 >gi|170077975|ref|YP_001734613.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp. PCC 7002] gi|226707390|sp|B1XLR4|MOAA_SYNP2 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|169885644|gb|ACA99357.1| Molybdenum cofactor biosynthesis protein A [Synechococcus sp. PCC 7002] Length = 329 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 6/69 (8%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 DR + +C +C D + T + + ++ L+E+ +I LTGGEPLL+ Sbjct: 13 DRCNFRCHYCVPDEASLQYLLT-SEQLSNGEILTLLEQVFIPLGFRKFR--LTGGEPLLR 69 Query: 99 V-DVPLIQA 106 VPL++A Sbjct: 70 PQLVPLVRA 78 >gi|149917573|ref|ZP_01906070.1| Coenzyme PQQ synthesis protein E [Plesiocystis pacifica SIR-1] gi|149821636|gb|EDM81034.1| Coenzyme PQQ synthesis protein E [Plesiocystis pacifica SIR-1] Length = 311 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 19/82 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +C + + + + + E T Sbjct: 13 CNL-----------ACDYC----TITPAMRARALSPEAVVAAMREGRRLDYDR---VAFT 54 Query: 92 GGEPLLQVDVP-LIQALNKRGF 112 GGEP ++ D+ L++A K G+ Sbjct: 55 GGEPTIRRDLLGLVRASRKLGY 76 >gi|145351473|ref|XP_001420101.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580334|gb|ABO98394.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 336 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 5/71 (7%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGT-KGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 N ++ + +C +C G+ T K D++ +++ G + R LT Sbjct: 21 NYLRISLTEKCNLRCGYC-MPEDGVDLTAKDELLTADEIGRVVKIFAAAGVDKVR---LT 76 Query: 92 GGEPLLQVDVP 102 GGEP L+ D+ Sbjct: 77 GGEPTLRKDLE 87 >gi|21244125|ref|NP_643707.1| coproporphyrinogen III oxidase [Xanthomonas axonopodis pv. citri str. 306] gi|21109754|gb|AAM38243.1| oxidoreductase [Xanthomonas axonopodis pv. citri str. 306] Length = 385 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 31/99 (31%), Gaps = 10/99 (10%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91 L +C +CD + +G VD L ++ + V Sbjct: 8 PLSLYVHLPWCVRKCPYCDFNSHAAKGALPFEAYVDALIRDLDADLPLVWGRVVHSVFFG 67 Query: 92 GGEPLLQVDVPLIQALNKR--------GFEIAVETN-GT 121 GG P L + + L EI +ETN GT Sbjct: 68 GGTPSLFPPQAIDRFLQAAAARLRFAPNLEITLETNPGT 106 >gi|331000069|ref|ZP_08323764.1| molybdenum cofactor biosynthesis protein A [Parasutterella excrementihominis YIT 11859] gi|329572953|gb|EGG54573.1| molybdenum cofactor biosynthesis protein A [Parasutterella excrementihominis YIT 11859] Length = 313 Score = 34.6 bits (79), Expect = 8.7, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 7/62 (11%) Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK------RGFEIAVET 118 V ++I I LTGGEPLL+ + LI+ L+K + ++AV T Sbjct: 17 EVLSFEEIIRLGKIFAANGIEKIRLTGGEPLLRKGIEFLIEELSKLKTWNGKPLDVAVTT 76 Query: 119 NG 120 NG Sbjct: 77 NG 78 >gi|294055876|ref|YP_003549534.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Coraliomargarita akajimensis DSM 45221] gi|293615209|gb|ADE55364.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Coraliomargarita akajimensis DSM 45221] Length = 173 Score = 34.6 bits (79), Expect = 8.7, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 20/84 (23%) Query: 20 AGRVA-VFCRFSGCNLWSGREQDRLSAQCRFCDTDF--VGIQGTKGGRYNVDQLADLIEE 76 G +F SGC +C C + G R+ + L +I + Sbjct: 15 IGTRCTLFV--SGC-----------EHRCPGC---YNASTWPADSGHRFTDELLEQIIHD 58 Query: 77 QWITGEKEGRYCVLTGGEPLLQVD 100 T R LTGG+PLL + Sbjct: 59 LQDTRILR-RGLSLTGGDPLLYAN 81 >gi|258405854|ref|YP_003198596.1| molybdenum cofactor biosynthesis protein A [Desulfohalobium retbaense DSM 5692] gi|257798081|gb|ACV69018.1| molybdenum cofactor biosynthesis protein A [Desulfohalobium retbaense DSM 5692] Length = 329 Score = 34.6 bits (79), Expect = 8.7, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 14/89 (15%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR + +C +C +++ LI G + R LTGGEP ++ D Sbjct: 18 DRCNLRCFYCRNKEGLQFIPHHKILRYEEMLRLIAAVDSMGVSKVR---LTGGEPFVRRD 74 Query: 101 VPLIQALNKR-------GFEIAVETNGTI 122 I+ L + F + TNGT Sbjct: 75 --FIEFLEQAAERFPQTDFRVT--TNGTY 99 >gi|167911569|ref|ZP_02498660.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 112] Length = 336 Score = 34.6 bits (79), Expect = 8.7, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 21/107 (19%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77 GR + R S DR +C +C D F+ R +V L L Sbjct: 17 GRAVTYVRLS--------VTDRCDFRCVYCMTQDMRFL-------PRSDVLTLDALAALA 61 Query: 78 WITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKR-GF-EIAVETNGT 121 R LTGGEPL++ L++ + + G E+A+ TNG Sbjct: 62 RACVALGVRRIRLTGGEPLVRPGLTTLVERIARLPGLDELALTTNGA 108 >gi|149917134|ref|ZP_01905634.1| Radical SAM [Plesiocystis pacifica SIR-1] gi|149822050|gb|EDM81443.1| Radical SAM [Plesiocystis pacifica SIR-1] Length = 381 Score = 34.6 bits (79), Expect = 8.7, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 46/138 (33%), Gaps = 33/138 (23%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C C T + + +V ++AD++ + + +T Sbjct: 50 CNL-----------RCSMCRT----WEDPRRDELSVPEIADIMRQLPRLTWLD-----VT 89 Query: 92 GGEPLLQVD---VPLIQALNKRGFEI-AVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147 GGEP L+ D + L A + + TNG W C I Sbjct: 90 GGEPFLRKDAKALMLTIARTAQALTVLHFPTNG---------WFTKRVVETCAELIAERP 140 Query: 148 ELKLVFPQVNVSPENYIG 165 E++L+ PE Sbjct: 141 EIQLIVTVSVDGPEAVHD 158 >gi|323464035|gb|ADX76188.1| radical SAM domain protein [Staphylococcus pseudintermedius ED99] Length = 379 Score = 34.6 bits (79), Expect = 8.8, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 12/91 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99 +C C + +Q + + ++E R +TGGEP+ +V Sbjct: 44 RCSHCAVGYT-LQTKDPDILPMSLILQRLDEI-----PTLRTISITGGEPMFSKKSIREV 97 Query: 100 DVPLIQALNKRGFEIAVETNGTIEPPQGIDW 130 PL++ +RG + + +N T+ + +D Sbjct: 98 VKPLLKYAYQRGIYVQLNSNLTLPLDRYLDI 128 >gi|319892917|ref|YP_004149792.1| hypothetical protein SPSINT_1628 [Staphylococcus pseudintermedius HKU10-03] gi|317162613|gb|ADV06156.1| Hypothetical protein SPSINT_1628 [Staphylococcus pseudintermedius HKU10-03] Length = 379 Score = 34.6 bits (79), Expect = 8.8, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 12/91 (13%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99 +C C + +Q + + ++E R +TGGEP+ +V Sbjct: 44 RCSHCAVGYT-LQTKDPDILPMSLILQRLDEI-----PTLRTISITGGEPMFSKKSIREV 97 Query: 100 DVPLIQALNKRGFEIAVETNGTIEPPQGIDW 130 PL++ +RG + + +N T+ + +D Sbjct: 98 VKPLLKYAYQRGIYVQLNSNLTLPLDRYLDI 128 >gi|305663800|ref|YP_003860088.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230] gi|304378369|gb|ADM28208.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230] Length = 378 Score = 34.6 bits (79), Expect = 8.8, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 28/116 (24%) Query: 15 GE-GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70 GE G + +AVF F+GCNL C FC D + RY +D+ Sbjct: 132 GEYGYYN--LAVF--FAGCNL-----------DCVFCQNWDHKDIITSWDLRKRYTIDR- 175 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI---QALNKRG---FEIAVETNG 120 + + E+ + ++ C GG+P + L + + +G I ETNG Sbjct: 176 -EYLIEKALKNDRITCICFF-GGDPGPHIIDALYISRKIVENKGSSIKRICWETNG 229 >gi|91203309|emb|CAJ72948.1| similar to heme d1 biosynthesis protein NirJ [Candidatus Kuenenia stuttgartiensis] Length = 629 Score = 34.6 bits (79), Expect = 8.8, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 14/90 (15%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL QC C D + + + LI++ + +LT Sbjct: 16 CNL-----------QCDHCYLDANALTKKSPYELDTKEGFKLIDQ--MAELNPNLLLILT 62 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120 GGEPLL+ D+ L +K+G + + TNG Sbjct: 63 GGEPLLRNDIYDLSHYASKKGMMVVLGTNG 92 >gi|317493548|ref|ZP_07951969.1| KamA family protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918491|gb|EFV39829.1| KamA family protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 344 Score = 34.6 bits (79), Expect = 8.9, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 5/66 (7%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103 + CR+C Q +G + N Q D I +Q E + +GG+PL+ D L Sbjct: 123 AVNCRYCFRRHFPYQDNQGNKANWRQALDYIRQQPELDE-----IIFSGGDPLMAKDHEL 177 Query: 104 IQALNK 109 L++ Sbjct: 178 AWLLDE 183 >gi|258654860|ref|YP_003204016.1| molybdenum cofactor biosynthesis protein A [Nakamurella multipartita DSM 44233] gi|258558085|gb|ACV81027.1| molybdenum cofactor biosynthesis protein A [Nakamurella multipartita DSM 44233] Length = 356 Score = 34.6 bits (79), Expect = 8.9, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 13/87 (14%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY----CVLTGGEPL 96 DR + +C +C + D+L E + TGGEPL Sbjct: 47 DRCNLRCTYC------MPAEGLNWQPADELLSDDELVRVIALAVEHLGIEEIRFTGGEPL 100 Query: 97 LQVDVP-LIQALNKR--GFEIAVETNG 120 L+ +P LI + EI++ TNG Sbjct: 101 LRRGLPQLIARVADLRPRPEISLTTNG 127 >gi|296169635|ref|ZP_06851253.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895632|gb|EFG75328.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 359 Score = 34.6 bits (79), Expect = 9.0, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 9/85 (10%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 DR + +C +C G+ G + D+L L+ TGGEPLL Sbjct: 46 DRCNLRCSYC-MPAEGLDWLPGEQLLRPDELTRLM--HIAVTRLGITSVRFTGGEPLLAR 102 Query: 100 DVP----LIQALNKRGFEIAVETNG 120 + + L R EI++ TNG Sbjct: 103 HLEEVVAAVAGLRPRP-EISLTTNG 126 >gi|265762579|ref|ZP_06091147.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263255187|gb|EEZ26533.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 375 Score = 34.6 bits (79), Expect = 9.0, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 11/93 (11%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90 + +C +C ++ G T +Y+ DQ+ + + + G +C Sbjct: 10 CYVPVTACTLRCHYC---YITQHGLFANKTPRFKYSPDQVRKALSIERLGGICLINFCAA 66 Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122 GE LL D + I+A+ + G + + TN T+ Sbjct: 67 --GETLLHKDILSYIRAILEEGHYVMIVTNATV 97 >gi|288932339|ref|YP_003436399.1| radical SAM protein [Ferroglobus placidus DSM 10642] gi|288894587|gb|ADC66124.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642] Length = 331 Score = 34.6 bits (79), Expect = 9.0, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 9/77 (11%) Query: 47 CRFCDT--DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102 C +C + G V L D+ EE + +TGGEPLL++D + Sbjct: 38 CYYCPISEEKKGKDVVYANERPVRSLEDIAEEINAMSAEG---IAITGGEPLLKLDYVLE 94 Query: 103 LIQALNKRGFEIAVETN 119 +I+A + I + T+ Sbjct: 95 VIEAFDD--LHIHLYTS 109 >gi|253576912|ref|ZP_04854236.1| radical SAM domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843643|gb|EES71667.1| radical SAM domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 420 Score = 34.6 bits (79), Expect = 9.0, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 23/101 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN--VDQLADLIEEQWITGEKEGRYCV 89 CNL C +C + +G G N + + ++ + Sbjct: 24 CNL-----------ACDYC--YYSTCKGKPGPNINRIDSSVLETFIRNYMKVSRGAVVFA 70 Query: 90 LTGGEPLLQVDVPL-----IQALNKRGFEI---AVETNGTI 122 GGEPLL +QAL+ I +++TNGT+ Sbjct: 71 WQGGEPLLAGHAFFEQVVRLQALHAPPRTIISNSLQTNGTL 111 >gi|213963661|ref|ZP_03391912.1| probable molybdopterin cofactor synthesis protein A [Capnocytophaga sputigena Capno] gi|213953656|gb|EEB64987.1| probable molybdopterin cofactor synthesis protein A [Capnocytophaga sputigena Capno] Length = 330 Score = 34.6 bits (79), Expect = 9.0, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 7/85 (8%) Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL- 97 D + +C +C D F +K D++ + + T + +TGGEPL+ Sbjct: 22 DSCNFRCLYCMPDEPFSSSSSSKLMS--SDEIFGI--SKIFTEQFGISKIRITGGEPLVR 77 Query: 98 QVDVPLIQALNKRGFEIAVETNGTI 122 +I+ L + V TNG + Sbjct: 78 HDFAEIIEKLATLQVSLGVTTNGVL 102 >gi|188990608|ref|YP_001902618.1| pyrroloquinoline quinone biosynthesis protein PqqE [Xanthomonas campestris pv. campestris str. B100] gi|226704998|sp|B0RQ25|PQQE_XANCB RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|167732368|emb|CAP50560.1| Coenzyme PQQ synthesis protein E [Xanthomonas campestris pv. campestris] Length = 376 Score = 34.6 bits (79), Expect = 9.0, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 6/80 (7%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R C +C + L+E+ G + + +GGEP+L+ D+ Sbjct: 17 RCPLACPYCSNPIAL--AALREEMDTAGWRSLLEQAAEMGVLQAHF---SGGEPMLRKDL 71 Query: 102 P-LIQALNKRGFEIAVETNG 120 P L+ G + T+G Sbjct: 72 PELVAHARALGLYSNLITSG 91 >gi|161338490|emb|CAO03077.1| 1-methyl alkyl succinate synthase activase [Azoarcus sp. HxN1] Length = 325 Score = 34.6 bits (79), Expect = 9.0, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119 G +VD++ ++E+ + + G L+GG+P D L++ +R ++TN Sbjct: 115 GRTMSVDEIMTIVEQDMLFYKNSGGGFTLSGGDPTAFPDFSETLLREAKRRELHTCMDTN 174 Query: 120 GTIEPP 125 G Sbjct: 175 GHCAWS 180 >gi|159042455|ref|YP_001541707.1| radical SAM domain-containing protein [Caldivirga maquilingensis IC-167] gi|157921290|gb|ABW02717.1| Radical SAM domain protein [Caldivirga maquilingensis IC-167] Length = 382 Score = 34.6 bits (79), Expect = 9.0, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 33 NLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 L E + CR C I G + D+ LIE+ G K +LT Sbjct: 9 PLLVFWETTKACPLSCRHC--RANAILKPLPGELSTDEGKRLIEQLPEFG-KPTPVLILT 65 Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150 GG+PL++ D+ LI +AV P VS K D I EL+ Sbjct: 66 GGDPLMREDIFELIDYAKSLNVPVAV------SP-------TVSEKLLSDNVI---DELR 109 Query: 151 LV 152 V Sbjct: 110 RV 111 >gi|7649371|emb|CAB89080.1| alternative III protein [Acinetobacter calcoaceticus] Length = 331 Score = 34.6 bits (79), Expect = 9.0, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 10/114 (8%) Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140 +GGEPL+ Q L+ +++GF + T+G G+D I VS +A Sbjct: 8 FSGGEPLVRQDLEQLVAHAHQQGFYTNLITSGMGLTEQRIADLKQAGLDHIQVSFQASDP 67 Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194 + K F Q +D+ L + + I C + Sbjct: 68 VVNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIEQIIELCLE 120 >gi|229032383|ref|ZP_04188354.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1271] gi|228728946|gb|EEL79951.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1271] Length = 339 Score = 34.6 bits (79), Expect = 9.1, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 16/76 (21%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L + G ++ R LTG Sbjct: 24 DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKLFVSIGVRKIR---LTG 76 Query: 93 GEPLLQVDV-PLIQAL 107 GEPLL+ D+ LI L Sbjct: 77 GEPLLRKDLTKLIARL 92 >gi|198242498|ref|YP_002217894.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937014|gb|ACH74347.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 431 Score = 34.6 bits (79), Expect = 9.1, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 12/102 (11%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GC++ + + C +C + + + + K R + + L I + + Sbjct: 4 AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63 Query: 87 YCVLTGGEPLLQVDVPLIQA---LNKR---GFEI--AVETNG 120 GGEP + + +P + L ++ G +I A++TNG Sbjct: 64 DFAWQGGEPTM-MGLPFFRRVVTLCEKYGDGRKITHALQTNG 104 >gi|168467617|ref|ZP_02701454.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195629974|gb|EDX48634.1| chondroitin sulfate/heparin utilization regulation protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 431 Score = 34.6 bits (79), Expect = 9.1, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 12/102 (11%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 +GC++ + + C +C + + + + K R + + L I + + Sbjct: 4 AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63 Query: 87 YCVLTGGEPLLQVDVPLIQA---LNKR---GFEI--AVETNG 120 GGEP + + +P + L ++ G +I A++TNG Sbjct: 64 DFAWQGGEPTM-MGLPFFRRVVTLCEKYGDGRKITHALQTNG 104 >gi|119472284|ref|ZP_01614444.1| molybdenum cofactor biosynthesis protein A [Alteromonadales bacterium TW-7] gi|119445006|gb|EAW26302.1| molybdenum cofactor biosynthesis protein A [Alteromonadales bacterium TW-7] Length = 323 Score = 34.6 bits (79), Expect = 9.1, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 18/92 (19%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CN CDT + + ++ L + + + +T Sbjct: 21 CNFSCTYCLPNGYQ----CDTPRNFL-----NKNEINTLVNAFAQLG------TKKVRIT 65 Query: 92 GGEPLLQVDV-PLIQALNK-RGFE-IAVETNG 120 GGEP L+ DV +I+ G E +A+ TNG Sbjct: 66 GGEPCLRSDVTDIIKQCKNTPGIEKVAITTNG 97 >gi|114328590|ref|YP_745747.1| pyrroloquinoline quinone biosynthesis protein PqqE [Granulibacter bethesdensis CGDNIH1] gi|122326456|sp|Q0BQS8|PQQE_GRABC RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E gi|114316764|gb|ABI62824.1| coenzyme PQQ synthesis protein E [Granulibacter bethesdensis CGDNIH1] Length = 374 Score = 34.6 bits (79), Expect = 9.1, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 14/102 (13%) Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 R QC +C + G ++ +++E G + + +GGEP+++ D+ Sbjct: 17 RCPLQCPYCSNPLELERA--GIELKTEEWLRIMDEAAELGVLQMHF---SGGEPMVRKDL 71 Query: 102 P-LIQALNKRGFEIAVETNGTI--------EPPQGIDWICVS 134 P LI +R + T+G + GID I +S Sbjct: 72 PELIARAVERQMYTNIITSGVLLDEAMMERLMKAGIDHIQLS 113 >gi|15668990|ref|NP_247794.1| pyruvate formate-lyase activating enzyme [Methanocaldococcus jannaschii DSM 2661] gi|3915955|sp|Q58214|Y804_METJA RecName: Full=Uncharacterized protein MJ0804 gi|2826326|gb|AAB98804.1| pyruvate formate-lyase activating enzyme (act) [Methanocaldococcus jannaschii DSM 2661] Length = 286 Score = 34.6 bits (79), Expect = 9.1, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 29/96 (30%) Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88 CNL C +C + ++ K G Y + A+ + Sbjct: 47 TQKCNL-----------NCIYC---YSRLKTVKRGIYGNLEEAETVTISQY--------- 83 Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122 GEPLL ++ I+ G + ++TNGT+ Sbjct: 84 ----GEPLLDLEGVKKAIEFCKDLGLRVDLQTNGTL 115 >gi|67923596|ref|ZP_00517068.1| Radical SAM [Crocosphaera watsonii WH 8501] gi|67854566|gb|EAM49853.1| Radical SAM [Crocosphaera watsonii WH 8501] Length = 248 Score = 34.6 bits (79), Expect = 9.1, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 35/135 (25%) Query: 27 CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79 RF GC L +C +C D V G +VD+L IE+ Sbjct: 25 IRFIVFTKGCPL-----------RCLYCHNADCRHV----ENGKLVSVDELISEIEKYQS 69 Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWI 131 + G ++GGEPL+Q + + + ++ G A++T+G + D + Sbjct: 70 YFKFSGGGVTVSGGEPLMQPEFVKAIFEECHRLGIHTALDTSGYVNVNIAKPVLEYADLV 129 Query: 132 -----CVSPKAGCDL 141 PK + Sbjct: 130 LLDIKSFDPKVYKKV 144 >gi|189219977|ref|YP_001940617.1| Radical SAM superfamily enzyme [Methylacidiphilum infernorum V4] gi|189186835|gb|ACD84020.1| Radical SAM superfamily enzyme [Methylacidiphilum infernorum V4] Length = 334 Score = 34.6 bits (79), Expect = 9.2, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%) Query: 75 EEQWITGEKE-GRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWIC 132 E+ W E+ + GGEPL+ ++ ++ L +R I + TN I + ID Sbjct: 61 EQCWKAAEECGAPIVSIAGGEPLVHKEIDRIVAGLIERKKYIYLCTN-AILLRKRIDLFK 119 Query: 133 VSPKAGCDLKIKGGQE 148 S + + G +E Sbjct: 120 PSKYLTFSIHLDGLKE 135 >gi|167919579|ref|ZP_02506670.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei BCC215] Length = 332 Score = 34.6 bits (79), Expect = 9.2, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 21/107 (19%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77 GR + R S DR +C +C D F+ R +V L L Sbjct: 13 GRAVTYVRLS--------VTDRCDFRCVYCMTQDMRFL-------PRSDVLTLDALAALA 57 Query: 78 WITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKR-GF-EIAVETNGT 121 R LTGGEPL++ L++ + + G E+A+ TNG Sbjct: 58 RACVALGVRRIRLTGGEPLVRPGLTTLVERIARLPGLDELALTTNGA 104 >gi|124005079|ref|ZP_01689921.1| molybdenum cofactor biosynthesis protein A [Microscilla marina ATCC 23134] gi|123989331|gb|EAY28892.1| molybdenum cofactor biosynthesis protein A [Microscilla marina ATCC 23134] Length = 334 Score = 34.6 bits (79), Expect = 9.2, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 23/171 (13%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 N DR + +C +C GI+ K + +++ L+ G + R LT Sbjct: 16 NYLRLAVTDRCNLRCFYC-MPEEGIKYLPKKHLLSYEEMERLVRLLASMGVNKIR---LT 71 Query: 92 GGEPLLQVDV-PLIQALNK-RGF-EIAVETNGTI-------EPPQGIDWICVS----PKA 137 GGEP L+ D+ +Q + G E+ + TNG + GI + +S K Sbjct: 72 GGEPFLRKDLINFMQTIRNIEGINELNITTNGVLTEQYIPAMVKMGISSVNLSLDTLDKE 131 Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 LKI E V ++ E+ I + ++ M G E+ LA Sbjct: 132 RF-LKITRRNEFDKVMRCLDALIESGIK---TKINMVVMAGQNTEDIVPLA 178 >gi|118592266|ref|ZP_01549659.1| nitrite reductase heme biosynthesis J protein [Stappia aggregata IAM 12614] gi|118435238|gb|EAV41886.1| nitrite reductase heme biosynthesis J protein [Stappia aggregata IAM 12614] Length = 406 Score = 34.6 bits (79), Expect = 9.2, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 20/107 (18%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 + R + +CR C T + G DQ +E+ G +L+G Sbjct: 28 PVVIWNLTRRCNLKCRHCYTVSADVDFP--GELTHDQAMATLEDL---GRFGIPALILSG 82 Query: 93 GEPLLQVDV--------PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131 GEPL + D+ L++ L A+ TNGT + D + Sbjct: 83 GEPLDRKDLFEIAGRARSLVRML-------ALSTNGTRLHGETADKV 122 >gi|254246046|ref|ZP_04939367.1| Coproporphyrinogen III oxidase [Burkholderia cenocepacia PC184] gi|124870822|gb|EAY62538.1| Coproporphyrinogen III oxidase [Burkholderia cenocepacia PC184] Length = 404 Score = 34.6 bits (79), Expect = 9.2, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 32/106 (30%), Gaps = 17/106 (16%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87 L +C +CD KG R+ D + ++ Sbjct: 28 PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPEADYLDALRADLEQALPLVWGRQVHT 84 Query: 88 CVLTGGEPLLQVDVPL------IQAL--NKRGFEIAVETN-GTIEP 124 + GG P L L ++AL EI +E N GT E Sbjct: 85 VFIGGGTPSLLSAAGLDRMLSDVRALLPLDADAEITLEANPGTFEA 130 >gi|107022074|ref|YP_620401.1| coproporphyrinogen III oxidase [Burkholderia cenocepacia AU 1054] gi|116689018|ref|YP_834641.1| coproporphyrinogen III oxidase [Burkholderia cenocepacia HI2424] gi|170732307|ref|YP_001764254.1| coproporphyrinogen III oxidase [Burkholderia cenocepacia MC0-3] gi|105892263|gb|ABF75428.1| Putative oxygen-independent coproporphyrinogen III oxidase [Burkholderia cenocepacia AU 1054] gi|116647107|gb|ABK07748.1| putative oxygen-independent coproporphyrinogen III oxidase [Burkholderia cenocepacia HI2424] gi|169815549|gb|ACA90132.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia cenocepacia MC0-3] Length = 404 Score = 34.6 bits (79), Expect = 9.2, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 32/106 (30%), Gaps = 17/106 (16%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87 L +C +CD KG R+ D + ++ Sbjct: 28 PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPEADYLDALRADLEQALPLVWGRQVHT 84 Query: 88 CVLTGGEPLLQVDVPL------IQAL--NKRGFEIAVETN-GTIEP 124 + GG P L L ++AL EI +E N GT E Sbjct: 85 VFIGGGTPSLLSAAGLDRMLSDVRALLPLDADAEITLEANPGTFEA 130 >gi|167894937|ref|ZP_02482339.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 7894] Length = 338 Score = 34.6 bits (79), Expect = 9.2, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 21/107 (19%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77 GR + R S DR +C +C D F+ R +V L L Sbjct: 19 GRAVTYVRLS--------VTDRCDFRCVYCMTQDMRFL-------PRSDVLTLDALAALA 63 Query: 78 WITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKR-GF-EIAVETNGT 121 R LTGGEPL++ L++ + + G E+A+ TNG Sbjct: 64 RACVALGVRRIRLTGGEPLVRPGLTTLVERIARLPGLDELALTTNGA 110 >gi|95929593|ref|ZP_01312335.1| Radical SAM [Desulfuromonas acetoxidans DSM 684] gi|95134290|gb|EAT15947.1| Radical SAM [Desulfuromonas acetoxidans DSM 684] Length = 476 Score = 34.6 bits (79), Expect = 9.2, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 8/101 (7%) Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95 R + C +C T I D + G + +GGEP Sbjct: 80 CLFINGRCNCDCFYCPTSQQEIGQPTTNSIEFRHAEDYVLYLQRFGFRGA---SFSGGEP 136 Query: 96 LLQVDVPL--IQALNKR---GFEIAVETNGTIEPPQGIDWI 131 LL D L ++ + F + TNG++ Q +D + Sbjct: 137 LLTFDRTLHFLKTIKAHMPSDFHTWLYTNGSLLTDQMVDQL 177 >gi|326204016|ref|ZP_08193877.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] gi|325985783|gb|EGD46618.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] Length = 456 Score = 34.6 bits (79), Expect = 9.3, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 16/90 (17%) Query: 23 VAVFCRFSGCNLWSGREQDRLS-----------AQCRFCDTDFVGIQGTKGGRYNVDQLA 71 A+F R +++ + +CR+C D + + +++ Sbjct: 95 PAIFLRTED-HVFDPYNLEIPKTISFHVTSTCNKECRYCYLD-AKRENLEKDALTFEEVV 152 Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101 +I+E G + Y TGGEP L+ D+ Sbjct: 153 RMIDEAAAIGVYKILY---TGGEPFLRKDL 179 >gi|257063092|ref|YP_003142764.1| hypothetical protein Shel_03520 [Slackia heliotrinireducens DSM 20476] gi|256790745|gb|ACV21415.1| hypothetical protein Shel_03520 [Slackia heliotrinireducens DSM 20476] Length = 212 Score = 34.6 bits (79), Expect = 9.3, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 20/73 (27%) Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86 GC S C C DT + ++ D + I E+ + G Sbjct: 26 QGC-----------SIACPGCISKDTWDKQGGTSADEQWLSDLIIKTIREENLDG----- 69 Query: 87 YCVLTGGEPLLQV 99 V+TGGEP Q Sbjct: 70 -IVVTGGEPTEQA 81 >gi|205829721|sp|Q2IHD1|Y4229_ANADE RecName: Full=Probable RNA methyltransferase Adeh_4229 Length = 338 Score = 34.6 bits (79), Expect = 9.3, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 59/186 (31%), Gaps = 22/186 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 ++ Q + C FC T +G+ + V QL + E+ V G Sbjct: 97 HVVCLSSQAGCALGCAFCATAKLGLDRSLRSWEMVSQLLAV----RADSERPITGVVFMG 152 Query: 93 -GEPLLQVDVPLIQ--ALNK-RG-----FEIAVETNGTIE------PPQGIDWICVSPKA 137 GEP L D L AL G I++ T G + +C+S A Sbjct: 153 QGEPFLNYDEVLAAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGHKFRLCISLNA 212 Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-RFSLQP--MDGPFLEENTNLAISYCFQ 194 K + ++ FP + R +L+ + G + E A+ Sbjct: 213 AMPWKRRALMPVEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLA 272 Query: 195 NPKWRL 200 RL Sbjct: 273 GIPVRL 278 >gi|163787535|ref|ZP_02181982.1| hypothetical protein FBALC1_03312 [Flavobacteriales bacterium ALC-1] gi|159877423|gb|EDP71480.1| hypothetical protein FBALC1_03312 [Flavobacteriales bacterium ALC-1] Length = 405 Score = 34.6 bits (79), Expect = 9.3, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Query: 43 LSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 ++ +C CD + K + + L ++I + G + LTGGEPL++ Sbjct: 134 VTKKCPLQCDHCYAWDILNKKEQLRPEDLKNIIGKLQKMGTAQIH---LTGGEPLIKP 188 >gi|154503579|ref|ZP_02040639.1| hypothetical protein RUMGNA_01403 [Ruminococcus gnavus ATCC 29149] gi|260589912|ref|ZP_05855825.1| putative elongator protein 3/MiaB/NifB [Blautia hansenii DSM 20583] gi|153795679|gb|EDN78099.1| hypothetical protein RUMGNA_01403 [Ruminococcus gnavus ATCC 29149] gi|260539719|gb|EEX20288.1| putative elongator protein 3/MiaB/NifB [Blautia hansenii DSM 20583] Length = 426 Score = 34.6 bits (79), Expect = 9.3, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 12/111 (10%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N + + C FC + + ++ + + + + + +LTG Sbjct: 76 NTVYLMVTRKCNMNCDFC-AISANDKLRPEKEFKLEDIQNKV--IPFFQKNKPHKMILTG 132 Query: 93 GEPLLQVDVPLIQALNKRG--FEIAVETNG-------TIEPPQGIDWICVS 134 GEPL++ + I + G I +++NG T + ID I S Sbjct: 133 GEPLIKDQIVEIAKALRNGLTCPITLQSNGLAITRELTEQLKGYIDEIDFS 183 >gi|86160645|ref|YP_467430.1| radical SAM family protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85777156|gb|ABC83993.1| Radical SAM [Anaeromyxobacter dehalogenans 2CP-C] Length = 309 Score = 34.6 bits (79), Expect = 9.3, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 59/186 (31%), Gaps = 22/186 (11%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 ++ Q + C FC T +G+ + V QL + E+ V G Sbjct: 68 HVVCLSSQAGCALGCAFCATAKLGLDRSLRSWEMVSQLLAV----RADSERPITGVVFMG 123 Query: 93 -GEPLLQVDVPLIQ--ALNK-RG-----FEIAVETNGTIE------PPQGIDWICVSPKA 137 GEP L D L AL G I++ T G + +C+S A Sbjct: 124 QGEPFLNYDEVLAAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGHKFRLCISLNA 183 Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-RFSLQP--MDGPFLEENTNLAISYCFQ 194 K + ++ FP + R +L+ + G + E A+ Sbjct: 184 AMPWKRRALMPVEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLA 243 Query: 195 NPKWRL 200 RL Sbjct: 244 GIPVRL 249 >gi|114563155|ref|YP_750668.1| radical SAM domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114334448|gb|ABI71830.1| Radical SAM domain protein [Shewanella frigidimarina NCIMB 400] Length = 320 Score = 34.6 bits (79), Expect = 9.3, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 17/92 (18%) Query: 42 RLSAQCRFCDTDFVG---IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98 S +C CDT K Y V+Q+ ++I L+GGE LQ Sbjct: 103 WDSTKCSQCDTCLAVCPRQSTPKTSHYTVEQMLEVI----YGQRHFINGITLSGGEASLQ 158 Query: 99 VDVPLIQAL--------NKRGFEIAVETNGTI 122 +P I L + ++TNG++ Sbjct: 159 --LPFIIELFSAIKSSEHLSHLSCMLDTNGSL 188 >gi|302348952|ref|YP_003816590.1| predicted Fe-S osidoreductase [Acidilobus saccharovorans 345-15] gi|302329364|gb|ADL19559.1| predicted Fe-S osidoreductase [Acidilobus saccharovorans 345-15] Length = 591 Score = 34.6 bits (79), Expect = 9.4, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 10/91 (10%) Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY--CVLT 91 L + +R + C +C K G Y + +L+ Q +K+G +T Sbjct: 145 LVNLVVTNRCNLSCYYC-----FFYAEKAG-YVYEPSIELLRYQVRQIKKQGFTMAIQIT 198 Query: 92 GGEPLLQVDVP-LIQALNKRGFE-IAVETNG 120 GGEP L+ D+P +I+ L + G I + T G Sbjct: 199 GGEPTLREDLPEIIKMLREEGVRHIQLNTAG 229 >gi|300854370|ref|YP_003779354.1| pyruvate formate-lyase activating enzyme [Clostridium ljungdahlii DSM 13528] gi|300434485|gb|ADK14252.1| pyruvate formate-lyase activating enzyme [Clostridium ljungdahlii DSM 13528] Length = 310 Score = 34.6 bits (79), Expect = 9.4, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRG 111 + G G V +L +++ I + G L+GGE Q + L++ + G Sbjct: 102 YAGALNLAGNTRTVKELLLELKKDNIYYRRSGGGITLSGGEVTAQPEFAEELLKGCKQNG 161 Query: 112 FEIAVET 118 + A+ET Sbjct: 162 WHTAIET 168 >gi|312113463|ref|YP_004011059.1| coenzyme PQQ biosynthesis protein E [Rhodomicrobium vannielii ATCC 17100] gi|311218592|gb|ADP69960.1| coenzyme PQQ biosynthesis protein E [Rhodomicrobium vannielii ATCC 17100] Length = 375 Score = 34.6 bits (79), Expect = 9.4, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 24/107 (22%) Query: 42 RLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96 R QC +C ++ T+G R +Q ADL L+GGEP Sbjct: 31 RCPLQCPYCSNPLTLLKAADELDTRGWRSAFEQAADL----------GVLQVHLSGGEPT 80 Query: 97 LQVDV-PLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134 L+ D+ + AL+ RG + T G G+D + +S Sbjct: 81 LRADLDDFVAALSARGVYTNLITAGVTQTRERVARLADCGLDHVQLS 127 >gi|138894071|ref|YP_001124524.1| thioredoxin-like oxidoreductase [Geobacillus thermodenitrificans NG80-2] gi|196250260|ref|ZP_03148953.1| YfkB-like domain protein [Geobacillus sp. G11MC16] gi|134265584|gb|ABO65779.1| Thioredoxin-like oxidoreductase [Geobacillus thermodenitrificans NG80-2] gi|196210149|gb|EDY04915.1| YfkB-like domain protein [Geobacillus sp. G11MC16] Length = 374 Score = 34.6 bits (79), Expect = 9.4, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100 +C C + +D L +EE R +TGGEP+L + Sbjct: 44 RCEHCAVGYTLATKDPDA-LPLDLLIRRLEEI-----PHLRSLSITGGEPMLSLTSVERY 97 Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124 VPL++ ++RG + +N T++ Sbjct: 98 VVPLLRYAHERGVRTQLNSNLTLDL 122 >gi|14521206|ref|NP_126681.1| heme biosynthesis protein related [Pyrococcus abyssi GE5] gi|5458424|emb|CAB49912.1| Radical SAM family protein [Pyrococcus abyssi GE5] Length = 441 Score = 34.6 bits (79), Expect = 9.4, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 33/144 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL C +VG + +++ + LI + G + + Sbjct: 121 CNLKC--------EHC------YVGTRN-NPATLSLEVIKKLIHDMEKLGCYQLA---IG 162 Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGID----------WICVS---PKA 137 GGEP L + +++ ++K + TNGT + ++ + +S PK Sbjct: 163 GGEPTLHPNFEKILEIIHKSKIFAHIVTNGTTNLSEYLEKYANKKKRSFEVTISIDGPKE 222 Query: 138 GCDLKIKGGQELKLVFPQVNVSPE 161 + K++ + + + + E Sbjct: 223 IHE-KVRKSVKFEEIINNIKKLAE 245 >gi|313892206|ref|ZP_07825799.1| radical SAM domain protein [Dialister microaerophilus UPII 345-E] gi|313119344|gb|EFR42543.1| radical SAM domain protein [Dialister microaerophilus UPII 345-E] Length = 305 Score = 34.6 bits (79), Expect = 9.5, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 14/68 (20%) Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83 VF F+GCNL C +C ++ + KG +V++L ++ E G Sbjct: 57 TVF--FAGCNL-----------SCVYC-QNYEISELRKGKEISVERLREIYHELIARGAH 102 Query: 84 EGRYCVLT 91 T Sbjct: 103 NIDLVTPT 110 >gi|225574938|ref|ZP_03783548.1| hypothetical protein RUMHYD_03017 [Blautia hydrogenotrophica DSM 10507] gi|225037785|gb|EEG48031.1| hypothetical protein RUMHYD_03017 [Blautia hydrogenotrophica DSM 10507] Length = 374 Score = 34.6 bits (79), Expect = 9.5, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 15/83 (18%) Query: 47 CRFCDT---------DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97 C CDT + I G + ++ E W G +GGEP++ Sbjct: 151 CENCDTFDCANACAYEAARISGKYRSVGEIMRILRRDREYWDEKGGPG----FSGGEPMV 206 Query: 98 QVDV--PLIQALNKRGFEIAVET 118 Q + ++ + G ++ET Sbjct: 207 QKEFLYEVLLKCKEEGMNTSIET 229 >gi|153809478|ref|ZP_01962146.1| hypothetical protein BACCAC_03796 [Bacteroides caccae ATCC 43185] gi|149127859|gb|EDM19082.1| hypothetical protein BACCAC_03796 [Bacteroides caccae ATCC 43185] Length = 167 Score = 34.6 bits (79), Expect = 9.5, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 29/102 (28%) Query: 15 GEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL 70 GEG R +GC S C C G +++ Sbjct: 24 GEG---------IRYSIYLAGC-----------SHHCPGCHNPESWNPNA-GEELTEEKI 62 Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKR 110 +I E +G +GG+PL + + L++ + + Sbjct: 63 QSIIREIKANPLLDG--VTFSGGDPLFYPEEFLALVKRVKEE 102 >gi|126440114|ref|YP_001059527.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 668] gi|126219607|gb|ABN83113.1| molybdenum cofactor biosynthesis protein A [Burkholderia pseudomallei 668] Length = 401 Score = 34.6 bits (79), Expect = 9.5, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 21/107 (19%) Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77 GR + R S DR +C +C D F+ R +V L L Sbjct: 42 GRAVTYVRLS--------VADRCDFRCVYCMAQDMRFL-------PRSDVLTLDALAALA 86 Query: 78 WITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKR-GF-EIAVETNGT 121 R LTGGEPL++ L++ + + G E+A+ TNG Sbjct: 87 RAFVALGVRRIRLTGGEPLVRPGLTTLVERIARLPGLDELALTTNGA 133 >gi|312880545|ref|ZP_07740345.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260] gi|310783836|gb|EFQ24234.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260] Length = 335 Score = 34.6 bits (79), Expect = 9.5, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 18/107 (16%) Query: 26 FCRFSGCNLWSGREQDRL--------SAQCRFCDTDFVGIQGTKGGRYNVDQLADL-IEE 76 F R+ LW+ R +AQC FC ++ + TKG + +L + + E Sbjct: 19 FIRY----LWNKRRPSLAILDITAVCNAQCPFCPRVYMPEERTKG--FMKMELFERCVNE 72 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122 K+ R + EP L +++ L G I V TNG Sbjct: 73 LKAQRIKDVRLYATS--EPTLHPCFDEIVRRLKAEGMSICVSTNGAF 117 >gi|262377346|ref|ZP_06070570.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] gi|262307799|gb|EEY88938.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] Length = 384 Score = 34.6 bits (79), Expect = 9.5, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 16/106 (15%) Query: 33 NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIE----EQWITGEKEGRY 87 L +C +CD + G + L L+E + ++ Sbjct: 10 PLSLYIHMPWCVRKCPYCDFNSHAVPDGQLSLELEQEYLRALVEDFKTQVDFAQGRQIHS 69 Query: 88 CVLTGGEPLLQVDVP----LIQALN-----KRGFEIAVETN-GTIE 123 + GG P L + P L L G EI +E N GT+E Sbjct: 70 VFIGGGTPSL-ISAPGYQWLFDQLKAVIPFAEGCEITLEANPGTVE 114 >gi|315497432|ref|YP_004086236.1| molybdenum cofactor biosynthesis protein a [Asticcacaulis excentricus CB 48] gi|315415444|gb|ADU12085.1| molybdenum cofactor biosynthesis protein A [Asticcacaulis excentricus CB 48] Length = 337 Score = 34.6 bits (79), Expect = 9.5, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 30/169 (17%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100 DR +C +C ++ + + ++L L G R +TGGEPL++ Sbjct: 24 DRCDLRCTYCMSERQTFL-PRENLLSFEELERLSLFLIDQGVTRLR---ITGGEPLVRRG 79 Query: 101 VPLIQALNKRGFEIAVETNGTIE------------------PPQGIDWICV---SPKAGC 139 + + L + G ++ E G ++ GI I V S AG Sbjct: 80 I--LDFLKRLGAQVH-E--GRLKELTLTTNGTLLAEAAPHLAQAGIRRINVSLDSLDAGT 134 Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188 +I G +LK V ++ + + + +LQ + L E A Sbjct: 135 FRRITRGGDLKKVLDGIDAAQKVGLKVKLNTVALQQDNRGHLPEMIRFA 183 >gi|223938123|ref|ZP_03630020.1| Radical SAM domain protein [bacterium Ellin514] gi|223893167|gb|EEF59631.1| Radical SAM domain protein [bacterium Ellin514] Length = 431 Score = 34.6 bits (79), Expect = 9.5, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 4/85 (4%) Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PL 103 A+C FC K + + D+I+ I+ + Y + GGEPL+ ++ + Sbjct: 99 AKCDFCGFAVDKFDPKKRRSVTLKEAKDVID---ISVKNHIGYMLFVGGEPLVHKELRAM 155 Query: 104 IQALNKRGFEIAVETNGTIEPPQGI 128 ++ + G + TNG++ Q + Sbjct: 156 VRYCAESGIHPMICTNGSLWTDQNM 180 >gi|260060744|ref|YP_003193824.1| putative oxygen-independent coproporphyrinogen III oxidase [Robiginitalea biformata HTCC2501] gi|88784874|gb|EAR16043.1| putative oxygen-independent coproporphyrinogen III oxidase [Robiginitalea biformata HTCC2501] Length = 377 Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 9/129 (6%) Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP- 102 C +CD F K G +L ++ + + G + GG P L Sbjct: 12 KQACHYCDFHFSTTLKHKQGLLEAMEL-EMEQRRDELGGQPAETLYFGGGTPSLLTGAEI 70 Query: 103 --LIQA-----LNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155 LI+ EI +E N PP ++ + +SP + I+ E +L + Sbjct: 71 GQLIRRAAACFGLAADAEITLEANPDDLPPGRLEELALSPVNRLSIGIQSFHETELRWMN 130 Query: 156 VNVSPENYI 164 S + Sbjct: 131 RAHSAREAL 139 >gi|308808442|ref|XP_003081531.1| Cnx2, molybdenum cofactor biosynthesis protein (IC) [Ostreococcus tauri] gi|116059997|emb|CAL56056.1| Cnx2, molybdenum cofactor biosynthesis protein (IC) [Ostreococcus tauri] Length = 376 Score = 34.6 bits (79), Expect = 9.7, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 6/91 (6%) Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 N +R + +C +C G+ T GR + + + + LTG Sbjct: 62 NYLRISLTERCNLRCAYC-MPAEGVDLTPDGRLLTASEVERLVHIFARAGVDK--VRLTG 118 Query: 93 GEPLLQVDVP-LIQALNKR-GFE-IAVETNG 120 GEP ++ D+ +++ ++ G ++V TNG Sbjct: 119 GEPTVRRDLEDIVRRVSAAPGVRDVSVTTNG 149 >gi|15678851|ref|NP_275968.1| molybdenum cofactor biosynthesis protein MoaA-like protein [Methanothermobacter thermautotrophicus str. Delta H] gi|2621921|gb|AAB85329.1| molybdenum cofactor biosynthesis MoaA homolog [Methanothermobacter thermautotrophicus str. Delta H] Length = 497 Score = 34.6 bits (79), Expect = 9.8, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 14/106 (13%) Query: 29 FSGCNLWSGREQDRLSA----------QCRF-CDTDFVGIQGTKG-GRYNVDQLADLIEE 76 GC + G + S +C C F + +++ +++ Sbjct: 75 LKGCPMDCGLCPEHESHTVLGLIDVTNRCNLKCPICFANAAVSNYIYEPTYEEIREMLRN 134 Query: 77 QWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120 GGEP ++ D+ L++ + GF + + TNG Sbjct: 135 LRRNRPVPTPAIQYAGGEPTVRKDIVDLVKLAREEGFTHVQIATNG 180 >gi|329955957|ref|ZP_08296760.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Bacteroides clarus YIT 12056] gi|328525337|gb|EGF52387.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Bacteroides clarus YIT 12056] Length = 166 Score = 34.6 bits (79), Expect = 9.9, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 27/112 (24%) Query: 3 LYSIKEIFL--TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60 + SI EI T+ G G A +GC C C Sbjct: 1 MLSILEILEDTTVDGPGFRTAIYA-----AGCP-----------NGCPGCHNPESW-DIN 43 Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKR 110 +G + D++ + +GG+P+ Q + L A+ +R Sbjct: 44 RGRWMSTDEILQKVLADTFAD------VTFSGGDPMFQPEGFTELAHAIKQR 89 >gi|261402249|ref|YP_003246473.1| molybdenum cofactor biosynthesis protein A [Methanocaldococcus vulcanius M7] gi|261369242|gb|ACX71991.1| molybdenum cofactor biosynthesis protein A [Methanocaldococcus vulcanius M7] Length = 301 Score = 34.6 bits (79), Expect = 9.9, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 25/112 (22%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C G +++ ++ + + + ++ Sbjct: 20 CNL-----------KCFYC--HQEGHLSNNNRSMTAEEIGKIV---RTSTKFGVKKVKIS 63 Query: 92 GGEPLLQVDV-PLIQALNKRGFE-IAVETNGTI-------EPPQGIDWICVS 134 GGEPLL+ DV +I+ + + I++ TNG + G+D + VS Sbjct: 64 GGEPLLRKDVCDIIKNIKDERIKDISLTTNGILLENLAENLKNSGLDRVNVS 115 >gi|229541641|ref|ZP_04430701.1| YfkB-like domain protein [Bacillus coagulans 36D1] gi|229326061|gb|EEN91736.1| YfkB-like domain protein [Bacillus coagulans 36D1] Length = 383 Score = 34.6 bits (79), Expect = 9.9, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 6/40 (15%) Query: 86 RYCVLTGGEPLLQVD------VPLIQALNKRGFEIAVETN 119 R +TGGEP+L +PL+Q ++RG + +N Sbjct: 79 RCISITGGEPMLSTKSVENYVLPLLQYAHERGIRTQINSN 118 >gi|225575795|ref|ZP_03784405.1| hypothetical protein RUMHYD_03888 [Blautia hydrogenotrophica DSM 10507] gi|225037002|gb|EEG47248.1| hypothetical protein RUMHYD_03888 [Blautia hydrogenotrophica DSM 10507] Length = 312 Score = 34.6 bits (79), Expect = 9.9, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVET 118 V +L ++ + EG TGG+P++Q + L ++ + A+ET Sbjct: 112 EMTVGELMQILRRDFNNWGSEGG-VTFTGGDPMMQQEFLLAALKECKRWHIHTAIET 167 >gi|116207734|ref|XP_001229676.1| hypothetical protein CHGG_03160 [Chaetomium globosum CBS 148.51] gi|88183757|gb|EAQ91225.1| hypothetical protein CHGG_03160 [Chaetomium globosum CBS 148.51] Length = 677 Score = 34.6 bits (79), Expect = 9.9, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 19/94 (20%) Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91 CNL +C +C + ++ L G + R LT Sbjct: 104 CNL-----------RCLYCMPEEGVPLSPSRELLTTPEIVMLSSLFVSQGVTKIR---LT 149 Query: 92 GGEPLLQVDV-PLIQ---ALNKRGF-EIAVETNG 120 GGEP ++ D+ PL+Q AL G E+ + TNG Sbjct: 150 GGEPTVRRDIVPLMQQIGALRAHGLRELCLTTNG 183 >gi|283471488|emb|CAQ50699.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus ST398] Length = 309 Score = 34.6 bits (79), Expect = 9.9, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 K D++A + + G K+ R +TGGEPL++ D+ LI LN+ G E I + Sbjct: 14 PKNELLTFDEMARIAKVYAELGVKKIR---ITGGEPLMRRDLDVLIAKLNQIDGIEDIGL 70 Query: 117 ETNG 120 TNG Sbjct: 71 TTNG 74 >gi|253734322|ref|ZP_04868487.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus TCH130] gi|297209918|ref|ZP_06926314.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus ATCC 51811] gi|253727738|gb|EES96467.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus TCH130] gi|269941855|emb|CBI50265.1| putative molybdenum cofactor biosynthesisprotein A [Staphylococcus aureus subsp. aureus TW20] gi|296885591|gb|EFH24528.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus ATCC 51811] gi|302752141|gb|ADL66318.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus str. JKD6008] gi|320140193|gb|EFW32052.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus MRSA131] gi|320143463|gb|EFW35244.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus MRSA177] gi|323440051|gb|EGA97766.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus O11] gi|323443774|gb|EGB01387.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus O46] Length = 309 Score = 34.6 bits (79), Expect = 9.9, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 K D++A + + G K+ R +TGGEPL++ D+ LI LN+ G E I + Sbjct: 14 PKNELLTFDEMARIAKVYAELGVKKIR---ITGGEPLMRRDLDVLIAKLNQIDGIEDIGL 70 Query: 117 ETNG 120 TNG Sbjct: 71 TTNG 74 >gi|229099205|ref|ZP_04230137.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock3-29] gi|228684186|gb|EEL38132.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus Rock3-29] Length = 339 Score = 34.6 bits (79), Expect = 9.9, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 16/76 (21%) Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92 DR + +C +C D + ++ D++ L++ G ++ R LTG Sbjct: 24 DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLVKVFVSIGVRKIR---LTG 76 Query: 93 GEPLLQVDV-PLIQAL 107 GEPLL+ D+ LI L Sbjct: 77 GEPLLRKDLTKLIACL 92 >gi|297589663|ref|ZP_06948304.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus MN8] gi|297578174|gb|EFH96887.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus subsp. aureus MN8] Length = 309 Score = 34.6 bits (79), Expect = 9.9, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116 K D++A + + G K+ R +TGGEPL++ D+ LI LN+ G E I + Sbjct: 14 PKNELLTFDEMARIAKVYAELGVKKIR---ITGGEPLMRRDLDVLIAKLNQIDGIEDIGL 70 Query: 117 ETNG 120 TNG Sbjct: 71 TTNG 74 >gi|224419241|ref|ZP_03657247.1| molybdenum cofactor biosynthesis protein A [Helicobacter canadensis MIT 98-5491] gi|253826959|ref|ZP_04869844.1| molybdenum cofactor biosynthesis protein A [Helicobacter canadensis MIT 98-5491] gi|313142743|ref|ZP_07804936.1| molybdenum cofactor biosynthesis protein A [Helicobacter canadensis MIT 98-5491] gi|253510365|gb|EES89024.1| molybdenum cofactor biosynthesis protein A [Helicobacter canadensis MIT 98-5491] gi|313131774|gb|EFR49391.1| molybdenum cofactor biosynthesis protein A [Helicobacter canadensis MIT 98-5491] Length = 321 Score = 34.6 bits (79), Expect = 9.9, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 34/121 (28%) Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--- 97 +R + +C +C + G + ++ + + I+ G K+ R +TGGEPLL Sbjct: 19 ERCNFRCLYCMPNTPMDIGREEDDVPLESVLNFIKVVIDEGVKKIR---ITGGEPLLRRG 75 Query: 98 -----------------------QVDVPLIQALNKRGF-EIAVETNGTIEPPQGIDWICV 133 + PL++ L + G I + +++ + +C+ Sbjct: 76 IAGFIGEIYRYNPNIDIALTTNAYLLEPLVKDLKEAGLKRINI----SLDSLKKERIVCI 131 Query: 134 S 134 S Sbjct: 132 S 132 Database: nr Posted date: May 13, 2011 4:10 AM Number of letters in database: 999,999,932 Number of sequences in database: 2,987,209 Database: /data/usr2/db/fasta/nr.01 Posted date: May 13, 2011 4:17 AM Number of letters in database: 999,998,956 Number of sequences in database: 2,896,973 Database: /data/usr2/db/fasta/nr.02 Posted date: May 13, 2011 4:23 AM Number of letters in database: 999,999,979 Number of sequences in database: 2,907,862 Database: /data/usr2/db/fasta/nr.03 Posted date: May 13, 2011 4:29 AM Number of letters in database: 999,999,513 Number of sequences in database: 2,932,190 Database: /data/usr2/db/fasta/nr.04 Posted date: May 13, 2011 4:33 AM Number of letters in database: 792,586,372 Number of sequences in database: 2,260,650 Lambda K H 0.316 0.180 0.711 Lambda K H 0.267 0.0553 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,780,876,574 Number of Sequences: 13984884 Number of extensions: 223802880 Number of successful extensions: 533457 Number of sequences better than 10.0: 7032 Number of HSP's better than 10.0 without gapping: 2366 Number of HSP's successfully gapped in prelim test: 6226 Number of HSP's that attempted gapping in prelim test: 521814 Number of HSP's gapped (non-prelim): 9216 length of query: 211 length of database: 4,792,584,752 effective HSP length: 133 effective length of query: 78 effective length of database: 2,932,595,180 effective search space: 228742424040 effective search space used: 228742424040 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 79 (34.6 bits)