BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780202|ref|YP_003064615.1| hypothetical protein
CLIBASIA_00435 [Candidatus Liberibacter asiaticus str. psy62]
         (211 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done


Results from round 1


>gi|254780202|ref|YP_003064615.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039879|gb|ACT56675.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 211

 Score =  435 bits (1118), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/211 (100%), Positives = 211/211 (100%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT
Sbjct: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG
Sbjct: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF
Sbjct: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           LEENTNLAISYCFQNPKWRLSVQTHKFIGIR
Sbjct: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211


>gi|315122629|ref|YP_004063118.1| hypothetical protein CKC_04405 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496031|gb|ADR52630.1| hypothetical protein CKC_04405 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 211

 Score =  366 bits (939), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 172/211 (81%), Positives = 188/211 (89%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MKLYS+KEIFLTLQGEG   GRVAVFCRFSGCNLWSGRE+DRL AQCRFCDTDFVG +GT
Sbjct: 1   MKLYSVKEIFLTLQGEGAQVGRVAVFCRFSGCNLWSGREKDRLFAQCRFCDTDFVGTKGT 60

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
            GGRY+ +QLADLI   WI  EKE RYCVLTGGEPLLQVD  LI+ALNKR F I+VETNG
Sbjct: 61  MGGRYSAEQLADLIASAWIPEEKEERYCVLTGGEPLLQVDSALIKALNKRNFTISVETNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           TI+PP+GIDWICVSPKAGCDLK+K GQELKLVFPQV+  PENYI FDF+ FSLQPMDG F
Sbjct: 121 TIKPPEGIDWICVSPKAGCDLKVKNGQELKLVFPQVDAPPENYIDFDFDIFSLQPMDGSF 180

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           L+ENTNLAISYCF+NPKWR+S+QTHKFIGIR
Sbjct: 181 LKENTNLAISYCFKNPKWRVSLQTHKFIGIR 211


>gi|92118709|ref|YP_578438.1| hypothetical protein Nham_3243 [Nitrobacter hamburgensis X14]
 gi|91801603|gb|ABE63978.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 210

 Score =  306 bits (783), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 141/209 (67%), Positives = 164/209 (78%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG+ GT+GG
Sbjct: 3   YAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWSGREEDRTSAICRFCDTDFVGMDGTRGG 62

Query: 64  RYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY   D+LAD +  QW TG    RY VLTGGEPLLQVD   + AL+ RGFEI +ETNGTI
Sbjct: 63  RYAAADELADTVAAQW-TGSAPHRYAVLTGGEPLLQVDKAFVDALHARGFEIGIETNGTI 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
            PP GIDW+CVSPKAG DL++  G ELKLV+PQ    PE++    FERFSLQPMDGP   
Sbjct: 122 VPPDGIDWLCVSPKAGADLRVTKGHELKLVYPQAGARPEDFKDLAFERFSLQPMDGPDAA 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT  AI YC ++P+WRLS+QTHK +GIR
Sbjct: 182 DNTARAIDYCMRHPQWRLSLQTHKTLGIR 210


>gi|75676803|ref|YP_319224.1| hypothetical protein Nwi_2619 [Nitrobacter winogradskyi Nb-255]
 gi|74421673|gb|ABA05872.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 210

 Score =  305 bits (781), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 140/209 (66%), Positives = 163/209 (77%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR AVFCRFSGCNLWSGRE+DR SA CRFCDTDFVG  GT GG
Sbjct: 3   YAVKEIFLTLQGEGAHAGRAAVFCRFSGCNLWSGREEDRASATCRFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY + D LAD +  QW  G    RY VLTGGEPLLQVD   + AL+ RGFEI +ETNGT+
Sbjct: 63  RYASADALADTVAGQW-AGPAAHRYAVLTGGEPLLQVDKAFVDALHARGFEIGIETNGTL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
            PP GIDW+CVSPKAG DL+I+ G ELKLV+PQ +  PE++    F+RFSLQPMDGP   
Sbjct: 122 APPDGIDWLCVSPKAGADLRIRRGHELKLVYPQADARPEDFADLAFDRFSLQPMDGPDAA 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           ENT  A+ YC ++P+WRLS+QTHK +GIR
Sbjct: 182 ENTARAVDYCLRHPQWRLSLQTHKTLGIR 210


>gi|192289792|ref|YP_001990397.1| hypothetical protein Rpal_1382 [Rhodopseudomonas palustris TIE-1]
 gi|192283541|gb|ACE99921.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 210

 Score =  302 bits (773), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 139/209 (66%), Positives = 167/209 (79%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR AVFCRF+GCNLW+GREQDR  A C+FCDTDF+G  GT GG
Sbjct: 3   YAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWTGREQDRDQATCKFCDTDFIGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY + + LAD I EQW+ G+   RY V+TGGEPLLQ+D  LI AL+ RGF I VETNGTI
Sbjct: 63  RYASAEHLADTIAEQWV-GDARDRYVVITGGEPLLQLDGELITALHARGFAIGVETNGTI 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           EPP GIDW+CVSPKAG +L+I+ G ELKLV+PQ +  PE +   +FERFSLQPMDGP  +
Sbjct: 122 EPPAGIDWLCVSPKAGAELRIRRGDELKLVYPQPDAMPEEFAALEFERFSLQPMDGPDRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT  AI+YC ++P+WRLS+QTHK  GIR
Sbjct: 182 DNTTRAIAYCLKHPQWRLSLQTHKITGIR 210


>gi|85714274|ref|ZP_01045262.1| hypothetical protein NB311A_15022 [Nitrobacter sp. Nb-311A]
 gi|85698721|gb|EAQ36590.1| hypothetical protein NB311A_15022 [Nitrobacter sp. Nb-311A]
          Length = 210

 Score =  301 bits (771), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 142/209 (67%), Positives = 162/209 (77%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y+IKE+FLTLQGEG HAGR AVFCRFSGCNLWSGRE+DR SA C FCDTDFVG  GT GG
Sbjct: 3   YAIKEVFLTLQGEGAHAGRAAVFCRFSGCNLWSGREKDRASATCAFCDTDFVGTDGTLGG 62

Query: 64  RYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY+  D LA+ +  QWI G    RY VLTGGEPLLQVD   I AL+ R FEI +ETNGTI
Sbjct: 63  RYDTADALAETVAAQWI-GPAAHRYAVLTGGEPLLQVDKAFIDALHARRFEIGIETNGTI 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
            PP GIDW+CVSPKAG DL++  G ELKLV+PQ N+ PE++    FERFSLQPMDGP   
Sbjct: 122 VPPDGIDWLCVSPKAGADLRVTKGHELKLVYPQENIRPEDFKDLAFERFSLQPMDGPDAA 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT  AI YC ++P+WRLS+QTHK IGIR
Sbjct: 182 DNTARAIDYCLRHPQWRLSLQTHKTIGIR 210


>gi|39934265|ref|NP_946541.1| hypothetical protein RPA1190 [Rhodopseudomonas palustris CGA009]
 gi|39648113|emb|CAE26633.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
          Length = 210

 Score =  301 bits (771), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 139/209 (66%), Positives = 167/209 (79%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR AVFCRF+GCNLW+GREQDR  A C+FCDTDF+G  GT GG
Sbjct: 3   YAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWTGREQDRDQATCKFCDTDFIGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY + + LAD I EQW+ G+   RY V+TGGEPLLQ+D  LI AL+ RGF I VETNGTI
Sbjct: 63  RYASAEHLADTIAEQWV-GDARDRYVVITGGEPLLQLDGELITALHARGFAIGVETNGTI 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           EPP GIDW+CVSPKAG +L+I+ G ELKLV+PQ +  PE +   +FERFSLQPMDGP  +
Sbjct: 122 EPPVGIDWLCVSPKAGAELRIRRGDELKLVYPQPDAMPEEFAALEFERFSLQPMDGPERD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT  AI+YC ++P+WRLS+QTHK  GIR
Sbjct: 182 DNTTRAIAYCLKHPQWRLSLQTHKITGIR 210


>gi|91975780|ref|YP_568439.1| hypothetical protein RPD_1300 [Rhodopseudomonas palustris BisB5]
 gi|91682236|gb|ABE38538.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 210

 Score =  301 bits (771), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 142/209 (67%), Positives = 165/209 (78%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR +VFCRF+GCNLW+GREQDR  A CRFCDTDFVG  GT GG
Sbjct: 3   YAVKEIFLTLQGEGAHAGRASVFCRFAGCNLWTGREQDRDQAACRFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY +  +LA  I  QW   E + RY V+TGGEPLLQ+D  LI AL K+GF I VETNGTI
Sbjct: 63  RYTDAGELAGAIAAQWAGAELD-RYVVITGGEPLLQLDAELIAALQKQGFAIGVETNGTI 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           EPP GIDW+CVSPKAG +L++K G ELKLV+PQ    PE +   DFERFSLQPMDGP  +
Sbjct: 122 EPPPGIDWLCVSPKAGAELRVKRGNELKLVYPQPGAMPEQFAALDFERFSLQPMDGPARD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           E+T LAI+YC ++P+WRLSVQTHK IGIR
Sbjct: 182 EHTRLAIAYCLRHPQWRLSVQTHKTIGIR 210


>gi|316932735|ref|YP_004107717.1| Radical SAM domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315600449|gb|ADU42984.1| Radical SAM domain protein [Rhodopseudomonas palustris DX-1]
          Length = 210

 Score =  300 bits (768), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 141/209 (67%), Positives = 164/209 (78%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR AVFCRF+GCNLW+GREQDR  A C+FCDTDF+G  GT GG
Sbjct: 3   YAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWTGREQDRDEATCKFCDTDFIGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY   + LAD I EQW TG+   RY V+TGGEPLLQ+D  LI AL+ RGF I VETNGTI
Sbjct: 63  RYAGAELLADTIAEQW-TGDPRKRYVVITGGEPLLQLDGELIAALHTRGFAIGVETNGTI 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           EPP GIDW+CVSPKAG +L+I+ G ELKLV+PQ    PE +   DFERFSLQPMDGP  +
Sbjct: 122 EPPDGIDWLCVSPKAGAELRIRRGDELKLVYPQPGAMPEQFAALDFERFSLQPMDGPERD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT  AI+YC  +P+WRLS+QTHK  GIR
Sbjct: 182 DNTTRAIAYCLMHPQWRLSLQTHKITGIR 210


>gi|86748323|ref|YP_484819.1| hypothetical protein RPB_1198 [Rhodopseudomonas palustris HaA2]
 gi|86571351|gb|ABD05908.1| Radical SAM [Rhodopseudomonas palustris HaA2]
          Length = 210

 Score =  299 bits (765), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 139/209 (66%), Positives = 166/209 (79%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR +VFCRF+GCNLW+GREQDR  A C+FCDTDFVG  GT GG
Sbjct: 3   YAVKEIFLTLQGEGAHAGRASVFCRFAGCNLWTGREQDRHDAVCQFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY +  +LAD I  QW+ G    RY V+TGGEPLLQ+D  LI AL+K+GFE+ VETNGTI
Sbjct: 63  RYGDAGKLADTIAAQWV-GADTDRYVVITGGEPLLQLDAELIDALHKQGFEVGVETNGTI 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           EPP GIDW+CVSPKAG  ++++ G ELKLV+PQ +  PE +   DFERFSLQPMDGP  +
Sbjct: 122 EPPAGIDWLCVSPKAGTQIRVQCGNELKLVYPQPDAMPEQFTSLDFERFSLQPMDGPDRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT  AI YC ++P+WRLSVQTHK IGIR
Sbjct: 182 DNTRRAIDYCLRHPQWRLSVQTHKVIGIR 210


>gi|27377594|ref|NP_769123.1| hypothetical protein bll2483 [Bradyrhizobium japonicum USDA 110]
 gi|27350739|dbj|BAC47748.1| bll2483 [Bradyrhizobium japonicum USDA 110]
          Length = 210

 Score =  295 bits (756), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 140/209 (66%), Positives = 161/209 (77%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR +VFCRF+GCNLWSGRE DR  A C+FCDTDFVG  GT GG
Sbjct: 3   YAVKEIFLTLQGEGAHAGRASVFCRFAGCNLWSGREADRQDATCKFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY +  +LAD I  QW T   + RY VLTGGEPLLQVD  LI AL+ RGFEI VETNGTI
Sbjct: 63  RYASAVELADTIAAQW-TASNDNRYVVLTGGEPLLQVDDALIDALHARGFEIGVETNGTI 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P G+DWICVSPK G +L ++ G ELKLV+PQ   +PE + G  FERFSLQPMDGP + 
Sbjct: 122 AAPDGLDWICVSPKGGSELVLRRGHELKLVYPQALAAPETFEGLAFERFSLQPMDGPEVA 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           ENT  AI YC ++P+WRLSVQTHK +GIR
Sbjct: 182 ENTARAIDYCLRHPQWRLSVQTHKSLGIR 210


>gi|209886114|ref|YP_002289971.1| radical SAM [Oligotropha carboxidovorans OM5]
 gi|209874310|gb|ACI94106.1| radical SAM [Oligotropha carboxidovorans OM5]
          Length = 210

 Score =  292 bits (748), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 139/209 (66%), Positives = 158/209 (75%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR AVFCRF+GCNLW+GREQDR  A CRFCDTDFVG  GT GG
Sbjct: 3   YAVKEIFLTLQGEGAHAGRTAVFCRFAGCNLWTGREQDRADATCRFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY   D LAD I   W  G    R+ VLTGGEPLLQ+DV LI+AL+ R F IAVETNGT+
Sbjct: 63  RYATADALADQIAATWGEGTTH-RFVVLTGGEPLLQIDVELIEALHARHFMIAVETNGTL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P G+DWICVSPKA  +L I+ G ELKLV+PQ   +PE+Y    F  FSLQPMDGP L 
Sbjct: 122 PAPPGLDWICVSPKADTELAIRQGHELKLVYPQAENTPEDYAALAFAHFSLQPMDGPDLA 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT  AI YC ++P+WRLSVQTHK IGIR
Sbjct: 182 QNTERAIDYCLRHPQWRLSVQTHKTIGIR 210


>gi|115522971|ref|YP_779882.1| hypothetical protein RPE_0946 [Rhodopseudomonas palustris BisA53]
 gi|115516918|gb|ABJ04902.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
          Length = 210

 Score =  286 bits (731), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 136/209 (65%), Positives = 156/209 (74%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG  GT GG
Sbjct: 3   YAVKEIFLTLQGEGAHAGRAAVFCRFTGCNLWSGREDDRAAATCQFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY +   LA+ I  QW  G+   RY VLTGGEPLLQVD  LI+AL+ RGF I VETNGT 
Sbjct: 63  RYLSASDLAEAIAAQW-RGDAASRYVVLTGGEPLLQVDDALIEALHDRGFSIGVETNGTQ 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
            PP+ IDW+CVSPKAG +L ++ G ELKLV+PQ    PE +    FERFSLQPMDGP   
Sbjct: 122 MPPEDIDWVCVSPKAGTELTLRYGDELKLVYPQEGAEPELFEALAFERFSLQPMDGPDAA 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            N   AI YC  +P+WRLSVQTHK +GIR
Sbjct: 182 ANIQAAIDYCLSHPQWRLSVQTHKTLGIR 210


>gi|146339025|ref|YP_001204073.1| hypothetical protein BRADO1974 [Bradyrhizobium sp. ORS278]
 gi|146191831|emb|CAL75836.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
          Length = 210

 Score =  283 bits (723), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 131/208 (62%), Positives = 152/208 (73%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF+TLQGEG  AGR AVFCRF+GCNLWSGRE DR +A CRFCDTDFVG+ GT GG
Sbjct: 3   YAVKEIFMTLQGEGAQAGRAAVFCRFAGCNLWSGREADRATATCRFCDTDFVGVDGTLGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           RY              TG    RY +LTGGEPLLQVD  LI AL+ +GF + +ETNGT+ 
Sbjct: 63  RYETAAALAEAIAGQWTGGAADRYTILTGGEPLLQVDADLIAALHAQGFAVGIETNGTLI 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
           PP GIDWICVSPKAG +LK++ G ELKLV+PQ    P+ + G  FERFSLQPMDGP    
Sbjct: 123 PPDGIDWICVSPKAGAELKLRHGHELKLVYPQAGTEPDKFEGLAFERFSLQPMDGPDAAA 182

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           NT  AI YC + P+WRLS+QTHK IGIR
Sbjct: 183 NTARAIHYCQRRPQWRLSLQTHKMIGIR 210


>gi|154253588|ref|YP_001414412.1| hypothetical protein Plav_3149 [Parvibaculum lavamentivorans DS-1]
 gi|154157538|gb|ABS64755.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1]
          Length = 210

 Score =  283 bits (723), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 135/209 (64%), Positives = 155/209 (74%), Gaps = 1/209 (0%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +YS+KEIF TLQGEG +AGR +VFCRFSGCNLWSGRE+DR  A C FCDTDFVG  G  G
Sbjct: 1   MYSVKEIFYTLQGEGANAGRPSVFCRFSGCNLWSGREEDRADAVCTFCDTDFVGTNGEGG 60

Query: 63  GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           G++ +V  LAD IE+ W +G    R+ V TGGEPLLQ+D PLI AL+ RGFEIAVETNGT
Sbjct: 61  GKFRDVAALADAIEKTWESGAAHNRFVVCTGGEPLLQLDAPLIAALHSRGFEIAVETNGT 120

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           I  P+GIDWICVSPKA  +LK   G ELKLV+PQ    PE +   DF  F LQPMDG   
Sbjct: 121 IVAPEGIDWICVSPKADAELKQTSGHELKLVYPQHKAQPERFEQLDFRYFYLQPMDGADA 180

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           EENT  A +YC  +PKWRLS+QTHK IGI
Sbjct: 181 EENTRAATAYCLAHPKWRLSLQTHKLIGI 209


>gi|299134645|ref|ZP_07027837.1| Radical SAM domain protein [Afipia sp. 1NLS2]
 gi|298590455|gb|EFI50658.1| Radical SAM domain protein [Afipia sp. 1NLS2]
          Length = 210

 Score =  279 bits (714), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 135/209 (64%), Positives = 157/209 (75%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG  AGR AVFCRF+GCNLWSGREQDR  A C+FCDTDFVG  GT GG
Sbjct: 3   YAVKEIFLTLQGEGMQAGRPAVFCRFAGCNLWSGREQDRAEAVCQFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY   D LA+ I   W    +  R+ VLTGGEP+LQ+D  LI AL+ RGF IAVETNGT+
Sbjct: 63  RYATADDLAERIAATWGPDSRH-RFVVLTGGEPMLQIDDALIAALHARGFMIAVETNGTL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P G+DWICVSPKA  +L I+ G ELKLV+PQ   +PE+Y    F+ F LQPMDGP LE
Sbjct: 122 PAPPGLDWICVSPKADTELAIRQGHELKLVYPQRQNAPEDYTALAFQHFLLQPMDGPDLE 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT  AI YC ++P+WRLSVQTHK IGIR
Sbjct: 182 QNTARAIDYCLRHPQWRLSVQTHKTIGIR 210


>gi|311106693|ref|YP_003979546.1| radical SAM superfamily protein 3 [Achromobacter xylosoxidans A8]
 gi|310761382|gb|ADP16831.1| radical SAM superfamily protein 3 [Achromobacter xylosoxidans A8]
          Length = 226

 Score =  277 bits (709), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 128/208 (61%), Positives = 152/208 (73%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS KEIF TLQGEG HAGR AVFCRF+GCNLW+GRE DR SA C FCDTDF+G  G  GG
Sbjct: 19  YSAKEIFKTLQGEGAHAGRAAVFCRFAGCNLWTGRESDRASAACTFCDTDFIGTDGEGGG 78

Query: 64  RYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++   +L AD I   W  G  + RY V TGGEPLLQ+D PL+ A++ RGF IA+ETNGTI
Sbjct: 79  KFATPELLADAIAAAWGPGATD-RYVVFTGGEPLLQLDAPLLTAVHARGFTIAIETNGTI 137

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           +PP GIDWICVSPK    + ++ G ELKLV+PQ N  PE +   DF+ F LQPMDGP   
Sbjct: 138 KPPAGIDWICVSPKGTAPVVLERGDELKLVYPQANARPEAFAHLDFDHFFLQPMDGPARA 197

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT  A+ YC Q+P+WRLS+QTHK+IGI
Sbjct: 198 ANTEQAVQYCMQHPQWRLSLQTHKYIGI 225


>gi|16127389|ref|NP_421953.1| hypothetical protein CC_3159 [Caulobacter crescentus CB15]
 gi|221236197|ref|YP_002518634.1| queuosine biosynthesis protein QueE [Caulobacter crescentus NA1000]
 gi|13424829|gb|AAK25121.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220965370|gb|ACL96726.1| queuosine biosynthesis protein QueE [Caulobacter crescentus NA1000]
          Length = 210

 Score =  277 bits (709), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 132/208 (63%), Positives = 153/208 (73%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIFLTLQGEGG AG+ AVFCRFSGCNLWSGREQDR  A C FCDTDFVG  G  GG
Sbjct: 3   YSVKEIFLTLQGEGGQAGKAAVFCRFSGCNLWSGREQDRAKAVCTFCDTDFVGTDGENGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++   + LA  +E QW TG  + R  V TGGEP LQ+D   I AL+ RGF+IAVETNGTI
Sbjct: 63  KFATAEDLAAAVEAQW-TGGPDDRLVVCTGGEPFLQLDDAAIAALHARGFQIAVETNGTI 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P G+DWICVSPKA   +    GQELKLVFPQ    PE +   DFERF LQPMDGP  +
Sbjct: 122 TAPAGVDWICVSPKADAPVVQTSGQELKLVFPQEKAMPERFAALDFERFYLQPMDGPDRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LA++YC  +P+WRLSVQTHK++G+
Sbjct: 182 ANTQLAVAYCLSHPQWRLSVQTHKYLGL 209


>gi|148261740|ref|YP_001235867.1| organic radical activating-like protein [Acidiphilium cryptum JF-5]
 gi|146403421|gb|ABQ31948.1| Organic radical activating enzymes-like protein [Acidiphilium
           cryptum JF-5]
          Length = 211

 Score =  277 bits (708), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 130/208 (62%), Positives = 153/208 (73%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG  G  GG
Sbjct: 3   YSVKEIFPTLQGEGRNAGRAAVFCRFAGCNLWSGREEDRASATCRFCDTDFVGTDGPGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+ +   LA  I+  W          V TGGEPLLQ+D PLI+A++  GFEIAVETNGTI
Sbjct: 63  RFADAAGLARAIQAAWSAACTRDALVVFTGGEPLLQLDAPLIEAVHDAGFEIAVETNGTI 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           EPP GIDW+CVSPK G +L ++ G ELKLV+PQ   +PE + G DF  F LQPMDGP   
Sbjct: 123 EPPPGIDWLCVSPKEGAELVVRQGSELKLVYPQKEATPERFAGLDFAHFLLQPMDGPDRA 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT  AI YC  +P+WRLS+QTHK++GI
Sbjct: 183 ANTRAAIEYCLTHPQWRLSMQTHKYLGI 210


>gi|326405234|ref|YP_004285316.1| hypothetical protein ACMV_30870 [Acidiphilium multivorum AIU301]
 gi|325052096|dbj|BAJ82434.1| hypothetical protein ACMV_30870 [Acidiphilium multivorum AIU301]
          Length = 211

 Score =  276 bits (707), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 130/208 (62%), Positives = 152/208 (73%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG  G  GG
Sbjct: 3   YSVKEIFPTLQGEGRNAGRAAVFCRFAGCNLWSGREEDRASATCRFCDTDFVGTDGPGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+ +   LA  I+  W          V TGGEPLLQ+D PLI+A++  GFEIAVETNGTI
Sbjct: 63  RFADAAGLARAIQAAWPAACTRDALVVFTGGEPLLQLDAPLIEAVHDAGFEIAVETNGTI 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           EPP GIDW+CVSPK G +L ++ G ELKLV+PQ   +PE + G DF  F LQPMDGP   
Sbjct: 123 EPPPGIDWLCVSPKEGAELVVRQGSELKLVYPQKEATPERFAGLDFAHFLLQPMDGPDRA 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT  AI YC  +P+WRLS QTHK++GI
Sbjct: 183 ANTRAAIEYCLTHPQWRLSTQTHKYLGI 210


>gi|148253795|ref|YP_001238380.1| hypothetical protein BBta_2298 [Bradyrhizobium sp. BTAi1]
 gi|146405968|gb|ABQ34474.1| hypothetical protein BBta_2298 [Bradyrhizobium sp. BTAi1]
          Length = 210

 Score =  276 bits (705), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 130/208 (62%), Positives = 150/208 (72%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF+TLQGEG  AGR AVFCRF+GCNLWSGRE DR +A CRFCDTDFVG  GT GG
Sbjct: 3   YAVKEIFMTLQGEGALAGRAAVFCRFAGCNLWSGREADRATATCRFCDTDFVGTDGTFGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           RY+             TG    RY +LTGGEPLLQVD  LI AL+ R F + +ETNGT+ 
Sbjct: 63  RYDDAAALAAAIAGQWTGGAADRYTILTGGEPLLQVDADLIAALHARDFAVGIETNGTLI 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
           PP GIDWICVSPKAG +LK++ G ELKLV+PQ    PE +    F+RFSLQPMDGP    
Sbjct: 123 PPDGIDWICVSPKAGAELKLQQGHELKLVYPQDGAEPERFADLAFQRFSLQPMDGPEAAA 182

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           NT  AI YC  +P+WRLS+QTHK IGIR
Sbjct: 183 NTARAIQYCQHHPQWRLSLQTHKMIGIR 210


>gi|167645047|ref|YP_001682710.1| hypothetical protein Caul_1082 [Caulobacter sp. K31]
 gi|167347477|gb|ABZ70212.1| conserved hypothetical protein [Caulobacter sp. K31]
          Length = 210

 Score =  275 bits (704), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 132/208 (63%), Positives = 153/208 (73%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIFLTLQGEGG AG+ AVFCRF+GCNLW+GREQDR  A C FCDTDFVG  G  GG
Sbjct: 3   YSVKEIFLTLQGEGGQAGKAAVFCRFAGCNLWTGREQDRRKAVCAFCDTDFVGTDGEGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++   D L D +E  W TG    R  V TGGEPLLQ+D PLI A + RGF IAVETNGT+
Sbjct: 63  KFVTPDALVDAVEAAW-TGGPGDRLVVCTGGEPLLQLDAPLIAAFHARGFMIAVETNGTV 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+GIDWICVSPKA   +    GQELKLV+PQ    PE +   DFERF LQPMDGP  E
Sbjct: 122 AAPEGIDWICVSPKADAPVVQTRGQELKLVYPQDKALPERFAALDFERFYLQPMDGPDRE 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LA++YC  +P+WRLSVQTHK++G+
Sbjct: 182 RNTQLAVAYCLSHPQWRLSVQTHKYLGL 209


>gi|182679140|ref|YP_001833286.1| radical SAM domain-containing protein [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635023|gb|ACB95797.1| Radical SAM domain protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 211

 Score =  275 bits (703), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 133/211 (63%), Positives = 151/211 (71%), Gaps = 2/211 (0%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y++KEIFLTLQGEG  AGR AVFCRF+GCNLWSGRE DR  A CRFCDTDFVG+ G 
Sbjct: 1   MSHYAVKEIFLTLQGEGAQAGRPAVFCRFTGCNLWSGREADRAQAICRFCDTDFVGMDGL 60

Query: 61  KGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
            GGR+ +   LAD IE  W  G    RY V TGGEPLLQ+D  LI+ ++ RGF IAVETN
Sbjct: 61  GGGRFESASSLADAIETAWTAGPAH-RYVVFTGGEPLLQLDETLIKEIHARGFTIAVETN 119

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GTI PP G+DWICVSPKAG  LKI  G ELKLVFPQ  + PE +    F+ F LQPMD  
Sbjct: 120 GTIAPPPGLDWICVSPKAGAPLKITQGSELKLVFPQEALDPEEFRALSFQHFWLQPMDNA 179

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            L  NT  A +YC  +P+WRLS+QTHK IGI
Sbjct: 180 NLARNTTEATAYCLAHPQWRLSLQTHKLIGI 210


>gi|295688231|ref|YP_003591924.1| radical SAM domain-containing protein [Caulobacter segnis ATCC
           21756]
 gi|295430134|gb|ADG09306.1| Radical SAM domain protein [Caulobacter segnis ATCC 21756]
          Length = 210

 Score =  274 bits (700), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 131/208 (62%), Positives = 153/208 (73%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIFLTLQGEGG AG+ AVFCRFSGCNLWSGREQDR  A C FCDTDFVG  G  GG
Sbjct: 3   YSVKEIFLTLQGEGGQAGKAAVFCRFSGCNLWSGREQDRAKAVCTFCDTDFVGTDGENGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++   D LA  +E QW TG  + R  V TGGEP LQ+D   I AL+ RGF+IAVE+NGTI
Sbjct: 63  KFATADDLAAAVEAQW-TGGPDDRLVVCTGGEPFLQLDEAAIAALHARGFQIAVESNGTI 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           + P  IDWIC+SPKA   +    GQELKLVFPQ    PE +   DFERF LQPMDGP  +
Sbjct: 122 QAPPEIDWICISPKADAPVVQTSGQELKLVFPQEKAMPERFADLDFERFYLQPMDGPDRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LA++YC  +P+WRLSVQTHK++G+
Sbjct: 182 RNTQLAVAYCLSHPQWRLSVQTHKYLGL 209


>gi|103488122|ref|YP_617683.1| hypothetical protein Sala_2645 [Sphingopyxis alaskensis RB2256]
 gi|98978199|gb|ABF54350.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256]
          Length = 210

 Score =  274 bits (700), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 130/209 (62%), Positives = 154/209 (73%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG   GR AVFCRF+GCNLWSGRE DR ++ C FCDTDFVG+ G+ GG
Sbjct: 3   YAVKEIFKTLQGEGAQMGRAAVFCRFAGCNLWSGREGDRTTSVCTFCDTDFVGMDGSGGG 62

Query: 64  RYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+  DQ LAD IE +W  G +  RY VLTGGEPLLQVD  L+ AL+ RGFEIA+ETNGT 
Sbjct: 63  RFADDQALADAIESEW-AGARADRYVVLTGGEPLLQVDQDLVDALHTRGFEIAIETNGTQ 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+G+DWICVSPKA  +L +  G ELKLV+PQ   +PE +    FE F LQPMD P   
Sbjct: 122 PAPRGLDWICVSPKADAELVLLAGNELKLVYPQEKAAPERFEHLAFEHFFLQPMDSPTAA 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            N   AI+YC QNP+WRLS+Q+HK IGIR
Sbjct: 182 ANLEAAITYCTQNPRWRLSLQSHKMIGIR 210


>gi|90422441|ref|YP_530811.1| hypothetical protein RPC_0922 [Rhodopseudomonas palustris BisB18]
 gi|90104455|gb|ABD86492.1| Radical SAM [Rhodopseudomonas palustris BisB18]
          Length = 210

 Score =  273 bits (697), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 134/209 (64%), Positives = 160/209 (76%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR AVFCRF+GCNLWSGR+ DR +A+C+FCDTDFVG  GT G 
Sbjct: 3   YAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWSGRDSDRETAKCQFCDTDFVGTDGTLGD 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY +  +LA +I  QW TG+ + RY VLTGGEPLLQ+D  LI AL+ RGF + VETNGT+
Sbjct: 63  RYASAAELAAVIASQW-TGDDKFRYVVLTGGEPLLQLDAKLIAALHGRGFGVGVETNGTL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
            PP GIDW+CVSPKAG DL ++ G ELKLV+PQ    PE +    FERFSLQPMDG    
Sbjct: 122 APPDGIDWLCVSPKAGADLVLRRGNELKLVYPQRGALPELFADLGFERFSLQPMDGAEAA 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT  AI+YC  +P+WRLS+QTHK +GIR
Sbjct: 182 ANTASAIAYCLAHPQWRLSLQTHKTLGIR 210


>gi|302383449|ref|YP_003819272.1| hypothetical protein Bresu_2339 [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194077|gb|ADL01649.1| conserved hypothetical protein [Brevundimonas subvibrioides ATCC
           15264]
          Length = 211

 Score =  272 bits (695), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 128/209 (61%), Positives = 152/209 (72%), Gaps = 1/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KE FLT+QGEGG AGR AVF RF+GCNLWSGREQDR  A C FCDT+FVG  G  GG
Sbjct: 3   YSVKETFLTVQGEGGQAGRPAVFLRFAGCNLWSGREQDRAKAVCSFCDTEFVGTDGDGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ +   L+D +   WI  + + +  V TGGEPLLQ+D PLI+AL+ RGF+IAVETNGT+
Sbjct: 63  KFADAGVLSDHVASMWIGRDGDPKLVVCTGGEPLLQLDAPLIEALHARGFDIAVETNGTL 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDW+CVSPKA   +    GQELKLVFPQ    P  +   DFERF LQPMDGP   
Sbjct: 123 AAPTGIDWVCVSPKAAAPVVQTSGQELKLVFPQALAMPHRFEALDFERFWLQPMDGPDQA 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT  A+ YC +NPKWRLSVQTHK+IG+R
Sbjct: 183 ANTAAALDYCLKNPKWRLSVQTHKYIGVR 211


>gi|154247119|ref|YP_001418077.1| hypothetical protein Xaut_3190 [Xanthobacter autotrophicus Py2]
 gi|154161204|gb|ABS68420.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2]
          Length = 211

 Score =  271 bits (694), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 127/208 (61%), Positives = 150/208 (72%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE+FLTLQGEG  AGR AVFCRF+GCNLWSGRE DR  AQCRFCDTDFVG+ G  GG
Sbjct: 3   YAVKEMFLTLQGEGAQAGRAAVFCRFAGCNLWSGREDDRAEAQCRFCDTDFVGMDGEGGG 62

Query: 64  RYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+             W +   E R+ V TGGEPLLQ+D  L+ A++  GFEIAVETNGT+
Sbjct: 63  RFADAATLAAAIAATWGSAAPERRFVVFTGGEPLLQLDTALVDAVHALGFEIAVETNGTV 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           + P GIDWIC+SPKAG DLK+  G ELKLVFPQ  ++PE   G DF  F LQPMDGP   
Sbjct: 123 DAPGGIDWICMSPKAGTDLKVTRGHELKLVFPQPGLAPEGLAGLDFTHFFLQPMDGPDRL 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT  A++YC  +P+WRLS+QTHK IGI
Sbjct: 183 RNTEAAVAYCLSHPRWRLSLQTHKMIGI 210


>gi|293605772|ref|ZP_06688146.1| GntS protein [Achromobacter piechaudii ATCC 43553]
 gi|292815821|gb|EFF74928.1| GntS protein [Achromobacter piechaudii ATCC 43553]
          Length = 210

 Score =  271 bits (693), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 126/208 (60%), Positives = 150/208 (72%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y+ KEIF TLQGEG HAGR AVFCRF+GCNLW+GRE DR SA C FCDTDF+G  G  GG
Sbjct: 3   YTAKEIFKTLQGEGAHAGRAAVFCRFAGCNLWTGRESDRASAACTFCDTDFIGTDGEGGG 62

Query: 64  RYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++   D LAD I   W   + + RY V TGGEPLLQ+D PL+ A++ RGF +A+ETNGT+
Sbjct: 63  KFATPDLLADTIAATW-GPDTQDRYVVFTGGEPLLQLDAPLLTAIHARGFTVAIETNGTV 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           + P GIDWICVSPK    + I  G ELKLV+PQ N  PE +   DFE F LQPMDGP   
Sbjct: 122 KAPAGIDWICVSPKGTAPIVIDRGDELKLVYPQHNALPETFAHLDFEHFFLQPMDGPARV 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT  A+ YC Q+P+WRLS+QTHK+IGI
Sbjct: 182 ANTEQAVQYCMQHPQWRLSLQTHKYIGI 209


>gi|254418815|ref|ZP_05032539.1| hypothetical protein BBAL3_1125 [Brevundimonas sp. BAL3]
 gi|196184992|gb|EDX79968.1| hypothetical protein BBAL3_1125 [Brevundimonas sp. BAL3]
          Length = 211

 Score =  268 bits (686), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 130/209 (62%), Positives = 150/209 (71%), Gaps = 1/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS KE+FLT+QGEGG AGR AVF RF+GCNLWSGREQDR SA C FCDTDFVG  G  GG
Sbjct: 3   YSAKEVFLTVQGEGGQAGRPAVFLRFAGCNLWSGREQDRASAVCSFCDTDFVGTDGDGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++   D LAD +   W     + +  V TGGEPLLQ+D PLI AL+ R FEIA+E+NGT+
Sbjct: 63  KFATADLLADHVAAMWRGRAGDPKLVVCTGGEPLLQLDPPLIAALHARDFEIAIESNGTL 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDWICVSPKA  DL    GQELKLV+PQ    P+ +    FERF LQPMDGP   
Sbjct: 123 AAPDGIDWICVSPKADADLIQVKGQELKLVYPQAKALPDRFEHLAFERFWLQPMDGPDQA 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           ENT  AI YC  +P+WRLSVQTHK+IG+R
Sbjct: 183 ENTAAAIEYCLTHPQWRLSVQTHKYIGVR 211


>gi|162148726|ref|YP_001603187.1| hypothetical protein GDI_2954 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545507|ref|YP_002277736.1| hypothetical protein Gdia_3395 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787303|emb|CAP56897.1| conserved protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533184|gb|ACI53121.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 211

 Score =  268 bits (685), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 131/208 (62%), Positives = 155/208 (74%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y+IKE+F TLQGEG HAGR AVFCRF+GCNLWSGRE DR +A CRFCDTDFVG  GT GG
Sbjct: 3   YAIKEMFATLQGEGAHAGRAAVFCRFAGCNLWSGREADRATAVCRFCDTDFVGTDGTGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+ +   LAD I   W    +E  + V TGGEPLLQ+D  LI A+++RGFEIAVETNGT+
Sbjct: 63  RFADASSLADAIAATWEAPGREHAFVVFTGGEPLLQLDDALIGAVHERGFEIAVETNGTL 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P G+DWICVSPKAG DL  + G ELKLV+PQ ++ PE   G DF +F LQPMDGP   
Sbjct: 123 PVPPGVDWICVSPKAGADLVQRTGHELKLVYPQPDLLPERVAGLDFRQFWLQPMDGPAQA 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT  A++YC  +P+WRLS+QTHK IGI
Sbjct: 183 ANTAAAVAYCRAHPRWRLSLQTHKLIGI 210


>gi|220926506|ref|YP_002501808.1| radical SAM domain-containing protein [Methylobacterium nodulans
           ORS 2060]
 gi|219951113|gb|ACL61505.1| radical SAM domain-containing protein [Methylobacterium nodulans
           ORS 2060]
          Length = 210

 Score =  267 bits (682), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 124/207 (59%), Positives = 149/207 (71%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG  AGR AVFCRF+GCNLWSGRE DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEIFHTLQGEGAQAGRAAVFCRFAGCNLWSGREADRADAICRFCDTDFVGTDGEGGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R+   +           G ++GRY V TGGEPLLQ+D PL+ A++ RGF  AVETNGT +
Sbjct: 63  RFADAEALAAAIAAAWGGGRDGRYVVFTGGEPLLQLDAPLLAAVHARGFATAVETNGTQD 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
            P+G+DWICVSPKAG  L+I  G ELKLV+PQ  + PE+ +G DF  F LQPMDGP    
Sbjct: 123 APEGLDWICVSPKAGAPLRITRGDELKLVYPQAGLRPEDLVGLDFRHFWLQPMDGPDRLA 182

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
           NT  A++YC ++ +WRLS+QTHK IGI
Sbjct: 183 NTEAAVAYCLRDARWRLSLQTHKLIGI 209


>gi|330994295|ref|ZP_08318223.1| 7-carboxy-7-deazaguanine synthase-like protein [Gluconacetobacter
           sp. SXCC-1]
 gi|329758762|gb|EGG75278.1| 7-carboxy-7-deazaguanine synthase-like protein [Gluconacetobacter
           sp. SXCC-1]
          Length = 211

 Score =  266 bits (679), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 124/208 (59%), Positives = 148/208 (71%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG HAGR AVFCRF+GCNLWSG E+DR  A CRFCDTDF+G  G  GG
Sbjct: 3   YTVKEIFPTLQGEGAHAGRTAVFCRFTGCNLWSGLERDRARATCRFCDTDFIGTDGAGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+ +   LAD I   W   +++  + V TGGEPLLQ+D  LI A++ RGFEIAVETNGT+
Sbjct: 63  RFASASLLADAIAAHWPAPDRKAAFVVFTGGEPLLQLDDALITAVHARGFEIAVETNGTL 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDWICVSPKAG  L    G ELKLV+PQ ++ P    G DF +F LQPMD    +
Sbjct: 123 RAPGGIDWICVSPKAGAPLVQTSGHELKLVYPQPDLLPGQVAGLDFSQFWLQPMDNAARD 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT  A+ YC  +P+WRLS+QTHK IGI
Sbjct: 183 HNTRAAVDYCLHHPQWRLSLQTHKLIGI 210


>gi|158422696|ref|YP_001523988.1| hypothetical protein AZC_1072 [Azorhizobium caulinodans ORS 571]
 gi|158329585|dbj|BAF87070.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 212

 Score =  266 bits (679), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 128/209 (61%), Positives = 150/209 (71%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG  AGR AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG+ G  GG
Sbjct: 3   YAVKEIFKTLQGEGAQAGRAAVFCRFAGCNLWSGREEDRASAICRFCDTDFVGMDGEGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           R+ +   LA  I   W      GR Y V TGGEPLLQ+D  LI+A++  GFEIA+ETNGT
Sbjct: 63  RFADAPSLAATIARTWGEKGAGGRPYVVFTGGEPLLQLDAALIEAVHAEGFEIAIETNGT 122

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           +  P GIDWICVSPKAG ++  + G ELKLV+PQ  V PE   G  FE + LQPMDGP  
Sbjct: 123 LPAPAGIDWICVSPKAGAEIVQRTGSELKLVYPQPEVPPEAVAGLTFEHYFLQPMDGPAR 182

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            ENT   I+YC  +P+WRLS+QTHK  GI
Sbjct: 183 IENTQAVIAYCLAHPQWRLSLQTHKITGI 211


>gi|148554323|ref|YP_001261905.1| organic radical activating-like protein [Sphingomonas wittichii
           RW1]
 gi|148499513|gb|ABQ67767.1| Organic radical activating enzymes-like protein [Sphingomonas
           wittichii RW1]
          Length = 210

 Score =  265 bits (678), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 130/212 (61%), Positives = 152/212 (71%), Gaps = 3/212 (1%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y++KE+FLTLQGEG   GR AVF RF+GCNLWSGRE+DR  AQCRFCDTDFVG+ G 
Sbjct: 1   MAGYAVKEMFLTLQGEGVQVGRRAVFLRFAGCNLWSGREEDRADAQCRFCDTDFVGLDGD 60

Query: 61  KGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
            GGRY + D LAD     W  G+  G + V+TGGEPLLQVD  L+ AL  RGFE AVETN
Sbjct: 61  NGGRYPHADALADKAIALW--GDLAGAFIVMTGGEPLLQVDDALVAALKARGFETAVETN 118

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GT   P GIDWICVSPKAG D+ ++ G ELKLV+PQ  + P    G+DFE F LQPMDG 
Sbjct: 119 GTQPAPAGIDWICVSPKAGTDIVLRRGNELKLVWPQPGIDPAALEGWDFEHFLLQPMDGA 178

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            L+E    AI+Y   +P+WRLS QTHK +GIR
Sbjct: 179 QLDEARAAAIAYVMDHPRWRLSTQTHKVVGIR 210


>gi|94310513|ref|YP_583723.1| hypothetical protein Rmet_1571 [Cupriavidus metallidurans CH34]
 gi|93354365|gb|ABF08454.1| organic radical activating enzyme [Cupriavidus metallidurans CH34]
          Length = 211

 Score =  264 bits (674), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 124/209 (59%), Positives = 153/209 (73%), Gaps = 1/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRFSGCNLW+GRE+DR  A C+FCDTDFVG  GT GG
Sbjct: 3   YAVKEIFYTLQGEGANAGRAAVFCRFSGCNLWTGREEDRARAVCQFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +Y   D+LA ++  +W  G       V TGGEPLLQ+D PLI AL+ RGFEIA+ETNGTI
Sbjct: 63  KYKTADELAAVVAAEWPQGAGGKPLVVCTGGEPLLQLDAPLIGALHARGFEIAIETNGTI 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           E P+GIDW+CVSPK G +L +K G ELK+V PQ       Y   DF+ F +Q MDGP   
Sbjct: 123 EVPEGIDWVCVSPKMGSELVVKKGDELKVVIPQDGQDFAAYEQLDFQYFMVQAMDGPLAR 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT  A+ +C ++P+WRLS+QTHK +GIR
Sbjct: 183 QNTAAAVEFCQRHPRWRLSLQTHKLLGIR 211


>gi|124265719|ref|YP_001019723.1| hypothetical protein Mpe_A0526 [Methylibium petroleiphilum PM1]
 gi|124258494|gb|ABM93488.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 211

 Score =  263 bits (673), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 123/209 (58%), Positives = 152/209 (72%), Gaps = 1/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KE+F TLQGEG HAGR AVFCRF+GCNLWSGRE DR  A CRFCDT+FVG  GT GG
Sbjct: 3   YSVKEVFYTLQGEGSHAGRPAVFCRFAGCNLWSGREADRADAVCRFCDTEFVGTDGTGGG 62

Query: 64  RYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ + + LA  +   W  G+   R+ VLTGGEPLLQVD PLI AL+ + FEIAVETNG++
Sbjct: 63  KFTIAESLASHVAAHWPAGDAGPRFVVLTGGEPLLQVDAPLIDALHAQRFEIAVETNGSV 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDW+CVSPKAG  L  + GQELK+V PQ  +      G DF +  +QPMDGP L 
Sbjct: 123 PAPPGIDWLCVSPKAGAPLLQRSGQELKVVVPQGGIDLGELDGLDFAQRRVQPMDGPDLA 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT+ A+ +C  +P+W+LS+QTHK +GIR
Sbjct: 183 ANTDWAVRWCLAHPRWQLSLQTHKLLGIR 211


>gi|317404069|gb|EFV84524.1| hypothetical protein HMPREF0005_04153 [Achromobacter xylosoxidans
           C54]
          Length = 210

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 123/208 (59%), Positives = 150/208 (72%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y+ KEIF TLQGEG HAGR AVFCRF+GCNLW+GRE DR SA C FCDTDF+G  G  GG
Sbjct: 3   YTAKEIFKTLQGEGAHAGRAAVFCRFAGCNLWTGRESDRASAACTFCDTDFIGTDGDGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ + + LAD IE  W   +   RY V TGGEPLLQ+D  L+  ++ RGF +A+ETNGT+
Sbjct: 63  KFASPELLADAIEAAW-GPDTANRYIVFTGGEPLLQLDEALLAVVHARGFTVAIETNGTV 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           +PP GIDWICVSPK    + I+ G ELKLV+PQ N  P  +   DF+ F LQPMDGP   
Sbjct: 122 QPPPGIDWICVSPKGTAPVVIERGNELKLVYPQANALPPRFEHLDFDHFFLQPMDGPARL 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT  A+ YC Q+P+WRLS+QTHK+IGI
Sbjct: 182 ANTEQAVQYCMQHPQWRLSLQTHKYIGI 209


>gi|187478511|ref|YP_786535.1| hypothetical protein BAV2019 [Bordetella avium 197N]
 gi|115423097|emb|CAJ49628.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 210

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 126/208 (60%), Positives = 147/208 (70%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS KEIF TLQGEG  AGR AVFCRFSGCNLWSGRE DR +A C FCDTDFVG  G  GG
Sbjct: 3   YSAKEIFKTLQGEGAQAGRAAVFCRFSGCNLWSGRESDRAAAACTFCDTDFVGSDGEGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ +   LAD I   W   ++ GRY V TGGEPLLQ+D  LI A++ +GF IA+ETNGT+
Sbjct: 63  KFRDAQALADTIARTW-GPDRAGRYVVFTGGEPLLQLDEALIDAVHAQGFTIAIETNGTL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P G+DWICVSPK    +    GQELKLVFPQV   PE + G DFE F LQP+D P   
Sbjct: 122 PVPAGVDWICVSPKGRAPVVQTRGQELKLVFPQVEAPPEAFAGLDFEHFFLQPLDSPLRR 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +T  A+ YC  +P+WRLSVQTHK+IGI
Sbjct: 182 AHTEAAVQYCMAHPQWRLSVQTHKYIGI 209


>gi|73541537|ref|YP_296057.1| hypothetical protein Reut_A1848 [Ralstonia eutropha JMP134]
 gi|72118950|gb|AAZ61213.1| conserved hypothetical protein [Ralstonia eutropha JMP134]
          Length = 211

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/209 (58%), Positives = 155/209 (74%), Gaps = 1/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR +A C+FCDTDFVG  GT+GG
Sbjct: 3   YAVKEIFYTLQGEGANAGRAAVFCRFAGCNLWSGREEDRATAVCQFCDTDFVGTDGTRGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +Y   ++LA  +  +W  G       V TGGEPLLQ+D PLI AL+ +GFEIA+ETNGTI
Sbjct: 63  KYRTAEELAGAVASEWPQGAGGKPLVVCTGGEPLLQLDAPLIDALHAQGFEIAIETNGTI 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           + P GIDW+CVSPK G +L ++ G ELK+V PQV      Y   DF+ F +Q MDGP   
Sbjct: 123 KVPPGIDWVCVSPKMGSELVVRKGDELKVVIPQVGQDFAAYEQLDFQYFLVQAMDGPLAR 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           ENT  A+++C ++P+WRLS+QTHK +GIR
Sbjct: 183 ENTAAAVAFCQRHPRWRLSLQTHKLLGIR 211


>gi|197106204|ref|YP_002131581.1| hypothetical protein PHZ_c2743 [Phenylobacterium zucineum HLK1]
 gi|196479624|gb|ACG79152.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 241

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 130/207 (62%), Positives = 147/207 (71%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEGG AGR AVFCRF+GCNLWSGRE+DR  A C FCDTDFVG+ G  GG
Sbjct: 34  YAVKEIFLTLQGEGGQAGRPAVFCRFAGCNLWSGREEDREKAVCTFCDTDFVGMDGPGGG 93

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R+          E    G    R  VLTGGEPLLQVD  LI+AL+ RGF IA+ETNGT+ 
Sbjct: 94  RFADAAALAAAIEAQWAGGPNDRLVVLTGGEPLLQVDEALIEALHARGFSIALETNGTLP 153

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
            P GIDWICVSPKA   +    GQELKLVFPQ    PE +   DFERF LQPMDGP    
Sbjct: 154 VPPGIDWICVSPKADAPVVQTRGQELKLVFPQEKALPERFEHLDFERFLLQPMDGPDRAA 213

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
           NT  AI+YC  +P+WRLSVQTHK++GI
Sbjct: 214 NTRAAIAYCLAHPRWRLSVQTHKYLGI 240


>gi|134094603|ref|YP_001099678.1| hypothetical protein HEAR1379 [Herminiimonas arsenicoxydans]
          Length = 248

 Score =  261 bits (668), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 123/208 (59%), Positives = 149/208 (71%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YSIKEIF TLQGEG HAGR AVFCRFSGCNLW+GRE DR +A C+FCDTDFVG  G  GG
Sbjct: 40  YSIKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGRESDRATAVCQFCDTDFVGTDGEGGG 99

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ +  +LA+ I   W       +Y V TGGEPLLQ+D  LI A++  GFEIA+ETNGT+
Sbjct: 100 KFADAVKLANTINALWPASYAASKYVVFTGGEPLLQLDTELINAMHAVGFEIAIETNGTL 159

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P G+DWICVSPK G  L ++ G ELK+V PQ+  S   Y   DF+ F +QPMDGP  E
Sbjct: 160 PVPAGVDWICVSPKMGSQLVVRKGSELKVVIPQLAQSLAAYEDLDFQHFFVQPMDGPLAE 219

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +NT LAI  C +NPKW+LS+QTHK + I
Sbjct: 220 QNTRLAIEICKKNPKWKLSLQTHKLLQI 247


>gi|193222302|emb|CAL61551.2| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 211

 Score =  261 bits (668), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 123/208 (59%), Positives = 149/208 (71%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YSIKEIF TLQGEG HAGR AVFCRFSGCNLW+GRE DR +A C+FCDTDFVG  G  GG
Sbjct: 3   YSIKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGRESDRATAVCQFCDTDFVGTDGEGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ +  +LA+ I   W       +Y V TGGEPLLQ+D  LI A++  GFEIA+ETNGT+
Sbjct: 63  KFADAVKLANTINALWPASYAASKYVVFTGGEPLLQLDTELINAMHAVGFEIAIETNGTL 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P G+DWICVSPK G  L ++ G ELK+V PQ+  S   Y   DF+ F +QPMDGP  E
Sbjct: 123 PVPAGVDWICVSPKMGSQLVVRKGSELKVVIPQLAQSLAAYEDLDFQHFFVQPMDGPLAE 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +NT LAI  C +NPKW+LS+QTHK + I
Sbjct: 183 QNTRLAIEICKKNPKWKLSLQTHKLLQI 210


>gi|17546168|ref|NP_519570.1| hypothetical protein RSc1449 [Ralstonia solanacearum GMI1000]
 gi|17428464|emb|CAD15151.1| probable organic radical activating enzyme protein [Ralstonia
           solanacearum GMI1000]
          Length = 212

 Score =  261 bits (668), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 125/210 (59%), Positives = 148/210 (70%), Gaps = 2/210 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG  GT GG
Sbjct: 3   YAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRAAAICQFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVL-TGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           +Y   D LAD +  QW      GR  V+ TGGEPLLQ+D PLI AL+ RGFEIA+ETNGT
Sbjct: 63  KYPTADALADTVAAQWPAAATGGRPLVVCTGGEPLLQLDRPLIDALHARGFEIAIETNGT 122

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           +  P GIDW+CVSPK G +L +  G ELK+V PQ     + Y   DF  F LQPMDGP  
Sbjct: 123 LAVPDGIDWVCVSPKMGAELVVTRGDELKVVIPQPGQDLDAYERLDFRHFFLQPMDGPLA 182

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             NT LA+  C + P+W LS+QTHK +GIR
Sbjct: 183 RRNTALAVELCQRRPRWHLSLQTHKMLGIR 212


>gi|194289720|ref|YP_002005627.1| hypothetical protein RALTA_A1615 [Cupriavidus taiwanensis LMG
           19424]
 gi|193223555|emb|CAQ69560.1| conserved hypothetical protein, NrdG domain (Organic radical
           activating enzymes) [Cupriavidus taiwanensis LMG 19424]
          Length = 211

 Score =  261 bits (668), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 122/209 (58%), Positives = 151/209 (72%), Gaps = 1/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR SA C+FCDTDFVG  GT+GG
Sbjct: 3   YAVKEIFYTLQGEGANAGRAAVFCRFAGCNLWSGREEDRASAVCQFCDTDFVGTDGTRGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +Y    +LA ++  +W  G       V TGGEPLLQ+D PLI+AL+  GFEIA+ETNGTI
Sbjct: 63  KYRTAAELAAVVASEWPQGAGGKPLVVCTGGEPLLQLDAPLIEALHAHGFEIAIETNGTI 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDW+CVSPK G +L +  G ELK+V PQ       Y   DF  F +Q MDGP   
Sbjct: 123 AVPPGIDWVCVSPKMGSELVVTRGDELKVVIPQDGQDFAAYEKLDFRHFLVQAMDGPLAR 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           ENT  A+++C ++P+WRLS+QTHK +GIR
Sbjct: 183 ENTAAAVAFCQRHPRWRLSLQTHKLLGIR 211


>gi|113867905|ref|YP_726394.1| organic radical activating enzyme [Ralstonia eutropha H16]
 gi|113526681|emb|CAJ93026.1| organic radical activating enzyme [Ralstonia eutropha H16]
          Length = 211

 Score =  261 bits (666), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 122/209 (58%), Positives = 152/209 (72%), Gaps = 1/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR SA C+FCDTDFVG  GT+GG
Sbjct: 3   YAVKEIFYTLQGEGANAGRAAVFCRFAGCNLWSGREEDRASAVCQFCDTDFVGTDGTRGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +Y   ++LA ++  +W  G       V TGGEPLLQ+D PLI AL+ +GFEIA+ETNGTI
Sbjct: 63  KYRTAEELAAVVASEWPQGAGGQPLVVCTGGEPLLQLDAPLIDALHAQGFEIAIETNGTI 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDW+CVSPK G +L +  G ELK+V PQ       Y   DF  F +Q MDGP   
Sbjct: 123 AVPPGIDWVCVSPKMGSELVVTRGDELKVVIPQEGQDFAAYEQLDFRHFLVQAMDGPLAR 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           ENT  A+++C ++P+WRLS+QTHK +GIR
Sbjct: 183 ENTAAAVAFCQRHPRWRLSLQTHKLLGIR 211


>gi|300691566|ref|YP_003752561.1| hypothetical protein RPSI07_1920 [Ralstonia solanacearum PSI07]
 gi|299078626|emb|CBJ51283.1| conserved protein of unknown function (Organic radical activating
           enzymes) [Ralstonia solanacearum PSI07]
          Length = 212

 Score =  261 bits (666), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 124/210 (59%), Positives = 151/210 (71%), Gaps = 2/210 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG  GT+GG
Sbjct: 3   YAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAICQFCDTDFVGTDGTQGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVL-TGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           +Y   D LAD +  QW      G+  V+ TGGEPLLQ+D PLI AL+ RGFEIA+ETNGT
Sbjct: 63  KYPTADALADTVVAQWPADATGGQPLVVCTGGEPLLQLDRPLIDALHARGFEIAIETNGT 122

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           +  P GIDW+CVSPK G +L +  G ELK+V PQ +   + Y   DF  F LQPMDGP  
Sbjct: 123 LAVPDGIDWVCVSPKMGAELVVTRGDELKVVIPQQDQDLDAYERLDFRHFFLQPMDGPLA 182

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            +NT LA+  C + P+W LS+QTHK +GIR
Sbjct: 183 RQNTALAVDLCQRRPRWHLSLQTHKMLGIR 212


>gi|241662994|ref|YP_002981354.1| hypothetical protein Rpic12D_1394 [Ralstonia pickettii 12D]
 gi|309782087|ref|ZP_07676817.1| GntS [Ralstonia sp. 5_7_47FAA]
 gi|240865021|gb|ACS62682.1| conserved hypothetical protein [Ralstonia pickettii 12D]
 gi|308919153|gb|EFP64820.1| GntS [Ralstonia sp. 5_7_47FAA]
          Length = 212

 Score =  260 bits (665), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 123/210 (58%), Positives = 151/210 (71%), Gaps = 2/210 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG  GT+GG
Sbjct: 3   YAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAVCQFCDTDFVGTDGTQGG 62

Query: 64  RYN-VDQLADLIEEQWITGEKEGRYCVL-TGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           +Y   D LAD +  +W      G+  V+ TGGEPLLQ+D PLI AL+ RGFEIA+ETNGT
Sbjct: 63  KYTTADALADTVAAEWPASATGGKPLVICTGGEPLLQLDKPLIDALHARGFEIAIETNGT 122

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           I  P+GIDW+CVSPK G +L +  G ELK+V PQ     + Y   DF+ F LQ MDGP  
Sbjct: 123 ITVPEGIDWVCVSPKMGSELVVTRGDELKVVIPQDGQDLDAYERLDFQHFFLQAMDGPLA 182

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            +NT  A+  C + P+WRLS+QTHK +GIR
Sbjct: 183 RQNTAAAVELCQRRPRWRLSLQTHKMLGIR 212


>gi|326318538|ref|YP_004236210.1| Radical SAM domain-containing protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375374|gb|ADX47643.1| Radical SAM domain protein [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 212

 Score =  260 bits (665), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 130/210 (61%), Positives = 148/210 (70%), Gaps = 2/210 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIF TLQGEGG AG  AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG  GT GG
Sbjct: 3   YSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWSGREEDRSSAICRFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +Y   D LAD+I  QW   + + R  VLTGGEPLLQ+D PLI AL+ RG  IAVE+NGT+
Sbjct: 63  KYAQADALADVIAAQWPAHDADHRLVVLTGGEPLLQLDTPLIDALHARGMRIAVESNGTV 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS-PENYIGFDFERFSLQPMDGPFL 181
             P GIDW+CVSPKAG     + GQELKLV+PQ      E      FE   LQPMDGP  
Sbjct: 123 AAPPGIDWLCVSPKAGAPWVQRAGQELKLVWPQPGFDLAELENATRFEHRFLQPMDGPEQ 182

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             NT+L I+ C + P WRLS+QTHK  GIR
Sbjct: 183 AANTSLCIAACMERPAWRLSLQTHKLTGIR 212


>gi|260223401|emb|CBA33932.1| hypothetical protein Csp_B21500 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 225

 Score =  260 bits (665), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 126/209 (60%), Positives = 148/209 (70%), Gaps = 1/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +KEIF TLQGEG HAGR AVFCRF+GCNLWSGREQDR +A C+FCDTDFVG  GT GG
Sbjct: 17  YQVKEIFYTLQGEGSHAGRPAVFCRFAGCNLWSGREQDRATAVCKFCDTDFVGTDGTLGG 76

Query: 64  RYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +++  Q LA+ I  QW  G+   R+ V+TGGEPLLQVD  LI AL+  GF+IAVETNGT+
Sbjct: 77  KFSTAQALAERIAAQWPAGDTAHRFVVMTGGEPLLQVDTALIDALHALGFQIAVETNGTV 136

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+GIDWICVSPKAG     + G ELKLV+PQ  ++ E     DF+   LQPMD P   
Sbjct: 137 LVPEGIDWICVSPKAGSQWIQRQGHELKLVWPQAGITLEECEAADFKHRYLQPMDSPQRA 196

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            N    I+ C Q P WRLS+QTHK  GIR
Sbjct: 197 ANIETCITQCMQRPAWRLSLQTHKITGIR 225


>gi|217977590|ref|YP_002361737.1| radical SAM domain protein [Methylocella silvestris BL2]
 gi|217502966|gb|ACK50375.1| radical SAM domain protein [Methylocella silvestris BL2]
          Length = 211

 Score =  259 bits (663), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 125/211 (59%), Positives = 153/211 (72%), Gaps = 2/211 (0%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y++KEIF TLQGEG  AGR AVFCRF+GCNLWSGRE+DR +A C FCDTDF+G  G 
Sbjct: 1   MGRYAVKEIFPTLQGEGAQAGRAAVFCRFAGCNLWSGREKDRAAAACPFCDTDFIGTDGP 60

Query: 61  KGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
            GG +   ++LA  IE  W+ G   GRY V TGGEPLLQ+D  LI A++ RGFE AVETN
Sbjct: 61  GGGVFGGAEELAGAIEAAWLGGPA-GRYVVFTGGEPLLQLDDALIAAVHARGFEAAVETN 119

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GT+EPP G+DW+CVSPKAG  + +  G ELKLV+PQ ++ P+   G  F  F LQPMDG 
Sbjct: 120 GTLEPPAGVDWLCVSPKAGAPIVVTAGSELKLVYPQDDLLPDALSGLQFAHFWLQPMDGA 179

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            ++ NT  A++YC  +P WRLS+QTHK IGI
Sbjct: 180 NVDANTKAAVAYCLAHPDWRLSLQTHKLIGI 210


>gi|300704193|ref|YP_003745795.1| hypothetical protein RCFBP_11899 [Ralstonia solanacearum CFBP2957]
 gi|299071856|emb|CBJ43184.1| conserved protein of unknown function (Organic radical activating
           enzymes) [Ralstonia solanacearum CFBP2957]
          Length = 212

 Score =  259 bits (662), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 125/210 (59%), Positives = 148/210 (70%), Gaps = 2/210 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG  GT GG
Sbjct: 3   YAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRAAAVCQFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           +Y   D LAD +  QW      GR   V TGGEPLLQ+D  LI AL+ RGFEIAVETNGT
Sbjct: 63  KYPTADALADTVAAQWPADATGGRPLVVCTGGEPLLQLDRCLIDALHARGFEIAVETNGT 122

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           +  P+GIDW+CVSPK G +L +  G ELK+V PQ     + Y   DF  F LQPMDGP  
Sbjct: 123 VAVPEGIDWVCVSPKMGAELVVTRGDELKVVIPQSGQDLDAYERLDFRHFFLQPMDGPLA 182

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            +NT LA+  C + P+W LS+QTHK +GIR
Sbjct: 183 RQNTALAVELCQRRPRWHLSLQTHKMLGIR 212


>gi|120612485|ref|YP_972163.1| hypothetical protein Aave_3844 [Acidovorax citrulli AAC00-1]
 gi|120590949|gb|ABM34389.1| conserved hypothetical protein [Acidovorax citrulli AAC00-1]
          Length = 212

 Score =  259 bits (661), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 129/210 (61%), Positives = 147/210 (70%), Gaps = 2/210 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIF TLQGEGG AG  AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG  GT GG
Sbjct: 3   YSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWSGREEDRSSAVCRFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +Y   + LAD+I  QW   + + R  VLTGGEPLLQ+D PLI AL+ RG  IAVE+NGT+
Sbjct: 63  KYAQAEALADVIAAQWPAHDADHRLVVLTGGEPLLQLDTPLIDALHARGMRIAVESNGTV 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS-PENYIGFDFERFSLQPMDGPFL 181
             P GIDW+CVSPKAG     + GQELKLV+PQ      E      FE   LQPMDGP  
Sbjct: 123 AAPPGIDWLCVSPKAGAPWVQRAGQELKLVWPQPGFDLAELESATRFEHRFLQPMDGPDQ 182

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             NT L I+ C + P WRLS+QTHK  GIR
Sbjct: 183 AANTGLCIAACMERPAWRLSLQTHKLTGIR 212


>gi|58039977|ref|YP_191941.1| hypothetical protein GOX1543 [Gluconobacter oxydans 621H]
 gi|58002391|gb|AAW61285.1| Hypothetical protein GOX1543 [Gluconobacter oxydans 621H]
          Length = 213

 Score =  259 bits (661), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/210 (59%), Positives = 147/210 (70%), Gaps = 3/210 (1%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE+F+TLQGEG   GR +VFCRF+GCNLWSGREQDR +A C FCDTDF+G  G  GG
Sbjct: 3   YAVKEMFVTLQGEGAQTGRASVFCRFAGCNLWSGREQDRATAACSFCDTDFIGTDGEGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           R+   D LAD I   W +   E   RY V TGGEPLLQ+D  LI A+  RGFEIAVETNG
Sbjct: 63  RFETADALADTIAACWTSTADESGRRYVVFTGGEPLLQLDDALIAAVKARGFEIAVETNG 122

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           TI  P GIDW+CVSPK G  L    G ELKLV+PQ  + PE +    F  F LQPMDGP 
Sbjct: 123 TIAAPAGIDWVCVSPKPGGALVQTEGAELKLVYPQPELPPEMFEKLSFRHFWLQPMDGPD 182

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              NT  A+++C ++P+WRLS+QTHK IGI
Sbjct: 183 RIANTEAAVAHCLRHPRWRLSLQTHKLIGI 212


>gi|329113419|ref|ZP_08242200.1| 7-carboxy-7-deazaguanine synthase-like protein [Acetobacter pomorum
           DM001]
 gi|326697244|gb|EGE48904.1| 7-carboxy-7-deazaguanine synthase-like protein [Acetobacter pomorum
           DM001]
          Length = 216

 Score =  259 bits (661), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 127/216 (58%), Positives = 151/216 (69%), Gaps = 12/216 (5%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIFLTLQGEGG AGR AVFCRF+GCNLWSGRE+DR +A C+FCDTDF+G  G  GG
Sbjct: 3   YSVKEIFLTLQGEGGQAGRAAVFCRFTGCNLWSGREEDRATATCQFCDTDFIGTDGINGG 62

Query: 64  RY-NVDQLADLIEEQW--------ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
           ++ N   LA  I   W         TG+K     V TGGEPLLQ+D  LI A++ +GF I
Sbjct: 63  KFENAADLAATIASFWPQPTQDVKATGQK---LVVFTGGEPLLQLDTALINAMHAQGFTI 119

Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
           AVE+NGTI  P+GIDW+C+SPKAG +L  K G ELKLVFPQ  + P +    DF+ F LQ
Sbjct: 120 AVESNGTIAAPKGIDWLCISPKAGAELVQKAGTELKLVFPQPGIDPASVENLDFQHFWLQ 179

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           PMDGP    NT  AI YC ++P W LS+QTHK IGI
Sbjct: 180 PMDGPQQAANTQAAIEYCLEHPLWGLSLQTHKLIGI 215


>gi|187928417|ref|YP_001898904.1| hypothetical protein Rpic_1329 [Ralstonia pickettii 12J]
 gi|187725307|gb|ACD26472.1| conserved hypothetical protein [Ralstonia pickettii 12J]
          Length = 212

 Score =  259 bits (661), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 122/210 (58%), Positives = 151/210 (71%), Gaps = 2/210 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG  GT+GG
Sbjct: 3   YAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAVCQFCDTDFVGTDGTQGG 62

Query: 64  RYN-VDQLADLIEEQWITGEKEGRYCVL-TGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           +Y   + LAD +  +W      G+  V+ TGGEPLLQ+D PLI AL+ RGFEIA+ETNGT
Sbjct: 63  KYTTAEALADTVAAEWPASATGGKPLVICTGGEPLLQLDKPLIDALHARGFEIAIETNGT 122

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           I  P+GIDW+CVSPK G +L +  G ELK+V PQ     + Y   DF+ F LQ MDGP  
Sbjct: 123 IAVPEGIDWVCVSPKMGSELVVTRGDELKVVIPQDGQDLDAYERLDFQHFFLQAMDGPLA 182

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            +NT  A+  C + P+WRLS+QTHK +GIR
Sbjct: 183 RQNTAAAVELCQRRPRWRLSLQTHKMLGIR 212


>gi|152981565|ref|YP_001353700.1| organic radical activating enzyme [Janthinobacterium sp. Marseille]
 gi|151281642|gb|ABR90052.1| organic radical activating enzyme [Janthinobacterium sp. Marseille]
          Length = 211

 Score =  259 bits (661), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 122/208 (58%), Positives = 146/208 (70%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIF TLQGEG HAGR AVFCRFSGCNLW+GRE DR +A C+FCDTDFVG  G  GG
Sbjct: 3   YSVKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGRESDRATAVCQFCDTDFVGTNGEGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ +   LA  I   W       +Y V TGGEPLLQ+D  LI A++  GFEIA+ETNGT+
Sbjct: 63  KFVDGSTLAHTINALWPESYAASKYVVFTGGEPLLQLDTELIDAMHAVGFEIAIETNGTL 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P G+DWICVSPK G  L ++ G ELK+V PQ   S   Y   +FE F +QPMDGP  E
Sbjct: 123 PVPAGVDWICVSPKMGSQLVVRKGSELKVVIPQAEQSLAAYEALEFEHFFVQPMDGPLAE 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +NT LAI  C +NPKW+LS+QTHK + I
Sbjct: 183 QNTKLAIDVCKRNPKWKLSLQTHKLLQI 210


>gi|91787388|ref|YP_548340.1| hypothetical protein Bpro_1494 [Polaromonas sp. JS666]
 gi|91696613|gb|ABE43442.1| conserved hypothetical protein [Polaromonas sp. JS666]
          Length = 211

 Score =  258 bits (659), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 127/209 (60%), Positives = 146/209 (69%), Gaps = 1/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +KEIF TLQGEG +AGR AVFCRF+GCNLWSGREQDR +A C+FCDTDFVG  GT GG
Sbjct: 3   YQVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREQDRATAVCQFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ + D LA LIE QW   ++  R  V+TGGEPLLQVDV LI AL+ RGF+IAVETNGTI
Sbjct: 63  KFADADALARLIEAQWPADDRAHRLVVMTGGEPLLQVDVALIAALHARGFQIAVETNGTI 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDWICVSPKAG     + GQELK+V+PQ            F    LQPMD     
Sbjct: 123 AAPAGIDWICVSPKAGAPWIQREGQELKVVWPQAGFELAELEAARFTHRFLQPMDNARRA 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT   I+ C Q P WRLS+QTHK  GIR
Sbjct: 183 DNTQACIALCMQRPAWRLSLQTHKITGIR 211


>gi|160897280|ref|YP_001562862.1| hypothetical protein Daci_1837 [Delftia acidovorans SPH-1]
 gi|160362864|gb|ABX34477.1| conserved hypothetical protein [Delftia acidovorans SPH-1]
          Length = 212

 Score =  258 bits (658), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 125/210 (59%), Positives = 151/210 (71%), Gaps = 2/210 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIF TLQGEGG AG  A+FCRF+GCNLW+GREQDR SA C+FCDTDFVG  GT GG
Sbjct: 3   YSVKEIFYTLQGEGGQAGTPAIFCRFTGCNLWTGREQDRASAICQFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++   D LA+ I  QW  G+ + R  VLTGGEPLLQVD PLI AL+ RGF I+VE+NGT+
Sbjct: 63  KFATADALAERILSQWPAGDSQHRMVVLTGGEPLLQVDEPLIAALHARGFRISVESNGTV 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY-IGFDFERFSLQPMDGPFL 181
             P+GIDW+C+SPKAG +   + GQELKLV+PQ     +    G  F+R+ LQPMD    
Sbjct: 123 AAPEGIDWLCISPKAGAEWVQRSGQELKLVWPQPGFDLQAIEAGTRFDRYFLQPMDNVLQ 182

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            +NT   I+ C Q P WRLS+QTHK  GIR
Sbjct: 183 ADNTAACIAQCLQRPAWRLSLQTHKLTGIR 212


>gi|237748637|ref|ZP_04579117.1| organic radical activating enzyme [Oxalobacter formigenes OXCC13]
 gi|229379999|gb|EEO30090.1| organic radical activating enzyme [Oxalobacter formigenes OXCC13]
          Length = 219

 Score =  258 bits (658), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 122/208 (58%), Positives = 146/208 (70%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIF TLQGEG  +GR AVFCRFSGCNLWSGRE DR  + CRFCDTDFVG  G  GG
Sbjct: 11  YSVKEIFYTLQGEGARSGRPAVFCRFSGCNLWSGREADRSRSVCRFCDTDFVGTDGVNGG 70

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++   + L+  IE  W  G  E RY V TGGEPLLQ+D  LI A++ +GFEIA+ETNGT+
Sbjct: 71  KFAQAEDLSSFIESLWPAGFMENRYVVFTGGEPLLQLDAALIDAMHGKGFEIAIETNGTL 130

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDW+CVSPKAG DL + GG ELK+V PQ      +Y    F  F +QPMDG    
Sbjct: 131 AVPDGIDWVCVSPKAGADLAVAGGDELKVVVPQPGQILADYESLAFTHFYVQPMDGENRL 190

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +N  +AI  C QNPKW+LS+QTHK++ I
Sbjct: 191 QNVKIAIDTCLQNPKWKLSLQTHKYLQI 218


>gi|319795394|ref|YP_004157034.1| radical SAM protein [Variovorax paradoxus EPS]
 gi|315597857|gb|ADU38923.1| Radical SAM domain protein [Variovorax paradoxus EPS]
          Length = 212

 Score =  257 bits (657), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 128/210 (60%), Positives = 147/210 (70%), Gaps = 2/210 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIF TLQGEGG AG  AVFCRF+GCNLW+GRE+DR SA CRFCDTDFVG  GT GG
Sbjct: 3   YSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWTGREEDRASAVCRFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++   DQLAD I  QW   + E R  VLTGGEPLLQVD  L+ AL+ R F IAVE+NGT+
Sbjct: 63  KFKTADQLADTIAAQWPANDAEHRLVVLTGGEPLLQVDAALVDALHARRFRIAVESNGTV 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-DFERFSLQPMDGPFL 181
             P+GIDW+C+SPKAG     + GQELKLV+PQ     +      DF    LQPMDGP  
Sbjct: 123 AAPEGIDWLCISPKAGAPWVQQRGQELKLVWPQTAFDLDAMARTGDFTHRFLQPMDGPDR 182

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             NT L I+ C + P WRLSVQTHK  GIR
Sbjct: 183 VANTELCIAECMRQPAWRLSVQTHKITGIR 212


>gi|299067500|emb|CBJ38699.1| conserved protein of unknown function (Organic radical activating
           enzymes) [Ralstonia solanacearum CMR15]
          Length = 212

 Score =  257 bits (657), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 124/210 (59%), Positives = 148/210 (70%), Gaps = 2/210 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG  GT GG
Sbjct: 3   YAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAICQFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVL-TGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           +Y   D LAD +  QW      GR  V+ TGGEPLLQ+D  LI AL+ RGFEIA+ETNGT
Sbjct: 63  KYPTADALADTVAAQWPVAATGGRPLVVCTGGEPLLQLDRLLIDALHARGFEIAIETNGT 122

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           +  P GIDW+CVSPK G +L +  G ELK+V PQ     + Y   DF  F LQPMDGP  
Sbjct: 123 LAVPDGIDWVCVSPKLGAELVVTRGDELKVVIPQPGQDLDAYERLDFRHFFLQPMDGPLA 182

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            +NT LA+  C + P+W LS+QTHK +GIR
Sbjct: 183 RQNTALAVELCQRRPRWHLSLQTHKMLGIR 212


>gi|170748800|ref|YP_001755060.1| hypothetical protein Mrad2831_2382 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170655322|gb|ACB24377.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 210

 Score =  257 bits (657), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 120/207 (57%), Positives = 143/207 (69%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG  AGR AVFCRF+GCNLWSGRE DR +A CRFCDTDFVG+ G  GG
Sbjct: 3   YAVKEIFHTLQGEGAQAGRAAVFCRFAGCNLWSGREADRAAAACRFCDTDFVGMDGEGGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R+               G  E RY V TGGEPLLQ+D PLI+A++  GFEIA+ETNGT+ 
Sbjct: 63  RFADAASLADAIAATWAGGAENRYVVFTGGEPLLQLDTPLIEAVHAAGFEIAIETNGTLP 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
            P GIDWICVSPK    L    G ELKLV+PQ +  P  ++G  F+   LQPMDGP    
Sbjct: 123 APPGIDWICVSPKGSNALAQVSGHELKLVYPQADADPAAFVGLAFQHRFLQPMDGPDRAA 182

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +T  AI+YC ++ +WRLS+QTHK IGI
Sbjct: 183 STEAAIAYCRRDARWRLSLQTHKMIGI 209


>gi|86742064|ref|YP_482464.1| hypothetical protein Francci3_3380 [Frankia sp. CcI3]
 gi|86568926|gb|ABD12735.1| conserved hypothetical protein [Frankia sp. CcI3]
          Length = 212

 Score =  257 bits (656), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 122/211 (57%), Positives = 148/211 (70%), Gaps = 2/211 (0%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y IKEIF TLQGEG  +GR AVFCRF+ CNLW+GRE+DR  A C+FCDTDFVG  G  G
Sbjct: 2   VYRIKEIFYTLQGEGVRSGRPAVFCRFALCNLWTGRERDRHRAVCQFCDTDFVGTDGPDG 61

Query: 63  GRYNV-DQLADLIEEQWITGEKEG-RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           G ++  D LAD +  +W +       Y V TGGEPLLQ+D P + AL+ RGFE+AVETNG
Sbjct: 62  GVFDTPDDLADAVAARWPSDAPGALPYVVCTGGEPLLQLDTPAVSALHTRGFEVAVETNG 121

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T   P G+DW+CVSPKAG  L++  G ELKLVFPQ    PE + G +F    LQPMDGP 
Sbjct: 122 TCPAPAGLDWVCVSPKAGAPLRLTTGDELKLVFPQPGAGPELFAGLEFGHHLLQPMDGPH 181

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            E NT  A+ YC  +P+WRLS+QTHK +GIR
Sbjct: 182 REANTRAALDYCLAHPRWRLSIQTHKILGIR 212


>gi|121603954|ref|YP_981283.1| hypothetical protein Pnap_1045 [Polaromonas naphthalenivorans CJ2]
 gi|120592923|gb|ABM36362.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]
          Length = 211

 Score =  257 bits (656), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 126/209 (60%), Positives = 144/209 (68%), Gaps = 1/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +KEIF TLQGEG HAGR A+FCRF+GCNLWSGRE DR +A CRFCDTDFVG  GT GG
Sbjct: 3   YQVKEIFYTLQGEGSHAGRPAIFCRFAGCNLWSGREPDRATAVCRFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ N + LA  IE QW  G+   R+ V+TGGEPLLQVD  LI AL+ RGF IAVETNGTI
Sbjct: 63  KFKNAEALAGCIEAQWPAGDSAHRFVVMTGGEPLLQVDGALIAALHARGFVIAVETNGTI 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDWICVSPKAG     + G ELK+V+PQ  +         F    LQPMD P   
Sbjct: 123 AAPPGIDWICVSPKAGAPWIQREGHELKVVWPQPALDWAELEAARFTHRYLQPMDNPAWR 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT   I+ C +NP WRLS+QTHK  GIR
Sbjct: 183 NNTEACIALCLENPAWRLSLQTHKITGIR 211


>gi|302558410|ref|ZP_07310752.1| GntS family protein [Streptomyces griseoflavus Tu4000]
 gi|302476028|gb|EFL39121.1| GntS family protein [Streptomyces griseoflavus Tu4000]
          Length = 213

 Score =  256 bits (655), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 120/209 (57%), Positives = 147/209 (70%), Gaps = 1/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y IKEIF TLQGEG HAGR AVFCRFS CNLW+GRE DR  A C+FCDTDFVG  G  GG
Sbjct: 5   YLIKEIFYTLQGEGSHAGRPAVFCRFSRCNLWTGREADRSRAICQFCDTDFVGTDGEGGG 64

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+   + LAD +E  W + ++  R+ V TGGEPLLQ+D   I AL+ RGFE+AVETNGT 
Sbjct: 65  RFRTAEDLADAVEAAWPSTDRAHRFVVCTGGEPLLQLDEDAIAALHARGFEVAVETNGTR 124

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDW+CVSPK G  L +  G ELKLV+PQ    P  + G DF+   LQP+D    E
Sbjct: 125 PAPHGIDWLCVSPKIGSQLVLTSGDELKLVYPQAGGDPAQFEGLDFQHLRLQPLDDANRE 184

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           ++T  A+ YC +NP+W LS+QTHK++GI+
Sbjct: 185 DHTRAAVEYCMKNPRWTLSLQTHKYLGIQ 213


>gi|296445573|ref|ZP_06887529.1| Radical SAM domain protein [Methylosinus trichosporium OB3b]
 gi|296256978|gb|EFH04049.1| Radical SAM domain protein [Methylosinus trichosporium OB3b]
          Length = 210

 Score =  256 bits (654), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 121/208 (58%), Positives = 141/208 (67%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE F TLQGEG H GR AVFCRF+GCNLWSGRE DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEAFKTLQGEGRHVGRAAVFCRFAGCNLWSGREIDRAEAVCRFCDTDFVGTNGEGGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R+               GE+E R+ VLTGGEP+LQ+D  L+ AL+  GFEIA+ETNGT  
Sbjct: 63  RFETAAALAAHLAGLWGGERERRFVVLTGGEPMLQIDAALVDALHDAGFEIAIETNGTRA 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
            P  IDWICVSPKAG  L    G ELKLV+PQ    PE + G  F+ F LQPMDGP   +
Sbjct: 123 APSEIDWICVSPKAGAPLVQSSGDELKLVYPQPGAEPELFEGLAFDHFLLQPMDGPEAAQ 182

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           NT  A+ YC  +P+WR S+QTHK IG+R
Sbjct: 183 NTRAAVDYCLAHPRWRFSLQTHKTIGVR 210


>gi|209515825|ref|ZP_03264687.1| Radical SAM domain protein [Burkholderia sp. H160]
 gi|209503673|gb|EEA03667.1| Radical SAM domain protein [Burkholderia sp. H160]
          Length = 210

 Score =  256 bits (654), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 124/208 (59%), Positives = 151/208 (72%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62

Query: 64  RYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +Y   D+L  +I  QW  GE E R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG++
Sbjct: 63  KYRTPDELVAMIASQWPQGEGE-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
                IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP  +
Sbjct: 122 PVLDTIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPSRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++PKWRLS+QTHK++ I
Sbjct: 182 LNTKLAIDWCKRHPKWRLSMQTHKYLNI 209


>gi|224824585|ref|ZP_03697692.1| conserved hypothetical protein [Lutiella nitroferrum 2002]
 gi|224603078|gb|EEG09254.1| conserved hypothetical protein [Lutiella nitroferrum 2002]
          Length = 209

 Score =  256 bits (654), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 126/210 (60%), Positives = 150/210 (71%), Gaps = 2/210 (0%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y++KEIF TLQGEG  AGR AVFCRF+GCNLWSG+E+ R  A C+FCDTDFVG  G  G
Sbjct: 1   MYTVKEIFYTLQGEGRQAGRAAVFCRFAGCNLWSGKERHRAKAICQFCDTDFVGT-GPDG 59

Query: 63  GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           G++   +QLA+ I   W  G     + V TGGEPLLQ+D PLI AL+ RGFEIAVETNGT
Sbjct: 60  GKFKTAEQLAERIAGAWPAGAGGTPFVVCTGGEPLLQLDAPLIDALHARGFEIAVETNGT 119

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           +  P GIDW+CVSPKAG  L    G ELKLV+PQ  + PE+  G  F+ F LQPMDGP +
Sbjct: 120 VAAPPGIDWLCVSPKAGAPLLQTSGHELKLVYPQPTLMPESVAGLAFQNFYLQPMDGPDV 179

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             NT  AI+YC   P+WRLSVQTHK + IR
Sbjct: 180 AANTRAAIAYCMAQPQWRLSVQTHKVLNIR 209


>gi|329889514|ref|ZP_08267857.1| radical SAM domain-containing protein [Brevundimonas diminuta ATCC
           11568]
 gi|328844815|gb|EGF94379.1| radical SAM domain-containing protein [Brevundimonas diminuta ATCC
           11568]
          Length = 211

 Score =  256 bits (653), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/209 (57%), Positives = 150/209 (71%), Gaps = 1/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS KE+FLT+QGEGG AGR AVF RF+GCNLWSG E+DR +A C FCDTDFVG+ G  GG
Sbjct: 3   YSAKEVFLTVQGEGGQAGRPAVFLRFAGCNLWSGLERDRATAICTFCDTDFVGVNGDGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++   D +AD +   W   E + +  V TGGEPL+Q+D  LI AL+ RGFEIA+E+NGT+
Sbjct: 63  KFKTADLMADHVAGMWRGREGDPKLVVCTGGEPLMQLDTLLIDALHARGFEIAIESNGTL 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+GIDWIC+SPKA   +    GQELKLV+PQ    P+ +   DF+ F LQPMDGP   
Sbjct: 123 VAPEGIDWICISPKADAPVVQTSGQELKLVYPQPLAMPDRFESLDFQHFWLQPMDGPDQA 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT  AI YC  +P+WRLSVQTHK+IG+R
Sbjct: 183 ANTAAAIEYCLTHPQWRLSVQTHKYIGVR 211


>gi|34498964|ref|NP_903179.1| hypothetical protein CV_3509 [Chromobacterium violaceum ATCC 12472]
 gi|34104813|gb|AAQ61170.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 211

 Score =  255 bits (652), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 128/212 (60%), Positives = 149/212 (70%), Gaps = 2/212 (0%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y++KEIF TLQGEG  AGR AVFCRF+GCNLWSGRE+DR  A C+FCDTDFVG  G 
Sbjct: 1   MTTYTVKEIFYTLQGEGRQAGRAAVFCRFAGCNLWSGREEDRAKAVCQFCDTDFVGA-GP 59

Query: 61  KGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
            GG+++    LA  I  +W        Y V TGGEPLLQ+D  LI AL+ +GFEIAVETN
Sbjct: 60  DGGKFDGAAALAARIAAEWPKDAGGSPYVVCTGGEPLLQLDAELIGALHAQGFEIAVETN 119

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GT+  P G+DWICVSPKAG +LK + G ELKLV+PQ    PE     DF  F LQPMDGP
Sbjct: 120 GTVAAPAGLDWICVSPKAGAELKQRAGDELKLVYPQAAQMPETVADLDFGTFYLQPMDGP 179

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            L  NT  AI+YC  +P+WRLSVQTHK + IR
Sbjct: 180 ELAANTRAAIAYCMAHPQWRLSVQTHKVVDIR 211


>gi|295675134|ref|YP_003603658.1| Radical SAM domain protein [Burkholderia sp. CCGE1002]
 gi|295434977|gb|ADG14147.1| Radical SAM domain protein [Burkholderia sp. CCGE1002]
          Length = 210

 Score =  255 bits (652), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 123/208 (59%), Positives = 151/208 (72%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62

Query: 64  RYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +Y   D+L  +I  QW  GE E R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG++
Sbjct: 63  KYRTPDELVAMIASQWPQGEGE-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
                IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP  +
Sbjct: 122 PVLDTIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPSRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 INTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|284028807|ref|YP_003378738.1| hypothetical protein Kfla_0827 [Kribbella flavida DSM 17836]
 gi|283808100|gb|ADB29939.1| conserved hypothetical protein [Kribbella flavida DSM 17836]
          Length = 211

 Score =  255 bits (651), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 116/208 (55%), Positives = 149/208 (71%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +KEIF TLQGEG HAGR AVFCRF+ CNLW+GRE+DR  A C FCDTDFVG  G  GG
Sbjct: 3   YKVKEIFYTLQGEGSHAGRPAVFCRFASCNLWTGREKDRARAICSFCDTDFVGTDGPGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ + + LA  +E+ W     + R  V TGGEPLLQ+D   + AL++RGF +AVETNGT 
Sbjct: 63  KFASAEDLARAVEDAWPHDGHDQRMVVCTGGEPLLQLDADAVSALHERGFYVAVETNGTQ 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
            PPQG+DW+CVSPK G +L +  G ELKLV+PQ    P  +   +FE F LQPMD P  +
Sbjct: 123 IPPQGLDWLCVSPKIGAELIVTSGDELKLVYPQAGGDPAQFEHLEFEHFRLQPMDSPDRQ 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +NT  A+ YC ++P+W+LS+QTHK++GI
Sbjct: 183 QNTAAAVEYCLKHPRWQLSLQTHKYLGI 210


>gi|13474945|ref|NP_106515.1| hypothetical protein msl8680 [Mesorhizobium loti MAFF303099]
 gi|14025701|dbj|BAB52301.1| msl8680 [Mesorhizobium loti MAFF303099]
          Length = 211

 Score =  254 bits (650), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 123/208 (59%), Positives = 148/208 (71%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE DR  A C FCDTDFVG+ G  G 
Sbjct: 3   YAVKEIFYTLQGEGRNAGRAAVFCRFAGCNLWSGREGDRAKAFCGFCDTDFVGVDGPGGR 62

Query: 64  RYNVD-QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
            ++   QLA  +E+ W       R+ VLTGGEPLLQ+D  L++AL+   FEIAVETNGTI
Sbjct: 63  HFDTARQLALAVEQAWRGQGAGQRFVVLTGGEPLLQIDEELLEALHCLAFEIAVETNGTI 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDW+CVSPK    L +  G ELKLV+PQ+   PE++    FE   LQPMDGP  E
Sbjct: 123 PTPAGIDWLCVSPKCNARLVVMAGDELKLVYPQIGAEPEHFEVLAFEHLLLQPMDGPERE 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT  A++YC  NP+WRLS+QTHKF+GI
Sbjct: 183 ANTAAAVAYCLANPRWRLSLQTHKFLGI 210


>gi|83859604|ref|ZP_00953124.1| hypothetical protein OA2633_06384 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851963|gb|EAP89817.1| hypothetical protein OA2633_06384 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 209

 Score =  254 bits (650), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 122/208 (58%), Positives = 151/208 (72%), Gaps = 3/208 (1%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KE+FLT+QGEGG  GR AVF RF+GCNLWSG E+DR SA C+FCDTDFVG+ G  GG
Sbjct: 3   YSVKEMFLTVQGEGGQTGRPAVFLRFAGCNLWSGLERDRASAICQFCDTDFVGVDGVNGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++   + LAD +   W  G +   Y V TGGEPLLQ+D PLI AL++ GF IAVETNGTI
Sbjct: 63  KFKTAEALADKVASLWPGGGEP--YVVCTGGEPLLQLDAPLIDALHEAGFRIAVETNGTI 120

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           + P+GIDW+CVSPK+   LK   G ELKLV+PQ    PE + G DF++F LQPMDGP   
Sbjct: 121 KAPEGIDWVCVSPKSTAPLKQTSGDELKLVYPQPEAMPELFSGLDFKQFRLQPMDGPDQM 180

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +N   A  YC Q+P+W LS+QTHK+I +
Sbjct: 181 KNAQAAFEYCLQHPQWMLSLQTHKWINV 208


>gi|288942462|ref|YP_003444702.1| radical SAM domain-containing protein [Allochromatium vinosum DSM
           180]
 gi|288897834|gb|ADC63670.1| radical SAM domain-containing protein [Allochromatium vinosum DSM
           180]
          Length = 215

 Score =  254 bits (649), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 127/212 (59%), Positives = 146/212 (68%), Gaps = 5/212 (2%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +KE F TLQGEG  AGR AVFCRFSGCNLWSGREQDR  A CRFCDTDF G  G  GG
Sbjct: 3   YWVKESFYTLQGEGAQAGRAAVFCRFSGCNLWSGREQDRDRAICRFCDTDFRGTDGEGGG 62

Query: 64  RY-NVDQLADLIEEQWITGE----KEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
           RY + D LA+ +   W TG      +  Y V TGGEPLLQ+D PLI AL+  GFE+AVET
Sbjct: 63  RYRDADVLAEHLRALWPTGAGADASDRPYVVCTGGEPLLQLDAPLIDALHGSGFEVAVET 122

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
           NGT   P G+DWICVSPKAG    +  G ELKL++PQ  + PE + G  F  F LQPMDG
Sbjct: 123 NGTRPAPPGLDWICVSPKAGATTVLIEGDELKLIYPQPGLEPERFEGLGFRHFFLQPMDG 182

Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P    NT LA+ YC   P+WRLS+QTHK++GI
Sbjct: 183 PQSNANTRLAVDYCKARPRWRLSLQTHKWLGI 214


>gi|237745834|ref|ZP_04576314.1| organic radical activating enzyme [Oxalobacter formigenes HOxBLS]
 gi|229377185|gb|EEO27276.1| organic radical activating enzyme [Oxalobacter formigenes HOxBLS]
          Length = 234

 Score =  254 bits (649), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 120/208 (57%), Positives = 146/208 (70%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIF TLQGEG   GR AVFCRFSGCNLWSGREQDR  A CRFCDTDFVG  G +GG
Sbjct: 26  YSVKEIFYTLQGEGARTGRPAVFCRFSGCNLWSGREQDRARAICRFCDTDFVGTSGERGG 85

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++   ++LA +I   W     E RY V TGGEPLLQ+D PLI  +++ GFEIA+ETNGTI
Sbjct: 86  KFPEAEKLASVIISLWPREHAENRYVVFTGGEPLLQLDRPLIGIMHRAGFEIAIETNGTI 145

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+G+DW+CVSPK G  L +K G ELK+V PQ   +  +Y    F  F +QPMDG   E
Sbjct: 146 PVPEGVDWVCVSPKVGSTLVVKSGDELKVVIPQAGQNLADYEDLSFSHFYVQPMDGENRE 205

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            N  +AI  C +NPKW+L +QTHK++ I
Sbjct: 206 RNIKMAIDTCLKNPKWKLGLQTHKYLQI 233


>gi|323524432|ref|YP_004226585.1| Radical SAM domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323381434|gb|ADX53525.1| Radical SAM domain protein [Burkholderia sp. CCGE1001]
          Length = 210

 Score =  254 bits (649), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 121/208 (58%), Positives = 152/208 (73%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62

Query: 64  RYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +Y   ++L  +I  QW  GE + R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG++
Sbjct: 63  KYRTPEELVQMIASQWPEGEGQ-RFVVCTGGEPMLQIDAPLVDALHAAGFEIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
              + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP  +
Sbjct: 122 PVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSDYAKLDFEYFLVQPMDGPSRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 INTRLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|91781440|ref|YP_556646.1| hypothetical protein Bxe_A4406 [Burkholderia xenovorans LB400]
 gi|91685394|gb|ABE28594.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 210

 Score =  254 bits (649), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 123/208 (59%), Positives = 150/208 (72%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +Y   + L  +I  QW  GE E R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG++
Sbjct: 63  KYRTAEDLVRMIASQWPQGEGE-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
              + IDWICVSPKA   L +  G ELK+V PQ N     Y   DFE F +QPMDGP  E
Sbjct: 122 PVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSEYAKLDFEYFLVQPMDGPSRE 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 INTRLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|296161371|ref|ZP_06844178.1| Radical SAM domain protein [Burkholderia sp. Ch1-1]
 gi|295888357|gb|EFG68168.1| Radical SAM domain protein [Burkholderia sp. Ch1-1]
          Length = 210

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 122/208 (58%), Positives = 150/208 (72%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +Y   + L  +I  QW  GE E R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG++
Sbjct: 63  KYRTAEDLVRMIASQWPQGEGE-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
              + IDWICVSPKA   L +  G ELK+V PQ N     Y   DFE F +QPMDGP  +
Sbjct: 122 PVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSEYAKLDFEYFLVQPMDGPSRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 INTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|258542252|ref|YP_003187685.1| hypothetical protein APA01_11580 [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633330|dbj|BAH99305.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01]
 gi|256636389|dbj|BAI02358.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03]
 gi|256639442|dbj|BAI05404.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07]
 gi|256642498|dbj|BAI08453.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22]
 gi|256645553|dbj|BAI11501.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26]
 gi|256648606|dbj|BAI14547.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32]
 gi|256651659|dbj|BAI17593.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654650|dbj|BAI20577.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12]
          Length = 216

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 126/216 (58%), Positives = 148/216 (68%), Gaps = 12/216 (5%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIFLTLQGEGG AGR AVFCRF+GCNLWSGRE DR  A C+FCDTDF+G  G  GG
Sbjct: 3   YSVKEIFLTLQGEGGQAGRAAVFCRFTGCNLWSGREADRDKAICQFCDTDFIGTDGINGG 62

Query: 64  RY-NVDQLADLIEEQW--------ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
           ++ N  +LA  I   W         TG+K     V TGGEPLLQ+D  LI A++ +GF I
Sbjct: 63  KFENAAELAATIASFWPQPTEDTKATGQK---LVVFTGGEPLLQLDTALIDAMHAQGFSI 119

Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
           AVE+NGT+  P+GIDW+C+SPKAG +L  K G ELKLVFPQ  + P      DF+ F LQ
Sbjct: 120 AVESNGTVMAPEGIDWLCISPKAGAELVQKAGTELKLVFPQPGIDPAALENLDFQHFWLQ 179

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           PMDGP    NT  AI YC  +P W LS+QTHK IGI
Sbjct: 180 PMDGPQQAVNTQAAIEYCLAHPLWGLSLQTHKLIGI 215


>gi|187922325|ref|YP_001893967.1| radical SAM protein [Burkholderia phytofirmans PsJN]
 gi|187713519|gb|ACD14743.1| Radical SAM domain protein [Burkholderia phytofirmans PsJN]
          Length = 210

 Score =  253 bits (646), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 122/208 (58%), Positives = 149/208 (71%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  G 
Sbjct: 3   YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGD 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +Y   D L  +I  QW  GE E R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG++
Sbjct: 63  KYRTADDLVKMIAAQWPEGEGE-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
              + IDWICVSPKA   L +  G ELK+V PQ N     Y   DFE F +QPMDGP  +
Sbjct: 122 PVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSEYAKLDFEYFLVQPMDGPSRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 LNTRLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|300311525|ref|YP_003775617.1| organic radical activating enzyme protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074310|gb|ADJ63709.1| organic radical activating enzyme protein [Herbaspirillum
           seropedicae SmR1]
          Length = 229

 Score =  253 bits (645), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 122/208 (58%), Positives = 148/208 (71%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YSIKEIF TLQGEG HAGR AVFCRFSGCNLW+GRE+DR+ A C+FCDTDFVG  G  GG
Sbjct: 21  YSIKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGREEDRVRAICQFCDTDFVGTDGENGG 80

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ +  +LA  I+  W       +Y V TGGEPLLQ+D  LI+A++  GFEIA+ETNGTI
Sbjct: 81  KFKSPAELAAKIDSLWPARYAPSKYVVFTGGEPLLQLDAALIEAMHAVGFEIAIETNGTI 140

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           + P G+DWICVSPK G +LK++ G ELK+V PQ     + Y   DF+ F LQPMDG    
Sbjct: 141 DVPDGVDWICVSPKMGSELKVRRGSELKVVVPQPGQPLDEYEKLDFQHFLLQPMDGLQAA 200

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI     NPKW+LS+QTHK + I
Sbjct: 201 ANTRLAIEMVKNNPKWKLSIQTHKLLNI 228


>gi|238028936|ref|YP_002913167.1| hypothetical protein bglu_1g34010 [Burkholderia glumae BGR1]
 gi|237878130|gb|ACR30463.1| Hypothetical protein bglu_1g34010 [Burkholderia glumae BGR1]
          Length = 210

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 122/208 (58%), Positives = 150/208 (72%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR SA CRFCDTDFVG  G  GG
Sbjct: 3   YTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDSAVCRFCDTDFVGTDGENGG 62

Query: 64  RYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++   +L AD +   W  GE   R+ V TGGEP+LQ+D PL+ AL+ RGFEIA+ETNG++
Sbjct: 63  KFRTPELLADQVAALWPAGEAH-RFVVCTGGEPMLQLDQPLVDALHARGFEIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
                IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP  E
Sbjct: 122 PVLDTIDWICVSPKADAPLVVTRGHELKVVIPQDNQRLADYARLDFEHFLVQPMDGPSRE 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 LNTRLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|20804093|emb|CAD31296.1| HYPOTHETICAL CONSERVED PROTEIN [Mesorhizobium loti R7A]
          Length = 211

 Score =  252 bits (644), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 121/208 (58%), Positives = 145/208 (69%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE DR  A C FCDTDFVG+ G  GG
Sbjct: 3   YAVKEIFYTLQGEGRNAGRAAVFCRFAGCNLWSGREGDRARAFCEFCDTDFVGVDGPGGG 62

Query: 64  RYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
            +   Q  A  +E+ W       R  VLTGGEPLLQ+D  L++AL+   FEIAVETNGTI
Sbjct: 63  HFATAQEFALAVEQAWRGSGTRQRLVVLTGGEPLLQIDEELLEALHSLAFEIAVETNGTI 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
               GIDW+CVSPK    L +  G ELKLV+P++   PE++    FE   LQPMDGP  E
Sbjct: 123 PTLAGIDWLCVSPKCNARLVVMAGDELKLVYPRIGAEPEHFEVLAFEHLLLQPMDGPERE 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT  A++YC  NP+WRLS+QTHKF+GI
Sbjct: 183 ANTAAAVAYCLANPRWRLSLQTHKFLGI 210


>gi|307728151|ref|YP_003905375.1| Radical SAM domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307582686|gb|ADN56084.1| Radical SAM domain protein [Burkholderia sp. CCGE1003]
          Length = 210

 Score =  252 bits (644), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 120/208 (57%), Positives = 153/208 (73%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +Y + ++L  +I  QW  GE + R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG++
Sbjct: 63  KYRSAEELVRMIASQWPQGEGQ-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
              + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DF+ F +QPMDGP  +
Sbjct: 122 PVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSDYAKLDFQYFLVQPMDGPSRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 INTRLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|153876026|ref|ZP_02003554.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152067510|gb|EDN66446.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 209

 Score =  252 bits (643), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 121/208 (58%), Positives = 151/208 (72%), Gaps = 3/208 (1%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIF +LQGEG   GR A+FCRF+GCNLWSGRE+DR  A C+FCDT+F+G  G  GG
Sbjct: 3   YSVKEIFYSLQGEGHQTGRAAIFCRFAGCNLWSGREEDRSIASCQFCDTNFIGTNGQNGG 62

Query: 64  RYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++   Q LA+ +    I   K     + TGGEPLLQ+D PLI+A +  GFEIA+ETNGT+
Sbjct: 63  KFTSAQALAEKVAT--IGMMKHFPLIICTGGEPLLQLDEPLIKAFHHIGFEIAIETNGTL 120

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDWICVSPK    LK++ G ELKLVFPQ N  PE +  FDF+ F LQPMDGP L+
Sbjct: 121 PAPPNIDWICVSPKGNAPLKLQTGNELKLVFPQPNAPPELFEQFDFQYFFLQPMDGPELK 180

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +NT LA+ YC ++P+WRLS+QTHK +GI
Sbjct: 181 KNTQLALRYCLEHPQWRLSLQTHKLLGI 208


>gi|312797586|ref|YP_004030508.1| Queuosine biosynthesis protein QueE [Burkholderia rhizoxinica HKI
           454]
 gi|312169361|emb|CBW76364.1| Queuosine biosynthesis protein QueE [Burkholderia rhizoxinica HKI
           454]
          Length = 263

 Score =  252 bits (643), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 122/210 (58%), Positives = 147/210 (70%), Gaps = 3/210 (1%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGREQDR  A CRFCDTDFVG  G  GG
Sbjct: 53  YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREQDRADAVCRFCDTDFVGTDGENGG 112

Query: 64  RY-NVDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           +Y + D L   I   W  GE     R+ V TGGEP+LQ+D  LI AL++  F IAVETNG
Sbjct: 113 KYRDADALVAKIASLWPPGEAAAQYRFVVCTGGEPMLQLDAALIDALHRERFVIAVETNG 172

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T+    GIDW+CVSPKAG  + +  G ELK+V PQ N     Y   DFE F +QPMDGP 
Sbjct: 173 TLPVLPGIDWVCVSPKAGSSIVVTRGNELKVVIPQDNQPLSEYARLDFEHFLVQPMDGPS 232

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            E NT LA+ +C ++P+WRLS+QTHK++ I
Sbjct: 233 RELNTKLAVDWCKRHPQWRLSMQTHKYLNI 262


>gi|323135766|ref|ZP_08070849.1| hypothetical protein Met49242DRAFT_0236 [Methylocystis sp. ATCC
           49242]
 gi|322398857|gb|EFY01376.1| hypothetical protein Met49242DRAFT_0236 [Methylocystis sp. ATCC
           49242]
          Length = 210

 Score =  251 bits (642), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 120/209 (57%), Positives = 147/209 (70%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +KE F T+QGEG +AGRVAVFCRF+GCNLWSGRE+DR  A C FCDT+F G+ G  GG
Sbjct: 3   YFVKEAFRTVQGEGVNAGRVAVFCRFAGCNLWSGREEDRAEAACNFCDTEFTGVDGEGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++    +LAD +   W   + E R+ VLTGGEP+LQVD  L+ AL+  GFEIA+E+NGTI
Sbjct: 63  KFPGARELADHLVAIW-GADDEDRFIVLTGGEPMLQVDPALVDALHNEGFEIAIESNGTI 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
               GIDWICVSPKAG  +    G ELKLV+PQ  V P  +   DF  F LQPMDGP + 
Sbjct: 122 AAAPGIDWICVSPKAGAPIVQTSGSELKLVYPQPGVDPATFERLDFRHFLLQPMDGPEIV 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT  A+ YC  +P+WRLS+QTHK IG+R
Sbjct: 182 RNTKAAVDYCLAHPRWRLSLQTHKMIGVR 210


>gi|329851462|ref|ZP_08266219.1| hypothetical protein ABI_43030 [Asticcacaulis biprosthecum C19]
 gi|328840308|gb|EGF89880.1| hypothetical protein ABI_43030 [Asticcacaulis biprosthecum C19]
          Length = 210

 Score =  251 bits (642), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 120/210 (57%), Positives = 144/210 (68%), Gaps = 1/210 (0%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +YS KEIFLTLQGEGG AGRV VF RF+GCNLWSGREQDR +A C FCDTDFVG  G  G
Sbjct: 1   MYSFKEIFLTLQGEGGQAGRVNVFARFAGCNLWSGREQDRATAACDFCDTDFVGTDGENG 60

Query: 63  GRYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           GR+     +   ++  W  G   G+  V TGGEPLLQ+D  LI A+   G+ IAVETNGT
Sbjct: 61  GRFPTPADVVAALDAVWGEGRAAGKAVVFTGGEPLLQLDSDLIAAVKAAGYFIAVETNGT 120

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           ++ P GIDW+CVSPK    L    GQELKLV+PQ NV P +++   FERF LQP D P  
Sbjct: 121 LKAPAGIDWVCVSPKGQNRLHQTSGQELKLVWPQENVDPSDFLEMQFERFYLQPKDNPRQ 180

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             NT   I YC  +P+WR+SVQTHK +G++
Sbjct: 181 AANTQAVIDYCLLHPQWRMSVQTHKLVGLK 210


>gi|170694006|ref|ZP_02885162.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
 gi|170141078|gb|EDT09250.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
          Length = 210

 Score =  251 bits (640), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 120/208 (57%), Positives = 150/208 (72%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRADAVCRFCDTDFVGTDGENGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +Y     L  +I  QW  GE + R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG++
Sbjct: 63  KYRTAADLVQMIASQWPEGEGQ-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
              + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DF+ F +QPMDGP  +
Sbjct: 122 PVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSDYAKLDFDYFLVQPMDGPSRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 INTRLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|221201867|ref|ZP_03574904.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
 gi|221207627|ref|ZP_03580635.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221172473|gb|EEE04912.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221178287|gb|EEE10697.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
          Length = 210

 Score =  250 bits (638), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 120/208 (57%), Positives = 149/208 (71%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAQAVCRFCDTDFVGTDGENGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ + D L   I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG++
Sbjct: 63  KFKDADALVATIASLWPDGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
              + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP  +
Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPSRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 LNTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|114328969|ref|YP_746126.1| queuosine biosynthesis protein QueE [Granulibacter bethesdensis
           CGDNIH1]
 gi|114317143|gb|ABI63203.1| queuosine biosynthesis protein QueE [Granulibacter bethesdensis
           CGDNIH1]
          Length = 220

 Score =  250 bits (638), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 122/207 (58%), Positives = 143/207 (69%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR AVFCRF+GCNLWSGRE+DR  A C FCDTDF+G+ G  GG
Sbjct: 13  YTVKEIFLTLQGEGIHAGRPAVFCRFAGCNLWSGREEDRQMAGCTFCDTDFIGMDGENGG 72

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           RY               G  E R+ VLTGGEPLLQVD  LI AL++  F+IAVETNGT  
Sbjct: 73  RYPDAASLARAIAACWQGGAEHRFVVLTGGEPLLQVDAALIDALHEAHFQIAVETNGTQP 132

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
            P G+DWICVSPKA   L + GG ELKLVFPQ +  PE +   +F  F LQP+D     +
Sbjct: 133 APAGLDWICVSPKADNPLVLTGGDELKLVFPQPDAPPERFEALNFRHFLLQPLDDSRRAD 192

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +T  AI YC  +P+WRLSVQTHK +GI
Sbjct: 193 HTRAAIEYCLHHPRWRLSVQTHKTLGI 219


>gi|296115261|ref|ZP_06833901.1| hypothetical protein GXY_05748 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978164|gb|EFG84902.1| hypothetical protein GXY_05748 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 211

 Score =  249 bits (637), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 121/208 (58%), Positives = 141/208 (67%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG  AGR AVFCRF+GCNLWSGRE DR  A CRFCDTDF+G  G  GG
Sbjct: 3   YTVKEIFPTLQGEGSQAGRAAVFCRFAGCNLWSGREIDRDDATCRFCDTDFIGTDGMGGG 62

Query: 64  RYNVDQLADLIEEQWITG-EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+                  +   + V TGGEPLLQ+D  L+ A++ RGF IAVETNGTI
Sbjct: 63  RFADAASLADAIAAAWPAASRRDAFVVFTGGEPLLQLDAALVAAMHARGFFIAVETNGTI 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDWIC+SPKAG  L    G ELKLVFPQ ++ PE   G DF +F LQPMDGP   
Sbjct: 123 RAPDGIDWICMSPKAGAPLVQTSGHELKLVFPQPDLMPEQVAGLDFAQFWLQPMDGPERV 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT+ A+ YC  +P+WRLS+QTHK IGI
Sbjct: 183 SNTSHAVEYCMAHPQWRLSLQTHKLIGI 210


>gi|218529375|ref|YP_002420191.1| hypothetical protein Mchl_1382 [Methylobacterium chloromethanicum
           CM4]
 gi|240137705|ref|YP_002962176.1| hypothetical protein MexAM1_META1p1004 [Methylobacterium extorquens
           AM1]
 gi|218521678|gb|ACK82263.1| conserved hypothetical protein [Methylobacterium chloromethanicum
           CM4]
 gi|240007673|gb|ACS38899.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 212

 Score =  249 bits (637), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 127/210 (60%), Positives = 147/210 (70%), Gaps = 4/210 (1%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE+F TLQGEG  AGR AVFCRFSGCNLWSGRE+DR  A CRFCDTDFVG+ G  GG
Sbjct: 3   YAVKELFHTLQGEGAQAGRAAVFCRFSGCNLWSGREEDRAGAACRFCDTDFVGMDGEGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+ + + LAD I   W  G    RY V TGGEPLLQ+D  LI A++ RGFE+AVETNGT+
Sbjct: 63  RFASAEILADAIAATWAGGTAN-RYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGTL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFSLQPMDGPF 180
             P GIDWICVSPKAG  L    G ELKLVFPQ     +PE +    F    LQPMDGP 
Sbjct: 122 PAPPGIDWICVSPKAGNPLVQTSGDELKLVFPQAEAEAAPERFSDLPFRHHFLQPMDGPD 181

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              +T  A++YC  N +WRLS+QTHK IGI
Sbjct: 182 AAAHTAAAVAYCRSNARWRLSLQTHKIIGI 211


>gi|163850651|ref|YP_001638694.1| hypothetical protein Mext_1221 [Methylobacterium extorquens PA1]
 gi|163662256|gb|ABY29623.1| conserved hypothetical protein [Methylobacterium extorquens PA1]
          Length = 212

 Score =  249 bits (637), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 127/210 (60%), Positives = 147/210 (70%), Gaps = 4/210 (1%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE+F TLQGEG  AGR AVFCRFSGCNLWSGRE+DR  A CRFCDTDFVG+ G  GG
Sbjct: 3   YAVKELFHTLQGEGAQAGRAAVFCRFSGCNLWSGREEDRAGAACRFCDTDFVGMDGEGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+ + + LAD I   W  G    RY V TGGEPLLQ+D  LI A++ RGFE+AVETNGT+
Sbjct: 63  RFASAEILADAIAATWAGGTSN-RYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGTL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFSLQPMDGPF 180
             P GIDWICVSPKAG  L    G ELKLVFPQ     +PE +    F    LQPMDGP 
Sbjct: 122 PAPPGIDWICVSPKAGNPLVQTSGDELKLVFPQAEAEAAPERFSDLPFRHHFLQPMDGPD 181

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              +T  A++YC  N +WRLS+QTHK IGI
Sbjct: 182 AAAHTAAAVAYCRSNARWRLSLQTHKIIGI 211


>gi|239817064|ref|YP_002945974.1| hypothetical protein Vapar_4095 [Variovorax paradoxus S110]
 gi|239803641|gb|ACS20708.1| conserved hypothetical protein [Variovorax paradoxus S110]
          Length = 212

 Score =  249 bits (636), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 124/210 (59%), Positives = 147/210 (70%), Gaps = 2/210 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIF TLQGEGG AG  AVFCRF+GCNLW+GRE+DR +A CRFCDTDFVG  GT GG
Sbjct: 3   YSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWTGREEDRATAVCRFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ N + LAD I  QW   + E R  VLTGGEPLLQVD  L+ AL+ R F IAVE+NGT+
Sbjct: 63  KFKNAELLADTIAAQWPAEDAEHRLVVLTGGEPLLQVDAALVDALHARRFRIAVESNGTV 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-DFERFSLQPMDGPFL 181
             P+GIDW+C+SPKAG     + GQELKLV+ Q     +      +F    LQPMDGP  
Sbjct: 123 AAPEGIDWLCISPKAGAPWVQQRGQELKLVWRQTEFDLDTMARTGEFTHRFLQPMDGPDR 182

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             NT L I+ C ++P WRLSVQTHK  GIR
Sbjct: 183 VANTELCIAECMRHPAWRLSVQTHKITGIR 212


>gi|145589599|ref|YP_001156196.1| radical SAM domain-containing protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048005|gb|ABP34632.1| Radical SAM domain protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 217

 Score =  249 bits (635), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 122/217 (56%), Positives = 157/217 (72%), Gaps = 8/217 (3%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y++KEIF TLQGEG HAGR AVFCRF+GCNLWSGRE+DR +A C+FCDTDFVG  G  G
Sbjct: 1   MYTVKEIFPTLQGEGAHAGRAAVFCRFAGCNLWSGREEDRATAICQFCDTDFVGSDGLGG 60

Query: 63  GRY-NVDQLADLIEEQW--ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           G++   + LA+ IE  W   +   + RY V TGGEPLLQ+D  LI+ L+K+GFE+A+ETN
Sbjct: 61  GKFETANDLANAIELAWKSTSAGPQQRYVVFTGGEPLLQLDEVLIEVLHKKGFEVAIETN 120

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV-NVSPENYIG----FDFERFSLQ 174
           GT++ P+G+DW+CVSPKAG +L +    E+KLV PQ  + S E  +G     D+    LQ
Sbjct: 121 GTLKVPKGVDWVCVSPKAGAELIVLQANEMKLVVPQNGHESLEQLMGRFEKMDYRNRFLQ 180

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           PMDGP L+ NT LA+  C + P WRLS+Q+HK IGIR
Sbjct: 181 PMDGPNLKSNTELAVGLCQKRPLWRLSIQSHKLIGIR 217


>gi|33593629|ref|NP_881273.1| hypothetical protein BP2659 [Bordetella pertussis Tohama I]
 gi|33563702|emb|CAE42935.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
          Length = 210

 Score =  249 bits (635), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 115/207 (55%), Positives = 140/207 (67%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KE+F TLQGEG  AGR AVFCRF+GCNLW+GRE DR  A C FCDTDFVG  G  GG
Sbjct: 3   YSVKELFKTLQGEGAQAGRAAVFCRFAGCNLWTGRESDRAGAACTFCDTDFVGTDGQGGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           ++                    RY V TGGEPLLQ+D  L+QA++ +GF +A+ETNGT+ 
Sbjct: 63  KFADAAGLADAIAACWGEHPADRYVVFTGGEPLLQLDEALLQAVHAQGFTVAIETNGTLP 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
           PP GIDWICVSPK    + ++ G ELKLVFPQ +  PE +    FE F LQPMDGP    
Sbjct: 123 PPPGIDWICVSPKGRAPVVVERGHELKLVFPQADARPEAFAHLAFEHFFLQPMDGPARAA 182

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +T  A+ YC  +P+WRLS+QTHK+IGI
Sbjct: 183 HTTQAVQYCLDHPQWRLSLQTHKYIGI 209


>gi|325518103|gb|EGC97893.1| organic radical activating enzyme-like protein [Burkholderia sp.
           TJI49]
          Length = 210

 Score =  249 bits (635), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 120/208 (57%), Positives = 149/208 (71%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ + D L   I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG++
Sbjct: 63  KFKDADALVATIAGLWPDGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
              + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP  +
Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPSRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 LNTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|312113885|ref|YP_004011481.1| hypothetical protein Rvan_1111 [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219014|gb|ADP70382.1| hypothetical protein Rvan_1111 [Rhodomicrobium vannielii ATCC
           17100]
          Length = 213

 Score =  249 bits (635), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 117/213 (54%), Positives = 145/213 (68%), Gaps = 4/213 (1%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y++KEIF TLQGEG   GR AVF RF+GCNLW+G+ +D+  A CRFCDTDFVG  G  G
Sbjct: 1   MYTVKEIFPTLQGEGAQVGRAAVFLRFAGCNLWTGQHKDKSKAFCRFCDTDFVGYDGPNG 60

Query: 63  GRY-NVDQLADLIEEQW---ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
           G++   DQLAD++   W     G+    Y V TGGEP LQ+D P+I AL KRGF +A+E+
Sbjct: 61  GKFETADQLADIVLGMWNSLTKGKTASPYVVCTGGEPTLQLDTPMIDALKKRGFTVAIES 120

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
           NGT   P+G+DWIC+SPKAG  L  + G ELKLV+PQ    P+ +    FE F LQPMDG
Sbjct: 121 NGTRPAPRGLDWICISPKAGVPLAQREGNELKLVYPQTGALPQLFERLKFEHFFLQPMDG 180

Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           P   +N   AI YC  NP WRLS+Q HK +GIR
Sbjct: 181 PQHRDNIEAAIRYCMANPPWRLSMQMHKLVGIR 213


>gi|221214677|ref|ZP_03587647.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
 gi|221165567|gb|EED98043.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
          Length = 210

 Score =  249 bits (635), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 120/208 (57%), Positives = 149/208 (71%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAQAVCRFCDTDFVGTDGENGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ + D L   I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG++
Sbjct: 63  KFKDADALVATIAGLWPDGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
              + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP  +
Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPSRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 LNTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|330818676|ref|YP_004362381.1| hypothetical protein bgla_1g38230 [Burkholderia gladioli BSR3]
 gi|327371069|gb|AEA62425.1| hypothetical protein bgla_1g38230 [Burkholderia gladioli BSR3]
          Length = 210

 Score =  248 bits (634), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 118/208 (56%), Positives = 152/208 (73%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR +A CRFCDTDFVG  G  GG
Sbjct: 3   YTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRETAVCRFCDTDFVGTDGENGG 62

Query: 64  RYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++   +QLA ++   W  GE   R+ V TGGEP+LQ+D PL+ AL+ +GFEIA+ETNG++
Sbjct: 63  KFKTPEQLAAMVASLWPEGEA-NRFVVCTGGEPMLQLDQPLVDALHAQGFEIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
              + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DF+ F +QPMDGP  +
Sbjct: 122 PVLETIDWICVSPKADAPLVVTKGHELKVVVPQDNQRLADYARLDFDYFLVQPMDGPSRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 INTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|114569269|ref|YP_755949.1| radical SAM domain-containing protein [Maricaulis maris MCS10]
 gi|114339731|gb|ABI65011.1| Radical SAM domain protein [Maricaulis maris MCS10]
          Length = 209

 Score =  248 bits (634), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 123/207 (59%), Positives = 143/207 (69%), Gaps = 3/207 (1%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KE FLT+QGEG  AGR AVF RFSGCNLWSGREQDR  A C FCDTDFVG+ G  GG
Sbjct: 3   YSVKERFLTVQGEGAQAGRPAVFLRFSGCNLWSGREQDRHKAVCNFCDTDFVGMDGPGGG 62

Query: 64  RYNVD-QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+     L D + E W  G +    C  TGGEPLLQ+D  LI AL+ RGFEIAVETNGT+
Sbjct: 63  RFKTAVSLVDAVAELWPGGGRPLVVC--TGGEPLLQLDTSLIDALHARGFEIAVETNGTV 120

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDWI VSPK    +    G ELKLV+PQ  + P  +  +DF+RFSLQPMDGP + 
Sbjct: 121 RAPDGIDWITVSPKGTAPVVQTSGHELKLVYPQPELDPTAFEDWDFKRFSLQPMDGPQMM 180

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIG 209
           EN   A  YC  +P+W LS+QTHK+IG
Sbjct: 181 ENAQAAFDYCLAHPQWSLSLQTHKWIG 207


>gi|33596287|ref|NP_883930.1| hypothetical protein BPP1653 [Bordetella parapertussis 12822]
 gi|33602051|ref|NP_889611.1| hypothetical protein BB3075 [Bordetella bronchiseptica RB50]
 gi|33566056|emb|CAE36954.1| conserved hypothetical protein [Bordetella parapertussis]
 gi|33576489|emb|CAE33567.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 210

 Score =  248 bits (634), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 115/207 (55%), Positives = 140/207 (67%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KE+F TLQGEG  AGR AVFCRF+GCNLW+GRE DR  A C FCDTDFVG  G  GG
Sbjct: 3   YSVKELFKTLQGEGAQAGRAAVFCRFAGCNLWTGRESDRAGAACTFCDTDFVGTDGQGGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           ++                    RY V TGGEPLLQ+D  L+QA++ +GF +A+ETNGT+ 
Sbjct: 63  KFADAAGLADAIAACWGEHPADRYVVFTGGEPLLQLDEALLQAVHAQGFTVAIETNGTLP 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
           PP GIDWICVSPK    + ++ G ELKLVFPQ +  PE +    FE F LQPMDGP    
Sbjct: 123 PPPGIDWICVSPKGRAPVVVERGHELKLVFPQADARPEAFAHLAFEHFFLQPMDGPARAA 182

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +T  A+ YC  +P+WRLS+QTHK+IGI
Sbjct: 183 HTAQAVQYCLDHPQWRLSLQTHKYIGI 209


>gi|85813929|emb|CAF31558.1| putative fortimicin production protein [Micromonospora
           olivasterospora]
          Length = 212

 Score =  248 bits (632), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 119/211 (56%), Positives = 143/211 (67%), Gaps = 3/211 (1%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y +KEIF TLQGEG HAGR AVFCRF+ CNLW+GRE++R  A C+FCDTDFVG  G  G
Sbjct: 1   MYRVKEIFYTLQGEGSHAGRPAVFCRFTSCNLWTGREEERHRAICQFCDTDFVGTDGPGG 60

Query: 63  GRYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           GR+               GE   R   Y V TGGEPLLQ+D   ++AL+  GFE+AVETN
Sbjct: 61  GRFATAAELAAAVVAAWRGEDHPRSRPYVVCTGGEPLLQLDEAAVRALHDAGFEVAVETN 120

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GT   P GIDW+CVSPKAG DL +  G +LKLV+PQ    P  + G DF  F LQPMDGP
Sbjct: 121 GTRPAPPGIDWVCVSPKAGADLVLTRGDDLKLVYPQPGAEPARFEGLDFAHFMLQPMDGP 180

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               NT  A+ YC ++P+WRLS+QTHK+IGI
Sbjct: 181 DRVANTEAAVRYCLEHPQWRLSLQTHKYIGI 211


>gi|83749823|ref|ZP_00946794.1| Queuosine biosynthesis protein QueE [Ralstonia solanacearum UW551]
 gi|207723445|ref|YP_002253844.1| organic radical activating enzyme protein [Ralstonia solanacearum
           MolK2]
 gi|207743201|ref|YP_002259593.1| organic radical activating enzyme protein [Ralstonia solanacearum
           IPO1609]
 gi|83723503|gb|EAP70710.1| Queuosine biosynthesis protein QueE [Ralstonia solanacearum UW551]
 gi|206588646|emb|CAQ35609.1| organic radical activating enzyme protein [Ralstonia solanacearum
           MolK2]
 gi|206594598|emb|CAQ61525.1| organic radical activating enzyme protein [Ralstonia solanacearum
           IPO1609]
          Length = 224

 Score =  248 bits (632), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 126/210 (60%), Positives = 150/210 (71%), Gaps = 2/210 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG  GT GG
Sbjct: 15  YAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRAAAVCQFCDTDFVGTDGTLGG 74

Query: 64  RY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           +Y   D LADL+  QW      G+   V TGGEPLLQ+D PLI AL+ RGFEIAVETNGT
Sbjct: 75  KYATADALADLVAAQWPADATGGQPLVVCTGGEPLLQLDRPLIDALHARGFEIAVETNGT 134

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           +  P+GIDW+CVSPK G +L +  G ELK+V PQ     + Y   DF  F LQPMDGP  
Sbjct: 135 VAVPEGIDWVCVSPKMGAELVVTRGDELKVVIPQPGQDLDAYERLDFRHFFLQPMDGPLA 194

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            +NT LA+  C + P+W LS+QTHK +GIR
Sbjct: 195 RQNTALAVELCQRRPRWHLSLQTHKMLGIR 224


>gi|304320027|ref|YP_003853670.1| hypothetical protein PB2503_02257 [Parvularcula bermudensis
           HTCC2503]
 gi|303298930|gb|ADM08529.1| hypothetical protein PB2503_02257 [Parvularcula bermudensis
           HTCC2503]
          Length = 213

 Score =  247 bits (631), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 121/207 (58%), Positives = 140/207 (67%), Gaps = 2/207 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y+IKE + TLQGEG  AGR AVF RF+GCNLWSGRE DR  A CRFCDTDFVG  G  GG
Sbjct: 8   YAIKECYYTLQGEGAQAGRAAVFLRFAGCNLWSGREIDREEAICRFCDTDFVGTDGPGGG 67

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R+  ++LA  +   W  G     Y V TGGEPLLQ+D PLI AL+  GFEI VETNGTI 
Sbjct: 68  RFVAEELAAHVASFWPGGGSP--YVVATGGEPLLQLDSPLIDALHDEGFEIGVETNGTIA 125

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
            P G+DWICVSPK+  +L    G ELKLVFPQ +  P+ + G  F+ F LQPMDGP+   
Sbjct: 126 APAGLDWICVSPKSTAELVQTEGDELKLVFPQSDAPPDQFSGLAFDHFFLQPMDGPYQSI 185

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
                + YC  NP WRLS+QTHK IGI
Sbjct: 186 AIATTVDYCRANPLWRLSLQTHKLIGI 212


>gi|167834987|ref|ZP_02461870.1| hypothetical protein Bpse38_00765 [Burkholderia thailandensis
           MSMB43]
          Length = 210

 Score =  247 bits (631), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 119/208 (57%), Positives = 148/208 (71%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDGAVCRFCDTDFVGTDGENGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ +   LA+ I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GF IA+ETNG++
Sbjct: 63  KFKDAASLAEKIASLWPAGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
              + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP  E
Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQHLADYAKLDFEHFLVQPMDGPSRE 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 LNTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|254560274|ref|YP_003067369.1| hypothetical protein METDI1804 [Methylobacterium extorquens DM4]
 gi|254267552|emb|CAX23394.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
          Length = 212

 Score =  247 bits (630), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 126/210 (60%), Positives = 146/210 (69%), Gaps = 4/210 (1%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE+F TLQGEG  AGR AVFCRFSGCNLWSGRE+DR  A CRFCDTDFVG+ G  GG
Sbjct: 3   YAVKELFHTLQGEGAQAGRAAVFCRFSGCNLWSGREEDRAGAACRFCDTDFVGMDGEGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+ + + LA  I   W  G    RY V TGGEPLLQ+D  LI A++ RGFE+AVETNGT+
Sbjct: 63  RFASAEILAGAIAATWAGGTAN-RYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGTL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFSLQPMDGPF 180
             P GIDWICVSPKAG  L    G ELKLVFPQ     +PE +    F    LQPMDGP 
Sbjct: 122 PAPPGIDWICVSPKAGNPLVQTSGDELKLVFPQAEAEAAPERFSDLPFRHHFLQPMDGPD 181

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              +T  A++YC  N +WRLS+QTHK IGI
Sbjct: 182 AAAHTAAAVAYCRSNARWRLSLQTHKIIGI 211


>gi|103486840|ref|YP_616401.1| hypothetical protein Sala_1354 [Sphingopyxis alaskensis RB2256]
 gi|98976917|gb|ABF53068.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256]
          Length = 210

 Score =  247 bits (630), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 120/209 (57%), Positives = 142/209 (67%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIFLTLQGEG  AGR AVFCRF+GCNLW+GREQDR  A CRFCDTDFVG  GT G 
Sbjct: 3   YSVKEIFLTLQGEGAQAGRRAVFCRFAGCNLWTGREQDRAKAICRFCDTDFVGTDGTLGA 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +Y +   LAD+I E W  G  + RY VLTGGEP+LQVD  LI AL+ RGF IA+E+NGT+
Sbjct: 63  KYRDAAALADVIAESWGPGSDD-RYVVLTGGEPMLQVDDALIDALHARGFTIAIESNGTL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+ IDWICVSPKAG +L    G ELKLV+PQ           DF    +QP+D     
Sbjct: 122 PIPRSIDWICVSPKAGSELVQSSGDELKLVWPQPGSDVAKLAALDFRHLLVQPLDDRNAA 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            N    I     +P+WRLS+QTHK +G+R
Sbjct: 182 ANVQACIDLVMADPRWRLSLQTHKSLGLR 210


>gi|115353224|ref|YP_775063.1| organic radical activating enzyme-like protein [Burkholderia
           ambifaria AMMD]
 gi|170703437|ref|ZP_02894209.1| organic radical activating enzyme-like protein [Burkholderia
           ambifaria IOP40-10]
 gi|171319449|ref|ZP_02908554.1| organic radical activating enzyme-like protein [Burkholderia
           ambifaria MEX-5]
 gi|172062096|ref|YP_001809748.1| organic radical activating enzyme-like protein [Burkholderia
           ambifaria MC40-6]
 gi|115283212|gb|ABI88729.1| organic radical activating enzyme-like protein [Burkholderia
           ambifaria AMMD]
 gi|170131652|gb|EDT00208.1| organic radical activating enzyme-like protein [Burkholderia
           ambifaria IOP40-10]
 gi|171095341|gb|EDT40322.1| organic radical activating enzyme-like protein [Burkholderia
           ambifaria MEX-5]
 gi|171994613|gb|ACB65532.1| organic radical activating enzyme-like protein [Burkholderia
           ambifaria MC40-6]
          Length = 210

 Score =  246 bits (629), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 119/208 (57%), Positives = 149/208 (71%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ + + L   I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG++
Sbjct: 63  KFKDAEALVATIAGLWPDGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
              + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP  +
Sbjct: 122 PVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPSRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 LNTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|161526284|ref|YP_001581296.1| organic radical activating enzyme-like protein [Burkholderia
           multivorans ATCC 17616]
 gi|189349002|ref|YP_001944630.1| hypothetical protein BMULJ_00116 [Burkholderia multivorans ATCC
           17616]
 gi|160343713|gb|ABX16799.1| organic radical activating enzyme-like protein [Burkholderia
           multivorans ATCC 17616]
 gi|189333024|dbj|BAG42094.1| conserved hypothetical protein [Burkholderia multivorans ATCC
           17616]
          Length = 210

 Score =  246 bits (628), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 119/208 (57%), Positives = 148/208 (71%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAQAVCRFCDTDFVGTDGENGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ + D L   I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GF IA+ETNG++
Sbjct: 63  KFKDADALVATIAGLWPAGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFGIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
              + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP  +
Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPSRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 LNTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|78067938|ref|YP_370707.1| organic radical activating-like protein [Burkholderia sp. 383]
 gi|77968683|gb|ABB10063.1| Organic radical activating enzymes-like protein [Burkholderia sp.
           383]
          Length = 210

 Score =  246 bits (628), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 118/208 (56%), Positives = 149/208 (71%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ + + L   I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG++
Sbjct: 63  KFKDAEALVATIAGLWPEGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
              + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE + +QPMDGP  +
Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYYLVQPMDGPSRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 LNTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|206558876|ref|YP_002229636.1| hypothetical protein BCAL0474 [Burkholderia cenocepacia J2315]
 gi|198034913|emb|CAR50785.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
          Length = 210

 Score =  246 bits (627), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/208 (57%), Positives = 148/208 (71%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ +   L   I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG++
Sbjct: 63  KFKDAAALVATIAGLWPEGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
              + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP  +
Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEYFLVQPMDGPSRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 LNTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|53717820|ref|YP_106806.1| hypothetical protein BPSL0178 [Burkholderia pseudomallei K96243]
 gi|53724959|ref|YP_101992.1| hypothetical protein BMA0153 [Burkholderia mallei ATCC 23344]
 gi|67642462|ref|ZP_00441218.1| organic radical activating enzyme [Burkholderia mallei GB8 horse 4]
 gi|76808972|ref|YP_331771.1| GntS [Burkholderia pseudomallei 1710b]
 gi|121598296|ref|YP_994090.1| hypothetical protein BMASAVP1_A2794 [Burkholderia mallei SAVP1]
 gi|124385117|ref|YP_001028247.1| hypothetical protein BMA10229_A2285 [Burkholderia mallei NCTC
           10229]
 gi|126439185|ref|YP_001057215.1| organic radical activating protein [Burkholderia pseudomallei 668]
 gi|126450309|ref|YP_001081890.1| hypothetical protein BMA10247_2364 [Burkholderia mallei NCTC 10247]
 gi|134284085|ref|ZP_01770779.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
 gi|167717531|ref|ZP_02400767.1| hypothetical protein BpseD_00837 [Burkholderia pseudomallei DM98]
 gi|167736572|ref|ZP_02409346.1| hypothetical protein Bpse14_00837 [Burkholderia pseudomallei 14]
 gi|167813673|ref|ZP_02445353.1| hypothetical protein Bpse9_00961 [Burkholderia pseudomallei 91]
 gi|167822191|ref|ZP_02453662.1| hypothetical protein Bpseu9_00842 [Burkholderia pseudomallei 9]
 gi|167892283|ref|ZP_02479685.1| hypothetical protein Bpse7_00882 [Burkholderia pseudomallei 7894]
 gi|167900778|ref|ZP_02487983.1| hypothetical protein BpseN_00787 [Burkholderia pseudomallei NCTC
           13177]
 gi|167917042|ref|ZP_02504133.1| hypothetical protein BpseBC_00742 [Burkholderia pseudomallei
           BCC215]
 gi|217424912|ref|ZP_03456408.1| conserved hypothetical protein [Burkholderia pseudomallei 576]
 gi|226194613|ref|ZP_03790208.1| conserved hypothetical protein [Burkholderia pseudomallei Pakistan
           9]
 gi|237810350|ref|YP_002894801.1| radical SAM domain protein [Burkholderia pseudomallei MSHR346]
 gi|251767984|ref|ZP_02269071.2| conserved hypothetical protein [Burkholderia mallei PRL-20]
 gi|254176794|ref|ZP_04883451.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399]
 gi|254182243|ref|ZP_04888840.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
 gi|254188167|ref|ZP_04894679.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254203672|ref|ZP_04910032.1| conserved hypothetical protein [Burkholderia mallei FMH]
 gi|254208648|ref|ZP_04914996.1| conserved hypothetical protein [Burkholderia mallei JHU]
 gi|254258885|ref|ZP_04949939.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a]
 gi|254360298|ref|ZP_04976568.1| conserved hypothetical protein [Burkholderia mallei 2002721280]
 gi|52208234|emb|CAH34165.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|52428382|gb|AAU48975.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344]
 gi|76578425|gb|ABA47900.1| GntS [Burkholderia pseudomallei 1710b]
 gi|121227106|gb|ABM49624.1| conserved hypothetical protein [Burkholderia mallei SAVP1]
 gi|124293137|gb|ABN02406.1| conserved hypothetical protein [Burkholderia mallei NCTC 10229]
 gi|126218678|gb|ABN82184.1| conserved hypothetical protein [Burkholderia pseudomallei 668]
 gi|126243179|gb|ABO06272.1| conserved hypothetical protein [Burkholderia mallei NCTC 10247]
 gi|134244537|gb|EBA44641.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
 gi|147745184|gb|EDK52264.1| conserved hypothetical protein [Burkholderia mallei FMH]
 gi|147750524|gb|EDK57593.1| conserved hypothetical protein [Burkholderia mallei JHU]
 gi|148029538|gb|EDK87443.1| conserved hypothetical protein [Burkholderia mallei 2002721280]
 gi|157935847|gb|EDO91517.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|160697835|gb|EDP87805.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399]
 gi|184212781|gb|EDU09824.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
 gi|217391932|gb|EEC31958.1| conserved hypothetical protein [Burkholderia pseudomallei 576]
 gi|225933314|gb|EEH29306.1| conserved hypothetical protein [Burkholderia pseudomallei Pakistan
           9]
 gi|237506322|gb|ACQ98640.1| radical SAM domain protein [Burkholderia pseudomallei MSHR346]
 gi|238523620|gb|EEP87057.1| organic radical activating enzyme [Burkholderia mallei GB8 horse 4]
 gi|243061139|gb|EES43325.1| conserved hypothetical protein [Burkholderia mallei PRL-20]
 gi|254217574|gb|EET06958.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a]
          Length = 210

 Score =  246 bits (627), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/208 (57%), Positives = 147/208 (70%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDGAVCRFCDTDFVGTDGENGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ +   LA  I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GF IA+ETNG++
Sbjct: 63  KFKDAASLAARIASLWPAGEAY-RFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
              + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP  E
Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPSRE 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 LNTRLAIDWCKRHPRWRLSMQTHKYLNI 209


>gi|134297293|ref|YP_001121028.1| organic radical activating enzyme-like protein [Burkholderia
           vietnamiensis G4]
 gi|134140450|gb|ABO56193.1| organic radical activating enzyme-like protein [Burkholderia
           vietnamiensis G4]
          Length = 210

 Score =  246 bits (627), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/208 (57%), Positives = 147/208 (70%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRADAVCRFCDTDFVGTDGENGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ +   L   I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG++
Sbjct: 63  KFKDAAALVATIAGLWPHGEAH-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
                IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP  +
Sbjct: 122 PVLDTIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPSRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 INTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|126452181|ref|YP_001064455.1| hypothetical protein BURPS1106A_0172 [Burkholderia pseudomallei
           1106a]
 gi|167843783|ref|ZP_02469291.1| hypothetical protein BpseB_00735 [Burkholderia pseudomallei B7210]
 gi|167909000|ref|ZP_02496091.1| hypothetical protein Bpse112_00785 [Burkholderia pseudomallei 112]
 gi|242315880|ref|ZP_04814896.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b]
 gi|254197017|ref|ZP_04903441.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
 gi|254295716|ref|ZP_04963173.1| conserved hypothetical protein [Burkholderia pseudomallei 406e]
 gi|126225823|gb|ABN89363.1| conserved hypothetical protein [Burkholderia pseudomallei 1106a]
 gi|157806282|gb|EDO83452.1| conserved hypothetical protein [Burkholderia pseudomallei 406e]
 gi|169653760|gb|EDS86453.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
 gi|242139119|gb|EES25521.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b]
          Length = 210

 Score =  245 bits (626), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/208 (57%), Positives = 147/208 (70%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDGAVCRFCDTDFVGTDGENGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ +   LA  I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GF IA+ETNG++
Sbjct: 63  KFEDAASLAARIASLWPAGEAY-RFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
              + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP  E
Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPSRE 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 LNTRLAIDWCKRHPRWRLSMQTHKYLNI 209


>gi|107024049|ref|YP_622376.1| organic radical activating enzymes-like [Burkholderia cenocepacia
           AU 1054]
 gi|116691136|ref|YP_836759.1| organic radical activating enzymes-like protein [Burkholderia
           cenocepacia HI2424]
 gi|170734467|ref|YP_001766414.1| organic radical activating enzyme-like protein [Burkholderia
           cenocepacia MC0-3]
 gi|105894238|gb|ABF77403.1| organic radical activating enzymes-like protein [Burkholderia
           cenocepacia AU 1054]
 gi|116649225|gb|ABK09866.1| organic radical activating enzymes-like protein [Burkholderia
           cenocepacia HI2424]
 gi|169817709|gb|ACA92292.1| organic radical activating enzyme-like protein [Burkholderia
           cenocepacia MC0-3]
          Length = 210

 Score =  245 bits (626), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/208 (57%), Positives = 148/208 (71%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ +   L   I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG++
Sbjct: 63  KFKDAAALVATIAGLWPEGEA-NRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
              + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP  +
Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEYFLVQPMDGPSRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 LNTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|83720295|ref|YP_440696.1| hypothetical protein BTH_I0138 [Burkholderia thailandensis E264]
 gi|167579367|ref|ZP_02372241.1| hypothetical protein BthaT_14560 [Burkholderia thailandensis TXDOH]
 gi|167617468|ref|ZP_02386099.1| hypothetical protein BthaB_14260 [Burkholderia thailandensis Bt4]
 gi|257140656|ref|ZP_05588918.1| hypothetical protein BthaA_15810 [Burkholderia thailandensis E264]
 gi|83654120|gb|ABC38183.1| conserved hypothetical protein [Burkholderia thailandensis E264]
          Length = 210

 Score =  245 bits (626), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/208 (57%), Positives = 147/208 (70%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRGDAVCRFCDTDFVGTDGENGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ +   LA  I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GF IA+ETNG++
Sbjct: 63  KFKDAASLAAKIASLWPPGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
              + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP  E
Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPSRE 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 LNTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|167561072|ref|ZP_02353988.1| hypothetical protein BoklE_00844 [Burkholderia oklahomensis EO147]
          Length = 210

 Score =  244 bits (624), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 118/208 (56%), Positives = 148/208 (71%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRDGAVCRFCDTDFVGTDGENGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ + + LA  I   W  GE   R+ V TGGEP+LQ+D  L+ AL+  GF IA+ETNG++
Sbjct: 63  KFKDAESLAAQIASLWPEGEAH-RFVVCTGGEPMLQLDQALVDALHAAGFTIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
              + IDW+CVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP  +
Sbjct: 122 PVLESIDWVCVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPSRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++PKWRLS+QTHK++ I
Sbjct: 182 FNTKLAIDWCKRHPKWRLSMQTHKYLNI 209


>gi|186474815|ref|YP_001856285.1| radical SAM domain-containing protein [Burkholderia phymatum
           STM815]
 gi|184191274|gb|ACC69239.1| Radical SAM domain protein [Burkholderia phymatum STM815]
          Length = 210

 Score =  244 bits (624), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 118/208 (56%), Positives = 151/208 (72%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A C+FCDTDFVG  G  GG
Sbjct: 3   YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRADAVCKFCDTDFVGTDGENGG 62

Query: 64  RYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++   ++LA  I   W  GE + R+ V TGGEP+LQ+D PL+ AL+ +GFEIA+ETNG++
Sbjct: 63  KFRTPEELAAKIASLWPEGEDQ-RFVVCTGGEPMLQIDQPLVDALHAQGFEIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
                IDWICVSPKAG  L    G ELK+V PQ N    +Y   +F+ F +QPMDGP  +
Sbjct: 122 PVLDTIDWICVSPKAGAPLVQTKGNELKVVVPQDNQRLADYAKLEFDYFLVQPMDGPSRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 INTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|167568301|ref|ZP_02361175.1| hypothetical protein BoklC_00570 [Burkholderia oklahomensis C6786]
          Length = 210

 Score =  244 bits (624), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 118/208 (56%), Positives = 148/208 (71%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRDGAVCRFCDTDFVGADGENGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ + + LA  I   W  GE   R+ V TGGEP+LQ+D  L+ AL+  GF IA+ETNG++
Sbjct: 63  KFKDAESLAAQIASLWPEGEAH-RFVVCTGGEPMLQLDQALVDALHAAGFTIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
              + IDW+CVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP  +
Sbjct: 122 PVLESIDWVCVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPSRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++PKWRLS+QTHK++ I
Sbjct: 182 FNTKLAIDWCKRHPKWRLSMQTHKYLNI 209


>gi|92114161|ref|YP_574089.1| hypothetical protein Csal_2039 [Chromohalobacter salexigens DSM
           3043]
 gi|91797251|gb|ABE59390.1| conserved hypothetical protein [Chromohalobacter salexigens DSM
           3043]
          Length = 215

 Score =  244 bits (623), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 116/214 (54%), Positives = 144/214 (67%), Gaps = 6/214 (2%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +YS+KE F TLQGEG  AGR +VFCRF+GCNLWSGRE+DR  ++CRFCDTDFVG  G  G
Sbjct: 1   MYSVKEAFYTLQGEGARAGRASVFCRFTGCNLWSGRERDRAQSRCRFCDTDFVGTDGQNG 60

Query: 63  GRY-NVDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           GR+ +   LA  +   W   +      Y V TGGEPLLQ+D  LI A+   GFE+AVETN
Sbjct: 61  GRFADAHALATHLHRLWPGTDDTAATPYVVFTGGEPLLQLDTALITAMRAHGFEVAVETN 120

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD-G 178
           GT+ PP GIDW+CVSPK    L+I  G ELKLV+PQ +  P N+   DF  F LQPMD  
Sbjct: 121 GTLTPPDGIDWLCVSPKGDAPLRITQGDELKLVYPQDDAPPANFTHLDFAHFFLQPMDLA 180

Query: 179 PFLEENTNL--AISYCFQNPKWRLSVQTHKFIGI 210
           P   + T +   ++YC  +P+WRL++QTHK  GI
Sbjct: 181 PRGGQGTTMTDTVAYCLDHPQWRLALQTHKIAGI 214


>gi|299531400|ref|ZP_07044808.1| hypothetical protein CTS44_11451 [Comamonas testosteroni S44]
 gi|298720563|gb|EFI61512.1| hypothetical protein CTS44_11451 [Comamonas testosteroni S44]
          Length = 212

 Score =  244 bits (623), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 121/210 (57%), Positives = 144/210 (68%), Gaps = 2/210 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIF TLQGEGG AG  AVFCRF+GCNLW+GREQDR  A C+FCDTDFVG  GT GG
Sbjct: 3   YSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWTGREQDRPKAICQFCDTDFVGTDGTLGG 62

Query: 64  RYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++   D+LA+ I  QW   +   R  VLTGGEPLLQVD  LI AL+ RGF I+VE+NGT+
Sbjct: 63  KFTTADELAERILGQWPADDSRHRMVVLTGGEPLLQVDQALIAALHARGFRISVESNGTV 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY-IGFDFERFSLQPMDGPFL 181
             P+GIDW+C+SPKAG D   + GQELKLV+PQ            +F+ + LQPMD    
Sbjct: 123 TAPEGIDWLCISPKAGADWIQRSGQELKLVWPQPTFDLAAIEASTEFQHYFLQPMDNAQQ 182

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             N    I+ C Q P WRLS+QTHK  GIR
Sbjct: 183 SSNIAACIAQCMQRPGWRLSLQTHKLTGIR 212


>gi|221065388|ref|ZP_03541493.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
 gi|220710411|gb|EED65779.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
          Length = 212

 Score =  244 bits (622), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 122/210 (58%), Positives = 143/210 (68%), Gaps = 2/210 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIF TLQGEGG AG  AVFCRF+GCNLW+GREQDR +A C+FCDTDFVG  GT GG
Sbjct: 3   YSVKEIFYTLQGEGGQAGTPAVFCRFAGCNLWTGREQDRPNAICQFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++   D LA+ I  QW   +   R  VLTGGEPLLQVD  LI AL+ RGF I+VE+NGT+
Sbjct: 63  KFATADALAERILSQWPADDSLHRMVVLTGGEPLLQVDEALIAALHARGFRISVESNGTV 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY-IGFDFERFSLQPMDGPFL 181
             P+GIDW+C+SPKAG D   + GQELKLV+PQ            DF+ + LQPMD    
Sbjct: 123 AAPEGIDWLCISPKAGADWIQRSGQELKLVWPQPTFDLAAIEASTDFQHYFLQPMDNAQQ 182

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             N    I  C Q P WRLS+QTHK  GIR
Sbjct: 183 SGNITACIEQCMQRPGWRLSLQTHKLTGIR 212


>gi|152968324|ref|YP_001364108.1| hypothetical protein Krad_4381 [Kineococcus radiotolerans SRS30216]
 gi|151362841|gb|ABS05844.1| conserved hypothetical protein [Kineococcus radiotolerans SRS30216]
          Length = 237

 Score =  244 bits (622), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 121/234 (51%), Positives = 146/234 (62%), Gaps = 27/234 (11%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +KEIF TLQGEG HAGR AVFCRFS CNLW+GRE+DR  A C FCDTDFVG  G  GG
Sbjct: 3   YLLKEIFYTLQGEGTHAGRPAVFCRFSRCNLWTGREKDRARAICTFCDTDFVGTDGVGGG 62

Query: 64  RYNVDQLA---------------DLIEEQWITGEKEG------------RYCVLTGGEPL 96
           R+                     D  +   IT E +             ++ V TGGEPL
Sbjct: 63  RFATADDLAAAVDASWPAAGLTDDFTDGSAITAESDSSAHSHAPHGAQRKFVVCTGGEPL 122

Query: 97  LQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156
           LQ+D   +QAL++RGFE+AVETNGT  PP GIDW+CVSPK G DL +  G ELKLV+PQ 
Sbjct: 123 LQLDDAAVQALHQRGFEVAVETNGTRTPPPGIDWLCVSPKIGADLVVSRGDELKLVYPQA 182

Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              P  +   DF  F LQPMDGP ++ +T  AI YC  +P+W LS+QTHK++GI
Sbjct: 183 GGDPAQFAELDFTSFRLQPMDGPDVQAHTRAAIDYCLTHPQWSLSMQTHKYLGI 236


>gi|188580423|ref|YP_001923868.1| radical SAM domain protein [Methylobacterium populi BJ001]
 gi|179343921|gb|ACB79333.1| Radical SAM domain protein [Methylobacterium populi BJ001]
          Length = 210

 Score =  243 bits (621), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 121/207 (58%), Positives = 142/207 (68%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE+F TLQGEG  AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDF+G+ G  GG
Sbjct: 3   YAVKELFHTLQGEGAQAGRAAVFCRFAGCNLWSGREEDRAEAACRFCDTDFIGMDGEGGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R++  +           G K  RY V TGGEPLLQ+D  LI A++ RGFE+AVETNGT+ 
Sbjct: 63  RFSDAEALAEAIAATWGGGKANRYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGTLP 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
            P GIDWICVSPKAG  L    G ELKLVFPQ    PE +    F    LQPMDGP    
Sbjct: 123 APPGIDWICVSPKAGNPLAQTSGDELKLVFPQAEALPERFADLPFRHHFLQPMDGPEAAA 182

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
           NT  A++YC  + +WRLS+QTHK IGI
Sbjct: 183 NTAAAVAYCRSDARWRLSLQTHKIIGI 209


>gi|264679996|ref|YP_003279905.1| hypothetical protein CtCNB1_3863 [Comamonas testosteroni CNB-2]
 gi|262210511|gb|ACY34609.1| conserved hypothetical protein [Comamonas testosteroni CNB-2]
          Length = 212

 Score =  243 bits (620), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 121/210 (57%), Positives = 144/210 (68%), Gaps = 2/210 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIF TLQGEGG AG  AVFCRF+GCNLW+GREQDR  A C+FCDTDFVG  GT GG
Sbjct: 3   YSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWTGREQDRPKAICQFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++   D+LA+ I  QW   +   R  VLTGGEPLLQVD  LI AL+ RGF I+VE+NGT+
Sbjct: 63  KFATADELAERILGQWPADDSRHRMVVLTGGEPLLQVDQALIAALHVRGFRISVESNGTV 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY-IGFDFERFSLQPMDGPFL 181
             P+GIDW+C+SPKAG D   + GQELKLV+PQ            +F+ + LQPMD    
Sbjct: 123 AAPEGIDWLCISPKAGADWIQRSGQELKLVWPQPTFDLAAIEASTEFQHYFLQPMDNAQQ 182

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             N    I+ C Q P WRLS+QTHK  GIR
Sbjct: 183 SSNIAACIAQCMQRPGWRLSLQTHKLTGIR 212


>gi|89901390|ref|YP_523861.1| organic radical activating-like protein [Rhodoferax ferrireducens
           T118]
 gi|89346127|gb|ABD70330.1| Organic radical activating enzymes-like [Rhodoferax ferrireducens
           T118]
          Length = 211

 Score =  243 bits (620), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 110/208 (52%), Positives = 145/208 (69%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIF TLQGEG HAGR AVFCRF+GCNLWSG E  R SA C+FCDTDFVG  G  GG
Sbjct: 3   YSVKEIFYTLQGEGHHAGRPAVFCRFAGCNLWSGAEDSRASAVCQFCDTDFVGTDGEGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ + + LA  I + W       +Y V TGGEPLLQ++  LI A++  GFE+A+ETNGT+
Sbjct: 63  KFRDAETLAAAINQLWPASYPASKYVVFTGGEPLLQLNAALIDAMHDAGFEVAIETNGTL 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+G+DW+CVSPK G  L ++ G E+K+V PQ     ++Y    F+ + +Q MDGP  +
Sbjct: 123 PVPEGVDWVCVSPKMGSALVVRAGNEIKVVIPQAGQVLDDYACLAFDHYFVQAMDGPLQK 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           EN  +AI YC  +P+W+LS+QTHK + I
Sbjct: 183 ENLRMAIDYCKAHPQWKLSLQTHKLLQI 210


>gi|41019307|gb|AAR98565.1| GntS [Micromonospora echinospora]
          Length = 212

 Score =  243 bits (620), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 117/211 (55%), Positives = 140/211 (66%), Gaps = 3/211 (1%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y IKEIF TLQGEG HAGR AVFCRF+ CNLW+GRE++R  A CRFCDTDFVG  G  G
Sbjct: 1   MYRIKEIFYTLQGEGTHAGRPAVFCRFTSCNLWTGREEERYRAICRFCDTDFVGTDGPGG 60

Query: 63  GRYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           GR+               G+   R   Y V TGGEPLLQ+D   + AL+  GFE+AVETN
Sbjct: 61  GRFGTAAELAAAVAAAWQGQAHPRSRPYVVCTGGEPLLQLDEAAVSALHDAGFEVAVETN 120

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GT   P GIDW CVSPKAG ++ +  G +LKLV+PQ    P  +   DF  F LQPMDGP
Sbjct: 121 GTRPAPPGIDWTCVSPKAGAEVVLTRGDDLKLVYPQPGAEPARFEHLDFTHFMLQPMDGP 180

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               NT  A+ YC ++P+WRLS+QTHK+IGI
Sbjct: 181 DRVANTEAAVRYCLEHPQWRLSLQTHKYIGI 211


>gi|87308581|ref|ZP_01090721.1| hypothetical protein DSM3645_14515 [Blastopirellula marina DSM
           3645]
 gi|87288673|gb|EAQ80567.1| hypothetical protein DSM3645_14515 [Blastopirellula marina DSM
           3645]
          Length = 211

 Score =  242 bits (618), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 118/208 (56%), Positives = 144/208 (69%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +KEI+ TLQGEG  +GR AVFCRF+GCNLWSGREQDR SA C+FCDT FVG  G  GG
Sbjct: 3   YFVKEIYYTLQGEGAKSGRPAVFCRFTGCNLWSGREQDRASAICQFCDTQFVGTDGPGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
            + +  +LA  +  +W       +  V TGGEPLLQ+D  +I+AL+  GFE+AVETNGT 
Sbjct: 63  VFRSALELAGAVAAKWPESWNANKMVVCTGGEPLLQLDEAVIEALHDEGFEVAVETNGTK 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
            PP GIDWI VSPKA  +  ++ G ELKLVFPQ    P  Y   DF+ F LQPMDG   E
Sbjct: 123 IPPPGIDWISVSPKANAECILRAGDELKLVFPQPGGEPTKYENLDFDHFFLQPMDGLSRE 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +NT LA  YC ++P+W LS+QTHK IG+
Sbjct: 183 QNTQLAAQYCLKHPQWELSIQTHKLIGL 210


>gi|85814032|emb|CAF31448.1| putative gentamicin production protein [Micromonospora echinospora]
          Length = 215

 Score =  242 bits (618), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 117/211 (55%), Positives = 140/211 (66%), Gaps = 3/211 (1%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y IKEIF TLQGEG HAGR AVFCRF+ CNLW+GRE++R  A CRFCDTDFVG  G  G
Sbjct: 4   VYRIKEIFYTLQGEGTHAGRPAVFCRFTSCNLWTGREEERYRAICRFCDTDFVGTDGPGG 63

Query: 63  GRYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           GR+               G+   R   Y V TGGEPLLQ+D   + AL+  GFE+AVETN
Sbjct: 64  GRFGTAAELAAAVAAAWQGQAHPRSRPYVVCTGGEPLLQLDEAAVSALHDAGFEVAVETN 123

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GT   P GIDW CVSPKAG ++ +  G +LKLV+PQ    P  +   DF  F LQPMDGP
Sbjct: 124 GTRPAPPGIDWTCVSPKAGAEVVLTRGDDLKLVYPQPGAEPARFEHLDFTHFMLQPMDGP 183

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               NT  A+ YC ++P+WRLS+QTHK+IGI
Sbjct: 184 DRVANTEAAVRYCLEHPQWRLSLQTHKYIGI 214


>gi|224038930|gb|ACN38359.1| putative sisomicin production protein [Micromonospora inyonensis]
          Length = 215

 Score =  242 bits (617), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 117/211 (55%), Positives = 141/211 (66%), Gaps = 3/211 (1%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y IKEIF TLQGEG HAGR AVFCRF+ CNLW+GRE+DR  A C+FCDTDFVG  G  G
Sbjct: 4   VYRIKEIFYTLQGEGTHAGRPAVFCRFTSCNLWTGREEDRHRAICQFCDTDFVGTDGPGG 63

Query: 63  GRYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           GR+               G+   R   Y V TGGEPLLQ+D   + AL++ GFE+AVETN
Sbjct: 64  GRFATAAELAAAVATAWRGQAHPRSRPYVVCTGGEPLLQLDEAAVAALHEAGFEVAVETN 123

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GT   P G+DW+CVSPKAG DL +  G +LKLV+PQ    P  +   DF  F LQPMDGP
Sbjct: 124 GTRPAPPGLDWVCVSPKAGADLVLTRGDDLKLVYPQPGAEPGRFEHLDFTHFMLQPMDGP 183

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               NT  A+ YC ++P+WR S+QTHK+IGI
Sbjct: 184 DRVANTEAAVRYCLEHPQWRFSLQTHKYIGI 214


>gi|89093158|ref|ZP_01166108.1| hypothetical protein MED92_03737 [Oceanospirillum sp. MED92]
 gi|89082454|gb|EAR61676.1| hypothetical protein MED92_03737 [Oceanospirillum sp. MED92]
          Length = 210

 Score =  242 bits (617), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 113/209 (54%), Positives = 141/209 (67%), Gaps = 1/209 (0%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +YS+KEIF +LQGEG  +GR ++FCRF+GCNLWSGREQDR  A C FCDTDF+G  G  G
Sbjct: 1   MYSVKEIFFSLQGEGAQSGRASIFCRFAGCNLWSGREQDREKAVCDFCDTDFIGTDGQNG 60

Query: 63  GRYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           G++   Q L + ++E W        Y + TGGEP LQ+D  LI   ++ GFE+AVETNGT
Sbjct: 61  GKFETAQALCNFLQEFWPNNSSIPPYIIFTGGEPALQLDQDLIDCCHEYGFEVAVETNGT 120

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
              P GIDW+CVSPKA  +L I  G ELKLV+PQ    PE +   +F  F LQPMDGP  
Sbjct: 121 KPLPSGIDWVCVSPKADAELVITKGDELKLVYPQALAMPEKFASLNFRHFYLQPMDGPAR 180

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +  T   I YC Q+PKW+LS+Q HK +GI
Sbjct: 181 QLYTKEVIDYCLQHPKWKLSLQNHKVLGI 209


>gi|300023287|ref|YP_003755898.1| radical SAM protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525108|gb|ADJ23577.1| Radical SAM domain protein [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 208

 Score =  242 bits (617), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 121/209 (57%), Positives = 143/209 (68%), Gaps = 3/209 (1%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR  A C+FCDTDFVG  G  G
Sbjct: 1   MYAVKEIFYTLQGEGTNAGRPAVFCRFAGCNLWTGREVDRAKAVCQFCDTDFVGTDGEGG 60

Query: 63  GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           GR+   D LA         G       VLTGGEP+LQVD  L+ AL+ RGF IA+ETNGT
Sbjct: 61  GRFRTADDLARACRA--ACGSDGDMLVVLTGGEPMLQVDQELVDALHARGFTIAIETNGT 118

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           +   + IDWICVSPKAG  L+ K G ELKLV+PQ  V P +Y    F+   LQPMDG   
Sbjct: 119 LPVLETIDWICVSPKAGSQLQQKHGHELKLVYPQEGVDPADYADLAFQTRFLQPMDGATR 178

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E NT  A++YC  NP WRLS+QTHK +GI
Sbjct: 179 EANTQAAVAYCKANPGWRLSLQTHKLLGI 207


>gi|46203559|ref|ZP_00209018.1| COG0602: Organic radical activating enzymes [Magnetospirillum
           magnetotacticum MS-1]
          Length = 229

 Score =  241 bits (616), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 120/207 (57%), Positives = 141/207 (68%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE+F TLQGEG  AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG+ G  GG
Sbjct: 22  YAVKELFHTLQGEGAQAGRAAVFCRFAGCNLWSGREEDRAGAACRFCDTDFVGLDGEGGG 81

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R+   +           G    RY V TGGEPLLQ+D  LI A++ RGFE+AVETNGT+ 
Sbjct: 82  RFASAEALAGAIAATWAGGAAHRYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGTLA 141

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
            P GIDWICVSPKAG  L    G ELKLV+PQ   +PE +    F    LQPMDGP    
Sbjct: 142 APPGIDWICVSPKAGNALIQTSGDELKLVYPQAEAAPELFADLPFRHRFLQPMDGPEAAA 201

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
           NT  A++YC  + +WRLS+QTHK IGI
Sbjct: 202 NTAAAVAYCRADARWRLSLQTHKIIGI 228


>gi|315499628|ref|YP_004088431.1| radical sam domain protein [Asticcacaulis excentricus CB 48]
 gi|315417640|gb|ADU14280.1| Radical SAM domain protein [Asticcacaulis excentricus CB 48]
          Length = 216

 Score =  241 bits (616), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 118/215 (54%), Positives = 145/215 (67%), Gaps = 6/215 (2%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +YS KEIFLTLQGEGG AGRVAVF RF+GCNLWSGREQDR +A C FCDTDFVG  G  G
Sbjct: 2   VYSFKEIFLTLQGEGGQAGRVAVFARFAGCNLWSGREQDRATAACTFCDTDFVGTDGEGG 61

Query: 63  GRYNVDQLA-DLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           G+++  + A   ++  W   +   +  V TGGEPLLQ+D PLI A+   G+ IAVE+NGT
Sbjct: 62  GKFDTPEAAVAALDAHWGQIDPAHKSVVFTGGEPLLQLDAPLIAAVKSAGYFIAVESNGT 121

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD---- 177
           +  P GIDW+C+SPK    L    GQELKLV+PQ  V P  +   DFERF LQP D    
Sbjct: 122 LRAPIGIDWLCISPKGENRLHQTSGQELKLVWPQDRVDPAEFARMDFERFYLQPKDPLDQ 181

Query: 178 GPFLE-ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            P +   +T   I YC  +P+WR+SVQTHK +G+R
Sbjct: 182 NPAMRAAHTQAVIDYCLAHPQWRMSVQTHKVVGVR 216


>gi|329902674|ref|ZP_08273228.1| Queuosine Biosynthesis QueE Radical SAM [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548646|gb|EGF33296.1| Queuosine Biosynthesis QueE Radical SAM [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 207

 Score =  241 bits (616), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 114/206 (55%), Positives = 142/206 (68%), Gaps = 1/206 (0%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           +KEIF TLQGEG HAGR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG  G  GG++
Sbjct: 1   MKEIFYTLQGEGTHAGRPAVFCRFAGCNLWSGRESDRATAVCQFCDTDFVGTDGVMGGKF 60

Query: 66  -NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
            + + LA  +   W       ++ V+TGGEP+LQ+D+ LI AL+ +GF IA+ETNGT+  
Sbjct: 61  ADAESLAATVNSLWPADYPASKFIVITGGEPMLQLDLALIDALHAQGFMIAIETNGTLPV 120

Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
           P  +DWICVSPK G  L  + G ELK+V PQ+      Y   DFE F LQPMD P    N
Sbjct: 121 PPEVDWICVSPKMGSKLVQRSGNELKVVIPQLGQDLLMYEALDFEHFYLQPMDSPTAARN 180

Query: 185 TNLAISYCFQNPKWRLSVQTHKFIGI 210
           T  AI +C ++PKW+LSVQTHK + I
Sbjct: 181 TERAIDHCKRHPKWKLSVQTHKILQI 206


>gi|326795520|ref|YP_004313340.1| radical SAM protein [Marinomonas mediterranea MMB-1]
 gi|326546284|gb|ADZ91504.1| Radical SAM domain protein [Marinomonas mediterranea MMB-1]
          Length = 216

 Score =  240 bits (613), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 113/216 (52%), Positives = 147/216 (68%), Gaps = 9/216 (4%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y++KE F +LQGEG HAGR A+FCRF+GCNLWSG+E+ RLSA C+FCDTDF G+ G  G
Sbjct: 1   MYNVKESFYSLQGEGAHAGRPAIFCRFTGCNLWSGKEKHRLSADCQFCDTDFNGVNGQNG 60

Query: 63  GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           GR+ + D+LA  I  QW  G    +Y V TGGEP LQ+D  LI A+   GF +A+ETNGT
Sbjct: 61  GRFKSADELAKHIANQWPQGHGN-KYVVFTGGEPALQLDQALISAVKSYGFMVAIETNGT 119

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           +  P  IDWICVSPK    L +  G ELK V+PQ N++P++Y G +FE F LQPMD   +
Sbjct: 120 LRLPDNIDWICVSPKTTDPLVVNAGNELKFVYPQTNLNPKDYEGLEFEHFYLQPMDLSAV 179

Query: 182 EENTNLA-------ISYCFQNPKWRLSVQTHKFIGI 210
            +   +A       + YC +NP WR+S+QTHK + I
Sbjct: 180 PKQNIIASDTQSATLKYCLENPLWRISLQTHKMLNI 215


>gi|167585085|ref|ZP_02377473.1| organic radical activating enzyme-like protein [Burkholderia
           ubonensis Bu]
          Length = 210

 Score =  240 bits (613), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 118/208 (56%), Positives = 149/208 (71%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAQALCRFCDTDFVGTDGENGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ +   LA  +   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG++
Sbjct: 63  KFKDAAALAAQVASLWPDGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
              + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DF+ F +QPMDGP  +
Sbjct: 122 PVLESIDWICVSPKADVPLVVTKGNELKVVIPQDNQRLADYAKLDFDYFLVQPMDGPSRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 182 LNTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|163856911|ref|YP_001631210.1| hypothetical protein Bpet2600 [Bordetella petrii DSM 12804]
 gi|163260639|emb|CAP42941.1| conserved hypothetical protein [Bordetella petrii]
          Length = 391

 Score =  239 bits (611), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 126/208 (60%), Positives = 148/208 (71%), Gaps = 2/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS KEIF TLQGEG  AGR AVFCRF+GCNLWSGRE DR  A C FCDTDFVG  G  GG
Sbjct: 184 YSTKEIFKTLQGEGAQAGRAAVFCRFAGCNLWSGREADRAGAVCTFCDTDFVGTDGPGGG 243

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ +  QLAD I   W  G ++ RY V TGGEPLLQ+D  L+QA++  GF +A+ETNGT+
Sbjct: 244 KFASAAQLADAIAAAWGPGTQD-RYVVFTGGEPLLQLDAALLQAVHGHGFTVAIETNGTL 302

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDWICVSPK    + I+ G ELKLV+PQ    PE Y   DF+ F LQPMDGP   
Sbjct: 303 PAPAGIDWICVSPKGSARVVIERGHELKLVYPQAEARPEAYAHLDFQHFFLQPMDGPARA 362

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT  A+ YC Q+P+WRLS+QTHK+IGI
Sbjct: 363 ANTQQAVQYCMQHPQWRLSLQTHKYIGI 390


>gi|83649266|ref|YP_437701.1| organic radical activating protein [Hahella chejuensis KCTC 2396]
 gi|83637309|gb|ABC33276.1| Organic radical activating enzyme [Hahella chejuensis KCTC 2396]
          Length = 217

 Score =  238 bits (608), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 117/217 (53%), Positives = 145/217 (66%), Gaps = 10/217 (4%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y +KE F TLQGEG H GR AVFCRFS CNLW+GRE+DR  A C FCDTDF+G+ G  G
Sbjct: 1   MYRVKEAFYTLQGEGAHQGRPAVFCRFSKCNLWTGREKDRAGAVCNFCDTDFIGVDGQNG 60

Query: 63  GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           G++   ++LAD I   W   E++ R+ V TGGEPLLQ+D PLI+A + RGFE+AVETNGT
Sbjct: 61  GKFATAEELADHILAFW-PPEQDNRFVVCTGGEPLLQLDEPLIEAFHARGFEVAVETNGT 119

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           +  P GIDW+CVSPK   ++ I    ELKLV+PQ    PE +      R  L PM  P +
Sbjct: 120 LPAPAGIDWLCVSPKGRAEVVITECDELKLVYPQPEAPPERFSDIRAGRHYLSPMANPLV 179

Query: 182 EE--------NTNLAISYCFQNPKWRLSVQTHKFIGI 210
            E        NT LA+ YC ++PKWRLSVQ HK +GI
Sbjct: 180 REGNDEQKRRNTQLAMEYCMRHPKWRLSVQLHKILGI 216


>gi|326330124|ref|ZP_08196435.1| GntS [Nocardioidaceae bacterium Broad-1]
 gi|325951937|gb|EGD43966.1| GntS [Nocardioidaceae bacterium Broad-1]
          Length = 211

 Score =  238 bits (607), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 115/208 (55%), Positives = 139/208 (66%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +KEIF TLQGEG HAGR AVFCRF+ CNLW+GRE+DR  A C+FCDT FVG  G  GG
Sbjct: 3   YKVKEIFYTLQGEGTHAGRPAVFCRFTSCNLWTGREKDRDRAICKFCDTAFVGTDGEGGG 62

Query: 64  RYNVDQLADLIE-EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++            +W  G       V TGGEPLLQ+D   + A+   GF +AVETNGTI
Sbjct: 63  KFADAAALAAAVASKWPMGTDGQPMVVCTGGEPLLQLDDAAVAAMKAAGFYVAVETNGTI 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
            PP GIDW+CVSPK G DL ++ GQELK V PQ +V P  +   DFE F +QPMDGP L 
Sbjct: 123 LPPAGIDWLCVSPKIGSDLVVESGQELKFVVPQADVDPTTFEALDFESFRVQPMDGPDLA 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT  A+ +C ++P+W LS QTHKF+GI
Sbjct: 183 ANTEYAVKFCLEHPRWHLSTQTHKFLGI 210


>gi|226228044|ref|YP_002762150.1| hypothetical protein GAU_2638 [Gemmatimonas aurantiaca T-27]
 gi|226091235|dbj|BAH39680.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 212

 Score =  237 bits (605), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 118/211 (55%), Positives = 142/211 (67%), Gaps = 4/211 (1%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE F TLQGEG +AGR AVFCRFSGCNLW+GRE DR  A C FCDTDFVG+ G  GG
Sbjct: 3   YTVKECFYTLQGEGVNAGRAAVFCRFSGCNLWTGREADRHKATCTFCDTDFVGV-GPDGG 61

Query: 64  RYNVDQLAD-LIEEQW-ITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           ++         ++ +W +      R + V TGGEPLLQ+D   I AL+  GFEIAVETNG
Sbjct: 62  KFATAAALAAFVKSRWPVDAPGSARPFVVCTGGEPLLQLDEAAIDALHAEGFEIAVETNG 121

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T   P G+DWICVSPKA   + +  G ELKLVFPQ    PE +   +F  F LQPMD P 
Sbjct: 122 TQPAPAGLDWICVSPKADAPVVLTRGDELKLVFPQEQARPERFASLEFAHFLLQPMDDPQ 181

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             ENT  A++YC  +P+WRLSVQTHK +GIR
Sbjct: 182 AAENTRAALAYCLAHPQWRLSVQTHKVLGIR 212


>gi|332188914|ref|ZP_08390617.1| hypothetical protein SUS17_4029 [Sphingomonas sp. S17]
 gi|332011054|gb|EGI53156.1| hypothetical protein SUS17_4029 [Sphingomonas sp. S17]
          Length = 210

 Score =  237 bits (605), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 114/209 (54%), Positives = 146/209 (69%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE+FLTLQGEG  AGR AVF RF+GCNLWSGREQDR SA CRFCDTDFVG+ G  GG
Sbjct: 3   YAVKEMFLTLQGEGVQAGRRAVFVRFAGCNLWSGREQDRASAICRFCDTDFVGVDGLGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+ +   L   +E  W   E+  R+ VLTGGEP+LQVD  L+ AL+  GF IA+E+NGTI
Sbjct: 63  RFADAGALVAAVEGFW-GPERAERFVVLTGGEPMLQVDDALVDALHDAGFFIAIESNGTI 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
                +DW+C+SPKAG ++  + GQELKLV+PQ  + P    G+DF    LQP+D P  E
Sbjct: 122 AAHPRLDWVCISPKAGSEVVQRSGQELKLVWPQAGIDPAEVEGWDFANHLLQPLDDPRAE 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            N    I+   + P+WRL++QTHK +G+R
Sbjct: 182 ANREACIAMVMERPRWRLTLQTHKMLGLR 210


>gi|307545033|ref|YP_003897512.1| hypothetical protein HELO_2443 [Halomonas elongata DSM 2581]
 gi|307217057|emb|CBV42327.1| hypothetical protein HELO_2443 [Halomonas elongata DSM 2581]
          Length = 214

 Score =  236 bits (603), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 117/213 (54%), Positives = 142/213 (66%), Gaps = 5/213 (2%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +YS+KE F +LQGEGG AGR +VFCRF+GCNLWSGRE DR+SA CRFCDTDF G  G  G
Sbjct: 1   MYSVKEAFYSLQGEGGQAGRASVFCRFAGCNLWSGREADRVSAACRFCDTDFRGTDGQNG 60

Query: 63  GRY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GR+ + + LA+ +   W       R   + TGGEPLLQ+D  LI A++ R F++AVETNG
Sbjct: 61  GRFADAETLAEHLVGLWEGAPDGSRPQVIFTGGEPLLQLDDALIAAMHDREFDVAVETNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD-GP 179
           T+  P GIDW+CVSPK    L    G ELKLV PQ    PE + G DF  F LQPMD  P
Sbjct: 121 TLAAPAGIDWLCVSPKGDVPLVQTRGDELKLVHPQPEAPPERFTGLDFRHFFLQPMDTSP 180

Query: 180 FLEENTNLA--ISYCFQNPKWRLSVQTHKFIGI 210
             E    +A  ++YC  NP+WRLS+QTHK  GI
Sbjct: 181 LGETRDTMAATVAYCLANPRWRLSLQTHKIAGI 213


>gi|307293826|ref|ZP_07573670.1| Radical SAM domain protein [Sphingobium chlorophenolicum L-1]
 gi|306879977|gb|EFN11194.1| Radical SAM domain protein [Sphingobium chlorophenolicum L-1]
          Length = 215

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 113/214 (52%), Positives = 148/214 (69%), Gaps = 7/214 (3%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE+FLTLQGEG HAGR AVF RF+GCNLWSGREQDR +A C+FCDTDFVG  G  GG
Sbjct: 3   YAVKELFLTLQGEGVHAGRRAVFLRFAGCNLWSGREQDRATAICQFCDTDFVGTDGDGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ + D LA+     W  G  EGRY VLTGGEP+LQ+D  L+ AL+ RGF IAVE+NGT+
Sbjct: 63  KFADADSLAEAALALWGEG-AEGRYIVLTGGEPMLQIDDALVDALHARGFAIAVESNGTL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----VSPENYIGFDFERFSLQPMD 177
               G+DW+C+SPKAG ++  + G ELKLV+PQ          E+  G+ F+   +QP+D
Sbjct: 122 PAHPGLDWVCISPKAGSEVVQRSGNELKLVWPQPGQGHGIADVEDMEGWAFDHLLVQPLD 181

Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            P    N   A+      P+WRLS+Q+HK++G+R
Sbjct: 182 DPDAARNAQAAVDLVLARPRWRLSLQSHKYLGLR 215


>gi|83309346|ref|YP_419610.1| organic radical activating protein [Magnetospirillum magneticum
           AMB-1]
 gi|82944187|dbj|BAE49051.1| Organic radical activating enzyme [Magnetospirillum magneticum
           AMB-1]
          Length = 202

 Score =  235 bits (599), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 116/208 (55%), Positives = 148/208 (71%), Gaps = 10/208 (4%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y+++EIF +LQGEG  AGR AVF RF+GCNLWSGRE DR +A CRFCDTDFVG     G 
Sbjct: 3   YTVREIFHSLQGEGVQAGRPAVFLRFAGCNLWSGREADRETATCRFCDTDFVG-----GE 57

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +Y +   LA+ ++   + G    RY V+TGGEP LQ+D  L++AL+  GFE+A+ETNGT+
Sbjct: 58  KYPDAQGLAEAVKA--VGGAT--RYVVVTGGEPGLQLDGALVEALHGLGFEVAIETNGTV 113

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           E P G+DW+CVSPKAG  LK+  G ELKLVFPQ    P ++   DF  F LQPMDGP  +
Sbjct: 114 ELPSGLDWVCVSPKAGTTLKVTRGDELKLVFPQAGAMPGDFEHLDFAYFLLQPMDGPERD 173

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +T  AI +C  +P+WRLS+QTHK +GI
Sbjct: 174 AHTRAAIGHCLTHPRWRLSLQTHKIVGI 201


>gi|260752296|ref|YP_003225189.1| hypothetical protein Za10_0051 [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258551659|gb|ACV74605.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 217

 Score =  234 bits (598), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 114/216 (52%), Positives = 145/216 (67%), Gaps = 7/216 (3%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           + Y++KE FLTLQGEG  AGR AVF RF+GCNLW+GRE DR  A CRFCDTDFVGI G  
Sbjct: 3   RHYAVKESFLTLQGEGIQAGRRAVFIRFAGCNLWNGREDDREQATCRFCDTDFVGIDGEN 62

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRY------CVLTGGEPLLQVDVPLIQALNKRGFEIA 115
           GGR+  ++LA+     W     E RY       VLTGGEPLLQVD  L+ AL  + FEIA
Sbjct: 63  GGRFTAEELAEQAIRLWKEA-IESRYQSVRPFVVLTGGEPLLQVDEALLLALKNQAFEIA 121

Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
           +ETNGT   P  IDW+C+SPKAG  + ++ G E+KLV+PQ  +  E     DF+ + +QP
Sbjct: 122 IETNGTQPAPSAIDWVCMSPKAGSQIILEKGNEIKLVWPQKGIDIEALEKLDFDHYLIQP 181

Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           MD  + +EN   AI++  Q P WRLS+Q+HK IG++
Sbjct: 182 MDDEYQKENIQKAIAFVMQRPLWRLSIQSHKLIGVK 217


>gi|226940051|ref|YP_002795124.1| Organic radical activating enzyme [Laribacter hongkongensis HLHK9]
 gi|226714977|gb|ACO74115.1| Organic radical activating enzyme [Laribacter hongkongensis HLHK9]
          Length = 209

 Score =  234 bits (596), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 119/209 (56%), Positives = 141/209 (67%), Gaps = 3/209 (1%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG H+GR AVFCRF+GCNLWSGRE DR  A C+FCDTDFVG  G  GG
Sbjct: 3   YTVKEIFHTLQGEGVHSGRAAVFCRFTGCNLWSGRETDRAQATCQFCDTDFVGT-GPDGG 61

Query: 64  RYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++    +LA  I + W  G     Y V TGGEPLLQ+D  LI+A++ RGFE+ VETNGTI
Sbjct: 62  KFACARELAGRIADSW-AGTGGTPYVVFTGGEPLLQLDEELIEAMHARGFEVGVETNGTI 120

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDW+CVSPKAG     K G ELKLV+PQ  + PE      F R+ LQPMDGP   
Sbjct: 121 PAPPGIDWLCVSPKAGSGWVQKQGDELKLVYPQPGLLPETVELTGFSRYWLQPMDGPEQT 180

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            +   AI +C  +P W LS+Q HK  GIR
Sbjct: 181 MHIKAAIGFCLLHPDWHLSLQNHKLAGIR 209


>gi|56552191|ref|YP_163030.1| organic radical activating-like protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56543765|gb|AAV89919.1| organic radical activating-like protein [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 217

 Score =  234 bits (596), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 114/214 (53%), Positives = 144/214 (67%), Gaps = 7/214 (3%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE FLTLQGEG  AGR AVF RF+GCNLW+GRE DR  A CRFCDTDFVGI G  GG
Sbjct: 5   YAVKESFLTLQGEGIQAGRRAVFIRFAGCNLWNGREDDREQATCRFCDTDFVGIDGENGG 64

Query: 64  RYNVDQLADLIEEQWITGEKEGRY------CVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           R+  ++LA+     W     E RY       VLTGGEPLLQVD  L+ AL  + FEIA+E
Sbjct: 65  RFTAEELAEQAIRLWKEA-IESRYQSVRPFVVLTGGEPLLQVDEALLLALKNQAFEIAIE 123

Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177
           TNGT   P  IDW+C+SPKAG  + ++ G E+KLV+PQ  +  E     DF+ + +QPMD
Sbjct: 124 TNGTQPVPSAIDWVCMSPKAGSQIILEKGNEIKLVWPQKGIDIEALEKLDFDHYLIQPMD 183

Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             + +EN   AI++  Q P WRLS+Q+HK IG++
Sbjct: 184 DEYQKENIQKAIAFVMQRPLWRLSIQSHKLIGVK 217


>gi|241761735|ref|ZP_04759822.1| organic radical activating enzymes-like protein [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241374043|gb|EER63576.1| organic radical activating enzymes-like protein [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 217

 Score =  234 bits (596), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 114/214 (53%), Positives = 144/214 (67%), Gaps = 7/214 (3%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE FLTLQGEG  AGR AVF RF+GCNLW+GRE DR  A CRFCDTDFVGI G  GG
Sbjct: 5   YAVKESFLTLQGEGIQAGRRAVFIRFAGCNLWNGREDDREQATCRFCDTDFVGIDGENGG 64

Query: 64  RYNVDQLADLIEEQWITGEKEGRY------CVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           R+  ++LA+     W     E RY       VLTGGEPLLQVD  L+ AL  + FEIA+E
Sbjct: 65  RFTAEELAEQAIRLWKEA-LESRYQYVRPFVVLTGGEPLLQVDEALLLALKNQAFEIAIE 123

Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177
           TNGT   P  IDW+C+SPKAG  + ++ G E+KLV+PQ  +  E     DF+ + +QPMD
Sbjct: 124 TNGTQPVPSAIDWVCMSPKAGSQIILEKGNEIKLVWPQKGIDIEALEKLDFDHYLIQPMD 183

Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             + +EN   AI++  Q P WRLS+Q+HK IG++
Sbjct: 184 DEYQKENIQKAIAFVMQRPLWRLSIQSHKLIGVK 217


>gi|311696706|gb|ADP99579.1| organic radical activating enzyme [marine bacterium HP15]
          Length = 218

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 115/219 (52%), Positives = 144/219 (65%), Gaps = 13/219 (5%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y +KE F TLQGEG  AGR AVFCRFS CNLW+GRE+DR +A C FCDTDFVG  G  G
Sbjct: 1   MYRVKEAFYTLQGEGAQAGRAAVFCRFSKCNLWTGREKDRATAVCNFCDTDFVGTDGQNG 60

Query: 63  GRYNV-DQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GR+   ++LA  I   W   E  G+ Y V TGGEPLLQ+D PLI+AL++ GFE+ VETNG
Sbjct: 61  GRFETPEELARHIRNLW--PEAPGKPYVVCTGGEPLLQLDAPLIEALHREGFEVGVETNG 118

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T+  P+GIDW+CVSPKA   + ++   ELKLV+PQ    PE ++G     + L PM  P 
Sbjct: 119 TLPAPEGIDWLCVSPKADAPVVLEACDELKLVYPQPLAMPERFLGIRASHYFLSPMASPS 178

Query: 181 LEE---------NTNLAISYCFQNPKWRLSVQTHKFIGI 210
           + E         NT  A  YC  +P+WRL++Q HK IGI
Sbjct: 179 IPETAVDEIKQSNTRRATDYCLAHPQWRLTLQMHKIIGI 217


>gi|114798300|ref|YP_759262.1| hypothetical protein HNE_0532 [Hyphomonas neptunium ATCC 15444]
 gi|114738474|gb|ABI76599.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444]
          Length = 215

 Score =  232 bits (592), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 122/213 (57%), Positives = 141/213 (66%), Gaps = 7/213 (3%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KE F TLQGEG H GR AVF RF+GCNLWSG E+DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YSVKEAFYTLQGEGAHTGRAAVFLRFAGCNLWSGLERDREKAVCRFCDTDFVGTNGEGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           ++     LA  IE  W      G   Y V TGGEPL+Q+D PLI AL++ GFEIA+ETNG
Sbjct: 63  KFREPGLLAAHIESIWQANASPGGRPYVVCTGGEPLMQLDEPLIGALHEAGFEIAIETNG 122

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV--NVSPENYIGFDFERFSLQPM-D 177
           T+  P  IDWICVSPKA   L  K G ELKLV+PQ      PE +   DFE F LQP  D
Sbjct: 123 TLPAPASIDWICVSPKANAPLAQKSGNELKLVYPQTEPEAQPECFETLDFEHFFLQPRDD 182

Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           GP +     +A +YC +NPKWRLS+QTHK  G+
Sbjct: 183 GPSVSHVAAVA-NYCLKNPKWRLSLQTHKLTGL 214


>gi|294013047|ref|YP_003546507.1| putative organic radical activating enzyme [Sphingobium japonicum
           UT26S]
 gi|292676377|dbj|BAI97895.1| putative organic radical activating enzyme [Sphingobium japonicum
           UT26S]
          Length = 215

 Score =  232 bits (591), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/213 (51%), Positives = 145/213 (68%), Gaps = 5/213 (2%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE+FLTLQGEG HAGR AVF RF+GCNLW+GREQDR SA CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEMFLTLQGEGVHAGRRAVFLRFAGCNLWTGREQDRASAVCRFCDTDFVGTDGDGGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R+                 ++GRY VLTGGEP+LQVD  L+ AL+ RGF IA+E+NGT+ 
Sbjct: 63  RFADADGLADAALALWGEGRDGRYIVLTGGEPMLQVDDALVDALHARGFAIAIESNGTLP 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----VSPENYIGFDFERFSLQPMDG 178
              G+DW+C+SPKAG ++  + G ELKLV+PQ          E+  G+ F+ + +QP+D 
Sbjct: 123 AHPGLDWVCISPKAGSEVVQRSGNELKLVWPQPGQGHSLADVEDMEGWAFDHWLVQPLDD 182

Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           P   +N   A+    + P+WRLS+Q+HK++G+R
Sbjct: 183 PKAADNARAAVELVMERPRWRLSLQSHKYLGLR 215


>gi|114319183|ref|YP_740866.1| radical SAM domain-containing protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114225577|gb|ABI55376.1| Radical SAM domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 209

 Score =  231 bits (589), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 119/208 (57%), Positives = 141/208 (67%), Gaps = 3/208 (1%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+ EI  TLQGEG   GR AVFCRF+GCNLWSGRE  R SA CRFCDT FVG  G+ GG
Sbjct: 3   YSVHEIHYTLQGEGAQTGRPAVFCRFAGCNLWSGREAHRASAICRFCDTAFVGTGGSGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+ + ++LA+ +   W  G +     V TGGEPLLQ+D  LI AL++RGFE+AVETNGT 
Sbjct: 63  RFRSANELAERLAGYWPGGGRP--LVVCTGGEPLLQLDSALIDALHRRGFEVAVETNGTR 120

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P G+DWICVSPKAG  L +  G ELKLV PQ    PE +    F  F LQPMDGP  E
Sbjct: 121 PAPAGLDWICVSPKAGAPLVLTTGDELKLVHPQPGAEPERFQHLAFRHFFLQPMDGPERE 180

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT   + YC  +P+W LS+QTHK +GI
Sbjct: 181 ANTQACVDYCLAHPQWSLSLQTHKLLGI 208


>gi|241766442|ref|ZP_04764315.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
 gi|241363364|gb|EER58879.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
          Length = 211

 Score =  231 bits (589), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 124/218 (56%), Positives = 143/218 (65%), Gaps = 19/218 (8%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIF TLQGEGG AG  AVFCRF+GCNLW+GREQDR  A C+FCDTDFVG  GT GG
Sbjct: 3   YSVKEIFYTLQGEGGQAGTPAVFCRFAGCNLWTGREQDRAQAICQFCDTDFVGTDGTLGG 62

Query: 64  RYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++     LA  I  QW  G    R  VLTGGEPLLQVD  LI AL+ + F IAVE+NGT+
Sbjct: 63  KFETAAALAQSIAAQWPAGAGH-RLVVLTGGEPLLQVDSELIAALHAQQFRIAVESNGTV 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD---------FERFSL 173
             P+GIDW+C+SPKAG     + GQELKLV+PQ         GFD         F    L
Sbjct: 122 AAPEGIDWLCISPKAGAPFVQRSGQELKLVWPQP--------GFDLGALERETHFTHRFL 173

Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           QPMDGP   +NT   I+ C  +P WRLS+QTHK  GIR
Sbjct: 174 QPMDGPLQRQNTAACIAACLAHPAWRLSLQTHKLTGIR 211


>gi|126665591|ref|ZP_01736573.1| Organic radical activating enzyme [Marinobacter sp. ELB17]
 gi|126630219|gb|EBA00835.1| Organic radical activating enzyme [Marinobacter sp. ELB17]
          Length = 218

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 115/218 (52%), Positives = 139/218 (63%), Gaps = 11/218 (5%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y +KE F TLQGEG  AGR AVFCRFS CNLW+GRE+DR +A C FCDTDFVG  G  G
Sbjct: 1   MYRVKEAFYTLQGEGAQAGRAAVFCRFSKCNLWTGREKDRATAVCDFCDTDFVGTDGQNG 60

Query: 63  GRYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           G +   + LA  I   W     +  Y V TGGEPLLQ+D PLI AL++ GFEI VETNGT
Sbjct: 61  GVFATPEALAAHIAGLWPVAPGK-PYVVCTGGEPLLQLDSPLINALHQAGFEIGVETNGT 119

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           +  P GIDW+CVSPKA   + I+   ELKLV+PQ+   PE ++    + F L PM  P +
Sbjct: 120 LPAPAGIDWLCVSPKADAPVVIERCNELKLVYPQLKAMPERFLHIQADHFFLSPMASPSV 179

Query: 182 EE---------NTNLAISYCFQNPKWRLSVQTHKFIGI 210
            E         NT  A  YC  NP+WRL++Q HK IGI
Sbjct: 180 PETSTDVIKQSNTRRATDYCLANPRWRLTLQMHKIIGI 217


>gi|152996126|ref|YP_001340961.1| hypothetical protein Mmwyl1_2104 [Marinomonas sp. MWYL1]
 gi|150837050|gb|ABR71026.1| conserved hypothetical protein [Marinomonas sp. MWYL1]
          Length = 216

 Score =  227 bits (579), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 108/216 (50%), Positives = 140/216 (64%), Gaps = 9/216 (4%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +YSIKE F +LQGEG HAGR A+FCRF+GCNLWSG E+ R +++C+FCDTDF+G  G  G
Sbjct: 1   MYSIKEAFYSLQGEGAHAGRPALFCRFTGCNLWSGSEKTRATSECQFCDTDFIGTNGQHG 60

Query: 63  GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           G++    QL   ++  W  G+   +Y V TGGEP LQ+D  +I  +   G+ IA+ETNGT
Sbjct: 61  GKFKTAGQLRTHLDALWPVGQGH-KYVVFTGGEPALQLDNAIISEMKLYGYTIAIETNGT 119

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           I  P GIDWICVSPK    L +  G ELKLV+PQ ++SPE +   DF  F LQPMD   L
Sbjct: 120 IALPDGIDWICVSPKTNKPLVVNKGDELKLVYPQSHLSPELFEALDFTNFYLQPMDQSHL 179

Query: 182 E-------ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                   +     + YC  +P+WRLS+QTHK + I
Sbjct: 180 TAEQIPLLDTQQATLHYCLSHPRWRLSLQTHKMLNI 215


>gi|87122356|ref|ZP_01078237.1| hypothetical protein MED121_00365 [Marinomonas sp. MED121]
 gi|86162331|gb|EAQ63615.1| hypothetical protein MED121_00365 [Marinomonas sp. MED121]
          Length = 216

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 106/215 (49%), Positives = 139/215 (64%), Gaps = 7/215 (3%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +YSIKE F +LQGEG  AGR ++FCRFSGCNLW+G+E  R  + C+FCDTDF+G+ G  G
Sbjct: 1   MYSIKEAFYSLQGEGAQAGRPSIFCRFSGCNLWNGKETHRFDSLCQFCDTDFIGVDGQNG 60

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           G++   +   L  +     ++  +Y V TGGEP LQ+D  LI A+ + G+ I +ETNGT 
Sbjct: 61  GKFKQAKTLALHLDALWPNDQSDKYVVFTGGEPALQLDAALILAMKEMGYVIGIETNGTK 120

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL- 181
             P GIDWICVSPK   +L I+ G ELKLV+PQ +++P  Y   DF+ F LQPMD   L 
Sbjct: 121 PLPDGIDWICVSPKTADELVIQQGHELKLVYPQSHLNPNKYTHLDFDTFYLQPMDQSHLP 180

Query: 182 ------EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                 E      ++YC  NPKWRLS+QTHK + I
Sbjct: 181 KDRISPESTLKQTLNYCLANPKWRLSLQTHKILEI 215


>gi|120553050|ref|YP_957401.1| organic radical activating enzyme [Marinobacter aquaeolei VT8]
 gi|120322899|gb|ABM17214.1| organic radical activating enzyme [Marinobacter aquaeolei VT8]
          Length = 218

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 113/219 (51%), Positives = 142/219 (64%), Gaps = 13/219 (5%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y +KE F TLQGEG  AGR AVFCRFS CNLW+GRE+DR +A C FCDTDFVG  G  G
Sbjct: 1   MYRVKEAFYTLQGEGAQAGRAAVFCRFSKCNLWTGREKDRANAVCNFCDTDFVGTDGQNG 60

Query: 63  GRYNV-DQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GR++  + LA  I   W   +  GR Y V TGGEPLLQ+D PLI+A ++ GFE+ VETNG
Sbjct: 61  GRFDTPEALAAHIRSLW--PDAPGRPYVVCTGGEPLLQLDEPLIRAFHRAGFEVGVETNG 118

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T+  P+GIDW+CVSPKA  ++ I    ELKLV+PQ    PE ++      + L PM  P 
Sbjct: 119 TLPAPEGIDWLCVSPKADAEVVIAECDELKLVYPQPLAPPERFLHIRARHYFLSPMASPS 178

Query: 181 LEE---------NTNLAISYCFQNPKWRLSVQTHKFIGI 210
           + E         NT  A  YC  +P+WRL++Q HK +GI
Sbjct: 179 VPEGGPDAIKQSNTRKATDYCLAHPQWRLTLQMHKILGI 217


>gi|46200887|ref|ZP_00056296.2| COG0602: Organic radical activating enzymes [Magnetospirillum
           magnetotacticum MS-1]
          Length = 202

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 118/208 (56%), Positives = 147/208 (70%), Gaps = 10/208 (4%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y+++EIF +LQGEG  AGR AVF RFSGCNLWSGR++DR  A CRFCDTDFVG     G 
Sbjct: 3   YTVREIFHSLQGEGVQAGRAAVFLRFSGCNLWSGRQEDRAKAVCRFCDTDFVG-----GV 57

Query: 64  RYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +Y+  Q LA+ ++   + G    RY V+TGGEP LQ+D  LI AL+  GF +AVETNGT+
Sbjct: 58  KYSDAQSLAEAVKA--VGGST--RYVVVTGGEPGLQLDETLIHALHGLGFSVAVETNGTL 113

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P G+DW+CVSPKAG +L +  G ELKLVFPQ   +PE +   DF  F LQPMDGP   
Sbjct: 114 GLPSGLDWVCVSPKAGTELMVTRGDELKLVFPQDGAAPEAFEHLDFAHFLLQPMDGPDRA 173

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT  AI++C  +P+WRLS+QTHK +GI
Sbjct: 174 ANTAAAIAHCLTHPRWRLSLQTHKIVGI 201


>gi|94495452|ref|ZP_01302032.1| hypothetical protein SKA58_05370 [Sphingomonas sp. SKA58]
 gi|94424840|gb|EAT09861.1| hypothetical protein SKA58_05370 [Sphingomonas sp. SKA58]
          Length = 215

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 111/213 (52%), Positives = 138/213 (64%), Gaps = 5/213 (2%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE+FLTLQGEG  AGR AVF RF+GCNLWSGREQDR SA CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEMFLTLQGEGVQAGRRAVFLRFAGCNLWSGREQDRASAVCRFCDTDFVGTDGLGGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           ++   +              EGRY VLTGGEP+LQVD  L+ AL+ RGF IA+E+NGT+ 
Sbjct: 63  KFADAEALADAALGLWGEGAEGRYIVLTGGEPMLQVDDALVDALHDRGFTIAIESNGTLA 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----VSPENYIGFDFERFSLQPMDG 178
              GIDWICVSPKAG D+  + G ELKLV+PQ          +    + F    +QP+D 
Sbjct: 123 AHPGIDWICVSPKAGSDVVQRSGHELKLVWPQPGGGHSLADVDAMARWAFAHHLIQPLDD 182

Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               +N   AI+     P+WRL+VQ HK++G+R
Sbjct: 183 AHAPDNARAAIALVMDRPQWRLTVQAHKYLGLR 215


>gi|78485139|ref|YP_391064.1| hypothetical protein Tcr_0794 [Thiomicrospira crunogena XCL-2]
 gi|78363425|gb|ABB41390.1| conserved hypothetical protein [Thiomicrospira crunogena XCL-2]
          Length = 218

 Score =  223 bits (569), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 109/215 (50%), Positives = 143/215 (66%), Gaps = 8/215 (3%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y IKE F +LQGEG H+GR A+FCRF+ CNLW+GRE DR +A C+FCDTDF+G  G  GG
Sbjct: 3   YRIKEAFYSLQGEGFHSGRPAIFCRFTNCNLWTGREADRSNAVCQFCDTDFLGTDGQNGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGR----YCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
            + + D LA  +   W T + +      + VLTGGEPLLQVD  LI   ++ GFEIAVET
Sbjct: 63  SFKDADSLAKHLLALWPTDKNDQACPHPFVVLTGGEPLLQVDQTLIDVFHQHGFEIAVET 122

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
           NGT + P+ IDWICVSPKA   L +  G ELKLV+PQ  + P+     +F+ F LQ MD 
Sbjct: 123 NGTQKAPKNIDWICVSPKANAPLILDSGDELKLVYPQTELRPKQVETLNFKHFYLQAMDD 182

Query: 179 P---FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                 E+N    ++YC ++P+W+LS+QTHK +G+
Sbjct: 183 ADPDIQEKNLKETLAYCLKHPQWKLSLQTHKILGV 217


>gi|170744629|ref|YP_001773284.1| radical SAM domain-containing protein [Methylobacterium sp. 4-46]
 gi|168198903|gb|ACA20850.1| Radical SAM domain protein [Methylobacterium sp. 4-46]
          Length = 210

 Score =  222 bits (566), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 116/207 (56%), Positives = 141/207 (68%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG  AGR AVFCRF+GCNLWSGRE DR  A C FCDTDFVG  G  GG
Sbjct: 3   YAVKEIFHTLQGEGAQAGRAAVFCRFAGCNLWSGREADRAEAVCHFCDTDFVGTDGAGGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R+   +           G     + V TGGEPLLQ+D  L+ A+  RGF  AVETNGT E
Sbjct: 63  RFPDAEALAAAIAAAWEGGPRNHFVVFTGGEPLLQLDAALLAAVRARGFAAAVETNGTQE 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
            P+G+DWICVSPKAG  L++  G ELKLV+PQ  ++PE+  G DF  F LQPMDGP    
Sbjct: 123 APEGLDWICVSPKAGAPLRLTRGDELKLVYPQAGLAPEDVAGLDFRHFFLQPMDGPDRAA 182

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +   A+++C ++ +WRLS+QTHK IGI
Sbjct: 183 HLAAAVAHCRRDARWRLSLQTHKLIGI 209


>gi|171463302|ref|YP_001797415.1| Radical SAM domain protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192840|gb|ACB43801.1| Radical SAM domain protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 198

 Score =  222 bits (565), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 112/198 (56%), Positives = 139/198 (70%), Gaps = 8/198 (4%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y++KE F  LQGEG HAGR AVFCRF+GCNLWSGRE+DR +A C+FCDTDFVG  G  G
Sbjct: 1   MYTVKEPFPILQGEGAHAGRAAVFCRFAGCNLWSGREEDRGAAICQFCDTDFVGSDGLGG 60

Query: 63  GRY-NVDQLADLIEEQW--ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           G++   + LAD IE  W   +   + RY V TGGEPLLQ+D  LI AL+++GF +A+ETN
Sbjct: 61  GKFETANALADAIESSWRSTSAGPQQRYVVFTGGEPLLQLDDELIAALHQKGFAVAIETN 120

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS-----LQ 174
           GTI+ P+GIDW+CVSPKAG +L +    ELKLV PQ + S    I   FE+       LQ
Sbjct: 121 GTIKIPKGIDWVCVSPKAGSELIVLQADELKLVVPQQDHSELEKIVARFEKMDYRNRFLQ 180

Query: 175 PMDGPFLEENTNLAISYC 192
           PMDGP L+ NT LA+S C
Sbjct: 181 PMDGPGLKSNTELAVSLC 198


>gi|149377359|ref|ZP_01895104.1| Organic radical activating enzyme [Marinobacter algicola DG893]
 gi|149358371|gb|EDM46848.1| Organic radical activating enzyme [Marinobacter algicola DG893]
          Length = 218

 Score =  220 bits (560), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 110/219 (50%), Positives = 137/219 (62%), Gaps = 13/219 (5%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y +KE F TLQGEG  AGR AVFCRFS CNLW+GRE+DR +A C FCDTDFVG  G  G
Sbjct: 1   MYRVKEAFYTLQGEGAQAGRAAVFCRFSKCNLWTGREKDRANAVCSFCDTDFVGTDGQNG 60

Query: 63  GRY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           G++   D LA  I   W   +  GR Y V TGGEPLLQ+D  L+ A ++ GFE+ VETNG
Sbjct: 61  GQFETADALAAHIRRLW--PDAPGRPYVVCTGGEPLLQLDDQLVDAFHRAGFEVGVETNG 118

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T+  P GIDW+CVSPKA   + ++   ELK+V+PQ    PE +       + L PM  P 
Sbjct: 119 TLPAPSGIDWLCVSPKADAPVVLRQCDELKVVYPQPLAMPERFTDIQASHYFLSPMASPT 178

Query: 181 LEE---------NTNLAISYCFQNPKWRLSVQTHKFIGI 210
           + E         NT  A  YC  +P+WRL++Q HK IGI
Sbjct: 179 VSEGEPDPIKQSNTRKATDYCLTHPRWRLTLQMHKIIGI 217


>gi|149926775|ref|ZP_01915035.1| hypothetical protein LMED105_08825 [Limnobacter sp. MED105]
 gi|149824704|gb|EDM83920.1| hypothetical protein LMED105_08825 [Limnobacter sp. MED105]
          Length = 216

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 109/215 (50%), Positives = 140/215 (65%), Gaps = 5/215 (2%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y++KE+F TLQGEG  AGR AVFCRF+GCNLW+GRE+DR +A C+FCDTDFVG  G 
Sbjct: 1   MATYTVKEMFYTLQGEGAQAGRAAVFCRFAGCNLWTGREEDRATAVCKFCDTDFVGTDGV 60

Query: 61  KGGRY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
            GG++ +   LA  I + +  G    + Y V TGGEP LQ+D  LI A++ +GFEIA+ET
Sbjct: 61  GGGKFKDAVALAQAIADTYQGGLGTAKPYVVFTGGEPTLQLDSALIDAVHAQGFEIAIET 120

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
           NGT+  P+G+DWICVSPK G +L    G ELK+V PQ+           F+ + +Q MD 
Sbjct: 121 NGTLPVPEGVDWICVSPKFGSELVQTRGHELKVVVPQLGQDLNALGQLQFDHYFVQAMDD 180

Query: 179 ---PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                  +N   AI  C   P+WRLSVQTHK IG+
Sbjct: 181 TDPAKKAKNMQAAIQTCLNKPQWRLSVQTHKVIGM 215


>gi|88800853|ref|ZP_01116408.1| Organic radical activating enzyme [Reinekea sp. MED297]
 gi|88776426|gb|EAR07646.1| Organic radical activating enzyme [Reinekea sp. MED297]
          Length = 217

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 105/215 (48%), Positives = 140/215 (65%), Gaps = 9/215 (4%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KE+F TLQGEG H GR AVFCRFSGCNLW+GRE+DR ++ CRFCDTDFVG  G  GG
Sbjct: 3   YSVKEMFYTLQGEGFHTGRPAVFCRFSGCNLWNGREKDRATSICRFCDTDFVGTDGQNGG 62

Query: 64  RYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++    +LA  I + W   ++  R+ V TGGEP LQ+D  LI AL+  GFE AVE+NGT+
Sbjct: 63  KFREARELAQRIADFW-PADQAHRFVVFTGGEPALQLDETLIAALHDVGFECAVESNGTL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD----- 177
             P  +DW+C+SPK   ++ I+   ELKLVFPQ +  PE +     +   L P++     
Sbjct: 122 PLPPSLDWVCISPKGSAEVVIEACDELKLVFPQADAQPERFSHIHAQHRFLSPLNDWTQA 181

Query: 178 --GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              P    NT   + YC ++P+WRL++QTHK + I
Sbjct: 182 QLSPAQNNNTQACVQYCLEHPQWRLTLQTHKVLNI 216


>gi|317486302|ref|ZP_07945134.1| radical SAM domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316922472|gb|EFV43726.1| radical SAM domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 218

 Score =  216 bits (549), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 111/213 (52%), Positives = 137/213 (64%), Gaps = 7/213 (3%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +KEIF TLQGEG  AGR AVFCRFSGCNLWSGR +DR +A+CRFCDTDFVG     G 
Sbjct: 8   YRVKEIFYTLQGEGAQAGRPAVFCRFSGCNLWSGRPEDRATAKCRFCDTDFVGADA--GV 65

Query: 64  RYNVDQLADLIEEQWITGEKE---GR--YCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
               ++LA  I   +     +   GR  Y V TGGEP LQ+   LI  L+  GFE+ VE+
Sbjct: 66  FATAEELAQTIAATFPVLAPQAYGGRKPYIVFTGGEPALQLTRELIDRLHALGFELGVES 125

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
           NGT+  P+G+DWI VSPK    L    G ELKLV+PQ   SPE++   DF  F LQP D 
Sbjct: 126 NGTLPLPEGLDWITVSPKGSNPLATTSGHELKLVWPQQGCSPEDFEDLDFRHFLLQPCDD 185

Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           P  + NT   I+YC  +P+W L +QTHK++G+R
Sbjct: 186 PRNKANTRECIAYCLLHPRWSLGLQTHKWVGVR 218


>gi|120601647|ref|YP_966047.1| hypothetical protein Dvul_0597 [Desulfovibrio vulgaris DP4]
 gi|120561876|gb|ABM27620.1| conserved hypothetical protein [Desulfovibrio vulgaris DP4]
          Length = 216

 Score =  214 bits (544), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 109/213 (51%), Positives = 135/213 (63%), Gaps = 6/213 (2%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +KEIF TLQGEG  AGR AVFCRFSGCNLW+GR QDR +A C FCDTDFVG  G  GG
Sbjct: 3   YRVKEIFHTLQGEGMRAGRAAVFCRFSGCNLWTGRAQDRPAAVCPFCDTDFVGTDGPGGG 62

Query: 64  RYNVDQLADLIEEQ---WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
            +               + TGE    Y V TGGEP LQ+D PLI  L+  G E+A+ETNG
Sbjct: 63  VFEDAATLAAAILAAFPYKTGEGYRPYVVFTGGEPALQLDRPLIDILHAHGCEVAIETNG 122

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG-- 178
           T+  P+GIDW+ VSPKAG  L +  G ELKLV+PQ  + PE+Y    F    +QP DG  
Sbjct: 123 TVRLPEGIDWVTVSPKAGTRLAVTSGDELKLVWPQQGICPESYESLAFTYLLMQPRDGLG 182

Query: 179 -PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                +  + A+ +C  +P+WRL +QTHK++GI
Sbjct: 183 DAGRGDAESEAVRWCLAHPRWRLCLQTHKYLGI 215


>gi|121997906|ref|YP_001002693.1| radical SAM domain-containing protein [Halorhodospira halophila
           SL1]
 gi|121589311|gb|ABM61891.1| Radical SAM domain protein [Halorhodospira halophila SL1]
          Length = 209

 Score =  213 bits (543), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 110/208 (52%), Positives = 138/208 (66%), Gaps = 3/208 (1%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++  +F TLQGEG  +GR AVF RF+GCNLWSGRE DR +A C FCDTDFVG  G  GG
Sbjct: 3   YAVHSLFYTLQGEGARSGRPAVFLRFAGCNLWSGREADRATAVCTFCDTDFVGTGGPGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+ +  +LA  +   W  G +   Y V TGGEP LQ+D  L+ AL+ RGFE+AVETNGT+
Sbjct: 63  RFADAPELAAAVAAWWPGGGEP--YVVCTGGEPALQLDAALVAALHARGFEVAVETNGTL 120

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P G+DWICVSPKAG +L I  G ELKL++PQ    P+ +    F RF LQP+D     
Sbjct: 121 PLPAGVDWICVSPKAGTELAITAGDELKLIYPQPGAEPQRFTHLAFRRFYLQPLDDNQRG 180

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +T   + YC  +P+W LSVQ HK +GI
Sbjct: 181 AHTRAVLDYCRGHPQWWLSVQIHKDLGI 208


>gi|46581062|ref|YP_011870.1| hypothetical protein DVU2658 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450483|gb|AAS97130.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234739|gb|ADP87593.1| Radical SAM domain protein [Desulfovibrio vulgaris RCH1]
          Length = 216

 Score =  211 bits (536), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 108/213 (50%), Positives = 134/213 (62%), Gaps = 6/213 (2%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +KEIF TLQGEG  AGR AVFCRFSGCNLW+G  QDR +A C FCDTDFVG  G  GG
Sbjct: 3   YRVKEIFHTLQGEGMRAGRAAVFCRFSGCNLWTGWAQDRPAAVCPFCDTDFVGTDGPGGG 62

Query: 64  RYNVDQLADLIEEQ---WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
            +               + TGE    Y V TGGEP LQ+D PLI  L+  G E+A+ETNG
Sbjct: 63  VFEDAATLAAAILAAFPYKTGEGYRPYVVFTGGEPALQLDRPLIDILHAHGCEVAIETNG 122

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG-- 178
           T+  P+GIDW+ VSPKAG  L +  G ELKLV+PQ  + PE+Y    F    +QP DG  
Sbjct: 123 TVRLPEGIDWVTVSPKAGTRLAVTSGDELKLVWPQQGICPESYESLAFTYLLMQPRDGLG 182

Query: 179 -PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                +  + A+ +C  +P+WRL +QTHK++GI
Sbjct: 183 DAGRGDAESEAVRWCLAHPRWRLCLQTHKYLGI 215


>gi|144898951|emb|CAM75815.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 210

 Score =  210 bits (535), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 110/212 (51%), Positives = 133/212 (62%), Gaps = 10/212 (4%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +KE+F TLQGEGG AGR A+F RF+GCNLWSGRE DR +AQC FCDTDFVG     G 
Sbjct: 3   YKVKELFYTLQGEGGQAGRAAIFLRFAGCNLWSGREADRATAQCPFCDTDFVG-----GD 57

Query: 64  RYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +Y             W  G       V+TGGEP LQ+D  LIQAL+  G EIAVETNGTI
Sbjct: 58  KYADADALAGAVAALWPKGGGGQPLVVITGGEPGLQLDEALIQALHFWGLEIAVETNGTI 117

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP--- 179
             P GIDW+CVSPKAG DL+   G E+KLV+PQ  + P  +    F  + LQP D P   
Sbjct: 118 ALPPGIDWVCVSPKAGQDLETIAGDEIKLVWPQDGIDPTRFEKMPFRHYFLQPKDVPGDS 177

Query: 180 -FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                +    ++YC  +P+WRLS+QTHK +GI
Sbjct: 178 AAQAAHLQACVAYCLTHPRWRLSLQTHKILGI 209


>gi|121608068|ref|YP_995875.1| hypothetical protein Veis_1081 [Verminephrobacter eiseniae EF01-2]
 gi|121552708|gb|ABM56857.1| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2]
          Length = 222

 Score =  209 bits (532), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 122/211 (57%), Positives = 143/211 (67%), Gaps = 4/211 (1%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIF TLQGEGG  G  AVFCRF+GCNLWSGRE DR  A CRFCDTDFVG  GT GG
Sbjct: 13  YSVKEIFYTLQGEGGQTGMPAVFCRFAGCNLWSGREADRADALCRFCDTDFVGTDGTLGG 72

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++   D LA+ I  QW   +   R  VLTGGEPLLQVD  L+ AL+ + F IAVETNG++
Sbjct: 73  KFAQADALAERIAAQWPAADSAHRLVVLTGGEPLLQVDAALLAALHAQQFRIAVETNGSL 132

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFSLQPMDGPF 180
             P GIDW+CVSPKAG       GQELKLV+PQ  ++++     G    RF LQPMDGP 
Sbjct: 133 AAPPGIDWLCVSPKAGAPWVQTQGQELKLVWPQAGMDLAAIARTGQFTHRF-LQPMDGPD 191

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
              +  + I+ C Q P WRLS+QTHK  GIR
Sbjct: 192 QAAHIAICIAACLQQPLWRLSLQTHKISGIR 222


>gi|218886225|ref|YP_002435546.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757179|gb|ACL08078.1| radical SAM domain protein [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 224

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 110/228 (48%), Positives = 135/228 (59%), Gaps = 26/228 (11%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +KEIF +LQGEG HAGR AVFCRFSGCNLW+GREQDR  A CRFCDTDF G  G  GG
Sbjct: 3   YRVKEIFHSLQGEGVHAGRAAVFCRFSGCNLWTGREQDRPDAACRFCDTDFTGTDGPGGG 62

Query: 64  RYNVDQ-------------LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110
            +   Q             LA L    W        Y V TGGEP LQ+   L+ AL+  
Sbjct: 63  VFEDAQALAAAILAAFPYPLAPLDGGGWRP------YVVFTGGEPALQLTPELLDALHAH 116

Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
           G +  VETNGT+  P G+DW+ VSPKAG  L +  G ELKLV+PQ  V P ++ G DF  
Sbjct: 117 GCQCGVETNGTLPLPAGLDWVTVSPKAGTRLAVTRGDELKLVWPQDGVDPADFAGLDFGH 176

Query: 171 FSLQPMD-------GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           F LQP D            ++    + +C ++P+WRL +QTHK++GIR
Sbjct: 177 FILQPRDDAARGAGAQAGADHIAACVRHCLEHPRWRLGLQTHKYLGIR 224


>gi|94500711|ref|ZP_01307241.1| Organic radical activating enzyme [Oceanobacter sp. RED65]
 gi|94427266|gb|EAT12246.1| Organic radical activating enzyme [Oceanobacter sp. RED65]
          Length = 223

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 100/217 (46%), Positives = 134/217 (61%), Gaps = 10/217 (4%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           +++KE F TLQGEG  AGR +VF RFS CNLW+G+E  R +A C+FCDTD VG  G  GG
Sbjct: 6   FNVKEAFYTLQGEGARAGRASVFIRFSKCNLWNGKESGRGAAVCQFCDTDIVGTDGQNGG 65

Query: 64  RYNVDQLADLIEEQW--ITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
            YN   L +L    W  +T + + + Y V TGGEP LQ+   L+    + GFE AVE+NG
Sbjct: 66  TYNQQALVELALSLWPQLTDDTKSKPYVVFTGGEPALQLTESLVSDFQQAGFECAVESNG 125

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM---- 176
           T+  P  +DW+C+SPK   ++ +K   ELKLV+PQV++SP+   G     F L PM    
Sbjct: 126 TLPLPTNLDWVCISPKGTSEIVVKQCDELKLVYPQVDLSPDAVSGISASYFYLSPMADYG 185

Query: 177 ---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               G  + EN   A  YC  +P+WR+S+QTHK +GI
Sbjct: 186 EQNSGMIIRENMQAATQYCLDHPQWRMSLQTHKLLGI 222


>gi|94987241|ref|YP_595174.1| hypothetical protein LI0799 [Lawsonia intracellularis PHE/MN1-00]
 gi|94731490|emb|CAJ54853.1| conserved hypothetical protein [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 212

 Score =  204 bits (520), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 105/212 (49%), Positives = 135/212 (63%), Gaps = 6/212 (2%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV----GIQG 59
           + IKE+F T+QGEG   GR AVFCRFSGCNLWSG+E+DR  A+C+FCDTDF+    GI  
Sbjct: 3   FYIKELFYTIQGEGVQTGRPAVFCRFSGCNLWSGKEKDRAIAKCQFCDTDFLNADFGILD 62

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           ++     V  +     +   T      Y V TGGEP LQ++  +I  L+K   EIA+ETN
Sbjct: 63  SEEQL--VANILQTFPQNNYTHPSYKPYVVFTGGEPSLQLNQVIINLLHKYHIEIAIETN 120

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GTI  P+ IDWI VSPK G +L    G ELKLV+PQ N  PE Y+  +F+ F LQP D  
Sbjct: 121 GTIPLPKHIDWITVSPKEGNELVTTVGNELKLVWPQQNCDPEKYLTLEFDNFILQPKDDK 180

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            L  N  + I YC ++P W+L +Q+HK+IGIR
Sbjct: 181 NLSNNIQICIEYCMKHPYWKLGLQSHKWIGIR 212


>gi|254246872|ref|ZP_04940193.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
 gi|124871648|gb|EAY63364.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
          Length = 207

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 88/148 (59%), Positives = 106/148 (71%), Gaps = 2/148 (1%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGENGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ +   L   I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG++
Sbjct: 63  KFKDAAALVATIAGLWPEGEAN-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGSL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELK 150
              + IDWICVSPKA   L +  G ELK
Sbjct: 122 PVLESIDWICVSPKADAPLVVTKGNELK 149


>gi|268315892|ref|YP_003289611.1| queuosine biosynthesis protein QueE [Rhodothermus marinus DSM 4252]
 gi|262333426|gb|ACY47223.1| queuosine biosynthesis protein QueE [Rhodothermus marinus DSM 4252]
          Length = 233

 Score =  160 bits (406), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 105/241 (43%), Positives = 135/241 (56%), Gaps = 40/241 (16%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLS------AQC-RFCDTD 53
           M+ Y +KEI+ TLQGEG  AGR AVF RF GCNLWSGR++DR        A C R+CDTD
Sbjct: 1   MRSYRVKEIWKTLQGEGFFAGRPAVFVRFVGCNLWSGRDEDRARDARRTGADCPRWCDTD 60

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
           F   +G++   Y  D+L   ++E  + G  +  +CVLTGGEPLLQ+D  L++AL   G+ 
Sbjct: 61  FRK-EGSRA--YTADELVAAMQE--VGGPIQ--FCVLTGGEPLLQLDAALMRALKAAGYF 113

Query: 114 IAVETNGTI-------EPPQG----IDWICVSPKAGCD-LKIKGGQELKLVFPQVNVSPE 161
           +A+ETNGTI       +P  G     DWI  SPK   D L ++   ELKLV P  +  PE
Sbjct: 114 VAIETNGTISLREACTDPETGQVVAPDWIVCSPKLPEDRLALEYFDELKLVVP--DYRPE 171

Query: 162 NYIGF------------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
            Y  F                  LQP DGP L E    A+     +P WR+SVQTHK +G
Sbjct: 172 QYARFARRARPHRVGGRRIPLLWLQPEDGPRLAEAQRCAVELALAHPDWRVSVQTHKILG 231

Query: 210 I 210
           +
Sbjct: 232 V 232


>gi|299141903|ref|ZP_07035038.1| organic radical activating enzyme [Prevotella oris C735]
 gi|298576754|gb|EFI48625.1| organic radical activating enzyme [Prevotella oris C735]
          Length = 190

 Score =  144 bits (363), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 88/213 (41%), Positives = 115/213 (53%), Gaps = 28/213 (13%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           K Y + EIF +LQGEG + GR AVF RFSGCNL           +C FCDTDF       
Sbjct: 3   KTYKVNEIFYSLQGEGRNTGRAAVFIRFSGCNL-----------KCSFCDTDFKLYH--- 48

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
                 + + D + E W    K   + VLTGGEP LQVD  LI AL+  GF +A+E+NGT
Sbjct: 49  --EMTAEAIVDAVRE-W----KTAGFVVLTGGEPTLQVDSQLIDALHAEGFYVAMESNGT 101

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
             PP  +DW+ +SPK    + +    ELK +F      P + +G + + + LQP D    
Sbjct: 102 NVPPANLDWLTISPKE--HVVVTECNELKCIFD--GQKPVDDLGIEADYYYLQPCDVGND 157

Query: 182 EEN---TNLAISYCFQNPKWRLSVQTHKFIGIR 211
            +N   T   I Y   +PKWRLS+QTHK IG +
Sbjct: 158 VQNRAITQACIRYIASHPKWRLSLQTHKMIGFQ 190


>gi|281426145|ref|ZP_06257058.1| radical SAM domain protein [Prevotella oris F0302]
 gi|281399721|gb|EFB30552.1| radical SAM domain protein [Prevotella oris F0302]
          Length = 190

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 89/213 (41%), Positives = 115/213 (53%), Gaps = 28/213 (13%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           K Y + EIF +LQGEG + GR AVF RFSGCNL           +C FCDTDF  +    
Sbjct: 3   KTYKVNEIFYSLQGEGRNTGRAAVFIRFSGCNL-----------KCSFCDTDF-KLYHEM 50

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
                VD + D     W    K   + VLTGGEP LQVD  LI AL+  GF +A+E+NGT
Sbjct: 51  TAEAIVDAVRD-----W----KTAGFVVLTGGEPTLQVDGKLIDALHAEGFYVAMESNGT 101

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
             PP  +DW+ +SPK    + +    ELK +F      P + +G + + + LQP D    
Sbjct: 102 NVPPPNLDWLTISPKE--HVVVTECNELKCIFD--GQKPVDDLGIEADYYYLQPCDVGND 157

Query: 182 EEN---TNLAISYCFQNPKWRLSVQTHKFIGIR 211
            +N   T   I Y   +PKWRLS+QTHK IG +
Sbjct: 158 VQNRTITQACIRYIASHPKWRLSLQTHKMIGFQ 190


>gi|315607677|ref|ZP_07882671.1| GntS protein [Prevotella buccae ATCC 33574]
 gi|315250613|gb|EFU30608.1| GntS protein [Prevotella buccae ATCC 33574]
          Length = 210

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/221 (42%), Positives = 119/221 (53%), Gaps = 25/221 (11%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-QG 59
           MK Y I EIF +LQGEG + GR AVF RFSGCNL            C FCDTDF    + 
Sbjct: 5   MKRYRINEIFYSLQGEGRNTGRAAVFVRFSGCNL-----------ACSFCDTDFRAYREM 53

Query: 60  TKGGRYNVDQ--LADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGF-E 113
           T     N  +  L   ++ +   G    R     VLTGGEP LQVD  LI AL+  GF E
Sbjct: 54  TSDEVVNTVKGILPSFVDNRSGEGVGTARSSVLVVLTGGEPTLQVDFDLIDALHHAGFPE 113

Query: 114 IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
           +A+E+NGT EPP  +DW+ VSPK    + +    ELK +F +   + +  I  DF  + L
Sbjct: 114 VAMESNGTKEPPPNLDWLTVSPKE--QVSVNRCNELKCLFDESGRADDCGIRADF--YYL 169

Query: 174 QPMDGPFLEENTNLAIS---YCFQNPKWRLSVQTHKFIGIR 211
           QP D      N  +  +   Y  Q+PKW+LS+QTHK IG +
Sbjct: 170 QPCDTGDPVRNAEIIAACTEYIKQHPKWQLSLQTHKLIGFK 210


>gi|288924671|ref|ZP_06418608.1| radical SAM [Prevotella buccae D17]
 gi|288338458|gb|EFC76807.1| radical SAM [Prevotella buccae D17]
          Length = 206

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/221 (42%), Positives = 119/221 (53%), Gaps = 25/221 (11%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-QG 59
           MK Y I EIF +LQGEG + GR AVF RFSGCNL            C FCDTDF    + 
Sbjct: 1   MKRYRINEIFYSLQGEGRNTGRAAVFVRFSGCNL-----------ACSFCDTDFRAYREM 49

Query: 60  TKGGRYNVDQ--LADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGF-E 113
           T     N  +  L   ++ +   G    R     VLTGGEP LQVD  LI AL+  GF E
Sbjct: 50  TSDEVVNTVKGILPSFVDNRSGEGVGTARSSVLVVLTGGEPTLQVDFDLIDALHHAGFPE 109

Query: 114 IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
           +A+E+NGT EPP  +DW+ VSPK    + +    ELK +F +   + +  I  DF  + L
Sbjct: 110 VAMESNGTKEPPPNLDWLTVSPKE--QVSVNRCNELKCLFDESGRADDCGIRADF--YYL 165

Query: 174 QPMDGPFLEENTNLAIS---YCFQNPKWRLSVQTHKFIGIR 211
           QP D      N  +  +   Y  Q+PKW+LS+QTHK IG +
Sbjct: 166 QPCDTGDPVRNAEIIAACTEYIKQHPKWQLSLQTHKLIGFK 206


>gi|300727783|ref|ZP_07061165.1| organic radical activating enzyme [Prevotella bryantii B14]
 gi|299774936|gb|EFI71546.1| organic radical activating enzyme [Prevotella bryantii B14]
          Length = 196

 Score =  137 bits (346), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 84/217 (38%), Positives = 118/217 (54%), Gaps = 29/217 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ--GT 60
           +  I EIF +LQGEG H GR A+F RFSGCNL           +C FCDTDF   Q    
Sbjct: 1   MKKINEIFYSLQGEGRHTGRAAIFIRFSGCNL-----------KCSFCDTDFKDYQEMSD 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           +   Y V++L    +++     +     +LTGGEP +QVD   I   +  G+ +A+E+NG
Sbjct: 50  EDILYKVEELR---KDKIKDAGQPKPMIILTGGEPTMQVDGAFIDMFHAAGYFVAMESNG 106

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP---QVNVSPENYIGFDFERFSLQPMD 177
           T EPP+ +DW+ VSPK    +K+    ELK +F    QV+       G     + LQP D
Sbjct: 107 TKEPPKQLDWLTVSPKE--HVKVAQCDELKCIFDGEHQVDT-----FGIKAYYYYLQPCD 159

Query: 178 GPFLEENTNL---AISYCFQNPKWRLSVQTHKFIGIR 211
               ++N  +    ++Y  Q+PKWRLS+QTHK IG +
Sbjct: 160 TGDAQKNQEILSACVAYIEQHPKWRLSLQTHKLIGFK 196


>gi|282879508|ref|ZP_06288242.1| radical SAM domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281306655|gb|EFA98681.1| radical SAM domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 199

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 118/221 (53%), Gaps = 36/221 (16%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           ++ Y + EIF +LQGEG HAG+ AVF RF+ CNL            C FCDT+F      
Sbjct: 5   VRTYKVNEIFYSLQGEGHHAGKAAVFVRFAKCNL-----------HCSFCDTNF------ 47

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYC---VLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
                  D+  ++  +Q I   ++   C   V+TGGEP LQV   L+Q  +  G+ +++E
Sbjct: 48  -------DEYTEMSAQQIIENVQQYAPCNFVVITGGEPTLQVTATLLQLFHVHGYYVSME 100

Query: 118 TNGTIEPPQGIDWICVSPKAGC----DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
           TNGT   P+G+DWI  SPK       D++IK   E+K+V+    + P +  G + E   +
Sbjct: 101 TNGTHPIPKGVDWITCSPKKAFIEAGDVQIKQANEIKVVYD--GIHPISTFGIEAEERYV 158

Query: 174 QPMDGPFLEENTNL---AISYCFQNPKWRLSVQTHKFIGIR 211
           QP D      N  +   AI +   +P+W+LS+Q HK IGI+
Sbjct: 159 QPCDVGDESRNKEILQKAIQFVKTHPQWKLSLQLHKLIGIQ 199


>gi|189460362|ref|ZP_03009147.1| hypothetical protein BACCOP_00999 [Bacteroides coprocola DSM 17136]
 gi|189432914|gb|EDV01899.1| hypothetical protein BACCOP_00999 [Bacteroides coprocola DSM 17136]
          Length = 181

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/211 (40%), Positives = 112/211 (53%), Gaps = 34/211 (16%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT     +    
Sbjct: 1   MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------KCSFCDTQHEEFR---- 45

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYC---VLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
                     ++ +  I  E     C   +LTGGEP L +D  L +AL+  G  IA+ETN
Sbjct: 46  ----------MMTDDEIIAEVCTYPCQMVILTGGEPGLSIDSQLTKALHAAGKYIAIETN 95

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GT   P+ IDW+  SPK G  LK+    E+K+V+   +VSP  Y+    +   LQP  G 
Sbjct: 96  GTCVLPEDIDWVTCSPKEGTTLKLHHIDEVKVVYVGQDVSP--YLKLPAKHHFLQPCSG- 152

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              +NTN  I+Y  ++P+WRLS+QTHK I I
Sbjct: 153 ---QNTNDVIAYIKEHPQWRLSLQTHKLIDI 180


>gi|325299596|ref|YP_004259513.1| Radical SAM domain-containing protein [Bacteroides salanitronis DSM
           18170]
 gi|324319149|gb|ADY37040.1| Radical SAM domain protein [Bacteroides salanitronis DSM 18170]
          Length = 181

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/208 (40%), Positives = 116/208 (55%), Gaps = 28/208 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG HAG  AVF RFSGCNL           +C FCDT      GT+ 
Sbjct: 1   MRKINEIFYSLQGEGAHAGTPAVFVRFSGCNL-----------KCIFCDTSHES--GTEM 47

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           G        ++IEE     +   R  ++TGGEP L +D  L+  L+K G  +AVETNGT 
Sbjct: 48  GD------EEIIEE---VCKYPCRMVIMTGGEPGLWIDDALVDLLHKAGKYVAVETNGTQ 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+ +DW+  SPK G  L+++   E+K+V+   +VSP  Y+  + +   LQP       
Sbjct: 99  VLPEAVDWVTCSPKEGTVLRVRHIDEVKVVYIGQDVSP--YLLIEAKEHFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +NT   I Y  ++P+WRLS+QTHK I I
Sbjct: 153 QNTEEVIEYIKKHPQWRLSLQTHKLINI 180


>gi|282878839|ref|ZP_06287606.1| radical SAM domain protein [Prevotella buccalis ATCC 35310]
 gi|281299047|gb|EFA91449.1| radical SAM domain protein [Prevotella buccalis ATCC 35310]
          Length = 199

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/220 (37%), Positives = 117/220 (53%), Gaps = 36/220 (16%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           + Y + EIF +LQGEG HAGR AVF RF+ CNL            C FCDT+F       
Sbjct: 6   RTYKVNEIFYSLQGEGHHAGRAAVFVRFAKCNL-----------HCWFCDTNF------- 47

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYC---VLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
                 D   ++  +Q I   ++   C   V+TGGEP LQV   L+Q  +  G+ +++ET
Sbjct: 48  ------DTFTEMSAQQIIENVQQYAPCHFVVITGGEPTLQVTPELLQLFHIHGYYVSMET 101

Query: 119 NGTIEPPQGIDWICVSPKAGC----DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
           NGT   P+G+DW+  SPK       D+ IK   E+K+V+    + P +  G + E   +Q
Sbjct: 102 NGTHPIPKGVDWVTCSPKKAFIEAGDVHIKQANEIKVVYD--GIHPISTFGIESEERYVQ 159

Query: 175 PMD-GPFL--EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           P D G  L  +E    AI +   +P+W+LS+Q HK IGI+
Sbjct: 160 PCDVGDELRNKEIMQQAIQFVKTHPQWKLSLQLHKLIGIQ 199


>gi|160887244|ref|ZP_02068247.1| hypothetical protein BACOVA_05261 [Bacteroides ovatus ATCC 8483]
 gi|315919753|ref|ZP_07915993.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156107655|gb|EDO09400.1| hypothetical protein BACOVA_05261 [Bacteroides ovatus ATCC 8483]
 gi|313693628|gb|EFS30463.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 183

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/217 (40%), Positives = 110/217 (50%), Gaps = 40/217 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M +  I EIF +LQGEG H G  A+F RFSGCNL           +C FCDT     Q  
Sbjct: 1   MTMRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDT-----QHE 44

Query: 61  KGGRYNVDQLADLIEEQWITGEKE--GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
           +G          + +E+ IT  K+      VLTGGEP L +D  LI  L++ G  + +ET
Sbjct: 45  EGTM--------MTDEEIITKVKKYPAVTVVLTGGEPSLWIDDQLIDLLHQAGKYVTIET 96

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
           NGT   P  IDW+  SPK G  L I    E+K+V          Y G D   F L P + 
Sbjct: 97  NGTHPLPASIDWVTCSPKQGAKLAIDRMNEVKVV----------YEGQDISIFELLPAEH 146

Query: 179 PFLE----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            FL+     NT L +    ++PKWRLS+QTHK I IR
Sbjct: 147 FFLQPCSCNNTALTVDCVMRHPKWRLSLQTHKLIDIR 183


>gi|260171438|ref|ZP_05757850.1| hypothetical protein BacD2_06190 [Bacteroides sp. D2]
          Length = 181

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/215 (40%), Positives = 109/215 (50%), Gaps = 40/215 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  A+F RFSGCNL           +C FCDT     Q  +G
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDT-----QHEEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKE--GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
                     + +E+ IT  K+      VLTGGEP L +D  LI  L++ G  + +ETNG
Sbjct: 45  TM--------MTDEEIITKVKKYPAVTVVLTGGEPSLWIDDQLIDLLHQAGKYVTIETNG 96

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T   P  IDW+  SPK G  L I    E+K+V          Y G D   F L P +  F
Sbjct: 97  THPLPASIDWVTCSPKQGAKLAIDRMNEVKVV----------YEGQDISIFELLPAEHFF 146

Query: 181 LE----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           L+     NT L +    ++PKWRLS+QTHK I IR
Sbjct: 147 LQPCSCNNTALTVDCVMRHPKWRLSLQTHKLIDIR 181


>gi|258647408|ref|ZP_05734877.1| NrdG protein [Prevotella tannerae ATCC 51259]
 gi|260852776|gb|EEX72645.1| NrdG protein [Prevotella tannerae ATCC 51259]
          Length = 189

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/214 (39%), Positives = 113/214 (52%), Gaps = 28/214 (13%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  + I EIF +LQGEG ++G  ++F RFSGCNL            C FCDT     Q  
Sbjct: 1   MTRFKINEIFYSLQGEGFYSGIASIFIRFSGCNL-----------SCSFCDT-----QHE 44

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
            G     +Q+ D +           ++ VLTGGEP L V   LI  L+  G  + +ETNG
Sbjct: 45  TGELMTQEQILDQVTR------FPAKHVVLTGGEPSLFVTKELIDGLHAAGKYVCIETNG 98

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD-GP 179
               P+GIDW+ +SPK    + +K   ELK+VF     +P + I      + +QP D G 
Sbjct: 99  LHALPEGIDWVTLSPKTAQTI-LKTCNELKVVFTDDTFNPHDEI--KAAHYFIQPCDMGN 155

Query: 180 FLEENTNLA--ISYCFQNPKWRLSVQTHKFIGIR 211
            ++ N  LA  ISY  +NP+WRLS+QTHK IGI 
Sbjct: 156 SIKNNRILASCISYVKENPRWRLSLQTHKMIGIH 189


>gi|224026000|ref|ZP_03644366.1| hypothetical protein BACCOPRO_02751 [Bacteroides coprophilus DSM
           18228]
 gi|224019236|gb|EEF77234.1| hypothetical protein BACCOPRO_02751 [Bacteroides coprophilus DSM
           18228]
          Length = 181

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/208 (38%), Positives = 109/208 (52%), Gaps = 28/208 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG HAG  AVF RFSGCNL           +C FCDT     +  +G
Sbjct: 1   MKKINEIFYSLQGEGYHAGTPAVFVRFSGCNL-----------KCDFCDT-----RHEEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                  +   +E+         R  +LTGGEP L +D  L+ AL+  G  + +ETNGT 
Sbjct: 45  TEMENGDIVKAVEQY------PCRMVILTGGEPGLWIDSALVDALHASGRYVCIETNGTC 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+ IDW+  SPK G  LK+    E+K+V+   +VS    +      + LQP       
Sbjct: 99  LLPENIDWVTCSPKQGTSLKVAHVDEVKVVYLGQDVSA--CLDIPARHYFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +NT+  I+Y  Q+P WRLS+QTHK I I
Sbjct: 153 QNTDEVIAYIKQHPVWRLSLQTHKLINI 180


>gi|298384120|ref|ZP_06993681.1| GntS [Bacteroides sp. 1_1_14]
 gi|298263724|gb|EFI06587.1| GntS [Bacteroides sp. 1_1_14]
          Length = 182

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/210 (40%), Positives = 110/210 (52%), Gaps = 30/210 (14%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT     Q   G
Sbjct: 2   MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCSFCDT-----QHEAG 45

Query: 63  GRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
                D++ A++ +   +T        +LTGGEP L +D  LI  L+K G  + +ETNGT
Sbjct: 46  TLMTDDEIIAEVSKYPAVT-------VILTGGEPSLWIDDALIDRLHKAGKYVCIETNGT 98

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
              P+ IDW+  SPK G  L I    E+K+V+   ++S   Y     E F LQP      
Sbjct: 99  RPLPESIDWVTCSPKQGVKLGITRMDEVKVVYEGQDIS--IYELLPAEHFFLQPCSC--- 153

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             NT L +    ++PKWRLS+QTHK I IR
Sbjct: 154 -NNTALTVDCVMRHPKWRLSLQTHKLIDIR 182


>gi|299148832|ref|ZP_07041894.1| GntS [Bacteroides sp. 3_1_23]
 gi|298513593|gb|EFI37480.1| GntS [Bacteroides sp. 3_1_23]
          Length = 183

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/216 (39%), Positives = 110/216 (50%), Gaps = 38/216 (17%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M +  I EIF +LQGEG H G  A+F RFSGCNL           +C FCDT     Q  
Sbjct: 1   MMMRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDT-----QHE 44

Query: 61  KGGRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           +G     D++ A++ +   +T        VLTGGEP L VD  LI  L++ G  + +ETN
Sbjct: 45  EGKMMTDDEIIAEVKKYPAVT-------VVLTGGEPSLWVDDELIDRLHQAGKYVTIETN 97

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GT   P  IDW+  SPK G  L I    E+K+V          Y G D   F L P +  
Sbjct: 98  GTRPLPVAIDWVTCSPKQGVKLAIDRMDEVKVV----------YEGQDISIFELLPAEHF 147

Query: 180 FLE----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           FL+     NT   +    ++PKWRLS+QTHK I IR
Sbjct: 148 FLQPCSCNNTASTVDCVMRHPKWRLSLQTHKLIDIR 183


>gi|198276623|ref|ZP_03209154.1| hypothetical protein BACPLE_02819 [Bacteroides plebeius DSM 17135]
 gi|198270148|gb|EDY94418.1| hypothetical protein BACPLE_02819 [Bacteroides plebeius DSM 17135]
          Length = 181

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 110/208 (52%), Gaps = 28/208 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        +G
Sbjct: 1   MKKINEIFYSLQGEGFHVGTPAVFVRFSGCNL-----------KCEFCDT-----HHEEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + +++ + +       +   +  +LTGGEP L VD  LI AL+K G  I +ETNGT 
Sbjct: 45  VMMSDEEIVEKV------CQYPCKTVILTGGEPGLWVDEDLIAALHKAGKYICIETNGTC 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+ IDW+  SPK G  L++    E+K+VF   +VSP  Y+      + LQP       
Sbjct: 99  VLPESIDWVTCSPKLGAPLRVNRIDEVKVVFLGQDVSP--YLELKASFYFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT   + Y   +P+WRLS+QTHK I I
Sbjct: 153 RNTAEVVEYIKSHPQWRLSLQTHKLIDI 180


>gi|294775146|ref|ZP_06740672.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
 gi|294450958|gb|EFG19432.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
          Length = 193

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 79/210 (37%), Positives = 110/210 (52%), Gaps = 28/210 (13%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           + +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        
Sbjct: 11  LSMRRINEIFYSLQGEGYHTGIPAVFVRFSGCNL-----------RCPFCDTQH------ 53

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           + G    D+  D++ E     +   +  +LTGGEP L +D  L+ AL+  G  + +ETNG
Sbjct: 54  EEGTLMSDE--DIVME---VAKYSTQVVILTGGEPGLWIDEKLVDALHHEGKYVCIETNG 108

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T   P+ IDW+  SPK G  + +    E+K+V+   +VS   Y+      + LQP     
Sbjct: 109 TCLLPENIDWVTCSPKEGAKINLDRIDEVKVVYVGQDVSA--YLDLSASHYFLQPCSCA- 165

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              NT   I+Y  Q+P+WRLS+QTHK + I
Sbjct: 166 ---NTEEVIAYILQHPEWRLSLQTHKLLQI 192


>gi|153809323|ref|ZP_01961991.1| hypothetical protein BACCAC_03636 [Bacteroides caccae ATCC 43185]
 gi|149128093|gb|EDM19314.1| hypothetical protein BACCAC_03636 [Bacteroides caccae ATCC 43185]
          Length = 181

 Score =  127 bits (320), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 82/213 (38%), Positives = 109/213 (51%), Gaps = 36/213 (16%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG + G  A+F RFSGCNL           +C FCDT     Q  +G
Sbjct: 1   MRKINEIFYSLQGEGYYTGTPAIFIRFSGCNL-----------KCSFCDT-----QHEEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                D++   +++            VLTGGEP L +D  LI  L++ G  + VETNGT 
Sbjct: 45  TMMTDDEIIAEVKKY------PAVTVVLTGGEPSLWIDATLIDRLHEAGKYVTVETNGTN 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+ +DW+  SPK G +LKI    E+K+V          Y G D   F L P +  FL+
Sbjct: 99  PLPESVDWVTCSPKQGVELKINRIDEVKVV----------YEGQDISIFELLPAEHFFLQ 148

Query: 183 E----NTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                NT   +    ++PKWRLS+QTHK I IR
Sbjct: 149 PCSCINTADTVDCVMRHPKWRLSLQTHKLIDIR 181


>gi|288799933|ref|ZP_06405392.1| GntS [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333181|gb|EFC71660.1| GntS [Prevotella sp. oral taxon 299 str. F0039]
          Length = 192

 Score =  127 bits (320), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/217 (37%), Positives = 110/217 (50%), Gaps = 40/217 (18%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF TLQGEG H GR AVF RF+GCNL            C FCDT             
Sbjct: 3   VNEIFYTLQGEGAHTGRAAVFLRFAGCNL-----------TCSFCDTQH----------- 40

Query: 66  NVDQLADLIEEQWITGEKE--GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
             +    + EE+ +    +    + V+TGGEP +Q+   LI  L+  G ++ +ETNGTI 
Sbjct: 41  --ETYTSMSEEEIVISINKFPSTWVVITGGEPTIQLTESLIHKLHAIGKKVQIETNGTII 98

Query: 124 PPQGIDWICVSPK----AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           PP   DWI VSPK       ++K +   ELK+V+   N +   Y     + + LQP D  
Sbjct: 99  PPPNTDWITVSPKFEYCKRAEIKAERINELKVVYDGSN-NMSVYETIKADHYFLQPCD-- 155

Query: 180 FLEENT------NLAISYCFQNPKWRLSVQTHKFIGI 210
            L++ T      N  I Y  +NPKWRLS+QTHK + +
Sbjct: 156 -LQDETKNKKIINQVIEYIKKNPKWRLSLQTHKILNM 191


>gi|29349862|ref|NP_813365.1| hypothetical protein BT_4454 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29341773|gb|AAO79559.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 182

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/210 (40%), Positives = 110/210 (52%), Gaps = 30/210 (14%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT     Q   G
Sbjct: 2   MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCSFCDT-----QHEAG 45

Query: 63  GRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
                D++ A++ +   +T        +LTGGEP L +D  LI  L++ G  + +ETNGT
Sbjct: 46  TLMTDDEIIAEVSKYPAVT-------VILTGGEPSLWIDDALIDRLHEAGKYVCIETNGT 98

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
              P+ IDW+  SPK G  L I    E+K+V+   ++S   Y     E F LQP      
Sbjct: 99  RPLPESIDWVTCSPKQGVKLGITRMDEVKVVYEGQDIS--IYELLPAEHFFLQPCSC--- 153

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             NT L +    ++PKWRLS+QTHK I IR
Sbjct: 154 -NNTALTVDCVMRHPKWRLSLQTHKLIDIR 182


>gi|253569769|ref|ZP_04847178.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840150|gb|EES68232.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 181

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/210 (40%), Positives = 110/210 (52%), Gaps = 30/210 (14%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT     Q   G
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCSFCDT-----QHEAG 44

Query: 63  GRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
                D++ A++ +   +T        +LTGGEP L +D  LI  L++ G  + +ETNGT
Sbjct: 45  TLMTDDEIIAEVSKYPAVT-------VILTGGEPSLWIDDALIDRLHEAGKYVCIETNGT 97

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
              P+ IDW+  SPK G  L I    E+K+V+   ++S   Y     E F LQP      
Sbjct: 98  RPLPESIDWVTCSPKQGVKLGITRMDEVKVVYEGQDIS--IYELLPAEHFFLQPCSC--- 152

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             NT L +    ++PKWRLS+QTHK I IR
Sbjct: 153 -NNTALTVDCVMRHPKWRLSLQTHKLIDIR 181


>gi|262408739|ref|ZP_06085285.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|293369177|ref|ZP_06615771.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f]
 gi|294647054|ref|ZP_06724666.1| radical SAM domain protein [Bacteroides ovatus SD CC 2a]
 gi|294807238|ref|ZP_06766052.1| radical SAM domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|298481567|ref|ZP_06999759.1| GntS [Bacteroides sp. D22]
 gi|262353604|gb|EEZ02698.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292635760|gb|EFF54258.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f]
 gi|292637600|gb|EFF56006.1| radical SAM domain protein [Bacteroides ovatus SD CC 2a]
 gi|294445536|gb|EFG14189.1| radical SAM domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|295087026|emb|CBK68549.1| Organic radical activating enzymes [Bacteroides xylanisolvens XB1A]
 gi|298272431|gb|EFI14000.1| GntS [Bacteroides sp. D22]
          Length = 182

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/214 (39%), Positives = 109/214 (50%), Gaps = 38/214 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  A+F RFSGCNL           +C FCDT     Q  +G
Sbjct: 2   MRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDT-----QHEEG 45

Query: 63  GRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
                D++ A++ +   +T        VLTGGEP L +D  LI  L++ G  + +ETNGT
Sbjct: 46  KMMTDDEIIAEVKKYPAVT-------VVLTGGEPSLWIDDELIDRLHQAGKYVTIETNGT 98

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
              P  IDW+  SPK G  L I    E+K+V          Y G D   F L P +  FL
Sbjct: 99  RPLPAAIDWVTCSPKQGVKLAIDRMDEVKVV----------YEGQDISIFELLPAEHFFL 148

Query: 182 E----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +     NT   +    ++PKWRLS+QTHK I IR
Sbjct: 149 QPCSCNNTASTVDCVMRHPKWRLSLQTHKLIDIR 182


>gi|224538811|ref|ZP_03679350.1| hypothetical protein BACCELL_03706 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519568|gb|EEF88673.1| hypothetical protein BACCELL_03706 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 181

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/213 (38%), Positives = 109/213 (51%), Gaps = 36/213 (16%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT     +  +G
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCSFCDT-----RHEEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + D++   +      G+      +LTGGEP L +D   I  L++ G  + +ETNGT 
Sbjct: 45  VLMSDDEIIAEV------GKYPAVTVILTGGEPSLWIDEVFIDRLHQAGKYVCIETNGTN 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             PQ IDW+  SPK G  L I    E+K+V          Y G D E + L P +  FL+
Sbjct: 99  PLPQNIDWVTCSPKQGVKLGITRMDEVKVV----------YEGQDIEVYELLPAEYFFLQ 148

Query: 183 ----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                NT   ++   Q+PKWRLS+QTHK I IR
Sbjct: 149 PCSCSNTAETVACVMQHPKWRLSLQTHKLIDIR 181


>gi|150004624|ref|YP_001299368.1| hypothetical protein BVU_2083 [Bacteroides vulgatus ATCC 8482]
 gi|254883105|ref|ZP_05255815.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319643625|ref|ZP_07998245.1| hypothetical protein HMPREF9011_03847 [Bacteroides sp. 3_1_40A]
 gi|149933048|gb|ABR39746.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
 gi|254835898|gb|EET16207.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317384794|gb|EFV65753.1| hypothetical protein HMPREF9011_03847 [Bacteroides sp. 3_1_40A]
          Length = 181

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/205 (38%), Positives = 108/205 (52%), Gaps = 28/205 (13%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        + G  
Sbjct: 4   INEIFYSLQGEGYHTGIPAVFVRFSGCNL-----------RCPFCDTQH------EEGTL 46

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
             D+  D++ E     +   +  +LTGGEP L +D  L+ AL+  G  + +ETNGT   P
Sbjct: 47  MSDE--DIVME---VAKYSTQVVILTGGEPGLWIDEKLVDALHHEGKYVCIETNGTCLLP 101

Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185
           + IDW+  SPK G  + +    E+K+V+   +VS   Y+      + LQP        NT
Sbjct: 102 ENIDWVTCSPKEGAKINLDRIDEVKVVYVGQDVSA--YLDLSASHYFLQPCSCA----NT 155

Query: 186 NLAISYCFQNPKWRLSVQTHKFIGI 210
              I+Y  Q+P+WRLS+QTHK + I
Sbjct: 156 EEVIAYILQHPEWRLSLQTHKLLQI 180


>gi|237715731|ref|ZP_04546212.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229444440|gb|EEO50231.1| conserved hypothetical protein [Bacteroides sp. D1]
          Length = 181

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/214 (39%), Positives = 109/214 (50%), Gaps = 38/214 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  A+F RFSGCNL           +C FCDT     Q  +G
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDT-----QHEEG 44

Query: 63  GRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
                D++ A++ +   +T        VLTGGEP L +D  LI  L++ G  + +ETNGT
Sbjct: 45  KMMTDDEIIAEVKKYPAVT-------VVLTGGEPSLWIDDELIDRLHQAGKYVTIETNGT 97

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
              P  IDW+  SPK G  L I    E+K+V          Y G D   F L P +  FL
Sbjct: 98  RPLPAAIDWVTCSPKQGVKLAIDRMDEVKVV----------YEGQDISIFELLPAEHFFL 147

Query: 182 E----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +     NT   +    ++PKWRLS+QTHK I IR
Sbjct: 148 QPCSCNNTASTVDCVMRHPKWRLSLQTHKLIDIR 181


>gi|212693923|ref|ZP_03302051.1| hypothetical protein BACDOR_03445 [Bacteroides dorei DSM 17855]
 gi|237724017|ref|ZP_04554498.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|212663455|gb|EEB24029.1| hypothetical protein BACDOR_03445 [Bacteroides dorei DSM 17855]
 gi|229437681|gb|EEO47758.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 181

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/205 (38%), Positives = 108/205 (52%), Gaps = 28/205 (13%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT     Q  +G   
Sbjct: 4   INEIFYSLQGEGYHTGIPAVFVRFSGCNL-----------RCPFCDT-----QHEEGTLM 47

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
           + + +A  +       +   +  +LTGGEP L +D  L+ AL+  G  + +ETNGT   P
Sbjct: 48  SDEDIAMEV------AKYSTQVVILTGGEPGLWIDEKLVDALHHEGKYVCIETNGTCLLP 101

Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185
           + IDW+  SPK G  + +    E+K+V+   +VS   Y+      + LQP        NT
Sbjct: 102 ENIDWVTCSPKEGAKINLDRIDEVKVVYVGQDVSA--YLDLSASHYFLQPCSCA----NT 155

Query: 186 NLAISYCFQNPKWRLSVQTHKFIGI 210
              I+Y  Q+P+WRLS+QTHK + I
Sbjct: 156 EEVIAYILQHPEWRLSLQTHKLLQI 180


>gi|298376715|ref|ZP_06986670.1| hypothetical protein HMPREF0104_02900 [Bacteroides sp. 3_1_19]
 gi|301310018|ref|ZP_07215957.1| GntS [Bacteroides sp. 20_3]
 gi|298266593|gb|EFI08251.1| hypothetical protein HMPREF0104_02900 [Bacteroides sp. 3_1_19]
 gi|300831592|gb|EFK62223.1| GntS [Bacteroides sp. 20_3]
          Length = 181

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/213 (37%), Positives = 109/213 (51%), Gaps = 36/213 (16%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        + 
Sbjct: 1   MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------RCSFCDTRH------EE 43

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           G    D+  +++E+         R  +LTGGEP L +D  LI  L + G +I +ETNGT 
Sbjct: 44  GVMMTDE--EIVEK---VSSFPARMVILTGGEPSLWIDKALISRLREAGKQICIETNGTR 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDW+  SPK    + ++   E+K+V          Y G D   ++  P    FL+
Sbjct: 99  PLPDGIDWVTCSPKENAPVVLERVDEIKVV----------YTGQDLSAYAEIPARYHFLQ 148

Query: 183 ----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               +NT   + Y  ++P+WRLS+QTHK I I+
Sbjct: 149 PCSCQNTKEVVDYILRHPRWRLSLQTHKLIDIQ 181


>gi|237721523|ref|ZP_04552004.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449319|gb|EEO55110.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 181

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/214 (39%), Positives = 109/214 (50%), Gaps = 38/214 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  A+F RFSGCNL           +C FCDT     Q  +G
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDT-----QHEEG 44

Query: 63  GRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
                D++ A++ +   +T        VLTGGEP L +D  LI  L++ G  + +ETNGT
Sbjct: 45  KMMTDDEIIAEVKKYPAVT-------VVLTGGEPSLWIDDELIDRLHEAGKYVTIETNGT 97

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
              P  IDW+  SPK G  L I    E+K+V          Y G D   F L P +  FL
Sbjct: 98  RPLPAAIDWVTCSPKQGGKLAIDRMDEVKVV----------YEGQDISIFELLPAEHFFL 147

Query: 182 E----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +     NT   +    ++PKWRLS+QTHK I IR
Sbjct: 148 QPCSCNNTASTVDCVMRHPKWRLSLQTHKLIDIR 181


>gi|53714880|ref|YP_100872.1| hypothetical protein BF3595 [Bacteroides fragilis YCH46]
 gi|253565984|ref|ZP_04843438.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|52217745|dbj|BAD50338.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|251945088|gb|EES85526.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 181

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/208 (38%), Positives = 106/208 (50%), Gaps = 28/208 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        + 
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCDFCDTRH------EE 43

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           G    D+  D++ E    G+      +LTGGEP L +D   I  L++ G  + +ETNGT 
Sbjct: 44  GEMMTDE--DIVNE---IGKYPAVMVILTGGEPSLWIDDAFIDLLHRAGKYVCIETNGTK 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G +L +    E+K+V+   N+  + Y     E F LQP       
Sbjct: 99  PLPAAIDWVTCSPKQGVNLALNRMDEVKVVYEGQNI--DVYEQLPAEHFFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT   +    ++PKWRLS+QTHK I I
Sbjct: 153 NNTAETVDCVMRHPKWRLSLQTHKLINI 180


>gi|237708545|ref|ZP_04539026.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|265751292|ref|ZP_06087355.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229457474|gb|EEO63195.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263238188|gb|EEZ23638.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 181

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/205 (37%), Positives = 107/205 (52%), Gaps = 28/205 (13%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT     Q  +G   
Sbjct: 4   INEIFYSLQGEGYHTGIPAVFVRFSGCNL-----------RCPFCDT-----QHEEGTLM 47

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
           + + +A  +       +   +  +LTGGEP L +D  L+ AL+     + +ETNGT   P
Sbjct: 48  SDEDIAMEV------AKYSTQVVILTGGEPGLWIDEKLVDALHHERKYVCIETNGTCRLP 101

Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185
           + IDW+  SPK G  + +    E+K+V+   +VS   Y+      + LQP        NT
Sbjct: 102 ENIDWVTCSPKEGAKINLDRIDEVKVVYVGQDVSA--YLDLSASHYFLQPCSCA----NT 155

Query: 186 NLAISYCFQNPKWRLSVQTHKFIGI 210
              I+Y  Q+P+WRLS+QTHK + I
Sbjct: 156 EEVIAYILQHPEWRLSLQTHKLLQI 180


>gi|255013373|ref|ZP_05285499.1| hypothetical protein B2_05655 [Bacteroides sp. 2_1_7]
 gi|262381499|ref|ZP_06074637.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296676|gb|EEY84606.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 181

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/213 (37%), Positives = 109/213 (51%), Gaps = 36/213 (16%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        + 
Sbjct: 1   MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------RCSFCDTRH------EE 43

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           G    D+  +++E+         R  +LTGGEP L +D  LI  L + G +I +ETNGT 
Sbjct: 44  GVMMTDE--EIVEK---VSSFPARIVILTGGEPSLWIDKALISRLREAGKQICIETNGTR 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDW+  SPK    + ++   E+K+V          Y G D   ++  P    FL+
Sbjct: 99  PLPDGIDWVTCSPKENAPVVLERIDEIKVV----------YTGQDLSAYAEIPARYHFLQ 148

Query: 183 ----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               +NT   + Y  ++P+WRLS+QTHK I I+
Sbjct: 149 PCSCQNTKEVVDYILRHPRWRLSLQTHKLIDIQ 181


>gi|60682861|ref|YP_213005.1| hypothetical protein BF3399 [Bacteroides fragilis NCTC 9343]
 gi|60494295|emb|CAH09090.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
 gi|301164330|emb|CBW23888.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 181

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/208 (38%), Positives = 106/208 (50%), Gaps = 28/208 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        + 
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCDFCDTRH------EE 43

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           G    D+  D++ E    G+      +LTGGEP L +D   I  L++ G  + +ETNGT 
Sbjct: 44  GEMMTDE--DIVNE---IGKYPAVMVILTGGEPSLWIDDAFIDLLHRAGKYVCIETNGTK 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G +L +    E+K+V+   N+  + Y     E F LQP       
Sbjct: 99  PLPVAIDWVTCSPKQGVNLALNRMDEVKVVYEGQNI--DVYEQLPAEHFFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT   +    ++PKWRLS+QTHK I I
Sbjct: 153 NNTAETVDCVMRHPKWRLSLQTHKLINI 180


>gi|265766736|ref|ZP_06094565.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263253113|gb|EEZ24589.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 181

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/208 (38%), Positives = 105/208 (50%), Gaps = 28/208 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        + 
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCDFCDTRH------EE 43

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           G    D+  D++ E    G+      +LTGGEP L +D   I  L+  G  + +ETNGT 
Sbjct: 44  GEMMTDE--DIVNE---IGKYPAVMVILTGGEPSLWIDDAFIDLLHHAGKYVCIETNGTK 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G +L +    E+K+V+   N+  + Y     E F LQP       
Sbjct: 99  PLPAAIDWVTCSPKQGVNLALNRMDEVKVVYEGQNI--DVYEQLPAEHFFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT   +    ++PKWRLS+QTHK I I
Sbjct: 153 NNTAETVDCVMRHPKWRLSLQTHKLINI 180


>gi|256840895|ref|ZP_05546403.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738167|gb|EEU51493.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 181

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/213 (37%), Positives = 109/213 (51%), Gaps = 36/213 (16%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        + 
Sbjct: 1   MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------RCGFCDTRH------EE 43

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           G    D+  +++E+         R  +LTGGEP L +D  LI  L + G +I +ETNGT 
Sbjct: 44  GVMMTDE--EIVEK---VSSFPARMVILTGGEPSLWIDKALISRLREAGKQICIETNGTR 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDW+  SPK    + ++   E+K+V          Y G D   ++  P    FL+
Sbjct: 99  PLPDGIDWVTCSPKENAPVVLERVDEIKVV----------YTGQDLSAYAEIPARYHFLQ 148

Query: 183 ----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               +NT   + Y  ++P+WRLS+QTHK I I+
Sbjct: 149 PCSCQNTKEVVDYILRHPRWRLSLQTHKLIDIQ 181


>gi|150007939|ref|YP_001302682.1| hypothetical protein BDI_1300 [Parabacteroides distasonis ATCC
           8503]
 gi|149936363|gb|ABR43060.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
          Length = 181

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 109/213 (51%), Gaps = 36/213 (16%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        + 
Sbjct: 1   MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------RCGFCDTRH------EE 43

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           G    D+  +++E+         R  +LTGGEP L +D  LI  L + G ++ +ETNGT 
Sbjct: 44  GVMMTDE--EIVEK---VSSFPARMVILTGGEPSLWIDKSLISRLREAGKQVCIETNGTR 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDW+  SPK    + ++   E+K+V          Y G D   ++  P    FL+
Sbjct: 99  PLPDGIDWVTCSPKENAPVVLERVDEIKVV----------YTGQDLSAYAEIPARYHFLQ 148

Query: 183 ----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               +NT   + Y  ++P+WRLS+QTHK I I+
Sbjct: 149 PCSCQNTKEVVDYILRHPRWRLSLQTHKLIDIQ 181


>gi|218129819|ref|ZP_03458623.1| hypothetical protein BACEGG_01399 [Bacteroides eggerthii DSM 20697]
 gi|317475833|ref|ZP_07935090.1| radical SAM superfamily protein [Bacteroides eggerthii 1_2_48FAA]
 gi|217987929|gb|EEC54254.1| hypothetical protein BACEGG_01399 [Bacteroides eggerthii DSM 20697]
 gi|316907993|gb|EFV29690.1| radical SAM superfamily protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 181

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/213 (37%), Positives = 105/213 (49%), Gaps = 36/213 (16%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT     Q  +G
Sbjct: 1   MRKINEIFYSLQGEGFHTGTPAVFIRFSGCNL-----------KCSFCDT-----QHEEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + +++ D +      GE      +LTGGEP L +D   +  L++ G  + +ETNGT 
Sbjct: 45  VLMSDEEILDAV------GEYPATTVILTGGEPSLWIDREFVDRLHRIGKYVCIETNGTR 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G    I    E+K+V          Y G D   + L P    FL+
Sbjct: 99  ALPDNIDWVTCSPKQGAKPVISRMDEVKVV----------YEGQDITVYELLPAGHFFLQ 148

Query: 183 ----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                N    ++   Q+PKWRLS+QTHK I IR
Sbjct: 149 PCSCSNVAETVACVMQHPKWRLSLQTHKLIDIR 181


>gi|189467678|ref|ZP_03016463.1| hypothetical protein BACINT_04069 [Bacteroides intestinalis DSM
           17393]
 gi|189435942|gb|EDV04927.1| hypothetical protein BACINT_04069 [Bacteroides intestinalis DSM
           17393]
          Length = 181

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/213 (38%), Positives = 107/213 (50%), Gaps = 36/213 (16%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT     +  +G
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCSFCDT-----RHEEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + D++   +      G+      +LTGGEP L VD   I  L++ G  + +ETNGT 
Sbjct: 45  VLMSDDEIIAEV------GKYPAVTVILTGGEPSLWVDEAFIDRLHQAGKYVCIETNGTN 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G  L I    E+K+V          Y G D   + L P +  FL+
Sbjct: 99  PLPPNIDWVTCSPKQGVKLGITRMDEVKVV----------YEGQDIGVYELLPAEYFFLQ 148

Query: 183 ----ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                NT   ++   Q+PKWRLS+QTHK I IR
Sbjct: 149 PCSCSNTAETVACVMQHPKWRLSLQTHKLIDIR 181


>gi|298376475|ref|ZP_06986430.1| hypothetical protein HMPREF0104_02657 [Bacteroides sp. 3_1_19]
 gi|298266353|gb|EFI08011.1| hypothetical protein HMPREF0104_02657 [Bacteroides sp. 3_1_19]
          Length = 181

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/209 (36%), Positives = 106/209 (50%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF ++QGEG   G  AVF RFSGCNL           +C FCDT+       +G
Sbjct: 1   MKKINEIFYSIQGEGYFTGTPAVFVRFSGCNL-----------RCPFCDTEH-----KEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + D++   I            + VLTGGEP +QV   L+  +   G  + +ETNGT+
Sbjct: 45  KMLSDDEIIAEIRRY------PALHVVLTGGEPCMQVTYDLVDKIKATGRFVQIETNGTL 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
            PP  IDWI  SPK G    +    ELK+V+   ++S   Y  +    + LQP  G    
Sbjct: 99  VPPVNIDWITCSPKEGGKTVVINPNELKVVYTGQDMS--QYDKYSAGVYYLQPCSG---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT   I+Y  + PKW+LS+QTHK + +R
Sbjct: 153 RNTKEVINYIKEYPKWKLSLQTHKILNVR 181


>gi|260174975|ref|ZP_05761387.1| hypothetical protein BacD2_24170 [Bacteroides sp. D2]
 gi|315923210|ref|ZP_07919450.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697085|gb|EFS33920.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 181

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/209 (37%), Positives = 110/209 (52%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF ++QGEG   G  AVF RFSGCNL           +C FCDT          
Sbjct: 1   MKKINEIFYSIQGEGYRTGTPAVFVRFSGCNL-----------KCPFCDTQH------SS 43

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           GR   D+  ++I+E         R+ VLTGGEP LQVD   I  L++ G  + +ETNGT+
Sbjct: 44  GREMSDE--EIIKEVCFY---PTRFVVLTGGEPGLQVDQEFINKLHQAGKFVQIETNGTV 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDWI  SPK G  + +    E+K+V+   ++S   Y       + LQP       
Sbjct: 99  PLPIGIDWITCSPKEGSKVFVVNPHEIKVVYTGQDLS--TYEAMTAAVYYLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT   I+Y  ++PKW+LS+QT K + ++
Sbjct: 153 QNTEEVINYVKEHPKWKLSLQTQKILNVQ 181


>gi|167763255|ref|ZP_02435382.1| hypothetical protein BACSTE_01627 [Bacteroides stercoris ATCC
           43183]
 gi|167698549|gb|EDS15128.1| hypothetical protein BACSTE_01627 [Bacteroides stercoris ATCC
           43183]
          Length = 181

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 107/209 (51%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        + 
Sbjct: 1   MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------KCSFCDTQH------EE 43

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           G +  D+  +++ E    G+      +LTGGEP L +D   +  L++ G  + +ETNGT 
Sbjct: 44  GVWMSDE--EILAE---VGKYPAMTVILTGGEPSLWIDREFVDCLHRMGKYVCIETNGTH 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G  L I    E+K+V+   +++   Y       F LQP       
Sbjct: 99  SLPDNIDWVTCSPKQGAKLCISRMDEVKVVYEGQDIAV--YESLPAGHFFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT   ++   Q+PKWRLS+QTHK I I+
Sbjct: 153 SNTAETVACVMQHPKWRLSLQTHKLIEIK 181


>gi|319901441|ref|YP_004161169.1| Radical SAM domain protein [Bacteroides helcogenes P 36-108]
 gi|319416472|gb|ADV43583.1| Radical SAM domain protein [Bacteroides helcogenes P 36-108]
          Length = 181

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/209 (37%), Positives = 108/209 (51%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        + 
Sbjct: 1   MRKINEIFYSLQGEGYHTGIPAVFIRFSGCNL-----------KCSFCDTHH------EE 43

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           GR   D   +++EE     +      +LTGGEP L +D   +  L++ G  + +ETNGT 
Sbjct: 44  GRLMSDD--EIMEE---VRKYPAATVILTGGEPSLWIDSEFVDRLHRAGKYVCIETNGTH 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G +L+I G  E+K+V+   +++   Y       F LQP     + 
Sbjct: 99  PLPDNIDWVTCSPKLGGNLRITGMDEVKVVYEGQDITV--YEQLPAGHFFLQPCSCNNIG 156

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           E  +  +     +PKWRLS+QTHK I IR
Sbjct: 157 ETVDCVM----HHPKWRLSLQTHKLIDIR 181


>gi|329955365|ref|ZP_08296273.1| radical SAM domain protein [Bacteroides clarus YIT 12056]
 gi|328525768|gb|EGF52792.1| radical SAM domain protein [Bacteroides clarus YIT 12056]
          Length = 181

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 78/208 (37%), Positives = 105/208 (50%), Gaps = 28/208 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF R SGCNL           +C FCDT        + 
Sbjct: 1   MRKINEIFYSLQGEGFHTGTPAVFIRLSGCNL-----------KCPFCDTQH------EE 43

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           G    D+  +++ E    G+      +LTGGEP L +D   +  L++ G  + +ETNGT 
Sbjct: 44  GVLMTDE--EIMAE---VGKYPAMMVILTGGEPSLWIDREFVDRLHQLGKYVCIETNGTH 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           E P  IDW+  SPK G  L I    E+K+V+   +++   Y     + F LQP       
Sbjct: 99  ELPDNIDWVTCSPKRGAKLSISRMDEVKVVYESQDITV--YEQLPAKHFFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT   +    Q+PKWRLS+QTHK I I
Sbjct: 153 SNTVETVVRVMQHPKWRLSLQTHKLINI 180


>gi|270293623|ref|ZP_06199825.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275090|gb|EFA20950.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 181

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 105/209 (50%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        + 
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCPFCDTQH------ED 43

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           G    D+  D++ E     +      +LTGGEP L +D   +  L++ G  + +ETNGT 
Sbjct: 44  GILMSDE--DIVTE---VSKYPAATVILTGGEPSLWIDREFVDCLHQAGKYVCIETNGTR 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G  L+I    E+K+V+   +++   Y       F LQP       
Sbjct: 99  PLPDNIDWVTCSPKQGVKLEITRMNEVKVVYEGQDIT--VYEQLPAGHFFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT   +    ++PKWRLS+QTHK I IR
Sbjct: 153 SNTAETVDCVMKHPKWRLSLQTHKLIDIR 181


>gi|160888847|ref|ZP_02069850.1| hypothetical protein BACUNI_01266 [Bacteroides uniformis ATCC 8492]
 gi|156861746|gb|EDO55177.1| hypothetical protein BACUNI_01266 [Bacteroides uniformis ATCC 8492]
          Length = 181

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 104/209 (49%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        + 
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCPFCDTQH------ED 43

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           G    D+  D++ E            +LTGGEP L +D   +  L++ G  + +ETNGT 
Sbjct: 44  GILMSDE--DIVTE---VSRYPAATVILTGGEPSLWIDREFVDCLHQAGKYVCIETNGTH 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G  L+I    E+K+V+   +++   Y       F LQP       
Sbjct: 99  PLPDNIDWVTCSPKQGVKLEITRMNEVKVVYEGQDIT--VYEQLPAGHFFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT   +    ++PKWRLS+QTHK I IR
Sbjct: 153 SNTAETVDCVMKHPKWRLSLQTHKLIDIR 181


>gi|317479410|ref|ZP_07938544.1| radical SAM superfamily protein [Bacteroides sp. 4_1_36]
 gi|316904484|gb|EFV26304.1| radical SAM superfamily protein [Bacteroides sp. 4_1_36]
          Length = 181

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 104/209 (49%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        + 
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCLFCDTQH------ED 43

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           G    D+  D++ E            +LTGGEP L +D   +  L++ G  + +ETNGT 
Sbjct: 44  GILMSDE--DIVTE---VSRYPAATVILTGGEPSLWIDREFVDCLHQAGKYVCIETNGTR 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G  L+I    E+K+V+   +++   Y       F LQP       
Sbjct: 99  PLPDNIDWVTCSPKQGVKLEITRMNEVKVVYEGQDITV--YEQLPAGHFFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT   +    ++PKWRLS+QTHK I IR
Sbjct: 153 SNTAETVDCVMKHPKWRLSLQTHKLIDIR 181


>gi|262195340|ref|YP_003266549.1| radical SAM protein [Haliangium ochraceum DSM 14365]
 gi|262078687|gb|ACY14656.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365]
          Length = 211

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/228 (36%), Positives = 114/228 (50%), Gaps = 47/228 (20%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           Y +KEIF  TLQGEG HAGR  VF RF+GCNL           QC +CDTDF   +G + 
Sbjct: 9   YRVKEIFGPTLQGEGTHAGRACVFLRFAGCNL-----------QCSWCDTDF-SPEGAER 56

Query: 63  GRYNVDQLADLIEEQWITGEKEG-RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
            R      AD I E+ +  +  G R  ++TGGEP LQ D  L  AL   GF + +E+NGT
Sbjct: 57  LR------ADEITERLLALDVHGARTVIVTGGEPALQWDQELADALRAAGFRVHMESNGT 110

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS------------------PENY 163
             P   +DW+ VSPK    ++  G +E      +  VS                    +Y
Sbjct: 111 RPPRAPVDWLTVSPK----VQFHGPREALFASAEAAVSECKLVVDDSVSHDTLAALEHHY 166

Query: 164 IGFDFERFSLQP-MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            G D     LQP MD  + E++    ++   + P+WRLS+Q HK +G+
Sbjct: 167 EGAD---LLLQPCMDADY-EQHLARTLTLIGERPRWRLSLQLHKIVGV 210


>gi|255011037|ref|ZP_05283163.1| hypothetical protein Bfra3_17992 [Bacteroides fragilis 3_1_12]
 gi|313148842|ref|ZP_07811035.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137609|gb|EFR54969.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 181

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/210 (36%), Positives = 105/210 (50%), Gaps = 32/210 (15%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT          
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCDFCDT---------- 39

Query: 63  GRYNVDQLADLIEEQWITGEKE--GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
            R+   ++  + +E+ +   K+      +LTGGEP L +D   I  L+  G  + +ETNG
Sbjct: 40  -RHETGEM--MTDEEIVNEVKKYPAVMVILTGGEPSLWIDDAFIDLLHGAGKYVCIETNG 96

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T   P  IDW+  SPK G  L +    E+K+V+   N+  + Y     E F LQP     
Sbjct: 97  TKPLPAAIDWVTCSPKQGVKLALNRMDEVKVVYEGQNI--DVYEQLPAEHFFLQPCSC-- 152

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              NT   +    ++P+WRLS+QTHK I I
Sbjct: 153 --NNTAETVDCVMRHPRWRLSLQTHKLINI 180


>gi|329961992|ref|ZP_08300003.1| radical SAM domain protein [Bacteroides fluxus YIT 12057]
 gi|328530640|gb|EGF57498.1| radical SAM domain protein [Bacteroides fluxus YIT 12057]
          Length = 181

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/209 (36%), Positives = 107/209 (51%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT     Q  +G
Sbjct: 1   MRKINEIFYSLQGEGFHTGTPAVFIRFSGCNL-----------KCSFCDT-----QHEEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + D++ + +      G+      +LTGGEP L +D   +  L++ G  + +ETNGT 
Sbjct: 45  CLMSDDEIMEEV------GKYPAATVILTGGEPSLWIDGEFVDRLHRAGKYVCIETNGTR 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G  L I    E+K+V+   +++   Y       F LQP     + 
Sbjct: 99  LLPGNIDWVTCSPKQGTRLGIARMDEVKVVYEGQDIT--GYEQLPAAHFFLQPCSCNNIG 156

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           E  +  +    ++PKWRLS+QTHK I IR
Sbjct: 157 ETVDCVM----RHPKWRLSLQTHKLIDIR 181


>gi|282859352|ref|ZP_06268460.1| radical SAM domain protein [Prevotella bivia JCVIHMP010]
 gi|282587837|gb|EFB93034.1| radical SAM domain protein [Prevotella bivia JCVIHMP010]
          Length = 194

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/213 (37%), Positives = 106/213 (49%), Gaps = 28/213 (13%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF ++QGEG +AG  A+F RF+ CNL            C FCDTDFV        R+
Sbjct: 3   INEIFYSIQGEGFYAGTPAIFVRFAQCNL-----------NCAFCDTDFV--------RF 43

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
                 +++ E    G     + +LTGGEP LQV   L   L++ G  I +ETNGT    
Sbjct: 44  TEMTEEEIVAEVCRIGNP-ATHVILTGGEPSLQVTASLCDKLHEAGKVIHIETNGTHAVA 102

Query: 126 QGIDWICVSPK----AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           +GID+I  SPK       +L ++   ELK+VF   N     Y     + + LQP D    
Sbjct: 103 EGIDFITCSPKLEYCKHAELCVQRIDELKVVFTGKN-DMALYENIQAQHYFLQPCDVGND 161

Query: 182 EENTNL---AISYCFQNPKWRLSVQTHKFIGIR 211
            EN  +    + YC  NPKW +SVQ HK + IR
Sbjct: 162 AENGRIIAATVGYCKANPKWNISVQIHKVLAIR 194


>gi|218259962|ref|ZP_03475458.1| hypothetical protein PRABACTJOHN_01119 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224823|gb|EEC97473.1| hypothetical protein PRABACTJOHN_01119 [Parabacteroides johnsonii
           DSM 18315]
          Length = 180

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/205 (38%), Positives = 104/205 (50%), Gaps = 29/205 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        + G  
Sbjct: 4   INEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------KCSFCDTRH------EEGIL 46

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
             D+  D+++             +LTGGEP L +D   I  L+  G  I +ETNGT   P
Sbjct: 47  MSDE--DILQA---ISAFPSNVVILTGGEPSLWIDQTFIDLLHMAGKYICIETNGTNPLP 101

Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185
           +GIDW+  SPK G  L++    E+K+V+   +++   Y G +     LQP        NT
Sbjct: 102 EGIDWVTCSPK-GFPLRLAHIDEVKVVYTGQDLT--EYAGLEATWHFLQPCSC----LNT 154

Query: 186 NLAISYCFQNPKWRLSVQTHKFIGI 210
              + Y   +P+WRLS+QTHK I I
Sbjct: 155 KEVVEYILHHPQWRLSLQTHKLIDI 179


>gi|198274527|ref|ZP_03207059.1| hypothetical protein BACPLE_00675 [Bacteroides plebeius DSM 17135]
 gi|198272581|gb|EDY96850.1| hypothetical protein BACPLE_00675 [Bacteroides plebeius DSM 17135]
          Length = 181

 Score =  114 bits (286), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 106/209 (50%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + EIF ++QGEG H G  AVF RFSGCNL           +C FCDT        + 
Sbjct: 1   MKKVNEIFYSIQGEGYHTGTPAVFVRFSGCNL-----------KCPFCDTQH------ED 43

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           G    D+  +++ E    G+      +LTGGEP L +D   +  L++ G  + +ETNGT 
Sbjct: 44  GILMSDE--EILSE---VGKYPAVMVILTGGEPSLWIDREFVDRLHRIGKYVCIETNGTR 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G +  +    E+K+V+   ++S   Y       + LQP       
Sbjct: 99  SLPNNIDWVTCSPKEGSNAIVVNPHEIKVVYTGQDLS--TYEEMTAAVYYLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT   I Y  ++PKW+LS+QT K + +R
Sbjct: 153 QNTEEVIDYIKKHPKWKLSLQTQKILNVR 181


>gi|319642227|ref|ZP_07996886.1| hypothetical protein HMPREF9011_02486 [Bacteroides sp. 3_1_40A]
 gi|317386083|gb|EFV67003.1| hypothetical protein HMPREF9011_02486 [Bacteroides sp. 3_1_40A]
          Length = 181

 Score =  114 bits (285), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 106/209 (50%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + EIF ++QGEG H G  AVF RFSGCNL           +C FCDT        + 
Sbjct: 1   MKKVNEIFYSIQGEGYHTGTPAVFVRFSGCNL-----------KCPFCDTQH------ED 43

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           G    D+  +++ E    G+      +LTGGEP L +D   +  L++ G  + +ETNGT 
Sbjct: 44  GILMSDE--EILSE---VGKYPAVMVILTGGEPSLWIDREFVDRLHRIGKYVCIETNGTR 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G +  +    E+K+V+   ++S   Y       + LQP       
Sbjct: 99  SLPNNIDWVTCSPKEGSNAIVVNPHEIKVVYTGQDLS--TYEEMTAAVYYLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT   I Y  ++PKW+LS+QT K + +R
Sbjct: 153 QNTEEVIGYIKKHPKWKLSLQTQKILNVR 181


>gi|154490137|ref|ZP_02030398.1| hypothetical protein PARMER_00367 [Parabacteroides merdae ATCC
           43184]
 gi|154089029|gb|EDN88073.1| hypothetical protein PARMER_00367 [Parabacteroides merdae ATCC
           43184]
          Length = 180

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/205 (37%), Positives = 102/205 (49%), Gaps = 29/205 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        + G  
Sbjct: 4   INEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------KCSFCDTRH------EEGIL 46

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
             D+  D+++             +LTGGEP L +D   I  L+  G  I +ETNGT   P
Sbjct: 47  MSDE--DILQA---ISAFPSNVVILTGGEPSLWIDQTFIDLLHMAGKYICIETNGTNPLP 101

Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185
           +GIDW+  SPK G  L++    E+K+V+   +++   Y G       LQP        NT
Sbjct: 102 EGIDWVTCSPK-GFPLRLTHIDEIKVVYTGQDLT--EYAGLKATWHFLQPCSC----LNT 154

Query: 186 NLAISYCFQNPKWRLSVQTHKFIGI 210
              + Y   +P+W LS+QTHK I I
Sbjct: 155 KEVVEYILHHPQWHLSLQTHKLIDI 179


>gi|34557972|ref|NP_907787.1| organic radical activating enzyme [Wolinella succinogenes DSM 1740]
 gi|34483690|emb|CAE10687.1| conserved hypothetical protein-Organic radical activating enzymes
           [Wolinella succinogenes]
          Length = 193

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/211 (36%), Positives = 102/211 (48%), Gaps = 22/211 (10%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y + EIF ++QGEG H+G+ A+F R  GCNL            C FCD        T+G
Sbjct: 1   MYPVTEIFYSIQGEGHHSGKAALFVRLHGCNL-----------ACDFCDEP----SHTQG 45

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG-T 121
              N  Q A  I EQ         + V+TGGEP L    PLI+ L K G+ +A+ETNG  
Sbjct: 46  EYENQSQEA--ILEQ--LRAYPAHFVVITGGEPTLFDLNPLIKFLQKEGYFVAIETNGYN 101

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM-DGPF 180
           +   Q  DWI  SPK    L  +G  ELK +    +        F  +   LQP  DG  
Sbjct: 102 LAHIQAADWITYSPKNWNTLAKEGYDELKFIIHHASDITPLLALFQEKPLYLQPQSDGSA 161

Query: 181 LE-ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           L   N    +    ++P+WRLS+QTHK + I
Sbjct: 162 LNAANVARCVELILEHPEWRLSLQTHKILEI 192


>gi|167754369|ref|ZP_02426496.1| hypothetical protein ALIPUT_02663 [Alistipes putredinis DSM 17216]
 gi|167658994|gb|EDS03124.1| hypothetical protein ALIPUT_02663 [Alistipes putredinis DSM 17216]
          Length = 194

 Score =  104 bits (259), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 112/219 (51%), Gaps = 40/219 (18%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF ++QGEG + G  A+F R +GCNL           +C FCDT+    Q       
Sbjct: 3   VNEIFYSIQGEGRYTGTPAIFIRLAGCNL-----------RCDFCDTEHQPYQ------- 44

Query: 66  NVDQLADLIEEQWI--TGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGFEIAVETNGTI 122
                 DL EE+ +    +    + V+TGGEP+LQ+   LI  L N  G  + VETNGTI
Sbjct: 45  ------DLTEEEIMRQIADFPTSHVVITGGEPMLQITQSLIHRLRNGAGKFVQVETNGTI 98

Query: 123 EPPQ---GIDWICVSPK----AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
            P +    +DWI  SPK       +L+++   ELK+V+   +++   Y G + + + LQP
Sbjct: 99  -PIKCYLPVDWITCSPKFDFCPHAELRLQRIDELKVVYQGQDMTA--YDGIEAKEYYLQP 155

Query: 176 ---MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               D     EN    I+Y   +PKW+LS+QT K + +R
Sbjct: 156 CDFKDEARNAENLAATINYIKSHPKWKLSLQTQKILSVR 194


>gi|317505338|ref|ZP_07963266.1| GntS protein [Prevotella salivae DSM 15606]
 gi|315663552|gb|EFV03291.1| GntS protein [Prevotella salivae DSM 15606]
          Length = 141

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/136 (44%), Positives = 82/136 (60%), Gaps = 7/136 (5%)

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAG 138
           I+  K+  + VLTGGEP LQVD  LI AL+  GF +A+E+NGT  PPQ +DW+ VSPK  
Sbjct: 10  ISKWKKAGFVVLTGGEPTLQVDDKLIDALHASGFYVAMESNGTRVPPQNLDWLTVSPKGS 69

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL---AISYCFQN 195
             + +    ELK +F   ++  +  I  D+  + LQP D     +N  +    ISY   +
Sbjct: 70  --VVVTKCNELKCIFDGESMVDDAGIQADY--YYLQPCDVGDKAKNQVILQACISYILSH 125

Query: 196 PKWRLSVQTHKFIGIR 211
           PKWRLS+QTHK IGI+
Sbjct: 126 PKWRLSLQTHKMIGIQ 141


>gi|34540794|ref|NP_905273.1| hypothetical protein PG1057 [Porphyromonas gingivalis W83]
 gi|34397108|gb|AAQ66172.1| conserved hypothetical protein [Porphyromonas gingivalis W83]
          Length = 197

 Score =  101 bits (252), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 106/222 (47%), Gaps = 45/222 (20%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF +LQGEG + GR AVF R +GCNL            C +CDTDF      +G + 
Sbjct: 3   VNEIFHSLQGEGANTGRAAVFVRLAGCNL-----------ACPYCDTDFA-----QGKKM 46

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
           +++++A  IE          R+ + TGGEP LQ+        ++ G+  A+ETNGT   P
Sbjct: 47  SLEEIARSIEHY------PTRFLIWTGGEPTLQLTEEATAYFHRLGYFQAIETNGTRPVP 100

Query: 126 QGIDWICVSPKAGCDLKIK-----GGQELKLVF-------PQVNVSPENYIGFDFERFSL 173
           +GID+I  SPK G   K+K     G  E +          P ++  P        + + +
Sbjct: 101 KGIDYISCSPKTGAIGKLKENFPDGVGEFRFPLGSDTPLPPPIDELPTA------QHYLV 154

Query: 174 QPM-DGPFLEENTNLAISYCFQ----NPKWRLSVQTHKFIGI 210
            P+  G    E    AI+ C +     P WRLS+Q HK I I
Sbjct: 155 SPIFAGDDAMEPDPSAITRCVEFVKAFPAWRLSIQMHKLIHI 196


>gi|313886424|ref|ZP_07820143.1| radical SAM domain protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924105|gb|EFR34895.1| radical SAM domain protein [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 201

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 106/229 (46%), Gaps = 46/229 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M+   + EIF +LQGEGG  GR  +F R SGCNL            C +CDTDF G Q  
Sbjct: 1   MQPLPVNEIFYSLQGEGGQMGRAMLFVRLSGCNL-----------TCDYCDTDFAGHQLM 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
                  + LA L       G    R  + TGGEP L +    I   ++ G+  ++ETNG
Sbjct: 50  TAS----EILAQL-------GSYPCRDILWTGGEPTLALREEHIAFFHEHGYRQSIETNG 98

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQE----------------LKLVFPQVNVSPENYI 164
           T   PQG+D++  SPK      I G +E                L+L  P   + P    
Sbjct: 99  TRPVPQGLDYVTCSPKPEA---ISGLRERFVDNYPDGIDEVRWPLQLGAP---LPPPIEQ 152

Query: 165 GFDFERFSLQPMDGPFLEENTNLA--ISYCFQNPKWRLSVQTHKFIGIR 211
             +  R+ + P++   +E +  +A  + +   +P+WRLSVQ HK +G R
Sbjct: 153 LVEARRYYVSPVEETGVEMSAVVARCMDFVLAHPEWRLSVQLHKLLGFR 201


>gi|332177919|gb|AEE13609.1| Radical SAM domain protein [Porphyromonas asaccharolytica DSM
           20707]
          Length = 201

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 106/229 (46%), Gaps = 46/229 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M+   + EIF +LQGEGG  GR  +F R SGCNL            C +CDTDF G Q  
Sbjct: 1   MQPLPVNEIFYSLQGEGGQMGRAMLFVRLSGCNL-----------TCDYCDTDFAGHQLM 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
                  + LA L       G    R  + TGGEP L +    I   ++ G+  ++ETNG
Sbjct: 50  TAS----EILAQL-------GSYPCRDILWTGGEPTLALREEHIAFFHEHGYRQSIETNG 98

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQE----------------LKLVFPQVNVSPENYI 164
           T   PQG+D++  SPK      I G +E                L+L  P   + P    
Sbjct: 99  TRPMPQGLDYVTCSPKPEA---ISGLRERFVDNYPDGIDEVRWPLQLGAP---LPPPIEQ 152

Query: 165 GFDFERFSLQPMDGPFLEENTNLA--ISYCFQNPKWRLSVQTHKFIGIR 211
             +  R+ + P++   +E +  +A  + +   +P+WRLSVQ HK +G R
Sbjct: 153 LAEARRYYVSPVEETGVEMSAVVARCMDFVLAHPEWRLSVQLHKLLGFR 201


>gi|187251045|ref|YP_001875527.1| putative 6- pyruvoyltetrahydropterin 2-reductase [Elusimicrobium
           minutum Pei191]
 gi|186971205|gb|ACC98190.1| Putative 6- pyruvoyltetrahydropterin 2-reductase [Elusimicrobium
           minutum Pei191]
          Length = 195

 Score = 97.8 bits (242), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 73/213 (34%), Positives = 106/213 (49%), Gaps = 30/213 (14%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + EIF +LQGEG + G  AVF R SGC +            C FCDTDF         
Sbjct: 6   FKLTEIFYSLQGEGMYTGTAAVFVRLSGCLMG-----------CSFCDTDF--------K 46

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
              V    ++I+E     +   +  ++TGGEP  Q    LI++L + G ++ +ETNG+I 
Sbjct: 47  ENFVMTSEEIIKE---VKKYPSKIVIITGGEPAEQDICALIKSLKQAGLKVHIETNGSIY 103

Query: 124 -PPQGIDWICVSPKAGCDLK-IKGGQELKLVFPQ-VNVSP-ENYIGFDFE--RFSLQPMD 177
              QG+D + VSPK   D   +K    +K+V  Q  ++S  + Y  +  E     LQP  
Sbjct: 104 FDAQGVDNLTVSPKTYVDPNMLKSAHVIKIVVGQDTDISDLKKYFNYASEGRLIYLQPES 163

Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               +EN +L +    +NP  RLS+QTHKF  I
Sbjct: 164 NK--QENIDLCVKLIKENPFLRLSLQTHKFAKI 194


>gi|56750231|ref|YP_170932.1| hypothetical protein syc0222_c [Synechococcus elongatus PCC 6301]
 gi|81300141|ref|YP_400349.1| hypothetical protein Synpcc7942_1332 [Synechococcus elongatus PCC
           7942]
 gi|56685190|dbj|BAD78412.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81169022|gb|ABB57362.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 206

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 102/218 (46%), Gaps = 37/218 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E F ++QGEG   G  A F R +GC++            C +CDT     Q     R+
Sbjct: 14  IVETFHSVQGEGAWMGCSAFFIRLAGCDV-----------GCPWCDTK----QSWPRDRH 58

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
               +ADL+E        + ++ V+TGGEPLL     L  AL  +G    +ET+G+  P 
Sbjct: 59  PEVAIADLVEA---AVAAQPQFVVITGGEPLLHDLTELTNALRSQGLRCHLETSGSASPS 115

Query: 126 QGIDWICVSP---KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF---ERFSLQPMDGP 179
              DW+ +SP   KA          ELK+V        +    FDF   E  ++      
Sbjct: 116 GSFDWVTLSPKPFKAVVAANYNWANELKVVI-------QTDADFDFAEQEAIAVPETTLK 168

Query: 180 FLE------ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            L+      E+ +  ++Y  Q+P+WR+S+QTHKF+G+R
Sbjct: 169 LLQPEWNSPESCDRVVNYVRQHPRWRVSLQTHKFLGVR 206


>gi|228469718|ref|ZP_04054686.1| organic radical activating enzyme [Porphyromonas uenonis 60-3]
 gi|228308737|gb|EEK17463.1| organic radical activating enzyme [Porphyromonas uenonis 60-3]
          Length = 201

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 46/229 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M+   + EIF +LQGEGG  GR  +F R SGCNL            C +CDTDF G    
Sbjct: 1   MQSLPVNEIFYSLQGEGGQMGRAMLFVRLSGCNL-----------ACDYCDTDFAG---- 45

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
               + +  +A+++ +         R  + TGGEP L +    I   +++G+  ++ETNG
Sbjct: 46  ----HRLMTVAEILAK---LESYPCRDILWTGGEPTLALREEHIAFFHEQGYRQSIETNG 98

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQE----------------LKLVFPQVNVSPENYI 164
           T   P+G+D++  SPKA     I G +E                L+L  P   + P    
Sbjct: 99  TRPVPRGLDYVTCSPKAEA---ISGLRERFVDNYPDGIDEVRWPLQLGAP---LPPPIEQ 152

Query: 165 GFDFERFSLQPMDGPFLEENTNLA--ISYCFQNPKWRLSVQTHKFIGIR 211
                R+ + P++   +E +  +A  + +   +P+WRLSVQ HK +G R
Sbjct: 153 LVQARRYYVSPVEETGVEMSAVVARCMDFVLAHPEWRLSVQLHKLLGFR 201


>gi|188995161|ref|YP_001929413.1| hypothetical protein PGN_1297 [Porphyromonas gingivalis ATCC 33277]
 gi|188594841|dbj|BAG33816.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
           33277]
          Length = 197

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 104/222 (46%), Gaps = 45/222 (20%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGEG + GR AVF R +GCNL            C +CDTDF      +G + 
Sbjct: 3   INEIFHSLQGEGANTGRAAVFVRLAGCNL-----------ACPYCDTDFA-----QGKKM 46

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
           +++++A  IE          R+ + TGGEP LQ+        ++ G+  A+ETNGT   P
Sbjct: 47  SLEEIARSIEHY------PTRFLIWTGGEPTLQLTEEATAYFHRLGYYQAIETNGTRLVP 100

Query: 126 QGIDWICVSPKAGCDLKIK-----GGQELKLVF-------PQVNVSPENYIGFDFERFSL 173
           +GID+I  SPK     K+K     G  E +          P ++  P        + + +
Sbjct: 101 KGIDYISCSPKPEAIGKLKENFPDGVGEFRFPLGSDTPLPPPIDELPTA------QHYLV 154

Query: 174 QPM-DGPFLEENTNLAISYCFQ----NPKWRLSVQTHKFIGI 210
            P+  G    E    AI+ C +     P W LS+Q HK I I
Sbjct: 155 SPIFAGDDAMEPDPSAITRCVEFVKAFPAWCLSIQMHKLIHI 196


>gi|256425881|ref|YP_003126534.1| hypothetical protein Cpin_6932 [Chitinophaga pinensis DSM 2588]
 gi|256040789|gb|ACU64333.1| conserved hypothetical protein [Chitinophaga pinensis DSM 2588]
          Length = 209

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 102/212 (48%), Gaps = 26/212 (12%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F TLQGEG + G+ A F R  GC++            C +CD      +     R+
Sbjct: 16  VMERFYTLQGEGNYQGQAAYFIRLGGCDV-----------GCHWCDVK----ESWDASRH 60

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
            +  +++L+ +        GR  V+TGGEPL+    PL  AL+   F   +ET+G+    
Sbjct: 61  PLIAISELVRD---AAVHPGRIAVITGGEPLMHNLDPLTDALHAASFRTHMETSGSSPLS 117

Query: 126 QGIDWICVSP---KAGCDLKIKGGQELKLV-FPQVNVS-PENYIGF--DFERFSLQPMDG 178
              DWI +SP   KA      +   ELK+V F + + +  E Y        +  LQP + 
Sbjct: 118 GHWDWITLSPKKFKAPLPEVCEVAHELKVVIFNKSDFAWAEKYAALAGPHCKLYLQP-EW 176

Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               + T L I Y  +NPKW+LS+QTHK+I +
Sbjct: 177 EKSAQVTPLIIDYIKENPKWQLSLQTHKYINV 208


>gi|116071889|ref|ZP_01469157.1| possible organic radical activating enzyme [Synechococcus sp.
           BL107]
 gi|116065512|gb|EAU71270.1| possible organic radical activating enzyme [Synechococcus sp.
           BL107]
          Length = 205

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 106/221 (47%), Gaps = 39/221 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F +LQGEG H GR A F R +GCN+            C +CDT       +   + 
Sbjct: 9   VVETFHSLQGEGHHCGRSAFFIRLAGCNV-----------GCAWCDTKHSWPMASH-AKQ 56

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTIEP 124
           +VD LA    +    G     + V+TGGEPL     PL  AL++  G  I +ET+G  + 
Sbjct: 57  DVDGLARQARQAKDAG---AAFVVITGGEPLHHNLQPLTDALDRICGLPIHLETSGVDQL 113

Query: 125 PQGIDWICVSPK----------AGCDLKIKGGQELKLVFPQV-NVSPENYIGFDFERFS- 172
               DW+ +SPK          + CD       ELK+V     +VS  + +  D    + 
Sbjct: 114 SGRFDWVTLSPKRHRPPQQALLSRCD-------ELKVVVLDTDDVSFAHAMANDTSTATH 166

Query: 173 --LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             +QP+     E   +LAI +  Q+P+WRLS+Q+HKF+ IR
Sbjct: 167 LLVQPVWDS--ETAQDLAIHHVQQHPRWRLSLQSHKFLQIR 205


>gi|313203030|ref|YP_004041687.1| radical sam domain protein [Paludibacter propionicigenes WB4]
 gi|312442346|gb|ADQ78702.1| Radical SAM domain protein [Paludibacter propionicigenes WB4]
          Length = 209

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 108/227 (47%), Gaps = 46/227 (20%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           L ++ EIF ++QGEG +AGR AVF R S CN             C +CDTD+     +KG
Sbjct: 9   LLNVVEIFHSIQGEGANAGRSAVFVRLSNCN-----------KNCWYCDTDW-----SKG 52

Query: 63  GRYNVDQLADLIEEQWITGEKE--GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
              +V Q+  L E     G+K+      + TGGEP LQ+   ++   ++  +   +ETNG
Sbjct: 53  ETMSVSQI--LAEVNKFVGKKDYPNNLIIWTGGEPTLQLTDEILSHFSE--YYNCIETNG 108

Query: 121 TIEPPQGIDWICVSPKAGCDL---KIKGGQELKL------VFPQVNVSP--ENYI----- 164
           T   P  I +I  SPK   ++     K   E +       V P +   P  +NYI     
Sbjct: 109 TNPVPSLIKYISCSPKVKPEVLRKNFKHVNEFRYPIGDGDVLPDIAELPAADNYIVSPIF 168

Query: 165 -GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            G   +RF         ++EN   AI +  +NP+WRLS+Q HK + I
Sbjct: 169 LGEAKKRFEQ-------VDENVKYAIDFVKKNPRWRLSLQLHKLLNI 208


>gi|240949106|ref|ZP_04753454.1| hypothetical protein AM305_01574 [Actinobacillus minor NM305]
 gi|240296501|gb|EER47133.1| hypothetical protein AM305_01574 [Actinobacillus minor NM305]
          Length = 206

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 113/226 (50%), Gaps = 47/226 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  ++F RF  CNL            C +CDT +      +  
Sbjct: 8   YPIVEIFESLQGEGFNTGMPSIFIRFGKCNL-----------TCSWCDTPY-----HQFD 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + + Q+ + +E        + +  ++TGGEP +Q ++  L+  L +RG+ +A+ETNG  
Sbjct: 52  SWTLTQILEKVEGY------QAKNIIITGGEPTIQPNLTVLLDELKQRGYFLAIETNGLK 105

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--------DFE 169
           + P  ID+I  SPK     K     I    E+++      V+ EN I F        + E
Sbjct: 106 DIPTQIDYIATSPKRLYAKKYQRRCIPFAHEVRI------VADENVIAFCEQIETQINAE 159

Query: 170 RFSLQP--MDGP--FLEENTNLAISYCFQN-PKWRLSVQTHKFIGI 210
           R+ L P  ++G    LE  T + +    +N PKW+LS+QTHK +GI
Sbjct: 160 RYYLSPCEVEGKMNLLETITQIGLLNQRKNKPKWQLSIQTHKIVGI 205


>gi|121533882|ref|ZP_01665708.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
 gi|121307393|gb|EAX48309.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
          Length = 196

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 98/220 (44%), Gaps = 43/220 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y + EIF ++QGEG H G  A F R +GCNL           +CR+CDT           
Sbjct: 6   YPVVEIFTSIQGEGTHMGLPAAFIRLAGCNL-----------RCRWCDT-VHAFDPANAT 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
               D++A  +  Q +         V+TGGEP L    PL+ AL+ RG  +A+ETNGT  
Sbjct: 54  YLTPDEIATGLAPQLV---------VITGGEPTLHDLGPLVAALHARGKYVAIETNGTNP 104

Query: 124 PPQ--GIDWICVSPKAGC---------DLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
            P+  GIDW+  SPK            +LK     E  L     +  P   I    E  S
Sbjct: 105 IPEKWGIDWVTASPKPNSGYLLACQADELKYVVDDEFTLDCVADDAVPPGRIFLQVE--S 162

Query: 173 LQPMDGPFLEENTNLAISYCFQNPK--WRLSVQTHKFIGI 210
            +P       E+   A +   +NP+   RL +Q HK +G+
Sbjct: 163 ARP-------ESAKKAFALVMENPERGLRLGIQLHKILGV 195


>gi|78185803|ref|YP_378237.1| organic radical activating protein [Synechococcus sp. CC9902]
 gi|78170097|gb|ABB27194.1| possible organic radical activating enzyme [Synechococcus sp.
           CC9902]
          Length = 205

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 104/222 (46%), Gaps = 41/222 (18%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F +LQGEG H GR A F R +GCN+            C +CDT           + 
Sbjct: 9   VVETFHSLQGEGHHYGRSAFFIRLAGCNV-----------GCTWCDTKHSWPMANH-AKQ 56

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTIEP 124
           +VD LA    +    G     + V+TGGEPL     PL  AL++  G  I +ET+G  + 
Sbjct: 57  DVDALAVQATQAKDAG---AAFVVITGGEPLHHNLQPLTDALDRSCGLPIHLETSGVDQL 113

Query: 125 PQGIDWICVSPK----------AGCDLKIKGGQELKLVFPQV-NVSPENYIGFDFE---R 170
               DW+ +SPK          + CD       ELK+V     +VS  + +  D      
Sbjct: 114 SGRFDWVTLSPKRHHPPQQALLSRCD-------ELKVVVLDTDDVSFAHAMANDTSTAAH 166

Query: 171 FSLQPM-DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             +QP+ D    +E   LAI +  Q+P+WRLS+Q HKF+ IR
Sbjct: 167 LLVQPVWDSETAQE---LAIHHVKQHPRWRLSLQNHKFLQIR 205


>gi|78214102|ref|YP_382881.1| organic radical activating protein [Synechococcus sp. CC9605]
 gi|78198561|gb|ABB36326.1| possible organic radical activating enzyme [Synechococcus sp.
           CC9605]
          Length = 205

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 111/222 (50%), Gaps = 41/222 (18%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG-R 64
           + E F +LQGEG HAGR A F R +GC +            C +CDT       +KG   
Sbjct: 9   VVETFHSLQGEGHHAGRSAFFIRLAGCTV-----------GCPWCDTKHS--WPSKGHPE 55

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTIE 123
             +D LAD  +   + GE    + V+TGGEPL     PL QAL+ R G  + +ET+G ++
Sbjct: 56  QPIDALADAAQ---MAGEVGAGFVVITGGEPLHHDLQPLTQALDARCGLPLHLETSG-VD 111

Query: 124 PPQG-IDWICVSPKAGCDLK---IKGGQELKLVFPQVNVSPENYIGF----------DFE 169
           P  G  DWI +SPK     +   ++   ELK+V       PE+ I F          D E
Sbjct: 112 PISGRFDWITLSPKRHRPPRQELLQACHELKVVV----HGPED-ISFAAAMASQCENDTE 166

Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           R  LQP  G        LA+ +  Q+ +WRLS+Q+HK++ IR
Sbjct: 167 RL-LQP--GWECSIGEALAVEHVRQHSRWRLSMQSHKWLRIR 205


>gi|223041979|ref|ZP_03612163.1| hypothetical protein AM202_0574 [Actinobacillus minor 202]
 gi|223017236|gb|EEF15664.1| hypothetical protein AM202_0574 [Actinobacillus minor 202]
          Length = 206

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 112/226 (49%), Gaps = 47/226 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  ++F RF  CNL            C +CDT +      +  
Sbjct: 8   YPIVEIFESLQGEGFNTGMPSIFIRFGKCNL-----------TCSWCDTPY-----HQFD 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + + Q+ + +E        + +  ++TGGEP +Q ++  L+  L +RG+ +A+ETNG  
Sbjct: 52  SWTLPQILEKVEGY------QAKNIIITGGEPTIQPNLTVLLDELKRRGYFLAIETNGLK 105

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--------DFE 169
           + P  ID+I  SPK     K     I    E+++      V+ EN I F          E
Sbjct: 106 DIPSQIDYIATSPKRLYAEKYQRRCIPFAHEVRI------VADENVIAFCEQIEAQISAE 159

Query: 170 RFSLQP--MDGP--FLEENTNLAISYCFQN-PKWRLSVQTHKFIGI 210
           R+ L P  ++G    LE  T + +    +N PKW+LS+QTHK +GI
Sbjct: 160 RYYLSPCEVEGKMNLLETITQIGLLNQRKNKPKWQLSIQTHKIVGI 205


>gi|52425912|ref|YP_089049.1| NrdG protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307964|gb|AAU38464.1| NrdG protein [Mannheimia succiniciproducens MBEL55E]
          Length = 224

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 105/226 (46%), Gaps = 47/226 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G   +F RF  CNL            C +CDTD+         
Sbjct: 26  YPIVEIFESLQGEGFNTGMPCIFVRFGKCNL-----------ACPWCDTDY--------E 66

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTI 122
           R+    L  ++E+         +  ++TGGEP +Q ++ L+ A  KR G+ +A+ETNG  
Sbjct: 67  RFEYRTLQQIVEK---VRSFSAKNIIITGGEPTIQPNISLLLAQFKRDGYFLAIETNGLR 123

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI-----GFDFERFS 172
             P  ID+I  SPKA    K     I    E+++V   ++   EN+          ER+ 
Sbjct: 124 AVPPQIDYISASPKAMYAEKYRRRCIDFAHEVRIV---MDADAENFCQQIEQKIRAERYY 180

Query: 173 LQPMDGPFLEENTNLAISYCF--------QNPKWRLSVQTHKFIGI 210
           L P +   +E   NL  +             PKW+LS+QTHK  GI
Sbjct: 181 LSPCE---IEGKMNLLETIALLGKLNQRPNKPKWQLSIQTHKLAGI 223


>gi|313676966|ref|YP_004054962.1| radical sam domain protein [Marivirga tractuosa DSM 4126]
 gi|312943664|gb|ADR22854.1| Radical SAM domain protein [Marivirga tractuosa DSM 4126]
          Length = 207

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 104/214 (48%), Gaps = 30/214 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F T+QGEG H+G+ A F R  GC++            C +CD            ++
Sbjct: 14  LMESFYTIQGEGFHSGKAAYFIRLGGCDV-----------GCVWCDVK----DSWDADKW 58

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
            + ++ D++++ +   + E R  V+TGGEP +     L + L ++GF + VET+G     
Sbjct: 59  PLKKIDDIVDDAY---QYESRLAVITGGEPFMYDMHGLTKRLLQKGFHVNVETSGAHPFT 115

Query: 126 QGIDWICVSP---KAGCDLKIKGGQELKLV------FPQVNVSPENYIGFDFERFSLQPM 176
             +DW+C+SP   KA  +       ELK++      F       E  +G D  +  LQP 
Sbjct: 116 GMVDWVCLSPKKFKAPLEHWYDRADELKIIIFNKSDFKWAEEHAEK-VGSDC-KLMLQP- 172

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    EE   L + Y  +NP W +S+QTHK++ I
Sbjct: 173 EWSKREEMMPLIVEYVKENPNWGISLQTHKYLQI 206


>gi|262341203|ref|YP_003284058.1| radical SAM domain-containing protein [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272540|gb|ACY40448.1| radical SAM domain-containing protein [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 201

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 104/223 (46%), Gaps = 36/223 (16%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  + IKE F ++QGEG + G  A F RF GCN+           +C +CDT     +  
Sbjct: 1   MISFPIKESFYSIQGEGFYYGMAAFFIRFEGCNI-----------KCDWCDTK----ESW 45

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           K  + +   + ++I           +  V+TGGEP++     L + L K+G+ I VET+G
Sbjct: 46  KIKKKDFIPIHEIINH---ISNYTVKNIVITGGEPMMWNLYHLTKILKKKGYRIHVETSG 102

Query: 121 TIEPPQG-IDWICVSPKA---GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
           T    +  +DWI VSPK      +   K   ELK++     +S E    F  E+      
Sbjct: 103 TYPIEEKYMDWITVSPKKIKLPLEENYKKTNELKII-----ISNEKDFLFAEEQAIHVKT 157

Query: 177 DGPFL---EENTNLA------ISYCFQNPKWRLSVQTHKFIGI 210
              FL    E TN        ISY  +NPKWR+S+Q HK + I
Sbjct: 158 TNCFLFLQPEWTNFVTIFPKIISYIKENPKWRISLQIHKMLNI 200


>gi|219871538|ref|YP_002475913.1| anaerobic ribonucleotide reductase activating protein NrdG
           [Haemophilus parasuis SH0165]
 gi|219691742|gb|ACL32965.1| anaerobic ribonucleotide reductase activating protein NrdG
           [Haemophilus parasuis SH0165]
          Length = 204

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 104/225 (46%), Gaps = 45/225 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF TLQGEG + G  ++F RF  CNL            C +CDT++         
Sbjct: 6   YRIVEIFETLQGEGFNTGMPSIFIRFGKCNL-----------ACPWCDTNY--------N 46

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           +Y    LAD+++   +      +  ++TGGEP +Q D+  L+  L   G+ IA+ETNG  
Sbjct: 47  QYETKTLADIMQ---VVKGFSAKNIIITGGEPTIQPDLTYLLDTLKAEGYFIAIETNGLK 103

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN----VSPENYIGF--------DFER 170
             P  ID+I  SPK     ++     LK   P  N    V   + + F          ER
Sbjct: 104 PVPPQIDYIATSPK-----RLYQKNYLKHHIPFANEVRIVVDGDVLAFCEQIESTIKAER 158

Query: 171 FSLQPMDG----PFLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210
           + L P +       LE  T L  ++     P+W+LS+QTHK  GI
Sbjct: 159 YYLSPCEENGVMNMLETITQLGKLNQRPNKPRWQLSIQTHKMAGI 203


>gi|126662368|ref|ZP_01733367.1| hypothetical protein FBBAL38_03415 [Flavobacteria bacterium BAL38]
 gi|126625747|gb|EAZ96436.1| hypothetical protein FBBAL38_03415 [Flavobacteria bacterium BAL38]
          Length = 210

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 96/216 (44%), Gaps = 27/216 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           ++  + E F T+QGEG H G  A F R  GC++            C +CD     ++ + 
Sbjct: 14  EMLPLMEEFYTIQGEGYHTGTAAYFIRIGGCDV-----------GCHWCD-----VKESW 57

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
               +     D+I       +K     V+TGGEPL      L   L ++   + +ET+G 
Sbjct: 58  NAELHPPTNTDIIVSN---AKKYADTVVVTGGEPLTWDMTLLTSKLKEQNLRVHIETSGA 114

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
            E     DW C+SPK    L ++   ++      +  +  ++I  + +   + P    FL
Sbjct: 115 YEVTGTWDWFCLSPKKN-KLPVQSAYDIANELKVIIYNKHDFIFAEEQAAKVNPNAILFL 173

Query: 182 -------EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                  EE T L + Y   NPKWR+S+QTHK++ I
Sbjct: 174 QPEWSKKEEMTPLIVDYVMNNPKWRVSLQTHKYLNI 209


>gi|159030634|emb|CAO88302.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 224

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 101/218 (46%), Gaps = 33/218 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y + E F ++QGEG   G  A F R  GC+++           C +CD      +     
Sbjct: 30  YPVVETFHSVQGEGFWTGSNAFFLRLGGCDVY-----------CPWCDQK----ESWNAH 74

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           RY    L +L+E   +  +      V+TGGEPL+    PL +    +G  + +ET+G   
Sbjct: 75  RYPQKSLGELVE---MAKDANPAMVVITGGEPLMHNLAPLTEEFKNQGLRVHLETSGA-H 130

Query: 124 PPQGI-DWICVSPKA--GCDLKIKGG-QELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           P  G+ DW+  SPK     D  I     ELK+V      +PE+      +   L      
Sbjct: 131 PFTGVFDWVTFSPKTYKMPDPSIYARVNELKIVV----ANPEDLDWAAMQESKLSEGVIK 186

Query: 180 FLE------ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +L+      E+  L  +Y  ++P+WRLS+QTHKF+G+R
Sbjct: 187 YLQPEWNTAESKELVFNYVLRHPQWRLSLQTHKFLGVR 224


>gi|295135621|ref|YP_003586297.1| radical SAM superfamily protein [Zunongwangia profunda SM-A87]
 gi|294983636|gb|ADF54101.1| radical SAM superfamily protein [Zunongwangia profunda SM-A87]
          Length = 223

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 103/221 (46%), Gaps = 39/221 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + E F T+QGEG H G  A F R  GC++            C +CD      +    
Sbjct: 28  MLPLMEEFYTIQGEGYHKGTAAYFIRIGGCDV-----------GCHWCDVK----ESWNA 72

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           G +    + +++E       K  +  V+TGGEPL      L  +L K+G +I +ET+G  
Sbjct: 73  GLHPPTHVGEIVE----NALKYSKTIVITGGEPLTWDMTTLTDSLKKQGCQIHIETSGAY 128

Query: 123 EPPQGI-DWICVSPKAGCDLKIKGGQ-ELKLVFPQVNVSPENYIGFDFER---------- 170
            P  GI DWIC+SPK     KIK  + E+  V  ++ V   N   F F            
Sbjct: 129 -PLTGIWDWICLSPK-----KIKLPEPEIYPVANELKVIIFNKHDFKFAEEQAAQVGEHC 182

Query: 171 -FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              LQP +    E+   L + Y  +NPKW++S+QTHK++ I
Sbjct: 183 ILYLQP-EWSNREKMIPLIVDYVMRNPKWKVSLQTHKYLNI 222


>gi|157803532|ref|YP_001492081.1| 50S ribosomal protein L35 [Rickettsia canadensis str. McKiel]
 gi|157784795|gb|ABV73296.1| 50S ribosomal protein L35 [Rickettsia canadensis str. McKiel]
          Length = 225

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 108/223 (48%), Gaps = 36/223 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           +K IF T+QGEG   G  A+F R  GCNL            C FCDT+F           
Sbjct: 20  VKSIFKTIQGEGIFVGSPAIFVRLGGCNLA-----------CHFCDTEFEDFD-----LV 63

Query: 66  NVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122
           ++ ++ + +E   +    EK     V+TGGEP+ Q    L Q L  R F++ +ETNGT+ 
Sbjct: 64  DITEILNKVESLALNSKNEKSVNLVVITGGEPMRQPIALLCQKLLDRDFKVQIETNGTLY 123

Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENYIGFDF------ERFSL- 173
              P  +  IC SPKAG     K  ++L      V  +  +N + + F        +++ 
Sbjct: 124 RSLPNEVSIIC-SPKAGQTGYSKIREDLLSQISAVKFIVAKNILEYSFIPEVGQTAYNIP 182

Query: 174 ---QPMD--GPFL-EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              QPMD   P L +EN  LA+    ++   +LS+QTHKF+GI
Sbjct: 183 VFVQPMDQNNPKLNDENNALAVKLALES-GSKLSLQTHKFLGI 224


>gi|88803479|ref|ZP_01119005.1| hypothetical protein PI23P_12842 [Polaribacter irgensii 23-P]
 gi|88781045|gb|EAR12224.1| hypothetical protein PI23P_12842 [Polaribacter irgensii 23-P]
          Length = 209

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 100/217 (46%), Gaps = 31/217 (14%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + E F T+QGEG H G  A F R  GC++            C +CD     ++ +  
Sbjct: 14  MLPLMEEFYTIQGEGCHTGTAAYFIRVGGCDV-----------GCHWCD-----VKESWN 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              +   LAD I E     +K     V+TGGEPL+     + ++L K   +  +ET+G  
Sbjct: 58  ADLHPPTLADTIVEN---VKKHANTVVITGGEPLMWSMDYITESLQKNSIKTHIETSGAY 114

Query: 123 EPPQGIDWICVSPKAG---CDLKIKGGQELKLVFPQVNVSPENYIGFDFER------FSL 173
                 DW C+SPK      D       ELK++    N S   +   + E+        L
Sbjct: 115 AFSGKWDWFCLSPKKTKMPLDECYPEADELKMIIH--NKSDFIFAEQEAEKVGQKCQLYL 172

Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           QP +    E+ T L ++Y  +NPKW++S+QTHKF+ I
Sbjct: 173 QP-EWSKKEKMTALIVAYVMKNPKWKISLQTHKFLNI 208


>gi|255033903|ref|YP_003084524.1| hypothetical protein Dfer_0088 [Dyadobacter fermentans DSM 18053]
 gi|254946659|gb|ACT91359.1| conserved hypothetical protein [Dyadobacter fermentans DSM 18053]
          Length = 193

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 98/218 (44%), Gaps = 42/218 (19%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           E F TLQGEG H+GR A F R  GC++            C +CD        +   ++++
Sbjct: 2   EAFYTLQGEGQHSGRAAYFIRLGGCDV-----------GCHWCDVK-ESWDASIHPKFDI 49

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQG 127
           + + D         +  GR  V+TGGEPL+     L  AL + GF+  +ET+G       
Sbjct: 50  NAIVDG------ALQYPGRLAVITGGEPLMYNLDALTGALQEAGFKTNIETSGVYPFTGH 103

Query: 128 IDWICVSPK----AGCDLKIKGGQELKLVF-----------PQVNVSPENYIGFDFERFS 172
            DW+C SPK       D+  K   ELK +                VSPE  +    E +S
Sbjct: 104 WDWVCFSPKKFKTPHPDI-YKNADELKTIIYNKSDFDFAEEHAAKVSPECTLLMQPE-WS 161

Query: 173 LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            Q +  P       L I Y   NPKW++S+QTHKF+ I
Sbjct: 162 KQDVMLP-------LIIDYIKDNPKWKMSLQTHKFMNI 192


>gi|319779040|ref|YP_004129953.1| Queuosine Biosynthesis QueE Radical SAM [Taylorella equigenitalis
           MCE9]
 gi|317109064|gb|ADU91810.1| Queuosine Biosynthesis QueE Radical SAM [Taylorella equigenitalis
           MCE9]
          Length = 222

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 107/232 (46%), Gaps = 53/232 (22%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + I EIF +LQGEG + G  A F R   CNL            C +CDT+          
Sbjct: 18  FRIVEIFKSLQGEGFNTGMPATFVRLGRCNL-----------ACGWCDTN---------- 56

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
            YN   L  L E   I  +      +LTGGEP +  +V L I+A   RG+ + +ETNG  
Sbjct: 57  -YNSFGLKSLSEILQIVEDLGQSNIILTGGEPSVHPNVELLIEAFKSRGYYLCIETNGIS 115

Query: 123 EPPQGIDWICVSPKAGC------DLKIKGGQELKLVFPQVNVSPENYIG--------FDF 168
           + P+GID+I +SPK  C       + ++   E+++V      + E+++         F+ 
Sbjct: 116 DVPEGIDYIAISPKY-CYKERYEKVGLRYADEIRIVVDFNETNREDFLNWLQDINEKFNS 174

Query: 169 ERFSLQPMDGPFLEENTNLAISYCFQ----------NPKWRLSVQTHKFIGI 210
           +++ L P     LE + ++ I    +           P+W LS+QTHK  GI
Sbjct: 175 KKYYLSP-----LEHDGSMNIQQTIKIIGELNGLKIGPRWELSLQTHKLAGI 221


>gi|261749286|ref|YP_003256971.1| hypothetical protein BPLAN_199 [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497378|gb|ACX83828.1| conserved hypothetical protein [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 204

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 102/215 (47%), Gaps = 27/215 (12%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + +KE F ++QGEG  +G  A F RF GCN+           QC +CDT     +  K  
Sbjct: 8   FPVKETFYSIQGEGFFSGIAAYFIRFEGCNI-----------QCDWCDTK-SSWKIEKKD 55

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
              V ++ + I E+        +  V+TGGEP++    PL   L K+G+ I VET+G+  
Sbjct: 56  FLTVHKIINNINEK-------VKTIVITGGEPMMWNLTPLTSLLKKKGYRIHVETSGSYP 108

Query: 124 -PPQGIDWICVSPKAG---CDLKIKGGQELKLVF-PQVNVSPENYIGFDFERFSLQPMDG 178
              + IDWI +SPK          K   ELK++   + + S      F  ++ +      
Sbjct: 109 IHEKDIDWITISPKKKKRPLKENYKKMNELKIIICNESDFSFAEEQAFYVKKSNCVLCLQ 168

Query: 179 PFLEENTNL---AISYCFQNPKWRLSVQTHKFIGI 210
           P  + N  +    ISY   +PKW++S+Q HK + I
Sbjct: 169 PEWKNNIKILPKIISYIKNHPKWKISLQIHKILNI 203


>gi|86132652|ref|ZP_01051245.1| radical SAM superfamily protein [Dokdonia donghaensis MED134]
 gi|85816894|gb|EAQ38079.1| radical SAM superfamily protein [Dokdonia donghaensis MED134]
          Length = 213

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 98/223 (43%), Gaps = 41/223 (18%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           ++  + E F T+QGEG H G  A F R  GC++            C +CD     ++ + 
Sbjct: 17  EMLPLMEEFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCD-----VKESW 60

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
               +    A+ I E      K     V+TGGEPL+    PL + L   G    +ET+G 
Sbjct: 61  DAAIHPPTNANTIAEN---AAKYSDTIVVTGGEPLMWDMNPLTKKLKSLGLTTHIETSGA 117

Query: 122 IEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVNVSPENYIGFDFER-------- 170
            E     DWIC+SPK     K   ++   ELK++         N   FDF          
Sbjct: 118 YELSGDWDWICLSPKKRMLPKASVLEKANELKVII-------FNKSDFDFAEKHATQVGE 170

Query: 171 ---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                LQP +    ++   L + Y  +NPKW++S+QTHK++ I
Sbjct: 171 DCILYLQP-EWSVRDKMVPLIVDYVMKNPKWKVSLQTHKYLNI 212


>gi|78780168|ref|YP_398280.1| putative organic radical activating protein [Prochlorococcus
           marinus str. MIT 9312]
 gi|78713667|gb|ABB50844.1| organic radical activating enzyme-like protein [Prochlorococcus
           marinus str. MIT 9312]
          Length = 225

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 104/230 (45%), Gaps = 41/230 (17%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           E F +LQGEG HAG+ A F R +GC +            C +CDT           +Y  
Sbjct: 11  EQFHSLQGEGYHAGKSAFFVRLAGCEV-----------GCSWCDTK----HSWDENKYPS 55

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGFEIAVETNG 120
             +  +I+   I  E+   +CV+TGGEPL        +A+ +          +I +ET+G
Sbjct: 56  VSIEKIIDRIKIAREQGASFCVITGGEPLQHNLDKFCKAIKQMKMGKEQNSMKIHIETSG 115

Query: 121 TIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQ-------VNVSPENYIGFDFER 170
                   DWI +SPK     K   +K   E+K++  +       + +  E    ++F +
Sbjct: 116 VNSISGSYDWITLSPKRHSPPKNYFLKNCNEIKIIINEKEDIEFAIQIKKEILKQYEFSK 175

Query: 171 F--SLQPMDGPFL-------EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
              SL+  D  F        ++  +LAI +   NP W+LS+QTHK++ I+
Sbjct: 176 IEDSLKKEDKIFYLQPAWNNKDGFSLAIDFVKNNPDWKLSLQTHKYLKIK 225


>gi|319945214|ref|ZP_08019476.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Lautropia mirabilis ATCC 51599]
 gi|319741784|gb|EFV94209.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Lautropia mirabilis ATCC 51599]
          Length = 244

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 104/222 (46%), Gaps = 39/222 (17%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF TLQGEG + G  +VF RF  CNL            C +CDTD+         
Sbjct: 46  YRIVEIFETLQGEGFNTGMPSVFIRFGKCNL-----------ACPWCDTDY--------N 86

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           R+    L D++ +         R  ++TGGEP +Q  +  L+ +L   G  +A+ETNG  
Sbjct: 87  RFGTMTLGDILAK---VRTFSARNVIITGGEPTIQPHLERLLDSLKAEGHFLAIETNGLK 143

Query: 123 EPPQGIDWICVSPK-----AGCDLKIKGGQELKLVFP----QVNVSPENYIGFDFERFSL 173
             P  ID+I  SPK     A     IK   E+++V            E+ I  D  R+ L
Sbjct: 144 PVPPQIDYIATSPKRLYQQAYQKRHIKFAHEVRIVVDGDVRDFCAQIEDSIQAD--RYYL 201

Query: 174 QP--MDG--PFLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210
            P  +DG    LE  T L  ++     P+W+LS+QTHK  GI
Sbjct: 202 SPCEVDGRMNMLETITQLGQLNQRPGRPRWQLSIQTHKLAGI 243


>gi|225011685|ref|ZP_03702123.1| Radical SAM domain protein [Flavobacteria bacterium MS024-2A]
 gi|225004188|gb|EEG42160.1| Radical SAM domain protein [Flavobacteria bacterium MS024-2A]
          Length = 210

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 94/212 (44%), Gaps = 27/212 (12%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F TLQGEG H G  A F R  GC++            C +CD      +      +
Sbjct: 18  LMEAFYTLQGEGYHKGSAAYFIRIGGCDV-----------GCHWCDVK----ESWNADLH 62

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
              Q+  ++ E     +K     V+TGGEPL+    PL  AL+K   +I +ET+G     
Sbjct: 63  PPTQIDSIVAE----AKKYSDTVVVTGGEPLMWKMDPLTDALHKEDMQIHIETSGAYSLS 118

Query: 126 QGIDWICVSPKAGCDLKIKG---GQELKLVF---PQVNVSPENYIGFDFE-RFSLQPMDG 178
              DW C+SPK      ++      ELK++         + E       E +  LQP + 
Sbjct: 119 GSWDWFCLSPKKNKLPIVEAYAVADELKMIVYNKDDFRFAEEQAAKVGQECKLFLQP-EW 177

Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              E    L + Y   NPKW++S+QTHK++ I
Sbjct: 178 SKRETVMPLLVDYVLGNPKWKVSLQTHKYLNI 209


>gi|166365320|ref|YP_001657593.1| hypothetical protein MAE_25790 [Microcystis aeruginosa NIES-843]
 gi|166087693|dbj|BAG02401.1| hypothetical protein MAE_25790 [Microcystis aeruginosa NIES-843]
          Length = 205

 Score = 88.6 bits (218), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 100/218 (45%), Gaps = 33/218 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y + E F ++QGEG   G  A F R  GC+++           C +CD      +     
Sbjct: 11  YPVVETFHSVQGEGFWTGSNAFFLRLGGCDVY-----------CPWCDQK----ESWNAH 55

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           RY    L +L+E   +         V+TGGEPL+    PL + L  +G  + +ET+G   
Sbjct: 56  RYPQQSLRELVE---MAKGANPAMVVITGGEPLMHNLDPLTKELKNQGLRVHLETSGA-H 111

Query: 124 PPQGI-DWICVSPKA--GCDLKIKGG-QELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           P  G+ DW+  SPK     D  I     ELK+V       PE+      +   L      
Sbjct: 112 PFTGVFDWVTFSPKTYKMPDPSIYARVNELKIVV----AHPEDLDWASMQESKLSEGVIK 167

Query: 180 FLE------ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +L+      E+  L  +Y  ++P+WRLS+QTHKF+G+R
Sbjct: 168 YLQPEWNTAESKELVFNYVLRHPQWRLSLQTHKFLGVR 205


>gi|150026231|ref|YP_001297057.1| hypothetical protein FP2200 [Flavobacterium psychrophilum JIP02/86]
 gi|149772772|emb|CAL44256.1| Protein of unknown function YgcF [Flavobacterium psychrophilum
           JIP02/86]
          Length = 210

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 93/216 (43%), Gaps = 27/216 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           ++  + E F T+QGEG H G  A F R  GC++            C +CD     ++ + 
Sbjct: 14  EMLPLMEEFYTIQGEGYHTGTAAYFIRIGGCDV-----------GCHWCD-----VKESW 57

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
               +     D+I E      K  +  V+TGGEPL      L Q L     ++ +ET+G 
Sbjct: 58  NAALHPPTKTDVIVEN---ATKYAKTIVVTGGEPLTWDMTVLTQRLKAENLQVHIETSGA 114

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
                  DW C+SPK    L +    E+      +  +  ++I  + +   +      FL
Sbjct: 115 YPVTGAWDWFCLSPKKN-KLPVAEAYEIAHELKVIIYNKHDFIFAEEQAAKVNKNAILFL 173

Query: 182 -------EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                  EE T   + Y   NPKWR+S+QTHK++ I
Sbjct: 174 QSEWSKKEEMTPFIVDYVMNNPKWRVSLQTHKYLNI 209


>gi|67924094|ref|ZP_00517541.1| Radical SAM [Crocosphaera watsonii WH 8501]
 gi|67854055|gb|EAM49367.1| Radical SAM [Crocosphaera watsonii WH 8501]
          Length = 213

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 97/222 (43%), Gaps = 41/222 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I E F +LQGEG   G  A F R +GC++            C +CD      +     
Sbjct: 19  YPIVETFHSLQGEGTWTGVNAFFIRLAGCDV-----------HCPWCDQK----ESWTSK 63

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           +Y    +  L E   ++        V+TGGEPL+    PL +AL K G  + +ET+G+  
Sbjct: 64  KYPQQSIKILAE---VSKMANPFMVVITGGEPLMYDLFPLTKALKKLGLRVHLETSGSHS 120

Query: 124 PPQGIDWICVSPKA-------------GCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
                DW+  SPK                 + I   ++L     +    P   I +    
Sbjct: 121 FTGQFDWVTFSPKPFKLPHESIYSQVNELKIVIANQEDLHWAEEEAKKVPREAIKY---- 176

Query: 171 FSLQP-MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             LQP  + P   E+ +L   Y  ++P+WR+S+QTHKF+G+R
Sbjct: 177 --LQPEWNTP---ESQSLIFDYILKHPQWRMSLQTHKFLGVR 213


>gi|261867762|ref|YP_003255684.1| NrdG protein [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413094|gb|ACX82465.1| NrdG protein [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 209

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 108/229 (47%), Gaps = 47/229 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y+I EIF +LQGEG + G   +F RF  CNL            C +CDT++      
Sbjct: 8   MPSYNIVEIFESLQGEGFNTGMPCIFVRFGKCNL-----------ACPWCDTNY------ 50

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
              ++    LA ++EE      K     ++TGGEP +  ++  L++ +   G+ +A+ETN
Sbjct: 51  --NQFERMTLAQVMEEVRSFSSKN---IIITGGEPTIVPNIEILLEQMKSEGYFLAIETN 105

Query: 120 GTIEPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF-------- 166
           G    P  ID+I  SPK     K     I    E+++      V+ EN + F        
Sbjct: 106 GLKPIPPQIDYIATSPKRLYPHKYERRCIDFAHEVRI------VADENVMAFCELIEDKI 159

Query: 167 DFERFSLQP--MDGP--FLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210
             ER+ L P  ++G    LE  T L  ++     PKW LSVQTHK IGI
Sbjct: 160 RAERYYLSPCEINGKMNLLETITQLGQLNQRVNRPKWLLSVQTHKLIGI 208


>gi|332170651|gb|AEE19906.1| Radical SAM domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 213

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 97/223 (43%), Gaps = 41/223 (18%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           ++  + E F T+QGEG H G  A F R  GC++            C +CD     ++ + 
Sbjct: 17  EMLPLMEEFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCD-----VKESW 60

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
               +    A+ I E      K     V+TGGEPL+    PL   L   G    +ET+G 
Sbjct: 61  DAAIHPPTNANTIAEN---AAKYSDTIVVTGGEPLMWDMNPLTHKLKSLGLTTHIETSGA 117

Query: 122 IEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVNVSPENYIGFDFER-------- 170
            E     DWIC+SPK     K   ++   ELK++         N   FDF          
Sbjct: 118 YELSGEWDWICLSPKKRMLPKASVLEKANELKVII-------FNKSDFDFAEKHAAQVGE 170

Query: 171 ---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                LQP +    ++   L + Y  +NPKW++S+QTHK++ I
Sbjct: 171 DCILYLQP-EWSVRDKMVPLIVDYVMKNPKWKVSLQTHKYLNI 212


>gi|312129858|ref|YP_003997198.1| radical sam domain protein [Leadbetterella byssophila DSM 17132]
 gi|311906404|gb|ADQ16845.1| Radical SAM domain protein [Leadbetterella byssophila DSM 17132]
          Length = 202

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 95/218 (43%), Gaps = 38/218 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F TLQGEG H+G+ A F R  GC++            C +CD             +
Sbjct: 9   VMESFYTLQGEGFHSGKAAYFIRLGGCDV-----------GCVWCDVK---------ESW 48

Query: 66  NVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           + +       E  + G  E  GR  V+TGGEPL+     L   L ++GF+  +ET+G   
Sbjct: 49  DAEAHPQFRVEDIVNGALEYPGRLAVITGGEPLMYDLNELTAELKQKGFQTNIETSGAHP 108

Query: 124 PPQGIDWICVSPKAGCDLKIKGG-QELKLVFPQVNVSPENYIGFDFERF---SLQPMDGP 179
                DWIC SPK     K K   +E   V  ++ V   N   FDF       + P    
Sbjct: 109 LSGDWDWICFSPK-----KFKAPLEEFYAVANELKVIVYNSSDFDFAEIHAAKVNPDCKL 163

Query: 180 FL-------EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           FL       E      + Y   NP+WR+S+QTHK++ I
Sbjct: 164 FLQVEWDRRERMMPSIVEYVKANPQWRVSIQTHKYMNI 201


>gi|260061953|ref|YP_003195033.1| hypothetical protein RB2501_10187 [Robiginitalea biformata
           HTCC2501]
 gi|88783515|gb|EAR14686.1| hypothetical protein RB2501_10187 [Robiginitalea biformata
           HTCC2501]
          Length = 210

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 94/220 (42%), Gaps = 37/220 (16%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + E F T+QGEG H G  A F R  GC++            C +CD     ++ +  
Sbjct: 15  MLPLMEAFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCD-----VKESWN 58

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              +     D I              V+TGGEPL+    PL   L  RG +I +ET+G  
Sbjct: 59  ADLHPPTAVDTIVRD---AAAASDTIVVTGGEPLMWDMAPLTSRLKSRGMKIHIETSGAY 115

Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER--------- 170
                 DWIC+SP   KA      +   ELK++     V   + + F  E          
Sbjct: 116 PLTGTWDWICLSPKKNKAPVGDIHQRAHELKVI-----VYNRHDLKFAEEHAELTSPDCL 170

Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             LQP +    E  T L + Y   NP+WR+S+QTHK++ I
Sbjct: 171 LYLQP-EWSVRERVTPLIVEYVMANPRWRVSLQTHKYLNI 209


>gi|293390438|ref|ZP_06634772.1| NrdG protein [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950972|gb|EFE01091.1| NrdG protein [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 224

 Score = 87.8 bits (216), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 108/229 (47%), Gaps = 47/229 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y+I EIF +LQGEG + G   +F RF  CNL            C +CDT++      
Sbjct: 23  MPSYNIVEIFESLQGEGFNTGMPCIFVRFGKCNL-----------TCPWCDTNY------ 65

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
              ++    LA ++EE         +  ++TGGEP +  ++  L++ +   G+ +A+ETN
Sbjct: 66  --NQFERMTLAQVMEE---VRSFSSKNIIITGGEPTIVPNIEILLEQMKSEGYFLAIETN 120

Query: 120 GTIEPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF-------- 166
           G    P  ID+I  SPK     K     I    E+++      V+ EN + F        
Sbjct: 121 GLKPIPPQIDYIATSPKRLYPNKYERRCIDFAHEVRI------VADENVMAFCELIEDKI 174

Query: 167 DFERFSLQP--MDGP--FLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210
             ER+ L P  ++G    LE  T L  ++     PKW LSVQTHK IGI
Sbjct: 175 RAERYYLSPCEINGKMNLLETITQLGQLNQRVNRPKWLLSVQTHKLIGI 223


>gi|86133041|ref|ZP_01051623.1| radical SAM superfamily protein [Polaribacter sp. MED152]
 gi|85819904|gb|EAQ41051.1| radical SAM superfamily protein [Polaribacter sp. MED152]
          Length = 210

 Score = 87.8 bits (216), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 97/222 (43%), Gaps = 41/222 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + E F T+QGEG H G  A F R  GC++            C +CD     ++ +  
Sbjct: 15  MLPLMEEFYTIQGEGSHTGTAAYFIRVGGCDV-----------GCHWCD-----VKESWN 58

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              +   +AD I E     +K     V+TGGEPL+     + + L K   +  +ET+G  
Sbjct: 59  ADLHPPTMADSIIEN---VKKYTDTVVITGGEPLMWSMDYITELLQKNNIKTHIETSGAY 115

Query: 123 EPPQGIDWICVSPKAG---CDLKIKGGQELKLVFPQVNVSPENYIGFDFE---------- 169
                 DW C+SPK          +   ELK++         N   FDF           
Sbjct: 116 SFSGKWDWFCLSPKKTKLPLTENYREADELKMII-------HNKSDFDFAEEQATKVGKK 168

Query: 170 -RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +  LQP +    E+ T L + Y  +NPKW++S+QTHK++ I
Sbjct: 169 CQLFLQP-EWSKKEKMTELIVDYVMKNPKWKVSLQTHKYLNI 209


>gi|86141192|ref|ZP_01059738.1| hypothetical protein MED217_04222 [Leeuwenhoekiella blandensis
           MED217]
 gi|85831751|gb|EAQ50206.1| hypothetical protein MED217_04222 [Leeuwenhoekiella blandensis
           MED217]
          Length = 213

 Score = 87.8 bits (216), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 97/223 (43%), Gaps = 41/223 (18%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +L  + E F T+QGEG H G  A F R  GC++            C +CD      +   
Sbjct: 17  ELLPLMEEFYTIQGEGYHTGTPAYFIRVGGCDV-----------GCHWCDVK----ESWD 61

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
              +   + A ++       +K  +  V+TGGEPL+     L   L   G ++ +ET+G 
Sbjct: 62  AAIHPPTEAAAIVA----NAKKYSKTIVITGGEPLMWDMNHLTSMLKAEGLQVHIETSGA 117

Query: 122 IEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVNVSPENYIGFDFE--------- 169
            E     DWIC+SPK     K    +   ELK++         N   F F          
Sbjct: 118 YELSGHWDWICLSPKKRMLPKPRIYEEAHELKVII-------YNKSDFAFAEEHAAKVNG 170

Query: 170 --RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             +  LQP +    E+ T L + Y   NPKW++S+QTHK++ I
Sbjct: 171 NCQLFLQP-EWSVREKMTPLIVDYVMANPKWKVSLQTHKYLNI 212


>gi|284929204|ref|YP_003421726.1| organic radical activating enzyme [cyanobacterium UCYN-A]
 gi|284809648|gb|ADB95345.1| organic radical activating enzyme [cyanobacterium UCYN-A]
          Length = 208

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 98/222 (44%), Gaps = 35/222 (15%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +  Y I E F ++QGEG   G  A F R +GCN+            C +CD        T
Sbjct: 11  LTTYPIAETFHSIQGEGAWTGVSAFFIRLAGCNV-----------GCPWCDQKESWTDKT 59

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
              +Y+ + L+   ++            V+TGGEPL+    PL   L K G +I +ET+G
Sbjct: 60  -FPKYSSEMLSTKAQQA------NASIVVITGGEPLMYNLFPLTDKLRKLGMKIHLETSG 112

Query: 121 TIEPPQGIDWICVSPK-----------AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
           +       +W+  SPK              +LKI    +    + +   S  N    +F 
Sbjct: 113 SYPFSGNFNWVTFSPKPFKAPHESIYVKASELKIIIADQKDFEWAEKQKSKTNSQSINF- 171

Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
              LQP        +++L   Y  ++P+WR+S+QTHKF+G+R
Sbjct: 172 ---LQPEWNS--RTSSSLIYKYICKHPEWRMSLQTHKFLGVR 208


>gi|91215960|ref|ZP_01252929.1| hypothetical protein P700755_15536 [Psychroflexus torquis ATCC
           700755]
 gi|91185937|gb|EAS72311.1| hypothetical protein P700755_15536 [Psychroflexus torquis ATCC
           700755]
          Length = 210

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 98/219 (44%), Gaps = 35/219 (15%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + E F T+QGEG H G  A F R  GC++            C +CD      +    
Sbjct: 15  MLPLMEEFYTIQGEGYHTGTAAYFIRIGGCDV-----------GCHWCDVK----ESWDP 59

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
            R+   ++  +IE      +K     V+TGGEPL      L Q L      I +ET+G  
Sbjct: 60  ERHPPTRIGSIIE----NAKKYSNTIVITGGEPLTWDMSMLTQGLKDNQLSIHIETSGAY 115

Query: 123 EPPQGIDWICVSPKAGC-----------DLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
           +     DWIC+SPK              +LK+    +    F + + S    +G D E F
Sbjct: 116 DLTGVWDWICLSPKKNKLPKPEIYPKVDELKVIIFNKHDFKFAEEHAS---QVGEDCELF 172

Query: 172 SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            LQP +    E+ T   + Y  ++PKWR+S+QTHK++ I
Sbjct: 173 -LQP-EWSVREKMTPQIVEYVMKHPKWRISLQTHKYLNI 209


>gi|229497033|ref|ZP_04390738.1| NrdG protein [Porphyromonas endodontalis ATCC 35406]
 gi|229316135|gb|EEN82063.1| NrdG protein [Porphyromonas endodontalis ATCC 35406]
          Length = 212

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 94/217 (43%), Gaps = 33/217 (15%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF +LQGEG   G   VF R S CNL           +C +CDTDF          +
Sbjct: 18  VNEIFYSLQGEGAQVGLPMVFIRLSSCNL-----------RCSYCDTDF--------SSF 58

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
               L  ++ E            + TGGEP L +   ++   +++G+  ++ETNGT   P
Sbjct: 59  TPMSLEAIVAE---LASFPTHNILWTGGEPTLHLTEEVVGFFHQKGYRQSIETNGTRPVP 115

Query: 126 QGIDWICVSPKAGCDLKI-----KGGQELKLVFPQVNVSPENYIGFDFER-FSLQPMDGP 179
           +GID+I  S K      +      G  E +  F      P         R + L P+  P
Sbjct: 116 RGIDYITCSAKPESFPHLWENFPHGVDEWRFPFGASAPLPPAIESLPPARTYCLSPIYEP 175

Query: 180 ---FLEENTNL--AISYCFQNPKWRLSVQTHKFIGIR 211
               L+    L   I Y  Q+P WRLS+Q HK IGI+
Sbjct: 176 GEAILQPPHALEECIEYIKQHPTWRLSIQLHKIIGIQ 212


>gi|110638115|ref|YP_678324.1| organic radical activating enzyme [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280796|gb|ABG58982.1| conserved hypothetical protein; possible organic radical activating
           enzyme [Cytophaga hutchinsonii ATCC 33406]
          Length = 205

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 97/212 (45%), Gaps = 26/212 (12%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F T+QGEG + GR A F R +GC++            C +CD      +     ++
Sbjct: 12  VMESFYTIQGEGHYQGRAAYFIRLAGCDV-----------GCHWCDVK----ESWDASQH 56

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
            +  +  ++ E        GR  V+TGGEPL+     L   L + GF   +ET+G     
Sbjct: 57  PMQTIEHMVAE---ASAFTGRIAVITGGEPLMHDLTNLTAQLKQEGFRNHIETSGAHPLS 113

Query: 126 QGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVSPENYIGFDFE---RFSLQPMDG 178
              DWIC+SP   KA     I+   ELK +VF   ++          +   +  LQP + 
Sbjct: 114 GEWDWICLSPKKFKAPLPSVIEACDELKIIVFHSSDIEWAKTFLPKLKKGCKLFLQP-EW 172

Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              EE     IS+  +NP+W +S+Q HKF+ I
Sbjct: 173 SRQEEMLPQIISFVKENPEWEISLQIHKFMNI 204


>gi|157962169|ref|YP_001502203.1| radical SAM domain-containing protein [Shewanella pealeana ATCC
           700345]
 gi|157847169|gb|ABV87668.1| Radical SAM domain protein [Shewanella pealeana ATCC 700345]
          Length = 222

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 106/238 (44%), Gaps = 50/238 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQD-RLSAQCRFCDTDFVGIQG 59
           Y + E+F T+QGEG H G  A+F R  GC +   W   +Q   L    R      + + G
Sbjct: 3   YPVNEVFETIQGEGTHTGVPAIFVRLQGCPVGCSWCDTKQTWELLEDNRVAPDLVIQVDG 62

Query: 60  TKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           T G      V+QL    E++  T     +  V+TGGEP L     L Q L+ +G++  +E
Sbjct: 63  TVGRWSELTVEQLVSAFEDKGFT----AKLVVITGGEPCLYDLSELTQYLHAQGYQTQIE 118

Query: 118 TNGTIEPPQGID-WICVSPKAGCDLKIKGG------------------------QELKLV 152
           T+GT +     D W+ VSPK    + +KGG                         EL L+
Sbjct: 119 TSGTFDVLCHPDTWVTVSPK----VNMKGGYAVLAQALNRANEIKHPVATQKHIDELDLL 174

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              +N++ +           LQP+    +   T LA+  C +   WRLSVQTHK++ I
Sbjct: 175 LEDINLTGKT--------VCLQPISQ--IPRATELAMKTCIER-NWRLSVQTHKYLNI 221


>gi|157375186|ref|YP_001473786.1| radical activating enzyme [Shewanella sediminis HAW-EB3]
 gi|157317560|gb|ABV36658.1| radical activating enzyme [Shewanella sediminis HAW-EB3]
          Length = 222

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 109/234 (46%), Gaps = 42/234 (17%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y + E+F T+QGEG   G  A+F R  GC          + W   E++R++ +       
Sbjct: 3   YPVNEVFETIQGEGFFTGVPAIFVRLQGCPVGCSWCDTKHTWDVIEENRVAPEL------ 56

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKE----GRYCVLTGGEPLLQVDVPLIQALNK 109
            + + GT G      + A+L  E+ I+  K      ++ V+TGGEP L   +PL ++LN 
Sbjct: 57  VIQVDGTIG------RWAELTAEELISNFKAKGFTAKHVVITGGEPCLHDLIPLTESLNL 110

Query: 110 RGFEIAVETNGTIEPP-QGIDWICVSP----KAGCDL----KIKGGQELKLVFPQVNVSP 160
            G+   +ET+GT E       W+ VSP    KAG  +     I+  +    V  Q ++  
Sbjct: 111 SGYATQIETSGTFEVICSDKTWVTVSPKINMKAGLPILNQALIRANEIKHPVATQAHIDD 170

Query: 161 ENY----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +     I  D +   LQP+        T LA+  C +   WRLS+QTHK++ I
Sbjct: 171 LDCLLKGISLDEKTICLQPISQK--SRATELAMRVCIER-NWRLSIQTHKYLEI 221


>gi|172035924|ref|YP_001802425.1| hypothetical protein cce_1008 [Cyanothece sp. ATCC 51142]
 gi|171697378|gb|ACB50359.1| hypothetical protein cce_1008 [Cyanothece sp. ATCC 51142]
          Length = 213

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 98/220 (44%), Gaps = 37/220 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG   G  A F R +GC++            C +CD      +     
Sbjct: 19  YPIVEIFHSLQGEGTWTGMSAFFIRLAGCDV-----------HCPWCDQK----ESWTSK 63

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
            Y    +  L E             V+TGGEPL+    PL +AL K G  + +ET+G   
Sbjct: 64  IYPQQSIKTLAEA---AKAANPAMVVITGGEPLMYDLFPLTKALKKLGLRVHLETSGAYP 120

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN------VSPENYIGFDFERFSLQPMD 177
                DW+ +SPK     K+        ++PQVN       + E++   + +   + P  
Sbjct: 121 FSGQFDWVTLSPKP---FKVPHES----IYPQVNELKVVITNQEDFHWAEEQEKKVPPQA 173

Query: 178 GPFLE------ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             +L+      E+ +L   Y  + P+WR+S+Q HKF+G+R
Sbjct: 174 LKYLQPEWNYPESQSLIFDYIRKAPQWRMSLQIHKFLGVR 213


>gi|16330304|ref|NP_441032.1| hypothetical protein sll2011 [Synechocystis sp. PCC 6803]
 gi|1652793|dbj|BAA17712.1| sll2011 [Synechocystis sp. PCC 6803]
          Length = 208

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 37/220 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I E F +LQGEG  AG  A F R  GC++            C +CD      + T   
Sbjct: 14  YPIAETFHSLQGEGAWAGGNAFFIRLGGCDV-----------HCPWCDQ-----KETWPT 57

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           +++  Q    + +Q +T +    + V+TGGEPL+    PL + L  +G  + +ET+G   
Sbjct: 58  QHHPRQTVTELVQQAVTAKPS--FVVITGGEPLMHDLQPLCKTLKNQGLRLHLETSGAYP 115

Query: 124 PPQGIDWICVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177
                DWI +SPK     K+          ELK++  Q     E++   + E   + P  
Sbjct: 116 LTGQFDWITLSPKP---YKLPQAAIYPLANELKVIISQ----DEDFDWAEMEARKISPGT 168

Query: 178 GPFLE-----ENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211
             +L+     E  N  I +Y   + +WRLS+QTHK++G+R
Sbjct: 169 PLYLQAEWETEAMNEKIFAYILTHSQWRLSLQTHKYLGVR 208


>gi|152979671|ref|YP_001345300.1| radical SAM domain-containing protein [Actinobacillus succinogenes
           130Z]
 gi|150841394|gb|ABR75365.1| Radical SAM domain protein [Actinobacillus succinogenes 130Z]
          Length = 208

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 102/223 (45%), Gaps = 41/223 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  A+F RF  CNL            C +CDT +         
Sbjct: 10  YPIVEIFESLQGEGANTGMPAIFIRFGKCNL-----------ACPWCDTPY--------- 49

Query: 64  RYNVDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
               ++ A L   Q I   +    +  ++TGGEP +Q  +  L++ L + G+ +A+ETNG
Sbjct: 50  ----NEFAALTFSQIIQKVRSFSAKNIIITGGEPTIQPRLSLLLEQLKQEGYFLAIETNG 105

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF--------DFERFS 172
               P  ID+I VSPK G   +    + +        V+ EN + F            + 
Sbjct: 106 LKTVPSQIDYIAVSPK-GLYWEKYHSRCISFAHEVRIVADENVLKFCAFIEDKIKANHYY 164

Query: 173 LQP--MDGPF-LEENTNL--AISYCFQNPKWRLSVQTHKFIGI 210
           L P   DG   L E   L   ++     PKW+LS+QTHK IGI
Sbjct: 165 LSPCETDGKMNLYETVTLLGQLNQRANRPKWQLSLQTHKLIGI 207


>gi|146298250|ref|YP_001192841.1| radical SAM domain-containing protein [Flavobacterium johnsoniae
           UW101]
 gi|146152668|gb|ABQ03522.1| Radical SAM domain protein [Flavobacterium johnsoniae UW101]
          Length = 210

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 95/221 (42%), Gaps = 39/221 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + E F T+QGEG H G  A F R  GC++            C +CD     ++ +  
Sbjct: 15  MLPLMEEFYTIQGEGFHTGTAAYFIRIGGCDV-----------GCHWCD-----VKESWN 58

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              +     D+I              V+TGGEPL      L Q L  +  ++ +ET+G  
Sbjct: 59  AELHPPTNIDIIVNN---ASSYANTVVVTGGEPLTWDMTLLTQQLKDKNLKVHIETSGAY 115

Query: 123 EPPQGIDWICVSPKA-----------GCDLKIKGGQELKLVFP--QVNVSPENYIGFDFE 169
                 DWIC+SPK              +LK+    +   +F   Q  +  +N I F   
Sbjct: 116 PLSGTWDWICLSPKKNKLPTPDVYANAHELKVIIYNKHDFIFAEEQAELVNDNAILF--- 172

Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              LQP +    EE T L + Y   NPKWR+S+QTHK++ I
Sbjct: 173 ---LQP-EWSKKEEMTPLIVDYVMNNPKWRVSLQTHKYLNI 209


>gi|15602049|ref|NP_245121.1| hypothetical protein PM0184 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720404|gb|AAK02268.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 209

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 104/226 (46%), Gaps = 47/226 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y+I EIF +LQGEG + G  ++F RF  CNL            C +CDT +         
Sbjct: 11  YAIVEIFESLQGEGFNTGMPSIFVRFGKCNL-----------ACPWCDTPY--------N 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           +Y    L+ ++++         +  ++TGGEP +   +  L+ AL   G+ +A+ETNG  
Sbjct: 52  QYTTWTLSKIVQK---VRSFSAKNIIITGGEPTIVPKIGVLLDALKAEGYFLAIETNGLK 108

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--------DFE 169
             P  ID+I  SPK     K     I    E+++      V+ EN I F          +
Sbjct: 109 SIPNQIDYIATSPKRLYQHKYQQKCIPFAHEVRI------VADENVIAFCEQIEQQIRAD 162

Query: 170 RFSLQPM----DGPFLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210
            + L P     +   LE  T +  ++     PKW+LS+QTHK IGI
Sbjct: 163 HYYLSPCEVNGEMNLLETITQIGRLNQRVNKPKWQLSIQTHKLIGI 208


>gi|159904363|ref|YP_001551707.1| putative organic radical activating protein [Prochlorococcus
           marinus str. MIT 9211]
 gi|159889539|gb|ABX09753.1| possible organic radical activating enzyme [Prochlorococcus marinus
           str. MIT 9211]
          Length = 226

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 100/236 (42%), Gaps = 48/236 (20%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F ++QGEG HAGR A F R + CN+            C +CDT     +      +
Sbjct: 7   VVESFHSIQGEGAHAGRSAFFIRLAQCNV-----------GCEWCDTK----ESWSSISH 51

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGFEIAVET 118
               +  L++E  I   K   + V+TGGEPL     PL  A+             I +ET
Sbjct: 52  PKKTIDSLVQETTIAKSKGASFLVITGGEPLHHNLNPLCNAIKNNINSCGDNAIPIHLET 111

Query: 119 NGTIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFP--------------QVNVSPE 161
           +G        DWI +SPK     K   ++  QE+K++                 ++    
Sbjct: 112 SGVHHMSGAPDWITLSPKRHFPPKEELLEACQEIKVIIHSKEDILFAEEMAHRSIHAKKN 171

Query: 162 NYIGFDFERFS-------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            Y      + S       LQP  G  + +   LAI Y  +NP+WRLS+QTHK++ I
Sbjct: 172 AYKSRVSTKQSLIKPLLFLQPGWGHSMGQ--KLAIEYVIKNPQWRLSLQTHKWLAI 225


>gi|88859840|ref|ZP_01134479.1| queC protein [Pseudoalteromonas tunicata D2]
 gi|88817834|gb|EAR27650.1| queC protein [Pseudoalteromonas tunicata D2]
          Length = 221

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 112/234 (47%), Gaps = 40/234 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59
           +Y I EIF T+QGE    G  ++F R  GC +   W   +Q   ++     DT  V +Q 
Sbjct: 1   MYKINEIFETIQGEASFTGMPSIFVRLQGCPVGCAWCDTKQTWETS-----DTYKVDLQK 55

Query: 60  TKGGRYNVDQLADLIEEQ----WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
           T   + + +  AD+   Q    ++    + ++ V+TGGEP +   VPL + L+  G+   
Sbjct: 56  TVEKKADSELWADVTVAQLLALFVEKGYQAKHIVITGGEPCMYDLVPLCEGLHAAGYGTQ 115

Query: 116 VETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENYI-- 164
           VET+GT E   P +   W+ VSPK    + ++GG   LK    + N     ++ + ++  
Sbjct: 116 VETSGTFEIKVPAE--TWVTVSPK----INMRGGYAVLKSAMQRANEIKHPIAMQRHVDE 169

Query: 165 --------GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                   G   +   LQP+      + T LAI  C +   WRLSVQ HK++GI
Sbjct: 170 LEQLMAECGVTPKLIYLQPISQK--AKATQLAIEVC-KAKNWRLSVQVHKYLGI 220


>gi|328950182|ref|YP_004367517.1| Radical SAM domain protein [Marinithermus hydrothermalis DSM 14884]
 gi|328450506|gb|AEB11407.1| Radical SAM domain protein [Marinithermus hydrothermalis DSM 14884]
          Length = 199

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 97/222 (43%), Gaps = 37/222 (16%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           K Y + E F ++QGEG   G  A F R +GC++            C FCDT         
Sbjct: 3   KGYPVVETFHSVQGEGHWTGTSAFFIRLAGCDV-----------GCWFCDTKESWDMSQH 51

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
             R +VD L  + E Q           V+TGGEPL+    PL +AL   G    +ET+G 
Sbjct: 52  PWR-SVDAL--VAEAQ----AASPAIVVVTGGEPLMHDLTPLSRALRAAGLRAHLETSGA 104

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN------VSPENYIGFDFERFSLQP 175
                  DW+ +SPK       K       V+P V+      V+  +    +     + P
Sbjct: 105 HPFSGAWDWVTLSPK-------KFRPPHPSVYPHVHELKVVVVNQSDLAWAETHAARVPP 157

Query: 176 MDGPFL------EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               +L      E++  L + Y  Q+P+WR+S+QTHK +G+R
Sbjct: 158 TALKYLQPEWSTEKSRQLILEYVLQHPEWRVSLQTHKVLGVR 199


>gi|114047413|ref|YP_737963.1| radical activating enzyme [Shewanella sp. MR-7]
 gi|113888855|gb|ABI42906.1| radical activating enzyme [Shewanella sp. MR-7]
          Length = 222

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 105/228 (46%), Gaps = 30/228 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQD-RLSAQCRFCDTDFVGIQG 59
           Y + E+F T+QGEG   G  A+F R  GC +   W   +Q   L  + +      + + G
Sbjct: 3   YPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDLLEENKVSPEQVITVDG 62

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           + G R+       LIE     G    R+ V+TGGEP +     L  AL+  GF   +ET+
Sbjct: 63  SVG-RWANHTAQSLIEAFNAKGYT-ARHVVITGGEPCMYDLNELTHALHAAGFATQIETS 120

Query: 120 GTIEPPQGID-WICVSPKAGCDLKIKGG-QELKLVFPQVN-----VSPENYI-------- 164
           GT E     D W+ VSPK    + +KGG Q L     + N     ++ EN+I        
Sbjct: 121 GTFEVKCDADTWVTVSPK----INMKGGYQVLAQALIRANEIKHPIATENHIDELDELLK 176

Query: 165 GFDF--ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           G D   +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 177 GIDVSAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221


>gi|126657071|ref|ZP_01728242.1| hypothetical protein CY0110_28234 [Cyanothece sp. CCY0110]
 gi|126621614|gb|EAZ92324.1| hypothetical protein CY0110_28234 [Cyanothece sp. CCY0110]
          Length = 213

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 95/225 (42%), Gaps = 41/225 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +K Y I E F +LQGEG   G  A F R +GC++            C +CD      +  
Sbjct: 16  LKTYPIVERFHSLQGEGTWTGMSAFFIRLAGCDV-----------HCPWCDQK----ESW 60

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
               Y    +  L +             V+TGGEPL+    PL + L + G  + +ET+G
Sbjct: 61  NSNLYPQQSIKTLTDA---AKAANPAMVVITGGEPLIHDLFPLTKGLKQLGLRVHLETSG 117

Query: 121 TIEPPQGIDWICVSPKA-----------GCDLKIKGGQELKLVFP--QVNVSPENYIGFD 167
                   DWI +SPK              +LK+    E  L +   Q    P   I + 
Sbjct: 118 AYPLTGEFDWITLSPKPFKVPHETVYSQVNELKVIIANEADLNWAEKQEKKVPSQTIKY- 176

Query: 168 FERFSLQP-MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                LQP  + P   E+ +L   Y   NP+WR+S+Q HKF+G+R
Sbjct: 177 -----LQPEWNSP---ESKSLIFDYILSNPQWRMSLQIHKFLGVR 213


>gi|116074183|ref|ZP_01471445.1| possible organic radical activating enzyme [Synechococcus sp.
           RS9916]
 gi|116069488|gb|EAU75240.1| possible organic radical activating enzyme [Synechococcus sp.
           RS9916]
          Length = 202

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 32/217 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F +LQGEG HAGR A F R +GCN+            C +CDT     Q +    +
Sbjct: 7   VVETFHSLQGEGLHAGRSAFFIRLAGCNV-----------GCSWCDTKHSWPQSS----H 51

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTIEP 124
            +  +  L  E    G+    + V+TGGEPL      L  A+       I +ET+G ++P
Sbjct: 52  PLQSVDSLAAEAAAAGQAGAAFVVITGGEPLHHNLDGLTGAIRTACTLPIHIETSG-VDP 110

Query: 125 PQGI-DWICVSPKAGCDLK---IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
             G  DWI +SPK     +   ++   ELK+V     V   N + F     S  P     
Sbjct: 111 LSGTPDWITLSPKRHSPPRAEVLRACHELKVV-----VHEPNDLLFAEVAASQAPQASWL 165

Query: 181 L------EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           L      E+   LAI+Y   +P+WRLS+Q+HK++ +R
Sbjct: 166 LQPGWQSEKGQQLAINYAQHHPRWRLSLQSHKWLQVR 202


>gi|120437087|ref|YP_862773.1| hypothetical protein GFO_2752 [Gramella forsetii KT0803]
 gi|117579237|emb|CAL67706.1| conserved hypothetical protein [Gramella forsetii KT0803]
          Length = 210

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 103/222 (46%), Gaps = 41/222 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + E F T+QGEG H G  A F R  GC++            C +CD      +    
Sbjct: 15  MLPLMEEFYTIQGEGFHKGTAAYFIRIGGCDV-----------GCHWCDVK----ESWDA 59

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +   ++  ++E       K  +  V+TGGEPL      L  +L K+G +I +ET+G  
Sbjct: 60  EVHPPTRIGQIVE----NAVKYSKTIVITGGEPLTWDMTELTGSLKKKGCDIHIETSGAY 115

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----VSPENYIGFDFERFS----- 172
           +     DWIC+SPK     KIK  ++   ++P  N     V  ++ + F  E+ +     
Sbjct: 116 DLTGTWDWICLSPK-----KIKLPKD--KIYPVANELKVIVFNKHDLKFAEEQAAKVGEK 168

Query: 173 ----LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               LQP +    EE   L + Y   NPKW++S+QTHK++ I
Sbjct: 169 CVLYLQP-EWSKREEMIPLIVDYVMANPKWKVSLQTHKYLNI 209


>gi|289581999|ref|YP_003480465.1| radical SAM protein [Natrialba magadii ATCC 43099]
 gi|289531552|gb|ADD05903.1| Radical SAM domain protein [Natrialba magadii ATCC 43099]
          Length = 280

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 70/132 (53%), Gaps = 19/132 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F +LQGEG  AG  +VF R SGCNL           +C FCD+     + T     
Sbjct: 26  INELFYSLQGEGVLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPTHAW-M 73

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEP 124
            +D + D IE        +  + VLTGGEPLL    V L++AL++RG+   VETNGTI  
Sbjct: 74  ELDAILDEIESH------DADHVVLTGGEPLLHDASVALLEALDERGYHTTVETNGTIYR 127

Query: 125 PQGIDWICVSPK 136
              ID   +SPK
Sbjct: 128 DAPIDLASISPK 139


>gi|260914430|ref|ZP_05920899.1| radical SAM domain protein [Pasteurella dagmatis ATCC 43325]
 gi|260631531|gb|EEX49713.1| radical SAM domain protein [Pasteurella dagmatis ATCC 43325]
          Length = 209

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 106/222 (47%), Gaps = 39/222 (17%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y+I EIF +LQGEG + G  ++F RF  CNL            C +CDT++         
Sbjct: 11  YNIVEIFESLQGEGFNTGMPSIFVRFGKCNL-----------ACPWCDTNY--------N 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           +Y    L+ ++++         +  ++TGGEP +   +  L+  L   G+ +A+ETNG  
Sbjct: 52  QYTTWSLSQILQK---VRSFSAKNIIITGGEPTIVPKIEYLLDTLKAEGYFLAIETNGLK 108

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS----PENYIGFDFERFSL 173
             P  ID+I  SPK     K     I    E+++V  +   S     E  I  D  R+ L
Sbjct: 109 TIPSQIDYIATSPKRLYQHKYQQKCIPFANEVRIVADEDVFSFCEQIEQQIHAD--RYYL 166

Query: 174 QP--MDGP--FLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210
            P  +DG    LE  T +  ++     PKW+LS+QTHK IGI
Sbjct: 167 SPCEIDGEMNLLETITQIGLLNQRVNKPKWQLSIQTHKLIGI 208


>gi|170076908|ref|YP_001733546.1| radical SAM domain-containing protein [Synechococcus sp. PCC 7002]
 gi|169884577|gb|ACA98290.1| Radical SAM domain protein [Synechococcus sp. PCC 7002]
          Length = 218

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 100/217 (46%), Gaps = 31/217 (14%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I E F ++QGEG   G  A F R +GC++            C +CDT  +     +  
Sbjct: 24  YPIVETFHSIQGEGFWCGTAAFFIRLAGCDV-----------GCPWCDTK-ISWNPKRHP 71

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           + +V QL + ++        + +  V+TGGEPL+    PL   L + G  + +ET+G   
Sbjct: 72  QVSVGQLKEQVQT------AQPKIIVITGGEPLMHDLYPLTTGLKETGIPLHLETSGAHP 125

Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVN-----VSPENYIGFDFERFSLQP 175
                DW+ +SP   KA          ELK+V  Q        S    I  +  ++ LQP
Sbjct: 126 LNGHFDWLTLSPKPFKAPLPEIYDHVSELKVVIDQATDFQWAESQVQKIAANIPKY-LQP 184

Query: 176 M-DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             + P    + +L   Y   +P+WRL +QTHKF+G+R
Sbjct: 185 QWENP---ASQSLIFDYILAHPEWRLGLQTHKFLGVR 218


>gi|260435246|ref|ZP_05789216.1| organic radical activating enzyme [Synechococcus sp. WH 8109]
 gi|260413120|gb|EEX06416.1| organic radical activating enzyme [Synechococcus sp. WH 8109]
          Length = 205

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 108/222 (48%), Gaps = 41/222 (18%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F +LQGEG HAGR A F R +GC +            C +CDT            +
Sbjct: 9   VVETFHSLQGEGRHAGRSAFFIRLAGCTV-----------GCSWCDTK----HSWPSQGH 53

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTIEP 124
               +  L     +  E    + V+TGGEPL     PL QAL+ R G  + +ET+G ++P
Sbjct: 54  AEQPIGALASAAQMAAEAGASFVVITGGEPLHHNLQPLTQALDARCGLPLHLETSG-VDP 112

Query: 125 PQG-IDWICVSPKAGCDLK---IKGGQELKLVFPQVNVSPENYIGF----------DFER 170
             G  DWI +SPK     +   ++   ELK+V       PE+ I F          D ER
Sbjct: 113 LTGRFDWITLSPKRHRPPRQELLQACHELKVVV----HGPED-ISFAAAMASQCEDDTER 167

Query: 171 FSLQP-MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             LQP  +    EE   LA+ +  ++P+WRLS+Q+HK++GIR
Sbjct: 168 L-LQPGWESSIGEE---LALDHVRKHPQWRLSLQSHKWLGIR 205


>gi|167751865|ref|ZP_02423992.1| hypothetical protein ALIPUT_00107 [Alistipes putredinis DSM 17216]
 gi|167660106|gb|EDS04236.1| hypothetical protein ALIPUT_00107 [Alistipes putredinis DSM 17216]
          Length = 211

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 34/214 (15%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           E F T+QGEG H G+ A F R  GC++            CR+CD  +          Y  
Sbjct: 20  EDFYTIQGEGFHTGKPAYFIRLGGCDV-----------GCRWCDAKYTW----NPKLYPP 64

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQG 127
             +++++         + +  V+TGGEPLL    PL  AL   G +I +ET+G+      
Sbjct: 65  TDISEVVRR---ATSCQAQAIVITGGEPLLYPLGPLTSALKGHGLKIFLETSGSHPFSGY 121

Query: 128 IDWICVSPK-----------AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
            DW+C+SPK              +LK+   +E  L + + N      +G + + F LQP 
Sbjct: 122 FDWVCLSPKRQQPPLPEAFWRAHELKVIVEREADLQWAERNA---EQVGRECKLF-LQP- 176

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    EE   L + Y   +P W +S+QTHK++ I
Sbjct: 177 EWSVSEEIMPLLVEYVKAHPAWNISIQTHKYMHI 210


>gi|113970395|ref|YP_734188.1| radical activating enzyme [Shewanella sp. MR-4]
 gi|113885079|gb|ABI39131.1| radical activating enzyme [Shewanella sp. MR-4]
          Length = 222

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 106/234 (45%), Gaps = 42/234 (17%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL----------WSGREQDRLSAQCRFCDTD 53
           Y + E+F T+QGEG   G  A+F R  GC +          W   E++++S Q       
Sbjct: 3   YPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWGLLEENKVSPQ------Q 56

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
            + + G+  GR+       LIE     G    R+ V+TGGEP +     L   L+  GF 
Sbjct: 57  VITVDGSV-GRWANHTAQSLIEAFNAKG-YTARHVVITGGEPCMYDLNELTHTLHAAGFA 114

Query: 114 IAVETNGTIEPPQGID-WICVSPKAGCDLKIKGG-QELKLVFPQVN-----VSPENYI-- 164
             +ET+GT E     D W+ VSPK    + +KGG Q L     + N     ++ EN+I  
Sbjct: 115 TQIETSGTFEVKCDADTWVTVSPK----VNMKGGYQVLAQALTRANEIKHPIATENHIDE 170

Query: 165 ------GFD--FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                 G D   +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 171 LDELLKGIDVSVKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221


>gi|300772841|ref|ZP_07082710.1| radical SAM domain protein [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300759012|gb|EFK55839.1| radical SAM domain protein [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 207

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 93/212 (43%), Gaps = 26/212 (12%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F T+QGEG H G+ A F R  GC++            C +CD     ++ +     
Sbjct: 14  LMEEFYTIQGEGYHTGKAAYFIRLGGCDV-----------GCHWCD-----VKESWDAEL 57

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
           +    AD I E         +  V+TGGEPL+     L   L   G +  +ET+G     
Sbjct: 58  HPLTAADTIVEH--ANVHPSKTVVVTGGEPLIYNLDYLTSQLQNAGIQTFLETSGAYPLS 115

Query: 126 QGIDWICVSPK----AGCDLKIKGGQELKLVFPQVN---VSPENYIGFDFERFSLQPMDG 178
              DWIC+SPK       D+    G+   +VF + +         +  D  +  LQP + 
Sbjct: 116 GHWDWICLSPKKFKAPRPDVLANAGELKVIVFNKSDFQWAEEHARLVSDTCKLYLQP-EW 174

Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               E T L I Y   NPKW +S+QTHK++ I
Sbjct: 175 SKAAEMTPLIIDYVMANPKWEISLQTHKYLNI 206


>gi|91205678|ref|YP_538033.1| organic radical activating protein [Rickettsia bellii RML369-C]
 gi|157826864|ref|YP_001495928.1| organic radical activating protein [Rickettsia bellii OSU 85-389]
 gi|91069222|gb|ABE04944.1| Organic radical activating enzymes [Rickettsia bellii RML369-C]
 gi|157802168|gb|ABV78891.1| Organic radical activating enzymes [Rickettsia bellii OSU 85-389]
          Length = 225

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 106/224 (47%), Gaps = 44/224 (19%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68
           IF T+QGEG   G  A+F R  GCNL            C FCDT+F   +  K     +D
Sbjct: 23  IFKTIQGEGIFVGVPAIFIRLGGCNLA-----------CDFCDTEFENFETIK-----ID 66

Query: 69  QLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI--EP 124
            +   +    +  + E   +  V+TGGEP+ Q    L Q L ++ F++ +ETNGT+    
Sbjct: 67  DILSKVNLLALNSKNEQSVKLVVITGGEPMRQPIELLCQKLLEQDFKVQIETNGTLYRSL 126

Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL----------- 173
           P  +  IC SPKAG     K  ++L    P+++ + +  I  +   +SL           
Sbjct: 127 PDEVSIIC-SPKAGKKGYSKIREDL---LPKIS-AVKFIIAKNILEYSLIPEIGQTAYNI 181

Query: 174 ----QPM---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               QPM   D    +EN  LA+    ++   RLSVQTHKFIGI
Sbjct: 182 PVFVQPMDQNDQKLNKENNELAVKLALES-GARLSVQTHKFIGI 224


>gi|165976520|ref|YP_001652113.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876621|gb|ABY69669.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 210

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 101/222 (45%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + I EIF +LQGEG + G   +F R   CNL            C +CDT++         
Sbjct: 11  FPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY--------N 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            Y    LA ++E          ++ ++TGGEP +  ++  L+      G+ +A+ETNG  
Sbjct: 52  EYEKWSLAKILER---VKSYSAKHIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNGLK 108

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSP-----ENYIGFDFERFS 172
             P+ ID+I  SPK     K     I    E+++V  + +V       E  I  +    S
Sbjct: 109 AVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVVDKGDVQSFCEQIETQITAEHYYLS 168

Query: 173 LQPMDGP--FLEENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211
              +DG    LE  T L I +     PKW+LS+QTHK +GI 
Sbjct: 169 PCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGIE 210


>gi|322831395|ref|YP_004211422.1| Radical SAM domain protein [Rahnella sp. Y9602]
 gi|321166596|gb|ADW72295.1| Radical SAM domain protein [Rahnella sp. Y9602]
          Length = 223

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 104/227 (45%), Gaps = 27/227 (11%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60
           Y I E+F TLQGEG   G  A+F R  GC +   W   +        R  D   + ++  
Sbjct: 3   YPINEMFETLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWDKIADREVDMQRILVKTE 62

Query: 61  KG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +    G    +QL ++I +Q  T     R+ V+TGGEP +     L   L K GF   +E
Sbjct: 63  ESDAWGNATSEQLLEVIAQQGYTA----RHVVITGGEPCIYDLTELTSLLEKSGFSCQIE 118

Query: 118 TNGTIEPPQGID-WICVSPKA----GCDL---KIKGGQELKL-VFPQVNVSP-----ENY 163
           T+GT E    ++ W+ VSPK     G D+    +K   E+K  V  Q ++       E  
Sbjct: 119 TSGTHEVRCSVNTWVTVSPKVNMRGGYDILPQALKRADEVKHPVARQRDIDALDALLETL 178

Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                   +LQP+     EE T L I+ C     WRLS+QTHK++ I
Sbjct: 179 TDSKARIIALQPISQK--EEATRLCIATCIAR-NWRLSMQTHKYLNI 222


>gi|311746196|ref|ZP_07719981.1| radical activating enzyme [Algoriphagus sp. PR1]
 gi|126576423|gb|EAZ80701.1| radical activating enzyme [Algoriphagus sp. PR1]
          Length = 208

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 99/212 (46%), Gaps = 26/212 (12%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F T+QGEG   G  A F R  GC++            C +CD      +  + G++
Sbjct: 15  LMEAFYTIQGEGRFTGHPAYFIRLGGCDV-----------GCVWCDVK----ESWEAGKW 59

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
            +  + +++ E     +  GR  V+TGGEPL+    PL   L ++GF   +ET+G     
Sbjct: 60  PILPIEEIVAE---AVKYPGRLVVITGGEPLMYDLGPLTSLLKEKGFTTNIETSGAHPFS 116

Query: 126 QGIDWICVSPKAGCDLK---IKGGQELKLVF---PQVNVSPENYIGFDFE-RFSLQPMDG 178
              DW+C SPK          K   ELK+V         + E+ +  +      LQP + 
Sbjct: 117 GDFDWVCFSPKKFKKPHPSIYKVANELKVVVFHNSDFAFAEEHALKVNENCELRLQP-EW 175

Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              E+ T L I+Y   +P W++S+QTHKF+ I
Sbjct: 176 SKSEKFTPLIINYSKYHPNWKISLQTHKFMDI 207


>gi|313157136|gb|EFR56566.1| radical SAM domain protein [Alistipes sp. HGB5]
          Length = 211

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 99/223 (44%), Gaps = 40/223 (17%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +L  + E F T+QGEG HAG+ A F R  GC++            CR+CD  +       
Sbjct: 14  RLLPLVEDFYTIQGEGFHAGKPAYFIRLGGCDV-----------GCRWCDAKYTW----N 58

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
              Y    +  +I+          +  V+TGGEPLL     L + L+++G +I +ET+GT
Sbjct: 59  PKLYPPTDVRTVIDRALAC---PAQAIVITGGEPLLYPLGVLTETLHEKGLQIFLETSGT 115

Query: 122 IEPPQGIDWICVSPK---AGCDLKIKGGQELKLVFPQ-----------VNVSPENYIGFD 167
                  DW+C+SPK      D  ++   ELK++                V PE  +   
Sbjct: 116 HPFSGYFDWVCLSPKRQQPPLDEALERAHELKVIVESESDFEWAERNAARVRPECML--- 172

Query: 168 FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                LQP +    E      + Y   +PKW +S+QTHK++ I
Sbjct: 173 ----YLQP-EWSVAERVMPAMVEYAKAHPKWNISIQTHKYMHI 210


>gi|307132359|ref|YP_003884375.1| hypothetical protein Dda3937_00204 [Dickeya dadantii 3937]
 gi|306529888|gb|ADM99818.1| conserved protein [Dickeya dadantii 3937]
          Length = 223

 Score = 84.7 bits (208), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 109/236 (46%), Gaps = 43/236 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-------- 54
           LY I E+F TLQGEG   G  AVF R  GC +            C +CDT          
Sbjct: 2   LYPINEMFQTLQGEGFFTGVPAVFIRLQGCPV-----------GCSWCDTKHTWEKRPER 50

Query: 55  ------VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                 V ++  +   ++     DLI++    G    R+ V+TGGEP +    PL QAL 
Sbjct: 51  QISLAEVLVKSGESDAWSGSSAGDLIQQIARQGYT-ARHVVITGGEPCIHDLTPLTQALE 109

Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPK-------AGCDLKIKGGQELKL-VFPQVNVS 159
           ++GF   +ET+GT E     + W+ VSPK       A  D  ++   E+K  V  + ++ 
Sbjct: 110 QQGFSTQIETSGTHEVRCSPNCWVTVSPKVNMRGGLAVLDQALQRANEIKHPVARERDIE 169

Query: 160 PENYI--GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             + +    D ++    +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 170 ALDALLARLDDDKARVVALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|304413345|ref|ZP_07394818.1| radical SAM superfamily domain-containing hypothetical protein
           [Candidatus Regiella insecticola LSR1]
 gi|304284188|gb|EFL92581.1| radical SAM superfamily domain-containing hypothetical protein
           [Candidatus Regiella insecticola LSR1]
          Length = 265

 Score = 84.7 bits (208), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 104/243 (42%), Gaps = 54/243 (22%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54
           Y I EIF +LQGEG      A+F R  GC              C +CDT           
Sbjct: 42  YPINEIFQSLQGEGYFTNVPAIFIRLQGC-----------PVACSWCDTKHTWDIKKDKE 90

Query: 55  VGIQGTKGGRYNVDQLADLIEEQWITGEKE---GRYCVLTGGEPLLQVDVPLIQALNKRG 111
           + IQG        D  ++  E+Q +   KE    R+ V+TGGEP L    PL   L + G
Sbjct: 91  IDIQGITVKTVAKDTWSNANEQQLVAICKEKYQARHVVITGGEPCLYDLQPLTSLLEENG 150

Query: 112 FEIAVETNGTIEPPQ--GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
           +   +ET+GT  P +     W+ VSPK G    +KGG  LKL+   +  + E       E
Sbjct: 151 YRCQIETSGT-HPVRCSTASWVTVSPKIG----MKGG--LKLLDQALQRADEIKHPVARE 203

Query: 170 R-------------------FSLQPMDG--PFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           R                    +LQP+       EE T L I  C ++  WRLSVQ HK++
Sbjct: 204 RDIERLNNLLDKLNDGKKPVIALQPIRKTEKESEEATKLCIETCIKH-NWRLSVQMHKYL 262

Query: 209 GIR 211
            IR
Sbjct: 263 KIR 265


>gi|284036696|ref|YP_003386626.1| organic radical activating enzyme [Spirosoma linguale DSM 74]
 gi|283815989|gb|ADB37827.1| organic radical activating enzyme [Spirosoma linguale DSM 74]
          Length = 216

 Score = 84.7 bits (208), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 37/218 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F T+QGEG H GR A F R  GC++            C +CD     ++ +     
Sbjct: 22  VMEAFYTIQGEGAHTGRAAYFIRLGGCDV-----------GCHWCD-----VKESWDADA 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
           +  Q  D + +  +  +  GR  V+TGGEPL+     L +AL   GF+  +ET+G  +  
Sbjct: 66  HPKQSIDALVKGAL--QYPGRLAVITGGEPLMHDLTALTEALQVAGFKTNIETSGVCQTV 123

Query: 126 QGI-DWICVSPKAGCDLK---IKGGQELK-LVFPQVNVS-PENYIGFDFERFSLQPMDGP 179
            G  DWIC SPK          +   ELK +++ Q + +  E+++ +      L+P    
Sbjct: 124 TGSWDWICFSPKKFKKPNPAIYEKADELKVIIYNQSDFAFAESFVPY------LRPDCKL 177

Query: 180 FLE-------ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           FL+       E     + Y   +P+W++S+QTHKF+ I
Sbjct: 178 FLQSEWGRSNEMLPRIVDYVKDHPQWQISLQTHKFLNI 215


>gi|227537400|ref|ZP_03967449.1| radical SAM domain protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242778|gb|EEI92793.1| radical SAM domain protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 207

 Score = 84.7 bits (208), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 93/212 (43%), Gaps = 26/212 (12%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F T+QGEG H G+ A F R  GC++            C +CD     ++ +     
Sbjct: 14  LMEEFYTIQGEGYHTGKAAYFIRLGGCDV-----------GCHWCD-----VKESWDAEL 57

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
           +    AD I E         +  V+TGGEPL+     L   L   G +  +ET+G     
Sbjct: 58  HPLTAADTIVEH--ANVHPSKTVVVTGGEPLIYNLDYLTSQLQNAGIQTFLETSGAYPLS 115

Query: 126 QGIDWICVSPK----AGCDLKIKGGQELKLVFPQVN---VSPENYIGFDFERFSLQPMDG 178
              DWIC+SPK       D+    G+   +VF + +         +  D  +  LQP + 
Sbjct: 116 GHWDWICLSPKKFKAPRPDVLANAGELKVIVFNKSDFQWAEEHARLVNDTCKLYLQP-EW 174

Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               E T L I Y   NPKW +S+QTHK++ I
Sbjct: 175 SKAAEMTPLIIDYVMANPKWEISLQTHKYLNI 206


>gi|157964748|ref|YP_001499572.1| organic radical activating protein [Rickettsia massiliae MTU5]
 gi|157844524|gb|ABV85025.1| Organic radical activating enzyme [Rickettsia massiliae MTU5]
          Length = 231

 Score = 84.7 bits (208), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 107/227 (47%), Gaps = 44/227 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           ++ IF T+QGEG   G  A+F R  GCNL            C FCDT+F           
Sbjct: 26  VQSIFKTIQGEGIFVGCPAIFIRLGGCNLA-----------CNFCDTEFEDFD-----LV 69

Query: 66  NVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122
           ++DQ+ + +E   +    EK     V+TGGEP+ Q    L Q L  R  ++ +ETNGT+ 
Sbjct: 70  DIDQILNKVESLALNSKNEKSINLVVITGGEPMRQPIELLCQKLLDRDVKVQIETNGTLY 129

Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN----VSPENYI-----------GF 166
              PQ +  IC SPKAG     K  +EL    P+++    +  +N +            +
Sbjct: 130 RSLPQEVSIIC-SPKAGKTGYSKIREEL---LPKISAVKFIVAKNILEYSLIPEVGQTSY 185

Query: 167 DFERFSLQPMDGP---FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +   F +QPMD        EN  LA+    ++   RLS+QTHKF+ I
Sbjct: 186 NIPVF-IQPMDQNDQRLNGENNELAVKLALES-GARLSLQTHKFLNI 230


>gi|67458743|ref|YP_246367.1| organic radical activating protein [Rickettsia felis URRWXCal2]
 gi|67004276|gb|AAY61202.1| Organic radical activating enzymes [Rickettsia felis URRWXCal2]
          Length = 225

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 109/228 (47%), Gaps = 44/228 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           ++ IF T+QGEG   G  A+F R  GCNL            C FCDT+F   +       
Sbjct: 20  VQSIFKTIQGEGIFVGCPAIFIRLGGCNLA-----------CNFCDTEFEDFK-----LV 63

Query: 66  NVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122
           ++ ++ + +E   +    EK     V+TGGEP+ Q    L Q L  + F+I +ETNGT+ 
Sbjct: 64  DIAEILNKVESLALNSKNEKSINLVVITGGEPMRQPIELLCQKLLDQDFKIQIETNGTLY 123

Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL-------- 173
              P  +  IC SPKAG +   K  ++L    P+++ + +  I  +   +SL        
Sbjct: 124 RSLPNEVSIIC-SPKAGKNGYSKIREDL---LPKIS-AVKFIIAKNILEYSLIPEVGQTS 178

Query: 174 -------QPM---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                  QPM   D    +EN  LA+    ++   RLS+QTHKF+GI 
Sbjct: 179 YNIPVFVQPMDQNDQSLNDENNELAVKLALES-GARLSLQTHKFLGIE 225


>gi|261492302|ref|ZP_05988864.1| NrdG protein [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495367|ref|ZP_05991816.1| NrdG protein [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308970|gb|EEY10224.1| NrdG protein [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311985|gb|EEY13126.1| NrdG protein [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 208

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 108/220 (49%), Gaps = 35/220 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + I EIF +LQGEG + G  A+F RF  CNL            C +CDT++         
Sbjct: 10  FPIVEIFESLQGEGFNTGMPAIFVRFGKCNL-----------TCPWCDTNY--------N 50

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           ++    L+D++ +         +  ++TGGEP +Q ++  L++   K G+ +A+ETNG  
Sbjct: 51  QFEQWTLSDILAK---VRSYSAKNVIITGGEPTIQPNLSLLLEQFKKEGYFLAIETNGLK 107

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFP-QVNVSPENYIG-FDFERFSLQP 175
           E P  ID+I  SPK     K     I+   E+++V   +V    E        E + L P
Sbjct: 108 EVPAQIDYIATSPKRMYQEKYQRRCIEFANEVRIVVDGEVQGFCEQIESQIKAEHYYLSP 167

Query: 176 --MDGP--FLEENTNLAISYCFQN-PKWRLSVQTHKFIGI 210
             ++G    LE  T + +     N PKW+LS+QTHK +GI
Sbjct: 168 CEVEGKMNLLETITQIGLLNQRPNKPKWQLSIQTHKIVGI 207


>gi|71282067|ref|YP_269647.1| hypothetical protein CPS_2947 [Colwellia psychrerythraea 34H]
 gi|71147807|gb|AAZ28280.1| conserved hypothetical protein [Colwellia psychrerythraea 34H]
          Length = 226

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 109/231 (47%), Gaps = 34/231 (14%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQD-RLSAQCRFCDTDFVGIQG 59
           Y I EIF TLQGEG   G+ ++F R  GC +   W   +    +S +      + V  + 
Sbjct: 7   YKINEIFETLQGEGSFTGQPSIFIRLQGCPVGCSWCDTKHTWEVSLEQEVAQNNIVSKKS 66

Query: 60  TKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
                G + + QL +L    +++   + ++ V+TGGEP +    PL Q     G+   VE
Sbjct: 67  ENDSWGIFTIVQLKEL----FLSEGYQAKHIVITGGEPCMYDLKPLCQNFEALGYSCQVE 122

Query: 118 TNGTIEPPQGID-WICVSPKAGCDLKIKGG-QELKLVFPQVN-----VSPENYIG----- 165
           T+GT E       W+ VSPK    + +KGG + LK    + +     V+ E +I      
Sbjct: 123 TSGTFEIQVSKKCWVTVSPK----VNMKGGFKVLKSALLRADEIKHPVATEQHIDDLKAL 178

Query: 166 -----FDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                 + ++  +QP+     +  T LAI  C +N  WRLSVQ HK+IGI 
Sbjct: 179 LNEHEIENKQIYIQPISQK--KRATELAIRSCIEN-NWRLSVQVHKYIGIE 226


>gi|318040803|ref|ZP_07972759.1| putative organic radical activating protein [Synechococcus sp.
           CB0101]
          Length = 216

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 94/221 (42%), Gaps = 33/221 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F +LQGEG H+GR A F R  GC           S  C +CDT     Q      +
Sbjct: 14  VVETFHSLQGEGLHSGRSAWFIRLGGC-----------SVGCSWCDTKHSWPQDV----H 58

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
            +  L  L +E          + V+TGGEPL     PL +AL   G  + +ET+G     
Sbjct: 59  PLQSLEALQQEAQSAVANGAAFVVITGGEPLEHHLAPLCEALQPFGVPLHLETSGVGAFT 118

Query: 126 QGIDWICVSPKAG---CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL------QPM 176
               WI +SPK         +    ELK+V   V+ + +          SL      QP 
Sbjct: 119 GAFAWITLSPKPHRPPTPEVLAACHELKVV---VHEAADLAFAEAMAAASLNGRNNDQPA 175

Query: 177 DGPFLEE------NTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               L+          LAI Y   +P WRLS+Q+HK++G+R
Sbjct: 176 PALLLQPGWQSTTGQQLAIDYVRSHPSWRLSLQSHKWLGVR 216


>gi|261822768|ref|YP_003260874.1| hypothetical protein Pecwa_3531 [Pectobacterium wasabiae WPP163]
 gi|261606781|gb|ACX89267.1| conserved hypothetical protein [Pectobacterium wasabiae WPP163]
          Length = 223

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 110/229 (48%), Gaps = 31/229 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58
           Y I E+F TLQGEG   G  AVF R  GC +   W   +   D+L+ +    D   V  +
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAVFVRLQGCPVGCSWCDTKHTWDKLAERETSLDLVLVKTE 62

Query: 59  GTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
            +   G  + D +  L+ +Q  T     R+ V+TGGEP +    PL   L K+GF   +E
Sbjct: 63  ESDAWGAASADDILALMVQQGYTA----RHIVITGGEPCIHDLAPLTLQLEKQGFSCQIE 118

Query: 118 TNGTIE---PPQGIDWICVSPKAG-------CDLKIKGGQELKL-VFPQVNVSPENYI-- 164
           T+GT +    P+   W+ VSPK          D  ++   E+K  V  + ++   + +  
Sbjct: 119 TSGTHDVRCSPKT--WVTVSPKVNMRGGMKVLDQALQRADEIKHPVARERDIEALDALLA 176

Query: 165 GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             D ++    +LQP+     E+ T L I+ C     WRLS+QTHK++ I
Sbjct: 177 RLDDDKPRIVALQPISQK--EDATKLCIATCIAR-NWRLSMQTHKYLNI 222


>gi|54309500|ref|YP_130520.1| putative organic radical activating enzyme [Photobacterium
           profundum SS9]
 gi|46913936|emb|CAG20718.1| putative organic radical activating enzymes [Photobacterium
           profundum SS9]
          Length = 222

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 33/231 (14%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCD-TDFVGIQ 58
           +Y I E+F T+QGEG   G  A+F R   C +   W   +Q   +    +    D +  +
Sbjct: 1   MYKINEVFETIQGEGTFTGVPAIFVRLQVCPVGCSWCDTKQTWDAEPTDYASLNDIMAKK 60

Query: 59  GTKGGRYNVDQ--LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
           G      N+D   +  L+++Q  T     R+ V+TGGEP +   VPL  AL   GF   +
Sbjct: 61  GDSPLWTNIDAQGIVTLLQDQGYTA----RHVVITGGEPCIYDLVPLTAALETAGFNCQI 116

Query: 117 ETNGTIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNVSPE--NYIGFDFERFSL 173
           ET+GT E     + W+ VSP      KI    +L ++   ++ + E  + +G   +   L
Sbjct: 117 ETSGTSEILATENTWVTVSP------KINMKAKLPVLASALSRADEIKHPVGTSKDIKQL 170

Query: 174 QPM-DGPFLEENTNLAISYCFQNPK-------------WRLSVQTHKFIGI 210
             + DG  L++N  +A+    Q P+             WRLS+QTHK++ I
Sbjct: 171 DALIDGVILKQNVTIALQPISQKPRATDLCIETCIKRNWRLSIQTHKYLAI 221


>gi|268591373|ref|ZP_06125594.1| radical SAM domain protein [Providencia rettgeri DSM 1131]
 gi|291313351|gb|EFE53804.1| radical SAM domain protein [Providencia rettgeri DSM 1131]
          Length = 223

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 110/236 (46%), Gaps = 43/236 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSG------REQDRLSAQCRFCDTDF 54
           Y I EIF T+QGEG   G  AVF R  GC +   W        +EQD+ S      D   
Sbjct: 3   YPINEIFQTIQGEGVFTGVPAVFIRLQGCPVGCSWCDTKQTWEKEQDKEST---LGDIAL 59

Query: 55  VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
             I        + + L  L++E+  + +    + V+TGGEP +    PL   L + G++ 
Sbjct: 60  KTIDSDAWAMADGEALVQLMKEKHFSAQ----HIVITGGEPCIYDLQPLTGILEQHGYQC 115

Query: 115 AVETNGTIEPPQGID--WICVSPKAGCDLKIKGGQELKLVFPQVN--------VSPENYI 164
            +ET+GT  P Q  D  W+ VSPK G    +KGG  L+++   VN        V+ E  I
Sbjct: 116 QIETSGTY-PIQCTDNTWVTVSPKVG----MKGG--LQVISQAVNRANEIKHPVAREKDI 168

Query: 165 GFDFERFSLQPMDGPFL---------EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               +  +L+ ++ P +            T L I  C Q   WRLS+QTHK++ I+
Sbjct: 169 EALEKILALRTVETPPVVALQPISQKAAATKLCIETCIQR-NWRLSIQTHKYLDIQ 223


>gi|212702071|ref|ZP_03310199.1| hypothetical protein DESPIG_00073 [Desulfovibrio piger ATCC 29098]
 gi|212674512|gb|EEB34995.1| hypothetical protein DESPIG_00073 [Desulfovibrio piger ATCC 29098]
          Length = 225

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 104/240 (43%), Gaps = 44/240 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M+  ++ E F+TLQGE   AG  AVF RF GC +       + +A+      DF  ++  
Sbjct: 1   MRTLAVNEFFVTLQGEASFAGTPAVFVRFQGCPVACPWCDTQYAARLDGATLDFAAVRAK 60

Query: 61  KGGRYNVDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
           +G        AD+  E  +   +E   R+ VLTGGEP       L   L   GF + +ET
Sbjct: 61  QGPGAG---YADVEPEALLAAIREAGPRHVVLTGGEPCRHDLTELTSRLVTEGFRVQIET 117

Query: 119 NGTIEPPQGID-WICVSPKAGCDLKIKGGQELK---------LVFPQVNVSPENYIGFDF 168
           +GT+      D W+ +SPK    L + GG E++         + FP    +       D 
Sbjct: 118 SGTMPIRCHADVWVTLSPK----LDMPGGLEVRQDAWERAGEIKFPVDTAA-------DL 166

Query: 169 ERF------SLQPMDGPFLE-----------ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            RF      + Q    P  E           E T L +   F + +WR+SVQ HK++ +R
Sbjct: 167 ARFEQALAVARQAASRPLTELVWLQPVSQGKEATRLCVEAAFAH-QWRVSVQVHKYLDLR 225


>gi|89890614|ref|ZP_01202124.1| organic radical activating enzyme [Flavobacteria bacterium BBFL7]
 gi|89517529|gb|EAS20186.1| organic radical activating enzyme [Flavobacteria bacterium BBFL7]
          Length = 219

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 37/220 (16%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + E F T+QGEG H G+ A F R  GC++            C +CD         K 
Sbjct: 24  MLPLMEEFYTIQGEGSHTGKAAYFIRVGGCDV-----------GCHWCDV--------KE 64

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                      +E       K  +  V+TGGEPL     PL   L + G ++ +ET+G  
Sbjct: 65  SWDQEKHPPTAVEAIVANAAKYSKTIVVTGGEPLTWDMGPLTTGLKEEGMQVHIETSGAY 124

Query: 123 EPPQGIDWICVSPKAGCDLKI------KGGQELKLVFPQVNVSPENYIGFDFERFS---- 172
                 DWIC+SPK    +K+      +   ELK++    N     +   + E+ S    
Sbjct: 125 PLSGTWDWICLSPK---KMKMPLPEVYEAAHELKVIV--FNKHDFAFAKAEAEKVSSNCK 179

Query: 173 --LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             LQP +    E+   L   +  +NP+W +S+QTHK++ I
Sbjct: 180 LYLQP-EWSVREKMIPLITEFVMENPEWHVSLQTHKYLNI 218


>gi|50122475|ref|YP_051642.1| hypothetical protein ECA3554 [Pectobacterium atrosepticum SCRI1043]
 gi|49613001|emb|CAG76452.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 223

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 110/229 (48%), Gaps = 31/229 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58
           Y I E+F TLQGEG   G  AVF R  GC +   W   +   D+L+ +    D   V  +
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAVFVRLQGCPVGCSWCDTKHTWDKLAERETSLDQVLVKTE 62

Query: 59  GTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
            +   G  + D +  L+ +Q  T     R+ V+TGGEP +    PL   L K+GF   +E
Sbjct: 63  ESDAWGAASADDILALMAQQGYTA----RHIVITGGEPCIHDLAPLTLQLEKQGFSCQIE 118

Query: 118 TNGTIE---PPQGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQVNVSPENYI-- 164
           T+GT +    P+   W+ VSPK          D  ++   E+K  V  + ++   + +  
Sbjct: 119 TSGTHDVRCSPKT--WVTVSPKVNMRGGMKVLDQALQRADEIKHPVARERDIEALDTLLA 176

Query: 165 GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             D ++    +LQP+     ++ T L I+ C     WRLS+QTHK++ I
Sbjct: 177 RLDDDKPRIVALQPISQK--DDATKLCIATCIAR-NWRLSMQTHKYLNI 222


>gi|317492851|ref|ZP_07951275.1| radical SAM domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918973|gb|EFV40308.1| radical SAM domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 223

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 105/244 (43%), Gaps = 61/244 (25%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54
           Y I E+F TLQGEG + G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINELFQTLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEQLPERE 51

Query: 55  VGI--------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
           +G+        +    G    DQL  ++ E+  T     R+ V+TGGEP +    PL + 
Sbjct: 52  IGMNEILIKTAESDAWGSATPDQLLAILHERGYTA----RHVVITGGEPCIHDLRPLTEL 107

Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG 165
           LN+ GF   +ET+GT E       W+ VSPK    + +KGG  +K++   +  + E    
Sbjct: 108 LNQHGFSCQIETSGTHEIRCSDATWVTVSPK----VNMKGG--MKVLESALIRADEVKHP 161

Query: 166 FDFER-------------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHK 206
              ER                    +LQP+     E  T L I  C     WRLS+QTHK
Sbjct: 162 VARERDIEDLDTLLAVLHDDKQRIIALQPISQK--ESATKLCIETCIAR-NWRLSMQTHK 218

Query: 207 FIGI 210
           ++ I
Sbjct: 219 YLNI 222


>gi|313206128|ref|YP_004045305.1| radical sam domain protein [Riemerella anatipestifer DSM 15868]
 gi|312445444|gb|ADQ81799.1| Radical SAM domain protein [Riemerella anatipestifer DSM 15868]
 gi|315022935|gb|EFT35958.1| Queuosine Biosynthesis QueE Radical SAM [Riemerella anatipestifer
           RA-YM]
          Length = 209

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 91/220 (41%), Gaps = 43/220 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F T+QGEG + G+ A F R  GC++            C +CD         +    
Sbjct: 17  VMEHFYTIQGEGAYTGKAAYFIRLGGCDV-----------GCHWCDVK-------ESWDP 58

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
           N+  L D  E   I      +  VLTGGEPL+     L + L   G  I +ET+G  E  
Sbjct: 59  NLHPLMDAEEVAQIAA-NHSKTIVLTGGEPLMWNLEILTKKLKDLGCTIHIETSGAYEIS 117

Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185
             IDW+C+SPK       K G   + ++ + N      I F+   F         + +N 
Sbjct: 118 GHIDWVCLSPK-------KTGLPKESIYAKAN--ELKVIIFNNHDFKFAEEQASKVSQNC 168

Query: 186 NLAI---------------SYCFQNPKWRLSVQTHKFIGI 210
              +                Y  +NPKW+ SVQTHK++ I
Sbjct: 169 KFYLQSEWSKRDEMYPKITDYILENPKWQASVQTHKYLNI 208


>gi|253689736|ref|YP_003018926.1| hypothetical protein PC1_3374 [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756314|gb|ACT14390.1| conserved hypothetical protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 223

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 110/229 (48%), Gaps = 31/229 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58
           Y I E+F TLQGEG   G  AVF R  GC +   W   +   D+L+ +    D   V  +
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAVFVRLQGCPVGCSWCDTKHTWDKLAERETSLDQVLVKTE 62

Query: 59  GTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
            +   G  + D +  L+ +Q  T     R+ V+TGGEP +    PL   L K+GF   +E
Sbjct: 63  ESDAWGAASADDILALMTQQGYTA----RHIVITGGEPCIHDLTPLTLQLEKQGFSCQIE 118

Query: 118 TNGTIE---PPQGIDWICVSPKAG-------CDLKIKGGQELKL-VFPQVNVSPENYI-- 164
           T+GT +    P+   W+ VSPK          D  ++   E+K  V  + ++   + +  
Sbjct: 119 TSGTHDVRCSPKT--WVTVSPKVNMRGGMKVLDQALQRADEIKHPVARERDIEALDALLA 176

Query: 165 GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             D ++    +LQP+     ++ T L I+ C     WRLS+QTHK++ I
Sbjct: 177 RLDDDKPRIVALQPISQK--DDATKLCIATCIAR-NWRLSMQTHKYLNI 222


>gi|167856373|ref|ZP_02479100.1| hypothetical protein HPS_10855 [Haemophilus parasuis 29755]
 gi|167852511|gb|EDS23798.1| hypothetical protein HPS_10855 [Haemophilus parasuis 29755]
          Length = 204

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 104/225 (46%), Gaps = 45/225 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF TLQGEG + G  ++F RF  CNL            C +CDT++         
Sbjct: 6   YRIVEIFETLQGEGFNTGMPSIFIRFGKCNL-----------ACPWCDTNY--------N 46

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-RGFEIAVETNGTI 122
           +Y    LAD+++   +      +  ++TGGEP +Q+D+  +    K  G+ IA+ETNG  
Sbjct: 47  QYETKTLADIMQ---VVKGFSAKNIIITGGEPTIQLDLTYLLDTLKAEGYFIAIETNGLK 103

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN----VSPENYIGF--------DFER 170
             P  ID+I  SPK     ++     LK   P  N    V   + + F          ER
Sbjct: 104 PVPPQIDYIATSPK-----RLYQKNYLKHHIPFANEVRIVVDGDVLAFCEQIESTIKAER 158

Query: 171 FSLQPMDG----PFLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210
           + L P +       LE  T L  ++     P+W+LS+QTHK  GI
Sbjct: 159 YYLSPCEENGVMNMLETITQLGKLNQRPNKPRWQLSIQTHKMAGI 203


>gi|261380779|ref|ZP_05985352.1| radical SAM domain protein [Neisseria subflava NJ9703]
 gi|284796241|gb|EFC51588.1| radical SAM domain protein [Neisseria subflava NJ9703]
          Length = 211

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 103/222 (46%), Gaps = 38/222 (17%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 12  YRIVEIFESLQGEGWNTGMPAVFIRLGKCNL-----------ACSWCDTDYL-------- 52

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           ++ +  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 53  KFGMMSLSDILGR---LKTYTARNIIITGGEPTIQPHLDTLLNALKAEGYFLCIETNGLN 109

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF--DFER------FSLQ 174
             P  ID++  SPKA    K + G   K    ++ V+  + I F  + ER      + L 
Sbjct: 110 PAPPQIDYVATSPKACYAAKYESGCIEKADEVRI-VADGDVIAFCQEMERKIRAQHYYLS 168

Query: 175 P--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
           P   DG     +T   I      P     W+LSVQTHK+ GI
Sbjct: 169 PCEQDGVMNIYDTIRQIGVLNSRPDAPVHWQLSVQTHKWAGI 210


>gi|71280858|ref|YP_269588.1| radical SAM domain-containing protein [Colwellia psychrerythraea
           34H]
 gi|71146598|gb|AAZ27071.1| radical SAM domain protein [Colwellia psychrerythraea 34H]
          Length = 222

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 104/236 (44%), Gaps = 44/236 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT---------DF 54
           Y I E+F T+QGEG   G+ ++F R  GC +            C +CDT         D 
Sbjct: 3   YKINELFETIQGEGSFTGQPSIFIRLQGCPV-----------GCSWCDTKHTWDIELDDQ 51

Query: 55  VGIQGTKGGRYNVDQLADLIEEQWITGEKE----GRYCVLTGGEPLLQVDVPLIQALNKR 110
           V        +    Q A+   E  +   KE     ++ V+TGGEP +    PL +     
Sbjct: 52  VSPDIMLAKKAETSQWANFSAEDILALVKEKHFKAKHIVITGGEPCMVDLTPLCETFEDL 111

Query: 111 GFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENY 163
           G+   +ET+GT E       W+ VSPK    +K++GG + L     + N     V+ E  
Sbjct: 112 GYSTQIETSGTFEIITTEKCWVTVSPK----IKMRGGYDILASAMSRANEIKHPVATEQN 167

Query: 164 IGFDFERFSLQPMDG------PFLEEN--TNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +    E  ++  ++       P  ++   T LAI+ C  N  WRLSVQ HK+IGI 
Sbjct: 168 VDDLKELLAMHQVENTPVYLQPISQKKRATELAIATCIAN-NWRLSVQVHKYIGIE 222


>gi|33866959|ref|NP_898518.1| organic radical activating protein [Synechococcus sp. WH 8102]
 gi|33639560|emb|CAE08944.1| possible organic radical activating enzyme [Synechococcus sp. WH
           8102]
          Length = 206

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 100/213 (46%), Gaps = 23/213 (10%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F +LQGEG H+GR A F R +GCN+            C +CDT       T   R 
Sbjct: 10  VVETFHSLQGEGHHSGRSAFFIRLAGCNV-----------GCPWCDTKHSWPVNTHPQR- 57

Query: 66  NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNK-RGFEIAVETNGTIE 123
           ++  LA  +E+     E+ G  + V+TGGEPL      L  AL +     + +ET+G   
Sbjct: 58  SLRALAADVEQ----AERNGAAFTVITGGEPLQHNLDGLASALREASSHPLHLETSGVDG 113

Query: 124 PPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVN--VSPENYIGFDFERFSLQPMDG 178
                DWI +SPK     +   +    ELK+V    +  +  E+      ++  L    G
Sbjct: 114 LSGDPDWITLSPKPHRPPRQELLSHCDELKVVIHTADDLLFAESMAAAVSKQTVLLLQPG 173

Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               E   LAI +    P+WRLS+QTHK++G+R
Sbjct: 174 WDSSEGQRLAIDHVQNQPRWRLSLQTHKWLGVR 206


>gi|307261578|ref|ZP_07543246.1| hypothetical protein appser12_11390 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868701|gb|EFN00510.1| hypothetical protein appser12_11390 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 210

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 100/222 (45%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + I EIF +LQGEG + G   +F R   CNL            C +CDT++         
Sbjct: 11  FPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY--------N 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            Y    LA ++E          +  ++TGGEP +  ++  L+      G+ +A+ETNG  
Sbjct: 52  EYEKWSLAKILER---VKSYSAKNIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNGLK 108

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSP-----ENYIGFDFERFS 172
             P+ ID+I  SPK     K     I    E+++V  + +V       E  I  +    S
Sbjct: 109 AVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVVDKGDVQSFCEQIETQITAEHYYLS 168

Query: 173 LQPMDGP--FLEENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211
              +DG    LE  T L I +     PKW+LS+QTHK +GI 
Sbjct: 169 PCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGIE 210


>gi|326800682|ref|YP_004318501.1| radical SAM protein [Sphingobacterium sp. 21]
 gi|326551446|gb|ADZ79831.1| Radical SAM domain protein [Sphingobacterium sp. 21]
          Length = 230

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 95/215 (44%), Gaps = 26/215 (12%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           L  + E F T+QGEG H G+ A F R  GC++            C +CD      +    
Sbjct: 34  LLPLMEEFYTIQGEGYHTGKAAYFIRLGGCDV-----------GCHWCDVK----ESWDA 78

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             + + +  D+I           +  V+TGGEPL+     L + L   G +  +ET+G  
Sbjct: 79  ELHPLTKADDIIRN---AARYPAKTVVITGGEPLIYNLDYLTRGLQDAGIKTFIETSGAY 135

Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVSPENYIGFDF---ERFSLQP 175
                 DW+C+SP   KA     I+   ELK +VF + +               +  LQP
Sbjct: 136 PLSGHWDWVCLSPKKFKAPLPDVIEAAGELKVIVFNKSDFEWAERYAAQIPVGRKLYLQP 195

Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +     + T L I Y  +NPKW +S+QTHK++ I
Sbjct: 196 -EWSKAAQMTPLIIDYVKENPKWEISLQTHKYLNI 229


>gi|33864484|ref|NP_896044.1| putative organic radical activating protein [Prochlorococcus
           marinus str. MIT 9313]
 gi|33641264|emb|CAE22394.1| possible organic radical activating enzyme [Prochlorococcus marinus
           str. MIT 9313]
          Length = 226

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 101/236 (42%), Gaps = 46/236 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F +LQGEG H GR A F R +GC++            C +CDT           + 
Sbjct: 7   VVETFHSLQGEGAHVGRSAFFIRLAGCDV-----------GCSWCDTKH-SWNSRNHPQI 54

Query: 66  NVDQLADLIEEQWITGEKEG-RYCVLTGGEPLLQVDVPLIQALNKRG-------FEIAVE 117
            ++QLA    E+  T  K+G  + VLTGGEPL     PL +AL++           I +E
Sbjct: 55  TLEQLA----EETATAAKDGAAFVVLTGGEPLQHNIAPLCEALHRATETNHGGPLAIHLE 110

Query: 118 TNGTIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVN---------------VS 159
           T+G  +      WI +SPK     +   +    ELK+V  + +                 
Sbjct: 111 TSGVNQLSGVPTWITLSPKRHAPPRTDLLAACHELKVVVHETDDLNFAEDMAKAALEARK 170

Query: 160 PENYIGFDFERFSLQPM----DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            +N         S +P+     G        LA  +   +P WRLS+QTHK++GIR
Sbjct: 171 NDNASQSRLSNTSKEPLLFLQPGWKTTRGQQLAFEHVQSHPHWRLSMQTHKWLGIR 226


>gi|22124729|ref|NP_668152.1| hypothetical protein y0816 [Yersinia pestis KIM 10]
 gi|45440171|ref|NP_991710.1| hypothetical protein YP_0312 [Yersinia pestis biovar Microtus str.
           91001]
 gi|51595107|ref|YP_069298.1| coenzyme PQQ synthesis protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108808863|ref|YP_652779.1| hypothetical protein YPA_2872 [Yersinia pestis Antiqua]
 gi|108810883|ref|YP_646650.1| hypothetical protein YPN_0718 [Yersinia pestis Nepal516]
 gi|145600242|ref|YP_001164318.1| hypothetical protein YPDSF_2985 [Yersinia pestis Pestoides F]
 gi|153949574|ref|YP_001402270.1| radical SAM domain-containing protein [Yersinia pseudotuberculosis
           IP 31758]
 gi|153997583|ref|ZP_02022683.1| hypothetical protein YPE_4042 [Yersinia pestis CA88-4125]
 gi|162421287|ref|YP_001605539.1| radical SAM domain-containing protein [Yersinia pestis Angola]
 gi|165925701|ref|ZP_02221533.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936653|ref|ZP_02225220.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166009994|ref|ZP_02230892.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166214107|ref|ZP_02240142.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398407|ref|ZP_02303931.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420659|ref|ZP_02312412.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423406|ref|ZP_02315159.1| radical SAM domain protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167470705|ref|ZP_02335409.1| radical SAM domain protein [Yersinia pestis FV-1]
 gi|170025659|ref|YP_001722164.1| radical SAM domain-containing protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186894119|ref|YP_001871231.1| radical SAM domain-containing protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|218930391|ref|YP_002348266.1| hypothetical protein YPO3374 [Yersinia pestis CO92]
 gi|229839004|ref|ZP_04459163.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229896484|ref|ZP_04511652.1| conserved protein [Yersinia pestis Pestoides A]
 gi|229899572|ref|ZP_04514713.1| conserved protein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229901094|ref|ZP_04516217.1| conserved protein [Yersinia pestis Nepal516]
 gi|270489273|ref|ZP_06206347.1| radical SAM domain protein [Yersinia pestis KIM D27]
 gi|294505081|ref|YP_003569143.1| hypothetical protein YPZ3_2972 [Yersinia pestis Z176003]
 gi|21957546|gb|AAM84403.1|AE013684_5 hypothetical protein y0816 [Yersinia pestis KIM 10]
 gi|45435027|gb|AAS60587.1| Organic radical activating enzymes [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51588389|emb|CAH19997.1| putative coenzyme PQQ synthesis protein, nitrogenase
           iron-molybdenum domain [Yersinia pseudotuberculosis IP
           32953]
 gi|108774531|gb|ABG17050.1| hypothetical protein YPN_0718 [Yersinia pestis Nepal516]
 gi|108780776|gb|ABG14834.1| hypothetical protein YPA_2872 [Yersinia pestis Antiqua]
 gi|115349002|emb|CAL21963.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145211938|gb|ABP41345.1| hypothetical protein YPDSF_2985 [Yersinia pestis Pestoides F]
 gi|149289220|gb|EDM39300.1| hypothetical protein YPE_4042 [Yersinia pestis CA88-4125]
 gi|152961069|gb|ABS48530.1| radical SAM domain protein [Yersinia pseudotuberculosis IP 31758]
 gi|162354102|gb|ABX88050.1| radical SAM domain protein [Yersinia pestis Angola]
 gi|165915302|gb|EDR33912.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165922313|gb|EDR39490.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990901|gb|EDR43202.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166204738|gb|EDR49218.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166961465|gb|EDR57486.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050911|gb|EDR62319.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167057576|gb|EDR67322.1| radical SAM domain protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169752193|gb|ACA69711.1| Radical SAM domain protein [Yersinia pseudotuberculosis YPIII]
 gi|186697145|gb|ACC87774.1| Radical SAM domain protein [Yersinia pseudotuberculosis PB1/+]
 gi|229681819|gb|EEO77912.1| conserved protein [Yersinia pestis Nepal516]
 gi|229687064|gb|EEO79139.1| conserved protein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229695370|gb|EEO85417.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700558|gb|EEO88589.1| conserved protein [Yersinia pestis Pestoides A]
 gi|262363141|gb|ACY59862.1| hypothetical protein YPD4_2958 [Yersinia pestis D106004]
 gi|262367071|gb|ACY63628.1| hypothetical protein YPD8_2956 [Yersinia pestis D182038]
 gi|270337777|gb|EFA48554.1| radical SAM domain protein [Yersinia pestis KIM D27]
 gi|294355540|gb|ADE65881.1| hypothetical protein YPZ3_2972 [Yersinia pestis Z176003]
 gi|320016570|gb|ADW00142.1| conserved protein [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 223

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 105/234 (44%), Gaps = 39/234 (16%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59
           LY I E+F TLQGEG   G  A+F R  GC +   W   +        R  D   + ++ 
Sbjct: 2   LYPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKEADREVDMQRIMVKT 61

Query: 60  TKG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
            +    G  +  QL DL  +Q  T     R+ V+TGGEP +    PL   L + GF   +
Sbjct: 62  AESDAWGSASEQQLLDLFAQQGYT----ARHVVITGGEPSIYDLQPLTSLLEQAGFSCQI 117

Query: 117 ETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE-------------- 161
           ET+GT E       W+ VSPK    + ++GG  LK++   +  + E              
Sbjct: 118 ETSGTHEVRCSAQTWVTVSPK----VNMRGG--LKILSQALQRADEIKHPVGRLRDIEAL 171

Query: 162 ----NYIGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                 +  D +R  +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 172 EALLATLDDDKKRIIALQPISQK--EDATKLCIETCIAK-NWRLSMQTHKYLNI 222


>gi|59800591|ref|YP_207303.1| hypothetical protein NGO0132 [Neisseria gonorrhoeae FA 1090]
 gi|59717486|gb|AAW88891.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
          Length = 335

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 104/228 (45%), Gaps = 48/228 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 136 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 176

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 177 TFGMMSLSDILGR---LKTYAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLK 233

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I+   E+++      V+  + +GF  + ER     
Sbjct: 234 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDAVGFCENMERKIRAH 287

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
            + L P   DG     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 288 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 335


>gi|319952143|ref|YP_004163410.1| radical sam domain protein [Cellulophaga algicola DSM 14237]
 gi|319420803|gb|ADV47912.1| Radical SAM domain protein [Cellulophaga algicola DSM 14237]
          Length = 215

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 97/222 (43%), Gaps = 39/222 (17%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           ++  + E F T+QGEG H G  A F R  GC++            C +CD          
Sbjct: 19  EMLPLMEEFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCDVK-------- 59

Query: 62  GGRYNVDQLADLIEEQWIT-GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
              +N D       E  I+   K     V+TGGEPL     PL + L  R  +  +ET+G
Sbjct: 60  -ESWNADTHPPTATETIISNAAKYSDTIVITGGEPLTWDMGPLTKGLKARNLQTHIETSG 118

Query: 121 TIEPPQGI-DWICVSPKA-----------GCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
              P  G+ DWIC+SPK              +LK+    +   +F +   +  N     +
Sbjct: 119 AY-PLTGVWDWICLSPKKNKLPEGRIYDEAHELKMIIFNKHDFIFAEEQAAKTNKECILY 177

Query: 169 ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               LQP +    ++   L + Y  +NPKW++S+QTHK++ I
Sbjct: 178 ----LQP-EWSVRDKMVPLIVDYVMKNPKWKVSLQTHKYLNI 214


>gi|332160379|ref|YP_004296956.1| hypothetical protein YE105_C0757 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604386|emb|CBY25884.1| queuosine Biosynthesis QueE Radical SAM [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664609|gb|ADZ41253.1| hypothetical protein YE105_C0757 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859861|emb|CBX70192.1| uncharacterized protein ygcF [Yersinia enterocolitica W22703]
          Length = 223

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 105/231 (45%), Gaps = 35/231 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60
           Y I E+F TLQGEG   G  A+F R  GC +   W   +     A  R  D   + ++  
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKAADREVDMQRIMVKTV 62

Query: 61  KG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +    G  +  QL D+  +Q  T     R+ V+TGGEP +   +PL   L + G+   +E
Sbjct: 63  ENDAWGTASEQQLLDIFLQQGYTA----RHVVITGGEPAIYDLLPLTSQLEQAGYSCQIE 118

Query: 118 TNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF---------- 166
           T+GT E       W+ VSPK    + ++GG ++     Q     ++ +G           
Sbjct: 119 TSGTHEVQCSAATWVTVSPK----VNMRGGLKILPQALQRADEIKHPVGRLRDIEALEAL 174

Query: 167 ------DFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                 D +R  +LQP+     EE T L I  C     WRLS+QTHK++ I
Sbjct: 175 LATLADDKKRIIALQPISQK--EEATKLCIETCIAK-NWRLSMQTHKYLNI 222


>gi|304399225|ref|ZP_07381092.1| Radical SAM domain protein [Pantoea sp. aB]
 gi|304353279|gb|EFM17659.1| Radical SAM domain protein [Pantoea sp. aB]
          Length = 223

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 104/236 (44%), Gaps = 43/236 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGRE---QDRLSAQCRFCDTDFVG 56
            Y I E+F TLQGEG + G  A+F R  GC +   W   +   + R   +    D     
Sbjct: 2   FYPINEMFQTLQGEGYYTGVPAIFIRLQGCPVGCSWCDTKHTWEKRTDRETSLGDILIKT 61

Query: 57  IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
           ++    G  +   L + I +Q  T     R+ V+TGGEP +    PL  AL + GF+  +
Sbjct: 62  VESDAWGDADAATLVNAIAQQGWTA----RHVVITGGEPAIYDLRPLTTALEQHGFQCQI 117

Query: 117 ETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER----- 170
           ET+GT E       W+ VSPK    + ++GG +   V PQ  +S  + I     R     
Sbjct: 118 ETSGTHEIHCSEQTWVTVSPK----VNMRGGYD---VLPQA-LSRADEIKHPVARERDVD 169

Query: 171 ----------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                            +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 170 ALDLLLAGIDDTKARIIALQPISRK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|227114089|ref|ZP_03827745.1| hypothetical protein PcarbP_14034 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 223

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 110/229 (48%), Gaps = 31/229 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58
           Y I E+F TLQGEG   G  AVF R  GC +   W   +   D+L+ +    D   V  +
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAVFVRLQGCPVGCSWCDTKHTWDKLAERETSLDQVLVKTE 62

Query: 59  GTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
            +   G  + D +  L+ +Q  T     R+ V+TGGEP +    PL   L K+GF   +E
Sbjct: 63  ESDAWGAASADDILALMVQQGYTA----RHIVITGGEPCIHDLAPLTLQLEKQGFSCQIE 118

Query: 118 TNGTIE---PPQGIDWICVSPKAG-------CDLKIKGGQELKL-VFPQVNVSPENYI-- 164
           T+GT +    P+   W+ VSPK          D  ++   E+K  V  + ++   + +  
Sbjct: 119 TSGTHDVRCSPKT--WVTVSPKVNMRGGMKVLDQALQRADEIKHPVARERDIEALDALLA 176

Query: 165 GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             D ++    +LQP+     ++ T L I+ C     WRLS+QTHK++ I
Sbjct: 177 RLDDDKPRIVALQPISQK--DDATKLCIATCIAR-NWRLSMQTHKYLNI 222


>gi|154149814|ref|YP_001403432.1| radical SAM domain-containing protein [Candidatus Methanoregula
           boonei 6A8]
 gi|153998366|gb|ABS54789.1| Radical SAM domain protein [Methanoregula boonei 6A8]
          Length = 202

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 103/226 (45%), Gaps = 46/226 (20%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGEG   G   +F R +GCNL            CR+CDT +    GT+    
Sbjct: 3   IAEIFKSLQGEGVRQGTPCIFIRLAGCNL-----------ACRWCDTQYARSGGTE---T 48

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE 123
           + D+   ++EE W   ++  R   +TGGEPLLQ DV  PL+ +L+KRG  I +ETNGTI+
Sbjct: 49  SCDK---ILEEIW---KENPRSVCITGGEPLLQTDVLLPLLASLHKRGITIDIETNGTID 102

Query: 124 --PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF----------ERF 171
             P Q    +C+      D+K     E   +     + P + + F            E  
Sbjct: 103 FSPVQPFAAVCM------DVKCPSSGERSDLSLLARIRPTDSVKFVVGDLADCRYAQEVL 156

Query: 172 SLQPMDG-----PFLEENTNLAISYCFQNP-KWRLSVQTHKFIGIR 211
           +   + G     P    + +  + +   N    R  +Q HK +G++
Sbjct: 157 ARHAIAGECFLSPVYGTDCDTIVRFILDNNLPVRFQLQLHKILGVK 202


>gi|167623866|ref|YP_001674160.1| radical SAM domain-containing protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167353888|gb|ABZ76501.1| Radical SAM domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 222

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 110/232 (47%), Gaps = 38/232 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFV-GIQG 59
           Y + E+F T+QGEG   G  AVF R  GC +   W   +Q     +      + V  + G
Sbjct: 3   YPVNEVFETIQGEGTFTGVPAVFVRLQGCPVGCSWCDTKQTWELLEANHVAKELVIQVDG 62

Query: 60  TKGGRYNVDQLADLIEEQWITGEKE----GRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
           T G      + ++L  E+ +   K+     ++ V+TGGEP L     L Q L+ +G++  
Sbjct: 63  TIG------RWSELSAEELVNAFKDKGFNAKHIVITGGEPCLYDLTELTQYLHSQGYQTQ 116

Query: 116 VETNGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENYI---- 164
           +ET+GT +     D W+ VSPK    + +KGG + L     + N     ++ +N+I    
Sbjct: 117 IETSGTFDVLCHADTWVTVSPK----VNMKGGYKVLAQALNRANEIKHPIATQNHIDELD 172

Query: 165 ----GFDF--ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               G D   +   LQP+        T LA+S C     WRLS+QTHK++ I
Sbjct: 173 ELLEGIDLTDKTVCLQPISQK--ARATELAMSTCIAR-NWRLSIQTHKYLDI 221


>gi|303250156|ref|ZP_07336358.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252734|ref|ZP_07534625.1| hypothetical protein appser6_12480 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302651219|gb|EFL81373.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859766|gb|EFM91788.1| hypothetical protein appser6_12480 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 210

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 100/222 (45%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + I EIF +LQGEG + G   +F R   CNL            C +CDT++         
Sbjct: 11  FPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY--------N 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            Y    +A ++E          +  ++TGGEP +  ++  L+      G+ +A+ETNG  
Sbjct: 52  EYEKWSVAKILER---VKSYSAKNIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNGLK 108

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSP-----ENYIGFDFERFS 172
             P+ ID+I  SPK     K     I    E+++V  + +V       E  I  +    S
Sbjct: 109 AVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVMDKGDVQSFCEQIETQITAEHYYLS 168

Query: 173 LQPMDGP--FLEENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211
              +DG    LE  T L I +     PKW+LS+QTHK +GI 
Sbjct: 169 PCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGIE 210


>gi|241759459|ref|ZP_04757563.1| NrdG protein [Neisseria flavescens SK114]
 gi|241320241|gb|EER56574.1| NrdG protein [Neisseria flavescens SK114]
          Length = 211

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 100/221 (45%), Gaps = 36/221 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 12  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 52

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           ++ +  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 53  KFGMMSLSDILGR---LKTYTARNVIITGGEPTIQPHLNTLLDALKAEGYFLCIETNGLN 109

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVF--PQVNVSPENYIGFDFERFSLQP 175
             P  ID++  SPKA    K     I+   E+++V     V    E       + + L P
Sbjct: 110 PAPPQIDYVATSPKACYAAKYESSCIEKADEVRIVADGDVVAFCQEMERKIRAQHYYLSP 169

Query: 176 --MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
              DG     +T   I      P     W+LSVQTHK+ GI
Sbjct: 170 CEQDGVMNIYDTIRQIGVLNSRPDAPVHWQLSVQTHKWAGI 210


>gi|146304722|ref|YP_001192038.1| radical SAM domain-containing protein [Metallosphaera sedula DSM
           5348]
 gi|145702972|gb|ABP96114.1| Radical SAM domain protein [Metallosphaera sedula DSM 5348]
          Length = 210

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 111/230 (48%), Gaps = 44/230 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF ++QGEG   G+ + F R +GCNL           +C +CDT F  I+     
Sbjct: 3   YWIVEIFTSIQGEGLVIGKPSNFVRLAGCNL-----------RCVWCDTKFSWIRE---- 47

Query: 64  RYNVDQLADLIEEQWITGE--KEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
               D +   +EE  ITG+  +  ++  +TGGEPLLQ  +PL   L   G+ +AVETNGT
Sbjct: 48  ----DGVPMELEE--ITGKLSRSVKWTTITGGEPLLQDILPLASTLKNLGYNVAVETNGT 101

Query: 122 IEPPQG----IDWICVSPK---AGCDLKIKGGQELKLVFPQVNVSP-------ENYI--- 164
           I+P Q     +D   VSPK   +G  L+    ++    +  V V P       +N++   
Sbjct: 102 IKPKQELRKIVDVFSVSPKLSNSGHKLRYDFSEDWATYYKFVIVEPNRDLREVKNFVEEH 161

Query: 165 GFDFERFSLQPMDG---PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             D E+  +QP DG    +++    L+ +       +R+  Q H+ I  R
Sbjct: 162 RIDPEKVIVQP-DGNRQDYIQALKELSDAVMELGLPFRVLPQLHRIISYR 210


>gi|90414517|ref|ZP_01222492.1| putative organic radical activating enzyme [Photobacterium
           profundum 3TCK]
 gi|90324425|gb|EAS40987.1| putative organic radical activating enzyme [Photobacterium
           profundum 3TCK]
          Length = 222

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 109/232 (46%), Gaps = 35/232 (15%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCD-TDFVGIQ 58
           +Y I E+F T+QGEG   G  A+F R   C +   W   +Q   +    +    D +  +
Sbjct: 1   MYKINEVFETIQGEGTFTGVPAIFVRLQVCPVGCSWCDTKQTWDAEPTDYASLNDIMAKK 60

Query: 59  GTKGGRYNVDQ--LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
           G      N+D   +  L+++Q  T     R+ V+TGGEP +   +PL  AL   GF   +
Sbjct: 61  GDSPLWTNIDAQGIVALLQDQGYTA----RHVVITGGEPCIYDLIPLTAALETAGFNCQI 116

Query: 117 ETNGTIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNVSPE--NYIGF--DFERF 171
           ET+GT E     D W+ VSP      KI    +L ++   ++ + E  + +G   D E+ 
Sbjct: 117 ETSGTSEILATEDTWVTVSP------KINMKAKLPVLASALSRADEIKHPVGTSKDIEQL 170

Query: 172 SLQPMDGPFLEENTNLAISYCFQNPK-------------WRLSVQTHKFIGI 210
               ++G  L++N  +A+    Q P+             WRLS+QTHK++ I
Sbjct: 171 DTL-INGVTLKQNVTIALQPISQKPRATDLCIETCIKRNWRLSIQTHKYLAI 221


>gi|253988156|ref|YP_003039512.1| hypothetical protein PAU_00675 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779606|emb|CAQ82767.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 223

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 106/236 (44%), Gaps = 43/236 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDT 52
            Y I EIF TLQGEG   G  A+F R  GC          + W  + + +   +     T
Sbjct: 2   FYPINEIFQTLQGEGFFTGVPAIFIRLQGCPVGCSWCDTKHTWEKKAEKQQMLETILLKT 61

Query: 53  DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF 112
           +    +  + G  +  Q+A L  +Q  T     R+ V+TGGEP +   +PL + L   G+
Sbjct: 62  N----ESDEWGEASPKQIATLFVQQGYTA----RHVVITGGEPCIYDLIPLTEELENLGY 113

Query: 113 EIAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGG-QELKLVFPQVN-----VSPENYIG 165
           +  +ET+GT         W+ VSPK    +K++GG Q L+    + N     V+ E  I 
Sbjct: 114 QCQIETSGTYHVECSAATWVTVSPK----VKMRGGYQVLQQALQRANEIKHPVARERDIE 169

Query: 166 FDFERF-----------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              E             +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 170 ALDELLATLDNNSSRIIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|307257150|ref|ZP_07538922.1| hypothetical protein appser10_11500 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864312|gb|EFM96223.1| hypothetical protein appser10_11500 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 210

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 100/222 (45%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + I EIF +LQGEG + G   +F R   CNL            C +CDT++         
Sbjct: 11  FPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY--------N 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            Y    +A ++E          +  ++TGGEP +  ++  L+      G+ +A+ETNG  
Sbjct: 52  EYEKWSVAKILER---VKSYSAKNIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNGLK 108

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSP-----ENYIGFDFERFS 172
             P+ ID+I  SPK     K     I    E+++V  + +V       E  I  +    S
Sbjct: 109 AVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVMDKGDVQSFCEQIETQITAEHYYLS 168

Query: 173 LQPMDGP--FLEENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211
              +DG    LE  T L I +     PKW+LS+QTHK +GI 
Sbjct: 169 PCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGIE 210


>gi|332042673|gb|EGI78873.1| Radical SAM domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 209

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 95/225 (42%), Gaps = 45/225 (20%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           K+  + E F T+QGEG H G  A F R  GC++            C +CD     I    
Sbjct: 13  KMLPLMEEFYTIQGEGFHKGTAAYFVRIGGCDV-----------GCHWCDVKESWIA--- 58

Query: 62  GGRYNVDQLADLIEEQWITGEKE--GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
                  QL    E + I    +   +  V+TGGEPL      L + L   G  I +ET+
Sbjct: 59  -------QLHPPTETEKIVANAKQYSKTIVVTGGEPLTWDMTELTKQLKAEGMNIHIETS 111

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKG----GQELKLVFPQVNVSPENYIGFDFERFSLQP 175
           G  E     DWIC+SPK    L  +G      ELK +         N   F F     + 
Sbjct: 112 GAYELTGEWDWICLSPKK-MKLPTQGVYDKANELKCII-------YNKDDFRFAEEQAEK 163

Query: 176 MDGPFL----------EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           ++G  +          ++   + + Y  +NPKW++S+QTHK++ I
Sbjct: 164 VNGDCILYLQPEWSKRDKVVPMIVDYVMENPKWKVSLQTHKYLNI 208


>gi|117920607|ref|YP_869799.1| radical activating enzyme [Shewanella sp. ANA-3]
 gi|117612939|gb|ABK48393.1| radical activating enzyme [Shewanella sp. ANA-3]
          Length = 222

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 103/230 (44%), Gaps = 34/230 (14%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQD-RLSAQCRFCDTDFVGIQG 59
           Y + E+F T+QGEG   G  A+F R  GC +   W   +Q   L  + +      + + G
Sbjct: 3   YPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDLLEEKKVSPEQVITVDG 62

Query: 60  TKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           + G    +    L D    +  T     R+ V+TGGEP +     L   L+  GF   +E
Sbjct: 63  SVGRWANHTAQSLIDAFNAKGYT----ARHVVITGGEPCMYDLNELTHTLHAAGFATQIE 118

Query: 118 TNGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENYI------ 164
           T+GT E     D W+ VSPK    + +KGG + L     + N     ++ EN+I      
Sbjct: 119 TSGTFEVKCDADTWVTVSPK----INMKGGYKVLAQALIRANEIKHPIATENHIDELDEL 174

Query: 165 --GFDF--ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             G D   +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 175 LKGIDVSAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221


>gi|325287093|ref|YP_004262883.1| Radical SAM domain-containing protein [Cellulophaga lytica DSM
           7489]
 gi|324322547|gb|ADY30012.1| Radical SAM domain protein [Cellulophaga lytica DSM 7489]
          Length = 215

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 97/221 (43%), Gaps = 37/221 (16%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           ++  + E F T+QGEG H G  A F R  GC++            C +CD        T 
Sbjct: 19  EMLPLMEEFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCDVKESWNAATH 67

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
                +D + +          K     V+TGGEPL     PL +AL  +  +  +ET+G 
Sbjct: 68  PPT-TIDAIVN-------NAAKYSNTIVVTGGEPLTWNMAPLTEALKAKNLQTHIETSGA 119

Query: 122 IEPPQGIDWICVSPKAGC---DLKIKGGQELKLVFPQVNVSPENYIGFDFERFS------ 172
                  DWIC+SPK       +      ELK++     +  +N   F  E+ +      
Sbjct: 120 YTLTGIWDWICLSPKKNKLPQGIIYDKADELKMI-----IYNKNDFKFAEEQAAKVNKDC 174

Query: 173 ---LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              LQP +    ++ T L + +  +NP+W++S+QTHK++ I
Sbjct: 175 ILYLQP-EWSVKDKMTPLIVDFVMKNPQWKVSLQTHKYLNI 214


>gi|327405865|ref|YP_004346703.1| Radical SAM domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327321373|gb|AEA45865.1| Radical SAM domain protein [Fluviicola taffensis DSM 16823]
          Length = 204

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 99/214 (46%), Gaps = 26/214 (12%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y + E F T+QGEG + G  A F R  GC++            C +CD            
Sbjct: 9   YPVMEHFYTIQGEGKYTGTSAYFIRLGGCDV-----------GCVWCDVK-ESWDADIHP 56

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           +  VD+L  ++       +  G   V+TGGEP +     L+ AL+  G  +A+ET+GT  
Sbjct: 57  KMTVDELITVV------AQYPGELVVITGGEPAMYDLSVLVDALHSIGKYVAIETSGTSP 110

Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELKLV-FPQVNV--SPENYIGF-DFERFSLQPM 176
               +DW   SP   K+  D       ELK+V F Q ++  + E+ +   D     LQP 
Sbjct: 111 LVGAVDWYTFSPKKFKSPVDEAYNKASELKIVIFHQSDLKWAEEHSLKVNDACVLYLQP- 169

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    E+     I Y   +PKW++S+QTHK++ I
Sbjct: 170 EWSKREQLLPTIIEYVKNHPKWKISLQTHKYLEI 203


>gi|251792175|ref|YP_003006895.1| NrdG protein [Aggregatibacter aphrophilus NJ8700]
 gi|247533562|gb|ACS96808.1| NrdG protein [Aggregatibacter aphrophilus NJ8700]
          Length = 209

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 107/224 (47%), Gaps = 43/224 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y+I EIF +LQGEG + G  ++F RF  CNL            C +CDT++         
Sbjct: 11  YNIVEIFESLQGEGFNTGMPSIFVRFGKCNL-----------ACPWCDTNY--------N 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           ++    LA ++EE         +  ++TGGEP +  ++  L+  +   G+ +A+ETNG  
Sbjct: 52  QFERMTLAQIMEE---VRSFSAKNIIITGGEPTIVPNIELLLNQMKSEGYFLAIETNGLK 108

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS------PENYIGFDFERF 171
             P  ID+I  SPK     K     I+   E+++V    +VS       EN       R+
Sbjct: 109 PIPTQIDYIATSPKRLYQHKYEQRCIEFADEVRIV-ADGDVSDFCALIEEN---IQATRY 164

Query: 172 SLQP--MDGP--FLEENTNLAISYCFQN-PKWRLSVQTHKFIGI 210
            L P  ++G    LE  T L +     N PKW LSVQTHK IGI
Sbjct: 165 YLSPCEINGKMNLLETITQLGLLNQRPNKPKWLLSVQTHKLIGI 208


>gi|119774960|ref|YP_927700.1| radical activating enzyme [Shewanella amazonensis SB2B]
 gi|119767460|gb|ABM00031.1| radical activating enzyme [Shewanella amazonensis SB2B]
          Length = 233

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 102/233 (43%), Gaps = 34/233 (14%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQD-RLSAQCRFCDTDFVG 56
           M  Y I E+F T+QGEG H G  A+F R  GC +   W    Q   +  Q +    D + 
Sbjct: 11  MTEYPINEVFETIQGEGSHTGLPAIFVRLQGCPVACPWCDTAQTWDVLEQSKVAPADVIQ 70

Query: 57  IQGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
           + G+ G    ++   L     ++  T     +  V+TGGEP +     L Q     GF  
Sbjct: 71  VDGSIGRWAMHSASSLVAAFNQKGFT----AKLVVITGGEPCMHDLTDLTQGFEAEGFHC 126

Query: 115 AVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENYI--- 164
            +ET+GT E       ++ VSPK    + +KGG   LK    + N     V+ + +I   
Sbjct: 127 QIETSGTFEVHCSDRTYVTVSPK----INMKGGYPVLKQALVRANEIKHPVATDAHIDEL 182

Query: 165 -----GFDF--ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                G D   +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 183 DALLEGIDTSGKTICLQPISQK--PRATELAMKTCIAR-NWRLSIQTHKYLNI 232


>gi|322514966|ref|ZP_08067979.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Actinobacillus ureae ATCC 25976]
 gi|322119074|gb|EFX91234.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Actinobacillus ureae ATCC 25976]
          Length = 210

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 104/220 (47%), Gaps = 36/220 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGEG + G   +F R   CNL            C +CDT++      +  ++
Sbjct: 13  IVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY-----NEYEKW 56

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124
           NV ++ + ++          +  ++TGGEP +  ++  L+      G+ +A+ETNG    
Sbjct: 57  NVAKILERVKSY------SAKNIIITGGEPTMYANLSVLLDVFKVEGYWLAIETNGLKAV 110

Query: 125 PQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS---PENYIGFDFERFSLQP- 175
           P+ ID+I  SPK     K     I    E+++V  + +V     +       E + L P 
Sbjct: 111 PKQIDYIATSPKLMYQEKYLRECIPFANEVRIVMDKGDVQGFCEQIETQITAEHYYLSPC 170

Query: 176 -MDGP--FLEENTNLAISYCFQN-PKWRLSVQTHKFIGIR 211
            +DG    LE  T L I     N PKW+LS+QTHK +GI 
Sbjct: 171 EVDGKMNLLETITQLGILNQRANKPKWQLSLQTHKLVGIE 210


>gi|260772755|ref|ZP_05881671.1| queuosine Biosynthesis QueE Radical SAM [Vibrio metschnikovii CIP
           69.14]
 gi|260611894|gb|EEX37097.1| queuosine Biosynthesis QueE Radical SAM [Vibrio metschnikovii CIP
           69.14]
          Length = 224

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 103/243 (42%), Gaps = 53/243 (21%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL----------WSGREQDRLSAQCRFC 50
           M LY + EIF T+QGEG   G  AVF R   C +          W    QD+ S +    
Sbjct: 1   MTLYKVNEIFETIQGEGVFTGVPAVFVRLQQCPVGCAWCDTKQTWDAEPQDQRSFE---- 56

Query: 51  DTDFVGIQGTKGG--RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
               +  QG      + + +Q+    ++Q  T     ++ V+TGGEP L   VPL +A  
Sbjct: 57  --QIIVKQGDSPTWCQGSAEQIVAQYQQQGYTA----KHIVITGGEPCLYDLVPLTEAFE 110

Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKI--------------------KGGQ 147
             G +  +ET+GT E       W+ VSPK     K+                    K   
Sbjct: 111 AIGCQCQIETSGTFEIKASAKTWVTVSPKIAMKGKLPIVPSALQRANEIKHPVGTEKDIA 170

Query: 148 ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
           +L+ +  QV +SP+  I       +LQP+        T L I  C     WRLS+QTHK+
Sbjct: 171 QLEALLAQVAISPDTII-------ALQPISQK--PRATQLCIETCITR-NWRLSIQTHKY 220

Query: 208 IGI 210
           + I
Sbjct: 221 LNI 223


>gi|239948218|ref|ZP_04699971.1| queuosine biosynthesis protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922494|gb|EER22518.1| queuosine biosynthesis protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 225

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 105/229 (45%), Gaps = 48/229 (20%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           ++ IF T+QGEG   G  A+F R  GCNL            C FCDT+F           
Sbjct: 20  VQSIFKTIQGEGIFVGCPAIFIRLGGCNLA-----------CNFCDTEFEDFD-----LV 63

Query: 66  NVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122
           ++D++ + +E   +    EK     V+TGGEP+ Q    L   L    F++ +ETNGT+ 
Sbjct: 64  DIDKILNKVEILALNSKNEKSINLVVITGGEPMRQPIELLCHKLLDLDFKVQIETNGTLY 123

Query: 123 -EPPQGIDWICVSPKAGCD--LKIKGGQELKL---------------VFPQVNVSPENYI 164
              P+G+  IC SPKAG     KI+     K+               + P+V  +  N  
Sbjct: 124 RSLPKGVSIIC-SPKAGKTGYSKIRENLLPKISAVKFIVAKNILEYSIIPEVGQTSYNIP 182

Query: 165 GFDFERFSLQPMDGP---FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            F      +QPMD       +EN  LA+    ++   RLS+QTHKF+ I
Sbjct: 183 VF------IQPMDQNNQRLNDENNELAVKLALES-GARLSLQTHKFLNI 224


>gi|88809463|ref|ZP_01124971.1| possible organic radical activating enzyme [Synechococcus sp. WH
           7805]
 gi|88786682|gb|EAR17841.1| possible organic radical activating enzyme [Synechococcus sp. WH
           7805]
          Length = 208

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 100/218 (45%), Gaps = 34/218 (15%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F +LQGEG HAGR A F R +GC +            C +CDT            +
Sbjct: 13  VVETFHSLQGEGLHAGRSAFFIRLAGCRV-----------GCSWCDTK----HSWPADSH 57

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-RGFEIAVETNGTIEP 124
            +  +  L  E          + V+TGGEPL      L QAL   R   + +ET+G ++P
Sbjct: 58  PLRPIDSLATEAAAAASDGAAFVVITGGEPLHHNLDALAQALRSLRSLPLHLETSG-VDP 116

Query: 125 PQG-IDWICVSPKAGCDLK---IKGGQELKLVFPQVNVSPENYIGFDF-------ERFSL 173
             G  DWI +SPK     +   ++   ELK+V  +    P + +  D          + L
Sbjct: 117 LSGDPDWITLSPKRHAPPRAELLRRCHELKVVVHE----PADLLFADVVAAQAPQATWLL 172

Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           QP  G    E   LA+    ++ +WRLS+Q+HK++G+R
Sbjct: 173 QP--GWESAEGQQLALDAARRDGRWRLSLQSHKWLGVR 208


>gi|322369255|ref|ZP_08043820.1| hypothetical protein ZOD2009_07199 [Haladaptatus paucihalophilus
           DX253]
 gi|320550987|gb|EFW92636.1| hypothetical protein ZOD2009_07199 [Haladaptatus paucihalophilus
           DX253]
          Length = 264

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 70/132 (53%), Gaps = 19/132 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F +LQGEG  AG  +VF R SGCNL           +C FCD+     + T   R 
Sbjct: 30  INELFYSLQGEGTLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPTH-ARM 77

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            VD++   +E        +  + VLTGGEPL+  + V L+  L++RG+   VETNGTI  
Sbjct: 78  TVDEIVAEVESY------DANHIVLTGGEPLVHEESVTLLDRLSERGYHTTVETNGTIFR 131

Query: 125 PQGIDWICVSPK 136
              ID   VSPK
Sbjct: 132 DAPIDLASVSPK 143


>gi|242238307|ref|YP_002986488.1| hypothetical protein Dd703_0856 [Dickeya dadantii Ech703]
 gi|242130364|gb|ACS84666.1| conserved hypothetical protein [Dickeya dadantii Ech703]
          Length = 224

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 104/241 (43%), Gaps = 49/241 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y I E+F TLQGEG   G  AVF R  GC +            C +CDT     +  
Sbjct: 1   MPQYPINEMFQTLQGEGYFTGVPAVFIRLQGCPV-----------GCSWCDTKHTWEKLA 49

Query: 61  KGGRYNVDQLADLIEEQ-W--------ITGEKE----GRYCVLTGGEPLLQVDVPLIQAL 107
           +      + LA   E   W        ++  +E     R+ V+TGGEP +    PL  AL
Sbjct: 50  ERQSSLAEVLAKTAESDVWGAADATEILSSMRELGYTARHVVITGGEPCIHDLTPLTLAL 109

Query: 108 NKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQ----------- 155
            ++GF   +ET+GT +       W+ VSPK    + ++GG  + L   Q           
Sbjct: 110 EQQGFSTQIETSGTHDVRCSPATWVTVSPK----VNMRGGMAVLLSALQRADEIKHPVAR 165

Query: 156 ---VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
              V+         D ++    +LQP+     EE T L I+ C     WRLS+QTHK++ 
Sbjct: 166 ERDVDALDALLARLDDDKSRVVALQPVSQK--EEATRLCIATCIAR-NWRLSMQTHKYLN 222

Query: 210 I 210
           I
Sbjct: 223 I 223


>gi|225077247|ref|ZP_03720446.1| hypothetical protein NEIFLAOT_02302 [Neisseria flavescens
           NRL30031/H210]
 gi|224951391|gb|EEG32600.1| hypothetical protein NEIFLAOT_02302 [Neisseria flavescens
           NRL30031/H210]
          Length = 211

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 100/221 (45%), Gaps = 36/221 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 12  YRIVEIFESLQGEGWNTGMPAVFIRLGKCNL-----------ACSWCDTDYL-------- 52

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           ++ +  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 53  KFGMMSLSDILGR---LKTYTARNIIITGGEPTIQPHLDTLLNALKTEGYFLCIETNGLN 109

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVF--PQVNVSPENYIGFDFERFSLQP 175
             P  ID++  SPKA    K     I+   E+++V     +    E       + + L P
Sbjct: 110 PAPPQIDYVATSPKACYVAKYEFSCIEKADEVRIVADGDVIAFCQEMERKIRAQHYYLSP 169

Query: 176 --MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
              DG     +T   I      P     W+LSVQTHK+ GI
Sbjct: 170 CEQDGVMNIYDTIRQIGVLNSRPDAPVHWQLSVQTHKWAGI 210


>gi|32035298|ref|ZP_00135305.1| COG0602: Organic radical activating enzymes [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208571|ref|YP_001053796.1| hypothetical protein APL_1099 [Actinobacillus pleuropneumoniae L20]
 gi|190150424|ref|YP_001968949.1| hypothetical protein APP7_1155 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303253329|ref|ZP_07339478.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307246015|ref|ZP_07528097.1| hypothetical protein appser1_12160 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307248119|ref|ZP_07530147.1| hypothetical protein appser2_11000 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307250350|ref|ZP_07532299.1| hypothetical protein appser4_11310 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307254996|ref|ZP_07536814.1| hypothetical protein appser9_12300 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259432|ref|ZP_07541157.1| hypothetical protein appser11_12290 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307263767|ref|ZP_07545373.1| hypothetical protein appser13_11780 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126097363|gb|ABN74191.1| hypothetical protein APL_1099 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|189915555|gb|ACE61807.1| hypothetical protein APP7_1155 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302648011|gb|EFL78218.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306852950|gb|EFM85173.1| hypothetical protein appser1_12160 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306855296|gb|EFM87471.1| hypothetical protein appser2_11000 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306857625|gb|EFM89732.1| hypothetical protein appser4_11310 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306861869|gb|EFM93845.1| hypothetical protein appser9_12300 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866368|gb|EFM98231.1| hypothetical protein appser11_12290 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306870888|gb|EFN02626.1| hypothetical protein appser13_11780 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 210

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 100/222 (45%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + I EIF +LQGEG + G   +F R   CNL            C +CDT++         
Sbjct: 11  FPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY--------N 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            Y    +A ++E          +  ++TGGEP +  ++  L+      G+ +A+ETNG  
Sbjct: 52  EYEKWSVAKILER---VKSYSAKNIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNGLK 108

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSP-----ENYIGFDFERFS 172
             P+ ID+I  SPK     K     I    E+++V  + +V       E  I  +    S
Sbjct: 109 AVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVVDKGDVQSFCEQIETQITAEHYYLS 168

Query: 173 LQPMDGP--FLEENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211
              +DG    LE  T L I +     PKW+LS+QTHK +GI 
Sbjct: 169 PCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGIE 210


>gi|329119485|ref|ZP_08248170.1| radical SAM domain protein [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464418|gb|EGF10718.1| radical SAM domain protein [Neisseria bacilliformis ATCC BAA-1200]
          Length = 212

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 101/221 (45%), Gaps = 36/221 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  A+F R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAIFVRLGKCNL-----------ACSWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           ++++  L++++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 54  KFSMMPLSEILGR---LKNYTARNIIITGGEPTIQPHLNTLLDALKNAGYRLCIETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175
             P  ID++  SPKA    K     I    E+++V     +S    +       R+ L P
Sbjct: 111 PAPPQIDYVAASPKACYAAKYEKSCIAAADEVRIVADGDVISFCEALEQKIRARRYYLSP 170

Query: 176 --MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
              +G     +T   I      P     W+LSVQTHK+ GI
Sbjct: 171 CEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211


>gi|123967114|ref|YP_001012195.1| putative organic radical activating protein [Prochlorococcus
           marinus str. MIT 9515]
 gi|123201480|gb|ABM73088.1| possible organic radical activating enzyme [Prochlorococcus marinus
           str. MIT 9515]
          Length = 223

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 105/236 (44%), Gaps = 53/236 (22%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           E F +LQGEG H G+ A F R +GCN+            C +CDT           ++ +
Sbjct: 9   EKFHSLQGEGFHTGQSAFFIRLAGCNV-----------GCPWCDTK----HSWDKEKFPL 53

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG-------FEIAVETNG 120
             + ++I E     ++   + V+TGGEPL      L QA+N+          +I +ET+G
Sbjct: 54  ISIQEIINEIKRARKQGASFLVITGGEPLHHNLDNLCQAINEETSTENQSPIKIHIETSG 113

Query: 121 TIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFP-------------------QVNV 158
                   DWI +SPK     K   +K   ELK++                     Q + 
Sbjct: 114 VSNLSGSFDWITLSPKRHQPPKTYFLKNCNELKIIINDQKDIDFAIDIKQEIMNKYQNSS 173

Query: 159 SPENYIGFDFERFSLQPM---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           S +N+   D +++ LQP    D  F     +L I +   NP+W LS+QTHK++ I+
Sbjct: 174 STKNFYKLD-KKYYLQPAWQNDDGF-----SLTIDFIKNNPEWNLSLQTHKYLKIK 223


>gi|270264011|ref|ZP_06192279.1| hypothetical protein SOD_f02250 [Serratia odorifera 4Rx13]
 gi|270042204|gb|EFA15300.1| hypothetical protein SOD_f02250 [Serratia odorifera 4Rx13]
          Length = 223

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 104/233 (44%), Gaps = 39/233 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60
           Y I E+F TLQGEG   G  A+F R  GC +   W   +        R  D   + ++  
Sbjct: 3   YPINEMFQTLQGEGFFTGVPAIFIRLQGCPVGCSWCDTKHTWEKEANREVDMQRILVKTE 62

Query: 61  KG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +    G  + +QL  ++ +Q  T     R+ V+TGGEP +    PL Q L + G+   +E
Sbjct: 63  ESDAWGSASAEQLLAVMRQQGYTA----RHVVITGGEPCIYDLTPLTQLLEENGYGCQIE 118

Query: 118 TNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER------ 170
           T+GT E       W+ VSPK    + ++GG  +K++   +  + E       ER      
Sbjct: 119 TSGTHEIQCSATTWVTVSPK----VNMRGG--MKVLDQALQRADEVKHPVGRERDIEALD 172

Query: 171 -------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                         +LQP+     EE T L I  C     WRLS+QTHK++ I
Sbjct: 173 ALLATLHDEKPRIIALQPISQK--EEATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|240114982|ref|ZP_04729044.1| hypothetical protein NgonPID1_01797 [Neisseria gonorrhoeae PID18]
 gi|260441203|ref|ZP_05795019.1| hypothetical protein NgonDG_08991 [Neisseria gonorrhoeae DGI2]
 gi|268600650|ref|ZP_06134817.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268584781|gb|EEZ49457.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
          Length = 212

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 104/227 (45%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++    I      R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 54  TFGMMSLSDILGRLKIYA---ARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I+   E+++      V+  + +GF  + ER     
Sbjct: 111 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDVVGFCENMERKIRAH 164

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
            + L P   DG     +T   I      P     W+LSVQTHK+ GI
Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211


>gi|197122965|ref|YP_002134916.1| radical SAM protein [Anaeromyxobacter sp. K]
 gi|196172814|gb|ACG73787.1| Radical SAM domain protein [Anaeromyxobacter sp. K]
          Length = 210

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 104/229 (45%), Gaps = 55/229 (24%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF ++QGEG  AGR  VF RF+GC+L           +C +CDT +    G      
Sbjct: 3   VTEIFFSIQGEGSRAGRPCVFVRFTGCDL-----------RCGYCDTAYAFHGGA----- 46

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124
           ++D+ A L E          R+  LTGGEP+LQ ++P L + L  RG+E+AVET+G    
Sbjct: 47  DMDRAAILAE----VARHPARFVCLTGGEPMLQRELPDLARDLVARGYEVAVETHGQ--- 99

Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENYIGF-----DFERFSLQPMDG 178
            + +D +        D+K  G  E+   F  ++ + P + + F     D  R+S + +  
Sbjct: 100 -RPLDALPAEAIRVVDVKTPGSGEVTTDFAYLDRLQPHDEVKFVVCSEDDFRWSREVVRR 158

Query: 179 PFLEENTNLAISYCFQNPKW-------------------RLSVQTHKFI 208
             LE    + +S     P W                   RLS+Q HK I
Sbjct: 159 HALEGRVQVLLS-----PAWGQVAPRDLVRWMLESGLDARLSLQVHKVI 202


>gi|238761644|ref|ZP_04622619.1| hypothetical protein ykris0001_11220 [Yersinia kristensenii ATCC
           33638]
 gi|238700158|gb|EEP92900.1| hypothetical protein ykris0001_11220 [Yersinia kristensenii ATCC
           33638]
          Length = 223

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 103/234 (44%), Gaps = 41/234 (17%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60
           Y I E+F TLQGEG   G  A+F R  GC +   W   +        R  D   + ++  
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKEADREVDMQRIMVKTA 62

Query: 61  KG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +    G  +  QL D+  +Q  T     R+ V+TGGEP +   +PL   L + G+   +E
Sbjct: 63  ESDLWGTASEQQLLDIFRQQGYTA----RHVVITGGEPAIYDLLPLTSQLEQAGYSCQIE 118

Query: 118 TNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY------------- 163
           T+GT E       W+ VSPK    + ++GG +   V PQ     +               
Sbjct: 119 TSGTHEVQCSATTWVTVSPK----VNMRGGLK---VLPQALQRADEIKHPVGRLRDIEAL 171

Query: 164 ------IGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                 +  D +R  +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 172 EVLLVTLTDDKKRIIALQPISQK--EDATKLCIETCIAK-NWRLSMQTHKYLNI 222


>gi|293397670|ref|ZP_06641876.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
 gi|291611616|gb|EFF40685.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
          Length = 241

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 104/227 (45%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 42  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 82

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 83  TFGMMSLSDILGR---LKTYAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLK 139

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I+   E+++      V+  + +GF  + ER     
Sbjct: 140 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDAVGFCENMERKIRAH 193

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
            + L P   DG     +T   I      P     W+LSVQTHK+ GI
Sbjct: 194 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 240


>gi|251788459|ref|YP_003003180.1| hypothetical protein Dd1591_0822 [Dickeya zeae Ech1591]
 gi|247537080|gb|ACT05701.1| conserved hypothetical protein [Dickeya zeae Ech1591]
          Length = 223

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 108/235 (45%), Gaps = 43/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54
           Y I E+F TLQGEG   G  AVF R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGFFTGVPAVFIRLQGCPV-----------GCSWCDTKHTWERLPDRQ 51

Query: 55  -----VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
                + ++  +   ++     +L+++  + G    ++ V+TGGEP +    PL QAL +
Sbjct: 52  IPLADILVKSGESDAWSHSSSEELLQQMRLQG-YSAKHIVITGGEPCIHDLTPLTQALEQ 110

Query: 110 RGFEIAVETNGTIEPP-QGIDWICVSPK-------AGCDLKIKGGQELKL-VFPQVNVSP 160
           +GF   +ET+GT E       W+ VSPK       A  D  ++   E+K  V  + ++  
Sbjct: 111 QGFSTQIETSGTHEVRCSSACWVTVSPKVNMRGGLAVLDQALRRADEIKHPVARERDIEA 170

Query: 161 ENYI--GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + +    D ++    +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 171 LDALLARLDDDKPRVVALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|329295553|ref|ZP_08252889.1| Radical SAM domain-containing protein [Plautia stali symbiont]
          Length = 223

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 105/235 (44%), Gaps = 41/235 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGRE---QDRLSAQCRFCDTDFVG 56
            Y I E+F TLQGEG + G  A+F R  GC +   W   +   + R   +    D     
Sbjct: 2   FYPINEMFQTLQGEGFYTGVPAIFIRLQGCPVGCSWCDTKHTWETRADLETSLGDILVKT 61

Query: 57  IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
           ++    G  +   L + I+ Q  T     R+ V+TGGEP +    PL +AL   GF+  +
Sbjct: 62  VESDAWGSADAATLIETIQRQGWTA----RHLVITGGEPAIFDLRPLTEALETAGFQCQI 117

Query: 117 ETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQV---------NVSPENYI-- 164
           ET+GT E       W+ VSPK    + ++GG +   V PQ           V+ E  +  
Sbjct: 118 ETSGTHEVHCSAATWVTVSPK----VNMRGGYD---VLPQALQRADEIKHPVARERDVEA 170

Query: 165 ------GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                 G   E+    +LQP+     E  T L I  C     WRLS+QTHK++ I
Sbjct: 171 LDALLAGLQDEKKRIVALQPISRG--EAATRLCIETCIVR-NWRLSMQTHKYLNI 222


>gi|291044537|ref|ZP_06570246.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291011431|gb|EFE03427.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 267

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 104/227 (45%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 68  YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 109

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++    I      R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 110 -FGMMSLSDILGRLKIYA---ARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 165

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I+   E+++      V+  + +GF  + ER     
Sbjct: 166 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDVVGFCENMERKIRAH 219

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
            + L P   DG     +T   I      P     W+LSVQTHK+ GI
Sbjct: 220 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 266


>gi|157369053|ref|YP_001477042.1| radical SAM domain-containing protein [Serratia proteamaculans 568]
 gi|157320817|gb|ABV39914.1| Radical SAM domain protein [Serratia proteamaculans 568]
          Length = 223

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 104/233 (44%), Gaps = 39/233 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60
           Y I E+F TLQGEG   G  A+F R  GC +   W   +        R  D   + ++  
Sbjct: 3   YPINEMFQTLQGEGFFTGVPAIFIRLQGCPVGCSWCDTKHTWEKEANREVDMQRILVKTE 62

Query: 61  KG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +    G  + +QL  +I +Q  T     R+ V+TGGEP +    PL + L + G+   +E
Sbjct: 63  ESDAWGSASAEQLLAVIRQQGYTA----RHVVITGGEPCIYDLTPLTELLEEHGYGCQIE 118

Query: 118 TNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER------ 170
           T+GT E       W+ VSPK    + ++GG  +K++   +  + E       ER      
Sbjct: 119 TSGTHEIQCSAKTWVTVSPK----VNMRGG--MKVLSQALQRADEVKHPVGRERDIEALD 172

Query: 171 -------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                         +LQP+     EE T L I  C     WRLS+QTHK++ I
Sbjct: 173 ALLATLHDEKPRIIALQPISQK--EEATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|296315126|ref|ZP_06865067.1| radical SAM domain protein [Neisseria polysaccharea ATCC 43768]
 gi|296838043|gb|EFH21981.1| radical SAM domain protein [Neisseria polysaccharea ATCC 43768]
          Length = 212

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 104/227 (45%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
            +++  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 54  TFSMMSLSDILGR---LKAYAARNIIITGGEPTIQPHLDALLDTLKAEGYFLCLETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I+   E+++      V+  + +GF  + ER     
Sbjct: 111 PAPPQIDYVATSPKAYYAAKYEKSCIETADEVRI------VADGDVVGFCENMERKIRAR 164

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
            + L P   DG     +T   I      P     W+LSVQTHK+ GI
Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211


>gi|291514643|emb|CBK63853.1| Organic radical activating enzymes [Alistipes shahii WAL 8301]
          Length = 211

 Score = 81.6 bits (200), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 40/223 (17%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           ++  + E F T+QGEG HAG+ A F R  GC++            CR+CD  +       
Sbjct: 14  RMLPLVEDFYTIQGEGFHAGKPAYFIRLGGCDV-----------GCRWCDAKYTW----N 58

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
              Y    +  +I+          +  V+TGGEPLL     L + L +RG +I +ET+G+
Sbjct: 59  PKLYPPTDVQTVIDR---AMSCPAQAIVITGGEPLLYPLGVLTETLRERGLQIFLETSGS 115

Query: 122 IEPPQGI-DWICVSPK---AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177
             P  G+ DW+C+SPK      D   +   ELK++        E+   F++   +   + 
Sbjct: 116 -HPFSGVFDWVCLSPKRRQPPLDEAFERADELKVIV-------ESEEDFEWAERNAARVG 167

Query: 178 GP---FLEENTNLA-------ISYCFQNPKWRLSVQTHKFIGI 210
           G    FL+   ++A       + Y   +P+W +S+QTHK++ I
Sbjct: 168 GKCLLFLQPEWSVAEKVMPAIVEYAKAHPQWNISIQTHKYMHI 210


>gi|153000640|ref|YP_001366321.1| radical activating enzyme [Shewanella baltica OS185]
 gi|151365258|gb|ABS08258.1| conserved hypothetical protein [Shewanella baltica OS185]
          Length = 222

 Score = 81.6 bits (200), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 32/229 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58
           Y + E+F T+QGEG   G  A+F R  GC +   W   +Q  D L A  +      + + 
Sbjct: 3   YPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEAN-KVTPEQVISVD 61

Query: 59  GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
           GT  GR+  D  A  +   +       R+ V+TGGEP +     L + L+ +GF   +ET
Sbjct: 62  GTI-GRW-ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLRELTETLHSQGFATQIET 119

Query: 119 NGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENYIG------ 165
           +GT +     D W+ VSPK    + +KGG + L     + N     ++ EN+I       
Sbjct: 120 SGTFDINCADDTWVTVSPK----VNMKGGYKVLAQALNRANEIKHPIATENHIAELDELL 175

Query: 166 ----FDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                  +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 176 QDIDISTKAICLQPISQK--PRATELAMKVCITR-NWRLSIQTHKYLNI 221


>gi|188026339|ref|ZP_02961731.2| hypothetical protein PROSTU_03780 [Providencia stuartii ATCC 25827]
 gi|188022533|gb|EDU60573.1| hypothetical protein PROSTU_03780 [Providencia stuartii ATCC 25827]
          Length = 230

 Score = 81.6 bits (200), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 104/238 (43%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I EIF TLQGEG   G  AVF R  GC          + W   E    S      D  
Sbjct: 10  YPINEIFQTLQGEGVFTGVPAVFIRLQGCPVGCSWCDTKHTWEKEE----SKATTLGDIA 65

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
              +        +  +L +L+++Q  T     ++ V+TGGEP +   +PL   L  +G++
Sbjct: 66  LKTVDTDTWALADSHELINLMKKQGYT----AKHIVITGGEPCIYDLLPLTCELENQGYQ 121

Query: 114 IAVETNGTIEPPQGID--WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER- 170
             +ET+GT  P Q  D  W+ VSPK G    +KGG  L+++   +N + E       E+ 
Sbjct: 122 CQIETSGTY-PIQCSDKTWVTVSPKVG----MKGG--LQVLTESINRANEIKHPVAREKD 174

Query: 171 ------------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                              +LQP+    L   T L I  C     WRLS+QTHK++ I
Sbjct: 175 IEELDKLLAKRTEKHAPVVALQPISQKSLA--TKLCIDTCIAR-NWRLSIQTHKYLNI 229


>gi|85058492|ref|YP_454194.1| hypothetical protein SG0514 [Sodalis glossinidius str. 'morsitans']
 gi|84779012|dbj|BAE73789.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 223

 Score = 81.6 bits (200), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 104/233 (44%), Gaps = 39/233 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y + EIF TLQGEG   G  A+F R  GC          + W   E +R++A     +  
Sbjct: 3   YPLNEIFQTLQGEGYFTGVPAIFIRLQGCPVGCSWCDTKHTWQQDEAERVTAG----EIP 58

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
                 ++      +++  L+ +Q  T     R+ V+TGGEP L   +PL   L ++GF 
Sbjct: 59  LKTADSSRWASITAEEIIALMVKQGWTA----RHVVITGGEPCLHDLMPLTHTLEQQGFS 114

Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCD-----LKIKGGQELKLVFPQVNVSPENYIG 165
             +ET+GT E    PQ   W+ VSPK         L    G+  ++  P    S  + + 
Sbjct: 115 CQIETSGTQEIHCTPQ--TWVTVSPKINMRGGLPVLAQALGRSDEIKHPAARQSDIDELD 172

Query: 166 ------FDFER--FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                  D ++   +LQP+     E  T L I  C     WRLS+QTHK++ I
Sbjct: 173 ALLATLHDTKQRVIALQPISQK--EAATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|117923944|ref|YP_864561.1| radical SAM protein [Magnetococcus sp. MC-1]
 gi|117607700|gb|ABK43155.1| Radical SAM domain protein [Magnetococcus sp. MC-1]
          Length = 204

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 97/215 (45%), Gaps = 24/215 (11%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y+I +IF ++QGE  H G   VF RFSGC L           +C +CD + +  Q  K  
Sbjct: 5   YAICDIFHSIQGEATHTGLPMVFIRFSGCPL-----------RCSWCD-EPLHRQADKAE 52

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT- 121
              + QL   I E            +LTGGEPL+   +  L+     +G+ IA+ET G  
Sbjct: 53  HLTLTQLRSRILEL----APHTTNLLLTGGEPLMAPHLDRLVDYFKDQGYWIAMETCGEG 108

Query: 122 IEPPQGIDWICVSPKAGCDLKI-KGGQELKLVF--PQVNVSPENYIGFDFERFSLQPMDG 178
            E P  +DW+ +SPK      + +   E+KLV          E           LQP   
Sbjct: 109 GEIPAEVDWVTLSPKNQLPQSLYERADEVKLVLGADADQSDKERLTQCHHPNLWLQPRAL 168

Query: 179 PFLEENTNLAISYCF---QNPKWRLSVQTHKFIGI 210
           P   +   +A+ Y +       WRLS+QTHK+IG+
Sbjct: 169 PTGPDPMAVALCYRWALESGGAWRLSLQTHKYIGV 203


>gi|238786213|ref|ZP_04630161.1| hypothetical protein yberc0001_11680 [Yersinia bercovieri ATCC
           43970]
 gi|238712877|gb|EEQ04941.1| hypothetical protein yberc0001_11680 [Yersinia bercovieri ATCC
           43970]
          Length = 223

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 106/234 (45%), Gaps = 39/234 (16%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59
           LY I E+F TLQGEG   G  A+F R  GC +   W   +        R  D   + ++ 
Sbjct: 2   LYPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKEADREVDMQRIMVKT 61

Query: 60  TKG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
            +    G  +  QL  +  +Q  T     R+ V+TGGEP +   +PL   L + G+   +
Sbjct: 62  AESDAWGSASEQQLLAIFSQQGYT----ARHVVITGGEPAIYDLLPLTSVLEQAGYSCQI 117

Query: 117 ETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE-------------- 161
           ET+GT E       W+ VSPK    +K++GG  LK++   +  + E              
Sbjct: 118 ETSGTHEVQCSAATWVTVSPK----VKMRGG--LKILPQALQRADEIKHPVGRLRDIEAL 171

Query: 162 ----NYIGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                 +  D +R  +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 172 EVLLATLHDDKKRIIALQPISQK--DDATKLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|305665081|ref|YP_003861368.1| hypothetical protein FB2170_02240 [Maribacter sp. HTCC2170]
 gi|88709833|gb|EAR02065.1| hypothetical protein FB2170_02240 [Maribacter sp. HTCC2170]
          Length = 210

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 37/220 (16%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + E F T+QGEG H G  A F R  GC++            C +CD      +    
Sbjct: 15  MLPLMEEFYTIQGEGYHKGTAAYFVRVGGCDV-----------GCHWCDVK----ESWDA 59

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +    +  ++    +         V+TGGEPL     PL QAL  +     +ET+G  
Sbjct: 60  ETHPPTDIKSIV----VNAAVYSDTIVVTGGEPLTWDMGPLTQALKSKNINTHIETSGAY 115

Query: 123 EPPQGIDWICVSPKAG---CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS------- 172
           +     DWIC+SPK       L  +   ELK++     V  ++ + F  E+ +       
Sbjct: 116 KLTGDWDWICLSPKKNKLPSGLIYEKAHELKVI-----VYNKHDLIFAEEQAAQVGKNCI 170

Query: 173 --LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             LQP +    ++   + + Y  +NPKW++S+QTHK++ I
Sbjct: 171 LYLQP-EWSVRDKVVPMIVEYVMKNPKWKVSLQTHKYLNI 209


>gi|238797157|ref|ZP_04640659.1| hypothetical protein ymoll0001_8670 [Yersinia mollaretii ATCC
           43969]
 gi|238719004|gb|EEQ10818.1| hypothetical protein ymoll0001_8670 [Yersinia mollaretii ATCC
           43969]
          Length = 229

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 103/237 (43%), Gaps = 41/237 (17%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGI 57
           + LY I E+F TLQGEG   G  A+F R  GC +   W   +        R  D   + +
Sbjct: 6   LMLYPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKEADREVDMQRIMV 65

Query: 58  QGTKG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
           +  +    G     QL D+  +Q  T     R+ V+TGGEP +    PL   L + G+  
Sbjct: 66  KTAESDAWGSATEQQLLDIFSQQGYT----ARHVVITGGEPSIYDLRPLTSLLEQGGYSC 121

Query: 115 AVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY---------- 163
            +ET+GT E       W+ VSPK    + ++GG +   V PQ     +            
Sbjct: 122 QIETSGTHEVQCSATTWVTVSPK----VNMRGGLK---VLPQALQRADEIKHPVGRLRDI 174

Query: 164 ---------IGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                    +  D +R  +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 175 EALEALLATLHDDKKRIIALQPISQK--EDATKLCIETCIAK-NWRLSMQTHKYLNI 228


>gi|294787822|ref|ZP_06753066.1| radical SAM domain protein [Simonsiella muelleri ATCC 29453]
 gi|294484115|gb|EFG31798.1| radical SAM domain protein [Simonsiella muelleri ATCC 29453]
          Length = 205

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 56/232 (24%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           ++ I EIF TLQGEG + G  +VF RF  CNL            C +CDT++        
Sbjct: 5   IFRIVEIFETLQGEGYNTGMPSVFIRFGKCNL-----------ACHWCDTNY-------- 45

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
            ++ +  L  ++++ +   +   +  ++TGGEP +Q  +  L+  L   G+ IA+ETNG 
Sbjct: 46  QQFEMMTLTQIMDQVY---DYSAKNIIITGGEPTIQPQLEILLNRLKSEGYFIAIETNGL 102

Query: 122 IEPPQGIDWICVSPK-----AGCDLKIKGGQELKLVFPQVNVSPENYIGF--------DF 168
              P+ ID+I  SPK     A     +    E+++V     V  ++   F          
Sbjct: 103 RAVPEQIDYIATSPKRLYANAYDKTCLSAADEVRIV-----VDSDDIFSFCEIIEQKIRA 157

Query: 169 ERFSLQPMDGPFLEENTNLAISYCF----------QNPKWRLSVQTHKFIGI 210
           +R+ L P      E+N  + I                P W+LS+QTHK  GI
Sbjct: 158 KRYYLSP-----CEQNGEMNILATITLLGKLNARPNQPHWQLSIQTHKLCGI 204


>gi|90579565|ref|ZP_01235374.1| putative organic radical activating enzyme [Vibrio angustum S14]
 gi|90439139|gb|EAS64321.1| putative organic radical activating enzyme [Vibrio angustum S14]
          Length = 222

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 103/241 (42%), Gaps = 53/241 (21%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL----------WSGREQDRLSAQCRFCDT 52
           +Y I E+F T+QGEG   G  A+F R   C +          W+   QD +S       T
Sbjct: 1   MYKINEVFETIQGEGVFTGVPAIFVRLQVCPVGCSWCDTKQTWTAEPQDLVSLDQIMAKT 60

Query: 53  DFVGIQGTKGGRYNVDQ--LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110
                 G      N+D   +  L+++Q  T     ++ V+TGGEP +    PL QAL + 
Sbjct: 61  ------GDSPLWTNLDANGVVQLLQDQKYTA----KHVVITGGEPCIYDLRPLTQALEEA 110

Query: 111 GFEIAVETNGTIEPPQGID-WICVSPKAGCDLKI--------------------KGGQEL 149
           GF   +ET+GT E     + W+ VSPK     K+                    K  ++L
Sbjct: 111 GFNCQIETSGTSEIQTSDNTWVTVSPKINMKAKLPVLASSLARANEIKHPVGTSKDIEQL 170

Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
             +   V + P+  I       +LQP+        T L I  C Q   WRLS+QTHK++ 
Sbjct: 171 DALIDGVTLKPDVTI-------ALQPISQK--TRATELCIETCIQR-NWRLSIQTHKYLA 220

Query: 210 I 210
           I
Sbjct: 221 I 221


>gi|227329734|ref|ZP_03833758.1| hypothetical protein PcarcW_21303 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 223

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 31/229 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58
           Y I E+F TLQGEG   G  AVF R  GC +   W   +   D+L+ +    D   V  +
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAVFVRLQGCPVGCSWCDTKHTWDKLAERETSLDQVLVKTE 62

Query: 59  GTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
            +   G  + D +  L+ ++  T     R+ V+TGGEP +    PL   L K+GF   +E
Sbjct: 63  ESDAWGAASADDILALMAQEGYTA----RHIVITGGEPCIHDLAPLTLQLEKQGFSCQIE 118

Query: 118 TNGTIE---PPQGIDWICVSPKAG-------CDLKIKGGQELKL-VFPQVNVSPENYI-- 164
           T+GT +    P+   W+ VSPK          D  ++   E+K  V  + ++   + +  
Sbjct: 119 TSGTHDVRCSPKT--WVTVSPKVNMRGGMKVLDQALQRADEIKHPVARERDIEALDALLA 176

Query: 165 GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             D ++    +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 177 RLDDDKPRIVALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|217973439|ref|YP_002358190.1| radical activating enzyme [Shewanella baltica OS223]
 gi|217498574|gb|ACK46767.1| radical activating enzyme [Shewanella baltica OS223]
          Length = 222

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 106/229 (46%), Gaps = 32/229 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58
           Y + E+F T+QGEG   G  A+F R  GC +   W   +Q  D L    +      + + 
Sbjct: 3   YPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEVN-KVMPEQVISVD 61

Query: 59  GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
           GT G R+  D  A  +   +       R+ V+TGGEP +     L + L+ +GF   +ET
Sbjct: 62  GTIG-RW-ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLCELTETLHSQGFATQIET 119

Query: 119 NGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENYI------- 164
           +GT +     D W+ VSPK    + +KGG + L     + N     ++ EN+I       
Sbjct: 120 SGTFDINCADDTWVTVSPK----VNMKGGYKVLTQALNRANEIKHPIATENHIAELDELL 175

Query: 165 -GFDF--ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            G D   +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 176 QGIDISTKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221


>gi|308187939|ref|YP_003932070.1| hypothetical protein Pvag_2457 [Pantoea vagans C9-1]
 gi|308058449|gb|ADO10621.1| Uncharacterized protein ygcF [Pantoea vagans C9-1]
          Length = 223

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 103/236 (43%), Gaps = 43/236 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGRE---QDRLSAQCRFCDTDFVG 56
            Y I E+F TLQGEG + G  A+F R  GC +   W   +   + R   +    D     
Sbjct: 2   FYPINEMFQTLQGEGYYTGVPAIFIRLQGCPVGCSWCDTKHTWEKRADRETSLGDILIKT 61

Query: 57  IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
           ++    G  +   L   IE+Q  T     R+ V+TGGEP +    PL   L + GF+  +
Sbjct: 62  VESDAWGDADASTLLRSIEQQGWT----ARHVVITGGEPAIYDLRPLTTILEQHGFQCQI 117

Query: 117 ETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER----- 170
           ET+GT E       W+ VSPK    + ++GG +   V PQ  +S  + I     R     
Sbjct: 118 ETSGTHEIHCSEQTWVTVSPK----VNMRGGYD---VLPQA-LSRADEIKHPVARQRDVD 169

Query: 171 ----------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                            +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 170 ALDGLLAGIDDTKARIIALQPISRK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|332036527|gb|EGI72995.1| queuosine biosynthesis QueE radical SAM [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 221

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 106/240 (44%), Gaps = 52/240 (21%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD--------- 53
           +Y I E+F T+QGE    G  ++F R  GC +            C +CDT          
Sbjct: 1   MYKINEVFETIQGEASFTGTPSIFLRLQGCPV-----------GCSWCDTKQTWDVDNVY 49

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKE----GRYCVLTGGEPLLQVDVPLIQALNK 109
            V +  T   + + D  A+   EQ +   +      ++ V+TGGEP +    P+   L++
Sbjct: 50  KVSLDETVEKKADSDHWANASAEQILALFQSRGYTAKHVVITGGEPCMFDLNPVCNLLHE 109

Query: 110 RGFEIAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSP 160
            GF   +ET+GT E   P Q   W+ VSPK    + ++GG E L     + N     V+ 
Sbjct: 110 HGFSTQIETSGTFEILAPEQ--TWVTVSPK----INMRGGYEVLTSTMKRANEIKHPVAM 163

Query: 161 ENYI----------GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           + ++          G + +   LQP+        T LAI  C     WRLS+Q HK++GI
Sbjct: 164 QKHVEELEELFAKTGVNPKLVYLQPISQKV--SATKLAIDTCIAK-NWRLSIQVHKYLGI 220


>gi|86157724|ref|YP_464509.1| radical SAM family protein [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774235|gb|ABC81072.1| Radical SAM [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 210

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 104/229 (45%), Gaps = 55/229 (24%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF ++QGEG  AGR  VF RF+GC+L           +C +CDT +       GG  
Sbjct: 3   VTEIFFSIQGEGSRAGRPCVFVRFTGCDL-----------RCGYCDTAY----AFHGG-V 46

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124
           ++D+ A L E          R+  LTGGEP+LQ ++P L + L  RG+E+AVET+G    
Sbjct: 47  DMDRAAVLAE----VARHPARFVCLTGGEPMLQRELPDLARDLVARGYEVAVETHGQ--- 99

Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENYIGF-----DFERFSLQPMDG 178
            + +D +        D+K  G  E+   F  ++ + P + + F     D  R+S + +  
Sbjct: 100 -RPLDALPAEAIRVVDVKTPGSGEVTTDFAYLDRLQPHDEVKFVVCSEDDFRWSREVVRR 158

Query: 179 PFLEENTNLAISYCFQNPKW-------------------RLSVQTHKFI 208
             LE    +  S     P W                   RLS+Q HK I
Sbjct: 159 HALEGRVQVLFS-----PAWGQVAPRDLVRWMLESGLDARLSLQVHKVI 202


>gi|87300560|ref|ZP_01083402.1| possible organic radical activating enzyme [Synechococcus sp. WH
           5701]
 gi|87284431|gb|EAQ76383.1| possible organic radical activating enzyme [Synechococcus sp. WH
           5701]
          Length = 218

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 102/227 (44%), Gaps = 39/227 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F +LQGEG HAGR A F R +GC           S  C +CDT            +
Sbjct: 10  VVETFHSLQGEGVHAGRSAFFIRLAGC-----------SVGCSWCDTK----HSWPADAH 54

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK------RGFEIAVETN 119
            + +  DL     +   +   + V+TGGEPL     PL +AL +          + +ET+
Sbjct: 55  PLCRFQDLAASAALAAAEGAAFVVITGGEPLHHNLDPLCEALRQGSGAGPSPLPLHLETS 114

Query: 120 GTIEPPQG-IDWICVSPK----------AGC-DLKIKGGQELKLVFPQ---VNVSPENYI 164
           G ++P  G  +WI +SPK          A C +LK+   +   L F +     V     +
Sbjct: 115 G-VDPLSGRFEWITLSPKRHRPPTAELLAACHELKVVIHEIADLAFAETMAAAVRSACPV 173

Query: 165 GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                +  LQP  G        LA+ +  +NP WRLS+Q+HK++G+R
Sbjct: 174 KGALPQLLLQPGWGS--AAGQELAVQHVRRNPAWRLSLQSHKWLGVR 218


>gi|325954686|ref|YP_004238346.1| radical SAM protein [Weeksella virosa DSM 16922]
 gi|323437304|gb|ADX67768.1| Radical SAM domain protein [Weeksella virosa DSM 16922]
          Length = 215

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 97/222 (43%), Gaps = 39/222 (17%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +L  + E F TLQGEG +AG  A F R  GC++            C +CD      +   
Sbjct: 19  RLLPVMEHFYTLQGEGAYAGVAAYFIRLGGCDV-----------GCHWCDVK----ESWD 63

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
              + +  +A L +E         +  ++TGGEPL+     L   L+K G  I +ET+G 
Sbjct: 64  AEIHPLTDIATLAKE----AAAICKTIIITGGEPLMWDLTFLTSELHKHGANIHIETSGA 119

Query: 122 IEPPQGIDWICVSPKAG---CDLKIKGGQELKLVF----------PQVNVSPENYIGFDF 168
                 IDW+ +SPK      +   +   ELK++            Q     +N + +  
Sbjct: 120 YPLTGEIDWVTLSPKKTKLPVESIYQQANELKMIIYNQHDFTFAEEQAAKVKDNCLLYLQ 179

Query: 169 ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             +S +    P L       + +  QNPKWR++VQTHK++ I
Sbjct: 180 VEWSKRDSMSPKL-------VEFIKQNPKWRITVQTHKYLDI 214


>gi|261364119|ref|ZP_05977002.1| radical SAM domain protein [Neisseria mucosa ATCC 25996]
 gi|288567697|gb|EFC89257.1| radical SAM domain protein [Neisseria mucosa ATCC 25996]
          Length = 212

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 99/221 (44%), Gaps = 36/221 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           ++ +  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 54  KFGMMSLSDILGR---LKTYTARNIIITGGEPTIQPHLDTLLDALKAEGYFLCIETNGLK 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS----PENYIGFDFERFSL 173
             P  ID++  SPKA    K     I    E+++V     V+     E  I   +   S 
Sbjct: 111 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRIVADGDVVAFCENMERKIRARYYYLSP 170

Query: 174 QPMDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
              +G     +T   I      P     W+LSVQTHK+ GI
Sbjct: 171 CEQNGAMNIYDTIHQIGILNSRPDAPVHWQLSVQTHKWAGI 211


>gi|24374045|ref|NP_718088.1| radical activating enzyme [Shewanella oneidensis MR-1]
 gi|24348519|gb|AAN55532.1|AE015692_2 radical activating enzyme [Shewanella oneidensis MR-1]
          Length = 222

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 104/234 (44%), Gaps = 42/234 (17%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL----------WSGREQDRLSAQCRFCDTD 53
           Y + E+F T+QGEG   G  A+F R  GC +          W   E +++S +       
Sbjct: 3   YPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDLLETNKVSPE------Q 56

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
            + + GT  GR+       LIE     G    R+ V+TGGEP +     L   L++ GF 
Sbjct: 57  VITVDGTV-GRWANHTAQSLIEAFHAKG-YTARHVVITGGEPCMYDLHELTHMLHRAGFA 114

Query: 114 IAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENYIGF 166
             +ET+GT E     D W+ VSPK    + +KGG   L     + N     ++ +N+I  
Sbjct: 115 TQIETSGTFEVKCDKDTWVTVSPK----VNMKGGYPVLAQALNRANEIKHPIATQNHIDE 170

Query: 167 DFERFS----------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             E  S          LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 171 LDELLSDIDVSAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221


>gi|16120216|ref|NP_395804.1| hypothetical protein VNG6305C [Halobacterium sp. NRC-1]
 gi|169237476|ref|YP_001690680.1| hypothetical protein OE5197R [Halobacterium salinarum R1]
 gi|10584342|gb|AAG20939.1| Vng6305c [Halobacterium sp. NRC-1]
 gi|167728703|emb|CAP15547.1| hypothetical protein OE5197R [Halobacterium salinarum R1]
          Length = 257

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/132 (41%), Positives = 68/132 (51%), Gaps = 18/132 (13%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F +LQGEG  AG  +VF R SGCNL           +C FCD+     + T     
Sbjct: 22  INELFYSLQGEGKLAGTPSVFVRTSGCNL-----------RCWFCDSYHTSWEPTH-ATM 69

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           +VD   D+I E  +   +   + VLTGGEPLL  D V L+  L   G+   VETNGTI  
Sbjct: 70  SVD---DIIAE--VQSYEHADHVVLTGGEPLLHDDAVVLLDRLAALGYHTTVETNGTIHR 124

Query: 125 PQGIDWICVSPK 136
              ID   VSPK
Sbjct: 125 DAPIDLASVSPK 136


>gi|120598962|ref|YP_963536.1| radical activating enzyme [Shewanella sp. W3-18-1]
 gi|120559055|gb|ABM24982.1| radical activating enzyme [Shewanella sp. W3-18-1]
 gi|319426518|gb|ADV54592.1| Radical SAM domain protein [Shewanella putrefaciens 200]
          Length = 222

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 103/231 (44%), Gaps = 36/231 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58
           Y + E+F T+QGEG   G  A+F R  GC +   W   +Q  D L A  +      + + 
Sbjct: 3   YPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEAN-KVSPEQVITVD 61

Query: 59  GTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
           GT G    +  D L      +  T     R+ V+TGGEP +     L + L+ +GF   +
Sbjct: 62  GTIGRWAEHTADSLIAAFNAEGFTA----RHIVITGGEPCMYDLRELTETLHSQGFATQI 117

Query: 117 ETNGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENY------ 163
           ET+GT E     + W+ VSPK    + +KGG   L     + N     ++ EN+      
Sbjct: 118 ETSGTFEVNCADNTWVTVSPK----VNMKGGYPVLAQALNRANEIKHPIATENHIDELDE 173

Query: 164 ----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               I    +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 174 LLQDIDISAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLDI 221


>gi|119469471|ref|ZP_01612375.1| queC protein [Alteromonadales bacterium TW-7]
 gi|119447006|gb|EAW28276.1| queC protein [Alteromonadales bacterium TW-7]
          Length = 221

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 105/240 (43%), Gaps = 52/240 (21%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD--------- 53
           +Y I E+F T+QGE    G  ++F R  GC +            C +CDT          
Sbjct: 1   MYKINEVFETIQGEASFTGTPSIFLRLQGCPV-----------GCSWCDTKQTWDVDNVY 49

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKE----GRYCVLTGGEPLLQVDVPLIQALNK 109
            V +  T   + + D  AD   EQ +   K      ++ V+TGGEP +     + + L+ 
Sbjct: 50  KVSLDETVEKKADSDHWADASAEQVLELFKSRGYTAKHVVITGGEPCMYDLNQVCKLLHD 109

Query: 110 RGFEIAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSP 160
            GF   +ET+GT E   P Q   W+ VSPK    + ++GG E L     + N     V+ 
Sbjct: 110 NGFTTQIETSGTFEILAPEQ--TWVTVSPK----INMRGGYEVLTSAMKRANEIKHPVAM 163

Query: 161 ENYI----------GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           + ++          G + +   LQP+        T LAI  C     WRLS+Q HK++GI
Sbjct: 164 QKHVEELEELFAKTGVNPKLVYLQPISQKV--SATKLAIDTCIAK-NWRLSIQVHKYLGI 220


>gi|319639356|ref|ZP_07994107.1| NrdG protein [Neisseria mucosa C102]
 gi|317399540|gb|EFV80210.1| NrdG protein [Neisseria mucosa C102]
          Length = 211

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 99/221 (44%), Gaps = 36/221 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 12  YRIVEIFESLQGEGWNTGMPAVFIRLGKCNL-----------ACSWCDTDYL-------- 52

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           ++ +  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 53  KFGMMSLSDILGR---LKTYTARNIIITGGEPTIQPHLDTLLNALKAEGYFLCIETNGLN 109

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVF--PQVNVSPENYIGFDFERFSLQP 175
             P  ID++  SPKA    K     I+   E+++V     +    E         + L P
Sbjct: 110 PAPPQIDYVATSPKACYAAKYEKSCIEKADEVRIVADGEVIAFCQEMERKIRARHYYLSP 169

Query: 176 --MDGPFLEENTNLAI----SYCFQNPKWRLSVQTHKFIGI 210
              DG     +T   I    S       W+LSVQTHK+ GI
Sbjct: 170 CEQDGAMNIYDTIRQIGVLNSRADAPVHWQLSVQTHKWAGI 210


>gi|300775377|ref|ZP_07085239.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Chryseobacterium gleum ATCC 35910]
 gi|300506117|gb|EFK37253.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Chryseobacterium gleum ATCC 35910]
          Length = 209

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 101/229 (44%), Gaps = 53/229 (23%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           K+  + E F TLQGEG H G+ A F R  GC++            C +CD          
Sbjct: 13  KMLPVMEHFYTLQGEGAHTGKAAYFIRLGGCDV-----------GCHWCDV--------- 52

Query: 62  GGRYNVD-QLADLIEEQWITGEKEGRYC---VLTGGEPLL-QVDVPLIQALNKRGFEIAV 116
             + + D +L  L+  + I  E   R+C   VLTGGEPL+  +D+ L   L + G  I +
Sbjct: 53  --KESWDPELHPLMNAEEI-AETAARHCKTIVLTGGEPLMWNLDI-LTSKLKELGCTIHI 108

Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
           ET+G       +DWI +SPK       K G   + ++ + N      I F+   F+    
Sbjct: 109 ETSGAYPMSGHLDWITLSPK-------KTGLPKEEIYQKANEL--KVIIFNHHDFTFAQE 159

Query: 177 DGPFLEENTNLAI---------------SYCFQNPKWRLSVQTHKFIGI 210
               + EN  L +                +  ++P+W+ SVQTHK++ I
Sbjct: 160 QAAKVSENCKLYLQSEWSKRNDMYPKITDFILEHPEWQASVQTHKYLNI 208


>gi|238758186|ref|ZP_04619365.1| hypothetical protein yaldo0001_25950 [Yersinia aldovae ATCC 35236]
 gi|238703516|gb|EEP96054.1| hypothetical protein yaldo0001_25950 [Yersinia aldovae ATCC 35236]
          Length = 225

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 104/233 (44%), Gaps = 39/233 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60
           Y I E+F TLQGEG   G  A+F R  GC +   W   +        R  D   + ++  
Sbjct: 5   YPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKEADREVDMQRIMVKTA 64

Query: 61  KG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +    G  +  QL DL  +Q  T     R+ V+TGGEP +    PL   L + G+   +E
Sbjct: 65  ESDAWGSASEQQLLDLFIQQGYT----ARHVVITGGEPAIYDLFPLTSQLEQAGYRCQIE 120

Query: 118 TNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE--------------- 161
           T+GT E       W+ VSPK    + ++GG  LK++   +  + E               
Sbjct: 121 TSGTHEVRCSATTWVTVSPK----VNMRGG--LKVLPQALERADEIKHPVGRLRDIEALE 174

Query: 162 ---NYIGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                +  D +R  +LQP+     +E T L I  C     WRLS+QTHK++ I
Sbjct: 175 ALLETLTDDKKRIIALQPISQK--DEATKLCIETCIAR-NWRLSMQTHKYLNI 224


>gi|238650659|ref|YP_002916511.1| queuosine biosynthesis protein [Rickettsia peacockii str. Rustic]
 gi|238624757|gb|ACR47463.1| queuosine biosynthesis protein [Rickettsia peacockii str. Rustic]
          Length = 225

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 44/227 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           ++ IF T+QGEG   G  A+F R  GCNL            C FCDT+F           
Sbjct: 20  VQSIFKTIQGEGIFVGCPAIFIRLGGCNLA-----------CNFCDTEFEAFD-----LV 63

Query: 66  NVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122
           ++D++ + +E   +    EK     V+TGGEP+ Q    L Q L  R  ++ +ETNGT+ 
Sbjct: 64  DIDKILNKVESLALNSKNEKSINLVVITGGEPMRQPIELLCQKLLDRDVKVQIETNGTLY 123

Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN----VSPENYI-----------GF 166
              P+ +  IC SPK G     K  ++L    P+++    +  +N +            +
Sbjct: 124 RSLPKEVSIIC-SPKVGKTSYSKIREDL---LPKISAVKFIVAKNILEYSLIPEVGQTSY 179

Query: 167 DFERFSLQPMDGP---FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +   F +QPMD        EN  LA+    ++   RLS+QTHKF+ I
Sbjct: 180 NIPVF-IQPMDQNNQRLNGENNELAVKLALES-GTRLSLQTHKFLNI 224


>gi|113953027|ref|YP_732046.1| organic radical activating protein [Synechococcus sp. CC9311]
 gi|113880378|gb|ABI45336.1| possible organic radical activating enzyme [Synechococcus sp.
           CC9311]
          Length = 202

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 98/218 (44%), Gaps = 34/218 (15%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F +LQGEG H GR A F R +GC++            CR+CDT       +   R 
Sbjct: 7   VVETFHSLQGEGLHTGRSAFFIRLAGCDV-----------GCRWCDTKHSWPADSHPKRL 55

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-IAVETNGTIEP 124
               + DL  E     E    + V+TGGEPL      L  A+     + + +ET+G    
Sbjct: 56  ----VKDLAIEATSAAETGAAFVVITGGEPLHHNLDELTAAIRSGCSQPVHLETSGVDRL 111

Query: 125 PQGIDWICVSPK-----------AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
               DWI +SPK           A  +LK+   +   L+F +V  +           + L
Sbjct: 112 SGAPDWITLSPKRHKPPRQDVVQACHELKVVVHEPADLLFAEVVAAQAPQAN-----WLL 166

Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           QP  G   +E   LA+    ++ +WRLS+Q+HK++G+R
Sbjct: 167 QP--GWDCKEGLQLAVGKVQKDQRWRLSMQSHKWLGVR 202


>gi|55378864|ref|YP_136714.1| hypothetical protein rrnAC2164 [Haloarcula marismortui ATCC 43049]
 gi|55231589|gb|AAV47008.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 260

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 67/132 (50%), Gaps = 19/132 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F +LQGEG  AG  +VF R SGCNL           +C FCD+     + T    +
Sbjct: 26  INELFQSLQGEGRLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPTHDW-F 73

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEP 124
            VD +   IEE       +  + VLTGGEPL+      L+  L  RG+   VETNGT+ P
Sbjct: 74  TVDDVLAAIEEY------DANHVVLTGGEPLIHDSSEDLLARLTDRGYHTTVETNGTVVP 127

Query: 125 PQGIDWICVSPK 136
              ID   VSPK
Sbjct: 128 DAPIDLASVSPK 139


>gi|319776568|ref|YP_004139056.1| methyltransferase [Haemophilus influenzae F3047]
 gi|317451159|emb|CBY87392.1| Predicted methyltransferase [Haemophilus influenzae F3047]
          Length = 209

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 105/220 (47%), Gaps = 35/220 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           ++I EIF +LQGEG + G  +VF RF  CNL            C +CDT +   +     
Sbjct: 11  FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           R++V Q+ + +           +  ++TGGEP +  ++  L++     G+ +A+ETNG  
Sbjct: 55  RWSVSQILEKVR------SFSSKNIIITGGEPTIVPEIEYLLEQFKSDGYFLAIETNGLK 108

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175
             P  ID+I  SPK+    K     I    E+++V      S    I      + + L P
Sbjct: 109 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 168

Query: 176 --MDGP--FLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210
             +DG    LE  T L  ++     PKW+LS+QTHK IGI
Sbjct: 169 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGI 208


>gi|221135470|ref|ZP_03561773.1| organic radical activating protein [Glaciecola sp. HTCC2999]
          Length = 227

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 105/236 (44%), Gaps = 45/236 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT---------DF 54
           Y I EIF ++QGEG + G  ++F R  GC +            C +CDT         D 
Sbjct: 7   YPINEIFESIQGEGSYTGVPSIFIRLQGCPVG-----------CPWCDTQHTWKVDTDDQ 55

Query: 55  VGI-----QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
           + +     +      + +  +  L+ E  I G    ++ V+TGGEP +   VPL + L  
Sbjct: 56  IPVVQLREKSADAPTHALMNVTALLHEYEIRGYL-AKHVVITGGEPAMHDLVPLTEVLLS 114

Query: 110 RGFEIAVETNGTIEPPQGID-WICVSPKAGC--------DLKIKGGQELKLVFPQVNVSP 160
           +GF + +ET+GT       D ++ VSPK           ++  +  +    V  Q +V  
Sbjct: 115 KGFSVQIETSGTFALRCADDVYVTVSPKIDMPGKYPILPEVMARANEIKHAVAMQKHV-- 172

Query: 161 ENYIGFDFERFSLQPMDGPFLE------ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + +    ER  +Q     +L+        T LA+  C +   WRLS+QTHKFIGI
Sbjct: 173 -DELKLLLERAPIQTNTLIYLQPISQQARATQLAVETCIKE-NWRLSLQTHKFIGI 226


>gi|146292953|ref|YP_001183377.1| radical activating enzyme [Shewanella putrefaciens CN-32]
 gi|145564643|gb|ABP75578.1| radical activating enzyme [Shewanella putrefaciens CN-32]
          Length = 222

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 103/231 (44%), Gaps = 36/231 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58
           Y + E+F T+QGEG   G  A+F R  GC +   W   +Q  D L A  +      + + 
Sbjct: 3   YPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEAN-KVSPEQVITVD 61

Query: 59  GTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
           GT G    +  D L      +  T     R+ V+TGGEP +     L + L+ +GF   +
Sbjct: 62  GTIGRWAEHTADSLIAAFNAKGFTA----RHIVITGGEPCMYDLRELTETLHSQGFATQI 117

Query: 117 ETNGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENY------ 163
           ET+GT E     + W+ VSPK    + +KGG   L     + N     ++ EN+      
Sbjct: 118 ETSGTFEVNCADNTWVTVSPK----VNMKGGYPVLAQALNRANEIKHPIATENHIDELDE 173

Query: 164 ----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               I    +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 174 LLQDIDISAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLDI 221


>gi|126090177|ref|YP_001041658.1| hypothetical protein Sbal_4540 [Shewanella baltica OS155]
 gi|126174470|ref|YP_001050619.1| radical activating enzyme [Shewanella baltica OS155]
 gi|125997675|gb|ABN61750.1| radical activating enzyme [Shewanella baltica OS155]
 gi|125999833|gb|ABN63903.1| hypothetical protein Sbal_4540 [Shewanella baltica OS155]
          Length = 222

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 104/229 (45%), Gaps = 32/229 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58
           Y + E+F T+QGEG   G  A+F R  GC +   W   +Q  D L    +      + + 
Sbjct: 3   YPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEVN-KVMPEQVISVD 61

Query: 59  GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
           GT G R+  D  A  +   +       R+ V+TGGEP +     L + L+ +GF   +ET
Sbjct: 62  GTIG-RW-ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLCELTETLHSQGFATQIET 119

Query: 119 NGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENYIG------ 165
           +GT +     D W+ VSPK    + +KGG + L     + N     ++ EN+I       
Sbjct: 120 SGTFDINCADDTWVTVSPK----VNMKGGYKVLTQALNRANEIKHPIATENHIAELDELL 175

Query: 166 ----FDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                  +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 176 QDIDISAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221


>gi|332140739|ref|YP_004426477.1| radical activating enzyme [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550761|gb|AEA97479.1| radical activating enzyme [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 224

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 43/238 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-------- 52
           M   +I E+F T+QGEG H G  ++F R  GC              C +CDT        
Sbjct: 1   MSTLNINEMFETIQGEGAHTGVPSIFVRLQGC-----------PVGCPWCDTKHTWEIKP 49

Query: 53  ------DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                 + V  +G +   Y +   +DL+ +    G    ++ V+TGGEP +    PL   
Sbjct: 50  DLSVTPEAVITKGQESETYFISNESDLLTQFGHEG-YVAKHVVITGGEPCMYDLRPLTTL 108

Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSP----KAGCDL---------KIKGGQELKLV 152
           L+ +G+   +ET+GT E       ++ VSP    K G D+         +IK    ++  
Sbjct: 109 LHDKGYTTQIETSGTFEILCDERTYVTVSPKINMKGGYDVLISALERANEIKHPIAMQKH 168

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             +++    N      ++  LQP+     +  T LA+  C +   WRLS+QTHK+IGI
Sbjct: 169 IDELDALLANVSSLKGKQVCLQPISQQ--KRATELAVRTCIER-NWRLSLQTHKYIGI 223


>gi|317054935|ref|YP_004103402.1| Radical SAM domain-containing protein [Ruminococcus albus 7]
 gi|315447204|gb|ADU20768.1| Radical SAM domain protein [Ruminococcus albus 7]
          Length = 224

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/146 (37%), Positives = 78/146 (53%), Gaps = 18/146 (12%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    + E F+++ GEG +AG +A+F RF+GCNL           QC +CDT +      
Sbjct: 1   MGTLKLAENFVSINGEGRYAGELALFMRFAGCNL-----------QCDWCDTKWANGADA 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
                   QLA++ E+     +  G + V LTGGEPLLQ D+  LI ALN RG ++ +ET
Sbjct: 50  PFTEKTAVQLAEIAED---AADGYGLHRVTLTGGEPLLQKDIAELINALNDRGLDVEIET 106

Query: 119 NGTIEPPQGIDWIC-VSPKAGCDLKI 143
           NG++ P   +  IC V P    D K+
Sbjct: 107 NGSV-PIAPVAEICRVRPVFTMDYKL 131


>gi|51473785|ref|YP_067542.1| hypothetical protein RT0595 [Rickettsia typhi str. Wilmington]
 gi|51460097|gb|AAU04060.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington]
          Length = 231

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 104/226 (46%), Gaps = 42/226 (18%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           ++ IF T+QGEG   G  ++F R  GCNL            C FCDT+F   +       
Sbjct: 26  VQSIFKTIQGEGIFVGYPSIFIRLGGCNLA-----------CNFCDTEFEDFE-----LI 69

Query: 66  NVDQLADLIEEQWITGE--KEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122
           ++DQ+ + ++   +  +  K     V+TGGEP+ Q    L Q L  + F++ +ETNGT+ 
Sbjct: 70  DIDQIINKVQNLSLNSKNSKTINLVVITGGEPMRQPIGLLCQKLLDQDFKVQIETNGTLY 129

Query: 123 -EPPQGIDWICVSPKAG---------------CDLKIKGGQEL--KLVFPQVNVSPENYI 164
              P+G+  +C SPK G               C +K    + +    + P+V  S  N  
Sbjct: 130 RSLPKGVFIVC-SPKVGKTGYNKIREDLLPQVCAVKFIISKNIIEYSIIPEVGQSAYNIP 188

Query: 165 GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            F     S+   D     EN  LA+    ++   RLS+Q HKF+GI
Sbjct: 189 VF---VQSMDQNDKKLNAENNELAVKLALES-GARLSLQIHKFLGI 230


>gi|160875275|ref|YP_001554591.1| radical activating enzyme [Shewanella baltica OS195]
 gi|160860797|gb|ABX49331.1| radical activating enzyme [Shewanella baltica OS195]
 gi|315267469|gb|ADT94322.1| Radical SAM domain protein [Shewanella baltica OS678]
          Length = 222

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 106/229 (46%), Gaps = 32/229 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58
           Y + E+F T+QGEG   G  A+F R  GC +   W   +Q  D L    +      + + 
Sbjct: 3   YPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEVN-KVTPEQVITVD 61

Query: 59  GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
           GT  GR+  D  A  +   +       R+ V+TGGEP +     L + L+ +GF   +ET
Sbjct: 62  GTI-GRW-ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLRELTETLHSQGFATQIET 119

Query: 119 NGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENYI------- 164
           +GT +     D W+ VSPK    + +KGG + L     + N     ++ EN+I       
Sbjct: 120 SGTFDINCADDTWVTVSPK----VNMKGGYKVLAQALNRANEIKHPIATENHIAELDELL 175

Query: 165 -GFDF--ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            G D   +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 176 QGIDISTKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221


>gi|240127528|ref|ZP_04740189.1| hypothetical protein NgonS_02574 [Neisseria gonorrhoeae SK-93-1035]
 gi|268685904|ref|ZP_06152766.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268626188|gb|EEZ58588.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 212

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 103/227 (45%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 54  TFGMMSLSDILGR---LKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I+   E+++      V+  + +GF  + ER     
Sbjct: 111 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDAVGFCENMERKIRAH 164

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
            + L P   DG     +T   I      P     W+LSVQTHK+ GI
Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211


>gi|117620682|ref|YP_856352.1| radical activating enzyme [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117562089|gb|ABK39037.1| radical activating enzyme [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 237

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 105/238 (44%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54
           Y I EIF T+QGEG   G  A+F R  GC +            C +CDT           
Sbjct: 17  YPINEIFQTIQGEGVFTGLPAIFVRLQGCPV-----------GCPWCDTRHTWVVDPARE 65

Query: 55  VGIQGTKGGRYNVDQLADLIEEQWITGEK----EGRYCVLTGGEPLLQVDVPLIQALNKR 110
           VG+Q         D  + +  EQ +   +    + R+ V+TGGEP L     L  AL + 
Sbjct: 66  VGVQAVLDCSNESDGWSKMSTEQILASFQQLGYQARHVVITGGEPCLYDLQDLSAALIEA 125

Query: 111 GFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
           G+++ +ET+GT E       W+ VSPK    + +KGG  L ++   +  + E       E
Sbjct: 126 GYQVQIETSGTSEIQTHEQTWVTVSPK----INMKGG--LPVLVSALERANEIKHPVATE 179

Query: 170 RFSLQPMDGPF----LEENTNLAISYCFQNPK-------------WRLSVQTHKFIGI 210
           R  ++ +D       L EN  +A+    Q P+             WRLS+QTHK++ I
Sbjct: 180 RH-VEELDALLATARLRENVVIALQPISQKPRATQLAMTTCIARNWRLSIQTHKYLDI 236


>gi|62181454|ref|YP_217871.1| hypothetical protein SC2884 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62129087|gb|AAX66790.1| putative Organic radical activating enzymes [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322715938|gb|EFZ07509.1| Radical SAM [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 223

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 104/240 (43%), Gaps = 53/240 (22%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLW---SGREQDRLSAQCRFC 50
           Y I E+F TLQGEG   G  A+F R  GC          + W   S RE    S   +  
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTK 62

Query: 51  DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110
           ++D       K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K 
Sbjct: 63  ESD-------KWGAASSEDLLAVINRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKS 111

Query: 111 GFEIAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQEL---------KLVFPQVNV 158
           GF   +ET+GT E    P    W+ VSPK    + ++GG ++         ++  P   V
Sbjct: 112 GFSCQIETSGTHEVRCTPN--TWVTVSPK----VNMRGGYDVLSQALERANEIKHPVGRV 165

Query: 159 SPENYIGFDFERFS--------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                +G      S        LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 166 RDIEALGELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|26249173|ref|NP_755213.1| hypothetical protein c3335 [Escherichia coli CFT073]
 gi|91212137|ref|YP_542123.1| hypothetical protein UTI89_C3140 [Escherichia coli UTI89]
 gi|110642915|ref|YP_670645.1| hypothetical protein ECP_2755 [Escherichia coli 536]
 gi|117625003|ref|YP_853991.1| hypothetical protein APECO1_3756 [Escherichia coli APEC O1]
 gi|191171179|ref|ZP_03032729.1| conserved hypothetical protein [Escherichia coli F11]
 gi|215488094|ref|YP_002330525.1| hypothetical protein E2348C_3044 [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218559762|ref|YP_002392675.1| hypothetical protein ECS88_3041 [Escherichia coli S88]
 gi|218690896|ref|YP_002399108.1| hypothetical protein ECED1_3225 [Escherichia coli ED1a]
 gi|218701268|ref|YP_002408897.1| hypothetical protein ECIAI39_2968 [Escherichia coli IAI39]
 gi|227888313|ref|ZP_04006118.1| radical SAM domain protein [Escherichia coli 83972]
 gi|237706601|ref|ZP_04537082.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|300976266|ref|ZP_07173363.1| radical SAM domain protein [Escherichia coli MS 200-1]
 gi|300976766|ref|ZP_07173583.1| radical SAM domain protein [Escherichia coli MS 45-1]
 gi|301027570|ref|ZP_07190901.1| radical SAM domain protein [Escherichia coli MS 69-1]
 gi|301049468|ref|ZP_07196426.1| radical SAM domain protein [Escherichia coli MS 185-1]
 gi|306812345|ref|ZP_07446543.1| hypothetical protein ECNC101_10539 [Escherichia coli NC101]
 gi|312964958|ref|ZP_07779198.1| uncharacterized protein ygcF [Escherichia coli 2362-75]
 gi|331658886|ref|ZP_08359828.1| putative Organic radical activating enzyme [Escherichia coli TA206]
 gi|26109580|gb|AAN81783.1|AE016765_185 Hypothetical protein ygcF [Escherichia coli CFT073]
 gi|50250397|emb|CAG25841.1| hypothetical protein ygcF [Escherichia coli]
 gi|91073711|gb|ABE08592.1| hypothetical protein YgcF [Escherichia coli UTI89]
 gi|110344507|gb|ABG70744.1| hypothetical protein YgcF [Escherichia coli 536]
 gi|115514127|gb|ABJ02202.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|190908479|gb|EDV68068.1| conserved hypothetical protein [Escherichia coli F11]
 gi|215266166|emb|CAS10592.1| predicted protein [Escherichia coli O127:H6 str. E2348/69]
 gi|218366531|emb|CAR04284.1| conserved hypothetical protein [Escherichia coli S88]
 gi|218371254|emb|CAR19087.1| conserved hypothetical protein [Escherichia coli IAI39]
 gi|218428460|emb|CAR09385.2| conserved hypothetical protein [Escherichia coli ED1a]
 gi|222034465|emb|CAP77207.1| Uncharacterized protein ygcF [Escherichia coli LF82]
 gi|226899641|gb|EEH85900.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227834582|gb|EEJ45048.1| radical SAM domain protein [Escherichia coli 83972]
 gi|281179780|dbj|BAI56110.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|294493229|gb|ADE91985.1| conserved hypothetical protein [Escherichia coli IHE3034]
 gi|300298699|gb|EFJ55084.1| radical SAM domain protein [Escherichia coli MS 185-1]
 gi|300308611|gb|EFJ63131.1| radical SAM domain protein [Escherichia coli MS 200-1]
 gi|300394899|gb|EFJ78437.1| radical SAM domain protein [Escherichia coli MS 69-1]
 gi|300409952|gb|EFJ93490.1| radical SAM domain protein [Escherichia coli MS 45-1]
 gi|305854383|gb|EFM54821.1| hypothetical protein ECNC101_10539 [Escherichia coli NC101]
 gi|307554747|gb|ADN47522.1| conserved hypothetical protein [Escherichia coli ABU 83972]
 gi|307625657|gb|ADN69961.1| hypothetical protein UM146_02700 [Escherichia coli UM146]
 gi|312290514|gb|EFR18394.1| uncharacterized protein ygcF [Escherichia coli 2362-75]
 gi|312947301|gb|ADR28128.1| hypothetical protein NRG857_13575 [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315289297|gb|EFU48692.1| radical SAM domain protein [Escherichia coli MS 110-3]
 gi|315293738|gb|EFU53090.1| radical SAM domain protein [Escherichia coli MS 153-1]
 gi|315298732|gb|EFU57986.1| radical SAM domain protein [Escherichia coli MS 16-3]
 gi|320194912|gb|EFW69541.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli
           WV_060327]
 gi|323188807|gb|EFZ74092.1| hypothetical protein ECRN5871_3230 [Escherichia coli RN587/1]
 gi|323951009|gb|EGB46885.1| queuosine biosynthesis protein QueE [Escherichia coli H252]
 gi|323957215|gb|EGB52939.1| queuosine biosynthesis protein QueE [Escherichia coli H263]
 gi|324005736|gb|EGB74955.1| radical SAM domain protein [Escherichia coli MS 57-2]
 gi|324015485|gb|EGB84704.1| radical SAM domain protein [Escherichia coli MS 60-1]
 gi|330908805|gb|EGH37319.1| queuosine Biosynthesis QueE Radical SAM [Escherichia coli AA86]
 gi|331053468|gb|EGI25497.1| putative Organic radical activating enzyme [Escherichia coli TA206]
          Length = 223

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 102/237 (43%), Gaps = 47/237 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I E+F TLQGEG   G  A+F R  GC          + W   E   +S       T 
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
               +  K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K GF 
Sbjct: 63  ----ESDKWGAASSEDLLAVIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114

Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168
             +ET+GT E    P    W+ VSPK    L ++GG E+     +     ++ +G   D 
Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYEVLSQALERANEIKHPVGRVRDI 168

Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E                 +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222


>gi|124024647|ref|YP_001018954.1| organic radical activating protein [Prochlorococcus marinus str.
           MIT 9303]
 gi|123964933|gb|ABM79689.1| possible organic radical activating enzyme [Prochlorococcus marinus
           str. MIT 9303]
          Length = 226

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 98/237 (41%), Gaps = 48/237 (20%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F ++QGEG H GR A F R +GC++            C +CDT           + 
Sbjct: 7   VVETFHSIQGEGAHVGRSAFFIRLAGCDV-----------GCSWCDTKH-SWNSRNHPQI 54

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG-------FEIAVET 118
            V+QLA    E     +    + VLTGGEPL     PL +AL++           I +ET
Sbjct: 55  AVEQLA---VETATAAKNGAAFVVLTGGEPLQHNIAPLCEALHRATETNPDGPLPIHLET 111

Query: 119 NGTIEPPQGIDWICVSPK----------AGC-DLKI----KGGQELKLVFPQVNVSPENY 163
           +G  +      WI +SPK          A C +LK+    +G         Q  ++    
Sbjct: 112 SGVNQLSGVPTWITLSPKRHAPPRTDLLAACHELKVVVHERGDLNFAESMAQAALAARKN 171

Query: 164 IGFDFERFS---------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                 R S         LQP  G        LA  +   +P WRLS+QTHK++GIR
Sbjct: 172 DDASQSRLSNASKEPLLFLQP--GWATTTGQQLAFEHVQSHPHWRLSMQTHKWLGIR 226


>gi|156932742|ref|YP_001436658.1| hypothetical protein ESA_00531 [Cronobacter sakazakii ATCC BAA-894]
 gi|156530996|gb|ABU75822.1| hypothetical protein ESA_00531 [Cronobacter sakazakii ATCC BAA-894]
          Length = 223

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 103/242 (42%), Gaps = 57/242 (23%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------- 53
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWETLADRE 51

Query: 54  ---FVGIQGTKG----GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
              F  I  TK     G  + + L   IE Q  T     R+ V+TGGEP +   +PL + 
Sbjct: 52  VSLFSIIAKTKESDKWGAASPEDLLAAIERQAYTA----RHVVITGGEPCIHDLLPLTEL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIKGGQEL---------KLVFP-- 154
           L   G+   +ET+GT E       W+ VSPK    + ++GG E+         ++  P  
Sbjct: 108 LEAHGYSCQIETSGTHEVRCTTGTWVTVSPK----VNMRGGYEVLDQALMRADEIKHPVG 163

Query: 155 ---QVNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
               +    E       ER    +LQP+     E+ T L I  C     WRLS+QTHK++
Sbjct: 164 RMRDIEALDELLARLHDERQRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYL 220

Query: 209 GI 210
            I
Sbjct: 221 NI 222


>gi|326336650|ref|ZP_08202818.1| GntS protein [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691120|gb|EGD33091.1| GntS protein [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 205

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 47/222 (21%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F T+QGEG + G  A F R +GCN+            C +CD      +      +
Sbjct: 13  LMESFYTIQGEGFYKGTAAYFIRLAGCNV-----------GCHWCDVK----ESWDASIH 57

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
            +  +  ++EE +    K  +  ++TGGEPL+    PL + L  +G    +ET+G   P 
Sbjct: 58  TLVPIKTMVEEAF----KFSKIAIITGGEPLMYNLDPLTELLRSKGIRTHIETSGA-HPL 112

Query: 126 QGI-DWICVSPKAG---CDLKIKGGQELKLVFPQVNVSPENYIGFDF---ERFS------ 172
            G+ DWIC+SPK          +   ELK++          Y   DF   E  S      
Sbjct: 113 TGVWDWICLSPKKNKRPLPPIHQKANELKMII---------YNQHDFLFAEEMSVLTRTD 163

Query: 173 ----LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               LQP +    E+     + Y  ++P+W++S+Q HK++ I
Sbjct: 164 CIRYLQP-EWSRREKMIPKMVEYVMEHPQWKISLQMHKYLNI 204


>gi|292572231|gb|ADE30146.1| Organic radical activating enzyme [Rickettsia prowazekii Rp22]
          Length = 225

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 42/226 (18%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           ++ IF T+QGEG   G  ++F R  GCNL            C FCDT+F   +       
Sbjct: 20  VQSIFKTIQGEGIFVGYPSIFIRLGGCNLA-----------CNFCDTEFEDFK-----LI 63

Query: 66  NVDQLADLIEEQWITGE--KEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122
           ++DQ+ + ++   +  +  K     V+TGGEP+ Q    L Q L  + F++ +ETNGT+ 
Sbjct: 64  DIDQILNKVKNLSLNSKNAKTINLVVITGGEPMRQPIGLLCQKLLDQDFKVQIETNGTLY 123

Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN----VSPENYI-----------GF 166
              P+ +  +C SPK G     K  ++L    PQ++    +  +N +            +
Sbjct: 124 RSLPKEVFIVC-SPKVGKTGYNKIREDL---LPQISAVKFIISKNIVEYSIIPEVGQSAY 179

Query: 167 DFERF--SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           D   F  S+   D     EN  LA+    ++   RLS+QTHKF+GI
Sbjct: 180 DIPVFVQSMDQNDKRLNNENNELAVKLALES-GARLSLQTHKFLGI 224


>gi|218438303|ref|YP_002376632.1| radical SAM protein [Cyanothece sp. PCC 7424]
 gi|218171031|gb|ACK69764.1| Radical SAM domain protein [Cyanothece sp. PCC 7424]
          Length = 210

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 95/220 (43%), Gaps = 37/220 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I E F ++QGEG   G  A F R  GC+++           C +CD         +  
Sbjct: 16  YPIVETFHSVQGEGAWTGVSAFFIRLGGCDVY-----------CPWCDQK-ESWNAKRHP 63

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
             +VD LA   +             ++TGGEPL+    PL   L K G ++ +ET+G+  
Sbjct: 64  HQSVDTLAQAAKM------ANPAIVIITGGEPLMHDLDPLTTELKKLGLQVHLETSGSHP 117

Query: 124 PPQGIDWICVSPKAG-----------CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
                DW+  SPK              +LK+    E  L   +V  +  +     +    
Sbjct: 118 FSGNFDWVTFSPKPYKKPHDSIYNYVNELKVVVANEEDLHMAEVQAAKLSLTVIKY---- 173

Query: 173 LQP-MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           LQP  + P  +E   L   +  ++P+WR+S+QTHKF+ +R
Sbjct: 174 LQPEWNTPNSKE---LIFDFVLKHPQWRISLQTHKFLNVR 210


>gi|15604457|ref|NP_220975.1| hypothetical protein RP607 [Rickettsia prowazekii str. Madrid E]
 gi|3861151|emb|CAA15051.1| unknown [Rickettsia prowazekii]
          Length = 234

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 42/226 (18%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           ++ IF T+QGEG   G  ++F R  GCNL            C FCDT+F   +       
Sbjct: 29  VQSIFKTIQGEGIFVGYPSIFIRLGGCNLA-----------CNFCDTEFEDFK-----LI 72

Query: 66  NVDQLADLIEEQWITGE--KEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122
           ++DQ+ + ++   +  +  K     V+TGGEP+ Q    L Q L  + F++ +ETNGT+ 
Sbjct: 73  DIDQILNKVKNLSLNSKNAKTINLVVITGGEPMRQPIGLLCQKLLDQDFKVQIETNGTLY 132

Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN----VSPENYI-----------GF 166
              P+ +  +C SPK G     K  ++L    PQ++    +  +N +            +
Sbjct: 133 RSLPKEVFIVC-SPKVGKTGYNKIREDL---LPQISAVKFIISKNIVEYSIIPEVGQSAY 188

Query: 167 DFERF--SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           D   F  S+   D     EN  LA+    ++   RLS+QTHKF+GI
Sbjct: 189 DIPVFVQSMDQNDKRLNNENNELAVKLALES-GARLSLQTHKFLGI 233


>gi|222475965|ref|YP_002564486.1| Radical SAM domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222454336|gb|ACM58600.1| Radical SAM domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 258

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 71/132 (53%), Gaps = 18/132 (13%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F +LQGEG  AG  +VF R SGCNL           +C FCD+     + T   R 
Sbjct: 23  INEVFYSLQGEGTLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPTGAWR- 70

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           +VD    +IEE  +   ++  + VLTGGEPL+  + + L++ L   G+   VETNGTI  
Sbjct: 71  DVDS---IIEE--VHSHEQANHVVLTGGEPLIHEESIELLERLAADGYHTTVETNGTIYR 125

Query: 125 PQGIDWICVSPK 136
              ID   +SPK
Sbjct: 126 DAPIDLASISPK 137


>gi|255531962|ref|YP_003092334.1| Radical SAM domain-containing protein [Pedobacter heparinus DSM
           2366]
 gi|255344946|gb|ACU04272.1| Radical SAM domain protein [Pedobacter heparinus DSM 2366]
          Length = 207

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 99/228 (43%), Gaps = 52/228 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           L  + E F T+QGEG + G+ A F R  GC++            C +CD     ++ +  
Sbjct: 11  LLPLMEEFYTIQGEGFNTGKAAYFIRLGGCDV-----------GCHWCD-----VKESWD 54

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              +    AD I  +       G+  V+TGGEPL+     L + L ++G    +ET+G  
Sbjct: 55  AELHPLTPADAIVAK--AESYPGKAVVITGGEPLIYNLDYLTRRLREKGILTFIETSGAY 112

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE----NYIGF---DFE------ 169
                 DWIC+SPK             K   P+ +++P       I F   DFE      
Sbjct: 113 PLSGDWDWICLSPK-------------KFKAPRPDITPYANELKVIVFNKSDFEWAEKYA 159

Query: 170 -------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                  +  LQP +    +E T L I Y   NPKW +S+QTHKF+ I
Sbjct: 160 ETVSANCKLYLQP-EWSKSKEITPLIIDYVMANPKWEISLQTHKFLNI 206


>gi|87123419|ref|ZP_01079270.1| possible organic radical activating enzyme [Synechococcus sp.
           RS9917]
 gi|86169139|gb|EAQ70395.1| possible organic radical activating enzyme [Synechococcus sp.
           RS9917]
          Length = 202

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 99/219 (45%), Gaps = 36/219 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F +LQGEG HAGR A F R  GC++            C +CDT           + 
Sbjct: 7   VVETFHSLQGEGLHAGRSAFFIRLGGCDV-----------GCSWCDTKH-SWPAEAHPKR 54

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTIEP 124
           +VD LA    E          + VLTGGEPL      L  A+ +     + +ET+G ++P
Sbjct: 55  SVDSLAAATAE---AAHAGAAFVVLTGGEPLHHQLDALTAAIRRICSLPVHLETSG-VDP 110

Query: 125 PQGI-DWICVSPK----------AGCD-LKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
             G  DW+ +SPK            CD LK+   +   L+F +V  +           + 
Sbjct: 111 LSGAPDWVTLSPKRHRPPRAEVLQACDELKVVVHEPADLLFAEVVATQAPQ-----ATWL 165

Query: 173 LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           LQP  G   E    LA      NP+WRLS+Q+HK++G+R
Sbjct: 166 LQP--GWSSEAGQELATDMVRGNPRWRLSLQSHKWLGVR 202


>gi|145639292|ref|ZP_01794898.1| predicted methyltransferase [Haemophilus influenzae PittII]
 gi|145271595|gb|EDK11506.1| predicted methyltransferase [Haemophilus influenzae PittII]
 gi|309751168|gb|ADO81152.1| Probable 7-cyano-7-deazaguanine (preQ0) synthesis protein QueE
           [Haemophilus influenzae R2866]
          Length = 211

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 104/220 (47%), Gaps = 35/220 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           ++I EIF +LQGEG + G  +VF RF  CNL            C +CDT +   +     
Sbjct: 13  FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 56

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           R++V Q+ + +           +  ++TGGEP +   +  L++     G+ +A+ETNG  
Sbjct: 57  RWSVSQILEKVR------SFSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175
             P  ID+I  SPK+    K     I    E+++V      S    I      + + L P
Sbjct: 111 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 170

Query: 176 --MDGP--FLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210
             +DG    LE  T L  ++     PKW+LS+QTHK IGI
Sbjct: 171 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGI 210


>gi|304408669|ref|ZP_07390290.1| Radical SAM domain protein [Shewanella baltica OS183]
 gi|307305498|ref|ZP_07585246.1| Radical SAM domain protein [Shewanella baltica BA175]
 gi|304352490|gb|EFM16887.1| Radical SAM domain protein [Shewanella baltica OS183]
 gi|306911801|gb|EFN42226.1| Radical SAM domain protein [Shewanella baltica BA175]
          Length = 222

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 104/229 (45%), Gaps = 32/229 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ 58
           Y + E+F T+QGEG   G  A+F R  GC +   W   +Q  D L    +      + + 
Sbjct: 3   YPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEVN-KVTPEQVISVD 61

Query: 59  GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
           GT  GR+  D  A  +   +       R+ V+TGGEP +     L + L+ +GF   +ET
Sbjct: 62  GTI-GRW-ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLRELTETLHNQGFATQIET 119

Query: 119 NGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENYIG------ 165
           +GT +     D W+ VSPK    + +KGG + L     + N     ++ EN+I       
Sbjct: 120 SGTFDINCADDTWVTVSPK----VNMKGGYKVLTQALNRANEIKHPIATENHIAELDELL 175

Query: 166 ----FDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                  +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 176 QDIDISAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221


>gi|157825999|ref|YP_001493719.1| organic radical activating protein [Rickettsia akari str. Hartford]
 gi|157799957|gb|ABV75211.1| Organic radical activating enzyme [Rickettsia akari str. Hartford]
          Length = 225

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 106/224 (47%), Gaps = 38/224 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           ++ IF T+QGEG   G  A+F R  GCNL            C FCDT+F   +       
Sbjct: 20  VQSIFKTIQGEGLFVGGPAIFIRLGGCNLA-----------CNFCDTEFEDFK-----LV 63

Query: 66  NVDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122
           ++ ++ + +E   +  + E      V+TGGEP+ Q    L Q L  + F++ +ETNGT+ 
Sbjct: 64  DIVEILNKVESLALNSKNERAINLVVITGGEPMRQPIELLCQKLLDQDFKVQIETNGTLY 123

Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV------NVSPENYI------GFDFE 169
              P  +  IC SPKAG     K  ++L      V      N+   N+I       ++  
Sbjct: 124 RALPNEVYIIC-SPKAGKTGYSKIREDLLSQISAVKFIVAKNILEYNFIPEVGQTSYNIP 182

Query: 170 RFSLQPMDGP---FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            F +QPMD       +EN  LA+    ++   RLS+QTHK +GI
Sbjct: 183 VF-IQPMDQNNQRLNDENNELAVKLALES-GARLSLQTHKILGI 224


>gi|330431519|gb|AEC16578.1| molybdenum cofactor biosynthesis protein A [Gallibacterium anatis
           UMN179]
          Length = 203

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 102/229 (44%), Gaps = 53/229 (23%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y+I EIF +LQGEG + G  AVF RF  CNL            C +CDTD+         
Sbjct: 5   YAIVEIFESLQGEGFNTGMPAVFIRFGKCNL-----------ACPWCDTDYQTF-----S 48

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
              + Q+AD +           +  ++TGGEP +Q ++  L+      G+ +++ETNG  
Sbjct: 49  LMTLQQIADQV------TAFSAKNIIITGGEPTIQPNLEKLLSYFKTLGYFLSIETNGLK 102

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSP---ENYIGFDFERFSLQ 174
             P  ID+I  SPK     K     I    E+++V    N+     E     + + + L 
Sbjct: 103 PVPPQIDYIATSPKRLYRHKYQQRCITHADEVRIVNDDENILSFCREIAKKIEAKHYFLS 162

Query: 175 PMD--GPF-----------LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P +  G             L ENT++         KW+LS+QTHK +GI
Sbjct: 163 PCEQQGEMNLLDTIRKLGQLNENTDI---------KWQLSIQTHKLVGI 202


>gi|145631238|ref|ZP_01787011.1| predicted organic radical activating enzyme [Haemophilus influenzae
           R3021]
 gi|144983165|gb|EDJ90660.1| predicted organic radical activating enzyme [Haemophilus influenzae
           R3021]
          Length = 211

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 104/220 (47%), Gaps = 35/220 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           ++I EIF +LQGEG + G  +VF RF  CNL            C +CDT +   +     
Sbjct: 13  FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 56

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           R++V Q+ + +           +  ++TGGEP +   +  L++     G+ +A+ETNG  
Sbjct: 57  RWSVSQILEKVR------SFSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175
             P  ID+I  SPK+    K     I    E+++V      S    I      + + L P
Sbjct: 111 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 170

Query: 176 --MDGP--FLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210
             +DG    LE  T L  ++     PKW+LS+QTHK IGI
Sbjct: 171 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGI 210


>gi|16273111|ref|NP_439345.1| hypothetical protein HI1189 [Haemophilus influenzae Rd KW20]
 gi|68249735|ref|YP_248847.1| organic radical activating protein [Haemophilus influenzae
           86-028NP]
 gi|148826202|ref|YP_001290955.1| organic radical activating protein [Haemophilus influenzae PittEE]
 gi|229844856|ref|ZP_04464994.1| predicted organic radical activating enzyme [Haemophilus influenzae
           6P18H1]
 gi|229846220|ref|ZP_04466332.1| predicted organic radical activating enzyme [Haemophilus influenzae
           7P49H1]
 gi|260581110|ref|ZP_05848931.1| organic radical activating protein [Haemophilus influenzae RdAW]
 gi|260582119|ref|ZP_05849913.1| organic radical activating protein [Haemophilus influenzae NT127]
 gi|329124080|ref|ZP_08252627.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Haemophilus aegyptius ATCC 11116]
 gi|1723816|sp|P45097|Y1189_HAEIN RecName: Full=7-carboxy-7-deazaguanine synthase homolog
 gi|1574116|gb|AAC22842.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|68057934|gb|AAX88187.1| predicted organic radical activating enzyme [Haemophilus influenzae
           86-028NP]
 gi|148716362|gb|ABQ98572.1| predicted organic radical activating enzyme [Haemophilus influenzae
           PittEE]
 gi|229811224|gb|EEP46941.1| predicted organic radical activating enzyme [Haemophilus influenzae
           7P49H1]
 gi|229812237|gb|EEP47928.1| predicted organic radical activating enzyme [Haemophilus influenzae
           6P18H1]
 gi|260092239|gb|EEW76181.1| organic radical activating protein [Haemophilus influenzae RdAW]
 gi|260094751|gb|EEW78645.1| organic radical activating protein [Haemophilus influenzae NT127]
 gi|309973347|gb|ADO96548.1| Probable 7-cyano-7-deazaguanine (preQ0) synthesis protein QueE
           [Haemophilus influenzae R2846]
 gi|327467505|gb|EGF13003.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Haemophilus aegyptius ATCC 11116]
          Length = 211

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 104/220 (47%), Gaps = 35/220 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           ++I EIF +LQGEG + G  +VF RF  CNL            C +CDT +   +     
Sbjct: 13  FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 56

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           R++V Q+ + +           +  ++TGGEP +   +  L++     G+ +A+ETNG  
Sbjct: 57  RWSVSQILEKVR------SFSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175
             P  ID+I  SPK+    K     I    E+++V      S    I      + + L P
Sbjct: 111 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 170

Query: 176 --MDGP--FLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210
             +DG    LE  T L  ++     PKW+LS+QTHK IGI
Sbjct: 171 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGI 210


>gi|145633081|ref|ZP_01788813.1| predicted methyltransferase [Haemophilus influenzae 3655]
 gi|145637058|ref|ZP_01792721.1| predicted methyltransferase [Haemophilus influenzae PittHH]
 gi|319897344|ref|YP_004135540.1| methyltransferase [Haemophilus influenzae F3031]
 gi|144986307|gb|EDJ92886.1| predicted methyltransferase [Haemophilus influenzae 3655]
 gi|145269712|gb|EDK09652.1| predicted methyltransferase [Haemophilus influenzae PittHH]
 gi|317432849|emb|CBY81214.1| Predicted methyltransferase [Haemophilus influenzae F3031]
          Length = 209

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 104/220 (47%), Gaps = 35/220 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           ++I EIF +LQGEG + G  +VF RF  CNL            C +CDT +   +     
Sbjct: 11  FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           R++V Q+ + +           +  ++TGGEP +   +  L++     G+ +A+ETNG  
Sbjct: 55  RWSVSQILEKVRSF------SSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 108

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175
             P  ID+I  SPK+    K     I    E+++V      S    I      + + L P
Sbjct: 109 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 168

Query: 176 --MDGP--FLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210
             +DG    LE  T L  ++     PKW+LS+QTHK IGI
Sbjct: 169 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGI 208


>gi|260599124|ref|YP_003211695.1| hypothetical protein CTU_33320 [Cronobacter turicensis z3032]
 gi|260218301|emb|CBA33277.1| Uncharacterized protein ygcF [Cronobacter turicensis z3032]
          Length = 223

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 104/242 (42%), Gaps = 57/242 (23%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------- 53
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWETLADRE 51

Query: 54  ---FVGIQGTKG----GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
              F  I  TK     G  + ++L   IE Q  T     R+ V+TGGEP +   +PL + 
Sbjct: 52  VSLFSIIAKTKESDKWGSASPEELLAAIERQAYTA----RHVVITGGEPCIHDLLPLTEL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIKGGQEL---------KLVFP-- 154
           L   G+   +ET+GT E       W+ VSPK    + ++GG E+         ++  P  
Sbjct: 108 LEAHGYSCQIETSGTHEVRCTTGTWVTVSPK----VNMRGGYEVLDQALMRADEIKHPVG 163

Query: 155 ---QVNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
               +    E       ER    +LQP+     ++ T L I  C     WRLS+QTHK++
Sbjct: 164 RMRDIEALDELLARLHDERQRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYL 220

Query: 209 GI 210
            I
Sbjct: 221 NI 222


>gi|312887506|ref|ZP_07747102.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311299994|gb|EFQ77067.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 207

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 100/215 (46%), Gaps = 26/215 (12%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           L  + E F T+QGEG + G+ A F R  GC++            C +CD     ++ +  
Sbjct: 11  LLPLMEEFYTIQGEGYNTGKAAYFIRLGGCDV-----------GCHWCD-----VKESWD 54

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              +    +D I +  +  +  G+  V+TGGEPL+     L   L ++G +  +ET+G  
Sbjct: 55  ASIHPLTPSDTIVDNAV--KYPGKAVVVTGGEPLIYNLDYLTAQLQQKGIKTFIETSGAY 112

Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVS-PENYIGFDFE--RFSLQP 175
                 DWIC+SP   KA          ELK +VF + + +  E Y        +  LQP
Sbjct: 113 PLSGSWDWICLSPKKFKAPSASVAPYAHELKVIVFNKSDFAWAEQYAALVSPGCKLYLQP 172

Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +    +E   L + Y   NP+W +S+QTHK++ I
Sbjct: 173 -EWSKSKEMIPLIVDYVMNNPQWEISLQTHKYLNI 206


>gi|239996401|ref|ZP_04716925.1| radical activating enzyme [Alteromonas macleodii ATCC 27126]
          Length = 224

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 104/238 (43%), Gaps = 43/238 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF------ 54
           M   +I E+F T+QGEG H G  ++F R  GC +            C +CDT        
Sbjct: 1   MSTLNINEMFETIQGEGAHTGIPSIFVRLQGCPV-----------GCPWCDTKHTWEIKP 49

Query: 55  --------VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                   V  +G +   Y +     L+ E    G    ++ V+TGGEP +    PL   
Sbjct: 50  DLSVSPQAVITKGEESETYFISSEEALLAEFGKQG-YVAKHVVITGGEPCMYDLRPLTSL 108

Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSP----KAGCDL---------KIKGGQELKLV 152
           L+  G+   +ET+GT E       ++ VSP    K G D+         +IK    ++  
Sbjct: 109 LHDNGYTTQIETSGTFEVLCDTRTYVTVSPKINMKGGYDVLVSALERANEIKHPIAMQKH 168

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             +++    N    D ++  LQP+     +  T LA+  C +   WRLS+QTHK+IGI
Sbjct: 169 IDELDALLANVSSLDGKQVCLQPISQQ--KRATELAVRTCIER-NWRLSLQTHKYIGI 223


>gi|193071786|ref|ZP_03052680.1| conserved hypothetical protein [Escherichia coli E110019]
 gi|300906700|ref|ZP_07124387.1| radical SAM domain protein [Escherichia coli MS 84-1]
 gi|300920372|ref|ZP_07136808.1| radical SAM domain protein [Escherichia coli MS 115-1]
 gi|301304544|ref|ZP_07210654.1| radical SAM domain protein [Escherichia coli MS 124-1]
 gi|192954902|gb|EDV85411.1| conserved hypothetical protein [Escherichia coli E110019]
 gi|300401505|gb|EFJ85043.1| radical SAM domain protein [Escherichia coli MS 84-1]
 gi|300412622|gb|EFJ95932.1| radical SAM domain protein [Escherichia coli MS 115-1]
 gi|300840148|gb|EFK67908.1| radical SAM domain protein [Escherichia coli MS 124-1]
 gi|315256635|gb|EFU36603.1| radical SAM domain protein [Escherichia coli MS 85-1]
 gi|323172921|gb|EFZ58552.1| hypothetical protein ECLT68_2322 [Escherichia coli LT-68]
          Length = 223

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 103/238 (43%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I E+F TLQGEG   G  A+F R  GC          + W   E   +S       T 
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
               +  K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K GF 
Sbjct: 63  ----ESDKWGAASSEDLLAVISRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114

Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVNVSPENYIG--FD 167
             +ET+GT E    P    W+ VSPK    L ++GG E L     + N   ++ +G   D
Sbjct: 115 CQIETSGTHEVRCTPNT--WVTVSPK----LNMRGGYEVLSQALERAN-EIKHPVGRVRD 167

Query: 168 FERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            E                 +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|145627830|ref|ZP_01783631.1| predicted methyltransferase [Haemophilus influenzae 22.1-21]
 gi|144979605|gb|EDJ89264.1| predicted methyltransferase [Haemophilus influenzae 22.1-21]
          Length = 217

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 104/220 (47%), Gaps = 35/220 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           ++I EIF +LQGEG + G  +VF RF  CNL            C +CDT +   +     
Sbjct: 19  FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           R++V Q+ + +           +  ++TGGEP +   +  L++     G+ +A+ETNG  
Sbjct: 63  RWSVSQILEKVRSF------SSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 116

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175
             P  ID+I  SPK+    K     I    E+++V      S    I      + + L P
Sbjct: 117 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 176

Query: 176 --MDGP--FLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210
             +DG    LE  T L  ++     PKW+LS+QTHK IGI
Sbjct: 177 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGI 216


>gi|237729740|ref|ZP_04560221.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908346|gb|EEH94264.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 223

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 104/233 (44%), Gaps = 39/233 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I E+F TLQGEG   G  A+F R  GC          + W   E   +S       T 
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLEDREVSLYSILAKTK 62

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
               +  K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K GF 
Sbjct: 63  ----ESDKWGAASSEDLLAVISRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKNGFS 114

Query: 114 IAVETNGTIE---PPQGIDWICVSPKA----GCDL---KIKGGQELKLVFPQV-NVSPEN 162
             +ET+GT E    P    W+ VSPK     G D+    ++   E+K    +V ++   +
Sbjct: 115 CQIETSGTHEVRCTPNT--WVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALD 172

Query: 163 ----YIGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                +  D  R  +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 173 ELLATLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222


>gi|300937751|ref|ZP_07152551.1| radical SAM domain protein [Escherichia coli MS 21-1]
 gi|300457230|gb|EFK20723.1| radical SAM domain protein [Escherichia coli MS 21-1]
          Length = 223

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 102/237 (43%), Gaps = 47/237 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I EIF TLQGEG   G  A+F R  GC          + W   E   +S       T 
Sbjct: 3   YPINEIFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
               +  K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K GF 
Sbjct: 63  ----ESDKWGAASSEDLLAVIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114

Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168
             +ET+GT E    P    W+ VSPK    L ++GG E+     +     ++ +G   D 
Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYEVLSQALERANEIKHPVGRVRDI 168

Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E                 +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|240013450|ref|ZP_04720363.1| hypothetical protein NgonD_02169 [Neisseria gonorrhoeae DGI18]
 gi|240015889|ref|ZP_04722429.1| hypothetical protein NgonFA_01772 [Neisseria gonorrhoeae FA6140]
 gi|240080029|ref|ZP_04724572.1| hypothetical protein NgonF_01775 [Neisseria gonorrhoeae FA19]
 gi|240112239|ref|ZP_04726729.1| hypothetical protein NgonM_01409 [Neisseria gonorrhoeae MS11]
 gi|240117266|ref|ZP_04731328.1| hypothetical protein NgonPID_02214 [Neisseria gonorrhoeae PID1]
 gi|240120521|ref|ZP_04733483.1| hypothetical protein NgonPI_01854 [Neisseria gonorrhoeae PID24-1]
 gi|240122820|ref|ZP_04735776.1| hypothetical protein NgonP_02565 [Neisseria gonorrhoeae PID332]
 gi|240125015|ref|ZP_04737901.1| hypothetical protein NgonSK_02119 [Neisseria gonorrhoeae SK-92-679]
 gi|254493044|ref|ZP_05106215.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268598297|ref|ZP_06132464.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268602962|ref|ZP_06137129.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268681434|ref|ZP_06148296.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268683601|ref|ZP_06150463.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|226512084|gb|EEH61429.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268582428|gb|EEZ47104.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268587093|gb|EEZ51769.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268621718|gb|EEZ54118.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268623885|gb|EEZ56285.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
          Length = 212

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 103/227 (45%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 54  TFGMMSLSDILG---CLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I+   E+++      V+  + +GF  + ER     
Sbjct: 111 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDVVGFCENMERKIRAH 164

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
            + L P   DG     +T   I      P     W+LSVQTHK+ GI
Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211


>gi|284164674|ref|YP_003402953.1| radical SAM protein [Haloterrigena turkmenica DSM 5511]
 gi|284014329|gb|ADB60280.1| Radical SAM domain protein [Haloterrigena turkmenica DSM 5511]
          Length = 274

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/132 (38%), Positives = 70/132 (53%), Gaps = 19/132 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F +LQGEG  AG  +VF R SGCNL           +C FCD+     + T     
Sbjct: 35  INELFYSLQGEGTLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPTHAW-L 82

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            ++++   IE        +  + VLTGGEPL+  + V L++AL+ RG+   VETNGTI  
Sbjct: 83  GLEEILAEIESH------DADHVVLTGGEPLIHEESVALLEALDDRGYHTTVETNGTINR 136

Query: 125 PQGIDWICVSPK 136
              ID   +SPK
Sbjct: 137 DAPIDLASISPK 148


>gi|268596173|ref|ZP_06130340.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268549961|gb|EEZ44980.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
          Length = 267

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 103/227 (45%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 68  YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 109

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 110 -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 165

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I+   E+++      V+  + +GF  + ER     
Sbjct: 166 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDVVGFCENMERKIRAH 219

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
            + L P   DG     +T   I      P     W+LSVQTHK+ GI
Sbjct: 220 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 266


>gi|271501834|ref|YP_003334860.1| Radical SAM domain-containing protein [Dickeya dadantii Ech586]
 gi|270345389|gb|ACZ78154.1| Radical SAM domain protein [Dickeya dadantii Ech586]
          Length = 223

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 109/236 (46%), Gaps = 45/236 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54
           Y I E+F TLQGEG   G  AVF R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGFFTGVPAVFIRLQGCPV-----------GCSWCDTKHTWDTLPERQ 51

Query: 55  -----VGIQGTKGGRYNVDQLADLIEEQWITGE-KEGRYCVLTGGEPLLQVDVPLIQALN 108
                V ++  +   ++   +  L+++  IT +    R+ V+TGGEP +    PL QAL 
Sbjct: 52  ISLAEVLVKRGESDAWSSSSVEALLQQ--ITQQGYSARHVVITGGEPCIHDLTPLTQALE 109

Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPK-------AGCDLKIKGGQELKL-VFPQVNVS 159
           ++GF   +ET+GT E       W+ VSPK       A  D  ++   E+K  V  + ++ 
Sbjct: 110 QQGFSTQIETSGTHEVRCSSGCWVTVSPKVNMRGGLAVLDQALQRADEIKHPVARERDIE 169

Query: 160 P-ENYIG-FDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             E  +   D ++    +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 170 ALEGLLARLDDDKVRVVALQPVSQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|301169927|emb|CBW29531.1| predicted organic radical activating enzyme [Haemophilus influenzae
           10810]
          Length = 209

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 104/220 (47%), Gaps = 35/220 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           ++I EIF +LQGEG + G  +VF RF  CNL            C +CDT +   +     
Sbjct: 11  FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           R++V Q+ + +           +  ++TGGEP +   +  L++     G+ +A+ETNG  
Sbjct: 55  RWSVSQILEKVRSF------SSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 108

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175
             P  ID+I  SPK+    K     I    E+++V      S    I      + + L P
Sbjct: 109 AIPAQIDYISTSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 168

Query: 176 --MDGP--FLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210
             +DG    LE  T L  ++     PKW+LS+QTHK IGI
Sbjct: 169 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGI 208


>gi|218709344|ref|YP_002416965.1| organic radical activating enzyme [Vibrio splendidus LGP32]
 gi|218322363|emb|CAV18509.1| Organic radical activating enzyme [Vibrio splendidus LGP32]
          Length = 222

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 106/246 (43%), Gaps = 63/246 (25%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y I E+F T+QGEG   G  AVF R   C +            C +CDT     Q  + 
Sbjct: 1   MYKINEMFETIQGEGVFTGVPAVFVRLQICPV-----------GCSWCDTK----QTWEA 45

Query: 63  GRYNVDQLADL------------IEEQWITGE--KEG---RYCVLTGGEPLLQVDVPLIQ 105
              +   L D+            I+ Q I  E  K+G   ++ V+TGGEP +   VPL +
Sbjct: 46  LPEDETSLGDIMVKTEDSPTWTAIDAQGIVNEYIKQGYTAKHIVITGGEPCIYDLVPLTE 105

Query: 106 ALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKI--------------------K 144
           A  + G    +ET+GT E     D W+ VSPK     K+                    K
Sbjct: 106 AFEQHGCRCQIETSGTSEVKATPDTWVTVSPKVSMKAKLDILDSALVRANEIKHPVGTGK 165

Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQT 204
             ++L  +  + +V PEN +       +LQP+     E  T L I  C +   WRLS+QT
Sbjct: 166 DIEQLDALIARADV-PENTV------IALQPISQK--ERATQLCIDTCIER-NWRLSIQT 215

Query: 205 HKFIGI 210
           HK++ I
Sbjct: 216 HKYLSI 221


>gi|257452357|ref|ZP_05617656.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R]
 gi|257465851|ref|ZP_05630162.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315917008|ref|ZP_07913248.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|317058900|ref|ZP_07923385.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R]
 gi|313684576|gb|EFS21411.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R]
 gi|313690883|gb|EFS27718.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 222

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 20/145 (13%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y + EIF ++ GEG  AG++A+F RF  CNL            C +CDT +   + +
Sbjct: 1   MPKYKVVEIFESINGEGKKAGQLALFIRFQYCNL-----------NCSYCDTKWANSKNS 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFEIAVET 118
                +++++  L +E+ I      +   LTGGEPLLQ D+  L++A +K + FEI +ET
Sbjct: 50  PFTWMSLEEILSLAKEKRI------KNITLTGGEPLLQTDIRSLLEAFSKEKQFEIEIET 103

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKI 143
           NG++ P +    I  SP    D K+
Sbjct: 104 NGSV-PLETFRNIENSPSFTIDYKL 127


>gi|124026869|ref|YP_001015984.1| putative organic radical activating protein [Prochlorococcus
           marinus str. NATL1A]
 gi|123961937|gb|ABM76720.1| possible organic radical activating enzyme [Prochlorococcus marinus
           str. NATL1A]
          Length = 213

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 94/223 (42%), Gaps = 35/223 (15%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F +LQGEG HAGR A F R + C +            C +CDT            +
Sbjct: 7   VVECFHSLQGEGEHAGRSAYFIRLASCKV-----------GCPWCDTK----DSWNSELH 51

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA-------LNKRGFEIAVET 118
               L DL  +     E+   + V+TGGEPL      L +        L K+   I +ET
Sbjct: 52  PQQSLIDLSTQTAKAQEEGAAFVVITGGEPLHHNLDDLCKEIRKSTLNLEKKSIPIHLET 111

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIK---GGQELK--------LVFPQVNVSPENYIGFD 167
           +G        DWI +SPK     ++      QELK        LVF +         G  
Sbjct: 112 SGVDMLSGKPDWITLSPKRHSPPRLDNLLSCQELKVVIQNAEDLVFAKTMADSIKNNGKI 171

Query: 168 FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             +  LQ   G   EE   LAI +   NP WRLS+QTHK++G+
Sbjct: 172 KPQLFLQA--GWENEEGQTLAIKFVKNNPDWRLSMQTHKWLGV 212


>gi|308050954|ref|YP_003914520.1| hypothetical protein Fbal_3247 [Ferrimonas balearica DSM 9799]
 gi|307633144|gb|ADN77446.1| conserved hypothetical protein [Ferrimonas balearica DSM 9799]
          Length = 224

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 106/236 (44%), Gaps = 47/236 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y + E+F T+QGEG H G  A+F R  GC          + W  +E  ++        T+
Sbjct: 6   YPVNELFETIQGEGVHTGVPAIFLRLQGCPVGCSWCDTKHTWDLQENRKVMLSDVLVKTE 65

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
              +  + G R    ++ DL   ++        + V+TGGEP +    PL +     G+ 
Sbjct: 66  ESVMWCSVGPR----EILDLCMSRYT-----ATHLVITGGEPCMYDLQPLCEVFEAEGYS 116

Query: 114 IAVETNGTIEPPQGID--WICVSPKAGCDLKIKGGQEL---------KLVFPQVNVSPEN 162
           I VET+GT  P    D  W+ VSPK    +K++GG  +         ++  P   V    
Sbjct: 117 IQVETSGTY-PVMVSDSAWVTVSPK----IKMRGGLSVLASAIDRADEIKHPVATVKDIE 171

Query: 163 YI--------GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +        G D  + +LQP+      + T LAI  C +   WRLSVQTHK++GI
Sbjct: 172 QLDELLTGSAGAD-AKVALQPISQK--PKATELAIRTCIKR-NWRLSVQTHKYLGI 223


>gi|148240798|ref|YP_001226185.1| organic radical activating protein [Synechococcus sp. WH 7803]
 gi|147849337|emb|CAK24888.1| Organic radical activating enzyme [Synechococcus sp. WH 7803]
          Length = 208

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 98/219 (44%), Gaps = 36/219 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F +LQGEG HAGR A F R +GC           S  C +CDT       +   R 
Sbjct: 13  VVETFHSLQGEGLHAGRSAFFIRLAGC-----------SVGCSWCDTKHSWPAESHPAR- 60

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTIEP 124
               L  +  E          + V+TGGEPL      L Q L K  G  + +ET+G ++P
Sbjct: 61  ---TLHSIATEAAAAASDGAAFVVITGGEPLHHNLDALAQTLRKICGLPLHLETSG-VDP 116

Query: 125 PQG-IDWICVSPKAGC-----------DLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
             G  DWI +SPK              +LK+   +   L+F +V  +           + 
Sbjct: 117 LSGNPDWITLSPKRHAPPRAELLSRCHELKVVVHEPADLLFAEVLSAQAPQAA-----WL 171

Query: 173 LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           LQP  G    E   LA+    ++ +WRLS+Q+HK++G+R
Sbjct: 172 LQP--GWESVEGQQLALDAARRDGRWRLSLQSHKWLGVR 208


>gi|331648502|ref|ZP_08349590.1| putative Organic radical activating enzyme [Escherichia coli M605]
 gi|331042249|gb|EGI14391.1| putative Organic radical activating enzyme [Escherichia coli M605]
          Length = 223

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 102/237 (43%), Gaps = 47/237 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I E+F TLQGEG   G  A+F R  GC          + W   E   +S       T 
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
               +  K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K GF 
Sbjct: 63  ----ESDKWGAASSEDLLVVIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114

Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168
             +ET+GT E    P    W+ VSPK    L ++GG E+     +     ++ +G   D 
Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYEVLSQALERANEIKHPVGRVRDI 168

Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E                 +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222


>gi|283780242|ref|YP_003370997.1| radical SAM domain-containing protein [Pirellula staleyi DSM 6068]
 gi|283438695|gb|ADB17137.1| Radical SAM domain protein [Pirellula staleyi DSM 6068]
          Length = 228

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 71/132 (53%), Gaps = 19/132 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E++ +LQGEG   G  +VF R SGCNL           +C FCDT F   Q  +G  +
Sbjct: 3   IAELYTSLQGEGRLTGTPSVFVRASGCNL-----------RCWFCDTPFTSWQ-PEGEDW 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           +++++   ++       K+  + V+TGGEP+L  + VPL Q L + G  I +ET GT+  
Sbjct: 51  SLEEIVHQVQ------AKQTSHVVITGGEPMLYSEMVPLTQELKRLGLHITIETAGTLHL 104

Query: 125 PQGIDWICVSPK 136
               D + +SPK
Sbjct: 105 EVACDLMSISPK 116


>gi|261342207|ref|ZP_05970065.1| radical SAM domain protein [Enterobacter cancerogenus ATCC 35316]
 gi|288315541|gb|EFC54479.1| radical SAM domain protein [Enterobacter cancerogenus ATCC 35316]
          Length = 223

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 101/238 (42%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-------- 55
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51

Query: 56  ---------GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  N + L  +I  Q  T     R+ V+TGGEP +   +PL + 
Sbjct: 52  VSLFSILAKTKESDKWGAGNAEDLLAIIGRQGWTA----RHVVITGGEPCIHDLMPLTEL 107

Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKA----GCDL---KIKGGQELKLVFPQVN- 157
           L K G+   +ET+GT E       W+ VSPK     G D+    ++   E+K    +V  
Sbjct: 108 LEKNGYSCQIETSGTHEVRCSHTTWVTVSPKVNMRGGYDVLSQALERADEIKHPVGRVRD 167

Query: 158 --VSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                E       E+    +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLTDEKQRIIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|317049298|ref|YP_004116946.1| Radical SAM domain-containing protein [Pantoea sp. At-9b]
 gi|316950915|gb|ADU70390.1| Radical SAM domain protein [Pantoea sp. At-9b]
          Length = 223

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 103/238 (43%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-------- 55
           Y I E+F TLQGEG + G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGFYTGVPALFIRLQGCPV-----------GCSWCDTKHTWEKLADRE 51

Query: 56  ---------GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                     ++    G  +   L D I+ Q  T     R+ V+TGGEP +    PL  A
Sbjct: 52  TSLGDILVKTVESDAWGNADAAMLIDTIQRQGWTA----RHVVITGGEPAIYDLRPLTSA 107

Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKA----GCDL---KIKGGQELKLVFPQV-N 157
           L   GF   +ET+GT E       W+ VSPK     G D+    ++   E+K    +V +
Sbjct: 108 LEAAGFACQIETSGTHEIRCSDSTWVTVSPKVNMRGGYDVLPQALQRADEIKHPVARVRD 167

Query: 158 VSPENYI--GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           V   + +  G   E+    +LQP+     +  T L I  C     WRLS+QTHK++ I
Sbjct: 168 VEALDALLAGLHDEKKRIIALQPISRG--DAATKLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|255534291|ref|YP_003094662.1| Queuosine Biosynthesis QueE Radical SAM [Flavobacteriaceae
           bacterium 3519-10]
 gi|255340487|gb|ACU06600.1| Queuosine Biosynthesis QueE Radical SAM [Flavobacteriaceae
           bacterium 3519-10]
          Length = 210

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 95/220 (43%), Gaps = 35/220 (15%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           ++  + E F TLQGEG H G+ A F R  GC++            C +CD        T 
Sbjct: 14  EMLPVMEHFYTLQGEGAHTGKAAYFIRLGGCDV-----------GCHWCDVK-ESWDPTL 61

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
               +  Q+A+       T  K  +  VLTGGEPL+     L   L + G  I +ET+G 
Sbjct: 62  HPLMSAVQIAE-------TAAKHCKTIVLTGGEPLMWNLEILTSRLKELGCTIHIETSGA 114

Query: 122 IEPPQGIDWICVSPKAG---CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS-LQPMD 177
                 +DWI +SPK      D       ELK++     V   N + F  E+ + + P  
Sbjct: 115 YPMSGHLDWITLSPKKTGLPKDQIYAKAHELKVI-----VFNNNDLKFAAEQAAKVSPTC 169

Query: 178 GPFL-------EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             +L       EE       +   NP+W+ SVQTHK++ I
Sbjct: 170 RLYLQSEWSKREEIYPKITDFILANPEWQASVQTHKYLNI 209


>gi|145298762|ref|YP_001141603.1| radical activating enzyme [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142851534|gb|ABO89855.1| radical activating enzyme [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 250

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 101/245 (41%), Gaps = 63/245 (25%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54
           Y I EIF T+QGEG   G  A+F R  GC +            C +CDT           
Sbjct: 30  YPINEIFQTIQGEGIFTGLPAIFVRLQGCPV-----------GCPWCDTRHTWIVDPARE 78

Query: 55  VGIQGTKGGRYNVDQLADLIEEQWITGEK----EGRYCVLTGGEPLLQVDVPLIQALNKR 110
           VG+Q         D  + +  +Q +   +    + R+ V+TGGEP L     L   L   
Sbjct: 79  VGVQAVLDCSNESDSWSKMSTDQILASFQQLGYQARHVVITGGEPCLYDLHELSTVLLAA 138

Query: 111 GFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIKGG----------------------- 146
           G+++ +ET+GT E       W+ VSPK G    +KGG                       
Sbjct: 139 GYQVQIETSGTSEIKTHDSTWVTVSPKIG----MKGGLPVLVSALERANEIKHPVATERH 194

Query: 147 -QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205
            +EL  +     + P+  I       +LQP+        T LA++ C     WRLS+QTH
Sbjct: 195 IEELDALLATATLRPDVEI-------ALQPISQK--PRATQLAMAVCIAR-NWRLSIQTH 244

Query: 206 KFIGI 210
           K++ I
Sbjct: 245 KYLDI 249


>gi|126697219|ref|YP_001092105.1| putative organic radical activating protein [Prochlorococcus
           marinus str. MIT 9301]
 gi|126544262|gb|ABO18504.1| possible organic radical activating enzyme [Prochlorococcus marinus
           str. MIT 9301]
          Length = 223

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 101/238 (42%), Gaps = 59/238 (24%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           E F +LQGEG HAG+ A F R +GC +            C +CDT           +Y  
Sbjct: 9   EQFHSLQGEGYHAGKSAFFVRLAGCKV-----------GCSWCDTK----NSWDEKKYPS 53

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGFEIAVETNG 120
             +  +I+   I  EK   +CV+TGGEPL        +A+ K       +  +I +ET+G
Sbjct: 54  ISIEKIIDRIKIAREKGASFCVITGGEPLQHNLDNFCKAIKKMTMGEELKPMKIHIETSG 113

Query: 121 TIEPPQGIDWICVSPK----------AGCD---------------LKIKGGQELKLVFPQ 155
                   DWI +SPK            C+               ++IK  + LK   P 
Sbjct: 114 VNSISGSYDWITLSPKRHSPPKSYFLKNCNEIKIIINEIEDIEFAIQIK-KETLKQYHPS 172

Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTN---LAISYCFQNPKWRLSVQTHKFIGI 210
                E+ +  + + F LQP        N N   LAI +   NP W+LS+QTHK++ I
Sbjct: 173 ---KSEDGLKKEDKIFYLQPA-----WNNANGFSLAIDFVKNNPDWKLSLQTHKYLKI 222


>gi|149369786|ref|ZP_01889637.1| hypothetical protein SCB49_01894 [unidentified eubacterium SCB49]
 gi|149356277|gb|EDM44833.1| hypothetical protein SCB49_01894 [unidentified eubacterium SCB49]
          Length = 209

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 95/224 (42%), Gaps = 51/224 (22%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F T+QGEG + G  A F R  GC++            C +CD              
Sbjct: 17  LMEEFYTIQGEGYYKGTAAYFIRIGGCDV-----------GCHWCDVK-ESWNPDIHPPT 64

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
           +++ +AD          K  +  V+TGGEPL+    PL + L  +G    +ET+G     
Sbjct: 65  SIETIAD-------NAAKYSKTIVITGGEPLMWDMNPLTELLKSKGVNTHIETSGAYSLS 117

Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFERFS-------- 172
              DWIC+SPK           ++KL  P+V  +        Y   DF RF+        
Sbjct: 118 GTWDWICLSPK-----------KMKLPTPEVYAAAHELKMIIYNKDDF-RFAEEQASKVN 165

Query: 173 ------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                 LQP +    ++     + Y  QNPKW +S+QTHK++ I
Sbjct: 166 ADCKLFLQP-EWSKRDKMVPEIVDYVMQNPKWVVSLQTHKYLNI 208


>gi|157148316|ref|YP_001455635.1| hypothetical protein CKO_04133 [Citrobacter koseri ATCC BAA-895]
 gi|157085521|gb|ABV15199.1| hypothetical protein CKO_04133 [Citrobacter koseri ATCC BAA-895]
          Length = 223

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 101/233 (43%), Gaps = 39/233 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I E+F TLQGEG   G  A+F R  GC          + W   E   +S       T 
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLEDREVSLYSILAKTK 62

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
               +  K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K GF 
Sbjct: 63  ----ESDKWGAASSEDLLAVISRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKNGFS 114

Query: 114 IAVETNGTIE---PPQGIDWICVSPKA----GCDL---KIKGGQELKLVFPQVNVSPE-- 161
             +ET+GT E    P    W+ VSPK     G D+    ++   E+K    +V       
Sbjct: 115 CQIETSGTHEVRCTPNT--WVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALD 172

Query: 162 ---NYIGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                +  D  R  +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 173 ELLATLSDDKPRIIALQPISQK--EDATRLCIETCIVR-NWRLSMQTHKYLNI 222


>gi|170018977|ref|YP_001723931.1| hypothetical protein EcolC_0935 [Escherichia coli ATCC 8739]
 gi|312973008|ref|ZP_07787181.1| uncharacterized protein ygcF [Escherichia coli 1827-70]
 gi|169753905|gb|ACA76604.1| conserved hypothetical protein [Escherichia coli ATCC 8739]
 gi|310332950|gb|EFQ00164.1| uncharacterized protein ygcF [Escherichia coli 1827-70]
 gi|323941542|gb|EGB37724.1| queuosine biosynthesis protein QueE [Escherichia coli E482]
          Length = 223

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 102/237 (43%), Gaps = 47/237 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I E+F TLQGEG   G  A+F R  GC          + W   E   +S       T 
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
               +  K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K GF 
Sbjct: 63  ----ESDKWGAASSEDLLAIIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114

Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168
             +ET+GT E    P    W+ VSPK    L ++GG E+     +     ++ +G   D 
Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYEVLSQALERANEIKHPVGRVRDI 168

Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E                 +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|304388249|ref|ZP_07370369.1| radical SAM domain protein [Neisseria meningitidis ATCC 13091]
 gi|304337776|gb|EFM03925.1| radical SAM domain protein [Neisseria meningitidis ATCC 13091]
          Length = 212

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 102/227 (44%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 54  TFGMMSLSDILG---CLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I    E+++      V+  + +GF  + ER     
Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIAEADEVRI------VADGDVVGFCENMERKIRAH 164

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
            + L P   DG     +T   I      P     W+LSVQTHK+ GI
Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGI 211


>gi|291086244|ref|ZP_06355196.2| radical SAM domain protein [Citrobacter youngae ATCC 29220]
 gi|291068637|gb|EFE06746.1| radical SAM domain protein [Citrobacter youngae ATCC 29220]
          Length = 242

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 104/238 (43%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I E+F TLQGEG   G  A+F R  GC          + W   E   +S       T 
Sbjct: 22  YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLEDREVSLYSILAKTK 81

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
               +  K G  + + L  +I+ Q  T     R+ V+TGGEP +   +PL   L K GF 
Sbjct: 82  ----ESDKWGAASSEDLLAVIQRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKNGFS 133

Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVNVSPENYIG--FD 167
             +ET+GT E    P    W+ VSPK    + ++GG + L     + N   ++ +G   D
Sbjct: 134 CQIETSGTHEVRCTPNT--WVTVSPK----VNMRGGYDVLSQALERAN-EIKHPVGRVRD 186

Query: 168 FERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            E                 +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 187 IEALDELLATLSDDKPRIIALQPISQK--EDATRLCIDTCIAC-NWRLSMQTHKYLNI 241


>gi|15892856|ref|NP_360570.1| hypothetical protein RC0933 [Rickettsia conorii str. Malish 7]
 gi|34581434|ref|ZP_00142914.1| hypothetical protein [Rickettsia sibirica 246]
 gi|157828787|ref|YP_001495029.1| hypothetical protein A1G_05140 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933515|ref|YP_001650304.1| queuosine biosynthesis protein [Rickettsia rickettsii str. Iowa]
 gi|229586950|ref|YP_002845451.1| Organic radical activating enzyme [Rickettsia africae ESF-5]
 gi|15620043|gb|AAL03471.1| unknown [Rickettsia conorii str. Malish 7]
 gi|28262819|gb|EAA26323.1| unknown [Rickettsia sibirica 246]
 gi|157801268|gb|ABV76521.1| hypothetical protein A1G_05140 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908602|gb|ABY72898.1| queuosine biosynthesis protein [Rickettsia rickettsii str. Iowa]
 gi|228022000|gb|ACP53708.1| Organic radical activating enzyme [Rickettsia africae ESF-5]
          Length = 225

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 44/227 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           ++ IF T+QGEG   G  A+F R  GCNL            C FCDT+F           
Sbjct: 20  VQSIFKTIQGEGIFVGCPAIFIRLGGCNLA-----------CNFCDTEFEDFD-----LV 63

Query: 66  NVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122
           ++D++ + +E   +    EK     V+TGGEP+ Q    L Q L  R  ++ +ETNGT+ 
Sbjct: 64  DIDKILNKVESLALNSKNEKSINLVVITGGEPMRQPIELLCQKLLDRDVKVQIETNGTLY 123

Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN----VSPENYI-----------GF 166
              P+ +  IC SPK G     K  ++L    P+++    +  +N +            +
Sbjct: 124 RSLPKEVSIIC-SPKVGKTGYSKIREDL---LPKISAVKFIVAKNILEYSLIPEVGQTSY 179

Query: 167 DFERFSLQPMDGP---FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +   F +QPMD        EN  LA+    ++   RLS+QTHKF+ I
Sbjct: 180 NIPVF-IQPMDQNNQRLNGENNELAVKLALES-GARLSLQTHKFLNI 224


>gi|218767651|ref|YP_002342163.1| hypothetical protein NMA0707 [Neisseria meningitidis Z2491]
 gi|121051659|emb|CAM07962.1| hypothetical protein NMA0707 [Neisseria meningitidis Z2491]
 gi|308388712|gb|ADO31032.1| hypothetical protein NMBB_0569 [Neisseria meningitidis alpha710]
          Length = 212

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 54  TFGMMSLSDILGR---LKAYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I+   E+++      V+  + + F  + ER     
Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDVVAFCENMERKIRAH 164

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
            + L P   DG     +T   I      P     W+LSVQTHK+ GI
Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211


>gi|238786798|ref|ZP_04630599.1| hypothetical protein yfred0001_17670 [Yersinia frederiksenii ATCC
           33641]
 gi|238725166|gb|EEQ16805.1| hypothetical protein yfred0001_17670 [Yersinia frederiksenii ATCC
           33641]
          Length = 223

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 101/234 (43%), Gaps = 41/234 (17%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60
           Y I E+F TLQGEG   G  A+F R  GC +   W   +        R  D   + ++  
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKDANREVDMQRIMVKTA 62

Query: 61  KG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +    G     QL D+  +Q  T     R+ V+TGGEP +    PL   L + G+   +E
Sbjct: 63  ESDAWGTATEQQLLDIFIQQGYT----ARHVVITGGEPAIYDLFPLTSHLEQAGYSCQIE 118

Query: 118 TNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY------------- 163
           T+GT E       W+ VSPK    + ++GG +   V PQ     +               
Sbjct: 119 TSGTHEVQCSATTWVTVSPK----VNMRGGLK---VLPQALQRADEIKHPVGRLRDIEAL 171

Query: 164 ------IGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                 +  D +R  +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 172 EALLATLDDDKKRIIALQPISQK--EDATKLCIETCIVK-NWRLSMQTHKYLNI 222


>gi|56414895|ref|YP_151970.1| hypothetical protein SPA2807 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197363823|ref|YP_002143460.1| hypothetical protein SSPA2615 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56129152|gb|AAV78658.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197095300|emb|CAR60857.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 223

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 107/234 (45%), Gaps = 41/234 (17%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGI- 57
           Y I E+F TLQGEG   G  A+F R  GC +   W   +   D+LS +     +    I 
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLYSILAKIK 62

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +  K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K GF   +E
Sbjct: 63  ESDKWGAASSEDLLAVINRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKSGFSCQIE 118

Query: 118 TNGTIE---PPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVNVSPENYIG--FDFERF 171
           T+GT E    P    W+ VSPK    + ++GG + L     + N   ++ +G   D E  
Sbjct: 119 TSGTHEVRCTPNT--WVTVSPK----VNMRGGYDVLSQALERAN-EIKHPVGRVRDIEAL 171

Query: 172 ---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                          +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 172 DELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|33862246|ref|NP_893807.1| putative organic radical activating protein [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33634464|emb|CAE20149.1| possible organic radical activating enzyme [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 223

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 104/236 (44%), Gaps = 53/236 (22%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           E F +LQGEG H G+ A F R +GC           S  C +CDT           +Y +
Sbjct: 9   EKFHSLQGEGFHTGQSAFFIRLAGC-----------SVGCSWCDTK----HSWDKEKYPL 53

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-------IAVETNG 120
             +  +I+E     +K   + V+TGGEPL      L QA+NK   E       I +ET+G
Sbjct: 54  IPIKKIIDEIKKARKKGASFLVITGGEPLHHNLDNLCQAINKETSEKDQNPIKIHIETSG 113

Query: 121 TIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFP-------------------QVNV 158
             +     DWI +SPK     K   ++   ELK++                     Q   
Sbjct: 114 VNKMSGNYDWITLSPKRHLPPKTYFLENFNELKIIINDKKDIDFAIDIKQEIMNKYQNLS 173

Query: 159 SPENYIGFDFERFSLQPMDGPFLEENT---NLAISYCFQNPKWRLSVQTHKFIGIR 211
           S +N+   D +++ +QP       EN    +L I +   NP+W LS+QTHK++ I+
Sbjct: 174 SKDNFYKLD-KKYYVQPA-----WENARGFSLTIDFVKNNPEWNLSLQTHKYLKIK 223


>gi|298370138|ref|ZP_06981454.1| radical SAM domain protein [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281598|gb|EFI23087.1| radical SAM domain protein [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 241

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 105/232 (45%), Gaps = 58/232 (25%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 42  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 82

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           ++ +  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 83  KFGMMSLSDILGR---LKTYAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCIETNGLK 139

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I    E+++      V+  + + F  + ER     
Sbjct: 140 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRI------VADGDVVAFCENMERKIRAR 193

Query: 171 -FSLQPMDGPFLEENTNLAISYCFQ-----------NPKWRLSVQTHKFIGI 210
            + L P      E+N+ + I    +           +  W+LSVQTHK+ GI
Sbjct: 194 HYYLSP-----CEQNSVMNIYDTIRQIGLLNSRPDASVHWQLSVQTHKWAGI 240


>gi|15832887|ref|NP_311660.1| hypothetical protein ECs3633 [Escherichia coli O157:H7 str. Sakai]
 gi|16130684|ref|NP_417257.1| conserved protein [Escherichia coli str. K-12 substr. MG1655]
 gi|24114061|ref|NP_708571.1| hypothetical protein SF2790 [Shigella flexneri 2a str. 301]
 gi|30064123|ref|NP_838294.1| hypothetical protein S2984 [Shigella flexneri 2a str. 2457T]
 gi|82778146|ref|YP_404495.1| hypothetical protein SDY_2981 [Shigella dysenteriae Sd197]
 gi|89109563|ref|AP_003343.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110]
 gi|157155007|ref|YP_001464098.1| hypothetical protein EcE24377A_3080 [Escherichia coli E24377A]
 gi|157162228|ref|YP_001459546.1| hypothetical protein EcHS_A2918 [Escherichia coli HS]
 gi|168749899|ref|ZP_02774921.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758464|ref|ZP_02783471.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762823|ref|ZP_02787830.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768869|ref|ZP_02793876.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|168778760|ref|ZP_02803767.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|168788031|ref|ZP_02813038.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC869]
 gi|168802847|ref|ZP_02827854.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC508]
 gi|170082350|ref|YP_001731670.1| hypothetical protein ECDH10B_2944 [Escherichia coli str. K-12
           substr. DH10B]
 gi|170682101|ref|YP_001744934.1| hypothetical protein EcSMS35_2910 [Escherichia coli SMS-3-5]
 gi|170766131|ref|ZP_02900942.1| conserved hypothetical protein [Escherichia albertii TW07627]
 gi|188495163|ref|ZP_03002433.1| conserved hypothetical protein [Escherichia coli 53638]
 gi|194434862|ref|ZP_03067109.1| conserved hypothetical protein [Shigella dysenteriae 1012]
 gi|194438962|ref|ZP_03071046.1| conserved hypothetical protein [Escherichia coli 101-1]
 gi|195939488|ref|ZP_03084870.1| hypothetical protein EscherichcoliO157_24278 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208805739|ref|ZP_03248076.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813020|ref|ZP_03254349.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819186|ref|ZP_03259506.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398503|ref|YP_002272239.1| hypothetical protein ECH74115_4033 [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327761|ref|ZP_03443844.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218547712|ref|YP_002381503.1| hypothetical protein EFER_0293 [Escherichia fergusonii ATCC 35469]
 gi|218696375|ref|YP_002404042.1| hypothetical protein EC55989_3051 [Escherichia coli 55989]
 gi|218706272|ref|YP_002413791.1| hypothetical protein ECUMN_3104 [Escherichia coli UMN026]
 gi|238901913|ref|YP_002927709.1| hypothetical protein BWG_2512 [Escherichia coli BW2952]
 gi|253772373|ref|YP_003035204.1| hypothetical protein ECBD_0953 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037826|ref|ZP_04871884.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|254162703|ref|YP_003045811.1| hypothetical protein ECB_02622 [Escherichia coli B str. REL606]
 gi|254794716|ref|YP_003079553.1| hypothetical protein ECSP_3726 [Escherichia coli O157:H7 str.
           TW14359]
 gi|256024721|ref|ZP_05438586.1| hypothetical protein E4_15200 [Escherichia sp. 4_1_40B]
 gi|261226072|ref|ZP_05940353.1| hypothetical protein EscherichiacoliO157_15958 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261256672|ref|ZP_05949205.1| hypothetical protein EscherichiacoliO157EcO_12655 [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291284103|ref|YP_003500921.1| hypothetical protein G2583_3426 [Escherichia coli O55:H7 str.
           CB9615]
 gi|293406268|ref|ZP_06650194.1| aconitate hydratase [Escherichia coli FVEC1412]
 gi|293416022|ref|ZP_06658662.1| ygcF protein [Escherichia coli B185]
 gi|293449103|ref|ZP_06663524.1| ygcF protein [Escherichia coli B088]
 gi|298382006|ref|ZP_06991603.1| ygcF protein [Escherichia coli FVEC1302]
 gi|300899636|ref|ZP_07117868.1| radical SAM domain protein [Escherichia coli MS 198-1]
 gi|300931233|ref|ZP_07146574.1| radical SAM domain protein [Escherichia coli MS 187-1]
 gi|300950504|ref|ZP_07164414.1| radical SAM domain protein [Escherichia coli MS 116-1]
 gi|300958089|ref|ZP_07170250.1| radical SAM domain protein [Escherichia coli MS 175-1]
 gi|301020692|ref|ZP_07184762.1| radical SAM domain protein [Escherichia coli MS 196-1]
 gi|301645261|ref|ZP_07245212.1| radical SAM domain protein [Escherichia coli MS 146-1]
 gi|307139461|ref|ZP_07498817.1| hypothetical protein EcolH7_15212 [Escherichia coli H736]
 gi|307312795|ref|ZP_07592425.1| Radical SAM domain protein [Escherichia coli W]
 gi|309786123|ref|ZP_07680751.1| uncharacterized protein ygcF [Shigella dysenteriae 1617]
 gi|331643461|ref|ZP_08344592.1| putative Organic radical activating enzyme [Escherichia coli H736]
 gi|331654257|ref|ZP_08355257.1| putative Organic radical activating enzyme [Escherichia coli M718]
 gi|331684398|ref|ZP_08384990.1| putative Organic radical activating enzyme [Escherichia coli H299]
 gi|54040228|sp|P64555|YGCF_ECO57 RecName: Full=7-carboxy-7-deazaguanine synthase homolog
 gi|54040229|sp|P64556|YGCF_SHIFL RecName: Full=7-carboxy-7-deazaguanine synthase homolog
 gi|54042396|sp|P64554|YGCF_ECOLI RecName: Full=7-carboxy-7-deazaguanine synthase homolog
 gi|882671|gb|AAA69287.1| ORF_f223 [Escherichia coli str. K-12 substr. MG1655]
 gi|1789139|gb|AAC75819.1| conserved protein [Escherichia coli str. K-12 substr. MG1655]
 gi|13363104|dbj|BAB37056.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|24053188|gb|AAN44278.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30042379|gb|AAP18104.1| hypothetical protein S2984 [Shigella flexneri 2a str. 2457T]
 gi|81242294|gb|ABB63004.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|85675596|dbj|BAE76851.1| conserved hypothetical protein [Escherichia coli str. K12 substr.
           W3110]
 gi|157067908|gb|ABV07163.1| conserved hypothetical protein [Escherichia coli HS]
 gi|157077037|gb|ABV16745.1| conserved hypothetical protein [Escherichia coli E24377A]
 gi|169890185|gb|ACB03892.1| conserved protein [Escherichia coli str. K-12 substr. DH10B]
 gi|170125277|gb|EDS94208.1| conserved hypothetical protein [Escherichia albertii TW07627]
 gi|170519819|gb|ACB17997.1| conserved hypothetical protein [Escherichia coli SMS-3-5]
 gi|188015830|gb|EDU53952.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|188490362|gb|EDU65465.1| conserved hypothetical protein [Escherichia coli 53638]
 gi|189003552|gb|EDU72538.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354704|gb|EDU73123.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362097|gb|EDU80516.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366881|gb|EDU85297.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372100|gb|EDU90516.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC869]
 gi|189375278|gb|EDU93694.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC508]
 gi|194416881|gb|EDX33003.1| conserved hypothetical protein [Shigella dysenteriae 1012]
 gi|194422083|gb|EDX38086.1| conserved hypothetical protein [Escherichia coli 101-1]
 gi|208725540|gb|EDZ75141.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734297|gb|EDZ82984.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739309|gb|EDZ86991.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159903|gb|ACI37336.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209761508|gb|ACI79066.1| hypothetical protein ECs3633 [Escherichia coli]
 gi|209761510|gb|ACI79067.1| hypothetical protein ECs3633 [Escherichia coli]
 gi|209761512|gb|ACI79068.1| hypothetical protein ECs3633 [Escherichia coli]
 gi|209761514|gb|ACI79069.1| hypothetical protein ECs3633 [Escherichia coli]
 gi|209761516|gb|ACI79070.1| hypothetical protein ECs3633 [Escherichia coli]
 gi|217320128|gb|EEC28553.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218353107|emb|CAU98932.1| conserved hypothetical protein [Escherichia coli 55989]
 gi|218355253|emb|CAQ87860.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469]
 gi|218433369|emb|CAR14271.1| conserved hypothetical protein [Escherichia coli UMN026]
 gi|226839450|gb|EEH71471.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|238860367|gb|ACR62365.1| conserved protein [Escherichia coli BW2952]
 gi|242378324|emb|CAQ33101.1| conserved protein [Escherichia coli BL21(DE3)]
 gi|253323417|gb|ACT28019.1| conserved hypothetical protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974604|gb|ACT40275.1| hypothetical protein ECB_02622 [Escherichia coli B str. REL606]
 gi|253978769|gb|ACT44439.1| hypothetical protein ECD_02622 [Escherichia coli BL21(DE3)]
 gi|254594116|gb|ACT73477.1| conserved protein [Escherichia coli O157:H7 str. TW14359]
 gi|260448173|gb|ACX38595.1| conserved hypothetical protein [Escherichia coli DH1]
 gi|281602138|gb|ADA75122.1| hypothetical protein SFxv_3060 [Shigella flexneri 2002017]
 gi|290763976|gb|ADD57937.1| hypothetical protein G2583_3426 [Escherichia coli O55:H7 str.
           CB9615]
 gi|291322193|gb|EFE61622.1| ygcF protein [Escherichia coli B088]
 gi|291426274|gb|EFE99306.1| aconitate hydratase [Escherichia coli FVEC1412]
 gi|291432211|gb|EFF05193.1| ygcF protein [Escherichia coli B185]
 gi|298277146|gb|EFI18662.1| ygcF protein [Escherichia coli FVEC1302]
 gi|299881782|gb|EFI89993.1| radical SAM domain protein [Escherichia coli MS 196-1]
 gi|300315222|gb|EFJ65006.1| radical SAM domain protein [Escherichia coli MS 175-1]
 gi|300356797|gb|EFJ72667.1| radical SAM domain protein [Escherichia coli MS 198-1]
 gi|300450164|gb|EFK13784.1| radical SAM domain protein [Escherichia coli MS 116-1]
 gi|300460946|gb|EFK24439.1| radical SAM domain protein [Escherichia coli MS 187-1]
 gi|301076426|gb|EFK91232.1| radical SAM domain protein [Escherichia coli MS 146-1]
 gi|306907230|gb|EFN37736.1| Radical SAM domain protein [Escherichia coli W]
 gi|308925868|gb|EFP71347.1| uncharacterized protein ygcF [Shigella dysenteriae 1617]
 gi|309703136|emb|CBJ02470.1| conserved hypothetical protein [Escherichia coli ETEC H10407]
 gi|313647836|gb|EFS12282.1| uncharacterized protein ygcF [Shigella flexneri 2a str. 2457T]
 gi|315062058|gb|ADT76385.1| conserved protein [Escherichia coli W]
 gi|315137383|dbj|BAJ44542.1| hypothetical protein ECDH1ME8569_2686 [Escherichia coli DH1]
 gi|315615162|gb|EFU95799.1| uncharacterized protein ygcF [Escherichia coli 3431]
 gi|320182388|gb|EFW57285.1| Queuosine Biosynthesis QueE Radical SAM [Shigella boydii ATCC 9905]
 gi|320189106|gb|EFW63765.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli O157:H7
           str. EC1212]
 gi|320640422|gb|EFX09961.1| hypothetical protein ECO5101_03379 [Escherichia coli O157:H7 str.
           G5101]
 gi|320645668|gb|EFX14653.1| hypothetical protein ECO9389_22861 [Escherichia coli O157:H- str.
           493-89]
 gi|320650968|gb|EFX19408.1| hypothetical protein ECO2687_10848 [Escherichia coli O157:H- str. H
           2687]
 gi|320656464|gb|EFX24360.1| hypothetical protein ECO7815_01005 [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662360|gb|EFX29757.1| hypothetical protein ECO5905_04892 [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320667058|gb|EFX34021.1| hypothetical protein ECOSU61_08009 [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323183315|gb|EFZ68712.1| hypothetical protein ECOK1357_3090 [Escherichia coli 1357]
 gi|323377359|gb|ADX49627.1| Radical SAM domain protein [Escherichia coli KO11]
 gi|323933926|gb|EGB30415.1| queuosine biosynthesis protein QueE [Escherichia coli E1520]
 gi|323946500|gb|EGB42526.1| queuosine biosynthesis protein QueE [Escherichia coli H120]
 gi|323960705|gb|EGB56329.1| queuosine biosynthesis protein QueE [Escherichia coli H489]
 gi|323966752|gb|EGB62183.1| queuosine biosynthesis protein QueE [Escherichia coli M863]
 gi|323971622|gb|EGB66853.1| queuosine biosynthesis protein QueE [Escherichia coli TA007]
 gi|323978613|gb|EGB73695.1| queuosine biosynthesis protein QueE [Escherichia coli TW10509]
 gi|324111402|gb|EGC05384.1| hypothetical protein ERIG_04120 [Escherichia fergusonii B253]
 gi|324119819|gb|EGC13698.1| queuosine biosynthesis protein QueE [Escherichia coli E1167]
 gi|325496184|gb|EGC94043.1| hypothetical protein ECD227_0281 [Escherichia fergusonii ECD227]
 gi|326339155|gb|EGD62970.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli O157:H7
           str. 1044]
 gi|326342962|gb|EGD66730.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli O157:H7
           str. 1125]
 gi|327251511|gb|EGE63197.1| hypothetical protein ECSTEC7V_3359 [Escherichia coli STEC_7v]
 gi|331036932|gb|EGI09156.1| putative Organic radical activating enzyme [Escherichia coli H736]
 gi|331047639|gb|EGI19716.1| putative Organic radical activating enzyme [Escherichia coli M718]
 gi|331078013|gb|EGI49219.1| putative Organic radical activating enzyme [Escherichia coli H299]
 gi|332087574|gb|EGI92702.1| hypothetical protein SB521682_3318 [Shigella boydii 5216-82]
 gi|332087749|gb|EGI92876.1| hypothetical protein SD15574_3520 [Shigella dysenteriae 155-74]
          Length = 223

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 102/237 (43%), Gaps = 47/237 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I E+F TLQGEG   G  A+F R  GC          + W   E   +S       T 
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
               +  K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K GF 
Sbjct: 63  ----ESDKWGAASSEDLLAVIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114

Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168
             +ET+GT E    P    W+ VSPK    L ++GG E+     +     ++ +G   D 
Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYEVLSQALERANEIKHPVGRVRDI 168

Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E                 +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|220917757|ref|YP_002493061.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955611|gb|ACL65995.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 210

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 103/230 (44%), Gaps = 57/230 (24%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF ++QGEG  AGR  VF RF+GC+L           +C +CDT +    G      
Sbjct: 3   VTEIFFSIQGEGSRAGRPCVFVRFTGCDL-----------RCGYCDTAYAFHGGA----- 46

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124
           ++D+ A L E          R+  LTGGEP+LQ ++P L + L  RG+E+AVET+G    
Sbjct: 47  DMDRAAILAE----VARHPARFVCLTGGEPMLQRELPDLARELLARGYEVAVETHGQ--- 99

Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENYIGF------DFERFSLQPMD 177
            + +D +        D+K  G  E+      ++ + P + + F      DF R+S + + 
Sbjct: 100 -RPLDALPAEAIRVVDVKTPGSGEVATDLAYLDRLQPHDEVKFVVCSEDDF-RWSREVVR 157

Query: 178 GPFLEENTNLAISYCFQNPKW-------------------RLSVQTHKFI 208
              LE    +  S     P W                   RLS+Q HK +
Sbjct: 158 RHALEGRVQVLFS-----PAWGQVAPRDLVRWMLESGLDARLSLQVHKVV 202


>gi|255066205|ref|ZP_05318060.1| radical SAM domain protein [Neisseria sicca ATCC 29256]
 gi|255049415|gb|EET44879.1| radical SAM domain protein [Neisseria sicca ATCC 29256]
          Length = 212

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 105/227 (46%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           ++++  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 54  KFSMMSLSDILGR---LKTYTVRNIIITGGEPTIQPHLDTLLDALKAEGYFLCIETNGLK 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I+   E+++      V+  + + F  + ER     
Sbjct: 111 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDVVAFCENMERKIRAR 164

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
            + L P   +G     +T   I      P     W+LSVQTHK+ GI
Sbjct: 165 HYYLSPCEQNGVMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211


>gi|110806555|ref|YP_690075.1| hypothetical protein SFV_2678 [Shigella flexneri 5 str. 8401]
 gi|110616103|gb|ABF04770.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 223

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 102/237 (43%), Gaps = 47/237 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I E+F TLQGEG   G  A+F R  GC          + W   E   +S       T 
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHAWEKLEDREVSLFSILAKTK 62

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
               +  K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K GF 
Sbjct: 63  ----ESDKWGAASSEDLLAVIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114

Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168
             +ET+GT E    P    W+ VSPK    L ++GG E+     +     ++ +G   D 
Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYEVLSQALERANEIKHPVGRVRDI 168

Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E                 +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|300718116|ref|YP_003742919.1| Putative organic radical activating enzyme [Erwinia billingiae
           Eb661]
 gi|299063952|emb|CAX61072.1| Putative organic radical activating enzyme [Erwinia billingiae
           Eb661]
          Length = 223

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 104/234 (44%), Gaps = 41/234 (17%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLS-AQCRFCDTDFVGI 57
           Y I E+F TLQGEG + G  A+F R  GC +   W   +   D+L+  +    D     +
Sbjct: 3   YPINEMFQTLQGEGFYTGVPAIFIRLQGCPVGCSWCDTKHTWDKLADRETSLGDILTKTV 62

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +    G  N   L  +I     T     R+ V+TGGEP +    PL   L + GF   +E
Sbjct: 63  ETDAWGSANAAALLAVIANHGWTA----RHIVITGGEPCIHDLTPLTATLQQHGFSCQIE 118

Query: 118 TNGTIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY------------- 163
           T+GT E     + W+ VSPK    + ++GG +   V  Q  V  +               
Sbjct: 119 TSGTHEVLCSAETWVTVSPK----VNMRGGYD---VLNQALVRADEVKHPVARQRDVEAL 171

Query: 164 ------IGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                 +  D  R  +LQP+     ++ T L I  C ++  WRLS+QTHK++ I
Sbjct: 172 QALLATLNDDKPRIIALQPISQK--DDATKLCIETCIKH-NWRLSMQTHKYLNI 222


>gi|331664336|ref|ZP_08365242.1| putative Organic radical activating enzyme [Escherichia coli TA143]
 gi|284922713|emb|CBG35801.1| conserved hypothetical protein [Escherichia coli 042]
 gi|331058267|gb|EGI30248.1| putative Organic radical activating enzyme [Escherichia coli TA143]
          Length = 223

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 102/237 (43%), Gaps = 47/237 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I E+F TLQGEG   G  A+F R  GC          + W   E   +S       T 
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
               +  K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K GF 
Sbjct: 63  ----ESDKWGAASSEDLLAVIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114

Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168
             +ET+GT E    P    W+ VSPK    L ++GG E+     +     ++ +G   D 
Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYEVLSQALERANEIKHPVGRVRDI 168

Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E                 +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIDTCIAR-NWRLSMQTHKYLNI 222


>gi|15803295|ref|NP_289328.1| hypothetical protein Z4089 [Escherichia coli O157:H7 EDL933]
 gi|25497213|pir||C85928 hypothetical protein ygcF [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12517243|gb|AAG57887.1|AE005505_5 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 223

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 102/237 (43%), Gaps = 47/237 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I E+F TLQGEG   G  A+F R  GC          + W   E   +S       T 
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
               +  K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K GF 
Sbjct: 63  ----ESDKWGAASSEBLLAVIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114

Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168
             +ET+GT E    P    W+ VSPK    L ++GG E+     +     ++ +G   D 
Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYEVLSQALERANEIKHPVGRVRDI 168

Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E                 +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|283786677|ref|YP_003366542.1| hypothetical protein ROD_30371 [Citrobacter rodentium ICC168]
 gi|282950131|emb|CBG89767.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
          Length = 223

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 104/233 (44%), Gaps = 39/233 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I E+F TLQGEG   G  A+F R  GC          + W   E   +S       T 
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLEDREVSLFSILAKTK 62

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
               +  K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K GF 
Sbjct: 63  ----ESDKWGAASSEDLLAVINRQGYTA----RHVVITGGEPCIHDLMPLTALLEKNGFS 114

Query: 114 IAVETNGTIE---PPQGIDWICVSPKA----GCDL---KIKGGQELKLVFPQV-NVSPEN 162
             +ET+GT E    P    W+ VSPK     G D+    ++   E+K    +V ++   +
Sbjct: 115 CQIETSGTHEVRCTPNT--WVTVSPKVNMRGGYDILSQALERANEIKHPVGRVRDIEALD 172

Query: 163 ----YIGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                +  D  R  +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 173 ELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|313126238|ref|YP_004036508.1| organic radical activating enzyme [Halogeometricum borinquense DSM
           11551]
 gi|312292603|gb|ADQ67063.1| organic radical activating enzyme [Halogeometricum borinquense DSM
           11551]
          Length = 257

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 19/132 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F +LQGEG   G  + F R SGCNL           +C FCD+     + T     
Sbjct: 21  INELFASLQGEGKLVGVPSTFVRTSGCNL-----------RCWFCDSYHTSWEPTHAW-M 68

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP 124
            VD++   +        ++  + VLTGGEPL+  +  PL++ L + G+ + VETNGT+ P
Sbjct: 69  GVDEIVSAV------TARDPDHVVLTGGEPLIHDETAPLLERLAEHGYHVTVETNGTLVP 122

Query: 125 PQGIDWICVSPK 136
              ID   +SPK
Sbjct: 123 DAPIDLASISPK 134


>gi|331674271|ref|ZP_08375031.1| putative Organic radical activating enzyme [Escherichia coli TA280]
 gi|331068365|gb|EGI39760.1| putative Organic radical activating enzyme [Escherichia coli TA280]
          Length = 223

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 102/237 (43%), Gaps = 47/237 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I E+F TLQGEG   G  A+F R  GC          + W   E   +S       T 
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
               +  K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K GF 
Sbjct: 63  ----ESDKWGAASSEDLLAVIGRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKNGFS 114

Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168
             +ET+GT E    P    W+ VSPK    L ++GG E+     +     ++ +G   D 
Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYEVLSQALERANEIKHPVGRVRDI 168

Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E                 +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|74313345|ref|YP_311764.1| hypothetical protein SSON_2930 [Shigella sonnei Ss046]
 gi|73856822|gb|AAZ89529.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|323167196|gb|EFZ52913.1| radical SAM superfamily protein [Shigella sonnei 53G]
          Length = 223

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 102/237 (43%), Gaps = 47/237 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I E+F TLQGEG   G  A+F R  GC          + W   E   +S       T 
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
               +  K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K GF 
Sbjct: 63  ----ESDKWGAASSEDLLAVISRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114

Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168
             +ET+GT E    P    W+ VSPK    L ++GG ++     +     ++ +G   D 
Sbjct: 115 CQIETSGTHEVRCTPNT--WVTVSPK----LNMRGGYDVLSQALERANEIKHPVGRVRDI 168

Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E                 +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|261378237|ref|ZP_05982810.1| radical SAM domain protein [Neisseria cinerea ATCC 14685]
 gi|269145315|gb|EEZ71733.1| radical SAM domain protein [Neisseria cinerea ATCC 14685]
          Length = 212

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 99/221 (44%), Gaps = 36/221 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  A+F R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAIFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
            +++  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 54  TFDIMSLSDILGR---LKTYAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCIETNGLK 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFP-QVNVSPENY-IGFDFERFSLQP 175
             P  ID++  SPK     K     I    E+++V    V    EN        R+ L P
Sbjct: 111 PAPPQIDYVATSPKVCYADKYETNCIAEADEVRIVADGDVVAFCENMERKIRARRYYLSP 170

Query: 176 --MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
              +G     +T   I      P     W+LSVQTHK+ GI
Sbjct: 171 CEQNGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGI 211


>gi|325127637|gb|EGC50553.1| radical SAM domain protein [Neisseria meningitidis N1568]
 gi|325135881|gb|EGC58493.1| radical SAM domain protein [Neisseria meningitidis M0579]
 gi|325202682|gb|ADY98136.1| radical SAM domain protein [Neisseria meningitidis M01-240149]
 gi|325207572|gb|ADZ03024.1| radical SAM domain protein [Neisseria meningitidis NZ-05/33]
          Length = 212

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 54  TFGMMSLSDILGR---LKAYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I+   E+++      V+  + + F  + ER     
Sbjct: 111 PAPPQIDYVATSPKACYAAKYENSCIETADEVRI------VADGDVLAFCENMERKIRAH 164

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
            + L P   DG     +T   I      P     W+LSVQTHK+ GI
Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211


>gi|294669279|ref|ZP_06734358.1| radical SAM domain protein [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291308689|gb|EFE49932.1| radical SAM domain protein [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 212

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 101/227 (44%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           ++ +  L+D++           R  ++TGGEP +Q  +  L+      G+ + +ETNG  
Sbjct: 54  KFGMMSLSDILGR---LKTYAARNVIITGGEPTIQPHLDTLLDTFKAEGYFLCIETNGLK 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I    E+++      V+  + + F  + ER     
Sbjct: 111 PAPPQIDYVATSPKACYAAKYETNCITEADEVRI------VADGDVVAFCENMERKIRAR 164

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
            + L P   DG     +T   I      P     W+LSVQTHK+ GI
Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPAHWQLSVQTHKWAGI 211


>gi|109899267|ref|YP_662522.1| radical SAM family protein [Pseudoalteromonas atlantica T6c]
 gi|109701548|gb|ABG41468.1| Radical SAM [Pseudoalteromonas atlantica T6c]
          Length = 248

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 102/244 (41%), Gaps = 51/244 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF------ 54
           +  Y I E+F +LQGEG H G  ++F R  GC              C +CDT        
Sbjct: 23  LNTYKINEVFESLQGEGAHTGVPSIFIRLQGC-----------PVGCPWCDTKHTWEIDQ 71

Query: 55  ---VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC----VLTGGEPLLQVDVPLIQAL 107
              V          +  Q  +   EQ +   K+  Y     +LTGGEP +     L   L
Sbjct: 72  NLKVAAPVVMAQNEDTAQWFEHTPEQLLALFKQHEYTASNIILTGGEPCMYDLTDLSSVL 131

Query: 108 NKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSP 160
            + GF + +ET+GT E     D W+ VSPK    + + G ++ LK    + N     V+ 
Sbjct: 132 IENGFSVQIETSGTYEILTHPDTWVTVSPK----VNMPGKRDVLKSAMHRANEIKHPVAM 187

Query: 161 ENYI-----------GFDFER--FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
           E +I           G D  +    LQP+     +  T L I  C     WRLS+QTHKF
Sbjct: 188 EKHIEELEHVLTLLVGSDNPKPLIYLQPISQQ--KRATELCIKTCIAR-NWRLSLQTHKF 244

Query: 208 IGIR 211
           IGI 
Sbjct: 245 IGIE 248


>gi|161501996|ref|YP_001569108.1| hypothetical protein SARI_00012 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863343|gb|ABX19966.1| hypothetical protein SARI_00012 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 223

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 105/240 (43%), Gaps = 53/240 (22%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLW---SGREQDRLSAQCRFC 50
           Y I E+F TLQGEG   G  A+F R  GC          + W   S RE    S   +  
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLYSILAKTK 62

Query: 51  DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110
           ++D       K G  + + L  +I  Q    +   R+ V+TGGEP +   +PL   L K 
Sbjct: 63  ESD-------KWGAASSEDLLTVINRQ----DYTARHVVITGGEPCIHDLMPLTDLLEKS 111

Query: 111 GFEIAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG-- 165
           GF   +ET+GT E    P    W+ VSPK    + ++GG ++     +     ++ +G  
Sbjct: 112 GFSSQIETSGTHEVLCTPNT--WVTVSPK----VNMRGGYDVLTQALERANEIKHPVGRI 165

Query: 166 FDFERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            D E                 +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|37524702|ref|NP_928046.1| hypothetical protein plu0701 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784127|emb|CAE12996.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 223

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 99/240 (41%), Gaps = 51/240 (21%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDT 52
            Y I EIF TLQGEG   G  A+F R  GC          + W    + + + +     T
Sbjct: 2   FYPINEIFQTLQGEGFFTGVPAIFIRLQGCPVGCSWCDTKHTWEKEVEKQRTLETILLKT 61

Query: 53  DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF 112
                +  +  + +  Q+  L  +Q  T     R+ V+TGGEP L   +PL + L   G+
Sbjct: 62  S----ESNEWSKASPKQITALFVQQKYTA----RHVVITGGEPCLYDLIPLTEELESLGY 113

Query: 113 EIAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER- 170
           +  +ET+GT         W+ VSPK    + ++GG  +     Q  +   N I +   R 
Sbjct: 114 QCQIETSGTYHVKCSAATWVTVSPK----VNMRGGYRIL----QQALQRANEIKYPVARE 165

Query: 171 --------------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                                +LQP+     EE T L I  C     WR S+QTHK++ I
Sbjct: 166 RDIEALDELLATLNDNSSRIIALQPISQK--EEATRLCIETCIAR-NWRFSMQTHKYLNI 222


>gi|296104445|ref|YP_003614591.1| radical SAM domain-containing protein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058904|gb|ADF63642.1| radical SAM domain-containing protein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 223

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 99/234 (42%), Gaps = 41/234 (17%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT     +     
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51

Query: 64  RYNVDQLADLIE-EQWITGEKE------------GRYCVLTGGEPLLQVDVPLIQALNKR 110
                 LA   E ++W  G  E             R+ V+TGGEP +    PL + L K 
Sbjct: 52  VSLFSVLAKTKESDKWGAGSAEDLLAIIGRQGWTARHVVITGGEPCIHDLTPLTELLEKN 111

Query: 111 GFEIAVETNGTIEPP-QGIDWICVSPKA----GCDL---KIKGGQELKLVFPQVN---VS 159
           G+   +ET+GT E       W+ VSPK     G D+    ++   E+K    +V      
Sbjct: 112 GYSCQIETSGTHEVRCSHTTWVTVSPKVNMRGGYDVLSQALERADEIKHPVGRVRDIEAL 171

Query: 160 PENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            E       E+    +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 172 DELLATLTDEKQRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|332173072|gb|AEE22326.1| Radical SAM domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 248

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 105/248 (42%), Gaps = 59/248 (23%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF------ 54
           +  Y I E+F +LQGEG H G  ++F R  GC              C +CDT        
Sbjct: 23  LNTYKINEVFESLQGEGAHTGVPSIFIRLQGC-----------PVGCPWCDTKHTWEIDL 71

Query: 55  -VGIQGTKGGRYNVD----------QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
            + ++ +     NVD          QL DL  +   T        +LTGGEP +     L
Sbjct: 72  NLKVEASVVMAQNVDTEQWFEHTPKQLLDLFTQHGYTASN----IILTGGEPCMYDLTDL 127

Query: 104 IQALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN---- 157
              L + G+ + +ET+GT E     D W+ VSPK    + + G ++ LK    + N    
Sbjct: 128 SSVLIENGYSVQIETSGTYEIMAHPDTWVTVSPK----VNMPGKRDVLKSALLRANEIKH 183

Query: 158 -VSPENYI-----------GFDFER--FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQ 203
            V+ E +I           G +  +    LQP+     +  T L I  C     WRLS+Q
Sbjct: 184 PVAMEKHIEELDQVLTLLEGSNTTKPLIYLQPISQQ--KRATELCIKTCIAR-NWRLSLQ 240

Query: 204 THKFIGIR 211
           THKFIGI 
Sbjct: 241 THKFIGIE 248


>gi|72383130|ref|YP_292485.1| putative organic radical activating protein [Prochlorococcus
           marinus str. NATL2A]
 gi|72002980|gb|AAZ58782.1| possible organic radical activating enzyme [Prochlorococcus marinus
           str. NATL2A]
          Length = 213

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 94/232 (40%), Gaps = 53/232 (22%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F +LQGEG HAGR A F R + C +            C +CDT            +
Sbjct: 7   VVECFHSLQGEGEHAGRSAYFIRLASCKV-----------GCPWCDTK----DSWNSELH 51

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA-------LNKRGFEIAVET 118
               L DL  +     E+   + V+TGGEPL      L +        L K+   I +ET
Sbjct: 52  PQQSLIDLSTQTAKAQEEGAAFVVITGGEPLHHNLDDLCKEIRKSTLNLEKKSIPIHLET 111

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQV-----------------NV 158
           +G        DWI +SPK     ++      QELK+V                      +
Sbjct: 112 SGVDMLSGKPDWITLSPKRHSPPRLDNLLSCQELKVVIQNAEDLLFAKTMADSIKNNGKI 171

Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            P+ ++   +E            EE   LAI +   NP WRLS+QTHK++G+
Sbjct: 172 KPQLFLQAGWEN-----------EEGQTLAIKFVKNNPDWRLSMQTHKWLGV 212


>gi|16761723|ref|NP_457340.1| hypothetical protein STY3080 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16766257|ref|NP_461872.1| hypothetical protein STM2951 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29143207|ref|NP_806549.1| hypothetical protein t2852 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|161615872|ref|YP_001589837.1| hypothetical protein SPAB_03664 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167550190|ref|ZP_02343947.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167993197|ref|ZP_02574292.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168231033|ref|ZP_02656091.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168242700|ref|ZP_02667632.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168261911|ref|ZP_02683884.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168463900|ref|ZP_02697817.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168820338|ref|ZP_02832338.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194443979|ref|YP_002042196.1| hypothetical protein SNSL254_A3167 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194448254|ref|YP_002046911.1| radical SAM domain-containing protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194472830|ref|ZP_03078814.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197250818|ref|YP_002147853.1| radical SAM domain-containing protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197261663|ref|ZP_03161737.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198243481|ref|YP_002216919.1| radical SAM domain-containing protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200387574|ref|ZP_03214186.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205353891|ref|YP_002227692.1| hypothetical protein SG2855 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858211|ref|YP_002244862.1| hypothetical protein SEN2790 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213022667|ref|ZP_03337114.1| hypothetical protein Salmonelentericaenterica_08538 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
 gi|213163461|ref|ZP_03349171.1| hypothetical protein Salmoneentericaenterica_26915 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213424925|ref|ZP_03357675.1| hypothetical protein SentesTyphi_03996 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213648292|ref|ZP_03378345.1| hypothetical protein SentesTy_13994 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213852988|ref|ZP_03382520.1| hypothetical protein SentesT_09066 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224584735|ref|YP_002638533.1| hypothetical protein SPC_3001 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238909725|ref|ZP_04653562.1| hypothetical protein SentesTe_01135 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289811290|ref|ZP_06541919.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|289829811|ref|ZP_06547326.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25511883|pir||AB0859 conserved hypothetical protein STY3080 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421502|gb|AAL21831.1| putative organic radical activating enzymes [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|16504024|emb|CAD06057.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138840|gb|AAO70409.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|161365236|gb|ABX69004.1| hypothetical protein SPAB_03664 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402642|gb|ACF62864.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194406558|gb|ACF66777.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194459194|gb|EDX48033.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|195633215|gb|EDX51629.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197214521|gb|ACH51918.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197239918|gb|EDY22538.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197937997|gb|ACH75330.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199604672|gb|EDZ03217.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205273672|emb|CAR38662.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205324832|gb|EDZ12671.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205328757|gb|EDZ15521.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205334576|gb|EDZ21340.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205338143|gb|EDZ24907.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205342895|gb|EDZ29659.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205349084|gb|EDZ35715.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206710014|emb|CAR34369.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224469262|gb|ACN47092.1| hypothetical protein SPC_3001 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261248086|emb|CBG25921.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995084|gb|ACY89969.1| hypothetical protein STM14_3556 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159510|emb|CBW19029.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913972|dbj|BAJ37946.1| hypothetical protein STMDT12_C30030 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087368|emb|CBY97133.1| probable molybdenum cofactor biosynthesis protein A [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321225630|gb|EFX50684.1| Queuosine Biosynthesis QueE Radical SAM [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323131307|gb|ADX18737.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|326624683|gb|EGE31028.1| Radical SAM domain containing protein [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326629003|gb|EGE35346.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 223

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 106/241 (43%), Gaps = 55/241 (22%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLW---SGREQDRLSAQCRFC 50
           Y I E+F TLQGEG   G  A+F R  GC          + W   S RE    S   +  
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTK 62

Query: 51  DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110
           ++D       K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K 
Sbjct: 63  ESD-------KWGAASSEDLLAVINRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKS 111

Query: 111 GFEIAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVNVSPENYIG- 165
           GF   +ET+GT E    P    W+ VSPK    + ++GG + L     + N   ++ +G 
Sbjct: 112 GFSCQIETSGTHEVRCTPNT--WVTVSPK----VNMRGGYDVLSQALERAN-EIKHPVGR 164

Query: 166 -FDFERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
             D E                 +LQP+     E+ T L I  C     WRLS+QTHK++ 
Sbjct: 165 VRDIEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLN 221

Query: 210 I 210
           I
Sbjct: 222 I 222


>gi|322614241|gb|EFY11173.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620945|gb|EFY17803.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624008|gb|EFY20842.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628253|gb|EFY25042.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633372|gb|EFY30114.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636051|gb|EFY32759.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639387|gb|EFY36075.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322643751|gb|EFY40302.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648214|gb|EFY44680.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656959|gb|EFY53244.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658025|gb|EFY54293.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664126|gb|EFY60325.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322673792|gb|EFY69891.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322677866|gb|EFY73929.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681040|gb|EFY77073.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685637|gb|EFY81631.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323194776|gb|EFZ79963.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323200478|gb|EFZ85557.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323205060|gb|EFZ90043.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207739|gb|EFZ92685.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323214808|gb|EFZ99556.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222537|gb|EGA06902.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323226417|gb|EGA10625.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230704|gb|EGA14822.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323234945|gb|EGA19031.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238984|gb|EGA23034.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244658|gb|EGA28664.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247274|gb|EGA31240.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251806|gb|EGA35671.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257493|gb|EGA41183.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263278|gb|EGA46815.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267530|gb|EGA51014.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272719|gb|EGA56125.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 223

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 106/241 (43%), Gaps = 55/241 (22%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLW---SGREQDRLSAQCRFC 50
           Y I E+F TLQGEG   G  A+F R  GC          + W   S RE    S   +  
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTK 62

Query: 51  DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110
           ++D       K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K 
Sbjct: 63  ESD-------KWGAASSEDLLAVINRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKS 111

Query: 111 GFEIAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVNVSPENYIG- 165
           GF   +ET+GT E    P    W+ VSPK    + ++GG + L     + N   ++ +G 
Sbjct: 112 GFSCQIETSGTHEVCCTPNT--WVTVSPK----VNMRGGYDVLSQALERAN-EIKHPVGR 164

Query: 166 -FDFERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
             D E                 +LQP+     E+ T L I  C     WRLS+QTHK++ 
Sbjct: 165 VRDIEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLN 221

Query: 210 I 210
           I
Sbjct: 222 I 222


>gi|89073954|ref|ZP_01160460.1| putative organic radical activating enzyme [Photobacterium sp.
           SKA34]
 gi|89050282|gb|EAR55786.1| putative organic radical activating enzyme [Photobacterium sp.
           SKA34]
          Length = 222

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 103/236 (43%), Gaps = 43/236 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTD-FVGIQ 58
           +Y I E+F T+QGEG   G  A+F R   C +   W   +Q   +      + D  +   
Sbjct: 1   MYKINEVFETIQGEGVFTGVPAIFVRLQVCPVGCSWCDTKQTWTAEPQDLANLDQIMAKT 60

Query: 59  GTKGGRYNVDQ--LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
           G      N+D   +  L+++Q  T     ++ V+TGGEP +    PL QAL   GF   +
Sbjct: 61  GDSPLWTNLDANGVVQLLQDQKYTA----KHVVITGGEPCIYDLRPLTQALEDAGFNCQI 116

Query: 117 ETNGT--IEPPQGIDWICVSPKAGCDLKI--------------------KGGQELKLVFP 154
           ET+GT  I+  +   W+ VSPK     K+                    K  ++L  +  
Sbjct: 117 ETSGTSDIQTSENT-WVTVSPKINMKAKLPVLVSSLARANEIKHPVGTSKDIEQLDALID 175

Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            V + P+  I       +LQP+        T L I  C Q   WRLS+QTHK++ I
Sbjct: 176 GVTLKPDVTI-------ALQPISQK--PRATELCIETCIQR-NWRLSIQTHKYLAI 221


>gi|228473183|ref|ZP_04057938.1| radical SAM domain protein [Capnocytophaga gingivalis ATCC 33624]
 gi|228275333|gb|EEK14125.1| radical SAM domain protein [Capnocytophaga gingivalis ATCC 33624]
          Length = 200

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 99/223 (44%), Gaps = 43/223 (19%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + E F T+QGEG + G  A F R +GC++            C +CD        +  
Sbjct: 5   ILPLMEDFYTIQGEGFYRGTAAYFIRLAGCDV-----------GCHWCDVK-ESWDASVH 52

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
            R  ++++A              +  ++TGGEPL+    PL + L  +G    +ET+G  
Sbjct: 53  PRVPIEEIAQ-------RALAHSKTIIITGGEPLMYNLQPLTELLKSKGARTHIETSGA- 104

Query: 123 EPPQGI-DWICVSPKAGCDLKIKGGQ---ELKLVFPQVNVSPENYIGFDF-ERFS----- 172
            P  G+ DWIC+SPK       +  Q   ELK++         N+  F F E  S     
Sbjct: 105 HPLTGVWDWICLSPKKNKRPLPEVHQRASELKMII-------YNHHDFLFAEEMSALTQP 157

Query: 173 -----LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                LQP +    E    L + Y  +NP+W++S+Q HK++ I
Sbjct: 158 DCIRYLQP-EWSRRERMVPLIVDYVMENPQWKISLQMHKYLDI 199


>gi|116619443|ref|YP_821599.1| radical SAM domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116222605|gb|ABJ81314.1| Radical SAM domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 224

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 19/132 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F ++QGEG   G  +VF R SGCNL           +C +CDT +   +  +G   
Sbjct: 3   IAELFYSIQGEGALLGVPSVFIRTSGCNL-----------RCSWCDTPYTSWR-PEGTDL 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            ++Q+ D +      G    R+ V+TGGEP++  D V L Q L  R   I +ET GT+  
Sbjct: 51  TLEQILDEV------GAHPARHVVVTGGEPMIAPDIVALTQRLRARNLHITIETAGTVFE 104

Query: 125 PQGIDWICVSPK 136
           P   D + +SPK
Sbjct: 105 PVACDLMSISPK 116


>gi|168235995|ref|ZP_02661053.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194736116|ref|YP_002115902.1| radical SAM domain-containing protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|204928010|ref|ZP_03219210.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|194711618|gb|ACF90839.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197290769|gb|EDY30123.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204322332|gb|EDZ07529.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 223

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 107/236 (45%), Gaps = 45/236 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLW---SGREQDRLSAQCRFC 50
           Y I E+F TLQGEG   G  A+F R  GC          + W   S RE    S   +  
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTK 62

Query: 51  DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110
           ++D       K G  + + L  +I  Q    +   R+ V+TGGEP +   +PL   L K 
Sbjct: 63  ESD-------KWGAASSEDLLAVINRQ----DYTARHVVITGGEPCIHDLMPLTDLLEKS 111

Query: 111 GFEIAVETNGTIE---PPQGIDWICVSPKA----GCDL---KIKGGQELKLVFPQV-NVS 159
           GF   +ET+GT E    P    W+ VSPK     G D+    ++   E+K    +V ++ 
Sbjct: 112 GFSCQIETSGTHEVRCTPNT--WVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIE 169

Query: 160 PEN----YIGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             +     +  D  R  +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 170 ALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|123441108|ref|YP_001005097.1| hypothetical protein YE0753 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088069|emb|CAL10857.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 223

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 103/233 (44%), Gaps = 39/233 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60
           Y I E+F TLQGEG   G  A+F R  GC +   W   +        R  D   + ++  
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKEADREVDMQRIMVKTV 62

Query: 61  KGGRYNV---DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +   +      QL ++  +Q  T     R+ V+TGGEP +    PL   L + G+   +E
Sbjct: 63  ESDAWATASEQQLLNIFSQQGYT----ARHVVITGGEPAIYDLFPLTTQLEQAGYSCQIE 118

Query: 118 TNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE--------------- 161
           T+GT E       W+ VSPK    + ++GG  LK++   +  + E               
Sbjct: 119 TSGTHEVQCSAATWVTVSPK----VNMRGG--LKVLPQALQRADEIKHPVGRLRDIEALE 172

Query: 162 ---NYIGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                +  D +R  +LQP+     +E T L I  C     WRLS+QTHK++ I
Sbjct: 173 QLLETLTDDKKRIIALQPISQK--DEATKLCIETCIAK-NWRLSMQTHKYLNI 222


>gi|325133661|gb|EGC56318.1| radical SAM domain protein [Neisseria meningitidis M13399]
 gi|325143843|gb|EGC66158.1| radical SAM domain protein [Neisseria meningitidis M01-240013]
 gi|325206619|gb|ADZ02072.1| radical SAM domain protein [Neisseria meningitidis M04-240196]
          Length = 212

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 54  TFGMMSLSDILG---CLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I+   E+++      V+  + + F  + ER     
Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDVVAFCENMERKIRAH 164

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
            + L P   DG     +T   I      P     W+LSVQTHK+ GI
Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGI 211


>gi|15921783|ref|NP_377452.1| hypothetical protein ST1490 [Sulfolobus tokodaii str. 7]
 gi|15622570|dbj|BAB66561.1| 212aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 212

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 74/140 (52%), Gaps = 23/140 (16%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y I EIF ++QGEG   G  + F R +GC+L           +C +CDT +      
Sbjct: 1   MVKYWISEIFTSIQGEGEVIGTPSNFIRLAGCHL-----------RCIWCDTKYAW-HKY 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
            G   +++Q+ D I+       K  ++  +TGGEPLLQ  +PL++AL     ++ VET+G
Sbjct: 49  DGEEMSIEQILDKID-------KRIKFTTITGGEPLLQDILPLVEALKSLNHKVLVETSG 101

Query: 121 TIEPPQG----IDWICVSPK 136
           TI+P +     +D   VSPK
Sbjct: 102 TIKPSKKLRELVDIFSVSPK 121


>gi|300724656|ref|YP_003713981.1| putative coenzyme PQQ synthesis protein with nitrogenase
           iron-molybdenum domain [Xenorhabdus nematophila ATCC
           19061]
 gi|297631198|emb|CBJ91893.1| putative coenzyme PQQ synthesis protein with nitrogenase
           iron-molybdenum domain [Xenorhabdus nematophila ATCC
           19061]
          Length = 223

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 108/243 (44%), Gaps = 57/243 (23%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLW---SGREQDRLSAQCRF 49
           +Y I EIF TLQGEG   G  +VF R  GC          + W   + ++Q   +   + 
Sbjct: 2   IYPINEIFQTLQGEGVFTGVPSVFVRLQGCPVGCSWCDTKHTWEKDADKQQVMENILLKT 61

Query: 50  CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
            D+D  G+   K       QL ++   Q  +     R+ V+TGGEP L    PL + L +
Sbjct: 62  RDSDLWGVATAK-------QLINIFTRQGYSA----RHIVITGGEPCLYDLRPLTETLER 110

Query: 110 RGFEIAVETNGTIEPPQGID--WICVSPKAGCDLKIKGGQELKLVFPQ------------ 155
            G++  +ET+GT    Q  D  W+ VSPK    +K++GG +   V P+            
Sbjct: 111 EGYQCQIETSGT-HSIQCSDKTWVTVSPK----VKMRGGYK---VLPEAMKRADEIKHPV 162

Query: 156 -----VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
                +    E  +  D +     +LQP+     EE T L I  C     WR S+QTHK+
Sbjct: 163 GRERDIEALDELLVMLDGKSSPVIALQPISQK--EEATRLCIETCIAR-NWRFSMQTHKY 219

Query: 208 IGI 210
           + I
Sbjct: 220 LHI 222


>gi|91070512|gb|ABE11419.1| putative organic radical activating enzyme [uncultured
           Prochlorococcus marinus clone HOT0M-3E5]
          Length = 225

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 100/234 (42%), Gaps = 51/234 (21%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           E F +LQGEG HAG+ A F R +GC +            C +CDT        K    ++
Sbjct: 11  EQFHSLQGEGYHAGKSAFFIRLAGCKV-----------GCSWCDTK-NSWDEKKHPSISI 58

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGFEIAVETNG 120
           +++ D I+   I  +K   +CV+TGGEPL        +A+ K       +  +I +ET+G
Sbjct: 59  EKIIDRIK---IARKKGASFCVITGGEPLQHNLDNFCKAIKKMTMGEEQKPMKIHIETSG 115

Query: 121 TIEPPQGIDWICVSPK----------AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
                   DWI +SPK            C+       E++ +   + +  E    +   +
Sbjct: 116 VNSISGSYDWITLSPKRHSPPKNYFLKNCNEIKIIINEIEDIEFAIQIKNETLKQYQISK 175

Query: 171 -----------FSLQPMDGPFLEENTN---LAISYCFQNPKWRLSVQTHKFIGI 210
                      F LQP        N N   LAI +   NP W+LS+QTHK++ I
Sbjct: 176 SEDGLKKEDKIFYLQPA-----WNNANGFSLAIDFVKNNPDWKLSLQTHKYLKI 224


>gi|191166820|ref|ZP_03028646.1| conserved hypothetical protein [Escherichia coli B7A]
 gi|190903191|gb|EDV62914.1| conserved hypothetical protein [Escherichia coli B7A]
          Length = 223

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 102/237 (43%), Gaps = 47/237 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I E+F TLQGEG   G  A+F R  GC          + W   E   +S       T 
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
               +  K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K GF 
Sbjct: 63  ----ESDKWGSASSEDLLAVIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLKKNGFS 114

Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168
             +ET+GT E    P    W+ VSPK    L ++GG ++     +     ++ +G   D 
Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYDVLSQALERANEIKHPVGRVRDI 168

Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E                 +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|56460021|ref|YP_155302.1| organic radical activating protein [Idiomarina loihiensis L2TR]
 gi|56179031|gb|AAV81753.1| Organic radical activating enzyme [Idiomarina loihiensis L2TR]
          Length = 233

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 103/238 (43%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT---------DF 54
           Y I EIF TLQGEG   G  ++F R  GC +            C +CDT         D 
Sbjct: 13  YRINEIFETLQGEGTFTGVPSIFLRLQGCPV-----------GCPWCDTQHTWETNPTDQ 61

Query: 55  VGIQGTKGGRYNVDQLADLIEEQWITG-EKEG---RYCVLTGGEPLLQVDVPLIQALNKR 110
           V I           + +++  E  I   E+EG   ++ V+TGGEP +   +PL +AL  +
Sbjct: 62  VSIDALMAKTEASAKWSEMTAEDIIARFEQEGYSAKHVVITGGEPAMFDLLPLGKALEAK 121

Query: 111 GFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIKGGQELK---------LVFPQVNVSP 160
           G+++ +ET+GT E       W+ VSPK    L + GG  ++         +  P      
Sbjct: 122 GYQLQIETSGTFELKVTDSTWVTVSPK----LDMPGGYLVRPDCMARANEIKHPIAMQKH 177

Query: 161 ENYIGFDFER--------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + +    ER          LQP+        T LA+  C     WRLSVQ HK++ I
Sbjct: 178 IDALDSLLERCPPKADAIICLQPISQ--RPRATELAMKTCIAR-NWRLSVQMHKYLNI 232


>gi|261393100|emb|CAX50697.1| conserved hypothetical protein [Neisseria meningitidis 8013]
 gi|325203620|gb|ADY99073.1| radical SAM domain protein [Neisseria meningitidis M01-240355]
          Length = 212

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 54  TFGMMSLSDILG---CLKTYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I+   E+++      V+  + + F  + ER     
Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDVLAFCENMERKIRAH 164

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
            + L P   DG     +T   I      P     W+LSVQTHK+ GI
Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211


>gi|330834175|ref|YP_004408903.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4]
 gi|329566314|gb|AEB94419.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4]
          Length = 210

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 74/154 (48%), Gaps = 28/154 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF ++QGEG   GR + F R +GCNL           +C +CDT        K  
Sbjct: 3   YWIVEIFTSIQGEGTLIGRPSNFVRLAGCNL-----------RCVWCDT--------KNS 43

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
               D     IE+         ++  +TGGEPLLQ  +PL  +L  +GF +A+ETNGT++
Sbjct: 44  WMREDGEPMEIEDILSKLSTSVKWTTITGGEPLLQDILPLAVSLKNKGFRVAIETNGTLK 103

Query: 124 PP----QGIDWICVSPKAGCDLKIKGGQELKLVF 153
           P     + +D   VSPK      +  G  LK  F
Sbjct: 104 PKPELRKVVDIFSVSPKL-----LNSGHRLKYDF 132


>gi|170726897|ref|YP_001760923.1| radical activating enzyme [Shewanella woodyi ATCC 51908]
 gi|169812244|gb|ACA86828.1| radical activating enzyme [Shewanella woodyi ATCC 51908]
          Length = 222

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 102/244 (41%), Gaps = 62/244 (25%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54
           Y + E+F T+QGEG + G  A+F R  GC +            C +CDT           
Sbjct: 3   YPVNEVFETIQGEGFYTGVPAIFVRLQGCPV-----------GCSWCDTKHTWELLDVNK 51

Query: 55  ------VGIQGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                 + + GT G        +L   ++++  T      + V+TGGEP L     + + 
Sbjct: 52  VQPEMVIQVDGTIGRWSELTTSELISFLKQKEFTAS----HVVITGGEPCLHDLTAMTEE 107

Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQV--------- 156
            N  G+   +ET+GT E       W+ VSPK    LK+K G     V PQ          
Sbjct: 108 FNDAGYSTQIETSGTFEVHCSEKTWVTVSPK----LKMKAGLA---VLPQALKRANEIKH 160

Query: 157 NVSPENYI--------GFDF--ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHK 206
            V+  ++I        G D   +   LQP+        T LA+  C +   WRLS+QTHK
Sbjct: 161 PVATASHIDDLDELLNGVDLKGKTICLQPISQK--TRATELAMRVCIER-NWRLSIQTHK 217

Query: 207 FIGI 210
           ++ I
Sbjct: 218 YLDI 221


>gi|238750569|ref|ZP_04612069.1| hypothetical protein yrohd0001_3960 [Yersinia rohdei ATCC 43380]
 gi|238711217|gb|EEQ03435.1| hypothetical protein yrohd0001_3960 [Yersinia rohdei ATCC 43380]
          Length = 225

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 102/234 (43%), Gaps = 41/234 (17%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60
           Y I E+F TLQGEG   G  A+F R  GC +   W   +     A  R  D   + ++  
Sbjct: 5   YPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKAANREVDLQRILVKTA 64

Query: 61  KG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +    G  +  Q+ D+  +Q  T     R+ V+TGGEP +    PL   L + G+   +E
Sbjct: 65  ESDAWGNASEQQVLDIFIQQGYT----ARHVVITGGEPAIYDLRPLTSHLEQAGYSCQIE 120

Query: 118 TNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE--------------- 161
           T+GT         W+ VSPK    + ++GG +   V PQ     +               
Sbjct: 121 TSGTHAVQCSPTTWVTVSPK----VNMRGGMK---VLPQALQRADEIKHPVGRLRDIEAL 173

Query: 162 ----NYIGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                 +  D +R  +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 174 ELLLQTLDDDKKRIIALQPISQK--EDATKLCIETCIAK-NWRLSMQTHKYLNI 224


>gi|212635182|ref|YP_002311707.1| Radical activating enzyme [Shewanella piezotolerans WP3]
 gi|212556666|gb|ACJ29120.1| Radical activating enzyme [Shewanella piezotolerans WP3]
          Length = 222

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 107/238 (44%), Gaps = 50/238 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y + E+F T+QGEG   G  A+F R  GC          + W   E++R++ +       
Sbjct: 3   YPVNEVFETIQGEGYFTGVPAIFVRLQGCPVGCAWCDTKHTWDVIEENRVAPEL------ 56

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKE----GRYCVLTGGEPLLQVDVPLIQALNK 109
            + + GT G      + ++L  EQ +   K      ++ V+TGGEP +         L++
Sbjct: 57  VIQVDGTIG------RWSELSSEQLVAAFKSKGFTAKHIVITGGEPCMYDLTEFTHYLHQ 110

Query: 110 RGFEIAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPEN 162
            G++  +ET+GT E       W+ VSPK    + +KGG + L     + N     ++  N
Sbjct: 111 MGYQTQIETSGTFEVACDSGTWVTVSPK----INMKGGYKVLAQALERANEIKHPIATRN 166

Query: 163 Y----------IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +          I  + +   LQP+        T LA+  C +   WRLS+QTHK++ I
Sbjct: 167 HIDELDELLADIDINDKTVCLQPISQK--ARATELAMKTCIER-NWRLSIQTHKYLDI 221


>gi|298207940|ref|YP_003716119.1| hypothetical protein CA2559_06800 [Croceibacter atlanticus
           HTCC2559]
 gi|83850581|gb|EAP88449.1| hypothetical protein CA2559_06800 [Croceibacter atlanticus
           HTCC2559]
          Length = 210

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 33/219 (15%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           K+  + E F T+QGEG H G  A F R  GC++            C +CD      +   
Sbjct: 14  KMLPLMEEFYTIQGEGYHKGTAAYFIRIGGCDV-----------GCHWCDVK----ESWD 58

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
             ++       ++ E      K  +  V+TGGEPL      L Q L   G +  +ET+G 
Sbjct: 59  AEKHPPTATERIVSE----AVKYSKTIVVTGGEPLTWDMTLLTQMLKAEGAQTHIETSGA 114

Query: 122 IEPPQGIDWICVSPKAGCDLKI------KGGQELKLVF---PQVNVSPENYIGFDFE-RF 171
                  DWIC+SPK    LK+      +   ELK++      +  + E     + +   
Sbjct: 115 YTLTGKWDWICLSPK---KLKLPTKEVYEKANELKVIIFNKHDLKFAEEQAAKVNKDCIL 171

Query: 172 SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            LQP +    ++   L + +   NP+W++S+QTHK++ I
Sbjct: 172 YLQP-EWSVRDKVVPLIVDFVMANPQWKVSLQTHKYLNI 209


>gi|218555326|ref|YP_002388239.1| hypothetical protein ECIAI1_2883 [Escherichia coli IAI1]
 gi|300820561|ref|ZP_07100712.1| radical SAM domain protein [Escherichia coli MS 119-7]
 gi|309795241|ref|ZP_07689660.1| radical SAM domain protein [Escherichia coli MS 145-7]
 gi|331669510|ref|ZP_08370356.1| putative Organic radical activating enzyme [Escherichia coli TA271]
 gi|331678753|ref|ZP_08379427.1| putative Organic radical activating enzyme [Escherichia coli H591]
 gi|218362094|emb|CAQ99703.1| conserved hypothetical protein [Escherichia coli IAI1]
 gi|300526825|gb|EFK47894.1| radical SAM domain protein [Escherichia coli MS 119-7]
 gi|308121212|gb|EFO58474.1| radical SAM domain protein [Escherichia coli MS 145-7]
 gi|320202418|gb|EFW76988.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli EC4100B]
 gi|331063178|gb|EGI35091.1| putative Organic radical activating enzyme [Escherichia coli TA271]
 gi|331073583|gb|EGI44904.1| putative Organic radical activating enzyme [Escherichia coli H591]
          Length = 223

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 102/237 (43%), Gaps = 47/237 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I E+F TLQGEG   G  A+F R  GC          + W   E   +S       T 
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
               +  K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K GF 
Sbjct: 63  ----ESDKWGSASSEDLLAVIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114

Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168
             +ET+GT E    P    W+ VSPK    L ++GG ++     +     ++ +G   D 
Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYDVLSQALERANEIKHPVGRVRDI 168

Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E                 +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|149276391|ref|ZP_01882535.1| hypothetical protein PBAL39_01687 [Pedobacter sp. BAL39]
 gi|149232911|gb|EDM38286.1| hypothetical protein PBAL39_01687 [Pedobacter sp. BAL39]
          Length = 193

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 36/215 (16%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           E F T+QGEG + G+ A F R  GC++            C +CD      +      + +
Sbjct: 2   EEFYTIQGEGFNTGKAAYFIRLGGCDV-----------GCHWCDVK----ESWDAELHPL 46

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQG 127
               D++E+        G+  V+TGGEPL+     L + L +R     +ET+G       
Sbjct: 47  TAADDIVEK---ADSFPGKAVVITGGEPLIYNLDYLTRKLRERNILTFIETSGAYPLSGS 103

Query: 128 IDWICVSPKAGCDLKIKG--------GQELK-LVFPQVNVS-PENYIGFDFE--RFSLQP 175
            DWIC+SPK     K K           ELK ++F + +    E Y     +  +  LQP
Sbjct: 104 WDWICLSPK-----KFKAPRPDITPFANELKVIIFNKSDFKWAEQYAETVSKNCKLYLQP 158

Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +    +E T + I Y   NPKW +S+QTHK++ I
Sbjct: 159 -EWSKSKEITPMIIEYVMANPKWEISLQTHKYLNI 192


>gi|269138400|ref|YP_003295100.1| radical SAM domain protein [Edwardsiella tarda EIB202]
 gi|267984060|gb|ACY83889.1| radical SAM domain protein [Edwardsiella tarda EIB202]
 gi|304558427|gb|ADM41091.1| Queuosine Biosynthesis QueE Radical SAM [Edwardsiella tarda FL6-60]
          Length = 223

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 102/246 (41%), Gaps = 65/246 (26%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R  GC +            C +CD+     Q  +  
Sbjct: 3   YPINEIFQSLQGEGFYTGVPAVFIRLQGCPV-----------GCSWCDSQHTWHQRPECQ 51

Query: 64  RYNVDQLADLIEEQWITGEKE--------------------GRYCVLTGGEPLLQVDVPL 103
                 LA ++E+   T E E                     R+ V+TGGEP +   +PL
Sbjct: 52  ----ADLAQIVEK---TAESEAWASADAAALVALLRQRGYQARHVVITGGEPCMHDLLPL 104

Query: 104 IQALNKRGFEIAVETNGTIEPPQ--GIDWICVSPKAGCDLKIKGGQEL---------KLV 152
             AL + G+   +ET+GT  P +     W+ VSPK G    ++GG  +         ++ 
Sbjct: 105 TTALEQGGYRCQIETSGT-HPVRCSAQTWVTVSPKVG----MRGGMTVLTDALRRANEIK 159

Query: 153 FPQVNVSPENYIGFDFERF--------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQT 204
            P         +     R         +LQP+     EE T L I  C     WRLS+QT
Sbjct: 160 HPVARARDIEALDALLARLDGELPPVVALQPISCK--EEATRLCIETCLAR-NWRLSMQT 216

Query: 205 HKFIGI 210
           HK++ I
Sbjct: 217 HKYLNI 222


>gi|261401297|ref|ZP_05987422.1| radical SAM domain protein [Neisseria lactamica ATCC 23970]
 gi|269208675|gb|EEZ75130.1| radical SAM domain protein [Neisseria lactamica ATCC 23970]
          Length = 212

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 54  TFGMMSLSDILGR---LKAYAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I    E+++      V+  + + F  + ER     
Sbjct: 111 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRI------VADGDVLAFCENMERKIRAR 164

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
            + L P   +G     +T   I      P     W+LSVQTHK+ GI
Sbjct: 165 HYYLSPCEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211


>gi|161869455|ref|YP_001598622.1| hypothetical protein NMCC_0466 [Neisseria meningitidis 053442]
 gi|161595008|gb|ABX72668.1| conserved hypothetical protein [Neisseria meningitidis 053442]
          Length = 212

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 54  TFGMMSLSDILG---CLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I+   E+++      V+  + + F  + ER     
Sbjct: 111 PAPPQIDYVATSPKACYAAKYENSCIETADEVRI------VADGDVLAFCENMERKIRAH 164

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
            + L P   DG     +T   I      P     W+LSVQTHK+ GI
Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211


>gi|319409907|emb|CBY90232.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
          Length = 212

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 54  TFGMMSLSDILG---CLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I+   E+++      V+  + + F  + ER     
Sbjct: 111 PAPPQIDYVATSPKACYAAKYENSCIETADEVRI------VADGDVLAFCENMERKIRAH 164

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
            + L P   DG     +T   I      P     W+LSVQTHK+ GI
Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGI 211


>gi|325103801|ref|YP_004273455.1| Radical SAM domain protein [Pedobacter saltans DSM 12145]
 gi|324972649|gb|ADY51633.1| Radical SAM domain protein [Pedobacter saltans DSM 12145]
          Length = 207

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 28/216 (12%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + E F T+QGEG + G+ A F R  GC++            C +CD     ++ +  
Sbjct: 11  MLPLMEEFYTIQGEGFNTGKAAYFIRLGGCDV-----------GCHWCD-----VKESWD 54

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              +    AD I E     +  G+  V+TGGEPLL     L   L ++G    +ET+G  
Sbjct: 55  AELHPLTSADKIVEN--AEKYPGKAVVITGGEPLLYNLDYLTAKLKEKGILTFIETSGAY 112

Query: 123 EPPQGIDWICVSPK---AGCDLKIKGGQELKL-VFPQVNV----SPENYIGFDFERFSLQ 174
                 DW+C+SPK   +      +   ELK+ VF + +     +    +G D  +  LQ
Sbjct: 113 PISGSWDWVCLSPKKFKSPSPNIAQHADELKIIVFNKSDFEWAEAHARTVG-DKCKLYLQ 171

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P +    ++   L I Y  +NPKW +S+QTHK++ I
Sbjct: 172 P-EWSKSQDMLPLIIEYVKENPKWEISLQTHKYLNI 206


>gi|82545074|ref|YP_409021.1| hypothetical protein SBO_2656 [Shigella boydii Sb227]
 gi|187733920|ref|YP_001881485.1| hypothetical protein SbBS512_E3099 [Shigella boydii CDC 3083-94]
 gi|193065022|ref|ZP_03046097.1| conserved hypothetical protein [Escherichia coli E22]
 gi|209920225|ref|YP_002294309.1| hypothetical protein ECSE_3034 [Escherichia coli SE11]
 gi|256019438|ref|ZP_05433303.1| hypothetical protein ShiD9_11027 [Shigella sp. D9]
 gi|260845423|ref|YP_003223201.1| hypothetical protein ECO103_3320 [Escherichia coli O103:H2 str.
           12009]
 gi|260856887|ref|YP_003230778.1| hypothetical protein ECO26_3847 [Escherichia coli O26:H11 str.
           11368]
 gi|260869456|ref|YP_003235858.1| hypothetical protein ECO111_3501 [Escherichia coli O111:H- str.
           11128]
 gi|300815807|ref|ZP_07096031.1| radical SAM domain protein [Escherichia coli MS 107-1]
 gi|300923910|ref|ZP_07139923.1| radical SAM domain protein [Escherichia coli MS 182-1]
 gi|301325508|ref|ZP_07218983.1| radical SAM domain protein [Escherichia coli MS 78-1]
 gi|81246485|gb|ABB67193.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|187430912|gb|ACD10186.1| conserved hypothetical protein [Shigella boydii CDC 3083-94]
 gi|192927319|gb|EDV81938.1| conserved hypothetical protein [Escherichia coli E22]
 gi|209913484|dbj|BAG78558.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|257755536|dbj|BAI27038.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368]
 gi|257760570|dbj|BAI32067.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009]
 gi|257765812|dbj|BAI37307.1| conserved predicted protein [Escherichia coli O111:H- str. 11128]
 gi|300419842|gb|EFK03153.1| radical SAM domain protein [Escherichia coli MS 182-1]
 gi|300531736|gb|EFK52798.1| radical SAM domain protein [Escherichia coli MS 107-1]
 gi|300847675|gb|EFK75435.1| radical SAM domain protein [Escherichia coli MS 78-1]
 gi|320183542|gb|EFW58388.1| Queuosine Biosynthesis QueE Radical SAM [Shigella flexneri CDC
           796-83]
 gi|323155006|gb|EFZ41198.1| radical SAM superfamily protein [Escherichia coli EPECa14]
 gi|323159909|gb|EFZ45879.1| radical SAM superfamily protein [Escherichia coli E128010]
 gi|323180206|gb|EFZ65758.1| radical SAM superfamily protein [Escherichia coli 1180]
 gi|324016296|gb|EGB85515.1| radical SAM domain protein [Escherichia coli MS 117-3]
 gi|332092167|gb|EGI97245.1| radical SAM superfamily protein [Shigella boydii 3594-74]
 gi|332102910|gb|EGJ06256.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 223

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 102/237 (43%), Gaps = 47/237 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I E+F TLQGEG   G  A+F R  GC          + W   E   +S       T 
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
               +  K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K GF 
Sbjct: 63  ----ESDKWGAASSEDLLAVIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114

Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168
             +ET+GT E    P    W+ VSPK    L ++GG ++     +     ++ +G   D 
Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYDVLSQALERANEIKHPVGRVRDI 168

Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E                 +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|227827777|ref|YP_002829557.1| radical SAM protein [Sulfolobus islandicus M.14.25]
 gi|227830487|ref|YP_002832267.1| radical SAM protein [Sulfolobus islandicus L.S.2.15]
 gi|229579299|ref|YP_002837697.1| Radical SAM domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|229581941|ref|YP_002840340.1| Radical SAM domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|229585048|ref|YP_002843550.1| Radical SAM domain protein [Sulfolobus islandicus M.16.27]
 gi|238619949|ref|YP_002914775.1| Radical SAM domain protein [Sulfolobus islandicus M.16.4]
 gi|284997981|ref|YP_003419748.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5]
 gi|227456935|gb|ACP35622.1| Radical SAM domain protein [Sulfolobus islandicus L.S.2.15]
 gi|227459573|gb|ACP38259.1| Radical SAM domain protein [Sulfolobus islandicus M.14.25]
 gi|228010013|gb|ACP45775.1| Radical SAM domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|228012657|gb|ACP48418.1| Radical SAM domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|228020098|gb|ACP55505.1| Radical SAM domain protein [Sulfolobus islandicus M.16.27]
 gi|238381019|gb|ACR42107.1| Radical SAM domain protein [Sulfolobus islandicus M.16.4]
 gi|284445876|gb|ADB87378.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5]
 gi|323477585|gb|ADX82823.1| Radical SAM domain protein [Sulfolobus islandicus HVE10/4]
          Length = 208

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 103/228 (45%), Gaps = 42/228 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y + EIF ++QGEG   G  + F R + CNL           +C +CDT +    GT+  
Sbjct: 3   YRVIEIFTSVQGEGEVIGTPSNFIRLATCNL-----------RCVWCDTKYSWEIGTE-- 49

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
              +D++   I+       K+ R   +TGGEPLLQ  VPL + L   G +I +ETNGTI+
Sbjct: 50  -MTIDEIIAKID-------KKIRTTTITGGEPLLQNVVPLAKELKSIGHKIVIETNGTIK 101

Query: 124 PPQG----IDWICVSPK---AGCDLKIKGGQELKLVFPQVNVSPENYI----------GF 166
           P +     ID   VSPK   +G  LK     +    +  V V P   I            
Sbjct: 102 PSEELRKIIDVFSVSPKLSNSGHKLKYDFSDDWATYYKFVIVYPNKDIDEVIKFVESQNI 161

Query: 167 DFERFSLQPMDG---PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +  +  LQP DG    ++     +      +  ++R+  Q H+ IG+R
Sbjct: 162 NPRKVILQP-DGNRSDYINAINEIVQIVLDRGLQFRVLPQLHRIIGVR 208


>gi|327543167|gb|EGF29602.1| radical SAM domain protein [Rhodopirellula baltica WH47]
          Length = 272

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 68/132 (51%), Gaps = 19/132 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E F++ QGEG   G  +VF R SGCNL           +C FCDT +   +  +G R 
Sbjct: 47  ISETFVSRQGEGELTGTESVFIRTSGCNL-----------RCWFCDTPYASWK-PEGTRQ 94

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            ++ L  L+ E  +      +Y VLTGGEPL+    V LI  L   G  + +ET GT++P
Sbjct: 95  TIEDLLQLVAESGV------KYVVLTGGEPLIAKGIVSLIDQLRSAGNHVTIETAGTVDP 148

Query: 125 PQGIDWICVSPK 136
               D + +SPK
Sbjct: 149 GARCDLLSLSPK 160


>gi|90408082|ref|ZP_01216253.1| putative organic radical activating enzyme [Psychromonas sp. CNPT3]
 gi|90310839|gb|EAS38953.1| putative organic radical activating enzyme [Psychromonas sp. CNPT3]
          Length = 225

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 102/237 (43%), Gaps = 47/237 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL----------WSGREQDRLSAQCRFCDTD 53
           Y + EIF T+QGEG H G  A+F R  GC++          WS  E D++         +
Sbjct: 5   YKVNEIFQTIQGEGVHTGCAAIFIRLQGCDVGCAWCDTKHTWSANENDKVP-------LN 57

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
            V        ++  D  A+ I  +    E   +  ++TGGEP +    PL   L+  GF+
Sbjct: 58  LVTDLSNSSAQW-ADVSAEHILAEIKNLEYTAKLVIITGGEPCIFDLRPLTALLHAHGFQ 116

Query: 114 IAVETNGTIEPPQGID---WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF--DF 168
             +ET+GT   P  +D   W+ VSPK    + ++  +E+ L   Q     ++ +G   D 
Sbjct: 117 TQIETSGTY--PILVDAKSWVTVSPK----VNMRAKKEVLLSALQRADEIKHPVGTQKDI 170

Query: 169 ERFS---------------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E+                 LQP+        T L +  C     WRLSVQ HK++ I
Sbjct: 171 EQLDALLARLGDTHNKTICLQPISQK--ANATALCMRTCIAR-NWRLSVQLHKYLDI 224


>gi|15676436|ref|NP_273574.1| hypothetical protein NMB0529 [Neisseria meningitidis MC58]
 gi|7225754|gb|AAF40959.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|316985383|gb|EFV64331.1| radical SAM superfamily protein [Neisseria meningitidis H44/76]
 gi|325139736|gb|EGC62270.1| radical SAM domain protein [Neisseria meningitidis CU385]
 gi|325200783|gb|ADY96238.1| radical SAM domain protein [Neisseria meningitidis H44/76]
          Length = 212

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 103/229 (44%), Gaps = 52/229 (22%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV--GIQGTK 61
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++  G+ G  
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLTFGMMG-- 59

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
                   L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG
Sbjct: 60  --------LSDILGR---LKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNG 108

Query: 121 TIEPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER--- 170
               P  ID++  SPKA    K     I+   E+++      V+  + + F  + ER   
Sbjct: 109 LNPAPPQIDYVATSPKACYAAKYENSCIETADEVRI------VADGDVLAFCENMERKIR 162

Query: 171 ---FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
              + L P   DG     +T   I      P     W+LSVQTHK+ GI
Sbjct: 163 AHHYYLSPCEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGI 211


>gi|121634324|ref|YP_974569.1| hypothetical protein NMC0468 [Neisseria meningitidis FAM18]
 gi|120866030|emb|CAM09768.1| hypothetical protein NMC0468 [Neisseria meningitidis FAM18]
 gi|325129656|gb|EGC52471.1| radical SAM domain protein [Neisseria meningitidis OX99.30304]
 gi|325131671|gb|EGC54376.1| radical SAM domain protein [Neisseria meningitidis M6190]
 gi|325137687|gb|EGC60264.1| radical SAM domain protein [Neisseria meningitidis ES14902]
 gi|325141739|gb|EGC64192.1| radical SAM domain protein [Neisseria meningitidis 961-5945]
 gi|325197741|gb|ADY93197.1| radical SAM domain protein [Neisseria meningitidis G2136]
          Length = 212

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGIPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 54  TFGMMSLSDILG---CLKTYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I+   E+++      V+  + + F  + ER     
Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDVLAFCENMERKIRAH 164

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
            + L P   DG     +T   I      P     W+LSVQTHK+ GI
Sbjct: 165 HYYLSPCEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGI 211


>gi|254669979|emb|CBA04660.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
          Length = 212

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 103/229 (44%), Gaps = 52/229 (22%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV--GIQGTK 61
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++  G+ G  
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLTFGMMG-- 59

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
                   L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG
Sbjct: 60  --------LSDILGR---LKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNG 108

Query: 121 TIEPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER--- 170
               P  ID++  SPKA    K     I+   E+++      V+  + + F  + ER   
Sbjct: 109 LNPAPPQIDYVATSPKACYAAKYENSCIETADEVRI------VADGDVLAFCENMERKIR 162

Query: 171 ---FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
              + L P   DG     +T   I      P     W+LSVQTHK+ GI
Sbjct: 163 AHHYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211


>gi|293412124|ref|ZP_06654847.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291468895|gb|EFF11386.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 223

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 102/237 (43%), Gaps = 47/237 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I E+F TLQGEG   G  A+F R  GC          + W   E   +S       T 
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTK 62

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
               +  K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K GF 
Sbjct: 63  ----ESDKWGAASSEDLLAVIGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFS 114

Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDF 168
             +ET+GT E    P    W+ VSPK    L ++GG ++     +     ++ +G   D 
Sbjct: 115 CQIETSGTHEVRCTPN--TWVTVSPK----LNMRGGYKVLSQALERANEIKHPVGRVRDI 168

Query: 169 ERF---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E                 +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--DDATRLCIDTCIAR-NWRLSMQTHKYLNI 222


>gi|268680497|ref|YP_003304928.1| radical SAM protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268618528|gb|ACZ12893.1| Radical SAM domain protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 192

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 93/217 (42%), Gaps = 33/217 (15%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + E+F ++QGEG   G  ++F R  GCNL            C FCD +         
Sbjct: 1   MLKVVEMFYSIQGEGTQVGVPSIFIRLYGCNL-----------SCSFCDEEL------HK 43

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG-T 121
           G Y       ++E             ++TGGEP +      I  L    + ++VETNG  
Sbjct: 44  GAYEELSFDAVLER---IKAYPSMNVIITGGEPSIYDLNGFIDFLQAHMYAVSVETNGYN 100

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--FDFERFS---LQPM 176
                  +WI  SPK    +   G  E+K +     VS ++ +    DF+ +    +QP 
Sbjct: 101 FSNIASANWITYSPKDWNHIAKHGYDEVKFI-----VSKDSDVSKLLDFKSYKPLFIQPQ 155

Query: 177 DGPFLEENTNLA--ISYCFQNPKWRLSVQTHKFIGIR 211
           +        NLA  I++   NP++ LSVQ HKF+G+ 
Sbjct: 156 NNAHTPNQENLAFCIAFVKANPRFILSVQLHKFLGVE 192


>gi|238919074|ref|YP_002932588.1| hypothetical protein NT01EI_1143 [Edwardsiella ictaluri 93-146]
 gi|238868642|gb|ACR68353.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 223

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 101/246 (41%), Gaps = 65/246 (26%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I E+F +LQGEG + G  A+F R  GC +            C +CD+     Q     
Sbjct: 3   YPINEVFQSLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDSQHTWHQ----- 46

Query: 64  RYNVDQLADLIEEQWITGEKE--------------------GRYCVLTGGEPLLQVDVPL 103
               ++ ADL +    T E E                     R  V+TGGEP +   +PL
Sbjct: 47  --RPERQADLAQIVEKTAESEAWASADAAALVALLRQRGYQARRVVITGGEPCMYDLLPL 104

Query: 104 IQALNKRGFEIAVETNGTIEPPQ--GIDWICVSPKAGCDLKIKGGQEL---------KLV 152
             AL + G+   +ET+GT  P +     W+ VSPK G    ++GG E+         ++ 
Sbjct: 105 TTALEQGGYRCQIETSGT-HPVRCSAQTWVTVSPKVG----MRGGMEVLTDALRRANEIK 159

Query: 153 FPQVNVSPENYIGFDFERF--------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQT 204
            P         +     R         +LQP+     EE T L I  C     WRLS+QT
Sbjct: 160 HPVARARDIEALDALLARLDGELPPVVALQPISCK--EEATRLCIETCLAR-NWRLSMQT 216

Query: 205 HKFIGI 210
           HK++ I
Sbjct: 217 HKYLNI 222


>gi|123969432|ref|YP_001010290.1| putative organic radical activating protein [Prochlorococcus
           marinus str. AS9601]
 gi|123199542|gb|ABM71183.1| possible organic radical activating enzyme [Prochlorococcus marinus
           str. AS9601]
          Length = 225

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 99/234 (42%), Gaps = 51/234 (21%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           E F +LQGEG HAG+ A F R +GC +            C +CDT        K    ++
Sbjct: 11  EQFHSLQGEGYHAGKSAFFVRLAGCKV-----------GCSWCDTK-NSWDEKKHPSISI 58

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGFEIAVETNG 120
           +++ D I+   I  +K   +CV+TGGEPL        +A+ K       +  +I +ET+G
Sbjct: 59  EKIIDRIK---IARKKGASFCVITGGEPLQHNLDNFCKAIKKMTMGEEQKPIKIHIETSG 115

Query: 121 TIEPPQGIDWICVSPK----------AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
                   DWI +SPK            C+       E++ +   + +  E        +
Sbjct: 116 VNSISGSYDWITLSPKRHSPPKNYFLKNCNEIKIIINEIEDIEFAIQIKKETLKQHQLSK 175

Query: 171 -----------FSLQPMDGPFLEENTN---LAISYCFQNPKWRLSVQTHKFIGI 210
                      F LQP        N N   LAI +   NP W+LS+QTHK++ I
Sbjct: 176 GEDGLKKEDKIFYLQPA-----WNNANGFSLAIDFVKNNPDWKLSLQTHKYLKI 224


>gi|282600228|ref|ZP_05973516.2| radical SAM domain protein [Providencia rustigianii DSM 4541]
 gi|282566364|gb|EFB71899.1| radical SAM domain protein [Providencia rustigianii DSM 4541]
          Length = 230

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 102/232 (43%), Gaps = 35/232 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60
           Y I EIF TLQGEG   G  AVF R  GC +   W   +Q       +      + ++  
Sbjct: 10  YPINEIFQTLQGEGVFTGVPAVFIRLQGCPVGCSWCDTKQTWDKEPAKESTLGDIALKTQ 69

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
               + +     LI+    +G    ++ V+TGGEP +    PL + L   GF+  +ET+G
Sbjct: 70  DNDLWAMADAEALIQLMQQSG-YTAKHIVITGGEPCIYDLNPLTETLETNGFQCQIETSG 128

Query: 121 TIEPPQGID--WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER-------- 170
           T  P    +  W+ VSPK G    +KGG  LK++   V+ + E       E+        
Sbjct: 129 TY-PILCTEKTWVTVSPKVG----MKGG--LKVLNQAVDRANEIKHPVAREKDIEALDQL 181

Query: 171 -----------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                       +LQP+        T L I  C Q   WRLS+QTHK++ I+
Sbjct: 182 LARRTNNAPLIVALQPISQKV--SATKLCIDTCIQR-NWRLSIQTHKYLNIQ 230


>gi|307150184|ref|YP_003885568.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306980412|gb|ADN12293.1| Radical SAM domain protein [Cyanothece sp. PCC 7822]
          Length = 205

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 96/225 (42%), Gaps = 47/225 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I E F ++QGEG   G  A F R  GC+++           C +CD      +     
Sbjct: 11  YPIVETFHSIQGEGAWTGVSAFFIRLGGCDVY-----------CPWCDQK----ESWNPK 55

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R+    + +L+E   +         V+TGGEPL+   +PL + L   G  + +ET+G+  
Sbjct: 56  RHPHQSVENLLESAKMANPA---IVVITGGEPLMHDLIPLTRELQLLGLRVHLETSGSHP 112

Query: 124 PPQGIDWICVSPKAG-----------CDLKIKGGQELKLVFPQVNVS--PENYIGFDFER 170
                 W+  SPK              +LK+    E  L + Q   +  P   + +    
Sbjct: 113 FSGNFHWVTFSPKPYKRPHESIYEQVNELKVVIANEEDLHWAQRQAAKLPSTVVKY---- 168

Query: 171 FSLQPMDGPFLEENT----NLAISYCFQNPKWRLSVQTHKFIGIR 211
             LQP      E NT     L   +  ++P+WR+S+QTHKF+ +R
Sbjct: 169 --LQP------EWNTPNSGALIFEFVLKHPQWRMSLQTHKFLNVR 205


>gi|254431688|ref|ZP_05045391.1| radical SAM [Cyanobium sp. PCC 7001]
 gi|197626141|gb|EDY38700.1| radical SAM [Cyanobium sp. PCC 7001]
          Length = 209

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 96/218 (44%), Gaps = 31/218 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F +LQGEG H G+ A F R +GC +            C +CDT            +
Sbjct: 11  VVEAFHSLQGEGLHTGQSAFFIRLAGCRV-----------GCSWCDTK----HSWPMAGH 55

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
               L+ L +      +    + V+TGGEPL      L   L   G  + +ET+G +EP 
Sbjct: 56  AEWSLSGLADAALAARQAGAGFVVITGGEPLHHDLTALCALLRSHGLRLHLETSG-VEPL 114

Query: 126 QG-IDWICVSPKAGC---DLKIKGGQELKLV--------FPQVNVSPENYIGFDFERFSL 173
           +G +DWI +SPK      D  I+   ELK+V        F        N  G +     L
Sbjct: 115 RGQVDWIVLSPKRHQPPRDDLIRLCNELKVVVHSHDDLDFALAMARQANASG-NHPALLL 173

Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           QP  G    E   LA+ +   +  WRLS+Q+HK++ IR
Sbjct: 174 QP--GWESTEGQRLALDFVRSHADWRLSLQSHKWLAIR 209


>gi|59713678|ref|YP_206453.1| hypothetical protein VF_A0495 [Vibrio fischeri ES114]
 gi|59481926|gb|AAW87565.1| conserved protein [Vibrio fischeri ES114]
          Length = 226

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 102/238 (42%), Gaps = 47/238 (19%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL----------WSGREQDRLSAQCRFCDT 52
           L+ I E+F T+QGEG   G  ++F R  GC +          W     D+   Q     T
Sbjct: 5   LFKINELFETIQGEGTFTGVPSIFLRLQGCPVGCSWCDTKQTWDVELSDKTDLQTILAKT 64

Query: 53  DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF 112
           +            +  Q+ +++E Q  T     ++ V+TGGEP +     L Q L + G+
Sbjct: 65  E----DTPSWTELSSTQIIEMLENQGYT----AKHMVITGGEPCMYDLTSLTQELEQHGY 116

Query: 113 EIAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF----- 166
              +ET+GT       D W+ VSPK    + +KG    KL    V +S  N I       
Sbjct: 117 RCQIETSGTYPILASDDTWVTVSPK----INMKG----KLPVLPVALSRANEIKHPVGTT 168

Query: 167 -DFERFSLQPMDGPFLEENTNLAISYCFQNPK-------------WRLSVQTHKFIGI 210
            D E+     ++G  L E+  +A+    Q P+             WRLS+QTHK++ I
Sbjct: 169 KDIEQLDAL-LEGVELLEDVTIALQPISQKPRATELCIETCIKRNWRLSIQTHKYLAI 225


>gi|152971643|ref|YP_001336752.1| coenzyme PQQ synthesis protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|262041519|ref|ZP_06014716.1| radical SAM domain protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330012239|ref|ZP_08307334.1| radical SAM domain protein [Klebsiella sp. MS 92-3]
 gi|150956492|gb|ABR78522.1| putative coenzyme PQQ synthesis protein, nitrogenase
           iron-molybdenum domain [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|259041080|gb|EEW42154.1| radical SAM domain protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328533879|gb|EGF60548.1| radical SAM domain protein [Klebsiella sp. MS 92-3]
          Length = 225

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 102/243 (41%), Gaps = 59/243 (24%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------- 53
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 5   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 53

Query: 54  ---FVGIQGTK-----GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
              F  +  TK     G   + D LA +  + W       R+ V+TGGEP +    PL  
Sbjct: 54  VSLFSILAKTKESDKWGPASSEDLLAIIGRQGWT-----ARHVVITGGEPCIHDLTPLTS 108

Query: 106 ALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQEL---------KLVFPQ 155
            L + GF   +ET+GT E     + W+ VSPK    + ++GG ++         ++  P 
Sbjct: 109 LLEQNGFSCQIETSGTHEVRCSPNTWVTVSPK----VNMRGGYDVLSQALQRADEIKHPV 164

Query: 156 VNVSPENYIGFDFERFS--------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
             V     +    E  S        LQP+     E+ T L I  C     WRLS+QTHK+
Sbjct: 165 GRVRDIEALDELLETLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKY 221

Query: 208 IGI 210
           + I
Sbjct: 222 LNI 224


>gi|288933817|ref|YP_003437876.1| radical SAM protein [Klebsiella variicola At-22]
 gi|290511103|ref|ZP_06550472.1| queuosine biosynthesis protein QueE [Klebsiella sp. 1_1_55]
 gi|288888546|gb|ADC56864.1| Radical SAM domain protein [Klebsiella variicola At-22]
 gi|289776096|gb|EFD84095.1| queuosine biosynthesis protein QueE [Klebsiella sp. 1_1_55]
          Length = 223

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 102/243 (41%), Gaps = 59/243 (24%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------- 53
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51

Query: 54  ---FVGIQGTK-----GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
              F  +  TK     G   + D LA +  + W       R+ V+TGGEP +    PL  
Sbjct: 52  VSLFSILAKTKESDKWGPASSEDLLAIIGRQGWT-----ARHVVITGGEPCIHDLTPLTS 106

Query: 106 ALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQEL---------KLVFPQ 155
            L + GF   +ET+GT E     + W+ VSPK    + ++GG ++         ++  P 
Sbjct: 107 LLEQNGFSCQIETSGTHEVRCSHNTWVTVSPK----VNMRGGYDVLSQALQRADEIKHPV 162

Query: 156 VNVSPENYIGFDFERFS--------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
             V     +    E  S        LQP+     E+ T L I  C     WRLS+QTHK+
Sbjct: 163 GRVRDIEALDELLETLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKY 219

Query: 208 IGI 210
           + I
Sbjct: 220 LNI 222


>gi|295097341|emb|CBK86431.1| Organic radical activating enzymes [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 223

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 102/239 (42%), Gaps = 51/239 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------- 53
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51

Query: 54  ---FVGIQGTK-----GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
              F  +  TK     G     D LA +  + W       R+ V+TGGEP +   +PL +
Sbjct: 52  VSLFSILAKTKESDKWGAGSAEDLLAIISRQGWT-----ARHVVITGGEPCIHDLMPLTE 106

Query: 106 ALNKRGFEIAVETNGTIEPP-QGIDWICVSPKA----GCDL---KIKGGQELKLVFPQVN 157
            L K G+   +ET+GT E       W+ VSPK     G D+    ++   E+K    +V 
Sbjct: 107 LLEKNGYSCQIETSGTHEVRCSHSTWVTVSPKVNMRGGYDVLSQALERADEIKHPVGRVR 166

Query: 158 ---VSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                 E       E+    +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 167 DIEALDELLATLTDEKQRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|27366011|ref|NP_761539.1| Queuosine Biosynthesis QueE Radical SAM [Vibrio vulnificus CMCP6]
 gi|37679724|ref|NP_934333.1| organic radical activating enzyme [Vibrio vulnificus YJ016]
 gi|320156525|ref|YP_004188904.1| queuosine Biosynthesis QueE Radical SAM [Vibrio vulnificus
           MO6-24/O]
 gi|27362211|gb|AAO11066.1| Queuosine Biosynthesis QueE Radical SAM [Vibrio vulnificus CMCP6]
 gi|37198469|dbj|BAC94304.1| organic radical activating enzyme [Vibrio vulnificus YJ016]
 gi|319931837|gb|ADV86701.1| queuosine Biosynthesis QueE Radical SAM [Vibrio vulnificus
           MO6-24/O]
          Length = 224

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 37/235 (15%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL----------WSGREQDRLSAQCRFC 50
           M LY + E+F T+QGEG   G  AVF R   C +          W   EQD  S      
Sbjct: 1   MTLYKVNEMFETIQGEGVFTGVPAVFVRLQICPVGCSWCDTKQTWEAAEQDEQS------ 54

Query: 51  DTDFVGIQGTKGGRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
              F  I    G      Q  A  I EQ+       ++ V+TGGEP L     L QA   
Sbjct: 55  ---FAEIIVKTGDSPTWCQADAAAIVEQYQRQGYSAKHIVITGGEPCLYDLTELTQAFEA 111

Query: 110 RGFEIAVETNGTIEPPQGID-WICVSPKAG-------CDLKIKGGQELKL-VFPQVNVSP 160
            G +  +ET+GT E     + W+ VSPK          D  ++   E+K  V  Q ++  
Sbjct: 112 IGCQCQIETSGTYEVKASENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVGTQKDIDQ 171

Query: 161 ENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + +    +       +LQP+     E  T L I  C +   WRLS+QTHK++ I
Sbjct: 172 LDALLLRAQVPATTVIALQPISQK--ERATQLCIDTCIKR-NWRLSIQTHKYLSI 223


>gi|313668991|ref|YP_004049275.1| hypothetical protein NLA_17110 [Neisseria lactamica ST-640]
 gi|313006453|emb|CBN87916.1| conserved hypothetical protein [Neisseria lactamica 020-06]
          Length = 212

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 103/227 (45%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 54  TFGMMSLSDILGR---LKTYTVRNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I+   E+++      V+  + + F  + ER     
Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDVLAFCENMERKIRAR 164

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
            + L P   +G     +T   I      P     W+LSVQTHK+ GI
Sbjct: 165 HYYLSPCEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211


>gi|225010558|ref|ZP_03701029.1| conserved hypothetical protein [Flavobacteria bacterium MS024-3C]
 gi|225005387|gb|EEG43338.1| conserved hypothetical protein [Flavobacteria bacterium MS024-3C]
          Length = 209

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 36/216 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F T+QGEG H G  A F R  GC++            C +CD             +
Sbjct: 18  LMEAFYTIQGEGYHKGTAAYFIRVGGCDV-----------GCHWCDVK---------ESW 57

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
           + ++      E+ I      +  V+TGGEPL     P+   L K G +  +ET+G     
Sbjct: 58  DAERHPPTAIEKIIQDASPYKTIVITGGEPLTWDMGPVTAGLKKVGLQTHIETSGAYTLT 117

Query: 126 QGIDWICVSPKA-----------GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
              DWIC+SPK              +LK+    +  L F Q   +    +G +   + LQ
Sbjct: 118 GEWDWICLSPKKNKLPLAPIYKEAHELKVIVFNKHDLEFAQEQAA---QVGPNCHLY-LQ 173

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P +    ++   + + +   NP W++S+QTHK++ I
Sbjct: 174 P-EWSVKDKVVPMIVDFVMANPAWKVSLQTHKYLNI 208


>gi|238896239|ref|YP_002920975.1| putative coenzyme PQQ synthesis protein [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238548557|dbj|BAH64908.1| putative coenzyme PQQ synthesis protein [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 223

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 102/243 (41%), Gaps = 59/243 (24%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------- 53
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51

Query: 54  ---FVGIQGTK-----GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
              F  +  TK     G   + D LA +  + W       R+ V+TGGEP +    PL  
Sbjct: 52  VSLFSILAKTKESDKWGPASSEDLLAIIGRQGWT-----ARHVVITGGEPCIHDLTPLTS 106

Query: 106 ALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQEL---------KLVFPQ 155
            L + GF   +ET+GT E     + W+ VSPK    + ++GG ++         ++  P 
Sbjct: 107 LLEQNGFSCQIETSGTHEVRCSPNTWVTVSPK----VNMRGGYDVLSQALQRADEIKHPV 162

Query: 156 VNVSPENYIGFDFERFS--------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
             V     +    E  S        LQP+     E+ T L I  C     WRLS+QTHK+
Sbjct: 163 GRVRDIEALDELLETLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKY 219

Query: 208 IGI 210
           + I
Sbjct: 220 LNI 222


>gi|291618623|ref|YP_003521365.1| YgcF [Pantoea ananatis LMG 20103]
 gi|291153653|gb|ADD78237.1| YgcF [Pantoea ananatis LMG 20103]
          Length = 223

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 103/231 (44%), Gaps = 35/231 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I E+F TLQGEG + G  A+F R  GC          + W  ++ DR   +    D  
Sbjct: 3   YPINEMFQTLQGEGYYTGVPAIFIRLQGCPVGCSWCDTKHTWE-KQADR---ETSLGDIL 58

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
              ++    G  +   L   I +Q  T     R+ V+TGGEP +    PL  +L   GF+
Sbjct: 59  VKTVESDAWGNADTATLLSSIAQQGWTA----RHAVITGGEPAIYDLRPLTASLEAAGFQ 114

Query: 114 IAVETNGTIEPP-QGIDWICVSPKA----GCDL---KIKGGQELKL-VFPQVNVSPENYI 164
             +ET+GT E       W+ VSPK     G D+    +    E+K  V  Q +V   + +
Sbjct: 115 CQIETSGTHEIHCSEQTWVTVSPKVNMRGGYDVLAQALSRADEIKHPVARQRDVEALDDL 174

Query: 165 GFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               +       +LQP+     +E T L I  C     WRLS+QTHK++ I
Sbjct: 175 LAGIQDSKARIIALQPISRK--DEATKLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|206580457|ref|YP_002236871.1| radical SAM domain protein [Klebsiella pneumoniae 342]
 gi|206569515|gb|ACI11291.1| radical SAM domain protein [Klebsiella pneumoniae 342]
          Length = 223

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 102/243 (41%), Gaps = 59/243 (24%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------- 53
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51

Query: 54  ---FVGIQGTK-----GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
              F  +  TK     G   + D LA +  + W       R+ V+TGGEP +    PL  
Sbjct: 52  VSLFSILAKTKESDKWGPASSEDLLAIIGRQGWT-----ARHVVITGGEPCIHDLTPLTS 106

Query: 106 ALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQEL---------KLVFPQ 155
            L + GF   +ET+GT E     + W+ VSPK    + ++GG ++         ++  P 
Sbjct: 107 LLEQNGFSCQIETSGTHEVCCSHNTWVTVSPK----VNMRGGYDVLSQALQRADEIKHPV 162

Query: 156 VNVSPENYIGFDFERFS--------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
             V     +    E  S        LQP+     E+ T L I  C     WRLS+QTHK+
Sbjct: 163 GRVRDIEALDELLETLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKY 219

Query: 208 IGI 210
           + I
Sbjct: 220 LNI 222


>gi|293392806|ref|ZP_06637124.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Serratia odorifera DSM 4582]
 gi|291424665|gb|EFE97876.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Serratia odorifera DSM 4582]
          Length = 223

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 108/233 (46%), Gaps = 39/233 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60
           Y I E+F TLQGEG   G  A+F R  GC +   W   +        R  D   + ++  
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCSWCDTKHTWEKEANREVDMQRILVKTE 62

Query: 61  KG---GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +    G    +QL ++++ Q  T     R+ V+TGGEP +   +PL +     G+   +E
Sbjct: 63  ESDAWGSATAEQLLEVVQRQGYT----ARHIVITGGEPCIYDLIPLTKLFELNGYACQIE 118

Query: 118 TNGTIE---PPQGIDWICVSPKAGCDLKIKGGQEL---------KLVFP---QVNVSPEN 162
           T+GT E    P    W+ VSPK    + ++GG ++         ++  P   Q ++   +
Sbjct: 119 TSGTHEILCTPS--TWVTVSPK----VNMRGGMKVLEQALMRADEIKHPVGRQRDIEALD 172

Query: 163 YI--GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +    + E+    +LQP+     +E T L I  C     WRLS+QTHK++ I
Sbjct: 173 ALLDTLNDEKRRIIALQPISQK--DEATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|254804413|ref|YP_003082634.1| hypothetical protein NMO_0411 [Neisseria meningitidis alpha14]
 gi|254667955|emb|CBA04204.1| conserved hypothetical protein [Neisseria meningitidis alpha14]
          Length = 212

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 102/227 (44%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 54  TFGMMSLSDILG---CLKTYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I+   E+++      V+  + + F  + ER     
Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRI------VADGDVVAFCENMERKIRAH 164

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
            + L P   +G     +T   I      P     W+LSVQTHK+ GI
Sbjct: 165 HYYLSPCEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211


>gi|327395003|dbj|BAK12425.1| organic radical Activating YgcF [Pantoea ananatis AJ13355]
          Length = 223

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 103/231 (44%), Gaps = 35/231 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I E+F TLQGEG + G  A+F R  GC          + W  ++ DR   +    D  
Sbjct: 3   YPINEMFQTLQGEGYYTGVPAIFIRLQGCPVGCSWCDTKHTWE-KQADR---ETSLGDIL 58

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
              ++    G  +   L   I +Q  T     R+ V+TGGEP +    PL  +L   GF+
Sbjct: 59  VKTVESDAWGNADTATLLSSIAQQGWTA----RHVVITGGEPAIYDLRPLTASLEAAGFQ 114

Query: 114 IAVETNGTIEPP-QGIDWICVSPKA----GCDL---KIKGGQELKL-VFPQVNVSPENYI 164
             +ET+GT E       W+ VSPK     G D+    +    E+K  V  Q +V   + +
Sbjct: 115 CQIETSGTHEIHCSEQTWVTVSPKVNMRGGYDVLAQALSRADEIKHPVARQRDVEALDDL 174

Query: 165 GFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               +       +LQP+     +E T L I  C     WRLS+QTHK++ I
Sbjct: 175 LAGIQDSKARIIALQPISRK--DEATKLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|188534838|ref|YP_001908635.1| hypothetical protein ETA_27180 [Erwinia tasmaniensis Et1/99]
 gi|188029880|emb|CAO97764.1| Conserved hypothetical protein [Erwinia tasmaniensis Et1/99]
          Length = 223

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 102/227 (44%), Gaps = 27/227 (11%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLS-AQCRFCDTDFVGI 57
           Y I E+F TLQGEG + G  A+F R  GC +   W   +   D+L+  +    D     +
Sbjct: 3   YPINEMFQTLQGEGVYTGVPAIFIRLQGCPVGCSWCDTKHTWDKLANRETSLGDILLKTV 62

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +    G  +   L + I     T     ++ V+TGGEP +   VPL  AL   GF   +E
Sbjct: 63  ETDAWGAADAPALLETIRRHGWTA----KHIVVTGGEPCIHDLVPLTAALQDAGFSCQIE 118

Query: 118 TNGTIEPP-QGIDWICVSPKA----GCDL----KIKGGQELKLVFPQVNVSP-ENYIGFD 167
           T+GT E       W+ VSPK     G D+     ++  +    V  Q +V   +  +G  
Sbjct: 119 TSGTHEVSCTAQTWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQRDVEALDELLGTL 178

Query: 168 FER----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +      +LQP+      + T L I  C     WRLS+QTHK++ I
Sbjct: 179 NDNKARIIALQPISQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222


>gi|212711380|ref|ZP_03319508.1| hypothetical protein PROVALCAL_02452 [Providencia alcalifaciens DSM
           30120]
 gi|212686109|gb|EEB45637.1| hypothetical protein PROVALCAL_02452 [Providencia alcalifaciens DSM
           30120]
          Length = 223

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 100/230 (43%), Gaps = 31/230 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGT 60
           Y I EIF TLQGEG   G  AVF R  GC +   W   +Q       +      + ++  
Sbjct: 3   YPINEIFQTLQGEGVFTGVPAVFIRLQGCPVGCSWCDTKQTWDKEPAKESTLGDIALKTQ 62

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
               + +     LI+     G    ++ V+TGGEP +     L Q L   GF+  +ET+G
Sbjct: 63  DSDFWAMSDAESLIQLMLQNG-YTAKHIVITGGEPCIYDLTALTQTLEANGFQCQIETSG 121

Query: 121 TIEPPQGID--WICVSPKAGCDLKIKGG-QELKLVFPQVN-----VSPENYI-GFD---- 167
           T  P    +  W+ VSPK G    +KGG Q L+    + N     V+ E  I   D    
Sbjct: 122 TY-PILCTENTWVTVSPKVG----MKGGLQVLEQAINRANEIKHPVAREKDIEALDQLLS 176

Query: 168 ------FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                     +LQP+        T L I  C Q   WRLS+QTHK++ I+
Sbjct: 177 LRTQGQLPIVALQPISQK--TSATKLCIDTCIQR-NWRLSIQTHKYLNIQ 223


>gi|309379630|emb|CBX21801.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 212

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 54  TFGMMSLSDILGR---LKTYTVRNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLK 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I    E+++      V+  + + F  + ER     
Sbjct: 111 PAPPQIDYVATSPKAYYAAKYETNCIAEADEVRI------VADGDVLAFCENMERKIRAR 164

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
            + L P   +G     +T   I      P     W+LSVQTHK+ GI
Sbjct: 165 HYYLSPCEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211


>gi|323474845|gb|ADX85451.1| organic radical activating enzyme, NrdG [Sulfolobus islandicus
           REY15A]
          Length = 208

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 76/154 (49%), Gaps = 30/154 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y + EIF ++QGEG   G  + F R + CNL           +C +CDT +    GT+  
Sbjct: 3   YRVIEIFTSVQGEGEVIGTPSNFIRLATCNL-----------RCVWCDTKYSWEIGTE-- 49

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
              +D++   I+       K+ R   +TGGEPLLQ  VPL + L   G +I +ETNGTI+
Sbjct: 50  -MTIDEIIAKID-------KKIRTTTITGGEPLLQNVVPLAKELKSIGHKIVIETNGTIK 101

Query: 124 PPQG----IDWICVSPKAGCDLKIKGGQELKLVF 153
           P +     ID   VSPK         G +LK  F
Sbjct: 102 PSEELRKIIDVFSVSPKLS-----NSGHKLKYDF 130


>gi|238897449|ref|YP_002923126.1| hypothetical protein HDEF_0210 [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465204|gb|ACQ66978.1| conserved hypothetical protein, Radical_SAM domain protein
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 223

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 106/242 (43%), Gaps = 55/242 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           LY I EIF TLQGEG   G  A+F R  GC              C +CDT        K 
Sbjct: 2   LYPINEIFQTLQGEGHFMGTPAIFIRLQGC-----------PVGCSWCDTKHT---WEKK 47

Query: 63  GRYNVDQLADLIEEQ----WI-TGEK-----------EGRYCVLTGGEPLLQVDVPLIQA 106
               VD  + L ++     W  +GE+           +  + V+TGGEP L    PL Q 
Sbjct: 48  NEQQVDLFSILQKKTANDFWSHSGEQNLLAVIRAQGYQASHVVITGGEPCLYDLTPLTQL 107

Query: 107 LNKRGFEIAVETNGT-IEPPQGIDWICVSPKAGCDLKIKGG-----------QELKLVFP 154
           L + G+   +ET+GT +       W+ VSPK    + ++GG            ELK V  
Sbjct: 108 LEQEGYFCQIETSGTHLVHCTPSCWVTVSPK----INMRGGFKIQHQALERADELKHVVA 163

Query: 155 QVN--VSPENYIGFDFER----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           + +   + +  IG   +R     SLQP+     +  T L I  C +   WRLSVQ HK++
Sbjct: 164 RKSDIETLDALIGNLKDRKKRIISLQPVSQK--KSATQLCIDTCIER-NWRLSVQMHKYL 220

Query: 209 GI 210
           GI
Sbjct: 221 GI 222


>gi|311278265|ref|YP_003940496.1| Radical SAM domain-containing protein [Enterobacter cloacae SCF1]
 gi|308747460|gb|ADO47212.1| Radical SAM domain protein [Enterobacter cloacae SCF1]
          Length = 223

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 99/243 (40%), Gaps = 59/243 (24%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------- 53
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDMLEDRE 51

Query: 54  ---FVGIQGTK-----GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
              F  +  TK     G     D L  +  + W       R+ V+TGGEP +    PL  
Sbjct: 52  VSLFSILAKTKESDKWGAATAEDLLTAITRQGWT-----ARHVVITGGEPCIHDLTPLTA 106

Query: 106 ALNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQEL---------KLVFPQ 155
            L + G+   +ET+GT E       W+ VSPK    + ++GG E+         ++  P 
Sbjct: 107 LLEQNGYSCQIETSGTHEVRCSHSTWVTVSPK----VNMRGGFEVLSQALHRADEIKHPV 162

Query: 156 VNVSPENYIGFDFERFS--------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
             V     +    E  S        LQP+     ++ T L I  C     WRLS+QTHK+
Sbjct: 163 GRVRDIEALDELLETLSDDKQRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKY 219

Query: 208 IGI 210
           + I
Sbjct: 220 LNI 222


>gi|257386657|ref|YP_003176430.1| radical SAM protein [Halomicrobium mukohataei DSM 12286]
 gi|257168964|gb|ACV46723.1| Radical SAM domain protein [Halomicrobium mukohataei DSM 12286]
          Length = 258

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 19/132 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F +LQGEG  AG  +VF R SGCNL           +C FCD+     + +     
Sbjct: 24  INELFHSLQGEGKLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPSHAW-L 71

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +D++   IE        +  + V+TGGEPL+  + V L++ L++RG+   VETNGT+  
Sbjct: 72  TIDEIVAEIEGY------DADHVVVTGGEPLIHEETVDLLERLDERGYHTTVETNGTVAV 125

Query: 125 PQGIDWICVSPK 136
              ID   VSPK
Sbjct: 126 DAPIDLASVSPK 137


>gi|317968277|ref|ZP_07969667.1| organic radical activating protein [Synechococcus sp. CB0205]
          Length = 209

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 97/219 (44%), Gaps = 36/219 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F +LQGEG HAGR A F R  GC +            C +CDT            +
Sbjct: 14  VVETFHSLQGEGLHAGRSAFFIRLGGCRV-----------GCSWCDTK----HSWPAEVH 58

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTIEP 124
               L +L             + VLTGGEPL      L  A+ +     I +ET+G ++P
Sbjct: 59  PQQSLEELALACAEAASAGAAFVVLTGGEPLHHNLDALSAAIRQHCSLPIHLETSG-VDP 117

Query: 125 PQGI-DWICVSPKAG----------CD-LKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
             G  DWI +SPK            CD LK+   +   L+F +V+ S           + 
Sbjct: 118 LTGSPDWISLSPKRHQPPRAELLQRCDELKVVVHEAADLLFAEVSASQAPQA-----TWL 172

Query: 173 LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           LQP  G    E   LA+ +    P+WRLS+Q+HK++G+R
Sbjct: 173 LQP--GWDCREGQALALEFVQSQPRWRLSLQSHKWLGVR 209


>gi|227356608|ref|ZP_03840995.1| radical SAM domain protein [Proteus mirabilis ATCC 29906]
 gi|227163364|gb|EEI48291.1| radical SAM domain protein [Proteus mirabilis ATCC 29906]
          Length = 250

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 101/235 (42%), Gaps = 43/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I E+F TLQGEG   G  A+F R  GC          + W   E  ++       D  
Sbjct: 30  YPINEVFQTLQGEGVFTGVPALFVRLQGCPVGCSWCDTKHTWEKEESKKVP----LGDIP 85

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
               +    G   V+ +  L  +Q        ++ V+TGGEP L    PL + L K GF+
Sbjct: 86  IKTQESDTWGIATVEDILSLFRQQ----RYSAKHVVITGGEPCLYDLRPLTEGLEKAGFD 141

Query: 114 IAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVN--------VSPENYI 164
             +ET+GT +       W+ +SPK G    ++GG  L ++   +N        V+ E  I
Sbjct: 142 CQIETSGTHDILCSEATWVTLSPKVG----MRGG--LNVLSSAINRANEIKHPVAREKDI 195

Query: 165 GF--DFERF-SLQPMDGPFL------EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               D  R  + QPM    L      E  T L I  C +   WR S+QTHK++ I
Sbjct: 196 EALDDLLRLRTQQPMAIVALQPISCKESATALCIKTCIER-NWRFSMQTHKYLNI 249


>gi|33241303|ref|NP_876245.1| putative organic radical activating protein [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|33238833|gb|AAQ00898.1| Radical activating enzyme [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 225

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 101/236 (42%), Gaps = 49/236 (20%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E F +LQGEG H G+ A F R  GC +            C +CDT     +      +
Sbjct: 7   IVERFHSLQGEGLHFGKSAFFIRLGGCKV-----------GCPWCDTK----ESWSIATH 51

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-------NKRGFEIAVET 118
               + +L +E  I   +     V+TGGEPL      L + +       ++    I +ET
Sbjct: 52  QEATVEELSKEAAIAQSQGAAILVITGGEPLHHNLNALCKTIQDFTSHNSRETMPIHLET 111

Query: 119 NGTIEPPQGIDWICVSPKA----------GCD-LKIKGGQELKLVFPQ------------ 155
           +G  E    I+WI +SPK            CD +K+   Q+  L+F +            
Sbjct: 112 SGVDEITGLINWITLSPKRHALPKKSLLRACDEIKVVIHQKEDLLFAEEMANQSIKERQI 171

Query: 156 -VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               S EN+         LQP  G   +E T L I Y   +P+WRLS+QTHK++G+
Sbjct: 172 SKKTSDENH-KISQPHLFLQP--GWNSKEGTQLTIEYIKSHPQWRLSLQTHKWLGV 224


>gi|290476591|ref|YP_003469496.1| putative coenzyme PQQ synthesis protein with nitrogenase
           iron-molybdenum domain [Xenorhabdus bovienii SS-2004]
 gi|289175929|emb|CBJ82732.1| putative coenzyme PQQ synthesis protein with nitrogenase
           iron-molybdenum domain [Xenorhabdus bovienii SS-2004]
          Length = 223

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 105/247 (42%), Gaps = 65/247 (26%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD--------- 53
           +Y I EIF TLQGEG   G  +VF R  GC +            C +CDT          
Sbjct: 2   IYPINEIFQTLQGEGVFTGVPSVFIRLQGCPV-----------GCSWCDTKHTWEKEADK 50

Query: 54  -------FVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
                   V  Q +   G     Q+ +L   Q  T     R+ V+TGGEP L    PL +
Sbjct: 51  QQPMENILVKSQDSDTWGAATARQIINLFIRQGYT----ARHIVVTGGEPCLYNLRPLTE 106

Query: 106 ALNKRGFEIAVETNGT--IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-VNVSPEN 162
            L   G++  +ET+GT  I+  +   W+ VSPK    +K++GG +   V P+ +N + E 
Sbjct: 107 TLESEGYQCQIETSGTHAIQCSEKT-WVTVSPK----VKMRGGYQ---VLPEAMNRANEI 158

Query: 163 YIGFDFER-------------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQ 203
                 ER                    +LQP+     EE T L I  C     WR S+Q
Sbjct: 159 KHPVGRERDIEALDELLTMLDEKADPVIALQPISQK--EEATRLCIETCIAR-NWRFSMQ 215

Query: 204 THKFIGI 210
           THK++ I
Sbjct: 216 THKYLNI 222


>gi|197286098|ref|YP_002151970.1| hypothetical protein PMI2252 [Proteus mirabilis HI4320]
 gi|194683585|emb|CAR44467.1| conserved hypothetical protein [Proteus mirabilis HI4320]
          Length = 223

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 101/235 (42%), Gaps = 43/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I E+F TLQGEG   G  A+F R  GC          + W   E  ++       D  
Sbjct: 3   YPINEVFQTLQGEGVFTGVPALFVRLQGCPVGCSWCDTKHTWEKEESKKVP----LGDIP 58

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
               +    G   V+ +  L  +Q        ++ V+TGGEP L    PL + L K GF+
Sbjct: 59  IKTQESDTWGIATVEDILSLFRQQ----RYSAKHVVITGGEPCLYDLRPLTEGLEKAGFD 114

Query: 114 IAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVN--------VSPENYI 164
             +ET+GT +       W+ +SPK G    ++GG  L ++   +N        V+ E  I
Sbjct: 115 CQIETSGTHDILCSEATWVTLSPKVG----MRGG--LSVLSSAINRANEIKHPVAREKDI 168

Query: 165 GF--DFERF-SLQPMDGPFL------EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               D  R  + QPM    L      E  T L I  C +   WR S+QTHK++ I
Sbjct: 169 EALDDLLRLRTQQPMAIVALQPISCKESATALCIKTCIER-NWRFSMQTHKYLNI 222


>gi|163786121|ref|ZP_02180569.1| hypothetical protein FBALC1_13087 [Flavobacteriales bacterium
           ALC-1]
 gi|159877981|gb|EDP72037.1| hypothetical protein FBALC1_13087 [Flavobacteriales bacterium
           ALC-1]
          Length = 210

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 90/221 (40%), Gaps = 39/221 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           L  + E F T+QGEG H G  A F R  GC++            C +CD     +     
Sbjct: 15  LLPLMEEFYTIQGEGYHKGTAAYFVRIGGCDV-----------GCHWCDVKESWLPELHP 63

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                  + + I        K     V+TGGEPL     PL + L  +G +  +ET+G  
Sbjct: 64  ATETTKIVENAI--------KYSDIIVVTGGEPLTWDMGPLTEQLKAKGVQTHIETSGAY 115

Query: 123 EPPQGIDWICVSPKA-----------GCDLK--IKGGQELKLVFPQVNVSPENYIGFDFE 169
           +     DWIC+SPK              +LK  I    + K    Q     ++ I +   
Sbjct: 116 KLTGQWDWICLSPKKVKLPTEEIYDEAHELKCIIYNKDDFKFAEEQAAKINKDCILYLQP 175

Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +S +    P +       + Y   NPKW++S+QTHK++ I
Sbjct: 176 EWSKRDKMMPQI-------VDYVMANPKWKVSLQTHKYLNI 209


>gi|91793369|ref|YP_563020.1| radical activating enzyme [Shewanella denitrificans OS217]
 gi|91715371|gb|ABE55297.1| radical activating enzyme [Shewanella denitrificans OS217]
          Length = 222

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 102/228 (44%), Gaps = 30/228 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQD-RLSAQCRFCDTDFVGIQG 59
           Y + E+F T+QGEG   G  A+F R  GC +   W   +Q   + A  +      + + G
Sbjct: 3   YPVNEVFETIQGEGCFTGVPALFVRLQGCPVGCAWCDTKQTWDVLADNKVTPEQVITVDG 62

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           T G   N D  A LI      G    ++ VLTGGEP L     +       G+ + +ET+
Sbjct: 63  TIGRWANHDG-ASLITAFKAKGFT-AKHIVLTGGEPCLYDLTDITHDFIAAGYSVQIETS 120

Query: 120 GTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENY--------- 163
           GT E     D W+ VSPK    + +KGG + L+    + N     ++ +N+         
Sbjct: 121 GTFEVKCHQDVWVTVSPK----INMKGGYKVLEQALIRANEIKHPIATQNHIDELDELLA 176

Query: 164 -IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            I    +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 177 DIDLSGKTICLQPISQKV--RATELAMKTCIAR-NWRLSIQTHKYLNI 221


>gi|294141101|ref|YP_003557079.1| radical activating enzyme [Shewanella violacea DSS12]
 gi|293327570|dbj|BAJ02301.1| radical activating enzyme [Shewanella violacea DSS12]
          Length = 222

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 102/230 (44%), Gaps = 34/230 (14%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y + E+F T+QGEG   G  A+F R  GC          + W   E++R++ +       
Sbjct: 3   YPVNEVFETIQGEGFFTGVPAIFVRLQGCPVGCSWCDTKHTWDVLEKNRVAPEL------ 56

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
            + + G + GR++ +  A+ +   +I       + V+TGGEP +     L   LN +G+ 
Sbjct: 57  VIQVDG-EIGRWS-ELTAEALINSFIRKGFSANHVVITGGEPCIHDLTELTSQLNSQGYA 114

Query: 114 IAVETNGTIEPP-QGIDWICVSP----KAGCDLKIKGGQELKLVFPQVNVSPE------- 161
             +ET+GT E       W+ VSP    KAG  +  +  +    +   V  S         
Sbjct: 115 TQIETSGTFEVICSDKTWVTVSPKVNMKAGMAVLTQALERADEIKHPVATSKHIDDLDEL 174

Query: 162 -NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              I  D +   LQP+        T LA+  C +   WRLS+QTHK++ I
Sbjct: 175 LEGIELDGKTICLQPISQK--PRATELAMKTCIER-NWRLSIQTHKYLNI 221


>gi|296122194|ref|YP_003629972.1| radical SAM protein [Planctomyces limnophilus DSM 3776]
 gi|296014534|gb|ADG67773.1| Radical SAM domain protein [Planctomyces limnophilus DSM 3776]
          Length = 260

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 67/132 (50%), Gaps = 19/132 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E FL++QGEG   G  + F R +GCNL           +C FCDT +      +G   
Sbjct: 23  IAETFLSVQGEGALTGVRSFFIRTTGCNL-----------RCWFCDTPYTSWTA-EGNWQ 70

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEP 124
            +D+   L+ +   +G     + +LTGGEPLLQ   V L  AL   G  I VET GT++ 
Sbjct: 71  TIDE---LLAQATASG---AEHVILTGGEPLLQPAIVELSHALKAAGLHITVETAGTVDR 124

Query: 125 PQGIDWICVSPK 136
           P   D + +SPK
Sbjct: 125 PVMADLMSISPK 136


>gi|33151750|ref|NP_873103.1| hypothetical protein HD0556 [Haemophilus ducreyi 35000HP]
 gi|33147971|gb|AAP95492.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 209

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 98/217 (45%), Gaps = 35/217 (16%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           EIF +LQGEG + G   +F R   CNL            C +CDT++   Q     ++ +
Sbjct: 15  EIFESLQGEGFNTGLPCIFIRLGKCNL-----------ACPWCDTNYNEYQ-----KWTL 58

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQ 126
           + +   ++          +  ++TGGEP L  ++  L++ L   G+ +A+ETNG    P 
Sbjct: 59  EMILAKVKSY------TAKNIIITGGEPTLYANLTILLEQLKNAGYWLAIETNGLKAVPS 112

Query: 127 GIDWICVSPKAGCDLK-----IKGGQELKLV----FPQVNVSPENYIGFDFERFSLQPMD 177
            ID+I  SPK     K     +    E+++V      +     E  I       S   ++
Sbjct: 113 QIDYIATSPKKMYQEKYQREYLTQADEVRIVVDDDVTEFCALIEQKIQAHHYYLSPCEIE 172

Query: 178 GP--FLEENTNLA-ISYCFQNPKWRLSVQTHKFIGIR 211
           G    LE  T L  ++     PKW+LS+QTHK IGI 
Sbjct: 173 GKMNLLETITQLGQLNQRVNKPKWQLSIQTHKIIGIE 209


>gi|269102881|ref|ZP_06155578.1| queuosine Biosynthesis QueE Radical SAM [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162779|gb|EEZ41275.1| queuosine Biosynthesis QueE Radical SAM [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 222

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 105/234 (44%), Gaps = 39/234 (16%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59
           +Y + E+F T+QGEG   G  A+F R   C +   W   +Q   +    F   D +  + 
Sbjct: 1   MYKLNEVFETIQGEGVFTGVPAIFVRLQICPVGCSWCDTKQTWSAEPQDFTTLDRIMAKT 60

Query: 60  TKGGRY---NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
                +   +   +  L+++Q  T     ++ V+TGGEP +    PL QAL   G++  +
Sbjct: 61  GDSPLWTEIDAQGIVSLLQDQGYTA----KHVVITGGEPCIYDLRPLTQALEASGYQCQI 116

Query: 117 ETNGTIE-PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF------DFE 169
           ET+GT E       W+ VSPK    + +KG    KL   +  +S  N I        D +
Sbjct: 117 ETSGTSEVQATEATWVTVSPK----INMKG----KLPVLEKALSRANEIKHPVGTQKDLD 168

Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNPK-------------WRLSVQTHKFIGI 210
           +   + ++G  L  +  +A+    Q P+             WRLS+QTHK++ I
Sbjct: 169 QLD-ELLNGVALRSDVTIALQPISQKPRATELCIETCIKRNWRLSIQTHKYLAI 221


>gi|262404009|ref|ZP_06080564.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. RC586]
 gi|262349041|gb|EEY98179.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. RC586]
          Length = 222

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 99/229 (43%), Gaps = 29/229 (12%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGI 57
           +Y I E+F T+QGEG   G  AVF R  GC +   W   +Q  D L ++     TDF  I
Sbjct: 1   MYRINEMFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWDMLESE----QTDFSHI 56

Query: 58  QGTKGGRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
               G      Q  A  + +++ T E + ++ V+TGGEP +     L Q     G +  +
Sbjct: 57  LLKAGDSPTWCQASAQDVVQRYQTQEYQAKHIVITGGEPCIYDLTELTQVFEAIGCQCQI 116

Query: 117 ETNGTIEPPQGID-WICVSPKAGC-------DLKIKGGQELKLVFPQVNVSPENYIGFDF 168
           ET+GT E     + W+ VSPK          D  ++   E+K      N   EN      
Sbjct: 117 ETSGTYEILATPNTWVTVSPKVAMKGKLPILDSSLQRANEIKHPVATEN-DIENLDALLL 175

Query: 169 ER-------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                     +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 176 RAKVSSATVIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 221


>gi|330445748|ref|ZP_08309400.1| conserved protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489939|dbj|GAA03897.1| conserved protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 222

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 102/233 (43%), Gaps = 37/233 (15%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL----------WSGREQDRLSAQCRFCDT 52
           +Y I E+F T+QGEG   G  A+F R   C +          W+   QD  S +     T
Sbjct: 1   MYKINEVFETIQGEGVFTGVPAIFVRLQVCPVGCSWCDTKQTWTAEPQDLASLEQIMAKT 60

Query: 53  DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF 112
           +   +  T+     V QL  LI++++       ++ V+TGGEP +    PL +AL   GF
Sbjct: 61  EDSPL-WTQLDANGVVQL--LIDQKYT-----AKHVVITGGEPCIYDLRPLTEALEAAGF 112

Query: 113 EIAVETNGTIE-PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENYIGFDFER 170
              +ET+GT E       W+ VSPK     K+     L     + N +        D E+
Sbjct: 113 NCQIETSGTSEIQASNNTWVTVSPKINMKAKLPV---LASALERANEIKHPVGTSKDIEQ 169

Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPK-------------WRLSVQTHKFIGI 210
                ++G  L+ +  +A+    Q P+             WRLS+QTHK++ I
Sbjct: 170 LDAL-LEGKNLKSDITIALQPISQKPRATELCIETCIARNWRLSIQTHKYLAI 221


>gi|292487226|ref|YP_003530098.1| hypothetical protein EAMY_0740 [Erwinia amylovora CFBP1430]
 gi|291552645|emb|CBA19690.1| Uncharacterized protein ygcF [Erwinia amylovora CFBP1430]
          Length = 255

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 100/227 (44%), Gaps = 27/227 (11%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLS-AQCRFCDTDFVGI 57
           Y I E+F TLQGEG + G  A+F R  GC +   W   +   D+L+  +    D     +
Sbjct: 35  YPINEMFQTLQGEGVYTGVPAIFIRLQGCPVGCSWCDTKHTWDKLANRETSLGDILLKTV 94

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +    G  +   L + I     T     ++ V+TGGEP +    PL  AL   GF   +E
Sbjct: 95  ESDAWGAADAPALLETIRRHGWT----AKHIVITGGEPCIHDLTPLTAALQGSGFSCQIE 150

Query: 118 TNGTIEPPQGID-WICVSPKA----GCDL----KIKGGQELKLVFPQVNVSPENYIGFDF 168
           T+GT E     + W+ VSPK     G D+     ++  +    V  Q +V   + +    
Sbjct: 151 TSGTHEVHCTAETWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQRDVDALDDLLATL 210

Query: 169 ER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                   +LQP+      + T L I  C     WRLS+QTHK++ I
Sbjct: 211 SDNKARIIALQPVSQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 254


>gi|292900399|ref|YP_003539768.1| hypothetical protein EAM_2701 [Erwinia amylovora ATCC 49946]
 gi|291200247|emb|CBJ47375.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
          Length = 223

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 101/231 (43%), Gaps = 35/231 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLS-AQCRFCDTDFVGI 57
           Y I E+F TLQGEG + G  A+F R  GC +   W   +   D+L+  +    D     +
Sbjct: 3   YPINEMFQTLQGEGVYTGVPAIFIRLQGCPVGCSWCDTKHTWDKLANRETSLGDILLKTV 62

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +    G  +   L + I     T     ++ V+TGGEP +    PL  AL   GF   +E
Sbjct: 63  ESDAWGAADAPALLETIRRHGWT----AKHIVITGGEPCIHDLTPLTAALQGSGFSCQIE 118

Query: 118 TNGTIEPPQGID-WICVSPKAGCDLKIKGGQEL------------KLVFPQVNVSPENYI 164
           T+GT E     + W+ VSPK    + ++GG ++              V  Q +V   + +
Sbjct: 119 TSGTHEVHCTAETWVTVSPK----VNMRGGYDVLNQALVRADEVKHPVARQRDVDALDDL 174

Query: 165 GFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                       +LQP+      + T L I  C     WRLS+QTHK++ I
Sbjct: 175 LATLSDNKARIIALQPVSQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222


>gi|127512989|ref|YP_001094186.1| radical SAM domain-containing protein [Shewanella loihica PV-4]
 gi|126638284|gb|ABO23927.1| Radical SAM domain protein [Shewanella loihica PV-4]
          Length = 222

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 107/236 (45%), Gaps = 46/236 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y + E+F T+QGEG + G  A+F R  GC          + W    ++R+S++       
Sbjct: 3   YPVNEVFETIQGEGVYTGVPAIFVRLQGCPVGCSWCDTKHTWETLAENRVSSE------Q 56

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
            + + G  G    +D   +L+    + G    ++ V+TGGEP +   + L QA    G +
Sbjct: 57  VIQVDGAIGRWAELDA-RELLMHFKVQG-FSAKHVVITGGEPCIYDLIALTQAFADAGMQ 114

Query: 114 IAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQEL---------KLVFPQVNVS-- 159
             +ET+GT +    P+   W+ VSPK    + +KGG ++         ++  P    S  
Sbjct: 115 CQIETSGTFDVLVDPRA--WVTVSPK----INMKGGYKVLEQALERADEIKHPVAKASHI 168

Query: 160 ---PENYIGFDF--ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               E   G D   +   LQP+        T LA+  C +   WRLS+QTHK++ I
Sbjct: 169 EELDELLKGIDTLGKTICLQPISQK--PRATELAMKVCIER-NWRLSIQTHKYLNI 221


>gi|300712358|ref|YP_003738172.1| Radical SAM domain protein [Halalkalicoccus jeotgali B3]
 gi|299126041|gb|ADJ16380.1| Radical SAM domain protein [Halalkalicoccus jeotgali B3]
          Length = 251

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 67/132 (50%), Gaps = 19/132 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F +LQGEG  AG  + F R SGCNL           +C FCD+     +   G   
Sbjct: 19  INELFHSLQGEGKLAGVPSTFVRTSGCNL-----------RCWFCDSYHTSWE-PAGDWM 66

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEP 124
            ++ + + IE+          + VLTGGEPLL      L++ L +RG+   VETNGTI P
Sbjct: 67  GMEAILEGIEDHG------ADHVVLTGGEPLLHDASSELLERLAERGYHTTVETNGTIVP 120

Query: 125 PQGIDWICVSPK 136
              +D   VSPK
Sbjct: 121 DAPVDLASVSPK 132


>gi|330830002|ref|YP_004392954.1| Radical activating enzyme [Aeromonas veronii B565]
 gi|328805138|gb|AEB50337.1| Radical activating enzyme [Aeromonas veronii B565]
          Length = 230

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 99/245 (40%), Gaps = 63/245 (25%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54
           Y I EIF T+QGEG   G  A+F R  GC +            C +CDT           
Sbjct: 10  YPINEIFQTIQGEGIFTGLPAIFVRLQGCPV-----------GCPWCDTRHTWVVDPARE 58

Query: 55  VGIQGTKGGRYNVDQLADLIEEQWIT--GE--KEGRYCVLTGGEPLLQVDVPLIQALNKR 110
           VG           D  + L   Q I   GE   + R+ V+TGGEP L     L  AL   
Sbjct: 59  VGKAAVLDRSNESDCWSQLSTAQIIKSFGELGYQARHVVITGGEPCLYDLHELSSALLAA 118

Query: 111 GFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIKGG----------------------- 146
           G+++ +ET+GT E       W+ VSPK G    +KGG                       
Sbjct: 119 GYQVQIETSGTSEIKTHEQTWVTVSPKIG----MKGGLPVLVSALERANEIKHPVATEHH 174

Query: 147 -QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205
            +EL  +     + P+  I       +LQP+        T LA+  C     WRLS+QTH
Sbjct: 175 IEELDTLLATATLRPDVVI-------ALQPISQK--PRATQLAMDTCIAR-NWRLSIQTH 224

Query: 206 KFIGI 210
           K++ I
Sbjct: 225 KYLDI 229


>gi|83593294|ref|YP_427046.1| radical SAM family protein [Rhodospirillum rubrum ATCC 11170]
 gi|83576208|gb|ABC22759.1| Radical SAM [Rhodospirillum rubrum ATCC 11170]
          Length = 235

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 24/120 (20%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I+E+F TLQGEG  +G+ +VF R +GCNL           +C +CDTDF     +   + 
Sbjct: 20  IQEVFYTLQGEGPFSGQPSVFVRTAGCNL-----------RCAWCDTDF----ESSAWKP 64

Query: 66  NVDQLADLIEEQWITGEKEGRYC---VLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
            + +L  +I+       +  R C   VLTGGEPL Q   PL++AL  RG  + +ETNGT+
Sbjct: 65  PLPELLAVIDS------RRPRVCDLVVLTGGEPLRQEVGPLVRALLARGLRVQIETNGTL 118


>gi|197337552|ref|YP_002158091.1| queuosine biosynthesis protein QueE [Vibrio fischeri MJ11]
 gi|197314804|gb|ACH64253.1| queuosine biosynthesis protein QueE [Vibrio fischeri MJ11]
          Length = 226

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 102/238 (42%), Gaps = 47/238 (19%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL----------WSGREQDRLSAQCRFCDT 52
           L+ I E+F T+QGEG   G  ++F R  GC +          W     D+   Q     T
Sbjct: 5   LFKINELFETIQGEGTFTGVPSIFLRLQGCPVGCSWCDTKQTWDVELSDKTDLQTILAKT 64

Query: 53  DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF 112
           +            +  Q+ +++E Q  T     ++ V+TGGEP +     L Q L + G+
Sbjct: 65  E----DTPSWTELSSTQIIEMLENQGYT----AKHMVITGGEPCMYDLTSLTQELEQHGY 116

Query: 113 EIAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF----- 166
              +ET+GT       + W+ VSPK    + +KG    KL    V +S  N I       
Sbjct: 117 RCQIETSGTYPILASENTWVTVSPK----INMKG----KLPVLPVALSRANEIKHPVGTT 168

Query: 167 -DFERFSLQPMDGPFLEENTNLAISYCFQNPK-------------WRLSVQTHKFIGI 210
            D E+     ++G  L E+  +A+    Q P+             WRLS+QTHK++ I
Sbjct: 169 KDIEQLDAL-LEGVELLEDVTIALQPISQKPRATELCIETCIKRNWRLSIQTHKYLAI 225


>gi|325291195|ref|YP_004267376.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324966596|gb|ADY57375.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 203

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 98/223 (43%), Gaps = 40/223 (17%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           K Y + EIF ++QGEG   G  A F R   CNL           +C +CD+   G    K
Sbjct: 8   KEYPVHEIFDSIQGEGYWTGAAASFVRLQQCNL-----------RCAWCDSK--GTWEGK 54

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
             +   D++   +  + +         +LTGGEPLL     L+++L   G ++ +ETNGT
Sbjct: 55  PEKMTADEILAAVHSERV---------ILTGGEPLLHDLTALLESLKAAGKKVHIETNGT 105

Query: 122 IEP-----PQGIDWICVSPKAGCDLKIK-----GGQELKLVFPQVNVSPENYIGFDFE-- 169
            +P     PQ   WI VSPK      ++        E K V  + + S +     +F   
Sbjct: 106 -QPWKESYPQEA-WITVSPKKESGYLVQPSIKSKANEYKFVVDE-DFSADILAQLEFNSC 162

Query: 170 -RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               L P +     E    A+S   Q P  RL++Q HK IG+R
Sbjct: 163 PNIFLSPEN--VRSEMIKKALSIVAQYPFCRLTLQLHKLIGVR 203


>gi|284009093|emb|CBA76077.1| conserved hypothetical protein [Arsenophonus nasoniae]
          Length = 224

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 98/239 (41%), Gaps = 50/239 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I +IF T+QGEG   G  A+F R  GC              C +CDT     +  +  
Sbjct: 3   YPINQIFQTIQGEGYFTGVAAIFVRLQGC-----------PVGCSWCDTKHTWAKNKQQQ 51

Query: 64  RYNVDQLADLIE-EQWITGEKE------------GRYCVLTGGEPLLQVDVPLIQALNKR 110
           R     LA   + E+W T   E             R+ V+TGGEP L     L   L K+
Sbjct: 52  RPLSIILAKKSDNEEWATCSSEQIIDLFEQNHYTARHIVITGGEPCLYDLTELTTNLEKK 111

Query: 111 GFEIAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQEL---------KLVFP---QVN 157
           G++  +ET+GT         W+ VSPK      ++GG ++         ++  P   Q +
Sbjct: 112 GYQCQIETSGTHNIYCSEKTWVTVSPKVA----MRGGYKILPAALNRANEIKHPVGRQRD 167

Query: 158 VSPENYI------GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    Y+              LQP+        TNL I  C +   WRLSVQ HK++ I
Sbjct: 168 IDALEYLINQLAPNHPAPHICLQPISQN--ANATNLCIETCIKR-NWRLSVQMHKYLDI 223


>gi|294635382|ref|ZP_06713876.1| radical SAM domain protein [Edwardsiella tarda ATCC 23685]
 gi|291091269|gb|EFE23830.1| radical SAM domain protein [Edwardsiella tarda ATCC 23685]
          Length = 249

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 105/240 (43%), Gaps = 53/240 (22%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  A+F R  GC +            C +CD+     Q     
Sbjct: 29  YPINEIFHSLQGEGFYTGLPAIFIRLQGCPV-----------GCSWCDSKHTWQQDAVR- 76

Query: 64  RYNVDQLADLIEEQ--WITGE------------KEGRYCVLTGGEPLLQVDVPLIQALNK 109
           +  ++Q+ +   E   W + +               R+ V+TGGEP L   +PL  AL +
Sbjct: 77  QVALEQVVEKAAESDAWASADVATLCALLQQRGYAARHVVITGGEPCLHDLLPLTLALEQ 136

Query: 110 RGFEIAVETNGTIEPPQGID--WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPE 161
            G++  +ET+GT  P +  +  W+ VSPK    + ++GG   L     + N     V+ E
Sbjct: 137 AGYQCQIETSGT-HPVRCSEQTWVTVSPK----VAMRGGMAVLTSALRRANEIKHPVARE 191

Query: 162 NYIGFDF-----------ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             I               +  +LQP+     E  T L I  C     WRLS+QTHK++ I
Sbjct: 192 RDIAALDALLATLGEALPQVVALQPISCK--EGATRLCIDTCLAR-NWRLSMQTHKYLHI 248


>gi|194097763|ref|YP_002000804.1| hypothetical protein NGK_0179 [Neisseria gonorrhoeae NCCP11945]
 gi|239998266|ref|ZP_04718190.1| hypothetical protein Ngon3_02112 [Neisseria gonorrhoeae 35/02]
 gi|193933053|gb|ACF28877.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|317163547|gb|ADV07088.1| hypothetical protein NGTW08_0112 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 212

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 101/227 (44%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 54  TFGMMSLSDILG---CLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLK 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I    E+++      V+  + + F  + ER     
Sbjct: 111 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRI------VADGDVLAFCENMERKIRAR 164

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
            + L P   +G     +T   I      P     W+LSVQTHK+ GI
Sbjct: 165 HYYLSPCEQNGVMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211


>gi|21672674|ref|NP_660741.1| hypothetical protein BUsg401 [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25091592|sp|Q8K9D9|Y401_BUCAP RecName: Full=Uncharacterized protein BUsg_401
 gi|21623312|gb|AAM67952.1| hypothetical 25.0 kDa protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 219

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 101/238 (42%), Gaps = 51/238 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF T+QGEG + G  ++F R  GC              C++CDT +         
Sbjct: 3   YPINEIFQTIQGEGYYTGTPSIFIRLQGC-----------PVHCKWCDTKYTWKCN---- 47

Query: 64  RYNVDQLADLIEEQWITGEKEGR----------------------YCVLTGGEPLLQVDV 101
             N DQ++    E+ I  +K  R                      + V+TGGEP L   +
Sbjct: 48  --NEDQIS---YEKIIMKKKSNRKWSYMNVKEIILIIKIKKWTAKHIVITGGEPCLYNLL 102

Query: 102 PLIQALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCD-LKIKGGQELKLVFPQVNVS 159
            + + L K  ++  +ET+GT      ++ WI +SPK     LK    +  ++ +P +   
Sbjct: 103 EITKELEKEDYKCQIETSGTELIKCSLNTWITLSPKINKKTLKTSILRSNEIKYPVLKKE 162

Query: 160 PENYIGFDFERFSLQPMDGPFL------EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
              Y+    ++   +  +  FL      EE  N+ I  C     WRLSVQ HK++ IR
Sbjct: 163 DLFYLNSILKKIKNKKHNLIFLQPISQNEEALNICIKTCIIK-NWRLSVQIHKYLKIR 219


>gi|268594121|ref|ZP_06128288.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268547510|gb|EEZ42928.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
          Length = 240

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 101/227 (44%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 41  YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 82

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 83  -FGMMSLSDILG---CLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLK 138

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER----- 170
             P  ID++  SPKA    K     I    E+++      V+  + + F  + ER     
Sbjct: 139 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRI------VADGDVLAFCENMERKIRAR 192

Query: 171 -FSLQP--MDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
            + L P   +G     +T   I      P     W+LSVQTHK+ GI
Sbjct: 193 HYYLSPCEQNGVMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 239


>gi|104781624|ref|YP_608122.1| hypothetical protein PSEEN2518 [Pseudomonas entomophila L48]
 gi|95110611|emb|CAK15322.1| conserved hypothetical protein [Pseudomonas entomophila L48]
          Length = 229

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 70/142 (49%), Gaps = 22/142 (15%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           ++E+F TLQGEG ++G  + F R SGCNL           QC +CDT F   + +   + 
Sbjct: 19  VEEVFRTLQGEGPYSGVPSTFVRLSGCNL-----------QCYWCDTQFEAFRWSMTPQA 67

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI--E 123
            V+ +  L               VLTGGEP  Q   PLIQ     GF++ +ETNGTI   
Sbjct: 68  IVEMIRGL-------EAPVPELVVLTGGEPFRQSIAPLIQVFLDEGFKVQIETNGTIYQA 120

Query: 124 PPQGIDWICV-SPKAGC-DLKI 143
            P G D   V SPK    DL++
Sbjct: 121 IPTGQDVTVVCSPKTPVLDLRM 142


>gi|220926065|ref|YP_002501367.1| radical SAM domain-containing protein [Methylobacterium nodulans
           ORS 2060]
 gi|219950672|gb|ACL61064.1| Radical SAM domain protein [Methylobacterium nodulans ORS 2060]
          Length = 230

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 104/253 (41%), Gaps = 65/253 (25%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF------ 54
           M ++++ EIF T QGE    G  +VF R  GC +            C FCDT        
Sbjct: 1   MTVFAVNEIFETFQGEAAFTGTPSVFVRLQGCPV-----------GCAFCDTKMTWHVRP 49

Query: 55  -----VGIQGTKG------GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
                VG    K        R + + LA L+      GE   R+ V TGGEP L     +
Sbjct: 50  EHEIEVGAMIAKTEDAPTWARLHDEDLAMLV------GEFRARHVVFTGGEPALYDLTEV 103

Query: 104 IQALNKRGFEIAVETNGT----IEPPQGIDWICVSPKA---------------GCDLKIK 144
            + L  +G  + +ET+GT    I+P     W+ VSPK                  ++K+ 
Sbjct: 104 SRRLIDQGRTVQLETSGTALIRIDPHA---WVTVSPKIDMPGGLKVLPAAVARANEIKMP 160

Query: 145 GGQELKLVFPQVNVSPENYIGFDFE------RFSLQPMDGPFLEENTNLAISYCFQNPKW 198
            G+   +   Q  ++    +G  +          LQP+     E+ T L +     N  W
Sbjct: 161 IGKPADIEKLQAFLAEHPAVGVAYTGSGPALLIWLQPLSQS--EKATALCMEAAAAN-GW 217

Query: 199 RLSVQTHKFIGIR 211
           RLS+QTHKF+G+R
Sbjct: 218 RLSLQTHKFVGVR 230


>gi|225025886|ref|ZP_03715078.1| hypothetical protein EUBHAL_00114 [Eubacterium hallii DSM 3353]
 gi|224956783|gb|EEG37992.1| hypothetical protein EUBHAL_00114 [Eubacterium hallii DSM 3353]
          Length = 221

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 18/123 (14%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y + E F+++ GEG  AG++A F R  GCNL            C +CDT +   +  
Sbjct: 1   MITYPVVEKFVSINGEGQKAGKIAAFIRMRGCNL-----------ACNYCDTSWANTKDC 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
                + ++L   ++E  I          LTGGEPLL  ++ PLI+AL   GF + +ETN
Sbjct: 50  PCEFLSAEELITWLKEHSIEN------VTLTGGEPLLTEEIAPLIEALGTAGFSVEIETN 103

Query: 120 GTI 122
           G++
Sbjct: 104 GSV 106


>gi|32472078|ref|NP_865072.1| radical activating enzyme [Rhodopirellula baltica SH 1]
 gi|32397450|emb|CAD72756.1| conserved hypothetical protein-putative radical activating enzyme
           [Rhodopirellula baltica SH 1]
          Length = 257

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 19/132 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E F++ QGEG   G  +VF R SGCNL           +C FCDT +   +  +G R 
Sbjct: 32  ISETFVSRQGEGELTGTESVFIRTSGCNL-----------RCWFCDTPYASWK-PEGTRQ 79

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            ++ L  L+ +  +      ++ VLTGGEPL+    V LI  L   G  + +ET GT++P
Sbjct: 80  TIEDLLQLVAKSGV------KHVVLTGGEPLIAKGIVSLIDQLRSAGNHVTIETAGTVDP 133

Query: 125 PQGIDWICVSPK 136
               D + +SPK
Sbjct: 134 GARCDLLSLSPK 145


>gi|312171327|emb|CBX79586.1| Uncharacterized protein ygcF [Erwinia amylovora ATCC BAA-2158]
          Length = 223

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 101/231 (43%), Gaps = 35/231 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLS-AQCRFCDTDFVGI 57
           Y I E+F TLQGEG + G  A+F R  GC +   W   +   D+L+  +    D     +
Sbjct: 3   YPINEMFQTLQGEGVYTGVPAIFIRLQGCPVGCSWCDTKHTWDKLANRETSLGDILLKTV 62

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +    G  +   L + I     T     ++ V+TGGEP +    PL  AL   GF   +E
Sbjct: 63  ESDAWGAADAPALLETIRRHGWT----AKHIVITGGEPCIYDLTPLTAALQGSGFSCQIE 118

Query: 118 TNGTIEPPQGID-WICVSPKAGCDLKIKGGQEL------------KLVFPQVNVSPENYI 164
           T+GT E     + W+ VSPK    + ++GG ++              V  Q +V   + +
Sbjct: 119 TSGTHEVHCTAETWVTVSPK----VNMRGGYDVLNQALVRADEVKHPVARQRDVDALDDL 174

Query: 165 GFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                       +LQP+      + T L I  C     WRLS+QTHK++ I
Sbjct: 175 LATLSDNKARIIALQPVSQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222


>gi|114563049|ref|YP_750562.1| radical activating enzyme [Shewanella frigidimarina NCIMB 400]
 gi|114334342|gb|ABI71724.1| radical activating enzyme [Shewanella frigidimarina NCIMB 400]
          Length = 222

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 107/234 (45%), Gaps = 42/234 (17%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL----------WSGREQDRLSAQCRFCDTD 53
           Y + E+F T+QGEG + G  A+F R  GC +          W    +++++A+       
Sbjct: 3   YPVNEVFETIQGEGTYTGVPALFVRLQGCPVGCAWCDTKQTWDVLPENKVTAE------Q 56

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
            + + GT  GR+  D     + + +       ++ VLTGGEP L     L     + G++
Sbjct: 57  VIQVDGTI-GRW-ADHTGYTLLQAFHDKGFTAKHIVLTGGEPCLYNLTELTTIFIEAGYQ 114

Query: 114 IAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENY--- 163
           + +ET+GT +     D W+ VSPK    + +KGG + L+    + N     ++ E++   
Sbjct: 115 VQIETSGTFDVKCHSDVWVTVSPK----INMKGGYKVLEQALNRANEIKHPIATEHHIDE 170

Query: 164 -------IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                  I    +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 171 LDKLLLNIDVSDKTICLQPISQK--ARATELAMKVCISR-NWRLSIQTHKYLNI 221


>gi|238791241|ref|ZP_04634880.1| hypothetical protein yinte0001_29930 [Yersinia intermedia ATCC
           29909]
 gi|238729374|gb|EEQ20889.1| hypothetical protein yinte0001_29930 [Yersinia intermedia ATCC
           29909]
          Length = 216

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 99/229 (43%), Gaps = 41/229 (17%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGTKG--- 62
           +F TLQGEG   G  A+F R  GC +   W   +        R  D   + ++  +    
Sbjct: 1   MFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKEADREVDMQRIMVKTAESDAW 60

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           G  +  QL D+  +Q  T     R+ V+TGGEP +    PL   L + G+   +ET+GT 
Sbjct: 61  GEASAQQLLDIFSQQGYTA----RHVVITGGEPAIYDLFPLTSLLEQAGYSCQIETSGTH 116

Query: 123 EPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY------------------ 163
           +       W+ VSPK    + ++GG +   V PQ     +                    
Sbjct: 117 DVRCSATTWVTVSPK----VNMRGGLK---VLPQALQRADEIKHPVGRMRDIEALEVLLA 169

Query: 164 -IGFDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +  D +R  +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 170 TLDDDKKRIIALQPISQK--DDATKLCIETCIAK-NWRLSMQTHKYLNI 215


>gi|163752023|ref|ZP_02159232.1| radical activating enzyme [Shewanella benthica KT99]
 gi|161328075|gb|EDP99244.1| radical activating enzyme [Shewanella benthica KT99]
          Length = 222

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 105/230 (45%), Gaps = 34/230 (14%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y + E+F T+QGEG   G  A+F R  GC          + W   E++R++ +       
Sbjct: 3   YPVNEVFETIQGEGVFTGVAAIFVRLQGCPVGCSWCDTKHTWDVLEKNRVAPEL------ 56

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
            + + G  G R++     +LI   +I      ++ V+TGGEP +     L   LN++G+ 
Sbjct: 57  VIQVDGVIG-RWSELTAEELIN-FFIRKGFNAKHVVITGGEPCIHDLTELTSQLNRQGYG 114

Query: 114 IAVETNGTIEPP-QGIDWICVSP----KAGCDL---KIKGGQELKLVFP---QVNVSPEN 162
             +ET+GT E       W+ VSP    KAG  +    ++   E+K        ++   E 
Sbjct: 115 TQIETSGTFEVTCSDKTWVTVSPKVNMKAGMTVLTQALERADEIKHPVARSKHIDDLDEL 174

Query: 163 YIGFDFE--RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             G + E     LQP+        T LA+  C +   WRLS+QTHK++ I
Sbjct: 175 LEGIEVEGKIICLQPISQK--PRATELAMKICIER-NWRLSIQTHKYLNI 221


>gi|15897539|ref|NP_342144.1| hypothetical protein SSO0624 [Sulfolobus solfataricus P2]
 gi|13813792|gb|AAK40934.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
          Length = 211

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 74/154 (48%), Gaps = 30/154 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y + EIF ++QGEG   G  + F R + CNL           +C +CDT +    GT+  
Sbjct: 6   YRVIEIFTSIQGEGEVIGIPSNFIRLATCNL-----------RCVWCDTKYSWEIGTEMS 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
                     I+E     +K+ +   +TGGEPLLQ  +PL + L   G +I VETNGTI+
Sbjct: 55  ----------IDEIIAKLDKKIKTTTITGGEPLLQNILPLAKELKSIGHKIVVETNGTIK 104

Query: 124 PPQG----IDWICVSPKAGCDLKIKGGQELKLVF 153
           P +     ID   VSPK         G +LK  F
Sbjct: 105 PSEELRKIIDIFSVSPKLS-----NSGHKLKYDF 133


>gi|284174859|ref|ZP_06388828.1| hypothetical protein Ssol98_09426 [Sulfolobus solfataricus 98/2]
 gi|261602301|gb|ACX91904.1| Radical SAM domain protein [Sulfolobus solfataricus 98/2]
          Length = 208

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 74/154 (48%), Gaps = 30/154 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y + EIF ++QGEG   G  + F R + CNL           +C +CDT +    GT+  
Sbjct: 3   YRVIEIFTSIQGEGEVIGIPSNFIRLATCNL-----------RCVWCDTKYSWEIGTEMS 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
                     I+E     +K+ +   +TGGEPLLQ  +PL + L   G +I VETNGTI+
Sbjct: 52  ----------IDEIIAKLDKKIKTTTITGGEPLLQNILPLAKELKSIGHKIVVETNGTIK 101

Query: 124 PPQG----IDWICVSPKAGCDLKIKGGQELKLVF 153
           P +     ID   VSPK         G +LK  F
Sbjct: 102 PSEELRKIIDIFSVSPKLS-----NSGHKLKYDF 130


>gi|86145928|ref|ZP_01064256.1| Organic radical activating enzyme [Vibrio sp. MED222]
 gi|85836383|gb|EAQ54513.1| Organic radical activating enzyme [Vibrio sp. MED222]
          Length = 216

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 103/240 (42%), Gaps = 63/240 (26%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68
           +F T+QGEG   G  AVF R   C +            C +CDT     Q  +    +  
Sbjct: 1   MFETIQGEGVFTGVPAVFVRLQICPV-----------GCSWCDTK----QTWEALPEDET 45

Query: 69  QLADL------------IEEQWITGE--KEG---RYCVLTGGEPLLQVDVPLIQALNKRG 111
            L D+            I+ Q I  E  K+G   ++ V+TGGEP +   VPL +A  + G
Sbjct: 46  SLGDIMVKTEDSPTWTAIDAQGIVNEYIKQGYTAKHIVITGGEPCIYDLVPLTEAFEQHG 105

Query: 112 FEIAVETNGTIEPPQGID-WICVSPKAGCDLKI--------------------KGGQELK 150
               +ET+GT E     D W+ VSPK     K+                    K  ++L 
Sbjct: 106 CRCQIETSGTSEVKATPDTWVTVSPKVAMKAKLDILDSALVRANEIKHPVGTGKDIEQLD 165

Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           ++  + +V PEN +       +LQP+     E  T L I  C +   WRLS+QTHK++ I
Sbjct: 166 VLIARADV-PENTV------IALQPISQK--ERATQLCIDTCIER-NWRLSIQTHKYLSI 215


>gi|167757163|ref|ZP_02429290.1| hypothetical protein CLORAM_02713 [Clostridium ramosum DSM 1402]
 gi|167703338|gb|EDS17917.1| hypothetical protein CLORAM_02713 [Clostridium ramosum DSM 1402]
          Length = 220

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 18/124 (14%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y + E F+++ GEG  AG++A F RF  CNL            C +CDT +     +
Sbjct: 1   MNNYKVVEKFISINGEGSRAGQLAAFIRFHYCNL-----------NCSYCDTRYANDSNS 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
                +   + D ++   +          LTGGEPLLQ ++  LI  L K GF + +ETN
Sbjct: 50  NYELLSAQNILDYLKANKVVN------VTLTGGEPLLQQNIDYLIDLLLKNGFSVEIETN 103

Query: 120 GTIE 123
           G+I+
Sbjct: 104 GSID 107


>gi|237735749|ref|ZP_04566230.1| radical SAM-superfamily protein [Mollicutes bacterium D7]
 gi|229381494|gb|EEO31585.1| radical SAM-superfamily protein [Coprobacillus sp. D7]
          Length = 220

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 18/124 (14%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y + E F+++ GEG  AG++A F RF  CNL            C +CDT +     +
Sbjct: 1   MNNYKVVEKFISINGEGSRAGQLAAFIRFHYCNL-----------NCSYCDTRYANDSNS 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
                +   + D ++   +          LTGGEPLLQ ++  LI  L K GF + +ETN
Sbjct: 50  NYELLSAQNILDYLKTNKVVN------VTLTGGEPLLQQNIDYLIDLLLKNGFSVEIETN 103

Query: 120 GTIE 123
           G+I+
Sbjct: 104 GSID 107


>gi|283479535|emb|CAY75451.1| Uncharacterized protein ygcF [Erwinia pyrifoliae DSM 12163]
          Length = 277

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 102/231 (44%), Gaps = 35/231 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLS-AQCRFCDTDFVGI 57
           Y I E+F TLQGEG + G  A+F R  GC +   W   +   D+L+  +    D     +
Sbjct: 57  YPINEMFQTLQGEGFYTGVPAIFIRLQGCPVGCSWCDTKHTWDKLADRETSLGDILLKTV 116

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +    G  +   L + I     T     ++ V+TGGEP +    PL  AL   GF   +E
Sbjct: 117 ETDAWGAADAPALLETIRRHGWT----AKHIVITGGEPCIYDLTPLTAALQDSGFSCQIE 172

Query: 118 TNGTIEPP-QGIDWICVSPKAGCDLKIKGGQEL---------KLVFP-----QVNVSPEN 162
           T+GT +       W+ VSPK    + ++GG ++         ++  P      V+   E 
Sbjct: 173 TSGTHQVRCTAQTWVTVSPK----VNMRGGYDVLNQALVRADEVKHPVARQRDVDALDEL 228

Query: 163 YIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               +  +    +LQP+      + T L I  C     WRLS+QTHK++ I
Sbjct: 229 LATLNDNKARIIALQPISQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 276


>gi|254526725|ref|ZP_05138777.1| radical activating enzyme [Prochlorococcus marinus str. MIT 9202]
 gi|221538149|gb|EEE40602.1| radical activating enzyme [Prochlorococcus marinus str. MIT 9202]
          Length = 227

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 99/237 (41%), Gaps = 51/237 (21%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E F +LQGEG HAG+ A F R +GC +            C +CDT           +Y
Sbjct: 11  IVEQFHSLQGEGYHAGKSAFFVRLAGCKV-----------GCSWCDTK----NSWDEKKY 55

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGFEIAVET 118
               +  +I+   I  +K   +CV+TGGEPL        +A+ K          +I +ET
Sbjct: 56  PSISIKKIIDRIKIARDKGASFCVITGGEPLQHNLDNFCKAIKKMTMREEQNSMKIHIET 115

Query: 119 NGTIEPPQGIDWICVSPK----------AGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
           +G        DW+ +SPK            C+       ++K +   + +  E    +  
Sbjct: 116 SGVNSISGSYDWMTLSPKRHSPPKNYFLKNCNEIKIIINDIKDIEFAIQIKKETLKQYQL 175

Query: 169 ER-----------FSLQPMDGPFLEENTN---LAISYCFQNPKWRLSVQTHKFIGIR 211
            +           F LQP        N+N   LAI +   NP W+LS+QTHK++ I+
Sbjct: 176 SKSEDGLKREDKIFYLQPA-----WNNSNGLSLAIDFVKNNPDWKLSLQTHKYLKIK 227


>gi|146312870|ref|YP_001177944.1| radical SAM domain-containing protein [Enterobacter sp. 638]
 gi|145319746|gb|ABP61893.1| Radical SAM domain protein [Enterobacter sp. 638]
          Length = 223

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 102/249 (40%), Gaps = 71/249 (28%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDT----------- 40

Query: 64  RYNVDQLADLI------------EEQWITGEKE------------GRYCVLTGGEPLLQV 99
           ++  D+LAD               ++W  G  E             R+ V+TGGEP +  
Sbjct: 41  KHTWDKLADREVSLFSILAKTKESDKWGAGSAEDLLAIIGRQGWTARHVVITGGEPCIHD 100

Query: 100 DVPLIQALNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQEL--------- 149
            + L   L K G+   +ET+GT E       W+ VSPK    + ++GG ++         
Sbjct: 101 LMSLTDLLEKNGYSCQIETSGTHEVRCSHTAWVTVSPK----VNMRGGYDVLSQALERAD 156

Query: 150 KLVFP-----QVNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLS 201
           ++  P      +    E       E+    +LQP+     ++ T L I  C     WRLS
Sbjct: 157 EIKHPVGRMRDIEALDELLATLTDEKQRIIALQPISQK--DDATRLCIETCIAR-NWRLS 213

Query: 202 VQTHKFIGI 210
           +QTHK++ I
Sbjct: 214 MQTHKYLNI 222


>gi|259909462|ref|YP_002649818.1| hypothetical protein EpC_28370 [Erwinia pyrifoliae Ep1/96]
 gi|224965084|emb|CAX56616.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96]
          Length = 223

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 102/231 (44%), Gaps = 35/231 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLS-AQCRFCDTDFVGI 57
           Y I E+F TLQGEG + G  A+F R  GC +   W   +   D+L+  +    D     +
Sbjct: 3   YPINEMFQTLQGEGFYTGVPAIFIRLQGCPVGCSWCDTKHTWDKLADRETSLGDILLKTV 62

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +    G  +   L + I     T     ++ V+TGGEP +    PL  AL   GF   +E
Sbjct: 63  ETDAWGAADAPALLETIRRHGWT----AKHIVITGGEPCIYDLTPLTAALQDSGFSCQIE 118

Query: 118 TNGTIEPP-QGIDWICVSPKAGCDLKIKGGQEL---------KLVFP-----QVNVSPEN 162
           T+GT +       W+ VSPK    + ++GG ++         ++  P      V+   E 
Sbjct: 119 TSGTHQVRCTAQTWVTVSPK----VNMRGGYDVLNQALVRADEVKHPVARQRDVDALDEL 174

Query: 163 YIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               +  +    +LQP+      + T L I  C     WRLS+QTHK++ I
Sbjct: 175 LATLNDNKARIIALQPISQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222


>gi|310766631|gb|ADP11581.1| Uncharacterized protein ygcF [Erwinia sp. Ejp617]
          Length = 223

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 102/231 (44%), Gaps = 35/231 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLS-AQCRFCDTDFVGI 57
           Y I E+F TLQGEG + G  A+F R  GC +   W   +   D+L+  +    D     +
Sbjct: 3   YPINEMFQTLQGEGFYTGVPAIFIRLQGCPVGCSWCDTKHTWDKLANRETSLGDILLKTV 62

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +    G  +   L + I     T     ++ V+TGGEP +    PL  AL   GF   +E
Sbjct: 63  ETDAWGAADAPALLETIRRHGWT----AKHIVITGGEPCIYDLTPLTAALQDSGFSCQIE 118

Query: 118 TNGTIEPP-QGIDWICVSPKAGCDLKIKGGQEL---------KLVFP-----QVNVSPEN 162
           T+GT +       W+ VSPK    + ++GG ++         ++  P      V+   E 
Sbjct: 119 TSGTHQVRCTAQTWVTVSPK----VNMRGGYDVLNQALARADEVKHPVARQRDVDALDEL 174

Query: 163 YIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               +  +    +LQP+      + T L I  C     WRLS+QTHK++ I
Sbjct: 175 LATLNDNKARIIALQPISQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222


>gi|84387075|ref|ZP_00990098.1| Organic radical activating enzyme [Vibrio splendidus 12B01]
 gi|84378150|gb|EAP95010.1| Organic radical activating enzyme [Vibrio splendidus 12B01]
          Length = 216

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 102/240 (42%), Gaps = 63/240 (26%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68
           +F T+QGEG   G  AVF R   C +            C +CDT     Q  +    +  
Sbjct: 1   MFETIQGEGVFTGVPAVFVRLQICPV-----------GCSWCDTK----QTWEALPEDET 45

Query: 69  QLADL------------IEEQWITGE--KEG---RYCVLTGGEPLLQVDVPLIQALNKRG 111
            L D+            I+ Q I  E  K+G   ++ V+TGGEP +   VPL +A  + G
Sbjct: 46  SLGDIMVKTEDSPTWSAIDAQGIVNEYIKQGYTAKHIVITGGEPCIYDLVPLTEAFEQHG 105

Query: 112 FEIAVETNGTIEPPQGID-WICVSPKAGCDLKI--------------------KGGQELK 150
               +ET+GT E     D W+ VSPK     K+                    K  ++L 
Sbjct: 106 CRCQIETSGTSEVKATPDTWVTVSPKVAMKAKLDILDSALVRANEIKHPVGTGKDIEQLD 165

Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +  + +V PEN +       +LQP+     E  T L I  C +   WRLS+QTHK++ I
Sbjct: 166 ALIARADV-PENTV------IALQPISQK--ERATQLCIDTCIER-NWRLSIQTHKYLSI 215


>gi|308049094|ref|YP_003912660.1| radical activating enzyme [Ferrimonas balearica DSM 9799]
 gi|307631284|gb|ADN75586.1| radical activating enzyme [Ferrimonas balearica DSM 9799]
          Length = 222

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 102/241 (42%), Gaps = 56/241 (23%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------- 53
           Y + EIF T+QGEG   G  AVF R  GC +            C +CDT           
Sbjct: 3   YPVNEIFETIQGEGHFTGVPAVFLRLQGCPV-----------GCAWCDTRHTWEVLAEDQ 51

Query: 54  ----FVGIQGTKGGRYNVDQLADLIEEQWITGEK-EGRYCVLTGGEPLLQVDVPLIQALN 108
                V   G    R+    L  L+    +TG +   R+ V+TGGEP +    PL + + 
Sbjct: 52  VEPGLVIGAGDGEPRWAQWPLEQLVAH--LTGPQYRARHLVITGGEPCMYDLRPLTERMI 109

Query: 109 KRGFEIAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQELKL------------VF 153
             G+   +ET+G  E    PQ   W+ VSPK G    +KGG E++             V 
Sbjct: 110 AAGWRCQIETSGCFEVKTDPQ--TWVTVSPKVG----MKGGLEVQRSALERANEIKHPVA 163

Query: 154 PQVNVSPENY----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
            Q +V   +     +  + +  +LQP+          L +  C +   WRLSVQTHK++ 
Sbjct: 164 MQKHVDELDALLAGVALEGKEVALQPISQQH--RANELCVRVCIER-NWRLSVQTHKYLN 220

Query: 210 I 210
           I
Sbjct: 221 I 221


>gi|77360060|ref|YP_339635.1| queC protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76874971|emb|CAI86192.1| queC protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 215

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 102/234 (43%), Gaps = 52/234 (22%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------FVGIQG 59
           +F T+QGE  + G  ++F R  GC +            C +CDT           V +  
Sbjct: 1   MFETIQGEASYTGTPSIFLRLQGCPV-----------GCSWCDTKQTWDVDNVYKVSLDE 49

Query: 60  TKGGRYNVDQLADL----IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
           T   + + D  A      I   + +     ++ V+TGGEP +    P+   L++ GF   
Sbjct: 50  TVEKKADSDHWAQASAANILALFQSRGYTAKHVVITGGEPCMYDLNPVCNLLHENGFSTQ 109

Query: 116 VETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVN-----VSPENYI-- 164
           +ET+GT E   P Q   W+ VSPK    + ++GG E L     + N     V+ + ++  
Sbjct: 110 IETSGTFEILAPAQ--TWVTVSPK----INMRGGFEVLTTAMQRANEIKHPVAMQKHVEE 163

Query: 165 --------GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                   G + +   LQP+     E  T LAI  C     WRLS+Q HK++GI
Sbjct: 164 LEELFVKTGVNPKLVYLQPISQK--ESATKLAIKTCIAK-NWRLSIQVHKYLGI 214


>gi|330959274|gb|EGH59534.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 215

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            V  L D+IE+         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G    
Sbjct: 51  -VQALDDIIEQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
              +D   V P+     DLK  G +E+
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127


>gi|157414296|ref|YP_001485162.1| putative organic radical activating protein [Prochlorococcus
           marinus str. MIT 9215]
 gi|157388871|gb|ABV51576.1| possible organic radical activating enzyme [Prochlorococcus marinus
           str. MIT 9215]
          Length = 223

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 98/237 (41%), Gaps = 51/237 (21%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E F +LQGEG HAG+ A F R +GC +            C +CDT           +Y
Sbjct: 7   IVEQFHSLQGEGYHAGKSAFFVRLAGCKV-----------GCSWCDTK----NSWDEKKY 51

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGFEIAVET 118
               +  +I+   I  +K   +CV+TGGEPL        +A+ K          +I +ET
Sbjct: 52  PSISIKKIIDRIKIARDKGASFCVITGGEPLQHNLDNFCKAIKKMTMREEQNSMKIHIET 111

Query: 119 NGTIEPPQGIDWICVSPK----------AGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
           +G        DW+ +SPK            C+       ++K +   + +  E    +  
Sbjct: 112 SGVNSISGSYDWMTLSPKRHSPPKNYFLKKCNEIKIIINDIKDIEFAIQIKKETLKQYQL 171

Query: 169 ER-----------FSLQPMDGPFLEENTN---LAISYCFQNPKWRLSVQTHKFIGIR 211
            +           F LQP        N N   LAI +   NP W+LS+QTHK++ I+
Sbjct: 172 SKSEDGLKKEDKIFYLQPA-----WNNANGLSLAIDFVKNNPDWKLSLQTHKYLKIK 223


>gi|237809236|ref|YP_002893676.1| radical activating enzyme [Tolumonas auensis DSM 9187]
 gi|237501497|gb|ACQ94090.1| radical activating enzyme [Tolumonas auensis DSM 9187]
          Length = 225

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 105/242 (43%), Gaps = 58/242 (23%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF ++QGEG  +G  A+F R  GC +            C +CDT        +  
Sbjct: 6   YPINEIFQSIQGEGFFSGVPAIFVRLQGCKV-----------GCSWCDTK----HSWELD 50

Query: 64  RYNVDQLADLIEEQ-------WITGEK----------EGRYCVLTGGEPLLQVDVPLIQA 106
             N+  +  L  ++       W++ E+            R+ V+TGGEP     + L Q 
Sbjct: 51  ADNLIPVRQLFTDKKPKAGWSWLSPEEILSCFSAEEYTARHVVITGGEPCEYDLMVLSQT 110

Query: 107 LNKRGFEIAVETNGTIEPPQGID--WICVSPKAGCDLKIKGGQE-LKLVFPQVN-----V 158
           L   G+ + +ET+GT +P Q  D  W+ VSPK    + + GG + L  V  + N     V
Sbjct: 111 LIAHGYRVQIETSGT-QPVQADDACWVTVSPK----INMAGGYDVLPDVLLRANEIKHPV 165

Query: 159 SPENYI--------GFDFER--FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           +   +I        G D       LQP+        T LA+  C Q   WRLSVQ HK++
Sbjct: 166 ATAKHIAQLDALLAGIDTSEKVICLQPISQK--SRATELAMKICIQR-NWRLSVQLHKYL 222

Query: 209 GI 210
            I
Sbjct: 223 DI 224


>gi|307594720|ref|YP_003901037.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM
           14429]
 gi|307549921|gb|ADN49986.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 220

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 26/152 (17%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK   + EIF + QGEG +AGR AVF R + CNL           +C +CDT +    GT
Sbjct: 1   MKSVRVIEIFKSWQGEGPNAGREAVFLRLALCNL-----------RCSWCDTKYSWFGGT 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVET 118
           +   ++V        E  +      R+ V+TGGEPLL  +  + L++ +  +GF + VET
Sbjct: 50  EMNVHDV-------YEVLMKTAGGVRHLVVTGGEPLLWSRELLQLLRFIRAQGFFVEVET 102

Query: 119 NGTIEPPQGIDWI---CVSPK---AGCDLKIK 144
           NGT+ P + ++++    VSPK   +G  ++++
Sbjct: 103 NGTLRPGELVNYVDEFNVSPKLSNSGVSVRVR 134


>gi|108763752|ref|YP_628748.1| radical SAM domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108467632|gb|ABF92817.1| radical SAM domain protein [Myxococcus xanthus DK 1622]
          Length = 230

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           +KEI+L++QGE  HAG +  F R +GC+L           +C +CD++F    G +    
Sbjct: 21  VKEIYLSVQGESSHAGLLCAFIRLTGCHL-----------RCTYCDSEFAFHGGAR---- 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
              ++AD++ E  + G +     V TGGEPLLQ  V PL++AL   GF++ +ET+G I+
Sbjct: 66  --RKIADIVSE--VRGLRTPMVEV-TGGEPLLQPGVYPLMEALLDAGFKVLLETSGAID 119


>gi|148243542|ref|YP_001228699.1| organic radical activating protein [Synechococcus sp. RCC307]
 gi|147851852|emb|CAK29346.1| Organic radical activating enzyme [Synechococcus sp. RCC307]
          Length = 202

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 102/228 (44%), Gaps = 43/228 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    + E F +LQGEG HAGR A F R  GC +            C +CDT     Q  
Sbjct: 1   MSSLPVVETFHSLQGEGLHAGRSAFFIRLGGCTV-----------GCSWCDTKHSWPQTA 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA--VET 118
               +   +   L  E     ++   + V+TGGEPL        QAL +    +   +ET
Sbjct: 50  ----HPALETQALAAEAAEAQQQGAAFVVITGGEPLHHNLDGFCQALAEMAPTLPRHLET 105

Query: 119 NGTIEPPQG-IDWICVSPKAG----------CD-LK--IKGGQELKLVFPQVNVSPENYI 164
           +G ++P  G   WI +SPKA           CD LK  + G ++L         +P+ + 
Sbjct: 106 SG-VDPLSGSFSWITLSPKAHKPPTQELLACCDELKAVVHGPEDLAFAEAMAAQAPQAH- 163

Query: 165 GFDFERFSLQP-MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                 + LQP  D P   +   LA+ +   +P WRLS+Q+HK++G+R
Sbjct: 164 ------WLLQPGWDSP---QGQQLAVEFVRNHPLWRLSLQSHKWLGVR 202


>gi|159900637|ref|YP_001546884.1| radical SAM domain-containing protein [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893676|gb|ABX06756.1| Radical SAM domain protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 230

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 20/141 (14%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           ++ E++ ++QGEG   G    F RF  CNL           +C +CDT +      +GG+
Sbjct: 2   NVMEVYRSVQGEGTLMGVPTTFVRFFACNL-----------RCSWCDTKY-SWSVKEGGK 49

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
           +    +A L +      ++  R+ VLTGGEP+LQ ++P L Q L   G  + VETN T+ 
Sbjct: 50  WEDLPIATLAQR---IADQGARHVVLTGGEPMLQRELPALAQTLRAAGHHLTVETNSTLF 106

Query: 124 PPQGIDWI---CVSPK-AGCD 140
            P+ ++ I    +SPK AG +
Sbjct: 107 RPELVELINLWSLSPKLAGAN 127


>gi|153005327|ref|YP_001379652.1| radical SAM domain-containing protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152028900|gb|ABS26668.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 210

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 105/229 (45%), Gaps = 55/229 (24%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF +LQGEG  AGR  VF RF+GC+L           +C +CD+ +    G +  R 
Sbjct: 3   VTEIFFSLQGEGTRAGRPCVFVRFTGCDL-----------RCGYCDSAYAFHGGRELTRA 51

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG---- 120
            +  LA++            +   LTGGEP+LQ ++P L + L  RG E+ VET+G    
Sbjct: 52  EI--LAEI-------ARHPAKLVCLTGGEPMLQRELPELARELVARGHEVTVETHGQRPL 102

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENYIGF------DFERFSL 173
              PP+ I  +        D+K  G +E       ++ + P++ + F      D+ R+S+
Sbjct: 103 DALPPETIRIV--------DVKTPGSREEAKDLAYLDGLRPQDEVKFVVCSEPDY-RWSV 153

Query: 174 QPMDGPFLEENTNLAISYCF------QNPKW--------RLSVQTHKFI 208
             +    LE   +L  S  +      +  +W        RLS+Q HK I
Sbjct: 154 DVVRRHRLEGRAHLLFSPAWGEVEPRELARWILRDGLDARLSLQIHKVI 202


>gi|146329949|ref|YP_001210257.1| BcepGomrgp37 [Burkholderia phage BcepGomr]
 gi|145321125|gb|ABP63608.1| BcepGomrgp37 [Burkholderia phage BcepGomr]
          Length = 260

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 27/148 (18%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG--------- 56
           +  IF T+QGEG + GR AVF R +GCNL           QC  CDT++           
Sbjct: 22  VHSIFYTIQGEGPYVGRPAVFIRLAGCNL-----------QCPGCDTEYSARKRMGLLEI 70

Query: 57  IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
           +   +   Y   + A    E     +      V+TGGEP  Q   PLI  L+  G+++ +
Sbjct: 71  LTAVQTAIYTRPR-ARFALEPAFERKIPRPLIVITGGEPFRQSLFPLIWKLSGLGYKVQI 129

Query: 117 ETNGTIEPPQGI--DW----ICVSPKAG 138
           E+NGT+ P  G   +W    + +SPKAG
Sbjct: 130 ESNGTLAPLAGPFEEWPPFEVVISPKAG 157


>gi|229592292|ref|YP_002874411.1| putative radical SAM-superfamily protein [Pseudomonas fluorescens
           SBW25]
 gi|229364158|emb|CAY51804.1| putative radical SAM-superfamily protein [Pseudomonas fluorescens
           SBW25]
          Length = 215

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 29/146 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            V  L D++E+  + G K  RY  +TGGEPL Q + +PL++ L   G+E+++ET+G    
Sbjct: 51  -VRTLDDILEQ--VAGYKP-RYVCVTGGEPLAQPNAIPLLKQLCDAGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQE 148
              +D   V P+     DLK  G +E
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKE 126


>gi|315126983|ref|YP_004068986.1| queC protein [Pseudoalteromonas sp. SM9913]
 gi|315015497|gb|ADT68835.1| queC protein [Pseudoalteromonas sp. SM9913]
          Length = 215

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 98/242 (40%), Gaps = 68/242 (28%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------FVGIQG 59
           +F T+QGE    G  ++F R  GC +            C +CDT           V +  
Sbjct: 1   MFETIQGEASFTGTPSIFLRLQGCPV-----------GCSWCDTKQTWDVDNVYKVSLDD 49

Query: 60  TKGGRYNVDQLADLIEEQWITGEKE----GRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
           T   + + D  A+    Q +   K      ++ V+TGGEP +    P+   L+  GF   
Sbjct: 50  TVEKKADSDHWAEASAAQVLELFKSRGYTAKHVVITGGEPCMYDLNPVCNLLHDHGFSTQ 109

Query: 116 VETNGTIE---PPQGIDWICVSPKAGCDLKIKGG------------------------QE 148
           +ET+GT E   P Q   W+ VSPK    + ++GG                        +E
Sbjct: 110 IETSGTFEILAPAQ--TWVTVSPK----INMRGGYKVLSSAMQRADEIKHPVAMQKHVEE 163

Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           L+ +F    V+P        +   LQP+        T LAI  C     WRLS+Q HK++
Sbjct: 164 LEELFTATGVNP--------KLVYLQPISQK--TSATKLAIDTCIAK-NWRLSIQVHKYL 212

Query: 209 GI 210
           GI
Sbjct: 213 GI 214


>gi|269967852|ref|ZP_06181896.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269827557|gb|EEZ81847.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 226

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 94/242 (38%), Gaps = 55/242 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           LY + E+F T+QGEG   G  AVF R   C +            C +CDT          
Sbjct: 5   LYKLNEMFETIQGEGVFTGVPAVFVRLQECPV-----------GCSWCDTKQTWYADEND 53

Query: 63  GRYNVDQL-------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
            R   D L             A+ I EQ+       ++ V+TGGEP +    PL +A   
Sbjct: 54  QRQIGDILVKTEDSPTWCVASAENIVEQYQQQGFNAKHIVITGGEPCIYDLRPLTKAFED 113

Query: 110 RGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKI--------------------KGGQE 148
            G +  +ET+GT E     + W+ VSPK     K+                    K    
Sbjct: 114 MGCQCQIETSGTSEVITSENTWVTVSPKVAMKGKLPVLNSALERANEIKHPVGTQKDIDH 173

Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           L  +    NV+ E  I       +LQP+        T L I  C     WRLSVQTHK++
Sbjct: 174 LDDLLANANVAAETII-------ALQPISQK--PRATQLCIDTCIAR-NWRLSVQTHKYL 223

Query: 209 GI 210
            I
Sbjct: 224 SI 225


>gi|256819499|ref|YP_003140778.1| Radical SAM domain-containing protein [Capnocytophaga ochracea DSM
           7271]
 gi|256581082|gb|ACU92217.1| Radical SAM domain protein [Capnocytophaga ochracea DSM 7271]
          Length = 210

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 93/229 (40%), Gaps = 51/229 (22%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +L  + E F TLQGEG + G  A F R  GC++            C +CD      +  +
Sbjct: 14  ELLPLMEAFYTLQGEGFYKGTAAYFIRLGGCDV-----------GCHWCDVK----ESWQ 58

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
              + +  +  ++ E         +  ++TGGEPL+     L + L   G    +ET+G 
Sbjct: 59  AEAHPLVPVDTIVAE----ALAHSKTIIITGGEPLMWNLTLLTEKLRAGGARTHIETSGA 114

Query: 122 IEPPQGIDWICVSPKAGCDLKIK--------GGQELKLVF-----------PQVNVSPEN 162
                  DWIC+SPK     KIK           ELK+V                VSPE 
Sbjct: 115 HPLSGSWDWICLSPK-----KIKRPVGDVLQKANELKMVIYNNHDFIFAEEMAAQVSPEC 169

Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            +        LQP      E    + + Y   +P+W+ S+Q HK++ IR
Sbjct: 170 LL-------YLQPEWSKRAEVMPKI-VDYVMAHPQWKASLQMHKYLDIR 210


>gi|313906547|ref|ZP_07839877.1| Radical SAM domain protein [Eubacterium cellulosolvens 6]
 gi|313468616|gb|EFR63988.1| Radical SAM domain protein [Eubacterium cellulosolvens 6]
          Length = 218

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 19/120 (15%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F+++ GEG HAG +AVF RF GCNL            C +CDT +    G      
Sbjct: 3   VVEKFVSINGEGTHAGELAVFVRFRGCNL-----------NCSYCDTMWANEPGCPYAEE 51

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALN-KRGFEIAVETNGTIE 123
           + +Q+   IEE  +      +   LTGGEPLLQ ++P L++ L+ K+   + +ETNG ++
Sbjct: 52  SPEQIVSYIEETKV------KNVTLTGGEPLLQKEMPELLRLLSEKKELRVEIETNGAVD 105


>gi|312884429|ref|ZP_07744133.1| hypothetical protein VIBC2010_14679 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367741|gb|EFP95289.1| hypothetical protein VIBC2010_14679 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 238

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 97/241 (40%), Gaps = 51/241 (21%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           KLY + E+F T+QGEG   G  +VF R   C +            C +CDT        K
Sbjct: 16  KLYKVNEMFETIQGEGVFTGVPSVFVRLQECPV-----------GCAWCDTKQTWDASPK 64

Query: 62  GGRYNVDQL-------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
             R   + L             A+ +  +++      R+ V+TGGEP +   +PL +A  
Sbjct: 65  DERTLKEILSKTTDSPTWCRASANDVVSEYLRQGYTARHIVITGGEPCIYDLIPLTEAFE 124

Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY---- 163
               +  +ET+GT E     + W+ VSPK     K+        V P   +         
Sbjct: 125 AINCKCQIETSGTSEVITSPNTWVTVSPKIAMKGKLP-------VLPSALIRANELKHPV 177

Query: 164 -IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK-------------WRLSVQTHKFIG 209
               D +R     + G  L E+T +A+    Q P+             WRLS+QTHK++ 
Sbjct: 178 ATQKDIDRLD-DLLSGVSLSEDTEIALQPISQKPRATELCIEVCIKRNWRLSIQTHKYLS 236

Query: 210 I 210
           I
Sbjct: 237 I 237


>gi|262275962|ref|ZP_06053771.1| queuosine Biosynthesis QueE Radical SAM [Grimontia hollisae CIP
           101886]
 gi|262219770|gb|EEY71086.1| queuosine Biosynthesis QueE Radical SAM [Grimontia hollisae CIP
           101886]
          Length = 220

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 100/236 (42%), Gaps = 45/236 (19%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT----DFVGIQ 58
           +Y++ EIF T+QGEG   G  +VF R  GC              C +CDT    D + + 
Sbjct: 1   MYNVNEIFETIQGEGTFTGIPSVFIRLQGC-----------PVGCPWCDTRQTWDTLPLD 49

Query: 59  ----GTKGGRYNVDQLADLIEEQWITGEKEGRYC----VLTGGEPLLQVDVPLIQALNKR 110
               GT   + +   L   +  + I    + RY     V+TGGEP +   +PL   L+  
Sbjct: 50  QRDFGTIIAKNDESPLWARVSAEDILSHLQSRYTAKHIVITGGEPCMFDLMPLTSLLDAH 109

Query: 111 GFEIAVETNGT-IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----VSPEN-- 162
           G+   +ET+GT +       W+ VSPK     K+     LK    + N     V  E+  
Sbjct: 110 GYRCQIETSGTYVVYATENTWVTVSPKINMRGKLPI---LKEALDRANEIKHPVGTESDI 166

Query: 163 --------YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                   ++    +  +LQP+        T L I  C     WRLSVQTHK++ I
Sbjct: 167 EKLDELLKHVDLKGKEVALQPISQK--ARATALCIETCIAR-NWRLSVQTHKYLNI 219


>gi|154175412|ref|YP_001407498.1| FO synthase subunit 2 [Campylobacter curvus 525.92]
 gi|153793229|gb|EAU01215.2| FO synthase subunit 2 2 (7,8-didemethyl-8-hydroxy-5-deazariboflavin
           synthase subunit 2 2) [Campylobacter curvus 525.92]
          Length = 256

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 69/126 (54%), Gaps = 11/126 (8%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNL----WSGREQDRLSAQCRF-CDTDFVGIQGT-K 61
           E FL++QGEG + GR+AVF RF GCNL    +  + +   + +    CD+     +G  K
Sbjct: 13  ESFLSVQGEGAYQGRLAVFLRFFGCNLNCIGFDVKTRSNKTGEILIGCDSARAVFKGHFK 72

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----VPLIQALNKRGFEIAVE 117
             RY+ D++  L+ +    G K     VLTGGEPL+       + L+Q L   GF++  E
Sbjct: 73  SKRYSSDEILSLV-KNICKGLKTRPIVVLTGGEPLIHHKNENFINLVQNLLNLGFDVHFE 131

Query: 118 TNGTIE 123
           TNGTIE
Sbjct: 132 TNGTIE 137


>gi|315180245|gb|ADT87159.1| Organic radical activating enzyme [Vibrio furnissii NCTC 11218]
          Length = 246

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 97/231 (41%), Gaps = 33/231 (14%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59
           LY + E+F T+QGEG   G  AVF R   C +   W   +Q   +A       D + ++ 
Sbjct: 25  LYKVNEMFETIQGEGVFTGVPAVFVRLQECPVGCAWCDTKQTWDAAPADERSFDEILVKT 84

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
                +       +IE     G    ++ V+TGGEP +   VPL QA    G    +ET+
Sbjct: 85  EDNPNWCSASAQQIIERYRAQG-YTAKHIVITGGEPCIYDLVPLTQAFEAIGCRCQIETS 143

Query: 120 GTIEPPQGID-WICVSPKAG-------CDLKIKGGQELKL-VFPQVNVS----------- 159
           GT       + W+ VSPK          D+ ++   E+K  V  + ++            
Sbjct: 144 GTFAVQATENTWVTVSPKVAMKGKLPVVDVALQRANEIKHPVATEKDIDNLDQLLARAGV 203

Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           PE  +       +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 204 PETTV------VALQPISQK--PRATQLCIDTCIAR-NWRLSIQTHKYLSI 245


>gi|260768533|ref|ZP_05877467.1| queuosine Biosynthesis QueE Radical SAM [Vibrio furnissii CIP
           102972]
 gi|260616563|gb|EEX41748.1| queuosine Biosynthesis QueE Radical SAM [Vibrio furnissii CIP
           102972]
          Length = 246

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 94/227 (41%), Gaps = 25/227 (11%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59
           LY + E+F T+QGEG   G  AVF R   C +   W   +Q   +A       D + ++ 
Sbjct: 25  LYKVNEMFETIQGEGVFTGVPAVFVRLQECPVGCAWCDTKQTWDAAPADERSFDEILVKT 84

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
                +       +IE     G    ++ V+TGGEP +   VPL QA    G    +ET+
Sbjct: 85  EDNPNWCSASAQQIIERYRAQGYT-AKHIVITGGEPCIYDLVPLTQAFEAIGCRCQIETS 143

Query: 120 GTIEPPQGID-WICVSPKAG-------CDLKIKGGQELKLVFPQVNVSPENYIGFDFER- 170
           GT       + W+ VSPK          D+ ++   E+K   P       + +     R 
Sbjct: 144 GTFAVQATENTWVTVSPKVAMKGKLPVVDVALQRANEIK--HPVATEKDIDNLDQLLARA 201

Query: 171 -------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                   +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 202 GVPATTVVALQPISQK--PRATQLCIDTCIAR-NWRLSIQTHKYLSI 245


>gi|257463610|ref|ZP_05628001.1| radical SAM domain-containing protein [Fusobacterium sp. D12]
 gi|317061164|ref|ZP_07925649.1| radical SAM domain-containing protein [Fusobacterium sp. D12]
 gi|313686840|gb|EFS23675.1| radical SAM domain-containing protein [Fusobacterium sp. D12]
          Length = 222

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 22/146 (15%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y + E+F ++ GEG  AG++A+F RF  CNL            C +CDT +     T
Sbjct: 1   MPKYKVVEMFESINGEGKKAGQLALFIRFQFCNL-----------NCSYCDTKWA---NT 46

Query: 61  KGGRYNVDQLADLIEEQWITGEKEG-RYCVLTGGEPLLQVDV-PLIQALNK-RGFEIAVE 117
           K   +    L +++E    T  + G +   LTGGEPLLQ  +  L++A +K + FE+ +E
Sbjct: 47  KKSPFTWMSLEEILE----TARQRGIKNITLTGGEPLLQSHIFALLEAFSKEKMFEVEIE 102

Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKI 143
           TNG+I P +    I   P    D K+
Sbjct: 103 TNGSI-PLKKFQSIENPPSFTLDYKL 127


>gi|254228266|ref|ZP_04921695.1| Organic radical activating enzymes [Vibrio sp. Ex25]
 gi|262394169|ref|YP_003286023.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. Ex25]
 gi|151939339|gb|EDN58168.1| Organic radical activating enzymes [Vibrio sp. Ex25]
 gi|262337763|gb|ACY51558.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. Ex25]
          Length = 226

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 97/232 (41%), Gaps = 35/232 (15%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59
           LY + E+F T+QGEG   G  AVF R   C +   W   +Q   + +        + ++ 
Sbjct: 5   LYKLNEMFETIQGEGVFTGVPAVFVRLQECPVGCSWCDTKQTWYADENDQRQIGDILVKT 64

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
                + V    +++E+  + G    ++ V+TGGEP +    PL +A    G +  +ET+
Sbjct: 65  EDSPTWCVASAENIVEQYQLQGFN-AKHIVITGGEPCIYDLRPLTKAFEDMGCQCQIETS 123

Query: 120 GTIEPPQGID-WICVSPKAGCDLKI--------------------KGGQELKLVFPQVNV 158
           GT E     + W+ VSPK     K+                    K    L  +    NV
Sbjct: 124 GTSEVITSENTWVTVSPKVAMKGKLPVLNSALERANEIKHPVGTQKDIDHLDELLANANV 183

Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           + E  I       +LQP+        T L I  C     WRLSVQTHK++ I
Sbjct: 184 AVETVI-------ALQPISQK--PRATQLCIETCIAR-NWRLSVQTHKYLSI 225


>gi|315224929|ref|ZP_07866748.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Capnocytophaga ochracea F0287]
 gi|314945042|gb|EFS97072.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Capnocytophaga ochracea F0287]
          Length = 210

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 93/229 (40%), Gaps = 51/229 (22%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +L  + E F TLQGEG + G  A F R  GC++            C +CD      +  +
Sbjct: 14  ELLPLMEAFYTLQGEGFYKGTAAYFIRLGGCDV-----------GCHWCDVK----ESWQ 58

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
              + +  +  ++ E         +  ++TGGEPL+     L + L   G    +ET+G 
Sbjct: 59  AEAHPLVPVDTIVAE----ALAHSKTIIITGGEPLMWNLTLLTEKLRAGGARTHIETSGA 114

Query: 122 IEPPQGIDWICVSPKAGCDLKIK--------GGQELKLVFPQ-----------VNVSPEN 162
                  DWIC+SPK     KIK           ELK+V                VSPE 
Sbjct: 115 HPLSGTWDWICLSPK-----KIKRPVGDVLQKANELKMVIYNNHDFIFAEEIAAQVSPEC 169

Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            +        LQP      E    + + Y   +P+W+ S+Q HK++ IR
Sbjct: 170 LL-------YLQPEWSKRAEVMPKI-VDYVMAHPQWKASLQMHKYLDIR 210


>gi|257059021|ref|YP_003136909.1| radical activating enzyme [Cyanothece sp. PCC 8802]
 gi|256589187|gb|ACV00074.1| radical activating enzyme [Cyanothece sp. PCC 8802]
          Length = 205

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 87/221 (39%), Gaps = 41/221 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I E F ++QGEG   G  A F R +GC++            C +CD      +     
Sbjct: 11  YPIVETFHSIQGEGVWTGVNAFFIRLAGCDV-----------HCPWCDQK----ESWPVQ 55

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
            Y    L  L E             ++TGGEPL+    PL   L   G  + +ET+G+  
Sbjct: 56  PYPQQSLEALGEA---AKRANPAIVIITGGEPLMHNLDPLTAQLRGLGLRVHLETSGSHP 112

Query: 124 PPQGIDWICVSPKA-------------GCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
                DW+  SPK                 + I   ++L+    Q    P   I +    
Sbjct: 113 FSGQFDWVTFSPKPFKLPHESIYPQVDELKVVITSQEDLQWAEHQAAQVPLKTIKY---- 168

Query: 171 FSLQP-MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             LQP  + P   E+  L   Y   +P WR+S+Q HKF+G+
Sbjct: 169 --LQPEWNTP---ESQQLIFDYVLHHPDWRISLQVHKFLGV 204


>gi|148982371|ref|ZP_01816736.1| organic radical activating enzyme [Vibrionales bacterium SWAT-3]
 gi|145960507|gb|EDK25873.1| organic radical activating enzyme [Vibrionales bacterium SWAT-3]
          Length = 216

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 100/240 (41%), Gaps = 63/240 (26%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68
           +F T+QGEG   G  AVF R   C +            C +CDT     Q  +    +  
Sbjct: 1   MFETIQGEGVFTGVPAVFVRLQICPV-----------GCSWCDTK----QTWEALPEDET 45

Query: 69  QLADL------------IEEQWITGE--KEG---RYCVLTGGEPLLQVDVPLIQALNKRG 111
            L D+            I+ Q I  E  K+G   ++ V+TGGEP +   VPL +A  K G
Sbjct: 46  SLGDIMVKTEDSPTWSSIDAQGIVNEYIKQGYTAKHIVITGGEPCIYDLVPLTEAFEKHG 105

Query: 112 FEIAVETNGTIEPPQGID-WICVSPKAGCDLKI--------------------KGGQELK 150
               +ET+GT E     D W+ VSPK     K+                    K  ++L 
Sbjct: 106 CRCQIETSGTSEVKATPDTWVTVSPKVAMKAKLEILDSALQRANEIKHPVGTSKDIEQLD 165

Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +  +  VS +  I       +LQP+     +  T L I  C +   WRLS+QTHK++ I
Sbjct: 166 GLLERAEVSDDTVI-------ALQPISQK--DRATKLCIDTCIER-NWRLSIQTHKYLSI 215


>gi|330811384|ref|YP_004355846.1| Putative radical SAM-superfamily protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379492|gb|AEA70842.1| Putative radical SAM-superfamily protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 215

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 51/228 (22%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  L D++E+         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G    
Sbjct: 51  -LRTLDDILEQ---VASYRPRYVCVTGGEPLAQPNAIPLLKQLCDAGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQE--------LKLVFPQVNV-----SPENY------ 163
              +D   V P+     DLK  G +E        ++L+ P   V     S E+Y      
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEAHRNRYENIELLTPNDQVKFVICSREDYDWAVSK 160

Query: 164 -IGFDFERFSLQPMDGPFLEENT--NLAISYCFQNPKWRLSVQTHKFI 208
            I +  ++ + + +  P   + +  +LA      N   RL +Q HK++
Sbjct: 161 LIQYGLDQRAGEVLLSPSHHDLSARDLADWVVADNLPVRLQLQLHKYL 208


>gi|149191047|ref|ZP_01869307.1| organic radical activating enzyme [Vibrio shilonii AK1]
 gi|148835075|gb|EDL52052.1| organic radical activating enzyme [Vibrio shilonii AK1]
          Length = 226

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 100/236 (42%), Gaps = 45/236 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT----------- 52
           + I E+F T+QGEG   G  AVF R   CN+            C +CDT           
Sbjct: 6   FKINEMFETIQGEGMFTGVPAVFIRLQICNV-----------GCSWCDTKQTWDANNEDQ 54

Query: 53  ----DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
               + +  QG      +VD  A  I   + + +   ++ V+TGGEP       L +A  
Sbjct: 55  RSFGEIITKQGDSPTWSDVD--AAEIVAMYQSQQFNAKHIVITGGEPCEYDLTALCEAFE 112

Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLK-------IKGGQELKL-VFPQVNVS 159
             G    +ET+GT E     + W+ VSPK     K       ++   E+K  V  Q NV 
Sbjct: 113 AIGCRCQIETSGTSEIRVTPVTWVTVSPKVAMKGKLPVLSSSLERADEIKHPVATQKNVD 172

Query: 160 PENYI--GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             + +  G + +     +LQP+        T L I  C Q   WRLSVQTHK++ I
Sbjct: 173 QLDELLQGVELKSDVVIALQPISQK--PRATELCIETCIQR-NWRLSVQTHKYLSI 225


>gi|325107837|ref|YP_004268905.1| radical SAM protein [Planctomyces brasiliensis DSM 5305]
 gi|324968105|gb|ADY58883.1| Radical SAM domain protein [Planctomyces brasiliensis DSM 5305]
          Length = 241

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 19/132 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF ++QGEG + G  +VF R SGCNL           +C FCDT +      +G   
Sbjct: 18  ISEIFASIQGEGCYTGTPSVFVRTSGCNL-----------RCHFCDTPYAS-WNPEGETL 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124
           ++  +   + E W        + VLTGGEP++  D+  L  AL ++   I +ET GT+  
Sbjct: 66  SIADIVARVNEWW------HPHVVLTGGEPMMVRDLAELTSALKRQDRFITIETAGTVYQ 119

Query: 125 PQGIDWICVSPK 136
               D + +SPK
Sbjct: 120 DIEADLMSISPK 131


>gi|262171605|ref|ZP_06039283.1| queuosine Biosynthesis QueE Radical SAM [Vibrio mimicus MB-451]
 gi|261892681|gb|EEY38667.1| queuosine Biosynthesis QueE Radical SAM [Vibrio mimicus MB-451]
          Length = 222

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 95/227 (41%), Gaps = 25/227 (11%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59
           +Y I E+F T+QGEG   G  AVF R  GC +   W   +Q   + +        + ++ 
Sbjct: 1   MYRINEMFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLESDQTSFPQILLKT 60

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           +    +      D+IE     G  + ++ V+TGGEP +     L QA    G +  +ET+
Sbjct: 61  SDAPTWCQASAQDVIERYRAQG-YQAKHIVITGGEPCIYDLTELTQAFEAIGCQCQIETS 119

Query: 120 GTIEP-PQGIDWICVSPKAG-------CDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
           GT E       W+ VSPK          D  ++   E+K   P       + +     R 
Sbjct: 120 GTYEILATPTTWVTVSPKVAMKGKLPILDSALQRANEIK--HPVATEKDIDNLDELLVRA 177

Query: 172 S--------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           S        LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 178 SVDAKTVIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 221


>gi|149173902|ref|ZP_01852531.1| hypothetical protein PM8797T_05675 [Planctomyces maris DSM 8797]
 gi|148847432|gb|EDL61766.1| hypothetical protein PM8797T_05675 [Planctomyces maris DSM 8797]
          Length = 226

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 19/143 (13%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF + QGEG   G  ++F R SGCNL           +C FCDT +      +G + 
Sbjct: 3   ISEIFHSPQGEGKWIGVPSIFIRTSGCNL-----------RCWFCDTPYTS-WNPEGEKM 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP 124
           +VDQ+ + I       + +  + V+TGGEP+L  ++  L Q L+  G  I +ET GTI  
Sbjct: 51  SVDQILEHI------AQYDCEHVVVTGGEPMLSHEIESLTQRLHADGKIITIETAGTILS 104

Query: 125 PQGIDWICVSPKAGCDLKIKGGQ 147
               D + +SPK    + +   +
Sbjct: 105 DVHADLMSISPKLSNSIPVDNPE 127


>gi|261210910|ref|ZP_05925200.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. RC341]
 gi|260839885|gb|EEX66485.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. RC341]
          Length = 222

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 96/227 (42%), Gaps = 25/227 (11%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59
           +Y I E+F T+QGEG   G  AVF R  GC +   W   +Q   S          + ++ 
Sbjct: 1   MYRINEMFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWESLDADQTSFSQILLKT 60

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           +    +      D++ +++ T   + ++ V+TGGEP +     L QA    G    +ET+
Sbjct: 61  SDAPTWCHASAQDVV-QRYQTQGYQAKHIVITGGEPCIYDLTELTQAFESIGCHCQIETS 119

Query: 120 GTIE-PPQGIDWICVSPKAG-------CDLKIKGGQELKLVFPQVNVSPENYIGFDFER- 170
           GT E     + W+ VSPK          D  ++   E+K   P       + +     R 
Sbjct: 120 GTYEVRATPLTWVTVSPKVAMKGKLPILDSALQRANEIK--HPVATEKDIDNLDELLVRA 177

Query: 171 -------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                   +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 178 KVTEKTVVALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 221


>gi|218245972|ref|YP_002371343.1| hypothetical protein PCC8801_1116 [Cyanothece sp. PCC 8801]
 gi|218166450|gb|ACK65187.1| conserved hypothetical protein [Cyanothece sp. PCC 8801]
          Length = 205

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 87/221 (39%), Gaps = 41/221 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I E F ++QGEG   G  A F R +GC++            C +CD      +     
Sbjct: 11  YPIVETFHSIQGEGVWMGVNAFFIRLAGCDV-----------HCPWCDQK----ESWPVQ 55

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
            Y    L  L E             ++TGGEPL+    PL   L   G  + +ET+G+  
Sbjct: 56  PYPQQSLEALGEA---AKRANPAIVIITGGEPLMHNLDPLTAQLRGLGLRVHLETSGSHP 112

Query: 124 PPQGIDWICVSPKA-------------GCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
                DW+  SPK                 + I   ++L+    Q    P   I +    
Sbjct: 113 FSGQFDWVTFSPKPFKLPHESIYPQVDELKVVITSQEDLQWAEHQAAQVPLKTIKY---- 168

Query: 171 FSLQP-MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             LQP  + P   E+  L   Y   +P WR+S+Q HKF+G+
Sbjct: 169 --LQPEWNTP---ESQQLIFDYVLHHPDWRISLQVHKFLGV 204


>gi|156937024|ref|YP_001434820.1| radical SAM domain-containing protein [Ignicoccus hospitalis
           KIN4/I]
 gi|156566008|gb|ABU81413.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 218

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 27/150 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  + + E FL++QGEG   G  A F R + CNL           +C +CDT +     +
Sbjct: 1   MSEFEVIEEFLSIQGEGSLVGTPAYFVRLARCNL-----------RCPWCDTKY---SWS 46

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDV-PLIQALNKRGFE--IAV 116
            G +  V ++A+   E  +         VLTGGEPLL Q+++   ++ L ++GF+  + +
Sbjct: 47  PGLKVPVSEVAERALESGVG------LIVLTGGEPLLWQLEIRSFLKELEEKGFKGLVQI 100

Query: 117 ETNGTIEPP--QGID-WICVSPKAGCDLKI 143
           ETNGTI P   +G + WI VSPK  CD  I
Sbjct: 101 ETNGTIYPSALEGHEIWITVSPKVTCDYYI 130


>gi|328953829|ref|YP_004371163.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328454153|gb|AEB09982.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 213

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 66/123 (53%), Gaps = 22/123 (17%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           E F+++ GE   AG    F R SGCNL           +CR+CDT +   +G +      
Sbjct: 7   ETFISIMGEASFAGLPGFFIRLSGCNL-----------RCRYCDTTYAYAEGVE------ 49

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ 126
             LA L+ E   +G    R  ++TGGEPLLQ + + L+ AL +RGF + +ETNG+  P +
Sbjct: 50  RSLASLLGEAGASGY---RLVLVTGGEPLLQEECLVLLSALVERGFTVLLETNGS-RPLE 105

Query: 127 GID 129
            +D
Sbjct: 106 AVD 108


>gi|209809367|ref|YP_002264905.1| hypothetical protein VSAL_II0580 [Aliivibrio salmonicida LFI1238]
 gi|208010929|emb|CAQ81334.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 226

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 98/235 (41%), Gaps = 41/235 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD-TDFVGI---- 57
           L+ I E+F T+QGEG   G  ++F R  GC +       + +      D TD   I    
Sbjct: 5   LFKINELFETIQGEGTFTGVPSIFLRLQGCPVGCSWCDTKQTWDVELSDKTDLATILAKT 64

Query: 58  -QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
                       Q+ D++ +Q  T     ++ V+TGGEP +     L + L K G+   +
Sbjct: 65  EDAPSWTELTALQIIDMLVQQGYT----AKHMVITGGEPCMYDLTSLTEELEKNGYRCQI 120

Query: 117 ETNGTIEPPQGID-WICVSPKAGCDLKI--------------------KGGQELKLVFPQ 155
           ET+GT       + W+ VSPK     K+                    K  ++L+ +   
Sbjct: 121 ETSGTYPILTSNNTWVTVSPKINMKGKLPVLDEALMRANEIKHPVGTTKDIEQLEALLDG 180

Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           VN+  +  I       +LQP+        T L I  C +   WRLS+QTHK++ I
Sbjct: 181 VNLLTDVTI-------ALQPISQK--PRATELCIETCIKK-NWRLSIQTHKYLAI 225


>gi|262165604|ref|ZP_06033341.1| queuosine Biosynthesis QueE Radical SAM [Vibrio mimicus VM223]
 gi|262025320|gb|EEY43988.1| queuosine Biosynthesis QueE Radical SAM [Vibrio mimicus VM223]
          Length = 222

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 95/227 (41%), Gaps = 25/227 (11%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59
           +Y I E+F T+QGEG   G  AVF R  GC +   W   +Q   + +        + ++ 
Sbjct: 1   MYRINEMFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLESDQTSFPQILLKT 60

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           +    +      D+IE     G  + ++ V+TGGEP +     L QA    G +  +ET+
Sbjct: 61  SDAPTWCQASAQDVIERYRAQG-YQAKHIVITGGEPCIYDLTELTQAFAAIGCQCQIETS 119

Query: 120 GTIEP-PQGIDWICVSPKAG-------CDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
           GT E       W+ VSPK          D  ++   E+K   P       + +     R 
Sbjct: 120 GTYEILATPTTWVTVSPKVAMKGKLPILDSALQRANEIK--HPVATEKDIDNLDELLVRA 177

Query: 172 S--------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           S        LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 178 SVDAKTVIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 221


>gi|77460620|ref|YP_350127.1| radical SAM family protein [Pseudomonas fluorescens Pf0-1]
 gi|77384623|gb|ABA76136.1| putative radical SAM-superfamily protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 215

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 105/228 (46%), Gaps = 51/228 (22%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  L D++E+  + G +  RY  +TGGEPL Q + +PL++ L   G+E+++ET+G    
Sbjct: 51  -IRTLDDILEQ--VAGFRP-RYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQE--------LKLVFPQVNV-----SPENY------ 163
              +D   V P+     DLK    +E        + L+ P   V     S E+Y      
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPDSKEAHRNRYENIDLLTPNDQVKFVICSREDYDWAVSK 160

Query: 164 -IGFDFERFSLQPMDGPFLEE--NTNLAISYCFQNPKWRLSVQTHKFI 208
            I +  ER + + +  P   +    +LA      N   RL +Q HK++
Sbjct: 161 LIQYGLERRAGEVLFSPSHHDLNARDLADWVVADNLPVRLQLQLHKYL 208


>gi|310825117|ref|YP_003957475.1| radical sam domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309398189|gb|ADO75648.1| Radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 230

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           +KEI+L++QGE  HAG +  F R +GC+L           +C +CD++F    GT+    
Sbjct: 21  VKEIYLSVQGESSHAGLLCAFVRLTGCHL-----------RCTYCDSEFAFRGGTRMPNA 69

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
            V +    +    +          +TGGEPLLQ  V PL++AL   G  + +ET+G I+
Sbjct: 70  QVVEQVKALRTPMVE---------ITGGEPLLQPGVYPLMEALLAEGLTVLLETSGAID 119


>gi|154149121|ref|YP_001405929.1| radical SAM domain-containing protein [Campylobacter hominis ATCC
           BAA-381]
 gi|153805130|gb|ABS52137.1| radical SAM domain protein [Campylobacter hominis ATCC BAA-381]
          Length = 247

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 16/132 (12%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-----CRFCDTDFVGI 57
           + S+ E F ++QGEG  AGR+AVF RF+GCNL        L +       R CDT    I
Sbjct: 1   MLSLVESFASIQGEGKFAGRLAVFFRFAGCNLNCAGFNCELKSPKTGEILRGCDT----I 56

Query: 58  QGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL----IQALNKR 110
           +  K   ++ +++   + L+++     +      V+TGGEPLL    PL    I  + KR
Sbjct: 57  RAVKTAHFDYEKISTVSQLLDKIGTNFKNSLPIIVITGGEPLLNYANPLFYEFIDEILKR 116

Query: 111 GFEIAVETNGTI 122
            FE+  ETNGTI
Sbjct: 117 NFEVHFETNGTI 128


>gi|323491404|ref|ZP_08096589.1| organic radical activating enzyme [Vibrio brasiliensis LMG 20546]
 gi|323314530|gb|EGA67609.1| organic radical activating enzyme [Vibrio brasiliensis LMG 20546]
          Length = 222

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 21/225 (9%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59
           +Y I E+F T+QGEG   G  +VF R   C +   W   +Q   +     C  D +  + 
Sbjct: 1   MYKINEMFQTIQGEGVFTGVPSVFVRLQECPVGCAWCDTKQTWDATPQDECSLDEILAKK 60

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
                +      D++ E    G    R+ V+TGGEP +    PL  A    G +  +ET+
Sbjct: 61  EDSPAWCSVSAQDIVNEYQKQG-YTARHIVITGGEPCIYDLRPLTAAFEAIGCQCQIETS 119

Query: 120 GTIEPPQGID-WICVSPKAG-------CDLKIKGGQELKL-VFPQVNVSPENYIGFDFE- 169
           GT +     + W+ VSPK          D  +    E+K  V  Q ++   + +    + 
Sbjct: 120 GTYQVDASENTWVTVSPKVAMKGKLPVIDSALLRANEIKHPVATQKDIDQLDELLTRAQV 179

Query: 170 ----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                 +LQP+        T L I  C +   WRLS+QTHK++ I
Sbjct: 180 PQSTTIALQPISQK--PRATQLCIDTCVER-NWRLSIQTHKYLSI 221


>gi|51948767|gb|AAU14304.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948815|gb|AAU14328.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948877|gb|AAU14359.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948903|gb|AAU14372.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948907|gb|AAU14374.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
          Length = 129

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            ++ L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G    
Sbjct: 51  -INTLDDIMGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
              +D   V P+     DLK  G +E+
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127


>gi|70607340|ref|YP_256210.1| hypothetical protein Saci_1604 [Sulfolobus acidocaldarius DSM 639]
 gi|68567988|gb|AAY80917.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
          Length = 211

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 102/229 (44%), Gaps = 41/229 (17%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF ++QGEG   G  + F R +GC++           +C +CDT +         
Sbjct: 3   YWIIEIFTSIQGEGEVIGTPSNFVRLAGCHM-----------RCIWCDTKY------SWH 45

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           +Y+  +L+  I+E         +   +TGGEPLLQ  +PL + L K    I VET+GTI+
Sbjct: 46  KYDGKELS--IQEIISKINVSVKTTTITGGEPLLQDIIPLAEELKKLEQRIVVETSGTIK 103

Query: 124 PPQG----IDWICVSPK---AGCDLKIK-GGQELKLVFPQVNVSPENYI----------G 165
           P Q     +D   VSPK   AG  LK      +    +  V V+P+  I           
Sbjct: 104 PNQKLMELVDVFSVSPKLSNAGYRLKYNFKDDDWATYYKFVIVNPKTDIPEVIKFVEENR 163

Query: 166 FDFERFSLQPMDG---PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            D  +  LQP DG    ++     LA S      ++R+  Q H+ I  R
Sbjct: 164 IDHRKVLLQP-DGRRNDYVNALKELADSVMEFGVQFRVLPQLHRIISYR 211


>gi|153825305|ref|ZP_01977972.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|183179363|ref|ZP_02957574.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|149741133|gb|EDM55192.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|183012774|gb|EDT88074.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
          Length = 245

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 95/232 (40%), Gaps = 35/232 (15%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59
           LY I E+F T+QGEG   G  AVF R  GC +   W   +Q   +          + ++ 
Sbjct: 24  LYRINEMFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLDSDQTSFSQILLKT 83

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           +    +      ++++     G  + ++ V+TGGEP +     L QA    G    +ET+
Sbjct: 84  SDAPTWCQASAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQIETS 142

Query: 120 GTIEPPQGID-WICVSPKAG-------CDLKIKGGQELKL-------------VFPQVNV 158
           GT E     + W+ VSPK          D  ++   E+K              +  +  V
Sbjct: 143 GTYEVRATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLARAQV 202

Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           S +  I        LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 203 SAQTAIA-------LQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244


>gi|331016448|gb|EGH96504.1| radical SAM domain protein [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 215

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  L D+I +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G    
Sbjct: 51  -IQTLDDIIGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
              +D   V P+     DLK  G +E+
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127


>gi|146295178|ref|YP_001178949.1| radical SAM domain-containing protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145408754|gb|ABP65758.1| Radical SAM domain protein [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 217

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 19/121 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + E F++++GEG  +G  A+F RF+GCNL            C +CDT +     T+  
Sbjct: 6   FKVVEKFVSIEGEGIRSGFPAIFLRFAGCNL-----------NCSYCDTRY----ATQNP 50

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
            Y    L  ++E     G K      LTGGEPL+Q  +  LI +L K GFE+ +ETNG++
Sbjct: 51  DYEEITLDQILEYVNSIGFKR---VTLTGGEPLIQPHIHDLIDSLIKEGFEVNIETNGSV 107

Query: 123 E 123
           +
Sbjct: 108 D 108


>gi|300869302|ref|ZP_07113893.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300332679|emb|CBN59091.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 210

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 105/223 (47%), Gaps = 41/223 (18%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I E F  T+QGEG  +G +  F R +GC              C +CDT +     ++GG+
Sbjct: 12  IHETFQSTVQGEGYWSGTLVDFIRLAGC-----------PVHCPWCDTGY-----SEGGK 55

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT-I 122
              +    ++E   +  E +    V++GGEP +  ++PL +++L + G ++++ET+G+  
Sbjct: 56  DLPNVQRSIVE---LLTELKSPRVVISGGEPFIHKNLPLLVESLLEVGKQVSIETSGSHW 112

Query: 123 EPPQGIDWICVSPKAGCDLKI-------KGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
           +   G  WI +SPK   + K            E+KLV     +S    + F  +     P
Sbjct: 113 QEVAGETWITLSPKEHVNPKYPVQEKFWSRANEIKLV-----ISTGEEVNFYRDGLVSNP 167

Query: 176 MDGPFLEENTN-------LAISYCFQNPKWRLSVQTHKFIGIR 211
               FL+   +       + +    QNP +RLS+QTHK IG++
Sbjct: 168 NIPVFLQPEWSDRFRAIPIILQLLQQNPGYRLSLQTHKLIGVQ 210


>gi|284048974|ref|YP_003399313.1| Radical SAM domain protein [Acidaminococcus fermentans DSM 20731]
 gi|283953195|gb|ADB47998.1| Radical SAM domain protein [Acidaminococcus fermentans DSM 20731]
          Length = 218

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 31/151 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + E+F +++GEG   G +AVF RF+GCNL           +C +CDT +         
Sbjct: 6   FPVVELFDSIEGEGKRTGAMAVFVRFAGCNL-----------RCSYCDTGY--------A 46

Query: 64  RYNVDQLADLIEEQWITGEKEGRY----CVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
               D    L EE  +   +  RY      LTGGEPLLQ    L + L++ G+E+ +ETN
Sbjct: 47  LEPADAREHLTEEDLMGRIR--RYPWKKVTLTGGEPLLQPLDSLCRTLSREGYEVNIETN 104

Query: 120 GTI----EPPQGIDWI--CVSPKAGCDLKIK 144
           G +    E P+G+ +     SP +G   +++
Sbjct: 105 GAVPLLEERPRGLFYTMDVKSPSSGMRGRMR 135


>gi|51948881|gb|AAU14361.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
          Length = 129

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            V  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G    
Sbjct: 51  -VQTLDDIMGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
              +D   V P+     DLK  G +E+
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127


>gi|325969441|ref|YP_004245633.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28]
 gi|323708644|gb|ADY02131.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 218

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 94/194 (48%), Gaps = 36/194 (18%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E+F + QGEG HAG  AVF R + CNL           +C +CDT +  + G   G  
Sbjct: 3   VVEVFRSWQGEGPHAGEEAVFLRLARCNL-----------RCVWCDTKYSWLGGVSMGID 51

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTIE 123
            V     LIE     G  E ++ V+TGGEPLL  +    L+  +  RG+ + VETNGT+ 
Sbjct: 52  AV--FRRLIE----VGGDEIKHLVITGGEPLLWWRELRQLLIIVKGRGWFVEVETNGTLR 105

Query: 124 PPQGIDWI---CVSPK---AGCDLKIKGGQEL--------KLVFPQVNVSPE--NYIGFD 167
           P + +D++    VS K   +G  L+ +  +          K VF  V   PE  N + + 
Sbjct: 106 PGELLDYVDEFNVSSKLSNSGILLRHRVNESALRDFVSSGKAVFKFVVDKPEDVNEVLWF 165

Query: 168 FERFSLQPMDGPFL 181
            ERF + P D  +L
Sbjct: 166 IERFRM-PRDRIYL 178


>gi|305663006|ref|YP_003859294.1| coenzyme PQQ synthesis protein, conjectural [Ignisphaera aggregans
           DSM 17230]
 gi|304377575|gb|ADM27414.1| coenzyme PQQ synthesis protein, conjectural [Ignisphaera aggregans
           DSM 17230]
          Length = 219

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 96/214 (44%), Gaps = 42/214 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF ++QGEG   GR AVF R  GCNL   +           CDT +     + G   
Sbjct: 8   VSEIFYSIQGEGPFIGRPAVFIRLQGCNLRCTKNSVGWD-----CDTQY-AWDSSGGMEI 61

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
           ++D++ D++ +       + R+ V+TGGEP++Q    + LI+ L+  G+ I +ETNGTI 
Sbjct: 62  SIDRVVDIVRQY------QCRHIVITGGEPMIQQREVIELIKRLD--GYAIEIETNGTI- 112

Query: 124 PPQGIDW------ICVSPK------------AGCDLKIKGGQELKLVFPQVNVSPENYIG 165
            P   D+      + VSPK            A C LK     E  LVF    V      G
Sbjct: 113 -PLDPDFPVEKVRLNVSPKPHAPIRPEYIRYASC-LKFVVASEKDLVFVDSFV---KIYG 167

Query: 166 FDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199
            +  R  L P      E N N  I  C++  K R
Sbjct: 168 VEPSRIWLMPASRNVDEHNRN--IRLCWEYAKLR 199


>gi|94676807|ref|YP_588675.1| hypothetical protein BCI_0220 [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219957|gb|ABF14116.1| conserved hypothetical protein [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 223

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 100/243 (41%), Gaps = 59/243 (24%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-------- 55
           Y I  I  TLQGEG  +G  A+F R  GC              C +CDT +         
Sbjct: 3   YPINSICQTLQGEGYFSGIPAIFIRLQGC-----------MVGCNWCDTKYTWHKNKIEQ 51

Query: 56  GIQG---TKGGRYNV-------DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
           GI      K    +V       D LA ++++ WI      ++ V+TGGEP +   +PL  
Sbjct: 52  GIAKDIMLKKANSSVWSNLSEEDILALIVQQSWI-----AKHVVITGGEPCMYDLLPLTY 106

Query: 106 ALNKRGFEIAVETNGTIEPPQGID-----WICVSPKAG--CDLKIKG-----GQELKLVF 153
            L +  F   +ET+GT    Q I      W+ VSPK     D++I         E+K V 
Sbjct: 107 LLEQYKFSCQIETSGT----QSIKCTSNTWVTVSPKINKHYDVQILAQALSRSNEIKHVV 162

Query: 154 PQ---VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
            +   +    E  +     +     LQP+    L   T L I  C     WRLS+Q HK+
Sbjct: 163 SRQRDIKYLDELLLTLKDSKQRVICLQPLSQKKLA--TKLCIDTCIMR-NWRLSMQIHKY 219

Query: 208 IGI 210
           + I
Sbjct: 220 LNI 222


>gi|153212696|ref|ZP_01948353.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|124116346|gb|EAY35166.1| conserved hypothetical protein [Vibrio cholerae 1587]
          Length = 245

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59
           LY I E+F T+QGEG   G  AVF R  GC +   W   +Q   +          + ++ 
Sbjct: 24  LYRINEMFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLDSDQTSFSQILLKT 83

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           +    +      ++++     G  + ++ V+TGGEP +     L QA    G    +ET+
Sbjct: 84  SDAPTWCQASAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQIETS 142

Query: 120 GTIEPPQGID-WICVSPKAG-------CDLKIKGGQELKL-------------VFPQVNV 158
           GT E     + W+ VSPK          D  ++   E+K              +  +  V
Sbjct: 143 GTYEVYATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLARAQV 202

Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           S +  I       +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 203 SAQTAI-------ALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244


>gi|312792432|ref|YP_004025355.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179572|gb|ADQ39742.1| Radical SAM domain protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 225

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 19/120 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           +++ E F++++GEG  +G  AVF RF+GCNL            C +CDT++   +  K  
Sbjct: 14  FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------SCSWCDTNY-ATENPKYE 61

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           + ++D L   I    I      +   LTGGEPL+Q  +  LI  L   GFE+ +ETNG++
Sbjct: 62  QIDIDTLLSFIASTGI------KRVTLTGGEPLIQPYIYILIDRLIYEGFEVNIETNGSV 115


>gi|261417330|ref|YP_003251013.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373786|gb|ACX76531.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302325710|gb|ADL24911.1| radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 224

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 24/146 (16%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           EIF +++GEG   G+ AVF R  GCNL           +C +CD+ +  ++G    + +V
Sbjct: 5   EIFKSIEGEGIRMGQAAVFVRLHGCNL-----------RCSYCDSMY-AVEGPDFKQMSV 52

Query: 68  DQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI--- 122
            ++   +E   +   + G  CV LTGGEPL+   V  L+ A +  GFE+ +ETNGT+   
Sbjct: 53  GEVLAAVE---MYRNESGVKCVTLTGGEPLIHEGVGELLTAFSDAGFEVNIETNGTVPCK 109

Query: 123 -EPP---QGIDWICVSPKAGCDLKIK 144
            + P     +DW C S      +K++
Sbjct: 110 WQLPGLFYTMDWKCKSSGMSARMKME 135


>gi|121587998|ref|ZP_01677750.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|153828785|ref|ZP_01981452.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|229515737|ref|ZP_04405196.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae TMA 21]
 gi|229521471|ref|ZP_04410890.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae TM
           11079-80]
 gi|229529559|ref|ZP_04418949.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae 12129(1)]
 gi|121547739|gb|EAX57830.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|148875738|gb|EDL73873.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|229333333|gb|EEN98819.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae 12129(1)]
 gi|229341569|gb|EEO06572.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae TM
           11079-80]
 gi|229347506|gb|EEO12466.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae TMA 21]
          Length = 245

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 95/232 (40%), Gaps = 35/232 (15%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59
           LY I E+F T+QGEG   G  AVF R  GC +   W   +Q   +          + ++ 
Sbjct: 24  LYRINEMFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLDSDQTSFSQILLKT 83

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           +    +      ++++     G  + ++ V+TGGEP +     L QA    G    +ET+
Sbjct: 84  SDAPTWCQASAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQIETS 142

Query: 120 GTIEPPQGID-WICVSPKAG-------CDLKIKGGQELKL-------------VFPQVNV 158
           GT E     + W+ VSPK          D  ++   E+K              +  +  V
Sbjct: 143 GTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLARAQV 202

Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           S +  I        LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 203 SAQTAIA-------LQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244


>gi|268609642|ref|ZP_06143369.1| MoaA family Fe-S oxidoreductase [Ruminococcus flavefaciens FD-1]
          Length = 225

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 16/124 (12%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  + + E F+++ GEG  AG +A+F RF+GCNL           +C +CDT +   +  
Sbjct: 1   MGTFRLAEHFVSINGEGRLAGELALFLRFTGCNL-----------RCDWCDTMWANEKDA 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEG-RYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
                N   LA + ++ +   E+ G R   LTGGEPLLQ D+P L   +   G  I +ET
Sbjct: 50  PYTLMNTSSLAKIAQQAY---EEYGVRNVTLTGGEPLLQEDLPELCGRIAGLGLNIEIET 106

Query: 119 NGTI 122
           NG +
Sbjct: 107 NGAV 110


>gi|237800229|ref|ZP_04588690.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|237806417|ref|ZP_04593121.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023086|gb|EGI03143.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027530|gb|EGI07585.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 215

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 29/148 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G    
Sbjct: 51  -IQTLDDIVGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150
              +D   V P+     DLK  G +E+ 
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEVS 128


>gi|51948725|gb|AAU14283.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948727|gb|AAU14284.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948729|gb|AAU14285.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948731|gb|AAU14286.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948735|gb|AAU14288.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948777|gb|AAU14309.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948779|gb|AAU14310.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948781|gb|AAU14311.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948785|gb|AAU14313.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948787|gb|AAU14314.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948789|gb|AAU14315.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948803|gb|AAU14322.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948807|gb|AAU14324.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948809|gb|AAU14325.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948821|gb|AAU14331.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948823|gb|AAU14332.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948827|gb|AAU14334.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948843|gb|AAU14342.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948849|gb|AAU14345.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948869|gb|AAU14355.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948879|gb|AAU14360.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948885|gb|AAU14363.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948901|gb|AAU14371.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948909|gb|AAU14375.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
          Length = 129

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G    
Sbjct: 51  -IHTLDDIMGQ---VATYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
              +D   V P+     DLK  G +E+
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127


>gi|28871114|ref|NP_793733.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28854364|gb|AAO57428.1| radical SAM domain protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 215

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G    
Sbjct: 51  -IQTLDDIVGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
              +D   V P+     DLK  G +E+
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127


>gi|119493534|ref|ZP_01624200.1| hypothetical protein L8106_18202 [Lyngbya sp. PCC 8106]
 gi|119452651|gb|EAW33832.1| hypothetical protein L8106_18202 [Lyngbya sp. PCC 8106]
          Length = 204

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 96/227 (42%), Gaps = 41/227 (18%)

Query: 1   MKLYSIKEIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M   +I E F  T+QGEG  AG    F R +GC             QC +CDT +    G
Sbjct: 1   MNEIAIHETFQNTIQGEGFWAGTPVDFIRLAGC-----------PVQCHYCDTGYAN--G 47

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
            +G   NV     LI       E      V++GGEP +   +P L++ +      + +ET
Sbjct: 48  GEGLPRNVRSFEALI------AELRSPKVVISGGEPFIYPQLPDLVKCIEATNRTVFIET 101

Query: 119 NGTI-EPPQGIDWICVSPKAG-------CDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
           +G   +P     WI +SPK          D   +   E+KLV     +   + + +  + 
Sbjct: 102 SGCFWQPISSSVWITLSPKEHLNPHYPVVDQMWERASEIKLV-----IETGSELKYYDQY 156

Query: 171 FSLQPMDGPFLEE-------NTNLAISYCFQNPKWRLSVQTHKFIGI 210
            SL+P    FL+           L +    Q P +RLS+Q HK++G+
Sbjct: 157 LSLKPQIPVFLQPEWTQRDYTLPLVLELLQQYPDYRLSLQLHKYVGV 203


>gi|51948733|gb|AAU14287.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948737|gb|AAU14289.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948765|gb|AAU14303.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948771|gb|AAU14306.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948783|gb|AAU14312.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948793|gb|AAU14317.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948795|gb|AAU14318.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948797|gb|AAU14319.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948799|gb|AAU14320.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948801|gb|AAU14321.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948811|gb|AAU14326.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948813|gb|AAU14327.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948817|gb|AAU14329.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948819|gb|AAU14330.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948825|gb|AAU14333.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948829|gb|AAU14335.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948835|gb|AAU14338.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948837|gb|AAU14339.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948841|gb|AAU14341.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948857|gb|AAU14349.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948859|gb|AAU14350.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948861|gb|AAU14351.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948863|gb|AAU14352.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948865|gb|AAU14353.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948867|gb|AAU14354.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948873|gb|AAU14357.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948887|gb|AAU14364.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948889|gb|AAU14365.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948891|gb|AAU14366.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948893|gb|AAU14367.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948895|gb|AAU14368.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948897|gb|AAU14369.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948905|gb|AAU14373.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
          Length = 129

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G    
Sbjct: 51  -IHTLDDIMGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
              +D   V P+     DLK  G +E+
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127


>gi|330872644|gb|EGH06793.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330964833|gb|EGH65093.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 215

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G    
Sbjct: 51  -IQTLDDIVGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
              +D   V P+     DLK  G +E+
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127


>gi|51948739|gb|AAU14290.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948741|gb|AAU14291.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948743|gb|AAU14292.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948745|gb|AAU14293.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948747|gb|AAU14294.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948749|gb|AAU14295.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948751|gb|AAU14296.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948753|gb|AAU14297.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948755|gb|AAU14298.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948757|gb|AAU14299.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948759|gb|AAU14300.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948761|gb|AAU14301.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948769|gb|AAU14305.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948773|gb|AAU14307.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948775|gb|AAU14308.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948791|gb|AAU14316.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948831|gb|AAU14336.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948833|gb|AAU14337.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948839|gb|AAU14340.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948845|gb|AAU14343.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948847|gb|AAU14344.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948851|gb|AAU14346.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948853|gb|AAU14347.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948855|gb|AAU14348.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948871|gb|AAU14356.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948875|gb|AAU14358.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948883|gb|AAU14362.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
          Length = 129

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G    
Sbjct: 51  -IQTLDDIMGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
              +D   V P+     DLK  G +E+
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127


>gi|163815376|ref|ZP_02206751.1| hypothetical protein COPEUT_01541 [Coprococcus eutactus ATCC 27759]
 gi|158449350|gb|EDP26345.1| hypothetical protein COPEUT_01541 [Coprococcus eutactus ATCC 27759]
          Length = 222

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 19/125 (15%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y + E F+++ GE   AG +AVF RF+GCNL            C +CDT +    G 
Sbjct: 1   MSTYRVVERFISINGEAARAGELAVFIRFAGCNL-----------NCGYCDTKWANEPGV 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118
                  D+L D +         E +   LTGGEPL+Q D+   L+    +    + +ET
Sbjct: 50  DYQELTEDELVDYVRRT------EVKNVTLTGGEPLIQKDIDKLLLAFALEDDIRVEIET 103

Query: 119 NGTIE 123
           NG+++
Sbjct: 104 NGSVD 108


>gi|149910796|ref|ZP_01899430.1| radical activating enzyme [Moritella sp. PE36]
 gi|149806130|gb|EDM66110.1| radical activating enzyme [Moritella sp. PE36]
          Length = 222

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 104/237 (43%), Gaps = 48/237 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------F 54
           Y + EIF T+QGEG   G   +F R  GC++            C +CDT           
Sbjct: 3   YPVNEIFETVQGEGHFTGYPVIFIRLQGCDV-----------GCSWCDTKQTWTVDPEMQ 51

Query: 55  VGIQGTKGGRYNVDQLADLIEEQWITG-EKEG---RYCVLTGGEPLLQVDVPLIQALNKR 110
           V  Q       +    A+   +++IT  +K G   ++ V++GGEP     V L   L + 
Sbjct: 52  VSQQTVNKACDDKPHWANFTAQEFITMIQKNGFVAKHIVISGGEPCQYDLVELTSELEQA 111

Query: 111 GFEIAVETNGTIEP-PQGIDWICVSPKAGCDLKIKG-----------GQELKLVFP-QVN 157
           G+   +ET+GT E       W+ VSPK    +++KG             E+K V   + +
Sbjct: 112 GYFCQIETSGTSEVRATDSTWVTVSPK----IQMKGQLPVLQSALRRANEIKHVIAMEKH 167

Query: 158 VSPENYIGFDFER----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +   + +  D +       LQP+     +  T+LAI  C +   W+LSVQ HK+I I
Sbjct: 168 IEELDALIADIDTSDKIMCLQPISQQ--KRATDLAIKLCIER-NWKLSVQMHKYIFI 221


>gi|328468975|gb|EGF39935.1| hypothetical protein VP10329_15155 [Vibrio parahaemolyticus 10329]
          Length = 226

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 91/242 (37%), Gaps = 55/242 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           LY + E+F T+QGEG   G  AVF R   C +            C +CDT        K 
Sbjct: 5   LYKLNEMFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWDAEEKD 53

Query: 63  GRYNVDQLADLIEE-QWITGEKE------------GRYCVLTGGEPLLQVDVPLIQALNK 109
            R   D L    +   W T   E             ++ V+TGGEP +    PL +A   
Sbjct: 54  QRPIGDILVKTEDSPTWCTASAEDIVEQYKQQGFNAKHIVITGGEPCIYDLRPLSKAFED 113

Query: 110 RGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKI--------------------KGGQE 148
            G +  +ET+GT E       W+ VSPK     K+                    K    
Sbjct: 114 MGCQCQIETSGTSEVVTSEKTWVTVSPKVAMKGKLPVLKSALERANEIKHPVGTQKDIDH 173

Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           L  +    ++  E  I       +LQP+        T L I  C     WRLS+QTHK++
Sbjct: 174 LDELLANADIKTETVI-------ALQPISQK--PRATQLCIETCISR-NWRLSIQTHKYL 223

Query: 209 GI 210
            I
Sbjct: 224 SI 225


>gi|213969194|ref|ZP_03397333.1| radical SAM domain protein [Pseudomonas syringae pv. tomato T1]
 gi|301384811|ref|ZP_07233229.1| radical SAM domain protein [Pseudomonas syringae pv. tomato Max13]
 gi|302063535|ref|ZP_07255076.1| radical SAM domain protein [Pseudomonas syringae pv. tomato K40]
 gi|302130601|ref|ZP_07256591.1| radical SAM domain protein [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213926192|gb|EEB59748.1| radical SAM domain protein [Pseudomonas syringae pv. tomato T1]
          Length = 215

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEIFHSLQGETRTAGLPTVFIRLTGCPL-----------RCQYCDSAYAFSGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G    
Sbjct: 51  -IQTLDDIVGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
              +D   V P+     DLK  G +E+
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127


>gi|229523533|ref|ZP_04412938.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae bv.
           albensis VL426]
 gi|254225344|ref|ZP_04918956.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125622185|gb|EAZ50507.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|229337114|gb|EEO02131.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae bv.
           albensis VL426]
          Length = 245

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59
           LY I E+F T+QGEG   G  AVF R  GC +   W   +Q   +          + ++ 
Sbjct: 24  LYRINEMFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLDSDQTSFSQILLKT 83

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           +    +      ++++     G  + ++ V+TGGEP +     L QA    G    +ET+
Sbjct: 84  SDAPTWCQATAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQIETS 142

Query: 120 GTIEPPQGID-WICVSPKAG-------CDLKIKGGQELKL-------------VFPQVNV 158
           GT E     + W+ VSPK          D  ++   E+K              +  +  V
Sbjct: 143 GTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLARAQV 202

Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           S +  I       +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 203 SAQTAI-------ALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244


>gi|302870906|ref|YP_003839542.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302573765|gb|ADL41556.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 224

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 28/158 (17%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           +++ E F++++GEG  +G  AVF RF+GCNL            C +CDT +   +  K  
Sbjct: 13  FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------SCSWCDTKY-ATENPKYE 60

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           + ++D L + I    I      +   LTGGEPL+Q  +  LI  L   GFE+ +ETNG++
Sbjct: 61  QIDIDTLLNFIASTGI------KRVTLTGGEPLIQPYIYILIDRLIYEGFEVNIETNGSV 114

Query: 123 EPPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQVN 157
                    CV   A   +  K    G E +++   +N
Sbjct: 115 SIK------CVPRDAIITMDYKCPSSGMEDRMIVDNIN 146


>gi|330950598|gb|EGH50858.1| radical SAM family protein [Pseudomonas syringae Cit 7]
          Length = 215

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 29/148 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G    
Sbjct: 51  -IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDSGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150
              +D   V P+     DLK  G +E+ 
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEVS 128


>gi|121728537|ref|ZP_01681560.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147675014|ref|YP_001216924.1| hypothetical protein VC0395_A0978 [Vibrio cholerae O395]
 gi|254286183|ref|ZP_04961143.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|121629201|gb|EAX61641.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|146316897|gb|ABQ21436.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|150423852|gb|EDN15793.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|227013282|gb|ACP09492.1| conserved hypothetical protein [Vibrio cholerae O395]
          Length = 245

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 97/235 (41%), Gaps = 41/235 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGI 57
           LY I E+F T+QGEG   G  AVF R  GC +   W   +Q  + L +      T F  I
Sbjct: 24  LYRINEMFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLDSD----QTSFSQI 79

Query: 58  Q-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
              T          A  + +++     + ++ V+TGGEP +     L QA    G    +
Sbjct: 80  LLKTNDAPTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQI 139

Query: 117 ETNGTIEPPQGID-WICVSPKAG-------CDLKIKGGQELKL-------------VFPQ 155
           ET+GT E     + W+ VSPK          D  ++   E+K              +  +
Sbjct: 140 ETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLAR 199

Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             VS +  I       +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 200 AQVSAQTAI-------ALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244


>gi|51948763|gb|AAU14302.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
          Length = 129

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G    
Sbjct: 51  -IQTLDDIMGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
              +D   V P+     DLK  G +E+
Sbjct: 103 --ALDISAVDPRVSRVIDLKTPGSKEV 127


>gi|291547693|emb|CBL20801.1| Organic radical activating enzymes [Ruminococcus sp. SR1/5]
          Length = 149

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 19/125 (15%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y + E F+++ GEG  AG +A F RF GCNL           QC +CDT +    G 
Sbjct: 1   MSTYQVVEKFVSINGEGRRAGELAAFIRFKGCNL-----------QCSYCDTSWANEPGC 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQA-LNKRGFEIAVET 118
           +  R   +++   I E   TG K      LTGGEPLL+  +  LI+A L      + +ET
Sbjct: 50  ESERLTEEEILSWIRE---TGVKN---VTLTGGEPLLRKGMEELIEAILEDPSQRVEIET 103

Query: 119 NGTIE 123
           NG+++
Sbjct: 104 NGSVD 108


>gi|254167036|ref|ZP_04873889.1| radical SAM domain protein, putative [Aciduliprofundum boonei T469]
 gi|197623892|gb|EDY36454.1| radical SAM domain protein, putative [Aciduliprofundum boonei T469]
          Length = 209

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 29/167 (17%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + EIF ++QGEG + G    F R +GCNL           +C +CDT++   +G +   
Sbjct: 2   KVNEIFTSIQGEGIYIGVSMFFVRLTGCNL-----------RCEWCDTEYAFYEGEE--- 47

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
            ++D +   +EE  +      ++  +TGGEPLLQ +V  LI  L ++ ++I +ETNG+I 
Sbjct: 48  MSIDSIIKKVEESGM------KWVCITGGEPLLQEEVYKLIDILLRKDYKILLETNGSI- 100

Query: 124 PPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQVN-VSPENYIGF 166
               ID +         L IK      E  + F  +N + P++++ F
Sbjct: 101 ---LIDKLPTEENLVISLDIKTPSSKMERAMRFENLNYLGPKDFVKF 144


>gi|153836184|ref|ZP_01988851.1| organic radical activating enzyme [Vibrio parahaemolyticus AQ3810]
 gi|149750459|gb|EDM61204.1| organic radical activating enzyme [Vibrio parahaemolyticus AQ3810]
          Length = 226

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 91/242 (37%), Gaps = 55/242 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           LY + E+F T+QGEG   G  AVF R   C +            C +CDT        K 
Sbjct: 5   LYKLNEMFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWDAEEKD 53

Query: 63  GRYNVDQLADLIEE-QWITGEKE------------GRYCVLTGGEPLLQVDVPLIQALNK 109
            R   D L    +   W T   E             ++ V+TGGEP +    PL +A   
Sbjct: 54  QRPIGDILVKTEDSPTWCTASAEDIVEQYKQQGFNAKHIVITGGEPCIYDLRPLSKAFED 113

Query: 110 RGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKI--------------------KGGQE 148
            G +  +ET+GT E       W+ VSPK     K+                    K    
Sbjct: 114 MGCQCQIETSGTSEVVTSEKTWVTVSPKVAMKGKLPVLRSALERANEIKHPVGTQKDIDH 173

Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           L  +    ++  E  I       +LQP+        T L I  C     WRLS+QTHK++
Sbjct: 174 LDELLANADIKTETVI-------ALQPISQK--PRATQLCIETCIAR-NWRLSIQTHKYL 223

Query: 209 GI 210
            I
Sbjct: 224 SI 225


>gi|71735883|ref|YP_275904.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257487001|ref|ZP_05641042.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|298488200|ref|ZP_07006236.1| Queuosine Biosynthesis QueE Radical SAM [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71556436|gb|AAZ35647.1| radical SAM domain protein [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|298157258|gb|EFH98342.1| Queuosine Biosynthesis QueE Radical SAM [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320323043|gb|EFW79132.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329685|gb|EFW85674.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330877970|gb|EGH12119.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330892249|gb|EGH24910.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330988978|gb|EGH87081.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009357|gb|EGH89413.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 215

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 29/148 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G    
Sbjct: 51  -IQTLDDIVGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150
              +D   V P+     DLK  G +E+ 
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEVS 128


>gi|197303437|ref|ZP_03168476.1| hypothetical protein RUMLAC_02159 [Ruminococcus lactaris ATCC
           29176]
 gi|197297435|gb|EDY31996.1| hypothetical protein RUMLAC_02159 [Ruminococcus lactaris ATCC
           29176]
          Length = 221

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 19/120 (15%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F+++ GEG  AG +AVF RF GCNL            C +CDT +           
Sbjct: 3   VVEKFISINGEGRRAGELAVFIRFKGCNL-----------NCSYCDTKWANEPACDYEEL 51

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTIE 123
           + D + + + E  I      +   LTGGEPLLQ D+  +  + LNK    + +ETNG ++
Sbjct: 52  SPDDICEYVSETGI------KNVTLTGGEPLLQKDIRSLVEKLLNKSDIRVEIETNGAVD 105


>gi|124486430|ref|YP_001031046.1| hypothetical protein Mlab_1617 [Methanocorpusculum labreanum Z]
 gi|124363971|gb|ABN07779.1| Radical SAM domain protein [Methanocorpusculum labreanum Z]
          Length = 202

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 22/119 (18%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F++LQGEG   G    F R SGCNL           +C +CDT++      KG   
Sbjct: 3   VTETFVSLQGEGERQGMPCFFLRLSGCNL-----------RCAWCDTEY---SFEKGTDR 48

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
           +VD+L   I +  ++      Y  +TGGEPLLQ +  +PL++ L      + +ETNGTI
Sbjct: 49  SVDELVKEIADSGLS------YVCVTGGEPLLQKEELIPLLEILAAADIHVDIETNGTI 101


>gi|312623403|ref|YP_004025016.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203870|gb|ADQ47197.1| Radical SAM domain protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 225

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 19/120 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           +++ E F++++GEG  +G  AVF RF+GCNL           +C +CDT +   +  +  
Sbjct: 14  FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------RCSWCDTKYAN-ENPEYE 61

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
             ++D L + I    I      +   LTGGEPL+Q  +  LI  L   GFE+ +ETNG++
Sbjct: 62  EIDIDNLMNFITSTGI------KRVTLTGGEPLIQPYIYLLIDRLISEGFEVNIETNGSV 115


>gi|289626505|ref|ZP_06459459.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289650951|ref|ZP_06482294.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868621|gb|EGH03330.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 215

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 29/148 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G    
Sbjct: 51  -IHTLDDIVGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150
              +D   V P+     DLK  G +E+ 
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEVS 128


>gi|226354845|ref|YP_002784585.1| organic radical activating enzyme [Deinococcus deserti VCD115]
 gi|226316835|gb|ACO44831.1| putative Organic radical activating enzyme [Deinococcus deserti
           VCD115]
          Length = 230

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 96/221 (43%), Gaps = 35/221 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y + E F T QGEG H GR A F R  GC             +C +CD+      GT   
Sbjct: 3   YPVFERFYTWQGEGVHLGRAAYFVRLYGC-----------PQECPWCDS-----AGTWHK 46

Query: 64  RYNVDQLADLIEEQWITG-----EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
            Y    +  L+  + I         EG   V+TGGEP+L    PL++AL+  G  + +ET
Sbjct: 47  DYRPAGV-QLMTPEAIAACVAQESPEGAVVVITGGEPILFDLTPLVEALHGLGRRVHLET 105

Query: 119 NGTIEPPQG-IDWICVSPKAGCDLK----IKGGQELKLVFPQVNVSPENYIGFDFER--- 170
           +G I P +G IDW+ +SPK    L     ++   E+K++    +   +     D  +   
Sbjct: 106 SG-IAPLRGAIDWVTLSPKPFGTLPLPSVVQQAHEVKIIVHDTSDIRDGLATLDGLKDDA 164

Query: 171 -FSLQPMDGPFLEENTNL--AISYCFQ-NPKWRLSVQTHKF 207
              L P      E +  +  AI+   + NP+ R   Q HK 
Sbjct: 165 VIWLHPEWSKARERDAAVLNAITEAVKANPRLRAGYQMHKL 205


>gi|186474664|ref|YP_001863635.1| hypothetical protein Bphy_7690 [Burkholderia phymatum STM815]
 gi|184198623|gb|ACC76585.1| conserved hypothetical protein [Burkholderia phymatum STM815]
          Length = 235

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 100/248 (40%), Gaps = 68/248 (27%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54
           Y + EIF +LQGEG   G  +VF R  GC +            C +CD+           
Sbjct: 16  YPVNEIFESLQGEGNFTGTPSVFVRLQGCPV-----------GCAWCDSKHTWQVMPERE 64

Query: 55  --VGIQGTKGGRY-------NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
             VG  G K GR        +V  LA+++         +  + V+TGGEP +    PLI 
Sbjct: 65  ISVGAMGEKTGRPCDSYAWCDVPTLANIVR------AADAEHVVITGGEPCMYDLRPLIA 118

Query: 106 ALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAG-------CDLKIKGGQELKLVFPQVN 157
            L      + VET+GT  P      ++  SPK G        D  ++   E+K  +P   
Sbjct: 119 KLQAWHHRVQVETSGTYVPLVTPSTFVTTSPKYGMPSGRPVLDEALERANEIK--YP--- 173

Query: 158 VSPENYIGFDFERFS-----------LQPMDGPFLEENTNLAISYCFQNPK---WRLSVQ 203
           V  +  I    ER             LQP+        ++ A   C +      WR+S+Q
Sbjct: 174 VGKQRDIDIVLERLDPIQRARGTPIWLQPLS------LSSRATGICMKAAHRYGWRVSLQ 227

Query: 204 THKFIGIR 211
           T+KFI IR
Sbjct: 228 TNKFINIR 235


>gi|70732080|ref|YP_261836.1| radical activating enzyme [Pseudomonas fluorescens Pf-5]
 gi|68346379|gb|AAY93985.1| radical activating enzyme [Pseudomonas fluorescens Pf-5]
          Length = 215

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 75/146 (51%), Gaps = 29/146 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F +LQGE   AG   VF R +GC L           +C++CD+ +    G++    
Sbjct: 7   ITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGSQR--- 52

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
               L  L+E+  + G +  RY  +TGGEPL Q + +PL+Q L   G+E+++ET+G    
Sbjct: 53  ---TLDSLLEQ--VAGFRP-RYVCVTGGEPLAQPNAIPLLQHLCDAGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQE 148
              +D   V P+     DLK  G +E
Sbjct: 103 --ALDISAVDPRVSRILDLKTPGSKE 126


>gi|312128624|ref|YP_003993498.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778643|gb|ADQ08129.1| Radical SAM domain protein [Caldicellulosiruptor hydrothermalis
           108]
          Length = 225

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 19/120 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           +++ E F++++GEG  +G  AVF RF+GCNL           +C +CDT +   +  +  
Sbjct: 14  FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------RCSWCDTKYAN-ENPEYE 61

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
             ++D L + I    I      +   LTGGEPL+Q  +  LI  L   GFE+ +ETNG++
Sbjct: 62  EIDIDNLMNFITSTGI------KRVTLTGGEPLIQPYIYLLIDRLISEGFEVNIETNGSV 115


>gi|330975318|gb|EGH75384.1| radical SAM family protein [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 215

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 29/148 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G    
Sbjct: 51  -IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150
              +D   V P+     DLK  G +E+ 
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEVS 128


>gi|330936708|gb|EGH40896.1| radical SAM family protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 215

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 29/148 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G    
Sbjct: 51  -IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150
              +D   V P+     DLK  G +E+ 
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEVS 128


>gi|213963236|ref|ZP_03391493.1| radical SAM domain protein [Capnocytophaga sputigena Capno]
 gi|213954098|gb|EEB65423.1| radical SAM domain protein [Capnocytophaga sputigena Capno]
          Length = 210

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 95/231 (41%), Gaps = 55/231 (23%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           ++  + E F +LQGEG + G  A F R  GC++            C +CD     ++ + 
Sbjct: 14  EILPLMEAFYSLQGEGFYKGTAAYFIRLGGCDV-----------GCHWCD-----VKESW 57

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
               +     D I    +   K     ++TGGEPL+     L Q L   G    +ET+G 
Sbjct: 58  AAEAHPLVPVDTIVTDALAHSKT---MIITGGEPLMWNLDLLTQKLRAAGARTHIETSGA 114

Query: 122 IEPPQGIDWICVSPKAGCDLKIK--------GGQELKLVFPQVN-----------VSPEN 162
                  DWIC+SPK     KIK           ELK+V    N           VSP+ 
Sbjct: 115 HPLSGTFDWICLSPK-----KIKRPVGDVLQKANELKMVIYNNNDFLFAEEMAAQVSPDC 169

Query: 163 YIGFDFERFSLQPMDGPFLEENTNLA--ISYCFQNPKWRLSVQTHKFIGIR 211
            +        LQP    + + N  +   + Y   +P+W+ S+Q HK++ IR
Sbjct: 170 LL-------YLQP---EWSKRNKVIPKIVDYVMAHPQWKASLQMHKYLDIR 210


>gi|297578950|ref|ZP_06940878.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297536544|gb|EFH75377.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 245

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 95/232 (40%), Gaps = 35/232 (15%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59
           LY I E+F T+QGEG   G  AVF R  GC +   W   +Q   +          + ++ 
Sbjct: 24  LYRINEMFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLDSDQTSFSQILLKT 83

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           +    +      ++++     G  + ++ V+TGGEP +     L QA    G    +ET+
Sbjct: 84  SDAPTWCQATAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFEAIGCRCQIETS 142

Query: 120 GTIEP-PQGIDWICVSPKAG-------CDLKIKGGQELKL-------------VFPQVNV 158
           GT E       W+ VSPK          D  ++   E+K              +  +  V
Sbjct: 143 GTYEVCATDNTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLARAQV 202

Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           S +  I       +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 203 SAQTAI-------ALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244


>gi|254167785|ref|ZP_04874635.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|289597123|ref|YP_003483819.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|197623313|gb|EDY35878.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|289534910|gb|ADD09257.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
          Length = 209

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 29/167 (17%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + E+F ++QGEG + G    F R +GCNL           +C +CDT++   +G +   
Sbjct: 2   KVNEMFTSIQGEGIYIGVPMFFVRLTGCNL-----------RCEWCDTEYAFYEGEE--- 47

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
            ++D +   +EE  +      ++  +TGGEPLLQ +V  LI  L ++ ++I VETNG+I 
Sbjct: 48  MSIDSIIKKVEESGM------KWVCITGGEPLLQEEVYKLIDILLRKDYKILVETNGSI- 100

Query: 124 PPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQVN-VSPENYIGF 166
               ID +         L IK      E  + F  +N + P++++ F
Sbjct: 101 ---LIDKLPTEENLVISLDIKTPSSKMERAMRFENLNYLGPKDFVKF 144


>gi|312134204|ref|YP_004001542.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           owensensis OL]
 gi|311774255|gb|ADQ03742.1| Radical SAM domain protein [Caldicellulosiruptor owensensis OL]
          Length = 224

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 19/120 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           +++ E F++++GEG  +G  AVF RF+GCNL            C +CDT +   +  K  
Sbjct: 13  FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------SCSWCDTKY-ATENPKYE 60

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           + ++D L   I    I      +   LTGGEPL+Q  +  LI  L   GFE+ +ETNG++
Sbjct: 61  QIDIDTLLSFIASSGI------KRVTLTGGEPLIQPYIYILIDRLIYEGFEVNIETNGSV 114


>gi|119944858|ref|YP_942538.1| radical SAM domain-containing protein [Psychromonas ingrahamii 37]
 gi|119863462|gb|ABM02939.1| Radical SAM domain protein [Psychromonas ingrahamii 37]
          Length = 246

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 53/240 (22%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD------------ 51
           Y + E+F T+QGEG + G  A+F R  GC++            C +CD            
Sbjct: 26  YKVNELFQTIQGEGFNTGVPAIFLRLQGCDV-----------GCAWCDTKHTWEINPDKQ 74

Query: 52  TDFVGIQGT--KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
           T+ + + G+  +  R+      +++ E    G       V+TGGEP L     L   L++
Sbjct: 75  TELILLTGSSNESTRWANVNAREIVAEIKRLG-YSANLVVITGGEPCLADLRELTTVLHE 133

Query: 110 RGFEIAVETNGT----IEPPQGIDWICVSPKAGC---------------DLKIKGGQELK 150
             F+  +ET+GT    + PP    W+ +SPK                  ++K   G E  
Sbjct: 134 FDFKTQIETSGTYPVLVAPPT---WVTLSPKVNMRAGKVVLQSALERADEIKHPVGTEKD 190

Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +   Q++   EN    + +   LQP+      + T L    C +   WRLSVQ HK++GI
Sbjct: 191 I--EQLDALLENLKSIEDKVICLQPISQKV--KATLLCSQVCIER-NWRLSVQMHKYLGI 245


>gi|307352768|ref|YP_003893819.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
           DSM 11571]
 gi|307156001|gb|ADN35381.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 204

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 23/141 (16%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK++   EIF ++QGEG + G  + F R SGCNL           +CR+CDT      G+
Sbjct: 1   MKVF---EIFPSIQGEGPYQGIPSAFIRLSGCNL-----------RCRWCDTPKTQ-DGS 45

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
                 VD++   +++  ++      +  +TGGEPL+Q D  + L++ L++ G+ + +ET
Sbjct: 46  SSEEMTVDEVFGQVKKLGLS------HVCITGGEPLIQQDELLSLLKDLHEDGYIVEIET 99

Query: 119 NGTIEPPQGIDWICVSPKAGC 139
           NGTI+P   +++  V     C
Sbjct: 100 NGTIDPVPVMEYSSVCMDIKC 120


>gi|292655864|ref|YP_003535761.1| radical SAM protein [Haloferax volcanii DS2]
 gi|291371719|gb|ADE03946.1| radical SAM protein, putative (TBD) [Haloferax volcanii DS2]
          Length = 257

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 18/131 (13%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F +LQGEG  AG  + F R SGCNL           +C FCD+     + T     
Sbjct: 21  INELFASLQGEGKLAGVPSTFVRTSGCNL-----------RCWFCDSFHTSWEPTHAW-L 68

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
           ++D++   +E           + V+TGGEPL+  +   + +     + + VETNGT+E  
Sbjct: 69  SLDEIVAEVESL------SPEHVVVTGGEPLVHDETDALLSALDDDYHLTVETNGTLETD 122

Query: 126 QGIDWICVSPK 136
             +D   +SPK
Sbjct: 123 APVDLASISPK 133


>gi|222528238|ref|YP_002572120.1| radical SAM domain-containing protein [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455085|gb|ACM59347.1| Radical SAM domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 225

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 19/120 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           +++ E F++++GEG  +G  AVF RF+GCNL            C +CDT +   +  +  
Sbjct: 14  FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------SCSWCDTKYAN-ENPQYE 61

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           +  +D L D I    I      +   LTGGEPL+Q  +  LI  L   GFE+ +ETNG++
Sbjct: 62  QIGIDALLDFILSTGI------KRVTLTGGEPLIQPHIYILIDRLIYEGFEVNIETNGSV 115


>gi|170723151|ref|YP_001750839.1| radical SAM domain-containing protein [Pseudomonas putida W619]
 gi|169761154|gb|ACA74470.1| Radical SAM domain protein [Pseudomonas putida W619]
          Length = 215

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 25/144 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            V  L  ++E+  + G K  RY  +TGGEPL Q + +PL+Q L   G+E+++ET+G ++ 
Sbjct: 51  -VRSLDSIMEQ--VAGFKP-RYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLETSGALD- 105

Query: 125 PQGIDWICVSPKAGCDLKIKGGQE 148
              I    +      DLK  G +E
Sbjct: 106 ---ISATDIRVSRVVDLKTPGSEE 126


>gi|312962750|ref|ZP_07777238.1| queuosine biosynthesis protein QueE [Pseudomonas fluorescens WH6]
 gi|311282967|gb|EFQ61560.1| queuosine biosynthesis protein QueE [Pseudomonas fluorescens WH6]
          Length = 218

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 10  ITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 53

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
            +  L D++E+  + G K  RY  +TGGEPL Q + +PL++ L   G+E+++ET+G ++
Sbjct: 54  -IRTLDDILEQ--VAGYKP-RYVCVTGGEPLAQPNAIPLLKQLCDAGYEVSLETSGALD 108


>gi|260876575|ref|ZP_05888930.1| organic radical activating enzyme [Vibrio parahaemolyticus AN-5034]
 gi|260895066|ref|ZP_05903562.1| organic radical activating enzyme [Vibrio parahaemolyticus
           Peru-466]
 gi|308125822|ref|ZP_05777715.2| organic radical activating enzyme [Vibrio parahaemolyticus K5030]
 gi|308126346|ref|ZP_05909319.2| organic radical activating enzyme [Vibrio parahaemolyticus AQ4037]
 gi|308085913|gb|EFO35608.1| organic radical activating enzyme [Vibrio parahaemolyticus
           Peru-466]
 gi|308093608|gb|EFO43303.1| organic radical activating enzyme [Vibrio parahaemolyticus AN-5034]
 gi|308110779|gb|EFO48319.1| organic radical activating enzyme [Vibrio parahaemolyticus AQ4037]
 gi|308111580|gb|EFO49120.1| organic radical activating enzyme [Vibrio parahaemolyticus K5030]
          Length = 226

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 91/242 (37%), Gaps = 55/242 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           LY + E+F T+QGEG   G  AVF R   C +            C +CDT        K 
Sbjct: 5   LYKLNEMFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWDAEEKD 53

Query: 63  GRYNVDQLADLIEE-QWITGEKE------------GRYCVLTGGEPLLQVDVPLIQALNK 109
            R   D L    +   W T   E             ++ V+TGGEP +    PL +A   
Sbjct: 54  QRPIGDILVKTEDSPTWCTASAEDIVEQYKQQGFNAKHIVITGGEPCIYDLRPLSKAFED 113

Query: 110 RGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKI--------------------KGGQE 148
            G +  +ET+GT E       W+ VSPK     K+                    K    
Sbjct: 114 MGCQCQIETSGTSEVVTSEKTWVTVSPKVAMKGKLPVLRSALERANEIKHPVGTQKDIDH 173

Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           L  +    ++  E  I       +LQP+        T L I  C     WRLS+QTHK++
Sbjct: 174 LDELLANADIKVETVI-------ALQPISQK--PRATQLCIETCIAR-NWRLSIQTHKYL 223

Query: 209 GI 210
            I
Sbjct: 224 SI 225


>gi|261252909|ref|ZP_05945482.1| queuosine Biosynthesis QueE Radical SAM [Vibrio orientalis CIP
           102891]
 gi|260936300|gb|EEX92289.1| queuosine Biosynthesis QueE Radical SAM [Vibrio orientalis CIP
           102891]
          Length = 222

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 94/238 (39%), Gaps = 47/238 (19%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y I E+F T+QGEG   G  +VF R   C +            C +CDT          
Sbjct: 1   MYKINEMFETIQGEGVFTGVPSVFVRLQECPV-----------GCAWCDTKQTWDATPTD 49

Query: 63  GRYNVDQLA--------------DLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
            R   + LA              D++ E    G    ++ V+TGGEP +    PL QA  
Sbjct: 50  ERPLNEILAKTEDSPTWCGVSAEDIVNEYKKQGYT-AKHIVITGGEPCIYDLRPLTQAFE 108

Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAG-------CDLKIKGGQELKLVFPQVNVSP 160
           + G +  +ET+GT E       W+ VSPK          D  +    E+K   P      
Sbjct: 109 ENGCQCQIETSGTFEVKATTKTWVTVSPKVAMKGKLPVIDSALLRANEIK--HPVATQKD 166

Query: 161 ENYIGFDFER--------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + +    ER         +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 167 IDQLDELLERAKVSEQTTVALQPISQK--PRATQLCIDVCVAR-NWRLSIQTHKYLSI 221


>gi|111222166|ref|YP_712960.1| mycobacteriophage protein Gp5 [Frankia alni ACN14a]
 gi|111149698|emb|CAJ61390.1| Mycobacteriophage protein Gp5 [Frankia alni ACN14a]
          Length = 221

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 23/148 (15%)

Query: 13  LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
           +QGEG  AGR+A F R  GCNL            C +CDT +       G R+++     
Sbjct: 1   MQGEGPAAGRLATFVRLGGCNL-----------SCSWCDTSYTW----DGARFDLRTEIT 45

Query: 73  LIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNGTIEPP--- 125
               + I  +      V+TGGEPLL  + P    L++ L ++   I VETNGT+ P    
Sbjct: 46  STAVETIAAKVTTDLVVITGGEPLLHQERPGWTALLRTLTQQQRAIHVETNGTVRPTPMS 105

Query: 126 -QGIDWICVSPKAGCDLKIKGGQELKLV 152
            Q +    VSPK       +G Q  +L 
Sbjct: 106 LQHVAMWVVSPKLRNAGTHRGRQRARLA 133


>gi|302187148|ref|ZP_07263821.1| radical SAM family protein [Pseudomonas syringae pv. syringae 642]
          Length = 215

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 29/148 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  L D++ +         RY  +TGGEPL Q + +P +++L   G+E+++ET+G    
Sbjct: 51  -IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIPFLKSLCDAGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150
              +D   V P+     DLK  G +E+ 
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEVS 128


>gi|146306312|ref|YP_001186777.1| radical SAM domain-containing protein [Pseudomonas mendocina ymp]
 gi|145574513|gb|ABP84045.1| Radical SAM domain protein [Pseudomonas mendocina ymp]
          Length = 226

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 29/148 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CDT +     + G   
Sbjct: 18  ITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDTAYA---FSGGEIV 63

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +D + D +           RY  +TGGEPL Q + +PL+  L   G+E+++ET+G    
Sbjct: 64  TLDSILDQV------AAYRPRYVCVTGGEPLAQPNCIPLLTRLCDAGYEVSLETSG---- 113

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150
              +D   V P+     DLK  G  E++
Sbjct: 114 --ALDVSAVDPRVSKVLDLKTPGSAEVQ 139


>gi|258593846|emb|CBE70187.1| Radical SAM domain protein [NC10 bacterium 'Dutch sediment']
          Length = 214

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 27/126 (21%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    + EIF ++QGE  +AGR  VF R +GCNL           +CR+CDT +   +G 
Sbjct: 1   MMSLRVNEIFYSIQGESTYAGRPCVFVRLTGCNL-----------RCRWCDTTYAFHEGE 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVL---TGGEPLLQVDV-PLIQALNKRGFEIAV 116
           +    +++Q+ + +          G  C L   TGGEPLLQ  V PLI  L   G+E+ +
Sbjct: 50  Q---RSIEQVLEQV---------RGYKCPLVEITGGEPLLQEAVHPLIDRLLLEGYEVLI 97

Query: 117 ETNGTI 122
           ET G++
Sbjct: 98  ETGGSL 103


>gi|238921904|ref|YP_002935418.1| queuosine biosynthesis protein QueE [Eubacterium eligens ATCC
           27750]
 gi|238873576|gb|ACR73284.1| queuosine biosynthesis protein QueE [Eubacterium eligens ATCC
           27750]
          Length = 221

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 19/120 (15%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F+++ GEG   G +AVF RF GCNL            C +CDT +           
Sbjct: 3   VVEKFISINGEGRRTGELAVFIRFKGCNL-----------NCSYCDTKWANEPACDYEEL 51

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTIE 123
           + D++ + + E  I      +   LTGGEPLLQ D+  +  + LNK    + +ETNG ++
Sbjct: 52  SPDEICEYVSETGI------KNVTLTGGEPLLQKDIRSLVEKLLNKSDIRVEIETNGAVD 105


>gi|51948805|gb|AAU14323.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
          Length = 129

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G    
Sbjct: 51  -IHTLDDIMGQVV---AYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
              +D   V P+     DLK  G +E+
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127


>gi|37522605|ref|NP_925982.1| hypothetical protein gll3036 [Gloeobacter violaceus PCC 7421]
 gi|35213606|dbj|BAC90977.1| gll3036 [Gloeobacter violaceus PCC 7421]
          Length = 214

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 97/216 (44%), Gaps = 31/216 (14%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           ++E F  T+QGEG  AG V  F R  GC +            C +CDT +    G     
Sbjct: 18  VQETFGPTIQGEGYWAGAVVDFIRLYGCPV-----------GCPWCDTGYA--DGGPQLP 64

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI- 122
             V   +DLI E      K  R  V++GGEP +   +P L++A+ + G  +A+ET+G   
Sbjct: 65  RAVRTFSDLILEL-----KSPR-VVISGGEPFIHAALPALVEAIGRTGRAVAIETSGAFW 118

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD-FERF-------SLQ 174
           +P     W+ +SPK     +     ++     +V +        D + RF       SLQ
Sbjct: 119 QPVPDWAWVTLSPKEHVSPRHPVNPQMWRRANEVKIVIAGGAELDVYRRFLPPGVPVSLQ 178

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P +    E    L +     +P++RLSVQ HK++ +
Sbjct: 179 P-EWEARERTLPLTLELLKAHPRYRLSVQLHKYLQV 213


>gi|85711961|ref|ZP_01043015.1| Organic radical activating enzyme [Idiomarina baltica OS145]
 gi|85694147|gb|EAQ32091.1| Organic radical activating enzyme [Idiomarina baltica OS145]
          Length = 223

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 43/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I EIF TLQGEG   G  ++F R  GC          + W  +++D++S       ++
Sbjct: 3   YRINEIFETLQGEGTFTGVPSIFIRLQGCPVGCPWCDTQHTWDVKQEDQVSVATMMAKSE 62

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
                 ++    +   + +LI+++        ++ V+TGGEP +     L + L  +G  
Sbjct: 63  AT----SEWAEMSSADIVELIKQR----GYRAKHVVITGGEPAMYDLRELGEVLEAQGMR 114

Query: 114 IAVETNGTIE-PPQGIDWICVSPKAGCDLKIKGG-----------QELKL-VFPQVNVSP 160
           + +ET+GT E       W+ VSPK    L + GG            E+K  +  Q ++  
Sbjct: 115 LQIETSGTYELLITAGTWVTVSPK----LDMPGGYLVRSDCLSRADEIKHPIAMQKHIDA 170

Query: 161 ENYI--GFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + +  G   +      LQP+        T LA+  C +   WRLSVQ HK++ I
Sbjct: 171 LDRLLQGQKLKSDVVICLQPISQR--PRATELAMKTCIER-NWRLSVQMHKYLNI 222


>gi|281358520|ref|ZP_06245000.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
 gi|281315002|gb|EFA99035.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
          Length = 214

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 58/118 (49%), Gaps = 19/118 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E FL+LQGE  HAGR  +F R +GCNL            C +CDT +       G   
Sbjct: 4   LVEAFLSLQGESTHAGRRCIFLRLAGCNL-----------DCNYCDTMYAH-SPESGEER 51

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           +VD+L               R   +TGGEPLL  + P L + L   GFE+ +ETNG++
Sbjct: 52  SVDELVA------AAASFPCRLVEITGGEPLLTPETPELCRRLLALGFEVLIETNGSL 103


>gi|282895310|ref|ZP_06303512.1| hypothetical protein CRD_00006 [Raphidiopsis brookii D9]
 gi|281199616|gb|EFA74476.1| hypothetical protein CRD_00006 [Raphidiopsis brookii D9]
          Length = 208

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 47/226 (20%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I E F  T+QGEG   G +  F R SGC L            C +CDT      G   G 
Sbjct: 10  IHETFQSTVQGEGYWTGSLVDFIRLSGCPL-----------GCPWCDT------GYADGG 52

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
            N+ +    I E  +  E +    V++GGEP +   +P L+QAL   G ++++ET+G+  
Sbjct: 53  ANLPRFERTIGE--LLAEIKSPRIVISGGEPFIHKHLPELVQALLGAGKQVSIETSGSFW 110

Query: 124 PPQGID-WICVSPKAGCDLK-----------------IKGGQELKLVFPQVNVSPENYIG 165
               +  WI +SPK   + K                 I+ GQE+      ++  P+ Y+ 
Sbjct: 111 KEVSLSAWITLSPKEHINPKYPVQNQFWSRANEAKIVIETGQEIDFYQEYLSARPDLYV- 169

Query: 166 FDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                  LQP +     ++  L +    Q P ++LS+QTHK+IG++
Sbjct: 170 ------YLQP-EWNSSSKSLALILQLLQQKPDYKLSLQTHKYIGLQ 208


>gi|305432704|ref|ZP_07401864.1| radical SAM domain protein [Campylobacter coli JV20]
 gi|304444213|gb|EFM36866.1| radical SAM domain protein [Campylobacter coli JV20]
          Length = 247

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 7/123 (5%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           E FL++QGEG ++G++A+F RF+GCN      G +  +     + CDT            
Sbjct: 5   ESFLSIQGEGKYSGKLAIFMRFAGCNFNCSGFGVKLIKNGKTLKGCDTIRAVFTKEFNEE 64

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNG 120
           Y +   ++L +      +      V+TGGEPL+  + P     IQAL K  FE+  E+NG
Sbjct: 65  YEILNASELFKRVLDLKKDFNPIVVITGGEPLIHHENPEFIDFIQALLKNNFEVHFESNG 124

Query: 121 TIE 123
           +IE
Sbjct: 125 SIE 127


>gi|182412684|ref|YP_001817750.1| radical SAM domain-containing protein [Opitutus terrae PB90-1]
 gi|177839898|gb|ACB74150.1| Radical SAM domain protein [Opitutus terrae PB90-1]
          Length = 231

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 21/134 (15%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGEG   G  +VF R SGCNL           +C +CDT +      +G  +
Sbjct: 3   ISEIFYSLQGEGLLTGVPSVFVRTSGCNL-----------RCNWCDTPYAS-WNPEGKPW 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA-LNKRGFEIAVETNGTIEP 124
            ++Q+   ++          R+ VLTGGEP++  ++  + A L    + I +ET  T+  
Sbjct: 51  RIEQIVREVQSH-----PTARHVVLTGGEPMIAKEIAELAAQLKGLHYHITIETAATVA- 104

Query: 125 PQGI--DWICVSPK 136
           P+GI  D   +SPK
Sbjct: 105 PEGIACDLASLSPK 118


>gi|51948899|gb|AAU14370.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
          Length = 129

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEIFHSLQGETRTTGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G    
Sbjct: 51  -IHTLDDIMGQ---VATYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
              +D   V P+     DLK  G +E+
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEV 127


>gi|325678494|ref|ZP_08158109.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Ruminococcus albus 8]
 gi|324109805|gb|EGC04006.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Ruminococcus albus 8]
          Length = 222

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 15/122 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +L+S+ E F+++ GEG  AG +A+F RF+GC+L           +C +CDT +   +   
Sbjct: 3   QLFSLAEHFISINGEGQRAGELALFLRFTGCDL-----------RCVWCDTLWAVPKDAP 51

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
               ++  L D+  +    G    R   LTGGEPL+Q   V L +AL   G  + +ETNG
Sbjct: 52  HKDKDLRSLLDIARDAVSHGV---RNVTLTGGEPLMQKGIVRLFEALLDMGLRVEIETNG 108

Query: 121 TI 122
           ++
Sbjct: 109 SV 110


>gi|302531820|ref|ZP_07284162.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptomyces
           sp. AA4]
 gi|302440715|gb|EFL12531.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptomyces
           sp. AA4]
          Length = 237

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 68/137 (49%), Gaps = 30/137 (21%)

Query: 12  TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD--- 68
           T+QGEG   GR AVF R   CNL            C+ CDT +   +     R+++D   
Sbjct: 19  TVQGEGPSIGRRAVFIRLMNCNL-----------TCKNCDTPYTWDR----TRFDLDAEG 63

Query: 69  ---QLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
               ++DL+   W+T +      V+TGGEPL+Q      L Q L   G E+ VETNGTI 
Sbjct: 64  TVASISDLL--AWVTVQSVD-LVVITGGEPLMQQRSLTALAQGLADAGLEVEVETNGTIV 120

Query: 124 P-PQGIDWIC---VSPK 136
           P P  + W+    VSPK
Sbjct: 121 PAPDLLAWVTRFNVSPK 137


>gi|320335721|ref|YP_004172432.1| Radical SAM domain-containing protein [Deinococcus maricopensis DSM
           21211]
 gi|319757010|gb|ADV68767.1| Radical SAM domain protein [Deinococcus maricopensis DSM 21211]
          Length = 230

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 64/138 (46%), Gaps = 22/138 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y + E F T QGEG H GR A F R  GC              C +CD+      GT   
Sbjct: 3   YPVYERFYTWQGEGVHLGRAAYFVRLYGC-----------PQACPWCDS-----AGTWHR 46

Query: 64  RYNVD----QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
            Y  D      A  I +       +G   V+TGGEP+L     L+ AL+  G  + +ET+
Sbjct: 47  DYRPDGVTLMTAHEIAQAVAAESPDGAVVVITGGEPILFDLTALVDALHALGRRVHLETS 106

Query: 120 GTIEPPQG-IDWICVSPK 136
           G I P +G +DW+ +SPK
Sbjct: 107 G-IAPLRGHLDWVTLSPK 123


>gi|28898413|ref|NP_798018.1| hypothetical protein VP1639 [Vibrio parahaemolyticus RIMD 2210633]
 gi|28806630|dbj|BAC59902.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 222

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 91/242 (37%), Gaps = 55/242 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y + E+F T+QGEG   G  AVF R   C +            C +CDT        K 
Sbjct: 1   MYKLNEMFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWDAEEKD 49

Query: 63  GRYNVDQLADLIEE-QWITGEKE------------GRYCVLTGGEPLLQVDVPLIQALNK 109
            R   D L    +   W T   E             ++ V+TGGEP +    PL +A   
Sbjct: 50  QRPIGDILVKTEDSPTWCTASAEDIVEQYKQQGFNAKHIVITGGEPCIYDLRPLSKAFED 109

Query: 110 RGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKI--------------------KGGQE 148
            G +  +ET+GT E       W+ VSPK     K+                    K    
Sbjct: 110 MGCQCQIETSGTSEVVTSEKTWVTVSPKVAMKGKLPVLRSALERANEIKHPVGTQKDIDH 169

Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           L  +    ++  E  I       +LQP+        T L I  C     WRLS+QTHK++
Sbjct: 170 LDELLANADIKVETVI-------ALQPISQK--PRATQLCIETCIAR-NWRLSIQTHKYL 219

Query: 209 GI 210
            I
Sbjct: 220 SI 221


>gi|312877003|ref|ZP_07736977.1| Radical SAM domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796234|gb|EFR12589.1| Radical SAM domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 225

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 19/120 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           +++ E F++++GEG  +G  AVF RF+GCNL            C +CDT +   +  +  
Sbjct: 14  FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------NCSWCDTRYAN-ENPQYE 61

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           + ++D L + I    I      +   LTGGEPL+Q  +  LI  L   GFE+ +ETNG++
Sbjct: 62  QVDIDTLLNFISSTGI------KRITLTGGEPLIQPYIYILIDRLIYEGFEVNIETNGSV 115


>gi|291550955|emb|CBL27217.1| Organic radical activating enzymes [Ruminococcus torques L2-14]
          Length = 216

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 28/144 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F ++ GEG  AG +AVF RF GCNL           +C +CDT +      +    
Sbjct: 3   VVEKFTSINGEGTRAGELAVFIRFKGCNL-----------RCSYCDTMWANEPDCQYKEE 51

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE- 123
             +++ + + E  I      R   LTGGEPLLQ D+  LI  L + G ++ +ETNG ++ 
Sbjct: 52  TPEEILNYVLETGI------RNVTLTGGEPLLQKDIRELIHLLLQAGLQVEIETNGAVDL 105

Query: 124 -------PPQGIDWICVSPKAGCD 140
                  P   +D+    P +GC+
Sbjct: 106 SAFCEERPVFTMDYKL--PSSGCE 127


>gi|254490155|ref|ZP_05103346.1| radical SAM domain protein, putative [Methylophaga thiooxidans
           DMS010]
 gi|224464641|gb|EEF80899.1| radical SAM domain protein, putative [Methylophaga thiooxydans
           DMS010]
          Length = 213

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G   VF R +GC L           +C +CDT++    G K    
Sbjct: 6   ITEIFYSLQGESRTVGLPTVFVRLTGCPL-----------RCGYCDTEYAFYGGQKM--- 51

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
               ++D++E+       + RY  +TGGEPL Q + +PL+ AL   G E+++ET+G ++
Sbjct: 52  ---DISDIVEQ---VAAYKPRYVCVTGGEPLAQPNCIPLLTALCDLGVEVSIETSGAMD 104


>gi|196230866|ref|ZP_03129727.1| Radical SAM domain protein [Chthoniobacter flavus Ellin428]
 gi|196225207|gb|EDY19716.1| Radical SAM domain protein [Chthoniobacter flavus Ellin428]
          Length = 231

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 22/143 (15%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF ++QGEG   G  +VF R SGCNL           +CR+CDT +      +G   
Sbjct: 3   ISEIFYSIQGEGELTGVPSVFVRTSGCNL-----------RCRWCDTKYAS-WNPQGDEM 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP 124
           ++ ++   ++    T      + VLTGGEP++   +  L Q   + G  I +ET GTI  
Sbjct: 51  SIAEIFARVDAFPAT------HVVLTGGEPMVAKGIHELAQRFREAGKHITIETAGTI-A 103

Query: 125 PQGI--DWICVSPKAGCDLKIKG 145
           P+GI  D   +SPK G    ++G
Sbjct: 104 PEGIACDLASLSPKLGNSTPLEG 126


>gi|213586502|ref|ZP_03368328.1| hypothetical protein SentesTyph_36610 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 170

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 75/162 (46%), Gaps = 33/162 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLW---SGREQDRLSAQCRFC 50
           Y I E+F TLQGEG   G  A+F R  GC          + W   S RE    S   +  
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTK 62

Query: 51  DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110
           ++D       K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K 
Sbjct: 63  ESD-------KWGAASSEDLLAVINRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKS 111

Query: 111 GFEIAVETNGTIE---PPQGIDWICVSPKAGCDLKIKGGQEL 149
           GF   +ET+GT E    P    W+ VSPK    + ++GG ++
Sbjct: 112 GFSCQIETSGTHEVRCTPN--TWVTVSPK----VNMRGGYDV 147


>gi|168182488|ref|ZP_02617152.1| radical SAM domain protein [Clostridium botulinum Bf]
 gi|237794898|ref|YP_002862450.1| radical SAM domain-containing protein [Clostridium botulinum Ba4
           str. 657]
 gi|182674381|gb|EDT86342.1| radical SAM domain protein [Clostridium botulinum Bf]
 gi|229261475|gb|ACQ52508.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 221

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 20/142 (14%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + E F+++ GEG  +G++A+F RF+GCNL            C +CDT +   +     
Sbjct: 3   FKVVERFVSINGEGRRSGQLAIFIRFAGCNL-----------NCSYCDTLWANEKDVSYE 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNK-RGFEIAVETNGT 121
             +   + D I+ Q I      +   LTGGEPL+Q   V L++ L+K +   + +ETNG+
Sbjct: 52  LISSKDIYDYIKSQKI------KNVTLTGGEPLMQKGIVELLKLLSKDKELYVEIETNGS 105

Query: 122 IEPPQGIDWICVSPKAGCDLKI 143
           +   + +D I  SP+   D K+
Sbjct: 106 VLLDEFLD-IENSPRFTMDYKL 126


>gi|15641377|ref|NP_231009.1| hypothetical protein VC1365 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|153819362|ref|ZP_01972029.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153821325|ref|ZP_01973992.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227081536|ref|YP_002810087.1| hypothetical protein VCM66_1320 [Vibrio cholerae M66-2]
 gi|229505054|ref|ZP_04394564.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae BX 330286]
 gi|229511276|ref|ZP_04400755.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae B33]
 gi|229518394|ref|ZP_04407838.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae RC9]
 gi|229608058|ref|YP_002878706.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae MJ-1236]
 gi|254848487|ref|ZP_05237837.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|298498551|ref|ZP_07008358.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9655859|gb|AAF94523.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|126510107|gb|EAZ72701.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126521143|gb|EAZ78366.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227009424|gb|ACP05636.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|229345109|gb|EEO10083.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae RC9]
 gi|229351241|gb|EEO16182.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae B33]
 gi|229357277|gb|EEO22194.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae BX 330286]
 gi|229370713|gb|ACQ61136.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae MJ-1236]
 gi|254844192|gb|EET22606.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|297542884|gb|EFH78934.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 245

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 96/235 (40%), Gaps = 41/235 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGI 57
           LY I E+F  +QGEG   G  AVF R  GC +   W   +Q  + L +      T F  I
Sbjct: 24  LYRINEMFEIIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLDSD----QTSFSQI 79

Query: 58  Q-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
              T          A  + +++     + ++ V+TGGEP +     L QA    G    +
Sbjct: 80  LLKTNDAPTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQI 139

Query: 117 ETNGTIEPPQGID-WICVSPKAG-------CDLKIKGGQELKL-------------VFPQ 155
           ET+GT E     + W+ VSPK          D  ++   E+K              +  +
Sbjct: 140 ETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLAR 199

Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             VS +  I       +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 200 AQVSAQTAI-------ALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244


>gi|171912287|ref|ZP_02927757.1| Radical SAM domain protein [Verrucomicrobium spinosum DSM 4136]
          Length = 231

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 20/133 (15%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E F ++QGEG   G  +VF R SGCNL           +CR+CDT +      +G   
Sbjct: 3   ISETFFSVQGEGKLTGVPSVFIRTSGCNL-----------RCRWCDTPYAS-WNPEGDDV 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP 124
           +V+   D++ E         RY V+TGGEP +   +  L+Q L   G  I +ET GT+ P
Sbjct: 51  SVE---DILAE---VNRHPTRYVVVTGGEPTIAAGMRELLQGLRDAGKHITIETAGTVMP 104

Query: 125 PQ-GIDWICVSPK 136
                D   +SPK
Sbjct: 105 TDLACDLASLSPK 117


>gi|223938514|ref|ZP_03630406.1| Radical SAM domain protein [bacterium Ellin514]
 gi|223892776|gb|EEF59245.1| Radical SAM domain protein [bacterium Ellin514]
          Length = 244

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 28/126 (22%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EI+L+LQGE   AG   +F R + CNL           +C +CDT +   +G K G  
Sbjct: 7   VNEIYLSLQGESTFAGLPCIFVRLTACNL-----------RCSYCDTAYAFTEGAKQG-- 53

Query: 66  NVDQLADLIEE---------QWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIA 115
               +A+++ E         Q + G K      LTGGEPLLQ + +PL++ L   GF + 
Sbjct: 54  ----MAEMLAEIRTLAASYSQTVGGHKMP-LIELTGGEPLLQPNSLPLMKTLCDEGFTVL 108

Query: 116 VETNGT 121
           +ET+G 
Sbjct: 109 IETSGA 114


>gi|255525616|ref|ZP_05392550.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|296185503|ref|ZP_06853913.1| radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|255510706|gb|EET87012.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|296050337|gb|EFG89761.1| radical SAM domain protein [Clostridium carboxidivorans P7]
          Length = 221

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 19/121 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + E F+++ GEG  +G++AVF RF+GCNL           +C +CDT +   +     
Sbjct: 3   FKVVEKFISINGEGPMSGQLAVFIRFAGCNL-----------RCSYCDTLWANEKDVPYE 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVETNGT 121
            +N  ++ + I+   I      +   LTGGEPL+Q D+  L++ L   +   + VETNG+
Sbjct: 52  TFNAKEIYEYIKSTSI------KNVTLTGGEPLMQQDIMELLKLLCEDKNLYVEVETNGS 105

Query: 122 I 122
           I
Sbjct: 106 I 106


>gi|163781704|ref|ZP_02176704.1| hypothetical protein HG1285_02438 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882924|gb|EDP76428.1| hypothetical protein HG1285_02438 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 218

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 39/225 (17%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           S+ EI+ ++QGEG   G  ++F R  GCNL           +C +CD      Q      
Sbjct: 13  SVNEIYESIQGEGLLVGTPSIFIRLQGCNL-----------RCPWCD------QPEALSF 55

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
            N     + I ++    E   R+ V+TGGEP    ++  L++AL + GF + +ETNGT+ 
Sbjct: 56  SNTTIPVEGILQK--VQEFPARHVVITGGEPFAHQNLHVLVRALIEEGFSLQIETNGTLW 113

Query: 124 PPQGID------WICVSPKAGCDL-----KIKGGQELKLV----FPQVNVSPENYIGFDF 168
             +G+D       I  SPKA  +       IK   ELK V    F    V  E + G   
Sbjct: 114 -NEGLDSMAEQVHITCSPKAAANFFVNPRVIKHTNELKFVVDEEFSSDVVLREEFRGLLL 172

Query: 169 -ERFSLQPMDG--PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            E+  LQP      FL +  ++      +  K R+  Q HK +G+
Sbjct: 173 AEKVVLQPEGNKVSFLRKALDIQRELSLKGFKVRVIPQVHKLLGL 217


>gi|187779781|ref|ZP_02996254.1| hypothetical protein CLOSPO_03377 [Clostridium sporogenes ATCC
           15579]
 gi|187773406|gb|EDU37208.1| hypothetical protein CLOSPO_03377 [Clostridium sporogenes ATCC
           15579]
          Length = 226

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 20/142 (14%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + E F+++ GEG  +G++A+F RF+GCNL            C +CDT +   +     
Sbjct: 8   FKVVERFVSINGEGRRSGQLAIFIRFAGCNL-----------NCSYCDTLWANEKDVSYQ 56

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNK-RGFEIAVETNGT 121
             +   + D I+ Q I      +   LTGGEPL+Q   V L++ L+K +   + +ETNG+
Sbjct: 57  LISSKDIYDYIKSQKI------KNVTLTGGEPLMQKGIVELLKVLSKDKELYVEIETNGS 110

Query: 122 IEPPQGIDWICVSPKAGCDLKI 143
           +   + +D I  SP    D K+
Sbjct: 111 VLLDEFLD-IENSPSFTMDYKL 131


>gi|198282218|ref|YP_002218539.1| Radical SAM domain-containing protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667706|ref|YP_002424583.1| radical SAM domain protein [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198246739|gb|ACH82332.1| Radical SAM domain protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519919|gb|ACK80505.1| radical SAM domain protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 214

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 21/118 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    GR A F R +GC L           +CR+CDT +       GG +
Sbjct: 7   ITEIFHSLQGETRSVGRPATFVRLTGCPL-----------RCRYCDTAY----AFHGGEW 51

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
              ++ +++E+    G    R  V+TGGEPL Q DV PL+  L   G E+ +ET+G +
Sbjct: 52  R--RIPEILEQVRAGG---NRLVVVTGGEPLAQADVLPLMTQLCDAGHEVFLETSGAL 104


>gi|290967883|ref|ZP_06559433.1| radical SAM domain protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290782022|gb|EFD94600.1| radical SAM domain protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 210

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 97/225 (43%), Gaps = 44/225 (19%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           KLY + E+F ++ GEG  AG +A F R  GCNL           +C +CDT +   +GT 
Sbjct: 4   KLY-VNELFNSIDGEGRRAGELASFIRLCGCNL-----------RCSYCDTTYAFTEGTP 51

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG- 120
                       +EE  I  + + R   LTGGEPLLQ    L+Q L  R  ++ +ETNG 
Sbjct: 52  MA----------VEE--ILSQLQYRNITLTGGEPLLQDVHLLLQRLQDR--DVNIETNGS 97

Query: 121 -TIEPPQG-------IDWICVSPKAGCDLKIKGGQELK-------LVFPQVNVSPENYIG 165
            +I P          +D+  +S      +K +  Q L+       +V    ++     I 
Sbjct: 98  VSIRPYLSYSHVWFTVDYKSISSGMTTAMKEENFQLLRPQDVLKFVVGTHADLEQARKIC 157

Query: 166 FDFERFSLQPMDGPF--LEENTNLAISYCFQNPKWRLSVQTHKFI 208
             F       +   F  +E    +A    ++   WRL +Q HK+I
Sbjct: 158 AYFNPSCPIYISAVFAAIEPKEIVAYMEAYRLMNWRLQLQLHKYI 202


>gi|282900250|ref|ZP_06308202.1| hypothetical protein CRC_01639 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194865|gb|EFA69810.1| hypothetical protein CRC_01639 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 208

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 49/227 (21%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I E F  T+QGEG   G +  F R SGC L            C +CDT      G   G 
Sbjct: 10  IHETFQSTVQGEGYWTGSLVDFIRLSGCPL-----------SCPWCDT------GYADGG 52

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI- 122
            N+ +    I E  +  E +    V++GGEP +   +P L++AL   G ++++ET+G+  
Sbjct: 53  ANLPRFERTIGE--LLAELKSPRIVISGGEPFIHKHLPELVEALLGAGKQVSIETSGSFW 110

Query: 123 -EPPQGIDWICVSPKAGCDLK-----------------IKGGQELKLVFPQVNVSPENYI 164
            E P    WI +SPK   + K                 I+ GQE++    Q++  P+  +
Sbjct: 111 KEVPLSA-WITLSPKEHINPKYPVQNQFWSRANEAKIVIETGQEIEFYQEQLSAHPDLCV 169

Query: 165 GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               E  S          ++ +L +    Q P ++LS+QTHK+IG++
Sbjct: 170 YLQPEWNSSS--------KSLDLILQLLQQKPDYKLSLQTHKYIGLQ 208


>gi|26987960|ref|NP_743385.1| radical SAM domain protein [Pseudomonas putida KT2440]
 gi|148546497|ref|YP_001266599.1| radical SAM domain-containing protein [Pseudomonas putida F1]
 gi|24982673|gb|AAN66849.1|AE016313_8 radical activating enzyme [Pseudomonas putida KT2440]
 gi|5514780|emb|CAB50782.1| hypothetical protein [Pseudomonas putida]
 gi|148510555|gb|ABQ77415.1| Radical SAM domain protein [Pseudomonas putida F1]
 gi|313497577|gb|ADR58943.1| Radical SAM domain protein [Pseudomonas putida BIRD-1]
          Length = 215

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 25/144 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            V  L  ++E+  + G K  RY  +TGGEPL Q + +PL+Q L   G+E+++ET+G ++ 
Sbjct: 51  -VRTLDSILEQ--VAGFKP-RYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLETSGALDI 106

Query: 125 PQGIDWICVSPKAGCDLKIKGGQE 148
             G D          DLK  G +E
Sbjct: 107 A-GTD---TRVSRVVDLKTPGSEE 126


>gi|126180149|ref|YP_001048114.1| radical SAM domain-containing protein [Methanoculleus marisnigri
           JR1]
 gi|125862943|gb|ABN58132.1| Radical SAM domain protein [Methanoculleus marisnigri JR1]
          Length = 202

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 100/227 (44%), Gaps = 48/227 (21%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF +LQGEG + GR   F R +GCNL           +C +CDT +       G   
Sbjct: 3   VSEIFRSLQGEGKNQGRPCTFIRLAGCNL-----------RCAWCDTPYA---REGGEEM 48

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT-- 121
           +V Q+ D +   W+     G +  +TGGEPLLQ +  + L++  +  G+ + +ETNGT  
Sbjct: 49  SVTQVLDRV---WLL---RGTHICITGGEPLLQREDVLKLLEKFSLHGYTVEIETNGTCD 102

Query: 122 ---IEPPQGI--DWICVSPKAGCDLKIKG------------GQELKLVFPQVNVSPENYI 164
              ++P   I  D  C S     DL +                E  L++ +  +S     
Sbjct: 103 FRDMQPYASICMDVKCPSSGEKSDLSLLSFITPRDCVKFVVADEDDLLYARAVMSRCEIR 162

Query: 165 GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           G  F    + P++G    +   +A     +N   R  +Q HK +G++
Sbjct: 163 GEVF----ISPVEG---SDYRAVADQIVEENLPVRFQLQLHKILGVK 202


>gi|104783064|ref|YP_609562.1| radical activating enzyme [Pseudomonas entomophila L48]
 gi|95112051|emb|CAK16778.1| putative radical activating enzyme [Pseudomonas entomophila L48]
          Length = 215

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 25/144 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            V  L  ++E+  + G K  RY  +TGGEPL Q + +PL+Q L   G+E+++ET+G ++ 
Sbjct: 51  -VRTLDSILEQ--VAGFKP-RYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLETSGALDI 106

Query: 125 PQGIDWICVSPKAGCDLKIKGGQE 148
             G D          DLK  G +E
Sbjct: 107 A-GTD---TRVSRVVDLKTPGSEE 126


>gi|294055328|ref|YP_003548986.1| Radical SAM domain protein [Coraliomargarita akajimensis DSM 45221]
 gi|293614661|gb|ADE54816.1| Radical SAM domain protein [Coraliomargarita akajimensis DSM 45221]
          Length = 226

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 21/156 (13%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           K   + E F + QGEG HAGR A F R  GC +            C +CD+      GT 
Sbjct: 3   KQLPVHEQFYSFQGEGCHAGRAAYFIRLFGCPV-----------HCPWCDS-----AGTW 46

Query: 62  GGRYNVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
              Y  + +  ++    +    +    + V+TGGEP +     L   L + G+ + +ET+
Sbjct: 47  HPDYVPESIDRVLANDLLASVQKTAAEFVVITGGEPAIHDLSELTAVLRRAGYPVHLETS 106

Query: 120 GTIEPPQGIDWICVSP---KAGCDLKIKGGQELKLV 152
           G  E     DW+ +SP   K      +K   E KL+
Sbjct: 107 GAFELKGVFDWVTLSPKRWKLPLPENLKRADEFKLI 142


>gi|145641210|ref|ZP_01796790.1| predicted methyltransferase [Haemophilus influenzae R3021]
 gi|145274047|gb|EDK13913.1| predicted methyltransferase [Haemophilus influenzae 22.4-21]
          Length = 181

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 90/200 (45%), Gaps = 35/200 (17%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           +VF RF  CNL            C +CDT +   +     R++V Q+   +E+ W    K
Sbjct: 3   SVFVRFGKCNL-----------DCPWCDTPYNNFK-----RWSVSQI---LEKVWSFSSK 43

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
                ++TGGEP +   +  L++     G+ +A+ETNG    P  ID+I  SPK+    K
Sbjct: 44  N---IIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLKAIPAQIDYIATSPKSLYAHK 100

Query: 143 -----IKGGQELKLV----FPQVNVSPENYIGFDFERFSLQPMDGP--FLEENTNLA-IS 190
                I    E+++V     P      E  I       S   +DG    LE  T L  ++
Sbjct: 101 YEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSPCEIDGKMNLLETITLLGQLN 160

Query: 191 YCFQNPKWRLSVQTHKFIGI 210
                PKW+LS+QTHK IGI
Sbjct: 161 QRSNKPKWQLSLQTHKLIGI 180


>gi|258621538|ref|ZP_05716571.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258586156|gb|EEW10872.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 216

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 95/224 (42%), Gaps = 31/224 (13%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           +F T+QGEG   G  AVF R  GC +   W   +Q   + +        + ++ +    +
Sbjct: 1   MFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLESDQTSFPQILLKTSDAPTW 60

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP- 124
                 D+IE     G  + ++ V+TGGEP +     L QA    G +  +ET+GT E  
Sbjct: 61  CQASAQDVIERYRAQG-YQAKHIVITGGEPCIYDLTELTQAFEAIGCQCQIETSGTYEIL 119

Query: 125 PQGIDWICVSPKAG-------CDLKIKGGQELKLVFPQVNVSPENYI----------GFD 167
                W+ VSPK          D  ++   E+K   P   V+ EN I            D
Sbjct: 120 ATPTTWVTVSPKVAMKGKLPILDSALQRANEIK--HP---VATENDIDKLDELLVRASVD 174

Query: 168 FER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +   +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 175 AKTVIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215


>gi|260437277|ref|ZP_05791093.1| radical SAM domain protein [Butyrivibrio crossotus DSM 2876]
 gi|292810587|gb|EFF69792.1| radical SAM domain protein [Butyrivibrio crossotus DSM 2876]
          Length = 222

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 25/128 (19%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y + E F+++ GEG  AG +A F R  GCNL            C +CDT +      
Sbjct: 1   MAEYKVVETFVSINGEGRKAGELAFFLRLKGCNL-----------DCSYCDTKW----AN 45

Query: 61  KGGRYNVDQLADLIEEQWITG--EKEG-RYCVLTGGEPLLQVDVPLIQAL--NKRGFEIA 115
           KG     D   ++++E  I G  +K G R   +TGGEPL + D+ ++  L  N R   + 
Sbjct: 46  KG-----DASFEIMDENEIYGLIKKSGIRNVTITGGEPLFRKDMAILLELLDNDRELSVE 100

Query: 116 VETNGTIE 123
           +ETNG+++
Sbjct: 101 IETNGSVD 108


>gi|301063545|ref|ZP_07204071.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300442354|gb|EFK06593.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 215

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 21/117 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF ++QGE  +AG   VF R +GCNL           +C +CDT +      +GG  
Sbjct: 5   VNEIFYSIQGESSYAGLPCVFVRLTGCNL-----------RCSYCDTRYA---YEEGGIL 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
            ++ + + I         + R   +TGGEPL+Q   P LI++L + G+++ +ETNG+
Sbjct: 51  EINHIFEQI------APMQCRLVEITGGEPLVQEKTPILIESLLEDGYDVLLETNGS 101


>gi|88810549|ref|ZP_01125806.1| Radical SAM domain protein [Nitrococcus mobilis Nb-231]
 gi|88792179|gb|EAR23289.1| Radical SAM domain protein [Nitrococcus mobilis Nb-231]
          Length = 225

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 31/166 (18%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF +LQGE G  G   VF R +GC L           +C +CDT +    G K    
Sbjct: 18  VTEIFYSLQGEAGTVGAPTVFVRLTGCPL-----------RCHYCDTAYAFHGGEK---M 63

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           ++ ++ D +      GE   ++  +TGGEPL Q   + L+ +L  RG+ +++ET+G    
Sbjct: 64  SIIRILDRV------GEHAAKFVTVTGGEPLAQRGCLTLLSSLCDRGYRVSLETSG---- 113

Query: 125 PQGIDWICVSPKA--GCDLKIKG-GQELKLVFPQVN-VSPENYIGF 166
              +D   V P+     DLK  G G+E +  +  +N + P + + F
Sbjct: 114 --ALDVQAVDPRVIKVMDLKTPGSGEERRNRWENLNYLRPHDELKF 157


>gi|302879778|ref|YP_003848342.1| Radical SAM domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302582567|gb|ADL56578.1| Radical SAM domain protein [Gallionella capsiferriformans ES-2]
          Length = 219

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G   VF R +GC L           +C +CDT +       GG+ 
Sbjct: 12  ITEIFFSLQGETRLIGLPTVFVRLTGCPL-----------RCVYCDTAY----AFSGGKN 56

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           +   LA+++++     + + RY  +TGGEPL Q + +PL++AL   G+++++ET+G ++
Sbjct: 57  HT--LAEILQQ---VAQYKTRYVTVTGGEPLAQRNCLPLLKALCDAGYQVSLETSGALD 110


>gi|218961765|ref|YP_001741540.1| Radical SAM [Candidatus Cloacamonas acidaminovorans]
 gi|167730422|emb|CAO81334.1| Radical SAM [Candidatus Cloacamonas acidaminovorans]
          Length = 209

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 21/131 (16%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           K  ++ EIF +LQGE  ++G   +F R S CNL           +C +CDT +   +G  
Sbjct: 3   KHLNVTEIFYSLQGESAYSGYPCIFIRLSECNL-----------RCVYCDTQYAFGKGKS 51

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
                   ++ ++EE     +       +TGGEPLLQ DV  L + L+K  ++I +ETNG
Sbjct: 52  MA------ISSIMEE---VKKYPCSLTEITGGEPLLQEDVDALFEELHKSSYKILLETNG 102

Query: 121 TIEPPQGIDWI 131
            I   +  D++
Sbjct: 103 AISLEKVPDYV 113


>gi|269467818|gb|EEZ79570.1| organic radical activating enzyme [uncultured SUP05 cluster
           bacterium]
          Length = 211

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 21/120 (17%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +I EIF +LQGE    G   VF R +GC L           +C +CDT++      KG  
Sbjct: 5   NINEIFYSLQGEAREVGLPTVFVRLTGCPL-----------RCTYCDTEY----AFKGN- 48

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
            N   ++ ++ E     + + +Y  +TGGEPL Q++   L+ AL K G+++++ET+G+I+
Sbjct: 49  -NTLSISKILTE---VKKYKTQYVCITGGEPLAQINCHVLLDALVKEGYQVSLETSGSID 104


>gi|158314658|ref|YP_001507166.1| radical SAM domain-containing protein [Frankia sp. EAN1pec]
 gi|158110063|gb|ABW12260.1| Radical SAM domain protein [Frankia sp. EAN1pec]
          Length = 243

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 24/143 (16%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           L  ++    T QGEG  AG+ A+F R S CNL            C +CD      +    
Sbjct: 18  LVVVERFGPTFQGEGPTAGQQALFLRLSACNL-----------SCAWCDEPHTWDR---- 62

Query: 63  GRYNVDQLADLIEEQWITG---EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117
            R++VD  ++ + ++ + G   +      V+TGGEPLLQ     PL+ AL + G ++ +E
Sbjct: 63  NRFDVDAHSERLSQRTLLGWALDSPVTRVVVTGGEPLLQQAALFPLVAALAQAGRQVEIE 122

Query: 118 TNGTIEPP----QGIDWICVSPK 136
           TNGT+ P     + ++   VSPK
Sbjct: 123 TNGTVAPTAEMVEVVERFTVSPK 145


>gi|124008813|ref|ZP_01693501.1| coenzyme PQQ synthesis protein, conjectural [Microscilla marina
           ATCC 23134]
 gi|123985604|gb|EAY25489.1| coenzyme PQQ synthesis protein, conjectural [Microscilla marina
           ATCC 23134]
          Length = 250

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 84/185 (45%), Gaps = 41/185 (22%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-----------VG 56
           EIF T+QGEG   G+  VF R S CNL            C +CDTD+           V 
Sbjct: 11  EIFYTIQGEGKSLGKPTVFIRSSLCNL-----------HCIWCDTDYTWNWKNTPYPHVF 59

Query: 57  IQGTKGGRYN-VDQLADLIEEQWITGEKEGRYC---VLTGGEPLLQVD--VPLIQALNKR 110
            Q     +Y+  +Q+ +L   Q I  E     C   VLTGGEPLLQ    V L+  L K+
Sbjct: 60  DQTPGYEKYDKKEQIVELSTAQ-IIEEIAPYACKNLVLTGGEPLLQQKAWVELMAQLRKK 118

Query: 111 --GFEIAVETNGTIEPPQG----IDWICVSPK---AGCDLKIKGGQELKLVFPQVNVSPE 161
             G+   VETNGT+ P       ID   VSPK   +   +KI+   E    F Q   SP+
Sbjct: 119 DAGYWFEVETNGTLLPSSEFDALIDQYNVSPKLENSNNSMKIREKPEAYAFFRQ---SPK 175

Query: 162 NYIGF 166
            +  F
Sbjct: 176 AWFKF 180


>gi|160893109|ref|ZP_02073897.1| hypothetical protein CLOL250_00655 [Clostridium sp. L2-50]
 gi|156865192|gb|EDO58623.1| hypothetical protein CLOL250_00655 [Clostridium sp. L2-50]
          Length = 222

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 21/126 (16%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  + + E F+++ GE   AG +AVF RF+GCNL            C +CDT +      
Sbjct: 1   MAKFKVAERFVSINGESVKAGELAVFIRFTGCNL-----------NCSYCDTKWANEADA 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP---LIQALNKRGFEIAVE 117
                  +++ D I+   +      R   LTGGEPL+Q D+    L+ A+++   ++ VE
Sbjct: 50  PYEELTDEEIYDYIKRTGV------RNVTLTGGEPLIQKDIDKLLLMLAMDEE-LQVEVE 102

Query: 118 TNGTIE 123
           TNG+++
Sbjct: 103 TNGSVD 108


>gi|325274586|ref|ZP_08140642.1| radical SAM domain-containing protein [Pseudomonas sp. TJI-51]
 gi|324100228|gb|EGB98018.1| radical SAM domain-containing protein [Pseudomonas sp. TJI-51]
          Length = 215

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 25/144 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            V  L  ++E+  + G +  RY  +TGGEPL Q + +PL+Q L   G+E+++ET+G ++ 
Sbjct: 51  -VRTLDSILEQ--VAGFRP-RYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLETSGALDI 106

Query: 125 PQGIDWICVSPKAGCDLKIKGGQE 148
             G D          DLK  G +E
Sbjct: 107 A-GTD---TRVSRVVDLKTPGSEE 126


>gi|269964054|ref|ZP_06178359.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831195|gb|EEZ85349.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 226

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 92/242 (38%), Gaps = 55/242 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           LY + E+F T+QGEG   G  AVF R   C +            C +CDT        +G
Sbjct: 5   LYKLNEMFETIQGEGVFTGVPAVFVRLQVCPV-----------GCSWCDTKQTWYAEEEG 53

Query: 63  GRYNVDQLADLIEE-QWITGEKE------------GRYCVLTGGEPLLQVDVPLIQALNK 109
            R   D L    +   W     E             ++ V+TGGEP +     L  A  +
Sbjct: 54  QRQIGDILVKTEDSPTWCFASAEDIVAEYKKQGFNAKHIVITGGEPCIYDLRALTAAFEE 113

Query: 110 RGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKI--------------------KGGQE 148
            G +  +ET+GT E       W+ VSPK     K+                    K   +
Sbjct: 114 MGCQCQIETSGTSEVVTSESTWVTVSPKVAMKGKLPVLKSALERANEIKHPVGTQKDIDQ 173

Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           L  +    +++ +  I       +LQP+        T L I  C     WRLSVQTHK++
Sbjct: 174 LDSLLASADIAEKTVI-------ALQPISQK--PRATQLCIDTCVAR-NWRLSVQTHKYL 223

Query: 209 GI 210
            I
Sbjct: 224 SI 225


>gi|167035186|ref|YP_001670417.1| radical SAM domain-containing protein [Pseudomonas putida GB-1]
 gi|166861674|gb|ABZ00082.1| Radical SAM domain protein [Pseudomonas putida GB-1]
          Length = 215

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 72/144 (50%), Gaps = 25/144 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGTL---- 51

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
              +  D I EQ + G K  RY  +TGGEPL Q + +PL+Q L   G+E+++ET+G ++ 
Sbjct: 52  ---RTLDSILEQ-VAGFKP-RYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLETSGALD- 105

Query: 125 PQGIDWICVSPKAGCDLKIKGGQE 148
              I           DLK  G +E
Sbjct: 106 ---ITGTDTRVSRVVDLKTPGSEE 126


>gi|91224504|ref|ZP_01259766.1| hypothetical protein V12G01_17742 [Vibrio alginolyticus 12G01]
 gi|91190846|gb|EAS77113.1| hypothetical protein V12G01_17742 [Vibrio alginolyticus 12G01]
          Length = 216

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 90/236 (38%), Gaps = 55/236 (23%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68
           +F T+QGEG   G  AVF R   C +            C +CDT           R   D
Sbjct: 1   MFETIQGEGVFTGVPAVFVRLQECPV-----------GCSWCDTKQTWYADENDQRQIGD 49

Query: 69  QL-------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
            L             A+ I EQ+       ++ V+TGGEP +    PL +A    G +  
Sbjct: 50  ILVKTEDSPTWCVASAENIVEQYQQQGFNAKHIVITGGEPCIYDLRPLTKAFEDMGCQCQ 109

Query: 116 VETNGTIEPPQGID-WICVSPKAGCDLKI--------------------KGGQELKLVFP 154
           +ET+GT E     + W+ VSPK     K+                    K    L  +  
Sbjct: 110 IETSGTSEVITSENTWVTVSPKVAMKGKLPVLNSALERANEIKHPVGTQKDIDHLDDLLA 169

Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             NV+ E  I       +LQP+        T L I  C     WRLSVQTHK++ I
Sbjct: 170 NANVAAETII-------ALQPISQK--PRATQLCIDTCIAR-NWRLSVQTHKYLSI 215


>gi|283955402|ref|ZP_06372901.1| hypothetical protein C414_000450084 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793162|gb|EFC31932.1| hypothetical protein C414_000450084 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 254

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 66/128 (51%), Gaps = 17/128 (13%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNL------WSGREQDRLSAQCRFCDTDFVGIQGTK 61
           E FL++QGEG ++G++A+F RF+GCN           + D++   C     D +    TK
Sbjct: 5   ESFLSIQGEGKYSGKLAIFMRFAGCNFNCLGFNVKILKNDKILTGC-----DTIRAVFTK 59

Query: 62  GGRYNVDQL--ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIA 115
             + N + L   +L++      +      V+TGGEPL+  + P     IQ L K  FEI 
Sbjct: 60  DFKENYETLNANELLKRVIKLKQNFDPIIVITGGEPLIHYENPEFINFIQMLLKNKFEIH 119

Query: 116 VETNGTIE 123
            E+NG+IE
Sbjct: 120 FESNGSIE 127


>gi|167768058|ref|ZP_02440111.1| hypothetical protein CLOSS21_02602 [Clostridium sp. SS2/1]
 gi|317498354|ref|ZP_07956650.1| radical SAM superfamily protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|167710387|gb|EDS20966.1| hypothetical protein CLOSS21_02602 [Clostridium sp. SS2/1]
 gi|291561057|emb|CBL39857.1| Organic radical activating enzymes [butyrate-producing bacterium
           SSC/2]
 gi|316894359|gb|EFV16545.1| radical SAM superfamily protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 222

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 19/124 (15%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M+ + + E F+++ GEG  AGR+A+F R  GCNL            C +CDT +   +  
Sbjct: 1   METFKVVETFVSINGEGKKAGRLAMFIRLKGCNL-----------NCSYCDTTWANKRDA 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVET 118
           +       Q+ + I+E  +          LTGGEPLL  +V  +    L     EI +ET
Sbjct: 50  RCELLTAPQIVERIKEAGV------ELVTLTGGEPLLDENVSELIGSILMMPKVEIEIET 103

Query: 119 NGTI 122
           NG++
Sbjct: 104 NGSV 107


>gi|119477238|ref|ZP_01617474.1| probable radical activating enzyme [marine gamma proteobacterium
           HTCC2143]
 gi|119449601|gb|EAW30839.1| probable radical activating enzyme [marine gamma proteobacterium
           HTCC2143]
          Length = 214

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 99/233 (42%), Gaps = 51/233 (21%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    + EIF +LQGE    G   VF R +GC L           +C +CDT++    G 
Sbjct: 1   MTDLRLTEIFYSLQGETRTVGLPTVFVRLTGCPL-----------RCAYCDTEYAFHGGE 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
           K            I+E+        RY  +TGGEPL Q +  PL+ AL  +G+E+++ET+
Sbjct: 50  KWS-------LQAIQEK--VASYHPRYVTVTGGEPLAQPNCWPLLTALCDQGYEVSLETS 100

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF------DFE-- 169
           G I    G+D   V      DLK     E+ + ++  +  +SP++ I F      D+E  
Sbjct: 101 GAIS-LLGVDSRVVKVM---DLKTPASNEMSRNLYENIELLSPQDQIKFVICDRKDYEWA 156

Query: 170 RFSL--------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           RF L               P  G    E+  LA      N   R  VQ HK +
Sbjct: 157 RFKLDEHRLVDRVDEVLFSPSFGQI--ESAELAEWILADNLPVRFQVQLHKLL 207


>gi|66044666|ref|YP_234507.1| radical SAM family protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255373|gb|AAY36469.1| Radical SAM [Pseudomonas syringae pv. syringae B728a]
          Length = 215

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 29/148 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  L D++ +         RY  +TGGEPL Q + + L++ L   G+E+++ET+G    
Sbjct: 51  -IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIALLKRLCDAGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150
              +D   V P+     DLK  G +E+ 
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEVS 128


>gi|194334507|ref|YP_002016367.1| radical SAM domain-containing protein [Prosthecochloris aestuarii
           DSM 271]
 gi|194312325|gb|ACF46720.1| Radical SAM domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 222

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 23/117 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIFL++QGE   AG   VF R +GC           S++C +CDT +    GT     
Sbjct: 7   INEIFLSIQGESSRAGYPCVFVRLTGC-----------SSRCTWCDTRYAMTNGTTTSLQ 55

Query: 66  N-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           N +D +A            +     +TGGEPL Q +V PL+Q L  RG+ + +ET G
Sbjct: 56  NIIDTIAGF----------KTPLVEITGGEPLEQENVYPLMQQLCNRGYNVMLETGG 102


>gi|312898407|ref|ZP_07757797.1| radical SAM domain protein [Megasphaera micronuciformis F0359]
 gi|310620326|gb|EFQ03896.1| radical SAM domain protein [Megasphaera micronuciformis F0359]
          Length = 217

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 92/226 (40%), Gaps = 42/226 (18%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F+++ GEG  AG +A+F RF GCNL            C +CDT +           
Sbjct: 3   VVEKFVSINGEGQRAGELALFIRFQGCNL-----------SCTYCDTAWANEADCPYEEE 51

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE- 123
           +  ++ D    + +T         LTGGEPLLQ  +  LI  L+K GF + +ETNG +  
Sbjct: 52  SPQEIVDYACREGVTD------ITLTGGEPLLQEGIDELIDLLSKHGFHVEIETNGAVSL 105

Query: 124 --------PPQGIDWICVSPKAGCDLKIKGGQ--------ELKLVFPQ---VNVSPENYI 164
                   P   +D+    P +GC+  +  G          +K V      +  + E   
Sbjct: 106 LPFCQKRRPSFTMDYKL--PGSGCEKAMMTGNFAILTEKDTVKFVVSSTEDLQKAEEIAT 163

Query: 165 GFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
            +D        +   F   +    + +  Q     WRL +Q HKFI
Sbjct: 164 RYDLVNHCAVYISPVFGSIDPAQMVDFMKQRRLNGWRLQLQLHKFI 209


>gi|330968882|gb|EGH68948.1| radical SAM family protein [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 215

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 29/148 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7   ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  L D++ +         RY  +TGGEPL Q + + L++ L   G+E+++ET+G    
Sbjct: 51  -IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIALLRRLCDAGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150
              +D   V P+     DLK  G +E+ 
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEVS 128


>gi|319957590|ref|YP_004168853.1| radical sam domain protein [Nitratifractor salsuginis DSM 16511]
 gi|319419994|gb|ADV47104.1| Radical SAM domain protein [Nitratifractor salsuginis DSM 16511]
          Length = 253

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 19/186 (10%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQG 59
           ++ + E FL++QGEG +AG  + F R  GCNL     G E D    +   CDT F   + 
Sbjct: 1   MFWLTEKFLSIQGEGRYAGVPSYFLRTGGCNLHCPGFGAEYDVEGEKRYGCDTWFSVDRA 60

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVDVP----LIQALNKRGFE 113
                  V+  A L+EE      + G   + V+TGGEPL+    P    +++ L +RG +
Sbjct: 61  FAARWQAVESAAPLLEEMDRAFLEIGYLPHVVITGGEPLIYAADPAFYEVVEGLVERGVQ 120

Query: 114 IAVETNGTIEPPQGIDWICVSPKAGCDLKI------KGGQELKLVFPQVNVSPENYIGFD 167
           I  ETNGT+ P    D++       C   +       G  + + + P+V  +  +  G  
Sbjct: 121 ITFETNGTVAP----DFLRYGAYKACTFALSVKLSNSGEPKERRIHPEVLRTIASEAGEA 176

Query: 168 FERFSL 173
           F +F+L
Sbjct: 177 FLKFTL 182


>gi|88604065|ref|YP_504243.1| radical SAM family protein [Methanospirillum hungatei JF-1]
 gi|88189527|gb|ABD42524.1| Radical SAM [Methanospirillum hungatei JF-1]
          Length = 234

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 101/241 (41%), Gaps = 78/241 (32%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGEG  +G   +F R +GCNL            C +CDT        +GG  
Sbjct: 35  IAEIFTSLQGEGLTSGYPTIFIRLAGCNL-----------SCSYCDTP----ASRQGGM- 78

Query: 66  NVDQLADLIEEQWITGE--KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
                 D+   + + G   ++  Y  +TGGEPLLQ D    L + L K G  +++ETNGT
Sbjct: 79  ------DMNVSEVVAGALLQKPHYVCITGGEPLLQKDEVAELARQLIKAGKMVSIETNGT 132

Query: 122 I---EPPQGIDWICVSPK-------------------------AGCDLKIKGGQELKLVF 153
           +   + P  I  IC+  K                          G D  ++  +++ +  
Sbjct: 133 VPFDDLPSDIS-ICMDVKCPSSGEFSNINLLSDLKSTDSVKFVVGTDDDLQYAEKVIMSH 191

Query: 154 P---QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF-QNPKWRLSVQTHKFIG 209
           P   ++ +SP    G D++R +                 SY   +N   R+ +Q HKFIG
Sbjct: 192 PTKAEIFISP--IYGTDYQRIA-----------------SYILSRNLPARMQLQLHKFIG 232

Query: 210 I 210
           +
Sbjct: 233 L 233


>gi|302876981|ref|YP_003845614.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307687672|ref|ZP_07630118.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302579838|gb|ADL53850.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
          Length = 220

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 107/233 (45%), Gaps = 48/233 (20%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y + E F+++ GEG  AG +AVF RF GCNL           +C +CDT +        
Sbjct: 1   MYKVVEKFVSINGEGLRAGELAVFIRFLGCNL-----------KCSYCDTKWANEPECPY 49

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRG-FEIAVETNG 120
              + +++   I+E  +      R   LTGGEPL+Q ++  LI  L K G   I +ETNG
Sbjct: 50  ELMSGEEIYAYIKETGV------RNVTLTGGEPLIQKEMKELIDLLLKDGLLRIEIETNG 103

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN----VSPENYIGF------DFER 170
           +++  Q I++   S +    L  KG   L   + + +    ++ ++ + F      D ER
Sbjct: 104 SVDVQQ-INY--SSERVSITLDYKGKSSLMEGYMKRDSFKLLTKKDSVKFVVGDNEDLER 160

Query: 171 FSLQPMDGPFLEENTNLAISYCF------------QNPKW---RLSVQTHKFI 208
            +L  +    L E TN+  S  F            +N K    R+ +Q HK+I
Sbjct: 161 -ALSFIKECELLEKTNVLFSCIFDKIQPAEVVEFMKNNKLIEARIQLQLHKYI 212


>gi|254506224|ref|ZP_05118367.1| organic radical activating enzyme [Vibrio parahaemolyticus 16]
 gi|219550704|gb|EED27686.1| organic radical activating enzyme [Vibrio parahaemolyticus 16]
          Length = 216

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 94/230 (40%), Gaps = 43/230 (18%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNL----------WSGREQDRLSAQCRFCDTDFVGI- 57
           +F T+QGEG   G  +VF R   C +          W    QD         +T F  I 
Sbjct: 1   MFETIQGEGVFTGVPSVFVRLQECPVGCAWCDTKQTWDATPQD---------ETSFSEIM 51

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           + T+         A  I +++   E   ++ V+TGGEP +    PL +A    G +  +E
Sbjct: 52  KKTQDSPTWCQSSAQGIVDEYRNQEYTAKHIVITGGEPCIYDLTPLTEAFEAIGCQCQIE 111

Query: 118 TNGTIEPPQGID--WICVSPKAGC-------DLKIKGGQELKLVFPQVNVSPENYIGFDF 168
           T+GT E  +  D  W+ VSPK          D  +    E+K   P       + +    
Sbjct: 112 TSGTSEV-RATDNTWVTVSPKVAMKGKLPVLDSALVRANEIK--HPVATQKDIDQLDELL 168

Query: 169 ER--------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           ER         +LQP+        T L I  C +   WRLS+QTHK++ I
Sbjct: 169 ERAKVPETTVVALQPISQK--PRATQLCIDVCVKR-NWRLSIQTHKYLSI 215


>gi|304312904|ref|YP_003812502.1| Putative radical activating enzyme [gamma proteobacterium HdN1]
 gi|301798637|emb|CBL46869.1| Putative radical activating enzyme [gamma proteobacterium HdN1]
          Length = 218

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 25/146 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G   VF R +GC L           +C++CDT +     + G + 
Sbjct: 10  ITEIFHSLQGETRTLGLPTVFVRLTGCPL-----------RCQYCDTAYAF---SGGQQM 55

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           +++Q+ + +            Y  +TGGEPL Q + +PL+QAL  +G+E+++ET+G ++ 
Sbjct: 56  SLEQILETV------AGFRTHYVTVTGGEPLAQPNCIPLLQALCDQGYEVSLETSGALD- 108

Query: 125 PQGIDWICVSPKAGCDLKIKGGQELK 150
              I  I        DLK  G  E+ 
Sbjct: 109 ---ISEIDARVVRVVDLKTPGSGEMH 131


>gi|262375547|ref|ZP_06068780.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Acinetobacter lwoffii SH145]
 gi|262309801|gb|EEY90931.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Acinetobacter lwoffii SH145]
          Length = 236

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C +CDT +   +G  G R 
Sbjct: 20  ITEIFYSLQGEANAAGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERQ 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           ++D   D+I+    T + +  Y  +TGGEPL Q + +PL+Q L   G E+++ET+G ++
Sbjct: 66  SLD---DIIQ---TTLDFKTPYVCVTGGEPLAQPNALPLMQRLADLGCEVSLETSGALD 118


>gi|87311106|ref|ZP_01093230.1| hypothetical protein DSM3645_18841 [Blastopirellula marina DSM
           3645]
 gi|87286197|gb|EAQ78107.1| hypothetical protein DSM3645_18841 [Blastopirellula marina DSM
           3645]
          Length = 228

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 19/132 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EI+ ++QGEG   G  + F R SGCNL           +C FCDT     +  +G   
Sbjct: 3   IAEIYRSIQGEGALTGVTSTFVRASGCNL-----------RCWFCDTPHASWK-PEGEDL 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           +V ++   I         +  + VLTGGEP+L  + +PL + ++  G  I +ET GT+  
Sbjct: 51  SVAEILGRI------ALLDCDHVVLTGGEPMLFAEMIPLCEGIHVAGRHITIETAGTLYL 104

Query: 125 PQGIDWICVSPK 136
           P   D + +SPK
Sbjct: 105 PLTCDVMSISPK 116


>gi|124027076|ref|YP_001012396.1| organic radical activating protein NrdG [Hyperthermus butylicus DSM
           5456]
 gi|123977770|gb|ABM80051.1| Organic radical activating enzyme, NrdG [Hyperthermus butylicus DSM
           5456]
          Length = 235

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 26/149 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E+F ++QGEG   G  +VF R +GCNL           +C FCDT +       G   
Sbjct: 18  VVEVFASIQGEGPFTGTYSVFVRLAGCNL-----------RCPFCDTRY-AWSLEAGKPL 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE 123
            V++L + I         E    V+TGGEPLLQ      L++ L   G  + +ETNG + 
Sbjct: 66  GVEELVEEI------ARYEPSLVVITGGEPLLQRHPLNSLVEGLESLGLRVQLETNGILP 119

Query: 124 PPQGID-----WICVSPKAGCDLKIKGGQ 147
            P   +     +  VSPK    +++ G +
Sbjct: 120 APARDEQLWRVYHVVSPK-DVPVRVPGAK 147


>gi|237668046|ref|ZP_04528030.1| radical SAM domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|237656394|gb|EEP53950.1| radical SAM domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 222

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 19/123 (15%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +++I E FL++ GEG  +G +A F RF GCNL           +C +CDT +   +    
Sbjct: 1   MFNIIEKFLSVDGEGPSSGELATFIRFQGCNL-----------RCSWCDTVYSWQKENIN 49

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
            R N  ++ D I+   +          LTGGEPL+Q ++   L    +     I +ETNG
Sbjct: 50  ERLNAKEIYDYIKSNKVNN------VTLTGGEPLIQKNIDELLRLLDDDSNLNIHIETNG 103

Query: 121 TIE 123
           +I+
Sbjct: 104 SID 106


>gi|182416803|ref|ZP_02948194.1| Fe-S oxidoreductase of MoaA family [Clostridium butyricum 5521]
 gi|182379265|gb|EDT76764.1| Fe-S oxidoreductase of MoaA family [Clostridium butyricum 5521]
          Length = 222

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 19/123 (15%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +++I E FL++ GEG  +G +A F RF GCNL           +C +CDT +   +    
Sbjct: 1   MFNIIEKFLSVDGEGPSSGELATFIRFQGCNL-----------RCSWCDTVYSWQKENIN 49

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
            R N  ++ D I+   +          LTGGEPL+Q ++   L    +     I +ETNG
Sbjct: 50  ERLNAKEIYDYIKSNKVNN------VTLTGGEPLIQKNIDELLRLLDDDSNLNIHIETNG 103

Query: 121 TIE 123
           +I+
Sbjct: 104 SID 106


>gi|152987293|ref|YP_001349882.1| radical activating enzyme [Pseudomonas aeruginosa PA7]
 gi|150962451|gb|ABR84476.1| probable radical activating enzyme [Pseudomonas aeruginosa PA7]
          Length = 215

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C +CDT +       GG  
Sbjct: 7   ITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAY----AFSGG-- 49

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  L  ++E        + RY  +TGGEPL Q + +PL++ L   G+E+++ET+G    
Sbjct: 50  EIVSLDAILER---VAAYKPRYICVTGGEPLAQPNCIPLLERLCDAGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
              +D   V P+     DLK  G  E+
Sbjct: 103 --ALDVSRVDPRVSKVLDLKTPGSGEV 127


>gi|153940843|ref|YP_001390900.1| radical SAM domain-containing protein [Clostridium botulinum F str.
           Langeland]
 gi|152936739|gb|ABS42237.1| radical SAM domain protein [Clostridium botulinum F str. Langeland]
 gi|295318962|gb|ADF99339.1| radical SAM domain protein [Clostridium botulinum F str. 230613]
          Length = 221

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 20/142 (14%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + E F+++ GEG   G++A+F RF+GCNL            C +CDT +      K  
Sbjct: 3   FKVVESFISINGEGRRCGQLAIFIRFAGCNL-----------NCSYCDTLWA---NEKDV 48

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFEIAVETNGT 121
            Y V    D+ E       KE +   LTGGEPLLQ  +  L++ L+K +   + +ETNG+
Sbjct: 49  PYEVLSSKDIYE---YIKSKEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105

Query: 122 IEPPQGIDWICVSPKAGCDLKI 143
           I   + ++ I  SP    D K+
Sbjct: 106 ILLDEFLN-IENSPSFTMDYKL 126


>gi|85860085|ref|YP_462287.1| queuosine biosynthesis protein [Syntrophus aciditrophicus SB]
 gi|85723176|gb|ABC78119.1| queuosine biosynthesis protein [Syntrophus aciditrophicus SB]
          Length = 215

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 28/132 (21%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF ++QGE    G   VF R +GCNL           +C +CDT +   +GT    +
Sbjct: 5   VNEIFYSIQGESSFIGIPCVFVRLTGCNL-----------RCSYCDTRYAYEEGTL---W 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVL---TGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
           ++  + D I            +C L   TGGEPL+Q + P LI+ L  RG  + +ETNG+
Sbjct: 51  DIPDILDRISSY---------HCPLVEITGGEPLIQKETPLLIRDLLDRGCHVLLETNGS 101

Query: 122 IEPPQGIDWICV 133
             P + ID  CV
Sbjct: 102 -RPIRTIDERCV 112


>gi|329893688|ref|ZP_08269822.1| Queuosine Biosynthesis QueE Radical SAM [gamma proteobacterium
           IMCC3088]
 gi|328923615|gb|EGG30927.1| Queuosine Biosynthesis QueE Radical SAM [gamma proteobacterium
           IMCC3088]
          Length = 230

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 21/118 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G   VF R +GC L           +C +CDT++    GT+    
Sbjct: 22  ISEIFYSLQGETRTLGLPTVFIRLTGCPL-----------RCVYCDTEYAFHGGTQIA-- 68

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
               L D++E+         R+  +TGGEPL Q +  PL+Q L   G+E+++ET+G +
Sbjct: 69  ----LGDILEQ---AAAFNTRFVTVTGGEPLAQPNCWPLLQMLCDEGYEVSLETSGAL 119


>gi|209525918|ref|ZP_03274452.1| Radical SAM domain protein [Arthrospira maxima CS-328]
 gi|209493595|gb|EDZ93916.1| Radical SAM domain protein [Arthrospira maxima CS-328]
          Length = 204

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 96/215 (44%), Gaps = 40/215 (18%)

Query: 12  TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
           T+QGEG  AG    F R +GC +            C +CDT +    G KG   N+    
Sbjct: 13  TIQGEGYWAGTPVDFIRLAGCPV-----------GCPWCDTGYA--DGGKGLPRNMRSFD 59

Query: 72  DLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI-EPPQGID 129
           +L+       E      V++GGEP +   +P L++ L + G ++++ET+G   +    + 
Sbjct: 60  ELL------AELVSPRVVISGGEPFIYPQLPDLVRVLEETGRQVSIETSGAFWQDVSDLC 113

Query: 130 WICVSPKAGCDLKI-------KGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL- 181
           WI +SPK     +        +   E+KLV   ++V  E  + F   R +       FL 
Sbjct: 114 WITLSPKEHISPRYPVVSQMWRRASEIKLV---IDVGDE--LEFYRSRLAENSTIPVFLQ 168

Query: 182 ------EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                 +    L ++   Q P +RLSVQ HK+IG+
Sbjct: 169 PQWTDIDRTLPLVLAKLKQFPGYRLSVQLHKYIGV 203


>gi|170758709|ref|YP_001786976.1| radical SAM domain-containing protein [Clostridium botulinum A3
           str. Loch Maree]
 gi|169405698|gb|ACA54109.1| radical SAM domain protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 221

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 20/142 (14%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + E F+++ GEG   G++A+F RF+GCNL            C +CDT +      K  
Sbjct: 3   FKVAERFVSINGEGRRCGQLAIFIRFAGCNL-----------NCSYCDTLWA---NEKDV 48

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFEIAVETNGT 121
            Y V    D+ E       KE +   LTGGEPLLQ  +  L++ L+K +   + +ETNG+
Sbjct: 49  PYEVLSSKDIYE---YIKSKEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105

Query: 122 IEPPQGIDWICVSPKAGCDLKI 143
           I   + ++ I  SP    D K+
Sbjct: 106 ILLDEFLN-IENSPSFTMDYKL 126


>gi|170756011|ref|YP_001781191.1| radical SAM domain-containing protein [Clostridium botulinum B1
           str. Okra]
 gi|169121223|gb|ACA45059.1| radical SAM domain protein [Clostridium botulinum B1 str. Okra]
          Length = 221

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 20/142 (14%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + E F+++ GEG   G++A+F RF+GCNL            C +CDT +      K  
Sbjct: 3   FKVVESFVSINGEGRRCGQLAIFIRFAGCNL-----------NCSYCDTLWA---NEKDV 48

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFEIAVETNGT 121
            Y V    D+ E       KE +   LTGGEPLLQ  +  L++ L+K +   + +ETNG+
Sbjct: 49  PYEVLSSKDIYE---YIKSKEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105

Query: 122 IEPPQGIDWICVSPKAGCDLKI 143
           I   + ++ I  SP    D K+
Sbjct: 106 ILLDEFLN-IENSPSFTMDYKL 126


>gi|254282112|ref|ZP_04957080.1| radical SAM domain protein [gamma proteobacterium NOR51-B]
 gi|219678315|gb|EED34664.1| radical SAM domain protein [gamma proteobacterium NOR51-B]
          Length = 217

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 98/236 (41%), Gaps = 67/236 (28%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G   VF R +GC L           +C +CDT +       GG  
Sbjct: 9   ITEIFHSLQGEARTVGLPTVFVRLTGCPL-----------RCVYCDTAY----AFSGGEL 53

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
               L D++E   + G    R CV TGGEPL Q + + L+ AL  RG+++++ET+G +  
Sbjct: 54  TT--LDDILER--VAGFSCTRVCV-TGGEPLAQPECLSLLTALCDRGYDVSLETSGAM-- 106

Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQV------------NVSPENYIGF------ 166
                     P AG D ++    +LK   P               ++P + I F      
Sbjct: 107 ----------PIAGADTRVSRVLDLKT--PDSGECHRNDWSNIEQLTPHDQIKFVVCSRT 154

Query: 167 DFE--RFSLQPMDGPFLEENTNLAISYCFQNP----KW--------RLSVQTHKFI 208
           D+E  RF L     P    +   + SY    P    +W        RL +Q HK +
Sbjct: 155 DYEWARFKLDEFKLPTRVSDVLFSPSYGVVEPAELAQWLLDDRLAARLQLQLHKLL 210


>gi|258627553|ref|ZP_05722330.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258580135|gb|EEW05107.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 216

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 91/221 (41%), Gaps = 25/221 (11%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           +F T+QGEG   G  AVF R  GC +   W   +Q   + +        + ++ +    +
Sbjct: 1   MFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLESDQTSFPQILLKTSDAPTW 60

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP- 124
                 D+IE     G  + ++ V+TGGEP +     L QA    G +  +ET+GT E  
Sbjct: 61  CQASAQDVIERYRAQG-YQAKHIVITGGEPCIYDLTELTQAFEAIGCQCQIETSGTYEIL 119

Query: 125 PQGIDWICVSPKAG-------CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS----- 172
                W+ VSPK          D  ++   E+K   P       + +     R S     
Sbjct: 120 ATPTTWVTVSPKVAMKGKLLILDSALQRANEIK--HPVATEKDIDNLDELLVRASVDTKT 177

Query: 173 ---LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 178 VIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215


>gi|262368582|ref|ZP_06061911.1| radical SAM domain-containing protein [Acinetobacter johnsonii
           SH046]
 gi|262316260|gb|EEY97298.1| radical SAM domain-containing protein [Acinetobacter johnsonii
           SH046]
          Length = 236

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   +G   VF R +GC L           +C +CDT +   +G  G R 
Sbjct: 20  ITEIFYSLQGEANTSGLPTVFIRLTGCPL-----------RCTYCDTTY-SFEG--GERQ 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           ++DQ+         T + +  Y  +TGGEPL Q + +PL+Q L   G E+++ET+G ++
Sbjct: 66  SLDQIIQ------TTLDFKTPYVCVTGGEPLAQPNALPLMQRLADLGCEVSLETSGALD 118


>gi|327481488|gb|AEA84798.1| radical activating enzyme [Pseudomonas stutzeri DSM 4166]
          Length = 224

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   +G   VF R +GC L           +C++CDT +       GG  
Sbjct: 16  ITEIFYSLQGETRTSGLPTVFVRLTGCPL-----------RCQYCDTAY----AFSGGEL 60

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
                 D I E+        RY  +TGGEPL Q + VPL+Q L   G+E+++ET+G ++
Sbjct: 61  ---MALDAILER--VAAYNPRYVCVTGGEPLAQPNCVPLLQRLCDAGYEVSLETSGALD 114


>gi|300112861|ref|YP_003759436.1| radical SAM domain-containing protein [Nitrosococcus watsonii
           C-113]
 gi|299538798|gb|ADJ27115.1| Radical SAM domain protein [Nitrosococcus watsonii C-113]
          Length = 213

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 21/124 (16%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK   I EIF +LQGE    G    F R +GC L           +C +CDT++   QG 
Sbjct: 1   MKRLRITEIFYSLQGEARSVGWPTAFVRLTGCPL-----------RCHYCDTEY-AFQG- 47

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119
            G    +D++ D++ E  +      R+  +TGGEPL+Q   + L+  L   G+E+++ET+
Sbjct: 48  -GNWMALDRILDVVAEFGV------RHVTVTGGEPLVQSACLELLTRLCDAGYEVSLETS 100

Query: 120 GTIE 123
           G ++
Sbjct: 101 GALD 104


>gi|227498703|ref|ZP_03928847.1| radical SAM family protein [Acidaminococcus sp. D21]
 gi|226904159|gb|EEH90077.1| radical SAM family protein [Acidaminococcus sp. D21]
          Length = 222

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 25/122 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + EIF ++ GEG   G +A F RF+GCNL           +C +CDT +         
Sbjct: 10  FPVVEIFDSIDGEGKRTGYMATFVRFAGCNL-----------RCSYCDTAYA-------- 50

Query: 64  RYNVDQLADLIEE----QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
            ++  Q  + + E    Q IT     R   LTGGEP+LQ    L + L   G+E+ +ETN
Sbjct: 51  -WDASQAKEWLSEDNLFQQITAYPWKR-VTLTGGEPMLQPIETLCRRLGDAGYEVNIETN 108

Query: 120 GT 121
           G 
Sbjct: 109 GA 110


>gi|225848024|ref|YP_002728187.1| organic radical activating enzyme [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644046|gb|ACN99096.1| organic radical activating enzyme [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 217

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 32/177 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + EIF T++GEG   G   VF R  GCNL           +C +CDT +       G 
Sbjct: 10  FKVVEIFRTVEGEGRWVGLPVVFIRLEGCNL-----------RCSWCDTTY----SYDGK 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            Y V  L ++++E  ++     R C+ TGGEP L  ++  L+++L    + + +ETNGT+
Sbjct: 55  TYTVKTLEEILKE--VSTYNLKRVCI-TGGEPFLTSNLDILVKSLLDEDYYVFIETNGTL 111

Query: 123 EPPQGID------WICVSPK-----AGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
              +  D      +I  SPK        DL I   +ELK V  + N+S  + I  DF
Sbjct: 112 WNERFKDLNLDRLYITCSPKPPFYFVNKDL-IPYIKELKFVVDE-NLSLNHIIKPDF 166


>gi|148379522|ref|YP_001254063.1| radical SAM domain protein [Clostridium botulinum A str. ATCC 3502]
 gi|153934167|ref|YP_001383899.1| radical SAM domain-containing protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153937587|ref|YP_001387447.1| radical SAM domain-containing protein [Clostridium botulinum A str.
           Hall]
 gi|226948886|ref|YP_002803977.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|148289006|emb|CAL83095.1| putative radical SAM-superfamily protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|152930211|gb|ABS35711.1| radical SAM domain protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152933501|gb|ABS39000.1| radical SAM domain protein [Clostridium botulinum A str. Hall]
 gi|226841117|gb|ACO83783.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 221

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 20/142 (14%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + E F+++ GEG   G++A+F RF+GCNL            C +CDT +      K  
Sbjct: 3   FKVVERFVSINGEGRRCGQLAIFIRFAGCNL-----------NCSYCDTLWA---NEKDV 48

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFEIAVETNGT 121
            Y V    D+ E       KE +   LTGGEPLLQ  +  L++ L+K +   + +ETNG+
Sbjct: 49  PYEVLSSKDIYE---YIKSKEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105

Query: 122 IEPPQGIDWICVSPKAGCDLKI 143
           I   + ++ I  SP    D K+
Sbjct: 106 ILLDEFLN-IENSPSFTMDYKL 126


>gi|146283135|ref|YP_001173288.1| radical activating enzyme [Pseudomonas stutzeri A1501]
 gi|145571340|gb|ABP80446.1| probable radical activating enzyme [Pseudomonas stutzeri A1501]
          Length = 213

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   +G   VF R +GC L           +C++CDT +       GG  
Sbjct: 5   ITEIFYSLQGETRTSGLPTVFVRLTGCPL-----------RCQYCDTAY----AFSGGEL 49

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
                 D I E+        RY  +TGGEPL Q + VPL+Q L   G+E+++ET+G ++
Sbjct: 50  ---MALDAILER--VAAYNPRYVCVTGGEPLAQPNCVPLLQRLCDAGYEVSLETSGALD 103


>gi|86151465|ref|ZP_01069680.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315123765|ref|YP_004065769.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841812|gb|EAQ59059.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315017487|gb|ADT65580.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 247

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 7/123 (5%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF---CDTDFVGIQGTKGGR 64
           E FL++QGEG + G++A+F RF+GCN        ++S   +    CDT            
Sbjct: 5   ESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFKES 64

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNG 120
           Y      +L++      +      V+TGGEPL+  + P     IQ L K  FEI  E+NG
Sbjct: 65  YETLNANELLKRVIKLKQDFNPIVVITGGEPLIHYENPEFIKFIQMLLKNKFEIHFESNG 124

Query: 121 TIE 123
           +IE
Sbjct: 125 SIE 127


>gi|167747133|ref|ZP_02419260.1| hypothetical protein ANACAC_01846 [Anaerostipes caccae DSM 14662]
 gi|167654093|gb|EDR98222.1| hypothetical protein ANACAC_01846 [Anaerostipes caccae DSM 14662]
          Length = 222

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 19/124 (15%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M+++ I E F+++ GEG  AGR+++F R  GCNL            C +CDT +   +  
Sbjct: 1   MEVFKIAESFVSINGEGKKAGRLSMFIRLRGCNL-----------NCSYCDTKWAISKKG 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LI-QALNKRGFEIAVET 118
           +       +++ +++E  +          LTGGEPLL  ++  LI   L+    E+ +ET
Sbjct: 50  EAELMTAAEVSQMVKESGVD------LVTLTGGEPLLDENISGLIGSILSLPKMELEIET 103

Query: 119 NGTI 122
           NG+I
Sbjct: 104 NGSI 107


>gi|53804445|ref|YP_113696.1| radical activating enzyme family protein [Methylococcus capsulatus
           str. Bath]
 gi|53758206|gb|AAU92497.1| radical activating enzyme family protein [Methylococcus capsulatus
           str. Bath]
          Length = 215

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 21/120 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           L  I EIF +LQGE    G   VF R +GC L           +C +CDT +    G + 
Sbjct: 5   LVRITEIFFSLQGETRTVGLPTVFVRLTGCPL-----------RCSYCDTAYAFSGGERM 53

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGT 121
                  +A+++E     G    RY  +TGGEPL Q   +PL+ AL   G+++++ET G 
Sbjct: 54  ------SIAEIVER---VGRYGARYVTVTGGEPLAQKACLPLLTALCDEGYQVSLETGGA 104


>gi|116749416|ref|YP_846103.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698480|gb|ABK17668.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 215

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 61/122 (50%), Gaps = 27/122 (22%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF ++QGE G+AG   VF R +GCNL           +C +CDT           RY
Sbjct: 5   VNEIFHSIQGESGYAGWPCVFVRLTGCNL-----------RCSYCDT-----------RY 42

Query: 66  NVDQLADLIEEQWITGEKEGRYCVL---TGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
             D+  D +  + I G      C L   TGGEPLLQ + P L+  L   G  + VETNG+
Sbjct: 43  AYDE-GDFVTLREIIGRVRRFDCPLVEITGGEPLLQPETPELVAELLDLGHTVLVETNGS 101

Query: 122 IE 123
           ++
Sbjct: 102 MD 103


>gi|86153735|ref|ZP_01071938.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121613080|ref|YP_999885.1| radical SAM domain-containing protein [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167004851|ref|ZP_02270609.1| hypothetical protein Cjejjejuni_00920 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85842696|gb|EAQ59908.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87250333|gb|EAQ73291.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 247

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 7/123 (5%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF---CDTDFVGIQGTKGGR 64
           E FL++QGEG + G++A+F RF+GCN        ++S   +    CDT            
Sbjct: 5   ESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFKES 64

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNG 120
           Y      +L++      +      V+TGGEPL+  + P     IQ L K  FEI  E+NG
Sbjct: 65  YETLNANELLKRVIKLKQDFNPIVVITGGEPLIHYENPEFIKFIQMLLKNKFEIHFESNG 124

Query: 121 TIE 123
           +IE
Sbjct: 125 SIE 127


>gi|330896138|gb|EGH28359.1| radical SAM family protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 215

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 29/148 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC             +C++CD+ +    GT     
Sbjct: 7   ITEIFHSLQGETRTAGLPTVFVRLTGCPF-----------RCQYCDSAYAFSGGT----- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  L D++ +         RY  +TGGEPL Q + + L++ L   G+E+++ET+G    
Sbjct: 51  -IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIALLKRLCDAGYEVSLETSG---- 102

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150
              +D   V P+     DLK  G +E+ 
Sbjct: 103 --ALDISAVDPRVSRVVDLKTPGSKEVS 128


>gi|283955607|ref|ZP_06373100.1| LOW QUALITY PROTEIN: radical SAM domain protein [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283792832|gb|EFC31608.1| LOW QUALITY PROTEIN: radical SAM domain protein [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 247

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 7/123 (5%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF---CDTDFVGIQGTKGGR 64
           E FL++QGEG + G++A+F RF+GCN        ++S   +    CDT            
Sbjct: 5   ESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNNKTLIGCDTMRAVFTKDFKES 64

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNG 120
           Y      +L++      +      V+TGGEPL+  + P     IQ L K  FEI  E+NG
Sbjct: 65  YETLNANELLKRVIKLKQGFNPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFESNG 124

Query: 121 TIE 123
           +IE
Sbjct: 125 SIE 127


>gi|325283487|ref|YP_004256028.1| Radical SAM domain-containing protein [Deinococcus proteolyticus
           MRP]
 gi|324315296|gb|ADY26411.1| Radical SAM domain protein [Deinococcus proteolyticus MRP]
          Length = 285

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 63/138 (45%), Gaps = 22/138 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y + E F T QGEG H GR A F R  GC              C +CD+      GT   
Sbjct: 58  YPVYERFYTWQGEGVHLGRAAYFIRLYGC-----------PQHCPWCDS-----AGTWHP 101

Query: 64  RYNVDQ--LADLIEEQWITGEKE--GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
            Y  +   L D          +   G   ++TGGEP+L    PL  AL+  G  + +ET+
Sbjct: 102 EYRPESVGLMDAQALADAVAAESPAGAVVIITGGEPILFDLAPLTDALHAIGRRVHIETS 161

Query: 120 GTIEPPQG-IDWICVSPK 136
           G I P +G +DW+ +SPK
Sbjct: 162 G-IAPLRGELDWVTLSPK 178


>gi|193215257|ref|YP_001996456.1| radical SAM domain-containing protein [Chloroherpeton thalassium
           ATCC 35110]
 gi|193088734|gb|ACF14009.1| Radical SAM domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 219

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 21/119 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + EIF ++QGE   AG   VF R SGC+L           +C +CDT +    G + 
Sbjct: 1   MLKVNEIFHSIQGESSKAGWPCVFIRLSGCDL-----------RCSYCDTGYAFFDGKEF 49

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
            +       +++E+       + R   +TGGEPLLQ +V PL+ AL + G+E+ +ET G
Sbjct: 50  SQ------EEILEQ---VAFYKTRLVEITGGEPLLQPNVYPLMTALCEAGYEVLLETGG 99


>gi|118443804|ref|YP_878458.1| MoaA family Fe-S oxidoreductase [Clostridium novyi NT]
 gi|118134260|gb|ABK61304.1| Fe-S oxidoreductase of MoaA family CAC3625 [Clostridium novyi NT]
          Length = 222

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 19/142 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y + E F+++ GEG  +G+++VF RF+GCNL            C +CDT +      +  
Sbjct: 3   YKVVEKFISINGEGKSSGQLSVFIRFAGCNL-----------NCSYCDTKWA---NEEKA 48

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL--NKRGFEIAVETNGT 121
            Y++    ++ E   +T   E +   LTGGEPLLQ  +  +  L  +     I +ETNG+
Sbjct: 49  PYSIMTEKEIYEYIKLT---EIKNVTLTGGEPLLQEGILTLLKLLCSDENLNIEIETNGS 105

Query: 122 IEPPQGIDWICVSPKAGCDLKI 143
           I            PK   D K+
Sbjct: 106 IPLKDFTSIKNNPPKFTMDYKL 127


>gi|86149669|ref|ZP_01067899.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88597314|ref|ZP_01100549.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218561841|ref|YP_002343620.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85839937|gb|EAQ57196.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190375|gb|EAQ94349.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112359547|emb|CAL34331.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|315927801|gb|EFV07127.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315928774|gb|EFV08047.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 247

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 11/125 (8%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF---CDTDFVGIQGTKGGR 64
           E FL++QGEG + G++A+F RF+GCN        ++S   +    CDT  +    TK  +
Sbjct: 5   ESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDT--IRAVFTKDFK 62

Query: 65  YNVDQL-ADLIEEQWITGEKE-GRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
            + + L A+ + ++ I  +K+     V+TGGEPL+  + P     IQ L K  FEI  E+
Sbjct: 63  ESYETLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFES 122

Query: 119 NGTIE 123
           NG+IE
Sbjct: 123 NGSIE 127


>gi|284050732|ref|ZP_06380942.1| hypothetical protein AplaP_04589 [Arthrospira platensis str.
           Paraca]
 gi|291570892|dbj|BAI93164.1| possible organic radical activating enzyme [Arthrospira platensis
           NIES-39]
          Length = 204

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 36/214 (16%)

Query: 12  TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
           T+QGEG  AG    F R +GC +            C +CDT +    G KG   NV    
Sbjct: 13  TIQGEGYWAGTPVDFIRLAGCPV-----------GCPWCDTGYA--DGGKGLPRNVRSFD 59

Query: 72  DLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI-EPPQGID 129
            L+       E      V++GGEP +   +P L++ L   G ++++ET+G   +    + 
Sbjct: 60  QLL------AELVSPRVVISGGEPFIYPQLPDLVRVLEDSGRQVSIETSGAFWQDVSDLC 113

Query: 130 WICVSPKAG-------CDLKIKGGQELKLVFPQVNVSPE-NYIGFDFERFSLQPM----D 177
           WI +SPK              +   E+KLV   ++V  E  + G      S  P+     
Sbjct: 114 WITLSPKEHISPGYPVVSPMWRRASEIKLV---IDVGDELEFYGCRLAENSTIPVFLQPQ 170

Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
              +E    L +    Q P +RLSVQ HK+IG++
Sbjct: 171 WTDIERTLPLVLEKLKQFPGYRLSVQLHKYIGVQ 204


>gi|330502228|ref|YP_004379097.1| radical SAM domain-containing protein [Pseudomonas mendocina NK-01]
 gi|328916514|gb|AEB57345.1| radical SAM domain-containing protein [Pseudomonas mendocina NK-01]
          Length = 226

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 29/148 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CDT +     + G   
Sbjct: 18  ITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDTAYA---FSGGEIV 63

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +D++ D +            Y  +TGGEPL Q + + L+  L   G+E+++ET+G    
Sbjct: 64  TLDRILDQV------AAYRPHYVCVTGGEPLAQPNCISLLTRLCDAGYEVSLETSG---- 113

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELK 150
              +D   V P+     DLK  G  E++
Sbjct: 114 --ALDVAAVDPRVSKVLDLKTPGSAEVQ 139


>gi|57237168|ref|YP_178180.1| radical SAM domain-containing protein [Campylobacter jejuni RM1221]
 gi|57165972|gb|AAW34751.1| radical SAM domain protein [Campylobacter jejuni RM1221]
 gi|284925453|gb|ADC27805.1| radical SAM domain-containing protein [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315057600|gb|ADT71929.1| Queuosine Biosynthesis QueE Radical SAM [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 247

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 11/125 (8%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF---CDTDFVGIQGTKGGR 64
           E FL++QGEG + G++A+F RF+GCN        ++S   +    CDT  +    TK  +
Sbjct: 5   ESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDT--IRAVFTKDFK 62

Query: 65  YNVDQL-ADLIEEQWITGEKE-GRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
            + + L A+ + ++ I  +K+     V+TGGEPL+  + P     IQ L K  FEI  E+
Sbjct: 63  ESYETLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFES 122

Query: 119 NGTIE 123
           NG+IE
Sbjct: 123 NGSIE 127


>gi|260556563|ref|ZP_05828781.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Acinetobacter
           baumannii ATCC 19606]
 gi|260409822|gb|EEX03122.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Acinetobacter
           baumannii ATCC 19606]
          Length = 236

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 33/167 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   +G   VF R +GC L           +C +CDT +   +G  G R 
Sbjct: 20  ITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERL 65

Query: 66  NVDQLADLIEEQWITGEK-EGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           +++ + +       T EK +  Y  +TGGEPL Q + + L+Q L   GF++++ET+G   
Sbjct: 66  SLEHIIE-------TAEKYQTPYICVTGGEPLAQPNCLILLQGLCDAGFDVSLETSG--- 115

Query: 124 PPQGIDWICVSPKAGCDLKIK----GGQELKLVFPQVNVSPENYIGF 166
               +D   V P+    L +K    G +   L+    +++P + I F
Sbjct: 116 ---ALDVSRVDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKF 159


>gi|157414477|ref|YP_001481733.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157385441|gb|ABV51756.1| hypothetical protein C8J_0157 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747120|gb|ADN90390.1| Radical SAM domain protein [Campylobacter jejuni subsp. jejuni M1]
 gi|315931973|gb|EFV10926.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 247

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 7/123 (5%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF---CDTDFVGIQGTKGGR 64
           E FL++QGEG + G++A+F RF+GCN        ++S   +    CDT            
Sbjct: 5   ESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFKES 64

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNG 120
           Y      +L++      +      V+TGGEPL+  + P     IQ L K  FEI  E+NG
Sbjct: 65  YETLNANELLKRVIKLKQDFDPIVVITGGEPLIHYENPEFIKFIQMLLKNKFEIHFESNG 124

Query: 121 TIE 123
           +IE
Sbjct: 125 SIE 127


>gi|116048900|ref|YP_792299.1| radical activating enzyme [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584121|gb|ABJ10136.1| probable radical activating enzyme [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 264

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C +CDT +       GG  
Sbjct: 56  ITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAY----AFSGG-- 98

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           +V  L  ++E        + RY  +TGGEPL Q + + L++ L   G+E+++ET+G    
Sbjct: 99  DVVSLDAILER---VATYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG---- 151

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
              +D   V P+     DLK  G  E+
Sbjct: 152 --ALDVSRVDPRVSKVLDLKTPGSGEV 176


>gi|254674031|emb|CBA09815.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
          Length = 208

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 93/217 (42%), Gaps = 48/217 (22%)

Query: 14  QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73
           + + G  G  AVF R   CNL            C +CDTD++         + +  L+D+
Sbjct: 19  KAKAGTRGMPAVFVRLGKCNL-----------ACGWCDTDYL--------TFGMMSLSDI 59

Query: 74  IEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
           +           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG    P  ID++ 
Sbjct: 60  LG---CLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLNPAPPQIDYVA 116

Query: 133 VSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYIGF--DFER------FSLQP--MD 177
            SPKA    K     I+   E+++      V+  + + F  + ER      + L P   D
Sbjct: 117 TSPKACYAAKYENSCIETADEVRI------VADGDVLAFCENMERKIRAHHYYLSPCEQD 170

Query: 178 GPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
           G     +T   I      P     W+LSVQTHK+ GI
Sbjct: 171 GAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGI 207


>gi|168180208|ref|ZP_02614872.1| radical SAM domain protein [Clostridium botulinum NCTC 2916]
 gi|182669011|gb|EDT80987.1| radical SAM domain protein [Clostridium botulinum NCTC 2916]
          Length = 221

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 20/142 (14%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + E F+++ GEG   G++A+F RF+GCNL            C +CDT +      K  
Sbjct: 3   FKVVERFVSINGEGRCCGQLAIFIRFAGCNL-----------NCSYCDTLWA---NEKDV 48

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFEIAVETNGT 121
            Y V    D+ E       KE +   LTGGEPLLQ  +  L++ L+K +   + +ETNG+
Sbjct: 49  SYEVLSSKDIYE---YVKSKEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105

Query: 122 IEPPQGIDWICVSPKAGCDLKI 143
           I   + ++ I  SP    D K+
Sbjct: 106 ILLDEFLN-IENSPSFTMDYKL 126


>gi|148926329|ref|ZP_01810013.1| hypothetical protein Cj8486_0156c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145844721|gb|EDK21826.1| hypothetical protein Cj8486_0156c [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 247

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 7/123 (5%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF---CDTDFVGIQGTKGGR 64
           E FL++QGEG + G++A+F RF+GCN        ++S   +    CDT            
Sbjct: 5   ESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFKES 64

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNG 120
           Y      +L++      +      V+TGGEPL+  + P     IQ L K  FEI  E+NG
Sbjct: 65  YKTLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFESNG 124

Query: 121 TIE 123
           +IE
Sbjct: 125 SIE 127


>gi|153951290|ref|YP_001397418.1| radical SAM domain-containing protein [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152938736|gb|ABS43477.1| radical SAM domain protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 247

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 11/125 (8%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF---CDTDFVGIQGTKGGR 64
           E FL++QGEG + G++A+F RF+GCN        ++S   +    CDT  +    TK  +
Sbjct: 5   ESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDT--IRAVFTKDFK 62

Query: 65  YNVDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
            + + L+     + +   K+G     V+TGGEPL+  + P     IQ L K  FEI  E+
Sbjct: 63  ESYETLSTNELLKRVIKLKQGFNPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFES 122

Query: 119 NGTIE 123
           NG+IE
Sbjct: 123 NGSIE 127


>gi|145635038|ref|ZP_01790744.1| predicted organic radical activating enzyme [Haemophilus influenzae
           PittAA]
 gi|145267646|gb|EDK07644.1| predicted organic radical activating enzyme [Haemophilus influenzae
           PittAA]
          Length = 181

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 90/200 (45%), Gaps = 35/200 (17%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           +VF RF  CNL            C +CDT +   +     R++V Q+ + +         
Sbjct: 3   SVFVRFGKCNL-----------DCPWCDTPYNNFK-----RWSVSQILEKVRSF------ 40

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
             +  ++TGGEP +   +  L++     G+ +A+ETNG    P  ID+I  SPK+    K
Sbjct: 41  SSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLKAIPAQIDYIATSPKSLYAHK 100

Query: 143 -----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP--MDGP--FLEENTNLA-IS 190
                I    E+++V      S    I      + + L P  +DG    LE  T L  ++
Sbjct: 101 YEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSPCEIDGKMNLLETITLLGQLN 160

Query: 191 YCFQNPKWRLSVQTHKFIGI 210
                PKW+LS+QTHK IGI
Sbjct: 161 QRSNKPKWQLSLQTHKLIGI 180


>gi|253997441|ref|YP_003049505.1| Radical SAM domain-containing protein [Methylotenera mobilis JLW8]
 gi|253984120|gb|ACT48978.1| Radical SAM domain protein [Methylotenera mobilis JLW8]
          Length = 212

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 68/145 (46%), Gaps = 28/145 (19%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MKL  I EIF +LQGE    G   VF R +GC +           +C +CDT +    G+
Sbjct: 1   MKL-KIHEIFYSLQGESSRVGLPTVFVRLTGCPM-----------RCVYCDTAYAFSGGS 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
                   ++ D+I +     E    Y  +TGGEPL Q D   L++AL  +G+ +++ET 
Sbjct: 49  NM------EVEDIITK---VAEYATPYVTVTGGEPLAQKDCHVLLKALCDQGYSVSLETG 99

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIK 144
           G       ID   V P+    L +K
Sbjct: 100 G------AIDIAPVDPRVSVILDVK 118


>gi|184159135|ref|YP_001847474.1| organic radical activating protein [Acinetobacter baumannii ACICU]
 gi|213158261|ref|YP_002320312.1| radical SAM domain protein [Acinetobacter baumannii AB0057]
 gi|215482627|ref|YP_002324819.1| Radical SAM superfamily protein [Acinetobacter baumannii
           AB307-0294]
 gi|239501047|ref|ZP_04660357.1| Radical SAM superfamily protein [Acinetobacter baumannii AB900]
 gi|294836636|ref|ZP_06781319.1| Radical SAM superfamily protein [Acinetobacter sp. 6013113]
 gi|294841429|ref|ZP_06786112.1| Radical SAM superfamily protein [Acinetobacter sp. 6014059]
 gi|294860793|ref|ZP_06798562.1| Radical SAM superfamily protein [Acinetobacter sp. 6013150]
 gi|301346460|ref|ZP_07227201.1| Radical SAM superfamily protein [Acinetobacter baumannii AB056]
 gi|301512446|ref|ZP_07237683.1| Radical SAM superfamily protein [Acinetobacter baumannii AB058]
 gi|301594745|ref|ZP_07239753.1| Radical SAM superfamily protein [Acinetobacter baumannii AB059]
 gi|56131240|gb|AAV80241.1| putative organic radical activating enzyme [Acinetobacter
           baumannii]
 gi|183210729|gb|ACC58127.1| Organic radical activating enzyme [Acinetobacter baumannii ACICU]
 gi|213057421|gb|ACJ42323.1| radical SAM domain protein [Acinetobacter baumannii AB0057]
 gi|213988552|gb|ACJ58851.1| Radical SAM superfamily protein [Acinetobacter baumannii
           AB307-0294]
 gi|322509049|gb|ADX04503.1| organic radical activating protein [Acinetobacter baumannii 1656-2]
 gi|323519031|gb|ADX93412.1| organic radical activating protein [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 236

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 33/167 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   +G   VF R +GC L           +C +CDT +   +G  G R 
Sbjct: 20  ITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERL 65

Query: 66  NVDQLADLIEEQWITGEK-EGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           +++ + +       T EK +  Y  +TGGEPL Q + + L+Q L   GF++++ET+G   
Sbjct: 66  SLEHIIE-------TAEKYQTPYICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSG--- 115

Query: 124 PPQGIDWICVSPKAGCDLKIK----GGQELKLVFPQVNVSPENYIGF 166
               +D   V P+    L +K    G +   L+    +++P + I F
Sbjct: 116 ---ALDVSRVDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKF 159


>gi|169632733|ref|YP_001706469.1| putative radical activating enzyme [Acinetobacter baumannii SDF]
 gi|169151525|emb|CAP00292.1| putative radical activating enzyme [Acinetobacter baumannii]
          Length = 236

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 33/167 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   +G   VF R +GC L           +C +CDT +   +G  G R 
Sbjct: 20  ITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERL 65

Query: 66  NVDQLADLIEEQWITGEK-EGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           +++ + +       T EK +  Y  +TGGEPL Q + + L+Q L   GF++++ET+G   
Sbjct: 66  SLEHIIE-------TAEKYQTPYICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSG--- 115

Query: 124 PPQGIDWICVSPKAGCDLKIK----GGQELKLVFPQVNVSPENYIGF 166
               +D   V P+    L +K    G +   L+    +++P + I F
Sbjct: 116 ---ALDVSRVDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKF 159


>gi|293609845|ref|ZP_06692147.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828297|gb|EFF86660.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123071|gb|ADY82594.1| queuosine biosynthesis protein QueE [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 236

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 31/166 (18%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   +G   VF R +GC L           +C +CDT +   +G  G R+
Sbjct: 20  ITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERF 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           +++ + +         + +  Y  +TGGEPL Q + + L+Q L + GF++++ET+G    
Sbjct: 66  SLEHIIE------TATQFQTPYICVTGGEPLAQPNCLILLQRLCEAGFDVSLETSG---- 115

Query: 125 PQGIDWICVSPKAGCDLKIK----GGQELKLVFPQVNVSPENYIGF 166
              +D   V P+    L +K    G +   L+    +++P + I F
Sbjct: 116 --ALDVSRVDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKF 159


>gi|72536298|gb|AAZ73210.1| hypothetical protein [Escherichia coli]
          Length = 202

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 91/218 (41%), Gaps = 49/218 (22%)

Query: 24  AVFCRFSGC----------NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73
           A+F R  GC          + W   E   +S       T     +  K G  + + L  +
Sbjct: 2   AIFIRLQGCPVGCDWCDTKHTWEKLEDREVSLFSILAKTK----ESDKWGAASSEDLLAV 57

Query: 74  IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE---PPQGIDW 130
           I  Q  T     R+ V+TGGEP +   +PL   L K GF   +ET+GT E    P    W
Sbjct: 58  IGRQGYTA----RHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNT--W 111

Query: 131 ICVSPKAGCDLKIKGGQE-LKLVFPQVNVSPENYIG--FDFERF---------------S 172
           + VSPK    L ++GG E L     + N   ++ +G   D E                 +
Sbjct: 112 VTVSPK----LNMRGGYEVLSQALERAN-EIKHPVGRVRDIEALDELLATLTDDKPRVIA 166

Query: 173 LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 167 LQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 201


>gi|313105862|ref|ZP_07792125.1| putative radical activating enzyme [Pseudomonas aeruginosa 39016]
 gi|310878627|gb|EFQ37221.1| putative radical activating enzyme [Pseudomonas aeruginosa 39016]
          Length = 215

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C +CDT +       GG  
Sbjct: 7   ITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAY----AFSGG-- 49

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           +V  L  ++E        + RY  +TGGEPL Q + + L++ L   G+E+++ET+G ++ 
Sbjct: 50  DVVSLDAILER---VATYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSGALDV 106

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
            +      V P+     DLK  G  E+
Sbjct: 107 SR------VDPRVSKVLDLKTPGSGEV 127


>gi|238754504|ref|ZP_04615859.1| hypothetical protein yruck0001_24400 [Yersinia ruckeri ATCC 29473]
 gi|238707333|gb|EEP99695.1| hypothetical protein yruck0001_24400 [Yersinia ruckeri ATCC 29473]
          Length = 170

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 62/142 (43%), Gaps = 21/142 (14%)

Query: 85  GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP-QGIDWICVSPKAG----- 138
            R+ V+TGGEP +    PL   L + GF   +ET+GT E       W+ VSPK       
Sbjct: 33  ARHVVITGGEPCIYDLSPLTTLLEQEGFSCQIETSGTHEVHCSATTWVTVSPKVNMRGGL 92

Query: 139 --CDLKIKGGQELKLVFPQVNVSPENYIGFDFERF--------SLQPMDGPFLEENTNLA 188
              D  +    E+K   P   +     +    ER         +LQP+     EE T L 
Sbjct: 93  TVLDQALIRADEIK--HPVGRIRDIEALDILLERLHDDKARIIALQPISQK--EEATRLC 148

Query: 189 ISYCFQNPKWRLSVQTHKFIGI 210
           I  C     WRLS+QTHK++ I
Sbjct: 149 IETCIAR-NWRLSMQTHKYLNI 169


>gi|317473656|ref|ZP_07932945.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA]
 gi|316898946|gb|EFV20971.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA]
          Length = 173

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 19/124 (15%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M+++ I E F+++ GEG  AGR+++F R  GCNL            C +CDT +   +  
Sbjct: 1   MEVFKIAESFVSINGEGKKAGRLSMFIRLRGCNL-----------NCSYCDTKWAISKKG 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA--LNKRGFEIAVET 118
           +       +++ +++E  +          LTGGEPLL  ++  +    L+    E+ +ET
Sbjct: 50  EAELMTAAEVSQMVKESGVD------LVTLTGGEPLLDENISELIGGILSLPKMELEIET 103

Query: 119 NGTI 122
           NG+I
Sbjct: 104 NGSI 107


>gi|296390666|ref|ZP_06880141.1| radical activating enzyme [Pseudomonas aeruginosa PAb1]
          Length = 215

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C +CDT +       GG  
Sbjct: 7   ITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAY----AFSGG-- 49

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           +V  L  ++E        + RY  +TGGEPL Q + + L++ L   G+E+++ET+G ++ 
Sbjct: 50  DVVSLDAILER---VATYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSGALDV 106

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
            +      V P+     DLK  G  E+
Sbjct: 107 SR------VDPRVSKVLDLKTPGSGEV 127


>gi|320105235|ref|YP_004180826.1| Radical SAM domain-containing protein [Isosphaera pallida ATCC
           43644]
 gi|319752517|gb|ADV64277.1| Radical SAM domain protein [Isosphaera pallida ATCC 43644]
          Length = 293

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 17/119 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E++ ++QGEG  AG   VF R + C+L           +C +CDT    +   +GG +
Sbjct: 81  LHEVYRSIQGEGTWAGLPCVFVRLTACHL-----------RCVYCDTPHAFVF-REGGDF 128

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
            ++ +   + E      + G    +TGGEPLLQ + +PL+ AL   GFE+ +ET+G+++
Sbjct: 129 TIEAIVARVAEL----AEPGGLVEVTGGEPLLQPEALPLMTALADAGFEVLLETSGSLD 183


>gi|15596172|ref|NP_249666.1| radical activating enzyme [Pseudomonas aeruginosa PAO1]
 gi|254245258|ref|ZP_04938580.1| hypothetical protein PA2G_06150 [Pseudomonas aeruginosa 2192]
 gi|9946883|gb|AAG04364.1|AE004531_1 probable radical activating enzyme [Pseudomonas aeruginosa PAO1]
 gi|126198636|gb|EAZ62699.1| hypothetical protein PA2G_06150 [Pseudomonas aeruginosa 2192]
          Length = 264

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C +CDT +       GG  
Sbjct: 56  ITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAY----AFSGG-- 98

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           +V  L  + E        + RY  +TGGEPL Q + + L++ L   G+E+++ET+G ++ 
Sbjct: 99  DVVSLDAIFER---VAAYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSGALDV 155

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
            +      V P+     DLK  G  E+
Sbjct: 156 SR------VDPRVSKVLDLKTPGSGEV 176


>gi|257077184|ref|ZP_05571545.1| ATP binding cassette transporter, ExsD protein related [Ferroplasma
           acidarmanus fer1]
          Length = 229

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 17/122 (13%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +K+Y I EIFL++QGEG ++G   VF R   CNL           +C +CDT +   +G 
Sbjct: 14  LKMY-INEIFLSIQGEGLYSGEKMVFIRTEYCNL-----------RCSWCDTKYSFYEGK 61

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           +    ++D++ +    + I       +  LTGGEPLLQ D+ ++       + I +ET+G
Sbjct: 62  E---MSIDEIVE--SARNINSGHGASWICLTGGEPLLQKDISVLVDRLSEEYNILLETSG 116

Query: 121 TI 122
           ++
Sbjct: 117 SL 118


>gi|288818575|ref|YP_003432923.1| radical SAM domain protein [Hydrogenobacter thermophilus TK-6]
 gi|288787975|dbj|BAI69722.1| radical SAM domain protein [Hydrogenobacter thermophilus TK-6]
 gi|308752166|gb|ADO45649.1| Radical SAM domain protein [Hydrogenobacter thermophilus TK-6]
          Length = 218

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 100/226 (44%), Gaps = 39/226 (17%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           SI EI+ ++QGEG   G+  +F RF GCNL           +C +CD            R
Sbjct: 13  SINEIYPSVQGEGLLIGKPCLFVRFQGCNL-----------RCPWCDEP----SALSFKR 57

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI- 122
            N D L +L++E     +K   + VLTGGEP  + ++  L+Q L  RG+ + +ETNGT+ 
Sbjct: 58  ANTD-LKELLQELQKYPQK---HVVLTGGEPFAEPNLHLLVQELLCRGYSVQIETNGTLW 113

Query: 123 -----EPPQGIDWICVSPKAGCDLKIK-----GGQELKLVFPQ---VNV-SPENYIGFDF 168
                E    +   C SPK   D  +        +ELK V       NV     ++ F  
Sbjct: 114 NENLREVVSQVHITC-SPKGVADWYVHPAVLSSAKELKFVVDHELCYNVIKRREFMPFLE 172

Query: 169 ERF-SLQP--MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           E    LQP      FL++   L      +    R+  Q HK IG++
Sbjct: 173 EGLVVLQPEGNKTKFLQKALELQNLLLREGYTVRVVPQMHKLIGLK 218


>gi|42521688|ref|NP_967068.1| radical activating enzyme [Bdellovibrio bacteriovorus HD100]
 gi|39574218|emb|CAE77722.1| radical activating enzyme [Bdellovibrio bacteriovorus HD100]
          Length = 212

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 21/120 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF ++QGE  + G   VF R + CNL           +C +CDT +   +G   
Sbjct: 1   MLKINEIFYSIQGETTYVGCPTVFVRLTACNL-----------RCTYCDTKYSYYEG--- 46

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
               +  L  +I E  I   K    C+ TGGEPLLQ +V  L++ L  +G+ +++ET+G+
Sbjct: 47  ---EMQTLEAIIAE--IDSHKAPNVCI-TGGEPLLQKEVHTLMKTLCDKGYLVSLETSGS 100


>gi|218893054|ref|YP_002441923.1| putative radical activating enzyme [Pseudomonas aeruginosa LESB58]
 gi|218773282|emb|CAW29094.1| probable radical activating enzyme [Pseudomonas aeruginosa LESB58]
          Length = 264

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C +CDT +       GG  
Sbjct: 56  ITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAY----AFSGG-- 98

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           +V  L  + E        + RY  +TGGEPL Q + + L++ L   G+E+++ET+G ++ 
Sbjct: 99  DVVSLDAIFER---VAAYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSGALDV 155

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
            +      V P+     DLK  G  E+
Sbjct: 156 SR------VDPRVSKVLDLKTPGSGEV 176


>gi|254239323|ref|ZP_04932646.1| hypothetical protein PACG_05520 [Pseudomonas aeruginosa C3719]
 gi|126171254|gb|EAZ56765.1| hypothetical protein PACG_05520 [Pseudomonas aeruginosa C3719]
          Length = 264

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C +CDT +       GG  
Sbjct: 56  ITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAY----AFSGG-- 98

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           +V  L  + E        + RY  +TGGEPL Q + + L++ L   G+E+++ET+G ++ 
Sbjct: 99  DVVSLDAIFER---VAAYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSGALDV 155

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
            +      V P+     DLK  G  E+
Sbjct: 156 SR------VDPRVSKVLDLKTPGSGEV 176


>gi|110833622|ref|YP_692481.1| radical activating enzyme [Alcanivorax borkumensis SK2]
 gi|110646733|emb|CAL16209.1| radical activating enzyme [Alcanivorax borkumensis SK2]
          Length = 213

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF +LQGE    GR  VF R +GC             +C +CDT++    G K    
Sbjct: 5   LTEIFHSLQGESRTVGRPTVFVRLTGC-----------PQRCVWCDTEYAFSGGEKWS-- 51

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
               LA ++EE    G    +Y  +TGGEPL Q   +PL++ L   G+++++ET G ++
Sbjct: 52  ----LAAILEEVAALG---AQYVTVTGGEPLAQPSCLPLLKTLCDEGYQVSLETGGAMD 103


>gi|49082982|gb|AAT50891.1| PA0975 [synthetic construct]
          Length = 265

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C +CDT +       GG  
Sbjct: 56  ITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAY----AFSGG-- 98

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           +V  L  + E        + RY  +TGGEPL Q + + L++ L   G+E+++ET+G ++ 
Sbjct: 99  DVVSLDAIFER---VAAYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSGALDV 155

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
            +      V P+     DLK  G  E+
Sbjct: 156 SR------VDPRVSKVLDLKTPGSGEV 176


>gi|15896859|ref|NP_350208.1| MoaA family Fe-S oxidoreductase [Clostridium acetobutylicum ATCC
           824]
 gi|15026725|gb|AAK81548.1|AE007858_9 Fe-S oxidoreductase of MoaA family [Clostridium acetobutylicum ATCC
           824]
 gi|325511033|gb|ADZ22669.1| Fe-S oxidoreductase of MoaA family [Clostridium acetobutylicum EA
           2018]
          Length = 221

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 19/121 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y + E F+++ GEG  +G+++VF RF+GCNL            C +CDT +   +  K  
Sbjct: 3   YKVVEKFVSINGEGLKSGQLSVFIRFAGCNL-----------NCNYCDTKWANEKDVKYT 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALN-KRGFEIAVETNGT 121
                ++   I+E   TG K      LTGGEPLLQ   V L+  L+      + +ETNG+
Sbjct: 52  LMTEKEILSYIKE---TGVKN---VTLTGGEPLLQDGIVELLNLLSLDSTLRVEIETNGS 105

Query: 122 I 122
           +
Sbjct: 106 V 106


>gi|150017397|ref|YP_001309651.1| radical SAM domain-containing protein [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903862|gb|ABR34695.1| Radical SAM domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 222

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 19/122 (15%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +++I E FL++ GEG  +G +A F RF GCNL           +C +CDT +   +    
Sbjct: 1   MFNIIEKFLSIDGEGPTSGELATFIRFQGCNL-----------RCSWCDTTYSWDKENTS 49

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFEIAVETNG 120
                +++   I+E  +T         LTGGEPL+Q ++  L+  LN     ++ +ETNG
Sbjct: 50  EVLTAEEIYKYIKENKVTN------VTLTGGEPLIQKNIHELLGLLNSDDNLKVHIETNG 103

Query: 121 TI 122
            +
Sbjct: 104 AV 105


>gi|326388331|ref|ZP_08209927.1| radical SAM family protein [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207063|gb|EGD57884.1| radical SAM family protein [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 248

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 70/149 (46%), Gaps = 34/149 (22%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           E+F +LQGEG   GR +VF R S CNL            CR+CDT +   + +   R + 
Sbjct: 14  ELFASLQGEGASLGRPSVFVRLSRCNL-----------ACRWCDTAYTW-RFSGDNRPHR 61

Query: 68  DQLADLIEEQWITGEKEGRYC-----------VLTGGEPLLQVD-----VPLIQALNKRG 111
           D +A       IT + EG              V+TGGEPLLQ       +  ++A N+  
Sbjct: 62  DDIAFERTANQITAD-EGDIATRILAFGVPRLVVTGGEPLLQAPALARMIAAVRAGNE-A 119

Query: 112 FEIAVETNGTIEPPQGIDWIC----VSPK 136
             I +ETNG++ P   +D +     VSPK
Sbjct: 120 MHIEIETNGSVAPTPALDALIDQYNVSPK 148


>gi|21243865|ref|NP_643447.1| radical activating enzyme [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109466|gb|AAM37983.1| radical activating enzyme [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 227

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIFL+LQGE   AG   VF R +GC L           +C +CDT +    G  G  +
Sbjct: 20  ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCHYCDTAY-AFHG--GQWH 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           ++D +   +    +      R+  +TGGEPL Q   + L+Q L   GF++++ET+G ++
Sbjct: 66  DIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGFDVSLETSGALD 118


>gi|291612993|ref|YP_003523150.1| radical SAM domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291583105|gb|ADE10763.1| Radical SAM domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 218

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 22/125 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G   VF R +GC L           +C +CDT +    G      
Sbjct: 11  ISEIFYSLQGETSRVGLPTVFVRLTGCPL-----------RCSYCDTAYAFTGGQSM--- 56

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
              QL+ +++E         RY  +TGGEPL Q + + L++AL   G+E+++ET G ++ 
Sbjct: 57  ---QLSAIMDE---VASYAPRYVTVTGGEPLAQKNCLFLLRALCDAGYEVSLETGGALD- 109

Query: 125 PQGID 129
             G+D
Sbjct: 110 VSGVD 114


>gi|30248245|ref|NP_840315.1| radical activating enzyme [Nitrosomonas europaea ATCC 19718]
 gi|30180130|emb|CAD84132.1| Radical activating enzymes [Nitrosomonas europaea ATCC 19718]
          Length = 211

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 21/122 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGE    G   VF R +GC L           +C +CDT +       G
Sbjct: 1   MLRITEIFYSLQGETSRMGLPTVFVRLTGCPL-----------RCGYCDTGY----AFSG 45

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
           G+     +++++ E         RY  +TGGEPL Q D + L+ AL  RG+ +++ET+G 
Sbjct: 46  GKSM--SISEIMGE---VASFSPRYVTVTGGEPLAQADSLVLLAALCDRGYSVSLETSGA 100

Query: 122 IE 123
           ++
Sbjct: 101 LD 102


>gi|295695132|ref|YP_003588370.1| Radical SAM domain protein [Bacillus tusciae DSM 2912]
 gi|295410734|gb|ADG05226.1| Radical SAM domain protein [Bacillus tusciae DSM 2912]
          Length = 218

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 27/142 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E+F ++QGE    G   VF RF+GCNL           +C +CDT +   +GT   R 
Sbjct: 3   LNELFFSIQGESSSMGLPTVFVRFTGCNL-----------RCSYCDTTYAYFEGT---RT 48

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ---VDVPLIQALNKRGFEIAVETNGTI 122
             +++   I+E  +      R   LTGGEPL+Q       L+  L    +E+++ET+G+I
Sbjct: 49  TPEEIFRQIQEYGV------RRVCLTGGEPLIQPREELQQLLDLLGGNNYEVSIETDGSI 102

Query: 123 EPPQGIDWICVSPKAGCDLKIK 144
           +    I+ + + PK    L IK
Sbjct: 103 D----IERVKLRPKQRFILDIK 120


>gi|329121407|ref|ZP_08250032.1| radical SAM domain protein [Dialister micraerophilus DSM 19965]
 gi|327469697|gb|EGF15164.1| radical SAM domain protein [Dialister micraerophilus DSM 19965]
          Length = 226

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 19/120 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-VGIQGTKG 62
           + I EIF +++GEG   G +A+F R + CNL           +C +CDT + + ++ TK 
Sbjct: 11  FHIVEIFDSIEGEGKRTGYMAIFVRLASCNL-----------RCTYCDTSYALTLKDTKE 59

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                + +  +    W       +    TGGEP+L     + + L K G+EI +ET+G+I
Sbjct: 60  ILSEKELIEKIHSYPW-------KKITFTGGEPMLHPLQNICETLGKEGYEINIETSGSI 112


>gi|313891412|ref|ZP_07825028.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Dialister microaerophilus UPII 345-E]
 gi|313120187|gb|EFR43363.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Dialister microaerophilus UPII 345-E]
          Length = 226

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 19/120 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-VGIQGTKG 62
           + I EIF +++GEG   G +A+F R + CNL           +C +CDT + + ++ TK 
Sbjct: 11  FHIVEIFDSIEGEGKRTGYMAIFVRLASCNL-----------RCTYCDTSYALTLKDTKE 59

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                + +  +    W       +    TGGEP+L     + + L K G+EI +ET+G+I
Sbjct: 60  ILSEKELIEKIHSYPW-------KKITFTGGEPMLHPLQNICETLGKEGYEINIETSGSI 112


>gi|148652703|ref|YP_001279796.1| radical SAM domain-containing protein [Psychrobacter sp. PRwf-1]
 gi|148571787|gb|ABQ93846.1| Radical SAM domain protein [Psychrobacter sp. PRwf-1]
          Length = 245

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 23/119 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF +LQGE   AG   VF R +GC L           +C +CDT +     T G R 
Sbjct: 23  MTEIFYSLQGEALTAGLPTVFVRLTGCPL-----------RCVYCDTTY---SFTGGERL 68

Query: 66  NVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           +++  +AD+        +   +   LTGGEPL Q + +PL+Q L   G+EI++ET G +
Sbjct: 69  SLEAIMADI-------AQYPCKRICLTGGEPLAQPNAIPLMQRLLDEGYEISLETAGAL 120


>gi|71909659|ref|YP_287246.1| radical SAM family protein [Dechloromonas aromatica RCB]
 gi|71849280|gb|AAZ48776.1| Radical SAM [Dechloromonas aromatica RCB]
          Length = 212

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G   VF R +GC L           +C +CDT +    G      
Sbjct: 5   ITEIFYSLQGEASRVGLPTVFVRLTGCPL-----------RCSWCDTTYSFTGGEAATVE 53

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           +V  LA++        +   R   +TGGEPL Q D +PL+ AL   G+++++ET+G ++
Sbjct: 54  SV--LAEV-------AKYPARQVCVTGGEPLSQKDCLPLLAALCNAGYDVSLETSGALD 103


>gi|325923406|ref|ZP_08185071.1| organic radical activating enzyme [Xanthomonas gardneri ATCC 19865]
 gi|325546121|gb|EGD17310.1| organic radical activating enzyme [Xanthomonas gardneri ATCC 19865]
          Length = 227

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIFL+LQGE   AG   VF R +GC L           +C +CDT +    G  G  +
Sbjct: 20  ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCHYCDTAY-AFHG--GEWH 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           ++D +   +    +      R+  +TGGEPL Q   + L+Q L   GF++++ET+G ++
Sbjct: 66  DIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGFDVSLETSGALD 118


>gi|77163686|ref|YP_342211.1| radical SAM domain-containing protein [Nitrosococcus oceani ATCC
           19707]
 gi|254436167|ref|ZP_05049674.1| radical SAM domain protein, putative [Nitrosococcus oceani AFC27]
 gi|76882000|gb|ABA56681.1| Radical SAM domain protein [Nitrosococcus oceani ATCC 19707]
 gi|207089278|gb|EDZ66550.1| radical SAM domain protein, putative [Nitrosococcus oceani AFC27]
          Length = 213

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 23/125 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK   I EIF +LQGE    G    F R +GC L           +C +CDT++      
Sbjct: 1   MKRLRITEIFYSLQGEARSVGWPTAFVRLTGCPL-----------RCHYCDTEY----AF 45

Query: 61  KGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
           +GGR+  +D + D + E  +      R+  +TGGEPL Q   + L+  L   G+E+++ET
Sbjct: 46  QGGRWMALDGILDAVAEFGV------RHVTVTGGEPLAQSACLGLLTRLCDAGYEVSLET 99

Query: 119 NGTIE 123
           +G ++
Sbjct: 100 SGALD 104


>gi|302035630|ref|YP_003795952.1| putative radical-activating enzyme, radical SAM superfamily
           [Candidatus Nitrospira defluvii]
 gi|300603694|emb|CBK40025.1| putative Radical-activating enzyme, radical SAM superfamily
           [Candidatus Nitrospira defluvii]
          Length = 212

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 61/125 (48%), Gaps = 27/125 (21%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + EIF ++QGE  +AGR  VF R +GC L           +C +CDT +       G
Sbjct: 1   MVKVTEIFHSIQGESTYAGRPCVFVRLTGCPL-----------RCTWCDTAY----AFYG 45

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVL---TGGEPLLQ-VDVPLIQALNKRGFEIAVET 118
           GR       DL  +  I  +     C L   TGGEPL Q   +PL+  L   GFE+ VET
Sbjct: 46  GR-------DLTIDD-IVNQVRAFSCDLVEVTGGEPLSQPASLPLLTRLCDEGFEVLVET 97

Query: 119 NGTIE 123
           +G IE
Sbjct: 98  SGAIE 102


>gi|226328670|ref|ZP_03804188.1| hypothetical protein PROPEN_02565 [Proteus penneri ATCC 35198]
 gi|225203403|gb|EEG85757.1| hypothetical protein PROPEN_02565 [Proteus penneri ATCC 35198]
          Length = 152

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 23/154 (14%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLWSGREQDRLSAQCRFCDTD 53
           Y I E+F TLQGEG   G  A+F R  GC          + W   ++ ++       D  
Sbjct: 3   YPINEVFQTLQGEGVFTGVPALFVRLQGCPVGCSWCDTKHTWEKEDEKKV----LLGDIP 58

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
               +    G  +V Q+  L ++Q  +     ++ V+TGGEP L    PL + L + GF 
Sbjct: 59  IKTQESDTWGEASVAQILSLFQQQGYS----AKHVVITGGEPCLYDLRPLTEGLEQAGFA 114

Query: 114 IAVETNGTIEPP-QGIDWICVSPKAGCDLKIKGG 146
             +ET+GT +       W+ +SPK G    +KGG
Sbjct: 115 CQIETSGTHDILCSEKTWVTLSPKVG----MKGG 144


>gi|289548016|ref|YP_003473004.1| radical SAM protein [Thermocrinis albus DSM 14484]
 gi|289181633|gb|ADC88877.1| Radical SAM domain protein [Thermocrinis albus DSM 14484]
          Length = 219

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 99/225 (44%), Gaps = 38/225 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EI+ +LQGEG   G  +VF R  GCNL           +C +CD      +    G  
Sbjct: 14  VSEIYPSLQGEGLLVGTPSVFVRLQGCNL-----------RCPWCDQP----ESLHPGGG 58

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124
            +  + D+I +     E   R+ V+TGGEP  Q  +  L++ L K GF + +ETNGT+  
Sbjct: 59  ALMSVEDVIGK---VREYPHRHVVITGGEPFTQSFLTLLVEELLKEGFSVQIETNGTLW- 114

Query: 125 PQGID------WICVSPKAGCDLKIKG-----GQELKLVFPQ-----VNVSPENYIGFDF 168
            +G+D       I +SPK      +        +ELK V        + + P      + 
Sbjct: 115 QKGMDTLASHIHITLSPKGVASWFVHPKVLLYARELKWVVDHLLTLDIILMPSFRRFLEE 174

Query: 169 ERFSLQPMDGP--FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           ER  LQP      FL++  +L         + R+  Q HK +G++
Sbjct: 175 ERVVLQPEGNKEIFLQKALSLQEELLSLGYRVRVLPQLHKLLGLK 219


>gi|149919125|ref|ZP_01907609.1| hypothetical protein PPSIR1_35157 [Plesiocystis pacifica SIR-1]
 gi|149820055|gb|EDM79476.1| hypothetical protein PPSIR1_35157 [Plesiocystis pacifica SIR-1]
          Length = 261

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 21/134 (15%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           ++E F+++QGEG   G  + F R SGCNL           +C +CDT        +G R 
Sbjct: 20  VQERFVSIQGEGSLVGVRSSFVRVSGCNL-----------RCVWCDTPRTS-WAPEGERA 67

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEP 124
           ++D L D     W     + R+ VLTGGEPLL      L   L   G  + +ET G++  
Sbjct: 68  SLDALVD-----WCGAPGQPRHVVLTGGEPLLFPACAELSARLRAAGHHLTIETAGSLW- 121

Query: 125 PQGI--DWICVSPK 136
            +G+  D + +SPK
Sbjct: 122 CEGVEADLMSISPK 135


>gi|88705614|ref|ZP_01103324.1| radical activating enzyme [Congregibacter litoralis KT71]
 gi|88700127|gb|EAQ97236.1| radical activating enzyme [Congregibacter litoralis KT71]
          Length = 226

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 21/118 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G   VF R +GC L           +C +CDT++    G  G   
Sbjct: 18  ITEIFYSLQGEARTVGLPTVFVRLTGCPL-----------RCLYCDTEY-AFHG--GEIM 63

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           +++ +AD +         +  Y  +TGGEPL Q + +PL+  L  +G+E+++ET+G +
Sbjct: 64  SLEHIADQV------AAHKPAYVTVTGGEPLAQPNCLPLLSRLCDQGYEVSLETSGAM 115


>gi|225874258|ref|YP_002755717.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196]
 gi|225791949|gb|ACO32039.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196]
          Length = 226

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 21/115 (18%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           EI+ ++QGE   AGR  +F R +GCNL           +C +CD+++     T G  ++ 
Sbjct: 5   EIYKSVQGESSFAGRPCIFVRLAGCNL-----------RCSWCDSEYT---FTGGEAFSD 50

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           D++   IE          R    TGGEPLLQ    +P ++ L   G+E+ +ET+G
Sbjct: 51  DEILARIE-----ALAPVRLVEFTGGEPLLQAKQLIPFMERLLAAGYELMIETSG 100


>gi|29653453|ref|NP_819145.1| radical SAM domain-containing protein [Coxiella burnetii RSA 493]
 gi|153207177|ref|ZP_01945956.1| radical SAM domain protein [Coxiella burnetii 'MSU Goat Q177']
 gi|154707102|ref|YP_001425323.1| queuosine biosynthesis protein [Coxiella burnetii Dugway 5J108-111]
 gi|161830218|ref|YP_001596061.1| radical SAM domain-containing protein [Coxiella burnetii RSA 331]
 gi|165918380|ref|ZP_02218466.1| radical SAM domain protein [Coxiella burnetii RSA 334]
 gi|212213378|ref|YP_002304314.1| queuosine biosynthesis protein [Coxiella burnetii CbuG_Q212]
 gi|212219428|ref|YP_002306215.1| queuosine biosynthesis protein [Coxiella burnetii CbuK_Q154]
 gi|29540715|gb|AAO89659.1| queuosine biosynthesis protein [Coxiella burnetii RSA 493]
 gi|120576838|gb|EAX33462.1| radical SAM domain protein [Coxiella burnetii 'MSU Goat Q177']
 gi|154356388|gb|ABS77850.1| queuosine biosynthesis protein [Coxiella burnetii Dugway 5J108-111]
 gi|161762085|gb|ABX77727.1| radical SAM domain protein [Coxiella burnetii RSA 331]
 gi|165917886|gb|EDR36490.1| radical SAM domain protein [Coxiella burnetii RSA 334]
 gi|212011788|gb|ACJ19169.1| queuosine biosynthesis protein [Coxiella burnetii CbuG_Q212]
 gi|212013690|gb|ACJ21070.1| queuosine biosynthesis protein [Coxiella burnetii CbuK_Q154]
          Length = 213

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 29/152 (19%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    I EIF +LQGE    G   VF R +GC L           +C +CDT +      
Sbjct: 1   MDKLRITEIFYSLQGETKTVGLPTVFVRLTGCPL-----------RCHYCDTPY----AF 45

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETN 119
            GG+  +  L D++ +       + RY  +TGGEPL Q   +PL+Q L    + +++ET+
Sbjct: 46  YGGQSLL--LEDVVHQ---VASYQTRYVTVTGGEPLAQPACLPLLQRLCDLNYRVSLETS 100

Query: 120 GTIEPPQGIDWICVSPKA--GCDLKIKGGQEL 149
           G       +D   V P+     D+K  G +E+
Sbjct: 101 G------ALDISNVDPRVIKIVDVKTPGSKEM 126


>gi|254523566|ref|ZP_05135621.1| radical activating enzyme [Stenotrophomonas sp. SKA14]
 gi|219721157|gb|EED39682.1| radical activating enzyme [Stenotrophomonas sp. SKA14]
          Length = 233

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CDT +    GT    +
Sbjct: 26  ITEIFTSLQGEADTAGWPTVFVRLTGCPL-----------RCQYCDTAYAFHGGT---WW 71

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           ++D   D++ E    G    R+  +TGGEPL Q   + L+Q L   G ++++ET+G    
Sbjct: 72  DID---DIVAEVLAQGV---RHVCVTGGEPLAQKRCLVLLQKLCDAGMDVSLETSG---- 121

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
              +D   V P+     D+K  G  E+
Sbjct: 122 --ALDVSAVDPRVSRVVDIKTPGSAEV 146


>gi|299769138|ref|YP_003731164.1| Radical SAM superfamily protein [Acinetobacter sp. DR1]
 gi|298699226|gb|ADI89791.1| Radical SAM superfamily protein [Acinetobacter sp. DR1]
          Length = 236

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   +G   VF R +GC L           +C +CDT +   +G  G R+
Sbjct: 20  ITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERF 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           +++ + +         + +  Y  +TGGEPL Q + + L+Q L + GF++++ET+G ++
Sbjct: 66  SLEHIIE------TATQYQTPYICVTGGEPLAQPNCLILLQRLCEAGFDVSLETSGALD 118


>gi|325914192|ref|ZP_08176545.1| organic radical activating enzyme [Xanthomonas vesicatoria ATCC
           35937]
 gi|325539695|gb|EGD11338.1| organic radical activating enzyme [Xanthomonas vesicatoria ATCC
           35937]
          Length = 227

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIFL+LQGE   AG   VF R +GC L           +C +CDT +    G  G  +
Sbjct: 20  ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCNYCDTAY-AFHG--GQWH 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           ++D +   +    +      R+  +TGGEPL Q   + L+Q L   GF++++ET+G ++
Sbjct: 66  DIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGFDVSLETSGALD 118


>gi|330506424|ref|YP_004382852.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6]
 gi|328927232|gb|AEB67034.1| radical SAM domain protein [Methanosaeta concilii GP-6]
          Length = 185

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 66/144 (45%), Gaps = 34/144 (23%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           GR A+F R SGCNL            C  CDTD            +V +L   IE Q   
Sbjct: 2   GRPALFIRLSGCNL-----------NCEGCDTDL-----KPSLDLSVLELLKRIEGQ--- 42

Query: 81  GEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGI-DWIC---VS 134
               G+  ++TGGEP LQ++  V LI  L  RG EI +E+NGT   P  I + IC   VS
Sbjct: 43  ----GKRVIITGGEPTLQMNELVDLICRLYSRGMEIHIESNGTNTIPLDILEKICCAVVS 98

Query: 135 PKAGCDLKI-----KGGQELKLVF 153
           PK G D  +     K    LK V 
Sbjct: 99  PKRGSDFNLGFWANKSNVHLKFVL 122


>gi|194366888|ref|YP_002029498.1| Radical SAM domain-containing protein [Stenotrophomonas maltophilia
           R551-3]
 gi|194349692|gb|ACF52815.1| Radical SAM domain protein [Stenotrophomonas maltophilia R551-3]
          Length = 233

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 29/146 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CDT +    GT    +
Sbjct: 26  ITEIFTSLQGEADTAGWPTVFVRLTGCPL-----------RCQYCDTAYAFHGGT---WW 71

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           ++D   D++ E    G    R+  +TGGEPL Q   + L+Q L   G ++++ET+G    
Sbjct: 72  DID---DIVAEVLAQGV---RHVCVTGGEPLAQKRCLVLLQKLCDAGMDVSLETSG---- 121

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQE 148
              +D   V P+     D+K  G  E
Sbjct: 122 --ALDVSAVDPRVSRVVDIKTPGSAE 145


>gi|188577425|ref|YP_001914354.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521877|gb|ACD59822.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 213

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 21/124 (16%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    I EIFL+LQGE   AG   VF R +GC L           +C +CDT +      
Sbjct: 1   MPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCVYCDTAY----AF 45

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119
            GG ++   + D++ E    G    R+  +TGGEPL Q   + L+Q L   G+++++ET+
Sbjct: 46  HGGEWH--DIDDVLAEVATHGV---RHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETS 100

Query: 120 GTIE 123
           G ++
Sbjct: 101 GALD 104


>gi|114330319|ref|YP_746541.1| radical SAM domain-containing protein [Nitrosomonas eutropha C91]
 gi|114307333|gb|ABI58576.1| Radical SAM domain protein [Nitrosomonas eutropha C91]
          Length = 211

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 21/122 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + EIF +LQGE    G   VF R +GC L           +C +CDT +       G
Sbjct: 1   MLRVTEIFYSLQGETSRMGLPTVFIRLTGCPL-----------RCGYCDTSY----AFSG 45

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
           G     +  D+ E           Y  +TGGEPL Q D + L+ AL  RG+ +++ET+G 
Sbjct: 46  G-----ESMDISEIMRKVASFSPHYVTVTGGEPLAQADSLTLLTALCDRGYSVSLETSGA 100

Query: 122 IE 123
           ++
Sbjct: 101 LD 102


>gi|219850957|ref|YP_002465389.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
 gi|219545216|gb|ACL15666.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
          Length = 202

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 94/225 (41%), Gaps = 44/225 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIFL+LQGEG + G+  +F R SGCNL            C +CDT +     T G   
Sbjct: 3   ISEIFLSLQGEGVYQGKACIFIRLSGCNL-----------SCSWCDTRYA---CTLGEEM 48

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGE--PLLQVDVPLIQALNKRGFEIAVETNGTIE 123
             +Q+ + + E     E     C+ TGGE        +PL++AL  RG+ + +ETNGTI+
Sbjct: 49  TTEQVLERVSE-----ENCSLICI-TGGEPLLQQDQLLPLLKALEDRGYIVGIETNGTID 102

Query: 124 -------PPQGIDWICVSPKAGCDLK----IKGGQELKLVFPQVNVSPENYIGFDFERFS 172
                      +D  C S     DL     I+    +K V     V  +    +      
Sbjct: 103 FIASGEYASICMDVKCPSSGETSDLSLLEHIRVTDSVKFV-----VKDQQDCAYAESVIR 157

Query: 173 LQPMDGP------FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             P+ G       F  E T LA     ++      +Q HK IG++
Sbjct: 158 DHPIKGTIFFSPVFGSEYTALASFVLTRHLPVTFQMQLHKIIGVK 202


>gi|164686487|ref|ZP_02210515.1| hypothetical protein CLOBAR_00052 [Clostridium bartlettii DSM
           16795]
 gi|164604498|gb|EDQ97963.1| hypothetical protein CLOBAR_00052 [Clostridium bartlettii DSM
           16795]
          Length = 220

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 19/123 (15%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +++I E F+++ GEG  AG +A F RF GCNL           +C +CDT +   +    
Sbjct: 1   MFNIIEKFVSIDGEGPTAGELATFIRFQGCNL-----------RCSWCDTTYSFDKSEIT 49

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL--NKRGFEIAVETNG 120
              +  ++ D I+   ++         LTGGEPL Q ++  + +L  + +   + +ETNG
Sbjct: 50  EVLSAQEIYDYIKSTGVSN------VTLTGGEPLFQENINEVLSLLNDDKNLVVHIETNG 103

Query: 121 TIE 123
            I+
Sbjct: 104 AID 106


>gi|292490344|ref|YP_003525783.1| radical SAM protein [Nitrosococcus halophilus Nc4]
 gi|291578939|gb|ADE13396.1| Radical SAM domain protein [Nitrosococcus halophilus Nc4]
          Length = 213

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 70/151 (46%), Gaps = 29/151 (19%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK   I EIF +LQGE    G   VF R +GC L           +C +CDT++   QG 
Sbjct: 1   MKRLRITEIFHSLQGESRSVGWPTVFVRLTGCPL-----------RCHYCDTEY-AFQG- 47

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETN 119
            G    +D++   +       E   R+  +TGGEPL Q   + L+  L   G+E+++ET+
Sbjct: 48  -GTWMELDEILATV------AEFGARHVTVTGGEPLAQPACLELLTQLCDVGYEVSLETS 100

Query: 120 GTIEPPQGIDWICVSPKA--GCDLKIKGGQE 148
           G       +D   V P+     DLK  G  E
Sbjct: 101 G------ALDISAVDPRVVKVMDLKTPGSGE 125


>gi|262192386|ref|ZP_06050539.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae CT
           5369-93]
 gi|262031739|gb|EEY50324.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae CT
           5369-93]
          Length = 216

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 92/226 (40%), Gaps = 35/226 (15%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           +F T+QGEG   G  AVF R  GC +   W   +Q   +          + ++ +    +
Sbjct: 1   MFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLDSDQTSFSQILLKTSDAPTW 60

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
                 ++++     G  + ++ V+TGGEP +     L QA    G    +ET+GT E  
Sbjct: 61  CQASAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQIETSGTYEVC 119

Query: 126 QGID-WICVSPKAGC-------DLKIKGGQELKL-------------VFPQVNVSPENYI 164
              + W+ VSPK          D  ++   E+K              +  +  VS +  I
Sbjct: 120 ATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLARAQVSAQTAI 179

Query: 165 GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                  +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 180 -------ALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215


>gi|255020132|ref|ZP_05292202.1| Queuosine Biosynthesis QueE Radical SAM [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970425|gb|EET27917.1| Queuosine Biosynthesis QueE Radical SAM [Acidithiobacillus caldus
           ATCC 51756]
          Length = 213

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 72/154 (46%), Gaps = 31/154 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    + EIF +LQGE   +G  A F R +GC L           +C +CDT +      
Sbjct: 1   MSRLRVSEIFHSLQGETTASGVPATFVRLTGCPL-----------RCSYCDTAY----AF 45

Query: 61  KGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118
            GG + + DQ+   +       E++ R  V+TGGEPL Q  V  L+ AL   G E+ +ET
Sbjct: 46  HGGEWLDADQILARV------AERDNRLVVITGGEPLAQPAVHALMTALCDGGREVYLET 99

Query: 119 NGTIEPPQGIDWICVSPKAG--CDLKIKGGQELK 150
           +G +   +      V P+     DLK  G  EL+
Sbjct: 100 SGALSVAE------VDPRVVKILDLKSPGSGELE 127


>gi|285019180|ref|YP_003376891.1| organic radical activating enzyme protein [Xanthomonas albilineans
           GPE PC73]
 gi|283474398|emb|CBA16899.1| putative organic radical activating enzyme protein [Xanthomonas
           albilineans]
          Length = 225

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 27/140 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIFL+LQGE   AG   VF R +GC L           +C +CDT +    G  G  +
Sbjct: 18  LTEIFLSLQGEADSAGWPTVFVRLTGCPL-----------RCSYCDTAY-AFHG--GQWW 63

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           ++D +   +    +      R+  +TGGEPL Q   + L+Q+L   G+++++ET+G ++ 
Sbjct: 64  DIDAILAEVARHGV------RHVCVTGGEPLAQKRCLQLLQSLCDTGYDVSLETSGALDI 117

Query: 125 PQGIDWICVSPKAGCDLKIK 144
            +      V P+    L IK
Sbjct: 118 AE------VDPRVSRVLDIK 131


>gi|107100431|ref|ZP_01364349.1| hypothetical protein PaerPA_01001456 [Pseudomonas aeruginosa PACS2]
          Length = 215

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C +CDT +       GG  
Sbjct: 7   ITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAY----AFSGG-- 49

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           +V  L  + E        + RY  +TGGEPL Q + + L++ L   G+E+++ET+G ++ 
Sbjct: 50  DVVSLDAIFER---VAAYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSGALDV 106

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
            +      + P+     DLK  G  E+
Sbjct: 107 SR------IDPRVSKVLDLKTPGSGEV 127


>gi|169795077|ref|YP_001712870.1| putative radical activating enzyme [Acinetobacter baumannii AYE]
 gi|169148004|emb|CAM85867.1| putative radical activating enzyme [Acinetobacter baumannii AYE]
          Length = 236

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 33/167 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   +G   VF R +GC L           +C +CDT +   +G  G R 
Sbjct: 20  ITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERL 65

Query: 66  NVDQLADLIEEQWITGEK-EGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           +++ + +       T EK +  Y  +TGGEPL Q + + L+Q L    F++++ET+G   
Sbjct: 66  SLEHIIE-------TAEKYQTPYICVTGGEPLAQPNCLILLQRLCDASFDVSLETSG--- 115

Query: 124 PPQGIDWICVSPKAGCDLKIK----GGQELKLVFPQVNVSPENYIGF 166
               +D   V P+    L +K    G +   L+    +++P + I F
Sbjct: 116 ---ALDVSRVDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKF 159


>gi|91776688|ref|YP_546444.1| radical SAM family protein [Methylobacillus flagellatus KT]
 gi|91710675|gb|ABE50603.1| Radical SAM [Methylobacillus flagellatus KT]
          Length = 212

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 62/129 (48%), Gaps = 23/129 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGE    G   VF R +GC +           +C +CDT++      KG
Sbjct: 1   MLRIHEIFHSLQGESSRVGLPTVFVRLTGCPM-----------RCVYCDTEY----AFKG 45

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           G    +   D I EQ        RY  +TGGEPL Q    + L++ L   G+E+++ET G
Sbjct: 46  GS---NMTLDQIMEQ--VASYGARYVCVTGGEPLAQKKHCLELLRQLCDAGYEVSLETGG 100

Query: 121 TIEPPQGID 129
            I    G+D
Sbjct: 101 AI-ATDGVD 108


>gi|15607013|ref|NP_214395.1| hypothetical protein aq_2035 [Aquifex aeolicus VF5]
 gi|2984272|gb|AAC07798.1| hypothetical protein aq_2035 [Aquifex aeolicus VF5]
          Length = 219

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 86/182 (47%), Gaps = 35/182 (19%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTK 61
           L ++ E++ ++QGEG   G  +VF R  GCNL           +C +CD  + +   G K
Sbjct: 12  LIALNEVYESIQGEGLLVGLPSVFIRLQGCNL-----------RCPWCDQPEALSFSGRK 60

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
                  +L+ LI E     +   ++ V+TGGEP    ++P +++ L   G+ + +ETNG
Sbjct: 61  V------KLSSLINE---LKKFTAKHIVITGGEPFAHRELPFIVEFLLSEGYSVQIETNG 111

Query: 121 TI------EPPQGIDWICVSPKAGCDLKI-----KGGQELKLVFPQVNVSPENYIGFDFE 169
           T+      +  +GI   C SPK      +     K  +ELK V  +   S E     +FE
Sbjct: 112 TLWVEEMEKFAEGIHITC-SPKGVAKYYVHPKILKYAKELKFVVDK-EFSKEVLKKEEFE 169

Query: 170 RF 171
           RF
Sbjct: 170 RF 171


>gi|258646637|ref|ZP_05734106.1| putative sigma-54 dependent DNA-binding response regulator
           [Dialister invisus DSM 15470]
 gi|260404058|gb|EEW97605.1| putative sigma-54 dependent DNA-binding response regulator
           [Dialister invisus DSM 15470]
          Length = 219

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 19/120 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + EIF ++ GEG   G +AVF RF+GCN+           +C +CDT +   +     
Sbjct: 5   FPVAEIFDSIDGEGKRTGYMAVFVRFAGCNI-----------RCTYCDTAYALKESDAEE 53

Query: 64  RYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
               ++L   I    W       +    TGGEPLL     +   L + G+EI +ETNG +
Sbjct: 54  FLTKEELLGRIRSYPW-------KRITFTGGEPLLHPLQEICDILGEEGYEINIETNGAV 106


>gi|190575559|ref|YP_001973404.1| putative radical SAM-superfamily protein [Stenotrophomonas
           maltophilia K279a]
 gi|190013481|emb|CAQ47116.1| putative radical SAM-superfamily protein [Stenotrophomonas
           maltophilia K279a]
          Length = 233

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 29/146 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C++CDT +    GT    +
Sbjct: 26  ITEIFTSLQGEADTAGWPTVFVRLTGCPL-----------RCQYCDTAYAFHGGT---WW 71

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           ++D   D++ E    G    R+  +TGGEPL Q   + L+Q L   G ++++ET+G    
Sbjct: 72  DID---DIVAEVLAQGV---RHVCVTGGEPLAQKRCLVLLQKLCDAGMDVSLETSG---- 121

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQE 148
              +D   V P+     D+K  G  E
Sbjct: 122 --ALDVSAVDPRVSRVVDIKTPGSAE 145


>gi|322805868|emb|CBZ03433.1| queuosine Biosynthesis QueE Radical SAM [Clostridium botulinum
           H04402 065]
          Length = 221

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 20/142 (14%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + E  +++ GEG   G++A+F RF+GCNL            C +CDT +      K  
Sbjct: 3   FKVVERVVSINGEGRRCGQLAIFIRFAGCNL-----------NCSYCDTLWA---NEKDV 48

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFEIAVETNGT 121
            Y V    D+ E       KE +   LTGGEPLLQ  +  L++ L+K +   + +ETNG+
Sbjct: 49  PYEVLSSKDIYE---YIKSKEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105

Query: 122 IEPPQGIDWICVSPKAGCDLKI 143
           I   + ++ I  SP    D K+
Sbjct: 106 ILLDEFLN-IENSPSFTMDYKL 126


>gi|260551478|ref|ZP_05825662.1| radical SAM superfamily protein [Acinetobacter sp. RUH2624]
 gi|260405472|gb|EEW98965.1| radical SAM superfamily protein [Acinetobacter sp. RUH2624]
          Length = 236

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 23/120 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   +G   VF R +GC L           +C +CDT +   +G  G R 
Sbjct: 20  ITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERL 65

Query: 66  NVDQLADLIEEQWITGEK-EGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           +++ + +       T EK +  Y  +TGGEPL Q + + L+Q L   GF++++ET+G ++
Sbjct: 66  SLEHIIE-------TAEKYQTPYICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSGALD 118


>gi|71275793|ref|ZP_00652077.1| Radical SAM [Xylella fastidiosa Dixon]
 gi|71900392|ref|ZP_00682525.1| Radical SAM [Xylella fastidiosa Ann-1]
 gi|170730227|ref|YP_001775660.1| radical activating enzyme [Xylella fastidiosa M12]
 gi|71163371|gb|EAO13089.1| Radical SAM [Xylella fastidiosa Dixon]
 gi|71729824|gb|EAO31922.1| Radical SAM [Xylella fastidiosa Ann-1]
 gi|167965020|gb|ACA12030.1| radical activating enzyme [Xylella fastidiosa M12]
          Length = 217

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 23/120 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIFL+LQGE    G   VF R +GC L           +C++CDT +       GG +
Sbjct: 10  ISEIFLSLQGEANSVGWPTVFVRLTGCPL-----------RCQYCDTSY----AFHGGEW 54

Query: 66  -NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
            ++D + + +    +      R+  +TGGEPL Q   + L++ L   GFE+++ET+G ++
Sbjct: 55  RSIDTIVNEVRSYGV------RHVCVTGGEPLAQKRCLLLLEKLCDAGFEVSLETSGALD 108


>gi|313202056|ref|YP_004040714.1| radical sam domain-containing protein [Methylovorus sp. MP688]
 gi|312441372|gb|ADQ85478.1| Radical SAM domain protein [Methylovorus sp. MP688]
          Length = 212

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 71/153 (46%), Gaps = 30/153 (19%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MKL  I EIF +LQGE    G   VF R +GC +           +C +CDT +    G 
Sbjct: 1   MKL-RIHEIFHSLQGESSRVGLPTVFVRLTGCPM-----------RCVYCDTAY-AFHG- 46

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
            GG   +D   D++++     E    Y  +TGGEPL Q D   L+  L   G+ +++ET 
Sbjct: 47  -GGSMEID---DIMQK---VAEYGAHYVTVTGGEPLAQRDCHVLLTRLCDAGYSVSLETG 99

Query: 120 GTIEPPQGIDWICVSPKAGC--DLKIKGGQELK 150
           G       +D   V P+     D+K  G  EL+
Sbjct: 100 G------AMDIANVDPRVSVILDIKTPGSGELE 126


>gi|166712980|ref|ZP_02244187.1| radical activating enzyme [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 227

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIFL+LQGE   AG   VF R +GC L           +C +CDT +       GG +
Sbjct: 20  ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCVYCDTAY----AFHGGEW 64

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           +   + D++ E    G    R+  +TGGEPL Q   + L+Q L   G+++++ET+G ++
Sbjct: 65  H--DIDDVLAEVATHGV---RHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETSGALD 118


>gi|28198799|ref|NP_779113.1| radical activating enzyme [Xylella fastidiosa Temecula1]
 gi|182681498|ref|YP_001829658.1| radical SAM domain-containing protein [Xylella fastidiosa M23]
 gi|28056890|gb|AAO28762.1| radical activating enzyme [Xylella fastidiosa Temecula1]
 gi|182631608|gb|ACB92384.1| Radical SAM domain protein [Xylella fastidiosa M23]
 gi|307579952|gb|ADN63921.1| radical SAM domain-containing protein [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 217

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 23/120 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIFL+LQGE    G   VF R +GC L           +C++CDT +       GG +
Sbjct: 10  ISEIFLSLQGEANSVGWPTVFVRLTGCPL-----------RCQYCDTSY----AFHGGEW 54

Query: 66  -NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
            ++D + + +    +      R+  +TGGEPL Q   + L++ L   GFE+++ET+G ++
Sbjct: 55  RSIDTIVNEVRSYGV------RHVCVTGGEPLAQKRCLLLLEKLCDAGFEVSLETSGALD 108


>gi|262169329|ref|ZP_06037021.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae RC27]
 gi|262022142|gb|EEY40851.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae RC27]
 gi|327484035|gb|AEA78442.1| Queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae LMA3894-4]
          Length = 216

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 93/229 (40%), Gaps = 41/229 (17%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ-GTKG 62
           +F T+QGEG   G  AVF R  GC +   W   +Q  + L +      T F  I   T  
Sbjct: 1   MFETIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLDSD----QTSFSQILLKTND 56

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                   A  + +++     + ++ V+TGGEP +     L QA    G    +ET+GT 
Sbjct: 57  APTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQIETSGTY 116

Query: 123 EPPQGID-WICVSPKAG-------CDLKIKGGQELKL-------------VFPQVNVSPE 161
           E     + W+ VSPK          D  ++   E+K              +  +  VS +
Sbjct: 117 EVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLARAQVSAQ 176

Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             I       +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 177 TAI-------ALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215


>gi|94266661|ref|ZP_01290338.1| Radical SAM [delta proteobacterium MLMS-1]
 gi|93452708|gb|EAT03259.1| Radical SAM [delta proteobacterium MLMS-1]
          Length = 224

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 15/117 (12%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF ++QGE   AG   +F R +GCNL           +C +CD  +   +   G  Y
Sbjct: 9   LSEIFYSIQGESTLAGYPCLFIRLAGCNL-----------RCSYCDARYTYEE--PGQSY 55

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
           +++ +   + E    G +      +TGGEPLLQ  V PL+  L  RG ++ +ETNGT
Sbjct: 56  SLEGVLKAMAEVG-PGGRPVELVEITGGEPLLQEGVYPLLDVLLARGHQVLLETNGT 111


>gi|84623212|ref|YP_450584.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84367152|dbj|BAE68310.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 227

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIFL+LQGE   AG   VF R +GC L           +C +CDT +       GG +
Sbjct: 20  ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCVYCDTAY----AFHGGEW 64

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           +   + D++ E    G    R+  +TGGEPL Q   + L+Q L   G+++++ET+G ++
Sbjct: 65  H--DIDDVLAEVATHGV---RHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETSGALD 118


>gi|262278177|ref|ZP_06055962.1| radical SAM superfamily protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258528|gb|EEY77261.1| radical SAM superfamily protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 236

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   +G   VF R +GC L           +C +CDT +   +G  G R+
Sbjct: 20  ITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERF 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           +++ + +         + +  Y  +TGGEPL Q + + L+Q L + GF++++ET+G ++
Sbjct: 66  SLEHIIE------TATQFQTPYICVTGGEPLAQPNCLILLQRLCEAGFDVSLETSGALD 118


>gi|187735213|ref|YP_001877325.1| Radical SAM domain protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187425265|gb|ACD04544.1| Radical SAM domain protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 227

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +++   EIF ++QGEG   G   VF R +GCNL            C +CDT +       
Sbjct: 6   QIHGQPEIFHSIQGEGVSQGTPCVFLRLAGCNL-----------ACSWCDTAYSWNGTVP 54

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           G R   ++ A+L+           R  VLTGGEPL+Q               + +ETNGT
Sbjct: 55  GVRLAPEKAAELVLHY------PCRRLVLTGGEPLIQQKALPALLRLLPDHAVEMETNGT 108

Query: 122 IEP 124
           I P
Sbjct: 109 IMP 111


>gi|188990578|ref|YP_001902588.1| Putative radical activating enzyme [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732338|emb|CAP50530.1| Putative radical activating enzyme [Xanthomonas campestris pv.
           campestris]
          Length = 227

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIFL+LQGE   AG   VF R +GC L           +C +CDT +    G  G  +
Sbjct: 20  ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCTYCDTAY-AFHG--GEWH 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           ++D +   +    +      R+  +TGGEPL Q   + L+  L   GF++++ET+G ++
Sbjct: 66  DIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLALLHKLCDAGFDVSLETSGALD 118


>gi|94264593|ref|ZP_01288377.1| Radical SAM [delta proteobacterium MLMS-1]
 gi|93454947|gb|EAT05184.1| Radical SAM [delta proteobacterium MLMS-1]
          Length = 224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 15/117 (12%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF ++QGE   AG   +F R +GCNL           +C +CD  +   +   G  Y
Sbjct: 9   LSEIFYSIQGESTLAGYPCLFIRLAGCNL-----------RCSYCDARYTYEE--PGQSY 55

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
           +++ +   + E    G +      +TGGEPLLQ  V PL+  L  RG ++ +ETNGT
Sbjct: 56  SLEGVLKAMAEVG-PGGRPVELVEITGGEPLLQEGVYPLLDVLLARGHQVLLETNGT 111


>gi|297568917|ref|YP_003690261.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296924832|gb|ADH85642.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 241

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 19/118 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF +LQGE  HAG   +F R +GCNL           +C +CD  +   +   G   
Sbjct: 31  VAEIFYSLQGESSHAGYPCIFVRLAGCNL-----------RCVYCDARYTYEEA--GTCR 77

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
            + ++   I E       E     +TGGEPLLQ +V  L+ AL     ++ +ETNGTI
Sbjct: 78  TIAEVMAAIAELPPVSRVE-----ITGGEPLLQEEVYSLLNALLADQRQVLLETNGTI 130


>gi|296112585|ref|YP_003626523.1| radical SAM superfamily protein [Moraxella catarrhalis RH4]
 gi|295920279|gb|ADG60630.1| radical SAM superfamily protein [Moraxella catarrhalis RH4]
 gi|326561347|gb|EGE11705.1| radical SAM superfamily protein [Moraxella catarrhalis 7169]
 gi|326570776|gb|EGE20801.1| radical SAM superfamily protein [Moraxella catarrhalis BC1]
 gi|326577706|gb|EGE27582.1| radical SAM superfamily protein [Moraxella catarrhalis O35E]
          Length = 266

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 25/121 (20%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF +LQGE   AG   +F R +GC L           +C +CDT +     + G R+
Sbjct: 50  LTEIFYSLQGEALTAGLPTIFIRLTGCPL-----------RCHYCDTTY---SFSGGERW 95

Query: 66  NVDQLADLIEEQ--WITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
            +D +   I +   W       R CV TGGEPL Q + + L+  L + G+E+++ET G +
Sbjct: 96  GLDDIMTHIAQYPCW-------RVCV-TGGEPLAQPNAIALMHKLIQSGYEVSLETAGAL 147

Query: 123 E 123
            
Sbjct: 148 S 148


>gi|255321816|ref|ZP_05362966.1| FO synthase subunit 2 2 [Campylobacter showae RM3277]
 gi|255300920|gb|EET80187.1| FO synthase subunit 2 2 [Campylobacter showae RM3277]
          Length = 254

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 28/139 (20%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNL---------WSGREQDRLSAQCRFCDTDFVGIQ 58
           E FL++QGEG  +GR+A+F RF+GCNL          S +  + L+     CDT    I+
Sbjct: 7   ESFLSIQGEGASSGRLAIFLRFAGCNLNCAGFGVRTVSPKTGETLTG----CDT----IR 58

Query: 59  GTKGGRYN------VDQLADLIEEQWITGEKEGRYCVLTGGEPLL----QVDVPLIQALN 108
               G ++       D+L  +I +      +     V+TGGEPLL    Q+ +  +    
Sbjct: 59  AVFTGHFSYQKITRADELIKII-QNLSANLRRKPIVVITGGEPLLHHKNQILLDFLNFAT 117

Query: 109 KRGFEIAVETNGTIEPPQG 127
             G+E   ETNGTIE   G
Sbjct: 118 SEGYEAHFETNGTIEVDFG 136


>gi|21232445|ref|NP_638362.1| radical activating enzyme [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767472|ref|YP_242234.1| radical activating enzyme [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21114226|gb|AAM42286.1| radical activating enzyme [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572804|gb|AAY48214.1| radical activating enzyme [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 227

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIFL+LQGE   AG   VF R +GC L           +C +CDT +    G  G  +
Sbjct: 20  ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCTYCDTAY-AFHG--GEWH 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           ++D +   +    +      R+  +TGGEPL Q   + L+  L   GF++++ET+G ++
Sbjct: 66  DIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLALLHKLCDAGFDVSLETSGALD 118


>gi|310780054|ref|YP_003968386.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926]
 gi|309749377|gb|ADO84038.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926]
          Length = 222

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 19/121 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y + E F+++ GEG  +G +AVF R +GCNL           +C +CDT +         
Sbjct: 3   YKVVETFVSINGEGKKSGELAVFIRLAGCNL-----------RCSYCDTMWANQDDVVFK 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ-ALNKRGFEIAVETNGT 121
             + +++ D I+   +T         LTGGEPL+Q  V  LI   L      I VETNG+
Sbjct: 52  SMSKEEIYDYIKSTGVTN------VTLTGGEPLIQEGVGELIDYLLTDEKLCIEVETNGS 105

Query: 122 I 122
           +
Sbjct: 106 V 106


>gi|326573561|gb|EGE23524.1| radical SAM superfamily protein [Moraxella catarrhalis 101P30B1]
          Length = 246

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 25/121 (20%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF +LQGE   AG   +F R +GC L           +C +CDT +     + G R+
Sbjct: 30  LTEIFYSLQGEALTAGLPTIFIRLTGCPL-----------RCHYCDTTY---SFSGGERW 75

Query: 66  NVDQLADLIEEQ--WITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
            +D +   I +   W       R CV TGGEPL Q + + L+  L + G+E+++ET G +
Sbjct: 76  GLDDIMTHIAQYPCW-------RVCV-TGGEPLAQPNAIALMHKLIQSGYEVSLETAGAL 127

Query: 123 E 123
            
Sbjct: 128 S 128


>gi|74318221|ref|YP_315961.1| radical activating enzyme [Thiobacillus denitrificans ATCC 25259]
 gi|74057716|gb|AAZ98156.1| radical activating enzyme; radical SAM family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 216

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIFL+LQGE    G   VF R +GC L           +CR+CDT +   QG  G   
Sbjct: 9   ITEIFLSLQGETSRTGLATVFVRLAGCPL-----------RCRWCDTTY-SFQG--GETV 54

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           ++D++        + G      CV TGGEPL Q + +PL+  L   G+ +++ET+G ++
Sbjct: 55  SLDEVL-----ARVAGFGVSVVCV-TGGEPLAQKNCLPLLARLCDAGYSVSLETSGALD 107


>gi|58581294|ref|YP_200310.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58425888|gb|AAW74925.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 210

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIFL+LQGE   AG   VF R +GC L           +C +CDT +       GG +
Sbjct: 3   ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCVYCDTAY----AFHGGEW 47

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           +   + D++ E    G    R+  +TGGEPL Q   + L+Q L   G+++++ET+G ++
Sbjct: 48  H--DIDDVLAEVATHGV---RHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETSGALD 101


>gi|163754267|ref|ZP_02161390.1| GTPase ObgE [Kordia algicida OT-1]
 gi|161326481|gb|EDP97807.1| GTPase ObgE [Kordia algicida OT-1]
          Length = 253

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 33/153 (21%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-GIQGTKGG--- 63
           EIF ++QGEG + G+ +VF R S CNL            C +CDTD+    + T+     
Sbjct: 14  EIFHSIQGEGKNLGQPSVFIRTSLCNL-----------HCIWCDTDYTWNWEKTRFAHVK 62

Query: 64  -------RYNVDQL--ADLIEEQWITGEKEG-RYCVLTGGEPLLQVD--VPLIQALNKRG 111
                  +Y +D++  +  +EE +    K G +  VLTGGEP++Q+     L++  N + 
Sbjct: 63  DSDPLYEKYKMDEMIISLTLEEIYNEVAKSGCKNIVLTGGEPMMQLQELSALMKFFNTKA 122

Query: 112 --FEIAVETNGTIEPPQG----IDWICVSPKAG 138
             +   +ETNGT+ P       ID   VSPK  
Sbjct: 123 TDYFFEIETNGTLLPDATFDALIDQYNVSPKLA 155


>gi|254427312|ref|ZP_05041019.1| radical SAM domain protein [Alcanivorax sp. DG881]
 gi|196193481|gb|EDX88440.1| radical SAM domain protein [Alcanivorax sp. DG881]
          Length = 213

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF +LQGE    GR  VF R +GC             +C +CDT++    G K    
Sbjct: 5   LTEIFHSLQGESRTVGRPTVFVRLTGC-----------PQRCVWCDTEYAFSGGEKW--- 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
               LA + E+    G    +Y  +TGGEPL Q + +PL+ AL   G+++++ET G ++
Sbjct: 51  ---TLAAIREQVAAHG---AQYVTVTGGEPLAQPNCLPLLTALCDDGYQVSLETGGAMD 103


>gi|326560168|gb|EGE10557.1| radical SAM superfamily protein [Moraxella catarrhalis 103P14B1]
 gi|326564255|gb|EGE14489.1| radical SAM superfamily protein [Moraxella catarrhalis 46P47B1]
 gi|326566195|gb|EGE16348.1| radical SAM superfamily protein [Moraxella catarrhalis 12P80B1]
 gi|326571649|gb|EGE21664.1| radical SAM superfamily protein [Moraxella catarrhalis BC7]
 gi|326573039|gb|EGE23015.1| radical SAM superfamily protein [Moraxella catarrhalis CO72]
          Length = 238

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 25/121 (20%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF +LQGE   AG   +F R +GC L           +C +CDT +     + G R+
Sbjct: 22  LTEIFYSLQGEALTAGLPTIFIRLTGCPL-----------RCHYCDTTY---SFSGGERW 67

Query: 66  NVDQLADLIEEQ--WITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
            +D +   I +   W       R CV TGGEPL Q + + L+  L + G+E+++ET G +
Sbjct: 68  GLDDIMTHIAQYPCW-------RVCV-TGGEPLAQPNAIALMHKLIQSGYEVSLETAGAL 119

Query: 123 E 123
            
Sbjct: 120 S 120


>gi|282889934|ref|ZP_06298469.1| hypothetical protein pah_c008o017 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500127|gb|EFB42411.1| hypothetical protein pah_c008o017 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 224

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 103/229 (44%), Gaps = 51/229 (22%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +I EIF ++QGE   AG    F R + CNL           +C +CDT +        GR
Sbjct: 14  NIIEIFSSVQGETSFAGLPTAFIRLAACNL-----------RCSWCDTSY------SFGR 56

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
            +V  L  ++E+     E   R   +TGGEPLLQ +V PL+  L  + + ++VET G++ 
Sbjct: 57  GDVFGLPQILEK---VDEFGCRNVCVTGGEPLLQKNVYPLMTQLCDKNYIVSVETGGSLS 113

Query: 124 PPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQVN-VSPENYIGF------DF----- 168
             +      + P+    L IK        +  +P ++ + PE+ + F      D+     
Sbjct: 114 IEE------IDPRVHIILDIKCPDSNMSDRNFWPNLSAIRPEDEVKFVINGYQDYLYAKE 167

Query: 169 --ERFSLQPMDGPFLEE------NTNLAISYCFQNP-KWRLSVQTHKFI 208
             E+F L     P L        ++   +++  Q+    RL++Q HKFI
Sbjct: 168 VCEKFQLFSRKIPVLLSPVFDVLDSKELVNWVLQDKLPVRLNMQLHKFI 216


>gi|288559696|ref|YP_003423182.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE
           [Methanobrevibacter ruminantium M1]
 gi|288542406|gb|ADC46290.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE
           [Methanobrevibacter ruminantium M1]
          Length = 202

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 97/217 (44%), Gaps = 31/217 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF + QGEG + G  A F R  GCNL            C +CDTD    +       
Sbjct: 6   VSEIFTSFQGEGPYIGTPATFLRLYGCNL-----------NCPWCDTDISTYEIL----- 49

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI- 122
           +VD++ +++  Q        R  V+TGGEP LQ++    LI+ +     +I +ETNG+I 
Sbjct: 50  SVDEVFEILMTQ--MEFNNIRILVITGGEPTLQMEELKRLIKEIPDE-IKIQIETNGSIF 106

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVF------PQVNVSPENYIGFDFERFSLQPM 176
           E    ID++ +SPK   +   K   +   VF       Q ++    Y+   +       +
Sbjct: 107 EYVPEIDYV-ISPKEDKETVFKNYYKYDNVFFKFVICSQEDIDEVIYLKDKYNYDKTIWL 165

Query: 177 DGPFLE--ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            G F +  E  +L           +LSVQTHK++  R
Sbjct: 166 QGEFSKDGEMADLIRENFPHLENVKLSVQTHKYLNQR 202


>gi|291522438|emb|CBK80731.1| Organic radical activating enzymes [Coprococcus catus GD/7]
          Length = 223

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 25/126 (19%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           + Y + E F+++ GEG  AG++AVF RF GCNL            C +CDT +       
Sbjct: 3   RTYEVVEHFVSINGEGPLAGQLAVFVRFKGCNL-----------SCLYCDTKWANEPDVP 51

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-----GFEIAV 116
                 +++   I E  +      R   LTGGEPL   D P I  L ++        + +
Sbjct: 52  ARVMTAEEIHQAIMETGV------RNVTLTGGEPL---DRPHISELLEKLAADHSLHVEI 102

Query: 117 ETNGTI 122
           ETNG++
Sbjct: 103 ETNGSV 108


>gi|326569745|gb|EGE19795.1| radical SAM superfamily protein [Moraxella catarrhalis BC8]
          Length = 238

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 25/121 (20%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF +LQGE   AG   +F R +GC L           +C +CDT +     + G R+
Sbjct: 22  LTEIFYSLQGEALTAGLPTIFIRLTGCPL-----------RCHYCDTTY---SFSGGERW 67

Query: 66  NVDQLADLIEEQ--WITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
            +D +   I +   W       R CV TGGEPL Q + + L+  L + G+E+++ET G +
Sbjct: 68  GLDDIMTHIAQYPCW-------RVCV-TGGEPLAQPNAITLMHKLIQSGYEVSLETAGAL 119

Query: 123 E 123
            
Sbjct: 120 S 120


>gi|254787332|ref|YP_003074761.1| radical SAM domain-containing protein [Teredinibacter turnerae
           T7901]
 gi|237685298|gb|ACR12562.1| radical SAM domain protein [Teredinibacter turnerae T7901]
          Length = 214

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 21/124 (16%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    I EIF +LQGE    G   VF R +GC L           +C++CD+++    G 
Sbjct: 1   MTDLRITEIFHSLQGEARTVGVPTVFVRLTGCPL-----------RCQYCDSEYAFFGGE 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119
           K    ++D++     E  + G +    CV TGGEPL Q + +PL++ L   G  +++ET+
Sbjct: 50  KK---SLDEI-----EALVIGFRCSHVCV-TGGEPLAQPNCIPLLERLCDAGLAVSLETS 100

Query: 120 GTIE 123
           G ++
Sbjct: 101 GAMD 104


>gi|289661912|ref|ZP_06483493.1| putative radical activating enzyme [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 227

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIFL+LQGE   AG   VF R +GC L           +C +CDT +    G  G  +
Sbjct: 20  ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAY-AFHG--GEWH 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           ++D +   +    +      R+  +TGGEPL Q   + L+Q L   G+++++ET+G ++
Sbjct: 66  DIDAIVAEVARHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETSGALD 118


>gi|213615976|ref|ZP_03371802.1| hypothetical protein SentesTyp_16494 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 178

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 79/174 (45%), Gaps = 35/174 (20%)

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +  K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K GF   +E
Sbjct: 18  ESDKWGAASSEDLLAVINRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKSGFSCQIE 73

Query: 118 TNGTIE---PPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVNVSPENYIG--FDFERF 171
           T+GT E    P    W+ VSPK    + ++GG + L     + N   ++ +G   D E  
Sbjct: 74  TSGTHEVRCTPNT--WVTVSPK----VNMRGGYDVLSQALERAN-EIKHPVGRVRDIEAL 126

Query: 172 ---------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                          +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 127 DELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 177


>gi|308273462|emb|CBX30064.1| hypothetical protein N47_D28730 [uncultured Desulfobacterium sp.]
          Length = 219

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 22/129 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF ++QGE  ++G    F R +GCNL           +C +CDT +      +G   
Sbjct: 10  INEIFYSIQGESLYSGLPCAFIRLAGCNL-----------RCAYCDTKYA---YNEGSEI 55

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124
             D L   I E             +TGGEPL+Q + P LI+ L    F + +ETNG+++ 
Sbjct: 56  ETDHLVKKISEFGCP------LVEITGGEPLIQEETPVLIEKLLDNKFSVLLETNGSLDI 109

Query: 125 PQGIDWICV 133
              ID  C+
Sbjct: 110 SY-IDKRCI 117


>gi|237737359|ref|ZP_04567840.1| radical SAM domain-containing protein [Fusobacterium mortiferum
           ATCC 9817]
 gi|229421221|gb|EEO36268.1| radical SAM domain-containing protein [Fusobacterium mortiferum
           ATCC 9817]
          Length = 222

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 23/127 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  + + EIF ++ GEG   G++A+F R   CNL            C +CDT +      
Sbjct: 1   MANFKVVEIFESINGEGRRVGQLAIFIRLQKCNL-----------NCSYCDTRWANGDDA 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG----FEIAV 116
                + D++ D I +  I      +   LTGGEPLL  DV ++  L K G      + +
Sbjct: 50  PYTLMSEDKIYDRILKSGI------KNITLTGGEPLLHKDVEIL--LEKIGENPNLSLEI 101

Query: 117 ETNGTIE 123
           ETNG+IE
Sbjct: 102 ETNGSIE 108


>gi|291519768|emb|CBK74989.1| Organic radical activating enzymes [Butyrivibrio fibrisolvens 16/4]
          Length = 222

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 19/124 (15%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M +Y + E F+++ GEG HAG +AVF R  GCNL            C +CDT +      
Sbjct: 1   MSVYYVVEKFVSINGEGQHAGELAVFIRLRGCNL-----------ACSYCDTRWACSYEA 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFEIAVET 118
              +    ++ D ++   +          LTGGEPL   D+  L++A       ++ +ET
Sbjct: 50  PAEQMTEVEILDYVKSTGVN------RVTLTGGEPLKARDIKDLLRAFAAEPNIKVEIET 103

Query: 119 NGTI 122
           NG++
Sbjct: 104 NGSV 107


>gi|320539607|ref|ZP_08039271.1| putative conserved protein [Serratia symbiotica str. Tucson]
 gi|320030219|gb|EFW12234.1| putative conserved protein [Serratia symbiotica str. Tucson]
          Length = 250

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 15/147 (10%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGTKG---G 63
           F TLQGEG   G  A+F R  GC +   W   +        R  D   + ++  +    G
Sbjct: 63  FQTLQGEGFFTGVPAIFIRLQGCPVGCSWCDTKHTWDKEVNREVDMQRILVKTEESATWG 122

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
             + +QL  ++ +Q  T     R+ V+TGGEP +   VPL   L ++G+   +ET+GT E
Sbjct: 123 SASAEQLLAVMRQQGYTA----RHVVITGGEPCIYDLVPLTALLEQQGYGCQIETSGTYE 178

Query: 124 PPQGID-WICVSPKAGCDLKIKGGQEL 149
               +  W+ VSPK    + ++GG ++
Sbjct: 179 IRCSVKTWVTVSPK----VNMRGGMKV 201


>gi|171185411|ref|YP_001794330.1| radical SAM domain-containing protein [Thermoproteus neutrophilus
           V24Sta]
 gi|170934623|gb|ACB39884.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 216

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 28/170 (16%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MKL  + EIF +LQGEG + GR AVF R +GC +           +CR+CDT +      
Sbjct: 1   MKL-RVLEIFASLQGEGVNLGRPAVFIRLAGCPI-----------RCRYCDTKY-SWDPL 47

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
            G   + +++          G     + V+TGGEPL+  ++  +    +R   + VET+G
Sbjct: 48  GGEELDAEEVVRRAAAHGPLG-----HVVITGGEPLIWRNLHELACPLRRLGTVEVETSG 102

Query: 121 TIEP-PQ---GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
              P PQ    +D+  VSPK         G E  L  P    SP+ +  F
Sbjct: 103 VYPPTPQLDACVDFYDVSPKLS-----NAGVEAPL-HPHYPRSPKAWFKF 146


>gi|15838492|ref|NP_299180.1| hypothetical protein XF1894 [Xylella fastidiosa 9a5c]
 gi|9106987|gb|AAF84700.1|AE004009_7 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 227

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 23/120 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIFL+LQGE    G   VF R +GC L           +C++CDT +       GG +
Sbjct: 20  ISEIFLSLQGEANSVGWPTVFVRLTGCPL-----------RCQYCDTAY----AFHGGEW 64

Query: 66  -NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
            ++D +   +    +      R+  +TGGEPL Q   + L++ L   GFE+++ET+G ++
Sbjct: 65  CSIDTIVSEVRSYGV------RHVCVTGGEPLAQKRCLLLLEKLCDAGFEVSLETSGALD 118


>gi|125975585|ref|YP_001039495.1| radical SAM family protein [Clostridium thermocellum ATCC 27405]
 gi|256005910|ref|ZP_05430855.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
 gi|281416597|ref|ZP_06247617.1| Radical SAM domain protein [Clostridium thermocellum JW20]
 gi|125715810|gb|ABN54302.1| Radical SAM [Clostridium thermocellum ATCC 27405]
 gi|255990114|gb|EEU00251.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
 gi|281407999|gb|EFB38257.1| Radical SAM domain protein [Clostridium thermocellum JW20]
 gi|316939704|gb|ADU73738.1| Radical SAM domain protein [Clostridium thermocellum DSM 1313]
          Length = 210

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 27/120 (22%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIFL++QGE   AG   VF RF+GCNL           +C +CDT           RY
Sbjct: 3   VNEIFLSIQGESLSAGFPTVFVRFTGCNL-----------RCSYCDT-----------RY 40

Query: 66  NVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
              +  D+   +     K+  Y    LTGGEPLLQ ++  L++ L+   + + +ETNG++
Sbjct: 41  AYKEGEDMTPSEVFEEIKKLHYKRVCLTGGEPLLQKELGQLLEFLD--DYIVTIETNGSV 98


>gi|297539673|ref|YP_003675442.1| Radical SAM domain-containing protein [Methylotenera sp. 301]
 gi|297259020|gb|ADI30865.1| Radical SAM domain protein [Methylotenera sp. 301]
          Length = 212

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 22/124 (17%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MKL  + EIF ++QGE    G   VF R +GC +           +C +CDT +    G+
Sbjct: 1   MKL-KVHEIFYSIQGESSRVGLPTVFVRLTGCPM-----------RCVYCDTAYAFSGGS 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
                N+ ++AD++ +     E   +Y  +TGGEPL Q D   L++ L   G+ +++ET 
Sbjct: 49  -----NI-EIADILAK---VAEFGTKYVTVTGGEPLAQKDCHFLLKDLCDAGYSVSLETG 99

Query: 120 GTIE 123
           G I+
Sbjct: 100 GAID 103


>gi|320530179|ref|ZP_08031249.1| radical SAM domain protein [Selenomonas artemidis F0399]
 gi|320137612|gb|EFW29524.1| radical SAM domain protein [Selenomonas artemidis F0399]
          Length = 243

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 32/157 (20%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-VGIQGT--- 60
           +I EIF ++QGEG + G   VF R  GCNL            C +CDT+  +G   T   
Sbjct: 4   NIIEIFSSIQGEGKYVGCRQVFVRLEGCNL-----------DCTYCDTENEIGRHPTCMV 52

Query: 61  --KGGRY---------NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
               G +         +++ +A L+ +  + G+       +TGGEPLL   VP I+AL +
Sbjct: 53  EMPAGSHELHSYANPLSIETVAALVAQ--VAGDVPHHSLSVTGGEPLLH--VPFIRALKE 108

Query: 110 R-GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
           R    I +ETNGT+         CVS     D+K+ G
Sbjct: 109 RVPLPIFLETNGTLHDALARCIDCVS-YISMDIKLPG 144


>gi|225850855|ref|YP_002731089.1| radical SAM domain protein [Persephonella marina EX-H1]
 gi|225645393|gb|ACO03579.1| radical SAM domain protein [Persephonella marina EX-H1]
          Length = 214

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 23/125 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M+ +++ EIF +++GEG   G    F R  GCNL           +C +CDT +      
Sbjct: 1   MEKFNVVEIFPSIEGEGSLIGYPVTFIRLEGCNL-----------RCEWCDTPY------ 43

Query: 61  KGGRYNVDQLADLIEEQWITGEKE--GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVE 117
               Y+    + L  ++ I+  K    R   LTGGEPL+  +V  L+  + K G+ + +E
Sbjct: 44  ---SYDGKTFSKLTSDEIISELKRYPNRKVCLTGGEPLICENVDKLMTEIIKEGYSLIIE 100

Query: 118 TNGTI 122
           TNGT+
Sbjct: 101 TNGTV 105


>gi|303229411|ref|ZP_07316201.1| radical SAM domain family protein [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303230757|ref|ZP_07317504.1| radical SAM domain family protein [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514517|gb|EFL56512.1| radical SAM domain family protein [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302515947|gb|EFL57899.1| radical SAM domain family protein [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 220

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 21/124 (16%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           ++ E+F ++ GEG   G +  F R   CN+           +C +CDT +     +    
Sbjct: 6   NVIELFSSIDGEGKRQGFLTTFLRLHDCNI-----------RCSYCDTLYSYGPESTFES 54

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRG--FEIAVETNG 120
            +V  +AD+IE+       E     +TGGEPLLQ    + LI  L +R   ++  +ETNG
Sbjct: 55  MSVQAVADVIEQL------ENHRITVTGGEPLLQEPAIIELIDELTRRNARYDFNIETNG 108

Query: 121 TIEP 124
           TI P
Sbjct: 109 TIIP 112


>gi|323497330|ref|ZP_08102348.1| organic radical activating enzyme [Vibrio sinaloensis DSM 21326]
 gi|323317413|gb|EGA70406.1| organic radical activating enzyme [Vibrio sinaloensis DSM 21326]
          Length = 216

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 94/230 (40%), Gaps = 43/230 (18%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68
           +F T+QGEG + G  +VF R   C +            C +CDT     +       + D
Sbjct: 1   MFETIQGEGVYTGVPSVFVRLQECPV-----------GCAWCDTKQTW-EALPEDETSFD 48

Query: 69  QLADLIEEQ--WITGEKEG------------RYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
           ++    ++   W +   EG            ++ V+TGGEP +    PL +A    G + 
Sbjct: 49  RIMVKTQDSPTWCSTSAEGIVNQYRVQGYTAKHIVITGGEPCVYDLRPLTEAFEAIGCQC 108

Query: 115 AVETNGTIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVN--VSPENYIGFDFE-- 169
            +ET+GT E     + W+ VSPK     K+       L   ++   V+ E  I    E  
Sbjct: 109 QIETSGTSEVLTSDNTWVTVSPKVAMKGKLPVLDSALLRADEIKHPVATEKDIDQLDELI 168

Query: 170 ---------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                      +LQP+        T L I  C +   WRLS+QTHK++ I
Sbjct: 169 KRAQVPKQTTIALQPISQK--PRATQLCIDVCVKR-NWRLSIQTHKYLSI 215


>gi|134299611|ref|YP_001113107.1| radical SAM domain-containing protein [Desulfotomaculum reducens
           MI-1]
 gi|134052311|gb|ABO50282.1| Radical SAM domain protein [Desulfotomaculum reducens MI-1]
          Length = 247

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 30/159 (18%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT------DFVGIQGTK 61
           EIF ++QGEG + G   +F RF+GCN W          +C FCDT      ++  ++ T 
Sbjct: 8   EIFSSVQGEGPYVGLRQIFIRFAGCN-W----------KCAFCDTPTNPRPEYFTMEKTP 56

Query: 62  GGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRG 111
           G R           ++L++LI++ +           LTGGEPL+  D    L+ AL    
Sbjct: 57  GQRDFIQVANPVKPERLSELIKQYYNLSHHHS--ISLTGGEPLIYHDYITRLVPALQGTR 114

Query: 112 FEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
             I +ETNGT+ P +    I +      D+K++   + K
Sbjct: 115 KGIYLETNGTL-PEELASVINLCNMISMDIKLESATKEK 152


>gi|258516745|ref|YP_003192967.1| Radical SAM domain-containing protein [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257780450|gb|ACV64344.1| Radical SAM domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 211

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 20/117 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF +LQGEG  AG   VF R +GCNL           +C +CDT +   +G +    
Sbjct: 3   VNEIFYSLQGEGITAGYPTVFIRLTGCNL-----------RCLYCDTVYAYEEGQE---M 48

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +V  +AD + E          Y  +TGGEPL Q     +       + + +ETNG++
Sbjct: 49  SVKDVADRVHEYG------AHYVCITGGEPLQQKAELKLLLSLLNRYTVTIETNGSL 99


>gi|217969210|ref|YP_002354444.1| radical SAM protein [Thauera sp. MZ1T]
 gi|217506537|gb|ACK53548.1| Radical SAM domain protein [Thauera sp. MZ1T]
          Length = 223

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 68/147 (46%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G   VF R +GC L           +C +CDT +       GG  
Sbjct: 16  ITEIFASLQGESTRVGLPTVFVRLTGCPL-----------RCTWCDTAY----AFSGGET 60

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
               L D++ E    G    R+  +TGGEPL Q   +PL+ AL   G ++++ET+G    
Sbjct: 61  RT--LDDILAEVASHGL---RHVCVTGGEPLAQKGCLPLLAALCDAGHDVSLETSG---- 111

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
              +D   V P+     DLK  G  EL
Sbjct: 112 --ALDIAGVDPRVSRIVDLKAPGSGEL 136


>gi|257095755|ref|YP_003169396.1| Radical SAM domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048279|gb|ACV37467.1| Radical SAM domain protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 219

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIFL+LQGE    G   VF R +GC L           +C +CDT +       GGR 
Sbjct: 12  ISEIFLSLQGETSRVGLPTVFVRLTGCPL-----------RCVWCDTAY----AFAGGRT 56

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123
               L D++ E       + R+  +TGGEPL Q   + L+  L   G+ +++ET+G ++
Sbjct: 57  MT--LPDILAE---VARHDVRHVCVTGGEPLAQPACLALLSELCDTGYAVSLETSGALD 110


>gi|294626853|ref|ZP_06705445.1| radical activating enzyme [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292598867|gb|EFF43012.1| radical activating enzyme [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 227

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 29/146 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIFL+LQGE   AG   VF R +GC L           +C +CDT +    G  G  +
Sbjct: 20  ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAY-AFHG--GQWH 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           ++D +   +    +      R+  +TGGEPL Q   + L++ L   G+++++ET+G    
Sbjct: 66  DIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETSG---- 115

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQE 148
              +D   V P+     D+K  G  E
Sbjct: 116 --ALDVSAVDPRVSRVVDIKTPGSGE 139


>gi|254000097|ref|YP_003052160.1| Radical SAM domain-containing protein [Methylovorus sp. SIP3-4]
 gi|253986776|gb|ACT51633.1| Radical SAM domain protein [Methylovorus sp. SIP3-4]
          Length = 212

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 30/153 (19%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MKL  I EIF +LQGE    G   VF R +GC +           +C +CDT +    G+
Sbjct: 1   MKL-RIHEIFHSLQGESSRVGLPTVFVRLTGCPM-----------RCVYCDTAYAFHGGS 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
                   ++ D++++     E    Y  +TGGEPL Q D   L+  L   G+ +++ET 
Sbjct: 49  SM------EIDDIMQK---VAEYGAHYVTVTGGEPLAQRDCHVLLTRLCDAGYSVSLETG 99

Query: 120 GTIEPPQGIDWICVSPKAGC--DLKIKGGQELK 150
           G       +D   V P+     D+K  G  EL+
Sbjct: 100 G------AMDIANVDPRVSVILDIKTPGSGELE 126


>gi|149196484|ref|ZP_01873538.1| queuosine biosynthesis protein [Lentisphaera araneosa HTCC2155]
 gi|149140164|gb|EDM28563.1| queuosine biosynthesis protein [Lentisphaera araneosa HTCC2155]
          Length = 212

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 21/122 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EI+ +LQGE   +G   +F R SGCNL           +C +CDT++     T G
Sbjct: 1   MLYITEIYKSLQGESTWSGLACIFIRLSGCNL-----------RCSWCDTEY---SFTSG 46

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
            + ++D + D +E+             +TGGEPL Q  V  L+Q L   G  + VET G 
Sbjct: 47  DKLSIDNILDRVEQL------NCDLVEVTGGEPLAQDKVGELVQKLLDLGKTVLVETGGH 100

Query: 122 IE 123
           ++
Sbjct: 101 MD 102


>gi|257454238|ref|ZP_05619508.1| radical SAM domain protein [Enhydrobacter aerosaccus SK60]
 gi|257448411|gb|EEV23384.1| radical SAM domain protein [Enhydrobacter aerosaccus SK60]
          Length = 240

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 31/147 (21%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF +LQGE   AG   +F R +GC L           +C +CDT++  + G +    
Sbjct: 24  VTEIFYSLQGEALSAGLPTIFIRLTGCPL-----------RCVYCDTEYAFVGGERMSLA 72

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI-- 122
            +  +      Q        R C LTGGEPL Q + + L+  L   G+EI++ET+G +  
Sbjct: 73  GILAVCQSFPCQ--------RIC-LTGGEPLAQPNAIALMNLLLAHGYEISLETSGALSV 123

Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQE 148
            E P  +  +        D+K    QE
Sbjct: 124 AEVPTAVSKV-------MDIKTPSSQE 143


>gi|118602444|ref|YP_903659.1| radical SAM domain-containing protein [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|118567383|gb|ABL02188.1| Radical SAM domain protein [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 213

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 21/119 (17%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +I EIF +LQGEG   G  +VF R +GC L           +C +CDT++      KG  
Sbjct: 7   NINEIFYSLQGEGREVGLPSVFIRLTGCPL-----------RCTYCDTEY----AFKGN- 50

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
            N+  + ++I++     + +  Y  +TGGEPL Q +   L+  L K  +++++ET+G+I
Sbjct: 51  -NLMAIDEIIKK---IKQYDTPYICVTGGEPLAQKNCCLLLNELVKNNYQVSLETSGSI 105


>gi|323212709|gb|EFZ97526.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
          Length = 121

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 59/130 (45%), Gaps = 24/130 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGC----------NLW---SGREQDRLSAQCRFC 50
           Y I E+F TLQGEG   G  A+F R  GC          + W   S RE    S   +  
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTK 62

Query: 51  DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110
           ++D       K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K 
Sbjct: 63  ESD-------KWGAASSEDLLAVINRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKS 111

Query: 111 GFEIAVETNG 120
           GF   +ET+G
Sbjct: 112 GFSCQIETSG 121


>gi|325929354|ref|ZP_08190484.1| organic radical activating enzyme [Xanthomonas perforans 91-118]
 gi|325540266|gb|EGD11878.1| organic radical activating enzyme [Xanthomonas perforans 91-118]
          Length = 227

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIFL+LQGE   AG   VF R +GC L           +C +CDT +    G  G  +
Sbjct: 20  ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAY-AFHG--GQWH 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           ++D +   +    +      R+  +TGGEPL Q   + L++ L   G+++++ET+G ++
Sbjct: 66  DIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETSGALD 118


>gi|254516700|ref|ZP_05128759.1| radical SAM domain protein [gamma proteobacterium NOR5-3]
 gi|219675123|gb|EED31490.1| radical SAM domain protein [gamma proteobacterium NOR5-3]
          Length = 226

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 27/121 (22%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G   VF R +GC L           +C +CDT++       GG  
Sbjct: 18  ITEIFYSLQGEARTVGLPTVFVRLTGCPL-----------RCLYCDTEY----AFHGG-- 60

Query: 66  NVDQLADLIEEQWITG---EKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
                 +++  + I G   +    Y  +TGGEPL Q + +PL+  L  +G+E+++ET+G 
Sbjct: 61  ------EIMTFEHIAGQVAQHAPAYVTVTGGEPLAQPNCLPLLSLLCDQGYEVSLETSGA 114

Query: 122 I 122
           +
Sbjct: 115 M 115


>gi|319786288|ref|YP_004145763.1| radical SAM protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317464800|gb|ADV26532.1| Radical SAM domain protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 219

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 31/148 (20%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR- 64
           I EIFL+LQGE   AG   VF R +GC L           +C++CDT +       GG+ 
Sbjct: 12  ITEIFLSLQGEANAAGWPTVFVRLTGCPL-----------RCQYCDTAY----AFHGGQW 56

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           + +D +   +    +      R+  +TGGEPL Q   + L++ L   G ++++ET+G   
Sbjct: 57  WEIDAILAEVARHGV------RHVCVTGGEPLAQKRCLDLLRRLCDAGHDVSLETSG--- 107

Query: 124 PPQGIDWICVSPKAG--CDLKIKGGQEL 149
               +D   V P+     DLK  G  E+
Sbjct: 108 ---ALDIAGVDPRVSRVVDLKTPGSAEM 132


>gi|294665414|ref|ZP_06730702.1| radical activating enzyme [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292604825|gb|EFF48188.1| radical activating enzyme [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 227

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 29/146 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIFL+LQGE   AG   VF R +GC L           +C +CDT +    G  G  +
Sbjct: 20  ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAY-AFHG--GQWH 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           ++D +   +    +      R+  +TGGEPL Q   + L++ L   G+++++ET+G    
Sbjct: 66  DIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETSG---- 115

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQE 148
              +D   V P+     D+K  G  E
Sbjct: 116 --ALDVSAVDPRVSRVVDIKTPGSGE 139


>gi|78048825|ref|YP_365000.1| putative radical activating enzyme [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037255|emb|CAJ25000.1| putative radical activating enzyme [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 227

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIFL+LQGE   AG   VF R +GC L           +C +CDT +    G  G  +
Sbjct: 20  ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAY-AFHG--GQWH 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           ++D +   +    +      R+  +TGGEPL Q   + L++ L   G+++++ET+G ++
Sbjct: 66  DIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETSGALD 118


>gi|50085673|ref|YP_047183.1| putative radical activating enzyme [Acinetobacter sp. ADP1]
 gi|49531649|emb|CAG69361.1| putative radical activating enzyme [Acinetobacter sp. ADP1]
          Length = 245

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C +CDT +   +G  G R 
Sbjct: 29  ITEIFYSLQGEANAAGLPTVFIRLTGCPL-----------RCTYCDTTY-SFEG--GERL 74

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           ++D++ +           +  Y  +TGGEPL Q + + L+  L+  G ++++ET+GT++
Sbjct: 75  SLDEIIN------TALSYKTPYICVTGGEPLAQPNCLILLSRLSDLGCQVSLETSGTLD 127


>gi|158520514|ref|YP_001528384.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158509340|gb|ABW66307.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 212

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 22/122 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M L+ + E+F ++QGE   AG    F R +GCNL            C +CDT +    GT
Sbjct: 1   MSLH-VSELFFSIQGESLDAGLACAFVRLAGCNLC-----------CAYCDTAYARQGGT 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
                 + ++ D +     +         +TGGEPLLQ + P LIQ L   G+ + +ETN
Sbjct: 49  P---MEIPEILDRVARFGCS------LVEITGGEPLLQKETPLLIQRLLSVGYRVLLETN 99

Query: 120 GT 121
           GT
Sbjct: 100 GT 101


>gi|327398276|ref|YP_004339145.1| Radical SAM domain-containing protein [Hippea maritima DSM 10411]
 gi|327180905|gb|AEA33086.1| Radical SAM domain protein [Hippea maritima DSM 10411]
          Length = 211

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 23/134 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF ++QGEG   G  A+F R  GCNL           +C FCDT +     +     
Sbjct: 5   VSEIFYSIQGEGSKIGYKAIFIRLCGCNL-----------KCPFCDTKYA---LSCKNPM 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
           N  ++ + I           +  + TGGEP L+ +           +   +ETNGT+ P 
Sbjct: 51  NAHEIYEKI------SRFPAKNIIFTGGEPTLKDNFMAYFMKKYNNYSYFLETNGTLFPK 104

Query: 126 QGIDW---ICVSPK 136
           + I+    I VSPK
Sbjct: 105 KSINLFSHIVVSPK 118


>gi|119871554|ref|YP_929561.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM
           4184]
 gi|119672962|gb|ABL87218.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 216

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 37/172 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + EIF +LQGEG + G+ AVF R +GC +           +CR+CDT           
Sbjct: 3   FRVVEIFASLQGEGVNLGKPAVFIRLAGCPI-----------RCRYCDT----------- 40

Query: 64  RYNVDQLADLIEEQWITGEKEGRY-----CVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
           +Y+ D L  +  +     ++   Y      V+TGGEPL+  ++  +    +R   + VET
Sbjct: 41  KYSWDPLGGVEIDAEEVVQRAAAYGQLGHVVITGGEPLIWRNLHELACPLRRLGTVEVET 100

Query: 119 NGTIEP-PQ---GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
           +G   P PQ    +D+  VSP      K+   +   L+ P    SP+ +  F
Sbjct: 101 SGVYPPTPQLDACVDFYDVSP------KLSNARVDALLHPHYPRSPKAWFKF 146


>gi|86740458|ref|YP_480858.1| radical SAM family protein [Frankia sp. CcI3]
 gi|86567320|gb|ABD11129.1| Radical SAM [Frankia sp. CcI3]
          Length = 251

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 26/203 (12%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT----DFVGIQGT 60
           + EIF  T+QGEG   GR  VF R  GCNL            C +CDT    D+ G+  T
Sbjct: 21  VNEIFGPTVQGEGPSTGRRCVFLRLGGCNL-----------TCSWCDTPYTWDWWGVSDT 69

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQVD--VPLIQALNKRGFEIA 115
            G R++  +    +    +     G      V++GGEPL Q    + L+  L   G E+ 
Sbjct: 70  -GRRFDPGRELHAMSAAQVGDRLRGLGSGLVVISGGEPLSQQRRLLGLVTGLVDDGIEVE 128

Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
           +ETNGT+ P + +    V+      L   G  E + + P+   +   + G    RF    
Sbjct: 129 IETNGTVAPLEELAESGVAFNVSVKLAHSGVAEPRRLVPEALAA---FAGNPSARFKFVC 185

Query: 176 MDGPFLEENTNLAISYCFQNPKW 198
            D   L+E   L   +    P W
Sbjct: 186 ADRDDLDEVGTLVDRFNLA-PVW 207


>gi|303242851|ref|ZP_07329315.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
 gi|302589597|gb|EFL59381.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
          Length = 209

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 94/228 (41%), Gaps = 54/228 (23%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIFL++QGE    G   +F RF+GCNL           +C +CDT +    G +   Y
Sbjct: 3   VNEIFLSIQGESISTGFPTIFVRFTGCNL-----------RCCYCDTTYAYEDGKEMSPY 51

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT--- 121
            V +       +        R C+ TGGEPLLQ D+  L++ L    + + +ETNG    
Sbjct: 52  EVFEEVKRFHYK--------RVCI-TGGEPLLQKDLNELLRLLGD--YAVTIETNGAVPI 100

Query: 122 --IEPPQGIDWI--CVSPKAGCDLK--------IKGGQELKLVFPQVN--------VSPE 161
             I   +G  W+     P +GC  +        ++   E+K V    N        +   
Sbjct: 101 EDITLCEGHSWVMDMKVPSSGCSNQMVLDNFRYLRDKDEIKFVIGDRNDYDWAKGIIKNH 160

Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP-KWRLSVQTHKFI 208
           +Y G      +  P+ G     N   A+S+   +    R  VQ HK I
Sbjct: 161 HYKG----TITFSPVYGRI---NCEDAVSWILADRLDVRFQVQLHKII 201


>gi|260778537|ref|ZP_05887429.1| queuosine Biosynthesis QueE Radical SAM [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260604701|gb|EEX30996.1| queuosine Biosynthesis QueE Radical SAM [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 216

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 90/230 (39%), Gaps = 43/230 (18%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68
           +F T+QGEG   G  +VF R   C +            C +CDT        +  R   +
Sbjct: 1   MFETIQGEGVFTGVPSVFVRLQICPV-----------GCAWCDTKQTWDATPQDERPLAE 49

Query: 69  QLADL-------------IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
            LA               I EQ+     + ++ V+TGGEP +    PL +A    G    
Sbjct: 50  VLAKTEDSPTWCSVSGGDIIEQYRQQGYQAKHIVITGGEPCIYDLRPLTEAFEAIGCRCQ 109

Query: 116 VETNGTIEPPQGID--WICVSPKAG---------CDL----KIKGGQELKLVFPQVNVSP 160
           +ET+GT  P    +  W+ VSPK           C L    +IK          Q++   
Sbjct: 110 IETSGT-SPILASENTWVTVSPKVAMKGKLPVLDCALLRANEIKHPVATDKDIEQLDALI 168

Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E     +    +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 169 ERAGVPESTTIALQPISQK--PRATQLCIDTCIAR-NWRLSIQTHKYLSI 215


>gi|218781985|ref|YP_002433303.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218763369|gb|ACL05835.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 215

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 93/226 (41%), Gaps = 50/226 (22%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           EIF  +QGE  + G   VF R SGCNL           +CR+CDT         G  Y+ 
Sbjct: 7   EIFYGIQGESTYQGMPCVFIRLSGCNL-----------RCRWCDT---------GYAYDA 46

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQ 126
                + E     G+       +TGGEPLLQ + P L+ A    G  + +ETNG+ +  +
Sbjct: 47  GLTMSISEIMEKAGQFGCPIVEVTGGEPLLQKETPALVDAFLNIGLLVLLETNGSQDIAK 106

Query: 127 GIDWICVS------PKAGCD--------LKIKGGQELKLVFPQVNVSPENY--------- 163
            +D  C+       P +G +         ++    ELK V      S E+Y         
Sbjct: 107 -VDSRCIRIVDVKCPSSGMEEHNDYSNLSRMTEKDELKFVI----ASREDYEFARKRVRL 161

Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNP-KWRLSVQTHKFI 208
           + FD  R +       F E +      +  Q+  + RL +Q HKFI
Sbjct: 162 LDFDGCRMNAIHFSPVFGELDPKTLAEWILQDRLEVRLHLQMHKFI 207


>gi|82703824|ref|YP_413390.1| radical SAM family protein [Nitrosospira multiformis ATCC 25196]
 gi|82411889|gb|ABB75998.1| Radical SAM [Nitrosospira multiformis ATCC 25196]
          Length = 234

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIFL+LQGE    G   VF R +GC L           +C +CDT +   +G +    
Sbjct: 27  VNEIFLSLQGETSRVGLPTVFVRLTGCPL-----------RCGYCDTAYAFHEGERL--- 72

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
               LA ++ E         R+  +TGGEPL Q + + L++ L   G+ +++ET G ++
Sbjct: 73  ---SLAAILME---VARHGARHVTVTGGEPLAQKECLALLRLLCDAGYSVSMETGGALD 125


>gi|255745752|ref|ZP_05419700.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholera CIRS 101]
 gi|262158970|ref|ZP_06030082.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae INDRE
           91/1]
 gi|255736827|gb|EET92224.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholera CIRS 101]
 gi|262029155|gb|EEY47807.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae INDRE
           91/1]
          Length = 216

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 92/229 (40%), Gaps = 41/229 (17%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQ--DRLSAQCRFCDTDFVGIQ-GTKG 62
           +F  +QGEG   G  AVF R  GC +   W   +Q  + L +      T F  I   T  
Sbjct: 1   MFEIIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLDSD----QTSFSQILLKTND 56

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                   A  + +++     + ++ V+TGGEP +     L QA    G    +ET+GT 
Sbjct: 57  APTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQIETSGTY 116

Query: 123 EPPQGID-WICVSPKAGC-------DLKIKGGQELKL-------------VFPQVNVSPE 161
           E     + W+ VSPK          D  ++   E+K              +  +  VS +
Sbjct: 117 EVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLARAQVSAQ 176

Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             I       +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 177 TAI-------ALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215


>gi|237755689|ref|ZP_04584298.1| radical SAM domain protein [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237692139|gb|EEP61138.1| radical SAM domain protein [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 217

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 21/121 (17%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + EIF +++GEG   G   VF R  GCNL           +C +CDT +       G 
Sbjct: 10  FKVVEIFRSVEGEGRWVGLPVVFIRLEGCNL-----------RCSWCDTPY----SYTGE 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGT 121
            + +  + D+++E  I      R C+ TGGEP     +DV L++ L +  +++ +ETNGT
Sbjct: 55  NFKLLSITDILDE--IKKYNLKRVCI-TGGEPFFTENLDV-LVENLIENSYQVFIETNGT 110

Query: 122 I 122
           +
Sbjct: 111 L 111


>gi|322667352|gb|EFY63516.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
          Length = 141

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 31/147 (21%)

Query: 85  GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE---PPQGIDWICVSPKAGCDL 141
            R+ V+TGGEP +   +PL   L K GF   +ET+GT E    P    W+ VSPK    +
Sbjct: 4   ARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVCCTPNT--WVTVSPK----V 57

Query: 142 KIKGGQE-LKLVFPQVNVSPENYIG--FDFERF---------------SLQPMDGPFLEE 183
            ++GG + L     + N   ++ +G   D E                 +LQP+     E+
Sbjct: 58  NMRGGYDVLSQALERAN-EIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQK--ED 114

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
            T L I  C     WRLS+QTHK++ I
Sbjct: 115 ATRLCIETCIAR-NWRLSMQTHKYLNI 140


>gi|71901732|ref|ZP_00683804.1| Radical SAM [Xylella fastidiosa Ann-1]
 gi|71728504|gb|EAO30663.1| Radical SAM [Xylella fastidiosa Ann-1]
          Length = 217

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 23/120 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIFL+LQGE    G   VF R +GC L           +C++CDT +       GG +
Sbjct: 10  ISEIFLSLQGEANSVGWPTVFVRLTGCPL-----------RCQYCDTSY----AFHGGEW 54

Query: 66  -NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
            ++D + + +    +      R+  +TGGEPL Q   + L++ L    FE+++ET+G ++
Sbjct: 55  RSIDTIVNEVRRYGV------RHVCVTGGEPLAQKRCLLLLEKLCDADFEVSLETSGALD 108


>gi|157165265|ref|YP_001466044.1| phosphoribosylaminoimidazole-succinocarboxamide synthase
           [Campylobacter concisus 13826]
 gi|112801208|gb|EAT98552.1| radical SAM domain protein [Campylobacter concisus 13826]
          Length = 251

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 12/125 (9%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNL-WSG----REQDRLSAQCRFCDTDFVGIQGT-K 61
           E FL++QGEG + GR+AVF RF GCNL  SG        +   +   CD+     +G   
Sbjct: 9   EAFLSIQGEGAYQGRLAVFLRFLGCNLNCSGFGVKTRSLKTGEELLGCDSIRAVFKGHFH 68

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL----QVDVPLIQALNKRGFEIAVE 117
             RY+ D++  L+ +    G ++    VLTGGEPL+    +  + L++ L    +E+  E
Sbjct: 69  HKRYSTDEILSLV-DGLCKGLEQKPIIVLTGGEPLIWHQNENFINLVRNL-LINYEVHFE 126

Query: 118 TNGTI 122
           TNGTI
Sbjct: 127 TNGTI 131


>gi|152991808|ref|YP_001357529.1| hypothetical protein SUN_0212 [Sulfurovum sp. NBC37-1]
 gi|151423669|dbj|BAF71172.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 252

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 85/190 (44%), Gaps = 27/190 (14%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-----SGREQDRLSAQCRF-CDTDFVG 56
           ++ + E F ++QGEG +AG  + F R  GCNL      +  E D    + R+ CDT F  
Sbjct: 1   MFYLTEQFFSIQGEGKYAGVPSYFLRTGGCNLSCPGFGATYEVD---GEIRYGCDTYFAV 57

Query: 57  IQGTKGGRYNVDQ---LADLIEEQWITGEKEGRYCVLTGGEPLL----QVDVPLIQALNK 109
                     VD    L D ++E++ T        V+TGGEPL+     V   ++  L  
Sbjct: 58  DSAYAKSWKKVDDSRILVDRLQEEF-TQIGYAPDVVITGGEPLMYHSDSVFYEVVSWLVD 116

Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGC----DLKIKGGQE--LKLVFPQVNVSPENY 163
           RG  I  ETNGTIE    ID+        C     LK+    E   K V PQ   + ++Y
Sbjct: 117 RGVRITFETNGTIE----IDFDAFPAYKACVFALSLKLANSGEPASKRVIPQALKNLQSY 172

Query: 164 IGFDFERFSL 173
               F +F++
Sbjct: 173 SKETFLKFTI 182


>gi|119504267|ref|ZP_01626347.1| putative radical activating enzyme [marine gamma proteobacterium
           HTCC2080]
 gi|119459775|gb|EAW40870.1| putative radical activating enzyme [marine gamma proteobacterium
           HTCC2080]
          Length = 219

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 21/118 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G   VF R +GC L           +C +CDT++       GG+ 
Sbjct: 11  ITEIFHSLQGEARSVGLPTVFVRLTGCPL-----------RCVWCDTEY----AFSGGK- 54

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
            +  L  ++++  I      R CV TGGEPL Q + +PL++ L   G+E+++ET+G +
Sbjct: 55  -ILALTQILQQ--IKSFSCPRVCV-TGGEPLAQPESLPLLKQLCDEGYEVSLETSGAL 108


>gi|226952147|ref|ZP_03822611.1| radical activating enzyme [Acinetobacter sp. ATCC 27244]
 gi|294651041|ref|ZP_06728380.1| radical activating enzyme [Acinetobacter haemolyticus ATCC 19194]
 gi|226837109|gb|EEH69492.1| radical activating enzyme [Acinetobacter sp. ATCC 27244]
 gi|292823054|gb|EFF81918.1| radical activating enzyme [Acinetobacter haemolyticus ATCC 19194]
          Length = 238

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G   VF R +GC L           +C +CDT +   +G  G R 
Sbjct: 22  ITEIFYSLQGEANTFGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERL 67

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           +++ + +         + +  Y  +TGGEPL Q + + L+Q L   GF++++ET+G ++
Sbjct: 68  SLEHIIE------TASQYKTPYICVTGGEPLAQPNCLILLQRLCDLGFQVSLETSGALD 120


>gi|254482513|ref|ZP_05095752.1| radical SAM domain protein, putative [marine gamma proteobacterium
           HTCC2148]
 gi|214037204|gb|EEB77872.1| radical SAM domain protein, putative [marine gamma proteobacterium
           HTCC2148]
          Length = 222

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 21/118 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G   VF R +GC L           +C +CDT++     + G  +
Sbjct: 14  ITEIFYSLQGEARTVGVPTVFVRLTGCPL-----------RCVYCDTEYA---FSGGDLF 59

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           ++D +   +         + R+  +TGGEPL Q + + L+  L   G+E+++ET+G +
Sbjct: 60  SIDDVVSRV------AAYQPRFVTVTGGEPLAQPNCLLLLTRLCDAGYEVSLETSGAM 111


>gi|91200480|emb|CAJ73528.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 211

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF ++QGE    G   VF R +GCNL           +C +CDT +   +G      
Sbjct: 3   INEIFRSIQGETSFTGLPFVFVRLTGCNL-----------RCSYCDTQYAYDEG------ 45

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
           N   ++ +I++    G K    CV TGGEPL   + P L++ L  R + + VETNG+ +
Sbjct: 46  NEMPISSIIDKIDSFGLKS--VCV-TGGEPLSNHNTPVLVRELLNRNYTVLVETNGSYD 101


>gi|222824418|ref|YP_002575992.1| radical SAM domain protein [Campylobacter lari RM2100]
 gi|222539639|gb|ACM64740.1| radical SAM domain protein [Campylobacter lari RM2100]
          Length = 249

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTKG 62
           + E FL++QGEG ++G +A+F RF+GCN      G ++++ S     CDT          
Sbjct: 3   VVETFLSIQGEGKYSGNLAIFVRFAGCNFNCVGFGVKKEKDSKILLGCDTIRAVFTKEFK 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----VPLIQALNKRGFEIAVET 118
             Y       L +E            V+TGGEPLL       +  I  L +  F +  ET
Sbjct: 63  TCYKTYTSVKLFDEVLKLANSRKAIVVITGGEPLLNYQNKDFLCFINLLLENDFMVHFET 122

Query: 119 NGTIE 123
           N +IE
Sbjct: 123 NASIE 127


>gi|188996510|ref|YP_001930761.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931577|gb|ACD66207.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 220

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 19/120 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + EIF +++GEG   G   VF R  GCNL           +C +CDT +       G 
Sbjct: 13  FKVVEIFRSVEGEGRWVGLPVVFIRLEGCNL-----------RCSWCDTPY----SYTGE 57

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  ++D++EE  I      R C+ TGGEP    ++  L+  L +  +++ +ETNGT+
Sbjct: 58  NFKLLSISDILEE--IKKYNLKRVCI-TGGEPFFTENLDILVGNLIENNYQVFIETNGTL 114


>gi|45659043|ref|YP_003129.1| Fe-S oxidoreductase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45602289|gb|AAS71766.1| Fe-S oxidoreductase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 243

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 101/239 (42%), Gaps = 50/239 (20%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           S+ EI+L+L GEG   G   +F R +GC+L  G    R      +CDT +  +    G  
Sbjct: 13  SVHEIYLSLSGEGISTGIPTIFVRMAGCSLRCGMTVGR----KLWCDTPY-ALSPKAGEE 67

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--------LQVDVPLIQALNKRGF--EI 114
            +V+Q+ D I+E      +     +LTGGEPL        + +   + +  N  GF    
Sbjct: 68  MSVNQVLDKIQELSAVNIQ----ILLTGGEPLEGRNREFSITLGNEIFRIRNSSGFYPRP 123

Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKG-GQELKLVFPQVNV-----SPENYIGF-- 166
            VETNG  E  +G+D    +     D K+ G G E ++    + +     +P + I F  
Sbjct: 124 RVETNGA-ESIEGMDQFVFT----LDYKLPGSGMEDRMNLKNLEIYKERKNPLDEIKFVI 178

Query: 167 ----DFER-------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
               DFER                 P+ G    E     I Y   +   RLS+QTHK+I
Sbjct: 179 RDKNDFERCLEIIEKHALVGNLLASPVQGELSPEILAEWIKYSLGS-GLRLSIQTHKYI 236


>gi|119715336|ref|YP_922301.1| radical SAM domain-containing protein [Nocardioides sp. JS614]
 gi|119535997|gb|ABL80614.1| Radical SAM domain protein [Nocardioides sp. JS614]
          Length = 246

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 83/180 (46%), Gaps = 44/180 (24%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  TLQGEG  AG+ A F R   CNL            C +CDT +         R
Sbjct: 22  ISEIFGPTLQGEGPSAGKSAAFVRLGACNL-----------ACVWCDTSYT----WDSSR 66

Query: 65  YNVDQLADLIEEQWITGEKEGR-------YCVLTGGEPLLQV--DVPLIQALNKRGFEIA 115
           Y  D  ++L+ +   T E   +         V+TGGEP LQ      L +A+ + G  + 
Sbjct: 67  Y--DLASELVAKP--TAEVADKALSFGVPLVVITGGEPALQAVEAARLAEAVTRSGSAVE 122

Query: 116 VETNGTIEPPQG-----IDWICVSPKAGCDLKIKGGQ-ELKLVFP---QVNVSPENYIGF 166
           +ET+G++  P G     +  I VSPK    L   GG+ + +L +P    ++V P + + F
Sbjct: 123 LETSGSL--PLGPLADAVRLIVVSPK----LANAGGRPQARLRWPVLEAISVLPHSVLKF 176


>gi|168704078|ref|ZP_02736355.1| radical activating enzyme [Gemmata obscuriglobus UQM 2246]
          Length = 242

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 57/120 (47%), Gaps = 27/120 (22%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EI+L++QGE   AG   VF R S C+           ++CR+CDT     QGT+  R 
Sbjct: 33  VHEIYLSVQGESTFAGLPCVFVRTSVCD-----------SRCRWCDTPHAFTQGTRVPRA 81

Query: 66  NVDQLADLIEEQWITGEKEGRYCVL---TGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
            V             G+     C L   TGGEPLLQ DV PL+  L   G  + +ET+G 
Sbjct: 82  EV------------LGKVLSFGCPLVEITGGEPLLQPDVLPLMSELCAAGKTVLLETSGA 129


>gi|16082343|ref|NP_394815.1| ATP binding cassette transporter, ExsD protein related
           [Thermoplasma acidophilum DSM 1728]
 gi|10640702|emb|CAC12480.1| ATP binding cassette transporter, ExsD protein related
           [Thermoplasma acidophilum]
          Length = 209

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF ++QGEG +AG   +F R + CN+           +C +CDT +       G   
Sbjct: 3   ITEIFHSIQGEGPYAGLPMLFVRTNVCNI-----------RCEWCDTKY---SFYGGKEI 48

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
            + +L  +++E      KEG  C  TGGEPL+Q D +  ++++   G  + +ETNGTI 
Sbjct: 49  PLSELLGIVKEA-----KEGWVC-FTGGEPLVQRDALAFVKSVVDMGKNVLIETNGTIS 101


>gi|294828448|ref|NP_714217.2| organic radical activating enzyme [Leptospira interrogans serovar
           Lai str. 56601]
 gi|293386302|gb|AAN51235.2| organic radical activating enzyme [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 237

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 100/239 (41%), Gaps = 50/239 (20%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           S+ EI+L+L GEG   G   +F R +GC+L  G    R      +CDT +  +    G  
Sbjct: 7   SVHEIYLSLSGEGISTGIPTIFVRMAGCSLRCGMTVGR----KLWCDTPY-ALSPKAGEE 61

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--------LQVDVPLIQALNKRGF--EI 114
            +V+Q+ D I+E      +     +LTGGEPL        + +   + +  N  GF    
Sbjct: 62  MSVNQVLDKIQELSAVNIQ----ILLTGGEPLEGRNREFSITLGNEIFRIRNSSGFYPRP 117

Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKG-GQELKLVFPQVNV-----SPENYIGF-- 166
            VETNG  E  +G+D    +     D K+ G G E ++    + +     +P + I F  
Sbjct: 118 RVETNGA-ESIEGMDQFVFT----LDYKLPGSGMEDRMNLKNLEIYKERKNPLDEIKFVI 172

Query: 167 ----DFER-------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
               DFER                 P+ G    E     I Y       RLS+QTHK+I
Sbjct: 173 RDKNDFERCLEIIEKHALVGNLLASPVQGELSPEILAEWIKYSL-GSGLRLSIQTHKYI 230


>gi|222445352|ref|ZP_03607867.1| hypothetical protein METSMIALI_00980 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350087|ref|ZP_05975504.1| coenzyme PQQ synthesis protein III [Methanobrevibacter smithii DSM
           2374]
 gi|222434917|gb|EEE42082.1| hypothetical protein METSMIALI_00980 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860873|gb|EFC93171.1| coenzyme PQQ synthesis protein III [Methanobrevibacter smithii DSM
           2374]
          Length = 232

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 20/139 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR- 64
           I EIF + QGEG   G+  +F RF+GCNL            C +CDT+    +  K G+ 
Sbjct: 5   IIEIFSSFQGEGLFIGQRQIFVRFAGCNL-----------NCNYCDTN--DSKSEKSGKL 51

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
             VD++   IE+       +      TGGEP L  +  + +   +   +I +ETNGT+  
Sbjct: 52  MTVDEVLAAIEK---VRTPDCHVISFTGGEPSLYPEF-INEVARQTDLKILLETNGTL-- 105

Query: 125 PQGIDWICVSPKAGCDLKI 143
           P+ ID+I        D+K+
Sbjct: 106 PEKIDFIEKLDIVSLDIKL 124


>gi|20092988|ref|NP_619063.1| hypothetical protein MA4197 [Methanosarcina acetivorans C2A]
 gi|19918305|gb|AAM07543.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 255

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 61/131 (46%), Gaps = 32/131 (24%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV--------- 55
           SIKEIF ++QGEG + G    F RFSGCNL            C +CDT+F          
Sbjct: 10  SIKEIFCSVQGEGPYVGVRQAFVRFSGCNL-----------NCNYCDTNFENLGTCDYEI 58

Query: 56  ----GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111
               GI        NV++L  L++       K+     LTGGEPLL  D   I+ L K  
Sbjct: 59  IEGNGIFEKIPNPINVEKLESLLQPF-----KKLHSVSLTGGEPLLHAD--FIEKL-KLP 110

Query: 112 FEIAVETNGTI 122
             + +E+N T+
Sbjct: 111 VPLYLESNMTL 121


>gi|148244548|ref|YP_001219242.1| organic radical activating enzyme [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326375|dbj|BAF61518.1| organic radical activating enzyme [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 213

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 21/119 (17%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +I EIF ++QGE    G  +VF R +GC L           +C +CDT++    G     
Sbjct: 7   NINEIFYSIQGEAREVGLPSVFIRLTGCPL-----------KCTYCDTEY-AFHGN---- 50

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
            N+ ++  +I E     + +  Y  +TGGEPLLQ +   L+  L +  +++++ET+G+I
Sbjct: 51  -NLMEIDAIISE---IKQYDTTYICVTGGEPLLQKNCYLLLDRLVENNYQVSLETSGSI 105


>gi|254468966|ref|ZP_05082372.1| radical SAM domain protein [beta proteobacterium KB13]
 gi|207087776|gb|EDZ65059.1| radical SAM domain protein [beta proteobacterium KB13]
          Length = 212

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 30/178 (16%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    I EIF ++QGE    G+  VF R +GC +           +C +CDT +   +G 
Sbjct: 1   MSTLRINEIFYSIQGESSRIGKPTVFVRLTGCPM-----------RCTYCDTAYAFHEGQ 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119
           +     + Q     +  ++T         +TGGEPL Q + + L+  L + G+++++ET 
Sbjct: 50  QQEIEEIIQEIKQFDTNYVT---------VTGGEPLAQKNCIDLMNQLCELGYQVSLETG 100

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF-PQV-NVSPENYIGF---DFERFS 172
           G ++    I  +    K   D+K     E K  F P + N+   + I F   D+E FS
Sbjct: 101 GALD----IKDVHAKVKIILDVKTPKSNEDKNNFWPNLENIRTNDEIKFVIQDYEDFS 154


>gi|223038702|ref|ZP_03608995.1| FO synthase subunit 2 2 [Campylobacter rectus RM3267]
 gi|222880104|gb|EEF15192.1| FO synthase subunit 2 2 [Campylobacter rectus RM3267]
          Length = 254

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 18/130 (13%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNL----WSGREQDRLSAQCRF-CDTDFVGIQGTKG 62
           E FL++QGEG  +GR+A+F RF+GCNL    +  R     + +    CDT    ++    
Sbjct: 7   ENFLSIQGEGASSGRLAIFLRFAGCNLNCAGFGVRAISPKTGETLVGCDT----VRAVFT 62

Query: 63  GRYNVDQLADLIEEQWITGE-----KEGRYCVLTGGEPLLQ----VDVPLIQALNKRGFE 113
           G ++  +++   E   IT       ++    V+TGGEPLL     + +  +      G+E
Sbjct: 63  GHFSYQKISRADELAKITQNLSVNLRQKPILVITGGEPLLHHKNRILLDFLDFATSEGYE 122

Query: 114 IAVETNGTIE 123
              ETNGTIE
Sbjct: 123 PHFETNGTIE 132


>gi|189347255|ref|YP_001943784.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
 gi|189341402|gb|ACD90805.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
          Length = 220

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 21/117 (17%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           SI EIF ++QGE   AG    F R +GC              CR+CDT +    GT+   
Sbjct: 4   SISEIFHSIQGESSFAGWPCAFVRLAGCG-----------HGCRYCDTTYAEKPGTEMET 52

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
             + +  D I  Q +          +TGGEPLLQ +V PL++ L  R  ++ +ET G
Sbjct: 53  DEIFEKIDEIGAQLVE---------ITGGEPLLQKEVYPLMERLCDRKEKVLLETGG 100


>gi|262373096|ref|ZP_06066375.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Acinetobacter junii SH205]
 gi|262313121|gb|EEY94206.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Acinetobacter junii SH205]
          Length = 236

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G   VF R +GC L           +C +CDT +   +G  G R 
Sbjct: 20  ITEIFYSLQGEANTFGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERQ 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           +++ + +         + +  Y  +TGGEPL Q + + L+Q L   GF++++ET+G ++
Sbjct: 66  SLEHIIE------TASQFKTPYICVTGGEPLAQPNCLVLLQRLCDLGFDVSLETSGALD 118


>gi|293376550|ref|ZP_06622778.1| radical SAM domain protein [Turicibacter sanguinis PC909]
 gi|325839435|ref|ZP_08166874.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Turicibacter sp. HGF1]
 gi|292644776|gb|EFF62858.1| radical SAM domain protein [Turicibacter sanguinis PC909]
 gi|325490555|gb|EGC92871.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Turicibacter sp. HGF1]
          Length = 222

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 19/122 (15%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y + E F+++ GEG  AG++A F RF  CNL           +C +CDT +      +G
Sbjct: 1   MYQVIEKFISIDGEGPCAGQLAAFIRFKNCNL-----------RCDWCDTCYSYDGSVEG 49

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL--NKRGFEIAVETNG 120
              +  ++   ++E  +       +  LTGGEPL+Q  + ++  +    +   I +ETNG
Sbjct: 50  ENLSPLEIYHFVKENKVN------HVTLTGGEPLIQPQIEVLIGILAADKELTIHIETNG 103

Query: 121 TI 122
           ++
Sbjct: 104 SV 105


>gi|157273449|gb|ABV27348.1| radical SAM domain protein [Candidatus Chloracidobacterium
           thermophilum]
          Length = 210

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 21/116 (18%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF ++QGE  +AG    F R +GC+L           +C +CD+++     T G   
Sbjct: 3   ITEIFFSIQGESSYAGLPCAFVRTTGCDL-----------RCTWCDSEYT---FTGGTHM 48

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           +V+++ + +           R   LTGGEPLLQ D+  L + L + G+ + +ET G
Sbjct: 49  SVEEILERVRAY------PTRLVELTGGEPLLQKDIYELSERLLEEGYTVLIETGG 98


>gi|90417119|ref|ZP_01225047.1| radical activating enzyme family protein [marine gamma
           proteobacterium HTCC2207]
 gi|90331135|gb|EAS46391.1| radical activating enzyme family protein [marine gamma
           proteobacterium HTCC2207]
          Length = 216

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 22/125 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G   VF R +GC L           +C +CDT +    G+K    
Sbjct: 8   ITEIFHSLQGETSTVGLPTVFVRLTGCPL-----------RCGYCDTAYAFEGGSKW--- 53

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
               L+D++       +   +Y  +TGGEPL Q   + L++ L   G+ +++ET+G + P
Sbjct: 54  ---TLSDILS---TVADYGAKYVTVTGGEPLAQPQCIELLKQLCDLGYRVSLETSGAM-P 106

Query: 125 PQGID 129
            + +D
Sbjct: 107 VEDVD 111


>gi|312136463|ref|YP_004003800.1| radical sam domain protein [Methanothermus fervidus DSM 2088]
 gi|311224182|gb|ADP77038.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088]
          Length = 232

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 18/118 (15%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR- 64
           + EIF ++QGEG   G+  +F RF+GCNL            C +CDT     +  K G+ 
Sbjct: 5   VYEIFSSIQGEGLLVGKRQIFVRFAGCNL-----------DCIYCDTP--KSRDPKNGKL 51

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++VD+L   ++   +T +       LTGGEPLL  D  + + L K  F   +ETNG++
Sbjct: 52  FSVDELYKSVKS-LVTPDLHS--ICLTGGEPLLYADF-IKKFLKKCEFNALLETNGSL 105


>gi|54294940|ref|YP_127355.1| hypothetical protein lpl2019 [Legionella pneumophila str. Lens]
 gi|53754772|emb|CAH16259.1| hypothetical protein lpl2019 [Legionella pneumophila str. Lens]
          Length = 217

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 21/117 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G + VF R +GC L           +C++CDT +       GG  
Sbjct: 10  ITEIFHSLQGESVTVGLLTVFVRLTGCPL-----------RCQYCDTAY----AFSGGE- 53

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
            V ++ D++ +       + ++  +TGGEPL Q   +PL+  L   G+ +++ET+G 
Sbjct: 54  -VVEIDDILNK---VASYQCQHVCVTGGEPLAQPGCIPLLSKLCDAGYSVSLETSGA 106


>gi|192361070|ref|YP_001983293.1| radical SAM domain-containing protein [Cellvibrio japonicus
           Ueda107]
 gi|190687235|gb|ACE84913.1| radical SAM domain protein [Cellvibrio japonicus Ueda107]
          Length = 252

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G   VF R +GC L           +C +CD+++    G    R 
Sbjct: 44  ITEIFYSLQGEARTVGLPTVFVRLTGCPL-----------RCGYCDSEYAFYGGE---RL 89

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           ++D++   +           R+  +TGGEP+ Q + V L++ L   G+ +++ET+G + P
Sbjct: 90  SLDEILARV------ARYHPRHVCVTGGEPMAQRECVTLLKMLCDAGYGVSLETSGAM-P 142

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
            + +D     P+     DLK  G  E+
Sbjct: 143 LEDVD-----PRVSKVMDLKTPGSGEV 164


>gi|313683431|ref|YP_004061169.1| radical sam domain protein [Sulfuricurvum kujiense DSM 16994]
 gi|313156291|gb|ADR34969.1| Radical SAM domain protein [Sulfuricurvum kujiense DSM 16994]
          Length = 252

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 65/129 (50%), Gaps = 15/129 (11%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNL----WSGREQDRLSAQCRFCDTDF-VGIQGTKG 62
           E F ++QGEG + G  ++F RF GCNL    +  RE     ++   CDT + V  +G   
Sbjct: 6   EHFYSVQGEGKYTGVPSLFFRFGGCNLKCEGFGCRESAPDGSEVLGCDTVYAVDRKGFGE 65

Query: 63  GRYNVDQLADLIEEQWI-TGEKEGRY--CVLTGGEPLLQVDVPL----IQALNKRGFEIA 115
               +++L  LI   WI  G +   +   VLTGGEPL+  + P+    I+ L   G  + 
Sbjct: 66  LWMEIEELQSLI---WIMNGYRLPPHVDVVLTGGEPLIYANEPIFVEFIEYLIAHGHRVT 122

Query: 116 VETNGTIEP 124
            ETN TI P
Sbjct: 123 FETNATIAP 131


>gi|206889913|ref|YP_002249329.1| radical activating enzyme [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741851|gb|ACI20908.1| radical activating enzyme [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 208

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 36/158 (22%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           EIF ++QGE   AG   VF R +GCNL           +C +CDT +   +G +    ++
Sbjct: 5   EIFTSIQGESSLAGIPMVFVRLTGCNL-----------RCSYCDTKYAYYEGEE---LSI 50

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           +++ + I           +Y  +TGGEPLLQ +   LI  L K    + +ETNG+I   +
Sbjct: 51  NKVLEKIHSFPF------QYVEITGGEPLLQDETYKLINELVK-SHNVLIETNGSIPIEK 103

Query: 127 GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYI 164
                 V+P+    + IK         P   +S +NYI
Sbjct: 104 ------VNPEVKIIMDIKT--------PGSGMSEKNYI 127


>gi|78043751|ref|YP_359801.1| radical SAM domain-containing protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995866|gb|ABB14765.1| radical SAM domain protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 238

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 31/136 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           + +I EIF +LQGEG +AG   +F RFSGCNL            C +CDT+       K 
Sbjct: 1   MANIVEIFPSLQGEGLYAGVSTLFIRFSGCNL-----------NCSYCDTEDAR---EKR 46

Query: 63  GRYNVDQ--------LADLIEEQWITGEKEGR------YCVLTGGEPLLQVDVPLIQALN 108
            R+ V +        L  +  E+ +   +E           LTGGEPLL     L + L 
Sbjct: 47  ERFTVTKEDGSLLEFLNPVTPEKLVEILRENYDFTYFPQLALTGGEPLLHASF-LKEFLP 105

Query: 109 KRGF--EIAVETNGTI 122
           K  +  E+ +ETNGT+
Sbjct: 106 KLSYPGEVLLETNGTL 121


>gi|148643115|ref|YP_001273628.1| coenzyme PQQ synthesis protein [Methanobrevibacter smithii ATCC
           35061]
 gi|148552132|gb|ABQ87260.1| coenzyme PQQ synthesis protein, SAM family [Methanobrevibacter
           smithii ATCC 35061]
          Length = 232

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 20/139 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR- 64
           I EIF + QGEG   G+  +F RF+GCNL            C +CDT+    +  K G+ 
Sbjct: 5   IIEIFSSFQGEGLFIGQRQIFVRFAGCNL-----------NCSYCDTN--DSKSEKSGKL 51

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
             VD +   IE        +      TGGEP L  +  + +   +   +I +ETNGT+  
Sbjct: 52  MTVDDVLAAIEN---VRTPDCHVISFTGGEPSLYPEF-INEVARQTDLKILLETNGTL-- 105

Query: 125 PQGIDWICVSPKAGCDLKI 143
           P+ ID+I        D+K+
Sbjct: 106 PEKIDFIEKLDIVSLDIKL 124


>gi|313673522|ref|YP_004051633.1| radical sam domain protein [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940278|gb|ADR19470.1| Radical SAM domain protein [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 237

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 66/147 (44%), Gaps = 27/147 (18%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-----VGIQGT 60
           IKE+F ++QGEG + G + +F RFSGC           S  C+ CDTD+         GT
Sbjct: 12  IKEVFTSIQGEGKYVGALQLFVRFSGC-----------SIGCKGCDTDYSFTDSFDFNGT 60

Query: 61  K--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAV 116
                    ++LA +I +             +TGGEPLLQ D    LI  L   G+ I +
Sbjct: 61  SVLSNPIKPERLACIIYDHIKPNSIHS--ISITGGEPLLQKDFLKELIFYLKGYGYRIFL 118

Query: 117 ETNGTI-----EPPQGIDWICVSPKAG 138
           ET+G       E    +D I +  K G
Sbjct: 119 ETSGFFIDRLNEVGDMVDIISLDFKLG 145


>gi|48478135|ref|YP_023841.1| 6-pyruvoyltetrahydropterin 2'-reductase [Picrophilus torridus DSM
           9790]
 gi|48430783|gb|AAT43648.1| 6-pyruvoyltetrahydropterin 2'-reductase [Picrophilus torridus DSM
           9790]
          Length = 249

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 19/133 (14%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           ++F ++QGEG +AG+ A F RF  CNL+ G E+          D +++    +    +  
Sbjct: 7   DLFYSIQGEGRYAGKPAFFIRFPECNLFCGLEKPLKPGN---YDQEYINNLKSVNAGWVC 63

Query: 68  DQLADLIEE----------QWITGEKEGRY-CVLTGGEPLLQVD--VPLIQALNKRGFE- 113
           D +A  +             +I+    G Y  V TGGEPL+     + +I A+N +  + 
Sbjct: 64  DTMAQWLSNGFQIDINDIVDYISRLSSGSYNIVFTGGEPLINRSNILKIIDAVNSKNLKP 123

Query: 114 --IAVETNGTIEP 124
               +ETNGT+EP
Sbjct: 124 YIYEIETNGTMEP 136


>gi|189424905|ref|YP_001952082.1| radical SAM protein [Geobacter lovleyi SZ]
 gi|189421164|gb|ACD95562.1| Radical SAM domain protein [Geobacter lovleyi SZ]
          Length = 254

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 71/157 (45%), Gaps = 34/157 (21%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG----TKGG 63
           EIF +LQGEG  AG   +F RF GCNL            C FCDTDF         T  G
Sbjct: 15  EIFSSLQGEGVLAGYRQIFVRFPGCNL-----------DCSFCDTDFEAQTACRVETTPG 63

Query: 64  RYNVDQLADLIEEQWITGEKEGRYC----------VLTGGEPLLQVDVPLIQALNKRG-- 111
                +LA  +  + + G    R+C           +TGGEP+L  D+ L + L +    
Sbjct: 64  SGQFQELAQPVSLETLLG-IITRWCKQLPNAHHSISITGGEPMLHADL-LARWLPELNIL 121

Query: 112 FEIAVETNGTIEP--PQGIDWICVSPKAGCDLKIKGG 146
             I +ETNGT+    P+ I+ + V      D+K+ G 
Sbjct: 122 LPIHLETNGTLPEALPRLIEHLDV---ISMDIKLPGS 155


>gi|283853629|ref|ZP_06370864.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
 gi|283570991|gb|EFC19016.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
          Length = 211

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 62/142 (43%), Gaps = 31/142 (21%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF ++QGE   AG    F R SGCNL            C +CDT           RY
Sbjct: 5   VHEIFASIQGESSFAGWPCAFLRLSGCNL-----------DCVWCDT-----------RY 42

Query: 66  NVDQLADL-IEEQWITGEKEGRYCV-LTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
                 ++ + E        G   V LTGGEPLL  ++P L +AL   G  + VETNG+ 
Sbjct: 43  AAASFVEMTVPEAAAALLASGLPLVELTGGEPLLAPELPALARALLDAGATVLVETNGS- 101

Query: 123 EPPQGIDWICVSPKAGCDLKIK 144
                 D   + P+A   L IK
Sbjct: 102 -----RDIAVLDPRAIAILDIK 118


>gi|251771685|gb|EES52260.1| Radical SAM family protein [Leptospirillum ferrodiazotrophum]
          Length = 213

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 21/131 (16%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I E F ++QGE   AG    F R +GC L           +CR+CDT +   +G + 
Sbjct: 1   MMRINETFFSIQGESTFAGWPCFFIRTTGCPL-----------RCRWCDTTYSFYEGEE- 48

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
                  L  L++E             +TGGEP    ++P L++ L   G  + +ET+G 
Sbjct: 49  -----RTLDSLVDEAL---SHPAPLVEVTGGEPFSAPELPRLVEKLLDAGKTVLIETSGA 100

Query: 122 IEPPQGIDWIC 132
           +  PQG+D  C
Sbjct: 101 LPVPQGLDRRC 111


>gi|331007035|ref|ZP_08330269.1| Queuosine Biosynthesis QueE Radical SAM [gamma proteobacterium
           IMCC1989]
 gi|330419162|gb|EGG93594.1| Queuosine Biosynthesis QueE Radical SAM [gamma proteobacterium
           IMCC1989]
          Length = 218

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 26/139 (18%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF ++QGE    G+  VF R +GC L           +C +CD+++    G +    
Sbjct: 10  ITEIFFSIQGEAQTVGKPTVFVRLTGCPL-----------RCHYCDSEYAFYGGERMS-- 56

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT--- 121
               L D++ +    G     Y  +TGGEPL Q +   L+  L + G ++++ET+G    
Sbjct: 57  ----LDDIMAKVMSYG---ATYVCVTGGEPLAQPEARTLLAQLCENGLQVSLETSGALAI 109

Query: 122 --IEPPQGIDWICVSPKAG 138
             I+P   +     +P +G
Sbjct: 110 DNIDPRVSVVMDVKTPSSG 128


>gi|54297969|ref|YP_124338.1| hypothetical protein lpp2024 [Legionella pneumophila str. Paris]
 gi|53751754|emb|CAH13176.1| hypothetical protein lpp2024 [Legionella pneumophila str. Paris]
          Length = 217

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 21/117 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G   VF R +GC L           +C++CDT +       GG  
Sbjct: 10  ITEIFHSLQGESVTVGLPTVFVRLTGCPL-----------RCQYCDTAY----AFSGGE- 53

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
            V ++ D++ +       + ++  +TGGEPL Q   VPL+  L   G+ +++ET+G 
Sbjct: 54  -VVEIDDILNK---VASYQCQHVCVTGGEPLAQPGCVPLLSKLCDAGYSVSLETSGA 106


>gi|260892494|ref|YP_003238591.1| Radical SAM domain protein [Ammonifex degensii KC4]
 gi|260864635|gb|ACX51741.1| Radical SAM domain protein [Ammonifex degensii KC4]
          Length = 251

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 31/166 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           + L  ++EIF ++QGEG + G   +F RF+GCNL            CR+CDT    I  T
Sbjct: 8   VALAPLREIFSSVQGEGPYVGVRHLFVRFAGCNL-----------TCRYCDTPR-DIPAT 55

Query: 61  -----KGGRYNVDQLAD--------LIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQ 105
                  GR +   L +        L+    +   + G    LTGGEPLL       L+ 
Sbjct: 56  CRVEVVAGRQHFFHLPNPLTPEEVVLLVSNLLRQLRHG-AVALTGGEPLLYPAFLRELLP 114

Query: 106 ALNKRGFEIAVETNGTIEPPQGIDWIC-VSPKAGCDLKIKGGQELK 150
           AL + G  + +ETNGT+  P  ++ +  +      DLK+     LK
Sbjct: 115 ALRQIGCRVYLETNGTL--PYALEEVADLVDVVAMDLKLPSSTGLK 158


>gi|307823680|ref|ZP_07653908.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
 gi|307734974|gb|EFO05823.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
          Length = 213

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 23/125 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    I EIF +LQGE    G   VF R +GC L           +C +CDT +    G 
Sbjct: 1   MSSLRITEIFHSLQGESNTVGLPTVFIRLTGCPL-----------RCVYCDTAYAFTGGE 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
           K G          I+      E+ G  Y  +TGGEPL Q   + L+  L  +G+ +++ET
Sbjct: 50  KIG----------IDAIIAQAEQYGTPYITVTGGEPLAQPSCLELMTKLLDKGYVVSLET 99

Query: 119 NGTIE 123
           +G ++
Sbjct: 100 SGALD 104


>gi|315638082|ref|ZP_07893267.1| radical SAM domain protein [Campylobacter upsaliensis JV21]
 gi|315481930|gb|EFU72549.1| radical SAM domain protein [Campylobacter upsaliensis JV21]
          Length = 247

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 7/122 (5%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCN---LWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           E FL++QGEG  AGR+AVF RF+ CN   L  G ++ +   +   CDT            
Sbjct: 5   ESFLSIQGEGKFAGRLAVFVRFANCNFNCLGFGVKKQKEGRELVGCDTLRAVFTKEYQNT 64

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----VPLIQALNKRGFEIAVETNG 120
           Y      +L        +      V+TGGEPLL       +  I+ L +  FE+  ETN 
Sbjct: 65  YENLNAKELFLRVLKMAKDLKPIIVITGGEPLLHHKKSEFLKFIKLLLEAKFEVHFETNA 124

Query: 121 TI 122
           +I
Sbjct: 125 SI 126


>gi|13541127|ref|NP_110815.1| organic radical activating protein [Thermoplasma volcanium GSS1]
 gi|14324514|dbj|BAB59441.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 209

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 21/118 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF ++QGEG   G   +F R + CN+           +C +CDT +    G +    
Sbjct: 3   ITEIFHSIQGEGTLIGIPMLFVRTNVCNI-----------RCEWCDTKYSFYGGREIALS 51

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           ++  +    +EQW+           TGGEPL+Q D +  ++   K G +I +ETNGT+
Sbjct: 52  DILNIVKEAKEQWVC---------FTGGEPLVQRDALSFVEGSLKLGKKILIETNGTV 100


>gi|325279462|ref|YP_004252004.1| Radical SAM domain-containing protein [Odoribacter splanchnicus DSM
           20712]
 gi|324311271|gb|ADY31824.1| Radical SAM domain protein [Odoribacter splanchnicus DSM 20712]
          Length = 267

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 14/132 (10%)

Query: 12  TLQGEGGHAGRVAVFCRFSGCNLWSG-REQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL 70
           T+QGEG   G  ++F R +GCNL    +  D LS+    CD+ +   Q     + +V+  
Sbjct: 33  TVQGEGKLCGIPSLFVRLAGCNLQCHWQTSDGLSSP---CDSAYAAYQLKDTRQVSVEA- 88

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQAL-NKRGFEIAVETNGTIEPPQ- 126
              I    +      R+ VLTGGEPLLQV     L Q L +   F + +ETN T+  P+ 
Sbjct: 89  ---IYTTLLQNAGPIRHIVLTGGEPLLQVKELKALCQKLKSDYRFHLTLETNATLFDPEL 145

Query: 127 --GIDWICVSPK 136
              ID   +SPK
Sbjct: 146 ARYIDLFSLSPK 157


>gi|94971669|ref|YP_593717.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553719|gb|ABF43643.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 226

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 104/246 (42%), Gaps = 73/246 (29%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR- 64
           I EI+ +LQGE  + G   +F R + CNL           +C +CD+++      KGGR 
Sbjct: 3   ITEIYRSLQGESSYTGIPCIFVRLTACNL-----------RCAWCDSEYT----FKGGRK 47

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT- 121
            + D++   +++    G  E     +TGGEPLLQ    VP ++ L   G+++ +ET+G  
Sbjct: 48  MSEDEIFAEVQKLAPGGLVE-----ITGGEPLLQERELVPFMERLVASGYKVLIETSGER 102

Query: 122 --IEPPQG----IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF------DFE 169
                PQ     +D  C +   G   +I+    L         +P + I F      D+E
Sbjct: 103 PLANVPQDVVKIVDVKCPASGEGGSFRIENLDAL---------TPHDEIKFVISDRADYE 153

Query: 170 RFSLQPMDGPFLEENTNLAI---------------SYCFQNPK----W--------RLSV 202
            F+ +      LE   +  I               S+C  +P+    W        RL +
Sbjct: 154 -FAREFTRQHGLENKVSSVIFSPAFRKDARGTRDASHCLVDPQDLANWVLEDQLDVRLGL 212

Query: 203 QTHKFI 208
           QTHKFI
Sbjct: 213 QTHKFI 218


>gi|297617391|ref|YP_003702550.1| radical SAM protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145228|gb|ADI01985.1| Radical SAM domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 243

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 28/136 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56
           MK Y + EI  ++QGEG  AG   +F RF GCNL           +C +CDT  VG    
Sbjct: 1   MKAY-LSEITESIQGEGTLAGSRQIFLRFCGCNL-----------RCPYCDT--VGSLSK 46

Query: 57  -----IQGTKGGRYNVDQLADLIEEQWI---TGEKEGRYCVLTGGEPLLQVDV--PLIQA 106
                I    G + +  + A+ +    +   T   + R+  LTGGEPLL  D    L   
Sbjct: 47  TPSCKIFLKPGSKNDFREYANPLSISDVVKATANFDTRWVSLTGGEPLLWADYLKRLAPI 106

Query: 107 LNKRGFEIAVETNGTI 122
           L  +G+ + +ETNGT+
Sbjct: 107 LVSKGYRMLLETNGTL 122


>gi|254497309|ref|ZP_05110117.1| hypothetical protein LDG_1789 [Legionella drancourtii LLAP12]
 gi|254353537|gb|EET12264.1| hypothetical protein LDG_1789 [Legionella drancourtii LLAP12]
          Length = 291

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 79/181 (43%), Gaps = 32/181 (17%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
           F TLQGEG + G  A F R + CNL            C FCDT F   +        V+ 
Sbjct: 27  FFTLQGEGPYRGHPAYFIRLAKCNL-----------ACSFCDTYFDSGEWRSFSSLLVEA 75

Query: 70  ---LADLIEEQ------WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA-VETN 119
              +A+  +++      W  G  +    V+TGGEP LQ +V    A  +R F+   +E+N
Sbjct: 76  DVVIAEFFKQRNLPIPAWGQGVAKKIVLVITGGEPSLQNNVSAFLAEAQRYFQYTQIESN 135

Query: 120 GTIE----PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNV-SPENYIGFDFERFSLQ 174
           GT      PP     + VSPK       K G  ++ + P V + +  +Y+ F      ++
Sbjct: 136 GTSVLSDLPPSTT--LVVSPKC----LEKNGAAVRYLEPNVKMLARADYLKFVMSAPEVE 189

Query: 175 P 175
           P
Sbjct: 190 P 190


>gi|15679238|ref|NP_276355.1| coenzyme PQQ synthesis protein III [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622338|gb|AAB85716.1| coenzyme PQQ synthesis protein III [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 247

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 19/139 (13%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F ++QGEG   GR  +F RF+GCNL            C +CDT       + G  +
Sbjct: 8   IVEVFSSIQGEGLLVGRRQIFVRFAGCNL-----------NCSYCDTP-ESRDPSAGRLF 55

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
              +L ++I E  IT +       +TGGEPLL  D  + + L +      +ETNG++  P
Sbjct: 56  TAPELTEII-EGLITPDFHS--ISITGGEPLLYPDF-ITELLEESPHRTLLETNGSL--P 109

Query: 126 QGIDWIC-VSPKAGCDLKI 143
              + I  +   A  D+KI
Sbjct: 110 SNAERIAHLFDYASVDIKI 128


>gi|156974667|ref|YP_001445574.1| hypothetical protein VIBHAR_02385 [Vibrio harveyi ATCC BAA-1116]
 gi|156526261|gb|ABU71347.1| hypothetical protein VIBHAR_02385 [Vibrio harveyi ATCC BAA-1116]
          Length = 216

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 88/229 (38%), Gaps = 41/229 (17%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68
           +F T+QGEG   G  AVF R   C +            C +CDT        K  R   D
Sbjct: 1   MFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWYAEEKDQRQIGD 49

Query: 69  QLADLIEE-QWITGEKE------------GRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
            L    +   W     E             ++ V+TGGEP +     L  A  +   +  
Sbjct: 50  ILVKTEDSPTWCFASAEDIVAEYKKQGFNAKHVVITGGEPCIYDLRALTAAFEEMDCQCQ 109

Query: 116 VETNGTIEPPQG-IDWICVSPKAGCDLKI-------KGGQELKL-VFPQVNVSPENYIGF 166
           +ET+GT E       W+ VSPK     K+       +   E+K  V  Q ++   + +  
Sbjct: 110 IETSGTSEVVTSESTWVTVSPKVAMKGKLPVLKSALERANEIKHPVGTQKDIDQLDVLLA 169

Query: 167 DFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             E       +LQP+        T L I  C     WRLSVQTHK++ I
Sbjct: 170 SAEIGEKTVIALQPISQK--PRATQLCIDTCVAR-NWRLSVQTHKYLSI 215


>gi|239939759|ref|ZP_04691696.1| radical SAM family protein [Streptomyces roseosporus NRRL 15998]
 gi|239986242|ref|ZP_04706906.1| radical SAM family protein [Streptomyces roseosporus NRRL 11379]
          Length = 235

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 61/131 (46%), Gaps = 26/131 (19%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-GIQGTKGG 63
           + EIF  T+QGEG  AGR  VF R  GCNL            C +CDT +    +GT   
Sbjct: 5   VNEIFGPTVQGEGPSAGRQCVFLRLGGCNL-----------SCHWCDTPYTWDWKGTSDE 53

Query: 64  RYNVDQLADL--------IEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFE 113
           +   D   +L        +EE    G       V++GGEPL Q     P+++ L + G  
Sbjct: 54  KTAFDPRKELHNRDAGEVVEELLALGTG---LVVISGGEPLSQQRRLRPVLKGLLEAGVT 110

Query: 114 IAVETNGTIEP 124
           +  ETNGT+ P
Sbjct: 111 VEFETNGTVVP 121


>gi|195953034|ref|YP_002121324.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932646|gb|ACG57346.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 212

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 97/235 (41%), Gaps = 53/235 (22%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD----TDFVGIQGTK 61
           I E+F ++QGEG   G  A+F RF GCNL           +C +CD     DF   + TK
Sbjct: 2   INEVFYSIQGEGFLIGTPALFVRFQGCNL-----------RCVWCDEKNALDFD--KTTK 48

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
                ++++ D      I         VLTGGEPLL  D + +          I +ETN 
Sbjct: 49  SYTKAIEEIED------ILAAHNPSLIVLTGGEPLLNEDFINIFSYFKSLDKTIQIETNA 102

Query: 121 TIEPPQ--------GIDWICVSPKAGCD-------LKIKGGQELKLVFPQ-VN--VSPEN 162
           TI               +I +SPK   +       L      ELK+V  + +N  +    
Sbjct: 103 TILKDDIETLFKTYARTYITLSPKYISNYIIHPKFLAFDKNIELKIVVDEHLNEGILERE 162

Query: 163 YIGFDFER--FSLQPM----DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           Y+    E+    LQP+    +  FL++   LA  +       R+  Q HK +G++
Sbjct: 163 YMKPFIEKGLLILQPLWENGNVKFLDKAIKLAEKF-----NTRIIPQMHKLLGLK 212


>gi|291443188|ref|ZP_06582578.1| radical SAM domain-containing protein [Streptomyces roseosporus
           NRRL 15998]
 gi|291346135|gb|EFE73039.1| radical SAM domain-containing protein [Streptomyces roseosporus
           NRRL 15998]
          Length = 241

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 61/131 (46%), Gaps = 26/131 (19%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-GIQGTKGG 63
           + EIF  T+QGEG  AGR  VF R  GCNL            C +CDT +    +GT   
Sbjct: 11  VNEIFGPTVQGEGPSAGRQCVFLRLGGCNL-----------SCHWCDTPYTWDWKGTSDE 59

Query: 64  RYNVDQLADL--------IEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFE 113
           +   D   +L        +EE    G       V++GGEPL Q     P+++ L + G  
Sbjct: 60  KTAFDPRKELHNRDAGEVVEELLALGTG---LVVISGGEPLSQQRRLRPVLKGLLEAGVT 116

Query: 114 IAVETNGTIEP 124
           +  ETNGT+ P
Sbjct: 117 VEFETNGTVVP 127


>gi|148359615|ref|YP_001250822.1| radical activating enzyme [Legionella pneumophila str. Corby]
 gi|296107657|ref|YP_003619358.1| Organic radical activating enzyme [Legionella pneumophila 2300/99
           Alcoy]
 gi|148281388|gb|ABQ55476.1| radical activating enzyme [Legionella pneumophila str. Corby]
 gi|295649559|gb|ADG25406.1| Organic radical activating enzyme [Legionella pneumophila 2300/99
           Alcoy]
          Length = 217

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 21/117 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G   VF R +GC L           +C++CDT +       GG  
Sbjct: 10  ITEIFHSLQGESVTVGLPTVFVRLTGCPL-----------RCQYCDTAY----AFSGGE- 53

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
            V ++ D++ +       + ++  +TGGEPL Q   +PL+  L   G+ +++ET+G 
Sbjct: 54  -VVEIDDILNK---VASYQCQHVCVTGGEPLAQPGCIPLLSKLCDAGYSVSLETSGA 106


>gi|307610772|emb|CBX00384.1| hypothetical protein LPW_21051 [Legionella pneumophila 130b]
          Length = 217

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 21/117 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G   VF R +GC L           +C++CDT +       GG  
Sbjct: 10  ITEIFHSLQGESVTVGLPTVFVRLTGCPL-----------RCQYCDTAY----AFSGGE- 53

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
            V ++ D++ +       + ++  +TGGEPL Q   +PL+  L   G+ +++ET+G 
Sbjct: 54  -VVEIDDILNK---VASYQCQHVCVTGGEPLAQPGCIPLLSKLCDAGYSVSLETSGA 106


>gi|163800817|ref|ZP_02194717.1| aconitate hydratase [Vibrio sp. AND4]
 gi|159175166|gb|EDP59963.1| aconitate hydratase [Vibrio sp. AND4]
          Length = 216

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 94/233 (40%), Gaps = 49/233 (21%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68
           +F T+QGEG   G  AVF R   C +            C +CDT     Q       +  
Sbjct: 1   MFETIQGEGVFTGVPAVFVRLQECPV-----------GCSWCDTK----QTWYAKEEDQR 45

Query: 69  QLADLI-----EEQW---------ITGEKEG---RYCVLTGGEPLLQVDVPLIQALNKRG 111
           Q+ D++        W         +  +K+G   ++ V+TGGEP +     L  A  +  
Sbjct: 46  QIGDILVKTEDSPTWCFASAQDIVVEYKKQGFNAKHIVITGGEPCIYDLRELTAAFEEMD 105

Query: 112 FEIAVETNGTIEP-PQGIDWICVSPKAGCD-----LKIKGGQELKLVFP--------QVN 157
            +  +ET+GT E       W+ VSPK         LK   G+  ++  P        Q++
Sbjct: 106 CQCQIETSGTSEVVASESTWVTVSPKVAMKGKLPILKSALGRANEIKHPVGTQKDIDQLD 165

Query: 158 VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           V   +    +    +LQP+        T L I  C     WRLSVQTHK++ I
Sbjct: 166 VLLASAEVGESTVIALQPISQK--PRATQLCIDTCIAR-NWRLSVQTHKYLSI 215


>gi|262379425|ref|ZP_06072581.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Acinetobacter
           radioresistens SH164]
 gi|262298882|gb|EEY86795.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Acinetobacter
           radioresistens SH164]
          Length = 236

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 23/120 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C +CDT +    G +    
Sbjct: 20  ITEIFYSLQGEANAAGLPTVFIRLTGCPL-----------RCTYCDTTYSFEGGVRQS-- 66

Query: 66  NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
                   +EE   T       Y  +TGGEPL Q + + L+Q L   G ++++ET+G ++
Sbjct: 67  --------LEEIIATARSYNTPYICVTGGEPLAQPNCLVLLQRLCDLGHKVSLETSGALD 118


>gi|255320799|ref|ZP_05361974.1| organic radical activating enzyme [Acinetobacter radioresistens
           SK82]
 gi|255302176|gb|EET81418.1| organic radical activating enzyme [Acinetobacter radioresistens
           SK82]
          Length = 236

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 23/120 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C +CDT +    G +    
Sbjct: 20  ITEIFYSLQGEANAAGLPTVFIRLTGCPL-----------RCTYCDTTYSFEGGVRQS-- 66

Query: 66  NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
                   +EE   T       Y  +TGGEPL Q + + L+Q L   G ++++ET+G ++
Sbjct: 67  --------LEEIIATARSYNTPYICVTGGEPLAQPNCLVLLQRLCDLGHKVSLETSGALD 118


>gi|21226857|ref|NP_632779.1| hypothetical protein MM_0755 [Methanosarcina mazei Go1]
 gi|20905160|gb|AAM30451.1| conserved protein [Methanosarcina mazei Go1]
          Length = 255

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 32/131 (24%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF---------- 54
           +++E+F ++QGEG + G    F RFSGCNL            C +CDT+F          
Sbjct: 10  NLREVFCSVQGEGPYVGMRQAFVRFSGCNL-----------SCNYCDTNFRNPGTYDYER 58

Query: 55  ---VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111
               G+        N+++L     E  +   K+     LTGGEPLL  D   I+ LN   
Sbjct: 59  VEGSGVFEKVSNPVNIEKL-----ESMLQPFKDLHSVSLTGGEPLLHAD--FIEKLNL-S 110

Query: 112 FEIAVETNGTI 122
             + +E+N T+
Sbjct: 111 VPLYLESNMTL 121


>gi|313894807|ref|ZP_07828367.1| radical SAM domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312976488|gb|EFR41943.1| radical SAM domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 243

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 32/157 (20%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-VGIQGT--- 60
           +I EIF ++QGEG + G   VF R  GCNL            C +CDT+  +G   T   
Sbjct: 4   NIIEIFSSIQGEGKYVGCRQVFVRLEGCNL-----------DCTYCDTEKEIGRHPTCVV 52

Query: 61  --KGGRY---------NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
               G +         +++ +A L  +  + G        +TGGEPLL   VP I+AL+ 
Sbjct: 53  EMPAGSHELHSYENPLSIETVAALAAQ--VAGGVPHHSLSVTGGEPLLH--VPFIRALSA 108

Query: 110 R-GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
           R    I +ETNGT+         CVS     D+K+ G
Sbjct: 109 RIPLPIFLETNGTLYEALAHCIDCVS-YISMDIKLPG 144


>gi|323488449|ref|ZP_08093696.1| hypothetical protein GPDM_03875 [Planococcus donghaensis MPA1U2]
 gi|323397956|gb|EGA90755.1| hypothetical protein GPDM_03875 [Planococcus donghaensis MPA1U2]
          Length = 235

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 18/135 (13%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    GT  G 
Sbjct: 5   VMEIFGPTVQGEGMVMGQKTMFVRTAGCDY-----------SCSWCDSKFTW-DGT--GT 50

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI- 122
               Q AD+IEE    G     +  ++GG P L   +  L+   +++G+++AVET  +I 
Sbjct: 51  SVSKQPADIIEELIHIGGSNFSHVTISGGNPALHKGIGELVDLCHQQGWKVAVETQASIW 110

Query: 123 -EPPQGIDWICVSPK 136
            E    ID I +SPK
Sbjct: 111 QEWMPTIDDITLSPK 125


>gi|73667685|ref|YP_303700.1| hypothetical protein Mbar_A0135 [Methanosarcina barkeri str.
           Fusaro]
 gi|72394847|gb|AAZ69120.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 258

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 32/130 (24%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I+E+F ++QGEG + G    F RFSGCNL            C +CDTDF     +  G  
Sbjct: 11  IREVFCSVQGEGPYVGARQAFVRFSGCNL-----------NCNYCDTDF-----SNPGTC 54

Query: 66  NVDQL--ADLIE-----------EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF 112
           N +Q+  + + E           E  I    +     LTGGEPL+  D   I+ LN    
Sbjct: 55  NYEQVEGSGIFEKIKNPVSISQLESMIRPFNKLHSVSLTGGEPLMHAD--FIEKLNLTS- 111

Query: 113 EIAVETNGTI 122
            + +E+N T+
Sbjct: 112 PLYLESNMTL 121


>gi|93005554|ref|YP_579991.1| radical SAM family protein [Psychrobacter cryohalolentis K5]
 gi|92393232|gb|ABE74507.1| Radical SAM [Psychrobacter cryohalolentis K5]
          Length = 244

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 21/118 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF +LQGE  ++G   +F R +GC L           +C +CDT++     + G R 
Sbjct: 22  LTEIFYSLQGEALNSGLPTIFVRLTGCPL-----------RCVYCDTEYA---FSGGERQ 67

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           +++ +        I      R C LTGGEPL Q + + L++ L   G+EI++ET G +
Sbjct: 68  SLETIMAT-----IASFPCKRIC-LTGGEPLAQPNAIELMKRLLNEGYEISLETAGAL 119


>gi|310639673|ref|YP_003944431.1| coenzyme pqq synthesis-like protein [Paenibacillus polymyxa SC2]
 gi|309244623|gb|ADO54190.1| Coenzyme PQQ synthesis-like protein [Paenibacillus polymyxa SC2]
          Length = 237

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 16/152 (10%)

Query: 12  TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
           T+QGEG   G   +F R  GC+            +C +CD+ F     +K     +  L 
Sbjct: 13  TIQGEGSVIGLKTMFVRLYGCD-----------YKCSWCDSAFTWDGSSKSSIQRLTSL- 60

Query: 72  DLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP--QG 127
           ++I++    G     Y  ++GG P L  +    LI  L+KR  +I VET G+I       
Sbjct: 61  EIIDKLNSIGLDGCTYVTISGGNPALYNEPLYDLISELHKRSKKIIVETQGSIWKDWFND 120

Query: 128 IDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
           +D + +SPK    L     + L+ +F  +  S
Sbjct: 121 VDILTISPKPPSSLMTTDWKVLRFIFANLQHS 152


>gi|87200860|ref|YP_498117.1| radical SAM family protein [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136541|gb|ABD27283.1| Radical SAM [Novosphingobium aromaticivorans DSM 12444]
          Length = 247

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 30/147 (20%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           E+F +LQGEG   GR +VF R S CNL            CR+CDT +   +     R + 
Sbjct: 13  EVFSSLQGEGPGMGRPSVFVRLSRCNL-----------ACRWCDTAYT-WRFAGDNRPHR 60

Query: 68  DQLA-DLIEEQWITGEKEGRYCVL---------TGGEPLLQ----VDVPLIQALNKRGFE 113
           D++A +    Q +  E++    +L         TGGEPLLQ      +  +    +    
Sbjct: 61  DEVAFEKAGNQLVMSEEDTAALILVHPEDRLVITGGEPLLQGAALARLVALLKAERPALH 120

Query: 114 IAVETNGTIEPPQGIDWIC----VSPK 136
           + +ETNGT+     +D +     VSPK
Sbjct: 121 VEIETNGTVAVHPALDPLVDQFNVSPK 147


>gi|57505796|ref|ZP_00371721.1| radical SAM domain protein protein [Campylobacter upsaliensis
           RM3195]
 gi|57015826|gb|EAL52615.1| radical SAM domain protein protein [Campylobacter upsaliensis
           RM3195]
          Length = 247

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 7/122 (5%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCN---LWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           E FL++QGEG  AG +A+F RF+GCN   L  G ++ +   +   CDT            
Sbjct: 5   ESFLSIQGEGKFAGLLAIFVRFAGCNFNCLGFGVKKQKEGRELVGCDTLRAVFTKEYQNT 64

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----VPLIQALNKRGFEIAVETNG 120
           Y      +L        +      V+TGGEPLL       +  I+ L +  FE+  ETN 
Sbjct: 65  YENLNAKELFLRVLKMAKDLKPIIVITGGEPLLHHKKSEFLKFIKLLLEAKFEVHFETNA 124

Query: 121 TI 122
           +I
Sbjct: 125 SI 126


>gi|189500807|ref|YP_001960277.1| Radical SAM domain-containing protein [Chlorobium phaeobacteroides
           BS1]
 gi|189496248|gb|ACE04796.1| Radical SAM domain protein [Chlorobium phaeobacteroides BS1]
          Length = 223

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 22/117 (18%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGR 64
           I EIF ++QGE   AG    F R SGC+           + CR+CDT +  ++ GT    
Sbjct: 7   INEIFRSIQGESTFAGTPCTFIRLSGCD-----------SACRWCDTRYASVENGTAMTL 55

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
             +++ AD      +          +TGGEPL Q  V  L+Q L  +G  + +ET G
Sbjct: 56  SEIERRADGFRTSLVE---------ITGGEPLQQEPVYALMQQLCDKGHTVLLETGG 103


>gi|85373083|ref|YP_457145.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter
           litoralis HTCC2594]
 gi|84786166|gb|ABC62348.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter
           litoralis HTCC2594]
          Length = 245

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 62/146 (42%), Gaps = 32/146 (21%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-GIQGT------ 60
           EIF ++QGEG  AG    F R S CNL            C +CDT +    +G       
Sbjct: 15  EIFASVQGEGLSAGAPVAFVRLSRCNL-----------ACVWCDTAYTWHFEGDTRPHRS 63

Query: 61  ------KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
                 K  + ++D  AD+ E     G+K     V+TGGEPL+Q               +
Sbjct: 64  GETFERKANQVSLDP-ADVAERIAALGQKR---LVITGGEPLMQGGPLAELLELLPDMTV 119

Query: 115 AVETNGTIEPPQ----GIDWICVSPK 136
            +ETNGT + P      ID   VSPK
Sbjct: 120 EIETNGTTKAPPRLDIRIDQYNVSPK 145


>gi|288931807|ref|YP_003435867.1| radical SAM protein [Ferroglobus placidus DSM 10642]
 gi|288894055|gb|ADC65592.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642]
          Length = 224

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 98/246 (39%), Gaps = 64/246 (26%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            I EIF ++QGEG   G   +F RF GCNL            C +CDT +          
Sbjct: 4   KISEIFYSIQGEGIFCGVRQLFIRFYGCNL-----------NCYYCDTTY----NEDCVN 48

Query: 65  YNVDQL----ADLIEEQWITGEKEGRYCV-LTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           Y  +++     +L   Q I  E E  + V  TGGEPLL  D   I +L K   +  +E+N
Sbjct: 49  YAYNEVRKNPVELDYVQRIIDESERIHSVSFTGGEPLLYAD--FIASLKKTK-KFYLESN 105

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQE--------------------LKLVFPQVNVS 159
            T+  P+    +        DLK++   E                     ++ F ++ + 
Sbjct: 106 MTL--PEKAKKVRFFDVVAGDLKVREAVENYDEVFERTVKCYKILRDTRKRVTFCKIVLP 163

Query: 160 PENYIGFDFER--------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205
           P+    F+FE               F LQP+ G F E    L  +   +    R+  Q H
Sbjct: 164 PK----FNFEEVLNSAMEIKDYVRCFVLQPVFGTFGENILKLQEA-ILEFSDARIIPQVH 218

Query: 206 KFIGIR 211
           K++G+R
Sbjct: 219 KYLGVR 224


>gi|118594347|ref|ZP_01551694.1| Radical SAM [Methylophilales bacterium HTCC2181]
 gi|118440125|gb|EAV46752.1| Radical SAM [Methylophilales bacterium HTCC2181]
          Length = 216

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 25/144 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G   +F R +GC +           +C +CDT +      +G   
Sbjct: 9   INEIFYSLQGESSRIGLPTIFIRLTGCPM-----------RCNYCDTAYA---FHEGKNL 54

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           ++D + + I++       +  +  +TGGEPL Q +   L+  L   G+ +++ET G +  
Sbjct: 55  SIDAIIEEIKQY------DTNFITVTGGEPLAQRNCYSLLDQLCSLGYNVSLETGGAL-- 106

Query: 125 PQGIDWICVSPKAGCDLKIKGGQE 148
              I+ +  + K   D+K  G  E
Sbjct: 107 --SINEVHENVKIILDIKTPGSGE 128


>gi|193213357|ref|YP_001999310.1| radical SAM domain-containing protein [Chlorobaculum parvum NCIB
           8327]
 gi|193086834|gb|ACF12110.1| Radical SAM domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 219

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 21/117 (17%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           SI EIF ++QGE   AG    F R +GC              C +CDT +    GT    
Sbjct: 7   SISEIFHSIQGESSFAGWPCAFVRLAGCG-----------HGCNYCDTTYAEEAGTAMTI 55

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
             V + A   +   +          +TGGEPLLQ +V PL+ AL  +G ++ +ET G
Sbjct: 56  DEVVRRALTFDAPIVE---------VTGGEPLLQPEVYPLLSALCDKGAKVLLETGG 103


>gi|71065297|ref|YP_264024.1| radical activating enzyme [Psychrobacter arcticus 273-4]
 gi|71038282|gb|AAZ18590.1| probable radical activating enzyme [Psychrobacter arcticus 273-4]
          Length = 244

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 21/118 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF +LQGE   +G   +F R +GC L           +C +CDT++     + G R 
Sbjct: 22  LTEIFYSLQGEALTSGLPTIFVRLTGCPL-----------RCVYCDTEYA---FSGGERQ 67

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           +++ +        I      R C LTGGEPL Q + + L++ L   G+EI++ET G +
Sbjct: 68  SLETMMAT-----IASFPCKRIC-LTGGEPLAQPNAIELMKRLLNDGYEISLETAGAL 119


>gi|329940403|ref|ZP_08289684.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptomyces
           griseoaurantiacus M045]
 gi|329300464|gb|EGG44361.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptomyces
           griseoaurantiacus M045]
          Length = 247

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 63/151 (41%), Gaps = 26/151 (17%)

Query: 12  TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-- 69
           T QGEG   G  A+F R S CNL            C  CDT +         R++  +  
Sbjct: 31  TFQGEGPSCGHPALFIRLSRCNL-----------TCTRCDTKYTW----DWSRFDPHEES 75

Query: 70  ----LADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
               +A L+   W T        V+TGGEPL+Q    VPLI+ L   G  I  ETNGTI 
Sbjct: 76  TRQSVAGLV--AWATSSPV-ELVVITGGEPLIQQARLVPLIRGLIAVGKRIEFETNGTIA 132

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
           P   +    V       L   G +E K + P
Sbjct: 133 PTPELAADGVRFNVSPKLASFGVKETKSIVP 163


>gi|302392164|ref|YP_003827984.1| radical SAM domain protein [Acetohalobium arabaticum DSM 5501]
 gi|302204241|gb|ADL12919.1| Radical SAM domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 240

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 28/122 (22%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF ++ GEG  AG +  F R +GCNL           +C +CDT +          Y
Sbjct: 10  VVEIFNSISGEGISAGEIVTFVRVAGCNL-----------RCDYCDTMY---------SY 49

Query: 66  NVDQLADLIEEQWITGEKEG---RYCVLTGGEPLLQVDVP---LIQALNKRGFEIAVETN 119
             D+  +L+  Q I         +  + TGGEP L+ D P   L   L K+GFE+ +ETN
Sbjct: 50  Q-DEEYELLTPQQIVNRINNFGTQQVICTGGEP-LEEDKPKRYLPLYLAKQGFEVRIETN 107

Query: 120 GT 121
           G+
Sbjct: 108 GS 109


>gi|20094254|ref|NP_614101.1| organic-radical-activating enzyme [Methanopyrus kandleri AV19]
 gi|19887288|gb|AAM02031.1| Organic-radical-activating enzyme [Methanopyrus kandleri AV19]
          Length = 252

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 15/128 (11%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTDFVGI 57
           ++ E+FL+LQGEG   G    F RFSGCNL        + R   R +   R      + +
Sbjct: 14  NVYEVFLSLQGEGKFVGEPQAFVRFSGCNLRCAYCDEPASRSSRRRALIRRVSGEVELEL 73

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ---VDVPLIQALNKRGFEI 114
               G    V+ L +L + +   G        LTGGEPL+Q       LI+ L +RGF +
Sbjct: 74  PVPCGPEDVVEVLVELEDLEDTFG-----TVSLTGGEPLVQPWGALKELIERLRERGFRV 128

Query: 115 AVETNGTI 122
            +ETN ++
Sbjct: 129 LLETNASL 136


>gi|261855156|ref|YP_003262439.1| radical SAM protein [Halothiobacillus neapolitanus c2]
 gi|261835625|gb|ACX95392.1| Radical SAM domain protein [Halothiobacillus neapolitanus c2]
          Length = 227

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 22/125 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG   VF R +GC L           +C +CDT +     T G R 
Sbjct: 20  ITEIFRSLQGESESAGWPTVFVRLTGCPL-----------RCVYCDTAYA---FTGGERL 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEP 124
           ++  + D      +        CV TGGEPL Q   +PL+ +L   G  +++ET+G +  
Sbjct: 66  SLLSILD-----QVAAYHTQDVCV-TGGEPLAQPACLPLLTSLCDAGHLVSLETSGALS- 118

Query: 125 PQGID 129
            +G+D
Sbjct: 119 IEGVD 123


>gi|325981315|ref|YP_004293717.1| Radical SAM domain-containing protein [Nitrosomonas sp. AL212]
 gi|325530834|gb|ADZ25555.1| Radical SAM domain protein [Nitrosomonas sp. AL212]
          Length = 219

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 21/122 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF +LQGE    G   VF R +GC L           +C +CDT +     T G   
Sbjct: 12  VNEIFFSLQGETSRVGLPTVFVRLTGCPL-----------RCGYCDTAYA---FTGGENI 57

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEP 124
           ++ ++ + I         +  Y  +TGGEPL Q   + L+ AL    + +++ET+G ++ 
Sbjct: 58  SIAEILNRI------AHYKTNYITVTGGEPLAQKACLVLLTALCDAKYSVSLETSGALDL 111

Query: 125 PQ 126
            Q
Sbjct: 112 SQ 113


>gi|307721837|ref|YP_003892977.1| hypothetical protein Saut_1922 [Sulfurimonas autotrophica DSM
           16294]
 gi|306979930|gb|ADN09965.1| conserved hypothetical protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 252

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 9/124 (7%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNL----WSGREQDRLSAQCRFCDTDF-VGIQGTKG 62
           E F ++QGEG + G  ++F RF GCN+    +  +E     A+   CDT + V  +    
Sbjct: 6   EHFYSIQGEGKYVGTPSLFFRFGGCNMKCEGFGCKETASDGAEVLGCDTVYAVNKEHFLQ 65

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL----QVDVPLIQALNKRGFEIAVET 118
               +++  +L+    +    E    VLTGGEPL+    ++ V  ++ L ++G +I  ET
Sbjct: 66  NWIPINKAQELLSILSLYDLPEAVDIVLTGGEPLIYANDEIFVDFLEVLVEQGHQITFET 125

Query: 119 NGTI 122
           NG++
Sbjct: 126 NGSL 129


>gi|260887262|ref|ZP_05898525.1| radical SAM domain protein [Selenomonas sputigena ATCC 35185]
 gi|330838981|ref|YP_004413561.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185]
 gi|260863324|gb|EEX77824.1| radical SAM domain protein [Selenomonas sputigena ATCC 35185]
 gi|329746745|gb|AEC00102.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185]
          Length = 241

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 29/132 (21%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-----VGIQG 59
           +I EIF ++QGEG + G   VF RF+GCN+           +C FCDT F       ++ 
Sbjct: 4   NILEIFSSIQGEGKYIGARQVFLRFAGCNI-----------KCSFCDTAFQPAASCRVEA 52

Query: 60  TKG-GRYNVDQLADLIEEQWITGEKEG-------RYCVLTGGEPLLQVDVPLIQAL-NKR 110
             G G Y  ++L + +  Q +                 LTGGEPLL      I+AL ++ 
Sbjct: 53  IPGCGEY--EELPNPLSVQEVAARIRAFVVPVRHHSISLTGGEPLLHAT--FIRALASEV 108

Query: 111 GFEIAVETNGTI 122
                +ETNGT+
Sbjct: 109 NVPFFLETNGTL 120


>gi|315452915|ref|YP_004073185.1| Radical SAM domain protein [Helicobacter felis ATCC 49179]
 gi|315131967|emb|CBY82595.1| Radical SAM domain protein [Helicobacter felis ATCC 49179]
          Length = 242

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 62/140 (44%), Gaps = 13/140 (9%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           E F +LQGEG   G+ A+F R  GCN      G + D    +   CD+ +      K   
Sbjct: 7   ESFYSLQGEGSCVGQPAIFIRLGGCNFKCTGFGVQSDIEGKKVLGCDSAYAIYPNAKWQY 66

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNG 120
            N  Q  +L+++            VLTGGEP L    P     ++ L KRG  I VE+NG
Sbjct: 67  LNSTQ--ELLDKLPPFNSNRPPLIVLTGGEPSLHFKNPILLEALEILLKRGHGIWVESNG 124

Query: 121 TI----EPPQGIDWICVSPK 136
           ++     PP       +SPK
Sbjct: 125 SVFFDFNPPLDSLHFTLSPK 144


>gi|29566198|ref|NP_817766.1| gp5 [Mycobacterium phage Rosebush]
 gi|109521763|ref|YP_655685.1| gp5 [Mycobacterium phage Qyrzula]
 gi|29424923|gb|AAN01847.1| gp5 [Mycobacterium phage Rosebush]
 gi|91980707|gb|ABE67425.1| gp5 [Mycobacterium phage Qyrzula]
          Length = 237

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 68/159 (42%), Gaps = 29/159 (18%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + E+F  TLQGEG +AG    F R  GCNL            C +CDT +     T   R
Sbjct: 10  VSELFGPTLQGEGPYAGVTVQFLRLMGCNL-----------SCSWCDTPY-----TWDAR 53

Query: 65  YNVDQLADLIEEQW---ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVE 117
            + D  A+     W   +         V++GGEPLL       QA+     ++G E+ +E
Sbjct: 54  EH-DLNAETTLLAWPDIVDALLPDTPLVISGGEPLLHQKHSAFQAVLQHAWRKGCEVHIE 112

Query: 118 TNGTIEP----PQGIDWICVSPKAGCDLKIKGGQELKLV 152
           TNGT+ P      G     VSPK       +G Q+  + 
Sbjct: 113 TNGTLAPLAATVSGTTVFAVSPKLSHAGPHRGRQDAAIA 151


>gi|328885752|emb|CCA58991.1| Queuosine Biosynthesis QueE Radical SAM [Streptomyces venezuelae
           ATCC 10712]
          Length = 238

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 61/136 (44%), Gaps = 28/136 (20%)

Query: 12  TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT----DFVGIQGTKGGRY-N 66
           T+QGEG   G  A F R + CNL            C  CDT    D       K   Y N
Sbjct: 20  TVQGEGPSTGVPACFIRLALCNLI-----------CSPCDTPYTWDTTRFDLRKEAHYEN 68

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
           V++L       W   + E    V+TGGEPL+Q+     L++ L   G  + +ETNGTI P
Sbjct: 69  VEELL-----AWALDQPED-LVVVTGGEPLIQMAGLTELVKGLRAAGRTVEIETNGTIAP 122

Query: 125 PQGI----DWICVSPK 136
            + +     +  VSPK
Sbjct: 123 SEALVAAGPYFNVSPK 138


>gi|254412243|ref|ZP_05026018.1| radical SAM domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196181209|gb|EDX76198.1| radical SAM domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 269

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 36/158 (22%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-------DFVGIQGT 60
           E+F  +QGEG + G   +F R + C+L           +C FCD+       +   ++ T
Sbjct: 22  ELFSAIQGEGRNVGTRQLFIRLALCDL-----------RCHFCDSQNTWAVPNLASVEQT 70

Query: 61  KGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-----VPLIQAL 107
            G R          VDQL   +E Q   G  E     +TGGEPLLQ       +P++Q  
Sbjct: 71  PGHRDFETHPNPVTVDQLLAWVERQNYPGLHES--ISITGGEPLLQAPFLREFLPVVQ-- 126

Query: 108 NKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
           ++ G  I +ET G   P Q    +      G D+K+  
Sbjct: 127 HRTGLPIYLETGGH-RPEQLAQILPYLNSIGMDMKLPS 163


>gi|296109842|ref|YP_003616791.1| Radical SAM domain protein [Methanocaldococcus infernus ME]
 gi|295434656|gb|ADG13827.1| Radical SAM domain protein [Methanocaldococcus infernus ME]
          Length = 234

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 26/149 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD-----TDFVGIQGT 60
           I EIF ++ GEG + GR  +F RF  CNL            C +CD      + V ++  
Sbjct: 2   ITEIFSSIMGEGKYIGRRYIFIRFPKCNL-----------NCIYCDERKNYKNRVEVEPG 50

Query: 61  KG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAV 116
            G      +  + D+++E       +      TGGEPLL  ++D  L + L K+GF   +
Sbjct: 51  SGVFEEREIRDVKDIVKEVERLKTDDLFAISFTGGEPLLFDKLD-ELNKLLKKKGFRTHL 109

Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
           E+NGT+  P+ + +  +      D+K+KG
Sbjct: 110 ESNGTL--PERLVFTDI---GSIDIKLKG 133


>gi|220935394|ref|YP_002514293.1| putative radical activating enzyme [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996704|gb|ACL73306.1| putative radical activating enzyme [Thioalkalivibrio sp. HL-EbGR7]
          Length = 227

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIFL+LQGE    G   VF R +GC L           +C +CDT++     T G   
Sbjct: 20  ITEIFLSLQGESRSVGWPTVFVRLTGCPL-----------RCGYCDTEYA---FTGGEWM 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123
           +++ +   +    +       +  +TGGEPL Q   + L+  L   G+E+++ET+G ++
Sbjct: 66  SLEAVLAQVASHGV------HHVTVTGGEPLAQRACLELLTRLCDAGYEVSLETSGALD 118


>gi|119896705|ref|YP_931918.1| putative radical activating enzyme [Azoarcus sp. BH72]
 gi|119669118|emb|CAL93031.1| conserved hypothetical radical activating enzyme [Azoarcus sp.
           BH72]
          Length = 220

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF ++QGE    G    F R +GC L           +C +CDT +    G      
Sbjct: 13  LTEIFASIQGESTRVGLPTTFVRLTGCPL-----------RCSWCDTAYAFTGG------ 55

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEP 124
               L+D++++    G    R+  +TGGEPL Q   + L+ AL   G+ +++ET+G    
Sbjct: 56  EARALSDVLDDVAALGL---RHVCVTGGEPLAQKYCLALLTALCDAGYSVSLETSG---- 108

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
              +D   V P+     DLK  G  E+
Sbjct: 109 --ALDIGGVDPRVSRVMDLKAPGSAEV 133


>gi|196247860|ref|ZP_03146562.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. G11MC16]
 gi|196212644|gb|EDY07401.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. G11MC16]
          Length = 244

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 20/137 (14%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G+  +F R +GC+            +CR+CD+ F         +
Sbjct: 7   VLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSAFT---WDGSAK 52

Query: 65  YNVDQLA--DLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
             ++QL   D+ +     G +  R+  ++GG PLL   +  L+  L+++G ++AVET G+
Sbjct: 53  EEIEQLTAEDIWQRLEAIGGRRFRHVTISGGNPLLLAALGELVALLHEKGVQVAVETQGS 112

Query: 122 I--EPPQGIDWICVSPK 136
              +    +D + +SPK
Sbjct: 113 RWQDWLLDVDDVTISPK 129


>gi|302342762|ref|YP_003807291.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075]
 gi|301639375|gb|ADK84697.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075]
          Length = 212

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 21/122 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + EIF ++QGEG  AG    F R +GC L           +C +CDT +    G   
Sbjct: 1   MLEVCEIFQSIQGEGVDAGLPCAFVRLAGCPL-----------RCAWCDTAYAWQGGAAM 49

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
               V   A   E + +          LTGGEPL Q + P L+ AL   G  + VET+G 
Sbjct: 50  SLPEVLARALAFELELVE---------LTGGEPLAQAETPALLGALCDAGRRVLVETSGA 100

Query: 122 IE 123
           ++
Sbjct: 101 LD 102


>gi|222055915|ref|YP_002538277.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221565204|gb|ACM21176.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 249

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 29/132 (21%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-----FVGIQGTKG 62
           E+F ++QGEG   G   VF RFSGCNL            C +CDT+     +  ++ T G
Sbjct: 10  EVFSSIQGEGLLVGLRQVFIRFSGCNL-----------TCSYCDTEPDRTQYCQLESTPG 58

Query: 63  GR--------YNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLL--QVDVPLIQALNKRG 111
            R          VD+L +L+   W  G     + + +TGGEPLL  Q+   L+ AL +  
Sbjct: 59  RRDFFQVENPVPVDRLVNLV-SGWQRGWPGIHHSISITGGEPLLCHQLLQELLPAL-RHY 116

Query: 112 FEIAVETNGTIE 123
             I +ETNG + 
Sbjct: 117 LPIYLETNGILH 128


>gi|325958051|ref|YP_004289517.1| Radical SAM domain-containing protein [Methanobacterium sp. AL-21]
 gi|325329483|gb|ADZ08545.1| Radical SAM domain protein [Methanobacterium sp. AL-21]
          Length = 233

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 16/118 (13%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +I E+F + QGEG   GR  +F RFSGCNL            C +CDT         G  
Sbjct: 4   NINEVFSSFQGEGTLIGRRQIFVRFSGCNL-----------DCSYCDTP-ESRNPQYGEL 51

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
            + D+L   +    IT +        TGGEPLL  +  + + L +  F+  +ETNGT+
Sbjct: 52  ISTDELYSKV-NSIITPDFHS--ISFTGGEPLLHSNF-IKKFLEEYEFKSMLETNGTL 105


>gi|206603340|gb|EDZ39820.1| Putative radical activating enzyme [Leptospirillum sp. Group II
           '5-way CG']
          Length = 212

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 21/128 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E F ++QGE  ++G    F R +GC L           +CR+CDT +    G +    
Sbjct: 3   ITETFRSIQGESRYSGWPCFFIRTTGCPL-----------RCRWCDTTYSFYGGEE---R 48

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124
            VD    L+ E   +G        +TGGEP +Q ++P L Q L  RG  + +ET+G    
Sbjct: 49  TVDS---LVGEAVSSGTS---LVEITGGEPFVQPELPALCQKLLDRGKTVLIETSGGFSV 102

Query: 125 PQGIDWIC 132
           P G++  C
Sbjct: 103 PSGLNRQC 110


>gi|304315357|ref|YP_003850504.1| glycyl radical-activating enzyme [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588816|gb|ADL59191.1| predicted glycyl radical-activating enzyme [Methanothermobacter
           marburgensis str. Marburg]
          Length = 244

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 16/117 (13%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F ++QGEG   G+  +F RF+GCNL            C +CDT       + G   
Sbjct: 5   IMEVFSSIQGEGLLVGKRQIFIRFAGCNL-----------NCSYCDTP-ESRDPSCGEEL 52

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           + DQL  ++ E  +T +       +TGGEPLL  D  + + L    +   +ETNG++
Sbjct: 53  SADQLLGMV-ENLVTPDFHS--LSITGGEPLLYPDF-IREFLEDSPWSALLETNGSL 105


>gi|119357772|ref|YP_912416.1| radical SAM domain-containing protein [Chlorobium phaeobacteroides
           DSM 266]
 gi|119355121|gb|ABL65992.1| Radical SAM domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 223

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 55/121 (45%), Gaps = 21/121 (17%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +K  SI EIF ++QGE   AG    F R +GC              C FCDT +    G 
Sbjct: 3   LKELSISEIFHSIQGESSFAGWPCAFVRLAGCG-----------NGCNFCDTTYAETDGF 51

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
                 + ++ D+I +   T         +TGGEPLLQ  V PL+Q L   G  + +ET 
Sbjct: 52  ------MLEIPDIIMQ---TQAFRAPIIEITGGEPLLQPAVYPLMQQLCNLGETVLLETG 102

Query: 120 G 120
           G
Sbjct: 103 G 103


>gi|77919241|ref|YP_357056.1| organic radical activating protein [Pelobacter carbinolicus DSM
           2380]
 gi|77545324|gb|ABA88886.1| organic radical activating enzyme [Pelobacter carbinolicus DSM
           2380]
          Length = 253

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 33/132 (25%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-----IQGTKG 62
           EIF ++QGEGG  G   VF R +GCNL            C +CDTDF       I+   G
Sbjct: 15  EIFSSIQGEGGLVGCRQVFIRLAGCNL-----------DCAYCDTDFAPQDTCRIEDAPG 63

Query: 63  -GRYN-------VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-----VPLIQALNK 109
            G++        ++ +AD++               LTGGEPLLQ       VP++    K
Sbjct: 64  SGQFRSVTNPVALEVVADILGAWTKRAPGMHHSISLTGGEPLLQGQLLRDWVPVL----K 119

Query: 110 RGFEIAVETNGT 121
               I +ETNGT
Sbjct: 120 EILPIHLETNGT 131


>gi|304408385|ref|ZP_07390032.1| Radical SAM domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304342674|gb|EFM08521.1| Radical SAM domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 240

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 21/119 (17%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           EIF T++GEG  AG   VF R  GCNL           +C +CDT +           ++
Sbjct: 24  EIFETVEGEGTRAGFPTVFVRLFGCNL-----------RCVWCDTTYSYPPAKSEYSLSI 72

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRG--FEIAVETNGTI 122
            ++ + ++          R+   TGGEPLL  D    L++AL +     ++ VETNG I
Sbjct: 73  REIVEKVKSY------RSRHICFTGGEPLLYGDRSAMLLKALAEIDGIVDVHVETNGAI 125


>gi|90022171|ref|YP_527998.1| putative radical activating enzyme [Saccharophagus degradans 2-40]
 gi|89951771|gb|ABD81786.1| Radical SAM [Saccharophagus degradans 2-40]
          Length = 216

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G   VF R +GC L           +C +CD+++    G  G R 
Sbjct: 8   ITEIFHSLQGEARTVGLPTVFVRLTGCPL-----------RCHYCDSEY-AFHG--GERL 53

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           + +Q   ++E+    G K   Y  +TGGEPL Q   + L+  L   G+ +++ET+G ++
Sbjct: 54  SFEQ---ILEQVAGFGAK---YVCVTGGEPLAQPGCIDLLSRLCDLGYNVSLETSGAMD 106


>gi|113474000|ref|YP_720061.1| hypothetical protein Tery_0080 [Trichodesmium erythraeum IMS101]
 gi|110165048|gb|ABG49588.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
          Length = 207

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 87/216 (40%), Gaps = 40/216 (18%)

Query: 12  TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
           T+QGEG  AG    F R +GC              C +CDT +    G       +  L 
Sbjct: 16  TIQGEGYWAGTPVDFIRLAGC-----------PVGCHYCDTGYA--DGGISLPRQIQTLD 62

Query: 72  DLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG----TIEPPQ 126
            LI E +          V++GGEP +   +P LI  +   G ++++ET+G     I P  
Sbjct: 63  KLINELF------SPRVVISGGEPFIHKQLPALINRIEATGRQVSIETSGCYWQNISPNA 116

Query: 127 GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS----LQPMDGPFLE 182
              W+ +SPK     K      +     ++ +  E   G + E +S    L+     FL+
Sbjct: 117 ---WVTLSPKEHISHKYPIVPSMWTRASEIKLVIET--GKELEFYSKILLLKNQTPVFLQ 171

Query: 183 E-------NTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                      L      + P  RLS+Q HK++GI+
Sbjct: 172 PEWYNRDFTLPLVQKLLQEYPHCRLSIQLHKYLGIK 207


>gi|158335495|ref|YP_001516667.1| radical SAM domain-containing protein [Acaryochloris marina
           MBIC11017]
 gi|158305736|gb|ABW27353.1| radical SAM domain protein [Acaryochloris marina MBIC11017]
          Length = 256

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 38/162 (23%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-------GI 57
           ++ EIF  +QGEG + G   +F RF GC+L           +C FCD+           I
Sbjct: 8   NLVEIFSAIQGEGLNVGTRQIFIRFGGCDL-----------RCHFCDSAHTWTPKSSCQI 56

Query: 58  QGTKG----GRY----NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-----VPLI 104
           + T G     RY     + Q+ + +++Q + G  +     LTGGEPLLQV      +PL+
Sbjct: 57  EKTPGCRDFARYPNPVTLPQILEWVQDQDLPGMHDS--ISLTGGEPLLQVAFLQNLLPLL 114

Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWICVS-PKAGCDLKIKG 145
           +   +    I +ET G    P+ +D +       G DLK+  
Sbjct: 115 R--QQTSLPIYLETGG--HHPEALDPLLPHLDSVGMDLKLPS 152


>gi|228477559|ref|ZP_04062192.1| pyruvate-formate lyase-activating enzyme [Streptococcus salivarius
           SK126]
 gi|228250703|gb|EEK09901.1| pyruvate-formate lyase-activating enzyme [Streptococcus salivarius
           SK126]
          Length = 247

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K  R
Sbjct: 20  VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 68

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122
              D++ + ++     G  +  Y  L+GG P LL  ++  L+  L  RG  +AVET G+ 
Sbjct: 69  MTADEVIEALD---ALGTYD--YVTLSGGNPALLAANMAELVSKLKARGVTLAVETQGSR 123

Query: 123 --EPPQGIDWICVSPK 136
             E  + ID + +SPK
Sbjct: 124 WQEWLKDIDQVTLSPK 139


>gi|56419512|ref|YP_146830.1| coenzyme PQQ synthesis [Geobacillus kaustophilus HTA426]
 gi|56379354|dbj|BAD75262.1| coenzyme PQQ synthesis [Geobacillus kaustophilus HTA426]
          Length = 244

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 24/139 (17%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G+  +F R +GC+            +CR+CD+ F      K   
Sbjct: 7   VLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSAFTWDGSAKD-- 53

Query: 65  YNVDQLADLIEEQW----ITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
             ++QL    +E W      G +  R+  ++GG PLL   +  LI  L+++G  +AVET 
Sbjct: 54  -EIEQLT--ADEIWRRLEAIGGRRFRHVTISGGNPLLIAALGELIALLHEKGMRVAVETQ 110

Query: 120 GTI--EPPQGIDWICVSPK 136
           G+   +    ID + +SPK
Sbjct: 111 GSRWQDWLLDIDDVTLSPK 129


>gi|322516971|ref|ZP_08069861.1| ExsD protein [Streptococcus vestibularis ATCC 49124]
 gi|322124454|gb|EFX95949.1| ExsD protein [Streptococcus vestibularis ATCC 49124]
          Length = 238

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K  R
Sbjct: 11  VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122
              D++ + ++     G  +  Y  L+GG P LL  ++  L+  L  RG  +AVET G+ 
Sbjct: 60  MTADEVIEALD---ALGTYD--YVTLSGGNPALLAANMAQLVSKLKARGVTLAVETQGSR 114

Query: 123 --EPPQGIDWICVSPK 136
             E  + ID + +SPK
Sbjct: 115 WQEWLKDIDQVTLSPK 130


>gi|312863321|ref|ZP_07723559.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Streptococcus vestibularis F0396]
 gi|311100857|gb|EFQ59062.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Streptococcus vestibularis F0396]
          Length = 238

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K  R
Sbjct: 11  VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122
              D++ + ++     G  +  Y  L+GG P LL  ++  L+  L  RG  +AVET G+ 
Sbjct: 60  MTADEVIEALD---ALGTYD--YVTLSGGNPALLAANMAQLVSKLKARGVTLAVETQGSR 114

Query: 123 --EPPQGIDWICVSPK 136
             E  + ID + +SPK
Sbjct: 115 WQEWLKDIDQVTLSPK 130


>gi|261419199|ref|YP_003252881.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. Y412MC61]
 gi|319766015|ref|YP_004131516.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. Y412MC52]
 gi|261375656|gb|ACX78399.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. Y412MC61]
 gi|317110881|gb|ADU93373.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. Y412MC52]
          Length = 244

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 24/139 (17%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G+  +F R +GC+            +CR+CD+ F      K   
Sbjct: 7   VLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSAFTWDGSAKD-- 53

Query: 65  YNVDQLADLIEEQW----ITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
             ++QL    +E W      G +  R+  ++GG PLL   +  LI  L+++G  +AVET 
Sbjct: 54  -EIEQLT--ADEIWRRLEAIGGRRFRHVTISGGNPLLIAALGELIALLHEKGMRVAVETQ 110

Query: 120 GTI--EPPQGIDWICVSPK 136
           G+   +    ID + +SPK
Sbjct: 111 GSRWQDWLLDIDDVTLSPK 129


>gi|297530832|ref|YP_003672107.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. C56-T3]
 gi|297254084|gb|ADI27530.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. C56-T3]
          Length = 244

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 24/139 (17%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G+  +F R +GC+            +CR+CD+ F      K   
Sbjct: 7   VLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSAFTWDGSAKD-- 53

Query: 65  YNVDQLADLIEEQW----ITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
             ++QL    +E W      G +  R+  ++GG PLL   +  LI  L+++G  +AVET 
Sbjct: 54  -EIEQLT--ADEIWRRLEAIGGRRFRHVTISGGNPLLIAALGELIALLHEKGMRVAVETQ 110

Query: 120 GTI--EPPQGIDWICVSPK 136
           G+   +    ID + +SPK
Sbjct: 111 GSRWQDWLLDIDDVTLSPK 129


>gi|15614805|ref|NP_243108.1| hypothetical protein BH2242 [Bacillus halodurans C-125]
 gi|10174861|dbj|BAB05961.1| BH2242 [Bacillus halodurans C-125]
          Length = 236

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 18/140 (12%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           MK   + EIF  T+QGEG   G+  +F R  GC+             C +CD+ F     
Sbjct: 1   MKRIPVMEIFGPTVQGEGMVIGQKTMFVRTGGCDY-----------SCSWCDSAFTWDGS 49

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118
            K      D++   +EE  I GE+   +  ++GG P L   +  L+  L+ +G  +A+ET
Sbjct: 50  LKATLRTADEIIAKLEE--IGGERFS-HVSISGGNPALHKGIGELVDKLHDKGIRVALET 106

Query: 119 NGTIEPPQ--GIDWICVSPK 136
            G++       ID + +SPK
Sbjct: 107 QGSLWQDWFLKIDDLTISPK 126


>gi|288905497|ref|YP_003430719.1| radical SAM domain protein [Streptococcus gallolyticus UCN34]
 gi|288732223|emb|CBI13788.1| putative radical SAM domain protein [Streptococcus gallolyticus
           UCN34]
          Length = 237

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T QGEG   G+  +F R  GC+             C +CD+ F      K  R
Sbjct: 10  ILEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEKPKR 58

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
             VD++ + +++    G  +  Y  L+GG P L  +    L+  L  RG  +A+ET G+ 
Sbjct: 59  MTVDEVIEQLDQ---LGTYD--YVTLSGGNPCLLANNMAELVAKLKARGVTLAIETQGSR 113

Query: 123 EPP--QGIDWICVSPK 136
                + ID + +SPK
Sbjct: 114 WQTWLKDIDQVTLSPK 129


>gi|254448671|ref|ZP_05062129.1| radical activating enzyme [gamma proteobacterium HTCC5015]
 gi|198261679|gb|EDY85966.1| radical activating enzyme [gamma proteobacterium HTCC5015]
          Length = 235

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE   AG    F R +GC L           +C +CD+++       G  +
Sbjct: 28  ITEIFCSLQGESTLAGLPTTFVRLTGCPL-----------RCTYCDSEYAFF---GGDWW 73

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
           + + L D ++            CV TGGEPL Q     L+ AL  RG+ +++ET+G ++
Sbjct: 74  SQEALLDRVDTLGAPN-----VCV-TGGEPLAQRSCHELMSALCDRGYRVSLETSGALD 126


>gi|306831581|ref|ZP_07464739.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426366|gb|EFM29480.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 237

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T QGEG   G+  +F R  GC+             C +CD+ F      K  R
Sbjct: 10  ILEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEKPKR 58

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
             VD++ + +++    G  +  Y  L+GG P L  +    L+  L  RG  +A+ET G+ 
Sbjct: 59  MTVDEVIEQLDQ---LGTYD--YVTLSGGNPCLLANNMAELVAKLKARGVTLAIETQGSR 113

Query: 123 EPP--QGIDWICVSPK 136
                + ID + +SPK
Sbjct: 114 WQTWLKDIDQVTLSPK 129


>gi|297621468|ref|YP_003709605.1| Radical activating enzyme [Waddlia chondrophila WSU 86-1044]
 gi|297376769|gb|ADI38599.1| Radical activating enzyme [Waddlia chondrophila WSU 86-1044]
          Length = 228

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 27/138 (19%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           EIFL++QGE    G    F R + CNL           +C +CDT +        G+   
Sbjct: 21  EIFLSIQGETSLTGLPTTFIRLASCNL-----------RCTWCDTPY------SFGKGES 63

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQ 126
             L  +IE     G     +  +TGGEPLLQ  V L+ + L    + +++ET G++   +
Sbjct: 64  SSLQSIIETVRSNG---ASHVCITGGEPLLQSQVYLLMETLCNLDYIVSLETGGSLSTEK 120

Query: 127 GIDWICVSPKAGCDLKIK 144
                 V P+    L IK
Sbjct: 121 ------VDPRVITILDIK 132


>gi|323701737|ref|ZP_08113408.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
 gi|323533273|gb|EGB23141.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
          Length = 247

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 80/185 (43%), Gaps = 34/185 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD------F 54
           M +  ++EIF ++QGEG + G   VF RF+GCN W           C +CDT        
Sbjct: 1   MPVAYLQEIFSSVQGEGPYVGCRQVFIRFAGCN-WC----------CAYCDTPTEPQPAT 49

Query: 55  VGIQGTKGGRYNVD--------QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLI 104
             ++ + G R  V+        Q+A++I + +           LTGGEPLL  +    LI
Sbjct: 50  CVVEKSPGYRDFVNLANPMTPGQVAEIIRQYYNLSWHHS--VSLTGGEPLLHTEYIKDLI 107

Query: 105 QALNKRGFEIAVETNGTI-----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
           + L      I +ETNGT+     E   GID I +  K           +L   F +V   
Sbjct: 108 KHLPSTRRGIFLETNGTLPDRLTEVITGIDIISMDVKLSSATGTPTPWDLHRHFIKVARQ 167

Query: 160 PENYI 164
            E Y+
Sbjct: 168 RELYV 172


>gi|282850491|ref|ZP_06259870.1| radical SAM domain protein [Veillonella parvula ATCC 17745]
 gi|282579984|gb|EFB85388.1| radical SAM domain protein [Veillonella parvula ATCC 17745]
          Length = 251

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 19/108 (17%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           ++ EIF ++ GEG   G +  F R   CN+           +C +CDT +     +    
Sbjct: 2   NVIEIFASIDGEGSRQGLLTTFLRLHDCNI-----------RCSYCDTTYSYGIDSVFTE 50

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKR 110
             V ++AD+IE              +TGGEPLLQ    V LI  LN+R
Sbjct: 51  MTVAEVADVIESLG------NHRITITGGEPLLQEAAVVELIDELNRR 92


>gi|169831395|ref|YP_001717377.1| radical SAM domain-containing protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638239|gb|ACA59745.1| Radical SAM domain protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 246

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 33/134 (24%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-----IQGT 60
           + E+F ++QGEG + G   +F RF+GCNL           QC +CDT         ++ T
Sbjct: 7   VTEVFTSVQGEGPYLGCRHMFVRFAGCNL-----------QCAYCDTPAPAGRRCRVENT 55

Query: 61  KGGR--------YNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDV--PLIQALN 108
            G R          V  L D     W +      +    LTGGEPLL  D     +    
Sbjct: 56  PGRRVFTWYPNPVTVQMLLD-----WTSRAVAPHFHALALTGGEPLLHADFLESFLVGFR 110

Query: 109 KRGFEIAVETNGTI 122
           + G    +ETNGT+
Sbjct: 111 EYGGRCYLETNGTL 124


>gi|118580205|ref|YP_901455.1| radical SAM domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118502915|gb|ABK99397.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379]
          Length = 249

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 27/132 (20%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-----VGIQGT 60
           I EIF ++QGEG  AGR  +F R + CNL           +C +CDT F       ++ +
Sbjct: 7   IAEIFSSIQGEGYLAGRRQIFIRLTRCNL-----------ECSYCDTGFGEGESCLVENS 55

Query: 61  KGGR--------YNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVDVPLIQALNKRG 111
            G            +D+L D++   W        + + LTGGEPLL   +        RG
Sbjct: 56  PGSNVFEHFPRAVGLDRLMDIL-NAWTWALPRAHHSISLTGGEPLLFAPLLSDWLPRLRG 114

Query: 112 -FEIAVETNGTI 122
              + +ETNGT+
Sbjct: 115 ILPVHLETNGTL 126


>gi|239906320|ref|YP_002953061.1| hypothetical protein DMR_16840 [Desulfovibrio magneticus RS-1]
 gi|239796186|dbj|BAH75175.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 210

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 53/122 (43%), Gaps = 21/122 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + EIF ++QGE  +AG    F R SGCNL            CR+CDT         G
Sbjct: 1   MLKVHEIFASIQGESSYAGWPCGFLRLSGCNL-----------ACRWCDTLHA------G 43

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
             Y    +AD        G        +TGGEPLL    P L++ L      + VETNG+
Sbjct: 44  DSYAEMTVADATAALAGLGLP---LVEVTGGEPLLAPQTPELVKRLCDLDLTVLVETNGS 100

Query: 122 IE 123
            +
Sbjct: 101 FD 102


>gi|322373082|ref|ZP_08047618.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Streptococcus sp. C150]
 gi|321278124|gb|EFX55193.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Streptococcus sp. C150]
          Length = 238

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K  R
Sbjct: 11  VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122
              D++   ++     G  +  Y  L+GG P LL  ++  L+  L  RG  +AVET G+ 
Sbjct: 60  MTADEVIAALD---ALGTYD--YVTLSGGNPALLAANMAELVSKLKARGVTLAVETQGSR 114

Query: 123 --EPPQGIDWICVSPK 136
             E  + ID I +SPK
Sbjct: 115 WQEWLRDIDQITLSPK 130


>gi|149187035|ref|ZP_01865342.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter sp.
           SD-21]
 gi|148829324|gb|EDL47768.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter sp.
           SD-21]
          Length = 244

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 65/148 (43%), Gaps = 36/148 (24%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT----DFVGIQGTKGG 63
           EIF ++QGEG   GR   F R S CNL            C +CDT     F G       
Sbjct: 14  EIFASVQGEGPSVGRPVAFMRLSRCNL-----------ACVWCDTAYTWHFEGDNRPHRD 62

Query: 64  RYNVDQLAD---LIEEQ---WITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-----RGF 112
               ++ A+   L EE+    IT   + R  V+TGGEPLLQ      QAL K        
Sbjct: 63  GVTFERKANQVTLDEEEVAARITQLGQDR-LVITGGEPLLQA-----QALAKLLDLLPDI 116

Query: 113 EIAVETNGTIEPPQ----GIDWICVSPK 136
            + +ETNGT + P      ID   VSPK
Sbjct: 117 SVEIETNGTTKAPPRLDIRIDQFNVSPK 144


>gi|83942510|ref|ZP_00954971.1| radical SAM domain protein [Sulfitobacter sp. EE-36]
 gi|83846603|gb|EAP84479.1| radical SAM domain protein [Sulfitobacter sp. EE-36]
          Length = 236

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 15/139 (10%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    I E+F  T+QGEG   G   VF R  GC+            +C +CD+       
Sbjct: 1   MSQLRIAEVFGPTIQGEGALIGEPTVFVRTGGCDY-----------RCAWCDSMHAVDPA 49

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
            +    N+   A   E Q ++ +       L+GG P +Q   PLIQ  +  G+  A ET 
Sbjct: 50  FRHDWANMSTDAVWQEVQRLS-DNTPLTVSLSGGNPAIQDFAPLIQLGHAAGYRFACETQ 108

Query: 120 GTIEPPQ--GIDWICVSPK 136
           G+I  P    +D + +SPK
Sbjct: 109 GSIAKPWFGQLDCLVLSPK 127


>gi|238018973|ref|ZP_04599399.1| hypothetical protein VEIDISOL_00833 [Veillonella dispar ATCC 17748]
 gi|237864457|gb|EEP65747.1| hypothetical protein VEIDISOL_00833 [Veillonella dispar ATCC 17748]
          Length = 247

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 21/109 (19%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-VGIQGTKGG 63
           ++ EIF ++ GEG   G +  F R   CN+           +C +CDT +  GI  T   
Sbjct: 2   NVIEIFASIDGEGSRQGLLTTFLRLHDCNI-----------RCSYCDTTYSYGIDSTFTD 50

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKR 110
              V ++AD IE              +TGGEPLLQ    V LI  LN+R
Sbjct: 51  -MTVREVADAIESLG------NHRITITGGEPLLQEAAVVELIDELNRR 92


>gi|320353477|ref|YP_004194816.1| Radical SAM domain-containing protein [Desulfobulbus propionicus
           DSM 2032]
 gi|320121979|gb|ADW17525.1| Radical SAM domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 223

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 20/116 (17%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           E F ++QGE   AG   +F R +GCNL           +C +CD  +   +   G    V
Sbjct: 10  ERFYSIQGESTRAGLPCLFVRLAGCNL-----------RCSYCDARYTWEE--TGETMTV 56

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           D++    E+        G    +TGGEPL Q  V PL++ L   G  + +ETNG++
Sbjct: 57  DEILAWAEQY------PGVMVEVTGGEPLRQNGVYPLMRNLLAAGLTVLLETNGSL 106


>gi|299135832|ref|ZP_07029016.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298601956|gb|EFI58110.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 227

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 21/115 (18%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           E++ ++QGE   AG   +F R +GCNL           +C +CD+++     T G  +  
Sbjct: 5   ELYKSVQGESSFAGVPCIFVRLAGCNL-----------RCAWCDSEYT---FTGGKPFTT 50

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           D++   IE       +       TGGEP+LQ    +PL+Q L    + + +ET+G
Sbjct: 51  DEIVAQIE-----ALQPCPLIEFTGGEPMLQQKELLPLMQRLLDANYTLMMETSG 100


>gi|261405277|ref|YP_003241518.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Paenibacillus sp. Y412MC10]
 gi|261281740|gb|ACX63711.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Paenibacillus sp. Y412MC10]
          Length = 243

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 16/135 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G+    
Sbjct: 7   VMEIFGPTVQGEGMVVGRKTMFVRTAGCDY-----------RCSWCDSAFT-WDGSAKDS 54

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI- 122
            ++    ++ +E +  G +   +  L+GG P L   +  L+  L++ G  +AVET G+  
Sbjct: 55  ISLLSADEIWQELYRLGGERFDHVTLSGGNPALLPQLGALVDELHRHGITVAVETQGSRW 114

Query: 123 -EPPQGIDWICVSPK 136
            +    ID + +SPK
Sbjct: 115 QDWLNHIDEVTISPK 129


>gi|52842258|ref|YP_096057.1| radical activating enzyme [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629369|gb|AAU28110.1| radical activating enzyme [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 217

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 21/117 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGE    G   VF R +GC L           +C++CDT +       GG  
Sbjct: 10  ITEIFHSLQGESVTVGLPTVFVRLTGCPL-----------RCQYCDTAY----AFSGGE- 53

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
            V ++ D++ +       + ++  +TGGEPL Q   + L+  L   G+ +++ET+G 
Sbjct: 54  -VVEIDDILNK---VASYQCQHVCVTGGEPLAQPGCILLLSKLCDAGYSVSLETSGA 106


>gi|126642575|ref|YP_001085559.1| putative organic radical activating enzyme [Acinetobacter baumannii
           ATCC 17978]
 gi|126388459|gb|ABO12957.1| putative organic radical activating enzyme [Acinetobacter baumannii
           ATCC 17978]
          Length = 124

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 23/113 (20%)

Query: 13  LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
           +QGE   +G   VF R +GC L           +C +CDT +   +G  G R +++ + +
Sbjct: 1   MQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTY-SFEG--GERLSLEHIIE 46

Query: 73  LIEEQWITGEK-EGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
                  T EK +  Y  +TGGEPL Q + + L+Q L   GF++++ET+G ++
Sbjct: 47  -------TAEKYQTPYICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSGALD 92


>gi|322378511|ref|ZP_08052961.1| hypothetical protein HSUHS1_0174 [Helicobacter suis HS1]
 gi|322380522|ref|ZP_08054704.1| organic radical activating enzyme [Helicobacter suis HS5]
 gi|321147051|gb|EFX41769.1| organic radical activating enzyme [Helicobacter suis HS5]
 gi|321149072|gb|EFX43522.1| hypothetical protein HSUHS1_0174 [Helicobacter suis HS1]
          Length = 246

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 12/140 (8%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           E F +LQGEG   G+ +VF R  GCN      G +    S +   CD+ +      K   
Sbjct: 7   ETFYSLQGEGSCVGQPSVFIRLGGCNFKCVGFGVKSMIDSKEVVGCDSAYAVYPNAKWSY 66

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----VPLIQALNKRGFEIAVETNG 120
               Q   L   + +       + VLTGGEP L  +    +  +Q L+ RG  I VE+NG
Sbjct: 67  LKSAQ-ELLTRLEPLIYPSTLPHIVLTGGEPSLHFNNLILLEALQVLHTRGHTIWVESNG 125

Query: 121 TI----EPPQGIDWICVSPK 136
           ++    + P       +SPK
Sbjct: 126 SVFFEFKAPLNTLHFTLSPK 145


>gi|326203402|ref|ZP_08193266.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325986222|gb|EGD47054.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 249

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 34/126 (26%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV------GIQG 59
           I EIF ++ GEG  AG V  F R +GCNL           +C +CDT +       GIQ 
Sbjct: 13  IIEIFNSVSGEGISAGSVVTFVRAAGCNL-----------RCNYCDTKYSYNELGNGIQV 61

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL----LQVDVPLIQALNKRGFEIA 115
            K      D + +++E          +  + TGGEPL     +  +PL  A   +GF++ 
Sbjct: 62  LKP-----DGIVNILESY------NCKNVLCTGGEPLELNKAKRYLPLYLA--SKGFKVR 108

Query: 116 VETNGT 121
           +ETNG+
Sbjct: 109 IETNGS 114


>gi|289207754|ref|YP_003459820.1| radical SAM protein [Thioalkalivibrio sp. K90mix]
 gi|288943385|gb|ADC71084.1| Radical SAM domain protein [Thioalkalivibrio sp. K90mix]
          Length = 232

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 21/119 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E+F++LQGE   +G    F R +GC L           +CR+CD+ +      +GG  
Sbjct: 25  ITEMFVSLQGEAADSGWPTAFVRLTGCPL-----------RCRWCDSAYA----FEGGEA 69

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
               L  ++   W+ G+   R+  +TGGEPL Q     L+  L   G+ +++ET+G ++
Sbjct: 70  RA--LDSIL--AWV-GQTGVRHVCVTGGEPLAQPGCRELLARLCDDGYRVSLETSGALD 123


>gi|149194883|ref|ZP_01871977.1| hypothetical protein CMTB2_08312 [Caminibacter mediatlanticus TB-2]
 gi|149135042|gb|EDM23524.1| hypothetical protein CMTB2_08312 [Caminibacter mediatlanticus TB-2]
          Length = 232

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 13/122 (10%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           L  I EIF ++QGEG ++G  ++F R  GCNL      ++       CD+ +   +  K 
Sbjct: 5   LLPISEIFYSIQGEGKYSGTPSIFVRVGGCNLTCPGFGNKG------CDSYYAVDKSYKN 58

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
              N+    + I++++    K   + V+TGGEP L  +   PLI+  +    EI +ETN 
Sbjct: 59  EWENLS--IEEIKKEFSKYLKFNPHLVITGGEPTLYYEKLYPLIEWFSG---EITIETNA 113

Query: 121 TI 122
           TI
Sbjct: 114 TI 115


>gi|145591319|ref|YP_001153321.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145283087|gb|ABP50669.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 216

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 23/137 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF +LQGEG + G+ AVF R +GC +           +C +CDT +     + G   
Sbjct: 3   VLEIFASLQGEGVNLGKPAVFVRLAGCPI-----------RCAYCDTKY-SWDFSAGVEM 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ-ALNKRGF-EIAVETNGTIE 123
           +V+++        + G     + V+TGGEPL+     L   A   RG   + VET+G   
Sbjct: 51  SVEEVFAKAASLGVRG-----HVVVTGGEPLIWQRRGLENLACALRGLGAVEVETSGAYS 105

Query: 124 PP----QGIDWICVSPK 136
           P       +D+  VSPK
Sbjct: 106 PTPELDSCVDYYDVSPK 122


>gi|298250150|ref|ZP_06973954.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Ktedonobacter racemifer DSM 44963]
 gi|297548154|gb|EFH82021.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Ktedonobacter racemifer DSM 44963]
          Length = 247

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 15/135 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I E+F  T+QGEG   G+  VF R  GC+            +C+ CDT +  +   +G  
Sbjct: 9   ISELFGCTIQGEGALIGKPTVFVRTGGCDY-----------RCQRCDTLYAVLPEHRG-E 56

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +      ++  +             L+GG P +Q    L+   +  G+  A+ET G+I  
Sbjct: 57  WQQMTTQEVFAQVRELAHNRPILVTLSGGNPAMQPLEELLDLGHTEGYTFAIETQGSIAQ 116

Query: 125 P--QGIDWICVSPKA 137
           P    +D++ +SPKA
Sbjct: 117 PWFAKLDYLTLSPKA 131


>gi|298675035|ref|YP_003726785.1| radical SAM domain-containing protein [Methanohalobium evestigatum
           Z-7303]
 gi|298288023|gb|ADI73989.1| Radical SAM domain protein [Methanohalobium evestigatum Z-7303]
          Length = 239

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 48/108 (44%), Gaps = 29/108 (26%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-----DFVGIQGT 60
           I EIF ++QGEG + G   VF RF GCNL           QC++CDT     DF   +  
Sbjct: 5   ISEIFCSVQGEGPYVGVRQVFVRFIGCNL-----------QCQYCDTQREYVDFCRFEEN 53

Query: 61  KGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
            G           +V+ +A+ IE              LTGGEPL+  D
Sbjct: 54  PGSDEFELIPNPLDVNTVAESIE-----SFSSVHSVSLTGGEPLIHAD 96


>gi|290580634|ref|YP_003485026.1| hypothetical protein SmuNN2025_1108 [Streptococcus mutans NN2025]
 gi|254997533|dbj|BAH88134.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 238

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T QGEG   G+  +F R  GC+             C +CD+ F      K   
Sbjct: 11  VLEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEKPTM 59

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122
              DQ+ + +++    G  +  Y  L+GG P LL  ++  L++ L KR   +AVET G+ 
Sbjct: 60  MTSDQIIEALDK---LGTYD--YVTLSGGNPCLLAANMAQLVRKLKKRQVTLAVETQGSR 114

Query: 123 --EPPQGIDWICVSPK 136
             E  + ID + +SPK
Sbjct: 115 WQEWLKAIDQVTLSPK 130


>gi|56476931|ref|YP_158520.1| radical activating enzyme [Aromatoleum aromaticum EbN1]
 gi|56312974|emb|CAI07619.1| SAM radical family enzyme similar to queE gene product; involved in
           queuosine biosynthesis [Aromatoleum aromaticum EbN1]
          Length = 221

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 29/147 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF +LQGE    G   VF R +GC L           +C +CDT++      +GG  
Sbjct: 14  LTEIFASLQGESTRVGLPTVFVRLTGCPL-----------RCVWCDTEY----AFQGGES 58

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
               +A ++EE  + G      CV TGGEPL Q   + L+ AL   G  +++ET+G    
Sbjct: 59  R--SIASIVEE--VLGHGIEHVCV-TGGEPLAQKSCLALLAALCDAGLSVSLETSG---- 109

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQEL 149
              +D   V P+     DLK  G  E+
Sbjct: 110 --ALDIAAVDPRVSRVMDLKAPGSGEV 134


>gi|24379363|ref|NP_721318.1| hypothetical protein SMU.916c [Streptococcus mutans UA159]
 gi|24377290|gb|AAN58624.1|AE014932_7 conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 243

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T QGEG   G+  +F R  GC+             C +CD+ F      K   
Sbjct: 16  VLEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEKPTM 64

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122
              DQ+ + +++    G  +  Y  L+GG P LL  ++  L++ L KR   +AVET G+ 
Sbjct: 65  MTSDQIIEALDK---LGTYD--YVTLSGGNPCLLAANMAQLVRKLKKRQVTLAVETQGSR 119

Query: 123 --EPPQGIDWICVSPK 136
             E  + ID + +SPK
Sbjct: 120 WQEWLKAIDQVTLSPK 135


>gi|322434490|ref|YP_004216702.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321162217|gb|ADW67922.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 227

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 21/115 (18%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           E++ ++QGE    G   +F RF+GCNL           +C +CD+++     T G  +  
Sbjct: 5   ELYKSVQGESSFTGLPCIFVRFAGCNL-----------RCAWCDSEYT---FTGGNPFTQ 50

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           +++   IE          +    TGGEP+L     +PL+  L  +G+ + +ET+G
Sbjct: 51  EEVIAQIE-----ALAPCKLVEFTGGEPMLHAKELLPLMDVLLTQGYTLMMETSG 100


>gi|118474370|ref|YP_891426.1| radical SAM domain-containing protein [Campylobacter fetus subsp.
           fetus 82-40]
 gi|261886249|ref|ZP_06010288.1| radical SAM domain-containing protein [Campylobacter fetus subsp.
           venerealis str. Azul-94]
 gi|118413596|gb|ABK82016.1| radical SAM domain protein [Campylobacter fetus subsp. fetus 82-40]
          Length = 241

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 15/130 (11%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL----WSGREQDRLSAQCRF-CDT-DFVG 56
           + ++ E F ++QGEG  +GR ++F R  GCNL    +  + +   + +    CDT   V 
Sbjct: 1   MVNVVEYFTSVQGEGKFSGRYSLFIRLGGCNLSCKGFGVKIKSPKTGEILVGCDTIKAVQ 60

Query: 57  IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----VPLIQALNKRGF 112
            +  +  +++ + L +L++E            V+TGGEPLL       +  IQ   ++ +
Sbjct: 61  TEHFEHNKFDFEALVNLVKETEFKP-----LIVITGGEPLLWYKDEDLIKFIQWCFEQNY 115

Query: 113 EIAVETNGTI 122
           E+  ETNG+I
Sbjct: 116 EVHFETNGSI 125


>gi|301167425|emb|CBW27007.1| putative radical SAM domain protein [Bacteriovorax marinus SJ]
          Length = 233

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 44/219 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT----DFVG 56
           MK + I  I+   +GEG H G   +F RF GC           +  C  CD+    DF  
Sbjct: 1   MKSFLINSIYPATEGEGVHIGTPQIFVRFQGC-----------AIGCLNCDSKDTWDFT- 48

Query: 57  IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-----QVDVPLIQALNKRG 111
                G  + +D++   IE+    GE+  R  + TGG+PL      QV + L+  L +RG
Sbjct: 49  -----GRNWTLDEVLGAIEDA--GGERIKRVSI-TGGDPLHPSHTEQVSL-LVSTLKERG 99

Query: 112 FEIAVETNGT---IEPPQGIDWICV---SPKAGCDLKIKGGQELKLVFP---QVNVSPEN 162
           + I +E  GT    E    ID+I     +P  G   +++   +L   +P   Q+    E 
Sbjct: 100 YFINIEAAGTRVVDEIFNKIDFISFDFKTPSTGVKTRVQNLNKLIQNYPNKFQIKAVVET 159

Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLS 201
              F+    +   +    L  N +L+  +C   P + L+
Sbjct: 160 REDFE----ATLDIYNELLSMNESLSFPWCL-TPSYNLN 193


>gi|306833726|ref|ZP_07466852.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           bovis ATCC 700338]
 gi|304424063|gb|EFM27203.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           bovis ATCC 700338]
          Length = 237

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 21/156 (13%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T QGEG   G+  +F R  GC+             C +CD+ F      K  R
Sbjct: 10  ILEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEKPKR 58

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
              D++ + +++    G  +  Y  L+GG P L  +    L+  L  RG  +A+ET G+ 
Sbjct: 59  MTTDEVIEQLDQ---LGTYD--YVTLSGGNPCLLANNMAELVAKLKARGVTLAIETQGSR 113

Query: 123 EPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156
                + ID + +SPK          + L  +  Q+
Sbjct: 114 WQTWLKDIDQVTLSPKPPSSKMTVNFETLDFIVSQL 149


>gi|325978487|ref|YP_004288203.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325178415|emb|CBZ48459.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 237

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T QGEG   G+  +F R  GC+             C +CD+ F      K  R
Sbjct: 10  ILEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEKPKR 58

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
              D++ + +++    G  +  Y  L+GG P L  +    L+  L  RG  +A+ET G+ 
Sbjct: 59  MTADEVIEQLDQ---LGTYD--YVTLSGGNPCLLANNMAELVAKLKARGVTLAIETQGSR 113

Query: 123 EPP--QGIDWICVSPK 136
                + ID + +SPK
Sbjct: 114 WQTWLKDIDQVTLSPK 129


>gi|189219299|ref|YP_001939940.1| Organic radical activating enzyme [Methylacidiphilum infernorum V4]
 gi|189186157|gb|ACD83342.1| Organic radical activating enzyme [Methylacidiphilum infernorum V4]
          Length = 233

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 32/130 (24%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG-R 64
           + E+FL++QGE   AG    F R +GCNL           +CR+CDT +    G     R
Sbjct: 23  VNEMFLSIQGESTFAGYPCAFIRLTGCNL-----------RCRWCDTTYAFSGGKLMPIR 71

Query: 65  YNVDQL----ADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119
             +DQ+      L+E              +TGGEPLLQ + + L+  L   G+E+ +ET+
Sbjct: 72  AVIDQVKAYDVPLVE--------------ITGGEPLLQKNSLYLLTLLCDLGYEVLLETS 117

Query: 120 GTIEPPQGID 129
           G++ P   +D
Sbjct: 118 GSL-PVDRVD 126


>gi|329925161|ref|ZP_08280104.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Paenibacillus sp. HGF5]
 gi|328939994|gb|EGG36327.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Paenibacillus sp. HGF5]
          Length = 264

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 16/135 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G+    
Sbjct: 28  VMEIFGPTVQGEGMVVGRKTMFVRTAGCDY-----------RCSWCDSAFT-WDGSAKDS 75

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI- 122
            ++    ++ +E +  G +   +  L+GG P L   +  L+  L++ G  +AVET G+  
Sbjct: 76  ISLLSADEIWQELYRLGGERFDHVTLSGGNPALLPQLGALVDELHRYGITVAVETQGSRW 135

Query: 123 -EPPQGIDWICVSPK 136
            +    ID + +SPK
Sbjct: 136 QDWLNHIDEVTISPK 150


>gi|78188483|ref|YP_378821.1| radical activating enzyme, putative [Chlorobium chlorochromatii
           CaD3]
 gi|78170682|gb|ABB27778.1| radical activating enzyme, putative [Chlorobium chlorochromatii
           CaD3]
          Length = 226

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 21/116 (18%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF ++QGE   AG    F R +GC              C +CDT +   +G    + 
Sbjct: 11  ISEIFYSIQGEAFFAGFPCAFIRLAGCG-----------HGCNYCDTSYAEEKGELMAQA 59

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
            + + A       I          +TGGEPLLQ  V PL++ L  RG ++ +ET G
Sbjct: 60  EIIKQALSYHAPIIE---------ITGGEPLLQPAVYPLMEELCNRGEQVLLETGG 106


>gi|322392672|ref|ZP_08066132.1| ExsD protein [Streptococcus peroris ATCC 700780]
 gi|321144664|gb|EFX40065.1| ExsD protein [Streptococcus peroris ATCC 700780]
          Length = 238

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K  R
Sbjct: 11  VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122
              D++   +++    G  +  Y  L+GG P LL  ++  L+  L +RG  +AVET G+ 
Sbjct: 60  MTADEVIAALDK---LGTYD--YVTLSGGNPALLAANMAELVTKLKERGVTLAVETQGSR 114

Query: 123 EPP--QGIDWICVSPK 136
                + ID + +SPK
Sbjct: 115 WQTWLKDIDQVTLSPK 130


>gi|292669396|ref|ZP_06602822.1| radical SAM domain protein [Selenomonas noxia ATCC 43541]
 gi|292648957|gb|EFF66929.1| radical SAM domain protein [Selenomonas noxia ATCC 43541]
          Length = 243

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 31/135 (22%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-------FVGI 57
           +I EIF ++QGEG + G   +F R  GCNL            C +CDT+          +
Sbjct: 4   NIIEIFSSIQGEGKYVGCRQIFVRLEGCNL-----------DCTYCDTENEIGRHPHCMV 52

Query: 58  QGTKGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
           +   G           +  + A++I    I G+       +TGGEPLL   VP I+ L  
Sbjct: 53  EEDAGSHALISYENPLSAQRTAEIIAR--IVGDVPHHSLSMTGGEPLLH--VPFIRELAA 108

Query: 110 R-GFEIAVETNGTIE 123
                + +ETNGT++
Sbjct: 109 HVHLPLFLETNGTLD 123


>gi|95929552|ref|ZP_01312294.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
 gi|95134249|gb|EAT15906.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
          Length = 251

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 63/149 (42%), Gaps = 45/149 (30%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E+F ++QGEG   G   VF R +GCNL            C +CDTDF   Q +K  R 
Sbjct: 11  VVELFSSIQGEGPLVGCRQVFLRLAGCNL-----------DCAYCDTDF---QPSKCARI 56

Query: 66  NVDQ-----------------LADLIEEQWITGEKEGRYCV-LTGGEPLLQVD-----VP 102
                                LA L    W   +    + + LTGGEPLL  +     +P
Sbjct: 57  ETQPGSEQFLYWENPLESTRLLAHL--STWKHQQPHLHHSLSLTGGEPLLHAEALKAWLP 114

Query: 103 LIQALNKRGFEIAVETNGTIEPPQGIDWI 131
            +  L    F I +ETNGT+  PQ +  +
Sbjct: 115 QLSTL----FPIQLETNGTL--PQALQLV 137


>gi|39996820|ref|NP_952771.1| radical SAM domain-containing protein [Geobacter sulfurreducens
           PCA]
 gi|39983708|gb|AAR35098.1| radical SAM domain protein [Geobacter sulfurreducens PCA]
 gi|298505829|gb|ADI84552.1| 7-carboxy-7-deazaguanine synthase [Geobacter sulfurreducens KN400]
          Length = 250

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 30/140 (21%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT------DFVGIQG 59
           ++E+F ++QGEG   G   VF RF GCNL            C +CDT      +   I+ 
Sbjct: 8   LEEVFSSVQGEGMLIGLRQVFIRFRGCNL-----------TCDYCDTPAGTPAEPCRIEQ 56

Query: 60  TKGGR--------YNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVDVPLIQALN-- 108
           T G R         ++D++A L+ E W  G       + +TGGEPLL+ D+ L+Q L   
Sbjct: 57  TPGRRDFVPADNPVSLDRVAALV-EGWQRGWPGVHDSISITGGEPLLRHDI-LMQWLPVL 114

Query: 109 KRGFEIAVETNGTIEPPQGI 128
           +    + +ETNG +    G+
Sbjct: 115 REHLPVYLETNGVMHAALGL 134


>gi|145219296|ref|YP_001130005.1| radical SAM domain-containing protein [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205460|gb|ABP36503.1| Radical SAM domain protein [Chlorobium phaeovibrioides DSM 265]
          Length = 223

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 57/135 (42%), Gaps = 36/135 (26%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           L  I EIF ++QGE  +AG    F R +GC           S  CR+CD+ +        
Sbjct: 5   LLKISEIFRSIQGESSYAGWPCAFIRLAGC-----------SHNCRYCDSLY-------- 45

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVL-------TGGEPLLQVDVP-LIQALNKRGFEI 114
                   A   EE+  T E   R   L       TGGEPL Q  V  L+  L   G ++
Sbjct: 46  --------ARNTEERLTTREVVSRALALKTEIIEITGGEPLEQPGVHQLMTELCNTGRKV 97

Query: 115 AVETNGTIEPPQGID 129
            +ET G I P  GID
Sbjct: 98  LLETGGFI-PVAGID 111


>gi|254504058|ref|ZP_05116209.1| radical SAM domain protein [Labrenzia alexandrii DFL-11]
 gi|222440129|gb|EEE46808.1| radical SAM domain protein [Labrenzia alexandrii DFL-11]
          Length = 242

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G+  VF R  GC+            +C +CDT        +   
Sbjct: 8   VNEIFGPTIQGEGALIGQPTVFVRTGGCDY-----------RCSWCDTLHAVDSAYRDDW 56

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           + +   A L++ + ++G K      L+GG P +Q    LI+   + G+  A+ET G+I  
Sbjct: 57  HPMTPQAILMQIEILSGGKP-LMVSLSGGNPAIQPLGSLIELGKREGYRFALETQGSIAK 115

Query: 125 P--QGIDWICVSPK 136
                +D + +SPK
Sbjct: 116 DWFAALDVLTLSPK 129


>gi|167630604|ref|YP_001681103.1| radical sam domain protein, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167593344|gb|ABZ85092.1| radical sam domain protein, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 246

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 61/136 (44%), Gaps = 36/136 (26%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EI ++ QGEG   G   VF RF GCNL            C +CDT      G++G R 
Sbjct: 10  LVEIMVSAQGEGPWIGCRQVFLRFFGCNL-----------SCSYCDT-----PGSRGPRP 53

Query: 66  NV--------DQLADLIEEQWITGEKEGRY---------CVLTGGEPLLQVDV--PLIQA 106
           +           L DL E   +T ++   Y           LTGGEPLL V+    LI  
Sbjct: 54  SACRIEKEPGSSLFDLWENP-VTVDRVAEYLCHTVPIHSVSLTGGEPLLHVEFIQQLIPL 112

Query: 107 LNKRGFEIAVETNGTI 122
           L  +  ++ +ETNGT+
Sbjct: 113 LGAQRPDLYLETNGTL 128


>gi|295401301|ref|ZP_06811273.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312111879|ref|YP_003990195.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. Y4.1MC1]
 gi|294976708|gb|EFG52314.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216980|gb|ADP75584.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. Y4.1MC1]
          Length = 243

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 16/139 (11%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           K   + EIF  T+QGEG   G+  +F R +GC+             CR+CD+ F    G+
Sbjct: 3   KKIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCRWCDSAFTW-DGS 50

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
             G         + E     G    R+  ++GG P L+Q    L+  L  +G  IAVET 
Sbjct: 51  AKGEIRQMTAGQIWERLCELGGDRFRHVTISGGNPVLIQALEELVLLLKNKGVRIAVETQ 110

Query: 120 GTI--EPPQGIDWICVSPK 136
           G+   +    ID + +SPK
Sbjct: 111 GSRWQDWLYDIDDVTISPK 129


>gi|147677735|ref|YP_001211950.1| organic radical activating enzymes [Pelotomaculum thermopropionicum
           SI]
 gi|146273832|dbj|BAF59581.1| organic radical activating enzymes [Pelotomaculum thermopropionicum
           SI]
          Length = 245

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 61/138 (44%), Gaps = 31/138 (22%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56
           M+ Y + EIF ++QGEG   G   VF RF GCNL            C FCDT + G    
Sbjct: 1   MRAY-VSEIFSSVQGEGLLTGCRQVFIRFYGCNL-----------NCSFCDTKYGGPPAC 48

Query: 57  --IQGTKGG---RY--NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-----VPLI 104
             I+    G   RY  N  ++ +                 LTGGEPLL        +PL+
Sbjct: 49  CRIESLPAGGDFRYLPNPLKVGEAASAAASYDLSLHHSVSLTGGEPLLHTAFLKELIPLV 108

Query: 105 QALNKRGFEIAVETNGTI 122
           +   + G  I +ETNGT+
Sbjct: 109 KG-TRHG--IYLETNGTL 123


>gi|157692046|ref|YP_001486508.1| queuosine biosynthesis protein [Bacillus pumilus SAFR-032]
 gi|157680804|gb|ABV61948.1| queuosine biosynthesis protein [Bacillus pumilus SAFR-032]
          Length = 243

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 16/139 (11%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           K   + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G+
Sbjct: 3   KAIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGS 50

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
                      D+++E    G +   +  ++GG P LL+    LI  L+++G + A+ET 
Sbjct: 51  AKHDIQWLHAEDIVKELKRIGGQAFSHVTISGGNPALLKQMESLIDLLHEKGIDTALETQ 110

Query: 120 GTIEPP--QGIDWICVSPK 136
           GT+       ID + +SPK
Sbjct: 111 GTMYQDWFLKIDDLTISPK 129


>gi|254464092|ref|ZP_05077503.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Rhodobacterales bacterium Y4I]
 gi|206685000|gb|EDZ45482.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Rhodobacterales bacterium Y4I]
          Length = 236

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 15/139 (10%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    I EIF  T+QGEG   G   VF R  GC+            +C +CD+    +  
Sbjct: 1   MTTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDS-MHAVDS 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
                + V    D++ E       +     ++GG P +Q   P+I    + G+  A ET 
Sbjct: 49  AYRHDWAVKTPEDVMAEVRRLSGGKPLTVSISGGNPAIQDFAPVIAIGKEEGYRFACETQ 108

Query: 120 GTIEPP--QGIDWICVSPK 136
           G++  P    +D + +SPK
Sbjct: 109 GSVSQPWFADLDTLVLSPK 127


>gi|126459256|ref|YP_001055534.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126248977|gb|ABO08068.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548]
          Length = 216

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 35/143 (24%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-----GIQGT 60
           + EIF +LQGEG + G+ AVF R +GC +           +C +CDT++      G++ +
Sbjct: 3   VLEIFASLQGEGVNLGKPAVFVRLAGCPI-----------RCVYCDTEYSWDFNGGVEMS 51

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV---PLIQALNKRGFEIAVE 117
            G      +     EE  + G     + V+TGGEPL+ +      L+  L + G  + VE
Sbjct: 52  PG------EAVRRAEELGVRG-----HVVVTGGEPLVWMRRGLEELVCGLRRLG-AVEVE 99

Query: 118 TNGTIEPPQGIDWIC----VSPK 136
           T+G   P   +D       VSPK
Sbjct: 100 TSGVYAPTPELDACADFYDVSPK 122


>gi|85707657|ref|ZP_01038723.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter sp.
           NAP1]
 gi|85689191|gb|EAQ29194.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter sp.
           NAP1]
          Length = 245

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 59/146 (40%), Gaps = 32/146 (21%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV------------ 55
           EIF ++QGEG   G    F R S CNL            C +CDT +             
Sbjct: 15  EIFASIQGEGPSMGTPVAFIRLSRCNL-----------ACTWCDTAYTWRFEGDNRPHRD 63

Query: 56  GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN-KRGFEI 114
           GI+  +         A    +  + G+K     V+TGGEPL+Q   PL   L      E+
Sbjct: 64  GIEYERKANQVALSPAKAAAKIAVLGQKR---LVITGGEPLMQCG-PLADMLAILPDIEV 119

Query: 115 AVETNGTIEPPQGIDWIC----VSPK 136
            +ETNGT      ID       VSPK
Sbjct: 120 EIETNGTTRASAHIDIRVDQYNVSPK 145


>gi|325294503|ref|YP_004281017.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325064951|gb|ADY72958.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 224

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 98/239 (41%), Gaps = 52/239 (21%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +I E+F +LQGEG   G  + F R SGC           S  C++CDT +      KG  
Sbjct: 6   AISELFTSLQGEGLDLGAPSFFIRISGC-----------SIGCKYCDTKY---SWKKGKL 51

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALN--KRGFEIAVETNGT 121
           +++D L   + +  I         ++TGGEP+ + ++  LI+ L+  +   +I +ET G 
Sbjct: 52  WDIDSLVKEVLKSKIPE------VIVTGGEPVEEKNLSILIKRLSDLETVRKITLETCGH 105

Query: 122 I------EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS--- 172
           I       P   I      P  G D   +  ++    + QV +    Y   D E      
Sbjct: 106 IFRDDLKYPKLKIVLSPKPPTMGVDFPTETLEKFLTTYEQVYIKFAAYDQKDLEVIKEFA 165

Query: 173 ------------LQPMDGPFLEENTN------LAIS--YCFQNPKWRLSVQTHKFIGIR 211
                       +QP++ PF + +        L IS      + + ++  Q HK IG++
Sbjct: 166 YKNKNLIRAPIVIQPLEVPFEDYSYTSKRIFELVISDRKFINDFEIKIIPQIHKLIGLK 224


>gi|291533826|emb|CBL06939.1| Organic radical activating enzymes [Megamonas hypermegale ART12/1]
          Length = 249

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 43/195 (22%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV---------- 55
           + EIF ++QGEG + G   +F R  GCN+            C +CDTD +          
Sbjct: 8   VSEIFSSIQGEGKYVGCRQLFIRLIGCNM-----------DCPYCDTDKLAHSNLVPCVL 56

Query: 56  ----GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNK 109
               G +G    +  +D L D++       ++      +TGGEPLL  Q+ + L + L  
Sbjct: 57  EKCEGYEGDLELKNPLD-LNDIMPYINYRLQQPHHSISITGGEPLLYPQIILELAKNLKP 115

Query: 110 RGFEIAVETNGTI-----EPPQGIDWICVSPKAGCDLKIKGGQE----LKL-----VFPQ 155
               + +ETNGT+     +    ID I +  K   D+     QE    LKL     V+ +
Sbjct: 116 LSIPLFLETNGTLVKQLAQVIDEIDIISMDMKLPSDIGKAYWQEHEEFLKLASKKDVYVK 175

Query: 156 VNVSPENYIGFDFER 170
           + VS E+ +  DFE+
Sbjct: 176 IVVSNESTVE-DFEK 189


>gi|83953730|ref|ZP_00962451.1| radical SAM domain protein [Sulfitobacter sp. NAS-14.1]
 gi|83841675|gb|EAP80844.1| radical SAM domain protein [Sulfitobacter sp. NAS-14.1]
          Length = 236

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 15/139 (10%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    I E+F  T+QGEG   G   VF R  GC+            +C +CD+       
Sbjct: 1   MSQLRIAEVFGPTIQGEGALIGEPTVFVRTGGCDY-----------RCAWCDSMHAVDPA 49

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
            +    ++   A   E Q ++ +       L+GG P +Q   PLIQ  +  G+  A ET 
Sbjct: 50  FRHDWASMSTDAVWNEVQRLS-DNTPLTVSLSGGNPAIQDFAPLIQLGHAAGYRFACETQ 108

Query: 120 GTIEPPQ--GIDWICVSPK 136
           G+I  P    +D + +SPK
Sbjct: 109 GSIAKPWFGQLDCLVLSPK 127


>gi|55820876|ref|YP_139318.1| putative coenzyme PQQ synthesis protein [Streptococcus thermophilus
           LMG 18311]
 gi|55822792|ref|YP_141233.1| putative coenzyme PQQ synthesis protein [Streptococcus thermophilus
           CNRZ1066]
 gi|116627685|ref|YP_820304.1| putative coenzyme PQQ synthesis protein [Streptococcus thermophilus
           LMD-9]
 gi|55736861|gb|AAV60503.1| hypothetical protein, coenzyme PQQ synthesis homologue
           [Streptococcus thermophilus LMG 18311]
 gi|55738777|gb|AAV62418.1| hypothetical protein, coenzyme PQQ synthesis homologue
           [Streptococcus thermophilus CNRZ1066]
 gi|116100962|gb|ABJ66108.1| Pyruvate-formate lyase-activating enzyme [Streptococcus
           thermophilus LMD-9]
          Length = 238

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K  R
Sbjct: 11  VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122
              D++ + ++     G  +  Y  L+GG P LL  ++  L+  L  R   +AVET G+ 
Sbjct: 60  MTADEVIEALD---ALGTYD--YVTLSGGNPALLAANMAELVSKLKARDVTLAVETQGSR 114

Query: 123 --EPPQGIDWICVSPK 136
             E  + ID + +SPK
Sbjct: 115 WQEWLREIDQVTLSPK 130


>gi|312278215|gb|ADQ62872.1| Pyruvate-formate lyase-activating enzyme [Streptococcus
           thermophilus ND03]
          Length = 238

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K  R
Sbjct: 11  VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122
              D++ + ++     G  +  Y  L+GG P LL  ++  L+  L  R   +AVET G+ 
Sbjct: 60  MTADEVIEALD---ALGTYD--YVTLSGGNPALLAANMAELVSKLKARDVTLAVETQGSR 114

Query: 123 --EPPQGIDWICVSPK 136
             E  + ID + +SPK
Sbjct: 115 WQEWLREIDQVTLSPK 130


>gi|163742266|ref|ZP_02149654.1| organic-radical-activating protein [Phaeobacter gallaeciensis 2.10]
 gi|161384596|gb|EDQ08977.1| organic-radical-activating protein [Phaeobacter gallaeciensis 2.10]
          Length = 246

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 59/138 (42%), Gaps = 23/138 (16%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+           R
Sbjct: 16  IAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDS-----LHAVDSR 59

Query: 65  YNVDQLADLIEEQW--ITGEKEGR--YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           Y         +E W  +T    G+     L+GG P +Q   PLI    + G+  A ET G
Sbjct: 60  YRDTWAPMATDEVWQEVTRLSGGQPLTVSLSGGNPAIQNFAPLIAQGKEAGYRFACETQG 119

Query: 121 TIEPP--QGIDWICVSPK 136
           +I  P    +D + +SPK
Sbjct: 120 SISQPWFAALDTLVLSPK 137


>gi|124516513|gb|EAY58021.1| putative radical SAM family protein [Leptospirillum rubarum]
 gi|206603410|gb|EDZ39890.1| Putative radical activating enzyme [Leptospirillum sp. Group II
           '5-way CG']
          Length = 212

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 24/141 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E F ++QGE  ++G    F R +GC L           +CR+CDT +    G +    
Sbjct: 3   ITETFRSIQGESRYSGWPCFFIRTTGCPL-----------RCRWCDTTYSFYGGEE---R 48

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124
            VD    L+ E   +G        +TGGEP +Q ++P L Q L   G  + +ET+G    
Sbjct: 49  TVDS---LVGEAVSSGTS---LVEITGGEPFVQPELPELCQKLLDLGKTVLIETSGGFPV 102

Query: 125 PQGIDWICVSPKAGCDLKIKG 145
           P G++  C   +   DLK  G
Sbjct: 103 PSGLNREC---RLIVDLKPPG 120


>gi|322388780|ref|ZP_08062377.1| ExsD protein [Streptococcus infantis ATCC 700779]
 gi|321140399|gb|EFX35907.1| ExsD protein [Streptococcus infantis ATCC 700779]
          Length = 238

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K  R
Sbjct: 11  VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122
              D+   +I E    G  +  Y  L+GG P +L  ++  L+  L +RG  +AVET G+ 
Sbjct: 60  MTADE---VIAELDKLGSYD--YVTLSGGNPAILAANMAQLVTKLKERGITLAVETQGSR 114

Query: 123 EPP--QGIDWICVSPK 136
                + ID + +SPK
Sbjct: 115 WQNWLKDIDQVTLSPK 130


>gi|291279399|ref|YP_003496234.1| hypothetical protein DEFDS_1008 [Deferribacter desulfuricans SSM1]
 gi|290754101|dbj|BAI80478.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 231

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 90/239 (37%), Gaps = 46/239 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD------FVGIQG 59
           +KEIF ++QGEG + G   +F RF+GCN+            C  CDT+      F+    
Sbjct: 6   VKEIFKSVQGEGKYVGARQLFIRFAGCNI-----------NCVGCDTNYTVDRYFLCCDK 54

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117
                   D L +L+   +           LTGGEPL+  D     +Q L   G    +E
Sbjct: 55  KYENPVTPDNLFNLVVNNFDLNLFHS--VSLTGGEPLIYCDFLKLFLQYLKNAGVRTFLE 112

Query: 118 TNGTI-----EPPQGIDWICVSPKA----GCDLKIKGGQELKLVFPQVNV---------- 158
           T+G I     E    +D I V  K     G +    G  +LK +  +V            
Sbjct: 113 TSGLIVDSILELEDYLDIISVDLKLKEVFGVEFNRDGIIKLKDINEKVYFKIVVGENLPL 172

Query: 159 -SPENYI----GFDFERFSLQPMDGPFLEENTNLAISYC-FQNPKWRLSVQTHKFIGIR 211
              EN I    G   E   +  +D  F     +  +  C + N       Q HK IG++
Sbjct: 173 EKIENTIHLIKGIGVEELYIHFIDNKFNYSLLDKILDLCYYHNVMAYFIPQVHKLIGMK 231


>gi|110596862|ref|ZP_01385152.1| Radical SAM [Chlorobium ferrooxidans DSM 13031]
 gi|110341549|gb|EAT60009.1| Radical SAM [Chlorobium ferrooxidans DSM 13031]
          Length = 224

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 22/118 (18%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +I EIF ++QGE  +AG    F R +GC              CR CDT +    G +   
Sbjct: 7   NISEIFHSIQGESSYAGWPCTFIRLAGC-----------GHGCRHCDTAYAEHPGRE--- 52

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFE-IAVETNG 120
            N++++ + + E             +TGGEPLLQ +V PL++ L  R  E + +ET G
Sbjct: 53  MNIEEIIERVVEL------GAPLVEITGGEPLLQEEVYPLMEKLCNRWKERVLLETGG 104


>gi|270293087|ref|ZP_06199298.1| ExsD protein [Streptococcus sp. M143]
 gi|270279066|gb|EFA24912.1| ExsD protein [Streptococcus sp. M143]
          Length = 238

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K  R
Sbjct: 11  VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122
              D++   +++    G  +  Y  L+GG P +L  ++  L+  L +RG  +AVET G+ 
Sbjct: 60  MTADEVIAALDK---LGSYD--YVTLSGGNPAILAANMAQLVTKLKERGVTLAVETQGSR 114

Query: 123 EPP--QGIDWICVSPK 136
                + ID + +SPK
Sbjct: 115 WQNWLKDIDQVTLSPK 130


>gi|307705450|ref|ZP_07642305.1| pyruvate-formate lyase-activating enzyme [Streptococcus mitis
           SK597]
 gi|307620985|gb|EFO00067.1| pyruvate-formate lyase-activating enzyme [Streptococcus mitis
           SK597]
          Length = 238

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K  R
Sbjct: 11  VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122
              D++   +++    G  +  Y  L+GG P +L  ++  L+  L +RG  +AVET G+ 
Sbjct: 60  MTADEVIAALDK---LGSYD--YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQGSR 114

Query: 123 EPP--QGIDWICVSPK 136
                + ID + +SPK
Sbjct: 115 WQNWLKDIDQVTLSPK 130


>gi|241206476|ref|YP_002977572.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860366|gb|ACS58033.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 242

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 61/147 (41%), Gaps = 41/147 (27%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G   VF R  GC+            +C +CD+            
Sbjct: 8   VSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDS-----------L 45

Query: 65  YNVDQLADLIEEQWITGEKEGRY-------------CVLTGGEPLLQVDVPLIQALNKRG 111
           + VD        QWI    E  +               L+GG P +Q   PLI+  + RG
Sbjct: 46  HAVDSA---FRNQWIPMSTEAVWHKVTELSGGKPLTVSLSGGNPAIQPLRPLIELGHSRG 102

Query: 112 FEIAVETNGTIEPP--QGIDWICVSPK 136
           +  A+ET G+I     + +D + VSPK
Sbjct: 103 YRFALETQGSIAQSWFRDLDVLVVSPK 129


>gi|331265893|ref|YP_004325523.1| hypothetical protein SOR_0520 [Streptococcus oralis Uo5]
 gi|326682565|emb|CBZ00182.1| conserved hypothetical protein [Streptococcus oralis Uo5]
          Length = 238

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K  R
Sbjct: 11  VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122
              D++   +++    G  +  Y  L+GG P +L  ++  L+  L +RG  +AVET G+ 
Sbjct: 60  MTADEVIAALDK---LGSYD--YVTLSGGNPAILAANMAQLVTKLKERGVTLAVETQGSR 114

Query: 123 EPP--QGIDWICVSPK 136
                + ID + +SPK
Sbjct: 115 WQNWLKDIDQVTLSPK 130


>gi|162450849|ref|YP_001613216.1| radical activating enzyme [Sorangium cellulosum 'So ce 56']
 gi|161161431|emb|CAN92736.1| radical activating enzyme [Sorangium cellulosum 'So ce 56']
          Length = 217

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 21/116 (18%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EI+ ++QGE   AG    F R +GCNL           +C +CDT     Q   GG+ 
Sbjct: 8   VHEIYASVQGESTFAGLPCTFVRLTGCNL-----------RCAWCDTS----QAFYGGKR 52

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNG 120
              +  +++E     G        LTGGEPLLQ    PL+  L   G  + VET+G
Sbjct: 53  I--RRGEVLERALALGTP---LVELTGGEPLLQPGSFPLLAELCDAGRTVLVETSG 103


>gi|307709658|ref|ZP_07646110.1| pyruvate-formate lyase-activating enzyme [Streptococcus mitis
           SK564]
 gi|307619556|gb|EFN98680.1| pyruvate-formate lyase-activating enzyme [Streptococcus mitis
           SK564]
          Length = 238

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K  R
Sbjct: 11  VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122
              D++   +++    G  +  Y  L+GG P +L  ++  L+  L +RG  +AVET G+ 
Sbjct: 60  MTADEVIAALDK---LGSYD--YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQGSR 114

Query: 123 EPP--QGIDWICVSPK 136
                + ID + +SPK
Sbjct: 115 WQNWLKDIDQVTLSPK 130


>gi|307707096|ref|ZP_07643893.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           mitis SK321]
 gi|307617622|gb|EFN96792.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           mitis SK321]
          Length = 238

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K  R
Sbjct: 11  VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122
              D++   +++    G  +  Y  L+GG P +L  ++  L+  L +RG  +AVET G+ 
Sbjct: 60  MTADEVIAALDK---LGSYD--YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQGSR 114

Query: 123 EPP--QGIDWICVSPK 136
                + ID + +SPK
Sbjct: 115 WQNWLKDIDQVTLSPK 130


>gi|293365938|ref|ZP_06612641.1| ExsD protein [Streptococcus oralis ATCC 35037]
 gi|307702341|ref|ZP_07639299.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           oralis ATCC 35037]
 gi|322375722|ref|ZP_08050234.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Streptococcus sp. C300]
 gi|291315616|gb|EFE56066.1| ExsD protein [Streptococcus oralis ATCC 35037]
 gi|307624144|gb|EFO03123.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           oralis ATCC 35037]
 gi|321279430|gb|EFX56471.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Streptococcus sp. C300]
          Length = 238

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K  R
Sbjct: 11  VLEIFGPTFQGEGRAIGQKTMFVRTTGCDY-----------HCDWCDSAFTWDGSEKPTR 59

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122
              D++   +++    G  +  Y  L+GG P +L  ++  L+  L +RG  +AVET G+ 
Sbjct: 60  MTADEVIAALDK---LGSYD--YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQGSR 114

Query: 123 EPP--QGIDWICVSPK 136
                + ID + +SPK
Sbjct: 115 WQNWLKDIDQVTLSPK 130


>gi|167461680|ref|ZP_02326769.1| Radical SAM domain protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 245

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 16/135 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G+  +F R +GC+            +C +CD+ F    G+   +
Sbjct: 6   VLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCSWCDSSFTW-DGSGKDQ 53

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI- 122
             +    D++EE    G K   +  ++GG P+L   +  L+  L  +G   A+ET G+  
Sbjct: 54  IRMLSPEDIVEELKRLGGKRFSHVTISGGNPVLLSQMGKLVSLLQSQGIRTAIETQGSKW 113

Query: 123 -EPPQGIDWICVSPK 136
            +    +D + +SPK
Sbjct: 114 QDWLLAVDDVTLSPK 128


>gi|163738317|ref|ZP_02145732.1| Radical SAM [Phaeobacter gallaeciensis BS107]
 gi|161388238|gb|EDQ12592.1| Radical SAM [Phaeobacter gallaeciensis BS107]
          Length = 265

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 60/138 (43%), Gaps = 23/138 (16%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+           R
Sbjct: 35  IAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDS-----LHAVDSR 78

Query: 65  YNVDQLADLIEEQW--ITGEKEGR--YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           Y    +    +E W  +T    G+     L+GG P +Q   PLI    + G+  A ET G
Sbjct: 79  YRDTWVPMATDEVWQEVTRLSGGQPLTVSLSGGNPAIQNFAPLIAQGKEAGYRFACETQG 138

Query: 121 TIEPP--QGIDWICVSPK 136
           +I  P    +D + +SPK
Sbjct: 139 SISQPWFAQLDTLVLSPK 156


>gi|322377478|ref|ZP_08051969.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Streptococcus sp. M334]
 gi|321281678|gb|EFX58687.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Streptococcus sp. M334]
          Length = 238

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K  R
Sbjct: 11  VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122
              D++   +++    G  +  Y  L+GG P +L  ++  L+  L +RG  +AVET G+ 
Sbjct: 60  MTADEVIAALDK---LGSYD--YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQGSR 114

Query: 123 EPP--QGIDWICVSPK 136
                + ID + +SPK
Sbjct: 115 WQNWLKDIDQVTLSPK 130


>gi|307707501|ref|ZP_07643983.1| coenzyme PQQ synthesis [Streptococcus mitis NCTC 12261]
 gi|307616453|gb|EFN95644.1| coenzyme PQQ synthesis [Streptococcus mitis NCTC 12261]
          Length = 238

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K  R
Sbjct: 11  VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122
              D++   +++    G  +  Y  L+GG P +L  ++  L+  L +RG  +AVET G+ 
Sbjct: 60  MTADEVIAALDK---LGNYD--YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQGSR 114

Query: 123 EPP--QGIDWICVSPK 136
                + ID + +SPK
Sbjct: 115 WQNWLKDIDQVTLSPK 130


>gi|322383448|ref|ZP_08057228.1| queuosine biosynthesis enzyme-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321152249|gb|EFX45075.1| queuosine biosynthesis enzyme-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 240

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 16/133 (12%)

Query: 8   EIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
           EIF  T+QGEG   G+  +F R +GC+            +C +CD+ F    G+   +  
Sbjct: 3   EIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCSWCDSSFTW-DGSGKDQIR 50

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI--E 123
           +    D++EE    G K   +  ++GG P+L   +  L+  L  +G   A+ET G+   +
Sbjct: 51  MLSPEDIVEELKRLGGKRFSHVTISGGNPVLLSQMGKLVSLLQSQGIRTAIETQGSKWQD 110

Query: 124 PPQGIDWICVSPK 136
               +D + +SPK
Sbjct: 111 WLLAVDDVTLSPK 123


>gi|315613640|ref|ZP_07888547.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           sanguinis ATCC 49296]
 gi|315314331|gb|EFU62376.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           sanguinis ATCC 49296]
          Length = 238

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K  R
Sbjct: 11  VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122
              D++   +++    G  +  Y  L+GG P +L  ++  L+  L +RG  +AVET G+ 
Sbjct: 60  MTADEVIAALDK---LGSYD--YVTLSGGNPAILAANMAQLVTKLKERGVTLAVETQGSR 114

Query: 123 EPP--QGIDWICVSPK 136
                + ID + +SPK
Sbjct: 115 WQNWLKDIDQVTLSPK 130


>gi|306824721|ref|ZP_07458065.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|304432932|gb|EFM35904.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
          Length = 238

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K  R
Sbjct: 11  VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPTR 59

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122
              D+   +I E    G  +  Y  L+GG P +L  ++  L+  L +RG  +AVET G+ 
Sbjct: 60  MTADE---VIAELDKLGSYD--YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQGSR 114

Query: 123 EPP--QGIDWICVSPK 136
                + ID + +SPK
Sbjct: 115 WQNWLKDIDQVTLSPK 130


>gi|194014564|ref|ZP_03053181.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus pumilus ATCC 7061]
 gi|194013590|gb|EDW23155.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus pumilus ATCC 7061]
          Length = 243

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 20/141 (14%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           K   + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F      
Sbjct: 3   KAIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW---N 48

Query: 61  KGGRYNVDQLA--DLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVE 117
              ++++  L   D+++E    G +   +  ++GG P LL+    LI  L++ G + A+E
Sbjct: 49  GSAKHDIQWLHAEDIVKELKRIGGQAFSHVTISGGNPALLKQMESLIDLLHEEGIDTALE 108

Query: 118 TNGTIEPP--QGIDWICVSPK 136
           T GT+       ID + +SPK
Sbjct: 109 TQGTMYQDWFLKIDDLTISPK 129


>gi|320108730|ref|YP_004184320.1| Radical SAM domain-containing protein [Terriglobus saanensis
           SP1PR4]
 gi|319927251|gb|ADV84326.1| Radical SAM domain protein [Terriglobus saanensis SP1PR4]
          Length = 229

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 23/117 (19%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           E++ ++QGE    G   +F R +GCNL           +C +CD+++    GT    +  
Sbjct: 5   ELYKSVQGESSFTGMPCIFVRSAGCNL-----------RCAWCDSEYTFSGGTP---FTE 50

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQAL--NKRGFEIAVETNG 120
           D++   IE          R    TGGEP+L     +PL++ L  + RG+ + +ET+G
Sbjct: 51  DEIVAQIE-----ALAPCRLIEFTGGEPMLHAKELLPLMRRLLADPRGYTLMMETSG 102


>gi|251798291|ref|YP_003013022.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Paenibacillus sp. JDR-2]
 gi|247545917|gb|ACT02936.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Paenibacillus sp. JDR-2]
          Length = 242

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 16/139 (11%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           K   + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    GT
Sbjct: 4   KRIPVMEIFGPTVQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFT-WDGT 51

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
                 +   ++++ E    G     +  L+GG P LL+    L+ AL++ G  +AVET 
Sbjct: 52  GKDDTRMLTASEIVGELRELGGNTFSHVTLSGGNPALLKNADELVDALHRDGVRVAVETQ 111

Query: 120 GTI--EPPQGIDWICVSPK 136
           G+   +    ID + +SPK
Sbjct: 112 GSRWQDWLLAIDELTLSPK 130


>gi|91773249|ref|YP_565941.1| radical SAM family Fe-S protein [Methanococcoides burtonii DSM
           6242]
 gi|91712264|gb|ABE52191.1| Fe-S protein, radical SAM family [Methanococcoides burtonii DSM
           6242]
          Length = 238

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 44/105 (41%), Gaps = 23/105 (21%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-----FVGIQGT 60
           I EIF ++QGEG H G    F RF GCNL            C +CDT+         + T
Sbjct: 5   ISEIFCSVQGEGPHVGVRQAFVRFIGCNL-----------NCSYCDTEPADPSVCMFERT 53

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRY-----CVLTGGEPLLQVD 100
            G     +    L+  Q    E  G Y       LTGGEPLL  D
Sbjct: 54  PGSNSFENIPNPLVTSQ--VSELLGNYGNIHSVSLTGGEPLLHAD 96


>gi|254469727|ref|ZP_05083132.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Pseudovibrio sp. JE062]
 gi|211961562|gb|EEA96757.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Pseudovibrio sp. JE062]
          Length = 246

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 25/144 (17%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M   SI EIF  T+QGEG   G   VF R  GC+            +C +CDT    +  
Sbjct: 7   MSKLSISEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDT----LHA 51

Query: 60  TKGG-RYNVDQLADLIEEQWITGEK----EGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
                R+  DQ+    E+ W   E+    +     L+GG P +Q    LI     +G++ 
Sbjct: 52  VDSAYRHTWDQMDS--EDVWKKVEELSCGQPITVSLSGGNPAIQDFSKLIALGKAKGYKF 109

Query: 115 AVETNGTIEPP--QGIDWICVSPK 136
           A+ET G++       +D + +SPK
Sbjct: 110 AIETQGSVARDWFADLDTLVLSPK 133


>gi|51244018|ref|YP_063902.1| hypothetical protein DP0166 [Desulfotalea psychrophila LSv54]
 gi|50875055|emb|CAG34895.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 212

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 22/126 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + EIF ++QGEG   GR A F R SGC          +   C +CDT         G
Sbjct: 5   ILDVHEIFTSIQGEGPLMGRPASFLRLSGC----------VEPLCPWCDTKQA---WGPG 51

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIAVETN 119
              +V+++A  +           R C++TGGEP LQ +     L + L   G EI  ET+
Sbjct: 52  KTISVEEVASRLIAL------GNRLCIITGGEPFLQWESGLNLLERLLLTEGIEIQYETS 105

Query: 120 GTIEPP 125
           G +  P
Sbjct: 106 GKVLIP 111


>gi|304437068|ref|ZP_07397031.1| radical SAM domain protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370019|gb|EFM23681.1| radical SAM domain protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 248

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 64/154 (41%), Gaps = 30/154 (19%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-FVGIQGT--- 60
           +I EIF T+QGEG + G   VF R  GCNL            C +CDT+  VG+      
Sbjct: 9   NIIEIFSTVQGEGKYVGCRQVFLRLEGCNL-----------HCSYCDTNSAVGMHPDCVV 57

Query: 61  --KGGRYNVDQLADLIEEQWITGEKE-------GRYCVLTGGEPLLQVDVPLIQALNKR- 110
               G Y++    + I  Q      E        +   +TGGEPLL      I AL    
Sbjct: 58  EEGAGTYHLVPYPNPISPQRAAELVEIAAAGVPHQALNITGGEPLLHAA--FIHALAPHV 115

Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144
              I +E+NGT+         CV   AG  + IK
Sbjct: 116 HLPIYLESNGTLHEELK---KCVDCVAGISMDIK 146


>gi|222150713|ref|YP_002559866.1| hypothetical protein MCCL_0463 [Macrococcus caseolyticus JCSC5402]
 gi|222119835|dbj|BAH17170.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 236

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 16/156 (10%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   GR  +F R +GC+             C +CD+ F    GT    
Sbjct: 5   VLEIFGPTIQGEGAVIGRKTMFVRTAGCDF-----------SCAWCDSKFTW-DGTMKDE 52

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
             +     + E        +  +  ++GG P L  ++   +  L  +G E+A+ET GT  
Sbjct: 53  IEMLLPETIYERLQSIAPNQFNHVTISGGNPALIKNLAGFVSLLQDKGIEVALETQGTKF 112

Query: 124 PP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
                 ID + +SPK           +L  V  +++
Sbjct: 113 QSWMTEIDQLTISPKPPSSTMTHDLDQLDAVLHELD 148


>gi|312865269|ref|ZP_07725497.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Streptococcus downei F0415]
 gi|311099380|gb|EFQ57596.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Streptococcus downei F0415]
          Length = 242

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 59/136 (43%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T QGEG   G+  +F R  GC+             C +CD+ F      K   
Sbjct: 15  ILEIFGPTFQGEGRAIGQKTMFIRTGGCDY-----------HCDWCDSAFTWDGSEKATP 63

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
              DQ   +I E    G  +  Y  L+GG P LQ      L+  L  RG  +AVET G+ 
Sbjct: 64  MTSDQ---VIAELDKLGTYD--YVTLSGGNPCLQAANMEELVHKLKSRGVTLAVETQGSR 118

Query: 123 --EPPQGIDWICVSPK 136
             +    ID + +SPK
Sbjct: 119 WQDWLLDIDQVTLSPK 134


>gi|322418702|ref|YP_004197925.1| Radical SAM domain-containing protein [Geobacter sp. M18]
 gi|320125089|gb|ADW12649.1| Radical SAM domain protein [Geobacter sp. M18]
          Length = 250

 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 37/138 (26%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-------DFVGIQ 58
           + E F ++QGEG   G   VF RFSGCNL            C FCDT       D   ++
Sbjct: 8   LVECFSSIQGEGVLVGLRQVFLRFSGCNL-----------NCSFCDTPGMTAVPDECLLE 56

Query: 59  GTKGGR--------YNVDQLADLIEEQWITGEKEGRYCV-LTGGEP-----LLQVDVPLI 104
            T G R          ++++A LI E W        + + +TGGEP     LL+  +P++
Sbjct: 57  LTPGRRDFFKVPNPVTLERVATLI-ESWTAAWPGIHHSISVTGGEPLLFGTLLEEWLPVL 115

Query: 105 QALNKRGFEIAVETNGTI 122
               ++   I +ETNGT+
Sbjct: 116 ----RKFLPIYLETNGTL 129


>gi|269798253|ref|YP_003312153.1| radical SAM protein [Veillonella parvula DSM 2008]
 gi|269094882|gb|ACZ24873.1| Radical SAM domain protein [Veillonella parvula DSM 2008]
          Length = 247

 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 19/111 (17%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           ++ EIF ++ GEG   G +  F R   CN+           +C +CDT +     +    
Sbjct: 2   NVIEIFASIDGEGSRQGLLTTFLRLHDCNI-----------RCSYCDTTYSYGIDSVFTE 50

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFE 113
               ++A++IE              +TGGEPLLQ    V LI  LN+R  E
Sbjct: 51  MTAAEVANVIESLG------NHRITITGGEPLLQEAAVVELIDELNRRKAE 95


>gi|326774406|ref|ZP_08233671.1| Radical SAM domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|326654739|gb|EGE39585.1| Radical SAM domain protein [Streptomyces cf. griseus XylebKG-1]
          Length = 244

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 54/125 (43%), Gaps = 24/125 (19%)

Query: 6   IKEIFLTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           ++EIF  + QGEG   GR A F RF  CNL            C  CD+           R
Sbjct: 17  VQEIFGPVPQGEGPFMGRRACFVRFGRCNL-----------HCPPCDSKAT----WDSSR 61

Query: 65  YNVDQ------LADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVE 117
           Y++ Q      + D+ +     G   G   VLTGGEPL+ Q      Q L     EI VE
Sbjct: 62  YDLRQTCPPRTVEDIAQTAAAHGAGSG-ITVLTGGEPLMWQRSTAWAQLLQDLPGEIHVE 120

Query: 118 TNGTI 122
           TN TI
Sbjct: 121 TNATI 125


>gi|289192393|ref|YP_003458334.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938843|gb|ADC69598.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
          Length = 243

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 32/152 (21%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD----FVGIQGTK 61
           I+EIF ++ GEG + GR  +F RF+GC L            C +CD +    F  ++ T 
Sbjct: 2   IREIFSSIMGEGKYIGRRFIFVRFAGCPL-----------NCVYCDEESKGYFNRVEKTP 50

Query: 62  G-GRYNVDQLADLIEEQWITGEKEGRY-----CVLTGGEPLL---QVDVPLIQALNKRGF 112
           G G +   Q  D+  E  I    + +         TGGEPLL   Q+   +   L  +G+
Sbjct: 51  GSGEFETLQKIDI--EDIINAIDKLKTPDLFAVSFTGGEPLLYHKQIK-EISDILKDKGY 107

Query: 113 EIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144
              +E+NG    P+ + +  +   A  D+K+K
Sbjct: 108 RTFLESNGMF--PEKVFYFDI---ASIDIKLK 134


>gi|254446154|ref|ZP_05059630.1| radical SAM domain protein, putative [Verrucomicrobiae bacterium
           DG1235]
 gi|198260462|gb|EDY84770.1| radical SAM domain protein, putative [Verrucomicrobiae bacterium
           DG1235]
          Length = 208

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 18/118 (15%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           GR A F R  GC +            C +CD+      GT    Y    +  +  E    
Sbjct: 2   GRSAYFIRLFGCPV-----------HCPWCDS-----AGTWHPDYVPKNVERVTPEALAD 45

Query: 81  GEKE--GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPK 136
             K     + V+TGGEP++     L +AL  RG    +ET+G  E     DWI +SPK
Sbjct: 46  AAKASGAEFAVVTGGEPVIHDLKALSEALAARGIGRHLETSGGFEIRGDFDWITLSPK 103


>gi|256810231|ref|YP_003127600.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
 gi|256793431|gb|ACV24100.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
          Length = 243

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 26/149 (17%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---FVGIQGTKG 62
           IKEIF ++ GEG + GR  +F RF+GC L           +C +CD +   ++       
Sbjct: 2   IKEIFSSIMGEGKYIGRRFIFVRFAGCPL-----------KCIYCDEESKSYLNRVEKIP 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRY-----CVLTGGEPLLQVD--VPLIQALNKRGFEIA 115
           G    + L ++  E  +    + R         TGGEPLL       + + L  +G+   
Sbjct: 51  GSGEFETLKNMDVEDVVNAVDKLRTPDLFAVSFTGGEPLLYSKKIKEIAEILKDKGYRTF 110

Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIK 144
           +E+NG    P+ + +  +   A  D+K+K
Sbjct: 111 LESNGLF--PEKVFYFDI---ASIDIKLK 134


>gi|289167418|ref|YP_003445687.1| hypothetical protein smi_0570 [Streptococcus mitis B6]
 gi|288906985|emb|CBJ21819.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 238

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 21/136 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K  R
Sbjct: 11  VLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKPIR 59

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVP-LIQALNKRGFEIAVETNGTI 122
              D++   +++    G  +  Y  L+GG P +L  ++  L+  L +RG  +AVET G+ 
Sbjct: 60  MTADEVIAALDK---LGSYD--YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQGSR 114

Query: 123 EPP--QGIDWICVSPK 136
                + ID + +SPK
Sbjct: 115 WQNWLKDIDQVTLSPK 130


>gi|239826407|ref|YP_002949031.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. WCH70]
 gi|239806700|gb|ACS23765.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. WCH70]
          Length = 245

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 20/141 (14%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV--GIQ 58
           K   + EIF  T+QGEG   G+  +F R +GC+            +CR+CD+ F   G  
Sbjct: 5   KKIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSAFTWDGSA 53

Query: 59  GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVE 117
             +  +   +Q+ + + E    G     +  ++GG P L+Q    L+  L  +G  IAVE
Sbjct: 54  KEEIRQMTAEQIWERLYE---LGGDRFSHVTISGGNPVLIQALEELVVLLKNKGIRIAVE 110

Query: 118 TNGTI--EPPQGIDWICVSPK 136
           T G+   +    ID I +SPK
Sbjct: 111 TQGSRWQDWLYHIDDITISPK 131


>gi|320546946|ref|ZP_08041247.1| ExsD protein [Streptococcus equinus ATCC 9812]
 gi|320448348|gb|EFW89090.1| ExsD protein [Streptococcus equinus ATCC 9812]
          Length = 237

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 21/156 (13%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T QGEG   G+  +F R  GC+             C +CD+DF      K  R
Sbjct: 10  VLEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCAWCDSDFTWNGSEKPNR 58

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDV-PLIQALNKRGFEIAVETNGTI 122
              D+   +I E    G  +  Y  L+GG P LL   +  L+  L  RG  + +ET G+ 
Sbjct: 59  MTADE---IIAELDRLGTYD--YVTLSGGNPCLLGASMGELVTKLKARGVTLGIETQGSR 113

Query: 123 EPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156
                + ID + +SPK          + L  +  Q+
Sbjct: 114 WQTWLKDIDQVTLSPKPPSSKMTVNFETLDFIVSQL 149


>gi|172058910|ref|YP_001815370.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Exiguobacterium sibiricum 255-15]
 gi|171991431|gb|ACB62353.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Exiguobacterium sibiricum 255-15]
          Length = 238

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 18/118 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T QGEG   G+  +F R  GC+             C +CD+ F      K   
Sbjct: 12  VLEIFGPTFQGEGRSIGQKTMFVRTGGCDY-----------SCAWCDSAFTWDGSEKPDL 60

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
              D++   ++     G     +  ++GG PLL   +  L+ AL  RG  ++VET G+
Sbjct: 61  LTADEILAQLDALGSYG-----HVTISGGNPLLHASIGTLVDALKSRGITMSVETQGS 113


>gi|240103382|ref|YP_002959691.1| Radical SAM protein [Thermococcus gammatolerans EJ3]
 gi|239910936|gb|ACS33827.1| Radical SAM protein [Thermococcus gammatolerans EJ3]
          Length = 253

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 36/164 (21%)

Query: 1   MKLYSIKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DF 54
           MKL  + E+F + QGEGG       GR  +F RF+GC+L            C +CD+ ++
Sbjct: 1   MKLI-MAEVFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------NCAWCDSREY 48

Query: 55  VGIQGTKGGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100
           +        RY V+             +L D+++        +      TGGEP LQV  
Sbjct: 49  IDPSRVSRWRYEVEPFTAKFEYKPNPAELEDVVDAVLRLDTGDIHSISYTGGEPTLQVKP 108

Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDWIC-VSPKAGCDLK 142
              L++ +   GF+  +ET+G +  P+ I+ +  ++  A  D+K
Sbjct: 109 LKALMERMKSLGFDNFLETHGGL--PELIEEVAPLTDYASVDIK 150


>gi|332179391|gb|AEE15080.1| Radical SAM domain protein [Thermodesulfobium narugense DSM 14796]
          Length = 216

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 26/134 (19%)

Query: 3   LYSIKEIFLTLQGEGGHA--GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQG 59
           + +I  IF ++ GE G    G      R  GCNL           +CR+CDT D   I+ 
Sbjct: 1   MIAIHSIFESISGEVGFMPQGSWCTIVRLQGCNL-----------RCRWCDTKDSQSIEA 49

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
                 ++D++ D  +   +         ++TGGEPL+Q + + LI  L +R   + +ET
Sbjct: 50  KY--MLSIDEVIDRCKNHKV---------LITGGEPLIQEETLKLIDRLIERHHFVQIET 98

Query: 119 NGTIEPPQGIDWIC 132
           NG+I  P G    C
Sbjct: 99  NGSIFLPSGYSSDC 112


>gi|306842891|ref|ZP_07475527.1| Radical SAM domain protein [Brucella sp. BO2]
 gi|306286914|gb|EFM58434.1| Radical SAM domain protein [Brucella sp. BO2]
          Length = 248

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++      
Sbjct: 14  ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 61

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +    +  +  E     +K      L+GG P +Q   PLI+     G+  A+ET G++  
Sbjct: 62  WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLAPLIEHGKAEGYRFALETQGSVAK 121

Query: 125 P--QGIDWICVSPK 136
                +D + +SPK
Sbjct: 122 DWFSRLDTLVLSPK 135


>gi|297584920|ref|YP_003700700.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus selenitireducens MLS10]
 gi|297143377|gb|ADI00135.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus selenitireducens MLS10]
          Length = 243

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 24/139 (17%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV--GIQGTKG 62
           + EIF  T+QGEG  AGR  +F R +GC+             C +CD+ F   G    + 
Sbjct: 7   VLEIFGPTIQGEGMVAGRKTMFVRTAGCDY-----------ACSWCDSAFTWDGSAKDEI 55

Query: 63  GRYNVDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
            + N D +   + E     E EG   +  ++GG P L  ++   I  L ++  ++A+ET 
Sbjct: 56  VQMNKDAIWQALNE-----EAEGLFSHVTISGGNPALLKNLGSFITLLKEKAIDVALETQ 110

Query: 120 GTI--EPPQGIDWICVSPK 136
           G++  +    ID + +SPK
Sbjct: 111 GSVWQDWFTTIDDLTISPK 129


>gi|256823062|ref|YP_003147025.1| Radical SAM domain-containing protein [Kangiella koreensis DSM
           16069]
 gi|256796601|gb|ACV27257.1| Radical SAM domain protein [Kangiella koreensis DSM 16069]
          Length = 213

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 21/122 (17%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    I EIF +LQGE    G   VF R +GC L           +C +CDTD+    G 
Sbjct: 1   MSKLRITEIFHSLQGESLTVGVPTVFVRLTGCPL-----------RCVYCDTDY-AFGGG 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
           +  R+  + LA++        +    +  +TGGEPL Q  V    + L   G++++ ET 
Sbjct: 49  EWMRFE-EILAEI-------KQYGCEHVCITGGEPLAQKRVFEFFKLLGDEGYKVSTETG 100

Query: 120 GT 121
           G 
Sbjct: 101 GA 102


>gi|75906966|ref|YP_321262.1| radical SAM family protein [Anabaena variabilis ATCC 29413]
 gi|75700691|gb|ABA20367.1| Radical SAM [Anabaena variabilis ATCC 29413]
          Length = 264

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 40/162 (24%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-------GIQ 58
           + E+F  +QGEG + G   +F RF+ C+L           +C FCD+           I+
Sbjct: 13  LVEVFSAIQGEGLNVGTRQIFIRFAFCDL-----------RCHFCDSAHTWNAPASCRIE 61

Query: 59  GTKGGR-----YNVDQLADLIEEQWITGEKEGRYCV-----LTGGEPLLQVD-----VPL 103
            + G R      N   L  LIE  W+  E++   C+     LTGGEPLL        +P 
Sbjct: 62  RSPGLRDFESHPNPVPLTTLIE--WV--ERQNLPCLHDSISLTGGEPLLHAPFLQEFLPK 117

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
           +++L   G  I +ET G   P Q    +      G DLK+  
Sbjct: 118 VRSLT--GLPIYLETGGH-RPEQLATILPYLDSVGMDLKLPS 156


>gi|224372460|ref|YP_002606832.1| radical SAM domain protein [Nautilia profundicola AmH]
 gi|223589672|gb|ACM93408.1| radical SAM domain protein [Nautilia profundicola AmH]
          Length = 233

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 27/131 (20%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC-----RFCDTDFVG 56
           KL  + EIF ++QGEG +AG  +VF R  GCNL           +C     + CD+ +  
Sbjct: 5   KLIPVSEIFYSIQGEGKYAGHPSVFVRVGGCNL-----------KCPGFGEKGCDS-YYA 52

Query: 57  IQGTKGGRYNVDQLADLIEE--QWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGF 112
           +  +    + +  + ++  E  ++I   ++  + V+TGGEP L      PL+        
Sbjct: 53  VDKSYKSEWKLMSVEEIKSEVSKYI---RKDTHLVITGGEPTLFYKQLYPLVVWFEG--- 106

Query: 113 EIAVETNGTIE 123
           +I VETN T++
Sbjct: 107 QITVETNTTVD 117


>gi|310640608|ref|YP_003945366.1| coenzyme pqq synthesis-like protein [Paenibacillus polymyxa SC2]
 gi|309245558|gb|ADO55125.1| Coenzyme PQQ synthesis-like protein [Paenibacillus polymyxa SC2]
          Length = 265

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 16/135 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + E+F  T+QGEG   GR  +F R +GC+             C +CD+ F    G+   +
Sbjct: 29  VLEVFGPTVQGEGMVIGRKTMFVRTAGCDY-----------HCSWCDSAFTW-DGSAKDQ 76

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI- 122
                  D+ +E    G +   +  L+GG P L   +  LI  L  +G   AVET G+  
Sbjct: 77  IRRLSATDIWQELKSIGGERFSHVTLSGGNPALLPQLGALITLLRSQGIATAVETQGSRW 136

Query: 123 -EPPQGIDWICVSPK 136
            E    ID + +SPK
Sbjct: 137 QEWLYDIDEVTLSPK 151


>gi|238926278|ref|ZP_04658038.1| radical SAM domain protein [Selenomonas flueggei ATCC 43531]
 gi|238885958|gb|EEQ49596.1| radical SAM domain protein [Selenomonas flueggei ATCC 43531]
          Length = 248

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 70/174 (40%), Gaps = 46/174 (26%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK--- 61
           +I EIF ++QGEG + G   VF R  GCNL            C +CDTD     GT    
Sbjct: 9   NIIEIFSSIQGEGKYVGCRQVFLRLEGCNL-----------NCTYCDTD--SKAGTHPNC 55

Query: 62  -----GGRYNVDQLADLIEEQWITGEK-------EGRYCVLTGGEPLLQVDVPLIQALNK 109
                 G Y++    + I  +               +   +TGGEPLL      I+AL  
Sbjct: 56  VVEEGAGTYHLVPYPNPISPERAAELVALAAAGVPHQALSITGGEPLLHAS--FIRALAP 113

Query: 110 R-GFEIAVETNGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP 160
                I +ETNGT+  E  + ID  CV   AG  + IK         P V   P
Sbjct: 114 HVHLPIYLETNGTLYAELKKCID--CV---AGISMDIK--------LPSVTAHP 154


>gi|17231653|ref|NP_488201.1| hypothetical protein alr4161 [Nostoc sp. PCC 7120]
 gi|17133296|dbj|BAB75860.1| alr4161 [Nostoc sp. PCC 7120]
          Length = 264

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 40/162 (24%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-------GIQ 58
           + E+F  +QGEG + G   +F RF+ C+L           +C FCD+           I+
Sbjct: 13  LVEVFSAIQGEGLNVGTRQIFIRFAFCDL-----------RCHFCDSAHTWNAPASCRIE 61

Query: 59  GTKGGR-----YNVDQLADLIEEQWITGEKEGRYCV-----LTGGEPLLQVD-----VPL 103
            + G R      N   L  LIE  W+  E++   C+     LTGGEPLL        +P 
Sbjct: 62  RSPGLRDFESHPNPVPLTTLIE--WV--ERQNLPCLHDSISLTGGEPLLHAPFLQEFLPK 117

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
           +++L   G  I +ET G   P Q    +      G DLK+  
Sbjct: 118 VRSLT--GLPIYLETGGH-RPEQLATILPYLDSVGMDLKLPS 156


>gi|239832976|ref|ZP_04681305.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Ochrobactrum intermedium LMG 3301]
 gi|239825243|gb|EEQ96811.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Ochrobactrum intermedium LMG 3301]
          Length = 246

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 19/136 (13%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++      
Sbjct: 12  IAEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 59

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +    +  + +E       +     L+GG P +Q   PLI+   K G+  A+ET G++  
Sbjct: 60  WKTMSVEAIWDEVTALSRNKPLTVSLSGGNPAIQPLGPLIEHGRKHGYRFALETQGSVV- 118

Query: 125 PQG----IDWICVSPK 136
            QG    +D + +SPK
Sbjct: 119 -QGWFSALDTLVLSPK 133


>gi|57641133|ref|YP_183611.1| organic radical activating protein [Thermococcus kodakarensis KOD1]
 gi|57159457|dbj|BAD85387.1| organic radical activating enzyme, radical SAM superfamily
           [Thermococcus kodakarensis KOD1]
          Length = 253

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 33/158 (20%)

Query: 6   IKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQG 59
           + E+F + QGEGG       GR  +F RF+GC+L            C +CD+ +++    
Sbjct: 5   MAEVFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------HCAWCDSREYIDASR 53

Query: 60  TKGGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLI 104
               RY V               + +++E        +      TGGEP LQV   + L+
Sbjct: 54  VSSWRYEVKPFTGRFEYRPNPASVEEVVEAVLRLDTGDIHSISYTGGEPTLQVKPLMALM 113

Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
           + + + GF+  +ET+G + P    D   ++  A  D+K
Sbjct: 114 ERMKELGFDNFLETHGGL-PELIRDVAPLTDYASVDIK 150


>gi|288556797|ref|YP_003428732.1| hypothetical protein BpOF4_19005 [Bacillus pseudofirmus OF4]
 gi|288547957|gb|ADC51840.1| hypothetical protein BpOF4_19005 [Bacillus pseudofirmus OF4]
          Length = 236

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 18/140 (12%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           MK   + EIF  T+QGEG   G+  +F R  GC+            +C +CD+ F    G
Sbjct: 1   MKKIPVMEIFGPTIQGEGMVIGQKTMFVRTGGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118
           T  G+ N+    ++I++    G     +  ++GG P +   +  L+  L   G + AVET
Sbjct: 49  T--GKSNLMTAEEIIKQLKEIGGDRFSHVTISGGNPAIHQGIGKLVSFLKSLGIKTAVET 106

Query: 119 NGTI--EPPQGIDWICVSPK 136
            G++  E    +  + +SPK
Sbjct: 107 QGSLWQEWMMEVSDVTISPK 126


>gi|282163368|ref|YP_003355753.1| hypothetical protein MCP_0698 [Methanocella paludicola SANAE]
 gi|282155682|dbj|BAI60770.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 243

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 25/131 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT--DFVGIQG---- 59
           I+EIF++ QGEG + G   +F RF  CNL           +C++CDT  D+         
Sbjct: 5   IREIFVSAQGEGPYVGYRQLFVRFPKCNL-----------ECQYCDTPKDWSSESKCRVE 53

Query: 60  TKGGRYNVDQLADLIEEQWITGEK--EGRYCV-LTGGEPLLQVDVPLIQALNKRGFEIAV 116
           +K G + V+       E  ++  K  E  + V LTGGEPLL      I+ L    F + +
Sbjct: 54  SKPGEF-VEYDNPFSSEHLLSVIKLYERIHSVSLTGGEPLLYAK--FIKELKTSKFPLYL 110

Query: 117 ETNGTIEPPQG 127
           E+N T+  P+G
Sbjct: 111 ESNMTL--PEG 119


>gi|308067859|ref|YP_003869464.1| Organic radical activating enzyme [Paenibacillus polymyxa E681]
 gi|305857138|gb|ADM68926.1| Organic radical activating enzyme [Paenibacillus polymyxa E681]
          Length = 287

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 16/135 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + E+F  T+QGEG   GR  +F R +GC+             C +CD+ F    G+   +
Sbjct: 24  VLEVFGPTVQGEGMVIGRKTMFVRTAGCDY-----------HCSWCDSAFTW-DGSAKDQ 71

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI- 122
                  D+ +E    G +   +  L+GG P L   +  LI  L  +G   AVET G+  
Sbjct: 72  IRRLSATDIWQELKAIGGERFSHVTLSGGNPALLPQLGELITLLRSQGIATAVETQGSRW 131

Query: 123 -EPPQGIDWICVSPK 136
            E    ID + +SPK
Sbjct: 132 QEWLYDIDEVTLSPK 146


>gi|327400839|ref|YP_004341678.1| Radical SAM domain-containing protein [Archaeoglobus veneficus
           SNP6]
 gi|327316347|gb|AEA46963.1| Radical SAM domain protein [Archaeoglobus veneficus SNP6]
          Length = 238

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 102/250 (40%), Gaps = 71/250 (28%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I+EIF ++QGEG   G   +F RF+ CNL            C +CDT       T     
Sbjct: 14  IREIFESIQGEGILVGVRQLFVRFARCNL-----------NCIYCDTPTDSTDCT--NHI 60

Query: 66  NVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQVDVPLIQALNK-RGFEIAVETNGTI 122
             ++L + +  ++++   ++      LTGGEPLL  D   I +L K R F   +ETN ++
Sbjct: 61  TGEKLPNPVSREYVSEFFDRNVHSICLTGGEPLLYAD--FIASLPKTRPF--YLETNMSL 116

Query: 123 EPPQGIDWICVSPKAGCDLKIK-----GGQEL---------------------KLVFPQ- 155
            P        V   AG D K++     G +EL                     K V P+ 
Sbjct: 117 -PEMAKKLTHVDFVAG-DFKVREAIVDGYEELVENTVRCFRILRNREDRLTFCKFVLPER 174

Query: 156 ------VN--VSPENYIGFDFERFSLQPMDG-------PFLEENTNLAISYCFQNPKWRL 200
                 +N  +S ENY+    E F LQP+ G         LE    L    C      R+
Sbjct: 175 FDAEEVINNAISVENYV----ECFILQPVFGTSKRGIETILELQKVLMEKVCVD---VRV 227

Query: 201 SVQTHKFIGI 210
             Q HK++G+
Sbjct: 228 IPQVHKYLGV 237


>gi|229917714|ref|YP_002886360.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Exiguobacterium sp. AT1b]
 gi|229469143|gb|ACQ70915.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Exiguobacterium sp. AT1b]
          Length = 236

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 20/135 (14%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + E+F  T QGEG   G+  +F R +GC+            +C +CD+ F      K   
Sbjct: 10  VLEVFGPTFQGEGRAIGQKTMFVRTAGCDY-----------RCSWCDSAFTWDGSEKPDM 58

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI- 122
              D++   ++   +       Y  ++GG PLL   +  L+  L KRG  +AVET G+  
Sbjct: 59  LTADEVIARLDALGMYD-----YVTISGGNPLLIAAMEDLVVKLKKRGVTLAVETQGSRY 113

Query: 123 -EPPQGIDWICVSPK 136
            +    ID + +SPK
Sbjct: 114 QDWLTQIDDVTLSPK 128


>gi|116253993|ref|YP_769831.1| hypothetical protein RL4256 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258641|emb|CAK09745.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 247

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 41/147 (27%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G   VF R  GC+            +C +CD+            
Sbjct: 8   VSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDS------------ 44

Query: 65  YNVDQLADLIEEQWITGEKEGRY-------------CVLTGGEPLLQVDVPLIQALNKRG 111
             +  +     +QWI    E  +               L+GG P +Q   PLI+  + +G
Sbjct: 45  --LHAVESAFRDQWIPMSTEAVWHKVTELSGGKPLTVSLSGGNPAIQPLRPLIELGHSQG 102

Query: 112 FEIAVETNGTIEPP--QGIDWICVSPK 136
           +  A+ET G++     + +D + +SPK
Sbjct: 103 YRFALETQGSVAQAWFRDLDTLVISPK 129


>gi|15669841|ref|NP_248655.1| coenzyme PQQ synthesis protein III [Methanocaldococcus jannaschii
           DSM 2661]
 gi|41688758|sp|Q59039|Y1645_METJA RecName: Full=Uncharacterized protein MJ1645
 gi|1592229|gb|AAB99666.1| coenzyme PQQ synthesis protein III isolog (Haemophilus influenzae}
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 243

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 28/150 (18%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD----FVGIQGTK 61
           I+EIF ++ GEG + GR  +F RF+GC L            C +CD +    F  ++   
Sbjct: 2   IREIFNSIMGEGKYIGRRFIFVRFAGCPL-----------NCVYCDEESKGYFNRVEKIP 50

Query: 62  G-GRYNVDQ---LADLIEEQWITGEKEGRYCVLTGGEPLL---QVDVPLIQALNKRGFEI 114
           G G +   Q   + D+I         +      TGGEPLL   Q+   + + L  +G+  
Sbjct: 51  GSGEFETLQKMEIEDIINAIDKLKTPDLFAVSFTGGEPLLYHKQIK-EIAEILKDKGYRT 109

Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIK 144
            +E+NG    P+ I +  +   A  D+K+K
Sbjct: 110 FLESNGMF--PERIFYFDI---ASIDIKLK 134


>gi|323438941|gb|EGA96676.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus O11]
 gi|323441590|gb|EGA99239.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus O46]
          Length = 237

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 85/212 (40%), Gaps = 24/212 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118
           +  G   +    ++ +E    G     +  ++GG P L   +  L+     +G   A+ET
Sbjct: 49  SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108

Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY--IGFDFERFSLQ 174
            G+   P    ID + +SPK          ++L  V  Q   S  N   + FD + +   
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVIAQCAPSSLNLKVVVFDDKDYDFA 168

Query: 175 PM------DGPFLEENTNLAISYCFQNPKWRL 200
            M      D PF  +  N  +S    N   +L
Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDNHTEKL 200


>gi|18977649|ref|NP_579006.1| hypothetical protein PF1277 [Pyrococcus furiosus DSM 3638]
 gi|18893373|gb|AAL81401.1| hypothetical protein PF1277 [Pyrococcus furiosus DSM 3638]
          Length = 254

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 32/134 (23%)

Query: 8   EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTK 61
           EIF + QGEGG       GR  +F RF+GC+L           +C +CD+  ++  +  K
Sbjct: 8   EIFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------RCTYCDSRKYIDPRSVK 56

Query: 62  GGRYNVDQLADL---------IEE--QWITGEKEG--RYCVLTGGEPLLQV--DVPLIQA 106
             R  V+  +           +EE  +WIT    G       TGGEP LQ+     L++ 
Sbjct: 57  KYRVEVEPFSGKFKYFNNPVDVEEVIKWITKLDTGDIHSISYTGGEPTLQILGLASLMEK 116

Query: 107 LNKRGFEIAVETNG 120
             + G++  +ET+G
Sbjct: 117 AKELGYDNFLETHG 130


>gi|6066247|gb|AAF03232.1|AF156097_12 ORF12 [Pyrococcus furiosus]
          Length = 218

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 32/134 (23%)

Query: 8   EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTK 61
           EIF + QGEGG       GR  +F RF+GC+L           +C +CD+  ++  +  K
Sbjct: 8   EIFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------RCTYCDSRKYIDPRSVK 56

Query: 62  GGRYNVDQLADL---------IEE--QWITGEKEG--RYCVLTGGEPLLQV--DVPLIQA 106
             R  V+  +           +EE  +WIT    G       TGGEP LQ+     L++ 
Sbjct: 57  KYRVEVEPFSGKFKYFNNPVDVEEVIKWITKLDTGDIHSISYTGGEPTLQILGLASLMEK 116

Query: 107 LNKRGFEIAVETNG 120
             + G++  +ET+G
Sbjct: 117 AKELGYDNFLETHG 130


>gi|270157549|ref|ZP_06186206.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|289164069|ref|YP_003454207.1| hypothetical protein LLO_0725 [Legionella longbeachae NSW150]
 gi|269989574|gb|EEZ95828.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|288857242|emb|CBJ11067.1| hypothetical protein LLO_0725 [Legionella longbeachae NSW150]
          Length = 291

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 52/123 (42%), Gaps = 25/123 (20%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
           F TLQGEG   G  A F R + CNL            C FCDT F    G      ++ +
Sbjct: 27  FFTLQGEGPFRGHPAYFIRLAKCNL-----------ACSFCDTYFDS--GEWRNFTSLLE 73

Query: 70  LADLIEE-----------QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-IAVE 117
            AD + E            W  G  +    V+TGGEP LQ ++     + +  F+   +E
Sbjct: 74  EADQVIEDFFKNRNLPPPSWAQGLTKKMVLVITGGEPSLQQNLSAFLDIAQPYFQSTQIE 133

Query: 118 TNG 120
           +NG
Sbjct: 134 SNG 136


>gi|115378070|ref|ZP_01465248.1| radical activating enzyme [Stigmatella aurantiaca DW4/3-1]
 gi|115364909|gb|EAU63966.1| radical activating enzyme [Stigmatella aurantiaca DW4/3-1]
          Length = 194

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 21/99 (21%)

Query: 26  FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F R +GC+L           +C +CD++F    GT+     V +    +    +      
Sbjct: 5   FVRLTGCHL-----------RCTYCDSEFAFRGGTRMPNAQVVEQVKALRTPMVE----- 48

Query: 86  RYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
               +TGGEPLLQ  V PL++AL   G  + +ET+G I+
Sbjct: 49  ----ITGGEPLLQPGVYPLMEALLAEGLTVLLETSGAID 83


>gi|99081885|ref|YP_614039.1| radical SAM family protein [Ruegeria sp. TM1040]
 gi|99038165|gb|ABF64777.1| Radical SAM [Ruegeria sp. TM1040]
          Length = 235

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+        +   
Sbjct: 5   IAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDSLHAVDSAHRHSW 53

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
             ++  A   E + ++G++      L+GG P +Q   PLI      G+  A ET G+I  
Sbjct: 54  AAMETEAVWQEVRRLSGDQP-LTVSLSGGNPAIQDFGPLIARGKAAGYRFACETQGSIPR 112

Query: 125 P--QGIDWICVSPK 136
           P    ++ + +SPK
Sbjct: 113 PWFSDLETLVLSPK 126


>gi|213422189|ref|ZP_03355255.1| hypothetical protein Salmonentericaenterica_32418 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 109

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 13/95 (13%)

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +  K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL   L K GF   +E
Sbjct: 19  ESDKWGAASSEDLLAVINRQGYTA----RHVVITGGEPCIHDLMPLTDLLEKSGFSCQIE 74

Query: 118 TNGTIE---PPQGIDWICVSPKAGCDLKIKGGQEL 149
           T+GT E    P    W+ VSPK    + ++GG ++
Sbjct: 75  TSGTHEVRCTPN--TWVTVSPK----VNMRGGYDV 103


>gi|283470004|emb|CAQ49215.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 237

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 85/212 (40%), Gaps = 24/212 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118
           +  G   +    ++ +E    G     +  ++GG P L   +  L+     +G   A+ET
Sbjct: 49  SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108

Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY--IGFDFERFSLQ 174
            G+   P    ID + +SPK          ++L  V  Q   S  N   + FD + +   
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVIAQCVPSSLNLKVVVFDDKDYDFA 168

Query: 175 PM------DGPFLEENTNLAISYCFQNPKWRL 200
            M      D PF  +  N  +S    N   +L
Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDNHTEKL 200


>gi|253701563|ref|YP_003022752.1| radical SAM protein [Geobacter sp. M21]
 gi|251776413|gb|ACT18994.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 251

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 37/138 (26%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-------IQ 58
           + E F ++QGEG   G   VF R +GCNL            C FCDT  +        ++
Sbjct: 9   LVECFSSIQGEGVLVGLRQVFLRLAGCNL-----------NCSFCDTPGMSETPKECLLE 57

Query: 59  GTKGGR--------YNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVD-----VPLI 104
            T G R          ++++A L+ E W  G     + + +TGGEPLL        +P++
Sbjct: 58  LTPGRRDFFRVPNPVGLERVATLL-ESWTAGWPGIHHSISVTGGEPLLYAAELKEWLPVL 116

Query: 105 QALNKRGFEIAVETNGTI 122
           + L      + +ETNGT+
Sbjct: 117 RTL----LPVYLETNGTL 130


>gi|147921309|ref|YP_684877.1| hypothetical protein RCIX33 [uncultured methanogenic archaeon RC-I]
 gi|110620273|emb|CAJ35551.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 245

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 63/155 (40%), Gaps = 24/155 (15%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           ++EIF+++QGEG + G    F RF  CNL           +C +CDT        K    
Sbjct: 5   VREIFVSVQGEGPYVGYRQAFVRFPKCNL-----------ECLYCDTAKDWDSNKKCMVE 53

Query: 66  NVDQLADLIEEQ--------WITGEKEGRY--CVLTGGEPLLQVDVPLIQALNKRGFEIA 115
                 D  EE+            E++ +     LTGGEPLL      I+ L    + + 
Sbjct: 54  KTPGSGDFAEEENPITPGRLLTIAERDPKIHSISLTGGEPLLYGS--FIKELKGAKYPLY 111

Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
           +ETN T+ P    D   V      D K+K   + K
Sbjct: 112 LETNMTL-PEGAKDVKDVVKIVSGDFKLKAHCDFK 145


>gi|22298438|ref|NP_681685.1| hypothetical protein tll0895 [Thermosynechococcus elongatus BP-1]
 gi|22294618|dbj|BAC08447.1| tll0895 [Thermosynechococcus elongatus BP-1]
          Length = 301

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 101/262 (38%), Gaps = 74/262 (28%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---FVG----IQGT 60
           EIF  +QGEG + G   +F R +GC+L           +C +CD+    FV     I+  
Sbjct: 56  EIFSAIQGEGANVGCRQIFIRLAGCDL-----------RCTYCDSAHTWFVPSHALIEKQ 104

Query: 61  KGGRY-----NVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQVD-----VPLIQALNK 109
            G R+     N    A ++E  Q +          LTGGEPLL        +PL++A   
Sbjct: 105 TGDRHFQTVPNPVSAAHILEAVQRLNTPPIHDSISLTGGEPLLHAATLARFLPLLKA--H 162

Query: 110 RGFEIAVETNGTIEPPQGIDWIC-VSPKAGCDLKIKG----------GQELKL------- 151
               + +ET G    P+ +  I       G D+K+            G  L+L       
Sbjct: 163 SSLPLYLETGG--HHPEALQLILPYLDSVGMDIKLPSVSGECHWSAHGVFLRLCDRAPVE 220

Query: 152 VFPQVNVSPENYIGFDFERF-----SLQPMDGPFLEENTNLAISYCFQNP------KW-- 198
           VF +V VS       D +R      S+ P    FL+  T +    C   P      KW  
Sbjct: 221 VFCKVIVS-RTTDPADLDRLSALVASVNPHIPIFLQPVTPVGTGRCTPPPTPDQVLKWQG 279

Query: 199 ---------RLSVQTHKFIGIR 211
                    R+  QTHKF+G R
Sbjct: 280 QLKTRLTHVRVVPQTHKFLGQR 301


>gi|49482966|ref|YP_040190.1| radical activating enzyme [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257424829|ref|ZP_05601256.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257427497|ref|ZP_05603896.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257430128|ref|ZP_05606512.1| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257432830|ref|ZP_05609190.1| coenzyme PQQ synthesis [Staphylococcus aureus subsp. aureus E1410]
 gi|257435734|ref|ZP_05611782.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus M876]
 gi|282903337|ref|ZP_06311228.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905117|ref|ZP_06312975.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908094|ref|ZP_06315925.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910354|ref|ZP_06318158.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282913547|ref|ZP_06321336.1| ExsD protein [Staphylococcus aureus subsp. aureus M899]
 gi|282916048|ref|ZP_06323811.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus D139]
 gi|282918500|ref|ZP_06326237.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus C427]
 gi|282923465|ref|ZP_06331145.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus C101]
 gi|283769872|ref|ZP_06342764.1| queuosine biosynthesis protein QueE [Staphylococcus aureus subsp.
           aureus H19]
 gi|283957539|ref|ZP_06374992.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293500594|ref|ZP_06666445.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293509540|ref|ZP_06668251.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus M809]
 gi|293524126|ref|ZP_06670813.1| ExsD protein [Staphylococcus aureus subsp. aureus M1015]
 gi|295427286|ref|ZP_06819921.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297590363|ref|ZP_06949002.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus MN8]
 gi|49241095|emb|CAG39773.1| putative radical activating enzyme [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257272399|gb|EEV04522.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257275690|gb|EEV07163.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257279325|gb|EEV09926.1| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257282245|gb|EEV12380.1| coenzyme PQQ synthesis [Staphylococcus aureus subsp. aureus E1410]
 gi|257284925|gb|EEV15044.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus M876]
 gi|282314333|gb|EFB44723.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus C101]
 gi|282317634|gb|EFB48006.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus C427]
 gi|282319996|gb|EFB50343.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus D139]
 gi|282322579|gb|EFB52901.1| ExsD protein [Staphylococcus aureus subsp. aureus M899]
 gi|282325746|gb|EFB56054.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327759|gb|EFB58041.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331942|gb|EFB61453.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282596292|gb|EFC01253.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus C160]
 gi|283460019|gb|EFC07109.1| queuosine biosynthesis protein QueE [Staphylococcus aureus subsp.
           aureus H19]
 gi|283790990|gb|EFC29805.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290921089|gb|EFD98150.1| ExsD protein [Staphylococcus aureus subsp. aureus M1015]
 gi|291095599|gb|EFE25860.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291467637|gb|EFF10152.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus M809]
 gi|295128674|gb|EFG58305.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297576662|gb|EFH95377.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312438868|gb|ADQ77939.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315194326|gb|EFU24718.1| putative radical activating enzyme [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 237

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 85/212 (40%), Gaps = 24/212 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118
           +  G   +    ++ +E    G     +  ++GG P L   +  L+     +G   A+ET
Sbjct: 49  SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108

Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY--IGFDFERFSLQ 174
            G+   P    ID + +SPK          ++L  V  Q   S  N   + FD + +   
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVIAQCVPSSLNLKVVVFDDKDYDFA 168

Query: 175 PM------DGPFLEENTNLAISYCFQNPKWRL 200
            M      D PF  +  N  +S    N   +L
Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDNHTEKL 200


>gi|259419192|ref|ZP_05743109.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Silicibacter sp. TrichCH4B]
 gi|259345414|gb|EEW57268.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Silicibacter sp. TrichCH4B]
          Length = 235

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+        +   
Sbjct: 5   IAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDSLHAVESQYRHSW 53

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
             +D  A   +   ++G +      L+GG P +Q   PLI      G+  A ET G+I  
Sbjct: 54  APMDTDAVWAKVHKLSGGQP-LTVSLSGGNPAIQDFGPLITKGRAAGYRFACETQGSIPR 112

Query: 125 P--QGIDWICVSPK 136
           P    +D + +SPK
Sbjct: 113 PWFADLDTLVLSPK 126


>gi|327189839|gb|EGE56977.1| organic-radical-activating protein [Rhizobium etli CNPAF512]
          Length = 242

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 41/147 (27%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G   VF R  GC+            +C +CD+            
Sbjct: 8   VSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDS------------ 44

Query: 65  YNVDQLADLIEEQWITGEKEGRY-------------CVLTGGEPLLQVDVPLIQALNKRG 111
             +  +     EQWI    E  +               L+GG P +Q   PLI+  + +G
Sbjct: 45  --LHAVDSAFREQWIPMSTEAIWQEVTKLSAGRPMTVSLSGGNPAIQPLGPLIEFGHSQG 102

Query: 112 FEIAVETNGTIEPP--QGIDWICVSPK 136
           +  A+ET G+I     + +D + +SPK
Sbjct: 103 YRFALETQGSIARNWFRDLDVLVLSPK 129


>gi|209551071|ref|YP_002282988.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209536827|gb|ACI56762.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 242

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 23/138 (16%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+    +       
Sbjct: 8   ISEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDS----LHAVDSA- 51

Query: 65  YNVDQLADLIEEQW--ITGEKEGR--YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           +    L   +E  W  +T    GR     L+GG P +Q   PLI+  + +G+  A+ET G
Sbjct: 52  FRDQWLPMSVEAVWQQVTKLSGGRPLTVSLSGGNPAIQPLGPLIEFGHSQGYRFALETQG 111

Query: 121 TIEPP--QGIDWICVSPK 136
           ++     + +D + +SPK
Sbjct: 112 SVARDWFRDLDMLVLSPK 129


>gi|82750412|ref|YP_416153.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus RF122]
 gi|82655943|emb|CAI80347.1| coenzyme PQQ synthesis homolog [Staphylococcus aureus RF122]
          Length = 237

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 85/212 (40%), Gaps = 24/212 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118
           +  G   +    ++ +E    G     +  ++GG P L   +  L+     +G   A+ET
Sbjct: 49  SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108

Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY--IGFDFERFSLQ 174
            G+   P    ID + +SPK          ++L  V  Q   S  N   + FD + +   
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVITQCVPSSLNLKVVVFDDKDYDFA 168

Query: 175 PM------DGPFLEENTNLAISYCFQNPKWRL 200
            M      D PF  +  N  +S    N   +L
Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDNHTEKL 200


>gi|15923700|ref|NP_371234.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15926387|ref|NP_373920.1| hypothetical protein SA0665 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282401|ref|NP_645489.1| hypothetical protein MW0672 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485582|ref|YP_042803.1| putative radical activating enzyme [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57651549|ref|YP_185647.1| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus COL]
 gi|87162096|ref|YP_493398.1| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88194484|ref|YP_499278.1| hypothetical protein SAOUHSC_00719 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148267170|ref|YP_001246113.1| radical SAM domain-containing protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393218|ref|YP_001315893.1| radical SAM domain-containing protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151220891|ref|YP_001331713.1| hypothetical protein NWMN_0679 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156979038|ref|YP_001441297.1| coenzyme PQQ synthesis homologue [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|161508974|ref|YP_001574633.1| organic radical-activating protein [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221140926|ref|ZP_03565419.1| organic radical-activating protein [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253315349|ref|ZP_04838562.1| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|253731333|ref|ZP_04865498.1| organic radical-activating protein [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253732846|ref|ZP_04867011.1| organic radical-activating protein [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|255005502|ref|ZP_05144103.2| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257794969|ref|ZP_05643948.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus A9781]
 gi|258418286|ref|ZP_05682551.1| radical activating enzyme family protein [Staphylococcus aureus
           A9763]
 gi|258421583|ref|ZP_05684508.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus A9719]
 gi|258430776|ref|ZP_05688488.1| radical activating enzyme family protein [Staphylococcus aureus
           A9299]
 gi|258441731|ref|ZP_05691003.1| coenzyme PQQ synthesis [Staphylococcus aureus A8115]
 gi|258445827|ref|ZP_05694004.1| radical activating enzyme family protein [Staphylococcus aureus
           A6300]
 gi|258449638|ref|ZP_05697740.1| radical activating enzyme family protein [Staphylococcus aureus
           A6224]
 gi|258452918|ref|ZP_05700912.1| radical activating enzyme family protein [Staphylococcus aureus
           A5948]
 gi|258454039|ref|ZP_05702011.1| radical activating enzyme family protein [Staphylococcus aureus
           A5937]
 gi|262048445|ref|ZP_06021330.1| hypothetical protein SAD30_2172 [Staphylococcus aureus D30]
 gi|262052792|ref|ZP_06024980.1| hypothetical protein SA930_0349 [Staphylococcus aureus 930918-3]
 gi|269202330|ref|YP_003281599.1| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282894475|ref|ZP_06302704.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus A8117]
 gi|282922002|ref|ZP_06329699.1| 7-cyano-7-deazaguanosine (preQ) biosynthesis protein QueE
           [Staphylococcus aureus A9765]
 gi|282926573|ref|ZP_06334203.1| 7-cyano-7-deazaguanosine (preQ) biosynthesis protein QueE
           [Staphylococcus aureus A10102]
 gi|294849379|ref|ZP_06790122.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus A9754]
 gi|295406428|ref|ZP_06816234.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus A8819]
 gi|296274774|ref|ZP_06857281.1| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297208566|ref|ZP_06924995.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297245155|ref|ZP_06929029.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus A8796]
 gi|300912658|ref|ZP_07130101.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304381675|ref|ZP_07364324.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|13700601|dbj|BAB41898.1| SA0665 [Staphylococcus aureus subsp. aureus N315]
 gi|14246479|dbj|BAB56872.1| coenzyme PQQ synthesis homologue [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21203838|dbj|BAB94537.1| MW0672 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244025|emb|CAG42451.1| putative radical activating enzyme [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57285735|gb|AAW37829.1| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus COL]
 gi|87128070|gb|ABD22584.1| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|87202042|gb|ABD29852.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740239|gb|ABQ48537.1| Radical SAM domain protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945670|gb|ABR51606.1| Radical SAM domain protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150373691|dbj|BAF66951.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156721173|dbj|BAF77590.1| coenzyme PQQ synthesis homologue [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|160367783|gb|ABX28754.1| organic radical-activating protein [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253725074|gb|EES93803.1| organic radical-activating protein [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253729211|gb|EES97940.1| organic radical-activating protein [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257788941|gb|EEV27281.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus A9781]
 gi|257839079|gb|EEV63558.1| radical activating enzyme family protein [Staphylococcus aureus
           A9763]
 gi|257842509|gb|EEV66933.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus A9719]
 gi|257849448|gb|EEV73418.1| radical activating enzyme family protein [Staphylococcus aureus
           A9299]
 gi|257852200|gb|EEV76127.1| coenzyme PQQ synthesis [Staphylococcus aureus A8115]
 gi|257855403|gb|EEV78341.1| radical activating enzyme family protein [Staphylococcus aureus
           A6300]
 gi|257857146|gb|EEV80045.1| radical activating enzyme family protein [Staphylococcus aureus
           A6224]
 gi|257859429|gb|EEV82283.1| radical activating enzyme family protein [Staphylococcus aureus
           A5948]
 gi|257863904|gb|EEV86660.1| radical activating enzyme family protein [Staphylococcus aureus
           A5937]
 gi|259159333|gb|EEW44389.1| hypothetical protein SA930_0349 [Staphylococcus aureus 930918-3]
 gi|259163533|gb|EEW48090.1| hypothetical protein SAD30_2172 [Staphylococcus aureus D30]
 gi|262074620|gb|ACY10593.1| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus ED98]
 gi|269940287|emb|CBI48664.1| putative radical activating enzyme [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282591466|gb|EFB96538.1| 7-cyano-7-deazaguanosine (preQ) biosynthesis protein QueE
           [Staphylococcus aureus A10102]
 gi|282593660|gb|EFB98652.1| 7-cyano-7-deazaguanosine (preQ) biosynthesis protein QueE
           [Staphylococcus aureus A9765]
 gi|282763188|gb|EFC03319.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus A8117]
 gi|285816411|gb|ADC36898.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus aureus
           04-02981]
 gi|294823911|gb|EFG40337.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus A9754]
 gi|294968573|gb|EFG44596.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus A8819]
 gi|296886821|gb|EFH25725.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297177826|gb|EFH37075.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus A8796]
 gi|300886904|gb|EFK82106.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|302750608|gb|ADL64785.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304339778|gb|EFM05723.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312829203|emb|CBX34045.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129385|gb|EFT85378.1| organic radical-activating protein [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315197686|gb|EFU28021.1| organic radical-activating protein [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320139958|gb|EFW31819.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320141952|gb|EFW33780.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|329313432|gb|AEB87845.1| Radical SAM domain protein [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329724494|gb|EGG61001.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329728549|gb|EGG64982.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus 21189]
 gi|329729722|gb|EGG66123.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 237

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 85/212 (40%), Gaps = 24/212 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118
           +  G   +    ++ +E    G     +  ++GG P L   +  L+     +G   A+ET
Sbjct: 49  SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108

Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY--IGFDFERFSLQ 174
            G+   P    ID + +SPK          ++L  V  Q   S  N   + FD + +   
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVITQCVPSSLNLKVVVFDDKDYDFA 168

Query: 175 PM------DGPFLEENTNLAISYCFQNPKWRL 200
            M      D PF  +  N  +S    N   +L
Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDNHTEKL 200


>gi|83951567|ref|ZP_00960299.1| radical SAM domain protein [Roseovarius nubinhibens ISM]
 gi|83836573|gb|EAP75870.1| radical SAM domain protein [Roseovarius nubinhibens ISM]
          Length = 236

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 19/141 (13%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    I EIF  T+QGEG   G   VF R  GC+            +C +CDT    +  
Sbjct: 1   MSSLRISEIFGPTIQGEGILIGEPTVFVRAGGCDY-----------RCSWCDTPH-AVDS 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
                +      D+ +E     + +     L+GG P +Q   PLI     +G+  A ET 
Sbjct: 49  EHRSSWTPMTTFDIWDEIQRLSDGQPLTVSLSGGNPAIQDFGPLIALGRAQGYRFACETQ 108

Query: 120 GTIEPPQG----IDWICVSPK 136
           G+I   +G    +D + +SPK
Sbjct: 109 GSIA--RGWFNVLDTLVLSPK 127


>gi|86359303|ref|YP_471195.1| organic-radical-activating protein [Rhizobium etli CFN 42]
 gi|86283405|gb|ABC92468.1| organic-radical-activating protein [Rhizobium etli CFN 42]
          Length = 242

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 41/147 (27%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G   VF R  GC+            +C +CD+            
Sbjct: 8   VSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDS-----------L 45

Query: 65  YNVDQLADLIEEQWITGEKEGRY-------------CVLTGGEPLLQVDVPLIQALNKRG 111
           Y VD       +QW+    E  +               L+GG P +Q   PLI+  + +G
Sbjct: 46  YAVDSA---FRDQWLPMSVEAIWQEVTKLSGGNPLTVSLSGGNPAIQPLRPLIELGHSKG 102

Query: 112 FEIAVETNGTIEPP--QGIDWICVSPK 136
           +  A+ET G++     + +D + +SPK
Sbjct: 103 YRFALETQGSVAQNWFRDLDVLVLSPK 129


>gi|116329391|ref|YP_799111.1| organic radical activating protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116330008|ref|YP_799726.1| organic radical activating protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116122135|gb|ABJ80178.1| Organic radical activating enzyme [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116123697|gb|ABJ74968.1| Organic radical activating enzyme [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 243

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 97/238 (40%), Gaps = 48/238 (20%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           S+ EI+L+L GEG   G   VF R +GC+L  G        +  +CDT +  +  + G  
Sbjct: 13  SVHEIYLSLSGEGISTGIPTVFVRMAGCSLRCGMA----IGKKLWCDTPY-ALSPSAGEE 67

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI---------- 114
            ++ ++ + I+E      +     +LTGGEPL   +     AL    F            
Sbjct: 68  MDLKRVLNRIQELSPVYTQ----VLLTGGEPLEGGNRDFSLALGNEIFRTRKFSNSYPRA 123

Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKG-GQELKLVFPQVNVSPE-----NYIGF-- 166
            VETNG  E  +G+D    +     D K+ G G E ++    + +  +     + I F  
Sbjct: 124 RVETNGA-ESIEGLDQFVFT----LDYKLPGSGMENRMNLENLEIYNKRKNELDEIKFVI 178

Query: 167 ----DFER----FSLQPMDGPFLEENTNLAIS--------YCFQNPKWRLSVQTHKFI 208
               DFER      +  + G  L       +S              + RLS+QTHK+I
Sbjct: 179 RDRNDFERCLEVIKVHELSGNLLASPVQGELSPEILSEWLKSSLGSRLRLSLQTHKYI 236


>gi|126737387|ref|ZP_01753122.1| radical activating protein [Roseobacter sp. SK209-2-6]
 gi|126721972|gb|EBA18675.1| radical activating protein [Roseobacter sp. SK209-2-6]
          Length = 235

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 19/136 (13%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-- 62
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+        +   
Sbjct: 5   IAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDSLHAVDSENRHDW 53

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
            + + D++ D +    ++G K     + +GG P +Q   PLI+  +  G+  A ET G+I
Sbjct: 54  AKMSADEVFDEVCR--LSGGKPLTVSI-SGGNPAIQDFAPLIRLGHAAGYGFACETQGSI 110

Query: 123 EPPQ--GIDWICVSPK 136
             P    +D + +SPK
Sbjct: 111 AKPWFGDLDTLVLSPK 126


>gi|311030030|ref|ZP_07708120.1| radical SAM domain-containing protein [Bacillus sp. m3-13]
 gi|311032350|ref|ZP_07710440.1| radical SAM domain-containing protein [Bacillus sp. m3-13]
          Length = 239

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 16/138 (11%)

Query: 3   LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           L  + EIF  T+QGEG   G+  +F R +GC+            +C +CD+ F    G+ 
Sbjct: 4   LIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSA 51

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
                +    ++ E+    G K   +  ++GG P L  ++  L+Q L++   ++A+ET G
Sbjct: 52  KDDIVMMSHEEIYEQLVEIGGKAFNHVTISGGNPALLKNIGKLVQLLHENDIKVALETQG 111

Query: 121 TI--EPPQGIDWICVSPK 136
           +   +    ID + +SPK
Sbjct: 112 SKWQDWLMEIDDLTISPK 129


>gi|197117706|ref|YP_002138133.1| 7-carboxy-7-deazaguanine synthase [Geobacter bemidjiensis Bem]
 gi|197087066|gb|ACH38337.1| 7-carboxy-7-deazaguanine synthase [Geobacter bemidjiensis Bem]
          Length = 251

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 37/138 (26%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-------IQ 58
           + E F ++QGEG   G   VF R +GCNL            C FCDT  +        ++
Sbjct: 9   LVECFSSIQGEGVLVGLRQVFLRLAGCNL-----------NCSFCDTPGMSETPKECLLE 57

Query: 59  GTKGGR--------YNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVD-----VPLI 104
            T G R          ++++A L+ E W  G     + + +TGGEPLL        +P++
Sbjct: 58  LTPGRRDFFKVPNPVGLERVATLL-ESWTEGWPGIHHSISVTGGEPLLYAKELKEWLPVL 116

Query: 105 QALNKRGFEIAVETNGTI 122
           + L      + +ETNGT+
Sbjct: 117 RTL----LPVYLETNGTL 130


>gi|21673157|ref|NP_661222.1| radical activating enzyme, putative [Chlorobium tepidum TLS]
 gi|21646235|gb|AAM71564.1| radical activating enzyme, putative [Chlorobium tepidum TLS]
          Length = 220

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 23/118 (19%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +I EIF ++QGE   AG    F R +GC              CR+CDT +    GT    
Sbjct: 8   NISEIFYSIQGESSFAGWPCAFVRLAGCG-----------HGCRYCDTTYAEEPGTA--- 53

Query: 65  YNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
                  D I  + +  +     CV +TGGEPLLQ     L+ AL  R   + +ET G
Sbjct: 54  ----MTIDEIMHRVLAFDAP---CVEVTGGEPLLQSGTFGLLSALCDRHPVVLLETGG 104


>gi|156937491|ref|YP_001435287.1| radical SAM domain-containing protein [Ignicoccus hospitalis
           KIN4/I]
 gi|156566475|gb|ABU81880.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 352

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 25/165 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA----DLIEEQWITGEKEGRYCVLTGGEPL 96
           +R +  C FC ++         GR + D+L+    D+I E   T     +Y   TGGEPL
Sbjct: 19  ERCNFNCIFCHSE-------GAGRGSFDELSVNDYDMIAEA--TSRLGLKYVKFTGGEPL 69

Query: 97  LQVDV-PLIQALNKRGF-EIAVETNGTIEPPQ-------GIDWICV---SPKAGCDLKIK 144
           L+ D+  +I +  + GF EI++ TNG + P +       G+ WI V   S K     +I 
Sbjct: 70  LRSDLEEIIHSFKEHGFEEISITTNGFLLPERTEGLKEAGVSWINVSLHSLKRQRFRRIT 129

Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAI 189
           G   L  V   +  + EN I        L+ ++   +EE    AI
Sbjct: 130 GVDALNRVLNGIEKALENGIEVRVNVVVLRGINEDEVEEIVKYAI 174


>gi|78186318|ref|YP_374361.1| radical activating enzyme, putative [Chlorobium luteolum DSM 273]
 gi|78166220|gb|ABB23318.1| radical activating enzyme, putative [Chlorobium luteolum DSM 273]
          Length = 223

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 21/119 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF ++QGE   AG    F R +GC           S  CR+CDT +     T  
Sbjct: 5   ILQISEIFHSIQGESSFAGWPCTFIRLAGC-----------SHGCRYCDTTYA---KTAE 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
            R ++    D I+E             +TGGEPL Q  V  L+ AL   G  + +ET G
Sbjct: 51  RRLSI---GDTIDE---ARRYHAHLIEVTGGEPLEQPAVHKLLHALCDGGGGVMLETGG 103


>gi|75759343|ref|ZP_00739440.1| Queuosine biosynthesis protein QueE [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218896375|ref|YP_002444786.1| radical SAM domain protein [Bacillus cereus G9842]
 gi|74493175|gb|EAO56294.1| Queuosine biosynthesis protein QueE [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218542694|gb|ACK95088.1| radical SAM domain protein [Bacillus cereus G9842]
          Length = 238

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 16/140 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           +   +       D+ +E    G ++  +  ++GG P L  ++  L+  L + G   A+ET
Sbjct: 49  SAKNQIRQMTAEDIWDELVAIGGEKFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPK 136
            G+   +    ID + +SPK
Sbjct: 109 QGSKWQDWLLQIDEVTISPK 128


>gi|86136125|ref|ZP_01054704.1| radical SAM domain protein [Roseobacter sp. MED193]
 gi|85826999|gb|EAQ47195.1| radical SAM domain protein [Roseobacter sp. MED193]
          Length = 206

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+        +   
Sbjct: 5   IAEIFGPTIQGEGALIGEPTVFVRAGGCDF-----------RCNWCDSLHAVDSEYRHSW 53

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
             +   A     + ++G++      L+GG P +Q   PLI      G+  A ET G+I  
Sbjct: 54  APMTAEAVWDRVRQLSGDRP-LTVSLSGGNPAIQDFGPLIAMGRAAGYRFACETQGSIAR 112

Query: 125 P--QGIDWICVSPK 136
           P    +D + +SPK
Sbjct: 113 PWFADLDTLVLSPK 126


>gi|284023732|ref|ZP_06378130.1| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus 132]
          Length = 237

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 24/207 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118
           +  G   +    ++ +E    G     +  ++GG P L   +  L+     +G   A+ET
Sbjct: 49  SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108

Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY--IGFDFERFSLQ 174
            G+   P    ID + +SPK          ++L  V  Q   S  N   + FD + +   
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVITQCVPSSLNLKVVVFDDKDYDFA 168

Query: 175 PM------DGPFLEENTNLAISYCFQN 195
            M      D PF  +  N  +S    N
Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDN 195


>gi|296284595|ref|ZP_06862593.1| coenzyme PQQ synthesis protein, conjectural [Citromicrobium
           bathyomarinum JL354]
          Length = 208

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 52/126 (41%), Gaps = 20/126 (15%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT----DFVGIQGTKGG 63
           EIF ++QGEG  AG    F R S CNL            C +CDT     F G +     
Sbjct: 22  EIFASVQGEGPSAGEPTAFVRLSRCNL-----------ACVWCDTAYTWHFAGDERPHRS 70

Query: 64  RYNVDQLAD--LIEEQWITGEKEG---RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
               D+ A+   +E + +         R  V+TGGEP+LQ               + +ET
Sbjct: 71  GQTFDRKANQVTLEVEDVAARIAALGQRRLVVTGGEPMLQAPALAQLLALLPDVTVEIET 130

Query: 119 NGTIEP 124
           NGT  P
Sbjct: 131 NGTAFP 136


>gi|183222780|ref|YP_001840776.1| putative organic radical activating protein [Leptospira biflexa
          serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189912811|ref|YP_001964366.1| organic radical activating enzyme [Leptospira biflexa serovar
          Patoc strain 'Patoc 1 (Ames)']
 gi|167777487|gb|ABZ95788.1| Organic radical activating enzyme [Leptospira biflexa serovar
          Patoc strain 'Patoc 1 (Ames)']
 gi|167781202|gb|ABZ99500.1| Putative organic radical activating enzyme [Leptospira biflexa
          serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 236

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 8/91 (8%)

Query: 6  IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
          I EI+ ++ GEG   G   VF RF+GC+L  G+   R      +CDT +    G   G  
Sbjct: 5  IHEIYSSISGEGISQGIPTVFVRFAGCSLRCGKTDTR----SLWCDTPYA--LGPNQGE- 57

Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
              L+ +++E        G   +LTGGEPL
Sbjct: 58 -TKPLSTIMDEIVALDPTHGYQILLTGGEPL 87


>gi|167043382|gb|ABZ08085.1| putative Radical SAM superfamily protein [uncultured marine
           crenarchaeote HF4000_ANIW141O9]
          Length = 237

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 19/116 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +++GEG   G   +F R +GC              C +CDT    +    G  Y
Sbjct: 5   IFEIFTSIEGEGILYGTKTLFVRLAGC-----------PYSCFYCDT-LDALPLDSGKEY 52

Query: 66  NVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           ++ +  +LI+    T  ++  Y V  TGGEPL+Q +    L + +  RG    +E+
Sbjct: 53  SITEACNLID----TSLQDNTYKVNFTGGEPLIQYEAVYELAKHVKARGLPTYLES 104


>gi|242398853|ref|YP_002994277.1| Organic radical activating enzyme, radical SAM superfamily
           [Thermococcus sibiricus MM 739]
 gi|242265246|gb|ACS89928.1| Organic radical activating enzyme, radical SAM superfamily
           [Thermococcus sibiricus MM 739]
          Length = 251

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 33/156 (21%)

Query: 8   EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTK 61
           EIF + QGEGG       GR  +F RF+GC+L           +C +CD+ +++      
Sbjct: 5   EIFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------KCWWCDSANYIIASKVP 53

Query: 62  GGRYNVDQLADLIE--------EQWITG-----EKEGRYCVLTGGEPLLQVD--VPLIQA 106
             RY V+      E        E+ ++        +      TGGEP LQ      L++ 
Sbjct: 54  KWRYEVEPFTGKFEYKPNPANFEEVVSAILHLDTGDIHSISYTGGEPTLQTRNLSTLMKK 113

Query: 107 LNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
           +++ GF+  +ETNG+  P +  D   +   A  D+K
Sbjct: 114 MHELGFKNFLETNGS-RPERINDIAHLVDYASVDIK 148


>gi|222149727|ref|YP_002550684.1| radical activating protein [Agrobacterium vitis S4]
 gi|221736709|gb|ACM37672.1| radical activating protein [Agrobacterium vitis S4]
          Length = 255

 Score = 45.1 bits (105), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 23/138 (16%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G+  VF R  GC+            +C +CD+    +   +  R
Sbjct: 16  VSEIFGPTIQGEGVLIGQPTVFVRMGGCDY-----------RCSWCDS----LHAVES-R 59

Query: 65  YNVDQLADLIEEQWITGEKEG----RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           +  + L   ++  W   E           L+GG P +Q    LI   ++RG+  A+ET G
Sbjct: 60  FREEWLPMSVQAIWAEVESLSGGVPLMVSLSGGNPAIQPLGALIAHGHERGYRFALETQG 119

Query: 121 TIEPP--QGIDWICVSPK 136
           +I       +D + VSPK
Sbjct: 120 SIARDWFADLDVLVVSPK 137


>gi|11498053|ref|NP_069277.1| hypothetical protein AF0441 [Archaeoglobus fulgidus DSM 4304]
 gi|2650186|gb|AAB90793.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 225

 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 31/145 (21%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           EIF ++QGEG + G   +F RF+GCNL            C +CDT        K     +
Sbjct: 7   EIFESIQGEGFYIGVRQLFVRFAGCNL-----------NCYYCDT-------PKTSENCL 48

Query: 68  DQLADLIEEQWITGEK-EGRY-------CVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           D  A+   +  ++ E  +GR           TGGEP+LQ +   I +L+K      +E+N
Sbjct: 49  DLTANRTLKNPVSAEYVQGRIDSSKVHSVCFTGGEPMLQAE--FIASLSK-THPFYLESN 105

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIK 144
            T+  P+    +        DLK++
Sbjct: 106 MTL--PEKAKKLKFCDYVAGDLKVR 128


>gi|254173693|ref|ZP_04880365.1| organic radical activating enzyme, radical SAM superfamily
           [Thermococcus sp. AM4]
 gi|214032385|gb|EEB73215.1| organic radical activating enzyme, radical SAM superfamily
           [Thermococcus sp. AM4]
          Length = 253

 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 35/159 (22%)

Query: 6   IKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQG 59
           + E+F + QGEGG       GR  +F RF+GC+L            C +CD+ +++    
Sbjct: 5   MAEVFNSWQGEGGSVEGSAFGRRQIFIRFAGCDL-----------NCAWCDSREYIDASR 53

Query: 60  TKGGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLI 104
               RY V+              L +++E        +      TGGEP LQV     L+
Sbjct: 54  VSRWRYEVEPFTGKFEYRPNPASLDEVVEAVTRLDTGDIHSISYTGGEPTLQVKPLKALM 113

Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWIC-VSPKAGCDLK 142
           + +   GF+  +ET+G +  P+ I  +  ++  A  D+K
Sbjct: 114 EEMKSLGFDNFLETHGGL--PELIREVAHLTDYASVDIK 150


>gi|153008343|ref|YP_001369558.1| radical SAM domain-containing protein [Ochrobactrum anthropi ATCC
           49188]
 gi|151560231|gb|ABS13729.1| Radical SAM domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 246

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 23/138 (16%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  TLQGEG   G   VF R  GC+            +C +CD+    +   +  R
Sbjct: 12  IAEIFGPTLQGEGVLIGEPTVFVRTGGCDY-----------RCVWCDS----LHAVES-R 55

Query: 65  YNVDQLADLIEEQW----ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           +  +  A  +E  W         +     L+GG P +Q   PLI+     G+  A+ET G
Sbjct: 56  FRREWKAMSVEAVWGEVTTLSRNKPLTVSLSGGNPAIQPLGPLIEHGKTEGYRFALETQG 115

Query: 121 TIEPP--QGIDWICVSPK 136
           ++       +D + +SPK
Sbjct: 116 SVAQDWFSALDTLVLSPK 133


>gi|315645295|ref|ZP_07898420.1| radical SAM domain protein [Paenibacillus vortex V453]
 gi|315279337|gb|EFU42643.1| radical SAM domain protein [Paenibacillus vortex V453]
          Length = 244

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 84/204 (41%), Gaps = 30/204 (14%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F      K   
Sbjct: 10  VLEIFGPTVQGEGLVIGQKTMFVRTAGCDY-----------SCSWCDSSFTWDGSAKN-- 56

Query: 65  YNVDQLA--DLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
             + QL+   + +E    G     +  ++GG P L  ++  L+  L+ +G  + +ET G+
Sbjct: 57  -EIKQLSAQTIYDELNSLGGTTFEHVTISGGNPALIKNIGYLVDLLHDKGIRVGLETQGS 115

Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
              +    ID + VSPK      I     L  V   +N SP N I      F        
Sbjct: 116 RWQDWMADIDDLTVSPKPPSSGMITDWDRLDGVIKNLNNSP-NEICIKVVIFD------- 167

Query: 180 FLEENTNLAISYCFQNPKWRLSVQ 203
             E++   AI    + P  RL +Q
Sbjct: 168 --EDDLQYAIKVHKRYPHMRLVLQ 189


>gi|14521605|ref|NP_127081.1| coenzyme PQQ synthesis protein III related [Pyrococcus abyssi GE5]
 gi|5458824|emb|CAB50311.1| Radical SAM family protein [Pyrococcus abyssi GE5]
          Length = 254

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 35/167 (20%)

Query: 6   IKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-FVGIQG 59
           + EIF + QGEGG       GR  +F RF+GC+L           +C +CD+  F+    
Sbjct: 6   LAEIFNSWQGEGGSVEGSAFGRRQIFIRFAGCDL-----------RCSWCDSKAFIDASK 54

Query: 60  TKGGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLI 104
            K  R  V+              L ++I+        +      TGGEP LQ+     L+
Sbjct: 55  VKRWRIEVEPFSRKFEYRENPASLDEVIKVVLSLDTGDVHSISYTGGEPTLQIKGLKALM 114

Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWIC-VSPKAGCDLKIKGGQELK 150
           + L + GF+  +ET+G    P+ I  +  ++  A  D+K +  +  K
Sbjct: 115 KELKEVGFDNFLETHGGF--PEFIREVAHLTDYASVDIKDESAKATK 159


>gi|261403228|ref|YP_003247452.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
 gi|261370221|gb|ACX72970.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
          Length = 243

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 22/159 (13%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---FVGI--QGT 60
           I+EIF ++ GEG + GR  +F RF+GC L            C +CD +    V +  Q  
Sbjct: 2   IREIFNSIMGEGKYIGRRFIFIRFAGCPL-----------NCLYCDEEHKKHVNLVEQYP 50

Query: 61  KGGRY---NVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLI-QALNKRGFEIA 115
             G++   N++   D+I+        +      TGGEPLL   ++  I + L   G+   
Sbjct: 51  SSGKFEKQNLESEEDIIKAVNKLKTPDLFSVSFTGGEPLLYHKEIKEISKILKNLGYRTF 110

Query: 116 VETNGTI-EPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
           +E+NG   E     D   +  K     K  G +E K ++
Sbjct: 111 LESNGIFPERVFHFDIASIDIKLKDHFKNIGEEEYKKIY 149


>gi|212223604|ref|YP_002306840.1| organic radical activating enzyme [Thermococcus onnurineus NA1]
 gi|212008561|gb|ACJ15943.1| organic radical activating enzyme [Thermococcus onnurineus NA1]
          Length = 253

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 36/164 (21%)

Query: 1   MKLYSIKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DF 54
           MKL  + E+F + QGEGG       GR  +F RF+GC+L            C +CD+ +F
Sbjct: 1   MKLI-MAEVFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------NCVWCDSKEF 48

Query: 55  VGIQGTKGGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100
           +        RY V+              L ++++        +      TGGEP LQV  
Sbjct: 49  IDASKVLRWRYEVEPFTGKFEYKPNPASLGEVVDAILRLDTGDIHSISYTGGEPTLQVRP 108

Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDWIC-VSPKAGCDLK 142
              L++ +++ GF   +ET+G +  P+ I  +  ++  A  D+K
Sbjct: 109 LKALMERMHELGFSNFLETHGGL--PELIKEVAHLTDYASIDIK 150


>gi|255658308|ref|ZP_05403717.1| radical SAM domain protein [Mitsuokella multacida DSM 20544]
 gi|260849626|gb|EEX69633.1| radical SAM domain protein [Mitsuokella multacida DSM 20544]
          Length = 251

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 53/138 (38%), Gaps = 40/138 (28%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-------------- 53
           EIF ++QGEG + G   VF R  GCNL            C +CDT+              
Sbjct: 10  EIFSSIQGEGKYVGCRQVFVRLEGCNL-----------DCSYCDTENKPGSHPACQVETA 58

Query: 54  -----FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                F  I+           +A+L+ E  +  E        TGGEPLL         L 
Sbjct: 59  AGSRTFATIKNPMTASETAAVIANLLRE--VPHEAVS----FTGGEPLLHAAFIRAVVLQ 112

Query: 109 KRGF----EIAVETNGTI 122
            R      ++ +ETNGT+
Sbjct: 113 LRALGQPCKVFLETNGTL 130


>gi|229002868|ref|ZP_04160744.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus mycoides Rock3-17]
 gi|229008542|ref|ZP_04165969.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus mycoides Rock1-4]
 gi|228752737|gb|EEM02338.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus mycoides Rock1-4]
 gi|228758393|gb|EEM07564.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus mycoides Rock3-17]
          Length = 232

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 26/138 (18%)

Query: 8   EIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
           EIF  T+QGEG   G+  +F R +GC+             C +CD+ F     TK     
Sbjct: 2   EIFGPTIQGEGMVIGQKTMFIRTAGCDY-----------SCSWCDSAFTWDGSTKE---Q 47

Query: 67  VDQLADLIEEQW-----ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           + Q+A   EE W     I GE    +  ++GG P+L  ++  L+  L + G   A+ET G
Sbjct: 48  IRQMAP--EEIWNELVEIGGEN-FSHVTISGGNPVLLKNIQFLLTVLKENGIRTAIETQG 104

Query: 121 TI--EPPQGIDWICVSPK 136
           +   E    ID + +SPK
Sbjct: 105 SKWQEWLLQIDEVTISPK 122


>gi|30019493|ref|NP_831124.1| organic radical activating protein [Bacillus cereus ATCC 14579]
 gi|29895037|gb|AAP08325.1| Organic radical activating enzyme [Bacillus cereus ATCC 14579]
          Length = 238

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 16/140 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           +   +       D+ +E    G +   +  ++GG P L  ++  L+  L + G   A+ET
Sbjct: 49  SAKDQIRQMTPEDIWDELVAIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPK 136
            G+   +    ID I +SPK
Sbjct: 109 QGSKWQDWLLQIDEITISPK 128


>gi|73663319|ref|YP_302100.1| putative radical activating enzyme [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72495834|dbj|BAE19155.1| putative radical activating enzyme [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 238

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 16/140 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSSFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118
           +      +    ++ ++ +        +  ++GG P L   +  L+   + +G + A+ET
Sbjct: 49  SAKEDIRMMSAEEIYDQLYHIAGDSFNHVTISGGNPALIKGIQQLVDLFDDKGIQSALET 108

Query: 119 NGTIEPP--QGIDWICVSPK 136
            G+   P    ID + +SPK
Sbjct: 109 QGSKFQPWMTQIDDLTISPK 128


>gi|317129081|ref|YP_004095363.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474029|gb|ADU30632.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus cellulosilyticus DSM 2522]
          Length = 242

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 20/142 (14%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M  + + EIF  T+QGEG   GR  +F R +GC+             C +CD+ F     
Sbjct: 1   MYKFPVLEIFGPTIQGEGMVVGRKTMFVRTAGCDY-----------SCSWCDSAFTWDGS 49

Query: 60  TKGG--RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAV 116
           +K    +   D++   +++    G K   Y  ++GG P L   +  LI  L+    ++A+
Sbjct: 50  SKEDIKQLTADEILCRLKKD---GGKSFDYVTISGGNPALFSHLDELINLLHSENVKVAL 106

Query: 117 ETNGTI--EPPQGIDWICVSPK 136
           ET G+   E    ID + +SPK
Sbjct: 107 ETQGSRWQEWFLKIDDLTLSPK 128


>gi|218233066|ref|YP_002366125.1| radical SAM domain protein [Bacillus cereus B4264]
 gi|218161023|gb|ACK61015.1| radical SAM domain protein [Bacillus cereus B4264]
          Length = 238

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 16/140 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMIVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           +   +       D+ +E    G +   +  ++GG P L  ++  L+  L + G   A+ET
Sbjct: 49  SAKDQIRQMTPEDIWDELVAIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPK 136
            G+   +    ID I +SPK
Sbjct: 109 QGSKWQDWLLQIDEITISPK 128


>gi|228995355|ref|ZP_04155040.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus pseudomycoides DSM 12442]
 gi|228764397|gb|EEM13260.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus pseudomycoides DSM 12442]
          Length = 232

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 26/138 (18%)

Query: 8   EIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
           EIF  T+QGEG   G+  +F R +GC+             C +CD+ F     TK     
Sbjct: 2   EIFGPTIQGEGMVIGQKTMFIRTAGCDY-----------SCSWCDSAFTWDGSTKE---Q 47

Query: 67  VDQLADLIEEQW-----ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           + Q+A   EE W     I GE    +  ++GG P+L  ++  L+  L + G   A+ET G
Sbjct: 48  IRQMAP--EEIWNELVGIGGEN-FSHVTISGGNPVLLKNIQFLLTVLKENGIRTAIETQG 104

Query: 121 TI--EPPQGIDWICVSPK 136
           +   E    ID + +SPK
Sbjct: 105 SKWQEWLLQIDEVTISPK 122


>gi|303247444|ref|ZP_07333716.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
 gi|302491140|gb|EFL51032.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
          Length = 210

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 21/122 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + EIF ++QGE  +AG    F R SGCNL            C +CDT +        
Sbjct: 1   MLRVHEIFASIQGESSYAGYPCAFLRLSGCNL-----------DCSWCDTRYA------S 43

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGT 121
             +    L +  ++    G        LTGGEPLL+ +   L  +L   G  + VETNG+
Sbjct: 44  ASFTAMSLDEARQKLLALGLP---LVELTGGEPLLEPLAPALAASLADAGATVLVETNGS 100

Query: 122 IE 123
           ++
Sbjct: 101 LD 102


>gi|30261442|ref|NP_843819.1| radical SAM domain-containing protein [Bacillus anthracis str.
           Ames]
 gi|47526631|ref|YP_017980.1| radical sam domain-containing protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49184276|ref|YP_027528.1| radical SAM domain-containing protein [Bacillus anthracis str.
           Sterne]
 gi|52143995|ref|YP_082833.1| radical SAM domain-containing protein [Bacillus cereus E33L]
 gi|65318711|ref|ZP_00391670.1| COG0602: Organic radical activating enzymes [Bacillus anthracis
           str. A2012]
 gi|118476912|ref|YP_894063.1| radical SAM domain-containing protein [Bacillus thuringiensis str.
           Al Hakam]
 gi|165870409|ref|ZP_02215064.1| radical SAM domain protein [Bacillus anthracis str. A0488]
 gi|167634333|ref|ZP_02392654.1| radical SAM domain protein [Bacillus anthracis str. A0442]
 gi|167639360|ref|ZP_02397632.1| radical SAM domain protein [Bacillus anthracis str. A0193]
 gi|170686800|ref|ZP_02878020.1| radical SAM domain protein [Bacillus anthracis str. A0465]
 gi|170706317|ref|ZP_02896778.1| radical SAM domain protein [Bacillus anthracis str. A0389]
 gi|177651608|ref|ZP_02934397.1| radical SAM domain protein [Bacillus anthracis str. A0174]
 gi|190568020|ref|ZP_03020930.1| radical SAM domain protein [Bacillus anthracis Tsiankovskii-I]
 gi|196035271|ref|ZP_03102676.1| radical SAM domain protein [Bacillus cereus W]
 gi|196040614|ref|ZP_03107913.1| radical SAM domain protein [Bacillus cereus NVH0597-99]
 gi|196046471|ref|ZP_03113696.1| radical SAM domain protein [Bacillus cereus 03BB108]
 gi|218902549|ref|YP_002450383.1| radical SAM domain protein [Bacillus cereus AH820]
 gi|225863305|ref|YP_002748683.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus cereus 03BB102]
 gi|227815811|ref|YP_002815820.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus anthracis str. CDC 684]
 gi|229604565|ref|YP_002865855.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus anthracis str. A0248]
 gi|254682495|ref|ZP_05146356.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus anthracis str. CNEVA-9066]
 gi|254726158|ref|ZP_05187940.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus anthracis str. A1055]
 gi|254733911|ref|ZP_05191625.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus anthracis str. Western North America USA6153]
 gi|254740399|ref|ZP_05198090.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus anthracis str. Kruger B]
 gi|254753789|ref|ZP_05205824.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus anthracis str. Vollum]
 gi|254758886|ref|ZP_05210913.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus anthracis str. Australia 94]
 gi|30255296|gb|AAP25305.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus anthracis str. Ames]
 gi|47501779|gb|AAT30455.1| radical SAM domain protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178203|gb|AAT53579.1| radical SAM domain protein [Bacillus anthracis str. Sterne]
 gi|51977464|gb|AAU19014.1| radical SAM domain protein [Bacillus cereus E33L]
 gi|118416137|gb|ABK84556.1| preQ(0) biosynthesis protein QueE [Bacillus thuringiensis str. Al
           Hakam]
 gi|164713904|gb|EDR19426.1| radical SAM domain protein [Bacillus anthracis str. A0488]
 gi|167512799|gb|EDR88173.1| radical SAM domain protein [Bacillus anthracis str. A0193]
 gi|167530221|gb|EDR92947.1| radical SAM domain protein [Bacillus anthracis str. A0442]
 gi|170128851|gb|EDS97717.1| radical SAM domain protein [Bacillus anthracis str. A0389]
 gi|170669323|gb|EDT20066.1| radical SAM domain protein [Bacillus anthracis str. A0465]
 gi|172082886|gb|EDT67949.1| radical SAM domain protein [Bacillus anthracis str. A0174]
 gi|190560754|gb|EDV14729.1| radical SAM domain protein [Bacillus anthracis Tsiankovskii-I]
 gi|195991948|gb|EDX55911.1| radical SAM domain protein [Bacillus cereus W]
 gi|196022655|gb|EDX61337.1| radical SAM domain protein [Bacillus cereus 03BB108]
 gi|196028404|gb|EDX67012.1| radical SAM domain protein [Bacillus cereus NVH0597-99]
 gi|218535375|gb|ACK87773.1| radical SAM domain protein [Bacillus cereus AH820]
 gi|225789486|gb|ACO29703.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus cereus 03BB102]
 gi|227002910|gb|ACP12653.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus anthracis str. CDC 684]
 gi|229268973|gb|ACQ50610.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus anthracis str. A0248]
          Length = 238

 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 21/178 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           +   +       D+  E    G +   +  ++GG P+L  ++  L+  L + G   A+ET
Sbjct: 49  SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169
            G+   +    ID I +SPK          Q+L     KL    +++    +  +DFE
Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFE 166


>gi|206977517|ref|ZP_03238411.1| radical SAM domain protein [Bacillus cereus H3081.97]
 gi|217958918|ref|YP_002337466.1| radical SAM domain protein [Bacillus cereus AH187]
 gi|222095075|ref|YP_002529135.1| radical sam domain protein [Bacillus cereus Q1]
 gi|206744235|gb|EDZ55648.1| radical SAM domain protein [Bacillus cereus H3081.97]
 gi|217067272|gb|ACJ81522.1| radical SAM domain protein [Bacillus cereus AH187]
 gi|221239133|gb|ACM11843.1| radical SAM domain protein [Bacillus cereus Q1]
          Length = 238

 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 21/178 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           +   +       D+  E    G +   +  ++GG P+L  ++  L+  L + G   A+ET
Sbjct: 49  SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169
            G+   +    ID I +SPK          Q+L     KL    +++    +  +DFE
Sbjct: 109 QGSKWQDWLLEIDEITISPKPPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFE 166


>gi|49481559|ref|YP_035567.1| radical SAM domain-containing protein [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|49333115|gb|AAT63761.1| radical SAM domain protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 238

 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 21/178 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           +   +       D+  E    G +   +  ++GG P+L  ++  L+  L + G   A+ET
Sbjct: 49  SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169
            G+   +    ID I +SPK          Q+L     KL    +++    +  +DFE
Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSAMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFE 166


>gi|190893559|ref|YP_001980101.1| organic-radical-activating protein [Rhizobium etli CIAT 652]
 gi|190698838|gb|ACE92923.1| organic-radical-activating protein [Rhizobium etli CIAT 652]
          Length = 242

 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 25/139 (17%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G   VF R  GC+            +C +CD+        +   
Sbjct: 8   VSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDSLHAVDSAFR--- 53

Query: 65  YNVDQLADLIEE---QWITGEKEGR--YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
              DQ   +  E   Q +T    GR     L+GG P +Q   PLI+  + +G+  A+ET 
Sbjct: 54  ---DQWIPMSTEAIWQEVTKLSAGRPMTVSLSGGNPAIQPLGPLIELGHSQGYRFALETQ 110

Query: 120 GTIEPP--QGIDWICVSPK 136
           G++     + +D + +SPK
Sbjct: 111 GSVARNWFRDLDVLVLSPK 129


>gi|317052447|ref|YP_004113563.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfurispirillum indicum S5]
 gi|316947531|gb|ADU67007.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfurispirillum indicum S5]
          Length = 236

 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 27/128 (21%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           G +A      GCNL           +CR+C    + +   + GR   DQL + I+   I 
Sbjct: 21  GEIATTVFTHGCNL-----------RCRYCHNPALVL--GQPGRSRQDQLLEYIDRHQIG 67

Query: 81  GEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE-------PPQGIDWIC 132
                    +TGGEPL Q ++  L+Q L  R   I ++TNGT+          + +D++ 
Sbjct: 68  A------VAITGGEPLFQRELETLLQQLRSRKIRIKLDTNGTLPHRLKQVLEQELVDFVA 121

Query: 133 VSPKAGCD 140
           V  KA  D
Sbjct: 122 VDVKAFND 129


>gi|138894535|ref|YP_001124988.1| organic radical activating protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266048|gb|ABO66243.1| Organic radical activating enzyme [Geobacillus thermodenitrificans
           NG80-2]
          Length = 225

 Score = 44.3 bits (103), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 19/121 (15%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA--DLIEEQW 78
           G+  +F R +GC+            +CR+CD+ F         +  ++QL   D+ +   
Sbjct: 4   GQKTMFVRTAGCDY-----------RCRWCDSAFTW---DGSAKEEIEQLTAEDIWQRLE 49

Query: 79  ITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSP 135
             G +  R+  ++GG PLL   +  L+  L+++G ++AVET G+   +    +D + +SP
Sbjct: 50  AIGGRRFRHVTISGGNPLLLAALGELVALLHEKGVQVAVETQGSRWQDWLLDVDDVTISP 109

Query: 136 K 136
           K
Sbjct: 110 K 110


>gi|229541150|ref|ZP_04430210.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus coagulans 36D1]
 gi|229325570|gb|EEN91245.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus coagulans 36D1]
          Length = 241

 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 16/135 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G + GR
Sbjct: 7   VIEIFGPTIQGEGMVIGKKTMFVRTAGCDY-----------ACSWCDSAFTW-NGEEKGR 54

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
             +    ++ ++   TG +   +  ++GG PLL   +  L+  L       AVET G+  
Sbjct: 55  IALMTAEEIFQKLKETGGENFSHVTISGGNPLLLKGLGELVDLLKTHQIRTAVETQGSRW 114

Query: 124 PP--QGIDWICVSPK 136
                 +D + +SPK
Sbjct: 115 QNWLPDVDDVTISPK 129


>gi|150401262|ref|YP_001325028.1| radical SAM domain-containing protein [Methanococcus aeolicus
           Nankai-3]
 gi|150013965|gb|ABR56416.1| Radical SAM domain protein [Methanococcus aeolicus Nankai-3]
          Length = 248

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 59/143 (41%), Gaps = 12/143 (8%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGC--NLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           I E+F ++ GEG   GR  +F RF GC  N     E  +    CR    + V   G    
Sbjct: 2   ISEVFSSIMGEGKFIGRRYIFIRFKGCPLNCIYCDEYTKNDMPCR---VEEVSGSGIFKE 58

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
             N  +  +LIE        +      TGGEPLL  D        LN  G +  +E+NG 
Sbjct: 59  YINTAENNNLIEIINKIKTPDLFAISFTGGEPLLYADKIKEYSDILNDLGHKTHLESNGM 118

Query: 122 IEPPQGIDWICVSPKAGCDLKIK 144
              P  I++   S     D+K+K
Sbjct: 119 F--PDKINYFDYS---SIDIKLK 136


>gi|254512582|ref|ZP_05124648.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Rhodobacteraceae bacterium KLH11]
 gi|221532581|gb|EEE35576.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Rhodobacteraceae bacterium KLH11]
          Length = 233

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 60/135 (44%), Gaps = 17/135 (12%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G+  VF R  GC+            +C +CD+    +  T    
Sbjct: 5   IAEIFGPTVQGEGALIGQPTVFVRTGGCDF-----------RCSWCDS-LHAVDSTFRQS 52

Query: 65  YNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           +      D+  E Q ++G +      L+GG P +Q   PLI      G+  A ET G+I 
Sbjct: 53  WKTMSTRDVWTEIQRLSGGRP-LTVSLSGGNPAIQDFGPLIGYGLDAGYAFACETQGSIA 111

Query: 124 PPQGID--WICVSPK 136
            P   D   + +SPK
Sbjct: 112 KPWFADLAMLVLSPK 126


>gi|42780534|ref|NP_977781.1| radical SAM domain-containing protein [Bacillus cereus ATCC 10987]
 gi|42736454|gb|AAS40389.1| radical SAM domain protein [Bacillus cereus ATCC 10987]
          Length = 238

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 21/178 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           +   +       D+  E    G +   +  ++GG P L  ++  L+  L + G   A+ET
Sbjct: 49  SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169
            G+   +    ID I +SPK          Q+L     KL    +++    +  +DFE
Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMKTDFQKLDAMIQKLAGKDISLKVVVFDDYDFE 166


>gi|327198318|ref|YP_004306892.1| QueE [Streptococcus phage Dp-1]
 gi|314912620|gb|ADT64011.1| QueE [Streptococcus phage Dp-1]
          Length = 264

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 20/139 (14%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G+  +F R  GC+             C +CD+ F     T+   
Sbjct: 25  IMEIFGPTIQGEGMVIGQKTIFIRTGGCDY-----------HCNWCDSAFTWNGTTEPEY 73

Query: 65  YNVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQVDVP---LIQALNKRGFEIAVETN 119
               + A  I +      GE+   +  LTGG P L ++ P   +I  L + GF+  +ET 
Sbjct: 74  ITGKEAASRILKLAFNDKGEQICNHVTLTGGNPAL-INEPMAKMISILKEHGFKFGLETQ 132

Query: 120 GTI--EPPQGIDWICVSPK 136
           GT   E  + +  I +SPK
Sbjct: 133 GTRFQEWFKEVSDITISPK 151


>gi|206967568|ref|ZP_03228524.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus cereus AH1134]
 gi|206736488|gb|EDZ53635.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus cereus AH1134]
          Length = 238

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 16/140 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           +   +       D+ +E    G +   +  ++GG P L  ++  L+  L + G   A+ET
Sbjct: 49  SAKDQIRQMTPEDIWDELVAIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPK 136
            G+   +    ID + +SPK
Sbjct: 109 QGSKWQDWLLQIDEVTISPK 128


>gi|317052127|ref|YP_004113243.1| Radical SAM domain-containing protein [Desulfurispirillum indicum
           S5]
 gi|316947211|gb|ADU66687.1| Radical SAM domain protein [Desulfurispirillum indicum S5]
          Length = 240

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 24/128 (18%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK---- 61
           I+E+F ++QGEG   GR  +F R  GCNL            C +CDT    I        
Sbjct: 5   IQEMFWSVQGEGPRCGRPQLFVRLHGCNL-----------TCSYCDTPASLIPRAPQSFP 53

Query: 62  -GGRYNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVDVPLIQALNK-----RGFEI 114
             GR   + +     +  +  E      V +TGGEPL Q D   + A  +        E+
Sbjct: 54  WHGRTVPNPVPLEFLQTLVAPELPFVESVSITGGEPLCQGD--FVAAFGRWLCQDMAMEV 111

Query: 115 AVETNGTI 122
            +ETNGT 
Sbjct: 112 LLETNGTF 119


>gi|186684456|ref|YP_001867652.1| radical SAM domain-containing protein [Nostoc punctiforme PCC
           73102]
 gi|186466908|gb|ACC82709.1| Radical SAM domain protein [Nostoc punctiforme PCC 73102]
          Length = 265

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 61/135 (45%), Gaps = 39/135 (28%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-------GIQGT 60
           E+F  +QGEG + G   +F RF+ C+L           +C FCD+           I+ +
Sbjct: 15  EVFSAIQGEGLNVGTRQIFIRFALCDL-----------RCHFCDSAHTWNAPATCRIERS 63

Query: 61  KGGR-----YNVDQLADLIEEQWITGEKEGRYCV-----LTGGEPLLQVD-----VPLIQ 105
            G R      N   L  LIE  W+  E++   C+     LTGGEPLL        +P ++
Sbjct: 64  PGLRDFEIHSNPVPLPILIE--WV--EQQNLPCLHDSISLTGGEPLLHAPFLTQFLPQVR 119

Query: 106 ALNKRGFEIAVETNG 120
           A+   G  I +ET G
Sbjct: 120 AIT--GLPIYLETGG 132


>gi|301052981|ref|YP_003791192.1| radical SAM domain-containing protein [Bacillus anthracis CI]
 gi|300375150|gb|ADK04054.1| radical SAM domain protein [Bacillus cereus biovar anthracis str.
           CI]
          Length = 238

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 21/178 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           +   +       D+  E    G +   +  ++GG P+L  ++  L+  L + G   A+ET
Sbjct: 49  SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPVLLKNIGFLLSILKENGMRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169
            G+   +    ID I +SPK          Q+L     KL    +++    +  +DFE
Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFE 166


>gi|258423359|ref|ZP_05686250.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus A9635]
 gi|257846420|gb|EEV70443.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus A9635]
          Length = 237

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 84/212 (39%), Gaps = 24/212 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118
           +      +    ++ +E    G     +  ++GG P L   +  L+     +G   A+ET
Sbjct: 49  SAKSDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108

Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY--IGFDFERFSLQ 174
            G+   P    ID + +SPK          ++L  V  Q   S  N   + FD + +   
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVIAQCVPSSLNLKVVVFDDKDYDFA 168

Query: 175 PM------DGPFLEENTNLAISYCFQNPKWRL 200
            M      D PF  +  N  +S    N   +L
Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDNHTEKL 200


>gi|220910548|ref|YP_002485859.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219867159|gb|ACL47498.1| Radical SAM domain protein [Cyanothece sp. PCC 7425]
          Length = 268

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 36/159 (22%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-------GIQGT 60
           E+F  +QGEG + G   +F RF+ C+L           +C FCD+           I+ +
Sbjct: 23  EVFSAIQGEGLNVGTRQIFIRFAQCDL-----------RCHFCDSAHTWYSRPTCQIEQS 71

Query: 61  KGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ---VDVPLIQALNK 109
            G R          +DQL   +++  + G        LTGGEPLLQ   +   L Q    
Sbjct: 72  PGQRDFQTYPNPVTIDQLLAWVKD--LHGPHLHDSISLTGGEPLLQSQFLQRLLPQLRET 129

Query: 110 RGFEIAVETNG--TIEPPQGIDWICVSPKAGCDLKIKGG 146
            G  + +ET G    E  Q + W+ +    G D+K+   
Sbjct: 130 IGLPLYLETGGHRPQELQQVLAWLDL---VGMDIKLPSA 165


>gi|294498043|ref|YP_003561743.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus megaterium QM B1551]
 gi|294347980|gb|ADE68309.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus megaterium QM B1551]
          Length = 243

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 24/144 (16%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   GR  +F R +GC+             C +CD+ F      K   
Sbjct: 7   VLEIFGPTIQGEGMVVGRKTMFVRTAGCDY-----------SCSWCDSAFTWDGSAKN-- 53

Query: 65  YNVDQLADLIEEQWITGEKEGRYC----VLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
            ++ QL    E+ W   ++ G  C     ++GG P L++    L++ L+  G + A+ET 
Sbjct: 54  -DIRQLT--AEQIWTELKEIGGECFDHVTISGGNPALIKAIGSLVELLHSHGVKAALETQ 110

Query: 120 GTIEPP--QGIDWICVSPKAGCDL 141
           G+        ID + +SPK    L
Sbjct: 111 GSRYQDWFLKIDDLTISPKPPSSL 134


>gi|257459146|ref|ZP_05624265.1| radical SAM domain protein [Campylobacter gracilis RM3268]
 gi|257443531|gb|EEV18655.1| radical SAM domain protein [Campylobacter gracilis RM3268]
          Length = 321

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 5/50 (10%)

Query: 8  EIFLTLQGEGGHAGRVAVFCRFSGCNLW-SGREQDRLSAQC----RFCDT 52
          E FL++QGEG +AGR+A F RF+GCNL  +G   +R+S +     R CDT
Sbjct: 5  ESFLSIQGEGKYAGRLAFFFRFAGCNLRCAGFGGERVSPKTGEILRGCDT 54


>gi|299541811|ref|ZP_07052134.1| coenzyme PQQ synthesis-like protein [Lysinibacillus fusiformis ZC1]
 gi|298725549|gb|EFI66190.1| coenzyme PQQ synthesis-like protein [Lysinibacillus fusiformis ZC1]
          Length = 242

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 24/144 (16%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F     
Sbjct: 1   MSKVPVIEIFGPTIQGEGMVVGQKTMFVRTAGCDY-----------SCSWCDSSFT---W 46

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEG----RYCVLTGGEPLLQVDVP-LIQALNKRGFEI 114
              G++ + Q+    EE W   ++ G     +  ++GG P L  ++  LI  L +   +I
Sbjct: 47  DGSGKHLIVQMT--AEEIWSELKRLGGNGFSFVTISGGNPALNPNLAELIAILKENDIKI 104

Query: 115 AVETNGTI--EPPQGIDWICVSPK 136
            VET G+   +    ID + +SPK
Sbjct: 105 GVETQGSRWQKWMYEIDELTISPK 128


>gi|295703393|ref|YP_003596468.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus megaterium DSM 319]
 gi|294801052|gb|ADF38118.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus megaterium DSM 319]
          Length = 243

 Score = 43.9 bits (102), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 24/144 (16%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   GR  +F R +GC+             C +CD+ F      K   
Sbjct: 7   VLEIFGPTIQGEGMVVGRKTMFVRTAGCDY-----------SCSWCDSAFTWDGSAKN-- 53

Query: 65  YNVDQLADLIEEQWITGEKEGRYC----VLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
            ++ QL    E+ W   ++ G  C     ++GG P L++    L++ L+  G + A+ET 
Sbjct: 54  -DIRQLT--AEQIWTELKEIGGECFDHVTISGGNPALIKAIGSLVELLHSHGVKAALETQ 110

Query: 120 GTIEPP--QGIDWICVSPKAGCDL 141
           G+        ID + +SPK    L
Sbjct: 111 GSRYQDWFLKIDDLTISPKPPSSL 134


>gi|260430571|ref|ZP_05784544.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Citreicella sp. SE45]
 gi|260418600|gb|EEX11857.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Citreicella sp. SE45]
          Length = 235

 Score = 43.9 bits (102), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++      
Sbjct: 5   IAEIFGPTIQGEGALIGEPTVFVRTGGCDY-----------RCSWCDS-LHAVESRYRDT 52

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +     + + +E       +     L+GG P +Q   P+I      G+  A ET G++  
Sbjct: 53  WAAMSDSAVWDEVLRLSGGQPLTVSLSGGNPAIQDFAPVIARGRAAGYRFACETQGSVAR 112

Query: 125 P--QGIDWICVSPK 136
           P    +D + +SPK
Sbjct: 113 PWFAELDTLVLSPK 126


>gi|298694039|gb|ADI97261.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus subsp.
           aureus ED133]
 gi|302332420|gb|ADL22613.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 237

 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 84/212 (39%), Gaps = 24/212 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118
           +      +    ++ +E    G     +  ++GG P L   +  L+     +G   A+ET
Sbjct: 49  SAKSDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108

Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY--IGFDFERFSLQ 174
            G+   P    ID + +SPK          ++L  V  Q   S  N   + FD + +   
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVITQCVPSSLNLKVVVFDDKDYDFA 168

Query: 175 PM------DGPFLEENTNLAISYCFQNPKWRL 200
            M      D PF  +  N  +S    N   +L
Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDNHTEKL 200


>gi|253576603|ref|ZP_04853931.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844017|gb|EES72037.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 253

 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 16/135 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G+  +F R +GC+            +C +CD+ F    G+    
Sbjct: 17  VMEIFGPTVQGEGMVIGQKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAKEM 64

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI- 122
                 A+++ E    G     +  L+GG P LL     L++ L+  G  +AVET G+  
Sbjct: 65  IRRLTPAEILGELRDIGGDRFSHVTLSGGNPALLPQLASLVELLHAEGITVAVETQGSRW 124

Query: 123 -EPPQGIDWICVSPK 136
            +    +D + +SPK
Sbjct: 125 QDWLAEVDQVTLSPK 139


>gi|212639793|ref|YP_002316313.1| Organic radical activating enzyme [Anoxybacillus flavithermus WK1]
 gi|212561273|gb|ACJ34328.1| Organic radical activating enzyme [Anoxybacillus flavithermus WK1]
          Length = 240

 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 15/128 (11%)

Query: 12  TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
           T+QGEG   G+  +F R +GC+            +CR+CD+ F    G+           
Sbjct: 13  TIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSSFTW-DGSAKNEVKQMTAE 60

Query: 72  DLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEPP--QGI 128
           D+ ++    G     +  ++GG P LL+    LI  L +    I +ET G++       I
Sbjct: 61  DIWQQLKQLGGDRFNHVTISGGNPALLKGLRALISLLKEHNIRIGLETQGSVWQDWFYDI 120

Query: 129 DWICVSPK 136
           D + +SPK
Sbjct: 121 DDLTISPK 128


>gi|148264177|ref|YP_001230883.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146397677|gb|ABQ26310.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 250

 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 69/156 (44%), Gaps = 37/156 (23%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT------DFVGIQGTK 61
           E+F ++QGEG   G   +F R  GCN             C +CDT      +F  ++GT 
Sbjct: 10  ELFSSIQGEGMLVGLRQIFIRLCGCNF-----------TCNYCDTESNVSVEFCQMEGTP 58

Query: 62  GGR--------YNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVDVPLIQ---ALNK 109
           G R          +++L  LI   W  G     + + +TGGEPLL  +  L+Q    + +
Sbjct: 59  GRRDFIQVKNPVALERLTCLI-SGWQRGWPGIHHSISITGGEPLLHYE--LLQEWLPVLR 115

Query: 110 RGFEIAVETNGTI--EPPQGIDWICVSPKAGCDLKI 143
               I +ETNG +  E  Q I  I      G D+KI
Sbjct: 116 EFLPIYLETNGVLHKELSQVISHI---DHVGMDIKI 148


>gi|85707174|ref|ZP_01038261.1| hypothetical protein ROS217_16361 [Roseovarius sp. 217]
 gi|85668333|gb|EAQ23207.1| hypothetical protein ROS217_16361 [Roseovarius sp. 217]
          Length = 240

 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G+  VF R  GC+            +C +CD+        +   
Sbjct: 7   VSEIFGPTIQGEGALIGQPTVFVRTGGCDY-----------RCSWCDSLHAVESAYRETW 55

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
             +   A + E   ++G +      L+GG P +Q    LI   + +G+  A+ET G++  
Sbjct: 56  VPMSAEAVMAEVVRLSGGR-AIMVTLSGGNPAIQPLGALIDLGHAQGYRFAMETQGSVAR 114

Query: 125 P--QGIDWICVSPK 136
                +D + +SPK
Sbjct: 115 DWFAALDMLVLSPK 128


>gi|149203608|ref|ZP_01880577.1| radical activating protein [Roseovarius sp. TM1035]
 gi|149142725|gb|EDM30767.1| radical activating protein [Roseovarius sp. TM1035]
          Length = 240

 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G+  VF R  GC+            +C +CD+        +   
Sbjct: 7   VSEIFGPTIQGEGALIGQPTVFVRTGGCDY-----------RCVWCDSLHAVESAYRETW 55

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
             +     L E   ++G +      L+GG P +Q    LI   + RG+  A+ET G++  
Sbjct: 56  VPMSPEVVLAEVARLSGGRP-IMVTLSGGNPAIQPLGALIDLGHARGYRFAMETQGSVAR 114

Query: 125 P--QGIDWICVSPK 136
                +D + +SPK
Sbjct: 115 DWFAALDMLVLSPK 128


>gi|109947611|ref|YP_664839.1| hypothetical protein Hac_1076 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714832|emb|CAJ99840.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 230

 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 17/134 (12%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MKL  + E F +LQGEG   G+ ++F R  GCNL           +  F D   +G    
Sbjct: 1   MKL-PVVESFFSLQGEGQRIGKPSLFLRLGGCNLSC----KGFGCKTLFNDEILIGCDSL 55

Query: 61  KGGRYNVDQLADLIEEQ--------WITGEKEGRYCVLTGGEPLLQVDVPLIQAL----N 108
                   +  D   E          +T   +    +LTGGEP L  + P++ ++    +
Sbjct: 56  YAVHPKFKKSWDYYNEPKPLIERLVHLTPNHKNFDFILTGGEPSLYFNNPILTSVLEHFH 115

Query: 109 KRGFEIAVETNGTI 122
           ++   + VE+NG+I
Sbjct: 116 RKKIPLFVESNGSI 129


>gi|78222867|ref|YP_384614.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78194122|gb|ABB31889.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 250

 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 68/156 (43%), Gaps = 33/156 (21%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT------DFVGIQG 59
           + E+F ++QGEG   G   VF RF GCNL            C +CDT      +   ++ 
Sbjct: 8   LAEVFSSVQGEGMLIGLRQVFVRFRGCNL-----------TCDYCDTPTEITAEPCLVEQ 56

Query: 60  TKGGR--------YNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVDVPLIQALNKR 110
           T G R          +D++  LI + W  G     + + +TGGEPLL   V        R
Sbjct: 57  TPGRRDFVPTANPVALDRIVSLI-DGWQRGWPGVHHSISITGGEPLLSHTVLSAWLPELR 115

Query: 111 G-FEIAVETNGTIEPPQG--IDWICVSPKAGCDLKI 143
               + +ETNG +    G  ID I +    G D+KI
Sbjct: 116 NILPVYLETNGIMHSVLGLLIDHIDI---IGMDIKI 148


>gi|317011141|gb|ADU84888.1| hypothetical protein HPSA_04520 [Helicobacter pylori SouthAfrica7]
          Length = 251

 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 9/130 (6%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL     G E          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFGCETLLNDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQALNKRGFE--- 113
              K      ++ + LIE           +  +LTGGEP L  + P++ ++ +  +    
Sbjct: 60  PKFKTSWDYYNEPSSLIERLVNLAPSYKDFDFILTGGEPSLHFNNPILTSVLEHFYHKKI 119

Query: 114 -IAVETNGTI 122
            + VE+NG+I
Sbjct: 120 PLFVESNGSI 129


>gi|324325459|gb|ADY20719.1| radical SAM domain-containing protein [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 238

 Score = 43.5 bits (101), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 21/178 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           +   +       D+  E    G +   +  ++GG P L  ++  L+  L + G   A+ET
Sbjct: 49  SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169
            G+   +    ID I +SPK          Q+L     KL    +++    +  +DFE
Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMKTDFQKLDAMIQKLSGKDISLKVVVFDDYDFE 166


>gi|109947617|ref|YP_664845.1| hypothetical protein Hac_1082 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714838|emb|CAJ99846.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 251

 Score = 43.5 bits (101), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 17/134 (12%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MKL  + E F +LQGEG   G+ ++F R  GCNL           +  F D   +G    
Sbjct: 1   MKL-PVVESFFSLQGEGQRIGKPSLFLRLGGCNLSC----KGFGCKTLFNDEILIGCDSL 55

Query: 61  KGGRYNVDQLADLIEEQ--------WITGEKEGRYCVLTGGEPLLQVDVPLIQAL----N 108
                   +  D   E          +T   +    +LTGGEP L  + P++ ++    +
Sbjct: 56  YAVHPKFKKSWDYYNEPKPLIERLVHLTPNHKNFDFILTGGEPSLYFNNPILTSVLEHFH 115

Query: 109 KRGFEIAVETNGTI 122
           ++   + VE+NG+I
Sbjct: 116 RKKIPLFVESNGSI 129


>gi|167950638|ref|ZP_02537712.1| Radical SAM domain protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 136

 Score = 43.5 bits (101), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 23/126 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAG-RVAVFCRFSGCNLWSGREQDRL-SAQCRFCDTDFVGIQ 58
           M    I EIF +LQGE   AG   A+  R            +RL S    +CDT++    
Sbjct: 7   MARLRISEIFYSLQGESRTAGLSTALVLRL-----------NRLPSYVVSYCDTEY---- 51

Query: 59  GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVE 117
              GG +   +LA ++++   +  +  R CV TGGEPL Q   + L+ +L ++G E+++E
Sbjct: 52  AFSGGEWM--ELAAVLDQVERSAAR--RICV-TGGEPLAQTACIELLDSLLEQGCEVSLE 106

Query: 118 TNGTIE 123
           T+G ++
Sbjct: 107 TSGALD 112


>gi|47566230|ref|ZP_00237258.1| Organic radical activating enzyme [Bacillus cereus G9241]
 gi|47556783|gb|EAL15114.1| Organic radical activating enzyme [Bacillus cereus G9241]
          Length = 238

 Score = 43.5 bits (101), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 21/178 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           +   +       D+  E    G +   +  ++GG P L  ++  L+  L + G   A+ET
Sbjct: 49  SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169
            G+   +    ID I +SPK          Q+L     KL    +++    +  +DFE
Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMKTDFQKLDAIIQKLSGKDISLKVVVFDDYDFE 166


>gi|119386888|ref|YP_917943.1| radical SAM domain-containing protein [Paracoccus denitrificans
           PD1222]
 gi|119377483|gb|ABL72247.1| preQ(0) biosynthesis protein QueE [Paracoccus denitrificans PD1222]
          Length = 235

 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+        +   
Sbjct: 5   IAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCVWCDSLHAVESSHRHEW 53

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
             +   A   E + ++G +      L+GG P +Q   PLI    ++G+  A ET G++  
Sbjct: 54  RPMSAEAVWAEVRRLSGGQP-LTVSLSGGNPAIQDFTPLIALGREQGYRFACETQGSVAQ 112

Query: 125 P--QGIDWICVSPK 136
           P    +  + +SPK
Sbjct: 113 PWFAELSTLVLSPK 126


>gi|52079923|ref|YP_078714.1| QueE [Bacillus licheniformis ATCC 14580]
 gi|52785294|ref|YP_091123.1| YkvL [Bacillus licheniformis ATCC 14580]
 gi|319646260|ref|ZP_08000490.1| YkvL protein [Bacillus sp. BT1B_CT2]
 gi|52003134|gb|AAU23076.1| QueE [Bacillus licheniformis ATCC 14580]
 gi|52347796|gb|AAU40430.1| YkvL [Bacillus licheniformis ATCC 14580]
 gi|317392010|gb|EFV72807.1| YkvL protein [Bacillus sp. BT1B_CT2]
          Length = 243

 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 18/136 (13%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G+    
Sbjct: 7   VLEIFGPTVQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAKKD 54

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122
                  ++ E     G     +  ++GG P L  Q+D  LI  L + G   A+ET GT 
Sbjct: 55  IKWMTAEEVYESLKDIGGNAFSHVTISGGNPALLKQLD-GLISLLKENGIRTALETQGTF 113

Query: 123 EPP--QGIDWICVSPK 136
                 GID + +SPK
Sbjct: 114 YQDWFTGIDDLTISPK 129


>gi|163939249|ref|YP_001644133.1| radical SAM domain-containing protein [Bacillus weihenstephanensis
           KBAB4]
 gi|163861446|gb|ABY42505.1| Radical SAM domain protein [Bacillus weihenstephanensis KBAB4]
          Length = 238

 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 16/140 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           +   +       D+  E    G +   +  ++GG P+L  ++  L+  L + G   AVET
Sbjct: 49  SAKDQIKQMTPEDIWNELVEIGGENFSHVTISGGNPVLLKNMQFLLSILKENGMRTAVET 108

Query: 119 NGTI--EPPQGIDWICVSPK 136
            G+   +    ID + +SPK
Sbjct: 109 QGSKWQDWLLQIDEVTISPK 128


>gi|258511917|ref|YP_003185351.1| Radical SAM domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478643|gb|ACV58962.1| Radical SAM domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 253

 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 23/121 (19%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           EIF T++GEG  AG    F R   CNL           +C +CDT +            +
Sbjct: 32  EIFETVEGEGTRAGFPTTFVRVFHCNL-----------RCTWCDTPYSYAPERPAFHATL 80

Query: 68  DQLADLIEE-QWITGEKEGRYCVLTGGEPLLQVDVP--LIQALN--KRGFEIAVETNGTI 122
            ++A+ +E   W           LTGGEPL+       LI+A+       ++ VETNG I
Sbjct: 81  REIAEQVEAFGWPN-------VCLTGGEPLIHRHKSQLLIEAIAGIPSVRDVHVETNGAI 133

Query: 123 E 123
           +
Sbjct: 134 D 134


>gi|217033120|ref|ZP_03438583.1| hypothetical protein HPB128_8g11 [Helicobacter pylori B128]
 gi|298736112|ref|YP_003728637.1| 6-pyruvoyltetrahydropterin 2'-reductase [Helicobacter pylori B8]
 gi|216945163|gb|EEC23856.1| hypothetical protein HPB128_8g11 [Helicobacter pylori B128]
 gi|298355301|emb|CBI66173.1| 6-pyruvoyltetrahydropterin 2'-reductase [Helicobacter pylori B8]
          Length = 251

 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 17/134 (12%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MKL  + E F +LQGEG + G+ ++F R  GCNL         + +  F D    G    
Sbjct: 1   MKL-PVVESFFSLQGEGKNIGKPSLFLRLGGCNLSC----KGFNCKTPFNDEILTGCDSL 55

Query: 61  KGGRYNVDQLAD-------LIEE-QWITGEKEGRYCVLTGGEPLLQVDVPL----IQALN 108
                   +  D       LIE  + +T   +    +LTGGEP L  + P+    ++   
Sbjct: 56  YAVHPKFKETWDYYNDPKPLIERLEGLTPNYKHFDFILTGGEPSLYFNNPILISVLEHFY 115

Query: 109 KRGFEIAVETNGTI 122
           ++   + VE+NG+I
Sbjct: 116 RKKIPLFVESNGSI 129


>gi|14590526|ref|NP_142594.1| hypothetical protein PH0635 [Pyrococcus horikoshii OT3]
 gi|3257042|dbj|BAA29725.1| 254aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 254

 Score = 43.1 bits (100), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 38/139 (27%)

Query: 6   IKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-FVGIQG 59
           + E+F + QGEGG       GR  +F RF+GC+L           +C +CD+  F+    
Sbjct: 6   LAEVFNSWQGEGGSVPGSAFGRRQIFVRFAGCDL-----------RCIWCDSSQFIDASK 54

Query: 60  TK---------GGRY-------NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--V 101
            K          GR+       ++D++ D I  +  TG+        TGGEP LQ++   
Sbjct: 55  VKKWRIEVEPFSGRFEYRENPASIDEVVDAI-LKLDTGDLHS--ISYTGGEPTLQIEGLY 111

Query: 102 PLIQALNKRGFEIAVETNG 120
            L++ +   GF+  +ET+G
Sbjct: 112 ILMERMKGLGFDNFLETHG 130


>gi|294496219|ref|YP_003542712.1| radical SAM protein [Methanohalophilus mahii DSM 5219]
 gi|292667218|gb|ADE37067.1| Radical SAM domain protein [Methanohalophilus mahii DSM 5219]
          Length = 239

 Score = 43.1 bits (100), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 67/154 (43%), Gaps = 29/154 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-----DFV 55
           M+   + EIF  +QGEG + G    F RF GCNL            C +CDT     D  
Sbjct: 1   METKPVSEIFCAVQGEGPYVGVRQAFVRFVGCNL-----------DCSYCDTPLDEPDHC 49

Query: 56  GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV------LTGGEPLLQVDVPLIQALNK 109
             +   G     ++L+ ++    I  E+  R  V      LTGGEPLL  +   I+ L+ 
Sbjct: 50  LFEKVPGSG-EFEKLSPMLCASDI--EERTRAFVNLHSVSLTGGEPLLHAE--FIRGLDL 104

Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143
               + +ETN T+     I    V   AG D+K+
Sbjct: 105 PA-PVYLETNMTLPEKAAIVKDSVDYVAG-DVKL 136


>gi|224475851|ref|YP_002633457.1| putative organic radical activating enzyme [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222420458|emb|CAL27272.1| putative organic radical activating enzyme [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 237

 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 26/145 (17%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+             C +CD+ F     
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------HCSWCDSKFTWDGS 49

Query: 60  TKGGRYNVDQLADLIEEQWITGEKE--GRY---CVLTGGEPLLQVDV-PLIQALNKRGFE 113
            K      DQ+  +  E+     KE  G Y     ++GG P L   +  L+     +  E
Sbjct: 50  AK------DQIEMMTAEEIYHQLKEVGGDYFNHVTISGGNPALIKGIQELVDLFEDKNIE 103

Query: 114 IAVETNGTIEPP--QGIDWICVSPK 136
            A+ET G+   P  + I+ + +SPK
Sbjct: 104 TALETQGSRYQPWMRQINDLTISPK 128


>gi|57168667|ref|ZP_00367799.1| radical SAM domain protein, putative [Campylobacter coli RM2228]
 gi|57019948|gb|EAL56628.1| radical SAM domain protein, putative [Campylobacter coli RM2228]
          Length = 224

 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 7/103 (6%)

Query: 28  RFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           RF+GCN      G +  +     + CDT            Y +   ++L +      +  
Sbjct: 2   RFAGCNFNCSGFGVKLIKNGKTLKGCDTIRAVFTKEFNEEYEILNASELFKRVLDLKKDF 61

Query: 85  GRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNGTIE 123
               V+TGGEPL+  + P     IQAL K  FE+  E+NG+IE
Sbjct: 62  NPIVVITGGEPLIHHENPEFIDFIQALLKNNFEVHFESNGSIE 104


>gi|154173832|ref|YP_001407349.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Campylobacter curvus 525.92]
 gi|112802456|gb|EAT99800.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Campylobacter curvus 525.92]
          Length = 225

 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 28/128 (21%)

Query: 19  HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           + GRVA    F+GCN+           +C +C + D V       G+ + ++  + ++ +
Sbjct: 16  YPGRVAAIVWFAGCNM-----------RCAYCYNIDVV----LSRGKLSAEEFCEFLDRR 60

Query: 78  WITGEKEGRYCVLTGGE-PLLQVDVPLIQALNKRGFEIAVETNGTIEP-------PQGID 129
              G+  G   V +GGE  L Q  +PL + + KRGF + V+TNG+  P          ID
Sbjct: 61  --IGKLSG--IVFSGGECTLSQSFLPLAREVKKRGFALKVDTNGSNLPVLKEAISQNLID 116

Query: 130 WICVSPKA 137
           +I +  KA
Sbjct: 117 YIALDFKA 124


>gi|56698570|ref|YP_168947.1| radical SAM domain-containing protein [Ruegeria pomeroyi DSS-3]
 gi|56680307|gb|AAV96973.1| radical SAM domain protein [Ruegeria pomeroyi DSS-3]
          Length = 239

 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 52/127 (40%), Gaps = 21/127 (16%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    I EIF  T+QGEG   G   VF R  GC+            +C +CD+    +  
Sbjct: 1   MTTLRIAEIFGPTIQGEGAVIGAPTVFVRAGGCDY-----------RCSWCDS----LHA 45

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT----GGEPLLQVDVPLIQALNKRGFEIA 115
                Y     A   E+ W    +      LT    GG P +Q   PLI+    +G+  A
Sbjct: 46  VDSA-YRDTWTAMTTEQVWAEVARLSGGVPLTVSLSGGNPAIQDFGPLIEMGKAQGYRFA 104

Query: 116 VETNGTI 122
           +ET G++
Sbjct: 105 LETQGSV 111


>gi|289667003|ref|ZP_06488078.1| putative radical activating enzyme [Xanthomonas campestris pv.
          musacearum NCPPB4381]
          Length = 90

 Score = 42.7 bits (99), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 22/91 (24%)

Query: 6  IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
          I EIFL+LQGE   AG   VF R +GC L           +C +CDT +       GG +
Sbjct: 20 ITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAY----AFHGGEW 64

Query: 66 N-VDQLADLIEEQWITGEKEGRYCVLTGGEP 95
          + +D +   +    +      R+  +TGG P
Sbjct: 65 HEIDAIVAEVARHGV------RHVCVTGGPP 89


>gi|315230412|ref|YP_004070848.1| queuosine biosynthesis QueE-like protein [Thermococcus barophilus
           MP]
 gi|315183440|gb|ADT83625.1| queuosine biosynthesis QueE-like protein [Thermococcus barophilus
           MP]
          Length = 255

 Score = 42.7 bits (99), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 16/128 (12%)

Query: 6   IKEIFLTLQGEGGHA-----GRVAVFCRFSGCNL---WSGREQ---DRLSAQCRFCDTDF 54
           + EIF + QGEGG       GR  +F RF+GC+L   W    Q        Q R+    F
Sbjct: 7   LAEIFNSWQGEGGSVEGSAFGRRQIFVRFAGCDLRCVWCDSRQFIDASKVLQWRYEIEPF 66

Query: 55  VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGF 112
            G    K     +D++ D+I     TG+        TGGEP LQ+     L++  ++ GF
Sbjct: 67  SGEFKYKPNPATLDEVVDVI-LSLDTGDVHS--ISYTGGEPTLQIKPLKALMEKSSELGF 123

Query: 113 EIAVETNG 120
           +  +ET+G
Sbjct: 124 KNFLETHG 131


>gi|152974870|ref|YP_001374387.1| radical SAM domain-containing protein [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023622|gb|ABS21392.1| Radical SAM domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 238

 Score = 42.7 bits (99), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 28/146 (19%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F     
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTWDGS 49

Query: 60  TKGGRYNVDQLADLI-EEQW-----ITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGF 112
            K      DQ+  +  EE W     I GE    +  ++GG P LL+    L++ L +   
Sbjct: 50  AK------DQIRQMTPEEIWKELIEIGGEN-FSHVTISGGNPVLLKHMKELLERLKENNI 102

Query: 113 EIAVETNGTI--EPPQGIDWICVSPK 136
             A+ET G+   E    ID I +SPK
Sbjct: 103 RTAIETQGSKWQEWLLDIDEITISPK 128


>gi|119513185|ref|ZP_01632233.1| hypothetical protein N9414_13008 [Nodularia spumigena CCY9414]
 gi|119462172|gb|EAW43161.1| hypothetical protein N9414_13008 [Nodularia spumigena CCY9414]
          Length = 265

 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 40/160 (25%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-------GIQGT 60
           E+F  +QGEG + G   +F RF+ C+L           +C FCD+           I+ T
Sbjct: 15  EVFSAIQGEGLNVGTRQLFIRFALCDL-----------RCHFCDSAHTWNAPATCRIELT 63

Query: 61  KGGR-----YNVDQLADLIEEQWITGEKEGRYCV-----LTGGEPLLQVD-----VPLIQ 105
            G R      N   L  LI  QW+  E++   C+     LTGGEPLL        +P ++
Sbjct: 64  PGLRDFEIHSNPVSLPILI--QWV--ERQNLPCLHDSISLTGGEPLLHAAFLKEFLPQVR 119

Query: 106 ALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
           +L      I +E+ G   P Q    +      G DLK+  
Sbjct: 120 SLT--NLPIYLESGGH-RPEQLAMVLPYLDSVGMDLKLPS 156


>gi|254713614|ref|ZP_05175425.1| Radical SAM domain protein [Brucella ceti M644/93/1]
 gi|254716032|ref|ZP_05177843.1| Radical SAM domain protein [Brucella ceti M13/05/1]
 gi|261217800|ref|ZP_05932081.1| radical SAM domain-containing protein [Brucella ceti M13/05/1]
 gi|261321352|ref|ZP_05960549.1| radical SAM domain-containing protein [Brucella ceti M644/93/1]
 gi|260922889|gb|EEX89457.1| radical SAM domain-containing protein [Brucella ceti M13/05/1]
 gi|261294042|gb|EEX97538.1| radical SAM domain-containing protein [Brucella ceti M644/93/1]
          Length = 243

 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 6   IKEIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++      
Sbjct: 9   ISEIFSPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 56

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++  
Sbjct: 57  WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVAK 116

Query: 125 P--QGIDWICVSPK 136
                +D + +SPK
Sbjct: 117 DWFSRLDTLVLSPK 130


>gi|254718024|ref|ZP_05179835.1| Radical SAM domain protein [Brucella sp. 83/13]
 gi|265982972|ref|ZP_06095707.1| radical SAM domain-containing protein [Brucella sp. 83/13]
 gi|306839805|ref|ZP_07472606.1| Radical SAM domain protein [Brucella sp. NF 2653]
 gi|264661564|gb|EEZ31825.1| radical SAM domain-containing protein [Brucella sp. 83/13]
 gi|306405160|gb|EFM61438.1| Radical SAM domain protein [Brucella sp. NF 2653]
          Length = 247

 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++      
Sbjct: 13  ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 60

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++  
Sbjct: 61  WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIEHGKAEGYRFALETQGSVAK 120

Query: 125 P--QGIDWICVSPK 136
                +D + +SPK
Sbjct: 121 DWFSRLDTLVLSPK 134


>gi|118592129|ref|ZP_01549523.1| organic-radical-activating protein [Stappia aggregata IAM 12614]
 gi|118435425|gb|EAV42072.1| organic-radical-activating protein [Stappia aggregata IAM 12614]
          Length = 242

 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G+  VF R  GC+            +C +CDT        +   
Sbjct: 8   VSEIFGPTIQGEGALIGQPTVFVRTGGCDY-----------RCSWCDTLHAVDSAHRDEW 56

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
             +   A L++ + ++G        L+GG P +Q    LI    K G+  A+ET G++  
Sbjct: 57  CPMTPQAILMQVEILSGGNP-LTVSLSGGNPAIQPLGGLITLGRKEGYRFALETQGSLAK 115

Query: 125 P--QGIDWICVSPK 136
                +D + +SPK
Sbjct: 116 DWFADLDVLTLSPK 129


>gi|254700612|ref|ZP_05162440.1| Radical SAM domain protein [Brucella suis bv. 5 str. 513]
 gi|261751121|ref|ZP_05994830.1| radical SAM domain-containing protein [Brucella suis bv. 5 str.
           513]
 gi|261740874|gb|EEY28800.1| radical SAM domain-containing protein [Brucella suis bv. 5 str.
           513]
          Length = 251

 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++      
Sbjct: 17  ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 64

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++  
Sbjct: 65  WKPMSVEAIWHEVTTLSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVAK 124

Query: 125 P--QGIDWICVSPK 136
                +D + +SPK
Sbjct: 125 DWFSRLDTLVLSPK 138


>gi|150377056|ref|YP_001313652.1| radical SAM domain-containing protein [Sinorhizobium medicae
           WSM419]
 gi|150031603|gb|ABR63719.1| Radical SAM domain protein [Sinorhizobium medicae WSM419]
          Length = 245

 Score = 42.4 bits (98), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++ +    
Sbjct: 11  VSEIFGPTIQGEGVLIGLPTVFVRSGGCDY-----------RCSWCDS-LHAVESSYRHE 58

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI-- 122
           ++      + +E       E     L+GG P +Q    LI   ++ G+  A+ET G+I  
Sbjct: 59  WHAMSTEAVWQEIVRLSRGEAVMVSLSGGNPAIQPFGDLIGRGHRNGYRFALETQGSIAR 118

Query: 123 EPPQGIDWICVSPK 136
           E    +D + +SPK
Sbjct: 119 EWFAELDVLVLSPK 132


>gi|306843411|ref|ZP_07476012.1| Radical SAM domain protein [Brucella sp. BO1]
 gi|306276102|gb|EFM57802.1| Radical SAM domain protein [Brucella sp. BO1]
          Length = 247

 Score = 42.4 bits (98), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++      
Sbjct: 13  ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 60

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++  
Sbjct: 61  WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVAK 120

Query: 125 P--QGIDWICVSPK 136
                +D + +SPK
Sbjct: 121 DWFSRLDTLVLSPK 134


>gi|256059945|ref|ZP_05450130.1| Radical SAM domain protein [Brucella neotomae 5K33]
 gi|261323917|ref|ZP_05963114.1| radical SAM domain-containing protein [Brucella neotomae 5K33]
 gi|261299897|gb|EEY03394.1| radical SAM domain-containing protein [Brucella neotomae 5K33]
          Length = 251

 Score = 42.4 bits (98), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++      
Sbjct: 17  ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 64

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++  
Sbjct: 65  WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVAK 124

Query: 125 P--QGIDWICVSPK 136
                +D + +SPK
Sbjct: 125 DWFSRLDTLVLSPK 138


>gi|23502822|ref|NP_698949.1| radical activating enzyme [Brucella suis 1330]
 gi|62290822|ref|YP_222615.1| radical activating protein [Brucella abortus bv. 1 str. 9-941]
 gi|82700734|ref|YP_415308.1| proline-rich extensin:radical SAM family protein [Brucella
           melitensis biovar Abortus 2308]
 gi|161619892|ref|YP_001593779.1| radical SAM domain-containing protein [Brucella canis ATCC 23365]
 gi|163843996|ref|YP_001628400.1| radical SAM domain-containing protein [Brucella suis ATCC 23445]
 gi|225853410|ref|YP_002733643.1| radical SAM domain-containing protein [Brucella melitensis ATCC
           23457]
 gi|254694602|ref|ZP_05156430.1| Radical SAM domain protein [Brucella abortus bv. 3 str. Tulya]
 gi|254696227|ref|ZP_05158055.1| Radical SAM domain protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254704982|ref|ZP_05166810.1| Radical SAM domain protein [Brucella suis bv. 3 str. 686]
 gi|254731145|ref|ZP_05189723.1| Radical SAM domain protein [Brucella abortus bv. 4 str. 292]
 gi|256045575|ref|ZP_05448455.1| Radical SAM domain protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256158470|ref|ZP_05456368.1| Radical SAM domain protein [Brucella ceti M490/95/1]
 gi|256253889|ref|ZP_05459425.1| Radical SAM domain protein [Brucella ceti B1/94]
 gi|256263110|ref|ZP_05465642.1| radical SAM domain-containing protein [Brucella melitensis bv. 2
           str. 63/9]
 gi|256370376|ref|YP_003107887.1| queuosine biosynthesis protein QueE [Brucella microti CCM 4915]
 gi|260169391|ref|ZP_05756202.1| queuosine biosynthesis protein QueE [Brucella sp. F5/99]
 gi|260546089|ref|ZP_05821829.1| radical SAM domain-containing protein [Brucella abortus NCTC 8038]
 gi|260562886|ref|ZP_05833372.1| radical SAM domain-containing protein [Brucella melitensis bv. 1
           str. 16M]
 gi|260567544|ref|ZP_05838014.1| radical SAM domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|260758876|ref|ZP_05871224.1| radical SAM domain-containing protein [Brucella abortus bv. 4 str.
           292]
 gi|260760600|ref|ZP_05872943.1| radical SAM domain-containing protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|261214926|ref|ZP_05929207.1| radical SAM domain-containing protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|261221026|ref|ZP_05935307.1| radical SAM domain-containing protein [Brucella ceti B1/94]
 gi|261755683|ref|ZP_05999392.1| radical SAM domain-containing protein [Brucella suis bv. 3 str.
           686]
 gi|261758913|ref|ZP_06002622.1| radical SAM domain-containing protein [Brucella sp. F5/99]
 gi|265991999|ref|ZP_06104556.1| radical SAM domain-containing protein [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265996986|ref|ZP_06109543.1| radical SAM domain-containing protein [Brucella ceti M490/95/1]
 gi|23348846|gb|AAN30864.1| radical activating enzyme, putative [Brucella suis 1330]
 gi|62196954|gb|AAX75254.1| hypothetical radical activating enzyme [Brucella abortus bv. 1 str.
           9-941]
 gi|82616835|emb|CAJ11931.1| Proline-rich extensin:Radical SAM [Brucella melitensis biovar
           Abortus 2308]
 gi|161336703|gb|ABX63008.1| Radical SAM domain protein [Brucella canis ATCC 23365]
 gi|163674719|gb|ABY38830.1| Radical SAM domain protein [Brucella suis ATCC 23445]
 gi|225641775|gb|ACO01689.1| Radical SAM domain protein [Brucella melitensis ATCC 23457]
 gi|256000539|gb|ACU48938.1| queuosine biosynthesis protein QueE [Brucella microti CCM 4915]
 gi|260096196|gb|EEW80072.1| radical SAM domain-containing protein [Brucella abortus NCTC 8038]
 gi|260152902|gb|EEW87994.1| radical SAM domain-containing protein [Brucella melitensis bv. 1
           str. 16M]
 gi|260157062|gb|EEW92142.1| radical SAM domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|260669194|gb|EEX56134.1| radical SAM domain-containing protein [Brucella abortus bv. 4 str.
           292]
 gi|260671032|gb|EEX57853.1| radical SAM domain-containing protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260916533|gb|EEX83394.1| radical SAM domain-containing protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|260919610|gb|EEX86263.1| radical SAM domain-containing protein [Brucella ceti B1/94]
 gi|261738897|gb|EEY26893.1| radical SAM domain-containing protein [Brucella sp. F5/99]
 gi|261745436|gb|EEY33362.1| radical SAM domain-containing protein [Brucella suis bv. 3 str.
           686]
 gi|262551454|gb|EEZ07444.1| radical SAM domain-containing protein [Brucella ceti M490/95/1]
 gi|263003065|gb|EEZ15358.1| radical SAM domain-containing protein [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263093011|gb|EEZ17161.1| radical SAM domain-containing protein [Brucella melitensis bv. 2
           str. 63/9]
 gi|326409973|gb|ADZ67038.1| radical SAM domain-containing protein [Brucella melitensis M28]
          Length = 251

 Score = 42.4 bits (98), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++      
Sbjct: 17  ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 64

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++  
Sbjct: 65  WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVAK 124

Query: 125 P--QGIDWICVSPK 136
                +D + +SPK
Sbjct: 125 DWFSRLDTLVLSPK 138


>gi|256112302|ref|ZP_05453223.1| Radical SAM domain protein [Brucella melitensis bv. 3 str. Ether]
 gi|265993735|ref|ZP_06106292.1| radical SAM domain-containing protein [Brucella melitensis bv. 3
           str. Ether]
 gi|262764716|gb|EEZ10637.1| radical SAM domain-containing protein [Brucella melitensis bv. 3
           str. Ether]
          Length = 251

 Score = 42.4 bits (98), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++      
Sbjct: 17  ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 64

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++  
Sbjct: 65  WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVAK 124

Query: 125 P--QGIDWICVSPK 136
                +D + +SPK
Sbjct: 125 DWFSRLDTLVLSPK 138


>gi|225628173|ref|ZP_03786208.1| Radical SAM domain protein [Brucella ceti str. Cudo]
 gi|237816336|ref|ZP_04595329.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Brucella abortus str. 2308 A]
 gi|225616998|gb|EEH14045.1| Radical SAM domain protein [Brucella ceti str. Cudo]
 gi|237788403|gb|EEP62618.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Brucella abortus str. 2308 A]
 gi|326539690|gb|ADZ87905.1| radical SAM domain protein [Brucella melitensis M5-90]
          Length = 252

 Score = 42.4 bits (98), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++      
Sbjct: 18  ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 65

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++  
Sbjct: 66  WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVAK 125

Query: 125 P--QGIDWICVSPK 136
                +D + +SPK
Sbjct: 126 DWFSRLDTLVLSPK 139


>gi|163746924|ref|ZP_02154281.1| Radical SAM [Oceanibulbus indolifex HEL-45]
 gi|161380038|gb|EDQ04450.1| Radical SAM [Oceanibulbus indolifex HEL-45]
          Length = 235

 Score = 42.4 bits (98), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++      
Sbjct: 5   IAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDS-LHAVESQYRHT 52

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +      D+  +       +     L+GG P +Q   PLI+      +  A ET G+I  
Sbjct: 53  WAPMSSEDVWRKVRKLSGGQPLTVSLSGGNPAIQDFGPLIKMGKAADYRFACETQGSIAR 112

Query: 125 P--QGIDWICVSPK 136
           P    +D + +SPK
Sbjct: 113 PWFADLDTLVLSPK 126


>gi|291483909|dbj|BAI84984.1| hypothetical protein BSNT_02308 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 243

 Score = 42.0 bits (97), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 18/156 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G+    
Sbjct: 7   VLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAKKD 54

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122
                  ++  E    G     +  ++GG P L  Q+DV  I+ L +     A+ET GT+
Sbjct: 55  IRWMTAEEIFAELKDIGGDAFSHVTISGGNPALLKQLDV-FIELLKENNIRAALETQGTV 113

Query: 123 EPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156
                  ID + +SPK      +   Q+L  +   +
Sbjct: 114 YQDWFTLIDDLTISPKPPSSKMVTNFQKLDHILTSL 149


>gi|315645649|ref|ZP_07898773.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Paenibacillus vortex V453]
 gi|315279127|gb|EFU42437.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Paenibacillus vortex V453]
          Length = 224

 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 15/120 (12%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            GR  +F R +GC+            +C +CD+ F    G+     +     D+ +E + 
Sbjct: 3   VGRKTMFVRTAGCDY-----------RCSWCDSAFT-WDGSAKDSISHMSADDIWQELYR 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  L+GG P L   +  L+  L++ G  +AVET G+   +    +D + +SPK
Sbjct: 51  LGGERFDHVTLSGGNPALLSQLGSLVNELHRHGITVAVETQGSRWQDWLNEVDEVTISPK 110


>gi|254707503|ref|ZP_05169331.1| Radical SAM domain protein [Brucella pinnipedialis M163/99/10]
 gi|254708957|ref|ZP_05170768.1| Radical SAM domain protein [Brucella pinnipedialis B2/94]
 gi|256030484|ref|ZP_05444098.1| Radical SAM domain protein [Brucella pinnipedialis M292/94/1]
 gi|261314986|ref|ZP_05954183.1| radical SAM domain-containing protein [Brucella pinnipedialis
           M163/99/10]
 gi|261316456|ref|ZP_05955653.1| radical SAM domain-containing protein [Brucella pinnipedialis
           B2/94]
 gi|265987526|ref|ZP_06100083.1| radical SAM domain-containing protein [Brucella pinnipedialis
           M292/94/1]
 gi|261295679|gb|EEX99175.1| radical SAM domain-containing protein [Brucella pinnipedialis
           B2/94]
 gi|261304012|gb|EEY07509.1| radical SAM domain-containing protein [Brucella pinnipedialis
           M163/99/10]
 gi|264659723|gb|EEZ29984.1| radical SAM domain-containing protein [Brucella pinnipedialis
           M292/94/1]
          Length = 251

 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++      
Sbjct: 17  ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 64

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++  
Sbjct: 65  WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGTLIKHGKAEGYRFALETQGSVAK 124

Query: 125 P--QGIDWICVSPK 136
                +D + +SPK
Sbjct: 125 DWFSRLDTLVLSPK 138


>gi|148559581|ref|YP_001259791.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Brucella ovis ATCC 25840]
 gi|148370838|gb|ABQ60817.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Brucella ovis ATCC 25840]
          Length = 247

 Score = 42.0 bits (97), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++      
Sbjct: 13  ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 60

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++  
Sbjct: 61  WKPISVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVAK 120

Query: 125 P--QGIDWICVSPK 136
                +D + +SPK
Sbjct: 121 DWFSRLDTLVLSPK 134


>gi|154685784|ref|YP_001420945.1| YkvL [Bacillus amyloliquefaciens FZB42]
 gi|154351635|gb|ABS73714.1| YkvL [Bacillus amyloliquefaciens FZB42]
          Length = 243

 Score = 42.0 bits (97), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 26/140 (18%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G+    
Sbjct: 7   VLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAKKD 54

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122
                  D+  E    G     +  ++GG P L  Q+D  LI  L + G   A+ET GT+
Sbjct: 55  IRWMTAEDIYRELREIGGDAFSHVTISGGNPALLKQLDA-LILLLKEHGVRAALETQGTV 113

Query: 123 EPPQGIDW------ICVSPK 136
                 DW      + +SPK
Sbjct: 114 YQ----DWFTMINDLTISPK 129


>gi|294851212|ref|ZP_06791885.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Brucella sp.
           NVSL 07-0026]
 gi|294819801|gb|EFG36800.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Brucella sp.
           NVSL 07-0026]
          Length = 280

 Score = 42.0 bits (97), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++      
Sbjct: 46  ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 93

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++  
Sbjct: 94  WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVAK 153

Query: 125 P--QGIDWICVSPK 136
                +D + +SPK
Sbjct: 154 DWFSRLDTLVLSPK 167


>gi|229099948|ref|ZP_04230870.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus Rock3-29]
 gi|228683493|gb|EEL37449.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus Rock3-29]
          Length = 233

 Score = 42.0 bits (97), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 25/133 (18%)

Query: 12  TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
           T+QGEG   G+  +F R +GC+             C +CD+ F         +  V Q+A
Sbjct: 8   TIQGEGMVIGQKTMFIRTAGCDY-----------SCSWCDSAFT---WDGSAKEQVRQMA 53

Query: 72  DLIEEQW-----ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--E 123
              EE W     I GE    +  ++GG P+L  ++  L+  L + G   A+ET G+   E
Sbjct: 54  P--EEIWNELVEIGGEN-FSHVTISGGNPVLLKNIQFLLTVLKENGIRTAIETQGSKWQE 110

Query: 124 PPQGIDWICVSPK 136
               I+ + +SPK
Sbjct: 111 WLLQIEEVTISPK 123


>gi|218288587|ref|ZP_03492864.1| Radical SAM domain protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218241244|gb|EED08419.1| Radical SAM domain protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 250

 Score = 42.0 bits (97), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 53/123 (43%), Gaps = 27/123 (21%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           EIF T++GEG  AG    F R   CNL           +C +CDT +            +
Sbjct: 29  EIFETVEGEGTKAGFPTTFVRVFHCNL-----------RCTWCDTPYSYAPERPAFHATL 77

Query: 68  DQLADLIEE-QWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFE----IAVETNG 120
            ++A  +E   W           LTGGEPL+       LI+A+   G E    + +ETNG
Sbjct: 78  REIAQQVEAFGWPN-------VCLTGGEPLIHRHKSQLLIEAIA--GIEWVRDVHIETNG 128

Query: 121 TIE 123
            I+
Sbjct: 129 AID 131


>gi|226314170|ref|YP_002774066.1| queuosine biosynthesis protein [Brevibacillus brevis NBRC 100599]
 gi|226097120|dbj|BAH45562.1| putative queuosine biosynthesis protein [Brevibacillus brevis NBRC
           100599]
          Length = 239

 Score = 42.0 bits (97), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 20/140 (14%)

Query: 3   LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +  + EIF  T+QGEG   G+  +F R +GC+            +C +CD+ F       
Sbjct: 1   MIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCNWCDSAFT---WDG 46

Query: 62  GGRYNVDQLAD--LIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118
             R  + Q++   + EE    G     +  ++GG P L   +  LI  L + G   AVET
Sbjct: 47  SARDEIRQMSPEAVWEELTRLGGDRFSHVTISGGNPALLAGIGDLISLLKEHGIRTAVET 106

Query: 119 NGTIEPP--QGIDWICVSPK 136
            G+        ID I +SPK
Sbjct: 107 QGSKWQAWLPLIDDITLSPK 126


>gi|160942352|ref|ZP_02089660.1| hypothetical protein CLOBOL_07237 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434716|gb|EDP12483.1| hypothetical protein CLOBOL_07237 [Clostridium bolteae ATCC
           BAA-613]
          Length = 305

 Score = 41.6 bits (96), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 10/124 (8%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCN----LWSGREQDRLSAQCRFC-DTDFVGIQG 59
           SIK + +  + +  H GR    C+    +     W  RE   L + C  C +    G   
Sbjct: 49  SIKPVIMYKEDDCLHCGRCITACKRGAISPENKTWINRE---LCSGCGECVNACPAGALV 105

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVE 117
            KG   ++ Q+   +++   T  + G    L+GGEPL+Q +    L+QA   +G+  A+E
Sbjct: 106 LKGKTMSIQQVIRELKKDATTYRRSGGGITLSGGEPLMQYEFASELLQACKGQGWNTAIE 165

Query: 118 TNGT 121
           T G 
Sbjct: 166 TTGV 169


>gi|149916377|ref|ZP_01904897.1| radical activating protein [Roseobacter sp. AzwK-3b]
 gi|149809831|gb|EDM69683.1| radical activating protein [Roseobacter sp. AzwK-3b]
          Length = 242

 Score = 41.6 bits (96), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 25/171 (14%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G   VF R  GC+            +C +CD+        +   
Sbjct: 9   VSEIFGPTIQGEGALIGVPTVFVRTGGCDY-----------RCSWCDSLHAVDSAFRETW 57

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
             +   A + E + ++G +      L+GG P +Q    +I+  + RG+  A+ET G++  
Sbjct: 58  APMTPDAIMAEIEKLSGGRP-LLVSLSGGNPAIQPLGEVIRLGHTRGYGFALETQGSVAK 116

Query: 125 P--QGIDWICVSPK----------AGCDLKIKGGQELKLVFPQVNVSPENY 163
                +D + +SPK          A  D  I  GQ   +V   V     +Y
Sbjct: 117 DWFSELDMLVLSPKPPSSGMEVDWAAFDACIAAGQGADMVMKIVIFDETDY 167


>gi|308173345|ref|YP_003920050.1| QueE [Bacillus amyloliquefaciens DSM 7]
 gi|307606209|emb|CBI42580.1| QueE [Bacillus amyloliquefaciens DSM 7]
 gi|328553728|gb|AEB24220.1| QueE [Bacillus amyloliquefaciens TA208]
 gi|328911423|gb|AEB63019.1| queuosine biosynthesis protein QueE [Bacillus amyloliquefaciens
           LL3]
          Length = 243

 Score = 41.6 bits (96), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 59/140 (42%), Gaps = 26/140 (18%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G+    
Sbjct: 7   VLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAKKD 54

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122
                  D+  E    G     +  ++GG P L  Q+D  LI  L   G   A+ET GT+
Sbjct: 55  IRWMTAEDIYRELREIGGDAFSHVTISGGNPALLKQLDA-LILLLKDHGVRAALETQGTV 113

Query: 123 EPPQGIDW------ICVSPK 136
                 DW      + +SPK
Sbjct: 114 YQ----DWFTMINDLTISPK 129


>gi|307943818|ref|ZP_07659162.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Roseibium sp. TrichSKD4]
 gi|307773448|gb|EFO32665.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Roseibium sp. TrichSKD4]
          Length = 247

 Score = 41.6 bits (96), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 15/138 (10%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           K   I EIF  T+QGEG   G+  VF R  GC+            +C +CDT    +   
Sbjct: 9   KSIRISEIFGPTIQGEGALVGKPTVFVRTGGCDY-----------RCSWCDT-LHAVDAE 56

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
               +     A++  +             L+GG P +Q    LI     +G+  A+ET G
Sbjct: 57  YRHDWTPMSAAEIFTKVEELSGGIPLTVSLSGGNPAIQPLASLITLGKAKGYAFALETQG 116

Query: 121 TIEPP--QGIDWICVSPK 136
           ++       +D + +SPK
Sbjct: 117 SVVKDWFAELDVLTLSPK 134


>gi|303244776|ref|ZP_07331105.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
 gi|302484817|gb|EFL47752.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
          Length = 246

 Score = 41.6 bits (96), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 7/119 (5%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGC--NLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           I EIF ++ GEG   GR  +F RF GC  N     E  + +  CR  +    G       
Sbjct: 2   ISEIFSSIMGEGKFIGRRYIFVRFKGCPLNCIYCDEHVKDNLICRVEEIPGSGEFKEYDD 61

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
             + D+L D+I +       +      TGGEPLL  D      + L+  G++  +E+NG
Sbjct: 62  INDNDKLIDVINK---LKTPDLFAISFTGGEPLLYADKIKEYSKILHNLGYKTHLESNG 117


>gi|108563339|ref|YP_627655.1| hypothetical protein HPAG1_0914 [Helicobacter pylori HPAG1]
 gi|107837112|gb|ABF84981.1| hypothetical protein HPAG1_0914 [Helicobacter pylori HPAG1]
          Length = 251

 Score = 41.6 bits (96), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 9/130 (6%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF---CDTDFVGI 57
           MKL  + E F +LQGEG + G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKNIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPL----IQALNKRGF 112
              K      ++   LIE           +  +LTGGEP L  + P+    ++   ++  
Sbjct: 60  PKFKTSWDYYNEPKPLIERLVNLAPNYKHFDFILTGGEPSLYFNNPILISVLEHFYRQKI 119

Query: 113 EIAVETNGTI 122
            + VE+NG+I
Sbjct: 120 PLCVESNGSI 129


>gi|308063762|gb|ADO05649.1| hypothetical protein HPSAT_04565 [Helicobacter pylori Sat464]
          Length = 251

 Score = 41.6 bits (96), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 17/134 (12%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53
           MKL  + E F +LQGEG   G+ ++F R  GCNL        +    + L+     CD+ 
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTG----CDSL 55

Query: 54  FVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQVDVPL----IQALN 108
           +      K      ++   LIE  + +T   +    +LTGGEP L  + P+    ++   
Sbjct: 56  YAVHPKFKETWDYYNEPKSLIERLEDLTPNYKNFDFILTGGEPSLYFNNPILISVLEHFY 115

Query: 109 KRGFEIAVETNGTI 122
            +   + VE+NG+I
Sbjct: 116 HKKIPLFVESNGSI 129


>gi|15645550|ref|NP_207726.1| hypothetical protein HP0934 [Helicobacter pylori 26695]
 gi|2314068|gb|AAD07976.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 251

 Score = 41.6 bits (96), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 19/135 (14%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53
           MKL  + E F +LQGEG   G+ ++F R  GCNL        +    + L+     CD+ 
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTG----CDSL 55

Query: 54  FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107
           +      K      ++   LIE  E      K+  + +LTGGEP L  + P+    ++  
Sbjct: 56  YAVHPKFKTSWDYYNEPKPLIERLEDLAPNYKDFDF-ILTGGEPSLYFNNPILISVLEHF 114

Query: 108 NKRGFEIAVETNGTI 122
            ++   + VE+NG+I
Sbjct: 115 YRQKIPLCVESNGSI 129


>gi|223042809|ref|ZP_03612857.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus capitis SK14]
 gi|222443663|gb|EEE49760.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus capitis SK14]
          Length = 237

 Score = 41.6 bits (96), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 15/147 (10%)

Query: 12  TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
           T+QGEG   GR  +F R +GC+            +C +CD+ F    G+      +    
Sbjct: 13  TIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAKEDIRLLTAE 60

Query: 72  DLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPP--QGI 128
           ++ EE    G     +  ++GG P L   +  L+    ++    A+ET G+   P    I
Sbjct: 61  EIYEELLEVGGNHFNHVTISGGNPALIKGIQDLVDLFEEKNIYTALETQGSKFQPWMTQI 120

Query: 129 DWICVSPKAGCDLKIKGGQELKLVFPQ 155
           + + +SPK    +       L  V  Q
Sbjct: 121 NDLTISPKPPSSMMKPNLNTLDSVIDQ 147


>gi|254444448|ref|ZP_05057924.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198258756|gb|EDY83064.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 269

 Score = 41.2 bits (95), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 6/75 (8%)

Query: 50  CDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQAL 107
           C +  + I  T     Y++      I+ +    E      V+TGGEPLL  D+P L+  +
Sbjct: 67  CKSQLIPIPTTDAAENYDIKDCFKFIDSRIGLVES----AVITGGEPLLHHDLPALLAHI 122

Query: 108 NKRGFEIAVETNGTI 122
            KRG  + ++TNGT+
Sbjct: 123 KKRGLSVKLDTNGTL 137


>gi|89097396|ref|ZP_01170285.1| radical SAM domain protein [Bacillus sp. NRRL B-14911]
 gi|89087692|gb|EAR66804.1| radical SAM domain protein [Bacillus sp. NRRL B-14911]
          Length = 241

 Score = 41.2 bits (95), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 24/144 (16%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVMEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSSFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQW----ITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEI 114
           T  G+  + Q+    EE W      G +   +  ++GG P L  ++  LI  L K   ++
Sbjct: 49  T--GKELIRQMD--AEEIWNELKAIGGEGFSFVTISGGNPALLKNLDKLISLLKKENIQL 104

Query: 115 AVETNGTI--EPPQGIDWICVSPK 136
            +ET G+   +    ID + +SPK
Sbjct: 105 CLETQGSRWQDWFYSIDQLTISPK 128


>gi|314933021|ref|ZP_07840387.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus caprae C87]
 gi|313654340|gb|EFS18096.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus caprae C87]
          Length = 237

 Score = 41.2 bits (95), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 12  TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
           T+QGEG   GR  +F R +GC+            +C +CD+ F    G+      +    
Sbjct: 13  TIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAKEDIRLLTAE 60

Query: 72  DLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPP--QGI 128
           ++ EE    G     +  ++GG P L   +  L+    ++    A+ET G+   P    I
Sbjct: 61  EIYEELLEVGGNHFNHVTISGGNPALIKGIQDLVDLFEEKNIYTALETQGSKFQPWMTQI 120

Query: 129 DWICVSPK 136
           + + +SPK
Sbjct: 121 NDLTISPK 128


>gi|188527756|ref|YP_001910443.1| hypothetical protein HPSH_04915 [Helicobacter pylori Shi470]
 gi|188143996|gb|ACD48413.1| hypothetical protein HPSH_04915 [Helicobacter pylori Shi470]
          Length = 251

 Score = 41.2 bits (95), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 17/134 (12%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53
           MKL  + E F +LQGEG   G+ ++F R  GCNL        +    + L+     CD+ 
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTG----CDSL 55

Query: 54  FVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQVDVPL----IQALN 108
           +      K      ++   LIE  + +T   +    +LTGGEP L  + P+    ++   
Sbjct: 56  YAVHPKFKETWDYYNEPQSLIERLEDLTPNYKNFDFILTGGEPSLYFNNPILISVLEHFY 115

Query: 109 KRGFEIAVETNGTI 122
            +   + VE+NG+I
Sbjct: 116 HKKIPLFVESNGSI 129


>gi|149179805|ref|ZP_01858310.1| YkvL [Bacillus sp. SG-1]
 gi|148851997|gb|EDL66142.1| YkvL [Bacillus sp. SG-1]
          Length = 239

 Score = 41.2 bits (95), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 16/140 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M+   + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MRKIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118
           +      +    D+ EE    G     +  ++GG P L   +  L+    + G + A+ET
Sbjct: 49  SAKEDIRMLTALDIWEELREIGGNRFNHVTISGGNPALIAAIDDLLTVFKENGIKSALET 108

Query: 119 NGTI--EPPQGIDWICVSPK 136
            G+   +    ID + +SPK
Sbjct: 109 QGSRWQDWFLDIDELTLSPK 128


>gi|311067888|ref|YP_003972811.1| queuosine biosynthesis enzyme [Bacillus atrophaeus 1942]
 gi|310868405|gb|ADP31880.1| queuosine biosynthesis enzyme [Bacillus atrophaeus 1942]
          Length = 243

 Score = 41.2 bits (95), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 18/136 (13%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G+    
Sbjct: 7   VLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAKKD 54

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122
                  D+  E    G     +  ++GG P L  Q+D   I  L ++    A+ET GT+
Sbjct: 55  IRWMTAEDIYSELKEIGGDAFSHVTISGGNPALLKQLD-SFITLLKEQNIRTALETQGTV 113

Query: 123 --EPPQGIDWICVSPK 136
             E    ID + +SPK
Sbjct: 114 YQEWFTLIDDLTISPK 129


>gi|308183085|ref|YP_003927212.1| hypothetical protein HPPC_04700 [Helicobacter pylori PeCan4]
 gi|308065270|gb|ADO07162.1| hypothetical protein HPPC_04700 [Helicobacter pylori PeCan4]
          Length = 251

 Score = 41.2 bits (95), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 17/134 (12%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53
           MKL  + E F +LQGEG   G+ ++F R  GCNL        +    + L+     CD+ 
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTG----CDSL 55

Query: 54  FVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQVDVPL----IQALN 108
           +      K      ++   LIE  + +T   +    +LTGGEP L  + P+    ++   
Sbjct: 56  YAVHPKFKETWDYYNEPKSLIERLEDLTPNYKHFDFILTGGEPSLYFNNPILISVLEHFY 115

Query: 109 KRGFEIAVETNGTI 122
            +   + VE+NG+I
Sbjct: 116 HKKIPLFVESNGSI 129


>gi|15678091|ref|NP_275205.1| molybdenum cofactor biosynthesis A (MoaA) related protein
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621099|gb|AAB84569.1| molybdenum cofactor biosynthesis A (MoaA) related protein
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 250

 Score = 41.2 bits (95), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 10/97 (10%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
           +CR+C   F    G     ++ D++ADLI  Q I  E      ++ GGEP LQ D+P + 
Sbjct: 48  RCRYC---FFKPSGCMN--HSPDRIADLI--QRIRDETGVERVLIAGGEPTLQEDLPELT 100

Query: 106 ALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
            +    F + +  NGT    + + W+    +   DLK
Sbjct: 101 EILAGDFHVTISPNGT---RRDVLWMSTFHEVHVDLK 134


>gi|23100258|ref|NP_693725.1| coenzyme PQQ synthesis [Oceanobacillus iheyensis HTE831]
 gi|22778490|dbj|BAC14759.1| coenzyme PQQ synthesis [Oceanobacillus iheyensis HTE831]
          Length = 240

 Score = 41.2 bits (95), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 16/119 (13%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   GR  +F R +GC+             C +CD+ F    G++   
Sbjct: 5   VLEIFGPTIQGEGMVIGRKTMFVRTAGCDY-----------SCSWCDSKFTW-DGSEKDS 52

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGT 121
             + +  ++ +     G     +  ++GG P L  Q+D  L+  L++   E+A+ET G+
Sbjct: 53  IQLLEPEEVFDSLKDIGGNTFGHVTISGGNPALLKQID-GLVDLLHQHQIEVALETQGS 110


>gi|307823472|ref|ZP_07653701.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
 gi|307735457|gb|EFO06305.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
          Length = 366

 Score = 41.2 bits (95), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 13/101 (12%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
           +C FC  D++G    K  R +V  LAD + E    G K   Y     GEP+L  ++  I 
Sbjct: 51  RCTFCAVDYIGY---KAQRLDVKILADRLAEMGRLGVKSIMYA--GEGEPMLHKEINEIV 105

Query: 106 ALN-KRGFEIAVETNGTIEPPQGID-------WICVSPKAG 138
            L    G +++  TNGT+   + ++       WI VS  AG
Sbjct: 106 RLTVDAGIDVSFTTNGTLMNSRFVEQSLPLVSWIKVSLNAG 146


>gi|228475320|ref|ZP_04060044.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           hominis SK119]
 gi|314936991|ref|ZP_07844338.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus hominis subsp. hominis C80]
 gi|228270696|gb|EEK12110.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           hominis SK119]
 gi|313655610|gb|EFS19355.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus hominis subsp. hominis C80]
          Length = 238

 Score = 41.2 bits (95), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 18/177 (10%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G+    
Sbjct: 7   VLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAKDD 54

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
             +    D+ +     G  +  +  ++GG P L   +  L+    ++    A+ET G+  
Sbjct: 55  IELLTAQDIYDRLKEIGGNQFDHVTISGGNPALIKGIQDLVDLFEEKNIFTALETQGSKF 114

Query: 124 PP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY--IGFDFERFSLQPM 176
            P  + I+ + +SPK      +   + L  V  Q   S  N   + FD E +    M
Sbjct: 115 QPWMRQINDLTISPKPPSSNMVPNLEILDSVIEQCIPSTLNLKVVVFDKEDYQFAKM 171


>gi|289674681|ref|ZP_06495571.1| radical SAM family protein [Pseudomonas syringae pv. syringae
          FF5]
          Length = 76

 Score = 41.2 bits (95), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 20/90 (22%)

Query: 6  IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
          I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT     
Sbjct: 7  ITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT----- 50

Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
           +  L D++ +         RY  +TGG P
Sbjct: 51 -IQTLDDILGQ---VASYRPRYVCVTGGAP 76


>gi|208434836|ref|YP_002266502.1| hypothetical protein HPG27_882 [Helicobacter pylori G27]
 gi|208432765|gb|ACI27636.1| hypothetical protein HPG27_882 [Helicobacter pylori G27]
          Length = 251

 Score = 41.2 bits (95), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 19/135 (14%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53
           MKL  + E F +LQGEG   G+ ++F R  GCNL        +    + L+     CD+ 
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTG----CDSL 55

Query: 54  FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111
           +      K      ++   LIE  E      K   + +LTGGEP L  + P++ ++ +  
Sbjct: 56  YAVHPKFKTSWDYYNEPKPLIERLENLAPNYKHFDF-ILTGGEPSLYFNNPILLSVLEHF 114

Query: 112 FE----IAVETNGTI 122
           +     + VE+NG+I
Sbjct: 115 YHKKIPLFVESNGSI 129


>gi|254690112|ref|ZP_05153366.1| Radical SAM domain protein [Brucella abortus bv. 6 str. 870]
 gi|256258366|ref|ZP_05463902.1| Radical SAM domain protein [Brucella abortus bv. 9 str. C68]
 gi|260755651|ref|ZP_05867999.1| radical SAM domain-containing protein [Brucella abortus bv. 6 str.
           870]
 gi|260884676|ref|ZP_05896290.1| radical SAM domain-containing protein [Brucella abortus bv. 9 str.
           C68]
 gi|297247208|ref|ZP_06930926.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Brucella abortus bv. 5 str. B3196]
 gi|260675759|gb|EEX62580.1| radical SAM domain-containing protein [Brucella abortus bv. 6 str.
           870]
 gi|260874204|gb|EEX81273.1| radical SAM domain-containing protein [Brucella abortus bv. 9 str.
           C68]
 gi|297174377|gb|EFH33724.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Brucella abortus bv. 5 str. B3196]
          Length = 251

 Score = 41.2 bits (95), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++      
Sbjct: 17  ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDS-LHAVESRFRHE 64

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++  
Sbjct: 65  WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKFEGYRFALETQGSVAK 124

Query: 125 P--QGIDWICVSPK 136
                +D + +SPK
Sbjct: 125 DWFSRLDTLVLSPK 138


>gi|291287831|ref|YP_003504647.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884991|gb|ADD68691.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 229

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 25/136 (18%)

Query: 19  HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           + G ++    F+GCNL           +CR+C      +  +  G   +++    +E + 
Sbjct: 17  YPGVISSVAFFNGCNL-----------RCRYCHNP--ELVNSALGENRLEEFLSSLEGKD 63

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWIC---VS 134
           I G        ++GGEPL   D+P  ++ L  RGF + ++TNG+   P  ++ +C   ++
Sbjct: 64  IEG------VAVSGGEPLFLPDMPEFLRTLKDRGFLVKLDTNGSY--PGRLERVCGEGLA 115

Query: 135 PKAGCDLKIKGGQELK 150
                DLK     ++K
Sbjct: 116 DFVSVDLKAFNDSDVK 131


>gi|317180219|dbj|BAJ58005.1| hypothetical protein HPF32_0423 [Helicobacter pylori F32]
          Length = 251

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 21/136 (15%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF---------CD 51
           MKL  + E F +LQGEG   G+ ++F R  GCNL            C+          CD
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCK------GFNCKTILYDEILMGCD 53

Query: 52  TDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQVDVPL----IQA 106
           + +      K      ++   LIE  + +T   +    +LTGGEP L  + P+    ++ 
Sbjct: 54  SLYAVHPKFKETWDYYNEPKSLIERLEDLTPNYKNFDFILTGGEPSLYFNNPILISVLEH 113

Query: 107 LNKRGFEIAVETNGTI 122
              +   + VE+NG+I
Sbjct: 114 FYHKKIPLFVESNGSI 129


>gi|313673576|ref|YP_004051687.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940332|gb|ADR19524.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 230

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 27/131 (20%)

Query: 18  GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77
              G+VA      GCNL           +CR+C    + ++  K    +++++ D I+  
Sbjct: 16  NFTGKVACTVFTIGCNL-----------RCRYCYNKSLVLKTEKP--VDIEKIRDKIKTL 62

Query: 78  WITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT-------IEPPQGID 129
            +      +   +TGGEPLL   +   +  L   GFEI ++TNGT       I   + ID
Sbjct: 63  PL------KNIAITGGEPLLHYSLKDFLYFLKDSGFEIKLDTNGTFPERLQNILDKKLID 116

Query: 130 WICVSPKAGCD 140
           ++ V  KA  D
Sbjct: 117 YVAVDIKAFTD 127


>gi|226945710|ref|YP_002800783.1| Radical SAM protein [Azotobacter vinelandii DJ]
 gi|226720637|gb|ACO79808.1| Radical SAM protein [Azotobacter vinelandii DJ]
          Length = 193

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 21/101 (20%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            VF R +GC L           +C +CDT +    G       V  L+ ++E     G  
Sbjct: 3   TVFVRLTGCPL-----------RCGYCDTAYAFSGGA------VLPLSVILERVASYGP- 44

Query: 84  EGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
             RY  +TGGEPL Q + + L++ L   G+E+++ET+G  +
Sbjct: 45  --RYVCVTGGEPLAQPNSIELLRLLCDAGYEVSLETSGAFD 83


>gi|307308045|ref|ZP_07587763.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Sinorhizobium meliloti BL225C]
 gi|307319886|ref|ZP_07599309.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Sinorhizobium meliloti AK83]
 gi|306894426|gb|EFN25189.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Sinorhizobium meliloti AK83]
 gi|306901449|gb|EFN32053.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Sinorhizobium meliloti BL225C]
          Length = 245

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G   VF R  GC+            +C +CD+    +       
Sbjct: 11  VSEIFGPTIQGEGVLIGLPTVFVRSGGCDY-----------RCSWCDS-LHAVDSNYRHE 58

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +      ++ +E       E     L+GG P +Q    LI   +++G+  A+ET G++  
Sbjct: 59  WQTMSTEEVWQEIVRLSGGEAVMVSLSGGNPAIQPLGDLIGRGHEKGYRFALETQGSVAR 118

Query: 125 P--QGIDWICVSPK 136
                +D + +SPK
Sbjct: 119 DWFAALDVLVLSPK 132


>gi|237747112|ref|ZP_04577592.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
           HOxBLS]
 gi|229378463|gb|EEO28554.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
           HOxBLS]
          Length = 227

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 15/110 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-L 103
           +CR+C    +   G +GGRY   D LA L   Q   G  EG   V +GGEPLLQ  +P  
Sbjct: 38  RCRYCHNRHLLPTG-EGGRYLWQDVLAWLKTRQ---GLLEG--VVFSGGEPLLQKQLPEA 91

Query: 104 IQALNKRGFEIAVETNGTIEPPQG-----IDWICVSPKAGCD--LKIKGG 146
              L+++GFE+A+ T+G            I+W+ +  KA  D   +I GG
Sbjct: 92  ADQLHRQGFEVALHTSGVYPERLAKVLPLIEWVGLDIKAPFDEYREITGG 141


>gi|222082946|ref|YP_002542311.1| organic-radical-activating protein [Agrobacterium radiobacter K84]
 gi|221727625|gb|ACM30714.1| organic-radical-activating protein [Agrobacterium radiobacter K84]
          Length = 279

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G   VF R  GC+            +C +CDT    +      +
Sbjct: 45  VSEIFGPTIQGEGILIGLPTVFVRTGGCDY-----------RCSWCDT-LHAVDSDYRDQ 92

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +    + ++ ++       +     L+GG P +Q   PLI   +  G+  A+ET G++  
Sbjct: 93  WQPMSVDEIWQDVIRLSGGKPLAVSLSGGNPAIQPLGPLIARGHGEGYSFALETQGSVAK 152

Query: 125 P--QGIDWICVSPK 136
                +D + +SPK
Sbjct: 153 DWFADLDTLVLSPK 166


>gi|18311650|ref|NP_558317.1| coenzyme PQQ synthesis protein, conjectural [Pyrobaculum
          aerophilum str. IM2]
 gi|18159047|gb|AAL62499.1| coenzyme PQQ synthesis protein, conjectural [Pyrobaculum
          aerophilum str. IM2]
          Length = 222

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 11/49 (22%)

Query: 6  IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF 54
          + EIF +LQGEG + GR AVF R +GC +           +C +CDT +
Sbjct: 9  VLEIFASLQGEGINLGRPAVFVRLAGCPI-----------RCIYCDTKY 46


>gi|317182232|dbj|BAJ60016.1| hypothetical protein HPF57_0942 [Helicobacter pylori F57]
          Length = 251

 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 19/135 (14%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53
           MKL  + E F +LQGEG   G+ ++F R  GCNL        +    + L+     CD+ 
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTG----CDSL 55

Query: 54  FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107
           +      K      ++   LIE  E      K   + +LTGGEP L  + P+    ++  
Sbjct: 56  YAVHPKFKETWDYYNEPKSLIERLEDLAPNYKHFDF-ILTGGEPSLYFNNPILISVLEHF 114

Query: 108 NKRGFEIAVETNGTI 122
             +   + VE+NG+I
Sbjct: 115 YHKKIPLFVESNGSI 129


>gi|308062249|gb|ADO04137.1| hypothetical protein HPCU_04900 [Helicobacter pylori Cuz20]
          Length = 251

 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 19/135 (14%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53
           MKL  + E F +LQGEG   G+ ++F R  GCNL        +    + L+     CD+ 
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTG----CDSL 55

Query: 54  FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107
           +      K      ++   LIE  E      K   + +LTGGEP L  + P+    ++  
Sbjct: 56  YAVHPKFKETWDYYNEPKSLIERLEDLAPNYKHFDF-ILTGGEPSLYFNNPILISVLEHF 114

Query: 108 NKRGFEIAVETNGTI 122
             +   + VE+NG+I
Sbjct: 115 YHKKIPLFVESNGSI 129


>gi|295091670|emb|CBK77777.1| glycerol dehydratase, cobalamin-independent, small subunit
           [Clostridium cf. saccharolyticum K10]
          Length = 305

 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 4/107 (3%)

Query: 19  HAGRVAVFCRFSGCNLWSGREQDR-LSAQCRFCDTDF-VGIQGTKGGRYNVDQLADLIEE 76
           H GR A  CR    +  +    +R     C  C      G    KG +  V QL   +++
Sbjct: 63  HCGRCAAACRRKAISFDNKTFINREFCTGCGECANACPAGALVVKGKKMTVQQLIRELKK 122

Query: 77  QWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
              T  + G    L+GGEPL+Q +    L++A   +G++ A+ET G 
Sbjct: 123 DATTYRRSGGGITLSGGEPLVQYEFAAELLKACQSQGWDTAIETTGA 169


>gi|242372943|ref|ZP_04818517.1| organic radical-activating protein [Staphylococcus epidermidis
           M23864:W1]
 gi|242349427|gb|EES41028.1| organic radical-activating protein [Staphylococcus epidermidis
           M23864:W1]
          Length = 237

 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 12  TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
           T+QGEG   GR  +F R +GC+            +C +CD+ F    G+      +    
Sbjct: 13  TIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAKEDIRLLSAE 60

Query: 72  DLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPP--QGI 128
           ++ EE    G     +  ++GG P L   +  L+    ++    A+ET G+   P    I
Sbjct: 61  EIYEELREVGGDNFNHVTISGGNPALIKGIQDLVDLFEEKNIYTALETQGSKFQPWMTQI 120

Query: 129 DWICVSPK 136
           + + +SPK
Sbjct: 121 NDLTISPK 128


>gi|296329700|ref|ZP_06872185.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305674097|ref|YP_003865769.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296153198|gb|EFG94062.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305412341|gb|ADM37460.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 243

 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 18/156 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G+    
Sbjct: 7   VLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAKKD 54

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122
                  ++  E    G     +  ++GG P L  Q+D   I+ L +     A+ET GT+
Sbjct: 55  IRWMTAEEIFAELKDIGGDAFSHVTISGGNPALLKQLDA-FIELLKENNIRAALETQGTV 113

Query: 123 EPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156
                  ID + +SPK      +   Q+L  +   +
Sbjct: 114 YQDWFTLIDDLTISPKPPSSKMVTNFQKLDHILTSL 149


>gi|332158894|ref|YP_004424173.1| hypothetical protein PNA2_1254 [Pyrococcus sp. NA2]
 gi|331034357|gb|AEC52169.1| hypothetical protein PNA2_1254 [Pyrococcus sp. NA2]
          Length = 254

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 32/136 (23%)

Query: 6   IKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-FVGIQG 59
           + E+F + QGEGG       GR  +F RF+GC+L           +C +CD+  F+    
Sbjct: 6   LAEVFNSWQGEGGSVPGSAFGRRQIFVRFAGCDL-----------RCFYCDSSQFLSPLN 54

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVL-------------TGGEPLLQVD--VPLI 104
            K  R  ++  +   E +      E    V+             TGGEP LQ+     L+
Sbjct: 55  VKTWRVEIEPFSGKFEYKKNPASVEEVVKVVLSLDTGDIHSISYTGGEPTLQIKGLRILM 114

Query: 105 QALNKRGFEIAVETNG 120
             +   GF+  +ET+G
Sbjct: 115 DRMKSLGFDNFLETHG 130


>gi|16078438|ref|NP_389257.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221309238|ref|ZP_03591085.1| hypothetical protein Bsubs1_07606 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313566|ref|ZP_03595371.1| hypothetical protein BsubsN3_07547 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318488|ref|ZP_03599782.1| hypothetical protein BsubsJ_07481 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322761|ref|ZP_03604055.1| hypothetical protein BsubsS_07587 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321315129|ref|YP_004207416.1| queuosine biosynthesis enzyme [Bacillus subtilis BSn5]
 gi|81341926|sp|O31677|QUEE_BACSU RecName: Full=7-carboxy-7-deazaguanine synthase; Short=CDG
           synthase; AltName: Full=Queuosine biosynthesis protein
           queE
 gi|2633745|emb|CAB13247.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|320021403|gb|ADV96389.1| queuosine biosynthesis enzyme [Bacillus subtilis BSn5]
          Length = 243

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 18/156 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G+    
Sbjct: 7   VLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAKKD 54

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122
                  ++  E    G     +  ++GG P L  Q+D   I+ L +     A+ET GT+
Sbjct: 55  IRWMTAEEIFAELKDIGGDAFSHVTISGGNPALLKQLDA-FIELLKENNIRAALETQGTV 113

Query: 123 EPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156
                  ID + +SPK      +   Q+L  +   +
Sbjct: 114 YQDWFTLIDDLTISPKPPSSKMVTNFQKLDHILTSL 149


>gi|195952719|ref|YP_002121009.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932331|gb|ACG57031.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 358

 Score = 40.4 bits (93), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/113 (22%), Positives = 54/113 (47%), Gaps = 17/113 (15%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           +GR+ ++   + CNL            C FC +     +  +   ++ + + D++++   
Sbjct: 21  SGRIVIWNIINSCNL-----------SCIFCYSS--AKKAKQPSYFDKNNIKDIVKK--- 64

Query: 80  TGEKEGRYCVLTGGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQGIDWI 131
             +   ++ VL+GGEPLL  D+  + + L + G  +++ TNG +     I+ I
Sbjct: 65  LSDLNTKFVVLSGGEPLLYDDIYYVSELLREHGINVSLSTNGLLIDNDNIELI 117


>gi|296877199|ref|ZP_06901239.1| pyruvate formate-lyase activating enzyme [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431719|gb|EFH17526.1| pyruvate formate-lyase activating enzyme [Streptococcus
           parasanguinis ATCC 15912]
          Length = 258

 Score = 40.4 bits (93), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 59/143 (41%), Gaps = 13/143 (9%)

Query: 9   IFLTLQGEGGHAG---RVAVFCRFSGCNL---W-SGREQDRLSAQCRFCDTDFVGIQGTK 61
           I   +Q    H G   R  VF +  GC L   W S  E  R++ +            GT 
Sbjct: 7   IIFNIQHFSIHDGPGIRTTVFLK--GCPLRCPWCSNPESQRMNPEPML--DAVTKAPGTT 62

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119
           G    VD++ D + +     E+ G    L+GGE   Q +    L++A  +RG   A+ET 
Sbjct: 63  GQEKTVDEIIDEVMKDIDFYEESGGGMTLSGGEIFAQFEFAKALLKAAKERGLHTAIETT 122

Query: 120 GTIEPPQGIDWICVSPKAGCDLK 142
             +E  + ID I        DLK
Sbjct: 123 AFVEHEKFIDLIQYVDFIYTDLK 145


>gi|317178717|dbj|BAJ56505.1| hypothetical protein HPF30_0408 [Helicobacter pylori F30]
          Length = 251

 Score = 40.4 bits (93), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 19/135 (14%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53
           MKL  + E F +LQGEG   G+ ++F R  GCNL        +    + L+     CD+ 
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDETLTG----CDSL 55

Query: 54  FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107
           +      K       +   LIE  E      K   + +LTGGEP L  + P+    ++  
Sbjct: 56  YAVHPKFKETWDYYHEPKSLIERLEDLAPNYKNFDF-ILTGGEPSLYFNNPILISVLEHF 114

Query: 108 NKRGFEIAVETNGTI 122
             +   + VE+NG+I
Sbjct: 115 YHKKIPLFVESNGSI 129


>gi|323465121|gb|ADX77274.1| coenzyme PQQ synthesis-like protein [Staphylococcus
           pseudintermedius ED99]
          Length = 237

 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 40/209 (19%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDF-----------RCSWCDSKFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL----LQVDVPLIQALNKRGFEIA 115
           +      + +  +++ +    G     +  ++GG P     LQ  V L +A + R    A
Sbjct: 49  SMKDDIEMMEAEEILAQLRNIGGNRFNHVTISGGNPALIKGLQSFVDLCEANDIR---TA 105

Query: 116 VETNGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY-------IGF 166
           +ET G+   P  + I+ + +SPK       +    L  V  Q+++S  N          +
Sbjct: 106 LETQGSQFKPWMRQINDLTLSPKPPSSGMQQNLPRLDEVIEQLDISRINLKVVVFDDADY 165

Query: 167 DFER----------FSLQPMDGPFLEENT 185
           DF +          F LQ +  P+LEE+ 
Sbjct: 166 DFAKMIHQRYPDIPFYLQ-VGNPYLEEHV 193


>gi|317009590|gb|ADU80170.1| radical SAM domain-containing protein [Helicobacter pylori India7]
          Length = 251

 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 17/134 (12%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MKL  + E F +LQGEG   G+ ++F R  GCNL         + +  F D    G    
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSC----KGFNCKTPFNDEILTGCDSL 55

Query: 61  KGGRYNVDQLAD-------LIEEQWITGEKEGRY-CVLTGGEPLLQVDVPL----IQALN 108
                   +  D       LIE           +  +LTGGEP L  + P+    ++   
Sbjct: 56  YAVHPKFKETWDYYNDPKPLIERLVNLAPSYKDFDFILTGGEPSLYFNNPILLSVLEHFY 115

Query: 109 KRGFEIAVETNGTI 122
           ++   + VE+NG+I
Sbjct: 116 RKKIPLFVESNGSI 129


>gi|317177720|dbj|BAJ55509.1| hypothetical protein HPF16_0912 [Helicobacter pylori F16]
          Length = 251

 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 19/135 (14%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53
           MKL  + E F +LQGEG   G+ ++F R  GCNL        +    + L+     CD+ 
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTG----CDSL 55

Query: 54  FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107
           +      K      ++   LIE  E      K   + +LTGGEP L  + P+    ++  
Sbjct: 56  YAVHPKFKETWDYYNEPKSLIERLEDLAPNYKHFDF-ILTGGEPSLYFNNPILISVLEHF 114

Query: 108 NKRGFEIAVETNGTI 122
             +   + VE+NG+I
Sbjct: 115 YHKKIPLFVESNGSI 129


>gi|261839719|gb|ACX99484.1| hypothetical protein HPKB_0901 [Helicobacter pylori 52]
          Length = 251

 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 19/135 (14%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53
           MKL  + E F +LQGEG   G+ ++F R  GCNL        +    + L+     CD+ 
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTG----CDSL 55

Query: 54  FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107
           +      K      ++   LIE  E      K   + +LTGGEP L  + P+    ++  
Sbjct: 56  YAVHPKFKETWDYYNEPKSLIERLEDLAPNYKHFDF-ILTGGEPSLYFNNPILISVLEHF 114

Query: 108 NKRGFEIAVETNGTI 122
             +   + VE+NG+I
Sbjct: 115 YHKKIPLFVESNGSI 129


>gi|296272038|ref|YP_003654669.1| radical SAM domain-containing protein [Arcobacter nitrofigilis DSM
           7299]
 gi|296096213|gb|ADG92163.1| Radical SAM domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 249

 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 20/134 (14%)

Query: 3   LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNL----WSGREQDRLSAQCRFCDTDFVGI 57
           +  + EIF  T+QGEG + G  ++F RF  CN     ++   +     +   CD+ +   
Sbjct: 1   MLEVNEIFGPTIQGEGKYVGNPSIFIRFGKCNFRCEGFAVEYETPSGVKKCSCDSFYAVD 60

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEK--EGRY---CVLTGGEPLLQVDVPLIQALNK--- 109
              K      DQ   + + + I   K  E  Y    V+TGGEPLL       Q + K   
Sbjct: 61  PAFK------DQWHKMNKNEIINQVKKLEPSYKVDIVITGGEPLLYWKDEEFQEILKYYI 114

Query: 110 -RGFEIAVETNGTI 122
             G+++ +ETNG++
Sbjct: 115 SNGYKVTIETNGSL 128


>gi|150018872|ref|YP_001311126.1| glycyl-radical activating family protein [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905337|gb|ABR36170.1| glycyl-radical enzyme activating protein family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 306

 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 10/122 (8%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNL----WSGREQDRLSAQC-RFCDTDFVGIQGT 60
           IK + +       H GR    C+    ++    +  RE      +C   C T  + +   
Sbjct: 51  IKPVIMYQSANCIHCGRCISACKIGAISVNNKGFINREICTACGECSNVCPTSSLVL--- 107

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118
           KG +  ++Q+   +++  I   + G    L+GGEPL+Q D    L +A   +G+  A+ET
Sbjct: 108 KGKKMTIEQVIKELKKDAINYRRSGGGITLSGGEPLVQSDFSKELFKACKAQGWHTAIET 167

Query: 119 NG 120
            G
Sbjct: 168 TG 169


>gi|317012742|gb|ADU83350.1| hypothetical protein HPLT_04740 [Helicobacter pylori Lithuania75]
          Length = 251

 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 19/135 (14%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53
           MKL  + E F +LQGEG   G+ ++F R  GCNL        +    + L+     CD+ 
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILNDEILTG----CDSL 55

Query: 54  FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107
           +      K      +    LIE  E      K   + +LTGGEP L  + P+    ++  
Sbjct: 56  YAVHPKFKETWDYYNDPKPLIERLENLAPNYKHFDF-ILTGGEPSLYFNNPILISVLEHF 114

Query: 108 NKRGFEIAVETNGTI 122
            ++   + VE+NG+I
Sbjct: 115 YRKKIPLCVESNGSI 129


>gi|207091722|ref|ZP_03239509.1| hypothetical protein HpylHP_00921 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 251

 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 19/135 (14%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53
           MKL  + E F +LQGEG   G+ ++F R  GCNL        +    + L+     CD+ 
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTG----CDSL 55

Query: 54  FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107
           +      K      +    LIE  E      K   + +LTGGEP L  + P+    ++  
Sbjct: 56  YAVHPKFKTSWDYYNDPKPLIERLEDLAPNYKHFDF-ILTGGEPSLYFNNPILISVLEHF 114

Query: 108 NKRGFEIAVETNGTI 122
             +   + VE+NG+I
Sbjct: 115 YHKKIPLFVESNGSI 129


>gi|194337298|ref|YP_002019092.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309775|gb|ACF44475.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 223

 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 49/117 (41%), Gaps = 21/117 (17%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +I EIF ++QGE   AG    F R +GC              C  CDT +    G K G 
Sbjct: 7   NISEIFHSIQGESSFAGWPCAFIRLAGCG-----------HGCIGCDTAYAEHDGIKLGI 55

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
             V Q A       I          +TGGEPLLQ  V  L++ L     ++ +ET G
Sbjct: 56  EVVVQRALAFRAPLIE---------VTGGEPLLQPAVYSLMRQLCDLEQKVLLETGG 103


>gi|254361906|ref|ZP_04978039.1| hypothetical protein MHA_1513 [Mannheimia haemolytica PHL213]
 gi|153093447|gb|EDN74435.1| hypothetical protein MHA_1513 [Mannheimia haemolytica PHL213]
          Length = 55

 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 11/51 (21%)

Query: 4  YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF 54
          + I EIF +LQGEG + G  A+F RF  CNL            C +CDT++
Sbjct: 10 FPIVEIFESLQGEGFNTGMPAIFVRFGKCNL-----------TCPWCDTNY 49


>gi|36958586|gb|AAQ87054.1| ExsD protein [Sinorhizobium fredii NGR234]
          Length = 245

 Score = 40.0 bits (92), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 23/138 (16%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G   VF R  GC+            +C +CD+    +       
Sbjct: 11  VSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDS----LHAVDSA- 54

Query: 65  YNVDQLADLIEEQW--ITGEKEGRYCV--LTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           Y  +  A   +E W  +T    G+  +  L+GG P +Q    LI   +  G+  A+ET G
Sbjct: 55  YRDEWRAMTTDEVWSEVTQLSGGQPVMVSLSGGNPAIQPFGALIARGHAEGYRFALETQG 114

Query: 121 TIEPP--QGIDWICVSPK 136
           ++       +D + +SPK
Sbjct: 115 SVARDWFAELDMLVLSPK 132


>gi|227820048|ref|YP_002824019.1| radical SAM domain protein [Sinorhizobium fredii NGR234]
 gi|227339047|gb|ACP23266.1| radical SAM domain protein [Sinorhizobium fredii NGR234]
          Length = 242

 Score = 40.0 bits (92), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 23/138 (16%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G   VF R  GC+            +C +CD+    +       
Sbjct: 8   VSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDS----LHAVDSA- 51

Query: 65  YNVDQLADLIEEQW--ITGEKEGRYCV--LTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           Y  +  A   +E W  +T    G+  +  L+GG P +Q    LI   +  G+  A+ET G
Sbjct: 52  YRDEWRAMTTDEVWSEVTQLSGGQPVMVSLSGGNPAIQPFGALIARGHAEGYRFALETQG 111

Query: 121 TIEPP--QGIDWICVSPK 136
           ++       +D + +SPK
Sbjct: 112 SVARDWFAELDMLVLSPK 129


>gi|315586878|gb|ADU41259.1| radical SAM domain protein [Helicobacter pylori 35A]
          Length = 251

 Score = 40.0 bits (92), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 19/135 (14%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53
           MKL  + E F +LQGEG   G+ ++F R  GCNL        +    + L+     CD+ 
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTG----CDSL 55

Query: 54  FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107
           +      K      ++   LIE  E      K   + +LTGGEP L  + P+    ++  
Sbjct: 56  YAVHPKFKETWDYYNEPKSLIERLEDLAPNYKNFDF-ILTGGEPSLYFNNPILISVLEHF 114

Query: 108 NKRGFEIAVETNGTI 122
             +   + VE+NG+I
Sbjct: 115 YHKKIPLFVESNGSI 129


>gi|261838307|gb|ACX98073.1| hypothetical protein KHP_0871 [Helicobacter pylori 51]
          Length = 251

 Score = 40.0 bits (92), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 19/135 (14%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53
           MKL  + E F +LQGEG   G+ ++F R  GCNL        +    + L+     CD+ 
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTG----CDSL 55

Query: 54  FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107
           +      K      ++   LIE  E      K   + +LTGGEP L  + P+    ++  
Sbjct: 56  YAVHPKFKETWDYYNEPKSLIERLEDLAPNYKNFDF-ILTGGEPSLYFNNPILISVLEHF 114

Query: 108 NKRGFEIAVETNGTI 122
             +   + VE+NG+I
Sbjct: 115 YHKKIPLFVESNGSI 129


>gi|257052674|ref|YP_003130507.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Halorhabdus utahensis DSM 12940]
 gi|256691437|gb|ACV11774.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Halorhabdus utahensis DSM 12940]
          Length = 228

 Score = 40.0 bits (92), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 19/105 (18%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGG--RYNVDQLADLIEEQ 77
           GRVA     +GCNL           +C +C + + +       G    + D+   L++++
Sbjct: 16  GRVACAVFTAGCNL-----------RCPYCHNPELIEADSKHAGASTLSADEFFALLDDR 64

Query: 78  WITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
               +      V+TGGEP L  D+P  +  +  RGF++ ++TNGT
Sbjct: 65  EAVLDG----VVITGGEPTLHRDLPRFVSRIADRGFDVKLDTNGT 105


>gi|220931944|ref|YP_002508852.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Halothermothrix orenii H 168]
 gi|219993254|gb|ACL69857.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Halothermothrix orenii H 168]
          Length = 231

 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 24/116 (20%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA-DLIEEQWITGEKEGRYCV 89
           GCNL           +C +C    +     K    N+D ++ DL+ E     +K      
Sbjct: 26  GCNL-----------RCPYCHNSGL----VKNNNKNIDFISLDLLFEFLRRRKKLIDGVC 70

Query: 90  LTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT-------IEPPQGIDWICVSPKA 137
           +TGGEP LQ  + P I+ + K GF+I ++TNGT       +     ID+I +  KA
Sbjct: 71  ITGGEPTLQTGLEPFIRKIKKMGFKIKLDTNGTKPDLINKLVKENLIDYIAMDIKA 126


>gi|217033986|ref|ZP_03439409.1| hypothetical protein HP9810_883g56 [Helicobacter pylori 98-10]
 gi|216943619|gb|EEC23067.1| hypothetical protein HP9810_883g56 [Helicobacter pylori 98-10]
          Length = 251

 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 19/135 (14%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53
           MKL  + E F +LQGEG   G+ ++F R  GCNL        +    + L+     CD+ 
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILNDEILTG----CDSL 55

Query: 54  FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107
           +      K      ++   LIE  E      K   + +LTGGEP L  + P+    ++  
Sbjct: 56  YAVHPKFKETWDYYNEPKSLIERLEDLAPNYKNFDF-ILTGGEPSLYFNNPILISVLEHF 114

Query: 108 NKRGFEIAVETNGTI 122
             +   + VE+NG+I
Sbjct: 115 YHKKIPLFVESNGSI 129


>gi|254779534|ref|YP_003057640.1| hypothetical protein HELPY_0917 [Helicobacter pylori B38]
 gi|254001446|emb|CAX29441.1| Conserved hypothetical protein [Helicobacter pylori B38]
          Length = 251

 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 19/135 (14%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53
           MKL  + E F +LQGEG   G+ ++F R  GCNL        +    + L+     CD+ 
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILNDEILTG----CDSL 55

Query: 54  FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107
           +      K      +    LIE  E      K   + +LTGGEP L  + P+    ++  
Sbjct: 56  YAVHPKFKETWDYYNDPKPLIERLEDLAPNYKHFDF-ILTGGEPSLYFNNPILISVLEHF 114

Query: 108 NKRGFEIAVETNGTI 122
            ++   + VE+NG+I
Sbjct: 115 YRKKIPLFVESNGSI 129


>gi|15611935|ref|NP_223586.1| hypothetical protein jhp0868 [Helicobacter pylori J99]
 gi|4155435|gb|AAD06440.1| putative [Helicobacter pylori J99]
          Length = 251

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 17/134 (12%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF-------CDTD 53
           MKL  + E F +LQGEG   G+ ++F R  GCNL         + +  F       CD+ 
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNL----SCKGFNCKTLFNDEILTGCDSL 55

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQALNKRGF 112
           +      K      ++   LIE           +  +LTGGEP L  + P++ ++ +  +
Sbjct: 56  YAVHPKFKTSWDYYNEPKPLIERLVNLAPNYKDFDFILTGGEPSLYFNNPILLSVLEHFY 115

Query: 113 E----IAVETNGTI 122
                + VE+NG+I
Sbjct: 116 HKKIPLFVESNGSI 129


>gi|126651679|ref|ZP_01723882.1| radical SAM domain protein [Bacillus sp. B14905]
 gi|126591628|gb|EAZ85734.1| radical SAM domain protein [Bacillus sp. B14905]
          Length = 242

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 24/144 (16%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F     
Sbjct: 1   MSKVPVIEIFGPTIQGEGMVVGQKTMFVRTAGCDY-----------SCSWCDSAFT---W 46

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEG----RYCVLTGGEPLLQVDV-PLIQALNKRGFEI 114
              G++ + Q+     E W   ++ G     +  ++GG P L  ++  LI  L +   +I
Sbjct: 47  DGSGKHLIVQMT--AGEIWSELKRLGGHGFSFVTISGGNPALYPNLEALIAILKENDIKI 104

Query: 115 AVETNGTI--EPPQGIDWICVSPK 136
            VET G+        ID + +SPK
Sbjct: 105 GVETQGSRWQNWMYDIDELTISPK 128


>gi|308184717|ref|YP_003928850.1| hypothetical protein HPSJM_04750 [Helicobacter pylori SJM180]
 gi|308060637|gb|ADO02533.1| hypothetical protein HPSJM_04750 [Helicobacter pylori SJM180]
          Length = 251

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 23/137 (16%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW------SGREQDRLSAQCRFCDTDF 54
           MKL  + E F +LQGEG   G+ ++F R  GCNL            D +   C       
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVH 59

Query: 55  VGIQGTKGGRYN-----VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL----IQ 105
              Q T    YN     +++L +L         K+  + +LTGGEP L  + P+    ++
Sbjct: 60  PKFQ-TSWDYYNEPKPLIERLVNL-----APSYKDFDF-ILTGGEPSLYFNNPILLSVLE 112

Query: 106 ALNKRGFEIAVETNGTI 122
             + +   + VE+NG+I
Sbjct: 113 HFHHKKIPLFVESNGSI 129


>gi|325996217|gb|ADZ51622.1| Queuosine biosynthesis protein [Helicobacter pylori 2018]
 gi|325997811|gb|ADZ50019.1| Queuosine biosynthesis protein [Helicobacter pylori 2017]
          Length = 251

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 17/134 (12%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF-------CDTD 53
           MKL  + E F +LQGEG   G+ ++F R  GCNL         + +  F       CD+ 
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSC----KGFNCKTLFNDEILTGCDSL 55

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQALNKRGF 112
           +      K      ++   LIE           +  +LTGGEP L  + P++ ++ +  +
Sbjct: 56  YAVHPKFKTSWDYYNEPKPLIERLVNLAPNYKDFDFILTGGEPSLYFNNPILLSVLEHFY 115

Query: 113 E----IAVETNGTI 122
                + VE+NG+I
Sbjct: 116 HKKIPLFVESNGSI 129


>gi|319891709|ref|YP_004148584.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161405|gb|ADV04948.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 237

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 22/166 (13%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDF-----------RCSWCDSKFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL----LQVDVPLIQALNKRGFEIA 115
           +      + +  +++ +    G     +  ++GG P     LQ  V L +A + R    A
Sbjct: 49  SMKDDIEMMEAEEILAQLRNIGGNRFNHVTISGGNPALIKGLQSFVDLCEANDIR---TA 105

Query: 116 VETNGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
           +ET G+   P  + I+ + +SPK       +    L  V  Q+++S
Sbjct: 106 LETQGSQFKPWMRQINDLTLSPKPPSSGMQQNLPRLDEVIEQLDIS 151


>gi|254459192|ref|ZP_05072614.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Campylobacterales bacterium GD 1]
 gi|207084085|gb|EDZ61375.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Campylobacterales bacterium GD 1]
          Length = 234

 Score = 39.7 bits (91), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 17/100 (17%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
            +A    FSGCN+           +C +C      I  +  G Y +D++ + +  +    
Sbjct: 30  HLACIVWFSGCNM-----------RCDYCYNK--AIVFSNSGSYTIDEVLEFLHSRVNLL 76

Query: 82  EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           E      VL+GGE      V   +A+ K GF+I ++TNGT
Sbjct: 77  EA----VVLSGGEASSHDLVEFCKAVKKLGFKIKLDTNGT 112


>gi|307637623|gb|ADN80073.1| Queuosine Biosynthesis protein [Helicobacter pylori 908]
          Length = 251

 Score = 39.7 bits (91), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 17/134 (12%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRF-------CDTD 53
           MKL  + E F +LQGEG   G+ ++F R  GCNL         + +  F       CD+ 
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSC----KGFNCKTLFNDEILTGCDSL 55

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQALNKRGF 112
           +      K      ++   LIE           +  +LTGGEP L  + P++ ++ +  +
Sbjct: 56  YAVHPKFKTSWDYYNEPKPLIERLVNLAPNYKDFDFILTGGEPSLYFNNPILLSVLEHFY 115

Query: 113 E----IAVETNGTI 122
                + VE+NG+I
Sbjct: 116 HKKIPLFVESNGSI 129


>gi|16264809|ref|NP_437601.1| hypothetical protein SM_b20938 [Sinorhizobium meliloti 1021]
 gi|2808502|emb|CAA12532.1| ExsD protein [Sinorhizobium meliloti]
 gi|15140947|emb|CAC49461.1| hypothetical conserved protein [Sinorhizobium meliloti 1021]
          Length = 245

 Score = 39.7 bits (91), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G   VF R  GC+            +C +CD+    +       
Sbjct: 11  VSEIFGPTIQGEGVLIGLPTVFVRSGGCDY-----------RCSWCDS-LHAVDSNYRHE 58

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +      ++ +E       E     L+GG P +Q    LI   ++ G+  A+ET G++  
Sbjct: 59  WQTMSTEEVWQEIVRLSGGEAVMVSLSGGNPAIQPLGDLIGRGHENGYRFALETQGSVAR 118

Query: 125 P--QGIDWICVSPK 136
                +D + +SPK
Sbjct: 119 DWFANLDVLVLSPK 132


>gi|159905256|ref|YP_001548918.1| radical SAM domain-containing protein [Methanococcus maripaludis
           C6]
 gi|159886749|gb|ABX01686.1| Radical SAM domain protein [Methanococcus maripaludis C6]
          Length = 242

 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 32/147 (21%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I+E+F ++ GEG   G+  +F RF  C L            C +CD          GG  
Sbjct: 2   IREVFSSIMGEGKFIGKRFIFVRFKECPL-----------DCIYCDE-----PNAPGGTA 45

Query: 66  NVDQLA-------------DLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKR 110
            V++++             +LIE        +      TGGEPLL  +      + L ++
Sbjct: 46  RVEEISGSGEFTEYLELDHELIETIEKLRTPDLFAVSFTGGEPLLYSNKIKKYSEILKQK 105

Query: 111 GFEIAVETNGTI-EPPQGIDWICVSPK 136
           G++  +E+NG   E   G D+  +  K
Sbjct: 106 GYKTFLESNGMFPEKLDGYDYASIDIK 132


>gi|330684947|gb|EGG96626.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus epidermidis VCU121]
          Length = 237

 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 16/140 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + E+F  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEVFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118
           +      +    ++  +    G     +  ++GG P L   +  L+    +   + A+ET
Sbjct: 49  SAKEDIQLMSAEEIYNKLREVGGDNFNHVTISGGNPALIKGIQDLVDLFEEHHIQTALET 108

Query: 119 NGTIEPP--QGIDWICVSPK 136
            G+   P    ID + +SPK
Sbjct: 109 QGSKFQPWMTQIDDLTISPK 128


>gi|329766234|ref|ZP_08257792.1| radical SAM domain-containing protein [Candidatus Nitrosoarchaeum
          limnia SFB1]
 gi|329137293|gb|EGG41571.1| radical SAM domain-containing protein [Candidatus Nitrosoarchaeum
          limnia SFB1]
          Length = 237

 Score = 39.3 bits (90), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 17/92 (18%)

Query: 8  EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
          EIF +++GEG   G   +F R +GC              C +CDT    +    G  Y++
Sbjct: 7  EIFTSVEGEGILYGTKTLFVRLAGCPF-----------TCFYCDTK-ESLPLDSGQEYSI 54

Query: 68 DQLADLIEEQWITGEKEGRYCV-LTGGEPLLQ 98
          ++   LI+       K   Y V  TGG+PL+Q
Sbjct: 55 EEACTLIDSNL----KNQTYKVNFTGGDPLIQ 82


>gi|56963892|ref|YP_175623.1| organic radical activating enzyme [Bacillus clausii KSM-K16]
 gi|56910135|dbj|BAD64662.1| organic radical activating enzyme [Bacillus clausii KSM-K16]
          Length = 217

 Score = 39.3 bits (90), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 17/119 (14%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           G+  +F R  GC+            +CR+CD+ F      K    + +++ + ++     
Sbjct: 3   GQKTMFVRTGGCDY-----------RCRWCDSAFTWDGSEKSEPLSAEEIIERLDS---L 48

Query: 81  GEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP--PQGIDWICVSPK 136
            E    +  ++GG P +   +  L+  LN++G   A+ET G+I       +D + VSPK
Sbjct: 49  CENGYSHVTISGGNPAIHKGIGELVALLNEKGVATAIETQGSIFQCWINRVDEVTVSPK 107


>gi|254476144|ref|ZP_05089530.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Ruegeria sp. R11]
 gi|214030387|gb|EEB71222.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Ruegeria sp. R11]
          Length = 235

 Score = 39.3 bits (90), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 54/134 (40%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CD+    +       
Sbjct: 5   IAEIFGPTIQGEGALIGEPTVFVRTGGCDY-----------RCSWCDS-LHAVDSKFRDT 52

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +      D+  E       +     L+GG P +Q    LI    + G+  A ET G+I  
Sbjct: 53  WMPMTTRDVWAEVTHLSGGQPLTVSLSGGNPAIQDFAELIAMGKEAGYRFACETQGSINQ 112

Query: 125 P--QGIDWICVSPK 136
                +D + +SPK
Sbjct: 113 AWFSKLDTLVLSPK 126


>gi|220929087|ref|YP_002505996.1| radical SAM protein [Clostridium cellulolyticum H10]
 gi|219999415|gb|ACL76016.1| Radical SAM domain protein [Clostridium cellulolyticum H10]
          Length = 438

 Score = 39.3 bits (90), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R +  C  C  D   I        N++Q+  ++ E         R  V+TGGEPL++ D+
Sbjct: 114 RCNLNCHHCYNDSHAINYEP----NLEQIHSVVNE---LSSTRLRNIVVTGGEPLMREDL 166

Query: 102 -PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
             +I  L    F + + TNGT+   Q I W+
Sbjct: 167 KTIIGWLRPLTFNLTLATNGTLINEQNIPWL 197


>gi|224437923|ref|ZP_03658865.1| radical SAM family protein [Helicobacter cinaedi CCUG 18818]
 gi|313144366|ref|ZP_07806559.1| pyruvate formate-lyase activating enzyme [Helicobacter cinaedi CCUG
           18818]
 gi|313129397|gb|EFR47014.1| pyruvate formate-lyase activating enzyme [Helicobacter cinaedi CCUG
           18818]
          Length = 363

 Score = 39.3 bits (90), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 13/101 (12%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
           +C FC  D++G +  K    +VD  A  I +    G K   +     GEP L  D+P + 
Sbjct: 51  RCTFCGVDYMGYKSIK---IDVDVYARAIADMGRLGVKSVMFA--GEGEPFLHKDLPQMV 105

Query: 106 ALNK-RGFEIAVETNGTIEPPQGI-------DWICVSPKAG 138
           AL+K  G ++ + TN  +   + +        WI VS  AG
Sbjct: 106 ALSKDSGVDVGITTNFVMANEKNLPTILKYASWIKVSLNAG 146


>gi|205356588|ref|ZP_03223351.1| hypothetical protein Cj8421_0161 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205345593|gb|EDZ32233.1| hypothetical protein Cj8421_0161 [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 224

 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 28  RFSGCNLWSGREQDRLSAQCRF---CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           RF+GCN        ++S   +    CDT            Y      +L++      +  
Sbjct: 2   RFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKLKQDF 61

Query: 85  GRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNGTIE 123
               V+TGGEPL+  + P     IQ L K  FEI  E+NG+IE
Sbjct: 62  DPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFESNGSIE 104


>gi|239636677|ref|ZP_04677679.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           warneri L37603]
 gi|239598032|gb|EEQ80527.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           warneri L37603]
          Length = 237

 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 16/140 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + E+F  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEVFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118
           +      +    ++  +    G     +  ++GG P L   +  L+    +   + A+ET
Sbjct: 49  SAKEDIQLMSAEEIYNKLREIGGDNFNHVTISGGNPALIKGIQDLVDLFEEHHIQTALET 108

Query: 119 NGTIEPP--QGIDWICVSPK 136
            G+   P    ID + +SPK
Sbjct: 109 QGSKFQPWMTQIDDLTISPK 128


>gi|219855994|ref|YP_002473116.1| hypothetical protein CKR_2651 [Clostridium kluyveri NBRC 12016]
 gi|219569718|dbj|BAH07702.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 311

 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 21  GRVAVFCRFS-GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQ 77
           GR    C +  G NL    E+++  + C  C T+       K     YN +Q+  +IE+Q
Sbjct: 71  GRCVQVCPYGVGINLNQRLEREKCKS-CGLC-TEVCTTNSRKNLIYHYNSEQILKIIEKQ 128

Query: 78  WITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE 123
            I     G     +GGE  LQ D+   L+  L  +  ++A+ET+G  +
Sbjct: 129 RIFYRYSGGGVTFSGGEATLQTDILRELVNKLYDKAIDLAIETSGHFQ 176


>gi|210135123|ref|YP_002301562.1| radical SAM domain-containing protein [Helicobacter pylori P12]
 gi|210133091|gb|ACJ08082.1| radical SAM domain-containing protein [Helicobacter pylori P12]
          Length = 251

 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 19/135 (14%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLW-------SGREQDRLSAQCRFCDTD 53
           MKL  + E F +LQGEG   G+ ++F R  GCNL        +    + L+     CD+ 
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILNDEILTG----CDSL 55

Query: 54  FVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPL----IQAL 107
           +      K      +    LIE  E      K   + +LTGGEP L  + P+    ++  
Sbjct: 56  YAVHPKFKETWDYYNDPKPLIERLEDLAPNYKHFDF-ILTGGEPSLYFNNPILISVLEHF 114

Query: 108 NKRGFEIAVETNGTI 122
            ++   + VE+NG+I
Sbjct: 115 YRQKIPLFVESNGSI 129


>gi|34419518|ref|NP_899531.1| conserved hypothetical protein [Vibrio phage KVP40]
 gi|34333199|gb|AAQ64354.1| conserved hypothetical protein [Vibrio phage KVP40]
          Length = 293

 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 36/151 (23%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNL---------------WSGREQDR---------- 42
           E+F ++QGEG + G+ ++F RF GCNL               W    +D           
Sbjct: 7   EMFYSIQGEGKYTGQASLFFRFWGCNLECHGFGQEDPTNKDTWVLDFKDYDPKANNVTSV 66

Query: 43  --LSAQCRFCDTDFVGIQ--GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
             L    R CD+ +   +       +  V  + + + E+         + V+TGGEP++ 
Sbjct: 67  EDLPVWTRGCDSSYTWAKKYAHLASKSEVADVCEAMLEKLPNRVWGDIHWVITGGEPMMN 126

Query: 99  VDVPLIQALN------KRGFEIAVETNGTIE 123
               +I+ +N           + +ETNGT E
Sbjct: 127 -QAQIIEMMNYFIKIDNYPKHVTIETNGTRE 156


>gi|116696219|ref|YP_841795.1| heme d1 biosynthesis protein (NirJ) [Ralstonia eutropha H16]
 gi|113530718|emb|CAJ97065.1| heme d1 biosynthesis protein (NirJ) [Ralstonia eutropha H16]
          Length = 387

 Score = 38.9 bits (89), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 27/109 (24%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLI 74
           AG V ++     CNL            CR C     DTDF G   T      +DQL D  
Sbjct: 24  AGPVVIWNLIRRCNL-----------NCRHCYATSADTDFKGELDTAEALRVLDQLRDAR 72

Query: 75  EEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTI 122
               I          L+GGEPLL+ D+  I A  +  GF +++ +NGT+
Sbjct: 73  VPALI----------LSGGEPLLRPDLYEIAARARALGFHLSLSSNGTL 111


>gi|161527549|ref|YP_001581375.1| radical SAM domain-containing protein [Nitrosopumilus maritimus
          SCM1]
 gi|160338850|gb|ABX11937.1| Radical SAM domain protein [Nitrosopumilus maritimus SCM1]
          Length = 237

 Score = 38.9 bits (89), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 17/92 (18%)

Query: 8  EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
          EIF +++GEG   G   +F R +GC              C +CDT    +    G  Y++
Sbjct: 7  EIFTSVEGEGILYGTKTLFVRLAGCPF-----------TCFYCDTK-ESLPLDSGTEYSI 54

Query: 68 DQLADLIEEQWITGEKEGRYCV-LTGGEPLLQ 98
          +    LI+       K   Y V  TGG+PL+Q
Sbjct: 55 EDANQLIDSNL----KNQTYKVNFTGGDPLIQ 82


>gi|153955615|ref|YP_001396380.1| glycyl radical activating protein [Clostridium kluyveri DSM 555]
 gi|146348473|gb|EDK35009.1| Predicted glycyl radical enzyme activator [Clostridium kluyveri DSM
           555]
          Length = 301

 Score = 38.9 bits (89), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 7/105 (6%)

Query: 21  GRVAVFCRFS-GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQ 77
           GR    C +  G NL    E+++  + C  C T+       K     YN +Q+  +IE+Q
Sbjct: 61  GRCVQVCPYGVGINLNQRLEREKCKS-CGLC-TEVCTTNSRKNLIYHYNSEQILKIIEKQ 118

Query: 78  WITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
            I     G     +GGE  LQ D+   L+  L  +  ++A+ET+G
Sbjct: 119 RIFYRYSGGGVTFSGGEATLQTDILRELVNKLYDKAIDLAIETSG 163


>gi|71282516|ref|YP_270877.1| putative heme biosynthesis protein [Colwellia psychrerythraea 34H]
 gi|71148256|gb|AAZ28729.1| putative heme biosynthesis protein [Colwellia psychrerythraea 34H]
          Length = 410

 Score = 38.5 bits (88), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 19/158 (12%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSG-CNLWSGREQDRLSAQCRFC-----DTDFVG 56
           ++ I ++  TL  +      V    +  G   +W+     R + QC+ C     D DF  
Sbjct: 1   MFRISQLLKTLHDDMAELKPVKASRKMKGPVVIWNLIR--RCNLQCKHCYSTSLDIDFKD 58

Query: 57  IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIA 115
              T+  +  +D L                  +L+GGEPLL+ D+  + +   ++GF +A
Sbjct: 59  ELSTEQVKTTIDDLK----------VAHVPVLILSGGEPLLRPDIYEITEYAKQKGFYLA 108

Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
           + TNGT+     I+ I  +      + I G +E    F
Sbjct: 109 LSTNGTLINEDNIEAIKAAEYQYVGISIDGLEEFHDEF 146


>gi|222055504|ref|YP_002537866.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221564793|gb|ACM20765.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 291

 Score = 38.5 bits (88), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 13/95 (13%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI-QALNKRGFEIAVETN 119
           +G   ++ ++  ++++ +I G    R  VLTGGEP ++ DV  I Q   K GF + + TN
Sbjct: 31  EGSEASLAEIKHVLDKLYIAG---LRRVVLTGGEPTVREDVADIAQYAKKIGFAVYLSTN 87

Query: 120 GTI------EPPQGIDWICVS---PKAGCDLKIKG 145
           G +      E    + WI +S   P A  D  I G
Sbjct: 88  GLLLKQIWKEISPYLSWISISLDAPSAELDKIITG 122


>gi|283488054|gb|ADB24720.1| NirJ [Methylomonas sp. 16a]
          Length = 379

 Score = 38.5 bits (88), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
           +L+GGEPLL  D+ P+ Q  +  GF +A+ +NGT+     I+ I         + + G +
Sbjct: 77  ILSGGEPLLHPDIFPISQRASDMGFYVALSSNGTLIDKNNIEQIAAIDYQYIGVSLDGMR 136

Query: 148 ELKLVFPQ 155
           E    F Q
Sbjct: 137 EAHDKFRQ 144


>gi|297624979|ref|YP_003706413.1| molybdenum cofactor biosynthesis protein A [Truepera radiovictrix
           DSM 17093]
 gi|297166159|gb|ADI15870.1| molybdenum cofactor biosynthesis protein A [Truepera radiovictrix
           DSM 17093]
          Length = 336

 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 6/79 (7%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
           +C +CD   +G      G  +V  +A ++E     G +  R+   TGGEPLL+ ++P + 
Sbjct: 37  RCTYCDPLGLG-HADPVGTLSVQDVAHVLEAAVGLGMRSVRF---TGGEPLLRRELPEMI 92

Query: 106 ALNKR-GFE-IAVETNGTI 122
           A  KR G E +A+ TN T+
Sbjct: 93  ACAKRLGVEDVAITTNATL 111


>gi|317014342|gb|ADU81778.1| hypothetical protein HPGAM_04815 [Helicobacter pylori Gambia94/24]
          Length = 251

 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 17/134 (12%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MKL  + E F +LQGEG   G+ ++F R  GCNL         + +  F D    G    
Sbjct: 1   MKL-PVVESFFSLQGEGQRIGKPSLFLRLGGCNLSC----KGFNCKTLFNDEILTGCDSL 55

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYC--------VLTGGEPLLQVDVPLIQALNKRGF 112
                      D   E     E+             +LTGGEP L  + P++ ++ +  +
Sbjct: 56  YAVHPKFQTSWDYYSEPKPLIERLVNLAPNYKDFDLILTGGEPSLYFNNPILLSVLEHFY 115

Query: 113 E----IAVETNGTI 122
                + VE+NG+I
Sbjct: 116 HKKIPLFVESNGSI 129


>gi|332180934|gb|AEE16622.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Treponema brennaborense DSM 12168]
          Length = 252

 Score = 38.5 bits (88), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 33/147 (22%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQ-- 77
           GRVA      GCNL           +C +C +T+ V          +  Q+   +E++  
Sbjct: 20  GRVAAALFLGGCNL-----------RCPYCYNTELVTGNALPEDAVSASQVLAHLEKRKN 68

Query: 78  WITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPK 136
            +TG       V++GGEPLL  V   LI      G++I ++TNGT+  P+ +  +  SP 
Sbjct: 69  VLTG------FVISGGEPLLSPVTEYLITQARALGYKIKLDTNGTL--PERLSHLLQSPA 120

Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENY 163
              D           V   V  SPE Y
Sbjct: 121 LCPD----------FVALDVKTSPEKY 137


>gi|327311467|ref|YP_004338364.1| putative molybdenum cofactor biosynthesis protein A [Thermoproteus
           uzoniensis 768-20]
 gi|326947946|gb|AEA13052.1| putative molybdenum cofactor biosynthesis protein A [Thermoproteus
           uzoniensis 768-20]
          Length = 341

 Score = 38.5 bits (88), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104
            C FC   F G     G   N D    L++     G ++ +   LTGGEPLL+ D V ++
Sbjct: 51  SCIFCH--FEGQLRGVGRLLNADDYGFLVDVLSKVGVRDYK---LTGGEPLLRSDIVDIV 105

Query: 105 QALNKRGFEIAVETNG 120
           + +N+ G EI++ TNG
Sbjct: 106 RKMNRDGVEISMTTNG 121


>gi|17986377|ref|NP_539011.1| radical SAM domain protein ExsD [Brucella melitensis bv. 1 str.
           16M]
 gi|17981967|gb|AAL51275.1| exsd protein [Brucella melitensis bv. 1 str. 16M]
          Length = 243

 Score = 38.5 bits (88), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +  +CD +   ++      
Sbjct: 9   ISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RWAWCD-NLHAVESRFRHE 56

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++  
Sbjct: 57  WKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVAK 116

Query: 125 P--QGIDWICVSPK 136
                +D + +SPK
Sbjct: 117 DWFSRLDTLVLSPK 130


>gi|225569138|ref|ZP_03778163.1| hypothetical protein CLOHYLEM_05218 [Clostridium hylemonae DSM
           15053]
 gi|225161937|gb|EEG74556.1| hypothetical protein CLOHYLEM_05218 [Clostridium hylemonae DSM
           15053]
          Length = 230

 Score = 38.5 bits (88), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 16/104 (15%)

Query: 19  HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           + G+VA     +GCN            +C FC    + +   K      ++++  ++++ 
Sbjct: 14  YPGKVACTIFTAGCNF-----------RCPFCHNASLVVDTYKNEEITQEEVSAFLKKRM 62

Query: 79  ITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
             G  +G  CV TGGEPL+Q D+ P ++ + + G+ + ++TNG+
Sbjct: 63  --GVLDG-VCV-TGGEPLIQSDIEPFLRQIKEMGYAVKLDTNGS 102


>gi|187251593|ref|YP_001876075.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Elusimicrobium minutum Pei191]
 gi|186971753|gb|ACC98738.1| Anaerobic ribonucleoside-triphosphate reductase activating protein
           [Elusimicrobium minutum Pei191]
          Length = 205

 Score = 38.1 bits (87), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 18/114 (15%)

Query: 19  HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           + G V+      GCN+           +C +C    +         YN D++   +E++ 
Sbjct: 14  YPGLVSAVIFMQGCNM-----------RCPYCHNPELVYPNMLLEPYNEDEVFAFLEKR- 61

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI 131
             G  +G   V+TGGEP +  D+P  +  +   G+++ ++TNGT+  P  I+ I
Sbjct: 62  -KGALDG--VVVTGGEPAVHADLPEFLAKIKALGYKVKLDTNGTM--PDMIEKI 110


>gi|317484368|ref|ZP_07943287.1| glycyl-radical enzyme activating family protein [Bilophila
           wadsworthia 3_1_6]
 gi|316924376|gb|EFV45543.1| glycyl-radical enzyme activating family protein [Bilophila
           wadsworthia 3_1_6]
          Length = 312

 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           G    VDQ+   +E+  +   + G    L+GGEPL+  D+  PL++    R  + A+ET 
Sbjct: 113 GENKTVDQILKEVEKDALFYARSGGGMTLSGGEPLMHADIALPLLREARHRRIKTAIETC 172

Query: 120 GTI 122
           G I
Sbjct: 173 GCI 175


>gi|301057214|ref|ZP_07198343.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300448665|gb|EFK12301.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 341

 Score = 38.1 bits (87), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
           +LTGGEPLL+ D+  L +A  + G  + + TNGT+  PQ I  +  S      + I G 
Sbjct: 50  ILTGGEPLLREDIFDLAKAGTEMGLRMVMATNGTLMTPQRIAQMKASGIKRLSISIDGA 108


>gi|315637210|ref|ZP_07892430.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Arcobacter butzleri JV22]
 gi|315478482|gb|EFU69195.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Arcobacter butzleri JV22]
          Length = 225

 Score = 38.1 bits (87), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 6/78 (7%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
           + +C +C  D   +  ++ G+Y+ +++ D ++++           VL+GGE  +   VP 
Sbjct: 31  NMRCSYCYND--NLVFSRIGKYSHNEVLDFLKKRVTLLSA----VVLSGGEATIHNLVPF 84

Query: 104 IQALNKRGFEIAVETNGT 121
            + + K G++I ++TNGT
Sbjct: 85  CKEIKKLGYKIKLDTNGT 102


>gi|193216092|ref|YP_001997291.1| radical SAM domain-containing protein [Chloroherpeton thalassium
           ATCC 35110]
 gi|193089569|gb|ACF14844.1| Radical SAM domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 343

 Score = 38.1 bits (87), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 13/89 (14%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE--GRYCVLTGGEPLLQV 99
           R +A+C+FCD         K   Y    L D+  +Q +T  K    ++   TGGEPLL  
Sbjct: 12  RCNAECKFCDI------WKKPSIYA--SLPDI--QQNLTDLKRLGVQFVDFTGGEPLLHK 61

Query: 100 DVPLIQALNKR-GFEIAVETNGTIEPPQG 127
           D+P I +  K+ GF  ++ TN  + P Q 
Sbjct: 62  DLPEILSFAKQLGFFTSITTNTLLYPKQA 90


>gi|303327027|ref|ZP_07357469.1| putative pyruvate formate-lyase 1 activating enzyme [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863015|gb|EFL85947.1| putative pyruvate formate-lyase 1 activating enzyme [Desulfovibrio
           sp. 3_1_syn3]
          Length = 322

 Score = 38.1 bits (87), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
           G + NVD +   +E+      + G    L+GGEPLLQ D  + L++    R  + AVET 
Sbjct: 123 GKKRNVDDVLSSVEQDAAFYSRSGGGMTLSGGEPLLQADFALALLRQARVRRLKTAVETC 182

Query: 120 GTI 122
           G +
Sbjct: 183 GMV 185


>gi|157737484|ref|YP_001490167.1| radical SAM domain-containing protein [Arcobacter butzleri RM4018]
 gi|157699338|gb|ABV67498.1| radical SAM domain protein [Arcobacter butzleri RM4018]
          Length = 234

 Score = 38.1 bits (87), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 6/78 (7%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
           + +C +C  D   +  ++ G+Y+ +++ D ++++           VL+GGE  +   VP 
Sbjct: 40  NMRCSYCYND--NLVFSRIGKYSHNEVLDFLKKRVTLLSA----VVLSGGEATIHNLVPF 93

Query: 104 IQALNKRGFEIAVETNGT 121
            + + K G++I ++TNGT
Sbjct: 94  CKEIKKLGYKIKLDTNGT 111


>gi|282163323|ref|YP_003355708.1| probable molybdenum cofactor biosynthesis protein A [Methanocella
           paludicola SANAE]
 gi|282155637|dbj|BAI60725.1| probable molybdenum cofactor biosynthesis protein A [Methanocella
           paludicola SANAE]
          Length = 312

 Score = 38.1 bits (87), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 13/101 (12%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           +R + QC +C  +  G  G+ GG   VD++A L+      G    ++   +GGEPLL+ D
Sbjct: 22  NRCNLQCIYCHNE--GESGS-GGEITVDEIARLVRIATKYGVDRVKF---SGGEPLLRTD 75

Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQ-------GIDWICVS 134
           +  I        +I++ TNGT+  P+       G+D + +S
Sbjct: 76  LEDILRALPPLKDISLTTNGTLLAPRAKGLKEAGLDRVNIS 116


>gi|150402999|ref|YP_001330293.1| radical SAM domain-containing protein [Methanococcus maripaludis
           C7]
 gi|150034029|gb|ABR66142.1| Radical SAM domain protein [Methanococcus maripaludis C7]
          Length = 242

 Score = 37.7 bits (86), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 33/139 (23%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I+E+F ++ GEG   G+  +F RF  C L            C +CD        T GG  
Sbjct: 2   IREVFSSIMGEGKFIGKRFIFVRFKECPL-----------DCIYCDE-----PNTPGGTA 45

Query: 66  NVDQLA-------------DLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKR 110
            V++++             +LIE        +      TGGEPLL  +      + L  +
Sbjct: 46  RVEEVSGSGDFTEYLELENELIEIIEKLRTPDLFAVSFTGGEPLLYPNKIKQYSEILKHK 105

Query: 111 GFEIAVETNGTIEPPQGID 129
           G++  +E+NG    P+ +D
Sbjct: 106 GYKTFLESNGMF--PERLD 122


>gi|13474824|ref|NP_106394.1| hypothetical protein mll5796 [Mesorhizobium loti MAFF303099]
 gi|14025580|dbj|BAB52180.1| mll5796 [Mesorhizobium loti MAFF303099]
          Length = 245

 Score = 37.7 bits (86), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 19/136 (13%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G   VF R  GC+            +C +CD+        +  R
Sbjct: 11  VSEIFGPTIQGEGVLIGLPTVFVRTGGCDY-----------RCSWCDSLHAV---DRRFR 56

Query: 65  YNVDQLADLIEEQWITGEKEGRYCV--LTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ + ++     Q +     G+  +  L+GG P +Q    LI   +  G+  A+ET G++
Sbjct: 57  HDWEMMSSDAVWQKVIALSSGQPVMVSLSGGNPAIQPLGQLIDRGHGEGYRFALETQGSV 116

Query: 123 EPP--QGIDWICVSPK 136
                  +D + +SPK
Sbjct: 117 SKQWFADLDVLVLSPK 132


>gi|315658944|ref|ZP_07911811.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           lugdunensis M23590]
 gi|315496068|gb|EFU84396.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           lugdunensis M23590]
          Length = 238

 Score = 37.7 bits (86), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 18/177 (10%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G+   +
Sbjct: 7   VLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAKDQ 54

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
             +    ++ E+    G     +  ++GG P L   +  L+          A+ET G+  
Sbjct: 55  IQLMSATEIYEKLIEIGGDCFDHVTISGGNPALIKGIQDLVDLFETEHIATALETQGSKF 114

Query: 124 PP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY--IGFDFERFSLQPM 176
            P    I+ + +SPK          + L  V  Q      N   + FD E ++   M
Sbjct: 115 QPWMTQINDLTISPKPPSSSMTPNLEVLDQVIAQCVPQSLNLKVVVFDDEDYAFAKM 171


>gi|219853188|ref|YP_002467620.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
 gi|219547447|gb|ACL17897.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
          Length = 399

 Score = 37.7 bits (86), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR +  C  C  +  G + T  G     +   +I++    G       + TGGEPL++ D
Sbjct: 49  DRCNLSCNHC-YNQSGPERTTEGELTTAEALKVIDDLADMGVP---LILFTGGEPLMRAD 104

Query: 101 V-PLIQALNKRGFEIAVETNGTIEPP 125
           +  L Q    RG ++A+ TNGT+  P
Sbjct: 105 IWDLAQHARNRGLKMALSTNGTLITP 130


>gi|237749263|ref|ZP_04579743.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
           OXCC13]
 gi|229380625|gb|EEO30716.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
           OXCC13]
          Length = 227

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 11/101 (10%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LI 104
           +CR+C    + ++  + G+Y+ +     +E +   G  +G   V +GGEPLLQ  +P  I
Sbjct: 38  RCRYCHNRHL-LESGEAGQYSWNDTFRWLETR--RGLLDG--VVFSGGEPLLQKQLPEAI 92

Query: 105 QALNKRGFEIAVETNGTIEPPQG-----IDWICVSPKAGCD 140
             +++ GFE+A+ T+G            I+W+ +  KA  D
Sbjct: 93  GQIHQNGFEVALHTSGVYPERLSKVLPLIEWVGLDIKAPFD 133


>gi|320527904|ref|ZP_08029071.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Solobacterium moorei F0204]
 gi|320131700|gb|EFW24263.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Solobacterium moorei F0204]
          Length = 383

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 20/106 (18%)

Query: 19  HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNV-DQLADLIEE 76
           + G+VA     +GCN+           +C FC+  D V I   +  RY   +++   + +
Sbjct: 162 YPGKVAATIYTAGCNM-----------KCPFCNQKDLVFI--PEKYRYIAPEEILSYLNQ 208

Query: 77  QWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
           +  +G  +G   V++GGEPLLQ + +P I+ + + G+ + ++TNGT
Sbjct: 209 R--SGLLDG--VVISGGEPLLQEELIPFIRQIKELGYAVKLDTNGT 250


>gi|15891589|ref|NP_357261.1| radical activating protein [Agrobacterium tumefaciens str. C58]
 gi|15160025|gb|AAK90046.1| radical activating protein [Agrobacterium tumefaciens str. C58]
          Length = 251

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 57/136 (41%), Gaps = 19/136 (13%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CDT    +       
Sbjct: 17  ISEIFGPTIQGEGPLIGLPTVFVRTGGCDY-----------RCSWCDT-LHAVDSEYRDT 64

Query: 65  YNVDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +    +  + +E  + G   G      L+GG P +Q    LI      G+  A+ET G+I
Sbjct: 65  WKPMSVEAIWQE--VLGLSGGMPLTVSLSGGNPAIQPLGTLIAKGQGEGYRFALETQGSI 122

Query: 123 EPP--QGIDWICVSPK 136
                  +D + +SPK
Sbjct: 123 AKDWFADLDHLVLSPK 138


>gi|242242077|ref|ZP_04796522.1| organic radical-activating protein [Staphylococcus epidermidis
           W23144]
 gi|242234462|gb|EES36774.1| organic radical-activating protein [Staphylococcus epidermidis
           W23144]
          Length = 237

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 16/140 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118
           +      +    ++ E     G     +  ++GG P L   +  L+    ++    A+ET
Sbjct: 49  SAKEDIKLMTAEEIYEALLEIGGHRFNHVTISGGNPALIKGIQELVNLFEEKHIYTALET 108

Query: 119 NGTIEPP--QGIDWICVSPK 136
            G+        ID + +SPK
Sbjct: 109 QGSRFQSWMTQIDDLTISPK 128


>gi|126465976|ref|YP_001041085.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Staphylothermus marinus F1]
 gi|126014799|gb|ABN70177.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Staphylothermus marinus F1]
          Length = 267

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 19/99 (19%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCV 89
           GCNL           +C FC    + I      RY ++++L + +E   I  +    Y  
Sbjct: 43  GCNL-----------KCPFCHNWMLAINHPSTCRYLDINKLIEELESARILID----YLH 87

Query: 90  LTGGEPLLQ---VDVPLIQALNKRGFEIAVETNGTIEPP 125
           +TGGEPL+Q   ++  L  A N  G  I++ TN T+  P
Sbjct: 88  VTGGEPLIQYRELEKILSLAKNNIGVNISINTNFTLYKP 126


>gi|217968079|ref|YP_002353585.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Dictyoglomus turgidum DSM 6724]
 gi|217337178|gb|ACK42971.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Dictyoglomus turgidum DSM 6724]
          Length = 228

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 21/138 (15%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LI 104
           +C FC    + I   K G+Y+     + I E+     K  +  V+TGGEP LQ D+P  +
Sbjct: 30  RCPFCHNPEL-ISQRKKGQYS----EEFILEEIDRRRKLIKGVVITGGEPTLQEDLPSFL 84

Query: 105 QALNKRGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG--------GQEL 149
             L KR   + ++TNG+       I   + +D++ +  K       K          + L
Sbjct: 85  FKLKKRRLLVKLDTNGSNPKMLVEIIKSKLLDYVAMDFKTSIPKYHKAIGLSERETSKYL 144

Query: 150 KLVFPQVNVSPENYIGFD 167
           K +F  + +  EN + F+
Sbjct: 145 KNIFESLRILKENNVRFE 162


>gi|319401217|gb|EFV89432.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           epidermidis FRI909]
          Length = 237

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 16/140 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118
           +      +    ++ E     G     +  ++GG P L   +  L+    ++    A+ET
Sbjct: 49  SAKEDIKLMTAEEIYEALLEIGGHRFNHVTISGGNPALIKGIQELVDLFEEKHIYTALET 108

Query: 119 NGTIEPP--QGIDWICVSPK 136
            G+        ID + +SPK
Sbjct: 109 QGSRFQSWMTQIDDLTISPK 128


>gi|116750480|ref|YP_847167.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699544|gb|ABK18732.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 377

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 9/55 (16%)

Query: 89  VLTGGEPLLQVDVPLIQAL-NKRGFEIAVETNGTIEPPQ--------GIDWICVS 134
           +LTGGEPLL+ D+  I A  N +GF + +  NGT+  P+        GI  I VS
Sbjct: 79  ILTGGEPLLRPDIFEIAAYGNAKGFRMTMAVNGTLLTPETAKRMIETGIQRISVS 133


>gi|326797578|ref|YP_004315397.1| molybdenum cofactor biosynthesis protein A [Sphingobacterium sp.
           21]
 gi|326548342|gb|ADZ76727.1| molybdenum cofactor biosynthesis protein A [Sphingobacterium sp.
           21]
          Length = 329

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 7/57 (12%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           + +DQLA +  +  +T  +      LTGGEPL++ D P +I+ L+K   E+ + TNG
Sbjct: 49  HEIDQLAKIFVDHGVTKIR------LTGGEPLVRKDAPAIIEILSKLPVELTMTTNG 99


>gi|281355888|ref|ZP_06242381.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Victivallis vadensis ATCC BAA-548]
 gi|281317257|gb|EFB01278.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Victivallis vadensis ATCC BAA-548]
          Length = 238

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 16/104 (15%)

Query: 19  HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           + G++       GCNL           +C FC    +        +    +    +E + 
Sbjct: 14  YPGKIGCIVFTGGCNL-----------RCPFCHNPCLVFDPASQPKVTEKEFFGFLERR- 61

Query: 79  ITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
             G  EG   V++GGEP+LQ D VP ++ + K GF   V++NGT
Sbjct: 62  -KGLLEG--VVISGGEPMLQPDLVPFVERIRKSGFLAKVDSNGT 102


>gi|20804218|emb|CAD31244.1| HYPOTHETICAL CONSERVED PROTEIN [Mesorhizobium loti R7A]
          Length = 245

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 19/136 (13%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G   VF R  GC+            +C +CD+        +  R
Sbjct: 11  VSEIFGPTIQGEGVLIGLPTVFVRTGGCDY-----------RCSWCDSLHAV---DRRFR 56

Query: 65  YNVDQLADLIEEQWITGEKEGRYCV--LTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ + ++     Q +     G+  +  L+GG P +Q    LI   +  G+  A+ET G++
Sbjct: 57  HDWEMMSPDAVWQKVIALSGGQPVMVSLSGGNPAIQPLSQLIDRGHGEGYRFALETQGSV 116

Query: 123 EPP--QGIDWICVSPK 136
                  +D + +SPK
Sbjct: 117 SKQWFADLDVLVLSPK 132


>gi|164688694|ref|ZP_02212722.1| hypothetical protein CLOBAR_02340 [Clostridium bartlettii DSM
           16795]
 gi|164602170|gb|EDQ95635.1| hypothetical protein CLOBAR_02340 [Clostridium bartlettii DSM
           16795]
          Length = 380

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 13/110 (11%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR-----YCVLTGGEPLLQ 98
           +  C+ C       +  K GR           E+WI+  +E +     + ++TGGEPLL 
Sbjct: 36  NMDCKMCYVKMTKSEVDKVGRLRT-------VEEWISIAEEAKDAGMLFLLITGGEPLLY 88

Query: 99  VDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
                L   L K G  I++ TN T+   +  D+    P +  ++ + GG 
Sbjct: 89  KGFKELYLKLVKMGLIISINTNATLIDEEMADFFAKYPPSRLNITLYGGS 138


>gi|118577062|ref|YP_876805.1| organic radical activating enzyme [Cenarchaeum symbiosum A]
 gi|118195583|gb|ABK78501.1| organic radical activating enzyme [Cenarchaeum symbiosum A]
          Length = 238

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 20/99 (20%)

Query: 1  MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
          ++LY   EIF +++GEG   G   +F R +GC              C +CDT+   +   
Sbjct: 4  VRLY---EIFTSIEGEGVLFGTKTLFVRLAGCPFG-----------CYYCDTE-EALPAD 48

Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQ 98
           G  + +++   +I++      +   Y V  TGGEPL+Q
Sbjct: 49 SGEEHTMEEACRMIDDAI----QPNTYKVNFTGGEPLVQ 83


>gi|22299396|ref|NP_682643.1| moaA/nifB/pqqE family protein [Thermosynechococcus elongatus BP-1]
 gi|22295579|dbj|BAC09405.1| moaA/nifB/pqqE family protein [Thermosynechococcus elongatus BP-1]
          Length = 335

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 40/93 (43%), Gaps = 26/93 (27%)

Query: 42  RLSAQCRFCD---------TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           R +A+C FCD          DF  IQ       N+  L  L       G K   Y   TG
Sbjct: 13  RCNARCHFCDIWALEPGKEADFSTIQT------NLRDLKRL-------GVK---YVDFTG 56

Query: 93  GEPLLQVDVPLIQALNKR-GFEIAVETNGTIEP 124
           GEPLL+ D P I    KR GF  ++ TN  + P
Sbjct: 57  GEPLLRADAPAIYREAKRLGFITSMTTNTILYP 89


>gi|307693876|ref|ZP_07636113.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Ruminococcaceae bacterium D16]
          Length = 230

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 31/146 (21%)

Query: 19  HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           + G+VA      GC+            +C FC    + +          + LA L + Q 
Sbjct: 14  YPGKVACTVFLGGCDF-----------RCPFCHNGELVLSPAPAEMNQEELLAFLKKRQ- 61

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKA 137
             G  +G    +TGGEPLL+ D+P L++A+   G+ + ++TNG+             P+A
Sbjct: 62  --GLLDG--VCITGGEPLLRPDLPQLLEAVKALGYPVKLDTNGS------------HPRA 105

Query: 138 GCDLKIKGGQELKLVFPQVNVSPENY 163
             DL  +  + +  V   V  SPE Y
Sbjct: 106 LVDLVER--KLVDYVAMDVKNSPERY 129


>gi|150389760|ref|YP_001319809.1| glycyl-radical activating family protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149949622|gb|ABR48150.1| glycyl-radical enzyme activating protein family [Alkaliphilus
           metalliredigens QYMF]
          Length = 301

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
           YN +Q+  +IE+Q I     G     +GGE  LQ D+   L+  L  +  ++A+ET+G
Sbjct: 106 YNTEQILKMIEKQEIFYRYSGGGVTFSGGEAALQADILRDLVCKLYDKAIDLAIETSG 163


>gi|319643534|ref|ZP_07998157.1| pyruvate formate-lyase 1 activating enzyme [Bacteroides sp.
           3_1_40A]
 gi|317384939|gb|EFV65895.1| pyruvate formate-lyase 1 activating enzyme [Bacteroides sp.
           3_1_40A]
          Length = 242

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 20/105 (19%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADL-IEEQWI 79
           R+ VF +  GCN            +C +C + D +  +G +     +D++  + + ++  
Sbjct: 19  RLVVFLQ--GCNF-----------RCLYCANPDTIDTKG-ESTETAIDEIVHMAVSQKAF 64

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
            G+K G     +GGEP LQ    +PL Q L ++   I ++TNG+I
Sbjct: 65  FGKKGG--VTFSGGEPTLQAKALIPLFQRLKEQNIHICIDTNGSI 107


>gi|1684728|emb|CAA98151.1| NirJ protein [Pseudomonas stutzeri]
          Length = 393

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 86  RYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134
           R  +L+GGEPLL+ D+  L      +GF +A+ TNGT+     I+ I  +
Sbjct: 78  RVLILSGGEPLLRADIFQLADYARDKGFFVALSTNGTLIDESNIERIAAA 127


>gi|237727146|ref|ZP_04557627.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D4]
 gi|229434002|gb|EEO44079.1| pyruvate formate-lyase activating enzyme [Bacteroides dorei
           5_1_36/D4]
          Length = 242

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 20/105 (19%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADL-IEEQWI 79
           R+ VF +  GCN            +C +C + D +  +G +     +D++  + + ++  
Sbjct: 19  RLVVFLQ--GCNF-----------RCLYCANPDTIDTKG-ESTETTIDEIVRMAVSQKAF 64

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
            G+K G     +GGEP LQ    +PL Q L ++   I ++TNG+I
Sbjct: 65  FGKKGG--VTFSGGEPTLQAKALIPLFQRLKEQSIHICIDTNGSI 107


>gi|212694897|ref|ZP_03303025.1| hypothetical protein BACDOR_04431 [Bacteroides dorei DSM 17855]
 gi|212662575|gb|EEB23149.1| hypothetical protein BACDOR_04431 [Bacteroides dorei DSM 17855]
          Length = 233

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 20/105 (19%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADL-IEEQWI 79
           R+ VF +  GCN            +C +C + D +  +G +     +D++  + + ++  
Sbjct: 10  RLVVFLQ--GCNF-----------RCLYCANPDTIDTKG-ESTETTIDEIVRMAVSQKAF 55

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
            G+K G     +GGEP LQ    +PL Q L ++   I ++TNG+I
Sbjct: 56  FGKKGG--VTFSGGEPTLQAKALIPLFQRLKEQSIHICIDTNGSI 98


>gi|254883806|ref|ZP_05256516.1| pyruvate formate-lyase activating enzyme [Bacteroides sp.
           4_3_47FAA]
 gi|254836599|gb|EET16908.1| pyruvate formate-lyase activating enzyme [Bacteroides sp.
           4_3_47FAA]
          Length = 240

 Score = 37.4 bits (85), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 20/105 (19%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADL-IEEQWI 79
           R+ VF +  GCN            +C +C + D +  +G +     +D++  + + ++  
Sbjct: 19  RLVVFLQ--GCNF-----------RCLYCANPDTIDTKG-ESTETAIDEIVHMAVSQKAF 64

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
            G+K G     +GGEP LQ    +PL Q L ++   I ++TNG+I
Sbjct: 65  FGKKGG--VTFSGGEPTLQAKALIPLFQRLKEQNIHICIDTNGSI 107


>gi|289551435|ref|YP_003472339.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180966|gb|ADC88211.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus lugdunensis
           HKU09-01]
          Length = 238

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 18/177 (10%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G+   +
Sbjct: 7   VLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSVFTW-DGSAKDQ 54

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
             +    ++ E+    G     +  ++GG P L   +  L+          A+ET G+  
Sbjct: 55  IQLMSATEIYEKLIEIGGDCFDHVTISGGNPALIKGIQDLVDLFETEHIATALETQGSKF 114

Query: 124 PP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY--IGFDFERFSLQPM 176
            P    I+ + +SPK          + L  V  Q      N   + FD E ++   M
Sbjct: 115 QPWMTQINDLTISPKPPSSSMTPNLEVLDQVIAQCVPQSLNLKVVVFDDEDYAFAKM 171


>gi|265750428|ref|ZP_06086491.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp.
           3_1_33FAA]
 gi|263237324|gb|EEZ22774.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp.
           3_1_33FAA]
          Length = 242

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 20/105 (19%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADL-IEEQWI 79
           R+ VF +  GCN            +C +C + D +  +G +     +D++  + + ++  
Sbjct: 19  RLVVFLQ--GCNF-----------RCLYCANPDTIDTKG-ESTETTIDEIVRMAVSQKAF 64

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
            G+K G     +GGEP LQ    +PL Q L ++   I ++TNG+I
Sbjct: 65  FGKKGG--VTFSGGEPTLQAKALIPLFQRLKEQNIHICIDTNGSI 107


>gi|319901645|ref|YP_004161373.1| pyruvate formate-lyase activating enzyme [Bacteroides helcogenes P
           36-108]
 gi|319416676|gb|ADV43787.1| pyruvate formate-lyase activating enzyme [Bacteroides helcogenes P
           36-108]
          Length = 241

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 8/81 (9%)

Query: 46  QCRFC-DTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--V 101
           +C +C + D + I+G T      + Q+A  I ++   G+K G     +GGEP LQ +  +
Sbjct: 30  RCLYCANPDTIEIKGGTPTSSEEILQMA--ISQKAFFGKKGG--ITFSGGEPTLQAEALI 85

Query: 102 PLIQALNKRGFEIAVETNGTI 122
           PL++ L K G  I +++NG I
Sbjct: 86  PLLKDLKKNGIHICLDSNGGI 106


>gi|77920322|ref|YP_358137.1| pyruvate-formate lyase-activating enzyme [Pelobacter carbinolicus
           DSM 2380]
 gi|77546405|gb|ABA89967.1| pyruvate-formate lyase-activating enzyme [Pelobacter carbinolicus
           DSM 2380]
          Length = 231

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 20/105 (19%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ--W 78
           GR+A    F GCNL            C FC    +     +   Y ++ L + +E++  +
Sbjct: 16  GRIASLVFFGGCNL-----------SCPFCHNPDLVQAPDRLPDYPLEPLFEELEQRRSF 64

Query: 79  ITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           I G       V++GGEP L  D +P ++ + + G  + ++TNG +
Sbjct: 65  IDG------VVISGGEPTLYPDLIPFMRRIKQLGLMVKLDTNGLL 103


>gi|70727187|ref|YP_254103.1| hypothetical protein SH2188 [Staphylococcus haemolyticus JCSC1435]
 gi|68447913|dbj|BAE05497.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 238

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 16/135 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G+    
Sbjct: 7   VLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAKED 54

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
             +    ++  +    G     +  ++GG P L   +  L+    ++    A+ET G+  
Sbjct: 55  IKLMTAEEIYNQLKKIGGDRFDHVTISGGNPALIKGIQDLVDLFEEKQIYTALETQGSKF 114

Query: 124 PP--QGIDWICVSPK 136
            P  + I+ + +SPK
Sbjct: 115 QPWMRQINDLTISPK 129


>gi|118431072|ref|NP_147264.2| molybdenum cofactor biosynthesis protein MoaA [Aeropyrum pernix K1]
 gi|116062398|dbj|BAA79443.2| molybdenum cofactor biosynthesis protein MoaA [Aeropyrum pernix K1]
          Length = 367

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 74  IEEQWITGEKEGRYCV----LTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +E+  I GE   R  V    LTGGEPL++ DV  I A+  R  E+++ TNG + P
Sbjct: 62  VEDYDIIGEAASRLGVDSFKLTGGEPLIRGDVDKIVAVLARYGEVSMTTNGILLP 116


>gi|6685662|sp|Q9YEV3|MOAA_AERPE RecName: Full=Probable molybdenum cofactor biosynthesis protein A
          Length = 355

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 74  IEEQWITGEKEGRYCV----LTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +E+  I GE   R  V    LTGGEPL++ DV  I A+  R  E+++ TNG + P
Sbjct: 50  VEDYDIIGEAASRLGVDSFKLTGGEPLIRGDVDKIVAVLARYGEVSMTTNGILLP 104


>gi|302189159|ref|ZP_07265832.1| sucrose porin precursor [Pseudomonas syringae pv. syringae 642]
          Length = 497

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +++++F  L     H         F    LW+G+  DR +    + D+D V + GT GG 
Sbjct: 171 NVRQVFTELD----HIAAFKGNSVFENATLWAGKHFDRDNFDIHWLDSDVVFLAGTGGGI 226

Query: 65  YNVDQLADLIEEQWITGEKEGRYC 88
           Y+V    D      + G   G + 
Sbjct: 227 YDVQMTKDWRSNYSLIGRNYGDFS 250


>gi|302036912|ref|YP_003797234.1| molybdenum cofactor biosynthesis protein A [Candidatus Nitrospira
           defluvii]
 gi|300604976|emb|CBK41309.1| Molybdenum cofactor biosynthesis protein A [Candidatus Nitrospira
           defluvii]
          Length = 354

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 10/94 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           DR + +C++C  + D+  +      R  +    ++ E   I  E       LTGGEPLL+
Sbjct: 30  DRCNLRCKYCMPEDDYAWLP-----RDTILTFEEMAELTAIFTELGVDKVRLTGGEPLLR 84

Query: 99  VDVP-LIQAL--NKRGFEIAVETNGTIEPPQGID 129
            D+P  ++ L  N+R  EIA+ +NG +   Q  D
Sbjct: 85  RDLPRFVRQLSENRRITEIALTSNGVLMADQAAD 118


>gi|134046626|ref|YP_001098111.1| radical SAM domain-containing protein [Methanococcus maripaludis
           C5]
 gi|132664251|gb|ABO35897.1| Radical SAM domain protein [Methanococcus maripaludis C5]
          Length = 242

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 33/139 (23%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I+E+F ++ GEG   G+  +F RF  C L            C +CD          GG  
Sbjct: 2   IREVFSSIMGEGKFIGKRFIFVRFKECPL-----------DCIYCDE-----PNAPGGTA 45

Query: 66  NVDQLA---DLIEEQWITGE---------KEGRYCV-LTGGEPLLQVD--VPLIQALNKR 110
            V++++   D +E   +  E             + V  TGGEPLL  +      + L  +
Sbjct: 46  RVEEVSGSGDFMEYLELEHELIDIIEKLRTPDLFAVSFTGGEPLLYSNKIKQYSEILKHK 105

Query: 111 GFEIAVETNGTIEPPQGID 129
           G++  +E+NG    P+ +D
Sbjct: 106 GYKTFLESNGMF--PERLD 122


>gi|205373223|ref|ZP_03226027.1| radical SAM domain-containing protein [Bacillus coahuilensis m4-4]
          Length = 252

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 24/141 (17%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           + + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F     T  
Sbjct: 6   FPVLEIFGPTVQGEGMVIGQKTMFIRTAGCDY-----------SCSWCDSSF-----TWD 49

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYC----VLTGGEP-LLQVDVPLIQALNKRGFEIAVE 117
           G    D      +E W    + G  C     ++GG P LL+    L+   +  G + A+E
Sbjct: 50  GSAKEDIRLLSADEIWSELVQVGGECFNHVTISGGNPALLKHLNELLDVFHNHGIQSALE 109

Query: 118 TNGTI--EPPQGIDWICVSPK 136
           T G+   +    ID + +SPK
Sbjct: 110 TQGSRWQDWFLDIDDLTLSPK 130


>gi|145554191|gb|ABP68894.1| unknown [Bacillus sp. PL-12]
          Length = 258

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 24/139 (17%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F      K   
Sbjct: 22  VMEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCAWCDSSFTWDGSGKDLV 70

Query: 65  YNVDQLADLIEEQWITGEKEG----RYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
             +D      +E W   +  G     Y  ++GG P L  ++  L++ L +    I +ET 
Sbjct: 71  RQMDA-----DEVWRELKALGGDGFTYVTISGGNPALIKNLSGLVELLKENQISICLETQ 125

Query: 120 GTIEPPQ--GIDWICVSPK 136
           G+        ID + +SPK
Sbjct: 126 GSKWQDWFLEIDALTLSPK 144


>gi|294102548|ref|YP_003554406.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Aminobacterium colombiense DSM 12261]
 gi|293617528|gb|ADE57682.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Aminobacterium colombiense DSM 12261]
          Length = 229

 Score = 37.0 bits (84), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 15/77 (19%)

Query: 88  CVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
            V+TGGEP LQ D +P I+ +   GF + ++TNG+   P+G+         G DL     
Sbjct: 67  VVITGGEPTLQPDLLPFIEKVKNMGFLVKLDTNGS--DPKGLQSFI-----GKDL----- 114

Query: 147 QELKLVFPQVNVSPENY 163
             +  V   V  SPE Y
Sbjct: 115 --VDYVAMDVKASPEEY 129


>gi|304315862|ref|YP_003851007.1| radical SAM protein [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302777364|gb|ADL67923.1| Radical SAM domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 452

 Score = 37.0 bits (84), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--- 102
            C +C    +  +     R  VD   D I E+ + GEK   Y  L GGEP +  DV    
Sbjct: 104 SCIYCYERGIPTKKDLITREAVDAFFDDINER-LKGEKVKPYITLFGGEPFIDTDVQKEI 162

Query: 103 ---LIQALNKRGFEIAVETNG 120
              +++   + G+EIA  TNG
Sbjct: 163 IDYIVEKSKEYGYEIAAVTNG 183


>gi|304404568|ref|ZP_07386229.1| pyruvate formate-lyase activating enzyme [Paenibacillus
           curdlanolyticus YK9]
 gi|304346375|gb|EFM12208.1| pyruvate formate-lyase activating enzyme [Paenibacillus
           curdlanolyticus YK9]
          Length = 245

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--V 101
           + QC+FC         T G +  VD++ + IE      +  G    +TGGEP LQ     
Sbjct: 29  ALQCQFCHNPDTWDPAT-GRQVTVDEILNEIEPYLAYYKGSGGGITVTGGEPTLQAPFVA 87

Query: 102 PLIQALNKR-GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
            L +A  +R G   A++++G  +P   ++ +  +     DLK
Sbjct: 88  QLFKACKERFGLHTALDSSGFCDPSHAVELMTYTDLVLLDLK 129


>gi|300087565|ref|YP_003758087.1| radical SAM domain-containing protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527298|gb|ADJ25766.1| Radical SAM domain protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 381

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
           C  C      ++G   G  N ++   LI++    G+      +LTGGEPLL+ D+  I  
Sbjct: 30  CEHCRAS--ALKGPYPGELNSEECFRLIDQIHQIGQP---ILILTGGEPLLREDIFEIAG 84

Query: 107 L-NKRGFEIAVETNGTI 122
             +K+GF + + TNGT+
Sbjct: 85  YASKKGFRVVMGTNGTL 101


>gi|189347395|ref|YP_001943924.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
 gi|189341542|gb|ACD90945.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
          Length = 364

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 18/111 (16%)

Query: 19  HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEE 76
           H      F    GCNL           +CR C  D  + G +G +    +      +I E
Sbjct: 10  HPLHTIYFYLTEGCNL-----------KCRHCWIDPKYQG-EGEQHPSLDPSLFRKIIRE 57

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
               G    R   LTGGEPLL   +  L+  + + G +++VETNG +  PQ
Sbjct: 58  AIPLGLTSVR---LTGGEPLLHPAIGELLDCIGENGLQLSVETNGLLCSPQ 105


>gi|237710756|ref|ZP_04541237.1| pyruvate formate-lyase activating enzyme [Bacteroides sp.
           9_1_42FAA]
 gi|229455478|gb|EEO61199.1| pyruvate formate-lyase activating enzyme [Bacteroides sp.
           9_1_42FAA]
          Length = 168

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 20/105 (19%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADL-IEEQWI 79
           R+ VF    GCN            +C +C + D +  +G +     +D++  + + ++  
Sbjct: 19  RLVVF--LQGCNF-----------RCLYCANPDTIDTKG-ESTETTIDEIVRMAVSQKAF 64

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
            G+K G     +GGEP LQ    +PL Q L ++   I ++TNG+I
Sbjct: 65  FGKKGG--VTFSGGEPTLQAKALIPLFQRLKEQSIHICIDTNGSI 107


>gi|114567375|ref|YP_754529.1| molybdenum cofactor biosynthesis protein A [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|122317679|sp|Q0AVU6|MOAA_SYNWW RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|114338310|gb|ABI69158.1| GTP cyclohydrolase subunit MoaA [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 326

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +CR+C  +  G+       Y++  L ++     I  E   +   LTGGEPL++ +
Sbjct: 18  DRCNLRCRYCMPE-TGVDNLT--HYSILSLEEMARLVRIASELGIQKIRLTGGEPLVRRN 74

Query: 101 VP-LIQALNK--RGFEIAVETNGTI 122
           VP LI  + +  R  +IA+ TNGT+
Sbjct: 75  VPQLISYIAQIPRIDDIALTTNGTL 99


>gi|289648544|ref|ZP_06479887.1| sucrose porin precursor [Pseudomonas syringae pv. aesculi str.
           2250]
          Length = 497

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +++++F  L     H         F    LW+G+  DR +    + D+D V + GT GG 
Sbjct: 171 NVRQVFTELD----HIAAFKGNSVFENATLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 226

Query: 65  YNVDQLADLIEEQWITGEKEGRYC 88
           Y+V    D      + G   G + 
Sbjct: 227 YDVQMTKDWRSNYSLIGRNYGDFS 250


>gi|163858381|ref|YP_001632679.1| heme biosynthesis protein [Bordetella petrii DSM 12804]
 gi|163262109|emb|CAP44411.1| heme biosynthesis protein [Bordetella petrii]
          Length = 396

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 86  RYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144
           R  +L+GGEPLL+ D+  L      +GF +A+ +NGT+     I+ I  +      + I 
Sbjct: 79  RVLILSGGEPLLRPDLFQLAGHARVKGFFVALSSNGTLIDAHNIEQIAAAQFDYVGISID 138

Query: 145 GGQELKLVFPQV 156
           G QE+   + Q+
Sbjct: 139 GLQEVHDAWRQM 150


>gi|320321806|gb|EFW77904.1| sucrose porin precursor [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320331554|gb|EFW87494.1| sucrose porin precursor [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 497

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +++++F  L     H         F    LW+G+  DR +    + D+D V + GT GG 
Sbjct: 171 NVRQVFTELD----HIAAFKGNSVFENATLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 226

Query: 65  YNVDQLADLIEEQWITGEKEGRYC 88
           Y+V    D      + G   G + 
Sbjct: 227 YDVQMTKDWRSNYSLIGRNYGDFS 250


>gi|330954270|gb|EGH54530.1| sucrose porin [Pseudomonas syringae Cit 7]
          Length = 497

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +++++F  L     H         F    LW+G+  DR +    + D+D V + GT GG 
Sbjct: 171 NVRQVFTELD----HIAAFKGNSVFENATLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 226

Query: 65  YNVDQLADLIEEQWITGEKEGRYC 88
           Y+V    D      + G   G + 
Sbjct: 227 YDVQMTKDWRSNYSLIGRNYGDFS 250


>gi|150005399|ref|YP_001300143.1| putative pyruvate formate-lyase 1 activating enzyme [Bacteroides
           vulgatus ATCC 8482]
 gi|294777180|ref|ZP_06742637.1| putative pyruvate formate-lyase 1-activating enzyme [Bacteroides
           vulgatus PC510]
 gi|149933823|gb|ABR40521.1| putative pyruvate formate-lyase 1 activating enzyme [Bacteroides
           vulgatus ATCC 8482]
 gi|294449049|gb|EFG17592.1| putative pyruvate formate-lyase 1-activating enzyme [Bacteroides
           vulgatus PC510]
          Length = 242

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 20/105 (19%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADL-IEEQWI 79
           R+ VF +  GCN            +C +C + D +  +G +     +D++  + + ++  
Sbjct: 19  RLVVFLQ--GCNF-----------RCLYCANPDTIDTKG-ESTETAIDEIVRMAVSQKAF 64

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
            G+K G     +GGEP LQ    +PL Q L ++   I ++TNG+I
Sbjct: 65  FGKKGG--VTFSGGEPTLQAKALIPLFQRLKEQNIHICIDTNGSI 107


>gi|325297399|ref|YP_004257316.1| pyruvate formate-lyase activating enzyme [Bacteroides salanitronis
           DSM 18170]
 gi|324316952|gb|ADY34843.1| pyruvate formate-lyase activating enzyme [Bacteroides salanitronis
           DSM 18170]
          Length = 242

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 18/124 (14%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           R+ VF +  GCN            +C +C + D +  +G        D L   + ++   
Sbjct: 19  RLVVFLQ--GCNF-----------RCLYCANPDTIDCKGEGKNTAPEDILRMAVSQKPFF 65

Query: 81  GEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAG 138
           G+K G     +GGEP +Q    +PL + L + G  I V+TNG++      D   ++    
Sbjct: 66  GKKGG--ITFSGGEPTIQAKALIPLFRMLKEAGIHICVDTNGSVWNESVKDLFTLADLVL 123

Query: 139 CDLK 142
            D+K
Sbjct: 124 LDVK 127


>gi|330890540|gb|EGH23201.1| sucrose porin [Pseudomonas syringae pv. mori str. 301020]
          Length = 493

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +++++F  L     H         F    LW+G+  DR +    + D+D V + GT GG 
Sbjct: 167 NVRQVFTELD----HIAAFKGNSVFENATLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 222

Query: 65  YNVDQLADLIEEQWITGEKEGRYC 88
           Y+V    D      + G   G + 
Sbjct: 223 YDVQMTKDWRSNYSLIGRNYGDFS 246


>gi|145299902|ref|YP_001142743.1| sucrose porin [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142852674|gb|ABO90995.1| sucrose porin [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 496

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 21  GRVAVF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
           G +A F   F    LW+G+  DR +    + D+D V + GT GG Y+V QLAD
Sbjct: 183 GNLASFDGAFKNAVLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGVYDV-QLAD 234


>gi|118576201|ref|YP_875944.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A]
 gi|118194722|gb|ABK77640.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A]
          Length = 554

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 33/182 (18%)

Query: 4   YSIKEIFLTL--QGEGGHAGRVAV----------FC--RFSGCNLWSGREQDRLSAQCRF 49
           Y + + F T    G+G HA  V V           C    S   L +    +R    C +
Sbjct: 65  YELYQKFSTYWQDGKGAHAPNVMVDKCACPNNCGLCTNHLSHSGLANMIVTNRCDLTCWY 124

Query: 50  CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE----GRYCVLTGGEPLLQVDVP-LI 104
           C   F  ++    G Y  +   D +     T   E    G    +TGGEP+L+ D+  +I
Sbjct: 125 C---FFYVKKGLEGAYMYEPSLDQVRAMMKTLRSERPIAGNSIQITGGEPMLRTDITDII 181

Query: 105 QALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN--VSPE 161
           + + + G + I + TNG            + P+A  D+++ G   L L F  V    +P+
Sbjct: 182 KIMKEEGVDHIQMNTNGIRH--------AMDPEAARDVRLAGCNNLYLSFDGVTARTNPK 233

Query: 162 NY 163
           N+
Sbjct: 234 NH 235


>gi|330882022|gb|EGH16171.1| sucrose porin [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 550

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +++++F  L     H         F    LW+G+  DR +    + D+D V + GT GG 
Sbjct: 224 NVRQVFTELD----HIAAFKGNSVFENATLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 279

Query: 65  YNVDQLADLIEEQWITGEKEGRYC 88
           Y+V    D      + G   G + 
Sbjct: 280 YDVQMTKDWRSNYSLIGRNYGDFS 303


>gi|147920417|ref|YP_685808.1| hypothetical protein RCIX1164 [uncultured methanogenic archaeon
           RC-I]
 gi|110621204|emb|CAJ36482.1| hypothetical protein RCIX1164 [uncultured methanogenic archaeon
           RC-I]
          Length = 340

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 7/58 (12%)

Query: 72  DLIEEQW--ITG----EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           DL   +W  ITG    E   R   ++GGEPLL+ D+P ++  +  RG +I + TNGT+
Sbjct: 42  DLPAPEWAKITGKLQRESSVRLITVSGGEPLLREDLPEILGDIKTRGIDINLITNGTL 99


>gi|331092875|ref|ZP_04586273.2| sucrose porin [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331125372|ref|ZP_04592725.2| sucrose porin [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020662|gb|EGI00719.1| sucrose porin [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331027131|gb|EGI07186.1| sucrose porin [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 508

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +++++F  L     H         F    LW+G+  DR +    + D+D V + GT GG 
Sbjct: 199 NVRQVFTELD----HIAAFKGNSMFENSTLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 254

Query: 65  YNVDQLADLIEEQWITGEKEGRYC 88
           Y+V    D      + G   G + 
Sbjct: 255 YDVQMTKDWRSNYSLIGRNYGDFS 278


>gi|330810031|ref|YP_004354493.1| heme d1 biosynthesis protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378139|gb|AEA69489.1| heme d1 biosynthesis protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 392

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 86  RYCVLTGGEPLLQVDVPLIQALNK-RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144
           R  +L+GGEPLL+ D+  + A  + +GF +A+ TNGT+     I+ I  +      + I 
Sbjct: 77  RVLILSGGEPLLREDLFQLSAYARDKGFFLALSTNGTLIDASNIEQIAAANFDYVGISID 136

Query: 145 GGQELKLVFPQVNVS 159
           G +     F Q+  S
Sbjct: 137 GLEATHDEFRQLKGS 151


>gi|39997584|ref|NP_953535.1| TatD family deoxyribonuclease [Geobacter sulfurreducens PCA]
 gi|39984476|gb|AAR35862.1| deoxyribonuclease, TatD family [Geobacter sulfurreducens PCA]
          Length = 462

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 56/142 (39%), Gaps = 28/142 (19%)

Query: 15  GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT--DFVGIQGTKGGRYNVDQLAD 72
           GE   A R+A   R    N       +R S +C FC    D+      KG    +D   D
Sbjct: 261 GESDQAARIAYRIR----NSLYLNITNRCSNRCSFCAKFDDYT----VKGHHLRLDHEPD 312

Query: 73  LIEEQWITGE----KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQ 126
             E     GE     E  +C    GEP+L++D  V + + L KRGF I + T+G      
Sbjct: 313 SAEVLAAVGEPGPVDEIVFCGF--GEPMLRLDLIVEVARELKKRGFRIRINTDGQANLVH 370

Query: 127 G----------IDWICVSPKAG 138
           G          +D I VS  A 
Sbjct: 371 GRNVLPELQGLVDCISVSLNAA 392


>gi|307635039|gb|ADI85246.2| magnesium-dependent deoxyribonuclease, TatD family, and radical SAM
           domain iron-sulfur oxidoreductase [Geobacter
           sulfurreducens KN400]
          Length = 462

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 56/142 (39%), Gaps = 28/142 (19%)

Query: 15  GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT--DFVGIQGTKGGRYNVDQLAD 72
           GE   A R+A   R    N       +R S +C FC    D+      KG    +D   D
Sbjct: 261 GESDQAARIAYRIR----NSLYLNITNRCSNRCSFCAKFDDYT----VKGHHLRLDHEPD 312

Query: 73  LIEEQWITGE----KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQ 126
             E     GE     E  +C    GEP+L++D  V + + L KRGF I + T+G      
Sbjct: 313 SAEVLAAVGEPGPVDEIVFCGF--GEPMLRLDLIVEVARELKKRGFRIRINTDGQANLVH 370

Query: 127 G----------IDWICVSPKAG 138
           G          +D I VS  A 
Sbjct: 371 GRNVLPELQGLVDCISVSLNAA 392


>gi|71738079|ref|YP_277264.1| sucrose porin [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558632|gb|AAZ37843.1| sucrose porin precursor [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 525

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +++++F  L     H         F    LW+G+  DR +    + D+D V + GT GG 
Sbjct: 199 NVRQVFTELD----HIAAFKGNSVFENATLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 254

Query: 65  YNVDQLADLIEEQWITGEKEGRYC 88
           Y+V    D      + G   G + 
Sbjct: 255 YDVQMTKDWRSNYSLIGRNYGDFS 278


>gi|330977465|gb|EGH77411.1| sucrose porin [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 497

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +++++F  L     H         F    LW+G+  DR +    + D+D V + GT GG 
Sbjct: 171 NVRQVFTELD----HIAAFKGNSVFENSTLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 226

Query: 65  YNVDQLADLIEEQWITGEKEGRYC 88
           Y+V    D      + G   G + 
Sbjct: 227 YDVQMTKDWRSNYSLIGRNYGDFS 250


>gi|330943013|gb|EGH45458.1| sucrose porin [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 497

 Score = 36.6 bits (83), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +++++F  L     H         F    LW+G+  DR +    + D+D V + GT GG 
Sbjct: 171 NVRQVFTELD----HIAAFKGNSVFENSTLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 226

Query: 65  YNVDQLADLIEEQWITGEKEGRYC 88
           Y+V    D      + G   G + 
Sbjct: 227 YDVQMTKDWRSNYSLIGRNYGDFS 250


>gi|118576205|ref|YP_875948.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A]
 gi|118194726|gb|ABK77644.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A]
          Length = 589

 Score = 36.6 bits (83), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 33/182 (18%)

Query: 4   YSIKEIFLTL--QGEGGHAGRVAV----------FC--RFSGCNLWSGREQDRLSAQCRF 49
           Y + + F T    G+G HA  V V           C    S   L +    +R    C +
Sbjct: 100 YELYQKFSTYWQDGKGAHAPNVMVDKCACPNNCGLCTNHLSHSGLANMIVTNRCDLTCWY 159

Query: 50  CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE----GRYCVLTGGEPLLQVDVP-LI 104
           C   F  ++    G Y  +   D +     T   E    G    +TGGEP+L+ D+  +I
Sbjct: 160 C---FFYVKKGLEGAYMYEPSLDQVRAMMKTLRSERPIAGNSIQITGGEPMLRTDITDII 216

Query: 105 QALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN--VSPE 161
           + + + G + I + TNG            + P+A  D+++ G   L L F  V    +P+
Sbjct: 217 KIMKEEGVDHIQMNTNGIRH--------AMDPEAARDVRLAGCNNLYLSFDGVTARTNPK 268

Query: 162 NY 163
           N+
Sbjct: 269 NH 270


>gi|78778108|ref|YP_394423.1| hypothetical protein Suden_1914 [Sulfurimonas denitrificans DSM
           1251]
 gi|78498648|gb|ABB45188.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 221

 Score = 36.6 bits (83), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 4/38 (10%)

Query: 89  VLTGGEPLLQVDVPL----IQALNKRGFEIAVETNGTI 122
           VLTGGEPL+  + P+    ++ L +RG +I  ETNGT+
Sbjct: 61  VLTGGEPLIYANEPIFIEFLEKLYERGHKITFETNGTL 98


>gi|288803627|ref|ZP_06409057.1| cobalamin synthesis protein [Prevotella melaninogenica D18]
 gi|288333867|gb|EFC72312.1| cobalamin synthesis protein [Prevotella melaninogenica D18]
          Length = 418

 Score = 36.6 bits (83), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 10/123 (8%)

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN----KRGFE-IAVE 117
           G  N+D  ADLIE   +  +K+     L  G     + + L+Q LN    ++ F+ I +E
Sbjct: 43  GEVNID--ADLIEAGGVVDQKDDSLVALQNGCICCTLKMDLVQQLNEIVSQQKFDYIVIE 100

Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN---VSPENYIGFDFERFSLQ 174
            +G  EP      IC  P+   DL  KG   L  +   V+   +  E   G D  +  LQ
Sbjct: 101 ASGICEPAPIAQTICAYPQMYPDLAKKGKAVLDSIVTVVDARRMCDEFSAGNDLLKKDLQ 160

Query: 175 PMD 177
             D
Sbjct: 161 EDD 163


>gi|302345609|ref|YP_003813962.1| CobW/P47K family protein [Prevotella melaninogenica ATCC 25845]
 gi|302149306|gb|ADK95568.1| CobW/P47K family protein [Prevotella melaninogenica ATCC 25845]
          Length = 421

 Score = 36.6 bits (83), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 10/123 (8%)

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN----KRGFE-IAVE 117
           G  N+D  ADLIE   +  +K+     L  G     + + L+Q LN    ++ F+ I +E
Sbjct: 43  GEVNID--ADLIEAGGVVDQKDDSLVALQNGCICCTLKMDLVQQLNEIVSQQKFDYIVIE 100

Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN---VSPENYIGFDFERFSLQ 174
            +G  EP      IC  P+   DL  KG   L  +   V+   +  E   G D  +  LQ
Sbjct: 101 ASGICEPAPIAQTICAYPQMYPDLAKKGKAVLDSIVTVVDARRMCDEFSAGNDLLKKDLQ 160

Query: 175 PMD 177
             D
Sbjct: 161 EDD 163


>gi|330809190|ref|YP_004353652.1| sucrose porin [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327377298|gb|AEA68648.1| sucrose porin [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 518

 Score = 36.6 bits (83), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +++++F  L     H         F    LW+G+  DR +    + D+D V + GT GG 
Sbjct: 192 NVRQVFTELD----HLAAFKGNSMFENSTLWAGKRFDRDNFDIHWLDSDVVYLAGTGGGI 247

Query: 65  YNVDQLADLIEEQWITGEKEGRYC 88
           Y++    D      + G   G + 
Sbjct: 248 YDIQMTKDWRSNYSLIGRNYGDFS 271


>gi|304314308|ref|YP_003849455.1| MoaA related protein [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587767|gb|ADL58142.1| MoaA related protein [Methanothermobacter marburgensis str.
           Marburg]
          Length = 227

 Score = 36.6 bits (83), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 7/76 (9%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
           +CR+C   F   +  +   Y+ +++AD +    I+ E+     ++ GGEP LQ D+P   
Sbjct: 25  RCRYC---FFTPRNCR--EYDAERIADRV--LRISSEEGIDSVLIAGGEPTLQRDLPEFT 77

Query: 106 ALNKRGFEIAVETNGT 121
               R   + + TNGT
Sbjct: 78  EALSRDLHVTISTNGT 93


>gi|90414839|ref|ZP_01222806.1| putative sucrose porin [Photobacterium profundum 3TCK]
 gi|90324082|gb|EAS40669.1| putative sucrose porin [Photobacterium profundum 3TCK]
          Length = 457

 Score = 36.6 bits (83), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
            S    W+G+  DR +    F D+D V + GT  G Y+V QL+D
Sbjct: 163 LSNATFWAGKRFDRANYDIHFLDSDIVFLSGTGAGVYDV-QLSD 205


>gi|326532348|dbj|BAK05103.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 722

 Score = 36.2 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 18/168 (10%)

Query: 57  IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG---FE 113
           + G  G  ++      L   +W+ G++   + +L     L  V   LI+  N        
Sbjct: 431 MSGCSGVEFSYHSENSLPLPEWVVGDETRAFHLL-----LHVVATLLIRRRNGAAPGRLT 485

Query: 114 IAVET-NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
            +VE+ N   E  Q  DWI + P AGC +++K    ++   P+ + SP+  + F   +  
Sbjct: 486 FSVESCNVDEEERQSRDWIPMRPSAGCSVRVKFQAGMETKSPRRSASPDMGLSFGMCKKI 545

Query: 173 LQPMDGPFLEENTN------LAISYCFQNP---KWRLSVQTHKFIGIR 211
           +Q M+G      ++      + + +  Q P   +W  +    +  G+R
Sbjct: 546 VQVMNGSMRSSGSDGGSTVTVVLQFQVQQPGARRWTSTPPVPRLDGLR 593


>gi|154495914|ref|ZP_02034610.1| hypothetical protein BACCAP_00194 [Bacteroides capillosus ATCC
           29799]
 gi|150274797|gb|EDN01853.1| hypothetical protein BACCAP_00194 [Bacteroides capillosus ATCC
           29799]
          Length = 376

 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 12/113 (10%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR-----YCVLTGGEPL 96
           R +  C+ C       Q    GR       +L  +QW+   ++ +     + +LTGGEPL
Sbjct: 40  RCNFNCKMCYVHQTAEQIAASGR------KELTADQWLDIARQAKDAGMVFLLLTGGEPL 93

Query: 97  LQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
              + P L+  L + G  ++V +NG++   + ++ +   P    ++ + GG +
Sbjct: 94  TFPEFPRLLHELKQLGLLVSVNSNGSLIRGEMLEALKKDPPLRFNITLYGGSD 146


>gi|289675040|ref|ZP_06495930.1| sucrose porin precursor [Pseudomonas syringae pv. syringae FF5]
          Length = 395

 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +++++F  L     H         F    LW+G+  DR +    + D+D V + GT GG 
Sbjct: 69  NVRQVFTELD----HIAAFKGNSVFENSTLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 124

Query: 65  YNVDQLADLIEEQWITGEKEGRYC 88
           Y+V    D      + G   G + 
Sbjct: 125 YDVQMTKDWRSNYSLIGRNYGDFS 148


>gi|291277034|ref|YP_003516806.1| hypothetical protein HMU08200 [Helicobacter mustelae 12198]
 gi|290964228|emb|CBG40077.1| putative hypothetical protein [Helicobacter mustelae 12198]
          Length = 286

 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 1  MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL 34
          M++  I EIF +LQGEG   G  +VF R   CNL
Sbjct: 1  MQILKISEIFYSLQGEGSAIGMPSVFVRVGLCNL 34


>gi|309389587|gb|ADO77467.1| Radical SAM domain protein [Halanaerobium praevalens DSM 2228]
          Length = 391

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 18/94 (19%)

Query: 35  WSGREQDRLSAQCRFCDTDFVGIQ-----GTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           W+   Q  L+  C+ C ++   I+      TK     +DQLAD           +    +
Sbjct: 41  WNINSQCNLN--CKHCYSNSNQIKKKTTLNTKEALKLIDQLADF----------KVPVLL 88

Query: 90  LTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           L+GGEPLL+ D V LI+    R   + + TNGT+
Sbjct: 89  LSGGEPLLRKDLVKLIEKAKSRNLRVVISTNGTL 122


>gi|302390514|ref|YP_003826335.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermosediminibacter oceani DSM 16646]
 gi|302201142|gb|ADL08712.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermosediminibacter oceani DSM 16646]
          Length = 240

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 21/106 (19%)

Query: 19  HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE--E 76
           + G VA      GCN            +C +C    + + G+  G+       D +E  +
Sbjct: 24  YPGVVACTVFLPGCNF-----------RCPYCHNGPL-VTGSPKGKVPESVFFDYLERRK 71

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
           + I G        +TGGEP L  D+P  I  L KRG ++ ++TNG+
Sbjct: 72  KLIDG------VCITGGEPTLWSDLPEFILKLKKRGLKVKLDTNGS 111


>gi|73668539|ref|YP_304554.1| tRNA-modifying enzyme [Methanosarcina barkeri str. Fusaro]
 gi|72395701|gb|AAZ69974.1| Fe-S oxidoreductase [Methanosarcina barkeri str. Fusaro]
          Length = 345

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 72  DLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           + I+E+W+ G +     +   GEP     +P LI+   KRGF   + TNGT+
Sbjct: 142 NAIKERWLEGNEPNNVAISLSGEPTFYPYLPELIEEYKKRGFTTFLVTNGTV 193


>gi|327398449|ref|YP_004339318.1| Radical SAM domain-containing protein [Hippea maritima DSM 10411]
 gi|327181078|gb|AEA33259.1| Radical SAM domain protein [Hippea maritima DSM 10411]
          Length = 351

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           R + + + ++IEE     E+     VLTGGEPLL+ DV  +   ++ +G  + + TNGT+
Sbjct: 34  RLSFEDITNIIEE---ISEQFKPVVVLTGGEPLLREDVFDIADFIHSKGMRVGLATNGTL 90


>gi|268325532|emb|CBH39120.1| conserved hypothetical protein radical SAM superfamily [uncultured
           archaeon]
          Length = 342

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 11/66 (16%)

Query: 87  YCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
           Y  LTGGEPLL+ D   ++  LN+  F+I++ +NG          I ++ K  C  K  G
Sbjct: 56  YVELTGGEPLLRKDFDKILDLLNRLDFQISICSNG----------ILITEKMCCQFKEYG 105

Query: 146 GQELKL 151
            ++L+L
Sbjct: 106 VEKLQL 111


>gi|330971878|gb|EGH71944.1| porin, LamB type [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 497

 Score = 36.2 bits (82), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +++++F  L     H         F    LW+G+  DR +    + D+D V + GT GG 
Sbjct: 171 NVRQVFTELD----HIAAFKGNSVFENSTLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 226

Query: 65  YNVDQLADLIEEQWITGEKEGRYC 88
           Y+V    D      + G   G + 
Sbjct: 227 YDVQMTRDWRSNYSLIGRNYGDFS 250


>gi|302342465|ref|YP_003806994.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075]
 gi|301639078|gb|ADK84400.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075]
          Length = 414

 Score = 36.2 bits (82), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRY----NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           +A+C +C T +   QG   GRY    +V ++ D + EQ I    +  + +   GEPL+  
Sbjct: 14  NARCTWCVTGYRNRQGVAYGRYMTPQDVAKVIDYLREQRII-TPDAYFFLYNWGEPLINP 72

Query: 100 D-VPLIQALNKRGFEIAVETNGT 121
               +++ LN+R     + TN +
Sbjct: 73  HFAEIVEELNRREVTYIISTNAS 95


>gi|27467403|ref|NP_764040.1| coenzyme PQQ synthesis-like protein [Staphylococcus epidermidis
           ATCC 12228]
 gi|251810140|ref|ZP_04824613.1| queuosine biosynthesis protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282875714|ref|ZP_06284585.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus epidermidis SK135]
 gi|293368166|ref|ZP_06614796.1| ExsD protein [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27314946|gb|AAO04082.1|AE016745_181 coenzyme PQQ synthesis-like protein [Staphylococcus epidermidis
           ATCC 12228]
 gi|251806332|gb|EES58989.1| queuosine biosynthesis protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295741|gb|EFA88264.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus epidermidis SK135]
 gi|291317700|gb|EFE58116.1| ExsD protein [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329723242|gb|EGG59772.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus epidermidis VCU144]
 gi|329735618|gb|EGG71902.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus epidermidis VCU045]
 gi|329736802|gb|EGG73067.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus epidermidis VCU028]
          Length = 237

 Score = 36.2 bits (82), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 20/142 (14%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV--GI 57
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F   G 
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTWDGS 49

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAV 116
                     +++ D + E    G     +  ++GG P L   +  L+     +    A+
Sbjct: 50  AKEDIKLMTAEEIYDALLE---IGGHRFNHVTISGGNPALIKGIQELVDLFEDKHIYTAL 106

Query: 117 ETNGTIEPP--QGIDWICVSPK 136
           ET G+        ID + +SPK
Sbjct: 107 ETQGSRFQSWMTQIDDLTISPK 128


>gi|303326377|ref|ZP_07356820.1| nitrite reductase heme biosynthesis J protein [Desulfovibrio sp.
           3_1_syn3]
 gi|302864293|gb|EFL87224.1| nitrite reductase heme biosynthesis J protein [Desulfovibrio sp.
           3_1_syn3]
          Length = 393

 Score = 36.2 bits (82), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100
           R + +C  C    V + GT     N +Q   +I++    G       + +GGEPL++ D 
Sbjct: 49  RCNLKCVHCYAHAVEVDGTDD--INTEQAKAMIDDLAAFG---APVMLFSGGEPLVRKDL 103

Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQ 126
           V L      +G    V TNGT+  PQ
Sbjct: 104 VELASHATGKGMRAVVSTNGTLITPQ 129


>gi|288936715|ref|YP_003440774.1| porin LamB type [Klebsiella variicola At-22]
 gi|288891424|gb|ADC59742.1| porin LamB type [Klebsiella variicola At-22]
          Length = 505

 Score = 36.2 bits (82), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           F G  LW+G+  DR +    + D+D V + GT GG Y+V
Sbjct: 199 FKGATLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDV 237


>gi|330830461|ref|YP_004393413.1| Sucrose porin [Aeromonas veronii B565]
 gi|328805597|gb|AEB50796.1| Sucrose porin [Aeromonas veronii B565]
          Length = 500

 Score = 36.2 bits (82), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
           F    LW+G+  DR +    + D+D V + GT GG Y+V QLAD
Sbjct: 196 FKNAVLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGVYDV-QLAD 238


>gi|117618402|ref|YP_857485.1| sucrose porin [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559809|gb|ABK36757.1| sucrose porin [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 496

 Score = 36.2 bits (82), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
           F    LW+G+  DR +    + D+D V + GT GG Y+V QLAD
Sbjct: 192 FKNAVLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGVYDV-QLAD 234


>gi|330836098|ref|YP_004410739.1| glycyl-radical enzyme activating protein family [Spirochaeta
           coccoides DSM 17374]
 gi|329748001|gb|AEC01357.1| glycyl-radical enzyme activating protein family [Spirochaeta
           coccoides DSM 17374]
          Length = 252

 Score = 36.2 bits (82), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 18/126 (14%)

Query: 6   IKEIFLTLQGEGGHAG---RVAVFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQG 59
           ++ + L +Q    H G   R  +F  F GCNL   W    +  +S + R        ++ 
Sbjct: 1   MEAVLLNIQHFCLHDGPGIRSTIF--FKGCNLRCHWCANPES-ISMKVR------PELEE 51

Query: 60  TKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAV 116
           + GGR + ++++   + +  +  ++ G    L+GGEPLLQ D    L  AL+  G  +A+
Sbjct: 52  SLGGRIWKLEEVLHDVLKDKVFYDESGGGVTLSGGEPLLQADFACALCDALHAHGVAVAI 111

Query: 117 ETNGTI 122
           ET   +
Sbjct: 112 ETAACV 117


>gi|322667095|gb|EFY63267.1| hypothetical protein SEEM507_17615 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MD_MDA09249507]
          Length = 81

 Score = 36.2 bits (82), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 11/49 (22%)

Query: 4  YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT 52
          Y I E+F TLQGEG   G  A+F R  GC +            C +CDT
Sbjct: 3  YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDT 40


>gi|228900023|ref|ZP_04064259.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis IBL 4222]
 gi|228964405|ref|ZP_04125519.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228795262|gb|EEM42754.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228859637|gb|EEN04061.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis IBL 4222]
          Length = 220

 Score = 36.2 bits (82), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 15/120 (12%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+ +E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKNQIRQMTAEDIWDELVA 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G ++  +  ++GG P L  ++  L+  L + G   A+ET G+   +    ID + +SPK
Sbjct: 51  IGGEKFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110


>gi|206895496|ref|YP_002246380.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738113|gb|ACI17191.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 230

 Score = 36.2 bits (82), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 88  CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
            V+TGGEP LQ D+ P ++ + K GF I ++TNG+
Sbjct: 68  VVVTGGEPTLQEDLQPFLEKIRKMGFLIKLDTNGS 102


>gi|319652978|ref|ZP_08007083.1| radical SAM domain-containing protein [Bacillus sp. 2_A_57_CT2]
 gi|317395327|gb|EFV76060.1| radical SAM domain-containing protein [Bacillus sp. 2_A_57_CT2]
          Length = 243

 Score = 36.2 bits (82), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 18/125 (14%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F     
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSSFTWDGS 49

Query: 60  TKGG--RYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAV 116
            K    +   D++   ++E    G     +  ++GG P LL+    LI  L     +I +
Sbjct: 50  AKDSIRQMEPDEIWKELKE---LGGDGFSFVTISGGNPALLKNLSELISLLKAEKIKICL 106

Query: 117 ETNGT 121
           ET G+
Sbjct: 107 ETQGS 111


>gi|257485634|ref|ZP_05639675.1| sucrose porin precursor [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331011924|gb|EGH91980.1| sucrose porin [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 493

 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +++++F  L     H         F    LW+G+  DR +    + D+D V + GT GG 
Sbjct: 167 NVRQVFTELD----HIAAFKGNSVFENATLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 222

Query: 65  YNVDQLADLIEEQWITGEKEGRYC 88
           Y+V    D      + G   G + 
Sbjct: 223 YDVQMNKDWRSNYSLIGRNYGDFS 246


>gi|66044018|ref|YP_233859.1| porin, LamB type [Pseudomonas syringae pv. syringae B728a]
 gi|63254725|gb|AAY35821.1| Porin, LamB type [Pseudomonas syringae pv. syringae B728a]
          Length = 525

 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +++++F  L     H         F    LW+G+  DR +    + D+D V + GT GG 
Sbjct: 199 NVRQVFTELD----HIAAFKGNSVFENSTLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 254

Query: 65  YNVDQLADLIEEQWITGEKEGRYC 88
           Y+V    D      + G   G + 
Sbjct: 255 YDVQMTRDWRSNYSLIGRNYGDFS 278


>gi|189461245|ref|ZP_03010030.1| hypothetical protein BACCOP_01895 [Bacteroides coprocola DSM 17136]
 gi|189432062|gb|EDV01047.1| hypothetical protein BACCOP_01895 [Bacteroides coprocola DSM 17136]
          Length = 242

 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 18/104 (17%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           R+ VF +  GCN            +C +C + D +  +G        D L   + ++   
Sbjct: 19  RLVVFLQ--GCNF-----------RCLYCANPDTIDAKGESKETSPEDILKMAVSQKPFF 65

Query: 81  GEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
           G+K G     +GGEP  Q    +PL + L + G  I V+TNG I
Sbjct: 66  GKKGG--ITFSGGEPTFQAKALIPLFRMLKEEGIHICVDTNGGI 107


>gi|224023837|ref|ZP_03642203.1| hypothetical protein BACCOPRO_00554 [Bacteroides coprophilus DSM
           18228]
 gi|224017059|gb|EEF75071.1| hypothetical protein BACCOPRO_00554 [Bacteroides coprophilus DSM
           18228]
          Length = 242

 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 18/104 (17%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           R+ VF +  GCN            +C +C + D +  +G        + L   + ++   
Sbjct: 19  RLVVFLQ--GCNF-----------RCLYCANPDTIDAKGESKETSPEEILKMAVSQKPFF 65

Query: 81  GEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
           G+K G     +GGEP  Q    +PL ++L + G  I V+TNG+I
Sbjct: 66  GKKGG--ITFSGGEPTFQARELIPLFRSLKEAGIHICVDTNGSI 107


>gi|330986986|gb|EGH85089.1| sucrose porin [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 497

 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +++++F  L     H         F    LW+G+  DR +    + D+D V + GT GG 
Sbjct: 171 NVRQVFTELD----HIAAFKGNSVFENATLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 226

Query: 65  YNVDQLADLIEEQWITGEKEGRYC 88
           Y+V    D      + G   G + 
Sbjct: 227 YDVQMNKDWRSNYSLIGRNYGDFS 250


>gi|300919760|ref|ZP_07136240.1| LamB porin [Escherichia coli MS 115-1]
 gi|300413191|gb|EFJ96501.1| LamB porin [Escherichia coli MS 115-1]
          Length = 505

 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           F G  LW+G+  DR +    + D+D V + GT GG Y+V
Sbjct: 199 FKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDV 237


>gi|50593430|gb|AAT79461.1| putative 1-acyl-sn-glycerol-3-phosphate acyltransferase
           [Agrobacterium luteum]
          Length = 284

 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW-ITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
           CR  DT FV      G    ++QL D +EE W IT   EG     T G  LL    PL++
Sbjct: 138 CRLNDTVFVSRSNRMGIAQQINQLRDALEETWAITIFPEG---TTTDGSMLLPFKAPLLK 194

Query: 106 AL 107
            L
Sbjct: 195 VL 196


>gi|290510229|ref|ZP_06549599.1| sucrose porin [Klebsiella sp. 1_1_55]
 gi|289776945|gb|EFD84943.1| sucrose porin [Klebsiella sp. 1_1_55]
          Length = 505

 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           F G  LW+G+  DR +    + D+D V + GT GG Y+V
Sbjct: 199 FKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDV 237


>gi|206579016|ref|YP_002239876.1| sucrose porin ScrY [Klebsiella pneumoniae 342]
 gi|206568074|gb|ACI09850.1| sucrose porin ScrY [Klebsiella pneumoniae 342]
          Length = 505

 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           F G  LW+G+  DR +    + D+D V + GT GG Y+V
Sbjct: 199 FKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDV 237


>gi|239828671|ref|YP_002951295.1| pyruvate formate-lyase activating enzyme [Geobacillus sp. WCH70]
 gi|239808964|gb|ACS26029.1| pyruvate formate-lyase activating enzyme [Geobacillus sp. WCH70]
          Length = 249

 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 9/80 (11%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-- 100
           +C++C   DT  +G    KG    V+++ D ++         G    ++GGEPLLQ+D  
Sbjct: 31  RCQYCHNADTWEIG----KGKEMTVEEIIDDVKTYLPFINASGGGITVSGGEPLLQIDFL 86

Query: 101 VPLIQALNKRGFEIAVETNG 120
           + L +A  K G   A++++G
Sbjct: 87  IELFKACKKLGIHTAIDSSG 106


>gi|330012904|ref|ZP_08307521.1| sucrose porin [Klebsiella sp. MS 92-3]
 gi|328533659|gb|EGF60363.1| sucrose porin [Klebsiella sp. MS 92-3]
          Length = 397

 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           F G  LW+G+  DR +    + D+D V + GT GG Y+V
Sbjct: 91  FKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDV 129


>gi|152969086|ref|YP_001334195.1| sucrose porin [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|134330|sp|P27218|SCRY_KLEPN RecName: Full=Sucrose porin; Flags: Precursor
 gi|43932|emb|CAA40657.1| sucrose porin [Klebsiella pneumoniae]
 gi|150953935|gb|ABR75965.1| sucrose porin [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 505

 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           F G  LW+G+  DR +    + D+D V + GT GG Y+V
Sbjct: 199 FKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDV 237


>gi|262041428|ref|ZP_06014631.1| sucrose porin [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259041222|gb|EEW42290.1| sucrose porin [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 510

 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           F G  LW+G+  DR +    + D+D V + GT GG Y+V
Sbjct: 204 FKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDV 242


>gi|238893529|ref|YP_002918263.1| sucrose porin [Klebsiella pneumoniae NTUH-K2044]
 gi|238545845|dbj|BAH62196.1| sucrose porin [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 510

 Score = 35.8 bits (81), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           F G  LW+G+  DR +    + D+D V + GT GG Y+V
Sbjct: 204 FKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDV 242


>gi|304313308|ref|YP_003812906.1| Heme D1 biosynthesis protein [gamma proteobacterium HdN1]
 gi|301799041|emb|CBL47284.1| Heme D1 biosynthesis protein [gamma proteobacterium HdN1]
          Length = 390

 Score = 35.8 bits (81), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134
           +L+GGEPL++ D+  + +   K GF + + +NGT+   Q ID I  +
Sbjct: 77  ILSGGEPLMRPDIFEIAERAKKMGFYVGLSSNGTLITEQNIDQIVAA 123


>gi|325062819|gb|ADY66509.1| radical activating protein [Agrobacterium sp. H13-3]
          Length = 251

 Score = 35.8 bits (81), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 54/134 (40%), Gaps = 15/134 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  T+QGEG   G   VF R  GC+            +C +CDT    +       
Sbjct: 17  ISEIFGPTIQGEGLLIGLPTVFVRTGGCDY-----------RCSWCDT-LHAVDSEYRDT 64

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +    +  + +E             L+GG P +Q    LI      G+  A+ET G+I  
Sbjct: 65  WKPMSVEAIWQEVRRLSGGVPLTVSLSGGNPAIQPLGQLIAKGQGEGYRFALETQGSIAK 124

Query: 125 PQ--GIDWICVSPK 136
                +D + +SPK
Sbjct: 125 DWFGDLDHLVLSPK 138


>gi|282165058|ref|YP_003357443.1| hypothetical protein MCP_2388 [Methanocella paludicola SANAE]
 gi|282157372|dbj|BAI62460.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 398

 Score = 35.8 bits (81), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 11/66 (16%)

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPP 125
           +D+LAD+          +  Y ++TGGEP L+ D+  L++ ++ +   + V+TNGT+   
Sbjct: 97  IDRLADM----------KVFYLIITGGEPFLRPDILELLRHISTKNMMVKVDTNGTLIDD 146

Query: 126 QGIDWI 131
             +D +
Sbjct: 147 DAVDEL 152


>gi|78223860|ref|YP_385607.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78195115|gb|ABB32882.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 383

 Score = 35.8 bits (81), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 89  VLTGGEPLLQVDVPLIQAL-NKRGFEIAVETNGTIEPPQ 126
            L GGEPLL+ D   I  L  K G E++V TNGTI  P+
Sbjct: 58  ALMGGEPLLRKDFWQIAGLIRKLGMELSVITNGTIHDPE 96


>gi|297162459|gb|ADI12171.1| radical SAM domain-containing protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 472

 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 18/93 (19%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL           +C +C   +   +    G  + ++  DL+++     + + R  + 
Sbjct: 104 GCNL-----------RCPYC---YASSEKCLPGELSTEESLDLVDQ---AADMDVRQMIF 146

Query: 91  TGGEPLLQVDVPLIQALNK-RGFEIAVETNGTI 122
           TGGEP+L+ D+ L+ +  + RG  + + TNGT+
Sbjct: 147 TGGEPMLRKDLFLVASHARDRGLTVNMITNGTM 179


>gi|307546263|ref|YP_003898742.1| maltoporin [Halomonas elongata DSM 2581]
 gi|307218287|emb|CBV43557.1| K02024 maltoporin [Halomonas elongata DSM 2581]
          Length = 511

 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
           F   ++W+G+  DR +    + D+DF+ + GT GG Y++ Q AD
Sbjct: 204 FENASIWAGKRFDRDNFDIHWLDSDFIFLAGTGGGIYDM-QFAD 246


>gi|44829548|gb|AAS47896.1| sucrose-specific outer membrane porin [Escherichia coli]
          Length = 505

 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           F G  LW+G+  DR +    + D+D V + GT GG Y+V
Sbjct: 199 FKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDV 237


>gi|268326277|emb|CBH39865.1| conserved hypothetical protein, radical SAM superfamily [uncultured
           archaeon]
          Length = 395

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 11/61 (18%)

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
           GR  +DQ+A L          + R  V TGGEPLL+ D+  LI      GF + + TNGT
Sbjct: 109 GRALIDQIAAL----------DIRSFVFTGGEPLLREDLFDLIAYAKSIGFSVFIATNGT 158

Query: 122 I 122
           +
Sbjct: 159 L 159


>gi|282880593|ref|ZP_06289299.1| CobW/P47K family protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305488|gb|EFA97542.1| CobW/P47K family protein [Prevotella timonensis CRIS 5C-B1]
          Length = 401

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 13/138 (9%)

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK----RGFE-IAVE 117
           G  N+D  ADLIE+  + G+K+     L  G     + V LI+ LN       F+ I +E
Sbjct: 43  GEVNID--ADLIEQGGVVGQKDDSLVALQNGCICCTLKVDLIEQLNDIVRMNKFDYIVIE 100

Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN---VSPENYIGFDFERFSLQ 174
            +G  EP      IC  P+    L   G  +L  +   V+   +  E  +G D  +   Q
Sbjct: 101 ASGICEPAPIAQTICAYPELYPHLAKNGIAKLDAIVTVVDALRLRDEFNVGDDLLK---Q 157

Query: 175 PMDGPFLEENTNLAISYC 192
            +D   LE      I +C
Sbjct: 158 NIDDDDLERLVIEQIEFC 175


>gi|268325167|emb|CBH38755.1| conserved hypothetical protein, radical SAM superfamily [uncultured
           archaeon]
          Length = 395

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 11/61 (18%)

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
           GR  +DQ+A L          + R  V TGGEPLL+ D+  LI      GF + + TNGT
Sbjct: 109 GRALIDQIAAL----------DIRSFVFTGGEPLLREDLFDLIAYAKSIGFSVFIATNGT 158

Query: 122 I 122
           +
Sbjct: 159 L 159


>gi|163783468|ref|ZP_02178459.1| Radical SAM [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881232|gb|EDP74745.1| Radical SAM [Hydrogenivirga sp. 128-5-R1-1]
          Length = 362

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 7/83 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           +R +  C+ C +     Q TKG   ++D++  + ++  +  EK  R+ +L+GGEPLL+ D
Sbjct: 31  NRCNLYCKHCYSS--ANQETKG-ELSLDEIRKVADD--LVNEK-VRFAILSGGEPLLRED 84

Query: 101 VPLIQA-LNKRGFEIAVETNGTI 122
           +  + A L ++G +  + TNG +
Sbjct: 85  IYDVSAILREKGIKTYLSTNGLL 107


>gi|2981659|pdb|1A0T|P Chain P, Sucrose-Specific Porin, With Bound Sucrose Molecules
 gi|2981660|pdb|1A0T|Q Chain Q, Sucrose-Specific Porin, With Bound Sucrose Molecules
 gi|2981661|pdb|1A0T|R Chain R, Sucrose-Specific Porin, With Bound Sucrose Molecules
 gi|3319010|pdb|1A0S|P Chain P, Sucrose-Specific Porin
 gi|3319011|pdb|1A0S|Q Chain Q, Sucrose-Specific Porin
 gi|3319012|pdb|1A0S|R Chain R, Sucrose-Specific Porin
 gi|31615806|pdb|1OH2|P Chain P, Sucrose-Specific Porin, With Bound Sucrose Molecules
 gi|31615808|pdb|1OH2|R Chain R, Sucrose-Specific Porin, With Bound Sucrose Molecules
          Length = 413

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           F G  LW+G+  DR +    + D+D V + GT GG Y+V
Sbjct: 107 FKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDV 145


>gi|213617522|ref|ZP_03372348.1| radical SAM domain protein [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-2068]
          Length = 59

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 11/49 (22%)

Query: 4  YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT 52
          Y I E+F TLQGEG   G  A+F R  GC +            C +CDT
Sbjct: 3  YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDT 40


>gi|134332|sp|P22340|SCRY_SALTY RecName: Full=Sucrose porin; Flags: Precursor
 gi|48830|emb|CAA40656.1| sucrose porin [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|155143|gb|AAA98417.1| sucrose porin [Plasmid pUR400]
          Length = 505

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           F G  LW+G+  DR +    + D+D V + GT GG Y+V
Sbjct: 199 FKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDV 237


>gi|229043184|ref|ZP_04190907.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus AH676]
 gi|228726146|gb|EEL77380.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus AH676]
          Length = 220

 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 20/158 (12%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+ +E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P L  ++  L+  L + G   A+ET G+   +    ID I +SPK
Sbjct: 51  IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110

Query: 137 AGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169
                     Q L     KL    +++    +  +DFE
Sbjct: 111 PPSSTMKTDFQRLDAIIQKLAGKDISLKVVVFDDYDFE 148


>gi|298529802|ref|ZP_07017205.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511238|gb|EFI35141.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 360

 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG-- 145
           + TGGEPLL+ D+  LI   + +G    +  NGT+  P+    I  S    C + I G  
Sbjct: 69  IFTGGEPLLRPDIFELISYADSQGLRCVMAPNGTLITPENAKEIKSSGIQRCSISIDGPT 128

Query: 146 GQELKLV 152
            QE  L+
Sbjct: 129 AQEHDLL 135


>gi|228945040|ref|ZP_04107401.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228814709|gb|EEM60969.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 220

 Score = 35.4 bits (80), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 20/158 (12%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P+L  ++  L+  L + G   A+ET G+   +    ID I +SPK
Sbjct: 51  IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110

Query: 137 AGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169
                     Q+L     KL    +++    +  +DFE
Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFE 148


>gi|281355779|ref|ZP_06242273.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
 gi|281318659|gb|EFB02679.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
          Length = 325

 Score = 35.4 bits (80), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R +  CRFC     G+         V+    L  E     +       L GGEPLL    
Sbjct: 17  RCNLHCRFCGQS-KGMLAAGESELPVETWLRLAREVRALADTPEPEITLWGGEPLLYSGF 75

Query: 102 P-LIQALNKRGFEIAVETNGTI 122
           P L + L + GF +A  TNGT+
Sbjct: 76  PRLARRLKEEGFRVAAVTNGTL 97


>gi|228920154|ref|ZP_04083503.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228839610|gb|EEM84902.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 220

 Score = 35.4 bits (80), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 20/158 (12%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDIWSELVA 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P L  ++  L+  L + G   A+ET G+   +    ID + +SPK
Sbjct: 51  IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLEIDEVTISPK 110

Query: 137 AGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169
                     Q+L     KL    +++    +  +DFE
Sbjct: 111 PPSSTMKTDFQKLDAMIQKLAGKDISLKVVVFDDYDFE 148


>gi|114566232|ref|YP_753386.1| radical SAM domain-containing protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337167|gb|ABI68015.1| radical SAM domain protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 333

 Score = 35.4 bits (80), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 44  SAQCR-FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101
           + QC  FCD  +           + +Q   LIEE    G    R  + +GGEPL++ D+ 
Sbjct: 8   TNQCNMFCDHCYRDAGARLEDELSTEQAKKLIEEIKKAG---FRIMIFSGGEPLMRPDIF 64

Query: 102 PLIQALNKRGFEIAVETNGTIEPPQ 126
            L Q   ++G  + + TNG++  P+
Sbjct: 65  ELGQYATRQGLRVVMGTNGSLISPE 89


>gi|228907074|ref|ZP_04070938.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis IBL 200]
 gi|228852578|gb|EEM97368.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis IBL 200]
          Length = 220

 Score = 35.4 bits (80), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 15/120 (12%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+ +E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKNQIRQMTAEDIWDELVT 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQ--GIDWICVSPK 136
            G +   +  ++GG P L  ++  L+  L + G   A+ET G+        ID + +SPK
Sbjct: 51  IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQNWLLQIDEVTISPK 110


>gi|228914013|ref|ZP_04077635.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228926472|ref|ZP_04089544.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|229090395|ref|ZP_04221638.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus Rock3-42]
 gi|229183635|ref|ZP_04310858.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus BGSC 6E1]
 gi|228599878|gb|EEK57475.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus BGSC 6E1]
 gi|228692978|gb|EEL46696.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus Rock3-42]
 gi|228833296|gb|EEM78861.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228845618|gb|EEM90647.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 220

 Score = 35.4 bits (80), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 20/158 (12%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P+L  ++  L+  L + G   A+ET G+   +    ID I +SPK
Sbjct: 51  IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110

Query: 137 AGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169
                     Q+L     KL    +++    +  +DFE
Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFE 148


>gi|91203309|emb|CAJ72948.1| similar to heme d1 biosynthesis protein NirJ [Candidatus Kuenenia
           stuttgartiensis]
          Length = 629

 Score = 35.4 bits (80), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 17/89 (19%)

Query: 42  RLSAQCRFCDTDFVGIQ-------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           R + QC  C  D   +         TK G   +DQ+A+L               +LTGGE
Sbjct: 15  RCNLQCDHCYLDANALTKKSPYELDTKEGFKLIDQMAEL---------NPNLLLILTGGE 65

Query: 95  PLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           PLL+ D+  L    +K+G  + + TNG +
Sbjct: 66  PLLRNDIYDLSHYASKKGMMVVLGTNGNV 94


>gi|228932724|ref|ZP_04095596.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228826929|gb|EEM72691.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 220

 Score = 35.4 bits (80), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 20/158 (12%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P+L  ++  L+  L + G   A+ET G+   +    ID I +SPK
Sbjct: 51  IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110

Query: 137 AGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169
                     Q+L     KL    +++    +  +DFE
Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFE 148


>gi|325298763|ref|YP_004258680.1| Radical SAM domain-containing protein [Bacteroides salanitronis DSM
           18170]
 gi|324318316|gb|ADY36207.1| Radical SAM domain protein [Bacteroides salanitronis DSM 18170]
          Length = 359

 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 3/108 (2%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R +  CR C +D   I G +      +    +++      +    + +LTGGEPL++ D+
Sbjct: 39  RCNLHCRHCGSDCKKIAGYRD--MPKEDFLRVLDNVASHTDPHKVFIILTGGEPLVREDL 96

Query: 102 PLI-QALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
               +A+ ++GF   + TNG    P+ ++ +  +      + + G +E
Sbjct: 97  EACGRAIYEKGFPWGMVTNGLFLTPERLEGLIQAGMHTATVSLDGFKE 144


>gi|319790216|ref|YP_004151849.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
 gi|317114718|gb|ADU97208.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
          Length = 376

 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 16/87 (18%)

Query: 42  RLSAQCRFCDTDFV-----GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
           R + QC  C +        G   T+ G+  +D +A L +             VLTGGEPL
Sbjct: 19  RCNLQCIHCRSASTMESEQGDFSTEDGKKLLDDIAKLSKPT----------VVLTGGEPL 68

Query: 97  LQVDV-PLIQALNKRGFEIAVETNGTI 122
           L+ D+  L +   K GF + + TNGT+
Sbjct: 69  LREDIWELAEYGTKLGFRMCIATNGTL 95


>gi|307594547|ref|YP_003900864.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM
           14429]
 gi|307549748|gb|ADN49813.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 503

 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
            L+GGEP +  D  P++  +N+RGF  A+ TNGT
Sbjct: 186 ALSGGEPTVHRDFWPVLAEINRRGFYSAIATNGT 219


>gi|229195638|ref|ZP_04322404.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus m1293]
 gi|228587887|gb|EEK45939.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus m1293]
          Length = 220

 Score = 35.0 bits (79), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 20/158 (12%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P+L  ++  L+  L + G   A+ET G+   +    ID I +SPK
Sbjct: 51  IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLEIDEITISPK 110

Query: 137 AGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169
                     Q+L     KL    +++    +  +DFE
Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFE 148


>gi|229138128|ref|ZP_04266726.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus BDRD-ST26]
 gi|228645473|gb|EEL01707.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus BDRD-ST26]
          Length = 220

 Score = 35.0 bits (79), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 20/158 (12%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P+L  ++  L+  L + G   A+ET G+   +    ID I +SPK
Sbjct: 51  IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLEIDEITISPK 110

Query: 137 AGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFE 169
                     Q+L     KL    +++    +  +DFE
Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFE 148


>gi|228957714|ref|ZP_04119458.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|229126759|ref|ZP_04255771.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus BDRD-Cer4]
 gi|229144046|ref|ZP_04272462.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus BDRD-ST24]
 gi|229149643|ref|ZP_04277874.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus m1550]
 gi|296502023|ref|YP_003663723.1| organic radical activating protein [Bacillus thuringiensis BMB171]
 gi|228633853|gb|EEK90451.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus m1550]
 gi|228639443|gb|EEK95857.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus BDRD-ST24]
 gi|228656699|gb|EEL12525.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus BDRD-Cer4]
 gi|228801957|gb|EEM48830.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|296323075|gb|ADH06003.1| organic radical activating protein [Bacillus thuringiensis BMB171]
          Length = 220

 Score = 35.0 bits (79), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 15/120 (12%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+ +E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P L  ++  L+  L + G   A+ET G+   +    ID I +SPK
Sbjct: 51  IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110


>gi|221636246|ref|YP_002524122.1| radical SAM domain protein [Thermomicrobium roseum DSM 5159]
 gi|221157912|gb|ACM07030.1| radical SAM domain protein [Thermomicrobium roseum DSM 5159]
          Length = 365

 Score = 35.0 bits (79), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 87  YCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
           Y  + GGEPLL+ D V L++    RG  +   TNG++      DWI  +P     + + G
Sbjct: 62  YINVGGGEPLLRPDFVELMEYAIARGIGVKFSTNGSLIDEAVADWIARTPYLDVQISLDG 121


>gi|229100293|ref|ZP_04231179.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus Rock3-29]
 gi|229114880|ref|ZP_04244293.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus Rock1-3]
 gi|228668572|gb|EEL24001.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus Rock1-3]
 gi|228683123|gb|EEL37115.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus Rock3-29]
          Length = 220

 Score = 35.0 bits (79), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 15/120 (12%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCSWCDSAFTW-DGSAKDQIRQMPAEDIWNELVE 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P+L  ++  L+  L + G   A+ET G+   +    ID I +SPK
Sbjct: 51  IGGENFSHVTISGGNPVLLKNIESLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110


>gi|213422146|ref|ZP_03355212.1| hypothetical protein Salmonentericaenterica_32183 [Salmonella
          enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 43

 Score = 35.0 bits (79), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 11/49 (22%)

Query: 4  YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT 52
          Y I E+F TLQGEG   G  A+F R  GC              C +CDT
Sbjct: 3  YPINEMFQTLQGEGYFTGVPAIFIRLQGC-----------PVGCAWCDT 40


>gi|229016691|ref|ZP_04173624.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus AH1273]
 gi|229022903|ref|ZP_04179423.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus AH1272]
 gi|228738438|gb|EEL88914.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus AH1272]
 gi|228744599|gb|EEL94668.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus AH1273]
          Length = 220

 Score = 35.0 bits (79), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 15/120 (12%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMSAEDIWNELVE 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P+L  ++  L+  L + G   A+ET G+   +    ID + +SPK
Sbjct: 51  IGGENFSHVTISGGNPVLLKNIESLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110


>gi|227327963|ref|ZP_03831987.1| putative pyruvate formate-lyase activating enzyme [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 316

 Score = 35.0 bits (79), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 3/110 (2%)

Query: 47  CRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPL 103
           CR C+T    G     G    V +L ++I + +      G    L+GGE  LQ D  V L
Sbjct: 98  CRKCETVCLSGALDVIGQEMTVTELMEIIMQDYPFYVSSGGGVTLSGGEMSLQTDFAVEL 157

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
           + A  +     AVET GT           V+     D+K    Q+ K +F
Sbjct: 158 LTACKRMMINTAVETQGTTLKSHYSKLAAVTDLFLFDIKHIDTQQHKALF 207


>gi|116754318|ref|YP_843436.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanosaeta thermophila PT]
 gi|116665769|gb|ABK14796.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanosaeta thermophila PT]
          Length = 247

 Score = 35.0 bits (79), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 77  QWITGEKEGRYC----VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           Q I  E  G  C    VL+GGEPL Q D  V + + ++ RG ++ +ETNG
Sbjct: 65  QSILHEFSGSVCIDSVVLSGGEPLAQSDAVVAIAREVDVRGLDLGIETNG 114


>gi|21227448|ref|NP_633370.1| tRNA-modifying enzyme [Methanosarcina mazei Go1]
 gi|20905817|gb|AAM31042.1| Fe-S oxidoreductase [Methanosarcina mazei Go1]
          Length = 365

 Score = 35.0 bits (79), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 72  DLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           + + E+W+ G +     +   GEP     +P LI+   KRGF   + TNGT+
Sbjct: 166 NALRERWLEGNQPNNVAISLSGEPTFYPYLPELIEEYEKRGFTTFLVTNGTV 217


>gi|313498736|gb|ADR60102.1| ScrY [Pseudomonas putida BIRD-1]
          Length = 521

 Score = 34.7 bits (78), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +++++F  L     H         F    LW+G+  DR +    + D+D V + GT GG 
Sbjct: 195 NVRQVFAELD----HLAAFKGNSMFENATLWAGKRFDRDNFDIHWLDSDVVFLAGTGGGI 250

Query: 65  YNV 67
           Y+V
Sbjct: 251 YDV 253


>gi|90422688|ref|YP_531058.1| glycyl-radical activating protein [Rhodopseudomonas palustris
           BisB18]
 gi|90104702|gb|ABD86739.1| Glycyl-radical enzyme activating [Rhodopseudomonas palustris
           BisB18]
          Length = 306

 Score = 34.7 bits (78), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 56  GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFE 113
           G    KG    V Q+   +++      + G    L+GGEPL+Q D  + L++A   +G+ 
Sbjct: 102 GALTMKGRSMTVWQVMQELQKDATNYRRSGGGITLSGGEPLVQSDFALELLKACKDKGWS 161

Query: 114 IAVETNGTI 122
            A+ET G +
Sbjct: 162 TAMETTGNV 170


>gi|197118992|ref|YP_002139419.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
 gi|197088352|gb|ACH39623.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
          Length = 471

 Score = 34.7 bits (78), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 7/82 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + QC FC  D  G +GT+    ++++++ L+E              L+GGEP L+ D
Sbjct: 100 DRCNLQCAFCFAD-AGPKGTED--PSLERISWLLERAMAAAGACSLQ--LSGGEPTLRDD 154

Query: 101 VP-LIQALNKRGFE-IAVETNG 120
           +P +++A  + GF  I V TNG
Sbjct: 155 LPEIVEAARRIGFSFIQVNTNG 176


>gi|224540942|ref|ZP_03681481.1| hypothetical protein CATMIT_00093 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526175|gb|EEF95280.1| hypothetical protein CATMIT_00093 [Catenibacterium mitsuokai DSM
           15897]
          Length = 306

 Score = 34.7 bits (78), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           +G    V+++ D+  +     E+      L+GGE ++Q D  + L+ AL ++G  +A+ET
Sbjct: 110 EGEIKTVEEVVDICMQDIDFYEESNGGVTLSGGEAMVQYDFMMALVHALKEKGLHLAIET 169

Query: 119 NGTIE 123
            G ++
Sbjct: 170 TGIVD 174


>gi|158337693|ref|YP_001518869.1| hypothetical protein AM1_4577 [Acaryochloris marina MBIC11017]
 gi|158307934|gb|ABW29551.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 324

 Score = 34.7 bits (78), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R +A+C FCD   +      G   + D +   +E+    G K   Y   TGGEPLL+ DV
Sbjct: 13  RCNARCHFCDIWALD----PGKEADFDTIEHNLEDLKRLGVK---YVDFTGGEPLLRTDV 65

Query: 102 PLI-QALNKRGFEIAVETNGTI 122
             I Q   + GF  ++ TN  +
Sbjct: 66  GRIYQTAKQLGFYTSMTTNTIL 87


>gi|290969108|ref|ZP_06560638.1| pyruvate formate-lyase 1-activating enzyme [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290780868|gb|EFD93466.1| pyruvate formate-lyase 1-activating enzyme [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 249

 Score = 34.7 bits (78), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEE--QWITGEKEGRYCVLTGGEPLLQVDV-- 101
           +CR+C       +G K   Y +   +D++ E  ++ T  K G    ++GGEPLLQ D   
Sbjct: 35  RCRYCHNPETWQEG-KYSSYTLQYASDILREALRYRTYWKNGGGITVSGGEPLLQPDFVR 93

Query: 102 PLIQALNKRGFEIAVETNG----TIEP 124
            L     +RG    ++T G    T EP
Sbjct: 94  ELFTLAKERGIHTVLDTAGNPFTTAEP 120


>gi|297155243|gb|ADI04955.1| radical SAM family protein [Streptomyces bingchenggensis BCW-1]
          Length = 170

 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 5/111 (4%)

Query: 87  YCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144
             V++GGEPL Q     P+I+AL + G  + +ETNGT+ P   +    +       L   
Sbjct: 17  LIVISGGEPLNQQSRLEPVIRALREAGIAVEIETNGTVAPQAALAAAGIRFNVSPKLAHS 76

Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
           G  E + + P+V        G  F+       D   LEE   L   +  +N
Sbjct: 77  GIAEKRRIVPEVLGEFTRLPGAAFKFVCATASD---LEEVDALVARHSLKN 124


>gi|227551205|ref|ZP_03981254.1| [formate-C-acetyltransferase]-activating enzyme [Enterococcus
           faecium TX1330]
 gi|257896172|ref|ZP_05675825.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           Com12]
 gi|293377172|ref|ZP_06623380.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           PC4.1]
 gi|227179673|gb|EEI60645.1| [formate-C-acetyltransferase]-activating enzyme [Enterococcus
           faecium TX1330]
 gi|257832737|gb|EEV59158.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           Com12]
 gi|292644192|gb|EFF62294.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           PC4.1]
          Length = 253

 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 15/89 (16%)

Query: 46  QCRFC-DTDFVGIQGTKGGRYNVDQLADLIEE---QWITGEKEGRYCVLTGGEPLLQVD- 100
           +C+FC + D   I G  G  Y+ D+L D  E     W  G+K G    ++GGEPLLQ+D 
Sbjct: 35  RCQFCHNPDTWNIGG--GKEYSADELLDKAERFRPYW--GDKGG--ITVSGGEPLLQIDF 88

Query: 101 -VPLIQALNKRGFEIAVETNG---TIEPP 125
            + L +   +R     ++T G   T E P
Sbjct: 89  LIELFKKAKERKMHTTLDTCGKPFTYEDP 117


>gi|146283853|ref|YP_001174006.1| heme d1 biosynthesis protein NirJ [Pseudomonas stutzeri A1501]
 gi|71841660|gb|AAZ43114.1| NirJ [Pseudomonas stutzeri A1501]
 gi|145572058|gb|ABP81164.1| heme d1 biosynthesis protein NirJ [Pseudomonas stutzeri A1501]
          Length = 393

 Score = 34.7 bits (78), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 86  RYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           R  +L+GGEPLL+ D+  L      +GF +A+ TNGT+
Sbjct: 78  RVLILSGGEPLLRGDIFQLADYARDKGFFVALSTNGTL 115


>gi|225849867|ref|YP_002730101.1| heme d1 biosynthesis protein NirJ [Persephonella marina EX-H1]
 gi|225645943|gb|ACO04129.1| heme d1 biosynthesis protein NirJ [Persephonella marina EX-H1]
          Length = 362

 Score = 34.7 bits (78), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 43  LSAQCR-FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           L+  C  FC   +     ++ G  ++D++   I      G K     +L+GGEPL++ D+
Sbjct: 29  LTNACNLFCQHCYSAANLSRAGEPSIDEIRSQIPYLKEAGVK---VLILSGGEPLIREDI 85

Query: 102 PLIQALNK-RGFEIAVETNGTIEPPQGIDWI 131
             I  L K  GF + + TNG +   + I+ I
Sbjct: 86  FDIANLFKENGFNVTLSTNGLLIDEKNIESI 116


>gi|268324255|emb|CBH37843.1| conserved hypothetical protein, radical SAM superfamily [uncultured
           archaeon]
          Length = 365

 Score = 34.7 bits (78), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 11/68 (16%)

Query: 56  GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEI 114
           G   T+ G+  +DQ+A++ +   I          L+GGEPLL+ DV  L +    +G  +
Sbjct: 41  GELSTEEGKMLIDQIAEVSKPILI----------LSGGEPLLRADVFELARYATGKGLTV 90

Query: 115 AVETNGTI 122
           A+ TNGT+
Sbjct: 91  AMGTNGTL 98


>gi|20088939|ref|NP_615014.1| tRNA-modifying enzyme [Methanosarcina acetivorans C2A]
 gi|19913785|gb|AAM03494.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 345

 Score = 34.7 bits (78), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 72  DLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           + + E+W+ G +     +   GEP     +P LI+   KRGF   + TNGT+
Sbjct: 142 NALRERWLEGNEPNNVAISLSGEPTFYPYLPELIEEYEKRGFTTFLVTNGTV 193


>gi|289580100|ref|YP_003478566.1| molybdenum cofactor biosynthesis protein A [Natrialba magadii ATCC
           43099]
 gi|289529653|gb|ADD04004.1| molybdenum cofactor biosynthesis protein A [Natrialba magadii ATCC
           43099]
          Length = 341

 Score = 34.7 bits (78), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 8/105 (7%)

Query: 41  DRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR +  C +C  + +G  +G    + +  +  D++    +  E +      TGGEP+L+ 
Sbjct: 19  DRCNFDCVYCHNEGLGDTRGPMDPQDDEMETDDVVRFLEVAAEFDVDAVKFTGGEPMLRQ 78

Query: 100 DVPLIQALNKRGFEIAVETNGTIEPPQ-------GIDWICVSPKA 137
           D+  I        E+++ TNGT  P +       G+D + VS  A
Sbjct: 79  DLTEIIERTPEQMEVSLTTNGTFLPGRAEELVDAGLDRVNVSQDA 123


>gi|319789546|ref|YP_004151179.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
 gi|317114048|gb|ADU96538.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
          Length = 219

 Score = 34.7 bits (78), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 11/52 (21%)

Query: 3  LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF 54
          + +I E F+++QGEG   G  A F R   C           S  CRFCDT +
Sbjct: 1  MITICETFVSVQGEGLTVGTPAFFIRTGKC-----------SVGCRFCDTKY 41


>gi|327400235|ref|YP_004341074.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Archaeoglobus veneficus SNP6]
 gi|327315743|gb|AEA46359.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Archaeoglobus veneficus SNP6]
          Length = 232

 Score = 34.7 bits (78), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 13/97 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
           +C FC    +   GTK    +V  L   I E ++        C+ TGGEPL+Q    L +
Sbjct: 30  RCPFCHNHELLAGGTK---TDVSGLIGKISENYLID----GVCI-TGGEPLMQNIEDLCK 81

Query: 106 ALNKRGFEIAVETNGTIEPPQG-----IDWICVSPKA 137
            L   GF + ++TNG      G     +D++ +  K 
Sbjct: 82  KLKDAGFAVKIDTNGYYTEELGKILDYVDYVAIDLKT 118


>gi|195541852|gb|ACF98054.1| putative heme D1 biosynthesis protein NirJ [uncultured bacterium
           888]
          Length = 411

 Score = 34.7 bits (78), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 16/97 (16%)

Query: 42  RLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
           R +  CR C     DT+F G   T      +D L             E R  +L+GGEPL
Sbjct: 35  RCNLACRHCYSISADTNFPGELSTAEVFAVLDDLY----------ASEVRVLILSGGEPL 84

Query: 97  LQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
           L+ D+  +++     GF I + +NGT+   + I  I 
Sbjct: 85  LRPDLFRIVRRAKSMGFYIGLSSNGTLIGAENITSIA 121


>gi|194016213|ref|ZP_03054827.1| molybdenum cofactor biosynthesis protein A [Bacillus pumilus ATCC
           7061]
 gi|194011686|gb|EDW21254.1| molybdenum cofactor biosynthesis protein A [Bacillus pumilus ATCC
           7061]
          Length = 305

 Score = 34.7 bits (78), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 29/38 (76%), Gaps = 3/38 (7%)

Query: 90  LTGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEP 124
           +TGGEPL++ D+P LI+ L+K  G E IA+ TNGT+ P
Sbjct: 42  ITGGEPLMRKDLPILIEKLSKIPGIEDIAMTTNGTLLP 79


>gi|257898809|ref|ZP_05678462.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           Com15]
 gi|293570288|ref|ZP_06681357.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E980]
 gi|257836721|gb|EEV61795.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           Com15]
 gi|291609695|gb|EFF38956.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E980]
          Length = 253

 Score = 34.3 bits (77), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 15/89 (16%)

Query: 46  QCRFC-DTDFVGIQGTKGGRYNVDQLADLIEE---QWITGEKEGRYCVLTGGEPLLQVD- 100
           +C+FC + D   I G  G  Y+ D+L D  E     W  G+K G    ++GGEPLLQ+D 
Sbjct: 35  RCQFCHNPDTWNIGG--GKEYSADELLDKAERFRPYW--GDKGG--ITVSGGEPLLQIDF 88

Query: 101 -VPLIQALNKRGFEIAVETNG---TIEPP 125
            + L +   +R     ++T G   T E P
Sbjct: 89  LIELFKKAKEREMHTTLDTCGKPFTYEEP 117


>gi|69248399|ref|ZP_00604735.1| Formate acetyltransferase activating enzyme [Enterococcus faecium
           DO]
 gi|257878034|ref|ZP_05657687.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,230,933]
 gi|257881180|ref|ZP_05660833.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,502]
 gi|257884843|ref|ZP_05664496.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,501]
 gi|257889767|ref|ZP_05669420.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,410]
 gi|257892296|ref|ZP_05671949.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,408]
 gi|258616472|ref|ZP_05714242.1| pyruvate formate-lyase activating enzyme [Enterococcus faecium DO]
 gi|260559084|ref|ZP_05831270.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           C68]
 gi|293563436|ref|ZP_06677885.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1162]
 gi|293568151|ref|ZP_06679487.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1071]
 gi|294622318|ref|ZP_06701361.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           U0317]
 gi|314938046|ref|ZP_07845356.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133a04]
 gi|314941968|ref|ZP_07848829.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133C]
 gi|314948779|ref|ZP_07852151.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0082]
 gi|314951797|ref|ZP_07854836.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133A]
 gi|314991796|ref|ZP_07857254.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133B]
 gi|314995837|ref|ZP_07860924.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133a01]
 gi|68194435|gb|EAN08938.1| Formate acetyltransferase activating enzyme [Enterococcus faecium
           DO]
 gi|257812262|gb|EEV41020.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,230,933]
 gi|257816838|gb|EEV44166.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,502]
 gi|257820681|gb|EEV47829.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,501]
 gi|257826127|gb|EEV52753.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,410]
 gi|257828675|gb|EEV55282.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,408]
 gi|260074841|gb|EEW63157.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           C68]
 gi|291589141|gb|EFF20953.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1071]
 gi|291598210|gb|EFF29308.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           U0317]
 gi|291604697|gb|EFF34182.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1162]
 gi|313589941|gb|EFR68786.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133a01]
 gi|313593607|gb|EFR72452.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133B]
 gi|313596076|gb|EFR74921.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133A]
 gi|313599220|gb|EFR78065.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133C]
 gi|313642621|gb|EFS07201.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133a04]
 gi|313644845|gb|EFS09425.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0082]
          Length = 253

 Score = 34.3 bits (77), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 15/89 (16%)

Query: 46  QCRFC-DTDFVGIQGTKGGRYNVDQLADLIEE---QWITGEKEGRYCVLTGGEPLLQVD- 100
           +C+FC + D   I G  G  Y  D+L D  E     W  G+K G    ++GGEPLLQ+D 
Sbjct: 35  RCQFCHNPDTWNIGG--GKEYTADELLDKAERFRPYW--GDKGG--ITVSGGEPLLQIDF 88

Query: 101 -VPLIQALNKRGFEIAVETNG---TIEPP 125
            + L +   +R     ++T G   T E P
Sbjct: 89  LIELFKKAKERKMHTTLDTCGKPFTYEEP 117


>gi|218780153|ref|YP_002431471.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761537|gb|ACL04003.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 230

 Score = 34.3 bits (77), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 6/57 (10%)

Query: 71  ADLIEEQWITG---EKEGRY--CVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
           A +I+  W+     E++G     V+TGGEP L  D +  + A+   GFE+ ++TNG+
Sbjct: 45  AQVIKNNWVMSFLKERKGFLDGVVITGGEPTLHKDLMDFMAAIKDMGFELKLDTNGS 101


Searching..................................................done


Results from round 2




>gi|254780202|ref|YP_003064615.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039879|gb|ACT56675.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 211

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 211/211 (100%), Positives = 211/211 (100%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT
Sbjct: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG
Sbjct: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF
Sbjct: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           LEENTNLAISYCFQNPKWRLSVQTHKFIGIR
Sbjct: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211


>gi|315122629|ref|YP_004063118.1| hypothetical protein CKC_04405 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496031|gb|ADR52630.1| hypothetical protein CKC_04405 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 211

 Score =  350 bits (898), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 172/211 (81%), Positives = 188/211 (89%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MKLYS+KEIFLTLQGEG   GRVAVFCRFSGCNLWSGRE+DRL AQCRFCDTDFVG +GT
Sbjct: 1   MKLYSVKEIFLTLQGEGAQVGRVAVFCRFSGCNLWSGREKDRLFAQCRFCDTDFVGTKGT 60

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
            GGRY+ +QLADLI   WI  EKE RYCVLTGGEPLLQVD  LI+ALNKR F I+VETNG
Sbjct: 61  MGGRYSAEQLADLIASAWIPEEKEERYCVLTGGEPLLQVDSALIKALNKRNFTISVETNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           TI+PP+GIDWICVSPKAGCDLK+K GQELKLVFPQV+  PENYI FDF+ FSLQPMDG F
Sbjct: 121 TIKPPEGIDWICVSPKAGCDLKVKNGQELKLVFPQVDAPPENYIDFDFDIFSLQPMDGSF 180

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           L+ENTNLAISYCF+NPKWR+S+QTHKFIGIR
Sbjct: 181 LKENTNLAISYCFKNPKWRVSLQTHKFIGIR 211


>gi|92118709|ref|YP_578438.1| hypothetical protein Nham_3243 [Nitrobacter hamburgensis X14]
 gi|91801603|gb|ABE63978.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 210

 Score =  344 bits (883), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 141/209 (67%), Positives = 164/209 (78%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG+ GT+GG
Sbjct: 3   YAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWSGREEDRTSAICRFCDTDFVGMDGTRGG 62

Query: 64  RYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY   D+LAD +  QW TG    RY VLTGGEPLLQVD   + AL+ RGFEI +ETNGTI
Sbjct: 63  RYAAADELADTVAAQW-TGSAPHRYAVLTGGEPLLQVDKAFVDALHARGFEIGIETNGTI 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
            PP GIDW+CVSPKAG DL++  G ELKLV+PQ    PE++    FERFSLQPMDGP   
Sbjct: 122 VPPDGIDWLCVSPKAGADLRVTKGHELKLVYPQAGARPEDFKDLAFERFSLQPMDGPDAA 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT  AI YC ++P+WRLS+QTHK +GIR
Sbjct: 182 DNTARAIDYCMRHPQWRLSLQTHKTLGIR 210


>gi|75676803|ref|YP_319224.1| hypothetical protein Nwi_2619 [Nitrobacter winogradskyi Nb-255]
 gi|74421673|gb|ABA05872.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 210

 Score =  343 bits (881), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 140/209 (66%), Positives = 163/209 (77%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR AVFCRFSGCNLWSGRE+DR SA CRFCDTDFVG  GT GG
Sbjct: 3   YAVKEIFLTLQGEGAHAGRAAVFCRFSGCNLWSGREEDRASATCRFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY + D LAD +  QW  G    RY VLTGGEPLLQVD   + AL+ RGFEI +ETNGT+
Sbjct: 63  RYASADALADTVAGQW-AGPAAHRYAVLTGGEPLLQVDKAFVDALHARGFEIGIETNGTL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
            PP GIDW+CVSPKAG DL+I+ G ELKLV+PQ +  PE++    F+RFSLQPMDGP   
Sbjct: 122 APPDGIDWLCVSPKAGADLRIRRGHELKLVYPQADARPEDFADLAFDRFSLQPMDGPDAA 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           ENT  A+ YC ++P+WRLS+QTHK +GIR
Sbjct: 182 ENTARAVDYCLRHPQWRLSLQTHKTLGIR 210


>gi|192289792|ref|YP_001990397.1| hypothetical protein Rpal_1382 [Rhodopseudomonas palustris TIE-1]
 gi|192283541|gb|ACE99921.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 210

 Score =  340 bits (873), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 139/209 (66%), Positives = 167/209 (79%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR AVFCRF+GCNLW+GREQDR  A C+FCDTDF+G  GT GG
Sbjct: 3   YAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWTGREQDRDQATCKFCDTDFIGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY + + LAD I EQW+ G+   RY V+TGGEPLLQ+D  LI AL+ RGF I VETNGTI
Sbjct: 63  RYASAEHLADTIAEQWV-GDARDRYVVITGGEPLLQLDGELITALHARGFAIGVETNGTI 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           EPP GIDW+CVSPKAG +L+I+ G ELKLV+PQ +  PE +   +FERFSLQPMDGP  +
Sbjct: 122 EPPAGIDWLCVSPKAGAELRIRRGDELKLVYPQPDAMPEEFAALEFERFSLQPMDGPDRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT  AI+YC ++P+WRLS+QTHK  GIR
Sbjct: 182 DNTTRAIAYCLKHPQWRLSLQTHKITGIR 210


>gi|27377594|ref|NP_769123.1| hypothetical protein bll2483 [Bradyrhizobium japonicum USDA 110]
 gi|27350739|dbj|BAC47748.1| bll2483 [Bradyrhizobium japonicum USDA 110]
          Length = 210

 Score =  339 bits (870), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 140/209 (66%), Positives = 161/209 (77%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR +VFCRF+GCNLWSGRE DR  A C+FCDTDFVG  GT GG
Sbjct: 3   YAVKEIFLTLQGEGAHAGRASVFCRFAGCNLWSGREADRQDATCKFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY +  +LAD I  QW T   + RY VLTGGEPLLQVD  LI AL+ RGFEI VETNGTI
Sbjct: 63  RYASAVELADTIAAQW-TASNDNRYVVLTGGEPLLQVDDALIDALHARGFEIGVETNGTI 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P G+DWICVSPK G +L ++ G ELKLV+PQ   +PE + G  FERFSLQPMDGP + 
Sbjct: 122 AAPDGLDWICVSPKGGSELVLRRGHELKLVYPQALAAPETFEGLAFERFSLQPMDGPEVA 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           ENT  AI YC ++P+WRLSVQTHK +GIR
Sbjct: 182 ENTARAIDYCLRHPQWRLSVQTHKSLGIR 210


>gi|154253588|ref|YP_001414412.1| hypothetical protein Plav_3149 [Parvibaculum lavamentivorans DS-1]
 gi|154157538|gb|ABS64755.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1]
          Length = 210

 Score =  338 bits (868), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 135/209 (64%), Positives = 155/209 (74%), Gaps = 1/209 (0%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +YS+KEIF TLQGEG +AGR +VFCRFSGCNLWSGRE+DR  A C FCDTDFVG  G  G
Sbjct: 1   MYSVKEIFYTLQGEGANAGRPSVFCRFSGCNLWSGREEDRADAVCTFCDTDFVGTNGEGG 60

Query: 63  GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           G++ +V  LAD IE+ W +G    R+ V TGGEPLLQ+D PLI AL+ RGFEIAVETNGT
Sbjct: 61  GKFRDVAALADAIEKTWESGAAHNRFVVCTGGEPLLQLDAPLIAALHSRGFEIAVETNGT 120

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           I  P+GIDWICVSPKA  +LK   G ELKLV+PQ    PE +   DF  F LQPMDG   
Sbjct: 121 IVAPEGIDWICVSPKADAELKQTSGHELKLVYPQHKAQPERFEQLDFRYFYLQPMDGADA 180

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           EENT  A +YC  +PKWRLS+QTHK IGI
Sbjct: 181 EENTRAATAYCLAHPKWRLSLQTHKLIGI 209


>gi|39934265|ref|NP_946541.1| hypothetical protein RPA1190 [Rhodopseudomonas palustris CGA009]
 gi|39648113|emb|CAE26633.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
          Length = 210

 Score =  338 bits (867), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 139/209 (66%), Positives = 167/209 (79%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR AVFCRF+GCNLW+GREQDR  A C+FCDTDF+G  GT GG
Sbjct: 3   YAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWTGREQDRDQATCKFCDTDFIGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY + + LAD I EQW+ G+   RY V+TGGEPLLQ+D  LI AL+ RGF I VETNGTI
Sbjct: 63  RYASAEHLADTIAEQWV-GDARDRYVVITGGEPLLQLDGELITALHARGFAIGVETNGTI 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           EPP GIDW+CVSPKAG +L+I+ G ELKLV+PQ +  PE +   +FERFSLQPMDGP  +
Sbjct: 122 EPPVGIDWLCVSPKAGAELRIRRGDELKLVYPQPDAMPEEFAALEFERFSLQPMDGPERD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT  AI+YC ++P+WRLS+QTHK  GIR
Sbjct: 182 DNTTRAIAYCLKHPQWRLSLQTHKITGIR 210


>gi|53717820|ref|YP_106806.1| hypothetical protein BPSL0178 [Burkholderia pseudomallei K96243]
 gi|53724959|ref|YP_101992.1| hypothetical protein BMA0153 [Burkholderia mallei ATCC 23344]
 gi|67642462|ref|ZP_00441218.1| organic radical activating enzyme [Burkholderia mallei GB8 horse 4]
 gi|76808972|ref|YP_331771.1| GntS [Burkholderia pseudomallei 1710b]
 gi|121598296|ref|YP_994090.1| hypothetical protein BMASAVP1_A2794 [Burkholderia mallei SAVP1]
 gi|124385117|ref|YP_001028247.1| hypothetical protein BMA10229_A2285 [Burkholderia mallei NCTC
           10229]
 gi|126439185|ref|YP_001057215.1| organic radical activating protein [Burkholderia pseudomallei 668]
 gi|126450309|ref|YP_001081890.1| hypothetical protein BMA10247_2364 [Burkholderia mallei NCTC 10247]
 gi|134284085|ref|ZP_01770779.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
 gi|167717531|ref|ZP_02400767.1| hypothetical protein BpseD_00837 [Burkholderia pseudomallei DM98]
 gi|167736572|ref|ZP_02409346.1| hypothetical protein Bpse14_00837 [Burkholderia pseudomallei 14]
 gi|167813673|ref|ZP_02445353.1| hypothetical protein Bpse9_00961 [Burkholderia pseudomallei 91]
 gi|167822191|ref|ZP_02453662.1| hypothetical protein Bpseu9_00842 [Burkholderia pseudomallei 9]
 gi|167892283|ref|ZP_02479685.1| hypothetical protein Bpse7_00882 [Burkholderia pseudomallei 7894]
 gi|167900778|ref|ZP_02487983.1| hypothetical protein BpseN_00787 [Burkholderia pseudomallei NCTC
           13177]
 gi|167917042|ref|ZP_02504133.1| hypothetical protein BpseBC_00742 [Burkholderia pseudomallei
           BCC215]
 gi|217424912|ref|ZP_03456408.1| conserved hypothetical protein [Burkholderia pseudomallei 576]
 gi|226194613|ref|ZP_03790208.1| conserved hypothetical protein [Burkholderia pseudomallei Pakistan
           9]
 gi|237810350|ref|YP_002894801.1| radical SAM domain protein [Burkholderia pseudomallei MSHR346]
 gi|251767984|ref|ZP_02269071.2| conserved hypothetical protein [Burkholderia mallei PRL-20]
 gi|254176794|ref|ZP_04883451.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399]
 gi|254182243|ref|ZP_04888840.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
 gi|254188167|ref|ZP_04894679.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254203672|ref|ZP_04910032.1| conserved hypothetical protein [Burkholderia mallei FMH]
 gi|254208648|ref|ZP_04914996.1| conserved hypothetical protein [Burkholderia mallei JHU]
 gi|254258885|ref|ZP_04949939.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a]
 gi|254360298|ref|ZP_04976568.1| conserved hypothetical protein [Burkholderia mallei 2002721280]
 gi|52208234|emb|CAH34165.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|52428382|gb|AAU48975.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344]
 gi|76578425|gb|ABA47900.1| GntS [Burkholderia pseudomallei 1710b]
 gi|121227106|gb|ABM49624.1| conserved hypothetical protein [Burkholderia mallei SAVP1]
 gi|124293137|gb|ABN02406.1| conserved hypothetical protein [Burkholderia mallei NCTC 10229]
 gi|126218678|gb|ABN82184.1| conserved hypothetical protein [Burkholderia pseudomallei 668]
 gi|126243179|gb|ABO06272.1| conserved hypothetical protein [Burkholderia mallei NCTC 10247]
 gi|134244537|gb|EBA44641.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
 gi|147745184|gb|EDK52264.1| conserved hypothetical protein [Burkholderia mallei FMH]
 gi|147750524|gb|EDK57593.1| conserved hypothetical protein [Burkholderia mallei JHU]
 gi|148029538|gb|EDK87443.1| conserved hypothetical protein [Burkholderia mallei 2002721280]
 gi|157935847|gb|EDO91517.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|160697835|gb|EDP87805.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399]
 gi|184212781|gb|EDU09824.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
 gi|217391932|gb|EEC31958.1| conserved hypothetical protein [Burkholderia pseudomallei 576]
 gi|225933314|gb|EEH29306.1| conserved hypothetical protein [Burkholderia pseudomallei Pakistan
           9]
 gi|237506322|gb|ACQ98640.1| radical SAM domain protein [Burkholderia pseudomallei MSHR346]
 gi|238523620|gb|EEP87057.1| organic radical activating enzyme [Burkholderia mallei GB8 horse 4]
 gi|243061139|gb|EES43325.1| conserved hypothetical protein [Burkholderia mallei PRL-20]
 gi|254217574|gb|EET06958.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a]
          Length = 210

 Score =  336 bits (863), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 119/210 (56%), Positives = 147/210 (70%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDGAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++ +   LA  I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GF IA+ETNG
Sbjct: 61  GGKFKDAASLAARIASLWPAGEAY-RFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++   + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP 
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            E NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RELNTRLAIDWCKRHPRWRLSMQTHKYLNI 209


>gi|126452181|ref|YP_001064455.1| hypothetical protein BURPS1106A_0172 [Burkholderia pseudomallei
           1106a]
 gi|167843783|ref|ZP_02469291.1| hypothetical protein BpseB_00735 [Burkholderia pseudomallei B7210]
 gi|167909000|ref|ZP_02496091.1| hypothetical protein Bpse112_00785 [Burkholderia pseudomallei 112]
 gi|242315880|ref|ZP_04814896.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b]
 gi|254197017|ref|ZP_04903441.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
 gi|254295716|ref|ZP_04963173.1| conserved hypothetical protein [Burkholderia pseudomallei 406e]
 gi|126225823|gb|ABN89363.1| conserved hypothetical protein [Burkholderia pseudomallei 1106a]
 gi|157806282|gb|EDO83452.1| conserved hypothetical protein [Burkholderia pseudomallei 406e]
 gi|169653760|gb|EDS86453.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
 gi|242139119|gb|EES25521.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b]
          Length = 210

 Score =  336 bits (862), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 119/210 (56%), Positives = 147/210 (70%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDGAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++ +   LA  I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GF IA+ETNG
Sbjct: 61  GGKFEDAASLAARIASLWPAGEAY-RFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++   + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP 
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            E NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RELNTRLAIDWCKRHPRWRLSMQTHKYLNI 209


>gi|167834987|ref|ZP_02461870.1| hypothetical protein Bpse38_00765 [Burkholderia thailandensis
           MSMB43]
          Length = 210

 Score =  335 bits (861), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 119/210 (56%), Positives = 148/210 (70%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDGAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++ +   LA+ I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GF IA+ETNG
Sbjct: 61  GGKFKDAASLAEKIASLWPAGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++   + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP 
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQHLADYAKLDFEHFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            E NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RELNTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|311106693|ref|YP_003979546.1| radical SAM superfamily protein 3 [Achromobacter xylosoxidans A8]
 gi|310761382|gb|ADP16831.1| radical SAM superfamily protein 3 [Achromobacter xylosoxidans A8]
          Length = 226

 Score =  335 bits (861), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 128/210 (60%), Positives = 152/210 (72%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS KEIF TLQGEG HAGR AVFCRF+GCNLW+GRE DR SA C FCDTDF+G  G  
Sbjct: 17  MTYSAKEIFKTLQGEGAHAGRAAVFCRFAGCNLWTGRESDRASAACTFCDTDFIGTDGEG 76

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++   + LAD I   W  G  + RY V TGGEPLLQ+D PL+ A++ RGF IA+ETNG
Sbjct: 77  GGKFATPELLADAIAAAWGPGATD-RYVVFTGGEPLLQLDAPLLTAVHARGFTIAIETNG 135

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           TI+PP GIDWICVSPK    + ++ G ELKLV+PQ N  PE +   DF+ F LQPMDGP 
Sbjct: 136 TIKPPAGIDWICVSPKGTAPVVLERGDELKLVYPQANARPEAFAHLDFDHFFLQPMDGPA 195

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              NT  A+ YC Q+P+WRLS+QTHK+IGI
Sbjct: 196 RAANTEQAVQYCMQHPQWRLSLQTHKYIGI 225


>gi|209515825|ref|ZP_03264687.1| Radical SAM domain protein [Burkholderia sp. H160]
 gi|209503673|gb|EEA03667.1| Radical SAM domain protein [Burkholderia sp. H160]
          Length = 210

 Score =  335 bits (860), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 124/210 (59%), Positives = 151/210 (71%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG+Y   D+L  +I  QW  GE E R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG
Sbjct: 61  GGKYRTPDELVAMIASQWPQGEGE-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++     IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP 
Sbjct: 120 SLPVLDTIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + NT LAI +C ++PKWRLS+QTHK++ I
Sbjct: 180 RDLNTKLAIDWCKRHPKWRLSMQTHKYLNI 209


>gi|221201867|ref|ZP_03574904.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
 gi|221207627|ref|ZP_03580635.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221172473|gb|EEE04912.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221178287|gb|EEE10697.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
          Length = 210

 Score =  335 bits (859), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 120/210 (57%), Positives = 149/210 (70%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAQAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++ + D L   I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG
Sbjct: 61  GGKFKDADALVATIASLWPDGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++   + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP 
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|83720295|ref|YP_440696.1| hypothetical protein BTH_I0138 [Burkholderia thailandensis E264]
 gi|167579367|ref|ZP_02372241.1| hypothetical protein BthaT_14560 [Burkholderia thailandensis TXDOH]
 gi|167617468|ref|ZP_02386099.1| hypothetical protein BthaB_14260 [Burkholderia thailandensis Bt4]
 gi|257140656|ref|ZP_05588918.1| hypothetical protein BthaA_15810 [Burkholderia thailandensis E264]
 gi|83654120|gb|ABC38183.1| conserved hypothetical protein [Burkholderia thailandensis E264]
          Length = 210

 Score =  335 bits (859), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 119/210 (56%), Positives = 147/210 (70%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRGDAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++ +   LA  I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GF IA+ETNG
Sbjct: 61  GGKFKDAASLAAKIASLWPPGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++   + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP 
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            E NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RELNTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|91975780|ref|YP_568439.1| hypothetical protein RPD_1300 [Rhodopseudomonas palustris BisB5]
 gi|91682236|gb|ABE38538.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 210

 Score =  335 bits (859), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 142/209 (67%), Positives = 164/209 (78%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR +VFCRF+GCNLW+GREQDR  A CRFCDTDFVG  GT GG
Sbjct: 3   YAVKEIFLTLQGEGAHAGRASVFCRFAGCNLWTGREQDRDQAACRFCDTDFVGTDGTLGG 62

Query: 64  RYNVD-QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY    +LA  I  QW   E + RY V+TGGEPLLQ+D  LI AL K+GF I VETNGTI
Sbjct: 63  RYTDAGELAGAIAAQWAGAELD-RYVVITGGEPLLQLDAELIAALQKQGFAIGVETNGTI 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           EPP GIDW+CVSPKAG +L++K G ELKLV+PQ    PE +   DFERFSLQPMDGP  +
Sbjct: 122 EPPPGIDWLCVSPKAGAELRVKRGNELKLVYPQPGAMPEQFAALDFERFSLQPMDGPARD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           E+T LAI+YC ++P+WRLSVQTHK IGIR
Sbjct: 182 EHTRLAIAYCLRHPQWRLSVQTHKTIGIR 210


>gi|85714274|ref|ZP_01045262.1| hypothetical protein NB311A_15022 [Nitrobacter sp. Nb-311A]
 gi|85698721|gb|EAQ36590.1| hypothetical protein NB311A_15022 [Nitrobacter sp. Nb-311A]
          Length = 210

 Score =  334 bits (858), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 142/209 (67%), Positives = 161/209 (77%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y+IKE+FLTLQGEG HAGR AVFCRFSGCNLWSGRE+DR SA C FCDTDFVG  GT GG
Sbjct: 3   YAIKEVFLTLQGEGAHAGRAAVFCRFSGCNLWSGREKDRASATCAFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY   D LA+ +  QWI G    RY VLTGGEPLLQVD   I AL+ R FEI +ETNGTI
Sbjct: 63  RYDTADALAETVAAQWI-GPAAHRYAVLTGGEPLLQVDKAFIDALHARRFEIGIETNGTI 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
            PP GIDW+CVSPKAG DL++  G ELKLV+PQ N+ PE++    FERFSLQPMDGP   
Sbjct: 122 VPPDGIDWLCVSPKAGADLRVTKGHELKLVYPQENIRPEDFKDLAFERFSLQPMDGPDAA 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT  AI YC ++P+WRLS+QTHK IGIR
Sbjct: 182 DNTARAIDYCLRHPQWRLSLQTHKTIGIR 210


>gi|295675134|ref|YP_003603658.1| Radical SAM domain protein [Burkholderia sp. CCGE1002]
 gi|295434977|gb|ADG14147.1| Radical SAM domain protein [Burkholderia sp. CCGE1002]
          Length = 210

 Score =  334 bits (858), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 123/210 (58%), Positives = 151/210 (71%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG+Y   D+L  +I  QW  GE E R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG
Sbjct: 61  GGKYRTPDELVAMIASQWPQGEGE-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++     IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP 
Sbjct: 120 SLPVLDTIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDINTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|86748323|ref|YP_484819.1| hypothetical protein RPB_1198 [Rhodopseudomonas palustris HaA2]
 gi|86571351|gb|ABD05908.1| Radical SAM [Rhodopseudomonas palustris HaA2]
          Length = 210

 Score =  334 bits (857), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 138/209 (66%), Positives = 167/209 (79%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR +VFCRF+GCNLW+GREQDR  A C+FCDTDFVG  GT GG
Sbjct: 3   YAVKEIFLTLQGEGAHAGRASVFCRFAGCNLWTGREQDRHDAVCQFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY +  +LAD I  QW+  + + RY V+TGGEPLLQ+D  LI AL+K+GFE+ VETNGTI
Sbjct: 63  RYGDAGKLADTIAAQWVGADTD-RYVVITGGEPLLQLDAELIDALHKQGFEVGVETNGTI 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           EPP GIDW+CVSPKAG  ++++ G ELKLV+PQ +  PE +   DFERFSLQPMDGP  +
Sbjct: 122 EPPAGIDWLCVSPKAGTQIRVQCGNELKLVYPQPDAMPEQFTSLDFERFSLQPMDGPDRD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT  AI YC ++P+WRLSVQTHK IGIR
Sbjct: 182 DNTRRAIDYCLRHPQWRLSVQTHKVIGIR 210


>gi|238028936|ref|YP_002913167.1| hypothetical protein bglu_1g34010 [Burkholderia glumae BGR1]
 gi|237878130|gb|ACR30463.1| Hypothetical protein bglu_1g34010 [Burkholderia glumae BGR1]
          Length = 210

 Score =  334 bits (857), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 122/210 (58%), Positives = 150/210 (71%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR SA CRFCDTDFVG  G  
Sbjct: 1   MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDSAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++   + LAD +   W  GE   R+ V TGGEP+LQ+D PL+ AL+ RGFEIA+ETNG
Sbjct: 61  GGKFRTPELLADQVAALWPAGEAH-RFVVCTGGEPMLQLDQPLVDALHARGFEIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++     IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP 
Sbjct: 120 SLPVLDTIDWICVSPKADAPLVVTRGHELKVVIPQDNQRLADYARLDFEHFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            E NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RELNTRLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|316932735|ref|YP_004107717.1| Radical SAM domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315600449|gb|ADU42984.1| Radical SAM domain protein [Rhodopseudomonas palustris DX-1]
          Length = 210

 Score =  334 bits (857), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 141/209 (67%), Positives = 164/209 (78%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR AVFCRF+GCNLW+GREQDR  A C+FCDTDF+G  GT GG
Sbjct: 3   YAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWTGREQDRDEATCKFCDTDFIGTDGTLGG 62

Query: 64  RYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY   + LAD I EQW TG+   RY V+TGGEPLLQ+D  LI AL+ RGF I VETNGTI
Sbjct: 63  RYAGAELLADTIAEQW-TGDPRKRYVVITGGEPLLQLDGELIAALHTRGFAIGVETNGTI 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           EPP GIDW+CVSPKAG +L+I+ G ELKLV+PQ    PE +   DFERFSLQPMDGP  +
Sbjct: 122 EPPDGIDWLCVSPKAGAELRIRRGDELKLVYPQPGAMPEQFAALDFERFSLQPMDGPERD 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT  AI+YC  +P+WRLS+QTHK  GIR
Sbjct: 182 DNTTRAIAYCLMHPQWRLSLQTHKITGIR 210


>gi|167561072|ref|ZP_02353988.1| hypothetical protein BoklE_00844 [Burkholderia oklahomensis EO147]
          Length = 210

 Score =  334 bits (857), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 118/210 (56%), Positives = 148/210 (70%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRDGAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++ + + LA  I   W  GE   R+ V TGGEP+LQ+D  L+ AL+  GF IA+ETNG
Sbjct: 61  GGKFKDAESLAAQIASLWPEGEAH-RFVVCTGGEPMLQLDQALVDALHAAGFTIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++   + IDW+CVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP 
Sbjct: 120 SLPVLESIDWVCVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + NT LAI +C ++PKWRLS+QTHK++ I
Sbjct: 180 RDFNTKLAIDWCKRHPKWRLSMQTHKYLNI 209


>gi|167568301|ref|ZP_02361175.1| hypothetical protein BoklC_00570 [Burkholderia oklahomensis C6786]
          Length = 210

 Score =  333 bits (856), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 118/210 (56%), Positives = 148/210 (70%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRDGAVCRFCDTDFVGADGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++ + + LA  I   W  GE   R+ V TGGEP+LQ+D  L+ AL+  GF IA+ETNG
Sbjct: 61  GGKFKDAESLAAQIASLWPEGEAH-RFVVCTGGEPMLQLDQALVDALHAAGFTIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++   + IDW+CVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP 
Sbjct: 120 SLPVLESIDWVCVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + NT LAI +C ++PKWRLS+QTHK++ I
Sbjct: 180 RDFNTKLAIDWCKRHPKWRLSMQTHKYLNI 209


>gi|148261740|ref|YP_001235867.1| organic radical activating-like protein [Acidiphilium cryptum JF-5]
 gi|146403421|gb|ABQ31948.1| Organic radical activating enzymes-like protein [Acidiphilium
           cryptum JF-5]
          Length = 211

 Score =  333 bits (855), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 130/208 (62%), Positives = 153/208 (73%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG  G  GG
Sbjct: 3   YSVKEIFPTLQGEGRNAGRAAVFCRFAGCNLWSGREEDRASATCRFCDTDFVGTDGPGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+ +   LA  I+  W          V TGGEPLLQ+D PLI+A++  GFEIAVETNGTI
Sbjct: 63  RFADAAGLARAIQAAWSAACTRDALVVFTGGEPLLQLDAPLIEAVHDAGFEIAVETNGTI 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           EPP GIDW+CVSPK G +L ++ G ELKLV+PQ   +PE + G DF  F LQPMDGP   
Sbjct: 123 EPPPGIDWLCVSPKEGAELVVRQGSELKLVYPQKEATPERFAGLDFAHFLLQPMDGPDRA 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT  AI YC  +P+WRLS+QTHK++GI
Sbjct: 183 ANTRAAIEYCLTHPQWRLSMQTHKYLGI 210


>gi|17546168|ref|NP_519570.1| hypothetical protein RSc1449 [Ralstonia solanacearum GMI1000]
 gi|17428464|emb|CAD15151.1| probable organic radical activating enzyme protein [Ralstonia
           solanacearum GMI1000]
          Length = 212

 Score =  333 bits (854), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 125/212 (58%), Positives = 147/212 (69%), Gaps = 2/212 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG  GT 
Sbjct: 1   MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRAAAICQFCDTDFVGTDGTL 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           GG+Y   D LAD +  QW      GR   V TGGEPLLQ+D PLI AL+ RGFEIA+ETN
Sbjct: 61  GGKYPTADALADTVAAQWPAAATGGRPLVVCTGGEPLLQLDRPLIDALHARGFEIAIETN 120

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GT+  P GIDW+CVSPK G +L +  G ELK+V PQ     + Y   DF  F LQPMDGP
Sbjct: 121 GTLAVPDGIDWVCVSPKMGAELVVTRGDELKVVIPQPGQDLDAYERLDFRHFFLQPMDGP 180

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               NT LA+  C + P+W LS+QTHK +GIR
Sbjct: 181 LARRNTALAVELCQRRPRWHLSLQTHKMLGIR 212


>gi|325518103|gb|EGC97893.1| organic radical activating enzyme-like protein [Burkholderia sp.
           TJI49]
          Length = 210

 Score =  333 bits (854), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 120/210 (57%), Positives = 149/210 (70%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++ + D L   I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG
Sbjct: 61  GGKFKDADALVATIAGLWPDGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++   + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP 
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|221214677|ref|ZP_03587647.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
 gi|221165567|gb|EED98043.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
          Length = 210

 Score =  333 bits (854), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 120/210 (57%), Positives = 149/210 (70%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAQAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++ + D L   I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG
Sbjct: 61  GGKFKDADALVATIAGLWPDGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++   + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP 
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|194289720|ref|YP_002005627.1| hypothetical protein RALTA_A1615 [Cupriavidus taiwanensis LMG
           19424]
 gi|193223555|emb|CAQ69560.1| conserved hypothetical protein, NrdG domain (Organic radical
           activating enzymes) [Cupriavidus taiwanensis LMG 19424]
          Length = 211

 Score =  332 bits (853), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 122/211 (57%), Positives = 151/211 (71%), Gaps = 1/211 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR SA C+FCDTDFVG  GT+
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRAAVFCRFAGCNLWSGREEDRASAVCQFCDTDFVGTDGTR 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG+Y    +LA ++  +W  G       V TGGEPLLQ+D PLI+AL+  GFEIA+ETNG
Sbjct: 61  GGKYRTAAELAAVVASEWPQGAGGKPLVVCTGGEPLLQLDAPLIEALHAHGFEIAIETNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           TI  P GIDW+CVSPK G +L +  G ELK+V PQ       Y   DF  F +Q MDGP 
Sbjct: 121 TIAVPPGIDWVCVSPKMGSELVVTRGDELKVVIPQDGQDFAAYEKLDFRHFLVQAMDGPL 180

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             ENT  A+++C ++P+WRLS+QTHK +GIR
Sbjct: 181 ARENTAAAVAFCQRHPRWRLSLQTHKLLGIR 211


>gi|323524432|ref|YP_004226585.1| Radical SAM domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323381434|gb|ADX53525.1| Radical SAM domain protein [Burkholderia sp. CCGE1001]
          Length = 210

 Score =  332 bits (853), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 121/210 (57%), Positives = 152/210 (72%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG+Y   ++L  +I  QW  GE + R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG
Sbjct: 61  GGKYRTPEELVQMIASQWPEGEGQ-RFVVCTGGEPMLQIDAPLVDALHAAGFEIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++   + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP 
Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSDYAKLDFEYFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDINTRLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|299134645|ref|ZP_07027837.1| Radical SAM domain protein [Afipia sp. 1NLS2]
 gi|298590455|gb|EFI50658.1| Radical SAM domain protein [Afipia sp. 1NLS2]
          Length = 210

 Score =  332 bits (852), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 135/209 (64%), Positives = 157/209 (75%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG  AGR AVFCRF+GCNLWSGREQDR  A C+FCDTDFVG  GT GG
Sbjct: 3   YAVKEIFLTLQGEGMQAGRPAVFCRFAGCNLWSGREQDRAEAVCQFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY   D LA+ I   W   +   R+ VLTGGEP+LQ+D  LI AL+ RGF IAVETNGT+
Sbjct: 63  RYATADDLAERIAATW-GPDSRHRFVVLTGGEPMLQIDDALIAALHARGFMIAVETNGTL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P G+DWICVSPKA  +L I+ G ELKLV+PQ   +PE+Y    F+ F LQPMDGP LE
Sbjct: 122 PAPPGLDWICVSPKADTELAIRQGHELKLVYPQRQNAPEDYTALAFQHFLLQPMDGPDLE 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT  AI YC ++P+WRLSVQTHK IGIR
Sbjct: 182 QNTARAIDYCLRHPQWRLSVQTHKTIGIR 210


>gi|167645047|ref|YP_001682710.1| hypothetical protein Caul_1082 [Caulobacter sp. K31]
 gi|167347477|gb|ABZ70212.1| conserved hypothetical protein [Caulobacter sp. K31]
          Length = 210

 Score =  332 bits (852), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 132/210 (62%), Positives = 153/210 (72%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS+KEIFLTLQGEGG AG+ AVFCRF+GCNLW+GREQDR  A C FCDTDFVG  G  
Sbjct: 1   MTYSVKEIFLTLQGEGGQAGKAAVFCRFAGCNLWTGREQDRRKAVCAFCDTDFVGTDGEG 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++   D L D +E  W TG    R  V TGGEPLLQ+D PLI A + RGF IAVETNG
Sbjct: 61  GGKFVTPDALVDAVEAAW-TGGPGDRLVVCTGGEPLLQLDAPLIAAFHARGFMIAVETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T+  P+GIDWICVSPKA   +    GQELKLV+PQ    PE +   DFERF LQPMDGP 
Sbjct: 120 TVAAPEGIDWICVSPKADAPVVQTRGQELKLVYPQDKALPERFAALDFERFYLQPMDGPD 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            E NT LA++YC  +P+WRLSVQTHK++G+
Sbjct: 180 RERNTQLAVAYCLSHPQWRLSVQTHKYLGL 209


>gi|161526284|ref|YP_001581296.1| organic radical activating enzyme-like protein [Burkholderia
           multivorans ATCC 17616]
 gi|189349002|ref|YP_001944630.1| hypothetical protein BMULJ_00116 [Burkholderia multivorans ATCC
           17616]
 gi|160343713|gb|ABX16799.1| organic radical activating enzyme-like protein [Burkholderia
           multivorans ATCC 17616]
 gi|189333024|dbj|BAG42094.1| conserved hypothetical protein [Burkholderia multivorans ATCC
           17616]
          Length = 210

 Score =  332 bits (852), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 119/210 (56%), Positives = 148/210 (70%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAQAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++ + D L   I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GF IA+ETNG
Sbjct: 61  GGKFKDADALVATIAGLWPAGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFGIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++   + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP 
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|107024049|ref|YP_622376.1| organic radical activating enzymes-like [Burkholderia cenocepacia
           AU 1054]
 gi|116691136|ref|YP_836759.1| organic radical activating enzymes-like protein [Burkholderia
           cenocepacia HI2424]
 gi|170734467|ref|YP_001766414.1| organic radical activating enzyme-like protein [Burkholderia
           cenocepacia MC0-3]
 gi|105894238|gb|ABF77403.1| organic radical activating enzymes-like protein [Burkholderia
           cenocepacia AU 1054]
 gi|116649225|gb|ABK09866.1| organic radical activating enzymes-like protein [Burkholderia
           cenocepacia HI2424]
 gi|169817709|gb|ACA92292.1| organic radical activating enzyme-like protein [Burkholderia
           cenocepacia MC0-3]
          Length = 210

 Score =  331 bits (851), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 119/210 (56%), Positives = 148/210 (70%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++ +   L   I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG
Sbjct: 61  GGKFKDAAALVATIAGLWPEGEA-NRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++   + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP 
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEYFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|78067938|ref|YP_370707.1| organic radical activating-like protein [Burkholderia sp. 383]
 gi|77968683|gb|ABB10063.1| Organic radical activating enzymes-like protein [Burkholderia sp.
           383]
          Length = 210

 Score =  331 bits (851), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 118/210 (56%), Positives = 149/210 (70%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++ + + L   I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG
Sbjct: 61  GGKFKDAEALVATIAGLWPEGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++   + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE + +QPMDGP 
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYYLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|206558876|ref|YP_002229636.1| hypothetical protein BCAL0474 [Burkholderia cenocepacia J2315]
 gi|198034913|emb|CAR50785.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
          Length = 210

 Score =  331 bits (851), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 119/210 (56%), Positives = 148/210 (70%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++ +   L   I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG
Sbjct: 61  GGKFKDAAALVATIAGLWPEGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++   + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP 
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEYFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|115353224|ref|YP_775063.1| organic radical activating enzyme-like protein [Burkholderia
           ambifaria AMMD]
 gi|170703437|ref|ZP_02894209.1| organic radical activating enzyme-like protein [Burkholderia
           ambifaria IOP40-10]
 gi|171319449|ref|ZP_02908554.1| organic radical activating enzyme-like protein [Burkholderia
           ambifaria MEX-5]
 gi|172062096|ref|YP_001809748.1| organic radical activating enzyme-like protein [Burkholderia
           ambifaria MC40-6]
 gi|115283212|gb|ABI88729.1| organic radical activating enzyme-like protein [Burkholderia
           ambifaria AMMD]
 gi|170131652|gb|EDT00208.1| organic radical activating enzyme-like protein [Burkholderia
           ambifaria IOP40-10]
 gi|171095341|gb|EDT40322.1| organic radical activating enzyme-like protein [Burkholderia
           ambifaria MEX-5]
 gi|171994613|gb|ACB65532.1| organic radical activating enzyme-like protein [Burkholderia
           ambifaria MC40-6]
          Length = 210

 Score =  331 bits (851), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 119/210 (56%), Positives = 149/210 (70%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++ + + L   I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG
Sbjct: 61  GGKFKDAEALVATIAGLWPDGEAH-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++   + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP 
Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|115522971|ref|YP_779882.1| hypothetical protein RPE_0946 [Rhodopseudomonas palustris BisA53]
 gi|115516918|gb|ABJ04902.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
          Length = 210

 Score =  331 bits (850), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 136/209 (65%), Positives = 156/209 (74%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG  GT GG
Sbjct: 3   YAVKEIFLTLQGEGAHAGRAAVFCRFTGCNLWSGREDDRAAATCQFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY +   LA+ I  QW  G+   RY VLTGGEPLLQVD  LI+AL+ RGF I VETNGT 
Sbjct: 63  RYLSASDLAEAIAAQWR-GDAASRYVVLTGGEPLLQVDDALIEALHDRGFSIGVETNGTQ 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
            PP+ IDW+CVSPKAG +L ++ G ELKLV+PQ    PE +    FERFSLQPMDGP   
Sbjct: 122 MPPEDIDWVCVSPKAGTELTLRYGDELKLVYPQEGAEPELFEALAFERFSLQPMDGPDAA 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            N   AI YC  +P+WRLSVQTHK +GIR
Sbjct: 182 ANIQAAIDYCLSHPQWRLSVQTHKTLGIR 210


>gi|113867905|ref|YP_726394.1| organic radical activating enzyme [Ralstonia eutropha H16]
 gi|113526681|emb|CAJ93026.1| organic radical activating enzyme [Ralstonia eutropha H16]
          Length = 211

 Score =  331 bits (849), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 122/211 (57%), Positives = 152/211 (72%), Gaps = 1/211 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR SA C+FCDTDFVG  GT+
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRAAVFCRFAGCNLWSGREEDRASAVCQFCDTDFVGTDGTR 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG+Y   ++LA ++  +W  G       V TGGEPLLQ+D PLI AL+ +GFEIA+ETNG
Sbjct: 61  GGKYRTAEELAAVVASEWPQGAGGQPLVVCTGGEPLLQLDAPLIDALHAQGFEIAIETNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           TI  P GIDW+CVSPK G +L +  G ELK+V PQ       Y   DF  F +Q MDGP 
Sbjct: 121 TIAVPPGIDWVCVSPKMGSELVVTRGDELKVVIPQEGQDFAAYEQLDFRHFLVQAMDGPL 180

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             ENT  A+++C ++P+WRLS+QTHK +GIR
Sbjct: 181 ARENTAAAVAFCQRHPRWRLSLQTHKLLGIR 211


>gi|307728151|ref|YP_003905375.1| Radical SAM domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307582686|gb|ADN56084.1| Radical SAM domain protein [Burkholderia sp. CCGE1003]
          Length = 210

 Score =  330 bits (848), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 120/210 (57%), Positives = 153/210 (72%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG+Y + ++L  +I  QW  GE + R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG
Sbjct: 61  GGKYRSAEELVRMIASQWPQGEGQ-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++   + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DF+ F +QPMDGP 
Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSDYAKLDFQYFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDINTRLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|300691566|ref|YP_003752561.1| hypothetical protein RPSI07_1920 [Ralstonia solanacearum PSI07]
 gi|299078626|emb|CBJ51283.1| conserved protein of unknown function (Organic radical activating
           enzymes) [Ralstonia solanacearum PSI07]
          Length = 212

 Score =  330 bits (848), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 123/212 (58%), Positives = 148/212 (69%), Gaps = 2/212 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG  GT+
Sbjct: 1   MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAICQFCDTDFVGTDGTQ 60

Query: 62  GGRY-NVDQLADLIEEQWIT-GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           GG+Y   D LAD +  QW           V TGGEPLLQ+D PLI AL+ RGFEIA+ETN
Sbjct: 61  GGKYPTADALADTVVAQWPADATGGQPLVVCTGGEPLLQLDRPLIDALHARGFEIAIETN 120

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GT+  P GIDW+CVSPK G +L +  G ELK+V PQ +   + Y   DF  F LQPMDGP
Sbjct: 121 GTLAVPDGIDWVCVSPKMGAELVVTRGDELKVVIPQQDQDLDAYERLDFRHFFLQPMDGP 180

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
              +NT LA+  C + P+W LS+QTHK +GIR
Sbjct: 181 LARQNTALAVDLCQRRPRWHLSLQTHKMLGIR 212


>gi|312797586|ref|YP_004030508.1| Queuosine biosynthesis protein QueE [Burkholderia rhizoxinica HKI
           454]
 gi|312169361|emb|CBW76364.1| Queuosine biosynthesis protein QueE [Burkholderia rhizoxinica HKI
           454]
          Length = 263

 Score =  330 bits (848), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 122/212 (57%), Positives = 147/212 (69%), Gaps = 3/212 (1%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGREQDR  A CRFCDTDFVG  G  
Sbjct: 51  MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREQDRADAVCRFCDTDFVGTDGEN 110

Query: 62  GGRY-NVDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
           GG+Y + D L   I   W  GE     R+ V TGGEP+LQ+D  LI AL++  F IAVET
Sbjct: 111 GGKYRDADALVAKIASLWPPGEAAAQYRFVVCTGGEPMLQLDAALIDALHRERFVIAVET 170

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
           NGT+    GIDW+CVSPKAG  + +  G ELK+V PQ N     Y   DFE F +QPMDG
Sbjct: 171 NGTLPVLPGIDWVCVSPKAGSSIVVTRGNELKVVIPQDNQPLSEYARLDFEHFLVQPMDG 230

Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P  E NT LA+ +C ++P+WRLS+QTHK++ I
Sbjct: 231 PSRELNTKLAVDWCKRHPQWRLSMQTHKYLNI 262


>gi|187922325|ref|YP_001893967.1| radical SAM protein [Burkholderia phytofirmans PsJN]
 gi|187713519|gb|ACD14743.1| Radical SAM domain protein [Burkholderia phytofirmans PsJN]
          Length = 210

 Score =  330 bits (847), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 122/210 (58%), Positives = 149/210 (70%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           G +Y   D L  +I  QW  GE E R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG
Sbjct: 61  GDKYRTADDLVKMIAAQWPEGEGE-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++   + IDWICVSPKA   L +  G ELK+V PQ N     Y   DFE F +QPMDGP 
Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSEYAKLDFEYFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDLNTRLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|170694006|ref|ZP_02885162.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
 gi|170141078|gb|EDT09250.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
          Length = 210

 Score =  330 bits (847), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 120/210 (57%), Positives = 150/210 (71%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRADAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG+Y     L  +I  QW  GE + R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG
Sbjct: 61  GGKYRTAADLVQMIASQWPEGEGQ-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++   + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DF+ F +QPMDGP 
Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSDYAKLDFDYFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDINTRLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|186474815|ref|YP_001856285.1| radical SAM domain-containing protein [Burkholderia phymatum
           STM815]
 gi|184191274|gb|ACC69239.1| Radical SAM domain protein [Burkholderia phymatum STM815]
          Length = 210

 Score =  330 bits (847), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 118/210 (56%), Positives = 151/210 (71%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A C+FCDTDFVG  G  
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRADAVCKFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++   ++LA  I   W  GE + R+ V TGGEP+LQ+D PL+ AL+ +GFEIA+ETNG
Sbjct: 61  GGKFRTPEELAAKIASLWPEGEDQ-RFVVCTGGEPMLQIDQPLVDALHAQGFEIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++     IDWICVSPKAG  L    G ELK+V PQ N    +Y   +F+ F +QPMDGP 
Sbjct: 120 SLPVLDTIDWICVSPKAGAPLVQTKGNELKVVVPQDNQRLADYAKLEFDYFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDINTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|134297293|ref|YP_001121028.1| organic radical activating enzyme-like protein [Burkholderia
           vietnamiensis G4]
 gi|134140450|gb|ABO56193.1| organic radical activating enzyme-like protein [Burkholderia
           vietnamiensis G4]
          Length = 210

 Score =  330 bits (847), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 119/210 (56%), Positives = 147/210 (70%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRADAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++ +   L   I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG
Sbjct: 61  GGKFKDAAALVATIAGLWPHGEAH-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++     IDWICVSPKA   L +  G ELK+V PQ N    +Y   DFE F +QPMDGP 
Sbjct: 120 SLPVLDTIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDINTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|330818676|ref|YP_004362381.1| hypothetical protein bgla_1g38230 [Burkholderia gladioli BSR3]
 gi|327371069|gb|AEA62425.1| hypothetical protein bgla_1g38230 [Burkholderia gladioli BSR3]
          Length = 210

 Score =  330 bits (847), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 118/210 (56%), Positives = 152/210 (72%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR +A CRFCDTDFVG  G  
Sbjct: 1   MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRETAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++   +QLA ++   W  GE   R+ V TGGEP+LQ+D PL+ AL+ +GFEIA+ETNG
Sbjct: 61  GGKFKTPEQLAAMVASLWPEGEA-NRFVVCTGGEPMLQLDQPLVDALHAQGFEIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++   + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DF+ F +QPMDGP 
Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGHELKVVVPQDNQRLADYARLDFDYFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDINTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|326405234|ref|YP_004285316.1| hypothetical protein ACMV_30870 [Acidiphilium multivorum AIU301]
 gi|325052096|dbj|BAJ82434.1| hypothetical protein ACMV_30870 [Acidiphilium multivorum AIU301]
          Length = 211

 Score =  330 bits (846), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 130/208 (62%), Positives = 152/208 (73%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG  G  GG
Sbjct: 3   YSVKEIFPTLQGEGRNAGRAAVFCRFAGCNLWSGREEDRASATCRFCDTDFVGTDGPGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+ +   LA  I+  W          V TGGEPLLQ+D PLI+A++  GFEIAVETNGTI
Sbjct: 63  RFADAAGLARAIQAAWPAACTRDALVVFTGGEPLLQLDAPLIEAVHDAGFEIAVETNGTI 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           EPP GIDW+CVSPK G +L ++ G ELKLV+PQ   +PE + G DF  F LQPMDGP   
Sbjct: 123 EPPPGIDWLCVSPKEGAELVVRQGSELKLVYPQKEATPERFAGLDFAHFLLQPMDGPDRA 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT  AI YC  +P+WRLS QTHK++GI
Sbjct: 183 ANTRAAIEYCLTHPQWRLSTQTHKYLGI 210


>gi|91781440|ref|YP_556646.1| hypothetical protein Bxe_A4406 [Burkholderia xenovorans LB400]
 gi|91685394|gb|ABE28594.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 210

 Score =  330 bits (846), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 123/210 (58%), Positives = 150/210 (71%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG+Y   + L  +I  QW  GE E R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG
Sbjct: 61  GGKYRTAEDLVRMIASQWPQGEGE-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++   + IDWICVSPKA   L +  G ELK+V PQ N     Y   DFE F +QPMDGP 
Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSEYAKLDFEYFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            E NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 REINTRLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|296161371|ref|ZP_06844178.1| Radical SAM domain protein [Burkholderia sp. Ch1-1]
 gi|295888357|gb|EFG68168.1| Radical SAM domain protein [Burkholderia sp. Ch1-1]
          Length = 210

 Score =  329 bits (845), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 122/210 (58%), Positives = 150/210 (71%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG+Y   + L  +I  QW  GE E R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG
Sbjct: 61  GGKYRTAEDLVRMIASQWPQGEGE-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++   + IDWICVSPKA   L +  G ELK+V PQ N     Y   DFE F +QPMDGP 
Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSEYAKLDFEYFLVQPMDGPS 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDINTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|209886114|ref|YP_002289971.1| radical SAM [Oligotropha carboxidovorans OM5]
 gi|209874310|gb|ACI94106.1| radical SAM [Oligotropha carboxidovorans OM5]
          Length = 210

 Score =  329 bits (845), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 139/209 (66%), Positives = 158/209 (75%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR AVFCRF+GCNLW+GREQDR  A CRFCDTDFVG  GT GG
Sbjct: 3   YAVKEIFLTLQGEGAHAGRTAVFCRFAGCNLWTGREQDRADATCRFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY   D LAD I   W  G    R+ VLTGGEPLLQ+DV LI+AL+ R F IAVETNGT+
Sbjct: 63  RYATADALADQIAATWGEGT-THRFVVLTGGEPLLQIDVELIEALHARHFMIAVETNGTL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P G+DWICVSPKA  +L I+ G ELKLV+PQ   +PE+Y    F  FSLQPMDGP L 
Sbjct: 122 PAPPGLDWICVSPKADTELAIRQGHELKLVYPQAENTPEDYAALAFAHFSLQPMDGPDLA 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT  AI YC ++P+WRLSVQTHK IGIR
Sbjct: 182 QNTERAIDYCLRHPQWRLSVQTHKTIGIR 210


>gi|73541537|ref|YP_296057.1| hypothetical protein Reut_A1848 [Ralstonia eutropha JMP134]
 gi|72118950|gb|AAZ61213.1| conserved hypothetical protein [Ralstonia eutropha JMP134]
          Length = 211

 Score =  329 bits (845), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 122/211 (57%), Positives = 155/211 (73%), Gaps = 1/211 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR +A C+FCDTDFVG  GT+
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRAAVFCRFAGCNLWSGREEDRATAVCQFCDTDFVGTDGTR 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG+Y   ++LA  +  +W  G       V TGGEPLLQ+D PLI AL+ +GFEIA+ETNG
Sbjct: 61  GGKYRTAEELAGAVASEWPQGAGGKPLVVCTGGEPLLQLDAPLIDALHAQGFEIAIETNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           TI+ P GIDW+CVSPK G +L ++ G ELK+V PQV      Y   DF+ F +Q MDGP 
Sbjct: 121 TIKVPPGIDWVCVSPKMGSELVVRKGDELKVVIPQVGQDFAAYEQLDFQYFLVQAMDGPL 180

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             ENT  A+++C ++P+WRLS+QTHK +GIR
Sbjct: 181 ARENTAAAVAFCQRHPRWRLSLQTHKLLGIR 211


>gi|302383449|ref|YP_003819272.1| hypothetical protein Bresu_2339 [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194077|gb|ADL01649.1| conserved hypothetical protein [Brevundimonas subvibrioides ATCC
           15264]
          Length = 211

 Score =  329 bits (844), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 128/211 (60%), Positives = 152/211 (72%), Gaps = 1/211 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS+KE FLT+QGEGG AGR AVF RF+GCNLWSGREQDR  A C FCDT+FVG  G  
Sbjct: 1   MTYSVKETFLTVQGEGGQAGRPAVFLRFAGCNLWSGREQDRAKAVCSFCDTEFVGTDGDG 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++ +   L+D +   WI  + + +  V TGGEPLLQ+D PLI+AL+ RGF+IAVETNG
Sbjct: 61  GGKFADAGVLSDHVASMWIGRDGDPKLVVCTGGEPLLQLDAPLIEALHARGFDIAVETNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T+  P GIDW+CVSPKA   +    GQELKLVFPQ    P  +   DFERF LQPMDGP 
Sbjct: 121 TLAAPTGIDWVCVSPKAAAPVVQTSGQELKLVFPQALAMPHRFEALDFERFWLQPMDGPD 180

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
              NT  A+ YC +NPKWRLSVQTHK+IG+R
Sbjct: 181 QAANTAAALDYCLKNPKWRLSVQTHKYIGVR 211


>gi|299067500|emb|CBJ38699.1| conserved protein of unknown function (Organic radical activating
           enzymes) [Ralstonia solanacearum CMR15]
          Length = 212

 Score =  328 bits (842), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 124/212 (58%), Positives = 147/212 (69%), Gaps = 2/212 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG  GT 
Sbjct: 1   MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAICQFCDTDFVGTDGTL 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           GG+Y   D LAD +  QW      GR   V TGGEPLLQ+D  LI AL+ RGFEIA+ETN
Sbjct: 61  GGKYPTADALADTVAAQWPVAATGGRPLVVCTGGEPLLQLDRLLIDALHARGFEIAIETN 120

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GT+  P GIDW+CVSPK G +L +  G ELK+V PQ     + Y   DF  F LQPMDGP
Sbjct: 121 GTLAVPDGIDWVCVSPKLGAELVVTRGDELKVVIPQPGQDLDAYERLDFRHFFLQPMDGP 180

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
              +NT LA+  C + P+W LS+QTHK +GIR
Sbjct: 181 LARQNTALAVELCQRRPRWHLSLQTHKMLGIR 212


>gi|197106204|ref|YP_002131581.1| hypothetical protein PHZ_c2743 [Phenylobacterium zucineum HLK1]
 gi|196479624|gb|ACG79152.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 241

 Score =  328 bits (842), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 130/207 (62%), Positives = 147/207 (71%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEGG AGR AVFCRF+GCNLWSGRE+DR  A C FCDTDFVG+ G  GG
Sbjct: 34  YAVKEIFLTLQGEGGQAGRPAVFCRFAGCNLWSGREEDREKAVCTFCDTDFVGMDGPGGG 93

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R+          E    G    R  VLTGGEPLLQVD  LI+AL+ RGF IA+ETNGT+ 
Sbjct: 94  RFADAAALAAAIEAQWAGGPNDRLVVLTGGEPLLQVDEALIEALHARGFSIALETNGTLP 153

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
            P GIDWICVSPKA   +    GQELKLVFPQ    PE +   DFERF LQPMDGP    
Sbjct: 154 VPPGIDWICVSPKADAPVVQTRGQELKLVFPQEKALPERFEHLDFERFLLQPMDGPDRAA 213

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
           NT  AI+YC  +P+WRLSVQTHK++GI
Sbjct: 214 NTRAAIAYCLAHPRWRLSVQTHKYLGI 240


>gi|94310513|ref|YP_583723.1| hypothetical protein Rmet_1571 [Cupriavidus metallidurans CH34]
 gi|93354365|gb|ABF08454.1| organic radical activating enzyme [Cupriavidus metallidurans CH34]
          Length = 211

 Score =  328 bits (841), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 124/211 (58%), Positives = 153/211 (72%), Gaps = 1/211 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRFSGCNLW+GRE+DR  A C+FCDTDFVG  GT 
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRAAVFCRFSGCNLWTGREEDRARAVCQFCDTDFVGTDGTL 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG+Y   D+LA ++  +W  G       V TGGEPLLQ+D PLI AL+ RGFEIA+ETNG
Sbjct: 61  GGKYKTADELAAVVAAEWPQGAGGKPLVVCTGGEPLLQLDAPLIGALHARGFEIAIETNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           TIE P+GIDW+CVSPK G +L +K G ELK+V PQ       Y   DF+ F +Q MDGP 
Sbjct: 121 TIEVPEGIDWVCVSPKMGSELVVKKGDELKVVIPQDGQDFAAYEQLDFQYFMVQAMDGPL 180

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             +NT  A+ +C ++P+WRLS+QTHK +GIR
Sbjct: 181 ARQNTAAAVEFCQRHPRWRLSLQTHKLLGIR 211


>gi|293605772|ref|ZP_06688146.1| GntS protein [Achromobacter piechaudii ATCC 43553]
 gi|292815821|gb|EFF74928.1| GntS protein [Achromobacter piechaudii ATCC 43553]
          Length = 210

 Score =  327 bits (839), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 126/210 (60%), Positives = 150/210 (71%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y+ KEIF TLQGEG HAGR AVFCRF+GCNLW+GRE DR SA C FCDTDF+G  G  
Sbjct: 1   MTYTAKEIFKTLQGEGAHAGRAAVFCRFAGCNLWTGRESDRASAACTFCDTDFIGTDGEG 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++   D LAD I   W   + + RY V TGGEPLLQ+D PL+ A++ RGF +A+ETNG
Sbjct: 61  GGKFATPDLLADTIAATW-GPDTQDRYVVFTGGEPLLQLDAPLLTAIHARGFTVAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T++ P GIDWICVSPK    + I  G ELKLV+PQ N  PE +   DFE F LQPMDGP 
Sbjct: 120 TVKAPAGIDWICVSPKGTAPIVIDRGDELKLVYPQHNALPETFAHLDFEHFFLQPMDGPA 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              NT  A+ YC Q+P+WRLS+QTHK+IGI
Sbjct: 180 RVANTEQAVQYCMQHPQWRLSLQTHKYIGI 209


>gi|187928417|ref|YP_001898904.1| hypothetical protein Rpic_1329 [Ralstonia pickettii 12J]
 gi|187725307|gb|ACD26472.1| conserved hypothetical protein [Ralstonia pickettii 12J]
          Length = 212

 Score =  327 bits (839), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 120/212 (56%), Positives = 148/212 (69%), Gaps = 2/212 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG  GT+
Sbjct: 1   MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAVCQFCDTDFVGTDGTQ 60

Query: 62  GGRYN-VDQLADLIEEQWIT-GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           GG+Y   + LAD +  +W           + TGGEPLLQ+D PLI AL+ RGFEIA+ETN
Sbjct: 61  GGKYTTAEALADTVAAEWPASATGGKPLVICTGGEPLLQLDKPLIDALHARGFEIAIETN 120

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GTI  P+GIDW+CVSPK G +L +  G ELK+V PQ     + Y   DF+ F LQ MDGP
Sbjct: 121 GTIAVPEGIDWVCVSPKMGSELVVTRGDELKVVIPQDGQDLDAYERLDFQHFFLQAMDGP 180

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
              +NT  A+  C + P+WRLS+QTHK +GIR
Sbjct: 181 LARQNTAAAVELCQRRPRWRLSLQTHKMLGIR 212


>gi|16127389|ref|NP_421953.1| hypothetical protein CC_3159 [Caulobacter crescentus CB15]
 gi|221236197|ref|YP_002518634.1| queuosine biosynthesis protein QueE [Caulobacter crescentus NA1000]
 gi|13424829|gb|AAK25121.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220965370|gb|ACL96726.1| queuosine biosynthesis protein QueE [Caulobacter crescentus NA1000]
          Length = 210

 Score =  326 bits (838), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 132/210 (62%), Positives = 153/210 (72%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS+KEIFLTLQGEGG AG+ AVFCRFSGCNLWSGREQDR  A C FCDTDFVG  G  
Sbjct: 1   MTYSVKEIFLTLQGEGGQAGKAAVFCRFSGCNLWSGREQDRAKAVCTFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++   + LA  +E QW TG  + R  V TGGEP LQ+D   I AL+ RGF+IAVETNG
Sbjct: 61  GGKFATAEDLAAAVEAQW-TGGPDDRLVVCTGGEPFLQLDDAAIAALHARGFQIAVETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           TI  P G+DWICVSPKA   +    GQELKLVFPQ    PE +   DFERF LQPMDGP 
Sbjct: 120 TITAPAGVDWICVSPKADAPVVQTSGQELKLVFPQEKAMPERFAALDFERFYLQPMDGPD 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + NT LA++YC  +P+WRLSVQTHK++G+
Sbjct: 180 RDANTQLAVAYCLSHPQWRLSVQTHKYLGL 209


>gi|241662994|ref|YP_002981354.1| hypothetical protein Rpic12D_1394 [Ralstonia pickettii 12D]
 gi|309782087|ref|ZP_07676817.1| GntS [Ralstonia sp. 5_7_47FAA]
 gi|240865021|gb|ACS62682.1| conserved hypothetical protein [Ralstonia pickettii 12D]
 gi|308919153|gb|EFP64820.1| GntS [Ralstonia sp. 5_7_47FAA]
          Length = 212

 Score =  326 bits (838), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 121/212 (57%), Positives = 148/212 (69%), Gaps = 2/212 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG  GT+
Sbjct: 1   MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAVCQFCDTDFVGTDGTQ 60

Query: 62  GGRYN-VDQLADLIEEQWIT-GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           GG+Y   D LAD +  +W           + TGGEPLLQ+D PLI AL+ RGFEIA+ETN
Sbjct: 61  GGKYTTADALADTVAAEWPASATGGKPLVICTGGEPLLQLDKPLIDALHARGFEIAIETN 120

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GTI  P+GIDW+CVSPK G +L +  G ELK+V PQ     + Y   DF+ F LQ MDGP
Sbjct: 121 GTITVPEGIDWVCVSPKMGSELVVTRGDELKVVIPQDGQDLDAYERLDFQHFFLQAMDGP 180

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
              +NT  A+  C + P+WRLS+QTHK +GIR
Sbjct: 181 LARQNTAAAVELCQRRPRWRLSLQTHKMLGIR 212


>gi|300704193|ref|YP_003745795.1| hypothetical protein RCFBP_11899 [Ralstonia solanacearum CFBP2957]
 gi|299071856|emb|CBJ43184.1| conserved protein of unknown function (Organic radical activating
           enzymes) [Ralstonia solanacearum CFBP2957]
          Length = 212

 Score =  326 bits (837), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 125/212 (58%), Positives = 148/212 (69%), Gaps = 2/212 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG  GT 
Sbjct: 1   MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRAAAVCQFCDTDFVGTDGTL 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           GG+Y   D LAD +  QW      GR   V TGGEPLLQ+D  LI AL+ RGFEIAVETN
Sbjct: 61  GGKYPTADALADTVAAQWPADATGGRPLVVCTGGEPLLQLDRCLIDALHARGFEIAVETN 120

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GT+  P+GIDW+CVSPK G +L +  G ELK+V PQ     + Y   DF  F LQPMDGP
Sbjct: 121 GTVAVPEGIDWVCVSPKMGAELVVTRGDELKVVIPQSGQDLDAYERLDFRHFFLQPMDGP 180

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
              +NT LA+  C + P+W LS+QTHK +GIR
Sbjct: 181 LARQNTALAVELCQRRPRWHLSLQTHKMLGIR 212


>gi|254418815|ref|ZP_05032539.1| hypothetical protein BBAL3_1125 [Brevundimonas sp. BAL3]
 gi|196184992|gb|EDX79968.1| hypothetical protein BBAL3_1125 [Brevundimonas sp. BAL3]
          Length = 211

 Score =  325 bits (835), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 130/211 (61%), Positives = 150/211 (71%), Gaps = 1/211 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS KE+FLT+QGEGG AGR AVF RF+GCNLWSGREQDR SA C FCDTDFVG  G  
Sbjct: 1   MTYSAKEVFLTVQGEGGQAGRPAVFLRFAGCNLWSGREQDRASAVCSFCDTDFVGTDGDG 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++   D LAD +   W     + +  V TGGEPLLQ+D PLI AL+ R FEIA+E+NG
Sbjct: 61  GGKFATADLLADHVAAMWRGRAGDPKLVVCTGGEPLLQLDPPLIAALHARDFEIAIESNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T+  P GIDWICVSPKA  DL    GQELKLV+PQ    P+ +    FERF LQPMDGP 
Sbjct: 121 TLAAPDGIDWICVSPKADADLIQVKGQELKLVYPQAKALPDRFEHLAFERFWLQPMDGPD 180

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             ENT  AI YC  +P+WRLSVQTHK+IG+R
Sbjct: 181 QAENTAAAIEYCLTHPQWRLSVQTHKYIGVR 211


>gi|300311525|ref|YP_003775617.1| organic radical activating enzyme protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074310|gb|ADJ63709.1| organic radical activating enzyme protein [Herbaspirillum
           seropedicae SmR1]
          Length = 229

 Score =  325 bits (833), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 122/209 (58%), Positives = 148/209 (70%), Gaps = 1/209 (0%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
            YSIKEIF TLQGEG HAGR AVFCRFSGCNLW+GRE+DR+ A C+FCDTDFVG  G  G
Sbjct: 20  TYSIKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGREEDRVRAICQFCDTDFVGTDGENG 79

Query: 63  GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           G++ +  +LA  I+  W       +Y V TGGEPLLQ+D  LI+A++  GFEIA+ETNGT
Sbjct: 80  GKFKSPAELAAKIDSLWPARYAPSKYVVFTGGEPLLQLDAALIEAMHAVGFEIAIETNGT 139

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           I+ P G+DWICVSPK G +LK++ G ELK+V PQ     + Y   DF+ F LQPMDG   
Sbjct: 140 IDVPDGVDWICVSPKMGSELKVRRGSELKVVVPQPGQPLDEYEKLDFQHFLLQPMDGLQA 199

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             NT LAI     NPKW+LS+QTHK + I
Sbjct: 200 AANTRLAIEMVKNNPKWKLSIQTHKLLNI 228


>gi|89901390|ref|YP_523861.1| organic radical activating-like protein [Rhodoferax ferrireducens
           T118]
 gi|89346127|gb|ABD70330.1| Organic radical activating enzymes-like [Rhodoferax ferrireducens
           T118]
          Length = 211

 Score =  325 bits (833), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 110/210 (52%), Positives = 145/210 (69%), Gaps = 1/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS+KEIF TLQGEG HAGR AVFCRF+GCNLWSG E  R SA C+FCDTDFVG  G  
Sbjct: 1   MTYSVKEIFYTLQGEGHHAGRPAVFCRFAGCNLWSGAEDSRASAVCQFCDTDFVGTDGEG 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++ + + LA  I + W       +Y V TGGEPLLQ++  LI A++  GFE+A+ETNG
Sbjct: 61  GGKFRDAETLAAAINQLWPASYPASKYVVFTGGEPLLQLNAALIDAMHDAGFEVAIETNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T+  P+G+DW+CVSPK G  L ++ G E+K+V PQ     ++Y    F+ + +Q MDGP 
Sbjct: 121 TLPVPEGVDWVCVSPKMGSALVVRAGNEIKVVIPQAGQVLDDYACLAFDHYFVQAMDGPL 180

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +EN  +AI YC  +P+W+LS+QTHK + I
Sbjct: 181 QKENLRMAIDYCKAHPQWKLSLQTHKLLQI 210


>gi|193222302|emb|CAL61551.2| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 211

 Score =  324 bits (831), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 123/210 (58%), Positives = 149/210 (70%), Gaps = 1/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YSIKEIF TLQGEG HAGR AVFCRFSGCNLW+GRE DR +A C+FCDTDFVG  G  
Sbjct: 1   MTYSIKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGRESDRATAVCQFCDTDFVGTDGEG 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++ +  +LA+ I   W       +Y V TGGEPLLQ+D  LI A++  GFEIA+ETNG
Sbjct: 61  GGKFADAVKLANTINALWPASYAASKYVVFTGGEPLLQLDTELINAMHAVGFEIAIETNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T+  P G+DWICVSPK G  L ++ G ELK+V PQ+  S   Y   DF+ F +QPMDGP 
Sbjct: 121 TLPVPAGVDWICVSPKMGSQLVVRKGSELKVVIPQLAQSLAAYEDLDFQHFFVQPMDGPL 180

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            E+NT LAI  C +NPKW+LS+QTHK + I
Sbjct: 181 AEQNTRLAIEICKKNPKWKLSLQTHKLLQI 210


>gi|134094603|ref|YP_001099678.1| hypothetical protein HEAR1379 [Herminiimonas arsenicoxydans]
          Length = 248

 Score =  324 bits (831), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 123/209 (58%), Positives = 149/209 (71%), Gaps = 1/209 (0%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
            YSIKEIF TLQGEG HAGR AVFCRFSGCNLW+GRE DR +A C+FCDTDFVG  G  G
Sbjct: 39  TYSIKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGRESDRATAVCQFCDTDFVGTDGEGG 98

Query: 63  GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           G++ +  +LA+ I   W       +Y V TGGEPLLQ+D  LI A++  GFEIA+ETNGT
Sbjct: 99  GKFADAVKLANTINALWPASYAASKYVVFTGGEPLLQLDTELINAMHAVGFEIAIETNGT 158

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           +  P G+DWICVSPK G  L ++ G ELK+V PQ+  S   Y   DF+ F +QPMDGP  
Sbjct: 159 LPVPAGVDWICVSPKMGSQLVVRKGSELKVVIPQLAQSLAAYEDLDFQHFFVQPMDGPLA 218

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E+NT LAI  C +NPKW+LS+QTHK + I
Sbjct: 219 EQNTRLAIEICKKNPKWKLSLQTHKLLQI 247


>gi|317404069|gb|EFV84524.1| hypothetical protein HMPREF0005_04153 [Achromobacter xylosoxidans
           C54]
          Length = 210

 Score =  323 bits (830), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 119/209 (56%), Positives = 145/209 (69%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y+ KEIF TLQGEG HAGR AVFCRF+GCNLW+GRE DR SA C FCDTDF+G  G  
Sbjct: 1   MTYTAKEIFKTLQGEGAHAGRAAVFCRFAGCNLWTGRESDRASAACTFCDTDFIGTDGDG 60

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           GG++   +L     E     +   RY V TGGEPLLQ+D  L+  ++ RGF +A+ETNGT
Sbjct: 61  GGKFASPELLADAIEAAWGPDTANRYIVFTGGEPLLQLDEALLAVVHARGFTVAIETNGT 120

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           ++PP GIDWICVSPK    + I+ G ELKLV+PQ N  P  +   DF+ F LQPMDGP  
Sbjct: 121 VQPPPGIDWICVSPKGTAPVVIERGNELKLVYPQANALPPRFEHLDFDHFFLQPMDGPAR 180

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             NT  A+ YC Q+P+WRLS+QTHK+IGI
Sbjct: 181 LANTEQAVQYCMQHPQWRLSLQTHKYIGI 209


>gi|295688231|ref|YP_003591924.1| radical SAM domain-containing protein [Caulobacter segnis ATCC
           21756]
 gi|295430134|gb|ADG09306.1| Radical SAM domain protein [Caulobacter segnis ATCC 21756]
          Length = 210

 Score =  323 bits (830), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 131/210 (62%), Positives = 153/210 (72%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS+KEIFLTLQGEGG AG+ AVFCRFSGCNLWSGREQDR  A C FCDTDFVG  G  
Sbjct: 1   MTYSVKEIFLTLQGEGGQAGKAAVFCRFSGCNLWSGREQDRAKAVCTFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++   D LA  +E QW TG  + R  V TGGEP LQ+D   I AL+ RGF+IAVE+NG
Sbjct: 61  GGKFATADDLAAAVEAQW-TGGPDDRLVVCTGGEPFLQLDEAAIAALHARGFQIAVESNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           TI+ P  IDWIC+SPKA   +    GQELKLVFPQ    PE +   DFERF LQPMDGP 
Sbjct: 120 TIQAPPEIDWICISPKADAPVVQTSGQELKLVFPQEKAMPERFADLDFERFYLQPMDGPD 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + NT LA++YC  +P+WRLSVQTHK++G+
Sbjct: 180 RDRNTQLAVAYCLSHPQWRLSVQTHKYLGL 209


>gi|284028807|ref|YP_003378738.1| hypothetical protein Kfla_0827 [Kribbella flavida DSM 17836]
 gi|283808100|gb|ADB29939.1| conserved hypothetical protein [Kribbella flavida DSM 17836]
          Length = 211

 Score =  323 bits (830), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 116/208 (55%), Positives = 149/208 (71%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +KEIF TLQGEG HAGR AVFCRF+ CNLW+GRE+DR  A C FCDTDFVG  G  GG
Sbjct: 3   YKVKEIFYTLQGEGSHAGRPAVFCRFASCNLWTGREKDRARAICSFCDTDFVGTDGPGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ + + LA  +E+ W     + R  V TGGEPLLQ+D   + AL++RGF +AVETNGT 
Sbjct: 63  KFASAEDLARAVEDAWPHDGHDQRMVVCTGGEPLLQLDADAVSALHERGFYVAVETNGTQ 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
            PPQG+DW+CVSPK G +L +  G ELKLV+PQ    P  +   +FE F LQPMD P  +
Sbjct: 123 IPPQGLDWLCVSPKIGAELIVTSGDELKLVYPQAGGDPAQFEHLEFEHFRLQPMDSPDRQ 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +NT  A+ YC ++P+W+LS+QTHK++GI
Sbjct: 183 QNTAAAVEYCLKHPRWQLSLQTHKYLGI 210


>gi|302558410|ref|ZP_07310752.1| GntS family protein [Streptomyces griseoflavus Tu4000]
 gi|302476028|gb|EFL39121.1| GntS family protein [Streptomyces griseoflavus Tu4000]
          Length = 213

 Score =  323 bits (829), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 121/213 (56%), Positives = 149/213 (69%), Gaps = 2/213 (0%)

Query: 1   MKL-YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M + Y IKEIF TLQGEG HAGR AVFCRFS CNLW+GRE DR  A C+FCDTDFVG  G
Sbjct: 1   MNMTYLIKEIFYTLQGEGSHAGRPAVFCRFSRCNLWTGREADRSRAICQFCDTDFVGTDG 60

Query: 60  TKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
             GGR+   + LAD +E  W + ++  R+ V TGGEPLLQ+D   I AL+ RGFE+AVET
Sbjct: 61  EGGGRFRTAEDLADAVEAAWPSTDRAHRFVVCTGGEPLLQLDEDAIAALHARGFEVAVET 120

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
           NGT   P GIDW+CVSPK G  L +  G ELKLV+PQ    P  + G DF+   LQP+D 
Sbjct: 121 NGTRPAPHGIDWLCVSPKIGSQLVLTSGDELKLVYPQAGGDPAQFEGLDFQHLRLQPLDD 180

Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
              E++T  A+ YC +NP+W LS+QTHK++GI+
Sbjct: 181 ANREDHTRAAVEYCMKNPRWTLSLQTHKYLGIQ 213


>gi|182679140|ref|YP_001833286.1| radical SAM domain-containing protein [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635023|gb|ACB95797.1| Radical SAM domain protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 211

 Score =  323 bits (828), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 133/211 (63%), Positives = 151/211 (71%), Gaps = 2/211 (0%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y++KEIFLTLQGEG  AGR AVFCRF+GCNLWSGRE DR  A CRFCDTDFVG+ G 
Sbjct: 1   MSHYAVKEIFLTLQGEGAQAGRPAVFCRFTGCNLWSGREADRAQAICRFCDTDFVGMDGL 60

Query: 61  KGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
            GGR+ +   LAD IE  W  G    RY V TGGEPLLQ+D  LI+ ++ RGF IAVETN
Sbjct: 61  GGGRFESASSLADAIETAWTAG-PAHRYVVFTGGEPLLQLDETLIKEIHARGFTIAVETN 119

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GTI PP G+DWICVSPKAG  LKI  G ELKLVFPQ  + PE +    F+ F LQPMD  
Sbjct: 120 GTIAPPPGLDWICVSPKAGAPLKITQGSELKLVFPQEALDPEEFRALSFQHFWLQPMDNA 179

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            L  NT  A +YC  +P+WRLS+QTHK IGI
Sbjct: 180 NLARNTTEATAYCLAHPQWRLSLQTHKLIGI 210


>gi|91787388|ref|YP_548340.1| hypothetical protein Bpro_1494 [Polaromonas sp. JS666]
 gi|91696613|gb|ABE43442.1| conserved hypothetical protein [Polaromonas sp. JS666]
          Length = 211

 Score =  322 bits (827), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 127/209 (60%), Positives = 146/209 (69%), Gaps = 1/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +KEIF TLQGEG +AGR AVFCRF+GCNLWSGREQDR +A C+FCDTDFVG  GT GG
Sbjct: 3   YQVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREQDRATAVCQFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ + D LA LIE QW   ++  R  V+TGGEPLLQVDV LI AL+ RGF+IAVETNGTI
Sbjct: 63  KFADADALARLIEAQWPADDRAHRLVVMTGGEPLLQVDVALIAALHARGFQIAVETNGTI 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDWICVSPKAG     + GQELK+V+PQ            F    LQPMD     
Sbjct: 123 AAPAGIDWICVSPKAGAPWIQREGQELKVVWPQAGFELAELEAARFTHRFLQPMDNARRA 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT   I+ C Q P WRLS+QTHK  GIR
Sbjct: 183 DNTQACIALCMQRPAWRLSLQTHKITGIR 211


>gi|330994295|ref|ZP_08318223.1| 7-carboxy-7-deazaguanine synthase-like protein [Gluconacetobacter
           sp. SXCC-1]
 gi|329758762|gb|EGG75278.1| 7-carboxy-7-deazaguanine synthase-like protein [Gluconacetobacter
           sp. SXCC-1]
          Length = 211

 Score =  322 bits (827), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 124/208 (59%), Positives = 147/208 (70%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG HAGR AVFCRF+GCNLWSG E+DR  A CRFCDTDF+G  G  GG
Sbjct: 3   YTVKEIFPTLQGEGAHAGRTAVFCRFTGCNLWSGLERDRARATCRFCDTDFIGTDGAGGG 62

Query: 64  RYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+    L AD I   W   +++  + V TGGEPLLQ+D  LI A++ RGFEIAVETNGT+
Sbjct: 63  RFASASLLADAIAAHWPAPDRKAAFVVFTGGEPLLQLDDALITAVHARGFEIAVETNGTL 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDWICVSPKAG  L    G ELKLV+PQ ++ P    G DF +F LQPMD    +
Sbjct: 123 RAPGGIDWICVSPKAGAPLVQTSGHELKLVYPQPDLLPGQVAGLDFSQFWLQPMDNAARD 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT  A+ YC  +P+WRLS+QTHK IGI
Sbjct: 183 HNTRAAVDYCLHHPQWRLSLQTHKLIGI 210


>gi|288942462|ref|YP_003444702.1| radical SAM domain-containing protein [Allochromatium vinosum DSM
           180]
 gi|288897834|gb|ADC63670.1| radical SAM domain-containing protein [Allochromatium vinosum DSM
           180]
          Length = 215

 Score =  322 bits (827), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 127/212 (59%), Positives = 146/212 (68%), Gaps = 5/212 (2%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +KE F TLQGEG  AGR AVFCRFSGCNLWSGREQDR  A CRFCDTDF G  G  GG
Sbjct: 3   YWVKESFYTLQGEGAQAGRAAVFCRFSGCNLWSGREQDRDRAICRFCDTDFRGTDGEGGG 62

Query: 64  RY-NVDQLADLIEEQWITGE----KEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
           RY + D LA+ +   W TG      +  Y V TGGEPLLQ+D PLI AL+  GFE+AVET
Sbjct: 63  RYRDADVLAEHLRALWPTGAGADASDRPYVVCTGGEPLLQLDAPLIDALHGSGFEVAVET 122

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
           NGT   P G+DWICVSPKAG    +  G ELKL++PQ  + PE + G  F  F LQPMDG
Sbjct: 123 NGTRPAPPGLDWICVSPKAGATTVLIEGDELKLIYPQPGLEPERFEGLGFRHFFLQPMDG 182

Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P    NT LA+ YC   P+WRLS+QTHK++GI
Sbjct: 183 PQSNANTRLAVDYCKARPRWRLSLQTHKWLGI 214


>gi|167585085|ref|ZP_02377473.1| organic radical activating enzyme-like protein [Burkholderia
           ubonensis Bu]
          Length = 210

 Score =  322 bits (826), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 113/209 (54%), Positives = 143/209 (68%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAQALCRFCDTDFVGTDGEN 60

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           GG++                 +  R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG+
Sbjct: 61  GGKFKDAAALAAQVASLWPDGEAHRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGS 120

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           +   + IDWICVSPKA   L +  G ELK+V PQ N    +Y   DF+ F +QPMDGP  
Sbjct: 121 LPVLESIDWICVSPKADVPLVVTKGNELKVVIPQDNQRLADYAKLDFDYFLVQPMDGPSR 180

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           + NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 181 DLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209


>gi|158422696|ref|YP_001523988.1| hypothetical protein AZC_1072 [Azorhizobium caulinodans ORS 571]
 gi|158329585|dbj|BAF87070.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 212

 Score =  322 bits (826), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 128/209 (61%), Positives = 150/209 (71%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG  AGR AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG+ G  GG
Sbjct: 3   YAVKEIFKTLQGEGAQAGRAAVFCRFAGCNLWSGREEDRASAICRFCDTDFVGMDGEGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           R+ +   LA  I   W      GR Y V TGGEPLLQ+D  LI+A++  GFEIA+ETNGT
Sbjct: 63  RFADAPSLAATIARTWGEKGAGGRPYVVFTGGEPLLQLDAALIEAVHAEGFEIAIETNGT 122

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           +  P GIDWICVSPKAG ++  + G ELKLV+PQ  V PE   G  FE + LQPMDGP  
Sbjct: 123 LPAPAGIDWICVSPKAGAEIVQRTGSELKLVYPQPEVPPEAVAGLTFEHYFLQPMDGPAR 182

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            ENT   I+YC  +P+WRLS+QTHK  GI
Sbjct: 183 IENTQAVIAYCLAHPQWRLSLQTHKITGI 211


>gi|124265719|ref|YP_001019723.1| hypothetical protein Mpe_A0526 [Methylibium petroleiphilum PM1]
 gi|124258494|gb|ABM93488.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 211

 Score =  322 bits (826), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 123/211 (58%), Positives = 152/211 (72%), Gaps = 1/211 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS+KE+F TLQGEG HAGR AVFCRF+GCNLWSGRE DR  A CRFCDT+FVG  GT 
Sbjct: 1   MTYSVKEVFYTLQGEGSHAGRPAVFCRFAGCNLWSGREADRADAVCRFCDTEFVGTDGTG 60

Query: 62  GGRYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++ + + LA  +   W  G+   R+ VLTGGEPLLQVD PLI AL+ + FEIAVETNG
Sbjct: 61  GGKFTIAESLASHVAAHWPAGDAGPRFVVLTGGEPLLQVDAPLIDALHAQRFEIAVETNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           ++  P GIDW+CVSPKAG  L  + GQELK+V PQ  +      G DF +  +QPMDGP 
Sbjct: 121 SVPAPPGIDWLCVSPKAGAPLLQRSGQELKVVVPQGGIDLGELDGLDFAQRRVQPMDGPD 180

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           L  NT+ A+ +C  +P+W+LS+QTHK +GIR
Sbjct: 181 LAANTDWAVRWCLAHPRWQLSLQTHKLLGIR 211


>gi|237748637|ref|ZP_04579117.1| organic radical activating enzyme [Oxalobacter formigenes OXCC13]
 gi|229379999|gb|EEO30090.1| organic radical activating enzyme [Oxalobacter formigenes OXCC13]
          Length = 219

 Score =  321 bits (825), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 122/209 (58%), Positives = 146/209 (69%), Gaps = 1/209 (0%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
            YS+KEIF TLQGEG  +GR AVFCRFSGCNLWSGRE DR  + CRFCDTDFVG  G  G
Sbjct: 10  TYSVKEIFYTLQGEGARSGRPAVFCRFSGCNLWSGREADRSRSVCRFCDTDFVGTDGVNG 69

Query: 63  GRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           G++   + L+  IE  W  G  E RY V TGGEPLLQ+D  LI A++ +GFEIA+ETNGT
Sbjct: 70  GKFAQAEDLSSFIESLWPAGFMENRYVVFTGGEPLLQLDAALIDAMHGKGFEIAIETNGT 129

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           +  P GIDW+CVSPKAG DL + GG ELK+V PQ      +Y    F  F +QPMDG   
Sbjct: 130 LAVPDGIDWVCVSPKAGADLAVAGGDELKVVVPQPGQILADYESLAFTHFYVQPMDGENR 189

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +N  +AI  C QNPKW+LS+QTHK++ I
Sbjct: 190 LQNVKIAIDTCLQNPKWKLSLQTHKYLQI 218


>gi|152981565|ref|YP_001353700.1| organic radical activating enzyme [Janthinobacterium sp. Marseille]
 gi|151281642|gb|ABR90052.1| organic radical activating enzyme [Janthinobacterium sp. Marseille]
          Length = 211

 Score =  321 bits (824), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 122/210 (58%), Positives = 146/210 (69%), Gaps = 1/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS+KEIF TLQGEG HAGR AVFCRFSGCNLW+GRE DR +A C+FCDTDFVG  G  
Sbjct: 1   MTYSVKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGRESDRATAVCQFCDTDFVGTNGEG 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++ +   LA  I   W       +Y V TGGEPLLQ+D  LI A++  GFEIA+ETNG
Sbjct: 61  GGKFVDGSTLAHTINALWPESYAASKYVVFTGGEPLLQLDTELIDAMHAVGFEIAIETNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T+  P G+DWICVSPK G  L ++ G ELK+V PQ   S   Y   +FE F +QPMDGP 
Sbjct: 121 TLPVPAGVDWICVSPKMGSQLVVRKGSELKVVIPQAEQSLAAYEALEFEHFFVQPMDGPL 180

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            E+NT LAI  C +NPKW+LS+QTHK + I
Sbjct: 181 AEQNTKLAIDVCKRNPKWKLSLQTHKLLQI 210


>gi|86742064|ref|YP_482464.1| hypothetical protein Francci3_3380 [Frankia sp. CcI3]
 gi|86568926|gb|ABD12735.1| conserved hypothetical protein [Frankia sp. CcI3]
          Length = 212

 Score =  321 bits (823), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 122/210 (58%), Positives = 146/210 (69%), Gaps = 2/210 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y IKEIF TLQGEG  +GR AVFCRF+ CNLW+GRE+DR  A C+FCDTDFVG  G  GG
Sbjct: 3   YRIKEIFYTLQGEGVRSGRPAVFCRFALCNLWTGRERDRHRAVCQFCDTDFVGTDGPDGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEG-RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
            +   D LAD +  +W +       Y V TGGEPLLQ+D P + AL+ RGFE+AVETNGT
Sbjct: 63  VFDTPDDLADAVAARWPSDAPGALPYVVCTGGEPLLQLDTPAVSALHTRGFEVAVETNGT 122

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
              P G+DW+CVSPKAG  L++  G ELKLVFPQ    PE + G +F    LQPMDGP  
Sbjct: 123 CPAPAGLDWVCVSPKAGAPLRLTTGDELKLVFPQPGAGPELFAGLEFGHHLLQPMDGPHR 182

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           E NT  A+ YC  +P+WRLS+QTHK +GIR
Sbjct: 183 EANTRAALDYCLAHPRWRLSIQTHKILGIR 212


>gi|224824585|ref|ZP_03697692.1| conserved hypothetical protein [Lutiella nitroferrum 2002]
 gi|224603078|gb|EEG09254.1| conserved hypothetical protein [Lutiella nitroferrum 2002]
          Length = 209

 Score =  321 bits (823), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 124/209 (59%), Positives = 146/209 (69%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y++KEIF TLQGEG  AGR AVFCRF+GCNLWSG+E+ R  A C+FCDTDFVG     G
Sbjct: 1   MYTVKEIFYTLQGEGRQAGRAAVFCRFAGCNLWSGKERHRAKAICQFCDTDFVGTGPDGG 60

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                +QLA+ I   W  G     + V TGGEPLLQ+D PLI AL+ RGFEIAVETNGT+
Sbjct: 61  KFKTAEQLAERIAGAWPAGAGGTPFVVCTGGEPLLQLDAPLIDALHARGFEIAVETNGTV 120

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDW+CVSPKAG  L    G ELKLV+PQ  + PE+  G  F+ F LQPMDGP + 
Sbjct: 121 AAPPGIDWLCVSPKAGAPLLQTSGHELKLVYPQPTLMPESVAGLAFQNFYLQPMDGPDVA 180

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT  AI+YC   P+WRLSVQTHK + IR
Sbjct: 181 ANTRAAIAYCMAQPQWRLSVQTHKVLNIR 209


>gi|220926506|ref|YP_002501808.1| radical SAM domain-containing protein [Methylobacterium nodulans
           ORS 2060]
 gi|219951113|gb|ACL61505.1| radical SAM domain-containing protein [Methylobacterium nodulans
           ORS 2060]
          Length = 210

 Score =  320 bits (822), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 124/207 (59%), Positives = 149/207 (71%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG  AGR AVFCRF+GCNLWSGRE DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEIFHTLQGEGAQAGRAAVFCRFAGCNLWSGREADRADAICRFCDTDFVGTDGEGGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R+   +           G ++GRY V TGGEPLLQ+D PL+ A++ RGF  AVETNGT +
Sbjct: 63  RFADAEALAAAIAAAWGGGRDGRYVVFTGGEPLLQLDAPLLAAVHARGFATAVETNGTQD 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
            P+G+DWICVSPKAG  L+I  G ELKLV+PQ  + PE+ +G DF  F LQPMDGP    
Sbjct: 123 APEGLDWICVSPKAGAPLRITRGDELKLVYPQAGLRPEDLVGLDFRHFWLQPMDGPDRLA 182

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
           NT  A++YC ++ +WRLS+QTHK IGI
Sbjct: 183 NTEAAVAYCLRDARWRLSLQTHKLIGI 209


>gi|146339025|ref|YP_001204073.1| hypothetical protein BRADO1974 [Bradyrhizobium sp. ORS278]
 gi|146191831|emb|CAL75836.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
          Length = 210

 Score =  320 bits (822), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 131/208 (62%), Positives = 152/208 (73%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF+TLQGEG  AGR AVFCRF+GCNLWSGRE DR +A CRFCDTDFVG+ GT GG
Sbjct: 3   YAVKEIFMTLQGEGAQAGRAAVFCRFAGCNLWSGREADRATATCRFCDTDFVGVDGTLGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           RY              TG    RY +LTGGEPLLQVD  LI AL+ +GF + +ETNGT+ 
Sbjct: 63  RYETAAALAEAIAGQWTGGAADRYTILTGGEPLLQVDADLIAALHAQGFAVGIETNGTLI 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
           PP GIDWICVSPKAG +LK++ G ELKLV+PQ    P+ + G  FERFSLQPMDGP    
Sbjct: 123 PPDGIDWICVSPKAGAELKLRHGHELKLVYPQAGTEPDKFEGLAFERFSLQPMDGPDAAA 182

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           NT  AI YC + P+WRLS+QTHK IGIR
Sbjct: 183 NTARAIHYCQRRPQWRLSLQTHKMIGIR 210


>gi|85813929|emb|CAF31558.1| putative fortimicin production protein [Micromonospora
           olivasterospora]
          Length = 212

 Score =  320 bits (822), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 119/211 (56%), Positives = 143/211 (67%), Gaps = 3/211 (1%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y +KEIF TLQGEG HAGR AVFCRF+ CNLW+GRE++R  A C+FCDTDFVG  G  G
Sbjct: 1   MYRVKEIFYTLQGEGSHAGRPAVFCRFTSCNLWTGREEERHRAICQFCDTDFVGTDGPGG 60

Query: 63  GRYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           GR+               GE   R   Y V TGGEPLLQ+D   ++AL+  GFE+AVETN
Sbjct: 61  GRFATAAELAAAVVAAWRGEDHPRSRPYVVCTGGEPLLQLDEAAVRALHDAGFEVAVETN 120

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GT   P GIDW+CVSPKAG DL +  G +LKLV+PQ    P  + G DF  F LQPMDGP
Sbjct: 121 GTRPAPPGIDWVCVSPKAGADLVLTRGDDLKLVYPQPGAEPARFEGLDFAHFMLQPMDGP 180

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               NT  A+ YC ++P+WRLS+QTHK+IGI
Sbjct: 181 DRVANTEAAVRYCLEHPQWRLSLQTHKYIGI 211


>gi|300023287|ref|YP_003755898.1| radical SAM protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525108|gb|ADJ23577.1| Radical SAM domain protein [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 208

 Score =  320 bits (821), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 121/209 (57%), Positives = 143/209 (68%), Gaps = 3/209 (1%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR  A C+FCDTDFVG  G  G
Sbjct: 1   MYAVKEIFYTLQGEGTNAGRPAVFCRFAGCNLWTGREVDRAKAVCQFCDTDFVGTDGEGG 60

Query: 63  GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           GR+   D LA         G       VLTGGEP+LQVD  L+ AL+ RGF IA+ETNGT
Sbjct: 61  GRFRTADDLARACRAAC--GSDGDMLVVLTGGEPMLQVDQELVDALHARGFTIAIETNGT 118

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           +   + IDWICVSPKAG  L+ K G ELKLV+PQ  V P +Y    F+   LQPMDG   
Sbjct: 119 LPVLETIDWICVSPKAGSQLQQKHGHELKLVYPQEGVDPADYADLAFQTRFLQPMDGATR 178

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E NT  A++YC  NP WRLS+QTHK +GI
Sbjct: 179 EANTQAAVAYCKANPGWRLSLQTHKLLGI 207


>gi|329902674|ref|ZP_08273228.1| Queuosine Biosynthesis QueE Radical SAM [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548646|gb|EGF33296.1| Queuosine Biosynthesis QueE Radical SAM [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 207

 Score =  320 bits (821), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 114/205 (55%), Positives = 141/205 (68%), Gaps = 1/205 (0%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY- 65
           KEIF TLQGEG HAGR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG  G  GG++ 
Sbjct: 2   KEIFYTLQGEGTHAGRPAVFCRFAGCNLWSGRESDRATAVCQFCDTDFVGTDGVMGGKFA 61

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
           + + LA  +   W       ++ V+TGGEP+LQ+D+ LI AL+ +GF IA+ETNGT+  P
Sbjct: 62  DAESLAATVNSLWPADYPASKFIVITGGEPMLQLDLALIDALHAQGFMIAIETNGTLPVP 121

Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185
             +DWICVSPK G  L  + G ELK+V PQ+      Y   DFE F LQPMD P    NT
Sbjct: 122 PEVDWICVSPKMGSKLVQRSGNELKVVIPQLGQDLLMYEALDFEHFYLQPMDSPTAARNT 181

Query: 186 NLAISYCFQNPKWRLSVQTHKFIGI 210
             AI +C ++PKW+LSVQTHK + I
Sbjct: 182 ERAIDHCKRHPKWKLSVQTHKILQI 206


>gi|260223401|emb|CBA33932.1| hypothetical protein Csp_B21500 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 225

 Score =  320 bits (821), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 126/209 (60%), Positives = 148/209 (70%), Gaps = 1/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +KEIF TLQGEG HAGR AVFCRF+GCNLWSGREQDR +A C+FCDTDFVG  GT GG
Sbjct: 17  YQVKEIFYTLQGEGSHAGRPAVFCRFAGCNLWSGREQDRATAVCKFCDTDFVGTDGTLGG 76

Query: 64  RYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +++  Q LA+ I  QW  G+   R+ V+TGGEPLLQVD  LI AL+  GF+IAVETNGT+
Sbjct: 77  KFSTAQALAERIAAQWPAGDTAHRFVVMTGGEPLLQVDTALIDALHALGFQIAVETNGTV 136

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+GIDWICVSPKAG     + G ELKLV+PQ  ++ E     DF+   LQPMD P   
Sbjct: 137 LVPEGIDWICVSPKAGSQWIQRQGHELKLVWPQAGITLEECEAADFKHRYLQPMDSPQRA 196

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            N    I+ C Q P WRLS+QTHK  GIR
Sbjct: 197 ANIETCITQCMQRPAWRLSLQTHKITGIR 225


>gi|103488122|ref|YP_617683.1| hypothetical protein Sala_2645 [Sphingopyxis alaskensis RB2256]
 gi|98978199|gb|ABF54350.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256]
          Length = 210

 Score =  320 bits (820), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 130/209 (62%), Positives = 154/209 (73%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG   GR AVFCRF+GCNLWSGRE DR ++ C FCDTDFVG+ G+ GG
Sbjct: 3   YAVKEIFKTLQGEGAQMGRAAVFCRFAGCNLWSGREGDRTTSVCTFCDTDFVGMDGSGGG 62

Query: 64  RYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+  DQ LAD IE +W  G +  RY VLTGGEPLLQVD  L+ AL+ RGFEIA+ETNGT 
Sbjct: 63  RFADDQALADAIESEW-AGARADRYVVLTGGEPLLQVDQDLVDALHTRGFEIAIETNGTQ 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+G+DWICVSPKA  +L +  G ELKLV+PQ   +PE +    FE F LQPMD P   
Sbjct: 122 PAPRGLDWICVSPKADAELVLLAGNELKLVYPQEKAAPERFEHLAFEHFFLQPMDSPTAA 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            N   AI+YC QNP+WRLS+Q+HK IGIR
Sbjct: 182 ANLEAAITYCTQNPRWRLSLQSHKMIGIR 210


>gi|187478511|ref|YP_786535.1| hypothetical protein BAV2019 [Bordetella avium 197N]
 gi|115423097|emb|CAJ49628.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 210

 Score =  320 bits (820), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 126/210 (60%), Positives = 147/210 (70%), Gaps = 2/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS KEIF TLQGEG  AGR AVFCRFSGCNLWSGRE DR +A C FCDTDFVG  G  
Sbjct: 1   MTYSAKEIFKTLQGEGAQAGRAAVFCRFSGCNLWSGRESDRAAAACTFCDTDFVGSDGEG 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++ +   LAD I   W   ++ GRY V TGGEPLLQ+D  LI A++ +GF IA+ETNG
Sbjct: 61  GGKFRDAQALADTIARTW-GPDRAGRYVVFTGGEPLLQLDEALIDAVHAQGFTIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T+  P G+DWICVSPK    +    GQELKLVFPQV   PE + G DFE F LQP+D P 
Sbjct: 120 TLPVPAGVDWICVSPKGRAPVVQTRGQELKLVFPQVEAPPEAFAGLDFEHFFLQPLDSPL 179

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              +T  A+ YC  +P+WRLSVQTHK+IGI
Sbjct: 180 RRAHTEAAVQYCMAHPQWRLSVQTHKYIGI 209


>gi|83859604|ref|ZP_00953124.1| hypothetical protein OA2633_06384 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851963|gb|EAP89817.1| hypothetical protein OA2633_06384 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 209

 Score =  319 bits (819), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 122/210 (58%), Positives = 151/210 (71%), Gaps = 3/210 (1%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS+KE+FLT+QGEGG  GR AVF RF+GCNLWSG E+DR SA C+FCDTDFVG+ G  
Sbjct: 1   MTYSVKEMFLTVQGEGGQTGRPAVFLRFAGCNLWSGLERDRASAICQFCDTDFVGVDGVN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++   + LAD +   W  G +   Y V TGGEPLLQ+D PLI AL++ GF IAVETNG
Sbjct: 61  GGKFKTAEALADKVASLWPGGGEP--YVVCTGGEPLLQLDAPLIDALHEAGFRIAVETNG 118

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           TI+ P+GIDW+CVSPK+   LK   G ELKLV+PQ    PE + G DF++F LQPMDGP 
Sbjct: 119 TIKAPEGIDWVCVSPKSTAPLKQTSGDELKLVYPQPEAMPELFSGLDFKQFRLQPMDGPD 178

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             +N   A  YC Q+P+W LS+QTHK+I +
Sbjct: 179 QMKNAQAAFEYCLQHPQWMLSLQTHKWINV 208


>gi|148253795|ref|YP_001238380.1| hypothetical protein BBta_2298 [Bradyrhizobium sp. BTAi1]
 gi|146405968|gb|ABQ34474.1| hypothetical protein BBta_2298 [Bradyrhizobium sp. BTAi1]
          Length = 210

 Score =  319 bits (818), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 130/208 (62%), Positives = 150/208 (72%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF+TLQGEG  AGR AVFCRF+GCNLWSGRE DR +A CRFCDTDFVG  GT GG
Sbjct: 3   YAVKEIFMTLQGEGALAGRAAVFCRFAGCNLWSGREADRATATCRFCDTDFVGTDGTFGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           RY+             TG    RY +LTGGEPLLQVD  LI AL+ R F + +ETNGT+ 
Sbjct: 63  RYDDAAALAAAIAGQWTGGAADRYTILTGGEPLLQVDADLIAALHARDFAVGIETNGTLI 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
           PP GIDWICVSPKAG +LK++ G ELKLV+PQ    PE +    F+RFSLQPMDGP    
Sbjct: 123 PPDGIDWICVSPKAGAELKLQQGHELKLVYPQDGAEPERFADLAFQRFSLQPMDGPEAAA 182

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           NT  AI YC  +P+WRLS+QTHK IGIR
Sbjct: 183 NTARAIQYCQHHPQWRLSLQTHKMIGIR 210


>gi|58039977|ref|YP_191941.1| hypothetical protein GOX1543 [Gluconobacter oxydans 621H]
 gi|58002391|gb|AAW61285.1| Hypothetical protein GOX1543 [Gluconobacter oxydans 621H]
          Length = 213

 Score =  318 bits (817), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 124/210 (59%), Positives = 146/210 (69%), Gaps = 3/210 (1%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE+F+TLQGEG   GR +VFCRF+GCNLWSGREQDR +A C FCDTDF+G  G  GG
Sbjct: 3   YAVKEMFVTLQGEGAQTGRASVFCRFAGCNLWSGREQDRATAACSFCDTDFIGTDGEGGG 62

Query: 64  RY-NVDQLADLIEEQWI--TGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           R+   D LAD I   W     E   RY V TGGEPLLQ+D  LI A+  RGFEIAVETNG
Sbjct: 63  RFETADALADTIAACWTSTADESGRRYVVFTGGEPLLQLDDALIAAVKARGFEIAVETNG 122

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           TI  P GIDW+CVSPK G  L    G ELKLV+PQ  + PE +    F  F LQPMDGP 
Sbjct: 123 TIAAPAGIDWVCVSPKPGGALVQTEGAELKLVYPQPELPPEMFEKLSFRHFWLQPMDGPD 182

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              NT  A+++C ++P+WRLS+QTHK IGI
Sbjct: 183 RIANTEAAVAHCLRHPRWRLSLQTHKLIGI 212


>gi|170748800|ref|YP_001755060.1| hypothetical protein Mrad2831_2382 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170655322|gb|ACB24377.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 210

 Score =  318 bits (816), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 120/207 (57%), Positives = 143/207 (69%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG  AGR AVFCRF+GCNLWSGRE DR +A CRFCDTDFVG+ G  GG
Sbjct: 3   YAVKEIFHTLQGEGAQAGRAAVFCRFAGCNLWSGREADRAAAACRFCDTDFVGMDGEGGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R+               G  E RY V TGGEPLLQ+D PLI+A++  GFEIA+ETNGT+ 
Sbjct: 63  RFADAASLADAIAATWAGGAENRYVVFTGGEPLLQLDTPLIEAVHAAGFEIAIETNGTLP 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
            P GIDWICVSPK    L    G ELKLV+PQ +  P  ++G  F+   LQPMDGP    
Sbjct: 123 APPGIDWICVSPKGSNALAQVSGHELKLVYPQADADPAAFVGLAFQHRFLQPMDGPDRAA 182

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +T  AI+YC ++ +WRLS+QTHK IGI
Sbjct: 183 STEAAIAYCRRDARWRLSLQTHKMIGI 209


>gi|162148726|ref|YP_001603187.1| hypothetical protein GDI_2954 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545507|ref|YP_002277736.1| hypothetical protein Gdia_3395 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787303|emb|CAP56897.1| conserved protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533184|gb|ACI53121.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 211

 Score =  318 bits (816), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 131/208 (62%), Positives = 155/208 (74%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y+IKE+F TLQGEG HAGR AVFCRF+GCNLWSGRE DR +A CRFCDTDFVG  GT GG
Sbjct: 3   YAIKEMFATLQGEGAHAGRAAVFCRFAGCNLWSGREADRATAVCRFCDTDFVGTDGTGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+ +   LAD I   W    +E  + V TGGEPLLQ+D  LI A+++RGFEIAVETNGT+
Sbjct: 63  RFADASSLADAIAATWEAPGREHAFVVFTGGEPLLQLDDALIGAVHERGFEIAVETNGTL 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P G+DWICVSPKAG DL  + G ELKLV+PQ ++ PE   G DF +F LQPMDGP   
Sbjct: 123 PVPPGVDWICVSPKAGADLVQRTGHELKLVYPQPDLLPERVAGLDFRQFWLQPMDGPAQA 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT  A++YC  +P+WRLS+QTHK IGI
Sbjct: 183 ANTAAAVAYCRAHPRWRLSLQTHKLIGI 210


>gi|296445573|ref|ZP_06887529.1| Radical SAM domain protein [Methylosinus trichosporium OB3b]
 gi|296256978|gb|EFH04049.1| Radical SAM domain protein [Methylosinus trichosporium OB3b]
          Length = 210

 Score =  318 bits (816), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 121/208 (58%), Positives = 141/208 (67%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE F TLQGEG H GR AVFCRF+GCNLWSGRE DR  A CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEAFKTLQGEGRHVGRAAVFCRFAGCNLWSGREIDRAEAVCRFCDTDFVGTNGEGGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R+               GE+E R+ VLTGGEP+LQ+D  L+ AL+  GFEIA+ETNGT  
Sbjct: 63  RFETAAALAAHLAGLWGGERERRFVVLTGGEPMLQIDAALVDALHDAGFEIAIETNGTRA 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
            P  IDWICVSPKAG  L    G ELKLV+PQ    PE + G  F+ F LQPMDGP   +
Sbjct: 123 APSEIDWICVSPKAGAPLVQSSGDELKLVYPQPGAEPELFEGLAFDHFLLQPMDGPEAAQ 182

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           NT  A+ YC  +P+WR S+QTHK IG+R
Sbjct: 183 NTRAAVDYCLAHPRWRFSLQTHKTIGVR 210


>gi|326318538|ref|YP_004236210.1| Radical SAM domain-containing protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375374|gb|ADX47643.1| Radical SAM domain protein [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 212

 Score =  318 bits (816), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 129/212 (60%), Positives = 147/212 (69%), Gaps = 2/212 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS+KEIF TLQGEGG AG  AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG  GT 
Sbjct: 1   MTYSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWSGREEDRSSAICRFCDTDFVGTDGTL 60

Query: 62  GGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG+Y   D LAD+I  QW   + + R  VLTGGEPLLQ+D PLI AL+ RG  IAVE+NG
Sbjct: 61  GGKYAQADALADVIAAQWPAHDADHRLVVLTGGEPLLQLDTPLIDALHARGMRIAVESNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-DFERFSLQPMDGP 179
           T+  P GIDW+CVSPKAG     + GQELKLV+PQ             FE   LQPMDGP
Sbjct: 121 TVAAPPGIDWLCVSPKAGAPWVQRAGQELKLVWPQPGFDLAELENATRFEHRFLQPMDGP 180

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               NT+L I+ C + P WRLS+QTHK  GIR
Sbjct: 181 EQAANTSLCIAACMERPAWRLSLQTHKLTGIR 212


>gi|90422441|ref|YP_530811.1| hypothetical protein RPC_0922 [Rhodopseudomonas palustris BisB18]
 gi|90104455|gb|ABD86492.1| Radical SAM [Rhodopseudomonas palustris BisB18]
          Length = 210

 Score =  318 bits (815), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 134/209 (64%), Positives = 160/209 (76%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR AVFCRF+GCNLWSGR+ DR +A+C+FCDTDFVG  GT G 
Sbjct: 3   YAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWSGRDSDRETAKCQFCDTDFVGTDGTLGD 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           RY +  +LA +I  QW TG+ + RY VLTGGEPLLQ+D  LI AL+ RGF + VETNGT+
Sbjct: 63  RYASAAELAAVIASQW-TGDDKFRYVVLTGGEPLLQLDAKLIAALHGRGFGVGVETNGTL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
            PP GIDW+CVSPKAG DL ++ G ELKLV+PQ    PE +    FERFSLQPMDG    
Sbjct: 122 APPDGIDWLCVSPKAGADLVLRRGNELKLVYPQRGALPELFADLGFERFSLQPMDGAEAA 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT  AI+YC  +P+WRLS+QTHK +GIR
Sbjct: 182 ANTASAIAYCLAHPQWRLSLQTHKTLGIR 210


>gi|121603954|ref|YP_981283.1| hypothetical protein Pnap_1045 [Polaromonas naphthalenivorans CJ2]
 gi|120592923|gb|ABM36362.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]
          Length = 211

 Score =  317 bits (814), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 126/209 (60%), Positives = 144/209 (68%), Gaps = 1/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +KEIF TLQGEG HAGR A+FCRF+GCNLWSGRE DR +A CRFCDTDFVG  GT GG
Sbjct: 3   YQVKEIFYTLQGEGSHAGRPAIFCRFAGCNLWSGREPDRATAVCRFCDTDFVGTDGTLGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ N + LA  IE QW  G+   R+ V+TGGEPLLQVD  LI AL+ RGF IAVETNGTI
Sbjct: 63  KFKNAEALAGCIEAQWPAGDSAHRFVVMTGGEPLLQVDGALIAALHARGFVIAVETNGTI 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDWICVSPKAG     + G ELK+V+PQ  +         F    LQPMD P   
Sbjct: 123 AAPPGIDWICVSPKAGAPWIQREGHELKVVWPQPALDWAELEAARFTHRYLQPMDNPAWR 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT   I+ C +NP WRLS+QTHK  GIR
Sbjct: 183 NNTEACIALCLENPAWRLSLQTHKITGIR 211


>gi|237745834|ref|ZP_04576314.1| organic radical activating enzyme [Oxalobacter formigenes HOxBLS]
 gi|229377185|gb|EEO27276.1| organic radical activating enzyme [Oxalobacter formigenes HOxBLS]
          Length = 234

 Score =  317 bits (814), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 120/208 (57%), Positives = 146/208 (70%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIF TLQGEG   GR AVFCRFSGCNLWSGREQDR  A CRFCDTDFVG  G +GG
Sbjct: 26  YSVKEIFYTLQGEGARTGRPAVFCRFSGCNLWSGREQDRARAICRFCDTDFVGTSGERGG 85

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++   ++LA +I   W     E RY V TGGEPLLQ+D PLI  +++ GFEIA+ETNGTI
Sbjct: 86  KFPEAEKLASVIISLWPREHAENRYVVFTGGEPLLQLDRPLIGIMHRAGFEIAIETNGTI 145

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+G+DW+CVSPK G  L +K G ELK+V PQ   +  +Y    F  F +QPMDG   E
Sbjct: 146 PVPEGVDWVCVSPKVGSTLVVKSGDELKVVIPQAGQNLADYEDLSFSHFYVQPMDGENRE 205

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            N  +AI  C +NPKW+L +QTHK++ I
Sbjct: 206 RNIKMAIDTCLKNPKWKLGLQTHKYLQI 233


>gi|154247119|ref|YP_001418077.1| hypothetical protein Xaut_3190 [Xanthobacter autotrophicus Py2]
 gi|154161204|gb|ABS68420.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2]
          Length = 211

 Score =  317 bits (813), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 127/208 (61%), Positives = 150/208 (72%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE+FLTLQGEG  AGR AVFCRF+GCNLWSGRE DR  AQCRFCDTDFVG+ G  GG
Sbjct: 3   YAVKEMFLTLQGEGAQAGRAAVFCRFAGCNLWSGREDDRAEAQCRFCDTDFVGMDGEGGG 62

Query: 64  RYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+             W +   E R+ V TGGEPLLQ+D  L+ A++  GFEIAVETNGT+
Sbjct: 63  RFADAATLAAAIAATWGSAAPERRFVVFTGGEPLLQLDTALVDAVHALGFEIAVETNGTV 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           + P GIDWIC+SPKAG DLK+  G ELKLVFPQ  ++PE   G DF  F LQPMDGP   
Sbjct: 123 DAPGGIDWICMSPKAGTDLKVTRGHELKLVFPQPGLAPEGLAGLDFTHFFLQPMDGPDRL 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT  A++YC  +P+WRLS+QTHK IGI
Sbjct: 183 RNTEAAVAYCLSHPRWRLSLQTHKMIGI 210


>gi|120612485|ref|YP_972163.1| hypothetical protein Aave_3844 [Acidovorax citrulli AAC00-1]
 gi|120590949|gb|ABM34389.1| conserved hypothetical protein [Acidovorax citrulli AAC00-1]
          Length = 212

 Score =  316 bits (812), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 129/212 (60%), Positives = 147/212 (69%), Gaps = 2/212 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS+KEIF TLQGEGG AG  AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG  GT 
Sbjct: 1   MTYSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWSGREEDRSSAVCRFCDTDFVGTDGTL 60

Query: 62  GGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG+Y   + LAD+I  QW   + + R  VLTGGEPLLQ+D PLI AL+ RG  IAVE+NG
Sbjct: 61  GGKYAQAEALADVIAAQWPAHDADHRLVVLTGGEPLLQLDTPLIDALHARGMRIAVESNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS-PENYIGFDFERFSLQPMDGP 179
           T+  P GIDW+CVSPKAG     + GQELKLV+PQ      E      FE   LQPMDGP
Sbjct: 121 TVAAPPGIDWLCVSPKAGAPWVQRAGQELKLVWPQPGFDLAELESATRFEHRFLQPMDGP 180

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               NT L I+ C + P WRLS+QTHK  GIR
Sbjct: 181 DQAANTGLCIAACMERPAWRLSLQTHKLTGIR 212


>gi|153876026|ref|ZP_02003554.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152067510|gb|EDN66446.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 209

 Score =  316 bits (811), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 121/208 (58%), Positives = 151/208 (72%), Gaps = 3/208 (1%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIF +LQGEG   GR A+FCRF+GCNLWSGRE+DR  A C+FCDT+F+G  G  GG
Sbjct: 3   YSVKEIFYSLQGEGHQTGRAAIFCRFAGCNLWSGREEDRSIASCQFCDTNFIGTNGQNGG 62

Query: 64  RYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++   Q LA+ +    I   K     + TGGEPLLQ+D PLI+A +  GFEIA+ETNGT+
Sbjct: 63  KFTSAQALAEKVA--TIGMMKHFPLIICTGGEPLLQLDEPLIKAFHHIGFEIAIETNGTL 120

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDWICVSPK    LK++ G ELKLVFPQ N  PE +  FDF+ F LQPMDGP L+
Sbjct: 121 PAPPNIDWICVSPKGNAPLKLQTGNELKLVFPQPNAPPELFEQFDFQYFFLQPMDGPELK 180

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +NT LA+ YC ++P+WRLS+QTHK +GI
Sbjct: 181 KNTQLALRYCLEHPQWRLSLQTHKLLGI 208


>gi|34498964|ref|NP_903179.1| hypothetical protein CV_3509 [Chromobacterium violaceum ATCC 12472]
 gi|34104813|gb|AAQ61170.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 211

 Score =  316 bits (811), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 128/212 (60%), Positives = 149/212 (70%), Gaps = 2/212 (0%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y++KEIF TLQGEG  AGR AVFCRF+GCNLWSGRE+DR  A C+FCDTDFVG  G 
Sbjct: 1   MTTYTVKEIFYTLQGEGRQAGRAAVFCRFAGCNLWSGREEDRAKAVCQFCDTDFVG-AGP 59

Query: 61  KGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
            GG+++    LA  I  +W        Y V TGGEPLLQ+D  LI AL+ +GFEIAVETN
Sbjct: 60  DGGKFDGAAALAARIAAEWPKDAGGSPYVVCTGGEPLLQLDAELIGALHAQGFEIAVETN 119

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GT+  P G+DWICVSPKAG +LK + G ELKLV+PQ    PE     DF  F LQPMDGP
Sbjct: 120 GTVAAPAGLDWICVSPKAGAELKQRAGDELKLVYPQAAQMPETVADLDFGTFYLQPMDGP 179

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            L  NT  AI+YC  +P+WRLSVQTHK + IR
Sbjct: 180 ELAANTRAAIAYCMAHPQWRLSVQTHKVVDIR 211


>gi|13474945|ref|NP_106515.1| hypothetical protein msl8680 [Mesorhizobium loti MAFF303099]
 gi|14025701|dbj|BAB52301.1| msl8680 [Mesorhizobium loti MAFF303099]
          Length = 211

 Score =  315 bits (809), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 123/208 (59%), Positives = 147/208 (70%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE DR  A C FCDTDFVG+ G  G 
Sbjct: 3   YAVKEIFYTLQGEGRNAGRAAVFCRFAGCNLWSGREGDRAKAFCGFCDTDFVGVDGPGGR 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
            +    QLA  +E+ W       R+ VLTGGEPLLQ+D  L++AL+   FEIAVETNGTI
Sbjct: 63  HFDTARQLALAVEQAWRGQGAGQRFVVLTGGEPLLQIDEELLEALHCLAFEIAVETNGTI 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDW+CVSPK    L +  G ELKLV+PQ+   PE++    FE   LQPMDGP  E
Sbjct: 123 PTPAGIDWLCVSPKCNARLVVMAGDELKLVYPQIGAEPEHFEVLAFEHLLLQPMDGPERE 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT  A++YC  NP+WRLS+QTHKF+GI
Sbjct: 183 ANTAAAVAYCLANPRWRLSLQTHKFLGI 210


>gi|217977590|ref|YP_002361737.1| radical SAM domain protein [Methylocella silvestris BL2]
 gi|217502966|gb|ACK50375.1| radical SAM domain protein [Methylocella silvestris BL2]
          Length = 211

 Score =  315 bits (809), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 125/211 (59%), Positives = 152/211 (72%), Gaps = 2/211 (0%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y++KEIF TLQGEG  AGR AVFCRF+GCNLWSGRE+DR +A C FCDTDF+G  G 
Sbjct: 1   MGRYAVKEIFPTLQGEGAQAGRAAVFCRFAGCNLWSGREKDRAAAACPFCDTDFIGTDGP 60

Query: 61  KGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
            GG +   ++LA  IE  W  G   GRY V TGGEPLLQ+D  LI A++ RGFE AVETN
Sbjct: 61  GGGVFGGAEELAGAIEAAW-LGGPAGRYVVFTGGEPLLQLDDALIAAVHARGFEAAVETN 119

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GT+EPP G+DW+CVSPKAG  + +  G ELKLV+PQ ++ P+   G  F  F LQPMDG 
Sbjct: 120 GTLEPPAGVDWLCVSPKAGAPIVVTAGSELKLVYPQDDLLPDALSGLQFAHFWLQPMDGA 179

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            ++ NT  A++YC  +P WRLS+QTHK IGI
Sbjct: 180 NVDANTKAAVAYCLAHPDWRLSLQTHKLIGI 210


>gi|148554323|ref|YP_001261905.1| organic radical activating-like protein [Sphingomonas wittichii
           RW1]
 gi|148499513|gb|ABQ67767.1| Organic radical activating enzymes-like protein [Sphingomonas
           wittichii RW1]
          Length = 210

 Score =  315 bits (808), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 130/212 (61%), Positives = 152/212 (71%), Gaps = 3/212 (1%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y++KE+FLTLQGEG   GR AVF RF+GCNLWSGRE+DR  AQCRFCDTDFVG+ G 
Sbjct: 1   MAGYAVKEMFLTLQGEGVQVGRRAVFLRFAGCNLWSGREEDRADAQCRFCDTDFVGLDGD 60

Query: 61  KGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
            GGRY + D LAD     W  G+  G + V+TGGEPLLQVD  L+ AL  RGFE AVETN
Sbjct: 61  NGGRYPHADALADKAIALW--GDLAGAFIVMTGGEPLLQVDDALVAALKARGFETAVETN 118

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GT   P GIDWICVSPKAG D+ ++ G ELKLV+PQ  + P    G+DFE F LQPMDG 
Sbjct: 119 GTQPAPAGIDWICVSPKAGTDIVLRRGNELKLVWPQPGIDPAALEGWDFEHFLLQPMDGA 178

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            L+E    AI+Y   +P+WRLS QTHK +GIR
Sbjct: 179 QLDEARAAAIAYVMDHPRWRLSTQTHKVVGIR 210


>gi|33596287|ref|NP_883930.1| hypothetical protein BPP1653 [Bordetella parapertussis 12822]
 gi|33602051|ref|NP_889611.1| hypothetical protein BB3075 [Bordetella bronchiseptica RB50]
 gi|33566056|emb|CAE36954.1| conserved hypothetical protein [Bordetella parapertussis]
 gi|33576489|emb|CAE33567.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 210

 Score =  315 bits (807), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 115/207 (55%), Positives = 140/207 (67%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KE+F TLQGEG  AGR AVFCRF+GCNLW+GRE DR  A C FCDTDFVG  G  GG
Sbjct: 3   YSVKELFKTLQGEGAQAGRAAVFCRFAGCNLWTGRESDRAGAACTFCDTDFVGTDGQGGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           ++                    RY V TGGEPLLQ+D  L+QA++ +GF +A+ETNGT+ 
Sbjct: 63  KFADAAGLADAIAACWGEHPADRYVVFTGGEPLLQLDEALLQAVHAQGFTVAIETNGTLP 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
           PP GIDWICVSPK    + ++ G ELKLVFPQ +  PE +    FE F LQPMDGP    
Sbjct: 123 PPPGIDWICVSPKGRAPVVVERGHELKLVFPQADARPEAFAHLAFEHFFLQPMDGPARAA 182

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +T  A+ YC  +P+WRLS+QTHK+IGI
Sbjct: 183 HTAQAVQYCLDHPQWRLSLQTHKYIGI 209


>gi|41019307|gb|AAR98565.1| GntS [Micromonospora echinospora]
          Length = 212

 Score =  315 bits (807), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 117/211 (55%), Positives = 140/211 (66%), Gaps = 3/211 (1%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y IKEIF TLQGEG HAGR AVFCRF+ CNLW+GRE++R  A CRFCDTDFVG  G  G
Sbjct: 1   MYRIKEIFYTLQGEGTHAGRPAVFCRFTSCNLWTGREEERYRAICRFCDTDFVGTDGPGG 60

Query: 63  GRYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           GR+               G+   R   Y V TGGEPLLQ+D   + AL+  GFE+AVETN
Sbjct: 61  GRFGTAAELAAAVAAAWQGQAHPRSRPYVVCTGGEPLLQLDEAAVSALHDAGFEVAVETN 120

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GT   P GIDW CVSPKAG ++ +  G +LKLV+PQ    P  +   DF  F LQPMDGP
Sbjct: 121 GTRPAPPGIDWTCVSPKAGAEVVLTRGDDLKLVYPQPGAEPARFEHLDFTHFMLQPMDGP 180

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               NT  A+ YC ++P+WRLS+QTHK+IGI
Sbjct: 181 DRVANTEAAVRYCLEHPQWRLSLQTHKYIGI 211


>gi|329889514|ref|ZP_08267857.1| radical SAM domain-containing protein [Brevundimonas diminuta ATCC
           11568]
 gi|328844815|gb|EGF94379.1| radical SAM domain-containing protein [Brevundimonas diminuta ATCC
           11568]
          Length = 211

 Score =  314 bits (806), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 121/211 (57%), Positives = 150/211 (71%), Gaps = 1/211 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS KE+FLT+QGEGG AGR AVF RF+GCNLWSG E+DR +A C FCDTDFVG+ G  
Sbjct: 1   MTYSAKEVFLTVQGEGGQAGRPAVFLRFAGCNLWSGLERDRATAICTFCDTDFVGVNGDG 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++   D +AD +   W   E + +  V TGGEPL+Q+D  LI AL+ RGFEIA+E+NG
Sbjct: 61  GGKFKTADLMADHVAGMWRGREGDPKLVVCTGGEPLMQLDTLLIDALHARGFEIAIESNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T+  P+GIDWIC+SPKA   +    GQELKLV+PQ    P+ +   DF+ F LQPMDGP 
Sbjct: 121 TLVAPEGIDWICISPKADAPVVQTSGQELKLVYPQPLAMPDRFESLDFQHFWLQPMDGPD 180

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
              NT  AI YC  +P+WRLSVQTHK+IG+R
Sbjct: 181 QAANTAAAIEYCLTHPQWRLSVQTHKYIGVR 211


>gi|33593629|ref|NP_881273.1| hypothetical protein BP2659 [Bordetella pertussis Tohama I]
 gi|33563702|emb|CAE42935.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
          Length = 210

 Score =  314 bits (805), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 115/207 (55%), Positives = 140/207 (67%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KE+F TLQGEG  AGR AVFCRF+GCNLW+GRE DR  A C FCDTDFVG  G  GG
Sbjct: 3   YSVKELFKTLQGEGAQAGRAAVFCRFAGCNLWTGRESDRAGAACTFCDTDFVGTDGQGGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           ++                    RY V TGGEPLLQ+D  L+QA++ +GF +A+ETNGT+ 
Sbjct: 63  KFADAAGLADAIAACWGEHPADRYVVFTGGEPLLQLDEALLQAVHAQGFTVAIETNGTLP 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
           PP GIDWICVSPK    + ++ G ELKLVFPQ +  PE +    FE F LQPMDGP    
Sbjct: 123 PPPGIDWICVSPKGRAPVVVERGHELKLVFPQADARPEAFAHLAFEHFFLQPMDGPARAA 182

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +T  A+ YC  +P+WRLS+QTHK+IGI
Sbjct: 183 HTTQAVQYCLDHPQWRLSLQTHKYIGI 209


>gi|160897280|ref|YP_001562862.1| hypothetical protein Daci_1837 [Delftia acidovorans SPH-1]
 gi|160362864|gb|ABX34477.1| conserved hypothetical protein [Delftia acidovorans SPH-1]
          Length = 212

 Score =  313 bits (804), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 125/212 (58%), Positives = 151/212 (71%), Gaps = 2/212 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS+KEIF TLQGEGG AG  A+FCRF+GCNLW+GREQDR SA C+FCDTDFVG  GT 
Sbjct: 1   MTYSVKEIFYTLQGEGGQAGTPAIFCRFTGCNLWTGREQDRASAICQFCDTDFVGTDGTL 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++   D LA+ I  QW  G+ + R  VLTGGEPLLQVD PLI AL+ RGF I+VE+NG
Sbjct: 61  GGKFATADALAERILSQWPAGDSQHRMVVLTGGEPLLQVDEPLIAALHARGFRISVESNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-YIGFDFERFSLQPMDGP 179
           T+  P+GIDW+C+SPKAG +   + GQELKLV+PQ     +    G  F+R+ LQPMD  
Sbjct: 121 TVAAPEGIDWLCISPKAGAEWVQRSGQELKLVWPQPGFDLQAIEAGTRFDRYFLQPMDNV 180

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
              +NT   I+ C Q P WRLS+QTHK  GIR
Sbjct: 181 LQADNTAACIAQCLQRPAWRLSLQTHKLTGIR 212


>gi|20804093|emb|CAD31296.1| HYPOTHETICAL CONSERVED PROTEIN [Mesorhizobium loti R7A]
          Length = 211

 Score =  313 bits (804), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 120/208 (57%), Positives = 145/208 (69%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE DR  A C FCDTDFVG+ G  GG
Sbjct: 3   YAVKEIFYTLQGEGRNAGRAAVFCRFAGCNLWSGREGDRARAFCEFCDTDFVGVDGPGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
            +    + A  +E+ W       R  VLTGGEPLLQ+D  L++AL+   FEIAVETNGTI
Sbjct: 63  HFATAQEFALAVEQAWRGSGTRQRLVVLTGGEPLLQIDEELLEALHSLAFEIAVETNGTI 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
               GIDW+CVSPK    L +  G ELKLV+P++   PE++    FE   LQPMDGP  E
Sbjct: 123 PTLAGIDWLCVSPKCNARLVVMAGDELKLVYPRIGAEPEHFEVLAFEHLLLQPMDGPERE 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT  A++YC  NP+WRLS+QTHKF+GI
Sbjct: 183 ANTAAAVAYCLANPRWRLSLQTHKFLGI 210


>gi|83749823|ref|ZP_00946794.1| Queuosine biosynthesis protein QueE [Ralstonia solanacearum UW551]
 gi|207723445|ref|YP_002253844.1| organic radical activating enzyme protein [Ralstonia solanacearum
           MolK2]
 gi|207743201|ref|YP_002259593.1| organic radical activating enzyme protein [Ralstonia solanacearum
           IPO1609]
 gi|83723503|gb|EAP70710.1| Queuosine biosynthesis protein QueE [Ralstonia solanacearum UW551]
 gi|206588646|emb|CAQ35609.1| organic radical activating enzyme protein [Ralstonia solanacearum
           MolK2]
 gi|206594598|emb|CAQ61525.1| organic radical activating enzyme protein [Ralstonia solanacearum
           IPO1609]
          Length = 224

 Score =  313 bits (803), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 125/212 (58%), Positives = 148/212 (69%), Gaps = 2/212 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG  GT 
Sbjct: 13  MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRAAAVCQFCDTDFVGTDGTL 72

Query: 62  GGRY-NVDQLADLIEEQWIT-GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           GG+Y   D LADL+  QW           V TGGEPLLQ+D PLI AL+ RGFEIAVETN
Sbjct: 73  GGKYATADALADLVAAQWPADATGGQPLVVCTGGEPLLQLDRPLIDALHARGFEIAVETN 132

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GT+  P+GIDW+CVSPK G +L +  G ELK+V PQ     + Y   DF  F LQPMDGP
Sbjct: 133 GTVAVPEGIDWVCVSPKMGAELVVTRGDELKVVIPQPGQDLDAYERLDFRHFFLQPMDGP 192

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
              +NT LA+  C + P+W LS+QTHK +GIR
Sbjct: 193 LARQNTALAVELCQRRPRWHLSLQTHKMLGIR 224


>gi|114569269|ref|YP_755949.1| radical SAM domain-containing protein [Maricaulis maris MCS10]
 gi|114339731|gb|ABI65011.1| Radical SAM domain protein [Maricaulis maris MCS10]
          Length = 209

 Score =  312 bits (801), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 123/207 (59%), Positives = 143/207 (69%), Gaps = 3/207 (1%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KE FLT+QGEG  AGR AVF RFSGCNLWSGREQDR  A C FCDTDFVG+ G  GG
Sbjct: 3   YSVKERFLTVQGEGAQAGRPAVFLRFSGCNLWSGREQDRHKAVCNFCDTDFVGMDGPGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+     L D + E W  G +     V TGGEPLLQ+D  LI AL+ RGFEIAVETNGT+
Sbjct: 63  RFKTAVSLVDAVAELWPGGGRP--LVVCTGGEPLLQLDTSLIDALHARGFEIAVETNGTV 120

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDWI VSPK    +    G ELKLV+PQ  + P  +  +DF+RFSLQPMDGP + 
Sbjct: 121 RAPDGIDWITVSPKGTAPVVQTSGHELKLVYPQPELDPTAFEDWDFKRFSLQPMDGPQMM 180

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIG 209
           EN   A  YC  +P+W LS+QTHK+IG
Sbjct: 181 ENAQAAFDYCLAHPQWSLSLQTHKWIG 207


>gi|85814032|emb|CAF31448.1| putative gentamicin production protein [Micromonospora echinospora]
          Length = 215

 Score =  312 bits (800), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 117/210 (55%), Positives = 139/210 (66%), Gaps = 3/210 (1%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y IKEIF TLQGEG HAGR AVFCRF+ CNLW+GRE++R  A CRFCDTDFVG  G  GG
Sbjct: 5   YRIKEIFYTLQGEGTHAGRPAVFCRFTSCNLWTGREEERYRAICRFCDTDFVGTDGPGGG 64

Query: 64  RYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           R+               G+   R   Y V TGGEPLLQ+D   + AL+  GFE+AVETNG
Sbjct: 65  RFGTAAELAAAVAAAWQGQAHPRSRPYVVCTGGEPLLQLDEAAVSALHDAGFEVAVETNG 124

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T   P GIDW CVSPKAG ++ +  G +LKLV+PQ    P  +   DF  F LQPMDGP 
Sbjct: 125 TRPAPPGIDWTCVSPKAGAEVVLTRGDDLKLVYPQPGAEPARFEHLDFTHFMLQPMDGPD 184

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              NT  A+ YC ++P+WRLS+QTHK+IGI
Sbjct: 185 RVANTEAAVRYCLEHPQWRLSLQTHKYIGI 214


>gi|224038930|gb|ACN38359.1| putative sisomicin production protein [Micromonospora inyonensis]
          Length = 215

 Score =  311 bits (799), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 117/210 (55%), Positives = 140/210 (66%), Gaps = 3/210 (1%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y IKEIF TLQGEG HAGR AVFCRF+ CNLW+GRE+DR  A C+FCDTDFVG  G  GG
Sbjct: 5   YRIKEIFYTLQGEGTHAGRPAVFCRFTSCNLWTGREEDRHRAICQFCDTDFVGTDGPGGG 64

Query: 64  RYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           R+               G+   R   Y V TGGEPLLQ+D   + AL++ GFE+AVETNG
Sbjct: 65  RFATAAELAAAVATAWRGQAHPRSRPYVVCTGGEPLLQLDEAAVAALHEAGFEVAVETNG 124

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T   P G+DW+CVSPKAG DL +  G +LKLV+PQ    P  +   DF  F LQPMDGP 
Sbjct: 125 TRPAPPGLDWVCVSPKAGADLVLTRGDDLKLVYPQPGAEPGRFEHLDFTHFMLQPMDGPD 184

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              NT  A+ YC ++P+WR S+QTHK+IGI
Sbjct: 185 RVANTEAAVRYCLEHPQWRFSLQTHKYIGI 214


>gi|114328969|ref|YP_746126.1| queuosine biosynthesis protein QueE [Granulibacter bethesdensis
           CGDNIH1]
 gi|114317143|gb|ABI63203.1| queuosine biosynthesis protein QueE [Granulibacter bethesdensis
           CGDNIH1]
          Length = 220

 Score =  311 bits (798), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 122/207 (58%), Positives = 143/207 (69%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIFLTLQGEG HAGR AVFCRF+GCNLWSGRE+DR  A C FCDTDF+G+ G  GG
Sbjct: 13  YTVKEIFLTLQGEGIHAGRPAVFCRFAGCNLWSGREEDRQMAGCTFCDTDFIGMDGENGG 72

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           RY               G  E R+ VLTGGEPLLQVD  LI AL++  F+IAVETNGT  
Sbjct: 73  RYPDAASLARAIAACWQGGAEHRFVVLTGGEPLLQVDAALIDALHEAHFQIAVETNGTQP 132

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
            P G+DWICVSPKA   L + GG ELKLVFPQ +  PE +   +F  F LQP+D     +
Sbjct: 133 APAGLDWICVSPKADNPLVLTGGDELKLVFPQPDAPPERFEALNFRHFLLQPLDDSRRAD 192

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +T  AI YC  +P+WRLSVQTHK +GI
Sbjct: 193 HTRAAIEYCLHHPRWRLSVQTHKTLGI 219


>gi|312113885|ref|YP_004011481.1| hypothetical protein Rvan_1111 [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219014|gb|ADP70382.1| hypothetical protein Rvan_1111 [Rhodomicrobium vannielii ATCC
           17100]
          Length = 213

 Score =  311 bits (797), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 117/213 (54%), Positives = 145/213 (68%), Gaps = 4/213 (1%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y++KEIF TLQGEG   GR AVF RF+GCNLW+G+ +D+  A CRFCDTDFVG  G  G
Sbjct: 1   MYTVKEIFPTLQGEGAQVGRAAVFLRFAGCNLWTGQHKDKSKAFCRFCDTDFVGYDGPNG 60

Query: 63  GRY-NVDQLADLIEEQW---ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
           G++   DQLAD++   W     G+    Y V TGGEP LQ+D P+I AL KRGF +A+E+
Sbjct: 61  GKFETADQLADIVLGMWNSLTKGKTASPYVVCTGGEPTLQLDTPMIDALKKRGFTVAIES 120

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
           NGT   P+G+DWIC+SPKAG  L  + G ELKLV+PQ    P+ +    FE F LQPMDG
Sbjct: 121 NGTRPAPRGLDWICISPKAGVPLAQREGNELKLVYPQTGALPQLFERLKFEHFFLQPMDG 180

Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           P   +N   AI YC  NP WRLS+Q HK +GIR
Sbjct: 181 PQHRDNIEAAIRYCMANPPWRLSMQMHKLVGIR 213


>gi|304320027|ref|YP_003853670.1| hypothetical protein PB2503_02257 [Parvularcula bermudensis
           HTCC2503]
 gi|303298930|gb|ADM08529.1| hypothetical protein PB2503_02257 [Parvularcula bermudensis
           HTCC2503]
          Length = 213

 Score =  311 bits (797), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 121/207 (58%), Positives = 140/207 (67%), Gaps = 2/207 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y+IKE + TLQGEG  AGR AVF RF+GCNLWSGRE DR  A CRFCDTDFVG  G  GG
Sbjct: 8   YAIKECYYTLQGEGAQAGRAAVFLRFAGCNLWSGREIDREEAICRFCDTDFVGTDGPGGG 67

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R+  ++LA  +   W  G     Y V TGGEPLLQ+D PLI AL+  GFEI VETNGTI 
Sbjct: 68  RFVAEELAAHVASFWPGGG--SPYVVATGGEPLLQLDSPLIDALHDEGFEIGVETNGTIA 125

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
            P G+DWICVSPK+  +L    G ELKLVFPQ +  P+ + G  F+ F LQPMDGP+   
Sbjct: 126 APAGLDWICVSPKSTAELVQTEGDELKLVFPQSDAPPDQFSGLAFDHFFLQPMDGPYQSI 185

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
                + YC  NP WRLS+QTHK IGI
Sbjct: 186 AIATTVDYCRANPLWRLSLQTHKLIGI 212


>gi|114319183|ref|YP_740866.1| radical SAM domain-containing protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114225577|gb|ABI55376.1| Radical SAM domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 209

 Score =  311 bits (797), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 119/210 (56%), Positives = 141/210 (67%), Gaps = 3/210 (1%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS+ EI  TLQGEG   GR AVFCRF+GCNLWSGRE  R SA CRFCDT FVG  G+ 
Sbjct: 1   MTYSVHEIHYTLQGEGAQTGRPAVFCRFAGCNLWSGREAHRASAICRFCDTAFVGTGGSG 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GGR+ + ++LA+ +   W  G +     V TGGEPLLQ+D  LI AL++RGFE+AVETNG
Sbjct: 61  GGRFRSANELAERLAGYWPGGGRP--LVVCTGGEPLLQLDSALIDALHRRGFEVAVETNG 118

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T   P G+DWICVSPKAG  L +  G ELKLV PQ    PE +    F  F LQPMDGP 
Sbjct: 119 TRPAPAGLDWICVSPKAGAPLVLTTGDELKLVHPQPGAEPERFQHLAFRHFFLQPMDGPE 178

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            E NT   + YC  +P+W LS+QTHK +GI
Sbjct: 179 REANTQACVDYCLAHPQWSLSLQTHKLLGI 208


>gi|319795394|ref|YP_004157034.1| radical SAM protein [Variovorax paradoxus EPS]
 gi|315597857|gb|ADU38923.1| Radical SAM domain protein [Variovorax paradoxus EPS]
          Length = 212

 Score =  310 bits (796), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 128/212 (60%), Positives = 147/212 (69%), Gaps = 2/212 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS+KEIF TLQGEGG AG  AVFCRF+GCNLW+GRE+DR SA CRFCDTDFVG  GT 
Sbjct: 1   MTYSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWTGREEDRASAVCRFCDTDFVGTDGTL 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++   DQLAD I  QW   + E R  VLTGGEPLLQVD  L+ AL+ R F IAVE+NG
Sbjct: 61  GGKFKTADQLADTIAAQWPANDAEHRLVVLTGGEPLLQVDAALVDALHARRFRIAVESNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-DFERFSLQPMDGP 179
           T+  P+GIDW+C+SPKAG     + GQELKLV+PQ     +      DF    LQPMDGP
Sbjct: 121 TVAAPEGIDWLCISPKAGAPWVQQRGQELKLVWPQTAFDLDAMARTGDFTHRFLQPMDGP 180

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               NT L I+ C + P WRLSVQTHK  GIR
Sbjct: 181 DRVANTELCIAECMRQPAWRLSVQTHKITGIR 212


>gi|323135766|ref|ZP_08070849.1| hypothetical protein Met49242DRAFT_0236 [Methylocystis sp. ATCC
           49242]
 gi|322398857|gb|EFY01376.1| hypothetical protein Met49242DRAFT_0236 [Methylocystis sp. ATCC
           49242]
          Length = 210

 Score =  310 bits (794), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 120/209 (57%), Positives = 147/209 (70%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +KE F T+QGEG +AGRVAVFCRF+GCNLWSGRE+DR  A C FCDT+F G+ G  GG
Sbjct: 3   YFVKEAFRTVQGEGVNAGRVAVFCRFAGCNLWSGREEDRAEAACNFCDTEFTGVDGEGGG 62

Query: 64  RYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++    +LAD +   W   + E R+ VLTGGEP+LQVD  L+ AL+  GFEIA+E+NGTI
Sbjct: 63  KFPGARELADHLVAIW-GADDEDRFIVLTGGEPMLQVDPALVDALHNEGFEIAIESNGTI 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
               GIDWICVSPKAG  +    G ELKLV+PQ  V P  +   DF  F LQPMDGP + 
Sbjct: 122 AAAPGIDWICVSPKAGAPIVQTSGSELKLVYPQPGVDPATFERLDFRHFLLQPMDGPEIV 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT  A+ YC  +P+WRLS+QTHK IG+R
Sbjct: 182 RNTKAAVDYCLAHPRWRLSLQTHKMIGVR 210


>gi|103486840|ref|YP_616401.1| hypothetical protein Sala_1354 [Sphingopyxis alaskensis RB2256]
 gi|98976917|gb|ABF53068.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256]
          Length = 210

 Score =  308 bits (791), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 120/209 (57%), Positives = 142/209 (67%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS+KEIFLTLQGEG  AGR AVFCRF+GCNLW+GREQDR  A CRFCDTDFVG  GT G 
Sbjct: 3   YSVKEIFLTLQGEGAQAGRRAVFCRFAGCNLWTGREQDRAKAICRFCDTDFVGTDGTLGA 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +Y +   LAD+I E W  G  + RY VLTGGEP+LQVD  LI AL+ RGF IA+E+NGT+
Sbjct: 63  KYRDAAALADVIAESWGPGSDD-RYVVLTGGEPMLQVDDALIDALHARGFTIAIESNGTL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+ IDWICVSPKAG +L    G ELKLV+PQ           DF    +QP+D     
Sbjct: 122 PIPRSIDWICVSPKAGSELVQSSGDELKLVWPQPGSDVAKLAALDFRHLLVQPLDDRNAA 181

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            N    I     +P+WRLS+QTHK +G+R
Sbjct: 182 ANVQACIDLVMADPRWRLSLQTHKSLGLR 210


>gi|221065388|ref|ZP_03541493.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
 gi|220710411|gb|EED65779.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
          Length = 212

 Score =  307 bits (788), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 122/212 (57%), Positives = 143/212 (67%), Gaps = 2/212 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS+KEIF TLQGEGG AG  AVFCRF+GCNLW+GREQDR +A C+FCDTDFVG  GT 
Sbjct: 1   MTYSVKEIFYTLQGEGGQAGTPAVFCRFAGCNLWTGREQDRPNAICQFCDTDFVGTDGTL 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++   D LA+ I  QW   +   R  VLTGGEPLLQVD  LI AL+ RGF I+VE+NG
Sbjct: 61  GGKFATADALAERILSQWPADDSLHRMVVLTGGEPLLQVDEALIAALHARGFRISVESNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG-FDFERFSLQPMDGP 179
           T+  P+GIDW+C+SPKAG D   + GQELKLV+PQ            DF+ + LQPMD  
Sbjct: 121 TVAAPEGIDWLCISPKAGADWIQRSGQELKLVWPQPTFDLAAIEASTDFQHYFLQPMDNA 180

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               N    I  C Q P WRLS+QTHK  GIR
Sbjct: 181 QQSGNITACIEQCMQRPGWRLSLQTHKLTGIR 212


>gi|83649266|ref|YP_437701.1| organic radical activating protein [Hahella chejuensis KCTC 2396]
 gi|83637309|gb|ABC33276.1| Organic radical activating enzyme [Hahella chejuensis KCTC 2396]
          Length = 217

 Score =  307 bits (787), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 117/217 (53%), Positives = 145/217 (66%), Gaps = 10/217 (4%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y +KE F TLQGEG H GR AVFCRFS CNLW+GRE+DR  A C FCDTDF+G+ G  G
Sbjct: 1   MYRVKEAFYTLQGEGAHQGRPAVFCRFSKCNLWTGREKDRAGAVCNFCDTDFIGVDGQNG 60

Query: 63  GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           G++   ++LAD I   W   E++ R+ V TGGEPLLQ+D PLI+A + RGFE+AVETNGT
Sbjct: 61  GKFATAEELADHILAFWPP-EQDNRFVVCTGGEPLLQLDEPLIEAFHARGFEVAVETNGT 119

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           +  P GIDW+CVSPK   ++ I    ELKLV+PQ    PE +      R  L PM  P +
Sbjct: 120 LPAPAGIDWLCVSPKGRAEVVITECDELKLVYPQPEAPPERFSDIRAGRHYLSPMANPLV 179

Query: 182 EE--------NTNLAISYCFQNPKWRLSVQTHKFIGI 210
            E        NT LA+ YC ++PKWRLSVQ HK +GI
Sbjct: 180 REGNDEQKRRNTQLAMEYCMRHPKWRLSVQLHKILGI 216


>gi|299531400|ref|ZP_07044808.1| hypothetical protein CTS44_11451 [Comamonas testosteroni S44]
 gi|298720563|gb|EFI61512.1| hypothetical protein CTS44_11451 [Comamonas testosteroni S44]
          Length = 212

 Score =  306 bits (784), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 121/212 (57%), Positives = 144/212 (67%), Gaps = 2/212 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS+KEIF TLQGEGG AG  AVFCRF+GCNLW+GREQDR  A C+FCDTDFVG  GT 
Sbjct: 1   MTYSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWTGREQDRPKAICQFCDTDFVGTDGTL 60

Query: 62  GGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++   D+LA+ I  QW   +   R  VLTGGEPLLQVD  LI AL+ RGF I+VE+NG
Sbjct: 61  GGKFTTADELAERILGQWPADDSRHRMVVLTGGEPLLQVDQALIAALHARGFRISVESNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG-FDFERFSLQPMDGP 179
           T+  P+GIDW+C+SPKAG D   + GQELKLV+PQ            +F+ + LQPMD  
Sbjct: 121 TVTAPEGIDWLCISPKAGADWIQRSGQELKLVWPQPTFDLAAIEASTEFQHYFLQPMDNA 180

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               N    I+ C Q P WRLS+QTHK  GIR
Sbjct: 181 QQSSNIAACIAQCMQRPGWRLSLQTHKLTGIR 212


>gi|296115261|ref|ZP_06833901.1| hypothetical protein GXY_05748 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978164|gb|EFG84902.1| hypothetical protein GXY_05748 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 211

 Score =  306 bits (784), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 121/208 (58%), Positives = 141/208 (67%), Gaps = 1/208 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG  AGR AVFCRF+GCNLWSGRE DR  A CRFCDTDF+G  G  GG
Sbjct: 3   YTVKEIFPTLQGEGSQAGRAAVFCRFAGCNLWSGREIDRDDATCRFCDTDFIGTDGMGGG 62

Query: 64  RYNVDQLADLIEEQWITG-EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+                  +   + V TGGEPLLQ+D  L+ A++ RGF IAVETNGTI
Sbjct: 63  RFADAASLADAIAAAWPAASRRDAFVVFTGGEPLLQLDAALVAAMHARGFFIAVETNGTI 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDWIC+SPKAG  L    G ELKLVFPQ ++ PE   G DF +F LQPMDGP   
Sbjct: 123 RAPDGIDWICMSPKAGAPLVQTSGHELKLVFPQPDLMPEQVAGLDFAQFWLQPMDGPERV 182

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT+ A+ YC  +P+WRLS+QTHK IGI
Sbjct: 183 SNTSHAVEYCMAHPQWRLSLQTHKLIGI 210


>gi|89093158|ref|ZP_01166108.1| hypothetical protein MED92_03737 [Oceanospirillum sp. MED92]
 gi|89082454|gb|EAR61676.1| hypothetical protein MED92_03737 [Oceanospirillum sp. MED92]
          Length = 210

 Score =  306 bits (784), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 112/209 (53%), Positives = 140/209 (66%), Gaps = 1/209 (0%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +YS+KEIF +LQGEG  +GR ++FCRF+GCNLWSGREQDR  A C FCDTDF+G  G  G
Sbjct: 1   MYSVKEIFFSLQGEGAQSGRASIFCRFAGCNLWSGREQDREKAVCDFCDTDFIGTDGQNG 60

Query: 63  GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           G++     L + ++E W        Y + TGGEP LQ+D  LI   ++ GFE+AVETNGT
Sbjct: 61  GKFETAQALCNFLQEFWPNNSSIPPYIIFTGGEPALQLDQDLIDCCHEYGFEVAVETNGT 120

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
              P GIDW+CVSPKA  +L I  G ELKLV+PQ    PE +   +F  F LQPMDGP  
Sbjct: 121 KPLPSGIDWVCVSPKADAELVITKGDELKLVYPQALAMPEKFASLNFRHFYLQPMDGPAR 180

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +  T   I YC Q+PKW+LS+Q HK +GI
Sbjct: 181 QLYTKEVIDYCLQHPKWKLSLQNHKVLGI 209


>gi|163850651|ref|YP_001638694.1| hypothetical protein Mext_1221 [Methylobacterium extorquens PA1]
 gi|163662256|gb|ABY29623.1| conserved hypothetical protein [Methylobacterium extorquens PA1]
          Length = 212

 Score =  306 bits (784), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 127/210 (60%), Positives = 147/210 (70%), Gaps = 4/210 (1%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE+F TLQGEG  AGR AVFCRFSGCNLWSGRE+DR  A CRFCDTDFVG+ G  GG
Sbjct: 3   YAVKELFHTLQGEGAQAGRAAVFCRFSGCNLWSGREEDRAGAACRFCDTDFVGMDGEGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+ + + LAD I   W  G    RY V TGGEPLLQ+D  LI A++ RGFE+AVETNGT+
Sbjct: 63  RFASAEILADAIAATW-AGGTSNRYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGTL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFSLQPMDGPF 180
             P GIDWICVSPKAG  L    G ELKLVFPQ     +PE +    F    LQPMDGP 
Sbjct: 122 PAPPGIDWICVSPKAGNPLVQTSGDELKLVFPQAEAEAAPERFSDLPFRHHFLQPMDGPD 181

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              +T  A++YC  N +WRLS+QTHK IGI
Sbjct: 182 AAAHTAAAVAYCRSNARWRLSLQTHKIIGI 211


>gi|218529375|ref|YP_002420191.1| hypothetical protein Mchl_1382 [Methylobacterium chloromethanicum
           CM4]
 gi|240137705|ref|YP_002962176.1| hypothetical protein MexAM1_META1p1004 [Methylobacterium extorquens
           AM1]
 gi|218521678|gb|ACK82263.1| conserved hypothetical protein [Methylobacterium chloromethanicum
           CM4]
 gi|240007673|gb|ACS38899.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 212

 Score =  306 bits (784), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 127/210 (60%), Positives = 147/210 (70%), Gaps = 4/210 (1%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE+F TLQGEG  AGR AVFCRFSGCNLWSGRE+DR  A CRFCDTDFVG+ G  GG
Sbjct: 3   YAVKELFHTLQGEGAQAGRAAVFCRFSGCNLWSGREEDRAGAACRFCDTDFVGMDGEGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           R+ + + LAD I   W  G    RY V TGGEPLLQ+D  LI A++ RGFE+AVETNGT+
Sbjct: 63  RFASAEILADAIAATW-AGGTANRYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGTL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFSLQPMDGPF 180
             P GIDWICVSPKAG  L    G ELKLVFPQ     +PE +    F    LQPMDGP 
Sbjct: 122 PAPPGIDWICVSPKAGNPLVQTSGDELKLVFPQAEAEAAPERFSDLPFRHHFLQPMDGPD 181

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              +T  A++YC  N +WRLS+QTHK IGI
Sbjct: 182 AAAHTAAAVAYCRSNARWRLSLQTHKIIGI 211


>gi|254560274|ref|YP_003067369.1| hypothetical protein METDI1804 [Methylobacterium extorquens DM4]
 gi|254267552|emb|CAX23394.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
          Length = 212

 Score =  305 bits (782), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 122/209 (58%), Positives = 142/209 (67%), Gaps = 2/209 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE+F TLQGEG  AGR AVFCRFSGCNLWSGRE+DR  A CRFCDTDFVG+ G  GG
Sbjct: 3   YAVKELFHTLQGEGAQAGRAAVFCRFSGCNLWSGREEDRAGAACRFCDTDFVGMDGEGGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R+   ++          G    RY V TGGEPLLQ+D  LI A++ RGFE+AVETNGT+ 
Sbjct: 63  RFASAEILAGAIAATWAGGTANRYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGTLP 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFSLQPMDGPFL 181
            P GIDWICVSPKAG  L    G ELKLVFPQ     +PE +    F    LQPMDGP  
Sbjct: 123 APPGIDWICVSPKAGNPLVQTSGDELKLVFPQAEAEAAPERFSDLPFRHHFLQPMDGPDA 182

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             +T  A++YC  N +WRLS+QTHK IGI
Sbjct: 183 AAHTAAAVAYCRSNARWRLSLQTHKIIGI 211


>gi|264679996|ref|YP_003279905.1| hypothetical protein CtCNB1_3863 [Comamonas testosteroni CNB-2]
 gi|262210511|gb|ACY34609.1| conserved hypothetical protein [Comamonas testosteroni CNB-2]
          Length = 212

 Score =  305 bits (781), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 121/212 (57%), Positives = 144/212 (67%), Gaps = 2/212 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS+KEIF TLQGEGG AG  AVFCRF+GCNLW+GREQDR  A C+FCDTDFVG  GT 
Sbjct: 1   MTYSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWTGREQDRPKAICQFCDTDFVGTDGTL 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++   D+LA+ I  QW   +   R  VLTGGEPLLQVD  LI AL+ RGF I+VE+NG
Sbjct: 61  GGKFATADELAERILGQWPADDSRHRMVVLTGGEPLLQVDQALIAALHVRGFRISVESNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG-FDFERFSLQPMDGP 179
           T+  P+GIDW+C+SPKAG D   + GQELKLV+PQ            +F+ + LQPMD  
Sbjct: 121 TVAAPEGIDWLCISPKAGADWIQRSGQELKLVWPQPTFDLAAIEASTEFQHYFLQPMDNA 180

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               N    I+ C Q P WRLS+QTHK  GIR
Sbjct: 181 QQSSNIAACIAQCMQRPGWRLSLQTHKLTGIR 212


>gi|239817064|ref|YP_002945974.1| hypothetical protein Vapar_4095 [Variovorax paradoxus S110]
 gi|239803641|gb|ACS20708.1| conserved hypothetical protein [Variovorax paradoxus S110]
          Length = 212

 Score =  304 bits (780), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 124/212 (58%), Positives = 147/212 (69%), Gaps = 2/212 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS+KEIF TLQGEGG AG  AVFCRF+GCNLW+GRE+DR +A CRFCDTDFVG  GT 
Sbjct: 1   MTYSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWTGREEDRATAVCRFCDTDFVGTDGTL 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++ N + LAD I  QW   + E R  VLTGGEPLLQVD  L+ AL+ R F IAVE+NG
Sbjct: 61  GGKFKNAELLADTIAAQWPAEDAEHRLVVLTGGEPLLQVDAALVDALHARRFRIAVESNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-DFERFSLQPMDGP 179
           T+  P+GIDW+C+SPKAG     + GQELKLV+ Q     +      +F    LQPMDGP
Sbjct: 121 TVAAPEGIDWLCISPKAGAPWVQQRGQELKLVWRQTEFDLDTMARTGEFTHRFLQPMDGP 180

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               NT L I+ C ++P WRLSVQTHK  GIR
Sbjct: 181 DRVANTELCIAECMRHPAWRLSVQTHKITGIR 212


>gi|326795520|ref|YP_004313340.1| radical SAM protein [Marinomonas mediterranea MMB-1]
 gi|326546284|gb|ADZ91504.1| Radical SAM domain protein [Marinomonas mediterranea MMB-1]
          Length = 216

 Score =  303 bits (777), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 114/216 (52%), Positives = 147/216 (68%), Gaps = 9/216 (4%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y++KE F +LQGEG HAGR A+FCRF+GCNLWSG+E+ RLSA C+FCDTDF G+ G  G
Sbjct: 1   MYNVKESFYSLQGEGAHAGRPAIFCRFTGCNLWSGKEKHRLSADCQFCDTDFNGVNGQNG 60

Query: 63  GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           GR+ + D+LA  I  QW  G    +Y V TGGEP LQ+D  LI A+   GF +A+ETNGT
Sbjct: 61  GRFKSADELAKHIANQWPQG-HGNKYVVFTGGEPALQLDQALISAVKSYGFMVAIETNGT 119

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD---- 177
           +  P  IDWICVSPK    L +  G ELK V+PQ N++P++Y G +FE F LQPMD    
Sbjct: 120 LRLPDNIDWICVSPKTTDPLVVNAGNELKFVYPQTNLNPKDYEGLEFEHFYLQPMDLSAV 179

Query: 178 --GPFLEENTNLA-ISYCFQNPKWRLSVQTHKFIGI 210
                +  +T  A + YC +NP WR+S+QTHK + I
Sbjct: 180 PKQNIIASDTQSATLKYCLENPLWRISLQTHKMLNI 215


>gi|87308581|ref|ZP_01090721.1| hypothetical protein DSM3645_14515 [Blastopirellula marina DSM
           3645]
 gi|87288673|gb|EAQ80567.1| hypothetical protein DSM3645_14515 [Blastopirellula marina DSM
           3645]
          Length = 211

 Score =  303 bits (776), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 120/211 (56%), Positives = 146/211 (69%), Gaps = 2/211 (0%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK Y +KEI+ TLQGEG  +GR AVFCRF+GCNLWSGREQDR SA C+FCDT FVG  G 
Sbjct: 1   MK-YFVKEIYYTLQGEGAKSGRPAVFCRFTGCNLWSGREQDRASAICQFCDTQFVGTDGP 59

Query: 61  KGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
            GG + +  +LA  +  +W       +  V TGGEPLLQ+D  +I+AL+  GFE+AVETN
Sbjct: 60  GGGVFRSALELAGAVAAKWPESWNANKMVVCTGGEPLLQLDEAVIEALHDEGFEVAVETN 119

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           GT  PP GIDWI VSPKA  +  ++ G ELKLVFPQ    P  Y   DF+ F LQPMDG 
Sbjct: 120 GTKIPPPGIDWISVSPKANAECILRAGDELKLVFPQPGGEPTKYENLDFDHFFLQPMDGL 179

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             E+NT LA  YC ++P+W LS+QTHK IG+
Sbjct: 180 SREQNTQLAAQYCLKHPQWELSIQTHKLIGL 210


>gi|163856911|ref|YP_001631210.1| hypothetical protein Bpet2600 [Bordetella petrii DSM 12804]
 gi|163260639|emb|CAP42941.1| conserved hypothetical protein [Bordetella petrii]
          Length = 391

 Score =  302 bits (774), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 119/209 (56%), Positives = 139/209 (66%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS KEIF TLQGEG  AGR AVFCRF+GCNLWSGRE DR  A C FCDTDFVG  G  
Sbjct: 182 MTYSTKEIFKTLQGEGAQAGRAAVFCRFAGCNLWSGREADRAGAVCTFCDTDFVGTDGPG 241

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           GG++                  + RY V TGGEPLLQ+D  L+QA++  GF +A+ETNGT
Sbjct: 242 GGKFASAAQLADAIAAAWGPGTQDRYVVFTGGEPLLQLDAALLQAVHGHGFTVAIETNGT 301

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           +  P GIDWICVSPK    + I+ G ELKLV+PQ    PE Y   DF+ F LQPMDGP  
Sbjct: 302 LPAPAGIDWICVSPKGSARVVIERGHELKLVYPQAEARPEAYAHLDFQHFFLQPMDGPAR 361

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             NT  A+ YC Q+P+WRLS+QTHK+IGI
Sbjct: 362 AANTQQAVQYCMQHPQWRLSLQTHKYIGI 390


>gi|329113419|ref|ZP_08242200.1| 7-carboxy-7-deazaguanine synthase-like protein [Acetobacter pomorum
           DM001]
 gi|326697244|gb|EGE48904.1| 7-carboxy-7-deazaguanine synthase-like protein [Acetobacter pomorum
           DM001]
          Length = 216

 Score =  301 bits (773), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 124/215 (57%), Positives = 148/215 (68%), Gaps = 6/215 (2%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS+KEIFLTLQGEGG AGR AVFCRF+GCNLWSGRE+DR +A C+FCDTDF+G  G  
Sbjct: 1   MTYSVKEIFLTLQGEGGQAGRAAVFCRFTGCNLWSGREEDRATATCQFCDTDFIGTDGIN 60

Query: 62  GGRY-NVDQLADLIEEQWI-----TGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
           GG++ N   LA  I   W            +  V TGGEPLLQ+D  LI A++ +GF IA
Sbjct: 61  GGKFENAADLAATIASFWPQPTQDVKATGQKLVVFTGGEPLLQLDTALINAMHAQGFTIA 120

Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
           VE+NGTI  P+GIDW+C+SPKAG +L  K G ELKLVFPQ  + P +    DF+ F LQP
Sbjct: 121 VESNGTIAAPKGIDWLCISPKAGAELVQKAGTELKLVFPQPGIDPASVENLDFQHFWLQP 180

Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           MDGP    NT  AI YC ++P W LS+QTHK IGI
Sbjct: 181 MDGPQQAANTQAAIEYCLEHPLWGLSLQTHKLIGI 215


>gi|226228044|ref|YP_002762150.1| hypothetical protein GAU_2638 [Gemmatimonas aurantiaca T-27]
 gi|226091235|dbj|BAH39680.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 212

 Score =  301 bits (772), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 117/210 (55%), Positives = 138/210 (65%), Gaps = 2/210 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE F TLQGEG +AGR AVFCRFSGCNLW+GRE DR  A C FCDTDFVG+    G 
Sbjct: 3   YTVKECFYTLQGEGVNAGRAAVFCRFSGCNLWTGREADRHKATCTFCDTDFVGVGPDGGK 62

Query: 64  RYNVDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
                 LA  ++ +W          + V TGGEPLLQ+D   I AL+  GFEIAVETNGT
Sbjct: 63  FATAAALAAFVKSRWPVDAPGSARPFVVCTGGEPLLQLDEAAIDALHAEGFEIAVETNGT 122

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
              P G+DWICVSPKA   + +  G ELKLVFPQ    PE +   +F  F LQPMD P  
Sbjct: 123 QPAPAGLDWICVSPKADAPVVLTRGDELKLVFPQEQARPERFASLEFAHFLLQPMDDPQA 182

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            ENT  A++YC  +P+WRLSVQTHK +GIR
Sbjct: 183 AENTRAALAYCLAHPQWRLSVQTHKVLGIR 212


>gi|258542252|ref|YP_003187685.1| hypothetical protein APA01_11580 [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633330|dbj|BAH99305.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01]
 gi|256636389|dbj|BAI02358.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03]
 gi|256639442|dbj|BAI05404.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07]
 gi|256642498|dbj|BAI08453.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22]
 gi|256645553|dbj|BAI11501.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26]
 gi|256648606|dbj|BAI14547.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32]
 gi|256651659|dbj|BAI17593.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654650|dbj|BAI20577.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12]
          Length = 216

 Score =  301 bits (772), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 124/215 (57%), Positives = 146/215 (67%), Gaps = 6/215 (2%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS+KEIFLTLQGEGG AGR AVFCRF+GCNLWSGRE DR  A C+FCDTDF+G  G  
Sbjct: 1   MTYSVKEIFLTLQGEGGQAGRAAVFCRFTGCNLWSGREADRDKAICQFCDTDFIGTDGIN 60

Query: 62  GGRY-NVDQLADLIEEQWI-----TGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
           GG++ N  +LA  I   W      T     +  V TGGEPLLQ+D  LI A++ +GF IA
Sbjct: 61  GGKFENAAELAATIASFWPQPTEDTKATGQKLVVFTGGEPLLQLDTALIDAMHAQGFSIA 120

Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
           VE+NGT+  P+GIDW+C+SPKAG +L  K G ELKLVFPQ  + P      DF+ F LQP
Sbjct: 121 VESNGTVMAPEGIDWLCISPKAGAELVQKAGTELKLVFPQPGIDPAALENLDFQHFWLQP 180

Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           MDGP    NT  AI YC  +P W LS+QTHK IGI
Sbjct: 181 MDGPQQAVNTQAAIEYCLAHPLWGLSLQTHKLIGI 215


>gi|188580423|ref|YP_001923868.1| radical SAM domain protein [Methylobacterium populi BJ001]
 gi|179343921|gb|ACB79333.1| Radical SAM domain protein [Methylobacterium populi BJ001]
          Length = 210

 Score =  300 bits (770), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 121/207 (58%), Positives = 142/207 (68%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE+F TLQGEG  AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDF+G+ G  GG
Sbjct: 3   YAVKELFHTLQGEGAQAGRAAVFCRFAGCNLWSGREEDRAEAACRFCDTDFIGMDGEGGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R++  +           G K  RY V TGGEPLLQ+D  LI A++ RGFE+AVETNGT+ 
Sbjct: 63  RFSDAEALAEAIAATWGGGKANRYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGTLP 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
            P GIDWICVSPKAG  L    G ELKLVFPQ    PE +    F    LQPMDGP    
Sbjct: 123 APPGIDWICVSPKAGNPLAQTSGDELKLVFPQAEALPERFADLPFRHHFLQPMDGPEAAA 182

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
           NT  A++YC  + +WRLS+QTHK IGI
Sbjct: 183 NTAAAVAYCRSDARWRLSLQTHKIIGI 209


>gi|46203559|ref|ZP_00209018.1| COG0602: Organic radical activating enzymes [Magnetospirillum
           magnetotacticum MS-1]
          Length = 229

 Score =  300 bits (769), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 120/207 (57%), Positives = 141/207 (68%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE+F TLQGEG  AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG+ G  GG
Sbjct: 22  YAVKELFHTLQGEGAQAGRAAVFCRFAGCNLWSGREEDRAGAACRFCDTDFVGLDGEGGG 81

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R+   +           G    RY V TGGEPLLQ+D  LI A++ RGFE+AVETNGT+ 
Sbjct: 82  RFASAEALAGAIAATWAGGAAHRYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGTLA 141

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
            P GIDWICVSPKAG  L    G ELKLV+PQ   +PE +    F    LQPMDGP    
Sbjct: 142 APPGIDWICVSPKAGNALIQTSGDELKLVYPQAEAAPELFADLPFRHRFLQPMDGPEAAA 201

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
           NT  A++YC  + +WRLS+QTHK IGI
Sbjct: 202 NTAAAVAYCRADARWRLSLQTHKIIGI 228


>gi|311696706|gb|ADP99579.1| organic radical activating enzyme [marine bacterium HP15]
          Length = 218

 Score =  300 bits (768), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 113/218 (51%), Positives = 141/218 (64%), Gaps = 11/218 (5%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y +KE F TLQGEG  AGR AVFCRFS CNLW+GRE+DR +A C FCDTDFVG  G  G
Sbjct: 1   MYRVKEAFYTLQGEGAQAGRAAVFCRFSKCNLWTGREKDRATAVCNFCDTDFVGTDGQNG 60

Query: 63  GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           GR+   ++LA  I   W        Y V TGGEPLLQ+D PLI+AL++ GFE+ VETNGT
Sbjct: 61  GRFETPEELARHIRNLWPEA-PGKPYVVCTGGEPLLQLDAPLIEALHREGFEVGVETNGT 119

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           +  P+GIDW+CVSPKA   + ++   ELKLV+PQ    PE ++G     + L PM  P +
Sbjct: 120 LPAPEGIDWLCVSPKADAPVVLEACDELKLVYPQPLAMPERFLGIRASHYFLSPMASPSI 179

Query: 182 EE---------NTNLAISYCFQNPKWRLSVQTHKFIGI 210
            E         NT  A  YC  +P+WRL++Q HK IGI
Sbjct: 180 PETAVDEIKQSNTRRATDYCLAHPQWRLTLQMHKIIGI 217


>gi|307545033|ref|YP_003897512.1| hypothetical protein HELO_2443 [Halomonas elongata DSM 2581]
 gi|307217057|emb|CBV42327.1| hypothetical protein HELO_2443 [Halomonas elongata DSM 2581]
          Length = 214

 Score =  299 bits (767), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 116/213 (54%), Positives = 140/213 (65%), Gaps = 5/213 (2%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +YS+KE F +LQGEGG AGR +VFCRF+GCNLWSGRE DR+SA CRFCDTDF G  G  G
Sbjct: 1   MYSVKEAFYSLQGEGGQAGRASVFCRFAGCNLWSGREADRVSAACRFCDTDFRGTDGQNG 60

Query: 63  GRY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GR+ + + LA+ +   W       R   + TGGEPLLQ+D  LI A++ R F++AVETNG
Sbjct: 61  GRFADAETLAEHLVGLWEGAPDGSRPQVIFTGGEPLLQLDDALIAAMHDREFDVAVETNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T+  P GIDW+CVSPK    L    G ELKLV PQ    PE + G DF  F LQPMD   
Sbjct: 121 TLAAPAGIDWLCVSPKGDVPLVQTRGDELKLVHPQPEAPPERFTGLDFRHFFLQPMDTSP 180

Query: 181 LEE---NTNLAISYCFQNPKWRLSVQTHKFIGI 210
           L E        ++YC  NP+WRLS+QTHK  GI
Sbjct: 181 LGETRDTMAATVAYCLANPRWRLSLQTHKIAGI 213


>gi|83309346|ref|YP_419610.1| organic radical activating protein [Magnetospirillum magneticum
           AMB-1]
 gi|82944187|dbj|BAE49051.1| Organic radical activating enzyme [Magnetospirillum magneticum
           AMB-1]
          Length = 202

 Score =  299 bits (767), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 116/208 (55%), Positives = 146/208 (70%), Gaps = 10/208 (4%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y+++EIF +LQGEG  AGR AVF RF+GCNLWSGRE DR +A CRFCDTDFVG     G 
Sbjct: 3   YTVREIFHSLQGEGVQAGRPAVFLRFAGCNLWSGREADRETATCRFCDTDFVG-----GE 57

Query: 64  RYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +Y   Q LA+ ++          RY V+TGGEP LQ+D  L++AL+  GFE+A+ETNGT+
Sbjct: 58  KYPDAQGLAEAVKAVGGA----TRYVVVTGGEPGLQLDGALVEALHGLGFEVAIETNGTV 113

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           E P G+DW+CVSPKAG  LK+  G ELKLVFPQ    P ++   DF  F LQPMDGP  +
Sbjct: 114 ELPSGLDWVCVSPKAGTTLKVTRGDELKLVFPQAGAMPGDFEHLDFAYFLLQPMDGPERD 173

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +T  AI +C  +P+WRLS+QTHK +GI
Sbjct: 174 AHTRAAIGHCLTHPRWRLSLQTHKIVGI 201


>gi|145589599|ref|YP_001156196.1| radical SAM domain-containing protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048005|gb|ABP34632.1| Radical SAM domain protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 217

 Score =  299 bits (766), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 119/217 (54%), Positives = 154/217 (70%), Gaps = 8/217 (3%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y++KEIF TLQGEG HAGR AVFCRF+GCNLWSGRE+DR +A C+FCDTDFVG  G  G
Sbjct: 1   MYTVKEIFPTLQGEGAHAGRAAVFCRFAGCNLWSGREEDRATAICQFCDTDFVGSDGLGG 60

Query: 63  GRY-NVDQLADLIEEQW--ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           G++   + LA+ IE  W   +   + RY V TGGEPLLQ+D  LI+ L+K+GFE+A+ETN
Sbjct: 61  GKFETANDLANAIELAWKSTSAGPQQRYVVFTGGEPLLQLDEVLIEVLHKKGFEVAIETN 120

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-----VNVSPENYIGFDFERFSLQ 174
           GT++ P+G+DW+CVSPKAG +L +    E+KLV PQ     +      +   D+    LQ
Sbjct: 121 GTLKVPKGVDWVCVSPKAGAELIVLQANEMKLVVPQNGHESLEQLMGRFEKMDYRNRFLQ 180

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           PMDGP L+ NT LA+  C + P WRLS+Q+HK IGIR
Sbjct: 181 PMDGPNLKSNTELAVGLCQKRPLWRLSIQSHKLIGIR 217


>gi|126665591|ref|ZP_01736573.1| Organic radical activating enzyme [Marinobacter sp. ELB17]
 gi|126630219|gb|EBA00835.1| Organic radical activating enzyme [Marinobacter sp. ELB17]
          Length = 218

 Score =  298 bits (765), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 115/218 (52%), Positives = 138/218 (63%), Gaps = 11/218 (5%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y +KE F TLQGEG  AGR AVFCRFS CNLW+GRE+DR +A C FCDTDFVG  G  G
Sbjct: 1   MYRVKEAFYTLQGEGAQAGRAAVFCRFSKCNLWTGREKDRATAVCDFCDTDFVGTDGQNG 60

Query: 63  GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           G +   + LA  I   W        Y V TGGEPLLQ+D PLI AL++ GFEI VETNGT
Sbjct: 61  GVFATPEALAAHIAGLWPVA-PGKPYVVCTGGEPLLQLDSPLINALHQAGFEIGVETNGT 119

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           +  P GIDW+CVSPKA   + I+   ELKLV+PQ+   PE ++    + F L PM  P +
Sbjct: 120 LPAPAGIDWLCVSPKADAPVVIERCNELKLVYPQLKAMPERFLHIQADHFFLSPMASPSV 179

Query: 182 EE---------NTNLAISYCFQNPKWRLSVQTHKFIGI 210
            E         NT  A  YC  NP+WRL++Q HK IGI
Sbjct: 180 PETSTDVIKQSNTRRATDYCLANPRWRLTLQMHKIIGI 217


>gi|307293826|ref|ZP_07573670.1| Radical SAM domain protein [Sphingobium chlorophenolicum L-1]
 gi|306879977|gb|EFN11194.1| Radical SAM domain protein [Sphingobium chlorophenolicum L-1]
          Length = 215

 Score =  298 bits (764), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 113/214 (52%), Positives = 148/214 (69%), Gaps = 7/214 (3%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE+FLTLQGEG HAGR AVF RF+GCNLWSGREQDR +A C+FCDTDFVG  G  GG
Sbjct: 3   YAVKELFLTLQGEGVHAGRRAVFLRFAGCNLWSGREQDRATAICQFCDTDFVGTDGDGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++ + D LA+     W  G  EGRY VLTGGEP+LQ+D  L+ AL+ RGF IAVE+NGT+
Sbjct: 63  KFADADSLAEAALALWGEGA-EGRYIVLTGGEPMLQIDDALVDALHARGFAIAVESNGTL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----VSPENYIGFDFERFSLQPMD 177
               G+DW+C+SPKAG ++  + G ELKLV+PQ          E+  G+ F+   +QP+D
Sbjct: 122 PAHPGLDWVCISPKAGSEVVQRSGNELKLVWPQPGQGHGIADVEDMEGWAFDHLLVQPLD 181

Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            P    N   A+      P+WRLS+Q+HK++G+R
Sbjct: 182 DPDAARNAQAAVDLVLARPRWRLSLQSHKYLGLR 215


>gi|332188914|ref|ZP_08390617.1| hypothetical protein SUS17_4029 [Sphingomonas sp. S17]
 gi|332011054|gb|EGI53156.1| hypothetical protein SUS17_4029 [Sphingomonas sp. S17]
          Length = 210

 Score =  298 bits (763), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 112/208 (53%), Positives = 143/208 (68%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE+FLTLQGEG  AGR AVF RF+GCNLWSGREQDR SA CRFCDTDFVG+ G  GG
Sbjct: 3   YAVKEMFLTLQGEGVQAGRRAVFVRFAGCNLWSGREQDRASAICRFCDTDFVGVDGLGGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R+          E +   E+  R+ VLTGGEP+LQVD  L+ AL+  GF IA+E+NGTI 
Sbjct: 63  RFADAGALVAAVEGFWGPERAERFVVLTGGEPMLQVDDALVDALHDAGFFIAIESNGTIA 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
               +DW+C+SPKAG ++  + GQELKLV+PQ  + P    G+DF    LQP+D P  E 
Sbjct: 123 AHPRLDWVCISPKAGSEVVQRSGQELKLVWPQAGIDPAEVEGWDFANHLLQPLDDPRAEA 182

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           N    I+   + P+WRL++QTHK +G+R
Sbjct: 183 NREACIAMVMERPRWRLTLQTHKMLGLR 210


>gi|152968324|ref|YP_001364108.1| hypothetical protein Krad_4381 [Kineococcus radiotolerans SRS30216]
 gi|151362841|gb|ABS05844.1| conserved hypothetical protein [Kineococcus radiotolerans SRS30216]
          Length = 237

 Score =  297 bits (762), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 118/236 (50%), Positives = 143/236 (60%), Gaps = 27/236 (11%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y +KEIF TLQGEG HAGR AVFCRFS CNLW+GRE+DR  A C FCDTDFVG  G  
Sbjct: 1   MTYLLKEIFYTLQGEGTHAGRPAVFCRFSRCNLWTGREKDRARAICTFCDTDFVGTDGVG 60

Query: 62  GGRYNVDQL---------------------ADLIEEQWITGEKEGRY------CVLTGGE 94
           GGR+                          + +  E   +      +       V TGGE
Sbjct: 61  GGRFATADDLAAAVDASWPAAGLTDDFTDGSAITAESDSSAHSHAPHGAQRKFVVCTGGE 120

Query: 95  PLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
           PLLQ+D   +QAL++RGFE+AVETNGT  PP GIDW+CVSPK G DL +  G ELKLV+P
Sbjct: 121 PLLQLDDAAVQALHQRGFEVAVETNGTRTPPPGIDWLCVSPKIGADLVVSRGDELKLVYP 180

Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           Q    P  +   DF  F LQPMDGP ++ +T  AI YC  +P+W LS+QTHK++GI
Sbjct: 181 QAGGDPAQFAELDFTSFRLQPMDGPDVQAHTRAAIDYCLTHPQWSLSMQTHKYLGI 236


>gi|120553050|ref|YP_957401.1| organic radical activating enzyme [Marinobacter aquaeolei VT8]
 gi|120322899|gb|ABM17214.1| organic radical activating enzyme [Marinobacter aquaeolei VT8]
          Length = 218

 Score =  297 bits (762), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 111/218 (50%), Positives = 138/218 (63%), Gaps = 11/218 (5%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y +KE F TLQGEG  AGR AVFCRFS CNLW+GRE+DR +A C FCDTDFVG  G  G
Sbjct: 1   MYRVKEAFYTLQGEGAQAGRAAVFCRFSKCNLWTGREKDRANAVCNFCDTDFVGTDGQNG 60

Query: 63  GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           GR+   + LA  I   W        Y V TGGEPLLQ+D PLI+A ++ GFE+ VETNGT
Sbjct: 61  GRFDTPEALAAHIRSLWPDAPGRP-YVVCTGGEPLLQLDEPLIRAFHRAGFEVGVETNGT 119

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           +  P+GIDW+CVSPKA  ++ I    ELKLV+PQ    PE ++      + L PM  P +
Sbjct: 120 LPAPEGIDWLCVSPKADAEVVIAECDELKLVYPQPLAPPERFLHIRARHYFLSPMASPSV 179

Query: 182 EE---------NTNLAISYCFQNPKWRLSVQTHKFIGI 210
            E         NT  A  YC  +P+WRL++Q HK +GI
Sbjct: 180 PEGGPDAIKQSNTRKATDYCLAHPQWRLTLQMHKILGI 217


>gi|329851462|ref|ZP_08266219.1| hypothetical protein ABI_43030 [Asticcacaulis biprosthecum C19]
 gi|328840308|gb|EGF89880.1| hypothetical protein ABI_43030 [Asticcacaulis biprosthecum C19]
          Length = 210

 Score =  296 bits (760), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 120/210 (57%), Positives = 144/210 (68%), Gaps = 1/210 (0%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +YS KEIFLTLQGEGG AGRV VF RF+GCNLWSGREQDR +A C FCDTDFVG  G  G
Sbjct: 1   MYSFKEIFLTLQGEGGQAGRVNVFARFAGCNLWSGREQDRATAACDFCDTDFVGTDGENG 60

Query: 63  GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           GR+     +   ++  W  G   G+  V TGGEPLLQ+D  LI A+   G+ IAVETNGT
Sbjct: 61  GRFPTPADVVAALDAVWGEGRAAGKAVVFTGGEPLLQLDSDLIAAVKAAGYFIAVETNGT 120

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           ++ P GIDW+CVSPK    L    GQELKLV+PQ NV P +++   FERF LQP D P  
Sbjct: 121 LKAPAGIDWVCVSPKGQNRLHQTSGQELKLVWPQENVDPSDFLEMQFERFYLQPKDNPRQ 180

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             NT   I YC  +P+WR+SVQTHK +G++
Sbjct: 181 AANTQAVIDYCLLHPQWRMSVQTHKLVGLK 210


>gi|114798300|ref|YP_759262.1| hypothetical protein HNE_0532 [Hyphomonas neptunium ATCC 15444]
 gi|114738474|gb|ABI76599.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444]
          Length = 215

 Score =  295 bits (756), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 119/214 (55%), Positives = 137/214 (64%), Gaps = 5/214 (2%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS+KE F TLQGEG H GR AVF RF+GCNLWSG E+DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYSVKEAFYTLQGEGAHTGRAAVFLRFAGCNLWSGLERDREKAVCRFCDTDFVGTNGEG 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
           GG++     LA  IE  W      G   Y V TGGEPL+Q+D PLI AL++ GFEIA+ET
Sbjct: 61  GGKFREPGLLAAHIESIWQANASPGGRPYVVCTGGEPLMQLDEPLIGALHEAGFEIAIET 120

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFSLQPM 176
           NGT+  P  IDWICVSPKA   L  K G ELKLV+PQ      PE +   DFE F LQP 
Sbjct: 121 NGTLPAPASIDWICVSPKANAPLAQKSGNELKLVYPQTEPEAQPECFETLDFEHFFLQPR 180

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           D      +     +YC +NPKWRLS+QTHK  G+
Sbjct: 181 DDGPSVSHVAAVANYCLKNPKWRLSLQTHKLTGL 214


>gi|294013047|ref|YP_003546507.1| putative organic radical activating enzyme [Sphingobium japonicum
           UT26S]
 gi|292676377|dbj|BAI97895.1| putative organic radical activating enzyme [Sphingobium japonicum
           UT26S]
          Length = 215

 Score =  295 bits (755), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 109/213 (51%), Positives = 145/213 (68%), Gaps = 5/213 (2%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE+FLTLQGEG HAGR AVF RF+GCNLW+GREQDR SA CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEMFLTLQGEGVHAGRRAVFLRFAGCNLWTGREQDRASAVCRFCDTDFVGTDGDGGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R+                 ++GRY VLTGGEP+LQVD  L+ AL+ RGF IA+E+NGT+ 
Sbjct: 63  RFADADGLADAALALWGEGRDGRYIVLTGGEPMLQVDDALVDALHARGFAIAIESNGTLP 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----VSPENYIGFDFERFSLQPMDG 178
              G+DW+C+SPKAG ++  + G ELKLV+PQ          E+  G+ F+ + +QP+D 
Sbjct: 123 AHPGLDWVCISPKAGSEVVQRSGNELKLVWPQPGQGHSLADVEDMEGWAFDHWLVQPLDD 182

Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           P   +N   A+    + P+WRLS+Q+HK++G+R
Sbjct: 183 PKAADNARAAVELVMERPRWRLSLQSHKYLGLR 215


>gi|88800853|ref|ZP_01116408.1| Organic radical activating enzyme [Reinekea sp. MED297]
 gi|88776426|gb|EAR07646.1| Organic radical activating enzyme [Reinekea sp. MED297]
          Length = 217

 Score =  294 bits (754), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 105/217 (48%), Positives = 140/217 (64%), Gaps = 9/217 (4%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS+KE+F TLQGEG H GR AVFCRFSGCNLW+GRE+DR ++ CRFCDTDFVG  G  
Sbjct: 1   MTYSVKEMFYTLQGEGFHTGRPAVFCRFSGCNLWNGREKDRATSICRFCDTDFVGTDGQN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++    +LA  I + W   ++  R+ V TGGEP LQ+D  LI AL+  GFE AVE+NG
Sbjct: 61  GGKFREARELAQRIADFWP-ADQAHRFVVFTGGEPALQLDETLIAALHDVGFECAVESNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD--- 177
           T+  P  +DW+C+SPK   ++ I+   ELKLVFPQ +  PE +     +   L P++   
Sbjct: 120 TLPLPPSLDWVCISPKGSAEVVIEACDELKLVFPQADAQPERFSHIHAQHRFLSPLNDWT 179

Query: 178 ----GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                P    NT   + YC ++P+WRL++QTHK + I
Sbjct: 180 QAQLSPAQNNNTQACVQYCLEHPQWRLTLQTHKVLNI 216


>gi|149377359|ref|ZP_01895104.1| Organic radical activating enzyme [Marinobacter algicola DG893]
 gi|149358371|gb|EDM46848.1| Organic radical activating enzyme [Marinobacter algicola DG893]
          Length = 218

 Score =  294 bits (754), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 108/218 (49%), Positives = 134/218 (61%), Gaps = 11/218 (5%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y +KE F TLQGEG  AGR AVFCRFS CNLW+GRE+DR +A C FCDTDFVG  G  G
Sbjct: 1   MYRVKEAFYTLQGEGAQAGRAAVFCRFSKCNLWTGREKDRANAVCSFCDTDFVGTDGQNG 60

Query: 63  GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           G++   D LA  I   W        Y V TGGEPLLQ+D  L+ A ++ GFE+ VETNGT
Sbjct: 61  GQFETADALAAHIRRLWPDAPGRP-YVVCTGGEPLLQLDDQLVDAFHRAGFEVGVETNGT 119

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           +  P GIDW+CVSPKA   + ++   ELK+V+PQ    PE +       + L PM  P +
Sbjct: 120 LPAPSGIDWLCVSPKADAPVVLRQCDELKVVYPQPLAMPERFTDIQASHYFLSPMASPTV 179

Query: 182 EE---------NTNLAISYCFQNPKWRLSVQTHKFIGI 210
            E         NT  A  YC  +P+WRL++Q HK IGI
Sbjct: 180 SEGEPDPIKQSNTRKATDYCLTHPRWRLTLQMHKIIGI 217


>gi|92114161|ref|YP_574089.1| hypothetical protein Csal_2039 [Chromohalobacter salexigens DSM
           3043]
 gi|91797251|gb|ABE59390.1| conserved hypothetical protein [Chromohalobacter salexigens DSM
           3043]
          Length = 215

 Score =  294 bits (753), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 116/214 (54%), Positives = 144/214 (67%), Gaps = 6/214 (2%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +YS+KE F TLQGEG  AGR +VFCRF+GCNLWSGRE+DR  ++CRFCDTDFVG  G  G
Sbjct: 1   MYSVKEAFYTLQGEGARAGRASVFCRFTGCNLWSGRERDRAQSRCRFCDTDFVGTDGQNG 60

Query: 63  GRY-NVDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           GR+ +   LA  +   W   +      Y V TGGEPLLQ+D  LI A+   GFE+AVETN
Sbjct: 61  GRFADAHALATHLHRLWPGTDDTAATPYVVFTGGEPLLQLDTALITAMRAHGFEVAVETN 120

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD-G 178
           GT+ PP GIDW+CVSPK    L+I  G ELKLV+PQ +  P N+   DF  F LQPMD  
Sbjct: 121 GTLTPPDGIDWLCVSPKGDAPLRITQGDELKLVYPQDDAPPANFTHLDFAHFFLQPMDLA 180

Query: 179 PFLEENTNL--AISYCFQNPKWRLSVQTHKFIGI 210
           P   + T +   ++YC  +P+WRL++QTHK  GI
Sbjct: 181 PRGGQGTTMTDTVAYCLDHPQWRLALQTHKIAGI 214


>gi|241761735|ref|ZP_04759822.1| organic radical activating enzymes-like protein [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241374043|gb|EER63576.1| organic radical activating enzymes-like protein [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 217

 Score =  293 bits (751), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 111/215 (51%), Positives = 144/215 (66%), Gaps = 5/215 (2%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           + Y++KE FLTLQGEG  AGR AVF RF+GCNLW+GRE DR  A CRFCDTDFVGI G  
Sbjct: 3   RHYAVKESFLTLQGEGIQAGRRAVFIRFAGCNLWNGREDDREQATCRFCDTDFVGIDGEN 62

Query: 62  GGRYNVDQLADLIEEQWITG-----EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
           GGR+  ++LA+     W        +    + VLTGGEPLLQVD  L+ AL  + FEIA+
Sbjct: 63  GGRFTAEELAEQAIRLWKEALESRYQYVRPFVVLTGGEPLLQVDEALLLALKNQAFEIAI 122

Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
           ETNGT   P  IDW+C+SPKAG  + ++ G E+KLV+PQ  +  E     DF+ + +QPM
Sbjct: 123 ETNGTQPVPSAIDWVCMSPKAGSQIILEKGNEIKLVWPQKGIDIEALEKLDFDHYLIQPM 182

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           D  + +EN   AI++  Q P WRLS+Q+HK IG++
Sbjct: 183 DDEYQKENIQKAIAFVMQRPLWRLSIQSHKLIGVK 217


>gi|317486302|ref|ZP_07945134.1| radical SAM domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316922472|gb|EFV43726.1| radical SAM domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 218

 Score =  292 bits (749), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 109/213 (51%), Positives = 135/213 (63%), Gaps = 7/213 (3%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +KEIF TLQGEG  AGR AVFCRFSGCNLWSGR +DR +A+CRFCDTDFVG     G 
Sbjct: 8   YRVKEIFYTLQGEGAQAGRPAVFCRFSGCNLWSGRPEDRATAKCRFCDTDFVGADA--GV 65

Query: 64  RYNVDQLADLIEEQWITGEKEG-----RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
               ++LA  I   +     +       Y V TGGEP LQ+   LI  L+  GFE+ VE+
Sbjct: 66  FATAEELAQTIAATFPVLAPQAYGGRKPYIVFTGGEPALQLTRELIDRLHALGFELGVES 125

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
           NGT+  P+G+DWI VSPK    L    G ELKLV+PQ   SPE++   DF  F LQP D 
Sbjct: 126 NGTLPLPEGLDWITVSPKGSNPLATTSGHELKLVWPQQGCSPEDFEDLDFRHFLLQPCDD 185

Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           P  + NT   I+YC  +P+W L +QTHK++G+R
Sbjct: 186 PRNKANTRECIAYCLLHPRWSLGLQTHKWVGVR 218


>gi|149926775|ref|ZP_01915035.1| hypothetical protein LMED105_08825 [Limnobacter sp. MED105]
 gi|149824704|gb|EDM83920.1| hypothetical protein LMED105_08825 [Limnobacter sp. MED105]
          Length = 216

 Score =  292 bits (748), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 109/214 (50%), Positives = 139/214 (64%), Gaps = 5/214 (2%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y++KE+F TLQGEG  AGR AVFCRF+GCNLW+GRE+DR +A C+FCDTDFVG  G 
Sbjct: 1   MATYTVKEMFYTLQGEGAQAGRAAVFCRFAGCNLWTGREEDRATAVCKFCDTDFVGTDGV 60

Query: 61  KGGRY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
            GG++ +   LA  I + +  G    + Y V TGGEP LQ+D  LI A++ +GFEIA+ET
Sbjct: 61  GGGKFKDAVALAQAIADTYQGGLGTAKPYVVFTGGEPTLQLDSALIDAVHAQGFEIAIET 120

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
           NGT+  P+G+DWICVSPK G +L    G ELK+V PQ+           F+ + +Q MD 
Sbjct: 121 NGTLPVPEGVDWICVSPKFGSELVQTRGHELKVVVPQLGQDLNALGQLQFDHYFVQAMDD 180

Query: 179 PF---LEENTNLAISYCFQNPKWRLSVQTHKFIG 209
                  +N   AI  C   P+WRLSVQTHK IG
Sbjct: 181 TDPAKKAKNMQAAIQTCLNKPQWRLSVQTHKVIG 214


>gi|56552191|ref|YP_163030.1| organic radical activating-like protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56543765|gb|AAV89919.1| organic radical activating-like protein [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 217

 Score =  292 bits (748), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 111/215 (51%), Positives = 144/215 (66%), Gaps = 5/215 (2%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           + Y++KE FLTLQGEG  AGR AVF RF+GCNLW+GRE DR  A CRFCDTDFVGI G  
Sbjct: 3   RHYAVKESFLTLQGEGIQAGRRAVFIRFAGCNLWNGREDDREQATCRFCDTDFVGIDGEN 62

Query: 62  GGRYNVDQLADLIEEQWITG-----EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
           GGR+  ++LA+     W        +    + VLTGGEPLLQVD  L+ AL  + FEIA+
Sbjct: 63  GGRFTAEELAEQAIRLWKEAIESRYQSVRPFVVLTGGEPLLQVDEALLLALKNQAFEIAI 122

Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
           ETNGT   P  IDW+C+SPKAG  + ++ G E+KLV+PQ  +  E     DF+ + +QPM
Sbjct: 123 ETNGTQPVPSAIDWVCMSPKAGSQIILEKGNEIKLVWPQKGIDIEALEKLDFDHYLIQPM 182

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           D  + +EN   AI++  Q P WRLS+Q+HK IG++
Sbjct: 183 DDEYQKENIQKAIAFVMQRPLWRLSIQSHKLIGVK 217


>gi|260752296|ref|YP_003225189.1| hypothetical protein Za10_0051 [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258551659|gb|ACV74605.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 217

 Score =  292 bits (748), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 111/215 (51%), Positives = 144/215 (66%), Gaps = 5/215 (2%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           + Y++KE FLTLQGEG  AGR AVF RF+GCNLW+GRE DR  A CRFCDTDFVGI G  
Sbjct: 3   RHYAVKESFLTLQGEGIQAGRRAVFIRFAGCNLWNGREDDREQATCRFCDTDFVGIDGEN 62

Query: 62  GGRYNVDQLADLIEEQWITG-----EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
           GGR+  ++LA+     W        +    + VLTGGEPLLQVD  L+ AL  + FEIA+
Sbjct: 63  GGRFTAEELAEQAIRLWKEAIESRYQSVRPFVVLTGGEPLLQVDEALLLALKNQAFEIAI 122

Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
           ETNGT   P  IDW+C+SPKAG  + ++ G E+KLV+PQ  +  E     DF+ + +QPM
Sbjct: 123 ETNGTQPAPSAIDWVCMSPKAGSQIILEKGNEIKLVWPQKGIDIEALEKLDFDHYLIQPM 182

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           D  + +EN   AI++  Q P WRLS+Q+HK IG++
Sbjct: 183 DDEYQKENIQKAIAFVMQRPLWRLSIQSHKLIGVK 217


>gi|241766442|ref|ZP_04764315.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
 gi|241363364|gb|EER58879.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
          Length = 211

 Score =  291 bits (746), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 115/211 (54%), Positives = 134/211 (63%), Gaps = 1/211 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS+KEIF TLQGEGG AG  AVFCRF+GCNLW+GREQDR  A C+FCDTDFVG  GT 
Sbjct: 1   MTYSVKEIFYTLQGEGGQAGTPAVFCRFAGCNLWTGREQDRAQAICQFCDTDFVGTDGTL 60

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           GG++                    R  VLTGGEPLLQVD  LI AL+ + F IAVE+NGT
Sbjct: 61  GGKFETAAALAQSIAAQWPAGAGHRLVVLTGGEPLLQVDSELIAALHAQQFRIAVESNGT 120

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-DFERFSLQPMDGPF 180
           +  P+GIDW+C+SPKAG     + GQELKLV+PQ             F    LQPMDGP 
Sbjct: 121 VAAPEGIDWLCISPKAGAPFVQRSGQELKLVWPQPGFDLGALERETHFTHRFLQPMDGPL 180

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             +NT   I+ C  +P WRLS+QTHK  GIR
Sbjct: 181 QRQNTAACIAACLAHPAWRLSLQTHKLTGIR 211


>gi|152996126|ref|YP_001340961.1| hypothetical protein Mmwyl1_2104 [Marinomonas sp. MWYL1]
 gi|150837050|gb|ABR71026.1| conserved hypothetical protein [Marinomonas sp. MWYL1]
          Length = 216

 Score =  291 bits (745), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 108/216 (50%), Positives = 140/216 (64%), Gaps = 9/216 (4%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +YSIKE F +LQGEG HAGR A+FCRF+GCNLWSG E+ R +++C+FCDTDF+G  G  G
Sbjct: 1   MYSIKEAFYSLQGEGAHAGRPALFCRFTGCNLWSGSEKTRATSECQFCDTDFIGTNGQHG 60

Query: 63  GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           G++    QL   ++  W  G+   +Y V TGGEP LQ+D  +I  +   G+ IA+ETNGT
Sbjct: 61  GKFKTAGQLRTHLDALWPVGQ-GHKYVVFTGGEPALQLDNAIISEMKLYGYTIAIETNGT 119

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           I  P GIDWICVSPK    L +  G ELKLV+PQ ++SPE +   DF  F LQPMD   L
Sbjct: 120 IALPDGIDWICVSPKTNKPLVVNKGDELKLVYPQSHLSPELFEALDFTNFYLQPMDQSHL 179

Query: 182 E-------ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                   +     + YC  +P+WRLS+QTHK + I
Sbjct: 180 TAEQIPLLDTQQATLHYCLSHPRWRLSLQTHKMLNI 215


>gi|226940051|ref|YP_002795124.1| Organic radical activating enzyme [Laribacter hongkongensis HLHK9]
 gi|226714977|gb|ACO74115.1| Organic radical activating enzyme [Laribacter hongkongensis HLHK9]
          Length = 209

 Score =  290 bits (742), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 117/210 (55%), Positives = 137/210 (65%), Gaps = 1/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG H+GR AVFCRF+GCNLWSGRE DR  A C+FCDTDFVG     
Sbjct: 1   MTYTVKEIFHTLQGEGVHSGRAAVFCRFTGCNLWSGRETDRAQATCQFCDTDFVGTGPDG 60

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           G      +LA  I + W  G     Y V TGGEPLLQ+D  LI+A++ RGFE+ VETNGT
Sbjct: 61  GKFACARELAGRIADSW-AGTGGTPYVVFTGGEPLLQLDEELIEAMHARGFEVGVETNGT 119

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
           I  P GIDW+CVSPKAG     K G ELKLV+PQ  + PE      F R+ LQPMDGP  
Sbjct: 120 IPAPPGIDWLCVSPKAGSGWVQKQGDELKLVYPQPGLLPETVELTGFSRYWLQPMDGPEQ 179

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             +   AI +C  +P W LS+Q HK  GIR
Sbjct: 180 TMHIKAAIGFCLLHPDWHLSLQNHKLAGIR 209


>gi|78485139|ref|YP_391064.1| hypothetical protein Tcr_0794 [Thiomicrospira crunogena XCL-2]
 gi|78363425|gb|ABB41390.1| conserved hypothetical protein [Thiomicrospira crunogena XCL-2]
          Length = 218

 Score =  288 bits (737), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 109/215 (50%), Positives = 142/215 (66%), Gaps = 8/215 (3%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y IKE F +LQGEG H+GR A+FCRF+ CNLW+GRE DR +A C+FCDTDF+G  G  GG
Sbjct: 3   YRIKEAFYSLQGEGFHSGRPAIFCRFTNCNLWTGREADRSNAVCQFCDTDFLGTDGQNGG 62

Query: 64  RY-NVDQLADLIEEQWITGEK----EGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
            + + D LA  +   W T +        + VLTGGEPLLQVD  LI   ++ GFEIAVET
Sbjct: 63  SFKDADSLAKHLLALWPTDKNDQACPHPFVVLTGGEPLLQVDQTLIDVFHQHGFEIAVET 122

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
           NGT + P+ IDWICVSPKA   L +  G ELKLV+PQ  + P+     +F+ F LQ MD 
Sbjct: 123 NGTQKAPKNIDWICVSPKANAPLILDSGDELKLVYPQTELRPKQVETLNFKHFYLQAMDD 182

Query: 179 PF---LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                 E+N    ++YC ++P+W+LS+QTHK +G+
Sbjct: 183 ADPDIQEKNLKETLAYCLKHPQWKLSLQTHKILGV 217


>gi|326330124|ref|ZP_08196435.1| GntS [Nocardioidaceae bacterium Broad-1]
 gi|325951937|gb|EGD43966.1| GntS [Nocardioidaceae bacterium Broad-1]
          Length = 211

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 115/210 (54%), Positives = 139/210 (66%), Gaps = 1/210 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y +KEIF TLQGEG HAGR AVFCRF+ CNLW+GRE+DR  A C+FCDT FVG  G  
Sbjct: 1   MTYKVKEIFYTLQGEGTHAGRPAVFCRFTSCNLWTGREKDRDRAICKFCDTAFVGTDGEG 60

Query: 62  GGRYNVDQLADLIE-EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++            +W  G       V TGGEPLLQ+D   + A+   GF +AVETNG
Sbjct: 61  GGKFADAAALAAAVASKWPMGTDGQPMVVCTGGEPLLQLDDAAVAAMKAAGFYVAVETNG 120

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           TI PP GIDW+CVSPK G DL ++ GQELK V PQ +V P  +   DFE F +QPMDGP 
Sbjct: 121 TILPPAGIDWLCVSPKIGSDLVVESGQELKFVVPQADVDPTTFEALDFESFRVQPMDGPD 180

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           L  NT  A+ +C ++P+W LS QTHKF+GI
Sbjct: 181 LAANTEYAVKFCLEHPRWHLSTQTHKFLGI 210


>gi|87122356|ref|ZP_01078237.1| hypothetical protein MED121_00365 [Marinomonas sp. MED121]
 gi|86162331|gb|EAQ63615.1| hypothetical protein MED121_00365 [Marinomonas sp. MED121]
          Length = 216

 Score =  286 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 105/215 (48%), Positives = 140/215 (65%), Gaps = 7/215 (3%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +YSIKE F +LQGEG  AGR ++FCRFSGCNLW+G+E  R  + C+FCDTDF+G+ G  G
Sbjct: 1   MYSIKEAFYSLQGEGAQAGRPSIFCRFSGCNLWNGKETHRFDSLCQFCDTDFIGVDGQNG 60

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           G++   +   L  +     ++  +Y V TGGEP LQ+D  LI A+ + G+ I +ETNGT 
Sbjct: 61  GKFKQAKTLALHLDALWPNDQSDKYVVFTGGEPALQLDAALILAMKEMGYVIGIETNGTK 120

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDWICVSPK   +L I+ G ELKLV+PQ +++P  Y   DF+ F LQPMD   L 
Sbjct: 121 PLPDGIDWICVSPKTADELVIQQGHELKLVYPQSHLNPNKYTHLDFDTFYLQPMDQSHLP 180

Query: 183 EN-------TNLAISYCFQNPKWRLSVQTHKFIGI 210
           ++           ++YC  NPKWRLS+QTHK + I
Sbjct: 181 KDRISPESTLKQTLNYCLANPKWRLSLQTHKILEI 215


>gi|315499628|ref|YP_004088431.1| radical sam domain protein [Asticcacaulis excentricus CB 48]
 gi|315417640|gb|ADU14280.1| Radical SAM domain protein [Asticcacaulis excentricus CB 48]
          Length = 216

 Score =  286 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 116/214 (54%), Positives = 140/214 (65%), Gaps = 6/214 (2%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           YS KEIFLTLQGEGG AGRVAVF RF+GCNLWSGREQDR +A C FCDTDFVG  G  GG
Sbjct: 3   YSFKEIFLTLQGEGGQAGRVAVFARFAGCNLWSGREQDRATAACTFCDTDFVGTDGEGGG 62

Query: 64  RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           ++   +     ++  W   +   +  V TGGEPLLQ+D PLI A+   G+ IAVE+NGT+
Sbjct: 63  KFDTPEAAVAALDAHWGQIDPAHKSVVFTGGEPLLQLDAPLIAAVKSAGYFIAVESNGTL 122

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD----- 177
             P GIDW+C+SPK    L    GQELKLV+PQ  V P  +   DFERF LQP D     
Sbjct: 123 RAPIGIDWLCISPKGENRLHQTSGQELKLVWPQDRVDPAEFARMDFERFYLQPKDPLDQN 182

Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                 +T   I YC  +P+WR+SVQTHK +G+R
Sbjct: 183 PAMRAAHTQAVIDYCLAHPQWRMSVQTHKVVGVR 216


>gi|218886225|ref|YP_002435546.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757179|gb|ACL08078.1| radical SAM domain protein [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 224

 Score =  284 bits (729), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 107/222 (48%), Positives = 133/222 (59%), Gaps = 14/222 (6%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +KEIF +LQGEG HAGR AVFCRFSGCNLW+GREQDR  A CRFCDTDF G  G  GG
Sbjct: 3   YRVKEIFHSLQGEGVHAGRAAVFCRFSGCNLWTGREQDRPDAACRFCDTDFTGTDGPGGG 62

Query: 64  RYNVDQLADLIEEQW-------ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
            +   Q                + G     Y V TGGEP LQ+   L+ AL+  G +  V
Sbjct: 63  VFEDAQALAAAILAAFPYPLAPLDGGGWRPYVVFTGGEPALQLTPELLDALHAHGCQCGV 122

Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
           ETNGT+  P G+DW+ VSPKAG  L +  G ELKLV+PQ  V P ++ G DF  F LQP 
Sbjct: 123 ETNGTLPLPAGLDWVTVSPKAGTRLAVTRGDELKLVWPQDGVDPADFAGLDFGHFILQPR 182

Query: 177 D-------GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           D            ++    + +C ++P+WRL +QTHK++GIR
Sbjct: 183 DDAARGAGAQAGADHIAACVRHCLEHPRWRLGLQTHKYLGIR 224


>gi|120601647|ref|YP_966047.1| hypothetical protein Dvul_0597 [Desulfovibrio vulgaris DP4]
 gi|120561876|gb|ABM27620.1| conserved hypothetical protein [Desulfovibrio vulgaris DP4]
          Length = 216

 Score =  283 bits (726), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 109/215 (50%), Positives = 135/215 (62%), Gaps = 6/215 (2%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y +KEIF TLQGEG  AGR AVFCRFSGCNLW+GR QDR +A C FCDTDFVG  G  
Sbjct: 1   MTYRVKEIFHTLQGEGMRAGRAAVFCRFSGCNLWTGRAQDRPAAVCPFCDTDFVGTDGPG 60

Query: 62  GGRYNVDQLADLIEEQ---WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
           GG +               + TGE    Y V TGGEP LQ+D PLI  L+  G E+A+ET
Sbjct: 61  GGVFEDAATLAAAILAAFPYKTGEGYRPYVVFTGGEPALQLDRPLIDILHAHGCEVAIET 120

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
           NGT+  P+GIDW+ VSPKAG  L +  G ELKLV+PQ  + PE+Y    F    +QP DG
Sbjct: 121 NGTVRLPEGIDWVTVSPKAGTRLAVTSGDELKLVWPQQGICPESYESLAFTYLLMQPRDG 180

Query: 179 ---PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                  +  + A+ +C  +P+WRL +QTHK++GI
Sbjct: 181 LGDAGRGDAESEAVRWCLAHPRWRLCLQTHKYLGI 215


>gi|94495452|ref|ZP_01302032.1| hypothetical protein SKA58_05370 [Sphingomonas sp. SKA58]
 gi|94424840|gb|EAT09861.1| hypothetical protein SKA58_05370 [Sphingomonas sp. SKA58]
          Length = 215

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 111/213 (52%), Positives = 138/213 (64%), Gaps = 5/213 (2%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KE+FLTLQGEG  AGR AVF RF+GCNLWSGREQDR SA CRFCDTDFVG  G  GG
Sbjct: 3   YAVKEMFLTLQGEGVQAGRRAVFLRFAGCNLWSGREQDRASAVCRFCDTDFVGTDGLGGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           ++   +              EGRY VLTGGEP+LQVD  L+ AL+ RGF IA+E+NGT+ 
Sbjct: 63  KFADAEALADAALGLWGEGAEGRYIVLTGGEPMLQVDDALVDALHDRGFTIAIESNGTLA 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----VSPENYIGFDFERFSLQPMDG 178
              GIDWICVSPKAG D+  + G ELKLV+PQ          +    + F    +QP+D 
Sbjct: 123 AHPGIDWICVSPKAGSDVVQRSGHELKLVWPQPGGGHSLADVDAMARWAFAHHLIQPLDD 182

Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               +N   AI+     P+WRL+VQ HK++G+R
Sbjct: 183 AHAPDNARAAIALVMDRPQWRLTVQAHKYLGLR 215


>gi|46581062|ref|YP_011870.1| hypothetical protein DVU2658 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450483|gb|AAS97130.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234739|gb|ADP87593.1| Radical SAM domain protein [Desulfovibrio vulgaris RCH1]
          Length = 216

 Score =  281 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 108/215 (50%), Positives = 134/215 (62%), Gaps = 6/215 (2%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y +KEIF TLQGEG  AGR AVFCRFSGCNLW+G  QDR +A C FCDTDFVG  G  
Sbjct: 1   MTYRVKEIFHTLQGEGMRAGRAAVFCRFSGCNLWTGWAQDRPAAVCPFCDTDFVGTDGPG 60

Query: 62  GGRYNVDQLADLIEEQ---WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
           GG +               + TGE    Y V TGGEP LQ+D PLI  L+  G E+A+ET
Sbjct: 61  GGVFEDAATLAAAILAAFPYKTGEGYRPYVVFTGGEPALQLDRPLIDILHAHGCEVAIET 120

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
           NGT+  P+GIDW+ VSPKAG  L +  G ELKLV+PQ  + PE+Y    F    +QP DG
Sbjct: 121 NGTVRLPEGIDWVTVSPKAGTRLAVTSGDELKLVWPQQGICPESYESLAFTYLLMQPRDG 180

Query: 179 ---PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                  +  + A+ +C  +P+WRL +QTHK++GI
Sbjct: 181 LGDAGRGDAESEAVRWCLAHPRWRLCLQTHKYLGI 215


>gi|46200887|ref|ZP_00056296.2| COG0602: Organic radical activating enzymes [Magnetospirillum
           magnetotacticum MS-1]
          Length = 202

 Score =  281 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 116/208 (55%), Positives = 144/208 (69%), Gaps = 10/208 (4%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y+++EIF +LQGEG  AGR AVF RFSGCNLWSGR++DR  A CRFCDTDFVG     G 
Sbjct: 3   YTVREIFHSLQGEGVQAGRAAVFLRFSGCNLWSGRQEDRAKAVCRFCDTDFVG-----GV 57

Query: 64  RYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           +Y+    LA+ ++          RY V+TGGEP LQ+D  LI AL+  GF +AVETNGT+
Sbjct: 58  KYSDAQSLAEAVKAVG----GSTRYVVVTGGEPGLQLDETLIHALHGLGFSVAVETNGTL 113

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P G+DW+CVSPKAG +L +  G ELKLVFPQ   +PE +   DF  F LQPMDGP   
Sbjct: 114 GLPSGLDWVCVSPKAGTELMVTRGDELKLVFPQDGAAPEAFEHLDFAHFLLQPMDGPDRA 173

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT  AI++C  +P+WRLS+QTHK +GI
Sbjct: 174 ANTAAAIAHCLTHPRWRLSLQTHKIVGI 201


>gi|121997906|ref|YP_001002693.1| radical SAM domain-containing protein [Halorhodospira halophila
           SL1]
 gi|121589311|gb|ABM61891.1| Radical SAM domain protein [Halorhodospira halophila SL1]
          Length = 209

 Score =  277 bits (709), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 109/207 (52%), Positives = 133/207 (64%), Gaps = 1/207 (0%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++  +F TLQGEG  +GR AVF RF+GCNLWSGRE DR +A C FCDTDFVG  G  GG
Sbjct: 3   YAVHSLFYTLQGEGARSGRPAVFLRFAGCNLWSGREADRATAVCTFCDTDFVGTGGPGGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R+            W  G  E  Y V TGGEP LQ+D  L+ AL+ RGFE+AVETNGT+ 
Sbjct: 63  RFADAPELAAAVAAWWPGGGEP-YVVCTGGEPALQLDAALVAALHARGFEVAVETNGTLP 121

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
            P G+DWICVSPKAG +L I  G ELKL++PQ    P+ +    F RF LQP+D      
Sbjct: 122 LPAGVDWICVSPKAGTELAITAGDELKLIYPQPGAEPQRFTHLAFRRFYLQPLDDNQRGA 181

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +T   + YC  +P+W LSVQ HK +GI
Sbjct: 182 HTRAVLDYCRGHPQWWLSVQIHKDLGI 208


>gi|144898951|emb|CAM75815.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 210

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 109/211 (51%), Positives = 131/211 (62%), Gaps = 8/211 (3%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +KE+F TLQGEGG AGR A+F RF+GCNLWSGRE DR +AQC FCDTDFVG       
Sbjct: 3   YKVKELFYTLQGEGGQAGRAAIFLRFAGCNLWSGREADRATAQCPFCDTDFVGGDKYADA 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
                 +A      W  G       V+TGGEP LQ+D  LIQAL+  G EIAVETNGTI 
Sbjct: 63  DALAGAVA----ALWPKGGGGQPLVVITGGEPGLQLDEALIQALHFWGLEIAVETNGTIA 118

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
            P GIDW+CVSPKAG DL+   G E+KLV+PQ  + P  +    F  + LQP D P    
Sbjct: 119 LPPGIDWVCVSPKAGQDLETIAGDEIKLVWPQDGIDPTRFEKMPFRHYFLQPKDVPGDSA 178

Query: 184 NT----NLAISYCFQNPKWRLSVQTHKFIGI 210
                    ++YC  +P+WRLS+QTHK +GI
Sbjct: 179 AQAAHLQACVAYCLTHPRWRLSLQTHKILGI 209


>gi|94987241|ref|YP_595174.1| hypothetical protein LI0799 [Lawsonia intracellularis PHE/MN1-00]
 gi|94731490|emb|CAJ54853.1| conserved hypothetical protein [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 212

 Score =  274 bits (703), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 107/215 (49%), Positives = 136/215 (63%), Gaps = 7/215 (3%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y IKE+F T+QGEG   GR AVFCRFSGCNLWSG+E+DR  A+C+FCDTDF+     
Sbjct: 1   MSFY-IKELFYTIQGEGVQTGRPAVFCRFSGCNLWSGKEKDRAIAKCQFCDTDFLNADF- 58

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGR----YCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
            G   + +QL   I + +            Y V TGGEP LQ++  +I  L+K   EIA+
Sbjct: 59  -GILDSEEQLVANILQTFPQNNYTHPSYKPYVVFTGGEPSLQLNQVIINLLHKYHIEIAI 117

Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
           ETNGTI  P+ IDWI VSPK G +L    G ELKLV+PQ N  PE Y+  +F+ F LQP 
Sbjct: 118 ETNGTIPLPKHIDWITVSPKEGNELVTTVGNELKLVWPQQNCDPEKYLTLEFDNFILQPK 177

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           D   L  N  + I YC ++P W+L +Q+HK+IGIR
Sbjct: 178 DDKNLSNNIQICIEYCMKHPYWKLGLQSHKWIGIR 212


>gi|170744629|ref|YP_001773284.1| radical SAM domain-containing protein [Methylobacterium sp. 4-46]
 gi|168198903|gb|ACA20850.1| Radical SAM domain protein [Methylobacterium sp. 4-46]
          Length = 210

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 116/207 (56%), Positives = 141/207 (68%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y++KEIF TLQGEG  AGR AVFCRF+GCNLWSGRE DR  A C FCDTDFVG  G  GG
Sbjct: 3   YAVKEIFHTLQGEGAQAGRAAVFCRFAGCNLWSGREADRAEAVCHFCDTDFVGTDGAGGG 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R+   +           G     + V TGGEPLLQ+D  L+ A+  RGF  AVETNGT E
Sbjct: 63  RFPDAEALAAAIAAAWEGGPRNHFVVFTGGEPLLQLDAALLAAVRARGFAAAVETNGTQE 122

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
            P+G+DWICVSPKAG  L++  G ELKLV+PQ  ++PE+  G DF  F LQPMDGP    
Sbjct: 123 APEGLDWICVSPKAGAPLRLTRGDELKLVYPQAGLAPEDVAGLDFRHFFLQPMDGPDRAA 182

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +   A+++C ++ +WRLS+QTHK IGI
Sbjct: 183 HLAAAVAHCRRDARWRLSLQTHKLIGI 209


>gi|94500711|ref|ZP_01307241.1| Organic radical activating enzyme [Oceanobacter sp. RED65]
 gi|94427266|gb|EAT12246.1| Organic radical activating enzyme [Oceanobacter sp. RED65]
          Length = 223

 Score =  269 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 100/217 (46%), Positives = 130/217 (59%), Gaps = 10/217 (4%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           +++KE F TLQGEG  AGR +VF RFS CNLW+G+E  R +A C+FCDTD VG  G  GG
Sbjct: 6   FNVKEAFYTLQGEGARAGRASVFIRFSKCNLWNGKESGRGAAVCQFCDTDIVGTDGQNGG 65

Query: 64  RYNVDQLADLIEEQWIT---GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
            YN   L +L    W       K   Y V TGGEP LQ+   L+    + GFE AVE+NG
Sbjct: 66  TYNQQALVELALSLWPQLTDDTKSKPYVVFTGGEPALQLTESLVSDFQQAGFECAVESNG 125

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM---- 176
           T+  P  +DW+C+SPK   ++ +K   ELKLV+PQV++SP+   G     F L PM    
Sbjct: 126 TLPLPTNLDWVCISPKGTSEIVVKQCDELKLVYPQVDLSPDAVSGISASYFYLSPMADYG 185

Query: 177 ---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               G  + EN   A  YC  +P+WR+S+QTHK +GI
Sbjct: 186 EQNSGMIIRENMQAATQYCLDHPQWRMSLQTHKLLGI 222


>gi|121608068|ref|YP_995875.1| hypothetical protein Veis_1081 [Verminephrobacter eiseniae EF01-2]
 gi|121552708|gb|ABM56857.1| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2]
          Length = 222

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 120/212 (56%), Positives = 138/212 (65%), Gaps = 2/212 (0%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             YS+KEIF TLQGEGG  G  AVFCRF+GCNLWSGRE DR  A CRFCDTDFVG  GT 
Sbjct: 11  MTYSVKEIFYTLQGEGGQTGMPAVFCRFAGCNLWSGREADRADALCRFCDTDFVGTDGTL 70

Query: 62  GGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++   D LA+ I  QW   +   R  VLTGGEPLLQVD  L+ AL+ + F IAVETNG
Sbjct: 71  GGKFAQADALAERIAAQWPAADSAHRLVVLTGGEPLLQVDAALLAALHAQQFRIAVETNG 130

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-DFERFSLQPMDGP 179
           ++  P GIDW+CVSPKAG       GQELKLV+PQ  +          F    LQPMDGP
Sbjct: 131 SLAAPPGIDWLCVSPKAGAPWVQTQGQELKLVWPQAGMDLAAIARTGQFTHRFLQPMDGP 190

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               +  + I+ C Q P WRLS+QTHK  GIR
Sbjct: 191 DQAAHIAICIAACLQQPLWRLSLQTHKISGIR 222


>gi|171463302|ref|YP_001797415.1| Radical SAM domain protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192840|gb|ACB43801.1| Radical SAM domain protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 198

 Score =  260 bits (665), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 110/198 (55%), Positives = 138/198 (69%), Gaps = 8/198 (4%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y++KE F  LQGEG HAGR AVFCRF+GCNLWSGRE+DR +A C+FCDTDFVG  G  G
Sbjct: 1   MYTVKEPFPILQGEGAHAGRAAVFCRFAGCNLWSGREEDRGAAICQFCDTDFVGSDGLGG 60

Query: 63  GRY-NVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
           G++   + LAD IE  W +     + RY V TGGEPLLQ+D  LI AL+++GF +A+ETN
Sbjct: 61  GKFETANALADAIESSWRSTSAGPQQRYVVFTGGEPLLQLDDELIAALHQKGFAVAIETN 120

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP-----ENYIGFDFERFSLQ 174
           GTI+ P+GIDW+CVSPKAG +L +    ELKLV PQ + S        +   D+    LQ
Sbjct: 121 GTIKIPKGIDWVCVSPKAGSELIVLQADELKLVVPQQDHSELEKIVARFEKMDYRNRFLQ 180

Query: 175 PMDGPFLEENTNLAISYC 192
           PMDGP L+ NT LA+S C
Sbjct: 181 PMDGPGLKSNTELAVSLC 198


>gi|299148832|ref|ZP_07041894.1| GntS [Bacteroides sp. 3_1_23]
 gi|298513593|gb|EFI37480.1| GntS [Bacteroides sp. 3_1_23]
          Length = 183

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/211 (38%), Positives = 106/211 (50%), Gaps = 28/211 (13%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M +  I EIF +LQGEG H G  A+F RFSGCNL           +C FCDT        
Sbjct: 1   MMMRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDTQH-----E 44

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           +G     D++   ++      +      VLTGGEP L VD  LI  L++ G  + +ETNG
Sbjct: 45  EGKMMTDDEIIAEVK------KYPAVTVVLTGGEPSLWVDDELIDRLHQAGKYVTIETNG 98

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T   P  IDW+  SPK G  L I    E+K+V+   ++S   +     E F LQP     
Sbjct: 99  TRPLPVAIDWVTCSPKQGVKLAIDRMDEVKVVYEGQDISI--FELLPAEHFFLQPCSC-- 154

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
              NT   +    ++PKWRLS+QTHK I IR
Sbjct: 155 --NNTASTVDCVMRHPKWRLSLQTHKLIDIR 183


>gi|160887244|ref|ZP_02068247.1| hypothetical protein BACOVA_05261 [Bacteroides ovatus ATCC 8483]
 gi|315919753|ref|ZP_07915993.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156107655|gb|EDO09400.1| hypothetical protein BACOVA_05261 [Bacteroides ovatus ATCC 8483]
 gi|313693628|gb|EFS30463.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 183

 Score =  259 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 80/211 (37%), Positives = 107/211 (50%), Gaps = 28/211 (13%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M +  I EIF +LQGEG H G  A+F RFSGCNL           +C FCDT        
Sbjct: 1   MTMRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDTQH-----E 44

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           +G     +++   ++      +      VLTGGEP L +D  LI  L++ G  + +ETNG
Sbjct: 45  EGTMMTDEEIITKVK------KYPAVTVVLTGGEPSLWIDDQLIDLLHQAGKYVTIETNG 98

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T   P  IDW+  SPK G  L I    E+K+V+   ++S   +     E F LQP     
Sbjct: 99  THPLPASIDWVTCSPKQGAKLAIDRMNEVKVVYEGQDISI--FELLPAEHFFLQPCSC-- 154

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
              NT L +    ++PKWRLS+QTHK I IR
Sbjct: 155 --NNTALTVDCVMRHPKWRLSLQTHKLIDIR 183


>gi|298384120|ref|ZP_06993681.1| GntS [Bacteroides sp. 1_1_14]
 gi|298263724|gb|EFI06587.1| GntS [Bacteroides sp. 1_1_14]
          Length = 182

 Score =  258 bits (659), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 82/210 (39%), Positives = 105/210 (50%), Gaps = 28/210 (13%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
            +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT         
Sbjct: 1   MMRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCSFCDTQH-----EA 44

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           G     D++   +       +      +LTGGEP L +D  LI  L+K G  + +ETNGT
Sbjct: 45  GTLMTDDEIIAEVS------KYPAVTVILTGGEPSLWIDDALIDRLHKAGKYVCIETNGT 98

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
              P+ IDW+  SPK G  L I    E+K+V+   ++S   Y     E F LQP      
Sbjct: 99  RPLPESIDWVTCSPKQGVKLGITRMDEVKVVYEGQDISI--YELLPAEHFFLQPCSC--- 153

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             NT L +    ++PKWRLS+QTHK I IR
Sbjct: 154 -NNTALTVDCVMRHPKWRLSLQTHKLIDIR 182


>gi|29349862|ref|NP_813365.1| hypothetical protein BT_4454 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29341773|gb|AAO79559.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 182

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 81/210 (38%), Positives = 105/210 (50%), Gaps = 28/210 (13%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
            +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT         
Sbjct: 1   MMRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCSFCDTQH-----EA 44

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           G     D++   +       +      +LTGGEP L +D  LI  L++ G  + +ETNGT
Sbjct: 45  GTLMTDDEIIAEVS------KYPAVTVILTGGEPSLWIDDALIDRLHEAGKYVCIETNGT 98

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
              P+ IDW+  SPK G  L I    E+K+V+   ++S   Y     E F LQP      
Sbjct: 99  RPLPESIDWVTCSPKQGVKLGITRMDEVKVVYEGQDISI--YELLPAEHFFLQPCSC--- 153

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             NT L +    ++PKWRLS+QTHK I IR
Sbjct: 154 -NNTALTVDCVMRHPKWRLSLQTHKLIDIR 182


>gi|253569769|ref|ZP_04847178.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840150|gb|EES68232.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 181

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 81/209 (38%), Positives = 105/209 (50%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT         G
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCSFCDTQH-----EAG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                D++   +       +      +LTGGEP L +D  LI  L++ G  + +ETNGT 
Sbjct: 45  TLMTDDEIIAEVS------KYPAVTVILTGGEPSLWIDDALIDRLHEAGKYVCIETNGTR 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+ IDW+  SPK G  L I    E+K+V+   ++S   Y     E F LQP       
Sbjct: 99  PLPESIDWVTCSPKQGVKLGITRMDEVKVVYEGQDISI--YELLPAEHFFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT L +    ++PKWRLS+QTHK I IR
Sbjct: 153 NNTALTVDCVMRHPKWRLSLQTHKLIDIR 181


>gi|262408739|ref|ZP_06085285.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|293369177|ref|ZP_06615771.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f]
 gi|294647054|ref|ZP_06724666.1| radical SAM domain protein [Bacteroides ovatus SD CC 2a]
 gi|294807238|ref|ZP_06766052.1| radical SAM domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|298481567|ref|ZP_06999759.1| GntS [Bacteroides sp. D22]
 gi|262353604|gb|EEZ02698.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292635760|gb|EFF54258.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f]
 gi|292637600|gb|EFF56006.1| radical SAM domain protein [Bacteroides ovatus SD CC 2a]
 gi|294445536|gb|EFG14189.1| radical SAM domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|295087026|emb|CBK68549.1| Organic radical activating enzymes [Bacteroides xylanisolvens XB1A]
 gi|298272431|gb|EFI14000.1| GntS [Bacteroides sp. D22]
          Length = 182

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/210 (37%), Positives = 105/210 (50%), Gaps = 28/210 (13%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
            +  I EIF +LQGEG H G  A+F RFSGCNL           +C FCDT        +
Sbjct: 1   MMRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDTQH-----EE 44

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           G     D++   ++      +      VLTGGEP L +D  LI  L++ G  + +ETNGT
Sbjct: 45  GKMMTDDEIIAEVK------KYPAVTVVLTGGEPSLWIDDELIDRLHQAGKYVTIETNGT 98

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
              P  IDW+  SPK G  L I    E+K+V+   ++S   +     E F LQP      
Sbjct: 99  RPLPAAIDWVTCSPKQGVKLAIDRMDEVKVVYEGQDISI--FELLPAEHFFLQPCSC--- 153

Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             NT   +    ++PKWRLS+QTHK I IR
Sbjct: 154 -NNTASTVDCVMRHPKWRLSLQTHKLIDIR 182


>gi|237715731|ref|ZP_04546212.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229444440|gb|EEO50231.1| conserved hypothetical protein [Bacteroides sp. D1]
          Length = 181

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/209 (37%), Positives = 105/209 (50%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  A+F RFSGCNL           +C FCDT        +G
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDTQH-----EEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                D++   ++      +      VLTGGEP L +D  LI  L++ G  + +ETNGT 
Sbjct: 45  KMMTDDEIIAEVK------KYPAVTVVLTGGEPSLWIDDELIDRLHQAGKYVTIETNGTR 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G  L I    E+K+V+   ++S   +     E F LQP       
Sbjct: 99  PLPAAIDWVTCSPKQGVKLAIDRMDEVKVVYEGQDISI--FELLPAEHFFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT   +    ++PKWRLS+QTHK I IR
Sbjct: 153 NNTASTVDCVMRHPKWRLSLQTHKLIDIR 181


>gi|237721523|ref|ZP_04552004.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449319|gb|EEO55110.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 181

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/209 (37%), Positives = 105/209 (50%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  A+F RFSGCNL           +C FCDT        +G
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDTQH-----EEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                D++   ++      +      VLTGGEP L +D  LI  L++ G  + +ETNGT 
Sbjct: 45  KMMTDDEIIAEVK------KYPAVTVVLTGGEPSLWIDDELIDRLHEAGKYVTIETNGTR 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G  L I    E+K+V+   ++S   +     E F LQP       
Sbjct: 99  PLPAAIDWVTCSPKQGGKLAIDRMDEVKVVYEGQDISI--FELLPAEHFFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT   +    ++PKWRLS+QTHK I IR
Sbjct: 153 NNTASTVDCVMRHPKWRLSLQTHKLIDIR 181


>gi|260171438|ref|ZP_05757850.1| hypothetical protein BacD2_06190 [Bacteroides sp. D2]
          Length = 181

 Score =  254 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 79/209 (37%), Positives = 106/209 (50%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  A+F RFSGCNL           +C FCDT        +G
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAIFVRFSGCNL-----------KCDFCDTQH-----EEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                +++   ++      +      VLTGGEP L +D  LI  L++ G  + +ETNGT 
Sbjct: 45  TMMTDEEIITKVK------KYPAVTVVLTGGEPSLWIDDQLIDLLHQAGKYVTIETNGTH 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G  L I    E+K+V+   ++S   +     E F LQP       
Sbjct: 99  PLPASIDWVTCSPKQGAKLAIDRMNEVKVVYEGQDISI--FELLPAEHFFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT L +    ++PKWRLS+QTHK I IR
Sbjct: 153 NNTALTVDCVMRHPKWRLSLQTHKLIDIR 181


>gi|53714880|ref|YP_100872.1| hypothetical protein BF3595 [Bacteroides fragilis YCH46]
 gi|253565984|ref|ZP_04843438.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|52217745|dbj|BAD50338.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|251945088|gb|EES85526.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 181

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 78/208 (37%), Positives = 103/208 (49%), Gaps = 28/208 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        +G
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCDFCDTRH-----EEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                + + + I      G+      +LTGGEP L +D   I  L++ G  + +ETNGT 
Sbjct: 45  EMMTDEDIVNEI------GKYPAVMVILTGGEPSLWIDDAFIDLLHRAGKYVCIETNGTK 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G +L +    E+K+V+   N+    Y     E F LQP       
Sbjct: 99  PLPAAIDWVTCSPKQGVNLALNRMDEVKVVYEGQNIDV--YEQLPAEHFFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT   +    ++PKWRLS+QTHK I I
Sbjct: 153 NNTAETVDCVMRHPKWRLSLQTHKLINI 180


>gi|60682861|ref|YP_213005.1| hypothetical protein BF3399 [Bacteroides fragilis NCTC 9343]
 gi|60494295|emb|CAH09090.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
 gi|301164330|emb|CBW23888.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 181

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/208 (37%), Positives = 103/208 (49%), Gaps = 28/208 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        +G
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCDFCDTRH-----EEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                + + + I      G+      +LTGGEP L +D   I  L++ G  + +ETNGT 
Sbjct: 45  EMMTDEDIVNEI------GKYPAVMVILTGGEPSLWIDDAFIDLLHRAGKYVCIETNGTK 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G +L +    E+K+V+   N+    Y     E F LQP       
Sbjct: 99  PLPVAIDWVTCSPKQGVNLALNRMDEVKVVYEGQNIDV--YEQLPAEHFFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT   +    ++PKWRLS+QTHK I I
Sbjct: 153 NNTAETVDCVMRHPKWRLSLQTHKLINI 180


>gi|265766736|ref|ZP_06094565.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263253113|gb|EEZ24589.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 181

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/208 (37%), Positives = 102/208 (49%), Gaps = 28/208 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        +G
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCDFCDTRH-----EEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                + + + I      G+      +LTGGEP L +D   I  L+  G  + +ETNGT 
Sbjct: 45  EMMTDEDIVNEI------GKYPAVMVILTGGEPSLWIDDAFIDLLHHAGKYVCIETNGTK 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G +L +    E+K+V+   N+    Y     E F LQP       
Sbjct: 99  PLPAAIDWVTCSPKQGVNLALNRMDEVKVVYEGQNIDV--YEQLPAEHFFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT   +    ++PKWRLS+QTHK I I
Sbjct: 153 NNTAETVDCVMRHPKWRLSLQTHKLINI 180


>gi|153809323|ref|ZP_01961991.1| hypothetical protein BACCAC_03636 [Bacteroides caccae ATCC 43185]
 gi|149128093|gb|EDM19314.1| hypothetical protein BACCAC_03636 [Bacteroides caccae ATCC 43185]
          Length = 181

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/209 (37%), Positives = 108/209 (51%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG + G  A+F RFSGCNL           +C FCDT        +G
Sbjct: 1   MRKINEIFYSLQGEGYYTGTPAIFIRFSGCNL-----------KCSFCDTQH-----EEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                D++   ++      +      VLTGGEP L +D  LI  L++ G  + VETNGT 
Sbjct: 45  TMMTDDEIIAEVK------KYPAVTVVLTGGEPSLWIDATLIDRLHEAGKYVTVETNGTN 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+ +DW+  SPK G +LKI    E+K+V+   ++S   +     E F LQP       
Sbjct: 99  PLPESVDWVTCSPKQGVELKINRIDEVKVVYEGQDISI--FELLPAEHFFLQPCSCI--- 153

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT   +    ++PKWRLS+QTHK I IR
Sbjct: 154 -NTADTVDCVMRHPKWRLSLQTHKLIDIR 181


>gi|255011037|ref|ZP_05283163.1| hypothetical protein Bfra3_17992 [Bacteroides fragilis 3_1_12]
 gi|313148842|ref|ZP_07811035.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137609|gb|EFR54969.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 181

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/208 (36%), Positives = 101/208 (48%), Gaps = 28/208 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT         G
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCDFCDTRH-----ETG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                +++ + ++      +      +LTGGEP L +D   I  L+  G  + +ETNGT 
Sbjct: 45  EMMTDEEIVNEVK------KYPAVMVILTGGEPSLWIDDAFIDLLHGAGKYVCIETNGTK 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G  L +    E+K+V+   N+    Y     E F LQP       
Sbjct: 99  PLPAAIDWVTCSPKQGVKLALNRMDEVKVVYEGQNIDV--YEQLPAEHFFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT   +    ++P+WRLS+QTHK I I
Sbjct: 153 NNTAETVDCVMRHPRWRLSLQTHKLINI 180


>gi|298376715|ref|ZP_06986670.1| hypothetical protein HMPREF0104_02900 [Bacteroides sp. 3_1_19]
 gi|301310018|ref|ZP_07215957.1| GntS [Bacteroides sp. 20_3]
 gi|298266593|gb|EFI08251.1| hypothetical protein HMPREF0104_02900 [Bacteroides sp. 3_1_19]
 gi|300831592|gb|EFK62223.1| GntS [Bacteroides sp. 20_3]
          Length = 181

 Score =  250 bits (640), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 76/209 (36%), Positives = 106/209 (50%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        +G
Sbjct: 1   MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------RCSFCDTRH-----EEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                +++ + +           R  +LTGGEP L +D  LI  L + G +I +ETNGT 
Sbjct: 45  VMMTDEEIVEKVSS------FPARMVILTGGEPSLWIDKALISRLREAGKQICIETNGTR 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDW+  SPK    + ++   E+K+V+   ++S   Y         LQP       
Sbjct: 99  PLPDGIDWVTCSPKENAPVVLERVDEIKVVYTGQDLS--AYAEIPARYHFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT   + Y  ++P+WRLS+QTHK I I+
Sbjct: 153 QNTKEVVDYILRHPRWRLSLQTHKLIDIQ 181


>gi|255013373|ref|ZP_05285499.1| hypothetical protein B2_05655 [Bacteroides sp. 2_1_7]
 gi|262381499|ref|ZP_06074637.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296676|gb|EEY84606.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 181

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/209 (36%), Positives = 106/209 (50%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        +G
Sbjct: 1   MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------RCSFCDTRH-----EEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                +++ + +           R  +LTGGEP L +D  LI  L + G +I +ETNGT 
Sbjct: 45  VMMTDEEIVEKVSS------FPARIVILTGGEPSLWIDKALISRLREAGKQICIETNGTR 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDW+  SPK    + ++   E+K+V+   ++S   Y         LQP       
Sbjct: 99  PLPDGIDWVTCSPKENAPVVLERIDEIKVVYTGQDLS--AYAEIPARYHFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT   + Y  ++P+WRLS+QTHK I I+
Sbjct: 153 QNTKEVVDYILRHPRWRLSLQTHKLIDIQ 181


>gi|189467678|ref|ZP_03016463.1| hypothetical protein BACINT_04069 [Bacteroides intestinalis DSM
           17393]
 gi|189435942|gb|EDV04927.1| hypothetical protein BACINT_04069 [Bacteroides intestinalis DSM
           17393]
          Length = 181

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/209 (38%), Positives = 105/209 (50%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        +G
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCSFCDTRH-----EEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + D++   +      G+      +LTGGEP L VD   I  L++ G  + +ETNGT 
Sbjct: 45  VLMSDDEIIAEV------GKYPAVTVILTGGEPSLWVDEAFIDRLHQAGKYVCIETNGTN 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G  L I    E+K+V+   ++    Y     E F LQP       
Sbjct: 99  PLPPNIDWVTCSPKQGVKLGITRMDEVKVVYEGQDIGV--YELLPAEYFFLQPCSCS--- 153

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT   ++   Q+PKWRLS+QTHK I IR
Sbjct: 154 -NTAETVACVMQHPKWRLSLQTHKLIDIR 181


>gi|224538811|ref|ZP_03679350.1| hypothetical protein BACCELL_03706 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519568|gb|EEF88673.1| hypothetical protein BACCELL_03706 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 181

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/209 (39%), Positives = 107/209 (51%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        +G
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCSFCDTRH-----EEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + D++   +      G+      +LTGGEP L +D   I  L++ G  + +ETNGT 
Sbjct: 45  VLMSDDEIIAEV------GKYPAVTVILTGGEPSLWIDEVFIDRLHQAGKYVCIETNGTN 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             PQ IDW+  SPK G  L I    E+K+V+   ++  E Y     E F LQP       
Sbjct: 99  PLPQNIDWVTCSPKQGVKLGITRMDEVKVVYEGQDI--EVYELLPAEYFFLQPCSCS--- 153

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT   ++   Q+PKWRLS+QTHK I IR
Sbjct: 154 -NTAETVACVMQHPKWRLSLQTHKLIDIR 181


>gi|256840895|ref|ZP_05546403.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738167|gb|EEU51493.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 181

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 76/209 (36%), Positives = 106/209 (50%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        +G
Sbjct: 1   MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------RCGFCDTRH-----EEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                +++ + +           R  +LTGGEP L +D  LI  L + G +I +ETNGT 
Sbjct: 45  VMMTDEEIVEKVSS------FPARMVILTGGEPSLWIDKALISRLREAGKQICIETNGTR 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDW+  SPK    + ++   E+K+V+   ++S   Y         LQP       
Sbjct: 99  PLPDGIDWVTCSPKENAPVVLERVDEIKVVYTGQDLS--AYAEIPARYHFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT   + Y  ++P+WRLS+QTHK I I+
Sbjct: 153 QNTKEVVDYILRHPRWRLSLQTHKLIDIQ 181


>gi|150007939|ref|YP_001302682.1| hypothetical protein BDI_1300 [Parabacteroides distasonis ATCC
           8503]
 gi|149936363|gb|ABR43060.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
          Length = 181

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/209 (35%), Positives = 106/209 (50%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        +G
Sbjct: 1   MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------RCGFCDTRH-----EEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                +++ + +           R  +LTGGEP L +D  LI  L + G ++ +ETNGT 
Sbjct: 45  VMMTDEEIVEKVSS------FPARMVILTGGEPSLWIDKSLISRLREAGKQVCIETNGTR 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDW+  SPK    + ++   E+K+V+   ++S   Y         LQP       
Sbjct: 99  PLPDGIDWVTCSPKENAPVVLERVDEIKVVYTGQDLS--AYAEIPARYHFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT   + Y  ++P+WRLS+QTHK I I+
Sbjct: 153 QNTKEVVDYILRHPRWRLSLQTHKLIDIQ 181


>gi|298376475|ref|ZP_06986430.1| hypothetical protein HMPREF0104_02657 [Bacteroides sp. 3_1_19]
 gi|298266353|gb|EFI08011.1| hypothetical protein HMPREF0104_02657 [Bacteroides sp. 3_1_19]
          Length = 181

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 77/209 (36%), Positives = 106/209 (50%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF ++QGEG   G  AVF RFSGCNL           +C FCDT+       +G
Sbjct: 1   MKKINEIFYSIQGEGYFTGTPAVFVRFSGCNL-----------RCPFCDTEH-----KEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + D++   I            + VLTGGEP +QV   L+  +   G  + +ETNGT+
Sbjct: 45  KMLSDDEIIAEIRR------YPALHVVLTGGEPCMQVTYDLVDKIKATGRFVQIETNGTL 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
            PP  IDWI  SPK G    +    ELK+V+   ++S   Y  +    + LQP  G    
Sbjct: 99  VPPVNIDWITCSPKEGGKTVVINPNELKVVYTGQDMS--QYDKYSAGVYYLQPCSG---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT   I+Y  + PKW+LS+QTHK + +R
Sbjct: 153 RNTKEVINYIKEYPKWKLSLQTHKILNVR 181


>gi|218129819|ref|ZP_03458623.1| hypothetical protein BACEGG_01399 [Bacteroides eggerthii DSM 20697]
 gi|317475833|ref|ZP_07935090.1| radical SAM superfamily protein [Bacteroides eggerthii 1_2_48FAA]
 gi|217987929|gb|EEC54254.1| hypothetical protein BACEGG_01399 [Bacteroides eggerthii DSM 20697]
 gi|316907993|gb|EFV29690.1| radical SAM superfamily protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 181

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/209 (36%), Positives = 104/209 (49%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        +G
Sbjct: 1   MRKINEIFYSLQGEGFHTGTPAVFIRFSGCNL-----------KCSFCDTQH-----EEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + +++ D +      GE      +LTGGEP L +D   +  L++ G  + +ETNGT 
Sbjct: 45  VLMSDEEILDAV------GEYPATTVILTGGEPSLWIDREFVDRLHRIGKYVCIETNGTR 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G    I    E+K+V+   +++   Y       F LQP       
Sbjct: 99  ALPDNIDWVTCSPKQGAKPVISRMDEVKVVYEGQDITV--YELLPAGHFFLQPCSCS--- 153

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            N    ++   Q+PKWRLS+QTHK I IR
Sbjct: 154 -NVAETVACVMQHPKWRLSLQTHKLIDIR 181


>gi|319901441|ref|YP_004161169.1| Radical SAM domain protein [Bacteroides helcogenes P 36-108]
 gi|319416472|gb|ADV43583.1| Radical SAM domain protein [Bacteroides helcogenes P 36-108]
          Length = 181

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/209 (36%), Positives = 105/209 (50%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        +G
Sbjct: 1   MRKINEIFYSLQGEGYHTGIPAVFIRFSGCNL-----------KCSFCDT-----HHEEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + D++ + +       +      +LTGGEP L +D   +  L++ G  + +ETNGT 
Sbjct: 45  RLMSDDEIMEEVR------KYPAATVILTGGEPSLWIDSEFVDRLHRAGKYVCIETNGTH 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G +L+I G  E+K+V+   +++   Y       F LQP       
Sbjct: 99  PLPDNIDWVTCSPKLGGNLRITGMDEVKVVYEGQDITV--YEQLPAGHFFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            N    +     +PKWRLS+QTHK I IR
Sbjct: 153 NNIGETVDCVMHHPKWRLSLQTHKLIDIR 181


>gi|160888847|ref|ZP_02069850.1| hypothetical protein BACUNI_01266 [Bacteroides uniformis ATCC 8492]
 gi|156861746|gb|EDO55177.1| hypothetical protein BACUNI_01266 [Bacteroides uniformis ATCC 8492]
          Length = 181

 Score =  245 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/209 (35%), Positives = 101/209 (48%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT         G
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCPFCDTQH-----EDG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + + +   +              +LTGGEP L +D   +  L++ G  + +ETNGT 
Sbjct: 45  ILMSDEDIVTEVSR------YPAATVILTGGEPSLWIDREFVDCLHQAGKYVCIETNGTH 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G  L+I    E+K+V+   +++   Y       F LQP       
Sbjct: 99  PLPDNIDWVTCSPKQGVKLEITRMNEVKVVYEGQDITV--YEQLPAGHFFLQPCSCS--- 153

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT   +    ++PKWRLS+QTHK I IR
Sbjct: 154 -NTAETVDCVMKHPKWRLSLQTHKLIDIR 181


>gi|189460362|ref|ZP_03009147.1| hypothetical protein BACCOP_00999 [Bacteroides coprocola DSM 17136]
 gi|189432914|gb|EDV01899.1| hypothetical protein BACCOP_00999 [Bacteroides coprocola DSM 17136]
          Length = 181

 Score =  245 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/208 (40%), Positives = 112/208 (53%), Gaps = 28/208 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT          
Sbjct: 1   MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------KCSFCDTQH-------- 41

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             + +    ++I E         +  +LTGGEP L +D  L +AL+  G  IA+ETNGT 
Sbjct: 42  EEFRMMTDDEIIAEVC---TYPCQMVILTGGEPGLSIDSQLTKALHAAGKYIAIETNGTC 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+ IDW+  SPK G  LK+    E+K+V+   +VSP  Y+    +   LQP  G    
Sbjct: 99  VLPEDIDWVTCSPKEGTTLKLHHIDEVKVVYVGQDVSP--YLKLPAKHHFLQPCSG---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +NTN  I+Y  ++P+WRLS+QTHK I I
Sbjct: 153 QNTNDVIAYIKEHPQWRLSLQTHKLIDI 180


>gi|294775146|ref|ZP_06740672.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
 gi|294450958|gb|EFG19432.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
          Length = 193

 Score =  245 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/210 (36%), Positives = 108/210 (51%), Gaps = 28/210 (13%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           + +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        
Sbjct: 11  LSMRRINEIFYSLQGEGYHTGIPAVFVRFSGCNL-----------RCPFCDTQH-----E 54

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           +G   + + +   +       +   +  +LTGGEP L +D  L+ AL+  G  + +ETNG
Sbjct: 55  EGTLMSDEDIVMEV------AKYSTQVVILTGGEPGLWIDEKLVDALHHEGKYVCIETNG 108

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           T   P+ IDW+  SPK G  + +    E+K+V+   +VS   Y+      + LQP     
Sbjct: 109 TCLLPENIDWVTCSPKEGAKINLDRIDEVKVVYVGQDVS--AYLDLSASHYFLQPCSC-- 164

Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              NT   I+Y  Q+P+WRLS+QTHK + I
Sbjct: 165 --ANTEEVIAYILQHPEWRLSLQTHKLLQI 192


>gi|329955365|ref|ZP_08296273.1| radical SAM domain protein [Bacteroides clarus YIT 12056]
 gi|328525768|gb|EGF52792.1| radical SAM domain protein [Bacteroides clarus YIT 12056]
          Length = 181

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/208 (36%), Positives = 103/208 (49%), Gaps = 28/208 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF R SGCNL           +C FCDT        +G
Sbjct: 1   MRKINEIFYSLQGEGFHTGTPAVFIRLSGCNL-----------KCPFCDTQH-----EEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                +++   +      G+      +LTGGEP L +D   +  L++ G  + +ETNGT 
Sbjct: 45  VLMTDEEIMAEV------GKYPAMMVILTGGEPSLWIDREFVDRLHQLGKYVCIETNGTH 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
           E P  IDW+  SPK G  L I    E+K+V+   +++   Y     + F LQP       
Sbjct: 99  ELPDNIDWVTCSPKRGAKLSISRMDEVKVVYESQDITV--YEQLPAKHFFLQPCSCS--- 153

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT   +    Q+PKWRLS+QTHK I I
Sbjct: 154 -NTVETVVRVMQHPKWRLSLQTHKLINI 180


>gi|299141903|ref|ZP_07035038.1| organic radical activating enzyme [Prevotella oris C735]
 gi|298576754|gb|EFI48625.1| organic radical activating enzyme [Prevotella oris C735]
          Length = 190

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 87/213 (40%), Positives = 114/213 (53%), Gaps = 28/213 (13%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           K Y + EIF +LQGEG + GR AVF RFSGCNL           +C FCDTDF       
Sbjct: 3   KTYKVNEIFYSLQGEGRNTGRAAVFIRFSGCNL-----------KCSFCDTDFKLYH--- 48

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
                 + + D + E    G     + VLTGGEP LQVD  LI AL+  GF +A+E+NGT
Sbjct: 49  --EMTAEAIVDAVREWKTAG-----FVVLTGGEPTLQVDSQLIDALHAEGFYVAMESNGT 101

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
             PP  +DW+ +SPK    + +    ELK +F      P + +G + + + LQP D    
Sbjct: 102 NVPPANLDWLTISPKEH--VVVTECNELKCIFD--GQKPVDDLGIEADYYYLQPCDVGND 157

Query: 182 EEN---TNLAISYCFQNPKWRLSVQTHKFIGIR 211
            +N   T   I Y   +PKWRLS+QTHK IG +
Sbjct: 158 VQNRAITQACIRYIASHPKWRLSLQTHKMIGFQ 190


>gi|212693923|ref|ZP_03302051.1| hypothetical protein BACDOR_03445 [Bacteroides dorei DSM 17855]
 gi|237724017|ref|ZP_04554498.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|212663455|gb|EEB24029.1| hypothetical protein BACDOR_03445 [Bacteroides dorei DSM 17855]
 gi|229437681|gb|EEO47758.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 181

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/208 (37%), Positives = 108/208 (51%), Gaps = 28/208 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        +G
Sbjct: 1   MRRINEIFYSLQGEGYHTGIPAVFVRFSGCNL-----------RCPFCDTQH-----EEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + + +A  +       +   +  +LTGGEP L +D  L+ AL+  G  + +ETNGT 
Sbjct: 45  TLMSDEDIAMEV------AKYSTQVVILTGGEPGLWIDEKLVDALHHEGKYVCIETNGTC 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+ IDW+  SPK G  + +    E+K+V+   +VS   Y+      + LQP       
Sbjct: 99  LLPENIDWVTCSPKEGAKINLDRIDEVKVVYVGQDVS--AYLDLSASHYFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT   I+Y  Q+P+WRLS+QTHK + I
Sbjct: 153 ANTEEVIAYILQHPEWRLSLQTHKLLQI 180


>gi|167763255|ref|ZP_02435382.1| hypothetical protein BACSTE_01627 [Bacteroides stercoris ATCC
           43183]
 gi|167698549|gb|EDS15128.1| hypothetical protein BACSTE_01627 [Bacteroides stercoris ATCC
           43183]
          Length = 181

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/209 (36%), Positives = 105/209 (50%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        +G
Sbjct: 1   MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------KCSFCDTQH-----EEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + +++   +      G+      +LTGGEP L +D   +  L++ G  + +ETNGT 
Sbjct: 45  VWMSDEEILAEV------GKYPAMTVILTGGEPSLWIDREFVDCLHRMGKYVCIETNGTH 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G  L I    E+K+V+   +++   Y       F LQP       
Sbjct: 99  SLPDNIDWVTCSPKQGAKLCISRMDEVKVVYEGQDIAV--YESLPAGHFFLQPCSCS--- 153

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT   ++   Q+PKWRLS+QTHK I I+
Sbjct: 154 -NTAETVACVMQHPKWRLSLQTHKLIEIK 181


>gi|270293623|ref|ZP_06199825.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275090|gb|EFA20950.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 181

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/209 (35%), Positives = 102/209 (48%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT         G
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCPFCDTQH-----EDG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + + +   +       +      +LTGGEP L +D   +  L++ G  + +ETNGT 
Sbjct: 45  ILMSDEDIVTEVS------KYPAATVILTGGEPSLWIDREFVDCLHQAGKYVCIETNGTR 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G  L+I    E+K+V+   +++   Y       F LQP       
Sbjct: 99  PLPDNIDWVTCSPKQGVKLEITRMNEVKVVYEGQDITV--YEQLPAGHFFLQPCSCS--- 153

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT   +    ++PKWRLS+QTHK I IR
Sbjct: 154 -NTAETVDCVMKHPKWRLSLQTHKLIDIR 181


>gi|317479410|ref|ZP_07938544.1| radical SAM superfamily protein [Bacteroides sp. 4_1_36]
 gi|316904484|gb|EFV26304.1| radical SAM superfamily protein [Bacteroides sp. 4_1_36]
          Length = 181

 Score =  244 bits (623), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 75/209 (35%), Positives = 101/209 (48%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT         G
Sbjct: 1   MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNL-----------KCLFCDTQH-----EDG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + + +   +              +LTGGEP L +D   +  L++ G  + +ETNGT 
Sbjct: 45  ILMSDEDIVTEVSR------YPAATVILTGGEPSLWIDREFVDCLHQAGKYVCIETNGTR 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G  L+I    E+K+V+   +++   Y       F LQP       
Sbjct: 99  PLPDNIDWVTCSPKQGVKLEITRMNEVKVVYEGQDITV--YEQLPAGHFFLQPCSCS--- 153

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            NT   +    ++PKWRLS+QTHK I IR
Sbjct: 154 -NTAETVDCVMKHPKWRLSLQTHKLIDIR 181


>gi|281426145|ref|ZP_06257058.1| radical SAM domain protein [Prevotella oris F0302]
 gi|281399721|gb|EFB30552.1| radical SAM domain protein [Prevotella oris F0302]
          Length = 190

 Score =  244 bits (623), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 86/213 (40%), Positives = 114/213 (53%), Gaps = 28/213 (13%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           K Y + EIF +LQGEG + GR AVF RFSGCNL           +C FCDTDF       
Sbjct: 3   KTYKVNEIFYSLQGEGRNTGRAAVFIRFSGCNL-----------KCSFCDTDFKLYH--- 48

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
                 + + D + +    G     + VLTGGEP LQVD  LI AL+  GF +A+E+NGT
Sbjct: 49  --EMTAEAIVDAVRDWKTAG-----FVVLTGGEPTLQVDGKLIDALHAEGFYVAMESNGT 101

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
             PP  +DW+ +SPK    + +    ELK +F      P + +G + + + LQP D    
Sbjct: 102 NVPPPNLDWLTISPKEH--VVVTECNELKCIFD--GQKPVDDLGIEADYYYLQPCDVGND 157

Query: 182 EEN---TNLAISYCFQNPKWRLSVQTHKFIGIR 211
            +N   T   I Y   +PKWRLS+QTHK IG +
Sbjct: 158 VQNRTITQACIRYIASHPKWRLSLQTHKMIGFQ 190


>gi|150004624|ref|YP_001299368.1| hypothetical protein BVU_2083 [Bacteroides vulgatus ATCC 8482]
 gi|254883105|ref|ZP_05255815.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319643625|ref|ZP_07998245.1| hypothetical protein HMPREF9011_03847 [Bacteroides sp. 3_1_40A]
 gi|149933048|gb|ABR39746.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
 gi|254835898|gb|EET16207.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317384794|gb|EFV65753.1| hypothetical protein HMPREF9011_03847 [Bacteroides sp. 3_1_40A]
          Length = 181

 Score =  244 bits (623), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 76/208 (36%), Positives = 107/208 (51%), Gaps = 28/208 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        +G
Sbjct: 1   MRRINEIFYSLQGEGYHTGIPAVFVRFSGCNL-----------RCPFCDTQH-----EEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + + +   +       +   +  +LTGGEP L +D  L+ AL+  G  + +ETNGT 
Sbjct: 45  TLMSDEDIVMEV------AKYSTQVVILTGGEPGLWIDEKLVDALHHEGKYVCIETNGTC 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+ IDW+  SPK G  + +    E+K+V+   +VS   Y+      + LQP       
Sbjct: 99  LLPENIDWVTCSPKEGAKINLDRIDEVKVVYVGQDVS--AYLDLSASHYFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT   I+Y  Q+P+WRLS+QTHK + I
Sbjct: 153 ANTEEVIAYILQHPEWRLSLQTHKLLQI 180


>gi|224026000|ref|ZP_03644366.1| hypothetical protein BACCOPRO_02751 [Bacteroides coprophilus DSM
           18228]
 gi|224019236|gb|EEF77234.1| hypothetical protein BACCOPRO_02751 [Bacteroides coprophilus DSM
           18228]
          Length = 181

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/208 (38%), Positives = 108/208 (51%), Gaps = 28/208 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG HAG  AVF RFSGCNL           +C FCDT        +G
Sbjct: 1   MKKINEIFYSLQGEGYHAGTPAVFVRFSGCNL-----------KCDFCDTRH-----EEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                  +   +E+         R  +LTGGEP L +D  L+ AL+  G  + +ETNGT 
Sbjct: 45  TEMENGDIVKAVEQ------YPCRMVILTGGEPGLWIDSALVDALHASGRYVCIETNGTC 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+ IDW+  SPK G  LK+    E+K+V+   +VS    +      + LQP       
Sbjct: 99  LLPENIDWVTCSPKQGTSLKVAHVDEVKVVYLGQDVS--ACLDIPARHYFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +NT+  I+Y  Q+P WRLS+QTHK I I
Sbjct: 153 QNTDEVIAYIKQHPVWRLSLQTHKLINI 180


>gi|322831395|ref|YP_004211422.1| Radical SAM domain protein [Rahnella sp. Y9602]
 gi|321166596|gb|ADW72295.1| Radical SAM domain protein [Rahnella sp. Y9602]
          Length = 223

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 95/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFETLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWDKIADRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +    G    +QL ++I +Q        R+ V+TGGEP +     L   
Sbjct: 52  VDMQRILVKTEESDAWGNATSEQLLEVIAQQG----YTARHVVITGGEPCIYDLTELTSL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L K GF   +ET+GT E    +  W+ VSPK             +K   E+K        
Sbjct: 108 LEKSGFSCQIETSGTHEVRCSVNTWVTVSPKVNMRGGYDILPQALKRADEVKHPVARQRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++   E          +LQP+     EE T L I+ C     WRLS+QTHK++ I
Sbjct: 168 IDALDALLETLTDSKARIIALQPISQK--EEATRLCIATCIAR-NWRLSMQTHKYLNI 222


>gi|329961992|ref|ZP_08300003.1| radical SAM domain protein [Bacteroides fluxus YIT 12057]
 gi|328530640|gb|EGF57498.1| radical SAM domain protein [Bacteroides fluxus YIT 12057]
          Length = 181

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 76/209 (36%), Positives = 104/209 (49%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        +G
Sbjct: 1   MRKINEIFYSLQGEGFHTGTPAVFIRFSGCNL-----------KCSFCDTQH-----EEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + D++ + +      G+      +LTGGEP L +D   +  L++ G  + +ETNGT 
Sbjct: 45  CLMSDDEIMEEV------GKYPAATVILTGGEPSLWIDGEFVDRLHRAGKYVCIETNGTR 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G  L I    E+K+V+   +++   Y       F LQP       
Sbjct: 99  LLPGNIDWVTCSPKQGTRLGIARMDEVKVVYEGQDIT--GYEQLPAAHFFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            N    +    ++PKWRLS+QTHK I IR
Sbjct: 153 NNIGETVDCVMRHPKWRLSLQTHKLIDIR 181


>gi|325299596|ref|YP_004259513.1| Radical SAM domain-containing protein [Bacteroides salanitronis DSM
           18170]
 gi|324319149|gb|ADY37040.1| Radical SAM domain protein [Bacteroides salanitronis DSM 18170]
          Length = 181

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/208 (38%), Positives = 113/208 (54%), Gaps = 28/208 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG HAG  AVF RFSGCNL           +C FCDT         G
Sbjct: 1   MRKINEIFYSLQGEGAHAGTPAVFVRFSGCNL-----------KCIFCDTSH-----ESG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                +++ + +       +   R  ++TGGEP L +D  L+  L+K G  +AVETNGT 
Sbjct: 45  TEMGDEEIIEEV------CKYPCRMVIMTGGEPGLWIDDALVDLLHKAGKYVAVETNGTQ 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+ +DW+  SPK G  L+++   E+K+V+   +VSP  Y+  + +   LQP       
Sbjct: 99  VLPEAVDWVTCSPKEGTVLRVRHIDEVKVVYIGQDVSP--YLLIEAKEHFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +NT   I Y  ++P+WRLS+QTHK I I
Sbjct: 153 QNTEEVIEYIKKHPQWRLSLQTHKLINI 180


>gi|237708545|ref|ZP_04539026.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|265751292|ref|ZP_06087355.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229457474|gb|EEO63195.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263238188|gb|EEZ23638.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 181

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 76/208 (36%), Positives = 107/208 (51%), Gaps = 28/208 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        +G
Sbjct: 1   MRRINEIFYSLQGEGYHTGIPAVFVRFSGCNL-----------RCPFCDTQH-----EEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + + +A  +       +   +  +LTGGEP L +D  L+ AL+     + +ETNGT 
Sbjct: 45  TLMSDEDIAMEV------AKYSTQVVILTGGEPGLWIDEKLVDALHHERKYVCIETNGTC 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+ IDW+  SPK G  + +    E+K+V+   +VS   Y+      + LQP       
Sbjct: 99  RLPENIDWVTCSPKEGAKINLDRIDEVKVVYVGQDVS--AYLDLSASHYFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT   I+Y  Q+P+WRLS+QTHK + I
Sbjct: 153 ANTEEVIAYILQHPEWRLSLQTHKLLQI 180


>gi|198276623|ref|ZP_03209154.1| hypothetical protein BACPLE_02819 [Bacteroides plebeius DSM 17135]
 gi|198270148|gb|EDY94418.1| hypothetical protein BACPLE_02819 [Bacteroides plebeius DSM 17135]
          Length = 181

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 82/208 (39%), Positives = 110/208 (52%), Gaps = 28/208 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        +G
Sbjct: 1   MKKINEIFYSLQGEGFHVGTPAVFVRFSGCNL-----------KCEFCDT-----HHEEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + +++ + +       +   +  +LTGGEP L VD  LI AL+K G  I +ETNGT 
Sbjct: 45  VMMSDEEIVEKV------CQYPCKTVILTGGEPGLWVDEDLIAALHKAGKYICIETNGTC 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+ IDW+  SPK G  L++    E+K+VF   +VSP   +   F  + LQP       
Sbjct: 99  VLPESIDWVTCSPKLGAPLRVNRIDEVKVVFLGQDVSPYLELKASF--YFLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT   + Y   +P+WRLS+QTHK I I
Sbjct: 153 RNTAEVVEYIKSHPQWRLSLQTHKLIDI 180


>gi|268315892|ref|YP_003289611.1| queuosine biosynthesis protein QueE [Rhodothermus marinus DSM 4252]
 gi|262333426|gb|ACY47223.1| queuosine biosynthesis protein QueE [Rhodothermus marinus DSM 4252]
          Length = 233

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 101/241 (41%), Positives = 128/241 (53%), Gaps = 40/241 (16%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL------SAQC-RFCDTD 53
           M+ Y +KEI+ TLQGEG  AGR AVF RF GCNLWSGR++DR        A C R+CDTD
Sbjct: 1   MRSYRVKEIWKTLQGEGFFAGRPAVFVRFVGCNLWSGRDEDRARDARRTGADCPRWCDTD 60

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
           F   +      Y  D+L   ++E         ++CVLTGGEPLLQ+D  L++AL   G+ 
Sbjct: 61  F---RKEGSRAYTADELVAAMQEVG----GPIQFCVLTGGEPLLQLDAALMRALKAAGYF 113

Query: 114 IAVETNGTIEPPQ-----------GIDWICVSPKAGCD-LKIKGGQELKLVFPQVNVSPE 161
           +A+ETNGTI   +             DWI  SPK   D L ++   ELKLV P  +  PE
Sbjct: 114 VAIETNGTISLREACTDPETGQVVAPDWIVCSPKLPEDRLALEYFDELKLVVP--DYRPE 171

Query: 162 NYIGFD------------FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
            Y  F                  LQP DGP L E    A+     +P WR+SVQTHK +G
Sbjct: 172 QYARFARRARPHRVGGRRIPLLWLQPEDGPRLAEAQRCAVELALAHPDWRVSVQTHKILG 231

Query: 210 I 210
           +
Sbjct: 232 V 232


>gi|260599124|ref|YP_003211695.1| hypothetical protein CTU_33320 [Cronobacter turicensis z3032]
 gi|260218301|emb|CBA33277.1| Uncharacterized protein ygcF [Cronobacter turicensis z3032]
          Length = 223

 Score =  241 bits (615), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 97/238 (40%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWETLADRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + ++L   IE Q        R+ V+TGGEP +   +PL + 
Sbjct: 52  VSLFSIIAKTKESDKWGSASPEELLAAIERQ----AYTARHVVITGGEPCIHDLLPLTEL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155
           L   G+   +ET+GT E       W+ VSPK          D  +    E+K    +   
Sbjct: 108 LEAHGYSCQIETSGTHEVRCTTGTWVTVSPKVNMRGGYEVLDQALMRADEIKHPVGRMRD 167

Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    E       ER    +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLARLHDERQRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|242238307|ref|YP_002986488.1| hypothetical protein Dd703_0856 [Dickeya dadantii Ech703]
 gi|242130364|gb|ACS84666.1| conserved hypothetical protein [Dickeya dadantii Ech703]
          Length = 224

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 69/237 (29%), Positives = 97/237 (40%), Gaps = 41/237 (17%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y I E+F TLQGEG   G  AVF R  GC +            C +CDT     +  
Sbjct: 1   MPQYPINEMFQTLQGEGYFTGVPAVFIRLQGCPV-----------GCSWCDTKHTWEKLA 49

Query: 61  KGGRYNVDQLADLIEEQWITG-------------EKEGRYCVLTGGEPLLQVDVPLIQAL 107
           +      + LA   E                       R+ V+TGGEP +    PL  AL
Sbjct: 50  ERQSSLAEVLAKTAESDVWGAADATEILSSMRELGYTARHVVITGGEPCIHDLTPLTLAL 109

Query: 108 NKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCDL-------KIKGGQELKLVFPQ---V 156
            ++GF   +ET+GT +       W+ VSPK             ++   E+K    +   V
Sbjct: 110 EQQGFSTQIETSGTHDVRCSPATWVTVSPKVNMRGGMAVLLSALQRADEIKHPVARERDV 169

Query: 157 NVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +         D ++    +LQP+     EE T L I+ C     WRLS+QTHK++ I
Sbjct: 170 DALDALLARLDDDKSRVVALQPVSQK--EEATRLCIATCIAR-NWRLSMQTHKYLNI 223


>gi|156932742|ref|YP_001436658.1| hypothetical protein ESA_00531 [Cronobacter sakazakii ATCC BAA-894]
 gi|156530996|gb|ABU75822.1| hypothetical protein ESA_00531 [Cronobacter sakazakii ATCC BAA-894]
          Length = 223

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 96/238 (40%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWETLADRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L   IE Q        R+ V+TGGEP +   +PL + 
Sbjct: 52  VSLFSIIAKTKESDKWGAASPEDLLAAIERQ----AYTARHVVITGGEPCIHDLLPLTEL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155
           L   G+   +ET+GT E       W+ VSPK          D  +    E+K    +   
Sbjct: 108 LEAHGYSCQIETSGTHEVRCTTGTWVTVSPKVNMRGGYEVLDQALMRADEIKHPVGRMRD 167

Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    E       ER    +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLARLHDERQRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|152971643|ref|YP_001336752.1| coenzyme PQQ synthesis protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|262041519|ref|ZP_06014716.1| radical SAM domain protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330012239|ref|ZP_08307334.1| radical SAM domain protein [Klebsiella sp. MS 92-3]
 gi|150956492|gb|ABR78522.1| putative coenzyme PQQ synthesis protein, nitrogenase
           iron-molybdenum domain [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|259041080|gb|EEW42154.1| radical SAM domain protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328533879|gb|EGF60548.1| radical SAM domain protein [Klebsiella sp. MS 92-3]
          Length = 225

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 96/242 (39%), Gaps = 50/242 (20%)

Query: 1   MKL-YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-- 57
           M + Y I E+F TLQGEG   G  A+F R  GC +            C +CDT       
Sbjct: 1   MTMQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKL 49

Query: 58  ---------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
                          +  K G  + + L  +I  Q  T     R+ V+TGGEP +    P
Sbjct: 50  ADREVSLFSILAKTKESDKWGPASSEDLLAIIGRQGWTA----RHVVITGGEPCIHDLTP 105

Query: 103 LIQALNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL--- 151
           L   L + GF   +ET+GT E       W+ VSPK             ++   E+K    
Sbjct: 106 LTSLLEQNGFSCQIETSGTHEVRCSPNTWVTVSPKVNMRGGYDVLSQALQRADEIKHPVG 165

Query: 152 ---VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                  ++   E          +LQP+     E+ T L I  C     WRLS+QTHK++
Sbjct: 166 RVRDIEALDELLETLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYL 222

Query: 209 GI 210
            I
Sbjct: 223 NI 224


>gi|258647408|ref|ZP_05734877.1| NrdG protein [Prevotella tannerae ATCC 51259]
 gi|260852776|gb|EEX72645.1| NrdG protein [Prevotella tannerae ATCC 51259]
          Length = 189

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 80/213 (37%), Positives = 109/213 (51%), Gaps = 28/213 (13%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  + I EIF +LQGEG ++G  ++F RFSGCNL            C FCDT        
Sbjct: 1   MTRFKINEIFYSLQGEGFYSGIASIFIRFSGCNL-----------SCSFCDTQH-----E 44

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
            G     +Q+ D +           ++ VLTGGEP L V   LI  L+  G  + +ETNG
Sbjct: 45  TGELMTQEQILDQVTR------FPAKHVVLTGGEPSLFVTKELIDGLHAAGKYVCIETNG 98

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
               P+GIDW+ +SPK    + +K   ELK+VF     +P + I      + +QP D   
Sbjct: 99  LHALPEGIDWVTLSPKTAQTI-LKTCNELKVVFTDDTFNPHDEIK--AAHYFIQPCDMGN 155

Query: 181 LEENTNL---AISYCFQNPKWRLSVQTHKFIGI 210
             +N  +    ISY  +NP+WRLS+QTHK IGI
Sbjct: 156 SIKNNRILASCISYVKENPRWRLSLQTHKMIGI 188


>gi|307132359|ref|YP_003884375.1| hypothetical protein Dda3937_00204 [Dickeya dadantii 3937]
 gi|306529888|gb|ADM99818.1| conserved protein [Dickeya dadantii 3937]
          Length = 223

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 69/237 (29%), Positives = 101/237 (42%), Gaps = 43/237 (18%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
            LY I E+F TLQGEG   G  AVF R  GC +            C +CDT         
Sbjct: 1   MLYPINEMFQTLQGEGFFTGVPAVFIRLQGCPV-----------GCSWCDTKHTWEKRPE 49

Query: 57  ---------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
                    ++  +   ++     DLI++    G    R+ V+TGGEP +    PL QAL
Sbjct: 50  RQISLAEVLVKSGESDAWSGSSAGDLIQQIARQG-YTARHVVITGGEPCIHDLTPLTQAL 108

Query: 108 NKRGFEIAVETNGTIEPPQGID-WICVSPKAGC-------DLKIKGGQELKLVFPQ---- 155
            ++GF   +ET+GT E     + W+ VSPK          D  ++   E+K    +    
Sbjct: 109 EQQGFSTQIETSGTHEVRCSPNCWVTVSPKVNMRGGLAVLDQALQRANEIKHPVARERDI 168

Query: 156 --VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             ++              +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 169 EALDALLARLDDDKARVVALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|238758186|ref|ZP_04619365.1| hypothetical protein yaldo0001_25950 [Yersinia aldovae ATCC 35236]
 gi|238703516|gb|EEP96054.1| hypothetical protein yaldo0001_25950 [Yersinia aldovae ATCC 35236]
          Length = 225

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 95/242 (39%), Gaps = 50/242 (20%)

Query: 1   MKL-YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-- 57
           M++ Y I E+F TLQGEG   G  A+F R  GC +            C +CDT       
Sbjct: 1   MQMQYPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKE 49

Query: 58  ---------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
                          +    G  +  QL DL  +Q        R+ V+TGGEP +    P
Sbjct: 50  ADREVDMQRIMVKTAESDAWGSASEQQLLDLFIQQG----YTARHVVITGGEPAIYDLFP 105

Query: 103 LIQALNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL--- 151
           L   L + G+   +ET+GT E       W+ VSPK             ++   E+K    
Sbjct: 106 LTSQLEQAGYRCQIETSGTHEVRCSATTWVTVSPKVNMRGGLKVLPQALERADEIKHPVG 165

Query: 152 ---VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                  +    E          +LQP+     +E T L I  C     WRLS+QTHK++
Sbjct: 166 RLRDIEALEALLETLTDDKKRIIALQPISQK--DEATKLCIETCIAR-NWRLSMQTHKYL 222

Query: 209 GI 210
            I
Sbjct: 223 NI 224


>gi|270264011|ref|ZP_06192279.1| hypothetical protein SOD_f02250 [Serratia odorifera 4Rx13]
 gi|270042204|gb|EFA15300.1| hypothetical protein SOD_f02250 [Serratia odorifera 4Rx13]
          Length = 223

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 95/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGFFTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKEANRE 51

Query: 57  ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +    G  + +QL  ++ +Q        R+ V+TGGEP +    PL Q 
Sbjct: 52  VDMQRILVKTEESDAWGSASAEQLLAVMRQQG----YTARHVVITGGEPCIYDLTPLTQL 107

Query: 107 LNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKL------V 152
           L + G+   +ET+GT E       W+ VSPK          D  ++   E+K        
Sbjct: 108 LEENGYGCQIETSGTHEIQCSATTWVTVSPKVNMRGGMKVLDQALQRADEVKHPVGRERD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++              +LQP+     EE T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDALLATLHDEKPRIIALQPISQK--EEATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|260174975|ref|ZP_05761387.1| hypothetical protein BacD2_24170 [Bacteroides sp. D2]
 gi|315923210|ref|ZP_07919450.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697085|gb|EFS33920.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 181

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 75/209 (35%), Positives = 107/209 (51%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF ++QGEG   G  AVF RFSGCNL           +C FCDT         G
Sbjct: 1   MKKINEIFYSIQGEGYRTGTPAVFVRFSGCNL-----------KCPFCDTQHSS-----G 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + +++   +           R+ VLTGGEP LQVD   I  L++ G  + +ETNGT+
Sbjct: 45  REMSDEEIIKEV------CFYPTRFVVLTGGEPGLQVDQEFINKLHQAGKFVQIETNGTV 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P GIDWI  SPK G  + +    E+K+V+   ++S   Y       + LQP       
Sbjct: 99  PLPIGIDWITCSPKEGSKVFVVNPHEIKVVYTGQDLS--TYEAMTAAVYYLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT   I+Y  ++PKW+LS+QT K + ++
Sbjct: 153 QNTEEVINYVKEHPKWKLSLQTQKILNVQ 181


>gi|261822768|ref|YP_003260874.1| hypothetical protein Pecwa_3531 [Pectobacterium wasabiae WPP163]
 gi|261606781|gb|ACX89267.1| conserved hypothetical protein [Pectobacterium wasabiae WPP163]
          Length = 223

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 98/238 (41%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  AVF R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAVFVRLQGCPV-----------GCSWCDTKHTWDKLAERE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +    G  + D +  L+ +Q        R+ V+TGGEP +    PL   
Sbjct: 52  TSLDLVLVKTEESDAWGAASADDILALMVQQG----YTARHIVITGGEPCIHDLAPLTLQ 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155
           L K+GF   +ET+GT +       W+ VSPK          D  ++   E+K    +   
Sbjct: 108 LEKQGFSCQIETSGTHDVRCSPKTWVTVSPKVNMRGGMKVLDQALQRADEIKHPVARERD 167

Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +          D ++    +LQP+     E+ T L I+ C     WRLS+QTHK++ I
Sbjct: 168 IEALDALLARLDDDKPRIVALQPISQK--EDATKLCIATCIAR-NWRLSMQTHKYLNI 222


>gi|227329734|ref|ZP_03833758.1| hypothetical protein PcarcW_21303 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 223

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 97/238 (40%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  AVF R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAVFVRLQGCPV-----------GCSWCDTKHTWDKLAERE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +    G  + D +  L+ ++        R+ V+TGGEP +    PL   
Sbjct: 52  TSLDQVLVKTEESDAWGAASADDILALMAQEG----YTARHIVITGGEPCIHDLAPLTLQ 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155
           L K+GF   +ET+GT +       W+ VSPK          D  ++   E+K    +   
Sbjct: 108 LEKQGFSCQIETSGTHDVRCSPKTWVTVSPKVNMRGGMKVLDQALQRADEIKHPVARERD 167

Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +          D ++    +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDALLARLDDDKPRIVALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|315607677|ref|ZP_07882671.1| GntS protein [Prevotella buccae ATCC 33574]
 gi|315250613|gb|EFU30608.1| GntS protein [Prevotella buccae ATCC 33574]
          Length = 210

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 89/226 (39%), Positives = 115/226 (50%), Gaps = 35/226 (15%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK Y I EIF +LQGEG + GR AVF RFSGCNL            C FCDTDF      
Sbjct: 5   MKRYRINEIFYSLQGEGRNTGRAAVFVRFSGCNL-----------ACSFCDTDFRAY--- 50

Query: 61  KGGRYNVDQLADLIE-----------EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
                  D++ + ++            + +   +     VLTGGEP LQVD  LI AL+ 
Sbjct: 51  --REMTSDEVVNTVKGILPSFVDNRSGEGVGTARSSVLVVLTGGEPTLQVDFDLIDALHH 108

Query: 110 RGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
            GF E+A+E+NGT EPP  +DW+ VSPK    +      ELK +F +   + +  I  DF
Sbjct: 109 AGFPEVAMESNGTKEPPPNLDWLTVSPKEQVSVN--RCNELKCLFDESGRADDCGIRADF 166

Query: 169 ERFSLQPM---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             + LQP    D     E       Y  Q+PKW+LS+QTHK IG +
Sbjct: 167 --YYLQPCDTGDPVRNAEIIAACTEYIKQHPKWQLSLQTHKLIGFK 210


>gi|295097341|emb|CBK86431.1| Organic radical activating enzymes [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 223

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 98/238 (41%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q  T     R+ V+TGGEP +   +PL + 
Sbjct: 52  VSLFSILAKTKESDKWGAGSAEDLLAIISRQGWTA----RHVVITGGEPCIHDLMPLTEL 107

Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155
           L K G+   +ET+GT E       W+ VSPK             ++   E+K    +   
Sbjct: 108 LEKNGYSCQIETSGTHEVRCSHSTWVTVSPKVNMRGGYDVLSQALERADEIKHPVGRVRD 167

Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    E       E+    +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLTDEKQRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|237729740|ref|ZP_04560221.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908346|gb|EEH94264.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 223

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 96/238 (40%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLEDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLYSILAKTKESDKWGAASSEDLLAVISRQG----YTARHVVITGGEPCIHDLMPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155
           L K GF   +ET+GT E       W+ VSPK             ++   E+K    +   
Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRD 167

Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    E       ++    +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222


>gi|227114089|ref|ZP_03827745.1| hypothetical protein PcarbP_14034 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 223

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 98/238 (41%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  AVF R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAVFVRLQGCPV-----------GCSWCDTKHTWDKLAERE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +    G  + D +  L+ +Q        R+ V+TGGEP +    PL   
Sbjct: 52  TSLDQVLVKTEESDAWGAASADDILALMVQQG----YTARHIVITGGEPCIHDLAPLTLQ 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155
           L K+GF   +ET+GT +       W+ VSPK          D  ++   E+K    +   
Sbjct: 108 LEKQGFSCQIETSGTHDVRCSPKTWVTVSPKVNMRGGMKVLDQALQRADEIKHPVARERD 167

Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +          D ++    +LQP+     ++ T L I+ C     WRLS+QTHK++ I
Sbjct: 168 IEALDALLARLDDDKPRIVALQPISQK--DDATKLCIATCIAR-NWRLSMQTHKYLNI 222


>gi|253689736|ref|YP_003018926.1| hypothetical protein PC1_3374 [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756314|gb|ACT14390.1| conserved hypothetical protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 223

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 98/238 (41%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  AVF R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAVFVRLQGCPV-----------GCSWCDTKHTWDKLAERE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +    G  + D +  L+ +Q        R+ V+TGGEP +    PL   
Sbjct: 52  TSLDQVLVKTEESDAWGAASADDILALMTQQG----YTARHIVITGGEPCIHDLTPLTLQ 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155
           L K+GF   +ET+GT +       W+ VSPK          D  ++   E+K    +   
Sbjct: 108 LEKQGFSCQIETSGTHDVRCSPKTWVTVSPKVNMRGGMKVLDQALQRADEIKHPVARERD 167

Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +          D ++    +LQP+     ++ T L I+ C     WRLS+QTHK++ I
Sbjct: 168 IEALDALLARLDDDKPRIVALQPISQK--DDATKLCIATCIAR-NWRLSMQTHKYLNI 222


>gi|157369053|ref|YP_001477042.1| radical SAM domain-containing protein [Serratia proteamaculans 568]
 gi|157320817|gb|ABV39914.1| Radical SAM domain protein [Serratia proteamaculans 568]
          Length = 223

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 94/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGFFTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKEANRE 51

Query: 57  ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +    G  + +QL  +I +Q        R+ V+TGGEP +    PL + 
Sbjct: 52  VDMQRILVKTEESDAWGSASAEQLLAVIRQQG----YTARHVVITGGEPCIYDLTPLTEL 107

Query: 107 LNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKL------V 152
           L + G+   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEEHGYGCQIETSGTHEIQCSAKTWVTVSPKVNMRGGMKVLSQALQRADEVKHPVGRERD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++              +LQP+     EE T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDALLATLHDEKPRIIALQPISQK--EEATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|50122475|ref|YP_051642.1| hypothetical protein ECA3554 [Pectobacterium atrosepticum SCRI1043]
 gi|49613001|emb|CAG76452.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 223

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 98/238 (41%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  AVF R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAVFVRLQGCPV-----------GCSWCDTKHTWDKLAERE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +    G  + D +  L+ +Q        R+ V+TGGEP +    PL   
Sbjct: 52  TSLDQVLVKTEESDAWGAASADDILALMAQQG----YTARHIVITGGEPCIHDLAPLTLQ 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155
           L K+GF   +ET+GT +       W+ VSPK          D  ++   E+K    +   
Sbjct: 108 LEKQGFSCQIETSGTHDVRCSPKTWVTVSPKVNMRGGMKVLDQALQRADEIKHPVARERD 167

Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +          D ++    +LQP+     ++ T L I+ C     WRLS+QTHK++ I
Sbjct: 168 IEALDTLLARLDDDKPRIVALQPISQK--DDATKLCIATCIAR-NWRLSMQTHKYLNI 222


>gi|288924671|ref|ZP_06418608.1| radical SAM [Prevotella buccae D17]
 gi|288338458|gb|EFC76807.1| radical SAM [Prevotella buccae D17]
          Length = 206

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 89/226 (39%), Positives = 115/226 (50%), Gaps = 35/226 (15%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK Y I EIF +LQGEG + GR AVF RFSGCNL            C FCDTDF      
Sbjct: 1   MKRYRINEIFYSLQGEGRNTGRAAVFVRFSGCNL-----------ACSFCDTDFRAY--- 46

Query: 61  KGGRYNVDQLADLIE-----------EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
                  D++ + ++            + +   +     VLTGGEP LQVD  LI AL+ 
Sbjct: 47  --REMTSDEVVNTVKGILPSFVDNRSGEGVGTARSSVLVVLTGGEPTLQVDFDLIDALHH 104

Query: 110 RGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
            GF E+A+E+NGT EPP  +DW+ VSPK    +      ELK +F +   + +  I  DF
Sbjct: 105 AGFPEVAMESNGTKEPPPNLDWLTVSPKEQVSVN--RCNELKCLFDESGRADDCGIRADF 162

Query: 169 ERFSLQPM---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             + LQP    D     E       Y  Q+PKW+LS+QTHK IG +
Sbjct: 163 --YYLQPCDTGDPVRNAEIIAACTEYIKQHPKWQLSLQTHKLIGFK 206


>gi|296104445|ref|YP_003614591.1| radical SAM domain-containing protein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058904|gb|ADF63642.1| radical SAM domain-containing protein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 223

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 97/238 (40%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q  T     R+ V+TGGEP +    PL + 
Sbjct: 52  VSLFSVLAKTKESDKWGAGSAEDLLAIIGRQGWTA----RHVVITGGEPCIHDLTPLTEL 107

Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155
           L K G+   +ET+GT E       W+ VSPK             ++   E+K    +   
Sbjct: 108 LEKNGYSCQIETSGTHEVRCSHTTWVTVSPKVNMRGGYDVLSQALERADEIKHPVGRVRD 167

Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    E       E+    +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLTDEKQRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|16761723|ref|NP_457340.1| hypothetical protein STY3080 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16766257|ref|NP_461872.1| hypothetical protein STM2951 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29143207|ref|NP_806549.1| hypothetical protein t2852 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|161615872|ref|YP_001589837.1| hypothetical protein SPAB_03664 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167550190|ref|ZP_02343947.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167993197|ref|ZP_02574292.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168231033|ref|ZP_02656091.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168242700|ref|ZP_02667632.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168261911|ref|ZP_02683884.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168463900|ref|ZP_02697817.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168820338|ref|ZP_02832338.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194443979|ref|YP_002042196.1| hypothetical protein SNSL254_A3167 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194448254|ref|YP_002046911.1| radical SAM domain-containing protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194472830|ref|ZP_03078814.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197250818|ref|YP_002147853.1| radical SAM domain-containing protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197261663|ref|ZP_03161737.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198243481|ref|YP_002216919.1| radical SAM domain-containing protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200387574|ref|ZP_03214186.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205353891|ref|YP_002227692.1| hypothetical protein SG2855 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858211|ref|YP_002244862.1| hypothetical protein SEN2790 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213022667|ref|ZP_03337114.1| hypothetical protein Salmonelentericaenterica_08538 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
 gi|213163461|ref|ZP_03349171.1| hypothetical protein Salmoneentericaenterica_26915 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213424925|ref|ZP_03357675.1| hypothetical protein SentesTyphi_03996 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213648292|ref|ZP_03378345.1| hypothetical protein SentesTy_13994 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213852988|ref|ZP_03382520.1| hypothetical protein SentesT_09066 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224584735|ref|YP_002638533.1| hypothetical protein SPC_3001 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238909725|ref|ZP_04653562.1| hypothetical protein SentesTe_01135 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289811290|ref|ZP_06541919.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|289829811|ref|ZP_06547326.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25511883|pir||AB0859 conserved hypothetical protein STY3080 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421502|gb|AAL21831.1| putative organic radical activating enzymes [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|16504024|emb|CAD06057.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138840|gb|AAO70409.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|161365236|gb|ABX69004.1| hypothetical protein SPAB_03664 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402642|gb|ACF62864.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194406558|gb|ACF66777.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194459194|gb|EDX48033.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|195633215|gb|EDX51629.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197214521|gb|ACH51918.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197239918|gb|EDY22538.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197937997|gb|ACH75330.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199604672|gb|EDZ03217.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205273672|emb|CAR38662.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205324832|gb|EDZ12671.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205328757|gb|EDZ15521.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205334576|gb|EDZ21340.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205338143|gb|EDZ24907.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205342895|gb|EDZ29659.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205349084|gb|EDZ35715.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206710014|emb|CAR34369.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224469262|gb|ACN47092.1| hypothetical protein SPC_3001 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261248086|emb|CBG25921.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995084|gb|ACY89969.1| hypothetical protein STM14_3556 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159510|emb|CBW19029.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913972|dbj|BAJ37946.1| hypothetical protein STMDT12_C30030 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087368|emb|CBY97133.1| probable molybdenum cofactor biosynthesis protein A [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321225630|gb|EFX50684.1| Queuosine Biosynthesis QueE Radical SAM [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323131307|gb|ADX18737.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|326624683|gb|EGE31028.1| Radical SAM domain containing protein [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326629003|gb|EGE35346.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 223

 Score =  237 bits (605), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 93/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLFSILAKTKESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L K GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++              +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|168235995|ref|ZP_02661053.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194736116|ref|YP_002115902.1| radical SAM domain-containing protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|204928010|ref|ZP_03219210.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|194711618|gb|ACF90839.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197290769|gb|EDY30123.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204322332|gb|EDZ07529.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 223

 Score =  237 bits (605), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 94/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q    +   R+ V+TGGEP +   +PL   
Sbjct: 52  VSLFSILAKTKESDKWGAASSEDLLAVINRQ----DYTARHVVITGGEPCIHDLMPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L K GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++              +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|238896239|ref|YP_002920975.1| putative coenzyme PQQ synthesis protein [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238548557|dbj|BAH64908.1| putative coenzyme PQQ synthesis protein [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 223

 Score =  237 bits (605), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 94/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q  T     R+ V+TGGEP +    PL   
Sbjct: 52  VSLFSILAKTKESDKWGPASSEDLLAIIGRQGWTA----RHVVITGGEPCIHDLTPLTSL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L + GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEQNGFSCQIETSGTHEVRCSPNTWVTVSPKVNMRGGYDVLSQALQRADEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++   E          +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLETLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222


>gi|56414895|ref|YP_151970.1| hypothetical protein SPA2807 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197363823|ref|YP_002143460.1| hypothetical protein SSPA2615 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56129152|gb|AAV78658.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197095300|emb|CAR60857.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 223

 Score =  237 bits (605), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 93/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLYSILAKIKESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L K GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++              +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|198274527|ref|ZP_03207059.1| hypothetical protein BACPLE_00675 [Bacteroides plebeius DSM 17135]
 gi|198272581|gb|EDY96850.1| hypothetical protein BACPLE_00675 [Bacteroides plebeius DSM 17135]
          Length = 181

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 70/209 (33%), Positives = 104/209 (49%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + EIF ++QGEG H G  AVF RFSGCNL           +C FCDT         G
Sbjct: 1   MKKVNEIFYSIQGEGYHTGTPAVFVRFSGCNL-----------KCPFCDTQH-----EDG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + +++   +      G+      +LTGGEP L +D   +  L++ G  + +ETNGT 
Sbjct: 45  ILMSDEEILSEV------GKYPAVMVILTGGEPSLWIDREFVDRLHRIGKYVCIETNGTR 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G +  +    E+K+V+   ++S   Y       + LQP       
Sbjct: 99  SLPNNIDWVTCSPKEGSNAIVVNPHEIKVVYTGQDLS--TYEEMTAAVYYLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT   I Y  ++PKW+LS+QT K + +R
Sbjct: 153 QNTEEVIDYIKKHPKWKLSLQTQKILNVR 181


>gi|261342207|ref|ZP_05970065.1| radical SAM domain protein [Enterobacter cancerogenus ATCC 35316]
 gi|288315541|gb|EFC54479.1| radical SAM domain protein [Enterobacter cancerogenus ATCC 35316]
          Length = 223

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 98/238 (41%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  N + L  +I  Q  T     R+ V+TGGEP +   +PL + 
Sbjct: 52  VSLFSILAKTKESDKWGAGNAEDLLAIIGRQGWTA----RHVVITGGEPCIHDLMPLTEL 107

Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155
           L K G+   +ET+GT E       W+ VSPK             ++   E+K    +   
Sbjct: 108 LEKNGYSCQIETSGTHEVRCSHTTWVTVSPKVNMRGGYDVLSQALERADEIKHPVGRVRD 167

Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    E       E+    +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLTDEKQRIIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|288933817|ref|YP_003437876.1| radical SAM protein [Klebsiella variicola At-22]
 gi|290511103|ref|ZP_06550472.1| queuosine biosynthesis protein QueE [Klebsiella sp. 1_1_55]
 gi|288888546|gb|ADC56864.1| Radical SAM domain protein [Klebsiella variicola At-22]
 gi|289776096|gb|EFD84095.1| queuosine biosynthesis protein QueE [Klebsiella sp. 1_1_55]
          Length = 223

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 94/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q  T     R+ V+TGGEP +    PL   
Sbjct: 52  VSLFSILAKTKESDKWGPASSEDLLAIIGRQGWTA----RHVVITGGEPCIHDLTPLTSL 107

Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL------V 152
           L + GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEQNGFSCQIETSGTHEVRCSHNTWVTVSPKVNMRGGYDVLSQALQRADEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++   E          +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLETLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222


>gi|304399225|ref|ZP_07381092.1| Radical SAM domain protein [Pantoea sp. aB]
 gi|304353279|gb|EFM17659.1| Radical SAM domain protein [Pantoea sp. aB]
          Length = 223

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 99/238 (41%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y I E+F TLQGEG + G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKRTDRE 51

Query: 57  ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                     ++    G  +   L + I +Q  T     R+ V+TGGEP +    PL  A
Sbjct: 52  TSLGDILIKTVESDAWGDADAATLVNAIAQQGWTA----RHVVITGGEPAIYDLRPLTTA 107

Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155
           L + GF+  +ET+GT E       W+ VSPK             +    E+K    +   
Sbjct: 108 LEQHGFQCQIETSGTHEIHCSEQTWVTVSPKVNMRGGYDVLPQALSRADEIKHPVARERD 167

Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           V+       G D  +    +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 168 VDALDLLLAGIDDTKARIIALQPISRK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|322614241|gb|EFY11173.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620945|gb|EFY17803.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624008|gb|EFY20842.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628253|gb|EFY25042.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633372|gb|EFY30114.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636051|gb|EFY32759.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639387|gb|EFY36075.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322643751|gb|EFY40302.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648214|gb|EFY44680.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656959|gb|EFY53244.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658025|gb|EFY54293.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664126|gb|EFY60325.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322673792|gb|EFY69891.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322677866|gb|EFY73929.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681040|gb|EFY77073.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685637|gb|EFY81631.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323194776|gb|EFZ79963.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323200478|gb|EFZ85557.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323205060|gb|EFZ90043.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207739|gb|EFZ92685.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323214808|gb|EFZ99556.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222537|gb|EGA06902.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323226417|gb|EGA10625.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230704|gb|EGA14822.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323234945|gb|EGA19031.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238984|gb|EGA23034.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244658|gb|EGA28664.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247274|gb|EGA31240.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251806|gb|EGA35671.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257493|gb|EGA41183.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263278|gb|EGA46815.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267530|gb|EGA51014.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272719|gb|EGA56125.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 223

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 93/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLFSILAKTKESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L K GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEKSGFSCQIETSGTHEVCCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++              +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|283786677|ref|YP_003366542.1| hypothetical protein ROD_30371 [Citrobacter rodentium ICC168]
 gi|282950131|emb|CBG89767.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
          Length = 223

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 93/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLEDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLFSILAKTKESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLTAL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L K GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDILSQALERANEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++              +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|62181454|ref|YP_217871.1| hypothetical protein SC2884 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62129087|gb|AAX66790.1| putative Organic radical activating enzymes [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322715938|gb|EFZ07509.1| Radical SAM [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 223

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 92/238 (38%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLFSILAKTKESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L K GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              +               +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALGELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|191166820|ref|ZP_03028646.1| conserved hypothetical protein [Escherichia coli B7A]
 gi|190903191|gb|EDV62914.1| conserved hypothetical protein [Escherichia coli B7A]
          Length = 223

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLFSILAKTKESDKWGSASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L K GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LKKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++              +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|188534838|ref|YP_001908635.1| hypothetical protein ETA_27180 [Erwinia tasmaniensis Et1/99]
 gi|188029880|emb|CAO97764.1| Conserved hypothetical protein [Erwinia tasmaniensis Et1/99]
          Length = 223

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 96/238 (40%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y I E+F TLQGEG + G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGVYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLANRE 51

Query: 57  ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                     ++    G  +   L + I     T     ++ V+TGGEP +   VPL  A
Sbjct: 52  TSLGDILLKTVETDAWGAADAPALLETIRRHGWTA----KHIVVTGGEPCIHDLVPLTAA 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL-VFPQVN 157
           L   GF   +ET+GT E       W+ VSPK          +  +    E+K  V  Q +
Sbjct: 108 LQDAGFSCQIETSGTHEVSCTAQTWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQRD 167

Query: 158 VSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           V   + +            +LQP+      + T L I  C     WRLS+QTHK++ I
Sbjct: 168 VEALDELLGTLNDNKARIIALQPISQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222


>gi|206580457|ref|YP_002236871.1| radical SAM domain protein [Klebsiella pneumoniae 342]
 gi|206569515|gb|ACI11291.1| radical SAM domain protein [Klebsiella pneumoniae 342]
          Length = 223

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 94/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q  T     R+ V+TGGEP +    PL   
Sbjct: 52  VSLFSILAKTKESDKWGPASSEDLLAIIGRQGWTA----RHVVITGGEPCIHDLTPLTSL 107

Query: 107 LNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKL------V 152
           L + GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEQNGFSCQIETSGTHEVCCSHNTWVTVSPKVNMRGGYDVLSQALQRADEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++   E          +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLETLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222


>gi|74313345|ref|YP_311764.1| hypothetical protein SSON_2930 [Shigella sonnei Ss046]
 gi|73856822|gb|AAZ89529.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|323167196|gb|EFZ52913.1| radical SAM superfamily protein [Shigella sonnei 53G]
          Length = 223

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLFSILAKTKESDKWGAASSEDLLAVISRQG----YTARHVVITGGEPCIHDLLPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L K GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++              +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|26249173|ref|NP_755213.1| hypothetical protein c3335 [Escherichia coli CFT073]
 gi|91212137|ref|YP_542123.1| hypothetical protein UTI89_C3140 [Escherichia coli UTI89]
 gi|110642915|ref|YP_670645.1| hypothetical protein ECP_2755 [Escherichia coli 536]
 gi|117625003|ref|YP_853991.1| hypothetical protein APECO1_3756 [Escherichia coli APEC O1]
 gi|191171179|ref|ZP_03032729.1| conserved hypothetical protein [Escherichia coli F11]
 gi|215488094|ref|YP_002330525.1| hypothetical protein E2348C_3044 [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218559762|ref|YP_002392675.1| hypothetical protein ECS88_3041 [Escherichia coli S88]
 gi|218690896|ref|YP_002399108.1| hypothetical protein ECED1_3225 [Escherichia coli ED1a]
 gi|218701268|ref|YP_002408897.1| hypothetical protein ECIAI39_2968 [Escherichia coli IAI39]
 gi|227888313|ref|ZP_04006118.1| radical SAM domain protein [Escherichia coli 83972]
 gi|237706601|ref|ZP_04537082.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|300976266|ref|ZP_07173363.1| radical SAM domain protein [Escherichia coli MS 200-1]
 gi|300976766|ref|ZP_07173583.1| radical SAM domain protein [Escherichia coli MS 45-1]
 gi|301027570|ref|ZP_07190901.1| radical SAM domain protein [Escherichia coli MS 69-1]
 gi|301049468|ref|ZP_07196426.1| radical SAM domain protein [Escherichia coli MS 185-1]
 gi|306812345|ref|ZP_07446543.1| hypothetical protein ECNC101_10539 [Escherichia coli NC101]
 gi|312964958|ref|ZP_07779198.1| uncharacterized protein ygcF [Escherichia coli 2362-75]
 gi|331658886|ref|ZP_08359828.1| putative Organic radical activating enzyme [Escherichia coli TA206]
 gi|26109580|gb|AAN81783.1|AE016765_185 Hypothetical protein ygcF [Escherichia coli CFT073]
 gi|50250397|emb|CAG25841.1| hypothetical protein ygcF [Escherichia coli]
 gi|91073711|gb|ABE08592.1| hypothetical protein YgcF [Escherichia coli UTI89]
 gi|110344507|gb|ABG70744.1| hypothetical protein YgcF [Escherichia coli 536]
 gi|115514127|gb|ABJ02202.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|190908479|gb|EDV68068.1| conserved hypothetical protein [Escherichia coli F11]
 gi|215266166|emb|CAS10592.1| predicted protein [Escherichia coli O127:H6 str. E2348/69]
 gi|218366531|emb|CAR04284.1| conserved hypothetical protein [Escherichia coli S88]
 gi|218371254|emb|CAR19087.1| conserved hypothetical protein [Escherichia coli IAI39]
 gi|218428460|emb|CAR09385.2| conserved hypothetical protein [Escherichia coli ED1a]
 gi|222034465|emb|CAP77207.1| Uncharacterized protein ygcF [Escherichia coli LF82]
 gi|226899641|gb|EEH85900.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227834582|gb|EEJ45048.1| radical SAM domain protein [Escherichia coli 83972]
 gi|281179780|dbj|BAI56110.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|294493229|gb|ADE91985.1| conserved hypothetical protein [Escherichia coli IHE3034]
 gi|300298699|gb|EFJ55084.1| radical SAM domain protein [Escherichia coli MS 185-1]
 gi|300308611|gb|EFJ63131.1| radical SAM domain protein [Escherichia coli MS 200-1]
 gi|300394899|gb|EFJ78437.1| radical SAM domain protein [Escherichia coli MS 69-1]
 gi|300409952|gb|EFJ93490.1| radical SAM domain protein [Escherichia coli MS 45-1]
 gi|305854383|gb|EFM54821.1| hypothetical protein ECNC101_10539 [Escherichia coli NC101]
 gi|307554747|gb|ADN47522.1| conserved hypothetical protein [Escherichia coli ABU 83972]
 gi|307625657|gb|ADN69961.1| hypothetical protein UM146_02700 [Escherichia coli UM146]
 gi|312290514|gb|EFR18394.1| uncharacterized protein ygcF [Escherichia coli 2362-75]
 gi|312947301|gb|ADR28128.1| hypothetical protein NRG857_13575 [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315289297|gb|EFU48692.1| radical SAM domain protein [Escherichia coli MS 110-3]
 gi|315293738|gb|EFU53090.1| radical SAM domain protein [Escherichia coli MS 153-1]
 gi|315298732|gb|EFU57986.1| radical SAM domain protein [Escherichia coli MS 16-3]
 gi|320194912|gb|EFW69541.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli
           WV_060327]
 gi|323188807|gb|EFZ74092.1| hypothetical protein ECRN5871_3230 [Escherichia coli RN587/1]
 gi|323951009|gb|EGB46885.1| queuosine biosynthesis protein QueE [Escherichia coli H252]
 gi|323957215|gb|EGB52939.1| queuosine biosynthesis protein QueE [Escherichia coli H263]
 gi|324005736|gb|EGB74955.1| radical SAM domain protein [Escherichia coli MS 57-2]
 gi|324015485|gb|EGB84704.1| radical SAM domain protein [Escherichia coli MS 60-1]
 gi|330908805|gb|EGH37319.1| queuosine Biosynthesis QueE Radical SAM [Escherichia coli AA86]
 gi|331053468|gb|EGI25497.1| putative Organic radical activating enzyme [Escherichia coli TA206]
          Length = 223

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 93/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L K GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++              +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222


>gi|254246872|ref|ZP_04940193.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
 gi|124871648|gb|EAY63364.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
          Length = 207

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 88/150 (58%), Positives = 106/150 (70%), Gaps = 2/150 (1%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR  A CRFCDTDFVG  G  
Sbjct: 1   MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60

Query: 62  GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GG++ +   L   I   W  GE   R+ V TGGEP+LQ+D PL+ AL+  GFEIA+ETNG
Sbjct: 61  GGKFKDAAALVATIAGLWPEGEA-NRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
           ++   + IDWICVSPKA   L +  G ELK
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELK 149


>gi|293412124|ref|ZP_06654847.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291468895|gb|EFF11386.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 223

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L K GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYKVLSQALERANEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++              +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIDTCIAR-NWRLSMQTHKYLNI 222


>gi|193071786|ref|ZP_03052680.1| conserved hypothetical protein [Escherichia coli E110019]
 gi|300906700|ref|ZP_07124387.1| radical SAM domain protein [Escherichia coli MS 84-1]
 gi|300920372|ref|ZP_07136808.1| radical SAM domain protein [Escherichia coli MS 115-1]
 gi|301304544|ref|ZP_07210654.1| radical SAM domain protein [Escherichia coli MS 124-1]
 gi|192954902|gb|EDV85411.1| conserved hypothetical protein [Escherichia coli E110019]
 gi|300401505|gb|EFJ85043.1| radical SAM domain protein [Escherichia coli MS 84-1]
 gi|300412622|gb|EFJ95932.1| radical SAM domain protein [Escherichia coli MS 115-1]
 gi|300840148|gb|EFK67908.1| radical SAM domain protein [Escherichia coli MS 124-1]
 gi|315256635|gb|EFU36603.1| radical SAM domain protein [Escherichia coli MS 85-1]
 gi|323172921|gb|EFZ58552.1| hypothetical protein ECLT68_2322 [Escherichia coli LT-68]
          Length = 223

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLFSILAKTKESDKWGAASSEDLLAVISRQG----YTARHVVITGGEPCIHDLLPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L K GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++              +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|170018977|ref|YP_001723931.1| hypothetical protein EcolC_0935 [Escherichia coli ATCC 8739]
 gi|312973008|ref|ZP_07787181.1| uncharacterized protein ygcF [Escherichia coli 1827-70]
 gi|169753905|gb|ACA76604.1| conserved hypothetical protein [Escherichia coli ATCC 8739]
 gi|310332950|gb|EFQ00164.1| uncharacterized protein ygcF [Escherichia coli 1827-70]
 gi|323941542|gb|EGB37724.1| queuosine biosynthesis protein QueE [Escherichia coli E482]
          Length = 223

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLFSILAKTKESDKWGAASSEDLLAIIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L K GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++              +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|218555326|ref|YP_002388239.1| hypothetical protein ECIAI1_2883 [Escherichia coli IAI1]
 gi|300820561|ref|ZP_07100712.1| radical SAM domain protein [Escherichia coli MS 119-7]
 gi|309795241|ref|ZP_07689660.1| radical SAM domain protein [Escherichia coli MS 145-7]
 gi|331669510|ref|ZP_08370356.1| putative Organic radical activating enzyme [Escherichia coli TA271]
 gi|331678753|ref|ZP_08379427.1| putative Organic radical activating enzyme [Escherichia coli H591]
 gi|218362094|emb|CAQ99703.1| conserved hypothetical protein [Escherichia coli IAI1]
 gi|300526825|gb|EFK47894.1| radical SAM domain protein [Escherichia coli MS 119-7]
 gi|308121212|gb|EFO58474.1| radical SAM domain protein [Escherichia coli MS 145-7]
 gi|320202418|gb|EFW76988.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli EC4100B]
 gi|331063178|gb|EGI35091.1| putative Organic radical activating enzyme [Escherichia coli TA271]
 gi|331073583|gb|EGI44904.1| putative Organic radical activating enzyme [Escherichia coli H591]
          Length = 223

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLFSILAKTKESDKWGSASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L K GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++              +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|331664336|ref|ZP_08365242.1| putative Organic radical activating enzyme [Escherichia coli TA143]
 gi|284922713|emb|CBG35801.1| conserved hypothetical protein [Escherichia coli 042]
 gi|331058267|gb|EGI30248.1| putative Organic radical activating enzyme [Escherichia coli TA143]
          Length = 223

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L K GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++              +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIDTCIAR-NWRLSMQTHKYLNI 222


>gi|251788459|ref|YP_003003180.1| hypothetical protein Dd1591_0822 [Dickeya zeae Ech1591]
 gi|247537080|gb|ACT05701.1| conserved hypothetical protein [Dickeya zeae Ech1591]
          Length = 223

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 104/238 (43%), Gaps = 44/238 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56
           M+ Y I E+F TLQGEG   G  AVF R  GC +            C +CDT        
Sbjct: 1   MR-YPINEMFQTLQGEGFFTGVPAVFIRLQGCPV-----------GCSWCDTKHTWERLP 48

Query: 57  ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                     ++  +   ++     +L+++  + G    ++ V+TGGEP +    PL QA
Sbjct: 49  DRQIPLADILVKSGESDAWSHSSSEELLQQMRLQG-YSAKHIVITGGEPCIHDLTPLTQA 107

Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155
           L ++GF   +ET+GT E       W+ VSPK          D  ++   E+K    +   
Sbjct: 108 LEQQGFSTQIETSGTHEVRCSSACWVTVSPKVNMRGGLAVLDQALRRADEIKHPVARERD 167

Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +          D ++    +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDALLARLDDDKPRVVALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|110806555|ref|YP_690075.1| hypothetical protein SFV_2678 [Shigella flexneri 5 str. 8401]
 gi|110616103|gb|ABF04770.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 223

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHAWEKLEDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L K GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++              +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|300937751|ref|ZP_07152551.1| radical SAM domain protein [Escherichia coli MS 21-1]
 gi|300457230|gb|EFK20723.1| radical SAM domain protein [Escherichia coli MS 21-1]
          Length = 223

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 93/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I EIF TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEIFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L K GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++              +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|311278265|ref|YP_003940496.1| Radical SAM domain-containing protein [Enterobacter cloacae SCF1]
 gi|308747460|gb|ADO47212.1| Radical SAM domain protein [Enterobacter cloacae SCF1]
          Length = 223

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 91/238 (38%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDMLEDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G    + L   I  Q  T     R+ V+TGGEP +    PL   
Sbjct: 52  VSLFSILAKTKESDKWGAATAEDLLTAITRQGWTA----RHVVITGGEPCIHDLTPLTAL 107

Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL------V 152
           L + G+   +ET+GT E       W+ VSPK             +    E+K        
Sbjct: 108 LEQNGYSCQIETSGTHEVRCSHSTWVTVSPKVNMRGGFEVLSQALHRADEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++   E          +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLETLSDDKQRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|238786213|ref|ZP_04630161.1| hypothetical protein yberc0001_11680 [Yersinia bercovieri ATCC
           43970]
 gi|238712877|gb|EEQ04941.1| hypothetical protein yberc0001_11680 [Yersinia bercovieri ATCC
           43970]
          Length = 223

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 93/240 (38%), Gaps = 49/240 (20%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
            LY I E+F TLQGEG   G  A+F R  GC +            C +CDT         
Sbjct: 1   MLYPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKEAD 49

Query: 58  -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
                        +    G  +  QL  +  +Q        R+ V+TGGEP +   +PL 
Sbjct: 50  REVDMQRIMVKTAESDAWGSASEQQLLAIFSQQG----YTARHVVITGGEPAIYDLLPLT 105

Query: 105 QALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKL----- 151
             L + G+   +ET+GT E       W+ VSPK             ++   E+K      
Sbjct: 106 SVLEQAGYSCQIETSGTHEVQCSAATWVTVSPKVKMRGGLKILPQALQRADEIKHPVGRL 165

Query: 152 -VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                + V             +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 166 RDIEALEVLLATLHDDKKRIIALQPISQK--DDATKLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|82545074|ref|YP_409021.1| hypothetical protein SBO_2656 [Shigella boydii Sb227]
 gi|187733920|ref|YP_001881485.1| hypothetical protein SbBS512_E3099 [Shigella boydii CDC 3083-94]
 gi|193065022|ref|ZP_03046097.1| conserved hypothetical protein [Escherichia coli E22]
 gi|209920225|ref|YP_002294309.1| hypothetical protein ECSE_3034 [Escherichia coli SE11]
 gi|256019438|ref|ZP_05433303.1| hypothetical protein ShiD9_11027 [Shigella sp. D9]
 gi|260845423|ref|YP_003223201.1| hypothetical protein ECO103_3320 [Escherichia coli O103:H2 str.
           12009]
 gi|260856887|ref|YP_003230778.1| hypothetical protein ECO26_3847 [Escherichia coli O26:H11 str.
           11368]
 gi|260869456|ref|YP_003235858.1| hypothetical protein ECO111_3501 [Escherichia coli O111:H- str.
           11128]
 gi|300815807|ref|ZP_07096031.1| radical SAM domain protein [Escherichia coli MS 107-1]
 gi|300923910|ref|ZP_07139923.1| radical SAM domain protein [Escherichia coli MS 182-1]
 gi|301325508|ref|ZP_07218983.1| radical SAM domain protein [Escherichia coli MS 78-1]
 gi|81246485|gb|ABB67193.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|187430912|gb|ACD10186.1| conserved hypothetical protein [Shigella boydii CDC 3083-94]
 gi|192927319|gb|EDV81938.1| conserved hypothetical protein [Escherichia coli E22]
 gi|209913484|dbj|BAG78558.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|257755536|dbj|BAI27038.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368]
 gi|257760570|dbj|BAI32067.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009]
 gi|257765812|dbj|BAI37307.1| conserved predicted protein [Escherichia coli O111:H- str. 11128]
 gi|300419842|gb|EFK03153.1| radical SAM domain protein [Escherichia coli MS 182-1]
 gi|300531736|gb|EFK52798.1| radical SAM domain protein [Escherichia coli MS 107-1]
 gi|300847675|gb|EFK75435.1| radical SAM domain protein [Escherichia coli MS 78-1]
 gi|320183542|gb|EFW58388.1| Queuosine Biosynthesis QueE Radical SAM [Shigella flexneri CDC
           796-83]
 gi|323155006|gb|EFZ41198.1| radical SAM superfamily protein [Escherichia coli EPECa14]
 gi|323159909|gb|EFZ45879.1| radical SAM superfamily protein [Escherichia coli E128010]
 gi|323180206|gb|EFZ65758.1| radical SAM superfamily protein [Escherichia coli 1180]
 gi|324016296|gb|EGB85515.1| radical SAM domain protein [Escherichia coli MS 117-3]
 gi|332092167|gb|EGI97245.1| radical SAM superfamily protein [Shigella boydii 3594-74]
 gi|332102910|gb|EGJ06256.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 223

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L K GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++              +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|317492851|ref|ZP_07951275.1| radical SAM domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918973|gb|EFV40308.1| radical SAM domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 223

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 98/238 (41%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG + G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINELFQTLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEQLPERE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +    G    DQL  ++ E+        R+ V+TGGEP +    PL + 
Sbjct: 52  IGMNEILIKTAESDAWGSATPDQLLAILHERG----YTARHVVITGGEPCIHDLRPLTEL 107

Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVN 157
           LN+ GF   +ET+GT E       W+ VSPK      +K          E+K  V  + +
Sbjct: 108 LNQHGFSCQIETSGTHEIRCSDATWVTVSPKVNMKGGMKVLESALIRADEVKHPVARERD 167

Query: 158 VSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +   + +            +LQP+     E  T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEDLDTLLAVLHDDKQRIIALQPISQK--ESATKLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|157148316|ref|YP_001455635.1| hypothetical protein CKO_04133 [Citrobacter koseri ATCC BAA-895]
 gi|157085521|gb|ABV15199.1| hypothetical protein CKO_04133 [Citrobacter koseri ATCC BAA-895]
          Length = 223

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 96/238 (40%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLEDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLYSILAKTKESDKWGAASSEDLLAVISRQG----YTARHVVITGGEPCIHDLMPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155
           L K GF   +ET+GT E       W+ VSPK             ++   E+K    +   
Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRD 167

Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    E       ++    +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLSDDKPRIIALQPISQK--EDATRLCIETCIVR-NWRLSMQTHKYLNI 222


>gi|319642227|ref|ZP_07996886.1| hypothetical protein HMPREF9011_02486 [Bacteroides sp. 3_1_40A]
 gi|317386083|gb|EFV67003.1| hypothetical protein HMPREF9011_02486 [Bacteroides sp. 3_1_40A]
          Length = 181

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 70/209 (33%), Positives = 104/209 (49%), Gaps = 28/209 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + EIF ++QGEG H G  AVF RFSGCNL           +C FCDT         G
Sbjct: 1   MKKVNEIFYSIQGEGYHTGTPAVFVRFSGCNL-----------KCPFCDTQH-----EDG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + +++   +      G+      +LTGGEP L +D   +  L++ G  + +ETNGT 
Sbjct: 45  ILMSDEEILSEV------GKYPAVMVILTGGEPSLWIDREFVDRLHRIGKYVCIETNGTR 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P  IDW+  SPK G +  +    E+K+V+   ++S   Y       + LQP       
Sbjct: 99  SLPNNIDWVTCSPKEGSNAIVVNPHEIKVVYTGQDLS--TYEEMTAAVYYLQPCSC---- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +NT   I Y  ++PKW+LS+QT K + +R
Sbjct: 153 QNTEEVIGYIKKHPKWKLSLQTQKILNVR 181


>gi|218259962|ref|ZP_03475458.1| hypothetical protein PRABACTJOHN_01119 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224823|gb|EEC97473.1| hypothetical protein PRABACTJOHN_01119 [Parabacteroides johnsonii
           DSM 18315]
          Length = 180

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 77/208 (37%), Positives = 103/208 (49%), Gaps = 29/208 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        +G
Sbjct: 1   MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------KCSFCDTRH-----EEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + + +   I              +LTGGEP L +D   I  L+  G  I +ETNGT 
Sbjct: 45  ILMSDEDILQAISA------FPSNVVILTGGEPSLWIDQTFIDLLHMAGKYICIETNGTN 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+GIDW+  SPK G  L++    E+K+V+   +++   Y G +     LQP       
Sbjct: 99  PLPEGIDWVTCSPK-GFPLRLAHIDEVKVVYTGQDLT--EYAGLEATWHFLQPCSCL--- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT   + Y   +P+WRLS+QTHK I I
Sbjct: 153 -NTKEVVEYILHHPQWRLSLQTHKLIDI 179


>gi|15832887|ref|NP_311660.1| hypothetical protein ECs3633 [Escherichia coli O157:H7 str. Sakai]
 gi|16130684|ref|NP_417257.1| conserved protein [Escherichia coli str. K-12 substr. MG1655]
 gi|24114061|ref|NP_708571.1| hypothetical protein SF2790 [Shigella flexneri 2a str. 301]
 gi|30064123|ref|NP_838294.1| hypothetical protein S2984 [Shigella flexneri 2a str. 2457T]
 gi|82778146|ref|YP_404495.1| hypothetical protein SDY_2981 [Shigella dysenteriae Sd197]
 gi|89109563|ref|AP_003343.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110]
 gi|157155007|ref|YP_001464098.1| hypothetical protein EcE24377A_3080 [Escherichia coli E24377A]
 gi|157162228|ref|YP_001459546.1| hypothetical protein EcHS_A2918 [Escherichia coli HS]
 gi|168749899|ref|ZP_02774921.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758464|ref|ZP_02783471.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762823|ref|ZP_02787830.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768869|ref|ZP_02793876.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|168778760|ref|ZP_02803767.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|168788031|ref|ZP_02813038.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC869]
 gi|168802847|ref|ZP_02827854.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC508]
 gi|170082350|ref|YP_001731670.1| hypothetical protein ECDH10B_2944 [Escherichia coli str. K-12
           substr. DH10B]
 gi|170682101|ref|YP_001744934.1| hypothetical protein EcSMS35_2910 [Escherichia coli SMS-3-5]
 gi|170766131|ref|ZP_02900942.1| conserved hypothetical protein [Escherichia albertii TW07627]
 gi|188495163|ref|ZP_03002433.1| conserved hypothetical protein [Escherichia coli 53638]
 gi|194434862|ref|ZP_03067109.1| conserved hypothetical protein [Shigella dysenteriae 1012]
 gi|194438962|ref|ZP_03071046.1| conserved hypothetical protein [Escherichia coli 101-1]
 gi|195939488|ref|ZP_03084870.1| hypothetical protein EscherichcoliO157_24278 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208805739|ref|ZP_03248076.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813020|ref|ZP_03254349.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819186|ref|ZP_03259506.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398503|ref|YP_002272239.1| hypothetical protein ECH74115_4033 [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327761|ref|ZP_03443844.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218547712|ref|YP_002381503.1| hypothetical protein EFER_0293 [Escherichia fergusonii ATCC 35469]
 gi|218696375|ref|YP_002404042.1| hypothetical protein EC55989_3051 [Escherichia coli 55989]
 gi|218706272|ref|YP_002413791.1| hypothetical protein ECUMN_3104 [Escherichia coli UMN026]
 gi|238901913|ref|YP_002927709.1| hypothetical protein BWG_2512 [Escherichia coli BW2952]
 gi|253772373|ref|YP_003035204.1| hypothetical protein ECBD_0953 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037826|ref|ZP_04871884.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|254162703|ref|YP_003045811.1| hypothetical protein ECB_02622 [Escherichia coli B str. REL606]
 gi|254794716|ref|YP_003079553.1| hypothetical protein ECSP_3726 [Escherichia coli O157:H7 str.
           TW14359]
 gi|256024721|ref|ZP_05438586.1| hypothetical protein E4_15200 [Escherichia sp. 4_1_40B]
 gi|261226072|ref|ZP_05940353.1| hypothetical protein EscherichiacoliO157_15958 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261256672|ref|ZP_05949205.1| hypothetical protein EscherichiacoliO157EcO_12655 [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291284103|ref|YP_003500921.1| hypothetical protein G2583_3426 [Escherichia coli O55:H7 str.
           CB9615]
 gi|293406268|ref|ZP_06650194.1| aconitate hydratase [Escherichia coli FVEC1412]
 gi|293416022|ref|ZP_06658662.1| ygcF protein [Escherichia coli B185]
 gi|293449103|ref|ZP_06663524.1| ygcF protein [Escherichia coli B088]
 gi|298382006|ref|ZP_06991603.1| ygcF protein [Escherichia coli FVEC1302]
 gi|300899636|ref|ZP_07117868.1| radical SAM domain protein [Escherichia coli MS 198-1]
 gi|300931233|ref|ZP_07146574.1| radical SAM domain protein [Escherichia coli MS 187-1]
 gi|300950504|ref|ZP_07164414.1| radical SAM domain protein [Escherichia coli MS 116-1]
 gi|300958089|ref|ZP_07170250.1| radical SAM domain protein [Escherichia coli MS 175-1]
 gi|301020692|ref|ZP_07184762.1| radical SAM domain protein [Escherichia coli MS 196-1]
 gi|301645261|ref|ZP_07245212.1| radical SAM domain protein [Escherichia coli MS 146-1]
 gi|307139461|ref|ZP_07498817.1| hypothetical protein EcolH7_15212 [Escherichia coli H736]
 gi|307312795|ref|ZP_07592425.1| Radical SAM domain protein [Escherichia coli W]
 gi|309786123|ref|ZP_07680751.1| uncharacterized protein ygcF [Shigella dysenteriae 1617]
 gi|331643461|ref|ZP_08344592.1| putative Organic radical activating enzyme [Escherichia coli H736]
 gi|331654257|ref|ZP_08355257.1| putative Organic radical activating enzyme [Escherichia coli M718]
 gi|331684398|ref|ZP_08384990.1| putative Organic radical activating enzyme [Escherichia coli H299]
 gi|54040228|sp|P64555|YGCF_ECO57 RecName: Full=7-carboxy-7-deazaguanine synthase homolog
 gi|54040229|sp|P64556|YGCF_SHIFL RecName: Full=7-carboxy-7-deazaguanine synthase homolog
 gi|54042396|sp|P64554|YGCF_ECOLI RecName: Full=7-carboxy-7-deazaguanine synthase homolog
 gi|882671|gb|AAA69287.1| ORF_f223 [Escherichia coli str. K-12 substr. MG1655]
 gi|1789139|gb|AAC75819.1| conserved protein [Escherichia coli str. K-12 substr. MG1655]
 gi|13363104|dbj|BAB37056.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|24053188|gb|AAN44278.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30042379|gb|AAP18104.1| hypothetical protein S2984 [Shigella flexneri 2a str. 2457T]
 gi|81242294|gb|ABB63004.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|85675596|dbj|BAE76851.1| conserved hypothetical protein [Escherichia coli str. K12 substr.
           W3110]
 gi|157067908|gb|ABV07163.1| conserved hypothetical protein [Escherichia coli HS]
 gi|157077037|gb|ABV16745.1| conserved hypothetical protein [Escherichia coli E24377A]
 gi|169890185|gb|ACB03892.1| conserved protein [Escherichia coli str. K-12 substr. DH10B]
 gi|170125277|gb|EDS94208.1| conserved hypothetical protein [Escherichia albertii TW07627]
 gi|170519819|gb|ACB17997.1| conserved hypothetical protein [Escherichia coli SMS-3-5]
 gi|188015830|gb|EDU53952.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|188490362|gb|EDU65465.1| conserved hypothetical protein [Escherichia coli 53638]
 gi|189003552|gb|EDU72538.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354704|gb|EDU73123.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362097|gb|EDU80516.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366881|gb|EDU85297.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372100|gb|EDU90516.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC869]
 gi|189375278|gb|EDU93694.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC508]
 gi|194416881|gb|EDX33003.1| conserved hypothetical protein [Shigella dysenteriae 1012]
 gi|194422083|gb|EDX38086.1| conserved hypothetical protein [Escherichia coli 101-1]
 gi|208725540|gb|EDZ75141.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734297|gb|EDZ82984.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739309|gb|EDZ86991.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159903|gb|ACI37336.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209761508|gb|ACI79066.1| hypothetical protein ECs3633 [Escherichia coli]
 gi|209761510|gb|ACI79067.1| hypothetical protein ECs3633 [Escherichia coli]
 gi|209761512|gb|ACI79068.1| hypothetical protein ECs3633 [Escherichia coli]
 gi|209761514|gb|ACI79069.1| hypothetical protein ECs3633 [Escherichia coli]
 gi|209761516|gb|ACI79070.1| hypothetical protein ECs3633 [Escherichia coli]
 gi|217320128|gb|EEC28553.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218353107|emb|CAU98932.1| conserved hypothetical protein [Escherichia coli 55989]
 gi|218355253|emb|CAQ87860.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469]
 gi|218433369|emb|CAR14271.1| conserved hypothetical protein [Escherichia coli UMN026]
 gi|226839450|gb|EEH71471.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|238860367|gb|ACR62365.1| conserved protein [Escherichia coli BW2952]
 gi|242378324|emb|CAQ33101.1| conserved protein [Escherichia coli BL21(DE3)]
 gi|253323417|gb|ACT28019.1| conserved hypothetical protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974604|gb|ACT40275.1| hypothetical protein ECB_02622 [Escherichia coli B str. REL606]
 gi|253978769|gb|ACT44439.1| hypothetical protein ECD_02622 [Escherichia coli BL21(DE3)]
 gi|254594116|gb|ACT73477.1| conserved protein [Escherichia coli O157:H7 str. TW14359]
 gi|260448173|gb|ACX38595.1| conserved hypothetical protein [Escherichia coli DH1]
 gi|281602138|gb|ADA75122.1| hypothetical protein SFxv_3060 [Shigella flexneri 2002017]
 gi|290763976|gb|ADD57937.1| hypothetical protein G2583_3426 [Escherichia coli O55:H7 str.
           CB9615]
 gi|291322193|gb|EFE61622.1| ygcF protein [Escherichia coli B088]
 gi|291426274|gb|EFE99306.1| aconitate hydratase [Escherichia coli FVEC1412]
 gi|291432211|gb|EFF05193.1| ygcF protein [Escherichia coli B185]
 gi|298277146|gb|EFI18662.1| ygcF protein [Escherichia coli FVEC1302]
 gi|299881782|gb|EFI89993.1| radical SAM domain protein [Escherichia coli MS 196-1]
 gi|300315222|gb|EFJ65006.1| radical SAM domain protein [Escherichia coli MS 175-1]
 gi|300356797|gb|EFJ72667.1| radical SAM domain protein [Escherichia coli MS 198-1]
 gi|300450164|gb|EFK13784.1| radical SAM domain protein [Escherichia coli MS 116-1]
 gi|300460946|gb|EFK24439.1| radical SAM domain protein [Escherichia coli MS 187-1]
 gi|301076426|gb|EFK91232.1| radical SAM domain protein [Escherichia coli MS 146-1]
 gi|306907230|gb|EFN37736.1| Radical SAM domain protein [Escherichia coli W]
 gi|308925868|gb|EFP71347.1| uncharacterized protein ygcF [Shigella dysenteriae 1617]
 gi|309703136|emb|CBJ02470.1| conserved hypothetical protein [Escherichia coli ETEC H10407]
 gi|313647836|gb|EFS12282.1| uncharacterized protein ygcF [Shigella flexneri 2a str. 2457T]
 gi|315062058|gb|ADT76385.1| conserved protein [Escherichia coli W]
 gi|315137383|dbj|BAJ44542.1| hypothetical protein ECDH1ME8569_2686 [Escherichia coli DH1]
 gi|315615162|gb|EFU95799.1| uncharacterized protein ygcF [Escherichia coli 3431]
 gi|320182388|gb|EFW57285.1| Queuosine Biosynthesis QueE Radical SAM [Shigella boydii ATCC 9905]
 gi|320189106|gb|EFW63765.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli O157:H7
           str. EC1212]
 gi|320640422|gb|EFX09961.1| hypothetical protein ECO5101_03379 [Escherichia coli O157:H7 str.
           G5101]
 gi|320645668|gb|EFX14653.1| hypothetical protein ECO9389_22861 [Escherichia coli O157:H- str.
           493-89]
 gi|320650968|gb|EFX19408.1| hypothetical protein ECO2687_10848 [Escherichia coli O157:H- str. H
           2687]
 gi|320656464|gb|EFX24360.1| hypothetical protein ECO7815_01005 [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662360|gb|EFX29757.1| hypothetical protein ECO5905_04892 [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320667058|gb|EFX34021.1| hypothetical protein ECOSU61_08009 [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323183315|gb|EFZ68712.1| hypothetical protein ECOK1357_3090 [Escherichia coli 1357]
 gi|323377359|gb|ADX49627.1| Radical SAM domain protein [Escherichia coli KO11]
 gi|323933926|gb|EGB30415.1| queuosine biosynthesis protein QueE [Escherichia coli E1520]
 gi|323946500|gb|EGB42526.1| queuosine biosynthesis protein QueE [Escherichia coli H120]
 gi|323960705|gb|EGB56329.1| queuosine biosynthesis protein QueE [Escherichia coli H489]
 gi|323966752|gb|EGB62183.1| queuosine biosynthesis protein QueE [Escherichia coli M863]
 gi|323971622|gb|EGB66853.1| queuosine biosynthesis protein QueE [Escherichia coli TA007]
 gi|323978613|gb|EGB73695.1| queuosine biosynthesis protein QueE [Escherichia coli TW10509]
 gi|324111402|gb|EGC05384.1| hypothetical protein ERIG_04120 [Escherichia fergusonii B253]
 gi|324119819|gb|EGC13698.1| queuosine biosynthesis protein QueE [Escherichia coli E1167]
 gi|325496184|gb|EGC94043.1| hypothetical protein ECD227_0281 [Escherichia fergusonii ECD227]
 gi|326339155|gb|EGD62970.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli O157:H7
           str. 1044]
 gi|326342962|gb|EGD66730.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli O157:H7
           str. 1125]
 gi|327251511|gb|EGE63197.1| hypothetical protein ECSTEC7V_3359 [Escherichia coli STEC_7v]
 gi|331036932|gb|EGI09156.1| putative Organic radical activating enzyme [Escherichia coli H736]
 gi|331047639|gb|EGI19716.1| putative Organic radical activating enzyme [Escherichia coli M718]
 gi|331078013|gb|EGI49219.1| putative Organic radical activating enzyme [Escherichia coli H299]
 gi|332087574|gb|EGI92702.1| hypothetical protein SB521682_3318 [Shigella boydii 5216-82]
 gi|332087749|gb|EGI92876.1| hypothetical protein SD15574_3520 [Shigella dysenteriae 155-74]
          Length = 223

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L K GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++              +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|327395003|dbj|BAK12425.1| organic radical Activating YgcF [Pantoea ananatis AJ13355]
          Length = 223

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 97/238 (40%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y I E+F TLQGEG + G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKQADRE 51

Query: 57  ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                     ++    G  +   L   I +Q  T     R+ V+TGGEP +    PL  +
Sbjct: 52  TSLGDILVKTVESDAWGNADTATLLSSIAQQGWTA----RHVVITGGEPAIYDLRPLTAS 107

Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQVN 157
           L   GF+  +ET+GT E       W+ VSPK             +    E+K  V  Q +
Sbjct: 108 LEAAGFQCQIETSGTHEIHCSEQTWVTVSPKVNMRGGYDVLAQALSRADEIKHPVARQRD 167

Query: 158 VSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           V   + +            +LQP+     +E T L I  C     WRLS+QTHK++ I
Sbjct: 168 VEALDDLLAGIQDSKARIIALQPISRK--DEATKLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|331674271|ref|ZP_08375031.1| putative Organic radical activating enzyme [Escherichia coli TA280]
 gi|331068365|gb|EGI39760.1| putative Organic radical activating enzyme [Escherichia coli TA280]
          Length = 223

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLMPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L K GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++              +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|239996401|ref|ZP_04716925.1| radical activating enzyme [Alteromonas macleodii ATCC 27126]
          Length = 224

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 100/239 (41%), Gaps = 43/239 (17%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56
           M   +I E+F T+QGEG H G  ++F R  GC +            C +CDT        
Sbjct: 1   MSTLNINEMFETIQGEGAHTGIPSIFVRLQGCPV-----------GCPWCDTKHTWEIKP 49

Query: 57  ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +G +   Y +     L+ E    G    ++ V+TGGEP +    PL   
Sbjct: 50  DLSVSPQAVITKGEESETYFISSEEALLAEFGKQG-YVAKHVVITGGEPCMYDLRPLTSL 108

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDL-------KIKGGQELKL------V 152
           L+  G+   +ET+GT E       ++ VSPK             ++   E+K        
Sbjct: 109 LHDNGYTTQIETSGTFEVLCDTRTYVTVSPKINMKGGYDVLVSALERANEIKHPIAMQKH 168

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             +++    N    D ++  LQP+     +  T LA+  C +   WRLS+QTHK+IGI 
Sbjct: 169 IDELDALLANVSSLDGKQVCLQPISQ--QKRATELAVRTCIER-NWRLSLQTHKYIGIE 224


>gi|146312870|ref|YP_001177944.1| radical SAM domain-containing protein [Enterobacter sp. 638]
 gi|145319746|gb|ABP61893.1| Radical SAM domain protein [Enterobacter sp. 638]
          Length = 223

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 96/238 (40%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLADRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q  T     R+ V+TGGEP +   + L   
Sbjct: 52  VSLFSILAKTKESDKWGAGSAEDLLAIIGRQGWTA----RHVVITGGEPCIHDLMSLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGID-WICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155
           L K G+   +ET+GT E       W+ VSPK             ++   E+K    +   
Sbjct: 108 LEKNGYSCQIETSGTHEVRCSHTAWVTVSPKVNMRGGYDVLSQALERADEIKHPVGRMRD 167

Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    E       E+    +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLTDEKQRIIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|310766631|gb|ADP11581.1| Uncharacterized protein ygcF [Erwinia sp. Ejp617]
          Length = 223

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 95/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y I E+F TLQGEG + G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLANRE 51

Query: 57  ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                     ++    G  +   L + I     T     ++ V+TGGEP +    PL  A
Sbjct: 52  TSLGDILLKTVETDAWGAADAPALLETIRRHGWTA----KHIVITGGEPCIYDLTPLTAA 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL-VFPQVN 157
           L   GF   +ET+GT +       W+ VSPK          +  +    E+K  V  Q +
Sbjct: 108 LQDSGFSCQIETSGTHQVRCTAQTWVTVSPKVNMRGGYDVLNQALARADEVKHPVARQRD 167

Query: 158 VSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           V   + +            +LQP+      + T L I  C     WRLS+QTHK++ I
Sbjct: 168 VDALDELLATLNDNKARIIALQPISQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222


>gi|22124729|ref|NP_668152.1| hypothetical protein y0816 [Yersinia pestis KIM 10]
 gi|45440171|ref|NP_991710.1| hypothetical protein YP_0312 [Yersinia pestis biovar Microtus str.
           91001]
 gi|51595107|ref|YP_069298.1| coenzyme PQQ synthesis protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108808863|ref|YP_652779.1| hypothetical protein YPA_2872 [Yersinia pestis Antiqua]
 gi|108810883|ref|YP_646650.1| hypothetical protein YPN_0718 [Yersinia pestis Nepal516]
 gi|145600242|ref|YP_001164318.1| hypothetical protein YPDSF_2985 [Yersinia pestis Pestoides F]
 gi|153949574|ref|YP_001402270.1| radical SAM domain-containing protein [Yersinia pseudotuberculosis
           IP 31758]
 gi|153997583|ref|ZP_02022683.1| hypothetical protein YPE_4042 [Yersinia pestis CA88-4125]
 gi|162421287|ref|YP_001605539.1| radical SAM domain-containing protein [Yersinia pestis Angola]
 gi|165925701|ref|ZP_02221533.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936653|ref|ZP_02225220.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166009994|ref|ZP_02230892.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166214107|ref|ZP_02240142.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398407|ref|ZP_02303931.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420659|ref|ZP_02312412.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423406|ref|ZP_02315159.1| radical SAM domain protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167470705|ref|ZP_02335409.1| radical SAM domain protein [Yersinia pestis FV-1]
 gi|170025659|ref|YP_001722164.1| radical SAM domain-containing protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186894119|ref|YP_001871231.1| radical SAM domain-containing protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|218930391|ref|YP_002348266.1| hypothetical protein YPO3374 [Yersinia pestis CO92]
 gi|229839004|ref|ZP_04459163.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229896484|ref|ZP_04511652.1| conserved protein [Yersinia pestis Pestoides A]
 gi|229899572|ref|ZP_04514713.1| conserved protein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229901094|ref|ZP_04516217.1| conserved protein [Yersinia pestis Nepal516]
 gi|270489273|ref|ZP_06206347.1| radical SAM domain protein [Yersinia pestis KIM D27]
 gi|294505081|ref|YP_003569143.1| hypothetical protein YPZ3_2972 [Yersinia pestis Z176003]
 gi|21957546|gb|AAM84403.1|AE013684_5 hypothetical protein y0816 [Yersinia pestis KIM 10]
 gi|45435027|gb|AAS60587.1| Organic radical activating enzymes [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51588389|emb|CAH19997.1| putative coenzyme PQQ synthesis protein, nitrogenase
           iron-molybdenum domain [Yersinia pseudotuberculosis IP
           32953]
 gi|108774531|gb|ABG17050.1| hypothetical protein YPN_0718 [Yersinia pestis Nepal516]
 gi|108780776|gb|ABG14834.1| hypothetical protein YPA_2872 [Yersinia pestis Antiqua]
 gi|115349002|emb|CAL21963.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145211938|gb|ABP41345.1| hypothetical protein YPDSF_2985 [Yersinia pestis Pestoides F]
 gi|149289220|gb|EDM39300.1| hypothetical protein YPE_4042 [Yersinia pestis CA88-4125]
 gi|152961069|gb|ABS48530.1| radical SAM domain protein [Yersinia pseudotuberculosis IP 31758]
 gi|162354102|gb|ABX88050.1| radical SAM domain protein [Yersinia pestis Angola]
 gi|165915302|gb|EDR33912.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165922313|gb|EDR39490.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990901|gb|EDR43202.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166204738|gb|EDR49218.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166961465|gb|EDR57486.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050911|gb|EDR62319.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167057576|gb|EDR67322.1| radical SAM domain protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169752193|gb|ACA69711.1| Radical SAM domain protein [Yersinia pseudotuberculosis YPIII]
 gi|186697145|gb|ACC87774.1| Radical SAM domain protein [Yersinia pseudotuberculosis PB1/+]
 gi|229681819|gb|EEO77912.1| conserved protein [Yersinia pestis Nepal516]
 gi|229687064|gb|EEO79139.1| conserved protein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229695370|gb|EEO85417.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700558|gb|EEO88589.1| conserved protein [Yersinia pestis Pestoides A]
 gi|262363141|gb|ACY59862.1| hypothetical protein YPD4_2958 [Yersinia pestis D106004]
 gi|262367071|gb|ACY63628.1| hypothetical protein YPD8_2956 [Yersinia pestis D182038]
 gi|270337777|gb|EFA48554.1| radical SAM domain protein [Yersinia pestis KIM D27]
 gi|294355540|gb|ADE65881.1| hypothetical protein YPZ3_2972 [Yersinia pestis Z176003]
 gi|320016570|gb|ADW00142.1| conserved protein [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 223

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 96/240 (40%), Gaps = 49/240 (20%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
            LY I E+F TLQGEG   G  A+F R  GC +            C +CDT         
Sbjct: 1   MLYPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKEAD 49

Query: 58  -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
                        +    G  +  QL DL  +Q        R+ V+TGGEP +    PL 
Sbjct: 50  REVDMQRIMVKTAESDAWGSASEQQLLDLFAQQG----YTARHVVITGGEPSIYDLQPLT 105

Query: 105 QALNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ- 155
             L + GF   +ET+GT E       W+ VSPK             ++   E+K    + 
Sbjct: 106 SLLEQAGFSCQIETSGTHEVRCSAQTWVTVSPKVNMRGGLKILSQALQRADEIKHPVGRL 165

Query: 156 --VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             +          D ++    +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 166 RDIEALEALLATLDDDKKRIIALQPISQK--EDATKLCIETCIAK-NWRLSMQTHKYLNI 222


>gi|15803295|ref|NP_289328.1| hypothetical protein Z4089 [Escherichia coli O157:H7 EDL933]
 gi|25497213|pir||C85928 hypothetical protein ygcF [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12517243|gb|AAG57887.1|AE005505_5 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 223

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLFSILAKTKESDKWGAASSEBLLAVIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L K GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++              +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|253988156|ref|YP_003039512.1| hypothetical protein PAU_00675 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779606|emb|CAQ82767.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 223

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 96/238 (40%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I EIF TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEIFQTLQGEGFFTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKKAEKQ 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  + G  +  Q+A L  +Q        R+ V+TGGEP +   +PL + 
Sbjct: 52  QMLETILLKTNESDEWGEASPKQIATLFVQQG----YTARHVVITGGEPCIYDLIPLTEE 107

Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155
           L   G++  +ET+GT         W+ VSPK             ++   E+K    +   
Sbjct: 108 LENLGYQCQIETSGTYHVECSAATWVTVSPKVKMRGGYQVLQQALQRANEIKHPVARERD 167

Query: 156 VNVSPENYIGFD---FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    E     D       +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLDNNSSRIIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|300727783|ref|ZP_07061165.1| organic radical activating enzyme [Prevotella bryantii B14]
 gi|299774936|gb|EFI71546.1| organic radical activating enzyme [Prevotella bryantii B14]
          Length = 196

 Score =  233 bits (596), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 81/216 (37%), Positives = 114/216 (52%), Gaps = 27/216 (12%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H GR A+F RFSGCNL           +C FCDTDF   Q    
Sbjct: 1   MKKINEIFYSLQGEGRHTGRAAIFIRFSGCNL-----------KCSFCDTDFKDYQ---- 45

Query: 63  GRYNVDQLADLIEEQ----WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
              + + +   +EE          +     +LTGGEP +QVD   I   +  G+ +A+E+
Sbjct: 46  -EMSDEDILYKVEELRKDKIKDAGQPKPMIILTGGEPTMQVDGAFIDMFHAAGYFVAMES 104

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
           NGT EPP+ +DW+ VSPK    +K+    ELK +F   +    +  G     + LQP D 
Sbjct: 105 NGTKEPPKQLDWLTVSPKEH--VKVAQCDELKCIFDGEHQV--DTFGIKAYYYYLQPCDT 160

Query: 179 PFLEENTNL---AISYCFQNPKWRLSVQTHKFIGIR 211
              ++N  +    ++Y  Q+PKWRLS+QTHK IG +
Sbjct: 161 GDAQKNQEILSACVAYIEQHPKWRLSLQTHKLIGFK 196


>gi|271501834|ref|YP_003334860.1| Radical SAM domain-containing protein [Dickeya dadantii Ech586]
 gi|270345389|gb|ACZ78154.1| Radical SAM domain protein [Dickeya dadantii Ech586]
          Length = 223

 Score =  233 bits (596), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 100/241 (41%), Gaps = 50/241 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI--- 57
           M+ Y I E+F TLQGEG   G  AVF R  GC +            C +CDT        
Sbjct: 1   MR-YPINEMFQTLQGEGFFTGVPAVFIRLQGCPV-----------GCSWCDTKHTWDTLP 48

Query: 58  --------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
                         +       +V+ L   I +Q        R+ V+TGGEP +    PL
Sbjct: 49  ERQISLAEVLVKRGESDAWSSSSVEALLQQITQQG----YSARHVVITGGEPCIHDLTPL 104

Query: 104 IQALNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ 155
            QAL ++GF   +ET+GT E       W+ VSPK          D  ++   E+K    +
Sbjct: 105 TQALEQQGFSTQIETSGTHEVRCSSGCWVTVSPKVNMRGGLAVLDQALQRADEIKHPVAR 164

Query: 156 ---VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
              +          D ++    +LQP+     E+ T L I  C     WRLS+QTHK++ 
Sbjct: 165 ERDIEALEGLLARLDDDKVRVVALQPVSQK--EDATRLCIETCIAR-NWRLSMQTHKYLN 221

Query: 210 I 210
           I
Sbjct: 222 I 222


>gi|27366011|ref|NP_761539.1| Queuosine Biosynthesis QueE Radical SAM [Vibrio vulnificus CMCP6]
 gi|37679724|ref|NP_934333.1| organic radical activating enzyme [Vibrio vulnificus YJ016]
 gi|320156525|ref|YP_004188904.1| queuosine Biosynthesis QueE Radical SAM [Vibrio vulnificus
           MO6-24/O]
 gi|27362211|gb|AAO11066.1| Queuosine Biosynthesis QueE Radical SAM [Vibrio vulnificus CMCP6]
 gi|37198469|dbj|BAC94304.1| organic radical activating enzyme [Vibrio vulnificus YJ016]
 gi|319931837|gb|ADV86701.1| queuosine Biosynthesis QueE Radical SAM [Vibrio vulnificus
           MO6-24/O]
          Length = 224

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 97/237 (40%), Gaps = 41/237 (17%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M LY + E+F T+QGEG   G  AVF R   C +            C +CDT        
Sbjct: 1   MTLYKVNEMFETIQGEGVFTGVPAVFVRLQICPV-----------GCSWCDTKQTWEAAE 49

Query: 61  KGGRYNVDQL-------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
           +  +   + +             A  I EQ+       ++ V+TGGEP L     L QA 
Sbjct: 50  QDEQSFAEIIVKTGDSPTWCQADAAAIVEQYQRQGYSAKHIVITGGEPCLYDLTELTQAF 109

Query: 108 NKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNV 158
              G +  +ET+GT E       W+ VSPK     K+           E+K  V  Q ++
Sbjct: 110 EAIGCQCQIETSGTYEVKASENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVGTQKDI 169

Query: 159 SPENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              + +    +       +LQP+     E  T L I  C +   WRLS+QTHK++ I
Sbjct: 170 DQLDALLLRAQVPATTVIALQPISQK--ERATQLCIDTCIKR-NWRLSIQTHKYLSI 223


>gi|259909462|ref|YP_002649818.1| hypothetical protein EpC_28370 [Erwinia pyrifoliae Ep1/96]
 gi|224965084|emb|CAX56616.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96]
          Length = 223

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 95/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y I E+F TLQGEG + G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLADRE 51

Query: 57  ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                     ++    G  +   L + I     T     ++ V+TGGEP +    PL  A
Sbjct: 52  TSLGDILLKTVETDAWGAADAPALLETIRRHGWTA----KHIVITGGEPCIYDLTPLTAA 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL-VFPQVN 157
           L   GF   +ET+GT +       W+ VSPK          +  +    E+K  V  Q +
Sbjct: 108 LQDSGFSCQIETSGTHQVRCTAQTWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQRD 167

Query: 158 VSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           V   + +            +LQP+      + T L I  C     WRLS+QTHK++ I
Sbjct: 168 VDALDELLATLNDNKARIIALQPISQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222


>gi|282879508|ref|ZP_06288242.1| radical SAM domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281306655|gb|EFA98681.1| radical SAM domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 199

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 77/217 (35%), Positives = 116/217 (53%), Gaps = 30/217 (13%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           + Y + EIF +LQGEG HAG+ AVF RF+ CNL            C FCDT+F      +
Sbjct: 6   RTYKVNEIFYSLQGEGHHAGKAAVFVRFAKCNL-----------HCSFCDTNF-----DE 49

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
               +  Q+ + +++          + V+TGGEP LQV   L+Q  +  G+ +++ETNGT
Sbjct: 50  YTEMSAQQIIENVQQYA-----PCNFVVITGGEPTLQVTATLLQLFHVHGYYVSMETNGT 104

Query: 122 IEPPQGIDWICVSPKAGC----DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177
              P+G+DWI  SPK       D++IK   E+K+V+    + P +  G + E   +QP D
Sbjct: 105 HPIPKGVDWITCSPKKAFIEAGDVQIKQANEIKVVYD--GIHPISTFGIEAEERYVQPCD 162

Query: 178 GPFLEENTNL---AISYCFQNPKWRLSVQTHKFIGIR 211
                 N  +   AI +   +P+W+LS+Q HK IGI+
Sbjct: 163 VGDESRNKEILQKAIQFVKTHPQWKLSLQLHKLIGIQ 199


>gi|292900399|ref|YP_003539768.1| hypothetical protein EAM_2701 [Erwinia amylovora ATCC 49946]
 gi|291200247|emb|CBJ47375.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
          Length = 223

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 95/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y I E+F TLQGEG + G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGVYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLANRE 51

Query: 57  ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                     ++    G  +   L + I     T     ++ V+TGGEP +    PL  A
Sbjct: 52  TSLGDILLKTVESDAWGAADAPALLETIRRHGWTA----KHIVITGGEPCIHDLTPLTAA 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL-VFPQVN 157
           L   GF   +ET+GT E       W+ VSPK          +  +    E+K  V  Q +
Sbjct: 108 LQGSGFSCQIETSGTHEVHCTAETWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQRD 167

Query: 158 VSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           V   + +            +LQP+      + T L I  C     WRLS+QTHK++ I
Sbjct: 168 VDALDDLLATLSDNKARIIALQPVSQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222


>gi|37524702|ref|NP_928046.1| hypothetical protein plu0701 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784127|emb|CAE12996.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 223

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 97/235 (41%), Gaps = 43/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF TLQGEG   G  A+F R  GC +            C +CDT     +  +  
Sbjct: 3   YPINEIFQTLQGEGFFTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKEVEKQ 51

Query: 64  RYNVDQLA--------------DLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
           R  ++ +                 I   ++  +   R+ V+TGGEP L   +PL + L  
Sbjct: 52  R-TLETILLKTSESNEWSKASPKQITALFVQQKYTARHVVITGGEPCLYDLIPLTEELES 110

Query: 110 RGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQVNVSP 160
            G++  +ET+GT         W+ VSPK             ++   E+K  V  + ++  
Sbjct: 111 LGYQCQIETSGTYHVKCSAATWVTVSPKVNMRGGYRILQQALQRANEIKYPVARERDIEA 170

Query: 161 ENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + +            +LQP+     EE T L I  C     WR S+QTHK++ I
Sbjct: 171 LDELLATLNDNSSRIIALQPISQK--EEATRLCIETCIAR-NWRFSMQTHKYLNI 222


>gi|283479535|emb|CAY75451.1| Uncharacterized protein ygcF [Erwinia pyrifoliae DSM 12163]
          Length = 277

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 95/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y I E+F TLQGEG + G  A+F R  GC +            C +CDT           
Sbjct: 57  YPINEMFQTLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLADRE 105

Query: 57  ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                     ++    G  +   L + I     T     ++ V+TGGEP +    PL  A
Sbjct: 106 TSLGDILLKTVETDAWGAADAPALLETIRRHGWTA----KHIVITGGEPCIYDLTPLTAA 161

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL-VFPQVN 157
           L   GF   +ET+GT +       W+ VSPK          +  +    E+K  V  Q +
Sbjct: 162 LQDSGFSCQIETSGTHQVRCTAQTWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQRD 221

Query: 158 VSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           V   + +            +LQP+      + T L I  C     WRLS+QTHK++ I
Sbjct: 222 VDALDELLATLNDNKARIIALQPISQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 276


>gi|291086244|ref|ZP_06355196.2| radical SAM domain protein [Citrobacter youngae ATCC 29220]
 gi|291068637|gb|EFE06746.1| radical SAM domain protein [Citrobacter youngae ATCC 29220]
          Length = 242

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 97/238 (40%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 22  YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLEDRE 70

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I+ Q        R+ V+TGGEP +   +PL   
Sbjct: 71  VSLYSILAKTKESDKWGAASSEDLLAVIQRQG----YTARHVVITGGEPCIHDLMPLTDL 126

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155
           L K GF   +ET+GT E       W+ VSPK             ++   E+K    +   
Sbjct: 127 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRD 186

Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    E       ++    +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 187 IEALDELLATLSDDKPRIIALQPISQK--EDATRLCIDTCIA-CNWRLSMQTHKYLNI 241


>gi|238797157|ref|ZP_04640659.1| hypothetical protein ymoll0001_8670 [Yersinia mollaretii ATCC
           43969]
 gi|238719004|gb|EEQ10818.1| hypothetical protein ymoll0001_8670 [Yersinia mollaretii ATCC
           43969]
          Length = 229

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 92/241 (38%), Gaps = 49/241 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI--- 57
           + LY I E+F TLQGEG   G  A+F R  GC +            C +CDT        
Sbjct: 6   LMLYPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKEA 54

Query: 58  --------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
                         +    G     QL D+  +Q        R+ V+TGGEP +    PL
Sbjct: 55  DREVDMQRIMVKTAESDAWGSATEQQLLDIFSQQG----YTARHVVITGGEPSIYDLRPL 110

Query: 104 IQALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKL---- 151
              L + G+   +ET+GT E       W+ VSPK             ++   E+K     
Sbjct: 111 TSLLEQGGYSCQIETSGTHEVQCSATTWVTVSPKVNMRGGLKVLPQALQRADEIKHPVGR 170

Query: 152 --VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
                 +               +LQP+     E+ T L I  C     WRLS+QTHK++ 
Sbjct: 171 LRDIEALEALLATLHDDKKRIIALQPISQK--EDATKLCIETCIAK-NWRLSMQTHKYLN 227

Query: 210 I 210
           I
Sbjct: 228 I 228


>gi|317049298|ref|YP_004116946.1| Radical SAM domain-containing protein [Pantoea sp. At-9b]
 gi|316950915|gb|ADU70390.1| Radical SAM domain protein [Pantoea sp. At-9b]
          Length = 223

 Score =  232 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 96/238 (40%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y I E+F TLQGEG + G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGFYTGVPALFIRLQGCPV-----------GCSWCDTKHTWEKLADRE 51

Query: 57  ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                     ++    G  +   L D I+ Q  T     R+ V+TGGEP +    PL  A
Sbjct: 52  TSLGDILVKTVESDAWGNADAAMLIDTIQRQGWTA----RHVVITGGEPAIYDLRPLTSA 107

Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155
           L   GF   +ET+GT E       W+ VSPK             ++   E+K    +   
Sbjct: 108 LEAAGFACQIETSGTHEIRCSDSTWVTVSPKVNMRGGYDVLPQALQRADEIKHPVARVRD 167

Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           V        G   E+    +LQP+     +  T L I  C     WRLS+QTHK++ I
Sbjct: 168 VEALDALLAGLHDEKKRIIALQPISR--GDAATKLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|312171327|emb|CBX79586.1| Uncharacterized protein ygcF [Erwinia amylovora ATCC BAA-2158]
          Length = 223

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 95/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y I E+F TLQGEG + G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGVYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLANRE 51

Query: 57  ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                     ++    G  +   L + I     T     ++ V+TGGEP +    PL  A
Sbjct: 52  TSLGDILLKTVESDAWGAADAPALLETIRRHGWTA----KHIVITGGEPCIYDLTPLTAA 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL-VFPQVN 157
           L   GF   +ET+GT E       W+ VSPK          +  +    E+K  V  Q +
Sbjct: 108 LQGSGFSCQIETSGTHEVHCTAETWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQRD 167

Query: 158 VSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           V   + +            +LQP+      + T L I  C     WRLS+QTHK++ I
Sbjct: 168 VDALDDLLATLSDNKARIIALQPVSQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222


>gi|331648502|ref|ZP_08349590.1| putative Organic radical activating enzyme [Escherichia coli M605]
 gi|331042249|gb|EGI14391.1| putative Organic radical activating enzyme [Escherichia coli M605]
          Length = 223

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 93/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLEDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLFSILAKTKESDKWGAASSEDLLVVIGRQG----YTARHVVITGGEPCIHDLLPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L K GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++              +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLTDDKPRVIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222


>gi|292487226|ref|YP_003530098.1| hypothetical protein EAMY_0740 [Erwinia amylovora CFBP1430]
 gi|291552645|emb|CBA19690.1| Uncharacterized protein ygcF [Erwinia amylovora CFBP1430]
          Length = 255

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 95/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y I E+F TLQGEG + G  A+F R  GC +            C +CDT           
Sbjct: 35  YPINEMFQTLQGEGVYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLANRE 83

Query: 57  ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                     ++    G  +   L + I     T     ++ V+TGGEP +    PL  A
Sbjct: 84  TSLGDILLKTVESDAWGAADAPALLETIRRHGWTA----KHIVITGGEPCIHDLTPLTAA 139

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL-VFPQVN 157
           L   GF   +ET+GT E       W+ VSPK          +  +    E+K  V  Q +
Sbjct: 140 LQGSGFSCQIETSGTHEVHCTAETWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQRD 199

Query: 158 VSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           V   + +            +LQP+      + T L I  C     WRLS+QTHK++ I
Sbjct: 200 VDALDDLLATLSDNKARIIALQPVSQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 254


>gi|161501996|ref|YP_001569108.1| hypothetical protein SARI_00012 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863343|gb|ABX19966.1| hypothetical protein SARI_00012 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 223

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 94/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q    +   R+ V+TGGEP +   +PL   
Sbjct: 52  VSLYSILAKTKESDKWGAASSEDLLTVINRQ----DYTARHVVITGGEPCIHDLMPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------V 152
           L K GF   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEKSGFSSQIETSGTHEVLCTPNTWVTVSPKVNMRGGYDVLTQALERANEIKHPVGRIRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++              +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|293392806|ref|ZP_06637124.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Serratia odorifera DSM 4582]
 gi|291424665|gb|EFE97876.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Serratia odorifera DSM 4582]
          Length = 223

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 94/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKEANRE 51

Query: 57  ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +    G    +QL ++++ Q        R+ V+TGGEP +   +PL + 
Sbjct: 52  VDMQRILVKTEESDAWGSATAEQLLEVVQRQG----YTARHIVITGGEPCIYDLIPLTKL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL------V 152
               G+   +ET+GT E       W+ VSPK      +K          E+K        
Sbjct: 108 FELNGYACQIETSGTHEILCTPSTWVTVSPKVNMRGGMKVLEQALMRADEIKHPVGRQRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              ++   +          +LQP+     +E T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALDALLDTLNDEKRRIIALQPISQK--DEATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|238761644|ref|ZP_04622619.1| hypothetical protein ykris0001_11220 [Yersinia kristensenii ATCC
           33638]
 gi|238700158|gb|EEP92900.1| hypothetical protein ykris0001_11220 [Yersinia kristensenii ATCC
           33638]
          Length = 223

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 97/238 (40%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKEADRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +    G  +  QL D+  +Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VDMQRIMVKTAESDLWGTASEQQLLDIFRQQG----YTARHVVITGGEPAIYDLLPLTSQ 107

Query: 107 LNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQVNV 158
           L + G+   +ET+GT E       W+ VSPK             ++   E+K    ++  
Sbjct: 108 LEQAGYSCQIETSGTHEVQCSATTWVTVSPKVNMRGGLKVLPQALQRADEIKHPVGRLRD 167

Query: 159 SPENYIGF-----DFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                +       D +R  +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALEVLLVTLTDDKKRIIALQPISQK--EDATKLCIETCIAK-NWRLSMQTHKYLNI 222


>gi|332160379|ref|YP_004296956.1| hypothetical protein YE105_C0757 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604386|emb|CBY25884.1| queuosine Biosynthesis QueE Radical SAM [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664609|gb|ADZ41253.1| hypothetical protein YE105_C0757 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859861|emb|CBX70192.1| uncharacterized protein ygcF [Yersinia enterocolitica W22703]
          Length = 223

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 94/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKAADRE 51

Query: 57  ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                     ++    G  +  QL D+  +Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VDMQRIMVKTVENDAWGTASEQQLLDIFLQQG----YTARHVVITGGEPAIYDLLPLTSQ 107

Query: 107 LNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQV-- 156
           L + G+   +ET+GT E       W+ VSPK             ++   E+K    ++  
Sbjct: 108 LEQAGYSCQIETSGTHEVQCSAATWVTVSPKVNMRGGLKILPQALQRADEIKHPVGRLRD 167

Query: 157 ----NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                              +LQP+     EE T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALEALLATLADDKKRIIALQPISQK--EEATKLCIETCIAK-NWRLSMQTHKYLNI 222


>gi|300718116|ref|YP_003742919.1| Putative organic radical activating enzyme [Erwinia billingiae
           Eb661]
 gi|299063952|emb|CAX61072.1| Putative organic radical activating enzyme [Erwinia billingiae
           Eb661]
          Length = 223

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 97/238 (40%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y I E+F TLQGEG + G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLADRE 51

Query: 57  ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                     ++    G  N   L  +I     T     R+ V+TGGEP +    PL   
Sbjct: 52  TSLGDILTKTVETDAWGSANAAALLAVIANHGWTA----RHIVITGGEPCIHDLTPLTAT 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL-VFPQVN 157
           L + GF   +ET+GT E       W+ VSPK          +  +    E+K  V  Q +
Sbjct: 108 LQQHGFSCQIETSGTHEVLCSAETWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQRD 167

Query: 158 VSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           V     +            +LQP+     ++ T L I  C ++  WRLS+QTHK++ I
Sbjct: 168 VEALQALLATLNDDKPRIIALQPISQK--DDATKLCIETCIKH-NWRLSMQTHKYLNI 222


>gi|123441108|ref|YP_001005097.1| hypothetical protein YE0753 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088069|emb|CAL10857.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 223

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 92/238 (38%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKEADRE 51

Query: 57  ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                     ++       +  QL ++  +Q        R+ V+TGGEP +    PL   
Sbjct: 52  VDMQRIMVKTVESDAWATASEQQLLNIFSQQG----YTARHVVITGGEPAIYDLFPLTTQ 107

Query: 107 LNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKL------V 152
           L + G+   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LEQAGYSCQIETSGTHEVQCSAATWVTVSPKVNMRGGLKVLPQALQRADEIKHPVGRLRD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              +    E          +LQP+     +E T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALEQLLETLTDDKKRIIALQPISQK--DEATKLCIETCIAK-NWRLSMQTHKYLNI 222


>gi|269138400|ref|YP_003295100.1| radical SAM domain protein [Edwardsiella tarda EIB202]
 gi|267984060|gb|ACY83889.1| radical SAM domain protein [Edwardsiella tarda EIB202]
 gi|304558427|gb|ADM41091.1| Queuosine Biosynthesis QueE Radical SAM [Edwardsiella tarda FL6-60]
          Length = 223

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 66/235 (28%), Positives = 97/235 (41%), Gaps = 43/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R  GC +            C +CD+     Q  +  
Sbjct: 3   YPINEIFQSLQGEGFYTGVPAVFIRLQGCPV-----------GCSWCDSQHTWHQRPEC- 50

Query: 64  RYNVDQLADLIEE--------------QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
           + ++ Q+ +   E                     + R+ V+TGGEP +   +PL  AL +
Sbjct: 51  QADLAQIVEKTAESEAWASADAAALVALLRQRGYQARHVVITGGEPCMHDLLPLTTALEQ 110

Query: 110 RGFEIAVETNGTIEPPQGI-DWICVSPKAGCDL-------KIKGGQELKLVFPQV----- 156
            G+   +ET+GT         W+ VSPK G           ++   E+K    +      
Sbjct: 111 GGYRCQIETSGTHPVRCSAQTWVTVSPKVGMRGGMTVLTDALRRANEIKHPVARARDIEA 170

Query: 157 -NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +       G      +LQP+     EE T L I  C     WRLS+QTHK++ I
Sbjct: 171 LDALLARLDGELPPVVALQPISCK--EEATRLCIETCLAR-NWRLSMQTHKYLNI 222


>gi|308187939|ref|YP_003932070.1| hypothetical protein Pvag_2457 [Pantoea vagans C9-1]
 gi|308058449|gb|ADO10621.1| Uncharacterized protein ygcF [Pantoea vagans C9-1]
          Length = 223

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 98/238 (41%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y I E+F TLQGEG + G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKRADRE 51

Query: 57  ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                     ++    G  +   L   IE+Q  T     R+ V+TGGEP +    PL   
Sbjct: 52  TSLGDILIKTVESDAWGDADASTLLRSIEQQGWTA----RHVVITGGEPAIYDLRPLTTI 107

Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155
           L + GF+  +ET+GT E       W+ VSPK             +    E+K    +   
Sbjct: 108 LEQHGFQCQIETSGTHEIHCSEQTWVTVSPKVNMRGGYDVLPQALSRADEIKHPVARQRD 167

Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           V+       G D  +    +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 168 VDALDGLLAGIDDTKARIIALQPISRK--DDATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|238750569|ref|ZP_04612069.1| hypothetical protein yrohd0001_3960 [Yersinia rohdei ATCC 43380]
 gi|238711217|gb|EEQ03435.1| hypothetical protein yrohd0001_3960 [Yersinia rohdei ATCC 43380]
          Length = 225

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 94/242 (38%), Gaps = 50/242 (20%)

Query: 1   MKL-YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-- 57
           M + Y I E+F TLQGEG   G  A+F R  GC +            C +CDT       
Sbjct: 1   MLMQYPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKA 49

Query: 58  ---------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
                          +    G  +  Q+ D+  +Q        R+ V+TGGEP +    P
Sbjct: 50  ANREVDLQRILVKTAESDAWGNASEQQVLDIFIQQG----YTARHVVITGGEPAIYDLRP 105

Query: 103 LIQALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKL--- 151
           L   L + G+   +ET+GT         W+ VSPK             ++   E+K    
Sbjct: 106 LTSHLEQAGYSCQIETSGTHAVQCSPTTWVTVSPKVNMRGGMKVLPQALQRADEIKHPVG 165

Query: 152 ---VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                  + +  +          +LQP+     E+ T L I  C     WRLS+QTHK++
Sbjct: 166 RLRDIEALELLLQTLDDDKKRIIALQPISQK--EDATKLCIETCIAK-NWRLSMQTHKYL 222

Query: 209 GI 210
            I
Sbjct: 223 NI 224


>gi|282878839|ref|ZP_06287606.1| radical SAM domain protein [Prevotella buccalis ATCC 35310]
 gi|281299047|gb|EFA91449.1| radical SAM domain protein [Prevotella buccalis ATCC 35310]
          Length = 199

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 77/217 (35%), Positives = 114/217 (52%), Gaps = 30/217 (13%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           + Y + EIF +LQGEG HAGR AVF RF+ CNL            C FCDT+F       
Sbjct: 6   RTYKVNEIFYSLQGEGHHAGRAAVFVRFAKCNL-----------HCWFCDTNFDTF---- 50

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
               +  Q+ + +++          + V+TGGEP LQV   L+Q  +  G+ +++ETNGT
Sbjct: 51  -TEMSAQQIIENVQQYA-----PCHFVVITGGEPTLQVTPELLQLFHIHGYYVSMETNGT 104

Query: 122 IEPPQGIDWICVSPKAGC----DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177
              P+G+DW+  SPK       D+ IK   E+K+V+    + P +  G + E   +QP D
Sbjct: 105 HPIPKGVDWVTCSPKKAFIEAGDVHIKQANEIKVVYD--GIHPISTFGIESEERYVQPCD 162

Query: 178 GPF---LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                  +E    AI +   +P+W+LS+Q HK IGI+
Sbjct: 163 VGDELRNKEIMQQAIQFVKTHPQWKLSLQLHKLIGIQ 199


>gi|167623866|ref|YP_001674160.1| radical SAM domain-containing protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167353888|gb|ABZ76501.1| Radical SAM domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 222

 Score =  231 bits (590), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 99/238 (41%), Gaps = 45/238 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56
           MK Y + E+F T+QGEG   G  AVF R  GC +            C +CDT        
Sbjct: 1   MK-YPVNEVFETIQGEGTFTGVPAVFVRLQGCPV-----------GCSWCDTKQTWELLE 48

Query: 57  -----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
                      + GT G R++     +L+      G    ++ V+TGGEP L     L Q
Sbjct: 49  ANHVAKELVIQVDGTIG-RWSELSAEELVNAFKDKGFN-AKHIVITGGEPCLYDLTELTQ 106

Query: 106 ALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDL-------KIKGGQELKLVFPQVN 157
            L+ +G++  +ET+GT +     D W+ VSPK             +    E+K      N
Sbjct: 107 YLHSQGYQTQIETSGTFDVLCHADTWVTVSPKVNMKGGYKVLAQALNRANEIKHPIATQN 166

Query: 158 VSPENY-----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              E       I    +   LQP+        T LA+S C     WRLS+QTHK++ I
Sbjct: 167 HIDELDELLEGIDLTDKTVCLQPISQK--ARATELAMSTCIAR-NWRLSIQTHKYLDI 221


>gi|291618623|ref|YP_003521365.1| YgcF [Pantoea ananatis LMG 20103]
 gi|291153653|gb|ADD78237.1| YgcF [Pantoea ananatis LMG 20103]
          Length = 223

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 97/238 (40%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y I E+F TLQGEG + G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKQADRE 51

Query: 57  ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                     ++    G  +   L   I +Q  T     R+ V+TGGEP +    PL  +
Sbjct: 52  TSLGDILVKTVESDAWGNADTATLLSSIAQQGWTA----RHAVITGGEPAIYDLRPLTAS 107

Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQVN 157
           L   GF+  +ET+GT E       W+ VSPK             +    E+K  V  Q +
Sbjct: 108 LEAAGFQCQIETSGTHEIHCSEQTWVTVSPKVNMRGGYDVLAQALSRADEIKHPVARQRD 167

Query: 158 VSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           V   + +            +LQP+     +E T L I  C     WRLS+QTHK++ I
Sbjct: 168 VEALDDLLAGIQDSKARIIALQPISRK--DEATKLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|24374045|ref|NP_718088.1| radical activating enzyme [Shewanella oneidensis MR-1]
 gi|24348519|gb|AAN55532.1|AE015692_2 radical activating enzyme [Shewanella oneidensis MR-1]
          Length = 222

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 93/235 (39%), Gaps = 44/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y + E+F T+QGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDLLETNK 51

Query: 57  --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                   + GT G   N    A  + E +       R+ V+TGGEP +     L   L+
Sbjct: 52  VSPEQVITVDGTVGRWAN--HTAQSLIEAFHAKGYTARHVVITGGEPCMYDLHELTHMLH 109

Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDL-------KIKGGQELKLVFPQVNVSP 160
           + GF   +ET+GT E     D W+ VSPK             +    E+K      N   
Sbjct: 110 RAGFATQIETSGTFEVKCDKDTWVTVSPKVNMKGGYPVLAQALNRANEIKHPIATQNHID 169

Query: 161 E-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E     + I    +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 170 ELDELLSDIDVSAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221


>gi|114047413|ref|YP_737963.1| radical activating enzyme [Shewanella sp. MR-7]
 gi|113888855|gb|ABI42906.1| radical activating enzyme [Shewanella sp. MR-7]
          Length = 222

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 92/235 (39%), Gaps = 44/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y + E+F T+QGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDLLEENK 51

Query: 57  --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                   + G+ G   N    A  + E +       R+ V+TGGEP +     L  AL+
Sbjct: 52  VSPEQVITVDGSVGRWAN--HTAQSLIEAFNAKGYTARHVVITGGEPCMYDLNELTHALH 109

Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDL-------KIKGGQELKLVFPQVNVSP 160
             GF   +ET+GT E     D W+ VSPK             +    E+K      N   
Sbjct: 110 AAGFATQIETSGTFEVKCDADTWVTVSPKINMKGGYQVLAQALIRANEIKHPIATENHID 169

Query: 161 ENY-----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E       I    +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 170 ELDELLKGIDVSAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221


>gi|238786798|ref|ZP_04630599.1| hypothetical protein yfred0001_17670 [Yersinia frederiksenii ATCC
           33641]
 gi|238725166|gb|EEQ16805.1| hypothetical protein yfred0001_17670 [Yersinia frederiksenii ATCC
           33641]
          Length = 223

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 94/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKDANRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +    G     QL D+  +Q        R+ V+TGGEP +    PL   
Sbjct: 52  VDMQRIMVKTAESDAWGTATEQQLLDIFIQQG----YTARHVVITGGEPAIYDLFPLTSH 107

Query: 107 LNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155
           L + G+   +ET+GT E       W+ VSPK             ++   E+K    +   
Sbjct: 108 LEQAGYSCQIETSGTHEVQCSATTWVTVSPKVNMRGGLKVLPQALQRADEIKHPVGRLRD 167

Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +          D ++    +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 168 IEALEALLATLDDDKKRIIALQPISQK--EDATKLCIETCIVK-NWRLSMQTHKYLNI 222


>gi|85058492|ref|YP_454194.1| hypothetical protein SG0514 [Sodalis glossinidius str. 'morsitans']
 gi|84779012|dbj|BAE73789.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 223

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 65/238 (27%), Positives = 94/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y + EIF TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPLNEIFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCSWCDTKHTWQQDEAER 51

Query: 57  ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                        ++      +++  L+ +Q  T     R+ V+TGGEP L   +PL   
Sbjct: 52  VTAGEIPLKTADSSRWASITAEEIIALMVKQGWTA----RHVVITGGEPCLHDLMPLTHT 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL------V 152
           L ++GF   +ET+GT E       W+ VSPK      +           E+K        
Sbjct: 108 LEQQGFSCQIETSGTQEIHCTPQTWVTVSPKINMRGGLPVLAQALGRSDEIKHPAARQSD 167

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             +++              +LQP+     E  T L I  C     WRLS+QTHK++ I
Sbjct: 168 IDELDALLATLHDTKQRVIALQPISQK--EAATRLCIETCIAR-NWRLSMQTHKYLNI 222


>gi|113970395|ref|YP_734188.1| radical activating enzyme [Shewanella sp. MR-4]
 gi|113885079|gb|ABI39131.1| radical activating enzyme [Shewanella sp. MR-4]
          Length = 222

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 66/235 (28%), Positives = 91/235 (38%), Gaps = 44/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y + E+F T+QGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWGLLEENK 51

Query: 57  --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                   + G+ G   N    A  + E +       R+ V+TGGEP +     L   L+
Sbjct: 52  VSPQQVITVDGSVGRWAN--HTAQSLIEAFNAKGYTARHVVITGGEPCMYDLNELTHTLH 109

Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDL-------KIKGGQELKLVFPQVNVSP 160
             GF   +ET+GT E     D W+ VSPK             +    E+K      N   
Sbjct: 110 AAGFATQIETSGTFEVKCDADTWVTVSPKVNMKGGYQVLAQALTRANEIKHPIATENHID 169

Query: 161 ENY-----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E       I    +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 170 ELDELLKGIDVSVKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221


>gi|262171605|ref|ZP_06039283.1| queuosine Biosynthesis QueE Radical SAM [Vibrio mimicus MB-451]
 gi|261892681|gb|EEY38667.1| queuosine Biosynthesis QueE Radical SAM [Vibrio mimicus MB-451]
          Length = 222

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 95/236 (40%), Gaps = 43/236 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56
           +Y I E+F T+QGEG   G  AVF R  GC +            C +CDT          
Sbjct: 1   MYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLESD 49

Query: 57  --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                   ++ +    +      D+IE     G  + ++ V+TGGEP +     L QA  
Sbjct: 50  QTSFPQILLKTSDAPTWCQASAQDVIERYRAQG-YQAKHIVITGGEPCIYDLTELTQAFE 108

Query: 109 KRGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
             G +  +ET+GT E       W+ VSPK     K+           E+K  V  + ++ 
Sbjct: 109 AIGCQCQIETSGTYEILATPTTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 168

Query: 160 PENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             + +            +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 169 NLDELLVRASVDAKTVIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 221


>gi|282600228|ref|ZP_05973516.2| radical SAM domain protein [Providencia rustigianii DSM 4541]
 gi|282566364|gb|EFB71899.1| radical SAM domain protein [Providencia rustigianii DSM 4541]
          Length = 230

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 94/239 (39%), Gaps = 44/239 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-- 58
           MK Y I EIF TLQGEG   G  AVF R  GC +            C +CDT     +  
Sbjct: 8   MK-YPINEIFQTLQGEGVFTGVPAVFIRLQGCPV-----------GCSWCDTKQTWDKEP 55

Query: 59  -----------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
                       T+         A+ + +         ++ V+TGGEP +    PL + L
Sbjct: 56  AKESTLGDIALKTQDNDLWAMADAEALIQLMQQSGYTAKHIVITGGEPCIYDLNPLTETL 115

Query: 108 NKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCDLKIK-------GGQELKLVFPQVNVS 159
              GF+  +ET+GT         W+ VSPK G    +K          E+K    +    
Sbjct: 116 ETNGFQCQIETSGTYPILCTEKTWVTVSPKVGMKGGLKVLNQAVDRANEIKHPVAREK-D 174

Query: 160 PENYIGFDFER-------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            E        R        +LQP+        T L I  C Q   WRLS+QTHK++ I+
Sbjct: 175 IEALDQLLARRTNNAPLIVALQPISQKVS--ATKLCIDTCIQR-NWRLSIQTHKYLNIQ 230


>gi|262165604|ref|ZP_06033341.1| queuosine Biosynthesis QueE Radical SAM [Vibrio mimicus VM223]
 gi|262025320|gb|EEY43988.1| queuosine Biosynthesis QueE Radical SAM [Vibrio mimicus VM223]
          Length = 222

 Score =  229 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 95/236 (40%), Gaps = 43/236 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56
           +Y I E+F T+QGEG   G  AVF R  GC +            C +CDT          
Sbjct: 1   MYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLESD 49

Query: 57  --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                   ++ +    +      D+IE     G  + ++ V+TGGEP +     L QA  
Sbjct: 50  QTSFPQILLKTSDAPTWCQASAQDVIERYRAQG-YQAKHIVITGGEPCIYDLTELTQAFA 108

Query: 109 KRGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
             G +  +ET+GT E       W+ VSPK     K+           E+K  V  + ++ 
Sbjct: 109 AIGCQCQIETSGTYEILATPTTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 168

Query: 160 PENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             + +            +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 169 NLDELLVRASVDAKTVIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 221


>gi|218709344|ref|YP_002416965.1| organic radical activating enzyme [Vibrio splendidus LGP32]
 gi|218322363|emb|CAV18509.1| Organic radical activating enzyme [Vibrio splendidus LGP32]
          Length = 222

 Score =  229 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 94/236 (39%), Gaps = 43/236 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56
           +Y I E+F T+QGEG   G  AVF R   C +            C +CDT          
Sbjct: 1   MYKINEMFETIQGEGVFTGVPAVFVRLQICPV-----------GCSWCDTKQTWEALPED 49

Query: 57  --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                   ++      +       ++ E    G    ++ V+TGGEP +   VPL +A  
Sbjct: 50  ETSLGDIMVKTEDSPTWTAIDAQGIVNEYIKQG-YTAKHIVITGGEPCIYDLVPLTEAFE 108

Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKL------VFP 154
           + G    +ET+GT E     D W+ VSPK     K+           E+K          
Sbjct: 109 QHGCRCQIETSGTSEVKATPDTWVTVSPKVSMKAKLDILDSALVRANEIKHPVGTGKDIE 168

Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           Q++         +    +LQP+     E  T L I  C +   WRLS+QTHK++ I
Sbjct: 169 QLDALIARADVPENTVIALQPISQK--ERATQLCIDTCIER-NWRLSIQTHKYLSI 221


>gi|154490137|ref|ZP_02030398.1| hypothetical protein PARMER_00367 [Parabacteroides merdae ATCC
           43184]
 gi|154089029|gb|EDN88073.1| hypothetical protein PARMER_00367 [Parabacteroides merdae ATCC
           43184]
          Length = 180

 Score =  229 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 76/208 (36%), Positives = 101/208 (48%), Gaps = 29/208 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGEG H G  AVF RFSGCNL           +C FCDT        +G
Sbjct: 1   MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------KCSFCDTRH-----EEG 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              + + +   I              +LTGGEP L +D   I  L+  G  I +ETNGT 
Sbjct: 45  ILMSDEDILQAISA------FPSNVVILTGGEPSLWIDQTFIDLLHMAGKYICIETNGTN 98

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
             P+GIDW+  SPK G  L++    E+K+V+   +++   Y G       LQP       
Sbjct: 99  PLPEGIDWVTCSPK-GFPLRLTHIDEIKVVYTGQDLT--EYAGLKATWHFLQPCSCL--- 152

Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            NT   + Y   +P+W LS+QTHK I I
Sbjct: 153 -NTKEVVEYILHHPQWHLSLQTHKLIDI 179


>gi|294141101|ref|YP_003557079.1| radical activating enzyme [Shewanella violacea DSS12]
 gi|293327570|dbj|BAJ02301.1| radical activating enzyme [Shewanella violacea DSS12]
          Length = 222

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 97/238 (40%), Gaps = 45/238 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56
           MK Y + E+F T+QGEG   G  A+F R  GC +            C +CDT        
Sbjct: 1   MK-YPVNEVFETIQGEGFFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWDVLE 48

Query: 57  -----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
                      + G  G R++      LI      G     + V+TGGEP +     L  
Sbjct: 49  KNRVAPELVIQVDGEIG-RWSELTAEALINSFIRKG-FSANHVVITGGEPCIHDLTELTS 106

Query: 106 ALNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCD-------LKIKGGQELKL-VFPQV 156
            LN +G+   +ET+GT E       W+ VSPK             ++   E+K  V    
Sbjct: 107 QLNSQGYATQIETSGTFEVICSDKTWVTVSPKVNMKAGMAVLTQALERADEIKHPVATSK 166

Query: 157 NVSPENY----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           ++   +     I  D +   LQP+        T LA+  C +   WRLS+QTHK++ I
Sbjct: 167 HIDDLDELLEGIELDGKTICLQPISQK--PRATELAMKTCIER-NWRLSIQTHKYLNI 221


>gi|260768533|ref|ZP_05877467.1| queuosine Biosynthesis QueE Radical SAM [Vibrio furnissii CIP
           102972]
 gi|260616563|gb|EEX41748.1| queuosine Biosynthesis QueE Radical SAM [Vibrio furnissii CIP
           102972]
          Length = 246

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 65/237 (27%), Positives = 96/237 (40%), Gaps = 43/237 (18%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
            LY + E+F T+QGEG   G  AVF R   C +            C +CDT         
Sbjct: 24  TLYKVNEMFETIQGEGVFTGVPAVFVRLQECPV-----------GCAWCDTKQTWDAAPA 72

Query: 62  GGRYNVDQL--------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
             R + D++              A  I E++       ++ V+TGGEP +   VPL QA 
Sbjct: 73  DER-SFDEILVKTEDNPNWCSASAQQIIERYRAQGYTAKHIVITGGEPCIYDLVPLTQAF 131

Query: 108 NKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL-VFPQVNV 158
              G    +ET+GT         W+ VSPK          D+ ++   E+K  V  + ++
Sbjct: 132 EAIGCRCQIETSGTFAVQATENTWVTVSPKVAMKGKLPVVDVALQRANEIKHPVATEKDI 191

Query: 159 SPENYIGFDF-----ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              + +            +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 192 DNLDQLLARAGVPATTVVALQPISQK--PRATQLCIDTCIAR-NWRLSIQTHKYLSI 245


>gi|300724656|ref|YP_003713981.1| putative coenzyme PQQ synthesis protein with nitrogenase
           iron-molybdenum domain [Xenorhabdus nematophila ATCC
           19061]
 gi|297631198|emb|CBJ91893.1| putative coenzyme PQQ synthesis protein with nitrogenase
           iron-molybdenum domain [Xenorhabdus nematophila ATCC
           19061]
          Length = 223

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 94/240 (39%), Gaps = 49/240 (20%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
            +Y I EIF TLQGEG   G  +VF R  GC +            C +CDT         
Sbjct: 1   MIYPINEIFQTLQGEGVFTGVPSVFVRLQGCPV-----------GCSWCDTKHTWEKDAD 49

Query: 58  -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
                             G     QL ++   Q        R+ V+TGGEP L    PL 
Sbjct: 50  KQQVMENILLKTRDSDLWGVATAKQLINIFTRQG----YSARHIVITGGEPCLYDLRPLT 105

Query: 105 QALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ- 155
           + L + G++  +ET+GT         W+ VSPK             +K   E+K    + 
Sbjct: 106 ETLEREGYQCQIETSGTHSIQCSDKTWVTVSPKVKMRGGYKVLPEAMKRADEIKHPVGRE 165

Query: 156 --VNVSPENYIGFDFE---RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             +    E  +  D +     +LQP+     EE T L I  C     WR S+QTHK++ I
Sbjct: 166 RDIEALDELLVMLDGKSSPVIALQPISQK--EEATRLCIETCIAR-NWRFSMQTHKYLHI 222


>gi|157962169|ref|YP_001502203.1| radical SAM domain-containing protein [Shewanella pealeana ATCC
           700345]
 gi|157847169|gb|ABV87668.1| Radical SAM domain protein [Shewanella pealeana ATCC 700345]
          Length = 222

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 104/238 (43%), Gaps = 45/238 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56
           MK Y + E+F T+QGEG H G  A+F R  GC +            C +CDT        
Sbjct: 1   MK-YPVNEVFETIQGEGTHTGVPAIFVRLQGCPV-----------GCSWCDTKQTWELLE 48

Query: 57  -----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
                      + GT G R++   +  L+      G    +  V+TGGEP L     L Q
Sbjct: 49  DNRVAPDLVIQVDGTVG-RWSELTVEQLVSAFEDKG-FTAKLVVITGGEPCLYDLSELTQ 106

Query: 106 ALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDL-------KIKGGQELKL-VFPQV 156
            L+ +G++  +ET+GT +     D W+ VSPK             +    E+K  V  Q 
Sbjct: 107 YLHAQGYQTQIETSGTFDVLCHPDTWVTVSPKVNMKGGYAVLAQALNRANEIKHPVATQK 166

Query: 157 NVSPENYIGFDF----ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           ++   + +  D     +   LQP+    +   T LA+  C +   WRLSVQTHK++ I
Sbjct: 167 HIDELDLLLEDINLTGKTVCLQPISQ--IPRATELAMKTCIER-NWRLSVQTHKYLNI 221


>gi|315180245|gb|ADT87159.1| Organic radical activating enzyme [Vibrio furnissii NCTC 11218]
          Length = 246

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 65/237 (27%), Positives = 97/237 (40%), Gaps = 43/237 (18%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
            LY + E+F T+QGEG   G  AVF R   C +            C +CDT         
Sbjct: 24  TLYKVNEMFETIQGEGVFTGVPAVFVRLQECPV-----------GCAWCDTKQTWDAAPA 72

Query: 62  GGRYNVDQL--------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
             R + D++              A  I E++       ++ V+TGGEP +   VPL QA 
Sbjct: 73  DER-SFDEILVKTEDNPNWCSASAQQIIERYRAQGYTAKHIVITGGEPCIYDLVPLTQAF 131

Query: 108 NKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL-VFPQVNV 158
              G    +ET+GT         W+ VSPK          D+ ++   E+K  V  + ++
Sbjct: 132 EAIGCRCQIETSGTFAVQATENTWVTVSPKVAMKGKLPVVDVALQRANEIKHPVATEKDI 191

Query: 159 SPENYIGF-----DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              + +       +    +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 192 DNLDQLLARAGVPETTVVALQPISQK--PRATQLCIDTCIAR-NWRLSIQTHKYLSI 245


>gi|117920607|ref|YP_869799.1| radical activating enzyme [Shewanella sp. ANA-3]
 gi|117612939|gb|ABK48393.1| radical activating enzyme [Shewanella sp. ANA-3]
          Length = 222

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 66/237 (27%), Positives = 90/237 (37%), Gaps = 48/237 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y + E+F T+QGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDLLEEKK 51

Query: 57  --------IQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                   + G+ G    +    L D    +        R+ V+TGGEP +     L   
Sbjct: 52  VSPEQVITVDGSVGRWANHTAQSLIDAFNAKG----YTARHVVITGGEPCMYDLNELTHT 107

Query: 107 LNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKLVFPQVNV 158
           L+  GF   +ET+GT E     D W+ VSPK       K          E+K      N 
Sbjct: 108 LHAAGFATQIETSGTFEVKCDADTWVTVSPKINMKGGYKVLAQALIRANEIKHPIATENH 167

Query: 159 SPENY-----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             E       I    +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 168 IDELDELLKGIDVSAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221


>gi|188026339|ref|ZP_02961731.2| hypothetical protein PROSTU_03780 [Providencia stuartii ATCC 25827]
 gi|188022533|gb|EDU60573.1| hypothetical protein PROSTU_03780 [Providencia stuartii ATCC 25827]
          Length = 230

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 97/248 (39%), Gaps = 57/248 (22%)

Query: 1   MKL------YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF 54
           M +      Y I EIF TLQGEG   G  AVF R  GC +            C +CDT  
Sbjct: 1   MTMPESAMNYPINEIFQTLQGEGVFTGVPAVFIRLQGCPV-----------GCSWCDTKH 49

Query: 55  VG-----------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
                              +        +  +L +L+++Q        ++ V+TGGEP +
Sbjct: 50  TWEKEESKATTLGDIALKTVDTDTWALADSHELINLMKKQG----YTAKHIVITGGEPCI 105

Query: 98  QVDVPLIQALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGCD-------LKIKGGQEL 149
              +PL   L  +G++  +ET+GT         W+ VSPK G           I    E+
Sbjct: 106 YDLLPLTCELENQGYQCQIETSGTYPIQCSDKTWVTVSPKVGMKGGLQVLTESINRANEI 165

Query: 150 KLVFPQVNVSPENYIGFDFER-------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
           K    +     E       +R        +LQP+    L   T L I  C     WRLS+
Sbjct: 166 KHPVAREK-DIEELDKLLAKRTEKHAPVVALQPISQKSL--ATKLCIDTCIAR-NWRLSI 221

Query: 203 QTHKFIGI 210
           QTHK++ I
Sbjct: 222 QTHKYLNI 229


>gi|304408669|ref|ZP_07390290.1| Radical SAM domain protein [Shewanella baltica OS183]
 gi|307305498|ref|ZP_07585246.1| Radical SAM domain protein [Shewanella baltica BA175]
 gi|304352490|gb|EFM16887.1| Radical SAM domain protein [Shewanella baltica OS183]
 gi|306911801|gb|EFN42226.1| Radical SAM domain protein [Shewanella baltica BA175]
          Length = 222

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 92/235 (39%), Gaps = 44/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y + E+F T+QGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDVLEVNK 51

Query: 57  --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                   + GT G     D  A  +   +       R+ V+TGGEP +     L + L+
Sbjct: 52  VTPEQVISVDGTIGRW--ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLRELTETLH 109

Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDL-------KIKGGQELKLVFPQVNVSP 160
            +GF   +ET+GT +     D W+ VSPK             +    E+K      N   
Sbjct: 110 NQGFATQIETSGTFDINCADDTWVTVSPKVNMKGGYKVLTQALNRANEIKHPIATENHIA 169

Query: 161 E-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E       I    +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 170 ELDELLQDIDISAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221


>gi|332140739|ref|YP_004426477.1| radical activating enzyme [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550761|gb|AEA97479.1| radical activating enzyme [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 224

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 102/239 (42%), Gaps = 43/239 (17%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56
           M   +I E+F T+QGEG H G  ++F R  GC +            C +CDT        
Sbjct: 1   MSTLNINEMFETIQGEGAHTGVPSIFVRLQGCPV-----------GCPWCDTKHTWEIKP 49

Query: 57  ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +G +   Y +   +DL+ +    G    ++ V+TGGEP +    PL   
Sbjct: 50  DLSVTPEAVITKGQESETYFISNESDLLTQFGHEG-YVAKHVVITGGEPCMYDLRPLTTL 108

Query: 107 LNKRGFEIAVETNGTIEPPQG-IDWICVSPKAGCDL-------KIKGGQELKL------V 152
           L+ +G+   +ET+GT E       ++ VSPK             ++   E+K        
Sbjct: 109 LHDKGYTTQIETSGTFEILCDERTYVTVSPKINMKGGYDVLISALERANEIKHPIAMQKH 168

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             +++    N      ++  LQP+     +  T LA+  C +   WRLS+QTHK+IGI 
Sbjct: 169 IDELDALLANVSSLKGKQVCLQPISQ--QKRATELAVRTCIER-NWRLSLQTHKYIGIE 224


>gi|89073954|ref|ZP_01160460.1| putative organic radical activating enzyme [Photobacterium sp.
           SKA34]
 gi|89050282|gb|EAR55786.1| putative organic radical activating enzyme [Photobacterium sp.
           SKA34]
          Length = 222

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 95/236 (40%), Gaps = 43/236 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y I E+F T+QGEG   G  A+F R   C +            C +CDT          
Sbjct: 1   MYKINEVFETIQGEGVFTGVPAIFVRLQVCPV-----------GCSWCDTKQTWT-AEPQ 48

Query: 63  GRYNVDQL--------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
              N+DQ+              A+ + +     +   ++ V+TGGEP +    PL QAL 
Sbjct: 49  DLANLDQIMAKTGDSPLWTNLDANGVVQLLQDQKYTAKHVVITGGEPCIYDLRPLTQALE 108

Query: 109 KRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDLKIK-------GGQELKL------VFP 154
             GF   +ET+GT +       W+ VSPK     K+           E+K          
Sbjct: 109 DAGFNCQIETSGTSDIQTSENTWVTVSPKINMKAKLPVLVSSLARANEIKHPVGTSKDIE 168

Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           Q++   +          +LQP+        T L I  C Q   WRLS+QTHK++ I
Sbjct: 169 QLDALIDGVTLKPDVTIALQPISQK--PRATELCIETCIQR-NWRLSIQTHKYLAI 221


>gi|288799933|ref|ZP_06405392.1| GntS [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333181|gb|EFC71660.1| GntS [Prevotella sp. oral taxon 299 str. F0039]
          Length = 192

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 78/212 (36%), Positives = 105/212 (49%), Gaps = 30/212 (14%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + EIF TLQGEG H GR AVF RF+GCNL            C FCDT            
Sbjct: 2   RVNEIFYTLQGEGAHTGRAAVFLRFAGCNLT-----------CSFCDTQH--------ET 42

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           Y      +++       +    + V+TGGEP +Q+   LI  L+  G ++ +ETNGTI P
Sbjct: 43  YTSMSEEEIV---ISINKFPSTWVVITGGEPTIQLTESLIHKLHAIGKKVQIETNGTIIP 99

Query: 125 PQGIDWICVSPK----AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
           P   DWI VSPK       ++K +   ELK+V+   N +   Y     + + LQP D   
Sbjct: 100 PPNTDWITVSPKFEYCKRAEIKAERINELKVVYDGSN-NMSVYETIKADHYFLQPCDLQD 158

Query: 181 LEENTNLA---ISYCFQNPKWRLSVQTHKFIG 209
             +N  +    I Y  +NPKWRLS+QTHK + 
Sbjct: 159 ETKNKKIINQVIEYIKKNPKWRLSLQTHKILN 190


>gi|261210910|ref|ZP_05925200.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. RC341]
 gi|260839885|gb|EEX66485.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. RC341]
          Length = 222

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 96/236 (40%), Gaps = 43/236 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56
           +Y I E+F T+QGEG   G  AVF R  GC +            C +CDT          
Sbjct: 1   MYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWESLDAD 49

Query: 57  --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                   ++ +    +      D+++     G  + ++ V+TGGEP +     L QA  
Sbjct: 50  QTSFSQILLKTSDAPTWCHASAQDVVQRYQTQG-YQAKHIVITGGEPCIYDLTELTQAFE 108

Query: 109 KRGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
             G    +ET+GT E     + W+ VSPK     K+           E+K  V  + ++ 
Sbjct: 109 SIGCHCQIETSGTYEVRATPLTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 168

Query: 160 PENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             + +    +       +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 169 NLDELLVRAKVTEKTVVALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 221


>gi|260772755|ref|ZP_05881671.1| queuosine Biosynthesis QueE Radical SAM [Vibrio metschnikovii CIP
           69.14]
 gi|260611894|gb|EEX37097.1| queuosine Biosynthesis QueE Radical SAM [Vibrio metschnikovii CIP
           69.14]
          Length = 224

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 93/238 (39%), Gaps = 43/238 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M LY + EIF T+QGEG   G  AVF R   C +            C +CDT        
Sbjct: 1   MTLYKVNEIFETIQGEGVFTGVPAVFVRLQQCPV-----------GCAWCDTKQTW-DAE 48

Query: 61  KGGRYNVDQL--------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
              + + +Q+              A+ I  Q+       ++ V+TGGEP L   VPL +A
Sbjct: 49  PQDQRSFEQIIVKQGDSPTWCQGSAEQIVAQYQQQGYTAKHIVITGGEPCLYDLVPLTEA 108

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL------V 152
               G +  +ET+GT E       W+ VSPK     K+           E+K        
Sbjct: 109 FEAIGCQCQIETSGTFEIKASAKTWVTVSPKIAMKGKLPIVPSALQRANEIKHPVGTEKD 168

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             Q+               +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 169 IAQLEALLAQVAISPDTIIALQPISQK--PRATQLCIETCITR-NWRLSIQTHKYLNI 223


>gi|126090177|ref|YP_001041658.1| hypothetical protein Sbal_4540 [Shewanella baltica OS155]
 gi|126174470|ref|YP_001050619.1| radical activating enzyme [Shewanella baltica OS155]
 gi|125997675|gb|ABN61750.1| radical activating enzyme [Shewanella baltica OS155]
 gi|125999833|gb|ABN63903.1| hypothetical protein Sbal_4540 [Shewanella baltica OS155]
          Length = 222

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 92/235 (39%), Gaps = 44/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y + E+F T+QGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDVLEVNK 51

Query: 57  --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                   + GT G     D  A  +   +       R+ V+TGGEP +     L + L+
Sbjct: 52  VMPEQVISVDGTIGRW--ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLCELTETLH 109

Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDL-------KIKGGQELKLVFPQVNVSP 160
            +GF   +ET+GT +     D W+ VSPK             +    E+K      N   
Sbjct: 110 SQGFATQIETSGTFDINCADDTWVTVSPKVNMKGGYKVLTQALNRANEIKHPIATENHIA 169

Query: 161 E-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E       I    +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 170 ELDELLQDIDISAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221


>gi|238919074|ref|YP_002932588.1| hypothetical protein NT01EI_1143 [Edwardsiella ictaluri 93-146]
 gi|238868642|gb|ACR68353.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 223

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 96/235 (40%), Gaps = 43/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I E+F +LQGEG + G  A+F R  GC +            C +CD+     Q  +  
Sbjct: 3   YPINEVFQSLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDSQHTWHQRPE-R 50

Query: 64  RYNVDQLADLIEE--------------QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
           + ++ Q+ +   E                     + R  V+TGGEP +   +PL  AL +
Sbjct: 51  QADLAQIVEKTAESEAWASADAAALVALLRQRGYQARRVVITGGEPCMYDLLPLTTALEQ 110

Query: 110 RGFEIAVETNGTIEPPQGI-DWICVSPKAGCDL-------KIKGGQELKLVFPQV----- 156
            G+   +ET+GT         W+ VSPK G           ++   E+K    +      
Sbjct: 111 GGYRCQIETSGTHPVRCSAQTWVTVSPKVGMRGGMEVLTDALRRANEIKHPVARARDIEA 170

Query: 157 -NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +       G      +LQP+     EE T L I  C     WRLS+QTHK++ I
Sbjct: 171 LDALLARLDGELPPVVALQPISCK--EEATRLCIETCLAR-NWRLSMQTHKYLNI 222


>gi|212711380|ref|ZP_03319508.1| hypothetical protein PROVALCAL_02452 [Providencia alcalifaciens DSM
           30120]
 gi|212686109|gb|EEB45637.1| hypothetical protein PROVALCAL_02452 [Providencia alcalifaciens DSM
           30120]
          Length = 223

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 98/238 (41%), Gaps = 42/238 (17%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-- 58
           MK Y I EIF TLQGEG   G  AVF R  GC +            C +CDT     +  
Sbjct: 1   MK-YPINEIFQTLQGEGVFTGVPAVFIRLQGCPV-----------GCSWCDTKQTWDKEP 48

Query: 59  -----------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
                       T+   +     A+ + +  +      ++ V+TGGEP +     L Q L
Sbjct: 49  AKESTLGDIALKTQDSDFWAMSDAESLIQLMLQNGYTAKHIVITGGEPCIYDLTALTQTL 108

Query: 108 NKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL-VFPQVNV 158
              GF+  +ET+GT         W+ VSPK G        +  I    E+K  V  + ++
Sbjct: 109 EANGFQCQIETSGTYPILCTENTWVTVSPKVGMKGGLQVLEQAINRANEIKHPVAREKDI 168

Query: 159 SPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
              + +            +LQP+        T L I  C Q   WRLS+QTHK++ I+
Sbjct: 169 EALDQLLSLRTQGQLPIVALQPISQKTS--ATKLCIDTCIQR-NWRLSIQTHKYLNIQ 223


>gi|329295553|ref|ZP_08252889.1| Radical SAM domain-containing protein [Plautia stali symbiont]
          Length = 223

 Score =  227 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 98/238 (41%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y I E+F TLQGEG + G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWETRADLE 51

Query: 57  ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                     ++    G  +   L + I+ Q  T     R+ V+TGGEP +    PL +A
Sbjct: 52  TSLGDILVKTVESDAWGSADAATLIETIQRQGWTA----RHLVITGGEPAIFDLRPLTEA 107

Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ--- 155
           L   GF+  +ET+GT E       W+ VSPK             ++   E+K    +   
Sbjct: 108 LETAGFQCQIETSGTHEVHCSAATWVTVSPKVNMRGGYDVLPQALQRADEIKHPVARERD 167

Query: 156 VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           V        G   E+    +LQP+     E  T L I  C     WRLS+QTHK++ I
Sbjct: 168 VEALDALLAGLQDEKKRIVALQPISR--GEAATRLCIETCIVR-NWRLSMQTHKYLNI 222


>gi|294635382|ref|ZP_06713876.1| radical SAM domain protein [Edwardsiella tarda ATCC 23685]
 gi|291091269|gb|EFE23830.1| radical SAM domain protein [Edwardsiella tarda ATCC 23685]
          Length = 249

 Score =  227 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 102/235 (43%), Gaps = 43/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  A+F R  GC +            C +CD+     Q     
Sbjct: 29  YPINEIFHSLQGEGFYTGLPAIFIRLQGCPV-----------GCSWCDSKHTWQQDAV-R 76

Query: 64  RYNVDQLADLIEE--QWITGE------------KEGRYCVLTGGEPLLQVDVPLIQALNK 109
           +  ++Q+ +   E   W + +               R+ V+TGGEP L   +PL  AL +
Sbjct: 77  QVALEQVVEKAAESDAWASADVATLCALLQQRGYAARHVVITGGEPCLHDLLPLTLALEQ 136

Query: 110 RGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQVNVSP 160
            G++  +ET+GT         W+ VSPK             ++   E+K  V  + +++ 
Sbjct: 137 AGYQCQIETSGTHPVRCSEQTWVTVSPKVAMRGGMAVLTSALRRANEIKHPVARERDIAA 196

Query: 161 ENYIGFDF-----ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + +         +  +LQP+     E  T L I  C     WRLS+QTHK++ I
Sbjct: 197 LDALLATLGEALPQVVALQPISCK--EGATRLCIDTCLAR-NWRLSMQTHKYLHI 248


>gi|90579565|ref|ZP_01235374.1| putative organic radical activating enzyme [Vibrio angustum S14]
 gi|90439139|gb|EAS64321.1| putative organic radical activating enzyme [Vibrio angustum S14]
          Length = 222

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 96/236 (40%), Gaps = 43/236 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y I E+F T+QGEG   G  A+F R   C +            C +CDT          
Sbjct: 1   MYKINEVFETIQGEGVFTGVPAIFVRLQVCPV-----------GCSWCDTKQTWT-AEPQ 48

Query: 63  GRYNVDQL--------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
              ++DQ+              A+ + +     +   ++ V+TGGEP +    PL QAL 
Sbjct: 49  DLVSLDQIMAKTGDSPLWTNLDANGVVQLLQDQKYTAKHVVITGGEPCIYDLRPLTQALE 108

Query: 109 KRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDLKIK-------GGQELKL------VFP 154
           + GF   +ET+GT E       W+ VSPK     K+           E+K          
Sbjct: 109 EAGFNCQIETSGTSEIQTSDNTWVTVSPKINMKAKLPVLASSLARANEIKHPVGTSKDIE 168

Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           Q++   +          +LQP+        T L I  C Q   WRLS+QTHK++ I
Sbjct: 169 QLDALIDGVTLKPDVTIALQPISQKT--RATELCIETCIQR-NWRLSIQTHKYLAI 221


>gi|160875275|ref|YP_001554591.1| radical activating enzyme [Shewanella baltica OS195]
 gi|160860797|gb|ABX49331.1| radical activating enzyme [Shewanella baltica OS195]
 gi|315267469|gb|ADT94322.1| Radical SAM domain protein [Shewanella baltica OS678]
          Length = 222

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 92/235 (39%), Gaps = 44/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y + E+F T+QGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDVLEVNK 51

Query: 57  --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                   + GT G     D  A  +   +       R+ V+TGGEP +     L + L+
Sbjct: 52  VTPEQVITVDGTIGRW--ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLRELTETLH 109

Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDL-------KIKGGQELKLVFPQVNVSP 160
            +GF   +ET+GT +     D W+ VSPK             +    E+K      N   
Sbjct: 110 SQGFATQIETSGTFDINCADDTWVTVSPKVNMKGGYKVLAQALNRANEIKHPIATENHIA 169

Query: 161 ENY-----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E       I    +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 170 ELDELLQGIDISTKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221


>gi|146292953|ref|YP_001183377.1| radical activating enzyme [Shewanella putrefaciens CN-32]
 gi|145564643|gb|ABP75578.1| radical activating enzyme [Shewanella putrefaciens CN-32]
          Length = 222

 Score =  227 bits (579), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 92/235 (39%), Gaps = 44/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y + E+F T+QGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDVLEANK 51

Query: 57  --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                   + GT G     +  AD +   +       R+ V+TGGEP +     L + L+
Sbjct: 52  VSPEQVITVDGTIGRW--AEHTADSLIAAFNAKGFTARHIVITGGEPCMYDLRELTETLH 109

Query: 109 KRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDL-------KIKGGQELKLVFPQVNVSP 160
            +GF   +ET+GT E       W+ VSPK             +    E+K      N   
Sbjct: 110 SQGFATQIETSGTFEVNCADNTWVTVSPKVNMKGGYPVLAQALNRANEIKHPIATENHID 169

Query: 161 E-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E       I    +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 170 ELDELLQDIDISAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLDI 221


>gi|262404009|ref|ZP_06080564.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. RC586]
 gi|262349041|gb|EEY98179.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. RC586]
          Length = 222

 Score =  227 bits (579), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 94/236 (39%), Gaps = 43/236 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57
           +Y I E+F T+QGEG   G  AVF R  GC +            C +CDT          
Sbjct: 1   MYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWDMLESE 49

Query: 58  ---------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                    +      +      D+++    T E + ++ V+TGGEP +     L Q   
Sbjct: 50  QTDFSHILLKAGDSPTWCQASAQDVVQRYQ-TQEYQAKHIVITGGEPCIYDLTELTQVFE 108

Query: 109 KRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
             G +  +ET+GT E       W+ VSPK     K+           E+K  V  + ++ 
Sbjct: 109 AIGCQCQIETSGTYEILATPNTWVTVSPKVAMKGKLPILDSSLQRANEIKHPVATENDIE 168

Query: 160 PENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             + +    +       +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 169 NLDALLLRAKVSSATVIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 221


>gi|153825305|ref|ZP_01977972.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|183179363|ref|ZP_02957574.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|149741133|gb|EDM55192.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|183012774|gb|EDT88074.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
          Length = 245

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 95/236 (40%), Gaps = 43/236 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56
           LY I E+F T+QGEG   G  AVF R  GC +            C +CDT          
Sbjct: 24  LYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSD 72

Query: 57  --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                   ++ +    +      ++++     G  + ++ V+TGGEP +     L QA  
Sbjct: 73  QTSFSQILLKTSDAPTWCQASAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFE 131

Query: 109 KRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
             G    +ET+GT E       W+ VSPK     K+           E+K  V  + ++ 
Sbjct: 132 AMGCRCQIETSGTYEVRATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 191

Query: 160 PENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             + +    +       +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 192 NLDELLARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244


>gi|330445748|ref|ZP_08309400.1| conserved protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489939|dbj|GAA03897.1| conserved protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 222

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 95/236 (40%), Gaps = 43/236 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y I E+F T+QGEG   G  A+F R   C +            C +CDT          
Sbjct: 1   MYKINEVFETIQGEGVFTGVPAIFVRLQVCPV-----------GCSWCDTKQTWT-AEPQ 48

Query: 63  GRYNVDQL--------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
              +++Q+              A+ + +  I  +   ++ V+TGGEP +    PL +AL 
Sbjct: 49  DLASLEQIMAKTEDSPLWTQLDANGVVQLLIDQKYTAKHVVITGGEPCIYDLRPLTEALE 108

Query: 109 KRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDLKIK-------GGQELKL------VFP 154
             GF   +ET+GT E       W+ VSPK     K+           E+K          
Sbjct: 109 AAGFNCQIETSGTSEIQASNNTWVTVSPKINMKAKLPVLASALERANEIKHPVGTSKDIE 168

Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           Q++   E          +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 169 QLDALLEGKNLKSDITIALQPISQK--PRATELCIETCIAR-NWRLSIQTHKYLAI 221


>gi|153000640|ref|YP_001366321.1| radical activating enzyme [Shewanella baltica OS185]
 gi|151365258|gb|ABS08258.1| conserved hypothetical protein [Shewanella baltica OS185]
          Length = 222

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 92/235 (39%), Gaps = 44/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y + E+F T+QGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDVLEANK 51

Query: 57  --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                   + GT G     D  A  +   +       R+ V+TGGEP +     L + L+
Sbjct: 52  VTPEQVISVDGTIGRW--ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLRELTETLH 109

Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDL-------KIKGGQELKLVFPQVNVSP 160
            +GF   +ET+GT +     D W+ VSPK             +    E+K      N   
Sbjct: 110 SQGFATQIETSGTFDINCADDTWVTVSPKVNMKGGYKVLAQALNRANEIKHPIATENHIA 169

Query: 161 E-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E       I    +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 170 ELDELLQDIDISTKAICLQPISQK--PRATELAMKVCITR-NWRLSIQTHKYLNI 221


>gi|120598962|ref|YP_963536.1| radical activating enzyme [Shewanella sp. W3-18-1]
 gi|120559055|gb|ABM24982.1| radical activating enzyme [Shewanella sp. W3-18-1]
 gi|319426518|gb|ADV54592.1| Radical SAM domain protein [Shewanella putrefaciens 200]
          Length = 222

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 92/235 (39%), Gaps = 44/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y + E+F T+QGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDVLEANK 51

Query: 57  --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                   + GT G     +  AD +   +       R+ V+TGGEP +     L + L+
Sbjct: 52  VSPEQVITVDGTIGRW--AEHTADSLIAAFNAEGFTARHIVITGGEPCMYDLRELTETLH 109

Query: 109 KRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDL-------KIKGGQELKLVFPQVNVSP 160
            +GF   +ET+GT E       W+ VSPK             +    E+K      N   
Sbjct: 110 SQGFATQIETSGTFEVNCADNTWVTVSPKVNMKGGYPVLAQALNRANEIKHPIATENHID 169

Query: 161 E-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E       I    +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 170 ELDELLQDIDISAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLDI 221


>gi|290476591|ref|YP_003469496.1| putative coenzyme PQQ synthesis protein with nitrogenase
           iron-molybdenum domain [Xenorhabdus bovienii SS-2004]
 gi|289175929|emb|CBJ82732.1| putative coenzyme PQQ synthesis protein with nitrogenase
           iron-molybdenum domain [Xenorhabdus bovienii SS-2004]
          Length = 223

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 91/240 (37%), Gaps = 49/240 (20%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
            +Y I EIF TLQGEG   G  +VF R  GC +            C +CDT         
Sbjct: 1   MIYPINEIFQTLQGEGVFTGVPSVFIRLQGCPV-----------GCSWCDTKHTWEKEAD 49

Query: 58  -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
                             G     Q+ +L   Q        R+ V+TGGEP L    PL 
Sbjct: 50  KQQPMENILVKSQDSDTWGAATARQIINLFIRQG----YTARHIVVTGGEPCLYNLRPLT 105

Query: 105 QALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ- 155
           + L   G++  +ET+GT         W+ VSPK             +    E+K    + 
Sbjct: 106 ETLESEGYQCQIETSGTHAIQCSEKTWVTVSPKVKMRGGYQVLPEAMNRANEIKHPVGRE 165

Query: 156 --VNVSPENYIGFDFE---RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             +    E     D +     +LQP+     EE T L I  C     WR S+QTHK++ I
Sbjct: 166 RDIEALDELLTMLDEKADPVIALQPISQK--EEATRLCIETCIAR-NWRFSMQTHKYLNI 222


>gi|157375186|ref|YP_001473786.1| radical activating enzyme [Shewanella sediminis HAW-EB3]
 gi|157317560|gb|ABV36658.1| radical activating enzyme [Shewanella sediminis HAW-EB3]
          Length = 222

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 101/238 (42%), Gaps = 45/238 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56
           MK Y + E+F T+QGEG   G  A+F R  GC +            C +CDT        
Sbjct: 1   MK-YPVNEVFETIQGEGFFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWDVIE 48

Query: 57  -----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
                      + GT G    +   A+ +   +       ++ V+TGGEP L   +PL +
Sbjct: 49  ENRVAPELVIQVDGTIGRWAELT--AEELISNFKAKGFTAKHVVITGGEPCLHDLIPLTE 106

Query: 106 ALNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQV 156
           +LN  G+   +ET+GT E       W+ VSPK      +           E+K  V  Q 
Sbjct: 107 SLNLSGYATQIETSGTFEVICSDKTWVTVSPKINMKAGLPILNQALIRANEIKHPVATQA 166

Query: 157 NVSPENY----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           ++   +     I  D +   LQP+        T LA+  C +   WRLS+QTHK++ I
Sbjct: 167 HIDDLDCLLKGISLDEKTICLQPISQK--SRATELAMRVCIER-NWRLSIQTHKYLEI 221


>gi|117620682|ref|YP_856352.1| radical activating enzyme [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117562089|gb|ABK39037.1| radical activating enzyme [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 237

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 95/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I EIF T+QGEG   G  A+F R  GC +            C +CDT    +      
Sbjct: 17  YPINEIFQTIQGEGVFTGLPAIFVRLQGCPV-----------GCPWCDTRHTWVVDPARE 65

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +     + + +Q+    ++       + R+ V+TGGEP L     L  A
Sbjct: 66  VGVQAVLDCSNESDGWSKMSTEQILASFQQLG----YQARHVVITGGEPCLYDLQDLSAA 121

Query: 107 LNKRGFEIAVETNGTIEPPQG-IDWICVSPKAGCDL-------KIKGGQELKLVFPQVNV 158
           L + G+++ +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 122 LIEAGYQVQIETSGTSEIQTHEQTWVTVSPKINMKGGLPVLVSALERANEIKHPVATERH 181

Query: 159 SPENYIGFDFER------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             E        R       +LQP+        T LA++ C     WRLS+QTHK++ I
Sbjct: 182 VEELDALLATARLRENVVIALQPISQK--PRATQLAMTTCIAR-NWRLSIQTHKYLDI 236


>gi|153212696|ref|ZP_01948353.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|124116346|gb|EAY35166.1| conserved hypothetical protein [Vibrio cholerae 1587]
          Length = 245

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 95/236 (40%), Gaps = 43/236 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56
           LY I E+F T+QGEG   G  AVF R  GC +            C +CDT          
Sbjct: 24  LYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSD 72

Query: 57  --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                   ++ +    +      ++++     G  + ++ V+TGGEP +     L QA  
Sbjct: 73  QTSFSQILLKTSDAPTWCQASAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFE 131

Query: 109 KRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
             G    +ET+GT E       W+ VSPK     K+           E+K  V  + ++ 
Sbjct: 132 AMGCRCQIETSGTYEVYATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 191

Query: 160 PENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             + +    +       +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 192 NLDELLARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244


>gi|217973439|ref|YP_002358190.1| radical activating enzyme [Shewanella baltica OS223]
 gi|217498574|gb|ACK46767.1| radical activating enzyme [Shewanella baltica OS223]
          Length = 222

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 92/235 (39%), Gaps = 44/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y + E+F T+QGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDVLEVNK 51

Query: 57  --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                   + GT G     D  A  +   +       R+ V+TGGEP +     L + L+
Sbjct: 52  VMPEQVISVDGTIGRW--ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLCELTETLH 109

Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDL-------KIKGGQELKLVFPQVNVSP 160
            +GF   +ET+GT +     D W+ VSPK             +    E+K      N   
Sbjct: 110 SQGFATQIETSGTFDINCADDTWVTVSPKVNMKGGYKVLTQALNRANEIKHPIATENHIA 169

Query: 161 ENY-----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E       I    +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 170 ELDELLQGIDISTKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221


>gi|269967852|ref|ZP_06181896.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269827557|gb|EEZ81847.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 226

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 95/235 (40%), Gaps = 41/235 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           LY + E+F T+QGEG   G  AVF R   C +            C +CDT          
Sbjct: 5   LYKLNEMFETIQGEGVFTGVPAVFVRLQECPV-----------GCSWCDTKQTWYADEND 53

Query: 63  GRYNVDQL-------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
            R   D L             A+ I EQ+       ++ V+TGGEP +    PL +A   
Sbjct: 54  QRQIGDILVKTEDSPTWCVASAENIVEQYQQQGFNAKHIVITGGEPCIYDLRPLTKAFED 113

Query: 110 RGFEIAVETNGTIEP-PQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSP 160
            G +  +ET+GT E       W+ VSPK     K+           E+K  V  Q ++  
Sbjct: 114 MGCQCQIETSGTSEVITSENTWVTVSPKVAMKGKLPVLNSALERANEIKHPVGTQKDIDH 173

Query: 161 ENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + +  +         +LQP+        T L I  C     WRLSVQTHK++ I
Sbjct: 174 LDDLLANANVAAETIIALQPISQK--PRATQLCIDTCIAR-NWRLSVQTHKYLSI 225


>gi|254228266|ref|ZP_04921695.1| Organic radical activating enzymes [Vibrio sp. Ex25]
 gi|262394169|ref|YP_003286023.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. Ex25]
 gi|151939339|gb|EDN58168.1| Organic radical activating enzymes [Vibrio sp. Ex25]
 gi|262337763|gb|ACY51558.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. Ex25]
          Length = 226

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 68/236 (28%), Positives = 95/236 (40%), Gaps = 41/236 (17%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
            LY + E+F T+QGEG   G  AVF R   C +            C +CDT         
Sbjct: 4   TLYKLNEMFETIQGEGVFTGVPAVFVRLQECPV-----------GCSWCDTKQTWYADEN 52

Query: 62  GGRYNVDQL-------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
             R   D L             A+ I EQ+       ++ V+TGGEP +    PL +A  
Sbjct: 53  DQRQIGDILVKTEDSPTWCVASAENIVEQYQLQGFNAKHIVITGGEPCIYDLRPLTKAFE 112

Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
             G +  +ET+GT E       W+ VSPK     K+           E+K  V  Q ++ 
Sbjct: 113 DMGCQCQIETSGTSEVITSENTWVTVSPKVAMKGKLPVLNSALERANEIKHPVGTQKDID 172

Query: 160 PENYIGFDF-----ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             + +  +         +LQP+        T L I  C     WRLSVQTHK++ I
Sbjct: 173 HLDELLANANVAVETVIALQPISQK--PRATQLCIETCIAR-NWRLSVQTHKYLSI 225


>gi|121587998|ref|ZP_01677750.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|153828785|ref|ZP_01981452.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|229515737|ref|ZP_04405196.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae TMA 21]
 gi|229521471|ref|ZP_04410890.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae TM
           11079-80]
 gi|229529559|ref|ZP_04418949.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae 12129(1)]
 gi|121547739|gb|EAX57830.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|148875738|gb|EDL73873.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|229333333|gb|EEN98819.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae 12129(1)]
 gi|229341569|gb|EEO06572.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae TM
           11079-80]
 gi|229347506|gb|EEO12466.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae TMA 21]
          Length = 245

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 95/236 (40%), Gaps = 43/236 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56
           LY I E+F T+QGEG   G  AVF R  GC +            C +CDT          
Sbjct: 24  LYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSD 72

Query: 57  --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                   ++ +    +      ++++     G  + ++ V+TGGEP +     L QA  
Sbjct: 73  QTSFSQILLKTSDAPTWCQASAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFE 131

Query: 109 KRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
             G    +ET+GT E       W+ VSPK     K+           E+K  V  + ++ 
Sbjct: 132 AMGCRCQIETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 191

Query: 160 PENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             + +    +       +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 192 NLDELLARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244


>gi|229523533|ref|ZP_04412938.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae bv.
           albensis VL426]
 gi|254225344|ref|ZP_04918956.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125622185|gb|EAZ50507.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|229337114|gb|EEO02131.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae bv.
           albensis VL426]
          Length = 245

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 95/236 (40%), Gaps = 43/236 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56
           LY I E+F T+QGEG   G  AVF R  GC +            C +CDT          
Sbjct: 24  LYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSD 72

Query: 57  --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                   ++ +    +      ++++     G  + ++ V+TGGEP +     L QA  
Sbjct: 73  QTSFSQILLKTSDAPTWCQATAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFE 131

Query: 109 KRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
             G    +ET+GT E       W+ VSPK     K+           E+K  V  + ++ 
Sbjct: 132 AMGCRCQIETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 191

Query: 160 PENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             + +    +       +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 192 NLDELLARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244


>gi|86141192|ref|ZP_01059738.1| hypothetical protein MED217_04222 [Leeuwenhoekiella blandensis
           MED217]
 gi|85831751|gb|EAQ50206.1| hypothetical protein MED217_04222 [Leeuwenhoekiella blandensis
           MED217]
          Length = 213

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 62/216 (28%), Positives = 98/216 (45%), Gaps = 27/216 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +L  + E F T+QGEG H G  A F R  GC++            C +CD      +   
Sbjct: 17  ELLPLMEEFYTIQGEGYHTGTPAYFIRVGGCDV-----------GCHWCDVK----ESWD 61

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
              +   + A ++       +K  +  V+TGGEPL+     L   L   G ++ +ET+G 
Sbjct: 62  AAIHPPTEAAAIVA----NAKKYSKTIVITGGEPLMWDMNHLTSMLKAEGLQVHIETSGA 117

Query: 122 IEPPQGIDWICVSPKAGCDLK---IKGGQELK-LVFPQVNVSPENYIGFDF---ERFSLQ 174
            E     DWIC+SPK     K    +   ELK +++ + + +             +  LQ
Sbjct: 118 YELSGHWDWICLSPKKRMLPKPRIYEEAHELKVIIYNKSDFAFAEEHAAKVNGNCQLFLQ 177

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P +    E+ T L + Y   NPKW++S+QTHK++ I
Sbjct: 178 P-EWSVREKMTPLIVDYVMANPKWKVSLQTHKYLNI 212


>gi|297578950|ref|ZP_06940878.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297536544|gb|EFH75377.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 245

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 95/236 (40%), Gaps = 43/236 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56
           LY I E+F T+QGEG   G  AVF R  GC +            C +CDT          
Sbjct: 24  LYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSD 72

Query: 57  --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                   ++ +    +      ++++     G  + ++ V+TGGEP +     L QA  
Sbjct: 73  QTSFSQILLKTSDAPTWCQATAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFE 131

Query: 109 KRGFEIAVETNGTIEPPQ-GIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
             G    +ET+GT E       W+ VSPK     K+           E+K  V  + ++ 
Sbjct: 132 AIGCRCQIETSGTYEVCATDNTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 191

Query: 160 PENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             + +    +       +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 192 NLDELLARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244


>gi|145298762|ref|YP_001141603.1| radical activating enzyme [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142851534|gb|ABO89855.1| radical activating enzyme [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 250

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 95/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I EIF T+QGEG   G  A+F R  GC +            C +CDT    I      
Sbjct: 30  YPINEIFQTIQGEGIFTGLPAIFVRLQGCPV-----------GCPWCDTRHTWIVDPARE 78

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +     + + DQ+    ++       + R+ V+TGGEP L     L   
Sbjct: 79  VGVQAVLDCSNESDSWSKMSTDQILASFQQLG----YQARHVVITGGEPCLYDLHELSTV 134

Query: 107 LNKRGFEIAVETNGTIEPPQ-GIDWICVSPKAGCDL-------KIKGGQELKL------V 152
           L   G+++ +ET+GT E       W+ VSPK G           ++   E+K        
Sbjct: 135 LLAAGYQVQIETSGTSEIKTHDSTWVTVSPKIGMKGGLPVLVSALERANEIKHPVATERH 194

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             +++              +LQP+        T LA++ C     WRLS+QTHK++ I
Sbjct: 195 IEELDALLATATLRPDVEIALQPISQK--PRATQLAMAVCIAR-NWRLSIQTHKYLDI 249


>gi|304413345|ref|ZP_07394818.1| radical SAM superfamily domain-containing hypothetical protein
           [Candidatus Regiella insecticola LSR1]
 gi|304284188|gb|EFL92581.1| radical SAM superfamily domain-containing hypothetical protein
           [Candidatus Regiella insecticola LSR1]
          Length = 265

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/236 (30%), Positives = 101/236 (42%), Gaps = 40/236 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y I EIF +LQGEG      A+F R  GC +            C +CDT           
Sbjct: 42  YPINEIFQSLQGEGYFTNVPAIFIRLQGCPV-----------ACSWCDTKHTWDIKKDKE 90

Query: 57  --IQGTKGGRYNVDQLADLIEEQWIT---GEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111
             IQG        D  ++  E+Q +     + + R+ V+TGGEP L    PL   L + G
Sbjct: 91  IDIQGITVKTVAKDTWSNANEQQLVAICKEKYQARHVVITGGEPCLYDLQPLTSLLEENG 150

Query: 112 FEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQVNVSPEN 162
           +   +ET+GT         W+ VSPK G        D  ++   E+K  V  + ++   N
Sbjct: 151 YRCQIETSGTHPVRCSTASWVTVSPKIGMKGGLKLLDQALQRADEIKHPVARERDIERLN 210

Query: 163 YI-----GFDFERFSLQPMD--GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            +            +LQP+       EE T L I  C ++  WRLSVQ HK++ IR
Sbjct: 211 NLLDKLNDGKKPVIALQPIRKTEKESEEATKLCIETCIKH-NWRLSVQMHKYLKIR 265


>gi|212635182|ref|YP_002311707.1| Radical activating enzyme [Shewanella piezotolerans WP3]
 gi|212556666|gb|ACJ29120.1| Radical activating enzyme [Shewanella piezotolerans WP3]
          Length = 222

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 63/235 (26%), Positives = 95/235 (40%), Gaps = 44/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y + E+F T+QGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPVNEVFETIQGEGYFTGVPAIFVRLQGCPV-----------GCAWCDTKHTWDVIEENR 51

Query: 57  --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                   + GT G R++      L+      G    ++ V+TGGEP +         L+
Sbjct: 52  VAPELVIQVDGTIG-RWSELSSEQLVAAFKSKG-FTAKHIVITGGEPCMYDLTEFTHYLH 109

Query: 109 KRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDL-------KIKGGQELKLVFPQVNVSP 160
           + G++  +ET+GT E       W+ VSPK             ++   E+K      N   
Sbjct: 110 QMGYQTQIETSGTFEVACDSGTWVTVSPKINMKGGYKVLAQALERANEIKHPIATRNHID 169

Query: 161 E-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E       I  + +   LQP+        T LA+  C +   WRLS+QTHK++ I
Sbjct: 170 ELDELLADIDINDKTVCLQPISQK--ARATELAMKTCIER-NWRLSIQTHKYLDI 221


>gi|330830002|ref|YP_004392954.1| Radical activating enzyme [Aeromonas veronii B565]
 gi|328805138|gb|AEB50337.1| Radical activating enzyme [Aeromonas veronii B565]
          Length = 230

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 95/235 (40%), Gaps = 43/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I EIF T+QGEG   G  A+F R  GC +            C +CDT    +      
Sbjct: 10  YPINEIFQTIQGEGIFTGLPAIFVRLQGCPV-----------GCPWCDTRHTWVVDPARE 58

Query: 58  --------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
                   +  +   ++    A +I+     G  + R+ V+TGGEP L     L  AL  
Sbjct: 59  VGKAAVLDRSNESDCWSQLSTAQIIKSFGELG-YQARHVVITGGEPCLYDLHELSSALLA 117

Query: 110 RGFEIAVETNGTIEPPQG-IDWICVSPKAGCDL-------KIKGGQELKLVFPQVNVSPE 161
            G+++ +ET+GT E       W+ VSPK G           ++   E+K      +   E
Sbjct: 118 AGYQVQIETSGTSEIKTHEQTWVTVSPKIGMKGGLPVLVSALERANEIKHPVATEHHIEE 177

Query: 162 NYIGFDFER------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                           +LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 178 LDTLLATATLRPDVVIALQPISQK--PRATQLAMDTCIAR-NWRLSIQTHKYLDI 229


>gi|121728537|ref|ZP_01681560.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147675014|ref|YP_001216924.1| hypothetical protein VC0395_A0978 [Vibrio cholerae O395]
 gi|254286183|ref|ZP_04961143.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|121629201|gb|EAX61641.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|146316897|gb|ABQ21436.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|150423852|gb|EDN15793.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|227013282|gb|ACP09492.1| conserved hypothetical protein [Vibrio cholerae O395]
          Length = 245

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 63/235 (26%), Positives = 92/235 (39%), Gaps = 41/235 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ---- 58
           LY I E+F T+QGEG   G  AVF R  GC +            C +CDT          
Sbjct: 24  LYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSD 72

Query: 59  ---------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
                     T          A  + +++     + ++ V+TGGEP +     L QA   
Sbjct: 73  QTSFSQILLKTNDAPTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCIYDLTELTQAFEA 132

Query: 110 RGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSP 160
            G    +ET+GT E       W+ VSPK     K+           E+K  V  + ++  
Sbjct: 133 MGCRCQIETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDN 192

Query: 161 ENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + +    +       +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 193 LDELLARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244


>gi|262275962|ref|ZP_06053771.1| queuosine Biosynthesis QueE Radical SAM [Grimontia hollisae CIP
           101886]
 gi|262219770|gb|EEY71086.1| queuosine Biosynthesis QueE Radical SAM [Grimontia hollisae CIP
           101886]
          Length = 220

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 96/238 (40%), Gaps = 49/238 (20%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56
           +Y++ EIF T+QGEG   G  +VF R  GC +            C +CDT          
Sbjct: 1   MYNVNEIFETIQGEGTFTGIPSVFIRLQGCPV-----------GCPWCDTRQTWDTLPLD 49

Query: 57  -----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
                       +     R + + +   ++          ++ V+TGGEP +   +PL  
Sbjct: 50  QRDFGTIIAKNDESPLWARVSAEDILSHLQS-----RYTAKHIVITGGEPCMFDLMPLTS 104

Query: 106 ALNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQV 156
            L+  G+   +ET+GT         W+ VSPK     K+           E+K  V  + 
Sbjct: 105 LLDAHGYRCQIETSGTYVVYATENTWVTVSPKINMRGKLPILKEALDRANEIKHPVGTES 164

Query: 157 NVSPEN----YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           ++   +    ++    +  +LQP+        T L I  C     WRLSVQTHK++ I
Sbjct: 165 DIEKLDELLKHVDLKGKEVALQPISQK--ARATALCIETCIAR-NWRLSVQTHKYLNI 219


>gi|282859352|ref|ZP_06268460.1| radical SAM domain protein [Prevotella bivia JCVIHMP010]
 gi|282587837|gb|EFB93034.1| radical SAM domain protein [Prevotella bivia JCVIHMP010]
          Length = 194

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 80/214 (37%), Positives = 106/214 (49%), Gaps = 28/214 (13%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            I EIF ++QGEG +AG  A+F RF+ CNL            C FCDTDFV        R
Sbjct: 2   KINEIFYSIQGEGFYAGTPAIFVRFAQCNL-----------NCAFCDTDFV--------R 42

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +      +++ E    G     + +LTGGEP LQV   L   L++ G  I +ETNGT   
Sbjct: 43  FTEMTEEEIVAEVCRIG-NPATHVILTGGEPSLQVTASLCDKLHEAGKVIHIETNGTHAV 101

Query: 125 PQGIDWICVSPK----AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
            +GID+I  SPK       +L ++   ELK+VF   N     Y     + + LQP D   
Sbjct: 102 AEGIDFITCSPKLEYCKHAELCVQRIDELKVVFTGKN-DMALYENIQAQHYFLQPCDVGN 160

Query: 181 LEENTNLA---ISYCFQNPKWRLSVQTHKFIGIR 211
             EN  +    + YC  NPKW +SVQ HK + IR
Sbjct: 161 DAENGRIIAATVGYCKANPKWNISVQIHKVLAIR 194


>gi|323491404|ref|ZP_08096589.1| organic radical activating enzyme [Vibrio brasiliensis LMG 20546]
 gi|323314530|gb|EGA67609.1| organic radical activating enzyme [Vibrio brasiliensis LMG 20546]
          Length = 222

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 97/237 (40%), Gaps = 45/237 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y I E+F T+QGEG   G  +VF R   C +            C +CDT       T  
Sbjct: 1   MYKINEMFQTIQGEGVFTGVPSVFVRLQECPV-----------GCAWCDTKQTW-DATPQ 48

Query: 63  GRYNVDQLA---------------DLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
              ++D++                D++ E    G    R+ V+TGGEP +    PL  A 
Sbjct: 49  DECSLDEILAKKEDSPAWCSVSAQDIVNEYQKQG-YTARHIVITGGEPCIYDLRPLTAAF 107

Query: 108 NKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNV 158
              G +  +ET+GT +       W+ VSPK     K+           E+K  V  Q ++
Sbjct: 108 EAIGCQCQIETSGTYQVDASENTWVTVSPKVAMKGKLPVIDSALLRANEIKHPVATQKDI 167

Query: 159 SPENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              + +    +       +LQP+        T L I  C +   WRLS+QTHK++ I
Sbjct: 168 DQLDELLTRAQVPQSTTIALQPISQK--PRATQLCIDTCVER-NWRLSIQTHKYLSI 221


>gi|261252909|ref|ZP_05945482.1| queuosine Biosynthesis QueE Radical SAM [Vibrio orientalis CIP
           102891]
 gi|260936300|gb|EEX92289.1| queuosine Biosynthesis QueE Radical SAM [Vibrio orientalis CIP
           102891]
          Length = 222

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 94/236 (39%), Gaps = 43/236 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y I E+F T+QGEG   G  +VF R   C +            C +CDT          
Sbjct: 1   MYKINEMFETIQGEGVFTGVPSVFVRLQECPV-----------GCAWCDTKQTWDATPTD 49

Query: 63  GR--------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
            R              +      D++ E    G    ++ V+TGGEP +    PL QA  
Sbjct: 50  ERPLNEILAKTEDSPTWCGVSAEDIVNEYKKQG-YTAKHIVITGGEPCIYDLRPLTQAFE 108

Query: 109 KRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
           + G +  +ET+GT E       W+ VSPK     K+           E+K  V  Q ++ 
Sbjct: 109 ENGCQCQIETSGTFEVKATTKTWVTVSPKVAMKGKLPVIDSALLRANEIKHPVATQKDID 168

Query: 160 PENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             + +    +       +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 169 QLDELLERAKVSEQTTVALQPISQK--PRATQLCIDVCVAR-NWRLSIQTHKYLSI 221


>gi|90414517|ref|ZP_01222492.1| putative organic radical activating enzyme [Photobacterium
           profundum 3TCK]
 gi|90324425|gb|EAS40987.1| putative organic radical activating enzyme [Photobacterium
           profundum 3TCK]
          Length = 222

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 93/239 (38%), Gaps = 49/239 (20%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57
           +Y I E+F T+QGEG   G  A+F R   C +            C +CDT          
Sbjct: 1   MYKINEVFETIQGEGTFTGVPAIFVRLQVCPV-----------GCSWCDTKQTWDAEPTD 49

Query: 58  ------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
                               +   +  L+++Q        R+ V+TGGEP +   +PL  
Sbjct: 50  YASLNDIMAKKGDSPLWTNIDAQGIVALLQDQG----YTARHVVITGGEPCIYDLIPLTA 105

Query: 106 ALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKL------ 151
           AL   GF   +ET+GT E     D W+ VSPK     K+           E+K       
Sbjct: 106 ALETAGFNCQIETSGTSEILATEDTWVTVSPKINMKAKLPVLASALSRADEIKHPVGTSK 165

Query: 152 VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              Q++              +LQP+        T+L I  C +   WRLS+QTHK++ I
Sbjct: 166 DIEQLDTLINGVTLKQNVTIALQPISQK--PRATDLCIETCIKR-NWRLSIQTHKYLAI 221


>gi|269964054|ref|ZP_06178359.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831195|gb|EEZ85349.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 226

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 92/237 (38%), Gaps = 43/237 (18%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
            LY + E+F T+QGEG   G  AVF R   C +            C +CDT        +
Sbjct: 4   TLYKLNEMFETIQGEGVFTGVPAVFVRLQVCPV-----------GCSWCDTKQTWYAEEE 52

Query: 62  GGR--------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
           G R              +      D++ E    G    ++ V+TGGEP +     L  A 
Sbjct: 53  GQRQIGDILVKTEDSPTWCFASAEDIVAEYKKQGFN-AKHIVITGGEPCIYDLRALTAAF 111

Query: 108 NKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL------VF 153
            + G +  +ET+GT E       W+ VSPK     K+           E+K         
Sbjct: 112 EEMGCQCQIETSGTSEVVTSESTWVTVSPKVAMKGKLPVLKSALERANEIKHPVGTQKDI 171

Query: 154 PQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            Q++    +    +    +LQP+        T L I  C     WRLSVQTHK++ I
Sbjct: 172 DQLDSLLASADIAEKTVIALQPISQK--PRATQLCIDTCVAR-NWRLSVQTHKYLSI 225


>gi|28898413|ref|NP_798018.1| hypothetical protein VP1639 [Vibrio parahaemolyticus RIMD 2210633]
 gi|28806630|dbj|BAC59902.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 222

 Score =  224 bits (572), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 96/236 (40%), Gaps = 43/236 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y + E+F T+QGEG   G  AVF R   C +            C +CDT        K 
Sbjct: 1   MYKLNEMFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWDAEEKD 49

Query: 63  GR--------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
            R              +      D++E+    G    ++ V+TGGEP +    PL +A  
Sbjct: 50  QRPIGDILVKTEDSPTWCTASAEDIVEQYKQQGFN-AKHIVITGGEPCIYDLRPLSKAFE 108

Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
             G +  +ET+GT E       W+ VSPK     K+           E+K  V  Q ++ 
Sbjct: 109 DMGCQCQIETSGTSEVVTSEKTWVTVSPKVAMKGKLPVLRSALERANEIKHPVGTQKDID 168

Query: 160 PENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             + +  + +       +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 169 HLDELLANADIKVETVIALQPISQK--PRATQLCIETCIAR-NWRLSIQTHKYLSI 221


>gi|238791241|ref|ZP_04634880.1| hypothetical protein yinte0001_29930 [Yersinia intermedia ATCC
           29909]
 gi|238729374|gb|EEQ20889.1| hypothetical protein yinte0001_29930 [Yersinia intermedia ATCC
           29909]
          Length = 216

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 89/233 (38%), Gaps = 49/233 (21%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----------- 57
           +F TLQGEG   G  A+F R  GC +            C +CDT                
Sbjct: 1   MFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKEADREVDMQR 49

Query: 58  ------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111
                 +    G  +  QL D+  +Q        R+ V+TGGEP +    PL   L + G
Sbjct: 50  IMVKTAESDAWGEASAQQLLDIFSQQG----YTARHVVITGGEPAIYDLFPLTSLLEQAG 105

Query: 112 FEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL------VFPQVN 157
           +   +ET+GT +       W+ VSPK             ++   E+K           + 
Sbjct: 106 YSCQIETSGTHDVRCSATTWVTVSPKVNMRGGLKVLPQALQRADEIKHPVGRMRDIEALE 165

Query: 158 VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           V             +LQP+     ++ T L I  C     WRLS+QTHK++ I
Sbjct: 166 VLLATLDDDKKRIIALQPISQK--DDATKLCIETCIAK-NWRLSMQTHKYLNI 215


>gi|312884429|ref|ZP_07744133.1| hypothetical protein VIBC2010_14679 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367741|gb|EFP95289.1| hypothetical protein VIBC2010_14679 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 238

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 66/237 (27%), Positives = 96/237 (40%), Gaps = 43/237 (18%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           KLY + E+F T+QGEG   G  +VF R   C +            C +CDT        K
Sbjct: 16  KLYKVNEMFETIQGEGVFTGVPSVFVRLQECPV-----------GCAWCDTKQTWDASPK 64

Query: 62  GGR--------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
             R              +      D++ E    G    R+ V+TGGEP +   +PL +A 
Sbjct: 65  DERTLKEILSKTTDSPTWCRASANDVVSEYLRQG-YTARHIVITGGEPCIYDLIPLTEAF 123

Query: 108 NKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNV 158
                +  +ET+GT E       W+ VSPK     K+           ELK  V  Q ++
Sbjct: 124 EAINCKCQIETSGTSEVITSPNTWVTVSPKIAMKGKLPVLPSALIRANELKHPVATQKDI 183

Query: 159 SPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              + +       +    +LQP+        T L I  C +   WRLS+QTHK++ I
Sbjct: 184 DRLDDLLSGVSLSEDTEIALQPISQK--PRATELCIEVCIKR-NWRLSIQTHKYLSI 237


>gi|54309500|ref|YP_130520.1| putative organic radical activating enzyme [Photobacterium
           profundum SS9]
 gi|46913936|emb|CAG20718.1| putative organic radical activating enzymes [Photobacterium
           profundum SS9]
          Length = 222

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 94/239 (39%), Gaps = 49/239 (20%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57
           +Y I E+F T+QGEG   G  A+F R   C +            C +CDT          
Sbjct: 1   MYKINEVFETIQGEGTFTGVPAIFVRLQVCPV-----------GCSWCDTKQTWDAEPTD 49

Query: 58  ------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
                               +   +  L+++Q        R+ V+TGGEP +   VPL  
Sbjct: 50  YASLNDIMAKKGDSPLWTNIDAQGIVTLLQDQG----YTARHVVITGGEPCIYDLVPLTA 105

Query: 106 ALNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL------ 151
           AL   GF   +ET+GT E       W+ VSPK     K+           E+K       
Sbjct: 106 ALETAGFNCQIETSGTSEILATENTWVTVSPKINMKAKLPVLASALSRADEIKHPVGTSK 165

Query: 152 VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              Q++   +  I       +LQP+        T+L I  C +   WRLS+QTHK++ I
Sbjct: 166 DIKQLDALIDGVILKQNVTIALQPISQK--PRATDLCIETCIKR-NWRLSIQTHKYLAI 221


>gi|59713678|ref|YP_206453.1| hypothetical protein VF_A0495 [Vibrio fischeri ES114]
 gi|59481926|gb|AAW87565.1| conserved protein [Vibrio fischeri ES114]
          Length = 226

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 94/240 (39%), Gaps = 49/240 (20%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
            L+ I E+F T+QGEG   G  ++F R  GC +            C +CDT         
Sbjct: 4   PLFKINELFETIQGEGTFTGVPSIFLRLQGCPV-----------GCSWCDTKQTWDVELS 52

Query: 58  -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
                                +  Q+ +++E Q        ++ V+TGGEP +     L 
Sbjct: 53  DKTDLQTILAKTEDTPSWTELSSTQIIEMLENQG----YTAKHMVITGGEPCMYDLTSLT 108

Query: 105 QALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKL----- 151
           Q L + G+   +ET+GT       D W+ VSPK     K+           E+K      
Sbjct: 109 QELEQHGYRCQIETSGTYPILASDDTWVTVSPKINMKGKLPVLPVALSRANEIKHPVGTT 168

Query: 152 -VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               Q++   E     +    +LQP+        T L I  C +   WRLS+QTHK++ I
Sbjct: 169 KDIEQLDALLEGVELLEDVTIALQPISQK--PRATELCIETCIKR-NWRLSIQTHKYLAI 225


>gi|197286098|ref|YP_002151970.1| hypothetical protein PMI2252 [Proteus mirabilis HI4320]
 gi|194683585|emb|CAR44467.1| conserved hypothetical protein [Proteus mirabilis HI4320]
          Length = 223

 Score =  224 bits (571), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 63/235 (26%), Positives = 97/235 (41%), Gaps = 43/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT--- 60
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT     +     
Sbjct: 3   YPINEVFQTLQGEGVFTGVPALFVRLQGCPV-----------GCSWCDTKHTWEKEESKK 51

Query: 61  -----------KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
                      +   + +  + D++   +       ++ V+TGGEP L    PL + L K
Sbjct: 52  VPLGDIPIKTQESDTWGIATVEDIL-SLFRQQRYSAKHVVITGGEPCLYDLRPLTEGLEK 110

Query: 110 RGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQVNVSP 160
            GF+  +ET+GT +       W+ +SPK G           I    E+K  V  + ++  
Sbjct: 111 AGFDCQIETSGTHDILCSEATWVTLSPKVGMRGGLSVLSSAINRANEIKHPVAREKDIEA 170

Query: 161 ENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + +            +LQP+     E  T L I  C +   WR S+QTHK++ I
Sbjct: 171 LDDLLRLRTQQPMAIVALQPISCK--ESATALCIKTCIER-NWRFSMQTHKYLNI 222


>gi|221135470|ref|ZP_03561773.1| organic radical activating protein [Glaciecola sp. HTCC2999]
          Length = 227

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 97/238 (40%), Gaps = 47/238 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y I EIF ++QGEG + G  ++F R  GC +            C +CDT           
Sbjct: 7   YPINEIFESIQGEGSYTGVPSIFIRLQGCPV-----------GCPWCDTQHTWKVDTDDQ 55

Query: 57  -------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
                   +      + +  +  L+ E  I G    ++ V+TGGEP +   VPL + L  
Sbjct: 56  IPVVQLREKSADAPTHALMNVTALLHEYEIRG-YLAKHVVITGGEPAMHDLVPLTEVLLS 114

Query: 110 RGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKLVFPQVNVSPE 161
           +GF + +ET+GT       D ++ VSPK     K            E+K          E
Sbjct: 115 KGFSVQIETSGTFALRCADDVYVTVSPKIDMPGKYPILPEVMARANEIKHAVAMQKHVDE 174

Query: 162 NYIGFDFER--------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             +    ER          LQP+        T LA+  C +   WRLS+QTHKFIGI 
Sbjct: 175 --LKLLLERAPIQTNTLIYLQPISQ--QARATQLAVETCIK-ENWRLSLQTHKFIGIE 227


>gi|127512989|ref|YP_001094186.1| radical SAM domain-containing protein [Shewanella loihica PV-4]
 gi|126638284|gb|ABO23927.1| Radical SAM domain protein [Shewanella loihica PV-4]
          Length = 222

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 97/238 (40%), Gaps = 45/238 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56
           MK Y + E+F T+QGEG + G  A+F R  GC +            C +CDT        
Sbjct: 1   MK-YPVNEVFETIQGEGVYTGVPAIFVRLQGCPV-----------GCSWCDTKHTWETLA 48

Query: 57  -----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
                      + G  G    +D  A  +   +       ++ V+TGGEP +   + L Q
Sbjct: 49  ENRVSSEQVIQVDGAIGRWAELD--ARELLMHFKVQGFSAKHVVITGGEPCIYDLIALTQ 106

Query: 106 ALNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQVN 157
           A    G +  +ET+GT +       W+ VSPK          +  ++   E+K    + +
Sbjct: 107 AFADAGMQCQIETSGTFDVLVDPRAWVTVSPKINMKGGYKVLEQALERADEIKHPVAKAS 166

Query: 158 VSPENY-----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              E       I    +   LQP+        T LA+  C +   WRLS+QTHK++ I
Sbjct: 167 HIEELDELLKGIDTLGKTICLQPISQK--PRATELAMKVCIER-NWRLSIQTHKYLNI 221


>gi|260876575|ref|ZP_05888930.1| organic radical activating enzyme [Vibrio parahaemolyticus AN-5034]
 gi|260895066|ref|ZP_05903562.1| organic radical activating enzyme [Vibrio parahaemolyticus
           Peru-466]
 gi|308125822|ref|ZP_05777715.2| organic radical activating enzyme [Vibrio parahaemolyticus K5030]
 gi|308126346|ref|ZP_05909319.2| organic radical activating enzyme [Vibrio parahaemolyticus AQ4037]
 gi|308085913|gb|EFO35608.1| organic radical activating enzyme [Vibrio parahaemolyticus
           Peru-466]
 gi|308093608|gb|EFO43303.1| organic radical activating enzyme [Vibrio parahaemolyticus AN-5034]
 gi|308110779|gb|EFO48319.1| organic radical activating enzyme [Vibrio parahaemolyticus AQ4037]
 gi|308111580|gb|EFO49120.1| organic radical activating enzyme [Vibrio parahaemolyticus K5030]
          Length = 226

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 96/236 (40%), Gaps = 43/236 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           LY + E+F T+QGEG   G  AVF R   C +            C +CDT        K 
Sbjct: 5   LYKLNEMFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWDAEEKD 53

Query: 63  GR--------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
            R              +      D++E+    G    ++ V+TGGEP +    PL +A  
Sbjct: 54  QRPIGDILVKTEDSPTWCTASAEDIVEQYKQQGFN-AKHIVITGGEPCIYDLRPLSKAFE 112

Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
             G +  +ET+GT E       W+ VSPK     K+           E+K  V  Q ++ 
Sbjct: 113 DMGCQCQIETSGTSEVVTSEKTWVTVSPKVAMKGKLPVLRSALERANEIKHPVGTQKDID 172

Query: 160 PENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             + +  + +       +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 173 HLDELLANADIKVETVIALQPISQK--PRATQLCIETCIAR-NWRLSIQTHKYLSI 225


>gi|153836184|ref|ZP_01988851.1| organic radical activating enzyme [Vibrio parahaemolyticus AQ3810]
 gi|149750459|gb|EDM61204.1| organic radical activating enzyme [Vibrio parahaemolyticus AQ3810]
          Length = 226

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 93/236 (39%), Gaps = 43/236 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           LY + E+F T+QGEG   G  AVF R   C +            C +CDT        K 
Sbjct: 5   LYKLNEMFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWDAEEKD 53

Query: 63  GR--------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
            R              +      D++E+    G    ++ V+TGGEP +    PL +A  
Sbjct: 54  QRPIGDILVKTEDSPTWCTASAEDIVEQYKQQGFN-AKHIVITGGEPCIYDLRPLSKAFE 112

Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKLVF---PQVN 157
             G +  +ET+GT E       W+ VSPK     K+           E+K        ++
Sbjct: 113 DMGCQCQIETSGTSEVVTSEKTWVTVSPKVAMKGKLPVLRSALERANEIKHPVGTQKDID 172

Query: 158 VSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              E     D +     +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 173 HLDELLANADIKTETVIALQPISQK--PRATQLCIETCIAR-NWRLSIQTHKYLSI 225


>gi|163752023|ref|ZP_02159232.1| radical activating enzyme [Shewanella benthica KT99]
 gi|161328075|gb|EDP99244.1| radical activating enzyme [Shewanella benthica KT99]
          Length = 222

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 99/237 (41%), Gaps = 43/237 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK Y + E+F T+QGEG   G  A+F R  GC +            C +CDT        
Sbjct: 1   MK-YPVNEVFETIQGEGVFTGVAAIFVRLQGCPV-----------GCSWCDTKHTWDVLE 48

Query: 61  KG--------------GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
           K               GR++     +LI   +I      ++ V+TGGEP +     L   
Sbjct: 49  KNRVAPELVIQVDGVIGRWSELTAEELIN-FFIRKGFNAKHVVITGGEPCIHDLTELTSQ 107

Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCD-------LKIKGGQELKLVFP---Q 155
           LN++G+   +ET+GT E       W+ VSPK             ++   E+K        
Sbjct: 108 LNRQGYGTQIETSGTFEVTCSDKTWVTVSPKVNMKAGMTVLTQALERADEIKHPVARSKH 167

Query: 156 VNVSPENYIGFDFE--RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           ++   E   G + E     LQP+        T LA+  C +   WRLS+QTHK++ I
Sbjct: 168 IDDLDELLEGIEVEGKIICLQPISQK--PRATELAMKICIER-NWRLSIQTHKYLNI 221


>gi|238897449|ref|YP_002923126.1| hypothetical protein HDEF_0210 [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465204|gb|ACQ66978.1| conserved hypothetical protein, Radical_SAM domain protein
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 223

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 66/237 (27%), Positives = 91/237 (38%), Gaps = 41/237 (17%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
            LY I EIF TLQGEG   G  A+F R  GC +            C +CDT     +  +
Sbjct: 1   MLYPINEIFQTLQGEGHFMGTPAIFIRLQGCPV-----------GCSWCDTKHTWEKKNE 49

Query: 62  -------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                           +        +         +  + V+TGGEP L    PL Q L 
Sbjct: 50  QQVDLFSILQKKTANDFWSHSGEQNLLAVIRAQGYQASHVVITGGEPCLYDLTPLTQLLE 109

Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDL-------KIKGGQELKLVFPQ----- 155
           + G+   +ET+GT         W+ VSPK             ++   ELK V  +     
Sbjct: 110 QEGYFCQIETSGTHLVHCTPSCWVTVSPKINMRGGFKIQHQALERADELKHVVARKSDIE 169

Query: 156 -VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            ++    N         SLQP+     +  T L I  C +   WRLSVQ HK++GI 
Sbjct: 170 TLDALIGNLKDRKKRIISLQPVSQK--KSATQLCIDTCIER-NWRLSVQMHKYLGIE 223


>gi|90408082|ref|ZP_01216253.1| putative organic radical activating enzyme [Psychromonas sp. CNPT3]
 gi|90310839|gb|EAS38953.1| putative organic radical activating enzyme [Psychromonas sp. CNPT3]
          Length = 225

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 91/234 (38%), Gaps = 41/234 (17%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y + EIF T+QGEG H G  A+F R  GC++            C +CDT           
Sbjct: 5   YKVNEIFQTIQGEGVHTGCAAIFIRLQGCDV-----------GCAWCDTKHTWSANENDK 53

Query: 64  ---------RYNVDQLADLIEEQWITG----EKEGRYCVLTGGEPLLQVDVPLIQALNKR 110
                      +  Q AD+  E  +      E   +  ++TGGEP +    PL   L+  
Sbjct: 54  VPLNLVTDLSNSSAQWADVSAEHILAEIKNLEYTAKLVIITGGEPCIFDLRPLTALLHAH 113

Query: 111 GFEIAVETNGTIEPP-QGIDWICVSPKAGCDLK-------IKGGQELKL------VFPQV 156
           GF+  +ET+GT         W+ VSPK     K       ++   E+K          Q+
Sbjct: 114 GFQTQIETSGTYPILVDAKSWVTVSPKVNMRAKKEVLLSALQRADEIKHPVGTQKDIEQL 173

Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +           +   LQP+        T L +  C     WRLSVQ HK++ I
Sbjct: 174 DALLARLGDTHNKTICLQPISQK--ANATALCMRTCIAR-NWRLSVQLHKYLDI 224


>gi|227356608|ref|ZP_03840995.1| radical SAM domain protein [Proteus mirabilis ATCC 29906]
 gi|227163364|gb|EEI48291.1| radical SAM domain protein [Proteus mirabilis ATCC 29906]
          Length = 250

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 63/235 (26%), Positives = 97/235 (41%), Gaps = 43/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT--- 60
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT     +     
Sbjct: 30  YPINEVFQTLQGEGVFTGVPALFVRLQGCPV-----------GCSWCDTKHTWEKEESKK 78

Query: 61  -----------KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
                      +   + +  + D++   +       ++ V+TGGEP L    PL + L K
Sbjct: 79  VPLGDIPIKTQESDTWGIATVEDIL-SLFRQQRYSAKHVVITGGEPCLYDLRPLTEGLEK 137

Query: 110 RGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQVNVSP 160
            GF+  +ET+GT +       W+ +SPK G           I    E+K  V  + ++  
Sbjct: 138 AGFDCQIETSGTHDILCSEATWVTLSPKVGMRGGLNVLSSAINRANEIKHPVAREKDIEA 197

Query: 161 ENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + +            +LQP+     E  T L I  C +   WR S+QTHK++ I
Sbjct: 198 LDDLLRLRTQQPMAIVALQPISCK--ESATALCIKTCIER-NWRFSMQTHKYLNI 249


>gi|119469471|ref|ZP_01612375.1| queC protein [Alteromonadales bacterium TW-7]
 gi|119447006|gb|EAW28276.1| queC protein [Alteromonadales bacterium TW-7]
          Length = 221

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 93/234 (39%), Gaps = 40/234 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57
           +Y I E+F T+QGE    G  ++F R  GC +            C +CDT          
Sbjct: 1   MYKINEVFETIQGEASFTGTPSIFLRLQGCPV-----------GCSWCDTKQTWDVDNVY 49

Query: 58  ----QGTKGGRYNVDQLADL----IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
                 T   + + D  AD     + E + +     ++ V+TGGEP +     + + L+ 
Sbjct: 50  KVSLDETVEKKADSDHWADASAEQVLELFKSRGYTAKHVVITGGEPCMYDLNQVCKLLHD 109

Query: 110 RGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQVNVSPE 161
            GF   +ET+GT E       W+ VSPK             +K   E+K          E
Sbjct: 110 NGFTTQIETSGTFEILAPEQTWVTVSPKINMRGGYEVLTSAMKRANEIKHPVAMQKHVEE 169

Query: 162 NYIGF-----DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               F     + +   LQP+        T LAI  C     WRLS+Q HK++GI
Sbjct: 170 LEELFAKTGVNPKLVYLQPISQKVS--ATKLAIDTCIAK-NWRLSIQVHKYLGI 220


>gi|268591373|ref|ZP_06125594.1| radical SAM domain protein [Providencia rettgeri DSM 1131]
 gi|291313351|gb|EFE53804.1| radical SAM domain protein [Providencia rettgeri DSM 1131]
          Length = 223

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 93/239 (38%), Gaps = 44/239 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK Y I EIF T+QGEG   G  AVF R  GC +            C +CDT     +  
Sbjct: 1   MK-YPINEIFQTIQGEGVFTGVPAVFIRLQGCPV-----------GCSWCDTKQTWEKEQ 48

Query: 61  KGG---------RYNVDQLA----DLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
                         + D  A    + + +         ++ V+TGGEP +    PL   L
Sbjct: 49  DKESTLGDIALKTIDSDAWAMADGEALVQLMKEKHFSAQHIVITGGEPCIYDLQPLTGIL 108

Query: 108 NKRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDL-------KIKGGQELKLVFPQVNVS 159
            + G++  +ET+GT         W+ VSPK G           +    E+K    +    
Sbjct: 109 EQHGYQCQIETSGTYPIQCTDNTWVTVSPKVGMKGGLQVISQAVNRANEIKHPVAREK-D 167

Query: 160 PENYIGFDFER-------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            E        R        +LQP+        T L I  C Q   WRLS+QTHK++ I+
Sbjct: 168 IEALEKILALRTVETPPVVALQPISQK--AAATKLCIETCIQR-NWRLSIQTHKYLDIQ 223


>gi|328468975|gb|EGF39935.1| hypothetical protein VP10329_15155 [Vibrio parahaemolyticus 10329]
          Length = 226

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 93/236 (39%), Gaps = 43/236 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           LY + E+F T+QGEG   G  AVF R   C +            C +CDT        K 
Sbjct: 5   LYKLNEMFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWDAEEKD 53

Query: 63  GR--------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
            R              +      D++E+    G    ++ V+TGGEP +    PL +A  
Sbjct: 54  QRPIGDILVKTEDSPTWCTASAEDIVEQYKQQGFN-AKHIVITGGEPCIYDLRPLSKAFE 112

Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKLVF---PQVN 157
             G +  +ET+GT E       W+ VSPK     K+           E+K        ++
Sbjct: 113 DMGCQCQIETSGTSEVVTSEKTWVTVSPKVAMKGKLPVLKSALERANEIKHPVGTQKDID 172

Query: 158 VSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              E     D +     +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 173 HLDELLANADIKTETVIALQPISQK--PRATQLCIETCISR-NWRLSIQTHKYLSI 225


>gi|88859840|ref|ZP_01134479.1| queC protein [Pseudoalteromonas tunicata D2]
 gi|88817834|gb|EAR27650.1| queC protein [Pseudoalteromonas tunicata D2]
          Length = 221

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 92/238 (38%), Gaps = 48/238 (20%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57
           +Y I EIF T+QGE    G  ++F R  GC +            C +CDT          
Sbjct: 1   MYKINEIFETIQGEASFTGMPSIFVRLQGCPV-----------GCAWCDTKQTWETSDTY 49

Query: 58  ------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
                                V QL  L  E+      + ++ V+TGGEP +   VPL +
Sbjct: 50  KVDLQKTVEKKADSELWADVTVAQLLALFVEKG----YQAKHIVITGGEPCMYDLVPLCE 105

Query: 106 ALNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQVN 157
            L+  G+   VET+GT E       W+ VSPK             ++   E+K       
Sbjct: 106 GLHAAGYGTQVETSGTFEIKVPAETWVTVSPKINMRGGYAVLKSAMQRANEIKHPIAMQR 165

Query: 158 VSPE-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              E        G   +   LQP+      + T LAI  C     WRLSVQ HK++GI
Sbjct: 166 HVDELEQLMAECGVTPKLIYLQPISQK--AKATQLAIEVCKAK-NWRLSVQVHKYLGI 220


>gi|109899267|ref|YP_662522.1| radical SAM family protein [Pseudoalteromonas atlantica T6c]
 gi|109701548|gb|ABG41468.1| Radical SAM [Pseudoalteromonas atlantica T6c]
          Length = 248

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 96/244 (39%), Gaps = 51/244 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56
           +  Y I E+F +LQGEG H G  ++F R  GC +            C +CDT        
Sbjct: 23  LNTYKINEVFESLQGEGAHTGVPSIFIRLQGCPV-----------GCPWCDTKHTWEIDQ 71

Query: 57  -------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
                            +   +  +QL  L ++     E      +LTGGEP +     L
Sbjct: 72  NLKVAAPVVMAQNEDTAQWFEHTPEQLLALFKQH----EYTASNIILTGGEPCMYDLTDL 127

Query: 104 IQALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLK-------IKGGQELKL-VFP 154
              L + GF + +ET+GT E     D W+ VSPK     K       +    E+K  V  
Sbjct: 128 SSVLIENGFSVQIETSGTYEILTHPDTWVTVSPKVNMPGKRDVLKSAMHRANEIKHPVAM 187

Query: 155 QVNVSPENYI-------GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
           + ++    ++               LQP+     +  T L I  C     WRLS+QTHKF
Sbjct: 188 EKHIEELEHVLTLLVGSDNPKPLIYLQPISQ--QKRATELCIKTCIAR-NWRLSLQTHKF 244

Query: 208 IGIR 211
           IGI 
Sbjct: 245 IGIE 248


>gi|284009093|emb|CBA76077.1| conserved hypothetical protein [Arsenophonus nasoniae]
          Length = 224

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 93/239 (38%), Gaps = 50/239 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I +IF T+QGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINQIFQTIQGEGYFTGVAAIFVRLQGCPV-----------GCSWCDTKHTWAKNKQQQ 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                         +    + +Q+ DL E+         R+ V+TGGEP L     L   
Sbjct: 52  RPLSIILAKKSDNEEWATCSSEQIIDLFEQ----NHYTARHIVITGGEPCLYDLTELTTN 107

Query: 107 LNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQVN 157
           L K+G++  +ET+GT         W+ VSPK             +    E+K  V  Q +
Sbjct: 108 LEKKGYQCQIETSGTHNIYCSEKTWVTVSPKVAMRGGYKILPAALNRANEIKHPVGRQRD 167

Query: 158 VSPENYI------GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    Y+              LQP+        TNL I  C +   WRLSVQ HK++ I
Sbjct: 168 IDALEYLINQLAPNHPAPHICLQPISQ--NANATNLCIETCIKR-NWRLSVQMHKYLDI 223


>gi|332173072|gb|AEE22326.1| Radical SAM domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 248

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 97/244 (39%), Gaps = 51/244 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56
           +  Y I E+F +LQGEG H G  ++F R  GC +            C +CDT        
Sbjct: 23  LNTYKINEVFESLQGEGAHTGVPSIFIRLQGCPV-----------GCPWCDTKHTWEIDL 71

Query: 57  -------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
                        +   +   +   QL DL  +   T        +LTGGEP +     L
Sbjct: 72  NLKVEASVVMAQNVDTEQWFEHTPKQLLDLFTQHGYTASN----IILTGGEPCMYDLTDL 127

Query: 104 IQALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLK-------IKGGQELKL-VFP 154
              L + G+ + +ET+GT E     D W+ VSPK     K       +    E+K  V  
Sbjct: 128 SSVLIENGYSVQIETSGTYEIMAHPDTWVTVSPKVNMPGKRDVLKSALLRANEIKHPVAM 187

Query: 155 QVNVSPENYIGFDFE-------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
           + ++   + +    E          LQP+     +  T L I  C     WRLS+QTHKF
Sbjct: 188 EKHIEELDQVLTLLEGSNTTKPLIYLQPISQ--QKRATELCIKTCIAR-NWRLSLQTHKF 244

Query: 208 IGIR 211
           IGI 
Sbjct: 245 IGIE 248


>gi|197337552|ref|YP_002158091.1| queuosine biosynthesis protein QueE [Vibrio fischeri MJ11]
 gi|197314804|gb|ACH64253.1| queuosine biosynthesis protein QueE [Vibrio fischeri MJ11]
          Length = 226

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 61/240 (25%), Positives = 93/240 (38%), Gaps = 49/240 (20%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
            L+ I E+F T+QGEG   G  ++F R  GC +            C +CDT         
Sbjct: 4   PLFKINELFETIQGEGTFTGVPSIFLRLQGCPV-----------GCSWCDTKQTWDVELS 52

Query: 58  -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
                                +  Q+ +++E Q        ++ V+TGGEP +     L 
Sbjct: 53  DKTDLQTILAKTEDTPSWTELSSTQIIEMLENQG----YTAKHMVITGGEPCMYDLTSLT 108

Query: 105 QALNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL----- 151
           Q L + G+   +ET+GT         W+ VSPK     K+           E+K      
Sbjct: 109 QELEQHGYRCQIETSGTYPILASENTWVTVSPKINMKGKLPVLPVALSRANEIKHPVGTT 168

Query: 152 -VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               Q++   E     +    +LQP+        T L I  C +   WRLS+QTHK++ I
Sbjct: 169 KDIEQLDALLEGVELLEDVTIALQPISQK--PRATELCIETCIKR-NWRLSIQTHKYLAI 225


>gi|170726897|ref|YP_001760923.1| radical activating enzyme [Shewanella woodyi ATCC 51908]
 gi|169812244|gb|ACA86828.1| radical activating enzyme [Shewanella woodyi ATCC 51908]
          Length = 222

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 100/238 (42%), Gaps = 45/238 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56
           MK Y + E+F T+QGEG + G  A+F R  GC +            C +CDT        
Sbjct: 1   MK-YPVNEVFETIQGEGFYTGVPAIFVRLQGCPV-----------GCSWCDTKHTWELLD 48

Query: 57  -----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
                      + GT G R++    ++LI       E    + V+TGGEP L     + +
Sbjct: 49  VNKVQPEMVIQVDGTIG-RWSELTTSELI-SFLKQKEFTASHVVITGGEPCLHDLTAMTE 106

Query: 106 ALNKRGFEIAVETNGTIEPP-QGIDWICVSPK-------AGCDLKIKGGQELKL-VFPQV 156
             N  G+   +ET+GT E       W+ VSPK       A     +K   E+K  V    
Sbjct: 107 EFNDAGYSTQIETSGTFEVHCSEKTWVTVSPKLKMKAGLAVLPQALKRANEIKHPVATAS 166

Query: 157 NVSPENY----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           ++   +     +    +   LQP+        T LA+  C +   WRLS+QTHK++ I
Sbjct: 167 HIDDLDELLNGVDLKGKTICLQPISQKT--RATELAMRVCIER-NWRLSIQTHKYLDI 221


>gi|119774960|ref|YP_927700.1| radical activating enzyme [Shewanella amazonensis SB2B]
 gi|119767460|gb|ABM00031.1| radical activating enzyme [Shewanella amazonensis SB2B]
          Length = 233

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 65/238 (27%), Positives = 92/238 (38%), Gaps = 44/238 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56
           M  Y I E+F T+QGEG H G  A+F R  GC +            C +CDT        
Sbjct: 11  MTEYPINEVFETIQGEGSHTGLPAIFVRLQGCPV-----------ACPWCDTAQTWDVLE 59

Query: 57  -----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
                      + G+ G R+ +   + L+      G    +  V+TGGEP +     L Q
Sbjct: 60  QSKVAPADVIQVDGSIG-RWAMHSASSLVAAFNQKG-FTAKLVVITGGEPCMHDLTDLTQ 117

Query: 106 ALNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCDLKIK-------GGQELKLVF---P 154
                GF   +ET+GT E       ++ VSPK                  E+K       
Sbjct: 118 GFEAEGFHCQIETSGTFEVHCSDRTYVTVSPKINMKGGYPVLKQALVRANEIKHPVATDA 177

Query: 155 QVNVSPENYIGFDF--ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            ++       G D   +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 178 HIDELDALLEGIDTSGKTICLQPISQK--PRATELAMKTCIAR-NWRLSIQTHKYLNI 232


>gi|327405865|ref|YP_004346703.1| Radical SAM domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327321373|gb|AEA45865.1| Radical SAM domain protein [Fluviicola taffensis DSM 16823]
          Length = 204

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 64/214 (29%), Positives = 94/214 (43%), Gaps = 26/214 (12%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y + E F T+QGEG + G  A F R  GC++            C +CD            
Sbjct: 9   YPVMEHFYTIQGEGKYTGTSAYFIRLGGCDV-----------GCVWCDVKESW-DADIHP 56

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           +  VD+L  ++ +        G   V+TGGEP +     L+ AL+  G  +A+ET+GT  
Sbjct: 57  KMTVDELITVVAQ------YPGELVVITGGEPAMYDLSVLVDALHSIGKYVAIETSGTSP 110

Query: 124 PPQGIDWICVSPKA---GCDLKIKGGQELKLV-FPQVNVSPENYIGF---DFERFSLQPM 176
               +DW   SPK      D       ELK+V F Q ++           D     LQP 
Sbjct: 111 LVGAVDWYTFSPKKFKSPVDEAYNKASELKIVIFHQSDLKWAEEHSLKVNDACVLYLQP- 169

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    E+     I Y   +PKW++S+QTHK++ I
Sbjct: 170 EWSKREQLLPTIIEYVKNHPKWKISLQTHKYLEI 203


>gi|269102881|ref|ZP_06155578.1| queuosine Biosynthesis QueE Radical SAM [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162779|gb|EEZ41275.1| queuosine Biosynthesis QueE Radical SAM [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 222

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 93/239 (38%), Gaps = 49/239 (20%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57
           +Y + E+F T+QGEG   G  A+F R   C +            C +CDT          
Sbjct: 1   MYKLNEVFETIQGEGVFTGVPAIFVRLQICPV-----------GCSWCDTKQTWSAEPQD 49

Query: 58  ------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
                               +   +  L+++Q        ++ V+TGGEP +    PL Q
Sbjct: 50  FTTLDRIMAKTGDSPLWTEIDAQGIVSLLQDQG----YTAKHVVITGGEPCIYDLRPLTQ 105

Query: 106 ALNKRGFEIAVETNGTIEPPQ-GIDWICVSPKAGCDLKIK-------GGQELKLVF---P 154
           AL   G++  +ET+GT E       W+ VSPK     K+           E+K       
Sbjct: 106 ALEASGYQCQIETSGTSEVQATEATWVTVSPKINMKGKLPVLEKALSRANEIKHPVGTQK 165

Query: 155 QVNVSPENYIGFDFE---RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            ++   E   G         +LQP+        T L I  C +   WRLS+QTHK++ I
Sbjct: 166 DLDQLDELLNGVALRSDVTIALQPISQK--PRATELCIETCIKR-NWRLSIQTHKYLAI 221


>gi|332036527|gb|EGI72995.1| queuosine biosynthesis QueE radical SAM [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 221

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 93/234 (39%), Gaps = 40/234 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57
           +Y I E+F T+QGE    G  ++F R  GC +            C +CDT          
Sbjct: 1   MYKINEVFETIQGEASFTGTPSIFLRLQGCPV-----------GCSWCDTKQTWDVDNVY 49

Query: 58  ----QGTKGGRYNVDQLADLIEEQWIT----GEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
                 T   + + D  A+   EQ +          ++ V+TGGEP +    P+   L++
Sbjct: 50  KVSLDETVEKKADSDHWANASAEQILALFQSRGYTAKHVVITGGEPCMFDLNPVCNLLHE 109

Query: 110 RGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQVNVSPE 161
            GF   +ET+GT E       W+ VSPK             +K   E+K          E
Sbjct: 110 HGFSTQIETSGTFEILAPEQTWVTVSPKINMRGGYEVLTSTMKRANEIKHPVAMQKHVEE 169

Query: 162 NYIGF-----DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               F     + +   LQP+        T LAI  C     WRLS+Q HK++GI
Sbjct: 170 LEELFAKTGVNPKLVYLQPISQKVS--ATKLAIDTCIAK-NWRLSIQVHKYLGI 220


>gi|15641377|ref|NP_231009.1| hypothetical protein VC1365 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|153819362|ref|ZP_01972029.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153821325|ref|ZP_01973992.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227081536|ref|YP_002810087.1| hypothetical protein VCM66_1320 [Vibrio cholerae M66-2]
 gi|229505054|ref|ZP_04394564.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae BX 330286]
 gi|229511276|ref|ZP_04400755.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae B33]
 gi|229518394|ref|ZP_04407838.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae RC9]
 gi|229608058|ref|YP_002878706.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae MJ-1236]
 gi|254848487|ref|ZP_05237837.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|298498551|ref|ZP_07008358.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9655859|gb|AAF94523.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|126510107|gb|EAZ72701.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126521143|gb|EAZ78366.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227009424|gb|ACP05636.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|229345109|gb|EEO10083.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae RC9]
 gi|229351241|gb|EEO16182.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae B33]
 gi|229357277|gb|EEO22194.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae BX 330286]
 gi|229370713|gb|ACQ61136.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae MJ-1236]
 gi|254844192|gb|EET22606.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|297542884|gb|EFH78934.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 245

 Score =  220 bits (562), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 91/235 (38%), Gaps = 41/235 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ---- 58
           LY I E+F  +QGEG   G  AVF R  GC +            C +CDT          
Sbjct: 24  LYRINEMFEIIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSD 72

Query: 59  ---------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
                     T          A  + +++     + ++ V+TGGEP +     L QA   
Sbjct: 73  QTSFSQILLKTNDAPTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCIYDLTELTQAFEA 132

Query: 110 RGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSP 160
            G    +ET+GT E       W+ VSPK     K+           E+K  V  + ++  
Sbjct: 133 MGCRCQIETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDN 192

Query: 161 ENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            + +    +       +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 193 LDELLARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244


>gi|260061953|ref|YP_003195033.1| hypothetical protein RB2501_10187 [Robiginitalea biformata
           HTCC2501]
 gi|88783515|gb|EAR14686.1| hypothetical protein RB2501_10187 [Robiginitalea biformata
           HTCC2501]
          Length = 210

 Score =  220 bits (562), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 60/215 (27%), Positives = 91/215 (42%), Gaps = 27/215 (12%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + E F T+QGEG H G  A F R  GC++            C +CD      +    
Sbjct: 15  MLPLMEAFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCDVK----ESWNA 59

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +    +  ++ +     +      V+TGGEPL+    PL   L  RG +I +ET+G  
Sbjct: 60  DLHPPTAVDTIVRDAAAASD----TIVVTGGEPLMWDMAPLTSRLKSRGMKIHIETSGAY 115

Query: 123 EPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVN----VSPENYIGFDFERFSLQP 175
                 DWIC+SPK          +   ELK++    +          +        LQP
Sbjct: 116 PLTGTWDWICLSPKKNKAPVGDIHQRAHELKVIVYNRHDLKFAEEHAELTSPDCLLYLQP 175

Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +    E  T L + Y   NP+WR+S+QTHK++ I
Sbjct: 176 -EWSVRERVTPLIVEYVMANPRWRVSLQTHKYLNI 209


>gi|149191047|ref|ZP_01869307.1| organic radical activating enzyme [Vibrio shilonii AK1]
 gi|148835075|gb|EDL52052.1| organic radical activating enzyme [Vibrio shilonii AK1]
          Length = 226

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 66/237 (27%), Positives = 96/237 (40%), Gaps = 43/237 (18%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             + I E+F T+QGEG   G  AVF R   CN+            C +CDT        +
Sbjct: 4   TRFKINEMFETIQGEGMFTGVPAVFIRLQICNV-----------GCSWCDTKQTWDANNE 52

Query: 62  GGR--------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
             R              ++    A+++   + + +   ++ V+TGGEP       L +A 
Sbjct: 53  DQRSFGEIITKQGDSPTWSDVDAAEIVA-MYQSQQFNAKHIVITGGEPCEYDLTALCEAF 111

Query: 108 NKRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNV 158
              G    +ET+GT E     + W+ VSPK     K+           E+K  V  Q NV
Sbjct: 112 EAIGCRCQIETSGTSEIRVTPVTWVTVSPKVAMKGKLPVLSSSLERADEIKHPVATQKNV 171

Query: 159 SPENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              + +    E       +LQP+        T L I  C Q   WRLSVQTHK++ I
Sbjct: 172 DQLDELLQGVELKSDVVIALQPISQK--PRATELCIETCIQR-NWRLSVQTHKYLSI 225


>gi|56460021|ref|YP_155302.1| organic radical activating protein [Idiomarina loihiensis L2TR]
 gi|56179031|gb|AAV81753.1| Organic radical activating enzyme [Idiomarina loihiensis L2TR]
          Length = 233

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/238 (27%), Positives = 95/238 (39%), Gaps = 47/238 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I EIF TLQGEG   G  ++F R  GC +            C +CDT           
Sbjct: 13  YRINEIFETLQGEGTFTGVPSIFLRLQGCPV-----------GCPWCDTQHTWETNPTDQ 61

Query: 58  --------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
                   +     +++     D+I      G    ++ V+TGGEP +   +PL +AL  
Sbjct: 62  VSIDALMAKTEASAKWSEMTAEDIIARFEQEG-YSAKHVVITGGEPAMFDLLPLGKALEA 120

Query: 110 RGFEIAVETNGTIEPP-QGIDWICVSPKAGCDL-------KIKGGQELKLVFPQVNVSPE 161
           +G+++ +ET+GT E       W+ VSPK             +    E+K   P       
Sbjct: 121 KGYQLQIETSGTFELKVTDSTWVTVSPKLDMPGGYLVRPDCMARANEIK--HPIAMQKHI 178

Query: 162 NYIGFDFER--------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           + +    ER          LQP+        T LA+  C     WRLSVQ HK++ I 
Sbjct: 179 DALDSLLERCPPKADAIICLQPISQ--RPRATELAMKTCIAR-NWRLSVQMHKYLNIE 233


>gi|256425881|ref|YP_003126534.1| hypothetical protein Cpin_6932 [Chitinophaga pinensis DSM 2588]
 gi|256040789|gb|ACU64333.1| conserved hypothetical protein [Chitinophaga pinensis DSM 2588]
          Length = 209

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 68/214 (31%), Positives = 101/214 (47%), Gaps = 26/214 (12%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F TLQGEG + G+ A F R  GC++            C +CD      +     
Sbjct: 14  LPVMERFYTLQGEGNYQGQAAYFIRLGGCDV-----------GCHWCDVK----ESWDAS 58

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R+ +  +++L+ +        GR  V+TGGEPL+    PL  AL+   F   +ET+G+  
Sbjct: 59  RHPLIAISELVRD---AAVHPGRIAVITGGEPLMHNLDPLTDALHAASFRTHMETSGSSP 115

Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELKLV-FPQVNVS-PENYIGFDFER--FSLQPM 176
                DWI +SP   KA      +   ELK+V F + + +  E Y           LQP 
Sbjct: 116 LSGHWDWITLSPKKFKAPLPEVCEVAHELKVVIFNKSDFAWAEKYAALAGPHCKLYLQP- 174

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +     + T L I Y  +NPKW+LS+QTHK+I +
Sbjct: 175 EWEKSAQVTPLIIDYIKENPKWQLSLQTHKYINV 208


>gi|146298250|ref|YP_001192841.1| radical SAM domain-containing protein [Flavobacterium johnsoniae
           UW101]
 gi|146152668|gb|ABQ03522.1| Radical SAM domain protein [Flavobacterium johnsoniae UW101]
          Length = 210

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 60/215 (27%), Positives = 89/215 (41%), Gaps = 27/215 (12%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + E F T+QGEG H G  A F R  GC++            C +CD      +    
Sbjct: 15  MLPLMEEFYTIQGEGFHTGTAAYFIRIGGCDV-----------GCHWCDVK----ESWNA 59

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +    +  ++              V+TGGEPL      L Q L  +  ++ +ET+G  
Sbjct: 60  ELHPPTNIDIIVN----NASSYANTVVVTGGEPLTWDMTLLTQQLKDKNLKVHIETSGAY 115

Query: 123 EPPQGIDWICVSPKAG---CDLKIKGGQELKLV----FPQVNVSPENYIGFDFERFSLQP 175
                 DWIC+SPK              ELK++       +    +  +  D     LQP
Sbjct: 116 PLSGTWDWICLSPKKNKLPTPDVYANAHELKVIIYNKHDFIFAEEQAELVNDNAILFLQP 175

Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +    EE T L + Y   NPKWR+S+QTHK++ I
Sbjct: 176 -EWSKKEEMTPLIVDYVMNNPKWRVSLQTHKYLNI 209


>gi|326800682|ref|YP_004318501.1| radical SAM protein [Sphingobacterium sp. 21]
 gi|326551446|gb|ADZ79831.1| Radical SAM domain protein [Sphingobacterium sp. 21]
          Length = 230

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 63/216 (29%), Positives = 95/216 (43%), Gaps = 26/216 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
            L  + E F T+QGEG H G+ A F R  GC++            C +CD      +   
Sbjct: 33  TLLPLMEEFYTIQGEGYHTGKAAYFIRLGGCDV-----------GCHWCDVK----ESWD 77

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
              + + +  D+I           +  V+TGGEPL+     L + L   G +  +ET+G 
Sbjct: 78  AELHPLTKADDIIRN---AARYPAKTVVITGGEPLIYNLDYLTRGLQDAGIKTFIETSGA 134

Query: 122 IEPPQGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVSPENYIGFDF---ERFSLQ 174
                  DW+C+SP   KA     I+   ELK +VF + +               +  LQ
Sbjct: 135 YPLSGHWDWVCLSPKKFKAPLPDVIEAAGELKVIVFNKSDFEWAERYAAQIPVGRKLYLQ 194

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P +     + T L I Y  +NPKW +S+QTHK++ I
Sbjct: 195 P-EWSKAAQMTPLIIDYVKENPKWEISLQTHKYLNI 229


>gi|209809367|ref|YP_002264905.1| hypothetical protein VSAL_II0580 [Aliivibrio salmonicida LFI1238]
 gi|208010929|emb|CAQ81334.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 226

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 90/239 (37%), Gaps = 49/239 (20%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57
           L+ I E+F T+QGEG   G  ++F R  GC +            C +CDT          
Sbjct: 5   LFKINELFETIQGEGTFTGVPSIFLRLQGCPV-----------GCSWCDTKQTWDVELSD 53

Query: 58  ------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
                                  Q+ D++ +Q        ++ V+TGGEP +     L +
Sbjct: 54  KTDLATILAKTEDAPSWTELTALQIIDMLVQQG----YTAKHMVITGGEPCMYDLTSLTE 109

Query: 106 ALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDLKIK-------GGQELKL------ 151
            L K G+   +ET+GT         W+ VSPK     K+           E+K       
Sbjct: 110 ELEKNGYRCQIETSGTYPILTSNNTWVTVSPKINMKGKLPVLDEALMRANEIKHPVGTTK 169

Query: 152 VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              Q+    +          +LQP+        T L I  C +   WRLS+QTHK++ I
Sbjct: 170 DIEQLEALLDGVNLLTDVTIALQPISQK--PRATELCIETCIKK-NWRLSIQTHKYLAI 225


>gi|167754369|ref|ZP_02426496.1| hypothetical protein ALIPUT_02663 [Alistipes putredinis DSM 17216]
 gi|167658994|gb|EDS03124.1| hypothetical protein ALIPUT_02663 [Alistipes putredinis DSM 17216]
          Length = 194

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 70/217 (32%), Positives = 106/217 (48%), Gaps = 34/217 (15%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + EIF ++QGEG + G  A+F R +GCNL           +C FCDT+           
Sbjct: 2   RVNEIFYSIQGEGRYTGTPAIFIRLAGCNL-----------RCDFCDTEH-----QPYQD 45

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-RGFEIAVETNGTIE 123
              +++   I       +    + V+TGGEP+LQ+   LI  L    G  + VETNGTI 
Sbjct: 46  LTEEEIMRQI------ADFPTSHVVITGGEPMLQITQSLIHRLRNGAGKFVQVETNGTIP 99

Query: 124 PPQ--GIDWICVSPK----AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177
                 +DWI  SPK       +L+++   ELK+V+   +++   Y G + + + LQP D
Sbjct: 100 IKCYLPVDWITCSPKFDFCPHAELRLQRIDELKVVYQGQDMT--AYDGIEAKEYYLQPCD 157

Query: 178 GPF---LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                   EN    I+Y   +PKW+LS+QT K + +R
Sbjct: 158 FKDEARNAENLAATINYIKSHPKWKLSLQTQKILSVR 194


>gi|114563049|ref|YP_750562.1| radical activating enzyme [Shewanella frigidimarina NCIMB 400]
 gi|114334342|gb|ABI71724.1| radical activating enzyme [Shewanella frigidimarina NCIMB 400]
          Length = 222

 Score =  217 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 95/237 (40%), Gaps = 43/237 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK Y + E+F T+QGEG + G  A+F R  GC +            C +CDT        
Sbjct: 1   MK-YPVNEVFETIQGEGTYTGVPALFVRLQGCPV-----------GCAWCDTKQTW-DVL 47

Query: 61  KGGRYNVDQLADL--------------IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
              +   +Q+  +              + + +       ++ VLTGGEP L     L   
Sbjct: 48  PENKVTAEQVIQVDGTIGRWADHTGYTLLQAFHDKGFTAKHIVLTGGEPCLYNLTELTTI 107

Query: 107 LNKRGFEIAVETNGTIEPPQGID-WICVSPKAGC-------DLKIKGGQELKLVFPQVNV 158
             + G+++ +ET+GT +     D W+ VSPK          +  +    E+K      + 
Sbjct: 108 FIEAGYQVQIETSGTFDVKCHSDVWVTVSPKINMKGGYKVLEQALNRANEIKHPIATEHH 167

Query: 159 SPENY-----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             E       I    +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 168 IDELDKLLLNIDVSDKTICLQPISQK--ARATELAMKVCISR-NWRLSIQTHKYLNI 221


>gi|71280858|ref|YP_269588.1| radical SAM domain-containing protein [Colwellia psychrerythraea
           34H]
 gi|71146598|gb|AAZ27071.1| radical SAM domain protein [Colwellia psychrerythraea 34H]
          Length = 222

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 102/238 (42%), Gaps = 48/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F T+QGEG   G+ ++F R  GC +            C +CDT           
Sbjct: 3   YKINELFETIQGEGSFTGQPSIFIRLQGCPV-----------GCSWCDTKHTWDIELDDQ 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      + ++   ++ + +  L++E       + ++ V+TGGEP +    PL + 
Sbjct: 52  VSPDIMLAKKAETSQWANFSAEDILALVKE----KHFKAKHIVITGGEPCMVDLTPLCET 107

Query: 107 LNKRGFEIAVETNGTIE-PPQGIDWICVSPKA----GCDL---KIKGGQELKL-VFPQVN 157
               G+   +ET+GT E       W+ VSPK     G D+    +    E+K  V  + N
Sbjct: 108 FEDLGYSTQIETSGTFEIITTEKCWVTVSPKIKMRGGYDILASAMSRANEIKHPVATEQN 167

Query: 158 VSPENYI----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           V     +      +     LQP+     +  T LAI+ C  N  WRLSVQ HK+IGI 
Sbjct: 168 VDDLKELLAMHQVENTPVYLQPISQK--KRATELAIATCIAN-NWRLSVQVHKYIGIE 222


>gi|308050954|ref|YP_003914520.1| hypothetical protein Fbal_3247 [Ferrimonas balearica DSM 9799]
 gi|307633144|gb|ADN77446.1| conserved hypothetical protein [Ferrimonas balearica DSM 9799]
          Length = 224

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 66/235 (28%), Positives = 88/235 (37%), Gaps = 43/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y + E+F T+QGEG H G  A+F R  GC +            C +CDT           
Sbjct: 6   YPVNELFETIQGEGVHTGVPAIFLRLQGCPV-----------GCSWCDTKHTWDLQENRK 54

Query: 64  RYNVDQLADLIEEQWI------------TGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111
               D L    E                       + V+TGGEP +    PL +     G
Sbjct: 55  VMLSDVLVKTEESVMWCSVGPREILDLCMSRYTATHLVITGGEPCMYDLQPLCEVFEAEG 114

Query: 112 FEIAVETNGTIEP-PQGIDWICVSPKAGCDL-------KIKGGQELKLVFPQVNVSPENY 163
           + I VET+GT         W+ VSPK             I    E+K   P   V     
Sbjct: 115 YSIQVETSGTYPVMVSDSAWVTVSPKIKMRGGLSVLASAIDRADEIK--HPVATVKDIEQ 172

Query: 164 IGF-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +            + +LQP+      + T LAI  C +   WRLSVQTHK++GI 
Sbjct: 173 LDELLTGSAGADAKVALQPISQK--PKATELAIRTCIKR-NWRLSVQTHKYLGIE 224


>gi|311746196|ref|ZP_07719981.1| radical activating enzyme [Algoriphagus sp. PR1]
 gi|126576423|gb|EAZ80701.1| radical activating enzyme [Algoriphagus sp. PR1]
          Length = 208

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 26/214 (12%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F T+QGEG   G  A F R  GC++            C +CD      +  + G
Sbjct: 13  LPLMEAFYTIQGEGRFTGHPAYFIRLGGCDV-----------GCVWCDVK----ESWEAG 57

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           ++ +  + +++ E     +  GR  V+TGGEPL+    PL   L ++GF   +ET+G   
Sbjct: 58  KWPILPIEEIVAEAV---KYPGRLVVITGGEPLMYDLGPLTSLLKEKGFTTNIETSGAHP 114

Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVSPENYIGF---DFERFSLQPM 176
                DW+C SP   K       K   ELK +VF   + +          +     LQP 
Sbjct: 115 FSGDFDWVCFSPKKFKKPHPSIYKVANELKVVVFHNSDFAFAEEHALKVNENCELRLQP- 173

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    E+ T L I+Y   +P W++S+QTHKF+ I
Sbjct: 174 EWSKSEKFTPLIINYSKYHPNWKISLQTHKFMDI 207


>gi|91793369|ref|YP_563020.1| radical activating enzyme [Shewanella denitrificans OS217]
 gi|91715371|gb|ABE55297.1| radical activating enzyme [Shewanella denitrificans OS217]
          Length = 222

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 91/235 (38%), Gaps = 44/235 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y + E+F T+QGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPVNEVFETIQGEGCFTGVPALFVRLQGCPV-----------GCAWCDTKQTWDVLADNK 51

Query: 57  --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
                   + GT G   N D  A LI      G    ++ VLTGGEP L     +     
Sbjct: 52  VTPEQVITVDGTIGRWANHDG-ASLITAFKAKG-FTAKHIVLTGGEPCLYDLTDITHDFI 109

Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKLVFPQVNVSP 160
             G+ + +ET+GT E     D W+ VSPK       K          E+K      N   
Sbjct: 110 AAGYSVQIETSGTFEVKCHQDVWVTVSPKINMKGGYKVLEQALIRANEIKHPIATQNHID 169

Query: 161 E-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E       I    +   LQP+        T LA+  C     WRLS+QTHK++ I
Sbjct: 170 ELDELLADIDLSGKTICLQPISQKV--RATELAMKTCIAR-NWRLSIQTHKYLNI 221


>gi|85711961|ref|ZP_01043015.1| Organic radical activating enzyme [Idiomarina baltica OS145]
 gi|85694147|gb|EAQ32091.1| Organic radical activating enzyme [Idiomarina baltica OS145]
          Length = 223

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 87/238 (36%), Gaps = 43/238 (18%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
             Y I EIF TLQGEG   G  ++F R  GC +            C +CDT         
Sbjct: 1   MTYRINEIFETLQGEGTFTGVPSIFIRLQGCPV-----------GCPWCDTQHTWDVKQE 49

Query: 58  ----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
                     +      +     AD++ E         ++ V+TGGEP +     L + L
Sbjct: 50  DQVSVATMMAKSEATSEWAEMSSADIV-ELIKQRGYRAKHVVITGGEPAMYDLRELGEVL 108

Query: 108 NKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDL-------KIKGGQELKLVFPQVNVS 159
             +G  + +ET+GT E       W+ VSPK             +    E+K         
Sbjct: 109 EAQGMRLQIETSGTYELLITAGTWVTVSPKLDMPGGYLVRSDCLSRADEIKHPIAMQKHI 168

Query: 160 PENYIGFDFER------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                    ++        LQP+        T LA+  C +   WRLSVQ HK++ I 
Sbjct: 169 DALDRLLQGQKLKSDVVICLQPISQ--RPRATELAMKTCIER-NWRLSVQMHKYLNIE 223


>gi|148982371|ref|ZP_01816736.1| organic radical activating enzyme [Vibrionales bacterium SWAT-3]
 gi|145960507|gb|EDK25873.1| organic radical activating enzyme [Vibrionales bacterium SWAT-3]
          Length = 216

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 93/230 (40%), Gaps = 43/230 (18%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------------ 56
           +F T+QGEG   G  AVF R   C +            C +CDT                
Sbjct: 1   MFETIQGEGVFTGVPAVFVRLQICPV-----------GCSWCDTKQTWEALPEDETSLGD 49

Query: 57  --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
             ++      ++      ++ E    G    ++ V+TGGEP +   VPL +A  K G   
Sbjct: 50  IMVKTEDSPTWSSIDAQGIVNEYIKQG-YTAKHIVITGGEPCIYDLVPLTEAFEKHGCRC 108

Query: 115 AVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKL------VFPQVNVSP 160
            +ET+GT E     D W+ VSPK     K++          E+K          Q++   
Sbjct: 109 QIETSGTSEVKATPDTWVTVSPKVAMKAKLEILDSALQRANEIKHPVGTSKDIEQLDGLL 168

Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           E     D    +LQP+     +  T L I  C +   WRLS+QTHK++ I
Sbjct: 169 ERAEVSDDTVIALQPISQK--DRATKLCIDTCIER-NWRLSIQTHKYLSI 215


>gi|71282067|ref|YP_269647.1| hypothetical protein CPS_2947 [Colwellia psychrerythraea 34H]
 gi|71147807|gb|AAZ28280.1| conserved hypothetical protein [Colwellia psychrerythraea 34H]
          Length = 226

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 101/240 (42%), Gaps = 48/240 (20%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
             Y I EIF TLQGEG   G+ ++F R  GC +            C +CDT         
Sbjct: 5   TTYKINEIFETLQGEGSFTGQPSIFIRLQGCPV-----------GCSWCDTKHTWEVSLE 53

Query: 58  -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
                        +    G + + QL    +E +++   + ++ V+TGGEP +    PL 
Sbjct: 54  QEVAQNNIVSKKSENDSWGIFTIVQL----KELFLSEGYQAKHIVITGGEPCMYDLKPLC 109

Query: 105 QALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQ 155
           Q     G+   VET+GT E       W+ VSPK       K          E+K  V  +
Sbjct: 110 QNFEALGYSCQVETSGTFEIQVSKKCWVTVSPKVNMKGGFKVLKSALLRADEIKHPVATE 169

Query: 156 VNVSP----ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            ++       N    + ++  +QP+     +  T LAI  C +N  WRLSVQ HK+IGI 
Sbjct: 170 QHIDDLKALLNEHEIENKQIYIQPISQK--KRATELAIRSCIEN-NWRLSVQVHKYIGIE 226


>gi|258621538|ref|ZP_05716571.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258586156|gb|EEW10872.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 216

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 91/230 (39%), Gaps = 43/230 (18%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------------ 56
           +F T+QGEG   G  AVF R  GC +            C +CDT                
Sbjct: 1   MFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLESDQTSFPQ 49

Query: 57  --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
             ++ +    +      D+IE     G  + ++ V+TGGEP +     L QA    G + 
Sbjct: 50  ILLKTSDAPTWCQASAQDVIERYRAQG-YQAKHIVITGGEPCIYDLTELTQAFEAIGCQC 108

Query: 115 AVETNGTIEPPQG-IDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSPENYIG 165
            +ET+GT E       W+ VSPK     K+           E+K  V  + ++   + + 
Sbjct: 109 QIETSGTYEILATPTTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATENDIDKLDELL 168

Query: 166 FDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                      +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 169 VRASVDAKTVIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215


>gi|227537400|ref|ZP_03967449.1| radical SAM domain protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242778|gb|EEI92793.1| radical SAM domain protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 207

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 64/214 (29%), Positives = 92/214 (42%), Gaps = 26/214 (12%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F T+QGEG H G+ A F R  GC++            C +CD     ++ +   
Sbjct: 12  LPLMEEFYTIQGEGYHTGKAAYFIRLGGCDV-----------GCHWCD-----VKESWDA 55

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
             +    AD I E         +  V+TGGEPL+     L   L   G +  +ET+G   
Sbjct: 56  ELHPLTAADTIVEH--ANVHPSKTVVVTGGEPLIYNLDYLTSQLQNAGIQTFLETSGAYP 113

Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVN----VSPENYIGFDFERFSLQPM 176
                DWIC+SP   KA     +    ELK++    +          +  D  +  LQP 
Sbjct: 114 LSGHWDWICLSPKKFKAPRPDVLANAGELKVIVFNKSDFQWAEEHARLVNDTCKLYLQP- 172

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +     E T L I Y   NPKW +S+QTHK++ I
Sbjct: 173 EWSKAAEMTPLIIDYVMANPKWEISLQTHKYLNI 206


>gi|300772841|ref|ZP_07082710.1| radical SAM domain protein [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300759012|gb|EFK55839.1| radical SAM domain protein [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 207

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 64/214 (29%), Positives = 92/214 (42%), Gaps = 26/214 (12%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F T+QGEG H G+ A F R  GC++            C +CD     ++ +   
Sbjct: 12  LPLMEEFYTIQGEGYHTGKAAYFIRLGGCDV-----------GCHWCD-----VKESWDA 55

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
             +    AD I E         +  V+TGGEPL+     L   L   G +  +ET+G   
Sbjct: 56  ELHPLTAADTIVEH--ANVHPSKTVVVTGGEPLIYNLDYLTSQLQNAGIQTFLETSGAYP 113

Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVN----VSPENYIGFDFERFSLQPM 176
                DWIC+SP   KA     +    ELK++    +          +  D  +  LQP 
Sbjct: 114 LSGHWDWICLSPKKFKAPRPDVLANAGELKVIVFNKSDFQWAEEHARLVSDTCKLYLQP- 172

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +     E T L I Y   NPKW +S+QTHK++ I
Sbjct: 173 EWSKAAEMTPLIIDYVMANPKWEISLQTHKYLNI 206


>gi|34557972|ref|NP_907787.1| organic radical activating enzyme [Wolinella succinogenes DSM 1740]
 gi|34483690|emb|CAE10687.1| conserved hypothetical protein-Organic radical activating enzymes
           [Wolinella succinogenes]
          Length = 193

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 69/211 (32%), Positives = 96/211 (45%), Gaps = 22/211 (10%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y + EIF ++QGEG H+G+ A+F R  GCNL            C FCD           
Sbjct: 1   MYPVTEIFYSIQGEGHHSGKAALFVRLHGCNL-----------ACDFCD-----EPSHTQ 44

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG-T 121
           G Y       ++E+          + V+TGGEP L    PLI+ L K G+ +A+ETNG  
Sbjct: 45  GEYENQSQEAILEQLRA---YPAHFVVITGGEPTLFDLNPLIKFLQKEGYFVAIETNGYN 101

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD--GP 179
           +   Q  DWI  SPK    L  +G  ELK +    +        F  +   LQP      
Sbjct: 102 LAHIQAADWITYSPKNWNTLAKEGYDELKFIIHHASDITPLLALFQEKPLYLQPQSDGSA 161

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               N    +    ++P+WRLS+QTHK + I
Sbjct: 162 LNAANVARCVELILEHPEWRLSLQTHKILEI 192


>gi|56750231|ref|YP_170932.1| hypothetical protein syc0222_c [Synechococcus elongatus PCC 6301]
 gi|81300141|ref|YP_400349.1| hypothetical protein Synpcc7942_1332 [Synechococcus elongatus PCC
           7942]
 gi|56685190|dbj|BAD78412.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81169022|gb|ABB57362.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 206

 Score =  214 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 67/216 (31%), Positives = 100/216 (46%), Gaps = 27/216 (12%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I E F ++QGEG   G  A F R +GC++            C +CDT     Q    
Sbjct: 11  TLPIVETFHSVQGEGAWMGCSAFFIRLAGCDV-----------GCPWCDTK----QSWPR 55

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
            R+    +ADL+E        + ++ V+TGGEPLL     L  AL  +G    +ET+G+ 
Sbjct: 56  DRHPEVAIADLVEAAVAA---QPQFVVITGGEPLLHDLTELTNALRSQGLRCHLETSGSA 112

Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELKLVF---PQVNVSPENYIGFDFERFS-LQP 175
            P    DW+ +SP   KA          ELK+V       + + +  I         LQP
Sbjct: 113 SPSGSFDWVTLSPKPFKAVVAANYNWANELKVVIQTDADFDFAEQEAIAVPETTLKLLQP 172

Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                  E+ +  ++Y  Q+P+WR+S+QTHKF+G+R
Sbjct: 173 E--WNSPESCDRVVNYVRQHPRWRVSLQTHKFLGVR 206


>gi|86145928|ref|ZP_01064256.1| Organic radical activating enzyme [Vibrio sp. MED222]
 gi|85836383|gb|EAQ54513.1| Organic radical activating enzyme [Vibrio sp. MED222]
          Length = 216

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 91/230 (39%), Gaps = 43/230 (18%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------------ 56
           +F T+QGEG   G  AVF R   C +            C +CDT                
Sbjct: 1   MFETIQGEGVFTGVPAVFVRLQICPV-----------GCSWCDTKQTWEALPEDETSLGD 49

Query: 57  --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
             ++      +       ++ E    G    ++ V+TGGEP +   VPL +A  + G   
Sbjct: 50  IMVKTEDSPTWTAIDAQGIVNEYIKQG-YTAKHIVITGGEPCIYDLVPLTEAFEQHGCRC 108

Query: 115 AVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKL------VFPQVNVSP 160
            +ET+GT E     D W+ VSPK     K+           E+K          Q++V  
Sbjct: 109 QIETSGTSEVKATPDTWVTVSPKVAMKAKLDILDSALVRANEIKHPVGTGKDIEQLDVLI 168

Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                 +    +LQP+     E  T L I  C +   WRLS+QTHK++ I
Sbjct: 169 ARADVPENTVIALQPISQK--ERATQLCIDTCIER-NWRLSIQTHKYLSI 215


>gi|84387075|ref|ZP_00990098.1| Organic radical activating enzyme [Vibrio splendidus 12B01]
 gi|84378150|gb|EAP95010.1| Organic radical activating enzyme [Vibrio splendidus 12B01]
          Length = 216

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 91/230 (39%), Gaps = 43/230 (18%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------------ 56
           +F T+QGEG   G  AVF R   C +            C +CDT                
Sbjct: 1   MFETIQGEGVFTGVPAVFVRLQICPV-----------GCSWCDTKQTWEALPEDETSLGD 49

Query: 57  --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
             ++      ++      ++ E    G    ++ V+TGGEP +   VPL +A  + G   
Sbjct: 50  IMVKTEDSPTWSAIDAQGIVNEYIKQG-YTAKHIVITGGEPCIYDLVPLTEAFEQHGCRC 108

Query: 115 AVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKL------VFPQVNVSP 160
            +ET+GT E     D W+ VSPK     K+           E+K          Q++   
Sbjct: 109 QIETSGTSEVKATPDTWVTVSPKVAMKAKLDILDSALVRANEIKHPVGTGKDIEQLDALI 168

Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                 +    +LQP+     E  T L I  C +   WRLS+QTHK++ I
Sbjct: 169 ARADVPENTVIALQPISQK--ERATQLCIDTCIER-NWRLSIQTHKYLSI 215


>gi|91224504|ref|ZP_01259766.1| hypothetical protein V12G01_17742 [Vibrio alginolyticus 12G01]
 gi|91190846|gb|EAS77113.1| hypothetical protein V12G01_17742 [Vibrio alginolyticus 12G01]
          Length = 216

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 91/229 (39%), Gaps = 41/229 (17%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68
           +F T+QGEG   G  AVF R   C +            C +CDT           R   D
Sbjct: 1   MFETIQGEGVFTGVPAVFVRLQECPV-----------GCSWCDTKQTWYADENDQRQIGD 49

Query: 69  QL-------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
            L             A+ I EQ+       ++ V+TGGEP +    PL +A    G +  
Sbjct: 50  ILVKTEDSPTWCVASAENIVEQYQQQGFNAKHIVITGGEPCIYDLRPLTKAFEDMGCQCQ 109

Query: 116 VETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSPENYIGF 166
           +ET+GT E       W+ VSPK     K+           E+K  V  Q ++   + +  
Sbjct: 110 IETSGTSEVITSENTWVTVSPKVAMKGKLPVLNSALERANEIKHPVGTQKDIDHLDDLLA 169

Query: 167 DFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +         +LQP+        T L I  C     WRLSVQTHK++ I
Sbjct: 170 NANVAAETIIALQPISQK--PRATQLCIDTCIAR-NWRLSVQTHKYLSI 215


>gi|258627553|ref|ZP_05722330.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258580135|gb|EEW05107.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 216

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 92/230 (40%), Gaps = 43/230 (18%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------------ 56
           +F T+QGEG   G  AVF R  GC +            C +CDT                
Sbjct: 1   MFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLESDQTSFPQ 49

Query: 57  --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
             ++ +    +      D+IE     G  + ++ V+TGGEP +     L QA    G + 
Sbjct: 50  ILLKTSDAPTWCQASAQDVIERYRAQG-YQAKHIVITGGEPCIYDLTELTQAFEAIGCQC 108

Query: 115 AVETNGTIEPPQG-IDWICVSPKAGCDLK-------IKGGQELKL-VFPQVNVSPENYIG 165
            +ET+GT E       W+ VSPK     K       ++   E+K  V  + ++   + + 
Sbjct: 109 QIETSGTYEILATPTTWVTVSPKVAMKGKLLILDSALQRANEIKHPVATEKDIDNLDELL 168

Query: 166 FDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                      +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 169 VRASVDTKTVIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215


>gi|78185803|ref|YP_378237.1| organic radical activating protein [Synechococcus sp. CC9902]
 gi|78170097|gb|ABB27194.1| possible organic radical activating enzyme [Synechococcus sp.
           CC9902]
          Length = 205

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 67/218 (30%), Positives = 99/218 (45%), Gaps = 25/218 (11%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   + E F +LQGEG H GR A F R +GCN+            C +CDT         
Sbjct: 5   RSIPVVETFHSLQGEGHHYGRSAFFIRLAGCNV-----------GCTWCDTKHSW----P 49

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNG 120
              +    +  L  +     +    + V+TGGEPL     PL  AL++  G  I +ET+G
Sbjct: 50  MANHAKQDVDALAVQATQAKDAGAAFVVITGGEPLHHNLQPLTDALDRSCGLPIHLETSG 109

Query: 121 TIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVF-PQVNVSPENYIGFD---FERFSL 173
             +     DW+ +SPK     +   +    ELK+V     +VS  + +  D        +
Sbjct: 110 VDQLSGRFDWVTLSPKRHHPPQQALLSRCDELKVVVLDTDDVSFAHAMANDTSTAAHLLV 169

Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           QP+     E    LAI +  Q+P+WRLS+Q HKF+ IR
Sbjct: 170 QPV--WDSETAQELAIHHVKQHPRWRLSLQNHKFLQIR 205


>gi|308049094|ref|YP_003912660.1| radical activating enzyme [Ferrimonas balearica DSM 9799]
 gi|307631284|gb|ADN75586.1| radical activating enzyme [Ferrimonas balearica DSM 9799]
          Length = 222

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 94/234 (40%), Gaps = 42/234 (17%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y + EIF T+QGEG   G  AVF R  GC +            C +CDT           
Sbjct: 3   YPVNEIFETIQGEGHFTGVPAVFLRLQGCPV-----------GCAWCDTRHTWEVLAEDQ 51

Query: 58  --------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
                    G    R+    L  L+       +   R+ V+TGGEP +    PL + +  
Sbjct: 52  VEPGLVIGAGDGEPRWAQWPLEQLVA-HLTGPQYRARHLVITGGEPCMYDLRPLTERMIA 110

Query: 110 RGFEIAVETNGTIEPPQGI-DWICVSPKAGCDL-------KIKGGQELKL-VFPQVNVSP 160
            G+   +ET+G  E       W+ VSPK G           ++   E+K  V  Q +V  
Sbjct: 111 AGWRCQIETSGCFEVKTDPQTWVTVSPKVGMKGGLEVQRSALERANEIKHPVAMQKHVDE 170

Query: 161 ENY----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +     +  + +  +LQP+          L +  C +   WRLSVQTHK++ I
Sbjct: 171 LDALLAGVALEGKEVALQPISQQH--RANELCVRVCIER-NWRLSVQTHKYLNI 221


>gi|262192386|ref|ZP_06050539.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae CT
           5369-93]
 gi|262031739|gb|EEY50324.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae CT
           5369-93]
          Length = 216

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 91/230 (39%), Gaps = 43/230 (18%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------------ 56
           +F T+QGEG   G  AVF R  GC +            C +CDT                
Sbjct: 1   MFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSDQTSFSQ 49

Query: 57  --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
             ++ +    +      ++++     G  + ++ V+TGGEP +     L QA    G   
Sbjct: 50  ILLKTSDAPTWCQASAQEVVQRYQAQG-YQAKHIVITGGEPCIYDLTELTQAFEAMGCRC 108

Query: 115 AVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSPENYIG 165
            +ET+GT E       W+ VSPK     K+           E+K  V  + ++   + + 
Sbjct: 109 QIETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELL 168

Query: 166 FDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              +       +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 169 ARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215


>gi|120437087|ref|YP_862773.1| hypothetical protein GFO_2752 [Gramella forsetii KT0803]
 gi|117579237|emb|CAL67706.1| conserved hypothetical protein [Gramella forsetii KT0803]
          Length = 210

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 63/215 (29%), Positives = 96/215 (44%), Gaps = 27/215 (12%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + E F T+QGEG H G  A F R  GC++            C +CD      +    
Sbjct: 15  MLPLMEEFYTIQGEGFHKGTAAYFIRIGGCDV-----------GCHWCDVK----ESWDA 59

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +   ++  ++E       K  +  V+TGGEPL      L  +L K+G +I +ET+G  
Sbjct: 60  EVHPPTRIGQIVE----NAVKYSKTIVITGGEPLTWDMTELTGSLKKKGCDIHIETSGAY 115

Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVF---PQVNVSPENYIGF-DFERFSLQP 175
           +     DWIC+SPK      D       ELK++      +  + E      +     LQP
Sbjct: 116 DLTGTWDWICLSPKKIKLPKDKIYPVANELKVIVFNKHDLKFAEEQAAKVGEKCVLYLQP 175

Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +    EE   L + Y   NPKW++S+QTHK++ I
Sbjct: 176 -EWSKREEMIPLIVDYVMANPKWKVSLQTHKYLNI 209


>gi|126662368|ref|ZP_01733367.1| hypothetical protein FBBAL38_03415 [Flavobacteria bacterium BAL38]
 gi|126625747|gb|EAZ96436.1| hypothetical protein FBBAL38_03415 [Flavobacteria bacterium BAL38]
          Length = 210

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 62/216 (28%), Positives = 92/216 (42%), Gaps = 27/216 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           ++  + E F T+QGEG H G  A F R  GC++            C +CD     ++ + 
Sbjct: 14  EMLPLMEEFYTIQGEGYHTGTAAYFIRIGGCDV-----------GCHWCD-----VKESW 57

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
               +     D+I       +K     V+TGGEPL      L   L ++   + +ET+G 
Sbjct: 58  NAELHPPTNTDIIVS---NAKKYADTVVVTGGEPLTWDMTLLTSKLKEQNLRVHIETSGA 114

Query: 122 IEPPQGIDWICVSPKAG---CDLKIKGGQELKLVF---PQVNVSPENYIGFDFERF-SLQ 174
            E     DW C+SPK              ELK++         + E     +      LQ
Sbjct: 115 YEVTGTWDWFCLSPKKNKLPVQSAYDIANELKVIIYNKHDFIFAEEQAAKVNPNAILFLQ 174

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P +    EE T L + Y   NPKWR+S+QTHK++ I
Sbjct: 175 P-EWSKKEEMTPLIVDYVMNNPKWRVSLQTHKYLNI 209


>gi|325103801|ref|YP_004273455.1| Radical SAM domain protein [Pedobacter saltans DSM 12145]
 gi|324972649|gb|ADY51633.1| Radical SAM domain protein [Pedobacter saltans DSM 12145]
          Length = 207

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 63/216 (29%), Positives = 97/216 (44%), Gaps = 26/216 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
            +  + E F T+QGEG + G+ A F R  GC++            C +CD     ++ + 
Sbjct: 10  SMLPLMEEFYTIQGEGFNTGKAAYFIRLGGCDV-----------GCHWCD-----VKESW 53

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
               +    AD I E     +  G+  V+TGGEPLL     L   L ++G    +ET+G 
Sbjct: 54  DAELHPLTSADKIVEN--AEKYPGKAVVITGGEPLLYNLDYLTAKLKEKGILTFIETSGA 111

Query: 122 IEPPQGIDWICVSPKA---GCDLKIKGGQELK-LVFPQVNVSPENYIGF---DFERFSLQ 174
                  DW+C+SPK          +   ELK +VF + +            D  +  LQ
Sbjct: 112 YPISGSWDWVCLSPKKFKSPSPNIAQHADELKIIVFNKSDFEWAEAHARTVGDKCKLYLQ 171

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P +    ++   L I Y  +NPKW +S+QTHK++ I
Sbjct: 172 P-EWSKSQDMLPLIIEYVKENPKWEISLQTHKYLNI 206


>gi|89890614|ref|ZP_01202124.1| organic radical activating enzyme [Flavobacteria bacterium BBFL7]
 gi|89517529|gb|EAS20186.1| organic radical activating enzyme [Flavobacteria bacterium BBFL7]
          Length = 219

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 27/216 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
            +  + E F T+QGEG H G+ A F R  GC++            C +CD      +   
Sbjct: 23  MMLPLMEEFYTIQGEGSHTGKAAYFIRVGGCDV-----------GCHWCDVK----ESWD 67

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
             ++    +  ++        K  +  V+TGGEPL     PL   L + G ++ +ET+G 
Sbjct: 68  QEKHPPTAVEAIVA----NAAKYSKTIVVTGGEPLTWDMGPLTTGLKEEGMQVHIETSGA 123

Query: 122 IEPPQGIDWICVSP---KAGCDLKIKGGQELKLV----FPQVNVSPENYIGFDFERFSLQ 174
                  DWIC+SP   K       +   ELK++            E        +  LQ
Sbjct: 124 YPLSGTWDWICLSPKKMKMPLPEVYEAAHELKVIVFNKHDFAFAKAEAEKVSSNCKLYLQ 183

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P +    E+   L   +  +NP+W +S+QTHK++ I
Sbjct: 184 P-EWSVREKMIPLITEFVMENPEWHVSLQTHKYLNI 218


>gi|86132652|ref|ZP_01051245.1| radical SAM superfamily protein [Dokdonia donghaensis MED134]
 gi|85816894|gb|EAQ38079.1| radical SAM superfamily protein [Dokdonia donghaensis MED134]
          Length = 213

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 96/216 (44%), Gaps = 27/216 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           ++  + E F T+QGEG H G  A F R  GC++            C +CD          
Sbjct: 17  EMLPLMEEFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCDVKESW-DAAI 64

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
               N + +A+          K     V+TGGEPL+    PL + L   G    +ET+G 
Sbjct: 65  HPPTNANTIAE-------NAAKYSDTIVVTGGEPLMWDMNPLTKKLKSLGLTTHIETSGA 117

Query: 122 IEPPQGIDWICVSPKAGCDLK---IKGGQELKLVF---PQVNVSPENYIGF-DFERFSLQ 174
            E     DWIC+SPK     K   ++   ELK++       + + ++     +     LQ
Sbjct: 118 YELSGDWDWICLSPKKRMLPKASVLEKANELKVIIFNKSDFDFAEKHATQVGEDCILYLQ 177

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P +    ++   L + Y  +NPKW++S+QTHK++ I
Sbjct: 178 P-EWSVRDKMVPLIVDYVMKNPKWKVSLQTHKYLNI 212


>gi|262169329|ref|ZP_06037021.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae RC27]
 gi|262022142|gb|EEY40851.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae RC27]
 gi|327484035|gb|AEA78442.1| Queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae LMA3894-4]
          Length = 216

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 59/229 (25%), Positives = 88/229 (38%), Gaps = 41/229 (17%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ---------- 58
           +F T+QGEG   G  AVF R  GC +            C +CDT                
Sbjct: 1   MFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSDQTSFSQ 49

Query: 59  ---GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
               T          A  + +++     + ++ V+TGGEP +     L QA    G    
Sbjct: 50  ILLKTNDAPTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQ 109

Query: 116 VETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSPENYIGF 166
           +ET+GT E       W+ VSPK     K+           E+K  V  + ++   + +  
Sbjct: 110 IETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLA 169

Query: 167 DFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             +       +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 170 RAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215


>gi|91215960|ref|ZP_01252929.1| hypothetical protein P700755_15536 [Psychroflexus torquis ATCC
           700755]
 gi|91185937|gb|EAS72311.1| hypothetical protein P700755_15536 [Psychroflexus torquis ATCC
           700755]
          Length = 210

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 95/220 (43%), Gaps = 37/220 (16%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + E F T+QGEG H G  A F R  GC++            C +CD      +    
Sbjct: 15  MLPLMEEFYTIQGEGYHTGTAAYFIRIGGCDV-----------GCHWCDVK----ESWDP 59

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
            R+   ++  +IE      +K     V+TGGEPL      L Q L      I +ET+G  
Sbjct: 60  ERHPPTRIGSIIE----NAKKYSNTIVITGGEPLTWDMSMLTQGLKDNQLSIHIETSGAY 115

Query: 123 EPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVNVSPENYIGFDFER--------- 170
           +     DWIC+SPK     K        ELK++     +  ++   F  E          
Sbjct: 116 DLTGVWDWICLSPKKNKLPKPEIYPKVDELKVI-----IFNKHDFKFAEEHASQVGEDCE 170

Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             LQP +    E+ T   + Y  ++PKWR+S+QTHK++ I
Sbjct: 171 LFLQP-EWSVREKMTPQIVEYVMKHPKWRISLQTHKYLNI 209


>gi|332170651|gb|AEE19906.1| Radical SAM domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 213

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 95/216 (43%), Gaps = 27/216 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           ++  + E F T+QGEG H G  A F R  GC++            C +CD          
Sbjct: 17  EMLPLMEEFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCDVKESW-DAAI 64

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
               N + +A+          K     V+TGGEPL+    PL   L   G    +ET+G 
Sbjct: 65  HPPTNANTIAE-------NAAKYSDTIVVTGGEPLMWDMNPLTHKLKSLGLTTHIETSGA 117

Query: 122 IEPPQGIDWICVSPKAGCDLK---IKGGQELKLVF---PQVNVSPENYIGF-DFERFSLQ 174
            E     DWIC+SPK     K   ++   ELK++       + + ++     +     LQ
Sbjct: 118 YELSGEWDWICLSPKKRMLPKASVLEKANELKVIIFNKSDFDFAEKHAAQVGEDCILYLQ 177

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P +    ++   L + Y  +NPKW++S+QTHK++ I
Sbjct: 178 P-EWSVRDKMVPLIVDYVMKNPKWKVSLQTHKYLNI 212


>gi|237809236|ref|YP_002893676.1| radical activating enzyme [Tolumonas auensis DSM 9187]
 gi|237501497|gb|ACQ94090.1| radical activating enzyme [Tolumonas auensis DSM 9187]
          Length = 225

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 88/235 (37%), Gaps = 42/235 (17%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y I EIF ++QGEG  +G  A+F R  GC              C +CDT           
Sbjct: 6   YPINEIFQSIQGEGFFSGVPAIFVRLQGC-----------KVGCSWCDTKHSWELDADNL 54

Query: 57  -------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
                          ++     +++   +   E   R+ V+TGGEP     + L Q L  
Sbjct: 55  IPVRQLFTDKKPKAGWSWLSPEEIL-SCFSAEEYTARHVVITGGEPCEYDLMVLSQTLIA 113

Query: 110 RGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKLVFP---QVNV 158
            G+ + +ET+GT         W+ VSPK             +    E+K        +  
Sbjct: 114 HGYRVQIETSGTQPVQADDACWVTVSPKINMAGGYDVLPDVLLRANEIKHPVATAKHIAQ 173

Query: 159 SPENYIGFD--FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                 G D   +   LQP+        T LA+  C Q   WRLSVQ HK++ I 
Sbjct: 174 LDALLAGIDTSEKVICLQPISQK--SRATELAMKICIQR-NWRLSVQLHKYLDIE 225


>gi|328950182|ref|YP_004367517.1| Radical SAM domain protein [Marinithermus hydrothermalis DSM 14884]
 gi|328450506|gb|AEB11407.1| Radical SAM domain protein [Marinithermus hydrothermalis DSM 14884]
          Length = 199

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 65/217 (29%), Positives = 94/217 (43%), Gaps = 31/217 (14%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y + E F ++QGEG   G  A F R +GC++            C FCDT     +     
Sbjct: 5   YPVVETFHSVQGEGHWTGTSAFFIRLAGCDV-----------GCWFCDTK----ESWDMS 49

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           ++    +  L+ E            V+TGGEPL+    PL +AL   G    +ET+G   
Sbjct: 50  QHPWRSVDALVAEAQAAS---PAIVVVTGGEPLMHDLTPLSRALRAAGLRAHLETSGAHP 106

Query: 124 PPQGIDWICVSPK---AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF------SLQ 174
                DW+ +SPK              ELK+V   VN S   +      R        LQ
Sbjct: 107 FSGAWDWVTLSPKKFRPPHPSVYPHVHELKVVV--VNQSDLAWAETHAARVPPTALKYLQ 164

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           P      E++  L + Y  Q+P+WR+S+QTHK +G+R
Sbjct: 165 PE--WSTEKSRQLILEYVLQHPEWRVSLQTHKVLGVR 199


>gi|218438303|ref|YP_002376632.1| radical SAM protein [Cyanothece sp. PCC 7424]
 gi|218171031|gb|ACK69764.1| Radical SAM domain protein [Cyanothece sp. PCC 7424]
          Length = 210

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 90/216 (41%), Gaps = 27/216 (12%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
            Y I E F ++QGEG   G  A F R  GC+++           C +CD         + 
Sbjct: 15  TYPIVETFHSVQGEGAWTGVSAFFIRLGGCDVY-----------CPWCDQKESW-NAKRH 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              +VD LA                 ++TGGEPL+    PL   L K G ++ +ET+G+ 
Sbjct: 63  PHQSVDTLAQA------AKMANPAIVIITGGEPLMHDLDPLTTELKKLGLQVHLETSGSH 116

Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQ---VNVSPENYIGFDFERF-SLQP 175
                 DW+  SPK      D       ELK+V      ++++              LQP
Sbjct: 117 PFSGNFDWVTFSPKPYKKPHDSIYNYVNELKVVVANEEDLHMAEVQAAKLSLTVIKYLQP 176

Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                   +  L   +  ++P+WR+S+QTHKF+ +R
Sbjct: 177 EWNT--PNSKELIFDFVLKHPQWRISLQTHKFLNVR 210


>gi|260778537|ref|ZP_05887429.1| queuosine Biosynthesis QueE Radical SAM [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260604701|gb|EEX30996.1| queuosine Biosynthesis QueE Radical SAM [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 216

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 61/229 (26%), Positives = 88/229 (38%), Gaps = 41/229 (17%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68
           +F T+QGEG   G  +VF R   C +            C +CDT        +  R   +
Sbjct: 1   MFETIQGEGVFTGVPSVFVRLQICPV-----------GCAWCDTKQTWDATPQDERPLAE 49

Query: 69  QLADL-------------IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
            LA               I EQ+     + ++ V+TGGEP +    PL +A    G    
Sbjct: 50  VLAKTEDSPTWCSVSGGDIIEQYRQQGYQAKHIVITGGEPCIYDLRPLTEAFEAIGCRCQ 109

Query: 116 VETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL------VFPQVNVSPE 161
           +ET+GT         W+ VSPK     K+           E+K          Q++   E
Sbjct: 110 IETSGTSPILASENTWVTVSPKVAMKGKLPVLDCALLRANEIKHPVATDKDIEQLDALIE 169

Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                +    +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 170 RAGVPESTTIALQPISQK--PRATQLCIDTCIAR-NWRLSIQTHKYLSI 215


>gi|119944858|ref|YP_942538.1| radical SAM domain-containing protein [Psychromonas ingrahamii 37]
 gi|119863462|gb|ABM02939.1| Radical SAM domain protein [Psychromonas ingrahamii 37]
          Length = 246

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 93/238 (39%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y + E+F T+QGEG + G  A+F R  GC++            C +CDT           
Sbjct: 26  YKVNELFQTIQGEGFNTGVPAIFLRLQGCDV-----------GCAWCDTKHTWEINPDKQ 74

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      + T+    N  ++   I+             V+TGGEP L     L   
Sbjct: 75  TELILLTGSSNESTRWANVNAREIVAEIKRLG----YSANLVVITGGEPCLADLRELTTV 130

Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL------V 152
           L++  F+  +ET+GT         W+ +SPK             ++   E+K        
Sbjct: 131 LHEFDFKTQIETSGTYPVLVAPPTWVTLSPKVNMRAGKVVLQSALERADEIKHPVGTEKD 190

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             Q++   EN    + +   LQP+      + T L    C +   WRLSVQ HK++GI
Sbjct: 191 IEQLDALLENLKSIEDKVICLQPISQKV--KATLLCSQVCIER-NWRLSVQMHKYLGI 245


>gi|116071889|ref|ZP_01469157.1| possible organic radical activating enzyme [Synechococcus sp.
           BL107]
 gi|116065512|gb|EAU71270.1| possible organic radical activating enzyme [Synechococcus sp.
           BL107]
          Length = 205

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 67/218 (30%), Positives = 101/218 (46%), Gaps = 25/218 (11%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   + E F +LQGEG H GR A F R +GCN+            C +CDT         
Sbjct: 5   RSIPVVETFHSLQGEGHHCGRSAFFIRLAGCNV-----------GCAWCDTKHSW----P 49

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNG 120
              +    +  L  +     +    + V+TGGEPL     PL  AL++  G  I +ET+G
Sbjct: 50  MASHAKQDVDGLARQARQAKDAGAAFVVITGGEPLHHNLQPLTDALDRICGLPIHLETSG 109

Query: 121 TIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVF-PQVNVSPENYIGFD---FERFSL 173
             +     DW+ +SPK     +   +    ELK+V     +VS  + +  D        +
Sbjct: 110 VDQLSGRFDWVTLSPKRHRPPQQALLSRCDELKVVVLDTDDVSFAHAMANDTSTATHLLV 169

Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           QP+     E   +LAI +  Q+P+WRLS+Q+HKF+ IR
Sbjct: 170 QPV--WDSETAQDLAIHHVQQHPRWRLSLQSHKFLQIR 205


>gi|67924094|ref|ZP_00517541.1| Radical SAM [Crocosphaera watsonii WH 8501]
 gi|67854055|gb|EAM49367.1| Radical SAM [Crocosphaera watsonii WH 8501]
          Length = 213

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 64/216 (29%), Positives = 96/216 (44%), Gaps = 27/216 (12%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
            Y I E F +LQGEG   G  A F R +GC++            C +CD      +    
Sbjct: 18  TYPIVETFHSLQGEGTWTGVNAFFIRLAGCDV-----------HCPWCDQK----ESWTS 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
            +Y    +  ++ E  ++        V+TGGEPL+    PL +AL K G  + +ET+G+ 
Sbjct: 63  KKYPQQSI-KILAE--VSKMANPFMVVITGGEPLMYDLFPLTKALKKLGLRVHLETSGSH 119

Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQVNV---SPENYIGFDFERF-SLQP 175
                 DW+  SPK      +       ELK+V         + E       E    LQP
Sbjct: 120 SFTGQFDWVTFSPKPFKLPHESIYSQVNELKIVIANQEDLHWAEEEAKKVPREAIKYLQP 179

Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                  E+ +L   Y  ++P+WR+S+QTHKF+G+R
Sbjct: 180 EWNT--PESQSLIFDYILKHPQWRMSLQTHKFLGVR 213


>gi|126657071|ref|ZP_01728242.1| hypothetical protein CY0110_28234 [Cyanothece sp. CCY0110]
 gi|126621614|gb|EAZ92324.1| hypothetical protein CY0110_28234 [Cyanothece sp. CCY0110]
          Length = 213

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 62/218 (28%), Positives = 93/218 (42%), Gaps = 27/218 (12%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +K Y I E F +LQGEG   G  A F R +GC++            C +CD      +  
Sbjct: 16  LKTYPIVERFHSLQGEGTWTGMSAFFIRLAGCDV-----------HCPWCDQK----ESW 60

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
               Y    +  L +             V+TGGEPL+    PL + L + G  + +ET+G
Sbjct: 61  NSNLYPQQSIKTLTDAAKAAN---PAMVVITGGEPLIHDLFPLTKGLKQLGLRVHLETSG 117

Query: 121 TIEPPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQ---VNVSPENYIGFDFERF-SL 173
                   DWI +SP   K   +       ELK++      +N + +       +    L
Sbjct: 118 AYPLTGEFDWITLSPKPFKVPHETVYSQVNELKVIIANEADLNWAEKQEKKVPSQTIKYL 177

Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           QP       E+ +L   Y   NP+WR+S+Q HKF+G+R
Sbjct: 178 QPE--WNSPESKSLIFDYILSNPQWRMSLQIHKFLGVR 213


>gi|315126983|ref|YP_004068986.1| queC protein [Pseudoalteromonas sp. SM9913]
 gi|315015497|gb|ADT68835.1| queC protein [Pseudoalteromonas sp. SM9913]
          Length = 215

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 89/228 (39%), Gaps = 40/228 (17%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---------QG 59
           +F T+QGE    G  ++F R  GC +            C +CDT                
Sbjct: 1   MFETIQGEASFTGTPSIFLRLQGCPV-----------GCSWCDTKQTWDVDNVYKVSLDD 49

Query: 60  TKGGRYNVDQLADL----IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
           T   + + D  A+     + E + +     ++ V+TGGEP +    P+   L+  GF   
Sbjct: 50  TVEKKADSDHWAEASAAQVLELFKSRGYTAKHVVITGGEPCMYDLNPVCNLLHDHGFSTQ 109

Query: 116 VETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQVNVSPENYIGF- 166
           +ET+GT E       W+ VSPK             ++   E+K          E    F 
Sbjct: 110 IETSGTFEILAPAQTWVTVSPKINMRGGYKVLSSAMQRADEIKHPVAMQKHVEELEELFT 169

Query: 167 ----DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               + +   LQP+        T LAI  C     WRLS+Q HK++GI
Sbjct: 170 ATGVNPKLVYLQPISQKTS--ATKLAIDTCIAK-NWRLSIQVHKYLGI 214


>gi|312887506|ref|ZP_07747102.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311299994|gb|EFQ77067.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 207

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 63/216 (29%), Positives = 95/216 (43%), Gaps = 26/216 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
            L  + E F T+QGEG + G+ A F R  GC++            C +CD        + 
Sbjct: 10  TLLPLMEEFYTIQGEGYNTGKAAYFIRLGGCDV-----------GCHWCDVKESW-DASI 57

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
                 D + D         +  G+  V+TGGEPL+     L   L ++G +  +ET+G 
Sbjct: 58  HPLTPSDTIVD------NAVKYPGKAVVVTGGEPLIYNLDYLTAQLQQKGIKTFIETSGA 111

Query: 122 IEPPQGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVS-PENYIGF--DFERFSLQ 174
                  DWIC+SP   KA          ELK +VF + + +  E Y        +  LQ
Sbjct: 112 YPLSGSWDWICLSPKKFKAPSASVAPYAHELKVIVFNKSDFAWAEQYAALVSPGCKLYLQ 171

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P +    +E   L + Y   NP+W +S+QTHK++ I
Sbjct: 172 P-EWSKSKEMIPLIVDYVMNNPQWEISLQTHKYLNI 206


>gi|225011685|ref|ZP_03702123.1| Radical SAM domain protein [Flavobacteria bacterium MS024-2A]
 gi|225004188|gb|EEG42160.1| Radical SAM domain protein [Flavobacteria bacterium MS024-2A]
          Length = 210

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 64/214 (29%), Positives = 95/214 (44%), Gaps = 27/214 (12%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F TLQGEG H G  A F R  GC++            C +CD      +     
Sbjct: 16  LPLMEAFYTLQGEGYHKGSAAYFIRIGGCDV-----------GCHWCDVK----ESWNAD 60

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
            +   Q+  ++ E     +K     V+TGGEPL+    PL  AL+K   +I +ET+G   
Sbjct: 61  LHPPTQIDSIVAE----AKKYSDTVVVTGGEPLMWKMDPLTDALHKEDMQIHIETSGAYS 116

Query: 124 PPQGIDWICVSPKAGCDLKIKG---GQELKLVFPQVN---VSPENYIGFDFE-RFSLQPM 176
                DW C+SPK      ++      ELK++    +    + E       E +  LQP 
Sbjct: 117 LSGSWDWFCLSPKKNKLPIVEAYAVADELKMIVYNKDDFRFAEEQAAKVGQECKLFLQP- 175

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    E    L + Y   NPKW++S+QTHK++ I
Sbjct: 176 EWSKRETVMPLLVDYVLGNPKWKVSLQTHKYLNI 209


>gi|33864484|ref|NP_896044.1| putative organic radical activating protein [Prochlorococcus
           marinus str. MIT 9313]
 gi|33641264|emb|CAE22394.1| possible organic radical activating enzyme [Prochlorococcus marinus
           str. MIT 9313]
          Length = 226

 Score =  211 bits (537), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 95/239 (39%), Gaps = 48/239 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F +LQGEG H GR A F R +GC++            C +CDT           
Sbjct: 5   LPVVETFHSLQGEGAHVGRSAFFIRLAGCDV-----------GCSWCDTKHSW----NSR 49

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-------GFEIAV 116
            +    L  L EE     +    + VLTGGEPL     PL +AL++           I +
Sbjct: 50  NHPQITLEQLAEETATAAKDGAAFVVLTGGEPLQHNIAPLCEALHRATETNHGGPLAIHL 109

Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVNVS--PENYIGFDFER- 170
           ET+G  +      WI +SPK     +   +    ELK+V  + +     E+      E  
Sbjct: 110 ETSGVNQLSGVPTWITLSPKRHAPPRTDLLAACHELKVVVHETDDLNFAEDMAKAALEAR 169

Query: 171 ------------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                               LQP  G        LA  +   +P WRLS+QTHK++GIR
Sbjct: 170 KNDNASQSRLSNTSKEPLLFLQP--GWKTTRGQQLAFEHVQSHPHWRLSMQTHKWLGIR 226


>gi|255531962|ref|YP_003092334.1| Radical SAM domain-containing protein [Pedobacter heparinus DSM
           2366]
 gi|255344946|gb|ACU04272.1| Radical SAM domain protein [Pedobacter heparinus DSM 2366]
          Length = 207

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 65/216 (30%), Positives = 91/216 (42%), Gaps = 26/216 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
            L  + E F T+QGEG + G+ A F R  GC++            C +CD          
Sbjct: 10  TLLPLMEEFYTIQGEGFNTGKAAYFIRLGGCDV-----------GCHWCDVKESW-DAEL 57

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
                 D +    E         G+  V+TGGEPL+     L + L ++G    +ET+G 
Sbjct: 58  HPLTPADAIVAKAES------YPGKAVVITGGEPLIYNLDYLTRRLREKGILTFIETSGA 111

Query: 122 IEPPQGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVSPENYIGFDFE---RFSLQ 174
                  DWIC+SP   KA          ELK +VF + +               +  LQ
Sbjct: 112 YPLSGDWDWICLSPKKFKAPRPDITPYANELKVIVFNKSDFEWAEKYAETVSANCKLYLQ 171

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P +    +E T L I Y   NPKW +S+QTHKF+ I
Sbjct: 172 P-EWSKSKEITPLIIDYVMANPKWEISLQTHKFLNI 206


>gi|313206128|ref|YP_004045305.1| radical sam domain protein [Riemerella anatipestifer DSM 15868]
 gi|312445444|gb|ADQ81799.1| Radical SAM domain protein [Riemerella anatipestifer DSM 15868]
 gi|315022935|gb|EFT35958.1| Queuosine Biosynthesis QueE Radical SAM [Riemerella anatipestifer
           RA-YM]
          Length = 209

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 90/213 (42%), Gaps = 27/213 (12%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + E F T+QGEG + G+ A F R  GC++            C +CD             
Sbjct: 16  PVMEHFYTIQGEGAYTGKAAYFIRLGGCDV-----------GCHWCDVKESW-DPNLHPL 63

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
            + +++A +            +  VLTGGEPL+     L + L   G  I +ET+G  E 
Sbjct: 64  MDAEEVAQI-------AANHSKTIVLTGGEPLMWNLEILTKKLKDLGCTIHIETSGAYEI 116

Query: 125 PQGIDWICVSPKAGCDLK---IKGGQELKLVF---PQVNVSPENYIGF-DFERFSLQPMD 177
              IDW+C+SPK     K        ELK++         + E         +F LQ  +
Sbjct: 117 SGHIDWVCLSPKKTGLPKESIYAKANELKVIIFNNHDFKFAEEQASKVSQNCKFYLQ-SE 175

Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               +E       Y  +NPKW+ SVQTHK++ I
Sbjct: 176 WSKRDEMYPKITDYILENPKWQASVQTHKYLNI 208


>gi|312129858|ref|YP_003997198.1| radical sam domain protein [Leadbetterella byssophila DSM 17132]
 gi|311906404|gb|ADQ16845.1| Radical SAM domain protein [Leadbetterella byssophila DSM 17132]
          Length = 202

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 62/214 (28%), Positives = 93/214 (43%), Gaps = 26/214 (12%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F TLQGEG H+G+ A F R  GC++            C +CD            
Sbjct: 7   LPVMESFYTLQGEGFHSGKAAYFIRLGGCDV-----------GCVWCDVKESW-DAEAHP 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           ++ V+ + +         E  GR  V+TGGEPL+     L   L ++GF+  +ET+G   
Sbjct: 55  QFRVEDIVN------GALEYPGRLAVITGGEPLMYDLNELTAELKQKGFQTNIETSGAHP 108

Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVSPENYIGF---DFERFSLQPM 176
                DWIC SP   KA  +       ELK +V+   +               +  LQ +
Sbjct: 109 LSGDWDWICFSPKKFKAPLEEFYAVANELKVIVYNSSDFDFAEIHAAKVNPDCKLFLQ-V 167

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    E      + Y   NP+WR+S+QTHK++ I
Sbjct: 168 EWDRRERMMPSIVEYVKANPQWRVSIQTHKYMNI 201


>gi|295135621|ref|YP_003586297.1| radical SAM superfamily protein [Zunongwangia profunda SM-A87]
 gi|294983636|gb|ADF54101.1| radical SAM superfamily protein [Zunongwangia profunda SM-A87]
          Length = 223

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 62/215 (28%), Positives = 95/215 (44%), Gaps = 27/215 (12%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + E F T+QGEG H G  A F R  GC++            C +CD      +    
Sbjct: 28  MLPLMEEFYTIQGEGYHKGTAAYFIRIGGCDV-----------GCHWCDVK----ESWNA 72

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           G +    + +++E       K  +  V+TGGEPL      L  +L K+G +I +ET+G  
Sbjct: 73  GLHPPTHVGEIVE----NALKYSKTIVITGGEPLTWDMTTLTDSLKKQGCQIHIETSGAY 128

Query: 123 EPPQGIDWICVSPKAGC---DLKIKGGQELKLVF---PQVNVSPENYIGF-DFERFSLQP 175
                 DWIC+SPK              ELK++         + E      +     LQP
Sbjct: 129 PLTGIWDWICLSPKKIKLPEPEIYPVANELKVIIFNKHDFKFAEEQAAQVGEHCILYLQP 188

Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +    E+   L + Y  +NPKW++S+QTHK++ I
Sbjct: 189 -EWSNREKMIPLIVDYVMRNPKWKVSLQTHKYLNI 222


>gi|78780168|ref|YP_398280.1| putative organic radical activating protein [Prochlorococcus
           marinus str. MIT 9312]
 gi|78713667|gb|ABB50844.1| organic radical activating enzyme-like protein [Prochlorococcus
           marinus str. MIT 9312]
          Length = 225

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 107/242 (44%), Gaps = 48/242 (19%)

Query: 1   MKL---YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI 57
           MK+     + E F +LQGEG HAG+ A F R +GC              C +CDT     
Sbjct: 1   MKMTNFLPLVEQFHSLQGEGYHAGKSAFFVRLAGC-----------EVGCSWCDTKHSWD 49

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN-------KR 110
           +     +Y    +  +I+   I  E+   +CV+TGGEPL        +A+        + 
Sbjct: 50  E----NKYPSVSIEKIIDRIKIAREQGASFCVITGGEPLQHNLDKFCKAIKQMKMGKEQN 105

Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQ-------VNVSP 160
             +I +ET+G        DWI +SPK     K   +K   E+K++  +       + +  
Sbjct: 106 SMKIHIETSGVNSISGSYDWITLSPKRHSPPKNYFLKNCNEIKIIINEKEDIEFAIQIKK 165

Query: 161 ENYIGFDFER-----------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
           E    ++F +           F LQP      ++  +LAI +   NP W+LS+QTHK++ 
Sbjct: 166 EILKQYEFSKIEDSLKKEDKIFYLQPA--WNNKDGFSLAIDFVKNNPDWKLSLQTHKYLK 223

Query: 210 IR 211
           I+
Sbjct: 224 IK 225


>gi|325287093|ref|YP_004262883.1| Radical SAM domain-containing protein [Cellulophaga lytica DSM
           7489]
 gi|324322547|gb|ADY30012.1| Radical SAM domain protein [Cellulophaga lytica DSM 7489]
          Length = 215

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 58/216 (26%), Positives = 95/216 (43%), Gaps = 27/216 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           ++  + E F T+QGEG H G  A F R  GC++            C +CD      +   
Sbjct: 19  EMLPLMEEFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCDVK----ESWN 63

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
              +    +  ++        K     V+TGGEPL     PL +AL  +  +  +ET+G 
Sbjct: 64  AATHPPTTIDAIVN----NAAKYSNTIVVTGGEPLTWNMAPLTEALKAKNLQTHIETSGA 119

Query: 122 IEPPQGIDWICVSPKAGC---DLKIKGGQELKLVFPQVN---VSPENYIGFDFERF-SLQ 174
                  DWIC+SPK       +      ELK++    N    + E     + +    LQ
Sbjct: 120 YTLTGIWDWICLSPKKNKLPQGIIYDKADELKMIIYNKNDFKFAEEQAAKVNKDCILYLQ 179

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P +    ++ T L + +  +NP+W++S+QTHK++ I
Sbjct: 180 P-EWSVKDKMTPLIVDFVMKNPQWKVSLQTHKYLNI 214


>gi|163800817|ref|ZP_02194717.1| aconitate hydratase [Vibrio sp. AND4]
 gi|159175166|gb|EDP59963.1| aconitate hydratase [Vibrio sp. AND4]
          Length = 216

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 87/230 (37%), Gaps = 43/230 (18%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR---- 64
           +F T+QGEG   G  AVF R   C +            C +CDT        +  R    
Sbjct: 1   MFETIQGEGVFTGVPAVFVRLQECPV-----------GCSWCDTKQTWYAKEEDQRQIGD 49

Query: 65  ----------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
                     +      D++ E    G    ++ V+TGGEP +     L  A  +   + 
Sbjct: 50  ILVKTEDSPTWCFASAQDIVVEYKKQGFN-AKHIVITGGEPCIYDLRELTAAFEEMDCQC 108

Query: 115 AVETNGTIEPPQG-IDWICVSPKAGCDLKIK-------GGQELKL------VFPQVNVSP 160
            +ET+GT E       W+ VSPK     K+           E+K          Q++V  
Sbjct: 109 QIETSGTSEVVASESTWVTVSPKVAMKGKLPILKSALGRANEIKHPVGTQKDIDQLDVLL 168

Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +    +    +LQP+        T L I  C     WRLSVQTHK++ I
Sbjct: 169 ASAEVGESTVIALQPISQK--PRATQLCIDTCIAR-NWRLSVQTHKYLSI 215


>gi|156974667|ref|YP_001445574.1| hypothetical protein VIBHAR_02385 [Vibrio harveyi ATCC BAA-1116]
 gi|156526261|gb|ABU71347.1| hypothetical protein VIBHAR_02385 [Vibrio harveyi ATCC BAA-1116]
          Length = 216

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 87/230 (37%), Gaps = 43/230 (18%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR---- 64
           +F T+QGEG   G  AVF R   C +            C +CDT        K  R    
Sbjct: 1   MFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWYAEEKDQRQIGD 49

Query: 65  ----------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
                     +      D++ E    G    ++ V+TGGEP +     L  A  +   + 
Sbjct: 50  ILVKTEDSPTWCFASAEDIVAEYKKQGFN-AKHVVITGGEPCIYDLRALTAAFEEMDCQC 108

Query: 115 AVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL------VFPQVNVSP 160
            +ET+GT E       W+ VSPK     K+           E+K          Q++V  
Sbjct: 109 QIETSGTSEVVTSESTWVTVSPKVAMKGKLPVLKSALERANEIKHPVGTQKDIDQLDVLL 168

Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +    +    +LQP+        T L I  C     WRLSVQTHK++ I
Sbjct: 169 ASAEIGEKTVIALQPISQK--PRATQLCIDTCVAR-NWRLSVQTHKYLSI 215


>gi|255534291|ref|YP_003094662.1| Queuosine Biosynthesis QueE Radical SAM [Flavobacteriaceae
           bacterium 3519-10]
 gi|255340487|gb|ACU06600.1| Queuosine Biosynthesis QueE Radical SAM [Flavobacteriaceae
           bacterium 3519-10]
          Length = 210

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 64/216 (29%), Positives = 91/216 (42%), Gaps = 27/216 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           ++  + E F TLQGEG H G+ A F R  GC++            C +CD        T 
Sbjct: 14  EMLPVMEHFYTLQGEGAHTGKAAYFIRLGGCDV-----------GCHWCDVKESW-DPTL 61

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
               +  Q+A+       T  K  +  VLTGGEPL+     L   L + G  I +ET+G 
Sbjct: 62  HPLMSAVQIAE-------TAAKHCKTIVLTGGEPLMWNLEILTSRLKELGCTIHIETSGA 114

Query: 122 IEPPQGIDWICVSPKA---GCDLKIKGGQELKLVF---PQVNVSPENYIGF-DFERFSLQ 174
                 +DWI +SPK      D       ELK++      +  + E         R  LQ
Sbjct: 115 YPMSGHLDWITLSPKKTGLPKDQIYAKAHELKVIVFNNNDLKFAAEQAAKVSPTCRLYLQ 174

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             +    EE       +   NP+W+ SVQTHK++ I
Sbjct: 175 -SEWSKREEIYPKITDFILANPEWQASVQTHKYLNI 209


>gi|123967114|ref|YP_001012195.1| putative organic radical activating protein [Prochlorococcus
           marinus str. MIT 9515]
 gi|123201480|gb|ABM73088.1| possible organic radical activating enzyme [Prochlorococcus marinus
           str. MIT 9515]
          Length = 223

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 45/236 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F +LQGEG H G+ A F R +GCN+            C +CDT     +     
Sbjct: 5   LPLVEKFHSLQGEGFHTGQSAFFIRLAGCNV-----------GCPWCDTKHSWDK----E 49

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-------GFEIAV 116
           ++ +  + ++I E     ++   + V+TGGEPL      L QA+N+          +I +
Sbjct: 50  KFPLISIQEIINEIKRARKQGASFLVITGGEPLHHNLDNLCQAINEETSTENQSPIKIHI 109

Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVF-PQVNVSPENYIGFDF---- 168
           ET+G        DWI +SPK     K   +K   ELK++   Q ++     I  +     
Sbjct: 110 ETSGVSNLSGSFDWITLSPKRHQPPKTYFLKNCNELKIIINDQKDIDFAIDIKQEIMNKY 169

Query: 169 -------------ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                        +++ LQP      ++  +L I +   NP+W LS+QTHK++ I+
Sbjct: 170 QNSSSTKNFYKLDKKYYLQPAWQ--NDDGFSLTIDFIKNNPEWNLSLQTHKYLKIK 223


>gi|300775377|ref|ZP_07085239.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Chryseobacterium gleum ATCC 35910]
 gi|300506117|gb|EFK37253.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Chryseobacterium gleum ATCC 35910]
          Length = 209

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 92/216 (42%), Gaps = 27/216 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           K+  + E F TLQGEG H G+ A F R  GC++            C +CD          
Sbjct: 13  KMLPVMEHFYTLQGEGAHTGKAAYFIRLGGCDV-----------GCHWCDVKESW-DPEL 60

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
               N +++A+       T  +  +  VLTGGEPL+     L   L + G  I +ET+G 
Sbjct: 61  HPLMNAEEIAE-------TAARHCKTIVLTGGEPLMWNLDILTSKLKELGCTIHIETSGA 113

Query: 122 IEPPQGIDWICVSPKAGCDLK---IKGGQELKLV---FPQVNVSPENYIGF-DFERFSLQ 174
                 +DWI +SPK     K    +   ELK++         + E      +  +  LQ
Sbjct: 114 YPMSGHLDWITLSPKKTGLPKEEIYQKANELKVIIFNHHDFTFAQEQAAKVSENCKLYLQ 173

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             +     +       +  ++P+W+ SVQTHK++ I
Sbjct: 174 -SEWSKRNDMYPKITDFILEHPEWQASVQTHKYLNI 208


>gi|255745752|ref|ZP_05419700.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholera CIRS 101]
 gi|262158970|ref|ZP_06030082.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae INDRE
           91/1]
 gi|255736827|gb|EET92224.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholera CIRS 101]
 gi|262029155|gb|EEY47807.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae INDRE
           91/1]
          Length = 216

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 87/229 (37%), Gaps = 41/229 (17%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ---------- 58
           +F  +QGEG   G  AVF R  GC +            C +CDT                
Sbjct: 1   MFEIIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSDQTSFSQ 49

Query: 59  ---GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
               T          A  + +++     + ++ V+TGGEP +     L QA    G    
Sbjct: 50  ILLKTNDAPTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQ 109

Query: 116 VETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSPENYIGF 166
           +ET+GT E       W+ VSPK     K+           E+K  V  + ++   + +  
Sbjct: 110 IETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLA 169

Query: 167 DFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             +       +LQP+        T L I  C     WRLS+QTHK++ I
Sbjct: 170 RAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215


>gi|313676966|ref|YP_004054962.1| radical sam domain protein [Marivirga tractuosa DSM 4126]
 gi|312943664|gb|ADR22854.1| Radical SAM domain protein [Marivirga tractuosa DSM 4126]
          Length = 207

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 102/214 (47%), Gaps = 26/214 (12%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F T+QGEG H+G+ A F R  GC++            C +CD            
Sbjct: 12  LPLMESFYTIQGEGFHSGKAAYFIRLGGCDV-----------GCVWCDVK----DSWDAD 56

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           ++ + ++ D++++ +   + E R  V+TGGEP +     L + L ++GF + VET+G   
Sbjct: 57  KWPLKKIDDIVDDAY---QYESRLAVITGGEPFMYDMHGLTKRLLQKGFHVNVETSGAHP 113

Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVSPENYIGFD---FERFSLQPM 176
               +DW+C+SP   KA  +       ELK ++F + +               +  LQP 
Sbjct: 114 FTGMVDWVCLSPKKFKAPLEHWYDRADELKIIIFNKSDFKWAEEHAEKVGSDCKLMLQP- 172

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    EE   L + Y  +NP W +S+QTHK++ I
Sbjct: 173 EWSKREEMMPLIVEYVKENPNWGISLQTHKYLQI 206


>gi|166365320|ref|YP_001657593.1| hypothetical protein MAE_25790 [Microcystis aeruginosa NIES-843]
 gi|166087693|dbj|BAG02401.1| hypothetical protein MAE_25790 [Microcystis aeruginosa NIES-843]
          Length = 205

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 62/218 (28%), Positives = 93/218 (42%), Gaps = 31/218 (14%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
            Y + E F ++QGEG   G  A F R  GC+++           C +CD      +    
Sbjct: 10  TYPVVETFHSVQGEGFWTGSNAFFLRLGGCDVY-----------CPWCDQK----ESWNA 54

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
            RY    L +L+E   +         V+TGGEPL+    PL + L  +G  + +ET+G  
Sbjct: 55  HRYPQQSLRELVE---MAKGANPAMVVITGGEPLMHNLDPLTKELKNQGLRVHLETSGAH 111

Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF------SL 173
                 DW+  SP   K           ELK+V         ++      +        L
Sbjct: 112 PFTGVFDWVTFSPKTYKMPDPSIYARVNELKIVVAHP--EDLDWASMQESKLSEGVIKYL 169

Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           QP       E+  L  +Y  ++P+WRLS+QTHKF+G+R
Sbjct: 170 QPEWNT--AESKELVFNYVLRHPQWRLSLQTHKFLGVR 205


>gi|228473183|ref|ZP_04057938.1| radical SAM domain protein [Capnocytophaga gingivalis ATCC 33624]
 gi|228275333|gb|EEK14125.1| radical SAM domain protein [Capnocytophaga gingivalis ATCC 33624]
          Length = 200

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 27/216 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
            +  + E F T+QGEG + G  A F R +GC++            C +CD        + 
Sbjct: 4   TILPLMEDFYTIQGEGFYRGTAAYFIRLAGCDV-----------GCHWCDVKESW-DASV 51

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
             R  ++++A              +  ++TGGEPL+    PL + L  +G    +ET+G 
Sbjct: 52  HPRVPIEEIAQR-------ALAHSKTIIITGGEPLMYNLQPLTELLKSKGARTHIETSGA 104

Query: 122 IEPPQGIDWICVSPKAG---CDLKIKGGQELKLV----FPQVNVSPENYIGFDFERFSLQ 174
                  DWIC+SPK          +   ELK++       +     + +        LQ
Sbjct: 105 HPLTGVWDWICLSPKKNKRPLPEVHQRASELKMIIYNHHDFLFAEEMSALTQPDCIRYLQ 164

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P +    E    L + Y  +NP+W++S+Q HK++ I
Sbjct: 165 P-EWSRRERMVPLIVDYVMENPQWKISLQMHKYLDI 199


>gi|159030634|emb|CAO88302.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 224

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 62/218 (28%), Positives = 94/218 (43%), Gaps = 31/218 (14%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
            Y + E F ++QGEG   G  A F R  GC+++           C +CD      +    
Sbjct: 29  TYPVVETFHSVQGEGFWTGSNAFFLRLGGCDVY-----------CPWCDQK----ESWNA 73

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
            RY    L +L+E   +  +      V+TGGEPL+    PL +    +G  + +ET+G  
Sbjct: 74  HRYPQKSLGELVE---MAKDANPAMVVITGGEPLMHNLAPLTEEFKNQGLRVHLETSGAH 130

Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF------SL 173
                 DW+  SP   K           ELK+V    N    ++      +        L
Sbjct: 131 PFTGVFDWVTFSPKTYKMPDPSIYARVNELKIVV--ANPEDLDWAAMQESKLSEGVIKYL 188

Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           QP       E+  L  +Y  ++P+WRLS+QTHKF+G+R
Sbjct: 189 QPEWNT--AESKELVFNYVLRHPQWRLSLQTHKFLGVR 224


>gi|298207940|ref|YP_003716119.1| hypothetical protein CA2559_06800 [Croceibacter atlanticus
           HTCC2559]
 gi|83850581|gb|EAP88449.1| hypothetical protein CA2559_06800 [Croceibacter atlanticus
           HTCC2559]
          Length = 210

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 27/216 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           K+  + E F T+QGEG H G  A F R  GC++            C +CD      +   
Sbjct: 14  KMLPLMEEFYTIQGEGYHKGTAAYFIRIGGCDV-----------GCHWCDVK----ESWD 58

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
             ++       ++ E      K  +  V+TGGEPL      L Q L   G +  +ET+G 
Sbjct: 59  AEKHPPTATERIVSE----AVKYSKTIVVTGGEPLTWDMTLLTQMLKAEGAQTHIETSGA 114

Query: 122 IEPPQGIDWICVSPKA---GCDLKIKGGQELKLVF---PQVNVSPENYIGFDFERF-SLQ 174
                  DWIC+SPK          +   ELK++      +  + E     + +    LQ
Sbjct: 115 YTLTGKWDWICLSPKKLKLPTKEVYEKANELKVIIFNKHDLKFAEEQAAKVNKDCILYLQ 174

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P +    ++   L + +   NP+W++S+QTHK++ I
Sbjct: 175 P-EWSVRDKVVPLIVDFVMANPQWKVSLQTHKYLNI 209


>gi|170076908|ref|YP_001733546.1| radical SAM domain-containing protein [Synechococcus sp. PCC 7002]
 gi|169884577|gb|ACA98290.1| Radical SAM domain protein [Synechococcus sp. PCC 7002]
          Length = 218

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 64/217 (29%), Positives = 97/217 (44%), Gaps = 29/217 (13%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
            Y I E F ++QGEG   G  A F R +GC++            C +CDT  +     + 
Sbjct: 23  TYPIVETFHSIQGEGFWCGTAAFFIRLAGCDV-----------GCPWCDTK-ISWNPKRH 70

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
            + +V QL + ++        + +  V+TGGEPL+    PL   L + G  + +ET+G  
Sbjct: 71  PQVSVGQLKEQVQ------TAQPKIIVITGGEPLMHDLYPLTTGLKETGIPLHLETSGAH 124

Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQV-----NVSPENYIGFDFERFSLQ 174
                 DW+ +SP   KA          ELK+V  Q        S    I  +  +  LQ
Sbjct: 125 PLNGHFDWLTLSPKPFKAPLPEIYDHVSELKVVIDQATDFQWAESQVQKIAANIPK-YLQ 183

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           P        + +L   Y   +P+WRL +QTHKF+G+R
Sbjct: 184 P--QWENPASQSLIFDYILAHPEWRLGLQTHKFLGVR 218


>gi|124024647|ref|YP_001018954.1| organic radical activating protein [Prochlorococcus marinus str.
           MIT 9303]
 gi|123964933|gb|ABM79689.1| possible organic radical activating enzyme [Prochlorococcus marinus
           str. MIT 9303]
          Length = 226

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 93/239 (38%), Gaps = 48/239 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F ++QGEG H GR A F R +GC++            C +CDT           
Sbjct: 5   LPVVETFHSIQGEGAHVGRSAFFIRLAGCDV-----------GCSWCDTKHSW----NSR 49

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-------GFEIAV 116
            +    +  L  E     +    + VLTGGEPL     PL +AL++           I +
Sbjct: 50  NHPQIAVEQLAVETATAAKNGAAFVVLTGGEPLQHNIAPLCEALHRATETNPDGPLPIHL 109

Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQ----------VNVSPENY 163
           ET+G  +      WI +SPK     +   +    ELK+V  +             +    
Sbjct: 110 ETSGVNQLSGVPTWITLSPKRHAPPRTDLLAACHELKVVVHERGDLNFAESMAQAALAAR 169

Query: 164 IGFDFER-----------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
              D  +             LQP  G        LA  +   +P WRLS+QTHK++GIR
Sbjct: 170 KNDDASQSRLSNASKEPLLFLQP--GWATTTGQQLAFEHVQSHPHWRLSMQTHKWLGIR 226


>gi|77360060|ref|YP_339635.1| queC protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76874971|emb|CAI86192.1| queC protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 215

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 90/228 (39%), Gaps = 40/228 (17%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---------QG 59
           +F T+QGE  + G  ++F R  GC +            C +CDT                
Sbjct: 1   MFETIQGEASYTGTPSIFLRLQGCPV-----------GCSWCDTKQTWDVDNVYKVSLDE 49

Query: 60  TKGGRYNVDQLADL----IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
           T   + + D  A      I   + +     ++ V+TGGEP +    P+   L++ GF   
Sbjct: 50  TVEKKADSDHWAQASAANILALFQSRGYTAKHVVITGGEPCMYDLNPVCNLLHENGFSTQ 109

Query: 116 VETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKLVFPQVNVSPENYIGF- 166
           +ET+GT E       W+ VSPK             ++   E+K          E    F 
Sbjct: 110 IETSGTFEILAPAQTWVTVSPKINMRGGFEVLTTAMQRANEIKHPVAMQKHVEELEELFV 169

Query: 167 ----DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               + +   LQP+     E  T LAI  C     WRLS+Q HK++GI
Sbjct: 170 KTGVNPKLVYLQPISQK--ESATKLAIKTCIAK-NWRLSIQVHKYLGI 214


>gi|150026231|ref|YP_001297057.1| hypothetical protein FP2200 [Flavobacterium psychrophilum JIP02/86]
 gi|149772772|emb|CAL44256.1| Protein of unknown function YgcF [Flavobacterium psychrophilum
           JIP02/86]
          Length = 210

 Score =  207 bits (529), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 59/215 (27%), Positives = 85/215 (39%), Gaps = 25/215 (11%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           ++  + E F T+QGEG H G  A F R  GC++            C +CD          
Sbjct: 14  EMLPLMEEFYTIQGEGYHTGTAAYFIRIGGCDV-----------GCHWCDVKESWNAALH 62

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
                     D+I E      K  +  V+TGGEPL      L Q L     ++ +ET+G 
Sbjct: 63  PPTKT-----DVIVE---NATKYAKTIVVTGGEPLTWDMTVLTQRLKAENLQVHIETSGA 114

Query: 122 IEPPQGIDWICVSPKAG---CDLKIKGGQELKLVF---PQVNVSPENYIGFDFERFSLQP 175
                  DW C+SPK          +   ELK++         + E     +        
Sbjct: 115 YPVTGAWDWFCLSPKKNKLPVAEAYEIAHELKVIIYNKHDFIFAEEQAAKVNKNAILFLQ 174

Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +    EE T   + Y   NPKWR+S+QTHK++ I
Sbjct: 175 SEWSKKEEMTPFIVDYVMNNPKWRVSLQTHKYLNI 209


>gi|86133041|ref|ZP_01051623.1| radical SAM superfamily protein [Polaribacter sp. MED152]
 gi|85819904|gb|EAQ41051.1| radical SAM superfamily protein [Polaribacter sp. MED152]
          Length = 210

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 58/215 (26%), Positives = 92/215 (42%), Gaps = 27/215 (12%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + E F T+QGEG H G  A F R  GC++            C +CD           
Sbjct: 15  MLPLMEEFYTIQGEGSHTGTAAYFIRVGGCDV-----------GCHWCDVKESWNADLHP 63

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                D + + ++       K     V+TGGEPL+     + + L K   +  +ET+G  
Sbjct: 64  PTM-ADSIIENVK-------KYTDTVVITGGEPLMWSMDYITELLQKNNIKTHIETSGAY 115

Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQV---NVSPENYIGFDFE-RFSLQP 175
                 DW C+SPK          +   ELK++       + + E       + +  LQP
Sbjct: 116 SFSGKWDWFCLSPKKTKLPLTENYREADELKMIIHNKSDFDFAEEQATKVGKKCQLFLQP 175

Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +    E+ T L + Y  +NPKW++S+QTHK++ I
Sbjct: 176 -EWSKKEKMTELIVDYVMKNPKWKVSLQTHKYLNI 209


>gi|319952143|ref|YP_004163410.1| radical sam domain protein [Cellulophaga algicola DSM 14237]
 gi|319420803|gb|ADV47912.1| Radical SAM domain protein [Cellulophaga algicola DSM 14237]
          Length = 215

 Score =  207 bits (528), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 60/216 (27%), Positives = 90/216 (41%), Gaps = 27/216 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           ++  + E F T+QGEG H G  A F R  GC++            C +CD        T 
Sbjct: 19  EMLPLMEEFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCDVKESWNADTH 67

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
                   +++          K     V+TGGEPL     PL + L  R  +  +ET+G 
Sbjct: 68  PPTATETIISN--------AAKYSDTIVITGGEPLTWDMGPLTKGLKARNLQTHIETSGA 119

Query: 122 IEPPQGIDWICVSPKAGCDL---KIKGGQELKLVF---PQVNVSPENYIGFDFERF-SLQ 174
                  DWIC+SPK              ELK++         + E     + E    LQ
Sbjct: 120 YPLTGVWDWICLSPKKNKLPEGRIYDEAHELKMIIFNKHDFIFAEEQAAKTNKECILYLQ 179

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P +    ++   L + Y  +NPKW++S+QTHK++ I
Sbjct: 180 P-EWSVRDKMVPLIVDYVMKNPKWKVSLQTHKYLNI 214


>gi|33866959|ref|NP_898518.1| organic radical activating protein [Synechococcus sp. WH 8102]
 gi|33639560|emb|CAE08944.1| possible organic radical activating enzyme [Synechococcus sp. WH
           8102]
          Length = 206

 Score =  207 bits (528), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 69/217 (31%), Positives = 100/217 (46%), Gaps = 25/217 (11%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              + E F +LQGEG H+GR A F R +GCN+            C +CDT       T  
Sbjct: 7   TLPVVETFHSLQGEGHHSGRSAFFIRLAGCNV-----------GCPWCDTKHSWPVNTHP 55

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGT 121
            R ++  LA  +E+    G     + V+TGGEPL      L  AL +     + +ET+G 
Sbjct: 56  QR-SLRALAADVEQAERNG---AAFTVITGGEPLQHNLDGLASALREASSHPLHLETSGV 111

Query: 122 IEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVN--VSPENYIGFDFER--FSLQ 174
                  DWI +SPK     +   +    ELK+V    +  +  E+      ++    LQ
Sbjct: 112 DGLSGDPDWITLSPKPHRPPRQELLSHCDELKVVIHTADDLLFAESMAAAVSKQTVLLLQ 171

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           P  G    E   LAI +    P+WRLS+QTHK++G+R
Sbjct: 172 P--GWDSSEGQRLAIDHVQNQPRWRLSLQTHKWLGVR 206


>gi|326336650|ref|ZP_08202818.1| GntS protein [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691120|gb|EGD33091.1| GntS protein [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 205

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 27/216 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           ++  + E F T+QGEG + G  A F R +GCN+            C +CD      +   
Sbjct: 9   EVLPLMESFYTIQGEGFYKGTAAYFIRLAGCNV-----------GCHWCDVK----ESWD 53

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
              + +  +  ++EE      K  +  ++TGGEPL+    PL + L  +G    +ET+G 
Sbjct: 54  ASIHTLVPIKTMVEE----AFKFSKIAIITGGEPLMYNLDPLTELLRSKGIRTHIETSGA 109

Query: 122 IEPPQGIDWICVSPKAG---CDLKIKGGQELK-LVFPQVNVSPENYIGFDFER---FSLQ 174
                  DWIC+SPK          +   ELK +++ Q +      +           LQ
Sbjct: 110 HPLTGVWDWICLSPKKNKRPLPPIHQKANELKMIIYNQHDFLFAEEMSVLTRTDCIRYLQ 169

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P +    E+     + Y  ++P+W++S+Q HK++ I
Sbjct: 170 P-EWSRREKMIPKMVEYVMEHPQWKISLQMHKYLNI 204


>gi|78214102|ref|YP_382881.1| organic radical activating protein [Synechococcus sp. CC9605]
 gi|78198561|gb|ABB36326.1| possible organic radical activating enzyme [Synechococcus sp.
           CC9605]
          Length = 205

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 72/217 (33%), Positives = 101/217 (46%), Gaps = 27/217 (12%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F +LQGEG HAGR A F R +GC           +  C +CDT           
Sbjct: 7   LPVVETFHSLQGEGHHAGRSAFFIRLAGC-----------TVGCPWCDTKHSW-PSKGHP 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTI 122
              +D LAD  +   + GE    + V+TGGEPL     PL QAL+ R G  + +ET+G  
Sbjct: 55  EQPIDALADAAQ---MAGEVGAGFVVITGGEPLHHDLQPLTQALDARCGLPLHLETSGVD 111

Query: 123 EPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVN-----VSPENYIGFDFERFSLQ 174
                 DWI +SPK     +   ++   ELK+V           +  +    D ER  LQ
Sbjct: 112 PISGRFDWITLSPKRHRPPRQELLQACHELKVVVHGPEDISFAAAMASQCENDTERL-LQ 170

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           P  G        LA+ +  Q+ +WRLS+Q+HK++ IR
Sbjct: 171 P--GWECSIGEALAVEHVRQHSRWRLSMQSHKWLRIR 205


>gi|332042673|gb|EGI78873.1| Radical SAM domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 209

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 27/216 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           K+  + E F T+QGEG H G  A F R  GC++            C +CD      +   
Sbjct: 13  KMLPLMEEFYTIQGEGFHKGTAAYFVRIGGCDV-----------GCHWCDVK----ESWI 57

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
              +   +   ++       ++  +  V+TGGEPL      L + L   G  I +ET+G 
Sbjct: 58  AQLHPPTETEKIVA----NAKQYSKTIVVTGGEPLTWDMTELTKQLKAEGMNIHIETSGA 113

Query: 122 IEPPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQVN---VSPENYIGFDFERF-SLQ 174
            E     DWIC+SPK              ELK +    +    + E     + +    LQ
Sbjct: 114 YELTGEWDWICLSPKKMKLPTQGVYDKANELKCIIYNKDDFRFAEEQAEKVNGDCILYLQ 173

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P +    ++   + + Y  +NPKW++S+QTHK++ I
Sbjct: 174 P-EWSKRDKVVPMIVDYVMENPKWKVSLQTHKYLNI 208


>gi|149369786|ref|ZP_01889637.1| hypothetical protein SCB49_01894 [unidentified eubacterium SCB49]
 gi|149356277|gb|EDM44833.1| hypothetical protein SCB49_01894 [unidentified eubacterium SCB49]
          Length = 209

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 59/214 (27%), Positives = 92/214 (42%), Gaps = 27/214 (12%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F T+QGEG + G  A F R  GC++            C +CD            
Sbjct: 15  LPLMEEFYTIQGEGYYKGTAAYFIRIGGCDV-----------GCHWCDVKESWNPDIHPP 63

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
             +++ +AD          K  +  V+TGGEPL+    PL + L  +G    +ET+G   
Sbjct: 64  T-SIETIAD-------NAAKYSKTIVITGGEPLMWDMNPLTELLKSKGVNTHIETSGAYS 115

Query: 124 PPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQVN---VSPENYIGFDFE-RFSLQPM 176
                DWIC+SPK              ELK++    +    + E     + + +  LQP 
Sbjct: 116 LSGTWDWICLSPKKMKLPTPEVYAAAHELKMIIYNKDDFRFAEEQASKVNADCKLFLQP- 174

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    ++     + Y  QNPKW +S+QTHK++ I
Sbjct: 175 EWSKRDKMVPEIVDYVMQNPKWVVSLQTHKYLNI 208


>gi|254506224|ref|ZP_05118367.1| organic radical activating enzyme [Vibrio parahaemolyticus 16]
 gi|219550704|gb|EED27686.1| organic radical activating enzyme [Vibrio parahaemolyticus 16]
          Length = 216

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 93/230 (40%), Gaps = 43/230 (18%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68
           +F T+QGEG   G  +VF R   C +            C +CDT       T     +  
Sbjct: 1   MFETIQGEGVFTGVPSVFVRLQECPV-----------GCAWCDTKQTW-DATPQDETSFS 48

Query: 69  QL--------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
           ++              A  I +++   E   ++ V+TGGEP +    PL +A    G + 
Sbjct: 49  EIMKKTQDSPTWCQSSAQGIVDEYRNQEYTAKHIVITGGEPCIYDLTPLTEAFEAIGCQC 108

Query: 115 AVETNGTIEPPQ-GIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSPENYIG 165
            +ET+GT E       W+ VSPK     K+           E+K  V  Q ++   + + 
Sbjct: 109 QIETSGTSEVRATDNTWVTVSPKVAMKGKLPVLDSALVRANEIKHPVATQKDIDQLDELL 168

Query: 166 FDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              +       +LQP+        T L I  C +   WRLS+QTHK++ I
Sbjct: 169 ERAKVPETTVVALQPISQK--PRATQLCIDVCVKR-NWRLSIQTHKYLSI 215


>gi|307150184|ref|YP_003885568.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306980412|gb|ADN12293.1| Radical SAM domain protein [Cyanothece sp. PCC 7822]
          Length = 205

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 93/218 (42%), Gaps = 31/218 (14%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
            Y I E F ++QGEG   G  A F R  GC+++           C +CD      +    
Sbjct: 10  TYPIVETFHSIQGEGAWTGVSAFFIRLGGCDVY-----------CPWCDQK----ESWNP 54

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
            R+    + +L+E   +         V+TGGEPL+   +PL + L   G  + +ET+G+ 
Sbjct: 55  KRHPHQSVENLLESAKMAN---PAIVVITGGEPLMHDLIPLTRELQLLGLRVHLETSGSH 111

Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF------SL 173
                  W+  SPK      +   +   ELK+V    N    ++      +        L
Sbjct: 112 PFSGNFHWVTFSPKPYKRPHESIYEQVNELKVVI--ANEEDLHWAQRQAAKLPSTVVKYL 169

Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           QP        +  L   +  ++P+WR+S+QTHKF+ +R
Sbjct: 170 QPEWNT--PNSGALIFEFVLKHPQWRMSLQTHKFLNVR 205


>gi|88809463|ref|ZP_01124971.1| possible organic radical activating enzyme [Synechococcus sp. WH
           7805]
 gi|88786682|gb|EAR17841.1| possible organic radical activating enzyme [Synechococcus sp. WH
           7805]
          Length = 208

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 63/215 (29%), Positives = 96/215 (44%), Gaps = 24/215 (11%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F +LQGEG HAGR A F R +GC              C +CDT           
Sbjct: 11  LPVVETFHSLQGEGLHAGRSAFFIRLAGC-----------RVGCSWCDTKHSW----PAD 55

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-RGFEIAVETNGTI 122
            + +  +  L  E          + V+TGGEPL      L QAL   R   + +ET+G  
Sbjct: 56  SHPLRPIDSLATEAAAAASDGAAFVVITGGEPLHHNLDALAQALRSLRSLPLHLETSGVD 115

Query: 123 EPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQ-VNVSPENYIGFDFER--FSLQPM 176
                 DWI +SPK     +   ++   ELK+V  +  ++   + +     +  + LQP 
Sbjct: 116 PLSGDPDWITLSPKRHAPPRAELLRRCHELKVVVHEPADLLFADVVAAQAPQATWLLQP- 174

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            G    E   LA+    ++ +WRLS+Q+HK++G+R
Sbjct: 175 -GWESAEGQQLALDAARRDGRWRLSLQSHKWLGVR 208


>gi|313157136|gb|EFR56566.1| radical SAM domain protein [Alistipes sp. HGB5]
          Length = 211

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 64/218 (29%), Positives = 100/218 (45%), Gaps = 30/218 (13%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +L  + E F T+QGEG HAG+ A F R  GC++            CR+CD  +       
Sbjct: 14  RLLPLVEDFYTIQGEGFHAGKPAYFIRLGGCDV-----------GCRWCDAKYTW----N 58

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
              Y    +  +I+          +  V+TGGEPLL     L + L+++G +I +ET+GT
Sbjct: 59  PKLYPPTDVRTVIDRALAC---PAQAIVITGGEPLLYPLGVLTETLHEKGLQIFLETSGT 115

Query: 122 IEPPQGIDWICVSPK---AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER------FS 172
                  DW+C+SPK      D  ++   ELK++    + S   +   +  R        
Sbjct: 116 HPFSGYFDWVCLSPKRQQPPLDEALERAHELKVIVE--SESDFEWAERNAARVRPECMLY 173

Query: 173 LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           LQP +    E      + Y   +PKW +S+QTHK++ I
Sbjct: 174 LQP-EWSVAERVMPAMVEYAKAHPKWNISIQTHKYMHI 210


>gi|116074183|ref|ZP_01471445.1| possible organic radical activating enzyme [Synechococcus sp.
           RS9916]
 gi|116069488|gb|EAU75240.1| possible organic radical activating enzyme [Synechococcus sp.
           RS9916]
          Length = 202

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 67/215 (31%), Positives = 99/215 (46%), Gaps = 24/215 (11%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F +LQGEG HAGR A F R +GCN+            C +CDT     Q +   
Sbjct: 5   LPVVETFHSLQGEGLHAGRSAFFIRLAGCNV-----------GCSWCDTKHSWPQSS--- 50

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTI 122
            + +  +  L  E    G+    + V+TGGEPL      L  A+       I +ET+G  
Sbjct: 51  -HPLQSVDSLAAEAAAAGQAGAAFVVITGGEPLHHNLDGLTGAIRTACTLPIHIETSGVD 109

Query: 123 EPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVN---VSPENYIGFDFERFSLQPM 176
                 DWI +SPK     +   ++   ELK+V  + N    +           + LQP 
Sbjct: 110 PLSGTPDWITLSPKRHSPPRAEVLRACHELKVVVHEPNDLLFAEVAASQAPQASWLLQP- 168

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            G   E+   LAI+Y   +P+WRLS+Q+HK++ +R
Sbjct: 169 -GWQSEKGQQLAINYAQHHPRWRLSLQSHKWLQVR 202


>gi|172035924|ref|YP_001802425.1| hypothetical protein cce_1008 [Cyanothece sp. ATCC 51142]
 gi|171697378|gb|ACB50359.1| hypothetical protein cce_1008 [Cyanothece sp. ATCC 51142]
          Length = 213

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 91/218 (41%), Gaps = 27/218 (12%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +  Y I EIF +LQGEG   G  A F R +GC++            C +CD      +  
Sbjct: 16  LMTYPIVEIFHSLQGEGTWTGMSAFFIRLAGCDV-----------HCPWCDQK----ESW 60

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
               Y    +  L               V+TGGEPL+    PL +AL K G  + +ET+G
Sbjct: 61  TSKIYPQQSIKTL---AEAAKAANPAMVVITGGEPLMYDLFPLTKALKKLGLRVHLETSG 117

Query: 121 TIEPPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVNV---SPENYIGFDFERF-SL 173
                   DW+ +SP   K   +       ELK+V         + E       +    L
Sbjct: 118 AYPFSGQFDWVTLSPKPFKVPHESIYPQVNELKVVITNQEDFHWAEEQEKKVPPQALKYL 177

Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           QP       E+ +L   Y  + P+WR+S+Q HKF+G+R
Sbjct: 178 QPE--WNYPESQSLIFDYIRKAPQWRMSLQIHKFLGVR 213


>gi|167751865|ref|ZP_02423992.1| hypothetical protein ALIPUT_00107 [Alistipes putredinis DSM 17216]
 gi|167660106|gb|EDS04236.1| hypothetical protein ALIPUT_00107 [Alistipes putredinis DSM 17216]
          Length = 211

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 62/216 (28%), Positives = 97/216 (44%), Gaps = 26/216 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   + E F T+QGEG H G+ A F R  GC++            CR+CD  +       
Sbjct: 14  RKLPLVEDFYTIQGEGFHTGKPAYFIRLGGCDV-----------GCRWCDAKYTW----N 58

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
              Y    +++++         + +  V+TGGEPLL    PL  AL   G +I +ET+G+
Sbjct: 59  PKLYPPTDISEVVRRATSC---QAQAIVITGGEPLLYPLGPLTSALKGHGLKIFLETSGS 115

Query: 122 IEPPQGIDWICVSPK---AGCDLKIKGGQELKLVFPQ---VNVSPENYIGFDFE-RFSLQ 174
                  DW+C+SPK              ELK++  +   +  +  N      E +  LQ
Sbjct: 116 HPFSGYFDWVCLSPKRQQPPLPEAFWRAHELKVIVEREADLQWAERNAEQVGRECKLFLQ 175

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P +    EE   L + Y   +P W +S+QTHK++ I
Sbjct: 176 P-EWSVSEEIMPLLVEYVKAHPAWNISIQTHKYMHI 210


>gi|284929204|ref|YP_003421726.1| organic radical activating enzyme [cyanobacterium UCYN-A]
 gi|284809648|gb|ADB95345.1| organic radical activating enzyme [cyanobacterium UCYN-A]
          Length = 208

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 61/218 (27%), Positives = 96/218 (44%), Gaps = 27/218 (12%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +  Y I E F ++QGEG   G  A F R +GCN+            C +CD        T
Sbjct: 11  LTTYPIAETFHSIQGEGAWTGVSAFFIRLAGCNV-----------GCPWCDQKESWTDKT 59

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
              +Y+ + L+   ++            V+TGGEPL+    PL   L K G +I +ET+G
Sbjct: 60  -FPKYSSEMLSTKAQQA------NASIVVITGGEPLMYNLFPLTDKLRKLGMKIHLETSG 112

Query: 121 TIEPPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVNV---SPENYIGFDFERF-SL 173
           +       +W+  SP   KA  +       ELK++         + +     + +    L
Sbjct: 113 SYPFSGNFNWVTFSPKPFKAPHESIYVKASELKIIIADQKDFEWAEKQKSKTNSQSINFL 172

Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           QP          +L   Y  ++P+WR+S+QTHKF+G+R
Sbjct: 173 QPEWNSRTSS--SLIYKYICKHPEWRMSLQTHKFLGVR 208


>gi|305665081|ref|YP_003861368.1| hypothetical protein FB2170_02240 [Maribacter sp. HTCC2170]
 gi|88709833|gb|EAR02065.1| hypothetical protein FB2170_02240 [Maribacter sp. HTCC2170]
          Length = 210

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 27/215 (12%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + E F T+QGEG H G  A F R  GC++            C +CD      +    
Sbjct: 15  MLPLMEEFYTIQGEGYHKGTAAYFVRVGGCDV-----------GCHWCDVK----ESWDA 59

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +    +  ++    +         V+TGGEPL     PL QAL  +     +ET+G  
Sbjct: 60  ETHPPTDIKSIV----VNAAVYSDTIVVTGGEPLTWDMGPLTQALKSKNINTHIETSGAY 115

Query: 123 EPPQGIDWICVSPKAG---CDLKIKGGQELK-LVFPQVNVSPENYIGFDFER---FSLQP 175
           +     DWIC+SPK       L  +   ELK +V+ + ++           +     LQP
Sbjct: 116 KLTGDWDWICLSPKKNKLPSGLIYEKAHELKVIVYNKHDLIFAEEQAAQVGKNCILYLQP 175

Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +    ++   + + Y  +NPKW++S+QTHK++ I
Sbjct: 176 -EWSVRDKVVPMIVEYVMKNPKWKVSLQTHKYLNI 209


>gi|88803479|ref|ZP_01119005.1| hypothetical protein PI23P_12842 [Polaribacter irgensii 23-P]
 gi|88781045|gb|EAR12224.1| hypothetical protein PI23P_12842 [Polaribacter irgensii 23-P]
          Length = 209

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 27/215 (12%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + E F T+QGEG H G  A F R  GC++            C +CD     ++ +  
Sbjct: 14  MLPLMEEFYTIQGEGCHTGTAAYFIRVGGCDV-----------GCHWCD-----VKESWN 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              +   LAD I E     +K     V+TGGEPL+     + ++L K   +  +ET+G  
Sbjct: 58  ADLHPPTLADTIVENV---KKHANTVVITGGEPLMWSMDYITESLQKNSIKTHIETSGAY 114

Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQ----VNVSPENYIGFDFERFSLQP 175
                 DW C+SP   K   D       ELK++       +    E        +  LQP
Sbjct: 115 AFSGKWDWFCLSPKKTKMPLDECYPEADELKMIIHNKSDFIFAEQEAEKVGQKCQLYLQP 174

Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +    E+ T L ++Y  +NPKW++S+QTHKF+ I
Sbjct: 175 -EWSKKEKMTALIVAYVMKNPKWKISLQTHKFLNI 208


>gi|291514643|emb|CBK63853.1| Organic radical activating enzymes [Alistipes shahii WAL 8301]
          Length = 211

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 34/220 (15%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           ++  + E F T+QGEG HAG+ A F R  GC++            CR+CD  +       
Sbjct: 14  RMLPLVEDFYTIQGEGFHAGKPAYFIRLGGCDV-----------GCRWCDAKYTW----N 58

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
              Y    +  +I+          +  V+TGGEPLL     L + L +RG +I +ET+G+
Sbjct: 59  PKLYPPTDVQTVIDRAMSC---PAQAIVITGGEPLLYPLGVLTETLRERGLQIFLETSGS 115

Query: 122 IEPPQGIDWICVSPK---AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER-------- 170
                  DW+C+SPK      D   +   ELK++      S E++   +           
Sbjct: 116 HPFSGVFDWVCLSPKRRQPPLDEAFERADELKVIVE----SEEDFEWAERNAARVGGKCL 171

Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             LQP +    E+     + Y   +P+W +S+QTHK++ I
Sbjct: 172 LFLQP-EWSVAEKVMPAIVEYAKAHPQWNISIQTHKYMHI 210


>gi|261749286|ref|YP_003256971.1| hypothetical protein BPLAN_199 [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497378|gb|ACX83828.1| conserved hypothetical protein [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 204

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 67/216 (31%), Positives = 101/216 (46%), Gaps = 29/216 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + +KE F ++QGEG  +G  A F RF GCN            QC +CDT     +  K  
Sbjct: 8   FPVKETFYSIQGEGFFSGIAAYFIRFEGCN-----------IQCDWCDTK-SSWKIEKKD 55

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
              V ++ + I E       + +  V+TGGEP++    PL   L K+G+ I VET+G+  
Sbjct: 56  FLTVHKIINNINE-------KVKTIVITGGEPMMWNLTPLTSLLKKKGYRIHVETSGSYP 108

Query: 124 PPQ-GIDWICVSPKA---GCDLKIKGGQELKLVF-PQVNVSPENYIGFDFER----FSLQ 174
             +  IDWI +SPK          K   ELK++   + + S      F  ++      LQ
Sbjct: 109 IHEKDIDWITISPKKKKRPLKENYKKMNELKIIICNESDFSFAEEQAFYVKKSNCVLCLQ 168

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           P +     +     ISY   +PKW++S+Q HK + I
Sbjct: 169 P-EWKNNIKILPKIISYIKNHPKWKISLQIHKILNI 203


>gi|110638115|ref|YP_678324.1| organic radical activating enzyme [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280796|gb|ABG58982.1| conserved hypothetical protein; possible organic radical activating
           enzyme [Cytophaga hutchinsonii ATCC 33406]
          Length = 205

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 64/214 (29%), Positives = 97/214 (45%), Gaps = 26/214 (12%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F T+QGEG + GR A F R +GC++            C +CD      +     
Sbjct: 10  LPVMESFYTIQGEGHYQGRAAYFIRLAGCDV-----------GCHWCDVK----ESWDAS 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           ++ +  +  ++ E        GR  V+TGGEPL+     L   L + GF   +ET+G   
Sbjct: 55  QHPMQTIEHMVAE---ASAFTGRIAVITGGEPLMHDLTNLTAQLKQEGFRNHIETSGAHP 111

Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVSPENYIGFDFE---RFSLQPM 176
                DWIC+SP   KA     I+   ELK +VF   ++          +   +  LQP 
Sbjct: 112 LSGEWDWICLSPKKFKAPLPSVIEACDELKIIVFHSSDIEWAKTFLPKLKKGCKLFLQP- 170

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    EE     IS+  +NP+W +S+Q HKF+ I
Sbjct: 171 EWSRQEEMLPQIISFVKENPEWEISLQIHKFMNI 204


>gi|256819499|ref|YP_003140778.1| Radical SAM domain-containing protein [Capnocytophaga ochracea DSM
           7271]
 gi|256581082|gb|ACU92217.1| Radical SAM domain protein [Capnocytophaga ochracea DSM 7271]
          Length = 210

 Score =  204 bits (521), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 90/217 (41%), Gaps = 27/217 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +L  + E F TLQGEG + G  A F R  GC++            C +CD      +  +
Sbjct: 14  ELLPLMEAFYTLQGEGFYKGTAAYFIRLGGCDV-----------GCHWCDVK----ESWQ 58

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
              + +  +  ++ E         +  ++TGGEPL+     L + L   G    +ET+G 
Sbjct: 59  AEAHPLVPVDTIVAE----ALAHSKTIIITGGEPLMWNLTLLTEKLRAGGARTHIETSGA 114

Query: 122 IEPPQGIDWICVSPKAGCDL---KIKGGQELKLVF---PQVNVSPENYIGFDFER-FSLQ 174
                  DWIC+SPK         ++   ELK+V         + E       E    LQ
Sbjct: 115 HPLSGSWDWICLSPKKIKRPVGDVLQKANELKMVIYNNHDFIFAEEMAAQVSPECLLYLQ 174

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           P +     E     + Y   +P+W+ S+Q HK++ IR
Sbjct: 175 P-EWSKRAEVMPKIVDYVMAHPQWKASLQMHKYLDIR 210


>gi|315224929|ref|ZP_07866748.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Capnocytophaga ochracea F0287]
 gi|314945042|gb|EFS97072.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Capnocytophaga ochracea F0287]
          Length = 210

 Score =  204 bits (520), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 56/217 (25%), Positives = 90/217 (41%), Gaps = 27/217 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +L  + E F TLQGEG + G  A F R  GC++            C +CD      +  +
Sbjct: 14  ELLPLMEAFYTLQGEGFYKGTAAYFIRLGGCDV-----------GCHWCDVK----ESWQ 58

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
              + +  +  ++ E         +  ++TGGEPL+     L + L   G    +ET+G 
Sbjct: 59  AEAHPLVPVDTIVAE----ALAHSKTIIITGGEPLMWNLTLLTEKLRAGGARTHIETSGA 114

Query: 122 IEPPQGIDWICVSPKAGCDL---KIKGGQELKLV-FPQVNVSPENYIGFDFE---RFSLQ 174
                  DWIC+SPK         ++   ELK+V +   +      I           LQ
Sbjct: 115 HPLSGTWDWICLSPKKIKRPVGDVLQKANELKMVIYNNHDFIFAEEIAAQVSPECLLYLQ 174

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           P +     E     + Y   +P+W+ S+Q HK++ IR
Sbjct: 175 P-EWSKRAEVMPKIVDYVMAHPQWKASLQMHKYLDIR 210


>gi|149276391|ref|ZP_01882535.1| hypothetical protein PBAL39_01687 [Pedobacter sp. BAL39]
 gi|149232911|gb|EDM38286.1| hypothetical protein PBAL39_01687 [Pedobacter sp. BAL39]
          Length = 193

 Score =  204 bits (519), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 63/211 (29%), Positives = 96/211 (45%), Gaps = 26/211 (12%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
            E F T+QGEG + G+ A F R  GC++            C +CD      +      + 
Sbjct: 1   MEEFYTIQGEGFNTGKAAYFIRLGGCDV-----------GCHWCDVK----ESWDAELHP 45

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQ 126
           +    D++E+        G+  V+TGGEPL+     L + L +R     +ET+G      
Sbjct: 46  LTAADDIVEK---ADSFPGKAVVITGGEPLIYNLDYLTRKLRERNILTFIETSGAYPLSG 102

Query: 127 GIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVS-PENYIGFDFE--RFSLQPMDGP 179
             DWIC+SP   KA          ELK ++F + +    E Y     +  +  LQP +  
Sbjct: 103 SWDWICLSPKKFKAPRPDITPFANELKVIIFNKSDFKWAEQYAETVSKNCKLYLQP-EWS 161

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             +E T + I Y   NPKW +S+QTHK++ I
Sbjct: 162 KSKEITPMIIEYVMANPKWEISLQTHKYLNI 192


>gi|149910796|ref|ZP_01899430.1| radical activating enzyme [Moritella sp. PE36]
 gi|149806130|gb|EDM66110.1| radical activating enzyme [Moritella sp. PE36]
          Length = 222

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 90/237 (37%), Gaps = 48/237 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y + EIF T+QGEG   G   +F R  GC++            C +CDT           
Sbjct: 3   YPVNEIFETVQGEGHFTGYPVIFIRLQGCDV-----------GCSWCDTKQTWTVDPEMQ 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                             +   +   +I++         ++ V++GGEP     V L   
Sbjct: 52  VSQQTVNKACDDKPHWANFTAQEFITMIQKNGFVA----KHIVISGGEPCQYDLVELTSE 107

Query: 107 LNKRGFEIAVETNGTIEPPQ-GIDWICVSPKAGCDL-------KIKGGQELKLVFPQVNV 158
           L + G+   +ET+GT E       W+ VSPK             ++   E+K V      
Sbjct: 108 LEQAGYFCQIETSGTSEVRATDSTWVTVSPKIQMKGQLPVLQSALRRANEIKHVIAMEKH 167

Query: 159 SPE-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             E       I    +   LQP+     +  T+LAI  C +   W+LSVQ HK+I I
Sbjct: 168 IEELDALIADIDTSDKIMCLQPISQ--QKRATDLAIKLCIER-NWKLSVQMHKYIFI 221


>gi|325954686|ref|YP_004238346.1| radical SAM protein [Weeksella virosa DSM 16922]
 gi|323437304|gb|ADX67768.1| Radical SAM domain protein [Weeksella virosa DSM 16922]
          Length = 215

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 98/216 (45%), Gaps = 27/216 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +L  + E F TLQGEG +AG  A F R  GC++            C +CD      +   
Sbjct: 19  RLLPVMEHFYTLQGEGAYAGVAAYFIRLGGCDV-----------GCHWCDVK----ESWD 63

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
              + +  +A L +E         +  ++TGGEPL+     L   L+K G  I +ET+G 
Sbjct: 64  AEIHPLTDIATLAKEAAAI----CKTIIITGGEPLMWDLTFLTSELHKHGANIHIETSGA 119

Query: 122 IEPPQGIDWICVSPKA---GCDLKIKGGQELK-LVFPQVNVSPENYIGF---DFERFSLQ 174
                 IDW+ +SPK      +   +   ELK +++ Q + +          D     LQ
Sbjct: 120 YPLTGEIDWVTLSPKKTKLPVESIYQQANELKMIIYNQHDFTFAEEQAAKVKDNCLLYLQ 179

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            ++    +  +   + +  QNPKWR++VQTHK++ I
Sbjct: 180 -VEWSKRDSMSPKLVEFIKQNPKWRITVQTHKYLDI 214


>gi|260435246|ref|ZP_05789216.1| organic radical activating enzyme [Synechococcus sp. WH 8109]
 gi|260413120|gb|EEX06416.1| organic radical activating enzyme [Synechococcus sp. WH 8109]
          Length = 205

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/217 (31%), Positives = 99/217 (45%), Gaps = 27/217 (12%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F +LQGEG HAGR A F R +GC           +  C +CDT           
Sbjct: 7   LPVVETFHSLQGEGRHAGRSAFFIRLAGC-----------TVGCSWCDTKHSW----PSQ 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTI 122
            +    +  L     +  E    + V+TGGEPL     PL QAL+ R G  + +ET+G  
Sbjct: 52  GHAEQPIGALASAAQMAAEAGASFVVITGGEPLHHNLQPLTQALDARCGLPLHLETSGVD 111

Query: 123 EPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVN-----VSPENYIGFDFERFSLQ 174
                 DWI +SPK     +   ++   ELK+V           +  +    D ER  LQ
Sbjct: 112 PLTGRFDWITLSPKRHRPPRQELLQACHELKVVVHGPEDISFAAAMASQCEDDTERL-LQ 170

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           P  G        LA+ +  ++P+WRLS+Q+HK++GIR
Sbjct: 171 P--GWESSIGEELALDHVRKHPQWRLSLQSHKWLGIR 205


>gi|223041979|ref|ZP_03612163.1| hypothetical protein AM202_0574 [Actinobacillus minor 202]
 gi|223017236|gb|EEF15664.1| hypothetical protein AM202_0574 [Actinobacillus minor 202]
          Length = 206

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 35/222 (15%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
            Y I EIF +LQGEG + G  ++F RF  CNL            C +CDT +        
Sbjct: 7   TYPIVEIFESLQGEGFNTGMPSIFIRFGKCNLT-----------CSWCDTPYHQFDS--- 52

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
             + + Q+ + +E        + +  ++TGGEP +Q ++  L+  L +RG+ +A+ETNG 
Sbjct: 53  --WTLPQILEKVE------GYQAKNIIITGGEPTIQPNLTVLLDELKRRGYFLAIETNGL 104

Query: 122 IEPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS--PENYIGFDFERFSLQ 174
            + P  ID+I  SPK     K     I    E+++V  +  ++   +       ER+ L 
Sbjct: 105 KDIPSQIDYIATSPKRLYAEKYQRRCIPFAHEVRIVADENVIAFCEQIEAQISAERYYLS 164

Query: 175 PMDGP----FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211
           P +       LE  T +  ++     PKW+LS+QTHK +GI 
Sbjct: 165 PCEVEGKMNLLETITQIGLLNQRKNKPKWQLSIQTHKIVGIE 206


>gi|228469718|ref|ZP_04054686.1| organic radical activating enzyme [Porphyromonas uenonis 60-3]
 gi|228308737|gb|EEK17463.1| organic radical activating enzyme [Porphyromonas uenonis 60-3]
          Length = 201

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 101/223 (45%), Gaps = 34/223 (15%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M+   + EIF +LQGEGG  GR  +F R SGCNL            C +CDTDF G    
Sbjct: 1   MQSLPVNEIFYSLQGEGGQMGRAMLFVRLSGCNL-----------ACDYCDTDFAG---- 45

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
                 V ++   +E          R  + TGGEP L +    I   +++G+  ++ETNG
Sbjct: 46  -HRLMTVAEILAKLES------YPCRDILWTGGEPTLALREEHIAFFHEQGYRQSIETNG 98

Query: 121 TIEPPQGIDWICVSPKAGCDLKIK---------GGQELKLVFP-QVNVSPENYIGFDFER 170
           T   P+G+D++  SPKA     ++         G  E++        + P         R
Sbjct: 99  TRPVPRGLDYVTCSPKAEAISGLRERFVDNYPDGIDEVRWPLQLGAPLPPPIEQLVQARR 158

Query: 171 FSLQPMD--GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           + + P++  G  +       + +   +P+WRLSVQ HK +G R
Sbjct: 159 YYVSPVEETGVEMSAVVARCMDFVLAHPEWRLSVQLHKLLGFR 201


>gi|240949106|ref|ZP_04753454.1| hypothetical protein AM305_01574 [Actinobacillus minor NM305]
 gi|240296501|gb|EER47133.1| hypothetical protein AM305_01574 [Actinobacillus minor NM305]
          Length = 206

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 108/222 (48%), Gaps = 35/222 (15%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
            Y I EIF +LQGEG + G  ++F RF  CNL            C +CDT +        
Sbjct: 7   TYPIVEIFESLQGEGFNTGMPSIFIRFGKCNLT-----------CSWCDTPYHQFDS--- 52

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
             + + Q+ + +E        + +  ++TGGEP +Q ++  L+  L +RG+ +A+ETNG 
Sbjct: 53  --WTLTQILEKVE------GYQAKNIIITGGEPTIQPNLTVLLDELKQRGYFLAIETNGL 104

Query: 122 IEPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQ 174
            + P  ID+I  SPK     K     I    E+++V  +  ++    I    + ER+ L 
Sbjct: 105 KDIPTQIDYIATSPKRLYAKKYQRRCIPFAHEVRIVADENVIAFCEQIETQINAERYYLS 164

Query: 175 PMDGP----FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211
           P +       LE  T +  ++     PKW+LS+QTHK +GI 
Sbjct: 165 PCEVEGKMNLLETITQIGLLNQRKNKPKWQLSIQTHKIVGIE 206


>gi|148240798|ref|YP_001226185.1| organic radical activating protein [Synechococcus sp. WH 7803]
 gi|147849337|emb|CAK24888.1| Organic radical activating enzyme [Synechococcus sp. WH 7803]
          Length = 208

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 64/215 (29%), Positives = 94/215 (43%), Gaps = 24/215 (11%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F +LQGEG HAGR A F R +GC           S  C +CDT           
Sbjct: 11  LPVVETFHSLQGEGLHAGRSAFFIRLAGC-----------SVGCSWCDTKHSW----PAE 55

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTI 122
            +    L  +  E          + V+TGGEPL      L Q L K  G  + +ET+G  
Sbjct: 56  SHPARTLHSIATEAAAAASDGAAFVVITGGEPLHHNLDALAQTLRKICGLPLHLETSGVD 115

Query: 123 EPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQ-VNVSPENYIGFDFER--FSLQPM 176
                 DWI +SPK     +   +    ELK+V  +  ++     +     +  + LQP 
Sbjct: 116 PLSGNPDWITLSPKRHAPPRAELLSRCHELKVVVHEPADLLFAEVLSAQAPQAAWLLQP- 174

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            G    E   LA+    ++ +WRLS+Q+HK++G+R
Sbjct: 175 -GWESVEGQQLALDAARRDGRWRLSLQSHKWLGVR 208


>gi|261380779|ref|ZP_05985352.1| radical SAM domain protein [Neisseria subflava NJ9703]
 gi|284796241|gb|EFC51588.1| radical SAM domain protein [Neisseria subflava NJ9703]
          Length = 211

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 101/222 (45%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 12  YRIVEIFESLQGEGWNTGMPAVFIRLGKCNL-----------ACSWCDTDYL-------- 52

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           ++ +  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 53  KFGMMSLSDIL---GRLKTYTARNIIITGGEPTIQPHLDTLLNALKAEGYFLCIETNGLN 109

Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVS--PENYIGFDFERFSLQP 175
             P  ID++  SPKA    K + G      E+++V     ++   E       + + L P
Sbjct: 110 PAPPQIDYVATSPKACYAAKYESGCIEKADEVRIVADGDVIAFCQEMERKIRAQHYYLSP 169

Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
              DG     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 170 CEQDGVMNIYDTIRQIGVLNSRPDAPVHWQLSVQTHKWAGIE 211


>gi|241759459|ref|ZP_04757563.1| NrdG protein [Neisseria flavescens SK114]
 gi|241320241|gb|EER56574.1| NrdG protein [Neisseria flavescens SK114]
          Length = 211

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 101/222 (45%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 12  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 52

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           ++ +  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 53  KFGMMSLSDIL---GRLKTYTARNVIITGGEPTIQPHLNTLLDALKAEGYFLCIETNGLN 109

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS--PENYIGFDFERFSLQP 175
             P  ID++  SPKA    K     I+   E+++V     V+   E       + + L P
Sbjct: 110 PAPPQIDYVATSPKACYAAKYESSCIEKADEVRIVADGDVVAFCQEMERKIRAQHYYLSP 169

Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
              DG     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 170 CEQDGVMNIYDTIRQIGVLNSRPDAPVHWQLSVQTHKWAGIE 211


>gi|323497330|ref|ZP_08102348.1| organic radical activating enzyme [Vibrio sinaloensis DSM 21326]
 gi|323317413|gb|EGA70406.1| organic radical activating enzyme [Vibrio sinaloensis DSM 21326]
          Length = 216

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 92/232 (39%), Gaps = 47/232 (20%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68
           +F T+QGEG + G  +VF R   C +            C +CDT     +       + D
Sbjct: 1   MFETIQGEGVYTGVPSVFVRLQECPV-----------GCAWCDTKQTW-EALPEDETSFD 48

Query: 69  QL--------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
           ++              A+ I  Q+       ++ V+TGGEP +    PL +A    G + 
Sbjct: 49  RIMVKTQDSPTWCSTSAEGIVNQYRVQGYTAKHIVITGGEPCVYDLRPLTEAFEAIGCQC 108

Query: 115 AVETNGTIEP-PQGIDWICVSPKAGCDLKIK-------GGQELKLVFPQVNVSPENYIGF 166
            +ET+GT E       W+ VSPK     K+           E+K   P       + +  
Sbjct: 109 QIETSGTSEVLTSDNTWVTVSPKVAMKGKLPVLDSALLRADEIK--HPVATEKDIDQLDE 166

Query: 167 DFER--------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             +R         +LQP+        T L I  C +   WRLS+QTHK++ I
Sbjct: 167 LIKRAQVPKQTTIALQPISQK--PRATQLCIDVCVKR-NWRLSIQTHKYLSI 215


>gi|257059021|ref|YP_003136909.1| radical activating enzyme [Cyanothece sp. PCC 8802]
 gi|256589187|gb|ACV00074.1| radical activating enzyme [Cyanothece sp. PCC 8802]
          Length = 205

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 58/215 (26%), Positives = 84/215 (39%), Gaps = 27/215 (12%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
            Y I E F ++QGEG   G  A F R +GC++            C +CD      +    
Sbjct: 10  TYPIVETFHSIQGEGVWTGVNAFFIRLAGCDV-----------HCPWCDQK----ESWPV 54

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             Y    L  L E             ++TGGEPL+    PL   L   G  + +ET+G+ 
Sbjct: 55  QPYPQQSLEALGEAAKRAN---PAIVIITGGEPLMHNLDPLTAQLRGLGLRVHLETSGSH 111

Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVF---PQVNVSPENYIGFDFERF-SLQP 175
                 DW+  SPK      +       ELK+V      +  +         +    LQP
Sbjct: 112 PFSGQFDWVTFSPKPFKLPHESIYPQVDELKVVITSQEDLQWAEHQAAQVPLKTIKYLQP 171

Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                  E+  L   Y   +P WR+S+Q HKF+G+
Sbjct: 172 EWNT--PESQQLIFDYVLHHPDWRISLQVHKFLGV 204


>gi|262195340|ref|YP_003266549.1| radical SAM protein [Haliangium ochraceum DSM 14365]
 gi|262078687|gb|ACY14656.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365]
          Length = 211

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 106/222 (47%), Gaps = 35/222 (15%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           Y +KEIF  TLQGEG HAGR  VF RF+GCNL           QC +CDTDF        
Sbjct: 9   YRVKEIFGPTLQGEGTHAGRACVFLRFAGCNL-----------QCSWCDTDFS---PEGA 54

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
            R   D++ + +    + G    R  ++TGGEP LQ D  L  AL   GF + +E+NGT 
Sbjct: 55  ERLRADEITERLLALDVHG---ARTVIVTGGEPALQWDQELADALRAAGFRVHMESNGTR 111

Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQEL-----KLVFPQ------VNVSPENYIGFDF 168
            P   +DW+ VSPK    G    +    E      KLV         +     +Y G D 
Sbjct: 112 PPRAPVDWLTVSPKVQFHGPREALFASAEAAVSECKLVVDDSVSHDTLAALEHHYEGAD- 170

Query: 169 ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               LQP      E++    ++   + P+WRLS+Q HK +G+
Sbjct: 171 --LLLQPCMDADYEQHLARTLTLIGERPRWRLSLQLHKIVGV 210


>gi|113953027|ref|YP_732046.1| organic radical activating protein [Synechococcus sp. CC9311]
 gi|113880378|gb|ABI45336.1| possible organic radical activating enzyme [Synechococcus sp.
           CC9311]
          Length = 202

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 64/216 (29%), Positives = 99/216 (45%), Gaps = 26/216 (12%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F +LQGEG H GR A F R +GC++            CR+CDT       +   
Sbjct: 5   LPVVETFHSLQGEGLHTGRSAFFIRLAGCDV-----------GCRWCDTKHSWPADSHPK 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF--EIAVETNGT 121
           R     + DL  E     E    + V+TGGEPL      L  A+   G    + +ET+G 
Sbjct: 54  RL----VKDLAIEATSAAETGAAFVVITGGEPLHHNLDELTAAIRS-GCSQPVHLETSGV 108

Query: 122 IEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQ-VNVSPENYIGFDFER--FSLQP 175
                  DWI +SPK     +   ++   ELK+V  +  ++     +     +  + LQP
Sbjct: 109 DRLSGAPDWITLSPKRHKPPRQDVVQACHELKVVVHEPADLLFAEVVAAQAPQANWLLQP 168

Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             G   +E   LA+    ++ +WRLS+Q+HK++G+R
Sbjct: 169 --GWDCKEGLQLAVGKVQKDQRWRLSMQSHKWLGVR 202


>gi|34540794|ref|NP_905273.1| hypothetical protein PG1057 [Porphyromonas gingivalis W83]
 gi|34397108|gb|AAQ66172.1| conserved hypothetical protein [Porphyromonas gingivalis W83]
          Length = 197

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/216 (31%), Positives = 98/216 (45%), Gaps = 33/216 (15%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF +LQGEG + GR AVF R +GCNL            C +CDTDF       G + 
Sbjct: 3   VNEIFHSLQGEGANTGRAAVFVRLAGCNL-----------ACPYCDTDFAQ-----GKKM 46

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
           +++++A  IE          R+ + TGGEP LQ+        ++ G+  A+ETNGT   P
Sbjct: 47  SLEEIARSIE------HYPTRFLIWTGGEPTLQLTEEATAYFHRLGYFQAIETNGTRPVP 100

Query: 126 QGIDWICVSPKAGCDLKIK-----GGQELKLVF-PQVNVSPENYIGFDFERFSLQPMDGP 179
           +GID+I  SPK G   K+K     G  E +        + P        + + + P+   
Sbjct: 101 KGIDYISCSPKTGAIGKLKENFPDGVGEFRFPLGSDTPLPPPIDELPTAQHYLVSPIFAG 160

Query: 180 F-----LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                         + +    P WRLS+Q HK I I
Sbjct: 161 DDAMEPDPSAITRCVEFVKAFPAWRLSIQMHKLIHI 196


>gi|329119485|ref|ZP_08248170.1| radical SAM domain protein [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464418|gb|EGF10718.1| radical SAM domain protein [Neisseria bacilliformis ATCC BAA-1200]
          Length = 212

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 100/222 (45%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  A+F R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAIFVRLGKCNL-----------ACSWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           ++++  L++++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 54  KFSMMPLSEIL---GRLKNYTARNIIITGGEPTIQPHLNTLLDALKNAGYRLCIETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPENYI--GFDFERFSLQP 175
             P  ID++  SPKA    K +        E+++V     +S    +       R+ L P
Sbjct: 111 PAPPQIDYVAASPKACYAAKYEKSCIAAADEVRIVADGDVISFCEALEQKIRARRYYLSP 170

Query: 176 MDGP--FLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
            +        +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212


>gi|284036696|ref|YP_003386626.1| organic radical activating enzyme [Spirosoma linguale DSM 74]
 gi|283815989|gb|ADB37827.1| organic radical activating enzyme [Spirosoma linguale DSM 74]
          Length = 216

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 62/215 (28%), Positives = 97/215 (45%), Gaps = 27/215 (12%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F T+QGEG H GR A F R  GC++            C +CD            
Sbjct: 20  LPVMEAFYTIQGEGAHTGRAAYFIRLGGCDV-----------GCHWCDVKESW-DADAHP 67

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           + ++D L           +  GR  V+TGGEPL+     L +AL   GF+  +ET+G  +
Sbjct: 68  KQSIDALV------KGALQYPGRLAVITGGEPLMHDLTALTEALQVAGFKTNIETSGVCQ 121

Query: 124 -PPQGIDWICVSPKAGCDLK---IKGGQELK-LVFPQVNVS-PENYIGF--DFERFSLQP 175
                 DWIC SPK          +   ELK +++ Q + +  E+++ +     +  LQ 
Sbjct: 122 TVTGSWDWICFSPKKFKKPNPAIYEKADELKVIIYNQSDFAFAESFVPYLRPDCKLFLQ- 180

Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +     E     + Y   +P+W++S+QTHKF+ I
Sbjct: 181 SEWGRSNEMLPRIVDYVKDHPQWQISLQTHKFLNI 215


>gi|163786121|ref|ZP_02180569.1| hypothetical protein FBALC1_13087 [Flavobacteriales bacterium
           ALC-1]
 gi|159877981|gb|EDP72037.1| hypothetical protein FBALC1_13087 [Flavobacteriales bacterium
           ALC-1]
          Length = 210

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 59/215 (27%), Positives = 91/215 (42%), Gaps = 27/215 (12%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           L  + E F T+QGEG H G  A F R  GC++            C +CD      +    
Sbjct: 15  LLPLMEEFYTIQGEGYHKGTAAYFVRIGGCDV-----------GCHWCDVK----ESWLP 59

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +   +   ++E       K     V+TGGEPL     PL + L  +G +  +ET+G  
Sbjct: 60  ELHPATETTKIVE----NAIKYSDIIVVTGGEPLTWDMGPLTEQLKAKGVQTHIETSGAY 115

Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVF---PQVNVSPENYIGFDFERF-SLQP 175
           +     DWIC+SPK      +       ELK +         + E     + +    LQP
Sbjct: 116 KLTGQWDWICLSPKKVKLPTEEIYDEAHELKCIIYNKDDFKFAEEQAAKINKDCILYLQP 175

Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            +    ++     + Y   NPKW++S+QTHK++ I
Sbjct: 176 -EWSKRDKMMPQIVDYVMANPKWKVSLQTHKYLNI 209


>gi|298370138|ref|ZP_06981454.1| radical SAM domain protein [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281598|gb|EFI23087.1| radical SAM domain protein [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 241

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 97/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 42  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 82

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           ++ +  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 83  KFGMMSLSDIL---GRLKTYAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCIETNGLK 139

Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K +        E+++V     V+             + L P
Sbjct: 140 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRIVADGDVVAFCENMERKIRARHYYLSP 199

Query: 176 MDG--PFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
            +        +T   I      P     W+LSVQTHK+ GI 
Sbjct: 200 CEQNSVMNIYDTIRQIGLLNSRPDASVHWQLSVQTHKWAGIE 241


>gi|212702071|ref|ZP_03310199.1| hypothetical protein DESPIG_00073 [Desulfovibrio piger ATCC 29098]
 gi|212674512|gb|EEB34995.1| hypothetical protein DESPIG_00073 [Desulfovibrio piger ATCC 29098]
          Length = 225

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 65/245 (26%), Positives = 95/245 (38%), Gaps = 54/245 (22%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI--- 57
           M+  ++ E F+TLQGE   AG  AVF RF GC +            C +CDT +      
Sbjct: 1   MRTLAVNEFFVTLQGEASFAGTPAVFVRFQGCPV-----------ACPWCDTQYAARLDG 49

Query: 58  -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
                         G        + L   I E         R+ VLTGGEP       L 
Sbjct: 50  ATLDFAAVRAKQGPGAGYADVEPEALLAAIREAG------PRHVVLTGGEPCRHDLTELT 103

Query: 105 QALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKI-------KGGQELKLVFP-- 154
             L   GF + +ET+GT+      D W+ +SPK      +       +   E+K      
Sbjct: 104 SRLVTEGFRVQIETSGTMPIRCHADVWVTLSPKLDMPGGLEVRQDAWERAGEIKFPVDTA 163

Query: 155 --------QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHK 206
                    + V+ +       E   LQP+     +E T L +   F + +WR+SVQ HK
Sbjct: 164 ADLARFEQALAVARQAASRPLTELVWLQPVSQ--GKEATRLCVEAAFAH-QWRVSVQVHK 220

Query: 207 FIGIR 211
           ++ +R
Sbjct: 221 YLDLR 225


>gi|218245972|ref|YP_002371343.1| hypothetical protein PCC8801_1116 [Cyanothece sp. PCC 8801]
 gi|218166450|gb|ACK65187.1| conserved hypothetical protein [Cyanothece sp. PCC 8801]
          Length = 205

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 58/215 (26%), Positives = 84/215 (39%), Gaps = 27/215 (12%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
            Y I E F ++QGEG   G  A F R +GC++            C +CD      +    
Sbjct: 10  TYPIVETFHSIQGEGVWMGVNAFFIRLAGCDV-----------HCPWCDQK----ESWPV 54

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             Y    L  L E             ++TGGEPL+    PL   L   G  + +ET+G+ 
Sbjct: 55  QPYPQQSLEALGEAAKRAN---PAIVIITGGEPLMHNLDPLTAQLRGLGLRVHLETSGSH 111

Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVF---PQVNVSPENYIGFDFERF-SLQP 175
                 DW+  SPK      +       ELK+V      +  +         +    LQP
Sbjct: 112 PFSGQFDWVTFSPKPFKLPHESIYPQVDELKVVITSQEDLQWAEHQAAQVPLKTIKYLQP 171

Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                  E+  L   Y   +P WR+S+Q HKF+G+
Sbjct: 172 EWNT--PESQQLIFDYVLHHPDWRISLQVHKFLGV 204


>gi|261867762|ref|YP_003255684.1| NrdG protein [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413094|gb|ACX82465.1| NrdG protein [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 209

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 104/224 (46%), Gaps = 35/224 (15%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y+I EIF +LQGEG + G   +F RF  CNL            C +CDT++   +  
Sbjct: 8   MPSYNIVEIFESLQGEGFNTGMPCIFVRFGKCNL-----------ACPWCDTNYNQFE-- 54

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
              R  + Q+ + +           +  ++TGGEP +  ++  L++ +   G+ +A+ETN
Sbjct: 55  ---RMTLAQVMEEVRS------FSSKNIIITGGEPTIVPNIEILLEQMKSEGYFLAIETN 105

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPENYI--GFDFERFS 172
           G    P  ID+I  SPK     K +        E+++V  +  ++    I      ER+ 
Sbjct: 106 GLKPIPPQIDYIATSPKRLYPHKYERRCIDFAHEVRIVADENVMAFCELIEDKIRAERYY 165

Query: 173 LQPMDG----PFLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211
           L P +       LE  T L  ++     PKW LSVQTHK IGI 
Sbjct: 166 LSPCEINGKMNLLETITQLGQLNQRVNRPKWLLSVQTHKLIGIE 209


>gi|219871538|ref|YP_002475913.1| anaerobic ribonucleotide reductase activating protein NrdG
           [Haemophilus parasuis SH0165]
 gi|219691742|gb|ACL32965.1| anaerobic ribonucleotide reductase activating protein NrdG
           [Haemophilus parasuis SH0165]
          Length = 204

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 103/221 (46%), Gaps = 35/221 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF TLQGEG + G  ++F RF  CNL            C +CDT++         
Sbjct: 6   YRIVEIFETLQGEGFNTGMPSIFIRFGKCNL-----------ACPWCDTNY--------N 46

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           +Y    LAD+++   +      +  ++TGGEP +Q D+  L+  L   G+ IA+ETNG  
Sbjct: 47  QYETKTLADIMQ---VVKGFSAKNIIITGGEPTIQPDLTYLLDTLKAEGYFIAIETNGLK 103

Query: 123 EPPQGIDWICVSPKA-----GCDLKIKGGQELKLVFPQVNVSPENYIG--FDFERFSLQP 175
             P  ID+I  SPK           I    E+++V     ++    I      ER+ L P
Sbjct: 104 PVPPQIDYIATSPKRLYQKNYLKHHIPFANEVRIVVDGDVLAFCEQIESTIKAERYYLSP 163

Query: 176 MDG----PFLEENTNLA-ISYCFQNPKWRLSVQTHKFIGIR 211
            +       LE  T L  ++     P+W+LS+QTHK  GI 
Sbjct: 164 CEENGVMNMLETITQLGKLNQRPNKPRWQLSIQTHKMAGIE 204


>gi|313886424|ref|ZP_07820143.1| radical SAM domain protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924105|gb|EFR34895.1| radical SAM domain protein [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 201

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 100/223 (44%), Gaps = 34/223 (15%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M+   + EIF +LQGEGG  GR  +F R SGCNL            C +CDTDF G Q  
Sbjct: 1   MQPLPVNEIFYSLQGEGGQMGRAMLFVRLSGCNLT-----------CDYCDTDFAGHQ-- 47

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
                   ++   +      G    R  + TGGEP L +    I   ++ G+  ++ETNG
Sbjct: 48  ---LMTASEILAQL------GSYPCRDILWTGGEPTLALREEHIAFFHEHGYRQSIETNG 98

Query: 121 TIEPPQGIDWICVSPKAGCDLKIK---------GGQELKLVFP-QVNVSPENYIGFDFER 170
           T   PQG+D++  SPK      ++         G  E++        + P      +  R
Sbjct: 99  TRPVPQGLDYVTCSPKPEAISGLRERFVDNYPDGIDEVRWPLQLGAPLPPPIEQLVEARR 158

Query: 171 FSLQPMD--GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           + + P++  G  +       + +   +P+WRLSVQ HK +G R
Sbjct: 159 YYVSPVEETGVEMSAVVARCMDFVLAHPEWRLSVQLHKLLGFR 201


>gi|94676807|ref|YP_588675.1| hypothetical protein BCI_0220 [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219957|gb|ABF14116.1| conserved hypothetical protein [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 223

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 92/238 (38%), Gaps = 49/238 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ----- 58
           Y I  I  TLQGEG  +G  A+F R  GC              C +CDT +   +     
Sbjct: 3   YPINSICQTLQGEGYFSGIPAIFIRLQGC-----------MVGCNWCDTKYTWHKNKIEQ 51

Query: 59  ------------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                        +     + + +  LI +Q        ++ V+TGGEP +   +PL   
Sbjct: 52  GIAKDIMLKKANSSVWSNLSEEDILALIVQQSWIA----KHVVITGGEPCMYDLLPLTYL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKLVFP-QVN 157
           L +  F   +ET+GT         W+ VSPK      ++          E+K V   Q +
Sbjct: 108 LEQYKFSCQIETSGTQSIKCTSNTWVTVSPKINKHYDVQILAQALSRSNEIKHVVSRQRD 167

Query: 158 VSPENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +   + +    +        LQP+    L   T L I  C     WRLS+Q HK++ I
Sbjct: 168 IKYLDELLLTLKDSKQRVICLQPLSQKKL--ATKLCIDTCIMR-NWRLSMQIHKYLNI 222


>gi|213963236|ref|ZP_03391493.1| radical SAM domain protein [Capnocytophaga sputigena Capno]
 gi|213954098|gb|EEB65423.1| radical SAM domain protein [Capnocytophaga sputigena Capno]
          Length = 210

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 27/217 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           ++  + E F +LQGEG + G  A F R  GC++            C +CD          
Sbjct: 14  EILPLMEAFYSLQGEGFYKGTAAYFIRLGGCDV-----------GCHWCDVKESW-AAEA 61

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
                VD +               +  ++TGGEPL+     L Q L   G    +ET+G 
Sbjct: 62  HPLVPVDTIV-------TDALAHSKTMIITGGEPLMWNLDLLTQKLRAAGARTHIETSGA 114

Query: 122 IEPPQGIDWICVSPKAGCDL---KIKGGQELKLV-FPQVNVSPENYIGFDFE---RFSLQ 174
                  DWIC+SPK         ++   ELK+V +   +      +           LQ
Sbjct: 115 HPLSGTFDWICLSPKKIKRPVGDVLQKANELKMVIYNNNDFLFAEEMAAQVSPDCLLYLQ 174

Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           P +     +     + Y   +P+W+ S+Q HK++ IR
Sbjct: 175 P-EWSKRNKVIPKIVDYVMAHPQWKASLQMHKYLDIR 210


>gi|255066205|ref|ZP_05318060.1| radical SAM domain protein [Neisseria sicca ATCC 29256]
 gi|255049415|gb|EET44879.1| radical SAM domain protein [Neisseria sicca ATCC 29256]
          Length = 212

 Score =  201 bits (511), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 100/222 (45%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           ++++  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 54  KFSMMSLSDIL---GRLKTYTVRNIIITGGEPTIQPHLDTLLDALKAEGYFLCIETNGLK 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K     I+   E+++V     V+             + L P
Sbjct: 111 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVAFCENMERKIRARHYYLSP 170

Query: 176 MD--GPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
            +  G     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQNGVMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212


>gi|87123419|ref|ZP_01079270.1| possible organic radical activating enzyme [Synechococcus sp.
           RS9917]
 gi|86169139|gb|EAQ70395.1| possible organic radical activating enzyme [Synechococcus sp.
           RS9917]
          Length = 202

 Score =  201 bits (511), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 64/216 (29%), Positives = 95/216 (43%), Gaps = 24/216 (11%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              + E F +LQGEG HAGR A F R  GC++            C +CDT          
Sbjct: 4   TLPVVETFHSLQGEGLHAGRSAFFIRLGGCDV-----------GCSWCDTKHSW-PAEAH 51

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGT 121
            + +VD LA               + VLTGGEPL      L  A+ +     + +ET+G 
Sbjct: 52  PKRSVDSLA---AATAEAAHAGAAFVVLTGGEPLHHQLDALTAAIRRICSLPVHLETSGV 108

Query: 122 IEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQ-VNVSPENYIGFDFER--FSLQP 175
                  DW+ +SPK     +   ++   ELK+V  +  ++     +     +  + LQP
Sbjct: 109 DPLSGAPDWVTLSPKRHRPPRAEVLQACDELKVVVHEPADLLFAEVVATQAPQATWLLQP 168

Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             G   E    LA      NP+WRLS+Q+HK++G+R
Sbjct: 169 --GWSSEAGQELATDMVRGNPRWRLSLQSHKWLGVR 202


>gi|121533882|ref|ZP_01665708.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
 gi|121307393|gb|EAX48309.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
          Length = 196

 Score =  200 bits (510), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 70/218 (32%), Positives = 97/218 (44%), Gaps = 31/218 (14%)

Query: 1   MK--LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
           MK   Y + EIF ++QGEG H G  A F R +GCNL           +CR+CDT      
Sbjct: 1   MKAIKYPVVEIFTSIQGEGTHMGLPAAFIRLAGCNL-----------RCRWCDTVHA-FD 48

Query: 59  GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
                    D++A  +           +  V+TGGEP L    PL+ AL+ RG  +A+ET
Sbjct: 49  PANATYLTPDEIATGLA---------PQLVVITGGEPTLHDLGPLVAALHARGKYVAIET 99

Query: 119 NGTIEPPQ--GIDWICVSPKAGCDLKIK-GGQELKLVF-PQVNVSPENYIGFDFERFSLQ 174
           NGT   P+  GIDW+  SPK      +     ELK V   +  +           R  LQ
Sbjct: 100 NGTNPIPEKWGIDWVTASPKPNSGYLLACQADELKYVVDDEFTLDCVADDAVPPGRIFLQ 159

Query: 175 PMDGPFLEENTNLAISYCFQNPK--WRLSVQTHKFIGI 210
                   E+   A +   +NP+   RL +Q HK +G+
Sbjct: 160 VES--ARPESAKKAFALVMENPERGLRLGIQLHKILGV 195


>gi|255033903|ref|YP_003084524.1| hypothetical protein Dfer_0088 [Dyadobacter fermentans DSM 18053]
 gi|254946659|gb|ACT91359.1| conserved hypothetical protein [Dyadobacter fermentans DSM 18053]
          Length = 193

 Score =  200 bits (510), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 65/211 (30%), Positives = 95/211 (45%), Gaps = 26/211 (12%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
            E F TLQGEG H+GR A F R  GC++            C +CD        +   +++
Sbjct: 1   MEAFYTLQGEGQHSGRAAYFIRLGGCDV-----------GCHWCDVKESW-DASIHPKFD 48

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQ 126
           ++ + D         +  GR  V+TGGEPL+     L  AL + GF+  +ET+G      
Sbjct: 49  INAIVD------GALQYPGRLAVITGGEPLMYNLDALTGALQEAGFKTNIETSGVYPFTG 102

Query: 127 GIDWICVSPKA---GCDLKIKGGQELKLVF---PQVNVSPENYIGFDFE-RFSLQPMDGP 179
             DW+C SPK          K   ELK +       + + E+      E    +QP +  
Sbjct: 103 HWDWVCFSPKKFKTPHPDIYKNADELKTIIYNKSDFDFAEEHAAKVSPECTLLMQP-EWS 161

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             +    L I Y   NPKW++S+QTHKF+ I
Sbjct: 162 KQDVMLPLIIDYIKDNPKWKMSLQTHKFMNI 192


>gi|332177919|gb|AEE13609.1| Radical SAM domain protein [Porphyromonas asaccharolytica DSM
           20707]
          Length = 201

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 100/223 (44%), Gaps = 34/223 (15%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M+   + EIF +LQGEGG  GR  +F R SGCNL            C +CDTDF G Q  
Sbjct: 1   MQPLPVNEIFYSLQGEGGQMGRAMLFVRLSGCNLT-----------CDYCDTDFAGHQ-- 47

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
                   ++   +      G    R  + TGGEP L +    I   ++ G+  ++ETNG
Sbjct: 48  ---LMTASEILAQL------GSYPCRDILWTGGEPTLALREEHIAFFHEHGYRQSIETNG 98

Query: 121 TIEPPQGIDWICVSPKAGCDLKIK---------GGQELKLVFP-QVNVSPENYIGFDFER 170
           T   PQG+D++  SPK      ++         G  E++        + P      +  R
Sbjct: 99  TRPMPQGLDYVTCSPKPEAISGLRERFVDNYPDGIDEVRWPLQLGAPLPPPIEQLAEARR 158

Query: 171 FSLQPMD--GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           + + P++  G  +       + +   +P+WRLSVQ HK +G R
Sbjct: 159 YYVSPVEETGVEMSAVVARCMDFVLAHPEWRLSVQLHKLLGFR 201


>gi|229497033|ref|ZP_04390738.1| NrdG protein [Porphyromonas endodontalis ATCC 35406]
 gi|229316135|gb|EEN82063.1| NrdG protein [Porphyromonas endodontalis ATCC 35406]
          Length = 212

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 65/219 (29%), Positives = 91/219 (41%), Gaps = 33/219 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + EIF +LQGEG   G   VF R S CNL           +C +CDTDF         
Sbjct: 16  LPVNEIFYSLQGEGAQVGLPMVFIRLSSCNL-----------RCSYCDTDFSS------- 57

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
            +    L  ++ E            + TGGEP L +   ++   +++G+  ++ETNGT  
Sbjct: 58  -FTPMSLEAIVAEL---ASFPTHNILWTGGEPTLHLTEEVVGFFHQKGYRQSIETNGTRP 113

Query: 124 PPQGIDWICVSPKAGCDLKI-----KGGQELKLVFPQVNVSPENYIGFDFER-FSLQPMD 177
            P+GID+I  S K      +      G  E +  F      P         R + L P+ 
Sbjct: 114 VPRGIDYITCSAKPESFPHLWENFPHGVDEWRFPFGASAPLPPAIESLPPARTYCLSPIY 173

Query: 178 GP-----FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            P              I Y  Q+P WRLS+Q HK IGI+
Sbjct: 174 EPGEAILQPPHALEECIEYIKQHPTWRLSIQLHKIIGIQ 212


>gi|225077247|ref|ZP_03720446.1| hypothetical protein NEIFLAOT_02302 [Neisseria flavescens
           NRL30031/H210]
 gi|224951391|gb|EEG32600.1| hypothetical protein NEIFLAOT_02302 [Neisseria flavescens
           NRL30031/H210]
          Length = 211

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 101/222 (45%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 12  YRIVEIFESLQGEGWNTGMPAVFIRLGKCNL-----------ACSWCDTDYL-------- 52

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           ++ +  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 53  KFGMMSLSDIL---GRLKTYTARNIIITGGEPTIQPHLDTLLNALKTEGYFLCIETNGLN 109

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS--PENYIGFDFERFSLQP 175
             P  ID++  SPKA    K     I+   E+++V     ++   E       + + L P
Sbjct: 110 PAPPQIDYVATSPKACYVAKYEFSCIEKADEVRIVADGDVIAFCQEMERKIRAQHYYLSP 169

Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
              DG     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 170 CEQDGVMNIYDTIRQIGVLNSRPDAPVHWQLSVQTHKWAGIE 211


>gi|293390438|ref|ZP_06634772.1| NrdG protein [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950972|gb|EFE01091.1| NrdG protein [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 224

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 104/224 (46%), Gaps = 35/224 (15%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y+I EIF +LQGEG + G   +F RF  CNL            C +CDT++   +  
Sbjct: 23  MPSYNIVEIFESLQGEGFNTGMPCIFVRFGKCNLT-----------CPWCDTNYNQFE-- 69

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
              R  + Q+ + +           +  ++TGGEP +  ++  L++ +   G+ +A+ETN
Sbjct: 70  ---RMTLAQVMEEVRS------FSSKNIIITGGEPTIVPNIEILLEQMKSEGYFLAIETN 120

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPENYI--GFDFERFS 172
           G    P  ID+I  SPK     K +        E+++V  +  ++    I      ER+ 
Sbjct: 121 GLKPIPPQIDYIATSPKRLYPNKYERRCIDFAHEVRIVADENVMAFCELIEDKIRAERYY 180

Query: 173 LQPMDG----PFLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211
           L P +       LE  T L  ++     PKW LSVQTHK IGI 
Sbjct: 181 LSPCEINGKMNLLETITQLGQLNQRVNRPKWLLSVQTHKLIGIE 224


>gi|225010558|ref|ZP_03701029.1| conserved hypothetical protein [Flavobacteria bacterium MS024-3C]
 gi|225005387|gb|EEG43338.1| conserved hypothetical protein [Flavobacteria bacterium MS024-3C]
          Length = 209

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 90/214 (42%), Gaps = 28/214 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F T+QGEG H G  A F R  GC++            C +CD      +     
Sbjct: 16  LPLMEAFYTIQGEGYHKGTAAYFIRVGGCDV-----------GCHWCDVK----ESWDAE 60

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           R+    +  +I++         +  V+TGGEPL     P+   L K G +  +ET+G   
Sbjct: 61  RHPPTAIEKIIQDA-----SPYKTIVITGGEPLTWDMGPVTAGLKKVGLQTHIETSGAYT 115

Query: 124 PPQGIDWICVSPKAG---CDLKIKGGQELKLVF---PQVNVSPENYIGF-DFERFSLQPM 176
                DWIC+SPK          K   ELK++      +  + E            LQP 
Sbjct: 116 LTGEWDWICLSPKKNKLPLAPIYKEAHELKVIVFNKHDLEFAQEQAAQVGPNCHLYLQP- 174

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    ++   + + +   NP W++S+QTHK++ I
Sbjct: 175 EWSVKDKVVPMIVDFVMANPAWKVSLQTHKYLNI 208


>gi|318040803|ref|ZP_07972759.1| putative organic radical activating protein [Synechococcus sp.
           CB0101]
          Length = 216

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 89/222 (40%), Gaps = 31/222 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F +LQGEG H+GR A F R  GC           S  C +CDT     Q     
Sbjct: 12  LPVVETFHSLQGEGLHSGRSAWFIRLGGC-----------SVGCSWCDTKHSWPQDV--- 57

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
            + +  L  L +E          + V+TGGEPL     PL +AL   G  + +ET+G   
Sbjct: 58  -HPLQSLEALQQEAQSAVANGAAFVVITGGEPLEHHLAPLCEALQPFGVPLHLETSGVGA 116

Query: 124 PPQGIDWICVSPKAGCDL---KIKGGQELKLVFPQVNVSPENYI-----------GFDFE 169
                 WI +SPK         +    ELK+V  +                         
Sbjct: 117 FTGAFAWITLSPKPHRPPTPEVLAACHELKVVVHEAADLAFAEAMAAASLNGRNNDQPAP 176

Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
              LQP  G        LAI Y   +P WRLS+Q+HK++G+R
Sbjct: 177 ALLLQP--GWQSTTGQQLAIDYVRSHPSWRLSLQSHKWLGVR 216


>gi|124026869|ref|YP_001015984.1| putative organic radical activating protein [Prochlorococcus
           marinus str. NATL1A]
 gi|123961937|gb|ABM76720.1| possible organic radical activating enzyme [Prochlorococcus marinus
           str. NATL1A]
          Length = 213

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 95/227 (41%), Gaps = 35/227 (15%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
               + E F +LQGEG HAGR A F R + C              C +CDT         
Sbjct: 3   SSLPVVECFHSLQGEGEHAGRSAYFIRLASC-----------KVGCPWCDTK----DSWN 47

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA-------LNKRGFEI 114
              +    L DL  +     E+   + V+TGGEPL      L +        L K+   I
Sbjct: 48  SELHPQQSLIDLSTQTAKAQEEGAAFVVITGGEPLHHNLDDLCKEIRKSTLNLEKKSIPI 107

Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKG---GQELKLVFPQVN-----VSPENYIGF 166
            +ET+G        DWI +SPK     ++      QELK+V           +  + I  
Sbjct: 108 HLETSGVDMLSGKPDWITLSPKRHSPPRLDNLLSCQELKVVIQNAEDLVFAKTMADSIKN 167

Query: 167 DFE---RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           + +   +  LQ   G   EE   LAI +   NP WRLS+QTHK++G+
Sbjct: 168 NGKIKPQLFLQ--AGWENEEGQTLAIKFVKNNPDWRLSMQTHKWLGV 212


>gi|319639356|ref|ZP_07994107.1| NrdG protein [Neisseria mucosa C102]
 gi|317399540|gb|EFV80210.1| NrdG protein [Neisseria mucosa C102]
          Length = 211

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 99/222 (44%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 12  YRIVEIFESLQGEGWNTGMPAVFIRLGKCNL-----------ACSWCDTDYL-------- 52

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           ++ +  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 53  KFGMMSLSDIL---GRLKTYTARNIIITGGEPTIQPHLDTLLNALKAEGYFLCIETNGLN 109

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS--PENYIGFDFERFSLQP 175
             P  ID++  SPKA    K     I+   E+++V     ++   E         + L P
Sbjct: 110 PAPPQIDYVATSPKACYAAKYEKSCIEKADEVRIVADGEVIAFCQEMERKIRARHYYLSP 169

Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
              DG     +T   I            W+LSVQTHK+ GI 
Sbjct: 170 CEQDGAMNIYDTIRQIGVLNSRADAPVHWQLSVQTHKWAGIE 211


>gi|261378237|ref|ZP_05982810.1| radical SAM domain protein [Neisseria cinerea ATCC 14685]
 gi|269145315|gb|EEZ71733.1| radical SAM domain protein [Neisseria cinerea ATCC 14685]
          Length = 212

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 97/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  A+F R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAIFVRLGKCNL-----------ACGWCDTDYLT------- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            +++  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 55  -FDIMSLSDIL---GRLKTYAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCIETNGLK 110

Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPK     K +        E+++V     V+            R+ L P
Sbjct: 111 PAPPQIDYVATSPKVCYADKYETNCIAEADEVRIVADGDVVAFCENMERKIRARRYYLSP 170

Query: 176 MDGP--FLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
            +        +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQNGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGIE 212


>gi|72383130|ref|YP_292485.1| putative organic radical activating protein [Prochlorococcus
           marinus str. NATL2A]
 gi|72002980|gb|AAZ58782.1| possible organic radical activating enzyme [Prochlorococcus marinus
           str. NATL2A]
          Length = 213

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 95/227 (41%), Gaps = 35/227 (15%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
               + E F +LQGEG HAGR A F R + C              C +CDT         
Sbjct: 3   SSLPVVECFHSLQGEGEHAGRSAYFIRLASC-----------KVGCPWCDTK----DSWN 47

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA-------LNKRGFEI 114
              +    L DL  +     E+   + V+TGGEPL      L +        L K+   I
Sbjct: 48  SELHPQQSLIDLSTQTAKAQEEGAAFVVITGGEPLHHNLDDLCKEIRKSTLNLEKKSIPI 107

Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKG---GQELKLVFPQVN-----VSPENYIGF 166
            +ET+G        DWI +SPK     ++      QELK+V           +  + I  
Sbjct: 108 HLETSGVDMLSGKPDWITLSPKRHSPPRLDNLLSCQELKVVIQNAEDLLFAKTMADSIKN 167

Query: 167 DFE---RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           + +   +  LQ   G   EE   LAI +   NP WRLS+QTHK++G+
Sbjct: 168 NGKIKPQLFLQ--AGWENEEGQTLAIKFVKNNPDWRLSMQTHKWLGV 212


>gi|296315126|ref|ZP_06865067.1| radical SAM domain protein [Neisseria polysaccharea ATCC 43768]
 gi|296838043|gb|EFH21981.1| radical SAM domain protein [Neisseria polysaccharea ATCC 43768]
          Length = 212

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 96/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
            +++  L+D++           R  ++TGGEP +Q     L+  L   G+ + +ETNG  
Sbjct: 55  -FSMMSLSDIL---GRLKAYAARNIIITGGEPTIQPHLDALLDTLKAEGYFLCLETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K     I+   E+++V     V              + L P
Sbjct: 111 PAPPQIDYVATSPKAYYAAKYEKSCIETADEVRIVADGDVVGFCENMERKIRARHYYLSP 170

Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
              DG     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212


>gi|152979671|ref|YP_001345300.1| radical SAM domain-containing protein [Actinobacillus succinogenes
           130Z]
 gi|150841394|gb|ABR75365.1| Radical SAM domain protein [Actinobacillus succinogenes 130Z]
          Length = 208

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 101/221 (45%), Gaps = 35/221 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  A+F RF  CNL            C +CDT +         
Sbjct: 10  YPIVEIFESLQGEGANTGMPAIFIRFGKCNL-----------ACPWCDTPY--------N 50

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            +     + +I++         +  ++TGGEP +Q  +  L++ L + G+ +A+ETNG  
Sbjct: 51  EFAALTFSQIIQK---VRSFSAKNIIITGGEPTIQPRLSLLLEQLKQEGYFLAIETNGLK 107

Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPENYI--GFDFERFSLQP 175
             P  ID+I VSPK     K          E+++V  +  +    +I        + L P
Sbjct: 108 TVPSQIDYIAVSPKGLYWEKYHSRCISFAHEVRIVADENVLKFCAFIEDKIKANHYYLSP 167

Query: 176 M--DGPFL--EENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211
              DG     E  T L  ++     PKW+LS+QTHK IGI 
Sbjct: 168 CETDGKMNLYETVTLLGQLNQRANRPKWQLSLQTHKLIGIE 208


>gi|254431688|ref|ZP_05045391.1| radical SAM [Cyanobium sp. PCC 7001]
 gi|197626141|gb|EDY38700.1| radical SAM [Cyanobium sp. PCC 7001]
          Length = 209

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/218 (27%), Positives = 90/218 (41%), Gaps = 27/218 (12%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F +LQGEG H G+ A F R +GC              C +CDT           
Sbjct: 9   LPVVEAFHSLQGEGLHTGQSAFFIRLAGC-----------RVGCSWCDTKHSWPMAGHAE 57

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
                 L+ L +      +    + V+TGGEPL      L   L   G  + +ET+G   
Sbjct: 58  W----SLSGLADAALAARQAGAGFVVITGGEPLHHDLTALCALLRSHGLRLHLETSGVEP 113

Query: 124 PPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVN-------VSPENYIGFDFERFSL 173
               +DWI +SPK     +   I+   ELK+V    +       ++ +     +     L
Sbjct: 114 LRGQVDWIVLSPKRHQPPRDDLIRLCNELKVVVHSHDDLDFALAMARQANASGNHPALLL 173

Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           QP  G    E   LA+ +   +  WRLS+Q+HK++ IR
Sbjct: 174 QP--GWESTEGQRLALDFVRSHADWRLSLQSHKWLAIR 209


>gi|261401297|ref|ZP_05987422.1| radical SAM domain protein [Neisseria lactamica ATCC 23970]
 gi|269208675|gb|EEZ75130.1| radical SAM domain protein [Neisseria lactamica ATCC 23970]
          Length = 212

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 55  -FGMMSLSDIL---GRLKAYAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K +        E+++V     ++             + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRIVADGDVLAFCENMERKIRARHYYLSP 170

Query: 176 MDGP--FLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
            +        +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212


>gi|59800591|ref|YP_207303.1| hypothetical protein NGO0132 [Neisseria gonorrhoeae FA 1090]
 gi|59717486|gb|AAW88891.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
          Length = 335

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 97/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 136 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 177

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 178 -FGMMSLSDIL---GRLKTYAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLK 233

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K     I+   E+++V     V              + L P
Sbjct: 234 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDAVGFCENMERKIRAHHYYLSP 293

Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
              DG     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 294 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 335


>gi|291044537|ref|ZP_06570246.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291011431|gb|EFE03427.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 267

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 97/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 68  YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 109

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++    I      R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 110 -FGMMSLSDILGRLKI---YAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 165

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K     I+   E+++V     V              + L P
Sbjct: 166 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVGFCENMERKIRAHHYYLSP 225

Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
              DG     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 226 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 267


>gi|187251045|ref|YP_001875527.1| putative 6- pyruvoyltetrahydropterin 2-reductase [Elusimicrobium
           minutum Pei191]
 gi|186971205|gb|ACC98190.1| Putative 6- pyruvoyltetrahydropterin 2-reductase [Elusimicrobium
           minutum Pei191]
          Length = 195

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 105/213 (49%), Gaps = 30/213 (14%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + EIF +LQGEG + G  AVF R SGC              C FCDTDF         
Sbjct: 6   FKLTEIFYSLQGEGMYTGTAAVFVRLSGC-----------LMGCSFCDTDF--------K 46

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
              V    ++I+E     +   +  ++TGGEP  Q    LI++L + G ++ +ETNG+I 
Sbjct: 47  ENFVMTSEEIIKE---VKKYPSKIVIITGGEPAEQDICALIKSLKQAGLKVHIETNGSIY 103

Query: 124 PP-QGIDWICVSPKAGCDLKI-KGGQELKLVFPQV-NVSP-ENYIGFDFE--RFSLQPMD 177
              QG+D + VSPK   D  + K    +K+V  Q  ++S  + Y  +  E     LQP  
Sbjct: 104 FDAQGVDNLTVSPKTYVDPNMLKSAHVIKIVVGQDTDISDLKKYFNYASEGRLIYLQPES 163

Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               +EN +L +    +NP  RLS+QTHKF  I
Sbjct: 164 NK--QENIDLCVKLIKENPFLRLSLQTHKFAKI 194


>gi|294669279|ref|ZP_06734358.1| radical SAM domain protein [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291308689|gb|EFE49932.1| radical SAM domain protein [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 212

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 96/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           ++ +  L+D++           R  ++TGGEP +Q  +  L+      G+ + +ETNG  
Sbjct: 54  KFGMMSLSDIL---GRLKTYAARNVIITGGEPTIQPHLDTLLDTFKAEGYFLCIETNGLK 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K     I    E+++V     V+             + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYETNCITEADEVRIVADGDVVAFCENMERKIRARHYYLSP 170

Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
              DG     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPAHWQLSVQTHKWAGIE 212


>gi|52425912|ref|YP_089049.1| NrdG protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307964|gb|AAU38464.1| NrdG protein [Mannheimia succiniciproducens MBEL55E]
          Length = 224

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 100/221 (45%), Gaps = 35/221 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G   +F RF  CNL            C +CDTD+         
Sbjct: 26  YPIVEIFESLQGEGFNTGMPCIFVRFGKCNL-----------ACPWCDTDY--------E 66

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA-LNKRGFEIAVETNGTI 122
           R+    L  ++E+         +  ++TGGEP +Q ++ L+ A   + G+ +A+ETNG  
Sbjct: 67  RFEYRTLQQIVEK---VRSFSAKNIIITGGEPTIQPNISLLLAQFKRDGYFLAIETNGLR 123

Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQV--NVSPENYIGFDFERFSLQP 175
             P  ID+I  SPKA    K +        E+++V      N   +       ER+ L P
Sbjct: 124 AVPPQIDYISASPKAMYAEKYRRRCIDFAHEVRIVMDADAENFCQQIEQKIRAERYYLSP 183

Query: 176 --MDGPFLEENTNLAISYCFQNPK---WRLSVQTHKFIGIR 211
             ++G      T   +    Q P    W+LS+QTHK  GI 
Sbjct: 184 CEIEGKMNLLETIALLGKLNQRPNKPKWQLSIQTHKLAGIE 224


>gi|319945214|ref|ZP_08019476.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Lautropia mirabilis ATCC 51599]
 gi|319741784|gb|EFV94209.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Lautropia mirabilis ATCC 51599]
          Length = 244

 Score =  198 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 100/221 (45%), Gaps = 35/221 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF TLQGEG + G  +VF RF  CNL            C +CDTD+         
Sbjct: 46  YRIVEIFETLQGEGFNTGMPSVFIRFGKCNL-----------ACPWCDTDY--------N 86

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           R+    L D++ +         R  ++TGGEP +Q  +  L+ +L   G  +A+ETNG  
Sbjct: 87  RFGTMTLGDILAK---VRTFSARNVIITGGEPTIQPHLERLLDSLKAEGHFLAIETNGLK 143

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQV--NVSPENYIGFDFERFSLQP 175
             P  ID+I  SPK           IK   E+++V      +   +       +R+ L P
Sbjct: 144 PVPPQIDYIATSPKRLYQQAYQKRHIKFAHEVRIVVDGDVRDFCAQIEDSIQADRYYLSP 203

Query: 176 MDG----PFLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211
            +       LE  T L  ++     P+W+LS+QTHK  GI 
Sbjct: 204 CEVDGRMNMLETITQLGQLNQRPGRPRWQLSIQTHKLAGIE 244


>gi|262341203|ref|YP_003284058.1| radical SAM domain-containing protein [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272540|gb|ACY40448.1| radical SAM domain-containing protein [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 201

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 66/219 (30%), Positives = 98/219 (44%), Gaps = 28/219 (12%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  + IKE F ++QGEG + G  A F RF GCN            +C +CDT     +  
Sbjct: 1   MISFPIKESFYSIQGEGFYYGMAAFFIRFEGCN-----------IKCDWCDTK----ESW 45

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           K  + +   + ++I           +  V+TGGEP++     L + L K+G+ I VET+G
Sbjct: 46  KIKKKDFIPIHEIIN---HISNYTVKNIVITGGEPMMWNLYHLTKILKKKGYRIHVETSG 102

Query: 121 TIEPPQG-IDWICVSPKA---GCDLKIKGGQELKLVFPQVN-----VSPENYIGFDFERF 171
           T    +  +DWI VSPK      +   K   ELK++               ++       
Sbjct: 103 TYPIEEKYMDWITVSPKKIKLPLEENYKKTNELKIIISNEKDFLFAEEQAIHVKTTNCFL 162

Query: 172 SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            LQP +           ISY  +NPKWR+S+Q HK + I
Sbjct: 163 FLQP-EWTNFVTIFPKIISYIKENPKWRISLQIHKMLNI 200


>gi|159904363|ref|YP_001551707.1| putative organic radical activating protein [Prochlorococcus
           marinus str. MIT 9211]
 gi|159889539|gb|ABX09753.1| possible organic radical activating enzyme [Prochlorococcus marinus
           str. MIT 9211]
          Length = 226

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 98/240 (40%), Gaps = 48/240 (20%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
               + E F ++QGEG HAGR A F R + CN+            C +CDT       + 
Sbjct: 3   TTLPVVESFHSIQGEGAHAGRSAFFIRLAQCNV-----------GCEWCDTKESWSSISH 51

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN-------KRGFEI 114
             +     +  L++E  I   K   + V+TGGEPL     PL  A+             I
Sbjct: 52  PKK----TIDSLVQETTIAKSKGASFLVITGGEPLHHNLNPLCNAIKNNINSCGDNAIPI 107

Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQELKLV--------FPQVNVSPENY 163
            +ET+G        DWI +SPK     K   ++  QE+K++        F +       +
Sbjct: 108 HLETSGVHHMSGAPDWITLSPKRHFPPKEELLEACQEIKVIIHSKEDILFAEEMAHRSIH 167

Query: 164 IGFDFER-------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              +  +               LQP  G        LAI Y  +NP+WRLS+QTHK++ I
Sbjct: 168 AKKNAYKSRVSTKQSLIKPLLFLQP--GWGHSMGQKLAIEYVIKNPQWRLSLQTHKWLAI 225


>gi|218767651|ref|YP_002342163.1| hypothetical protein NMA0707 [Neisseria meningitidis Z2491]
 gi|121051659|emb|CAM07962.1| hypothetical protein NMA0707 [Neisseria meningitidis Z2491]
 gi|308388712|gb|ADO31032.1| hypothetical protein NMBB_0569 [Neisseria meningitidis alpha710]
          Length = 212

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 97/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 55  -FGMMSLSDIL---GRLKAYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K     I+   E+++V     V+             + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVAFCENMERKIRAHHYYLSP 170

Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
              DG     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212


>gi|268596173|ref|ZP_06130340.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268549961|gb|EEZ44980.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
          Length = 267

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 96/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 68  YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 109

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 110 -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 165

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K     I+   E+++V     V              + L P
Sbjct: 166 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVGFCENMERKIRAHHYYLSP 225

Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
              DG     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 226 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 267


>gi|325127637|gb|EGC50553.1| radical SAM domain protein [Neisseria meningitidis N1568]
 gi|325135881|gb|EGC58493.1| radical SAM domain protein [Neisseria meningitidis M0579]
 gi|325202682|gb|ADY98136.1| radical SAM domain protein [Neisseria meningitidis M01-240149]
 gi|325207572|gb|ADZ03024.1| radical SAM domain protein [Neisseria meningitidis NZ-05/33]
          Length = 212

 Score =  197 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 55  -FGMMSLSDIL---GRLKAYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K +        E+++V     ++             + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYENSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSP 170

Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
              DG     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212


>gi|240114982|ref|ZP_04729044.1| hypothetical protein NgonPID1_01797 [Neisseria gonorrhoeae PID18]
 gi|260441203|ref|ZP_05795019.1| hypothetical protein NgonDG_08991 [Neisseria gonorrhoeae DGI2]
 gi|268600650|ref|ZP_06134817.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268584781|gb|EEZ49457.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
          Length = 212

 Score =  197 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 97/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++    I      R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 55  -FGMMSLSDILGRLKI---YAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K     I+   E+++V     V              + L P
Sbjct: 111 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVGFCENMERKIRAHHYYLSP 170

Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
              DG     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212


>gi|313668991|ref|YP_004049275.1| hypothetical protein NLA_17110 [Neisseria lactamica ST-640]
 gi|313006453|emb|CBN87916.1| conserved hypothetical protein [Neisseria lactamica 020-06]
          Length = 212

 Score =  197 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 97/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 55  -FGMMSLSDIL---GRLKTYTVRNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K     I+   E+++V     ++             + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVLAFCENMERKIRARHYYLSP 170

Query: 176 MDGP--FLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
            +        +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212


>gi|16330304|ref|NP_441032.1| hypothetical protein sll2011 [Synechocystis sp. PCC 6803]
 gi|1652793|dbj|BAA17712.1| sll2011 [Synechocystis sp. PCC 6803]
          Length = 208

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 62/217 (28%), Positives = 95/217 (43%), Gaps = 31/217 (14%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I E F +LQGEG  AG  A F R  GC++            C +CD        T   
Sbjct: 14  YPIAETFHSLQGEGAWAGGNAFFIRLGGCDV-----------HCPWCDQK-----ETWPT 57

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           +++  Q    + +Q +T +    + V+TGGEPL+    PL + L  +G  + +ET+G   
Sbjct: 58  QHHPRQTVTELVQQAVTAK--PSFVVITGGEPLMHDLQPLCKTLKNQGLRLHLETSGAYP 115

Query: 124 PPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP----- 175
                DWI +SPK              ELK++  Q     E++   + E   + P     
Sbjct: 116 LTGQFDWITLSPKPYKLPQAAIYPLANELKVIISQ----DEDFDWAEMEARKISPGTPLY 171

Query: 176 -MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                  E       +Y   + +WRLS+QTHK++G+R
Sbjct: 172 LQAEWETEAMNEKIFAYILTHSQWRLSLQTHKYLGVR 208


>gi|240013450|ref|ZP_04720363.1| hypothetical protein NgonD_02169 [Neisseria gonorrhoeae DGI18]
 gi|240015889|ref|ZP_04722429.1| hypothetical protein NgonFA_01772 [Neisseria gonorrhoeae FA6140]
 gi|240080029|ref|ZP_04724572.1| hypothetical protein NgonF_01775 [Neisseria gonorrhoeae FA19]
 gi|240112239|ref|ZP_04726729.1| hypothetical protein NgonM_01409 [Neisseria gonorrhoeae MS11]
 gi|240117266|ref|ZP_04731328.1| hypothetical protein NgonPID_02214 [Neisseria gonorrhoeae PID1]
 gi|240120521|ref|ZP_04733483.1| hypothetical protein NgonPI_01854 [Neisseria gonorrhoeae PID24-1]
 gi|240122820|ref|ZP_04735776.1| hypothetical protein NgonP_02565 [Neisseria gonorrhoeae PID332]
 gi|240125015|ref|ZP_04737901.1| hypothetical protein NgonSK_02119 [Neisseria gonorrhoeae SK-92-679]
 gi|254493044|ref|ZP_05106215.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268598297|ref|ZP_06132464.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268602962|ref|ZP_06137129.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268681434|ref|ZP_06148296.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268683601|ref|ZP_06150463.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|226512084|gb|EEH61429.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268582428|gb|EEZ47104.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268587093|gb|EEZ51769.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268621718|gb|EEZ54118.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268623885|gb|EEZ56285.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
          Length = 212

 Score =  197 bits (502), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 96/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 55  -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K     I+   E+++V     V              + L P
Sbjct: 111 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVGFCENMERKIRAHHYYLSP 170

Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
              DG     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212


>gi|309379630|emb|CBX21801.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 212

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 55  -FGMMSLSDIL---GRLKTYTVRNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLK 110

Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K +        E+++V     ++             + L P
Sbjct: 111 PAPPQIDYVATSPKAYYAAKYETNCIAEADEVRIVADGDVLAFCENMERKIRARHYYLSP 170

Query: 176 MDGP--FLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
            +        +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212


>gi|165976520|ref|YP_001652113.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876621|gb|ABY69669.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 210

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + I EIF +LQGEG + G   +F R   CNL            C +CDT++      +  
Sbjct: 11  FPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY-----NEYE 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           ++++ ++ + ++          ++ ++TGGEP +  ++  L+      G+ +A+ETNG  
Sbjct: 55  KWSLAKILERVKS------YSAKHIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNGLK 108

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS---PENYIGFDFERFSLQ 174
             P+ ID+I  SPK     K     I    E+++V  + +V     +       E + L 
Sbjct: 109 AVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVVDKGDVQSFCEQIETQITAEHYYLS 168

Query: 175 PM--DGP--FLEENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211
           P   DG    LE  T L I +     PKW+LS+QTHK +GI 
Sbjct: 169 PCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGIE 210


>gi|240127528|ref|ZP_04740189.1| hypothetical protein NgonS_02574 [Neisseria gonorrhoeae SK-93-1035]
 gi|268685904|ref|ZP_06152766.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268626188|gb|EEZ58588.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 212

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 96/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 55  -FGMMSLSDIL---GRLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K     I+   E+++V     V              + L P
Sbjct: 111 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDAVGFCENMERKIRAHHYYLSP 170

Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
              DG     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212


>gi|261393100|emb|CAX50697.1| conserved hypothetical protein [Neisseria meningitidis 8013]
 gi|325203620|gb|ADY99073.1| radical SAM domain protein [Neisseria meningitidis M01-240355]
          Length = 212

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 97/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 55  -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K     I+   E+++V     ++             + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSP 170

Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
              DG     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212


>gi|254804413|ref|YP_003082634.1| hypothetical protein NMO_0411 [Neisseria meningitidis alpha14]
 gi|254667955|emb|CBA04204.1| conserved hypothetical protein [Neisseria meningitidis alpha14]
          Length = 212

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 55  -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K     I+   E+++V     V+             + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVAFCENMERKIRAHHYYLSP 170

Query: 176 MDGP--FLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
            +        +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212


>gi|261364119|ref|ZP_05977002.1| radical SAM domain protein [Neisseria mucosa ATCC 25996]
 gi|288567697|gb|EFC89257.1| radical SAM domain protein [Neisseria mucosa ATCC 25996]
          Length = 212

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 97/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYL-------- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           ++ +  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 54  KFGMMSLSDIL---GRLKTYTARNIIITGGEPTIQPHLDTLLDALKAEGYFLCIETNGLK 110

Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K +        E+++V     V+             + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRIVADGDVVAFCENMERKIRARYYYLSP 170

Query: 176 MDGP--FLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
            +        +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQNGAMNIYDTIHQIGILNSRPDAPVHWQLSVQTHKWAGIE 212


>gi|21672674|ref|NP_660741.1| hypothetical protein BUsg401 [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25091592|sp|Q8K9D9|Y401_BUCAP RecName: Full=Uncharacterized protein BUsg_401
 gi|21623312|gb|AAM67952.1| hypothetical 25.0 kDa protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 219

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 100/234 (42%), Gaps = 43/234 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y I EIF T+QGEG + G  ++F R  GC +            C++CDT +         
Sbjct: 3   YPINEIFQTIQGEGYYTGTPSIFIRLQGCPV-----------HCKWCDTKYTWKCNNEDQ 51

Query: 57  -------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
                  ++     +++   + ++I    I      ++ V+TGGEP L   + + + L K
Sbjct: 52  ISYEKIIMKKKSNRKWSYMNVKEIILIIKIKKW-TAKHIVITGGEPCLYNLLEITKELEK 110

Query: 110 RGFEIAVETNGTIEPPQGI-DWICVSPKAG---CDLKIKGGQELKLVFPQVNVSPENYIG 165
             ++  +ET+GT      +  WI +SPK         I    E+K  +P +      Y+ 
Sbjct: 111 EDYKCQIETSGTELIKCSLNTWITLSPKINKKTLKTSILRSNEIK--YPVLKKEDLFYLN 168

Query: 166 FDFER--------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
              ++          LQP+     EE  N+ I  C     WRLSVQ HK++ IR
Sbjct: 169 SILKKIKNKKHNLIFLQPISQ--NEEALNICIKTCIIK-NWRLSVQIHKYLKIR 219


>gi|293397670|ref|ZP_06641876.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
 gi|291611616|gb|EFF40685.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
          Length = 241

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 97/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 42  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 83

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+ AL   G+ + +ETNG  
Sbjct: 84  -FGMMSLSDIL---GRLKTYAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLK 139

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K     I+   E+++V     V              + L P
Sbjct: 140 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDAVGFCENMERKIRAHHYYLSP 199

Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
              DG     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 200 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 241


>gi|325133661|gb|EGC56318.1| radical SAM domain protein [Neisseria meningitidis M13399]
 gi|325143843|gb|EGC66158.1| radical SAM domain protein [Neisseria meningitidis M01-240013]
 gi|325206619|gb|ADZ02072.1| radical SAM domain protein [Neisseria meningitidis M04-240196]
          Length = 212

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 97/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 55  -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K     I+   E+++V     V+             + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVAFCENMERKIRAHHYYLSP 170

Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
              DG     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGIE 212


>gi|313203030|ref|YP_004041687.1| radical sam domain protein [Paludibacter propionicigenes WB4]
 gi|312442346|gb|ADQ78702.1| Radical SAM domain protein [Paludibacter propionicigenes WB4]
          Length = 209

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/218 (29%), Positives = 102/218 (46%), Gaps = 28/218 (12%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           L ++ EIF ++QGEG +AGR AVF R S CN             C +CDTD+     +KG
Sbjct: 9   LLNVVEIFHSIQGEGANAGRSAVFVRLSNCN-----------KNCWYCDTDW-----SKG 52

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
              +V Q+   + +     +      + TGGEP LQ+   ++   ++  +   +ETNGT 
Sbjct: 53  ETMSVSQILAEVNKFVGKKDYPNNLIIWTGGEPTLQLTDEILSHFSE--YYNCIETNGTN 110

Query: 123 EPPQGIDWICVSPKAGCDL---KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG- 178
             P  I +I  SPK   ++     K   E +      +V P+       + + + P+   
Sbjct: 111 PVPSLIKYISCSPKVKPEVLRKNFKHVNEFRYPIGDGDVLPDIAELPAADNYIVSPIFLG 170

Query: 179 ------PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                   ++EN   AI +  +NP+WRLS+Q HK + I
Sbjct: 171 EAKKRFEQVDENVKYAIDFVKKNPRWRLSLQLHKLLNI 208


>gi|123969432|ref|YP_001010290.1| putative organic radical activating protein [Prochlorococcus
           marinus str. AS9601]
 gi|123199542|gb|ABM71183.1| possible organic radical activating enzyme [Prochlorococcus marinus
           str. AS9601]
          Length = 225

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 103/241 (42%), Gaps = 48/241 (19%)

Query: 1   MKL---YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI 57
           MK+     + E F +LQGEG HAG+ A F R +GC              C +CDT     
Sbjct: 1   MKMTNFLPLVEQFHSLQGEGYHAGKSAFFVRLAGC-----------KVGCSWCDTKNSWD 49

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------R 110
           +     ++    +  +I+   I  +K   +CV+TGGEPL        +A+ K       +
Sbjct: 50  E----KKHPSISIEKIIDRIKIARKKGASFCVITGGEPLQHNLDNFCKAIKKMTMGEEQK 105

Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQEL-----------------K 150
             +I +ET+G        DWI +SPK     K   +K   E+                 K
Sbjct: 106 PIKIHIETSGVNSISGSYDWITLSPKRHSPPKNYFLKNCNEIKIIINEIEDIEFAIQIKK 165

Query: 151 LVFPQVNVSP-ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
               Q  +S  E+ +  + + F LQP          +LAI +   NP W+LS+QTHK++ 
Sbjct: 166 ETLKQHQLSKGEDGLKKEDKIFYLQPA--WNNANGFSLAIDFVKNNPDWKLSLQTHKYLK 223

Query: 210 I 210
           I
Sbjct: 224 I 224


>gi|91070512|gb|ABE11419.1| putative organic radical activating enzyme [uncultured
           Prochlorococcus marinus clone HOT0M-3E5]
          Length = 225

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 103/241 (42%), Gaps = 48/241 (19%)

Query: 1   MKL---YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI 57
           MK+     + E F +LQGEG HAG+ A F R +GC              C +CDT     
Sbjct: 1   MKMTNFLPLVEQFHSLQGEGYHAGKSAFFIRLAGC-----------KVGCSWCDTKNSWD 49

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------R 110
           +     ++    +  +I+   I  +K   +CV+TGGEPL        +A+ K       +
Sbjct: 50  E----KKHPSISIEKIIDRIKIARKKGASFCVITGGEPLQHNLDNFCKAIKKMTMGEEQK 105

Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQ----------------ELKL 151
             +I +ET+G        DWI +SPK     K   +K                   ++K 
Sbjct: 106 PMKIHIETSGVNSISGSYDWITLSPKRHSPPKNYFLKNCNEIKIIINEIEDIEFAIQIKN 165

Query: 152 -VFPQVNVSP-ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
               Q  +S  E+ +  + + F LQP          +LAI +   NP W+LS+QTHK++ 
Sbjct: 166 ETLKQYQISKSEDGLKKEDKIFYLQPA--WNNANGFSLAIDFVKNNPDWKLSLQTHKYLK 223

Query: 210 I 210
           I
Sbjct: 224 I 224


>gi|319409907|emb|CBY90232.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
          Length = 212

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 55  -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K +        E+++V     ++             + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYENSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSP 170

Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
              DG     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGIE 212


>gi|194097763|ref|YP_002000804.1| hypothetical protein NGK_0179 [Neisseria gonorrhoeae NCCP11945]
 gi|239998266|ref|ZP_04718190.1| hypothetical protein Ngon3_02112 [Neisseria gonorrhoeae 35/02]
 gi|193933053|gb|ACF28877.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|317163547|gb|ADV07088.1| hypothetical protein NGTW08_0112 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 212

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 55  -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLK 110

Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K +        E+++V     ++             + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRIVADGDVLAFCENMERKIRARHYYLSP 170

Query: 176 MD--GPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
            +  G     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQNGVMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212


>gi|32035298|ref|ZP_00135305.1| COG0602: Organic radical activating enzymes [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208571|ref|YP_001053796.1| hypothetical protein APL_1099 [Actinobacillus pleuropneumoniae L20]
 gi|190150424|ref|YP_001968949.1| hypothetical protein APP7_1155 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303253329|ref|ZP_07339478.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307246015|ref|ZP_07528097.1| hypothetical protein appser1_12160 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307248119|ref|ZP_07530147.1| hypothetical protein appser2_11000 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307250350|ref|ZP_07532299.1| hypothetical protein appser4_11310 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307254996|ref|ZP_07536814.1| hypothetical protein appser9_12300 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259432|ref|ZP_07541157.1| hypothetical protein appser11_12290 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307263767|ref|ZP_07545373.1| hypothetical protein appser13_11780 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126097363|gb|ABN74191.1| hypothetical protein APL_1099 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|189915555|gb|ACE61807.1| hypothetical protein APP7_1155 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302648011|gb|EFL78218.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306852950|gb|EFM85173.1| hypothetical protein appser1_12160 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306855296|gb|EFM87471.1| hypothetical protein appser2_11000 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306857625|gb|EFM89732.1| hypothetical protein appser4_11310 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306861869|gb|EFM93845.1| hypothetical protein appser9_12300 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866368|gb|EFM98231.1| hypothetical protein appser11_12290 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306870888|gb|EFN02626.1| hypothetical protein appser13_11780 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 210

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + I EIF +LQGEG + G   +F R   CNL            C +CDT++      +  
Sbjct: 11  FPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY-----NEYE 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           +++V ++ + ++          +  ++TGGEP +  ++  L+      G+ +A+ETNG  
Sbjct: 55  KWSVAKILERVKS------YSAKNIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNGLK 108

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS---PENYIGFDFERFSLQ 174
             P+ ID+I  SPK     K     I    E+++V  + +V     +       E + L 
Sbjct: 109 AVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVVDKGDVQSFCEQIETQITAEHYYLS 168

Query: 175 PM--DGP--FLEENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211
           P   DG    LE  T L I +     PKW+LS+QTHK +GI 
Sbjct: 169 PCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGIE 210


>gi|121634324|ref|YP_974569.1| hypothetical protein NMC0468 [Neisseria meningitidis FAM18]
 gi|120866030|emb|CAM09768.1| hypothetical protein NMC0468 [Neisseria meningitidis FAM18]
 gi|325129656|gb|EGC52471.1| radical SAM domain protein [Neisseria meningitidis OX99.30304]
 gi|325131671|gb|EGC54376.1| radical SAM domain protein [Neisseria meningitidis M6190]
 gi|325137687|gb|EGC60264.1| radical SAM domain protein [Neisseria meningitidis ES14902]
 gi|325141739|gb|EGC64192.1| radical SAM domain protein [Neisseria meningitidis 961-5945]
 gi|325197741|gb|ADY93197.1| radical SAM domain protein [Neisseria meningitidis G2136]
          Length = 212

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 97/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGIPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 55  -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K     I+   E+++V     ++             + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSP 170

Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
              DG     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGIE 212


>gi|161869455|ref|YP_001598622.1| hypothetical protein NMCC_0466 [Neisseria meningitidis 053442]
 gi|161595008|gb|ABX72668.1| conserved hypothetical protein [Neisseria meningitidis 053442]
          Length = 212

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 55  -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K +        E+++V     ++             + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYENSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSP 170

Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
              DG     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212


>gi|268594121|ref|ZP_06128288.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268547510|gb|EEZ42928.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
          Length = 240

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 41  YRIVEIFESLQGEGRNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 82

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 83  -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLK 138

Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K +        E+++V     ++             + L P
Sbjct: 139 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRIVADGDVLAFCENMERKIRARHYYLSP 198

Query: 176 MD--GPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
            +  G     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 199 CEQNGVMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 240


>gi|303250156|ref|ZP_07336358.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252734|ref|ZP_07534625.1| hypothetical protein appser6_12480 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302651219|gb|EFL81373.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859766|gb|EFM91788.1| hypothetical protein appser6_12480 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 210

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + I EIF +LQGEG + G   +F R   CNL            C +CDT++      +  
Sbjct: 11  FPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY-----NEYE 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           +++V ++ + ++          +  ++TGGEP +  ++  L+      G+ +A+ETNG  
Sbjct: 55  KWSVAKILERVKS------YSAKNIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNGLK 108

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS---PENYIGFDFERFSLQ 174
             P+ ID+I  SPK     K     I    E+++V  + +V     +       E + L 
Sbjct: 109 AVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVMDKGDVQSFCEQIETQITAEHYYLS 168

Query: 175 PM--DGP--FLEENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211
           P   DG    LE  T L I +     PKW+LS+QTHK +GI 
Sbjct: 169 PCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGIE 210


>gi|307261578|ref|ZP_07543246.1| hypothetical protein appser12_11390 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868701|gb|EFN00510.1| hypothetical protein appser12_11390 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 210

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + I EIF +LQGEG + G   +F R   CNL            C +CDT++      +  
Sbjct: 11  FPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY-----NEYE 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           ++++ ++ + ++          +  ++TGGEP +  ++  L+      G+ +A+ETNG  
Sbjct: 55  KWSLAKILERVKS------YSAKNIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNGLK 108

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS---PENYIGFDFERFSLQ 174
             P+ ID+I  SPK     K     I    E+++V  + +V     +       E + L 
Sbjct: 109 AVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVVDKGDVQSFCEQIETQITAEHYYLS 168

Query: 175 PM--DGP--FLEENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211
           P   DG    LE  T L I +     PKW+LS+QTHK +GI 
Sbjct: 169 PCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGIE 210


>gi|307257150|ref|ZP_07538922.1| hypothetical protein appser10_11500 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864312|gb|EFM96223.1| hypothetical protein appser10_11500 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 210

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + I EIF +LQGEG + G   +F R   CNL            C +CDT++      +  
Sbjct: 11  FPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY-----NEYE 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           +++V ++ + ++          +  ++TGGEP +  ++  L+      G+ +A+ETNG  
Sbjct: 55  KWSVAKILERVKS------YSAKNIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNGLK 108

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS---PENYIGFDFERFSLQ 174
             P+ ID+I  SPK     K     I    E+++V  + +V     +       E + L 
Sbjct: 109 AVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVMDKGDVQSFCEQIETQITAEHYYLS 168

Query: 175 PM--DGP--FLEENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211
           P   DG    LE  T L I +     PKW+LS+QTHK +GI 
Sbjct: 169 PCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGIE 210


>gi|126697219|ref|YP_001092105.1| putative organic radical activating protein [Prochlorococcus
           marinus str. MIT 9301]
 gi|126544262|gb|ABO18504.1| possible organic radical activating enzyme [Prochlorococcus marinus
           str. MIT 9301]
          Length = 223

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 98/238 (41%), Gaps = 51/238 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F +LQGEG HAG+ A F R +GC              C +CDT     +     
Sbjct: 5   LPLVEQFHSLQGEGYHAGKSAFFVRLAGC-----------KVGCSWCDTKNSWDE----K 49

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGFEIAV 116
           +Y    +  +I+   I  EK   +CV+TGGEPL        +A+ K       +  +I +
Sbjct: 50  KYPSISIEKIIDRIKIAREKGASFCVITGGEPLQHNLDNFCKAIKKMTMGEELKPMKIHI 109

Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQE---------------------LKLV 152
           ET+G        DWI +SPK     K   +K   E                     LK  
Sbjct: 110 ETSGVNSISGSYDWITLSPKRHSPPKSYFLKNCNEIKIIINEIEDIEFAIQIKKETLKQY 169

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            P      E+ +  + + F LQP          +LAI +   NP W+LS+QTHK++ I
Sbjct: 170 HPS---KSEDGLKKEDKIFYLQPA--WNNANGFSLAIDFVKNNPDWKLSLQTHKYLKI 222


>gi|304388249|ref|ZP_07370369.1| radical SAM domain protein [Neisseria meningitidis ATCC 13091]
 gi|304337776|gb|EFM03925.1| radical SAM domain protein [Neisseria meningitidis ATCC 13091]
          Length = 212

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 95/222 (42%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 55  -FGMMSLSDIL---GCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K +        E+++V     V              + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIAEADEVRIVADGDVVGFCENMERKIRAHHYYLSP 170

Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
              DG     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGIE 212


>gi|261492302|ref|ZP_05988864.1| NrdG protein [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495367|ref|ZP_05991816.1| NrdG protein [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308970|gb|EEY10224.1| NrdG protein [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311985|gb|EEY13126.1| NrdG protein [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 208

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 35/221 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + I EIF +LQGEG + G  A+F RF  CNL            C +CDT++   +     
Sbjct: 10  FPIVEIFESLQGEGFNTGMPAIFVRFGKCNLT-----------CPWCDTNYNQFE----- 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           ++ +  +   +           +  ++TGGEP +Q ++  L++   K G+ +A+ETNG  
Sbjct: 54  QWTLSDILAKVRS------YSAKNVIITGGEPTIQPNLSLLLEQFKKEGYFLAIETNGLK 107

Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQ--VNVSPENYIGFDFERFSLQP 175
           E P  ID+I  SPK     K +        E+++V          +       E + L P
Sbjct: 108 EVPAQIDYIATSPKRMYQEKYQRRCIEFANEVRIVVDGEVQGFCEQIESQIKAEHYYLSP 167

Query: 176 MDGP----FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211
            +       LE  T +  ++     PKW+LS+QTHK +GI 
Sbjct: 168 CEVEGKMNLLETITQIGLLNQRPNKPKWQLSIQTHKIVGIE 208


>gi|15676436|ref|NP_273574.1| hypothetical protein NMB0529 [Neisseria meningitidis MC58]
 gi|7225754|gb|AAF40959.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|316985383|gb|EFV64331.1| radical SAM superfamily protein [Neisseria meningitidis H44/76]
 gi|325139736|gb|EGC62270.1| radical SAM domain protein [Neisseria meningitidis CU385]
 gi|325200783|gb|ADY96238.1| radical SAM domain protein [Neisseria meningitidis H44/76]
          Length = 212

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 55  -FGMMGLSDIL---GRLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K +        E+++V     ++             + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYENSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSP 170

Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
              DG     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGIE 212


>gi|87300560|ref|ZP_01083402.1| possible organic radical activating enzyme [Synechococcus sp. WH
           5701]
 gi|87284431|gb|EAQ76383.1| possible organic radical activating enzyme [Synechococcus sp. WH
           5701]
          Length = 218

 Score =  194 bits (495), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 37/228 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F +LQGEG HAGR A F R +GC           S  C +CDT           
Sbjct: 8   LPVVETFHSLQGEGVHAGRSAFFIRLAGC-----------SVGCSWCDTKHSW----PAD 52

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK---RG---FEIAVE 117
            + + +  DL     +   +   + V+TGGEPL     PL +AL +    G     + +E
Sbjct: 53  AHPLCRFQDLAASAALAAAEGAAFVVITGGEPLHHNLDPLCEALRQGSGAGPSPLPLHLE 112

Query: 118 TNGTIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQ-----------VNVSPENY 163
           T+G        +WI +SPK         +    ELK+V  +             V     
Sbjct: 113 TSGVDPLSGRFEWITLSPKRHRPPTAELLAACHELKVVIHEIADLAFAETMAAAVRSACP 172

Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +     +  LQP  G        LA+ +  +NP WRLS+Q+HK++G+R
Sbjct: 173 VKGALPQLLLQP--GWGSAAGQELAVQHVRRNPAWRLSLQSHKWLGVR 218


>gi|254669979|emb|CBA04660.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
          Length = 212

 Score =  194 bits (494), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 36/222 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF +LQGEG + G  AVF R   CNL            C +CDTD++        
Sbjct: 13  YRIVEIFESLQGEGWNTGMPAVFVRLGKCNL-----------ACGWCDTDYLT------- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +  L+D++           R  ++TGGEP +Q  +  L+  L   G+ + +ETNG  
Sbjct: 55  -FGMMGLSDIL---GRLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110

Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQP 175
             P  ID++  SPKA    K +        E+++V     ++             + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYENSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSP 170

Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGIR 211
              DG     +T   I      P     W+LSVQTHK+ GI 
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE 212


>gi|322514966|ref|ZP_08067979.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Actinobacillus ureae ATCC 25976]
 gi|322119074|gb|EFX91234.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Actinobacillus ureae ATCC 25976]
          Length = 210

 Score =  194 bits (493), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 103/221 (46%), Gaps = 36/221 (16%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            I EIF +LQGEG + G   +F R   CNL            C +CDT++      +  +
Sbjct: 12  PIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY-----NEYEK 55

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
           +NV ++ + ++          +  ++TGGEP +  ++  L+      G+ +A+ETNG   
Sbjct: 56  WNVAKILERVKS------YSAKNIIITGGEPTMYANLSVLLDVFKVEGYWLAIETNGLKA 109

Query: 124 PPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS---PENYIGFDFERFSLQP 175
            P+ ID+I  SPK     K     I    E+++V  + +V     +       E + L P
Sbjct: 110 VPKQIDYIATSPKLMYQEKYLRECIPFANEVRIVMDKGDVQGFCEQIETQITAEHYYLSP 169

Query: 176 M--DGP--FLEENTNLAI-SYCFQNPKWRLSVQTHKFIGIR 211
              DG    LE  T L I +     PKW+LS+QTHK +GI 
Sbjct: 170 CEVDGKMNLLETITQLGILNQRANKPKWQLSLQTHKLVGIE 210


>gi|220926065|ref|YP_002501367.1| radical SAM domain-containing protein [Methylobacterium nodulans
           ORS 2060]
 gi|219950672|gb|ACL61064.1| Radical SAM domain protein [Methylobacterium nodulans ORS 2060]
          Length = 230

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/253 (27%), Positives = 97/253 (38%), Gaps = 65/253 (25%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI--- 57
           M ++++ EIF T QGE    G  +VF R  GC +            C FCDT        
Sbjct: 1   MTVFAVNEIFETFQGEAAFTGTPSVFVRLQGCPV-----------GCAFCDTKMTWHVRP 49

Query: 58  --------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
                               R + + LA L+      GE   R+ V TGGEP L     +
Sbjct: 50  EHEIEVGAMIAKTEDAPTWARLHDEDLAMLV------GEFRARHVVFTGGEPALYDLTEV 103

Query: 104 IQALNKRGFEIAVETNGTIEPPQGID---WICVSPKAGCDLKIK-------GGQELKLVF 153
            + L  +G  + +ET+GT      ID   W+ VSPK      +K          E+K+  
Sbjct: 104 SRRLIDQGRTVQLETSGT--ALIRIDPHAWVTVSPKIDMPGGLKVLPAAVARANEIKMPI 161

Query: 154 PQVNVSPENYIGFDFER---------------FSLQPMDGPFLEENTNLAISYCFQNPKW 198
            +     E    F  E                  LQP+     E+ T L +     N  W
Sbjct: 162 GKP-ADIEKLQAFLAEHPAVGVAYTGSGPALLIWLQPLSQS--EKATALCMEAAAAN-GW 217

Query: 199 RLSVQTHKFIGIR 211
           RLS+QTHKF+G+R
Sbjct: 218 RLSLQTHKFVGVR 230


>gi|33241303|ref|NP_876245.1| putative organic radical activating protein [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|33238833|gb|AAQ00898.1| Radical activating enzyme [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 225

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 95/241 (39%), Gaps = 48/241 (19%)

Query: 1   MKL-YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M     I E F +LQGEG H G+ A F R  GC              C +CDT     + 
Sbjct: 1   MSTCLPIVERFHSLQGEGLHFGKSAFFIRLGGC-----------KVGCPWCDTK----ES 45

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGF 112
                +    + +L +E  I   +     V+TGGEPL      L + +            
Sbjct: 46  WSIATHQEATVEELSKEAAIAQSQGAAILVITGGEPLHHNLNALCKTIQDFTSHNSRETM 105

Query: 113 EIAVETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQ-------------- 155
            I +ET+G  E    I+WI +SPK     K   ++   E+K+V  Q              
Sbjct: 106 PIHLETSGVDEITGLINWITLSPKRHALPKKSLLRACDEIKVVIHQKEDLLFAEEMANQS 165

Query: 156 ------VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
                    + +           LQP  G   +E T L I Y   +P+WRLS+QTHK++G
Sbjct: 166 IKERQISKKTSDENHKISQPHLFLQP--GWNSKEGTQLTIEYIKSHPQWRLSLQTHKWLG 223

Query: 210 I 210
           +
Sbjct: 224 V 224


>gi|33862246|ref|NP_893807.1| putative organic radical activating protein [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33634464|emb|CAE20149.1| possible organic radical activating enzyme [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 223

 Score =  192 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 104/237 (43%), Gaps = 47/237 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F +LQGEG H G+ A F R +GC           S  C +CDT     +     
Sbjct: 5   LPLVEKFHSLQGEGFHTGQSAFFIRLAGC-----------SVGCSWCDTKHSWDK----E 49

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-------GFEIAV 116
           +Y +  +  +I+E     +K   + V+TGGEPL      L QA+NK          +I +
Sbjct: 50  KYPLIPIKKIIDEIKKARKKGASFLVITGGEPLHHNLDNLCQAINKETSEKDQNPIKIHI 109

Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQELKLVFP------------------- 154
           ET+G  +     DWI +SPK     K   ++   ELK++                     
Sbjct: 110 ETSGVNKMSGNYDWITLSPKRHLPPKTYFLENFNELKIIINDKKDIDFAIDIKQEIMNKY 169

Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           Q   S +N+   D +++ +QP          +L I +   NP+W LS+QTHK++ I+
Sbjct: 170 QNLSSKDNFYKLD-KKYYVQPA--WENARGFSLTIDFVKNNPEWNLSLQTHKYLKIK 223


>gi|145627830|ref|ZP_01783631.1| predicted methyltransferase [Haemophilus influenzae 22.1-21]
 gi|144979605|gb|EDJ89264.1| predicted methyltransferase [Haemophilus influenzae 22.1-21]
          Length = 217

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 104/221 (47%), Gaps = 35/221 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           ++I EIF +LQGEG + G  +VF RF  CNL            C +CDT +   +     
Sbjct: 19  FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           R++V Q+ + +           +  ++TGGEP +   +  L++     G+ +A+ETNG  
Sbjct: 63  RWSVSQILEKVRS------FSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 116

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175
             P  ID+I  SPK+    K     I    E+++V      S    I      + + L P
Sbjct: 117 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 176

Query: 176 --MDGP--FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211
             +DG    LE  T L  ++     PKW+LS+QTHK IGI 
Sbjct: 177 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGIE 217


>gi|317968277|ref|ZP_07969667.1| organic radical activating protein [Synechococcus sp. CB0205]
          Length = 209

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 63/215 (29%), Positives = 90/215 (41%), Gaps = 24/215 (11%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F +LQGEG HAGR A F R  GC              C +CDT           
Sbjct: 12  LPVVETFHSLQGEGLHAGRSAFFIRLGGC-----------RVGCSWCDTKHSW----PAE 56

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTI 122
            +    L +L             + VLTGGEPL      L  A+ +     I +ET+G  
Sbjct: 57  VHPQQSLEELALACAEAASAGAAFVVLTGGEPLHHNLDALSAAIRQHCSLPIHLETSGVD 116

Query: 123 EPPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVN---VSPENYIGFDFERFSLQPM 176
                 DWI +SPK     +   ++   ELK+V  +      +  +        + LQP 
Sbjct: 117 PLTGSPDWISLSPKRHQPPRAELLQRCDELKVVVHEAADLLFAEVSASQAPQATWLLQP- 175

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            G    E   LA+ +    P+WRLS+Q+HK++G+R
Sbjct: 176 -GWDCREGQALALEFVQSQPRWRLSLQSHKWLGVR 209


>gi|301169927|emb|CBW29531.1| predicted organic radical activating enzyme [Haemophilus influenzae
           10810]
          Length = 209

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 104/221 (47%), Gaps = 35/221 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           ++I EIF +LQGEG + G  +VF RF  CNL            C +CDT +   +     
Sbjct: 11  FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           R++V Q+ + +           +  ++TGGEP +   +  L++     G+ +A+ETNG  
Sbjct: 55  RWSVSQILEKVRS------FSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 108

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175
             P  ID+I  SPK+    K     I    E+++V      S    I      + + L P
Sbjct: 109 AIPAQIDYISTSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 168

Query: 176 --MDGP--FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211
             +DG    LE  T L  ++     PKW+LS+QTHK IGI 
Sbjct: 169 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGIE 209


>gi|294787822|ref|ZP_06753066.1| radical SAM domain protein [Simonsiella muelleri ATCC 29453]
 gi|294484115|gb|EFG31798.1| radical SAM domain protein [Simonsiella muelleri ATCC 29453]
          Length = 205

 Score =  191 bits (487), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 100/223 (44%), Gaps = 40/223 (17%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + I EIF TLQGEG + G  +VF RF  CNL            C +CDT++         
Sbjct: 6   FRIVEIFETLQGEGYNTGMPSVFIRFGKCNL-----------ACHWCDTNY--------Q 46

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           ++ +  L  ++++ +   +   +  ++TGGEP +Q  +  L+  L   G+ IA+ETNG  
Sbjct: 47  QFEMMTLTQIMDQVY---DYSAKNIIITGGEPTIQPQLEILLNRLKSEGYFIAIETNGLR 103

Query: 123 EPPQGIDWICVSPKAGC-----DLKIKGGQELKLVFPQVNVSPENYI---GFDFERFSLQ 174
             P+ ID+I  SPK           +    E+++V    ++     I       +R+ L 
Sbjct: 104 AVPEQIDYIATSPKRLYANAYDKTCLSAADEVRIVVDSDDIFSFCEIIEQKIRAKRYYLS 163

Query: 175 PMDGPFLEENTNLAISYCF-------QNPKWRLSVQTHKFIGI 210
           P +     E   LA              P W+LS+QTHK  GI
Sbjct: 164 PCEQ--NGEMNILATITLLGKLNARPNQPHWQLSIQTHKLCGI 204


>gi|319776568|ref|YP_004139056.1| methyltransferase [Haemophilus influenzae F3047]
 gi|317451159|emb|CBY87392.1| Predicted methyltransferase [Haemophilus influenzae F3047]
          Length = 209

 Score =  191 bits (487), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 105/221 (47%), Gaps = 35/221 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           ++I EIF +LQGEG + G  +VF RF  CNL            C +CDT +   +     
Sbjct: 11  FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           R++V Q+ + +           +  ++TGGEP +  ++  L++     G+ +A+ETNG  
Sbjct: 55  RWSVSQILEKVRS------FSSKNIIITGGEPTIVPEIEYLLEQFKSDGYFLAIETNGLK 108

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175
             P  ID+I  SPK+    K     I    E+++V      S    I      + + L P
Sbjct: 109 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 168

Query: 176 --MDGP--FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211
             +DG    LE  T L  ++     PKW+LS+QTHK IGI 
Sbjct: 169 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGIE 209


>gi|145639292|ref|ZP_01794898.1| predicted methyltransferase [Haemophilus influenzae PittII]
 gi|145271595|gb|EDK11506.1| predicted methyltransferase [Haemophilus influenzae PittII]
 gi|309751168|gb|ADO81152.1| Probable 7-cyano-7-deazaguanine (preQ0) synthesis protein QueE
           [Haemophilus influenzae R2866]
          Length = 211

 Score =  191 bits (487), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 104/221 (47%), Gaps = 35/221 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           ++I EIF +LQGEG + G  +VF RF  CNL            C +CDT +   +     
Sbjct: 13  FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 56

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           R++V Q+ + +           +  ++TGGEP +   +  L++     G+ +A+ETNG  
Sbjct: 57  RWSVSQILEKVRS------FSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175
             P  ID+I  SPK+    K     I    E+++V      S    I      + + L P
Sbjct: 111 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 170

Query: 176 --MDGP--FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211
             +DG    LE  T L  ++     PKW+LS+QTHK IGI 
Sbjct: 171 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGIE 211


>gi|15602049|ref|NP_245121.1| hypothetical protein PM0184 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720404|gb|AAK02268.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 209

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 103/221 (46%), Gaps = 35/221 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y+I EIF +LQGEG + G  ++F RF  CNL            C +CDT +         
Sbjct: 11  YAIVEIFESLQGEGFNTGMPSIFVRFGKCNL-----------ACPWCDTPY--------N 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           +Y    L+ ++++         +  ++TGGEP +   +  L+ AL   G+ +A+ETNG  
Sbjct: 52  QYTTWTLSKIVQK---VRSFSAKNIIITGGEPTIVPKIGVLLDALKAEGYFLAIETNGLK 108

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175
             P  ID+I  SPK     K     I    E+++V  +  ++    I      + + L P
Sbjct: 109 SIPNQIDYIATSPKRLYQHKYQQKCIPFAHEVRIVADENVIAFCEQIEQQIRADHYYLSP 168

Query: 176 MDG----PFLEENTNLA-ISYCFQNPKWRLSVQTHKFIGIR 211
            +       LE  T +  ++     PKW+LS+QTHK IGI 
Sbjct: 169 CEVNGEMNLLETITQIGRLNQRVNKPKWQLSIQTHKLIGIE 209


>gi|188995161|ref|YP_001929413.1| hypothetical protein PGN_1297 [Porphyromonas gingivalis ATCC 33277]
 gi|188594841|dbj|BAG33816.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
           33277]
          Length = 197

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 67/216 (31%), Positives = 96/216 (44%), Gaps = 33/216 (15%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGEG + GR AVF R +GCNL            C +CDTDF       G + 
Sbjct: 3   INEIFHSLQGEGANTGRAAVFVRLAGCNL-----------ACPYCDTDFAQ-----GKKM 46

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
           +++++A  IE          R+ + TGGEP LQ+        ++ G+  A+ETNGT   P
Sbjct: 47  SLEEIARSIE------HYPTRFLIWTGGEPTLQLTEEATAYFHRLGYYQAIETNGTRLVP 100

Query: 126 QGIDWICVSPKAGCDLKIK-----GGQELKLVF-PQVNVSPENYIGFDFERFSLQPMDGP 179
           +GID+I  SPK     K+K     G  E +        + P        + + + P+   
Sbjct: 101 KGIDYISCSPKPEAIGKLKENFPDGVGEFRFPLGSDTPLPPPIDELPTAQHYLVSPIFAG 160

Query: 180 F-----LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                         + +    P W LS+Q HK I I
Sbjct: 161 DDAMEPDPSAITRCVEFVKAFPAWCLSIQMHKLIHI 196


>gi|16273111|ref|NP_439345.1| hypothetical protein HI1189 [Haemophilus influenzae Rd KW20]
 gi|68249735|ref|YP_248847.1| organic radical activating protein [Haemophilus influenzae
           86-028NP]
 gi|148826202|ref|YP_001290955.1| organic radical activating protein [Haemophilus influenzae PittEE]
 gi|229844856|ref|ZP_04464994.1| predicted organic radical activating enzyme [Haemophilus influenzae
           6P18H1]
 gi|229846220|ref|ZP_04466332.1| predicted organic radical activating enzyme [Haemophilus influenzae
           7P49H1]
 gi|260581110|ref|ZP_05848931.1| organic radical activating protein [Haemophilus influenzae RdAW]
 gi|260582119|ref|ZP_05849913.1| organic radical activating protein [Haemophilus influenzae NT127]
 gi|329124080|ref|ZP_08252627.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Haemophilus aegyptius ATCC 11116]
 gi|1723816|sp|P45097|Y1189_HAEIN RecName: Full=7-carboxy-7-deazaguanine synthase homolog
 gi|1574116|gb|AAC22842.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|68057934|gb|AAX88187.1| predicted organic radical activating enzyme [Haemophilus influenzae
           86-028NP]
 gi|148716362|gb|ABQ98572.1| predicted organic radical activating enzyme [Haemophilus influenzae
           PittEE]
 gi|229811224|gb|EEP46941.1| predicted organic radical activating enzyme [Haemophilus influenzae
           7P49H1]
 gi|229812237|gb|EEP47928.1| predicted organic radical activating enzyme [Haemophilus influenzae
           6P18H1]
 gi|260092239|gb|EEW76181.1| organic radical activating protein [Haemophilus influenzae RdAW]
 gi|260094751|gb|EEW78645.1| organic radical activating protein [Haemophilus influenzae NT127]
 gi|309973347|gb|ADO96548.1| Probable 7-cyano-7-deazaguanine (preQ0) synthesis protein QueE
           [Haemophilus influenzae R2846]
 gi|327467505|gb|EGF13003.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Haemophilus aegyptius ATCC 11116]
          Length = 211

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 104/221 (47%), Gaps = 35/221 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           ++I EIF +LQGEG + G  +VF RF  CNL            C +CDT +   +     
Sbjct: 13  FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 56

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           R++V Q+ + +           +  ++TGGEP +   +  L++     G+ +A+ETNG  
Sbjct: 57  RWSVSQILEKVRS------FSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175
             P  ID+I  SPK+    K     I    E+++V      S    I      + + L P
Sbjct: 111 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 170

Query: 176 --MDGP--FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211
             +DG    LE  T L  ++     PKW+LS+QTHK IGI 
Sbjct: 171 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGIE 211


>gi|145633081|ref|ZP_01788813.1| predicted methyltransferase [Haemophilus influenzae 3655]
 gi|145637058|ref|ZP_01792721.1| predicted methyltransferase [Haemophilus influenzae PittHH]
 gi|319897344|ref|YP_004135540.1| methyltransferase [Haemophilus influenzae F3031]
 gi|144986307|gb|EDJ92886.1| predicted methyltransferase [Haemophilus influenzae 3655]
 gi|145269712|gb|EDK09652.1| predicted methyltransferase [Haemophilus influenzae PittHH]
 gi|317432849|emb|CBY81214.1| Predicted methyltransferase [Haemophilus influenzae F3031]
          Length = 209

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 104/221 (47%), Gaps = 35/221 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           ++I EIF +LQGEG + G  +VF RF  CNL            C +CDT +   +     
Sbjct: 11  FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           R++V Q+ + +           +  ++TGGEP +   +  L++     G+ +A+ETNG  
Sbjct: 55  RWSVSQILEKVRS------FSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 108

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175
             P  ID+I  SPK+    K     I    E+++V      S    I      + + L P
Sbjct: 109 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 168

Query: 176 --MDGP--FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211
             +DG    LE  T L  ++     PKW+LS+QTHK IGI 
Sbjct: 169 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGIE 209


>gi|72536298|gb|AAZ73210.1| hypothetical protein [Escherichia coli]
          Length = 202

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 56/219 (25%), Positives = 81/219 (36%), Gaps = 49/219 (22%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-----------------QGTKGGRY 65
            A+F R  GC +            C +CDT                      +  K G  
Sbjct: 1   PAIFIRLQGCPV-----------GCDWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAA 49

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
           + + L  +I  Q        R+ V+TGGEP +   +PL   L K GF   +ET+GT E  
Sbjct: 50  SSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVR 105

Query: 126 QGI-DWICVSPKAGC-------DLKIKGGQELKL------VFPQVNVSPENYIGFDFERF 171
                W+ VSPK             ++   E+K           ++              
Sbjct: 106 CTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVI 165

Query: 172 SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 166 ALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 201


>gi|145631238|ref|ZP_01787011.1| predicted organic radical activating enzyme [Haemophilus influenzae
           R3021]
 gi|144983165|gb|EDJ90660.1| predicted organic radical activating enzyme [Haemophilus influenzae
           R3021]
          Length = 211

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 104/221 (47%), Gaps = 35/221 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           ++I EIF +LQGEG + G  +VF RF  CNL            C +CDT +   +     
Sbjct: 13  FNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPYNNFK----- 56

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           R++V Q+ + +           +  ++TGGEP +   +  L++     G+ +A+ETNG  
Sbjct: 57  RWSVSQILEKVRS------FSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 110

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175
             P  ID+I  SPK+    K     I    E+++V      S    I      + + L P
Sbjct: 111 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 170

Query: 176 --MDGP--FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211
             +DG    LE  T L  ++     PKW+LS+QTHK IGI 
Sbjct: 171 CEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGIE 211


>gi|330431519|gb|AEC16578.1| molybdenum cofactor biosynthesis protein A [Gallibacterium anatis
           UMN179]
          Length = 203

 Score =  191 bits (485), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 100/225 (44%), Gaps = 43/225 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y+I EIF +LQGEG + G  AVF RF  CNL            C +CDTD+         
Sbjct: 5   YAIVEIFESLQGEGFNTGMPAVFIRFGKCNL-----------ACPWCDTDYQTF-----S 48

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
              + Q+AD +           +  ++TGGEP +Q ++  L+      G+ +++ETNG  
Sbjct: 49  LMTLQQIADQVTA------FSAKNIIITGGEPTIQPNLEKLLSYFKTLGYFLSIETNGLK 102

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVS---PENYIGFDFERFSLQ 174
             P  ID+I  SPK     K     I    E+++V    N+     E     + + + L 
Sbjct: 103 PVPPQIDYIATSPKRLYRHKYQQRCITHADEVRIVNDDENILSFCREIAKKIEAKHYFLS 162

Query: 175 PMDGPFLEENTNLAISYCFQ--------NPKWRLSVQTHKFIGIR 211
           P +    E N    +    +        + KW+LS+QTHK +GI 
Sbjct: 163 PCEQ-QGEMNL---LDTIRKLGQLNENTDIKWQLSIQTHKLVGIE 203


>gi|260914430|ref|ZP_05920899.1| radical SAM domain protein [Pasteurella dagmatis ATCC 43325]
 gi|260631531|gb|EEX49713.1| radical SAM domain protein [Pasteurella dagmatis ATCC 43325]
          Length = 209

 Score =  189 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 103/221 (46%), Gaps = 35/221 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y+I EIF +LQGEG + G  ++F RF  CNL            C +CDT++         
Sbjct: 11  YNIVEIFESLQGEGFNTGMPSIFVRFGKCNL-----------ACPWCDTNY--------N 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           +Y    L+ ++++         +  ++TGGEP +   +  L+  L   G+ +A+ETNG  
Sbjct: 52  QYTTWSLSQILQK---VRSFSAKNIIITGGEPTIVPKIEYLLDTLKAEGYFLAIETNGLK 108

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175
             P  ID+I  SPK     K     I    E+++V  +   S    I      +R+ L P
Sbjct: 109 TIPSQIDYIATSPKRLYQHKYQQKCIPFANEVRIVADEDVFSFCEQIEQQIHADRYYLSP 168

Query: 176 MDG----PFLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211
            +       LE  T +  ++     PKW+LS+QTHK IGI 
Sbjct: 169 CEIDGEMNLLETITQIGLLNQRVNKPKWQLSIQTHKLIGIE 209


>gi|148243542|ref|YP_001228699.1| organic radical activating protein [Synechococcus sp. RCC307]
 gi|147851852|emb|CAK29346.1| Organic radical activating enzyme [Synechococcus sp. RCC307]
          Length = 202

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/219 (28%), Positives = 91/219 (41%), Gaps = 25/219 (11%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    + E F +LQGEG HAGR A F R  GC           +  C +CDT     Q  
Sbjct: 1   MSSLPVVETFHSLQGEGLHAGRSAFFIRLGGC-----------TVGCSWCDTKHSWPQTA 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI--AVET 118
               +   +   L  E     ++   + V+TGGEPL        QAL +    +   +ET
Sbjct: 50  ----HPALETQALAAEAAEAQQQGAAFVVITGGEPLHHNLDGFCQALAEMAPTLPRHLET 105

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKG---GQELKLVFP---QVNVSPENYIGFDFERFS 172
           +G         WI +SPKA      +      ELK V      +  +           + 
Sbjct: 106 SGVDPLSGSFSWITLSPKAHKPPTQELLACCDELKAVVHGPEDLAFAEAMAAQAPQAHWL 165

Query: 173 LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           LQP  G    +   LA+ +   +P WRLS+Q+HK++G+R
Sbjct: 166 LQP--GWDSPQGQQLAVEFVRNHPLWRLSLQSHKWLGVR 202


>gi|33151750|ref|NP_873103.1| hypothetical protein HD0556 [Haemophilus ducreyi 35000HP]
 gi|33147971|gb|AAP95492.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 209

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/218 (28%), Positives = 96/218 (44%), Gaps = 35/218 (16%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
            EIF +LQGEG + G   +F R   CNL            C +CDT++   Q     ++ 
Sbjct: 14  VEIFESLQGEGFNTGLPCIFIRLGKCNL-----------ACPWCDTNYNEYQ-----KWT 57

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPP 125
           ++ +   ++          +  ++TGGEP L  ++  L++ L   G+ +A+ETNG    P
Sbjct: 58  LEMILAKVKS------YTAKNIIITGGEPTLYANLTILLEQLKNAGYWLAIETNGLKAVP 111

Query: 126 QGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPENYI--GFDFERFSLQPMDG 178
             ID+I  SPK     K +        E+++V           I        + L P + 
Sbjct: 112 SQIDYIATSPKKMYQEKYQREYLTQADEVRIVVDDDVTEFCALIEQKIQAHHYYLSPCEI 171

Query: 179 P----FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211
                 LE  T L  ++     PKW+LS+QTHK IGI 
Sbjct: 172 EGKMNLLETITQLGQLNQRVNKPKWQLSIQTHKIIGIE 209


>gi|251792175|ref|YP_003006895.1| NrdG protein [Aggregatibacter aphrophilus NJ8700]
 gi|247533562|gb|ACS96808.1| NrdG protein [Aggregatibacter aphrophilus NJ8700]
          Length = 209

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 101/220 (45%), Gaps = 35/220 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y+I EIF +LQGEG + G  ++F RF  CNL            C +CDT++         
Sbjct: 11  YNIVEIFESLQGEGFNTGMPSIFVRFGKCNL-----------ACPWCDTNY--------N 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           ++    LA ++EE         +  ++TGGEP +  ++  L+  +   G+ +A+ETNG  
Sbjct: 52  QFERMTLAQIMEE---VRSFSAKNIIITGGEPTIVPNIELLLNQMKSEGYFLAIETNGLK 108

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQV--NVSPENYIGFDFERFSLQP 175
             P  ID+I  SPK     K     I+   E+++V      +            R+ L P
Sbjct: 109 PIPTQIDYIATSPKRLYQHKYEQRCIEFADEVRIVADGDVSDFCALIEENIQATRYYLSP 168

Query: 176 MDG----PFLEENTNL-AISYCFQNPKWRLSVQTHKFIGI 210
            +       LE  T L  ++     PKW LSVQTHK IGI
Sbjct: 169 CEINGKMNLLETITQLGLLNQRPNKPKWLLSVQTHKLIGI 208


>gi|157414296|ref|YP_001485162.1| putative organic radical activating protein [Prochlorococcus
           marinus str. MIT 9215]
 gi|157388871|gb|ABV51576.1| possible organic radical activating enzyme [Prochlorococcus marinus
           str. MIT 9215]
          Length = 223

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 102/240 (42%), Gaps = 46/240 (19%)

Query: 1   MKLY-SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M  Y  I E F +LQGEG HAG+ A F R +GC              C +CDT     + 
Sbjct: 1   MTNYLPIVEQFHSLQGEGYHAGKSAFFVRLAGC-----------KVGCSWCDTKNSWDE- 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGF 112
               +Y    +  +I+   I  +K   +CV+TGGEPL        +A+ K          
Sbjct: 49  ---KKYPSISIKKIIDRIKIARDKGASFCVITGGEPLQHNLDNFCKAIKKMTMREEQNSM 105

Query: 113 EIAVETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQEL-----------------KLV 152
           +I +ET+G        DW+ +SPK     K   +K   E+                 K  
Sbjct: 106 KIHIETSGVNSISGSYDWMTLSPKRHSPPKNYFLKKCNEIKIIINDIKDIEFAIQIKKET 165

Query: 153 FPQVNVSP-ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             Q  +S  E+ +  + + F LQP          +LAI +   NP W+LS+QTHK++ I+
Sbjct: 166 LKQYQLSKSEDGLKKEDKIFYLQPA--WNNANGLSLAIDFVKNNPDWKLSLQTHKYLKIK 223


>gi|325291195|ref|YP_004267376.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324966596|gb|ADY57375.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 203

 Score =  187 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 92/221 (41%), Gaps = 36/221 (16%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           K Y + EIF ++QGEG   G  A F R   CNL           +C +CD+        K
Sbjct: 8   KEYPVHEIFDSIQGEGYWTGAAASFVRLQQCNL-----------RCAWCDSKGTWEG--K 54

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
             +   D++   +              +LTGGEPLL     L+++L   G ++ +ETNGT
Sbjct: 55  PEKMTADEILAAV---------HSERVILTGGEPLLHDLTALLESLKAAGKKVHIETNGT 105

Query: 122 IEPPQGI---DWICVSPKAGCDLKIK-----GGQELKLVFPQVNVSPENYIGFDF---ER 170
               +      WI VSPK      ++        E K V  + + S +     +F     
Sbjct: 106 QPWKESYPQEAWITVSPKKESGYLVQPSIKSKANEYKFVVDE-DFSADILAQLEFNSCPN 164

Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             L P +     E    A+S   Q P  RL++Q HK IG+R
Sbjct: 165 IFLSPEN--VRSEMIKKALSIVAQYPFCRLTLQLHKLIGVR 203


>gi|319779040|ref|YP_004129953.1| Queuosine Biosynthesis QueE Radical SAM [Taylorella equigenitalis
           MCE9]
 gi|317109064|gb|ADU91810.1| Queuosine Biosynthesis QueE Radical SAM [Taylorella equigenitalis
           MCE9]
          Length = 222

 Score =  187 bits (476), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 107/228 (46%), Gaps = 43/228 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + I EIF +LQGEG + G  A F R   CNL            C +CDT++        G
Sbjct: 18  FRIVEIFKSLQGEGFNTGMPATFVRLGRCNL-----------ACGWCDTNYNSF-----G 61

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             ++ ++  ++E+   +        +LTGGEP +  +V  LI+A   RG+ + +ETNG  
Sbjct: 62  LKSLSEILQIVEDLGQS------NIILTGGEPSVHPNVELLIEAFKSRGYYLCIETNGIS 115

Query: 123 EPPQGIDWICVSPKAGCDLK-----IKGGQELKLVFPQVNVSPENYI--------GFDFE 169
           + P+GID+I +SPK     +     ++   E+++V      + E+++         F+ +
Sbjct: 116 DVPEGIDYIAISPKYCYKERYEKVGLRYADEIRIVVDFNETNREDFLNWLQDINEKFNSK 175

Query: 170 RFSLQPMDGPFLEENTNLAISYC------FQNPKWRLSVQTHKFIGIR 211
           ++ L P++      N    I            P+W LS+QTHK  GI 
Sbjct: 176 KYYLSPLE-HDGSMNIQQTIKIIGELNGLKIGPRWELSLQTHKLAGIE 222


>gi|167856373|ref|ZP_02479100.1| hypothetical protein HPS_10855 [Haemophilus parasuis 29755]
 gi|167852511|gb|EDS23798.1| hypothetical protein HPS_10855 [Haemophilus parasuis 29755]
          Length = 204

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 101/221 (45%), Gaps = 35/221 (15%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y I EIF TLQGEG + G  ++F RF  CNL            C +CDT++         
Sbjct: 6   YRIVEIFETLQGEGFNTGMPSIFIRFGKCNL-----------ACPWCDTNY--------N 46

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTI 122
           +Y    LAD+++   +      +  ++TGGEP +Q     L+  L   G+ IA+ETNG  
Sbjct: 47  QYETKTLADIMQ---VVKGFSAKNIIITGGEPTIQLDLTYLLDTLKAEGYFIAIETNGLK 103

Query: 123 EPPQGIDWICVSPKA-----GCDLKIKGGQELKLVFPQVNVSPENYIG--FDFERFSLQP 175
             P  ID+I  SPK           I    E+++V     ++    I      ER+ L P
Sbjct: 104 PVPPQIDYIATSPKRLYQKNYLKHHIPFANEVRIVVDGDVLAFCEQIESTIKAERYYLSP 163

Query: 176 MDG----PFLEENTNLA-ISYCFQNPKWRLSVQTHKFIGIR 211
            +       LE  T L  ++     P+W+LS+QTHK  GI 
Sbjct: 164 CEENGVMNMLETITQLGKLNQRPNKPRWQLSIQTHKMAGIE 204


>gi|254526725|ref|ZP_05138777.1| radical activating enzyme [Prochlorococcus marinus str. MIT 9202]
 gi|221538149|gb|EEE40602.1| radical activating enzyme [Prochlorococcus marinus str. MIT 9202]
          Length = 227

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 67/236 (28%), Positives = 100/236 (42%), Gaps = 45/236 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I E F +LQGEG HAG+ A F R +GC              C +CDT     +     
Sbjct: 9   LPIVEQFHSLQGEGYHAGKSAFFVRLAGC-----------KVGCSWCDTKNSWDE----K 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGFEIAV 116
           +Y    +  +I+   I  +K   +CV+TGGEPL        +A+ K          +I +
Sbjct: 54  KYPSISIKKIIDRIKIARDKGASFCVITGGEPLQHNLDNFCKAIKKMTMREEQNSMKIHI 113

Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLK---IKGGQEL-----------------KLVFPQV 156
           ET+G        DW+ +SPK     K   +K   E+                 K    Q 
Sbjct: 114 ETSGVNSISGSYDWMTLSPKRHSPPKNYFLKNCNEIKIIINDIKDIEFAIQIKKETLKQY 173

Query: 157 NVSP-ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            +S  E+ +  + + F LQP          +LAI +   NP W+LS+QTHK++ I+
Sbjct: 174 QLSKSEDGLKREDKIFYLQPA--WNNSNGLSLAIDFVKNNPDWKLSLQTHKYLKIK 227


>gi|268680497|ref|YP_003304928.1| radical SAM protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268618528|gb|ACZ12893.1| Radical SAM domain protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 192

 Score =  185 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 91/212 (42%), Gaps = 23/212 (10%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + E+F ++QGEG   G  ++F R  GCNL            C FCD +   +     
Sbjct: 1   MLKVVEMFYSIQGEGTQVGVPSIFIRLYGCNL-----------SCSFCDEE---LHKGAY 46

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG-T 121
              + D + + I+             ++TGGEP +      I  L    + ++VETNG  
Sbjct: 47  EELSFDAVLERIKA------YPSMNVIITGGEPSIYDLNGFIDFLQAHMYAVSVETNGYN 100

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF- 180
                  +WI  SPK    +   G  E+K +  + +   +      ++   +QP +    
Sbjct: 101 FSNIASANWITYSPKDWNHIAKHGYDEVKFIVSKDSDVSKLLDFKSYKPLFIQPQNNAHT 160

Query: 181 -LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             +EN    I++   NP++ LSVQ HKF+G+ 
Sbjct: 161 PNQENLAFCIAFVKANPRFILSVQLHKFLGVE 192


>gi|186474664|ref|YP_001863635.1| hypothetical protein Bphy_7690 [Burkholderia phymatum STM815]
 gi|184198623|gb|ACC76585.1| conserved hypothetical protein [Burkholderia phymatum STM815]
          Length = 235

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 95/240 (39%), Gaps = 52/240 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
           Y + EIF +LQGEG   G  +VF R  GC +            C +CD+           
Sbjct: 16  YPVNEIFESLQGEGNFTGTPSVFVRLQGCPV-----------GCAWCDSKHTWQVMPERE 64

Query: 57  ----IQGTKGGRY-------NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
                 G K GR        +V  LA+++         +  + V+TGGEP +    PLI 
Sbjct: 65  ISVGAMGEKTGRPCDSYAWCDVPTLANIVRAA------DAEHVVITGGEPCMYDLRPLIA 118

Query: 106 ALNKRGFEIAVETNGT-IEPPQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ-- 155
            L      + VET+GT +       ++  SPK G        D  ++   E+K    +  
Sbjct: 119 KLQAWHHRVQVETSGTYVPLVTPSTFVTTSPKYGMPSGRPVLDEALERANEIKYPVGKQR 178

Query: 156 -VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            +++  E        R     LQP+        T + +        WR+S+QT+KFI IR
Sbjct: 179 DIDIVLERLDPIQRARGTPIWLQPLS--LSSRATGICMK-AAHRYGWRVSLQTNKFINIR 235


>gi|157964748|ref|YP_001499572.1| organic radical activating protein [Rickettsia massiliae MTU5]
 gi|157844524|gb|ABV85025.1| Organic radical activating enzyme [Rickettsia massiliae MTU5]
          Length = 231

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 102/224 (45%), Gaps = 38/224 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           ++ IF T+QGEG   G  A+F R  GCNL            C FCDT+F           
Sbjct: 26  VQSIFKTIQGEGIFVGCPAIFIRLGGCNL-----------ACNFCDTEFEDFD-----LV 69

Query: 66  NVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122
           ++DQ+ + +E   +    EK     V+TGGEP+ Q    L Q L  R  ++ +ETNGT+ 
Sbjct: 70  DIDQILNKVESLALNSKNEKSINLVVITGGEPMRQPIELLCQKLLDRDVKVQIETNGTLY 129

Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQEL------------KLVFPQVNVSPENYIGFDFE 169
              PQ +  IC SPKAG     K  +EL            K +     +       ++  
Sbjct: 130 RSLPQEVSIIC-SPKAGKTGYSKIREELLPKISAVKFIVAKNILEYSLIPEVGQTSYNIP 188

Query: 170 RFSLQPMDGPFLE---ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            F +QPMD        EN  LA+    ++   RLS+QTHKF+ I
Sbjct: 189 VF-IQPMDQNDQRLNGENNELAVKLALES-GARLSLQTHKFLNI 230


>gi|157803532|ref|YP_001492081.1| 50S ribosomal protein L35 [Rickettsia canadensis str. McKiel]
 gi|157784795|gb|ABV73296.1| 50S ribosomal protein L35 [Rickettsia canadensis str. McKiel]
          Length = 225

 Score =  177 bits (451), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 103/224 (45%), Gaps = 38/224 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           +K IF T+QGEG   G  A+F R  GCNL            C FCDT+F           
Sbjct: 20  VKSIFKTIQGEGIFVGSPAIFVRLGGCNL-----------ACHFCDTEFEDFD-----LV 63

Query: 66  NVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122
           ++ ++ + +E   +    EK     V+TGGEP+ Q    L Q L  R F++ +ETNGT+ 
Sbjct: 64  DITEILNKVESLALNSKNEKSVNLVVITGGEPMRQPIALLCQKLLDRDFKVQIETNGTLY 123

Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQEL------------KLVFPQVNVSPENYIGFDFE 169
              P  +  IC SPKAG     K  ++L            K +     +       ++  
Sbjct: 124 RSLPNEVSIIC-SPKAGQTGYSKIREDLLSQISAVKFIVAKNILEYSFIPEVGQTAYNIP 182

Query: 170 RFSLQPMDG---PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            F +QPMD       +EN  LA+    ++   +LS+QTHKF+GI
Sbjct: 183 VF-VQPMDQNNPKLNDENNALAVKLALESGS-KLSLQTHKFLGI 224


>gi|320335721|ref|YP_004172432.1| Radical SAM domain-containing protein [Deinococcus maricopensis DSM
           21211]
 gi|319757010|gb|ADV68767.1| Radical SAM domain protein [Deinococcus maricopensis DSM 21211]
          Length = 230

 Score =  177 bits (450), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 82/218 (37%), Gaps = 24/218 (11%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK Y + E F T QGEG H GR A F R  GC              C +CD+     +  
Sbjct: 1   MK-YPVYERFYTWQGEGVHLGRAAYFVRLYGCP-----------QACPWCDSAGTWHRDY 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           +     +    + I +       +G   V+TGGEP+L     L+ AL+  G  + +ET+G
Sbjct: 49  RPDGVTLMTAHE-IAQAVAAESPDGAVVVITGGEPILFDLTALVDALHALGRRVHLETSG 107

Query: 121 TIEPPQGIDWICVSPK----AGCDLKIKGGQELKLVFPQVNVSPENYIGF----DFERFS 172
                  +DW+ +SPK          ++   E+K++    +             D     
Sbjct: 108 IAPLRGHLDWVTLSPKPFGTPPLPEVVQRAHEVKIIVHDPSDIDAGLATLDGLPDDAVIW 167

Query: 173 LQPMDGPFLEEN---TNLAISYCFQNPKWRLSVQTHKF 207
           L P      E +    N        +P+ R   Q HK 
Sbjct: 168 LHPEWSRARERDPAVLNAITETVKASPRLRAGYQMHKL 205


>gi|213586502|ref|ZP_03368328.1| hypothetical protein SentesTyph_36610 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 170

 Score =  177 bits (450), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 68/173 (39%), Gaps = 40/173 (23%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLFSILAKTKESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLTDL 107

Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL 151
           L K GF   +ET+GT E       W+ VSPK             ++   E+K 
Sbjct: 108 LEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKH 160


>gi|67458743|ref|YP_246367.1| organic radical activating protein [Rickettsia felis URRWXCal2]
 gi|67004276|gb|AAY61202.1| Organic radical activating enzymes [Rickettsia felis URRWXCal2]
          Length = 225

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 104/225 (46%), Gaps = 38/225 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           ++ IF T+QGEG   G  A+F R  GCNL            C FCDT+F           
Sbjct: 20  VQSIFKTIQGEGIFVGCPAIFIRLGGCNL-----------ACNFCDTEF-----EDFKLV 63

Query: 66  NVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122
           ++ ++ + +E   +    EK     V+TGGEP+ Q    L Q L  + F+I +ETNGT+ 
Sbjct: 64  DIAEILNKVESLALNSKNEKSINLVVITGGEPMRQPIELLCQKLLDQDFKIQIETNGTLY 123

Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQEL------------KLVFPQVNVSPENYIGFDFE 169
              P  +  IC SPKAG +   K  ++L            K +     +       ++  
Sbjct: 124 RSLPNEVSIIC-SPKAGKNGYSKIREDLLPKISAVKFIIAKNILEYSLIPEVGQTSYNIP 182

Query: 170 RFSLQPM---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            F +QPM   D    +EN  LA+    ++   RLS+QTHKF+GI 
Sbjct: 183 VF-VQPMDQNDQSLNDENNELAVKLALES-GARLSLQTHKFLGIE 225


>gi|226354845|ref|YP_002784585.1| organic radical activating enzyme [Deinococcus deserti VCD115]
 gi|226316835|gb|ACO44831.1| putative Organic radical activating enzyme [Deinococcus deserti
           VCD115]
          Length = 230

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 87/221 (39%), Gaps = 30/221 (13%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK Y + E F T QGEG H GR A F R  GC             +C +CD+     +  
Sbjct: 1   MK-YPVFERFYTWQGEGVHLGRAAYFVRLYGCP-----------QECPWCDSAGTWHKDY 48

Query: 61  KGG---RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +         + +A  + ++   G       V+TGGEP+L    PL++AL+  G  + +E
Sbjct: 49  RPAGVQLMTPEAIAACVAQESPEGA----VVVITGGEPILFDLTPLVEALHGLGRRVHLE 104

Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKG----GQELKLVFPQVNVSPENYIGF----DFE 169
           T+G       IDW+ +SPK    L +        E+K++    +   +         D  
Sbjct: 105 TSGIAPLRGAIDWVTLSPKPFGTLPLPSVVQQAHEVKIIVHDTSDIRDGLATLDGLKDDA 164

Query: 170 RFSLQPMDGPFLEEN---TNLAISYCFQNPKWRLSVQTHKF 207
              L P      E +    N        NP+ R   Q HK 
Sbjct: 165 VIWLHPEWSKARERDAAVLNAITEAVKANPRLRAGYQMHKL 205


>gi|209525918|ref|ZP_03274452.1| Radical SAM domain protein [Arthrospira maxima CS-328]
 gi|209493595|gb|EDZ93916.1| Radical SAM domain protein [Arthrospira maxima CS-328]
          Length = 204

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 96/225 (42%), Gaps = 35/225 (15%)

Query: 1   MKLYSIKEIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + E F  T+QGEG  AG    F R +GC +            C +CDT +    G
Sbjct: 1   MITIPVHETFQQTIQGEGYWAGTPVDFIRLAGCPV-----------GCPWCDTGYA--DG 47

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
            KG   N+    +L+ E            V++GGEP +   +P L++ L + G ++++ET
Sbjct: 48  GKGLPRNMRSFDELLAELV------SPRVVISGGEPFIYPQLPDLVRVLEETGRQVSIET 101

Query: 119 NGTIEPP-QGIDWICVSPKAGCDLKIK-------GGQELKLVFPQVNVSPENYIGFDFER 170
           +G        + WI +SPK     +            E+KLV   V    E Y     E 
Sbjct: 102 SGAFWQDVSDLCWITLSPKEHISPRYPVVSQMWRRASEIKLVID-VGDELEFYRSRLAEN 160

Query: 171 ----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                 LQP     ++    L ++   Q P +RLSVQ HK+IG+ 
Sbjct: 161 STIPVFLQPQ-WTDIDRTLPLVLAKLKQFPGYRLSVQLHKYIGVE 204


>gi|284050732|ref|ZP_06380942.1| hypothetical protein AplaP_04589 [Arthrospira platensis str.
           Paraca]
 gi|291570892|dbj|BAI93164.1| possible organic radical activating enzyme [Arthrospira platensis
           NIES-39]
          Length = 204

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 95/229 (41%), Gaps = 43/229 (18%)

Query: 1   MKLYSIKEIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + E F  T+QGEG  AG    F R +GC +            C +CDT +    G
Sbjct: 1   MITIPVHETFQQTIQGEGYWAGTPVDFIRLAGCPV-----------GCPWCDTGYA--DG 47

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
            KG   NV     L+ E            V++GGEP +   +P L++ L   G ++++ET
Sbjct: 48  GKGLPRNVRSFDQLLAELV------SPRVVISGGEPFIYPQLPDLVRVLEDSGRQVSIET 101

Query: 119 NGTIEPP-QGIDWICVSPKAG-------CDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
           +G        + WI +SPK              +   E+KLV     +   + + F   R
Sbjct: 102 SGAFWQDVSDLCWITLSPKEHISPGYPVVSPMWRRASEIKLV-----IDVGDELEFYGCR 156

Query: 171 F--------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                     LQP     +E    L +    Q P +RLSVQ HK+IG++
Sbjct: 157 LAENSTIPVFLQPQ-WTDIERTLPLVLEKLKQFPGYRLSVQLHKYIGVQ 204


>gi|91205678|ref|YP_538033.1| organic radical activating protein [Rickettsia bellii RML369-C]
 gi|157826864|ref|YP_001495928.1| organic radical activating protein [Rickettsia bellii OSU 85-389]
 gi|91069222|gb|ABE04944.1| Organic radical activating enzymes [Rickettsia bellii RML369-C]
 gi|157802168|gb|ABV78891.1| Organic radical activating enzymes [Rickettsia bellii OSU 85-389]
          Length = 225

 Score =  174 bits (443), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 99/222 (44%), Gaps = 38/222 (17%)

Query: 9   IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68
           IF T+QGEG   G  A+F R  GCNL            C FCDT+F            +D
Sbjct: 23  IFKTIQGEGIFVGVPAIFIRLGGCNL-----------ACDFCDTEF-----ENFETIKID 66

Query: 69  QLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI--EP 124
            +   +         E+  +  V+TGGEP+ Q    L Q L ++ F++ +ETNGT+    
Sbjct: 67  DILSKVNLLALNSKNEQSVKLVVITGGEPMRQPIELLCQKLLEQDFKVQIETNGTLYRSL 126

Query: 125 PQGIDWICVSPKAGCDLKIKGGQEL------------KLVFPQVNVSPENYIGFDFERFS 172
           P  +  IC SPKAG     K  ++L            K +     +       ++   F 
Sbjct: 127 PDEVSIIC-SPKAGKKGYSKIREDLLPKISAVKFIIAKNILEYSLIPEIGQTAYNIPVF- 184

Query: 173 LQPM---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +QPM   D    +EN  LA+    ++   RLSVQTHKFIGI 
Sbjct: 185 VQPMDQNDQKLNKENNELAVKLALES-GARLSVQTHKFIGIE 225


>gi|239948218|ref|ZP_04699971.1| queuosine biosynthesis protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922494|gb|EER22518.1| queuosine biosynthesis protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 225

 Score =  174 bits (442), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 101/223 (45%), Gaps = 36/223 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           ++ IF T+QGEG   G  A+F R  GCNL            C FCDT+F           
Sbjct: 20  VQSIFKTIQGEGIFVGCPAIFIRLGGCNL-----------ACNFCDTEFEDFD-----LV 63

Query: 66  NVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122
           ++D++ + +E        EK     V+TGGEP+ Q    L   L    F++ +ETNGT+ 
Sbjct: 64  DIDKILNKVEILALNSKNEKSINLVVITGGEPMRQPIELLCHKLLDLDFKVQIETNGTLY 123

Query: 123 -EPPQGIDWICVSPKAGCDLK-------IKGGQELKLVFP----QVNVSPENYIGFDFER 170
              P+G+  IC SPKAG           +     +K +      + ++ PE         
Sbjct: 124 RSLPKGVSIIC-SPKAGKTGYSKIRENLLPKISAVKFIVAKNILEYSIIPEVGQTSYNIP 182

Query: 171 FSLQPMDGP---FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             +QPMD       +EN  LA+    ++   RLS+QTHKF+ I
Sbjct: 183 VFIQPMDQNNQRLNDENNELAVKLALES-GARLSLQTHKFLNI 224


>gi|300869302|ref|ZP_07113893.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300332679|emb|CBN59091.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 210

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 33/221 (14%)

Query: 4   YSIKEIFLT-LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             I E F + +QGEG  +G +  F R +GC +            C +CDT +   +G K 
Sbjct: 10  LPIHETFQSTVQGEGYWSGTLVDFIRLAGCPV-----------HCPWCDTGYS--EGGKD 56

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI-QALNKRGFEIAVETNGT 121
                  + +L+ E            V++GGEP +  ++PL+ ++L + G ++++ET+G+
Sbjct: 57  LPNVQRSIVELLTELK------SPRVVISGGEPFIHKNLPLLVESLLEVGKQVSIETSGS 110

Query: 122 IEPP-QGIDWICVSPKAGCDLKIK-------GGQELKLVF---PQVNVSPENYIGFDFER 170
                 G  WI +SPK   + K            E+KLV     +VN   +  +      
Sbjct: 111 HWQEVAGETWITLSPKEHVNPKYPVQEKFWSRANEIKLVISTGEEVNFYRDGLVSNPNIP 170

Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             LQP +         + +    QNP +RLS+QTHK IG++
Sbjct: 171 VFLQP-EWSDRFRAIPIILQLLQQNPGYRLSLQTHKLIGVQ 210


>gi|117923944|ref|YP_864561.1| radical SAM protein [Magnetococcus sp. MC-1]
 gi|117607700|gb|ABK43155.1| Radical SAM domain protein [Magnetococcus sp. MC-1]
          Length = 204

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/216 (31%), Positives = 95/216 (43%), Gaps = 24/216 (11%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
            Y+I +IF ++QGE  H G   VF RFSGC L           +C +CD   +  Q  K 
Sbjct: 4   TYAICDIFHSIQGEATHTGLPMVFIRFSGCPL-----------RCSWCDEP-LHRQADKA 51

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG- 120
               + QL   I E            +LTGGEPL+   +  L+     +G+ IA+ET G 
Sbjct: 52  EHLTLTQLRSRILELAP----HTTNLLLTGGEPLMAPHLDRLVDYFKDQGYWIAMETCGE 107

Query: 121 TIEPPQGIDWICVSPKAGCDLKI-KGGQELKLVF--PQVNVSPENYIGFDFERFSLQPMD 177
             E P  +DW+ +SPK      + +   E+KLV          E           LQP  
Sbjct: 108 GGEIPAEVDWVTLSPKNQLPQSLYERADEVKLVLGADADQSDKERLTQCHHPNLWLQPRA 167

Query: 178 GPFLEE--NTNLAISYCFQNPK-WRLSVQTHKFIGI 210
            P   +     L   +  ++   WRLS+QTHK+IG+
Sbjct: 168 LPTGPDPMAVALCYRWALESGGAWRLSLQTHKYIGV 203


>gi|15892856|ref|NP_360570.1| hypothetical protein RC0933 [Rickettsia conorii str. Malish 7]
 gi|34581434|ref|ZP_00142914.1| hypothetical protein [Rickettsia sibirica 246]
 gi|157828787|ref|YP_001495029.1| hypothetical protein A1G_05140 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933515|ref|YP_001650304.1| queuosine biosynthesis protein [Rickettsia rickettsii str. Iowa]
 gi|229586950|ref|YP_002845451.1| Organic radical activating enzyme [Rickettsia africae ESF-5]
 gi|15620043|gb|AAL03471.1| unknown [Rickettsia conorii str. Malish 7]
 gi|28262819|gb|EAA26323.1| unknown [Rickettsia sibirica 246]
 gi|157801268|gb|ABV76521.1| hypothetical protein A1G_05140 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908602|gb|ABY72898.1| queuosine biosynthesis protein [Rickettsia rickettsii str. Iowa]
 gi|228022000|gb|ACP53708.1| Organic radical activating enzyme [Rickettsia africae ESF-5]
          Length = 225

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 101/224 (45%), Gaps = 38/224 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           ++ IF T+QGEG   G  A+F R  GCNL            C FCDT+F           
Sbjct: 20  VQSIFKTIQGEGIFVGCPAIFIRLGGCNL-----------ACNFCDTEFEDFD-----LV 63

Query: 66  NVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122
           ++D++ + +E   +    EK     V+TGGEP+ Q    L Q L  R  ++ +ETNGT+ 
Sbjct: 64  DIDKILNKVESLALNSKNEKSINLVVITGGEPMRQPIELLCQKLLDRDVKVQIETNGTLY 123

Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQEL------------KLVFPQVNVSPENYIGFDFE 169
              P+ +  IC SPK G     K  ++L            K +     +       ++  
Sbjct: 124 RSLPKEVSIIC-SPKVGKTGYSKIREDLLPKISAVKFIVAKNILEYSLIPEVGQTSYNIP 182

Query: 170 RFSLQPMDGPFLE---ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            F +QPMD        EN  LA+    ++   RLS+QTHKF+ I
Sbjct: 183 VF-IQPMDQNNQRLNGENNELAVKLALES-GARLSLQTHKFLNI 224


>gi|258593846|emb|CBE70187.1| Radical SAM domain protein [NC10 bacterium 'Dutch sediment']
          Length = 214

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 95/229 (41%), Gaps = 44/229 (19%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    + EIF ++QGE  +AGR  VF R +GCNL           +CR+CDT +   +  
Sbjct: 1   MMSLRVNEIFYSIQGESTYAGRPCVFVRLTGCNL-----------RCRWCDTTYAFHE-- 47

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
            G + +++Q+ + +         +     +TGGEPLLQ  V PLI  L   G+E+ +ET 
Sbjct: 48  -GEQRSIEQVLEQVR------GYKCPLVEITGGEPLLQEAVHPLIDRLLLEGYEVLIETG 100

Query: 120 GTIEPPQGIDWICV------SPKAGCDL--------KIKGGQELKLV------FPQVNVS 159
           G++   + +D   V      +P +G D          +    ++K V      +      
Sbjct: 101 GSLSIDR-LDRRVVKILDLKAPGSGMDPHNNLENLRHLDRKDQIKFVVADRRDYEWARRV 159

Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
              +   +       P+ G        LA          RL +Q HK++
Sbjct: 160 MAEHALAEKAHVLFSPVLGELHPR--ELAEWILTDRLNVRLQIQLHKYL 206


>gi|238650659|ref|YP_002916511.1| queuosine biosynthesis protein [Rickettsia peacockii str. Rustic]
 gi|238624757|gb|ACR47463.1| queuosine biosynthesis protein [Rickettsia peacockii str. Rustic]
          Length = 225

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 101/224 (45%), Gaps = 38/224 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           ++ IF T+QGEG   G  A+F R  GCNL            C FCDT+F           
Sbjct: 20  VQSIFKTIQGEGIFVGCPAIFIRLGGCNL-----------ACNFCDTEFEAFD-----LV 63

Query: 66  NVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122
           ++D++ + +E   +    EK     V+TGGEP+ Q    L Q L  R  ++ +ETNGT+ 
Sbjct: 64  DIDKILNKVESLALNSKNEKSINLVVITGGEPMRQPIELLCQKLLDRDVKVQIETNGTLY 123

Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQEL------------KLVFPQVNVSPENYIGFDFE 169
              P+ +  IC SPK G     K  ++L            K +     +       ++  
Sbjct: 124 RSLPKEVSIIC-SPKVGKTSYSKIREDLLPKISAVKFIVAKNILEYSLIPEVGQTSYNIP 182

Query: 170 RFSLQPMDGPFLE---ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
            F +QPMD        EN  LA+    ++   RLS+QTHKF+ I
Sbjct: 183 VF-IQPMDQNNQRLNGENNELAVKLALESGT-RLSLQTHKFLNI 224


>gi|157825999|ref|YP_001493719.1| organic radical activating protein [Rickettsia akari str. Hartford]
 gi|157799957|gb|ABV75211.1| Organic radical activating enzyme [Rickettsia akari str. Hartford]
          Length = 225

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 38/229 (16%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
               ++ IF T+QGEG   G  A+F R  GCNL            C FCDT+F       
Sbjct: 16  TTLEVQSIFKTIQGEGLFVGGPAIFIRLGGCNL-----------ACNFCDTEF-----ED 59

Query: 62  GGRYNVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
               ++ ++ + +E   +    E+     V+TGGEP+ Q    L Q L  + F++ +ETN
Sbjct: 60  FKLVDIVEILNKVESLALNSKNERAINLVVITGGEPMRQPIELLCQKLLDQDFKVQIETN 119

Query: 120 GTI--EPPQGIDWICVSPKAGCDLKIKGGQEL-------KLVFPQVNVSPENYIGFDFER 170
           GT+    P  +  IC SPKAG     K  ++L       K +  + N+   N+I    + 
Sbjct: 120 GTLYRALPNEVYIIC-SPKAGKTGYSKIREDLLSQISAVKFIVAK-NILEYNFIPEVGQT 177

Query: 171 -----FSLQPMDGP---FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                  +QPMD       +EN  LA+    ++   RLS+QTHK +GI 
Sbjct: 178 SYNIPVFIQPMDQNNQRLNDENNELAVKLALES-GARLSLQTHKILGIE 225


>gi|163781704|ref|ZP_02176704.1| hypothetical protein HG1285_02438 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882924|gb|EDP76428.1| hypothetical protein HG1285_02438 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 218

 Score =  171 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 99/226 (43%), Gaps = 39/226 (17%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
            S+ EI+ ++QGEG   G  ++F R  GCNL           +C +CD            
Sbjct: 12  LSVNEIYESIQGEGLLVGTPSIFIRLQGCNL-----------RCPWCDQPEAL--SFSNT 58

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
              V+ +   ++E         R+ V+TGGEP    ++  L++AL + GF + +ETNGT+
Sbjct: 59  TIPVEGILQKVQE------FPARHVVITGGEPFAHQNLHVLVRALIEEGFSLQIETNGTL 112

Query: 123 EPPQGID------WICVSPKAGCDL-----KIKGGQELKLVFPQ----VNVSPENYIG-F 166
              +G+D       I  SPKA  +       IK   ELK V  +      V  E + G  
Sbjct: 113 -WNEGLDSMAEQVHITCSPKAAANFFVNPRVIKHTNELKFVVDEEFSSDVVLREEFRGLL 171

Query: 167 DFERFSLQPMDGP--FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             E+  LQP      FL +  ++      +  K R+  Q HK +G+
Sbjct: 172 LAEKVVLQPEGNKVSFLRKALDIQRELSLKGFKVRVIPQVHKLLGL 217


>gi|320539607|ref|ZP_08039271.1| putative conserved protein [Serratia symbiotica str. Tucson]
 gi|320030219|gb|EFW12234.1| putative conserved protein [Serratia symbiotica str. Tucson]
          Length = 250

 Score =  170 bits (433), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 76/201 (37%), Gaps = 46/201 (22%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------------ 57
           F TLQGEG   G  A+F R  GC +            C +CDT                 
Sbjct: 63  FQTLQGEGFFTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKEVNREVDMQRI 111

Query: 58  -----QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF 112
                +    G  + +QL  ++ +Q        R+ V+TGGEP +   VPL   L ++G+
Sbjct: 112 LVKTEESATWGSASAEQLLAVMRQQG----YTARHVVITGGEPCIYDLVPLTALLEQQGY 167

Query: 113 EIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQ------VNV 158
              +ET+GT E    +  W+ VSPK          D  ++   E+K    +      ++ 
Sbjct: 168 GCQIETSGTYEIRCSVKTWVTVSPKVNMRGGMKVLDQALQRADEVKHPVARERDIEALDA 227

Query: 159 SPENYIGFDFERFSLQPMDGP 179
                        +LQP+   
Sbjct: 228 LLATLHDKKPRIIALQPISKK 248


>gi|154149814|ref|YP_001403432.1| radical SAM domain-containing protein [Candidatus Methanoregula
           boonei 6A8]
 gi|153998366|gb|ABS54789.1| Radical SAM domain protein [Methanoregula boonei 6A8]
          Length = 202

 Score =  170 bits (433), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 99/226 (43%), Gaps = 44/226 (19%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            I EIF +LQGEG   G   +F R +GCNL            CR+CDT +    GT+   
Sbjct: 2   KIAEIFKSLQGEGVRQGTPCIFIRLAGCNL-----------ACRWCDTQYARSGGTETSC 50

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTI 122
                   ++EE W   ++  R   +TGGEPLLQ  V +PL+ +L+KRG  I +ETNGTI
Sbjct: 51  ------DKILEEIW---KENPRSVCITGGEPLLQTDVLLPLLASLHKRGITIDIETNGTI 101

Query: 123 EPPQ-------GIDWICVSPKAGCDL----KIKGGQELKLVFPQVNVSPENYIGFDFERF 171
           +           +D  C S     DL    +I+    +K V    +++   Y      R 
Sbjct: 102 DFSPVQPFAAVCMDVKCPSSGERSDLSLLARIRPTDSVKFVV--GDLADCRYAQEVLARH 159

Query: 172 ------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                  L P+ G   +      +     N   R  +Q HK +G++
Sbjct: 160 AIAGECFLSPVYGTDCDTIVRFILD---NNLPVRFQLQLHKILGVK 202


>gi|227827777|ref|YP_002829557.1| radical SAM protein [Sulfolobus islandicus M.14.25]
 gi|227830487|ref|YP_002832267.1| radical SAM protein [Sulfolobus islandicus L.S.2.15]
 gi|229579299|ref|YP_002837697.1| Radical SAM domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|229581941|ref|YP_002840340.1| Radical SAM domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|229585048|ref|YP_002843550.1| Radical SAM domain protein [Sulfolobus islandicus M.16.27]
 gi|238619949|ref|YP_002914775.1| Radical SAM domain protein [Sulfolobus islandicus M.16.4]
 gi|284997981|ref|YP_003419748.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5]
 gi|227456935|gb|ACP35622.1| Radical SAM domain protein [Sulfolobus islandicus L.S.2.15]
 gi|227459573|gb|ACP38259.1| Radical SAM domain protein [Sulfolobus islandicus M.14.25]
 gi|228010013|gb|ACP45775.1| Radical SAM domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|228012657|gb|ACP48418.1| Radical SAM domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|228020098|gb|ACP55505.1| Radical SAM domain protein [Sulfolobus islandicus M.16.27]
 gi|238381019|gb|ACR42107.1| Radical SAM domain protein [Sulfolobus islandicus M.16.4]
 gi|284445876|gb|ADB87378.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5]
 gi|323477585|gb|ADX82823.1| Radical SAM domain protein [Sulfolobus islandicus HVE10/4]
          Length = 208

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 103/231 (44%), Gaps = 43/231 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK Y + EIF ++QGEG   G  + F R + CNL           +C +CDT +      
Sbjct: 1   MK-YRVIEIFTSVQGEGEVIGTPSNFIRLATCNL-----------RCVWCDTKYSW---E 45

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
            G    +D++   I+       K+ R   +TGGEPLLQ  VPL + L   G +I +ETNG
Sbjct: 46  IGTEMTIDEIIAKID-------KKIRTTTITGGEPLLQNVVPLAKELKSIGHKIVIETNG 98

Query: 121 TIEPPQG----IDWICVSPK---AGCDLKIKGGQEL----KLVFPQVNVSPENYIGF--- 166
           TI+P +     ID   VSPK   +G  LK     +     K V    N   +  I F   
Sbjct: 99  TIKPSEELRKIIDVFSVSPKLSNSGHKLKYDFSDDWATYYKFVIVYPNKDIDEVIKFVES 158

Query: 167 ---DFERFSLQPMDGPFLE--ENTNLAISYCFQN-PKWRLSVQTHKFIGIR 211
              +  +  LQP DG   +     N  +        ++R+  Q H+ IG+R
Sbjct: 159 QNINPRKVILQP-DGNRSDYINAINEIVQIVLDRGLQFRVLPQLHRIIGVR 208


>gi|294055328|ref|YP_003548986.1| Radical SAM domain protein [Coraliomargarita akajimensis DSM 45221]
 gi|293614661|gb|ADE54816.1| Radical SAM domain protein [Coraliomargarita akajimensis DSM 45221]
          Length = 226

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 82/216 (37%), Gaps = 28/216 (12%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           K   + E F + QGEG HAGR A F R  GC +            C +CD+      GT 
Sbjct: 3   KQLPVHEQFYSFQGEGCHAGRAAYFIRLFGCPV-----------HCPWCDSA-----GTW 46

Query: 62  GGRYNVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
              Y  + +  ++    +    +    + V+TGGEP +     L   L + G+ + +ET+
Sbjct: 47  HPDYVPESIDRVLANDLLASVQKTAAEFVVITGGEPAIHDLSELTAVLRRAGYPVHLETS 106

Query: 120 GTIEPPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQVNVSPENYIGFD----FERFS 172
           G  E     DW+ +SPK         +K   E KL+  ++    E Y             
Sbjct: 107 GAFELKGVFDWVTLSPKRWKLPLPENLKRADEFKLIVDELGA-IEEYARLPGVLRSVPVW 165

Query: 173 LQP-MDGPFLEENTNLAISYCFQN-PKWRLSVQTHK 206
           L P       +   +    +   +   +R   Q HK
Sbjct: 166 LHPEWSQQRNQAILSAITEWVKAHGAPFRAGWQMHK 201


>gi|325283487|ref|YP_004256028.1| Radical SAM domain-containing protein [Deinococcus proteolyticus
           MRP]
 gi|324315296|gb|ADY26411.1| Radical SAM domain protein [Deinococcus proteolyticus MRP]
          Length = 285

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 55/219 (25%), Positives = 79/219 (36%), Gaps = 31/219 (14%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y + E F T QGEG H GR A F R  GC              C +CD+      GT   
Sbjct: 58  YPVYERFYTWQGEGVHLGRAAYFIRLYGCP-----------QHCPWCDSA-----GTWHP 101

Query: 64  RYNVDQL----ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
            Y  + +    A  + +        G   ++TGGEP+L    PL  AL+  G  + +ET+
Sbjct: 102 EYRPESVGLMDAQALADAVAAESPAGAVVIITGGEPILFDLAPLTDALHAIGRRVHIETS 161

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIK----GGQELKLVFPQVNVSPENYIGFDFER----F 171
           G       +DW+ +SPK      +        E+K++  +           D  R     
Sbjct: 162 GIAPLRGELDWVTLSPKPTQKWPLPEVVAHADEVKIIVHEPQDIAAGLATLDGLRDDAVI 221

Query: 172 SLQPMDGPFLEENTN---LAISYCFQNPKWRLSVQTHKF 207
            L P      E               +P+ R   Q HK 
Sbjct: 222 WLHPEWSRAREREMRVLNAITEAVKADPRLRAGYQMHKL 260


>gi|15604457|ref|NP_220975.1| hypothetical protein RP607 [Rickettsia prowazekii str. Madrid E]
 gi|3861151|emb|CAA15051.1| unknown [Rickettsia prowazekii]
          Length = 234

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 38/225 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           ++ IF T+QGEG   G  ++F R  GCNL            C FCDT+F           
Sbjct: 29  VQSIFKTIQGEGIFVGYPSIFIRLGGCNL-----------ACNFCDTEF-----EDFKLI 72

Query: 66  NVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122
           ++DQ+ + ++         K     V+TGGEP+ Q    L Q L  + F++ +ETNGT+ 
Sbjct: 73  DIDQILNKVKNLSLNSKNAKTINLVVITGGEPMRQPIGLLCQKLLDQDFKVQIETNGTLY 132

Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQEL------------KLVFPQVNVSPENYIGFDFE 169
              P+ +  +C SPK G     K  ++L            K +     +       +D  
Sbjct: 133 RSLPKEVFIVC-SPKVGKTGYNKIREDLLPQISAVKFIISKNIVEYSIIPEVGQSAYDIP 191

Query: 170 RFSLQPMDGPF---LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            F +Q MD        EN  LA+    ++   RLS+QTHKF+GI 
Sbjct: 192 VF-VQSMDQNDKRLNNENNELAVKLALES-GARLSLQTHKFLGIE 234


>gi|292572231|gb|ADE30146.1| Organic radical activating enzyme [Rickettsia prowazekii Rp22]
          Length = 225

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 38/225 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           ++ IF T+QGEG   G  ++F R  GCNL            C FCDT+F           
Sbjct: 20  VQSIFKTIQGEGIFVGYPSIFIRLGGCNL-----------ACNFCDTEF-----EDFKLI 63

Query: 66  NVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122
           ++DQ+ + ++         K     V+TGGEP+ Q    L Q L  + F++ +ETNGT+ 
Sbjct: 64  DIDQILNKVKNLSLNSKNAKTINLVVITGGEPMRQPIGLLCQKLLDQDFKVQIETNGTLY 123

Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQEL------------KLVFPQVNVSPENYIGFDFE 169
              P+ +  +C SPK G     K  ++L            K +     +       +D  
Sbjct: 124 RSLPKEVFIVC-SPKVGKTGYNKIREDLLPQISAVKFIISKNIVEYSIIPEVGQSAYDIP 182

Query: 170 RFSLQPMDGPF---LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            F +Q MD        EN  LA+    ++   RLS+QTHKF+GI 
Sbjct: 183 VF-VQSMDQNDKRLNNENNELAVKLALES-GARLSLQTHKFLGIE 225


>gi|146306312|ref|YP_001186777.1| radical SAM domain-containing protein [Pseudomonas mendocina ymp]
 gi|145574513|gb|ABP84045.1| Radical SAM domain protein [Pseudomonas mendocina ymp]
          Length = 226

 Score =  167 bits (425), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 92/232 (39%), Gaps = 51/232 (21%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   I EIF +LQGE   AG   VF R +GC L           +C++CDT +     + 
Sbjct: 14  ETLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDTAYAF---SG 59

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           G    +D + D +           RY  +TGGEPL Q + +PL+  L   G+E+++ET+G
Sbjct: 60  GEIVTLDSILDQVAA------YRPRYVCVTGGEPLAQPNCIPLLTRLCDAGYEVSLETSG 113

Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQELK----------LVFPQVNVSPENYIGFDF 168
            ++         V P+     DLK  G  E++              QV     +   +D+
Sbjct: 114 ALDVSA------VDPRVSKVLDLKTPGSAEVQRNRYENIEWLTANDQVKFVICSREDYDW 167

Query: 169 ERFSLQPMDGPFLE------------ENTNLAISYCFQNPKWRLSVQTHKFI 208
               L   D P               E   LA      N   RL +Q HK +
Sbjct: 168 AVSKLIQYDLPARAGEVLFSPSHKQVEARALADWIVADNLPVRLQLQLHKIL 219


>gi|323474845|gb|ADX85451.1| organic radical activating enzyme, NrdG [Sulfolobus islandicus
           REY15A]
          Length = 208

 Score =  167 bits (425), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 102/231 (44%), Gaps = 43/231 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK Y + EIF ++QGEG   G  + F R + CNL           +C +CDT +      
Sbjct: 1   MK-YRVIEIFTSVQGEGEVIGTPSNFIRLATCNL-----------RCVWCDTKYSW---E 45

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
            G    +D++   I+       K+ R   +TGGEPLLQ  VPL + L   G +I +ETNG
Sbjct: 46  IGTEMTIDEIIAKID-------KKIRTTTITGGEPLLQNVVPLAKELKSIGHKIVIETNG 98

Query: 121 TIEPPQG----IDWICVSPK---AGCDLKIKGGQEL----KLVFPQVNVSPENYIGF--- 166
           TI+P +     ID   VSPK   +G  LK     +     K V    N   +  I F   
Sbjct: 99  TIKPSEELRKIIDVFSVSPKLSNSGHKLKYDFSDDWATYYKFVIVYPNKDIDEVIKFVES 158

Query: 167 ---DFERFSLQPMDGPFLE--ENTNLAISYCFQN-PKWRLSVQTHKFIGIR 211
              +  +  LQP DG   +     N  +         +R+  Q H+ IG+R
Sbjct: 159 QNINPRKVILQP-DGNRSDYINAINEIVQIVLDRGLLFRVLPQLHRIIGVR 208


>gi|37522605|ref|NP_925982.1| hypothetical protein gll3036 [Gloeobacter violaceus PCC 7421]
 gi|35213606|dbj|BAC90977.1| gll3036 [Gloeobacter violaceus PCC 7421]
          Length = 214

 Score =  167 bits (425), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 59/218 (27%), Positives = 91/218 (41%), Gaps = 31/218 (14%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             ++E F  T+QGEG  AG V  F R  GC +            C +CDT +    G   
Sbjct: 16  IPVQETFGPTIQGEGYWAGAVVDFIRLYGCPV-----------GCPWCDTGYA--DGGPQ 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
               V   +DLI E            V++GGEP +   +P L++A+ + G  +A+ET+G 
Sbjct: 63  LPRAVRTFSDLILELK------SPRVVISGGEPFIHAALPALVEAIGRTGRAVAIETSGA 116

Query: 122 IEPP-QGIDWICVSPKAGCDLKIK-------GGQELKLVFPQ-VNVSPENYIGFDFERFS 172
              P     W+ +SPK     +            E+K+V      +             S
Sbjct: 117 FWQPVPDWAWVTLSPKEHVSPRHPVNPQMWRRANEVKIVIAGGAELDVYRRFLPPGVPVS 176

Query: 173 LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           LQP +    E    L +     +P++RLSVQ HK++ +
Sbjct: 177 LQP-EWEARERTLPLTLELLKAHPRYRLSVQLHKYLQV 213


>gi|51473785|ref|YP_067542.1| hypothetical protein RT0595 [Rickettsia typhi str. Wilmington]
 gi|51460097|gb|AAU04060.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington]
          Length = 231

 Score =  167 bits (424), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 100/225 (44%), Gaps = 38/225 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           ++ IF T+QGEG   G  ++F R  GCNL            C FCDT+F           
Sbjct: 26  VQSIFKTIQGEGIFVGYPSIFIRLGGCNL-----------ACNFCDTEF-----EDFELI 69

Query: 66  NVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI- 122
           ++DQ+ + ++         K     V+TGGEP+ Q    L Q L  + F++ +ETNGT+ 
Sbjct: 70  DIDQIINKVQNLSLNSKNSKTINLVVITGGEPMRQPIGLLCQKLLDQDFKVQIETNGTLY 129

Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQEL------------KLVFPQVNVSPENYIGFDFE 169
              P+G+  +C SPK G     K  ++L            K +     +       ++  
Sbjct: 130 RSLPKGVFIVC-SPKVGKTGYNKIREDLLPQVCAVKFIISKNIIEYSIIPEVGQSAYNIP 188

Query: 170 RFSLQPMDG---PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
            F +Q MD        EN  LA+    ++   RLS+Q HKF+GI 
Sbjct: 189 VF-VQSMDQNDKKLNAENNELAVKLALES-GARLSLQIHKFLGIE 231


>gi|292490344|ref|YP_003525783.1| radical SAM protein [Nitrosococcus halophilus Nc4]
 gi|291578939|gb|ADE13396.1| Radical SAM domain protein [Nitrosococcus halophilus Nc4]
          Length = 213

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 91/234 (38%), Gaps = 54/234 (23%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK   I EIF +LQGE    G   VF R +GC L           +C +CDT++    GT
Sbjct: 1   MKRLRITEIFHSLQGESRSVGWPTVFVRLTGCPL-----------RCHYCDTEYAFQGGT 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
                 +D++   + E         R+  +TGGEPL Q   + L+  L   G+E+++ET+
Sbjct: 50  ---WMELDEILATVAEFG------ARHVTVTGGEPLAQPACLELLTQLCDVGYEVSLETS 100

Query: 120 GTIEPPQGIDWICVSPKA--GCDLKIKGGQE-----------------LKLV------FP 154
           G ++         V P+     DLK  G  E                 +KLV      + 
Sbjct: 101 GALDISA------VDPRVVKVMDLKTPGSGEEARNSTTNLDYLSSQDQVKLVLCDRHDYE 154

Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
               + E +   +       P         T+LA          R+ +Q HK++
Sbjct: 155 WARTALERHRLAERCEVLFSPSYEQLSP--TDLAEWILEDRLPVRMQIQLHKYL 206


>gi|15921783|ref|NP_377452.1| hypothetical protein ST1490 [Sulfolobus tokodaii str. 7]
 gi|15622570|dbj|BAB66561.1| 212aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 212

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 102/231 (44%), Gaps = 39/231 (16%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y I EIF ++QGEG   G  + F R +GC+L           +C +CDT +   +  
Sbjct: 1   MVKYWISEIFTSIQGEGEVIGTPSNFIRLAGCHL-----------RCIWCDTKYAWHK-Y 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
            G   +++Q+ D I+       K  ++  +TGGEPLLQ  +PL++AL     ++ VET+G
Sbjct: 49  DGEEMSIEQILDKID-------KRIKFTTITGGEPLLQDILPLVEALKSLNHKVLVETSG 101

Query: 121 TIEPPQG----IDWICVSPK---AGCDLKIKGGQE-----LKLVFPQVNVSPENYIGF-- 166
           TI+P +     +D   VSPK   +G   K     +      K V        +  I F  
Sbjct: 102 TIKPSKKLRELVDIFSVSPKLSNSGYKFKYNFKDDNWVTYFKFVIVNPLEDIQEIIRFIR 161

Query: 167 ----DFERFSLQPMDGPFL-EENTNLAISYCFQ-NPKWRLSVQTHKFIGIR 211
               +  +  LQP        E     I    +    +R+  Q H+ +GI+
Sbjct: 162 ENNIEPSKVILQPDGRKENYTEGLRELIDIILKLGIPFRVLPQFHRIVGIQ 212


>gi|330811384|ref|YP_004355846.1| Putative radical SAM-superfamily protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379492|gb|AEA70842.1| Putative radical SAM-superfamily protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 215

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 98/233 (42%), Gaps = 55/233 (23%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I E+F +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               +  L D++E+         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G 
Sbjct: 51  ----LRTLDDILEQ---VASYRPRYVCVTGGEPLAQPNAIPLLKQLCDAGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQE--------LKLVFPQVNV-----SPENY--- 163
           ++         V P+     DLK  G +E        ++L+ P   V     S E+Y   
Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEAHRNRYENIELLTPNDQVKFVICSREDYDWA 157

Query: 164 --------IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                   +        L P          +LA      N   RL +Q HK++
Sbjct: 158 VSKLIQYGLDQRAGEVLLSP--SHHDLSARDLADWVVADNLPVRLQLQLHKYL 208


>gi|312962750|ref|ZP_07777238.1| queuosine biosynthesis protein QueE [Pseudomonas fluorescens WH6]
 gi|311282967|gb|EFQ61560.1| queuosine biosynthesis protein QueE [Pseudomonas fluorescens WH6]
          Length = 218

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 96/225 (42%), Gaps = 39/225 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I E+F +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 7   TLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 53

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               +  L D++E+       + RY  +TGGEPL Q + +PL++ L   G+E+++ET+G 
Sbjct: 54  ----IRTLDDILEQ---VAGYKPRYVCVTGGEPLAQPNAIPLLKQLCDAGYEVSLETSGA 106

Query: 122 IEPPQ-------GIDWICVSPKAGCDLKIKGG------QELKLVF---PQVNVSPENYIG 165
           ++           +D      K     + +         ++K V       + +    I 
Sbjct: 107 LDISAVDSRVSRVVDLKTPDSKEAHRNRYENIELLTPNDQVKFVICSRDDYDWATSKLIQ 166

Query: 166 FDFERFSLQPMDGPFLEE--NTNLAISYCFQNPKWRLSVQTHKFI 208
           +  ER + + +  P   +     LA      N   RL +Q HK++
Sbjct: 167 YGLERRAGEVLFSPSHHDLNARELADWVVADNLPVRLQLQLHKYL 211


>gi|229592292|ref|YP_002874411.1| putative radical SAM-superfamily protein [Pseudomonas fluorescens
           SBW25]
 gi|229364158|emb|CAY51804.1| putative radical SAM-superfamily protein [Pseudomonas fluorescens
           SBW25]
          Length = 215

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/231 (26%), Positives = 100/231 (43%), Gaps = 51/231 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I E+F +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               V  L D++E+       + RY  +TGGEPL Q + +PL++ L   G+E+++ET+G 
Sbjct: 51  ----VRTLDDILEQ---VAGYKPRYVCVTGGEPLAQPNAIPLLKQLCDAGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLVF---PQVNVS 159
           ++         V P+     DLK  G +E                 +K V       + +
Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEAHRNRYENIELLTANDQVKFVICSREDYDWA 157

Query: 160 PENYIGFDFERFSLQPMDGPFLEE--NTNLAISYCFQNPKWRLSVQTHKFI 208
               I +  +R + + +  P   +    +LA      N   RL +Q HK++
Sbjct: 158 NSKLIQYGLDRRAGEVLFSPSHHDLNARDLADWVVADNLPVRLQLQLHKYL 208


>gi|226328670|ref|ZP_03804188.1| hypothetical protein PROPEN_02565 [Proteus penneri ATCC 35198]
 gi|225203403|gb|EEG85757.1| hypothetical protein PROPEN_02565 [Proteus penneri ATCC 35198]
          Length = 152

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 65/155 (41%), Gaps = 33/155 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEVFQTLQGEGVFTGVPALFVRLQGCPV-----------GCSWCDTKHTWEKEDEKK 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +    G  +V Q+  L ++Q        ++ V+TGGEP L    PL + 
Sbjct: 52  VLLGDIPIKTQESDTWGEASVAQILSLFQQQG----YSAKHVVITGGEPCLYDLRPLTEG 107

Query: 107 LNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGCD 140
           L + GF   +ET+GT +       W+ +SPK G  
Sbjct: 108 LEQAGFACQIETSGTHDILCSEKTWVTLSPKVGMK 142


>gi|330959274|gb|EGH59534.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 215

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/231 (26%), Positives = 101/231 (43%), Gaps = 51/231 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               V  L D+IE+         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G 
Sbjct: 51  ----VQALDDIIEQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNV-SPENYIGF-----DFERFS 172
           ++         V P+     DLK  G +E+ +  +  + + +P + + F     +   ++
Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEVARNRYENIELLTPNDQVKFVLCSREDYDWA 157

Query: 173 LQPMDGPFLEENT---------------NLAISYCFQNPKWRLSVQTHKFI 208
           +  +    L+                  +LA      N   RL +Q HK +
Sbjct: 158 VSKLIQYGLDRRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208


>gi|77460620|ref|YP_350127.1| radical SAM family protein [Pseudomonas fluorescens Pf0-1]
 gi|77384623|gb|ABA76136.1| putative radical SAM-superfamily protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 215

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 51/231 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I E+F +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               +  L D++E+         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G 
Sbjct: 51  ----IRTLDDILEQ---VAGFRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVN-VSPENYIGF-----DFERFS 172
           ++         V P+     DLK    +E  +  +  ++ ++P + + F     +   ++
Sbjct: 104 LDISA------VDPRVSRVVDLKTPDSKEAHRNRYENIDLLTPNDQVKFVICSREDYDWA 157

Query: 173 LQPMDGPFLEE---------------NTNLAISYCFQNPKWRLSVQTHKFI 208
           +  +    LE                  +LA      N   RL +Q HK++
Sbjct: 158 VSKLIQYGLERRAGEVLFSPSHHDLNARDLADWVVADNLPVRLQLQLHKYL 208


>gi|15897539|ref|NP_342144.1| hypothetical protein SSO0624 [Sulfolobus solfataricus P2]
 gi|13813792|gb|AAK40934.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
          Length = 211

 Score =  165 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 103/231 (44%), Gaps = 43/231 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK Y + EIF ++QGEG   G  + F R + CNL           +C +CDT +      
Sbjct: 4   MK-YRVIEIFTSIQGEGEVIGIPSNFIRLATCNL-----------RCVWCDTKYSW---E 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
            G   ++D++   ++       K+ +   +TGGEPLLQ  +PL + L   G +I VETNG
Sbjct: 49  IGTEMSIDEIIAKLD-------KKIKTTTITGGEPLLQNILPLAKELKSIGHKIVVETNG 101

Query: 121 TIEPPQG----IDWICVSPK---AGCDLKIKGGQEL----KLVFPQVNVSPENYIGF--- 166
           TI+P +     ID   VSPK   +G  LK     +     K V    N   +  + F   
Sbjct: 102 TIKPSEELRKIIDIFSVSPKLSNSGHKLKYDFADDWATYYKFVIVYPNKDIDEVVKFVES 161

Query: 167 ---DFERFSLQPMDGPFLE--ENTNLAISYCFQN-PKWRLSVQTHKFIGIR 211
              +  +  LQP DG   +     N  +        ++R+  Q H+ IG R
Sbjct: 162 QSINPRKVILQP-DGNRSDYINAINEIVQIVLDRGLQFRVLPQLHRIIGAR 211


>gi|284174859|ref|ZP_06388828.1| hypothetical protein Ssol98_09426 [Sulfolobus solfataricus 98/2]
 gi|261602301|gb|ACX91904.1| Radical SAM domain protein [Sulfolobus solfataricus 98/2]
          Length = 208

 Score =  165 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 103/231 (44%), Gaps = 43/231 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK Y + EIF ++QGEG   G  + F R + CNL           +C +CDT +      
Sbjct: 1   MK-YRVIEIFTSIQGEGEVIGIPSNFIRLATCNL-----------RCVWCDTKYSW---E 45

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
            G   ++D++   ++       K+ +   +TGGEPLLQ  +PL + L   G +I VETNG
Sbjct: 46  IGTEMSIDEIIAKLD-------KKIKTTTITGGEPLLQNILPLAKELKSIGHKIVVETNG 98

Query: 121 TIEPPQG----IDWICVSPK---AGCDLKIKGGQEL----KLVFPQVNVSPENYIGF--- 166
           TI+P +     ID   VSPK   +G  LK     +     K V    N   +  + F   
Sbjct: 99  TIKPSEELRKIIDIFSVSPKLSNSGHKLKYDFADDWATYYKFVIVYPNKDIDEVVKFVES 158

Query: 167 ---DFERFSLQPMDGPFLE--ENTNLAISYCFQN-PKWRLSVQTHKFIGIR 211
              +  +  LQP DG   +     N  +        ++R+  Q H+ IG R
Sbjct: 159 QSINPRKVILQP-DGNRSDYINAINEIVQIVLDRGLQFRVLPQLHRIIGAR 208


>gi|300112861|ref|YP_003759436.1| radical SAM domain-containing protein [Nitrosococcus watsonii
           C-113]
 gi|299538798|gb|ADJ27115.1| Radical SAM domain protein [Nitrosococcus watsonii C-113]
          Length = 213

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 50/232 (21%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK   I EIF +LQGE    G    F R +GC L           +C +CDT++      
Sbjct: 1   MKRLRITEIFYSLQGEARSVGWPTAFVRLTGCPL-----------RCHYCDTEYAF---Q 46

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETN 119
            G    +D++ D++ E  +      R+  +TGGEPL+Q   + L+  L   G+E+++ET+
Sbjct: 47  GGNWMALDRILDVVAEFGV------RHVTVTGGEPLVQSACLELLTRLCDAGYEVSLETS 100

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQE-----------------LKLVFPQVNVSPEN 162
           G ++    ID   V      D K  G  E                 +KLV    N    +
Sbjct: 101 GALDIS-AIDCRVV---KVMDWKTPGSGEEARNLYTNLAHLSSQDQVKLVLC--NRHDYD 154

Query: 163 YIGFDFERFSL-QPMDGPFLEEN-----TNLAISYCFQNPKWRLSVQTHKFI 208
           +     +R  L +  D  F   +     T+LA          R+ +Q HK++
Sbjct: 155 WAKAVLDRHRLTEYCDVLFSPSHEQLSPTDLADWILADRLPVRMQIQLHKYL 206


>gi|152987293|ref|YP_001349882.1| radical activating enzyme [Pseudomonas aeruginosa PA7]
 gi|150962451|gb|ABR84476.1| probable radical activating enzyme [Pseudomonas aeruginosa PA7]
          Length = 215

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 51/232 (21%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   I EIF +LQGE   AG   VF R +GC L           +C +CDT +     + 
Sbjct: 3   QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 48

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           G   ++D + + +         + RY  +TGGEPL Q + +PL++ L   G+E+++ET+G
Sbjct: 49  GEIVSLDAILERVAA------YKPRYICVTGGEPLAQPNCIPLLERLCDAGYEVSLETSG 102

Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQE----------LKLVFPQVNVSPENYIGFDF 168
            ++  +      V P+     DLK  G  E          L     QV     +   +D+
Sbjct: 103 ALDVSR------VDPRVSKVLDLKTPGSGEVGRNRYENIPLLTANDQVKFVVCSREDYDW 156

Query: 169 E-----RFSLQPMDGPFL-------EENTNLAISYCFQNPKWRLSVQTHKFI 208
                  + L+   G  L        +   LA      N   RL +Q HK +
Sbjct: 157 AVSKLIEYRLEQRTGEVLFSPSHRQVDARELADWIVADNLPVRLQLQLHKIL 208


>gi|330834175|ref|YP_004408903.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4]
 gi|329566314|gb|AEB94419.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4]
          Length = 210

 Score =  164 bits (417), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 100/231 (43%), Gaps = 41/231 (17%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M+ Y I EIF ++QGEG   GR + F R +GCNL           +C +CDT    ++  
Sbjct: 1   MR-YWIVEIFTSIQGEGTLIGRPSNFVRLAGCNL-----------RCVWCDTKNSWMR-E 47

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
            G    ++ +   +           ++  +TGGEPLLQ  +PL  +L  +GF +A+ETNG
Sbjct: 48  DGEPMEIEDILSKL-------STSVKWTTITGGEPLLQDILPLAVSLKNKGFRVAIETNG 100

Query: 121 TIEPPQG----IDWICVSPK---AGCDLKIKGGQEL----KLVFPQVNVSPENYIGF--- 166
           T++P       +D   VSPK   +G  LK     +     K V        +    F   
Sbjct: 101 TLKPKPELRKVVDIFSVSPKLLNSGHRLKYDFSDDWATYYKFVIVNAKEDLKEVKDFVDR 160

Query: 167 ---DFERFSLQPMDGPFLE--ENTNLAISYCFQ-NPKWRLSVQTHKFIGIR 211
              D E+  +QP DG  L+             +    +R+  Q H+ I  R
Sbjct: 161 QHIDPEKVIVQP-DGNRLDYVYALRELSDAVMELGLPFRVLPQLHRIISYR 210


>gi|304312904|ref|YP_003812502.1| Putative radical activating enzyme [gamma proteobacterium HdN1]
 gi|301798637|emb|CBL46869.1| Putative radical activating enzyme [gamma proteobacterium HdN1]
          Length = 218

 Score =  164 bits (417), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 100/230 (43%), Gaps = 51/230 (22%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE    G   VF R +GC L           +C++CDT +     + G 
Sbjct: 8   LRITEIFHSLQGETRTLGLPTVFVRLTGCPL-----------RCQYCDTAYAF---SGGQ 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           + +++Q+ + +            Y  +TGGEPL Q + +PL+QAL  +G+E+++ET+G +
Sbjct: 54  QMSLEQILETV------AGFRTHYVTVTGGEPLAQPNCIPLLQALCDQGYEVSLETSGAL 107

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF--------DFERFS 172
           +  + ID   V      DLK  G  E+ + ++  +  + P + + F        D+ R  
Sbjct: 108 DISE-IDARVV---RVVDLKTPGSGEMHRNLYENIKYLQPHDQVKFVLCSRQDYDWARAK 163

Query: 173 L--------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           L               P  G    + T LA          R  +Q HK +
Sbjct: 164 LLEYDLCNRVSDVLFSPSWGQL--DATELAEWILADRLPVRFQMQLHKLL 211


>gi|305663006|ref|YP_003859294.1| coenzyme PQQ synthesis protein, conjectural [Ignisphaera aggregans
           DSM 17230]
 gi|304377575|gb|ADM27414.1| coenzyme PQQ synthesis protein, conjectural [Ignisphaera aggregans
           DSM 17230]
          Length = 219

 Score =  164 bits (416), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 30/209 (14%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + EIF ++QGEG   GR AVF R  GCNL   +           CDT +     + G  
Sbjct: 7   RVSEIFYSIQGEGPFIGRPAVFIRLQGCNLRCTKNSVGWD-----CDTQYAW-DSSGGME 60

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
            ++D++ D++ +       + R+ V+TGGEP++Q    + LI+ L   G+ I +ETNGTI
Sbjct: 61  ISIDRVVDIVRQ------YQCRHIVITGGEPMIQQREVIELIKRL--DGYAIEIETNGTI 112

Query: 123 EPPQGIDW----ICVSPKAGCDLK---IKGGQELKLVF--PQVNVSPENYIGF---DFER 170
                       + VSPK    ++   I+    LK V    +  V  ++++     +  R
Sbjct: 113 PLDPDFPVEKVRLNVSPKPHAPIRPEYIRYASCLKFVVASEKDLVFVDSFVKIYGVEPSR 172

Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPKWR 199
             L P      E N N  I  C++  K R
Sbjct: 173 IWLMPASRNVDEHNRN--IRLCWEYAKLR 199


>gi|331016448|gb|EGH96504.1| radical SAM domain protein [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 215

 Score =  164 bits (415), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 100/232 (43%), Gaps = 51/232 (21%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT 
Sbjct: 3   ETLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT- 50

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
                +  L D+I +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G
Sbjct: 51  -----IQTLDDIIGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG 102

Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQ-VNVSPENYIGF-----DFERF 171
            ++         V P+     DLK  G +E+ +  +     ++P + + F     +   +
Sbjct: 103 ALDISA------VDPRVSRVVDLKTPGSKEVARNRYENMALLTPNDQVKFVICSREDYDW 156

Query: 172 SLQPMDGPFLEENT---------------NLAISYCFQNPKWRLSVQTHKFI 208
           ++  +    L+                  +LA      N   RL +Q HK +
Sbjct: 157 AVSKLIQYGLDRRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208


>gi|254490155|ref|ZP_05103346.1| radical SAM domain protein, putative [Methylophaga thiooxidans
           DMS010]
 gi|224464641|gb|EEF80899.1| radical SAM domain protein, putative [Methylophaga thiooxydans
           DMS010]
          Length = 213

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 95/234 (40%), Gaps = 54/234 (23%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    I EIF +LQGE    G   VF R +GC L           +C +CDT++    G 
Sbjct: 1   MAQCRITEIFYSLQGESRTVGLPTVFVRLTGCPL-----------RCGYCDTEYAFYGGQ 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119
           K        ++D++E+       + RY  +TGGEPL Q + +PL+ AL   G E+++ET+
Sbjct: 50  K------MDISDIVEQ---VAAYKPRYVCVTGGEPLAQPNCIPLLTALCDLGVEVSIETS 100

Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLV------FP 154
           G ++  +      V P+     DLK  G  E                 LK V      + 
Sbjct: 101 GAMDISK------VDPRVIRVMDLKTPGSGEESKNRYENIALLESKDQLKFVICHREDYD 154

Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
               +   Y   D       P+ G     +  LA      N   R+ +Q HK++
Sbjct: 155 WACETLAEYQLSDRCEVLFSPIHGELKPAD--LADWIVEDNLPVRMQLQLHKYL 206


>gi|119477238|ref|ZP_01617474.1| probable radical activating enzyme [marine gamma proteobacterium
           HTCC2143]
 gi|119449601|gb|EAW30839.1| probable radical activating enzyme [marine gamma proteobacterium
           HTCC2143]
          Length = 214

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 100/233 (42%), Gaps = 51/233 (21%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    + EIF +LQGE    G   VF R +GC L           +C +CDT++      
Sbjct: 1   MTDLRLTEIFYSLQGETRTVGLPTVFVRLTGCPL-----------RCAYCDTEYAFH--- 46

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
            G ++++  + + +           RY  +TGGEPL Q +  PL+ AL  +G+E+++ET+
Sbjct: 47  GGEKWSLQAIQEKV------ASYHPRYVTVTGGEPLAQPNCWPLLTALCDQGYEVSLETS 100

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF--------DFE 169
           G I    G+D   V      DLK     E+ + ++  +  +SP++ I F        ++ 
Sbjct: 101 GAISLL-GVDSRVV---KVMDLKTPASNEMSRNLYENIELLSPQDQIKFVICDRKDYEWA 156

Query: 170 RFSL--------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           RF L               P  G    E+  LA      N   R  VQ HK +
Sbjct: 157 RFKLDEHRLVDRVDEVLFSPSFGQI--ESAELAEWILADNLPVRFQVQLHKLL 207


>gi|237800229|ref|ZP_04588690.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|237806417|ref|ZP_04593121.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023086|gb|EGI03143.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027530|gb|EGI07585.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 215

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/231 (25%), Positives = 100/231 (43%), Gaps = 51/231 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G 
Sbjct: 51  ----IQTLDDIVGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNV-SPENYIGF-----DFERFS 172
           ++         V P+     DLK  G +E+ +  +  + + +P + + F     +   ++
Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEVSRNRYENMELLTPNDQVKFVICSREDYDWA 157

Query: 173 LQPMDGPFLEENT---------------NLAISYCFQNPKWRLSVQTHKFI 208
           +  +    LE                  +LA      N   RL +Q HK +
Sbjct: 158 VSKLIQYGLERRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208


>gi|116048900|ref|YP_792299.1| radical activating enzyme [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584121|gb|ABJ10136.1| probable radical activating enzyme [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 264

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 51/232 (21%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   I EIF +LQGE   AG   VF R +GC L           +C +CDT +     + 
Sbjct: 52  QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 97

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           G   ++D + + +         + RY  +TGGEPL Q + + L++ L   G+E+++ET+G
Sbjct: 98  GDVVSLDAILERV------ATYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 151

Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNVSPENY---------IGFDF 168
            ++  +      V P+     DLK  G  E+ +  +  + +  +N            +D+
Sbjct: 152 ALDVSR------VDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDW 205

Query: 169 ERFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208
               L    +D    E              LA      N   RL +Q HK +
Sbjct: 206 AVSKLIEYRLDQRAGEVLFSPSHHQVSARELADWIVADNLPVRLQLQLHKIL 257


>gi|28871114|ref|NP_793733.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28854364|gb|AAO57428.1| radical SAM domain protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 215

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 51/232 (21%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT 
Sbjct: 3   ETLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT- 50

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
                +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G
Sbjct: 51  -----IQTLDDIVGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG 102

Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQ-VNVSPENYIGF-----DFERF 171
            ++         V P+     DLK  G +E+ +  +     ++P + + F     +   +
Sbjct: 103 ALDISA------VDPRVSRVVDLKTPGSKEVARNRYENMALLTPNDQVKFVICSREDYDW 156

Query: 172 SLQPMDGPFLEENT---------------NLAISYCFQNPKWRLSVQTHKFI 208
           ++  +    L+                  +LA      N   RL +Q HK +
Sbjct: 157 AVSKLIQYGLDRRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208


>gi|70732080|ref|YP_261836.1| radical activating enzyme [Pseudomonas fluorescens Pf-5]
 gi|68346379|gb|AAY93985.1| radical activating enzyme [Pseudomonas fluorescens Pf-5]
          Length = 215

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 98/231 (42%), Gaps = 51/231 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I E+F +LQGE   AG   VF R +GC L           +C++CD+ +     + G
Sbjct: 4   TLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAF---SGG 49

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
            +  +D L + +           RY  +TGGEPL Q + +PL+Q L   G+E+++ET+G 
Sbjct: 50  SQRTLDSLLEQV------AGFRPRYVCVTGGEPLAQPNAIPLLQHLCDAGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLVF---PQVNVS 159
           ++         V P+     DLK  G +E                 +K V       + +
Sbjct: 104 LDISA------VDPRVSRILDLKTPGSKEAHRNRYENIELLTANDQVKFVICSREDYDWA 157

Query: 160 PENYIGFDFERFSLQPMDGPFLEE--NTNLAISYCFQNPKWRLSVQTHKFI 208
               I +  ER + + +  P   +    +LA      N   RL +Q HK++
Sbjct: 158 VSKLIQYGLERRAGEVLFSPSHHDLNARDLADWIVADNLPVRLQLQLHKYL 208


>gi|213969194|ref|ZP_03397333.1| radical SAM domain protein [Pseudomonas syringae pv. tomato T1]
 gi|301384811|ref|ZP_07233229.1| radical SAM domain protein [Pseudomonas syringae pv. tomato Max13]
 gi|302063535|ref|ZP_07255076.1| radical SAM domain protein [Pseudomonas syringae pv. tomato K40]
 gi|302130601|ref|ZP_07256591.1| radical SAM domain protein [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213926192|gb|EEB59748.1| radical SAM domain protein [Pseudomonas syringae pv. tomato T1]
          Length = 215

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 51/232 (21%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT 
Sbjct: 3   ETLRITEIFHSLQGETRTAGLPTVFIRLTGCPL-----------RCQYCDSAYAFSGGT- 50

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
                +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G
Sbjct: 51  -----IQTLDDIVGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG 102

Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQ-VNVSPENYIGF-----DFERF 171
            ++         V P+     DLK  G +E+ +  +     ++P + + F     +   +
Sbjct: 103 ALDISA------VDPRVSRVVDLKTPGSKEVARNRYENMALLTPNDQVKFVICSREDYDW 156

Query: 172 SLQPMDGPFLEENT---------------NLAISYCFQNPKWRLSVQTHKFI 208
           ++  +    L+                  +LA      N   RL +Q HK +
Sbjct: 157 AVSKLIQYGLDRRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208


>gi|88810549|ref|ZP_01125806.1| Radical SAM domain protein [Nitrococcus mobilis Nb-231]
 gi|88792179|gb|EAR23289.1| Radical SAM domain protein [Nitrococcus mobilis Nb-231]
          Length = 225

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 52/230 (22%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + EIF +LQGE G  G   VF R +GC L           +C +CDT +       G 
Sbjct: 16  LRVTEIFYSLQGEAGTVGAPTVFVRLTGCPL-----------RCHYCDTAYAFH---GGE 61

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           + ++ ++ D +      GE   ++  +TGGEPL Q   + L+ +L  RG+ +++ET+G +
Sbjct: 62  KMSIIRILDRV------GEHAAKFVTVTGGEPLAQRGCLTLLSSLCDRGYRVSLETSGAL 115

Query: 123 EPPQGIDWICVSPKAG--CDLKIKG-GQELKLVFPQVN-VSPENYIGFDF---------- 168
           +         V P+     DLK  G G+E +  +  +N + P + + F            
Sbjct: 116 DVQA------VDPRVIKVMDLKTPGSGEERRNRWENLNYLRPHDELKFVICNRQDYDWAR 169

Query: 169 ---------ERFSLQPMDGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFI 208
                    ER+++      + E ++ L   +    +   RL +Q HK++
Sbjct: 170 TKVSELKLGERWTV-FFSASYGELSSRLLADWILADHLNVRLQIQLHKYL 218


>gi|307352768|ref|YP_003893819.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
           DSM 11571]
 gi|307156001|gb|ADN35381.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 204

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 48/228 (21%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + EIF ++QGEG + G  + F R SGCNL           +CR+CDT      G+    
Sbjct: 2   KVFEIFPSIQGEGPYQGIPSAFIRLSGCNL-----------RCRWCDTPKTQ-DGSSSEE 49

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
             VD++   +++  ++      +  +TGGEPL+Q D  + L++ L++ G+ + +ETNGTI
Sbjct: 50  MTVDEVFGQVKKLGLS------HVCITGGEPLIQQDELLSLLKDLHEDGYIVEIETNGTI 103

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE------------- 169
           +P   +++  V      D+K     E         + P + + F  E             
Sbjct: 104 DPVPVMEYSSV----CMDIKCPSSGEKSFAPFVKKLRPSDCVKFVVEGKEDLEYMTGLLD 159

Query: 170 ------RFSLQPMDGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFIGI 210
                    + P+ G            Y  +     R  +Q HK +G+
Sbjct: 160 DIPSYVEVCVSPVWGSDS----RFIADYIMKLKRPVRFQLQLHKILGV 203


>gi|327481488|gb|AEA84798.1| radical activating enzyme [Pseudomonas stutzeri DSM 4166]
          Length = 224

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 88/232 (37%), Gaps = 51/232 (21%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
               I EIF +LQGE   +G   VF R +GC L           +C++CDT +     + 
Sbjct: 12  MTLRITEIFYSLQGETRTSGLPTVFVRLTGCPL-----------RCQYCDTAYAF---SG 57

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           G    +D + + +           RY  +TGGEPL Q + VPL+Q L   G+E+++ET+G
Sbjct: 58  GELMALDAILERVAA------YNPRYVCVTGGEPLAQPNCVPLLQRLCDAGYEVSLETSG 111

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQE-----------------LKLVFPQVN-----V 158
            ++     + +        DLK  G  E                 +K V          V
Sbjct: 112 ALDISPVDERVS----RVVDLKTPGSAEVGRNRYENIVHLTRNDQVKFVICSREDYDWAV 167

Query: 159 SPENYIGFDFE--RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           S     G D         P  G        LA      N   RL +Q HK I
Sbjct: 168 SKLIEYGLDRRAGEVLFSPSHGQVDVRA--LADWIVADNLPVRLQLQLHKII 217


>gi|330872644|gb|EGH06793.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330964833|gb|EGH65093.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 215

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 101/232 (43%), Gaps = 51/232 (21%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT 
Sbjct: 3   ETLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT- 50

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
                +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G
Sbjct: 51  -----IQTLDDIVGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSG 102

Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNV-SPENYIGF-----DFERF 171
            ++         V P+     DLK  G +E+ +  +  + + +P + + F     +   +
Sbjct: 103 ALDISA------VDPRVSRVVDLKTPGSKEVARNRYENMELLTPNDQVKFVICSREDYDW 156

Query: 172 SLQPMDGPFLEENT---------------NLAISYCFQNPKWRLSVQTHKFI 208
           ++  +    L+                  +LA      N   RL +Q HK +
Sbjct: 157 AVSKLIQYGLDRRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208


>gi|218893054|ref|YP_002441923.1| putative radical activating enzyme [Pseudomonas aeruginosa LESB58]
 gi|218773282|emb|CAW29094.1| probable radical activating enzyme [Pseudomonas aeruginosa LESB58]
          Length = 264

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 51/232 (21%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   I EIF +LQGE   AG   VF R +GC L           +C +CDT +     + 
Sbjct: 52  QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 97

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           G   ++D + + +         + RY  +TGGEPL Q + + L++ L   G+E+++ET+G
Sbjct: 98  GDVVSLDAIFERVAA------YKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 151

Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNVSPENY---------IGFDF 168
            ++  +      V P+     DLK  G  E+ +  +  + +  +N            +D+
Sbjct: 152 ALDVSR------VDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDW 205

Query: 169 ERFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208
               L    +D    E              LA      N   RL +Q HK +
Sbjct: 206 AVSKLIEYRLDQRAGEVLFSPSHHQVSARELADWIVADNLPVRLQLQLHKIL 257


>gi|49082982|gb|AAT50891.1| PA0975 [synthetic construct]
          Length = 265

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 51/232 (21%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   I EIF +LQGE   AG   VF R +GC L           +C +CDT +     + 
Sbjct: 52  QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 97

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           G   ++D + + +         + RY  +TGGEPL Q + + L++ L   G+E+++ET+G
Sbjct: 98  GDVVSLDAIFERVAA------YKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 151

Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNVSPENY---------IGFDF 168
            ++  +      V P+     DLK  G  E+ +  +  + +  +N            +D+
Sbjct: 152 ALDVSR------VDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDW 205

Query: 169 ERFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208
               L    +D    E              LA      N   RL +Q HK +
Sbjct: 206 AVSKLIEYRLDQRAGEVLFSPSHHQVSARELADWIVADNLPVRLQLQLHKIL 257


>gi|254239323|ref|ZP_04932646.1| hypothetical protein PACG_05520 [Pseudomonas aeruginosa C3719]
 gi|126171254|gb|EAZ56765.1| hypothetical protein PACG_05520 [Pseudomonas aeruginosa C3719]
          Length = 264

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 51/232 (21%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   I EIF +LQGE   AG   VF R +GC L           +C +CDT +     + 
Sbjct: 52  QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 97

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           G   ++D + + +         + RY  +TGGEPL Q + + L++ L   G+E+++ET+G
Sbjct: 98  GDVVSLDAIFERVAA------YKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 151

Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNVSPENY---------IGFDF 168
            ++  +      V P+     DLK  G  E+ +  +  + +  +N            +D+
Sbjct: 152 ALDVSR------VDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDW 205

Query: 169 ERFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208
               L    +D    E              LA      N   RL +Q HK +
Sbjct: 206 AVSKLIEYRLDQRAGEVLFSPSHHQVSARELADWIVADNLPVRLQLQLHKIL 257


>gi|15596172|ref|NP_249666.1| radical activating enzyme [Pseudomonas aeruginosa PAO1]
 gi|254245258|ref|ZP_04938580.1| hypothetical protein PA2G_06150 [Pseudomonas aeruginosa 2192]
 gi|9946883|gb|AAG04364.1|AE004531_1 probable radical activating enzyme [Pseudomonas aeruginosa PAO1]
 gi|126198636|gb|EAZ62699.1| hypothetical protein PA2G_06150 [Pseudomonas aeruginosa 2192]
          Length = 264

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 51/232 (21%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   I EIF +LQGE   AG   VF R +GC L           +C +CDT +     + 
Sbjct: 52  QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 97

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           G   ++D + + +         + RY  +TGGEPL Q + + L++ L   G+E+++ET+G
Sbjct: 98  GDVVSLDAIFERVAA------YKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 151

Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNVSPENY---------IGFDF 168
            ++  +      V P+     DLK  G  E+ +  +  + +  +N            +D+
Sbjct: 152 ALDVSR------VDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDW 205

Query: 169 ERFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208
               L    +D    E              LA      N   RL +Q HK +
Sbjct: 206 AVSKLIEYRLDQRAGEVLFSPSHHQVSARELADWIVADNLPVRLQLQLHKIL 257


>gi|146283135|ref|YP_001173288.1| radical activating enzyme [Pseudomonas stutzeri A1501]
 gi|145571340|gb|ABP80446.1| probable radical activating enzyme [Pseudomonas stutzeri A1501]
          Length = 213

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 91/232 (39%), Gaps = 51/232 (21%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
               I EIF +LQGE   +G   VF R +GC L           +C++CDT +     + 
Sbjct: 1   MTLRITEIFYSLQGETRTSGLPTVFVRLTGCPL-----------RCQYCDTAYAF---SG 46

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           G    +D + + +           RY  +TGGEPL Q + VPL+Q L   G+E+++ET+G
Sbjct: 47  GELMALDAILERVAA------YNPRYVCVTGGEPLAQPNCVPLLQRLCDAGYEVSLETSG 100

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQEL------KLVF----PQVNVSPENYIGFDFER 170
            ++     + +        DLK  G  E+       +V      QV     +   +D+  
Sbjct: 101 ALDISPVDERVS----RVVDLKTPGSAEVGRNRYENIVHLTRNDQVKFVICSREDYDWAV 156

Query: 171 FSL--------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
             L               P  G        LA      N   RL +Q HK I
Sbjct: 157 SKLIEYGLARRAGEVLFSPSHGQVDVRA--LADWIVADNLPVRLQLQLHKII 206


>gi|317505338|ref|ZP_07963266.1| GntS protein [Prevotella salivae DSM 15606]
 gi|315663552|gb|EFV03291.1| GntS protein [Prevotella salivae DSM 15606]
          Length = 141

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/147 (42%), Positives = 85/147 (57%), Gaps = 9/147 (6%)

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQG 127
             + D+I    I+  K+  + VLTGGEP LQVD  LI AL+  GF +A+E+NGT  PPQ 
Sbjct: 1   MTIDDIISA--ISKWKKAGFVVLTGGEPTLQVDDKLIDALHASGFYVAMESNGTRVPPQN 58

Query: 128 IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT-- 185
           +DW+ VSPK    + +    ELK +F   ++  +  I  D+  + LQP D     +N   
Sbjct: 59  LDWLTVSPKGS--VVVTKCNELKCIFDGESMVDDAGIQADY--YYLQPCDVGDKAKNQVI 114

Query: 186 -NLAISYCFQNPKWRLSVQTHKFIGIR 211
               ISY   +PKWRLS+QTHK IGI+
Sbjct: 115 LQACISYILSHPKWRLSLQTHKMIGIQ 141


>gi|126180149|ref|YP_001048114.1| radical SAM domain-containing protein [Methanoculleus marisnigri
           JR1]
 gi|125862943|gb|ABN58132.1| Radical SAM domain protein [Methanoculleus marisnigri JR1]
          Length = 202

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 95/227 (41%), Gaps = 48/227 (21%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF +LQGEG + GR   F R +GCNL           +C +CDT +       G   
Sbjct: 3   VSEIFRSLQGEGKNQGRPCTFIRLAGCNL-----------RCAWCDTPYAR---EGGEEM 48

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
           +V Q+ D +   W+     G +  +TGGEPLLQ    + L++  +  G+ + +ETNGT +
Sbjct: 49  SVTQVLDRV---WLL---RGTHICITGGEPLLQREDVLKLLEKFSLHGYTVEIETNGTCD 102

Query: 124 -------PPQGIDWICVSPKAGCDL------------KIKGGQELKLVFPQVNVSPENYI 164
                      +D  C S     DL            K     E  L++ +  +S     
Sbjct: 103 FRDMQPYASICMDVKCPSSGEKSDLSLLSFITPRDCVKFVVADEDDLLYARAVMSRCEIR 162

Query: 165 GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           G       + P++G       +  +    +N   R  +Q HK +G++
Sbjct: 163 G----EVFISPVEGSDYRAVADQIVE---ENLPVRFQLQLHKILGVK 202


>gi|313105862|ref|ZP_07792125.1| putative radical activating enzyme [Pseudomonas aeruginosa 39016]
 gi|310878627|gb|EFQ37221.1| putative radical activating enzyme [Pseudomonas aeruginosa 39016]
          Length = 215

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 51/232 (21%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   I EIF +LQGE   AG   VF R +GC L           +C +CDT +     + 
Sbjct: 3   QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 48

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           G   ++D + + +         + RY  +TGGEPL Q + + L++ L   G+E+++ET+G
Sbjct: 49  GDVVSLDAILERV------ATYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 102

Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNVSPENY---------IGFDF 168
            ++  +      V P+     DLK  G  E+ +  +  + +  +N            +D+
Sbjct: 103 ALDVSR------VDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDW 156

Query: 169 ERFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208
               L    +D    E              LA      N   RL +Q HK +
Sbjct: 157 AVSKLIEYRLDQRAGEVLFSPSHYQVSARELADWIVADNLPVRLQLQLHKIL 208


>gi|77163686|ref|YP_342211.1| radical SAM domain-containing protein [Nitrosococcus oceani ATCC
           19707]
 gi|254436167|ref|ZP_05049674.1| radical SAM domain protein, putative [Nitrosococcus oceani AFC27]
 gi|76882000|gb|ABA56681.1| Radical SAM domain protein [Nitrosococcus oceani ATCC 19707]
 gi|207089278|gb|EDZ66550.1| radical SAM domain protein, putative [Nitrosococcus oceani AFC27]
          Length = 213

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 94/232 (40%), Gaps = 50/232 (21%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK   I EIF +LQGE    G    F R +GC L           +C +CDT++      
Sbjct: 1   MKRLRITEIFYSLQGEARSVGWPTAFVRLTGCPL-----------RCHYCDTEYAF---Q 46

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETN 119
            G    +D + D + E  +      R+  +TGGEPL Q   + L+  L   G+E+++ET+
Sbjct: 47  GGRWMALDGILDAVAEFGV------RHVTVTGGEPLAQSACLGLLTRLCDAGYEVSLETS 100

Query: 120 GTIEPPQ-------GIDWICVSPKAGCDLK--------IKGGQELKLVFPQVNVSPENYI 164
           G ++           +DW    P +G + +        +    ++KLV    N    ++ 
Sbjct: 101 GALDISAVDRRVIKVMDWKT--PGSGEEARNLSTNLEHLSSQDQVKLVLC--NRHDYDWA 156

Query: 165 GFDFERFSL--------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
               ER  L         P         T+LA      +   R+ +Q HK++
Sbjct: 157 KGVLERHRLTEYCEVLFSPSYEQLSP--TDLADWILADHLPVRMQIQLHKYL 206


>gi|296390666|ref|ZP_06880141.1| radical activating enzyme [Pseudomonas aeruginosa PAb1]
          Length = 215

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 51/232 (21%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   I EIF +LQGE   AG   VF R +GC L           +C +CDT +     + 
Sbjct: 3   QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 48

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           G   ++D + + +         + RY  +TGGEPL Q + + L++ L   G+E+++ET+G
Sbjct: 49  GDVVSLDAILERV------ATYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 102

Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNVSPENY---------IGFDF 168
            ++  +      V P+     DLK  G  E+ +  +  + +  +N            +D+
Sbjct: 103 ALDVSR------VDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDW 156

Query: 169 ERFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208
               L    +D    E              LA      N   RL +Q HK +
Sbjct: 157 AVSKLIEYRLDQRAGEVLFSPSHHQVSARELADWIVADNLPVRLQLQLHKIL 208


>gi|317054935|ref|YP_004103402.1| Radical SAM domain-containing protein [Ruminococcus albus 7]
 gi|315447204|gb|ADU20768.1| Radical SAM domain protein [Ruminococcus albus 7]
          Length = 224

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 100/232 (43%), Gaps = 40/232 (17%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    + E F+++ GEG +AG +A+F RF+GCNL           QC +CDT +      
Sbjct: 1   MGTLKLAENFVSINGEGRYAGELALFMRFAGCNL-----------QCDWCDTKWANGADA 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
                   QLA++ E+             LTGGEPLLQ D+  LI ALN RG ++ +ETN
Sbjct: 50  PFTEKTAVQLAEIAEDA--ADGYGLHRVTLTGGEPLLQKDIAELINALNDRGLDVEIETN 107

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIK-GGQELKLVFPQVNVSPENYI-------GFDFER- 170
           G++      +   V P    D K+   G E ++    ++   E+           D +R 
Sbjct: 108 GSVPIAPVAEICRVRPVFTMDYKLPSSGMESRMCIENLSQLKESDTLKFVCASKEDLKRA 167

Query: 171 ------------FSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
                         L P+ G    ++    + +  +    K RL +Q HKFI
Sbjct: 168 VWVLDTYEPVCMVYLSPVFGRIEPKDM---VEFMKEKKLGKVRLQLQLHKFI 216


>gi|330502228|ref|YP_004379097.1| radical SAM domain-containing protein [Pseudomonas mendocina NK-01]
 gi|328916514|gb|AEB57345.1| radical SAM domain-containing protein [Pseudomonas mendocina NK-01]
          Length = 226

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 89/234 (38%), Gaps = 55/234 (23%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   I EIF +LQGE   AG   VF R +GC L           +C++CDT +     + 
Sbjct: 14  ETLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDTAYAF---SG 59

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           G    +D++ D +            Y  +TGGEPL Q + + L+  L   G+E+++ET+G
Sbjct: 60  GEIVTLDRILDQVAA------YRPHYVCVTGGEPLAQPNCISLLTRLCDAGYEVSLETSG 113

Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLVFP------- 154
            +      D   V P+     DLK  G  E                 +K V         
Sbjct: 114 AL------DVAAVDPRVSKVLDLKTPGSAEVQRNRYENIQWLTRNDQVKFVICSREDYDW 167

Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
            ++   E+ +          P       E   LA      N   RL +Q HK +
Sbjct: 168 AISKLIEHDLAARAGEVLFSP--SHTQVEARALAEWIIADNLPVRLQLQLHKIL 219


>gi|71735883|ref|YP_275904.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257487001|ref|ZP_05641042.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|298488200|ref|ZP_07006236.1| Queuosine Biosynthesis QueE Radical SAM [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71556436|gb|AAZ35647.1| radical SAM domain protein [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|298157258|gb|EFH98342.1| Queuosine Biosynthesis QueE Radical SAM [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320323043|gb|EFW79132.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329685|gb|EFW85674.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330877970|gb|EGH12119.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330892249|gb|EGH24910.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330988978|gb|EGH87081.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009357|gb|EGH89413.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 215

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 51/231 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G 
Sbjct: 51  ----IQTLDDIVGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNV-SPENYIGF-----DFERFS 172
           ++         V P+     DLK  G +E+ +  +  + + +  + + F     +   ++
Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEVSRNRYENIELLTRNDQVKFVICSREDYDWA 157

Query: 173 LQPMDGPFLEENT---------------NLAISYCFQNPKWRLSVQTHKFI 208
           +  +    LE                  +LA      N   RL +Q HK +
Sbjct: 158 VSKLIQYGLERRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208


>gi|254516700|ref|ZP_05128759.1| radical SAM domain protein [gamma proteobacterium NOR5-3]
 gi|219675123|gb|EED31490.1| radical SAM domain protein [gamma proteobacterium NOR5-3]
          Length = 226

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 90/234 (38%), Gaps = 55/234 (23%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   I EIF +LQGE    G   VF R +GC L           +C +CDT++       
Sbjct: 14  QTLRITEIFYSLQGEARTVGLPTVFVRLTGCPL-----------RCLYCDTEYAFH---G 59

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           G     + +A  + +          Y  +TGGEPL Q + +PL+  L  +G+E+++ET+G
Sbjct: 60  GEIMTFEHIAGQVAQHAPA------YVTVTGGEPLAQPNCLPLLSLLCDQGYEVSLETSG 113

Query: 121 TIEPPQGIDWICVSPKA--GCDLKIKGGQE-----------------LKLVFPQVNVSPE 161
            +          V P+     DLK     E                 LK V    + +  
Sbjct: 114 AMPVAD------VDPRVVKVLDLKTPASGEAGRNDYANIEHLTSNDQLKFVIC--DRNDY 165

Query: 162 NYIGFDFERFSLQPM--DGPFLEENTNLA----ISYCFQ-NPKWRLSVQTHKFI 208
            +  F  +  +L P   D  F   +  LA      +        RL +Q HK +
Sbjct: 166 EWARFKLDELALVPRVSDVLFSPSHEQLAPRELAEWILADRLPVRLQLQLHKLL 219


>gi|289581999|ref|YP_003480465.1| radical SAM protein [Natrialba magadii ATCC 43099]
 gi|289531552|gb|ADD05903.1| Radical SAM domain protein [Natrialba magadii ATCC 43099]
          Length = 280

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 54/145 (37%), Positives = 70/145 (48%), Gaps = 19/145 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I E+F +LQGEG  AG  +VF R SGCNL           +C FCD+     + T   
Sbjct: 24  LPINELFYSLQGEGVLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPTH-A 71

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
              +D + D IE        +  + VLTGGEPLL    V L++AL++RG+   VETNGTI
Sbjct: 72  WMELDAILDEIESH------DADHVVLTGGEPLLHDASVALLEALDERGYHTTVETNGTI 125

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQ 147
                ID   +SPK           
Sbjct: 126 YRDAPIDLASISPKLASSTPTPERD 150


>gi|119896705|ref|YP_931918.1| putative radical activating enzyme [Azoarcus sp. BH72]
 gi|119669118|emb|CAL93031.1| conserved hypothetical radical activating enzyme [Azoarcus sp.
           BH72]
          Length = 220

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 85/231 (36%), Gaps = 54/231 (23%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + EIF ++QGE    G    F R +GC L           +C +CDT +    G    
Sbjct: 11  LRLTEIFASIQGESTRVGLPTTFVRLTGCPL-----------RCSWCDTAYAFTGGE--- 56

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
                 L+D++++    G    R+  +TGGEPL Q   + L+ AL   G+ +++ET+G +
Sbjct: 57  ---ARALSDVLDDVAALGL---RHVCVTGGEPLAQKYCLALLTALCDAGYSVSLETSGAL 110

Query: 123 EPPQGIDWICVSPKAG--CDLKIKGG-----------------QELKLV------FPQVN 157
           +         V P+     DLK  G                   ELK+V      +    
Sbjct: 111 DIGG------VDPRVSRVMDLKAPGSAEVTRNRLENIPLLRARDELKIVLADQADYDWAR 164

Query: 158 VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
               ++         L P+ G        LA          R  +Q HK +
Sbjct: 165 AMIADHDLAARCPVLLSPVAGTLDPA--QLAEWIVRDRLPVRFQLQLHKIL 213


>gi|329893688|ref|ZP_08269822.1| Queuosine Biosynthesis QueE Radical SAM [gamma proteobacterium
           IMCC3088]
 gi|328923615|gb|EGG30927.1| Queuosine Biosynthesis QueE Radical SAM [gamma proteobacterium
           IMCC3088]
          Length = 230

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 93/232 (40%), Gaps = 51/232 (21%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   I EIF +LQGE    G   VF R +GC L           +C +CDT++    GT+
Sbjct: 18  QTLRISEIFYSLQGETRTLGLPTVFIRLTGCPL-----------RCVYCDTEYAFHGGTQ 66

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
                   L D++E+         R+  +TGGEPL Q +  PL+Q L   G+E+++ET+G
Sbjct: 67  ------IALGDILEQ---AAAFNTRFVTVTGGEPLAQPNCWPLLQMLCDEGYEVSLETSG 117

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQE----------LKLVFPQVNVSPENYIGFDFER 170
            +     +D   V      DLK  G  E          L  +  QV     +   +D+ R
Sbjct: 118 ALSV-ADVDARVV---KVLDLKTPGSGESHRNDYENIALLNLHDQVKFVITDREDYDWAR 173

Query: 171 FSL--------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           F +               P+ G      T LA          R  +Q HK +
Sbjct: 174 FKVDELGLVGRVSDILFSPVHGKLTP--TQLADWILADRLPVRFQLQLHKLL 223


>gi|55378864|ref|YP_136714.1| hypothetical protein rrnAC2164 [Haloarcula marismortui ATCC 43049]
 gi|55231589|gb|AAV47008.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 260

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 67/138 (48%), Gaps = 19/138 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I E+F +LQGEG  AG  +VF R SGCNL           +C FCD+     + T   
Sbjct: 24  LPINELFQSLQGEGRLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPTHD- 71

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + VD +   IEE       +  + VLTGGEPL+      L+  L  RG+   VETNGT+
Sbjct: 72  WFTVDDVLAAIEE------YDANHVVLTGGEPLIHDSSEDLLARLTDRGYHTTVETNGTV 125

Query: 123 EPPQGIDWICVSPKAGCD 140
            P   ID   VSPK    
Sbjct: 126 VPDAPIDLASVSPKLASS 143


>gi|119493534|ref|ZP_01624200.1| hypothetical protein L8106_18202 [Lyngbya sp. PCC 8106]
 gi|119452651|gb|EAW33832.1| hypothetical protein L8106_18202 [Lyngbya sp. PCC 8106]
          Length = 204

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 94/223 (42%), Gaps = 33/223 (14%)

Query: 1   MKLYSIKEIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M   +I E F  T+QGEG  AG    F R +GC +           QC +CDT +    G
Sbjct: 1   MNEIAIHETFQNTIQGEGFWAGTPVDFIRLAGCPV-----------QCHYCDTGYAN--G 47

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
            +G   NV     LI E            V++GGEP +   +P L++ +      + +ET
Sbjct: 48  GEGLPRNVRSFEALIAEL------RSPKVVISGGEPFIYPQLPDLVKCIEATNRTVFIET 101

Query: 119 NGTIEPP-QGIDWICVSPKAG-------CDLKIKGGQELKLVFPQVNVSP--ENYIGFDF 168
           +G    P     WI +SPK          D   +   E+KLV    +     + Y+    
Sbjct: 102 SGCFWQPISSSVWITLSPKEHLNPHYPVVDQMWERASEIKLVIETGSELKYYDQYLSLKP 161

Query: 169 ER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    LQP +    +    L +    Q P +RLS+Q HK++G+
Sbjct: 162 QIPVFLQP-EWTQRDYTLPLVLELLQQYPDYRLSLQLHKYVGV 203


>gi|193215257|ref|YP_001996456.1| radical SAM domain-containing protein [Chloroherpeton thalassium
           ATCC 35110]
 gi|193088734|gb|ACF14009.1| Radical SAM domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 219

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 58/233 (24%), Positives = 94/233 (40%), Gaps = 49/233 (21%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + EIF ++QGE   AG   VF R SGC+L           +C +CDT +       G
Sbjct: 1   MLKVNEIFHSIQGESSKAGWPCVFIRLSGCDL-----------RCSYCDTGYAFFD---G 46

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
             ++ +++ + +         + R   +TGGEPLLQ +V PL+ AL + G+E+ +ET G 
Sbjct: 47  KEFSQEEILEQV------AFYKTRLVEITGGEPLLQPNVYPLMTALCEAGYEVLLETGGH 100

Query: 122 IEPPQG-------IDWICVSP-------KAGCDLKIKGGQ------ELKLVFPQVNVSPE 161
            +  +        ID    S            +L I   +      E K+V         
Sbjct: 101 HDVEKVDPRVYKIIDIKTPSSEMSEWNCYRNLELSIAEAKSGVLKTEFKIVLSSEG--DY 158

Query: 162 NYIGFDFERFSL---QPM--DGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFI 208
            +     ER+ L    P+     F   +      +    +   RL +Q HK+I
Sbjct: 159 RWAKNLIERYDLARFVPVIFSAAFGALHPRQIAEWILADHLPVRLQLQLHKYI 211


>gi|254674031|emb|CBA09815.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
          Length = 208

 Score =  161 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 84/205 (40%), Gaps = 36/205 (17%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           G  AVF R   CNL            C +CDTD++         + +  L+D++      
Sbjct: 26  GMPAVFVRLGKCNL-----------ACGWCDTDYLT--------FGMMSLSDIL---GCL 63

Query: 81  GEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139
                R  ++TGGEP +Q  +  L+  L   G+ + +ETNG    P  ID++  SPKA  
Sbjct: 64  KTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLNPAPPQIDYVATSPKACY 123

Query: 140 DLKIKG-----GQELKLVFPQVNVSPEN--YIGFDFERFSLQPM--DGPFLEENTNLAIS 190
             K +        E+++V     ++             + L P   DG     +T   I 
Sbjct: 124 AAKYENSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSPCEQDGAMNIYDTIRQIG 183

Query: 191 YCFQNP----KWRLSVQTHKFIGIR 211
                P     W+LSVQTHK+ GI 
Sbjct: 184 ILNSRPDASVHWQLSVQTHKWAGIE 208


>gi|113474000|ref|YP_720061.1| hypothetical protein Tery_0080 [Trichodesmium erythraeum IMS101]
 gi|110165048|gb|ABG49588.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
          Length = 207

 Score =  161 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 90/221 (40%), Gaps = 33/221 (14%)

Query: 4   YSIKEIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             I E F  T+QGEG  AG    F R +GC +            C +CDT +    G   
Sbjct: 7   IPIHETFQKTIQGEGYWAGTPVDFIRLAGCPV-----------GCHYCDTGYA--DGGIS 53

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
               +  L  LI E +          V++GGEP +   +P LI  +   G ++++ET+G 
Sbjct: 54  LPRQIQTLDKLINELF------SPRVVISGGEPFIHKQLPALINRIEATGRQVSIETSGC 107

Query: 122 IEPPQGID-WICVSPKAGCDLKIK-------GGQELKLVFP---QVNVSPENYIGFDFER 170
                  + W+ +SPK     K            E+KLV     ++    +  +  +   
Sbjct: 108 YWQNISPNAWVTLSPKEHISHKYPIVPSMWTRASEIKLVIETGKELEFYSKILLLKNQTP 167

Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             LQP +    +    L      + P  RLS+Q HK++GI+
Sbjct: 168 VFLQP-EWYNRDFTLPLVQKLLQEYPHCRLSIQLHKYLGIK 207


>gi|282895310|ref|ZP_06303512.1| hypothetical protein CRD_00006 [Raphidiopsis brookii D9]
 gi|281199616|gb|EFA74476.1| hypothetical protein CRD_00006 [Raphidiopsis brookii D9]
          Length = 208

 Score =  161 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 33/221 (14%)

Query: 4   YSIKEIFLT-LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             I E F + +QGEG   G +  F R SGC L            C +CDT +    G   
Sbjct: 8   LPIHETFQSTVQGEGYWTGSLVDFIRLSGCPL-----------GCPWCDTGYA-DGGANL 55

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
            R+    + +L+ E            V++GGEP +   +P L+QAL   G ++++ET+G+
Sbjct: 56  PRFE-RTIGELLAEIK------SPRIVISGGEPFIHKHLPELVQALLGAGKQVSIETSGS 108

Query: 122 IEPPQGID-WICVSPKAGCDLKIK-------GGQELKLVFP---QVNVSPENYIGFDFER 170
                 +  WI +SPK   + K            E K+V     +++   E         
Sbjct: 109 FWKEVSLSAWITLSPKEHINPKYPVQNQFWSRANEAKIVIETGQEIDFYQEYLSARPDLY 168

Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             LQP +     ++  L +    Q P ++LS+QTHK+IG++
Sbjct: 169 VYLQP-EWNSSSKSLALILQLLQQKPDYKLSLQTHKYIGLQ 208


>gi|289626505|ref|ZP_06459459.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289650951|ref|ZP_06482294.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868621|gb|EGH03330.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 215

 Score =  161 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 51/231 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G 
Sbjct: 51  ----IHTLDDIVGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNV-SPENYIGF-----DFERFS 172
           ++         V P+     DLK  G +E+ +  +  + + +  + + F     +   ++
Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEVSRNRYENIELLTRNDQVKFVICSREDYDWA 157

Query: 173 LQPMDGPFLEENT---------------NLAISYCFQNPKWRLSVQTHKFI 208
           +  +    LE                  +LA      N   RL +Q HK +
Sbjct: 158 VSKLIQYGLERRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208


>gi|330975318|gb|EGH75384.1| radical SAM family protein [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 215

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 51/231 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G 
Sbjct: 51  ----IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGG----------QELKLVFPQVNVSPENYIGFDFE 169
           ++         V P+     DLK  G            EL     QV     +   +D+ 
Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWA 157

Query: 170 RFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208
              L    +D    E          +  +LA      N   RL +Q HK +
Sbjct: 158 VSKLIQYGLDRRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208


>gi|217969210|ref|YP_002354444.1| radical SAM protein [Thauera sp. MZ1T]
 gi|217506537|gb|ACK53548.1| Radical SAM domain protein [Thauera sp. MZ1T]
          Length = 223

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 83/231 (35%), Gaps = 54/231 (23%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE    G   VF R +GC L           +C +CDT +     + G 
Sbjct: 14  LRITEIFASLQGESTRVGLPTVFVRLTGCPL-----------RCTWCDTAYAF---SGGE 59

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
              +D +   +    +      R+  +TGGEPL Q   +PL+ AL   G ++++ET+G +
Sbjct: 60  TRTLDDILAEVASHGL------RHVCVTGGEPLAQKGCLPLLAALCDAGHDVSLETSGAL 113

Query: 123 EPPQGIDWICVSPKAG--CDLKIKGG-----------------QELKLVFPQVNVSPENY 163
           +         V P+     DLK  G                   ELK V           
Sbjct: 114 DIAG------VDPRVSRIVDLKAPGSGELARNRWENLALLCAHDELKFVLADAADYAWAR 167

Query: 164 IGFDFERFS------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                 R +      L P+ G        LA          R  +Q HK +
Sbjct: 168 QQIAEHRLAERCGVLLSPVAGALDPA--ELAGWIVRDRLPVRFQLQLHKIL 216


>gi|254427312|ref|ZP_05041019.1| radical SAM domain protein [Alcanivorax sp. DG881]
 gi|196193481|gb|EDX88440.1| radical SAM domain protein [Alcanivorax sp. DG881]
          Length = 213

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 91/231 (39%), Gaps = 53/231 (22%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + EIF +LQGE    GR  VF R +GC             +C +CDT++     + G 
Sbjct: 3   LRLTEIFHSLQGESRTVGRPTVFVRLTGCP-----------QRCVWCDTEYAF---SGGE 48

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           ++ +  + + +           +Y  +TGGEPL Q + +PL+ AL   G+++++ET G +
Sbjct: 49  KWTLAAIREQVAAHG------AQYVTVTGGEPLAQPNCLPLLTALCDDGYQVSLETGGAM 102

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQE----------LKLVFPQVNVSPENYIGFDFERFS 172
           +     + + V      DLK  G  E          L     QV     +   +D+ RF 
Sbjct: 103 DIAGVDERVSV----VMDLKAPGSGEQHNNRLENIPLLKAHHQVKFVLADRKDYDWARFM 158

Query: 173 LQPMDGPFLEENT---------------NLAISYCFQNPKWRLSVQTHKFI 208
           L   D   L +                  LA          R  +Q HK++
Sbjct: 159 L---DQHQLHKRVSDVLFSPVQDGLAPGELADWIVADRLPVRFQLQLHKYL 206


>gi|330936708|gb|EGH40896.1| radical SAM family protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 215

 Score =  160 bits (407), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 51/231 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G 
Sbjct: 51  ----IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGG----------QELKLVFPQVNVSPENYIGFDFE 169
           ++         V P+     DLK  G            EL     QV     +   +D+ 
Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWA 157

Query: 170 RFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208
              L    +D    E          +  +LA      N   RL +Q HK +
Sbjct: 158 VSKLIQYGLDRRVGEVLFSASHHELKGHDLADWIVADNLPVRLQMQLHKIL 208


>gi|110833622|ref|YP_692481.1| radical activating enzyme [Alcanivorax borkumensis SK2]
 gi|110646733|emb|CAL16209.1| radical activating enzyme [Alcanivorax borkumensis SK2]
          Length = 213

 Score =  160 bits (407), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 91/230 (39%), Gaps = 51/230 (22%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + EIF +LQGE    GR  VF R +GC             +C +CDT++    G K  
Sbjct: 3   LRLTEIFHSLQGESRTVGRPTVFVRLTGCP-----------QRCVWCDTEYAFSGGEKW- 50

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
                 LA ++EE    G    +Y  +TGGEPL Q   +PL++ L   G+++++ET G +
Sbjct: 51  -----SLAAILEEVAALG---AQYVTVTGGEPLAQPSCLPLLKTLCDEGYQVSLETGGAM 102

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQE----------LKLVFPQVNVSPENYIGFDFERFS 172
           +     + + V      DLK  G  E          L     QV     +   +D+ RF 
Sbjct: 103 DIAGVDERVSV----VMDLKAPGSGEQHNNRLSNIALLKAHHQVKFVLADRKDYDWARFM 158

Query: 173 L--------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           L               P+ G     +  LA          R  +Q HK +
Sbjct: 159 LDQYQLHQRVSDVLFSPVQGTLAPGD--LANWIVEDRLPVRFQLQLHKLL 206


>gi|104783064|ref|YP_609562.1| radical activating enzyme [Pseudomonas entomophila L48]
 gi|95112051|emb|CAK16778.1| putative radical activating enzyme [Pseudomonas entomophila L48]
          Length = 215

 Score =  160 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 94/229 (41%), Gaps = 47/229 (20%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I E+F +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGTVR 52

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               +D + + +         + RY  +TGGEPL Q + +PL+Q L   G+E+++ET+G 
Sbjct: 53  ---TLDSILEQV------AGFKPRYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQE-----------------LKLVF---PQVNVSPE 161
           ++       +        DLK  G +E                 +K V       + +  
Sbjct: 104 LDIAGTDTRVS----RVVDLKTPGSEESHRNRYENIELLTRNDQVKFVICSREDYDWAVS 159

Query: 162 NYIGFDFERFSLQPMDGPFLEE--NTNLAISYCFQNPKWRLSVQTHKFI 208
             I F+    + + +  P   +   T+LA      N   R  +Q HK +
Sbjct: 160 KLIQFNLAERAGEVLFSPSHHQVSATDLADWIVADNLPVRFQLQLHKLL 208


>gi|289548016|ref|YP_003473004.1| radical SAM protein [Thermocrinis albus DSM 14484]
 gi|289181633|gb|ADC88877.1| Radical SAM domain protein [Thermocrinis albus DSM 14484]
          Length = 219

 Score =  160 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 97/227 (42%), Gaps = 38/227 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + EI+ +LQGEG   G  +VF R  GCNL           +C +CD       G  G 
Sbjct: 12  LKVSEIYPSLQGEGLLVGTPSVFVRLQGCNL-----------RCPWCDQPESLHPG-GGA 59

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
             +V+ +   + E         R+ V+TGGEP  Q     L++ L K GF + +ETNGT+
Sbjct: 60  LMSVEDVIGKVRE------YPHRHVVITGGEPFTQSFLTLLVEELLKEGFSVQIETNGTL 113

Query: 123 EPPQGID------WICVSPKAGCDL-----KIKGGQELKLVFPQ-----VNVSPENYIGF 166
              +G+D       I +SPK           +   +ELK V        + + P      
Sbjct: 114 WQ-KGMDTLASHIHITLSPKGVASWFVHPKVLLYARELKWVVDHLLTLDIILMPSFRRFL 172

Query: 167 DFERFSLQPMDGP--FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           + ER  LQP      FL++  +L         + R+  Q HK +G++
Sbjct: 173 EEERVVLQPEGNKEIFLQKALSLQEELLSLGYRVRVLPQLHKLLGLK 219


>gi|330950598|gb|EGH50858.1| radical SAM family protein [Pseudomonas syringae Cit 7]
          Length = 215

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 51/231 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G 
Sbjct: 51  ----IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDSGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGG----------QELKLVFPQVNVSPENYIGFDFE 169
           ++         V P+     DLK  G            EL     QV     +   +D+ 
Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWA 157

Query: 170 RFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208
              L    +D    E          +  +LA      N   RL +Q HK +
Sbjct: 158 VSKLIQYGLDRRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208


>gi|107100431|ref|ZP_01364349.1| hypothetical protein PaerPA_01001456 [Pseudomonas aeruginosa PACS2]
          Length = 215

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 51/232 (21%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   I EIF +LQGE   AG   VF R +GC L           +C +CDT +     + 
Sbjct: 3   QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 48

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           G   ++D + + +         + RY  +TGGEPL Q + + L++ L   G+E+++ET+G
Sbjct: 49  GDVVSLDAIFERVAA------YKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 102

Query: 121 TIEPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVNVSPENY---------IGFDF 168
            ++  +      + P+     DLK  G  E+ +  +  + +  +N            +D+
Sbjct: 103 ALDVSR------IDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDW 156

Query: 169 ERFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208
               L    +D    E              LA      N   RL +Q HK +
Sbjct: 157 AVSKLIEYRLDQRAGEVLFSPSHHQVSARELADWIVADNLPVRLQLQLHKIL 208


>gi|156937024|ref|YP_001434820.1| radical SAM domain-containing protein [Ignicoccus hospitalis
           KIN4/I]
 gi|156566008|gb|ABU81413.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 218

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/236 (28%), Positives = 98/236 (41%), Gaps = 49/236 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  + + E FL++QGEG   G  A F R + CNL           +C +CDT +     +
Sbjct: 1   MSEFEVIEEFLSIQGEGSLVGTPAYFVRLARCNL-----------RCPWCDTKYSW---S 46

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFE--IAV 116
            G +  V ++A+   E  +         VLTGGEPLL        ++ L ++GF+  + +
Sbjct: 47  PGLKVPVSEVAERALESGVG------LIVLTGGEPLLWQLEIRSFLKELEEKGFKGLVQI 100

Query: 117 ETNGTIEPPQ----GIDWICVSPKAGCDLKI-----------KGGQELKLVFPQVNV--- 158
           ETNGTI P       I WI VSPK  CD  I               ELKLV  + ++   
Sbjct: 101 ETNGTIYPSALEGHEI-WITVSPKVTCDYYINFPSTVRRILENFSGELKLVVRRTDLTCV 159

Query: 159 -SPENYIGFDFERFSLQPMD--GPFLEENTNLAISYCFQ---NPKWRLSVQTHKFI 208
                 +G       LQP+D    +      L +          + R+  Q HK +
Sbjct: 160 KKFLEELGDVPRPVVLQPLDEGEGYASAARELVLEVLKDDYLKRRVRVVPQVHKLL 215


>gi|322369255|ref|ZP_08043820.1| hypothetical protein ZOD2009_07199 [Haladaptatus paucihalophilus
           DX253]
 gi|320550987|gb|EFW92636.1| hypothetical protein ZOD2009_07199 [Haladaptatus paucihalophilus
           DX253]
          Length = 264

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 75/169 (44%), Gaps = 24/169 (14%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I E+F +LQGEG  AG  +VF R SGCNL           +C FCD+     + T   
Sbjct: 28  LPINELFYSLQGEGTLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPTH-A 75

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R  VD++   +E        +  + VLTGGEPL+  + V L+  L++RG+   VETNGTI
Sbjct: 76  RMTVDEIVAEVES------YDANHIVLTGGEPLVHEESVTLLDRLSERGYHTTVETNGTI 129

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQ-----ELKLVFPQVNVSPENYIGF 166
                ID   VSPK                E +    +  +  E     
Sbjct: 130 FRDAPIDLASVSPKLASSTPTPETDPKGDGEWEDRHEERRIDVETLAAL 178


>gi|146304722|ref|YP_001192038.1| radical SAM domain-containing protein [Metallosphaera sedula DSM
           5348]
 gi|145702972|gb|ABP96114.1| Radical SAM domain protein [Metallosphaera sedula DSM 5348]
          Length = 210

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 105/230 (45%), Gaps = 39/230 (16%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M+ Y I EIF ++QGEG   G+ + F R +GCNL           +C +CDT F  I+  
Sbjct: 1   MR-YWIVEIFTSIQGEGLVIGKPSNFVRLAGCNL-----------RCVWCDTKFSWIR-E 47

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
            G    ++++   +        +  ++  +TGGEPLLQ  +PL   L   G+ +AVETNG
Sbjct: 48  DGVPMELEEITGKL-------SRSVKWTTITGGEPLLQDILPLASTLKNLGYNVAVETNG 100

Query: 121 TIEPPQG----IDWICVSPK---AGCDLKIKGGQELKLVFPQVNVSPENYI--------- 164
           TI+P Q     +D   VSPK   +G  L+    ++    +  V V P   +         
Sbjct: 101 TIKPKQELRKIVDVFSVSPKLSNSGHKLRYDFSEDWATYYKFVIVEPNRDLREVKNFVEE 160

Query: 165 -GFDFERFSLQP--MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
              D E+  +QP      +++    L+ +       +R+  Q H+ I  R
Sbjct: 161 HRIDPEKVIVQPDGNRQDYIQALKELSDAVMELGLPFRVLPQLHRIISYR 210


>gi|66044666|ref|YP_234507.1| radical SAM family protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255373|gb|AAY36469.1| Radical SAM [Pseudomonas syringae pv. syringae B728a]
          Length = 215

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 61/231 (26%), Positives = 93/231 (40%), Gaps = 51/231 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               +  L D++ +         RY  +TGGEPL Q + + L++ L   G+E+++ET+G 
Sbjct: 51  ----IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIALLKRLCDAGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGG----------QELKLVFPQVNVSPENYIGFDFE 169
           ++         V P+     DLK  G            EL     QV     +   +D+ 
Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWA 157

Query: 170 RFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208
              L    +D    E          +  +LA      N   RL +Q HK +
Sbjct: 158 VSKLIQYGLDRRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208


>gi|116749416|ref|YP_846103.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698480|gb|ABK17668.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 215

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 88/227 (38%), Gaps = 44/227 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + EIF ++QGE G+AG   VF R +GCNL           +C +CDT +   +G    
Sbjct: 3   LRVNEIFHSIQGESGYAGWPCVFVRLTGCNL-----------RCSYCDTRYAYDEG---- 47

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             +   L ++I         +     +TGGEPLLQ + P L+  L   G  + VETNG++
Sbjct: 48  --DFVTLREII---GRVRRFDCPLVEITGGEPLLQPETPELVAELLDLGHTVLVETNGSM 102

Query: 123 EPP-------QGIDWICVSPKAGCDLKIKGG------QELKLVF--PQVNVSPENYIGFD 167
           +         + +D+ C S        ++         E+K V    +            
Sbjct: 103 DISVVDRRCVKIVDFKCPSSGESDANDMENLERLGSRDEIKCVIGTREDYEFAREIERLA 162

Query: 168 FER------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
            ER          P+ G        LA        + RL +Q HK I
Sbjct: 163 AERAGTGSTVCFSPVFGKLEPR--ELAEWILADRLRVRLGLQLHKII 207


>gi|307823680|ref|ZP_07653908.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
 gi|307734974|gb|EFO05823.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
          Length = 213

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 86/232 (37%), Gaps = 50/232 (21%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    I EIF +LQGE    G   VF R +GC L           +C +CDT +    G 
Sbjct: 1   MSSLRITEIFHSLQGESNTVGLPTVFIRLTGCPL-----------RCVYCDTAYAFTGGE 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119
           K G      +  +I +     +    Y  +TGGEPL Q   + L+  L  +G+ +++ET+
Sbjct: 50  KIG------IDAIIAQ---AEQYGTPYITVTGGEPLAQPSCLELMTKLLDKGYVVSLETS 100

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELK----------LVFPQVNVSPENYIGFDFE 169
           G ++    +D   V      DLK     EL               QV     N   +D+ 
Sbjct: 101 GALDVS-KVDQRVV---KVMDLKTPSSGELSRNCYQNIEYLTAKDQVKFVIGNDSDYDWS 156

Query: 170 RFSL-------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           +  L              P+ G      T LA          R  +Q HK +
Sbjct: 157 KSILTEYDLPNLCEVLFSPVMGQQNP--TELAEKILKDRLPVRFQLQLHKIL 206


>gi|53804445|ref|YP_113696.1| radical activating enzyme family protein [Methylococcus capsulatus
           str. Bath]
 gi|53758206|gb|AAU92497.1| radical activating enzyme family protein [Methylococcus capsulatus
           str. Bath]
          Length = 215

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 88/227 (38%), Gaps = 42/227 (18%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
            L  I EIF +LQGE    G   VF R +GC L           +C +CDT +     + 
Sbjct: 4   TLVRITEIFFSLQGETRTVGLPTVFVRLTGCPL-----------RCSYCDTAYAF---SG 49

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNG 120
           G R ++ ++ + +      G    RY  +TGGEPL Q   +PL+ AL   G+++++ET G
Sbjct: 50  GERMSIAEIVERV------GRYGARYVTVTGGEPLAQKACLPLLTALCDEGYQVSLETGG 103

Query: 121 TIEPPQGIDWICV-----SPKAGCDLK--------IKGGQELKLVFPQVNVSPENYIGFD 167
             +       +       +P +G   +        ++ G ++K V              D
Sbjct: 104 AHDISAVDPRVVRVVDLKTPGSGEASRNLYANVDALRQGDQVKFVIADRPDYDWAVAKLD 163

Query: 168 FERFS------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
             R +        P+ G        LA          R  +Q HK +
Sbjct: 164 EHRLAERCEILFSPVAGALQPA--QLAEWILRDRLPVRFQLQLHKLL 208


>gi|85860085|ref|YP_462287.1| queuosine biosynthesis protein [Syntrophus aciditrophicus SB]
 gi|85723176|gb|ABC78119.1| queuosine biosynthesis protein [Syntrophus aciditrophicus SB]
          Length = 215

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/229 (25%), Positives = 93/229 (40%), Gaps = 48/229 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + EIF ++QGE    G   VF R +GCNL           +C +CDT +   +GT   
Sbjct: 3   LKVNEIFYSIQGESSFIGIPCVFVRLTGCNL-----------RCSYCDTRYAYEEGT--- 48

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            +++  + D I               +TGGEPL+Q + P LI+ L  RG  + +ETNG+ 
Sbjct: 49  LWDIPDILDRISS------YHCPLVEITGGEPLIQKETPLLIRDLLDRGCHVLLETNGSR 102

Query: 123 EPPQGIDWICVSPKAGCDLK-----------------IKGGQELKLVFPQVN---VSPEN 162
              + ID  CV      D+K                 + G  E+K V  +      + E 
Sbjct: 103 PI-RTIDERCV---RIVDIKCPSSGESRSNDYRNLDDLTGQDEIKFVLGERKDYEFAKEI 158

Query: 163 YIGFDFE-RFSLQPMDGPF-LEENTNLAISYCFQ-NPKWRLSVQTHKFI 208
            I  +   R S  P+  P     +    + +  + +   R  +Q HK +
Sbjct: 159 LISRNLANRISHPPIFSPVTNSLDPKKLVRWILEDHLPVRFQLQLHKIL 207


>gi|330968882|gb|EGH68948.1| radical SAM family protein [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 215

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/231 (26%), Positives = 93/231 (40%), Gaps = 51/231 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               +  L D++ +         RY  +TGGEPL Q + + L++ L   G+E+++ET+G 
Sbjct: 51  ----IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIALLRRLCDAGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGG----------QELKLVFPQVNVSPENYIGFDFE 169
           ++         V P+     DLK  G            EL     QV     +   +D+ 
Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWA 157

Query: 170 RFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208
              L    +D    E          +  +LA      N   RL +Q HK +
Sbjct: 158 VSKLIQYGLDRRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208


>gi|282900250|ref|ZP_06308202.1| hypothetical protein CRC_01639 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194865|gb|EFA69810.1| hypothetical protein CRC_01639 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 208

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 97/221 (43%), Gaps = 33/221 (14%)

Query: 4   YSIKEIFLT-LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             I E F + +QGEG   G +  F R SGC L            C +CDT +    G   
Sbjct: 8   LPIHETFQSTVQGEGYWTGSLVDFIRLSGCPL-----------SCPWCDTGYA-DGGANL 55

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
            R+    + +L+ E            V++GGEP +   +P L++AL   G ++++ET+G+
Sbjct: 56  PRFE-RTIGELLAELK------SPRIVISGGEPFIHKHLPELVEALLGAGKQVSIETSGS 108

Query: 122 IEPPQGID-WICVSPKAGCDLKIK-------GGQELKLVFP---QVNVSPENYIGFDFER 170
                 +  WI +SPK   + K            E K+V     ++    E         
Sbjct: 109 FWKEVPLSAWITLSPKEHINPKYPVQNQFWSRANEAKIVIETGQEIEFYQEQLSAHPDLC 168

Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
             LQP +     ++ +L +    Q P ++LS+QTHK+IG++
Sbjct: 169 VYLQP-EWNSSSKSLDLILQLLQQKPDYKLSLQTHKYIGLQ 208


>gi|88705614|ref|ZP_01103324.1| radical activating enzyme [Congregibacter litoralis KT71]
 gi|88700127|gb|EAQ97236.1| radical activating enzyme [Congregibacter litoralis KT71]
          Length = 226

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 92/231 (39%), Gaps = 51/231 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I EIF +LQGE    G   VF R +GC L           +C +CDT++       G
Sbjct: 15  TLRITEIFYSLQGEARTVGLPTVFVRLTGCPL-----------RCLYCDTEYAFH---GG 60

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
              +++ +AD +            Y  +TGGEPL Q + +PL+  L  +G+E+++ET+G 
Sbjct: 61  EIMSLEHIADQVAAHKPA------YVTVTGGEPLAQPNCLPLLSRLCDQGYEVSLETSGA 114

Query: 122 IEPPQGIDWICVSPKA--GCDLKIKGGQELKLV----------FPQVNVSPENYIGFDFE 169
           +          V P+     DLK     E+               QV     +   +++ 
Sbjct: 115 MSVAG------VDPRVVKVLDLKTPASGEVARNDYGNVQYLTPNDQVKFVICDRGDYEWA 168

Query: 170 RFSLQP-------MDGPFLEENTNLA----ISYCF-QNPKWRLSVQTHKFI 208
           RF L          D  F   +  LA      +      + RL +Q HK++
Sbjct: 169 RFKLDEYTLGDRVSDVLFSPSHEQLAPRELAEWILGDGLQVRLQLQLHKYL 219


>gi|302187148|ref|ZP_07263821.1| radical SAM family protein [Pseudomonas syringae pv. syringae 642]
          Length = 215

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 61/231 (26%), Positives = 94/231 (40%), Gaps = 51/231 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               +  L D++ +         RY  +TGGEPL Q + +P +++L   G+E+++ET+G 
Sbjct: 51  ----IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIPFLKSLCDAGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGG----------QELKLVFPQVNVSPENYIGFDFE 169
           ++         V P+     DLK  G            EL     QV     +   +D+ 
Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWA 157

Query: 170 RFSLQP--MDGPFLE----------ENTNLAISYCFQNPKWRLSVQTHKFI 208
              L    +D    E          +  +LA      N   RL +Q HK +
Sbjct: 158 VSKLIQYGLDRRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208


>gi|167035186|ref|YP_001670417.1| radical SAM domain-containing protein [Pseudomonas putida GB-1]
 gi|166861674|gb|ABZ00082.1| Radical SAM domain protein [Pseudomonas putida GB-1]
          Length = 215

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 94/231 (40%), Gaps = 51/231 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I E+F +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGTLR 52

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               +D + + +         + RY  +TGGEPL Q + +PL+Q L   G+E+++ET+G 
Sbjct: 53  ---TLDSILEQV------AGFKPRYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQE-----------------LKLVFPQVNVSPENYI 164
           ++       +        DLK  G +E                 +K V    +    ++ 
Sbjct: 104 LDITGTDTRVS----RVVDLKTPGSEESHRNRYENIEQLTRNDQVKFVIC--SREDYDWA 157

Query: 165 GFDFERFSLQPMDGPFL-------EENTNLAISYCFQNPKWRLSVQTHKFI 208
                +++L    G  L        + ++LA      N   R  +Q HK +
Sbjct: 158 VSKLIQYNLSERAGEVLFSPSHHQVKASDLADWIVADNLPVRFQLQLHKLL 208


>gi|255020132|ref|ZP_05292202.1| Queuosine Biosynthesis QueE Radical SAM [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970425|gb|EET27917.1| Queuosine Biosynthesis QueE Radical SAM [Acidithiobacillus caldus
           ATCC 51756]
          Length = 213

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 88/236 (37%), Gaps = 58/236 (24%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    + EIF +LQGE   +G  A F R +GC L           +C +CDT +      
Sbjct: 1   MSRLRVSEIFHSLQGETTASGVPATFVRLTGCPL-----------RCSYCDTAYAFH--- 46

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
            G   + DQ+   + E      ++ R  V+TGGEPL Q  V  L+ AL   G E+ +ET+
Sbjct: 47  GGEWLDADQILARVAE------RDNRLVVITGGEPLAQPAVHALMTALCDGGREVYLETS 100

Query: 120 GTIEPPQGIDWICVSPKA--GCDLKIKGGQEL-----------------KLVFPQVNVSP 160
           G +   +      V P+     DLK  G  EL                 K V    +   
Sbjct: 101 GALSVAE------VDPRVVKILDLKSPGSGELERNLWENLDYLGSRDQVKFVLCNRD--D 152

Query: 161 ENYIGFDFERFSLQ--------PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
             +         LQ        P  G     +  LA          RL +Q HKFI
Sbjct: 153 YEWARTTVRERKLQGRCELLFSPAYGQLTARD--LAEWILEDRLPVRLQIQLHKFI 206


>gi|291612993|ref|YP_003523150.1| radical SAM domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291583105|gb|ADE10763.1| Radical SAM domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 218

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 59/231 (25%), Positives = 88/231 (38%), Gaps = 50/231 (21%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   I EIF +LQGE    G   VF R +GC L           +C +CDT +    G  
Sbjct: 7   ESLRISEIFYSLQGETSRVGLPTVFVRLTGCPL-----------RCSYCDTAYAFTGGQS 55

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
                  QL+ +++E         RY  +TGGEPL Q + + L++AL   G+E+++ET G
Sbjct: 56  ------MQLSAIMDE---VASYAPRYVTVTGGEPLAQKNCLFLLRALCDAGYEVSLETGG 106

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGG-----------------QELKLV------FPQVN 157
            ++   G+D   +      D+K  G                   E+K V      +    
Sbjct: 107 ALDVS-GVDARVM---KVLDIKTPGSGEVQKNLWGNLQHLGRHDEIKFVLCGEADYQWAK 162

Query: 158 VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
              + +           P  G      T LA          RL VQ HK +
Sbjct: 163 QVMQEHALAQRCAVLFSPAQGQLAP--TELAEWILRDRLPVRLQVQLHKLL 211


>gi|213615976|ref|ZP_03371802.1| hypothetical protein SentesTyp_16494 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 178

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 69/167 (41%), Gaps = 21/167 (12%)

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   L K GF   +E
Sbjct: 18  ESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIE 73

Query: 118 TNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKL------VFPQVNVSPENY 163
           T+GT E       W+ VSPK             ++   E+K           ++      
Sbjct: 74  TSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATL 133

Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                   +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 134 SDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 177


>gi|330896138|gb|EGH28359.1| radical SAM family protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 215

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 95/231 (41%), Gaps = 51/231 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I EIF +LQGE   AG   VF R +GC             +C++CD+ +    GT  
Sbjct: 4   TLRITEIFHSLQGETRTAGLPTVFVRLTGCPF-----------RCQYCDSAYAFSGGT-- 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               +  L D++ +         RY  +TGGEPL Q + + L++ L   G+E+++ET+G 
Sbjct: 51  ----IQTLDDILGQ---VASYRPRYVCVTGGEPLAQPNAIALLKRLCDAGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL-----------------KLVF---PQVNVS 159
           ++         V P+     DLK  G +E+                 K V       + +
Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWA 157

Query: 160 PENYIGFDFERFSLQPMDGPFLEE--NTNLAISYCFQNPKWRLSVQTHKFI 208
               I +  +R + + +     +E    +LA      N   RL +Q HK +
Sbjct: 158 VSKLIQYGLDRRAGEVLFSASHQELKGRDLADWIVADNLPVRLQMQLHKIL 208


>gi|170723151|ref|YP_001750839.1| radical SAM domain-containing protein [Pseudomonas putida W619]
 gi|169761154|gb|ACA74470.1| Radical SAM domain protein [Pseudomonas putida W619]
          Length = 215

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 47/229 (20%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I E+F +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               V  L  ++E+       + RY  +TGGEPL Q + +PL+Q L   G+E+++ET+G 
Sbjct: 51  ----VRSLDSIMEQ---VAGFKPRYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQE-----------------LKLVF---PQVNVSPE 161
           ++       I VS     DLK  G +E                 +K V       + +  
Sbjct: 104 LDISA--TDIRVS--RVVDLKTPGSEESHRNLYENIEHLTRNDQVKFVICSREDYDWAVS 159

Query: 162 NYIGFDFERFSLQPMDGP--FLEENTNLAISYCFQNPKWRLSVQTHKFI 208
             I ++    + + +  P     + ++LA      N   R  +Q HK +
Sbjct: 160 KLIQYNLAERAGEVLFSPSHHQVKASDLADWIVADNLPVRFQLQLHKLL 208


>gi|257386657|ref|YP_003176430.1| radical SAM protein [Halomicrobium mukohataei DSM 12286]
 gi|257168964|gb|ACV46723.1| Radical SAM domain protein [Halomicrobium mukohataei DSM 12286]
          Length = 258

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 19/145 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I E+F +LQGEG  AG  +VF R SGCNL           +C FCD+     + +   
Sbjct: 22  LPINELFHSLQGEGKLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPSH-A 69

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
              +D++   IE        +  + V+TGGEPL+  + V L++ L++RG+   VETNGT+
Sbjct: 70  WLTIDEIVAEIE------GYDADHVVVTGGEPLIHEETVDLLERLDERGYHTTVETNGTV 123

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQ 147
                ID   VSPK           
Sbjct: 124 AVDAPIDLASVSPKLASSTPTPERD 148


>gi|325274586|ref|ZP_08140642.1| radical SAM domain-containing protein [Pseudomonas sp. TJI-51]
 gi|324100228|gb|EGB98018.1| radical SAM domain-containing protein [Pseudomonas sp. TJI-51]
          Length = 215

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 47/229 (20%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I E+F +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGTVR 52

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               +D + + +           RY  +TGGEPL Q + +PL+Q L   G+E+++ET+G 
Sbjct: 53  ---TLDSILEQV------AGFRPRYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVN-VSPENYIGF-----DFERFSLQ 174
           ++       +        DLK  G +E  + ++  ++ ++  + + F     +   +++ 
Sbjct: 104 LDIAGTDTRVS----RVVDLKTPGSEESHRNLYSNIDQLTRNDQVKFVICSREDYDWAVS 159

Query: 175 PMDGPFLEE---------------NTNLAISYCFQNPKWRLSVQTHKFI 208
            +    L E                ++LA      N   R  +Q HK +
Sbjct: 160 KLIQYNLAERAGEVLFSPSHHQVSASDLADWIVADNLPVRFQLQLHKLL 208


>gi|269467818|gb|EEZ79570.1| organic radical activating enzyme [uncultured SUP05 cluster
           bacterium]
          Length = 211

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 94/225 (41%), Gaps = 38/225 (16%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M   +I EIF +LQGE    G   VF R +GC L           +C +CDT++      
Sbjct: 1   MVNLNINEIFYSLQGEAREVGLPTVFVRLTGCPL-----------RCTYCDTEYAFKGN- 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
                N   ++ ++ E     + + +Y  +TGGEPL Q++   L+ AL K G+++++ET+
Sbjct: 49  -----NTLSISKILTE---VKKYKTQYVCITGGEPLAQINCHVLLDALVKEGYQVSLETS 100

Query: 120 GTIEPPQ-------GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
           G+I+           +D    S       K     +LK V  Q+     +   FD+    
Sbjct: 101 GSIDVSAVNSGVSIVMDVKTPSSNESKHNKYDNIDKLK-VKDQLKFVIGSKEDFDWSVDV 159

Query: 173 L-------QPMDGPFLEENTNLAI-SYCFQN-PKWRLSVQTHKFI 208
           L       Q +  P  E      +  +  +     R+ VQ HK +
Sbjct: 160 LGRYPTMAQVLFSPVFEAIKPAQLADWILEKQLNVRMQVQLHKLL 204


>gi|220935394|ref|YP_002514293.1| putative radical activating enzyme [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996704|gb|ACL73306.1| putative radical activating enzyme [Thioalkalivibrio sp. HL-EbGR7]
          Length = 227

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 83/231 (35%), Gaps = 54/231 (23%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIFL+LQGE    G   VF R +GC L           +C +CDT++     T G 
Sbjct: 18  LRITEIFLSLQGESRSVGWPTVFVRLTGCPL-----------RCGYCDTEYAF---TGGE 63

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTI 122
             +++ +   +    +       +  +TGGEPL Q   + L+  L   G+E+++ET+G +
Sbjct: 64  WMSLEAVLAQVASHGV------HHVTVTGGEPLAQRACLELLTRLCDAGYEVSLETSGAL 117

Query: 123 EPPQGIDWICVSPKA--GCDLKIKGGQE-----------------LKLV------FPQVN 157
                 D   V P+     DLK     E                 +K V      +    
Sbjct: 118 ------DVAAVDPRVVKVMDLKTPASGEAGRNRYENLGYLSLKDQVKFVICDRADYEWAR 171

Query: 158 VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
            +   +           P  G     +  LA          R  +Q HK +
Sbjct: 172 QTVATHDLTARCEVLFSPSYGQLAPRD--LADWIVADRLPVRFQLQLHKIL 220


>gi|254167785|ref|ZP_04874635.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|289597123|ref|YP_003483819.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|197623313|gb|EDY35878.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|289534910|gb|ADD09257.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
          Length = 209

 Score =  157 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 96/223 (43%), Gaps = 41/223 (18%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + E+F ++QGEG + G    F R +GCNL           +C +CDT++   +   G  
Sbjct: 2   KVNEMFTSIQGEGIYIGVPMFFVRLTGCNL-----------RCEWCDTEYAFYE---GEE 47

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
            ++D +   +EE  +      ++  +TGGEPLLQ +V  LI  L ++ ++I VETNG+I 
Sbjct: 48  MSIDSIIKKVEESGM------KWVCITGGEPLLQEEVYKLIDILLRKDYKILVETNGSIL 101

Query: 124 PPQ---------GIDWICVSPKAGCDLKIKGGQEL------KLVFPQVNVSPENYIGFDF 168
             +          +D    S K    ++ +    L      K V   ++ +   Y     
Sbjct: 102 IDKLPTEENLVISLDIKTPSSKMERAMRFENLNYLGPKDFVKFVI--MDENDFEYAKKII 159

Query: 169 ERFSLQP--MDGPFLEENTN-LAISYCFQNPKWRLSVQTHKFI 208
           E++ +    +  P    N   LA     +    R+  Q HK I
Sbjct: 160 EKYEIDKEIIFQPVGSTNLKWLAEKVVEEKLNVRVLPQLHKII 202


>gi|222475965|ref|YP_002564486.1| Radical SAM domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222454336|gb|ACM58600.1| Radical SAM domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 258

 Score =  157 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 26/194 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I E+F +LQGEG  AG  +VF R SGCNL           +C FCD+     + T G 
Sbjct: 21  LPINEVFYSLQGEGTLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPT-GA 68

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
             +VD + + +        ++  + VLTGGEPL+  + + L++ L   G+   VETNGTI
Sbjct: 69  WRDVDSIIEEVHSH-----EQANHVVLTGGEPLIHEESIELLERLAADGYHTTVETNGTI 123

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQ-------ELKLVFPQVNVSPENYIGFDFE-RFSLQ 174
                ID   +SPK                  E K    ++++   + +  D+E +    
Sbjct: 124 YRDAPIDLASISPKLASSTPTPDRDPKGEGEWEEKHEQNRIDMDALSQMVDDYETQLKFV 183

Query: 175 PMDGPFLEENTNLA 188
             D   L + T+L 
Sbjct: 184 VTDASDLPQITDLV 197


>gi|312623403|ref|YP_004025016.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203870|gb|ADQ47197.1| Radical SAM domain protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 225

 Score =  157 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 45/227 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           +++ E F++++GEG  +G  AVF RF+GCNL           +C +CDT +   +  +  
Sbjct: 14  FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------RCSWCDTKYAN-ENPEYE 61

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
             ++D L + I    I      +   LTGGEPL+Q  +  LI  L   GFE+ +ETNG++
Sbjct: 62  EIDIDNLMNFITSTGI------KRVTLTGGEPLIQPYIYLLIDRLISEGFEVNIETNGSV 115

Query: 123 -------EPPQGIDWICVSPKAGCDLKIK--------GGQELKLVFP--QVNVSPENYIG 165
                  +    +D+ C  P +G + ++             +K V    +   + E  I 
Sbjct: 116 SIKHVPRDAIITMDYKC--PSSGMEHRMIVNNIHLLGEKDVIKFVVATYEDLKTAERIIK 173

Query: 166 FDFER--FSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
               R      P+ G          + +  +N   + R+ +Q HK I
Sbjct: 174 TFKPRCNIYFSPVFGKIEPR---EIVKFVLENGLFEARVQLQLHKII 217


>gi|257452357|ref|ZP_05617656.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R]
 gi|257465851|ref|ZP_05630162.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315917008|ref|ZP_07913248.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|317058900|ref|ZP_07923385.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R]
 gi|313684576|gb|EFS21411.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R]
 gi|313690883|gb|EFS27718.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 222

 Score =  157 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 95/235 (40%), Gaps = 48/235 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y + EIF ++ GEG  AG++A+F RF  CNL            C +CDT +   + +
Sbjct: 1   MPKYKVVEIFESINGEGKKAGQLALFIRFQYCNL-----------NCSYCDTKWANSKNS 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVET 118
                +++++  L +E      K  +   LTGGEPLLQ D+  L++A   ++ FEI +ET
Sbjct: 50  PFTWMSLEEILSLAKE------KRIKNITLTGGEPLLQTDIRSLLEAFSKEKQFEIEIET 103

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIK-----------------GGQELKLVF------PQ 155
           NG++      + I  SP    D K+                      +K V        +
Sbjct: 104 NGSVPLETFRN-IENSPSFTIDYKLPESHMEEYMSLENFSSVHRNDTVKFVVSNRKDLEK 162

Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
                E Y           P+ G          + +  ++      + +Q HKFI
Sbjct: 163 AKEIIEQYSLIGKCAVYFSPVFGKI---ALPSIVDFMKEHHLNGVNMQLQMHKFI 214


>gi|238754504|ref|ZP_04615859.1| hypothetical protein yruck0001_24400 [Yersinia ruckeri ATCC 29473]
 gi|238707333|gb|EEP99695.1| hypothetical protein yruck0001_24400 [Yersinia ruckeri ATCC 29473]
          Length = 170

 Score =  157 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 69/167 (41%), Gaps = 21/167 (12%)

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +    G  +  QL  +  +Q        R+ V+TGGEP +    PL   L + GF   +E
Sbjct: 10  ESDAWGNASEQQLLAIFRQQG----YTARHVVITGGEPCIYDLSPLTTLLEQEGFSCQIE 65

Query: 118 TNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL------VFPQVNVSPENY 163
           T+GT E       W+ VSPK          D  +    E+K           +++  E  
Sbjct: 66  TSGTHEVHCSATTWVTVSPKVNMRGGLTVLDQALIRADEIKHPVGRIRDIEALDILLERL 125

Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
                   +LQP+     EE T L I  C     WRLS+QTHK++ I
Sbjct: 126 HDDKARIIALQPISQK--EEATRLCIETCIAR-NWRLSMQTHKYLNI 169


>gi|16120216|ref|NP_395804.1| hypothetical protein VNG6305C [Halobacterium sp. NRC-1]
 gi|169237476|ref|YP_001690680.1| hypothetical protein OE5197R [Halobacterium salinarum R1]
 gi|10584342|gb|AAG20939.1| Vng6305c [Halobacterium sp. NRC-1]
 gi|167728703|emb|CAP15547.1| hypothetical protein OE5197R [Halobacterium salinarum R1]
          Length = 257

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 67/138 (48%), Gaps = 18/138 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I E+F +LQGEG  AG  +VF R SGCNL           +C FCD+     + T   
Sbjct: 20  LPINELFYSLQGEGKLAGTPSVFVRTSGCNL-----------RCWFCDSYHTSWEPT--- 65

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
            +    + D+I E  +   +   + VLTGGEPLL  D V L+  L   G+   VETNGTI
Sbjct: 66  -HATMSVDDIIAE--VQSYEHADHVVLTGGEPLLHDDAVVLLDRLAALGYHTTVETNGTI 122

Query: 123 EPPQGIDWICVSPKAGCD 140
                ID   VSPK    
Sbjct: 123 HRDAPIDLASVSPKLASS 140


>gi|26987960|ref|NP_743385.1| radical SAM domain protein [Pseudomonas putida KT2440]
 gi|148546497|ref|YP_001266599.1| radical SAM domain-containing protein [Pseudomonas putida F1]
 gi|24982673|gb|AAN66849.1|AE016313_8 radical activating enzyme [Pseudomonas putida KT2440]
 gi|5514780|emb|CAB50782.1| hypothetical protein [Pseudomonas putida]
 gi|148510555|gb|ABQ77415.1| Radical SAM domain protein [Pseudomonas putida F1]
 gi|313497577|gb|ADR58943.1| Radical SAM domain protein [Pseudomonas putida BIRD-1]
          Length = 215

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 94/229 (41%), Gaps = 47/229 (20%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I E+F +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGTVR 52

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               +D + + +         + RY  +TGGEPL Q + +PL+Q L   G+E+++ET+G 
Sbjct: 53  ---TLDSILEQV------AGFKPRYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQE-----------------LKLVF---PQVNVSPE 161
           ++       +        DLK  G +E                 +K V       + +  
Sbjct: 104 LDIAGTDTRVS----RVVDLKTPGSEESHRNRYENIEQLTRNDQVKFVICSREDYDWAVS 159

Query: 162 NYIGFDFERFSLQPMDGPFLEE--NTNLAISYCFQNPKWRLSVQTHKFI 208
             I ++    + + +  P   +   ++LA      N   R  +Q HK +
Sbjct: 160 KLIQYNLAERAGEVLFSPSHHQVNASDLADWIVADNLPVRFQLQLHKLL 208


>gi|190575559|ref|YP_001973404.1| putative radical SAM-superfamily protein [Stenotrophomonas
           maltophilia K279a]
 gi|190013481|emb|CAQ47116.1| putative radical SAM-superfamily protein [Stenotrophomonas
           maltophilia K279a]
          Length = 233

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 86/234 (36%), Gaps = 54/234 (23%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +    I EIF +LQGE   AG   VF R +GC L           +C++CDT +    GT
Sbjct: 21  LPRLKITEIFTSLQGEADTAGWPTVFVRLTGCPL-----------RCQYCDTAYAFHGGT 69

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
               +++D +   +  Q +      R+  +TGGEPL Q   + L+Q L   G ++++ET+
Sbjct: 70  ---WWDIDDIVAEVLAQGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGMDVSLETS 120

Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLV------FP 154
           G ++         V P+     D+K  G  E                 +K V      + 
Sbjct: 121 GALDVSA------VDPRVSRVVDIKTPGSAEAARNRWENLPLLTARDQIKFVICSRGDYD 174

Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                   +           P  G        LA          R  +Q HK +
Sbjct: 175 WAKALVAEHELVKRCTVFFSPSKGEITAR--QLADWIVEDRLPVRFQMQLHKIL 226


>gi|312128624|ref|YP_003993498.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778643|gb|ADQ08129.1| Radical SAM domain protein [Caldicellulosiruptor hydrothermalis
           108]
          Length = 225

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 95/225 (42%), Gaps = 41/225 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           +++ E F++++GEG  +G  AVF RF+GCNL           +C +CDT +   +  +  
Sbjct: 14  FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------RCSWCDTKYAN-ENPEYE 61

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
             ++D L + I    I      +   LTGGEPL+Q  +  LI  L   GFE+ +ETNG++
Sbjct: 62  EIDIDNLMNFITSTGI------KRVTLTGGEPLIQPYIYLLIDRLISEGFEVNIETNGSV 115

Query: 123 -------EPPQGIDWICVSPKAGCDLKIKGG------QELKLVFP--QVNVSPENYIGFD 167
                  +    +D+ C S      + +           LK V    +   + E  I   
Sbjct: 116 SIKHVPRDAIITMDYKCPSSGMEDRMIVDNIHFLGQKDVLKFVVSTYEDLKTAERIIKTF 175

Query: 168 FER--FSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
             R      P+ G          + +  +N     R+ +Q HK I
Sbjct: 176 KPRCNIFFSPVFGKIEPR---EIVKFVLENGLFDARVQLQLHKII 217


>gi|284048974|ref|YP_003399313.1| Radical SAM domain protein [Acidaminococcus fermentans DSM 20731]
 gi|283953195|gb|ADB47998.1| Radical SAM domain protein [Acidaminococcus fermentans DSM 20731]
          Length = 218

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 100/230 (43%), Gaps = 42/230 (18%)

Query: 1   MKL--YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
           MK   + + E+F +++GEG   G +AVF RF+GCNL           +C +CDT +    
Sbjct: 1   MKTETFPVVELFDSIEGEGKRTGAMAVFVRFAGCNL-----------RCSYCDTGYALEP 49

Query: 59  GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
                    + L   I           +   LTGGEPLLQ    L + L++ G+E+ +ET
Sbjct: 50  ADAREHLTEEDLMGRIRR------YPWKKVTLTGGEPLLQPLDSLCRTLSREGYEVNIET 103

Query: 119 NGTIEP----PQGIDWI--CVSPKAGCDLKIK--------GGQELKLVF-PQVNVSPENY 163
           NG +      P+G+ +     SP +G   +++        G   +K V   + ++   + 
Sbjct: 104 NGAVPLLEERPRGLFYTMDVKSPSSGMRGRMRMENLTRLTGEDVVKFVVGSREDLEDMDR 163

Query: 164 IGFDF---ERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
           +  ++    +  + P+ G          + +  ++   + R+ VQ HK I
Sbjct: 164 VLREYTLRSQVYVSPVYGAIEPR---ELVEFVREHKLAQVRVQVQLHKII 210


>gi|254523566|ref|ZP_05135621.1| radical activating enzyme [Stenotrophomonas sp. SKA14]
 gi|219721157|gb|EED39682.1| radical activating enzyme [Stenotrophomonas sp. SKA14]
          Length = 233

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 86/234 (36%), Gaps = 54/234 (23%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +    I EIF +LQGE   AG   VF R +GC L           +C++CDT +    GT
Sbjct: 21  LPRLKITEIFTSLQGEADTAGWPTVFVRLTGCPL-----------RCQYCDTAYAFHGGT 69

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
               +++D +   +  Q +      R+  +TGGEPL Q   + L+Q L   G ++++ET+
Sbjct: 70  ---WWDIDDIVAEVLAQGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGMDVSLETS 120

Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIKGGQEL-----------------KLV------FP 154
           G ++         V P+     D+K  G  E+                 K V      + 
Sbjct: 121 GALDVSA------VDPRVSRVVDIKTPGSAEVARNRWENLPLLTARDQIKFVICSREDYD 174

Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                   +           P  G        LA          R  +Q HK +
Sbjct: 175 WAKALLAEHELVKRCTVFFSPSKGEITAR--QLADWIVEDRLPVRFQMQLHKIL 226


>gi|91200480|emb|CAJ73528.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 211

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 93/226 (41%), Gaps = 48/226 (21%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF ++QGE    G   VF R +GCNL           +C +CDT +   +   G   
Sbjct: 3   INEIFRSIQGETSFTGLPFVFVRLTGCNL-----------RCSYCDTQYAYDE---GNEM 48

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124
            +  + D I+   +      +   +TGGEPL   + P L++ L  R + + VETNG+ + 
Sbjct: 49  PISSIIDKIDSFGL------KSVCVTGGEPLSNHNTPVLVRELLNRNYTVLVETNGSYDV 102

Query: 125 ---PQG----IDWICVSPKAGCDLKI--------KGGQELKLV------FPQVNVSPENY 163
              P+G    +D  C  P +G   K+            E+K V      +         Y
Sbjct: 103 SVLPEGTIRILDVKC--PDSGMSHKMCWHNISHLTKKDEVKFVLSSRNDYEWARSMISKY 160

Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFI 208
              +     + P+ G       +L  S+  + +   RL +Q HK+I
Sbjct: 161 HLTEIAHILMNPVYGMIQP---SLIASWILEDHINVRLQLQMHKYI 203


>gi|71909659|ref|YP_287246.1| radical SAM family protein [Dechloromonas aromatica RCB]
 gi|71849280|gb|AAZ48776.1| Radical SAM [Dechloromonas aromatica RCB]
          Length = 212

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 87/233 (37%), Gaps = 58/233 (24%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE    G   VF R +GC L           +C +CDT +     T G 
Sbjct: 3   LRITEIFYSLQGEASRVGLPTVFVRLTGCPL-----------RCSWCDTTYSF---TGGE 48

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
              V+ +   +       +   R   +TGGEPL Q D +PL+ AL   G+++++ET+G +
Sbjct: 49  AATVESVLAEV------AKYPARQVCVTGGEPLSQKDCLPLLAALCNAGYDVSLETSGAL 102

Query: 123 EPPQGIDWICVSPKAG--CDLKIKGG-----------------QELKLVFP-------QV 156
           +         V P+     DLK                      E+K+V           
Sbjct: 103 DVSA------VDPRVARIMDLKAPDSAESARNLWENLTVLTPRDEIKIVIASRGDYEWAR 156

Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN-PKWRLSVQTHKFI 208
           +V  +  +          P  G    ++      +  ++    R  +Q HK +
Sbjct: 157 DVLRQKKLDQICSVLF-SPAQGVIEPQSLA---EWILEDGLNVRFQLQLHKLL 205


>gi|254482513|ref|ZP_05095752.1| radical SAM domain protein, putative [marine gamma proteobacterium
           HTCC2148]
 gi|214037204|gb|EEB77872.1| radical SAM domain protein, putative [marine gamma proteobacterium
           HTCC2148]
          Length = 222

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 90/228 (39%), Gaps = 47/228 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE    G   VF R +GC L           +C +CDT++     + G 
Sbjct: 12  LRITEIFYSLQGEARTVGVPTVFVRLTGCPL-----------RCVYCDTEYAF---SGGD 57

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
            +++D +   +         + R+  +TGGEPL Q + + L+  L   G+E+++ET+G +
Sbjct: 58  LFSIDDVVSRVAA------YQPRFVTVTGGEPLAQPNCLLLLTRLCDAGYEVSLETSGAM 111

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQE----------LKLVFPQVNVSPENYIGFDFERFS 172
                +D   V      DLK     E          L L   QV     +   +++ RF 
Sbjct: 112 TV-AEVDSRVV---KVIDLKTPASAEMGRNDYDNIPLLLPDDQVKFVICDRDDYEWARFK 167

Query: 173 LQPMDGPFLEENT------------NLAISYCFQNPKWRLSVQTHKFI 208
           L     P    +              LA      N   R+ +Q HK +
Sbjct: 168 LDEYQLPARVSDVLFSPSHGQLSGRELAEWVLEDNLPVRMQLQLHKIL 215


>gi|192361070|ref|YP_001983293.1| radical SAM domain-containing protein [Cellvibrio japonicus
           Ueda107]
 gi|190687235|gb|ACE84913.1| radical SAM domain protein [Cellvibrio japonicus Ueda107]
          Length = 252

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/232 (24%), Positives = 90/232 (38%), Gaps = 55/232 (23%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE    G   VF R +GC L           +C +CD+++       G 
Sbjct: 42  LKITEIFYSLQGEARTVGLPTVFVRLTGCPL-----------RCGYCDSEYAFY---GGE 87

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R ++D++   +           R+  +TGGEP+ Q + V L++ L   G+ +++ET+G +
Sbjct: 88  RLSLDEILARVAR------YHPRHVCVTGGEPMAQRECVTLLKMLCDAGYGVSLETSGAM 141

Query: 123 EPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVF---------PQVNVSPENYIGFDFER 170
                     V P+     DLK  G  E+ +  +          QV     N   +++ R
Sbjct: 142 PLED------VDPRVSKVMDLKTPGSGEVGRNRWENIPLLGEQDQVKFVICNREDYEWAR 195

Query: 171 FSL--------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           F L               P  G        LA      N   R  +Q HK +
Sbjct: 196 FKLDEYELASRAGEVLFSPSHGQVKP--VELAEWILADNLPVRFQLQLHKLL 245


>gi|194366888|ref|YP_002029498.1| Radical SAM domain-containing protein [Stenotrophomonas maltophilia
           R551-3]
 gi|194349692|gb|ACF52815.1| Radical SAM domain protein [Stenotrophomonas maltophilia R551-3]
          Length = 233

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 86/234 (36%), Gaps = 54/234 (23%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +    I EIF +LQGE   AG   VF R +GC L           +C++CDT +    GT
Sbjct: 21  LPRLKITEIFTSLQGEADTAGWPTVFVRLTGCPL-----------RCQYCDTAYAFHGGT 69

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
               +++D +   +  Q +      R+  +TGGEPL Q   + L+Q L   G ++++ET+
Sbjct: 70  ---WWDIDDIVAEVLAQGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGMDVSLETS 120

Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLV------FP 154
           G ++         V P+     D+K  G  E                 +K V      + 
Sbjct: 121 GALDVSA------VDPRVSRVVDIKTPGSAEAARNRLENLPLLTARDQIKFVICSREDYD 174

Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                   +           P  G        LA          R  +Q HK +
Sbjct: 175 WAKAMLAEHDLVKRCTVFFSPSKGEITAR--QLADWIVEDRLPVRFQMQLHKIL 226


>gi|300712358|ref|YP_003738172.1| Radical SAM domain protein [Halalkalicoccus jeotgali B3]
 gi|299126041|gb|ADJ16380.1| Radical SAM domain protein [Halalkalicoccus jeotgali B3]
          Length = 251

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/145 (34%), Positives = 67/145 (46%), Gaps = 19/145 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I E+F +LQGEG  AG  + F R SGCNL           +C FCD+     +   G 
Sbjct: 17  LPINELFHSLQGEGKLAGVPSTFVRTSGCNL-----------RCWFCDSYHTSWE-PAGD 64

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
              ++ + + IE+          + VLTGGEPLL      L++ L +RG+   VETNGTI
Sbjct: 65  WMGMEAILEGIEDHG------ADHVVLTGGEPLLHDASSELLERLAERGYHTTVETNGTI 118

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQ 147
            P   +D   VSPK           
Sbjct: 119 VPDAPVDLASVSPKLASSTPTPEKD 143


>gi|254167036|ref|ZP_04873889.1| radical SAM domain protein, putative [Aciduliprofundum boonei T469]
 gi|197623892|gb|EDY36454.1| radical SAM domain protein, putative [Aciduliprofundum boonei T469]
          Length = 209

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 43/224 (19%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + EIF ++QGEG + G    F R +GCNL           +C +CDT++   +   G  
Sbjct: 2   KVNEIFTSIQGEGIYIGVSMFFVRLTGCNL-----------RCEWCDTEYAFYE---GEE 47

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
            ++D +   +EE  +      ++  +TGGEPLLQ +V  LI  L ++ ++I +ETNG+I 
Sbjct: 48  MSIDSIIKKVEESGM------KWVCITGGEPLLQEEVYKLIDILLRKDYKILLETNGSIL 101

Query: 124 PPQ---------GIDWICVSPKAGCDLKIKGGQEL------KLVFPQVN---VSPENYIG 165
             +          +D    S K    ++ +    L      K V    N    + +    
Sbjct: 102 IDKLPTEENLVISLDIKTPSSKMERAMRFENLNYLGPKDFVKFVIMDENDFEYAKKIIEK 161

Query: 166 FDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           ++ ++    QP+ G  L+    LA     +    R+  Q HK I
Sbjct: 162 YEIDKEIIFQPVGGTNLKW---LAEKVVEEKLNVRVLPQLHKII 202


>gi|254448671|ref|ZP_05062129.1| radical activating enzyme [gamma proteobacterium HTCC5015]
 gi|198261679|gb|EDY85966.1| radical activating enzyme [gamma proteobacterium HTCC5015]
          Length = 235

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 82/226 (36%), Gaps = 44/226 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE   AG    F R +GC L           +C +CD+++       G 
Sbjct: 26  LKITEIFCSLQGESTLAGLPTTFVRLTGCPL-----------RCTYCDSEYAFF---GGD 71

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
            ++ + L D ++              +TGGEPL Q     L+ AL  RG+ +++ET+G +
Sbjct: 72  WWSQEALLDRVDTLG------APNVCVTGGEPLAQRSCHELMSALCDRGYRVSLETSGAL 125

Query: 123 EPPQ-------GIDWICVSPKAGCDLK------IKGGQELKLVFPQV-------NVSPEN 162
           +           +D      +     K      +K G ++K V               E 
Sbjct: 126 DISTVDQRVMVVMDIKTPDSREDHRNKFDNLSQLKAGDQVKFVIGSRADYDWAKQRVAER 185

Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
            I    E     P          +LA          R  +QTHK +
Sbjct: 186 EIDQRCEVLF-SPNYEKLSAR--SLADWIVEDRLPVRFQMQTHKLL 228


>gi|268609642|ref|ZP_06143369.1| MoaA family Fe-S oxidoreductase [Ruminococcus flavefaciens FD-1]
          Length = 225

 Score =  155 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 92/233 (39%), Gaps = 41/233 (17%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  + + E F+++ GEG  AG +A+F RF+GCNL           +C +CDT +   +  
Sbjct: 1   MGTFRLAEHFVSINGEGRLAGELALFLRFTGCNL-----------RCDWCDTMWANEKDA 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
                N   LA + ++ +   E   R   LTGGEPLLQ D+P L   +   G  I +ETN
Sbjct: 50  PYTLMNTSSLAKIAQQAY--EEYGVRNVTLTGGEPLLQEDLPELCGRIAGLGLNIEIETN 107

Query: 120 GTIEPPQGI-DWICVSPKAGCDLKIKGG-----------------QELKLV---FPQVNV 158
           G +     + D     P    D K+                      LK V      +N 
Sbjct: 108 GAVPLEPFLSDKRTGRPVITMDYKLPSSKMEKHMCTDNFRYLKYFDTLKFVCGSLADLNR 167

Query: 159 SPENYIGFDFER-FSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
           + E    +  E    L P+ G          + +  +      RL +Q HK I
Sbjct: 168 AAEIIEEYKPECMIYLSPVFGRIEP---AEMVEFMKERKLGNVRLQLQLHKMI 217


>gi|313202056|ref|YP_004040714.1| radical sam domain-containing protein [Methylovorus sp. MP688]
 gi|312441372|gb|ADQ85478.1| Radical SAM domain protein [Methylovorus sp. MP688]
          Length = 212

 Score =  155 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 92/232 (39%), Gaps = 51/232 (21%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MKL  I EIF +LQGE    G   VF R +GC +           +C +CDT +      
Sbjct: 1   MKL-RIHEIFHSLQGESSRVGLPTVFVRLTGCPM-----------RCVYCDTAYAFH--- 45

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
            GG   +D +   + E          Y  +TGGEPL Q D   L+  L   G+ +++ET 
Sbjct: 46  GGGSMEIDDIMQKVAE------YGAHYVTVTGGEPLAQRDCHVLLTRLCDAGYSVSLETG 99

Query: 120 GTIEPPQGIDWICVSPKAGC--DLKIKGGQEL-KLVFPQ-VNVSPENYIGF--------- 166
           G       +D   V P+     D+K  G  EL K ++    ++  ++ + F         
Sbjct: 100 GA------MDIANVDPRVSVILDIKTPGSGELEKNLWGNLAHLKAQDEVKFVLCDHADYL 153

Query: 167 -DFERFSLQPM--------DGPFLEEN-TNLAISYCFQNPKWRLSVQTHKFI 208
              E    QP+           + + N T LA          R+ VQ HK +
Sbjct: 154 WAKELLDKQPLHRTCSVLFSPVYSQVNPTELAEWILADKLPVRMQVQLHKIL 205


>gi|253997441|ref|YP_003049505.1| Radical SAM domain-containing protein [Methylotenera mobilis JLW8]
 gi|253984120|gb|ACT48978.1| Radical SAM domain protein [Methylotenera mobilis JLW8]
          Length = 212

 Score =  155 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 91/234 (38%), Gaps = 55/234 (23%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MKL  I EIF +LQGE    G   VF R +GC +           +C +CDT +    G+
Sbjct: 1   MKL-KIHEIFYSLQGESSRVGLPTVFVRLTGCPM-----------RCVYCDTAYAFSGGS 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
                   ++ D+I +     E    Y  +TGGEPL Q D   L++AL  +G+ +++ET 
Sbjct: 49  N------MEVEDIITK---VAEYATPYVTVTGGEPLAQKDCHVLLKALCDQGYSVSLETG 99

Query: 120 GTIEPPQGIDWICVSPKAGC--DLKIKGGQELKLVF--PQVNVSPENYIGF------DFE 169
           G       ID   V P+     D+K     ELK        ++   + + F      D+E
Sbjct: 100 GA------IDIAPVDPRVSVILDVKTPDSGELKNNLWGNLAHLKKADEVKFVLCSRADYE 153

Query: 170 R---------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                               P+       +  LA          R+ +Q HK +
Sbjct: 154 WAKDFLAKEQLTAKCSVLFSPVYSQLAPAD--LADWVLADKLPVRMQLQLHKIL 205


>gi|312792432|ref|YP_004025355.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179572|gb|ADQ39742.1| Radical SAM domain protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 225

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 95/225 (42%), Gaps = 41/225 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           +++ E F++++GEG  +G  AVF RF+GCNL            C +CDT++   +  K  
Sbjct: 14  FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------SCSWCDTNYA-TENPKYE 61

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           + ++D L   I    I      +   LTGGEPL+Q  +  LI  L   GFE+ +ETNG++
Sbjct: 62  QIDIDTLLSFIASTGI------KRVTLTGGEPLIQPYIYILIDRLIYEGFEVNIETNGSV 115

Query: 123 -------EPPQGIDWICVSPKAGCDLKIKGG------QELKLVFP--QVNVSPENYIGFD 167
                  +    +D+ C S      + +           LK V    +   S E  I   
Sbjct: 116 SIKHVPRDAIITMDYKCPSSGMEDRMIVDNINFLGQKDVLKFVVGTYEDLKSAERIIKTF 175

Query: 168 FER--FSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
             R      P+ G          + +  +N     RL +Q HK I
Sbjct: 176 KPRCNIFFSPVFGKIEPR---EIVKFLLENELFDARLQLQLHKII 217


>gi|42521688|ref|NP_967068.1| radical activating enzyme [Bdellovibrio bacteriovorus HD100]
 gi|39574218|emb|CAE77722.1| radical activating enzyme [Bdellovibrio bacteriovorus HD100]
          Length = 212

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 89/232 (38%), Gaps = 54/232 (23%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF ++QGE  + G   VF R + CNL           +C +CDT +   +G   
Sbjct: 1   MLKINEIFYSIQGETTYVGCPTVFVRLTACNL-----------RCTYCDTKYSYYEGE-- 47

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
               +  L  +I E       +     +TGGEPLLQ +V  L++ L  +G+ +++ET+G+
Sbjct: 48  ----MQTLEAIIAE---IDSHKAPNVCITGGEPLLQKEVHTLMKTLCDKGYLVSLETSGS 100

Query: 122 IEPPQGIDWICVSP--KAGCDLKIKGGQELK-LVFPQVNVS-PENYIGFDF--------- 168
                      V P  K   D+K          V   +  S P     F           
Sbjct: 101 KSVEM------VDPRVKIILDVKTPDSGAADSFVMENIGFSTPSTEYKFVICSEKDFEWS 154

Query: 169 ERFSLQ------------PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           E F  Q            P  G   E    LA     +N   RL +Q HK+I
Sbjct: 155 EEFCRQHNLFEKFVVLYSPSYGQVSERW--LAEKILQKNSSARLQLQLHKYI 204


>gi|29653453|ref|NP_819145.1| radical SAM domain-containing protein [Coxiella burnetii RSA 493]
 gi|153207177|ref|ZP_01945956.1| radical SAM domain protein [Coxiella burnetii 'MSU Goat Q177']
 gi|154707102|ref|YP_001425323.1| queuosine biosynthesis protein [Coxiella burnetii Dugway 5J108-111]
 gi|161830218|ref|YP_001596061.1| radical SAM domain-containing protein [Coxiella burnetii RSA 331]
 gi|165918380|ref|ZP_02218466.1| radical SAM domain protein [Coxiella burnetii RSA 334]
 gi|212213378|ref|YP_002304314.1| queuosine biosynthesis protein [Coxiella burnetii CbuG_Q212]
 gi|212219428|ref|YP_002306215.1| queuosine biosynthesis protein [Coxiella burnetii CbuK_Q154]
 gi|29540715|gb|AAO89659.1| queuosine biosynthesis protein [Coxiella burnetii RSA 493]
 gi|120576838|gb|EAX33462.1| radical SAM domain protein [Coxiella burnetii 'MSU Goat Q177']
 gi|154356388|gb|ABS77850.1| queuosine biosynthesis protein [Coxiella burnetii Dugway 5J108-111]
 gi|161762085|gb|ABX77727.1| radical SAM domain protein [Coxiella burnetii RSA 331]
 gi|165917886|gb|EDR36490.1| radical SAM domain protein [Coxiella burnetii RSA 334]
 gi|212011788|gb|ACJ19169.1| queuosine biosynthesis protein [Coxiella burnetii CbuG_Q212]
 gi|212013690|gb|ACJ21070.1| queuosine biosynthesis protein [Coxiella burnetii CbuK_Q154]
          Length = 213

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 85/235 (36%), Gaps = 58/235 (24%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    I EIF +LQGE    G   VF R +GC L           +C +CDT +    G 
Sbjct: 1   MDKLRITEIFYSLQGETKTVGLPTVFVRLTGCPL-----------RCHYCDTPYAFYGGQ 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
                    L D++ +       + RY  +TGGEPL Q   +PL+Q L    + +++ET+
Sbjct: 50  S------LLLEDVVHQ---VASYQTRYVTVTGGEPLAQPACLPLLQRLCDLNYRVSLETS 100

Query: 120 GTIEPPQGIDWICVSPKA--GCDLKIKGGQE-----------------LKLVFPQVNVSP 160
           G +      D   V P+     D+K  G +E                 +K V    +   
Sbjct: 101 GAL------DISNVDPRVIKIVDVKTPGSKEMARNRFGNFEYLLPHDQVKFVIC--DRRD 152

Query: 161 ENYIGFDFERFSL--------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
             +      R+ L         P       +   LA          R  +Q HK+
Sbjct: 153 YEWAKDIINRYDLISRAEVLFSP--SHEQLDKQQLADWIVEDRLSVRFQLQLHKY 205


>gi|313126238|ref|YP_004036508.1| organic radical activating enzyme [Halogeometricum borinquense DSM
           11551]
 gi|312292603|gb|ADQ67063.1| organic radical activating enzyme [Halogeometricum borinquense DSM
           11551]
          Length = 257

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 19/142 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I E+F +LQGEG   G  + F R SGCNL           +C FCD+     + T   
Sbjct: 19  LPINELFASLQGEGKLVGVPSTFVRTSGCNL-----------RCWFCDSYHTSWEPTH-A 66

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
              VD++   +        ++  + VLTGGEPL+  +  PL++ L + G+ + VETNGT+
Sbjct: 67  WMGVDEIVSAVTA------RDPDHVVLTGGEPLIHDETAPLLERLAEHGYHVTVETNGTL 120

Query: 123 EPPQGIDWICVSPKAGCDLKIK 144
            P   ID   +SPK        
Sbjct: 121 VPDAPIDLASISPKLSTSTPTP 142


>gi|146295178|ref|YP_001178949.1| radical SAM domain-containing protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145408754|gb|ABP65758.1| Radical SAM domain protein [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 217

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 96/230 (41%), Gaps = 43/230 (18%)

Query: 1   MKL--YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
           MK   + + E F++++GEG  +G  A+F RF+GCNL            C +CDT +   Q
Sbjct: 1   MKKAKFKVVEKFVSIEGEGIRSGFPAIFLRFAGCNL-----------NCSYCDTRYA-TQ 48

Query: 59  GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVE 117
                   +DQ+ + +           +   LTGGEPL+Q  +  LI +L K GFE+ +E
Sbjct: 49  NPDYEEITLDQILEYVNSIG------FKRVTLTGGEPLIQPHIHDLIDSLIKEGFEVNIE 102

Query: 118 TNGTIEP-------PQGIDWICVSPKAGCDLKIKG------GQELKLVF-PQVNVSPENY 163
           TNG+++           +D+ C S      + ++          LK V     ++     
Sbjct: 103 TNGSVDIRYVNRNAIITMDYKCPSSGMEDKMLLENIKYLGKSDVLKFVVGTNQDLERAFE 162

Query: 164 IGFDFE---RFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
           I   FE        P+ G          +S+   +     RL +Q HK I
Sbjct: 163 IIRLFEPSCNIYFSPVHGKIEP---KEIVSFILSHKLQNCRLQLQLHKII 209


>gi|302879778|ref|YP_003848342.1| Radical SAM domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302582567|gb|ADL56578.1| Radical SAM domain protein [Gallionella capsiferriformans ES-2]
          Length = 219

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 94/229 (41%), Gaps = 50/229 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE    G   VF R +GC L           +C +CDT +    G    
Sbjct: 10  LRITEIFFSLQGETRLIGLPTVFVRLTGCPL-----------RCVYCDTAYAFSGGKNH- 57

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
                 LA+++++     + + RY  +TGGEPL Q + +PL++AL   G+++++ET+G +
Sbjct: 58  -----TLAEILQQ---VAQYKTRYVTVTGGEPLAQRNCLPLLKALCDAGYQVSLETSGAL 109

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVNV-SPENYIGF-------------- 166
           +    +D   +      D+K     E+ K  +  + + +P++ I F              
Sbjct: 110 DI-GAVDARVM---RVVDIKTPASGEVDKNRWENLAILTPQDEIKFVLCDENDYDWACQI 165

Query: 167 -------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                  D       P  G      T LA          R  +Q HK +
Sbjct: 166 LAQYHLADQCPVLFSPAQGDLDP--TQLADWILRDGLPVRFQLQLHKIL 212


>gi|30248245|ref|NP_840315.1| radical activating enzyme [Nitrosomonas europaea ATCC 19718]
 gi|30180130|emb|CAD84132.1| Radical activating enzymes [Nitrosomonas europaea ATCC 19718]
          Length = 211

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 91/230 (39%), Gaps = 50/230 (21%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGE    G   VF R +GC L           +C +CDT +    G   
Sbjct: 1   MLRITEIFYSLQGETSRMGLPTVFVRLTGCPL-----------RCGYCDTGYAFSGGKS- 48

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
                  +++++ E         RY  +TGGEPL Q D + L+ AL  RG+ +++ET+G 
Sbjct: 49  -----MSISEIMGE---VASFSPRYVTVTGGEPLAQADSLVLLAALCDRGYSVSLETSGA 100

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLV----------FPQVNVSPENYIGFDFERF 171
           ++    +D   VS     D+K  G  E++              ++     +   +D+ R 
Sbjct: 101 LDI-ARVD-ARVS--RIVDIKTPGSGEVEKNHWNNLAYLTSHDEIKFVLCDRADYDWARQ 156

Query: 172 SL-------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
            L              P  G  +  +    I         RL +Q HK +
Sbjct: 157 KLLELKLDVICPVLFSPAYGQLVPADLAAWI--LQDQLPVRLQLQLHKLL 204


>gi|188577425|ref|YP_001914354.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521877|gb|ACD59822.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 213

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 90/234 (38%), Gaps = 54/234 (23%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    I EIFL+LQGE   AG   VF R +GC L           +C +CDT +      
Sbjct: 1   MPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCVYCDTAYAFH--- 46

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
            G  +++D +   +    +      R+  +TGGEPL Q   + L+Q L   G+++++ET+
Sbjct: 47  GGEWHDIDDVLAEVATHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETS 100

Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVNVSPE-NYIGF------DFE 169
           G ++         V P+     D+K    G+E +  +  + +    + I F      D+E
Sbjct: 101 GALDVSA------VDPRVSRVVDIKTPASGEEARNRWENLLLLTARDQIKFVICSRADYE 154

Query: 170 ---------------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                               P           LA          R  +Q HK +
Sbjct: 155 WSREIVAAHALDRRCTVWFSPSKSEVGPR--QLADWIVADRLPVRFQMQLHKLL 206


>gi|188990578|ref|YP_001902588.1| Putative radical activating enzyme [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732338|emb|CAP50530.1| Putative radical activating enzyme [Xanthomonas campestris pv.
           campestris]
          Length = 227

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 87/230 (37%), Gaps = 46/230 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +    I EIFL+LQGE   AG   VF R +GC L           +C +CDT +      
Sbjct: 15  LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCTYCDTAYAFH--- 60

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
            G  +++D +   +    +      R+  +TGGEPL Q   + L+  L   GF++++ET+
Sbjct: 61  GGEWHDIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLALLHKLCDAGFDVSLETS 114

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQE----------LKLVFPQVNVSPENYIGFDFE 169
           G ++       +        D+K     E          L     Q+     +   +++ 
Sbjct: 115 GALDVSA----VDARVSRVVDIKTPASGEDHRNRWDNLPLLTARDQIKFVICSRADYEWS 170

Query: 170 R--FSLQPMDG---------PFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           R   + Q +D                  LA       P  R  +Q HK +
Sbjct: 171 RDVVATQALDRRCTVWFSPSKGQVSARELADWIVADRPPVRFQMQLHKIL 220


>gi|284164674|ref|YP_003402953.1| radical SAM protein [Haloterrigena turkmenica DSM 5511]
 gi|284014329|gb|ADB60280.1| Radical SAM domain protein [Haloterrigena turkmenica DSM 5511]
          Length = 274

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 51/142 (35%), Positives = 70/142 (49%), Gaps = 19/142 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I E+F +LQGEG  AG  +VF R SGCNL           +C FCD+     + T   
Sbjct: 33  LPINELFYSLQGEGTLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPTH-A 80

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
              ++++   IE        +  + VLTGGEPL+  + V L++AL+ RG+   VETNGTI
Sbjct: 81  WLGLEEILAEIESH------DADHVVLTGGEPLIHEESVALLEALDDRGYHTTVETNGTI 134

Query: 123 EPPQGIDWICVSPKAGCDLKIK 144
                ID   +SPK        
Sbjct: 135 NRDAPIDLASISPKLESSTPTP 156


>gi|302870906|ref|YP_003839542.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302573765|gb|ADL41556.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 224

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 95/225 (42%), Gaps = 41/225 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           +++ E F++++GEG  +G  AVF RF+GCNL            C +CDT +   +  K  
Sbjct: 13  FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------SCSWCDTKYA-TENPKYE 60

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           + ++D L + I    I      +   LTGGEPL+Q  +  LI  L   GFE+ +ETNG++
Sbjct: 61  QIDIDTLLNFIASTGI------KRVTLTGGEPLIQPYIYILIDRLIYEGFEVNIETNGSV 114

Query: 123 -------EPPQGIDWICVSPKAGCDLKIKGG------QELKLVF--PQVNVSPENYIGFD 167
                  +    +D+ C S      + +           LK V    +   S E  I   
Sbjct: 115 SIKCVPRDAIITMDYKCPSSGMEDRMIVDNINFLGQKDVLKFVVATHEDLKSAERIIKTF 174

Query: 168 FER--FSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
             +      P+ G          + +  +N     R+ +Q HK I
Sbjct: 175 NPKCNIFFSPVFGKIEP---AEIVKFLLENGLFDARVQLQLHKII 216


>gi|15607013|ref|NP_214395.1| hypothetical protein aq_2035 [Aquifex aeolicus VF5]
 gi|2984272|gb|AAC07798.1| hypothetical protein aq_2035 [Aquifex aeolicus VF5]
          Length = 219

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 93/224 (41%), Gaps = 39/224 (17%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
            L ++ E++ ++QGEG   G  +VF R  GCNL           +C +CD          
Sbjct: 11  TLIALNEVYESIQGEGLLVGLPSVFIRLQGCNL-----------RCPWCDQPEAL--SFS 57

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI-QALNKRGFEIAVETNG 120
           G +  +  L + ++      +   ++ V+TGGEP    ++P I + L   G+ + +ETNG
Sbjct: 58  GRKVKLSSLINELK------KFTAKHIVITGGEPFAHRELPFIVEFLLSEGYSVQIETNG 111

Query: 121 TIEPPQGIDW-----ICVSPKAGCDL-----KIKGGQELKLVFPQVNVSPENYIGFDFER 170
           T+   +   +     I  SPK           +K  +ELK V  +   S E     +FER
Sbjct: 112 TLWVEEMEKFAEGIHITCSPKGVAKYYVHPKILKYAKELKFVVDK-EFSKEVLKKEEFER 170

Query: 171 FS------LQPMDG--PFLEENTNLAISYCFQNPKWRLSVQTHK 206
           F       LQP       +E+   +      +    R+  Q HK
Sbjct: 171 FLREGKVVLQPESNRKEMMEKALKIQKELLKECYTVRVIPQVHK 214


>gi|54297969|ref|YP_124338.1| hypothetical protein lpp2024 [Legionella pneumophila str. Paris]
 gi|53751754|emb|CAH13176.1| hypothetical protein lpp2024 [Legionella pneumophila str. Paris]
          Length = 217

 Score =  154 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 91/234 (38%), Gaps = 50/234 (21%)

Query: 1   MKLY----SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG 56
           MK +     I EIF +LQGE    G   VF R +GC L           +C++CDT +  
Sbjct: 1   MKRFNEQLRITEIFHSLQGESVTVGLPTVFVRLTGCPL-----------RCQYCDTAYAF 49

Query: 57  IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIA 115
              + G    +D + + +         + ++  +TGGEPL Q   VPL+  L   G+ ++
Sbjct: 50  ---SGGEVVEIDDILNKV------ASYQCQHVCVTGGEPLAQPGCVPLLSKLCDAGYSVS 100

Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF------- 166
           +ET+G  +    +D   +      DLK    +E  K +   +N + P + I F       
Sbjct: 101 LETSGARDI-ASVDQRVM---IVMDLKTPDSKEADKNLLSNLNFLKPTDQIKFVLCSRND 156

Query: 167 ------------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                         ER  L           T+LA          R  +Q HK +
Sbjct: 157 YEWACSMLSEYQLAERVQLLFSPSWNQLNPTDLANWIIQDKLPVRFQLQLHKIL 210


>gi|254000097|ref|YP_003052160.1| Radical SAM domain-containing protein [Methylovorus sp. SIP3-4]
 gi|253986776|gb|ACT51633.1| Radical SAM domain protein [Methylovorus sp. SIP3-4]
          Length = 212

 Score =  154 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 92/232 (39%), Gaps = 51/232 (21%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MKL  I EIF +LQGE    G   VF R +GC +           +C +CDT +    G+
Sbjct: 1   MKL-RIHEIFHSLQGESSRVGLPTVFVRLTGCPM-----------RCVYCDTAYAFHGGS 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
                 +D +   + E          Y  +TGGEPL Q D   L+  L   G+ +++ET 
Sbjct: 49  S---MEIDDIMQKVAE------YGAHYVTVTGGEPLAQRDCHVLLTRLCDAGYSVSLETG 99

Query: 120 GTIEPPQGIDWICVSPKAGC--DLKIKGGQEL-KLVFPQ-VNVSPENYIGF--------- 166
           G       +D   V P+     D+K  G  EL K ++    ++  ++ + F         
Sbjct: 100 GA------MDIANVDPRVSVILDIKTPGSGELEKNLWGNLAHLKAQDEVKFVLCDHADYL 153

Query: 167 -DFERFSLQPM--------DGPFLEEN-TNLAISYCFQNPKWRLSVQTHKFI 208
              E    QP+           + + N T LA          R+ VQ HK +
Sbjct: 154 WAKELLDKQPLHRTCSVLFSPVYSQVNPTELAEWILADKLPVRMQVQLHKIL 205


>gi|74318221|ref|YP_315961.1| radical activating enzyme [Thiobacillus denitrificans ATCC 25259]
 gi|74057716|gb|AAZ98156.1| radical activating enzyme; radical SAM family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 216

 Score =  154 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 85/235 (36%), Gaps = 58/235 (24%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
               I EIFL+LQGE    G   VF R +GC L           +CR+CDT +       
Sbjct: 5   PTLRITEIFLSLQGETSRTGLATVFVRLAGCPL-----------RCRWCDTTYSF---QG 50

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           G   ++D++   +               +TGGEPL Q + +PL+  L   G+ +++ET+G
Sbjct: 51  GETVSLDEVLARV------AGFGVSVVCVTGGEPLAQKNCLPLLARLCDAGYSVSLETSG 104

Query: 121 TIEPPQGIDWICVSPKAGCDLKIK-------------------GGQELKLVFPQVNVSPE 161
            ++         V P+    + +K                      E+K V    + +  
Sbjct: 105 ALDVSA------VDPRVSRIVDVKPPESGEVARNRWENLAHLGAHDEIKFVL--ADRADY 156

Query: 162 NYIGFDFERFSL--------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
            +        +L         P+ G        LA          R+ VQ HK +
Sbjct: 157 EWAREVLRERALERVCPVLFSPVQGELAPA--QLAEWILADRLPVRMQVQLHKLL 209


>gi|301063545|ref|ZP_07204071.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300442354|gb|EFK06593.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 215

 Score =  154 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 94/228 (41%), Gaps = 44/228 (19%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
               + EIF ++QGE  +AG   VF R +GCNL           +C +CDT +      +
Sbjct: 1   MTLRVNEIFYSIQGESSYAGLPCVFVRLTGCNL-----------RCSYCDTRYAY---EE 46

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           GG   ++ + + I         + R   +TGGEPL+Q   P LI++L + G+++ +ETNG
Sbjct: 47  GGILEINHIFEQI------APMQCRLVEITGGEPLVQEKTPILIESLLEDGYDVLLETNG 100

Query: 121 TIEPP-------QGIDWICVSPKAGCDLKIKG------GQELKLVF-PQVNVSPENYIGF 166
           + +         + +D  C S      + ++         E+K V   + +      I  
Sbjct: 101 SHDISRVDNRCVKIVDIKCPSSGMHNHMDMENLNRLSAKDEIKFVLGTREDYEYAREIVI 160

Query: 167 DFERFSL-------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
             +   L        P+ G    E   LA      +   RL +Q  K+
Sbjct: 161 RMKSRFLKISSVNFSPVFGQLKPE--TLAEWILEDHLPCRLHLQLQKY 206


>gi|288818575|ref|YP_003432923.1| radical SAM domain protein [Hydrogenobacter thermophilus TK-6]
 gi|288787975|dbj|BAI69722.1| radical SAM domain protein [Hydrogenobacter thermophilus TK-6]
 gi|308752166|gb|ADO45649.1| Radical SAM domain protein [Hydrogenobacter thermophilus TK-6]
          Length = 218

 Score =  154 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 96/226 (42%), Gaps = 37/226 (16%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
            SI EI+ ++QGEG   G+  +F RF GCNL           +C +CD         K  
Sbjct: 12  LSINEIYPSVQGEGLLIGKPCLFVRFQGCNL-----------RCPWCDEPSAL--SFKRA 58

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI-QALNKRGFEIAVETNGTI 122
             ++ +L   ++      +   ++ VLTGGEP  + ++ L+ Q L  RG+ + +ETNGT+
Sbjct: 59  NTDLKELLQELQ------KYPQKHVVLTGGEPFAEPNLHLLVQELLCRGYSVQIETNGTL 112

Query: 123 EPPQGIDW-----ICVSPKAGCDL-----KIKGGQELKLVFPQV----NVSPENYIGFDF 168
                 +      I  SPK   D       +   +ELK V         +    ++ F  
Sbjct: 113 WNENLREVVSQVHITCSPKGVADWYVHPAVLSSAKELKFVVDHELCYNVIKRREFMPFLE 172

Query: 169 ERF-SLQPMDG--PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           E    LQP      FL++   L      +    R+  Q HK IG++
Sbjct: 173 EGLVVLQPEGNKTKFLQKALELQNLLLREGYTVRVVPQMHKLIGLK 218


>gi|114330319|ref|YP_746541.1| radical SAM domain-containing protein [Nitrosomonas eutropha C91]
 gi|114307333|gb|ABI58576.1| Radical SAM domain protein [Nitrosomonas eutropha C91]
          Length = 211

 Score =  154 bits (390), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 89/230 (38%), Gaps = 50/230 (21%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + EIF +LQGE    G   VF R +GC L           +C +CDT +     + G
Sbjct: 1   MLRVTEIFYSLQGETSRMGLPTVFIRLTGCPL-----------RCGYCDTSYAF---SGG 46

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
              ++ ++   +            Y  +TGGEPL Q D + L+ AL  RG+ +++ET+G 
Sbjct: 47  ESMDISEIMRKV------ASFSPHYVTVTGGEPLAQADSLTLLTALCDRGYSVSLETSGA 100

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGFDFE-----RFSLQ 174
           ++  +    +        D+K  G  E+ K  +  ++ ++  + I F         +++Q
Sbjct: 101 LDISRVDTRVS----RILDIKTPGSGEMEKNYWNNLDCLTAHDEIKFVLCDRTDYNWAMQ 156

Query: 175 ----------------PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                           P+            I         RL  Q HK +
Sbjct: 157 KLLTLELANICPVLFSPVYNQLDPAALAAWI--LQDRLPVRLQFQLHKLL 204


>gi|83593294|ref|YP_427046.1| radical SAM family protein [Rhodospirillum rubrum ATCC 11170]
 gi|83576208|gb|ABC22759.1| Radical SAM [Rhodospirillum rubrum ATCC 11170]
          Length = 235

 Score =  154 bits (390), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 101/238 (42%), Gaps = 48/238 (20%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   I+E+F TLQGEG  +G+ +VF R +GCNL           +C +CDTDF     + 
Sbjct: 16  ESLWIQEVFYTLQGEGPFSGQPSVFVRTAGCNL-----------RCAWCDTDF----ESS 60

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
             +  + +L  +I+ +     +     VLTGGEPL Q   PL++AL  RG  + +ETNGT
Sbjct: 61  AWKPPLPELLAVIDSRRP---RVCDLVVLTGGEPLRQEVGPLVRALLARGLRVQIETNGT 117

Query: 122 IEPP----QGIDWICVSPKAGC--DLKIKGGQELKLVFPQVNVSPENYIGF-------DF 168
           +        G+  +C SPK        +      K V       P + +           
Sbjct: 118 LWRDLPFGPGLSIVC-SPKTRTLDPQLVPRIDAFKYVIAAGETDPTDGLPALSTQHPGRA 176

Query: 169 ERF---------SLQPMD------GPFLEENTNLAISYCFQ-NPKWRLSVQTHKFIGI 210
           ER           + P D       P   E+ NLA +        +RL VQ HK + I
Sbjct: 177 ERLFRPPPGVPVFVMPRDDHGTPARPGRGEDDNLAEAAASALRFGYRLCVQVHKILKI 234


>gi|289661912|ref|ZP_06483493.1| putative radical activating enzyme [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 227

 Score =  154 bits (390), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 90/234 (38%), Gaps = 54/234 (23%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +    I EIFL+LQGE   AG   VF R +GC L           +C +CDT +      
Sbjct: 15  LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAYAFH--- 60

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
            G  +++D +   +    +      R+  +TGGEPL Q   + L+Q L   G+++++ET+
Sbjct: 61  GGEWHDIDAIVAEVARHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETS 114

Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVNVSPE-NYIGF------DFE 169
           G ++         V P+     D+K    G+E +  +  + +    + I F      D+E
Sbjct: 115 GALDVSA------VDPRVSRVVDIKTPASGEEARNRWENLPLLTARDQIKFVICSRADYE 168

Query: 170 ---------------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                               P           LA          R  +Q HK +
Sbjct: 169 WSREIVAAHALDRRCTVWFSPSKSEVSPR--QLADWIVADRLPVRFQMQLHKLL 220


>gi|163815376|ref|ZP_02206751.1| hypothetical protein COPEUT_01541 [Coprococcus eutactus ATCC 27759]
 gi|158449350|gb|EDP26345.1| hypothetical protein COPEUT_01541 [Coprococcus eutactus ATCC 27759]
          Length = 222

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 46/234 (19%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y + E F+++ GE   AG +AVF RF+GCNL            C +CDT +    G 
Sbjct: 1   MSTYRVVERFISINGEAARAGELAVFIRFAGCNL-----------NCGYCDTKWANEPGV 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118
                  D+L D +    +      +   LTGGEPL+Q D+   L+    +    + +ET
Sbjct: 50  DYQELTEDELVDYVRRTEV------KNVTLTGGEPLIQKDIDKLLLAFALEDDIRVEIET 103

Query: 119 NGTIEPPQ----------GIDWICVSPKAGCDL------KIKGGQELKLVF-PQVNVS-- 159
           NG+++  +           +D+ C S     D+       I     +K V   Q ++   
Sbjct: 104 NGSVDIAEFKALGGNVSYTLDYKCPSSGMESDMCLANYNYIDKNDSVKFVVGSQEDLEKC 163

Query: 160 ---PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
                 Y   +  R  + P+ G     +    + +  +N     +L +Q HKFI
Sbjct: 164 LEIIREYALDERTRVFISPVYGSIDPAD---IVDFMIENGMNDVKLQLQLHKFI 214


>gi|15838492|ref|NP_299180.1| hypothetical protein XF1894 [Xylella fastidiosa 9a5c]
 gi|9106987|gb|AAF84700.1|AE004009_7 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 227

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 90/227 (39%), Gaps = 46/227 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIFL+LQGE    G   VF R +GC L           +C++CDT +    G    
Sbjct: 18  LKISEIFLSLQGEANSVGWPTVFVRLTGCPL-----------RCQYCDTAYAFHGGEWC- 65

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
             ++D +   +    +      R+  +TGGEPL Q   + L++ L   GFE+++ET+G +
Sbjct: 66  --SIDTIVSEVRSYGV------RHVCVTGGEPLAQKRCLLLLEKLCDAGFEVSLETSGAL 117

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQ-VNVSPENYIGF-------------- 166
           +       + +      D+K  G  E  +  +P    ++P + I F              
Sbjct: 118 DIAA----VDLRVSRVVDIKTPGSGEAHRNHWPNLALLTPHDQIKFVLCSRADYEWARTC 173

Query: 167 ----DFERFSLQPMDGPFLEEN-TNLAISYCFQNPKWRLSVQTHKFI 208
               + ER  +        +   T LA          R  +Q HK +
Sbjct: 174 VAEHELERRCMVWFSPSKQDIAPTVLADWIISDRLGVRFQLQLHKLL 220


>gi|294626853|ref|ZP_06705445.1| radical activating enzyme [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292598867|gb|EFF43012.1| radical activating enzyme [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 227

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 91/234 (38%), Gaps = 54/234 (23%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +    I EIFL+LQGE   AG   VF R +GC L           +C +CDT +      
Sbjct: 15  LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAYAFH--- 60

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
            G  +++D +   +    +      R+  +TGGEPL Q   + L++ L   G+++++ET+
Sbjct: 61  GGQWHDIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETS 114

Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIKG-GQELKLVFPQVNVSPE-NYIGF------DFE 169
           G ++         V P+     D+K  G G+E +  +  + +    + I F      D+E
Sbjct: 115 GALDVSA------VDPRVSRVVDIKTPGSGEEARNRWENLPLLTARDQIKFVICSRADYE 168

Query: 170 ---------------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                               P           LA          R  +Q HK +
Sbjct: 169 WSREIVAAHALDRRCTVWFSPSKSEVSPR--QLADWIVADRLPVRFQMQLHKLL 220


>gi|90417119|ref|ZP_01225047.1| radical activating enzyme family protein [marine gamma
           proteobacterium HTCC2207]
 gi|90331135|gb|EAS46391.1| radical activating enzyme family protein [marine gamma
           proteobacterium HTCC2207]
          Length = 216

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 87/232 (37%), Gaps = 55/232 (23%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE    G   VF R +GC L           +C +CDT +       G 
Sbjct: 6   LRITEIFHSLQGETSTVGLPTVFVRLTGCPL-----------RCGYCDTAYAF---EGGS 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           ++ +  +   +       +   +Y  +TGGEPL Q   + L++ L   G+ +++ET+G +
Sbjct: 52  KWTLSDILSTV------ADYGAKYVTVTGGEPLAQPQCIELLKQLCDLGYRVSLETSGAM 105

Query: 123 EPPQGIDWICVSPKA--GCDLKIKGGQEL-KLVFPQVN-VSPENYIGFDF---------- 168
                     V P+     DLK  G  E+ K ++  +  + P + + F            
Sbjct: 106 PVED------VDPRVFKIVDLKTPGSGEVSKNLYSNIEYLLPHDEVKFVICDRQDYDWSC 159

Query: 169 ------------ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                             P  G        LA          R+ +QTHK+I
Sbjct: 160 MKIDELGLQGRVAEILFSPSQGVLPPA--ELAKWMLHDKLNLRMQIQTHKYI 209


>gi|323212709|gb|EFZ97526.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
          Length = 121

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 55/134 (41%), Gaps = 32/134 (23%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
           Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3   YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSDRE 51

Query: 58  -----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
                      +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   
Sbjct: 52  VSLFSILAKTKESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLTDL 107

Query: 107 LNKRGFEIAVETNG 120
           L K GF   +ET+G
Sbjct: 108 LEKSGFSCQIETSG 121


>gi|312877003|ref|ZP_07736977.1| Radical SAM domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796234|gb|EFR12589.1| Radical SAM domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 225

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 94/225 (41%), Gaps = 41/225 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           +++ E F++++GEG  +G  AVF RF+GCNL            C +CDT +   +  +  
Sbjct: 14  FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------NCSWCDTRYAN-ENPQYE 61

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           + ++D L + I    I      +   LTGGEPL+Q  +  LI  L   GFE+ +ETNG++
Sbjct: 62  QVDIDTLLNFISSTGI------KRITLTGGEPLIQPYIYILIDRLIYEGFEVNIETNGSV 115

Query: 123 -------EPPQGIDWICVSPKAGCDLKIKGG------QELKLVFP--QVNVSPENYIGFD 167
                  +    +D+ C S      + +           LK V    +     E  I   
Sbjct: 116 SIKHVPRDAIITMDYKCPSSGMEDRMIVDNINFLGQKDVLKFVVGTYEDLKKAERIIKTF 175

Query: 168 FER--FSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
             R      P+ G          + +  +N     RL +Q HK I
Sbjct: 176 KPRCNIFFSPVFGKIEPR---EIVKFLLENELFDARLQLQLHKII 217


>gi|312134204|ref|YP_004001542.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           owensensis OL]
 gi|311774255|gb|ADQ03742.1| Radical SAM domain protein [Caldicellulosiruptor owensensis OL]
          Length = 224

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 93/225 (41%), Gaps = 41/225 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           +++ E F++++GEG  +G  AVF RF+GCNL            C +CDT +   +  K  
Sbjct: 13  FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------SCSWCDTKYA-TENPKYE 60

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           + ++D L   I    I      +   LTGGEPL+Q  +  LI  L   GFE+ +ETNG++
Sbjct: 61  QIDIDTLLSFIASSGI------KRVTLTGGEPLIQPYIYILIDRLIYEGFEVNIETNGSV 114

Query: 123 EP-------PQGIDWICVSPKAGCDLKIKGG------QELKLVFP--QVNVSPENYIGFD 167
                       +D+ C S      + +           LK V    +   S E  I   
Sbjct: 115 SIKHVPRNAIITMDYKCPSSGMEDRMIVDNIHFLGQKDVLKFVVGTYEDLKSAERIIKTF 174

Query: 168 FER--FSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
             R      P+ G          + +  +N     R+ +Q HK I
Sbjct: 175 KPRCNIFFSPVFGKIEP---AEIVKFLLENGLFDARVQLQLHKII 216


>gi|166712980|ref|ZP_02244187.1| radical activating enzyme [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 227

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 90/234 (38%), Gaps = 54/234 (23%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +    I EIFL+LQGE   AG   VF R +GC L           +C +CDT +      
Sbjct: 15  LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCVYCDTAYAFH--- 60

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
            G  +++D +   +    +      R+  +TGGEPL Q   + L+Q L   G+++++ET+
Sbjct: 61  GGEWHDIDDVLAEVATHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETS 114

Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVNVSPE-NYIGF------DFE 169
           G ++         V P+     D+K    G+E +  +  + +    + I F      D+E
Sbjct: 115 GALDVS------TVDPRVSRVVDIKTPASGEEARNRWENLPLLTARDQIKFVICSRADYE 168

Query: 170 ---------------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                               P           LA          R  +Q HK +
Sbjct: 169 WSREIVAAHALDRRCTVWFSPSKSEVGPR--QLADWIVADRLPVRFQMQLHKLL 220


>gi|82703824|ref|YP_413390.1| radical SAM family protein [Nitrosospira multiformis ATCC 25196]
 gi|82411889|gb|ABB75998.1| Radical SAM [Nitrosospira multiformis ATCC 25196]
          Length = 234

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 95/229 (41%), Gaps = 50/229 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + EIFL+LQGE    G   VF R +GC L           +C +CDT +   +G +  
Sbjct: 25  LRVNEIFLSLQGETSRVGLPTVFVRLTGCPL-----------RCGYCDTAYAFHEGER-- 71

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
                 LA ++ E         R+  +TGGEPL Q + + L++ L   G+ +++ET G +
Sbjct: 72  ----LSLAAILME---VARHGARHVTVTGGEPLAQKECLALLRLLCDAGYSVSMETGGAL 124

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF-----DFERFSL-- 173
           +  +    +        DLK  G  E+ K ++  V  ++  + + F     D  R+++  
Sbjct: 125 DISK----VDARVSRILDLKTPGSGEVEKNLWSNVQYLTSHDEVKFVLCDEDDYRWAVEM 180

Query: 174 --------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                          P+ G    E T LA          R+ VQ HK +
Sbjct: 181 MGKHRLDHTCPVLFSPVHGKL--EPTVLAEWILRDRLPVRMQVQLHKLL 227


>gi|254468966|ref|ZP_05082372.1| radical SAM domain protein [beta proteobacterium KB13]
 gi|207087776|gb|EDZ65059.1| radical SAM domain protein [beta proteobacterium KB13]
          Length = 212

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 89/231 (38%), Gaps = 49/231 (21%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    I EIF ++QGE    G+  VF R +GC +           +C +CDT +   +G 
Sbjct: 1   MSTLRINEIFYSIQGESSRIGKPTVFVRLTGCPM-----------RCTYCDTAYAFHEGQ 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119
           +     +              + +  Y  +TGGEPL Q + + L+  L + G+++++ET 
Sbjct: 50  QQEIEEI---------IQEIKQFDTNYVTVTGGEPLAQKNCIDLMNQLCELGYQVSLETG 100

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF----------PQVNVSPENYIGFD-- 167
           G ++    I  +    K   D+K     E K  F           ++    ++Y  F   
Sbjct: 101 GALD----IKDVHAKVKIILDVKTPKSNEDKNNFWPNLENIRTNDEIKFVIQDYEDFSWS 156

Query: 168 ---FERFSL-------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
               +++ L        P+       N  LA          RL VQ HK +
Sbjct: 157 MDIIKKYQLNQGQILFSPVYKVL--ANEQLAGWILKHQLNVRLQVQLHKIL 205


>gi|118602444|ref|YP_903659.1| radical SAM domain-containing protein [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|118567383|gb|ABL02188.1| Radical SAM domain protein [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 213

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 91/227 (40%), Gaps = 48/227 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
            +I EIF +LQGEG   G  +VF R +GC L           +C +CDT++         
Sbjct: 6   LNINEIFYSLQGEGREVGLPSVFIRLTGCPL-----------RCTYCDTEYAFKGN---N 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
              +D++   I++       +  Y  +TGGEPL Q +   L+  L K  +++++ET+G+I
Sbjct: 52  LMAIDEIIKKIKQ------YDTPYICVTGGEPLAQKNCCLLLNELVKNNYQVSLETSGSI 105

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLV----------FPQVNVSPENYIGFDFERFS 172
                I  + VS     D+K     E +              Q+     +   FD+    
Sbjct: 106 ----NIQDVNVSVSIVMDIKTPDSGEFEQNKYTNIKKLTTKDQLKFVIRSRADFDWSVAI 161

Query: 173 L-----------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           L            P+ G      T LA     Q    R+ +Q HK +
Sbjct: 162 LSQYPTAAGTLFSPVFGDITP--TQLADWILDQQLNVRMQLQLHKLL 206


>gi|307610772|emb|CBX00384.1| hypothetical protein LPW_21051 [Legionella pneumophila 130b]
          Length = 217

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 50/234 (21%)

Query: 1   MKLY----SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG 56
           MK +     I EIF +LQGE    G   VF R +GC L           +C++CDT +  
Sbjct: 1   MKRFNEQLRITEIFHSLQGESVTVGLPTVFVRLTGCPL-----------RCQYCDTAYAF 49

Query: 57  IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIA 115
              + G    +D + + +         + ++  +TGGEPL Q   +PL+  L   G+ ++
Sbjct: 50  ---SGGEVVEIDDILNKV------ASYQCQHVCVTGGEPLAQPGCIPLLSKLCDAGYSVS 100

Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF------- 166
           +ET+G  +    +D   +      DLK    +E  K +   ++ + P + I F       
Sbjct: 101 LETSGARDI-ASVDQRVM---IVMDLKTPDSREADKNLLSNLSFLKPTDQIKFVLCSRTD 156

Query: 167 ------------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                         ER  L           T+LA          R  +Q HK +
Sbjct: 157 YEWACSMLSEYQLAERVQLLFSPSWNQLNPTDLANWIIQDKLPVRFQLQLHKIL 210


>gi|319786288|ref|YP_004145763.1| radical SAM protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317464800|gb|ADV26532.1| Radical SAM domain protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 219

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/232 (24%), Positives = 89/232 (38%), Gaps = 56/232 (24%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIFL+LQGE   AG   VF R +GC L           +C++CDT +       G 
Sbjct: 10  LRITEIFLSLQGEANAAGWPTVFVRLTGCPL-----------RCQYCDTAYAFH---GGQ 55

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
            + +D +   +    +      R+  +TGGEPL Q   + L++ L   G ++++ET+G +
Sbjct: 56  WWEIDAILAEVARHGV------RHVCVTGGEPLAQKRCLDLLRRLCDAGHDVSLETSGAL 109

Query: 123 EPPQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLVFP-------QV 156
           +         V P+     DLK  G  E                 +K V           
Sbjct: 110 DIAG------VDPRVSRVVDLKTPGSAEMARNRLENIPLLTARDQVKFVLCGRADYEWAR 163

Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           ++  E+ +    +     P  G    E  +LA          R  +Q HK +
Sbjct: 164 DMVAEHGLSARCDVLF-SPSKGQL--EARDLADWIVADRLPVRFQMQLHKIL 212


>gi|116619443|ref|YP_821599.1| radical SAM domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116222605|gb|ABJ81314.1| Radical SAM domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 224

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 94/233 (40%), Gaps = 52/233 (22%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            I E+F ++QGEG   G  +VF R SGCNL           +C +CDT +   +  +G  
Sbjct: 2   KIAELFYSIQGEGALLGVPSVFIRTSGCNL-----------RCSWCDTPYTSWR-PEGTD 49

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
             ++Q+ D +      G    R+ V+TGGEP++  D+  L Q L  R   I +ET GT+ 
Sbjct: 50  LTLEQILDEV------GAHPARHVVVTGGEPMIAPDIVALTQRLRARNLHITIETAGTVF 103

Query: 124 PPQGIDWICVSPKAG-----------------------CDLKIKGGQELKLVFPQVNVSP 160
            P   D + +SPK                          +L  +   +LK V  Q     
Sbjct: 104 EPVACDLMSISPKLANSTPDDARFSRQHERLRIQTPVLAELMARYPYQLKFVISQPGDLE 163

Query: 161 E-----NYIGFDFERFSLQPMDGPFLEENTNLAI---SYCFQNPKWRLSVQTH 205
           E       +  D ER  L P +G         A+     C +   +R S + H
Sbjct: 164 EARSLVETLQADRERVILMP-EGVDPARLRERALWLAEICKE-EGFRFSPRLH 214


>gi|145635038|ref|ZP_01790744.1| predicted organic radical activating enzyme [Haemophilus influenzae
           PittAA]
 gi|145267646|gb|EDK07644.1| predicted organic radical activating enzyme [Haemophilus influenzae
           PittAA]
          Length = 181

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 90/203 (44%), Gaps = 35/203 (17%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
             +VF RF  CNL            C +CDT +   +     R++V Q+ + +       
Sbjct: 1   MPSVFVRFGKCNL-----------DCPWCDTPYNNFK-----RWSVSQILEKVRS----- 39

Query: 82  EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140
               +  ++TGGEP +   +  L++     G+ +A+ETNG    P  ID+I  SPK+   
Sbjct: 40  -FSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLKAIPAQIDYIATSPKSLYA 98

Query: 141 LK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP--MDGP--FLEENTNL-A 188
            K     I    E+++V      S    I      + + L P  +DG    LE  T L  
Sbjct: 99  HKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSPCEIDGKMNLLETITLLGQ 158

Query: 189 ISYCFQNPKWRLSVQTHKFIGIR 211
           ++     PKW+LS+QTHK IGI 
Sbjct: 159 LNQRSNKPKWQLSLQTHKLIGIE 181


>gi|325923406|ref|ZP_08185071.1| organic radical activating enzyme [Xanthomonas gardneri ATCC 19865]
 gi|325546121|gb|EGD17310.1| organic radical activating enzyme [Xanthomonas gardneri ATCC 19865]
          Length = 227

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/232 (24%), Positives = 85/232 (36%), Gaps = 50/232 (21%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +    I EIFL+LQGE   AG   VF R +GC L           +C +CDT +      
Sbjct: 15  LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCHYCDTAYAFH--- 60

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
            G  +++D +   +    +      R+  +TGGEPL Q   + L+Q L   GF++++ET+
Sbjct: 61  GGEWHDIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGFDVSLETS 114

Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLVF---PQVN 157
           G ++         V P+     D+K     E                 +K V        
Sbjct: 115 GALDVSA------VDPRVSRVVDIKTPASGEEQRNRWENLPLLTARDQIKFVICSRADYE 168

Query: 158 VSPENYIGFDFERFSLQPMDGPFLE-ENTNLAISYCFQNPKWRLSVQTHKFI 208
            S E       +R           E     LA          R  +Q HK +
Sbjct: 169 WSREIVAAHALDRRCTVWFSPSKSEVTPRELADWIVADRLPVRFQMQLHKLL 220


>gi|325929354|ref|ZP_08190484.1| organic radical activating enzyme [Xanthomonas perforans 91-118]
 gi|325540266|gb|EGD11878.1| organic radical activating enzyme [Xanthomonas perforans 91-118]
          Length = 227

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 90/234 (38%), Gaps = 54/234 (23%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +    I EIFL+LQGE   AG   VF R +GC L           +C +CDT +      
Sbjct: 15  LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAYAFH--- 60

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
            G  +++D +   +    +      R+  +TGGEPL Q   + L++ L   G+++++ET+
Sbjct: 61  GGQWHDIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETS 114

Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVNVSPE-NYIGF------DFE 169
           G ++         V P+     D+K    G+E +  +  + +    + I F      D+E
Sbjct: 115 GALDVSA------VDPRVSRVVDIKTPASGEEARNRWENLPLLTARDQIKFVICSRADYE 168

Query: 170 ---------------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                               P           LA          R  +Q HK +
Sbjct: 169 WSREIVAAHALDRRCTVWFSPSKSEVSPR--QLADWIVADRLPVRFQMQLHKLL 220


>gi|91776688|ref|YP_546444.1| radical SAM family protein [Methylobacillus flagellatus KT]
 gi|91710675|gb|ABE50603.1| Radical SAM [Methylobacillus flagellatus KT]
          Length = 212

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 84/227 (37%), Gaps = 43/227 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EIF +LQGE    G   VF R +GC +           +C +CDT++    G+  
Sbjct: 1   MLRIHEIFHSLQGESSRVGLPTVFVRLTGCPM-----------RCVYCDTEYAFKGGSN- 48

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
               +DQ+ + +           RY  +TGGEPL Q    + L++ L   G+E+++ET G
Sbjct: 49  --MTLDQIMEQV------ASYGARYVCVTGGEPLAQKKHCLELLRQLCDAGYEVSLETGG 100

Query: 121 TIEPPQG-------IDWICVSPKAGCD------LKIKGGQELKLV------FPQVNVSPE 161
            I            +D                  ++K   E+K+V      +        
Sbjct: 101 AIATDGVDERVAIILDIKTPDSGEVAKNHWDNLSRLKPNDEVKIVLCSRADYEWAKQLLA 160

Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
            +   +       P+       +  LA          R+ VQ HK +
Sbjct: 161 EHALNEKCAVIFSPVYSQVKPAD--LADWVLEDRLPVRMQVQLHKIL 205


>gi|294665414|ref|ZP_06730702.1| radical activating enzyme [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292604825|gb|EFF48188.1| radical activating enzyme [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 227

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 86/234 (36%), Gaps = 54/234 (23%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +    I EIFL+LQGE   AG   VF R +GC L           +C +CDT +      
Sbjct: 15  LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAYAFH--- 60

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
            G  +++D +   +    +      R+  +TGGEPL Q   + L++ L   G+++++ET+
Sbjct: 61  GGQWHDIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETS 114

Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLVF---PQVN 157
           G ++         V P+     D+K  G  E                 +K V        
Sbjct: 115 GALDVSA------VDPRVSRVVDIKTPGSGEEARNCWENLPLLTARDQIKFVICSRADYE 168

Query: 158 VSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
            S E       +R       P           LA          R  +Q HK +
Sbjct: 169 WSREIVAAHALDRRCTVWFSPSKSEVSPR--QLADWIVADRLPVRFQMQLHKLL 220


>gi|225874258|ref|YP_002755717.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196]
 gi|225791949|gb|ACO32039.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196]
          Length = 226

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 97/238 (40%), Gaps = 55/238 (23%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + EI+ ++QGE   AGR  +F R +GCNL           +C +CD+++     T G  
Sbjct: 2   RLIEIYKSVQGESSFAGRPCIFVRLAGCNL-----------RCSWCDSEYTF---TGGEA 47

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNG-- 120
           ++ D++   IE          R    TGGEPLLQ    +P ++ L   G+E+ +ET+G  
Sbjct: 48  FSDDEILARIEALAPV-----RLVEFTGGEPLLQAKQLIPFMERLLAAGYELMIETSGER 102

Query: 121 -TIEPPQG----IDWICVSPKAGCDLK--------IKGGQELKLVFPQ-------VNVSP 160
              E P      +D  C  P +G   K        +    E+K V               
Sbjct: 103 PLREVPAAVHKIVDVKC--PGSGEAGKFLMENLEFLTPRDEVKFVIADRADYEFAREFLR 160

Query: 161 ENYIGFDFERFSLQPMDG--PFLEENT-------NLAISYCFQN-PKWRLSVQTHKFI 208
            + +     +  L P     P  E +T        L + +  ++    RLS+Q HK+I
Sbjct: 161 AHALDRKAGQILLSPTFSKTPTPERSTSNATLDPRLLVEWMLEDGLPARLSLQIHKYI 218


>gi|167757163|ref|ZP_02429290.1| hypothetical protein CLORAM_02713 [Clostridium ramosum DSM 1402]
 gi|167703338|gb|EDS17917.1| hypothetical protein CLORAM_02713 [Clostridium ramosum DSM 1402]
          Length = 220

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 87/232 (37%), Gaps = 44/232 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y + E F+++ GEG  AG++A F RF  CNL            C +CDT +     +
Sbjct: 1   MNNYKVVEKFISINGEGSRAGQLAAFIRFHYCNL-----------NCSYCDTRYANDSNS 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
                +   + D ++   +          LTGGEPLLQ ++  LI  L K GF + +ETN
Sbjct: 50  NYELLSAQNILDYLKANKVV------NVTLTGGEPLLQQNIDYLIDLLLKNGFSVEIETN 103

Query: 120 GTIEPPQGID----WICVSPKAGCDLK-----------IKGGQELKLVFPQVNVSPENYI 164
           G+I+    I        +  K                 +     +K V   ++   +   
Sbjct: 104 GSIDIKPFIKETRPIFTLDYKVPSSTMENEMCLNNYQYLTKNDVVKFVVSNLSDLNKAKE 163

Query: 165 GFDF------ERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
             D        +    P+ G          + Y  ++      + +Q HKFI
Sbjct: 164 IIDTYDLVNRTKVYFSPVFGKIEPRM---IVDYMVKHHLNGINMQLQMHKFI 212


>gi|78048825|ref|YP_365000.1| putative radical activating enzyme [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037255|emb|CAJ25000.1| putative radical activating enzyme [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 227

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 90/234 (38%), Gaps = 54/234 (23%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +    I EIFL+LQGE   AG   VF R +GC L           +C +CDT +      
Sbjct: 15  LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAYAFH--- 60

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
            G  +++D +   +    +      R+  +TGGEPL Q   + L++ L   G+++++ET+
Sbjct: 61  GGQWHDIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETS 114

Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVNVSPE-NYIGF------DFE 169
           G ++         V P+     D+K    G+E +  +  + +    + I F      D+E
Sbjct: 115 GALDVSA------VDPRVSRVVDIKTPASGEEARNRWENLPLLTARDQIKFVICSRVDYE 168

Query: 170 ---------------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                               P           LA          R  +Q HK +
Sbjct: 169 WSREIVAAHTLDRRCTVWFSPSKSEVSPR--QLADWIVADRLPVRFQMQLHKLL 220


>gi|148244548|ref|YP_001219242.1| organic radical activating enzyme [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326375|dbj|BAF61518.1| organic radical activating enzyme [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 213

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 92/224 (41%), Gaps = 42/224 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
            +I EIF ++QGE    G  +VF R +GC L           +C +CDT++         
Sbjct: 6   LNINEIFYSIQGEAREVGLPSVFIRLTGCPL-----------KCTYCDTEYAFHGN---- 50

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
             N+ ++  +I E     + +  Y  +TGGEPLLQ +   L+  L +  +++++ET+G+I
Sbjct: 51  --NLMEIDAIISE---IKQYDTTYICVTGGEPLLQKNCYLLLDRLVENNYQVSLETSGSI 105

Query: 123 E-------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL-- 173
                       +D    S       K    ++L  V  Q+     ++  FD+    L  
Sbjct: 106 NIQDVNALVSIVMDVKTPSSGESEQNKYTNFKKL-TVKDQLKFVIGSHSDFDWSVAILNQ 164

Query: 174 ---------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                     P+ G      T LA     Q    RL +Q HK +
Sbjct: 165 YHTTAGVLFSPVFGNITP--TQLADWILDQQLNVRLQLQLHKLL 206


>gi|285019180|ref|YP_003376891.1| organic radical activating enzyme protein [Xanthomonas albilineans
           GPE PC73]
 gi|283474398|emb|CBA16899.1| putative organic radical activating enzyme protein [Xanthomonas
           albilineans]
          Length = 225

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 86/234 (36%), Gaps = 54/234 (23%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +    + EIFL+LQGE   AG   VF R +GC L           +C +CDT +      
Sbjct: 13  LPRLKLTEIFLSLQGEADSAGWPTVFVRLTGCPL-----------RCSYCDTAYAFH--- 58

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
            G  +++D +   +    +      R+  +TGGEPL Q   + L+Q+L   G+++++ET+
Sbjct: 59  GGQWWDIDAILAEVARHGV------RHVCVTGGEPLAQKRCLQLLQSLCDTGYDVSLETS 112

Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLV------FP 154
           G ++  +      V P+     D+K     E                 +K V      + 
Sbjct: 113 GALDIAE------VDPRVSRVLDIKTPASHEAQRNRWENLTLLTARDQIKFVLCGRADYE 166

Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                   +           P       +   LA          R  +Q HK +
Sbjct: 167 WARALVAEHQLQARCMVWFSP--SKSDLDARELADWIVADRLPVRFQMQLHKLL 218


>gi|225848024|ref|YP_002728187.1| organic radical activating enzyme [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644046|gb|ACN99096.1| organic radical activating enzyme [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 217

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 38/228 (16%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           + + + EIF T++GEG   G   VF R  GCNL           +C +CDT +       
Sbjct: 8   ETFKVVEIFRTVEGEGRWVGLPVVFIRLEGCNL-----------RCSWCDTTY----SYD 52

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           G  Y V  L ++++E         +   +TGGEP L  ++  L+++L    + + +ETNG
Sbjct: 53  GKTYTVKTLEEILKE---VSTYNLKRVCITGGEPFLTSNLDILVKSLLDEDYYVFIETNG 109

Query: 121 TIEPPQGID------WICVSPKAGCDLK----IKGGQELKLVFPQVNVSPENYIGFDF-- 168
           T+   +  D      +I  SPK          I   +ELK V  + N+S  + I  DF  
Sbjct: 110 TLWNERFKDLNLDRLYITCSPKPPFYFVNKDLIPYIKELKFVVDE-NLSLNHIIKPDFID 168

Query: 169 ----ERFSLQPMDGP--FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               +   LQP       +++  NL         + R+  Q HK +G+
Sbjct: 169 IIKSDIIVLQPESNKPEMVKKALNLQDQLLQLGIESRIIPQCHKVLGL 216


>gi|257095755|ref|YP_003169396.1| Radical SAM domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048279|gb|ACV37467.1| Radical SAM domain protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 219

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 83/229 (36%), Gaps = 50/229 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIFL+LQGE    G   VF R +GC L           +C +CDT +    G    
Sbjct: 10  LKISEIFLSLQGETSRVGLPTVFVRLTGCPL-----------RCVWCDTAYAFAGG---- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
                 L D++ E       + R+  +TGGEPL Q   + L+  L   G+ +++ET+G +
Sbjct: 55  --RTMTLPDILAE---VARHDVRHVCVTGGEPLAQPACLALLSELCDTGYAVSLETSGAL 109

Query: 123 EPPQGIDWICVSPKAGCDLKIKG-----------------GQELKLV------FPQVNVS 159
           +   G+D          DLK  G                 G E+K V      +      
Sbjct: 110 DI-GGVDQRVA---RIVDLKAPGSGESDRNLWANLSLLNSGDEIKFVLAHRADYEWARQV 165

Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                  D       P+ G      + LA          R  +Q HK +
Sbjct: 166 IVERRLADVCPLLFSPVAGEL--AASTLAEWILADRLPVRFQLQLHKVL 212


>gi|288559696|ref|YP_003423182.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE
           [Methanobrevibacter ruminantium M1]
 gi|288542406|gb|ADC46290.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE
           [Methanobrevibacter ruminantium M1]
          Length = 202

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 95/223 (42%), Gaps = 33/223 (14%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    + EIF + QGEG + G  A F R  GCNL            C +CDTD    +  
Sbjct: 1   MIKIKVSEIFTSFQGEGPYIGTPATFLRLYGCNL-----------NCPWCDTDISTYE-- 47

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVET 118
                +VD++ +++  Q        R  V+TGGEP LQ      LI+ +     +I +ET
Sbjct: 48  ---ILSVDEVFEILMTQ--MEFNNIRILVITGGEPTLQMEELKRLIKEIPDE-IKIQIET 101

Query: 119 NGTI-EPPQGIDWICVSPKAGCDLKIKGGQELKLVF------PQVNVSPENYIGFDF--- 168
           NG+I E    ID++ +SPK   +   K   +   VF       Q ++    Y+   +   
Sbjct: 102 NGSIFEYVPEIDYV-ISPKEDKETVFKNYYKYDNVFFKFVICSQEDIDEVIYLKDKYNYD 160

Query: 169 ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           +   LQ       E   +L           +LSVQTHK++  R
Sbjct: 161 KTIWLQGEFSKDGEMA-DLIRENFPHLENVKLSVQTHKYLNQR 202


>gi|308273462|emb|CBX30064.1| hypothetical protein N47_D28730 [uncultured Desulfobacterium sp.]
          Length = 219

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 90/231 (38%), Gaps = 48/231 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M L  I EIF ++QGE  ++G    F R +GCNL           +C +CDT +   +G+
Sbjct: 6   MTLL-INEIFYSIQGESLYSGLPCAFIRLAGCNL-----------RCAYCDTKYAYNEGS 53

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
                  D L   I E             +TGGEPL+Q + P LI+ L    F + +ETN
Sbjct: 54  ---EIETDHLVKKISEFG------CPLVEITGGEPLIQEETPVLIEKLLDNKFSVLLETN 104

Query: 120 GTIEPP-------QGIDWICVSPKAGCDLK--------IKGGQELKLVFPQV-------N 157
           G+++         + ID  C  P +G   K        +    ++K V           +
Sbjct: 105 GSLDISYIDKRCIKIIDIKC--PTSGESEKNNLANINRLNQKDQIKFVIGNRVDYEFAKD 162

Query: 158 VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           +  +    F  E     P+      E + LA          R  +Q HK I
Sbjct: 163 IVKQIPKTFFRENILFSPIYNKL--ELSELARWMLKDKLTVRFHLQLHKII 211


>gi|84623212|ref|YP_450584.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84367152|dbj|BAE68310.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 227

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 90/234 (38%), Gaps = 54/234 (23%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +    I EIFL+LQGE   AG   VF R +GC L           +C +CDT +      
Sbjct: 15  LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCVYCDTAYAFH--- 60

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
            G  +++D +   +    +      R+  +TGGEPL Q   + L+Q L   G+++++ET+
Sbjct: 61  GGEWHDIDDVLAEVATHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETS 114

Query: 120 GTIEPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVNVSPE-NYIGF------DFE 169
           G ++         V P+     D+K    G+E +  +  + +    + I F      D+E
Sbjct: 115 GALDVSA------VDPRVSRVVDIKTPASGEEARNRWENLLLLTARDQIKFVICSRADYE 168

Query: 170 ---------------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                               P           LA          R  +Q HK +
Sbjct: 169 WSREIVAAHALDRRCTVWFSPSKSEVGPR--QLADWIVADRLPVRFQMQLHKLL 220


>gi|71275793|ref|ZP_00652077.1| Radical SAM [Xylella fastidiosa Dixon]
 gi|71900392|ref|ZP_00682525.1| Radical SAM [Xylella fastidiosa Ann-1]
 gi|170730227|ref|YP_001775660.1| radical activating enzyme [Xylella fastidiosa M12]
 gi|71163371|gb|EAO13089.1| Radical SAM [Xylella fastidiosa Dixon]
 gi|71729824|gb|EAO31922.1| Radical SAM [Xylella fastidiosa Ann-1]
 gi|167965020|gb|ACA12030.1| radical activating enzyme [Xylella fastidiosa M12]
          Length = 217

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 95/227 (41%), Gaps = 46/227 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIFL+LQGE    G   VF R +GC L           +C++CDT +       G 
Sbjct: 8   LKISEIFLSLQGEANSVGWPTVFVRLTGCPL-----------RCQYCDTSYAFH---GGE 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
             ++D + + +    +      R+  +TGGEPL Q   + L++ L   GFE+++ET+G +
Sbjct: 54  WRSIDTIVNEVRSYGV------RHVCVTGGEPLAQKRCLLLLEKLCDAGFEVSLETSGAL 107

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF-------------- 166
           +    +D   VS     D+K  G  E  +  +P +  ++P + I F              
Sbjct: 108 DI-AAVD-SRVS--RVVDIKTPGSGEAHRNHWPNLTLLTPHDQIKFVLCSRVDYEWARTC 163

Query: 167 ----DFERFSLQPMDGPFLEEN-TNLAISYCFQNPKWRLSVQTHKFI 208
               + ER  +        +   T LA        + R  +Q HK +
Sbjct: 164 VAEHELERRCMVWFSPSKQDIAPTVLADWIISDRLEVRFQLQLHKLL 210


>gi|289207754|ref|YP_003459820.1| radical SAM protein [Thioalkalivibrio sp. K90mix]
 gi|288943385|gb|ADC71084.1| Radical SAM domain protein [Thioalkalivibrio sp. K90mix]
          Length = 232

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 85/230 (36%), Gaps = 54/230 (23%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            I E+F++LQGE   +G    F R +GC L           +CR+CD+ +       G  
Sbjct: 24  RITEMFVSLQGEAADSGWPTAFVRLTGCPL-----------RCRWCDSAYAF---EGGEA 69

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
             +D +   + +  +      R+  +TGGEPL Q     L+  L   G+ +++ET+G ++
Sbjct: 70  RALDSILAWVGQTGV------RHVCVTGGEPLAQPGCRELLARLCDDGYRVSLETSGALD 123

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQE-----------------LKLVFPQVNVSPENYIGF 166
                  + V      D K  G  E                 LK V    N +  ++   
Sbjct: 124 IGGLDARVTV----VMDWKAPGSGEQDRNLEANIAHLAAGDQLKFVL--ANRADFDWACA 177

Query: 167 DFERFSL--------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           +  R  L         P+ G        LA     +    R  +Q HK +
Sbjct: 178 ELGRLDLAPGVEVLFSPVFGELAPR--ELADWIVAERLAVRFQLQLHKLL 225


>gi|21232445|ref|NP_638362.1| radical activating enzyme [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767472|ref|YP_242234.1| radical activating enzyme [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21114226|gb|AAM42286.1| radical activating enzyme [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572804|gb|AAY48214.1| radical activating enzyme [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 227

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 86/230 (37%), Gaps = 46/230 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +    I EIFL+LQGE   AG   VF R +GC L           +C +CDT +      
Sbjct: 15  LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCTYCDTAYAFH--- 60

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
            G  +++D +   +    +      R+  +TGGEPL Q   + L+  L   GF++++ET+
Sbjct: 61  GGEWHDIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLALLHKLCDAGFDVSLETS 114

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQE----------LKLVFPQVNVSPENYIGFDFE 169
           G ++       +        D+K     E          L     Q+     +   +++ 
Sbjct: 115 GALDVSA----VDARVSRVVDIKTPASGEDHRNRWDNLPLLTARDQIKFVICSRADYEWS 170

Query: 170 R--FSLQPMDG---------PFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           R   + Q +D                  LA          R  +Q HK +
Sbjct: 171 RDVVATQALDRRCTVWFSPSKGQVSARELADWIVADRLPVRFQMQLHKIL 220


>gi|254787332|ref|YP_003074761.1| radical SAM domain-containing protein [Teredinibacter turnerae
           T7901]
 gi|237685298|gb|ACR12562.1| radical SAM domain protein [Teredinibacter turnerae T7901]
          Length = 214

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 88/229 (38%), Gaps = 47/229 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    I EIF +LQGE    G   VF R +GC L           +C++CD+++    G 
Sbjct: 1   MTDLRITEIFHSLQGEARTVGVPTVFVRLTGCPL-----------RCQYCDSEYAFFGGE 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119
           K    ++D++  L+            +  +TGGEPL Q + +PL++ L   G  +++ET+
Sbjct: 50  KK---SLDEIEALVI------GFRCSHVCVTGGEPLAQPNCIPLLERLCDAGLAVSLETS 100

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF----------PQVNVSPENYIGFDFE 169
           G ++       + +      DLK     E                Q+     +   +++ 
Sbjct: 101 GAMDISAVDTRVSI----VLDLKTPDSGERDKNLLSNIPLLAAKDQIKFVICSRSDYEWA 156

Query: 170 RFSLQPM-------DGPFLEENTNLA----ISYCF-QNPKWRLSVQTHK 206
           RF L          D  F    T LA      +        R  +Q HK
Sbjct: 157 RFMLDEQQLVGRVGDIFFSPSYTQLAPAELAQWILDDRLPVRFQMQLHK 205


>gi|219850957|ref|YP_002465389.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
 gi|219545216|gb|ACL15666.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
          Length = 202

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 93/226 (41%), Gaps = 44/226 (19%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            I EIFL+LQGEG + G+  +F R SGCNL            C +CDT +     T G  
Sbjct: 2   KISEIFLSLQGEGVYQGKACIFIRLSGCNL-----------SCSWCDTRYA---CTLGEE 47

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGE--PLLQVDVPLIQALNKRGFEIAVETNGTI 122
              +Q+ + + E+            +TGGE        +PL++AL  RG+ + +ETNGTI
Sbjct: 48  MTTEQVLERVSEE------NCSLICITGGEPLLQQDQLLPLLKALEDRGYIVGIETNGTI 101

Query: 123 E-------PPQGIDWICVSPKAGCDL----KIKGGQELKLVFPQVNVSPENYIGFDFERF 171
           +           +D  C S     DL     I+    +K V     V  +    +     
Sbjct: 102 DFIASGEYASICMDVKCPSSGETSDLSLLEHIRVTDSVKFV-----VKDQQDCAYAESVI 156

Query: 172 SLQPMDGP------FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
              P+ G       F  E T LA     ++      +Q HK IG++
Sbjct: 157 RDHPIKGTIFFSPVFGSEYTALASFVLTRHLPVTFQMQLHKIIGVK 202


>gi|197122965|ref|YP_002134916.1| radical SAM protein [Anaeromyxobacter sp. K]
 gi|196172814|gb|ACG73787.1| Radical SAM domain protein [Anaeromyxobacter sp. K]
          Length = 210

 Score =  151 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 99/228 (43%), Gaps = 51/228 (22%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + EIF ++QGEG  AGR  VF RF+GC+L           +C +CDT +    G    R
Sbjct: 2   RVTEIFFSIQGEGSRAGRPCVFVRFTGCDL-----------RCGYCDTAYAFHGGADMDR 50

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
                 A ++ E         R+  LTGGEP+LQ ++P L + L  RG+E+AVET+G   
Sbjct: 51  ------AAILAE---VARHPARFVCLTGGEPMLQRELPDLARDLVARGYEVAVETHGQRP 101

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENYIGF------DFE------- 169
               +D +        D+K  G  E+   F  ++ + P + + F      DF        
Sbjct: 102 ----LDALPAEAIRVVDVKTPGSGEVTTDFAYLDRLQPHDEVKFVVCSEDDFRWSREVVR 157

Query: 170 --------RFSLQPMDGPFLEENTNLAISYCFQN-PKWRLSVQTHKFI 208
                   +  L P  G     +    + +  ++    RLS+Q HK I
Sbjct: 158 RHALEGRVQVLLSPAWGQVAPRDL---VRWMLESGLDARLSLQVHKVI 202


>gi|148359615|ref|YP_001250822.1| radical activating enzyme [Legionella pneumophila str. Corby]
 gi|296107657|ref|YP_003619358.1| Organic radical activating enzyme [Legionella pneumophila 2300/99
           Alcoy]
 gi|148281388|gb|ABQ55476.1| radical activating enzyme [Legionella pneumophila str. Corby]
 gi|295649559|gb|ADG25406.1| Organic radical activating enzyme [Legionella pneumophila 2300/99
           Alcoy]
          Length = 217

 Score =  151 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 90/234 (38%), Gaps = 50/234 (21%)

Query: 1   MKLY----SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG 56
           MK +     I EIF +LQGE    G   VF R +GC L           +C++CDT +  
Sbjct: 1   MKRFNEQLRITEIFHSLQGESVTVGLPTVFVRLTGCPL-----------RCQYCDTAYAF 49

Query: 57  IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIA 115
              + G    +D + + +         + ++  +TGGEPL Q   +PL+  L   G+ ++
Sbjct: 50  ---SGGEVVEIDDILNKV------ASYQCQHVCVTGGEPLAQPGCIPLLSKLCDAGYSVS 100

Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF------- 166
           +ET+G  +    +D   +      DLK    +E  K +   ++ + P + I F       
Sbjct: 101 LETSGARDI-ASVDQRVM---IVMDLKTPDSREADKNLLSNLSFLKPTDQIKFVLCSRND 156

Query: 167 ------------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                         ER  L            +LA          R  +Q HK +
Sbjct: 157 YEWACSMLSEYQLAERVQLLFSPSWNQLNPADLANWIIQDKLPVRFQLQLHKIL 210


>gi|297539673|ref|YP_003675442.1| Radical SAM domain-containing protein [Methylotenera sp. 301]
 gi|297259020|gb|ADI30865.1| Radical SAM domain protein [Methylotenera sp. 301]
          Length = 212

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 56/232 (24%), Positives = 92/232 (39%), Gaps = 51/232 (21%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MKL  + EIF ++QGE    G   VF R +GC +           +C +CDT +    G+
Sbjct: 1   MKL-KVHEIFYSIQGESSRVGLPTVFVRLTGCPM-----------RCVYCDTAYAFSGGS 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
                   ++AD++ +     E   +Y  +TGGEPL Q D   L++ L   G+ +++ET 
Sbjct: 49  N------IEIADILAK---VAEFGTKYVTVTGGEPLAQKDCHFLLKDLCDAGYSVSLETG 99

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELK-LVFPQVN-VSPENYIGF----------- 166
           G I+       + V      D+K     ELK  V+  ++ +   + + F           
Sbjct: 100 GAIDISPVDKRVSV----ILDVKTPDSGELKNNVWSNLDHLKSSDEVKFVLCSREDYQWA 155

Query: 167 ----------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                     +       P+        T+LA          R+ VQ HK +
Sbjct: 156 RDLLSTHKIAEKCPVLFSPVYSQVSP--TDLAEWVLADKLPVRMQVQLHKIL 205


>gi|145641210|ref|ZP_01796790.1| predicted methyltransferase [Haemophilus influenzae R3021]
 gi|145274047|gb|EDK13913.1| predicted methyltransferase [Haemophilus influenzae 22.4-21]
          Length = 181

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 90/203 (44%), Gaps = 35/203 (17%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
             +VF RF  CNL            C +CDT +   +     R++V Q+ + +       
Sbjct: 1   MPSVFVRFGKCNL-----------DCPWCDTPYNNFK-----RWSVSQILEKV------W 38

Query: 82  EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140
               +  ++TGGEP +   +  L++     G+ +A+ETNG    P  ID+I  SPK+   
Sbjct: 39  SFSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLKAIPAQIDYIATSPKSLYA 98

Query: 141 LK-----IKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP--MDGP--FLEENTNL-A 188
            K     I    E+++V      S    I      + + L P  +DG    LE  T L  
Sbjct: 99  HKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSPCEIDGKMNLLETITLLGQ 158

Query: 189 ISYCFQNPKWRLSVQTHKFIGIR 211
           ++     PKW+LS+QTHK IGI 
Sbjct: 159 LNQRSNKPKWQLSLQTHKLIGIE 181


>gi|225850855|ref|YP_002731089.1| radical SAM domain protein [Persephonella marina EX-H1]
 gi|225645393|gb|ACO03579.1| radical SAM domain protein [Persephonella marina EX-H1]
          Length = 214

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 96/231 (41%), Gaps = 39/231 (16%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M+ +++ EIF +++GEG   G    F R  GCNL           +C +CDT +    G 
Sbjct: 1   MEKFNVVEIFPSIEGEGSLIGYPVTFIRLEGCNL-----------RCEWCDTPYS-YDGK 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
              +   D++   ++          R   LTGGEPL+  +V  L+  + K G+ + +ETN
Sbjct: 49  TFSKLTSDEIISELKR------YPNRKVCLTGGEPLICENVDKLMTEIIKEGYSLIIETN 102

Query: 120 GTIEPPQGID---------WICVSPKAGC-----DLKIKGGQELKLVFPQVNVSPEN--- 162
           GT+   +  +         +I VSPK           I    E K +  +     +    
Sbjct: 103 GTVLTEEVKNVLREFGESIYIVVSPKPDSFYFINKELIPSVDEFKFIVDETLRIKDILMY 162

Query: 163 YIGFDFERFSLQPMDG--PFLEENTNLAISYCFQNP-KWRLSVQTHKFIGI 210
            I +  +   LQP       +++   L      ++  + R+  Q HK++GI
Sbjct: 163 QIYYTEKPLILQPESNRKDMIDKALKLQRELLEKHSIEARVIPQVHKYMGI 213


>gi|237735749|ref|ZP_04566230.1| radical SAM-superfamily protein [Mollicutes bacterium D7]
 gi|229381494|gb|EEO31585.1| radical SAM-superfamily protein [Coprobacillus sp. D7]
          Length = 220

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 87/232 (37%), Gaps = 44/232 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y + E F+++ GEG  AG++A F RF  CNL            C +CDT +     +
Sbjct: 1   MNNYKVVEKFISINGEGSRAGQLAAFIRFHYCNL-----------NCSYCDTRYANDSNS 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
                +   + D ++   +          LTGGEPLLQ ++  LI  L K GF + +ETN
Sbjct: 50  NYELLSAQNILDYLKTNKVV------NVTLTGGEPLLQQNIDYLIDLLLKNGFSVEIETN 103

Query: 120 GTIEPPQGID----WICVSPKAGCDLK-----------IKGGQELKLVFPQVNVSPENYI 164
           G+I+    I        +  K                 +     +K V   ++   +   
Sbjct: 104 GSIDIKPFIKETRPIFTLDYKVPSSTMENEMCLNNYQYLTKNDVVKFVVSNLSDLNKAKE 163

Query: 165 GFDF------ERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
             D        +    P+ G          + Y  ++      + +Q HKFI
Sbjct: 164 IIDTYDLVNRTKVYFSPVFGKIEPRM---IVDYMVKHHLNGINMQLQMHKFI 212


>gi|118443804|ref|YP_878458.1| MoaA family Fe-S oxidoreductase [Clostridium novyi NT]
 gi|118134260|gb|ABK61304.1| Fe-S oxidoreductase of MoaA family CAC3625 [Clostridium novyi NT]
          Length = 222

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 87/232 (37%), Gaps = 47/232 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y + E F+++ GEG  +G+++VF RF+GCNL            C +CDT +   +     
Sbjct: 3   YKVVEKFISINGEGKSSGQLSVFIRFAGCNL-----------NCSYCDTKWANEEKAPYS 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALN-KRGFEIAVETNGT 121
                ++ + I+        E +   LTGGEPLLQ   + L++ L       I +ETNG+
Sbjct: 52  IMTEKEIYEYIK------LTEIKNVTLTGGEPLLQEGILTLLKLLCSDENLNIEIETNGS 105

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGG-----------------QELKLVFPQVNVSPE--- 161
           I            PK   D K+                      +K V    N   +   
Sbjct: 106 IPLKDFTSIKNNPPKFTMDYKLPYSNMENHMITDNFNYLTKKDVIKFVVANKNDLQKLKS 165

Query: 162 ---NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
               Y   D     + P+ G     +    + +  +N      L +Q HK I
Sbjct: 166 IIYKYNLIDKTNIYISPVYGEIEMNS---IVEFMKENKLNGVTLQMQLHKII 214


>gi|254282112|ref|ZP_04957080.1| radical SAM domain protein [gamma proteobacterium NOR51-B]
 gi|219678315|gb|EED34664.1| radical SAM domain protein [gamma proteobacterium NOR51-B]
          Length = 217

 Score =  150 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 87/232 (37%), Gaps = 51/232 (21%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
               I EIF +LQGE    G   VF R +GC L           +C +CDT +     + 
Sbjct: 5   TTLRITEIFHSLQGEARTVGLPTVFVRLTGCPL-----------RCVYCDTAYAF---SG 50

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           G    +D + + +               +TGGEPL Q + + L+ AL  RG+++++ET+G
Sbjct: 51  GELTTLDDILERV------AGFSCTRVCVTGGEPLAQPECLSLLTALCDRGYDVSLETSG 104

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQV-NVSPENYIGF--------DFER 170
            +        +        DLK     E  +  +  +  ++P + I F        ++ R
Sbjct: 105 AMPIAGADTRVS----RVLDLKTPDSGECHRNDWSNIEQLTPHDQIKFVVCSRTDYEWAR 160

Query: 171 FSL--------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           F L               P  G        LA          RL +Q HK +
Sbjct: 161 FKLDEFKLPTRVSDVLFSPSYGVVEPA--ELAQWLLDDRLAARLQLQLHKLL 210


>gi|302035630|ref|YP_003795952.1| putative radical-activating enzyme, radical SAM superfamily
           [Candidatus Nitrospira defluvii]
 gi|300603694|emb|CBK40025.1| putative Radical-activating enzyme, radical SAM superfamily
           [Candidatus Nitrospira defluvii]
          Length = 212

 Score =  150 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 83/227 (36%), Gaps = 44/227 (19%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + EIF ++QGE  +AGR  VF R +GC L           +C +CDT +       G
Sbjct: 1   MVKVTEIFHSIQGESTYAGRPCVFVRLTGCPL-----------RCTWCDTAYAFY---GG 46

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGT 121
               +D + + +               +TGGEPL Q   +PL+  L   GFE+ VET+G 
Sbjct: 47  RDLTIDDIVNQVRA------FSCDLVEVTGGEPLSQPASLPLLTRLCDEGFEVLVETSGA 100

Query: 122 IEPPQGID---WICVSPKAGCDLKIKGG-----------QELKLV------FPQVNVSPE 161
           IE   G+D    + +  K                      E+K V      +        
Sbjct: 101 IE-TIGVDRRVHVILDVKCPGSGMTDRMCWSNLDRLAPQDEVKFVIKDRVDYEWAREVLH 159

Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
            +         + P+ G        LA          R  +Q HKFI
Sbjct: 160 RHELPGRCTVLMSPVFGEVEVRY--LAEWILADKLPVRFQLQMHKFI 204


>gi|188996510|ref|YP_001930761.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931577|gb|ACD66207.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 220

 Score =  150 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 36/227 (15%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           + + + EIF +++GEG   G   VF R  GCNL           +C +CDT +       
Sbjct: 11  ETFKVVEIFRSVEGEGRWVGLPVVFIRLEGCNL-----------RCSWCDTPYSYT---- 55

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           G  + +  ++D++EE     +   +   +TGGEP    ++  L+  L +  +++ +ETNG
Sbjct: 56  GENFKLLSISDILEE---IKKYNLKRVCITGGEPFFTENLDILVGNLIENNYQVFIETNG 112

Query: 121 TIE--PPQGID----WICVSPKAG----CDLKIKGGQELKLVFPQV-----NVSPENYIG 165
           T+     + +D    +I  SPK          +    E K V  +       + P+    
Sbjct: 113 TLWNQNFENLDKSKIYITCSPKPPFYFINKNLLPYISEFKFVVDETLDVKHIIRPDLTEY 172

Query: 166 FDFERFSLQPMDGP--FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              +   LQP       + +   L         + R+  Q HK +G+
Sbjct: 173 IKNDVIVLQPESNKPEMVNKALKLQDELLKFGIESRIIPQCHKVLGL 219


>gi|148652703|ref|YP_001279796.1| radical SAM domain-containing protein [Psychrobacter sp. PRwf-1]
 gi|148571787|gb|ABQ93846.1| Radical SAM domain protein [Psychrobacter sp. PRwf-1]
          Length = 245

 Score =  150 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 90/240 (37%), Gaps = 57/240 (23%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + EIF +LQGE   AG   VF R +GC L           +C +CDT +     T G 
Sbjct: 21  LRMTEIFYSLQGEALTAGLPTVFVRLTGCPL-----------RCVYCDTTYSF---TGGE 66

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R +++ +   I +         +   LTGGEPL Q + +PL+Q L   G+EI++ET G +
Sbjct: 67  RLSLEAIMADIAQ------YPCKRICLTGGEPLAQPNAIPLMQRLLDEGYEISLETAGAL 120

Query: 123 ---EPPQGI----DWICVSPKAGCD------LKIKGGQELKLVFPQVNVSPENYIGFDFE 169
              + P  +    D    S              +    +LK V   +N S  ++      
Sbjct: 121 SVADVPAAVSKVMDIKTPSSGESDKNLWSNLEYLTQHDQLKFVI--MNRSDYDWSKQKLA 178

Query: 170 RFSL---------QPMDGPFLEE------------NTNLAISYCFQNPKWRLSVQTHKFI 208
            ++L          PM     +                LA          RL +Q HK I
Sbjct: 179 EYNLDKVVGTVWFSPMFNVHDDAQGDVAAVDVPNLARELAEWILADALPVRLQLQLHKII 238


>gi|21243865|ref|NP_643447.1| radical activating enzyme [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109466|gb|AAM37983.1| radical activating enzyme [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 227

 Score =  150 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 88/232 (37%), Gaps = 50/232 (21%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +    I EIFL+LQGE   AG   VF R +GC L           +C +CDT +      
Sbjct: 15  LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCHYCDTAYAFH--- 60

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
            G  +++D +   +    +      R+  +TGGEPL Q   + L+Q L   GF++++ET+
Sbjct: 61  GGQWHDIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGFDVSLETS 114

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIK-GGQELKLVFPQVNVSPE-NYIGF------DFE-- 169
           G ++       +        D+K    G+E +  +  + +    + I F      D+E  
Sbjct: 115 GALDVSAVDSRVS----RVVDIKTPASGEEARNRWENLPLLTARDQIKFVICSRADYEWS 170

Query: 170 -------------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                             P           LA          R  +Q HK +
Sbjct: 171 REIVAAHALDRRCTVWFSPSKSEVSPR--QLADWIVADRLPVRFQMQLHKLL 220


>gi|325914192|ref|ZP_08176545.1| organic radical activating enzyme [Xanthomonas vesicatoria ATCC
           35937]
 gi|325539695|gb|EGD11338.1| organic radical activating enzyme [Xanthomonas vesicatoria ATCC
           35937]
          Length = 227

 Score =  150 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 90/232 (38%), Gaps = 50/232 (21%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +    I EIFL+LQGE   AG   VF R +GC L           +C +CDT +      
Sbjct: 15  LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCNYCDTAYAFH--- 60

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
            G  +++D +   +    +      R+  +TGGEPL Q   + L+Q L   GF++++ET+
Sbjct: 61  GGQWHDIDAIVAEVASHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGFDVSLETS 114

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIK-GGQELKLVFPQVNVSPE-NYIGF------DFE-- 169
           G ++  +    +        D+K    G+E +  +  + +    + I F      D+E  
Sbjct: 115 GALDVSEVDTRVS----RVVDIKTPASGEEQRNRWDNLALLTARDQIKFVICSRADYEWS 170

Query: 170 -------------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                             P  G        LA          R  +Q HK +
Sbjct: 171 RGIVAAHALERRCTVWFSPSKGEVPPR--QLADWIVSDRLPVRFQMQLHKIL 220


>gi|70607340|ref|YP_256210.1| hypothetical protein Saci_1604 [Sulfolobus acidocaldarius DSM 639]
 gi|68567988|gb|AAY80917.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
          Length = 211

 Score =  150 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 97/231 (41%), Gaps = 40/231 (17%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK Y I EIF ++QGEG   G  + F R +GC++           +C +CDT +   +  
Sbjct: 1   MK-YWIIEIFTSIQGEGEVIGTPSNFVRLAGCHM-----------RCIWCDTKYSWHK-Y 47

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
            G   ++ ++   I           +   +TGGEPLLQ  +PL + L K    I VET+G
Sbjct: 48  DGKELSIQEIISKIN-------VSVKTTTITGGEPLLQDIIPLAEELKKLEQRIVVETSG 100

Query: 121 TIEPPQG----IDWICVSPK---AGCDLKIKGGQEL-----KLVFPQVNVSPENYIGF-- 166
           TI+P Q     +D   VSPK   AG  LK     +      K V           I F  
Sbjct: 101 TIKPNQKLMELVDVFSVSPKLSNAGYRLKYNFKDDDWATYYKFVIVNPKTDIPEVIKFVE 160

Query: 167 ----DFERFSLQP--MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               D  +  LQP      ++     LA S      ++R+  Q H+ I  R
Sbjct: 161 ENRIDHRKVLLQPDGRRNDYVNALKELADSVMEFGVQFRVLPQLHRIISYR 211


>gi|52842258|ref|YP_096057.1| radical activating enzyme [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629369|gb|AAU28110.1| radical activating enzyme [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 217

 Score =  150 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 90/234 (38%), Gaps = 50/234 (21%)

Query: 1   MKLY----SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG 56
           MK +     I EIF +LQGE    G   VF R +GC L           +C++CDT +  
Sbjct: 1   MKRFNEQLRITEIFHSLQGESVTVGLPTVFVRLTGCPL-----------RCQYCDTAYAF 49

Query: 57  IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIA 115
              + G    +D + + +         + ++  +TGGEPL Q   + L+  L   G+ ++
Sbjct: 50  ---SGGEVVEIDDILNKV------ASYQCQHVCVTGGEPLAQPGCILLLSKLCDAGYSVS 100

Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF------- 166
           +ET+G  +    +D   +      DLK    +E  K +   ++ + P + I F       
Sbjct: 101 LETSGARDI-ASVDQRVM---IVMDLKTPDSREADKNLLSNLSFLKPTDQIKFVLCSRTD 156

Query: 167 ------------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                         ER  L           TNLA          R  +Q HK +
Sbjct: 157 YEWACSMLSEYQLAERVQLLFSPSWNQLNPTNLANWIIQDKLPVRFQLQLHKIL 210


>gi|58581294|ref|YP_200310.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58425888|gb|AAW74925.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 210

 Score =  150 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 89/230 (38%), Gaps = 54/230 (23%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            I EIFL+LQGE   AG   VF R +GC L           +C +CDT +       G  
Sbjct: 2   KITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCVYCDTAYAFH---GGEW 47

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
           +++D +   +    +      R+  +TGGEPL Q   + L+Q L   G+++++ET+G ++
Sbjct: 48  HDIDDVLAEVATHGV------RHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETSGALD 101

Query: 124 PPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVNVSPE-NYIGF------DFE---- 169
                    V P+     D+K    G+E +  +  + +    + I F      D+E    
Sbjct: 102 VSA------VDPRVSRVVDIKTPASGEEARNRWENLLLLTARDQIKFVICSRADYEWSRE 155

Query: 170 -----------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                           P           LA          R  +Q HK +
Sbjct: 156 IVAAHALDRRCTVWFSPSKSEVGPR--QLADWIVADRLPVRFQMQLHKLL 203


>gi|28198799|ref|NP_779113.1| radical activating enzyme [Xylella fastidiosa Temecula1]
 gi|182681498|ref|YP_001829658.1| radical SAM domain-containing protein [Xylella fastidiosa M23]
 gi|28056890|gb|AAO28762.1| radical activating enzyme [Xylella fastidiosa Temecula1]
 gi|182631608|gb|ACB92384.1| Radical SAM domain protein [Xylella fastidiosa M23]
 gi|307579952|gb|ADN63921.1| radical SAM domain-containing protein [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 217

 Score =  150 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 46/227 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIFL+LQGE    G   VF R +GC L           +C++CDT +       G 
Sbjct: 8   LKISEIFLSLQGEANSVGWPTVFVRLTGCPL-----------RCQYCDTSYAFH---GGE 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
             ++D + + +    +      R+  +TGGEPL Q   + L++ L   GFE+++ET+G +
Sbjct: 54  WRSIDTIVNEVRSYGV------RHVCVTGGEPLAQKRCLLLLEKLCDAGFEVSLETSGAL 107

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF-------------- 166
           +    +D   VS     D+K  G  E  +  +P +  ++P + I F              
Sbjct: 108 DI-AAVD-SRVS--RVVDIKTPGSGEAHRNHWPNLTLLTPNDQIKFVLCSRVDYEWARTC 163

Query: 167 ----DFERFSLQPMDGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFI 208
               + ER  +        +    L   +        R  +Q HK +
Sbjct: 164 VAEHELERRCMVWFSPSKQDIAPTLLADWIISDRLGVRFQLQLHKLL 210


>gi|257463610|ref|ZP_05628001.1| radical SAM domain-containing protein [Fusobacterium sp. D12]
 gi|317061164|ref|ZP_07925649.1| radical SAM domain-containing protein [Fusobacterium sp. D12]
 gi|313686840|gb|EFS23675.1| radical SAM domain-containing protein [Fusobacterium sp. D12]
          Length = 222

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 100/235 (42%), Gaps = 48/235 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y + E+F ++ GEG  AG++A+F RF  CNL            C +CDT +   + +
Sbjct: 1   MPKYKVVEMFESINGEGKKAGQLALFIRFQFCNL-----------NCSYCDTKWANTKKS 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVET 118
                +++++ +   ++ I      +   LTGGEPLLQ  +  L++A   ++ FE+ +ET
Sbjct: 50  PFTWMSLEEILETARQRGI------KNITLTGGEPLLQSHIFALLEAFSKEKMFEVEIET 103

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQ--ELKLVFPQVNVSPENYIGF------DFER 170
           NG+I   +    I   P    D K+      E   +    +VS ++ + F      D ER
Sbjct: 104 NGSIPL-KKFQSIENPPSFTLDYKLPQSNMEEYMCLENFSSVSAKDTVKFVVSDLQDLER 162

Query: 171 ---------------FSLQPMDGPFLEENTNLAISYCFQ-NPK-WRLSVQTHKFI 208
                            L P+ G          + +  + +     + +Q HKFI
Sbjct: 163 AREIMNQYSLIGKCSLYLSPVFGKIP---LPTIVDFMKKYHLNGVNMQLQMHKFI 214


>gi|54294940|ref|YP_127355.1| hypothetical protein lpl2019 [Legionella pneumophila str. Lens]
 gi|53754772|emb|CAH16259.1| hypothetical protein lpl2019 [Legionella pneumophila str. Lens]
          Length = 217

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 92/234 (39%), Gaps = 50/234 (21%)

Query: 1   MKLY----SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG 56
           MK +     I EIF +LQGE    G + VF R +GC L           +C++CDT +  
Sbjct: 1   MKRFNEQLRITEIFHSLQGESVTVGLLTVFVRLTGCPL-----------RCQYCDTAYAF 49

Query: 57  IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIA 115
              + G    +D + + +         + ++  +TGGEPL Q   +PL+  L   G+ ++
Sbjct: 50  ---SGGEVVEIDDILNKV------ASYQCQHVCVTGGEPLAQPGCIPLLSKLCDAGYSVS 100

Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF------- 166
           +ET+G  +    +D   +      DLK    +E  K +   ++ + P + I F       
Sbjct: 101 LETSGARDI-ASVDQRVM---IVMDLKTPDSREADKNLLSNLSFLKPTDQIKFVLCSRTD 156

Query: 167 ------------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                         ER  L           T+LA          R  +Q HK +
Sbjct: 157 YEWACSMLSEYQLAERVQLLFSPSWNQLNPTDLANWIIQDKLPVRFQLQLHKIL 210


>gi|261417330|ref|YP_003251013.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373786|gb|ACX76531.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302325710|gb|ADL24911.1| radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 224

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 91/231 (39%), Gaps = 45/231 (19%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + EIF +++GEG   G+ AVF R  GCNL           +C +CD+ +  ++G    +
Sbjct: 2   KVCEIFKSIEGEGIRMGQAAVFVRLHGCNL-----------RCSYCDSMYA-VEGPDFKQ 49

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
            +V ++   +E      E   +   LTGGEPL+   V  L+ A +  GFE+ +ETNGT+ 
Sbjct: 50  MSVGEVLAAVE--MYRNESGVKCVTLTGGEPLIHEGVGELLTAFSDAGFEVNIETNGTVP 107

Query: 124 -------PPQGIDWICVSPKAGCDLKIKGG------QELKLVFPQVNVSPENY------- 163
                      +DW C S      +K++          LK V   V    E         
Sbjct: 108 CKWQLPGLFYTMDWKCKSSGMSARMKMENIISLGKNDVLKFVVGSVEDLQEAEGVVARLS 167

Query: 164 --IGFDFERFSLQPMDGPFLEENTNLAISY-----CFQNPKWRLSVQTHKF 207
                +     + P+ G   E      +++            R  VQ HK 
Sbjct: 168 LTSPDNMPHIFISPVWG---ELTNEQIVNWMVGSKVMTQNNARFQVQLHKI 215


>gi|168182488|ref|ZP_02617152.1| radical SAM domain protein [Clostridium botulinum Bf]
 gi|237794898|ref|YP_002862450.1| radical SAM domain-containing protein [Clostridium botulinum Ba4
           str. 657]
 gi|182674381|gb|EDT86342.1| radical SAM domain protein [Clostridium botulinum Bf]
 gi|229261475|gb|ACQ52508.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 221

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/232 (24%), Positives = 99/232 (42%), Gaps = 48/232 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + E F+++ GEG  +G++A+F RF+GCNL            C +CDT +   +     
Sbjct: 3   FKVVERFVSINGEGRRSGQLAIFIRFAGCNL-----------NCSYCDTLWANEKDVSYE 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVETNGT 121
             +   + D I+ Q I      +   LTGGEPL+Q  +  L++ L   +   + +ETNG+
Sbjct: 52  LISSKDIYDYIKSQKI------KNVTLTGGEPLMQKGIVELLKLLSKDKELYVEIETNGS 105

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQ-ELKLVFPQ-VNVSPENYIGF------DFER--- 170
           +   + +D I  SP+   D K+     E K+       ++ ++ + F      D E+   
Sbjct: 106 VLLDEFLD-IENSPRFTMDYKLPSSNMENKMALDNFRYLTNKDTVKFVSGSIEDLEKAKE 164

Query: 171 ------------FSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
                         + P+ G     N +  + +   N      L VQ HK I
Sbjct: 165 IIKKYNLANTTNVYISPVFGKI---NLDTIVEFMKNNKMNGVNLQVQLHKII 213


>gi|257454238|ref|ZP_05619508.1| radical SAM domain protein [Enhydrobacter aerosaccus SK60]
 gi|257448411|gb|EEV23384.1| radical SAM domain protein [Enhydrobacter aerosaccus SK60]
          Length = 240

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 85/236 (36%), Gaps = 55/236 (23%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + EIF +LQGE   AG   +F R +GC L           +C +CDT++  +    G 
Sbjct: 22  LKVTEIFYSLQGEALSAGLPTIFIRLTGCPL-----------RCVYCDTEYAFV---GGE 67

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R ++  +        +      +   LTGGEPL Q + + L+  L   G+EI++ET+G +
Sbjct: 68  RMSLAGILA------VCQSFPCQRICLTGGEPLAQPNAIALMNLLLAHGYEISLETSGAL 121

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQE-----------------LKLVFPQVN-------V 158
              +    +        D+K    QE                 +K V    +       +
Sbjct: 122 SVAEVPTAVS----KVMDIKTPSSQEADKNLWQNIPYLTAHDQIKFVIMNRDDYDWSKQI 177

Query: 159 SPENYIGFDFERFSLQPMDGPFLEE------NTNLAISYCFQNPKWRLSVQTHKFI 208
             +  +          PM      +       T+LA          R  +Q HK I
Sbjct: 178 LADYQLDKKVATVWFSPMFNVEERQANVPTLATDLAEWILADALPVRFQLQLHKII 233


>gi|187779781|ref|ZP_02996254.1| hypothetical protein CLOSPO_03377 [Clostridium sporogenes ATCC
           15579]
 gi|187773406|gb|EDU37208.1| hypothetical protein CLOSPO_03377 [Clostridium sporogenes ATCC
           15579]
          Length = 226

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/232 (24%), Positives = 98/232 (42%), Gaps = 48/232 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + E F+++ GEG  +G++A+F RF+GCNL            C +CDT +   +     
Sbjct: 8   FKVVERFVSINGEGRRSGQLAIFIRFAGCNL-----------NCSYCDTLWANEKDVSYQ 56

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVETNGT 121
             +   + D I+ Q I      +   LTGGEPL+Q  +  L++ L   +   + +ETNG+
Sbjct: 57  LISSKDIYDYIKSQKI------KNVTLTGGEPLMQKGIVELLKVLSKDKELYVEIETNGS 110

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQ-ELKLVFPQ-VNVSPENYIGF------DFER--- 170
           +   + +D I  SP    D K+     E K+       ++ ++ + F      D E+   
Sbjct: 111 VLLDEFLD-IENSPSFTMDYKLPSSNMENKMALDNFRYLTNKDTVKFVSGSIEDLEKAKE 169

Query: 171 ------------FSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
                         + P+ G     N +  + +   N      L +Q HK I
Sbjct: 170 IIKKYNLVNTTNIYISPVFGKI---NLDTIVEFMKNNKMNGVNLQLQLHKII 218


>gi|198282218|ref|YP_002218539.1| Radical SAM domain-containing protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667706|ref|YP_002424583.1| radical SAM domain protein [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198246739|gb|ACH82332.1| Radical SAM domain protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519919|gb|ACK80505.1| radical SAM domain protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 214

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 61/229 (26%), Positives = 86/229 (37%), Gaps = 50/229 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE    GR A F R +GC L           +CR+CDT +    G    
Sbjct: 5   LRITEIFHSLQGETRSVGRPATFVRLTGCPL-----------RCRYCDTAYAFHGGEW-- 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
                ++ +++E+    G    R  V+TGGEPL Q D +PL+  L   G E+ +ET+G +
Sbjct: 52  ----RRIPEILEQVRAGG---NRLVVVTGGEPLAQADVLPLMTQLCDAGHEVFLETSGAL 104

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQE-----------------LKLV------FPQVNVS 159
               G+D   V      DLK     E                 +K V      +      
Sbjct: 105 SL-AGVDTRVV---KVLDLKSPDSGECERNLWENLPLLNPQDQIKFVLCSRADYDWAKEV 160

Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                  +       P  G     +  LA      +   RL +Q HK I
Sbjct: 161 LAREALAERCEILFSPSHGTLALRD--LAEWMLADHLPVRLQIQLHKLI 207


>gi|220917757|ref|YP_002493061.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955611|gb|ACL65995.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 210

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 97/228 (42%), Gaps = 55/228 (24%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + EIF ++QGEG  AGR  VF RF+GC+L           +C +CDT +    G    R
Sbjct: 2   RVTEIFFSIQGEGSRAGRPCVFVRFTGCDL-----------RCGYCDTAYAFHGGADMDR 50

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
                 A ++ E         R+  LTGGEP+LQ ++P L + L  RG+E+AVET+G   
Sbjct: 51  ------AAILAE---VARHPARFVCLTGGEPMLQRELPDLARELLARGYEVAVETHGQRP 101

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENYIGF-----DFERFSLQPMD 177
               +D +        D+K  G  E+      ++ + P + + F     D  R+S + + 
Sbjct: 102 ----LDALPAEAIRVVDVKTPGSGEVATDLAYLDRLQPHDEVKFVVCSEDDFRWSREVVR 157

Query: 178 GPFLEENTNLAISYCFQNPKW-------------------RLSVQTHK 206
              LE            +P W                   RLS+Q HK
Sbjct: 158 RHALEGRVQ-----VLFSPAWGQVAPRDLVRWMLESGLDARLSLQVHK 200


>gi|51948881|gb|AAU14361.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
          Length = 129

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 29/150 (19%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT-- 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               V  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G 
Sbjct: 51  ----VQTLDDIMGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL 149
           ++         V P+     DLK  G +E+
Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEV 127


>gi|262375547|ref|ZP_06068780.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Acinetobacter lwoffii SH145]
 gi|262309801|gb|EEY90931.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Acinetobacter lwoffii SH145]
          Length = 236

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 92/240 (38%), Gaps = 63/240 (26%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE   AG   VF R +GC L           +C +CDT +       G 
Sbjct: 18  LRITEIFYSLQGEANAAGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R ++D +         T + +  Y  +TGGEPL Q + +PL+Q L   G E+++ET+G +
Sbjct: 64  RQSLDDIIQ------TTLDFKTPYVCVTGGEPLAQPNALPLMQRLADLGCEVSLETSGAL 117

Query: 123 EPPQGIDWICVSPKAG--CDLKIKGGQEL-----------------KLVFPQVNVSPENY 163
           +  +      V P+     DLK     E+                 K V    N     +
Sbjct: 118 DVSK------VDPRISKVLDLKTPTSGEVARNLLSNLDHLTAHDQIKFVIC--NREDYEW 169

Query: 164 IGFDFERFSLQP------MDGPFLEENTNLAI--------SYCFQ-NPKWRLSVQTHKFI 208
                E++ LQ           F  E   + +         +  + +   R  +Q HK +
Sbjct: 170 SKQQLEQYQLQDKVSTVWFSPAFSVEKGAVCLPPLARDLAQWILEDHLPVRFQLQLHKLL 229


>gi|149173902|ref|ZP_01852531.1| hypothetical protein PM8797T_05675 [Planctomyces maris DSM 8797]
 gi|148847432|gb|EDL61766.1| hypothetical protein PM8797T_05675 [Planctomyces maris DSM 8797]
          Length = 226

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 27/196 (13%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF + QGEG   G  ++F R SGCNL           +C FCDT +      +G + 
Sbjct: 3   ISEIFHSPQGEGKWIGVPSIFIRTSGCNL-----------RCWFCDTPYTSW-NPEGEKM 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEP 124
           +VDQ+ + I +       +  + V+TGGEP+L      L Q L+  G  I +ET GTI  
Sbjct: 51  SVDQILEHIAQ------YDCEHVVVTGGEPMLSHEIESLTQRLHADGKIITIETAGTILS 104

Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF---L 181
               D + +SPK    + +   +     +   + +  +      E     P    F    
Sbjct: 105 DVHADLMSISPKLSNSIPVDNPE-----WAHRHDARRDQPTVIHELIKRHPYQIKFVVDR 159

Query: 182 EENTNLAISYCFQNPK 197
            E+      Y  + P+
Sbjct: 160 REDIAEIEDYLIRYPE 175


>gi|51948739|gb|AAU14290.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948741|gb|AAU14291.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948743|gb|AAU14292.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948745|gb|AAU14293.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948747|gb|AAU14294.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948749|gb|AAU14295.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948751|gb|AAU14296.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948753|gb|AAU14297.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948755|gb|AAU14298.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948757|gb|AAU14299.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948759|gb|AAU14300.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948761|gb|AAU14301.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948769|gb|AAU14305.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948773|gb|AAU14307.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948775|gb|AAU14308.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948791|gb|AAU14316.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948831|gb|AAU14336.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948833|gb|AAU14337.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948839|gb|AAU14340.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948845|gb|AAU14343.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948847|gb|AAU14344.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948851|gb|AAU14346.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948853|gb|AAU14347.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948855|gb|AAU14348.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948871|gb|AAU14356.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948875|gb|AAU14358.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948883|gb|AAU14362.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
          Length = 129

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 29/150 (19%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT-- 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G 
Sbjct: 51  ----IQTLDDIMGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL 149
           ++         V P+     DLK  G +E+
Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEV 127


>gi|322667352|gb|EFY63516.1| radical SAM domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
          Length = 141

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 60/143 (41%), Gaps = 17/143 (11%)

Query: 82  EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC- 139
               R+ V+TGGEP +   +PL   L K GF   +ET+GT E       W+ VSPK    
Sbjct: 1   GYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVCCTPNTWVTVSPKVNMR 60

Query: 140 ------DLKIKGGQELKL------VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL 187
                    ++   E+K           ++              +LQP+     E+ T L
Sbjct: 61  GGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQK--EDATRL 118

Query: 188 AISYCFQNPKWRLSVQTHKFIGI 210
            I  C     WRLS+QTHK++ I
Sbjct: 119 CIETCIAR-NWRLSMQTHKYLNI 140


>gi|218781985|ref|YP_002433303.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218763369|gb|ACL05835.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 215

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 94/225 (41%), Gaps = 44/225 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF  +QGE  + G   VF R SGCNL           +CR+CDT +    G      
Sbjct: 5   VCEIFYGIQGESTYQGMPCVFIRLSGCNL-----------RCRWCDTGYAYDAGL----- 48

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124
               +++++E+    G+       +TGGEPLLQ + P L+ A    G  + +ETNG+ + 
Sbjct: 49  -TMSISEIMEK---AGQFGCPIVEVTGGEPLLQKETPALVDAFLNIGLLVLLETNGSQDI 104

Query: 125 ----PQGIDWICV-SPKAGCDL--------KIKGGQELKLV--------FPQVNVSPENY 163
                + I  + V  P +G +         ++    ELK V        F +  V   ++
Sbjct: 105 AKVDSRCIRIVDVKCPSSGMEEHNDYSNLSRMTEKDELKFVIASREDYEFARKRVRLLDF 164

Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
            G         P+ G    +   LA        + RL +Q HKFI
Sbjct: 165 DGCRMNAIHFSPVFGELDPK--TLAEWILQDRLEVRLHLQMHKFI 207


>gi|88604065|ref|YP_504243.1| radical SAM family protein [Methanospirillum hungatei JF-1]
 gi|88189527|gb|ABD42524.1| Radical SAM [Methanospirillum hungatei JF-1]
          Length = 234

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 93/223 (41%), Gaps = 40/223 (17%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            I EIF +LQGEG  +G   +F R +GCNL            C +CDT      G     
Sbjct: 34  KIAEIFTSLQGEGLTSGYPTIFIRLAGCNL-----------SCSYCDTPASRQGGMD--- 79

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI 122
            NV ++            ++  Y  +TGGEPLLQ D    L + L K G  +++ETNGT+
Sbjct: 80  MNVSEVVA------GALLQKPHYVCITGGEPLLQKDEVAELARQLIKAGKMVSIETNGTV 133

Query: 123 E-------PPQGIDWICVSPKAGCDLK----IKGGQELKLVF---PQVNVSPENYIGFDF 168
                       +D  C S     ++     +K    +K V      +  + +  +    
Sbjct: 134 PFDDLPSDISICMDVKCPSSGEFSNINLLSDLKSTDSVKFVVGTDDDLQYAEKVIMSHPT 193

Query: 169 E-RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           +    + P+ G   +   +  +S   +N   R+ +Q HKFIG+
Sbjct: 194 KAEIFISPIYGTDYQRIASYILS---RNLPARMQLQLHKFIGL 233


>gi|195953034|ref|YP_002121324.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932646|gb|ACG57346.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 212

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 93/233 (39%), Gaps = 49/233 (21%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV--GIQGTKGG 63
           I E+F ++QGEG   G  A+F RF GCNL           +C +CD        + TK  
Sbjct: 2   INEVFYSIQGEGFLIGTPALFVRFQGCNL-----------RCVWCDEKNALDFDKTTKSY 50

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
              ++++ D++              VLTGGEPLL  D + +          I +ETN TI
Sbjct: 51  TKAIEEIEDILAAH------NPSLIVLTGGEPLLNEDFINIFSYFKSLDKTIQIETNATI 104

Query: 123 EPPQ--------GIDWICVSPKAGCDLKIK-------GGQELKLVFPQ---VNVSPENYI 164
                          +I +SPK   +  I           ELK+V  +     +    Y+
Sbjct: 105 LKDDIETLFKTYARTYITLSPKYISNYIIHPKFLAFDKNIELKIVVDEHLNEGILEREYM 164

Query: 165 GFDFER--FSLQPMDG----PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
               E+    LQP+       FL++   LA  +       R+  Q HK +G++
Sbjct: 165 KPFIEKGLLILQPLWENGNVKFLDKAIKLAEKF-----NTRIIPQMHKLLGLK 212


>gi|51948767|gb|AAU14304.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948815|gb|AAU14328.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948877|gb|AAU14359.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948903|gb|AAU14372.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948907|gb|AAU14374.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
          Length = 129

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 29/150 (19%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT-- 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               ++ L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G 
Sbjct: 51  ----INTLDDIMGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL 149
           ++         V P+     DLK  G +E+
Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEV 127


>gi|51948763|gb|AAU14302.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
          Length = 129

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 29/150 (19%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT-- 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G 
Sbjct: 51  ----IQTLDDIMGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL 149
           ++         V P+     DLK  G +E+
Sbjct: 104 LDISA------VDPRVSRVIDLKTPGSKEV 127


>gi|51948733|gb|AAU14287.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948737|gb|AAU14289.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948765|gb|AAU14303.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948771|gb|AAU14306.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948783|gb|AAU14312.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948793|gb|AAU14317.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948795|gb|AAU14318.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948797|gb|AAU14319.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948799|gb|AAU14320.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948801|gb|AAU14321.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948811|gb|AAU14326.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948813|gb|AAU14327.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948817|gb|AAU14329.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948819|gb|AAU14330.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948825|gb|AAU14333.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948829|gb|AAU14335.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948835|gb|AAU14338.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948837|gb|AAU14339.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948841|gb|AAU14341.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948857|gb|AAU14349.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948859|gb|AAU14350.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948861|gb|AAU14351.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948863|gb|AAU14352.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948865|gb|AAU14353.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948867|gb|AAU14354.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948873|gb|AAU14357.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948887|gb|AAU14364.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948889|gb|AAU14365.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948891|gb|AAU14366.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948893|gb|AAU14367.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948895|gb|AAU14368.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948897|gb|AAU14369.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948905|gb|AAU14373.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
          Length = 129

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 29/150 (19%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT-- 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G 
Sbjct: 51  ----IHTLDDIMGQ---VAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL 149
           ++         V P+     DLK  G +E+
Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEV 127


>gi|218961765|ref|YP_001741540.1| Radical SAM [Candidatus Cloacamonas acidaminovorans]
 gi|167730422|emb|CAO81334.1| Radical SAM [Candidatus Cloacamonas acidaminovorans]
          Length = 209

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 93/233 (39%), Gaps = 49/233 (21%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           K  ++ EIF +LQGE  ++G   +F R S CNL           +C +CDT +   +G  
Sbjct: 3   KHLNVTEIFYSLQGESAYSGYPCIFIRLSECNL-----------RCVYCDTQYAFGKGKS 51

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
                   ++ ++EE     +       +TGGEPLLQ DV  L + L+K  ++I +ETNG
Sbjct: 52  ------MAISSIMEE---VKKYPCSLTEITGGEPLLQEDVDALFEELHKSSYKILLETNG 102

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGG-----------------QELKLVFP-----QVNV 158
            I   +  D++        D+K  G                   ELK V       Q  +
Sbjct: 103 AISLEKVPDYV----IKIVDVKTPGSGMVDAFLKDNLDYLNDKDELKFVLTDKNDYQFAL 158

Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
           S               P+      +   LA        K +L++Q HK IGI 
Sbjct: 159 SFLAQYKPKVNIIHFSPLTEVLEPK--ELAKWMLKDGIKAKLTLQLHKIIGIE 209


>gi|237755689|ref|ZP_04584298.1| radical SAM domain protein [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237692139|gb|EEP61138.1| radical SAM domain protein [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 217

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 97/228 (42%), Gaps = 38/228 (16%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           + + + EIF +++GEG   G   VF R  GCNL           +C +CDT +       
Sbjct: 8   ETFKVVEIFRSVEGEGRWVGLPVVFIRLEGCNL-----------RCSWCDTPYSYT---- 52

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           G  + +  + D+++E     +   +   +TGGEP    ++  L++ L +  +++ +ETNG
Sbjct: 53  GENFKLLSITDILDE---IKKYNLKRVCITGGEPFFTENLDVLVENLIENSYQVFIETNG 109

Query: 121 TIE--PPQGID----WICVSPKAG----CDLKIKGGQELKLVFPQVNVSPENYIGFDF-- 168
           T+     + +D    +I  SPK          +    E K V  +  +S ++ I  D   
Sbjct: 110 TLWNQNFENLDKSKIYITCSPKPPFYFINKNLLPYVSEFKFVVDET-LSIKHIIRSDLIE 168

Query: 169 ----ERFSLQPMDGP--FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               +   LQP       +++   L         + R+  Q HK +G+
Sbjct: 169 YIKNDTIVLQPESNKPEMVKKALELQDELLKFGIESRIIPQCHKVLGL 216


>gi|227498703|ref|ZP_03928847.1| radical SAM family protein [Acidaminococcus sp. D21]
 gi|226904159|gb|EEH90077.1| radical SAM family protein [Acidaminococcus sp. D21]
          Length = 222

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 88/235 (37%), Gaps = 52/235 (22%)

Query: 1   MKL--YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
           MK   + + EIF ++ GEG   G +A F RF+GCNL           +C +CDT +    
Sbjct: 5   MKTERFPVVEIFDSIDGEGKRTGYMATFVRFAGCNL-----------RCSYCDTAYAWDA 53

Query: 59  GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
                  + D L   I           +   LTGGEP+LQ    L + L   G+E+ +ET
Sbjct: 54  SQAKEWLSEDNLFQQITA------YPWKRVTLTGGEPMLQPIETLCRRLGDAGYEVNIET 107

Query: 119 NGT----IEPPQ----GIDWICVSPKAGCDLKIK--------GGQELKLVFPQVNVSPEN 162
           NG     +E P      +D    SP +G   +++            LK V   V      
Sbjct: 108 NGAAALFLERPDRLFYTMDIK--SPSSGEKDRMRWENLSLLTADDVLKFVVGSVEDLRYM 165

Query: 163 YIGFDF----ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLS-----VQTHKFI 208
                      +  + P+ G          + +   +   +LS     VQ HK I
Sbjct: 166 ETILSTYSIKAQIYVSPVFGKIEPVAL---VDFVKHH---QLSRVCVQVQLHKVI 214


>gi|262373096|ref|ZP_06066375.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Acinetobacter junii SH205]
 gi|262313121|gb|EEY94206.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Acinetobacter junii SH205]
          Length = 236

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 89/240 (37%), Gaps = 63/240 (26%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE    G   VF R +GC L           +C +CDT +       G 
Sbjct: 18  LRITEIFYSLQGEANTFGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R +++ + +   +       +  Y  +TGGEPL Q + + L+Q L   GF++++ET+G +
Sbjct: 64  RQSLEHIIETASQ------FKTPYICVTGGEPLAQPNCLVLLQRLCDLGFDVSLETSGAL 117

Query: 123 EPPQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLVFPQVNVSPENY 163
           +  +      V P+     DLK     E                 +K V    N +   +
Sbjct: 118 DVSK------VDPRVSKVLDLKTPTSNEDHRNLLTNLDYLTQHDQIKFVIC--NRADYEW 169

Query: 164 IGFDFERFSLQ---------PMDGPFLEE------NTNLAISYCFQNPKWRLSVQTHKFI 208
                E F LQ         P                +LA      +   R  +Q HK +
Sbjct: 170 SKQQLENFQLQDKVSTVWFSPAFAVEKGAVALPALARDLAQWILDDHLPVRFQLQLHKLL 229


>gi|256823062|ref|YP_003147025.1| Radical SAM domain-containing protein [Kangiella koreensis DSM
           16069]
 gi|256796601|gb|ACV27257.1| Radical SAM domain protein [Kangiella koreensis DSM 16069]
          Length = 213

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 83/232 (35%), Gaps = 50/232 (21%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    I EIF +LQGE    G   VF R +GC L           +C +CDTD+      
Sbjct: 1   MSKLRITEIFHSLQGESLTVGVPTVFVRLTGCPL-----------RCVYCDTDYAFG--- 46

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
            G     +++   I++          +  +TGGEPL Q  V    + L   G++++ ET 
Sbjct: 47  GGEWMRFEEILAEIKQ------YGCEHVCITGGEPLAQKRVFEFFKLLGDEGYKVSTETG 100

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQE-----------------LKLV------FPQV 156
           G  +       + V      DLK    QE                 +K V      +   
Sbjct: 101 GAHDISPVDKRVMV----VMDLKTPDSQEMARNLYSNIELLKPTDQVKFVICSRKDYEWC 156

Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
            ++ E Y           P  G    E  +LA        K R+ VQ HK I
Sbjct: 157 KMTVEQYDITSKCEVLFSPSYGQV--EYADLAEWILKDRLKVRMQVQLHKII 206


>gi|51948899|gb|AAU14370.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
          Length = 129

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 29/150 (19%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I EIF +LQGE    G   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEIFHSLQGETRTTGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT-- 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G 
Sbjct: 51  ----IHTLDDIMGQ---VATYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL 149
           ++         V P+     DLK  G +E+
Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEV 127


>gi|104781624|ref|YP_608122.1| hypothetical protein PSEEN2518 [Pseudomonas entomophila L48]
 gi|95110611|emb|CAK15322.1| conserved hypothetical protein [Pseudomonas entomophila L48]
          Length = 229

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 93/233 (39%), Gaps = 43/233 (18%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   ++E+F TLQGEG ++G  + F R SGCNL           QC +CDT F   + + 
Sbjct: 15  ETLWVEEVFRTLQGEGPYSGVPSTFVRLSGCNL-----------QCYWCDTQFEAFRWS- 62

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
                   + ++I              VLTGGEP  Q   PLIQ     GF++ +ETNGT
Sbjct: 63  ---MTPQAIVEMI---RGLEAPVPELVVLTGGEPFRQSIAPLIQVFLDEGFKVQIETNGT 116

Query: 122 I--EPPQGIDW-ICVSPKAGC-DLKI-KGGQELKLVFPQVNVSPEN-------------- 162
           I    P G D  +  SPK    DL++ +     K V     +   +              
Sbjct: 117 IYQAIPTGQDVTVVCSPKTPVLDLRMIEIITHYKYVLAHGEIDEVDGLPGTSTQRAGKKA 176

Query: 163 --YIGFDFERFSLQPM---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
             +     +   + P    D    ++N    I        + L++Q HK + +
Sbjct: 177 RLFRPPQGKPVYVMPRDDYDEQRNKDNLKACID-VATRQGYTLNMQLHKLLNL 228


>gi|51948725|gb|AAU14283.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948727|gb|AAU14284.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948729|gb|AAU14285.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948731|gb|AAU14286.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948735|gb|AAU14288.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948777|gb|AAU14309.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948779|gb|AAU14310.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948781|gb|AAU14311.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948785|gb|AAU14313.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948787|gb|AAU14314.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948789|gb|AAU14315.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948803|gb|AAU14322.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948807|gb|AAU14324.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948809|gb|AAU14325.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948821|gb|AAU14331.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948823|gb|AAU14332.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948827|gb|AAU14334.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948843|gb|AAU14342.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948849|gb|AAU14345.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948869|gb|AAU14355.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948879|gb|AAU14360.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948885|gb|AAU14363.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948901|gb|AAU14371.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
 gi|51948909|gb|AAU14375.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
          Length = 129

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 29/150 (19%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGT-- 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
               +  L D++ +         RY  +TGGEPL Q + +PL++ L   G+E+++ET+G 
Sbjct: 51  ----IHTLDDIMGQ---VATYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL 149
           ++         V P+     DLK  G +E+
Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEV 127


>gi|124486430|ref|YP_001031046.1| hypothetical protein Mlab_1617 [Methanocorpusculum labreanum Z]
 gi|124363971|gb|ABN07779.1| Radical SAM domain protein [Methanocorpusculum labreanum Z]
          Length = 202

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 85/221 (38%), Gaps = 34/221 (15%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + E F++LQGEG   G    F R SGCNL           +C +CDT++   +GT    
Sbjct: 2   RVTETFVSLQGEGERQGMPCFFLRLSGCNL-----------RCAWCDTEYSFEKGTDR-- 48

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI 122
            +VD+L   I +  ++      Y  +TGGEPLLQ    +PL++ L      + +ETNGTI
Sbjct: 49  -SVDELVKEIADSGLS------YVCVTGGEPLLQKEELIPLLEILAAADIHVDIETNGTI 101

Query: 123 E-------PPQGIDWICVSPKAGCDL----KIKGGQELKLVFPQVNVSPENYIGFDFERF 171
                       +D  C S     DL     +     +K V                 + 
Sbjct: 102 PFDDVSAYASICMDVKCPSSGEMSDLSLLSALTENDCVKFVIGDEADYLYMVEVLAAHKP 161

Query: 172 SLQPMDGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFIGIR 211
                  P    +T   +          R  +Q HK + ++
Sbjct: 162 KAPVCITPVFGTDTKWLVETIIAERLPVRFQLQLHKVVNVQ 202


>gi|119504267|ref|ZP_01626347.1| putative radical activating enzyme [marine gamma proteobacterium
           HTCC2080]
 gi|119459775|gb|EAW40870.1| putative radical activating enzyme [marine gamma proteobacterium
           HTCC2080]
          Length = 219

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 87/230 (37%), Gaps = 51/230 (22%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE    G   VF R +GC L           +C +CDT++    G    
Sbjct: 9   LRITEIFHSLQGEARSVGLPTVFVRLTGCPL-----------RCVWCDTEYAFSGGK--- 54

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
                 +  L +              +TGGEPL Q + +PL++ L   G+E+++ET+G +
Sbjct: 55  ------ILALTQILQQIKSFSCPRVCVTGGEPLAQPESLPLLKQLCDEGYEVSLETSGAL 108

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQ-VNVSPENYIGF--------DFERFS 172
                +D   VS     DLK     E  + ++     ++P + I F        D+ RF 
Sbjct: 109 PI-ADVDRR-VS--RVMDLKAPDSGESHRNLWDNIAELTPHDQIKFVISSRRDYDWARFK 164

Query: 173 L--------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           +               P  G        LA          R  +Q HK +
Sbjct: 165 VDELALAGRVGDILFSPTHGELQPR--ELAEWLLQDRVPGRFQLQLHKLL 212


>gi|184159135|ref|YP_001847474.1| organic radical activating protein [Acinetobacter baumannii ACICU]
 gi|213158261|ref|YP_002320312.1| radical SAM domain protein [Acinetobacter baumannii AB0057]
 gi|215482627|ref|YP_002324819.1| Radical SAM superfamily protein [Acinetobacter baumannii
           AB307-0294]
 gi|239501047|ref|ZP_04660357.1| Radical SAM superfamily protein [Acinetobacter baumannii AB900]
 gi|294836636|ref|ZP_06781319.1| Radical SAM superfamily protein [Acinetobacter sp. 6013113]
 gi|294841429|ref|ZP_06786112.1| Radical SAM superfamily protein [Acinetobacter sp. 6014059]
 gi|294860793|ref|ZP_06798562.1| Radical SAM superfamily protein [Acinetobacter sp. 6013150]
 gi|301346460|ref|ZP_07227201.1| Radical SAM superfamily protein [Acinetobacter baumannii AB056]
 gi|301512446|ref|ZP_07237683.1| Radical SAM superfamily protein [Acinetobacter baumannii AB058]
 gi|301594745|ref|ZP_07239753.1| Radical SAM superfamily protein [Acinetobacter baumannii AB059]
 gi|56131240|gb|AAV80241.1| putative organic radical activating enzyme [Acinetobacter
           baumannii]
 gi|183210729|gb|ACC58127.1| Organic radical activating enzyme [Acinetobacter baumannii ACICU]
 gi|213057421|gb|ACJ42323.1| radical SAM domain protein [Acinetobacter baumannii AB0057]
 gi|213988552|gb|ACJ58851.1| Radical SAM superfamily protein [Acinetobacter baumannii
           AB307-0294]
 gi|322509049|gb|ADX04503.1| organic radical activating protein [Acinetobacter baumannii 1656-2]
 gi|323519031|gb|ADX93412.1| organic radical activating protein [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 236

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 99/238 (41%), Gaps = 59/238 (24%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE   +G   VF R +GC L           +C +CDT +       G 
Sbjct: 18  LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R +++ + +  E      + +  Y  +TGGEPL Q + + L+Q L   GF++++ET+G +
Sbjct: 64  RLSLEHIIETAE------KYQTPYICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSGAL 117

Query: 123 EPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVN-VSPENYIGF-----DFERFSL 173
           +  +      V P+     DLK    G+E + +   ++ ++P + I F     +   +S 
Sbjct: 118 DVSR------VDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKFVICNREDYEWSK 171

Query: 174 QPMDGPFLEE-----------------------NTNLAISYCFQNPKWRLSVQTHKFI 208
           Q ++   L+                          +LA          R  +Q HK +
Sbjct: 172 QQVEQYQLQTKVSTVWFSPAFAVEKGAVGLPRLARDLAQWILDDKLPVRFQLQLHKLL 229


>gi|86157724|ref|YP_464509.1| radical SAM family protein [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774235|gb|ABC81072.1| Radical SAM [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 210

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 99/230 (43%), Gaps = 55/230 (23%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + EIF ++QGEG  AGR  VF RF+GC+L           +C +CDT +    G    R
Sbjct: 2   RVTEIFFSIQGEGSRAGRPCVFVRFTGCDL-----------RCGYCDTAYAFHGGVDMDR 50

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
                 A ++ E         R+  LTGGEP+LQ ++P L + L  RG+E+AVET+G   
Sbjct: 51  ------AAVLAE---VARHPARFVCLTGGEPMLQRELPDLARDLVARGYEVAVETHGQRP 101

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENYIGF-----DFERFSLQPMD 177
               +D +        D+K  G  E+   F  ++ + P + + F     D  R+S + + 
Sbjct: 102 ----LDALPAEAIRVVDVKTPGSGEVTTDFAYLDRLQPHDEVKFVVCSEDDFRWSREVVR 157

Query: 178 GPFLEENTNLAISYCFQNPKW-------------------RLSVQTHKFI 208
              LE            +P W                   RLS+Q HK I
Sbjct: 158 RHALEGRVQ-----VLFSPAWGQVAPRDLVRWMLESGLDARLSLQVHKVI 202


>gi|71901732|ref|ZP_00683804.1| Radical SAM [Xylella fastidiosa Ann-1]
 gi|71728504|gb|EAO30663.1| Radical SAM [Xylella fastidiosa Ann-1]
          Length = 217

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 92/227 (40%), Gaps = 46/227 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIFL+LQGE    G   VF R +GC L           +C++CDT +       G 
Sbjct: 8   LKISEIFLSLQGEANSVGWPTVFVRLTGCPL-----------RCQYCDTSYAFH---GGE 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
             ++D + + +    +      R+  +TGGEPL Q   + L++ L    FE+++ET+G +
Sbjct: 54  WRSIDTIVNEVRRYGV------RHVCVTGGEPLAQKRCLLLLEKLCDADFEVSLETSGAL 107

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF-------------- 166
           +    +D   VS     D+K  G  E  +  +P +  ++P + I F              
Sbjct: 108 DI-AAVD-SRVS--RVVDIKTPGSGEAHRNHWPNLTLLTPNDQIKFVLCSRVDYEWARTC 163

Query: 167 ----DFERFSLQPMDGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFI 208
               + ER  +        +    L   +        R  +Q HK +
Sbjct: 164 VAEHELERRCMVWFSPSKQDIAPTLLADWIISDRLGVRFQLQLHKLL 210


>gi|290967883|ref|ZP_06559433.1| radical SAM domain protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290782022|gb|EFD94600.1| radical SAM domain protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 210

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 89/225 (39%), Gaps = 44/225 (19%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           KLY + E+F ++ GEG  AG +A F R  GCNL           +C +CDT +   +GT 
Sbjct: 4   KLY-VNELFNSIDGEGRRAGELASFIRLCGCNL-----------RCSYCDTTYAFTEGTP 51

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
                V+++   ++          R   LTGGEPLLQ    L+Q L  R   + +ETNG+
Sbjct: 52  ---MAVEEILSQLQ---------YRNITLTGGEPLLQDVHLLLQRLQDRD--VNIETNGS 97

Query: 122 IEPPQGID----WICVSPKAGCDLKIKGGQE-----------LKLVF-PQVNVSPENYIG 165
           +     +     W  V  K+         +E           LK V     ++     I 
Sbjct: 98  VSIRPYLSYSHVWFTVDYKSISSGMTTAMKEENFQLLRPQDVLKFVVGTHADLEQARKIC 157

Query: 166 FDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
             F       +   F        ++Y        WRL +Q HK+I
Sbjct: 158 AYFNPSCPIYISAVFAAIEPKEIVAYMEAYRLMNWRLQLQLHKYI 202


>gi|223938514|ref|ZP_03630406.1| Radical SAM domain protein [bacterium Ellin514]
 gi|223892776|gb|EEF59245.1| Radical SAM domain protein [bacterium Ellin514]
          Length = 244

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 89/241 (36%), Gaps = 49/241 (20%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EI+L+LQGE   AG   +F R + CNL           +C +CDT +   +G K G  
Sbjct: 7   VNEIYLSLQGESTFAGLPCIFVRLTACNL-----------RCSYCDTAYAFTEGAKQGMA 55

Query: 66  NVDQLADLIEEQW--ITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
            +      +   +    G  +     LTGGEPLLQ + +PL++ L   GF + +ET+G  
Sbjct: 56  EMLAEIRTLAASYSQTVGGHKMPLIELTGGEPLLQPNSLPLMKTLCDEGFTVLIETSGAH 115

Query: 123 EPPQ-------GIDWICVSPKAGCDLK------IKGGQELKLV--------FPQVNVSPE 161
           +  +        +D  C S       +      +K   E+K V        + +  +   
Sbjct: 116 DISKIDSRVRRIMDLKCPSSGEVLRNRRENLRYLKNSDEIKFVIGTEQDYEWAKQQIVEH 175

Query: 162 NYIGFDFERF-SLQPMDGPFLEEN-------------TNLAISYCFQNPKWRLSVQTHKF 207
                    F  +QP+     ++                L           R  +Q HK 
Sbjct: 176 KLDAICPLLFSWVQPLTPEQQDKALKKVPAGQTPITRLQLVERIIADALPVRFQLQMHKI 235

Query: 208 I 208
           I
Sbjct: 236 I 236


>gi|257077184|ref|ZP_05571545.1| ATP binding cassette transporter, ExsD protein related [Ferroplasma
           acidarmanus fer1]
          Length = 229

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 43/230 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +K+Y I EIFL++QGEG ++G   VF R   CNL           +C +CDT +   +  
Sbjct: 14  LKMY-INEIFLSIQGEGLYSGEKMVFIRTEYCNL-----------RCSWCDTKYSFYE-- 59

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
            G   ++D++ +    + I       +  LTGGEPLLQ D+  L+  L++  + I +ET+
Sbjct: 60  -GKEMSIDEIVE--SARNINSGHGASWICLTGGEPLLQKDISVLVDRLSEE-YNILLETS 115

Query: 120 GTI----------EPPQGIDWICVSPKAGCDLK------IKGGQELKLVFPQV---NVSP 160
           G++          +  + ID+   S              ++ G  +K V   +   NV+ 
Sbjct: 116 GSLNIGRFLPNHVKVKKDIDFKLPSSGMYRKFNDKNISYMEEGDYIKFVVNDLNDFNVAM 175

Query: 161 ENYIGFDFE-RFSLQPMDGPFLEENTNLAISYCFQNP-KWRLSVQTHKFI 208
           E         +  +QP+ G  ++    LA ++  + P   RL +Q HK+I
Sbjct: 176 EEIEKIGKNVKIVVQPVYGTDIK---VLADAFIDKAPSNARLMLQEHKYI 222


>gi|312898407|ref|ZP_07757797.1| radical SAM domain protein [Megasphaera micronuciformis F0359]
 gi|310620326|gb|EFQ03896.1| radical SAM domain protein [Megasphaera micronuciformis F0359]
          Length = 217

 Score =  147 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 59/229 (25%), Positives = 87/229 (37%), Gaps = 46/229 (20%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + E F+++ GEG  AG +A+F RF GCNL            C +CDT +          
Sbjct: 2   RVVEKFVSINGEGQRAGELALFIRFQGCNL-----------SCTYCDTAWANEADCPYEE 50

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
            +  ++ D    + +T         LTGGEPLLQ  +  LI  L+K GF + +ETNG + 
Sbjct: 51  ESPQEIVDYACREGVTD------ITLTGGEPLLQEGIDELIDLLSKHGFHVEIETNGAVS 104

Query: 124 PPQGIDWICV--SPKAGCDLKIKGG-----------------QELKLVF---PQVNVSPE 161
                   C    P    D K+ G                    +K V      +  + E
Sbjct: 105 LLP----FCQKRRPSFTMDYKLPGSGCEKAMMTGNFAILTEKDTVKFVVSSTEDLQKAEE 160

Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
               +D        +   F   +    + +  Q     WRL +Q HKFI
Sbjct: 161 IATRYDLVNHCAVYISPVFGSIDPAQMVDFMKQRRLNGWRLQLQLHKFI 209


>gi|86359303|ref|YP_471195.1| organic-radical-activating protein [Rhizobium etli CFN 42]
 gi|86283405|gb|ABC92468.1| organic-radical-activating protein [Rhizobium etli CFN 42]
          Length = 242

 Score =  147 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 88/241 (36%), Gaps = 49/241 (20%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +   + EIF  T+QGEG   G   VF R  GC+            +C +CD+ +  +   
Sbjct: 4   ETIRVSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDSLYA-VDSA 51

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
              ++    +  + +E             L+GG P +Q   PLI+  + +G+  A+ET G
Sbjct: 52  FRDQWLPMSVEAIWQEVTKLSGGNPLTVSLSGGNPAIQPLRPLIELGHSKGYRFALETQG 111

Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELK----------------LVFPQVNVSPEN 162
           ++     + +D + +SPK           ++                 ++F  V+ +   
Sbjct: 112 SVAQNWFRDLDVLVLSPKPPSSGMHTDWDQVDNCVRLSAGGPEIALKVVIFDDVDYAFAR 171

Query: 163 YIGFDFERF--SLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQT 204
            +G  +      LQP +    P  +E+  + I        W             R+  Q 
Sbjct: 172 EVGQRYPYIPLYLQPGNHTPPPSEDEDARIDIDGVMDRMHWLVDKVTVDRWFAPRVLPQL 231

Query: 205 H 205
           H
Sbjct: 232 H 232


>gi|260551478|ref|ZP_05825662.1| radical SAM superfamily protein [Acinetobacter sp. RUH2624]
 gi|260405472|gb|EEW98965.1| radical SAM superfamily protein [Acinetobacter sp. RUH2624]
          Length = 236

 Score =  147 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 98/238 (41%), Gaps = 59/238 (24%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE   +G   VF R +GC L           +C +CDT +       G 
Sbjct: 18  LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R +++ + +  E      + +  Y  +TGGEPL Q + + L+Q L   GF++++ET+G +
Sbjct: 64  RLSLEHIIETAE------KYQTPYICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSGAL 117

Query: 123 EPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVN-VSPENYIGF-----DFERFSL 173
           +  +      V P+     DLK    G+E + +   ++ ++  + I F     +   +S 
Sbjct: 118 DVSK------VDPRVSKVLDLKTPTSGEEHRNLISNLDYLTSHDQIKFVICNREDYEWSK 171

Query: 174 QPMDGPFLEE-----------------------NTNLAISYCFQNPKWRLSVQTHKFI 208
           Q ++   L+                          +LA          R  +Q HK +
Sbjct: 172 QQVEQYQLQNKVSTVWFSPAFAVEKGAVGLPRLARDLAQWILDDKLPVRFQLQLHKLL 229


>gi|258646637|ref|ZP_05734106.1| putative sigma-54 dependent DNA-binding response regulator
           [Dialister invisus DSM 15470]
 gi|260404058|gb|EEW97605.1| putative sigma-54 dependent DNA-binding response regulator
           [Dialister invisus DSM 15470]
          Length = 219

 Score =  147 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 88/231 (38%), Gaps = 43/231 (18%)

Query: 1   MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           MK  + + EIF ++ GEG   G +AVF RF+GCN            +C +CDT +   + 
Sbjct: 1   MKNKFPVAEIFDSIDGEGKRTGYMAVFVRFAGCN-----------IRCTYCDTAYALKES 49

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
                   ++L   I           +    TGGEPLL     +   L + G+EI +ETN
Sbjct: 50  DAEEFLTKEELLGRIRS------YPWKRITFTGGEPLLHPLQEICDILGEEGYEINIETN 103

Query: 120 GTIEPPQ--------GIDWICVSPKAGCDLKIKGGQE------LKLVFP---QVNVSPEN 162
           G +             +D+ C        +++   +E      LK V      +    E 
Sbjct: 104 GAVPLLARRSQNLFYTMDYKCTDSGMKSFMRLPNLKELTEEDVLKFVVSSKTDLEDMKEI 163

Query: 163 YIGFDFE---RFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
            I +      +F + P+ G          + Y  +    +  + VQ HK I
Sbjct: 164 IIKYFPRGGPKFYVSPVWGKIEPR---ELVEYVRKEKLAEVCVQVQLHKII 211


>gi|15614805|ref|NP_243108.1| hypothetical protein BH2242 [Bacillus halodurans C-125]
 gi|10174861|dbj|BAB05961.1| BH2242 [Bacillus halodurans C-125]
          Length = 236

 Score =  147 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 85/219 (38%), Gaps = 35/219 (15%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           MK   + EIF  T+QGEG   G+  +F R  GC+             C +CD+ F     
Sbjct: 1   MKRIPVMEIFGPTVQGEGMVIGQKTMFVRTGGCDY-----------SCSWCDSAFTWDGS 49

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118
            K      D++   +EE    G +   +  ++GG P L   +  L+  L+ +G  +A+ET
Sbjct: 50  LKATLRTADEIIAKLEE---IGGERFSHVSISGGNPALHKGIGELVDKLHDKGIRVALET 106

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELK---------------LVFPQVNVSPE 161
            G++  +    ID + +SPK           +L                +VF   +    
Sbjct: 107 QGSLWQDWFLKIDDLTISPKPPSSQMKTDFTKLDQIIERLDTKQMSLKVVVFNDEDFRYA 166

Query: 162 NYIGFDFER--FSLQPMDGPFLEENTNLAISYCFQNPKW 198
            Y+   +    F LQ  +   +  + +L I       +W
Sbjct: 167 EYVHERYPHVPFFLQVGNEDTVTGDNDLLIRTLLDRYEW 205


>gi|170756011|ref|YP_001781191.1| radical SAM domain-containing protein [Clostridium botulinum B1
           str. Okra]
 gi|169121223|gb|ACA45059.1| radical SAM domain protein [Clostridium botulinum B1 str. Okra]
          Length = 221

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 91/232 (39%), Gaps = 48/232 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + E F+++ GEG   G++A+F RF+GCNL            C +CDT +   +     
Sbjct: 3   FKVVESFVSINGEGRRCGQLAIFIRFAGCNL-----------NCSYCDTLWANEKDVPYE 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVETNGT 121
             +   + + I+       KE +   LTGGEPLLQ  +  L++ L   +   + +ETNG+
Sbjct: 52  VLSSKDIYEYIKS------KEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105

Query: 122 IEPPQGIDWICVSPKAGCDLKIK-----------------GGQELKLV------FPQVNV 158
           I   + ++ I  SP    D K+                      +K V        +   
Sbjct: 106 ILLDEFLN-IENSPSFTMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLEKARE 164

Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
               Y   D     + P+ G     N +  + +   N      L +Q HK I
Sbjct: 165 IINKYNLIDKTNVYISPVFGKI---NLDTIVEFMKNNRMNGVNLQLQLHKII 213


>gi|293609845|ref|ZP_06692147.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828297|gb|EFF86660.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123071|gb|ADY82594.1| queuosine biosynthesis protein QueE [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 236

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 98/238 (41%), Gaps = 59/238 (24%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE   +G   VF R +GC L           +C +CDT +       G 
Sbjct: 18  LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R++++ + +   +       +  Y  +TGGEPL Q + + L+Q L + GF++++ET+G +
Sbjct: 64  RFSLEHIIETATQ------FQTPYICVTGGEPLAQPNCLILLQRLCEAGFDVSLETSGAL 117

Query: 123 EPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVN-VSPENYIGF------------ 166
           +  +      V P+     DLK    G+E + +   ++ ++P + I F            
Sbjct: 118 DVSR------VDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKFVICNREDYEWSK 171

Query: 167 -DFERFSLQ---------PMDGPFLEE------NTNLAISYCFQNPKWRLSVQTHKFI 208
              E++ LQ         P                +LA          R  +Q HK +
Sbjct: 172 QQVEKYQLQTKVSTVWFSPAFAVEKGAVGLPRLARDLAQWILDDKLPVRFQLQLHKLL 229


>gi|51948805|gb|AAU14323.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
          Length = 129

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 29/150 (19%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4   TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGGTI- 51

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
             + +D +   +           RY  +TGGEPL Q + +PL++ L   G+E+++ET+G 
Sbjct: 52  --HTLDDIMGQVVA------YRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLETSGA 103

Query: 122 IEPPQGIDWICVSPKAG--CDLKIKGGQEL 149
           ++         V P+     DLK  G +E+
Sbjct: 104 LDISA------VDPRVSRVVDLKTPGSKEV 127


>gi|260556563|ref|ZP_05828781.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Acinetobacter
           baumannii ATCC 19606]
 gi|260409822|gb|EEX03122.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Acinetobacter
           baumannii ATCC 19606]
          Length = 236

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 99/238 (41%), Gaps = 59/238 (24%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE   +G   VF R +GC L           +C +CDT +       G 
Sbjct: 18  LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R +++ + +  E      + +  Y  +TGGEPL Q + + L+Q L   GF++++ET+G +
Sbjct: 64  RLSLEHIIETAE------KYQTPYICVTGGEPLAQPNCLILLQGLCDAGFDVSLETSGAL 117

Query: 123 EPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVN-VSPENYIGF-----DFERFSL 173
           +  +      V P+     DLK    G+E + +   ++ ++P + I F     +   +S 
Sbjct: 118 DVSR------VDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKFVICNREDYEWSK 171

Query: 174 QPMDGPFLEE-----------------------NTNLAISYCFQNPKWRLSVQTHKFI 208
           Q ++   L+                          +LA          R  +Q HK +
Sbjct: 172 QQVEQYQLQTKVSTVWFSPAFAVEKGAVGLPRLARDLAQWILDDKLPVRFQLQLHKLL 229


>gi|313906547|ref|ZP_07839877.1| Radical SAM domain protein [Eubacterium cellulosolvens 6]
 gi|313468616|gb|EFR63988.1| Radical SAM domain protein [Eubacterium cellulosolvens 6]
          Length = 218

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 45/229 (19%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + E F+++ GEG HAG +AVF RF GCNL            C +CDT +    G     
Sbjct: 2   KVVEKFVSINGEGTHAGELAVFVRFRGCNL-----------NCSYCDTMWANEPGCPYAE 50

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQAL-NKRGFEIAVETNGTI 122
            + +Q+   IEE  +      +   LTGGEPLLQ ++P L++ L  K+   + +ETNG +
Sbjct: 51  ESPEQIVSYIEETKV------KNVTLTGGEPLLQKEMPELLRLLSEKKELRVEIETNGAV 104

Query: 123 EPPQ---------GIDWICVSPKAGCDLK------IKGGQELKLVF------PQVNVSPE 161
           +             +D+   S      ++      ++    +K V        + +   +
Sbjct: 105 DLSGFRNGGGCVFTMDYKLPSSGCENGMRTENFSILEKKDTVKFVVGSRVDLERADQIIQ 164

Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
            Y   D       P+ G    E     ++Y  ++     R+ +Q HK I
Sbjct: 165 EYGLIDRCHVYFSPVFGKIEPE---QIVNYMVEHRLNGVRIQIQIHKVI 210


>gi|169632733|ref|YP_001706469.1| putative radical activating enzyme [Acinetobacter baumannii SDF]
 gi|169151525|emb|CAP00292.1| putative radical activating enzyme [Acinetobacter baumannii]
          Length = 236

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 99/238 (41%), Gaps = 59/238 (24%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE   +G   VF R +GC L           +C +CDT +       G 
Sbjct: 18  LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R +++ + +  E      + +  Y  +TGGEPL Q + + L+Q L   GF++++ET+G +
Sbjct: 64  RLSLEHIIETAE------KYQTPYICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSGAL 117

Query: 123 EPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVN-VSPENYIGF-----DFERFSL 173
           +  +      V P+     DLK    G+E + +   ++ ++P + I F     +   +S 
Sbjct: 118 DVSR------VDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKFVICNREDYEWSK 171

Query: 174 QPMDGPFLEE-----------------------NTNLAISYCFQNPKWRLSVQTHKFI 208
           Q ++   L+                          ++A          R  +Q HK +
Sbjct: 172 QQVEQYQLQTKVSTVWFSPAFAVEKGAVGLPRLARDMAQWILDDKLPVRFQLQLHKLL 229


>gi|146329949|ref|YP_001210257.1| BcepGomrgp37 [Burkholderia phage BcepGomr]
 gi|145321125|gb|ABP63608.1| BcepGomrgp37 [Burkholderia phage BcepGomr]
          Length = 260

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/253 (26%), Positives = 98/253 (38%), Gaps = 67/253 (26%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           +  IF T+QGEG + GR AVF R +GCNL           QC  CDT++   +     R 
Sbjct: 22  VHSIFYTIQGEGPYVGRPAVFIRLAGCNL-----------QCPGCDTEYSARK-----RM 65

Query: 66  NVDQLADLIEEQWITGEK-------------EGRYCVLTGGEPLLQVDVPLIQALNKRGF 112
            + ++   ++    T  +                  V+TGGEP  Q   PLI  L+  G+
Sbjct: 66  GLLEILTAVQTAIYTRPRARFALEPAFERKIPRPLIVITGGEPFRQSLFPLIWKLSGLGY 125

Query: 113 EIAVETNGTIEPPQGI--DW----ICVSPKAG--CDLKIKGGQELKLVFPQVNVSPEN-- 162
           ++ +E+NGT+ P  G   +W    + +SPKAG    L        K V  +  V P +  
Sbjct: 126 KVQIESNGTLAPLAGPFEEWPPFEVVISPKAGKVAALLHHRIIAYKYVLSEGTVDPADGL 185

Query: 163 ---YIGFDFE----------RFSLQPMD--GPF------------LEENTNLAISYCFQN 195
               +G                 +QP +   P              + N   AI      
Sbjct: 186 PTSVLGLPAAPARPHQGFAGTVYVQPAEHYWPMVDASERVTHHAENDANLVAAIDVAMTF 245

Query: 196 PKWRLSVQTHKFI 208
             + L +QTHK I
Sbjct: 246 -GYTLCLQTHKMI 257


>gi|331007035|ref|ZP_08330269.1| Queuosine Biosynthesis QueE Radical SAM [gamma proteobacterium
           IMCC1989]
 gi|330419162|gb|EGG93594.1| Queuosine Biosynthesis QueE Radical SAM [gamma proteobacterium
           IMCC1989]
          Length = 218

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 85/228 (37%), Gaps = 51/228 (22%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF ++QGE    G+  VF R +GC L           +C +CD+++       G 
Sbjct: 8   LKITEIFFSIQGEAQTVGKPTVFVRLTGCPL-----------RCHYCDSEYAFY---GGE 53

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R ++D +   +            Y  +TGGEPL Q +   L+  L + G ++++ET+G +
Sbjct: 54  RMSLDDIMAKVMS------YGATYVCVTGGEPLAQPEARTLLAQLCENGLQVSLETSGAL 107

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF------DFE----- 169
                ID I        D+K     E+ +  +  ++ +  E+ I F      D+E     
Sbjct: 108 ----AIDNIDPRVSVVMDVKTPSSGEMSRNDYDNISLLRAEDQIKFVIGDRQDYEWSLFK 163

Query: 170 -----------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHK 206
                           P+          L           R  +Q HK
Sbjct: 164 VSEYNLAGSVGEVLFSPIYEQLEPS--QLVEWILADRAPVRFQMQLHK 209


>gi|296112585|ref|YP_003626523.1| radical SAM superfamily protein [Moraxella catarrhalis RH4]
 gi|295920279|gb|ADG60630.1| radical SAM superfamily protein [Moraxella catarrhalis RH4]
 gi|326561347|gb|EGE11705.1| radical SAM superfamily protein [Moraxella catarrhalis 7169]
 gi|326570776|gb|EGE20801.1| radical SAM superfamily protein [Moraxella catarrhalis BC1]
 gi|326577706|gb|EGE27582.1| radical SAM superfamily protein [Moraxella catarrhalis O35E]
          Length = 266

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 47/232 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + EIF +LQGE   AG   +F R +GC L           +C +CDT +     + G 
Sbjct: 48  LKLTEIFYSLQGEALTAGLPTIFIRLTGCPL-----------RCHYCDTTYSF---SGGE 93

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R+ +D +   I +             +TGGEPL Q + + L+  L + G+E+++ET G +
Sbjct: 94  RWGLDDIMTHIAQ------YPCWRVCVTGGEPLAQPNAIALMHKLIQSGYEVSLETAGAL 147

Query: 123 EPPQGIDWIC-----VSPKAGCDLK--------IKGGQELKLVFPQV-------NVSPEN 162
                   +       SP +G   K        +    ++K+V           N+  ++
Sbjct: 148 SVANVPPLVSKVMDLKSPSSGEADKNLWENLAHLTLHDQIKIVIANRTDYEWAKNIITKH 207

Query: 163 YIGFDFERFSLQPMDG------PFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
            +        L PM           +  T+LA          R  +Q HK I
Sbjct: 208 ALDDKVGTIWLSPMFNIQENTSHAPKLATDLAEWILKDALPVRFGLQLHKII 259


>gi|222528238|ref|YP_002572120.1| radical SAM domain-containing protein [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455085|gb|ACM59347.1| Radical SAM domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 225

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 94/225 (41%), Gaps = 41/225 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           +++ E F++++GEG  +G  AVF RF+GCNL            C +CDT +   +  +  
Sbjct: 14  FNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------SCSWCDTKYAN-ENPQYE 61

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           +  +D L D I    I      +   LTGGEPL+Q  +  LI  L   GFE+ +ETNG++
Sbjct: 62  QIGIDALLDFILSTGI------KRVTLTGGEPLIQPHIYILIDRLIYEGFEVNIETNGSV 115

Query: 123 -------EPPQGIDWICVSPKAGCDLKIKGG------QELKLVFP--QVNVSPENYIGFD 167
                  +    +D+ C S      + +           LK V    +   + E  I   
Sbjct: 116 SIKHVPRDAIITMDYKCPSSGMEDRMIVDNISLLGQKDVLKFVVGTYEDLKTAERIIKTF 175

Query: 168 FER--FSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
             R      P+ G          + +  +N     R+ +Q HK I
Sbjct: 176 KPRCNIFFSPVFGMIKP---AEIVKFLIENKLFDTRVQIQLHKII 217


>gi|153940843|ref|YP_001390900.1| radical SAM domain-containing protein [Clostridium botulinum F str.
           Langeland]
 gi|152936739|gb|ABS42237.1| radical SAM domain protein [Clostridium botulinum F str. Langeland]
 gi|295318962|gb|ADF99339.1| radical SAM domain protein [Clostridium botulinum F str. 230613]
          Length = 221

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 48/232 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + E F+++ GEG   G++A+F RF+GCNL            C +CDT +   +     
Sbjct: 3   FKVVESFISINGEGRRCGQLAIFIRFAGCNL-----------NCSYCDTLWANEKDVPYE 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVETNGT 121
             +   + + I+       KE +   LTGGEPLLQ  +  L++ L   +   + +ETNG+
Sbjct: 52  VLSSKDIYEYIKS------KEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQ-ELKLVFPQVN-VSPENYIGF------------- 166
           I   + ++ I  SP    D K+     E K+       ++ ++ + F             
Sbjct: 106 ILLDEFLN-IENSPSFTMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLEKARE 164

Query: 167 --------DFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
                   D     + P+ G     N +  + +   N      L +Q HK I
Sbjct: 165 IINKYNLVDKTNVYISPVFGKI---NLDTIVEFMKNNRMNGVNLQLQLHKII 213


>gi|302876981|ref|YP_003845614.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307687672|ref|ZP_07630118.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302579838|gb|ADL53850.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
          Length = 220

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 97/239 (40%), Gaps = 60/239 (25%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y + E F+++ GEG  AG +AVF RF GCNL           +C +CDT +        
Sbjct: 1   MYKVVEKFVSINGEGLRAGELAVFIRFLGCNL-----------KCSYCDTKWANEPECPY 49

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRG-FEIAVETNG 120
              + +++   I+E  +      R   LTGGEPL+Q ++  LI  L K G   I +ETNG
Sbjct: 50  ELMSGEEIYAYIKETGV------RNVTLTGGEPLIQKEMKELIDLLLKDGLLRIEIETNG 103

Query: 121 TIEPPQGIDW------ICVSPKAGCDLK-----------IKGGQELKLVFPQVNVSPENY 163
           +++  Q I++      I +  K    L            +     +K V    N   E  
Sbjct: 104 SVDV-QQINYSSERVSITLDYKGKSSLMEGYMKRDSFKLLTKKDSVKFVV-GDNEDLERA 161

Query: 164 IGFDFERFSL--------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           + F  E   L              QP +     +N  L  +        R+ +Q HK+I
Sbjct: 162 LSFIKECELLEKTNVLFSCIFDKIQPAEVVEFMKNNKLIEA--------RIQLQLHKYI 212


>gi|148379522|ref|YP_001254063.1| radical SAM domain protein [Clostridium botulinum A str. ATCC 3502]
 gi|153934167|ref|YP_001383899.1| radical SAM domain-containing protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153937587|ref|YP_001387447.1| radical SAM domain-containing protein [Clostridium botulinum A str.
           Hall]
 gi|226948886|ref|YP_002803977.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|148289006|emb|CAL83095.1| putative radical SAM-superfamily protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|152930211|gb|ABS35711.1| radical SAM domain protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152933501|gb|ABS39000.1| radical SAM domain protein [Clostridium botulinum A str. Hall]
 gi|226841117|gb|ACO83783.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 221

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 48/232 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + E F+++ GEG   G++A+F RF+GCNL            C +CDT +   +     
Sbjct: 3   FKVVERFVSINGEGRRCGQLAIFIRFAGCNL-----------NCSYCDTLWANEKDVPYE 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVETNGT 121
             +   + + I+       KE +   LTGGEPLLQ  +  L++ L   +   + +ETNG+
Sbjct: 52  VLSSKDIYEYIKS------KEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQ-ELKLVFPQVN-VSPENYIGF------------- 166
           I   + ++ I  SP    D K+     E K+       ++ ++ + F             
Sbjct: 106 ILLDEFLN-IENSPSFTMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLEKARE 164

Query: 167 --------DFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
                   D     + P+ G     N +  + +   N      L +Q HK I
Sbjct: 165 IINKYNLVDKTNVYISPVFGKI---NLDTIVEFMKNNRMNGVNLQLQLHKII 213


>gi|90022171|ref|YP_527998.1| putative radical activating enzyme [Saccharophagus degradans 2-40]
 gi|89951771|gb|ABD81786.1| Radical SAM [Saccharophagus degradans 2-40]
          Length = 216

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 86/229 (37%), Gaps = 53/229 (23%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE    G   VF R +GC L           +C +CD+++       G 
Sbjct: 6   LRITEIFHSLQGEARTVGLPTVFVRLTGCPL-----------RCHYCDSEYAFH---GGE 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R + +Q+ + +           +Y  +TGGEPL Q   + L+  L   G+ +++ET+G +
Sbjct: 52  RLSFEQILEQV------AGFGAKYVCVTGGEPLAQPGCIDLLSRLCDLGYNVSLETSGAM 105

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQE-----------LKLVFPQVNVSPENYIGFDFERF 171
           +  +    + +      DLK     E           LKL   QV     +   +D+ RF
Sbjct: 106 DVSKVDHRVSI----VLDLKTPASGEQDKNLYTNIPLLKLK-DQVKFVICDRGDYDWARF 160

Query: 172 SL--------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHK 206
            L               P       +   LA          R  +Q HK
Sbjct: 161 QLDQLQLVSKVGDVLFSPSFEQLAPK--QLAEWILDDRLPVRFQMQLHK 207


>gi|325981315|ref|YP_004293717.1| Radical SAM domain-containing protein [Nitrosomonas sp. AL212]
 gi|325530834|gb|ADZ25555.1| Radical SAM domain protein [Nitrosomonas sp. AL212]
          Length = 219

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 50/231 (21%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
               + EIF +LQGE    G   VF R +GC L           +C +CDT +     T 
Sbjct: 8   TTLRVNEIFFSLQGETSRVGLPTVFVRLTGCPL-----------RCGYCDTAYAF---TG 53

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNG 120
           G   ++ ++ + I         +  Y  +TGGEPL Q   + L+ AL    + +++ET+G
Sbjct: 54  GENISIAEILNRI------AHYKTNYITVTGGEPLAQKACLVLLTALCDAKYSVSLETSG 107

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQ-VNVSPENYIGF------------ 166
            ++  Q +D          D+K  G  E+ K  +   ++++P++ I F            
Sbjct: 108 ALDLSQ-VDLRVC---KVMDIKTPGSGEVTKNNWENLIHLTPKDEIKFVLCDEADYQWAR 163

Query: 167 ---DFERFSL------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                ++ SL       P+          LA          R+ +Q HK +
Sbjct: 164 EIIRCKQLSLLCPILFSPVYDVLNPA--TLASWILRDELPVRMQLQMHKLL 212


>gi|326573561|gb|EGE23524.1| radical SAM superfamily protein [Moraxella catarrhalis 101P30B1]
          Length = 246

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 47/232 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + EIF +LQGE   AG   +F R +GC L           +C +CDT +     + G 
Sbjct: 28  LKLTEIFYSLQGEALTAGLPTIFIRLTGCPL-----------RCHYCDTTYSF---SGGE 73

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R+ +D +   I +             +TGGEPL Q + + L+  L + G+E+++ET G +
Sbjct: 74  RWGLDDIMTHIAQ------YPCWRVCVTGGEPLAQPNAIALMHKLIQSGYEVSLETAGAL 127

Query: 123 EPPQGIDWIC-----VSPKAGCDLK--------IKGGQELKLVFPQV-------NVSPEN 162
                   +       SP +G   K        +    ++K+V           N+  ++
Sbjct: 128 SVANVPPLVSKVMDLKSPSSGEADKNLWENLAHLTLHDQIKIVIANRTDYEWAKNIITKH 187

Query: 163 YIGFDFERFSLQPMDG------PFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
            +        L PM           +  T+LA          R  +Q HK I
Sbjct: 188 ALDDKVGTIWLSPMFNIQENTSHAPKLATDLAEWILKDALPVRFGLQLHKII 239


>gi|50085673|ref|YP_047183.1| putative radical activating enzyme [Acinetobacter sp. ADP1]
 gi|49531649|emb|CAG69361.1| putative radical activating enzyme [Acinetobacter sp. ADP1]
          Length = 245

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 92/238 (38%), Gaps = 59/238 (24%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE   AG   VF R +GC L           +C +CDT +       G 
Sbjct: 27  LRITEIFYSLQGEANAAGLPTVFIRLTGCPL-----------RCTYCDTTYSF---EGGE 72

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R ++D++ +           +  Y  +TGGEPL Q + + L+  L+  G ++++ET+GT+
Sbjct: 73  RLSLDEIINT------ALSYKTPYICVTGGEPLAQPNCLILLSRLSDLGCQVSLETSGTL 126

Query: 123 EPPQGIDWICVSPKAG--CDLKIKGGQELKLV----------FPQVNVSPENYIGFDFER 170
           +  +      V P+     DLK     E K              Q+     N+  + + +
Sbjct: 127 DVSK------VDPRVSKVLDLKTPTSGEEKRNLLSNLDYLTQHDQIKFVICNHEDYIWSK 180

Query: 171 --------------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                               F+++       +   +LA      +   R  +Q HK +
Sbjct: 181 QQVVEYQLEKKVSTVWFSPAFAVEKGAVKLPQLARDLAQWILDDHLPVRFQLQLHKLL 238


>gi|206889913|ref|YP_002249329.1| radical activating enzyme [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741851|gb|ACI20908.1| radical activating enzyme [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 208

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 90/232 (38%), Gaps = 52/232 (22%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + EIF ++QGE   AG   VF R +GCNL           +C +CDT +   +   G  
Sbjct: 2   KVCEIFTSIQGESSLAGIPMVFVRLTGCNL-----------RCSYCDTKYAYYE---GEE 47

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
            +++++ + I           +Y  +TGGEPLLQ +   LI  L K    + +ETNG+I 
Sbjct: 48  LSINKVLEKIHS------FPFQYVEITGGEPLLQDETYKLINELVKS-HNVLIETNGSIP 100

Query: 124 PPQGIDWICVSPKAGCDLKIKGG-----------------QELKLVFPQVNVSP--ENYI 164
             +    +    K   D+K  G                   E+K V    +     +N+I
Sbjct: 101 IEK----VNPEVKIIMDIKTPGSGMSEKNYIENLRFLKKIDEVKFVLTNRDDYEWAKNFI 156

Query: 165 G---FDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI--GIR 211
                        P  G        LA          RL++Q HK+I   IR
Sbjct: 157 KNHEIKANEILFSPAYGILNPA--ELAKWLINDGISVRLNLQIHKYIFGNIR 206


>gi|326560168|gb|EGE10557.1| radical SAM superfamily protein [Moraxella catarrhalis 103P14B1]
 gi|326564255|gb|EGE14489.1| radical SAM superfamily protein [Moraxella catarrhalis 46P47B1]
 gi|326566195|gb|EGE16348.1| radical SAM superfamily protein [Moraxella catarrhalis 12P80B1]
 gi|326571649|gb|EGE21664.1| radical SAM superfamily protein [Moraxella catarrhalis BC7]
 gi|326573039|gb|EGE23015.1| radical SAM superfamily protein [Moraxella catarrhalis CO72]
          Length = 238

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 47/232 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + EIF +LQGE   AG   +F R +GC L           +C +CDT +     + G 
Sbjct: 20  LKLTEIFYSLQGEALTAGLPTIFIRLTGCPL-----------RCHYCDTTYSF---SGGE 65

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R+ +D +   I +             +TGGEPL Q + + L+  L + G+E+++ET G +
Sbjct: 66  RWGLDDIMTHIAQ------YPCWRVCVTGGEPLAQPNAIALMHKLIQSGYEVSLETAGAL 119

Query: 123 EPPQGIDWIC-----VSPKAGCDLK--------IKGGQELKLVFPQV-------NVSPEN 162
                   +       SP +G   K        +    ++K+V           N+  ++
Sbjct: 120 SVANVPPLVSKVMDLKSPSSGEADKNLWENLAHLTLHDQIKIVIANRTDYEWAKNIITKH 179

Query: 163 YIGFDFERFSLQPMDG------PFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
            +        L PM           +  T+LA          R  +Q HK I
Sbjct: 180 ALDDKVGTIWLSPMFNIQENTSHAPKLATDLAEWILKDALPVRFGLQLHKII 231


>gi|226952147|ref|ZP_03822611.1| radical activating enzyme [Acinetobacter sp. ATCC 27244]
 gi|294651041|ref|ZP_06728380.1| radical activating enzyme [Acinetobacter haemolyticus ATCC 19194]
 gi|226837109|gb|EEH69492.1| radical activating enzyme [Acinetobacter sp. ATCC 27244]
 gi|292823054|gb|EFF81918.1| radical activating enzyme [Acinetobacter haemolyticus ATCC 19194]
          Length = 238

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 51/234 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE    G   VF R +GC L           +C +CDT +       G 
Sbjct: 20  LRITEIFYSLQGEANTFGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 65

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R +++ + +   +       +  Y  +TGGEPL Q + + L+Q L   GF++++ET+G +
Sbjct: 66  RLSLEHIIETASQ------YKTPYICVTGGEPLAQPNCLILLQRLCDLGFQVSLETSGAL 119

Query: 123 E-------PPQGIDWICVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYIGFDFE 169
           +         + +D    + K      +          ++K V    N +   +     E
Sbjct: 120 DVSKVDSRVSKVLDLKTPTSKEDHRNLLTNLDYLTQHDQIKFVIC--NRADYEWSRQQLE 177

Query: 170 RFSLQ---------PMDGPFLEE------NTNLAISYCFQNPKWRLSVQTHKFI 208
           +F LQ         P                +LA      +   R  +Q HK +
Sbjct: 178 QFQLQDKVSTVWFSPAFAVEKGAVALPALARDLAQWILDDHLPVRFQLQLHKLL 231


>gi|251771685|gb|EES52260.1| Radical SAM family protein [Leptospirillum ferrodiazotrophum]
          Length = 213

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 90/229 (39%), Gaps = 47/229 (20%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I E F ++QGE   AG    F R +GC L           +CR+CDT +   +G + 
Sbjct: 1   MMRINETFFSIQGESTFAGWPCFFIRTTGCPL-----------RCRWCDTTYSFYEGEE- 48

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
                  L  L++E             +TGGEP    ++P L++ L   G  + +ET+G 
Sbjct: 49  -----RTLDSLVDEAL---SHPAPLVEVTGGEPFSAPELPRLVEKLLDAGKTVLIETSGA 100

Query: 122 IEPPQGIDWIC------VSPKAGCDL--------KIKGGQELKLVFPQVNVSPENYIGFD 167
           +  PQG+D  C        P +G            ++ G E+K V    +    ++    
Sbjct: 101 LPVPQGLDRRCHLVMDIKPPGSGMAHLMAEETFRALRPGDEIKAVI--ADRGDFDFCLDF 158

Query: 168 FERFSL--------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
            +R +L         P+ G        LA        + R+ +Q HK +
Sbjct: 159 LDRLALPREIPVTFSPVFGECSPG--ELAEWVLSSGREIRVGIQLHKIL 205


>gi|225025886|ref|ZP_03715078.1| hypothetical protein EUBHAL_00114 [Eubacterium hallii DSM 3353]
 gi|224956783|gb|EEG37992.1| hypothetical protein EUBHAL_00114 [Eubacterium hallii DSM 3353]
          Length = 221

 Score =  145 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 95/234 (40%), Gaps = 47/234 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y + E F+++ GEG  AG++A F R  GCNL            C +CDT +   +  
Sbjct: 1   MITYPVVEKFVSINGEGQKAGKIAAFIRMRGCNL-----------ACNYCDTSWANTKDC 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
                + ++L   ++E  I          LTGGEPLL  ++ PLI+AL   GF + +ETN
Sbjct: 50  PCEFLSAEELITWLKEHSIE------NVTLTGGEPLLTEEIAPLIEALGTAGFSVEIETN 103

Query: 120 GTIE----------PPQGIDWICVSPKAGCDLKIKG------GQELKLVFPQV-NVSPEN 162
           G++           P   +D+ C        +             +K V   + ++    
Sbjct: 104 GSVSLNTFDTLAHRPAFTMDYKCPDSGMENAMNTDNFSLLIPKDTVKFVVSSISDLDKAR 163

Query: 163 YIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKW---RLSVQTHKFI 208
            I   ++        L P+ G          + Y  ++  W   RL +Q HKFI
Sbjct: 164 EICIQYKVAEHCPIFLSPVFGRIEP---KEIVEYMIEH-HWNEARLQLQMHKFI 213


>gi|255525616|ref|ZP_05392550.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|296185503|ref|ZP_06853913.1| radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|255510706|gb|EET87012.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|296050337|gb|EFG89761.1| radical SAM domain protein [Clostridium carboxidivorans P7]
          Length = 221

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 57/232 (24%), Positives = 94/232 (40%), Gaps = 48/232 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + E F+++ GEG  +G++AVF RF+GCNL           +C +CDT +   +     
Sbjct: 3   FKVVEKFISINGEGPMSGQLAVFIRFAGCNL-----------RCSYCDTLWANEKDVPYE 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALN-KRGFEIAVETNGT 121
            +N  ++ + I+   I      +   LTGGEPL+Q D+  L++ L   +   + VETNG+
Sbjct: 52  TFNAKEIYEYIKSTSI------KNVTLTGGEPLMQQDIMELLKLLCEDKNLYVEVETNGS 105

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGG-----------------QELKLVFPQV----NVSP 160
           I   + +  +   P    D K+                      +K V   +        
Sbjct: 106 IAVDKFLK-VENPPSLTMDYKLPSSNMENNMNMDNLKYLTKNDTVKFVAGSIEDLEKAKN 164

Query: 161 ENYIGFDFE--RFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
             YI    E  R  + P+ G       +  + +   N      L VQ HK I
Sbjct: 165 IIYIHKLVEKTRVYISPVFGKI---AMDEIVQFMLDNKMNGVNLQVQLHKII 213


>gi|118594347|ref|ZP_01551694.1| Radical SAM [Methylophilales bacterium HTCC2181]
 gi|118440125|gb|EAV46752.1| Radical SAM [Methylophilales bacterium HTCC2181]
          Length = 216

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 91/231 (39%), Gaps = 52/231 (22%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   I EIF +LQGE    G   +F R +GC +           +C +CDT +   +   
Sbjct: 5   QTLKINEIFYSLQGESSRIGLPTIFIRLTGCPM-----------RCNYCDTAYAFHE--- 50

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           G   ++D + + I++       +  +  +TGGEPL Q +   L+  L   G+ +++ET G
Sbjct: 51  GKNLSIDAIIEEIKQ------YDTNFITVTGGEPLAQRNCYSLLDQLCSLGYNVSLETGG 104

Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGG-----------------QELKLVFPQV------- 156
            +     I+ +  + K   D+K  G                   E+K+V           
Sbjct: 105 AL----SINEVHENVKIILDIKTPGSGESENNHWDNLPLIKQKDEIKMVITNQEDYEWSK 160

Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
           N+  E  +  +++     P  G        LA      N K R+ VQ HK 
Sbjct: 161 NIIQEKGLYLNYDILF-SPSFGQLEPS--QLADWILQDNLKVRMQVQLHKI 208


>gi|169795077|ref|YP_001712870.1| putative radical activating enzyme [Acinetobacter baumannii AYE]
 gi|169148004|emb|CAM85867.1| putative radical activating enzyme [Acinetobacter baumannii AYE]
          Length = 236

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 98/238 (41%), Gaps = 59/238 (24%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE   +G   VF R +GC L           +C +CDT +       G 
Sbjct: 18  LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R +++ + +  E      + +  Y  +TGGEPL Q + + L+Q L    F++++ET+G +
Sbjct: 64  RLSLEHIIETAE------KYQTPYICVTGGEPLAQPNCLILLQRLCDASFDVSLETSGAL 117

Query: 123 EPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVN-VSPENYIGF-----DFERFSL 173
           +  +      V P+     DLK    G+E + +   ++ ++P + I F     +   +S 
Sbjct: 118 DVSR------VDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKFVICNREDYEWSK 171

Query: 174 QPMDGPFLEE-----------------------NTNLAISYCFQNPKWRLSVQTHKFI 208
           Q ++   L+                          +LA          R  +Q HK +
Sbjct: 172 QQVEQYQLQTKVSTVWFSPAFAVEKGAVGLPRLARDLAQWILDDKLPVRFQLQLHKLL 229


>gi|160893109|ref|ZP_02073897.1| hypothetical protein CLOL250_00655 [Clostridium sp. L2-50]
 gi|156865192|gb|EDO58623.1| hypothetical protein CLOL250_00655 [Clostridium sp. L2-50]
          Length = 222

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 46/234 (19%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  + + E F+++ GE   AG +AVF RF+GCNL            C +CDT +      
Sbjct: 1   MAKFKVAERFVSINGESVKAGELAVFIRFTGCNL-----------NCSYCDTKWANEADA 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALN-KRGFEIAVET 118
                  +++ D I+   +      R   LTGGEPL+Q D+  L+  L      ++ VET
Sbjct: 50  PYEELTDEEIYDYIKRTGV------RNVTLTGGEPLIQKDIDKLLLMLAMDEELQVEVET 103

Query: 119 NGTIEPPQ---GIDWICVS-----PKAGCDLKI--------KGGQELKLVFPQVN----- 157
           NG+++  +     D +  +     P +G +  +             +K V   +      
Sbjct: 104 NGSVDIAEFKALTDRVAFTLDYKLPGSGMESNMCFSNYNYIDKKDAVKFVSGSIKDLETA 163

Query: 158 VSPENYIGFDFE-RFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
               +    D +    + P+ G    E+    + +  +N     +L +Q HK+I
Sbjct: 164 RDIIHEWALDIKSNVYISPVYGKINPED---IVDFMIENEMNGVKLQLQLHKYI 214


>gi|261855156|ref|YP_003262439.1| radical SAM protein [Halothiobacillus neapolitanus c2]
 gi|261835625|gb|ACX95392.1| Radical SAM domain protein [Halothiobacillus neapolitanus c2]
          Length = 227

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 94/229 (41%), Gaps = 50/229 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE   AG   VF R +GC L           +C +CDT +     T G 
Sbjct: 18  LRITEIFRSLQGESESAGWPTVFVRLTGCPL-----------RCVYCDTAYAF---TGGE 63

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
           R ++  + D +           +   +TGGEPL Q   +PL+ +L   G  +++ET+G +
Sbjct: 64  RLSLLSILDQVAA------YHTQDVCVTGGEPLAQPACLPLLTSLCDAGHLVSLETSGAL 117

Query: 123 EPPQGIDWICVSP--KAGCDLKIKGGQEL-KLVFPQVN-VSPENYIGF-----DFERFSL 173
                     V P  +   DLK     E  K  F  ++ +   + I F     +  ++++
Sbjct: 118 SIEG------VDPRVRVVMDLKTPSSGEAEKNRFENIDLLKTSDEIKFVIGSAEDFKWAV 171

Query: 174 QPMDG------------PFLEENTNLAI-SYCFQN-PKWRLSVQTHKFI 208
           Q +              P   + T LA+  +  ++  + R   Q HK I
Sbjct: 172 QHVRQFQMDKRFNVLISPVFGQVTPLALADWILESGLRLRFQQQLHKLI 220


>gi|153005327|ref|YP_001379652.1| radical SAM domain-containing protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152028900|gb|ABS26668.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 210

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 88/225 (39%), Gaps = 45/225 (20%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + EIF +LQGEG  AGR  VF RF+GC+L           +C +CD+ +       G  
Sbjct: 2   RVTEIFFSLQGEGTRAGRPCVFVRFTGCDL-----------RCGYCDSAYAFH---GGRE 47

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
               ++   I           +   LTGGEP+LQ ++P L + L  RG E+ VET+G   
Sbjct: 48  LTRAEILAEIARH------PAKLVCLTGGEPMLQRELPELARELVARGHEVTVETHGQRP 101

Query: 124 ----PPQGIDWICV----SPKAGCDLKIKGG----QELKLV--------FPQVNVSPENY 163
               PP+ I  + V    S +   DL    G     E+K V        +    V     
Sbjct: 102 LDALPPETIRIVDVKTPGSREEAKDLAYLDGLRPQDEVKFVVCSEPDYRWSVDVVRRHRL 161

Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
            G         P  G        LA          RLS+Q HK I
Sbjct: 162 EG--RAHLLFSPAWGEVEPR--ELARWILRDGLDARLSLQIHKVI 202


>gi|170758709|ref|YP_001786976.1| radical SAM domain-containing protein [Clostridium botulinum A3
           str. Loch Maree]
 gi|169405698|gb|ACA54109.1| radical SAM domain protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 221

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 91/232 (39%), Gaps = 48/232 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + E F+++ GEG   G++A+F RF+GCNL            C +CDT +   +     
Sbjct: 3   FKVAERFVSINGEGRRCGQLAIFIRFAGCNL-----------NCSYCDTLWANEKDVPYE 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVETNGT 121
             +   + + I+       KE +   LTGGEPLLQ  +  L++ L   +   + +ETNG+
Sbjct: 52  VLSSKDIYEYIKS------KEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105

Query: 122 IEPPQGIDWICVSPKAGCDLKIK-----------------GGQELKLV------FPQVNV 158
           I   + ++ I  SP    D K+                      +K V        +   
Sbjct: 106 ILLDEFLN-IENSPSFTMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLEKARE 164

Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
               Y   D     + P+ G     N +  + +   N      L +Q HK I
Sbjct: 165 IINRYDLVDKTNVYISPVFGKI---NLDTIVEFMKNNRMNGVNLQLQLHKII 213


>gi|196230866|ref|ZP_03129727.1| Radical SAM domain protein [Chthoniobacter flavus Ellin428]
 gi|196225207|gb|EDY19716.1| Radical SAM domain protein [Chthoniobacter flavus Ellin428]
          Length = 231

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 20/142 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF ++QGEG   G  +VF R SGCNL           +CR+CDT +      +G   
Sbjct: 3   ISEIFYSIQGEGELTGVPSVFVRTSGCNL-----------RCRWCDTKYASW-NPQGDEM 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP 124
           ++ ++   ++           + VLTGGEP++   +  L Q   + G  I +ET GTI P
Sbjct: 51  SIAEIFARVDA------FPATHVVLTGGEPMVAKGIHELAQRFREAGKHITIETAGTIAP 104

Query: 125 PQ-GIDWICVSPKAGCDLKIKG 145
                D   +SPK G    ++G
Sbjct: 105 EGIACDLASLSPKLGNSTPLEG 126


>gi|320105235|ref|YP_004180826.1| Radical SAM domain-containing protein [Isosphaera pallida ATCC
           43644]
 gi|319752517|gb|ADV64277.1| Radical SAM domain protein [Isosphaera pallida ATCC 43644]
          Length = 293

 Score =  144 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 46/228 (20%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + E++ ++QGEG  AG   VF R + C+L           +C +CDT    +   +GG 
Sbjct: 80  RLHEVYRSIQGEGTWAGLPCVFVRLTACHL-----------RCVYCDTPHAFV-FREGGD 127

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
           + ++ +   + E    G        +TGGEPLLQ + +PL+ AL   GFE+ +ET+G+++
Sbjct: 128 FTIEAIVARVAELAEPGG----LVEVTGGEPLLQPEALPLMTALADAGFEVLLETSGSLD 183

Query: 124 PPQGIDWICVSPKAGCDLKIKG-GQELKLVFPQVN-VSPENYIGF------DFER----- 170
                  + +      DLK  G G+E   ++  ++ + P + + F      DF+      
Sbjct: 184 IAPVDRRVHI----IMDLKTPGSGEEAANLWTNLDHLKPTDNLKFVVTNRADFDWTLEIV 239

Query: 171 ----------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                       + P        +  LA          R+ +Q HK I
Sbjct: 240 RRHDLTARCPVLVSPAFDAVSPRD--LAEWILKSRLPLRMQLQLHKLI 285


>gi|150017397|ref|YP_001309651.1| radical SAM domain-containing protein [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903862|gb|ABR34695.1| Radical SAM domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 222

 Score =  144 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 52/236 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +++I E FL++ GEG  +G +A F RF GCNL           +C +CDT +   +    
Sbjct: 1   MFNIIEKFLSIDGEGPTSGELATFIRFQGCNL-----------RCSWCDTTYSWDKENTS 49

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALN-KRGFEIAVETNG 120
                +++   I+E  +T         LTGGEPL+Q ++  L+  LN     ++ +ETNG
Sbjct: 50  EVLTAEEIYKYIKENKVT------NVTLTGGEPLIQKNIHELLGLLNSDDNLKVHIETNG 103

Query: 121 TI--------EPPQGIDWICVSPKAGCDLKIKGGQ-------ELKLVFPQVNVSPENYIG 165
            +             I +I V  K      +           E   V+  V  S E+ + 
Sbjct: 104 AVNIGTFKNKFINNNISYI-VDFKLPSSNMMDRMDLNNLSIVESNDVYKFVIGSKED-LQ 161

Query: 166 FDFERF-----------SLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
             +E              L P+ G          + +       K RL VQ HK I
Sbjct: 162 IAYEIICKHNLTSKCFVYLSPVSGNIE---MQEIVEFMKDKKLNKVRLQVQLHKII 214


>gi|93005554|ref|YP_579991.1| radical SAM family protein [Psychrobacter cryohalolentis K5]
 gi|92393232|gb|ABE74507.1| Radical SAM [Psychrobacter cryohalolentis K5]
          Length = 244

 Score =  144 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 87/244 (35%), Gaps = 65/244 (26%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + EIF +LQGE  ++G   +F R +GC L           +C +CDT++     + G 
Sbjct: 20  LRLTEIFYSLQGEALNSGLPTIFVRLTGCPL-----------RCVYCDTEYAF---SGGE 65

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R +++ +   I           +   LTGGEPL Q + + L++ L   G+EI++ET G +
Sbjct: 66  RQSLETIMATI------ASFPCKRICLTGGEPLAQPNAIELMKRLLNEGYEISLETAGAL 119

Query: 123 EPPQGIDWICVSP--KAGCDLKIKGGQELKLV----------FPQVNVSPENYIGFDFER 170
                     V P      DLK     E+               Q+     N   +D+ +
Sbjct: 120 TVEN------VPPAVSKVMDLKTPSSGEVDKNLWSNLDYLTQHDQIKFVIMNRTDYDWAK 173

Query: 171 FSL--------------QPMDGPFLEE------------NTNLAISYCFQNPKWRLSVQT 204
             L               PM     E+               LA          R  +Q 
Sbjct: 174 AKLIDYKLNDLVGTVWFSPMFNVAHEDTANDNSPEVPVLARELAEWMLTDALPVRFQLQL 233

Query: 205 HKFI 208
           HK I
Sbjct: 234 HKII 237


>gi|326569745|gb|EGE19795.1| radical SAM superfamily protein [Moraxella catarrhalis BC8]
          Length = 238

 Score =  144 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 47/232 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + EIF +LQGE   AG   +F R +GC L           +C +CDT +     + G 
Sbjct: 20  LKLTEIFYSLQGEALTAGLPTIFIRLTGCPL-----------RCHYCDTTYSF---SGGE 65

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R+ +D +   I +             +TGGEPL Q + + L+  L + G+E+++ET G +
Sbjct: 66  RWGLDDIMTHIAQ------YPCWRVCVTGGEPLAQPNAITLMHKLIQSGYEVSLETAGAL 119

Query: 123 EPPQGIDWIC-----VSPKAGCDLK--------IKGGQELKLVFPQV-------NVSPEN 162
                   +       SP +G   K        +    ++K+V           N+  ++
Sbjct: 120 SVANVPPLVSKVMDLKSPSSGEADKNLWENLAHLTLHDQIKIVIANRTDYEWAKNIITKH 179

Query: 163 YIGFDFERFSLQPMDG------PFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
            +        L PM           +  T+LA          R  +Q HK I
Sbjct: 180 ALDDKVGTIWLSPMFNIQENTSHAPKLATDLAEWILKDALPVRFGLQLHKII 231


>gi|239906320|ref|YP_002953061.1| hypothetical protein DMR_16840 [Desulfovibrio magneticus RS-1]
 gi|239796186|dbj|BAH75175.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 210

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 84/228 (36%), Gaps = 48/228 (21%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + EIF ++QGE  +AG    F R SGCNL            CR+CDT         G
Sbjct: 1   MLKVHEIFASIQGESSYAGWPCGFLRLSGCNL-----------ACRWCDTLHA------G 43

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
             Y    +AD        G        +TGGEPLL    P L++ L      + VETNG+
Sbjct: 44  DSYAEMTVADATAALAGLGL---PLVEVTGGEPLLAPQTPELVKRLCDLDLTVLVETNGS 100

Query: 122 IEP-------PQGIDWICVSPKAGCDL--------KIKGGQELKLVFPQVNVSPENYIGF 166
            +           +D  C  P +G +         +++   E+K V    + +  ++   
Sbjct: 101 FDIAVLDARATAVVDVKC--PGSGMEHRNDYGNLERLRPHDEVKFVL--ADRTDYDFALD 156

Query: 167 DFERFS------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
              R          P+          LA        + RL +Q HK I
Sbjct: 157 IASRIWRTHIVHFSPVAATLASA--ELAAWMVADRVQARLGLQLHKHI 202


>gi|108763752|ref|YP_628748.1| radical SAM domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108467632|gb|ABF92817.1| radical SAM domain protein [Myxococcus xanthus DK 1622]
          Length = 230

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 91/225 (40%), Gaps = 47/225 (20%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           +KEI+L++QGE  HAG +  F R +GC+L           +C +CD++F    G +    
Sbjct: 21  VKEIYLSVQGESSHAGLLCAFIRLTGCHL-----------RCTYCDSEFAFHGGAR---- 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE- 123
              ++AD++ E             +TGGEPLLQ  V PL++AL   GF++ +ET+G I+ 
Sbjct: 66  --RKIADIVSEVRGL---RTPMVEVTGGEPLLQPGVYPLMEALLDAGFKVLLETSGAIDV 120

Query: 124 --PPQG----IDWICVSPKAGCDLKIKG------GQELKLVFPQVNVSPENY---IGFDF 168
              P      +D    S         +         ELK V      S E+Y        
Sbjct: 121 RLVPPAVHKIVDMKTPSSGEHLRNDYRNFTSMNANDELKFVIG----SREDYDWAKALIA 176

Query: 169 ERFSLQPMDGPFLEEN------TNLAISYCFQNPKWRLSVQTHKF 207
           E   LQ   G              LA          R  +Q HK+
Sbjct: 177 EHQLLQKPYGSLFSTVFDKLHPRELAEWVIEDRLAVRFQLQMHKY 221


>gi|168180208|ref|ZP_02614872.1| radical SAM domain protein [Clostridium botulinum NCTC 2916]
 gi|182669011|gb|EDT80987.1| radical SAM domain protein [Clostridium botulinum NCTC 2916]
          Length = 221

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 48/232 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + E F+++ GEG   G++A+F RF+GCNL            C +CDT +   +     
Sbjct: 3   FKVVERFVSINGEGRCCGQLAIFIRFAGCNL-----------NCSYCDTLWANEKDVSYE 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVETNGT 121
             +   + + ++       KE +   LTGGEPLLQ  +  L++ L   +   + +ETNG+
Sbjct: 52  VLSSKDIYEYVKS------KEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQ-ELKLVFPQVN-VSPENYIGF------------- 166
           I   + ++ I  SP    D K+     E K+       ++ ++ + F             
Sbjct: 106 ILLDEFLN-IENSPSFTMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLEKARE 164

Query: 167 --------DFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
                   D     + P+ G     N +  + +   N      L +Q HK I
Sbjct: 165 IINKYNLVDKTNVYISPVFGKI---NLDTIVEFMKNNRMNGVNLQLQLHKII 213


>gi|209551071|ref|YP_002282988.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209536827|gb|ACI56762.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 242

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 85/241 (35%), Gaps = 49/241 (20%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +   I EIF  T+QGEG   G   VF R  GC+            +C +CD+    +   
Sbjct: 4   ETIRISEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDSLHA-VDSA 51

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
              ++    +  + ++             L+GG P +Q   PLI+  + +G+  A+ET G
Sbjct: 52  FRDQWLPMSVEAVWQQVTKLSGGRPLTVSLSGGNPAIQPLGPLIEFGHSQGYRFALETQG 111

Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELK----------------LVFPQVNVSPEN 162
           ++  +  + +D + +SPK      +    E+                 +VF   + +   
Sbjct: 112 SVARDWFRDLDMLVLSPKPPSSGMLTDWDEVDNCLRLAAGGPDIVLKIVVFDDADYAFAR 171

Query: 163 YIGFDFERF--SLQPMDGPFLEENTNLA---ISYCFQNPKW-------------RLSVQT 204
             G  +      LQP +      + + A   I        W             R+  Q 
Sbjct: 172 EAGERYPAIPLFLQPGNHTPPPPDDDDARIDIDGVMDRMHWLVEKVTADRWYAPRVLPQL 231

Query: 205 H 205
           H
Sbjct: 232 H 232


>gi|262368582|ref|ZP_06061911.1| radical SAM domain-containing protein [Acinetobacter johnsonii
           SH046]
 gi|262316260|gb|EEY97298.1| radical SAM domain-containing protein [Acinetobacter johnsonii
           SH046]
          Length = 236

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 96/238 (40%), Gaps = 59/238 (24%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE   +G   VF R +GC L           +C +CDT +       G 
Sbjct: 18  LRITEIFYSLQGEANTSGLPTVFIRLTGCPL-----------RCTYCDTTYSF---EGGE 63

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R ++DQ+         T + +  Y  +TGGEPL Q + +PL+Q L   G E+++ET+G +
Sbjct: 64  RQSLDQIIQ------TTLDFKTPYVCVTGGEPLAQPNALPLMQRLADLGCEVSLETSGAL 117

Query: 123 EPPQGIDWICVSPKAG--CDLKIKGGQEL-KLVFPQVN-VSPENYIGF------DFERFS 172
           +  +      V P+     DLK     E+ + +   ++ ++  + I F      D+E   
Sbjct: 118 DVSK------VDPRVSKVLDLKTPTSGEVARNLLSNLDHLTQHDQIKFVICNREDYEWSK 171

Query: 173 LQPMDGPFLEE----------------------NTNLAISYCFQNPKWRLSVQTHKFI 208
            Q  D    E+                        +LA      +      +Q HK +
Sbjct: 172 QQVEDYKLNEKVSTVWFSPAFAVEKGAARLPQLARDLAQWILEDHLPVCFQLQLHKLL 229


>gi|325107837|ref|YP_004268905.1| radical SAM protein [Planctomyces brasiliensis DSM 5305]
 gi|324968105|gb|ADY58883.1| Radical SAM domain protein [Planctomyces brasiliensis DSM 5305]
          Length = 241

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 19/143 (13%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF ++QGEG + G  +VF R SGCNL           +C FCDT +      +G   
Sbjct: 18  ISEIFASIQGEGCYTGTPSVFVRTSGCNL-----------RCHFCDTPYASW-NPEGETL 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEP 124
           ++  +   + E W        + VLTGGEP++ +    L  AL ++   I +ET GT+  
Sbjct: 66  SIADIVARVNEWW------HPHVVLTGGEPMMVRDLAELTSALKRQDRFITIETAGTVYQ 119

Query: 125 PQGIDWICVSPKAGCDLKIKGGQ 147
               D + +SPK           
Sbjct: 120 DIEADLMSISPKRANSTPTDHPD 142


>gi|255320799|ref|ZP_05361974.1| organic radical activating enzyme [Acinetobacter radioresistens
           SK82]
 gi|255302176|gb|EET81418.1| organic radical activating enzyme [Acinetobacter radioresistens
           SK82]
          Length = 236

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 84/238 (35%), Gaps = 59/238 (24%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE   AG   VF R +GC L           +C +CDT +       G 
Sbjct: 18  LRITEIFYSLQGEANAAGLPTVFIRLTGCPL-----------RCTYCDTTYSF---EGGV 63

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R +++++                Y  +TGGEPL Q + + L+Q L   G ++++ET+G +
Sbjct: 64  RQSLEEIIA------TARSYNTPYICVTGGEPLAQPNCLVLLQRLCDLGHKVSLETSGAL 117

Query: 123 EPPQGIDWICVSPKAG--CDLKIKGGQEL-----------------KLVFPQVNV---SP 160
           +  +      V P+     DLK     E+                 K V    +    + 
Sbjct: 118 DVSK------VDPRVSKVLDLKTPNSGEVTRNLMSNLEFLTSNDQIKFVICNRDDYQWAK 171

Query: 161 ENYIGFDFER----FSLQPMDGPFLEENT------NLAISYCFQNPKWRLSVQTHKFI 208
           E    +  E+        P                 LA          R  +Q HK +
Sbjct: 172 EQLALYSLEQKVSTVWFSPAFAVEKGAAQLPKLARELAQWILDDQLPVRFQLQLHKLL 229


>gi|262379425|ref|ZP_06072581.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Acinetobacter
           radioresistens SH164]
 gi|262298882|gb|EEY86795.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Acinetobacter
           radioresistens SH164]
          Length = 236

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 84/238 (35%), Gaps = 59/238 (24%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE   AG   VF R +GC L           +C +CDT +       G 
Sbjct: 18  LRITEIFYSLQGEANAAGLPTVFIRLTGCPL-----------RCTYCDTTYSF---EGGV 63

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R +++++                Y  +TGGEPL Q + + L+Q L   G ++++ET+G +
Sbjct: 64  RQSLEEIIA------TARSYNTPYICVTGGEPLAQPNCLVLLQRLCDLGHKVSLETSGAL 117

Query: 123 EPPQGIDWICVSPKAG--CDLKIKGGQEL-----------------KLVFPQVNV---SP 160
           +  +      V P+     DLK     E+                 K V    +    + 
Sbjct: 118 DVSK------VDPRVSKVLDLKTPSSGEVTRNLMSNLEFLTSNDQIKFVICNRDDYQWAK 171

Query: 161 ENYIGFDFER----FSLQPMDGPFLEENT------NLAISYCFQNPKWRLSVQTHKFI 208
           E    +  E+        P                 LA          R  +Q HK +
Sbjct: 172 EQLALYSLEQKVSTVWFSPAFAVEKGAAQLPKLARELAQWILDDQLPVRFQLQLHKLL 229


>gi|307594720|ref|YP_003901037.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM
           14429]
 gi|307549921|gb|ADN49986.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 220

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 87/198 (43%), Gaps = 43/198 (21%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK   + EIF + QGEG +AGR AVF R + CNL           +C +CDT +    GT
Sbjct: 1   MKSVRVIEIFKSWQGEGPNAGREAVFLRLALCNL-----------RCSWCDTKYSWFGGT 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVET 118
           +   ++       + E  +      R+ V+TGGEPLL     + L++ +  +GF + VET
Sbjct: 50  EMNVHD-------VYEVLMKTAGGVRHLVVTGGEPLLWSRELLQLLRFIRAQGFFVEVET 102

Query: 119 NGTIEPPQGIDWI---CVSPKAGC---------------DLKIKGGQELKLVFPQVNVSP 160
           NGT+ P + ++++    VSPK                  D  + G    K V  +     
Sbjct: 103 NGTLRPGELVNYVDEFNVSPKLSNSGVSVRVRVNELAIRDFVMSGKAIFKFVVDKPGDVD 162

Query: 161 E-----NYIGFDFERFSL 173
           E     N  G   +R  L
Sbjct: 163 EVLWFINKFGIPRDRVYL 180


>gi|258516745|ref|YP_003192967.1| Radical SAM domain-containing protein [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257780450|gb|ACV64344.1| Radical SAM domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 211

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 92/227 (40%), Gaps = 48/227 (21%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + EIF +LQGEG  AG   VF R +GCNL           +C +CDT +      +G  
Sbjct: 2   KVNEIFYSLQGEGITAGYPTVFIRLTGCNL-----------RCLYCDTVYAY---EEGQE 47

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
            +V  +AD + E          Y  +TGGEPL Q     +       + + +ETNG++  
Sbjct: 48  MSVKDVADRVHE------YGAHYVCITGGEPLQQKAELKLLLSLLNRYTVTIETNGSLSL 101

Query: 125 PQ--------GIDWICVSPKAGCDLK--------IKGGQELKLVFPQVNVSPENYIGFDF 168
                      +D     P +G  L         ++   E+K +    + +  ++     
Sbjct: 102 EDLSFNYCHFAMDIKT--PGSGMHLYNDFSNIEFLRSKDEIKFII--GSRTDYDFARGII 157

Query: 169 ERFSL-QPM----DGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
           E++ L Q +       F  E   LA  +  ++     R+ +Q HK+I
Sbjct: 158 EKYKLAQKVIVTFSPVFGLEPRFLA-QWVLEDKLFFVRVQLQIHKYI 203


>gi|157273449|gb|ABV27348.1| radical SAM domain protein [Candidatus Chloracidobacterium
           thermophilum]
          Length = 210

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 90/223 (40%), Gaps = 41/223 (18%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            I EIF ++QGE  +AG    F R +GC+L           +C +CD+++    GT    
Sbjct: 2   RITEIFFSIQGESSYAGLPCAFVRTTGCDL-----------RCTWCDSEYTFTGGTH--- 47

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
            +V+++ + +           R   LTGGEPLLQ D+  L + L + G+ + +ET G  +
Sbjct: 48  MSVEEILERVRA------YPTRLVELTGGEPLLQKDIYELSERLLEEGYTVLIETGGHRD 101

Query: 124 PPQG-------IDWICVSPKAGCDLK--------IKGGQELKLVFPQVNV---SPENYIG 165
             +        +D  C  P +G   K        I    E+K V   +N    + E    
Sbjct: 102 VSRLDPRIVKILDIKC--PGSGMVEKNLWSNLDYITRRDEVKFVLADLNDYFWAREILRI 159

Query: 166 FDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           +  E+ +       F  E   +         + R   Q HK I
Sbjct: 160 YRLEQRTNVLFSTVFGVERRPIVERILADGLQVRFQTQLHKLI 202


>gi|119871554|ref|YP_929561.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM
           4184]
 gi|119672962|gb|ABL87218.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 216

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 41/200 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK + + EIF +LQGEG + G+ AVF R +GC             +CR+CDT +      
Sbjct: 1   MK-FRVVEIFASLQGEGVNLGKPAVFIRLAGCP-----------IRCRYCDTKYSW-DPL 47

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
            G   + +++          G     + V+TGGEPL+  ++  L   L + G  + VET+
Sbjct: 48  GGVEIDAEEVVQRAAAYGQLG-----HVVITGGEPLIWRNLHELACPLRRLG-TVEVETS 101

Query: 120 GTIEPPQ----GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
           G   P       +D+  VSPK      +   +   L+ P    SP+ +  F         
Sbjct: 102 GVYPPTPQLDACVDFYDVSPK------LSNARVDALLHPHYPRSPKAWFKFV-------- 147

Query: 176 MDGPFLEENTNLAISYCFQN 195
                 EE+   A+ Y  ++
Sbjct: 148 ---VGGEEDVEEAVRYVEKH 164


>gi|124027076|ref|YP_001012396.1| organic radical activating protein NrdG [Hyperthermus butylicus DSM
           5456]
 gi|123977770|gb|ABM80051.1| Organic radical activating enzyme, NrdG [Hyperthermus butylicus DSM
           5456]
          Length = 235

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 26/152 (17%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
            +  + E+F ++QGEG   G  +VF R +GCNL           +C FCDT +       
Sbjct: 14  TVLRVVEVFASIQGEGPFTGTYSVFVRLAGCNL-----------RCPFCDTRYAWSL-EA 61

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETN 119
           G    V++L + I         E    V+TGGEPLLQ      L++ L   G  + +ETN
Sbjct: 62  GKPLGVEELVEEIAR------YEPSLVVITGGEPLLQRHPLNSLVEGLESLGLRVQLETN 115

Query: 120 GTIEPPQGIDWI-----CVSPKAGCDLKIKGG 146
           G +  P   + +      VSPK    +++ G 
Sbjct: 116 GILPAPARDEQLWRVYHVVSPK-DVPVRVPGA 146


>gi|303242851|ref|ZP_07329315.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
 gi|302589597|gb|EFL59381.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
          Length = 209

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 88/235 (37%), Gaps = 68/235 (28%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIFL++QGE    G   +F RF+GCNL           +C +CDT +    G +   Y
Sbjct: 3   VNEIFLSIQGESISTGFPTIFVRFTGCNL-----------RCCYCDTTYAYEDGKEMSPY 51

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP 124
            V +                +   +TGGEPLLQ D+  L++ L    + + +ETNG +  
Sbjct: 52  EVFE---------EVKRFHYKRVCITGGEPLLQKDLNELLRLLGD--YAVTIETNGAVPI 100

Query: 125 P-----QGIDWICVSPKAGCDLKIKGG-----------------QELKLVFPQVN----- 157
                 +G  W+        D+K+                     E+K V    N     
Sbjct: 101 EDITLCEGHSWV-------MDMKVPSSGCSNQMVLDNFRYLRDKDEIKFVIGDRNDYDWA 153

Query: 158 ---VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFI 208
              +   +Y G      +  P+ G     N   A+S+        R  VQ HK I
Sbjct: 154 KGIIKNHHYKG----TITFSPVYGRI---NCEDAVSWILADRLDVRFQVQLHKII 201


>gi|71065297|ref|YP_264024.1| radical activating enzyme [Psychrobacter arcticus 273-4]
 gi|71038282|gb|AAZ18590.1| probable radical activating enzyme [Psychrobacter arcticus 273-4]
          Length = 244

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 86/242 (35%), Gaps = 61/242 (25%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + EIF +LQGE   +G   +F R +GC L           +C +CDT++     + G 
Sbjct: 20  LRLTEIFYSLQGEALTSGLPTIFVRLTGCPL-----------RCVYCDTEYAF---SGGE 65

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R +++ +   I           +   LTGGEPL Q + + L++ L   G+EI++ET G +
Sbjct: 66  RQSLETMMATI------ASFPCKRICLTGGEPLAQPNAIELMKRLLNDGYEISLETAGAL 119

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLV----------FPQVNVSPENYIGFDFERFS 172
                   +  +     DLK     E+               Q+     N   +D+ +  
Sbjct: 120 TVEN----VPPTVSKVMDLKTPSSGEVDKNLWSNLDYLTQHDQIKFVIMNRADYDWAKAK 175

Query: 173 L--------------QPMDGPFLEE------------NTNLAISYCFQNPKWRLSVQTHK 206
           L               PM     E+               LA          R  +Q HK
Sbjct: 176 LVEYKLNELVGTVWFSPMFNVAHEDTVNDNSPEVPVLARELAEWMLADALPVRFQLQLHK 235

Query: 207 FI 208
            I
Sbjct: 236 II 237


>gi|164686487|ref|ZP_02210515.1| hypothetical protein CLOBAR_00052 [Clostridium bartlettii DSM
           16795]
 gi|164604498|gb|EDQ97963.1| hypothetical protein CLOBAR_00052 [Clostridium bartlettii DSM
           16795]
          Length = 220

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 88/229 (38%), Gaps = 40/229 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +++I E F+++ GEG  AG +A F RF GCNL           +C +CDT +   +    
Sbjct: 1   MFNIIEKFVSIDGEGPTAGELATFIRFQGCNL-----------RCSWCDTTYSFDKSEIT 49

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN--KRGFEIAVETNG 120
              +  ++ D I+   ++         LTGGEPL Q ++  + +L    +   + +ETNG
Sbjct: 50  EVLSAQEIYDYIKSTGVS------NVTLTGGEPLFQENINEVLSLLNDDKNLVVHIETNG 103

Query: 121 TIEPPQG----------IDWICVSPKAGCDLKIKGGQEL------KLVFPQVNVSPENYI 164
            I+              +D+   S      +K+     +      K V        E Y 
Sbjct: 104 AIDILPFKEKYPNIIFILDYKLASSNMTHLMKLDNLNYVTNKDVYKFVLGSDEDLQEAYE 163

Query: 165 ---GFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
               F+     L      F        + +  +    K RL VQ HK I
Sbjct: 164 LITKFNLTNKCLVYFSPVFSAIKLEDIVEFMKEKNLNKVRLQVQLHKVI 212


>gi|299769138|ref|YP_003731164.1| Radical SAM superfamily protein [Acinetobacter sp. DR1]
 gi|298699226|gb|ADI89791.1| Radical SAM superfamily protein [Acinetobacter sp. DR1]
          Length = 236

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 59/238 (24%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE   +G   VF R +GC L           +C +CDT +       G 
Sbjct: 18  LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R++++ + +   +       +  Y  +TGGEPL Q + + L+Q L + GF++++ET+G +
Sbjct: 64  RFSLEHIIETATQ------YQTPYICVTGGEPLAQPNCLILLQRLCEAGFDVSLETSGAL 117

Query: 123 EPPQGIDWICVSPKAGCDLKIK-GGQELKLVFPQVN-VSPENYIGF-------------D 167
           +  +    +        DLK    G+E + +   ++ ++  + I F              
Sbjct: 118 DVSKVDSRVS----KVLDLKTPTSGEEHRNLISNLDHLTAHDQIKFVICNREDYEWSKQQ 173

Query: 168 FERFSL---------QP--------MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
            E++ L          P        +  P L  +  LA          R  +Q HK +
Sbjct: 174 VEKYQLHKKVSTVWFSPAFAVEKGAVSLPRLARD--LAQWILDDKLLVRFQLQLHKLL 229


>gi|327189839|gb|EGE56977.1| organic-radical-activating protein [Rhizobium etli CNPAF512]
          Length = 242

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 83/241 (34%), Gaps = 49/241 (20%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +   + EIF  T+QGEG   G   VF R  GC+            +C +CD+    +   
Sbjct: 4   ESIRVSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDSLHA-VDSA 51

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
              ++       + +E             L+GG P +Q   PLI+  + +G+  A+ET G
Sbjct: 52  FREQWIPMSTEAIWQEVTKLSAGRPMTVSLSGGNPAIQPLGPLIEFGHSQGYRFALETQG 111

Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELK----------------LVFPQVNVSPEN 162
           +I     + +D + +SPK      +    ++                 +VF   + +   
Sbjct: 112 SIARNWFRDLDVLVLSPKPPSSGMLTDWDQVDNCLRLAAGGPEIALKIVVFDDDDYAFAR 171

Query: 163 YIGFDFERF--SLQPMDGPFLEENTNLA---ISYCFQNPKW-------------RLSVQT 204
             G  +      LQP +      + + A   I        W             R+  Q 
Sbjct: 172 EAGRRYPYIPLYLQPGNHTPPPPDDDDARIDIDGVMDRMHWLVEKVTADGWFAPRVLPQL 231

Query: 205 H 205
           H
Sbjct: 232 H 232


>gi|307943818|ref|ZP_07659162.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Roseibium sp. TrichSKD4]
 gi|307773448|gb|EFO32665.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Roseibium sp. TrichSKD4]
          Length = 247

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 79/221 (35%), Gaps = 36/221 (16%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           K   I EIF  T+QGEG   G+  VF R  GC+            +C +CDT    +   
Sbjct: 9   KSIRISEIFGPTIQGEGALVGKPTVFVRTGGCDY-----------RCSWCDTLHA-VDAE 56

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
               +     A++  +             L+GG P +Q    LI     +G+  A+ET G
Sbjct: 57  YRHDWTPMSAAEIFTKVEELSGGIPLTVSLSGGNPAIQPLASLITLGKAKGYAFALETQG 116

Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKL------VFPQVNVSPE--NYIGFDFER 170
           ++  +    +D + +SPK            L        V  Q+ +     +   + F R
Sbjct: 117 SVVKDWFAELDVLTLSPKPPSSGMKTDLAALDACVSAGGVATQIALKFAVMDEADYAFAR 176

Query: 171 ----------FSLQPMDGPFLEENTNLA---ISYCFQNPKW 198
                       LQP++      +T  A   +S      +W
Sbjct: 177 QISTRHPALPVYLQPVNHTPPPPDTEDADIDMSGIMDRMRW 217


>gi|251798291|ref|YP_003013022.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Paenibacillus sp. JDR-2]
 gi|247545917|gb|ACT02936.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Paenibacillus sp. JDR-2]
          Length = 242

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 90/241 (37%), Gaps = 49/241 (20%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           K   + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    GT
Sbjct: 4   KRIPVMEIFGPTVQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGT 51

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
                 +   ++++ E    G     +  L+GG P LL+    L+ AL++ G  +AVET 
Sbjct: 52  GKDDTRMLTASEIVGELRELGGNTFSHVTLSGGNPALLKNADELVDALHRDGVRVAVETQ 111

Query: 120 GTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-----------VNVSPENYIGF 166
           G+   +    ID + +SPK          + L  +  +           V V  E  + +
Sbjct: 112 GSRWQDWLLAIDELTLSPKPPSSGMTTNWEVLDEIVARLAGGSNPFSLKVVVFDEQDLAY 171

Query: 167 DFE--------RFSLQP-----MDGPFLEENTNLA------ISYCFQNP---KWRLSVQT 204
             +         F +Q      ++G   +    L       I    +       R+  Q 
Sbjct: 172 AAKVHNRYPGVTFFVQTGNDDLIEGDNGKLAAKLIERYEWLIDQVMKREDMTNVRVLPQL 231

Query: 205 H 205
           H
Sbjct: 232 H 232


>gi|190893559|ref|YP_001980101.1| organic-radical-activating protein [Rhizobium etli CIAT 652]
 gi|190698838|gb|ACE92923.1| organic-radical-activating protein [Rhizobium etli CIAT 652]
          Length = 242

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 83/241 (34%), Gaps = 49/241 (20%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +   + EIF  T+QGEG   G   VF R  GC+            +C +CD+    +   
Sbjct: 4   ETIRVSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDSLHA-VDSA 51

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
              ++       + +E             L+GG P +Q   PLI+  + +G+  A+ET G
Sbjct: 52  FRDQWIPMSTEAIWQEVTKLSAGRPMTVSLSGGNPAIQPLGPLIELGHSQGYRFALETQG 111

Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELK----------------LVFPQVNVSPEN 162
           ++     + +D + +SPK      +    ++                 +VF   + +   
Sbjct: 112 SVARNWFRDLDVLVLSPKPPSSGMLTDWDQVDNCLRLAAGGPEIALKIVVFDDDDYAFAQ 171

Query: 163 YIGFDFERF--SLQPMDGPFLEENTNLA---ISYCFQNPKW-------------RLSVQT 204
             G  +      LQP +      + + A   I        W             R+  Q 
Sbjct: 172 EAGQRYPYIPLYLQPGNHTPPPPDDDDARIDIDGVMDRMHWLVEKVTADGWFAPRVLPQL 231

Query: 205 H 205
           H
Sbjct: 232 H 232


>gi|302342762|ref|YP_003807291.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075]
 gi|301639375|gb|ADK84697.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075]
          Length = 212

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 88/228 (38%), Gaps = 46/228 (20%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + EIF ++QGEG  AG    F R +GC L           +C +CDT +    G   
Sbjct: 1   MLEVCEIFQSIQGEGVDAGLPCAFVRLAGCPL-----------RCAWCDTAYAWQGG--- 46

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
                  L +++         E     LTGGEPL Q + P L+ AL   G  + VET+G 
Sbjct: 47  ---AAMSLPEVLARALA---FELELVELTGGEPLAQAETPALLGALCDAGRRVLVETSGA 100

Query: 122 IE-------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
           ++           +D  C  P +G   +++    L ++ P   V        D+E F+ +
Sbjct: 101 LDIAVVDERVHLIMDVKC--PGSGMSERMRWRN-LDILPPGAQVKFVLADRADYE-FARR 156

Query: 175 PMDGPFL-EENTNL------------AISYCFQ-NPKWRLSVQTHKFI 208
            +D   L      L             + +        R  +Q HKFI
Sbjct: 157 VIDAHGLGHRARPLLSVVHGRLAPAKVVEWMLADRLPARFQLQLHKFI 204


>gi|261405277|ref|YP_003241518.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Paenibacillus sp. Y412MC10]
 gi|261281740|gb|ACX63711.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Paenibacillus sp. Y412MC10]
          Length = 243

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 16/161 (9%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G+  
Sbjct: 5   IPVMEIFGPTVQGEGMVVGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAK 52

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121
              ++    ++ +E +  G +   +  L+GG P LL     L+  L++ G  +AVET G+
Sbjct: 53  DSISLLSADEIWQELYRLGGERFDHVTLSGGNPALLPQLGALVDELHRHGITVAVETQGS 112

Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP 160
              +    ID + +SPK           +L  +  +++  P
Sbjct: 113 RWQDWLNHIDEVTISPKPPSSGMDTDWGKLDDIVSRLSARP 153


>gi|292655864|ref|YP_003535761.1| radical SAM protein [Haloferax volcanii DS2]
 gi|291371719|gb|ADE03946.1| radical SAM protein, putative (TBD) [Haloferax volcanii DS2]
          Length = 257

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 20/142 (14%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I E+F +LQGEG  AG  + F R SGCNL           +C FCD+     + T   
Sbjct: 19  LPINELFASLQGEGKLAGVPSTFVRTSGCNL-----------RCWFCDSFHTSWEPTH-A 66

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
             ++D++   +E           + V+TGGEPL+  +   L+ AL    + + VETNGT+
Sbjct: 67  WLSLDEIVAEVESL------SPEHVVVTGGEPLVHDETDALLSAL-DDDYHLTVETNGTL 119

Query: 123 EPPQGIDWICVSPKAGCDLKIK 144
           E    +D   +SPK        
Sbjct: 120 ETDAPVDLASISPKLASSTPTP 141


>gi|282889934|ref|ZP_06298469.1| hypothetical protein pah_c008o017 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500127|gb|EFB42411.1| hypothetical protein pah_c008o017 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 224

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 101/230 (43%), Gaps = 51/230 (22%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
            +I EIF ++QGE   AG    F R + CNL           +C +CDT +      +G 
Sbjct: 13  LNIIEIFSSVQGETSFAGLPTAFIRLAACNL-----------RCSWCDTSYSFG---RGD 58

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
            + + Q+ + ++E         R   +TGGEPLLQ +V PL+  L  + + ++VET G++
Sbjct: 59  VFGLPQILEKVDEFG------CRNVCVTGGEPLLQKNVYPLMTQLCDKNYIVSVETGGSL 112

Query: 123 EPPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQVN-VSPENYIGFDF---------- 168
              +      + P+    L IK        +  +P ++ + PE+ + F            
Sbjct: 113 SIEE------IDPRVHIILDIKCPDSNMSDRNFWPNLSAIRPEDEVKFVINGYQDYLYAK 166

Query: 169 ---ERFSL----QPM--DGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFI 208
              E+F L     P+     F   ++   +++  Q     RL++Q HKFI
Sbjct: 167 EVCEKFQLFSRKIPVLLSPVFDVLDSKELVNWVLQDKLPVRLNMQLHKFI 216


>gi|296122194|ref|YP_003629972.1| radical SAM protein [Planctomyces limnophilus DSM 3776]
 gi|296014534|gb|ADG67773.1| Radical SAM domain protein [Planctomyces limnophilus DSM 3776]
          Length = 260

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 62/138 (44%), Gaps = 19/138 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I E FL++QGEG   G  + F R +GCNL           +C FCDT +       G 
Sbjct: 21  LRIAETFLSVQGEGALTGVRSFFIRTTGCNL-----------RCWFCDTPYTSWTAE-GN 68

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
              +D+L                + +LTGGEPLLQ  +  L  AL   G  I VET GT+
Sbjct: 69  WQTIDELLAQATASG------AEHVILTGGEPLLQPAIVELSHALKAAGLHITVETAGTV 122

Query: 123 EPPQGIDWICVSPKAGCD 140
           + P   D + +SPK    
Sbjct: 123 DRPVMADLMSISPKLANS 140


>gi|281358520|ref|ZP_06245000.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
 gi|281315002|gb|EFA99035.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
          Length = 214

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 95/230 (41%), Gaps = 47/230 (20%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + E FL+LQGE  HAGR  +F R +GCNL            C +CDT +       G
Sbjct: 1   MPRLVEAFLSLQGESTHAGRRCIFLRLAGCNL-----------DCNYCDTMYA-HSPESG 48

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
              +VD+L               R   +TGGEPLL  + P L + L   GFE+ +ETNG+
Sbjct: 49  EERSVDELVAA------AASFPCRLVEITGGEPLLTPETPELCRRLLALGFEVLIETNGS 102

Query: 122 IEPPQGIDWICVSPKAGCDLKIKG-GQELKLVFPQ-VNVSPENYIGF------DFERFSL 173
           +        +    +   D K+ G G   + ++     + P + + F      DF+ F+L
Sbjct: 103 LPIAPLPAEV----RKILDCKLPGSGMSNRNLYDNYALLQPHDEVKFVVSSREDFD-FAL 157

Query: 174 QPMDGPFLEENTN-LAISYCFQN------PKW--------RLSVQTHKFI 208
             +    L   T  L  S  +         +W        R+ +Q HK I
Sbjct: 158 DVIRRYDLPGKTANLLFSPVWGRVGFADLARWIVDAGAPGRMQLQLHKLI 207


>gi|291550955|emb|CBL27217.1| Organic radical activating enzymes [Ruminococcus torques L2-14]
          Length = 216

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 87/230 (37%), Gaps = 49/230 (21%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + E F ++ GEG  AG +AVF RF GCNL           +C +CDT +      +   
Sbjct: 2   KVVEKFTSINGEGTRAGELAVFIRFKGCNL-----------RCSYCDTMWANEPDCQYKE 50

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
              +++ + + E  I      R   LTGGEPLLQ D+  LI  L + G ++ +ETNG ++
Sbjct: 51  ETPEEILNYVLETGI------RNVTLTGGEPLLQKDIRELIHLLLQAGLQVEIETNGAVD 104

Query: 124 PPQGIDWICVSPKAGCDLKIKGG-----------------QELKLV------FPQVNVSP 160
                +     P    D K+                      +K V        +     
Sbjct: 105 LSAFCEE---RPVFTMDYKLPSSGCEEYMITENMELLGKDDTVKFVCGSQEDLLKALDVI 161

Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
           + Y   +     L P+ G          + +  ++      L +Q HK I
Sbjct: 162 QTYNLTNRCHVYLSPVFGSIEP---VQIVEFMLKHQLNGVCLQIQMHKVI 208


>gi|237737359|ref|ZP_04567840.1| radical SAM domain-containing protein [Fusobacterium mortiferum
           ATCC 9817]
 gi|229421221|gb|EEO36268.1| radical SAM domain-containing protein [Fusobacterium mortiferum
           ATCC 9817]
          Length = 222

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 86/236 (36%), Gaps = 50/236 (21%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  + + EIF ++ GEG   G++A+F R   CNL            C +CDT +      
Sbjct: 1   MANFKVVEIFESINGEGRRVGQLAIFIRLQKCNL-----------NCSYCDTRWANGDDA 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG----FEIAV 116
                + D++ D I +  I      +   LTGGEPLL  DV ++  L K G      + +
Sbjct: 50  PYTLMSEDKIYDRILKSGI------KNITLTGGEPLLHKDVEIL--LEKIGENPNLSLEI 101

Query: 117 ETNGTI----------EPPQGIDWICVSPKAGCDLKIKG------GQELKLVF------P 154
           ETNG+I           P   +D+   S K    + +           +K V        
Sbjct: 102 ETNGSIELEKFSKLKNPPLFTMDYKLPSSKMENKMCLDNFKYLTLKDTVKFVVGTIEDLK 161

Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
           +     E Y           P+            + +  +N      L +Q HKFI
Sbjct: 162 KAKEIIERYSLIGKCAVYFSPVFNSIDP---IEIVKFMKENRLNGVNLQLQIHKFI 214


>gi|56476931|ref|YP_158520.1| radical activating enzyme [Aromatoleum aromaticum EbN1]
 gi|56312974|emb|CAI07619.1| SAM radical family enzyme similar to queE gene product; involved in
           queuosine biosynthesis [Aromatoleum aromaticum EbN1]
          Length = 221

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 83/230 (36%), Gaps = 54/230 (23%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + EIF +LQGE    G   VF R +GC L           +C +CDT++    G     
Sbjct: 13  RLTEIFASLQGESTRVGLPTVFVRLTGCPL-----------RCVWCDTEYAFQGGES--- 58

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
                +A ++EE    G     +  +TGGEPL Q   + L+ AL   G  +++ET+G + 
Sbjct: 59  ---RSIASIVEEVLGHG---IEHVCVTGGEPLAQKSCLALLAALCDAGLSVSLETSGAL- 111

Query: 124 PPQGIDWICVSPKAG--CDLKIKGG-----------------QELKLV------FPQVNV 158
                D   V P+     DLK  G                   E+K+V      +     
Sbjct: 112 -----DIAAVDPRVSRVMDLKAPGSGEVARNRWDNLARLNERDEVKIVLADRLDYEWAVQ 166

Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
               +         L P+ G        LA          R  +Q HK +
Sbjct: 167 CLAEHRLAQRCTVLLSPVQGKLDPA--QLAEWIVRDRLPVRFQLQLHKIL 214


>gi|262278177|ref|ZP_06055962.1| radical SAM superfamily protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258528|gb|EEY77261.1| radical SAM superfamily protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 236

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 93/236 (39%), Gaps = 55/236 (23%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF +LQGE   +G   VF R +GC L           +C +CDT +       G 
Sbjct: 18  LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           R++++ + +   +       +  Y  +TGGEPL Q + + L+Q L + GF++++ET+G +
Sbjct: 64  RFSLEHIIETATQ------FQTPYICVTGGEPLAQPNCLILLQRLCEAGFDVSLETSGAL 117

Query: 123 EPPQGIDWICVSPKAGCDLKIK-GGQELKLVFPQVN-VSPENYIGF------DFE----- 169
           +  +    +        DLK    G+E + +   ++ ++  + I F      D+E     
Sbjct: 118 DVSKVDSRVS----KVLDLKTPTSGEEHRNLISNIDHLTAHDQIKFVICNREDYEWSKQQ 173

Query: 170 -----------RFSLQPMDGPFLEE------NTNLAISYCFQNPKWRLSVQTHKFI 208
                           P                +LA          R  +Q HK +
Sbjct: 174 VEIYQLHKKVSTVWFSPAFAVEKGAVGLPRLARDLAQWILDDKLPVRFQLQLHKLL 229


>gi|325678494|ref|ZP_08158109.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Ruminococcus albus 8]
 gi|324109805|gb|EGC04006.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Ruminococcus albus 8]
          Length = 222

 Score =  140 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 43/231 (18%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +L+S+ E F+++ GEG  AG +A+F RF+GC+L           +C +CDT +   +   
Sbjct: 3   QLFSLAEHFISINGEGQRAGELALFLRFTGCDL-----------RCVWCDTLWAVPKDAP 51

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
               ++  L D+  +    G    R   LTGGEPL+Q  +  L +AL   G  + +ETNG
Sbjct: 52  HKDKDLRSLLDIARDAVSHG---VRNVTLTGGEPLMQKGIVRLFEALLDMGLRVEIETNG 108

Query: 121 TIEPPQGIDWICVSPKAGCDLKIK-GGQELKLVFPQVNVSPENY-IGF------------ 166
           ++     I      P    D K+   G E +++   +++   N  + F            
Sbjct: 109 SVALAPFIRDK--RPDFNMDYKLPDSGMESRMIIDNISLLQANDTLKFVCASHRDLLRAY 166

Query: 167 -------DFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
                     +    P+ G     +    + +  +    + RL +Q HKFI
Sbjct: 167 EVIQQTKPKCKVYFSPVFGKIEPADM---VEFIKEKGLGEVRLQLQLHKFI 214


>gi|253576603|ref|ZP_04853931.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844017|gb|EES72037.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 253

 Score =  140 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 80/241 (33%), Gaps = 51/241 (21%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G+  +F R +GC+            +C +CD+ F    G+  
Sbjct: 15  IPVMEIFGPTVQGEGMVIGQKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAK 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121
                   A+++ E    G     +  L+GG P LL     L++ L+  G  +AVET G+
Sbjct: 63  EMIRRLTPAEILGELRDIGGDRFSHVTLSGGNPALLPQLASLVELLHAEGITVAVETQGS 122

Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE----------------NY 163
              +    +D + +SPK            L  +  ++   P                  Y
Sbjct: 123 RWQDWLAEVDQVTLSPKPPSSGMDTNWDVLDDIVARLAARPHPLAVSLKVVVFDDDDLAY 182

Query: 164 IGFDFERFSLQPMDG----------------PFLEENTNLAISYCFQNP---KWRLSVQT 204
                 R+   PM                    L       I      P     R+  Q 
Sbjct: 183 AKRVHTRYPNVPMYVQVGNPDVKRMDIQEHASDLLRRYEALIDKVMATPDLNNVRVLPQL 242

Query: 205 H 205
           H
Sbjct: 243 H 243


>gi|297530832|ref|YP_003672107.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. C56-T3]
 gi|297254084|gb|ADI27530.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. C56-T3]
          Length = 244

 Score =  140 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 16/162 (9%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +   + EIF  T+QGEG   G+  +F R +GC+            +CR+CD+ F    G+
Sbjct: 3   RTIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSAFTW-DGS 50

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETN 119
                      ++       G +  R+  ++GG PLL      LI  L+++G  +AVET 
Sbjct: 51  AKDEIEQLTADEIWRRLEAIGGRRFRHVTISGGNPLLIAALGELIALLHEKGMRVAVETQ 110

Query: 120 GTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
           G+   +    ID + +SPK            L  +  ++   
Sbjct: 111 GSRWQDWLLDIDDVTLSPKPPSSGMNTDWSALDQIIERLQAD 152


>gi|118592129|ref|ZP_01549523.1| organic-radical-activating protein [Stappia aggregata IAM 12614]
 gi|118435425|gb|EAV42072.1| organic-radical-activating protein [Stappia aggregata IAM 12614]
          Length = 242

 Score =  140 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 79/219 (36%), Gaps = 36/219 (16%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G+  VF R  GC+            +C +CDT    +     
Sbjct: 6   IRVSEIFGPTIQGEGALIGQPTVFVRTGGCDY-----------RCSWCDTLHA-VDSAHR 53

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +       ++ +  I          L+GG P +Q    LI    K G+  A+ET G++
Sbjct: 54  DEWCPMTPQAILMQVEILSGGNPLTVSLSGGNPAIQPLGGLITLGRKEGYRFALETQGSL 113

Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELK----------------LVFPQVNVSPENYI 164
             +    +D + +SPK          Q L                 +VF + + +    +
Sbjct: 114 AKDWFADLDVLTLSPKPPSSGMTTDWQRLAECVEAAGPETQTVLKVVVFDEADYAFARDV 173

Query: 165 GFDFERF--SLQPMD-GPFLEENTNLAISY--CFQNPKW 198
              +      LQP +  P    +T+  I      +  +W
Sbjct: 174 SDRYPHLSCFLQPGNHTPPAATDTDATIDMTGIMERMRW 212


>gi|260437277|ref|ZP_05791093.1| radical SAM domain protein [Butyrivibrio crossotus DSM 2876]
 gi|292810587|gb|EFF69792.1| radical SAM domain protein [Butyrivibrio crossotus DSM 2876]
          Length = 222

 Score =  140 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 54/235 (22%), Positives = 93/235 (39%), Gaps = 48/235 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y + E F+++ GEG  AG +A F R  GCNL            C +CDT +      
Sbjct: 1   MAEYKVVETFVSINGEGRKAGELAFFLRLKGCNL-----------DCSYCDTKWANKGDA 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE--IAVET 118
                + +++  LI++  I      R   +TGGEPL + D+ ++  L     E  + +ET
Sbjct: 50  SFEIMDENEIYGLIKKSGI------RNVTITGGEPLFRKDMAILLELLDNDRELSVEIET 103

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIK-----------------GGQELKLV---FPQVNV 158
           NG+++    +  +C +     D K+                      +K V      +  
Sbjct: 104 NGSVDLKPYL-PVCKNISFTMDYKLPTSRMEEQMCLGNFEILRNIDTVKFVSGSIKDLEK 162

Query: 159 SPENYIGFDFE---RFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
           + E    +D     +  + P+ G     +    + +  +    K RL +Q HKFI
Sbjct: 163 AEEIIQKYDLCKRTKVYISPVFGNIDPAD---IVEFMKERKMNKVRLQLQLHKFI 214


>gi|329925161|ref|ZP_08280104.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Paenibacillus sp. HGF5]
 gi|328939994|gb|EGG36327.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Paenibacillus sp. HGF5]
          Length = 264

 Score =  140 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 16/161 (9%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G+  
Sbjct: 26  IPVMEIFGPTVQGEGMVVGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAK 73

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121
              ++    ++ +E +  G +   +  L+GG P LL     L+  L++ G  +AVET G+
Sbjct: 74  DSISLLSADEIWQELYRLGGERFDHVTLSGGNPALLPQLGALVDELHRYGITVAVETQGS 133

Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP 160
              +    ID + +SPK           +L  +  +++  P
Sbjct: 134 RWQDWLNHIDEVTISPKPPSSGMDTDWGKLDDIVSRLSARP 174


>gi|328953829|ref|YP_004371163.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328454153|gb|AEB09982.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 213

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 89/231 (38%), Gaps = 54/231 (23%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + E F+++ GE   AG    F R SGCNL           +CR+CDT +   +G +  
Sbjct: 3   LRVCETFISIMGEASFAGLPGFFIRLSGCNL-----------RCRYCDTTYAYAEGVE-- 49

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
                 LA L+ E   +G    R  ++TGGEPLLQ + + L+ AL +RGF + +ETNG+ 
Sbjct: 50  ----RSLASLLGEAGASGY---RLVLVTGGEPLLQEECLVLLSALVERGFTVLLETNGSR 102

Query: 123 EPPQGIDWICVSPKAG--CDLKIKGG-----------------QELKLVFPQVNVSPENY 163
                     V P+     DLK  G                   ELK V           
Sbjct: 103 PLEA------VDPRVHRIIDLKCPGSGMAQHNYLKNLDYLTEKDELKFVVSNRRDFDWAM 156

Query: 164 IGFDFERFS------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                 R          P+ G        LA          RL++Q HK+I
Sbjct: 157 QVMAASRIWERCTVLFSPVFGLLPPS--ELAAWILATRLPLRLNLQLHKYI 205


>gi|261419199|ref|YP_003252881.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. Y412MC61]
 gi|319766015|ref|YP_004131516.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. Y412MC52]
 gi|261375656|gb|ACX78399.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. Y412MC61]
 gi|317110881|gb|ADU93373.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. Y412MC52]
          Length = 244

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 16/162 (9%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +   + EIF  T+QGEG   G+  +F R +GC+            +CR+CD+ F    G+
Sbjct: 3   RTIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSAFTW-DGS 50

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETN 119
                      ++       G +  R+  ++GG PLL      LI  L+++G  +AVET 
Sbjct: 51  AKDEIEQLTADEIWRRLEAIGGRRFRHVTISGGNPLLIAALGELIALLHEKGMRVAVETQ 110

Query: 120 GTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
           G+   +    ID + +SPK            L  +  ++   
Sbjct: 111 GSRWQDWLLDIDDVTLSPKPPSSGMDTDWSALDQIIERLQAD 152


>gi|56419512|ref|YP_146830.1| coenzyme PQQ synthesis [Geobacillus kaustophilus HTA426]
 gi|56379354|dbj|BAD75262.1| coenzyme PQQ synthesis [Geobacillus kaustophilus HTA426]
          Length = 244

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 16/162 (9%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +   + EIF  T+QGEG   G+  +F R +GC+            +CR+CD+ F    G+
Sbjct: 3   RTIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSAFTW-DGS 50

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETN 119
                      ++       G +  R+  ++GG PLL      LI  L+++G  +AVET 
Sbjct: 51  AKDEIEQLTADEIWRRLEAIGGRRFRHVTISGGNPLLIAALGELIALLHEKGMRVAVETQ 110

Query: 120 GTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
           G+   +    ID + +SPK            L  +  ++   
Sbjct: 111 GSRWQDWLLDIDDVTLSPKPPSSGMDTDWAALDQIIERLQAD 152


>gi|283853629|ref|ZP_06370864.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
 gi|283570991|gb|EFC19016.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
          Length = 211

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 88/228 (38%), Gaps = 45/228 (19%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M L  + EIF ++QGE   AG    F R SGCNL            C +CDT +      
Sbjct: 1   MSL-RVHEIFASIQGESSFAGWPCAFLRLSGCNL-----------DCVWCDTRYA----- 43

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
               +    + +       +G        LTGGEPLL  ++P L +AL   G  + VETN
Sbjct: 44  -AASFVEMTVPEAAAALLASGL---PLVELTGGEPLLAPELPALARALLDAGATVLVETN 99

Query: 120 GTIEP----PQGI---DWICVSPKAGCDL--------KIKGGQELKLVFPQVN----VSP 160
           G+ +     P+ I   D  C  P +G +         +++   E+K V    +       
Sbjct: 100 GSRDIAVLDPRAIAILDIKC--PGSGMEGRNDYRNLDRLRPRDEVKFVLAGRDDYRFALD 157

Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                +D     L P+ G        LA        + RL +Q HK I
Sbjct: 158 VAKRVWDRHTVHLSPVTGSLDPA--ELAGWMVADRVRARLGLQLHKTI 203


>gi|226314170|ref|YP_002774066.1| queuosine biosynthesis protein [Brevibacillus brevis NBRC 100599]
 gi|226097120|dbj|BAH45562.1| putative queuosine biosynthesis protein [Brevibacillus brevis NBRC
           100599]
          Length = 239

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 81/220 (36%), Gaps = 36/220 (16%)

Query: 3   LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +  + EIF  T+QGEG   G+  +F R +GC+            +C +CD+ F    G+ 
Sbjct: 1   MIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCNWCDSAFTW-DGSA 48

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
                      + EE    G     +  ++GG P L   +  LI  L + G   AVET G
Sbjct: 49  RDEIRQMSPEAVWEELTRLGGDRFSHVTISGGNPALLAGIGDLISLLKEHGIRTAVETQG 108

Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ----------VNVSPENYIGFDF 168
           +        ID I +SPK          Q L  +  +          + V   +   F +
Sbjct: 109 SKWQAWLPLIDDITLSPKPPSSGMQTDFQALDRIVHELLDQKHPGLSLKVVVFDDADFAY 168

Query: 169 ER----------FSLQPMDGPFLEENTNLAISYCFQNPKW 198
            R          F LQP +    + +T        ++ +W
Sbjct: 169 ARTIHQRFPGVPFYLQPGNSDLTDADTPSLRDKLLESFEW 208


>gi|15896859|ref|NP_350208.1| MoaA family Fe-S oxidoreductase [Clostridium acetobutylicum ATCC
           824]
 gi|15026725|gb|AAK81548.1|AE007858_9 Fe-S oxidoreductase of MoaA family [Clostridium acetobutylicum ATCC
           824]
 gi|325511033|gb|ADZ22669.1| Fe-S oxidoreductase of MoaA family [Clostridium acetobutylicum EA
           2018]
          Length = 221

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 90/232 (38%), Gaps = 48/232 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y + E F+++ GEG  +G+++VF RF+GCNL            C +CDT +   +  K  
Sbjct: 3   YKVVEKFVSINGEGLKSGQLSVFIRFAGCNL-----------NCNYCDTKWANEKDVKYT 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVETNGT 121
                ++   I+E  +      +   LTGGEPLLQ  +  L+  L       + +ETNG+
Sbjct: 52  LMTEKEILSYIKETGV------KNVTLTGGEPLLQDGIVELLNLLSLDSTLRVEIETNGS 105

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGG-----------------QELKLVFP---QVNVSPE 161
           +     +++    P    D K+                      +K V      +  + +
Sbjct: 106 VSLENFLNFKNA-PSFTMDYKLPDSSMENFMKTSNFKFLNKKDVIKFVVSSLKDLKKAMD 164

Query: 162 NYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
               F+  +     + P+ G    E     + +   N      L +Q HK I
Sbjct: 165 IITEFNLSKKTNIYISPVFGRISPET---IVDFMKDNKLNDVTLQIQIHKII 213


>gi|241206476|ref|YP_002977572.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860366|gb|ACS58033.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 242

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 83/240 (34%), Gaps = 49/240 (20%)

Query: 3   LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
              + EIF  T+QGEG   G   VF R  GC+            +C +CD+    +    
Sbjct: 5   TIRVSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDSLHA-VDSAF 52

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
             ++       +  +       +     L+GG P +Q   PLI+  + RG+  A+ET G+
Sbjct: 53  RNQWIPMSTEAVWHKVTELSGGKPLTVSLSGGNPAIQPLRPLIELGHSRGYRFALETQGS 112

Query: 122 IE--PPQGIDWICVSPKAGCDLKIKGGQELK----------------LVFPQVNVSPENY 163
           I     + +D + VSPK      +    ++                 +VF   +      
Sbjct: 113 IAQSWFRDLDVLVVSPKPPSSGMLTDWDQVDNCLQLAAGGPEVALKIVVFDDADYEFAQQ 172

Query: 164 IGFDFERF--SLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQTH 205
            G  + +    LQP +    P   ++  + I        W             R+  Q H
Sbjct: 173 AGQRYPQIPLFLQPGNHTPPPPDNDDARIDIDGVMDRMHWLVERVTADQWFEVRVLPQLH 232


>gi|189219299|ref|YP_001939940.1| Organic radical activating enzyme [Methylacidiphilum infernorum V4]
 gi|189186157|gb|ACD83342.1| Organic radical activating enzyme [Methylacidiphilum infernorum V4]
          Length = 233

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 46/226 (20%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E+FL++QGE   AG    F R +GCNL           +CR+CDT +     + G   
Sbjct: 23  VNEMFLSIQGESTFAGYPCAFIRLTGCNL-----------RCRWCDTTYAF---SGGKLM 68

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            +  + D ++        +     +TGGEPLLQ + + L+  L   G+E+ +ET+G++  
Sbjct: 69  PIRAVIDQVKA------YDVPLVEITGGEPLLQKNSLYLLTLLCDLGYEVLLETSGSLPV 122

Query: 125 PQG-------IDWICVSPKAGCDLKIKGG------QELKLV--------FPQVNVSPENY 163
            +        +D  C S        +          ELK V        + +  ++   +
Sbjct: 123 DRVDSRVHRIVDLKCPSSGQSEHNLLSNLDWLGKRDELKFVIADRKDYEWAKNKLTQGKH 182

Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFI 208
                +  +  P+ G   E +  L   +  +   K RL +Q HK+I
Sbjct: 183 WRDKVKAITFSPVFG---EMDPQLLSQWILEDKLKVRLGLQIHKYI 225


>gi|310825117|ref|YP_003957475.1| radical sam domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309398189|gb|ADO75648.1| Radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 230

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 87/224 (38%), Gaps = 45/224 (20%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           +KEI+L++QGE  HAG +  F R +GC+L           +C +CD++F    GT   R 
Sbjct: 21  VKEIYLSVQGESSHAGLLCAFVRLTGCHL-----------RCTYCDSEFAFRGGT---RM 66

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE- 123
              Q+ + ++              +TGGEPLLQ  V PL++AL   G  + +ET+G I+ 
Sbjct: 67  PNAQVVEQVKAL------RTPMVEITGGEPLLQPGVYPLMEALLAEGLTVLLETSGAIDV 120

Query: 124 --PPQG----IDWICVSPKAGCDLKIKGG------QELKLV--------FPQVNVSPENY 163
              P      +D    S        ++         E+K V        + +  ++    
Sbjct: 121 RLVPPAVHKIVDMKTPSSGESDRNDVRNFSSMNARDEMKFVIGSREDYEWSKALIAEHGL 180

Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
               F       +          LA          R  +Q HK+
Sbjct: 181 ATKPFAMLF-STVFDKLHPR--ELAEWVIADRLPVRFQLQMHKY 221


>gi|322805868|emb|CBZ03433.1| queuosine Biosynthesis QueE Radical SAM [Clostridium botulinum
           H04402 065]
          Length = 221

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 94/232 (40%), Gaps = 48/232 (20%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + + E  +++ GEG   G++A+F RF+GCNL            C +CDT +   +     
Sbjct: 3   FKVVERVVSINGEGRRCGQLAIFIRFAGCNL-----------NCSYCDTLWANEKDVPYE 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVETNGT 121
             +   + + I+       KE +   LTGGEPLLQ  +  L++ L   +   + +ETNG+
Sbjct: 52  VLSSKDIYEYIKS------KEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGS 105

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQ-ELKLVFPQVN-VSPENYIGF------------- 166
           I   + ++ I  SP    D K+     E K+       ++ ++ + F             
Sbjct: 106 ILLDEFLN-IENSPSFTMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLEKARE 164

Query: 167 --------DFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
                   D     + P+ G     N +  + +   N      L +Q HK I
Sbjct: 165 IINKYNLVDKTSVYISPVFGKI---NLDTIVEFMKNNRMNGVNLQLQLHKII 213


>gi|171912287|ref|ZP_02927757.1| Radical SAM domain protein [Verrucomicrobium spinosum DSM 4136]
          Length = 231

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 82/234 (35%), Gaps = 57/234 (24%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            I E F ++QGEG   G  +VF R SGCNL           +CR+CDT +      +G  
Sbjct: 2   RISETFFSVQGEGKLTGVPSVFIRTSGCNL-----------RCRWCDTPYASW-NPEGDD 49

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
            +V+ +   +           RY V+TGGEP +      L+Q L   G  I +ET GT+ 
Sbjct: 50  VSVEDILAEVNRH------PTRYVVVTGGEPTIAAGMRELLQGLRDAGKHITIETAGTVM 103

Query: 124 PPQ-GIDWICVSPKAGC----------------------DLKIKGGQE-----LKLVFPQ 155
           P     D   +SPK                            ++   E     LK V   
Sbjct: 104 PTDLACDLASLSPKLANSTPSVEEAGRGWHDRHEKTRWQPEVLRAWTEACEHQLKFVVSA 163

Query: 156 -------VNVSPENYIGFDFERFSLQPM--DGPFLEENTNLAISYCFQNPKWRL 200
                   N+  E  I    E   L P   +   L       + +C     WR 
Sbjct: 164 EADLLEIENLLAEAKIQTAPENILLMPEGREQTRLHALAPQVVEWCKIR-GWRF 216


>gi|299135832|ref|ZP_07029016.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298601956|gb|EFI58110.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 227

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 89/241 (36%), Gaps = 66/241 (27%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           E++ ++QGE   AG   +F R +GCNL           +C +CD+++     T G  +  
Sbjct: 5   ELYKSVQGESSFAGVPCIFVRLAGCNL-----------RCAWCDSEYTF---TGGKPFTT 50

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPP 125
           D++   IE       +       TGGEP+LQ    +PL+Q L    + + +ET+G     
Sbjct: 51  DEIVAQIE-----ALQPCPLIEFTGGEPMLQQKELLPLMQRLLDANYTLMMETSGERPLA 105

Query: 126 QGIDWICVSPKA---GCDLKIKGGQELKLVFPQVNVS---PENYIGF--------DFER- 170
                    PKA     D+K  G       F   N+    P + + F        +F R 
Sbjct: 106 DV-------PKAVHKIVDVKCPGAGSAANSFHMANLDALTPHDEVKFVLSNRADYEFARD 158

Query: 171 -------------FSLQPMDGPFLEE---------NTNLAISYCFQN-PKWRLSVQTHKF 207
                          L P       E         +    + +   +    RLS+Q HK+
Sbjct: 159 FIRTHALETTCGSILLSPAFSKAPSELRTTDNATLDPRFVVEWMLADGLPARLSLQIHKY 218

Query: 208 I 208
           I
Sbjct: 219 I 219


>gi|306831581|ref|ZP_07464739.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426366|gb|EFM29480.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 237

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 87/243 (35%), Gaps = 56/243 (23%)

Query: 3   LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
              I EIF  T QGEG   G+  +F R  GC+             C +CD+ F      K
Sbjct: 7   TLPILEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEK 55

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
             R  VD++ + +++          Y  L+GG P L  +    L+  L  RG  +A+ET 
Sbjct: 56  PKRMTVDEVIEQLDQLGTYD-----YVTLSGGNPCLLANNMAELVAKLKARGVTLAIETQ 110

Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV------------NVSPENYIG 165
           G+      + ID + +SPK          + L  +  Q+            + +   +  
Sbjct: 111 GSRWQTWLKDIDQVTLSPKPPSSKMTVNFETLDFIVSQLKKDQITFKIPVFDDADLAFAK 170

Query: 166 FDFERFSLQP-----------------MDGPFLEENTNLAISYCFQNPKW---RLSVQTH 205
              +R+  QP                 +    L+    L       +P+W   R+  Q H
Sbjct: 171 MIQKRY--QPDVLYLSAGNPEPHASGNIVEHQLDRLRQLW-ETVAADPEWQSVRVLPQLH 227

Query: 206 KFI 208
             +
Sbjct: 228 TLL 230


>gi|323438941|gb|EGA96676.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus O11]
 gi|323441590|gb|EGA99239.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus O46]
          Length = 237

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 33/195 (16%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +  G   +    ++ +E    G     +  ++GG P L++    L+     +G   A+ET
Sbjct: 49  SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108

Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169
            G+   P    ID + +SPK          ++L  V  Q       + V   +   +DF 
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVIAQCAPSSLNLKVVVFDDKDYDFA 168

Query: 170 R----------FSLQ 174
           +          F LQ
Sbjct: 169 KMIHHRYPDIPFYLQ 183


>gi|171185411|ref|YP_001794330.1| radical SAM domain-containing protein [Thermoproteus neutrophilus
           V24Sta]
 gi|170934623|gb|ACB39884.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 216

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 30/171 (17%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MKL  + EIF +LQGEG + GR AVF R +GC             +CR+CDT +      
Sbjct: 1   MKL-RVLEIFASLQGEGVNLGRPAVFIRLAGCP-----------IRCRYCDTKYSW-DPL 47

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
            G   + +++          G     + V+TGGEPL+  ++  L   L + G  + VET+
Sbjct: 48  GGEELDAEEVVRRAAAHGPLG-----HVVITGGEPLIWRNLHELACPLRRLG-TVEVETS 101

Query: 120 GTIEPPQ----GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
           G   P       +D+  VSPK      +        + P    SP+ +  F
Sbjct: 102 GVYPPTPQLDACVDFYDVSPK------LSNAGVEAPLHPHYPRSPKAWFKF 146


>gi|49482966|ref|YP_040190.1| radical activating enzyme [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257424829|ref|ZP_05601256.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257427497|ref|ZP_05603896.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257430128|ref|ZP_05606512.1| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257432830|ref|ZP_05609190.1| coenzyme PQQ synthesis [Staphylococcus aureus subsp. aureus E1410]
 gi|257435734|ref|ZP_05611782.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus M876]
 gi|282903337|ref|ZP_06311228.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905117|ref|ZP_06312975.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908094|ref|ZP_06315925.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910354|ref|ZP_06318158.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282913547|ref|ZP_06321336.1| ExsD protein [Staphylococcus aureus subsp. aureus M899]
 gi|282916048|ref|ZP_06323811.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus D139]
 gi|282918500|ref|ZP_06326237.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus C427]
 gi|282923465|ref|ZP_06331145.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus C101]
 gi|283769872|ref|ZP_06342764.1| queuosine biosynthesis protein QueE [Staphylococcus aureus subsp.
           aureus H19]
 gi|283957539|ref|ZP_06374992.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293500594|ref|ZP_06666445.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293509540|ref|ZP_06668251.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus M809]
 gi|293524126|ref|ZP_06670813.1| ExsD protein [Staphylococcus aureus subsp. aureus M1015]
 gi|295427286|ref|ZP_06819921.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297590363|ref|ZP_06949002.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus MN8]
 gi|49241095|emb|CAG39773.1| putative radical activating enzyme [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257272399|gb|EEV04522.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257275690|gb|EEV07163.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257279325|gb|EEV09926.1| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257282245|gb|EEV12380.1| coenzyme PQQ synthesis [Staphylococcus aureus subsp. aureus E1410]
 gi|257284925|gb|EEV15044.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus M876]
 gi|282314333|gb|EFB44723.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus C101]
 gi|282317634|gb|EFB48006.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus C427]
 gi|282319996|gb|EFB50343.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus D139]
 gi|282322579|gb|EFB52901.1| ExsD protein [Staphylococcus aureus subsp. aureus M899]
 gi|282325746|gb|EFB56054.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327759|gb|EFB58041.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331942|gb|EFB61453.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282596292|gb|EFC01253.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus C160]
 gi|283460019|gb|EFC07109.1| queuosine biosynthesis protein QueE [Staphylococcus aureus subsp.
           aureus H19]
 gi|283790990|gb|EFC29805.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290921089|gb|EFD98150.1| ExsD protein [Staphylococcus aureus subsp. aureus M1015]
 gi|291095599|gb|EFE25860.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291467637|gb|EFF10152.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus M809]
 gi|295128674|gb|EFG58305.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297576662|gb|EFH95377.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312438868|gb|ADQ77939.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315194326|gb|EFU24718.1| putative radical activating enzyme [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 237

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 33/195 (16%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +  G   +    ++ +E    G     +  ++GG P L++    L+     +G   A+ET
Sbjct: 49  SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108

Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169
            G+   P    ID + +SPK          ++L  V  Q       + V   +   +DF 
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVIAQCVPSSLNLKVVVFDDKDYDFA 168

Query: 170 R----------FSLQ 174
           +          F LQ
Sbjct: 169 KMIHHRYPDIPFYLQ 183


>gi|196247860|ref|ZP_03146562.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. G11MC16]
 gi|196212644|gb|EDY07401.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. G11MC16]
          Length = 244

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 16/143 (11%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +   + EIF  T+QGEG   G+  +F R +GC+            +CR+CD+ F    G+
Sbjct: 3   RTIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSAFTW-DGS 50

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
                      D+ +     G +  R+  ++GG P LL     L+  L+++G ++AVET 
Sbjct: 51  AKEEIEQLTAEDIWQRLEAIGGRRFRHVTISGGNPLLLAALGELVALLHEKGVQVAVETQ 110

Query: 120 GTI--EPPQGIDWICVSPKAGCD 140
           G+   +    +D + +SPK    
Sbjct: 111 GSRWQDWLLDVDDVTISPKPPSS 133


>gi|94971669|ref|YP_593717.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553719|gb|ABF43643.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 226

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 95/237 (40%), Gaps = 55/237 (23%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EI+ +LQGE  + G   +F R + CNL           +C +CD+++       G + 
Sbjct: 3   ITEIYRSLQGESSYTGIPCIFVRLTACNL-----------RCAWCDSEYTF---KGGRKM 48

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
           + D++   +++    G        +TGGEPLLQ    VP ++ L   G+++ +ET+G   
Sbjct: 49  SEDEIFAEVQKLAPGG-----LVEITGGEPLLQERELVPFMERLVASGYKVLIETSGERP 103

Query: 124 ---PPQG----IDWICVSPKAGCDLKIKG------GQELKLVFPQ-------VNVSPENY 163
               PQ     +D  C +   G   +I+         E+K V             + ++ 
Sbjct: 104 LANVPQDVVKIVDVKCPASGEGGSFRIENLDALTPHDEIKFVISDRADYEFAREFTRQHG 163

Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNP----KW--------RLSVQTHKFI 208
           +          P         T  A S+C  +P     W        RL +QTHKFI
Sbjct: 164 LENKVSSVIFSPAFRKD-ARGTRDA-SHCLVDPQDLANWVLEDQLDVRLGLQTHKFI 218


>gi|182416803|ref|ZP_02948194.1| Fe-S oxidoreductase of MoaA family [Clostridium butyricum 5521]
 gi|182379265|gb|EDT76764.1| Fe-S oxidoreductase of MoaA family [Clostridium butyricum 5521]
          Length = 222

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 48/234 (20%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +++I E FL++ GEG  +G +A F RF GCNL           +C +CDT +   +    
Sbjct: 1   MFNIIEKFLSVDGEGPSSGELATFIRFQGCNL-----------RCSWCDTVYSWQKENIN 49

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR--GFEIAVETNG 120
            R N  ++ D I+   +          LTGGEPL+Q ++  +  L        I +ETNG
Sbjct: 50  ERLNAKEIYDYIKSNKVN------NVTLTGGEPLIQKNIDELLRLLDDDSNLNIHIETNG 103

Query: 121 TIEPPQG------------IDWICVSPKAGCDLKIKGGQEL------KLVFPQVNVSPEN 162
           +I+                +D+   S K    +       +      K V   ++   + 
Sbjct: 104 SIDIEPFKKKYTRGNISYIVDFKLPSSKMSSHMNYNNINMISKNDVYKFVIGNMDYLKKA 163

Query: 163 YIGF------DFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
           Y         +  +  L P+ G     +    + +       K RL VQ HK I
Sbjct: 164 YEIIHVYDLANKCKVYLSPVTGNIEMSD---IVEFMKDKNMNKVRLQVQLHKII 214


>gi|283470004|emb|CAQ49215.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 237

 Score =  137 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 33/195 (16%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +  G   +    ++ +E    G     +  ++GG P L++    L+     +G   A+ET
Sbjct: 49  SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108

Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169
            G+   P    ID + +SPK          ++L  V  Q       + V   +   +DF 
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVIAQCVPSSLNLKVVVFDDKDYDFA 168

Query: 170 R----------FSLQ 174
           +          F LQ
Sbjct: 169 KMIHHRYPDIPFYLQ 183


>gi|237668046|ref|ZP_04528030.1| radical SAM domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|237656394|gb|EEP53950.1| radical SAM domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 222

 Score =  137 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 48/234 (20%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +++I E FL++ GEG  +G +A F RF GCNL           +C +CDT +   +    
Sbjct: 1   MFNIIEKFLSVDGEGPSSGELATFIRFQGCNL-----------RCSWCDTVYSWQKENIN 49

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR--GFEIAVETNG 120
            R N  ++ D I+   +          LTGGEPL+Q ++  +  L        I +ETNG
Sbjct: 50  ERLNAKEIYDYIKSNKVN------NVTLTGGEPLIQKNIDELLRLLDDDSNLNIHIETNG 103

Query: 121 TIEPPQG------------IDWICVSPKAGCDLKIKGGQEL------KLVFPQVNVSPEN 162
           +I+                +D+   S K    +       +      K V   ++   + 
Sbjct: 104 SIDIEPFKKKYTRGNISYIVDFKLPSSKMSSHMNYNNINMISKNDVYKFVIGNMDDLKKA 163

Query: 163 YIGF------DFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
           Y         +  +  L P+ G     +    + +       K RL VQ HK I
Sbjct: 164 YEIIHVYDLANKCKVYLSPVTGNIEMSD---IVEFMKDKNMNKVRLQVQLHKII 214


>gi|157692046|ref|YP_001486508.1| queuosine biosynthesis protein [Bacillus pumilus SAFR-032]
 gi|157680804|gb|ABV61948.1| queuosine biosynthesis protein [Bacillus pumilus SAFR-032]
          Length = 243

 Score =  137 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 95/246 (38%), Gaps = 51/246 (20%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           K   + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G+
Sbjct: 3   KAIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGS 50

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
                      D+++E    G +   +  ++GG P LL+    LI  L+++G + A+ET 
Sbjct: 51  AKHDIQWLHAEDIVKELKRIGGQAFSHVTISGGNPALLKQMESLIDLLHEKGIDTALETQ 110

Query: 120 GTI--EPPQGIDWICVSPKAGCDLK-------IKGGQELK------------LVFPQVNV 158
           GT+  +    ID + +SPK              +   ELK            ++F   ++
Sbjct: 111 GTMYQDWFLKIDDLTISPKPPSSNMKTDFAKLTRIIDELKNGNRLEHASLKVVIFDDHDL 170

Query: 159 SPENYIGFDFER--FSLQPMDG-----------PFLEENTNLAISYCFQNP---KWRLSV 202
           +    +   +    F LQ  +              L +     +    Q+P   + R+  
Sbjct: 171 AYAKDVHAKYPELPFYLQVGNDDTTTGDDASLLTHLLKKYEALVDQVAQDPDLNRVRVLP 230

Query: 203 QTHKFI 208
           Q H  +
Sbjct: 231 QLHTLL 236


>gi|325978487|ref|YP_004288203.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325178415|emb|CBZ48459.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 237

 Score =  137 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 85/243 (34%), Gaps = 56/243 (23%)

Query: 3   LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
              I EIF  T QGEG   G+  +F R  GC+             C +CD+ F      K
Sbjct: 7   TLPILEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEK 55

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
             R   D++ + +++          Y  L+GG P L  +    L+  L  RG  +A+ET 
Sbjct: 56  PKRMTADEVIEQLDQLGTYD-----YVTLSGGNPCLLANNMAELVAKLKARGVTLAIETQ 110

Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVF------------PQVNVSPENYIG 165
           G+      + ID + +SPK          + L  +             P  + +   +  
Sbjct: 111 GSRWQTWLKDIDQVTLSPKPPSSKMTVNFETLDFIVSKLKKDQITFKIPVFDDADLAFAK 170

Query: 166 FDFERFSLQP-----------------MDGPFLEENTNLAISYCFQNPKW---RLSVQTH 205
              +R+  QP                 +    L+    L       +P+W   R+  Q H
Sbjct: 171 MIQKRY--QPDVLYLSAGNPEPHANGNIVEHQLDRLRQLW-ETVAADPEWQSVRVLPQLH 227

Query: 206 KFI 208
             +
Sbjct: 228 TLL 230


>gi|288905497|ref|YP_003430719.1| radical SAM domain protein [Streptococcus gallolyticus UCN34]
 gi|288732223|emb|CBI13788.1| putative radical SAM domain protein [Streptococcus gallolyticus
           UCN34]
          Length = 237

 Score =  137 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 86/243 (35%), Gaps = 56/243 (23%)

Query: 3   LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
              I EIF  T QGEG   G+  +F R  GC+             C +CD+ F      K
Sbjct: 7   TLPILEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEK 55

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
             R  VD++ + +++          Y  L+GG P L  +    L+  L  RG  +A+ET 
Sbjct: 56  PKRMTVDEVIEQLDQLGTYD-----YVTLSGGNPCLLANNMAELVAKLKARGVTLAIETQ 110

Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVF------------PQVNVSPENYIG 165
           G+      + ID + +SPK          + L  +             P  + +   +  
Sbjct: 111 GSRWQTWLKDIDQVTLSPKPPSSKMTVNFETLDFIVSKLKKDQITFKIPVFDDADLTFAK 170

Query: 166 FDFERFSLQP-----------------MDGPFLEENTNLAISYCFQNPKW---RLSVQTH 205
              +R+  QP                 +    L+    L       +P+W   R+  Q H
Sbjct: 171 MIQKRY--QPDVLYLSAANPEPHANGNIVEHQLDRLRQLW-ETVAADPEWQSVRVLPQLH 227

Query: 206 KFI 208
             +
Sbjct: 228 TLL 230


>gi|283780242|ref|YP_003370997.1| radical SAM domain-containing protein [Pirellula staleyi DSM 6068]
 gi|283438695|gb|ADB17137.1| Radical SAM domain protein [Pirellula staleyi DSM 6068]
          Length = 228

 Score =  137 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 47/136 (34%), Positives = 70/136 (51%), Gaps = 19/136 (13%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E++ +LQGEG   G  +VF R SGCNL           +C FCDT F   Q  +G  +
Sbjct: 3   IAELYTSLQGEGRLTGTPSVFVRASGCNL-----------RCWFCDTPFTSWQ-PEGEDW 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEP 124
           +++++   ++       K+  + V+TGGEP+L    VPL Q L + G  I +ET GT+  
Sbjct: 51  SLEEIVHQVQA------KQTSHVVITGGEPMLYSEMVPLTQELKRLGLHITIETAGTLHL 104

Query: 125 PQGIDWICVSPKAGCD 140
               D + +SPK    
Sbjct: 105 EVACDLMSISPKLASS 120


>gi|182412684|ref|YP_001817750.1| radical SAM domain-containing protein [Opitutus terrae PB90-1]
 gi|177839898|gb|ACB74150.1| Radical SAM domain protein [Opitutus terrae PB90-1]
          Length = 231

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 19/133 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF +LQGEG   G  +VF R SGCNL           +C +CDT +      +G  +
Sbjct: 3   ISEIFYSLQGEGLLTGVPSVFVRTSGCNL-----------RCNWCDTPYASW-NPEGKPW 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP 124
            ++Q+   ++          R+ VLTGGEP++  ++  L   L    + I +ET  T+ P
Sbjct: 51  RIEQIVREVQSH-----PTARHVVLTGGEPMIAKEIAELAAQLKGLHYHITIETAATVAP 105

Query: 125 PQ-GIDWICVSPK 136
                D   +SPK
Sbjct: 106 EGIACDLASLSPK 118


>gi|189500807|ref|YP_001960277.1| Radical SAM domain-containing protein [Chlorobium phaeobacteroides
           BS1]
 gi|189496248|gb|ACE04796.1| Radical SAM domain protein [Chlorobium phaeobacteroides BS1]
          Length = 223

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 84/235 (35%), Gaps = 58/235 (24%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF ++QGE   AG    F R SGC+           + CR+CDT +  ++   G   
Sbjct: 7   INEIFRSIQGESTFAGTPCTFIRLSGCD-----------SACRWCDTRYASVE--NGTAM 53

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEP 124
            + ++    +              +TGGEPL Q     L+Q L  +G  + +ET G +  
Sbjct: 54  TLSEIERRAD------GFRTSLVEITGGEPLQQEPVYALMQQLCDKGHTVLLETGGFLPV 107

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQELKLVFP---QVNVSPENYIGFDFERFSLQPMDGP 179
            +      V P+     DLK     E   +     ++ VS    +   FE F L      
Sbjct: 108 DR------VDPRVHKIIDLKAPSSGESGRICTSNIELAVSAAEPLKKSFE-FKLLLASRE 160

Query: 180 FLEENTNLAISYCFQ--------------NP------------KWRLSVQTHKFI 208
             +   +L   Y                 +P              RL +Q HK+I
Sbjct: 161 DYDWAVDLLNRYRLNQHCTVLMGTVFNKLHPAELAAWILEDNLNVRLQLQLHKYI 215


>gi|291519768|emb|CBK74989.1| Organic radical activating enzymes [Butyrivibrio fibrisolvens 16/4]
          Length = 222

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 93/238 (39%), Gaps = 54/238 (22%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M +Y + E F+++ GEG HAG +AVF R  GCNL            C +CDT +      
Sbjct: 1   MSVYYVVEKFVSINGEGQHAGELAVFIRLRGCNL-----------ACSYCDTRWACSYEA 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKR-GFEIAVET 118
              +    ++ D ++   +          LTGGEPL   D+  L++A       ++ +ET
Sbjct: 50  PAEQMTEVEILDYVKSTGVNR------VTLTGGEPLKARDIKDLLRAFAAEPNIKVEIET 103

Query: 119 NGT--IEPPQGI------------------DWICVS------PKAGCDLKIKGGQELKLV 152
           NG+  I P   I                  D + +S      PK           EL  V
Sbjct: 104 NGSVNIVPFAAIPNAPAFTLDYKLAGSGMEDEMDLSNFAFLQPKDSVKFVCSDVSELDKV 163

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK--WRLSVQTHKFI 208
              V+     Y   +     + P+ G     +    ++Y  ++ +   RL +Q HKFI
Sbjct: 164 CELVD----TYGLAEKCTVLISPVFGRIDPADM---VNYLIEHKRNDIRLQLQLHKFI 214


>gi|307308045|ref|ZP_07587763.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Sinorhizobium meliloti BL225C]
 gi|307319886|ref|ZP_07599309.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Sinorhizobium meliloti AK83]
 gi|306894426|gb|EFN25189.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Sinorhizobium meliloti AK83]
 gi|306901449|gb|EFN32053.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Sinorhizobium meliloti BL225C]
          Length = 245

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 83/239 (34%), Gaps = 49/239 (20%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G   VF R  GC+            +C +CD+    +     
Sbjct: 9   IRVSEIFGPTIQGEGVLIGLPTVFVRSGGCDY-----------RCSWCDSLHA-VDSNYR 56

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +      ++ +E       E     L+GG P +Q    LI   +++G+  A+ET G++
Sbjct: 57  HEWQTMSTEEVWQEIVRLSGGEAVMVSLSGGNPAIQPLGDLIGRGHEKGYRFALETQGSV 116

Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELK----------------LVFPQVNVSPENYI 164
             +    +D + +SPK          + L                 +VF + + +     
Sbjct: 117 ARDWFAALDVLVLSPKPPSSGMETDWEALDDCLRSAGNKPQTVLKFVVFDEADYAYAMTA 176

Query: 165 GFDFERF--SLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQTH 205
                     LQP +    P  E +  + I    +  +W             R+  Q H
Sbjct: 177 AARHPHLPVYLQPGNHTPPPAEEADAPIDIDGVMERMRWLVDRVVADRWFEARVLPQLH 235


>gi|295401301|ref|ZP_06811273.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312111879|ref|YP_003990195.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. Y4.1MC1]
 gi|294976708|gb|EFG52314.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216980|gb|ADP75584.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. Y4.1MC1]
          Length = 243

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 86/246 (34%), Gaps = 51/246 (20%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           K   + EIF  T+QGEG   G+  +F R +GC+             CR+CD+ F    G+
Sbjct: 3   KKIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCRWCDSAFTW-DGS 50

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
             G         + E     G    R+  ++GG P L+Q    L+  L  +G  IAVET 
Sbjct: 51  AKGEIRQMTAGQIWERLCELGGDRFRHVTISGGNPVLIQALEELVLLLKNKGVRIAVETQ 110

Query: 120 GTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV----------------NVSPE 161
           G+   +    ID + +SPK            L  +  ++                +    
Sbjct: 111 GSRWQDWLYDIDDVTISPKPPSSGMETDFAVLDHIIGKLVGAGRASHVSLKVVVFDDDDF 170

Query: 162 NYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKW--------------RLSV 202
           +Y     +R     F LQ  +   +E++             W              R+  
Sbjct: 171 DYAKIIHKRYPEISFYLQAGNDDIMEKDVAALREKLLAKLDWLVEKVAQSNELNDVRVLP 230

Query: 203 QTHKFI 208
           Q H  +
Sbjct: 231 QLHALL 236


>gi|78188483|ref|YP_378821.1| radical activating enzyme, putative [Chlorobium chlorochromatii
           CaD3]
 gi|78170682|gb|ABB27778.1| radical activating enzyme, putative [Chlorobium chlorochromatii
           CaD3]
          Length = 226

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 86/239 (35%), Gaps = 63/239 (26%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             I EIF ++QGE   AG    F R +GC              C +CDT +   +G    
Sbjct: 9   LRISEIFYSIQGEAFFAGFPCAFIRLAGC-----------GHGCNYCDTSYAEEKGELMA 57

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           +      A++I++             +TGGEPLLQ  V PL++ L  RG ++ +ET G +
Sbjct: 58  Q------AEIIKQAL---SYHAPIIEITGGEPLLQPAVYPLMEELCNRGEQVLLETGGFL 108

Query: 123 EPPQG-------IDWICVSPK-------AGCDLKIKGGQEL--KLVFPQVNVSPENYIG- 165
              +        ID    S         A   L ++   E   +  F  V  + E+Y   
Sbjct: 109 SVEKVDKRVHKIIDLKAPSSGVAEKNNPANIRLALEAAPEEQRRFEFKMVIANREDYEWA 168

Query: 166 ---FDFERF-------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
               +                 +L P         T LA          RL +Q HK++
Sbjct: 169 KTLLEEHHIAAASTVTMGTVFGALSP---------TQLAEWILHDRLPVRLQLQLHKYL 218


>gi|284023732|ref|ZP_06378130.1| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus 132]
          Length = 237

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 87/216 (40%), Gaps = 34/216 (15%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +  G   +    ++ +E    G     +  ++GG P L++    L+     +G   A+ET
Sbjct: 49  SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108

Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169
            G+   P    ID + +SPK          ++L  V  Q       + V   +   +DF 
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVITQCVPSSLNLKVVVFDDKDYDFA 168

Query: 170 R----------FSLQPMDGPFLEENTNLAISYCFQN 195
           +          F LQ +  P+L ++ +  I    + 
Sbjct: 169 KMIHHRYPDIPFYLQ-VGNPYLSDSVDNHIEKLLER 203


>gi|15923700|ref|NP_371234.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15926387|ref|NP_373920.1| hypothetical protein SA0665 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282401|ref|NP_645489.1| hypothetical protein MW0672 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485582|ref|YP_042803.1| putative radical activating enzyme [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57651549|ref|YP_185647.1| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus COL]
 gi|87162096|ref|YP_493398.1| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88194484|ref|YP_499278.1| hypothetical protein SAOUHSC_00719 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148267170|ref|YP_001246113.1| radical SAM domain-containing protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393218|ref|YP_001315893.1| radical SAM domain-containing protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151220891|ref|YP_001331713.1| hypothetical protein NWMN_0679 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156979038|ref|YP_001441297.1| coenzyme PQQ synthesis homologue [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|161508974|ref|YP_001574633.1| organic radical-activating protein [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221140926|ref|ZP_03565419.1| organic radical-activating protein [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253315349|ref|ZP_04838562.1| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|253731333|ref|ZP_04865498.1| organic radical-activating protein [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253732846|ref|ZP_04867011.1| organic radical-activating protein [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|255005502|ref|ZP_05144103.2| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257794969|ref|ZP_05643948.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus A9781]
 gi|258418286|ref|ZP_05682551.1| radical activating enzyme family protein [Staphylococcus aureus
           A9763]
 gi|258421583|ref|ZP_05684508.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus A9719]
 gi|258430776|ref|ZP_05688488.1| radical activating enzyme family protein [Staphylococcus aureus
           A9299]
 gi|258441731|ref|ZP_05691003.1| coenzyme PQQ synthesis [Staphylococcus aureus A8115]
 gi|258445827|ref|ZP_05694004.1| radical activating enzyme family protein [Staphylococcus aureus
           A6300]
 gi|258449638|ref|ZP_05697740.1| radical activating enzyme family protein [Staphylococcus aureus
           A6224]
 gi|258452918|ref|ZP_05700912.1| radical activating enzyme family protein [Staphylococcus aureus
           A5948]
 gi|258454039|ref|ZP_05702011.1| radical activating enzyme family protein [Staphylococcus aureus
           A5937]
 gi|262048445|ref|ZP_06021330.1| hypothetical protein SAD30_2172 [Staphylococcus aureus D30]
 gi|262052792|ref|ZP_06024980.1| hypothetical protein SA930_0349 [Staphylococcus aureus 930918-3]
 gi|269202330|ref|YP_003281599.1| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282894475|ref|ZP_06302704.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus A8117]
 gi|282922002|ref|ZP_06329699.1| 7-cyano-7-deazaguanosine (preQ) biosynthesis protein QueE
           [Staphylococcus aureus A9765]
 gi|282926573|ref|ZP_06334203.1| 7-cyano-7-deazaguanosine (preQ) biosynthesis protein QueE
           [Staphylococcus aureus A10102]
 gi|294849379|ref|ZP_06790122.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus A9754]
 gi|295406428|ref|ZP_06816234.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus A8819]
 gi|296274774|ref|ZP_06857281.1| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297208566|ref|ZP_06924995.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297245155|ref|ZP_06929029.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus A8796]
 gi|300912658|ref|ZP_07130101.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304381675|ref|ZP_07364324.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|13700601|dbj|BAB41898.1| SA0665 [Staphylococcus aureus subsp. aureus N315]
 gi|14246479|dbj|BAB56872.1| coenzyme PQQ synthesis homologue [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21203838|dbj|BAB94537.1| MW0672 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244025|emb|CAG42451.1| putative radical activating enzyme [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57285735|gb|AAW37829.1| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus COL]
 gi|87128070|gb|ABD22584.1| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|87202042|gb|ABD29852.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740239|gb|ABQ48537.1| Radical SAM domain protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945670|gb|ABR51606.1| Radical SAM domain protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150373691|dbj|BAF66951.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156721173|dbj|BAF77590.1| coenzyme PQQ synthesis homologue [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|160367783|gb|ABX28754.1| organic radical-activating protein [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253725074|gb|EES93803.1| organic radical-activating protein [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253729211|gb|EES97940.1| organic radical-activating protein [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257788941|gb|EEV27281.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus A9781]
 gi|257839079|gb|EEV63558.1| radical activating enzyme family protein [Staphylococcus aureus
           A9763]
 gi|257842509|gb|EEV66933.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus A9719]
 gi|257849448|gb|EEV73418.1| radical activating enzyme family protein [Staphylococcus aureus
           A9299]
 gi|257852200|gb|EEV76127.1| coenzyme PQQ synthesis [Staphylococcus aureus A8115]
 gi|257855403|gb|EEV78341.1| radical activating enzyme family protein [Staphylococcus aureus
           A6300]
 gi|257857146|gb|EEV80045.1| radical activating enzyme family protein [Staphylococcus aureus
           A6224]
 gi|257859429|gb|EEV82283.1| radical activating enzyme family protein [Staphylococcus aureus
           A5948]
 gi|257863904|gb|EEV86660.1| radical activating enzyme family protein [Staphylococcus aureus
           A5937]
 gi|259159333|gb|EEW44389.1| hypothetical protein SA930_0349 [Staphylococcus aureus 930918-3]
 gi|259163533|gb|EEW48090.1| hypothetical protein SAD30_2172 [Staphylococcus aureus D30]
 gi|262074620|gb|ACY10593.1| radical activating enzyme family protein [Staphylococcus aureus
           subsp. aureus ED98]
 gi|269940287|emb|CBI48664.1| putative radical activating enzyme [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282591466|gb|EFB96538.1| 7-cyano-7-deazaguanosine (preQ) biosynthesis protein QueE
           [Staphylococcus aureus A10102]
 gi|282593660|gb|EFB98652.1| 7-cyano-7-deazaguanosine (preQ) biosynthesis protein QueE
           [Staphylococcus aureus A9765]
 gi|282763188|gb|EFC03319.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus A8117]
 gi|285816411|gb|ADC36898.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus aureus
           04-02981]
 gi|294823911|gb|EFG40337.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus A9754]
 gi|294968573|gb|EFG44596.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus A8819]
 gi|296886821|gb|EFH25725.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297177826|gb|EFH37075.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus A8796]
 gi|300886904|gb|EFK82106.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|302750608|gb|ADL64785.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304339778|gb|EFM05723.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312829203|emb|CBX34045.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129385|gb|EFT85378.1| organic radical-activating protein [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315197686|gb|EFU28021.1| organic radical-activating protein [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320139958|gb|EFW31819.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320141952|gb|EFW33780.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|329313432|gb|AEB87845.1| Radical SAM domain protein [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329724494|gb|EGG61001.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329728549|gb|EGG64982.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus 21189]
 gi|329729722|gb|EGG66123.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 237

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 33/195 (16%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +  G   +    ++ +E    G     +  ++GG P L++    L+     +G   A+ET
Sbjct: 49  SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108

Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169
            G+   P    ID + +SPK          ++L  V  Q       + V   +   +DF 
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVITQCVPSSLNLKVVVFDDKDYDFA 168

Query: 170 R----------FSLQ 174
           +          F LQ
Sbjct: 169 KMIHHRYPDIPFYLQ 183


>gi|82750412|ref|YP_416153.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus RF122]
 gi|82655943|emb|CAI80347.1| coenzyme PQQ synthesis homolog [Staphylococcus aureus RF122]
          Length = 237

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 33/195 (16%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +  G   +    ++ +E    G     +  ++GG P L++    L+     +G   A+ET
Sbjct: 49  SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108

Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169
            G+   P    ID + +SPK          ++L  V  Q       + V   +   +DF 
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVITQCVPSSLNLKVVVFDDKDYDFA 168

Query: 170 R----------FSLQ 174
           +          F LQ
Sbjct: 169 KMIHHRYPDIPFYLQ 183


>gi|306833726|ref|ZP_07466852.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           bovis ATCC 700338]
 gi|304424063|gb|EFM27203.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           bovis ATCC 700338]
          Length = 237

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 84/241 (34%), Gaps = 52/241 (21%)

Query: 3   LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
              I EIF  T QGEG   G+  +F R  GC+             C +CD+ F      K
Sbjct: 7   TLPILEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEK 55

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
             R   D++ + +++          Y  L+GG P L  +    L+  L  RG  +A+ET 
Sbjct: 56  PKRMTTDEVIEQLDQLGTYD-----YVTLSGGNPCLLANNMAELVAKLKARGVTLAIETQ 110

Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL---- 173
           G+      + ID + +SPK          + L  +  Q+      +    F+   L    
Sbjct: 111 GSRWQTWLKDIDQVTLSPKPPSSKMTVNFETLDFIVSQLKKDQITFKVPVFDDADLVFAK 170

Query: 174 ------QP-----------------MDGPFLEENTNLAISYCFQNPKW---RLSVQTHKF 207
                 QP                 +    LE    L       +P+W   R+  Q H  
Sbjct: 171 MIQKRYQPDVLYLSAGNPEPHANGNIVEHQLERLRQLW-ETVATDPEWQSVRVLPQLHTL 229

Query: 208 I 208
           +
Sbjct: 230 L 230


>gi|254504058|ref|ZP_05116209.1| radical SAM domain protein [Labrenzia alexandrii DFL-11]
 gi|222440129|gb|EEE46808.1| radical SAM domain protein [Labrenzia alexandrii DFL-11]
          Length = 242

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 75/219 (34%), Gaps = 36/219 (16%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G+  VF R  GC+            +C +CDT    +     
Sbjct: 6   IRVNEIFGPTIQGEGALIGQPTVFVRTGGCDY-----------RCSWCDTLHA-VDSAYR 53

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             ++      ++ +  I    +     L+GG P +Q    LI+   + G+  A+ET G+I
Sbjct: 54  DDWHPMTPQAILMQIEILSGGKPLMVSLSGGNPAIQPLGSLIELGKREGYRFALETQGSI 113

Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG--------------- 165
             +    +D + +SPK          Q+L           +  +                
Sbjct: 114 AKDWFAALDVLTLSPKPPSSGMDTDWQKLAECVEAAGSETQTVLKTVIFDDADYDYAKDL 173

Query: 166 ---FDFERFSLQPMDGPFLEENTNLA-ISY--CFQNPKW 198
              +      LQP +       T  A I         +W
Sbjct: 174 AARYPELPLYLQPGNHTPPSPATADAPIDMPGIMDRMRW 212


>gi|149196484|ref|ZP_01873538.1| queuosine biosynthesis protein [Lentisphaera araneosa HTCC2155]
 gi|149140164|gb|EDM28563.1| queuosine biosynthesis protein [Lentisphaera araneosa HTCC2155]
          Length = 212

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 89/224 (39%), Gaps = 38/224 (16%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  I EI+ +LQGE   +G   +F R SGCNL           +C +CDT++     T G
Sbjct: 1   MLYITEIYKSLQGESTWSGLACIFIRLSGCNL-----------RCSWCDTEYSF---TSG 46

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
            + ++D + D +E+             +TGGEPL Q  V  L+Q L   G  + VET G 
Sbjct: 47  DKLSIDNILDRVEQL------NCDLVEVTGGEPLAQDKVGELVQKLLDLGKTVLVETGGH 100

Query: 122 IEP-------PQGIDWICVSPKAGCDLKIKGG------QELKLVFPQVNV---SPENYIG 165
           ++         + +D  C + K      +K         E+K V         + +    
Sbjct: 101 MDINLVSKESIRIMDIKCPASKMSHKNDLKNIAKLTPKDEVKFVIQNKEDFLWAEKTIRE 160

Query: 166 FDFERFSLQPMDGPFLEENTNLAISYCFQN-PKWRLSVQTHKFI 208
           +  E+     M   F   +         Q+    R+ +Q HK I
Sbjct: 161 YKLEKKCTVIMSTVFGLMDREELAGLILQSGLNIRMQIQLHKLI 204


>gi|168704078|ref|ZP_02736355.1| radical activating enzyme [Gemmata obscuriglobus UQM 2246]
          Length = 242

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 83/230 (36%), Gaps = 55/230 (23%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EI+L++QGE   AG   VF R S C+           ++CR+CDT     QGT+  R 
Sbjct: 33  VHEIYLSVQGESTFAGLPCVFVRTSVCD-----------SRCRWCDTPHAFTQGTRVPRA 81

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            V                      +TGGEPLLQ D +PL+  L   G  + +ET+G  + 
Sbjct: 82  EV---------LGKVLSFGCPLVEITGGEPLLQPDVLPLMSELCAAGKTVLLETSGAHDV 132

Query: 125 PQGIDWICVSPKAG--CDLKIKGGQE-----------------LKLVFPQV-----NVSP 160
                   V P+     D+K     E                 +K V          V  
Sbjct: 133 SA------VDPRVHIIMDVKCPASGESHRNRWANFDALKPTDQIKFVIASRADWDWAVGV 186

Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
                 D     L  +   F +      + +   +   + R+ +Q HK+I
Sbjct: 187 IRAHKLDERFACL--VSCVFSDLKPVELVGWLLASGLHRVRMQLQMHKYI 234


>gi|323465121|gb|ADX77274.1| coenzyme PQQ synthesis-like protein [Staphylococcus
           pseudintermedius ED99]
          Length = 237

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 34/207 (16%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDF-----------RCSWCDSKFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +      + +  +++ +    G     +  ++GG P L++     +          A+ET
Sbjct: 49  SMKDDIEMMEAEEILAQLRNIGGNRFNHVTISGGNPALIKGLQSFVDLCEANDIRTALET 108

Query: 119 NGT--IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE-------NYIGFDFE 169
            G+      + I+ + +SPK       +    L  V  Q+++S         +   +DF 
Sbjct: 109 QGSQFKPWMRQINDLTLSPKPPSSGMQQNLPRLDEVIEQLDISRINLKVVVFDDADYDFA 168

Query: 170 R----------FSLQPMDGPFLEENTN 186
           +          F LQ +  P+LEE+  
Sbjct: 169 KMIHQRYPDIPFYLQ-VGNPYLEEHVE 194


>gi|16264809|ref|NP_437601.1| hypothetical protein SM_b20938 [Sinorhizobium meliloti 1021]
 gi|2808502|emb|CAA12532.1| ExsD protein [Sinorhizobium meliloti]
 gi|15140947|emb|CAC49461.1| hypothetical conserved protein [Sinorhizobium meliloti 1021]
          Length = 245

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 82/239 (34%), Gaps = 49/239 (20%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G   VF R  GC+            +C +CD+    +     
Sbjct: 9   IRVSEIFGPTIQGEGVLIGLPTVFVRSGGCDY-----------RCSWCDSLHA-VDSNYR 56

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +      ++ +E       E     L+GG P +Q    LI   ++ G+  A+ET G++
Sbjct: 57  HEWQTMSTEEVWQEIVRLSGGEAVMVSLSGGNPAIQPLGDLIGRGHENGYRFALETQGSV 116

Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELK----------------LVFPQVNVSPENYI 164
             +    +D + +SPK          + L                 +VF + + +     
Sbjct: 117 ARDWFANLDVLVLSPKPPSSGMETDWEALDDCLRSAGNKPQTVLKFVVFDEADYAYAMTA 176

Query: 165 GFDFERF--SLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQTH 205
                     LQP +    P  E +  + I    +  +W             R+  Q H
Sbjct: 177 AARHPHLPVYLQPGNHTPPPAEEADAPIDIDGVMERMRWLVDRVVADRWFEARVLPQLH 235


>gi|258423359|ref|ZP_05686250.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus A9635]
 gi|257846420|gb|EEV70443.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus aureus A9635]
          Length = 237

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 33/195 (16%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +      +    ++ +E    G     +  ++GG P L++    L+     +G   A+ET
Sbjct: 49  SAKSDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108

Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169
            G+   P    ID + +SPK          ++L  V  Q       + V   +   +DF 
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVIAQCVPSSLNLKVVVFDDKDYDFA 168

Query: 170 R----------FSLQ 174
           +          F LQ
Sbjct: 169 KMIHHRYPDIPFYLQ 183


>gi|239826407|ref|YP_002949031.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. WCH70]
 gi|239806700|gb|ACS23765.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Geobacillus sp. WCH70]
          Length = 245

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 16/143 (11%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           K   + EIF  T+QGEG   G+  +F R +GC+            +CR+CD+ F    G+
Sbjct: 5   KKIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSAFTW-DGS 52

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
                       + E  +  G     +  ++GG P L+Q    L+  L  +G  IAVET 
Sbjct: 53  AKEEIRQMTAEQIWERLYELGGDRFSHVTISGGNPVLIQALEELVVLLKNKGIRIAVETQ 112

Query: 120 GTI--EPPQGIDWICVSPKAGCD 140
           G+   +    ID I +SPK    
Sbjct: 113 GSRWQDWLYHIDDITISPKPPSS 135


>gi|222149727|ref|YP_002550684.1| radical activating protein [Agrobacterium vitis S4]
 gi|221736709|gb|ACM37672.1| radical activating protein [Agrobacterium vitis S4]
          Length = 255

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 81/246 (32%), Gaps = 54/246 (21%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
            +  + EIF  T+QGEG   G+  VF R  GC+            +C +CD+    ++  
Sbjct: 12  TVIRVSEIFGPTIQGEGVLIGQPTVFVRMGGCDY-----------RCSWCDSLHA-VESR 59

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
               +    +  +  E             L+GG P +Q    LI   ++RG+  A+ET G
Sbjct: 60  FREEWLPMSVQAIWAEVESLSGGVPLMVSLSGGNPAIQPLGALIAHGHERGYRFALETQG 119

Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKL---------------------VFPQVN 157
           +I  +    +D + VSPK            L L                     VF + +
Sbjct: 120 SIARDWFADLDVLVVSPKPPSSGMETDWDALSLCLEKAAARGEQQSPLTVLKFIVFDEAD 179

Query: 158 VSPENYIGFDFERF--SLQPMD-GPFLEENTNLAISY--CFQNPKW-------------R 199
            +               LQP +  P   E+ +  I          W             R
Sbjct: 180 YAYARDASARHPHLPVYLQPGNHTPPPPEDDDAVIDMDGIMTRMHWLVDRVVEDRWFAAR 239

Query: 200 LSVQTH 205
           +  Q H
Sbjct: 240 VLPQLH 245


>gi|320353477|ref|YP_004194816.1| Radical SAM domain-containing protein [Desulfobulbus propionicus
           DSM 2032]
 gi|320121979|gb|ADW17525.1| Radical SAM domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 223

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 86/230 (37%), Gaps = 49/230 (21%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E F ++QGE   AG   +F R +GCNL           +C +CD  +   +   G   
Sbjct: 8   VCERFYSIQGESTRAGLPCLFVRLAGCNL-----------RCSYCDARYTWEET--GETM 54

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE- 123
            VD++    E+        G    +TGGEPL Q  V PL++ L   G  + +ETNG++  
Sbjct: 55  TVDEILAWAEQ------YPGVMVEVTGGEPLRQNGVYPLMRNLLAAGLTVLLETNGSLPL 108

Query: 124 --PPQGI----DWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-----DFERFS 172
              P+ +    D  C  P +G          L L+  +      + I F     D   ++
Sbjct: 109 CGVPEEVGIVMDIKC--PDSGMA-AHNLADNLDLLRERARRQCRDEIKFVLSSVDDFHWA 165

Query: 173 LQPMDGPFLEENTNLAISYCF--------------QNPKWRLSVQTHKFI 208
            Q +    L+    +  S                      RL +Q H  +
Sbjct: 166 RQVVTRERLDRLLPVLFSPVRPLLDPALLAQLLLDHRLNVRLQLQLHALL 215


>gi|238921904|ref|YP_002935418.1| queuosine biosynthesis protein QueE [Eubacterium eligens ATCC
           27750]
 gi|238873576|gb|ACR73284.1| queuosine biosynthesis protein QueE [Eubacterium eligens ATCC
           27750]
          Length = 221

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 90/229 (39%), Gaps = 42/229 (18%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + E F+++ GEG   G +AVF RF GCNL            C +CDT +          
Sbjct: 2   KVVEKFISINGEGRRTGELAVFIRFKGCNL-----------NCSYCDTKWANEPACDYEE 50

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALN-KRGFEIAVETNGTI 122
            + D++ + + E  I      +   LTGGEPLLQ D+  L++ L  K    + +ETNG +
Sbjct: 51  LSPDEICEYVSETGI------KNVTLTGGEPLLQKDIRSLVEKLLNKSDIRVEIETNGAV 104

Query: 123 EPPQGIDWIC---VS-------PKAGCDLKI--------KGGQELKLV---FPQVNVSPE 161
           +     +      +S       P +GC+ K+        +    +K V      +  + +
Sbjct: 105 DIAPLANAFSKEKLSLTMDYKLPSSGCEEKMLLSNMEVLRKQDTVKFVSGSINDLECAEK 164

Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYC--FQNPKWRLSVQTHKFI 208
               F         +   F        +++    +    RL +Q HK I
Sbjct: 165 IIEKFHLTERCQVFISSVFGSIEPVEIVNFMTSKRMNDVRLQIQMHKVI 213


>gi|189347255|ref|YP_001943784.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
 gi|189341402|gb|ACD90805.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
          Length = 220

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 92/238 (38%), Gaps = 57/238 (23%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
              SI EIF ++QGE   AG    F R +GC              CR+CDT +    GT 
Sbjct: 1   MTISISEIFHSIQGESSFAGWPCAFVRLAGC-----------GHGCRYCDTTYAEKPGT- 48

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
                 D++ + I+E         +   +TGGEPLLQ +V PL++ L  R  ++ +ET G
Sbjct: 49  --EMETDEIFEKIDEIG------AQLVEITGGEPLLQKEVYPLMERLCDRKEKVLLETGG 100

Query: 121 TIEPPQG-------IDWICVSPKA-------GCDLKIKGGQ------ELKLVFPQVNVSP 160
            +   +        ID    S            +L ++ G+      E K+V        
Sbjct: 101 FLSVAKVDQRVHKIIDLKAPSSGVCNKNNPQNIELAMRSGKAEISSFEFKIVV----ADR 156

Query: 161 ENYIG----------FDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           E+Y+            +     L  + G    E   LA        + R+ +Q HK+I
Sbjct: 157 EDYLWARTMLTDTGLAEACTVMLGVVFGKLEPE--RLAQWILEDRIRVRMQLQLHKYI 212


>gi|317129081|ref|YP_004095363.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474029|gb|ADU30632.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus cellulosilyticus DSM 2522]
          Length = 242

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 83/223 (37%), Gaps = 37/223 (16%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M  + + EIF  T+QGEG   GR  +F R +GC+             C +CD+ F    G
Sbjct: 1   MYKFPVLEIFGPTIQGEGMVVGRKTMFVRTAGCDY-----------SCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVET 118
           +           +++      G K   Y  ++GG P L      LI  L+    ++A+ET
Sbjct: 49  SSKEDIKQLTADEILCRLKKDGGKSFDYVTISGGNPALFSHLDELINLLHSENVKVALET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGG---QE---------------LKLV-FPQVN 157
            G+   E    ID + +SPK      I       E               LK+V F   +
Sbjct: 109 QGSRWQEWFLKIDDLTLSPKPPSSQMITNWKILDEIIGHLSSNNRLQYTSLKIVIFTNED 168

Query: 158 VSPENYIGFDFERF--SLQPMDGPFLEENTNLAISYCFQNPKW 198
           ++    I   F      LQ  +    E+N    +    +  KW
Sbjct: 169 LTYAKKIHERFPHIPLYLQVGNEDLDEDNEERLMKKLLEKYKW 211


>gi|194014564|ref|ZP_03053181.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus pumilus ATCC 7061]
 gi|194013590|gb|EDW23155.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus pumilus ATCC 7061]
          Length = 243

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 93/246 (37%), Gaps = 51/246 (20%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           K   + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F      
Sbjct: 3   KAIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTWNGSA 51

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
           K          D+++E    G +   +  ++GG P LL+    LI  L++ G + A+ET 
Sbjct: 52  KHD-IQWLHAEDIVKELKRIGGQAFSHVTISGGNPALLKQMESLIDLLHEEGIDTALETQ 110

Query: 120 GTI--EPPQGIDWICVSPKAGCDLK-------IKGGQELK------------LVFPQVNV 158
           GT+  +    ID + +SPK              +   ELK            ++F   ++
Sbjct: 111 GTMYQDWFLKIDDLTISPKPPSSNMKTDFTKLTRIIDELKNGNRLQHASLKVVIFDDHDL 170

Query: 159 SPENYIGFDFER--FSLQPMDG-----------PFLEENTNLAISYCFQNP---KWRLSV 202
           +    +   +    F LQ  +              L +     +    Q+P   + R+  
Sbjct: 171 AYAKDVHAKYPELPFYLQVGNDDTTTGDDAYLLTHLLKKYEALVDQVAQDPDLNRVRVLP 230

Query: 203 QTHKFI 208
           Q H  +
Sbjct: 231 QLHTLL 236


>gi|149179805|ref|ZP_01858310.1| YkvL [Bacillus sp. SG-1]
 gi|148851997|gb|EDL66142.1| YkvL [Bacillus sp. SG-1]
          Length = 239

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 87/243 (35%), Gaps = 48/243 (19%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M+   + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MRKIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +      +    D+ EE    G     +  ++GG P L+     L+    + G + A+ET
Sbjct: 49  SAKEDIRMLTALDIWEELREIGGNRFNHVTISGGNPALIAAIDDLLTVFKENGIKSALET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV-------------NVSPENY 163
            G+   +    ID + +SPK          ++L  +  Q+             N     Y
Sbjct: 109 QGSRWQDWFLDIDELTLSPKPPSSGMKTDFEKLDFILEQLKEHKSYSLKVVIFNDEDLEY 168

Query: 164 IGFDFER-----FSLQPMDGPFLEEN-----TNLA------ISYCFQN---PKWRLSVQT 204
                ER     F LQ  +     EN       L       I    ++      R+  Q 
Sbjct: 169 ATDLHERYPEVPFFLQVGNTNLSSENEKGLLNQLITDYEKLIDTVTESERLNNVRVLPQL 228

Query: 205 HKF 207
           H +
Sbjct: 229 HTY 231


>gi|167461680|ref|ZP_02326769.1| Radical SAM domain protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 245

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 16/148 (10%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MTNIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCSWCDSSFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +   +  +    D++EE    G K   +  ++GG P LL     L+  L  +G   A+ET
Sbjct: 49  SGKDQIRMLSPEDIVEELKRLGGKRFSHVTISGGNPVLLSQMGKLVSLLQSQGIRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIK 144
            G+   +    +D + +SPK        
Sbjct: 109 QGSKWQDWLLAVDDVTLSPKPPSSGMTT 136


>gi|313891412|ref|ZP_07825028.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Dialister microaerophilus UPII 345-E]
 gi|313120187|gb|EFR43363.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Dialister microaerophilus UPII 345-E]
          Length = 226

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 86/229 (37%), Gaps = 45/229 (19%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + I EIF +++GEG   G +A+F R + CNL           +C +CDT +         
Sbjct: 11  FHIVEIFDSIEGEGKRTGYMAIFVRLASCNL-----------RCTYCDTSYALTLKDTKE 59

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
             +  +L + I           +    TGGEP+L     + + L K G+EI +ET+G+I 
Sbjct: 60  ILSEKELIEKIHS------YPWKKITFTGGEPMLHPLQNICETLGKEGYEINIETSGSIP 113

Query: 124 P----PQGIDWICVSPKAGCD-----------LKIKGGQELKLVF-------PQVNVSPE 161
                P  + +  +  K                K+     LK V            +   
Sbjct: 114 LFDKRPPNL-FYTMDFKCTGSGMKQYMIEENFEKLNKDDVLKFVVGDLTDLGDMRKIIKT 172

Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
            Y   +  RF + P+ G        L ++Y   +      + VQ HK I
Sbjct: 173 KYNNVEQPRFYVSPVWGKIKP--VEL-VNYVKNHKMTNVCVQVQLHKII 218


>gi|298694039|gb|ADI97261.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus subsp.
           aureus ED133]
 gi|302332420|gb|ADL22613.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 237

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 33/195 (16%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +      +    ++ +E    G     +  ++GG P L++    L+     +G   A+ET
Sbjct: 49  SAKSDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108

Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169
            G+   P    ID + +SPK          ++L  V  Q       + V   +   +DF 
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVITQCVPSSLNLKVVVFDDKDYDFA 168

Query: 170 R----------FSLQ 174
           +          F LQ
Sbjct: 169 KMIHHRYPDIPFYLQ 183


>gi|83951567|ref|ZP_00960299.1| radical SAM domain protein [Roseovarius nubinhibens ISM]
 gi|83836573|gb|EAP75870.1| radical SAM domain protein [Roseovarius nubinhibens ISM]
          Length = 236

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 87/242 (35%), Gaps = 47/242 (19%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    I EIF  T+QGEG   G   VF R  GC+            +C +CDT    +  
Sbjct: 1   MSSLRISEIFGPTIQGEGILIGEPTVFVRAGGCDY-----------RCSWCDTPHA-VDS 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
                +      D+ +E     + +     L+GG P +Q   PLI     +G+  A ET 
Sbjct: 49  EHRSSWTPMTTFDIWDEIQRLSDGQPLTVSLSGGNPAIQDFGPLIALGRAQGYRFACETQ 108

Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQE---------------LKLV-FPQVNVSPE 161
           G+I       +D + +SPK     +    +                LK+V F   + +  
Sbjct: 109 GSIARGWFNVLDTLVLSPKPPSSGERPDWEAFDACLRAGANAGRTILKIVIFDDEDYNWA 168

Query: 162 NYIGFDFERFSL------------QPMDGPFLEENTNLAISYCFQNPKW---RLSVQTHK 206
             +   F    L            QP+D P + +   L      ++  W   R+  Q H 
Sbjct: 169 KTVQARFPGLPLFLQPGNPEIDPAQPVDLPAMADRLRLLTERAMRD-GWFSVRILPQLHV 227

Query: 207 FI 208
           FI
Sbjct: 228 FI 229


>gi|319401217|gb|EFV89432.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           epidermidis FRI909]
          Length = 237

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 34/216 (15%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +      +    ++ E     G     +  ++GG P L++    L+    ++    A+ET
Sbjct: 49  SAKEDIKLMTAEEIYEALLEIGGHRFNHVTISGGNPALIKGIQELVDLFEEKHIYTALET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169
            G+        ID + +SPK          + L  V  Q       + V   +   +DF 
Sbjct: 109 QGSRFQSWMTQIDDLTISPKPPSSGMKTNLEVLDSVINQCTFHSLNLKVVIFDDADYDFA 168

Query: 170 R----------FSLQPMDGPFLEENTNLAISYCFQN 195
           +          F LQ +  P+L++N +       + 
Sbjct: 169 KLIHHRYPNIPFYLQ-VGNPYLDDNVDQHTDKLLER 203


>gi|329121407|ref|ZP_08250032.1| radical SAM domain protein [Dialister micraerophilus DSM 19965]
 gi|327469697|gb|EGF15164.1| radical SAM domain protein [Dialister micraerophilus DSM 19965]
          Length = 226

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 86/228 (37%), Gaps = 43/228 (18%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           + I EIF +++GEG   G +A+F R + CNL           +C +CDT +         
Sbjct: 11  FHIVEIFDSIEGEGKRTGYMAIFVRLASCNL-----------RCTYCDTSYALTLKDTKE 59

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
             +  +L + I           +    TGGEP+L     + + L K G+EI +ET+G+I 
Sbjct: 60  ILSEKELIEKIHS------YPWKKITFTGGEPMLHPLQNICETLGKEGYEINIETSGSIP 113

Query: 124 PPQG--------IDWICVSP--KAGCD----LKIKGGQELKLVF-------PQVNVSPEN 162
                       +D+ C     K         K+     LK V            +    
Sbjct: 114 LFDKRPPNLFYTMDFKCTGSGMKQHMIEENFEKLNKDDVLKFVVGDLTDLGDMRKIIKIK 173

Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
           Y   +  RF + P+ G        L ++Y   +      + VQ HK I
Sbjct: 174 YNNAEQPRFYVSPVWGKIKP--VEL-VNYVKDHKMTNVCVQVQLHKII 218


>gi|125975585|ref|YP_001039495.1| radical SAM family protein [Clostridium thermocellum ATCC 27405]
 gi|256005910|ref|ZP_05430855.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
 gi|281416597|ref|ZP_06247617.1| Radical SAM domain protein [Clostridium thermocellum JW20]
 gi|125715810|gb|ABN54302.1| Radical SAM [Clostridium thermocellum ATCC 27405]
 gi|255990114|gb|EEU00251.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
 gi|281407999|gb|EFB38257.1| Radical SAM domain protein [Clostridium thermocellum JW20]
 gi|316939704|gb|ADU73738.1| Radical SAM domain protein [Clostridium thermocellum DSM 1313]
          Length = 210

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 93/231 (40%), Gaps = 57/231 (24%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + EIFL++QGE   AG   VF RF+GCNL           +C +CDT +   +G     
Sbjct: 2   KVNEIFLSIQGESLSAGFPTVFVRFTGCNL-----------RCSYCDTRYAYKEGED--- 47

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
               ++ + I++         +   LTGGEPLLQ ++  L++ L+   + + +ETNG++ 
Sbjct: 48  MTPSEVFEEIKKL------HYKRVCLTGGEPLLQKELGQLLEFLDD--YIVTIETNGSVS 99

Query: 124 PPQGIDWICVSPKAG--CDLKIKGG-----------------QELKLVFPQVNVSPENYI 164
             + ++     PK     D+K+                     E+K V    +    ++ 
Sbjct: 100 L-KSVELKN--PKHSYVMDMKVPSSGCSDQMLFENFDLLRDNDEIKFVI--GSRVDYDWA 154

Query: 165 GFDFERF------SLQPMDGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFI 208
                ++      +  P+ G          + +  +     R  VQ HK I
Sbjct: 155 KNIISKYHKKGTVTFSPVYGKIDYSG---IVKWILEDKLDARFQVQLHKVI 202


>gi|288556797|ref|YP_003428732.1| hypothetical protein BpOF4_19005 [Bacillus pseudofirmus OF4]
 gi|288547957|gb|ADC51840.1| hypothetical protein BpOF4_19005 [Bacillus pseudofirmus OF4]
          Length = 236

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 85/220 (38%), Gaps = 37/220 (16%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           MK   + EIF  T+QGEG   G+  +F R  GC+            +C +CD+ F     
Sbjct: 1   MKKIPVMEIFGPTIQGEGMVIGQKTMFVRTGGCDY-----------RCSWCDSAFTWDGT 49

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118
            K      +++   I++    G     +  ++GG P +   +  L+  L   G + AVET
Sbjct: 50  GKSNLMTAEEI---IKQLKEIGGDRFSHVTISGGNPAIHQGIGKLVSFLKSLGIKTAVET 106

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELK---------------LVFPQVNVSPE 161
            G++  E    +  + +SPK           +L                +VF + ++   
Sbjct: 107 QGSLWQEWMMEVSDVTISPKPPSSKMETDFDKLDYYIDRLKDQHVSLKVVVFTEEDLEYA 166

Query: 162 NYIGFDFERF--SLQP-MDGPFLEENTNLAISYCFQNPKW 198
            +I   +      LQ   D     EN +L IS+     +W
Sbjct: 167 KHIHERYPEIPMYLQVGNDEVESVENDSL-ISHLLDRYEW 205


>gi|16082343|ref|NP_394815.1| ATP binding cassette transporter, ExsD protein related
           [Thermoplasma acidophilum DSM 1728]
 gi|10640702|emb|CAC12480.1| ATP binding cassette transporter, ExsD protein related
           [Thermoplasma acidophilum]
          Length = 209

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 87/223 (39%), Gaps = 43/223 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF ++QGEG +AG   +F R + CN            +C +CDT +       G   
Sbjct: 3   ITEIFHSIQGEGPYAGLPMLFVRTNVCN-----------IRCEWCDTKYSFY---GGKEI 48

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
            + +L  +++E          +   TGGEPL+Q D +  ++++   G  + +ETNGTI  
Sbjct: 49  PLSELLGIVKEAKEG------WVCFTGGEPLVQRDALAFVKSVVDMGKNVLIETNGTISI 102

Query: 125 PQ---------GIDWICVSPKAGCDLKIKGGQEL-KLVFPQVNVSPENYIGFDFE----- 169
                       +D    S K      +   + L K  + ++ +  +  + F  +     
Sbjct: 103 RNFVFSDRIFIDMDVKPPSAKVTKGFLMDNLRYLRKQDYLKIVIKDDTDLDFAIDFVDRY 162

Query: 170 ----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                F  QP  G  +    +  +         R+  Q HK I
Sbjct: 163 GEGLSFVFQPAWGSDIRRIADRIVGT---GYNVRVLPQIHKII 202


>gi|310780054|ref|YP_003968386.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926]
 gi|309749377|gb|ADO84038.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926]
          Length = 222

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 89/237 (37%), Gaps = 57/237 (24%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y + E F+++ GEG  +G +AVF R +GCNL           +C +CDT +         
Sbjct: 3   YKVVETFVSINGEGKKSGELAVFIRLAGCNL-----------RCSYCDTMWANQDDVVFK 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALN-KRGFEIAVETNGT 121
             + +++ D I+   +T         LTGGEPL+Q  V  LI  L       I VETNG+
Sbjct: 52  SMSKEEIYDYIKSTGVT------NVTLTGGEPLIQEGVGELIDYLLTDEKLCIEVETNGS 105

Query: 122 IEPPQ-----------GIDWICVSPKAGCDLK-----------IKGGQELKLVF------ 153
           +   +            +D+     K    L            +     +K V       
Sbjct: 106 VAIQKFRKNHGRRLSFTMDY-----KGSSSLMEEKMLLKNFETLTEHDTVKFVVGNEYDL 160

Query: 154 PQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
            +     + Y   +       P+    +E  T   + +   N   K RL +Q HK I
Sbjct: 161 SKAKDLIDKYHLTEVCHVFFSPIY-KEIEGET--IVEFMKTNKLNKVRLQIQLHKII 214


>gi|310639673|ref|YP_003944431.1| coenzyme pqq synthesis-like protein [Paenibacillus polymyxa SC2]
 gi|309244623|gb|ADO54190.1| Coenzyme PQQ synthesis-like protein [Paenibacillus polymyxa SC2]
          Length = 237

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 17/164 (10%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + E+F  T+QGEG   G   +F R  GC+            +C +CD+ F     
Sbjct: 1   MSKLPVIELFGPTIQGEGSVIGLKTMFVRLYGCDY-----------KCSWCDSAFTWDGS 49

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVE 117
           +K     +  L ++I++    G     Y  ++GG P L       LI  L+KR  +I VE
Sbjct: 50  SKSSIQRLTSL-EIIDKLNSIGLDGCTYVTISGGNPALYNEPLYDLISELHKRSKKIIVE 108

Query: 118 TNGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
           T G+I  +    +D + +SPK    L     + L+ +F  +  S
Sbjct: 109 TQGSIWKDWFNDVDILTISPKPPSSLMTTDWKVLRFIFANLQHS 152


>gi|320546946|ref|ZP_08041247.1| ExsD protein [Streptococcus equinus ATCC 9812]
 gi|320448348|gb|EFW89090.1| ExsD protein [Streptococcus equinus ATCC 9812]
          Length = 237

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 65/166 (39%), Gaps = 21/166 (12%)

Query: 3   LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
              + EIF  T QGEG   G+  +F R  GC+             C +CD+DF      K
Sbjct: 7   TIPVLEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCAWCDSDFTWNGSEK 55

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETN 119
             R   D++   I E    G  +  Y  L+GG P L       L+  L  RG  + +ET 
Sbjct: 56  PNRMTADEI---IAELDRLGTYD--YVTLSGGNPCLLGASMGELVTKLKARGVTLGIETQ 110

Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY 163
           G+      + ID + +SPK          + L  +  Q+      +
Sbjct: 111 GSRWQTWLKDIDQVTLSPKPPSSKMTVNFETLDFIVSQLEKDQHTF 156


>gi|167747133|ref|ZP_02419260.1| hypothetical protein ANACAC_01846 [Anaerostipes caccae DSM 14662]
 gi|167654093|gb|EDR98222.1| hypothetical protein ANACAC_01846 [Anaerostipes caccae DSM 14662]
          Length = 222

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 99/232 (42%), Gaps = 46/232 (19%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M+++ I E F+++ GEG  AGR+++F R  GCNL            C +CDT +   +  
Sbjct: 1   MEVFKIAESFVSINGEGKKAGRLSMFIRLRGCNL-----------NCSYCDTKWAISKKG 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LI-QALNKRGFEIAVET 118
           +       +++ +++E  +          LTGGEPLL  ++  LI   L+    E+ +ET
Sbjct: 50  EAELMTAAEVSQMVKESGV------DLVTLTGGEPLLDENISGLIGSILSLPKMELEIET 103

Query: 119 NGTIEPPQ----------GIDWICVSPKAGCDLKIKGGQELK--LVFPQVNVSPENYIGF 166
           NG+I               +D+   S      + ++  +ELK   V   V  + E+    
Sbjct: 104 NGSIPIRPWRERDARLSMTMDYKLPSSGMEESMCLENMEELKPWDVVKFVIGTREDLEKA 163

Query: 167 D--FERFSL--------QPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHK 206
               ERFSL         P+ G    +     + +  ++   K R  +Q HK
Sbjct: 164 KEVIERFSLCEKAIVYFSPVFGAIPPD---EIVEFMKEHRMNKVRFQIQIHK 212


>gi|228477559|ref|ZP_04062192.1| pyruvate-formate lyase-activating enzyme [Streptococcus salivarius
           SK126]
 gi|228250703|gb|EEK09901.1| pyruvate-formate lyase-activating enzyme [Streptococcus salivarius
           SK126]
          Length = 247

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 21/159 (13%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K 
Sbjct: 18  LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 66

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120
            R   D++ + ++           Y  L+GG P  L      L+  L  RG  +AVET G
Sbjct: 67  TRMTADEVIEALDALGTYD-----YVTLSGGNPALLAANMAELVSKLKARGVTLAVETQG 121

Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
           +   E  + ID + +SPK          + L  +  Q++
Sbjct: 122 SRWQEWLKDIDQVTLSPKPPSSKMEVNMETLDFIVSQLD 160


>gi|206967568|ref|ZP_03228524.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus cereus AH1134]
 gi|206736488|gb|EDZ53635.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus cereus AH1134]
          Length = 238

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 16/160 (10%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           +   +       D+ +E    G +   +  ++GG P L  ++  L+  L + G   A+ET
Sbjct: 49  SAKDQIRQMTPEDIWDELVAIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156
            G+   +    ID + +SPK           +L  +  ++
Sbjct: 109 QGSKWQDWLLQIDEVTISPKPPSSTMKTDFHKLDAIIQKL 148


>gi|75759343|ref|ZP_00739440.1| Queuosine biosynthesis protein QueE [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218896375|ref|YP_002444786.1| radical SAM domain protein [Bacillus cereus G9842]
 gi|74493175|gb|EAO56294.1| Queuosine biosynthesis protein QueE [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218542694|gb|ACK95088.1| radical SAM domain protein [Bacillus cereus G9842]
          Length = 238

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 16/160 (10%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           +   +       D+ +E    G ++  +  ++GG P L  ++  L+  L + G   A+ET
Sbjct: 49  SAKNQIRQMTAEDIWDELVAIGGEKFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156
            G+   +    ID + +SPK          Q+L  +  ++
Sbjct: 109 QGSKWQDWLLQIDEVTISPKPPSSTMKTDFQKLDAIIQKL 148


>gi|322434490|ref|YP_004216702.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321162217|gb|ADW67922.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 227

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 88/235 (37%), Gaps = 54/235 (22%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           E++ ++QGE    G   +F RF+GCNL           +C +CD+++     T G  +  
Sbjct: 5   ELYKSVQGESSFTGLPCIFVRFAGCNL-----------RCAWCDSEYTF---TGGNPFTQ 50

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPP 125
           +++   IE          +    TGGEP+L     +PL+  L  +G+ + +ET+G     
Sbjct: 51  EEVIAQIE-----ALAPCKLVEFTGGEPMLHAKELLPLMDVLLTQGYTLMMETSGERPLD 105

Query: 126 -------QGIDWICV-------SPKAGCDLKIKGGQELKLV--------FPQVNVSPENY 163
                  + +D  C        S +      +    E+K V        F +  ++    
Sbjct: 106 LVPKAVHKIVDVKCPGAGAAANSFRLSNLETLTKNDEVKFVLTNRADYEFARAFIAEHRL 165

Query: 164 IGFDFERFSLQPMDGPF------LEENT---NLAISYCFQN-PKWRLSVQTHKFI 208
                    L P           +E  T      + +   +    RLS+Q HKFI
Sbjct: 166 NDLAAGVL-LSPAFTKNPSPLRTVENATLDPRTLVEWMMHDGVDARLSLQIHKFI 219


>gi|27467403|ref|NP_764040.1| coenzyme PQQ synthesis-like protein [Staphylococcus epidermidis
           ATCC 12228]
 gi|251810140|ref|ZP_04824613.1| queuosine biosynthesis protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282875714|ref|ZP_06284585.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus epidermidis SK135]
 gi|293368166|ref|ZP_06614796.1| ExsD protein [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27314946|gb|AAO04082.1|AE016745_181 coenzyme PQQ synthesis-like protein [Staphylococcus epidermidis
           ATCC 12228]
 gi|251806332|gb|EES58989.1| queuosine biosynthesis protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295741|gb|EFA88264.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus epidermidis SK135]
 gi|291317700|gb|EFE58116.1| ExsD protein [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329723242|gb|EGG59772.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus epidermidis VCU144]
 gi|329735618|gb|EGG71902.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus epidermidis VCU045]
 gi|329736802|gb|EGG73067.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus epidermidis VCU028]
          Length = 237

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 82/216 (37%), Gaps = 34/216 (15%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +      +    ++ +     G     +  ++GG P L++    L+     +    A+ET
Sbjct: 49  SAKEDIKLMTAEEIYDALLEIGGHRFNHVTISGGNPALIKGIQELVDLFEDKHIYTALET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169
            G+        ID + +SPK          + L  V  Q       + V   +   +DF 
Sbjct: 109 QGSRFQSWMTQIDDLTISPKPPSSGMKTNLEILDSVINQCTFHSLNLKVVIFDDADYDFA 168

Query: 170 R----------FSLQPMDGPFLEENTNLAISYCFQN 195
           +          F LQ +  P+L++N +       + 
Sbjct: 169 KLIHHRYPNIPFYLQ-VGNPYLDDNVDQHTDKLLER 203


>gi|293376550|ref|ZP_06622778.1| radical SAM domain protein [Turicibacter sanguinis PC909]
 gi|325839435|ref|ZP_08166874.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Turicibacter sp. HGF1]
 gi|292644776|gb|EFF62858.1| radical SAM domain protein [Turicibacter sanguinis PC909]
 gi|325490555|gb|EGC92871.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Turicibacter sp. HGF1]
          Length = 222

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 88/231 (38%), Gaps = 42/231 (18%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +Y + E F+++ GEG  AG++A F RF  CNL           +C +CDT +      +G
Sbjct: 1   MYQVIEKFISIDGEGPCAGQLAAFIRFKNCNL-----------RCDWCDTCYSYDGSVEG 49

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQAL-NKRGFEIAVETNG 120
              +  ++   ++E  +       +  LTGGEPL+Q  +  LI  L   +   I +ETNG
Sbjct: 50  ENLSPLEIYHFVKENKVN------HVTLTGGEPLIQPQIEVLIGILAADKELTIHIETNG 103

Query: 121 TIEPPQGIDWICVSP-------KAGCDLKIKGGQEL------KLVFPQVNVSPENYIGFD 167
           ++   +       S        K    L      +       K    +  ++ +  +   
Sbjct: 104 SVNIQRFKKKFSKSNVVFILDYKLPNSLMQSRMDDENFKWVTKTDVYKFVIASQEDLKVA 163

Query: 168 FERF--------SLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
            E           L          N +L + Y   +     RL +Q HK+I
Sbjct: 164 HEVIREQGLLERCLVYFSPVVDYINPSLIVDYMKDHQLNDVRLQLQLHKYI 214


>gi|194334507|ref|YP_002016367.1| radical SAM domain-containing protein [Prosthecochloris aestuarii
           DSM 271]
 gi|194312325|gb|ACF46720.1| Radical SAM domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 222

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 90/234 (38%), Gaps = 49/234 (20%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   I EIFL++QGE   AG   VF R +GC           S++C +CDT +    GT 
Sbjct: 3   RTLLINEIFLSIQGESSRAGYPCVFVRLTGC-----------SSRCTWCDTRYAMTNGT- 50

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
                   L ++I+        +     +TGGEPL Q +V PL+Q L  RG+ + +ET G
Sbjct: 51  -----TTSLQNIID---TIAGFKTPLVEITGGEPLEQENVYPLMQQLCNRGYNVMLETGG 102

Query: 121 TIEPPQGIDWIC---VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------- 169
              P   +D      +  K           E  +    +   P     F+F+        
Sbjct: 103 -FHPVSRVDHRVHKIIDLKPPSSGSSSNNHETNIRIA-LKAPPAEQALFEFKIVIAGKED 160

Query: 170 -RFSLQPMDGPFLEENTNLAISYC--------------FQNPKWRLSVQTHKFI 208
             ++ + +    + E+  + +                   +   R+ +Q HK+I
Sbjct: 161 YEWATRLLQRTRINEHCPVVMGTVFSELSPAILASWILKDHLNVRMQLQLHKYI 214


>gi|322373082|ref|ZP_08047618.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Streptococcus sp. C150]
 gi|321278124|gb|EFX55193.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Streptococcus sp. C150]
          Length = 238

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 83/240 (34%), Gaps = 52/240 (21%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K 
Sbjct: 9   LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120
            R   D++   ++           Y  L+GG P  L      L+  L  RG  +AVET G
Sbjct: 58  TRMTADEVIAALDALGTYD-----YVTLSGGNPALLAANMAELVSKLKARGVTLAVETQG 112

Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-------VSPENYIGFDFERF 171
           +   E  + ID I +SPK          + L  +  Q++       V   +    DF + 
Sbjct: 113 SRWQEWLRDIDQITLSPKPPSSKMEVNLETLDFIVSQLDPDKVTFKVPVFDDADLDFAKM 172

Query: 172 SLQPMDGP---FLEENTNL------AISYCFQNP--------------KWRLSVQTHKFI 208
            +Q    P   FL             + Y  +                  R+  Q H  +
Sbjct: 173 -IQERYQPDVMFLSAGNPEPKAEGNIVQYQLERLKELWETVAADDSWGNVRVLPQLHTLL 231


>gi|187735213|ref|YP_001877325.1| Radical SAM domain protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187425265|gb|ACD04544.1| Radical SAM domain protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 227

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 81/224 (36%), Gaps = 44/224 (19%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           EIF ++QGEG   G   VF R +GCNL            C +CDT +       G R   
Sbjct: 12  EIFHSIQGEGVSQGTPCVFLRLAGCNL-----------ACSWCDTAYSWNGTVPGVRLAP 60

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQG 127
           ++ A+L+           R  VLTGGEPL+Q               + +ETNGTI P   
Sbjct: 61  EKAAELVL------HYPCRRLVLTGGEPLIQQKALPALLRLLPDHAVEMETNGTIMPDTE 114

Query: 128 ----IDWICVSPKA----GCDLKIKGGQEL-----------KLVFP-----QVNVSPENY 163
               +    VSPK       D+K      L           K V       +  +   + 
Sbjct: 115 LLKRVTQFNVSPKLPHSGNNDVKTWKPDILRCLAGTEKAWFKFVVACEDDVRAVLQRASE 174

Query: 164 IGFDFERFSLQPMDGPFLEENT--NLAISYCFQNPKWRLSVQTH 205
                ER  + P+     E N     A+ +C      R S + H
Sbjct: 175 ADIPPERILIMPLASTRDELNAMRPQAVEWCL-RYGLRFSDRLH 217


>gi|85707174|ref|ZP_01038261.1| hypothetical protein ROS217_16361 [Roseovarius sp. 217]
 gi|85668333|gb|EAQ23207.1| hypothetical protein ROS217_16361 [Roseovarius sp. 217]
          Length = 240

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 72/192 (37%), Gaps = 32/192 (16%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G+  VF R  GC+            +C +CD+    ++    
Sbjct: 5   IRVSEIFGPTIQGEGALIGQPTVFVRTGGCDY-----------RCSWCDSLHA-VESAYR 52

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +       ++ E             L+GG P +Q    LI   + +G+  A+ET G++
Sbjct: 53  ETWVPMSAEAVMAEVVRLSGGRAIMVTLSGGNPAIQPLGALIDLGHAQGYRFAMETQGSV 112

Query: 123 --EPPQGIDWICVSPKAGCDLKIK--------------GGQELKL-VFPQVNVSPENYIG 165
             +    +D + +SPK      +                   LK+ VF +V+      + 
Sbjct: 113 ARDWFAALDMLVLSPKPPSSSMVVDWALFEECVAAAKGAASVLKIVVFDEVDYQWARQVA 172

Query: 166 FDFER--FSLQP 175
             +      LQP
Sbjct: 173 GRYPHLPLYLQP 184


>gi|327398276|ref|YP_004339145.1| Radical SAM domain-containing protein [Hippea maritima DSM 10411]
 gi|327180905|gb|AEA33086.1| Radical SAM domain protein [Hippea maritima DSM 10411]
          Length = 211

 Score =  134 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 82/220 (37%), Gaps = 37/220 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF ++QGEG   G  A+F R  GCNL           +C FCDT +     +     
Sbjct: 5   VSEIFYSIQGEGSKIGYKAIFIRLCGCNL-----------KCPFCDTKYAL---SCKNPM 50

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
           N  ++ + I           +  + TGGEP L+ +           +   +ETNGT+ P 
Sbjct: 51  NAHEIYEKISR------FPAKNIIFTGGEPTLKDNFMAYFMKKYNNYSYFLETNGTLFPK 104

Query: 126 QGIDW---ICVSPKAGCD--------LKIKGGQELKLVFPQVNVSPENYIGFDFERFS-L 173
           + I+    I VSPK            +K     E K V  +        +     + +  
Sbjct: 105 KSINLFSHIVVSPKMFAINLDVLKSLIKYSISIEFKFVVDENFTKELELMEELGLKEATF 164

Query: 174 QPMDGPFLEEN----TNLAISYCFQNP-KWRLSVQTHKFI 208
           QP+      E+    T   I      P   R+  Q HK +
Sbjct: 165 QPVWLNDSMESYIKKTVRIIEKLKDIPYNIRIIPQIHKIL 204


>gi|239832976|ref|ZP_04681305.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Ochrobactrum intermedium LMG 3301]
 gi|239825243|gb|EEQ96811.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Ochrobactrum intermedium LMG 3301]
          Length = 246

 Score =  134 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 80/221 (36%), Gaps = 36/221 (16%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
               I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++  
Sbjct: 8   TRIRIAEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESR 55

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
               +    +  + +E       +     L+GG P +Q   PLI+   K G+  A+ET G
Sbjct: 56  FRHEWKTMSVEAIWDEVTALSRNKPLTVSLSGGNPAIQPLGPLIEHGRKHGYRFALETQG 115

Query: 121 TIE--PPQGIDWICVSPKAGCDLK------IKGGQE---------LKLV-FPQVNVSPEN 162
           ++       +D + +SPK            +    E         LK V F   + +   
Sbjct: 116 SVVQGWFSALDTLVLSPKPPSSAMDTDFDALAACIEAAGNTPRTVLKFVIFDDADYAFAK 175

Query: 163 YIGFDFERF--SLQPMD-GPFLEENTNLAISY--CFQNPKW 198
            +          LQP +  P   E  + AI      +  +W
Sbjct: 176 EVANRHPHLPVYLQPGNHTPPPPEANDAAIDIDGIMRRMEW 216


>gi|242242077|ref|ZP_04796522.1| organic radical-activating protein [Staphylococcus epidermidis
           W23144]
 gi|242234462|gb|EES36774.1| organic radical-activating protein [Staphylococcus epidermidis
           W23144]
          Length = 237

 Score =  134 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 34/216 (15%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +      +    ++ E     G     +  ++GG P L++    L+    ++    A+ET
Sbjct: 49  SAKEDIKLMTAEEIYEALLEIGGHRFNHVTISGGNPALIKGIQELVNLFEEKHIYTALET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169
            G+        ID + +SPK          + L  V  Q       + V   +   +DF 
Sbjct: 109 QGSRFQSWMTQIDDLTISPKPPSSGMKTNLEVLDSVINQCTFHSLNLKVVIFDDADYDFA 168

Query: 170 R----------FSLQPMDGPFLEENTNLAISYCFQN 195
           +          F LQ +  P+L++N +       + 
Sbjct: 169 KLIHHRYPNIPFYLQ-VGNPYLDDNVDQHTDKLLER 203


>gi|94266661|ref|ZP_01290338.1| Radical SAM [delta proteobacterium MLMS-1]
 gi|93452708|gb|EAT03259.1| Radical SAM [delta proteobacterium MLMS-1]
          Length = 224

 Score =  134 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 30/182 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF ++QGE   AG   +F R +GCNL           +C +CD  +   +   G  Y
Sbjct: 9   LSEIFYSIQGESTLAGYPCLFIRLAGCNL-----------RCSYCDARYTYEE--PGQSY 55

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE- 123
           +++ +   + E    G +      +TGGEPLLQ  V PL+  L  RG ++ +ETNGT   
Sbjct: 56  SLEGVLKAMAEVGP-GGRPVELVEITGGEPLLQEGVYPLLDVLLARGHQVLLETNGTRSL 114

Query: 124 --PPQGI----DWICVSPKAGCDL------KIKGGQELKLVFPQVNVSPENYIGFDFERF 171
              P  +    D  C +      L      ++ G  E+K V    + +  ++        
Sbjct: 115 ARLPAAVRCIMDIKCPASGMAAHLMPENLHRLTGDDEIKFVI--SDRADYDWAKALLNHH 172

Query: 172 SL 173
            L
Sbjct: 173 QL 174


>gi|86740458|ref|YP_480858.1| radical SAM family protein [Frankia sp. CcI3]
 gi|86567320|gb|ABD11129.1| Radical SAM [Frankia sp. CcI3]
          Length = 251

 Score =  134 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 81/202 (40%), Gaps = 24/202 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ---GTK 61
           + EIF  T+QGEG   GR  VF R  GCNL            C +CDT +          
Sbjct: 21  VNEIFGPTVQGEGPSTGRRCVFLRLGGCNLT-----------CSWCDTPYTWDWWGVSDT 69

Query: 62  GGRYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQV--DVPLIQALNKRGFEIAV 116
           G R++  +    +    +     G      V++GGEPL Q    + L+  L   G E+ +
Sbjct: 70  GRRFDPGRELHAMSAAQVGDRLRGLGSGLVVISGGEPLSQQRRLLGLVTGLVDDGIEVEI 129

Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
           ETNGT+ P + +    V+      L   G  E + + P+   +   + G    RF     
Sbjct: 130 ETNGTVAPLEELAESGVAFNVSVKLAHSGVAEPRRLVPEALAA---FAGNPSARFKFVCA 186

Query: 177 DGPFLEENTNLAISYCFQNPKW 198
           D   L+E   L   +    P W
Sbjct: 187 DRDDLDEVGTLVDRFNLA-PVW 207


>gi|13541127|ref|NP_110815.1| organic radical activating protein [Thermoplasma volcanium GSS1]
 gi|14324514|dbj|BAB59441.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 209

 Score =  134 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 87/224 (38%), Gaps = 47/224 (20%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I EIF ++QGEG   G   +F R + CN            +C +CDT +    G +    
Sbjct: 3   ITEIFHSIQGEGTLIGIPMLFVRTNVCN-----------IRCEWCDTKYSFYGGREIALS 51

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
           ++  +    +EQW            TGGEPL+Q D +  ++   K G +I +ETNGT+  
Sbjct: 52  DILNIVKEAKEQW---------VCFTGGEPLVQRDALSFVEGSLKLGKKILIETNGTVPI 102

Query: 125 PQ-------GIDWICVSPKAGCDLKIKGGQE-LKLV--FPQVNVSPENYIGFDFE----- 169
                     +D    SP     ++    +E LK +     + +  ++    DF      
Sbjct: 103 RNFTISDNIVLDVDVKSP--SAKVRKPFLEENLKYIRDTDYLKIVIKDREDLDFAINFIR 160

Query: 170 ------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
                  + LQP  G  +    +  +     +   R+  Q HK 
Sbjct: 161 GHRKNLNYVLQPAWGSDIRMIADAIVET---DLNVRVLPQLHKI 201


>gi|315645295|ref|ZP_07898420.1| radical SAM domain protein [Paenibacillus vortex V453]
 gi|315279337|gb|EFU42643.1| radical SAM domain protein [Paenibacillus vortex V453]
          Length = 244

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 81/205 (39%), Gaps = 28/205 (13%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G+  
Sbjct: 8   IPVLEIFGPTVQGEGLVIGQKTMFVRTAGCDY-----------SCSWCDSSFTW-DGSAK 55

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
                     + +E    G     +  ++GG P L  ++  L+  L+ +G  + +ET G+
Sbjct: 56  NEIKQLSAQTIYDELNSLGGTTFEHVTISGGNPALIKNIGYLVDLLHDKGIRVGLETQGS 115

Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP-ENYIGFDFERFSLQPMDG 178
              +    ID + VSPK      I     L  V   +N SP E  I              
Sbjct: 116 RWQDWMADIDDLTVSPKPPSSGMITDWDRLDGVIKNLNNSPNEICIKVVI---------- 165

Query: 179 PFLEENTNLAISYCFQNPKWRLSVQ 203
            F E++   AI    + P  RL +Q
Sbjct: 166 -FDEDDLQYAIKVHKRYPHMRLVLQ 189


>gi|167768058|ref|ZP_02440111.1| hypothetical protein CLOSS21_02602 [Clostridium sp. SS2/1]
 gi|317498354|ref|ZP_07956650.1| radical SAM superfamily protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|167710387|gb|EDS20966.1| hypothetical protein CLOSS21_02602 [Clostridium sp. SS2/1]
 gi|291561057|emb|CBL39857.1| Organic radical activating enzymes [butyrate-producing bacterium
           SSC/2]
 gi|316894359|gb|EFV16545.1| radical SAM superfamily protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 222

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 57/232 (24%), Positives = 91/232 (39%), Gaps = 46/232 (19%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M+ + + E F+++ GEG  AGR+A+F R  GCNL            C +CDT +   +  
Sbjct: 1   METFKVVETFVSINGEGKKAGRLAMFIRLKGCNL-----------NCSYCDTTWANKRDA 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI-QALNKRGFEIAVET 118
           +       Q+ + I+E  +          LTGGEPLL  +V  LI   L     EI +ET
Sbjct: 50  RCELLTAPQIVERIKEAGVE------LVTLTGGEPLLDENVSELIGSILMMPKVEIEIET 103

Query: 119 NGTIEP----------PQGIDWICVSPKAGCDLKIKG------GQELKLVF---PQVNVS 159
           NG++               +D+   S     ++ ++          +K V      +N +
Sbjct: 104 NGSVPIRYYKERDNRLTMTMDYKLPSSNMEENMCLENMEYLKPWDVVKFVIGSREDLNRA 163

Query: 160 PENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHK 206
            E    F           P+ G    E     + +  +N   K R  +Q HK
Sbjct: 164 KEIIERFRLCEKAIVYFSPVFGKIEPE---EIVEFMKENKLNKVRFQIQIHK 212


>gi|89097396|ref|ZP_01170285.1| radical SAM domain protein [Bacillus sp. NRRL B-14911]
 gi|89087692|gb|EAR66804.1| radical SAM domain protein [Bacillus sp. NRRL B-14911]
          Length = 241

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 16/170 (9%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVMEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSSFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           T           ++  E    G +   +  ++GG P LL+    LI  L K   ++ +ET
Sbjct: 49  TGKELIRQMDAEEIWNELKAIGGEGFSFVTISGGNPALLKNLDKLISLLKKENIQLCLET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
            G+   +    ID + +SPK      I   + L  +F ++     + +  
Sbjct: 109 QGSRWQDWFYSIDQLTISPKPPSSGMITDFEILDDIFERLADRFTHQVSL 158


>gi|327543167|gb|EGF29602.1| radical SAM domain protein [Rhodopirellula baltica WH47]
          Length = 272

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 48/132 (36%), Positives = 68/132 (51%), Gaps = 19/132 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E F++ QGEG   G  +VF R SGCNL           +C FCDT +   +  +G R 
Sbjct: 47  ISETFVSRQGEGELTGTESVFIRTSGCNL-----------RCWFCDTPYASWK-PEGTRQ 94

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP 124
            ++ L  L+ E  +      +Y VLTGGEPL+   +  LI  L   G  + +ET GT++P
Sbjct: 95  TIEDLLQLVAESGV------KYVVLTGGEPLIAKGIVSLIDQLRSAGNHVTIETAGTVDP 148

Query: 125 PQGIDWICVSPK 136
               D + +SPK
Sbjct: 149 GARCDLLSLSPK 160


>gi|319891709|ref|YP_004148584.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161405|gb|ADV04948.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 237

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 16/166 (9%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDF-----------RCSWCDSKFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +      + +  +++ +    G     +  ++GG P L++     +          A+ET
Sbjct: 49  SMKDDIEMMEAEEILAQLRNIGGNRFNHVTISGGNPALIKGLQSFVDLCEANDIRTALET 108

Query: 119 NGT--IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN 162
            G+      + I+ + +SPK       +    L  V  Q+++S  N
Sbjct: 109 QGSQFKPWMRQINDLTLSPKPPSSGMQQNLPRLDEVIEQLDISRIN 154


>gi|222082946|ref|YP_002542311.1| organic-radical-activating protein [Agrobacterium radiobacter K84]
 gi|221727625|gb|ACM30714.1| organic-radical-activating protein [Agrobacterium radiobacter K84]
          Length = 279

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 19/171 (11%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G   VF R  GC+            +C +CDT    +     
Sbjct: 43  IRVSEIFGPTIQGEGILIGLPTVFVRTGGCDY-----------RCSWCDTLHA-VDSDYR 90

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
            ++    + ++ ++       +     L+GG P +Q   PLI   +  G+  A+ET G++
Sbjct: 91  DQWQPMSVDEIWQDVIRLSGGKPLAVSLSGGNPAIQPLGPLIARGHGEGYSFALETQGSV 150

Query: 123 --EPPQGIDWICVSPKAGCDLKIKGG----QELKLVFPQVNVSPENYIGFD 167
             +    +D + +SPK      +         L+L   +  V+ +  +  D
Sbjct: 151 AKDWFADLDTLVLSPKPPSSGMVTDWAVFDDCLRLAADKPQVALKIVVFDD 201


>gi|295695132|ref|YP_003588370.1| Radical SAM domain protein [Bacillus tusciae DSM 2912]
 gi|295410734|gb|ADG05226.1| Radical SAM domain protein [Bacillus tusciae DSM 2912]
          Length = 218

 Score =  133 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 61/237 (25%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + E+F ++QGE    G   VF RF+GCNL           +C +CDT +   +GT   R
Sbjct: 2   KLNELFFSIQGESSSMGLPTVFVRFTGCNL-----------RCSYCDTTYAYFEGT---R 47

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQALNKRGFEIAVETNGT 121
              +++   I+E  +      R   LTGGEPL+Q       L+  L    +E+++ET+G+
Sbjct: 48  TTPEEIFRQIQEYGV------RRVCLTGGEPLIQPREELQQLLDLLGGNNYEVSIETDGS 101

Query: 122 IEPPQGIDWICVSPKA--GCDLKIKGG------------------QELKLV--------F 153
           I+    I+ + + PK     D+K+                      E+K V        +
Sbjct: 102 ID----IERVKLRPKQRFILDIKVPSSDMHTYMDFDNLKRIVPERDEIKFVVGNEEDYLW 157

Query: 154 PQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW--RLSVQTHKFI 208
            +  +           R    P+ G            +  Q+ +W  RL VQ HK++
Sbjct: 158 SKEIIRRYEISPERGYRLLFSPVYGVLEPRTLA---EWILQD-EWDVRLQVQLHKWL 210


>gi|152974870|ref|YP_001374387.1| radical SAM domain-containing protein [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023622|gb|ABS21392.1| Radical SAM domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 238

 Score =  133 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 78/209 (37%), Gaps = 28/209 (13%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +   +       ++ +E    G +   +  ++GG P LL+    L++ L +     A+ET
Sbjct: 49  SAKDQIRQMTPEEIWKELIEIGGENFSHVTISGGNPVLLKHMKELLERLKENNIRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV------------NVSPENYI 164
            G+   E    ID I +SPK            L LV  ++            +     Y 
Sbjct: 109 QGSKWQEWLLDIDEITISPKPPSSKMKTNFTMLDLVVERLVDKNMSLKVVIFDDDDFEYA 168

Query: 165 GFDFERFSLQPMDGPFLEENTNLAISYCF 193
               ER+   P       ++T  A     
Sbjct: 169 KNVHERYPHVPFFLQVGNDDTKTAEDAVL 197


>gi|306824721|ref|ZP_07458065.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|304432932|gb|EFM35904.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
          Length = 238

 Score =  133 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 67/159 (42%), Gaps = 21/159 (13%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K 
Sbjct: 9   LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120
            R   D++   I E    G  +  Y  L+GG P  L      L+  L +RG  +AVET G
Sbjct: 58  TRMTADEV---IAELDKLGSYD--YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQG 112

Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
           +      + ID + +SPK          + L  +  Q++
Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLD 151


>gi|193213357|ref|YP_001999310.1| radical SAM domain-containing protein [Chlorobaculum parvum NCIB
           8327]
 gi|193086834|gb|ACF12110.1| Radical SAM domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 219

 Score =  133 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/232 (24%), Positives = 85/232 (36%), Gaps = 51/232 (21%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             SI EIF ++QGE   AG    F R +GC              C +CDT +    GT  
Sbjct: 5   TISISEIFHSIQGESSFAGWPCAFVRLAGC-----------GHGCNYCDTTYAEEAGTA- 52

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
               +D++             +     +TGGEPLLQ +V PL+ AL  +G ++ +ET G 
Sbjct: 53  --MTIDEVV------RRALTFDAPIVEVTGGEPLLQPEVYPLLSALCDKGAKVLLETGGF 104

Query: 122 IEP-------PQGIDWICVS------------------PKAGCDLKIKGGQELKLVFPQV 156
           +            ID    S                  PK   + KI    E   ++ + 
Sbjct: 105 LPVNRVDPRVHTIIDIKTPSSGVAEQNCMDNIPLALASPKR-FEFKIVVASEEDYLWARD 163

Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
            ++ +  +G     F    + G        LA          R+ +Q HK+I
Sbjct: 164 FITKQGLLGKCTLIFGT--VFGQLEPRL--LAEWILRDRLPVRMQLQLHKYI 211


>gi|322516971|ref|ZP_08069861.1| ExsD protein [Streptococcus vestibularis ATCC 49124]
 gi|322124454|gb|EFX95949.1| ExsD protein [Streptococcus vestibularis ATCC 49124]
          Length = 238

 Score =  133 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 21/159 (13%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K 
Sbjct: 9   LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120
            R   D++ + ++           Y  L+GG P  L      L+  L  RG  +AVET G
Sbjct: 58  TRMTADEVIEALDALGTYD-----YVTLSGGNPALLAANMAQLVSKLKARGVTLAVETQG 112

Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
           +   E  + ID + +SPK          + L  +  Q++
Sbjct: 113 SRWQEWLKDIDQVTLSPKPPSSKMEVNMETLDFIVSQLD 151


>gi|206603340|gb|EDZ39820.1| Putative radical activating enzyme [Leptospirillum sp. Group II
           '5-way CG']
          Length = 212

 Score =  133 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 82/225 (36%), Gaps = 43/225 (19%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            I E F ++QGE  ++G    F R +GC L           +CR+CDT +       G  
Sbjct: 2   KITETFRSIQGESRYSGWPCFFIRTTGCPL-----------RCRWCDTTYSFY---GGEE 47

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
             VD L                   +TGGEP +Q ++P L Q L  RG  + +ET+G   
Sbjct: 48  RTVDSLV------GEAVSSGTSLVEITGGEPFVQPELPALCQKLLDRGKTVLIETSGGFS 101

Query: 124 PPQGIDWIC------VSPKAGCDLKIK--------GGQELKLVFPQVNVSPENYIGFDFE 169
            P G++  C        P +G +  +K        G  E+K V    +    +    +  
Sbjct: 102 VPSGLNRQCRLIVDLKPPGSGMEAWMKAENFAELGGEDEIKAVLAGRDDFDWSVQKLEEW 161

Query: 170 RFS------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                      P+ G        LA          R+ VQ HK +
Sbjct: 162 GVWGRVPVTFSPVFGECDPR--ELARWVLDSGLPIRIQVQLHKIL 204


>gi|197303437|ref|ZP_03168476.1| hypothetical protein RUMLAC_02159 [Ruminococcus lactaris ATCC
           29176]
 gi|197297435|gb|EDY31996.1| hypothetical protein RUMLAC_02159 [Ruminococcus lactaris ATCC
           29176]
          Length = 221

 Score =  133 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/232 (24%), Positives = 92/232 (39%), Gaps = 48/232 (20%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + E F+++ GEG  AG +AVF RF GCNL            C +CDT +          
Sbjct: 2   KVVEKFISINGEGRRAGELAVFIRFKGCNL-----------NCSYCDTKWANEPACDYEE 50

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALN-KRGFEIAVETNGTI 122
            + D + + + E  I      +   LTGGEPLLQ D+  L++ L  K    + +ETNG +
Sbjct: 51  LSPDDICEYVSETGI------KNVTLTGGEPLLQKDIRSLVEKLLNKSDIRVEIETNGAV 104

Query: 123 EPPQGIDWIC---VSPKAGCDLKIKGGQ-ELKLVFPQVNV-SPENYIGF----------- 166
           +     +      +S     D K+     E K++   + V   ++ + F           
Sbjct: 105 DIAPLANAFSKEKLS--LTMDYKLPSSGCEEKMILSNMEVLRKQDTVKFVSGSVKDLECA 162

Query: 167 ----------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                     +  +  + P+ G  +E    +      +    RL +Q HK I
Sbjct: 163 EKIIGKFHLTERCQVFISPVFGS-IEPVEIVNFMTSKRMNDVRLQIQMHKVI 213


>gi|311030030|ref|ZP_07708120.1| radical SAM domain-containing protein [Bacillus sp. m3-13]
 gi|311032350|ref|ZP_07710440.1| radical SAM domain-containing protein [Bacillus sp. m3-13]
          Length = 239

 Score =  133 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 93/239 (38%), Gaps = 47/239 (19%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
            L  + EIF  T+QGEG   G+  +F R +GC+            +C +CD+ F    G+
Sbjct: 3   SLIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCSWCDSAFTW-DGS 50

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
                 +    ++ E+    G K   +  ++GG P LL+    L+Q L++   ++A+ET 
Sbjct: 51  AKDDIVMMSHEEIYEQLVEIGGKAFNHVTISGGNPALLKNIGKLVQLLHENDIKVALETQ 110

Query: 120 GTI--EPPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQVNVS------PENYIGFDF 168
           G+   +    ID + +SPK    G D      ++L       +VS       E+ + +  
Sbjct: 111 GSKWQDWLMEIDDLTISPKPPSSGMDTNFSILRDLLERVKNSSVSLKVVVFDEDDLAYSK 170

Query: 169 ERFSLQP---------MDGPFLEENTNLA----------ISYCFQN---PKWRLSVQTH 205
           +   L P          D    E++  L           I     +      R+  Q H
Sbjct: 171 KVHKLYPDIAFYVQVGNDDTTTEDDQKLISNLLAKYEWLIDQVMNDDEMNNVRVLPQLH 229


>gi|32472078|ref|NP_865072.1| radical activating enzyme [Rhodopirellula baltica SH 1]
 gi|32397450|emb|CAD72756.1| conserved hypothetical protein-putative radical activating enzyme
           [Rhodopirellula baltica SH 1]
          Length = 257

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 19/132 (14%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I E F++ QGEG   G  +VF R SGCNL           +C FCDT +   +  +G R 
Sbjct: 32  ISETFVSRQGEGELTGTESVFIRTSGCNL-----------RCWFCDTPYASWK-PEGTRQ 79

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP 124
            ++ L  L+ +  +      ++ VLTGGEPL+   +  LI  L   G  + +ET GT++P
Sbjct: 80  TIEDLLQLVAKSGV------KHVVLTGGEPLIAKGIVSLIDQLRSAGNHVTIETAGTVDP 133

Query: 125 PQGIDWICVSPK 136
               D + +SPK
Sbjct: 134 GARCDLLSLSPK 145


>gi|291522438|emb|CBK80731.1| Organic radical activating enzymes [Coprococcus catus GD/7]
          Length = 223

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 84/234 (35%), Gaps = 48/234 (20%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           + Y + E F+++ GEG  AG++AVF RF GCNL            C +CDT +       
Sbjct: 3   RTYEVVEHFVSINGEGPLAGQLAVFVRFKGCNL-----------SCLYCDTKWANEPDVP 51

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL-NKRGFEIAVETN 119
                 +++   I E  +      R   LTGGEPL +  +  L++ L       + +ETN
Sbjct: 52  ARVMTAEEIHQAIMETGV------RNVTLTGGEPLDRPHISELLEKLAADHSLHVEIETN 105

Query: 120 GTIEPPQGIDWICVSPKAGCDLK-----------------IKGGQELKLVF------PQV 156
           G++     ++ I   P    D K                 +     +K V        + 
Sbjct: 106 GSVSLAPFVN-IPNRPSFTMDYKLSCSGMETAMDTDNFSLLTEKDTVKFVTGSLADCERA 164

Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
               + +           P+ G     +    + +  +       L +Q HK I
Sbjct: 165 VEIMKQFRLIGRCHLYFSPVFGSIDPAD---IVEFMKEQQLNGVNLQIQMHKVI 215


>gi|145591319|ref|YP_001153321.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145283087|gb|ABP50669.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 216

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 25/141 (17%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + EIF +LQGEG + G+ AVF R +GC             +C +CDT +     + G  
Sbjct: 2   RVLEIFASLQGEGVNLGKPAVFVRLAGCP-----------IRCAYCDTKYSW-DFSAGVE 49

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQALNKRGFEIAVETNGT 121
            +V+++        + G     + V+TGGEPL+        L  AL   G  + VET+G 
Sbjct: 50  MSVEEVFAKAASLGVRG-----HVVVTGGEPLIWQRRGLENLACALRGLG-AVEVETSGA 103

Query: 122 IEPPQ----GIDWICVSPKAG 138
             P       +D+  VSPK  
Sbjct: 104 YSPTPELDSCVDYYDVSPKLS 124


>gi|42780534|ref|NP_977781.1| radical SAM domain-containing protein [Bacillus cereus ATCC 10987]
 gi|42736454|gb|AAS40389.1| radical SAM domain protein [Bacillus cereus ATCC 10987]
          Length = 238

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 21/179 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           +   +       D+  E    G +   +  ++GG P L  ++  L+  L + G   A+ET
Sbjct: 49  SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFER 170
            G+   +    ID I +SPK          Q+L     KL    +++    +  +DFE 
Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMKTDFQKLDAMIQKLAGKDISLKVVVFDDYDFEY 167


>gi|307707501|ref|ZP_07643983.1| coenzyme PQQ synthesis [Streptococcus mitis NCTC 12261]
 gi|307616453|gb|EFN95644.1| coenzyme PQQ synthesis [Streptococcus mitis NCTC 12261]
          Length = 238

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 21/159 (13%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K 
Sbjct: 9   LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120
            R   D++   +++          Y  L+GG P  L      L+  L +RG  +AVET G
Sbjct: 58  TRMTADEVIAALDKLG-----NYDYVTLSGGNPAILAANMAELVTKLKERGVTLAVETQG 112

Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
           +      + ID + +SPK          + L  +  Q++
Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLD 151


>gi|47566230|ref|ZP_00237258.1| Organic radical activating enzyme [Bacillus cereus G9241]
 gi|47556783|gb|EAL15114.1| Organic radical activating enzyme [Bacillus cereus G9241]
          Length = 238

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 21/179 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           +   +       D+  E    G +   +  ++GG P L  ++  L+  L + G   A+ET
Sbjct: 49  SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170
            G+   +    ID I +SPK          Q+L  +  +++    +     +  +DFE 
Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMKTDFQKLDAIIQKLSGKDISLKVVVFDDYDFEY 167


>gi|322377478|ref|ZP_08051969.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Streptococcus sp. M334]
 gi|321281678|gb|EFX58687.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Streptococcus sp. M334]
          Length = 238

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 21/159 (13%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K 
Sbjct: 9   LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120
            R   D++   +++          Y  L+GG P  L      L+  L +RG  +AVET G
Sbjct: 58  TRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQG 112

Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
           +      + ID + +SPK          + L  +  Q++
Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLD 151


>gi|325062819|gb|ADY66509.1| radical activating protein [Agrobacterium sp. H13-3]
          Length = 251

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 81/239 (33%), Gaps = 49/239 (20%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             I EIF  T+QGEG   G   VF R  GC+            +C +CDT    +     
Sbjct: 15  IRISEIFGPTIQGEGLLIGLPTVFVRTGGCDY-----------RCSWCDTLHA-VDSEYR 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +    +  + +E             L+GG P +Q    LI      G+  A+ET G+I
Sbjct: 63  DTWKPMSVEAIWQEVRRLSGGVPLTVSLSGGNPAIQPLGQLIAKGQGEGYRFALETQGSI 122

Query: 123 --EPPQGIDWICVSPKA---GCDLKIKGGQE------------LKLVF---PQVNVSPEN 162
             +    +D + +SPK    G +   +  ++            LK+V         +   
Sbjct: 123 AKDWFGDLDHLVLSPKPPSSGMETDWQAFEDCLAAAGDGPQVALKIVVFDDADYAYAKAA 182

Query: 163 YIGFDFERFSLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQTH 205
              F      LQP +    P  ++N  + I        W             R+  Q H
Sbjct: 183 SARFPHLPIYLQPGNHTPPPPDDDNARVDIDGIMDRMLWLVDKVSEDRWFSARVLPQLH 241


>gi|312863321|ref|ZP_07723559.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Streptococcus vestibularis F0396]
 gi|311100857|gb|EFQ59062.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Streptococcus vestibularis F0396]
          Length = 238

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 86/242 (35%), Gaps = 56/242 (23%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K 
Sbjct: 9   LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120
            R   D++ + ++           Y  L+GG P  L      L+  L  RG  +AVET G
Sbjct: 58  TRMTADEVIEALDALGTYD-----YVTLSGGNPALLAANMAQLVSKLKARGVTLAVETQG 112

Query: 121 TI--EPPQGIDWICVSPKAG---CDLKIK---------GGQELKLVFPQVNVSPENYIGF 166
           +   E  + ID + +SPK      ++ ++            +L    P  + +   +   
Sbjct: 113 SRWQEWLKDIDQVTLSPKPPSSKMEVNMEILDFIVSQLDPDKLTFKVPVFDDADLAFAKM 172

Query: 167 DFERFSLQP-----------------MDGPFLEENTNLAISYCFQNPKW---RLSVQTHK 206
             ER+  QP                 +    L+    L       +  W   R+  Q H 
Sbjct: 173 IQERY--QPDVMFLSAGNPEPKAEGNIVQHQLDRLKELW-ETVAADDSWGNVRVLPQLHT 229

Query: 207 FI 208
            +
Sbjct: 230 LL 231


>gi|159900637|ref|YP_001546884.1| radical SAM domain-containing protein [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893676|gb|ABX06756.1| Radical SAM domain protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 230

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 102/237 (43%), Gaps = 54/237 (22%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG--IQGTKG 62
           ++ E++ ++QGEG   G    F RF  CNL           +C +CDT +     +G K 
Sbjct: 2   NVMEVYRSVQGEGTLMGVPTTFVRFFACNL-----------RCSWCDTKYSWSVKEGGKW 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
               +  LA  I +Q        R+ VLTGGEP+LQ ++P L Q L   G  + VETN T
Sbjct: 51  EDLPIATLAQRIADQG------ARHVVLTGGEPMLQRELPALAQTLRAAGHHLTVETNST 104

Query: 122 IEPPQGIDWI---CVSPK-AGCDLKIKGGQEL-------------KLVF------PQVNV 158
           +  P+ ++ I    +SPK AG +  +   + L             K V        Q++ 
Sbjct: 105 LFRPELVELINLWSLSPKLAGANTGMLRLEPLRQFMQLPAEQQQWKFVITGESDLAQLHQ 164

Query: 159 SPENYIGFDFERFSL--QPMDGPFLEENTNLAISYCFQN---PKW-----RLSVQTH 205
               +  F   +  +  QP +G + E +   A+ +  +    P+W     R+  Q H
Sbjct: 165 FVSEHQAFAEAQLPIIWQP-EGRWAERDYAHALEWLAERAQLPEWRPFNVRVLPQMH 220


>gi|307705450|ref|ZP_07642305.1| pyruvate-formate lyase-activating enzyme [Streptococcus mitis
           SK597]
 gi|307620985|gb|EFO00067.1| pyruvate-formate lyase-activating enzyme [Streptococcus mitis
           SK597]
          Length = 238

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 21/159 (13%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K 
Sbjct: 9   LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120
            R   D++   +++          Y  L+GG P  L      L+  L +RG  +AVET G
Sbjct: 58  TRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQG 112

Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
           +      + ID + +SPK          + L  +  Q++
Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLD 151


>gi|307709658|ref|ZP_07646110.1| pyruvate-formate lyase-activating enzyme [Streptococcus mitis
           SK564]
 gi|307619556|gb|EFN98680.1| pyruvate-formate lyase-activating enzyme [Streptococcus mitis
           SK564]
          Length = 238

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 21/159 (13%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K 
Sbjct: 9   LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120
            R   D++   +++          Y  L+GG P  L      L+  L +RG  +AVET G
Sbjct: 58  TRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQG 112

Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
           +      + ID + +SPK          + L  +  Q++
Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLD 151


>gi|307707096|ref|ZP_07643893.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           mitis SK321]
 gi|307617622|gb|EFN96792.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           mitis SK321]
          Length = 238

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 21/159 (13%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K 
Sbjct: 9   LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120
            R   D++   +++          Y  L+GG P  L      L+  L +RG  +AVET G
Sbjct: 58  TRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQG 112

Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
           +      + ID + +SPK          + L  +  Q++
Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLD 151


>gi|16078438|ref|NP_389257.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221309238|ref|ZP_03591085.1| hypothetical protein Bsubs1_07606 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313566|ref|ZP_03595371.1| hypothetical protein BsubsN3_07547 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318488|ref|ZP_03599782.1| hypothetical protein BsubsJ_07481 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322761|ref|ZP_03604055.1| hypothetical protein BsubsS_07587 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321315129|ref|YP_004207416.1| queuosine biosynthesis enzyme [Bacillus subtilis BSn5]
 gi|81341926|sp|O31677|QUEE_BACSU RecName: Full=7-carboxy-7-deazaguanine synthase; Short=CDG
           synthase; AltName: Full=Queuosine biosynthesis protein
           queE
 gi|2633745|emb|CAB13247.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|320021403|gb|ADV96389.1| queuosine biosynthesis enzyme [Bacillus subtilis BSn5]
          Length = 243

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 16/165 (9%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G+  
Sbjct: 5   IPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAK 52

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121
                    ++  E    G     +  ++GG P LL+     I+ L +     A+ET GT
Sbjct: 53  KDIRWMTAEEIFAELKDIGGDAFSHVTISGGNPALLKQLDAFIELLKENNIRAALETQGT 112

Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYI 164
           +  +    ID + +SPK      +   Q+L  +   +  +   + 
Sbjct: 113 VYQDWFTLIDDLTISPKPPSSKMVTNFQKLDHILTSLQENDRQHA 157


>gi|322388780|ref|ZP_08062377.1| ExsD protein [Streptococcus infantis ATCC 700779]
 gi|321140399|gb|EFX35907.1| ExsD protein [Streptococcus infantis ATCC 700779]
          Length = 238

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 67/159 (42%), Gaps = 21/159 (13%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K 
Sbjct: 9   LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120
            R   D++   I E    G  +  Y  L+GG P  L      L+  L +RG  +AVET G
Sbjct: 58  TRMTADEV---IAELDKLGSYD--YVTLSGGNPAILAANMAQLVTKLKERGITLAVETQG 112

Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
           +      + ID + +SPK          + L  +  Q++
Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLD 151


>gi|306842891|ref|ZP_07475527.1| Radical SAM domain protein [Brucella sp. BO2]
 gi|306286914|gb|EFM58434.1| Radical SAM domain protein [Brucella sp. BO2]
          Length = 248

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 80/219 (36%), Gaps = 36/219 (16%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++    
Sbjct: 12  IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 59

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +    +  +  E     +K      L+GG P +Q   PLI+     G+  A+ET G++
Sbjct: 60  HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLAPLIEHGKAEGYRFALETQGSV 119

Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQ---------------ELKLV-FPQVNVSPENYI 164
             +    +D + +SPK                           LK V F + + +    +
Sbjct: 120 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKFVIFDEADYAYARAV 179

Query: 165 GFDFERF--SLQPMD-GPFLEENTNLAISY--CFQNPKW 198
                +    +QP +  P   +  + AI      +  +W
Sbjct: 180 SARHPQLPVYVQPGNHTPPPPDAEDAAIDIDGIMRRMEW 218


>gi|30261442|ref|NP_843819.1| radical SAM domain-containing protein [Bacillus anthracis str.
           Ames]
 gi|47526631|ref|YP_017980.1| radical sam domain-containing protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49184276|ref|YP_027528.1| radical SAM domain-containing protein [Bacillus anthracis str.
           Sterne]
 gi|52143995|ref|YP_082833.1| radical SAM domain-containing protein [Bacillus cereus E33L]
 gi|65318711|ref|ZP_00391670.1| COG0602: Organic radical activating enzymes [Bacillus anthracis
           str. A2012]
 gi|118476912|ref|YP_894063.1| radical SAM domain-containing protein [Bacillus thuringiensis str.
           Al Hakam]
 gi|165870409|ref|ZP_02215064.1| radical SAM domain protein [Bacillus anthracis str. A0488]
 gi|167634333|ref|ZP_02392654.1| radical SAM domain protein [Bacillus anthracis str. A0442]
 gi|167639360|ref|ZP_02397632.1| radical SAM domain protein [Bacillus anthracis str. A0193]
 gi|170686800|ref|ZP_02878020.1| radical SAM domain protein [Bacillus anthracis str. A0465]
 gi|170706317|ref|ZP_02896778.1| radical SAM domain protein [Bacillus anthracis str. A0389]
 gi|177651608|ref|ZP_02934397.1| radical SAM domain protein [Bacillus anthracis str. A0174]
 gi|190568020|ref|ZP_03020930.1| radical SAM domain protein [Bacillus anthracis Tsiankovskii-I]
 gi|196035271|ref|ZP_03102676.1| radical SAM domain protein [Bacillus cereus W]
 gi|196040614|ref|ZP_03107913.1| radical SAM domain protein [Bacillus cereus NVH0597-99]
 gi|196046471|ref|ZP_03113696.1| radical SAM domain protein [Bacillus cereus 03BB108]
 gi|218902549|ref|YP_002450383.1| radical SAM domain protein [Bacillus cereus AH820]
 gi|225863305|ref|YP_002748683.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus cereus 03BB102]
 gi|227815811|ref|YP_002815820.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus anthracis str. CDC 684]
 gi|229604565|ref|YP_002865855.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus anthracis str. A0248]
 gi|254682495|ref|ZP_05146356.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus anthracis str. CNEVA-9066]
 gi|254726158|ref|ZP_05187940.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus anthracis str. A1055]
 gi|254733911|ref|ZP_05191625.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus anthracis str. Western North America USA6153]
 gi|254740399|ref|ZP_05198090.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus anthracis str. Kruger B]
 gi|254753789|ref|ZP_05205824.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus anthracis str. Vollum]
 gi|254758886|ref|ZP_05210913.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus anthracis str. Australia 94]
 gi|30255296|gb|AAP25305.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus anthracis str. Ames]
 gi|47501779|gb|AAT30455.1| radical SAM domain protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178203|gb|AAT53579.1| radical SAM domain protein [Bacillus anthracis str. Sterne]
 gi|51977464|gb|AAU19014.1| radical SAM domain protein [Bacillus cereus E33L]
 gi|118416137|gb|ABK84556.1| preQ(0) biosynthesis protein QueE [Bacillus thuringiensis str. Al
           Hakam]
 gi|164713904|gb|EDR19426.1| radical SAM domain protein [Bacillus anthracis str. A0488]
 gi|167512799|gb|EDR88173.1| radical SAM domain protein [Bacillus anthracis str. A0193]
 gi|167530221|gb|EDR92947.1| radical SAM domain protein [Bacillus anthracis str. A0442]
 gi|170128851|gb|EDS97717.1| radical SAM domain protein [Bacillus anthracis str. A0389]
 gi|170669323|gb|EDT20066.1| radical SAM domain protein [Bacillus anthracis str. A0465]
 gi|172082886|gb|EDT67949.1| radical SAM domain protein [Bacillus anthracis str. A0174]
 gi|190560754|gb|EDV14729.1| radical SAM domain protein [Bacillus anthracis Tsiankovskii-I]
 gi|195991948|gb|EDX55911.1| radical SAM domain protein [Bacillus cereus W]
 gi|196022655|gb|EDX61337.1| radical SAM domain protein [Bacillus cereus 03BB108]
 gi|196028404|gb|EDX67012.1| radical SAM domain protein [Bacillus cereus NVH0597-99]
 gi|218535375|gb|ACK87773.1| radical SAM domain protein [Bacillus cereus AH820]
 gi|225789486|gb|ACO29703.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus cereus 03BB102]
 gi|227002910|gb|ACP12653.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus anthracis str. CDC 684]
 gi|229268973|gb|ACQ50610.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus anthracis str. A0248]
          Length = 238

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 21/179 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           +   +       D+  E    G +   +  ++GG P+L  ++  L+  L + G   A+ET
Sbjct: 49  SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170
            G+   +    ID I +SPK          Q+L  V  ++     +     +  +DFE 
Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEY 167


>gi|323488449|ref|ZP_08093696.1| hypothetical protein GPDM_03875 [Planococcus donghaensis MPA1U2]
 gi|323397956|gb|EGA90755.1| hypothetical protein GPDM_03875 [Planococcus donghaensis MPA1U2]
          Length = 235

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 36/195 (18%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           MK   + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MK-IPVMEIFGPTVQGEGMVMGQKTMFVRTAGCDY-----------SCSWCDSKFTW-DG 47

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118
           T  G     Q AD+IEE    G     +  ++GG P L   +  L+   +++G+++AVET
Sbjct: 48  T--GTSVSKQPADIIEELIHIGGSNFSHVTISGGNPALHKGIGELVDLCHQQGWKVAVET 105

Query: 119 NGTI--EPPQGIDWICVSPKAGCD-------------LKIKGGQ-ELKLV-FPQVNVSPE 161
             +I  E    ID I +SPK                  K++     LK+V F Q + S  
Sbjct: 106 QASIWQEWMPTIDDITLSPKPPSSGMKTDFAKLDLFLEKLQTANVSLKVVIFDQDDFSYA 165

Query: 162 NYIGFDFER--FSLQ 174
            ++   +    F LQ
Sbjct: 166 EFLHQRYPHVPFFLQ 180


>gi|83953730|ref|ZP_00962451.1| radical SAM domain protein [Sulfitobacter sp. NAS-14.1]
 gi|83841675|gb|EAP80844.1| radical SAM domain protein [Sulfitobacter sp. NAS-14.1]
          Length = 236

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 83/239 (34%), Gaps = 47/239 (19%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    I E+F  T+QGEG   G   VF R  GC+            +C +CD+       
Sbjct: 1   MSQLRIAEVFGPTIQGEGALIGEPTVFVRTGGCDY-----------RCAWCDSMHAVDPA 49

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
            +    ++     +  E     +       L+GG P +Q   PLIQ  +  G+  A ET 
Sbjct: 50  FRHDWASMST-DAVWNEVQRLSDNTPLTVSLSGGNPAIQDFAPLIQLGHAAGYRFACETQ 108

Query: 120 GTIEPP--QGIDWICVSPKAGCDLKI---------KGGQE------LKLV-FPQVNVSPE 161
           G+I  P    +D + +SPK     +              E      +K+V F   +    
Sbjct: 109 GSIAKPWFGQLDCLVLSPKPPSSGETVDWAAFDRCVAAGETAAQTVMKIVIFDDADYDWA 168

Query: 162 NYIGFDFER--FSLQP----------MDGPFLEENTNLAISYCFQNPKW---RLSVQTH 205
                 + +    LQP          +D   L +     +     + +W   RL  Q H
Sbjct: 169 RDAATRYPQLPLYLQPGNDEVDPSVAVDQQVLADKLLWLVDKTMAD-RWFTPRLLPQLH 226


>gi|312865269|ref|ZP_07725497.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Streptococcus downei F0415]
 gi|311099380|gb|EFQ57596.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Streptococcus downei F0415]
          Length = 242

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 67/165 (40%), Gaps = 21/165 (12%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             I EIF  T QGEG   G+  +F R  GC+             C +CD+ F      K 
Sbjct: 13  LPILEIFGPTFQGEGRAIGQKTMFIRTGGCDY-----------HCDWCDSAFTWDGSEKA 61

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
                DQ+   I E    G  +  Y  L+GG P LQ      L+  L  RG  +AVET G
Sbjct: 62  TPMTSDQV---IAELDKLGTYD--YVTLSGGNPCLQAANMEELVHKLKSRGVTLAVETQG 116

Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY 163
           +   +    ID + +SPK          + L  +  +++ S   Y
Sbjct: 117 SRWQDWLLDIDQVTLSPKPPSSKMEVNMETLDFIVGKLDSSKVTY 161


>gi|149919125|ref|ZP_01907609.1| hypothetical protein PPSIR1_35157 [Plesiocystis pacifica SIR-1]
 gi|149820055|gb|EDM79476.1| hypothetical protein PPSIR1_35157 [Plesiocystis pacifica SIR-1]
          Length = 261

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 63/139 (45%), Gaps = 19/139 (13%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             ++E F+++QGEG   G  + F R SGCNL           +C +CDT        +G 
Sbjct: 18  LRVQERFVSIQGEGSLVGVRSSFVRVSGCNL-----------RCVWCDTPRTSW-APEGE 65

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
           R ++D L D     W     + R+ VLTGGEPLL      L   L   G  + +ET G++
Sbjct: 66  RASLDALVD-----WCGAPGQPRHVVLTGGEPLLFPACAELSARLRAAGHHLTIETAGSL 120

Query: 123 EPPQ-GIDWICVSPKAGCD 140
                  D + +SPK    
Sbjct: 121 WCEGVEADLMSISPKLSHS 139


>gi|30019493|ref|NP_831124.1| organic radical activating protein [Bacillus cereus ATCC 14579]
 gi|29895037|gb|AAP08325.1| Organic radical activating enzyme [Bacillus cereus ATCC 14579]
          Length = 238

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 16/160 (10%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           +   +       D+ +E    G +   +  ++GG P L  ++  L+  L + G   A+ET
Sbjct: 49  SAKDQIRQMTPEDIWDELVAIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156
            G+   +    ID I +SPK          Q L  +  ++
Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMKTDFQRLDAIIQKL 148


>gi|288931807|ref|YP_003435867.1| radical SAM protein [Ferroglobus placidus DSM 10642]
 gi|288894055|gb|ADC65592.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642]
          Length = 224

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 93/247 (37%), Gaps = 59/247 (23%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV----- 55
           MK   I EIF ++QGEG   G   +F RF GCNL            C +CDT +      
Sbjct: 1   MKA-KISEIFYSIQGEGIFCGVRQLFIRFYGCNL-----------NCYYCDTTYNEDCVN 48

Query: 56  -GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
                 +     +D +  +I+E      +       TGGEPLL  D   I +L K   + 
Sbjct: 49  YAYNEVRKNPVELDYVQRIIDE-----SERIHSVSFTGGEPLLYAD--FIASLKKT-KKF 100

Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKGG----QEL--------------------- 149
            +E+N T+  P+    +        DLK++       E+                     
Sbjct: 101 YLESNMTL--PEKAKKVRFFDVVAGDLKVREAVENYDEVFERTVKCYKILRDTRKRVTFC 158

Query: 150 KLVFP-----QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQT 204
           K+V P     +  ++    I      F LQP+ G F E    L      +    R+  Q 
Sbjct: 159 KIVLPPKFNFEEVLNSAMEIKDYVRCFVLQPVFGTFGENILKLQ-EAILEFSDARIIPQV 217

Query: 205 HKFIGIR 211
           HK++G+R
Sbjct: 218 HKYLGVR 224


>gi|212639793|ref|YP_002316313.1| Organic radical activating enzyme [Anoxybacillus flavithermus WK1]
 gi|212561273|gb|ACJ34328.1| Organic radical activating enzyme [Anoxybacillus flavithermus WK1]
          Length = 240

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 20/180 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M+   + E+F  T+QGEG   G+  +F R +GC+            +CR+CD+ F    G
Sbjct: 1   MEHIPVIEMFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCRWCDSSFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +           D+ ++    G     +  ++GG P LL+    LI  L +    I +ET
Sbjct: 49  SAKNEVKQMTAEDIWQQLKQLGGDRFNHVTISGGNPALLKGLRALISLLKEHNIRIGLET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN----YIGFDFERFS 172
            G++  +    ID + +SPK            L  +  ++     +     + FD E F+
Sbjct: 109 QGSVWQDWFYDIDDLTISPKPPSSNMKTNFTMLDTIMERLTAHRGHVSLKVVVFDDEDFA 168


>gi|94264593|ref|ZP_01288377.1| Radical SAM [delta proteobacterium MLMS-1]
 gi|93454947|gb|EAT05184.1| Radical SAM [delta proteobacterium MLMS-1]
          Length = 224

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 34/184 (18%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF ++QGE   AG   +F R +GCNL           +C +CD  +   +   G  Y
Sbjct: 9   LSEIFYSIQGESTLAGYPCLFIRLAGCNL-----------RCSYCDARYTYEE--PGQSY 55

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE- 123
           +++ +   + E    G +      +TGGEPLLQ  V PL+  L  RG ++ +ETNGT   
Sbjct: 56  SLEGVLKAMAEVGP-GGRPVELVEITGGEPLLQEGVYPLLDVLLARGHQVLLETNGTRSL 114

Query: 124 --PPQGI----DWICVSPKAGCD--------LKIKGGQELKLVFPQVNVSPENYIGFDFE 169
              P  +    D  C  P +G           ++ G  E+K V    N +  ++      
Sbjct: 115 ARLPAAVRCIMDIKC--PASGMAAHFMPENLHRLTGDDEIKFVI--GNRADYDWAKALLN 170

Query: 170 RFSL 173
              L
Sbjct: 171 HHQL 174


>gi|119357772|ref|YP_912416.1| radical SAM domain-containing protein [Chlorobium phaeobacteroides
           DSM 266]
 gi|119355121|gb|ABL65992.1| Radical SAM domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 223

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 90/234 (38%), Gaps = 47/234 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +K  SI EIF ++QGE   AG    F R +GC              C FCDT +    G 
Sbjct: 3   LKELSISEIFHSIQGESSFAGWPCAFVRLAGC-----------GNGCNFCDTTYAETDGF 51

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
                 + ++ D+I +   T         +TGGEPLLQ  V PL+Q L   G  + +ET 
Sbjct: 52  ------MLEIPDIIMQ---TQAFRAPIIEITGGEPLLQPAVYPLMQQLCNLGETVLLETG 102

Query: 120 GTIEPPQG-------IDWICVSPKA-------GCDLKIKGGQELKLVFPQVNVSPENYIG 165
           G +   +        ID    S             L +  G++L   F +  +   +   
Sbjct: 103 GFLSVDKVDSRVHKIIDLKPPSSGVCERNCPENITLALHAGKKLSQTF-EFKIVVASRED 161

Query: 166 FD-FERFSLQ--------PMDGPFLE--ENTNLAISYCFQNPKWRLSVQTHKFI 208
           +D  +   LQ         M G   E  E + LA          R+ +Q HK+I
Sbjct: 162 YDWAKALLLQHQLYCSCIVMMGVIHEKLEPSTLAEWILRDRLPVRMQLQLHKYI 215


>gi|49481559|ref|YP_035567.1| radical SAM domain-containing protein [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|49333115|gb|AAT63761.1| radical SAM domain protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 238

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 21/179 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           +   +       D+  E    G +   +  ++GG P+L  ++  L+  L + G   A+ET
Sbjct: 49  SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170
            G+   +    ID I +SPK          Q+L  V  ++     +     +  +DFE 
Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSAMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEY 167


>gi|224475851|ref|YP_002633457.1| putative organic radical activating enzyme [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222420458|emb|CAL27272.1| putative organic radical activating enzyme [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 237

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 21/178 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+             C +CD+ F    G
Sbjct: 1   MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------HCSWCDSKFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +   +  +    ++  +    G     +  ++GG P L++    L+     +  E A+ET
Sbjct: 49  SAKDQIEMMTAEEIYHQLKEVGGDYFNHVTISGGNPALIKGIQELVDLFEDKNIETALET 108

Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-----VNVSPENYIGFDFE 169
            G+   P  + I+ + +SPK          + L  V  Q     +N+    +   DFE
Sbjct: 109 QGSRYQPWMRQINDLTISPKPPSSGMKPNLEILDDVIAQCVLESLNLKVVIFEDKDFE 166


>gi|223042809|ref|ZP_03612857.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus capitis SK14]
 gi|222443663|gb|EEE49760.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus capitis SK14]
          Length = 237

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 16/159 (10%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + E+F  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEVFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +      +    ++ EE    G     +  ++GG P L++    L+    ++    A+ET
Sbjct: 49  SAKEDIRLLTAEEIYEELLEVGGNHFNHVTISGGNPALIKGIQDLVDLFEEKNIYTALET 108

Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155
            G+   P    I+ + +SPK    +       L  V  Q
Sbjct: 109 QGSKFQPWMTQINDLTISPKPPSSMMKPNLNTLDSVIDQ 147


>gi|296329700|ref|ZP_06872185.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305674097|ref|YP_003865769.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296153198|gb|EFG94062.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305412341|gb|ADM37460.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 243

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 16/154 (10%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G+  
Sbjct: 5   IPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAK 52

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121
                    ++  E    G     +  ++GG P LL+     I+ L +     A+ET GT
Sbjct: 53  KDIRWMTAEEIFAELKDIGGDAFSHVTISGGNPALLKQLDAFIELLKENNIRAALETQGT 112

Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
           +  +    ID + +SPK      +   Q+L  + 
Sbjct: 113 VYQDWFTLIDDLTISPKPPSSKMVTNFQKLDHIL 146


>gi|124516513|gb|EAY58021.1| putative radical SAM family protein [Leptospirillum rubarum]
 gi|206603410|gb|EDZ39890.1| Putative radical activating enzyme [Leptospirillum sp. Group II
           '5-way CG']
          Length = 212

 Score =  132 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 78/228 (34%), Gaps = 49/228 (21%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            I E F ++QGE  ++G    F R +GC L           +CR+CDT +       G  
Sbjct: 2   KITETFRSIQGESRYSGWPCFFIRTTGCPL-----------RCRWCDTTYSFY---GGEE 47

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
             VD L                   +TGGEP +Q ++P L Q L   G  + +ET+G   
Sbjct: 48  RTVDSLV------GEAVSSGTSLVEITGGEPFVQPELPELCQKLLDLGKTVLIETSGGFP 101

Query: 124 PPQGIDWICVSPKAGCDLKIKGG-----------------QELKLVFPQVNVSPENYIGF 166
            P G++  C   +   DLK  G                   E+K V         +    
Sbjct: 102 VPSGLNREC---RLIVDLKPPGSGMEDWMKAENFAELGTEDEIKAVLTGREDFDWSVQKL 158

Query: 167 DFERFS------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           +             P+ G        LA          R+ +Q HK +
Sbjct: 159 EEWGIWGRVPVTFSPVFGECDPR--ELARWVLDSGLPVRVQIQLHKIL 204


>gi|222150713|ref|YP_002559866.1| hypothetical protein MCCL_0463 [Macrococcus caseolyticus JCSC5402]
 gi|222119835|dbj|BAH17170.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 236

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 17/161 (10%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           MK   + EIF  T+QGEG   GR  +F R +GC+             C +CD+ F    G
Sbjct: 1   MK-IPVLEIFGPTIQGEGAVIGRKTMFVRTAGCDF-----------SCAWCDSKFTW-DG 47

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           T      +     + E        +  +  ++GG P L  ++   +  L  +G E+A+ET
Sbjct: 48  TMKDEIEMLLPETIYERLQSIAPNQFNHVTISGGNPALIKNLAGFVSLLQDKGIEVALET 107

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
            GT        ID + +SPK           +L  V  +++
Sbjct: 108 QGTKFQSWMTEIDQLTISPKPPSSTMTHDLDQLDAVLHELD 148


>gi|320108730|ref|YP_004184320.1| Radical SAM domain-containing protein [Terriglobus saanensis
           SP1PR4]
 gi|319927251|gb|ADV84326.1| Radical SAM domain protein [Terriglobus saanensis SP1PR4]
          Length = 229

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 88/236 (37%), Gaps = 54/236 (22%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           E++ ++QGE    G   +F R +GCNL           +C +CD+++    GT    +  
Sbjct: 5   ELYKSVQGESSFTGMPCIFVRSAGCNL-----------RCAWCDSEYTFSGGTP---FTE 50

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNK--RGFEIAVETNGTIE 123
           D++   IE          R    TGGEP+L     +PL++ L    RG+ + +ET+G   
Sbjct: 51  DEIVAQIE-----ALAPCRLIEFTGGEPMLHAKELLPLMRRLLADPRGYTLMMETSGERP 105

Query: 124 -------PPQGIDWICV-------SPKAGCDLKIKGGQELKLVFPQ-------VNVSPEN 162
                    + +D  C        S +      +    E+K V           +   E+
Sbjct: 106 LQDVPTAVHKIVDVKCPGAGSAFGSFRMSNLDILTQRDEVKFVLRDRVDYEFARDFIREH 165

Query: 163 YIGFDFERFSLQPMDGPF-----LEENTNL----AISYCFQN-PKWRLSVQTHKFI 208
            +        L P            +N  L     + +   +    RLS+Q HKFI
Sbjct: 166 SLNEKAGGILLSPAFIKVPSILRSADNMELDARHLVDWMLADGLDARLSLQVHKFI 221


>gi|162450849|ref|YP_001613216.1| radical activating enzyme [Sorangium cellulosum 'So ce 56']
 gi|161161431|emb|CAN92736.1| radical activating enzyme [Sorangium cellulosum 'So ce 56']
          Length = 217

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 82/238 (34%), Gaps = 59/238 (24%)

Query: 1   MK--LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
           MK     + EI+ ++QGE   AG    F R +GCNL           +C +CDT      
Sbjct: 1   MKEDTLVVHEIYASVQGESTFAGLPCTFVRLTGCNL-----------RCAWCDTSQAFYG 49

Query: 59  GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVE 117
           G +  R       +++E     G        LTGGEPLLQ    PL+  L   G  + VE
Sbjct: 50  GKRIRR------GEVLERALALG---TPLVELTGGEPLLQPGSFPLLAELCDAGRTVLVE 100

Query: 118 TNGTIEPPQGIDWICVSPKAG--CDLKIKGG-----------------QELKLVFPQ--- 155
           T+G        D   V P+     DLK  G                   E+K V      
Sbjct: 101 TSG------EADVSRVDPRVHKIMDLKAPGSGESHRNRWSNLDHLTPRDEIKFVLADRAD 154

Query: 156 ----VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN-PKWRLSVQTHKFI 208
                +   E  +           + G          + +   +  + R+ VQ HK I
Sbjct: 155 YAWMRDTIRERRLDARGVTLLASCVWGKLSP---KELVQWVLDDGLRVRVQVQLHKVI 209


>gi|55820876|ref|YP_139318.1| putative coenzyme PQQ synthesis protein [Streptococcus thermophilus
           LMG 18311]
 gi|55822792|ref|YP_141233.1| putative coenzyme PQQ synthesis protein [Streptococcus thermophilus
           CNRZ1066]
 gi|116627685|ref|YP_820304.1| putative coenzyme PQQ synthesis protein [Streptococcus thermophilus
           LMD-9]
 gi|55736861|gb|AAV60503.1| hypothetical protein, coenzyme PQQ synthesis homologue
           [Streptococcus thermophilus LMG 18311]
 gi|55738777|gb|AAV62418.1| hypothetical protein, coenzyme PQQ synthesis homologue
           [Streptococcus thermophilus CNRZ1066]
 gi|116100962|gb|ABJ66108.1| Pyruvate-formate lyase-activating enzyme [Streptococcus
           thermophilus LMD-9]
          Length = 238

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 21/159 (13%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K 
Sbjct: 9   LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120
            R   D++ + ++           Y  L+GG P  L      L+  L  R   +AVET G
Sbjct: 58  TRMTADEVIEALDALGTYD-----YVTLSGGNPALLAANMAELVSKLKARDVTLAVETQG 112

Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
           +   E  + ID + +SPK          + L  +  Q++
Sbjct: 113 SRWQEWLREIDQVTLSPKPPSSKMEVNMETLDFIVSQLD 151


>gi|304408385|ref|ZP_07390032.1| Radical SAM domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304342674|gb|EFM08521.1| Radical SAM domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 240

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 86/234 (36%), Gaps = 46/234 (19%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
               + EIF T++GEG  AG   VF R  GCNL           +C +CDT +       
Sbjct: 18  SKLPMVEIFETVEGEGTRAGFPTVFVRLFGCNL-----------RCVWCDTTYSYPPAKS 66

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRG--FEIAVE 117
               ++ ++ + ++          R+   TGGEPLL  D    L++AL +     ++ VE
Sbjct: 67  EYSLSIREIVEKVKS------YRSRHICFTGGEPLLYGDRSAMLLKALAEIDGIVDVHVE 120

Query: 118 TNGTIEPPQGIDWICVS-PKAGCDLKIKGG-----------------QELKLVFPQVNVS 159
           TNG I     ++ + +   +   D K+                     E+K V       
Sbjct: 121 TNGAIGLAPFLESVPLPNVRYVMDYKLPDSGENDKMEMANFELLRPQDEIKFVIASDQDF 180

Query: 160 PENYIGFDFERFSLQ--PMDGPFLEENTNL-AISYCFQ--NPKWRLSVQTHKFI 208
                     R+  Q  PM  P  E       +    +      +L++Q HK I
Sbjct: 181 DAAVETL--RRYPTQALPMFSPVWESMPPAKLVDRMLEAGLSGVKLNMQLHKII 232


>gi|206977517|ref|ZP_03238411.1| radical SAM domain protein [Bacillus cereus H3081.97]
 gi|217958918|ref|YP_002337466.1| radical SAM domain protein [Bacillus cereus AH187]
 gi|222095075|ref|YP_002529135.1| radical sam domain protein [Bacillus cereus Q1]
 gi|206744235|gb|EDZ55648.1| radical SAM domain protein [Bacillus cereus H3081.97]
 gi|217067272|gb|ACJ81522.1| radical SAM domain protein [Bacillus cereus AH187]
 gi|221239133|gb|ACM11843.1| radical SAM domain protein [Bacillus cereus Q1]
          Length = 238

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 90/240 (37%), Gaps = 47/240 (19%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           +   +       D+  E    G +   +  ++GG P+L  ++  L+  L + G   A+ET
Sbjct: 49  SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER- 170
            G+   +    ID I +SPK          Q+L  V  ++     +     +  +DFE  
Sbjct: 109 QGSKWQDWLLEIDEITISPKPPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEYA 168

Query: 171 -----------FSLQPM--DGPFLEENT---NLAISY---------CFQNPKWRLSVQTH 205
                      F LQ    D   +++      L   Y         C +    ++  Q H
Sbjct: 169 VKMHERYPEVPFFLQVGNDDTKTVDDAMLIKKLLDKYEWLIEKAVNCKEMNNAKVLPQLH 228


>gi|308173345|ref|YP_003920050.1| QueE [Bacillus amyloliquefaciens DSM 7]
 gi|307606209|emb|CBI42580.1| QueE [Bacillus amyloliquefaciens DSM 7]
 gi|328553728|gb|AEB24220.1| QueE [Bacillus amyloliquefaciens TA208]
 gi|328911423|gb|AEB63019.1| queuosine biosynthesis protein QueE [Bacillus amyloliquefaciens
           LL3]
          Length = 243

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 16/160 (10%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G+  
Sbjct: 5   IPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAK 52

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121
                    D+  E    G     +  ++GG P LL+    LI  L   G   A+ET GT
Sbjct: 53  KDIRWMTAEDIYRELREIGGDAFSHVTISGGNPALLKQLDALILLLKDHGVRAALETQGT 112

Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
           +  +    I+ + +SPK           +L  +   ++ +
Sbjct: 113 VYQDWFTMINDLTISPKPPSSGMTTDFAKLDHIVSSLDAA 152


>gi|293365938|ref|ZP_06612641.1| ExsD protein [Streptococcus oralis ATCC 35037]
 gi|307702341|ref|ZP_07639299.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           oralis ATCC 35037]
 gi|322375722|ref|ZP_08050234.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Streptococcus sp. C300]
 gi|291315616|gb|EFE56066.1| ExsD protein [Streptococcus oralis ATCC 35037]
 gi|307624144|gb|EFO03123.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           oralis ATCC 35037]
 gi|321279430|gb|EFX56471.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Streptococcus sp. C300]
          Length = 238

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 21/159 (13%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K 
Sbjct: 9   LPVLEIFGPTFQGEGRAIGQKTMFVRTTGCDY-----------HCDWCDSAFTWDGSEKP 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120
            R   D++   +++          Y  L+GG P  L      L+  L +RG  +AVET G
Sbjct: 58  TRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQG 112

Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
           +      + ID + +SPK          + L  +  Q++
Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLD 151


>gi|324325459|gb|ADY20719.1| radical SAM domain-containing protein [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 238

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 21/179 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           +   +       D+  E    G +   +  ++GG P L  ++  L+  L + G   A+ET
Sbjct: 49  SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFER 170
            G+   +    ID I +SPK          Q+L     KL    +++    +  +DFE 
Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMKTDFQKLDAMIQKLSGKDISLKVVVFDDYDFEY 167


>gi|229541150|ref|ZP_04430210.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus coagulans 36D1]
 gi|229325570|gb|EEN91245.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus coagulans 36D1]
          Length = 241

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 16/162 (9%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
               + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G 
Sbjct: 3   SKIPVIEIFGPTIQGEGMVIGKKTMFVRTAGCDY-----------ACSWCDSAFTW-NGE 50

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
           + GR  +    ++ ++   TG +   +  ++GG PLL   +  L+  L       AVET 
Sbjct: 51  EKGRIALMTAEEIFQKLKETGGENFSHVTISGGNPLLLKGLGELVDLLKTHQIRTAVETQ 110

Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
           G+        +D + +SPK          + L  +  Q+ ++
Sbjct: 111 GSRWQNWLPDVDDVTISPKPPSSGMHTDFETLDRMIEQLTLA 152


>gi|124008813|ref|ZP_01693501.1| coenzyme PQQ synthesis protein, conjectural [Microscilla marina
           ATCC 23134]
 gi|123985604|gb|EAY25489.1| coenzyme PQQ synthesis protein, conjectural [Microscilla marina
           ATCC 23134]
          Length = 250

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/216 (30%), Positives = 84/216 (38%), Gaps = 43/216 (19%)

Query: 1   MKLYSIK---EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG- 56
           MK+       EIF T+QGEG   G+  VF R S CNL            C +CDTD+   
Sbjct: 1   MKIAKFNGKGEIFYTIQGEGKSLGKPTVFIRSSLCNL-----------HCIWCDTDYTWN 49

Query: 57  ----------IQGTKGGRYN-VDQLADLIEEQWI--TGEKEGRYCVLTGGEPLLQVD--V 101
                      Q     +Y+  +Q+ +L   Q I        +  VLTGGEPLLQ    V
Sbjct: 50  WKNTPYPHVFDQTPGYEKYDKKEQIVELSTAQIIEEIAPYACKNLVLTGGEPLLQQKAWV 109

Query: 102 PLIQAL--NKRGFEIAVETNGTIEPPQG----IDWICVSPKAGCDLKIKGGQELKLVFPQ 155
            L+  L     G+   VETNGT+ P       ID   VSPK          +E    +  
Sbjct: 110 ELMAQLRKKDAGYWFEVETNGTLLPSSEFDALIDQYNVSPKLENSNNSMKIREKPEAYAF 169

Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191
              SP+ +  F   +          LEE   L   Y
Sbjct: 170 FRQSPKAWFKFVIAQ-------QADLEEVLELIKKY 198


>gi|312278215|gb|ADQ62872.1| Pyruvate-formate lyase-activating enzyme [Streptococcus
           thermophilus ND03]
          Length = 238

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 21/159 (13%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K 
Sbjct: 9   LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120
            R   D++ + ++           Y  L+GG P  L      L+  L  R   +AVET G
Sbjct: 58  TRMTADEVIEALDALGTYD-----YVTLSGGNPALLAANMAELVSKLKARDVTLAVETQG 112

Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
           +   E  + ID + +SPK          + L  +  Q++
Sbjct: 113 SRWQEWLREIDQVTLSPKPPSSKMEVNMETLDFIVSQLD 151


>gi|158520514|ref|YP_001528384.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158509340|gb|ABW66307.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 212

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 84/235 (35%), Gaps = 57/235 (24%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M L+ + E+F ++QGE   AG    F R +GCNL            C +CDT +    GT
Sbjct: 1   MSLH-VSELFFSIQGESLDAGLACAFVRLAGCNLC-----------CAYCDTAYARQGGT 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETN 119
                 + ++ D +               +TGGEPLLQ + PL IQ L   G+ + +ETN
Sbjct: 49  P---MEIPEILDRVARFG------CSLVEITGGEPLLQKETPLLIQRLLSVGYRVLLETN 99

Query: 120 GTIEP-------PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
           GT           + +D  C S         +    L     QV     +   + F +  
Sbjct: 100 GTQNIGLVDKSCIRIVDVKCPSSGESEKNDARNLDRLA-AHDQVKFVISDRTDYLFAK-- 156

Query: 173 LQPMDGPFLEENTNLAISYCF-----------QNPKW--------RLSVQTHKFI 208
                       T +A  +             Q   W        RL +Q HK +
Sbjct: 157 ------KTAGRITAVAPGHILFSTVHGVLDPAQLAHWMLADGLPVRLHLQLHKIL 205


>gi|126651679|ref|ZP_01723882.1| radical SAM domain protein [Bacillus sp. B14905]
 gi|126591628|gb|EAZ85734.1| radical SAM domain protein [Bacillus sp. B14905]
          Length = 242

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 76/199 (38%), Gaps = 37/199 (18%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKVPVIEIFGPTIQGEGMVVGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           +           ++  E    G     +  ++GG P L  ++  LI  L +   +I VET
Sbjct: 49  SGKHLIVQMTAGEIWSELKRLGGHGFSFVTISGGNPALYPNLEALIAILKENDIKIGVET 108

Query: 119 NGTIE--PPQGIDWICVSPKAGCD-------------LKIKGGQ-----ELKL-VFPQVN 157
            G+        ID + +SPK                  K+KG        LK+ VF Q +
Sbjct: 109 QGSRWQNWMYDIDELTISPKPPSSGMTIDHSVLADIFEKLKGRNRNHNISLKIVVFNQED 168

Query: 158 VSPENYIGFDFER--FSLQ 174
                 I   F R  F LQ
Sbjct: 169 YDFAKQIHHRFPRIPFYLQ 187


>gi|154685784|ref|YP_001420945.1| YkvL [Bacillus amyloliquefaciens FZB42]
 gi|154351635|gb|ABS73714.1| YkvL [Bacillus amyloliquefaciens FZB42]
          Length = 243

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 16/160 (10%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G+  
Sbjct: 5   IPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAK 52

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121
                    D+  E    G     +  ++GG P LL+    LI  L + G   A+ET GT
Sbjct: 53  KDIRWMTAEDIYRELREIGGDAFSHVTISGGNPALLKQLDALILLLKEHGVRAALETQGT 112

Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
           +  +    I+ + +SPK           +L  +   ++ +
Sbjct: 113 VYQDWFTMINDLTISPKPPSSGMTTDFAKLDHIVSSLDAA 152


>gi|172058910|ref|YP_001815370.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Exiguobacterium sibiricum 255-15]
 gi|171991431|gb|ACB62353.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Exiguobacterium sibiricum 255-15]
          Length = 238

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 73/186 (39%), Gaps = 32/186 (17%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T QGEG   G+  +F R  GC+             C +CD+ F      K 
Sbjct: 10  IPVLEIFGPTFQGEGRSIGQKTMFVRTGGCDY-----------SCAWCDSAFTWDGSEKP 58

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
                D++   ++     G     +  ++GG PLL   +  L+ AL  RG  ++VET G+
Sbjct: 59  DLLTADEILAQLDALGSYG-----HVTISGGNPLLHASIGTLVDALKSRGITMSVETQGS 113

Query: 122 IE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDF---- 168
                   I+ + +SPK            L + F +       V +   +    DF    
Sbjct: 114 YWQNWVLDIEDVTISPKPPSSGMTVDYDRLDVFFKRLPEQQRAVKIVIFDEADLDFAAAI 173

Query: 169 -ERFSL 173
            +R++L
Sbjct: 174 SDRYAL 179


>gi|289167418|ref|YP_003445687.1| hypothetical protein smi_0570 [Streptococcus mitis B6]
 gi|288906985|emb|CBJ21819.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 238

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 21/159 (13%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K 
Sbjct: 9   LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120
            R   D++   +++          Y  L+GG P  L      L+  L +RG  +AVET G
Sbjct: 58  IRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQG 112

Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
           +      + ID + +SPK          + L  +  Q++
Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLD 151


>gi|331265893|ref|YP_004325523.1| hypothetical protein SOR_0520 [Streptococcus oralis Uo5]
 gi|326682565|emb|CBZ00182.1| conserved hypothetical protein [Streptococcus oralis Uo5]
          Length = 238

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 21/159 (13%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K 
Sbjct: 9   LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120
            R   D++   +++          Y  L+GG P  L      L+  L +RG  +AVET G
Sbjct: 58  TRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAQLVTKLKERGVTLAVETQG 112

Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
           +      + ID + +SPK          + L  +  Q++
Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLD 151


>gi|314933021|ref|ZP_07840387.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus caprae C87]
 gi|313654340|gb|EFS18096.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus caprae C87]
          Length = 237

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 82/207 (39%), Gaps = 34/207 (16%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + E+F  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEVFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +      +    ++ EE    G     +  ++GG P L++    L+    ++    A+ET
Sbjct: 49  SAKEDIRLLTAEEIYEELLEVGGNHFNHVTISGGNPALIKGIQDLVDLFEEKNIYTALET 108

Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169
            G+   P    I+ + +SPK    +       L  V  Q       + V   N   ++F 
Sbjct: 109 QGSKFQPWMTQINDLTISPKPPSSMMKPNLDILDSVIEQCIDDTLNLKVVIFNEEDYEFA 168

Query: 170 R----------FSLQPMDGPFLEENTN 186
           +          F LQ +  P+LE+   
Sbjct: 169 KMIHHRYPSIPFYLQ-VGNPYLEDEVE 194


>gi|254469727|ref|ZP_05083132.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Pseudovibrio sp. JE062]
 gi|211961562|gb|EEA96757.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Pseudovibrio sp. JE062]
          Length = 246

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 85/242 (35%), Gaps = 49/242 (20%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M   SI EIF  T+QGEG   G   VF R  GC+            +C +CDT    +  
Sbjct: 7   MSKLSISEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDTLHA-VDS 54

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
                ++     D+ ++       +     L+GG P +Q    LI     +G++ A+ET 
Sbjct: 55  AYRHTWDQMDSEDVWKKVEELSCGQPITVSLSGGNPAIQDFSKLIALGKAKGYKFAIETQ 114

Query: 120 GTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV-------------NVSPENYI 164
           G++  +    +D + +SPK     ++    +                     +    ++ 
Sbjct: 115 GSVARDWFADLDTLVLSPKPPSSGEVVNWDKFDACLDAALNTATCVIKVVVFDDVDYDWA 174

Query: 165 GFDFERF-----SLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQ 203
               ER+      LQP +    P  +++  + +        W             R+  Q
Sbjct: 175 KEVSERYPYLPMYLQPGNHTPPPPEDDDAQIDMDGIMDRMHWLVDKTVSDQWFKPRILPQ 234

Query: 204 TH 205
            H
Sbjct: 235 LH 236


>gi|153008343|ref|YP_001369558.1| radical SAM domain-containing protein [Ochrobactrum anthropi ATCC
           49188]
 gi|151560231|gb|ABS13729.1| Radical SAM domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 246

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 78/219 (35%), Gaps = 36/219 (16%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             I EIF  TLQGEG   G   VF R  GC+            +C +CD+    ++    
Sbjct: 10  IRIAEIFGPTLQGEGVLIGEPTVFVRTGGCDY-----------RCVWCDSLHA-VESRFR 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +    +  +  E       +     L+GG P +Q   PLI+     G+  A+ET G++
Sbjct: 58  REWKAMSVEAVWGEVTTLSRNKPLTVSLSGGNPAIQPLGPLIEHGKTEGYRFALETQGSV 117

Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF----DFER------ 170
             +    +D + +SPK            L +       +P   + F    D +       
Sbjct: 118 AQDWFSALDTLVLSPKPPSSGMDADFDALAVCVEAAGRTPRTVLKFVIFDDADYVFAKDV 177

Query: 171 --------FSLQPMD-GPFLEENTNLAISY--CFQNPKW 198
                     LQP +  P   E  + AI      +  +W
Sbjct: 178 ASQYSGLPVYLQPGNHTPPPPEAHDAAIDIDGIMRRMEW 216


>gi|218233066|ref|YP_002366125.1| radical SAM domain protein [Bacillus cereus B4264]
 gi|218161023|gb|ACK61015.1| radical SAM domain protein [Bacillus cereus B4264]
          Length = 238

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 16/160 (10%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMIVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
           +   +       D+ +E    G +   +  ++GG P L  ++  L+  L + G   A+ET
Sbjct: 49  SAKDQIRQMTPEDIWDELVAIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156
            G+   +    ID I +SPK          Q L  +  ++
Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMKTDFQRLDAIIQKL 148


>gi|83942510|ref|ZP_00954971.1| radical SAM domain protein [Sulfitobacter sp. EE-36]
 gi|83846603|gb|EAP84479.1| radical SAM domain protein [Sulfitobacter sp. EE-36]
          Length = 236

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 87/241 (36%), Gaps = 51/241 (21%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    I E+F  T+QGEG   G   VF R  GC+            +C +CD+       
Sbjct: 1   MSQLRIAEVFGPTIQGEGALIGEPTVFVRTGGCDY-----------RCAWCDSMHAVDPA 49

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
            +    N+     + +E     +       L+GG P +Q   PLIQ  +  G+  A ET 
Sbjct: 50  FRHDWANMST-DAVWQEVQRLSDNTPLTVSLSGGNPAIQDFAPLIQLGHAAGYRFACETQ 108

Query: 120 GTIEPP--QGIDWICVSPKAGCDLKI---------KGGQE------LKLVFPQVNVSPEN 162
           G+I  P    +D + +SPK     +              E      +K+V    + +  +
Sbjct: 109 GSIAKPWFGQLDCLVLSPKPPSSGETVDWAAFDRCVAAGETAAQTVMKIVI--FDDADYD 166

Query: 163 YIGFDFERF-----SLQP----MDGPFLEENTNLA------ISYCFQNPKW---RLSVQT 204
           +      R+      LQP    +D     +   LA      +     + +W   RL  Q 
Sbjct: 167 WARVAATRYPQLPLYLQPGNDEVDPSVAVDPQVLAGKLLWLVDKTMAD-RWFTPRLLPQL 225

Query: 205 H 205
           H
Sbjct: 226 H 226


>gi|322392672|ref|ZP_08066132.1| ExsD protein [Streptococcus peroris ATCC 700780]
 gi|321144664|gb|EFX40065.1| ExsD protein [Streptococcus peroris ATCC 700780]
          Length = 238

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 21/159 (13%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K 
Sbjct: 9   LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120
            R   D++   +++          Y  L+GG P  L      L+  L +RG  +AVET G
Sbjct: 58  TRMTADEVIAALDKLGTYD-----YVTLSGGNPALLAANMAELVTKLKERGVTLAVETQG 112

Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
           +      + ID + +SPK          + L  +   ++
Sbjct: 113 SRWQTWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSHLD 151


>gi|270293087|ref|ZP_06199298.1| ExsD protein [Streptococcus sp. M143]
 gi|270279066|gb|EFA24912.1| ExsD protein [Streptococcus sp. M143]
          Length = 238

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 21/159 (13%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K 
Sbjct: 9   LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120
            R   D++   +++          Y  L+GG P  L      L+  L +RG  +AVET G
Sbjct: 58  TRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAQLVTKLKERGVTLAVETQG 112

Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
           +      + ID + +SPK          + L  +  Q++
Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEINFETLDFIVSQLD 151


>gi|242372943|ref|ZP_04818517.1| organic radical-activating protein [Staphylococcus epidermidis
           M23864:W1]
 gi|242349427|gb|EES41028.1| organic radical-activating protein [Staphylococcus epidermidis
           M23864:W1]
          Length = 237

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 82/207 (39%), Gaps = 34/207 (16%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + E+F  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEVFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +      +    ++ EE    G     +  ++GG P L++    L+    ++    A+ET
Sbjct: 49  SAKEDIRLLSAEEIYEELREVGGDNFNHVTISGGNPALIKGIQDLVDLFEEKNIYTALET 108

Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169
            G+   P    I+ + +SPK            L  V  Q       + V   N   ++F 
Sbjct: 109 QGSKFQPWMTQINDLTISPKPPSSTMKPNLDILDSVIEQCVHHTLNLKVVIFNEEDYEFA 168

Query: 170 R----------FSLQPMDGPFLEENTN 186
           +          F LQ +  P+LE++  
Sbjct: 169 KMIHHRYPSIPFYLQ-VGNPYLEDDVE 194


>gi|87311106|ref|ZP_01093230.1| hypothetical protein DSM3645_18841 [Blastopirellula marina DSM
           3645]
 gi|87286197|gb|EAQ78107.1| hypothetical protein DSM3645_18841 [Blastopirellula marina DSM
           3645]
          Length = 228

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 21/195 (10%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            I EI+ ++QGEG   G  + F R SGCNL           +C FCDT     +  +G  
Sbjct: 2   RIAEIYRSIQGEGALTGVTSTFVRASGCNL-----------RCWFCDTPHASWK-PEGED 49

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
            +V ++   I         +  + VLTGGEP+L  + +PL + ++  G  I +ET GT+ 
Sbjct: 50  LSVAEILGRI------ALLDCDHVVLTGGEPMLFAEMIPLCEGIHVAGRHITIETAGTLY 103

Query: 124 PPQGIDWICVSPKAGCD-LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
            P   D + +SPK       +      +    Q   +PE       E    Q        
Sbjct: 104 LPLTCDVMSISPKMSNSAPPLDDHPRWRRRHEQTRKAPEVIRQLIDEHAY-QFKFVIDRP 162

Query: 183 ENTNLAISYCFQNPK 197
            +    + Y    P+
Sbjct: 163 ADAEEVLRYLDLYPQ 177


>gi|301052981|ref|YP_003791192.1| radical SAM domain-containing protein [Bacillus anthracis CI]
 gi|300375150|gb|ADK04054.1| radical SAM domain protein [Bacillus cereus biovar anthracis str.
           CI]
          Length = 238

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 21/179 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +   +       D+  E    G +   +  ++GG P LL+    L+  L + G   A+ET
Sbjct: 49  SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPVLLKNIGFLLSILKENGMRTAIET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170
            G+   +    ID I +SPK          Q+L  V  ++     +     +  +DFE 
Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEY 167


>gi|291483909|dbj|BAI84984.1| hypothetical protein BSNT_02308 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 243

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 16/165 (9%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G+  
Sbjct: 5   IPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAK 52

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121
                    ++  E    G     +  ++GG P LL+     I+ L +     A+ET GT
Sbjct: 53  KDIRWMTAEEIFAELKDIGGDAFSHVTISGGNPALLKQLDVFIELLKENNIRAALETQGT 112

Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYI 164
           +  +    ID + +SPK      +   Q+L  +   +  +   + 
Sbjct: 113 VYQDWFTLIDDLTISPKPPSSKMVTNFQKLDHILTSLQENDRQHA 157


>gi|315613640|ref|ZP_07888547.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           sanguinis ATCC 49296]
 gi|315314331|gb|EFU62376.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
           sanguinis ATCC 49296]
          Length = 238

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 21/159 (13%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T QGEG   G+  +F R +GC+             C +CD+ F      K 
Sbjct: 9   LPVLEIFGPTFQGEGRAIGQKTMFVRTAGCDY-----------HCDWCDSAFTWDGSEKP 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120
            R   D++   +++          Y  L+GG P  L      L+  L +RG  +AVET G
Sbjct: 58  TRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAQLVTKLKERGVTLAVETQG 112

Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
           +      + ID + +SPK          + L  +  Q++
Sbjct: 113 SRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLD 151


>gi|126459256|ref|YP_001055534.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126248977|gb|ABO08068.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548]
          Length = 216

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 39/204 (19%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + EIF +LQGEG + G+ AVF R +GC             +C +CDT++       G  
Sbjct: 2   RVLEIFASLQGEGVNLGKPAVFVRLAGCP-----------IRCVYCDTEYSW-DFNGGVE 49

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQALNKRGFEIAVETNGT 121
            +  +     EE  + G     + V+TGGEPL+ +      L+  L + G  + VET+G 
Sbjct: 50  MSPGEAVRRAEELGVRG-----HVVVTGGEPLVWMRRGLEELVCGLRRLG-AVEVETSGV 103

Query: 122 IEPPQGI----DWICVSP-------KAGCDLKIKGGQELKLVFPQVNVSPENYI------ 164
             P   +    D+  VSP       KA          ++   F   +V+           
Sbjct: 104 YAPTPELDACADFYDVSPKLSNAGVKAPLSPFYPKSPKVWFKFVVADVADVEEALAYVRE 163

Query: 165 -GFDFERFSLQPMDGPFLEENTNL 187
            G   +R  L PM     E    L
Sbjct: 164 RGIPLDRVMLMPMSKTPEEHAEVL 187


>gi|73663319|ref|YP_302100.1| putative radical activating enzyme [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72495834|dbj|BAE19155.1| putative radical activating enzyme [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 238

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 37/211 (17%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSSFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +      +    ++ ++ +        +  ++GG P L++    L+   + +G + A+ET
Sbjct: 49  SAKEDIRMMSAEEIYDQLYHIAGDSFNHVTISGGNPALIKGIQQLVDLFDDKGIQSALET 108

Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169
            G+   P    ID + +SPK            L  V  Q       + V   +   + F 
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSKMKPNLPILDEVIEQCVPESLNLKVVIFDDEDYQFA 168

Query: 170 R----------FSLQ----PMDGPFLEENTN 186
           +          F LQ     +DG  +E +T 
Sbjct: 169 KMIHHRYPTVPFYLQVGNPYLDGEHVEAHTE 199


>gi|256059945|ref|ZP_05450130.1| Radical SAM domain protein [Brucella neotomae 5K33]
 gi|261323917|ref|ZP_05963114.1| radical SAM domain-containing protein [Brucella neotomae 5K33]
 gi|261299897|gb|EEY03394.1| radical SAM domain-containing protein [Brucella neotomae 5K33]
          Length = 251

 Score =  130 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++    
Sbjct: 15  IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++
Sbjct: 63  HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSV 122

Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
             +    +D + +SPK            L          P   + F
Sbjct: 123 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPHTVLKF 168


>gi|23100258|ref|NP_693725.1| coenzyme PQQ synthesis [Oceanobacillus iheyensis HTE831]
 gi|22778490|dbj|BAC14759.1| coenzyme PQQ synthesis [Oceanobacillus iheyensis HTE831]
          Length = 240

 Score =  130 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 98/248 (39%), Gaps = 55/248 (22%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           MK   + EIF  T+QGEG   GR  +F R +GC+             C +CD+ F    G
Sbjct: 1   MK-IPVLEIFGPTIQGEGMVIGRKTMFVRTAGCDY-----------SCSWCDSKFTW-DG 47

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           ++     + +  ++ +     G     +  ++GG P LL+    L+  L++   E+A+ET
Sbjct: 48  SEKDSIQLLEPEEVFDSLKDIGGNTFGHVTISGGNPALLKQIDGLVDLLHQHQIEVALET 107

Query: 119 NGTI--EPPQGIDWICVSPKAGC----------DLKIKGGQE-------LKLV-FPQVNV 158
            G+   +    +D + +SPK             D  I+   +       LK+V F Q ++
Sbjct: 108 QGSRWQDWFTKVDDLTLSPKPPSSGMKTNFTTLDNIIERLDKEQDGHFSLKVVIFDQEDL 167

Query: 159 --SPENYIGFDFERFSLQPMDGPFLEENTNL-------------AISYCFQN---PKWRL 200
             + + ++ + F    LQ   G    E +                I    +N      R+
Sbjct: 168 TYAEQIHVRYPFVTLFLQV--GNDNIEASEDDRLLSDLLDKYEKLIDLVMENKVLKDVRV 225

Query: 201 SVQTHKFI 208
             Q H ++
Sbjct: 226 LPQLHTYL 233


>gi|319652978|ref|ZP_08007083.1| radical SAM domain-containing protein [Bacillus sp. 2_A_57_CT2]
 gi|317395327|gb|EFV76060.1| radical SAM domain-containing protein [Bacillus sp. 2_A_57_CT2]
          Length = 243

 Score =  130 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 16/167 (9%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSSFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +        +  ++ +E    G     +  ++GG P LL+    LI  L     +I +ET
Sbjct: 49  SAKDSIRQMEPDEIWKELKELGGDGFSFVTISGGNPALLKNLSELISLLKAEKIKICLET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY 163
            G+   +    ID + +SPK            L  +   +    +  
Sbjct: 109 QGSRWQDWFYEIDELTLSPKPPSSGMKTDFDVLGYIVNNLQTKRKAE 155


>gi|294851212|ref|ZP_06791885.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Brucella sp.
           NVSL 07-0026]
 gi|294819801|gb|EFG36800.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Brucella sp.
           NVSL 07-0026]
          Length = 280

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++    
Sbjct: 44  IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 91

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++
Sbjct: 92  HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSV 151

Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
             +    +D + +SPK            L          P   + F
Sbjct: 152 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 197


>gi|297621468|ref|YP_003709605.1| Radical activating enzyme [Waddlia chondrophila WSU 86-1044]
 gi|297376769|gb|ADI38599.1| Radical activating enzyme [Waddlia chondrophila WSU 86-1044]
          Length = 228

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 85/229 (37%), Gaps = 47/229 (20%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +   + EIFL++QGE    G    F R + CNL           +C +CDT +   +G  
Sbjct: 15  QTLRLIEIFLSIQGETSLTGLPTTFIRLASCNL-----------RCTWCDTPYSFGKGES 63

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
               ++  + + +            +  +TGGEPLLQ  V  L++ L    + +++ET G
Sbjct: 64  S---SLQSIIETVRS------NGASHVCITGGEPLLQSQVYLLMETLCNLDYIVSLETGG 114

Query: 121 TIE-------PPQGIDWICVSPKAGCDLK--------IKGGQELKLVFPQ-------VNV 158
           ++            +D  C  P +G   K        ++   E+K V          V +
Sbjct: 115 SLSTEKVDPRVITILDIKC--PGSGMSQKNTWENLERLREQDEVKFVIMNREDYEWSVKI 172

Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
                +    +     P+      +   L           R+++Q HK+
Sbjct: 173 CKNRDLFSRSKPPLFSPVHNVLNPQ--ELIQWTLQDTLPVRINLQVHKW 219


>gi|299541811|ref|ZP_07052134.1| coenzyme PQQ synthesis-like protein [Lysinibacillus fusiformis ZC1]
 gi|298725549|gb|EFI66190.1| coenzyme PQQ synthesis-like protein [Lysinibacillus fusiformis ZC1]
          Length = 242

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 16/167 (9%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKVPVIEIFGPTIQGEGMVVGQKTMFVRTAGCDY-----------SCSWCDSSFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118
           +           ++  E    G     +  ++GG P L  ++  LI  L +   +I VET
Sbjct: 49  SGKHLIVQMTAEEIWSELKRLGGNGFSFVTISGGNPALNPNLAELIAILKENDIKIGVET 108

Query: 119 NGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY 163
            G+        ID + +SPK            L  +F ++     N+
Sbjct: 109 QGSRWQKWMYEIDELTISPKPPSSGMTTDYSVLSYIFEKLKDRNSNH 155


>gi|110596862|ref|ZP_01385152.1| Radical SAM [Chlorobium ferrooxidans DSM 13031]
 gi|110341549|gb|EAT60009.1| Radical SAM [Chlorobium ferrooxidans DSM 13031]
          Length = 224

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 89/236 (37%), Gaps = 52/236 (22%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
              +I EIF ++QGE  +AG    F R +GC              CR CDT +       
Sbjct: 4   PTLNISEIFHSIQGESSYAGWPCTFIRLAGC-----------GHGCRHCDTAYAEH---P 49

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFE-IAVETN 119
           G   N++++ + + E             +TGGEPLLQ +V PL++ L  R  E + +ET 
Sbjct: 50  GREMNIEEIIERVVELG------APLVEITGGEPLLQEEVYPLMEKLCNRWKERVLLETG 103

Query: 120 GTIEPPQG-------IDWIC----VSPK---AGCDLKIKGGQ------ELKLVFPQVNVS 159
           G +   +        ID       VS K       L +K         ELK+V    +  
Sbjct: 104 GFLSVAKADPRVHKIIDLKPPSTGVSDKNNPENIALALKQKDHANRLIELKIVV--ADRE 161

Query: 160 PENYIGFDFERFSLQPMDGPFLE-------ENTNLAISYCFQNPKWRLSVQTHKFI 208
              +      R  L P     +        E  NLA          R+ +Q HK+I
Sbjct: 162 DYLWARELLTRTGL-PDACTVMMGVAFGMLEPVNLANWILEDRLNVRMQLQLHKYI 216


>gi|239636677|ref|ZP_04677679.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           warneri L37603]
 gi|239598032|gb|EEQ80527.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           warneri L37603]
          Length = 237

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 33/195 (16%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + E+F  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEVFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +      +    ++  +    G     +  ++GG P L++    L+    +   + A+ET
Sbjct: 49  SAKEDIQLMSAEEIYNKLREIGGDNFNHVTISGGNPALIKGIQDLVDLFEEHHIQTALET 108

Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169
            G+   P    ID + +SPK            L  V  Q       + V   +   F+F 
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSNMKPNLDILDSVIEQCVPESLNLKVVIFDEDDFEFA 168

Query: 170 R----------FSLQ 174
           +          F LQ
Sbjct: 169 KMIHHRYPTIPFYLQ 183


>gi|330684947|gb|EGG96626.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus epidermidis VCU121]
          Length = 237

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 80/204 (39%), Gaps = 34/204 (16%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + E+F  T+QGEG   GR  +F R +GC+            +C +CD+ F    G
Sbjct: 1   MAKIPVLEVFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +      +    ++  +    G     +  ++GG P L++    L+    +   + A+ET
Sbjct: 49  SAKEDIQLMSAEEIYNKLREVGGDNFNHVTISGGNPALIKGIQDLVDLFEEHHIQTALET 108

Query: 119 NGTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169
            G+   P    ID + +SPK            L  V  Q       + V   +   F+F 
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSNMKPNLDILDSVIEQCVPESLNLKVVIFDEDDFEFA 168

Query: 170 R----------FSLQPMDGPFLEE 183
           +          F LQ +  P+L+E
Sbjct: 169 KMIHHRYPSIPFYLQ-VGNPYLDE 191


>gi|163939249|ref|YP_001644133.1| radical SAM domain-containing protein [Bacillus weihenstephanensis
           KBAB4]
 gi|163861446|gb|ABY42505.1| Radical SAM domain protein [Bacillus weihenstephanensis KBAB4]
          Length = 238

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 16/160 (10%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G
Sbjct: 1   MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DG 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
           +   +       D+  E    G +   +  ++GG P LL+    L+  L + G   AVET
Sbjct: 49  SAKDQIKQMTPEDIWNELVEIGGENFSHVTISGGNPVLLKNMQFLLSILKENGMRTAVET 108

Query: 119 NGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156
            G+   +    ID + +SPK            L  V  ++
Sbjct: 109 QGSKWQDWLLQIDEVTISPKPPSSTMKTDFHMLDSVIHKL 148


>gi|52079923|ref|YP_078714.1| QueE [Bacillus licheniformis ATCC 14580]
 gi|52785294|ref|YP_091123.1| YkvL [Bacillus licheniformis ATCC 14580]
 gi|319646260|ref|ZP_08000490.1| YkvL protein [Bacillus sp. BT1B_CT2]
 gi|52003134|gb|AAU23076.1| QueE [Bacillus licheniformis ATCC 14580]
 gi|52347796|gb|AAU40430.1| YkvL [Bacillus licheniformis ATCC 14580]
 gi|317392010|gb|EFV72807.1| YkvL protein [Bacillus sp. BT1B_CT2]
          Length = 243

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 84/246 (34%), Gaps = 51/246 (20%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           K   + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G+
Sbjct: 3   KPIPVLEIFGPTVQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGS 50

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
                      ++ E     G     +  ++GG P LL+    LI  L + G   A+ET 
Sbjct: 51  AKKDIKWMTAEEVYESLKDIGGNAFSHVTISGGNPALLKQLDGLISLLKENGIRTALETQ 110

Query: 120 GTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-------------VSPENYI 164
           GT   +   GID + +SPK            L  +  ++              +   + +
Sbjct: 111 GTFYQDWFTGIDDLTISPKPPSSNMKTDFNRLDHIVDRLKEHGRAAAASLKVVIFTADDL 170

Query: 165 GFDFER--------FSLQPMDGPFLEENTNLAISYCFQN--------------PKWRLSV 202
            F  +         F LQ  +     E+    +    Q                + R+  
Sbjct: 171 QFAKQVHQRYPDIPFFLQVGNDDVHTEDQERLVERLLQKYEQLVEAVTRDPELNRVRVLP 230

Query: 203 QTHKFI 208
           Q H  I
Sbjct: 231 QLHTLI 236


>gi|56698570|ref|YP_168947.1| radical SAM domain-containing protein [Ruegeria pomeroyi DSS-3]
 gi|56680307|gb|AAV96973.1| radical SAM domain protein [Ruegeria pomeroyi DSS-3]
          Length = 239

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 75/221 (33%), Gaps = 35/221 (15%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    I EIF  T+QGEG   G   VF R  GC+            +C +CD+    +  
Sbjct: 1   MTTLRIAEIFGPTIQGEGAVIGAPTVFVRAGGCDY-----------RCSWCDSLHA-VDS 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
                +       +  E             L+GG P +Q   PLI+    +G+  A+ET 
Sbjct: 49  AYRDTWTAMTTEQVWAEVARLSGGVPLTVSLSGGNPAIQDFGPLIEMGKAQGYRFALETQ 108

Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELK---------------LVFPQVNVSPEN 162
           G++     + +  + +SPK     +                       +VF + +     
Sbjct: 109 GSVARGWFRELSPLILSPKPPSSGETVDWDRFADCIARARDAVTVIKIVVFDEADYLWAR 168

Query: 163 YIGFDFER--FSLQPMD-GPFLEENTNLAISY--CFQNPKW 198
            +   F      LQP +  P   +  + AI         +W
Sbjct: 169 EVAARFPNLPIYLQPGNHTPPPPDAEDAAIDMDGIMARYEW 209


>gi|311067888|ref|YP_003972811.1| queuosine biosynthesis enzyme [Bacillus atrophaeus 1942]
 gi|310868405|gb|ADP31880.1| queuosine biosynthesis enzyme [Bacillus atrophaeus 1942]
          Length = 243

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 16/154 (10%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G+  
Sbjct: 5   IPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSAK 52

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121
                    D+  E    G     +  ++GG P LL+     I  L ++    A+ET GT
Sbjct: 53  KDIRWMTAEDIYSELKEIGGDAFSHVTISGGNPALLKQLDSFITLLKEQNIRTALETQGT 112

Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
           +  E    ID + +SPK          ++L  + 
Sbjct: 113 VYQEWFTLIDDLTISPKPPSSGMTTDFKKLDHIL 146


>gi|15891589|ref|NP_357261.1| radical activating protein [Agrobacterium tumefaciens str. C58]
 gi|15160025|gb|AAK90046.1| radical activating protein [Agrobacterium tumefaciens str. C58]
          Length = 251

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 55/142 (38%), Gaps = 15/142 (10%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
               I EIF  T+QGEG   G   VF R  GC+            +C +CDT    +   
Sbjct: 13  TTVRISEIFGPTIQGEGPLIGLPTVFVRTGGCDY-----------RCSWCDTLHA-VDSE 60

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
               +    +  + +E             L+GG P +Q    LI      G+  A+ET G
Sbjct: 61  YRDTWKPMSVEAIWQEVLGLSGGMPLTVSLSGGNPAIQPLGTLIAKGQGEGYRFALETQG 120

Query: 121 TI--EPPQGIDWICVSPKAGCD 140
           +I  +    +D + +SPK    
Sbjct: 121 SIAKDWFADLDHLVLSPKPPSS 142


>gi|310640608|ref|YP_003945366.1| coenzyme pqq synthesis-like protein [Paenibacillus polymyxa SC2]
 gi|309245558|gb|ADO55125.1| Coenzyme PQQ synthesis-like protein [Paenibacillus polymyxa SC2]
          Length = 265

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 83/241 (34%), Gaps = 51/241 (21%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + E+F  T+QGEG   GR  +F R +GC+             C +CD+ F    G+  
Sbjct: 27  IPVLEVFGPTVQGEGMVIGRKTMFVRTAGCDY-----------HCSWCDSAFTW-DGSAK 74

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121
            +       D+ +E    G +   +  L+GG P LL     LI  L  +G   AVET G+
Sbjct: 75  DQIRRLSATDIWQELKSIGGERFSHVTLSGGNPALLPQLGALITLLRSQGIATAVETQGS 134

Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELK-------------------LVFPQVNVSP 160
              E    ID + +SPK          + L                    ++F   +++ 
Sbjct: 135 RWQEWLYDIDEVTLSPKPPSSGMTTNWEVLDDIVTRLSNQRMAGACSLKVVIFNDTDLAY 194

Query: 161 ENYIGFDFERF--SLQPMDGPFLEENTNLAISYCFQNPKW--------------RLSVQT 204
              I   +      LQ  +     ENT           +W              R+  Q 
Sbjct: 195 ARTIHERYPHIPLFLQTGNPDVNTENTGQIAESLLHRYEWLIDRVMDDSRLNDVRVLPQL 254

Query: 205 H 205
           H
Sbjct: 255 H 255


>gi|116253993|ref|YP_769831.1| hypothetical protein RL4256 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258641|emb|CAK09745.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 247

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 73/194 (37%), Gaps = 33/194 (17%)

Query: 3   LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
              + EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++   
Sbjct: 5   TIRVSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDSLHA-VESAF 52

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
             ++       +  +       +     L+GG P +Q   PLI+  + +G+  A+ET G+
Sbjct: 53  RDQWIPMSTEAVWHKVTELSGGKPLTVSLSGGNPAIQPLRPLIELGHSQGYRFALETQGS 112

Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELK----------------LVFPQVNVSPENY 163
           +     + +D + +SPK      +    ++                 +VF   +      
Sbjct: 113 VAQAWFRDLDTLVISPKPPSSGMLTDWDQVDNCLQLAAGGPEVALKIVVFDDADYEFAQR 172

Query: 164 IGFDFERF--SLQP 175
            G  + +    LQP
Sbjct: 173 AGQRYPQIPLFLQP 186


>gi|319957590|ref|YP_004168853.1| radical sam domain protein [Nitratifractor salsuginis DSM 16511]
 gi|319419994|gb|ADV47104.1| Radical SAM domain protein [Nitratifractor salsuginis DSM 16511]
          Length = 253

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 83/186 (44%), Gaps = 19/186 (10%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQG 59
           ++ + E FL++QGEG +AG  + F R  GCNL     G E D    +   CDT F   + 
Sbjct: 1   MFWLTEKFLSIQGEGRYAGVPSYFLRTGGCNLHCPGFGAEYDVEGEKRYGCDTWFSVDRA 60

Query: 60  TKGGRYNVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFE 113
                  V+  A L+EE            + V+TGGEPL+    P    +++ L +RG +
Sbjct: 61  FAARWQAVESAAPLLEEMDRAFLEIGYLPHVVITGGEPLIYAADPAFYEVVEGLVERGVQ 120

Query: 114 IAVETNGTIEPP------QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD 167
           I  ETNGT+ P              +S K        G  + + + P+V  +  +  G  
Sbjct: 121 ITFETNGTVAPDFLRYGAYKACTFALSVKLSNS----GEPKERRIHPEVLRTIASEAGEA 176

Query: 168 FERFSL 173
           F +F+L
Sbjct: 177 FLKFTL 182


>gi|256112302|ref|ZP_05453223.1| Radical SAM domain protein [Brucella melitensis bv. 3 str. Ether]
 gi|265993735|ref|ZP_06106292.1| radical SAM domain-containing protein [Brucella melitensis bv. 3
           str. Ether]
 gi|262764716|gb|EEZ10637.1| radical SAM domain-containing protein [Brucella melitensis bv. 3
           str. Ether]
          Length = 251

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++    
Sbjct: 15  IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++
Sbjct: 63  HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSV 122

Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
             +    +D + +SPK            L          P   + F
Sbjct: 123 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 168


>gi|225628173|ref|ZP_03786208.1| Radical SAM domain protein [Brucella ceti str. Cudo]
 gi|237816336|ref|ZP_04595329.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Brucella abortus str. 2308 A]
 gi|225616998|gb|EEH14045.1| Radical SAM domain protein [Brucella ceti str. Cudo]
 gi|237788403|gb|EEP62618.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Brucella abortus str. 2308 A]
 gi|326539690|gb|ADZ87905.1| radical SAM domain protein [Brucella melitensis M5-90]
          Length = 252

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++    
Sbjct: 16  IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 63

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++
Sbjct: 64  HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSV 123

Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
             +    +D + +SPK            L          P   + F
Sbjct: 124 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 169


>gi|306843411|ref|ZP_07476012.1| Radical SAM domain protein [Brucella sp. BO1]
 gi|306276102|gb|EFM57802.1| Radical SAM domain protein [Brucella sp. BO1]
          Length = 247

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++    
Sbjct: 11  IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 58

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++
Sbjct: 59  HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSV 118

Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
             +    +D + +SPK            L          P   + F
Sbjct: 119 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 164


>gi|23502822|ref|NP_698949.1| radical activating enzyme [Brucella suis 1330]
 gi|62290822|ref|YP_222615.1| radical activating protein [Brucella abortus bv. 1 str. 9-941]
 gi|82700734|ref|YP_415308.1| proline-rich extensin:radical SAM family protein [Brucella
           melitensis biovar Abortus 2308]
 gi|161619892|ref|YP_001593779.1| radical SAM domain-containing protein [Brucella canis ATCC 23365]
 gi|163843996|ref|YP_001628400.1| radical SAM domain-containing protein [Brucella suis ATCC 23445]
 gi|225853410|ref|YP_002733643.1| radical SAM domain-containing protein [Brucella melitensis ATCC
           23457]
 gi|254694602|ref|ZP_05156430.1| Radical SAM domain protein [Brucella abortus bv. 3 str. Tulya]
 gi|254696227|ref|ZP_05158055.1| Radical SAM domain protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254704982|ref|ZP_05166810.1| Radical SAM domain protein [Brucella suis bv. 3 str. 686]
 gi|254731145|ref|ZP_05189723.1| Radical SAM domain protein [Brucella abortus bv. 4 str. 292]
 gi|256045575|ref|ZP_05448455.1| Radical SAM domain protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256158470|ref|ZP_05456368.1| Radical SAM domain protein [Brucella ceti M490/95/1]
 gi|256253889|ref|ZP_05459425.1| Radical SAM domain protein [Brucella ceti B1/94]
 gi|256263110|ref|ZP_05465642.1| radical SAM domain-containing protein [Brucella melitensis bv. 2
           str. 63/9]
 gi|256370376|ref|YP_003107887.1| queuosine biosynthesis protein QueE [Brucella microti CCM 4915]
 gi|260169391|ref|ZP_05756202.1| queuosine biosynthesis protein QueE [Brucella sp. F5/99]
 gi|260546089|ref|ZP_05821829.1| radical SAM domain-containing protein [Brucella abortus NCTC 8038]
 gi|260562886|ref|ZP_05833372.1| radical SAM domain-containing protein [Brucella melitensis bv. 1
           str. 16M]
 gi|260567544|ref|ZP_05838014.1| radical SAM domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|260758876|ref|ZP_05871224.1| radical SAM domain-containing protein [Brucella abortus bv. 4 str.
           292]
 gi|260760600|ref|ZP_05872943.1| radical SAM domain-containing protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|261214926|ref|ZP_05929207.1| radical SAM domain-containing protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|261221026|ref|ZP_05935307.1| radical SAM domain-containing protein [Brucella ceti B1/94]
 gi|261755683|ref|ZP_05999392.1| radical SAM domain-containing protein [Brucella suis bv. 3 str.
           686]
 gi|261758913|ref|ZP_06002622.1| radical SAM domain-containing protein [Brucella sp. F5/99]
 gi|265991999|ref|ZP_06104556.1| radical SAM domain-containing protein [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265996986|ref|ZP_06109543.1| radical SAM domain-containing protein [Brucella ceti M490/95/1]
 gi|23348846|gb|AAN30864.1| radical activating enzyme, putative [Brucella suis 1330]
 gi|62196954|gb|AAX75254.1| hypothetical radical activating enzyme [Brucella abortus bv. 1 str.
           9-941]
 gi|82616835|emb|CAJ11931.1| Proline-rich extensin:Radical SAM [Brucella melitensis biovar
           Abortus 2308]
 gi|161336703|gb|ABX63008.1| Radical SAM domain protein [Brucella canis ATCC 23365]
 gi|163674719|gb|ABY38830.1| Radical SAM domain protein [Brucella suis ATCC 23445]
 gi|225641775|gb|ACO01689.1| Radical SAM domain protein [Brucella melitensis ATCC 23457]
 gi|256000539|gb|ACU48938.1| queuosine biosynthesis protein QueE [Brucella microti CCM 4915]
 gi|260096196|gb|EEW80072.1| radical SAM domain-containing protein [Brucella abortus NCTC 8038]
 gi|260152902|gb|EEW87994.1| radical SAM domain-containing protein [Brucella melitensis bv. 1
           str. 16M]
 gi|260157062|gb|EEW92142.1| radical SAM domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|260669194|gb|EEX56134.1| radical SAM domain-containing protein [Brucella abortus bv. 4 str.
           292]
 gi|260671032|gb|EEX57853.1| radical SAM domain-containing protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260916533|gb|EEX83394.1| radical SAM domain-containing protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|260919610|gb|EEX86263.1| radical SAM domain-containing protein [Brucella ceti B1/94]
 gi|261738897|gb|EEY26893.1| radical SAM domain-containing protein [Brucella sp. F5/99]
 gi|261745436|gb|EEY33362.1| radical SAM domain-containing protein [Brucella suis bv. 3 str.
           686]
 gi|262551454|gb|EEZ07444.1| radical SAM domain-containing protein [Brucella ceti M490/95/1]
 gi|263003065|gb|EEZ15358.1| radical SAM domain-containing protein [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263093011|gb|EEZ17161.1| radical SAM domain-containing protein [Brucella melitensis bv. 2
           str. 63/9]
 gi|326409973|gb|ADZ67038.1| radical SAM domain-containing protein [Brucella melitensis M28]
          Length = 251

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++    
Sbjct: 15  IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++
Sbjct: 63  HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSV 122

Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
             +    +D + +SPK            L          P   + F
Sbjct: 123 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 168


>gi|303229411|ref|ZP_07316201.1| radical SAM domain family protein [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303230757|ref|ZP_07317504.1| radical SAM domain family protein [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514517|gb|EFL56512.1| radical SAM domain family protein [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302515947|gb|EFL57899.1| radical SAM domain family protein [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 220

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 89/227 (39%), Gaps = 43/227 (18%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           ++ E+F ++ GEG   G +  F R   CN            +C +CDT +     +    
Sbjct: 6   NVIELFSSIDGEGKRQGFLTTFLRLHDCN-----------IRCSYCDTLYSYGPESTFES 54

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRG--FEIAVETNG 120
            +V  +AD+IE+       E     +TGGEPLLQ    + LI  L +R   ++  +ETNG
Sbjct: 55  MSVQAVADVIEQL------ENHRITVTGGEPLLQEPAIIELIDELTRRNARYDFNIETNG 108

Query: 121 TIEPPQGID--WICVSPKAGCDLKIKG-----------GQELKLVF---PQVNVSPENYI 164
           TI P    D  W     K    L                  +K V      ++   E   
Sbjct: 109 TIIPSFHRDNVWFTYDYKTPSSLAEDAMNLDIFKVATPADIIKFVVGSMQDLDRMNEILK 168

Query: 165 GFDFE-RFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
            +  E +  + P+ G  +E  T   + Y   +     R  +Q HKFI
Sbjct: 169 TYTTEAQIFVSPVWG-NIEGAT--IVDYMKAHDWQNVRFQLQIHKFI 212


>gi|254718024|ref|ZP_05179835.1| Radical SAM domain protein [Brucella sp. 83/13]
 gi|265982972|ref|ZP_06095707.1| radical SAM domain-containing protein [Brucella sp. 83/13]
 gi|306839805|ref|ZP_07472606.1| Radical SAM domain protein [Brucella sp. NF 2653]
 gi|264661564|gb|EEZ31825.1| radical SAM domain-containing protein [Brucella sp. 83/13]
 gi|306405160|gb|EFM61438.1| Radical SAM domain protein [Brucella sp. NF 2653]
          Length = 247

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++    
Sbjct: 11  IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 58

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++
Sbjct: 59  HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIEHGKAEGYRFALETQGSV 118

Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
             +    +D + +SPK            L          P   + F
Sbjct: 119 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 164


>gi|149203608|ref|ZP_01880577.1| radical activating protein [Roseovarius sp. TM1035]
 gi|149142725|gb|EDM30767.1| radical activating protein [Roseovarius sp. TM1035]
          Length = 240

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 75/192 (39%), Gaps = 32/192 (16%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G+  VF R  GC+            +C +CD+    ++    
Sbjct: 5   IRVSEIFGPTIQGEGALIGQPTVFVRTGGCDY-----------RCVWCDSLHA-VESAYR 52

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +       ++ E             L+GG P +Q    LI   + RG+  A+ET G++
Sbjct: 53  ETWVPMSPEVVLAEVARLSGGRPIMVTLSGGNPAIQPLGALIDLGHARGYRFAMETQGSV 112

Query: 123 --EPPQGIDWICVSPKA---GCDLKIKGGQE-----------LKL-VFPQVNVSPENYIG 165
             +    +D + +SPK    G ++      +           LK+ VF + +      + 
Sbjct: 113 ARDWFAALDMLVLSPKPPSSGMEVDWALFDDCVAAAKGAASVLKIVVFDEADYEWARAVA 172

Query: 166 FDFER--FSLQP 175
             + +    LQP
Sbjct: 173 GRYPQLPLYLQP 184


>gi|149916377|ref|ZP_01904897.1| radical activating protein [Roseobacter sp. AzwK-3b]
 gi|149809831|gb|EDM69683.1| radical activating protein [Roseobacter sp. AzwK-3b]
          Length = 242

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 86/244 (35%), Gaps = 60/244 (24%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G   VF R  GC+            +C +CD+    +     
Sbjct: 7   IRVSEIFGPTIQGEGALIGVPTVFVRTGGCDY-----------RCSWCDSLHA-VDSAFR 54

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +       ++ E             L+GG P +Q    +I+  + RG+  A+ET G++
Sbjct: 55  ETWAPMTPDAIMAEIEKLSGGRPLLVSLSGGNPAIQPLGEVIRLGHTRGYGFALETQGSV 114

Query: 123 --EPPQGIDWICVSPKA--------------------GCDLKIKGGQELKLVFPQVNVSP 160
             +    +D + +SPK                     G D+ +K      ++F + +   
Sbjct: 115 AKDWFSELDMLVLSPKPPSSGMEVDWAAFDACIAAGQGADMVMKI-----VIFDETDYDW 169

Query: 161 ENYIGFDFER--FSLQP--------------MDGPFLEENTNLAISYCFQNPKW---RLS 201
              +   + +    LQP              +D   L+      + +  Q+  W   R+ 
Sbjct: 170 ARKVAGRYPQLPLFLQPGNHTPPPPGDDAARVDQDGLDARMRWLVDHVTQD-GWFEARVL 228

Query: 202 VQTH 205
            Q H
Sbjct: 229 PQLH 232


>gi|254700612|ref|ZP_05162440.1| Radical SAM domain protein [Brucella suis bv. 5 str. 513]
 gi|261751121|ref|ZP_05994830.1| radical SAM domain-containing protein [Brucella suis bv. 5 str.
           513]
 gi|261740874|gb|EEY28800.1| radical SAM domain-containing protein [Brucella suis bv. 5 str.
           513]
          Length = 251

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++    
Sbjct: 15  IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++
Sbjct: 63  HEWKPMSVEAIWHEVTTLSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSV 122

Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
             +    +D + +SPK            L          P   + F
Sbjct: 123 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 168


>gi|254489194|ref|ZP_05102398.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Roseobacter sp. GAI101]
 gi|214042202|gb|EEB82841.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Roseobacter sp. GAI101]
          Length = 245

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 55/143 (38%), Gaps = 15/143 (10%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    I EIF  T+QGEG   G   VF R  GC+            +C +CD+    +  
Sbjct: 7   MTQLRIAEIFGPTIQGEGALIGEPTVFVRTGGCDY-----------RCSWCDSLHA-VDS 54

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
                +       +  +     +       L+GG P +Q    LI     +G+  A ET 
Sbjct: 55  AFRHTWAPMTTEAVWADVVRLSKGRPLTVSLSGGNPAIQDFTALIARGQAQGYRFACETQ 114

Query: 120 GTIEPP--QGIDWICVSPKAGCD 140
           G+I  P    +D + +SPK    
Sbjct: 115 GSIAKPWFADLDTLVLSPKPPSS 137


>gi|254713614|ref|ZP_05175425.1| Radical SAM domain protein [Brucella ceti M644/93/1]
 gi|254716032|ref|ZP_05177843.1| Radical SAM domain protein [Brucella ceti M13/05/1]
 gi|261217800|ref|ZP_05932081.1| radical SAM domain-containing protein [Brucella ceti M13/05/1]
 gi|261321352|ref|ZP_05960549.1| radical SAM domain-containing protein [Brucella ceti M644/93/1]
 gi|260922889|gb|EEX89457.1| radical SAM domain-containing protein [Brucella ceti M13/05/1]
 gi|261294042|gb|EEX97538.1| radical SAM domain-containing protein [Brucella ceti M644/93/1]
          Length = 243

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++    
Sbjct: 7   IRISEIFSPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 54

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++
Sbjct: 55  HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSV 114

Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
             +    +D + +SPK            L          P   + F
Sbjct: 115 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 160


>gi|260463745|ref|ZP_05811943.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Mesorhizobium opportunistum WSM2075]
 gi|319785229|ref|YP_004144705.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|259030599|gb|EEW31877.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Mesorhizobium opportunistum WSM2075]
 gi|317171117|gb|ADV14655.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 244

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 82/241 (34%), Gaps = 53/241 (21%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G   VF R  GC+            +C +CD+    +     
Sbjct: 8   IRVSEIFGPTIQGEGVLIGLPTVFIRTGGCDY-----------RCSWCDSLHA-VDNQFR 55

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             + +  +  + +              L+GG P +Q    LI+  +  G+  A+ET  ++
Sbjct: 56  HEWKMMPVDAVWQSVVALSGARPVMVSLSGGNPAIQPFGGLIERGHAEGYRFALETQASV 115

Query: 123 --EPPQGIDWICVSPKAGCDLK----------IKGGQE-----LKLVFPQVNVSPENYIG 165
             +    +D + +SPK                I+  +E     LKLV    + S   +  
Sbjct: 116 AKDWFAELDVLVLSPKPPSSEMRTDWVAFEACIEAAREKPQVVLKLVI--FDESDYAFAK 173

Query: 166 FDFERF-----SLQPMDGPFLEENTN-LAISY--CFQNPKW-------------RLSVQT 204
               RF      LQP +           A+      +  +W             R+  Q 
Sbjct: 174 DAAARFPSLPVYLQPGNHTPPRRGEEDAAVDLAGIMRRMEWLIEKVTQDRWFEARVLPQL 233

Query: 205 H 205
           H
Sbjct: 234 H 234


>gi|297568917|ref|YP_003690261.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296924832|gb|ADH85642.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 241

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 81/222 (36%), Gaps = 44/222 (19%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF +LQGE  HAG   +F R +GCNL           +C +CD  +   +   G   
Sbjct: 31  VAEIFYSLQGESSHAGYPCIFVRLAGCNL-----------RCVYCDARYTYEEA--GTCR 77

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE- 123
            + ++   I E             +TGGEPLLQ +V  L+ AL     ++ +ETNGTI  
Sbjct: 78  TIAEVMAAIAEL-----PPVSRVEITGGEPLLQEEVYSLLNALLADQRQVLLETNGTISL 132

Query: 124 --PPQGI----DWICVSPKAGCDL--------KIKGGQELKLV------FPQVNVSPENY 163
              P  +    D  C  P +G           ++    E+K V      +         Y
Sbjct: 133 ARVPAAVHCIMDVKC--PGSGMAEHLDRENFRRLTDRDEIKFVLSDRRDYDWARKIINEY 190

Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205
              D       P+            +         RL +Q H
Sbjct: 191 QLADHPHLIFSPVTNRLQPSELAAWLLADALPA--RLQLQLH 230


>gi|322383448|ref|ZP_08057228.1| queuosine biosynthesis enzyme-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321152249|gb|EFX45075.1| queuosine biosynthesis enzyme-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 240

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 16/141 (11%)

Query: 8   EIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
           EIF  T+QGEG   G+  +F R +GC+            +C +CD+ F    G+   +  
Sbjct: 3   EIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------RCSWCDSSFTW-DGSGKDQIR 50

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--E 123
           +    D++EE    G K   +  ++GG P LL     L+  L  +G   A+ET G+   +
Sbjct: 51  MLSPEDIVEELKRLGGKRFSHVTISGGNPVLLSQMGKLVSLLQSQGIRTAIETQGSKWQD 110

Query: 124 PPQGIDWICVSPKAGCDLKIK 144
               +D + +SPK        
Sbjct: 111 WLLAVDDVTLSPKPPSSGMTT 131


>gi|126737387|ref|ZP_01753122.1| radical activating protein [Roseobacter sp. SK209-2-6]
 gi|126721972|gb|EBA18675.1| radical activating protein [Roseobacter sp. SK209-2-6]
          Length = 235

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 85/238 (35%), Gaps = 47/238 (19%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
               I EIF  T+QGEG   G   VF R  GC+            +C +CD+    +   
Sbjct: 1   MTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDSLHA-VDSE 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
               +      ++ +E       +     ++GG P +Q   PLI+  +  G+  A ET G
Sbjct: 49  NRHDWAKMSADEVFDEVCRLSGGKPLTVSISGGNPAIQDFAPLIRLGHAAGYGFACETQG 108

Query: 121 TIEPP--QGIDWICVSPKAGC----------DLKIKGGQELKLVFPQVNVSPENYIGFDF 168
           +I  P    +D + +SPK             D  +K  +  + V  ++ +  +    +  
Sbjct: 109 SIAKPWFGDLDTLVLSPKPPSSGEDTDWSSFDACLKAAEACEQVVMKIVIFDDADYAWAK 168

Query: 169 ER--------FSLQPMDGPFLEE-------NTNL---AISYCFQNPKW---RLSVQTH 205
           E           LQP +     E        T+     I     + +W   R+  Q H
Sbjct: 169 EASARYPDLPLYLQPGNPEVDPELPVDLNQATDRLLWLIEKVTAD-QWYTPRVLPQLH 225


>gi|150377056|ref|YP_001313652.1| radical SAM domain-containing protein [Sinorhizobium medicae
           WSM419]
 gi|150031603|gb|ABR63719.1| Radical SAM domain protein [Sinorhizobium medicae WSM419]
          Length = 245

 Score =  128 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 89/239 (37%), Gaps = 49/239 (20%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++ +  
Sbjct: 9   IRVSEIFGPTIQGEGVLIGLPTVFVRSGGCDY-----------RCSWCDSLHA-VESSYR 56

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             ++      + +E       E     L+GG P +Q    LI   ++ G+  A+ET G+I
Sbjct: 57  HEWHAMSTEAVWQEIVRLSRGEAVMVSLSGGNPAIQPFGDLIGRGHRNGYRFALETQGSI 116

Query: 123 --EPPQGIDWICVSPKAGCD------------LKIKGGQE---LKL-VFPQVNVSPENYI 164
             E    +D + +SPK                L++  G+    LK  VF + + +     
Sbjct: 117 AREWFAELDVLVLSPKPPSSGMETDWQAFDVCLRMAAGKPQTVLKFVVFDEADYAYARAA 176

Query: 165 GFDFERF--SLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQTH 205
                     LQP +    P  +++  + +    +  +W             R+  Q H
Sbjct: 177 AARHPHLPVYLQPGNHTPPPSDDKDAPIDLEGVMERMRWLVDATIEDGWFEARVLPQLH 235


>gi|110636375|ref|YP_676583.1| radical SAM family protein [Mesorhizobium sp. BNC1]
 gi|110287359|gb|ABG65418.1| preQ(0) biosynthesis protein QueE [Chelativorans sp. BNC1]
          Length = 246

 Score =  128 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 80/239 (33%), Gaps = 49/239 (20%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G   VF R  GC+            +C +CD+    +     
Sbjct: 10  IRVAEIFGPTIQGEGPLIGLPTVFVRTGGCDY-----------RCAWCDSLHA-VDTQYR 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +       + E+  +          L+GG P +Q    LI      G+  A+ET G++
Sbjct: 58  HDWEPMTAKAVWEKVQVLSANTPLMVSLSGGNPAIQPLGDLIALGKSSGYRFALETQGSL 117

Query: 123 --EPPQGIDWICVSPKAGCDLK----------IKGGQE-----LKLV-FPQVNVSPENYI 164
             E    +D + +SPK                I    E     LK+V F + + +    +
Sbjct: 118 AREWFSELDVLIISPKPPSSGMEMDWQRLSDCIARAGEGTEVALKIVIFDEADYAFARAV 177

Query: 165 GFDF--ERFSLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQTH 205
                     LQP +    P       + I    +  +W             R+  Q H
Sbjct: 178 SARHGGLPLYLQPGNHTPPPADAHYAPIDIEGVMRRMRWLINKVAADAWFSVRVLPQLH 236


>gi|254707503|ref|ZP_05169331.1| Radical SAM domain protein [Brucella pinnipedialis M163/99/10]
 gi|254708957|ref|ZP_05170768.1| Radical SAM domain protein [Brucella pinnipedialis B2/94]
 gi|256030484|ref|ZP_05444098.1| Radical SAM domain protein [Brucella pinnipedialis M292/94/1]
 gi|261314986|ref|ZP_05954183.1| radical SAM domain-containing protein [Brucella pinnipedialis
           M163/99/10]
 gi|261316456|ref|ZP_05955653.1| radical SAM domain-containing protein [Brucella pinnipedialis
           B2/94]
 gi|265987526|ref|ZP_06100083.1| radical SAM domain-containing protein [Brucella pinnipedialis
           M292/94/1]
 gi|261295679|gb|EEX99175.1| radical SAM domain-containing protein [Brucella pinnipedialis
           B2/94]
 gi|261304012|gb|EEY07509.1| radical SAM domain-containing protein [Brucella pinnipedialis
           M163/99/10]
 gi|264659723|gb|EEZ29984.1| radical SAM domain-containing protein [Brucella pinnipedialis
           M292/94/1]
          Length = 251

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++    
Sbjct: 15  IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++
Sbjct: 63  HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGTLIKHGKAEGYRFALETQGSV 122

Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
             +    +D + +SPK            L          P   + F
Sbjct: 123 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 168


>gi|229917714|ref|YP_002886360.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Exiguobacterium sp. AT1b]
 gi|229469143|gb|ACQ70915.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Exiguobacterium sp. AT1b]
          Length = 236

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 87/239 (36%), Gaps = 51/239 (21%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + E+F  T QGEG   G+  +F R +GC+            +C +CD+ F      K 
Sbjct: 8   IPVLEVFGPTFQGEGRAIGQKTMFVRTAGCDY-----------RCSWCDSAFTWDGSEKP 56

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGT 121
                D++   ++   +       Y  ++GG PLL      L+  L KRG  +AVET G+
Sbjct: 57  DMLTADEVIARLDALGMYD-----YVTISGGNPLLIAAMEDLVVKLKKRGVTLAVETQGS 111

Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV------------NVSPENYIGFD 167
              +    ID + +SPK          ++L  +  ++            + +   Y    
Sbjct: 112 RYQDWLTQIDDVTLSPKPPSSGMKTNWEQLDAIVERLRPEQTTFKVAVFDEADLAYAKEV 171

Query: 168 FERF-----SLQ---PMDGPF-------LEENTNLAISYCFQNPKW---RLSVQTHKFI 208
            +R+      L    P  G         L     L      ++P W   R+  Q H  +
Sbjct: 172 QQRYSPDVMYLSAGNPEPGADGDITDAQLRRLKQLWED-VARDPSWQSVRVLPQLHTLL 229


>gi|36958586|gb|AAQ87054.1| ExsD protein [Sinorhizobium fredii NGR234]
          Length = 245

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 15/140 (10%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G   VF R  GC+            +C +CD+    +     
Sbjct: 9   IRVSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDSLHA-VDSAYR 56

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +      ++  E       +     L+GG P +Q    LI   +  G+  A+ET G++
Sbjct: 57  DEWRAMTTDEVWSEVTQLSGGQPVMVSLSGGNPAIQPFGALIARGHAEGYRFALETQGSV 116

Query: 123 --EPPQGIDWICVSPKAGCD 140
             +    +D + +SPK    
Sbjct: 117 ARDWFAELDMLVLSPKPPSS 136


>gi|227820048|ref|YP_002824019.1| radical SAM domain protein [Sinorhizobium fredii NGR234]
 gi|227339047|gb|ACP23266.1| radical SAM domain protein [Sinorhizobium fredii NGR234]
          Length = 242

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 15/140 (10%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G   VF R  GC+            +C +CD+    +     
Sbjct: 6   IRVSEIFGPTIQGEGALIGLPTVFVRTGGCDY-----------RCSWCDSLHA-VDSAYR 53

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +      ++  E       +     L+GG P +Q    LI   +  G+  A+ET G++
Sbjct: 54  DEWRAMTTDEVWSEVTQLSGGQPVMVSLSGGNPAIQPFGALIARGHAEGYRFALETQGSV 113

Query: 123 --EPPQGIDWICVSPKAGCD 140
             +    +D + +SPK    
Sbjct: 114 ARDWFAELDMLVLSPKPPSS 133


>gi|99081885|ref|YP_614039.1| radical SAM family protein [Ruegeria sp. TM1040]
 gi|99038165|gb|ABF64777.1| Radical SAM [Ruegeria sp. TM1040]
          Length = 235

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 81/243 (33%), Gaps = 57/243 (23%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
               I EIF  T+QGEG   G   VF R  GC+            +C +CD+    +   
Sbjct: 1   MTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDSLHA-VDSA 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
               +   +   + +E       +     L+GG P +Q   PLI      G+  A ET G
Sbjct: 49  HRHSWAAMETEAVWQEVRRLSGDQPLTVSLSGGNPAIQDFGPLIARGKAAGYRFACETQG 108

Query: 121 TIEPPQGIDW--ICVSPKAGCD-----------------------LKIKGGQELKLVFPQ 155
           +I  P   D   + +SPK                           +KI    E   ++ +
Sbjct: 109 SIPRPWFSDLETLVLSPKPPSSGEDVDWGAFIACRKIGAGARQQVMKIVIFDEADYLWAR 168

Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW-------------RLSV 202
                 + +        LQP   P ++  T + ++   +  +W             R+  
Sbjct: 169 EVHRRHSDLPL-----YLQP-GNPEVDPETPVDLNAQAERLRWLTERAMGERWFAPRILP 222

Query: 203 QTH 205
           Q H
Sbjct: 223 QLH 225


>gi|325969441|ref|YP_004245633.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28]
 gi|323708644|gb|ADY02131.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 218

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 22/140 (15%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + E+F + QGEG HAG  AVF R + CNL           +C +CDT +  + G   G  
Sbjct: 3   VVEVFRSWQGEGPHAGEEAVFLRLARCNL-----------RCVWCDTKYSWLGGVSMG-- 49

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
               +  +       G  E ++ V+TGGEPLL       L+  +  RG+ + VETNGT+ 
Sbjct: 50  ----IDAVFRRLIEVGGDEIKHLVITGGEPLLWWRELRQLLIIVKGRGWFVEVETNGTLR 105

Query: 124 PPQGIDWI---CVSPKAGCD 140
           P + +D++    VS K    
Sbjct: 106 PGELLDYVDEFNVSSKLSNS 125


>gi|21673157|ref|NP_661222.1| radical activating enzyme, putative [Chlorobium tepidum TLS]
 gi|21646235|gb|AAM71564.1| radical activating enzyme, putative [Chlorobium tepidum TLS]
          Length = 220

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 78/230 (33%), Gaps = 49/230 (21%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
            +I EIF ++QGE   AG    F R +GC              CR+CDT +       G 
Sbjct: 7   LNISEIFYSIQGESSFAGWPCAFVRLAGC-----------GHGCRYCDTTYA---EEPGT 52

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
              +D++   +         +     +TGGEPLLQ     L+ AL  R   + +ET G +
Sbjct: 53  AMTIDEIMHRVLA------FDAPCVEVTGGEPLLQSGTFGLLSALCDRHPVVLLETGGFL 106

Query: 123 EPP-------QGIDWICVSPKAG-----------------CDLKIKGGQELKLVFPQVNV 158
                       ID    S                      + KI    E   ++ +  +
Sbjct: 107 PVDRVDPRVHAIIDIKAPSSGVMEHNCAANFTLALNEPERFEFKIVVASEADYLWAKSYI 166

Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           +    +G         P+ G        LA          R+ +Q HK+I
Sbjct: 167 AGHGILG--KCSIIFGPVFGQLEPRL--LAEWMLRDRLPVRMQLQLHKYI 212


>gi|148559581|ref|YP_001259791.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Brucella ovis ATCC 25840]
 gi|148370838|gb|ABQ60817.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Brucella ovis ATCC 25840]
          Length = 247

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++    
Sbjct: 11  IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 58

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++
Sbjct: 59  HEWKPISVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSV 118

Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
             +    +D + +SPK            L          P   + F
Sbjct: 119 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 164


>gi|294498043|ref|YP_003561743.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus megaterium QM B1551]
 gi|294347980|gb|ADE68309.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus megaterium QM B1551]
          Length = 243

 Score =  127 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 16/156 (10%)

Query: 3   LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
              + EIF  T+QGEG   GR  +F R +GC+             C +CD+ F    G+ 
Sbjct: 4   TIPVLEIFGPTIQGEGMVVGRKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSA 51

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNG 120
                      +  E    G +   +  ++GG P L++    L++ L+  G + A+ET G
Sbjct: 52  KNDIRQLTAEQIWTELKEIGGECFDHVTISGGNPALIKAIGSLVELLHSHGVKAALETQG 111

Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
           +   +    ID + +SPK    L       L  +  
Sbjct: 112 SRYQDWFLKIDDLTISPKPPSSLMKTNFSVLDDIIE 147


>gi|254464092|ref|ZP_05077503.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Rhodobacterales bacterium Y4I]
 gi|206685000|gb|EDZ45482.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Rhodobacterales bacterium Y4I]
          Length = 236

 Score =  127 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 70/196 (35%), Gaps = 33/196 (16%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    I EIF  T+QGEG   G   VF R  GC+            +C +CD+    +  
Sbjct: 1   MTTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDSMHA-VDS 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
                + V    D++ E       +     ++GG P +Q   P+I    + G+  A ET 
Sbjct: 49  AYRHDWAVKTPEDVMAEVRRLSGGKPLTVSISGGNPAIQDFAPVIAIGKEEGYRFACETQ 108

Query: 120 GTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQV-------------NVSPENYI 164
           G++  P    +D + +SPK     +     +      Q              + +   + 
Sbjct: 109 GSVSQPWFADLDTLVLSPKPPSSGEKTDWHKFTCCLHQAKGCGQAVMKIVVFDDTDYAWA 168

Query: 165 GFDFER-----FSLQP 175
               ER       LQP
Sbjct: 169 KAAAERHPELPLYLQP 184


>gi|147677735|ref|YP_001211950.1| organic radical activating enzymes [Pelotomaculum thermopropionicum
           SI]
 gi|146273832|dbj|BAF59581.1| organic radical activating enzymes [Pelotomaculum thermopropionicum
           SI]
          Length = 245

 Score =  127 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 87/258 (33%), Gaps = 64/258 (24%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG- 59
           M+ Y + EIF ++QGEG   G   VF RF GCNL            C FCDT + G    
Sbjct: 1   MRAY-VSEIFSSVQGEGLLTGCRQVFIRFYGCNL-----------NCSFCDTKYGGPPAC 48

Query: 60  ------TKGGRY----NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQAL 107
                   GG +    N  ++ +                 LTGGEPLL       LI  +
Sbjct: 49  CRIESLPAGGDFRYLPNPLKVGEAASAAASYDLSLHHSVSLTGGEPLLHTAFLKELIPLV 108

Query: 108 NKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLKIKGGQE-------------- 148
                 I +ETNGT+          ID + +  K      +    E              
Sbjct: 109 KGTRHGIYLETNGTLPGNLLEVIDLIDMVSMDFKLPSVSGMPPFWEKHWDFLKIAASRKV 168

Query: 149 -LKLVFPQVNVSPENYIGFDFER-------FSLQPMDGPFLE---------ENTNLAISY 191
            +K+V  Q     E        +         +QP+ G             E   LA+ +
Sbjct: 169 LVKVVVGQNTAHEEIEKSASIIKSVSSNIPMVIQPVTGSDGTLGITASRVLELQKLALKF 228

Query: 192 CFQNPKWRLSVQTHKFIG 209
                  R+  QTHK IG
Sbjct: 229 L---NDVRVIPQTHKVIG 243


>gi|308067859|ref|YP_003869464.1| Organic radical activating enzyme [Paenibacillus polymyxa E681]
 gi|305857138|gb|ADM68926.1| Organic radical activating enzyme [Paenibacillus polymyxa E681]
          Length = 287

 Score =  127 bits (320), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 16/157 (10%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + E+F  T+QGEG   GR  +F R +GC+             C +CD+ F    G+  
Sbjct: 22  IPVLEVFGPTVQGEGMVIGRKTMFVRTAGCDY-----------HCSWCDSAFTW-DGSAK 69

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121
            +       D+ +E    G +   +  L+GG P LL     LI  L  +G   AVET G+
Sbjct: 70  DQIRRLSATDIWQELKAIGGERFSHVTLSGGNPALLPQLGELITLLRSQGIATAVETQGS 129

Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156
              E    ID + +SPK            L  +  ++
Sbjct: 130 RWQEWLYDIDEVTLSPKPPSSGMTTNWGVLDDIVARL 166


>gi|295703393|ref|YP_003596468.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus megaterium DSM 319]
 gi|294801052|gb|ADF38118.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus megaterium DSM 319]
          Length = 243

 Score =  127 bits (320), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 16/156 (10%)

Query: 3   LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
              + EIF  T+QGEG   GR  +F R +GC+             C +CD+ F    G+ 
Sbjct: 4   TIPVLEIFGPTIQGEGMVVGRKTMFVRTAGCDY-----------SCSWCDSAFTW-DGSA 51

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNG 120
                      +  E    G +   +  ++GG P L++    L++ L+  G + A+ET G
Sbjct: 52  KNDIRQLTAEQIWTELKEIGGECFDHVTISGGNPALIKAIGSLVELLHSHGVKAALETQG 111

Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
           +   +    ID + +SPK    L       L  +  
Sbjct: 112 SRYQDWFLKIDDLTISPKPPSSLMKTNFAVLDDIIE 147


>gi|228475320|ref|ZP_04060044.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           hominis SK119]
 gi|314936991|ref|ZP_07844338.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus hominis subsp. hominis C80]
 gi|228270696|gb|EEK12110.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           hominis SK119]
 gi|313655610|gb|EFS19355.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Staphylococcus hominis subsp. hominis C80]
          Length = 238

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 16/158 (10%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
               + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G+
Sbjct: 3   SKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGS 50

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
                 +    D+ +     G  +  +  ++GG P L++    L+    ++    A+ET 
Sbjct: 51  AKDDIELLTAQDIYDRLKEIGGNQFDHVTISGGNPALIKGIQDLVDLFEEKNIFTALETQ 110

Query: 120 GTIEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155
           G+   P  + I+ + +SPK      +   + L  V  Q
Sbjct: 111 GSKFQPWMRQINDLTISPKPPSSNMVPNLEILDSVIEQ 148


>gi|254690112|ref|ZP_05153366.1| Radical SAM domain protein [Brucella abortus bv. 6 str. 870]
 gi|256258366|ref|ZP_05463902.1| Radical SAM domain protein [Brucella abortus bv. 9 str. C68]
 gi|260755651|ref|ZP_05867999.1| radical SAM domain-containing protein [Brucella abortus bv. 6 str.
           870]
 gi|260884676|ref|ZP_05896290.1| radical SAM domain-containing protein [Brucella abortus bv. 9 str.
           C68]
 gi|297247208|ref|ZP_06930926.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Brucella abortus bv. 5 str. B3196]
 gi|260675759|gb|EEX62580.1| radical SAM domain-containing protein [Brucella abortus bv. 6 str.
           870]
 gi|260874204|gb|EEX81273.1| radical SAM domain-containing protein [Brucella abortus bv. 9 str.
           C68]
 gi|297174377|gb|EFH33724.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Brucella abortus bv. 5 str. B3196]
          Length = 251

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 15/166 (9%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++    
Sbjct: 15  IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDY-----------RCAWCDSLHA-VESRFR 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++
Sbjct: 63  HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKFEGYRFALETQGSV 122

Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
             +    +D + +SPK            L          P   + F
Sbjct: 123 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 168


>gi|298250150|ref|ZP_06973954.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Ktedonobacter racemifer DSM 44963]
 gi|297548154|gb|EFH82021.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Ktedonobacter racemifer DSM 44963]
          Length = 247

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 15/136 (11%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I E+F  T+QGEG   G+  VF R  GC+            +C+ CDT +  +     G 
Sbjct: 9   ISELFGCTIQGEGALIGKPTVFVRTGGCDY-----------RCQRCDTLYAVLP-EHRGE 56

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           +      ++  +             L+GG P +Q    L+   +  G+  A+ET G+I  
Sbjct: 57  WQQMTTQEVFAQVRELAHNRPILVTLSGGNPAMQPLEELLDLGHTEGYTFAIETQGSIAQ 116

Query: 125 P--QGIDWICVSPKAG 138
           P    +D++ +SPKA 
Sbjct: 117 PWFAKLDYLTLSPKAP 132


>gi|205373223|ref|ZP_03226027.1| radical SAM domain-containing protein [Bacillus coahuilensis m4-4]
          Length = 252

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 18/169 (10%)

Query: 1   MKL--YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI 57
           M+L  + + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F   
Sbjct: 1   MRLNKFPVLEIFGPTVQGEGMVIGQKTMFIRTAGCDY-----------SCSWCDSSFTW- 48

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAV 116
            G+      +    ++  E    G +   +  ++GG P LL+    L+   +  G + A+
Sbjct: 49  DGSAKEDIRLLSADEIWSELVQVGGECFNHVTISGGNPALLKHLNELLDVFHNHGIQSAL 108

Query: 117 ETNGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY 163
           ET G+   +    ID + +SPK            L  +  ++ V+ + +
Sbjct: 109 ETQGSRWQDWFLDIDDLTLSPKPPSSGMTTDFSILDSIIQKLLVNNKAF 157


>gi|254476144|ref|ZP_05089530.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Ruegeria sp. R11]
 gi|214030387|gb|EEB71222.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Ruegeria sp. R11]
          Length = 235

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 56/243 (23%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M L  I EIF  T+QGEG   G   VF R  GC+            +C +CD+    +  
Sbjct: 1   MSL-RIAEIFGPTIQGEGALIGEPTVFVRTGGCDY-----------RCSWCDSLHA-VDS 47

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
                +      D+  E       +     L+GG P +Q    LI    + G+  A ET 
Sbjct: 48  KFRDTWMPMTTRDVWAEVTHLSGGQPLTVSLSGGNPAIQDFAELIAMGKEAGYRFACETQ 107

Query: 120 GTI--EPPQGIDWICVSPKAGCD-----------------------LKIKGGQELKLVFP 154
           G+I       +D + +SPK                           LKI    E+   + 
Sbjct: 108 GSINQAWFSKLDTLVLSPKPPSSGHKVDWLKFGSCLAAAKDCPNVVLKIVVFDEVDYDWA 167

Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEEN------TNLAISYCFQNP---KW---RLSV 202
           +V       +        LQP +     E       T   + +        KW   R+  
Sbjct: 168 RVVADRYPELPL-----YLQPGNPTVDPETPVDLTETTARLRWLIDKVTADKWFAPRVLP 222

Query: 203 QTH 205
           Q H
Sbjct: 223 QLH 225


>gi|291279399|ref|YP_003496234.1| hypothetical protein DEFDS_1008 [Deferribacter desulfuricans SSM1]
 gi|290754101|dbj|BAI80478.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 231

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 88/244 (36%), Gaps = 46/244 (18%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI--- 57
           M    +KEIF ++QGEG + G   +F RF+GCN             C  CDT++      
Sbjct: 1   MSKAFVKEIFKSVQGEGKYVGARQLFIRFAGCN-----------INCVGCDTNYTVDRYF 49

Query: 58  ---QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGF 112
                        D L +L+   +           LTGGEPL+  D     +Q L   G 
Sbjct: 50  LCCDKKYENPVTPDNLFNLVVNNFDLNLFHS--VSLTGGEPLIYCDFLKLFLQYLKNAGV 107

Query: 113 EIAVETNGTI-----EPPQGIDWICVSPK----------AGCDLKIKGGQE---LKLVF- 153
              +ET+G I     E    +D I V  K              +K+K   E    K+V  
Sbjct: 108 RTFLETSGLIVDSILELEDYLDIISVDLKLKEVFGVEFNRDGIIKLKDINEKVYFKIVVG 167

Query: 154 -----PQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC-FQNPKWRLSVQTHKF 207
                 ++  +     G   E   +  +D  F     +  +  C + N       Q HK 
Sbjct: 168 ENLPLEKIENTIHLIKGIGVEELYIHFIDNKFNYSLLDKILDLCYYHNVMAYFIPQVHKL 227

Query: 208 IGIR 211
           IG++
Sbjct: 228 IGMK 231


>gi|259419192|ref|ZP_05743109.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Silicibacter sp. TrichCH4B]
 gi|259345414|gb|EEW57268.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Silicibacter sp. TrichCH4B]
          Length = 235

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 77/243 (31%), Gaps = 57/243 (23%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
               I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++  
Sbjct: 1   MTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDSLHA-VESQ 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
               +       +  +       +     L+GG P +Q   PLI      G+  A ET G
Sbjct: 49  YRHSWAPMDTDAVWAKVHKLSGGQPLTVSLSGGNPAIQDFGPLITKGRAAGYRFACETQG 108

Query: 121 TIEPP--QGIDWICVSPKAGCD-----------------------LKIKGGQELKLVFPQ 155
           +I  P    +D + +SPK                           +KI    E    + +
Sbjct: 109 SIPRPWFADLDTLVLSPKPPSSGENVDWDAFDRCRAIGAGARQQVMKIVIFDETDYQWAR 168

Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW-------------RLSV 202
                 + +        LQP   P ++  T + +        W             R+  
Sbjct: 169 EVHRHHSDLAL-----YLQP-GNPEVDPATPVDLQTLANRLGWLTEKAMADGWFAPRILP 222

Query: 203 QTH 205
           Q H
Sbjct: 223 QLH 225


>gi|77919241|ref|YP_357056.1| organic radical activating protein [Pelobacter carbinolicus DSM
           2380]
 gi|77545324|gb|ABA88886.1| organic radical activating enzyme [Pelobacter carbinolicus DSM
           2380]
          Length = 253

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 87/250 (34%), Gaps = 59/250 (23%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV------GIQGTK 61
           EIF ++QGEGG  G   VF R +GCNL            C +CDTDF             
Sbjct: 15  EIFSSIQGEGGLVGCRQVFIRLAGCNL-----------DCAYCDTDFAPQDTCRIEDAPG 63

Query: 62  GGRY-------NVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGF 112
            G++        ++ +AD++               LTGGEPLL  Q+    +  L +   
Sbjct: 64  SGQFRSVTNPVALEVVADILGAWTKRAPGMHHSISLTGGEPLLQGQLLRDWVPVLKEI-L 122

Query: 113 EIAVETNGTI-----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD 167
            I +ETNGT           ++W+ +  K      +    +L   F ++      ++   
Sbjct: 123 PIHLETNGTCPDALAPLLPHLEWVSMDVKLASTTGMPTPWKLHRAFLEIAAQAHVWVKAV 182

Query: 168 FER----------------------FSLQPMDGP-----FLEENTNLAISYCFQNPKWRL 200
                                      LQP           E    L  +    + K R+
Sbjct: 183 VCESTPAEEMHDLGRLVHQIAPHVTIFLQPATRQGKVDMSAERLLALQTALSRHHGKVRV 242

Query: 201 SVQTHKFIGI 210
             QTH F+G+
Sbjct: 243 VPQTHVFLGL 252


>gi|13474824|ref|NP_106394.1| hypothetical protein mll5796 [Mesorhizobium loti MAFF303099]
 gi|14025580|dbj|BAB52180.1| mll5796 [Mesorhizobium loti MAFF303099]
          Length = 245

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 15/166 (9%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G   VF R  GC+            +C +CD+     +  + 
Sbjct: 9   IRVSEIFGPTIQGEGVLIGLPTVFVRTGGCDY-----------RCSWCDSLHAVDRRFRH 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             + +     + ++       +     L+GG P +Q    LI   +  G+  A+ET G++
Sbjct: 58  D-WEMMSSDAVWQKVIALSSGQPVMVSLSGGNPAIQPLGQLIDRGHGEGYRFALETQGSV 116

Query: 123 E--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
                  +D + +SPK                       P+  +  
Sbjct: 117 SKQWFADLDVLVLSPKPPSSEMTTDWAAFDACLEAAQDKPQTALKL 162


>gi|163754267|ref|ZP_02161390.1| GTPase ObgE [Kordia algicida OT-1]
 gi|161326481|gb|EDP97807.1| GTPase ObgE [Kordia algicida OT-1]
          Length = 253

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 76/194 (39%), Gaps = 39/194 (20%)

Query: 1   MKLYSIK------EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF 54
           M    I       EIF ++QGEG + G+ +VF R S CNL            C +CDTD+
Sbjct: 1   MTKLKIANLNGKPEIFHSIQGEGKNLGQPSVFIRTSLCNL-----------HCIWCDTDY 49

Query: 55  VG-----------IQGTKGGRYNVDQ-LADLIEEQWI--TGEKEGRYCVLTGGEPL--LQ 98
                               +Y +D+ +  L  E+      +   +  VLTGGEP+  LQ
Sbjct: 50  TWNWEKTRFAHVKDSDPLYEKYKMDEMIISLTLEEIYNEVAKSGCKNIVLTGGEPMMQLQ 109

Query: 99  VDVPLIQAL--NKRGFEIAVETNGTIEPPQG----IDWICVSPKAGCDLKIKGGQELKLV 152
               L++        +   +ETNGT+ P       ID   VSPK       K  +E    
Sbjct: 110 ELSALMKFFNTKATDYFFEIETNGTLLPDATFDALIDQYNVSPKLANSNNPKKLREKPEA 169

Query: 153 FPQVNVSPENYIGF 166
           +   + + +    F
Sbjct: 170 YQYFSKNEKAVFKF 183


>gi|20804218|emb|CAD31244.1| HYPOTHETICAL CONSERVED PROTEIN [Mesorhizobium loti R7A]
          Length = 245

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 15/166 (9%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G   VF R  GC+            +C +CD+     +  + 
Sbjct: 9   IRVSEIFGPTIQGEGVLIGLPTVFVRTGGCDY-----------RCSWCDSLHAVDRRFRH 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             + +     + ++       +     L+GG P +Q    LI   +  G+  A+ET G++
Sbjct: 58  D-WEMMSPDAVWQKVIALSGGQPVMVSLSGGNPAIQPLSQLIDRGHGEGYRFALETQGSV 116

Query: 123 E--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
                  +D + +SPK                       P+  +  
Sbjct: 117 SKQWFADLDVLVLSPKPPSSEMTTDWAAFDACLEAAQDKPQMALKL 162


>gi|303247444|ref|ZP_07333716.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
 gi|302491140|gb|EFL51032.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
          Length = 210

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 89/230 (38%), Gaps = 52/230 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           +  + EIF ++QGE  +AG    F R SGCNL            C +CDT +        
Sbjct: 1   MLRVHEIFASIQGESSYAGYPCAFLRLSGCNL-----------DCSWCDTRYAS------ 43

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGT 121
             +    L +  ++    G        LTGGEPLL+     L  +L   G  + VETNG+
Sbjct: 44  ASFTAMSLDEARQKLLALGL---PLVELTGGEPLLEPLAPALAASLADAGATVLVETNGS 100

Query: 122 IEPPQGIDWICVSPK--AGCDLKIKG-GQELKLVFPQVN-VSPENYIGF--DFERFSL-- 173
           +      D   + P+  A  D+K  G G E K  +  ++ + P + + F        L  
Sbjct: 101 L------DIGVLDPRVIAVMDVKCPGSGMEGKNDYANLDRLRPRDEVKFVLAGREDYLFA 154

Query: 174 ---------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
                           P+ G        LA        + RL++Q HK+I
Sbjct: 155 RDVVRRVPAGNAVHFSPVAGRLDPA--ELAAWMVADASRARLALQLHKYI 202


>gi|70727187|ref|YP_254103.1| hypothetical protein SH2188 [Staphylococcus haemolyticus JCSC1435]
 gi|68447913|dbj|BAE05497.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 238

 Score =  125 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 16/156 (10%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G+  
Sbjct: 5   IPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAK 52

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121
               +    ++  +    G     +  ++GG P L++    L+    ++    A+ET G+
Sbjct: 53  EDIKLMTAEEIYNQLKKIGGDRFDHVTISGGNPALIKGIQDLVDLFEEKQIYTALETQGS 112

Query: 122 IEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155
              P  + I+ + +SPK            L  V  Q
Sbjct: 113 KFQPWMRQINDLTISPKPPSSNMKPNIDILDSVIEQ 148


>gi|313683431|ref|YP_004061169.1| radical sam domain protein [Sulfuricurvum kujiense DSM 16994]
 gi|313156291|gb|ADR34969.1| Radical SAM domain protein [Sulfuricurvum kujiense DSM 16994]
          Length = 252

 Score =  125 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 9/131 (6%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS----GREQDRLSAQCRFCDTDFVGI- 57
           +  + E F ++QGEG + G  ++F RF GCNL       RE     ++   CDT +    
Sbjct: 1   MLYLVEHFYSVQGEGKYTGVPSLFFRFGGCNLKCEGFGCRESAPDGSEVLGCDTVYAVDR 60

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFE 113
           +G       +++L  LI              VLTGGEPL+  + P     I+ L   G  
Sbjct: 61  KGFGELWMEIEELQSLIWIMNGYRLPPHVDVVLTGGEPLIYANEPIFVEFIEYLIAHGHR 120

Query: 114 IAVETNGTIEP 124
           +  ETN TI P
Sbjct: 121 VTFETNATIAP 131


>gi|154175412|ref|YP_001407498.1| FO synthase subunit 2 [Campylobacter curvus 525.92]
 gi|153793229|gb|EAU01215.2| FO synthase subunit 2 2 (7,8-didemethyl-8-hydroxy-5-deazariboflavin
           synthase subunit 2 2) [Campylobacter curvus 525.92]
          Length = 256

 Score =  125 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/129 (37%), Positives = 66/129 (51%), Gaps = 11/129 (8%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS-----GREQDRLSAQCRFCDTDFVGIQG- 59
           + E FL++QGEG + GR+AVF RF GCNL           ++       CD+     +G 
Sbjct: 11  LVESFLSVQGEGAYQGRLAVFLRFFGCNLNCIGFDVKTRSNKTGEILIGCDSARAVFKGH 70

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIA 115
            K  RY+ D++  L++     G K     VLTGGEPL+         L+Q L   GF++ 
Sbjct: 71  FKSKRYSSDEILSLVK-NICKGLKTRPIVVLTGGEPLIHHKNENFINLVQNLLNLGFDVH 129

Query: 116 VETNGTIEP 124
            ETNGTIE 
Sbjct: 130 FETNGTIEV 138


>gi|45659043|ref|YP_003129.1| Fe-S oxidoreductase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45602289|gb|AAS71766.1| Fe-S oxidoreductase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 243

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 95/239 (39%), Gaps = 50/239 (20%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           S+ EI+L+L GEG   G   +F R +GC+L  G    R      +CDT +       G  
Sbjct: 13  SVHEIYLSLSGEGISTGIPTIFVRMAGCSLRCGMTVGRKL----WCDTPYALSPKA-GEE 67

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI---------- 114
            +V+Q+ D I+E      +     +LTGGEPL   +      L    F I          
Sbjct: 68  MSVNQVLDKIQELSAVNIQ----ILLTGGEPLEGRNREFSITLGNEIFRIRNSSGFYPRP 123

Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKG-GQELKLVFPQVNV-----SPENYIGF-- 166
            VETNG  E  +G+D          D K+ G G E ++    + +     +P + I F  
Sbjct: 124 RVETNGA-ESIEGMDQFVF----TLDYKLPGSGMEDRMNLKNLEIYKERKNPLDEIKFVI 178

Query: 167 ----DFER-------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
               DFER                 P+ G    E     I Y       RLS+QTHK+I
Sbjct: 179 RDKNDFERCLEIIEKHALVGNLLASPVQGELSPEILAEWIKYSL-GSGLRLSIQTHKYI 236


>gi|305432704|ref|ZP_07401864.1| radical SAM domain protein [Campylobacter coli JV20]
 gi|304444213|gb|EFM36866.1| radical SAM domain protein [Campylobacter coli JV20]
          Length = 247

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 17/181 (9%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTKG 62
           + E FL++QGEG ++G++A+F RF+GCN      G +  +     + CDT          
Sbjct: 3   LVESFLSIQGEGKYSGKLAIFMRFAGCNFNCSGFGVKLIKNGKTLKGCDTIRAVFTKEFN 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
             Y +   ++L +      +      V+TGGEPL+  + P     IQAL K  FE+  E+
Sbjct: 63  EEYEILNASELFKRVLDLKKDFNPIVVITGGEPLIHHENPEFIDFIQALLKNNFEVHFES 122

Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
           NG+IE      P        +S K         G+E +L F  +    ++Y    F +F 
Sbjct: 123 NGSIELDFEKYPFYKECVFALSVKLQNSGM---GKEKRLNFNALK-GFKHYAKDSFYKFV 178

Query: 173 L 173
           L
Sbjct: 179 L 179


>gi|315658944|ref|ZP_07911811.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           lugdunensis M23590]
 gi|315496068|gb|EFU84396.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
           lugdunensis M23590]
          Length = 238

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 18/175 (10%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G+  
Sbjct: 5   IPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAK 52

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121
            +  +    ++ E+    G     +  ++GG P L++    L+          A+ET G+
Sbjct: 53  DQIQLMSATEIYEKLIEIGGDCFDHVTISGGNPALIKGIQDLVDLFETEHIATALETQGS 112

Query: 122 IEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFS 172
              P    I+ + +SPK          + L  V  Q          + FD E ++
Sbjct: 113 KFQPWMTQINDLTISPKPPSSSMTPNLEVLDQVIAQCVPQSLNLKVVVFDDEDYA 167


>gi|163742266|ref|ZP_02149654.1| organic-radical-activating protein [Phaeobacter gallaeciensis 2.10]
 gi|161384596|gb|EDQ08977.1| organic-radical-activating protein [Phaeobacter gallaeciensis 2.10]
          Length = 246

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 57/142 (40%), Gaps = 15/142 (10%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
               I EIF  T+QGEG   G   VF R  GC+            +C +CD+    +   
Sbjct: 12  TTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDSLHA-VDSR 59

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
               +      ++ +E       +     L+GG P +Q   PLI    + G+  A ET G
Sbjct: 60  YRDTWAPMATDEVWQEVTRLSGGQPLTVSLSGGNPAIQNFAPLIAQGKEAGYRFACETQG 119

Query: 121 TIEPP--QGIDWICVSPKAGCD 140
           +I  P    +D + +SPK    
Sbjct: 120 SISQPWFAALDTLVLSPKPPSS 141


>gi|294828448|ref|NP_714217.2| organic radical activating enzyme [Leptospira interrogans serovar
           Lai str. 56601]
 gi|293386302|gb|AAN51235.2| organic radical activating enzyme [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 237

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 95/239 (39%), Gaps = 50/239 (20%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           S+ EI+L+L GEG   G   +F R +GC+L  G    R      +CDT +       G  
Sbjct: 7   SVHEIYLSLSGEGISTGIPTIFVRMAGCSLRCGMTVGRKL----WCDTPYALSPKA-GEE 61

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI---------- 114
            +V+Q+ D I+E      +     +LTGGEPL   +      L    F I          
Sbjct: 62  MSVNQVLDKIQELSAVNIQ----ILLTGGEPLEGRNREFSITLGNEIFRIRNSSGFYPRP 117

Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKG-GQELKLVFPQVNV-----SPENYIGF-- 166
            VETNG  E  +G+D          D K+ G G E ++    + +     +P + I F  
Sbjct: 118 RVETNGA-ESIEGMDQFVF----TLDYKLPGSGMEDRMNLKNLEIYKERKNPLDEIKFVI 172

Query: 167 ----DFER-------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
               DFER                 P+ G    E     I Y       RLS+QTHK+I
Sbjct: 173 RDKNDFERCLEIIEKHALVGNLLASPVQGELSPEILAEWIKYSL-GSGLRLSIQTHKYI 230


>gi|290580634|ref|YP_003485026.1| hypothetical protein SmuNN2025_1108 [Streptococcus mutans NN2025]
 gi|254997533|dbj|BAH88134.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 238

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 65/159 (40%), Gaps = 21/159 (13%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T QGEG   G+  +F R  GC+             C +CD+ F      K 
Sbjct: 9   LPVLEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEKP 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNG 120
                DQ+ + +++          Y  L+GG P L       L++ L KR   +AVET G
Sbjct: 58  TMMTSDQIIEALDKLGTYD-----YVTLSGGNPCLLAANMAQLVRKLKKRQVTLAVETQG 112

Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
           +   E  + ID + +SPK          Q L  +   ++
Sbjct: 113 SRWQEWLKAIDQVTLSPKPPSSKMKVNLQTLDFIVSNLD 151


>gi|24379363|ref|NP_721318.1| hypothetical protein SMU.916c [Streptococcus mutans UA159]
 gi|24377290|gb|AAN58624.1|AE014932_7 conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 243

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 65/159 (40%), Gaps = 21/159 (13%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T QGEG   G+  +F R  GC+             C +CD+ F      K 
Sbjct: 14  LPVLEIFGPTFQGEGRAIGQKTMFVRTGGCDY-----------HCDWCDSAFTWDGSEKP 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNG 120
                DQ+ + +++          Y  L+GG P L       L++ L KR   +AVET G
Sbjct: 63  TMMTSDQIIEALDKLGTYD-----YVTLSGGNPCLLAANMAQLVRKLKKRQVTLAVETQG 117

Query: 121 TI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
           +   E  + ID + +SPK          Q L  +   ++
Sbjct: 118 SRWQEWLKAIDQVTLSPKPPSSKMKVNLQTLDFIVSNLD 156


>gi|119386888|ref|YP_917943.1| radical SAM domain-containing protein [Paracoccus denitrificans
           PD1222]
 gi|119377483|gb|ABL72247.1| preQ(0) biosynthesis protein QueE [Paracoccus denitrificans PD1222]
          Length = 235

 Score =  124 bits (313), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 72/195 (36%), Gaps = 33/195 (16%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
               I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++ +
Sbjct: 1   MTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCVWCDSLHA-VESS 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
               +       +  E       +     L+GG P +Q   PLI    ++G+  A ET G
Sbjct: 49  HRHEWRPMSAEAVWAEVRRLSGGQPLTVSLSGGNPAIQDFTPLIALGREQGYRFACETQG 108

Query: 121 TIEPP--QGIDWICVSPKAGCDLKIKGGQE---------------LKLV-FPQVNVSPEN 162
           ++  P    +  + +SPK     ++                    LK+V F QV++    
Sbjct: 109 SVAQPWFAELSTLVLSPKPPSSGQVVDWDAFDRCLKAGEGAGQRVLKIVIFDQVDLDWAR 168

Query: 163 YIGFDFE--RFSLQP 175
            +          LQP
Sbjct: 169 EVAARHPGLPLYLQP 183


>gi|320530179|ref|ZP_08031249.1| radical SAM domain protein [Selenomonas artemidis F0399]
 gi|320137612|gb|EFW29524.1| radical SAM domain protein [Selenomonas artemidis F0399]
          Length = 243

 Score =  124 bits (313), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 66/250 (26%), Positives = 96/250 (38%), Gaps = 65/250 (26%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-FVGIQGTKGG 63
           +I EIF ++QGEG + G   VF R  GCNL            C +CDT+  +G   T   
Sbjct: 4   NIIEIFSSIQGEGKYVGCRQVFVRLEGCNL-----------DCTYCDTENEIGRHPTCMV 52

Query: 64  RY--------------NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
                           +++ +A L+ +  + G+       +TGGEPLL   VP I+AL +
Sbjct: 53  EMPAGSHELHSYANPLSIETVAALVAQ--VAGDVPHHSLSVTGGEPLLH--VPFIRALKE 108

Query: 110 R-GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG------------GQEL---KLVF 153
           R    I +ETNGT+         CVS     D+K+ G              E+   K V+
Sbjct: 109 RVPLPIFLETNGTLHDALARCIDCVS-YISMDIKLPGVLLHPVWDAHARFLEIARTKDVY 167

Query: 154 PQVNVSPENYIG------------FDFERFSLQPMD----GPFLEENTNLAISYC-FQN- 195
            +V V+ E                       LQP+              LA+      + 
Sbjct: 168 VKVVVAAETREDEVRTAARMVAETAPDVLLILQPVTPYGGCTAPTPARLLALQQIALVHV 227

Query: 196 PKWRLSVQTH 205
           P  R+  QTH
Sbjct: 228 PDVRVIPQTH 237


>gi|260892494|ref|YP_003238591.1| Radical SAM domain protein [Ammonifex degensii KC4]
 gi|260864635|gb|ACX51741.1| Radical SAM domain protein [Ammonifex degensii KC4]
          Length = 251

 Score =  124 bits (313), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 91/254 (35%), Gaps = 65/254 (25%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-----VGIQG 59
            ++EIF ++QGEG + G   +F RF+GCNL            CR+CDT         ++ 
Sbjct: 12  PLREIFSSVQGEGPYVGVRHLFVRFAGCNLT-----------CRYCDTPRDIPATCRVEV 60

Query: 60  TKGGRY--------NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNK 109
             G ++          +++  L+               LTGGEPLL       L+ AL +
Sbjct: 61  VAGRQHFFHLPNPLTPEEVVLLVSNLLRQLRHGA--VALTGGEPLLYPAFLRELLPALRQ 118

Query: 110 RGFEIAVETNGTIE--PPQGIDWICVSPKAGCDLKIKGGQELK----------------- 150
            G  + +ETNGT+     +  D + V      DLK+     LK                 
Sbjct: 119 IGCRVYLETNGTLPYALEEVADLVDV---VAMDLKLPSSTGLKPYWSEHEEFLAKLKGKE 175

Query: 151 -----LVFPQVNVSPENYIGFDFER----FSLQPMDGP---FLEENTNLAI--SYCF-QN 195
                +V  Q         G   E+      LQP+      F      L     +   + 
Sbjct: 176 VILKAVVSRQATREEVERAGELAEKAGAVLVLQPVTTKNPNFRPSGMRLLEMQEWALGKT 235

Query: 196 PKWRLSVQTHKFIG 209
              RL  Q HKF G
Sbjct: 236 SDVRLIPQVHKFCG 249


>gi|297584920|ref|YP_003700700.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus selenitireducens MLS10]
 gi|297143377|gb|ADI00135.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Bacillus selenitireducens MLS10]
          Length = 243

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 92/225 (40%), Gaps = 43/225 (19%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           +   + EIF  T+QGEG  AGR  +F R +GC+             C +CD+ F      
Sbjct: 3   ETIPVLEIFGPTIQGEGMVAGRKTMFVRTAGCDY-----------ACSWCDSAFTWDGSA 51

Query: 61  KGG--RYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVE 117
           K    + N D +   + E+    E    +  ++GG P LL+     I  L ++  ++A+E
Sbjct: 52  KDEIVQMNKDAIWQALNEE---AEGLFSHVTISGGNPALLKNLGSFITLLKEKAIDVALE 108

Query: 118 TNGTI--EPPQGIDWICVSPKAGC----------DLKIKGGQE--------LKLV-FPQV 156
           T G++  +    ID + +SPK             D  +   +E        LK+V F + 
Sbjct: 109 TQGSVWQDWFTTIDDLTISPKPPSSRMETDFGVLDDIMTRLREAGRSSQVSLKVVIFDEE 168

Query: 157 NVSPENYIGFDFER--FSLQP-MDGPFLEENTNLAISYCFQNPKW 198
           +++    +   +    F LQ   D    +E+  L   +     +W
Sbjct: 169 DLAYARRVKTRYPDVPFYLQVGNDDTVTDEDKTL-RDHLMDRYEW 212


>gi|86136125|ref|ZP_01054704.1| radical SAM domain protein [Roseobacter sp. MED193]
 gi|85826999|gb|EAQ47195.1| radical SAM domain protein [Roseobacter sp. MED193]
          Length = 206

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 53/142 (37%), Gaps = 15/142 (10%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
               I EIF  T+QGEG   G   VF R  GC+            +C +CD+    +   
Sbjct: 1   MTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCDF-----------RCNWCDSLHA-VDSE 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
               +       + +              L+GG P +Q   PLI      G+  A ET G
Sbjct: 49  YRHSWAPMTAEAVWDRVRQLSGDRPLTVSLSGGNPAIQDFGPLIAMGRAAGYRFACETQG 108

Query: 121 TIEPP--QGIDWICVSPKAGCD 140
           +I  P    +D + +SPK    
Sbjct: 109 SIARPWFADLDTLVLSPKPPSS 130


>gi|11498053|ref|NP_069277.1| hypothetical protein AF0441 [Archaeoglobus fulgidus DSM 4304]
 gi|2650186|gb|AAB90793.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 225

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 57/241 (23%), Positives = 89/241 (36%), Gaps = 53/241 (21%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           ++ EIF ++QGEG + G   +F RF+GCNL            C +CDT            
Sbjct: 4   NLIEIFESIQGEGFYIGVRQLFVRFAGCNL-----------NCYYCDTPKTSENCLD--L 50

Query: 65  YNVDQLADLIEEQWITGEKEG---RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
                L + +  +++ G  +         TGGEP+LQ     I +L+K      +E+N T
Sbjct: 51  TANRTLKNPVSAEYVQGRIDSSKVHSVCFTGGEPMLQA--EFIASLSKT-HPFYLESNMT 107

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGG-----QEL---------------------KLVFPQ 155
           +         C       DLK++        E+                     K+V P 
Sbjct: 108 LPEKAKKLKFC--DYVAGDLKVREAGLKNYDEVFQKTVKCFKVLRNTRRRKTFCKIVLPD 165

Query: 156 VNVSPEN-----YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              + E       I      F LQP+ G  +E+   L           R+  Q HK++G+
Sbjct: 166 KFDADEVLNSAYEIKNYVFGFVLQPVFGSRVEKILKLQ-KRMIDFADTRVIPQVHKYLGV 224

Query: 211 R 211
           R
Sbjct: 225 R 225


>gi|15679238|ref|NP_276355.1| coenzyme PQQ synthesis protein III [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622338|gb|AAB85716.1| coenzyme PQQ synthesis protein III [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 247

 Score =  124 bits (312), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 16/119 (13%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            I E+F ++QGEG   GR  +F RF+GCNL            C +CDT       + G  
Sbjct: 7   PIVEVFSSIQGEGLLVGRRQIFVRFAGCNL-----------NCSYCDTP-ESRDPSAGRL 54

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
           +   +L ++IE        +     +TGGEPLL  D  + + L +      +ETNG++ 
Sbjct: 55  FTAPELTEIIEGLI---TPDFHSISITGGEPLLYPDF-ITELLEESPHRTLLETNGSLP 109


>gi|163738317|ref|ZP_02145732.1| Radical SAM [Phaeobacter gallaeciensis BS107]
 gi|161388238|gb|EDQ12592.1| Radical SAM [Phaeobacter gallaeciensis BS107]
          Length = 265

 Score =  124 bits (312), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 57/142 (40%), Gaps = 15/142 (10%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
               I EIF  T+QGEG   G   VF R  GC+            +C +CD+    +   
Sbjct: 31  TTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDSLHA-VDSR 78

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
               +      ++ +E       +     L+GG P +Q   PLI    + G+  A ET G
Sbjct: 79  YRDTWVPMATDEVWQEVTRLSGGQPLTVSLSGGNPAIQNFAPLIAQGKEAGYRFACETQG 138

Query: 121 TIEPP--QGIDWICVSPKAGCD 140
           +I  P    +D + +SPK    
Sbjct: 139 SISQPWFAQLDTLVLSPKPPSS 160


>gi|289551435|ref|YP_003472339.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180966|gb|ADC88211.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus lugdunensis
           HKU09-01]
          Length = 238

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 18/175 (10%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   GR  +F R +GC+            +C +CD+ F    G+  
Sbjct: 5   IPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDY-----------RCSWCDSVFTW-DGSAK 52

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121
            +  +    ++ E+    G     +  ++GG P L++    L+          A+ET G+
Sbjct: 53  DQIQLMSATEIYEKLIEIGGDCFDHVTISGGNPALIKGIQDLVDLFETEHIATALETQGS 112

Query: 122 IEPP--QGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFS 172
              P    I+ + +SPK          + L  V  Q          + FD E ++
Sbjct: 113 KFQPWMTQINDLTISPKPPSSSMTPNLEVLDQVIAQCVPQSLNLKVVVFDDEDYA 167


>gi|291443188|ref|ZP_06582578.1| radical SAM domain-containing protein [Streptomyces roseosporus
           NRRL 15998]
 gi|291346135|gb|EFE73039.1| radical SAM domain-containing protein [Streptomyces roseosporus
           NRRL 15998]
          Length = 241

 Score =  123 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 90/239 (37%), Gaps = 57/239 (23%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGG 63
           + EIF  T+QGEG  AGR  VF R  GCNL            C +CDT +    +GT   
Sbjct: 11  VNEIFGPTVQGEGPSAGRQCVFLRLGGCNL-----------SCHWCDTPYTWDWKGTSDE 59

Query: 64  RYNVD--------QLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFE 113
           +   D           +++EE    G       V++GGEPL Q     P+++ L + G  
Sbjct: 60  KTAFDPRKELHNRDAGEVVEELLALGTG---LVVISGGEPLSQQRRLRPVLKGLLEAGVT 116

Query: 114 IAVETNGTIEPPQGIDWIC------VSPKAGCD-------------LKIKGGQELKLVFP 154
           +  ETNGT+ P   I  I       VSPK                  K+    ++   F 
Sbjct: 117 VEFETNGTVVPDDEI--ITPGVRFNVSPKLAHAGDPASKRIVPAALTKLAQTTDVAFKFV 174

Query: 155 QVNVSPENYIGFDFERFSLQPM----DGPFLEENTN----LAISYCFQNPKWRLSVQTH 205
                  + +G     F + P+    +G  +   +     LA         W LS + H
Sbjct: 175 CRTTDDLDEVGTLQADFGISPIWIMPEGKNVAHISQHLSSLADEVV--RRGWNLSTRLH 231


>gi|291547693|emb|CBL20801.1| Organic radical activating enzymes [Ruminococcus sp. SR1/5]
          Length = 149

 Score =  123 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 19/128 (14%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M  Y + E F+++ GEG  AG +A F RF GCNL           QC +CDT +    G 
Sbjct: 1   MSTYQVVEKFVSINGEGRRAGELAAFIRFKGCNL-----------QCSYCDTSWANEPGC 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQA-LNKRGFEIAVET 118
           +  R   +++   I E  +      +   LTGGEPLL+     LI+A L      + +ET
Sbjct: 50  ESERLTEEEILSWIRETGV------KNVTLTGGEPLLRKGMEELIEAILEDPSQRVEIET 103

Query: 119 NGTIEPPQ 126
           NG+++   
Sbjct: 104 NGSVDLKP 111


>gi|57505796|ref|ZP_00371721.1| radical SAM domain protein protein [Campylobacter upsaliensis
           RM3195]
 gi|57015826|gb|EAL52615.1| radical SAM domain protein protein [Campylobacter upsaliensis
           RM3195]
          Length = 247

 Score =  123 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 7/127 (5%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTK 61
            + E FL++QGEG  AG +A+F RF+GCN      G ++ +   +   CDT         
Sbjct: 2   KVVESFLSIQGEGKFAGLLAIFVRFAGCNFNCLGFGVKKQKEGRELVGCDTLRAVFTKEY 61

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ----VDVPLIQALNKRGFEIAVE 117
              Y      +L        +      V+TGGEPLL       +  I+ L +  FE+  E
Sbjct: 62  QNTYENLNAKELFLRVLKMAKDLKPIIVITGGEPLLHHKKSEFLKFIKLLLEAKFEVHFE 121

Query: 118 TNGTIEP 124
           TN +I  
Sbjct: 122 TNASIRV 128


>gi|239939759|ref|ZP_04691696.1| radical SAM family protein [Streptomyces roseosporus NRRL 15998]
 gi|239986242|ref|ZP_04706906.1| radical SAM family protein [Streptomyces roseosporus NRRL 11379]
          Length = 235

 Score =  123 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 90/239 (37%), Gaps = 57/239 (23%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGG 63
           + EIF  T+QGEG  AGR  VF R  GCNL            C +CDT +    +GT   
Sbjct: 5   VNEIFGPTVQGEGPSAGRQCVFLRLGGCNL-----------SCHWCDTPYTWDWKGTSDE 53

Query: 64  RYNVD--------QLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFE 113
           +   D           +++EE    G       V++GGEPL Q     P+++ L + G  
Sbjct: 54  KTAFDPRKELHNRDAGEVVEELLALGTG---LVVISGGEPLSQQRRLRPVLKGLLEAGVT 110

Query: 114 IAVETNGTIEPPQGIDWIC------VSPKAGCD-------------LKIKGGQELKLVFP 154
           +  ETNGT+ P   I  I       VSPK                  K+    ++   F 
Sbjct: 111 VEFETNGTVVPDDEI--ITPGVRFNVSPKLAHAGDPASKRIVPAALTKLAQTTDVAFKFV 168

Query: 155 QVNVSPENYIGFDFERFSLQPM----DGPFLEENTN----LAISYCFQNPKWRLSVQTH 205
                  + +G     F + P+    +G  +   +     LA         W LS + H
Sbjct: 169 CRTTDDLDEVGTLQADFGISPIWIMPEGKNVAHISQHLSSLADEVV--RRGWNLSTRLH 225


>gi|260430571|ref|ZP_05784544.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Citreicella sp. SE45]
 gi|260418600|gb|EEX11857.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Citreicella sp. SE45]
          Length = 235

 Score =  123 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 16/143 (11%)

Query: 1   MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M L  I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++ 
Sbjct: 1   MSL-RIAEIFGPTIQGEGALIGEPTVFVRTGGCDY-----------RCSWCDSLHA-VES 47

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
                +     + + +E       +     L+GG P +Q   P+I      G+  A ET 
Sbjct: 48  RYRDTWAAMSDSAVWDEVLRLSGGQPLTVSLSGGNPAIQDFAPVIARGRAAGYRFACETQ 107

Query: 120 GTIEPP--QGIDWICVSPKAGCD 140
           G++  P    +D + +SPK    
Sbjct: 108 GSVARPWFAELDTLVLSPKPPSS 130


>gi|327198318|ref|YP_004306892.1| QueE [Streptococcus phage Dp-1]
 gi|314912620|gb|ADT64011.1| QueE [Streptococcus phage Dp-1]
          Length = 264

 Score =  123 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 18/166 (10%)

Query: 5   SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
            I EIF  T+QGEG   G+  +F R  GC+             C +CD+ F     T+  
Sbjct: 24  PIMEIFGPTIQGEGMVIGQKTIFIRTGGCDY-----------HCNWCDSAFTWNGTTEPE 72

Query: 64  RYNVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETN 119
                + A  I +      GE+   +  LTGG P L  +    +I  L + GF+  +ET 
Sbjct: 73  YITGKEAASRILKLAFNDKGEQICNHVTLTGGNPALINEPMAKMISILKEHGFKFGLETQ 132

Query: 120 GTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY 163
           GT   E  + +  I +SPK          + L+ +  ++N    ++
Sbjct: 133 GTRFQEWFKEVSDITISPKPPSSGMRTNMKILEAIVDRMNDENLDW 178


>gi|302531820|ref|ZP_07284162.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptomyces
           sp. AA4]
 gi|302440715|gb|EFL12531.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptomyces
           sp. AA4]
          Length = 237

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/144 (34%), Positives = 66/144 (45%), Gaps = 25/144 (17%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + E F  T+QGEG   GR AVF R   CNL            C+ CDT +   +     R
Sbjct: 12  VAERFGPTVQGEGPSIGRRAVFIRLMNCNLT-----------CKNCDTPYTWDR----TR 56

Query: 65  YNVD---QLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
           +++D    +A + +       +     V+TGGEPL+Q      L Q L   G E+ VETN
Sbjct: 57  FDLDAEGTVASISDLLAWVTVQSVDLVVITGGEPLMQQRSLTALAQGLADAGLEVEVETN 116

Query: 120 GTI-EPPQGIDWIC---VSPKAGC 139
           GTI   P  + W+    VSPK   
Sbjct: 117 GTIVPAPDLLAWVTRFNVSPKLSS 140


>gi|289192393|ref|YP_003458334.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938843|gb|ADC69598.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
          Length = 243

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/258 (22%), Positives = 93/258 (36%), Gaps = 72/258 (27%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD----FVGIQGTK 61
           I+EIF ++ GEG + GR  +F RF+GC L            C +CD +    F  ++ T 
Sbjct: 2   IREIFSSIMGEGKYIGRRFIFVRFAGCPL-----------NCVYCDEESKGYFNRVEKTP 50

Query: 62  G-GRYNVDQ---LADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
           G G +   Q   + D+I         +      TGGEPLL       +   L  +G+   
Sbjct: 51  GSGEFETLQKIDIEDIINAIDKLKTPDLFAVSFTGGEPLLYHKQIKEISDILKDKGYRTF 110

Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKG--------------GQELK----------- 150
           +E+NG    P+ + +  +   A  D+K+K                 ELK           
Sbjct: 111 LESNG--MFPEKVFYFDI---ASIDIKLKEHFEYIKDDDYKKLYKNELKTIKKLYNLNSD 165

Query: 151 -----LVFPQVNVSPENYIGFDFERF-----SLQPM---------DGPFLEENTNLAISY 191
                ++  +  V     I  D          +QP+             L E       Y
Sbjct: 166 VYAKVVIMEETKVDDVKIIAKDLSEIGNITLCIQPVTPHGNIKSPSQKKLFEIMEACGEY 225

Query: 192 CFQNPKWRLSVQTHKFIG 209
              N    L++Q HK++G
Sbjct: 226 LKDNVM--LTIQMHKYLG 241


>gi|228995355|ref|ZP_04155040.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus pseudomycoides DSM 12442]
 gi|228764397|gb|EEM13260.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus pseudomycoides DSM 12442]
          Length = 232

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 21/173 (12%)

Query: 7   KEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
            EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G+   + 
Sbjct: 1   MEIFGPTIQGEGMVIGQKTMFIRTAGCDY-----------SCSWCDSAFTW-DGSTKEQI 48

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI-- 122
                 ++  E    G +   +  ++GG P LL+    L+  L + G   A+ET G+   
Sbjct: 49  RQMAPEEIWNELVGIGGENFSHVTISGGNPVLLKNIQFLLTVLKENGIRTAIETQGSKWQ 108

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170
           E    ID + +SPK            L  V  ++     +     +  +DFE 
Sbjct: 109 EWLLQIDEVTISPKPPSSKMKTDFTMLDSVIHKLERKDFSLKVVVFEDYDFEY 161


>gi|158314658|ref|YP_001507166.1| radical SAM domain-containing protein [Frankia sp. EAN1pec]
 gi|158110063|gb|ABW12260.1| Radical SAM domain protein [Frankia sp. EAN1pec]
          Length = 243

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 92/235 (39%), Gaps = 56/235 (23%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           + E F  T QGEG  AG+ A+F R S CNL            C +CD      +     R
Sbjct: 20  VVERFGPTFQGEGPTAGQQALFLRLSACNL-----------SCAWCDEPHTWDR----NR 64

Query: 65  YNVDQLADLIEEQWITG---EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
           ++VD  ++ + ++ + G   +      V+TGGEPLLQ     PL+ AL + G ++ +ETN
Sbjct: 65  FDVDAHSERLSQRTLLGWALDSPVTRVVVTGGEPLLQQAALFPLVAALAQAGRQVEIETN 124

Query: 120 GTIEPPQGIDWI----CVSPKAGCDLKIKGGQELKLVFPQVNVSPE-------------- 161
           GT+ P   +  +     VSPK            ++ + P    +                
Sbjct: 125 GTVAPTAEMVEVVERFTVSPKLSGS----RVAAVRRIVPAALTAFAGCGKAVFKFVISAD 180

Query: 162 ---NYIGFDFERFSLQPM--------DGPFLEENTNLAISYCFQNPKWRLSVQTH 205
              + I     RF L P+        +   L     LA     +   W LS + H
Sbjct: 181 GEIDEIAELEGRFGLSPVWAMPEGTDEPSVLAGMRRLA-EIALER-GWNLSPRLH 233


>gi|152991808|ref|YP_001357529.1| hypothetical protein SUN_0212 [Sulfurovum sp. NBC37-1]
 gi|151423669|dbj|BAF71172.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 252

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 77/185 (41%), Gaps = 21/185 (11%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQG 59
           ++ + E F ++QGEG +AG  + F R  GCNL     G   +        CDT F     
Sbjct: 1   MFYLTEQFFSIQGEGKYAGVPSYFLRTGGCNLSCPGFGATYEVDGEIRYGCDTYFAVDSA 60

Query: 60  TKGGRYNVDQ---LADLIEEQWITGEKEGRYCVLTGGEPLLQVDV----PLIQALNKRGF 112
                  VD    L D ++E++          V+TGGEPL+         ++  L  RG 
Sbjct: 61  YAKSWKKVDDSRILVDRLQEEFTQIGY-APDVVITGGEPLMYHSDSVFYEVVSWLVDRGV 119

Query: 113 EIAVETNGTIEPPQGIDWICVSPKAGC----DLKIKGGQEL--KLVFPQVNVSPENYIGF 166
            I  ETNGTIE    ID+        C     LK+    E   K V PQ   + ++Y   
Sbjct: 120 RITFETNGTIE----IDFDAFPAYKACVFALSLKLANSGEPASKRVIPQALKNLQSYSKE 175

Query: 167 DFERF 171
            F +F
Sbjct: 176 TFLKF 180


>gi|154149121|ref|YP_001405929.1| radical SAM domain-containing protein [Campylobacter hominis ATCC
           BAA-381]
 gi|153805130|gb|ABS52137.1| radical SAM domain protein [Campylobacter hominis ATCC BAA-381]
          Length = 247

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 10/131 (7%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSG-----REQDRLSAQCRFCDTDFVGI 57
           + S+ E F ++QGEG  AGR+AVF RF+GCNL         +  +     R CDT    +
Sbjct: 1   MLSLVESFASIQGEGKFAGRLAVFFRFAGCNLNCAGFNCELKSPKTGEILRGCDTIRA-V 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL----IQALNKRGFE 113
           +        +  ++ L+++     +      V+TGGEPLL    PL    I  + KR FE
Sbjct: 60  KTAHFDYEKISTVSQLLDKIGTNFKNSLPIIVITGGEPLLNYANPLFYEFIDEILKRNFE 119

Query: 114 IAVETNGTIEP 124
           +  ETNGTI  
Sbjct: 120 VHFETNGTIFV 130


>gi|157165265|ref|YP_001466044.1| phosphoribosylaminoimidazole-succinocarboxamide synthase
           [Campylobacter concisus 13826]
 gi|112801208|gb|EAT98552.1| radical SAM domain protein [Campylobacter concisus 13826]
          Length = 251

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/211 (28%), Positives = 89/211 (42%), Gaps = 20/211 (9%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS-----GREQDRLSAQCRFCDTDFVG 56
           K   + E FL++QGEG + GR+AVF RF GCNL            +   +   CD+    
Sbjct: 3   KELELVEAFLSIQGEGAYQGRLAVFLRFLGCNLNCSGFGVKTRSLKTGEELLGCDSIRAV 62

Query: 57  IQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRG 111
            +G     RY+ D++  L++     G ++    VLTGGEPL+         L++ L    
Sbjct: 63  FKGHFHHKRYSTDEILSLVD-GLCKGLEQKPIIVLTGGEPLIWHQNENFINLVRNLL-IN 120

Query: 112 FEIAVETNGTIEPPQGID----WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD 167
           +E+  ETNGTI      D    +       G  L   G  E K +     ++ ++     
Sbjct: 121 YEVHFETNGTILV--DFDKFEIYKNCHFALGVKLANSGVSEQKRINLDAILAIKDNAKSS 178

Query: 168 FERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
           F +F L   D   LEE   L I      P W
Sbjct: 179 FLKFVLSHFDKSELEEI--LYIKNRVNLPVW 207


>gi|152991323|ref|YP_001357045.1| hypothetical protein NIS_1581 [Nitratiruptor sp. SB155-2]
 gi|151423184|dbj|BAF70688.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 252

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 80/212 (37%), Gaps = 25/212 (11%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSG--REQDRLSAQCRFCDTDFVG---- 56
           +  + E F ++QGEG   G  +VF RF GCNL      E          CD+        
Sbjct: 1   MLYLVEDFYSIQGEGKFIGTPSVFFRFGGCNLKCPSFGEYFIQGRIVHGCDSIRAVNREL 60

Query: 57  IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGF 112
            Q         D+L +++    +       + V+TGGEPL+  + P     ++ L + G+
Sbjct: 61  FQSKWKEIGTKDELIEILHSH-VEYLDFKPHIVITGGEPLIYWNDPVFYGFLEYLVEEGY 119

Query: 113 EIAVETNGTIEP-----PQGIDWICVSPKAGCDLKIKGGQEL--KLVFPQVNVSPENYIG 165
            + +ETN TI       P   D I         +K+    E   K V  +   +     G
Sbjct: 120 IVTIETNATIVIDFEKYPAYKDVI-----FAMAVKLANSGEKYEKRVNKKAIEAIAVNTG 174

Query: 166 FDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197
           + F +F+L    G          +    + P+
Sbjct: 175 YSFFKFTLD--RGSVQMRAYEEIVDIVGEYPE 204


>gi|163746924|ref|ZP_02154281.1| Radical SAM [Oceanibulbus indolifex HEL-45]
 gi|161380038|gb|EDQ04450.1| Radical SAM [Oceanibulbus indolifex HEL-45]
          Length = 235

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 78/243 (32%), Gaps = 57/243 (23%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
               I EIF  T+QGEG   G   VF R  GC+            +C +CD+    ++  
Sbjct: 1   MTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCDY-----------RCSWCDSLHA-VESQ 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
               +      D+  +       +     L+GG P +Q   PLI+      +  A ET G
Sbjct: 49  YRHTWAPMSSEDVWRKVRKLSGGQPLTVSLSGGNPAIQDFGPLIKMGKAADYRFACETQG 108

Query: 121 TIEPP--QGIDWICVSPKAGCD-----------------------LKIKGGQELKLVFPQ 155
           +I  P    +D + +SPK                           +KI    E+   + +
Sbjct: 109 SIARPWFADLDTLVLSPKPPSSGEDVDWDAFDACRTIGAKARQQVMKIVIFDEIDYQWAR 168

Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW-------------RLSV 202
              +    I        LQP   P ++  T +          W             R+  
Sbjct: 169 EVHAHHLDIPL-----YLQP-GNPEVDPATPVDPQALADRLGWLTEMAMADSWFAPRILP 222

Query: 203 QTH 205
           Q H
Sbjct: 223 QLH 225


>gi|78043751|ref|YP_359801.1| radical SAM domain-containing protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995866|gb|ABB14765.1| radical SAM domain protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 238

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/255 (25%), Positives = 101/255 (39%), Gaps = 63/255 (24%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD--------F 54
           + +I EIF +LQGEG +AG   +F RFSGCNL            C +CDT+        F
Sbjct: 1   MANIVEIFPSLQGEGLYAGVSTLFIRFSGCNL-----------NCSYCDTEDAREKRERF 49

Query: 55  VGIQGTKG-----GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
              +              ++L +++ E +           LTGGEPLL     L + L K
Sbjct: 50  TVTKEDGSLLEFLNPVTPEKLVEILRENYDFTYFPQLA--LTGGEPLLHASF-LKEFLPK 106

Query: 110 RGF--EIAVETNGTIE-----PPQGIDWICVSPKA-------GCDLKIKGGQEL--KLVF 153
             +  E+ +ETNGT+          +D I    K           L  +  QE   K V+
Sbjct: 107 LSYPGEVLLETNGTLPDKLNEVLNSVDIISQDFKLKPFIAEDCFTLHREFLQEASRKKVY 166

Query: 154 PQVNVSPE----------NYIGFDFERF--SLQPM-----DGPFLEENTNLAISYCFQNP 196
            ++ +SPE          N I     +    LQP+        FL +   +A+   +   
Sbjct: 167 VKMVISPEVQDSEFNGAINEIALVNSKIPLILQPVMPINYSLDFLFQKQKMALKKLW--- 223

Query: 197 KWRLSVQTHKFIGIR 211
             R+  Q HK + ++
Sbjct: 224 DVRIIPQVHKLLQLK 238


>gi|153951290|ref|YP_001397418.1| radical SAM domain-containing protein [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152938736|gb|ABS43477.1| radical SAM domain protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 247

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 19/197 (9%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCR---FCDTDFVGIQGTKG 62
           + E FL++QGEG + G++A+F RF+GCN        ++S   +    CDT          
Sbjct: 3   LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFK 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
             Y      +L++      +      V+TGGEPL+  + P     IQ L K  FEI  E+
Sbjct: 63  ESYETLSTNELLKRVIKLKQGFNPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFES 122

Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
           NG+IE      P        +S K        G ++ K +  +   + +NY    F +F 
Sbjct: 123 NGSIEIDFDRYPFYKECIFALSVKLQNS----GIKKDKRLNFKALKAFKNYAKDSFYKFV 178

Query: 173 LQP--MDGPFLEENTNL 187
           L    +D  FLE N  L
Sbjct: 179 LDANTLDNSFLEINEIL 195


>gi|229002868|ref|ZP_04160744.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus mycoides Rock3-17]
 gi|229008542|ref|ZP_04165969.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus mycoides Rock1-4]
 gi|228752737|gb|EEM02338.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus mycoides Rock1-4]
 gi|228758393|gb|EEM07564.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus mycoides Rock3-17]
          Length = 232

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 21/173 (12%)

Query: 7   KEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
            EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G+   + 
Sbjct: 1   MEIFGPTIQGEGMVIGQKTMFIRTAGCDY-----------SCSWCDSAFTW-DGSTKEQI 48

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI-- 122
                 ++  E    G +   +  ++GG P LL+    L+  L + G   A+ET G+   
Sbjct: 49  RQMAPEEIWNELVEIGGENFSHVTISGGNPVLLKNIQFLLTVLKENGIRTAIETQGSKWQ 108

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170
           E    ID + +SPK            L  +  ++     +     +  +DFE 
Sbjct: 109 EWLLQIDEVTISPKPPSSKMKTDFTMLDSIIHKLVRKDFSLKVVVFEDYDFEY 161


>gi|291533826|emb|CBL06939.1| Organic radical activating enzymes [Megamonas hypermegale ART12/1]
          Length = 249

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 98/254 (38%), Gaps = 64/254 (25%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-------- 57
           + EIF ++QGEG + G   +F R  GCN+            C +CDTD +          
Sbjct: 8   VSEIFSSIQGEGKYVGCRQLFIRLIGCNM-----------DCPYCDTDKLAHSNLVPCVL 56

Query: 58  ---QGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKR 110
              +G +G     N   L D++       ++      +TGGEPLL     + L + L   
Sbjct: 57  EKCEGYEGDLELKNPLDLNDIMPYINYRLQQPHHSISITGGEPLLYPQIILELAKNLKPL 116

Query: 111 GFEIAVETNGTI-----EPPQGIDWICVSPKAGCDLKIKGGQE---------LKLVFPQV 156
              + +ETNGT+     +    ID I +  K   D+     QE          K V+ ++
Sbjct: 117 SIPLFLETNGTLVKQLAQVIDEIDIISMDMKLPSDIGKAYWQEHEEFLKLASKKDVYVKI 176

Query: 157 NVSPENYIGFDFER-------------FSLQPMD--GPFLEENTNLAISY------CFQN 195
            VS E+ +  DFE+               LQP+   G   E      + +        +N
Sbjct: 177 VVSNESTVE-DFEKALSIIKNIDENILLVLQPITPLGGLHEAPPEKMLKWQTRAMQVLKN 235

Query: 196 PKWRLSVQTHKFIG 209
              R+  QTHK + 
Sbjct: 236 --VRVIPQTHKMMN 247


>gi|194337298|ref|YP_002019092.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309775|gb|ACF44475.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 223

 Score =  121 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 85/234 (36%), Gaps = 51/234 (21%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             +I EIF ++QGE   AG    F R +GC              C  CDT +    G K 
Sbjct: 5   TLNISEIFHSIQGESSFAGWPCAFIRLAGC-----------GHGCIGCDTAYAEHDGIKL 53

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
           G        +++ ++ +          +TGGEPLLQ  V  L++ L     ++ +ET G 
Sbjct: 54  G-------IEVVVQRALA--FRAPLIEVTGGEPLLQPAVYSLMRQLCDLEQKVLLETGGF 104

Query: 122 IEPPQG-------IDWICVSPKAGCDLKIKGGQELKL--VFPQVN-----VSPENYIGFD 167
           +   +        ID    S    CD       EL L  V P        +   +   ++
Sbjct: 105 LSVAEVDCRVHKIIDLKPPS-SGVCDQNNPENIELALAAVLPHRQNFEFKIVVASREDYE 163

Query: 168 FERFSLQP---MD----------GPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           + R  LQ    MD          G        LA        + R+ +Q HK+I
Sbjct: 164 WARALLQEHGLMDSFTIMMGVSFGKLDPA--ELAEWMLRDRLRARMQLQLHKYI 215


>gi|86153735|ref|ZP_01071938.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121613080|ref|YP_999885.1| radical SAM domain-containing protein [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167004851|ref|ZP_02270609.1| hypothetical protein Cjejjejuni_00920 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85842696|gb|EAQ59908.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87250333|gb|EAQ73291.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 247

 Score =  121 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 19/197 (9%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCR---FCDTDFVGIQGTKG 62
           + E FL++QGEG + G++A+F RF+GCN        ++S   +    CDT          
Sbjct: 3   LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFK 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
             Y      +L++      +      V+TGGEPL+  + P     IQ L K  FEI  E+
Sbjct: 63  ESYETLNANELLKRVIKLKQDFNPIVVITGGEPLIHYENPEFIKFIQMLLKNKFEIHFES 122

Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
           NG+IE      P        +S K        G ++ K +  +   + +NY    F +F 
Sbjct: 123 NGSIEIDFDRYPFYKECIFALSVKLQNS----GIKKDKRLNFKALKAFKNYAKDSFYKFV 178

Query: 173 LQP--MDGPFLEENTNL 187
           L    +D  FLE N  L
Sbjct: 179 LDANTLDNSFLEINEIL 195


>gi|283955607|ref|ZP_06373100.1| LOW QUALITY PROTEIN: radical SAM domain protein [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283792832|gb|EFC31608.1| LOW QUALITY PROTEIN: radical SAM domain protein [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 247

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 19/197 (9%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCR---FCDTDFVGIQGTKG 62
           + E FL++QGEG + G++A+F RF+GCN        ++S   +    CDT          
Sbjct: 3   LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNNKTLIGCDTMRAVFTKDFK 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
             Y      +L++      +      V+TGGEPL+  + P     IQ L K  FEI  E+
Sbjct: 63  ESYETLNANELLKRVIKLKQGFNPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFES 122

Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
           NG+IE      P        +S K        G ++ K +  +   + +NY    F +F 
Sbjct: 123 NGSIEIDFDRYPFYKECIFALSVKLQNS----GIKKDKRLNFKALKAFKNYAKDSFYKFV 178

Query: 173 LQP--MDGPFLEENTNL 187
           L    +D  FLE N  L
Sbjct: 179 LNANTLDNSFLEINEIL 195


>gi|328885752|emb|CCA58991.1| Queuosine Biosynthesis QueE Radical SAM [Streptomyces venezuelae
           ATCC 10712]
          Length = 238

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 23/144 (15%)

Query: 4   YSIKEIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG--IQGT 60
             + E F  T+QGEG   G  A F R + CNL            C  CDT +     +  
Sbjct: 11  LRVSEKFGGTVQGEGPSTGVPACFIRLALCNL-----------ICSPCDTPYTWDTTRFD 59

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118
                + + + +L+       ++     V+TGGEPL+Q+     L++ L   G  + +ET
Sbjct: 60  LRKEAHYENVEELLA---WALDQPEDLVVVTGGEPLIQMAGLTELVKGLRAAGRTVEIET 116

Query: 119 NGTIEPPQGID----WICVSPKAG 138
           NGTI P + +     +  VSPK  
Sbjct: 117 NGTIAPSEALVAAGPYFNVSPKLS 140


>gi|315638082|ref|ZP_07893267.1| radical SAM domain protein [Campylobacter upsaliensis JV21]
 gi|315481930|gb|EFU72549.1| radical SAM domain protein [Campylobacter upsaliensis JV21]
          Length = 247

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 7/127 (5%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTK 61
            + E FL++QGEG  AGR+AVF RF+ CN      G ++ +   +   CDT         
Sbjct: 2   KVVESFLSIQGEGKFAGRLAVFVRFANCNFNCLGFGVKKQKEGRELVGCDTLRAVFTKEY 61

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ----VDVPLIQALNKRGFEIAVE 117
              Y      +L        +      V+TGGEPLL       +  I+ L +  FE+  E
Sbjct: 62  QNTYENLNAKELFLRVLKMAKDLKPIIVITGGEPLLHHKKSEFLKFIKLLLEAKFEVHFE 121

Query: 118 TNGTIEP 124
           TN +I  
Sbjct: 122 TNASIRV 128


>gi|157414477|ref|YP_001481733.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157385441|gb|ABV51756.1| hypothetical protein C8J_0157 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747120|gb|ADN90390.1| Radical SAM domain protein [Campylobacter jejuni subsp. jejuni M1]
 gi|315931973|gb|EFV10926.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 247

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 19/197 (9%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCR---FCDTDFVGIQGTKG 62
           + E FL++QGEG + G++A+F RF+GCN        ++S   +    CDT          
Sbjct: 3   LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFK 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
             Y      +L++      +      V+TGGEPL+  + P     IQ L K  FEI  E+
Sbjct: 63  ESYETLNANELLKRVIKLKQDFDPIVVITGGEPLIHYENPEFIKFIQMLLKNKFEIHFES 122

Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
           NG+IE      P        +S K        G ++ K +  +   + +NY    F +F 
Sbjct: 123 NGSIEIDFDRYPFYKECIFALSVKLQNS----GIKKDKRLNFKALKAFKNYAKDSFYKFV 178

Query: 173 LQP--MDGPFLEENTNL 187
           L    +D  FLE N  L
Sbjct: 179 LDANTLDNSFLEINEIL 195


>gi|322378511|ref|ZP_08052961.1| hypothetical protein HSUHS1_0174 [Helicobacter suis HS1]
 gi|322380522|ref|ZP_08054704.1| organic radical activating enzyme [Helicobacter suis HS5]
 gi|321147051|gb|EFX41769.1| organic radical activating enzyme [Helicobacter suis HS5]
 gi|321149072|gb|EFX43522.1| hypothetical protein HSUHS1_0174 [Helicobacter suis HS1]
          Length = 246

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 14/145 (9%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGT 60
             + E F +LQGEG   G+ +VF R  GCN      G +    S +   CD+ +      
Sbjct: 3   LPLVETFYSLQGEGSCVGQPSVFIRLGGCNFKCVGFGVKSMIDSKEVVGCDSAYAVYPNA 62

Query: 61  KGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ----VDVPLIQALNKRGFEIA 115
           K     +  +L   +E           + VLTGGEP L     + +  +Q L+ RG  I 
Sbjct: 63  KWSYLKSAQELLTRLEPLIYPSTLP--HIVLTGGEPSLHFNNLILLEALQVLHTRGHTIW 120

Query: 116 VETNGTI----EPPQGIDWICVSPK 136
           VE+NG++    + P       +SPK
Sbjct: 121 VESNGSVFFEFKAPLNTLHFTLSPK 145


>gi|57237168|ref|YP_178180.1| radical SAM domain-containing protein [Campylobacter jejuni RM1221]
 gi|57165972|gb|AAW34751.1| radical SAM domain protein [Campylobacter jejuni RM1221]
 gi|284925453|gb|ADC27805.1| radical SAM domain-containing protein [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315057600|gb|ADT71929.1| Queuosine Biosynthesis QueE Radical SAM [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 247

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 19/197 (9%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCR---FCDTDFVGIQGTKG 62
           + E FL++QGEG + G++A+F RF+GCN        ++S   +    CDT          
Sbjct: 3   LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFK 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
             Y      +L++      +      V+TGGEPL+  + P     IQ L K  FEI  E+
Sbjct: 63  ESYETLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFES 122

Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
           NG+IE      P        +S K        G ++ K +  +   + +NY    F +F 
Sbjct: 123 NGSIEINFDRYPFYKECIFALSVKLQNS----GIKKDKRLNFKALKAFKNYAKDSFYKFV 178

Query: 173 LQP--MDGPFLEENTNL 187
           L    +D  FLE N  L
Sbjct: 179 LDANTLDNSFLEINEIL 195


>gi|86151465|ref|ZP_01069680.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315123765|ref|YP_004065769.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841812|gb|EAQ59059.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315017487|gb|ADT65580.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 247

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 85/205 (41%), Gaps = 20/205 (9%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCR---FCDTDFVGIQGTKG 62
           + E FL++QGEG + G++A+F RF+GCN        ++S   +    CDT          
Sbjct: 3   LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFK 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
             Y      +L++      +      V+TGGEPL+  + P     IQ L K  FEI  E+
Sbjct: 63  ESYETLNANELLKRVIKLKQDFNPIVVITGGEPLIHYENPEFIKFIQMLLKNKFEIHFES 122

Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
           NG+IE      P        +S K        G ++ K +  +   + +NY    F +F 
Sbjct: 123 NGSIEIDFDRYPFYKECIFALSVKLQNS----GIKKDKRLNFKALKAFKNYAKDSFYKFV 178

Query: 173 LQPMDGPFLEENTNLAISYCFQNPK 197
           L   D   L+ +         + P 
Sbjct: 179 L---DANTLDNSLLEINEILKEAPN 200


>gi|86149669|ref|ZP_01067899.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88597314|ref|ZP_01100549.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218561841|ref|YP_002343620.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85839937|gb|EAQ57196.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190375|gb|EAQ94349.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112359547|emb|CAL34331.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|315927801|gb|EFV07127.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315928774|gb|EFV08047.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 247

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 19/197 (9%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCR---FCDTDFVGIQGTKG 62
           + E FL++QGEG + G++A+F RF+GCN        ++S   +    CDT          
Sbjct: 3   LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFK 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
             Y      +L++      +      V+TGGEPL+  + P     IQ L K  FEI  E+
Sbjct: 63  ESYETLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFES 122

Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
           NG+IE      P        +S K        G ++ K +  +   + +NY    F +F 
Sbjct: 123 NGSIEIDFDRYPFYKECIFALSVKLQNS----GIKKDKRLNFKALKAFKNYAKDSFYKFV 178

Query: 173 LQP--MDGPFLEENTNL 187
           L    +D  FLE N  L
Sbjct: 179 LDANTLDNSFLEINEIL 195


>gi|226945710|ref|YP_002800783.1| Radical SAM protein [Azotobacter vinelandii DJ]
 gi|226720637|gb|ACO79808.1| Radical SAM protein [Azotobacter vinelandii DJ]
          Length = 193

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 71/212 (33%), Gaps = 51/212 (24%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
              VF R +GC L           +C +CDT +     + G    +  + + +       
Sbjct: 1   MPTVFVRLTGCPL-----------RCGYCDTAYAF---SGGAVLPLSVILERV------A 40

Query: 82  EKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140
               RY  +TGGEPL Q + + L++ L   G+E+++ET+G  +       +        D
Sbjct: 41  SYGPRYVCVTGGEPLAQPNSIELLRLLCDAGYEVSLETSGAFDISA----VDCRVSRVLD 96

Query: 141 LKIKGGQEL-----------------KLVFPQVN-----VSPENYIGFDFE--RFSLQPM 176
           LK     E+                 K V          VS       D         P 
Sbjct: 97  LKTPDSGEVARNRYANMTLLTRNDQMKFVLCSRQDYEWAVSKLIEYRLDERVGEVLFSPS 156

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
            G    E   LA      N   RL +Q HK +
Sbjct: 157 HGQL--EGRELADWIVADNLPVRLQLQLHKIL 186


>gi|17986377|ref|NP_539011.1| radical SAM domain protein ExsD [Brucella melitensis bv. 1 str.
           16M]
 gi|17981967|gb|AAL51275.1| exsd protein [Brucella melitensis bv. 1 str. 16M]
          Length = 243

 Score =  120 bits (303), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 59/166 (35%), Gaps = 15/166 (9%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             I EIF  T+QGEG   G   VF R  GC+               +CD     ++    
Sbjct: 7   IRISEIFGPTIQGEGVLIGEPTVFVRTGGCDYRWA-----------WCDNLHA-VESRFR 54

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
             +    +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++
Sbjct: 55  HEWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSV 114

Query: 123 --EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
             +    +D + +SPK            L          P   + F
Sbjct: 115 AKDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 160


>gi|222445352|ref|ZP_03607867.1| hypothetical protein METSMIALI_00980 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350087|ref|ZP_05975504.1| coenzyme PQQ synthesis protein III [Methanobrevibacter smithii DSM
           2374]
 gi|222434917|gb|EEE42082.1| hypothetical protein METSMIALI_00980 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860873|gb|EFC93171.1| coenzyme PQQ synthesis protein III [Methanobrevibacter smithii DSM
           2374]
          Length = 232

 Score =  120 bits (303), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 96/252 (38%), Gaps = 61/252 (24%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK   I EIF + QGEG   G+  +F RF+GCNL            C +CDT+    + +
Sbjct: 1   MKA-PIIEIFSSFQGEGLFIGQRQIFVRFAGCNL-----------NCNYCDTNDSKSEKS 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETN 119
            G    VD++   IE+       +      TGGEP L      I  + ++   +I +ETN
Sbjct: 49  -GKLMTVDEVLAAIEK---VRTPDCHVISFTGGEPSLYP--EFINEVARQTDLKILLETN 102

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKG-----------GQELKLV----------FPQVNV 158
           GT+  P+ ID+I        D+K+               E+K V          + +V V
Sbjct: 103 GTL--PEKIDFIEKLDIVSLDIKLPEHFNNDFDKDIFINEIKSVNLLMAKSIMLYCKVVV 160

Query: 159 SP---ENYIGFDFERFS--------LQPMDGPFLE------ENTNLAI--SYCFQNPKWR 199
            P    N I    E+ S        LQ +  P          N+ L        Q  +  
Sbjct: 161 LPSTKTNLIQEVMEKLSNNISSKNKLQIIIQPSSPLEDWGNSNSKLFEFSEIVGQYFEVS 220

Query: 200 LSVQTHKFIGIR 211
              Q HK + I 
Sbjct: 221 TIPQVHKILNIE 232


>gi|148643115|ref|YP_001273628.1| coenzyme PQQ synthesis protein [Methanobrevibacter smithii ATCC
           35061]
 gi|148552132|gb|ABQ87260.1| coenzyme PQQ synthesis protein, SAM family [Methanobrevibacter
           smithii ATCC 35061]
          Length = 232

 Score =  120 bits (303), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 94/252 (37%), Gaps = 61/252 (24%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK   I EIF + QGEG   G+  +F RF+GCNL            C +CDT+    + +
Sbjct: 1   MKA-PIIEIFSSFQGEGLFIGQRQIFVRFAGCNL-----------NCSYCDTNDSKSEKS 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETN 119
            G    VD +   IE        +      TGGEP L      I  + ++   +I +ETN
Sbjct: 49  -GKLMTVDDVLAAIEN---VRTPDCHVISFTGGEPSLYP--EFINEVARQTDLKILLETN 102

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKG-----------GQELKLV----------FPQVNV 158
           GT+  P+ ID+I        D+K+               E+K V          + +V V
Sbjct: 103 GTL--PEKIDFIEKLDIVSLDIKLPEHFNNDFNEDIFINEIKSVNLLMAKSIMLYCKVVV 160

Query: 159 SP---ENYIGFDFERFS--------LQPMDGPFLE------ENTNLAI--SYCFQNPKWR 199
            P    N I    E+ S        LQ +  P          N+ L        Q  +  
Sbjct: 161 LPSTKTNLIQEVMEKLSNNISSKNKLQIIIQPSSPLEDWGNSNSKLFEFSEIVGQYFEVS 220

Query: 200 LSVQTHKFIGIR 211
              Q HK + I 
Sbjct: 221 TIPQVHKILNIE 232


>gi|297617391|ref|YP_003702550.1| radical SAM protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145228|gb|ADI01985.1| Radical SAM domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 243

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 92/253 (36%), Gaps = 58/253 (22%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-------- 52
           MK Y + EI  ++QGEG  AG   +F RF GCNL           +C +CDT        
Sbjct: 1   MKAY-LSEITESIQGEGTLAGSRQIFLRFCGCNL-----------RCPYCDTVGSLSKTP 48

Query: 53  --DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALN 108
                   G+K           + +    T   + R+  LTGGEPLL  D    L   L 
Sbjct: 49  SCKIFLKPGSKNDFREYANPLSISDVVKATANFDTRWVSLTGGEPLLWADYLKRLAPILV 108

Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL---------------VF 153
            +G+ + +ETNGT+     +D +  +     D K+     + L               V+
Sbjct: 109 SKGYRMLLETNGTL-VENLVDILEFTAVISMDFKLPSAIGIDLFPVHKRFLELAACRPVY 167

Query: 154 PQVNVSPENY---IGFDFERFS---------LQPMDGPFLEENTN------LAISYCFQN 195
            +V V+P      IG      +         LQP+     +          L +      
Sbjct: 168 VKVVVTPSTEPWEIGEVARIIAGVDATIPLVLQPVSLVTSQVAVQAEKLFDLQLDALKHL 227

Query: 196 PKWRLSVQTHKFI 208
              R+  Q HK++
Sbjct: 228 EDVRVIPQIHKYL 240


>gi|313673522|ref|YP_004051633.1| radical sam domain protein [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940278|gb|ADR19470.1| Radical SAM domain protein [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 237

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 59/249 (23%), Positives = 91/249 (36%), Gaps = 66/249 (26%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK---- 61
           IKE+F ++QGEG + G + +F RFSGC           S  C+ CDTD+           
Sbjct: 12  IKEVFTSIQGEGKYVGALQLFVRFSGC-----------SIGCKGCDTDYSFTDSFDFNGT 60

Query: 62  ---GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAV 116
                    ++LA +I +             +TGGEPLLQ D    LI  L   G+ I +
Sbjct: 61  SVLSNPIKPERLACIIYDHI--KPNSIHSISITGGEPLLQKDFLKELIFYLKGYGYRIFL 118

Query: 117 ETNGTI-----EPPQGIDWICVSPKAGCDLKIKGG-QELKLVFPQVNVSPENYIGFDFE- 169
           ET+G       E    +D I +  K G    ++    E++ +  +  +  + YI    + 
Sbjct: 119 ETSGFFIDRLNEVGDMVDIISLDFKLGESFGVEFSLDEIRKI--KDEIKNKIYIKIVIKN 176

Query: 170 --------------------RFSLQPMDGPFLEENTNLAISYCFQN-------PKWRLSV 202
                                F L   D     +     + Y + N       P      
Sbjct: 177 NLDFVVGRKILDGLALLNKTEFYLHFYDNCI--KINQGIMDYFYSNGVDVFYVP------ 228

Query: 203 QTHKFIGIR 211
           Q HK + I+
Sbjct: 229 QLHKLLEIK 237


>gi|149194883|ref|ZP_01871977.1| hypothetical protein CMTB2_08312 [Caminibacter mediatlanticus TB-2]
 gi|149135042|gb|EDM23524.1| hypothetical protein CMTB2_08312 [Caminibacter mediatlanticus TB-2]
          Length = 232

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 90/223 (40%), Gaps = 44/223 (19%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           L  I EIF ++QGEG ++G  ++F R  GCNL      ++       CD+ +   +  K 
Sbjct: 5   LLPISEIFYSIQGEGKYSGTPSIFVRVGGCNLTCPGFGNKG------CDSYYAVDKSYKN 58

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNG 120
              N+    + I++++    K   + V+TGGEP L      PLI+  +    EI +ETN 
Sbjct: 59  EWENLS--IEEIKKEFSKYLKFNPHLVITGGEPTLYYEKLYPLIEWFSG---EITIETNA 113

Query: 121 T--IEPPQGIDWICVSPKAGCDLKIKGGQE----------------------LKLVFPQV 156
           T  I+  +   +  V+      +K+    E                       K V  + 
Sbjct: 114 TIFIDFEKCPKYKDVT--FAMSVKLSNSGEEYKKRVNKKAILNISKNAKKSFFKFVIDRD 171

Query: 157 NVSPENYI--GFDFERFSLQPM--DGPFLEENTNLAISYCFQN 195
                  I  G + E + + P+  +   LE+N      +C +N
Sbjct: 172 LKEEIEDITEGINLEIYCM-PLGANREELEKNAPFVFDFCLKN 213


>gi|255321816|ref|ZP_05362966.1| FO synthase subunit 2 2 [Campylobacter showae RM3277]
 gi|255300920|gb|EET80187.1| FO synthase subunit 2 2 [Campylobacter showae RM3277]
          Length = 254

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 13/159 (8%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSG-----REQDRLSAQCRFCDTDFV 55
           M L ++ E FL++QGEG  +GR+A+F RF+GCNL            +       CDT   
Sbjct: 1   MSL-NLVESFLSIQGEGASSGRLAIFLRFAGCNLNCAGFGVRTVSPKTGETLTGCDTIRA 59

Query: 56  GIQG--TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALN---K 109
              G  +       D+L  +I +      +     V+TGGEPLL   +  L+  LN    
Sbjct: 60  VFTGHFSYQKITRADELIKII-QNLSANLRRKPIVVITGGEPLLHHKNQILLDFLNFATS 118

Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
            G+E   ETNGTIE   G   I    +    +K++   E
Sbjct: 119 EGYEAHFETNGTIEVDFGKFEIYKKCRFAVSVKLENSGE 157


>gi|254512582|ref|ZP_05124648.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Rhodobacteraceae bacterium KLH11]
 gi|221532581|gb|EEE35576.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Rhodobacteraceae bacterium KLH11]
          Length = 233

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 55/142 (38%), Gaps = 15/142 (10%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
               I EIF  T+QGEG   G+  VF R  GC+            +C +CD+    +  T
Sbjct: 1   MTLRIAEIFGPTVQGEGALIGQPTVFVRTGGCDF-----------RCSWCDSLHA-VDST 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
               +      D+  E             L+GG P +Q   PLI      G+  A ET G
Sbjct: 49  FRQSWKTMSTRDVWTEIQRLSGGRPLTVSLSGGNPAIQDFGPLIGYGLDAGYAFACETQG 108

Query: 121 TIEPPQGIDW--ICVSPKAGCD 140
           +I  P   D   + +SPK    
Sbjct: 109 SIAKPWFADLAMLVLSPKPPSS 130


>gi|323701737|ref|ZP_08113408.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
 gi|323533273|gb|EGB23141.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
          Length = 247

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/257 (23%), Positives = 88/257 (34%), Gaps = 68/257 (26%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD------F 54
           M +  ++EIF ++QGEG + G   VF RF+GCN W           C +CDT        
Sbjct: 1   MPVAYLQEIFSSVQGEGPYVGCRQVFIRFAGCN-WC----------CAYCDTPTEPQPAT 49

Query: 55  VGIQGTKGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLI 104
             ++ + G R            Q+A++I + +           LTGGEPLL  +    LI
Sbjct: 50  CVVEKSPGYRDFVNLANPMTPGQVAEIIRQYYNLSWHHS--VSLTGGEPLLHTEYIKDLI 107

Query: 105 QALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
           + L      I +ETNGT+         GID I +  K           +L   F +V   
Sbjct: 108 KHLPSTRRGIFLETNGTLPDRLTEVITGIDIISMDVKLSSATGTPTPWDLHRHFIKVARQ 167

Query: 160 PENYIGF----------------------DFERFSLQPMDGPFLEEN---------TNLA 188
            E Y+                              LQP+                    A
Sbjct: 168 RELYVKIVVTAETKVEELQKAGELLQELAPQAVLILQPVTPNCGVIAPPVSRVLYLQEQA 227

Query: 189 ISYCFQNPKWRLSVQTH 205
           +         R+  QTH
Sbjct: 228 LKIIK---NVRVIPQTH 241


>gi|148926329|ref|ZP_01810013.1| hypothetical protein Cj8486_0156c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145844721|gb|EDK21826.1| hypothetical protein Cj8486_0156c [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 247

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 19/197 (9%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCR---FCDTDFVGIQGTKG 62
           + E FL++QGEG + G++A+F RF+GCN        ++S   +    CDT          
Sbjct: 3   LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFK 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
             Y      +L++      +      V+TGGEPL+  + P     IQ L K  FEI  E+
Sbjct: 63  ESYKTLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFES 122

Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
           NG+IE      P        +S K        G ++ K +  +   + +NY    F +F 
Sbjct: 123 NGSIEIDFDRYPFYKECIFALSVKLQNS----GIKKDKRLNFKALKAFKNYAKDSFYKFV 178

Query: 173 LQP--MDGPFLEENTNL 187
           L    +D  FLE N  L
Sbjct: 179 LDANTLDNSFLEINEIL 195


>gi|145554191|gb|ABP68894.1| unknown [Bacillus sp. PL-12]
          Length = 258

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 16/155 (10%)

Query: 4   YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             + EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G+  
Sbjct: 20  IPVMEIFGPTIQGEGMVIGQKTMFVRTAGCDY-----------SCAWCDSSFTW-DGSGK 67

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
                    ++  E    G     Y  ++GG P L  ++  L++ L +    I +ET G+
Sbjct: 68  DLVRQMDADEVWRELKALGGDGFTYVTISGGNPALIKNLSGLVELLKENQISICLETQGS 127

Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
              +    ID + +SPK          + L  +  
Sbjct: 128 KWQDWFLEIDALTLSPKPPSSGMETDFEVLDQIVE 162


>gi|254457594|ref|ZP_05071022.1| radical SAM domain protein [Campylobacterales bacterium GD 1]
 gi|207086386|gb|EDZ63670.1| radical SAM domain protein [Campylobacterales bacterium GD 1]
          Length = 253

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 10/132 (7%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS----GREQDRLSAQCRFCDTDFVGIQ 58
           +  + E F ++QGEG + G  ++F RF GCN+        E+     +   CDT +   +
Sbjct: 1   MLYLVEHFYSIQGEGRYTGVPSLFFRFGGCNMKCEGFGCEEEASDGTKVLGCDTVYAVNK 60

Query: 59  GTKGGRYNVDQLADLIEEQWITGEKEGRYC--VLTGGEPLLQVD----VPLIQALNKRGF 112
                 ++  Q    +       E   R    VLTGGEPL+  +    V  ++ L++ G 
Sbjct: 61  EHFSFNWSPIQKTQELLNVLDLYELPQRPVDIVLTGGEPLIYANEGIFVEFLEKLHEEGH 120

Query: 113 EIAVETNGTIEP 124
           +I  ETNG+I  
Sbjct: 121 KITFETNGSIAV 132


>gi|229099948|ref|ZP_04230870.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus Rock3-29]
 gi|228683493|gb|EEL37449.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus Rock3-29]
          Length = 233

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 16/168 (9%)

Query: 8   EIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
           EIF  T+QGEG   G+  +F R +GC+             C +CD+ F    G+   +  
Sbjct: 3   EIFGPTIQGEGMVIGQKTMFIRTAGCDY-----------SCSWCDSAFTW-DGSAKEQVR 50

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--E 123
                ++  E    G +   +  ++GG P LL+    L+  L + G   A+ET G+   E
Sbjct: 51  QMAPEEIWNELVEIGGENFSHVTISGGNPVLLKNIQFLLTVLKENGIRTAIETQGSKWQE 110

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
               I+ + +SPK            L  V  ++     +     FE +
Sbjct: 111 WLLQIEEVTISPKPPSSKMKTDFTMLDSVIHKLERKDFSLKVVVFEEY 158


>gi|222824418|ref|YP_002575992.1| radical SAM domain protein [Campylobacter lari RM2100]
 gi|222539639|gb|ACM64740.1| radical SAM domain protein [Campylobacter lari RM2100]
          Length = 249

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/195 (27%), Positives = 84/195 (43%), Gaps = 20/195 (10%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTKG 62
           + E FL++QGEG ++G +A+F RF+GCN      G ++++ S     CDT          
Sbjct: 3   VVETFLSIQGEGKYSGNLAIFVRFAGCNFNCVGFGVKKEKDSKILLGCDTIRAVFTKEFK 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL----QVDVPLIQALNKRGFEIAVET 118
             Y       L +E            V+TGGEPLL    +  +  I  L +  F +  ET
Sbjct: 63  TCYKTYTSVKLFDEVLKLANSRKAIVVITGGEPLLNYQNKDFLCFINLLLENDFMVHFET 122

Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
           N +IE      P     +  +    G  L   G ++ K +  +   + ++Y    F +F 
Sbjct: 123 NASIEIDFEKYPLYKKCYFAL----GVKLSNSGVKKEKRINEKALKAFKHYAKDSFYKFV 178

Query: 173 LQPMDGPFLEENTNL 187
           L   D  FL+E+  L
Sbjct: 179 L---DKDFLQESKAL 190


>gi|255658308|ref|ZP_05403717.1| radical SAM domain protein [Mitsuokella multacida DSM 20544]
 gi|260849626|gb|EEX69633.1| radical SAM domain protein [Mitsuokella multacida DSM 20544]
          Length = 251

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 94/257 (36%), Gaps = 66/257 (25%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-------FVGI 57
           ++ EIF ++QGEG + G   VF R  GCNL            C +CDT+          +
Sbjct: 7   NLIEIFSSIQGEGKYVGCRQVFVRLEGCNL-----------DCSYCDTENKPGSHPACQV 55

Query: 58  QGTKGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQAL 107
           +   G R            + A +I       E        TGGEPLL       ++  L
Sbjct: 56  ETAAGSRTFATIKNPMTASETAAVIANL--LREVPHEAVSFTGGEPLLHAAFIRAVVLQL 113

Query: 108 NKRG--FEIAVETNGTI-----EPPQGIDWICVSPKAGCDLKIKGGQ------EL---KL 151
              G   ++ +ETNGT+           D I +  K    +     +      EL   K 
Sbjct: 114 RALGQPCKVFLETNGTLYRELASILDITDIISMDIKLPSIVSRPQWEAHARFLELARTKD 173

Query: 152 VFPQVNVSPENYIGFDFER-------------FSLQPMDG-----PFLEENTNLAISYCF 193
           ++ ++ VS E     +FE+             F +QP+           E      S+  
Sbjct: 174 LYVKLVVSAETT-KEEFEKSVALLEEQAPDALFIIQPVTPYGGCKAASPEKILACQSHAL 232

Query: 194 QNPK-WRLSVQTHKFIG 209
           ++ K  R+  QTHK IG
Sbjct: 233 KHLKDVRVIPQTHKMIG 249


>gi|15669841|ref|NP_248655.1| coenzyme PQQ synthesis protein III [Methanocaldococcus jannaschii
           DSM 2661]
 gi|41688758|sp|Q59039|Y1645_METJA RecName: Full=Uncharacterized protein MJ1645
 gi|1592229|gb|AAB99666.1| coenzyme PQQ synthesis protein III isolog (Haemophilus influenzae}
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 243

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/258 (22%), Positives = 94/258 (36%), Gaps = 72/258 (27%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD----FVGIQGTK 61
           I+EIF ++ GEG + GR  +F RF+GC L            C +CD +    F  ++   
Sbjct: 2   IREIFNSIMGEGKYIGRRFIFVRFAGCPL-----------NCVYCDEESKGYFNRVEKIP 50

Query: 62  G-GRYNV---DQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
           G G +      ++ D+I         +      TGGEPLL       + + L  +G+   
Sbjct: 51  GSGEFETLQKMEIEDIINAIDKLKTPDLFAVSFTGGEPLLYHKQIKEIAEILKDKGYRTF 110

Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKG--------------GQELK----------- 150
           +E+NG    P+ I +  +   A  D+K+K                 ELK           
Sbjct: 111 LESNG--MFPERIFYFDI---ASIDIKLKEHFEYIKDEDYEKLYKNELKTIKKLYNLNSD 165

Query: 151 -----LVFPQVNVSPENYIGFDFE-----RFSLQPM---------DGPFLEENTNLAISY 191
                ++  + N+     I  D          +QP+             L E       Y
Sbjct: 166 IYAKVVIMEETNIEDVKIIAKDLSDIGNITLCIQPVTPHGNIKSPSQRKLFEIMEACGEY 225

Query: 192 CFQNPKWRLSVQTHKFIG 209
              N    L++Q HK++G
Sbjct: 226 LKDNVM--LTIQMHKYLG 241


>gi|283955402|ref|ZP_06372901.1| hypothetical protein C414_000450084 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793162|gb|EFC31932.1| hypothetical protein C414_000450084 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 254

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 7/126 (5%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCR---FCDTDFVGIQGTKG 62
           + E FL++QGEG ++G++A+F RF+GCN        ++    +    CDT          
Sbjct: 3   LVESFLSIQGEGKYSGKLAIFMRFAGCNFNCLGFNVKILKNDKILTGCDTIRAVFTKDFK 62

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
             Y      +L++      +      V+TGGEPL+  + P     IQ L K  FEI  E+
Sbjct: 63  ENYETLNANELLKRVIKLKQNFDPIIVITGGEPLIHYENPEFINFIQMLLKNKFEIHFES 122

Query: 119 NGTIEP 124
           NG+IE 
Sbjct: 123 NGSIEI 128


>gi|189424905|ref|YP_001952082.1| radical SAM protein [Geobacter lovleyi SZ]
 gi|189421164|gb|ACD95562.1| Radical SAM domain protein [Geobacter lovleyi SZ]
          Length = 254

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 70/159 (44%), Gaps = 32/159 (20%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-----VGIQG 59
            + EIF +LQGEG  AG   +F RF GCNL            C FCDTDF       ++ 
Sbjct: 12  PLVEIFSSLQGEGVLAGYRQIFVRFPGCNL-----------DCSFCDTDFEAQTACRVET 60

Query: 60  TKGG--------RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111
           T G           +++ L  +I               +TGGEP+L  D+ L + L +  
Sbjct: 61  TPGSGQFQELAQPVSLETLLGIITRWCKQLPNAHHSISITGGEPMLHADL-LARWLPELN 119

Query: 112 --FEIAVETNGTIE--PPQGIDWICVSPKAGCDLKIKGG 146
               I +ETNGT+    P+ I+ + V      D+K+ G 
Sbjct: 120 ILLPIHLETNGTLPEALPRLIEHLDV---ISMDIKLPGS 155


>gi|118580205|ref|YP_901455.1| radical SAM domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118502915|gb|ABK99397.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379]
          Length = 249

 Score =  118 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 62/259 (23%), Positives = 95/259 (36%), Gaps = 63/259 (24%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-----VG 56
           +   I EIF ++QGEG  AGR  +F R + CNL           +C +CDT F       
Sbjct: 3   ESLPIAEIFSSIQGEGYLAGRRQIFIRLTRCNL-----------ECSYCDTGFGEGESCL 51

Query: 57  IQGTKGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL- 107
           ++ + G            +D+L D++        +      LTGGEPLL   + L   L 
Sbjct: 52  VENSPGSNVFEHFPRAVGLDRLMDILNAWTWALPRAHHSISLTGGEPLLFAPL-LSDWLP 110

Query: 108 NKRG-FEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG----GQEL------------- 149
             RG   + +ETNGT+    G   I +      D+K+      G EL             
Sbjct: 111 RLRGILPVHLETNGTLPIELGR-IIRLVDYVSMDMKLPSTAACGGELWDTHRRFLETARG 169

Query: 150 -----KLVF-PQVNVSPENYIGFDFERF------SLQPMDGPFL------EENTNLAISY 191
                K+V   Q + +    +     +        LQP+  P            +L    
Sbjct: 170 KNVSVKIVVGEQSDAAEIEQVCRIIAQIRPDTPLFLQPLSLPDSHCGISAAHLLHLQALA 229

Query: 192 CFQNPKWRLSVQTHKFIGI 210
             +    R+  Q HK +G+
Sbjct: 230 AARLSDVRVIPQMHKLMGV 248


>gi|301167425|emb|CBW27007.1| putative radical SAM domain protein [Bacteriovorax marinus SJ]
          Length = 233

 Score =  118 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 92/245 (37%), Gaps = 57/245 (23%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK + I  I+   +GEG H G   +F RF GC           +  C  CD+        
Sbjct: 1   MKSFLINSIYPATEGEGVHIGTPQIFVRFQGC-----------AIGCLNCDSKDTWD--F 47

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAV 116
            G  + +D++   IE+    G +  +   +TGG+PL          L+  L +RG+ I +
Sbjct: 48  TGRNWTLDEVLGAIED---AGGERIKRVSITGGDPLHPSHTEQVSLLVSTLKERGYFINI 104

Query: 117 ETNGTI---EPPQGIDWICVS---PKAGCDLKIKGGQELKLVFP---QVNVSPENYIGFD 167
           E  GT    E    ID+I      P  G   +++   +L   +P   Q+    E    F+
Sbjct: 105 EAAGTRVVDEIFNKIDFISFDFKTPSTGVKTRVQNLNKLIQNYPNKFQIKAVVETREDFE 164

Query: 168 FERFSLQPMDGPFLEENTNLAISYCF--------QNP--------KW--------RLSVQ 203
                   +    L  N +L+  +C         + P        KW        R+  Q
Sbjct: 165 ATL----DIYNELLSMNESLSFPWCLTPSYNLNEEFPLERFRNVIKWNEEGGSIFRVIGQ 220

Query: 204 THKFI 208
            HK++
Sbjct: 221 QHKWL 225


>gi|119715336|ref|YP_922301.1| radical SAM domain-containing protein [Nocardioides sp. JS614]
 gi|119535997|gb|ABL80614.1| Radical SAM domain protein [Nocardioides sp. JS614]
          Length = 246

 Score =  118 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 73/209 (34%), Gaps = 33/209 (15%)

Query: 6   IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           I EIF  TLQGEG  AG+ A F R   CNL            C +CDT +     ++   
Sbjct: 22  ISEIFGPTLQGEGPSAGKSAAFVRLGACNL-----------ACVWCDTSYTW-DSSRYDL 69

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTI 122
            +        E             V+TGGEP LQ      L +A+ + G  + +ET+G++
Sbjct: 70  ASELVAKPTAEVADKALSFGVPLVVITGGEPALQAVEAARLAEAVTRSGSAVELETSGSL 129

Query: 123 EPPQGID---WICVSPKAGCDLKIKGGQ------ELKLVFPQ-----VNVSPENYIGFDF 168
                 D    I VSPK          +      E   V P      V  SPE     D 
Sbjct: 130 PLGPLADAVRLIVVSPKLANAGGRPQARLRWPVLEAISVLPHSVLKFVVASPEELAEVDE 189

Query: 169 ERFSLQ--PMDGPFLEENTNLAISYCFQN 195
               LQ  P     + E T          
Sbjct: 190 ITSRLQTKPERVWIMPEGTER--ETVLAR 216


>gi|238018973|ref|ZP_04599399.1| hypothetical protein VEIDISOL_00833 [Veillonella dispar ATCC 17748]
 gi|237864457|gb|EEP65747.1| hypothetical protein VEIDISOL_00833 [Veillonella dispar ATCC 17748]
          Length = 247

 Score =  118 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 85/257 (33%), Gaps = 74/257 (28%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           ++ EIF ++ GEG   G +  F R   CN            +C +CDT +     +    
Sbjct: 2   NVIEIFASIDGEGSRQGLLTTFLRLHDCN-----------IRCSYCDTTYSYGIDSTFTD 50

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRG----------- 111
             V ++AD IE              +TGGEPLLQ    V LI  LN+R            
Sbjct: 51  MTVREVADAIESLG------NHRITITGGEPLLQEAAVVELIDELNRRKSAKLEDEPCTD 104

Query: 112 ----------------------FEIAVETNGTIEPPQGID--WICVSPKAGCDLKIKGGQ 147
                                 ++  +ETNGTI P    +  W     K    L  K   
Sbjct: 105 IKSTTGINVSVDAQDVLDSESLYDFNIETNGTIIPSFHRENVWFTYDYKTPSSLAEKSMN 164

Query: 148 --------E---LKLV---FPQVNVSPENYIGFDFE-RFSLQPMDGPFLEENTNLAISYC 192
                   E   +K V      ++        +  + +  + P+ G          I Y 
Sbjct: 165 LDIFKVSREQDLIKFVVGSVEDLDCMRHMINQYPTKAQIYVSPVWGKIEAAA---IIDYM 221

Query: 193 FQNP--KWRLSVQTHKF 207
            ++     R  +Q HKF
Sbjct: 222 NEHNLQNVRFQLQIHKF 238


>gi|317473656|ref|ZP_07932945.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA]
 gi|316898946|gb|EFV20971.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA]
          Length = 173

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 19/126 (15%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M+++ I E F+++ GEG  AGR+++F R  GCNL            C +CDT +   +  
Sbjct: 1   MEVFKIAESFVSINGEGKKAGRLSMFIRLRGCNL-----------NCSYCDTKWAISKKG 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI-QALNKRGFEIAVET 118
           +       +++ +++E  +          LTGGEPLL  ++  LI   L+    E+ +ET
Sbjct: 50  EAELMTAAEVSQMVKESGV------DLVTLTGGEPLLDENISELIGGILSLPKMELEIET 103

Query: 119 NGTIEP 124
           NG+I  
Sbjct: 104 NGSIPI 109


>gi|327400839|ref|YP_004341678.1| Radical SAM domain-containing protein [Archaeoglobus veneficus
           SNP6]
 gi|327316347|gb|AEA46963.1| Radical SAM domain protein [Archaeoglobus veneficus SNP6]
          Length = 238

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 97/248 (39%), Gaps = 67/248 (27%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I+EIF ++QGEG   G   +F RF+ CNL            C +CDT       T     
Sbjct: 14  IREIFESIQGEGILVGVRQLFVRFARCNL-----------NCIYCDTPTDSTDCTNH--I 60

Query: 66  NVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
             ++L + +  ++++   ++      LTGGEPLL  D   I +L K      +ETN ++ 
Sbjct: 61  TGEKLPNPVSREYVSEFFDRNVHSICLTGGEPLLYAD--FIASLPKT-RPFYLETNMSLP 117

Query: 124 ----PPQGIDWICVSPKAGCDLKIKGGQEL---------------------KLVFPQV-- 156
                   +D++    K    + + G +EL                     K V P+   
Sbjct: 118 EMAKKLTHVDFVAGDFKVREAI-VDGYEELVENTVRCFRILRNREDRLTFCKFVLPERFD 176

Query: 157 -------NVSPENYIGFDFERFSLQPMDG-------PFLEENTNLAISYCFQNPKWRLSV 202
                   +S ENY+    E F LQP+ G         LE    L    C      R+  
Sbjct: 177 AEEVINNAISVENYV----ECFILQPVFGTSKRGIETILELQKVLMEKVCV---DVRVIP 229

Query: 203 QTHKFIGI 210
           Q HK++G+
Sbjct: 230 QVHKYLGV 237


>gi|85707657|ref|ZP_01038723.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter sp.
           NAP1]
 gi|85689191|gb|EAQ29194.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter sp.
           NAP1]
          Length = 245

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 58/173 (33%), Gaps = 26/173 (15%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---------IQ 58
           EIF ++QGEG   G    F R S CNL            C +CDT +             
Sbjct: 15  EIFASIQGEGPSMGTPVAFIRLSRCNL-----------ACTWCDTAYTWRFEGDNRPHRD 63

Query: 59  GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN-KRGFEIAVE 117
           G +  R          +          +  V+TGGEPL+Q   PL   L      E+ +E
Sbjct: 64  GIEYERKANQVALSPAKAAAKIAVLGQKRLVITGGEPLMQ-CGPLADMLAILPDIEVEIE 122

Query: 118 TNGTIEPPQGIDW----ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
           TNGT      ID       VSPK            +          P  +  F
Sbjct: 123 TNGTTRASAHIDIRVDQYNVSPKLAHSGNDASLALIAERLDDYAADPRAFFKF 175


>gi|20094254|ref|NP_614101.1| organic-radical-activating enzyme [Methanopyrus kandleri AV19]
 gi|19887288|gb|AAM02031.1| Organic-radical-activating enzyme [Methanopyrus kandleri AV19]
          Length = 252

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 91/251 (36%), Gaps = 64/251 (25%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
            ++ E+FL+LQGEG   G    F RFSGCNL           +C +CD            
Sbjct: 13  LNVYEVFLSLQGEGKFVGEPQAFVRFSGCNL-----------RCAYCDEPASRSSRRRAL 61

Query: 57  ---IQGTKGGRYNV----DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQA 106
              + G       V    + + +++ E     E       LTGGEPL+Q       LI+ 
Sbjct: 62  IRRVSGEVELELPVPCGPEDVVEVLVELEDL-EDTFGTVSLTGGEPLVQPWGALKELIER 120

Query: 107 LNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIKG-------------------G 146
           L +RGF + +ETN ++      ID +        D+K+                      
Sbjct: 121 LRERGFRVLLETNASLPDRAPLIDELA--DVVSADVKLPSHGPNMDDFPDRCLRFLERIS 178

Query: 147 QEL--KLV------FPQVNVSPENYIGFDFERFSLQPMDGP--FLEENTNLAISYCFQNP 196
            E+  K+V      +     + +       E   LQP  G    LE+   LA      N 
Sbjct: 179 AEVYAKVVLVDEECYQHAESALKGLHRLGVEPIYLQPATGSEHDLEDLWELA---GLVNA 235

Query: 197 KWRLSVQTHKF 207
             R+  Q HK 
Sbjct: 236 DVRVLPQVHKL 246


>gi|222055915|ref|YP_002538277.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221565204|gb|ACM21176.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 249

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 66/254 (25%), Positives = 97/254 (38%), Gaps = 68/254 (26%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-----FVGIQGTKG 62
           E+F ++QGEG   G   VF RFSGCNL            C +CDT+     +  ++ T G
Sbjct: 10  EVFSSIQGEGLLVGLRQVFIRFSGCNLT-----------CSYCDTEPDRTQYCQLESTPG 58

Query: 63  GR--------YNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLL--QVDVPLIQALNKRG 111
            R          VD+L +L+   W  G     +   +TGGEPLL  Q+   L+ AL +  
Sbjct: 59  RRDFFQVENPVPVDRLVNLV-SGWQRGWPGIHHSISITGGEPLLCHQLLQELLPAL-RHY 116

Query: 112 FEIAVETNGTIE-----PPQGIDWICVS---PKAGCDLKIKGGQE------------LKL 151
             I +ETNG +          +D++ +    P       +    E            +K 
Sbjct: 117 LPIYLETNGILHGQLAQLLDHVDYVSMDIKLPSTSGYTDLWQAHEEFLRLAASKKTYVKT 176

Query: 152 VFP------QVNVSPENYIGFDFER-FSLQP---------MDGPFLEENTNLAISYCFQN 195
           V        ++  + E     D      LQP         +    + E    A  Y  + 
Sbjct: 177 VIGTDTEDWEIIRTAELVAAIDSRIPLILQPFTDLKGRVNLSAIRMLEMQETANRYLQE- 235

Query: 196 PKWRLSVQTHKFIG 209
              R+  QTHKFIG
Sbjct: 236 --VRIIPQTHKFIG 247


>gi|118474370|ref|YP_891426.1| radical SAM domain-containing protein [Campylobacter fetus subsp.
           fetus 82-40]
 gi|261886249|ref|ZP_06010288.1| radical SAM domain-containing protein [Campylobacter fetus subsp.
           venerealis str. Azul-94]
 gi|118413596|gb|ABK82016.1| radical SAM domain protein [Campylobacter fetus subsp. fetus 82-40]
          Length = 241

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 17/180 (9%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGR-----EQDRLSAQCRFCDT-DFVG 56
           + ++ E F ++QGEG  +GR ++F R  GCNL         +  +       CDT   V 
Sbjct: 1   MVNVVEYFTSVQGEGKFSGRYSLFIRLGGCNLSCKGFGVKIKSPKTGEILVGCDTIKAVQ 60

Query: 57  IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ----VDVPLIQALNKRGF 112
            +  +  +++ + L +L++E            V+TGGEPLL       +  IQ   ++ +
Sbjct: 61  TEHFEHNKFDFEALVNLVKETEF-----KPLIVITGGEPLLWYKDEDLIKFIQWCFEQNY 115

Query: 113 EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
           E+  ETNG+I        +    K    +K+    E K    ++N      I  + + F 
Sbjct: 116 EVHFETNGSIFVDFDKFKVYKKCKFAVSVKLAISGEPKS--KRINQKALQAIFANADAFY 173


>gi|304315357|ref|YP_003850504.1| glycyl radical-activating enzyme [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588816|gb|ADL59191.1| predicted glycyl radical-activating enzyme [Methanothermobacter
           marburgensis str. Marburg]
          Length = 244

 Score =  117 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 21/139 (15%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            I E+F ++QGEG   G+  +F RF+GCNL            C +CDT       + G  
Sbjct: 4   PIMEVFSSIQGEGLLVGKRQIFIRFAGCNL-----------NCSYCDTP-ESRDPSCGEE 51

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
            + DQL  ++E        +     +TGGEPLL  D  + + L    +   +ETNG++  
Sbjct: 52  LSADQLLGMVENLV---TPDFHSLSITGGEPLLYPDF-IREFLEDSPWSALLETNGSLPA 107

Query: 125 PQG-----IDWICVSPKAG 138
                    D+  V  K  
Sbjct: 108 SARRISHFFDYASVDIKTS 126


>gi|29566198|ref|NP_817766.1| gp5 [Mycobacterium phage Rosebush]
 gi|109521763|ref|YP_655685.1| gp5 [Mycobacterium phage Qyrzula]
 gi|29424923|gb|AAN01847.1| gp5 [Mycobacterium phage Rosebush]
 gi|91980707|gb|ABE67425.1| gp5 [Mycobacterium phage Qyrzula]
          Length = 237

 Score =  117 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 72/182 (39%), Gaps = 29/182 (15%)

Query: 2   KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI--Q 58
            +  + E+F  TLQGEG +AG    F R  GCNL            C +CDT +     +
Sbjct: 6   SVLPVSELFGPTLQGEGPYAGVTVQFLRLMGCNL-----------SCSWCDTPYTWDARE 54

Query: 59  GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR----GFEI 114
                   +    D+++             V++GGEPLL       QA+ +     G E+
Sbjct: 55  HDLNAETTLLAWPDIVDALL-----PDTPLVISGGEPLLHQKHSAFQAVLQHAWRKGCEV 109

Query: 115 AVETNGTIEPPQ----GIDWICVSPKAGCDLKIKGGQELKLV--FPQVNVSPENYIGFDF 168
            +ETNGT+ P      G     VSPK       +G Q+  +   +  + V  + ++    
Sbjct: 110 HIETNGTLAPLAATVSGTTVFAVSPKLSHAGPHRGRQDAAIADGWADLAVQGKAFLKVVV 169

Query: 169 ER 170
             
Sbjct: 170 RH 171


>gi|258511917|ref|YP_003185351.1| Radical SAM domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478643|gb|ACV58962.1| Radical SAM domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 253

 Score =  117 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 83/240 (34%), Gaps = 57/240 (23%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
             + EIF T++GEG  AG    F R   CNL           +C +CDT +         
Sbjct: 28  LPMVEIFETVEGEGTRAGFPTTFVRVFHCNL-----------RCTWCDTPYSYAPERPAF 76

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFE----IAVE 117
              + ++A+ +E              LTGGEPL+       LI+A+   G      + VE
Sbjct: 77  HATLREIAEQVEAFGW------PNVCLTGGEPLIHRHKSQLLIEAI--AGIPSVRDVHVE 128

Query: 118 TNGTIEPPQGIDWICVSPKA------GCDLKIKGG-----------------QELKLVF- 153
           TNG I+    +     S +         D K+                     E+K V  
Sbjct: 129 TNGAIDVRPYVRLRDASARLRDVVRFIVDYKLPASGEESRMIGEHLTSLSERDEVKFVIA 188

Query: 154 PQVNVSPENYIGFDF---ERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
            + + +    +           + P+       +    ++   ++     +LS+Q HK I
Sbjct: 189 DERDFARALEVMEAHPTRATILMSPVWETMPPRDL---VALILKHRLRDVKLSLQLHKVI 245


>gi|313894807|ref|ZP_07828367.1| radical SAM domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312976488|gb|EFR41943.1| radical SAM domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 243

 Score =  117 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 69/157 (43%), Gaps = 32/157 (20%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQGT--- 60
           +I EIF ++QGEG + G   VF R  GCNL            C +CDT   +G   T   
Sbjct: 4   NIIEIFSSIQGEGKYVGCRQVFVRLEGCNL-----------DCTYCDTEKEIGRHPTCVV 52

Query: 61  -----------KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
                           +++ +A L  +  + G        +TGGEPLL   VP I+AL+ 
Sbjct: 53  EMPAGSHELHSYENPLSIETVAALAAQ--VAGGVPHHSLSVTGGEPLLH--VPFIRALSA 108

Query: 110 R-GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
           R    I +ETNGT+         CVS     D+K+ G
Sbjct: 109 RIPLPIFLETNGTLYEALAHCIDCVS-YISMDIKLPG 144


>gi|116329391|ref|YP_799111.1| organic radical activating protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116330008|ref|YP_799726.1| organic radical activating protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116122135|gb|ABJ80178.1| Organic radical activating enzyme [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116123697|gb|ABJ74968.1| Organic radical activating enzyme [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 243

 Score =  117 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 94/239 (39%), Gaps = 50/239 (20%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           S+ EI+L+L GEG   G   VF R +GC+L  G    +      +CDT +       G  
Sbjct: 13  SVHEIYLSLSGEGISTGIPTVFVRMAGCSLRCGMAIGKKL----WCDTPYALSPSA-GEE 67

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI---------- 114
            ++ ++ + I+E      +     +LTGGEPL   +     AL    F            
Sbjct: 68  MDLKRVLNRIQELSPVYTQ----VLLTGGEPLEGGNRDFSLALGNEIFRTRKFSNSYPRA 123

Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKG-GQELKLVFPQVNVSPE-----NYIGF-- 166
            VETNG  E  +G+D          D K+ G G E ++    + +  +     + I F  
Sbjct: 124 RVETNGA-ESIEGLDQFVF----TLDYKLPGSGMENRMNLENLEIYNKRKNELDEIKFVI 178

Query: 167 ----DFER-------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
               DFER                 P+ G    E  +  +       + RLS+QTHK+I
Sbjct: 179 RDRNDFERCLEVIKVHELSGNLLASPVQGELSPEILSEWLKSSL-GSRLRLSLQTHKYI 236


>gi|145219296|ref|YP_001130005.1| radical SAM domain-containing protein [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205460|gb|ABP36503.1| Radical SAM domain protein [Chlorobium phaeovibrioides DSM 265]
          Length = 223

 Score =  117 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 56/232 (24%), Positives = 87/232 (37%), Gaps = 47/232 (20%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           L  I EIF ++QGE  +AG    F R +GC           S  CR+CD+ +        
Sbjct: 5   LLKISEIFRSIQGESSYAGWPCAFIRLAGC-----------SHNCRYCDSLYARNTE--- 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
            R    ++                   +TGGEPL Q  V  L+  L   G ++ +ET G 
Sbjct: 51  ERLTTREVVSRALALKTE------IIEITGGEPLEQPGVHQLMTELCNTGRKVLLETGGF 104

Query: 122 IEPPQGID-----WICVSP-------KAGCD---LKIKGGQELKLVFP-QVNVSPENYIG 165
           I    GID      I + P       K   +   L  K G+EL+  F  ++ V+  N   
Sbjct: 105 IPV-AGIDPRVHKIIDLKPPSSGESGKNCMENITLAFKAGKELQKSFEFKMVVADRNDYL 163

Query: 166 FDFERFSLQP--------MDGPFLEENTNLAISYCFQN-PKWRLSVQTHKFI 208
           +  +   + P        M     E        +  ++  + R+ +Q HK +
Sbjct: 164 WSRDLLRMHPLQKSCTVLMGVVAGELAPAQLADWILEDGLRVRMQLQLHKLL 215


>gi|224372460|ref|YP_002606832.1| radical SAM domain protein [Nautilia profundicola AmH]
 gi|223589672|gb|ACM93408.1| radical SAM domain protein [Nautilia profundicola AmH]
          Length = 233

 Score =  117 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 91/223 (40%), Gaps = 42/223 (18%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           KL  + EIF ++QGEG +AG  +VF R  GCNL      ++       CD+ +   +  K
Sbjct: 5   KLIPVSEIFYSIQGEGKYAGHPSVFVRVGGCNLKCPGFGEKG------CDSYYAVDKSYK 58

Query: 62  GGR--YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVE 117
                 +V+++   + +      ++  + V+TGGEP L      PL+        +I VE
Sbjct: 59  SEWKLMSVEEIKSEVSKYI----RKDTHLVITGGEPTLFYKQLYPLVVWFEG---QITVE 111

Query: 118 TNGTIEP-----PQGIDW-ICVSPKAGCDLKIKGGQELKLVF-PQVNVSPENYIGFDFER 170
           TN T++      P   D    +S K     +  G +  K V    V  +P+++  F  ++
Sbjct: 112 TNTTVDIDFEKYPAYKDVAFAMSVKLSNSAEEYGKRVKKHVIKSYVKNAPKSFFKFVIDK 171

Query: 171 ----------------FSLQPM--DGPFLEENTNLAISYCFQN 195
                               P+  D   LE+N      +C ++
Sbjct: 172 DLNNEIKDITAGINAPVYCMPLGADKEELEKNAPFVFGFCLKH 214


>gi|149187035|ref|ZP_01865342.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter sp.
           SD-21]
 gi|148829324|gb|EDL47768.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter sp.
           SD-21]
          Length = 244

 Score =  117 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 60/154 (38%), Gaps = 40/154 (25%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---------Q 58
           EIF ++QGEG   GR   F R S CNL            C +CDT +             
Sbjct: 14  EIFASVQGEGPSVGRPVAFMRLSRCNL-----------ACVWCDTAYTWHFEGDNRPHRD 62

Query: 59  GTKGGR------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKR 110
           G    R       + +++A  I +            V+TGGEPLL  Q    L+  L   
Sbjct: 63  GVTFERKANQVTLDEEEVAARITQLGQDR------LVITGGEPLLQAQALAKLLDLLPD- 115

Query: 111 GFEIAVETNGTIEPPQ----GIDWICVSPKAGCD 140
              + +ETNGT + P      ID   VSPK    
Sbjct: 116 -ISVEIETNGTTKAPPRLDIRIDQFNVSPKLAHS 148


>gi|325958051|ref|YP_004289517.1| Radical SAM domain-containing protein [Methanobacterium sp. AL-21]
 gi|325329483|gb|ADZ08545.1| Radical SAM domain protein [Methanobacterium sp. AL-21]
          Length = 233

 Score =  117 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 90/259 (34%), Gaps = 74/259 (28%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK  +I E+F + QGEG   GR  +F RFSGCNL            C +CDT        
Sbjct: 1   MKT-NINEVFSSFQGEGTLIGRRQIFVRFSGCNL-----------DCSYCDTP-ESRNPQ 47

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
            G   + D+L   +         +      TGGEPLL  +  + + L +  F+  +ETNG
Sbjct: 48  YGELISTDELYSKVNSII---TPDFHSISFTGGEPLLHSNF-IKKFLEEYEFKSMLETNG 103

Query: 121 TIEPPQG-----IDWICVSPKAG-----------CDLKIKGGQELK----------LVFP 154
           T+          +D++ +  K              DL++K  + L+          +V P
Sbjct: 104 TLPAELNKIAHLLDYVSLDIKLPEHGASNNYADILDLELKSIKLLRDEEINTYIKVVVMP 163

Query: 155 QVNVS---------PENYIGFDFERFSLQPMDG-PFLEENTNLAISYCFQNPKWRLS--- 201
           Q  V           +           LQP+       + T              LS   
Sbjct: 164 QTEVELISSIASRIADEVEKTSELVMVLQPVSPITVWADGTQKLFE---------LSEVA 214

Query: 202 ---------VQTHKFIGIR 211
                     Q HK + ++
Sbjct: 215 GKYIDVLTIPQVHKLLNVK 233


>gi|296272038|ref|YP_003654669.1| radical SAM domain-containing protein [Arcobacter nitrofigilis DSM
           7299]
 gi|296096213|gb|ADG92163.1| Radical SAM domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 249

 Score =  117 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 24/187 (12%)

Query: 3   LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGR-----EQDRLSAQCRFCDTDFVG 56
           +  + EIF  T+QGEG + G  ++F RF  CN          E      +C  CD+ +  
Sbjct: 1   MLEVNEIFGPTIQGEGKYVGNPSIFIRFGKCNFRCEGFAVEYETPSGVKKCS-CDSFYAV 59

Query: 57  IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALN---KRGF 112
               K   + +++  ++I +            V+TGGEPLL   D    + L      G+
Sbjct: 60  DPAFKDQWHKMNK-NEIINQVKKLEPSYKVDIVITGGEPLLYWKDEEFQEILKYYISNGY 118

Query: 113 EIAVETNGTIEPPQGIDW-----ICVSPKAGC---DLKIKGGQE-LKLVFPQVNVSPENY 163
           ++ +ETNG++      ++       +S K       LK +  +E LK +      + E+Y
Sbjct: 119 KVTIETNGSLNIDFTKEYQKELIFSMSVKLSNSLEPLKKRVNEETLKKIITN---TKESY 175

Query: 164 IGFDFER 170
           + F   +
Sbjct: 176 LKFVISK 182


>gi|269798253|ref|YP_003312153.1| radical SAM protein [Veillonella parvula DSM 2008]
 gi|269094882|gb|ACZ24873.1| Radical SAM domain protein [Veillonella parvula DSM 2008]
          Length = 247

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 82/257 (31%), Gaps = 74/257 (28%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           ++ EIF ++ GEG   G +  F R   CN            +C +CDT +     +    
Sbjct: 2   NVIEIFASIDGEGSRQGLLTTFLRLHDCN-----------IRCSYCDTTYSYGIDSVFTE 50

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRG----------- 111
               ++A++IE              +TGGEPLLQ    V LI  LN+R            
Sbjct: 51  MTAAEVANVIESLG------NHRITITGGEPLLQEAAVVELIDELNRRKAETMQDNTSGQ 104

Query: 112 ----------------------FEIAVETNGTIEPPQGID--WICVSPKAGCDLKIKGGQ 147
                                 ++  +ETNGTI P    D  W     K    L  +   
Sbjct: 105 AGSTCIIDIDKFDKREMLNDSLYDFNIETNGTIIPSFHRDNVWFTYDYKTPSSLAEESMN 164

Query: 148 E-----------LKLVF---PQVNVSPENYIGFD-FERFSLQPMDGPFLEENTNLAISYC 192
                       +K V      ++        +    +  + P+ G     +    I Y 
Sbjct: 165 VDIFKVATERDLIKFVVGSPEDLDCMRRIIEQYPTVAQIYVSPVWGQIEPAS---IIDYM 221

Query: 193 FQNP--KWRLSVQTHKF 207
                   R  +Q HKF
Sbjct: 222 KAYNLQNVRFQLQIHKF 238


>gi|312136463|ref|YP_004003800.1| radical sam domain protein [Methanothermus fervidus DSM 2088]
 gi|311224182|gb|ADP77038.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088]
          Length = 232

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/255 (22%), Positives = 93/255 (36%), Gaps = 67/255 (26%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK   + EIF ++QGEG   G+  +F RF+GCNL            C +CDT        
Sbjct: 1   MKA-PVYEIFSSIQGEGLLVGKRQIFVRFAGCNL-----------DCIYCDTP-KSRDPK 47

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
            G  ++VD+L   ++        +     LTGGEPLL  D  + + L K  F   +ETNG
Sbjct: 48  NGKLFSVDELYKSVKSLV---TPDLHSICLTGGEPLLYADF-IKKFLKKCEFNALLETNG 103

Query: 121 TIE-----PPQGIDWICVSPKAGCDLKIKGGQEL------------------KLV--FPQ 155
           ++        + ID+      A  D+K+     +                  K V  + +
Sbjct: 104 SLPDNAKVISKFIDY------AAVDIKLPRYITVMGEEIIEKEIETINILMAKKVYTYCK 157

Query: 156 VNVSPENYIGFDFE---------------RFSLQPMD----GPFLEENTNLAISYCFQNP 196
           + V P   +    +               +  LQP          ++          ++ 
Sbjct: 158 IVVLPSTKVKSLKKVVKKIRDGIVNPLGLQIVLQPSSPLKNWIGKQKRLLKMSEIIGKDF 217

Query: 197 KWRLSVQTHKFIGIR 211
             R+  Q HK +  R
Sbjct: 218 NVRIIPQIHKILKFR 232


>gi|126642575|ref|YP_001085559.1| putative organic radical activating enzyme [Acinetobacter baumannii
           ATCC 17978]
 gi|126388459|gb|ABO12957.1| putative organic radical activating enzyme [Acinetobacter baumannii
           ATCC 17978]
          Length = 124

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 29/138 (21%)

Query: 14  QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73
           QGE   +G   VF R +GC L           +C +CDT +       G R +++ + + 
Sbjct: 2   QGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGERLSLEHIIET 47

Query: 74  IEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
            E      + +  Y  +TGGEPL Q + + L+Q L   GF++++ET+G ++  +      
Sbjct: 48  AE------KYQTPYICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSGALDVSR------ 95

Query: 133 VSPKAG--CDLKIKGGQE 148
           V P+     DLK     E
Sbjct: 96  VDPRVSKVLDLKTPTSGE 113


>gi|329940403|ref|ZP_08289684.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptomyces
           griseoaurantiacus M045]
 gi|329300464|gb|EGG44361.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptomyces
           griseoaurantiacus M045]
          Length = 247

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 75/205 (36%), Gaps = 34/205 (16%)

Query: 6   IKEIF----LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG-- 59
           + E F     T QGEG   G  A+F R S CNL   R           CDT +       
Sbjct: 21  VAECFGTEVPTFQGEGPSCGHPALFIRLSRCNLTCTR-----------CDTKYTWDWSRF 69

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVE 117
                     +A L+              V+TGGEPL+Q    VPLI+ L   G  I  E
Sbjct: 70  DPHEESTRQSVAGLVA---WATSSPVELVVITGGEPLIQQARLVPLIRGLIAVGKRIEFE 126

Query: 118 TNGTIEPPQGID----WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
           TNGTI P   +        VSPK        G +E K + P    + E ++      F  
Sbjct: 127 TNGTIAPTPELAADGVRFNVSPKLASF----GVKETKSIVP---AALEAFVASGRAAFKF 179

Query: 174 QPMDGPFLEENTNLAISYCFQNPKW 198
                  L+    LA ++    P W
Sbjct: 180 VASTVDDLDRIAELADAHRLT-PVW 203


>gi|78186318|ref|YP_374361.1| radical activating enzyme, putative [Chlorobium luteolum DSM 273]
 gi|78166220|gb|ABB23318.1| radical activating enzyme, putative [Chlorobium luteolum DSM 273]
          Length = 223

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 85/238 (35%), Gaps = 57/238 (23%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
            +  I EIF ++QGE   AG    F R +GC           S  CR+CDT +      +
Sbjct: 4   TILQISEIFHSIQGESSFAGWPCTFIRLAGC-----------SHGCRYCDTTYAKTAERR 52

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
                   + D I+E             +TGGEPL Q  V  L+ AL   G  + +ET G
Sbjct: 53  ------LSIGDTIDEARR---YHAHLIEVTGGEPLEQPAVHKLLHALCDGGGGVMLETGG 103

Query: 121 TIEP-------PQGIDWICVS---PKAGC----DLKIKGGQ------ELKLVFPQVNVSP 160
            +          + ID    S    K  C    D+ +  G+      E K+V        
Sbjct: 104 FLSVRDVDPRVHKVIDLKPPSSGRDKENCMENIDIALNAGEGERKRYEFKIVA----ADR 159

Query: 161 ENYIGF----------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
           E+Y+            +     + P+ G        LA          R+ +Q H++I
Sbjct: 160 EDYLWARGILKDTRLAEACTVMMGPIAGTIHPS--ELAGWILEDRLHVRMQLQLHRYI 215


>gi|326388331|ref|ZP_08209927.1| radical SAM family protein [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207063|gb|EGD57884.1| radical SAM family protein [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 248

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 62/151 (41%), Gaps = 30/151 (19%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           E+F +LQGEG   GR +VF R S CNL            CR+CDT +          +  
Sbjct: 14  ELFASLQGEGASLGRPSVFVRLSRCNL-----------ACRWCDTAYTWRFSGDNRPHRD 62

Query: 68  DQLADLIEEQWITGE---------KEGRYCVLTGGEPLLQV-----DVPLIQALNKRGFE 113
           D   +    Q    E               V+TGGEPLLQ       +  ++A N+    
Sbjct: 63  DIAFERTANQITADEGDIATRILAFGVPRLVVTGGEPLLQAPALARMIAAVRAGNEA-MH 121

Query: 114 IAVETNGTIEPPQG----IDWICVSPKAGCD 140
           I +ETNG++ P       ID   VSPK    
Sbjct: 122 IEIETNGSVAPTPALDALIDQYNVSPKLAHS 152


>gi|307721837|ref|YP_003892977.1| hypothetical protein Saut_1922 [Sulfurimonas autotrophica DSM
           16294]
 gi|306979930|gb|ADN09965.1| conserved hypothetical protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 252

 Score =  115 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 9/131 (6%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS----GREQDRLSAQCRFCDTDFV-GI 57
           +  + E F ++QGEG + G  ++F RF GCN+       +E     A+   CDT +    
Sbjct: 1   MIYLVEHFYSIQGEGKYVGTPSLFFRFGGCNMKCEGFGCKETASDGAEVLGCDTVYAVNK 60

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFE 113
           +        +++  +L+    +    E    VLTGGEPL+  +       ++ L ++G +
Sbjct: 61  EHFLQNWIPINKAQELLSILSLYDLPEAVDIVLTGGEPLIYANDEIFVDFLEVLVEQGHQ 120

Query: 114 IAVETNGTIEP 124
           I  ETNG++  
Sbjct: 121 ITFETNGSLAV 131


>gi|302392164|ref|YP_003827984.1| radical SAM domain protein [Acetohalobium arabaticum DSM 5501]
 gi|302204241|gb|ADL12919.1| Radical SAM domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 240

 Score =  115 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 88/252 (34%), Gaps = 64/252 (25%)

Query: 1   MKL----YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG 56
           M++      + EIF ++ GEG  AG +  F R +GCNL           +C +CDT +  
Sbjct: 1   MEMEGVKLPVVEIFNSISGEGISAGEIVTFVRVAGCNL-----------RCDYCDTMYSY 49

Query: 57  IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----VPLIQALNKRGF 112
               +       Q+ + I           +  + TGGEPL +      +PL   L K+GF
Sbjct: 50  QD-EEYELLTPQQIVNRI------NNFGTQQVICTGGEPLEEDKPKRYLPL--YLAKQGF 100

Query: 113 EIAVETNGTIEPPQG----------------IDWICVSPKAGCDLKIKG------GQELK 150
           E+ +ETNG+                      +D  C S                   E+K
Sbjct: 101 EVRIETNGSWSVYNQQELQKFGLDGEGINYTLDIKCPSSNMAEYNLFTNLEQLGLNDEIK 160

Query: 151 LVFPQVNVSPENYIGFDFERFSL--QPM----DGPFLEENTNLAISYCFQN--------P 196
            V    +         D  +  L  Q +       F E      +S   ++         
Sbjct: 161 FVVQDKSDIDYALKVIDDYKNELSKQEIVINFSPVFEELAPKKLVSILQEHQTYFAQFNL 220

Query: 197 KWRLSVQTHKFI 208
           K RLS+Q HK I
Sbjct: 221 KVRLSIQLHKLI 232


>gi|223038702|ref|ZP_03608995.1| FO synthase subunit 2 2 [Campylobacter rectus RM3267]
 gi|222880104|gb|EEF15192.1| FO synthase subunit 2 2 [Campylobacter rectus RM3267]
          Length = 254

 Score =  115 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 11/134 (8%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL-----SAQCRFCDTDFV 55
           M L ++ E FL++QGEG  +GR+A+F RF+GCNL       R            CDT   
Sbjct: 1   MSL-NLVENFLSIQGEGASSGRLAIFLRFAGCNLNCAGFGVRAISPKTGETLVGCDTVRA 59

Query: 56  GIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALN---KR 110
              G     + +       I +      ++    V+TGGEPLL   +  L+  L+     
Sbjct: 60  VFTGHFSYQKISRADELAKITQNLSVNLRQKPILVITGGEPLLHHKNRILLDFLDFATSE 119

Query: 111 GFEIAVETNGTIEP 124
           G+E   ETNGTIE 
Sbjct: 120 GYEPHFETNGTIEV 133


>gi|325279462|ref|YP_004252004.1| Radical SAM domain-containing protein [Odoribacter splanchnicus DSM
           20712]
 gi|324311271|gb|ADY31824.1| Radical SAM domain protein [Odoribacter splanchnicus DSM 20712]
          Length = 267

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 86/226 (38%), Gaps = 45/226 (19%)

Query: 12  TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
           T+QGEG   G  ++F R +GCNL    +     +    CD+ +   Q     + +V+ + 
Sbjct: 33  TVQGEGKLCGIPSLFVRLAGCNLQCHWQTSDGLS--SPCDSAYAAYQLKDTRQVSVEAIY 90

Query: 72  DLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALN-KRGFEIAVETNGTIEPPQG- 127
             + +         R+ VLTGGEPLLQ      L Q L     F + +ETN T+  P+  
Sbjct: 91  TTLLQ----NAGPIRHIVLTGGEPLLQVKELKALCQKLKSDYRFHLTLETNATLFDPELA 146

Query: 128 --IDWICVSPKAG------CDLKIKGGQ------------------ELKLVF------PQ 155
             ID   +SPK          L I+                     +LK V+       +
Sbjct: 147 RYIDLFSLSPKLSSSYTGASPLSIQRLNPECIQQYISSARQYQKDFQLKFVYACDEDIDE 206

Query: 156 VNVSPENYIGFDFERFSLQPMDG--PFLEENTNLAISYCFQNPKWR 199
           +         +  +   L P+ G    +  N    + YC +N  WR
Sbjct: 207 IQQLLSVLQAWKNDDILLMPLGGTPEIMRRNMRKTLEYCIRN-GWR 251


>gi|212223604|ref|YP_002306840.1| organic radical activating enzyme [Thermococcus onnurineus NA1]
 gi|212008561|gb|ACJ15943.1| organic radical activating enzyme [Thermococcus onnurineus NA1]
          Length = 253

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 59/265 (22%), Positives = 94/265 (35%), Gaps = 68/265 (25%)

Query: 1   MKLYSIKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-F 54
           MKL  + E+F + QGEGG       GR  +F RF+GC+L            C +CD+  F
Sbjct: 1   MKLI-MAEVFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------NCVWCDSKEF 48

Query: 55  VGIQGTKGGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--V 99
           +        RY V+              L ++++        +      TGGEP LQ   
Sbjct: 49  IDASKVLRWRYEVEPFTGKFEYKPNPASLGEVVDAILRLDTGDIHSISYTGGEPTLQVRP 108

Query: 100 DVPLIQALNKRGFEIAVETNGTIEPP----------QGIDWICVSPKAGCDLKIKGGQEL 149
              L++ +++ GF   +ET+G +               ID    + KA  D K    +E+
Sbjct: 109 LKALMERMHELGFSNFLETHGGLPELIKEVAHLTDYASIDIKDETAKATEDWKALVLREV 168

Query: 150 KLVFPQVNVSPENYIGFDFER-------------------FSLQP-----MDGPFLEENT 185
           + +        E Y      +                     +QP     +  P L E  
Sbjct: 169 ESIRILKEAGAETYAKLVVTKDTKIENVRWYASLLKGLAPLVIQPREPIDISQPKLMEFY 228

Query: 186 NLAISYCFQNPKWRLSVQTHKFIGI 210
             A +         LS Q HK++ +
Sbjct: 229 REA-ALIMGRKNVGLSFQVHKYLNV 252


>gi|261403228|ref|YP_003247452.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
 gi|261370221|gb|ACX72970.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
          Length = 243

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 84/254 (33%), Gaps = 62/254 (24%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV--------GI 57
           I+EIF ++ GEG + GR  +F RF+GC L            C +CD +            
Sbjct: 2   IREIFNSIMGEGKYIGRRFIFIRFAGCPL-----------NCLYCDEEHKKHVNLVEQYP 50

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIA 115
              K  + N++   D+I+        +      TGGEPLL       + + L   G+   
Sbjct: 51  SSGKFEKQNLESEEDIIKAVNKLKTPDLFSVSFTGGEPLLYHKEIKEISKILKNLGYRTF 110

Query: 116 VETNGTIE-PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS-- 172
           +E+NG         D   +  K     K  G +E K ++     + + +     + ++  
Sbjct: 111 LESNGIFPERVFHFDIASIDIKLKDHFKNIGEEEYKKIYKNELKTIKKFYNMGTDVYAKI 170

Query: 173 ------------------------------------LQPMDGPFLEENTNLAISYCFQNP 196
                                               +QP     L +       +   N 
Sbjct: 171 VITKDSKINDLVEISKDLSDIGDVMLCIQPATPINNIQPPSQKTLFKIMEACGEHLKDNV 230

Query: 197 KWRLSVQTHKFIGI 210
              L++Q HK + I
Sbjct: 231 M--LTLQIHKILNI 242


>gi|111222166|ref|YP_712960.1| mycobacteriophage protein Gp5 [Frankia alni ACN14a]
 gi|111149698|emb|CAJ61390.1| Mycobacteriophage protein Gp5 [Frankia alni ACN14a]
          Length = 221

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 23/158 (14%)

Query: 14  QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73
           QGEG  AGR+A F R  GCNL            C +CDT +       G R+++      
Sbjct: 2   QGEGPAAGRLATFVRLGGCNL-----------SCSWCDTSYTW----DGARFDLRTEITS 46

Query: 74  IEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNGTIEP-PQGI 128
              + I  +      V+TGGEPLL  + P    L++ L ++   I VETNGT+ P P  +
Sbjct: 47  TAVETIAAKVTTDLVVITGGEPLLHQERPGWTALLRTLTQQQRAIHVETNGTVRPTPMSL 106

Query: 129 DWI---CVSPKAGCDLKIKGGQELKLVFPQVNVSPENY 163
             +    VSPK       +G Q  +L      ++ ++ 
Sbjct: 107 QHVAMWVVSPKLRNAGTHRGRQRARLATEWPALAAQHD 144


>gi|292669396|ref|ZP_06602822.1| radical SAM domain protein [Selenomonas noxia ATCC 43541]
 gi|292648957|gb|EFF66929.1| radical SAM domain protein [Selenomonas noxia ATCC 43541]
          Length = 243

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 89/252 (35%), Gaps = 69/252 (27%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-------FVGI 57
           +I EIF ++QGEG + G   +F R  GCNL            C +CDT+          +
Sbjct: 4   NIIEIFSSIQGEGKYVGCRQIFVRLEGCNL-----------DCTYCDTENEIGRHPHCMV 52

Query: 58  QGTKG--------GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
           +   G           +  + A++I    I G+       +TGGEPLL   VP I+ L  
Sbjct: 53  EEDAGSHALISYENPLSAQRTAEIIAR--IVGDVPHHSLSMTGGEPLLH--VPFIRELAA 108

Query: 110 R-GFEIAVETNGTIEP-----PQGIDWICVSPKAGCDLKIKGGQE---------LKLVFP 154
                + +ETNGT++         ID I +  K    L +               K V+ 
Sbjct: 109 HVHLPLFLETNGTLDQALAECIDCIDIISMDIKLPDVLSVPVWDAHARFLAVARAKDVYV 168

Query: 155 QVNVSPENYIG------------FDFERFSLQPM---------DGPFLEENTNLAISYCF 193
           ++ V+ E                       LQP+             L     LA+ +  
Sbjct: 169 KIVVAAETADDDIVTAARIVADTAPETLLILQPVTPYGGCTAPTPEHLLAFQRLALRHV- 227

Query: 194 QNPKWRLSVQTH 205
                R+  QTH
Sbjct: 228 --SDVRIIPQTH 237


>gi|18311650|ref|NP_558317.1| coenzyme PQQ synthesis protein, conjectural [Pyrobaculum aerophilum
           str. IM2]
 gi|18159047|gb|AAL62499.1| coenzyme PQQ synthesis protein, conjectural [Pyrobaculum aerophilum
           str. IM2]
          Length = 222

 Score =  114 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 56/141 (39%), Gaps = 25/141 (17%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            + EIF +LQGEG + GR AVF R +GC             +C +CDT +       G  
Sbjct: 8   RVLEIFASLQGEGINLGRPAVFVRLAGCP-----------IRCIYCDTKYSW-DFNAGVE 55

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQALNKRGFEIAVETNGT 121
             V+++        + G            EPL+        L  AL   G  + VET+G 
Sbjct: 56  MGVEEIVAKALALSVVGHVVVTGG-----EPLIWQRRGLEELACALRALG-SVEVETSGA 109

Query: 122 IEPPQ----GIDWICVSPKAG 138
             P       +D+  VSPK  
Sbjct: 110 YPPTPELDRCVDFYDVSPKLS 130


>gi|256810231|ref|YP_003127600.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
 gi|256793431|gb|ACV24100.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
          Length = 243

 Score =  114 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 89/258 (34%), Gaps = 72/258 (27%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-----QGT 60
           IKEIF ++ GEG + GR  +F RF+GC L           +C +CD +         +  
Sbjct: 2   IKEIFSSIMGEGKYIGRRFIFVRFAGCPL-----------KCIYCDEESKSYLNRVEKIP 50

Query: 61  KGGRYNV---DQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
             G +       + D++         +      TGGEPLL       + + L  +G+   
Sbjct: 51  GSGEFETLKNMDVEDVVNAVDKLRTPDLFAVSFTGGEPLLYSKKIKEIAEILKDKGYRTF 110

Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGG------QELK------------------- 150
           +E+NG    P+ + +  +   A  D+K+K         E K                   
Sbjct: 111 LESNGLF--PEKVFYFDI---ASIDIKLKEHFEFIKDNEYKKLYKKELETIKKLYNLNSD 165

Query: 151 -----LVFPQVNVSPENYIGFDFE-----RFSLQPM---------DGPFLEENTNLAISY 191
                ++    ++     I  D          +QP+             L E       Y
Sbjct: 166 VYAKVVIMENTDIEDVKRIAKDLSDIGDITLCIQPVTPNGDIKSPSQRKLFEIMEACGEY 225

Query: 192 CFQNPKWRLSVQTHKFIG 209
              N    L++Q HK++G
Sbjct: 226 LKDNVM--LTIQMHKYLG 241


>gi|332179391|gb|AEE15080.1| Radical SAM domain protein [Thermodesulfobium narugense DSM 14796]
          Length = 216

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 98/239 (41%), Gaps = 55/239 (23%)

Query: 3   LYSIKEIFLTLQGEGGHA--GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           + +I  IF ++ GE G    G      R  GCNL           +CR+CDT        
Sbjct: 1   MIAIHSIFESISGEVGFMPQGSWCTIVRLQGCNL-----------RCRWCDTKDSQSIEA 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119
           K    ++D++ D           +    ++TGGEPL+Q + + LI  L +R   + +ETN
Sbjct: 50  KY-MLSIDEVIDR---------CKNHKVLITGGEPLIQEETLKLIDRLIERHHFVQIETN 99

Query: 120 GTIEPPQGID----WIC--VSPKAGCDLKIKGGQE-----------LKLVFPQVNVSPEN 162
           G+I  P G      W+     P +G   ++   +E           +KLV        E 
Sbjct: 100 GSIFLPSGYSSDCGWVVDYKGPSSGMMDRMPSFEEFIDNWIEHRVIVKLVVDNSKEDLEF 159

Query: 163 YIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRL------SVQTHKFIGI 210
                 +     +F++ P+D    E+  +  +++  +  + +L      S+Q HK +G+
Sbjct: 160 VFQILSKMYGLFQFAISPLDAK-GEKILD-IVNFIRERDE-KLLGDLIFSIQMHKVVGL 215


>gi|254446154|ref|ZP_05059630.1| radical SAM domain protein, putative [Verrucomicrobiae bacterium
           DG1235]
 gi|198260462|gb|EDY84770.1| radical SAM domain protein, putative [Verrucomicrobiae bacterium
           DG1235]
          Length = 208

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 68/202 (33%), Gaps = 32/202 (15%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG---GRYNVDQLADLIEE 76
            GR A F R  GC +            C +CD+              R   + LAD  + 
Sbjct: 1   MGRSAYFIRLFGCPV-----------HCPWCDSAGTWHPDYVPKNVERVTPEALADAAKA 49

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP- 135
                     + V+TGGEP++     L +AL  RG    +ET+G  E     DWI +SP 
Sbjct: 50  SG------AEFAVVTGGEPVIHDLKALSEALAARGIGRHLETSGGFEIRGDFDWITLSPK 103

Query: 136 --KAGCDLKIKGGQELKLVFPQVNVSPENYIG------FDFERFSLQP-MDGPFLEENTN 186
             K      ++   E KL+    N S E +I          +   L P            
Sbjct: 104 WQKEPLVENLEKASEFKLIVEDEN-SIEGWIRSVGGFFVSDKPVWLHPEWSQRGNAAVLE 162

Query: 187 LAISYCFQ-NPKWRLSVQTHKF 207
                  +    +R   Q HK 
Sbjct: 163 SITRTVKELGDPYRAGFQLHKL 184


>gi|85373083|ref|YP_457145.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter
           litoralis HTCC2594]
 gi|84786166|gb|ABC62348.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter
           litoralis HTCC2594]
          Length = 245

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 77/233 (33%), Gaps = 47/233 (20%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---------Q 58
           EIF ++QGEG  AG    F R S CNL            C +CDT +             
Sbjct: 15  EIFASVQGEGLSAGAPVAFVRLSRCNL-----------ACVWCDTAYTWHFEGDTRPHRS 63

Query: 59  GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
           G    R       D  +          +  V+TGGEPL+Q               + +ET
Sbjct: 64  GETFERKANQVSLDPADVAERIAALGQKRLVITGGEPLMQGGPLAELLELLPDMTVEIET 123

Query: 119 NGTIEPPQ----GIDWICVSPKAGCD-------LKIKGGQE--------LKLVFPQVNVS 159
           NGT + P      ID   VSPK           L  +             K V  + +  
Sbjct: 124 NGTTKAPPRLDIRIDQYNVSPKLAHSGNPAELALITERLDSYALDDRAFFKFVIAEPSDV 183

Query: 160 PE-----NYIGFDFERFSLQP--MDGPFLEENTNLAISYCFQNPKWRLSVQTH 205
            E            +R  L P   D   L E     +  C ++  +R+S + H
Sbjct: 184 EEVLTLQRAHAIPAKRIFLMPEGTDSETLREREQWLVPLCLEH-GFRMSDRLH 235


>gi|282850491|ref|ZP_06259870.1| radical SAM domain protein [Veillonella parvula ATCC 17745]
 gi|282579984|gb|EFB85388.1| radical SAM domain protein [Veillonella parvula ATCC 17745]
          Length = 251

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 84/261 (32%), Gaps = 78/261 (29%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           ++ EIF ++ GEG   G +  F R   CN            +C +CDT +     +    
Sbjct: 2   NVIEIFASIDGEGSRQGLLTTFLRLHDCN-----------IRCSYCDTTYSYGIDSVFTE 50

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRG----------- 111
             V ++AD+IE              +TGGEPLLQ    V LI  LN+R            
Sbjct: 51  MTVAEVADVIESLG------NHRITITGGEPLLQEAAVVELIDELNRRKALKIQDSPSSQ 104

Query: 112 --------------------------FEIAVETNGTIEPPQGID--WICVSPKAGCDLK- 142
                                     ++  +ETNGTI P    D  W     K    L  
Sbjct: 105 SDLTRINDVDKDVDKFDKRKIPNISYYDFNIETNGTIIPSFHRDNVWFTYDYKTPSSLAE 164

Query: 143 -------IKGGQE---LKLVF---PQVNVSPENYIGFD-FERFSLQPMDGPFLEENTNLA 188
                   K   E   +K V      ++        +    +  + P+ G     +    
Sbjct: 165 ESMNIDIFKVATERDLIKFVVGSPEDLDCMRRIISKYSTVAQIYVSPVWGQIEAAS---I 221

Query: 189 ISYCFQNP--KWRLSVQTHKF 207
           I Y         R  +Q HKF
Sbjct: 222 IDYMKTYNLQNVRFQLQIHKF 242


>gi|14521605|ref|NP_127081.1| coenzyme PQQ synthesis protein III related [Pyrococcus abyssi GE5]
 gi|5458824|emb|CAB50311.1| Radical SAM family protein [Pyrococcus abyssi GE5]
          Length = 254

 Score =  113 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 94/259 (36%), Gaps = 69/259 (26%)

Query: 8   EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           EIF + QGEGG       GR  +F RF+GC+L           +C +CD+    I  +K 
Sbjct: 8   EIFNSWQGEGGSVEGSAFGRRQIFIRFAGCDL-----------RCSWCDSK-AFIDASKV 55

Query: 63  GRYNVD---------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQ 105
            R+ ++                L ++I+        +      TGGEP LQ+     L++
Sbjct: 56  KRWRIEVEPFSRKFEYRENPASLDEVIKVVLSLDTGDVHSISYTGGEPTLQIKGLKALMK 115

Query: 106 ALNKRGFEIAVETNGTIEPP----------QGIDWICVSPKAGCDLKIKGGQEL------ 149
            L + GF+  +ET+G                 +D    S KA  D +    +E+      
Sbjct: 116 ELKEVGFDNFLETHGGFPEFIREVAHLTDYASVDIKDESAKATKDWRSLVLREIESIRIL 175

Query: 150 ---------KLVFPQ----VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY----- 191
                    KLV  Q     NV     +       ++QP + P       L + Y     
Sbjct: 176 KGAGARVYAKLVVTQETKLENVRWYAELLKGLAPLAIQPRE-PIDIPMQKLMLLYNEASR 234

Query: 192 CFQNPKWRLSVQTHKFIGI 210
                   LS Q HK++ +
Sbjct: 235 ILGRKNVGLSFQVHKYLKV 253


>gi|242398853|ref|YP_002994277.1| Organic radical activating enzyme, radical SAM superfamily
           [Thermococcus sibiricus MM 739]
 gi|242265246|gb|ACS89928.1| Organic radical activating enzyme, radical SAM superfamily
           [Thermococcus sibiricus MM 739]
          Length = 251

 Score =  113 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 95/262 (36%), Gaps = 71/262 (27%)

Query: 6   IKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-FVGIQG 59
           + EIF + QGEGG       GR  +F RF+GC+L           +C +CD+  ++    
Sbjct: 3   LVEIFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------KCWWCDSANYIIASK 51

Query: 60  TKGGRYNVDQ-------------LADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLI 104
               RY V+                +++         +      TGGEP LQ      L+
Sbjct: 52  VPKWRYEVEPFTGKFEYKPNPANFEEVVSAILHLDTGDIHSISYTGGEPTLQTRNLSTLM 111

Query: 105 QALNKRGFEIAVETNGTIE-----PPQGIDWICVSPK-----AGCDLKIKGGQEL----- 149
           + +++ GF+  +ETNG+           +D+  V  K     A  D K    +E+     
Sbjct: 112 KKMHELGFKNFLETNGSRPERINDIAHLVDYASVDIKDATARATEDWKNLVLKEVESIRI 171

Query: 150 ----------KLVFPQVNVSPENYIGFDFERFS------LQPMDGPFLEENTNLAISY-- 191
                     KLV  Q   + E  + +  +         +QP + P     T L   Y  
Sbjct: 172 LKRSGVKTYAKLVVTQN--TKEEDVKWYAKLLKGQAPIVIQPRE-PIEMSQTQLMRLYNT 228

Query: 192 ---CFQNPKWRLSVQTHKFIGI 210
                      LS Q HK++ +
Sbjct: 229 AAKIMGRENVGLSFQVHKYLNV 250


>gi|218288587|ref|ZP_03492864.1| Radical SAM domain protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218241244|gb|EED08419.1| Radical SAM domain protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 250

 Score =  113 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 84/241 (34%), Gaps = 57/241 (23%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
              + EIF T++GEG  AG    F R   CNL           +C +CDT +        
Sbjct: 24  TLPMVEIFETVEGEGTKAGFPTTFVRVFHCNL-----------RCTWCDTPYSYAPERPA 72

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFE----IAV 116
               + ++A  +E              LTGGEPL+       LI+A+   G E    + +
Sbjct: 73  FHATLREIAQQVEAFGW------PNVCLTGGEPLIHRHKSQLLIEAI--AGIEWVRDVHI 124

Query: 117 ETNGTIEPPQGIDWICVS------PKAGCDLKIKGG-----------------QELKLVF 153
           ETNG I+    + +   S       +   D K+                     E+K V 
Sbjct: 125 ETNGAIDVRPFVRFRDASTRLREVVRFIVDYKLPASGEESRMIGEHLTSLSERDEVKFVI 184

Query: 154 -PQVNVSPENYIGFDF---ERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKF 207
             + + +    +           + P+       +    ++   ++     +L++Q HK 
Sbjct: 185 ADERDFARALEVMEAHPTRATILMSPVWETMPPRDL---VALILKHRLRDVKLNLQLHKV 241

Query: 208 I 208
           I
Sbjct: 242 I 242


>gi|134299611|ref|YP_001113107.1| radical SAM domain-containing protein [Desulfotomaculum reducens
           MI-1]
 gi|134052311|gb|ABO50282.1| Radical SAM domain protein [Desulfotomaculum reducens MI-1]
          Length = 247

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 30/164 (18%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT------DFVGIQGT 60
            EIF ++QGEG + G   +F RF+GCN            +C FCDT      ++  ++ T
Sbjct: 7   VEIFSSVQGEGPYVGLRQIFIRFAGCN-----------WKCAFCDTPTNPRPEYFTMEKT 55

Query: 61  KGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKR 110
            G R           ++L++LI++ +           LTGGEPL+  D    L+ AL   
Sbjct: 56  PGQRDFIQVANPVKPERLSELIKQYY--NLSHHHSISLTGGEPLIYHDYITRLVPALQGT 113

Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
              I +ETNGT+ P +    I +      D+K++   + K  + 
Sbjct: 114 RKGIYLETNGTL-PEELASVINLCNMISMDIKLESATKEKTPWE 156


>gi|315636551|ref|ZP_07891787.1| radical SAM domain protein [Arcobacter butzleri JV22]
 gi|315479200|gb|EFU69897.1| radical SAM domain protein [Arcobacter butzleri JV22]
          Length = 191

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 60/158 (37%), Gaps = 20/158 (12%)

Query: 3   LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGR-----EQDRLSAQCRFCDTDFVG 56
           +  I EIF  T+QGEG   G  ++F RF  CN          E      +C  CD+ +  
Sbjct: 1   MLEINEIFGPTIQGEGKLVGTPSIFIRFGKCNFSCTGFGVIYETPSGIKKCA-CDSYYAV 59

Query: 57  IQGTKGGRYNVDQLADLIEEQWIT----GEKEGRYCVLTGGEPLLQVDVPLIQALNKR-- 110
            +  K          D++ E                V+TGGEPLL  +    Q L K   
Sbjct: 60  DKEFKDTWTKYQSYNDIVAEVDNLISTYNYNYKIDIVITGGEPLLYWNKKEFQKLLKHYI 119

Query: 111 --GFEIAVETNGTIEPPQGIDW-----ICVSPKAGCDL 141
             G ++ +ETN ++      D+       +S K    L
Sbjct: 120 ENGHKVTIETNASLNINFEFDYQKEILFSMSVKLSNSL 157


>gi|56963892|ref|YP_175623.1| organic radical activating enzyme [Bacillus clausii KSM-K16]
 gi|56910135|dbj|BAD64662.1| organic radical activating enzyme [Bacillus clausii KSM-K16]
          Length = 217

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 75/223 (33%), Gaps = 48/223 (21%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R  GC+            +CR+CD+ F      K    + +++ + ++    
Sbjct: 2   IGQKTMFVRTGGCDY-----------RCRWCDSAFTWDGSEKSEPLSAEEIIERLDSLCE 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
            G     +  ++GG P +   +  L+  LN++G   A+ET G+I       +D + VSPK
Sbjct: 51  NGYS---HVTISGGNPAIHKGIGELVALLNEKGVATAIETQGSIFQCWINRVDEVTVSPK 107

Query: 137 AGCDLKIKGGQELKLVFPQVNV------------SPENYIGFDFER-----FSLQ----- 174
                      +L L   Q+              +   Y     +R     F LQ     
Sbjct: 108 PPSSGMETDWTKLDLFLQQLQAPAVSLKVVVFDDADYQYAKHVHKRYPTVPFYLQTGNED 167

Query: 175 ------PMDGPFLEENTNLAISYCFQN---PKWRLSVQTHKFI 208
                 P             +     +      R+  Q H ++
Sbjct: 168 FAEKEDPRFLEKRMGAYEALVEKALADKEMNNVRVLPQLHTWL 210


>gi|87200860|ref|YP_498117.1| radical SAM family protein [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136541|gb|ABD27283.1| Radical SAM [Novosphingobium aromaticivorans DSM 12444]
          Length = 247

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 64/151 (42%), Gaps = 30/151 (19%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           E+F +LQGEG   GR +VF R S CNL            CR+CDT +   +     R + 
Sbjct: 13  EVFSSLQGEGPGMGRPSVFVRLSRCNL-----------ACRWCDTAYTW-RFAGDNRPHR 60

Query: 68  DQLA------DLIEEQWITGE----KEGRYCVLTGGEPLLQ----VDVPLIQALNKRGFE 113
           D++A       L+  +  T            V+TGGEPLLQ      +  +    +    
Sbjct: 61  DEVAFEKAGNQLVMSEEDTAALILVHPEDRLVITGGEPLLQGAALARLVALLKAERPALH 120

Query: 114 IAVETNGTIEPPQG----IDWICVSPKAGCD 140
           + +ETNGT+         +D   VSPK    
Sbjct: 121 VEIETNGTVAVHPALDPLVDQFNVSPKLSHS 151


>gi|315645649|ref|ZP_07898773.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Paenibacillus vortex V453]
 gi|315279127|gb|EFU42437.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
           [Paenibacillus vortex V453]
          Length = 224

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 15/144 (10%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            GR  +F R +GC+            +C +CD+ F    G+     +     D+ +E + 
Sbjct: 3   VGRKTMFVRTAGCDY-----------RCSWCDSAFTW-DGSAKDSISHMSADDIWQELYR 50

Query: 80  TGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  L+GG P LL     L+  L++ G  +AVET G+   +    +D + +SPK
Sbjct: 51  LGGERFDHVTLSGGNPALLSQLGSLVNELHRHGITVAVETQGSRWQDWLNEVDEVTISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQVNVSP 160
                      +L  +  +++  P
Sbjct: 111 PPSSGMATDWGKLDDIISRLSGRP 134


>gi|315452915|ref|YP_004073185.1| Radical SAM domain protein [Helicobacter felis ATCC 49179]
 gi|315131967|emb|CBY82595.1| Radical SAM domain protein [Helicobacter felis ATCC 49179]
          Length = 242

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 62/148 (41%), Gaps = 13/148 (8%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQ 58
                 E F +LQGEG   G+ A+F R  GCN      G + D    +   CD+ +    
Sbjct: 1   MTLPFVESFYSLQGEGSCVGQPAIFIRLGGCNFKCTGFGVQSDIEGKKVLGCDSAYAIYP 60

Query: 59  GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEI 114
             K    N  Q  +L+++            VLTGGEP L    P     ++ L KRG  I
Sbjct: 61  NAKWQYLNSTQ--ELLDKLPPFNSNRPPLIVLTGGEPSLHFKNPILLEALEILLKRGHGI 118

Query: 115 AVETNGTIE----PPQGIDWICVSPKAG 138
            VE+NG++     PP       +SPK  
Sbjct: 119 WVESNGSVFFDFNPPLDSLHFTLSPKLS 146


>gi|325294503|ref|YP_004281017.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325064951|gb|ADY72958.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 224

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 99/242 (40%), Gaps = 52/242 (21%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
              +I E+F +LQGEG   G  + F R SGC           S  C++CDT +      K
Sbjct: 3   SSIAISELFTSLQGEGLDLGAPSFFIRISGC-----------SIGCKYCDTKYSW---KK 48

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRG--FEIAVET 118
           G  +++D L   + +  I         ++TGGEP+ + ++  LI+ L+      +I +ET
Sbjct: 49  GKLWDIDSLVKEVLKSKIPE------VIVTGGEPVEEKNLSILIKRLSDLETVRKITLET 102

Query: 119 NGTI---EPPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
            G I   +       I +SPK    G D   +  ++    + QV +    Y   D E   
Sbjct: 103 CGHIFRDDLKYPKLKIVLSPKPPTMGVDFPTETLEKFLTTYEQVYIKFAAYDQKDLEVIK 162

Query: 173 ---------------LQPMDGPFLEEN--TNLAISYCFQNPKW------RLSVQTHKFIG 209
                          +QP++ PF + +  +         + K+      ++  Q HK IG
Sbjct: 163 EFAYKNKNLIRAPIVIQPLEVPFEDYSYTSKRIFELVISDRKFINDFEIKIIPQIHKLIG 222

Query: 210 IR 211
           ++
Sbjct: 223 LK 224


>gi|138894535|ref|YP_001124988.1| organic radical activating protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266048|gb|ABO66243.1| Organic radical activating enzyme [Geobacillus thermodenitrificans
           NG80-2]
          Length = 225

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 15/124 (12%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+            +CR+CD+ F    G+           D+ +    
Sbjct: 3   IGQKTMFVRTAGCDY-----------RCRWCDSAFTW-DGSAKEEIEQLTAEDIWQRLEA 50

Query: 80  TGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +  R+  ++GG P LL     L+  L+++G ++AVET G+   +    +D + +SPK
Sbjct: 51  IGGRRFRHVTISGGNPLLLAALGELVALLHEKGVQVAVETQGSRWQDWLLDVDDVTISPK 110

Query: 137 AGCD 140
               
Sbjct: 111 PPSS 114


>gi|169831395|ref|YP_001717377.1| radical SAM domain-containing protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638239|gb|ACA59745.1| Radical SAM domain protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 246

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 85/251 (33%), Gaps = 56/251 (22%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-----FVGIQG 59
            + E+F ++QGEG + G   +F RF+GCNL           QC +CDT         ++ 
Sbjct: 6   PVTEVFTSVQGEGPYLGCRHMFVRFAGCNL-----------QCAYCDTPAPAGRRCRVEN 54

Query: 60  TKGGRY-----NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGF 112
           T G R      N   +  L++              LTGGEPLL  D     +    + G 
Sbjct: 55  TPGRRVFTWYPNPVTVQMLLDWTSRAVAPHFHALALTGGEPLLHADFLESFLVGFREYGG 114

Query: 113 EIAVETNGTIE-----PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF- 166
              +ETNGT+        + +D + +  K          +     F +       ++   
Sbjct: 115 RCYLETNGTLPEAMKRLARLVDIVAMDVKLPSMTGFPFPEAEHRRFLEAIGPAHAFVKVV 174

Query: 167 ------DFER---------------FSLQPMD-----GPFLEENTNLAISYCFQN-PKWR 199
                 D E                  LQP+       P   E        C    P  R
Sbjct: 175 VGSETTDAELDAVCALLSAGAGRTMLVLQPVTPVSGVRPAPPERLLEMQERCLARLPDVR 234

Query: 200 LSVQTHKFIGI 210
           +  Q H+ +G+
Sbjct: 235 VIPQVHRTLGV 245


>gi|51244018|ref|YP_063902.1| hypothetical protein DP0166 [Desulfotalea psychrophila LSv54]
 gi|50875055|emb|CAG34895.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 212

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 55/215 (25%), Positives = 85/215 (39%), Gaps = 35/215 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EIF ++QGEG   GR A F R SGC          +   C +CDT         G   
Sbjct: 8   VHEIFTSIQGEGPLMGRPASFLRLSGC----------VEPLCPWCDTKQAWG---PGKTI 54

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIAVETNGTI 122
           +V+++A  +           R C++TGGEP LQ +     L + L   G EI  ET+G +
Sbjct: 55  SVEEVASRLIALG------NRLCIITGGEPFLQWESGLNLLERLLLTEGIEIQYETSGKV 108

Query: 123 EPPQGID-WICVSPKAGCDL------KIKGGQELKLVFPQVNVSPENYI---GFDFERFS 172
             P     +   SPK   ++        +     K V        + +I     D +R  
Sbjct: 109 LIPADCRGFKVCSPKYLANIWHYLPENSERADCFKFVAGDELKPVQEFITKHNLDQDRVW 168

Query: 173 LQPMDGPFLEENT--NLAISYCFQNPKWRLSVQTH 205
           + PM     E+ T       +C ++  +  S + H
Sbjct: 169 IMPMGTGRDEQLTRSPKIWEFCVKH-HYNFSPRLH 202


>gi|197117706|ref|YP_002138133.1| 7-carboxy-7-deazaguanine synthase [Geobacter bemidjiensis Bem]
 gi|197087066|gb|ACH38337.1| 7-carboxy-7-deazaguanine synthase [Geobacter bemidjiensis Bem]
          Length = 251

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 62/258 (24%), Positives = 92/258 (35%), Gaps = 69/258 (26%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-------DFVGI 57
            + E F ++QGEG   G   VF R +GCNL            C FCDT           +
Sbjct: 8   PLVECFSSIQGEGVLVGLRQVFLRLAGCNL-----------NCSFCDTPGMSETPKECLL 56

Query: 58  QGTKGGR--------YNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVD-----VPL 103
           + T G R          ++++A L+E  W  G     +   +TGGEPLL        +P+
Sbjct: 57  ELTPGRRDFFKVPNPVGLERVATLLES-WTEGWPGIHHSISVTGGEPLLYAKELKEWLPV 115

Query: 104 IQALNKRGFEIAVETNGTI-----EPPQGIDWICVSPKAGC---------------DLKI 143
           ++ L      + +ETNGT+          +D+I +  K                  +   
Sbjct: 116 LRTL----LPVYLETNGTLAHQLAPLMPHLDYIGMDFKLPSTSGCVNLWDAHRAFLETAS 171

Query: 144 KGGQELKLVFPQVNVSPENYIGFDFE-------RFSLQPM---DGPFLEENTNLAI--SY 191
           K    +K+V  Q     E                  LQPM    G        +      
Sbjct: 172 KTSVFVKIVIDQSTEDWEIERSCQMIMAVNPGIPLILQPMTLGSGAVALPALRMLELQEL 231

Query: 192 CFQNPKWRLSVQTHKFIG 209
           C    + R+  QTHKF+G
Sbjct: 232 CSGLNEVRVIPQTHKFMG 249


>gi|57641133|ref|YP_183611.1| organic radical activating protein [Thermococcus kodakarensis KOD1]
 gi|57159457|dbj|BAD85387.1| organic radical activating enzyme, radical SAM superfamily
           [Thermococcus kodakarensis KOD1]
          Length = 253

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 90/258 (34%), Gaps = 67/258 (25%)

Query: 8   EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTK 61
           E+F + QGEGG       GR  +F RF+GC+L            C +CD+ +++      
Sbjct: 7   EVFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------HCAWCDSREYIDASRVS 55

Query: 62  GGRYNV-------------DQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQA 106
             RY V               + +++E        +      TGGEP LQ    + L++ 
Sbjct: 56  SWRYEVKPFTGRFEYRPNPASVEEVVEAVLRLDTGDIHSISYTGGEPTLQVKPLMALMER 115

Query: 107 LNKRGFEIAVETNGTIE-----PPQGIDWICV-----SPKAGCDLKIKGGQELKLVFPQV 156
           + + GF+  +ET+G +           D+  V     S KA  D K    +E++ +    
Sbjct: 116 MKELGFDNFLETHGGLPELIRDVAPLTDYASVDIKDESAKATEDWKGLVLREVESIRILK 175

Query: 157 NVSPENYIGFD-------------------FERFSLQPMDGPFLEENTNLAISY-----C 192
               + Y                            +QP +   + +   L   Y      
Sbjct: 176 EAGAKTYAKLVVTSETKVENVQWYASLLKGLAPLVIQPREPIEVSQA-KLMEFYREAARI 234

Query: 193 FQNPKWRLSVQTHKFIGI 210
                  LS Q HK++ +
Sbjct: 235 MGRKNVGLSFQVHKYLNV 252


>gi|115378070|ref|ZP_01465248.1| radical activating enzyme [Stigmatella aurantiaca DW4/3-1]
 gi|115364909|gb|EAU63966.1| radical activating enzyme [Stigmatella aurantiaca DW4/3-1]
          Length = 194

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 73/208 (35%), Gaps = 45/208 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
            +  F R +GC+L           +C +CD++F    GT   R    Q+ + ++      
Sbjct: 1   MLCAFVRLTGCHL-----------RCTYCDSEFAFRGGT---RMPNAQVVEQVKAL---- 42

Query: 82  EKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE---PPQG----IDWICV 133
                   +TGGEPLLQ  V PL++AL   G  + +ET+G I+    P      +D    
Sbjct: 43  --RTPMVEITGGEPLLQPGVYPLMEALLAEGLTVLLETSGAIDVRLVPPAVHKIVDMKTP 100

Query: 134 SPKAGCDLKIKGG------QELKLV--------FPQVNVSPENYIGFDFERFSLQPMDGP 179
           S        ++         E+K V        + +  ++        F       +   
Sbjct: 101 SSGESDRNDVRNFSSMNARDEMKFVIGSREDYEWSKALIAEHGLATKPFAMLF-STVFDK 159

Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKF 207
                  LA          R  +Q HK+
Sbjct: 160 LHPR--ELAEWVIADRLPVRFQLQMHKY 185


>gi|157738262|ref|YP_001490946.1| radical SAM domain-containing protein [Arcobacter butzleri RM4018]
 gi|157700116|gb|ABV68276.1| radical SAM domain protein [Arcobacter butzleri RM4018]
          Length = 254

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 18/157 (11%)

Query: 3   LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRF-CDTDFVGI 57
           +  I EIF  T+QGEG   G  ++F RF  CN      G   +  S   ++ CD+ +   
Sbjct: 1   MLEINEIFGPTIQGEGKLVGTPSIFIRFGKCNFSCTGFGVVYETPSGIKKYACDSYYAVD 60

Query: 58  QGTKGGRYNVDQLADLIEEQWIT----GEKEGRYCVLTGGEPLLQVDVPLIQALNKR--- 110
           +  K          D++ E                V+TGGEPLL  +    Q L K    
Sbjct: 61  KEFKDTWTKYQSYNDIVAEVDNLISTYNYNYKIDIVITGGEPLLYWNKKEFQKLLKHYIE 120

Query: 111 -GFEIAVETNGTIEPPQGIDW-----ICVSPKAGCDL 141
            G ++ +ETN ++      D+       +S K    L
Sbjct: 121 NGHKVTIETNASLNINFEFDYQKEILFSMSVKLSNSL 157


>gi|253701563|ref|YP_003022752.1| radical SAM protein [Geobacter sp. M21]
 gi|251776413|gb|ACT18994.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 251

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/259 (23%), Positives = 92/259 (35%), Gaps = 71/259 (27%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-------DFVGI 57
            + E F ++QGEG   G   VF R +GCNL            C FCDT           +
Sbjct: 8   PLVECFSSIQGEGVLVGLRQVFLRLAGCNL-----------NCSFCDTPGMSETPKECLL 56

Query: 58  QGTKGGR--------YNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVD-----VPL 103
           + T G R          ++++A L+E  W  G     +   +TGGEPLL        +P+
Sbjct: 57  ELTPGRRDFFRVPNPVGLERVATLLES-WTAGWPGIHHSISVTGGEPLLYAAELKEWLPV 115

Query: 104 IQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDL-------KIKGGQE--- 148
           ++ L      + +ETNGT+          +D+I +  K              +   E   
Sbjct: 116 LRTL----LPVYLETNGTLPDQLAPLMPHLDYIGMDFKLPSTSGCTPLWDAHRAFLETAS 171

Query: 149 -----LKLVFPQ--VNVSPENYIGFDFER-----FSLQPMDGPFLE------ENTNLAIS 190
                +K+V  Q   +   E                LQPM                L   
Sbjct: 172 KTRVFVKIVVDQGTEDWEIERSCQLIMAVNPGIPLILQPMTLANGTVALPALRMLELQ-E 230

Query: 191 YCFQNPKWRLSVQTHKFIG 209
            C    + R+  QTHKF+G
Sbjct: 231 LCSGLNEVRVIPQTHKFMG 249


>gi|183222780|ref|YP_001840776.1| putative organic radical activating protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189912811|ref|YP_001964366.1| organic radical activating enzyme [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167777487|gb|ABZ95788.1| Organic radical activating enzyme [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167781202|gb|ABZ99500.1| Putative organic radical activating enzyme [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 236

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 93/244 (38%), Gaps = 53/244 (21%)

Query: 3   LY-SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
           +Y  I EI+ ++ GEG   G   VF RF+GC+L  G+   R      +CDT +  +   +
Sbjct: 1   MYGKIHEIYSSISGEGISQGIPTVFVRFAGCSLRCGKTDTRSL----WCDTPYA-LGPNQ 55

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK--RGFEIA---- 115
           G    +  + D I     T   +    +LTGGEPL   +  L  ++ +    F       
Sbjct: 56  GETKPLSTIMDEIVALDPTHGYQ---ILLTGGEPLEGKNRDLSISIAESIHSFRTHNDKP 112

Query: 116 -----VETNGTIEPPQGIDWICVSP--KAGCDLKIKG-GQELKLVFPQVNVSPENYIGFD 167
                VETNG+       + I + P      D K+ G G E ++      +  + +   D
Sbjct: 113 YPSSRVETNGS-------EKITLDPFFIFTMDYKLPGSGMEGRMDLENFQILEKRHNSLD 165

Query: 168 FERFSL---------------QPM------DGPFLEENTNLAISYCF--QNPKWRLSVQT 204
             +F +               Q +           E +    + +      PK RLS+Q 
Sbjct: 166 EIKFVVRDRIDFERSIEVIREQKIQTNILYSPVHGEVDAKELVEWIKIDNPPKGRLSLQI 225

Query: 205 HKFI 208
           HK +
Sbjct: 226 HKVL 229


>gi|240103382|ref|YP_002959691.1| Radical SAM protein [Thermococcus gammatolerans EJ3]
 gi|239910936|gb|ACS33827.1| Radical SAM protein [Thermococcus gammatolerans EJ3]
          Length = 253

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 101/267 (37%), Gaps = 72/267 (26%)

Query: 1   MKLYSIKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DF 54
           MKL  + E+F + QGEGG       GR  +F RF+GC+L            C +CD+ ++
Sbjct: 1   MKLI-MAEVFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------NCAWCDSREY 48

Query: 55  VGIQGTKGGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--V 99
           +        RY V+             +L D+++        +      TGGEP LQ   
Sbjct: 49  IDPSRVSRWRYEVEPFTAKFEYKPNPAELEDVVDAVLRLDTGDIHSISYTGGEPTLQVKP 108

Query: 100 DVPLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGC--------DLKIKGG 146
              L++ +   GF+  +ET+G +           D+  V  K            L ++  
Sbjct: 109 LKALMERMKSLGFDNFLETHGGLPELIEEVAPLTDYASVDIKDETARATEDWRSLVLREV 168

Query: 147 QELKL-------VFPQVNVSPENYIGFDFERFS-----------LQP-----MDGPFLEE 183
           + +++       V+ ++ V+PE     +  R+            +QP     +    L +
Sbjct: 169 ESIRILREAGVKVYAKLVVTPET--KIENVRWYAELLKGLAPLVIQPREPIEICQRRLMD 226

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
               A +         LS Q HK++ +
Sbjct: 227 LYREA-ALILGRKNVGLSFQVHKYLNV 252


>gi|322418702|ref|YP_004197925.1| Radical SAM domain-containing protein [Geobacter sp. M18]
 gi|320125089|gb|ADW12649.1| Radical SAM domain protein [Geobacter sp. M18]
          Length = 250

 Score =  108 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 70/263 (26%), Positives = 93/263 (35%), Gaps = 79/263 (30%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-------DFVGI 57
            + E F ++QGEG   G   VF RFSGCNL            C FCDT       D   +
Sbjct: 7   PLVECFSSIQGEGVLVGLRQVFLRFSGCNL-----------NCSFCDTPGMTAVPDECLL 55

Query: 58  QGTKGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-- 107
           + T G R          ++++A LIE              +TGGEPLL     L + L  
Sbjct: 56  ELTPGRRDFFKVPNPVTLERVATLIESWTAAWPGIHHSISVTGGEPLLF-GTLLEEWLPV 114

Query: 108 NKRGFEIAVETNGTI-----EPPQGIDWICVSPKAGCDLKIK---GGQEL---------- 149
            ++   I +ETNGT+          +D        G D+K+    G  EL          
Sbjct: 115 LRKFLPIYLETNGTLPEALAPLIPHLD------SVGMDIKLPSSSGCPELWDQHRAFLEL 168

Query: 150 --------KLVFPQVNVSPEN------YIGFDFER-FSLQPMDGPFLE------ENTNLA 188
                   K+V  Q     E           D E    LQPM                L 
Sbjct: 169 AAMKEVFVKIVVDQSTQDWEIQRSCAMIAAVDPEIPLILQPMTRENGSIGITPLRTLELQ 228

Query: 189 ISYCFQNP--KWRLSVQTHKFIG 209
                 +P  + R+  QTHKF+G
Sbjct: 229 E---LTSPLKEVRVIPQTHKFMG 248


>gi|260887262|ref|ZP_05898525.1| radical SAM domain protein [Selenomonas sputigena ATCC 35185]
 gi|330838981|ref|YP_004413561.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185]
 gi|260863324|gb|EEX77824.1| radical SAM domain protein [Selenomonas sputigena ATCC 35185]
 gi|329746745|gb|AEC00102.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185]
          Length = 241

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 63/155 (40%), Gaps = 30/155 (19%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF---------- 54
           +I EIF ++QGEG + G   VF RF+GCN            +C FCDT F          
Sbjct: 4   NILEIFSSIQGEGKYIGARQVFLRFAGCN-----------IKCSFCDTAFQPAASCRVEA 52

Query: 55  ---VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR- 110
               G         +V ++A  I    +          LTGGEPLL      I+AL    
Sbjct: 53  IPGCGEYEELPNPLSVQEVAARIRAFVV--PVRHHSISLTGGEPLLHAT--FIRALASEV 108

Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
                +ETNGT+   +    + ++     D+K+  
Sbjct: 109 NVPFFLETNGTLY-EEMASILDITSYISMDIKLPS 142


>gi|326203402|ref|ZP_08193266.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325986222|gb|EGD47054.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 249

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 92/262 (35%), Gaps = 84/262 (32%)

Query: 2   KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-GT 60
           +   I EIF ++ GEG  AG V  F R +GCNL           +C +CDT +   + G 
Sbjct: 9   RRIPIIEIFNSVSGEGISAGSVVTFVRAAGCNL-----------RCNYCDTKYSYNELGN 57

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL----LQVDVPLIQALNKRGFEIAV 116
                  D + +++E          +  + TGGEPL     +  +PL   L  +GF++ +
Sbjct: 58  GIQVLKPDGIVNILES------YNCKNVLCTGGEPLELNKAKRYLPL--YLASKGFKVRI 109

Query: 117 ETNGTIEP----------PQGIDWICVSPKAGCDLKIKGG------------------QE 148
           ETNG+                I ++ +      D+K                       E
Sbjct: 110 ETNGSCPLYSKTELNDFAVDNISFLTL--NYALDVKCPDSGMSNYNIYNENFELLGPEDE 167

Query: 149 LKLVFPQVNVSPENYIGFDFERFS-----LQ---------PMDGPFLEENTNLAISYCFQ 194
           +K +     V     + F FE        L          P+ G          ++   +
Sbjct: 168 IKFI-----VGTRRDLKFAFETIKEYSNILSKTGVTINFLPVFGKLEA---IEIVNMLKE 219

Query: 195 N--------PKWRLSVQTHKFI 208
           N           RLS+Q HKFI
Sbjct: 220 NNAYFEKYGLNVRLSLQIHKFI 241


>gi|95929552|ref|ZP_01312294.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
 gi|95134249|gb|EAT15906.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
          Length = 251

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 86/257 (33%), Gaps = 65/257 (25%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-----VGIQ 58
             + E+F ++QGEG   G   VF R +GCNL            C +CDTDF       I+
Sbjct: 9   LPVVELFSSIQGEGPLVGCRQVFLRLAGCNL-----------DCAYCDTDFQPSKCARIE 57

Query: 59  GTKGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110
              G              +L   +               LTGGEPLL  +  L   L + 
Sbjct: 58  TQPGSEQFLYWENPLESTRLLAHLSTWKHQQPHLHHSLSLTGGEPLLHAE-ALKAWLPQL 116

Query: 111 G--FEIAVETNGTIE-----PPQGIDWICVSPKAGCD---------------LKIKGGQE 148
              F I +ETNGT+          ++W+ +  K                   + +K    
Sbjct: 117 STLFPIQLETNGTLPQALQLVIDQVEWVVMDIKLESQTGEPTPWAQHGEFLRVAVKRSCC 176

Query: 149 LKLVF-------PQVNVSPENYIGFDFERFSLQPM--------DGPFLEENTNLAISYCF 193
           +KLV          V  +             LQP         +G  L +   L      
Sbjct: 177 VKLVVGPGTSESELVQAAQLVRDNAPDSEVFLQPCTVAGQCSLNGRILLQWQALIAE--- 233

Query: 194 QNPKWRLSVQTHKFIGI 210
           Q  + R+  QTH F+ +
Sbjct: 234 QGVRVRVVPQTHCFLAV 250


>gi|20092988|ref|NP_619063.1| hypothetical protein MA4197 [Methanosarcina acetivorans C2A]
 gi|19918305|gb|AAM07543.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 255

 Score =  107 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 88/254 (34%), Gaps = 67/254 (26%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           SIKEIF ++QGEG + G    F RFSGCNL            C +CDT+F  +       
Sbjct: 10  SIKEIFCSVQGEGPYVGVRQAFVRFSGCNL-----------NCNYCDTNFENLGTCDYEI 58

Query: 65  YNVDQLADLI--------EEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
              + + + I         E  +   K+     LTGGEPLL  D   I+ L      + +
Sbjct: 59  IEGNGIFEKIPNPINVEKLESLLQPFKKLHSVSLTGGEPLLHAD--FIEKLK-LPVPLYL 115

Query: 117 ETNGTIE-----PPQGIDWICVSPKAGCDLK-------------------IKGGQEL--- 149
           E+N T+        + I ++    K    L+                   +    +L   
Sbjct: 116 ESNMTLPEQARKLRENITYVAGDFKLPEALREIRPETRDMHVENTIKCFSLLKKNKLRDC 175

Query: 150 --KLVF-----PQVNVSPENYIGFDFERFSLQPM----DGPFLEENTNLAISYCFQNPK- 197
             K+V      P+  V     I  D     LQP             T  ++    +  K 
Sbjct: 176 FCKIVVGRDTRPETVVLAAEAIASDVSCIILQPETPVGSAVRTPRFTQASVQTILKLQKT 235

Query: 198 ------WRLSVQTH 205
                  R+  QTH
Sbjct: 236 LLELADTRIIPQTH 249


>gi|229160394|ref|ZP_04288392.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus R309803]
 gi|228623118|gb|EEK79946.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus R309803]
          Length = 220

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 15/140 (10%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDIWNELVA 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P L  ++  L+  L + G   A+ET G+   +    ID + +SPK
Sbjct: 51  IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQV 156
                     Q+L  V  ++
Sbjct: 111 PPSSTMHTDFQKLDAVIQKL 130


>gi|296109842|ref|YP_003616791.1| Radical SAM domain protein [Methanocaldococcus infernus ME]
 gi|295434656|gb|ADG13827.1| Radical SAM domain protein [Methanocaldococcus infernus ME]
          Length = 234

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 89/252 (35%), Gaps = 67/252 (26%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-----DFVGIQGT 60
           I EIF ++ GEG + GR  +F RF  CNL            C +CD      + V ++  
Sbjct: 2   ITEIFSSIMGEGKYIGRRYIFIRFPKCNL-----------NCIYCDERKNYKNRVEVEPG 50

Query: 61  KG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVE 117
            G      +  + D+++E       +      TGGEPLL      L + L K+GF   +E
Sbjct: 51  SGVFEEREIRDVKDIVKEVERLKTDDLFAISFTGGEPLLFDKLDELNKLLKKKGFRTHLE 110

Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKG------------GQELKLVFPQ---------- 155
           +NGT+        I        D+K+KG             + +K+++            
Sbjct: 111 SNGTLPERLVFTDI-----GSIDIKLKGHIPNYKEVYNKELESIKILYENGVDVYAKVVI 165

Query: 156 ---VNVSPENYIGFDFERF-----SLQP---------MDGPFLEENTNLAISYCFQNPKW 198
                V     +  D          LQP         +    + +    A  Y       
Sbjct: 166 LSSNTVEEIEKVAKDLSEIGSILLCLQPVTPTKDIKGVSKKVIFKMMEKAGKYV----DV 221

Query: 199 RLSVQTHKFIGI 210
             ++Q HK++ I
Sbjct: 222 MTTIQMHKYMKI 233


>gi|228951823|ref|ZP_04113921.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228807746|gb|EEM54267.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 220

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 15/140 (10%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+ +E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P L  ++  L+  L + G   A+ET G+   +    ID + +SPK
Sbjct: 51  IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQV 156
                      +L  +  ++
Sbjct: 111 PPSSTMKTDFHKLDAIIEKL 130


>gi|167630604|ref|YP_001681103.1| radical sam domain protein, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167593344|gb|ABZ85092.1| radical sam domain protein, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 246

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 62/258 (24%), Positives = 91/258 (35%), Gaps = 75/258 (29%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           + EI ++ QGEG   G   VF RF GCNL            C +CDT      G++G R 
Sbjct: 10  LVEIMVSAQGEGPWIGCRQVFLRFFGCNL-----------SCSYCDTP-----GSRGPRP 53

Query: 66  NVDQL-----------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQA 106
           +  ++                  D + E             LTGGEPLL V+    LI  
Sbjct: 54  SACRIEKEPGSSLFDLWENPVTVDRVAEYLCH-TVPIHSVSLTGGEPLLHVEFIQQLIPL 112

Query: 107 LNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCD-----------LKIKGGQELK 150
           L  +  ++ +ETNGT+          +D++ +  K   D           +  +    +K
Sbjct: 113 LGAQRPDLYLETNGTLPEQLALIVDDLDYVSMDLKTPLDNHWDLHRLFLRIASRKKGYVK 172

Query: 151 LVFP-----QVNVSPENYIGFDFERF--SLQPMDGPFLEENT-----------NLAISYC 192
           +V        V       I  +   F   LQP+ G      T            LAI   
Sbjct: 173 IVITPTTALDVVQRAAAIIEEEAPHFPLVLQPVTGKTGLPLTVPGHLLNLQGAALAI--- 229

Query: 193 FQNPKWRLSVQTHKFIGI 210
             +   R+  Q H  +GI
Sbjct: 230 --HRDVRIIPQVHPILGI 245


>gi|158335495|ref|YP_001516667.1| radical SAM domain-containing protein [Acaryochloris marina
           MBIC11017]
 gi|158305736|gb|ABW27353.1| radical SAM domain protein [Acaryochloris marina MBIC11017]
          Length = 256

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/269 (22%), Positives = 98/269 (36%), Gaps = 86/269 (31%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------- 57
           ++ EIF  +QGEG + G   +F RF GC+L           +C FCD+            
Sbjct: 8   NLVEIFSAIQGEGLNVGTRQIFIRFGGCDL-----------RCHFCDSAHTWTPKSSCQI 56

Query: 58  QGTKGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-----VDVPLI 104
           + T G R          + Q+ + +++Q + G  +     LTGGEPLLQ       +PL+
Sbjct: 57  EKTPGCRDFARYPNPVTLPQILEWVQDQDLPGMHDS--ISLTGGEPLLQVAFLQNLLPLL 114

Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWICVSP---KAGCDLKIKG------------GQEL 149
           +   +    I +ET G    P+ +D   + P     G DLK+                EL
Sbjct: 115 R--QQTSLPIYLETGGHH--PEALD--PLLPHLDSVGMDLKLPSVSGENHWPQHRQSLEL 168

Query: 150 ----------------KLVFPQVNVSPENYIGFDFERF-SLQPM----DGPFLEENTNLA 188
                           K  +P++  + +            LQP+        ++  T   
Sbjct: 169 CHQAHIDVFCKLIISEKTDWPELVQAAQMVADISPTVLMFLQPVTPLTAQHPVQPPTP-- 226

Query: 189 ISYCFQ--------NPKWRLSVQTHKFIG 209
                           + R+  QTHKF+G
Sbjct: 227 -DQVLAWQGQLKQMGRQIRVVPQTHKFLG 254


>gi|254173693|ref|ZP_04880365.1| organic radical activating enzyme, radical SAM superfamily
           [Thermococcus sp. AM4]
 gi|214032385|gb|EEB73215.1| organic radical activating enzyme, radical SAM superfamily
           [Thermococcus sp. AM4]
          Length = 253

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 97/260 (37%), Gaps = 71/260 (27%)

Query: 8   EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTK 61
           E+F + QGEGG       GR  +F RF+GC+L            C +CD+ +++      
Sbjct: 7   EVFNSWQGEGGSVEGSAFGRRQIFIRFAGCDL-----------NCAWCDSREYIDASRVS 55

Query: 62  GGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQA 106
             RY V+              L +++E        +      TGGEP LQ      L++ 
Sbjct: 56  RWRYEVEPFTGKFEYRPNPASLDEVVEAVTRLDTGDIHSISYTGGEPTLQVKPLKALMEE 115

Query: 107 LNKRGFEIAVETNGTIEPP----------QGIDWICVSPKAGCD---LKIKGGQELKL-- 151
           +   GF+  +ET+G +               +D    + KA  D   L ++  + +++  
Sbjct: 116 MKSLGFDNFLETHGGLPELIREVAHLTDYASVDIKDETAKATEDWRSLVLREVESIRILK 175

Query: 152 -----VFPQVNVSPENYIGFDFERFS-----------LQP-----MDGPFLEENTNLAIS 190
                V+ ++ V+ E     +  R+            +QP     +    L E    A +
Sbjct: 176 EAGAKVYAKLVVTSET--KLENVRWYAELLRGLAPLVIQPREPIEIGQEKLMELYREA-A 232

Query: 191 YCFQNPKWRLSVQTHKFIGI 210
                    LS Q HK++ +
Sbjct: 233 LILGRKNVGLSFQVHKYLNV 252


>gi|228920154|ref|ZP_04083503.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228839610|gb|EEM84902.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 220

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 20/159 (12%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDIWSELVA 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P L  ++  L+  L + G   A+ET G+   +    ID + +SPK
Sbjct: 51  IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLEIDEVTISPK 110

Query: 137 AGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFER 170
                     Q+L     KL    +++    +  +DFE 
Sbjct: 111 PPSSTMKTDFQKLDAMIQKLAGKDISLKVVVFDDYDFEY 149


>gi|167950638|ref|ZP_02537712.1| Radical SAM domain protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 136

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 32/154 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M    I EIF +LQGE   AG       R               S    +CDT++     
Sbjct: 7   MARLRISEIFYSLQGESRTAGLSTALVLRL----------NRLPSYVVSYCDTEYAF--- 53

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVET 118
           + G    +  + D +E          R   +TGGEPL Q   + L+ +L ++G E+++ET
Sbjct: 54  SGGEWMELAAVLDQVER------SAARRICVTGGEPLAQTACIELLDSLLEQGCEVSLET 107

Query: 119 NGTIEPPQGIDWICVSPKAGC-----DLKIKGGQ 147
           +G ++         V P+        D +++ G 
Sbjct: 108 SGALDISA------VDPRVSRVVDSEDPRLRRGD 135


>gi|229068993|ref|ZP_04202286.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus F65185]
 gi|229078627|ref|ZP_04211184.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus Rock4-2]
 gi|229177849|ref|ZP_04305222.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus 172560W]
 gi|228605640|gb|EEK63088.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus 172560W]
 gi|228704697|gb|EEL57126.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus Rock4-2]
 gi|228714105|gb|EEL65987.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus F65185]
          Length = 220

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 15/140 (10%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+ +E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P L  ++  L+  L + G   A+ET G+   +    ID + +SPK
Sbjct: 51  IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQV 156
                      +L  +  ++
Sbjct: 111 PPSSTMKTDFHKLDAIIQKL 130


>gi|228900023|ref|ZP_04064259.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis IBL 4222]
 gi|228964405|ref|ZP_04125519.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228795262|gb|EEM42754.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228859637|gb|EEN04061.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis IBL 4222]
          Length = 220

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 15/140 (10%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+ +E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKNQIRQMTAEDIWDELVA 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G ++  +  ++GG P L  ++  L+  L + G   A+ET G+   +    ID + +SPK
Sbjct: 51  IGGEKFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQV 156
                     Q+L  +  ++
Sbjct: 111 PPSSTMKTDFQKLDAIIQKL 130


>gi|229189524|ref|ZP_04316540.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus ATCC 10876]
 gi|228593969|gb|EEK51772.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus ATCC 10876]
          Length = 220

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 15/140 (10%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+ +E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P L  ++  L+  L + G   A+ET G+   +    ID + +SPK
Sbjct: 51  IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQV 156
                      +L  +  ++
Sbjct: 111 PPSSTMKTDFHKLDAIIQKL 130


>gi|315230412|ref|YP_004070848.1| queuosine biosynthesis QueE-like protein [Thermococcus barophilus
           MP]
 gi|315183440|gb|ADT83625.1| queuosine biosynthesis QueE-like protein [Thermococcus barophilus
           MP]
          Length = 255

 Score =  105 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 99/259 (38%), Gaps = 69/259 (26%)

Query: 8   EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTK 61
           EIF + QGEGG       GR  +F RF+GC+L           +C +CD+  F+      
Sbjct: 9   EIFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------RCVWCDSRQFIDASKVL 57

Query: 62  GGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQA 106
             RY ++              L ++++        +      TGGEP LQ      L++ 
Sbjct: 58  QWRYEIEPFSGEFKYKPNPATLDEVVDVILSLDTGDVHSISYTGGEPTLQIKPLKALMEK 117

Query: 107 LNKRGFEIAVETNGTIE-----PPQGIDWICVSPK--------AGCDLKIKGGQELKL-- 151
            ++ GF+  +ET+G            +D+  V  K        A  DL +   + +K+  
Sbjct: 118 SSELGFKNFLETHGGFPERIAEIAHLVDYASVDIKDESARATGAWRDLVMMEVESIKILR 177

Query: 152 -----VFPQVNVSPENYIGFDFERFS----------LQPMD-----GPFLEENTNLAISY 191
                V+ ++ V+ +  +  + E ++          +QP +        L E    A + 
Sbjct: 178 KAGAKVYAKLVVTKDTKLE-NIEWYASLLEGSAPLVIQPKEPIDLTQKQLMEFYKAA-AK 235

Query: 192 CFQNPKWRLSVQTHKFIGI 210
                   LS Q HK++ +
Sbjct: 236 ILGRENVGLSFQVHKYLNV 254


>gi|229100293|ref|ZP_04231179.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus Rock3-29]
 gi|229114880|ref|ZP_04244293.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus Rock1-3]
 gi|228668572|gb|EEL24001.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus Rock1-3]
 gi|228683123|gb|EEL37115.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus Rock3-29]
          Length = 220

 Score =  105 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 15/140 (10%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCSWCDSAFTW-DGSAKDQIRQMPAEDIWNELVE 50

Query: 80  TGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P LL+    L+  L + G   A+ET G+   +    ID I +SPK
Sbjct: 51  IGGENFSHVTISGGNPVLLKNIESLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQV 156
                     Q+L  V  ++
Sbjct: 111 PPSSGMKTDYQKLDAVIQKL 130


>gi|229016691|ref|ZP_04173624.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus AH1273]
 gi|229022903|ref|ZP_04179423.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus AH1272]
 gi|228738438|gb|EEL88914.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus AH1272]
 gi|228744599|gb|EEL94668.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus AH1273]
          Length = 220

 Score =  105 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 15/140 (10%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMSAEDIWNELVE 50

Query: 80  TGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P LL+    L+  L + G   A+ET G+   +    ID + +SPK
Sbjct: 51  IGGENFSHVTISGGNPVLLKNIESLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQV 156
                     Q+L  V  ++
Sbjct: 111 PPSSAMHTDFQKLDDVIQKL 130


>gi|169828572|ref|YP_001698730.1| coenzyme PQQ synthesis-like protein [Lysinibacillus sphaericus
           C3-41]
 gi|168993060|gb|ACA40600.1| coenzyme PQQ synthesis-like protein [Lysinibacillus sphaericus
           C3-41]
          Length = 224

 Score =  105 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 66/179 (36%), Gaps = 36/179 (20%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+           ++  E   
Sbjct: 3   VGQKTMFVRTAGCDY-----------SCSWCDSSFTW-DGSGKHLIVQMTAEEIWAELKR 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
            G     Y  ++GG P L  ++  LI  L +   ++AVET G+        ID + +SPK
Sbjct: 51  LGGNGFSYVTISGGNPALYANLEALIAILKENNIKVAVETQGSRWQNWMYDIDELTISPK 110

Query: 137 AGC---------------DLKIKGGQ---ELKLVF---PQVNVSPENYIGFDFERFSLQ 174
           A                  L+++       LK+V       + + + +  F    F LQ
Sbjct: 111 APSSGMTTEYSVLVDIFGKLRLRNSHHHISLKIVVFTQEDYDFAKQIHHQFPTIPFYLQ 169


>gi|238926278|ref|ZP_04658038.1| radical SAM domain protein [Selenomonas flueggei ATCC 43531]
 gi|238885958|gb|EEQ49596.1| radical SAM domain protein [Selenomonas flueggei ATCC 43531]
          Length = 248

 Score =  105 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/250 (23%), Positives = 88/250 (35%), Gaps = 65/250 (26%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------IQ 58
           +I EIF ++QGEG + G   VF R  GCNL            C +CDTD         + 
Sbjct: 9   NIIEIFSSIQGEGKYVGCRQVFLRLEGCNL-----------NCTYCDTDSKAGTHPNCVV 57

Query: 59  GTKGGRYNVDQLADLIE-------EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR- 110
               G Y++    + I                  +   +TGGEPLL      I+AL    
Sbjct: 58  EEGAGTYHLVPYPNPISPERAAELVALAAAGVPHQALSITGGEPLLHA--SFIRALAPHV 115

Query: 111 GFEIAVETNGTI--EPPQGIDWICVSPKAGCDLKIKG---------------GQELKLVF 153
              I +ETNGT+  E  + ID +        D+K+                   ++K  +
Sbjct: 116 HLPIYLETNGTLYAELKKCIDCVA---GISMDIKLPSVTAHPVWDAHVRFLEIAKVKDTW 172

Query: 154 PQVNV---SPENYIGFDFERFS---------LQ---PMDGPFLEENTNL--AISYCFQNP 196
            ++ V   SP++ I       +         LQ   P  G     +  L        +  
Sbjct: 173 IKIVVAAESPDSEIDTAVRLVADTAPETMLILQPVTPCGGCMKPSSEQLLKWQETALRRL 232

Query: 197 -KWRLSVQTH 205
              R+  QTH
Sbjct: 233 ANVRVIPQTH 242


>gi|332158894|ref|YP_004424173.1| hypothetical protein PNA2_1254 [Pyrococcus sp. NA2]
 gi|331034357|gb|AEC52169.1| hypothetical protein PNA2_1254 [Pyrococcus sp. NA2]
          Length = 254

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 59/267 (22%), Positives = 104/267 (38%), Gaps = 71/267 (26%)

Query: 1   MKLYSIKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCD---- 51
           M    + E+F + QGEGG       GR  +F RF+GC+L           +C +CD    
Sbjct: 1   MVKLILAEVFNSWQGEGGSVPGSAFGRRQIFVRFAGCDL-----------RCFYCDSSQF 49

Query: 52  -------TDFVGIQGTKGG---RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-- 99
                  T  V I+   G    + N   + ++++        +      TGGEP LQ+  
Sbjct: 50  LSPLNVKTWRVEIEPFSGKFEYKKNPASVEEVVKVVLSLDTGDIHSISYTGGEPTLQIKG 109

Query: 100 DVPLIQALNKRGFEIAVETNGTIE-----PPQGIDWICV-----SPKA---GCDLKIKGG 146
              L+  +   GF+  +ET+G          + +D+  V     S KA     DL ++  
Sbjct: 110 LRILMDRMKSLGFDNFLETHGGHPNLIREIAELVDYASVDIKDESSKAYGNWKDLVLREV 169

Query: 147 QELKL-------VFPQVNVSPENYIGFDFERFS-----------LQP-----MDGPFLEE 183
           + +K+       V+ ++ V+ +     +  R+            +QP     +   FL +
Sbjct: 170 ESIKILKDAGAEVYAKLVVTRDT--KLENVRWYAELLRGLAPLVIQPAEPINISMKFLMK 227

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
             N  ++         LS Q HK++G+
Sbjct: 228 LYNE-VARIMGKKNVGLSFQVHKYLGV 253


>gi|217033120|ref|ZP_03438583.1| hypothetical protein HPB128_8g11 [Helicobacter pylori B128]
 gi|298736112|ref|YP_003728637.1| 6-pyruvoyltetrahydropterin 2'-reductase [Helicobacter pylori B8]
 gi|216945163|gb|EEC23856.1| hypothetical protein HPB128_8g11 [Helicobacter pylori B128]
 gi|298355301|emb|CBI66173.1| 6-pyruvoyltetrahydropterin 2'-reductase [Helicobacter pylori B8]
          Length = 251

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 86/216 (39%), Gaps = 29/216 (13%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVG- 56
           MKL  + E F +LQGEG + G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKNIGKPSLFLRLGGCNLSCKGFNCKTPFNDEILTGCDSLYAVH 59

Query: 57  --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALN---KR 110
              + T     +   L + +E   +T   +    +LTGGEP L  + P LI  L    ++
Sbjct: 60  PKFKETWDYYNDPKPLIERLE--GLTPNYKHFDFILTGGEPSLYFNNPILISVLEHFYRK 117

Query: 111 GFEIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
              + VE+NG+I     P        +S K    L+    +E K +  +   +  N    
Sbjct: 118 KIPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EESKRIHLKALQNILNNAKS 173

Query: 167 DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
              +F L        +  T   I    QN   RLS+
Sbjct: 174 VHFKFVL------ESQNATQSIIE--IQNLLKRLSL 201


>gi|228907074|ref|ZP_04070938.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis IBL 200]
 gi|228852578|gb|EEM97368.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis IBL 200]
          Length = 220

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 15/140 (10%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+ +E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKNQIRQMTAEDIWDELVT 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
            G +   +  ++GG P L  ++  L+  L + G   A+ET G+        ID + +SPK
Sbjct: 51  IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQNWLLQIDEVTISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQV 156
                     Q+L  +  ++
Sbjct: 111 PPSSTMKTDFQKLDAIIQKL 130


>gi|148264177|ref|YP_001230883.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146397677|gb|ABQ26310.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 250

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 65/258 (25%), Positives = 98/258 (37%), Gaps = 75/258 (29%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT------DFVGIQGTK 61
           E+F ++QGEG   G   +F R  GCN             C +CDT      +F  ++GT 
Sbjct: 10  ELFSSIQGEGMLVGLRQIFIRLCGCNFT-----------CNYCDTESNVSVEFCQMEGTP 58

Query: 62  GGR--------YNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQAL--NKR 110
           G R          +++L  LI   W  G     +   +TGGEPLL  ++ L + L   + 
Sbjct: 59  GRRDFIQVKNPVALERLTCLI-SGWQRGWPGIHHSISITGGEPLLHYEL-LQEWLPVLRE 116

Query: 111 GFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLKIK---GGQEL------------- 149
              I +ETNG +          ID +      G D+KI    G  +L             
Sbjct: 117 FLPIYLETNGVLHKELSQVISHIDHV------GMDIKIPSTSGCADLWKDHEAFLRIAAA 170

Query: 150 KLVFPQVNV--SPENYIGFDFERF----------SLQPMDGPFLE------ENTNLAISY 191
           K VF +  +  + E++                   LQP+  P  +      +   L  + 
Sbjct: 171 KNVFVKAVIGNNTEDWEIIKASEIIASIDNAIPLILQPLTNPDGKIDIAPVKMLELQETA 230

Query: 192 CFQNPKWRLSVQTHKFIG 209
                + R+  QTHKFIG
Sbjct: 231 SIFLKEVRIIPQTHKFIG 248


>gi|228938557|ref|ZP_04101165.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228971436|ref|ZP_04132062.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228978049|ref|ZP_04138428.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis Bt407]
 gi|228781710|gb|EEM29909.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis Bt407]
 gi|228788303|gb|EEM36256.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228821155|gb|EEM67172.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|326939066|gb|AEA14962.1| organic radical activating protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 220

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 15/140 (10%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+ +E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P L  ++  L+  L + G   A+ET G+   +    ID + +SPK
Sbjct: 51  IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQV 156
                     Q+L  +  ++
Sbjct: 111 PPSSTMKTDFQKLDAIIQKL 130


>gi|254412243|ref|ZP_05026018.1| radical SAM domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196181209|gb|EDX76198.1| radical SAM domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 269

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 62/265 (23%), Positives = 96/265 (36%), Gaps = 76/265 (28%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-------I 57
            + E+F  +QGEG + G   +F R + C+L           +C FCD+           +
Sbjct: 19  RLIELFSAIQGEGRNVGTRQLFIRLALCDL-----------RCHFCDSQNTWAVPNLASV 67

Query: 58  QGTKGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-- 107
           + T G R          VDQL   +E Q   G  E     +TGGEPLLQ   P ++    
Sbjct: 68  EQTPGHRDFETHPNPVTVDQLLAWVERQNYPGLHES--ISITGGEPLLQA--PFLREFLP 123

Query: 108 ---NKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK--GGQE-------------- 148
              ++ G  I +ET G   P Q    +      G D+K+    G+E              
Sbjct: 124 VVQHRTGLPIYLETGG-HRPEQLAQILPYLNSIGMDMKLPSVSGEECWHAHRQFLQVCGD 182

Query: 149 ------LKLVFPQVNVSPENYIGFDFER-------FSLQPMDGPFLEENTNLA------- 188
                 +KL+  Q   + E  +  +            LQP+       +  +        
Sbjct: 183 ADVEVFVKLIIAQTTNTAELELAAELVAACNPSIPVFLQPVTPLAQPHHAPMIPPTPTQV 242

Query: 189 ---ISYCFQNPK-WRLSVQTHKFIG 209
               +   ++ K  R+  QTHK IG
Sbjct: 243 LEWQALMKRHLKSVRVIPQTHKMIG 267


>gi|22298438|ref|NP_681685.1| hypothetical protein tll0895 [Thermosynechococcus elongatus BP-1]
 gi|22294618|dbj|BAC08447.1| tll0895 [Thermosynechococcus elongatus BP-1]
          Length = 301

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 90/262 (34%), Gaps = 66/262 (25%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
             + EIF  +QGEG + G   +F R +GC+L           +C +CD+           
Sbjct: 52  LPLVEIFSAIQGEGANVGCRQIFIRLAGCDL-----------RCTYCDSAHTWFVPSHAL 100

Query: 58  -QGTKGGRY-----NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQV--DVPLIQALN 108
            +   G R+     N    A ++E               LTGGEPLL        +  L 
Sbjct: 101 IEKQTGDRHFQTVPNPVSAAHILEAVQRLNTPPIHDSISLTGGEPLLHAATLARFLPLLK 160

Query: 109 KR-GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG-GQE---------LKL------ 151
                 + +ET G       +  +      G D+K+     E         L+L      
Sbjct: 161 AHSSLPLYLETGGHHPEALQL-ILPYLDSVGMDIKLPSVSGECHWSAHGVFLRLCDRAPV 219

Query: 152 -VFPQVNVS----PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP------KW-- 198
            VF +V VS    P +         S+ P    FL+  T +    C   P      KW  
Sbjct: 220 EVFCKVIVSRTTDPADLDRLSALVASVNPHIPIFLQPVTPVGTGRCTPPPTPDQVLKWQG 279

Query: 199 ---------RLSVQTHKFIGIR 211
                    R+  QTHKF+G R
Sbjct: 280 QLKTRLTHVRVVPQTHKFLGQR 301


>gi|254497309|ref|ZP_05110117.1| hypothetical protein LDG_1789 [Legionella drancourtii LLAP12]
 gi|254353537|gb|EET12264.1| hypothetical protein LDG_1789 [Legionella drancourtii LLAP12]
          Length = 291

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 79/184 (42%), Gaps = 30/184 (16%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           +   F TLQGEG + G  A F R + CNL            C FCDT F   +       
Sbjct: 23  VTSRFFTLQGEGPYRGHPAYFIRLAKCNL-----------ACSFCDTYFDSGEWRSFSSL 71

Query: 66  NVDQ---LADLIEE------QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-IA 115
            V+    +A+  ++       W  G  +    V+TGGEP LQ +V    A  +R F+   
Sbjct: 72  LVEADVVIAEFFKQRNLPIPAWGQGVAKKIVLVITGGEPSLQNNVSAFLAEAQRYFQYTQ 131

Query: 116 VETNGT---IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENYIGFDFERF 171
           +E+NGT    + P     + VSPK       K G  ++ + P V  ++  +Y+ F     
Sbjct: 132 IESNGTSVLSDLPPSTTLV-VSPKCLE----KNGAAVRYLEPNVKMLARADYLKFVMSAP 186

Query: 172 SLQP 175
            ++P
Sbjct: 187 EVEP 190


>gi|304437068|ref|ZP_07397031.1| radical SAM domain protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370019|gb|EFM23681.1| radical SAM domain protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 248

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 87/252 (34%), Gaps = 69/252 (27%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT--------DFVG 56
           +I EIF T+QGEG + G   VF R  GCNL            C +CDT        D V 
Sbjct: 9   NIIEIFSTVQGEGKYVGCRQVFLRLEGCNL-----------HCSYCDTNSAVGMHPDCVV 57

Query: 57  IQGTK-------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
            +G             +  + A+L+E          +   +TGGEPLL      I AL  
Sbjct: 58  EEGAGTYHLVPYPNPISPQRAAELVE--IAAAGVPHQALNITGGEPLLHA--AFIHALAP 113

Query: 110 R-GFEIAVETNGTI--EPPQGIDWICVSPKAGCDLKIKGGQE------------------ 148
                I +E+NGT+  E  + +D +        D+K+                       
Sbjct: 114 HVHLPIYLESNGTLHEELKKCVDCVA---GISMDIKLPSATTHPVWDAHVRFLEIAKAKD 170

Query: 149 --LKLVFP------QVNVSPENYIGFDFER-FSLQP------MDGPFLEENTNLAISYCF 193
             +K+V        +V+ +         E    LQP         P  E+      +   
Sbjct: 171 TWVKIVVAGESPDGEVDTAIRLVADIAPETMLILQPVTPYGGCTKPSPEQLLAWQENALR 230

Query: 194 QNPKWRLSVQTH 205
           +    R+  QTH
Sbjct: 231 RLAHVRVIPQTH 242


>gi|228984517|ref|ZP_04144694.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228775220|gb|EEM23609.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 220

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 20/159 (12%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P L  ++  L+  L + G   A+ET G+   +    ID + +SPK
Sbjct: 51  IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170
                     Q+L  +  +++    +     +  +DFE 
Sbjct: 111 PPSSTMKTDFQKLDAIIQKLSGKDISLKVVVFDDYDFEY 149


>gi|229172081|ref|ZP_04299646.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus MM3]
 gi|228611424|gb|EEK68681.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus MM3]
          Length = 220

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 20/159 (12%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P L  ++  L+  L + G   A+ET G+   +    ID I +SPK
Sbjct: 51  IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170
                     Q+L  V  ++     +     +  +DFE 
Sbjct: 111 PPSSAMNTDFQKLDAVIQKLAGKDISLKVVVFDDYDFEY 149


>gi|229155009|ref|ZP_04283123.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus ATCC 4342]
 gi|228628567|gb|EEK85280.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus ATCC 4342]
          Length = 220

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 20/159 (12%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P L  ++  L+  L + G   A+ET G+   +    ID I +SPK
Sbjct: 51  IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170
                     Q+L  +  +++    +     +  +DFE 
Sbjct: 111 PPSSTMKTDFQKLDAIIQKLSGKDISLKVVVFDDYDFEY 149


>gi|229043184|ref|ZP_04190907.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus AH676]
 gi|228726146|gb|EEL77380.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus AH676]
          Length = 220

 Score =  103 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 20/159 (12%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+ +E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P L  ++  L+  L + G   A+ET G+   +    ID I +SPK
Sbjct: 51  IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170
                     Q L  +  ++     +     +  +DFE 
Sbjct: 111 PPSSTMKTDFQRLDAIIQKLAGKDISLKVVVFDDYDFEY 149


>gi|229029113|ref|ZP_04185211.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus AH1271]
 gi|228732211|gb|EEL83095.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus AH1271]
          Length = 220

 Score =  103 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 15/140 (10%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P L  ++  L+  L + G   A+ET G+   +    ID I +SPK
Sbjct: 51  IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQV 156
                     Q+L  V  ++
Sbjct: 111 PPSSAMNTDFQKLDAVIQKL 130


>gi|228914013|ref|ZP_04077635.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228926472|ref|ZP_04089544.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|229090395|ref|ZP_04221638.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus Rock3-42]
 gi|229183635|ref|ZP_04310858.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus BGSC 6E1]
 gi|228599878|gb|EEK57475.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus BGSC 6E1]
 gi|228692978|gb|EEL46696.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus Rock3-42]
 gi|228833296|gb|EEM78861.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228845618|gb|EEM90647.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 220

 Score =  103 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 20/159 (12%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P+L  ++  L+  L + G   A+ET G+   +    ID I +SPK
Sbjct: 51  IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170
                     Q+L  V  ++     +     +  +DFE 
Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEY 149


>gi|229120981|ref|ZP_04250223.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus 95/8201]
 gi|228662641|gb|EEL18239.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus 95/8201]
          Length = 220

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 15/140 (10%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P+L  ++  L+  L + G   A+ET G+   +    ID I +SPK
Sbjct: 51  IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQV 156
                     Q+L  V  ++
Sbjct: 111 PPSSTMNTDFQKLDDVIQKL 130


>gi|228957714|ref|ZP_04119458.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|229126759|ref|ZP_04255771.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus BDRD-Cer4]
 gi|229144046|ref|ZP_04272462.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus BDRD-ST24]
 gi|229149643|ref|ZP_04277874.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus m1550]
 gi|296502023|ref|YP_003663723.1| organic radical activating protein [Bacillus thuringiensis BMB171]
 gi|228633853|gb|EEK90451.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus m1550]
 gi|228639443|gb|EEK95857.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus BDRD-ST24]
 gi|228656699|gb|EEL12525.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus BDRD-Cer4]
 gi|228801957|gb|EEM48830.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|296323075|gb|ADH06003.1| organic radical activating protein [Bacillus thuringiensis BMB171]
          Length = 220

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 15/140 (10%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+ +E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P L  ++  L+  L + G   A+ET G+   +    ID I +SPK
Sbjct: 51  IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQV 156
                     Q L  +  ++
Sbjct: 111 PPSSTMKTDFQRLDAIIQKL 130


>gi|303244776|ref|ZP_07331105.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
 gi|302484817|gb|EFL47752.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
          Length = 246

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 86/251 (34%), Gaps = 55/251 (21%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS--GREQDRLSAQCRFCDTDFVGIQGTKGG 63
           I EIF ++ GEG   GR  +F RF GC L      E  + +  CR    + +   G    
Sbjct: 2   ISEIFSSIMGEGKFIGRRYIFVRFKGCPLNCIYCDEHVKDNLICRV---EEIPGSGEFKE 58

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
             +++    LI+        +      TGGEPLL  D      + L+  G++  +E+NG 
Sbjct: 59  YDDINDNDKLIDVINKLKTPDLFAISFTGGEPLLYADKIKEYSKILHNLGYKTHLESNGM 118

Query: 122 IEPPQGIDWICVSPKAGCDLKIKG--------------GQELKL----------VFPQVN 157
                  D I     A  D+K+                  ELK           V+ +V 
Sbjct: 119 YP-----DRITFFDYASIDIKLLEHFVNMDIETYTKLYKNELKSIKKLYDLGSDVYAKVV 173

Query: 158 VS-----------PENYIGFDFERFSLQPMDGPFLEENTNL------AISYCFQNPKWRL 200
           +             ++          +QP+      + T         +  C  + K  +
Sbjct: 174 IMGNTNPKVVENIAKDLSDIGDIMLCIQPVSSCLNIKTTPTNKKLLDIMELCGAHLKDNV 233

Query: 201 SV--QTHKFIG 209
               Q HK++G
Sbjct: 234 ICTSQMHKYLG 244


>gi|228945040|ref|ZP_04107401.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228814709|gb|EEM60969.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 220

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 20/159 (12%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P+L  ++  L+  L + G   A+ET G+   +    ID I +SPK
Sbjct: 51  IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170
                     Q+L  V  ++     +     +  +DFE 
Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEY 149


>gi|220910548|ref|YP_002485859.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219867159|gb|ACL47498.1| Radical SAM domain protein [Cyanothece sp. PCC 7425]
          Length = 268

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/263 (22%), Positives = 92/263 (34%), Gaps = 74/263 (28%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG----- 59
            + E+F  +QGEG + G   +F RF+ C+L           +C FCD+            
Sbjct: 20  PLVEVFSAIQGEGLNVGTRQIFIRFAQCDL-----------RCHFCDSAHTWYSRPTCQI 68

Query: 60  ----------TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQAL 107
                     T      +DQL   +++    G        LTGGEPLLQ      L+  L
Sbjct: 69  EQSPGQRDFQTYPNPVTIDQLLAWVKDL--HGPHLHDSISLTGGEPLLQSQFLQRLLPQL 126

Query: 108 NKR-GFEIAVETNGTIEPPQG--IDWICVSPKAGCDLKIKGGQ----------------- 147
            +  G  + +ET G         + W+ +    G D+K+                     
Sbjct: 127 RETIGLPLYLETGGHRPQELQQVLAWLDL---VGMDIKLPSASGENYWTAHAEFLRCCHT 183

Query: 148 ---EL--KLVFPQ------VNVSPENYIGFDFER-FSLQPM----DGPFLEENTNLAI-- 189
              E+  KL+  Q      +  + E     D      LQP+    + P +   T   +  
Sbjct: 184 AGVEVFCKLILSQQTEAEELEQTTELIASIDPAIPLILQPVTPLGNKPQILAPTPAQVLH 243

Query: 190 --SYCFQNP-KWRLSVQTHKFIG 209
             + C     + R+  QTHK IG
Sbjct: 244 WQALCKTRLKQVRVIPQTHKMIG 266


>gi|229195638|ref|ZP_04322404.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus m1293]
 gi|228587887|gb|EEK45939.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus m1293]
          Length = 220

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 79/220 (35%), Gaps = 46/220 (20%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P+L  ++  L+  L + G   A+ET G+   +    ID I +SPK
Sbjct: 51  IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLEIDEITISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER------------FSLQPM--D 177
                     Q+L  V  ++     +     +  +DFE             F LQ    D
Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEYAVKMHERYPDVPFFLQVGNDD 170

Query: 178 GPFLEENT---NLAISY---------CFQNPKWRLSVQTH 205
              +++      L   Y         C +    ++  Q H
Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIEKAVNCKEMNNAKVLPQLH 210


>gi|228932724|ref|ZP_04095596.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228826929|gb|EEM72691.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 220

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 20/159 (12%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P+L  ++  L+  L + G   A+ET G+   +    ID I +SPK
Sbjct: 51  IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER 170
                     Q+L  V  ++     +     +  +DFE 
Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEY 149


>gi|326774406|ref|ZP_08233671.1| Radical SAM domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|326654739|gb|EGE39585.1| Radical SAM domain protein [Streptomyces cf. griseus XylebKG-1]
          Length = 244

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 61/159 (38%), Gaps = 22/159 (13%)

Query: 4   YSIKEIFLTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             ++EIF  + QGEG   GR A F RF  CNL            C  CD+          
Sbjct: 15  LPVQEIFGPVPQGEGPFMGRRACFVRFGRCNL-----------HCPPCDSKATWDSSRYD 63

Query: 63  GRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
            R     +  + I +            VLTGGEPL+ Q      Q L     EI VETN 
Sbjct: 64  LRQTCPPRTVEDIAQTAAAHGAGSGITVLTGGEPLMWQRSTAWAQLLQDLPGEIHVETNA 123

Query: 121 TIEPPQ----GIDWICVSPKAGCDLKIKGGQ-ELKLVFP 154
           TI         +    VSPK G   ++ G   E K + P
Sbjct: 124 TIAADPVTTGRVAHFSVSPKIG---RMGGADPEKKRLVP 159


>gi|229138128|ref|ZP_04266726.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus BDRD-ST26]
 gi|228645473|gb|EEL01707.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus BDRD-ST26]
          Length = 220

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 79/220 (35%), Gaps = 46/220 (20%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P+L  ++  L+  L + G   A+ET G+   +    ID I +SPK
Sbjct: 51  IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLEIDEITISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER------------FSLQPM--D 177
                     Q+L  V  ++     +     +  +DFE             F LQ    D
Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEYAVKMHERYPEVPFFLQVGNDD 170

Query: 178 GPFLEENT---NLAISY---------CFQNPKWRLSVQTH 205
              +++      L   Y         C +    ++  Q H
Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIEKAVNCKEMNNAKVLPQLH 210


>gi|294496219|ref|YP_003542712.1| radical SAM protein [Methanohalophilus mahii DSM 5219]
 gi|292667218|gb|ADE37067.1| Radical SAM domain protein [Methanohalophilus mahii DSM 5219]
          Length = 239

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 58/153 (37%), Gaps = 25/153 (16%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-----DFV 55
           M+   + EIF  +QGEG + G    F RF GCNL            C +CDT     D  
Sbjct: 1   METKPVSEIFCAVQGEGPYVGVRQAFVRFVGCNL-----------DCSYCDTPLDEPDHC 49

Query: 56  GIQGTKG----GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111
             +   G     + +    A  IEE             LTGGEPLL      I+ L    
Sbjct: 50  LFEKVPGSGEFEKLSPMLCASDIEE-RTRAFVNLHSVSLTGGEPLLHA--EFIRGL-DLP 105

Query: 112 FEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144
             + +ETN T+     I    V      D+K+ 
Sbjct: 106 APVYLETNMTLPEKAAIVKDSVD-YVAGDVKLP 137


>gi|254779534|ref|YP_003057640.1| hypothetical protein HELPY_0917 [Helicobacter pylori B38]
 gi|254001446|emb|CAX29441.1| Conserved hypothetical protein [Helicobacter pylori B38]
          Length = 251

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 80/214 (37%), Gaps = 25/214 (11%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILNDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112
              K      +    LIE           +  +LTGGEP L  + P LI  L    ++  
Sbjct: 60  PKFKETWDYYNDPKPLIERLEDLAPNYKHFDFILTGGEPSLYFNNPILISVLEHFYRKKI 119

Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
            + VE+NG+I     P        +S K    L+    +E K +  +   +  N      
Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----KESKRIHLKALQNILNNAKSVH 175

Query: 169 ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
            +F L        +      I    QN   RLS+
Sbjct: 176 FKFVL------ESQNAAQSIIE--IQNLLKRLSL 201


>gi|270157549|ref|ZP_06186206.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|289164069|ref|YP_003454207.1| hypothetical protein LLO_0725 [Legionella longbeachae NSW150]
 gi|269989574|gb|EEZ95828.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|288857242|emb|CBJ11067.1| hypothetical protein LLO_0725 [Legionella longbeachae NSW150]
          Length = 291

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 75/210 (35%), Gaps = 52/210 (24%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           +   F TLQGEG   G  A F R + CNL            C FCDT F      +   +
Sbjct: 23  VTSRFFTLQGEGPFRGHPAYFIRLAKCNL-----------ACSFCDTYF---DSGEWRNF 68

Query: 66  N--VDQLADLIEEQ----------WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
              +++   +IE+           W  G  +    V+TGGEP LQ ++     + +  F+
Sbjct: 69  TSLLEEADQVIEDFFKNRNLPPPSWAQGLTKKMVLVITGGEPSLQQNLSAFLDIAQPYFQ 128

Query: 114 -IAVETNG--TIEPPQGIDWICVSPK------------AGCDLKIKGGQELKLV------ 152
              +E+NG   +        + VSPK                  ++    LK V      
Sbjct: 129 STQIESNGICVLSDLPKSTTLVVSPKCLEKEGKVIRYLKPNPKMLERADCLKFVISAPED 188

Query: 153 -----FPQVNVSPENYIGFDFERFSLQPMD 177
                +  + +    +     ++  + PM+
Sbjct: 189 NQYAPYSDIPLWAHEWAKKRNKKIFISPMN 218


>gi|330506424|ref|YP_004382852.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6]
 gi|328927232|gb|AEB67034.1| radical SAM domain protein [Methanosaeta concilii GP-6]
          Length = 185

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/149 (33%), Positives = 65/149 (43%), Gaps = 34/149 (22%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            GR A+F R SGCNL            C  CDTD            +V +L   IE    
Sbjct: 1   MGRPALFIRLSGCNL-----------NCEGCDTDL-----KPSLDLSVLELLKRIE---- 40

Query: 80  TGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGT----IEPPQGIDWICV 133
               +G+  ++TGGEP LQ    V LI  L  RG EI +E+NGT    ++  + I    V
Sbjct: 41  ---GQGKRVIITGGEPTLQMNELVDLICRLYSRGMEIHIESNGTNTIPLDILEKICCAVV 97

Query: 134 SPKAGCDLKI-----KGGQELKLVFPQVN 157
           SPK G D  +     K    LK V  + +
Sbjct: 98  SPKRGSDFNLGFWANKSNVHLKFVLGKPD 126


>gi|229108898|ref|ZP_04238502.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus Rock1-15]
 gi|228674554|gb|EEL29794.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus Rock1-15]
          Length = 220

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 15/140 (10%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+ +E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P L  ++  L+  L + G   A+ET G+   +    ID I +SPK
Sbjct: 51  IGGENFSHVTISGGNPALLKNIEFLLFILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQV 156
                     Q L  +  ++
Sbjct: 111 PPSSTMKTDFQRLDAIIQKL 130


>gi|39996820|ref|NP_952771.1| radical SAM domain-containing protein [Geobacter sulfurreducens
           PCA]
 gi|39983708|gb|AAR35098.1| radical SAM domain protein [Geobacter sulfurreducens PCA]
 gi|298505829|gb|ADI84552.1| 7-carboxy-7-deazaguanine synthase [Geobacter sulfurreducens KN400]
          Length = 250

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 63/257 (24%), Positives = 93/257 (36%), Gaps = 73/257 (28%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF------VGIQGTK 61
           E+F ++QGEG   G   VF RF GCNL            C +CDT          I+ T 
Sbjct: 10  EVFSSVQGEGMLIGLRQVFIRFRGCNLT-----------CDYCDTPAGTPAEPCRIEQTP 58

Query: 62  GGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL--NKRG 111
           G R         ++D++A L+E              +TGGEPLL+ D+ L+Q L   +  
Sbjct: 59  GRRDFVPADNPVSLDRVAALVEGWQRGWPGVHDSISITGGEPLLRHDI-LMQWLPVLREH 117

Query: 112 FEIAVETNGTIE-----PPQGIDWICVSPKAGCDLKIKG-------GQELKLVFPQVNVS 159
             + +ETNG +          +D I      G D+KI           + +      N  
Sbjct: 118 LPVYLETNGVMHAALGLVINHVDII------GMDIKIPSTSGCTDLWDDHRQFLEIANTR 171

Query: 160 P--------ENYIGFDFER-------------FSLQPMD------GPFLEENTNLAISYC 192
                    E    ++  R               LQP+       G    +   L    C
Sbjct: 172 RAFIKIVVGEETEDWEITRASEIIAGVNRDIPLILQPVTRAGDTLGIKPVKALELQELAC 231

Query: 193 FQNPKWRLSVQTHKFIG 209
               + R+  QTH+F+G
Sbjct: 232 RYLAEVRIIPQTHRFMG 248


>gi|147921309|ref|YP_684877.1| hypothetical protein RCIX33 [uncultured methanogenic archaeon RC-I]
 gi|110620273|emb|CAJ35551.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 245

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 91/257 (35%), Gaps = 70/257 (27%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56
           MK   ++EIF+++QGEG + G    F RF  CNL           +C +CDT        
Sbjct: 1   MKA-PVREIFVSVQGEGPYVGYRQAFVRFPKCNL-----------ECLYCDTAKDWDSNK 48

Query: 57  ---IQGTKG-GRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQALNKR 110
              ++ T G G +  ++            E++ +     LTGGEPLL      I+ L   
Sbjct: 49  KCMVEKTPGSGDFAEEENPITPGRLLTIAERDPKIHSISLTGGEPLLY--GSFIKELKGA 106

Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP---------------- 154
            + + +ETN T+ P    D   V      D K+K   + K  +                 
Sbjct: 107 KYPLYLETNMTL-PEGAKDVKDVVKIVSGDFKLKAHCDFKNQYEKYFNATARSFSILRRT 165

Query: 155 -------QVNVSPE----------NYIGFDFERFSLQP---------MDGPFLEENTNLA 188
                  ++ V+P+          + I        LQP         +   F+ +    A
Sbjct: 166 SFRDCFCKIIVTPDLEKEDLMHALDQIKGTISALVLQPVTPVGPVGQVSPKFVLDLQTAA 225

Query: 189 ISYCFQNPKWRLSVQTH 205
           +         R+  QTH
Sbjct: 226 MDVVE---DVRVIPQTH 239


>gi|15645550|ref|NP_207726.1| hypothetical protein HP0934 [Helicobacter pylori 26695]
 gi|2314068|gb|AAD07976.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 251

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 73/185 (39%), Gaps = 17/185 (9%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112
              K      ++   LIE           +  +LTGGEP L  + P LI  L    ++  
Sbjct: 60  PKFKTSWDYYNEPKPLIERLEDLAPNYKDFDFILTGGEPSLYFNNPILISVLEHFYRQKI 119

Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
            + VE+NG+I     P        +S K    L+    +E K +  +   +  N      
Sbjct: 120 PLCVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EESKRIHLKALQNILNNAKSAH 175

Query: 169 ERFSL 173
            +F L
Sbjct: 176 FKFVL 180


>gi|14590526|ref|NP_142594.1| hypothetical protein PH0635 [Pyrococcus horikoshii OT3]
 gi|3257042|dbj|BAA29725.1| 254aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 254

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 101/267 (37%), Gaps = 71/267 (26%)

Query: 1   MKLYSIKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCD-TDF 54
           M    + E+F + QGEGG       GR  +F RF+GC+L           +C +CD + F
Sbjct: 1   MVKLILAEVFNSWQGEGGSVPGSAFGRRQIFVRFAGCDL-----------RCIWCDSSQF 49

Query: 55  VGIQGTKGGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQV-- 99
           +     K  R  V+              + ++++        +      TGGEP LQ+  
Sbjct: 50  IDASKVKKWRIEVEPFSGRFEYRENPASIDEVVDAILKLDTGDLHSISYTGGEPTLQIEG 109

Query: 100 DVPLIQALNKRGFEIAVETNGTIE-----PPQGIDWICV-----SPKAGCD---LKIKGG 146
              L++ +   GF+  +ET+G             D+  V     S +A  D   L +K  
Sbjct: 110 LYILMERMKGLGFDNFLETHGGHPELIKRVSYLTDYASVDIKDESARASRDWRGLVLKEV 169

Query: 147 QELKL-------VFPQVNVSPENYIGFDFERFS-----------LQP-----MDGPFLEE 183
           + +K+       V+ ++ V+ E     +  ++            +QP     +   +L +
Sbjct: 170 ESIKILKEAGAKVYAKLVVTRET--KLENVKWYANLLKGVAPLAIQPKEPMDISMEYLMK 227

Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
               A +         LS Q HK++ +
Sbjct: 228 LYREA-ARIMGKKNVGLSFQVHKYLKV 253


>gi|317011141|gb|ADU84888.1| hypothetical protein HPSA_04520 [Helicobacter pylori SouthAfrica7]
          Length = 251

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 13/157 (8%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL     G E          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFGCETLLNDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITG-EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE--- 113
              K      ++ + LIE         +    +LTGGEP L  + P++ ++ +  +    
Sbjct: 60  PKFKTSWDYYNEPSSLIERLVNLAPSYKDFDFILTGGEPSLHFNNPILTSVLEHFYHKKI 119

Query: 114 -IAVETNGTI----EPPQGIDWICVSPKAGCDLKIKG 145
            + VE+NG+I     P        +S K    L+ + 
Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEQES 156


>gi|229102041|ref|ZP_04232754.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus Rock3-28]
 gi|228681428|gb|EEL35592.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus Rock3-28]
          Length = 213

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 15/135 (11%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +F R +GC+             C +CD+ F    G+   +       D+  E    G + 
Sbjct: 1   MFIRTAGCDY-----------SCSWCDSAFTW-DGSAKDQIRQMPAEDIWNELVEIGGEN 48

Query: 85  GRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPKAGCDL 141
             +  ++GG P LL+    L+  L + G   A+ET G+   +    ID I +SPK     
Sbjct: 49  FSHVTISGGNPVLLKNIESLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPKPPSSG 108

Query: 142 KIKGGQELKLVFPQV 156
                Q+L  V  ++
Sbjct: 109 MKTDYQKLDAVIQKL 123


>gi|73667685|ref|YP_303700.1| hypothetical protein Mbar_A0135 [Methanosarcina barkeri str.
           Fusaro]
 gi|72394847|gb|AAZ69120.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 258

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 22/127 (17%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            I+E+F ++QGEG + G    F RFSGCNL            C +CDTDF         +
Sbjct: 10  PIREVFCSVQGEGPYVGARQAFVRFSGCNL-----------NCNYCDTDFSNPGTCNYEQ 58

Query: 65  YNVDQLADLIE--------EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
                + + I+        E  I    +     LTGGEPL+  D   I+ LN     + +
Sbjct: 59  VEGSGIFEKIKNPVSISQLESMIRPFNKLHSVSLTGGEPLMHAD--FIEKLNLTS-PLYL 115

Query: 117 ETNGTIE 123
           E+N T+ 
Sbjct: 116 ESNMTLP 122


>gi|108563339|ref|YP_627655.1| hypothetical protein HPAG1_0914 [Helicobacter pylori HPAG1]
 gi|107837112|gb|ABF84981.1| hypothetical protein HPAG1_0914 [Helicobacter pylori HPAG1]
          Length = 251

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 82/214 (38%), Gaps = 25/214 (11%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57
           MKL  + E F +LQGEG + G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKNIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112
              K      ++   LIE           +  +LTGGEP L  + P LI  L    ++  
Sbjct: 60  PKFKTSWDYYNEPKPLIERLVNLAPNYKHFDFILTGGEPSLYFNNPILISVLEHFYRQKI 119

Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
            + VE+NG+I     P        +S K    L+    +E K +  +   +  N      
Sbjct: 120 PLCVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EESKRINLKALQNILNNAKSAH 175

Query: 169 ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
            +F L        +      I    QN   +LS+
Sbjct: 176 FKFVL------ESQNAAQSIIE--IQNLLKQLSL 201


>gi|18977649|ref|NP_579006.1| hypothetical protein PF1277 [Pyrococcus furiosus DSM 3638]
 gi|18893373|gb|AAL81401.1| hypothetical protein PF1277 [Pyrococcus furiosus DSM 3638]
          Length = 254

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 95/268 (35%), Gaps = 75/268 (27%)

Query: 3   LYSIK--EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DF 54
           +  +   EIF + QGEGG       GR  +F RF+GC+L           +C +CD+  +
Sbjct: 1   MVKVILGEIFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------RCTYCDSRKY 49

Query: 55  VGIQGTKGGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQV-- 99
           +  +  K  R  V+              + ++I+        +      TGGEP LQ+  
Sbjct: 50  IDPRSVKKYRVEVEPFSGKFKYFNNPVDVEEVIKWITKLDTGDIHSISYTGGEPTLQILG 109

Query: 100 DVPLIQALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIKGGQE----LKLVFP 154
              L++   + G++  +ET+G      + I ++     A  D+K +         KLV  
Sbjct: 110 LASLMEKAKELGYDNFLETHGGHPHLIKKIAYLT--DYASVDIKDESANATKDWRKLVVN 167

Query: 155 QV-------NVSPENYIGFDFER-------------------FSLQPMDGPFLEENTNLA 188
           ++           + Y+     R                     +QP +   +       
Sbjct: 168 EIASTKILKEAGAKVYVKLVVTRETRIENVRWYAEMLKGIAPMVIQPKEPMDMP--IKKV 225

Query: 189 ISY------CFQNPKWRLSVQTHKFIGI 210
           + +              LS Q HK++G+
Sbjct: 226 MDFYNVAAKIMGKKNVSLSFQVHKYLGV 253


>gi|317177720|dbj|BAJ55509.1| hypothetical protein HPF16_0912 [Helicobacter pylori F16]
          Length = 251

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 83/214 (38%), Gaps = 25/214 (11%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112
              K      ++   LIE           +  +LTGGEP L  + P LI  L     +  
Sbjct: 60  PKFKETWDYYNEPKSLIERLEDLAPNYKHFDFILTGGEPSLYFNNPILISVLEHFYHKKI 119

Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
            + VE+NG+I     P        +S K    L+    +E K +  +   +  N      
Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EESKRINLKALQNILNNAKSAH 175

Query: 169 ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
            +F L+        +N   +I+      K +LS+
Sbjct: 176 FKFVLE-------SKNAAQSIAEIKNLLK-QLSL 201


>gi|317012742|gb|ADU83350.1| hypothetical protein HPLT_04740 [Helicobacter pylori Lithuania75]
          Length = 251

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 80/214 (37%), Gaps = 25/214 (11%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILNDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112
              K      +    LIE           +  +LTGGEP L  + P LI  L    ++  
Sbjct: 60  PKFKETWDYYNDPKPLIERLENLAPNYKHFDFILTGGEPSLYFNNPILISVLEHFYRKKI 119

Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
            + VE+NG+I     P        +S K    L+    +E K +  +   +  +      
Sbjct: 120 PLCVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EESKRIHLKALQNILDNAKSVH 175

Query: 169 ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
            +F L        +      I    QN   +LS+
Sbjct: 176 FKFVL------ESQNAAQSIIE--IQNLLKQLSL 201


>gi|229010738|ref|ZP_04167935.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus mycoides DSM 2048]
 gi|228750412|gb|EEM00241.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus mycoides DSM 2048]
          Length = 220

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 15/140 (10%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIKQMTPEDIWNELVE 50

Query: 80  TGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P LL+    L+  L + G   AVET G+   +    ID + +SPK
Sbjct: 51  IGGENFSHVTISGGNPVLLKNMQFLLSILKENGMRTAVETQGSKWQDWLLQIDEVTISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQV 156
                       L  V  ++
Sbjct: 111 PPSSTMKTDFHMLDSVIHKL 130


>gi|298675035|ref|YP_003726785.1| radical SAM domain-containing protein [Methanohalobium evestigatum
           Z-7303]
 gi|298288023|gb|ADI73989.1| Radical SAM domain protein [Methanohalobium evestigatum Z-7303]
          Length = 239

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 87/248 (35%), Gaps = 57/248 (22%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
            I EIF ++QGEG + G   VF RF GCNL           QC++CDT    +   +   
Sbjct: 4   PISEIFCSVQGEGPYVGVRQVFVRFIGCNL-----------QCQYCDTQREYVDFCRFEE 52

Query: 65  YNVDQLADLI--------EEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
                  +LI          + I          LTGGEPL+  D   I+ L +    + +
Sbjct: 53  NPGSDEFELIPNPLDVNTVAESIESFSSVHSVSLTGGEPLIHAD--FIKNL-QISAPLYL 109

Query: 117 ETNGTIE-----PPQGIDWICVSPKAGCD----------------LKIKGGQELKLVFPQ 155
           E+N T+          + ++    K   +                 KI    E +  F +
Sbjct: 110 ESNMTLPEMAKKVKDKVSFVSGDVKIINEFECDDFETHIEKTIDSFKILKTTESRDCFCK 169

Query: 156 VNVSPENYIGFDFERF----------SLQPMDGPFLEENTN--LAISYCF--QNPKWRLS 201
           + V     I +  +             LQP+   +   +    L I      +    ++ 
Sbjct: 170 IVVLENTKIEYVLDIMDKISDYISGAILQPVTQGYNRPSVQHLLQIQKQLLDKGINTKVI 229

Query: 202 VQTHKFIG 209
            QTHK +G
Sbjct: 230 PQTHKMLG 237


>gi|317178717|dbj|BAJ56505.1| hypothetical protein HPF30_0408 [Helicobacter pylori F30]
          Length = 251

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/210 (23%), Positives = 80/210 (38%), Gaps = 24/210 (11%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVG- 56
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDETLTGCDSLYAVH 59

Query: 57  --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALN---KR 110
              + T    +    L + +E+       +    +LTGGEP L  + P LI  L     +
Sbjct: 60  PKFKETWDYYHEPKSLIERLEDLAPN--YKNFDFILTGGEPSLYFNNPILISVLEHFYHK 117

Query: 111 GFEIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
              + VE+NG+I     P        +S K    L+    +E K +  +   +  N    
Sbjct: 118 KIPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EESKRINLKALQNILNNAKS 173

Query: 167 DFERFSLQPMDGPFLEENTNLAISYCFQNP 196
              +F L   +     ++     +   Q P
Sbjct: 174 AHFKFVL---ESKNAAQSIAEIQNLLKQLP 200


>gi|57866337|ref|YP_187967.1| exsD protein [Staphylococcus epidermidis RP62A]
 gi|57636995|gb|AAW53783.1| exsD protein [Staphylococcus epidermidis RP62A]
          Length = 212

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 69/191 (36%), Gaps = 33/191 (17%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +F R +GC+            +C +CD+ F    G+      +    ++ +     G   
Sbjct: 1   MFVRTAGCDY-----------RCSWCDSAFTW-DGSAKEDIKLMTAEEIYDALLEIGGHR 48

Query: 85  GRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPKAGCDL 141
             +  ++GG P L++    L+     +    A+ET G+        ID + +SPK     
Sbjct: 49  FNHVTISGGNPALIKGIQELVDLFEDKHIYTALETQGSRFQSWMTQIDDLTISPKPPSSG 108

Query: 142 KIKGGQELKLVFPQ-------VNVSPENYIGFDFER----------FSLQPMDGPFLEEN 184
                + L  V  Q       + V   +   +DF +          F LQ +  P+L++N
Sbjct: 109 MKTNLEILDSVINQCTFHSLNLKVVIFDDADYDFAKLIHHRYPNIPFYLQ-VGNPYLDDN 167

Query: 185 TNLAISYCFQN 195
            +       + 
Sbjct: 168 VDQHTDKLLER 178


>gi|308062249|gb|ADO04137.1| hypothetical protein HPCU_04900 [Helicobacter pylori Cuz20]
          Length = 251

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 72/185 (38%), Gaps = 17/185 (9%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112
              K      ++   LIE           +  +LTGGEP L  + P LI  L     +  
Sbjct: 60  PKFKETWDYYNEPKSLIERLEDLAPNYKHFDFILTGGEPSLYFNNPILISVLEHFYHKKI 119

Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
            + VE+NG+I     P        +S K    L+    +E K +  +   +  N      
Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EESKRINLKALQNILNNAKSAH 175

Query: 169 ERFSL 173
            +F L
Sbjct: 176 FKFVL 180


>gi|210135123|ref|YP_002301562.1| radical SAM domain-containing protein [Helicobacter pylori P12]
 gi|210133091|gb|ACJ08082.1| radical SAM domain-containing protein [Helicobacter pylori P12]
          Length = 251

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 76/199 (38%), Gaps = 19/199 (9%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILNDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112
              K      +    LIE           +  +LTGGEP L  + P LI  L    ++  
Sbjct: 60  PKFKETWDYYNDPKPLIERLEDLAPNYKHFDFILTGGEPSLYFNNPILISVLEHFYRQKI 119

Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
            + VE+NG+I     P        +S K    L+    +E K +  +   +  N      
Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----KESKRINLKALQNILNNAKSAH 175

Query: 169 ERFSLQPMDGPFLEENTNL 187
            +F L+       +  T +
Sbjct: 176 FKFVLE--SQNAAQSITEI 192


>gi|229057068|ref|ZP_04196460.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus AH603]
 gi|229132239|ref|ZP_04261095.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus BDRD-ST196]
 gi|229166276|ref|ZP_04294035.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus AH621]
 gi|228617221|gb|EEK74287.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus AH621]
 gi|228651177|gb|EEL07156.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus BDRD-ST196]
 gi|228720209|gb|EEL71788.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus cereus AH603]
          Length = 220

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 15/140 (10%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       D+  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSAFTW-DGSAKDQIKQMTPEDIWNELVE 50

Query: 80  TGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P LL+    L+  L + G   AVET G+   +    ID + +SPK
Sbjct: 51  IGGENFSHVTISGGNPVLLKNMQFLLSILKENGMRTAVETQGSKWQDWLLQIDEVTISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQV 156
                     Q L  V  ++
Sbjct: 111 PPSSTMKTDFQMLDSVIHKL 130


>gi|317182232|dbj|BAJ60016.1| hypothetical protein HPF57_0942 [Helicobacter pylori F57]
          Length = 251

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 61/153 (39%), Gaps = 13/153 (8%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112
              K      ++   LIE           +  +LTGGEP L  + P LI  L     +  
Sbjct: 60  PKFKETWDYYNEPKSLIERLEDLAPNYKHFDFILTGGEPSLYFNNPILISVLEHFYHKKI 119

Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDL 141
            + VE+NG+I     P        +S K    L
Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSL 152


>gi|261838307|gb|ACX98073.1| hypothetical protein KHP_0871 [Helicobacter pylori 51]
          Length = 251

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 72/185 (38%), Gaps = 17/185 (9%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112
              K      ++   LIE           +  +LTGGEP L  + P LI  L     +  
Sbjct: 60  PKFKETWDYYNEPKSLIERLEDLAPNYKNFDFILTGGEPSLYFNNPILISVLEHFYHKKI 119

Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
            + VE+NG+I     P        +S K    L+    +E K +  +   +  N      
Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EESKRINLKALQNILNNAKSAH 175

Query: 169 ERFSL 173
            +F L
Sbjct: 176 FKFVL 180


>gi|261839719|gb|ACX99484.1| hypothetical protein HPKB_0901 [Helicobacter pylori 52]
          Length = 251

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 61/153 (39%), Gaps = 13/153 (8%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112
              K      ++   LIE           +  +LTGGEP L  + P LI  L     +  
Sbjct: 60  PKFKETWDYYNEPKSLIERLEDLAPNYKHFDFILTGGEPSLYFNNPILISVLEHFYHKKI 119

Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDL 141
            + VE+NG+I     P        +S K    L
Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSL 152


>gi|207091722|ref|ZP_03239509.1| hypothetical protein HpylHP_00921 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 251

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 71/185 (38%), Gaps = 17/185 (9%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112
              K      +    LIE           +  +LTGGEP L  + P LI  L     +  
Sbjct: 60  PKFKTSWDYYNDPKPLIERLEDLAPNYKHFDFILTGGEPSLYFNNPILISVLEHFYHKKI 119

Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
            + VE+NG+I     P        +S K    L+    +E K +  +   +  N      
Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EESKRIHLKALQNILNNAKSAH 175

Query: 169 ERFSL 173
            +F L
Sbjct: 176 FKFVL 180


>gi|315586878|gb|ADU41259.1| radical SAM domain protein [Helicobacter pylori 35A]
          Length = 251

 Score = 99.7 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 72/185 (38%), Gaps = 17/185 (9%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112
              K      ++   LIE           +  +LTGGEP L  + P LI  L     +  
Sbjct: 60  PKFKETWDYYNEPKSLIERLEDLAPNYKNFDFILTGGEPSLYFNNPILISVLEHFYHKKI 119

Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
            + VE+NG+I     P        +S K    L+    +E K +  +   +  N      
Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EESKRINLKALQNILNNAKSAH 175

Query: 169 ERFSL 173
            +F L
Sbjct: 176 FKFVL 180


>gi|48478135|ref|YP_023841.1| 6-pyruvoyltetrahydropterin 2'-reductase [Picrophilus torridus DSM
           9790]
 gi|48430783|gb|AAT43648.1| 6-pyruvoyltetrahydropterin 2'-reductase [Picrophilus torridus DSM
           9790]
          Length = 249

 Score = 99.7 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 25/143 (17%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQ-------------DRLSAQCRF- 49
             + ++F ++QGEG +AG+ A F RF  CNL+ G E+             +  S    + 
Sbjct: 3   IRLVDLFYSIQGEGRYAGKPAFFIRFPECNLFCGLEKPLKPGNYDQEYINNLKSVNAGWV 62

Query: 50  CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQAL 107
           CDT    +  + G + +++ + D I              V TGGEPL+     L  I A+
Sbjct: 63  CDTMAQWL--SNGFQIDINDIVDYISRL----SSGSYNIVFTGGEPLINRSNILKIIDAV 116

Query: 108 NKRG---FEIAVETNGTIEPPQG 127
           N +    +   +ETNGT+EP + 
Sbjct: 117 NSKNLKPYIYEIETNGTMEPIED 139


>gi|208434836|ref|YP_002266502.1| hypothetical protein HPG27_882 [Helicobacter pylori G27]
 gi|208432765|gb|ACI27636.1| hypothetical protein HPG27_882 [Helicobacter pylori G27]
          Length = 251

 Score = 99.7 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 17/185 (9%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQALNKRGFE--- 113
              K      ++   LIE           +  +LTGGEP L  + P++ ++ +  +    
Sbjct: 60  PKFKTSWDYYNEPKPLIERLENLAPNYKHFDFILTGGEPSLYFNNPILLSVLEHFYHKKI 119

Query: 114 -IAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
            + VE+NG+I     P        +S K    L+    QE K +  +   +  N      
Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----QESKRINLKALQNILNNAKSAH 175

Query: 169 ERFSL 173
            +F L
Sbjct: 176 FKFVL 180


>gi|317014342|gb|ADU81778.1| hypothetical protein HPGAM_04815 [Helicobacter pylori Gambia94/24]
          Length = 251

 Score = 99.7 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 77/202 (38%), Gaps = 23/202 (11%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGQRIGKPSLFLRLGGCNLSCKGFNCKTLFNDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQALNKRGFE--- 113
              +       +   LIE           +  +LTGGEP L  + P++ ++ +  +    
Sbjct: 60  PKFQTSWDYYSEPKPLIERLVNLAPNYKDFDLILTGGEPSLYFNNPILLSVLEHFYHKKI 119

Query: 114 -IAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
            + VE+NG+I     P        +S K    L+    QE K +  +   +  N+     
Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----QESKRINLKALQNILNHAKSVH 175

Query: 169 ERFSLQPMDGPFLEENTNLAIS 190
            +F L        +  T   I 
Sbjct: 176 FKFVL------ESQNATQSIIE 191


>gi|282163368|ref|YP_003355753.1| hypothetical protein MCP_0698 [Methanocella paludicola SANAE]
 gi|282155682|dbj|BAI60770.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 243

 Score = 99.3 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 89/260 (34%), Gaps = 78/260 (30%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56
           MK   I+EIF++ QGEG + G   +F RF  CNL           +C++CDT        
Sbjct: 1   MKS-PIREIFVSAQGEGPYVGYRQLFVRFPKCNL-----------ECQYCDTPKDWSSES 48

Query: 57  ---IQGTKGG------RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
              ++   G        ++ + L  +I+       +      LTGGEPLL      I+ L
Sbjct: 49  KCRVESKPGEFVEYDNPFSSEHLLSVIKLY-----ERIHSVSLTGGEPLLYAK--FIKEL 101

Query: 108 NKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLKIKGGQEL------------- 149
               F + +E+N T+          + ++    K       KG  E              
Sbjct: 102 KTSKFPLYLESNMTLPEGAKEVKDVVKYVSGDFKLKDQCDFKGHYEKYFNDTARSFSILR 161

Query: 150 ---------KLVFPQVNVSPE------NYIGFDFERFSLQPM---------DGPFLEENT 185
                    K++  + ++  E      + I        LQP+             L E  
Sbjct: 162 QTSFRDCFCKIIVSE-DIDREDMMHAVDQIKDCITELILQPVTPTGGVEAASSKLLLELQ 220

Query: 186 NLAISYCFQNPKWRLSVQTH 205
           + A+         R+  QTH
Sbjct: 221 DKALEKVE---NVRIIPQTH 237


>gi|308184717|ref|YP_003928850.1| hypothetical protein HPSJM_04750 [Helicobacter pylori SJM180]
 gi|308060637|gb|ADO02533.1| hypothetical protein HPSJM_04750 [Helicobacter pylori SJM180]
          Length = 251

 Score = 99.3 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 17/185 (9%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITG-EKEGRYCVLTGGEPLLQVDVPL----IQALNKRGF 112
              +      ++   LIE         +    +LTGGEP L  + P+    ++  + +  
Sbjct: 60  PKFQTSWDYYNEPKPLIERLVNLAPSYKDFDFILTGGEPSLYFNNPILLSVLEHFHHKKI 119

Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
            + VE+NG+I     P        +S K    L+    QE K +  +   +  N      
Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----QESKRINLKALQNILNNAKSAH 175

Query: 169 ERFSL 173
            +F L
Sbjct: 176 FKFVL 180


>gi|217033986|ref|ZP_03439409.1| hypothetical protein HP9810_883g56 [Helicobacter pylori 98-10]
 gi|216943619|gb|EEC23067.1| hypothetical protein HP9810_883g56 [Helicobacter pylori 98-10]
          Length = 251

 Score = 99.3 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 61/153 (39%), Gaps = 13/153 (8%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILNDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112
              K      ++   LIE           +  +LTGGEP L  + P LI  L     +  
Sbjct: 60  PKFKETWDYYNEPKSLIERLEDLAPNYKNFDFILTGGEPSLYFNNPILISVLEHFYHKKI 119

Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDL 141
            + VE+NG+I     P        +S K    L
Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSL 152


>gi|317009590|gb|ADU80170.1| radical SAM domain-containing protein [Helicobacter pylori India7]
          Length = 251

 Score = 98.9 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 75/199 (37%), Gaps = 19/199 (9%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTPFNDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITG-EKEGRYCVLTGGEPLLQVDVP-LIQALN---KRGF 112
              K      +    LIE         +    +LTGGEP L  + P L+  L    ++  
Sbjct: 60  PKFKETWDYYNDPKPLIERLVNLAPSYKDFDFILTGGEPSLYFNNPILLSVLEHFYRKKI 119

Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
            + VE+NG+I     P        +S K    L+    +E K +  +   +  N      
Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EESKRINLKALQNILNNAKSAH 175

Query: 169 ERFSLQPMDGPFLEENTNL 187
            +F L        +  T +
Sbjct: 176 FKFVLD--SQNAAQSITEI 192


>gi|325996217|gb|ADZ51622.1| Queuosine biosynthesis protein [Helicobacter pylori 2018]
 gi|325997811|gb|ADZ50019.1| Queuosine biosynthesis protein [Helicobacter pylori 2017]
          Length = 251

 Score = 98.9 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 17/185 (9%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLFNDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQALNKRGFE--- 113
              K      ++   LIE           +  +LTGGEP L  + P++ ++ +  +    
Sbjct: 60  PKFKTSWDYYNEPKPLIERLVNLAPNYKDFDFILTGGEPSLYFNNPILLSVLEHFYHKKI 119

Query: 114 -IAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
            + VE+NG+I     P        +S K    L+    QE K +  +   +  N      
Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----QESKRINLKALQNILNNAKSAH 175

Query: 169 ERFSL 173
            +F L
Sbjct: 176 FKFVL 180


>gi|307637623|gb|ADN80073.1| Queuosine Biosynthesis protein [Helicobacter pylori 908]
          Length = 251

 Score = 98.9 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 17/185 (9%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLFNDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQALNKRGFE--- 113
              K      ++   LIE           +  +LTGGEP L  + P++ ++ +  +    
Sbjct: 60  PKFKTSWDYYNEPKPLIERLVNLAPNYKDFDFILTGGEPSLYFNNPILLSVLEHFYHKKI 119

Query: 114 -IAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
            + VE+NG+I     P        +S K    L+    QE K +  +   +  N      
Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----QESKRINLKALQNILNNAKSAH 175

Query: 169 ERFSL 173
            +F L
Sbjct: 176 FKFVL 180


>gi|308183085|ref|YP_003927212.1| hypothetical protein HPPC_04700 [Helicobacter pylori PeCan4]
 gi|308065270|gb|ADO07162.1| hypothetical protein HPPC_04700 [Helicobacter pylori PeCan4]
          Length = 251

 Score = 98.6 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 61/153 (39%), Gaps = 13/153 (8%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQALN---KRGF 112
              K      ++   LIE           +  +LTGGEP L  + P LI  L     +  
Sbjct: 60  PKFKETWDYYNEPKSLIERLEDLTPNYKHFDFILTGGEPSLYFNNPILISVLEHFYHKKI 119

Query: 113 EIAVETNGTI----EPPQGIDWICVSPKAGCDL 141
            + VE+NG+I     P        +S K    L
Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSL 152


>gi|150401262|ref|YP_001325028.1| radical SAM domain-containing protein [Methanococcus aeolicus
           Nankai-3]
 gi|150013965|gb|ABR56416.1| Radical SAM domain protein [Methanococcus aeolicus Nankai-3]
          Length = 248

 Score = 98.6 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 87/257 (33%), Gaps = 65/257 (25%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS--GREQDRLSAQCRFCDTDFVGIQGTKGG 63
           I E+F ++ GEG   GR  +F RF GC L      E  +    CR    + V   G    
Sbjct: 2   ISEVFSSIMGEGKFIGRRYIFIRFKGCPLNCIYCDEYTKNDMPCRV---EEVSGSGIFKE 58

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
             N  +  +LIE        +      TGGEPLL  D        LN  G +  +E+NG 
Sbjct: 59  YINTAENNNLIEIINKIKTPDLFAISFTGGEPLLYADKIKEYSDILNDLGHKTHLESNG- 117

Query: 122 IEPPQGIDWICVSPKAGCDLKIKG----------------GQELKL-------------- 151
              P  I++   S     D+K+K                   ELK               
Sbjct: 118 -MFPDKINYFDYS---SIDIKLKEHFDFNNFNSKKYDELYNNELKSIEKLYNLGSDVYGK 173

Query: 152 VFPQVNVSPENYIGF--------DFERFSLQPMDG-----PFLEENTNLAISYCFQNPKW 198
           V    N +PE             D     +QP+          ++N    +  C  +   
Sbjct: 174 VVIMENTTPETVEQVAKDLSDIGDDIILCIQPVSPFKDIKSPSQQNLLKIMEVCGNH--- 230

Query: 199 RL--SV----QTHKFIG 209
            L  SV    Q HK++G
Sbjct: 231 -LGDSVICTSQIHKYLG 246


>gi|109947611|ref|YP_664839.1| hypothetical protein Hac_1076 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714832|emb|CAJ99840.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 230

 Score = 98.6 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 9/130 (6%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL     G +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGQRIGKPSLFLRLGGCNLSCKGFGCKTLFNDEILIGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPL----IQALNKRGF 112
              K      ++   LIE           +  +LTGGEP L  + P+    ++  +++  
Sbjct: 60  PKFKKSWDYYNEPKPLIERLVHLTPNHKNFDFILTGGEPSLYFNNPILTSVLEHFHRKKI 119

Query: 113 EIAVETNGTI 122
            + VE+NG+I
Sbjct: 120 PLFVESNGSI 129


>gi|15611935|ref|NP_223586.1| hypothetical protein jhp0868 [Helicobacter pylori J99]
 gi|4155435|gb|AAD06440.1| putative [Helicobacter pylori J99]
          Length = 251

 Score = 98.6 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 13/157 (8%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLFNDEILTGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQALNKRGFE--- 113
              K      ++   LIE           +  +LTGGEP L  + P++ ++ +  +    
Sbjct: 60  PKFKTSWDYYNEPKPLIERLVNLAPNYKDFDFILTGGEPSLYFNNPILLSVLEHFYHKKI 119

Query: 114 -IAVETNGTI----EPPQGIDWICVSPKAGCDLKIKG 145
            + VE+NG+I     P        +S K    L+ + 
Sbjct: 120 PLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEQES 156


>gi|75906966|ref|YP_321262.1| radical SAM family protein [Anabaena variabilis ATCC 29413]
 gi|75700691|gb|ABA20367.1| Radical SAM [Anabaena variabilis ATCC 29413]
          Length = 264

 Score = 98.6 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 60/267 (22%), Positives = 90/267 (33%), Gaps = 78/267 (29%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ------ 58
            + E+F  +QGEG + G   +F RF+ C+L           +C FCD+            
Sbjct: 12  RLVEVFSAIQGEGLNVGTRQIFIRFAFCDL-----------RCHFCDSAHTWNAPASCRI 60

Query: 59  ---------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
                     +      +  L + +E Q +    +     LTGGEPLL    P +Q    
Sbjct: 61  ERSPGLRDFESHPNPVPLTTLIEWVERQNLPCLHDS--ISLTGGEPLLHA--PFLQEFLP 116

Query: 110 R-----GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK--GGQELKLVFPQV----NV 158
           +     G  I +ET G   P Q    +      G DLK+    G+       Q     + 
Sbjct: 117 KVRSLTGLPIYLETGG-HRPEQLATILPYLDSVGMDLKLPSVSGESHWQAHSQFLQLCHS 175

Query: 159 SPENYIGF---------DFERFSL-----QPMDGPFLEENTNLAI-SYCFQNPK------ 197
             E ++           + ER +L      P    FL+  T LA      Q P       
Sbjct: 176 QSETFVKIIISHRTDLAELERAALLVADVSPEIPVFLQPVTPLAESDQFSQTPALAPAPA 235

Query: 198 ----WRLSV-----------QTHKFIG 209
               W+ S+           QTHK + 
Sbjct: 236 DVLTWQTSMKRFLKYVRVVPQTHKMLN 262


>gi|188527756|ref|YP_001910443.1| hypothetical protein HPSH_04915 [Helicobacter pylori Shi470]
 gi|188143996|gb|ACD48413.1| hypothetical protein HPSH_04915 [Helicobacter pylori Shi470]
          Length = 251

 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 73/187 (39%), Gaps = 21/187 (11%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVG- 56
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59

Query: 57  --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALN---KR 110
              + T         L + +E+       +    +LTGGEP L  + P LI  L     +
Sbjct: 60  PKFKETWDYYNEPQSLIERLEDLTPN--YKNFDFILTGGEPSLYFNNPILISVLEHFYHK 117

Query: 111 GFEIAVETNGTIE----PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
              + VE+NG+I     P        +S K    L+    +E K +  +   +  N    
Sbjct: 118 KIPLFVESNGSIFFEFNPILKELHFTLSVKLSFSLE----EESKRINLKALQNILNNAKS 173

Query: 167 DFERFSL 173
              +F L
Sbjct: 174 AHFKFVL 180


>gi|109947617|ref|YP_664845.1| hypothetical protein Hac_1082 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714838|emb|CAJ99846.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 251

 Score = 98.2 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 9/130 (6%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGI 57
           MKL  + E F +LQGEG   G+ ++F R  GCNL     G +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGQRIGKPSLFLRLGGCNLSCKGFGCKTLFNDEILIGCDSLYAVH 59

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPL----IQALNKRGF 112
              K      ++   LIE           +  +LTGGEP L  + P+    ++  +++  
Sbjct: 60  PKFKKSWDYYNEPKPLIERLVHLTPNHKNFDFILTGGEPSLYFNNPILTSVLEHFHRKKI 119

Query: 113 EIAVETNGTI 122
            + VE+NG+I
Sbjct: 120 PLFVESNGSI 129


>gi|317052127|ref|YP_004113243.1| Radical SAM domain-containing protein [Desulfurispirillum indicum
           S5]
 gi|316947211|gb|ADU66687.1| Radical SAM domain protein [Desulfurispirillum indicum S5]
          Length = 240

 Score = 98.2 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 87/250 (34%), Gaps = 58/250 (23%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ------G 59
           I+E+F ++QGEG   GR  +F R  GCNL            C +CDT    I        
Sbjct: 5   IQEMFWSVQGEGPRCGRPQLFVRLHGCNLT-----------CSYCDTPASLIPRAPQSFP 53

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALN-KRGFEIAV 116
             G         + ++              +TGGEPL Q D      + L      E+ +
Sbjct: 54  WHGRTVPNPVPLEFLQTLVAPELPFVESVSITGGEPLCQGDFVAAFGRWLCQDMAMEVLL 113

Query: 117 ETNGTIE--PPQGIDWICVSPKAGCDLKIK-------GGQEL---------------KLV 152
           ETNGT      +  D   +      DLK            EL               K++
Sbjct: 114 ETNGTFPGWLKENTDSFSL---VSADLKFPWAQQHRDTAGELLDFLQSRQQSCQDSCKII 170

Query: 153 FPQVNVSPE----NYIGFDFERF--SLQPM-----DGPFLEENTNLAISYCFQNPKWRLS 201
                ++      +++     RF   LQP+         +EE+  L  +Y  +  +  L 
Sbjct: 171 CDDAFLACASHWLDHMVERGARFPVVLQPLTAADGSCRGVEESMKLVRTYTERGLRIWLI 230

Query: 202 VQTHKFIGIR 211
            Q H  +G++
Sbjct: 231 PQMHHLLGVQ 240


>gi|291277034|ref|YP_003516806.1| hypothetical protein HMU08200 [Helicobacter mustelae 12198]
 gi|290964228|emb|CBG40077.1| putative hypothetical protein [Helicobacter mustelae 12198]
          Length = 286

 Score = 97.8 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 56/163 (34%), Gaps = 41/163 (25%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ---CRFCDTDFVGI 57
           M++  I EIF +LQGEG   G  +VF R   CNL      +RL  +      CD+ +   
Sbjct: 1   MQILKISEIFYSLQGEGSAIGMPSVFVRVGLCNLRCKGFGERLRYRGEEILGCDSIYAAN 60

Query: 58  QGTKGGRYNVDQLADLIEEQWIT----------------------------------GEK 83
              +      +   +LI   +                                       
Sbjct: 61  PKFQEEWREFESSKELISAIFAAVCGNLGSSVDAALRGEAGDFSSAQVGGDALLEAPEPL 120

Query: 84  EGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNGTI 122
                VLTGGEP L    P     I+    R   I+VE+NG++
Sbjct: 121 PPFDIVLTGGEPSLYFQNPALLGAIEFFLARHHRISVESNGSV 163


>gi|21226857|ref|NP_632779.1| hypothetical protein MM_0755 [Methanosarcina mazei Go1]
 gi|20905160|gb|AAM30451.1| conserved protein [Methanosarcina mazei Go1]
          Length = 255

 Score = 97.8 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 22/127 (17%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
           +++E+F ++QGEG + G    F RFSGCNL            C +CDT+F         R
Sbjct: 10  NLREVFCSVQGEGPYVGMRQAFVRFSGCNL-----------SCNYCDTNFRNPGTYDYER 58

Query: 65  YNVDQLADLIE--------EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
                + + +         E  +   K+     LTGGEPLL  D   I+ L      + +
Sbjct: 59  VEGSGVFEKVSNPVNIEKLESMLQPFKDLHSVSLTGGEPLLHAD--FIEKL-NLSVPLYL 115

Query: 117 ETNGTIE 123
           E+N T+ 
Sbjct: 116 ESNMTLP 122


>gi|308063762|gb|ADO05649.1| hypothetical protein HPSAT_04565 [Helicobacter pylori Sat464]
          Length = 251

 Score = 97.4 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 17/155 (10%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQC---RFCDTDFVG- 56
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVH 59

Query: 57  --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALN---KR 110
              + T         L + +E+       +    +LTGGEP L  + P LI  L     +
Sbjct: 60  PKFKETWDYYNEPKSLIERLEDLTPN--YKNFDFILTGGEPSLYFNNPILISVLEHFYHK 117

Query: 111 GFEIAVETNGTI----EPPQGIDWICVSPKAGCDL 141
              + VE+NG+I     P        +S K    L
Sbjct: 118 KIPLFVESNGSIFFEFSPILKELHFTLSVKLSFSL 152


>gi|322667095|gb|EFY63267.1| hypothetical protein SEEM507_17615 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MD_MDA09249507]
          Length = 81

 Score = 97.4 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 14/89 (15%)

Query: 4  YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
          Y I E+F TLQGEG   G  A+F R  GC +            C +CDT           
Sbjct: 3  YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTW-DKLSDR 50

Query: 64 RYNVDQLADLIEE--QWITGEKEGRYCVL 90
            ++  +    +E  +W     E    V+
Sbjct: 51 EVSLFSILAKTKESDKWGAASSEDLLAVI 79


>gi|91773249|ref|YP_565941.1| radical SAM family Fe-S protein [Methanococcoides burtonii DSM
           6242]
 gi|91712264|gb|ABE52191.1| Fe-S protein, radical SAM family [Methanococcoides burtonii DSM
           6242]
          Length = 238

 Score = 97.0 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 50/127 (39%), Gaps = 22/127 (17%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD--------FVG 56
            I EIF ++QGEG H G    F RF GCNL            C +CDT+        F  
Sbjct: 4   PISEIFCSVQGEGPHVGVRQAFVRFIGCNL-----------NCSYCDTEPADPSVCMFER 52

Query: 57  IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
             G+       + L      + +          LTGGEPLL  D   I  +      + +
Sbjct: 53  TPGSNSFENIPNPLVTSQVSELLGNYGNIHSVSLTGGEPLLHAD--FISKM-DIPHLLYL 109

Query: 117 ETNGTIE 123
           E+N T+ 
Sbjct: 110 ESNMTLP 116


>gi|296284595|ref|ZP_06862593.1| coenzyme PQQ synthesis protein, conjectural [Citromicrobium
           bathyomarinum JL354]
          Length = 208

 Score = 96.6 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 26/132 (19%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------QGTK 61
           EIF ++QGEG  AG    F R S CNL            C +CDT +             
Sbjct: 22  EIFASVQGEGPSAGEPTAFVRLSRCNL-----------ACVWCDTAYTWHFAGDERPHRS 70

Query: 62  GGRYN------VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
           G  ++        ++ D+       G+   R  V+TGGEP+LQ               + 
Sbjct: 71  GQTFDRKANQVTLEVEDVAARIAALGQ---RRLVVTGGEPMLQAPALAQLLALLPDVTVE 127

Query: 116 VETNGTIEPPQG 127
           +ETNGT  P   
Sbjct: 128 IETNGTAFPRPS 139


>gi|317180219|dbj|BAJ58005.1| hypothetical protein HPF32_0423 [Helicobacter pylori F32]
          Length = 251

 Score = 96.2 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 17/155 (10%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVG- 56
           MKL  + E F +LQGEG   G+ ++F R  GCNL       +          CD+ +   
Sbjct: 1   MKL-PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILYDEILMGCDSLYAVH 59

Query: 57  --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALN---KR 110
              + T         L + +E+       +    +LTGGEP L  + P LI  L     +
Sbjct: 60  PKFKETWDYYNEPKSLIERLEDLTPN--YKNFDFILTGGEPSLYFNNPILISVLEHFYHK 117

Query: 111 GFEIAVETNGTI----EPPQGIDWICVSPKAGCDL 141
              + VE+NG+I     P        +S K    L
Sbjct: 118 KIPLFVESNGSIFFEFSPILKELHFTLSVKLSFSL 152


>gi|289674681|ref|ZP_06495571.1| radical SAM family protein [Pseudomonas syringae pv. syringae
          FF5]
          Length = 76

 Score = 95.9 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 20/93 (21%)

Query: 3  LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
             I EIF +LQGE   AG   VF R +GC L           +C++CD+ +    GT  
Sbjct: 4  TLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGGT-- 50

Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
              +  L D++ +         RY  +TGG P
Sbjct: 51 ----IQTLDDILGQ---VASYRPRYVCVTGGAP 76


>gi|17231653|ref|NP_488201.1| hypothetical protein alr4161 [Nostoc sp. PCC 7120]
 gi|17133296|dbj|BAB75860.1| alr4161 [Nostoc sp. PCC 7120]
          Length = 264

 Score = 95.9 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 60/267 (22%), Positives = 89/267 (33%), Gaps = 78/267 (29%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ------ 58
            + E+F  +QGEG + G   +F RF+ C+L           +C FCD+            
Sbjct: 12  RLVEVFSAIQGEGLNVGTRQIFIRFAFCDL-----------RCHFCDSAHTWNAPASCRI 60

Query: 59  ---------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
                     +      +  L + +E Q +    +     LTGGEPLL    P +Q    
Sbjct: 61  ERSPGLRDFESHPNPVPLTTLIEWVERQNLPCLHDS--ISLTGGEPLLHA--PFLQEFLP 116

Query: 110 R-----GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK--GGQELKLVFPQVNV---- 158
           +     G  I +ET G   P Q    +      G DLK+    G+       Q       
Sbjct: 117 KVRSLTGLPIYLETGG-HRPEQLATILPYLDSVGMDLKLPSVSGESHWQAHSQFLQLCLT 175

Query: 159 SPENYIGF---------DFERFSL-----QPMDGPFLEENTNLAISYCFQNPK------- 197
             E ++           + ER +L      P    FL+  T LA S  F           
Sbjct: 176 QSETFVKIIISHRTNLAELERAALLVADVSPEIPVFLQPVTPLAESEQFSPTPALAPAPA 235

Query: 198 ----WRLSV-----------QTHKFIG 209
               W+ S+           QTHK + 
Sbjct: 236 DVLTWQASMKRFLKYVRVVPQTHKMLN 262


>gi|78222867|ref|YP_384614.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78194122|gb|ABB31889.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 250

 Score = 95.5 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 64/252 (25%), Positives = 88/252 (34%), Gaps = 67/252 (26%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF------VGIQGTK 61
           E+F ++QGEG   G   VF RF GCNL            C +CDT          ++ T 
Sbjct: 10  EVFSSVQGEGMLIGLRQVFVRFRGCNLT-----------CDYCDTPTEITAEPCLVEQTP 58

Query: 62  GGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG-- 111
           G R          +D++  LI+              +TGGEPLL     L   L +    
Sbjct: 59  GRRDFVPTANPVALDRIVSLIDGWQRGWPGVHHSISITGGEPLL-SHTVLSAWLPELRNI 117

Query: 112 FEIAVETNGTIEPPQG--IDWICVSPKAGCDLKIKG----------------GQELKLVF 153
             + +ETNG +    G  ID I +    G D+KI                      K VF
Sbjct: 118 LPVYLETNGIMHSVLGLLIDHIDI---IGMDIKIPSTSGCTGLWDDHRSFLQIAARKNVF 174

Query: 154 PQVNVSPENYIGFDFER------------FSLQPMDGPFLE--ENTNLAISY----CFQN 195
            ++ V  E                       LQP+  P      N   A+ +    C   
Sbjct: 175 VKIIVGDETEEWEIIRASELIAAINSHIPLILQPVTEPGGRVGINPVRALEFQEIACRHL 234

Query: 196 PKWRLSVQTHKF 207
            + R+  QTHKF
Sbjct: 235 DEVRIIPQTHKF 246


>gi|213422189|ref|ZP_03355255.1| hypothetical protein Salmonentericaenterica_32418 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 109

 Score = 95.5 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 9/93 (9%)

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
           +  K G  + + L  +I  Q        R+ V+TGGEP +   +PL   L K GF   +E
Sbjct: 19  ESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIE 74

Query: 118 TNGTIEPPQGI-DWICVSPKAGCDLKIKGGQEL 149
           T+GT E       W+ VSPK    + ++GG ++
Sbjct: 75  TSGTHEVRCTPNTWVTVSPK----VNMRGGYDV 103


>gi|289667003|ref|ZP_06488078.1| putative radical activating enzyme [Xanthomonas campestris pv.
          musacearum NCPPB4381]
          Length = 90

 Score = 95.5 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 20/95 (21%)

Query: 1  MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
          +    I EIFL+LQGE   AG   VF R +GC L           +C +CDT +      
Sbjct: 15 LPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAYAFH--- 60

Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
           G  + +D +   +    +      R+  +TGG P
Sbjct: 61 GGEWHEIDAIVAEVARHGV------RHVCVTGGPP 89


>gi|298491364|ref|YP_003721541.1| radical SAM domain-containing protein ['Nostoc azollae' 0708]
 gi|298233282|gb|ADI64418.1| Radical SAM domain protein ['Nostoc azollae' 0708]
          Length = 265

 Score = 95.1 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 80/269 (29%), Gaps = 81/269 (30%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT---- 60
            + E+F  +QGEG + G   +F RF  C+L           +C FCD+       +    
Sbjct: 12  RLVEVFSAIQGEGLNVGTRQIFIRFGLCDL-----------RCHFCDSAHTWDAPSLCKI 60

Query: 61  -----------KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN- 108
                               L   +E Q +    +     LTGGEPLL    P +     
Sbjct: 61  ELSPGLRDFEMHSNPIPPATLIKWVERQNLPFLHDS--ISLTGGEPLLHA--PFLAQFLP 116

Query: 109 ----KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG-GQE--------------- 148
               +    I +ET G       +  +      G DLK+     E               
Sbjct: 117 EVRAQTNLPIYLETGGHRPDQLAM-ILPYLDSVGMDLKLPSVSGETHWTEHKEFLQICFE 175

Query: 149 ------LKLVFPQVNVSPE--------NYIGFDFERFSLQPM----------DGPFLEEN 184
                 +K++  Q     E          +G D     LQP+            P     
Sbjct: 176 ANLDIFVKIIVSQRTDPGELERSALLVAEVGQDIP-IFLQPVTPLAESQQFSSVPVEAPA 234

Query: 185 TNLAISY--CFQNP--KWRLSVQTHKFIG 209
               + +    +    + R+  QTHK + 
Sbjct: 235 PQQVLEWQALMKKFVKQVRVIPQTHKMLN 263


>gi|228996543|ref|ZP_04156182.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus mycoides Rock3-17]
 gi|228763175|gb|EEM12083.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus mycoides Rock3-17]
          Length = 220

 Score = 95.1 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 22/153 (14%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       ++  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSSFTW-DGSAKEQIRQMTPEEIWSELVE 50

Query: 80  TGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P LL+     +  L ++    A+ET G+   E    ID I +SPK
Sbjct: 51  IGGENFSHVTISGGNPVLLKNIDDFLSLLQEKQIRTAIETQGSKWQEWLLHIDEITISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
                      ++K  F  ++   E   G DF 
Sbjct: 111 PPSS-------QMKTDFIMLDSVIERLAGKDFS 136


>gi|228990442|ref|ZP_04150407.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus pseudomycoides DSM 12442]
 gi|229004193|ref|ZP_04161994.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus mycoides Rock1-4]
 gi|228757054|gb|EEM06298.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus mycoides Rock1-4]
 gi|228768968|gb|EEM17566.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
           [Bacillus pseudomycoides DSM 12442]
          Length = 220

 Score = 95.1 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 22/153 (14%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            G+  +F R +GC+             C +CD+ F    G+   +       ++  E   
Sbjct: 3   VGQKTMFIRTAGCDY-----------SCAWCDSSFTW-DGSAKEQIRQMTPEEIWSELVE 50

Query: 80  TGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPK 136
            G +   +  ++GG P LL+     +  L ++    A+ET G+   E    ID I +SPK
Sbjct: 51  IGGENFSHVTISGGNPVLLKNIDDFLSLLQEKQIRTAIETQGSKWQEWLLHIDEITISPK 110

Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
                      ++K  F  ++   E   G DF 
Sbjct: 111 PPSS-------QMKTDFIMLDSVIERLAGKDFS 136


>gi|186684456|ref|YP_001867652.1| radical SAM domain-containing protein [Nostoc punctiforme PCC
           73102]
 gi|186466908|gb|ACC82709.1| Radical SAM domain protein [Nostoc punctiforme PCC 73102]
          Length = 265

 Score = 94.7 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 60/268 (22%), Positives = 90/268 (33%), Gaps = 79/268 (29%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-------I 57
            + E+F  +QGEG + G   +F RF+ C+L           +C FCD+           I
Sbjct: 12  RLVEVFSAIQGEGLNVGTRQIFIRFALCDL-----------RCHFCDSAHTWNAPATCRI 60

Query: 58  QGTKGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
           + + G R          +  L + +E+Q +    +     LTGGEPLL     L Q L +
Sbjct: 61  ERSPGLRDFEIHSNPVPLPILIEWVEQQNLPCLHDS--ISLTGGEPLLHAPF-LTQFLPQ 117

Query: 110 ----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG------GQE----------- 148
                G  I +ET G       +  +      G D K+         QE           
Sbjct: 118 VRAITGLPIYLETGGHRSEQLAM-ILPYLDSVGMDFKLPSVSGESHWQEHAKFLQLCHDS 176

Query: 149 -----LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAI-----SYCFQNP-- 196
                +K++  Q N  P            + P    FL+  T LA+     S     P  
Sbjct: 177 YLNVFVKIIVSQ-NTDPGELERSASLVAKVSPDIPVFLQPVTPLAVSEQFSSILMLAPTP 235

Query: 197 ---------------KWRLSVQTHKFIG 209
                            R+  QTHK + 
Sbjct: 236 DQVLTWQALMKGFIKHVRVIPQTHKMLN 263


>gi|213617522|ref|ZP_03372348.1| radical SAM domain protein [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-2068]
          Length = 59

 Score = 94.3 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 11/55 (20%)

Query: 4  YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
          Y I E+F TLQGEG   G  A+F R  GC +            C +CDT     +
Sbjct: 3  YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDK 46


>gi|6066247|gb|AAF03232.1|AF156097_12 ORF12 [Pyrococcus furiosus]
          Length = 218

 Score = 93.5 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 35/165 (21%)

Query: 8   EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTK 61
           EIF + QGEGG       GR  +F RF+GC+L           +C +CD+  ++  +  K
Sbjct: 8   EIFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------RCTYCDSRKYIDPRSVK 56

Query: 62  GGRYNVD-------------QLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQA 106
             R  V+              + ++I+        +      TGGEP LQ+     L++ 
Sbjct: 57  KYRVEVEPFSGKFKYFNNPVDVEEVIKWITKLDTGDIHSISYTGGEPTLQILGLASLMEK 116

Query: 107 LNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIKGGQELK 150
             + G++  +ET+G      + I ++     A  D+K +     K
Sbjct: 117 AKELGYDNFLETHGGHPHLIKKIAYLT--DYASVDIKDESANATK 159


>gi|118577062|ref|YP_876805.1| organic radical activating enzyme [Cenarchaeum symbiosum A]
 gi|118195583|gb|ABK78501.1| organic radical activating enzyme [Cenarchaeum symbiosum A]
          Length = 238

 Score = 93.2 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 89/252 (35%), Gaps = 59/252 (23%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M    + EIF +++GEG   G   +F R +GC              C +CDT+   +   
Sbjct: 1   MLNVRLYEIFTSIEGEGVLFGTKTLFVRLAGCPF-----------GCYYCDTEEA-LPAD 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN--KRGFEIAVET 118
            G  + +++   +I++       +      TGGEPL+Q +     A +    G    +E+
Sbjct: 49  SGEEHTMEEACRMIDDAIQPNTYK---VNFTGGEPLVQHEAVAGMARHVQSSGVPTYLES 105

Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLV-------FPQVNVSPENYIG 165
           +   +          ID + V  K      ++ GQ  ++V          V++  E YI 
Sbjct: 106 S-CYDADRFRTVIPHIDIVKVEFKTADSAFVEEGQHPRIVRSATECLRAAVDLGRETYIK 164

Query: 166 F-------------------------DFERFSLQPMDGPFLEENTNLAISYCFQNP---K 197
                                     D   F +QP+ GP       L   +    P   K
Sbjct: 165 VVAGEGTKPGPFAELVGGIFSEVSNDDISGFVIQPVTGPGAPTLDALLELHDIVRPYSNK 224

Query: 198 WRLSVQTHKFIG 209
            R+  Q HK IG
Sbjct: 225 VRVIPQLHKAIG 236


>gi|319789546|ref|YP_004151179.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
 gi|317114048|gb|ADU96538.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
          Length = 219

 Score = 92.4 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 87/245 (35%), Gaps = 62/245 (25%)

Query: 3   LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
           + +I E F+++QGEG   G  A F R   C           S  CRFCDT +     +  
Sbjct: 1   MITICETFVSVQGEGLTVGTPAFFIRTGKC-----------SVGCRFCDTKYSW---SSR 46

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGG-EPLLQVDVPLIQALNKRG--FEIAVETN 119
            R +V++L    E          +  ++TGG     +    L+ AL +     ++ VET 
Sbjct: 47  ERKSVEELVAEAERAG------FQTVIVTGGEPLEEEELPHLLTALKRAKPVKQVIVETC 100

Query: 120 GT---IEPPQGIDWICVSPKAG------------CDLKIKGGQELKLV------FPQVNV 158
           G     + P+ +  + +SPK                LK     ELK          ++  
Sbjct: 101 GHTFRDDLPRNVRLV-LSPKPPSMGVPFPFESVKAFLKHYREVELKFTLFNGEDLKRIKE 159

Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYC------------FQNPKWRLSVQTHK 206
             E   G        QP++ P  +         C             +   +R+  Q HK
Sbjct: 160 FIEESEGLLPSPVVFQPLETPLEDYG-----KTCKRVAQMLLSDGELRKLPFRVIPQVHK 214

Query: 207 FIGIR 211
            IG++
Sbjct: 215 LIGLK 219


>gi|159905256|ref|YP_001548918.1| radical SAM domain-containing protein [Methanococcus maripaludis
           C6]
 gi|159886749|gb|ABX01686.1| Radical SAM domain protein [Methanococcus maripaludis C6]
          Length = 242

 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 88/250 (35%), Gaps = 57/250 (22%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD-------TDFVGIQ 58
           I+E+F ++ GEG   G+  +F RF  C L            C +CD       T  V   
Sbjct: 2   IREVFSSIMGEGKFIGKRFIFVRFKECPL-----------DCIYCDEPNAPGGTARVEEI 50

Query: 59  GTKGGRYNVDQLA-DLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIA 115
              G      +L  +LIE        +      TGGEPLL  +      + L ++G++  
Sbjct: 51  SGSGEFTEYLELDHELIETIEKLRTPDLFAVSFTGGEPLLYSNKIKKYSEILKQKGYKTF 110

Query: 116 VETNGTIE-PPQGIDWICVSPKAG-----------CDLKIKGGQELK------------- 150
           +E+NG       G D+  +  K              DL  K  + ++             
Sbjct: 111 LESNGMFPEKLDGYDYASIDIKLPEHFENKDDDFWYDLYTKELETIERLYLAGTDVYAKI 170

Query: 151 LVFPQVNVSPENYIGFDFERF-----SLQPMDGPFLEENTN------LAISYCFQNPKWR 199
           +VF + +      I  D  +       +QP+      + T         ++ C +     
Sbjct: 171 VVFEETSEELIERIARDLSKIGNITLCIQPVSPTDRIKATTSKKKIFELMAICGRYVDVM 230

Query: 200 LSVQTHKFIG 209
            + Q HK++G
Sbjct: 231 CTPQIHKWMG 240


>gi|213422146|ref|ZP_03355212.1| hypothetical protein Salmonentericaenterica_32183 [Salmonella
          enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 43

 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 11/52 (21%)

Query: 4  YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV 55
          Y I E+F TLQGEG   G  A+F R  GC +            C +CDT   
Sbjct: 3  YPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHT 43


>gi|34419518|ref|NP_899531.1| conserved hypothetical protein [Vibrio phage KVP40]
 gi|34333199|gb|AAQ64354.1| conserved hypothetical protein [Vibrio phage KVP40]
          Length = 293

 Score = 89.7 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 34/156 (21%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-------------------- 46
            E+F ++QGEG + G+ ++F RF GCNL                                
Sbjct: 6   TEMFYSIQGEGKYTGQASLFFRFWGCNLECHGFGQEDPTNKDTWVLDFKDYDPKANNVTS 65

Query: 47  -------CRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
                   R CD+ +   +       +  V  + + + E+         + V+TGGEP++
Sbjct: 66  VEDLPVWTRGCDSSYTWAKKYAHLASKSEVADVCEAMLEKLPNRVWGDIHWVITGGEPMM 125

Query: 98  --QVDVPLIQALNKRG---FEIAVETNGTIEPPQGI 128
                + ++    K       + +ETNGT E     
Sbjct: 126 NQAQIIEMMNYFIKIDNYPKHVTIETNGTRELKPEF 161


>gi|150402999|ref|YP_001330293.1| radical SAM domain-containing protein [Methanococcus maripaludis
           C7]
 gi|150034029|gb|ABR66142.1| Radical SAM domain protein [Methanococcus maripaludis C7]
          Length = 242

 Score = 89.7 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 87/255 (34%), Gaps = 67/255 (26%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD-------TDFVGIQ 58
           I+E+F ++ GEG   G+  +F RF  C L            C +CD       T  V   
Sbjct: 2   IREVFSSIMGEGKFIGKRFIFVRFKECPL-----------DCIYCDEPNTPGGTARVEEV 50

Query: 59  GTKGGRYNVDQLA-DLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIA 115
              G      +L  +LIE        +      TGGEPLL  +      + L  +G++  
Sbjct: 51  SGSGDFTEYLELENELIEIIEKLRTPDLFAVSFTGGEPLLYPNKIKQYSEILKHKGYKTF 110

Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK------------------------- 150
           +E+NG    P+ +D       A  D+K+    E K                         
Sbjct: 111 LESNG--MFPERLDSY---DYASIDIKLPEHFENKDDDFWYNLYSKELETIERLYLAGTD 165

Query: 151 -----LVFPQVNVSPENYIGFDFERF-----SLQPMDGPFLEENTN------LAISYCFQ 194
                +VF + +      I  D  +       +QP+      + T         ++ C +
Sbjct: 166 VYAKIVVFEETSEELIERIARDLSKIGNITLCIQPVSPTDRIKATTSKKKIFELMAICGR 225

Query: 195 NPKWRLSVQTHKFIG 209
                 + Q HK++G
Sbjct: 226 YVDVMCTPQIHKWMG 240


>gi|114776301|ref|ZP_01451346.1| radical activating enzyme family protein [Mariprofundus
           ferrooxydans PV-1]
 gi|114553131|gb|EAU55529.1| radical activating enzyme family protein [Mariprofundus
           ferrooxydans PV-1]
          Length = 196

 Score = 88.5 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 70/212 (33%), Gaps = 49/212 (23%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
               F R +GC L           +C +CDT    I    G    +D +   ++      
Sbjct: 1   MACTFIRLAGCPL-----------RCTYCDTPQA-IPFDSGEWMQIDDIVTDVQ------ 42

Query: 82  EKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140
           ++     ++TGGEPL Q     L+  L   G E+ +ET+G          + V  +   D
Sbjct: 43  KRNRPLVLVTGGEPLAQRHCSELLSELLALGCEVQLETSGAYPLAS----LPVGVRRIVD 98

Query: 141 LKIKG-----------------GQELKLVFP-------QVNVSPENYIGFDFERFSLQPM 176
           LK  G                 G E+K+V            +  ++ +G       L   
Sbjct: 99  LKTPGSGEAERNRLDNLSCLCAGDEIKMVLTSRADYQWAAAMIEQHRLGQGDVPVLLSAA 158

Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
            G    E   L           RL +Q HK I
Sbjct: 159 WGSLKAE--ELCQWMLDDRLPARLQLQLHKVI 188


>gi|134046626|ref|YP_001098111.1| radical SAM domain-containing protein [Methanococcus maripaludis
           C5]
 gi|132664251|gb|ABO35897.1| Radical SAM domain protein [Methanococcus maripaludis C5]
          Length = 242

 Score = 88.5 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 87/255 (34%), Gaps = 67/255 (26%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD-------TDFVGIQ 58
           I+E+F ++ GEG   G+  +F RF  C L            C +CD       T  V   
Sbjct: 2   IREVFSSIMGEGKFIGKRFIFVRFKECPL-----------DCIYCDEPNAPGGTARVEEV 50

Query: 59  GTKGGRYNVDQLA-DLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIA 115
              G      +L  +LI+        +      TGGEPLL  +      + L  +G++  
Sbjct: 51  SGSGDFMEYLELEHELIDIIEKLRTPDLFAVSFTGGEPLLYSNKIKQYSEILKHKGYKTF 110

Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK------------------------- 150
           +E+NG    P+ +D       A  D+K+    E K                         
Sbjct: 111 LESNG--MFPERLDSY---DYASIDIKLPEHFENKEDEFWYDLYSKELETIERLYLAGTD 165

Query: 151 -----LVFPQVNVSPENYIGFDFERF-----SLQPMDGPFLEENTN------LAISYCFQ 194
                +VF + +      I  D  +       +QP+      + T         ++ C +
Sbjct: 166 VYAKIVVFEETSEELIERIARDLSKIGNITLCIQPVSPTDKIKATTSKKKLFELMAICGR 225

Query: 195 NPKWRLSVQTHKFIG 209
                 + Q HK++G
Sbjct: 226 YVDVMCTPQIHKWMG 240


>gi|119513185|ref|ZP_01632233.1| hypothetical protein N9414_13008 [Nodularia spumigena CCY9414]
 gi|119462172|gb|EAW43161.1| hypothetical protein N9414_13008 [Nodularia spumigena CCY9414]
          Length = 265

 Score = 86.6 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/271 (21%), Positives = 92/271 (33%), Gaps = 85/271 (31%)

Query: 5   SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-------I 57
            + E+F  +QGEG + G   +F RF+ C+L           +C FCD+           I
Sbjct: 12  RLIEVFSAIQGEGLNVGTRQLFIRFALCDL-----------RCHFCDSAHTWNAPATCRI 60

Query: 58  QGTKGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
           + T G R         ++  L   +E Q +    +     LTGGEPLL      ++    
Sbjct: 61  ELTPGLRDFEIHSNPVSLPILIQWVERQNLPCLHDS--ISLTGGEPLLHA--AFLKEFLP 116

Query: 110 R-----GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK--GGQELKL----------- 151
           +        I +E +G   P Q    +      G DLK+    G+ L             
Sbjct: 117 QVRSLTNLPIYLE-SGGHRPEQLAMVLPYLDSVGMDLKLPSVSGESLWTEHTNFLQLCFN 175

Query: 152 ----VFPQVNVSPENYIGFDFER-------------FSLQPMDGPFLEENTNLAISYCFQ 194
               VF ++ +S  N    + ER               LQP+    L  +  L  +    
Sbjct: 176 THLEVFVKIIISD-NTDPAELERSAAMVADVSPDIPIFLQPV--TPLAASEQLTETPVLA 232

Query: 195 N----------------PKWRLSVQTHKFIG 209
                            P+ R+  QTHK + 
Sbjct: 233 PAPEKVLMWQALMKQFVPQVRVIPQTHKMLN 263


>gi|57168667|ref|ZP_00367799.1| radical SAM domain protein, putative [Campylobacter coli RM2228]
 gi|57019948|gb|EAL56628.1| radical SAM domain protein, putative [Campylobacter coli RM2228]
          Length = 224

 Score = 86.6 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 64/160 (40%), Gaps = 17/160 (10%)

Query: 27  CRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            RF+GCN      G +  +     + CDT            Y +   ++L +      + 
Sbjct: 1   MRFAGCNFNCSGFGVKLIKNGKTLKGCDTIRAVFTKEFNEEYEILNASELFKRVLDLKKD 60

Query: 84  EGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNGTIE------PPQGIDWICV 133
                V+TGGEPL+  + P     IQAL K  FE+  E+NG+IE      P        +
Sbjct: 61  FNPIVVITGGEPLIHHENPEFIDFIQALLKNNFEVHFESNGSIELDFEKYPFYKECVFAL 120

Query: 134 SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
           S K         G+E +L F  +    ++Y    F +F L
Sbjct: 121 SVKLQNSGM---GKEKRLNFNALK-GFKHYAKDSFYKFVL 156


>gi|150399835|ref|YP_001323602.1| radical SAM domain-containing protein [Methanococcus vannielii SB]
 gi|150012538|gb|ABR54990.1| Radical SAM domain protein [Methanococcus vannielii SB]
          Length = 242

 Score = 85.8 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 89/255 (34%), Gaps = 67/255 (26%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I+E+F ++ GEG   G+  +F RF  C L            C +CD        T  G  
Sbjct: 2   IREVFSSIMGEGKFIGKRFIFVRFKQCPL-----------DCIYCD-----EPNTPEGMA 45

Query: 66  NVDQLA-------------DLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKR 110
            V+++              +LI+        +      TGGEPLL  Q      + L+ +
Sbjct: 46  RVEEIPGSGLFTEYLDIDNELIQIIENLRTPDLFAVSFTGGEPLLYSQKIKEYSKILHDK 105

Query: 111 GFEIAVETNGTIE-PPQGIDWICVSPKAGCDLK---IKGGQEL----------------- 149
           G++  +E+NG         D+  +  K     K   ++   EL                 
Sbjct: 106 GYKTFLESNGMFPEKLSSYDYASIDIKLPEHFKDCDMEFWHELYRKELETIERLYYAKCN 165

Query: 150 ----KLVFPQVNVSPENYIGFDFERF-----SLQP------MDGPFLEENTNLAISYCFQ 194
                +VF + +V     I  D  +      S+QP      +     ++     ++ C +
Sbjct: 166 VYAKIVVFEETSVELLEQIARDLSKIGDITLSIQPVTPTGDIIKTVSKKKIFEIMAICGR 225

Query: 195 NPKWRLSVQTHKFIG 209
                 + Q HK++G
Sbjct: 226 YVDVICTPQIHKWMG 240


>gi|167043382|gb|ABZ08085.1| putative Radical SAM superfamily protein [uncultured marine
           crenarchaeote HF4000_ANIW141O9]
          Length = 237

 Score = 85.5 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 18/120 (15%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK   I EIF +++GEG   G   +F R +GC              C +CDT    +   
Sbjct: 1   MKT-RIFEIFTSIEGEGILYGTKTLFVRLAGCPY-----------SCFYCDTLDA-LPLD 47

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
            G  Y++ +  +LI+        +      TGGEPL+Q +    L + +  RG    +E+
Sbjct: 48  SGKEYSITEACNLIDTSLQDNTYK---VNFTGGEPLIQYEAVYELAKHVKARGLPTYLES 104


>gi|254361906|ref|ZP_04978039.1| hypothetical protein MHA_1513 [Mannheimia haemolytica PHL213]
 gi|153093447|gb|EDN74435.1| hypothetical protein MHA_1513 [Mannheimia haemolytica PHL213]
          Length = 55

 Score = 83.9 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 11/57 (19%)

Query: 4  YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
          + I EIF +LQGEG + G  A+F RF  CNL            C +CDT++   +  
Sbjct: 10 FPIVEIFESLQGEGFNTGMPAIFVRFGKCNLT-----------CPWCDTNYNQFEQW 55


>gi|205356588|ref|ZP_03223351.1| hypothetical protein Cj8421_0161 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205345593|gb|EDZ32233.1| hypothetical protein Cj8421_0161 [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 224

 Score = 83.5 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 69/176 (39%), Gaps = 19/176 (10%)

Query: 27  CRFSGCNLWSGREQDRLSAQCR---FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            RF+GCN        ++S   +    CDT            Y      +L++      + 
Sbjct: 1   MRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKLKQD 60

Query: 84  EGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNGTIE------PPQGIDWICV 133
                V+TGGEPL+  + P     IQ L K  FEI  E+NG+IE      P        +
Sbjct: 61  FDPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFESNGSIEIDFDRYPFYKECIFAL 120

Query: 134 SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP--MDGPFLEENTNL 187
           S K        G ++ K +  +   + +NY    F +F L    +D  FLE N  L
Sbjct: 121 SVKLQNS----GIKKDKRLNFKALKAFKNYAKDSFYKFVLDANTLDNSFLEINEIL 172


>gi|330721755|gb|EGG99747.1| Queuosine Biosynthesis QueE Radical SAM [gamma proteobacterium
           IMCC2047]
          Length = 164

 Score = 82.4 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 37/169 (21%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
            ++D +   ++      +   R+  +TGGEPL Q   + L+  L  R +++++ET+G + 
Sbjct: 1   MSLDAILGEVD------KYASRHVTVTGGEPLAQPKVLKLLAELCDRDYQVSLETSGAVT 54

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQE-----------------LKLVFPQVNVSPENYIGF 166
             +G+D   V      DLK    QE                 +K V    +    ++   
Sbjct: 55  L-EGVDQRVV---KVMDLKTPASQECHRNLYENIDLLNTHDQVKFVIC--DRQDYDWAKM 108

Query: 167 DFERFSL-----QPMDGPFLEENT--NLAISYCFQNPKWRLSVQTHKFI 208
             +++SL     + +  P   E T   LA        + R  +Q HK++
Sbjct: 109 QIDQYSLTERVDEVLFSPSHGELTGAQLAEWILDDGLQVRFQLQLHKYL 157


>gi|294337988|emb|CBJ93826.1| hypothetical phage protein [Campylobacter phage CP220]
 gi|294338182|emb|CBJ94219.1| hypothetical phage protein [Campylobacter phage CPt10]
          Length = 264

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 76/228 (33%), Gaps = 45/228 (19%)

Query: 12  TLQGEGGHAGRVAVFCRFSGCNLWSGRE----QDRLSAQCRFCDTDFVGIQGTKGGRY-- 65
           T+QGEG    + AVF R +GCN               +    CDT        K      
Sbjct: 19  TIQGEGPRL-KSAVFVRVAGCNNTCKGFGCSAVAPDGSAVTGCDTIRAVSPKFKSQWKYF 77

Query: 66  ----NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK----RGFEIAVE 117
               ++  + D +     +  K  +  +LTGGEPLL  +  +IQ        R  +I +E
Sbjct: 78  DNFKDLTSIIDPLVAFKNSEIKHTKDIILTGGEPLLYWNTNVIQDFLAYYISRKHQITIE 137

Query: 118 TNGTIEPPQGIDW-----ICVSPKAGCD-------LKIKGGQE---------LKLVF--- 153
           TN +++     ++       +S K  C        + IK   +         LK V    
Sbjct: 138 TNASLDIEFFKEYQKEIMFSMSVKLSCSGEPKKKRINIKTISKILENCPKSYLKFVVNPE 197

Query: 154 ----PQVNVSPENYIGFDFERFSLQPM--DGPFLEENTNLAISYCFQN 195
                   +    Y    +    L PM        +NT      C ++
Sbjct: 198 TWDTDYAEIKEILYDLPIYTEVYLMPMGETRELQIKNTPFVFEKCAEH 245


>gi|297619956|ref|YP_003708061.1| Radical SAM domain protein [Methanococcus voltae A3]
 gi|297378933|gb|ADI37088.1| Radical SAM domain protein [Methanococcus voltae A3]
          Length = 247

 Score = 78.9 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 82/257 (31%), Gaps = 66/257 (25%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I+E+F ++ GEG + G+  +F RF  C L            C +CD         K    
Sbjct: 2   IREVFSSIMGEGKYIGKRFIFVRFKKCPL-----------NCIYCDEPNTAEGIPKVEYI 50

Query: 66  NVDQLAD--------LIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA--LNKRGFEIA 115
           +   +          LIE        +      TGGEPL+        A  L ++G++  
Sbjct: 51  SGSDVIKEVPDLQNCLIETIDELKTPDLFAISFTGGEPLVYSKYIETYAPKLREKGYKTF 110

Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKG---------------GQELKL--------- 151
           +E+NG    P+ +        A  D+K+                  +ELK          
Sbjct: 111 LESNG--MFPEAVKDAKYYDYASIDIKLPEHFDNVNKVIEWEDLYKKELKTIENLYKNGT 168

Query: 152 -----VFPQVNVSPENYIGFDFE-------RFSLQPMDG-------PFLEENTNLAISYC 192
                V    N S E       +          +QP+         P  ++     +  C
Sbjct: 169 EVYAKVVIFENTSNELIEKIAKDISNIGNITLCIQPITPIKGLDIKPPAQKKIFKIMELC 228

Query: 193 FQNPKWRLSVQTHKFIG 209
            +      + Q HK++ 
Sbjct: 229 GKYTDVMFTPQIHKWMN 245


>gi|218457967|ref|ZP_03498058.1| organic-radical-activating protein [Rhizobium etli Kim 5]
          Length = 184

 Score = 78.1 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 56/174 (32%), Gaps = 36/174 (20%)

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE--PP 125
                + +E             L+GG P +Q   PLI+  + +G+  A+ET G++     
Sbjct: 1   MSAEAIWQEVTKLSGGRPMTVSLSGGNPAIQPLGPLIELGHSQGYRFALETQGSVARNWF 60

Query: 126 QGIDWICVSPKAGCDLKIKGGQEL----------------KLVFPQVNVSPENYIGFDFE 169
           + +D + +SPK           EL                 +VF   + +    +G  + 
Sbjct: 61  RDLDVLVLSPKPPSSGMSTNWGELGNCLRLTAGGPEIALKIVVFDDADYAFARQVGERYP 120

Query: 170 RF--SLQPMDGPFLEENTNLA---ISYCFQNPKW-------------RLSVQTH 205
                LQP +      + + A   I        W             R+  Q H
Sbjct: 121 YIPLYLQPGNHTPPPPDDDDARIDIDGVMDRMHWLVEKVTVDGWFAPRVLPQLH 174


>gi|161527549|ref|YP_001581375.1| radical SAM domain-containing protein [Nitrosopumilus maritimus
           SCM1]
 gi|160338850|gb|ABX11937.1| Radical SAM domain protein [Nitrosopumilus maritimus SCM1]
          Length = 237

 Score = 78.1 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 84/245 (34%), Gaps = 59/245 (24%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           EIF +++GEG   G   +F R +GC              C +CDT    +    G  Y++
Sbjct: 7   EIFTSVEGEGILYGTKTLFVRLAGCPFT-----------CFYCDTK-ESLPLDSGTEYSI 54

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
           +    LI+        +      TGG+PL+Q      L + + ++     +E++   +  
Sbjct: 55  EDANQLIDSNLKNQTYK---VNFTGGDPLIQHQAVALLAKHIQEKKIPTYLESS-CFDID 110

Query: 126 ------QGIDWI------------------------------CVSPKAGCDLKIKGGQEL 149
                   ID +                               VS K    +K+    + 
Sbjct: 111 RFNHVLPFIDIVKIEFKTKDSDFVDSQHYEKLIGHTMKCLESSVSAKKITYIKVVVSSKT 170

Query: 150 K-LVFPQ-VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW---RLSVQT 204
           K   F Q VN   +     D + F +QP  G        L   Y    P +   ++  Q 
Sbjct: 171 KPDDFTQLVNQIFDIVSKDDIDGFIIQPTYGVAEPSLDLLLSLYDIVFPHYNEVKVVPQL 230

Query: 205 HKFIG 209
           HKFIG
Sbjct: 231 HKFIG 235


>gi|284122655|ref|ZP_06386869.1| radical SAM domain protein [Candidatus Poribacteria sp. WGA-A3]
 gi|283829337|gb|EFC33735.1| radical SAM domain protein [Candidatus Poribacteria sp. WGA-A3]
          Length = 164

 Score = 77.8 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 62/172 (36%), Gaps = 44/172 (25%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
            +++ + D ++              +TGGEPL Q     LI  L +  FE+ +ET+G   
Sbjct: 1   MSLEAVVDQVK------GYGCSLVEVTGGEPLAQPAAFELITRLCEERFEVLIETSGA-- 52

Query: 124 PPQGIDWICVSPKAGCDL-------------------KIKGGQELKLVFPQVNVSPENYI 164
               ID   V P+A   L                    I+   ++K V    +    ++ 
Sbjct: 53  ----IDVAPVDPRASIILDVKCPGSEMDDRMRWENLQAIRQKDQVKFVI--GDRCDYDWA 106

Query: 165 GFDFERFSL--------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
               +R+ L         P+ G   +E   LA          RL VQ HKFI
Sbjct: 107 VEVVKRYRLTEKCPVLFSPVFG--AQELQPLAEWLLQDRLPVRLQVQLHKFI 156


>gi|45357640|ref|NP_987197.1| radical SAM domain-containing protein [Methanococcus maripaludis
           S2]
 gi|45047200|emb|CAF29633.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 242

 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 61/161 (37%), Gaps = 38/161 (23%)

Query: 6   IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           I+E+F ++ GEG   G+  +F RF  C L            C +CD          GG  
Sbjct: 2   IREVFSSIMGEGKFIGKRFIFVRFKECPL-----------DCIYCD-----EPNAPGGTA 45

Query: 66  NVDQLA---DLIE----------EQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKR 110
            V++++   + +E                  +      TGGEPL+  +      + L  +
Sbjct: 46  RVEEISGSCEFMEYLEIEHELIEIIEKLRTPDLFAVSFTGGEPLVYSNKIKEYSEILKHK 105

Query: 111 GFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIKGGQELK 150
           G++  +E+NG         D+      A  D+K+    E K
Sbjct: 106 GYKTFLESNGMFPERLGSYDY------ASIDIKLPEHFENK 140


>gi|329766234|ref|ZP_08257792.1| radical SAM domain-containing protein [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329137293|gb|EGG41571.1| radical SAM domain-containing protein [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 237

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 17/114 (14%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           EIF +++GEG   G   +F R +GC              C +CDT    +    G  Y++
Sbjct: 7   EIFTSVEGEGILYGTKTLFVRLAGCPFT-----------CFYCDTK-ESLPLDSGQEYSI 54

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
           ++   LI+        +      TGG+PL+Q +    L + +  +     +E++
Sbjct: 55  EEACTLIDSNLKNQTYK---VNFTGGDPLIQHEAVAELAKHIQTKKIPTYLESS 105


>gi|213418906|ref|ZP_03351972.1| hypothetical protein Salmonentericaenterica_14054 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 76

 Score = 75.1 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 9/75 (12%)

Query: 142 KIKGGQELKL------VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
            ++   E+K           ++              +LQP+     E+ T L I  C   
Sbjct: 4   ALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR 61

Query: 196 PKWRLSVQTHKFIGI 210
             WRLS+QTHK++ I
Sbjct: 62  -NWRLSMQTHKYLNI 75


>gi|257459146|ref|ZP_05624265.1| radical SAM domain protein [Campylobacter gracilis RM3268]
 gi|257443531|gb|EEV18655.1| radical SAM domain protein [Campylobacter gracilis RM3268]
          Length = 321

 Score = 74.3 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 5  SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSG-----REQDRLSAQCRFCDTDFVGI-- 57
           + E FL++QGEG +AGR+A F RF+GCNL        R   +     R CDT       
Sbjct: 2  RLVESFLSIQGEGKYAGRLAFFFRFAGCNLRCAGFGGERVSPKTGEILRGCDTIRAVFTN 61

Query: 58 QGTKGGRYNVDQLADLIE 75
                  N+ QL + I 
Sbjct: 62 HFEHEEILNLAQLLNKIS 79



 Score = 69.3 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 47/152 (30%), Gaps = 31/152 (20%)

Query: 75  EEQWITGEKEGRYCVLTGGEPLLQVDVPL----IQALNKRGFEIAVETNGTI------EP 124
                    +    ++TGGEP+L     L    I  L  RG+E+  ETNGTI       P
Sbjct: 151 ASPQSAKLHQKPIIIITGGEPMLHHKEALFYEFICELLARGYEVHFETNGTILVDFEKFP 210

Query: 125 PQGIDWICVSPKAGCD---------------LKIKGGQEL-KLVF-PQVNVSPENYIGFD 167
                   VSPK                   LK        K V  P+ +  PE      
Sbjct: 211 AYKSSVFAVSPKLSNSAEPRERRLNFAALRNLKQNAKDSFYKFVISPEFDAQPEIREILA 270

Query: 168 F--ERFSLQP--MDGPFLEENTNLAISYCFQN 195
                    P   D   LE      + +C +N
Sbjct: 271 ACESEVYCMPRGADRRELESGAQFCVDFCLKN 302


>gi|213585771|ref|ZP_03367597.1| hypothetical protein SentesTyph_32677 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 58

 Score = 71.2 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 169 ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
              +LQP+     E+ T L I  C     WRLS+QTHK++ I
Sbjct: 19  RVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 57


>gi|313158374|gb|EFR57773.1| pyruvate formate-lyase 1-activating enzyme [Alistipes sp. HGB5]
          Length = 241

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 26/118 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GCN            +C +C   DT    I    G   + D++
Sbjct: 11  GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IDACGGTPTSPDEI 53

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQ 126
             +  +Q     + G     +GGEP  Q     PL++ L + G  + ++TNG+I  P 
Sbjct: 54  LRMAVDQKPFYGRRGG-VTFSGGEPTFQAAALAPLVRRLREAGIHVCIDTNGSIWNPA 110


>gi|257052674|ref|YP_003130507.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Halorhabdus utahensis DSM 12940]
 gi|256691437|gb|ACV11774.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Halorhabdus utahensis DSM 12940]
          Length = 228

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 36/139 (25%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIE 75
           AVF   +GCNL           +C +C        D+   G         + D+   L++
Sbjct: 21  AVF--TAGCNL-----------RCPYCHNPELIEADSKHAG-----ASTLSADEFFALLD 62

Query: 76  EQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPP--QGIDWIC 132
           ++    +      V+TGGEP L  D+P  +  +  RGF++ ++TNGT      + +D   
Sbjct: 63  DREAVLDG----VVITGGEPTLHRDLPRFVSRIADRGFDVKLDTNGTRPAVLRETLDTGA 118

Query: 133 VSPKAGCDLKIK--GGQEL 149
           V      DLK       EL
Sbjct: 119 VE-YVAMDLKTTPDRYDEL 136


>gi|325297399|ref|YP_004257316.1| pyruvate formate-lyase activating enzyme [Bacteroides salanitronis
           DSM 18170]
 gi|324316952|gb|ADY34843.1| pyruvate formate-lyase activating enzyme [Bacteroides salanitronis
           DSM 18170]
          Length = 242

 Score = 68.5 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 32/182 (17%)

Query: 3   LYSIKEIFLTLQGEGGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVG 56
           +  +   + +L   G + G   R+ VF    GCN            +C +C   DT  + 
Sbjct: 1   MIRVH-SYESL---GTYDGPGIRLVVF--LQGCNF-----------RCLYCANPDT--ID 41

Query: 57  IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEI 114
            +G        D L   + ++   G+K G     +GGEP +Q    +PL + L + G  I
Sbjct: 42  CKGEGKNTAPEDILRMAVSQKPFFGKKGG--ITFSGGEPTIQAKALIPLFRMLKEAGIHI 99

Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKI---KGGQELKLVFPQVNVSPENYIGFDFERF 171
            V+TNG++      D   ++     D+K    +    L L   +  +    ++  + + F
Sbjct: 100 CVDTNGSVWNESVKDLFTLADLVLLDVKEFNDERHHLLTLRSNEQTLQTAAWLEANEKPF 159

Query: 172 SL 173
            L
Sbjct: 160 WL 161


>gi|218778532|ref|YP_002429850.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218759916|gb|ACL02382.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 236

 Score = 68.1 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 15/110 (13%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
             V    + CNL           +C +C+   + +        + ++L D + +      
Sbjct: 23  PCVNVYLAFCNL-----------RCPWCNAAELVVGPQTKETISPEELFDEL-QTIKNKH 70

Query: 83  KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI 131
            E +    TGGEP +   +P L++ +   G E  VETNGT   P  +D++
Sbjct: 71  PELKAVCFTGGEPTMHRGLPDLLRRVCDMGLETCVETNGT--QPHLLDYV 118


>gi|320540673|ref|ZP_08040308.1| putative conserved protein [Serratia symbiotica str. Tucson]
 gi|320029264|gb|EFW11308.1| putative conserved protein [Serratia symbiotica str. Tucson]
          Length = 54

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
           ++              +LQP+     E+ T L I+ C     WRLS+QTHK++ I
Sbjct: 2   LDALLATLHDKKPRIIALQPISKK--EDATRLCITTCIAR-NWRLSMQTHKYLNI 53


>gi|289450755|ref|YP_003475206.1| pyruvate formate-lyase 1-activating enzyme [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289185302|gb|ADC91727.1| pyruvate formate-lyase 1-activating enzyme [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 503

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 22/105 (20%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           G   +F    GC L           +C FC   DT       T G     +++    +  
Sbjct: 22  GVRTIFF-LQGCPL-----------RCSFCHNPDTQAT----TGGTLMTPEEVLAKAKRY 65

Query: 78  WITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
                ++G     +GGEPLLQ       ++ L+  GF   ++T+G
Sbjct: 66  RPYHREDGG-VTFSGGEPLLQGEFLAATLKLLHDNGFNTCLDTSG 109


>gi|189025041|ref|YP_001935809.1| Proline-rich extensin [Brucella abortus S19]
 gi|189020613|gb|ACD73335.1| Proline-rich extensin [Brucella abortus S19]
          Length = 184

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 2/101 (1%)

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI--EPP 125
             +  +  E     +K      L+GG P +Q    LI+     G+  A+ET G++  +  
Sbjct: 1   MSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVAKDWF 60

Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
             +D + +SPK            L          P   + F
Sbjct: 61  SRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 101


>gi|169825191|ref|YP_001692802.1| pyruvate-formate-lyase-activating enzyme [Finegoldia magna ATCC
           29328]
 gi|167831996|dbj|BAG08912.1| pyruvate-formate-lyase-activating enzyme [Finegoldia magna ATCC
           29328]
          Length = 501

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 28/128 (21%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           G   +F    GC L           +C +C   D+  +      G  Y VD++  +    
Sbjct: 22  GNRTIFF-LQGCPL-----------KCVYCHNPDSQNIH----GGKEYTVDEIIKIARRY 65

Query: 78  WITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGT------IEPPQGID 129
                +EG    ++GGEPLLQ +    L++ L + GF   ++T+G        E    ID
Sbjct: 66  KPYHGQEGG-VTISGGEPLLQGEFLKELVKRLKQEGFNTCLDTSGVGDKKYYSEILPYID 124

Query: 130 WICVSPKA 137
            I +  KA
Sbjct: 125 TILLDFKA 132


>gi|325290498|ref|YP_004266679.1| pyruvate formate-lyase activating enzyme [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965899|gb|ADY56678.1| pyruvate formate-lyase activating enzyme [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 248

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 24/118 (20%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
            E F TL G G    R  VF    GC L           +C++C          +    N
Sbjct: 8   VESFSTLDGPGI---RSVVF--LQGCPL-----------RCQYC----HNPDTWQMNEGN 47

Query: 67  VDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
           +   A++I           R     ++GGEP  Q+D    L++   + G   AV+T+G
Sbjct: 48  LVDSAEVIARVLKNKNYIARNGGVTISGGEPTAQIDFLAELLKGFKEAGLHTAVDTSG 105


>gi|225568673|ref|ZP_03777698.1| hypothetical protein CLOHYLEM_04751 [Clostridium hylemonae DSM
           15053]
 gi|225162515|gb|EEG75134.1| hypothetical protein CLOHYLEM_04751 [Clostridium hylemonae DSM
           15053]
          Length = 226

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 24/101 (23%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC L           +C +C   DT     +   G  ++  ++A  I       
Sbjct: 13  VFM--QGCPL-----------RCAYCHNPDT----WKFEAGEEFSPQEVAGKIRRYRPYL 55

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
              G    +TGGEPL+Q +    L + L + GF  A++T+G
Sbjct: 56  TNGG--VTVTGGEPLMQPEFTAELFRILKEEGFHTALDTSG 94


>gi|302380412|ref|ZP_07268880.1| pyruvate formate-lyase 1-activating enzyme [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311723|gb|EFK93736.1| pyruvate formate-lyase 1-activating enzyme [Finegoldia magna
           ACS-171-V-Col3]
          Length = 501

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 22/105 (20%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           G   +F    GC L           +C +C   D+  +      G  Y VD++  + +  
Sbjct: 22  GNRTIFF-LQGCPL-----------KCVYCHNPDSQNIH----GGKEYTVDEIIKIAKRY 65

Query: 78  WITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +EG    ++GGEPLLQ +    L++ L + GF   ++T+G
Sbjct: 66  KPYHGQEGG-VTISGGEPLLQGEFLKELVKRLKQEGFNTCLDTSG 109


>gi|303234602|ref|ZP_07321236.1| pyruvate formate-lyase 1-activating enzyme [Finegoldia magna
           BVS033A4]
 gi|302494265|gb|EFL54037.1| pyruvate formate-lyase 1-activating enzyme [Finegoldia magna
           BVS033A4]
          Length = 501

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 22/105 (20%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           G   +F    GC L           +C +C   D+  +      G  Y VD++  + +  
Sbjct: 22  GNRTIFF-LQGCPL-----------KCVYCHNPDSQNIH----GGKEYTVDEIIKIAKRY 65

Query: 78  WITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +EG    ++GGEPLLQ +    L++ L + GF   ++T+G
Sbjct: 66  KPYHGQEGG-VTISGGEPLLQGEFLKELVKRLKQEGFNTCLDTSG 109


>gi|227494256|ref|ZP_03924572.1| [formate-C-acetyltransferase]-activating enzyme [Actinomyces
           coleocanis DSM 15436]
 gi|226831990|gb|EEH64373.1| [formate-C-acetyltransferase]-activating enzyme [Actinomyces
           coleocanis DSM 15436]
          Length = 296

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 26/128 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
            +GC L           +C +C   DT    ++   G     D+L   +E      +   
Sbjct: 80  LAGCPL-----------RCLYCHNPDT----MKMRDGTAVYADELIKRMERYAPVFKASN 124

Query: 86  RYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG------TIEPPQGIDWICVSPKA 137
                +GGEPL+Q    + L++A  +RG   A++T+G      + E  + +D + +  K+
Sbjct: 125 GGVTFSGGEPLMQPAFLLKLLKAAKERGIHTAIDTSGFLGAHASDELLENVDLVLLDVKS 184

Query: 138 GCDLKIKG 145
           G     + 
Sbjct: 185 GLPDVYEK 192


>gi|168335509|ref|ZP_02693590.1| pyruvate formate-lyase activating enzyme [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 243

 Score = 65.4 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 35/174 (20%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC L           +C++C   DT     +G+ G   + D L   I +     
Sbjct: 23  IF--TQGCPL-----------RCQYCHNPDT----WKGSDGEEMDSDALVKEILKYKAYM 65

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139
           ++      ++GGEPLLQ +    + + + K+G    ++T+G I   +  D +  +     
Sbjct: 66  DRSNGGITISGGEPLLQREFVTDIFKKVKKKGIHTCIDTSGFIPLDKIGDILDYTDLVLL 125

Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
           D+K       K V     V+ E  + F              ++ N  + I Y  
Sbjct: 126 DIKSYNPAIYKKV---TGVALEPTLKFA----------QELMKRNIPVWIRYVL 166


>gi|327400235|ref|YP_004341074.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Archaeoglobus veneficus SNP6]
 gi|327315743|gb|AEA46359.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Archaeoglobus veneficus SNP6]
          Length = 232

 Score = 65.4 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 26/122 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +F   SGC             +C FC           G + +V  L   I E ++     
Sbjct: 22  IF--LSGCPF-----------RCPFC---HNHELLAGGTKTDVSGLIGKISENYLIDG-- 63

Query: 85  GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG--TIEPPQGIDWICVSPKAGCDLK 142
                +TGGEPL+Q    L + L   GF + ++TNG  T E  + +D++        DLK
Sbjct: 64  ---VCITGGEPLMQNIEDLCKKLKDAGFAVKIDTNGYYTEELGKILDYV---DYVAIDLK 117

Query: 143 IK 144
             
Sbjct: 118 TT 119


>gi|330836098|ref|YP_004410739.1| glycyl-radical enzyme activating protein family [Spirochaeta
           coccoides DSM 17374]
 gi|329748001|gb|AEC01357.1| glycyl-radical enzyme activating protein family [Spirochaeta
           coccoides DSM 17374]
          Length = 252

 Score = 65.0 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 23/107 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADL 73
           R  +F  F GCNL           +C +C               +   G  + ++++   
Sbjct: 20  RSTIF--FKGCNL-----------RCHWCANPESISMKVRPELEESLGGRIWKLEEVLHD 66

Query: 74  IEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           + +  +  ++ G    L+GGEPLLQ D    L  AL+  G  +A+ET
Sbjct: 67  VLKDKVFYDESGGGVTLSGGEPLLQADFACALCDALHAHGVAVAIET 113


>gi|226328669|ref|ZP_03804187.1| hypothetical protein PROPEN_02564 [Proteus penneri ATCC 35198]
 gi|225203402|gb|EEG85756.1| hypothetical protein PROPEN_02564 [Proteus penneri ATCC 35198]
          Length = 53

 Score = 65.0 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 168 FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
               +LQP+     E  T L I  C +   WR S+QTHK++ I
Sbjct: 13  APVVALQPISCK--ESATALCIKTCIER-NWRFSMQTHKYLNI 52


>gi|313673576|ref|YP_004051687.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940332|gb|ADR19524.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 230

 Score = 65.0 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 41/154 (26%)

Query: 1   MKLYSIKEIFLTLQGEGG----HAGRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDF 54
           M    + EI      E        G+VA  VF    GCNL           +CR+C    
Sbjct: 1   MWTLPVSEI------ETVSLTNFTGKVACTVF--TIGCNL-----------RCRYCYNKS 41

Query: 55  VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFE 113
           + ++  K    +++++ D I+          +   +TGGEPLL   +   +  L   GFE
Sbjct: 42  LVLKTEKP--VDIEKIRDKIKTL------PLKNIAITGGEPLLHYSLKDFLYFLKDSGFE 93

Query: 114 IAVETNGTIE-------PPQGIDWICVSPKAGCD 140
           I ++TNGT           + ID++ V  KA  D
Sbjct: 94  IKLDTNGTFPERLQNILDKKLIDYVAVDIKAFTD 127


>gi|302874687|ref|YP_003843320.1| pyruvate formate-lyase activating enzyme [Clostridium cellulovorans
           743B]
 gi|302577544|gb|ADL51556.1| pyruvate formate-lyase activating enzyme [Clostridium cellulovorans
           743B]
          Length = 240

 Score = 64.7 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 42/102 (41%), Gaps = 24/102 (23%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GCNL           +C +C   DT         G  Y  +QL   I       
Sbjct: 24  VF--LQGCNL-----------RCLYCHNPDT----WACNGGTEYTPEQLLKKIVRFKPYF 66

Query: 82  EKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETNG 120
           EK G     +GGEPLLQ +  LI+AL    + G   A++T G
Sbjct: 67  EKSGGGVTFSGGEPLLQYNF-LIEALKLCKENGIHTAIDTAG 107


>gi|297587883|ref|ZP_06946527.1| pyruvate formate-lyase activating enzyme [Finegoldia magna ATCC
           53516]
 gi|297574572|gb|EFH93292.1| pyruvate formate-lyase activating enzyme [Finegoldia magna ATCC
           53516]
          Length = 501

 Score = 64.7 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 22/105 (20%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           G   +F    GC L           +C +C   D+  +      G  Y VD++  + +  
Sbjct: 22  GNRTIFF-LQGCPL-----------KCVYCHNPDSQNIH----GGKEYAVDEIIKIAKRY 65

Query: 78  WITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +EG    ++GGEPLLQ +    L++ L + GF   ++T+G
Sbjct: 66  KPYHGQEGG-VTISGGEPLLQGEFLKELVKRLKQEGFNTCLDTSG 109


>gi|307690701|ref|ZP_07633147.1| pyruvate formate-lyase activating enzyme [Clostridium cellulovorans
           743B]
          Length = 229

 Score = 64.7 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 42/102 (41%), Gaps = 24/102 (23%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GCNL           +C +C   DT         G  Y  +QL   I       
Sbjct: 13  VF--LQGCNL-----------RCLYCHNPDT----WACNGGTEYTPEQLLKKIVRFKPYF 55

Query: 82  EKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETNG 120
           EK G     +GGEPLLQ +  LI+AL    + G   A++T G
Sbjct: 56  EKSGGGVTFSGGEPLLQYNF-LIEALKLCKENGIHTAIDTAG 96


>gi|78778108|ref|YP_394423.1| hypothetical protein Suden_1914 [Sulfurimonas denitrificans DSM
           1251]
 gi|78498648|gb|ABB45188.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 221

 Score = 64.7 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 10/99 (10%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           GC      E      +   CDT +    +        +    +L+              V
Sbjct: 7   GC-----EESTPNGEKIVGCDTIYAVNREHFLQNWIPITSAHELLNILNFYDLPFAVDVV 61

Query: 90  LTGGEPLLQVDVP----LIQALNKRGFEIAVETNGTIEP 124
           LTGGEPL+  + P     ++ L +RG +I  ETNGT+  
Sbjct: 62  LTGGEPLIYANEPIFIEFLEKLYERGHKITFETNGTLSV 100


>gi|265750428|ref|ZP_06086491.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp.
           3_1_33FAA]
 gi|263237324|gb|EEZ22774.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp.
           3_1_33FAA]
          Length = 242

 Score = 64.7 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 25/115 (21%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GCN            +C +C   DT     + T+     +D++
Sbjct: 11  GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDTIDTKGESTET---TIDEI 54

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K+G     +GGEP LQ    +PL Q L ++   I ++TNG+I 
Sbjct: 55  VRMAVSQKAFFGKKGG-VTFSGGEPTLQAKALIPLFQRLKEQNIHICIDTNGSIW 108


>gi|237747112|ref|ZP_04577592.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
           HOxBLS]
 gi|229378463|gb|EEO28554.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
           HOxBLS]
          Length = 227

 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 30/139 (21%)

Query: 10  FLTLQGEGGHAGRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           F T+       GR+A  VFC   GC             +CR+C    +   G  GGRY  
Sbjct: 17  FTTID----FPGRLAAVVFC--QGCP-----------WRCRYCHNRHLLPTGE-GGRYLW 58

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE--- 123
             +   ++ +    E      V +GGEPLLQ  +P     L+++GFE+A+ T+G      
Sbjct: 59  QDVLAWLKTRQGLLEG----VVFSGGEPLLQKQLPEAADQLHRQGFEVALHTSGVYPERL 114

Query: 124 --PPQGIDWICVSPKAGCD 140
                 I+W+ +  KA  D
Sbjct: 115 AKVLPLIEWVGLDIKAPFD 133


>gi|315503285|ref|YP_004082172.1| pyruvate formate-lyase activating enzyme [Micromonospora sp. L5]
 gi|315409904|gb|ADU08021.1| pyruvate formate-lyase activating enzyme [Micromonospora sp. L5]
          Length = 261

 Score = 64.3 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 29/133 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF   +GC L           +CR+C   DT +    G  G R  VD++  L        
Sbjct: 41  VF--LAGCPL-----------RCRYCHSPDTWY----GRSGRRRTVDEMVTLATRYRRFI 83

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALN-KRGFEIAVETNGTI------EPPQGIDWIC 132
           +  G    ++GGEPLLQ      L++  +   G   A++T+G +            D + 
Sbjct: 84  QVAGGGVTVSGGEPLLQPAFTRELLRRCHDDLGLHTALDTSGFLGVRADDALLDATDLVL 143

Query: 133 VSPKAGCDLKIKG 145
           +  KAG     + 
Sbjct: 144 LDVKAGNPQTYRR 156


>gi|302866870|ref|YP_003835507.1| pyruvate formate-lyase activating enzyme [Micromonospora aurantiaca
           ATCC 27029]
 gi|302569729|gb|ADL45931.1| pyruvate formate-lyase activating enzyme [Micromonospora aurantiaca
           ATCC 27029]
          Length = 275

 Score = 64.3 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 29/133 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF   +GC L           +CR+C   DT +    G  G R  VD++  L        
Sbjct: 55  VF--LAGCPL-----------RCRYCHSPDTWY----GRSGRRRTVDEMVTLATRYRRFI 97

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALN-KRGFEIAVETNGTI------EPPQGIDWIC 132
           +  G    ++GGEPLLQ      L++  +   G   A++T+G +            D + 
Sbjct: 98  QVAGGGVTVSGGEPLLQPAFTRELLRRCHDDLGLHTALDTSGFLGVRADDALLDATDLVL 157

Query: 133 VSPKAGCDLKIKG 145
           +  KAG     + 
Sbjct: 158 LDVKAGNPQTYRR 170


>gi|319643534|ref|ZP_07998157.1| pyruvate formate-lyase 1 activating enzyme [Bacteroides sp.
           3_1_40A]
 gi|317384939|gb|EFV65895.1| pyruvate formate-lyase 1 activating enzyme [Bacteroides sp.
           3_1_40A]
          Length = 242

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 25/115 (21%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GCN            +C +C   DT  +  +G        + +
Sbjct: 11  GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT--IDTKGESTETAIDEIV 55

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
              + ++   G+K G     +GGEP LQ    +PL Q L ++   I ++TNG+I 
Sbjct: 56  HMAVSQKAFFGKKGG--VTFSGGEPTLQAKALIPLFQRLKEQNIHICIDTNGSIW 108


>gi|254883806|ref|ZP_05256516.1| pyruvate formate-lyase activating enzyme [Bacteroides sp.
           4_3_47FAA]
 gi|254836599|gb|EET16908.1| pyruvate formate-lyase activating enzyme [Bacteroides sp.
           4_3_47FAA]
          Length = 240

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 25/115 (21%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GCN            +C +C   DT  +  +G        + +
Sbjct: 11  GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT--IDTKGESTETAIDEIV 55

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
              + ++   G+K G     +GGEP LQ    +PL Q L ++   I ++TNG+I 
Sbjct: 56  HMAVSQKAFFGKKGG--VTFSGGEPTLQAKALIPLFQRLKEQNIHICIDTNGSIW 108


>gi|150005399|ref|YP_001300143.1| putative pyruvate formate-lyase 1 activating enzyme [Bacteroides
           vulgatus ATCC 8482]
 gi|294777180|ref|ZP_06742637.1| putative pyruvate formate-lyase 1-activating enzyme [Bacteroides
           vulgatus PC510]
 gi|149933823|gb|ABR40521.1| putative pyruvate formate-lyase 1 activating enzyme [Bacteroides
           vulgatus ATCC 8482]
 gi|294449049|gb|EFG17592.1| putative pyruvate formate-lyase 1-activating enzyme [Bacteroides
           vulgatus PC510]
          Length = 242

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 25/115 (21%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GCN            +C +C   DT  +  +G        + +
Sbjct: 11  GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT--IDTKGESTETAIDEIV 55

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
              + ++   G+K G     +GGEP LQ    +PL Q L ++   I ++TNG+I 
Sbjct: 56  RMAVSQKAFFGKKGG--VTFSGGEPTLQAKALIPLFQRLKEQNIHICIDTNGSIW 108


>gi|51243917|ref|YP_063801.1| pyruvate formate-lyase activating enzyme [Desulfotalea psychrophila
           LSv54]
 gi|50874954|emb|CAG34794.1| related to pyruvate formate-lyase activating enzyme [Desulfotalea
           psychrophila LSv54]
          Length = 206

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 58/162 (35%), Gaps = 29/162 (17%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG--IQGTKGGRYNVDQLADLIEEQW 78
           G  A      GCN            +C FC     G  +         V+++   + E+ 
Sbjct: 16  GVPAAIIFTQGCNY-----------RCPFC---HNGNLLPMQGSEEIEVEEVLSWLRERQ 61

Query: 79  ITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG-------IDW 130
              +      V+TGGEP LQ D+   I  + + G++I +++NG+             ID+
Sbjct: 62  GKLDG----VVITGGEPTLQADLGSFICQIREMGYKIKLDSNGSHPEVLEKLLDQGLIDF 117

Query: 131 ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
           + +  KA    K      +K+    +  S E       E   
Sbjct: 118 VAMDVKAPAA-KYSRLCGVKVNLEHIEQSMEIIAKSGVEHLF 158


>gi|237727146|ref|ZP_04557627.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D4]
 gi|229434002|gb|EEO44079.1| pyruvate formate-lyase activating enzyme [Bacteroides dorei
           5_1_36/D4]
          Length = 242

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 25/115 (21%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GCN            +C +C   DT     + T+     +D++
Sbjct: 11  GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDTIDTKGESTET---TIDEI 54

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K+G     +GGEP LQ    +PL Q L ++   I ++TNG+I 
Sbjct: 55  VRMAVSQKAFFGKKGG-VTFSGGEPTLQAKALIPLFQRLKEQSIHICIDTNGSIW 108


>gi|154500609|ref|ZP_02038647.1| hypothetical protein BACCAP_04282 [Bacteroides capillosus ATCC
           29799]
 gi|150270498|gb|EDM97807.1| hypothetical protein BACCAP_04282 [Bacteroides capillosus ATCC
           29799]
          Length = 253

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 46/127 (36%), Gaps = 29/127 (22%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F T+ G G        VF  F GC +           +C +C   DT         G
Sbjct: 12  VESFGTVDGPGIRFV----VF--FQGCPM-----------RCLYCHNPDT----WGTEGG 50

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
               VD+L    +     G         TGGEPLLQ+     L  A  ++G    ++T+G
Sbjct: 51  TEMTVDELLAAYQRNK--GFYRQGGITATGGEPLLQLPFLTELFTAAKEQGIHTCLDTSG 108

Query: 121 TIEPPQG 127
            +  P  
Sbjct: 109 IVYRPDH 115


>gi|212694897|ref|ZP_03303025.1| hypothetical protein BACDOR_04431 [Bacteroides dorei DSM 17855]
 gi|212662575|gb|EEB23149.1| hypothetical protein BACDOR_04431 [Bacteroides dorei DSM 17855]
          Length = 233

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 25/115 (21%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GCN            +C +C   DT     + T+     +D++
Sbjct: 2   GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDTIDTKGESTET---TIDEI 45

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K+G     +GGEP LQ    +PL Q L ++   I ++TNG+I 
Sbjct: 46  VRMAVSQKAFFGKKGG-VTFSGGEPTLQAKALIPLFQRLKEQSIHICIDTNGSIW 99


>gi|225376505|ref|ZP_03753726.1| hypothetical protein ROSEINA2194_02147 [Roseburia inulinivorans DSM
           16841]
 gi|225211677|gb|EEG94031.1| hypothetical protein ROSEINA2194_02147 [Roseburia inulinivorans DSM
           16841]
          Length = 278

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 40/187 (21%)

Query: 8   EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F T+ G G        VF  F GC +           +C++C   DT     +   G 
Sbjct: 22  ETFGTVDGPGVRFV----VF--FQGCPM-----------RCQYCHNPDT----WKIEDGE 60

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
               D++ D  E        +      TGGEP+LQ+D    L     ++G    ++T+G 
Sbjct: 61  EMTADEIIDRFERNR--SFYQTGGITATGGEPMLQLDFLTELFTKAKEKGIHTCLDTSGI 118

Query: 122 IEPPQG----------IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
           + P +           I    +S     D +++  ++L  V   V +  ++    + ++ 
Sbjct: 119 MFPKKHTGTDQNSEREISLTGISENMASD-RMEKIEQLMSVTDLVMLDIKHINDEEHQKL 177

Query: 172 SLQPMDG 178
           + QP   
Sbjct: 178 TGQPNSN 184


>gi|260589643|ref|ZP_05855556.1| pyruvate formate-lyase 1-activating enzyme [Blautia hansenii DSM
           20583]
 gi|331083074|ref|ZP_08332191.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|260539883|gb|EEX20452.1| pyruvate formate-lyase 1-activating enzyme [Blautia hansenii DSM
           20583]
 gi|330405076|gb|EGG84613.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 250

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 27/118 (22%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
           E F T+ G G    R+ VF    GC +           +C +C   DT        KG  
Sbjct: 13  ETFGTVDGPGI---RLVVF--LQGCPM-----------RCLYCHNPDT----WAPKKGQS 52

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
             V+++ ++ E+    G  +     +TGGEPL+Q++    L QA   +     ++T+G
Sbjct: 53  MTVEEILEIYEKNK--GFYQNGGITVTGGEPLMQLEFVTALFQAAKSKNIHTCLDTSG 108


>gi|150389978|ref|YP_001320027.1| pyruvate formate-lyase activating enzyme [Alkaliphilus
           metalliredigens QYMF]
 gi|149949840|gb|ABR48368.1| pyruvate formate-lyase activating enzyme [Alkaliphilus
           metalliredigens QYMF]
          Length = 248

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 27/119 (22%)

Query: 8   EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F T+ G G  +     +F  F GC L           +C++C   DT         G 
Sbjct: 11  ETFGTVDGPGIRYI----IF--FQGCPL-----------RCKYCHNRDT----WDLQGGK 49

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
              VD++   I++        G    ++GGEP LQ+     L+  + K     A++T+G
Sbjct: 50  EMTVDEVISDIKKYIPFMVSSGGGVTISGGEPTLQMEFLTALLLEIKKLNLHTAIDTSG 108


>gi|320535961|ref|ZP_08036025.1| pyruvate formate-lyase 1-activating enzyme [Treponema phagedenis
           F0421]
 gi|320147188|gb|EFW38740.1| pyruvate formate-lyase 1-activating enzyme [Treponema phagedenis
           F0421]
          Length = 239

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 45/122 (36%), Gaps = 20/122 (16%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           M L    E F T+ G G    R  VF    GC L            C  CDT     Q  
Sbjct: 1   MALIHSHESFGTVDGPGI---RYVVF--LQGCPLRCKY--------CHNCDT---WFQKD 44

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
                  ++  + I +        G    +TGGEPL+Q +    L +   K G   A++T
Sbjct: 45  AKFVETAEETFEKIIKYKRFIRSGG--VTVTGGEPLMQPEYVCELFKLCKKEGIHTAIDT 102

Query: 119 NG 120
           +G
Sbjct: 103 SG 104


>gi|239628873|ref|ZP_04671904.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519019|gb|EEQ58885.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 255

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 63/177 (35%), Gaps = 39/177 (22%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
            E F T+ G G       +F   SGC +           +C +C   DT         G 
Sbjct: 10  VESFGTVDGPGIRM---VIF--LSGCPM-----------RCLYCHNPDT----WDPKGGN 49

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
              V+++    E+     +K G    ++GGEPL+Q+     L +A   R     ++T+G 
Sbjct: 50  PMTVEEILAQFEQARPFYKKGG--ITVSGGEPLMQIRFVTELFEAARARNIHTCLDTSG- 106

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
                    I  +P    +  +     L  V   V +  ++    +  +   QP D 
Sbjct: 107 ---------ITFNP--SSEGIMAMFDRLMAVTDLVMLDIKHIDPEEHIKLCAQPQDN 152


>gi|224023837|ref|ZP_03642203.1| hypothetical protein BACCOPRO_00554 [Bacteroides coprophilus DSM
           18228]
 gi|224017059|gb|EEF75071.1| hypothetical protein BACCOPRO_00554 [Bacteroides coprophilus DSM
           18228]
          Length = 242

 Score = 63.1 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 29/129 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVG 56
           +  +   + +L   G + G   R+ VF    GCN            +C +C   DT  + 
Sbjct: 1   MIRVH-SYESL---GTYDGPGIRLVVF--LQGCNF-----------RCLYCANPDT--ID 41

Query: 57  IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEI 114
            +G        + L   + ++   G+K G     +GGEP  Q    +PL ++L + G  I
Sbjct: 42  AKGESKETSPEEILKMAVSQKPFFGKKGG--ITFSGGEPTFQARELIPLFRSLKEAGIHI 99

Query: 115 AVETNGTIE 123
            V+TNG+I 
Sbjct: 100 CVDTNGSIW 108


>gi|237710756|ref|ZP_04541237.1| pyruvate formate-lyase activating enzyme [Bacteroides sp.
           9_1_42FAA]
 gi|229455478|gb|EEO61199.1| pyruvate formate-lyase activating enzyme [Bacteroides sp.
           9_1_42FAA]
          Length = 168

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 25/115 (21%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GCN            +C +C   DT     + T+     +D++
Sbjct: 11  GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDTIDTKGESTET---TIDEI 54

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K+G     +GGEP LQ    +PL Q L ++   I ++TNG+I 
Sbjct: 55  VRMAVSQKAFFGKKGG-VTFSGGEPTLQAKALIPLFQRLKEQSIHICIDTNGSIW 108


>gi|307693876|ref|ZP_07636113.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Ruminococcaceae bacterium D16]
          Length = 230

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 23/103 (22%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG--IQGTKGGRYNVDQLADLIEEQWITG 81
            VF    GC+            +C FC     G  +        N ++L   ++++    
Sbjct: 21  TVF--LGGCDF-----------RCPFC---HNGELVLSPAPAEMNQEELLAFLKKRQGLL 64

Query: 82  EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
           +       +TGGEPLL+ D+P L++A+   G+ + ++TNG+  
Sbjct: 65  DG----VCITGGEPLLRPDLPQLLEAVKALGYPVKLDTNGSHP 103


>gi|294792114|ref|ZP_06757262.1| Fe-S oxidoreductase of MoaA family protein [Veillonella sp. 6_1_27]
 gi|294457344|gb|EFG25706.1| Fe-S oxidoreductase of MoaA family protein [Veillonella sp. 6_1_27]
          Length = 198

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 60/198 (30%), Gaps = 64/198 (32%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRG----------- 111
             V ++AD+IE              +TGGEPLLQ    V LI  LN+R            
Sbjct: 1   MTVAEVADVIECLG------NHRITITGGEPLLQEAAVVELIDELNRRKALKIQDSPSSQ 54

Query: 112 -----------------------FEIAVETNGTIEPPQGID--WICVSPKAGCDLK---- 142
                                  ++  +ETNGTI P    D  W     K    L     
Sbjct: 55  SDLTRINDVDKDVDKRERPNNSPYDFNIETNGTIVPSFHRDNVWFTYDYKTPSSLAEESM 114

Query: 143 ----IKGGQE---LKLVF---PQVNVSPENYIGFD-FERFSLQPMDGPFLEENTNLAISY 191
                K   E   +K V      ++        +    +  + P+ G     +    I Y
Sbjct: 115 NIDIFKVATERDLIKFVVGSPEDLDCMRRIISKYPTVAQIYVSPVWGQIEAAS---IIDY 171

Query: 192 CFQNP--KWRLSVQTHKF 207
                    R  +Q HKF
Sbjct: 172 MKTYNLQNVRFQLQIHKF 189


>gi|317052447|ref|YP_004113563.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfurispirillum indicum S5]
 gi|316947531|gb|ADU67007.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfurispirillum indicum S5]
          Length = 236

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 29/128 (22%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            VF    GCNL           +CR+C    + +   + GR   DQL + I+   I    
Sbjct: 26  TVF--THGCNL-----------RCRYCHNPALVLG--QPGRSRQDQLLEYIDRHQIGA-- 68

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPP-------QGIDWICVSP 135
                 +TGGEPL Q ++  L+Q L  R   I ++TNGT+          + +D++ V  
Sbjct: 69  ----VAITGGEPLFQRELETLLQQLRSRKIRIKLDTNGTLPHRLKQVLEQELVDFVAVDV 124

Query: 136 KAGCDLKI 143
           KA  D  +
Sbjct: 125 KAFNDADM 132


>gi|302384753|ref|YP_003820575.1| pyruvate formate-lyase activating enzyme [Clostridium
           saccharolyticum WM1]
 gi|302195381|gb|ADL02952.1| pyruvate formate-lyase activating enzyme [Clostridium
           saccharolyticum WM1]
          Length = 257

 Score = 62.3 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 27/129 (20%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
           E F T+ G G       +F    GC +           +C++C   DT     +   G  
Sbjct: 9   ESFGTVDGPGVRM---VIF--LQGCPM-----------RCQYCHNPDT----WKMAGGTP 48

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
              ++L    E         G     TGGEPL+Q+D    L +A  K+     ++T+G +
Sbjct: 49  MTAEELLKQFES--SRNFYRGGGITATGGEPLMQLDFVTELFEAAKKKDIHTCLDTSGVM 106

Query: 123 EPPQGIDWI 131
               G D++
Sbjct: 107 FHRNGPDYL 115


>gi|307718379|ref|YP_003873911.1| hypothetical protein STHERM_c06800 [Spirochaeta thermophila DSM
           6192]
 gi|306532104|gb|ADN01638.1| hypothetical protein STHERM_c06800 [Spirochaeta thermophila DSM
           6192]
          Length = 240

 Score = 62.3 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 22/126 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
             GCNL           +C +C       +  +G   +     + I           +  
Sbjct: 27  TGGCNL-----------RCPYC----HNPELVEGDPEDFLPWEE-IRAFLTRRRGILKGV 70

Query: 89  VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLK 142
           V TGGEPLL+  +P LI+ +   G+   ++TNGT+          +D++ V  K   DL 
Sbjct: 71  VFTGGEPLLKGFLPSLIEEVRGMGYACKLDTNGTLPQRLEEVLPLLDYVAVDFKTAPDLY 130

Query: 143 IKGGQE 148
            + G +
Sbjct: 131 HRVGGD 136


>gi|315185591|gb|EFU19360.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Spirochaeta thermophila DSM 6578]
          Length = 240

 Score = 62.3 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 22/126 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
             GCNL           +C +C       +  +G   +     + I           +  
Sbjct: 27  TGGCNL-----------RCPYC----HNPELVEGDSEDFLPWEE-IRAFLTRRRGILKGV 70

Query: 89  VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLK 142
           V TGGEPLL+  +P LI+ +   G+   ++TNGT+          +D++ V  K   DL 
Sbjct: 71  VFTGGEPLLKGFLPSLIEEVRGMGYACKLDTNGTLPQRLEEVLPLLDYVAVDFKTAPDLY 130

Query: 143 IKGGQE 148
            + G +
Sbjct: 131 HRVGGD 136


>gi|299143206|ref|ZP_07036286.1| pyruvate formate-lyase 1-activating enzyme [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298517691|gb|EFI41430.1| pyruvate formate-lyase 1-activating enzyme [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 248

 Score = 62.0 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 21/105 (20%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           G   VF    GC L           +C FC   DT         G    V+++ +   + 
Sbjct: 17  GVRTVFF-LQGCPL-----------RCAFCHNVDTQ----NPFGGRNITVEEIVERSRKM 60

Query: 78  WITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120
                        +GGEP L     L  I+A+   G  + V+T+G
Sbjct: 61  KPYFRNGKGGVTFSGGEPTLDGKFLLDAIKAVKAEGIHVTVDTSG 105


>gi|149189655|ref|ZP_01867937.1| pyruvate formate lyase II activase [Vibrio shilonii AK1]
 gi|148836467|gb|EDL53422.1| pyruvate formate lyase II activase [Vibrio shilonii AK1]
          Length = 303

 Score = 62.0 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 11  LTLQ-GEGGHAGRVAVFCRFSGCNLWS-----------GREQDRLSAQCRFCDTDFVGIQ 58
            +L  GEG       VF  F GC L                  R  A+C  CD       
Sbjct: 41  YSLNDGEGIRT---VVF--FKGCPLKCPWCANPESRSIDLVNIRREAKCLHCDVCEQDAD 95

Query: 59  GTKGGRY-------NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNK 109
               G +        +D+L   I +  +  +  G    L+GGE L+     + L++ L +
Sbjct: 96  ECPSGAFEQVGYDVTIDELLKEIAKDDVFYQTSGGGVTLSGGEILVHGRFCIELLKQLRR 155

Query: 110 RGFEIAVETNG 120
            G++ A+ET+G
Sbjct: 156 LGYKTAIETSG 166


>gi|198275686|ref|ZP_03208217.1| hypothetical protein BACPLE_01858 [Bacteroides plebeius DSM 17135]
 gi|198271315|gb|EDY95585.1| hypothetical protein BACPLE_01858 [Bacteroides plebeius DSM 17135]
          Length = 242

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 29/129 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVG 56
           +  +   + +L   G + G   R+ VF    GCN            +C +C   DT  + 
Sbjct: 1   MIRVH-SYESL---GTYDGPGIRLVVF--LQGCNF-----------RCLYCANPDT--ID 41

Query: 57  IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEI 114
            +G        + L   + ++   G+K G     +GGEP  Q    VPL + L + G  I
Sbjct: 42  AKGESKETAPEEILKMAVSQKPFFGKKGG--ITFSGGEPTFQAKALVPLFRMLKEAGIHI 99

Query: 115 AVETNGTIE 123
            V+TNG I 
Sbjct: 100 CVDTNGGIW 108


>gi|225016811|ref|ZP_03706003.1| hypothetical protein CLOSTMETH_00723 [Clostridium methylpentosum
           DSM 5476]
 gi|224950479|gb|EEG31688.1| hypothetical protein CLOSTMETH_00723 [Clostridium methylpentosum
           DSM 5476]
          Length = 266

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 24/109 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC L           +C FC   DT      G  G   +  +L D I       
Sbjct: 51  VF--LQGCPL-----------RCLFCHNPDT----WDGKAGREVSAQELVDEILTYRNYI 93

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGI 128
           +K G    L+GGEPLLQ      +++   + G   AV+T+G I   + +
Sbjct: 94  KKGG--VTLSGGEPLLQAQFTAEVLRLCKENGLHTAVDTSGCIPLERAL 140


>gi|225569138|ref|ZP_03778163.1| hypothetical protein CLOHYLEM_05218 [Clostridium hylemonae DSM
           15053]
 gi|225161937|gb|EEG74556.1| hypothetical protein CLOHYLEM_05218 [Clostridium hylemonae DSM
           15053]
          Length = 230

 Score = 61.2 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 18/101 (17%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F   +GCN            +C FC    + +   K      ++++  ++++    + 
Sbjct: 21  TIF--TAGCNF-----------RCPFCHNASLVVDTYKNEEITQEEVSAFLKKRMGVLDG 67

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
                 +TGGEPL+Q D+ P ++ + + G+ + ++TNG+  
Sbjct: 68  ----VCVTGGEPLIQSDIEPFLRQIKEMGYAVKLDTNGSFP 104


>gi|195953775|ref|YP_002122065.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933387|gb|ACG58087.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 234

 Score = 61.2 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 24/115 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           F GCNL           +C +C    + ++ T+    + D++ +L+    I+ +    + 
Sbjct: 31  FGGCNL-----------RCPYCHNKDIVLKNTEP--LDTDEVFELL----ISRKHLIEWV 73

Query: 89  VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP-----QGIDWICVSPK 136
            ++GGEP +  D  V  ++ L   GF+I ++TNGT         + +D++ +  K
Sbjct: 74  CISGGEPTIYEDKLVDFVKNLKTAGFKIKLDTNGTKPLVIKDVCEFVDYVALDVK 128


>gi|224539029|ref|ZP_03679568.1| hypothetical protein BACCELL_03928 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519357|gb|EEF88462.1| hypothetical protein BACCELL_03928 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 232

 Score = 61.2 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 26/134 (19%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GC             +C +C   DT    I    G     +++
Sbjct: 2   GTFDGPGLRLVVF--LQGCPF-----------RCLYCANPDT----IDAKGGTPTPPEEI 44

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGI 128
             +   Q +   K+G     +GGEP LQ    +PL + L   G  I ++TNG I   +  
Sbjct: 45  LQMAISQKVFFGKKGG-ITFSGGEPTLQAEALIPLFKDLKANGIHICLDTNGGIWNEKVE 103

Query: 129 DWICVSPKAGCDLK 142
           + + ++     DLK
Sbjct: 104 ELVSLTDLVLLDLK 117


>gi|189461245|ref|ZP_03010030.1| hypothetical protein BACCOP_01895 [Bacteroides coprocola DSM 17136]
 gi|189432062|gb|EDV01047.1| hypothetical protein BACCOP_01895 [Bacteroides coprocola DSM 17136]
          Length = 242

 Score = 61.2 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 29/129 (22%)

Query: 3   LYSIKEIFLTLQGEGGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVG 56
           +  +   + +L   G + G   R+ VF    GCN            +C +C   DT  + 
Sbjct: 1   MIRVH-SYESL---GTYDGPGIRLVVF--LQGCNF-----------RCLYCANPDT--ID 41

Query: 57  IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEI 114
            +G        D L   + ++   G+K G     +GGEP  Q    +PL + L + G  I
Sbjct: 42  AKGESKETSPEDILKMAVSQKPFFGKKGG--ITFSGGEPTFQAKALIPLFRMLKEEGIHI 99

Query: 115 AVETNGTIE 123
            V+TNG I 
Sbjct: 100 CVDTNGGIW 108


>gi|125973026|ref|YP_001036936.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum
           ATCC 27405]
 gi|256004823|ref|ZP_05429798.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum
           DSM 2360]
 gi|281417236|ref|ZP_06248256.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum
           JW20]
 gi|125713251|gb|ABN51743.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum
           ATCC 27405]
 gi|255991273|gb|EEU01380.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum
           DSM 2360]
 gi|281408638|gb|EFB38896.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum
           JW20]
 gi|316940739|gb|ADU74773.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum
           DSM 1313]
          Length = 238

 Score = 61.2 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 41/203 (20%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F TL G G          RF     GC L           +C +C   DT  V     
Sbjct: 11  ESFGTLDGPG---------IRFVVFMQGCPL-----------RCIYCHNRDTWDVNAGSE 50

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
              R  +D++   I+   ++G        +TGGEP+LQ D    + +   ++G   A++T
Sbjct: 51  YTPRQVIDEMMKYIDYIKVSGGG----ITVTGGEPVLQADFVAEVFRLAKEQGVHTALDT 106

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RF 171
           NG  +  +    I  +     D+K     + K++    N   + +  +  +       R+
Sbjct: 107 NGFADIEKVERLIKYTDLVLLDIKHAREDKHKIITGVSNEKIKRFALYLSDQGVPIWIRY 166

Query: 172 SLQPMDGPFLEENTNLAISYCFQ 194
            L P      E++  +A  +  +
Sbjct: 167 VLVPGY-TDDEDDLKMAADFIKK 188


>gi|304315595|ref|YP_003850740.1| pyruvate formate-lyase activating enzyme [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777097|gb|ADL67656.1| pyruvate formate-lyase activating enzyme [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 242

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 28/160 (17%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C +C   DT  +      G   + D++ + ++      
Sbjct: 24  VFM--QGC-----------LLRCAYCHNPDTWHLN----DGKEASTDEIFNDVKRYIPYM 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139
           +  G    LTGGEP LQV+    L + L       A++T+G ++  +  + +  +     
Sbjct: 67  KASGGGVTLTGGEPTLQVEFCTDLFKKLKAENIHTAIDTSGFVDIEKVEELVKYTDLFLL 126

Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
           D+K     E K +    N     +         L  +D  
Sbjct: 127 DIKHIDDDEHKKLTGVSNRKTLKFAK------YLSDIDKK 160


>gi|160937727|ref|ZP_02085087.1| hypothetical protein CLOBOL_02620 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439372|gb|EDP17124.1| hypothetical protein CLOBOL_02620 [Clostridium bolteae ATCC
           BAA-613]
          Length = 259

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 62/176 (35%), Gaps = 39/176 (22%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
           E F T+ G G       +F   SGC +           +C +C   DT         G  
Sbjct: 18  ESFGTVDGPGIRM---VIF--LSGCPM-----------RCLYCHNPDT----WDPKGGSP 57

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
              +++ D  E+     +K G    ++GGEPL+Q+     L +   K G    ++T+G  
Sbjct: 58  MTAEEILDQYEQARPFYKKGG--ITVSGGEPLMQIGFVTELFEKAKKSGIHTCLDTSG-- 113

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
                   I  +P  G    +     L      + +  ++    +  +   QP D 
Sbjct: 114 --------ITFNP--GSQAVMAHFDRLLASTDLILLDIKHIDPKEHVKLCAQPQDN 159


>gi|225575496|ref|ZP_03784106.1| hypothetical protein RUMHYD_03587 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037293|gb|EEG47539.1| hypothetical protein RUMHYD_03587 [Blautia hydrogenotrophica DSM
           10507]
          Length = 231

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 19/126 (15%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
             VF    GCN            +C FC    + +   +    + + + + ++++    +
Sbjct: 20  ATVF--LGGCNF-----------RCPFCHNSSLVLHENQQPEISQEDVLNFLKKRRGILD 66

Query: 83  KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWIC-VSPKAGCD 140
                  +TGGEP LQ  +P  +  + + G+ I ++TNG+        W   +  K   D
Sbjct: 67  G----VCITGGEPTLQKALPDFLSQIKELGYHIKLDTNGSHPQIIKTLWESHLIDKVAMD 122

Query: 141 LKIKGG 146
           +K    
Sbjct: 123 IKTSKA 128


>gi|118444194|ref|YP_878525.1| pyruvate formate-lyase activating enzyme [Clostridium novyi NT]
 gi|118134650|gb|ABK61694.1| pyruvate formate-lyase activating enzyme [Clostridium novyi NT]
          Length = 240

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 23/101 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC L           +C FC   DT         G +   ++L + I       
Sbjct: 29  VF--LQGCPL-----------RCSFCHNPDT----WDFNTGSKTTPEELVEKIIRFKPYF 71

Query: 82  EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120
           +  G     +GGEPL+Q +  L  ++   +     A++T+G
Sbjct: 72  KNNGG-VTFSGGEPLMQPEFLLKALKLCKENNIHTAIDTSG 111


>gi|210613376|ref|ZP_03289696.1| hypothetical protein CLONEX_01903 [Clostridium nexile DSM 1787]
 gi|210151218|gb|EEA82226.1| hypothetical protein CLONEX_01903 [Clostridium nexile DSM 1787]
          Length = 250

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 31/159 (19%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F  F GC +           +C +C   DT     +  KG +  VD++ +         
Sbjct: 24  IF--FQGCPM-----------RCLYCHNPDT----WEPNKGTQMTVDEVLEGFYSNMPFY 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWIC------- 132
              G    +TGGEP++Q+D  + L   L+K G    ++++G +  P    ++        
Sbjct: 67  HNGG--VTVTGGEPMMQMDFLIELFTKLHKDGIHTCIDSSGIMFQPDNETFMNKLDTLLE 124

Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
           V+     D+K    Q+ K +    N     +  +  E+ 
Sbjct: 125 VTDLIMLDIKHINPQKHKELTAHSNERILAFAKYLDEKH 163


>gi|301061749|ref|ZP_07202489.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [delta proteobacterium NaphS2]
 gi|300444137|gb|EFK08162.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [delta proteobacterium NaphS2]
          Length = 234

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 68/179 (37%), Gaps = 33/179 (18%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF   +GCN             C +C   D   V  +   G  ++  ++   +E +    
Sbjct: 22  VF--LAGCNFT-----------CPYCHNPD--LVRRKPFNGSHFDEKKIYAFLESRKGFL 66

Query: 82  EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPP-------QGIDWICV 133
           +      V++GGEP L   +P  ++ +   G+ + ++TNGT             ID+I +
Sbjct: 67  DG----VVISGGEPTLNEHLPHFLERIKHLGYPVKLDTNGTRPRMVRRLIDNGLIDYIAM 122

Query: 134 SPKA---GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAI 189
             KA      L I G    + +   V +   + +  +F    ++PM       N   AI
Sbjct: 123 DIKADPLAYPLYIAGSYNPQSILTSVEIIRNSELPHEFRTTCVKPMVNEQGIRNIAQAI 181


>gi|313145793|ref|ZP_07807986.1| pyruvate formate-lyase activating enzyme [Bacteroides fragilis
           3_1_12]
 gi|313134560|gb|EFR51920.1| pyruvate formate-lyase activating enzyme [Bacteroides fragilis
           3_1_12]
          Length = 241

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GCN            +C +C   DT    I+   G   + D++
Sbjct: 11  GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IEAKGGTPTHPDEI 53

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K+G     +GGEP  Q    +PL + L + G  I ++TNG + 
Sbjct: 54  VRMAVSQKAFFGKKGG-ITFSGGEPTFQAKALIPLFKRLKEAGIHICLDTNGGLW 107


>gi|255008076|ref|ZP_05280202.1| putative pyruvate formate-lyase 1 activating enzyme [Bacteroides
           fragilis 3_1_12]
          Length = 232

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GCN            +C +C   DT    I+   G   + D++
Sbjct: 2   GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IEAKGGTPTHPDEI 44

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K+G     +GGEP  Q    +PL + L + G  I ++TNG + 
Sbjct: 45  VRMAVSQKAFFGKKGG-ITFSGGEPTFQAKALIPLFKRLKEAGIHICLDTNGGLW 98


>gi|160882012|ref|YP_001560980.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium phytofermentans ISDg]
 gi|160430678|gb|ABX44241.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium phytofermentans ISDg]
          Length = 232

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           +L         + +C FC    + I   +  +Y+ D++ + +  +    E       ++G
Sbjct: 17  HLACTIFTKGCNFRCPFCQNASLVISSEEIPQYSEDEILNFLSSRKHILEG----ICISG 72

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIE--PPQGIDWICVSPKAGCDLK 142
           GEP +Q D+   I+ +   G+ + ++TNGT      Q ID   V      D+K
Sbjct: 73  GEPTMQPDLIDFIRKVKSMGYFVKLDTNGTHPKLIRQLIDEQSVD-MVAMDIK 124


>gi|298482014|ref|ZP_07000203.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. D22]
 gi|298271878|gb|EFI13450.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. D22]
          Length = 242

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GCN            +C +C   DT    I G  G     +++
Sbjct: 12  GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IAGKGGTPTPPEEI 54

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K G     +GGEP  Q    VPL++ L ++G  + +++NG I 
Sbjct: 55  VRMAMSQRPFFGKRGG-VTFSGGEPTFQAKALVPLVRELKEKGIHVCIDSNGGIW 108


>gi|291514350|emb|CBK63560.1| pyruvate formate-lyase 1-activating enzyme [Alistipes shahii WAL
           8301]
          Length = 232

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 26/118 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GCN            +C +C   DT    I+   G   +  ++
Sbjct: 2   GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IEAGAGTLTDPAEI 44

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQ 126
             +  +Q     + G     +GGEP  Q    VPL+++L + G  + +++NG +  P 
Sbjct: 45  LRMAVDQKPFFGRRGG-VTFSGGEPTFQAAELVPLVKSLKEAGIHVCIDSNGGVWNPA 101


>gi|237715802|ref|ZP_04546283.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D1]
 gi|260171163|ref|ZP_05757575.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D2]
 gi|293369650|ref|ZP_06616228.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides ovatus SD
           CMC 3f]
 gi|294647497|ref|ZP_06725078.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides ovatus SD
           CC 2a]
 gi|294807462|ref|ZP_06766265.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides
           xylanisolvens SD CC 1b]
 gi|299146489|ref|ZP_07039557.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 3_1_23]
 gi|229443449|gb|EEO49240.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D1]
 gi|292635354|gb|EFF53868.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides ovatus SD
           CMC 3f]
 gi|292637157|gb|EFF55594.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides ovatus SD
           CC 2a]
 gi|294445357|gb|EFG14021.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298516980|gb|EFI40861.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 3_1_23]
          Length = 242

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GCN            +C +C   DT    I G  G     +++
Sbjct: 12  GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IAGKGGTPTPPEEI 54

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K G     +GGEP  Q    VPL++ L ++G  + +++NG I 
Sbjct: 55  VRMAMSQRPFFGKRGG-VTFSGGEPTFQAKALVPLVRELKEKGIHVCIDSNGGIW 108


>gi|329938554|ref|ZP_08287979.1| oxidoreductase [Streptomyces griseoaurantiacus M045]
 gi|329302527|gb|EGG46418.1| oxidoreductase [Streptomyces griseoaurantiacus M045]
          Length = 249

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
            SGC L           +C +C   DT  +      G    VD++   IE+        G
Sbjct: 33  LSGCPL-----------RCLYCANPDTWHMR----DGRTATVDEIMAEIEKYRPFLTASG 77

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
               LTGGE LLQ      L++   + G   A++T+G
Sbjct: 78  GGVTLTGGEALLQPAFTGALLRRCKEAGLHTALDTSG 114


>gi|134297917|ref|YP_001111413.1| pyruvate formate-lyase activating enzyme [Desulfotomaculum reducens
           MI-1]
 gi|134050617|gb|ABO48588.1| pyruvate formate-lyase activating enzyme [Desulfotomaculum reducens
           MI-1]
          Length = 229

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 23/105 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +CR+C   DT         G   + D++   +       
Sbjct: 23  VF--FQGC-----------LLRCRYCHNPDT----WDLLGGQEMDSDEIVKKVRRFKSYF 65

Query: 82  EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIEP 124
              G    L+GGEPLLQ D     +Q   K G   AV+T+G I+ 
Sbjct: 66  HNNGG-ITLSGGEPLLQPDFAFAILQQCKKEGIHTAVDTSGCIDV 109


>gi|298345424|ref|YP_003718111.1| [formate-C-acetyltransferase]-activating enzyme [Mobiluncus
           curtisii ATCC 43063]
 gi|304390979|ref|ZP_07372931.1| pyruvate formate-lyase activating enzyme [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|298235485|gb|ADI66617.1| [formate-C-acetyltransferase]-activating enzyme [Mobiluncus
           curtisii ATCC 43063]
 gi|304325862|gb|EFL93108.1| pyruvate formate-lyase activating enzyme [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 302

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 28/130 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ +F   +GC L           +C +C   DT     Q  +G       L D I    
Sbjct: 81  RLTIF--LAGCPL-----------RCVYCHNPDT----WQMREGTPILAKDLLDKIVRYK 123

Query: 79  ITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI------EPPQGIDW 130
              +  G     +GGEP++Q      L++     G    ++T+G++      +  + +D 
Sbjct: 124 AVYKATGGGVTFSGGEPMMQPRFLKKLLRDTKAEGIHTNIDTSGSLGFSFSDQELELLDL 183

Query: 131 ICVSPKAGCD 140
           + +  K+G  
Sbjct: 184 VMLDVKSGNP 193


>gi|229543199|ref|ZP_04432259.1| pyruvate formate-lyase activating enzyme [Bacillus coagulans 36D1]
 gi|229327619|gb|EEN93294.1| pyruvate formate-lyase activating enzyme [Bacillus coagulans 36D1]
          Length = 245

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 25/119 (21%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
            E F T+ G G    R  VF    GC L           +C+FC   DT     +  +G 
Sbjct: 10  TESFGTVDGPGI---RYVVF--TQGCPL-----------RCKFCHNPDT----WKINEGN 49

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
             +V+++   + +     +  G    ++GGEPLL +D  + L +A  + G   A++T G
Sbjct: 50  EMSVEEIMSDVRDYLPFIKASGGGITVSGGEPLLHLDFLIELFKACKEIGVHTAIDTAG 108


>gi|255692128|ref|ZP_05415803.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides finegoldii
           DSM 17565]
 gi|260622147|gb|EEX45018.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides finegoldii
           DSM 17565]
          Length = 232

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GCN            +C +C   DT    I G  G     +++
Sbjct: 2   GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IAGKGGTPTPPEEI 44

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K G     +GGEP  Q    VPL++ L ++G  + +++NG I 
Sbjct: 45  VRMAMSQRPFFGKRGG-VTFSGGEPTFQAKALVPLVRELKEKGMHVCIDSNGGIW 98


>gi|83590292|ref|YP_430301.1| ribonucleoside-triphosphate reductase, anaerobic-like [Moorella
           thermoacetica ATCC 39073]
 gi|83573206|gb|ABC19758.1| Ribonucleoside-triphosphate reductase, anaerobic-like protein
           [Moorella thermoacetica ATCC 39073]
          Length = 234

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 32/141 (22%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            VF    GCN            +C +C    + ++ +     +  ++ +L+  +    + 
Sbjct: 24  TVF--LGGCNF-----------RCPWCHNADLVLRPSVLPEISPAEVLNLLIRRRSWVQA 70

Query: 84  EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
                 +TGGEP L       ++ L  RGF++ ++TNG+       D I          +
Sbjct: 71  ----VCITGGEPTLAPGLEEFVRTLKSRGFKVKLDTNGSQP-----DVIA---------R 112

Query: 143 IKGGQELKLVFPQVNVSPENY 163
           +  G  L  V   V   PE Y
Sbjct: 113 LLAGDLLDYVAMDVKAPPEKY 133


>gi|296129568|ref|YP_003636818.1| pyruvate formate-lyase activating enzyme [Cellulomonas flavigena
           DSM 20109]
 gi|296021383|gb|ADG74619.1| pyruvate formate-lyase activating enzyme [Cellulomonas flavigena
           DSM 20109]
          Length = 293

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 28/130 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ +F   SGC L           +C +C   DT    +Q  +G     D+L   I    
Sbjct: 71  RLTIF--LSGCPL-----------RCLYCHNPDT----MQMRRGTDVTADELLARIARYR 113

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130
                 G    ++GGEPL+Q      L++        +A++T+G      T E    +  
Sbjct: 114 GVFRATGGGVTISGGEPLMQPAFVRRLVRGAAAMDVPVAIDTSGYLGAHATDEMLDDVSL 173

Query: 131 ICVSPKAGCD 140
           + +  K+G  
Sbjct: 174 VLLDVKSGLP 183


>gi|160887576|ref|ZP_02068579.1| hypothetical protein BACOVA_05596 [Bacteroides ovatus ATCC 8483]
 gi|237722436|ref|ZP_04552917.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 2_2_4]
 gi|262407418|ref|ZP_06083966.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 2_1_22]
 gi|315919480|ref|ZP_07915720.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D2]
 gi|156107987|gb|EDO09732.1| hypothetical protein BACOVA_05596 [Bacteroides ovatus ATCC 8483]
 gi|229448246|gb|EEO54037.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 2_2_4]
 gi|262354226|gb|EEZ03318.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 2_1_22]
 gi|295087461|emb|CBK68984.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides
           xylanisolvens XB1A]
 gi|313693355|gb|EFS30190.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D2]
          Length = 232

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GCN            +C +C   DT    I G  G     +++
Sbjct: 2   GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IAGKGGTPTPPEEI 44

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K G     +GGEP  Q    VPL++ L ++G  + +++NG I 
Sbjct: 45  VRMAMSQRPFFGKRGG-VTFSGGEPTFQAKALVPLVRELKEKGIHVCIDSNGGIW 98


>gi|253563344|ref|ZP_04840801.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 3_2_5]
 gi|251947120|gb|EES87402.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 3_2_5]
          Length = 241

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GCN            +C +C   DT    I+   G   + +++
Sbjct: 11  GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IEAKGGTATDPEEI 53

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K+G     +GGEP  Q    +PL + L + G  I ++TNG + 
Sbjct: 54  VRMAVSQKAFFGKKGG-ITFSGGEPTFQAKSLIPLFKRLKEAGIHICLDTNGGLW 107


>gi|217968079|ref|YP_002353585.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Dictyoglomus turgidum DSM 6724]
 gi|217337178|gb|ACK42971.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Dictyoglomus turgidum DSM 6724]
          Length = 228

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 36/167 (21%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G  +  +F    GCN            +C FC    +  Q  KG +Y+ + + + I+ + 
Sbjct: 16  GIPSFVIF--TQGCNF-----------RCPFCHNPELISQRKKG-QYSEEFILEEIDRRR 61

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-------PPQGIDW 130
                  +  V+TGGEP LQ D+P  +  L KR   + ++TNG+           + +D+
Sbjct: 62  KL----IKGVVITGGEPTLQEDLPSFLFKLKKRRLLVKLDTNGSNPKMLVEIIKSKLLDY 117

Query: 131 ICVSPKAGCDLKIK--GGQE------LKLVFPQVNVSPENYIGFDFE 169
           + +  K       K  G  E      LK +F  + +  EN + F+  
Sbjct: 118 VAMDFKTSIPKYHKAIGLSERETSKYLKNIFESLRILKENNVRFEIR 164


>gi|315656244|ref|ZP_07909135.1| pyruvate formate-lyase activating enzyme [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315493246|gb|EFU82846.1| pyruvate formate-lyase activating enzyme [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 302

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 28/130 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ +F   +GC L           +C +C   DT     Q  +G       L D I    
Sbjct: 81  RLTIF--LAGCPL-----------RCVYCHNPDT----WQMREGTPILAKDLLDKIVRYK 123

Query: 79  ITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI------EPPQGIDW 130
              +  G     +GGEP++Q      L++     G    ++T+G++      +  + +D 
Sbjct: 124 AVYKATGGGVTFSGGEPMMQPRFLKKLLRDTKAEGIHTNIDTSGSLGFSFSDQELELLDL 183

Query: 131 ICVSPKAGCD 140
           + +  K+G  
Sbjct: 184 VMLDVKSGNP 193


>gi|315655831|ref|ZP_07908729.1| pyruvate formate-lyase activating enzyme [Mobiluncus curtisii ATCC
           51333]
 gi|315489895|gb|EFU79522.1| pyruvate formate-lyase activating enzyme [Mobiluncus curtisii ATCC
           51333]
          Length = 302

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 28/130 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ +F   +GC L           +C +C   DT     Q  +G       L D I    
Sbjct: 81  RLTIF--LAGCPL-----------RCVYCHNPDT----WQMREGTPILAKDLLDKIVRYK 123

Query: 79  ITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI------EPPQGIDW 130
              +  G     +GGEP++Q      L++     G    ++T+G++      +  + +D 
Sbjct: 124 AVYKATGGGVTFSGGEPMMQPRFLKKLLRDTKAEGIHTNIDTSGSLGFSFSDQELELLDL 183

Query: 131 ICVSPKAGCD 140
           + +  K+G  
Sbjct: 184 VMLDVKSGNP 193


>gi|158321707|ref|YP_001514214.1| glycyl-radical activating family protein [Alkaliphilus oremlandii
           OhILAs]
 gi|158141906|gb|ABW20218.1| glycyl-radical enzyme activating protein family [Alkaliphilus
           oremlandii OhILAs]
          Length = 248

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 23/110 (20%)

Query: 15  GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI 74
           GEG       +F    GC L           +C +C       +     R  V ++ DLI
Sbjct: 23  GEGIRT---TIF--LGGCPL-----------RCSWCHNPESWNENPIH-RVTVKEVMDLI 65

Query: 75  EEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR----GFEIAVETNG 120
           E   I     G     +GGEP  Q     ++ L K     G + A+ET+G
Sbjct: 66  ERDAIFYRTSGGGITFSGGEPTRQ--GEFLKTLVKNAMFLGIDTAIETSG 113


>gi|265762770|ref|ZP_06091338.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 2_1_16]
 gi|263255378|gb|EEZ26724.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 2_1_16]
 gi|301162337|emb|CBW21882.1| putative pyruvate formate-lyase 1 activating enzyme [Bacteroides
           fragilis 638R]
          Length = 241

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GCN            +C +C   DT    I+   G   + +++
Sbjct: 11  GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IEAKGGTATDPEEI 53

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K+G     +GGEP  Q    +PL + L + G  I ++TNG + 
Sbjct: 54  VRMAVSQKAFFGKKGG-ITFSGGEPTFQAKSLIPLFKRLKEAGIHICLDTNGGLW 107


>gi|53712629|ref|YP_098621.1| pyruvate formate-lyase activating enzyme [Bacteroides fragilis
           YCH46]
 gi|52215494|dbj|BAD48087.1| pyruvate formate-lyase activating enzyme [Bacteroides fragilis
           YCH46]
          Length = 241

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 26/115 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GCN            +C +C   DT    I+   G   + +++
Sbjct: 11  GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IEAKGGTATDPEEI 53

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K+G     +GGEP  Q    +PL + L ++G  I ++TNG + 
Sbjct: 54  VRMAVSQKAFFGKKGG-ITFSGGEPTFQAKSLIPLFKRLKEKGIHICLDTNGGLW 107


>gi|60680840|ref|YP_210984.1| putative pyruvate formate-lyase 1 activating enzyme [Bacteroides
           fragilis NCTC 9343]
 gi|60492274|emb|CAH07039.1| putative pyruvate formate-lyase 1 activating enzyme [Bacteroides
           fragilis NCTC 9343]
          Length = 241

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 26/115 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GCN            +C +C   DT    I+   G   + +++
Sbjct: 11  GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IEAKGGTATDPEEI 53

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K+G     +GGEP  Q    +PL + L ++G  I ++TNG + 
Sbjct: 54  VRMAVSQKAFFGKKGG-ITFSGGEPTFQAKSLIPLFKRLKEKGIHICLDTNGGLW 107


>gi|284162386|ref|YP_003401009.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Archaeoglobus profundus DSM 5631]
 gi|284012383|gb|ADB58336.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Archaeoglobus profundus DSM 5631]
          Length = 234

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 29/120 (24%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF  F GC             +C +C  ++   +G  G     +++A  I E ++     
Sbjct: 22  VF--FVGCPF-----------RCPYC-QNYRLFEG--GVEVTPEEIAKKIRENYLIEG-- 63

Query: 85  GRYCVLTGGEPLLQVDVP---LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPK 136
                LTGGEPL+Q       LI+ L + G  + ++TNG            +D++ +  K
Sbjct: 64  ---VCLTGGEPLVQNLDELTKLIELLKEYGLAVKLDTNGYYPEKLRNLVDRLDYVAMDFK 120


>gi|227500369|ref|ZP_03930431.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus
           tetradius ATCC 35098]
 gi|227217432|gb|EEI82751.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus
           tetradius ATCC 35098]
          Length = 239

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 22/105 (20%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           G   VF   SGC L           +C FC   DT         G    ++++ D  +  
Sbjct: 17  GIRTVFF-LSGCPL-----------RCVFCHNPDTQ----SPNYGRDITIEEIVDRAKRM 60

Query: 78  WITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
               +  G    ++GGEP+      V LI AL+K    + V+T+G
Sbjct: 61  KPYYKNTGG-VTISGGEPMNDGKFLVDLIDALHKENIHVTVDTSG 104


>gi|189218652|ref|YP_001939293.1| Ribonucleotide reductase of class III (anaerobic), activating
           protein [Methylacidiphilum infernorum V4]
 gi|189185510|gb|ACD82695.1| Ribonucleotide reductase of class III (anaerobic), activating
           protein [Methylacidiphilum infernorum V4]
          Length = 232

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 25/124 (20%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +F    GCN            +C +C    + +    G    +  + + ++ +    E  
Sbjct: 22  IF--TQGCNF-----------RCPYCYVPQLVVPENYGPLLPLAGVLEFLDSRKEKIEG- 67

Query: 85  GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSPK 136
               V+TGGEP LQ D+   I  + KRGF + ++TNG+           + ID++ +  K
Sbjct: 68  ---VVITGGEPTLQEDLQDFIILVKKRGFLVKLDTNGSHPEILERLIQKRLIDFVAMDFK 124

Query: 137 AGCD 140
           A  +
Sbjct: 125 APLE 128


>gi|291543729|emb|CBL16838.1| pyruvate formate-lyase 1-activating enzyme [Ruminococcus sp. 18P13]
          Length = 241

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 24/108 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF   SGC L           +C +C   DT     +  +       Q+ + I  +    
Sbjct: 24  VF--LSGCPL-----------RCLYCHNPDT----WEQKQTLCMTPPQVMEKIRSERSFL 66

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQG 127
            + G    L+GGEPL+Q      L+    + GF  A++T+G+I   Q 
Sbjct: 67  LRGG--VTLSGGEPLMQPAFCEELLTLCRQEGFHTAIDTSGSIPLSQS 112


>gi|225163578|ref|ZP_03725887.1| Pyruvate-formate lyase-activating enzyme-like protein [Opitutaceae
           bacterium TAV2]
 gi|224801813|gb|EEG20100.1| Pyruvate-formate lyase-activating enzyme-like protein [Opitutaceae
           bacterium TAV2]
          Length = 220

 Score = 59.7 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 19/104 (18%)

Query: 23  VAV-FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
            AV F    GCN            +C +C             ++        I ++  T 
Sbjct: 42  PAVVF--TQGCN-----------WRCPWC----HNTALVYPEQFTTPIPEADILQKLATR 84

Query: 82  EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124
             +    V++GGEP L  D+P  I+ +   GF I ++TNG+   
Sbjct: 85  RGKLDGVVISGGEPTLHPDLPDFIRRVRALGFLIKLDTNGSRPA 128


>gi|218130027|ref|ZP_03458831.1| hypothetical protein BACEGG_01610 [Bacteroides eggerthii DSM 20697]
 gi|217987747|gb|EEC54074.1| hypothetical protein BACEGG_01610 [Bacteroides eggerthii DSM 20697]
          Length = 246

 Score = 59.7 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 43/115 (37%), Gaps = 26/115 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GC             +C +C   DT    I    G     D++
Sbjct: 16  GTFDGPGLRLVVF--LQGCPF-----------RCLYCANPDT----IDSKGGIPTPADEI 58

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K+G     +GGEP LQ    +PL + L   G    ++TNG I 
Sbjct: 59  LQMAVSQKAFFGKKGG-ITFSGGEPTLQAENLIPLFKELKANGIHTCLDTNGGIW 112


>gi|325970893|ref|YP_004247084.1| pyruvate formate-lyase activating enzyme [Spirochaeta sp. Buddy]
 gi|324026131|gb|ADY12890.1| pyruvate formate-lyase activating enzyme [Spirochaeta sp. Buddy]
          Length = 254

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 27/123 (21%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
            E F TL G G    R  VF    GC           S +CR+C   DT         G 
Sbjct: 10  VESFGTLDGPGL---RYVVF--LQGC-----------SLRCRYCHNPDT----WNLNGGN 49

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
             + + L   I        K G    ++GGEPL Q    + L++ L + G   A++T G+
Sbjct: 50  LSDSEDLVQEILGYRNFIAKGG--VTISGGEPLKQPQFALALLKRLKQEGLHTALDTAGS 107

Query: 122 IEP 124
           +  
Sbjct: 108 VPL 110


>gi|317476758|ref|ZP_07936001.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides eggerthii
           1_2_48FAA]
 gi|316906933|gb|EFV28644.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides eggerthii
           1_2_48FAA]
          Length = 246

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 43/115 (37%), Gaps = 26/115 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GC             +C +C   DT    I    G     D++
Sbjct: 16  GTFDGPGLRLVVF--LQGCPF-----------RCLYCANPDT----IDSKGGIPTPADEI 58

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K+G     +GGEP LQ    +PL + L   G    ++TNG I 
Sbjct: 59  LQMAVSQKAFFGKKGG-ITFSGGEPTLQAETLIPLFKELKANGIHTCLDTNGGIW 112


>gi|323705233|ref|ZP_08116809.1| pyruvate formate-lyase activating enzyme [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535659|gb|EGB25434.1| pyruvate formate-lyase activating enzyme [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 242

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 22/107 (20%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC L           +C +C   DT       + G   + D++ + ++      
Sbjct: 24  VFM--QGCPL-----------RCAYCHNPDT----WDYSCGKEVSTDEIFNDVKRYIPYM 66

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQ 126
           +  G    LTGGEP LQ +    L + L       A++T+G ++  +
Sbjct: 67  KASGGGVTLTGGEPTLQPEFCEDLFKKLKASFIHTALDTSGYVDIDK 113


>gi|189467295|ref|ZP_03016080.1| hypothetical protein BACINT_03682 [Bacteroides intestinalis DSM
           17393]
 gi|189435559|gb|EDV04544.1| hypothetical protein BACINT_03682 [Bacteroides intestinalis DSM
           17393]
          Length = 232

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 26/115 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GC             +C +C   DT    I    G     +++
Sbjct: 2   GTFDGPGLRLVVF--LQGCPF-----------RCLYCANPDT----IDAKGGTPTPPEEI 44

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K+G     +GGEP LQ    +PL + L   G  I ++TNG I 
Sbjct: 45  LQMAISQKAFFGKKGG-ITFSGGEPTLQAEALIPLFKDLKANGIHICLDTNGGIW 98


>gi|225163391|ref|ZP_03725709.1| (Formate-C-acetyltransferase)-activating enzyme [Opitutaceae
           bacterium TAV2]
 gi|224801979|gb|EEG20257.1| (Formate-C-acetyltransferase)-activating enzyme [Opitutaceae
           bacterium TAV2]
          Length = 386

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 59/171 (34%), Gaps = 49/171 (28%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC++           +C +C   DT    +    G   ++D++      Q    
Sbjct: 27  VF--TQGCHM-----------RCVYCHNPDT----LDLAAGRLVSLDEILQRAIRQKPYY 69

Query: 82  EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139
              G    ++GGEP L     +PL Q L+  G    ++TNG I     +D          
Sbjct: 70  GTRGG-VTISGGEPTLHRKTLLPLFQQLHANGIHTCLDTNGLI-----LD---------- 113

Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAIS 190
                   EL+ ++ + ++   +    D      Q          T LA++
Sbjct: 114 -------DELRALYAETDLVLLDIKHIDDA----QHRRLTGTSNATPLAVA 153


>gi|297162459|gb|ADI12171.1| radical SAM domain-containing protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 472

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 18/99 (18%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL           +C +C   +   +    G  + ++  DL+++     + + R  + 
Sbjct: 104 GCNL-----------RCPYC---YASSEKCLPGELSTEESLDLVDQ---AADMDVRQMIF 146

Query: 91  TGGEPLLQVDVPLIQA-LNKRGFEIAVETNGTIEPPQGI 128
           TGGEP+L+ D+ L+ +    RG  + + TNGT+     I
Sbjct: 147 TGGEPMLRKDLFLVASHARDRGLTVNMITNGTMIRTAEI 185


>gi|187251593|ref|YP_001876075.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Elusimicrobium minutum Pei191]
 gi|186971753|gb|ACC98738.1| Anaerobic ribonucleoside-triphosphate reductase activating protein
           [Elusimicrobium minutum Pei191]
          Length = 205

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 18/100 (18%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +F    GCN+           +C +C    +         YN D++   +E++    +  
Sbjct: 22  IFM--QGCNM-----------RCPYCHNPELVYPNMLLEPYNEDEVFAFLEKRKGALDG- 67

Query: 85  GRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
               V+TGGEP +  D+P  +  +   G+++ ++TNGT+ 
Sbjct: 68  ---VVVTGGEPAVHADLPEFLAKIKALGYKVKLDTNGTMP 104


>gi|290955630|ref|YP_003486812.1| oxidoreductase [Streptomyces scabiei 87.22]
 gi|260645156|emb|CBG68242.1| Putative oxidoreductase [Streptomyces scabiei 87.22]
          Length = 244

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 28/117 (23%)

Query: 26  FCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
           F   +GC L           +C +C   DT  +      G    VD++   IE+      
Sbjct: 27  FV--AGCPL-----------RCLYCANPDTWHMR----DGKETTVDEVMAEIEKYRPFLT 69

Query: 83  KEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWI 131
             G    LTGGEPLLQ      +++   + G   A++T+G      T E     D +
Sbjct: 70  TAGGGVTLTGGEPLLQSGFTGEILRRSKELGLHTALDTSGFLGVRATDELLDATDLV 126


>gi|110800676|ref|YP_695803.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
           ATCC 13124]
 gi|110675323|gb|ABG84310.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
           ATCC 13124]
          Length = 235

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 46/133 (34%), Gaps = 29/133 (21%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C FC   DT        KG  Y  ++L + I+    
Sbjct: 20  IRFVVFMQGC-----------GIRCAFCHNPDT----WCKDKGTEYTPEELVNKIKRFKT 64

Query: 80  TGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGT-----IEPPQGIDWIC 132
                G     +GGEPLLQ +  L  ++   K G    ++T G       E  + +D I 
Sbjct: 65  YFNASGGGVTFSGGEPLLQPEFLLECLKLCKKEGIHTTLDTAGVGLGNYEEILEYVDLIL 124

Query: 133 VSPKAGCDLKIKG 145
              K     K K 
Sbjct: 125 FDVKETDPEKYKN 137


>gi|182626346|ref|ZP_02954101.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens D
           str. JGS1721]
 gi|177908365|gb|EDT70910.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens D
           str. JGS1721]
          Length = 235

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 46/133 (34%), Gaps = 29/133 (21%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C FC   DT        KG  Y  ++L + I+    
Sbjct: 20  IRFVVFMQGC-----------GIRCAFCHNPDT----WCKDKGTEYTPEELVNKIKRFKT 64

Query: 80  TGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGT-----IEPPQGIDWIC 132
                G     +GGEPLLQ +  L  ++   K G    ++T G       E  + +D I 
Sbjct: 65  YFNASGGGVTFSGGEPLLQPEFLLECLKLCKKEGIHTTLDTAGVGLGNYEEILEYVDLIL 124

Query: 133 VSPKAGCDLKIKG 145
              K     K K 
Sbjct: 125 FDVKETDPEKYKN 137


>gi|160934052|ref|ZP_02081439.1| hypothetical protein CLOLEP_02915 [Clostridium leptum DSM 753]
 gi|156866725|gb|EDO60097.1| hypothetical protein CLOLEP_02915 [Clostridium leptum DSM 753]
          Length = 245

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 35/98 (35%), Gaps = 16/98 (16%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
             GC L           +C FC         T       D   D+++ +           
Sbjct: 31  LQGCPL-----------RCGFCHNPDTWQACTGKAVTPEDAFEDILKYKNFISSGG---V 76

Query: 89  VLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEP 124
            L+GGEPLLQ +    LI   +  G   AV+T G+I  
Sbjct: 77  TLSGGEPLLQPEFCQALISLCHSAGIHCAVDTAGSIPL 114


>gi|110802629|ref|YP_698492.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
           SM101]
 gi|168211839|ref|ZP_02637464.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens B
           str. ATCC 3626]
 gi|168218087|ref|ZP_02643712.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
           NCTC 8239]
 gi|110683130|gb|ABG86500.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
           SM101]
 gi|170710218|gb|EDT22400.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens B
           str. ATCC 3626]
 gi|182379907|gb|EDT77386.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
           NCTC 8239]
          Length = 235

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 46/133 (34%), Gaps = 29/133 (21%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C FC   DT        KG  Y  ++L + I+    
Sbjct: 20  IRFVVFMQGC-----------GIRCAFCHNPDT----WCKDKGTEYTPEELVNKIKRFKT 64

Query: 80  TGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGT-----IEPPQGIDWIC 132
                G     +GGEPLLQ +  L  ++   K G    ++T G       E  + +D I 
Sbjct: 65  YFNASGGGVTFSGGEPLLQPEFLLECLKLCKKEGIHTTLDTAGVGLGNYEEILEYVDLIL 124

Query: 133 VSPKAGCDLKIKG 145
              K     K K 
Sbjct: 125 FDVKETDPEKYKN 137


>gi|310659693|ref|YP_003937414.1| pyruvate formate lyase activating enzyme 1 [Clostridium sticklandii
           DSM 519]
 gi|308826471|emb|CBH22509.1| pyruvate formate lyase activating enzyme 1 [Clostridium
           sticklandii]
          Length = 252

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 21/105 (20%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           G   +F    GC L           +C +C   D+  +  Q       + +++     + 
Sbjct: 18  GIRTIFF-LQGCPL-----------RCAYCHNPDSQNMFSQ----KHISPEEVLKTASKY 61

Query: 78  WITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
                + G     +GGEPLLQ    V  ++ L + GF  A++T+G
Sbjct: 62  KAYYNRTGGGVTFSGGEPLLQGEFLVETLKLLKENGFNTAIDTSG 106


>gi|168207460|ref|ZP_02633465.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens E
           str. JGS1987]
 gi|170661174|gb|EDT13857.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens E
           str. JGS1987]
          Length = 235

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 46/133 (34%), Gaps = 29/133 (21%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C FC   DT        KG  Y  ++L + I+    
Sbjct: 20  IRFVVFMQGC-----------GIRCAFCHNPDT----WCKDKGTEYTPEELVNKIKRFKT 64

Query: 80  TGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGT-----IEPPQGIDWIC 132
                G     +GGEPLLQ +  L  ++   K G    ++T G       E  + +D I 
Sbjct: 65  YFNASGGGVTFSGGEPLLQPEFLLECLKLCKKEGIHTTLDTAGVGLGNYEEILEYVDLIL 124

Query: 133 VSPKAGCDLKIKG 145
              K     K K 
Sbjct: 125 FDVKETDPEKYKN 137


>gi|188589411|ref|YP_001921719.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum
           E3 str. Alaska E43]
 gi|188499692|gb|ACD52828.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 236

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC           S +C++C   DT         G  Y  + L   IE      
Sbjct: 24  VF--FQGC-----------SLRCKYCHNPDT----WTYDGGEEYTPEDLVKKIERYKTYF 66

Query: 82  EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120
           E        +GGEPL Q +  L  ++   +RG    ++T+G
Sbjct: 67  ESSNGGVTFSGGEPLRQPEFLLEVLKLCKERGINTCLDTSG 107


>gi|187935671|ref|YP_001886761.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum B
           str. Eklund 17B]
 gi|187723824|gb|ACD25045.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum B
           str. Eklund 17B]
          Length = 236

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC           S +C++C   DT         G  Y  ++L   IE      
Sbjct: 24  VF--FQGC-----------SLRCKYCHNPDT----WTYDGGDEYTPEELVKKIERYKTYF 66

Query: 82  EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120
           +        +GGEPL Q +  L  ++   ++G    ++T+G
Sbjct: 67  KSSNGGVTFSGGEPLRQPEFLLEVLKLCKEKGIHTCLDTSG 107


>gi|149134307|ref|YP_001293879.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
           str. 13]
 gi|18144815|dbj|BAB80860.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
           str. 13]
          Length = 235

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 46/133 (34%), Gaps = 29/133 (21%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C FC   DT        KG  Y  ++L + I+    
Sbjct: 20  IRFVVFMQGC-----------GIRCAFCHNPDT----WCKDKGTEYTPEELVNKIKRFKT 64

Query: 80  TGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGT-----IEPPQGIDWIC 132
                G     +GGEPLLQ +  L  ++   K G    ++T G       E  + +D I 
Sbjct: 65  YFNASGGGVTFSGGEPLLQPEFLLECLKLCKKEGIHTTLDTAGVGLGNYEEILEYVDLIL 124

Query: 133 VSPKAGCDLKIKG 145
              K     K K 
Sbjct: 125 FDVKETDPEKYKS 137


>gi|289192125|ref|YP_003458066.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938575|gb|ADC69330.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
          Length = 229

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 23/124 (18%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCN            +C++C       +     +Y V+++ D I E  +         ++
Sbjct: 18  GCNF-----------KCKYC-----FFKPLACKKYKVEEILDKILE--VNMSYGLNKILI 59

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
            GGEP LQ D+  L + L   GF + + TNG       +D + V       + +K   E 
Sbjct: 60  AGGEPTLQKDLVELTKLLKDEGFYLMLSTNG-YYLKDMLDKLEVD---EIHIDMKAYDEN 115

Query: 150 KLVF 153
           K ++
Sbjct: 116 KHIY 119


>gi|29350145|ref|NP_813648.1| pyruvate formate-lyase activating enzyme [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29342057|gb|AAO79842.1| pyruvate formate-lyase activating enzyme [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 242

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GCN            +C +C   DT    I G  G     +++
Sbjct: 12  GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IAGKGGTPTPPEEI 54

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K G     +GGEP  Q    VPL++ L +RG  + +++NG + 
Sbjct: 55  VRMAMSQRPFFGKRGG-ITFSGGEPTFQAKALVPLVRELKERGIHVCLDSNGGLW 108


>gi|85859089|ref|YP_461291.1| pyruvate formate-lyase activating enzyme [Syntrophus aciditrophicus
           SB]
 gi|85722180|gb|ABC77123.1| pyruvate formate-lyase activating enzyme [Syntrophus aciditrophicus
           SB]
          Length = 251

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 18/101 (17%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VFC   GCN            +C +C       +      Y        I          
Sbjct: 41  VFC--QGCNF-----------RCSYC----HNPELVNPVLYTECNPEAEILSFLEKRVGR 83

Query: 85  GRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124
                +TGGEP +Q D+P  +  L  RG+ + ++TNG++  
Sbjct: 84  LDAVTVTGGEPTIQKDLPSFLAWLKCRGYLVKLDTNGSMPV 124


>gi|251779583|ref|ZP_04822503.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243083898|gb|EES49788.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 236

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC           S +C++C   DT         G  Y  + L   IE      
Sbjct: 24  VF--FQGC-----------SLRCKYCHNPDT----WTYDGGEEYTPEDLVKKIERYKTYF 66

Query: 82  EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120
           E        +GGEPL Q +  L  ++   +RG    ++T+G
Sbjct: 67  ESSNGGVTFSGGEPLRQPEFLLEVLKLCKERGINTCLDTSG 107


>gi|15669828|ref|NP_248642.1| coenzyme PQQ synthesis protein PqqE [Methanocaldococcus jannaschii
           DSM 2661]
 gi|41018449|sp|Q59026|Y1632_METJA RecName: Full=Uncharacterized protein MJ1632
 gi|1592222|gb|AAB99653.1| coenzyme PQQ synthesis protein (pqqE) [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 255

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 23/124 (18%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCN            +C++C       +     +Y+VD++ + I E  +    +    ++
Sbjct: 44  GCNF-----------KCKYC-----FFKPLSCKKYSVDEILNKILE--VNENYKLDKILI 85

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
            GGEP LQ D+  L + L   GF + + TNG       +D + V       + +K   E 
Sbjct: 86  AGGEPTLQNDLSELTKLLKDEGFYLMLSTNG-YYLKDMLDKLEVD---EIHIDLKAYDEN 141

Query: 150 KLVF 153
           K ++
Sbjct: 142 KHIY 145


>gi|297155243|gb|ADI04955.1| radical SAM family protein [Streptomyces bingchenggensis BCW-1]
          Length = 170

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 13/92 (14%)

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGI 128
           AD++E     G       V++GGEPL Q     P+I+AL + G  + +ETNGT+ P   +
Sbjct: 4   ADVVERLLAFGVG---LIVISGGEPLNQQSRLEPVIRALREAGIAVEIETNGTVAPQAAL 60

Query: 129 DW----ICVSPKAGCDLKIKGGQELKLVFPQV 156
                   VSPK    L   G  E + + P+V
Sbjct: 61  AAAGIRFNVSPK----LAHSGIAEKRRIVPEV 88


>gi|269976907|ref|ZP_06183881.1| pyruvate formate-lyase 1-activating enzyme [Mobiluncus mulieris
           28-1]
 gi|307701157|ref|ZP_07638179.1| pyruvate formate-lyase 1-activating enzyme [Mobiluncus mulieris
           FB024-16]
 gi|269934738|gb|EEZ91298.1| pyruvate formate-lyase 1-activating enzyme [Mobiluncus mulieris
           28-1]
 gi|307613551|gb|EFN92798.1| pyruvate formate-lyase 1-activating enzyme [Mobiluncus mulieris
           FB024-16]
          Length = 263

 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 28/130 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   +GC L           +C +C   DT    +Q  +G     D L D I    
Sbjct: 42  RLTVF--LAGCPL-----------RCVYCHNPDT----LQMREGTPVLADDLLDKILRYK 84

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130
              +  G     +GGEP++Q      L++     G    ++T+G      + +  + +D 
Sbjct: 85  AVYQATGGGVTFSGGEPMMQPMFLKRLLRGAKANGVHTNIDTSGFLGANFSDQDLELLDM 144

Query: 131 ICVSPKAGCD 140
           + +  K+G  
Sbjct: 145 VMLDVKSGNP 154


>gi|168214980|ref|ZP_02640605.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
           CPE str. F4969]
 gi|170713601|gb|EDT25783.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
           CPE str. F4969]
          Length = 235

 Score = 58.5 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 46/133 (34%), Gaps = 29/133 (21%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C FC   DT        KG  Y  ++L + I+    
Sbjct: 20  IRFVVFMQGC-----------GIRCAFCHNPDT----WCKDKGTEYTPEELVNKIKRFKT 64

Query: 80  TGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGT-----IEPPQGIDWIC 132
                G     +GGEPLLQ +  L  ++   K G    ++T G       E  + +D I 
Sbjct: 65  YFNASGGGVTFSGGEPLLQPEFLLECLKLCKKEGIHTTLDTAGVGLGNYEEILEYVDLIL 124

Query: 133 VSPKAGCDLKIKG 145
              K     K K 
Sbjct: 125 FDVKEIDPEKYKN 137


>gi|281358833|ref|ZP_06245305.1| pyruvate formate-lyase activating enzyme [Victivallis vadensis ATCC
           BAA-548]
 gi|281314701|gb|EFA98742.1| pyruvate formate-lyase activating enzyme [Victivallis vadensis ATCC
           BAA-548]
          Length = 237

 Score = 58.5 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 29/123 (23%)

Query: 8   EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F TL G G        VF    GC L           +CR+C   DT     +   G 
Sbjct: 12  ESFGTLDGPGVRFV----VF--LQGCPL-----------RCRYCHNPDT----WELGGGM 50

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGT 121
             +  ++   IE              L+GGEPL+Q +    +++   + GF  A++T G+
Sbjct: 51  EISSAEVVGKIES--CRNFIRSGGVTLSGGEPLMQPEFARDILERCARAGFHTALDTAGS 108

Query: 122 IEP 124
           +  
Sbjct: 109 VPL 111


>gi|332180934|gb|AEE16622.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Treponema brennaborense DSM 12168]
          Length = 252

 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 28/129 (21%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
            A+F    GCNL           +C +C +T+ V          +  Q+   +E++    
Sbjct: 24  AALF--LGGCNL-----------RCPYCYNTELVTGNALPEDAVSASQVLAHLEKRKNVL 70

Query: 82  EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE---------PPQGIDWI 131
                  V++GGEPLL      LI      G++I ++TNGT+          P    D++
Sbjct: 71  TGF----VISGGEPLLSPVTEYLITQARALGYKIKLDTNGTLPERLSHLLQSPALCPDFV 126

Query: 132 CVSPKAGCD 140
            +  K   +
Sbjct: 127 ALDVKTSPE 135


>gi|330995626|ref|ZP_08319526.1| pyruvate formate-lyase 1-activating enzyme [Paraprevotella
           xylaniphila YIT 11841]
 gi|329575032|gb|EGG56585.1| pyruvate formate-lyase 1-activating enzyme [Paraprevotella
           xylaniphila YIT 11841]
          Length = 243

 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 46/124 (37%), Gaps = 33/124 (26%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F T+ G G          RF     GC L           +C +C   DT   G    
Sbjct: 13  ESFGTVDGPG---------IRFVTFLQGCPL-----------RCLYCHNPDTWDAGRPAR 52

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
              +   ++L   + +      + G    LTGGEPLLQ D      +   + G   A++T
Sbjct: 53  Y--QMAPEELLAEVLKVRSFIARGG--VTLTGGEPLLQADFCREFFRLCREEGLHTALDT 108

Query: 119 NGTI 122
           +G +
Sbjct: 109 SGAV 112


>gi|153807860|ref|ZP_01960528.1| hypothetical protein BACCAC_02144 [Bacteroides caccae ATCC 43185]
 gi|149129469|gb|EDM20683.1| hypothetical protein BACCAC_02144 [Bacteroides caccae ATCC 43185]
          Length = 232

 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GCN            +C +C   DT    I G  G     +++
Sbjct: 2   GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IAGKGGTPTPPEEI 44

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K G     +GGEP  Q    VPL++ L ++G  + +++NG + 
Sbjct: 45  IRMAMSQRPFFGKRGG-ITFSGGEPTFQAKALVPLVRELKEKGIHVCIDSNGGLW 98


>gi|227876187|ref|ZP_03994303.1| [formate-C-acetyltransferase]-activating enzyme [Mobiluncus
           mulieris ATCC 35243]
 gi|306819463|ref|ZP_07453170.1| pyruvate formate-lyase activating enzyme [Mobiluncus mulieris ATCC
           35239]
 gi|227843148|gb|EEJ53341.1| [formate-C-acetyltransferase]-activating enzyme [Mobiluncus
           mulieris ATCC 35243]
 gi|304647755|gb|EFM45073.1| pyruvate formate-lyase activating enzyme [Mobiluncus mulieris ATCC
           35239]
          Length = 302

 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 28/130 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   +GC L           +C +C   DT    +Q  +G     D L D I    
Sbjct: 81  RLTVF--LAGCPL-----------RCVYCHNPDT----LQMREGTPVLADDLLDKILRYK 123

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130
              +  G     +GGEP++Q      L++     G    ++T+G      + +  + +D 
Sbjct: 124 AVYQATGGGVTFSGGEPMMQPMFLKRLLRGAKANGVHTNIDTSGFLGANFSDQDLELLDM 183

Query: 131 ICVSPKAGCD 140
           + +  K+G  
Sbjct: 184 VMLDVKSGNP 193


>gi|329954696|ref|ZP_08295756.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides clarus YIT
           12056]
 gi|328527237|gb|EGF54241.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides clarus YIT
           12056]
          Length = 232

 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 26/115 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GC             +C +C   DT    I    G     +++
Sbjct: 2   GTFDGPGLRLVVF--LQGCPF-----------RCLYCANPDT----IDAKGGTPTPANEI 44

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K+G     +GGEP LQ    +PL + L   G  I ++TNG I 
Sbjct: 45  LQMAISQKAFFGKKGG-ITFSGGEPTLQAEALIPLFRDLKANGIHICLDTNGGIW 98


>gi|227542034|ref|ZP_03972083.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182182|gb|EEI63154.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 289

 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 26/128 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
            SGC L           +C +C   DT    +   +G   +V+ +   I+         G
Sbjct: 72  LSGCPL-----------RCVYCHNPDT----MDMKEGTLEDVEAIIKKIKRYRPVFNASG 116

Query: 86  RYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDWICVSPKA 137
               ++GGEPL Q+     +++A++  G   A++T+G      T      ID   +  K+
Sbjct: 117 GGLTISGGEPLFQIAFTRRILEAVHAAGIHTAIDTSGFLGARLTDNDIANIDLFLLDVKS 176

Query: 138 GCDLKIKG 145
           G     K 
Sbjct: 177 GFPDTYKR 184


>gi|227488973|ref|ZP_03919289.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091049|gb|EEI26361.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 268

 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 26/128 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
            SGC L           +C +C   DT    +   +G   +V+ +   I+         G
Sbjct: 51  LSGCPL-----------RCVYCHNPDT----MDMKEGTLEDVEAIIKKIKRYRPVFNASG 95

Query: 86  RYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDWICVSPKA 137
               ++GGEPL Q+     +++A++  G   A++T+G      T      ID   +  K+
Sbjct: 96  GGLTISGGEPLFQIAFTRRILEAVHAAGIHTAIDTSGFLGARLTDNDIANIDLFLLDVKS 155

Query: 138 GCDLKIKG 145
           G     K 
Sbjct: 156 GFPDTYKR 163


>gi|256811264|ref|YP_003128633.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
 gi|256794464|gb|ACV25133.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
          Length = 229

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 23/124 (18%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCN            +C++C       +      Y+V++L + I E  +         ++
Sbjct: 18  GCNF-----------KCKYC-----FFKPLSCKNYSVEELLNKILE--VNENYNINKILI 59

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
            GGEP LQ D+P L   L   GF I + TNG       +D + V       + +K   E 
Sbjct: 60  AGGEPTLQKDLPKLTNILKDEGFYIMLSTNG-YYLKDMVDKLEVD---EIHIDLKAYTEK 115

Query: 150 KLVF 153
           K ++
Sbjct: 116 KHIY 119


>gi|325265165|ref|ZP_08131891.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium sp. D5]
 gi|324029569|gb|EGB90858.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium sp. D5]
          Length = 231

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 18/99 (18%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F   +GCN            +C FC    +            +++   ++++    + 
Sbjct: 21  TIF--TAGCNF-----------RCPFCHNASLVTHVDVNNNIPEEEVFSFLKKRKGVLDG 67

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
                 +TGGEPLLQ D+   I+A+   G+ + ++TNG+
Sbjct: 68  ----VCITGGEPLLQPDIEDFIRAVKALGYAVKLDTNGS 102


>gi|254417247|ref|ZP_05030991.1| pyruvate formate-lyase 1-activating enzyme [Microcoleus
           chthonoplastes PCC 7420]
 gi|196175900|gb|EDX70920.1| pyruvate formate-lyase 1-activating enzyme [Microcoleus
           chthonoplastes PCC 7420]
          Length = 257

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 47/135 (34%), Gaps = 35/135 (25%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C +C   D+  +     +G    VD+L   I +   
Sbjct: 35  IRFVIFTQGCPL-----------RCLYCHNPDSRCIR----EGQEVTVDELMTQIPKYRS 79

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWI 131
                G    +TGGEPL+Q +    + +    +G   A++T+G             +D +
Sbjct: 80  YMRFSGGGVTITGGEPLMQPEFVREIFRRCQDQGIHTALDTSGYVNLDVAKPVLDHVDLV 139

Query: 132 -----CVSPKAGCDL 141
                   PK    +
Sbjct: 140 LLDIKSFDPKIYFKI 154


>gi|169342629|ref|ZP_02863673.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens C
           str. JGS1495]
 gi|169299271|gb|EDS81340.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens C
           str. JGS1495]
          Length = 235

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 45/133 (33%), Gaps = 29/133 (21%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C FC   DT        KG  Y  ++L + I     
Sbjct: 20  IRFVVFMQGC-----------GIRCAFCHNPDT----WCKDKGTEYTPEELVNKITRFKT 64

Query: 80  TGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGT-----IEPPQGIDWIC 132
                G     +GGEPLLQ +  L  ++   K G    ++T G       E  + +D I 
Sbjct: 65  YFNASGGGVTFSGGEPLLQPEFLLECLKLCKKEGIHTTLDTAGVGLGNYEEILEYVDLIL 124

Query: 133 VSPKAGCDLKIKG 145
              K     K K 
Sbjct: 125 FDVKEIDPEKYKN 137


>gi|320527904|ref|ZP_08029071.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Solobacterium moorei F0204]
 gi|320131700|gb|EFW24263.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Solobacterium moorei F0204]
          Length = 383

 Score = 58.1 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 16/94 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            +GCN+           +C FC+   +     K      +++   + ++    +      
Sbjct: 172 TAGCNM-----------KCPFCNQKDLVFIPEKYRYIAPEEILSYLNQRSGLLDG----V 216

Query: 89  VLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGT 121
           V++GGEPLLQ   +P I+ + + G+ + ++TNGT
Sbjct: 217 VISGGEPLLQEELIPFIRQIKELGYAVKLDTNGT 250


>gi|223986638|ref|ZP_03636631.1| hypothetical protein HOLDEFILI_03953 [Holdemania filiformis DSM
           12042]
 gi|223961386|gb|EEF65905.1| hypothetical protein HOLDEFILI_03953 [Holdemania filiformis DSM
           12042]
          Length = 143

 Score = 58.1 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 27/125 (21%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
           E F T+ G G    R+ VF    GC +           +CR+C   DT     +   G  
Sbjct: 10  ESFGTVDGPGV---RLVVFV--QGCPM-----------RCRYCHNPDT----WRSEGGQT 49

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
            +  ++    +         G    ++GGEPL Q+     L  A  + G    ++T+G +
Sbjct: 50  MSAAEILQTYKRN--EAFYRGGGITVSGGEPLGQLKFVTELFAAAKQAGIHTCLDTSGIL 107

Query: 123 EPPQG 127
             P  
Sbjct: 108 FDPSH 112


>gi|150391318|ref|YP_001321367.1| radical SAM domain-containing protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149951180|gb|ABR49708.1| Radical SAM domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 242

 Score = 57.7 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 27/147 (18%)

Query: 3   LYSIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGI 57
              + EI  F  + G G      ++F    GCNL            C +C   +T  +  
Sbjct: 7   TLPVNEIIPFSNVDGRGNRT---SIFV--QGCNL-----------NCVYCHNPETIKLPC 50

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIA 115
           + T+   Y + +L  +I++         R   ++GGE  L       L   + K G    
Sbjct: 51  EETQETNYTIKELLSIIKKYGP----YIRGITVSGGEATLYSTYLTQLFGEVKKLGLTCY 106

Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLK 142
           ++TNG     +    I ++ K   D+K
Sbjct: 107 IDTNGLFNLEKMEALIPITDKFLFDIK 133


>gi|253571676|ref|ZP_04849082.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 1_1_6]
 gi|251838884|gb|EES66969.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 1_1_6]
          Length = 232

 Score = 57.7 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GCN            +C +C   DT    I G  G     +++
Sbjct: 2   GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IAGKGGTPTPPEEI 44

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K G     +GGEP  Q    VPL++ L ++G  + +++NG + 
Sbjct: 45  VRMAMSQRPFFGKRGG-ITFSGGEPTFQAKALVPLVRELKEKGIHVCLDSNGGLW 98


>gi|295089884|emb|CBK75991.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium cf. saccharolyticum K10]
          Length = 231

 Score = 57.7 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 32/126 (25%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
            +F  F GCN            +C FC   D     + G     ++ + +   ++++   
Sbjct: 21  TIF--FGGCNF-----------RCPFCHNGD----LVNGPWEDPFDPEDVLAFLKKRSGL 63

Query: 81  GEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQG-------IDWIC 132
            E       +TGGEP LQ D+  LI ++   G  + ++TNG              ID++ 
Sbjct: 64  LEG----VCITGGEPTLQPDLEKLIHSIRSLGLSVKLDTNGYRPDVLKDLCRRGLIDYVA 119

Query: 133 VSPKAG 138
           +  KAG
Sbjct: 120 MDIKAG 125


>gi|331269973|ref|YP_004396465.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum
           BKT015925]
 gi|329126523|gb|AEB76468.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum
           BKT015925]
          Length = 239

 Score = 57.7 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 23/101 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC L           +C FC   DT         G   + + L   I       
Sbjct: 28  VF--FQGCPL-----------RCSFCHNPDT----WDFNGGYEISPEDLVKKIIRFKPYF 70

Query: 82  EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120
           +  G     +GGEPL+Q    L  ++   +     A++T+G
Sbjct: 71  KNNGG-VTFSGGEPLMQPKFLLEALKLCKENNIHTAIDTSG 110


>gi|298384455|ref|ZP_06994015.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 1_1_14]
 gi|298262734|gb|EFI05598.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 1_1_14]
          Length = 232

 Score = 57.7 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 26/115 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GCN            +C +C   DT    I G  G     +++
Sbjct: 2   GTFDGPGLRLVVF--LQGCNF-----------RCLYCANPDT----IAGKGGTPTPPEEI 44

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K G     +GGEP  Q    VPL++ L ++G  + +++NG + 
Sbjct: 45  VRMAMSQRPFFGKRGG-ITFSGGEPTFQAKALVPLVRELKEKGIHVCLDSNGGLW 98


>gi|260892784|ref|YP_003238881.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Ammonifex degensii KC4]
 gi|260864925|gb|ACX52031.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Ammonifex degensii KC4]
          Length = 208

 Score = 57.7 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 20/106 (18%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G+ A  VF R  GCN            +C +C             RY  +     +    
Sbjct: 16  GKPAAVVFTR--GCNF-----------RCPWC----HNPGLVDPARYVPEVPLGEVLGFL 58

Query: 79  ITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123
               K     V++GGEP +Q   VP ++AL   G+ + ++TNG+  
Sbjct: 59  ERRRKYLDAVVVSGGEPTVQGDLVPFLRALKGMGYLVKLDTNGSNP 104


>gi|237749263|ref|ZP_04579743.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
           OXCC13]
 gi|229380625|gb|EEO30716.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
           OXCC13]
          Length = 227

 Score = 57.7 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 30/139 (21%)

Query: 10  FLTLQGEGGHAGRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           F T+       GR+A  +FC   GC             +CR+C    +   G  G +Y+ 
Sbjct: 17  FTTID----FPGRLAAVIFC--QGCP-----------WRCRYCHNRHLLESGEAG-QYSW 58

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE--- 123
           +     +E +    +      V +GGEPLLQ  +P  I  +++ GFE+A+ T+G      
Sbjct: 59  NDTFRWLETRRGLLDG----VVFSGGEPLLQKQLPEAIGQIHQNGFEVALHTSGVYPERL 114

Query: 124 --PPQGIDWICVSPKAGCD 140
                 I+W+ +  KA  D
Sbjct: 115 SKVLPLIEWVGLDIKAPFD 133


>gi|317128688|ref|YP_004094970.1| (formate-C-acetyltransferase)-activating enzyme [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473636|gb|ADU30239.1| (Formate-C-acetyltransferase)-activating enzyme [Bacillus
           cellulosilyticus DSM 2522]
          Length = 245

 Score = 57.7 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
             GC L            C+FC   DT         G +     + ++I         + 
Sbjct: 25  LQGCPLM-----------CQFCNNPDTWHKRSGLYIGSKLM---INEIINYTPYMRTIKN 70

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143
              V++GGEPL+Q +    L++   K G +  + T+G++ P    + I V+     ++K 
Sbjct: 71  SGVVISGGEPLMQPEFTYALLKQCKKLGLKTTLITSGSLIPNNINEIIDVTDLVILNIKH 130

Query: 144 KGGQELKLVFPQVN---VSPENYIGFDFERFSLQPMDGPFLEENTN 186
              QE  L+    N   +    Y+  + +   L+ +  P +  N  
Sbjct: 131 MNEQEHILLTGHSNRNTIKLAKYLHSESKEMWLRHILLPSVTNNVA 176


>gi|229918072|ref|YP_002886718.1| pyruvate formate-lyase activating enzyme [Exiguobacterium sp. AT1b]
 gi|229469501|gb|ACQ71273.1| pyruvate formate-lyase activating enzyme [Exiguobacterium sp. AT1b]
          Length = 238

 Score = 57.7 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 29/134 (21%)

Query: 1   MKLYSI--KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDF 54
           M +  +   E F T+ G G        VF    GC           + +C +C   DT  
Sbjct: 1   MTMGYVHSVESFGTVDGPGIRFI----VF--LQGC-----------ALRCLYCHNADT-- 41

Query: 55  VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGF 112
                 K    + + +           E       ++GG+PL Q      L++   K G 
Sbjct: 42  --WDFKKNNHRSAEDVIQEALSYRPFMEASKGGITISGGDPLAQPEFLEALLREAKKHGL 99

Query: 113 EIAVETNGTIEPPQ 126
              ++T+G + PP 
Sbjct: 100 HTTLDTSGALRPPN 113


>gi|167748358|ref|ZP_02420485.1| hypothetical protein ANACAC_03102 [Anaerostipes caccae DSM 14662]
 gi|317472105|ref|ZP_07931437.1| pyruvate formate-lyase 1-activating enzyme [Anaerostipes sp.
           3_2_56FAA]
 gi|167652350|gb|EDR96479.1| hypothetical protein ANACAC_03102 [Anaerostipes caccae DSM 14662]
 gi|316900509|gb|EFV22491.1| pyruvate formate-lyase 1-activating enzyme [Anaerostipes sp.
           3_2_56FAA]
          Length = 241

 Score = 57.7 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 23/104 (22%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R  VF  F GC           + +C+FC   DT     +   G     + L   I    
Sbjct: 21  RSVVF--FQGC-----------ALRCKFCHNPDT----WEFQGGEEMTPEALVKRISRFK 63

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120
               K+      +GGEPL+Q +  L  ++   + G    ++T G
Sbjct: 64  PY-FKQNGGVTFSGGEPLMQPEFLLKTLKLCKQEGIHTCIDTAG 106


>gi|257452751|ref|ZP_05618050.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 3_1_5R]
 gi|257466612|ref|ZP_05630923.1| pyruvate formate-lyase activating enzyme [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917767|ref|ZP_07914007.1| pyruvate formate-lyase activating enzyme [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|317059292|ref|ZP_07923777.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 3_1_5R]
 gi|313684968|gb|EFS21803.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 3_1_5R]
 gi|313691642|gb|EFS28477.1| pyruvate formate-lyase activating enzyme [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 241

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 59/180 (32%), Gaps = 54/180 (30%)

Query: 1   MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDF 54
           MK Y I   E F T  G G          RF     GC L           +CR+C    
Sbjct: 1   MKAY-INSFESFGTKDGPG---------IRFVLFLQGCPL-----------RCRYCHNVD 39

Query: 55  VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGF 112
                     Y  +++ + +    +          ++GGEPLLQ D      Q  +K G 
Sbjct: 40  AWNLQHPNYIYTSEEILEEVNRVKVFLTGG---ITISGGEPLLQADFVKEFFQLCHKNGI 96

Query: 113 EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
             A++T+G                          +++K V  + ++   +    D E++ 
Sbjct: 97  HTALDTSG----------------------YIFTEKVKEVLEETDLVLLDLKHIDSEKYY 134


>gi|189347395|ref|YP_001943924.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
 gi|189341542|gb|ACD90945.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
          Length = 364

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 14/98 (14%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL            C + D  + G +G +    +      +I E    G    R   L
Sbjct: 22  GCNLKC--------RHC-WIDPKYQG-EGEQHPSLDPSLFRKIIREAIPLGLTSVR---L 68

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127
           TGGEPLL   +  L+  + + G +++VETNG +  PQ 
Sbjct: 69  TGGEPLLHPAIGELLDCIGENGLQLSVETNGLLCSPQT 106


>gi|160946256|ref|ZP_02093467.1| hypothetical protein PEPMIC_00218 [Parvimonas micra ATCC 33270]
 gi|158447779|gb|EDP24774.1| hypothetical protein PEPMIC_00218 [Parvimonas micra ATCC 33270]
          Length = 242

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 22/105 (20%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           G   +F    GC L           +C +C   DT  +      G     D +     E+
Sbjct: 19  GIRTIFF-LQGCPL-----------RCLYCHNPDTQALQ----GGTEITPDFVLSK-AER 61

Query: 78  WITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
           + T  ++      +GGEPLLQ       ++ L + G+   ++T+G
Sbjct: 62  YKTYYRDNGGVTFSGGEPLLQGEFLAETLKLLKENGYNTCIDTSG 106


>gi|160892066|ref|ZP_02073069.1| hypothetical protein BACUNI_04527 [Bacteroides uniformis ATCC 8492]
 gi|270296322|ref|ZP_06202522.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. D20]
 gi|317480485|ref|ZP_07939578.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 4_1_36]
 gi|156858544|gb|EDO51975.1| hypothetical protein BACUNI_04527 [Bacteroides uniformis ATCC 8492]
 gi|270273726|gb|EFA19588.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. D20]
 gi|316903330|gb|EFV25191.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 4_1_36]
          Length = 241

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 26/115 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GC             +C +C   DT    I    G     +++
Sbjct: 11  GTFDGPGLRLVVF--LQGCPF-----------RCLYCANPDT----IDVKGGTPTTPEEI 53

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K+G     +GGEP LQ    +PL + L   G  I +++NG I 
Sbjct: 54  LQMAISQKAFFGKKGG-ITFSGGEPTLQAEALIPLFKELKANGIHICLDSNGGIW 107


>gi|154151136|ref|YP_001404754.1| radical SAM domain-containing protein [Candidatus Methanoregula
           boonei 6A8]
 gi|153999688|gb|ABS56111.1| Radical SAM domain protein [Methanoregula boonei 6A8]
          Length = 270

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 24/110 (21%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            VF R  GC L           +C +C    +          + D++ DLI+   I    
Sbjct: 30  TVFFR--GCPL-----------RCSYCQNAAILAGE---DLRDTDEIIDLIQGSKIAASG 73

Query: 84  EGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTIEPPQGIDWI 131
                V +GGEP +Q D  L+  +A  K G  + ++TNG    P  ID +
Sbjct: 74  ----VVFSGGEPTMQKDALLVLARAAKKFGLAVGIQTNGLF--PDTIDVL 117


>gi|283796877|ref|ZP_06346030.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium sp. M62/1]
 gi|291075285|gb|EFE12649.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium sp. M62/1]
          Length = 231

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 32/126 (25%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
            +F    GCN            +C FC   D     + G     ++ + +   ++++   
Sbjct: 21  TIF--LGGCNF-----------RCPFCHNGD----LVNGPWEDPFDPEDVLAFLKKRSGL 63

Query: 81  GEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQG-------IDWIC 132
            E       +TGGEP LQ D+  LI ++   G  + ++TNG              ID++ 
Sbjct: 64  LEG----VCITGGEPTLQPDLEKLIHSIRSLGLSVKLDTNGYRPDVLKDLCRRGLIDYVA 119

Query: 133 VSPKAG 138
           +  KAG
Sbjct: 120 MDIKAG 125


>gi|297571030|ref|YP_003696804.1| pyruvate formate-lyase activating enzyme [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931377|gb|ADH92185.1| pyruvate formate-lyase activating enzyme [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 308

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 28/135 (20%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+  F  F+GC L           +C +C   DT    ++  +G       + + I    
Sbjct: 86  RLTTF--FAGCPL-----------RCLYCHNPDT----LKMKEGTAVRATDMLEKIARYK 128

Query: 79  ITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG------TIEPPQGIDW 130
                       +GGEP++Q      L+    + G   AV+T+G      T E    +D 
Sbjct: 129 AVFTVSKGGVTFSGGEPMMQPKFLARLLAGCKEIGIHTAVDTSGFLGVNMTEEMLANVDL 188

Query: 131 ICVSPKAGCDLKIKG 145
             +  K+G   + K 
Sbjct: 189 FLLDVKSGVPEQYKR 203


>gi|150015896|ref|YP_001308150.1| pyruvate formate-lyase activating enzyme [Clostridium beijerinckii
           NCIMB 8052]
 gi|149902361|gb|ABR33194.1| pyruvate formate-lyase activating enzyme [Clostridium beijerinckii
           NCIMB 8052]
          Length = 241

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC           + +C++C   DT         G  Y  +QL + IE      
Sbjct: 24  VF--LQGC-----------ALRCKYCHNPDT----WATNGGEEYTPEQLVNKIERFKTYF 66

Query: 82  EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120
              G     +GGEPL Q +  L  ++    +G    ++T G
Sbjct: 67  ASSGGGVTFSGGEPLRQPEFLLETLKLCKSKGINTCIDTAG 107


>gi|330508293|ref|YP_004384721.1| putative molybdenum cofactor biosynthesis protein A [Methanosaeta
           concilii GP-6]
 gi|328929101|gb|AEB68903.1| probable molybdenum cofactor biosynthesis protein A [Methanosaeta
           concilii GP-6]
          Length = 307

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 70/192 (36%), Gaps = 36/192 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C       +   GG    D +  + +     G    R   LT
Sbjct: 20  CNL-----------KCIYC---HHEGELLPGGEIPGDMVVSIAKAAAELGM---RSVKLT 62

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETNG-------TIEPPQGIDWICVS-----PKAGC 139
           GGEPLL+ D+ LI A   +  +I++ TNG             G+D + VS     P   C
Sbjct: 63  GGEPLLRKDLDLIIARIPQSLDISITTNGILLAERAEALARAGLDRVNVSLDSLQPNRYC 122

Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199
            +      +L+ V   ++ S E     D     L  +     E      I +C +     
Sbjct: 123 QITGGSPGDLEKVLAGIDASREA----DLLPIKLNFVVLKRNESEVPEMIDFCRRRG--- 175

Query: 200 LSVQTHKFIGIR 211
           L +Q  + + I+
Sbjct: 176 LILQLIELLDIQ 187


>gi|327399300|ref|YP_004340169.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Hippea maritima DSM 10411]
 gi|327181929|gb|AEA34110.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Hippea maritima DSM 10411]
          Length = 227

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 27/138 (19%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCN            +C +C       +   G    +D+    I       + +     +
Sbjct: 25  GCNF-----------RCPYC----HNPELIDGTSARIDE--GEILSFLEKRKGKLTAVSI 67

Query: 91  TGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVSPKAGCDL 141
           TGGEP L  D     IQ L K G+++ ++TNGT             +D+I +  KA  + 
Sbjct: 68  TGGEPTLHKDRLFKFIQKLKKLGYKVKLDTNGTNPEIISKLLNSNLLDYIAMDVKAPLE- 126

Query: 142 KIKGGQELKLVFPQVNVS 159
           K     ++K+    +  S
Sbjct: 127 KYSDVVDVKVNIEAIKTS 144


>gi|325679452|ref|ZP_08159034.1| pyruvate formate-lyase 1-activating enzyme [Ruminococcus albus 8]
 gi|324108851|gb|EGC03085.1| pyruvate formate-lyase 1-activating enzyme [Ruminococcus albus 8]
          Length = 249

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 29/120 (24%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        +F  F GC +           +C +C   DT     +   G
Sbjct: 8   TESFSSVDGPGNRFV----IF--FQGCPM-----------RCLYCHNPDT----WEVNGG 46

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
                ++L D  +      +  G     TGGEP LQ+     L +    RG    ++T G
Sbjct: 47  REVTAEELLDEFDSVKEFLKGGG--ITCTGGEPCLQMGFLTELFEKAKARGINTCLDTCG 104


>gi|224541068|ref|ZP_03681607.1| hypothetical protein CATMIT_00219 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525992|gb|EEF95097.1| hypothetical protein CATMIT_00219 [Catenibacterium mitsuokai DSM
           15897]
          Length = 381

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 27/153 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
             GCN            +C FC    +            + + + +E++    E      
Sbjct: 171 TGGCNF-----------KCPFCHNSDLVFLPENMVEIEQEDVLEFLEKRKNILEG----V 215

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVS----PK 136
            +TGGEPLLQ  +   ++ +   G+ I ++TNG+             +D++ V     PK
Sbjct: 216 CITGGEPLLQAGIVDFLRVIKDMGYSIKLDTNGSFPNKLKELVEDGLVDYVAVDIKNAPK 275

Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
                    G  L  +   V    EN++ ++F 
Sbjct: 276 KYNKTIGLEGYRLDSIKTTVQYLLENHVDYEFR 308


>gi|154505214|ref|ZP_02041952.1| hypothetical protein RUMGNA_02727 [Ruminococcus gnavus ATCC 29149]
 gi|153794412|gb|EDN76832.1| hypothetical protein RUMGNA_02727 [Ruminococcus gnavus ATCC 29149]
          Length = 230

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 71/219 (32%), Gaps = 61/219 (27%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY-----C 88
           +       R + +C FC                    A  I E+ +      R       
Sbjct: 18  VACTIFTARCNFRCPFC---------HNASLVTHVDAAAAISEEEVFSFLAKRQGILDGV 68

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT-------IEPPQGIDWICVS-----P 135
            +TGGEPLLQ D+   I+ + + G+++ ++TNG+       +     +D++ +       
Sbjct: 69  CITGGEPLLQPDIEEFIRKVKELGYQVKLDTNGSNVLRLRRLVEQGLVDYVAMDIKNAPD 128

Query: 136 KAGCDLKIKGGQ------------------ELKLVFPQVNVSPENYIGF-----DFERFS 172
           K G  + I+                     E +    +     E++          +++ 
Sbjct: 129 KYGMTIGIEEYDMSNIFQSVDFLMSGDVPYEFRTTVVRQFHKREDFAAIGRWIKGAKQYY 188

Query: 173 LQ----------PMDGPFLEENTNLAISYCFQN-PKWRL 200
           LQ          P    + +E    A+    +N P  +L
Sbjct: 189 LQSFVDSGDLICPGMKGYTKEIMEQALEIVKRNIPNAKL 227


>gi|226323711|ref|ZP_03799229.1| hypothetical protein COPCOM_01486 [Coprococcus comes ATCC 27758]
 gi|225207895|gb|EEG90249.1| hypothetical protein COPCOM_01486 [Coprococcus comes ATCC 27758]
          Length = 247

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 25/120 (20%)

Query: 7   KEIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        +F    GC L           +C+FC   DT +        
Sbjct: 11  TESFGSVDGPGVRFI----IFV--QGCPL-----------RCQFCHNPDT-WNMTDKNGA 52

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
              + D+L       + T  K G    ++GGEPLLQ+D  + L +    +G    ++T G
Sbjct: 53  TWRSADELLAQALR-YRTYWKNGGGITVSGGEPLLQIDFLLDLFKKAKAKGIHTTIDTAG 111


>gi|325663171|ref|ZP_08151621.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|331086761|ref|ZP_08335838.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|325470625|gb|EGC73855.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|330409927|gb|EGG89362.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 257

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 31/158 (19%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC +           +C +C   DT     +   G + +V+++ +         
Sbjct: 24  IF--LQGCPM-----------RCLYCHNPDT----WEPNIGEQQSVEEVLEGFYSNLP-- 64

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGI-------DWIC 132
                   +TGGEP++Q+D  + L   L K      ++T+G +  P            + 
Sbjct: 65  FYRHGGVTVTGGEPMMQMDFLIELFTKLKKDHIHTCIDTSGIMFQPSNAVFMEKLEKLLQ 124

Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
           V+     D+K   G+E K +    N     +  +  E+
Sbjct: 125 VTDLIMLDIKHINGEEHKKLTAHSNERILAFARYLDEQ 162


>gi|154493910|ref|ZP_02033230.1| hypothetical protein PARMER_03254 [Parabacteroides merdae ATCC
           43184]
 gi|154086170|gb|EDN85215.1| hypothetical protein PARMER_03254 [Parabacteroides merdae ATCC
           43184]
          Length = 240

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 54/159 (33%), Gaps = 39/159 (24%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F T+ G G          RF     GC L           +C +C   DT  V  +  
Sbjct: 9   ESFGTVDGPG---------IRFVVFMQGCPL-----------RCLYCHNPDTWEVKRETP 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
                  + L   +        K G    +TGGEPLLQ +      +   + G   A++T
Sbjct: 49  Y--LLEPEALLAEVLRYKNFIAKGG--VTVTGGEPLLQPEFLKEFFRLCRENGIHTALDT 104

Query: 119 NG------TIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151
           +G       +E  + +D + +  K            +KL
Sbjct: 105 SGYICSGKALEVLEQVDLVLLDIKTIDAGLHPRLTAVKL 143


>gi|224367599|ref|YP_002601762.1| PflA [Desulfobacterium autotrophicum HRM2]
 gi|223690315|gb|ACN13598.1| PflA [Desulfobacterium autotrophicum HRM2]
          Length = 235

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 67/182 (36%), Gaps = 39/182 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           VF   +GCN             C +C      D          G     +++   + ++ 
Sbjct: 22  VF--TTGCNFV-----------CPYCHNPDLVDQAKSREIKPIGK----EEIFAFLNKRQ 64

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPP-------QGIDW 130
              +      V+TGGEP LQ D+   I+ +   GF + ++TNG+             +D+
Sbjct: 65  GLIDG----VVITGGEPTLQPDLAQFIRDIKALGFRVKLDTNGSRPEIIKSLLEKGLVDY 120

Query: 131 ICVSPKAGCDLKIKGGQ---ELKLVFPQVNVSPENYIGFDFERFSLQP-MDGPFLEENTN 186
           I +  K+  D          ++K V   + +       ++F    ++P +D   +E+   
Sbjct: 121 IAMDIKSNLDGYYLAAGRRFDVKTVSAAIKIIMAQAPAYEFRTTCVKPLIDQQKMEDIGA 180

Query: 187 LA 188
           + 
Sbjct: 181 MI 182


>gi|317055864|ref|YP_004104331.1| pyruvate formate-lyase activating enzyme [Ruminococcus albus 7]
 gi|315448133|gb|ADU21697.1| pyruvate formate-lyase activating enzyme [Ruminococcus albus 7]
          Length = 248

 Score = 57.0 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 35/123 (28%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        +F  F GC +           +C +C   DT     Q   G
Sbjct: 8   VESFSSVDGPGNRFV----IF--FQGCPM-----------RCLYCHNPDT----WQTDGG 46

Query: 63  GRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVE 117
                ++L    D ++E    G         TGGEP LQ+     L +    RG    ++
Sbjct: 47  REVTAEKLLGEYDSVKEFLKGGG-----ITCTGGEPCLQIGFLTELFEKAKSRGINTCLD 101

Query: 118 TNG 120
           T+G
Sbjct: 102 TSG 104


>gi|329961315|ref|ZP_08299461.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides fluxus YIT
           12057]
 gi|328531921|gb|EGF58741.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides fluxus YIT
           12057]
          Length = 232

 Score = 57.0 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 26/115 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GC             +C +C   DT    I    G   + D++
Sbjct: 2   GTFDGPGLRLVVF--LQGCPF-----------RCLYCANPDT----IDVKGGIPTSPDEI 44

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K+G     +GGEP LQ    +PL + L   G  I +++NG I 
Sbjct: 45  LQMAISQKAFFGKKGG-ITFSGGEPTLQAEALIPLFKELKANGIHICLDSNGGIW 98


>gi|254459192|ref|ZP_05072614.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Campylobacterales bacterium GD 1]
 gi|207084085|gb|EDZ61375.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Campylobacterales bacterium GD 1]
          Length = 234

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 17/94 (18%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           FSGCN+           +C +C    +    +  G Y +D++ + +  +    E      
Sbjct: 37  FSGCNM-----------RCDYCYNKAIVF--SNSGSYTIDEVLEFLHSRVNLLEA----V 79

Query: 89  VLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           VL+GGE      V   +A+ K GF+I ++TNGT 
Sbjct: 80  VLSGGEASSHDLVEFCKAVKKLGFKIKLDTNGTY 113


>gi|269794948|ref|YP_003314403.1| pyruvate formate-lyase 1-activating enzyme [Sanguibacter keddieii
           DSM 10542]
 gi|269097133|gb|ACZ21569.1| pyruvate formate-lyase 1-activating enzyme [Sanguibacter keddieii
           DSM 10542]
          Length = 287

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 28/128 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF  F+GC L           +C +C   DT    ++   G     D+L   I    
Sbjct: 66  RMTVF--FAGCPL-----------RCLYCHNPDT----MKMKDGESVTSDELLRRIRRYK 108

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130
                 G    ++GGE L+Q      ++      G    ++T+G      T E  + +D 
Sbjct: 109 AVFRSTGGGLTISGGEVLMQPAFAATILAGAKAEGIHTTIDTSGYLGASCTDEMLEDVDL 168

Query: 131 ICVSPKAG 138
           + +  K+G
Sbjct: 169 VLLDVKSG 176


>gi|154496635|ref|ZP_02035331.1| hypothetical protein BACCAP_00927 [Bacteroides capillosus ATCC
           29799]
 gi|150274268|gb|EDN01359.1| hypothetical protein BACCAP_00927 [Bacteroides capillosus ATCC
           29799]
          Length = 242

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 19/103 (18%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE--KEGR 86
             GCNL            C +C       +G       V  + D++ E   +     +G 
Sbjct: 25  LQGCNL-----------HCPWC----SNPEGMTFCGGTVCSVEDIVAEVLRSRPMFFDGG 69

Query: 87  YCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQG 127
              LTGGE  +Q      L+  L+  G   A+E+NGT      
Sbjct: 70  GVTLTGGEAAMQPQAVKELLSVLSGHGIHTALESNGTAPLLST 112


>gi|218961545|ref|YP_001741320.1| putative anaerobic ribonucleotide reductase activating enzyme
           (NrdG) [Candidatus Cloacamonas acidaminovorans]
 gi|167730202|emb|CAO81114.1| putative anaerobic ribonucleotide reductase activating enzyme
           (NrdG) [Candidatus Cloacamonas acidaminovorans]
          Length = 237

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 18/100 (18%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF    GCN            +C +C       +     RY+     + +        K+
Sbjct: 22  VF--TQGCNF-----------RCPYC----HNPELVDPQRYSPLLETEKVLRFLYRRHKK 64

Query: 85  GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
               V+TGGEP LQ D+ P ++      ++I ++TNG+  
Sbjct: 65  LSAVVVTGGEPTLQEDLIPFLKLTKAMRYKIKLDTNGSRP 104


>gi|260655537|ref|ZP_05861025.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Jonquetella anthropi E3_33 E1]
 gi|260629985|gb|EEX48179.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Jonquetella anthropi E3_33 E1]
          Length = 229

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 43/160 (26%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
             VF    GCN            +C +C                VDQ +DL++E+     
Sbjct: 20  ATVF--TLGCNF-----------RCPWC-----------HNGPLVDQSSDLLDEEDFFSF 55

Query: 83  KEGRY-----CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-------PQGID 129
              R       V+TGGEP +  D+P  I  +   G ++ ++TNG+           + +D
Sbjct: 56  LASRKRLLDGVVVTGGEPTIHRDLPEFILRIKDMGLKVKLDTNGSHPAMMADLIDKKLVD 115

Query: 130 WICVSPKAG-CDLKIKGG-----QELKLVFPQVNVSPENY 163
           +I +  KA     ++  G     + L+    Q    P  +
Sbjct: 116 YIAMDVKAAPSAYRLAAGTTVQLETLRQAIEQTRRLPHEF 155


>gi|327398449|ref|YP_004339318.1| Radical SAM domain-containing protein [Hippea maritima DSM 10411]
 gi|327181078|gb|AEA33259.1| Radical SAM domain protein [Hippea maritima DSM 10411]
          Length = 351

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 25/111 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL     +   S                   R + + + ++IEE     E+     VLT
Sbjct: 16  CNLNCIHCRTSASMN--------------LEDRLSFEDITNIIEE---ISEQFKPVVVLT 58

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGT-------IEPPQGIDWICVS 134
           GGEPLL+ DV  +   ++ +G  + + TNGT       ++  + ID + +S
Sbjct: 59  GGEPLLREDVFDIADFIHSKGMRVGLATNGTLIDEGLALKIKKHIDIVSLS 109


>gi|84490213|ref|YP_448445.1| hypothetical protein Msp_1431 [Methanosphaera stadtmanae DSM 3091]
 gi|84373532|gb|ABC57802.1| partially conserved hypothetical protein [Methanosphaera stadtmanae
           DSM 3091]
          Length = 183

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 63/186 (33%), Gaps = 40/186 (21%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           G  Y+ DQL + I++       +     +TGGEPLL  D      L K  ++  +ETN T
Sbjct: 2   GKEYSYDQLNEEIQKLM---TPDFDSLEITGGEPLLHSDYIH-DFLKKYPYKAMLETNAT 57

Query: 122 IEPPQG-----IDWICVSPKAGCDLKIKGG------QELK----------------LVFP 154
                      ID + +  K       K         ELK                +V P
Sbjct: 58  KPIELDNLNDVIDIVSMDIKLPEHFNSKDEWIEVYENELKSIEVMQLNNQKYYIKIVVSP 117

Query: 155 QVNVSPENYIGFDFERFS---------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205
              ++  N I  D    S         + PM+    ++N         +N    +  Q H
Sbjct: 118 TTPINVINKIMKDINDISKEVEIIIQPVSPMELWDKKDNLFKISEIIGKNHSVSIIPQIH 177

Query: 206 KFIGIR 211
           K++ + 
Sbjct: 178 KYLNVE 183


>gi|289667004|ref|ZP_06488079.1| putative radical activating enzyme [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 136

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 33/131 (25%)

Query: 103 LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAG--CDLKIK-GGQELKLVFPQVNVS 159
           L+Q L   G+++++ET+G ++         V P+     D+K    G+E +  +  + + 
Sbjct: 7   LLQKLCDAGYDVSLETSGALDVSA------VDPRVSRVVDIKTPASGEEARNRWENLPLL 60

Query: 160 PE-NYIGF------DFE---------------RFSLQPMDGPFLEENTNLAISYCFQNPK 197
              + I F      D+E                    P           LA         
Sbjct: 61  TARDQIKFVICSRADYEWSREIVAAQALDRRCTVWFSPSKSEVSPR--QLADWIVADRLP 118

Query: 198 WRLSVQTHKFI 208
            R  +Q HK +
Sbjct: 119 VRFQMQLHKLL 129


>gi|154504499|ref|ZP_02041237.1| hypothetical protein RUMGNA_02003 [Ruminococcus gnavus ATCC 29149]
 gi|153794981|gb|EDN77401.1| hypothetical protein RUMGNA_02003 [Ruminococcus gnavus ATCC 29149]
          Length = 257

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 41/134 (30%)

Query: 1   MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---D 51
           MK Y I   E F ++ G G          RF    SGC +           +C+FC   D
Sbjct: 16  MKGY-IHSTESFGSVDGPG---------VRFLIFVSGCPM-----------RCQFCHNPD 54

Query: 52  TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVD--VPLIQAL 107
           T         G + + D+L D   + W      G+     ++GGEPLLQ+D  + L +  
Sbjct: 55  T----WSMKTGTQMSADELLD---KAWKYRSYWGKSGGITVSGGEPLLQIDFLLELFKKA 107

Query: 108 NKRGFEIAVETNGT 121
            ++G    ++T+G 
Sbjct: 108 KEKGIHTTIDTSGA 121


>gi|269123081|ref|YP_003305658.1| pyruvate formate-lyase activating enzyme [Streptobacillus
           moniliformis DSM 12112]
 gi|268314407|gb|ACZ00781.1| pyruvate formate-lyase activating enzyme [Streptobacillus
           moniliformis DSM 12112]
          Length = 247

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 25/103 (24%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C +C   DT               +++   I    +
Sbjct: 23  IRFVLFLQGCPL-----------RCLYCHNVDT---WNLKDHKRLMTPEEVFKEI--MKV 66

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
            G  +     ++GGEPLLQ D  + L +   + G    ++T+G
Sbjct: 67  RGFIKTGGVTVSGGEPLLQSDFIIELFKLCKEAGIHTCIDTSG 109


>gi|160880951|ref|YP_001559919.1| pyruvate formate-lyase activating enzyme [Clostridium
           phytofermentans ISDg]
 gi|160429617|gb|ABX43180.1| pyruvate formate-lyase activating enzyme [Clostridium
           phytofermentans ISDg]
          Length = 250

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 29/168 (17%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
            E F T+ G G        VF    GC +           +C++C          +    
Sbjct: 8   TESFGTVDGPGIRFV----VF--LQGCPM-----------RCQYC----HNPDTWELNGG 46

Query: 66  NVDQLADLIEEQWITGEK-EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG-T 121
            +  + D+++E     E  +G    +TGGEPLLQ++    L +   K+G    ++T+G T
Sbjct: 47  TLRSVEDILKEYDSYKEFLKGGGITVTGGEPLLQLEFVTELFEEAKKKGIHTCIDTSGIT 106

Query: 122 IEPPQGIDWIC---VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
             P     ++    V+     D+K     + K +    N +   +  F
Sbjct: 107 FRPADKEKYLPLLKVTDLVMLDIKQMNAIKHKELTGHDNANILEFARF 154


>gi|319901645|ref|YP_004161373.1| pyruvate formate-lyase activating enzyme [Bacteroides helcogenes P
           36-108]
 gi|319416676|gb|ADV43787.1| pyruvate formate-lyase activating enzyme [Bacteroides helcogenes P
           36-108]
          Length = 241

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 26/115 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GC             +C +C   DT    I+   G   + +++
Sbjct: 11  GTFDGPGLRLVVF--LQGCPF-----------RCLYCANPDT----IEIKGGTPTSSEEI 53

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K+G     +GGEP LQ    +PL++ L K G  I +++NG I 
Sbjct: 54  LQMAISQKAFFGKKGG-ITFSGGEPTLQAEALIPLLKDLKKNGIHICLDSNGGIW 107


>gi|317127502|ref|YP_004093784.1| pyruvate formate-lyase activating enzyme [Bacillus cellulosilyticus
           DSM 2522]
 gi|315472450|gb|ADU29053.1| pyruvate formate-lyase activating enzyme [Bacillus cellulosilyticus
           DSM 2522]
          Length = 241

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT        KG    V +L + I++     
Sbjct: 23  IF--TQGC-----------LLRCQYCHNPDT----WDRNKGNEMTVAELIEDIKKYMPYM 65

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           +       ++GGEPLLQ+D  + L +   K G    ++++G
Sbjct: 66  KFSKGGVTVSGGEPLLQMDFLIALFKECKKLGIHTTIDSSG 106


>gi|331092301|ref|ZP_08341129.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330401733|gb|EGG81312.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 252

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 24/107 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC +           +C++C   DT  V      G ++ V ++ +         
Sbjct: 24  VF--LQGCPM-----------RCQYCHNPDTWKVNT----GEQHTVAEVLEGFYTNRPFY 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQ 126
              G    +TGGEP++Q+D  + L   L K G    ++++G +  P+
Sbjct: 67  RNGG--VTVTGGEPMMQMDFLIELFTQLKKDGIHTCIDSSGVMFQPE 111


>gi|302390514|ref|YP_003826335.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermosediminibacter oceani DSM 16646]
 gi|302201142|gb|ADL08712.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermosediminibacter oceani DSM 16646]
          Length = 240

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 30/123 (24%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG--IQGTKGGRYNVDQLADLIEEQWITG 81
            VF    GCN            +C +C     G  + G+  G+       D +E +    
Sbjct: 31  TVF--LPGCNF-----------RCPYC---HNGPLVTGSPKGKVPESVFFDYLERRKKLI 74

Query: 82  EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQG-------IDWICV 133
           +       +TGGEP L  D+P  I  L KRG ++ ++TNG+             +D++ V
Sbjct: 75  DG----VCITGGEPTLWSDLPEFILKLKKRGLKVKLDTNGSRPEVLKELLNKGLLDYVAV 130

Query: 134 SPK 136
             K
Sbjct: 131 DIK 133


>gi|237736323|ref|ZP_04566804.1| pyruvate formate-lyase activating enzyme [Fusobacterium mortiferum
           ATCC 9817]
 gi|229421671|gb|EEO36718.1| pyruvate formate-lyase activating enzyme [Fusobacterium mortiferum
           ATCC 9817]
          Length = 242

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 16/98 (16%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +F    GC L           +C+FC        G K  + + +     I+       K+
Sbjct: 24  IF--LQGCPL-----------RCKFCHNPDTWKIGEKKIQESAEDTLKKIKRYKNYFGKK 70

Query: 85  GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           G    +TGGEPL+Q D  + L +   K G   A++T+G
Sbjct: 71  GG-VTVTGGEPLVQSDYVLELFKLCKKEGIHTALDTSG 107


>gi|225386322|ref|ZP_03756086.1| hypothetical protein CLOSTASPAR_00065 [Clostridium asparagiforme
           DSM 15981]
 gi|225047601|gb|EEG57847.1| hypothetical protein CLOSTASPAR_00065 [Clostridium asparagiforme
           DSM 15981]
          Length = 249

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 63/177 (35%), Gaps = 41/177 (23%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
           E F T+ G G       +F   SGC +           +C +C   DT         G  
Sbjct: 9   ESFGTVDGPGIRM---VIF--LSGCPM-----------RCLYCHNPDT----WDPKGGTP 48

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
             V+QL +  +       K G    ++GGEPL Q+     L +A  KRG    ++T+G  
Sbjct: 49  MTVEQLLNQYDNARHFYRKGG--ITVSGGEPLTQIGFVTELFEAAKKRGIHTCLDTSG-- 104

Query: 123 EPPQGIDWICVSP-KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
                   +   P  AG   K      L  V   V +  ++    +  +   QP D 
Sbjct: 105 --------VTFRPDSAGVREKFDR---LAAVTDLVLLDIKHIDPQEHLKLCGQPQDN 150


>gi|220931944|ref|YP_002508852.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Halothermothrix orenii H 168]
 gi|219993254|gb|ACL69857.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Halothermothrix orenii H 168]
          Length = 231

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 51/123 (41%), Gaps = 26/123 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL-ADLIEEQWITGEK 83
           VF    GCNL           +C +C          K    N+D +  DL+ E     +K
Sbjct: 22  VF--TYGCNL-----------RCPYC----HNSGLVKNNNKNIDFISLDLLFEFLRRRKK 64

Query: 84  EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSP 135
                 +TGGEP LQ    P I+ + K GF+I ++TNGT             ID+I +  
Sbjct: 65  LIDGVCITGGEPTLQTGLEPFIRKIKKMGFKIKLDTNGTKPDLINKLVKENLIDYIAMDI 124

Query: 136 KAG 138
           KA 
Sbjct: 125 KAP 127


>gi|38232995|ref|NP_938762.1| putative oxidoreductase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199253|emb|CAE48884.1| Putative oxidoreductase [Corynebacterium diphtheriae]
          Length = 291

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 31/142 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ +F   SGC L           +C +C   DT    +   +G    V+ +   I+   
Sbjct: 68  RMTMFM--SGCPL-----------RCLYCHNPDT----MGMKEGTVERVESIVKKIKRYR 110

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130
              +  G    ++GGEPL Q+     +++ ++  G    ++T+G      T E  + ID 
Sbjct: 111 NVFKASGGGLTISGGEPLFQIAFTRRVLKEVHDAGIHTTIDTSGYLGARLTDEDLENIDL 170

Query: 131 ICVSPKAGCD---LKIKGGQEL 149
           + +  K+G +    ++ GG+EL
Sbjct: 171 VLLDVKSGDEETYHRVSGGREL 192


>gi|288819035|ref|YP_003433383.1| pyruvate formate-lyase activating enzyme [Hydrogenobacter
           thermophilus TK-6]
 gi|288788435|dbj|BAI70182.1| pyruvate formate-lyase activating enzyme [Hydrogenobacter
           thermophilus TK-6]
 gi|308752618|gb|ADO46101.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Hydrogenobacter thermophilus TK-6]
          Length = 247

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 28/156 (17%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF    GCN            +C +C    + +    G     +++   +E++    E  
Sbjct: 40  VF--TQGCNF-----------RCPYCYNVELVLPEYFGKTIPQEEILSFLEQRVGKLEG- 85

Query: 85  GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSPK 136
               V+TGGEP +   +   I+ + K  F + ++TNG++          + +D+I +  K
Sbjct: 86  ---VVITGGEPTIHAGLKDFIEKVKKPSFSVKLDTNGSMPEVIEELIKDKLVDYIAMDIK 142

Query: 137 AGCD---LKIKGGQELKLVFPQVNVSPENYIGFDFE 169
           A  D     ++   ++K +   +N+   + + ++F 
Sbjct: 143 APPDKYEEVVRAKVDIKAINRSINLIMNSGVDYEFR 178


>gi|257792463|ref|YP_003183069.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Eggerthella lenta DSM 2243]
 gi|317490330|ref|ZP_07948816.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Eggerthella sp. 1_3_56FAA]
 gi|325833502|ref|ZP_08165951.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Eggerthella sp. HGA1]
 gi|257476360|gb|ACV56680.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Eggerthella lenta DSM 2243]
 gi|316910620|gb|EFV32243.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Eggerthella sp. 1_3_56FAA]
 gi|325485426|gb|EGC87895.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Eggerthella sp. HGA1]
          Length = 240

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 25/109 (22%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFC---D--TDFVGIQGTKGGR--YNVDQLADLIE 75
             VF    GCN            +C FC   D  T   G  G        ++D+L   + 
Sbjct: 20  ATVF--TPGCNF-----------RCPFCHNADLVTGEAGRDGAAADSSALSIDELFAFLG 66

Query: 76  EQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
           ++    +       +TGGEPLLQ  +      +++ GF + ++TNG+  
Sbjct: 67  KRQGLLDG----VCITGGEPLLQSGIDEFCTRVHELGFAVKLDTNGSFP 111


>gi|304404568|ref|ZP_07386229.1| pyruvate formate-lyase activating enzyme [Paenibacillus
           curdlanolyticus YK9]
 gi|304346375|gb|EFM12208.1| pyruvate formate-lyase activating enzyme [Paenibacillus
           curdlanolyticus YK9]
          Length = 245

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 64/172 (37%), Gaps = 38/172 (22%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F T+ G G          RF     GC           + QC+FC   DT       
Sbjct: 8   METFGTVDGPG---------IRFVLFMQGC-----------ALQCQFCHNPDT----WDP 43

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-----GFEI 114
             G +  VD++ + IE      +  G    +TGGEP LQ   P +  L K      G   
Sbjct: 44  ATGRQVTVDEILNEIEPYLAYYKGSGGGITVTGGEPTLQA--PFVAQLFKACKERFGLHT 101

Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
           A++++G  +P   ++ +  +     DLK     + + +  Q N     +  +
Sbjct: 102 ALDSSGFCDPSHAVELMTYTDLVLLDLKQMNNAKHERLTSQPNERILAFARW 153


>gi|156937491|ref|YP_001435287.1| radical SAM domain-containing protein [Ignicoccus hospitalis
           KIN4/I]
 gi|156566475|gb|ABU81880.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 352

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 25/165 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA----DLIEEQWITGEKEGRYCVLTGGEPL 96
           +R +  C FC            GR + D+L+    D+I E   T     +Y   TGGEPL
Sbjct: 19  ERCNFNCIFC-------HSEGAGRGSFDELSVNDYDMIAEA--TSRLGLKYVKFTGGEPL 69

Query: 97  LQVDV-PLIQALNKRGF-EIAVETNGTIEP-------PQGIDWICV---SPKAGCDLKIK 144
           L+ D+  +I +  + GF EI++ TNG + P         G+ WI V   S K     +I 
Sbjct: 70  LRSDLEEIIHSFKEHGFEEISITTNGFLLPERTEGLKEAGVSWINVSLHSLKRQRFRRIT 129

Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAI 189
           G   L  V   +  + EN I        L+ ++   +EE    AI
Sbjct: 130 GVDALNRVLNGIEKALENGIEVRVNVVVLRGINEDEVEEIVKYAI 174


>gi|307544227|ref|YP_003896706.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Halomonas elongata DSM 2581]
 gi|307216251|emb|CBV41521.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Halomonas elongata DSM 2581]
          Length = 241

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 30/134 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF    GC L           +C +C       Q     +    + A+ +E         
Sbjct: 32  VF--LQGCPL-----------RCGYC----HNPQMLAPRQAEPSEWAE-VEAFLERRRGL 73

Query: 85  GRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAG 138
               V +GGEP L  D+   I+ ++  GF++ + T G            +DW+      G
Sbjct: 74  LEAVVFSGGEPTLHADLAQAIERVHALGFKVGLHTAGIYPRRLQTLLPRLDWV------G 127

Query: 139 CDLKIKGGQELKLV 152
            D+K  G    ++V
Sbjct: 128 LDVKGPGADFDRIV 141


>gi|225390023|ref|ZP_03759747.1| hypothetical protein CLOSTASPAR_03773 [Clostridium asparagiforme
           DSM 15981]
 gi|225043900|gb|EEG54146.1| hypothetical protein CLOSTASPAR_03773 [Clostridium asparagiforme
           DSM 15981]
          Length = 228

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 19/107 (17%)

Query: 16  EGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE 75
           EG H        RFSGC L     +      C        G  G  G   +  ++   + 
Sbjct: 3   EGAHR------IRFSGCALCGACVE-----ACP------QGALGVYGRERSAGEVVAEVL 45

Query: 76  EQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           + +   E  G    ++GGEP+ Q D    L  AL   G  + +ET+G
Sbjct: 46  KDYDYYEDSGGGVTISGGEPMAQADYARELSGALKGAGLHVCMETSG 92


>gi|284048541|ref|YP_003398880.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Acidaminococcus fermentans DSM 20731]
 gi|283952762|gb|ADB47565.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Acidaminococcus fermentans DSM 20731]
          Length = 236

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 18/96 (18%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
             GCNL           +C +C       +  +G   + D   + +       +      
Sbjct: 24  TGGCNL-----------RCPYC----HNSELLEGEMPSQD--MEEVMAYLDVRKGILDGV 66

Query: 89  VLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123
           V++GGEP LQ   VP +  L ++G  + ++TNG   
Sbjct: 67  VISGGEPCLQSDLVPFLARLKEKGLLVKLDTNGCFP 102


>gi|319893382|ref|YP_004150257.1| Pyruvate formate-lyase activating enzyme [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317163078|gb|ADV06621.1| Pyruvate formate-lyase activating enzyme [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323463552|gb|ADX75705.1| pyruvate formate-lyase-activating enzyme [Staphylococcus
           pseudintermedius ED99]
          Length = 253

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 15/97 (15%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +F    GC             +C +C                 D+L + I       +  
Sbjct: 24  IF--TQGC-----------LLRCLYCHNPDTWKVNEPSRTATADELVNEIVPYLPYFQAS 70

Query: 85  GRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
           G    ++GGEPLLQ+     L + L+ +G    ++T+
Sbjct: 71  GGGVTISGGEPLLQMPFIEELFEKLHAQGIHTCIDTS 107


>gi|300857666|ref|YP_003782649.1| pyruvate formate-lyase activating enzyme [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685120|gb|ADK28042.1| pyruvate formate-lyase activating enzyme [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302205405|gb|ADL09747.1| formate-C-acetyltransferase-activating enzyme [Corynebacterium
           pseudotuberculosis C231]
 gi|302329959|gb|ADL20153.1| Putative oxidoreductase [Corynebacterium pseudotuberculosis 1002]
 gi|308275643|gb|ADO25542.1| pyruvate formate-lyase activating enzyme [Corynebacterium
           pseudotuberculosis I19]
          Length = 289

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 30/141 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ +F   +GC L           +C +C   DT    +Q  KG    V+ +   I+   
Sbjct: 67  RMTMFM--AGCPL-----------RCLYCHNPDT----MQMKKGTLERVEDIIKKIKRYR 109

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130
              +  G    ++GGEPL Q+     +++ ++  G    ++T+G      + E  + ID 
Sbjct: 110 RVFKASGGGLTISGGEPLFQIAFTRRVLKEVHDAGIHTTIDTSGYLGARLSDEDLENIDL 169

Query: 131 ICVSPKAGCDLKIKG--GQEL 149
           + +  KAG +   +   G+EL
Sbjct: 170 VLLDVKAGDEETYRRVTGREL 190


>gi|167762452|ref|ZP_02434579.1| hypothetical protein BACSTE_00807 [Bacteroides stercoris ATCC
           43183]
 gi|167699558|gb|EDS16137.1| hypothetical protein BACSTE_00807 [Bacteroides stercoris ATCC
           43183]
          Length = 232

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 43/115 (37%), Gaps = 26/115 (22%)

Query: 17  GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           G   G   R+ VF    GC             +C +C   DT    I    G      ++
Sbjct: 2   GTFDGPGLRLVVF--LQGCPF-----------RCLYCANPDT----IDVKGGTPTPAGEI 44

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
             +   Q     K+G     +GGEP LQ    +PL + L   G  I ++TNG I 
Sbjct: 45  LQMAVSQKAFFGKKGG-ITFSGGEPTLQAEALIPLFKDLKANGIHICLDTNGGIW 98


>gi|317132608|ref|YP_004091922.1| pyruvate formate-lyase activating enzyme [Ethanoligenens harbinense
           YUAN-3]
 gi|315470587|gb|ADU27191.1| pyruvate formate-lyase activating enzyme [Ethanoligenens harbinense
           YUAN-3]
          Length = 258

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 44/123 (35%), Gaps = 29/123 (23%)

Query: 10  FLTLQGEGGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           F +L   G   G   R  VF    GC L           +C +C   DT         G 
Sbjct: 24  FQSL---GAVDGPGLRAVVFM--QGCPL-----------RCAYCHNPDT----WLADGGE 63

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGT 121
                 L + I        K G    ++GGEPLLQ      L   L + G   A++T+G 
Sbjct: 64  ETTAQALFEKILRYRPYFGKTGG-VTVSGGEPLLQWRFVAGLFSLLREAGVHTALDTSGV 122

Query: 122 IEP 124
            +P
Sbjct: 123 GDP 125


>gi|220933148|ref|YP_002510056.1| pyruvate formate-lyase activating enzyme [Halothermothrix orenii H
           168]
 gi|219994458|gb|ACL71061.1| pyruvate formate-lyase activating enzyme [Halothermothrix orenii H
           168]
          Length = 247

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC L           +C++C   DT         G R    +L   + +     
Sbjct: 24  VF--TQGCPL-----------RCQYCHNPDT----WMRKAGKRVEAGELLLRVLKCKPYM 66

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
           +  G    ++GGEP LQ      L++A  ++G   A++T+G
Sbjct: 67  DSSGGGVTISGGEPTLQPGFVRELLKACKEQGIHTALDTSG 107


>gi|317060665|ref|ZP_07925150.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D12]
 gi|313686341|gb|EFS23176.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D12]
          Length = 242

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 45/132 (34%), Gaps = 32/132 (24%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +CR+C   DT            Y  +++   +     
Sbjct: 20  IRFVLFLQGCPL-----------RCRYCHNVDT---WNLQHPNYIYTAEEILQEVNRVRA 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWI 131
                     ++GGEPLLQ D      Q  +K G   A++T+G      + E  +  D +
Sbjct: 66  FLTGG---VTVSGGEPLLQADFVKEFFQLCHKNGIHTALDTSGYIFTEKSKEVLEETDLV 122

Query: 132 CVSPKAGCDLKI 143
            +  K     K 
Sbjct: 123 LLDIKHIDPEKY 134


>gi|293402280|ref|ZP_06646418.1| pyruvate-formate lyase-activating enzyme [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291304387|gb|EFE45638.1| pyruvate-formate lyase-activating enzyme [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 379

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 18/101 (17%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F    GCN+           +C FC    +        +     +   ++++    E 
Sbjct: 170 TIF--TGGCNM-----------RCPFCQNADLVFLNENTSQIPTKDIIAFLKKRRSVLEG 216

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
                 +TGGEPLL   +   ++ + + G++I ++TNG+  
Sbjct: 217 ----VCITGGEPLLNDTLESFLRTIKELGYQIKLDTNGSYP 253


>gi|254391279|ref|ZP_05006484.1| radical SAM domain-containing protein [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704971|gb|EDY50783.1| radical SAM domain-containing protein [Streptomyces clavuligerus
           ATCC 27064]
          Length = 408

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 18/93 (19%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL           +C +C   +   +    G  +  +   L+++     +   R  +L
Sbjct: 25  GCNL-----------RCPYC---YASSEKCLPGELSPAESLALVDQ---IADMGARTLIL 67

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           TGGEP+L+ D+  + +   +RG  + + TNGT+
Sbjct: 68  TGGEPMLRKDLFDVAEHARERGLSVNMITNGTM 100


>gi|257463063|ref|ZP_05627465.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D12]
          Length = 241

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 45/132 (34%), Gaps = 32/132 (24%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +CR+C   DT            Y  +++   +     
Sbjct: 19  IRFVLFLQGCPL-----------RCRYCHNVDT---WNLQHPNYIYTAEEILQEVNRVRA 64

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWI 131
                     ++GGEPLLQ D      Q  +K G   A++T+G      + E  +  D +
Sbjct: 65  FLTGG---VTVSGGEPLLQADFVKEFFQLCHKNGIHTALDTSGYIFTEKSKEVLEETDLV 121

Query: 132 CVSPKAGCDLKI 143
            +  K     K 
Sbjct: 122 LLDIKHIDPEKY 133


>gi|169334502|ref|ZP_02861695.1| hypothetical protein ANASTE_00905 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259219|gb|EDS73185.1| hypothetical protein ANASTE_00905 [Anaerofustis stercorihominis DSM
           17244]
          Length = 235

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 20/106 (18%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           G   VF    GC            A+C +C          K G  +  +  DL++     
Sbjct: 19  GIRTVFF-LQGCP-----------ARCLYC----HNPDSWKIGAGSEVEAEDLVKRAKRG 62

Query: 81  GEKEGRY--CVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI 122
               G       +GGEPLLQ    +  I+AL K     A++ +GT 
Sbjct: 63  IPYYGDDGGVTFSGGEPLLQGEFLIEAIKALKKENINCAIDISGTY 108


>gi|227833911|ref|YP_002835618.1| pyruvate formate lyase activating enzyme [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184914|ref|ZP_06044335.1| pyruvate formate lyase activating enzyme [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454927|gb|ACP33680.1| pyruvate formate lyase activating enzyme [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 289

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 28/128 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ +F   SGC L           +C++C   DT    ++   G    ++ +   I+   
Sbjct: 67  RMTMFM--SGCPL-----------RCQYCHNPDT----MEMKVGTLERIEDVVKRIKRYK 109

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTI------EPPQGIDW 130
              +  G    ++GGEPL Q+     L++ ++  G    ++T+G +      E    ID 
Sbjct: 110 PVFKASGGGLTISGGEPLFQIAFARRLLKEVHDAGIHTTIDTSGYLGARLRDEDLDNIDL 169

Query: 131 ICVSPKAG 138
           + +  K+G
Sbjct: 170 VLLDVKSG 177


>gi|294816319|ref|ZP_06774962.1| Metallo cofactor biosynthesis protein [Streptomyces clavuligerus
           ATCC 27064]
 gi|326444650|ref|ZP_08219384.1| metallo cofactor biosynthesis protein [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328918|gb|EFG10561.1| Metallo cofactor biosynthesis protein [Streptomyces clavuligerus
           ATCC 27064]
          Length = 492

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 18/93 (19%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL           +C +C   +   +    G  +  +   L+++     +   R  +L
Sbjct: 109 GCNL-----------RCPYC---YASSEKCLPGELSPAESLALVDQ---IADMGARTLIL 151

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           TGGEP+L+ D+  + +   +RG  + + TNGT+
Sbjct: 152 TGGEPMLRKDLFDVAEHARERGLSVNMITNGTM 184


>gi|284998082|ref|YP_003419849.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5]
 gi|284445977|gb|ADB87479.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5]
          Length = 370

 Score = 55.8 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 25/114 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVL 90
           CNL           +CR+C   +V           ++    +IE       K  R     
Sbjct: 22  CNL-----------RCRYC---YVAAGIMGNNIMKLEDYMKIIENIISIKNKYNRIGITF 67

Query: 91  TGGEPLLQVDV-PLIQALNKRGF-EIAVETNGTIE--------PPQGIDWICVS 134
           TGGEP L  D+  +++     G   IA+ TNGT+            G++WI VS
Sbjct: 68  TGGEPTLHPDLIDMVRKAKDIGIDRIALVTNGTLMNKRFLDNLIDAGLEWIAVS 121


>gi|239828671|ref|YP_002951295.1| pyruvate formate-lyase activating enzyme [Geobacillus sp. WCH70]
 gi|239808964|gb|ACS26029.1| pyruvate formate-lyase activating enzyme [Geobacillus sp. WCH70]
          Length = 249

 Score = 55.8 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++ D ++      
Sbjct: 23  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEMTVEEIIDDVKTYLPFI 65

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
              G    ++GGEPLLQ+D  + L +A  K G   A++++G
Sbjct: 66  NASGGGITVSGGEPLLQIDFLIELFKACKKLGIHTAIDSSG 106


>gi|223985353|ref|ZP_03635423.1| hypothetical protein HOLDEFILI_02729 [Holdemania filiformis DSM
           12042]
 gi|223962679|gb|EEF67121.1| hypothetical protein HOLDEFILI_02729 [Holdemania filiformis DSM
           12042]
          Length = 402

 Score = 55.8 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 16/96 (16%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
             GCN            +C FC    +        +   ++L D +  +    E      
Sbjct: 196 TGGCNF-----------RCPFCQNSDLVFLAENMAQIPKEELFDFLNRRQGILEG----I 240

Query: 89  VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
            ++GGEPLLQ  +   ++ + + G+ + ++TNG+  
Sbjct: 241 CISGGEPLLQPGIEVFLRQIKELGYPVKLDTNGSFP 276


>gi|167759293|ref|ZP_02431420.1| hypothetical protein CLOSCI_01640 [Clostridium scindens ATCC 35704]
 gi|167663167|gb|EDS07297.1| hypothetical protein CLOSCI_01640 [Clostridium scindens ATCC 35704]
          Length = 230

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 18/101 (17%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            VF   +GCN            +C FC    + I   K    +++++   ++++    + 
Sbjct: 21  TVF--TAGCNF-----------RCPFCHNASLVIDTYKNEEISLEEVYSYLKKRQGILDG 67

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
                 +TGGEPL+Q  +   +  + + G+ + ++TNG+  
Sbjct: 68  ----VCVTGGEPLIQHGIEEFLGNIKEMGYAVKLDTNGSFP 104


>gi|150403516|ref|YP_001330810.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanococcus maripaludis C7]
 gi|150034546|gb|ABR66659.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanococcus maripaludis C7]
          Length = 236

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 30/125 (24%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF   SGCN+  G  Q+  +               T       +++ + ++  +      
Sbjct: 22  VF--LSGCNMKCGYCQNYETI-------------TTNISEMTAEEVFNSMDLMFAES--- 63

Query: 85  GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSP 135
               V++GGEP LQ +  + L +   ++GF + ++TNGT           + +D+I +  
Sbjct: 64  ---LVISGGEPTLQPEAVLELAKLAKEKGFPVKLDTNGTNPDLVEKLISDKLLDYIAIDV 120

Query: 136 KAGCD 140
           KAG D
Sbjct: 121 KAGFD 125


>gi|21886612|dbj|BAC05499.1| BssD [Thauera sp. DNT-1]
          Length = 383

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 18/124 (14%)

Query: 34  LWSGREQDRLSAQCR-FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           L   R++     +C   C     G + + G    +D++   +          G    ++G
Sbjct: 133 LKLDRDKCTNCMRCVAVC---LTGSRESVGVEMTLDEILQEVLSDEPFYRNSGGGVTISG 189

Query: 93  GEPLLQVD--VPLIQALNKRGFEIAVETN------GTIEPPQG------IDWICVSPKAG 138
           G+PL      + L + + +RG  +A+ET+      GTI+P         +D   ++PK  
Sbjct: 190 GDPLFHPAFTLELARRIKERGVHVAIETSCFPKKWGTIQPLLEFVDLFIVDLKSLNPKKH 249

Query: 139 CDLK 142
            ++ 
Sbjct: 250 EEVV 253


>gi|240144448|ref|ZP_04743049.1| pyruvate formate-lyase 1-activating enzyme [Roseburia intestinalis
           L1-82]
 gi|257203558|gb|EEV01843.1| pyruvate formate-lyase 1-activating enzyme [Roseburia intestinalis
           L1-82]
 gi|291535660|emb|CBL08772.1| pyruvate formate-lyase 1-activating enzyme [Roseburia intestinalis
           M50/1]
 gi|291540927|emb|CBL14038.1| pyruvate formate-lyase 1-activating enzyme [Roseburia intestinalis
           XB6B4]
          Length = 249

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 43/119 (36%), Gaps = 29/119 (24%)

Query: 8   EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F T+ G G        VF  F GC +           +C++C   DT       T G 
Sbjct: 8   ESFGTVDGPGVRFV----VF--FEGCPM-----------RCQYCHNPDT----WVLTDGK 46

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           +   D++ D                  TGGEP+LQ+D    L       G    ++T+G
Sbjct: 47  QMEADEIIDRFLRN--ASFYRTGGITATGGEPMLQIDFLTELFAKAKAHGIHTCLDTSG 103


>gi|172056644|ref|YP_001813104.1| pyruvate formate-lyase activating enzyme [Exiguobacterium sibiricum
           255-15]
 gi|171989165|gb|ACB60087.1| pyruvate formate-lyase activating enzyme [Exiguobacterium sibiricum
           255-15]
          Length = 242

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 25/114 (21%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C++C   DT     +   G   +  ++ +  E    
Sbjct: 22  IRFIVFTQGCPL-----------RCQYCHNADT----WEFGCGRSVSATEIIEEAESYRS 66

Query: 80  TGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
             E  G     +GGEPL Q       ++   ++G    ++T G++  P+ ID I
Sbjct: 67  FFEATGGGITFSGGEPLAQPEFLEAALREAKQKGMHTVIDTAGSV-VPKNIDRI 119


>gi|304438738|ref|ZP_07398666.1| pyruvate formate-lyase activating enzyme [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304372740|gb|EFM26318.1| pyruvate formate-lyase activating enzyme [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 307

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 22/99 (22%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
             GC +           +C +C   DT     + T G   +V+++ +  E+  +  +  G
Sbjct: 84  LQGCPM-----------RCLYCHNPDT----WRTTGGKLMSVEEVLNDYEKYRVYLKNGG 128

Query: 86  RYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
               +TGGEPLLQ+D    L +   KR    A++++G +
Sbjct: 129 --ITVTGGEPLLQMDFVTELFKEAKKRNIHTALDSSGAL 165


>gi|295402436|ref|ZP_06812389.1| pyruvate formate-lyase activating enzyme [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112710|ref|YP_003991026.1| pyruvate formate-lyase activating enzyme [Geobacillus sp. Y4.1MC1]
 gi|294975527|gb|EFG51152.1| pyruvate formate-lyase activating enzyme [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217811|gb|ADP76415.1| pyruvate formate-lyase activating enzyme [Geobacillus sp. Y4.1MC1]
          Length = 249

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++ D ++      
Sbjct: 23  IF--TQGC-----------VLRCQYCHNADTWEIG----KGKEMTVEEIIDDVKTYLPFI 65

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
                   ++GGEPLLQ+D  + L +A  K G   A++++G
Sbjct: 66  NASNGGITVSGGEPLLQIDFLIELFKACKKLGIHTAIDSSG 106


>gi|73668569|ref|YP_304584.1| radical activating enzyme [Methanosarcina barkeri str. Fusaro]
 gi|72395731|gb|AAZ70004.1| radical activating enzyme [Methanosarcina barkeri str. Fusaro]
          Length = 260

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 19/104 (18%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           GR AV   F GC L           +C +C            G   V+   + +EEQ   
Sbjct: 18  GRAAVTIFFGGCPL-----------RCPYC-----QNHPYLQGLNPVE--LEFVEEQIKE 59

Query: 81  GEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
                   V +GGEPL+Q  + PL +   + G  I + TNG   
Sbjct: 60  STLFVSAVVFSGGEPLMQKAIVPLAEFAREIGLAIGIHTNGCYP 103


>gi|262039689|ref|ZP_06012978.1| pyruvate formate-lyase-activating enzyme [Leptotrichia goodfellowii
           F0264]
 gi|261746306|gb|EEY33856.1| pyruvate formate-lyase-activating enzyme [Leptotrichia goodfellowii
           F0264]
          Length = 259

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 36/132 (27%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC--------DTDFV 55
           IF     +L  GEG       VF  F GC L           +C +C        +T+++
Sbjct: 8   IFNIQRYSLNDGEGIRT---IVF--FKGCPL-----------RCPWCSNPESQSFETEYM 51

Query: 56  -----GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALN 108
                G   T G  Y VD++     +  +     G    L+GGE L Q +    L++ L 
Sbjct: 52  KSNVNGNIKTIGKWYTVDEIIKEALKDEVFFNTSGGGVTLSGGEVLAQGEFIEELLKELK 111

Query: 109 KRGFEIAVETNG 120
           +     A+ET G
Sbjct: 112 ENDINTAIETCG 123


>gi|90425004|ref|YP_533374.1| ribonucleoside-triphosphate reductase, anaerobic-like
           [Rhodopseudomonas palustris BisB18]
 gi|90107018|gb|ABD89055.1| Ribonucleoside-triphosphate reductase, anaerobic-like
           [Rhodopseudomonas palustris BisB18]
          Length = 219

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 7/119 (5%)

Query: 28  RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
           R S C+             C + D  +        G+ +       + +           
Sbjct: 14  RLSTCDWPGQLAATVFCQGCPW-DCAYCHNPQLLPGKADAALPWSEVLQFLQRRRGLLDA 72

Query: 88  CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCD 140
            V +GGEP LQ  +P  I+A+   G+ + + T G            +DW+    KA  +
Sbjct: 73  VVFSGGEPTLQTALPRAIEAVRAMGYRVGLHTGGAYPQRLASILPLLDWVGFDVKAPFE 131


>gi|269469075|gb|EEZ80630.1| pyruvate-formate lyase-activating enzyme [uncultured SUP05 cluster
           bacterium]
          Length = 207

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           NL           +CR+C  +   I  +K  +++ +Q+ + I+ +    +      V +G
Sbjct: 21  NLSCVVFTQGCPWRCRYC-HNHDLIPTSKQTQFDWEQIVEFIKTRVGLLDA----VVFSG 75

Query: 93  GEPLLQV-DVPLIQALNKRGFEIAVETNGTIE--PPQGIDWI 131
           GEP LQ   +  I+ +   GF++ + T G       Q +D++
Sbjct: 76  GEPCLQKGLLGAIKRVKALGFKVGLHTGGAYPNRLKQCLDYV 117


>gi|265767393|ref|ZP_06095059.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 2_1_16]
 gi|263252698|gb|EEZ24210.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 2_1_16]
          Length = 261

 Score = 55.4 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 28/110 (25%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFC--------DTDFVGIQGTK---GGRYNVDQLAD 72
            +F    GC L           +C +C           ++  +G K   G +  V++L  
Sbjct: 34  TIF--LKGCPL-----------RCAWCHNPEGISPQPQYMIKKGVKSICGYQITVEELVT 80

Query: 73  LIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           +IE+             LTGGEPL Q D  + L++ L       A+ET+G
Sbjct: 81  MIEKNRSIYTLNRGGVTLTGGEPLFQPDFVIELLRQLPD--IHTAIETSG 128


>gi|294793985|ref|ZP_06759122.1| Fe-S oxidoreductase of MoaA family protein [Veillonella sp. 3_1_44]
 gi|294455555|gb|EFG23927.1| Fe-S oxidoreductase of MoaA family protein [Veillonella sp. 3_1_44]
          Length = 201

 Score = 55.4 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 60/201 (29%), Gaps = 67/201 (33%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRG----------- 111
             V ++AD+IE              +TGGEPLLQ    V LI  LN R            
Sbjct: 1   MTVAEVADVIESLG------NHRITITGGEPLLQEGAVVKLIDELNCRKALKIQNSPSNQ 54

Query: 112 --------------------------FEIAVETNGTIEPPQGID--WICVSPKAGCDLK- 142
                                     ++  +ETNGTI P    +  W     K    L  
Sbjct: 55  SELTCINDVDKDLDTFDKRERPNNSPYDFNIETNGTIVPSFQRENVWFTYDYKTPSSLAE 114

Query: 143 -------IKGGQE---LKLVF---PQVNVSPENYIGFD-FERFSLQPMDGPFLEENTNLA 188
                   K   E   +K V      ++        +    +  + P+ G     +    
Sbjct: 115 ESMNIDIFKVATERDLIKFVVGSPEDLDCMRRIISKYPTVAQIYVSPVWGQIEAAS---I 171

Query: 189 ISYCFQNP--KWRLSVQTHKF 207
           I+Y         R  +Q HKF
Sbjct: 172 INYMKTYNLQNVRFQLQIHKF 192


>gi|227496243|ref|ZP_03926540.1| [formate-C-acetyltransferase]-activating enzyme [Actinomyces
           urogenitalis DSM 15434]
 gi|226834231|gb|EEH66614.1| [formate-C-acetyltransferase]-activating enzyme [Actinomyces
           urogenitalis DSM 15434]
          Length = 294

 Score = 55.4 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 69/193 (35%), Gaps = 39/193 (20%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   +GC L           +C++C   DT F+   G        ++L   +    
Sbjct: 72  RMTVF--LNGCPL-----------RCQYCHNPDT-FLMKDGEP---VEAEELLRRMRRYR 114

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130
                      L+GGE L+Q      L++   K G    ++T+G      + E    +D 
Sbjct: 115 GVFRASKGGITLSGGEVLMQPAFAGRLLEGAKKMGIHTCIDTSGFLGANASDEMLDNVDL 174

Query: 131 ICVSPKAGCDLKIKG--GQELKLVFPQVNVSPENYIGFDFERFSLQP--MDGPFLEENTN 186
           + +  K+G +   K   G++L       +      I   + RF L P   D P   E   
Sbjct: 175 VLLDVKSGDEETYKRVTGRQLAPTIAFGDRLAAKGIEI-WARFVLVPGLTDDPENIEKVA 233

Query: 187 LAISYCFQNPKWR 199
             I       +WR
Sbjct: 234 QIIE------RWR 240


>gi|60683601|ref|YP_213745.1| putative pyruvate formate-lyase activating enzyme [Bacteroides
           fragilis NCTC 9343]
 gi|253566526|ref|ZP_04843979.1| formate acetyltransferase activating enzyme [Bacteroides sp. 3_2_5]
 gi|60495035|emb|CAH09853.1| putative pyruvate formate-lyase activating enzyme [Bacteroides
           fragilis NCTC 9343]
 gi|251944698|gb|EES85173.1| formate acetyltransferase activating enzyme [Bacteroides sp. 3_2_5]
 gi|301165116|emb|CBW24684.1| putative pyruvate formate-lyase activating enzyme [Bacteroides
           fragilis 638R]
          Length = 261

 Score = 55.4 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 28/110 (25%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFC--------DTDFVGIQGTK---GGRYNVDQLAD 72
            +F    GC L           +C +C           ++  +G K   G +  V++L  
Sbjct: 34  TIF--LKGCPL-----------RCAWCHNPEGISPQPQYMIKKGVKSICGYQITVEELVT 80

Query: 73  LIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           +IE+             LTGGEPL Q D  + L++ L       A+ET+G
Sbjct: 81  MIEKNRSIYTLNRGGVTLTGGEPLFQPDFVIELLRQLPD--IHTAIETSG 128


>gi|21227468|ref|NP_633390.1| ribonucleoside-triphosphate reductase activating enzyme
           [Methanosarcina mazei Go1]
 gi|20905840|gb|AAM31062.1| Ribonucleoside-triphosphate reductase activating enzyme
           [Methanosarcina mazei Go1]
          Length = 263

 Score = 55.4 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 23/108 (21%)

Query: 19  HAGRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
             G+ A  +F R  GC L           +C +C  +   ++GT           + +EE
Sbjct: 20  WTGKSAFTIFFR--GCPL-----------RCPYC-QNHPYLEGTGLVE------LEFVEE 59

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
           +  + +      V +GGEPL+Q  +  L +     G  + + TNG   
Sbjct: 60  KIKSSKPFVSAVVFSGGEPLMQAGIVDLAEFAKNLGLSVGIHTNGCYP 107


>gi|53715662|ref|YP_101654.1| formate acetyltransferase activating enzyme [Bacteroides fragilis
           YCH46]
 gi|52218527|dbj|BAD51120.1| formate acetyltransferase activating enzyme [Bacteroides fragilis
           YCH46]
          Length = 250

 Score = 55.4 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 28/110 (25%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFC--------DTDFVGIQGTK---GGRYNVDQLAD 72
            +F    GC L           +C +C           ++  +G K   G +  V++L  
Sbjct: 23  TIF--LKGCPL-----------RCAWCHNPEGISPQPQYMIKKGVKSICGYQITVEELVT 69

Query: 73  LIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           +IE+             LTGGEPL Q D  + L++ L       A+ET+G
Sbjct: 70  MIEKNRSIYTLNRGGVTLTGGEPLFQPDFVIELLRQLPD--IHTAIETSG 117


>gi|289192331|ref|YP_003458272.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938781|gb|ADC69536.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanocaldococcus sp. FS406-22]
          Length = 240

 Score = 55.4 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 36/141 (25%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +F    GCN+           +C +C    +           V+++ + I+  +      
Sbjct: 24  IF--LHGCNM-----------RCPYC--HNLRFMLEHKREMTVEEIFNDIDFLFADA--- 65

Query: 85  GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSP 135
               V++GGEP LQ D  + + +   ++GF + ++TNGT             ID++ +  
Sbjct: 66  ---IVISGGEPTLQKDAVIEIARYAKEKGFPVKIDTNGTHPEVIEELIKNNLIDYVAIDV 122

Query: 136 KAGCD-----LKIKG-GQELK 150
           K   D     +K +  G E+K
Sbjct: 123 KCRFDRYKEFVKCREDGNEIK 143


>gi|313905270|ref|ZP_07838637.1| pyruvate formate-lyase activating enzyme [Eubacterium
           cellulosolvens 6]
 gi|313469881|gb|EFR65216.1| pyruvate formate-lyase activating enzyme [Eubacterium
           cellulosolvens 6]
          Length = 244

 Score = 55.4 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 71/180 (39%), Gaps = 46/180 (25%)

Query: 8   EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F ++ G G        +F R  GC             +CR+C   DT  +     K  
Sbjct: 10  ETFGSVDGPGVRFV----IFVR--GC-----------KMRCRYCHNADTWKMQTDNMK-- 50

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG- 120
               D+L D   E++    ++     ++GGEPLLQ+D  + L +   +RG +  ++T G 
Sbjct: 51  --TADELLDQ-AERYKAYWRDDGGITVSGGEPLLQIDFLLDLFKKAKERGIKTCIDTAGQ 107

Query: 121 --TIEPP---------QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
             T E P         Q  D + V      D+K    +E K +  Q N +  +   +  E
Sbjct: 108 PFTREEPFFSKFKELMQYTDLLLV------DIKHIDSEEHKKLTAQPNENIHDMFRYLSE 161


>gi|262382718|ref|ZP_06075855.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp.
           2_1_33B]
 gi|262295596|gb|EEY83527.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp.
           2_1_33B]
          Length = 244

 Score = 55.4 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 33/122 (27%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F T+ G G          RF     GC L           +C +C   DT     +G 
Sbjct: 10  ESFGTVDGPG---------IRFVVFMQGCPL-----------RCLYCHNPDT--WNPKGK 47

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
              +    +L   +        + G    +TGGEPLLQ +      +   ++G   A++T
Sbjct: 48  VKYQMTPGELLTEVLRYKSFIARGG--VTVTGGEPLLQPEFLKEFFRLCQEQGLHTALDT 105

Query: 119 NG 120
           +G
Sbjct: 106 SG 107


>gi|302669153|ref|YP_003832303.1| anaerobic ribonucleoside triphosphate reductase activating protein
           NrdG2 [Butyrivibrio proteoclasticus B316]
 gi|302396817|gb|ADL35721.1| anaerobic ribonucleoside triphosphate reductase activating protein
           NrdG2 [Butyrivibrio proteoclasticus B316]
          Length = 238

 Score = 55.4 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 21/109 (19%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            VF    GC+            +C FC  ++  + G+     + D+    + ++    + 
Sbjct: 21  TVF--LGGCDF-----------RCPFC-HNYELVDGSAEPVMDEDEFFSFLSKREGILDG 66

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE--PPQGID 129
                 +TGGEP L+ D+    + + + GF + ++TNG       + ID
Sbjct: 67  ----VCITGGEPCLRADLANFARQIKEMGFTVKLDTNGAHPDRVKELID 111


>gi|116749627|ref|YP_846314.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698691|gb|ABK17879.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 368

 Score = 55.4 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 24/124 (19%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQ----GTKGGRYNVDQLADLIEEQWITGEKEGR 86
           GCNL            CR C   ++G +      +    +V  +  +I++    G     
Sbjct: 23  GCNLC-----------CRHC---WIGPKHLSAADRPTGLDVRLVRSIIDQAKPLGLSG-- 66

Query: 87  YCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWI--CVSPKAGCDLKI 143
              LTGGEPLL    + +++ L      + VETNGT+  P+    +  C SP     L  
Sbjct: 67  -VKLTGGEPLLHPGILDILEILRAGNLPVNVETNGTLCTPELARALAGCSSPSVAVSLDA 125

Query: 144 KGGQ 147
              +
Sbjct: 126 PDAE 129


>gi|150009974|ref|YP_001304717.1| pyruvate-formate lyase-activating enzyme [Parabacteroides
           distasonis ATCC 8503]
 gi|255012762|ref|ZP_05284888.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 2_1_7]
 gi|256838769|ref|ZP_05544279.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp.
           D13]
 gi|298374331|ref|ZP_06984289.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 3_1_19]
 gi|301307860|ref|ZP_07213816.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 20_3]
 gi|149938398|gb|ABR45095.1| pyruvate-formate lyase-activating enzyme [Parabacteroides
           distasonis ATCC 8503]
 gi|256739688|gb|EEU53012.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp.
           D13]
 gi|298268699|gb|EFI10354.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 3_1_19]
 gi|300834203|gb|EFK64817.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 20_3]
          Length = 244

 Score = 55.4 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 33/122 (27%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F T+ G G          RF     GC L           +C +C   DT     +G 
Sbjct: 10  ESFGTVDGPG---------IRFVVFMQGCPL-----------RCLYCHNPDT--WNPKGK 47

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
              +    +L   +        + G    +TGGEPLLQ +      +   ++G   A++T
Sbjct: 48  VKYQMTPGELLTEVLRYKSFIARGG--VTVTGGEPLLQPEFLKEFFRLCQEQGLHTALDT 105

Query: 119 NG 120
           +G
Sbjct: 106 SG 107


>gi|317497017|ref|ZP_07955345.1| glycyl-radical enzyme activating protein family [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316895677|gb|EFV17831.1| glycyl-radical enzyme activating protein family [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 304

 Score = 55.4 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 48  RFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQ 105
            +C T  + +        +V+ + + I +             ++GGEPLLQ      L++
Sbjct: 91  DWCPTGAIAMDS---REMSVEMVMEEIRKDKSFYRYGNGGVTISGGEPLLQWKFTKELLK 147

Query: 106 ALNKRGFEIAVETN 119
           A  K G   A+ET+
Sbjct: 148 ACKKEGIHTAIETS 161


>gi|317499702|ref|ZP_07957960.1| radical SAM superfamily protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893008|gb|EFV15232.1| radical SAM superfamily protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 157

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 23/101 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC           + +CRFC   DT     + + G  Y  ++L   I       
Sbjct: 24  IF--LQGC-----------ALRCRFCHNPDT----WELSGGTEYTPEELVAKIRRFKPYF 66

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
           +++G     +GGEPLLQ D     ++     G    ++T G
Sbjct: 67  KEDGG-VTFSGGEPLLQPDFLKETLKLCKNEGIHTCIDTAG 106


>gi|291558950|emb|CBL37750.1| glycyl-radical enzyme activating protein family [butyrate-producing
           bacterium SSC/2]
          Length = 304

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 48  RFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQ 105
            +C T  + +        +V+ + + I +             ++GGEPLLQ      L++
Sbjct: 91  DWCPTGAIAMDS---REMSVEMVMEEIRKDKSFYRYGNGGVTISGGEPLLQWKFTKELLK 147

Query: 106 ALNKRGFEIAVETN 119
           A  K G   A+ET+
Sbjct: 148 ACKKEGIHTAIETS 161


>gi|218258025|ref|ZP_03474467.1| hypothetical protein PRABACTJOHN_00120 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225824|gb|EEC98474.1| hypothetical protein PRABACTJOHN_00120 [Parabacteroides johnsonii
           DSM 18315]
          Length = 240

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 57/159 (35%), Gaps = 39/159 (24%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F T+ G G          RF     GC L           +C +C   DT +   + T
Sbjct: 9   ESFGTVDGPG---------IRFVVFMQGCPL-----------RCLYCHNPDT-WEVKRET 47

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
                    LA+++  +    +       +TGGEPLLQ +      +   + G   A++T
Sbjct: 48  PYQLEPKALLAEVLRYKNFIAKGG---VTVTGGEPLLQPEFLKEFFRLCRENGIHTALDT 104

Query: 119 NG------TIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151
           +G       +E  + +D + +  K            +KL
Sbjct: 105 SGYICSGKALEVLEYVDLVLLDIKTIDAGLHPRLTAVKL 143


>gi|167765640|ref|ZP_02437693.1| hypothetical protein CLOSS21_00124 [Clostridium sp. SS2/1]
 gi|167712686|gb|EDS23265.1| hypothetical protein CLOSS21_00124 [Clostridium sp. SS2/1]
          Length = 309

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 48  RFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQ 105
            +C T  + +        +V+ + + I +             ++GGEPLLQ      L++
Sbjct: 96  DWCPTGAIAMDS---REMSVEMVMEEIRKDKSFYRYGNGGVTISGGEPLLQWKFTKELLK 152

Query: 106 ALNKRGFEIAVETN 119
           A  K G   A+ET+
Sbjct: 153 ACKKEGIHTAIETS 166


>gi|150388344|ref|YP_001318393.1| glycyl-radical activating family protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149948206|gb|ABR46734.1| glycyl-radical enzyme activating protein family [Alkaliphilus
           metalliredigens QYMF]
          Length = 258

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 23/111 (20%)

Query: 20  AGRVA-VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTK----GGRYNVDQLA 71
            G    VF  F GC L           +C +C   ++  + I+       G    V ++ 
Sbjct: 24  TGIRTTVF--FKGCPL-----------RCLWCANPESQKIEIEEMGERKIGRIATVQEVL 70

Query: 72  DLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
           D++    +   + G    L+GGEPL+Q +    L++   ++    A+ET+G
Sbjct: 71  DVVSRDKMFYNRSGGGMTLSGGEPLMQPEFASALVKEAKRQDIHTAIETSG 121


>gi|20088970|ref|NP_615045.1| radical activating enzyme [Methanosarcina acetivorans C2A]
 gi|19913819|gb|AAM03525.1| radical activating enzyme [Methanosarcina acetivorans C2A]
          Length = 264

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 64/189 (33%), Gaps = 35/189 (18%)

Query: 19  HAGRVAV--FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
             G+ AV  F R  GC L           +C +C  ++  ++G            D ++E
Sbjct: 20  WTGKSAVTIFFR--GCPL-----------RCPYC-QNYPYLEGAGLVE------LDFLKE 59

Query: 77  QWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQG-------I 128
           Q    +      V +GGEPL+Q   +PL +     G  + V TNG              +
Sbjct: 60  QIKISKPFVSAVVFSGGEPLMQEAIIPLAEFAKILGLAVGVHTNGCYPERAAELVERKLV 119

Query: 129 DWICVSPKAGCD-----LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
           D   +  KA  D      K+ G  E K     V  +PE       +           LE 
Sbjct: 120 DKFFIDVKAPLDDPELYGKVSGWVEYKGASVAVKRNPEEIAAAVAKTIETADTSDLELEL 179

Query: 184 NTNLAISYC 192
            T +   + 
Sbjct: 180 RTTVIRDFI 188


>gi|283768229|ref|ZP_06341142.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Bulleidia extructa W1219]
 gi|283105106|gb|EFC06477.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Bulleidia extructa W1219]
          Length = 373

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 16/95 (16%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           SGCNL           +C FC+   +     +        + D ++ +    E       
Sbjct: 177 SGCNL-----------KCPFCNQKDLVFLPQEANFLETQDILDDLKTRVGFLEG----VC 221

Query: 90  LTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123
           ++GGEP  Q   +P +  + K G  I +ETNGT  
Sbjct: 222 ISGGEPCQQEALIPFLVEIKKLGLAIKLETNGTFP 256


>gi|254361126|ref|ZP_04977270.1| hypothetical protein
 gi|261491929|ref|ZP_05988506.1| purine nucleoside phosphorylase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496267|ref|ZP_05992672.1| purine nucleoside phosphorylase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153092617|gb|EDN73666.1| [formate-C-acetyltransferase]-activating enzyme [Mannheimia
           haemolytica PHL213]
 gi|261308098|gb|EEY09396.1| purine nucleoside phosphorylase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261312396|gb|EEY13522.1| purine nucleoside phosphorylase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 262

 Score = 55.0 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 30/151 (19%)

Query: 3   LYSIKEIFLTL---------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD 53
           + ++ EIF+ L         +G+G      ++F    GC L      +  +         
Sbjct: 1   MAALSEIFVPLHRIIPFSNVEGQGNRT---SIF--LQGCKLNCLYCHNPETIP------R 49

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRG 111
           +         +Y  DQ+ + +           R   ++GGEP +     VPL +AL ++G
Sbjct: 50  YSKEAKQVSLQYLYDQVMEAV--------PFIRGVTISGGEPTIHHKKLVPLFEALREQG 101

Query: 112 FEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
               ++++G  +       I V+ K   DLK
Sbjct: 102 LTCYLDSSGFFDFEATEPLINVTDKFLFDLK 132


>gi|293375734|ref|ZP_06622006.1| pyruvate formate-lyase 1-activating enzyme [Turicibacter sanguinis
           PC909]
 gi|292645677|gb|EFF63715.1| pyruvate formate-lyase 1-activating enzyme [Turicibacter sanguinis
           PC909]
          Length = 253

 Score = 55.0 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 33/169 (19%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
            E F T+ G G        VF    GC L           +C +C          K    
Sbjct: 18  VESFGTVDGPGLRFI----VFV--QGCGL-----------RCAYC----HNPDSWKMKEG 56

Query: 66  NVDQLADLIEEQWITGEKEGRY---CVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
            V +++++++E     E          ++GGEPLLQ+     L +   K G    ++T+G
Sbjct: 57  KVTEVSEIVDELIKYKEFFEASGGGITVSGGEPLLQMPFVTELFKECKKHGIHTNIDTSG 116

Query: 121 -----TIEPPQGI-DWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY 163
                T E    + + + V+     D+K+    + K +  + N     +
Sbjct: 117 DLHFNTEERKAQLKELLSVTDMLMLDIKMFDAHKHKQLTGKDNAHILEF 165


>gi|158319999|ref|YP_001512506.1| radical SAM domain-containing protein [Alkaliphilus oremlandii
           OhILAs]
 gi|158140198|gb|ABW18510.1| Radical SAM domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 242

 Score = 55.0 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 22/124 (17%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
            +F    GCNL            C +C   +T  +    T    Y V++L  L+++    
Sbjct: 27  TIFV--QGCNL-----------NCIYCHNPETIQLPCSETTHTNYTVEELITLLKQY--- 70

Query: 81  GEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAG 138
                R   ++GGE  +  D  V L + + K G    V+TNG       +D I  + K  
Sbjct: 71  -SPYIRGITVSGGEATIYSDFLVELFKEVKKLGITCYVDTNGIFNKDHKLDLIEATDKFL 129

Query: 139 CDLK 142
            D+K
Sbjct: 130 FDIK 133


>gi|325838715|ref|ZP_08166630.1| pyruvate formate-lyase 1-activating enzyme [Turicibacter sp. HGF1]
 gi|325490765|gb|EGC93072.1| pyruvate formate-lyase 1-activating enzyme [Turicibacter sp. HGF1]
          Length = 243

 Score = 55.0 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 33/169 (19%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
            E F T+ G G        VF    GC L           +C +C          K    
Sbjct: 8   VESFGTVDGPGLRFI----VFV--QGCGL-----------RCAYC----HNPDSWKMKEG 46

Query: 66  NVDQLADLIEEQWITGEKEGRY---CVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
            V +++++++E     E          ++GGEPLLQ+     L +   K G    ++T+G
Sbjct: 47  KVTEVSEIVDELIKYKEFFEASGGGITVSGGEPLLQMPFVTELFKECKKHGIHTNIDTSG 106

Query: 121 -----TIEPPQGI-DWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY 163
                T E    + + + V+     D+K+    + K +  + N     +
Sbjct: 107 DLHFNTEERKAQLKELLSVTDMLMLDIKMFDAHKHKQLTGKDNAHILEF 155


>gi|291520376|emb|CBK75597.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Butyrivibrio fibrisolvens 16/4]
          Length = 231

 Score = 55.0 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 18/101 (17%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F    GCN            +C +C    + +       Y+ D++ D + ++    + 
Sbjct: 21  TIF--TGGCNF-----------KCPYCHNRDLVMPPADVLAYSKDEIFDHLNKKKKILDG 67

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
                 +TGGEP L  D+P  I  +   G  + ++TNGT  
Sbjct: 68  ----VCITGGEPTLHKDLPDFISEIKDLGLLVKLDTNGTNP 104


>gi|328947091|ref|YP_004364428.1| pyruvate formate-lyase activating enzyme [Treponema succinifaciens
           DSM 2489]
 gi|328447415|gb|AEB13131.1| pyruvate formate-lyase activating enzyme [Treponema succinifaciens
           DSM 2489]
          Length = 248

 Score = 54.6 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 30/120 (25%)

Query: 8   EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F ++ G G        +F  FSGC L           +C++C   DT        KG 
Sbjct: 9   ESFGSVDGPGVRFI----IF--FSGCPL-----------RCKYCHNPDT----WDMAKGK 47

Query: 64  RYNVDQLA-DLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
            Y  D+L  + +  +   G K G    ++GGEPL+Q+D  + L     ++G    ++T G
Sbjct: 48  LYTADELLNEALSCKAYWGAKGG--ITVSGGEPLMQLDFLLELFTKAKEKGVNTCIDTAG 105


>gi|304317366|ref|YP_003852511.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778868|gb|ADL69427.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 227

 Score = 54.6 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 65/190 (34%), Gaps = 34/190 (17%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            VF   SGCN             C +C                  +  +   +     + 
Sbjct: 20  TVF--TSGCNFT-----------CPYC------HNSQLIDLQKPIKSEEEFIDYLKKRKN 60

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-------PPQGIDWICVS- 134
                 +TGGEP L  D+   I+ +   GF + ++TNG+             +D+I +  
Sbjct: 61  LIDGVCITGGEPTLWKDLKNFIKTIRDLGFSVKLDTNGSRPNVIEDLLNDNLLDYIAMDV 120

Query: 135 --PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE----RFSLQPMDGPFLEENTNLA 188
             PK    L +K  +++  +   +++     I ++F     +  L   D   +    ++ 
Sbjct: 121 KAPKNKYGLFVKNNEDIGRIVKSIDLIKNCGIDYEFRTTVNKKLLSTDDFLSIANMISVC 180

Query: 189 ISYCFQNPKW 198
             Y  Q  K+
Sbjct: 181 KRYVLQRYKY 190


>gi|225849855|ref|YP_002730089.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Persephonella marina EX-H1]
 gi|225646311|gb|ACO04497.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Persephonella marina EX-H1]
          Length = 231

 Score = 54.6 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 18/100 (18%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +F    GCNL           +C +C    + +    G    +D++   +E +    E  
Sbjct: 23  IFV--QGCNL-----------RCPYCHNRHLVLPEYFGYTIGIDEVFRFLESRKKMIEG- 68

Query: 85  GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
               V++GGEP +   +   I+ + + G+ + ++TNGT  
Sbjct: 69  ---IVISGGEPTIYEGIKDFIKKIKEFGYLVKLDTNGTNP 105


>gi|323704570|ref|ZP_08116148.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536032|gb|EGB25805.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 227

 Score = 54.6 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 32/159 (20%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
             VF   SGCN             C +C ++  +  +          +  D  +      
Sbjct: 19  ATVFV--SGCNFV-----------CPYCHNSQLIKSKKPVKSEAEFLEYLDKRKNLIDG- 64

Query: 82  EKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP-------PQGIDWICV 133
                   +TGGEP L   +   I+ +   GF   ++TNG+             +D+I +
Sbjct: 65  ------VCITGGEPTLWDGLYDFIKDIKDLGFSAKLDTNGSRPDVIERLLNDDLVDYIAM 118

Query: 134 S---PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
               PK    L +K  ++++ +   +++   + I ++F 
Sbjct: 119 DVKAPKNKYGLFVKNNEDIERIVKSIDLIKNSGIDYEFR 157


>gi|222150683|ref|YP_002559836.1| formate acetyltransferase activating enzyme [Macrococcus
           caseolyticus JCSC5402]
 gi|222119805|dbj|BAH17140.1| formate acetyltransferase activating enzyme [Macrococcus
           caseolyticus JCSC5402]
          Length = 251

 Score = 54.6 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 13/93 (13%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
             GC             +C+FC        GT       +++ + I          G   
Sbjct: 26  TQGC-----------LLRCQFCHNPDTWEIGTPSREVTAEEMVEEIVPYIPYFNASGGGV 74

Query: 89  VLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
            ++GGEPLLQ+     L + L + G    ++T+
Sbjct: 75  TISGGEPLLQLPFIEQLFRRLKEEGIHTCIDTS 107


>gi|255011511|ref|ZP_05283637.1| putative pyruvate formate-lyase activating enzyme [Bacteroides
           fragilis 3_1_12]
 gi|313149337|ref|ZP_07811530.1| pyruvate-formate lyase-activating enzyme [Bacteroides fragilis
           3_1_12]
 gi|313138104|gb|EFR55464.1| pyruvate-formate lyase-activating enzyme [Bacteroides fragilis
           3_1_12]
          Length = 261

 Score = 54.6 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 28/110 (25%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFC--------DTDFVGIQGTK---GGRYNVDQLAD 72
            +F    GC L            C +C           ++  +G K   G +  V++L  
Sbjct: 34  TIF--LKGCPL-----------HCAWCHNPEGISPQPQYMIKKGVKSICGYQITVEELIA 80

Query: 73  LIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           +IE+             LTGGEPL Q D    L++ L       A+ET+G
Sbjct: 81  IIEKNRDIYRLNRGGITLTGGEPLFQPDFITELLEQLPD--IHTAIETSG 128


>gi|281355779|ref|ZP_06242273.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
 gi|281318659|gb|EFB02679.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
          Length = 325

 Score = 54.3 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 14/96 (14%)

Query: 29  FSG-CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
            +G CNL            CRFC     G+         V+    L  E     +     
Sbjct: 14  LTGRCNL-----------HCRFCG-QSKGMLAAGESELPVETWLRLAREVRALADTPEPE 61

Query: 88  CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             L GGEPLL    P L + L + GF +A  TNGT+
Sbjct: 62  ITLWGGEPLLYSGFPRLARRLKEEGFRVAAVTNGTL 97


>gi|153854344|ref|ZP_01995643.1| hypothetical protein DORLON_01638 [Dorea longicatena DSM 13814]
 gi|149753119|gb|EDM63050.1| hypothetical protein DORLON_01638 [Dorea longicatena DSM 13814]
          Length = 368

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 14/92 (15%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       R+S +               G    +++     E+    G     + +LT
Sbjct: 35  CNLNCDMCYVRMSRE----------EMEEVGRLRTMEEWTKTAEDMMRAG---TLFVLLT 81

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL      L Q L + G  I + TNGT+
Sbjct: 82  GGEPLLYPHFRELYQKLRELGMIITINTNGTL 113


>gi|254519817|ref|ZP_05131873.1| pyruvate formate-lyase activating enzyme [Clostridium sp.
           7_2_43FAA]
 gi|226913566|gb|EEH98767.1| pyruvate formate-lyase activating enzyme [Clostridium sp.
           7_2_43FAA]
          Length = 237

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC L           +C +C   DT        +G  Y  ++L   I+      
Sbjct: 24  VF--FQGCKL-----------RCLYCHNPDT----WSENEGNEYTSEELVKKIKRYKSYF 66

Query: 82  EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120
              G     +GG+PL Q +  L  ++     G    ++T+G
Sbjct: 67  ATSGGGVTFSGGDPLRQPEFLLEVLKECKAEGIHTCLDTSG 107


>gi|237808650|ref|YP_002893090.1| pyruvate formate lyase II activase [Tolumonas auensis DSM 9187]
 gi|237500911|gb|ACQ93504.1| glycyl-radical enzyme activating protein family [Tolumonas auensis
           DSM 9187]
          Length = 287

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 23/122 (18%)

Query: 20  AGRVAV-FCRFSGCNL---WSGREQDRL--------SAQCRFCDTDFVGIQGTK------ 61
            G   V F    GC L   W    + R          A+C  CD     ++         
Sbjct: 31  TGIRTVVF--LKGCPLACPWCANPESRSHKVEYVIREAKCIHCDICPKTVEDCPSGAYER 88

Query: 62  -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118
            G    VD++   +++  +          ++GGE L Q    + L++ L   G   A+ET
Sbjct: 89  IGTDMTVDEVMKELKKDAVFYFTSNGGVTISGGEVLAQAPFAIELLKRLKAIGIRTAIET 148

Query: 119 NG 120
            G
Sbjct: 149 TG 150


>gi|284051128|ref|ZP_06381338.1| pyruvate formate-lyase activating enzyme [Arthrospira platensis
           str. Paraca]
          Length = 249

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 24/107 (22%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C +C   D      +   G +  V+++   + +   
Sbjct: 26  IRFVVFTQGCPL-----------RCLYCHNPD----CQEVAGGKQVTVEEIIQEVVKYRS 70

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEP 124
                     +TGGEPL+Q +    + +   + G   A++T+G I  
Sbjct: 71  YMRFSNGGITVTGGEPLMQPEFVAEIFRRCRELGIHTALDTSGYIPI 117


>gi|187736032|ref|YP_001878144.1| pyruvate formate-lyase activating enzyme [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187426084|gb|ACD05363.1| pyruvate formate-lyase activating enzyme [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 259

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 65/178 (36%), Gaps = 33/178 (18%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF    SGC           S +CR+C   DT +V     +G   + D +   I     
Sbjct: 35  IRFVLFLSGC-----------SLRCRYCHNPDTSYVR----RGRTRSADDVLKEIARYRD 79

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI------EPPQGIDWI 131
             +  G    L+GG+PL Q D    +++   K G    ++T+G +      E     D +
Sbjct: 80  FLQAAGGGVTLSGGDPLFQPDFAGAVLKGCRKLGLHTCLDTSGHLGVNAGEEMLADTDLV 139

Query: 132 CVSPKAGCDLKIKG--GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL 187
            +  KA    + +   G EL+           +     + R+ L P     LEE   L
Sbjct: 140 LLDIKAWNPKRYRALTGGELRPTLEFAE-RLASLRKPVWLRYVLVPGVTDNLEEIEEL 196


>gi|134046062|ref|YP_001097548.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanococcus maripaludis C5]
 gi|132663687|gb|ABO35333.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanococcus maripaludis C5]
          Length = 242

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 30/125 (24%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF   SGCN+  G  Q+  +               T       +++ + ++  +      
Sbjct: 28  VF--LSGCNMKCGYCQNYETI-------------TTNISEMTAEEVFNGMDLMFAES--- 69

Query: 85  GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSP 135
               V++GGEP LQ +  + L +   ++GF + ++TNGT             I++I +  
Sbjct: 70  ---LVISGGEPTLQPEAVLELAKLAKEKGFPVKLDTNGTNPDLVEKLVLNNLINYIAIDV 126

Query: 136 KAGCD 140
           KAG D
Sbjct: 127 KAGFD 131


>gi|169835621|ref|ZP_02868809.1| pyruvate formate-lyase activating enzyme [candidate division TM7
           single-cell isolate TM7a]
          Length = 223

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 63/187 (33%), Gaps = 52/187 (27%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
            A+F   SGCN+           +C +C       +     R       +       +  
Sbjct: 20  AALF--LSGCNM-----------RCGYC----HNPELVLPERLAPSIPVEEAMIFLKSRI 62

Query: 83  KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS 134
                 V++GGEP +  D+P L + +   GF++ ++TNGT             ID+I + 
Sbjct: 63  GRLDGVVISGGEPTVNEDLPVLCRMIKSLGFDVKLDTNGTHPDIVRGMVEEGTIDFIAMD 122

Query: 135 ---P-----------------KAGCDLKIKG--GQELKLVFPQVNVSPENYIGF-----D 167
              P                 KA   L I    G E +    +  +   ++         
Sbjct: 123 VKGPLEKYVEIAARPIDLMAIKANVRLMIDSGIGHEFRTTIVREQLEVADFEKIGELVKG 182

Query: 168 FERFSLQ 174
            +RF+LQ
Sbjct: 183 AKRFALQ 189


>gi|260891514|ref|ZP_05902777.1| pyruvate formate-lyase 1-activating enzyme [Leptotrichia hofstadii
           F0254]
 gi|260858897|gb|EEX73397.1| pyruvate formate-lyase 1-activating enzyme [Leptotrichia hofstadii
           F0254]
          Length = 254

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 25/135 (18%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C +C   DT        K       ++   I    +
Sbjct: 31  IRFVLFLQGCPL-----------RCLYCHNVDT---WEIKDKKMVMTAQEVMKEI--LKV 74

Query: 80  TGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKA 137
            G  +     ++GGEPL+Q    + L +   + G + A++T+G I   +    + +    
Sbjct: 75  KGFIKTGGVTVSGGEPLMQPEFLMELFKLCRENGIQTALDTSGYIFSDKAKQVLELVDMV 134

Query: 138 GCDLKIKGGQELKLV 152
             D+K    ++ K++
Sbjct: 135 LLDIKHINPEKYKIL 149


>gi|330837492|ref|YP_004412133.1| pyruvate formate-lyase activating enzyme [Spirochaeta coccoides DSM
           17374]
 gi|329749395|gb|AEC02751.1| pyruvate formate-lyase activating enzyme [Spirochaeta coccoides DSM
           17374]
          Length = 258

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 34/123 (27%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +C+FC   DT     + 
Sbjct: 13  TESFGSVDGPG---------VRFIVFMQGC-----------KMRCQFCHNPDT----WKM 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVE 117
           T G  ++ +QL    E       K+G    ++GGEPLLQ+D  L   +   +RG  I ++
Sbjct: 49  TGGTVFSSEQLLAQAERFRPYWGKDGG-ITISGGEPLLQIDFLLDFTRKAKERGINIVLD 107

Query: 118 TNG 120
           T G
Sbjct: 108 TCG 110


>gi|291565978|dbj|BAI88250.1| pyruvate formate-lyase activating enzyme [Arthrospira platensis
           NIES-39]
          Length = 255

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 24/107 (22%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C +C   D      +   G +  V+++   + +   
Sbjct: 32  IRFVVFTQGCPL-----------RCLYCHNPD----CQEVAGGKQVTVEEIIQEVVKYRS 76

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEP 124
                     +TGGEPL+Q +    + +   + G   A++T+G I  
Sbjct: 77  YMRFSNGGITVTGGEPLMQPEFVAEIFRRCRELGIHTALDTSGYIPI 123


>gi|182417137|ref|ZP_02948510.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum
           5521]
 gi|237667537|ref|ZP_04527521.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182378979|gb|EDT76485.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum
           5521]
 gi|237655885|gb|EEP53441.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 236

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC           + +C+FC   DT       + G  Y  +QL + IE+     
Sbjct: 24  VF--FQGC-----------ALRCKFCHNPDT----WTPSGGEEYTAEQLVNKIEKFKSYF 66

Query: 82  EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120
              G     +GG+PL Q +  L  ++    R     ++T+G
Sbjct: 67  AASGGGVTFSGGDPLRQPEFLLEVLKLCKSRNINTCLDTSG 107


>gi|167766973|ref|ZP_02439026.1| hypothetical protein CLOSS21_01490 [Clostridium sp. SS2/1]
 gi|167710948|gb|EDS21527.1| hypothetical protein CLOSS21_01490 [Clostridium sp. SS2/1]
 gi|291559683|emb|CBL38483.1| pyruvate formate-lyase 1-activating enzyme [butyrate-producing
           bacterium SSC/2]
          Length = 244

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 23/101 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC           + +CRFC   DT     + + G  Y  ++L   I       
Sbjct: 24  IF--LQGC-----------ALRCRFCHNPDT----WELSGGTEYTPEKLVAKIRRFKPYF 66

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
           +++G     +GGEPLLQ D     ++     G    ++T G
Sbjct: 67  KEDGG-VTFSGGEPLLQPDFLKETLKLCKNEGIHTCIDTAG 106


>gi|170756235|ref|YP_001783216.1| radical SAM domain-containing protein [Clostridium botulinum B1
           str. Okra]
 gi|169121447|gb|ACA45283.1| radical SAM domain protein [Clostridium botulinum B1 str. Okra]
          Length = 278

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 62/175 (35%), Gaps = 38/175 (21%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDT--------------DF 54
           F ++ G G      A+F  F GCN       +  +   C+ C T              D+
Sbjct: 12  FSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDY 66

Query: 55  VGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           V     K               G R     + ++I+E   T         ++GGE  LQ 
Sbjct: 67  VKWDENKCKNCGLCLKKCKNNCGPRNKYMSVGEIIKEILKTKPFISG-ITVSGGECTLQR 125

Query: 100 D--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
           D  + L + +   G  I V+TNG+++  +      +      D+K     E K++
Sbjct: 126 DFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTELMDMVMLDVKSFDSDEHKML 180


>gi|239623045|ref|ZP_04666076.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239522412|gb|EEQ62278.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridiales bacterium 1_7_47FAA]
          Length = 232

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 19/98 (19%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F    GCN            +C FC  +   +    G  Y  +++ D + ++    E 
Sbjct: 21  TIF--TGGCNF-----------RCPFC-HNSELLDSGAGEDYTEEEIFDFLHKRRGILEG 66

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
                 +TGGEP LQ D+   I+ +   G  + ++TNG
Sbjct: 67  ----VCITGGEPTLQPDLEDFIRRIRSMGLAVKLDTNG 100


>gi|169349840|ref|ZP_02866778.1| hypothetical protein CLOSPI_00578 [Clostridium spiroforme DSM 1552]
 gi|169293408|gb|EDS75541.1| hypothetical protein CLOSPI_00578 [Clostridium spiroforme DSM 1552]
          Length = 249

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 27/120 (22%)

Query: 8   EIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           E F ++ G G          R      GC L           +C++C          +  
Sbjct: 13  ESFGSVDGPG---------VRYILFLHGCPL-----------RCKYCHNPDTWANSKETM 52

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
                +  +   +       EG    ++GGEPLLQ+D  + L +   K G    ++T+G 
Sbjct: 53  EMTPQEALEKALKYKTYWGNEGG-ITISGGEPLLQIDFLIELFKLAKKEGVNTCIDTSGA 111


>gi|227486366|ref|ZP_03916682.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227235547|gb|EEI85562.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 239

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 22/105 (20%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           G   VF   SGC L           +C FC   DT  +      G    V+++       
Sbjct: 17  GIRTVFF-LSGCPL-----------RCVFCHNPDTQSLDY----GRDVTVEEIVKRALRM 60

Query: 78  WITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120
               +  G    L+GGEPL      L  I+AL+K    +AV+T+G
Sbjct: 61  KPYFKNGGG-VTLSGGEPLASGAFVLETIRALHKEAIHVAVDTSG 104


>gi|315427941|dbj|BAJ49532.1| Fe-S oxidoreductase [Candidatus Caldiarchaeum subterraneum]
          Length = 564

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L +    +R    C +C   F   +        +DQ+ +++++        G    +TGG
Sbjct: 106 LSNLVITNRCDLHCWYC--FFYAEKAGYIYEPTLDQIREMVKQLKAERPVPGNSVQITGG 163

Query: 94  EPLLQVDVP-LIQALNKRGF-EIAVETNG 120
           EP L+ D+P +I+ L + G   I + TNG
Sbjct: 164 EPCLRDDLPEIIRILKEEGVDHIQLNTNG 192


>gi|315426306|dbj|BAJ47947.1| Fe-S oxidoreductase [Candidatus Caldiarchaeum subterraneum]
          Length = 564

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L +    +R    C +C   F   +        +DQ+ +++++        G    +TGG
Sbjct: 106 LSNLVITNRCDLHCWYC--FFYAEKAGYIYEPTLDQIREMVKQLKAERPVPGNSVQITGG 163

Query: 94  EPLLQVDVP-LIQALNKRGF-EIAVETNG 120
           EP L+ D+P +I+ L + G   I + TNG
Sbjct: 164 EPCLRDDLPEIIRILKEEGVDHIQLNTNG 192


>gi|111222773|ref|YP_713567.1| MoaA/nifB/pqqE family protein [Frankia alni ACN14a]
 gi|111150305|emb|CAJ62002.1| putative MoaA / nifB / pqqE family protein; putative SAM binding
           domain [Frankia alni ACN14a]
          Length = 333

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C                R  V+Q    ++E             L 
Sbjct: 38  CNLAC--------EGCG----KIQHPADVLKQRMPVEQALAAVDECG------APVVCLA 79

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   V  +++ L KR   + + TN  +  P+ ID +  SP     + I G +E
Sbjct: 80  GGEPLMHPQVEKIVEGLVKRKKFVYLCTN-ALLIPKKIDKLTPSPYLSFAVHIDGLEE 136


>gi|254444448|ref|ZP_05057924.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198258756|gb|EDY83064.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 269

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 16/97 (16%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRY 87
              CNL            C  C +  + I  T     Y++      I+ +    E     
Sbjct: 56  TQRCNLNCPS--------C--CKSQLIPIPTTDAAENYDIKDCFKFIDSRIGLVESA--- 102

Query: 88  CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
            V+TGGEPLL  D+P L+  + KRG  + ++TNGT+ 
Sbjct: 103 -VITGGEPLLHHDLPALLAHIKKRGLSVKLDTNGTLP 138


>gi|237710986|ref|ZP_04541467.1| radical SAM domain-containing protein [Bacteroides sp. 9_1_42FAA]
 gi|265750576|ref|ZP_06086639.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229454830|gb|EEO60551.1| radical SAM domain-containing protein [Bacteroides sp. 9_1_42FAA]
 gi|263237472|gb|EEZ22922.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 367

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 9/82 (10%)

Query: 47  CRF-CDTDFVGIQGTK----GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           C F CD  ++ ++ ++    GG  ++++   + ++    G     + +LTGGEPLL  D 
Sbjct: 35  CNFRCDMCYIRMEKSQAEKRGGLRSIEEWLHIADQLQEIG---TLFILLTGGEPLLYPDF 91

Query: 102 -PLIQALNKRGFEIAVETNGTI 122
             L   L ++GF + + TN T+
Sbjct: 92  KELYIRLKEKGFILTINTNATL 113


>gi|303239826|ref|ZP_07326349.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Acetivibrio cellulolyticus CD2]
 gi|302592536|gb|EFL62261.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Acetivibrio cellulolyticus CD2]
          Length = 227

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 24/118 (20%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCN+      +R              ++G      + D++   +E++    E      V+
Sbjct: 26  GCNMDCFYCHNR------------ALVEGGHENITDADEVLSFLEKRKGFLEG----VVV 69

Query: 91  TGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSPKAGCD 140
           +GGEP LQ   +P ++ + + G+ I ++TNGT             ID+I +  KA  +
Sbjct: 70  SGGEPTLQKGLLPFLKDVKRLGYSIKLDTNGTNPDVVENVLHKGLIDYIAMDFKAPYE 127


>gi|255528600|ref|ZP_05395368.1| pyruvate formate-lyase activating enzyme [Clostridium
           carboxidivorans P7]
 gi|296185843|ref|ZP_06854249.1| pyruvate formate-lyase 1-activating enzyme [Clostridium
           carboxidivorans P7]
 gi|255507704|gb|EET84176.1| pyruvate formate-lyase activating enzyme [Clostridium
           carboxidivorans P7]
 gi|296049511|gb|EFG88939.1| pyruvate formate-lyase 1-activating enzyme [Clostridium
           carboxidivorans P7]
          Length = 240

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 25/102 (24%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC           S +C +C   DT         G     ++L   I       
Sbjct: 24  VFM--QGC-----------SLRCAYCHNPDT----WNFQGGTEITPEELVKKIARFKPYF 66

Query: 82  EKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETNG 120
           +  G     +GGEPL+Q D  LI+ L    ++G    ++T G
Sbjct: 67  KNGGG-VTFSGGEPLMQPDF-LIETLKLCKEQGIHTTIDTAG 106


>gi|154484052|ref|ZP_02026500.1| hypothetical protein EUBVEN_01761 [Eubacterium ventriosum ATCC
           27560]
 gi|149735094|gb|EDM50980.1| hypothetical protein EUBVEN_01761 [Eubacterium ventriosum ATCC
           27560]
          Length = 255

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 55/159 (34%), Gaps = 36/159 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC +           +C +C   DT         G    VD+L    E +    
Sbjct: 24  VF--FKGCPM-----------RCAYCHNPDT----WSMEGGTEMTVDELLK--EYETKKF 64

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139
             +      TGGEP++Q+D    L    +KRG    ++T+G          +   P    
Sbjct: 65  FYQSGGITATGGEPMVQIDFLTELFTEAHKRGIHTCLDTSG----------VTFRP--DD 112

Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
              +    +L  V   V +  ++    +  +   QP D 
Sbjct: 113 PENLMKVDKLLEVTDLVMLDIKHINPQEHLKLCKQPNDN 151


>gi|326790187|ref|YP_004308008.1| pyruvate formate-lyase activating enzyme [Clostridium lentocellum
           DSM 5427]
 gi|326540951|gb|ADZ82810.1| pyruvate formate-lyase activating enzyme [Clostridium lentocellum
           DSM 5427]
          Length = 241

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 22/108 (20%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC L           +C++C   DT     +   G   + ++L   I +     
Sbjct: 23  VF--TQGCPL-----------RCKYCHNPDT----WKLQDGNEADTEELITDILKYKSFM 65

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQG 127
           +       ++GGEP LQ D    L     + G    ++T+G ++    
Sbjct: 66  KASNGGVTVSGGEPFLQADFVRDLFIKCKENGLHTTIDTSGYVDIENA 113


>gi|157363297|ref|YP_001470064.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermotoga lettingae TMO]
 gi|157313901|gb|ABV33000.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermotoga lettingae TMO]
          Length = 233

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 20/102 (19%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
            VF   SGCNL           +C +C ++  V +  +        ++   I+       
Sbjct: 21  TVFI--SGCNL-----------RCPYCHNSMLVTVDKSLAQT-KWKEVLAWIKSNRKL-- 64

Query: 83  KEGRYCVLTGGEPLLQVDVPLIQAL-NKRGFEIAVETNGTIE 123
                  +TGGEP L+ D+ L+  L  + G ++ ++TNGT  
Sbjct: 65  --INAVCITGGEPTLRKDLYLMIHLAKELGIKVKLDTNGTQP 104


>gi|304314308|ref|YP_003849455.1| MoaA related protein [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587767|gb|ADL58142.1| MoaA related protein [Methanothermobacter marburgensis str.
           Marburg]
          Length = 227

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 20/93 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR+C              Y+ +++AD +    I+ E+     ++ 
Sbjct: 22  CNL-----------RCRYC-----FFTPRNCREYDAERIADRV--LRISSEEGIDSVLIA 63

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
           GGEP LQ D+P   +AL  R   + + TNGT  
Sbjct: 64  GGEPTLQRDLPEFTEAL-SRDLHVTISTNGTRW 95


>gi|220929980|ref|YP_002506889.1| pyruvate formate-lyase activating enzyme [Clostridium
           cellulolyticum H10]
 gi|220000308|gb|ACL76909.1| pyruvate formate-lyase activating enzyme [Clostridium
           cellulolyticum H10]
          Length = 240

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 27/147 (18%)

Query: 8   EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F T+ G G        VF    GC L           +C++C   D            
Sbjct: 11  ETFGTVDGPGIRFI----VF--LKGCPL-----------RCKYCHNRD----AWSSEGAK 49

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGT 121
            Y+  ++   I++     +       ++GGEPL+Q +    L +   + G   AV+T+G 
Sbjct: 50  LYSPQEVLKEIQKYRNFIDASHGGITVSGGEPLIQHEFVKELFKLCREAGIHTAVDTSGY 109

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQE 148
           +      D +  +     DLK    Q+
Sbjct: 110 VNVEDVKDTLEYTDLVLLDLKQANAQK 136


>gi|167037076|ref|YP_001664654.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320115491|ref|YP_004185650.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166855910|gb|ABY94318.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319928582|gb|ADV79267.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 228

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 30/158 (18%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
             VF   SGCN            +C +C   ++       G  +  +  D ++++    E
Sbjct: 19  ATVFV--SGCNF-----------KCPYCHNSYLIQIRE--GIRSEKEFFDYLKKRANLIE 63

Query: 83  KEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS 134
                  +TGGEP L   +   I+ +    FE+ ++TNG+             +D+I + 
Sbjct: 64  G----VCITGGEPTLWKGLKDFIKNIKDLNFEVKLDTNGSRPQVLENLLDEGLLDYIAMD 119

Query: 135 PKAGCD---LKIKGGQELKLVFPQVNVSPENYIGFDFE 169
            KA  +   + +K  +E+  V   V +   + I ++F 
Sbjct: 120 IKAPIEKYGIFLKNKKEIDNVQKSVEIIKNSDIDYEFR 157


>gi|268610302|ref|ZP_06144029.1| pyruvate formate-lyase activating enzyme [Ruminococcus flavefaciens
           FD-1]
          Length = 247

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 46/130 (35%), Gaps = 28/130 (21%)

Query: 7   KEIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
            E F T+ G G        VF  F GC L           +CR+C          + G+ 
Sbjct: 8   TESFGTVDGPGVRFV----VF--FQGCPL-----------RCRYC----HNPDTWEFGKG 46

Query: 66  NVDQLADLIEEQWITGEK-EGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN-GT 121
                 DL++E     E  +      TGGEPL Q      L      +G    ++T+ G 
Sbjct: 47  TERTAEDLMKEYDSYKEFLKSGGITATGGEPLAQPEFLAELFSLAKSKGVHTCLDTSAGV 106

Query: 122 IEPP--QGID 129
             P   + ID
Sbjct: 107 YSPEHHEAID 116


>gi|77920322|ref|YP_358137.1| pyruvate-formate lyase-activating enzyme [Pelobacter carbinolicus
           DSM 2380]
 gi|77546405|gb|ABA89967.1| pyruvate-formate lyase-activating enzyme [Pelobacter carbinolicus
           DSM 2380]
          Length = 231

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 18/100 (18%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF  F GCNL            C FC    +     +   Y ++ L + +E++    +  
Sbjct: 22  VF--FGGCNL-----------SCPFCHNPDLVQAPDRLPDYPLEPLFEELEQRRSFIDG- 67

Query: 85  GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
               V++GGEP L  D+ P ++ + + G  + ++TNG + 
Sbjct: 68  ---VVISGGEPTLYPDLIPFMRRIKQLGLMVKLDTNGLLP 104


>gi|302384615|ref|YP_003820437.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium saccharolyticum WM1]
 gi|302195243|gb|ADL02814.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium saccharolyticum WM1]
          Length = 231

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 30/128 (23%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG--IQGTKGGRYNVDQLADLIEEQWIT 80
             VF    GCN            +C FC        I       Y+ ++L + +  +   
Sbjct: 20  ATVF--LGGCNF-----------RCPFC---HNSGLIGSEAKSEYSKEELLNFLSRRKGI 63

Query: 81  GEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG-------TIEPPQGIDWIC 132
            E       +TGGEP L  D+   I+ + + G+ I ++TNG        +     +D++ 
Sbjct: 64  LEG----VCITGGEPTLSEDLESFIRNIRELGYLIKLDTNGYRPDVLKRLAANGLLDYVA 119

Query: 133 VSPKAGCD 140
           +  KAG D
Sbjct: 120 MDIKAGRD 127


>gi|325843173|ref|ZP_08167859.1| glycine radical enzyme activase, YjjW family [Turicibacter sp.
           HGF1]
 gi|325489417|gb|EGC91787.1| glycine radical enzyme activase, YjjW family [Turicibacter sp.
           HGF1]
          Length = 275

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 57/180 (31%), Gaps = 47/180 (26%)

Query: 1   MKLYSIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ------------ 46
           MK Y + +I  F ++ G G      A+F    GCN       +  +              
Sbjct: 1   MKGY-LNKIIPFSSVDGPGNRT---AIF--LQGCNFDCVYCHNPETINHCINCSMCVSAC 54

Query: 47  ------------------CRFCD--TDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEG 85
                             C  CD  T       T   +    D + + I       +   
Sbjct: 55  PVQALSRVDRLVKFDVSKCVECDACTKKCHRNSTPKYKLLTADDIMNDIMNYRPFIQG-- 112

Query: 86  RYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143
               ++GGE  LQ    + L +   + G    ++TNG+ +     D + ++     D+K+
Sbjct: 113 --ITVSGGECTLQAPFLIELFKKAKEAGLTCFIDTNGSTDLSLHHDLMSLTDGVMLDVKV 170


>gi|218135329|ref|ZP_03464133.1| hypothetical protein BACPEC_03234 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990714|gb|EEC56725.1| hypothetical protein BACPEC_03234 [Bacteroides pectinophilus ATCC
           43243]
          Length = 248

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 34/122 (27%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F ++ G G          RF     GC++           +C+FC   DT        
Sbjct: 8   ESFGSVDGPG---------VRFVIFTQGCHM-----------RCQFCHNPDT----WNME 43

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
            G   + D L            K      ++GGEPLLQ+D  + L      +G    ++T
Sbjct: 44  DGEEMSADDLLKQALRYKSY-WKNKGGITVSGGEPLLQMDFLIELFTKAKAKGVNTTLDT 102

Query: 119 NG 120
           +G
Sbjct: 103 SG 104


>gi|291287831|ref|YP_003504647.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884991|gb|ADD68691.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 229

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 60/155 (38%), Gaps = 33/155 (21%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI-TGEKEGRY 87
           F+GCNL           +CR+C               N     + +EE       K+   
Sbjct: 27  FNGCNL-----------RCRYC---------HNPELVNSALGENRLEEFLSSLEGKDIEG 66

Query: 88  CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSPKAGC 139
             ++GGEPL   D+P  ++ L  RGF + ++TNG+              D++ V  KA  
Sbjct: 67  VAVSGGEPLFLPDMPEFLRTLKDRGFLVKLDTNGSYPGRLERVCGEGLADFVSVDLKAFN 126

Query: 140 DLKIK----GGQELKLVFPQVNVSPENYIGFDFER 170
           D  +K        +      ++V  E+ +GF+   
Sbjct: 127 DSDVKEITRSNYGIDKFIKTIDVLREHKVGFEVRH 161


>gi|257126654|ref|YP_003164768.1| pyruvate formate-lyase activating enzyme [Leptotrichia buccalis
           C-1013-b]
 gi|257050593|gb|ACV39777.1| pyruvate formate-lyase activating enzyme [Leptotrichia buccalis
           C-1013-b]
          Length = 254

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 25/135 (18%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C +C   DT        K       ++   I    +
Sbjct: 31  IRFVLFLQGCPL-----------RCLYCHNVDT---WEIKDKKMIMTASEVMKEI--LKV 74

Query: 80  TGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKA 137
            G  +     ++GGEPL+Q    + L +   + G + A++T+G I   +    + +    
Sbjct: 75  RGFIKTGGVTVSGGEPLMQPEFLMELFKLCRENGIQTALDTSGYIFSDKAKQVLELVDMV 134

Query: 138 GCDLKIKGGQELKLV 152
             D+K    ++ K++
Sbjct: 135 LLDIKHINPEKYKIL 149


>gi|224540997|ref|ZP_03681536.1| hypothetical protein CATMIT_00148 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526052|gb|EEF95157.1| hypothetical protein CATMIT_00148 [Catenibacterium mitsuokai DSM
           15897]
          Length = 308

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 51/149 (34%), Gaps = 54/149 (36%)

Query: 15  GEGGHAGRVAVFCRFSGCNLWSGREQDRLSA--------------QCR------------ 48
           GEG       VF  F GC L     Q+                   CR            
Sbjct: 27  GEGLRT---TVF--FKGCPLRCRWCQNPEGLLPQRKPIYLENKCMHCRNCEKQGAGKIVY 81

Query: 49  ----------------FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
                           +C TD +    +    Y++++L D + E  +  +  G    ++G
Sbjct: 82  QDRPVFIEDDLDEVFKYCPTDAIQYDSSY---YSLEELVDKVMEDEVFFKYGGG-VTVSG 137

Query: 93  GEPLLQVDVPLIQALNKRGFEIA--VETN 119
           GEP +Q +  LIQ L +   ++   +ET+
Sbjct: 138 GEPFMQQE-KLIQLLKELHPKVHTAIETS 165


>gi|52080502|ref|YP_079293.1| putative pyruvate formate-lyase-activating enzyme [Bacillus
           licheniformis ATCC 14580]
 gi|52785882|ref|YP_091711.1| hypothetical protein BLi02131 [Bacillus licheniformis ATCC 14580]
 gi|319645536|ref|ZP_07999768.1| hypothetical protein HMPREF1012_00801 [Bacillus sp. BT1B_CT2]
 gi|52003713|gb|AAU23655.1| putative Pyruvate formate-lyase-activating enzyme [Bacillus
           licheniformis ATCC 14580]
 gi|52348384|gb|AAU41018.1| putative protein [Bacillus licheniformis ATCC 14580]
 gi|317392422|gb|EFV73217.1| hypothetical protein HMPREF1012_00801 [Bacillus sp. BT1B_CT2]
          Length = 252

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 25/118 (21%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
           E F T+ G G    R  VF    GC             +C+FC   DT  +G     G +
Sbjct: 9   ETFGTVDGPGI---RYVVF--TQGC-----------LMRCQFCHNADTWEIGT----GKQ 48

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
             V ++   ++      +  G    ++GGEPLLQ+   + L +A    G   A++++G
Sbjct: 49  MTVSEIVQDVQHYLPFIQSSGGGITVSGGEPLLQLPFLIELFKACKSLGIHTALDSSG 106


>gi|16272464|ref|NP_438678.1| hypothetical protein HI0520 [Haemophilus influenzae Rd KW20]
 gi|260580967|ref|ZP_05848790.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|1175257|sp|P44743|Y520_HAEIN RecName: Full=Uncharacterized protein HI_0520
 gi|1573503|gb|AAC22178.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260092326|gb|EEW76266.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
          Length = 262

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 43/194 (22%)

Query: 3   LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51
           + ++ EIF+ L           QG      R ++F    GC L            C +C 
Sbjct: 1   MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42

Query: 52  TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109
                 + T+  +         + EQ +      R   ++GGEP +     VPL +AL  
Sbjct: 43  NPETIPRYTESAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99

Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ------ELKL---VFPQVNVSP 160
           +G    ++++G  E  +    I V+ K   DLK +G        + K    + PQ  +  
Sbjct: 100 QGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLKGEGIGLQTLCFDRKNQAGIVPQQVIPE 159

Query: 161 ENYIGFDFERFSLQ 174
             +I  D    +LQ
Sbjct: 160 RLHIKNDKLERNLQ 173


>gi|145640496|ref|ZP_01796080.1| purine nucleoside phosphorylase [Haemophilus influenzae R3021]
 gi|145275082|gb|EDK14944.1| purine nucleoside phosphorylase [Haemophilus influenzae 22.4-21]
          Length = 262

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 73/195 (37%), Gaps = 45/195 (23%)

Query: 3   LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51
           + ++ EIF+ L           QG      R ++F    GC L            C +C 
Sbjct: 1   MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42

Query: 52  TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109
                 + T+  +         + EQ +      R   ++GGEP +     VPL +AL  
Sbjct: 43  NPETIPRYTESAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99

Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL----------VFPQVNVS 159
           +G    ++++G  E  +    I V+ K   DLK +G   L++          + PQ  + 
Sbjct: 100 KGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLKGEGIG-LQILCFDRKNQAGIVPQQVIL 158

Query: 160 PENYIGFDFERFSLQ 174
              +I  D    +LQ
Sbjct: 159 ERLHIKNDKLERNLQ 173


>gi|209524594|ref|ZP_03273142.1| pyruvate formate-lyase activating enzyme [Arthrospira maxima
           CS-328]
 gi|209495052|gb|EDZ95359.1| pyruvate formate-lyase activating enzyme [Arthrospira maxima
           CS-328]
          Length = 249

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 24/107 (22%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C +C   D      +   G + +V+++   + +   
Sbjct: 26  IRFVVFTQGCPL-----------RCLYCHNPD----CQEVAGGQQVSVEEIIQQVVKYRS 70

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEP 124
                     +TGGEPL+Q +    + +   + G   A++T+G I  
Sbjct: 71  YMRFSNGGITVTGGEPLMQPEFVAEIFRRCRELGIHTALDTSGYIPL 117


>gi|150400948|ref|YP_001324714.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanococcus aeolicus Nankai-3]
 gi|150013651|gb|ABR56102.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanococcus aeolicus Nankai-3]
          Length = 245

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 28/125 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF   SGCN+            C +C      +  T+    +  ++ D I+  +      
Sbjct: 22  VF--LSGCNML-----------CGYCHNYEHMLDNTRNIDMSPKEVFDKIDLIFADA--- 65

Query: 85  GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT-IEPPQG------IDWICVSP 135
               V++GGEP LQ +    L +     G  + ++TNGT ++  +       ID+I +  
Sbjct: 66  ---LVISGGEPTLQPEGVKELCKLAKNEGLAVKLDTNGTSVDIVKDIIDNKLIDYIALDV 122

Query: 136 KAGCD 140
           K G D
Sbjct: 123 KCGFD 127


>gi|326202609|ref|ZP_08192477.1| pyruvate formate-lyase activating enzyme [Clostridium papyrosolvens
           DSM 2782]
 gi|325987193|gb|EGD48021.1| pyruvate formate-lyase activating enzyme [Clostridium papyrosolvens
           DSM 2782]
          Length = 240

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 27/119 (22%)

Query: 8   EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F T+ G G        VF    GC L           +C++C   D            
Sbjct: 11  ETFGTVDGPGIRFI----VF--LKGCPL-----------RCKYCHNRD----AWSSEGAK 49

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
            Y   ++   + +     E       ++GGEPL+Q D    L +   + G   AV+T+G
Sbjct: 50  LYTPQEVMKELLKYKNFIEASHGGITVSGGEPLIQQDFVRELFKLCREAGIHTAVDTSG 108


>gi|145637441|ref|ZP_01793100.1| hypothetical protein CGSHiHH_06086 [Haemophilus influenzae PittHH]
 gi|145269387|gb|EDK09331.1| hypothetical protein CGSHiHH_06086 [Haemophilus influenzae PittHH]
          Length = 262

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 43/194 (22%)

Query: 3   LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51
           + ++ EIF+ L           QG      R ++F    GC L            C +C 
Sbjct: 1   MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42

Query: 52  TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109
                 + T+  +         + EQ +      R   ++GGEP +     VPL +AL  
Sbjct: 43  NPETIPRYTESAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99

Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ------ELKL---VFPQVNVSP 160
           +G    ++++G  E  +    I V+ K   DLK +G        + K    + PQ  +  
Sbjct: 100 QGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLKGEGIGLQTLCFDRKNQAGIVPQQVIPK 159

Query: 161 ENYIGFDFERFSLQ 174
             +I  D    +LQ
Sbjct: 160 RLHIKNDKLERNLQ 173


>gi|260582776|ref|ZP_05850563.1| pyruvate-formate lyase-activating enzyme [Haemophilus influenzae
           NT127]
 gi|260094226|gb|EEW78127.1| pyruvate-formate lyase-activating enzyme [Haemophilus influenzae
           NT127]
          Length = 262

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 43/194 (22%)

Query: 3   LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51
           + ++ EIF+ L           QG      R ++F    GC L            C +C 
Sbjct: 1   MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42

Query: 52  TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109
                 + T+  +         + EQ +      R   ++GGEP +     VPL +AL  
Sbjct: 43  NPETIPRYTESAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99

Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ------ELKL---VFPQVNVSP 160
           +G    ++++G  E  +    I V+ K   DLK +G        + K    + PQ  +  
Sbjct: 100 QGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLKGEGIGLQTLCFDRKNQAGIVPQQVILE 159

Query: 161 ENYIGFDFERFSLQ 174
             +I  D    +LQ
Sbjct: 160 RLHIKNDKLERNLQ 173


>gi|257470672|ref|ZP_05634762.1| pyruvate-formate lyase-activating enzyme [Fusobacterium ulcerans
           ATCC 49185]
 gi|317064878|ref|ZP_07929363.1| pyruvate-formate lyase-activating enzyme [Fusobacterium ulcerans
           ATCC 49185]
 gi|313690554|gb|EFS27389.1| pyruvate-formate lyase-activating enzyme [Fusobacterium ulcerans
           ATCC 49185]
          Length = 243

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 65/178 (36%), Gaps = 36/178 (20%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           E F T+ G G          RF     GC L           +C+FC          +  
Sbjct: 11  ESFGTVDGPG---------IRFVLFLQGCPL-----------RCKFCHNPDTWNMSEEKI 50

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
           +    +  + + +      K+G    +TGGEPLLQ D  + L +   + G    V+T+G 
Sbjct: 51  KEEATETFEKVRKYKGYFGKKGGL-TVTGGEPLLQADFVLELFKLCKEDGINTVVDTSGY 109

Query: 122 I------EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
           I      E  +  D + +  KA  +   K   EL  V  +  +    Y+    ++  +
Sbjct: 110 IFNEKVKEVLEYTDLVLLDIKAIDEKVYK---ELTGVELENTLKFAQYLKEKGKKVWI 164


>gi|51850059|dbj|BAD42364.1| putative benzylsuccinate synthase activating enzyme
           [Magnetospirillum sp. TS-6]
          Length = 319

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 54/173 (31%), Gaps = 60/173 (34%)

Query: 1   MKLYSIKEI--FLTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------Q 46
           MK+  I EI  F +LQ G G       +F    GC L      +  +            +
Sbjct: 1   MKIPLITEIQRF-SLQDGPGIRT---TIF--LKGCPLRCPWCHNPETQDTRREMFYYENR 54

Query: 47  CRFC---------------DTD-----------------------FVGIQGTKGGRYNVD 68
           C  C               DT                            +G  G    VD
Sbjct: 55  CVGCGRCVAVCSTGASTLVDTGGKSPTLVVNRDKCDRCLRCAAVCLTEARGISGQAMTVD 114

Query: 69  QLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
           ++           +  G    L+GG+PL+  +  + L + L+  G  +A+ET+
Sbjct: 115 EILREALSDKPFYKNSGGGVTLSGGDPLMYPEFVLELARRLHDEGVHLAMETS 167


>gi|164687599|ref|ZP_02211627.1| hypothetical protein CLOBAR_01240 [Clostridium bartlettii DSM
           16795]
 gi|164603373|gb|EDQ96838.1| hypothetical protein CLOBAR_01240 [Clostridium bartlettii DSM
           16795]
          Length = 248

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 27/123 (21%)

Query: 8   EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F T+ G G  +     +F  F GC L           +C++C   DT     +   G 
Sbjct: 10  ETFGTVDGPGIRYI----IF--FQGCPL-----------RCKYCHNRDT----WKTNCGK 48

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
            Y VD+LA  I +     +  G     +GGE  LQ +    L     + G    ++T G 
Sbjct: 49  EYTVDELAQDIMKYQTYMQFSGGGVTASGGEATLQAEFVTELFAKCKELGIHTCLDTAGF 108

Query: 122 IEP 124
           ++ 
Sbjct: 109 VDI 111


>gi|262038411|ref|ZP_06011785.1| pyruvate formate-lyase 1-activating enzyme [Leptotrichia
           goodfellowii F0264]
 gi|261747506|gb|EEY34971.1| pyruvate formate-lyase 1-activating enzyme [Leptotrichia
           goodfellowii F0264]
          Length = 241

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 25/103 (24%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C +C   DT        K      +++   I    +
Sbjct: 19  IRFVLFMQGCPL-----------RCLYCHNVDT---WNVKDKKFMMTPEEVMKEI--LKV 62

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
            G        ++GGEPLLQ +    L +   +     AV+T+G
Sbjct: 63  KGFIRTGGVTVSGGEPLLQPEFITELFKLCKENDIHTAVDTSG 105


>gi|114566578|ref|YP_753732.1| pyruvate formate lyase activating enzyme [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114337513|gb|ABI68361.1| pyruvate formate lyase activating enzyme [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 246

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 25/122 (20%)

Query: 5   SIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            I  I  F TL G G       VF    GC+L           +C++C   DT    ++ 
Sbjct: 4   RIHSIDTFSTLDGPGIRT---VVFM--QGCHL-----------RCKYCHNPDT--WELKS 45

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALN-KRGFEIAVE 117
                Y+ ++L ++I          G     +GGEPLL  D +  +  L  +     A++
Sbjct: 46  LSAQEYSPEELMEVIRRSKPYFIASGGGLTFSGGEPLLHDDFIKAVFLLCREENISTAID 105

Query: 118 TN 119
           T+
Sbjct: 106 TS 107


>gi|91225254|ref|ZP_01260422.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus
           12G01]
 gi|91189893|gb|EAS76165.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus
           12G01]
          Length = 246

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 53/162 (32%), Gaps = 36/162 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT         G    V+++    +      
Sbjct: 25  VF--LQGC-----------LMRCKYCHNRDT----WDTHDGKEVTVEEIISEAKSYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWICVS 134
              G     +GGE +LQ +      +A    G    ++TNG     T    + +D     
Sbjct: 68  NASGGGVTCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYVRKHTDVIDEVLD----- 122

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
                DL +   + +K    Q  +   N    DF R  LQ +
Sbjct: 123 ---ATDLVMLDIKHMKDEVHQDLIGVSNRRTLDFAR-YLQKI 160


>gi|293375016|ref|ZP_06621309.1| putative pyruvate formate-lyase-activating enzyme [Turicibacter
           sanguinis PC909]
 gi|292646354|gb|EFF64371.1| putative pyruvate formate-lyase-activating enzyme [Turicibacter
           sanguinis PC909]
          Length = 275

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 57/180 (31%), Gaps = 47/180 (26%)

Query: 1   MKLYSIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ------------ 46
           MK Y + +I  F ++ G G      A+F    GCN       +  +              
Sbjct: 1   MKGY-LNKIIPFSSVDGPGNRT---AIF--LQGCNFECVYCHNPETINHCINCSMCVSAC 54

Query: 47  ------------------CRFCD--TDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEG 85
                             C  CD  T       T   +    D + + I       +   
Sbjct: 55  PVQALSRVDRLVKFDVSKCVECDACTKKCHRNSTPKYKLLTADDIMNDIMNYRPFIQG-- 112

Query: 86  RYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143
               ++GGE  LQ    + L +   + G    ++TNG+ +     D + ++     D+K+
Sbjct: 113 --ITVSGGECTLQAPFLIELFKKAKEAGLTCFIDTNGSTDLSLQHDLMSLTDGVMLDVKV 170


>gi|83592610|ref|YP_426362.1| radical SAM family protein [Rhodospirillum rubrum ATCC 11170]
 gi|83575524|gb|ABC22075.1| Radical SAM [Rhodospirillum rubrum ATCC 11170]
          Length = 232

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 39/125 (31%), Gaps = 24/125 (19%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
              VF R  GC             +C +C        G  G R   D   + +     + 
Sbjct: 23  VATVFLR--GCP-----------WRCPYC-----HNPGLLGARDPSDPAWEDVFGFLQSR 64

Query: 82  EKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSP 135
                  V +GGEP  Q  +   I A    GF + + T G            +DW+    
Sbjct: 65  RGLLDGVVFSGGEPTTQGGLGAAIDAARGLGFRVGLHTGGAFPDRLAALLPHLDWVGFDV 124

Query: 136 KAGCD 140
           KA  D
Sbjct: 125 KAPFD 129


>gi|251799217|ref|YP_003013948.1| pyruvate formate-lyase activating enzyme [Paenibacillus sp. JDR-2]
 gi|247546843|gb|ACT03862.1| pyruvate formate-lyase activating enzyme [Paenibacillus sp. JDR-2]
          Length = 244

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 57/152 (37%), Gaps = 29/152 (19%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC           + QC+FC   DT         G +  VD + + IE    
Sbjct: 19  IRFVLFMQGC-----------ALQCQFCHNPDT----WDTAAGRQVTVDDILEEIEPYLP 63

Query: 80  TGEKEGRYCVLTGGEPLLQVDVPLIQAL-----NKRGFEIAVETNGTIEPPQGIDWICVS 134
                G    +TGGEP LQ   P + AL      K G   A++++G  +P    + +  +
Sbjct: 64  YYRGSGGGITVTGGEPTLQA--PFVAALFKACKEKYGLHTALDSSGFCDPSHASELMNDT 121

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
                DLK     + + +  Q N    ++  +
Sbjct: 122 DLVLLDLKQIDRDKHERLTSQPNDRILHFAKW 153


>gi|18313817|ref|NP_560484.1| molybdenum cofactor biosynthesis protein (moaA) [Pyrobaculum
           aerophilum str. IM2]
 gi|18161379|gb|AAL64666.1| molybdenum cofactor biosynthesis protein (moaA) [Pyrobaculum
           aerophilum str. IM2]
          Length = 254

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 18/145 (12%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL  G      +       T FV    T G      ++A  + E  I   K  +   +
Sbjct: 46  GCNLRCGMCWAWRN-------TSFVL---TAGAWMAPHEVAARLRE--IAKSKGFQQVRI 93

Query: 91  TGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           +GGEPL+     + +I  L++  +   VETNG +        +   P A   + IKG   
Sbjct: 94  SGGEPLIAPEHLLEVIDLLSE--YTFVVETNGVLINRNLAKELASRPNAVVRVSIKGATP 151

Query: 149 LKLVFPQVNVSPENYIGFDFERFSL 173
            + V  ++ +SP  Y     E   L
Sbjct: 152 EEFV--KITMSPSFYFYRQLEALRL 174


>gi|325263807|ref|ZP_08130540.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp.
           D5]
 gi|324030845|gb|EGB92127.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp.
           D5]
          Length = 288

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQL-ADLIEEQWITGE---KEGR 86
           C   + R++    A CR C       +  TKG R + +++  D + E+ I       +G 
Sbjct: 57  CPHHAIRDKQLDRAVCRECKGRECVTEHRTKGIRLSYEEIEVDALVEEIIGNSPMFYDGG 116

Query: 87  YCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIE 123
               TGGE  LQ D  L  ++ L   G   AVETNG   
Sbjct: 117 GVTFTGGEATLQFDELLEALKRLTAAGIHTAVETNGAHP 155


>gi|254229008|ref|ZP_04922429.1| pyruvate formate-lyase 1-activating enzyme [Vibrio sp. Ex25]
 gi|262394749|ref|YP_003286603.1| pyruvate formate-lyase activating enzyme [Vibrio sp. Ex25]
 gi|151938476|gb|EDN57313.1| pyruvate formate-lyase 1-activating enzyme [Vibrio sp. Ex25]
 gi|262338343|gb|ACY52138.1| pyruvate formate-lyase activating enzyme [Vibrio sp. Ex25]
          Length = 246

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 53/162 (32%), Gaps = 36/162 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT         G    V+++    +      
Sbjct: 25  VF--LQGC-----------LMRCKYCHNRDT----WDTHDGKEVTVEEIISEAKSYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWICVS 134
              G     +GGE +LQ +      +A    G    ++TNG     T    + +D     
Sbjct: 68  NASGGGVTCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYVRKHTDVIDEVLD----- 122

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
                DL +   + +K    Q  +   N    DF R  LQ +
Sbjct: 123 ---ATDLVMLDIKHMKDEVHQDLIGVSNRRTLDFAR-YLQKI 160


>gi|227503993|ref|ZP_03934042.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
           striatum ATCC 6940]
 gi|227199387|gb|EEI79435.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
           striatum ATCC 6940]
          Length = 289

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 30/141 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ +F   SGC L           +C++C   DT    ++   G    ++ +   I+   
Sbjct: 67  RMTMFM--SGCPL-----------RCQYCHNPDT----MEMKVGTLERIEDVVKRIKRYK 109

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTI------EPPQGIDW 130
              +  G    ++GGEPL Q+     +++ ++  G    ++T+G +      E  + ID 
Sbjct: 110 PIFKASGGGLTISGGEPLFQIAFTRRVLKEVHDAGIHTTIDTSGFLGSRLRDEDLENIDL 169

Query: 131 ICVSPKAGCD--LKIKGGQEL 149
           + +  K+G +   K+   +EL
Sbjct: 170 VLLDVKSGDEETYKLVTRREL 190


>gi|227503005|ref|ZP_03933054.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
           accolens ATCC 49725]
 gi|306836762|ref|ZP_07469723.1| pyruvate formate-lyase activating enzyme [Corynebacterium accolens
           ATCC 49726]
 gi|227076066|gb|EEI14029.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
           accolens ATCC 49725]
 gi|304567349|gb|EFM42953.1| pyruvate formate-lyase activating enzyme [Corynebacterium accolens
           ATCC 49726]
          Length = 289

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 28/128 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ +F   SGC L           +C++C   DT    ++   G    VD +   I+   
Sbjct: 67  RMTMFM--SGCPL-----------RCQYCHNPDT----MEMKTGTLERVDDVVKRIKRYK 109

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTI------EPPQGIDW 130
              +  G    ++GGEPL Q+     +++ ++  G    ++T+G +      E    ID 
Sbjct: 110 PIFQASGGGLTISGGEPLFQIAFTRRVLKEVHDAGIHTTIDTSGFLGSRLRDEDLDNIDL 169

Query: 131 ICVSPKAG 138
           + +  K+G
Sbjct: 170 VLLDVKSG 177


>gi|167462221|ref|ZP_02327310.1| hypothetical protein Plarl_06640 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 247

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 58/173 (33%), Gaps = 34/173 (19%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F T+ G G          RF     GC           + QC+FC   DT        
Sbjct: 9   ETFGTVDGPG---------IRFVLFLQGC-----------ALQCQFCHNADT----WDTG 44

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKR-GFEIAVE 117
            G    V+++   IE              +TGGEP LQ      L +A   R      ++
Sbjct: 45  GGKVMEVEEILAEIESYLPYYRSSNGGITVTGGEPTLQAHFVAELFKACKSRFQLHTTLD 104

Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
           ++G  E     D + V+     DLKI   ++   +  Q N        +  + 
Sbjct: 105 SSGFCEIDNVQDLMDVTDLVLLDLKIIDREKHIRLTSQPNDRILKTAKWLSDH 157


>gi|294102548|ref|YP_003554406.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Aminobacterium colombiense DSM 12261]
 gi|293617528|gb|ADE57682.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Aminobacterium colombiense DSM 12261]
          Length = 229

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 34/123 (27%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY--- 87
           GCN            +C +C       +  +GG  N       + E+      E R    
Sbjct: 26  GCNF-----------RCPYC----QNPELVEGGEIN------FLSEEGFFNFLERRIGLL 64

Query: 88  --CVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVSPKA 137
              V+TGGEP LQ D +P I+ +   GF + ++TNG+             +D++ +  KA
Sbjct: 65  DGVVITGGEPTLQPDLLPFIEKVKNMGFLVKLDTNGSDPKGLQSFIGKDLVDYVAMDVKA 124

Query: 138 GCD 140
             +
Sbjct: 125 SPE 127


>gi|148825204|ref|YP_001289957.1| hypothetical protein CGSHiEE_00400 [Haemophilus influenzae PittEE]
 gi|229846603|ref|ZP_04466711.1| hypothetical protein CGSHi7P49H1_08020 [Haemophilus influenzae
           7P49H1]
 gi|148715364|gb|ABQ97574.1| hypothetical protein CGSHiEE_00400 [Haemophilus influenzae PittEE]
 gi|229810696|gb|EEP46414.1| hypothetical protein CGSHi7P49H1_08020 [Haemophilus influenzae
           7P49H1]
          Length = 262

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 43/194 (22%)

Query: 3   LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51
           + ++ EIF+ L           QG      R ++F    GC L            C +C 
Sbjct: 1   MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42

Query: 52  TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109
                 + T+  +         + EQ +      R   ++GGEP +     VPL +AL  
Sbjct: 43  NPETIPRYTENAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99

Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ------ELKL---VFPQVNVSP 160
           +G    ++++G  E  +    I V+ K   DLK +G        + K    + PQ  +  
Sbjct: 100 QGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLKGEGIGLQTLCFDRKNQAGIVPQQVILE 159

Query: 161 ENYIGFDFERFSLQ 174
             +I  D    +LQ
Sbjct: 160 RLHIKNDKLERNLQ 173


>gi|332179017|gb|AEE14706.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 229

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 8/99 (8%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L +    +R + +C +C  +F  +        N+D++   +E+      K+    V++GG
Sbjct: 17  LSTVLFTERCNFRCPYC-HNFDLVLPNNLETINIDEILSFLEK----RRKKLDAVVISGG 71

Query: 94  EPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
           EPLL        I+ + + GF I ++TNG+  P +  DW
Sbjct: 72  EPLLHGKELEDFIKKVREMGFLIKIDTNGSF-PEKVFDW 109


>gi|323694204|ref|ZP_08108380.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium symbiosum WAL-14673]
 gi|323501677|gb|EGB17563.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium symbiosum WAL-14673]
          Length = 236

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 26/102 (25%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
             +F    GCN            +C FC   D     ++GT G  ++ +++   ++++  
Sbjct: 26  ATIF--LGGCNF-----------RCPFCHNSD----LLEGTDG-LFSKEEVLTFLKKRAG 67

Query: 80  TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
             E       +TGGEP L  D+ P I+ +   G  + ++TNG
Sbjct: 68  ILEG----VCITGGEPTLHRDLEPFIREIRSLGLLVKLDTNG 105


>gi|322807903|emb|CBZ05478.1| radical activating enzyme [Clostridium botulinum H04402 065]
          Length = 278

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 63/175 (36%), Gaps = 38/175 (21%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDT--------------DF 54
           F ++ G G      A+F  F GCN       +  +   C+ C T              D 
Sbjct: 12  FSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDS 66

Query: 55  VGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           V     K               G R     + ++I+E   T         ++GGE  LQ 
Sbjct: 67  VKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKEILKTKPFISG-ITVSGGECTLQR 125

Query: 100 D--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
           D  + L + +   G  I V+TNG+++  +    I +   A  D+K     E K++
Sbjct: 126 DFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLIELMDMAMLDVKSFDSDEHKML 180


>gi|300935958|ref|ZP_07150911.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 21-1]
 gi|300949389|ref|ZP_07163398.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 116-1]
 gi|300451204|gb|EFK14824.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 116-1]
 gi|300458894|gb|EFK22387.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 21-1]
 gi|315286769|gb|EFU46188.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 110-3]
          Length = 200

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           KG R +V  +   +E++     + G    L+GGEPL Q +    L++A   +G+  A+ET
Sbjct: 2   KGKRMSVTAVMRELEKEENLYRRSGGGITLSGGEPLAQPEFARELLKACKAKGWHTAIET 61

Query: 119 NG 120
           +G
Sbjct: 62  SG 63


>gi|309972329|gb|ADO95530.1| Conserved hypothetical protein [Haemophilus influenzae R2846]
          Length = 262

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 43/194 (22%)

Query: 3   LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51
           + ++ EIF+ L           QG      R ++F    GC L            C +C 
Sbjct: 1   MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42

Query: 52  TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109
                 + T+  +         + EQ +      R   ++GGEP +     VPL +AL  
Sbjct: 43  NPETIPRYTENAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99

Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ------ELKL---VFPQVNVSP 160
           +G    ++++G  E  +    I V+ K   DLK +G        + K    + PQ  +  
Sbjct: 100 QGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLKGEGIGLQTLCFDRKNQAGIVPQQVILE 159

Query: 161 ENYIGFDFERFSLQ 174
             +I  D    +LQ
Sbjct: 160 RLHIKNDKLERNLQ 173


>gi|145628901|ref|ZP_01784701.1| purine nucleoside phosphorylase [Haemophilus influenzae 22.1-21]
 gi|145638565|ref|ZP_01794174.1| predicted pyruvate-formate lyase-activating enzyme [Haemophilus
           influenzae PittII]
 gi|144979371|gb|EDJ89057.1| purine nucleoside phosphorylase [Haemophilus influenzae 22.1-21]
 gi|145272160|gb|EDK12068.1| predicted pyruvate-formate lyase-activating enzyme [Haemophilus
           influenzae PittII]
 gi|309750069|gb|ADO80053.1| Conserved hypothetical protein [Haemophilus influenzae R2866]
          Length = 262

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 34/153 (22%)

Query: 3   LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51
           + ++ EIF+ L           QG      R ++F    GC L            C +C 
Sbjct: 1   MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42

Query: 52  TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109
                 + T+  +         + EQ +      R   ++GGEP +     VPL +AL  
Sbjct: 43  NPETIPRYTESAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99

Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
           +G    ++++G  E  +    I V+ K   DLK
Sbjct: 100 QGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLK 132


>gi|119946914|ref|YP_944594.1| pyruvate formate lyase-activating enzyme 1 [Psychromonas ingrahamii
           37]
 gi|119865518|gb|ABM04995.1| pyruvate formate-lyase activating enzyme [Psychromonas ingrahamii
           37]
          Length = 246

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT         G   +V++L   + +     
Sbjct: 25  IF--LQGC-----------LMRCQYCHNRDT----WDTEAGKEMSVEELMAELLQYRHYM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
           E  G    ++GGE +LQ +    + +A +  G    ++TNG
Sbjct: 68  EASGGGITVSGGEAMLQPEFIKAIFEACHLEGIHTCLDTNG 108


>gi|319897966|ref|YP_004136163.1| pyruvate-formate lyase-activating enzyme [Haemophilus influenzae
           F3031]
 gi|317433472|emb|CBY81855.1| Predicted pyruvate-formate lyase-activating enzyme [Haemophilus
           influenzae F3031]
          Length = 262

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 43/194 (22%)

Query: 3   LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51
           + ++ EIF+ L           QG      R ++F    GC L            C +C 
Sbjct: 1   MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42

Query: 52  TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109
                 + T+  +         + EQ +      R   ++GGEP +     VPL +AL  
Sbjct: 43  NPETIPRYTENAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99

Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ------ELKL---VFPQVNVSP 160
           +G    ++++G  E  +    I V+ K   DLK +G        + K    + PQ  +  
Sbjct: 100 QGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLKGEGIGLQTLCFDRKNQAGIVPQQVILE 159

Query: 161 ENYIGFDFERFSLQ 174
             +I  D    +LQ
Sbjct: 160 RLHIKNDKLERNLQ 173


>gi|257125870|ref|YP_003163984.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Leptotrichia buccalis C-1013-b]
 gi|257049809|gb|ACV38993.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Leptotrichia buccalis C-1013-b]
          Length = 153

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 32/136 (23%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           R+ VF  F GCN+      +                    G  Y V +L D I    +  
Sbjct: 20  RLTVF--FQGCNVKCKGCHNSEIQ------------DIRTGREYEVKKLCDEIMSYNL-- 63

Query: 82  EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139
               +   ++GGEPL+Q       I  ++++ FEIA+ T+         D+  VS     
Sbjct: 64  --PVKKITISGGEPLMQKEALEEFINEMHEKDFEIALYTS--------YDFKDVSRNILK 113

Query: 140 DLKI----KGGQELKL 151
            LK     K   EL++
Sbjct: 114 KLKYLKVGKYMHELRI 129


>gi|148827711|ref|YP_001292464.1| purine nucleoside phosphorylase [Haemophilus influenzae PittGG]
 gi|148718953|gb|ABR00081.1| purine nucleoside phosphorylase [Haemophilus influenzae PittGG]
          Length = 262

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 43/194 (22%)

Query: 3   LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51
           + ++ EIF+ L           QG      R ++F    GC L            C +C 
Sbjct: 1   MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42

Query: 52  TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109
                 + T+  +         + EQ +      R   ++GGEP +     VPL +AL  
Sbjct: 43  NPETIPRYTENAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99

Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ------ELKL---VFPQVNVSP 160
           +G    ++++G  E  +    I V+ K   DLK +G        + K    + PQ  +  
Sbjct: 100 QGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLKGEGIGLQTLCFDRKNQAGIVPQQVILE 159

Query: 161 ENYIGFDFERFSLQ 174
             +I  D    +LQ
Sbjct: 160 RLHIKNDKLERNLQ 173


>gi|284048152|ref|YP_003398491.1| pyruvate formate-lyase activating enzyme [Acidaminococcus
           fermentans DSM 20731]
 gi|283952373|gb|ADB47176.1| pyruvate formate-lyase activating enzyme [Acidaminococcus
           fermentans DSM 20731]
          Length = 243

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 27/119 (22%)

Query: 8   EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F ++ G G        +F    GC++           +C +C   DT      G  G 
Sbjct: 10  ETFGSVDGPGTRFI----IFV--QGCHM-----------RCLYCHNVDT---WKCGQGGQ 49

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
               D+L D  E        EG    ++GGEPLLQ+   + L +    RG    ++T G
Sbjct: 50  LKTADELLDQAERYRPYWGPEGG-ITVSGGEPLLQMEFLLDLFRKAKARGIGTCIDTAG 107


>gi|206895496|ref|YP_002246380.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738113|gb|ACI17191.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 230

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 36/142 (25%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY--- 87
           GCN            +C +C               +  Q A+  +E+      + R    
Sbjct: 26  GCNF-----------RCPYC---------HNPELVDPQQYAEPWQEEEFWAFLQSRTQKL 65

Query: 88  --CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKA 137
              V+TGGEP LQ D+ P ++ + K GF I ++TNG+             +D+I +  KA
Sbjct: 66  DAVVVTGGEPTLQEDLQPFLEKIRKMGFLIKLDTNGSNPDVLKDLLSANLVDYIAMDIKA 125

Query: 138 GCDLKIKGGQELKLVFPQVNVS 159
             +   K  +  K+   + ++ 
Sbjct: 126 PLE---KYSEVTKVPVDKPDIE 144


>gi|210615494|ref|ZP_03290621.1| hypothetical protein CLONEX_02837 [Clostridium nexile DSM 1787]
 gi|210150343|gb|EEA81352.1| hypothetical protein CLONEX_02837 [Clostridium nexile DSM 1787]
          Length = 232

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 18/101 (17%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F   SGCN            +C FC    + +   +  +Y  +++   ++++    + 
Sbjct: 21  TIF--TSGCNF-----------RCPFCHNAPLVLGTGQTEKYPEEEIFTFLKKRQGILDG 67

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
                 ++GGEPLLQ D+   ++ + + GF + ++TNG+  
Sbjct: 68  ----VCVSGGEPLLQNDIERFLEQVKELGFLVKLDTNGSFP 104


>gi|54024605|ref|YP_118847.1| hypothetical protein nfa26360 [Nocardia farcinica IFM 10152]
 gi|54016113|dbj|BAD57483.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 526

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 16/94 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            +GCNL           +C  C   F        G   V  +   ++++           
Sbjct: 126 LAGCNL-----------RCPTC---FADSTPELAGVVAVADVLANVDQRLAREHGRLDVL 171

Query: 89  VLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
           +L+GGEP L  D+P L+  L  R    I + TNG
Sbjct: 172 MLSGGEPTLHPDLPTLLAELTARPITRILINTNG 205


>gi|20094522|ref|NP_614369.1| fused ferredoxin domain/pyruvate-formate lyase-activating protein
           [Methanopyrus kandleri AV19]
 gi|19887637|gb|AAM02299.1| Ferredoxin domain fused to pyruvate-formate lyase-activating enzyme
           [Methanopyrus kandleri AV19]
          Length = 390

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 18/104 (17%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL           +C  C    +      G R   ++ A L+       E       +
Sbjct: 164 GCNL-----------RCPQCQNHSIAFGAAMGARMRPEEAARLL--VGTAREYGVNRVAI 210

Query: 91  TGGEPLLQV--DVPLIQALNKRG---FEIAVETNGTIEPPQGID 129
           +GGEP L     V  ++   + G     + V+TNGT+  P  +D
Sbjct: 211 SGGEPTLNREFLVEFVRKCREYGGPDLRVHVDTNGTVLSPDYVD 254


>gi|145635399|ref|ZP_01791101.1| predicted pyruvate-formate lyase-activating enzyme [Haemophilus
           influenzae PittAA]
 gi|229844321|ref|ZP_04464461.1| purine nucleoside phosphorylase [Haemophilus influenzae 6P18H1]
 gi|145267405|gb|EDK07407.1| predicted pyruvate-formate lyase-activating enzyme [Haemophilus
           influenzae PittAA]
 gi|229812570|gb|EEP48259.1| purine nucleoside phosphorylase [Haemophilus influenzae 6P18H1]
          Length = 262

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 34/153 (22%)

Query: 3   LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51
           + ++ EIF+ L           QG      R ++F    GC L            C +C 
Sbjct: 1   MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42

Query: 52  TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109
                 + T+  +         + EQ +      R   ++GGEP +     VPL +AL  
Sbjct: 43  NPETIPRYTENAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFEALRS 99

Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
           +G    ++++G  E  +    I V+ K   DLK
Sbjct: 100 QGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLK 132


>gi|68249117|ref|YP_248229.1| pyruvate-formate lyase-activating enzyme [Haemophilus influenzae
           86-028NP]
 gi|68057316|gb|AAX87569.1| predicted pyruvate-formate lyase-activating enzyme [Haemophilus
           influenzae 86-028NP]
          Length = 262

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 34/153 (22%)

Query: 3   LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51
           + ++ EIF+ L           QG      R ++F    GC L            C +C 
Sbjct: 1   MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42

Query: 52  TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109
                 + T+  +         + EQ +      R   ++GGEP +     VPL +AL  
Sbjct: 43  NPETIPRYTESAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99

Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
           +G    ++++G  E  +    I V+ K   DLK
Sbjct: 100 QGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLK 132


>gi|13542157|ref|NP_111845.1| Fe-S oxidoreductase [Thermoplasma volcanium GSS1]
 gi|14325589|dbj|BAB60492.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 313

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 28/110 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD-LIEEQWITGEKEGRYCVL 90
           CNL           +C+ C          +G  +  + L D  IEE    G    +   +
Sbjct: 12  CNL-----------RCKSC-------NAWQGKIFFPEDLIDKHIEEMKKNG---IKIVSV 50

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134
           TGGEP L   V  +++ L +  F   + TNGT           +D + +S
Sbjct: 51  TGGEPTLNKSVVEIVKKLKEHHFFTHIATNGTNPYVMRKLYPYLDAVTIS 100


>gi|224540942|ref|ZP_03681481.1| hypothetical protein CATMIT_00093 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526175|gb|EEF95280.1| hypothetical protein CATMIT_00093 [Catenibacterium mitsuokai DSM
           15897]
          Length = 306

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 11/143 (7%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           +G    V+++ D+  +     E+      L+GGE ++Q D  + L+ AL ++G  +A+ET
Sbjct: 110 EGEIKTVEEVVDICMQDIDFYEESNGGVTLSGGEAMVQYDFMMALVHALKEKGLHLAIET 169

Query: 119 NGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD-FERF 171
            G ++           D +    K    +K K G  +     Q N       G +   R 
Sbjct: 170 TGIVDHEKFKKAAPLFDLLLFDVKQADPMKHKKGTHVTNEVIQKNFKWAIEQGLNVLPRI 229

Query: 172 SLQPMDGPFLEENTNLAISYCFQ 194
            + P     LE+   LA   C +
Sbjct: 230 PVIPGFNETLEDAKELA--TCIK 250


>gi|94314056|ref|YP_587265.1| ribonucleoside triphosphate reductase-activating protein (NrdG-D
           activase) [Cupriavidus metallidurans CH34]
 gi|93357908|gb|ABF11996.1| ribonucleoside triphosphate reductase-activating protein (NrdG-D
           activase) [Cupriavidus metallidurans CH34]
          Length = 223

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 26/127 (20%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           GR+A  VFC   GC             +C +C    +    +   R   D LA L   + 
Sbjct: 19  GRLAAVVFC--QGCP-----------WRCDYCHNPHLIPVASPSARVWEDVLAFLARRRG 65

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
           +         V +GGEP LQ  +P  ++ + + GFE+A+ T G            +DW+ 
Sbjct: 66  LLDG-----VVFSGGEPTLQAALPAAMRDVRQLGFEVALHTAGMYPDRLEAALPWVDWVG 120

Query: 133 VSPKAGC 139
              KA  
Sbjct: 121 FDIKAPA 127


>gi|193214403|ref|YP_001995602.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Chloroherpeton thalassium ATCC 35110]
 gi|193087880|gb|ACF13155.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Chloroherpeton thalassium ATCC 35110]
          Length = 204

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 18/100 (18%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF    GCN            +C +C    + +    G   +   + D ++    T +  
Sbjct: 22  VF--TQGCNF-----------RCPYCHNPELVLPEQFGKTLSPALVLDFLK----TRKGR 64

Query: 85  GRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
                +TGGEP LQ   +  +QA+     +I ++TNG   
Sbjct: 65  LSSVTITGGEPALQPALLDFLQAIKSIPLKIKLDTNGAFP 104


>gi|256810531|ref|YP_003127900.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanocaldococcus fervens AG86]
 gi|256793731|gb|ACV24400.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanocaldococcus fervens AG86]
          Length = 240

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 30/125 (24%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +F    GCN+           +C +C    +           V++L + I+         
Sbjct: 24  IF--LHGCNM-----------RCPYC--HNLNHILGHKKEMTVEELFNNID------FFF 62

Query: 85  GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSP 135
               V++GGEP LQ D  + + +   ++GF + ++TNGT             ID++ +  
Sbjct: 63  ADAIVISGGEPTLQKDAVIEIAKYAKEKGFPVKIDTNGTRPEVIEELVKNNLIDYVAIDV 122

Query: 136 KAGCD 140
           K   D
Sbjct: 123 KCKFD 127


>gi|167754788|ref|ZP_02426915.1| hypothetical protein CLORAM_00292 [Clostridium ramosum DSM 1402]
 gi|237735925|ref|ZP_04566406.1| pyruvate formate-lyase activating enzyme [Mollicutes bacterium D7]
 gi|167705620|gb|EDS20199.1| hypothetical protein CLORAM_00292 [Clostridium ramosum DSM 1402]
 gi|229381670|gb|EEO31761.1| pyruvate formate-lyase activating enzyme [Coprobacillus sp. D7]
          Length = 255

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 27/119 (22%)

Query: 8   EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F ++ G G  +     +F    GC L           +C+FC   DT +   + T   
Sbjct: 19  ESFGSVDGPGIRYI----IF--LHGCPL-----------RCKFCHNPDT-WANAKST-ME 59

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
               + +A  ++ +   G   G    ++GGEPLLQ+D  + L +   K G    ++T+G
Sbjct: 60  MTPQEAIAKALKYKSYWGNDGG--ITVSGGEPLLQIDFLIELFKLAKKEGINTCIDTSG 116


>gi|170735545|ref|YP_001774659.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           cenocepacia MC0-3]
 gi|169821583|gb|ACA96164.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           cenocepacia MC0-3]
          Length = 374

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 24/145 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN   G    R S       TD+  +  +   R +  QL  +       G ++ R   +T
Sbjct: 52  CNFRCGYCMPRESFG-----TDYAFMPSS--ERLSFAQLEKIARAFTSLGVEKIR---IT 101

Query: 92  GGEPLLQVDVP-LIQALN------KRGFEIAVETNGTIEP-------PQGIDWICVSPKA 137
           GGEPLL+ ++  LI+ L        +  EIA+ TNG++           G+  + VS  A
Sbjct: 102 GGEPLLRRNLEALIERLATLTTVDGKPVEIALTTNGSLLAAKARALRDAGLSRVTVSLDA 161

Query: 138 GCDLKIKGGQELKLVFPQVNVSPEN 162
             D   +   +  +   +V    E 
Sbjct: 162 LDDAVFRRMNDADVPVARVLAGIEA 186


>gi|160936896|ref|ZP_02084260.1| hypothetical protein CLOBOL_01785 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440086|gb|EDP17833.1| hypothetical protein CLOBOL_01785 [Clostridium bolteae ATCC
           BAA-613]
          Length = 232

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 21/100 (21%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITG 81
             +F    GCN            +C FC     G+ G+    Y   + +   +E++    
Sbjct: 20  ATIF--TGGCNF-----------RCPFC--HNSGLLGSDAEEYECQEDILAFLEKRKRVL 64

Query: 82  EKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           E       +TGGEP LQ D+   I+ +   G  + ++TNG
Sbjct: 65  EG----VCITGGEPTLQPDLEEFIRKVRSLGLAVKLDTNG 100


>gi|218780153|ref|YP_002431471.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761537|gb|ACL04003.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 230

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 27/101 (26%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY- 87
            +GCN            +C +C                    A +I+  W+    + R  
Sbjct: 24  TAGCNF-----------KCPYC----------HNPELLSFSTAQVIKNNWVMSFLKERKG 62

Query: 88  ----CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
                V+TGGEP L  D+   + A+   GFE+ ++TNG+  
Sbjct: 63  FLDGVVITGGEPTLHKDLMDFMAAIKDMGFELKLDTNGSRP 103


>gi|125974087|ref|YP_001037997.1| radical SAM family protein [Clostridium thermocellum ATCC 27405]
 gi|281418232|ref|ZP_06249252.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium
           thermocellum JW20]
 gi|125714312|gb|ABN52804.1| Radical SAM [Clostridium thermocellum ATCC 27405]
 gi|281409634|gb|EFB39892.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium
           thermocellum JW20]
          Length = 280

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 56/178 (31%), Gaps = 44/178 (24%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLS------------------------- 44
           F T+ G G      A+F    GCN+      +  +                         
Sbjct: 11  FSTVDGPGNRT---AIF--LQGCNMNCLYCHNPETRCKCMHCGACVNSCPTGALSFEDEK 65

Query: 45  -----AQCRFCDTDFVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
                A+C  CD+           +      +Q+   +E+Q        R   ++GGE  
Sbjct: 66  VRYNCAKCVHCDSCIKACPHDSSPKTVDMTPEQVWRKVEKQIPF----IRGITVSGGECT 121

Query: 97  LQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
           L       L       G    +++NGT++     D + V+     D+K    +E K V
Sbjct: 122 LYPEFLTELFILAQAHGLSTLIDSNGTLDFEHYPDLLAVTDGVMLDIKAFDCEEHKRV 179


>gi|145633528|ref|ZP_01789257.1| hypothetical protein CGSHi3655_05394 [Haemophilus influenzae 3655]
 gi|144985897|gb|EDJ92505.1| hypothetical protein CGSHi3655_05394 [Haemophilus influenzae 3655]
          Length = 262

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 30/151 (19%)

Query: 3   LYSIKEIFLTL---------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD 53
           + ++ EIF+ L         +G+G      ++F    GC L            C +C   
Sbjct: 1   MTALSEIFVPLHRIIPFSNVEGQGNRT---SIF--LQGCKL-----------NCLYCHNP 44

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRG 111
               + T+  +         + EQ +      R   ++GGEP +     VPL +AL  +G
Sbjct: 45  ETIPRYTENAKLVS---LQYLYEQVMEATPFIRGVTVSGGEPTIHHKKLVPLFEALRSQG 101

Query: 112 FEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
               ++++G  E  +    I V+ K   DLK
Sbjct: 102 LTCYLDSSGFFEFDRIRSLIDVTDKFLFDLK 132


>gi|145219616|ref|YP_001130325.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Prosthecochloris vibrioformis DSM 265]
 gi|145205780|gb|ABP36823.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Chlorobium phaeovibrioides DSM 265]
          Length = 232

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 18/98 (18%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGR 86
            SGCN            +C +C    + +    G     + D++   I            
Sbjct: 30  TSGCNF-----------RCPYCHNPELVLPDEFGSTPLLSFDEVLARITRNRNLLGG--- 75

Query: 87  YCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
             V+TGGEP +   +P  ++ L   G ++ ++TNG+  
Sbjct: 76  -VVVTGGEPTIHQSLPEALRTLKGLGLKVKLDTNGSRP 112


>gi|316934450|ref|YP_004109432.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Rhodopseudomonas palustris DX-1]
 gi|315602164|gb|ADU44699.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Rhodopseudomonas palustris DX-1]
          Length = 210

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 38/119 (31%), Gaps = 9/119 (7%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
            R S C+             C + C   +         R         +     T     
Sbjct: 22  VRLSTCDWPGELVATVFCQGCPWQC--GYCHNPHLLPARGPDQLAWQDVFAFLETRRGLL 79

Query: 86  RYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAG 138
              V +GGEP LQ D+PL I A+   GF I + T G            +DWI    KA 
Sbjct: 80  DGVVFSGGEPTLQSDLPLAIAAVRSLGFRIGLHTAGPYPERLARVLPLLDWIGFDVKAP 138


>gi|153815319|ref|ZP_01967987.1| hypothetical protein RUMTOR_01553 [Ruminococcus torques ATCC 27756]
 gi|317501676|ref|ZP_07959867.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331088441|ref|ZP_08337356.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145847381|gb|EDK24299.1| hypothetical protein RUMTOR_01553 [Ruminococcus torques ATCC 27756]
 gi|316896927|gb|EFV19007.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330408208|gb|EGG87696.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 250

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 26/118 (22%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
           E F ++ G G    R  +F   +GC           + +C+FC   DT        KG  
Sbjct: 15  ESFGSVDGPGV---RYVIF--LTGC-----------AMRCQFCHNPDT----WNLKKGTL 54

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           Y  D+L       + T   +     ++GGEPLLQ+D  + L +   + G    ++T+G
Sbjct: 55  YTADELLKTALR-YRTYWGDKGGITVSGGEPLLQIDFLIELFRKAKEAGVHTTLDTSG 111


>gi|313898310|ref|ZP_07831847.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium sp. HGF2]
 gi|312956692|gb|EFR38323.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium sp. HGF2]
          Length = 378

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 18/101 (17%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F    GCN            +C FC    +            + +   +E++    + 
Sbjct: 169 TIF--TGGCNF-----------RCPFCQNSDLVFLPENMPELQEEDVLSFLEKRKGILDG 215

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
                 ++GGEPLL  ++   ++ +   G+ + ++TNG+  
Sbjct: 216 ----VCISGGEPLLNPELAGFLKKIKDMGYAVKLDTNGSSP 252


>gi|192291021|ref|YP_001991626.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Rhodopseudomonas palustris TIE-1]
 gi|192284770|gb|ACF01151.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Rhodopseudomonas palustris TIE-1]
          Length = 233

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 38/119 (31%), Gaps = 9/119 (7%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
            R S C+             C + C   +         R         +     T     
Sbjct: 22  VRLSTCDWPGELVATVFCQGCPWQC--GYCHNPHLLPARGPDQLAWQDVFAFLETRRGLL 79

Query: 86  RYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAG 138
              V +GGEP LQ D+PL I A+   GF I + T G            +DWI    KA 
Sbjct: 80  DGVVFSGGEPTLQSDLPLAIAAVRSLGFRIGLHTAGPYPERLARVLPLLDWIGFDVKAP 138


>gi|309778332|ref|ZP_07673258.1| putative pyruvate formate-lyase 1 activating enzyme
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308913898|gb|EFP59712.1| putative pyruvate formate-lyase 1 activating enzyme
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 306

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 49/156 (31%), Gaps = 52/156 (33%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA--------------QCRFC----- 50
           F T  GEG       +F    GC L     Q+                  +C  C     
Sbjct: 14  FATHDGEGIRT---TIF--LKGCPLRCAWCQNPEGLSPKPQLLYMKSKCMRCGSCVIAAK 68

Query: 51  --------DTDFVGIQGTKGG-----------------RYNVDQLADLIEEQWITGEKEG 85
                   D+ ++    ++                    Y V++L   I++        G
Sbjct: 69  HGGVSMKHDSIWLQRSASEDWQHILELCPTGALRYDAKEYTVEELFKEIQKDAPFFRYGG 128

Query: 86  RYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119
               L+GGEPLLQ D    L+QA    G    +ET+
Sbjct: 129 G-VTLSGGEPLLQDDFACRLLQACKTEGIHTTMETS 163


>gi|256004437|ref|ZP_05429417.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium
           thermocellum DSM 2360]
 gi|255991578|gb|EEU01680.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium
           thermocellum DSM 2360]
 gi|316941332|gb|ADU75366.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium
           thermocellum DSM 1313]
          Length = 280

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 56/178 (31%), Gaps = 44/178 (24%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLS------------------------- 44
           F T+ G G      A+F    GCN+      +  +                         
Sbjct: 11  FSTVDGPGNRT---AIF--LQGCNMNCLYCHNPETRCKCMHCGACVNSCPTGALSFEDEK 65

Query: 45  -----AQCRFCDTDFVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
                A+C  CD+           +      +Q+   +E+Q        R   ++GGE  
Sbjct: 66  VRYNCAKCVHCDSCIKACPHDSSPKTVDMTPEQVWRKVEKQIPF----IRGITVSGGECT 121

Query: 97  LQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
           L       L       G    +++NGT++     D + V+     D+K    +E K V
Sbjct: 122 LYPEFLTELFILAQAHGLSTLIDSNGTLDFEHYPDLLAVTDGVMLDIKAFDCEEHKRV 179


>gi|291546361|emb|CBL19469.1| pyruvate formate-lyase 1-activating enzyme [Ruminococcus sp. SR1/5]
          Length = 249

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 26/118 (22%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
           E F ++ G G    R  +F   SGC           + +C+FC   DT     Q   G  
Sbjct: 15  ESFGSVDGPGV---RYVIF--LSGC-----------AMRCQFCHNPDT----WQMKTGTE 54

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           Y  D+L +           +G    ++GGEPLLQ+D    L +   K G    ++T+G
Sbjct: 55  YTADELLEKACRYRSYWGSKGG-ITVSGGEPLLQIDFLTELFRKAKKLGIHTTLDTSG 111


>gi|168179136|ref|ZP_02613800.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum
           NCTC 2916]
 gi|182670033|gb|EDT82009.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum
           NCTC 2916]
          Length = 232

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 57/151 (37%), Gaps = 36/151 (23%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G   + D++   +       
Sbjct: 22  VF--FQGC-----------QLRCVYCHNPDT----WDFNAGIEISSDEVLKKVLRYKPY- 63

Query: 82  EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT-----IEPPQGIDWICVS 134
            K+      +GGEPL+Q    + +++    +G   A++T+G       E  Q +D + + 
Sbjct: 64  FKQVGGITCSGGEPLMQPEFLLEILKKCKNQGIHTALDTSGVGIGNYEEILQYVDLVILD 123

Query: 135 PKAGCDLK--------IKGGQELKLVFPQVN 157
            K   + K        ++G  + K V  ++N
Sbjct: 124 IKHIQEEKYISICGKNMEGFNKFKRVVNKLN 154


>gi|301169235|emb|CBW28832.1| predicted pyruvate-formate lyase-activating enzyme [Haemophilus
           influenzae 10810]
          Length = 262

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 43/194 (22%)

Query: 3   LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51
           + ++ EIF+ L           QG      R ++F    GC L            C +C 
Sbjct: 1   MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQGCKL-----------NCLYCH 42

Query: 52  TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109
                 + T+  +         + EQ +      R   ++GGEP +     VPL +AL  
Sbjct: 43  NPETIPRYTENAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99

Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ------ELKL---VFPQVNVSP 160
           +G    ++++G  E  +    I V+ K   DLK +G        + K    + PQ  +  
Sbjct: 100 QGLTCYLDSSGFFEFDRIRSLIDVTDKFLFDLKGEGIGLQTLCFDRKNQAGIVPQQVIPK 159

Query: 161 ENYIGFDFERFSLQ 174
             +I  D    +LQ
Sbjct: 160 RLHIKNDKLERNLQ 173


>gi|256841526|ref|ZP_05547033.1| glycyl-radical enzyme activating protein [Parabacteroides sp. D13]
 gi|256737369|gb|EEU50696.1| glycyl-radical enzyme activating protein [Parabacteroides sp. D13]
          Length = 276

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--V 99
           R   +C F       +      RY+ + L   + +     E+ G    L+GGEPLLQ   
Sbjct: 75  RSIIECPF------SVCAPIAKRYDSEDLLKELLKDSSLFEQSGGGVTLSGGEPLLQWKP 128

Query: 100 DVPLIQALNKRGFEIAVET 118
            VPL+  L      +++ET
Sbjct: 129 LVPLLSELKAANIHVSIET 147


>gi|256822441|ref|YP_003146404.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Kangiella koreensis DSM 16069]
 gi|256795980|gb|ACV26636.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Kangiella koreensis DSM 16069]
          Length = 249

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 11/110 (10%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           +L         + +CR+C      I       Y+  +L + + ++    E      V +G
Sbjct: 33  HLSCVVYCQGCAWRCRYCHNP-ELIPTKADQSYDWQELVNFLTKRQGLLEA----VVFSG 87

Query: 93  GEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPK 136
           GEPLLQ   VP I+ +   GF++ + T G+           +DW+    K
Sbjct: 88  GEPLLQSALVPAIETVKAMGFKVGLHTGGSAPKRFKALLSNVDWVGFDVK 137


>gi|163857402|ref|YP_001631700.1| hypothetical protein Bpet3090 [Bordetella petrii DSM 12804]
 gi|163261130|emb|CAP43432.1| pflA [Bordetella petrii]
          Length = 253

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 28/127 (22%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G +A  VF   +GC             +C +C    + +   +GG Y+   + + +    
Sbjct: 51  GMLACVVFI--AGCP-----------WRCSYCHNPHLQV---RGGHYDWKAVLEFL--NG 92

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
             G  +    V +GGEPL +  +P +++A+   GF +A+ T G            +DW+ 
Sbjct: 93  RQGLLDA--VVFSGGEPLSEPRLPQMVRAVRTLGFRVALHTAGIYPSRLQDLLPSLDWVG 150

Query: 133 VSPKAGC 139
              KA  
Sbjct: 151 FDVKADA 157


>gi|158321088|ref|YP_001513595.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Alkaliphilus oremlandii OhILAs]
 gi|158141287|gb|ABW19599.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Alkaliphilus oremlandii OhILAs]
          Length = 227

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 29/157 (18%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            VF    GCN            +C +C      +    G R  V+   D ++++    E 
Sbjct: 20  TVFF-TGGCNF-----------RCPYC--HNSPLVHNIGERIEVEDAIDFLKKRKRFVEA 65

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVSP 135
                 ++GGEP LQ D+   I  + K G  + ++TNGT           Q +D++ +  
Sbjct: 66  ----VCISGGEPTLQRDLYDFIYRIKKEGLLVKLDTNGTNPILLRKLIEDQLLDYVAMDI 121

Query: 136 KAG---CDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
           KA     ++  +    +  +   V++  EN + ++F 
Sbjct: 122 KAPLNQYEMVTQVNVNIHDIQESVHILLENKVDYEFR 158


>gi|269956682|ref|YP_003326471.1| pyruvate formate-lyase activating enzyme [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305363|gb|ACZ30913.1| pyruvate formate-lyase activating enzyme [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 334

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 28/135 (20%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   +GC L           +C +C   DT    ++   G     DQL   I+   
Sbjct: 98  RMTVF--LNGCPL-----------RCLYCHNPDT----LEMKDGEPVTADQLLTRIKRYV 140

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130
                      ++GGE L Q      L++   + G   A++T+G      T E     D 
Sbjct: 141 PAFTATQGGLTISGGEVLQQPAFAARLLRGAKEMGVHTAIDTSGFLGAAMTDEMIADTDL 200

Query: 131 ICVSPKAGCDLKIKG 145
           + +  K+G     + 
Sbjct: 201 VLLDIKSGDPDIYRR 215


>gi|225028851|ref|ZP_03718043.1| hypothetical protein EUBHAL_03138 [Eubacterium hallii DSM 3353]
 gi|224953825|gb|EEG35034.1| hypothetical protein EUBHAL_03138 [Eubacterium hallii DSM 3353]
          Length = 250

 Score = 52.3 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 25/120 (20%)

Query: 7   KEIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        VF    GC L           +C+FC   DT +   +    
Sbjct: 15  TESFGSVDGPGVRFI----VF--LQGCPL-----------RCQFCHNPDT-WKMTEENGA 56

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
              N ++L +          K G    ++GGEPLLQ+D  +   +   ++G    ++T G
Sbjct: 57  IWKNAEELLNQALRYRPY-WKNGGGITVSGGEPLLQIDFMLEFFKKAKEKGIHTVIDTAG 115


>gi|187926826|ref|YP_001893171.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Ralstonia pickettii 12J]
 gi|241665155|ref|YP_002983514.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Ralstonia pickettii 12D]
 gi|187728580|gb|ACD29744.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Ralstonia pickettii 12J]
 gi|240867182|gb|ACS64842.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Ralstonia pickettii 12D]
          Length = 237

 Score = 52.3 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 34/133 (25%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G++A  VF   +GC             +C +C    +  +       +VD        Q 
Sbjct: 35  GQLAAVVFI--AGCP-----------WRCHYCHNPHLQTRARSLDWNDVDAFL-----QK 76

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
             G  +G   V +GGEPL +  +P L++A+   GF+I + T G            +DW+ 
Sbjct: 77  RAGLLDG--VVFSGGEPLSEPRLPELMRAVRALGFKIGLHTGGIYPARMAEALPLVDWV- 133

Query: 133 VSPKAGCDLKIKG 145
                G D+K  G
Sbjct: 134 -----GLDIKTTG 141


>gi|332107698|gb|EGJ08922.1| radical SAM family protein [Rubrivivax benzoatilyticus JA2]
          Length = 203

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 19/96 (19%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY- 87
            SGC L           +C +C                +  +A+++ +          + 
Sbjct: 57  LSGCPL-----------RCAYC----HNPDTWHRHDGTLTSVAEILTDIGRYRGFIQAHG 101

Query: 88  -CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
              L+GGEPL Q      L++     G   A++T+G
Sbjct: 102 GVTLSGGEPLTQPRFVKALLRGCKAMGLHTALDTSG 137


>gi|253580416|ref|ZP_04857681.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848146|gb|EES76111.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 231

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 19/121 (15%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F    GCN            +C FC    + +   +   Y+ ++L   ++++    + 
Sbjct: 21  TIF--LGGCNF-----------RCPFCQNGILVVAPGEQPDYSQEELLTFLKKRKGILDG 67

Query: 84  EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDL 141
                 ++GGEP L       +  + + G+ + ++TNG+     + +    +  K   D+
Sbjct: 68  ----VCISGGEPTLSDGLEEFLGKIKELGYAVKLDTNGSRPKIVKHLAEAGLIDKVAMDI 123

Query: 142 K 142
           K
Sbjct: 124 K 124


>gi|91203064|emb|CAJ72703.1| similar to moaA/nirJ/pqqE cofactor biosynthesis protein [Candidatus
           Kuenenia stuttgartiensis]
          Length = 408

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 17/101 (16%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
             CNL       +        D ++     TK  +  +D +A+                +
Sbjct: 48  QRCNLKCVHCYSQSK------DIEYPNELSTKEAKAMLDDIAE----------YGAPVIL 91

Query: 90  LTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGID 129
            +GGEPL++ D + LI+    +G    + TNGT+   +  D
Sbjct: 92  FSGGEPLMRPDLLELIEYAKAQGLRAVISTNGTLITKEKAD 132


>gi|269215654|ref|ZP_06159508.1| nitrite reductase heme biosynthesis J protein [Slackia exigua ATCC
           700122]
 gi|269131141|gb|EEZ62216.1| nitrite reductase heme biosynthesis J protein [Slackia exigua ATCC
           700122]
          Length = 420

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 18/96 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C      +      +  + + ++   +I++     +      + +
Sbjct: 50  CNLKC--------EHC------YALSDAKRYDQLSTEEAKAMIDDL---ADFGAPVLLFS 92

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           GGEP ++ D+  L+Q    RG  + + TNGT+  P+
Sbjct: 93  GGEPCVRPDLVELMQHAKDRGMRVVISTNGTLITPE 128


>gi|266619761|ref|ZP_06112696.1| putative radical SAM [Clostridium hathewayi DSM 13479]
 gi|288868665|gb|EFD00964.1| putative radical SAM [Clostridium hathewayi DSM 13479]
          Length = 328

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 17/110 (15%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       R ++             G +      ++   ++ E      K+    +L 
Sbjct: 16  CNLNCWFCGQRKNS---------ALRDGKESMALKTEEWLGIVNELDAAAGKKPS-VMLW 65

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI------EPPQGIDWICVS 134
           GGEPL+      +   L++RG+ + + TNGT+        P  +D I VS
Sbjct: 66  GGEPLMSPCFDEIASTLHERGYRVGIVTNGTLLDRHAETVPYCLDKIYVS 115


>gi|225569558|ref|ZP_03778583.1| hypothetical protein CLOHYLEM_05652 [Clostridium hylemonae DSM
           15053]
 gi|225161766|gb|EEG74385.1| hypothetical protein CLOHYLEM_05652 [Clostridium hylemonae DSM
           15053]
          Length = 288

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 42/124 (33%), Gaps = 11/124 (8%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG---RYNVDQLADLIEEQ--WITGEKEGR 86
           C   + +        CR C+      +    G    Y  +   ++  E         +G 
Sbjct: 57  CPHGAVKGTQVDREVCRTCEKKECVTEHKTKGMYLSYEEETPEEVFREACAGELMFYDGG 116

Query: 87  YCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQG----IDWICVSPKAGCD 140
               TGGE  LQ       ++ L + G   AVETNGT     G    ID + +  K   D
Sbjct: 117 GVTFTGGEATLQYDELEKALRMLKEYGINTAVETNGTHPALAGLFPYIDELIIDCKHCSD 176

Query: 141 LKIK 144
            K  
Sbjct: 177 TKHT 180


>gi|297545065|ref|YP_003677367.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842840|gb|ADH61356.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 228

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 30/158 (18%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
             VF   SGCN            +C +C   ++          +  +  D ++++    E
Sbjct: 19  ATVFV--SGCNF-----------KCPYCHNSYLIQIREGMR--SEKEFFDYLKKRANLIE 63

Query: 83  KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS 134
                  +TGGEP L   +   I+ +    F + ++TNG+             +D+I + 
Sbjct: 64  G----VCITGGEPTLWKGLEDFIKDIKDLNFSVKLDTNGSRPQVLENLIDEGLLDYIAMD 119

Query: 135 PKAGCD---LKIKGGQELKLVFPQVNVSPENYIGFDFE 169
            KA  +   + +K  +++  V   V +   + I ++F 
Sbjct: 120 IKAPIEKYGIFLKNKKDIDNVQKSVEIIKNSDIDYEFR 157


>gi|218561250|ref|YP_002394163.1| pyruvate formate-lyase 3-activating enzyme [Escherichia coli S88]
 gi|218691120|ref|YP_002399332.1| putative pyruvate formate-lyase 3-activating enzyme [Escherichia
           coli ED1a]
 gi|237703757|ref|ZP_04534238.1| pyruvate-formate lyase-activating enzyme [Escherichia sp.
           3_2_53FAA]
 gi|218368019|emb|CAR05821.1| putative pyruvate formate-lyase 3-activating enzyme [Escherichia
           coli S88]
 gi|218428684|emb|CAR09615.2| putative pyruvate formate-lyase 3-activating enzyme [Escherichia
           coli ED1a]
 gi|226901669|gb|EEH87928.1| pyruvate-formate lyase-activating enzyme [Escherichia sp.
           3_2_53FAA]
 gi|323950274|gb|EGB46155.1| glycyl-radical enzyme activating protein family protein
           [Escherichia coli H252]
 gi|323955614|gb|EGB51374.1| glycyl-radical enzyme activating protein family protein
           [Escherichia coli H263]
          Length = 305

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           KG R +V  +   +E++     + G    L+GGEPL Q +    L++A   +G+  A+ET
Sbjct: 107 KGKRMSVTAVMRELEKEENLYRRSGGGITLSGGEPLAQPEFARELLKACKAKGWHTAIET 166

Query: 119 NG 120
           +G
Sbjct: 167 SG 168


>gi|26250358|ref|NP_756398.1| putative pyruvate formate-lyase 3 activating enzyme [Escherichia
           coli CFT073]
 gi|26110788|gb|AAN82972.1|AE016769_87 Putative pyruvate formate-lyase 3 activating enzyme [Escherichia
           coli CFT073]
          Length = 305

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           KG R +V  +   +E++     + G    L+GGEPL Q +    L++A   +G+  A+ET
Sbjct: 107 KGKRMSVTAVMRELEKEENLYRRSGGGITLSGGEPLAQPEFARELLKACKAKGWHTAIET 166

Query: 119 NG 120
           +G
Sbjct: 167 SG 168


>gi|150389198|ref|YP_001319247.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Alkaliphilus metalliredigens QYMF]
 gi|149949060|gb|ABR47588.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Alkaliphilus metalliredigens QYMF]
          Length = 227

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 66/195 (33%), Gaps = 56/195 (28%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
             GCN   G   +                   +G   N D++   +++     +K     
Sbjct: 24  TGGCNFRCGYCHNGEIVN-------------NQGRTINEDEILGFLKK----RKKFIDAV 66

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGCD 140
            ++GGEP LQ D+   +  +   GF + ++TNGT             ID+I +  K   +
Sbjct: 67  CISGGEPTLQNDLYEFVLQIKDLGFYVKLDTNGTNPTLLEKLIGENLIDYIAMDVKGPLE 126

Query: 141 ------------LKIKGGQEL----------KLVFPQVNVSPENYIGF-----DFERFSL 173
                         IK   EL          +    Q   S E++I         +++ L
Sbjct: 127 KYEMIVRTKVNLEDIKRSIELIQQSQVSYEFRTTVCQELFSREDFINIGKLLQGSKKYYL 186

Query: 174 QPMDGPFLEENTNLA 188
           Q     F + +T LA
Sbjct: 187 Q----NFRDGHTVLA 197


>gi|220929757|ref|YP_002506666.1| radical SAM protein [Clostridium cellulolyticum H10]
 gi|220000085|gb|ACL76686.1| Radical SAM domain protein [Clostridium cellulolyticum H10]
          Length = 565

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C   +   +         +Q+  LI+E +  G  E R   LT
Sbjct: 85  CNL-----------KCVYC---YNNSRKDFSKELEKEQIFRLIDELYEAGTFEIR---LT 127

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           GGEP L  D   +++ +  + F I++ TNG
Sbjct: 128 GGEPTLHPDFFEIVKYIKSKNFFISLGTNG 157


>gi|153940083|ref|YP_001392935.1| radical SAM domain-containing protein [Clostridium botulinum F str.
           Langeland]
 gi|152935979|gb|ABS41477.1| radical SAM domain protein [Clostridium botulinum F str. Langeland]
 gi|295320913|gb|ADG01291.1| radical SAM domain protein [Clostridium botulinum F str. 230613]
          Length = 278

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 64/175 (36%), Gaps = 38/175 (21%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDT--------------DF 54
           F ++ G G      A+F  F GCN       +  +   C+ C T              D+
Sbjct: 12  FSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDY 66

Query: 55  VGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           V     K               G R     + ++I++   T         ++GGE  LQ 
Sbjct: 67  VKWDENKCKNCGLCLKKCKNNCGPRNKYMSVGEIIKKILKTKPFISG-ITVSGGECTLQK 125

Query: 100 D--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
           D  + L + +   G  I V+TNG+++  +      +   A  D+K    +E K++
Sbjct: 126 DFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMVDVKSFDNEEHKML 180


>gi|229825667|ref|ZP_04451736.1| hypothetical protein GCWU000182_01029 [Abiotrophia defectiva ATCC
           49176]
 gi|229790230|gb|EEP26344.1| hypothetical protein GCWU000182_01029 [Abiotrophia defectiva ATCC
           49176]
          Length = 286

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 27/122 (22%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
           E F T+ G G    R  +F    GC +           +C++C   DT     +   G  
Sbjct: 24  ETFGTVDGPGT---RYVIF--LKGCPM-----------RCKYCHNPDT----WEFAGGTE 63

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
             +D++                    TGGEPL Q+     L +     G    ++T+G  
Sbjct: 64  MTLDEIFA--GYYSKKEFYRKGGITCTGGEPLGQLKFVTALFKRAKDEGIHTCLDTSGIY 121

Query: 123 EP 124
            P
Sbjct: 122 YP 123


>gi|253577953|ref|ZP_04855225.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850271|gb|EES78229.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 246

 Score = 51.9 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 28/119 (23%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
           E F ++ G G    R  +F   SGC           + +C+FC   DT     +  +G  
Sbjct: 14  ESFGSVDGPGV---RYVIF--LSGC-----------AMRCQFCHNPDT----WKMKQGEL 53

Query: 65  YNVDQLAD-LIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           Y  D+L    +  +   G K G    ++GGEPLLQ+D      +     G    ++T+G
Sbjct: 54  YTADELLKKALRYKGYWGSKGG--ITVSGGEPLLQMDFLTEFFKKAKAEGVHTNLDTSG 110


>gi|119720485|ref|YP_920980.1| radical SAM domain-containing protein [Thermofilum pendens Hrk 5]
 gi|119525605|gb|ABL78977.1| Radical SAM domain protein [Thermofilum pendens Hrk 5]
          Length = 256

 Score = 51.9 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 66/178 (37%), Gaps = 36/178 (20%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCV 89
           GCNL           +C FC    V  + +  GR Y+ +++ + +    I G +  R   
Sbjct: 47  GCNL-----------RCVFCWGWRVRDRPSGAGRFYSPEEVYERLAS--IAGRRGYRLVR 93

Query: 90  LTGGEPLLQVDVPL--IQALNKRG-FEIAVETNGTI---EPPQGIDWICVSPKAGCDLKI 143
           ++G EP +  D  L  I+ L   G F   +ETNG +   +  +  D    S      + +
Sbjct: 94  ISGNEPTIAWDHLLRVIELLEADGRFRFVLETNGILIGADKSKARDLSKFS-SVHVRVSL 152

Query: 144 KGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLS 201
           KG  E +              G   E + LQ      LE   NL       +P   LS
Sbjct: 153 KGASEEEF---------HLLTGARREFYRLQ------LEALRNLLDEGVPAHPAVMLS 195


>gi|38637902|ref|NP_942876.1| activase of anaerobic class III ribonucleotide reductase [Ralstonia
           eutropha H16]
 gi|32527240|gb|AAP85990.1| activase of anaerobic class III ribonucleotide reductase [Ralstonia
           eutropha H16]
          Length = 239

 Score = 51.9 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 61/196 (31%), Gaps = 55/196 (28%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           GR+A  VFC   GC             +C +C        G    R         +    
Sbjct: 36  GRLAAVVFC--QGCP-----------WRCGYC-----HNPGLLDARAPSSIAWADVLAFL 77

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
              +      V +GGEP LQ  +   I  +  RGFE+A+ T G            +DWI 
Sbjct: 78  QARQGLLDGVVFSGGEPTLQGALAGAIADVQARGFEVALHTAGMYPDRLPAILPQLDWIG 137

Query: 133 VSPKAG-----CDLKIKGGQE-----LK-------------------LVFPQVNVSPENY 163
           +  KA         ++ G  E     L+                       +++   E+ 
Sbjct: 138 LDLKAPLHRYDAITRVPGSGERAWESLRHWVASDVAGECRTTWHAGMFDIAELHALAESI 197

Query: 164 IGFDFERFSLQPMDGP 179
                + ++LQ   G 
Sbjct: 198 AALGVKHWALQECRGS 213


>gi|189500325|ref|YP_001959795.1| Radical SAM domain-containing protein [Chlorobium phaeobacteroides
           BS1]
 gi|189495766|gb|ACE04314.1| Radical SAM domain protein [Chlorobium phaeobacteroides BS1]
          Length = 417

 Score = 51.9 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 24/95 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ--LADLIEEQWITGEKEGRYCV 89
           CNL            C         +  + GG+ ++D   L   IEE       E R   
Sbjct: 70  CNLNC--------IHCS--------VNASPGGKTHLDPGVLRRCIEELCSL---EVRVVK 110

Query: 90  LTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTI 122
            TGGEPL    +   L+QAL+  G  + VET+GT+
Sbjct: 111 FTGGEPLTYPGIENFLLQALHA-GIFVEVETSGTL 144


>gi|315637210|ref|ZP_07892430.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Arcobacter butzleri JV22]
 gi|315478482|gb|EFU69195.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Arcobacter butzleri JV22]
          Length = 225

 Score = 51.9 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 13/110 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
                   + +C +C  D   +  ++ G+Y+ +++ D ++++           VL+GGE 
Sbjct: 23  CIVWHISCNMRCSYCYND--NLVFSRIGKYSHNEVLDFLKKRVTLLSA----VVLSGGEA 76

Query: 96  LLQVDVPLIQALNKRGFEIAVETNGT-------IEPPQGIDWICVSPKAG 138
            +   VP  + + K G++I ++TNGT       +     +D+I +  KA 
Sbjct: 77  TIHNLVPFCKEIKKLGYKIKLDTNGTNLKLIKKLISNNLLDFISLDFKAP 126


>gi|157737484|ref|YP_001490167.1| radical SAM domain-containing protein [Arcobacter butzleri RM4018]
 gi|157699338|gb|ABV67498.1| radical SAM domain protein [Arcobacter butzleri RM4018]
          Length = 234

 Score = 51.9 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 13/110 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
                   + +C +C  D   +  ++ G+Y+ +++ D ++++           VL+GGE 
Sbjct: 32  CIVWHISCNMRCSYCYND--NLVFSRIGKYSHNEVLDFLKKRVTLLSA----VVLSGGEA 85

Query: 96  LLQVDVPLIQALNKRGFEIAVETNGT-------IEPPQGIDWICVSPKAG 138
            +   VP  + + K G++I ++TNGT       +     +D+I +  KA 
Sbjct: 86  TIHNLVPFCKEIKKLGYKIKLDTNGTNLKLIKKLISNNLLDFISLDFKAP 135


>gi|15894268|ref|NP_347617.1| pyruvate-formate-lyase-activating enzyme [Clostridium
           acetobutylicum ATCC 824]
 gi|15023888|gb|AAK78957.1|AE007614_5 Pyruvate-formate-lyase-activating enzyme [Clostridium
           acetobutylicum ATCC 824]
 gi|325508395|gb|ADZ20031.1| Pyruvate-formate-lyase-activating enzyme [Clostridium
           acetobutylicum EA 2018]
          Length = 237

 Score = 51.9 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC L           +C FC   DT         G   + ++L   ++      
Sbjct: 22  VF--FQGCRL-----------RCAFCHNPDT----WNVNSGEEISAEELMLKVKRYKNYF 64

Query: 82  EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
           +K G     +GGEPL+Q    +  ++   + G    V+T G
Sbjct: 65  DKSGGGVTCSGGEPLMQPEFLLEFLKLCKENGINTVVDTAG 105


>gi|4127321|emb|CAA10042.1| NrdG protein [Ralstonia eutropha H16]
          Length = 256

 Score = 51.9 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 61/196 (31%), Gaps = 55/196 (28%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           GR+A  VFC   GC             +C +C        G    R         +    
Sbjct: 53  GRLAAVVFC--QGCP-----------WRCGYC-----HNPGLLDARAPSSIAWADVLAFL 94

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
              +      V +GGEP LQ  +   I  +  RGFE+A+ T G            +DWI 
Sbjct: 95  QARQGLLDGVVFSGGEPTLQGALAGAIADVQARGFEVALHTAGMYPDRLPAILPQLDWIG 154

Query: 133 VSPKAG-----CDLKIKGGQE-----LK-------------------LVFPQVNVSPENY 163
           +  KA         ++ G  E     L+                       +++   E+ 
Sbjct: 155 LDLKAPLHRYDAITRVPGSGERAWESLRHWVASDVAGECRTTWHAGMFDIAELHALAESI 214

Query: 164 IGFDFERFSLQPMDGP 179
                + ++LQ   G 
Sbjct: 215 AALGVKHWALQECRGS 230


>gi|288942005|ref|YP_003444245.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Allochromatium vinosum DSM 180]
 gi|288897377|gb|ADC63213.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Allochromatium vinosum DSM 180]
          Length = 245

 Score = 51.9 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 42/124 (33%), Gaps = 33/124 (26%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VFC   GC             +CR+C           G   +   +  LI+   I     
Sbjct: 40  VFC--QGCP-----------WRCRYC---------QNGDLLDTTAVESLIDWADIRAFLR 77

Query: 85  GRY-----CVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTI-----EPPQGIDWICV 133
            R       V +GGEP +Q      ++     G+ I + T+G            IDW+ +
Sbjct: 78  QRVGLLDAVVFSGGEPTVQTALGAAMRETRALGYRIGLHTSGAYPERLRPLLSLIDWVGL 137

Query: 134 SPKA 137
             KA
Sbjct: 138 DIKA 141


>gi|187929187|ref|YP_001899674.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Ralstonia pickettii 12J]
 gi|187726077|gb|ACD27242.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Ralstonia pickettii 12J]
          Length = 237

 Score = 51.9 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 28/128 (21%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G++A  VF   +GC             +C +C         T+    + D +   ++ + 
Sbjct: 35  GQLAAVVFV--AGCP-----------WRCHYC---HNPHLQTRTRTLDWDDVFAFLQRRK 78

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
              +      V +GGEPL +  +P LI+ +   G++I + T G            +DW+ 
Sbjct: 79  GLLDA----VVFSGGEPLSEPHLPQLIRDVRALGYKIGLHTGGIYPARLADVLPQVDWVG 134

Query: 133 VSPKAGCD 140
           +  K    
Sbjct: 135 LDIKTSAP 142


>gi|113969835|ref|YP_733628.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sp. MR-4]
 gi|113884519|gb|ABI38571.1| pyruvate formate-lyase activating enzyme [Shewanella sp. MR-4]
          Length = 246

 Score = 51.9 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 60/195 (30%), Gaps = 44/195 (22%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F T+ G G          RF     GC             +C++C   DT       
Sbjct: 10  VESFGTVDGPG---------IRFITFMQGC-----------LMRCQYCHNRDT----WDL 45

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117
             G    VD+L   I       +        +GGE +LQ +    L +A  K G    ++
Sbjct: 46  DGGKEVQVDELMSQIISYRPFLDASNGGVTASGGEAILQAEFVAELFKACKKEGIHTCLD 105

Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177
           TNG +     +           D  +     + L   Q+N      +       +LQ  +
Sbjct: 106 TNGFVRKYTPV----------IDELLDNTDLVLLDIKQMNDDKHIELTKVSNHRTLQFAE 155

Query: 178 GPFLEENTNLAISYC 192
               + N    I Y 
Sbjct: 156 Y-LAKRNQPTWIRYV 169


>gi|226951033|ref|YP_002806124.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|226843056|gb|ACO85722.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 278

 Score = 51.9 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 64/175 (36%), Gaps = 38/175 (21%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDT--------------DF 54
           F ++ G G      A+F  F GCN       +  +   C+ C T              D+
Sbjct: 12  FSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDY 66

Query: 55  VGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           V     K               G R     + ++I++   T         ++GGE  LQ 
Sbjct: 67  VKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKKILKTKPFISG-ITVSGGECTLQK 125

Query: 100 D--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
           D  + L + +   G  I V+TNG+++  +      +   A  D+K    +E K++
Sbjct: 126 DFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMVDVKSFDNEEHKML 180


>gi|168181046|ref|ZP_02615710.1| radical SAM domain protein [Clostridium botulinum NCTC 2916]
 gi|182668158|gb|EDT80137.1| radical SAM domain protein [Clostridium botulinum NCTC 2916]
          Length = 279

 Score = 51.9 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 64/175 (36%), Gaps = 38/175 (21%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDT--------------DF 54
           F ++ G G      A+F  F GCN       +  +   C+ C T              D+
Sbjct: 13  FSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDY 67

Query: 55  VGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           V     K               G R     + ++I++   T         ++GGE  LQ 
Sbjct: 68  VKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKKILKTKPFISG-ITVSGGECTLQK 126

Query: 100 D--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
           D  + L + +   G  I V+TNG+++  +      +   A  D+K    +E K++
Sbjct: 127 DFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMVDVKSFDNEEHKML 181


>gi|323487361|ref|ZP_08092660.1| hypothetical protein HMPREF9474_04411 [Clostridium symbiosum
           WAL-14163]
 gi|323399322|gb|EGA91721.1| hypothetical protein HMPREF9474_04411 [Clostridium symbiosum
           WAL-14163]
          Length = 230

 Score = 51.9 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 24/101 (23%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWIT 80
             +F    GCN            +C FC          +G  G ++ +++   ++++   
Sbjct: 20  ATIF--LGGCNF-----------RCPFC----HNSDLLEGMDGLFSKEEVLTFLKKRAGI 62

Query: 81  GEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
            E       +TGGEP L  D+ P I+ +   G  + ++TNG
Sbjct: 63  LEG----VCITGGEPTLHRDLEPFIREIRSLGLLVKLDTNG 99


>gi|312195497|ref|YP_004015558.1| hopanoid biosynthesis associated radical SAM protein HpnH [Frankia
           sp. EuI1c]
 gi|311226833|gb|ADP79688.1| hopanoid biosynthesis associated radical SAM protein HpnH [Frankia
           sp. EuI1c]
          Length = 398

 Score = 51.6 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C             R  V+Q    ++E             L 
Sbjct: 38  CNL-----------ACVGCG-KIQHTADVLKRRMPVEQALAAVDECG------APVVCLA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   V  ++  L +R   + + TN  +  P+ ID +  SP     + I G +E
Sbjct: 80  GGEPLMHPQVEEIVAGLVQRKKFVYLCTN-ALLLPKKIDKLRPSPYLSLAVHIDGLEE 136


>gi|237727284|ref|ZP_04557765.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229434140|gb|EEO44217.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 368

 Score = 51.6 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 50  CDTDFVGIQ----GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104
           CD  F+  +       GG   + Q  D  E+    G     + +LTGGEP+L      L 
Sbjct: 39  CDMCFIHTERNVVERHGGLLPLQQWLDWAEQLQDMG---TLFILLTGGEPMLYPHFKELY 95

Query: 105 QALNKRGFEIAVETNGTI 122
             L + GF + + TNGT+
Sbjct: 96  TRLREMGFILTLNTNGTL 113


>gi|167758384|ref|ZP_02430511.1| hypothetical protein CLOSCI_00724 [Clostridium scindens ATCC 35704]
 gi|167664281|gb|EDS08411.1| hypothetical protein CLOSCI_00724 [Clostridium scindens ATCC 35704]
          Length = 241

 Score = 51.6 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 26/118 (22%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
           E F ++ G G    R  +F   SGC           + +C+FC   DT         G  
Sbjct: 10  ESFGSVDGPGV---RYVIF--TSGC-----------AMRCQFCHNPDT----WNKRAGTP 49

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           Y  D+L +   +       +G    ++GGEPLLQ+D  + L +   + G   A++T+G
Sbjct: 50  YTADELIEKALKYRSYWGSKGG-ITVSGGEPLLQIDFLLELFERARQEGIHTALDTSG 106


>gi|15669412|ref|NP_248222.1| pyruvate formate-lyase activating enzyme [Methanocaldococcus
           jannaschii DSM 2661]
 gi|37999505|sp|Q58624|Y1227_METJA RecName: Full=Uncharacterized protein MJ1227
 gi|1591858|gb|AAB99230.1| pyruvate formate-lyase activating enzyme (act) [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 240

 Score = 51.6 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 30/125 (24%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +F    GCN+           +C +C      ++  +G    V+++ + I+  +      
Sbjct: 24  IF--LYGCNM-----------KCPYCHNLKFMLEHKRG--MTVEEIFNDIDFLFADA--- 65

Query: 85  GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSP 135
               V++GGEP LQ D  + + +   ++GF + ++TNGT             ID++ +  
Sbjct: 66  ---IVISGGEPTLQKDAVIEIARYAKEKGFPVKIDTNGTHPEVIEELIKNKLIDYVAIDV 122

Query: 136 KAGCD 140
           K   D
Sbjct: 123 KCRFD 127


>gi|52548364|gb|AAU82213.1| pyruvate-formate lyase-activating enzyme [uncultured archaeon
           GZfos11H11]
          Length = 230

 Score = 51.6 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 18/100 (18%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF    GCN            +C +C       +      ++     + I     T   +
Sbjct: 22  VF--TQGCNF-----------RCPYC----HNPELVDPKLFSHPIAEEDILAFLQTRRGK 64

Query: 85  GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
                +TGGEP LQ D+    + +    F + ++TNG+  
Sbjct: 65  LDAVEITGGEPTLQPDLIDFTKKIKSLNFLVKLDTNGSNP 104


>gi|114047065|ref|YP_737615.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sp. MR-7]
 gi|113888507|gb|ABI42558.1| pyruvate formate-lyase activating enzyme [Shewanella sp. MR-7]
          Length = 246

 Score = 51.6 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 60/195 (30%), Gaps = 44/195 (22%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F T+ G G          RF     GC             +C++C   DT       
Sbjct: 10  VESFGTVDGPG---------IRFITFMQGC-----------LMRCQYCHNRDT----WDL 45

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117
             G    VD+L   I       +        +GGE +LQ +    L +A  K G    ++
Sbjct: 46  DGGKEVQVDELMSQIISYRPFLDASNGGVTASGGEAILQAEFVAELFKACKKEGIHTCLD 105

Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177
           TNG +     +           D  +     + L   Q+N      +       +LQ  +
Sbjct: 106 TNGFVRKYTPV----------IDELLDNTDLVLLDIKQMNDDKHIELTKVSNHRTLQFAE 155

Query: 178 GPFLEENTNLAISYC 192
               + N    I Y 
Sbjct: 156 Y-LAKRNQPTWIRYV 169


>gi|157961496|ref|YP_001501530.1| pyruvate formate lyase-activating enzyme 1 [Shewanella pealeana
           ATCC 700345]
 gi|157846496|gb|ABV86995.1| pyruvate formate-lyase activating enzyme [Shewanella pealeana ATCC
           700345]
          Length = 246

 Score = 51.6 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 60/194 (30%), Gaps = 44/194 (22%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F T+ G G          RF     GC             +C +C   DT        
Sbjct: 11  ESFGTVDGPG---------IRFITFMQGC-----------LMRCLYCHNRDT----WDLH 46

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
            G    VD L   I       E  G     +GGE ++Q D    L +A  K G    ++T
Sbjct: 47  GGKEMKVDDLMSQIISYRPFLEASGGGVTASGGEAIIQADFVAELFKACKKEGIHTCLDT 106

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
           NG +     I           D  +     + L   Q++ +    +     + +LQ  + 
Sbjct: 107 NGFVRKHTPI----------IDELLDNTDLVMLDIKQIDDAKHIDLTNVSNQRTLQFAE- 155

Query: 179 PFLEENTNLAISYC 192
              +      I Y 
Sbjct: 156 HLHKRGQKAWIRYV 169


>gi|146303294|ref|YP_001190610.1| radical SAM domain-containing protein [Metallosphaera sedula DSM
           5348]
 gi|145701544|gb|ABP94686.1| Radical SAM domain protein [Metallosphaera sedula DSM 5348]
          Length = 366

 Score = 51.6 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 25/111 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C        G+    +    L+  I       +   ++ +L+
Sbjct: 39  CNL-----------RCLHC------YSGSGTQLFQDLPLSTWINAVKQASDMGVKHILLS 81

Query: 92  GGEPLLQVDVPLIQALN-KRGFEIAVETNGTI-------EPPQGIDWICVS 134
           GGEPL + D+ LI     +RG  + + TNGT+       E    +D++ VS
Sbjct: 82  GGEPLARRDLHLIAREAWERGIRVELSTNGTMLTRERLEELKNYVDYVGVS 132


>gi|125973165|ref|YP_001037075.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium thermocellum ATCC 27405]
 gi|256003963|ref|ZP_05428949.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium thermocellum DSM 2360]
 gi|281417360|ref|ZP_06248380.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium thermocellum JW20]
 gi|125713390|gb|ABN51882.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium thermocellum ATCC 27405]
 gi|255992091|gb|EEU02187.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium thermocellum DSM 2360]
 gi|281408762|gb|EFB39020.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium thermocellum JW20]
 gi|316940606|gb|ADU74640.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium thermocellum DSM 1313]
          Length = 229

 Score = 51.6 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 24/116 (20%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCN+            C +C         + G    +D   D + E  +         V+
Sbjct: 26  GCNM-----------NCFYC---HNKTLISGGNEEFIDN--DEVLELLVKRRGFIDGVVI 69

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSPKAG 138
           +GGEP LQ D+   ++ +   G+ + ++TNGT             +D+I +  KA 
Sbjct: 70  SGGEPTLQKDLEGFLEKVKSLGYAVKLDTNGTNPHVVENLVQNGLVDYIAMDVKAP 125


>gi|218283500|ref|ZP_03489490.1| hypothetical protein EUBIFOR_02080 [Eubacterium biforme DSM 3989]
 gi|218215768|gb|EEC89306.1| hypothetical protein EUBIFOR_02080 [Eubacterium biforme DSM 3989]
          Length = 294

 Score = 51.6 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 76/243 (31%), Gaps = 61/243 (25%)

Query: 3   LYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSA------------ 45
           +  +   E F T  G G       VF    GC L   W    +                 
Sbjct: 1   MIRVSNIEKFATHDGPGIRT---TVF--LKGCPLHCPWCANPETWKMEPTLLHDERKCVQ 55

Query: 46  ----------------------QCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
                                 +C +C    D          G    +D++   + +   
Sbjct: 56  CKTCMYMCAQEAISFPFQWDIDKCIYCKKCEDACLQDAISFVGKDIEIDEVIKEVLKDKD 115

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP---QGIDWICVS 134
             ++      ++GGEP +Q D  + L++   + G  +AVET G        Q + +I + 
Sbjct: 116 YFDQSNGGVTISGGEPFMQFDAFLELVKQCKENGLHVAVETTGNYSLDKLEQALPYIDL- 174

Query: 135 PKAGCDLKIKGGQELKLVF-PQVNVSPENYIGFDF----ERFSLQPMDGPFLEENTNLAI 189
                DLK    ++LK V    +++   N+         +     P+   F ++     I
Sbjct: 175 --FLMDLKHLDAKKLKDVTGANLDLILNNFRYLAKYCPNKVIVRMPVIPRFNDDICEEVI 232

Query: 190 SYC 192
            +C
Sbjct: 233 KFC 235


>gi|28897766|ref|NP_797371.1| pyruvate formate lyase-activating enzyme 1 [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153837337|ref|ZP_01990004.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           AQ3810]
 gi|260363808|ref|ZP_05776563.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           K5030]
 gi|260876932|ref|ZP_05889287.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           AN-5034]
 gi|260897926|ref|ZP_05906422.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           Peru-466]
 gi|260903461|ref|ZP_05911856.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           AQ4037]
 gi|28805979|dbj|BAC59255.1| pyruvate formate-lyase 1 activating enzyme [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149749368|gb|EDM60141.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           AQ3810]
 gi|308085486|gb|EFO35181.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           Peru-466]
 gi|308093910|gb|EFO43605.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           AN-5034]
 gi|308110360|gb|EFO47900.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           AQ4037]
 gi|308113908|gb|EFO51448.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           K5030]
 gi|328473257|gb|EGF44105.1| pyruvate formate lyase-activating enzyme 1 [Vibrio parahaemolyticus
           10329]
          Length = 246

 Score = 51.6 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 54/161 (33%), Gaps = 28/161 (17%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT         G    V+++    +      
Sbjct: 25  VF--LQGC-----------LMRCKYCHNRDT----WDTHDGKEVTVEEIIAEAKSYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAG 138
              G     +GGE +LQ +      +A +  G    ++TNG I    + ID +       
Sbjct: 68  NASGGGITCSGGEAMLQPEFVRDFFRAAHAEGIHTCLDTNGYIRKHTEVIDEVL----DA 123

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
            DL +   + +K    Q  +   N    DF R  L  +   
Sbjct: 124 TDLVMLDIKHMKDEIHQDFIGVSNRRTLDFAR-YLHKIGQK 163


>gi|117920002|ref|YP_869194.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sp. ANA-3]
 gi|117612334|gb|ABK47788.1| pyruvate formate-lyase activating enzyme [Shewanella sp. ANA-3]
          Length = 246

 Score = 51.6 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 60/195 (30%), Gaps = 44/195 (22%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F T+ G G          RF     GC             +C++C   DT       
Sbjct: 10  VESFGTVDGPG---------IRFITFMQGC-----------LMRCQYCHNRDT----WDL 45

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117
             G    VD+L   I       +        +GGE +LQ +    L +A  K G    ++
Sbjct: 46  DGGKEVQVDELMSQIISYRPFLDASNGGVTASGGEAILQAEFVAELFKACKKEGIHTCLD 105

Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177
           TNG +     +           D  +     + L   Q+N      +       +LQ  +
Sbjct: 106 TNGFVRKYTPV----------IDELLDNTDLVLLDIKQMNDDKHIELTKVSNHRTLQFAE 155

Query: 178 GPFLEENTNLAISYC 192
               + N    I Y 
Sbjct: 156 Y-LAKRNQPTWIRYV 169


>gi|293605242|ref|ZP_06687628.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Achromobacter piechaudii ATCC 43553]
 gi|292816298|gb|EFF75393.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Achromobacter piechaudii ATCC 43553]
          Length = 264

 Score = 51.6 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 28/127 (22%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G++A  VF   SGC             +C +C         T+  RY+       +E + 
Sbjct: 62  GQLAAVVFI--SGCP-----------WRCHYC---HNTELQTRAARYDWRDARAFLESRA 105

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
              +      V +GGEPL +  +P LI+ + + G+ + + T G          + +DWI 
Sbjct: 106 GLLDA----VVFSGGEPLSEPRLPSLIRDVRRMGYRVGLHTAGIYPLRLADVMRHLDWIG 161

Query: 133 VSPKAGC 139
           +  KA  
Sbjct: 162 LDIKADA 168


>gi|281355888|ref|ZP_06242381.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Victivallis vadensis ATCC BAA-548]
 gi|281317257|gb|EFB01278.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Victivallis vadensis ATCC BAA-548]
          Length = 238

 Score = 51.6 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 18/100 (18%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF    GCNL           +C FC    +        +    +    +E +    E  
Sbjct: 22  VF--TGGCNL-----------RCPFCHNPCLVFDPASQPKVTEKEFFGFLERRKGLLEG- 67

Query: 85  GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
               V++GGEP+LQ D+ P ++ + K GF   V++NGT  
Sbjct: 68  ---VVISGGEPMLQPDLVPFVERIRKSGFLAKVDSNGTFP 104


>gi|262038830|ref|ZP_06012179.1| pyruvate formate-lyase-activating enzyme [Leptotrichia goodfellowii
           F0264]
 gi|261747163|gb|EEY34653.1| pyruvate formate-lyase-activating enzyme [Leptotrichia goodfellowii
           F0264]
          Length = 243

 Score = 51.6 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 26/153 (16%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+++F  F GCN             C +C   +T  V  +       +V ++ D+++E  
Sbjct: 20  RLSIF--FQGCNF-----------DCLYCHNPETIEVFGENKVPEEISVMEIDDILKEIE 66

Query: 79  ITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKR--GFEIAVETNGTIEP--PQGIDWIC 132
                      ++GGE  LQ      L +A+ KR       V++NG+I        +++ 
Sbjct: 67  EVAPFISG-ITVSGGECSLQWKFLTELFKAVKKRWERMTCFVDSNGSIPLWTEDKKEFLS 125

Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG 165
           V+ K   D+K     E   +   V VS EN I 
Sbjct: 126 VTDKIMLDIK--AFDEKDHILM-VGVSNENVIK 155


>gi|194333737|ref|YP_002015597.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Prosthecochloris aestuarii DSM 271]
 gi|194311555|gb|ACF45950.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Prosthecochloris aestuarii DSM 271]
          Length = 251

 Score = 51.6 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 29/125 (23%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY- 87
            +GCNL           +C +C                + +L     E  +T     R  
Sbjct: 43  TAGCNL-----------RCIYC------HNPELVLPDRIQRLGAEERETIVTWLVRNRML 85

Query: 88  ---CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSPK 136
               V+TGGEPLL   +P L+  + + G  + ++TNGT           + +D + +  K
Sbjct: 86  LDAVVVTGGEPLLHPALPGLLGWIRELGLAVKLDTNGTFPSRLQAILTEELVDHVAMDLK 145

Query: 137 AGCDL 141
           A  D 
Sbjct: 146 APLDY 150


>gi|269967633|ref|ZP_06181683.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus
           40B]
 gi|269827720|gb|EEZ82004.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus
           40B]
          Length = 246

 Score = 51.6 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 53/162 (32%), Gaps = 36/162 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT         G    V+++    +      
Sbjct: 25  VF--LQGC-----------LMRCKYCHNRDT----WDTHDGKEVTVEEIISEAKSYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWICVS 134
              G     +GGE +LQ +      +A    G    ++TNG     T    + +D     
Sbjct: 68  NASGGGVTCSGGEAMLQPEFVRDFFRAAKTEGIHTCLDTNGYVRKHTDVIDEVLD----- 122

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
                DL +   + +K    Q  +   N    DF R  LQ +
Sbjct: 123 ---ATDLVMLDIKHMKDEVHQDLIGVSNRRTLDFAR-YLQKI 160


>gi|291541970|emb|CBL15080.1| pyruvate formate-lyase 1-activating enzyme [Ruminococcus bromii
           L2-63]
          Length = 251

 Score = 51.6 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 21/115 (18%)

Query: 8   EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
           E F ++ G G        +F   SGC           + +C+FC              Y 
Sbjct: 14  ETFGSVDGPGVRFV----IF--LSGC-----------AMRCQFCHNPDTWKHDENTVEYT 56

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
            D+L +          K      ++GGEPLLQ+D  + L +   K+G    ++T+
Sbjct: 57  ADELLNKALAYRPY-WKNKGGITVSGGEPLLQIDFLLDLFKKAKKQGVNTCIDTS 110


>gi|168187740|ref|ZP_02622375.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum C
           str. Eklund]
 gi|169294396|gb|EDS76529.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum C
           str. Eklund]
          Length = 235

 Score = 51.6 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 23/101 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC L           +C FC   DT         G +   ++L   I       
Sbjct: 24  VF--LQGCPL-----------RCSFCHNPDT----WNFNIGDKITPEKLVKKIIRFKPYF 66

Query: 82  EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120
           +  G     +GGE L+Q +  L  ++   +     A++T+G
Sbjct: 67  KNNGG-VTFSGGESLMQPEFLLKTLKLCKENNIHTAIDTSG 106


>gi|126460429|ref|YP_001056707.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126250150|gb|ABO09241.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548]
          Length = 261

 Score = 51.6 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 14/91 (15%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL  G      +       T FV    + G     +++A  ++E  I   +  R   +
Sbjct: 53  GCNLRCGMCWAWRN-------TSFVL---SGGVWMAPEEVAARLDE--IAKARGFRQVRI 100

Query: 91  TGGEPLLQVDVPL-IQALNKRGFEIAVETNG 120
           +GGEPL+     L +  L  +   I VETNG
Sbjct: 101 SGGEPLIAPRHLLEVADLLSKYIFI-VETNG 130


>gi|311896173|dbj|BAJ28581.1| putative pyruvate formate-lyase-activating enzyme [Kitasatospora
           setae KM-6054]
          Length = 256

 Score = 51.6 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 23/102 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF   +GC L            C +C   DT  +      G R   D++     +     
Sbjct: 37  VF--LAGCPL-----------NCLYCHNPDTMRMR----NGTRTGADEVVAEASKYTAFI 79

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQAL-NKRGFEIAVETNG 120
              G    ++GGEPLLQ D    L     ++ G   A++T+G
Sbjct: 80  HAAGGGATVSGGEPLLQPDFAGELFHRFKHELGLHTALDTSG 121


>gi|268324698|emb|CBH38286.1| conserved hypothetical protein, radical SAM superfamily [uncultured
           archaeon]
          Length = 271

 Score = 51.6 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 16/94 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            SGCN            +C+ C   F   +   G +  V+QL  L+++            
Sbjct: 21  LSGCNF-----------KCKGC---FSLARNPIGEQMTVEQLISLVKDSASGCYSALEEA 66

Query: 89  VLTGGEPLL--QVDVPLIQALNKRGFEIAVETNG 120
           V+TGGEP L     + L+  L +    I ++TNG
Sbjct: 67  VITGGEPTLNRHYLIDLVSQLKEFVGWIVLDTNG 100


>gi|2500056|sp|Q46267|PFLA_CLOPA RecName: Full=Pyruvate formate-lyase-activating enzyme;
           Short=PFL-activating enzyme; AltName:
           Full=Formate-C-acetyltransferase-activating enzyme
 gi|1072362|emb|CAA63749.1| pyruvate-formate-lyase-activating enzyme [Clostridium pasteurianum]
          Length = 238

 Score = 51.6 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC L           +C +C   DT         G     ++L   +       
Sbjct: 24  VF--FQGCGL-----------RCSYCHNPDT----WNMAGGKELTAEELLKKLLRFKPYF 66

Query: 82  EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
           ++ G     +GGE LLQ    + +++   ++G   A++T G
Sbjct: 67  DRSGGGVTFSGGEVLLQPEFLIDILKLCKEQGIHTAIDTAG 107


>gi|145630302|ref|ZP_01786083.1| hypothetical protein CGSHi22421_06882 [Haemophilus influenzae
           R3021]
 gi|144984037|gb|EDJ91474.1| hypothetical protein CGSHi22421_06882 [Haemophilus influenzae
           R3021]
          Length = 262

 Score = 51.6 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 30/151 (19%)

Query: 3   LYSIKEIFLTL---------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD 53
           + ++ EIF+ L         +G+G      ++F    GC L            C +C   
Sbjct: 1   MTALSEIFVPLHRIIPFSNVEGQGNRT---SIF--LQGCKL-----------NCLYCHNP 44

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRG 111
               + T+  +         + +Q +      R   ++GGEP +     VPL +AL  +G
Sbjct: 45  ETIPRYTESAKLVS---LQYLYDQVMEATPFIRGVTVSGGEPTIHHKKLVPLFKALRSKG 101

Query: 112 FEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
               ++++G  E  +    I V+ K   DLK
Sbjct: 102 LTCYLDSSGFFEFDRIRSLIDVTDKFLFDLK 132


>gi|150015206|ref|YP_001307460.1| glycyl-radical activating family protein [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901671|gb|ABR32504.1| glycyl-radical enzyme activating protein family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 311

 Score = 51.6 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 49/158 (31%), Gaps = 54/158 (34%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------QCRFCD------- 51
           F T  GEG       +F    GC L     Q+               +C  CD       
Sbjct: 18  FSTHDGEGIRT---TIF--LKGCPLKCVWCQNPEGISPKEQLIHFENKCINCDLCIKKCS 72

Query: 52  --------------------------TDFVGIQG--TKGGRYNVDQLADLIEEQWITGEK 83
                                     TD             Y +D++ ++  +     + 
Sbjct: 73  NQSVIRENNKICVVQDKCIDEQNEIVTDICPTGALTMDSKNYTLDEVIEIALKDKAFFKY 132

Query: 84  EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
            G    L+GGEPL Q +  V L++ L + G   A+ET+
Sbjct: 133 GGG-VTLSGGEPLYQKEFVVVLLKMLKEAGINTAIETS 169


>gi|212634770|ref|YP_002311295.1| pyruvate formate lyase-activating enzyme 1 [Shewanella
           piezotolerans WP3]
 gi|212556254|gb|ACJ28708.1| Pyruvate formate-lyase 1 activating enzyme [Shewanella
           piezotolerans WP3]
          Length = 246

 Score = 51.6 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 62/194 (31%), Gaps = 44/194 (22%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F T+ G G          RF     GC             +C++C   DT        
Sbjct: 11  ESFGTVDGPG---------IRFITFMQGC-----------LMRCQYCHNRDT----WDLH 46

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
            G    VD+L   I       E  G     +GGE +LQ +    L +A  K G    ++T
Sbjct: 47  GGKEIKVDELMSQIISYRPFLEASGGGVTASGGEAVLQPEFVAELFKACKKEGIHTCLDT 106

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
           NG +     I           D  +     + L   Q+N      +     + +LQ  + 
Sbjct: 107 NGFVRKYTPI----------IDELLDNTDLVLLDIKQINDEKHIDLTKVSNQRTLQFAE- 155

Query: 179 PFLEENTNLAISYC 192
              + N    I Y 
Sbjct: 156 HLHKRNQKTWIRYV 169


>gi|213405157|ref|XP_002173350.1| anaerobic ribonucleoside triphosphate reductase
           [Schizosaccharomyces japonicus yFS275]
 gi|212001397|gb|EEB07057.1| anaerobic ribonucleoside triphosphate reductase
           [Schizosaccharomyces japonicus yFS275]
          Length = 826

 Score = 51.6 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 31/115 (26%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCV 89
           CNL            C +C          +G R  +  + +  +I           +  V
Sbjct: 636 CNL-----------ACPWC----HNGPIVRGKRDSFTAEDVFRIITA------SRHKNLV 674

Query: 90  LTGGEPLLQV-DVPLIQALNKRGFEIAVETNG-------TIEPPQGIDWICVSPK 136
           ++GGEP +    +P ++ L K G  + +++NG       TI   + +D++ +  K
Sbjct: 675 ISGGEPTIHPQLIPFLRLLKKAGISVKLDSNGTSPESLKTIFAEKLVDFVAMDVK 729


>gi|115525179|ref|YP_782090.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Rhodopseudomonas palustris BisA53]
 gi|115519126|gb|ABJ07110.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Rhodopseudomonas palustris BisA53]
          Length = 219

 Score = 51.6 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 42/124 (33%), Gaps = 24/124 (19%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
             VFC   GC              C +C    + +       +   Q+   +E +    +
Sbjct: 26  ATVFC--QGCP-----------WDCSYCHNPHL-LPVMGEAAWPWAQVLAFLERRRGLLD 71

Query: 83  KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPK 136
                 V +GGEP LQ  +P  I  +   GF I + T G            +DW+    K
Sbjct: 72  A----VVFSGGEPTLQTALPQAIATVRAMGFRIGLHTGGAYPRRLAGVLPLLDWVGFDVK 127

Query: 137 AGCD 140
           A  +
Sbjct: 128 APFE 131


>gi|302343932|ref|YP_003808461.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075]
 gi|301640545|gb|ADK85867.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075]
          Length = 338

 Score = 51.6 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 57/169 (33%), Gaps = 29/169 (17%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG-RYCVLTGGEPLLQVD 100
           R +  C FC       + +         + +L+E       ++G R   ++GGEP +   
Sbjct: 23  RCNNNCLFC-----YDKDSPVEALESVSVNELVERTLAEAARQGIRRVGVSGGEPTIYPG 77

Query: 101 V-PLIQALNKRGFEIAVETNG-TIE--------PPQGIDWICVSPKAGCDLKIKGGQELK 150
           +    + L  RG   ++ TNG T++           G+D   VS     DL      E  
Sbjct: 78  IVDFARRLRGRGLATSILTNGRTLKDAAWLEELLDAGVDHFHVS--VHSDL----AHEHD 131

Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199
            V        +   G       L  +D        +L I++      +R
Sbjct: 132 AVTRAPGSFDDTLQG-------LCNIDQARRRRRLDLTIAHVMHRRNYR 173


>gi|229042347|ref|ZP_04190097.1| hypothetical protein bcere0027_4160 [Bacillus cereus AH676]
 gi|229108114|ref|ZP_04237739.1| hypothetical protein bcere0018_4060 [Bacillus cereus Rock1-15]
 gi|228675389|gb|EEL30608.1| hypothetical protein bcere0018_4060 [Bacillus cereus Rock1-15]
 gi|228727006|gb|EEL78213.1| hypothetical protein bcere0027_4160 [Bacillus cereus AH676]
          Length = 243

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +     G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKAAGIHTTIDSSG 107


>gi|168183531|ref|ZP_02618195.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum Bf]
 gi|237796670|ref|YP_002864222.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum Ba4
           str. 657]
 gi|182673365|gb|EDT85326.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum Bf]
 gi|229263272|gb|ACQ54305.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum Ba4
           str. 657]
          Length = 232

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 36/151 (23%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G   + D++   +       
Sbjct: 22  VF--FQGC-----------QLRCVYCHNPDT----WDFNAGIEISSDEVLKKVLRYKPY- 63

Query: 82  EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT-----IEPPQGIDWICVS 134
            K+      +GGEPL+Q    + +++    +G   A++T+G       E  Q +D + + 
Sbjct: 64  FKQVGGITCSGGEPLMQPEFLLEILKKCKNQGIHTALDTSGVGIGNYKEILQYVDLVILD 123

Query: 135 PKAGCDLK--------IKGGQELKLVFPQVN 157
            K   + K        ++   + K V  ++N
Sbjct: 124 IKHIEEEKYISICGKNMEEFNKFKRVVNKLN 154


>gi|30018698|ref|NP_830329.1| pyruvate formate-lyase activating enzyme [Bacillus cereus ATCC
           14579]
 gi|229125942|ref|ZP_04254967.1| hypothetical protein bcere0015_4060 [Bacillus cereus BDRD-Cer4]
 gi|29894239|gb|AAP07530.1| Pyruvate formate-lyase activating enzyme [Bacillus cereus ATCC
           14579]
 gi|228657600|gb|EEL13413.1| hypothetical protein bcere0015_4060 [Bacillus cereus BDRD-Cer4]
          Length = 243

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +     G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKAAGIHTTIDSSG 107


>gi|119774634|ref|YP_927374.1| pyruvate formate lyase-activating enzyme 1 [Shewanella amazonensis
           SB2B]
 gi|119767134|gb|ABL99704.1| (Formate-C-acetyltransferase)-activating enzyme [Shewanella
           amazonensis SB2B]
          Length = 246

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 61/196 (31%), Gaps = 46/196 (23%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F T+ G G          RF     GC             +C++C   DT       
Sbjct: 10  VESFGTVDGPG---------IRFITFMQGC-----------LMRCQYCHNRDT----WDL 45

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117
             G    VD+L   I       +  G     +GGE +LQ +    L +A    G    ++
Sbjct: 46  DGGKEMQVDELMSQILSYRPFLDASGGGVTASGGEAILQAEFVADLFKACRAEGIHTCLD 105

Query: 118 TNG-TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
           TNG   +    ID +           +     + L    ++ +    +       +LQ  
Sbjct: 106 TNGFVRKYTPAIDVL-----------LDNTDLVLLDIKHIDDAKHQDLTKVSNHRTLQFA 154

Query: 177 DGPFLEENTNLAISYC 192
           +    + +    I Y 
Sbjct: 155 EY-LAKRDQKTWIRYV 169


>gi|309389450|gb|ADO77330.1| pyruvate formate-lyase activating enzyme [Halanaerobium praevalens
           DSM 2228]
          Length = 242

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 24/109 (22%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C++C   DT     +   G + +   L   I +   
Sbjct: 20  IRFVVFTQGCPL-----------RCQYCHNPDT----WKLKAGTKVSTSTLIKKIIKIKP 64

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQ 126
             E  G    ++GGEP +Q +  + L++         A++T+G +E  Q
Sbjct: 65  YLEGAGGGLTISGGEPTMQPEFTLDLLKKAKAENLHTALDTSGFVEIEQ 113


>gi|212694739|ref|ZP_03302867.1| hypothetical protein BACDOR_04271 [Bacteroides dorei DSM 17855]
 gi|237710987|ref|ZP_04541468.1| radical SAM domain-containing protein [Bacteroides sp. 9_1_42FAA]
 gi|212662718|gb|EEB23292.1| hypothetical protein BACDOR_04271 [Bacteroides dorei DSM 17855]
 gi|229454831|gb|EEO60552.1| radical SAM domain-containing protein [Bacteroides sp. 9_1_42FAA]
          Length = 368

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 8/78 (10%)

Query: 50  CDTDFVGIQGT----KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104
           CD  F+  + +     GG   + Q  D  E+    G     + +LTGGEP+L      L 
Sbjct: 39  CDMCFIRTERSVVERHGGLSPLQQWLDWAEQLQDMG---TLFILLTGGEPMLYPHFKELY 95

Query: 105 QALNKRGFEIAVETNGTI 122
             L + GF + + TNGT+
Sbjct: 96  TRLREMGFILTLNTNGTL 113


>gi|169333654|ref|ZP_02860847.1| hypothetical protein ANASTE_00038 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259648|gb|EDS73614.1| hypothetical protein ANASTE_00038 [Anaerofustis stercorihominis DSM
           17244]
          Length = 303

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 9/132 (6%)

Query: 45  AQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDV 101
           ++C  C D  +       G    +D++     E  +  E       L+GGEPL Q     
Sbjct: 87  SKCMLCVDNCYATALKVYGKNLTIDEIVSKCMEDKLFYETSNGGVTLSGGEPLFQFEAAH 146

Query: 102 PLIQALNKRGFEIAVETNG--TIEPPQGI-DWICVSPKAGCDLKIKGGQELKLVFPQVNV 158
            ++  L  +G   A+ET G  + E  + I D++ +      D+K     + K +    N 
Sbjct: 147 EILSRLKSKGIHTAIETTGYVSNENIKKIMDYVDL---FLFDIKAVNIDKHKRLTGVDNH 203

Query: 159 SPENYIGFDFER 170
              + + +  E 
Sbjct: 204 IIHDNLRYLDEH 215


>gi|265750577|ref|ZP_06086640.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263237473|gb|EEZ22923.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 368

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 8/78 (10%)

Query: 50  CDTDFVGIQGT----KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104
           CD  F+  + +     GG   + Q  D  E+    G     + +LTGGEP+L      L 
Sbjct: 39  CDMCFIRTERSVVERHGGLSPLQQWLDWAEQLQDMG---TLFILLTGGEPMLYPHFKELY 95

Query: 105 QALNKRGFEIAVETNGTI 122
             L + GF + + TNGT+
Sbjct: 96  TRLREMGFILTLNTNGTL 113


>gi|225569332|ref|ZP_03778357.1| hypothetical protein CLOHYLEM_05414 [Clostridium hylemonae DSM
           15053]
 gi|225162131|gb|EEG74750.1| hypothetical protein CLOHYLEM_05414 [Clostridium hylemonae DSM
           15053]
          Length = 260

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 19/109 (17%)

Query: 15  GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-VGIQGTKGGRYNVDQLADL 73
           GEG       +F   +GC L            C +C       +         V+++ D 
Sbjct: 30  GEGIRTN---IF--LAGCPL-----------ACAWCSNPEGQSLHNAMTSCMTVEEVVDK 73

Query: 74  IEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG 120
           +++Q I     G     +GGE  +Q +    L   L   G  +A+ET G
Sbjct: 74  VKKQMIFYRISGGGVTFSGGEATVQQEFLRRLSYRLYDMGISLAIETCG 122


>gi|194437731|ref|ZP_03069826.1| pyruvate-formate lyase-activating enzyme [Escherichia coli 101-1]
 gi|194423227|gb|EDX39219.1| pyruvate-formate lyase-activating enzyme [Escherichia coli 101-1]
          Length = 305

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           KG R +V  +   +E++     + G    L+GGEPL Q +    L++A   +G+   +ET
Sbjct: 107 KGKRMSVTAVMRELEKEENLYRRSGGGITLSGGEPLAQPEFARELLKACKAKGWHTTIET 166

Query: 119 NG 120
           +G
Sbjct: 167 SG 168


>gi|114568857|ref|YP_755537.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Maricaulis maris MCS10]
 gi|114339319|gb|ABI64599.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Maricaulis maris MCS10]
          Length = 239

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 30/123 (24%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC L           +C +C   D   V       GR    ++A  ++E+    
Sbjct: 30  VF--LQGCPL-----------RCVYCHNPDLLPVHADTEIDGR----EIAARLKERRGLL 72

Query: 82  EKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSP 135
           +      V +GGEPL+Q      +  +   GF++ + T+G            +DW+    
Sbjct: 73  QA----VVFSGGEPLVQSGLAAAMDHVRSLGFKVGLHTSGISPDRFQRLRDRVDWVGFDI 128

Query: 136 KAG 138
           KA 
Sbjct: 129 KAP 131


>gi|288927096|ref|ZP_06420984.1| pyruvate formate-lyase 1-activating enzyme [Prevotella buccae D17]
 gi|288336123|gb|EFC74516.1| pyruvate formate-lyase 1-activating enzyme [Prevotella buccae D17]
          Length = 243

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 34/121 (28%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F ++ G G          RF     GC +           +CRFC   D+   G+   
Sbjct: 13  ETFGSVDGPG---------IRFLIFLQGCPM-----------RCRFCHNPDSWQTGV--- 49

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
            G +   D+L D   E + +         ++GGE L+Q+D    L +  ++RG    ++T
Sbjct: 50  -GEKMTTDELLDR-AEHYRSYWGREGGITVSGGEALMQIDFLTELFRKAHERGINTCLDT 107

Query: 119 N 119
           +
Sbjct: 108 S 108


>gi|19703606|ref|NP_603168.1| pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296328725|ref|ZP_06871240.1| pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|19713712|gb|AAL94467.1| Pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296154162|gb|EFG94965.1| pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 243

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 26/103 (25%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C +C   DT        K   Y  +++   + E   
Sbjct: 19  IRFVVFMQGCPL-----------RCLYCHNVDT---WELKDKNYIYTPEEV---LAELNK 61

Query: 80  TGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120
                     ++GGEPLLQ    L   +   + G   A++T+G
Sbjct: 62  VKAFLSGGITISGGEPLLQSSFVLEVFKLCKENGIHTALDTSG 104


>gi|296109167|ref|YP_003616116.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanocaldococcus infernus ME]
 gi|295433981|gb|ADG13152.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanocaldococcus infernus ME]
          Length = 228

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 27/118 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +F   SGCN            +C +C      ++     ++++  + + ++       + 
Sbjct: 21  IF--LSGCNF-----------RCSYC----HNLENILKIKHSI-TVKEFLKRVDPLLTEA 62

Query: 85  GRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPK 136
               V++GGEP LQ + + L +     G+ + ++TNGT         + +D+I +  K
Sbjct: 63  ---IVISGGEPTLQEEIIELAREAKDLGYLVKLDTNGTRPEIVSKILEYLDYIAIDVK 117


>gi|299069358|emb|CBJ40624.1| putative ribonucleotide reductase activating transmembrane protein
           (nrdG) [Ralstonia solanacearum CMR15]
          Length = 241

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 28/128 (21%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G++A  VF   +GC             +C +C    +  +  +G  ++  ++ D +  + 
Sbjct: 39  GQLAAVVFI--AGCP-----------WRCHYCHNPHLQ-ERARGPDWS--EVLDFLGRRR 82

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
              +      V +GGEPL +  +P LI A    GF I + T G            +DW+ 
Sbjct: 83  NLLDA----VVFSGGEPLSEPRLPQLIDAARALGFRIGLHTGGIYPARFAEVLPRLDWVG 138

Query: 133 VSPKAGCD 140
           +  K    
Sbjct: 139 LDIKTTAP 146


>gi|257064523|ref|YP_003144195.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Slackia heliotrinireducens DSM 20476]
 gi|256792176|gb|ACV22846.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Slackia heliotrinireducens DSM 20476]
          Length = 231

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 19/98 (19%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            VF    GC+            +C FC  +F  + G        ++    ++++    + 
Sbjct: 21  TVF--LGGCDF-----------RCPFC-HNFELVVGPLPVAMEDEEFFAFLDKRHGLLDG 66

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
                 +TGGEP L+ D+P  I+ +   GF + ++TNG
Sbjct: 67  ----VAITGGEPCLRRDLPEFIKKIRDAGFPVKLDTNG 100


>gi|256827642|ref|YP_003151601.1| putative Fe-S oxidoreductase [Cryptobacterium curtum DSM 15641]
 gi|256583785|gb|ACU94919.1| predicted Fe-S oxidoreductase [Cryptobacterium curtum DSM 15641]
          Length = 422

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 18/96 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C      +         + + D+   +I++            + +
Sbjct: 50  CNLKC--------EHC------YALSDAQHYDQLSTDEAKAMIDDL---AAFGAPVLLFS 92

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           GGEP ++ D+  L+Q     G  + + TNGT+  P+
Sbjct: 93  GGEPCVRPDLLELMQYAKAAGMRVVISTNGTLITPE 128


>gi|218233688|ref|YP_002365291.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus B4264]
 gi|228956924|ref|ZP_04118705.1| hypothetical protein bthur0005_4620 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229143233|ref|ZP_04271665.1| hypothetical protein bcere0012_4060 [Bacillus cereus BDRD-ST24]
 gi|229148845|ref|ZP_04277093.1| hypothetical protein bcere0011_4160 [Bacillus cereus m1550]
 gi|296501273|ref|YP_003662973.1| pyruvate formate-lyase activating enzyme [Bacillus thuringiensis
           BMB171]
 gi|218161645|gb|ACK61637.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus B4264]
 gi|228634639|gb|EEK91220.1| hypothetical protein bcere0011_4160 [Bacillus cereus m1550]
 gi|228640314|gb|EEK96712.1| hypothetical protein bcere0012_4060 [Bacillus cereus BDRD-ST24]
 gi|228802767|gb|EEM49603.1| hypothetical protein bthur0005_4620 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296322325|gb|ADH05253.1| pyruvate formate-lyase activating enzyme [Bacillus thuringiensis
           BMB171]
          Length = 243

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +     G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKAAGIHTTIDSSG 107


>gi|24374440|ref|NP_718483.1| pyruvate formate lyase-activating enzyme 1 [Shewanella oneidensis
           MR-1]
 gi|24349016|gb|AAN55927.1|AE015730_4 pyruvate formate-lyase 1 activating enzyme [Shewanella oneidensis
           MR-1]
          Length = 246

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 60/195 (30%), Gaps = 44/195 (22%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F T+ G G          RF     GC             +C++C   DT       
Sbjct: 10  VESFGTVDGPG---------IRFIAFMQGC-----------LMRCQYCHNRDT----WDL 45

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117
             G    VD+L   I       +        +GGE +LQ +    L +A  K G    ++
Sbjct: 46  DGGKEVQVDELMSQIISYRPFLDASNGGVTASGGEAILQAEFVAELFKACKKEGIHTCLD 105

Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177
           TNG +     +           D  +     + L   Q+N      +       +LQ  +
Sbjct: 106 TNGFVRKYTPV----------IDELLDHTDLVLLDIKQMNDDKHIELTKVSNHRTLQFAE 155

Query: 178 GPFLEENTNLAISYC 192
               + N    I Y 
Sbjct: 156 Y-LAKRNQPTWIRYV 169


>gi|329945642|ref|ZP_08293375.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328528645|gb|EGF55610.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 291

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 62/184 (33%), Gaps = 33/184 (17%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   +GC L           +C +C   DT F+   G         +L   +    
Sbjct: 70  RMTVF--LNGCPL-----------RCLYCHNPDT-FLMKDGEP---VEASELLRRMRRYR 112

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130
                      L+GGE L+Q      L+    K G    ++T+G      + E    ID 
Sbjct: 113 GVFRASKGGITLSGGEVLMQPAFAGRLLSGAKKMGIHTCIDTSGFLGANASDEMLDNIDL 172

Query: 131 ICVSPKAGCDLKIKG--GQELKLVFPQVNVSPENYIGFDFERFSLQP--MDGPFLEENTN 186
           + +  K+G +   K   G+ L       +      I   + RF L P   D P    N  
Sbjct: 173 VLLDVKSGDEETYKRVTGRSLAPTITFGDRLAAKGIEI-WARFVLVPDLTDDPENVHNVA 231

Query: 187 LAIS 190
             I 
Sbjct: 232 RIIE 235


>gi|325068902|ref|ZP_08127575.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces oris K20]
          Length = 291

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 63/184 (34%), Gaps = 33/184 (17%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   +GC L           +C++C   DT F+   G         +L   +    
Sbjct: 70  RMTVF--LNGCPL-----------RCQYCHNPDT-FLMKDGEP---VEASELLRRMRRYR 112

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130
                      L+GGE L+Q      L+    K G    ++T+G      + E    ID 
Sbjct: 113 GVFRASKGGITLSGGEVLMQPAFAGKLLAGAKKMGIHTCIDTSGFLGANASDEMLDNIDL 172

Query: 131 ICVSPKAGCDLKIKG--GQELKLVFPQVNVSPENYIGFDFERFSLQP--MDGPFLEENTN 186
           + +  K+G +   K   G+ L       +      I   + RF L P   D P    N  
Sbjct: 173 VLLDVKSGDEETYKKVTGRSLAPTITFGDRLAAKGIEI-WARFVLVPDLTDDPENVHNVA 231

Query: 187 LAIS 190
             I 
Sbjct: 232 RIIE 235


>gi|308270120|emb|CBX26732.1| hypothetical protein N47_A07610 [uncultured Desulfobacterium sp.]
          Length = 338

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 25/115 (21%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            + CNL            C  C   ++  +       +++ +   ++    + + +    
Sbjct: 21  LTKCNL-----------NCLHC---YINKEQHGKTTLSLETIKSWLDAF--SAKNKIANV 64

Query: 89  VLTGGEPLLQVDVPL-IQALNKRGFE-IAVETNG-------TIEPPQGIDWICVS 134
           V  GGEP L  D+PL ++     G++ I V+TNG       +   P  ID+I  S
Sbjct: 65  VFLGGEPTLHPDLPLAVKYAKNTGYKSITVDTNGYLFNRFLSKITPDEIDFISFS 119


>gi|326773240|ref|ZP_08232523.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces viscosus
           C505]
 gi|326636470|gb|EGE37373.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces viscosus
           C505]
          Length = 291

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 63/184 (34%), Gaps = 33/184 (17%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   +GC L           +C++C   DT F+   G         +L   +    
Sbjct: 70  RMTVF--LNGCPL-----------RCQYCHNPDT-FLMKDGEP---VEASELLRRMRRYR 112

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130
                      L+GGE L+Q      L+    K G    ++T+G      + E    ID 
Sbjct: 113 GVFRASKGGITLSGGEVLMQPAFAGRLLAGAKKMGIHTCIDTSGFLGANASDEMLDNIDL 172

Query: 131 ICVSPKAGCDLKIKG--GQELKLVFPQVNVSPENYIGFDFERFSLQP--MDGPFLEENTN 186
           + +  K+G +   K   G+ L       +      I   + RF L P   D P    N  
Sbjct: 173 VLLDVKSGDEETYKKVTGRSLAPTITFGDRLAAKGIEI-WARFVLVPDLTDDPENVHNVA 231

Query: 187 LAIS 190
             I 
Sbjct: 232 RIIE 235


>gi|171186113|ref|YP_001795032.1| radical SAM domain-containing protein [Thermoproteus neutrophilus
           V24Sta]
 gi|170935325|gb|ACB40586.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 254

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 54/145 (37%), Gaps = 22/145 (15%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL  G      +       T FV    T G     +++A+ +    I  E+      +
Sbjct: 46  GCNLRCGMCWAWRN-------TSFVL---TAGQWMPPEEVAERLR--KIARERGYEQVRI 93

Query: 91  TGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG-- 146
           +GGEPL+     L  I  L    +   VETNG +        +   P A   + IKG   
Sbjct: 94  SGGEPLIAPRHALAVIDELRD--YVFVVETNGILIDRALARELAARPNAVVRVSIKGATP 151

Query: 147 QELKLVFPQVNVSPENYIGFDFERF 171
           +E    F ++  SP  Y     E  
Sbjct: 152 EE----FEKITRSPRAYFHRQLEAI 172


>gi|167745967|ref|ZP_02418094.1| hypothetical protein ANACAC_00662 [Anaerostipes caccae DSM 14662]
 gi|167654482|gb|EDR98611.1| hypothetical protein ANACAC_00662 [Anaerostipes caccae DSM 14662]
          Length = 308

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 50/155 (32%), Gaps = 50/155 (32%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------QCRFC-------- 50
           F T  G+G       VF  F GC L     Q+               +C  C        
Sbjct: 16  FSTHDGDGIRT---TVF--FKGCPLSCVWCQNPEGISLRRRPLYFENRCIHCKICAAESV 70

Query: 51  --------DTDFVGIQGTKGGRYNVD--------------QLADLIEEQWITGEKEGRY- 87
                   DT F+ I   +   + ++               + +++EE            
Sbjct: 71  SGGMKCRGDTMFMNIDAPEDWEHLIELCPSGALAMDSREYSVKEVMEEIRKDTVFYRHDG 130

Query: 88  -CVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119
              L+GGEPL Q +  L  ++   K G   A+ET+
Sbjct: 131 GVTLSGGEPLHQSEFALEILKQCKKEGIHTAIETS 165


>gi|319935770|ref|ZP_08010199.1| pyruvate formate-lyase activating enzyme [Coprobacillus sp. 29_1]
 gi|319809205|gb|EFW05654.1| pyruvate formate-lyase activating enzyme [Coprobacillus sp. 29_1]
          Length = 254

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 36/123 (29%)

Query: 8   EIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F ++ G G          R      GC L           +C+FC   DT        
Sbjct: 12  ESFGSVDGPG---------VRYIYFLQGCPL-----------RCQFCHNPDT----WGSQ 47

Query: 61  KGGRYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117
           K      +  L   ++ +   GEK G    ++GGEPL+Q++  + L +   K      ++
Sbjct: 48  KYQEMTPEAALKQAMKYKSYWGEKGG--ITISGGEPLMQMEFILELFKLAKKENINTCID 105

Query: 118 TNG 120
           T+G
Sbjct: 106 TSG 108


>gi|228906251|ref|ZP_04070138.1| hypothetical protein bthur0013_4350 [Bacillus thuringiensis IBL
           200]
 gi|228853407|gb|EEM98177.1| hypothetical protein bthur0013_4350 [Bacillus thuringiensis IBL
           200]
          Length = 243

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSG 107


>gi|228937744|ref|ZP_04100377.1| hypothetical protein bthur0008_4220 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970623|ref|ZP_04131271.1| hypothetical protein bthur0003_4140 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977202|ref|ZP_04137601.1| hypothetical protein bthur0002_4190 [Bacillus thuringiensis Bt407]
 gi|228782511|gb|EEM30690.1| hypothetical protein bthur0002_4190 [Bacillus thuringiensis Bt407]
 gi|228789089|gb|EEM37020.1| hypothetical protein bthur0003_4140 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821896|gb|EEM67891.1| hypothetical protein bthur0008_4220 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938229|gb|AEA14125.1| pyruvate formate-lyase activating enzyme [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 243

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSG 107


>gi|206968116|ref|ZP_03229072.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus AH1134]
 gi|228950999|ref|ZP_04113120.1| hypothetical protein bthur0006_4300 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229068195|ref|ZP_04201502.1| hypothetical protein bcere0025_4110 [Bacillus cereus F65185]
 gi|229177033|ref|ZP_04304428.1| hypothetical protein bcere0005_4130 [Bacillus cereus 172560W]
 gi|229188712|ref|ZP_04315751.1| hypothetical protein bcere0002_4070 [Bacillus cereus ATCC 10876]
 gi|206737036|gb|EDZ54183.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus AH1134]
 gi|228594901|gb|EEK52681.1| hypothetical protein bcere0002_4070 [Bacillus cereus ATCC 10876]
 gi|228606508|gb|EEK63934.1| hypothetical protein bcere0005_4130 [Bacillus cereus 172560W]
 gi|228715009|gb|EEL66877.1| hypothetical protein bcere0025_4110 [Bacillus cereus F65185]
 gi|228808726|gb|EEM55224.1| hypothetical protein bthur0006_4300 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 243

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSG 107


>gi|228919371|ref|ZP_04082740.1| hypothetical protein bthur0011_3990 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840307|gb|EEM85579.1| hypothetical protein bthur0011_3990 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 243

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSG 107


>gi|83594329|ref|YP_428081.1| radical SAM family protein [Rhodospirillum rubrum ATCC 11170]
 gi|83577243|gb|ABC23794.1| Radical SAM [Rhodospirillum rubrum ATCC 11170]
          Length = 265

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 47/133 (35%), Gaps = 25/133 (18%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           G   VF   SGC             +C +C   DT     +   G   ++D+    +   
Sbjct: 41  GMRFVFF-LSGC-----------QFRCAYCHNPDT----WKLHNGRALDLDEAMAEV-SP 83

Query: 78  WITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKR-GFEIAVETNGTIEPPQGIDWICVS 134
           +    +      ++GGEPL+Q D    L+  L  + G   A++T G +       W    
Sbjct: 84  YAGFLRIAGGVTVSGGEPLMQADFTGALLARLKDQLGLHTALDTQGFLHAGVSDRWF--D 141

Query: 135 PKAGCDLKIKGGQ 147
           P     L IK   
Sbjct: 142 PVDLVLLDIKHSD 154


>gi|75760247|ref|ZP_00740301.1| Pyruvate formate-lyase activating enzyme [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218895566|ref|YP_002443977.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus G9842]
 gi|228899192|ref|ZP_04063462.1| hypothetical protein bthur0014_4190 [Bacillus thuringiensis IBL
           4222]
 gi|228963593|ref|ZP_04124746.1| hypothetical protein bthur0004_4720 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|74492273|gb|EAO55435.1| Pyruvate formate-lyase activating enzyme [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218541045|gb|ACK93439.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus G9842]
 gi|228796111|gb|EEM43566.1| hypothetical protein bthur0004_4720 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228860461|gb|EEN04851.1| hypothetical protein bthur0014_4190 [Bacillus thuringiensis IBL
           4222]
          Length = 243

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSG 107


>gi|229028300|ref|ZP_04184435.1| hypothetical protein bcere0028_4260 [Bacillus cereus AH1271]
 gi|228733024|gb|EEL83871.1| hypothetical protein bcere0028_4260 [Bacillus cereus AH1271]
          Length = 243

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSG 107


>gi|167624514|ref|YP_001674808.1| pyruvate formate lyase-activating enzyme 1 [Shewanella halifaxensis
           HAW-EB4]
 gi|167354536|gb|ABZ77149.1| pyruvate formate-lyase activating enzyme [Shewanella halifaxensis
           HAW-EB4]
          Length = 246

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 59/194 (30%), Gaps = 44/194 (22%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F T+ G G          RF     GC             +C +C   DT        
Sbjct: 11  ESFGTVDGPG---------IRFITFMQGC-----------LMRCLYCHNRDT----WDLH 46

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
            G    VD L   I       E  G     +GGE +LQ D    L +A  K G    ++T
Sbjct: 47  GGKEMKVDDLMSQIISYRPFLEASGGGVTASGGEAILQADFVAELFKACKKEGIHTCLDT 106

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
           NG +     I           D  +     + L   Q++ +    +       +LQ  + 
Sbjct: 107 NGFVRKHTPI----------IDELLDNTDLVLLDIKQIDDAKHIVLTNVSNHRTLQFAEY 156

Query: 179 PFLEENTNLAISYC 192
              +      I Y 
Sbjct: 157 -LHKRGQKTWIRYV 169


>gi|159041911|ref|YP_001541163.1| radical SAM domain-containing protein [Caldivirga maquilingensis
           IC-167]
 gi|157920746|gb|ABW02173.1| Radical SAM domain protein [Caldivirga maquilingensis IC-167]
          Length = 384

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            + S     R + +C  C   ++            ++  +L+E+     E +    + TG
Sbjct: 36  PVVSWNITRRCNLKCLHC---YISAGDADENELTTEEAMNLVEQF---SELKVPLILFTG 89

Query: 93  GEPLLQ-VDVPLIQALNKRGFEIAVETNGTI 122
           GEPL++   + L      +G  IA+ TNGT+
Sbjct: 90  GEPLMRGDLIKLAHYARDKGIRIALSTNGTL 120


>gi|189424840|ref|YP_001952017.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Geobacter lovleyi SZ]
 gi|189421099|gb|ACD95497.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Geobacter lovleyi SZ]
          Length = 193

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 30/140 (21%)

Query: 10  FLTLQGEGGHAGRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           F T+     + G++A  VFC   GC             +C +C    +   G  G     
Sbjct: 10  FTTID----YPGKLAAVVFC--QGCP-----------WRCSYCHNQHLLDAGQSG-TVTW 51

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-- 124
            ++   +E++    +      V +GGEP +Q  +P  +QA+ + GF   + T G      
Sbjct: 52  QEIIRFLEQRRSLLDA----VVFSGGEPTMQPTLPEALQAIRRMGFLTGLHTGGPYPQRL 107

Query: 125 ---PQGIDWICVSPKAGCDL 141
                 +DW+ +  KA   L
Sbjct: 108 AACLSQLDWVGMDLKAPFKL 127


>gi|309775961|ref|ZP_07670953.1| pyruvate-formate lyase-activating enzyme [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916243|gb|EFP61991.1| pyruvate-formate lyase-activating enzyme [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 378

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 18/101 (17%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F    GCN            +C FC    +            + +   +E++    + 
Sbjct: 169 TIF--TGGCNF-----------RCPFCQNSDLVFLPENMPELQEEDVLRFLEKRKGILDG 215

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
                 ++GGEPLL  ++   ++ +   G+ + ++TNG+  
Sbjct: 216 ----VCISGGEPLLNPELAGFLRKIKALGYAVKLDTNGSSP 252


>gi|307727418|ref|YP_003910631.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. CCGE1003]
 gi|307587943|gb|ADN61340.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. CCGE1003]
          Length = 411

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 17/112 (15%)

Query: 12  TLQGEGGHAGRVAVFCRFSGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGR-YNVDQ 69
           + QGE   AG            LW   E   R    C FC   +  +  T   R  + +Q
Sbjct: 10  SAQGEAAPAGVPP--------PLWLLAELTYRCPLHCAFC---YNPVDYTAHNRELSTEQ 58

Query: 70  LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
              ++ E    G  +  +   +GGEPL++ D+  L++     GF   + T+G
Sbjct: 59  WLRVLREARALGAAQLGF---SGGEPLMRDDLEVLVREARALGFYTNLITSG 107


>gi|229159596|ref|ZP_04287610.1| hypothetical protein bcere0009_4020 [Bacillus cereus R309803]
 gi|228623898|gb|EEK80710.1| hypothetical protein bcere0009_4020 [Bacillus cereus R309803]
          Length = 243

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSG 107


>gi|218780423|ref|YP_002431741.1| glycyl-radical enzyme activating protein family [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761807|gb|ACL04273.1| Pyruvate formate lyase activating enzyme [Desulfatibacillum
           alkenivorans AK-01]
          Length = 297

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
           GG ++ + L + I          G    L+GGEPLL  D  +  +      G  I +ET 
Sbjct: 100 GGDWDAESLLEEIAADRDFFLDSGGGVTLSGGEPLLHGDFLLEFLSLAKSEGIHINLETC 159

Query: 120 G 120
           G
Sbjct: 160 G 160


>gi|159904704|ref|YP_001548366.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanococcus maripaludis C6]
 gi|159886197|gb|ABX01134.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanococcus maripaludis C6]
          Length = 242

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 30/125 (24%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF   SGCN+  G   +  +               TK      +++ + ++  +      
Sbjct: 28  VF--LSGCNMKCGYCHNYETI-------------TTKISEMTAEEVFNGMDLMFAES--- 69

Query: 85  GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSP 135
               V++GGEP LQ +  + L +   ++ F + ++TNGT           + ID+I +  
Sbjct: 70  ---LVISGGEPTLQPEAVLELAKIAKEKEFPVKLDTNGTNPDLVEKLVLNKLIDYIAIDV 126

Query: 136 KAGCD 140
           KAG +
Sbjct: 127 KAGFE 131


>gi|322807528|emb|CBZ05103.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum
           H04402 065]
          Length = 232

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 23/101 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G   + D++   +       
Sbjct: 22  VF--FQGC-----------QLRCVYCHNPDT----WDFNAGIEISSDEVLKKVLRYKPY- 63

Query: 82  EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
            K+      +GGEPL+Q    + +++    +G   A++T+G
Sbjct: 64  FKQVGGITCSGGEPLMQPEFLLEILKKCKNQGIHTALDTSG 104


>gi|255324305|ref|ZP_05365426.1| pyruvate formate-lyase 1-activating enzyme [Corynebacterium
           tuberculostearicum SK141]
 gi|255298635|gb|EET77931.1| pyruvate formate-lyase 1-activating enzyme [Corynebacterium
           tuberculostearicum SK141]
          Length = 289

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 28/128 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ +F   SGC L           +C++C   DT     +   G    V+ +   I+   
Sbjct: 67  RMTMFM--SGCPL-----------RCQYCHNPDT----WEMKTGTLERVEDVVKRIKRYK 109

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTI------EPPQGIDW 130
                 G    ++GGEPL Q+     +++ ++  G    ++T G +      E    ID 
Sbjct: 110 PIFNASGGGLTISGGEPLFQLSFTRRVLKEVHDAGIHTTIDTAGYLGARLRDEDLDNIDL 169

Query: 131 ICVSPKAG 138
           + +  K+G
Sbjct: 170 VLLDVKSG 177


>gi|311741220|ref|ZP_07715044.1| pyruvate formate-lyase activating enzyme [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303390|gb|EFQ79469.1| pyruvate formate-lyase activating enzyme [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 289

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 28/128 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ +F   SGC L           +C++C   DT     +   G    V+ +   I+   
Sbjct: 67  RMTMFM--SGCPL-----------RCQYCHNPDT----WEMKTGTLERVEDVVKRIKRYK 109

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTI------EPPQGIDW 130
                 G    ++GGEPL Q+     +++ ++  G    ++T G +      E    ID 
Sbjct: 110 PIFNASGGGLTISGGEPLFQLSFTRRVLKEVHDAGIHTTIDTAGYLGARLRDEDLDNIDL 169

Query: 131 ICVSPKAG 138
           + +  K+G
Sbjct: 170 VLLDVKSG 177


>gi|225387330|ref|ZP_03757094.1| hypothetical protein CLOSTASPAR_01083 [Clostridium asparagiforme
           DSM 15981]
 gi|225046579|gb|EEG56825.1| hypothetical protein CLOSTASPAR_01083 [Clostridium asparagiforme
           DSM 15981]
          Length = 232

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 19/99 (19%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
             VF    GCN            +C FC  +   + GT    Y   ++ D + ++    E
Sbjct: 20  ATVF--TGGCNF-----------RCPFC-HNSELLPGTVEAEYETGEVLDFLRKRKGILE 65

Query: 83  KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
                  +TGGEP LQ D+   I+++ + G  + ++TNG
Sbjct: 66  G----VCITGGEPTLQPDLEDFIRSVRELGLLVKLDTNG 100


>gi|170758246|ref|YP_001788534.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A3
           str. Loch Maree]
 gi|169405235|gb|ACA53646.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A3
           str. Loch Maree]
          Length = 232

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 23/101 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G   + D++   +       
Sbjct: 22  VF--FQGC-----------QLRCVYCHNPDT----WDFNAGIEISSDEVLKKVLRYKPY- 63

Query: 82  EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
            K+      +GGEPL+Q    + +++    +G   A++T+G
Sbjct: 64  FKQVGGITCSGGEPLMQPEFLLEILKKCKSQGIHTALDTSG 104


>gi|299136379|ref|ZP_07029563.1| molybdenum cofactor biosynthesis protein A [Acidobacterium sp.
           MP5ACTX8]
 gi|298602503|gb|EFI58657.1| molybdenum cofactor biosynthesis protein A [Acidobacterium sp.
           MP5ACTX8]
          Length = 349

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 21/109 (19%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QV 99
           DR + +C +C T      G +G +Y+   +AD      +          LTGGEPLL Q 
Sbjct: 38  DRCNYRCVYCRT------GEEGAQYSELPIADYARILRVFVSLGIEKIRLTGGEPLLRQG 91

Query: 100 DVPLIQ-------ALNKRGFEIAVETNGTIEPP-------QGIDWICVS 134
            + LI+       A +    +IA+ TNG +  P        G+  I VS
Sbjct: 92  LLDLIRETAQLRPAFSDAPLDIALTTNGHLLAPLARPLREAGLSRITVS 140


>gi|266619565|ref|ZP_06112500.1| pyruvate formate-lyase 1-activating enzyme [Clostridium hathewayi
           DSM 13479]
 gi|288868850|gb|EFD01149.1| pyruvate formate-lyase 1-activating enzyme [Clostridium hathewayi
           DSM 13479]
          Length = 256

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 27/118 (22%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
           E F T+ G G       VF    GC +           +C++C   DT         G  
Sbjct: 10  ESFGTVDGPGIRM---VVF--TKGCPM-----------RCQYCHNPDT----WSLHGGTA 49

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
             V ++ D  E         G    +TGGEPLLQ++    L +   +R     ++T+G
Sbjct: 50  MTVSEILDQYEASRP--FYRGGGITVTGGEPLLQMEFVTELFEEACRRDIHTCLDTSG 105


>gi|323496041|ref|ZP_08101104.1| pyruvate formate lyase-activating enzyme 1 [Vibrio sinaloensis DSM
           21326]
 gi|323318932|gb|EGA71880.1| pyruvate formate lyase-activating enzyme 1 [Vibrio sinaloensis DSM
           21326]
          Length = 246

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 53/163 (32%), Gaps = 30/163 (18%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G    V+++ +  +    
Sbjct: 21  IRFIVFMQGC-----------LMRCQYCHNRDT----WDTHGGKEVTVEEIINDAKSYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQG-IDWICVSPK 136
                G     +GGE +LQ +      +A    G    ++TNG I      ID +     
Sbjct: 66  FMNASGGGVTCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYIRKHTDVIDEVL---- 121

Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
              DL +   + +K       +   N    DF R  LQ +   
Sbjct: 122 EATDLVMLDLKHMKDEIHHDFIGVSNKRTLDFAR-YLQKLGQK 163


>gi|315608967|ref|ZP_07883939.1| pyruvate formate-lyase activating enzyme [Prevotella buccae ATCC
           33574]
 gi|315249347|gb|EFU29364.1| pyruvate formate-lyase activating enzyme [Prevotella buccae ATCC
           33574]
          Length = 249

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 34/121 (28%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F ++ G G          RF     GC +           +C+FC   D+   G+   
Sbjct: 16  ETFGSVDGPG---------IRFLIFLQGCPM-----------RCQFCHNPDSWQTGV--- 52

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
            G +   D+L D   E + +         ++GGE L+Q+D    L +  ++RG    ++T
Sbjct: 53  -GEKMTADELLDR-AEHYRSYWGREGGITVSGGEALMQIDFLTELFRKAHERGINTCLDT 110

Query: 119 N 119
           +
Sbjct: 111 S 111


>gi|73668980|ref|YP_304995.1| heme biosynthesis protein [Methanosarcina barkeri str. Fusaro]
 gi|72396142|gb|AAZ70415.1| heme biosynthesis protein [Methanosarcina barkeri str. Fusaro]
          Length = 349

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 17/99 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            +GCNL            CR              G    D+    I+E    G+      
Sbjct: 16  TAGCNLNC--------VHCRG-----ASTSSVPAGELTTDEAKHFIDEVASIGK---PIL 59

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           +L+GGEPL + DV  + +     G  + + TNGT+  P+
Sbjct: 60  ILSGGEPLTRPDVFEIARYGTDAGLRVVLATNGTLLTPE 98


>gi|302534965|ref|ZP_07287307.1| pyruvate formate-lyase 1-activating enzyme [Streptomyces sp. C]
 gi|302443860|gb|EFL15676.1| pyruvate formate-lyase 1-activating enzyme [Streptomyces sp. C]
          Length = 289

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 21/98 (21%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
            +GC L            C +C   DT  +      G R + D +     +        G
Sbjct: 72  LAGCPLT-----------CLYCHNPDTMRMR----NGRRTSADAVIAEARKYTRFISASG 116

Query: 86  RYCVLTGGEPLLQVDV--PLIQALN-KRGFEIAVETNG 120
               L+GGEPLLQ      L+  L    G   A++T+G
Sbjct: 117 GGATLSGGEPLLQPVFAGELLHRLKSDLGLHTALDTSG 154


>gi|289423463|ref|ZP_06425265.1| pyruvate formate-lyase 1-activating enzyme [Peptostreptococcus
           anaerobius 653-L]
 gi|289156097|gb|EFD04760.1| pyruvate formate-lyase 1-activating enzyme [Peptostreptococcus
           anaerobius 653-L]
          Length = 243

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 49/137 (35%), Gaps = 35/137 (25%)

Query: 1   MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---D 51
           M    I   E F T+ G G          RF     GC L           +CRFC   D
Sbjct: 1   MTKGRIHSYETFGTVDGPG---------IRFVLFTQGCPL-----------RCRFCHNRD 40

Query: 52  TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNK 109
           T     +   G     D++ D   +     E  G    ++GGE  LQ D    + +   K
Sbjct: 41  T----WETGIGTEMTPDEVIDEYMKYKTYYETSGGGITVSGGEASLQADFVTEVFRLAKK 96

Query: 110 RGFEIAVETNGTIEPPQ 126
            G    ++T+G +E  +
Sbjct: 97  NGVHTCLDTSGFVEIDK 113


>gi|288870623|ref|ZP_06114741.2| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium hathewayi DSM 13479]
 gi|288866496|gb|EFC98794.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium hathewayi DSM 13479]
          Length = 260

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 28/125 (22%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
             +F    GCN            +C FC ++  +G    +      D L   ++ +    
Sbjct: 49  ATIF--LGGCNF-----------RCPFCHNSGLLGNDAEEA--MTEDSLFTFLKRRTSVL 93

Query: 82  EKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG-------IDWICV 133
           E       +TGGEP L  D+   I+ + + G+ I ++TNG              +D+I +
Sbjct: 94  EG----VCITGGEPTLSDDLEEFIRRIRQMGYLIKLDTNGYRPAVLKDLAGKGLLDYIAM 149

Query: 134 SPKAG 138
             KAG
Sbjct: 150 DIKAG 154


>gi|325969859|ref|YP_004246050.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Spirochaeta sp. Buddy]
 gi|324025097|gb|ADY11856.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Spirochaeta sp. Buddy]
          Length = 234

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 27/124 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
            FC   GCN       +R   + + C TD+                    +      +  
Sbjct: 22  FFC--QGCNYDCFYCHNRALIEPKSCITDY-----------------QEAQTFLQQRKGF 62

Query: 85  GRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEPP-------QGIDWICVSPK 136
            +  V++GGEP L    +  ++ +   GF + ++TNG+             + ++ V  K
Sbjct: 63  IQAVVISGGEPSLQHDLMEFVEFIRNLGFAVKLDTNGSRPQVVSKLLEHDLLSYVAVDVK 122

Query: 137 AGCD 140
           A C+
Sbjct: 123 APCE 126


>gi|117626444|ref|YP_859767.1| putative pyruvate-formate lyase-activating enzyme [Escherichia coli
           APEC O1]
 gi|115515568|gb|ABJ03643.1| putative pyruvate-formate lyase-activating enzyme [Escherichia coli
           APEC O1]
          Length = 305

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           KG R +V  +   +E++     + G    L+GGEPL Q +    L++A   +G+  A+ET
Sbjct: 107 KGKRMSVTAVMRELEKEENLYRRSGGGITLSGGEPLAQPEFARELLKASKAKGWHTAIET 166

Query: 119 NG 120
           +G
Sbjct: 167 SG 168


>gi|158319189|ref|YP_001511696.1| radical SAM domain-containing protein [Alkaliphilus oremlandii
           OhILAs]
 gi|158139388|gb|ABW17700.1| Radical SAM domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 292

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C FC +T              ++    ++EE     +    +   
Sbjct: 15  CNL-----------ACSFCPETKRA------AEFMKIESFHKILEEIKPFADYIYFHVK- 56

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             GEPLL   +   +   +++GF++ + TNGT+
Sbjct: 57  --GEPLLHPAIDQFLDLSHEKGFQVNITTNGTL 87


>gi|134100858|ref|YP_001106519.1| radical SAM family protein [Saccharopolyspora erythraea NRRL 2338]
 gi|291003527|ref|ZP_06561500.1| radical SAM family protein [Saccharopolyspora erythraea NRRL 2338]
 gi|133913481|emb|CAM03594.1| radical SAM [Saccharopolyspora erythraea NRRL 2338]
          Length = 341

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 20/117 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C           G    R  V+Q    +EE             + 
Sbjct: 38  CNLAC--------AGCG----KIQHPAGVLKQRMPVEQALAAVEECG------APVVSIA 79

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
           GGEPL+  ++  L+  L +R   + + TN  +  P+ ID +  SP     + I G +
Sbjct: 80  GGEPLMHPEIDVLVAELVRRKKFVYLCTN-ALLMPRKIDKLRPSPYFSWAVHIDGLE 135


>gi|297569532|ref|YP_003690876.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925447|gb|ADH86257.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 203

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 55/161 (34%), Gaps = 36/161 (22%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG--RYNVDQLADLIEE 76
           GRVA  +F    GCN            +C +C    +       G   Y  +++   +  
Sbjct: 16  GRVAAVIF--TQGCNF-----------RCPWCHNAELIPAAAPAGADLYAPEEILARLAA 62

Query: 77  QWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP 135
           +           V++GGEP LQ D +   + + K G  + V++NG+              
Sbjct: 63  RRNKLGGA----VISGGEPTLQPDLLDFCREIKKLGLAVKVDSNGSRPEILA-------- 110

Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
                 K+   + +  +   +   P  Y      +  L+ +
Sbjct: 111 ------KLLAAKVVDFLAMDIKAPPAKYEQLVSTKVDLEAI 145


>gi|261207618|ref|ZP_05922303.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           TC 6]
 gi|289565130|ref|ZP_06445583.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           D344SRF]
 gi|294614807|ref|ZP_06694702.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1636]
 gi|294617486|ref|ZP_06697117.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1679]
 gi|260078001|gb|EEW65707.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           TC 6]
 gi|289163137|gb|EFD10984.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           D344SRF]
 gi|291592269|gb|EFF23883.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1636]
 gi|291596226|gb|EFF27488.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1679]
          Length = 253

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 28/119 (23%)

Query: 8   EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F ++ G G        VF    GC             +C+FC   DT  +G     G 
Sbjct: 13  ETFGSVDGPGLRFV----VFM--QGC-----------RMRCQFCHNPDTWNIG----GGK 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
            Y  D+L D  E        +G    ++GGEPLLQ+D  + L +   +R     ++T G
Sbjct: 52  EYTADELLDKAERFRPYWGNKGG-ITVSGGEPLLQIDFLIELFKKAKERKMHTTLDTCG 109


>gi|312623314|ref|YP_004024927.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203781|gb|ADQ47108.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 231

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 28/152 (18%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           F GCN             C FC   +        G++  D +     E     +      
Sbjct: 23  FGGCNF-----------SCPFC---YNSELVNFKGKFMDDSI---FFEYLDKRKGIVDAV 65

Query: 89  VLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGC 139
            +TGGEP L        I+ + ++   + ++TNG+             +D++ +  KA  
Sbjct: 66  CITGGEPTLNEEYLTEFIKKIKQKNLLVKLDTNGSKPEVLQRLLDAGLLDYVAMDVKAPL 125

Query: 140 D--LKIKGGQELKLVFPQVNVSPENYIGFDFE 169
           +   +I G  ++  +   + +   + I ++F 
Sbjct: 126 EKYPQITGFSDVDKIIRSIEILKNSNIDYEFR 157


>gi|283856503|ref|YP_163304.2| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|283775507|gb|AAV90193.2| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 263

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 30/133 (22%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
            RF    +GC           + +C++C                   LA+++EE     +
Sbjct: 41  VRFVLFLAGC-----------ALRCQYC----HNPDSWFLKNGRAVTLAEMMEEVASYAD 85

Query: 83  KEGRY---CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI------EPPQGIDWI 131
              R      ++GGEPL+Q +    L++A    G   A++T G +            D +
Sbjct: 86  FLKRAGGGITISGGEPLVQPEFTGALLKAAKYLGLHTAIDTAGFLGAQADDALLSNTDLV 145

Query: 132 CVSPKAGCDLKIK 144
            +  KA  D + K
Sbjct: 146 LLDIKAFNDKRYK 158


>gi|260753867|ref|YP_003226760.1| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258553230|gb|ACV76176.1| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 270

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 30/133 (22%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
            RF    +GC           + +C++C                   LA+++EE     +
Sbjct: 48  VRFVLFLAGC-----------ALRCQYC----HNPDSWFLKNGRAVTLAEMMEEVASYAD 92

Query: 83  KEGRY---CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI------EPPQGIDWI 131
              R      ++GGEPL+Q +    L++A    G   A++T G +            D +
Sbjct: 93  FLKRAGGGITISGGEPLVQPEFTGALLKAAKYLGLHTAIDTAGFLGAQADDALLSNTDLV 152

Query: 132 CVSPKAGCDLKIK 144
            +  KA  D + K
Sbjct: 153 LLDIKAFNDKRYK 165


>gi|182701939|ref|ZP_02618322.2| radical SAM domain protein [Clostridium botulinum Bf]
 gi|237797038|ref|YP_002864590.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657]
 gi|182673213|gb|EDT85174.1| radical SAM domain protein [Clostridium botulinum Bf]
 gi|229263329|gb|ACQ54362.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 278

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 63/175 (36%), Gaps = 38/175 (21%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDT--------------DF 54
           F ++ G G      A+F  F GCN       +  +   C+ C T              D 
Sbjct: 12  FSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDS 66

Query: 55  VGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           V     K               G R     + ++I+E   T         ++GGE  LQ 
Sbjct: 67  VKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKEILKTKPFISG-ITVSGGECTLQK 125

Query: 100 D--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
           D  + L + +   G  I ++TNG+++  +      +   A  D+K    +E K++
Sbjct: 126 DFLIDLFEKIKLLGLTIFIDTNGSLDFSKNPKLTELMDMAMIDVKSFDNEEHKML 180


>gi|241762442|ref|ZP_04760520.1| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373036|gb|EER62694.1| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 270

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 30/133 (22%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
            RF    +GC           + +C++C                   LA+++EE     +
Sbjct: 48  VRFVLFLAGC-----------ALRCQYC----HNPDSWFLKNGRAVTLAEMMEEVASYAD 92

Query: 83  KEGRY---CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI------EPPQGIDWI 131
              R      ++GGEPL+Q +    L++A    G   A++T G +            D +
Sbjct: 93  FLKRAGGGITISGGEPLVQPEFTGALLKAAKYLGLHTAIDTAGFLGAQADDALLSNTDLV 152

Query: 132 CVSPKAGCDLKIK 144
            +  KA  D + K
Sbjct: 153 LLDIKAFNDKRYK 165


>gi|313669389|ref|YP_004049816.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Sulfuricurvum kujiense DSM 16994]
 gi|313156586|gb|ADR35263.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Sulfuricurvum kujiense DSM 16994]
          Length = 227

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 32/141 (22%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
            A+F  F+GCNL           +C +C   +        GR +V+Q   ++ ++    E
Sbjct: 26  AAIFW-FAGCNL-----------RCLYC---YNPDIVLGEGRISVEQALSILVKRVGFLE 70

Query: 83  KEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPP-------QGIDWICVS 134
                 VL+GGE  L    +P   ++   G++I ++TNG              +D++ + 
Sbjct: 71  G----VVLSGGECTLYSDLIPFCHSIKNMGYKIKIDTNGMRPDVIRQLLEANLLDYVALD 126

Query: 135 PKAGCDLKIK----GGQELKL 151
            KA  D K+K    GG E + 
Sbjct: 127 YKAP-DSKMKDICGGGSEKRF 146


>gi|268678692|ref|YP_003303123.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268616723|gb|ACZ11088.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 231

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 37/154 (24%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           F+ CN+            C +C   +        G  ++    + +E +    E      
Sbjct: 32  FAKCNM-----------ACPYC---YNPQIVRGKGEISLASALEFLESRKDRLEG----V 73

Query: 89  VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGCD 140
           VL+GGE  L   +    +A+ + G++I ++TNGT             +D+I +  KA   
Sbjct: 74  VLSGGECTLYPHLESFCEAIKRLGYKIKIDTNGTNPALLKRLIERTLVDYIALDYKAP-- 131

Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
                    K  + ++   P   +  +   + +Q
Sbjct: 132 ---------KKHYTRITHHPHFEVFEESLHYLIQ 156


>gi|146296194|ref|YP_001179965.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409770|gb|ABP66774.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 231

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 28/152 (18%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           F GCN             C FC   +        G +  D +     E     +      
Sbjct: 23  FGGCNF-----------SCPFC---YNSQLVNFKGNFMDDSI---FFEYLDKRKGIVDAV 65

Query: 89  VLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGC 139
            +TGGEP L        I+ + +R   + ++TNG+             +D++ +  KA  
Sbjct: 66  CITGGEPTLNEEYLTEFIKKIKQRDLLVKLDTNGSRPEVLQRLLDAGLLDYVAMDVKAPL 125

Query: 140 D--LKIKGGQELKLVFPQVNVSPENYIGFDFE 169
           +   +I G  E+  +   + +   + I ++F 
Sbjct: 126 EKYPQITGFSEVDKIRRSIEILKNSNIDYEFR 157


>gi|126649567|ref|ZP_01721808.1| hypothetical protein BB14905_06503 [Bacillus sp. B14905]
 gi|126593892|gb|EAZ87815.1| hypothetical protein BB14905_06503 [Bacillus sp. B14905]
          Length = 291

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C FC  T+         G   V+Q   +++E     +    +   
Sbjct: 15  CNL-----------ACSFCPPTERA------KGLIKVEQFNKILDEIRPHTKYIYLHVK- 56

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             GEPLL   +  L+ A + +GF++ + TNGT+
Sbjct: 57  --GEPLLHPRIDQLLDAAHAKGFKVNITTNGTL 87


>gi|296136124|ref|YP_003643366.1| molybdenum cofactor biosynthesis protein A [Thiomonas intermedia
           K12]
 gi|295796246|gb|ADG31036.1| molybdenum cofactor biosynthesis protein A [Thiomonas intermedia
           K12]
          Length = 378

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 15/131 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C    +  +  +   + ++    ++     +      R   LTGGEPLL+ 
Sbjct: 48  DRCNFRCTYCMPKEIFDKHYEFLSHADLLSFEEITRAAQVFMALGVRKIRLTGGEPLLRK 107

Query: 100 DVP-LIQALNK----RGF--EIAVETNGTIEP-------PQGIDWICVSPKAGCDLKIKG 145
           ++  L++ L+      G   E+ + TNG+I           G+D + VS  A  D   + 
Sbjct: 108 NLERLVEMLHSLRTPEGLAPELTLTTNGSILARKATLLKEAGLDRVTVSLDALDDAAFRQ 167

Query: 146 GQELKLVFPQV 156
             ++     +V
Sbjct: 168 MNDVDFPVAEV 178


>gi|148381517|ref|YP_001256058.1| radical SAM domain protein [Clostridium botulinum A str. ATCC 3502]
 gi|148291001|emb|CAL85138.1| putative dehydratase/lyase activating enzyme [Clostridium botulinum
           A str. ATCC 3502]
          Length = 279

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 62/175 (35%), Gaps = 38/175 (21%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDT--------------DF 54
           F ++ G G      A+F  F GCN       +  +   C+ C T              D 
Sbjct: 13  FSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDS 67

Query: 55  VGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           V     K               G R     + ++I+E   T         ++GGE  LQ 
Sbjct: 68  VKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKEILKTKPFISG-ITVSGGECTLQR 126

Query: 100 D--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
           D  + L + +   G  I V+TNG+++  +      +   A  D+K     E K++
Sbjct: 127 DFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMLDVKSFDSDEHKML 181


>gi|153932810|ref|YP_001385892.1| radical SAM domain-containing protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153937401|ref|YP_001389299.1| radical SAM domain-containing protein [Clostridium botulinum A str.
           Hall]
 gi|152928854|gb|ABS34354.1| radical SAM domain protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152933315|gb|ABS38814.1| radical SAM domain protein [Clostridium botulinum A str. Hall]
          Length = 278

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 62/175 (35%), Gaps = 38/175 (21%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDT--------------DF 54
           F ++ G G      A+F  F GCN       +  +   C+ C T              D 
Sbjct: 12  FSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDS 66

Query: 55  VGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           V     K               G R     + ++I+E   T         ++GGE  LQ 
Sbjct: 67  VKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKEILKTKPFISG-ITVSGGECTLQR 125

Query: 100 D--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
           D  + L + +   G  I V+TNG+++  +      +   A  D+K     E K++
Sbjct: 126 DFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMLDVKSFDSDEHKML 180


>gi|253582696|ref|ZP_04859917.1| pyruvate-formate lyase-activating enzyme [Fusobacterium varium ATCC
           27725]
 gi|251835566|gb|EES64106.1| pyruvate-formate lyase-activating enzyme [Fusobacterium varium ATCC
           27725]
          Length = 243

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 36/192 (18%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           E F T+ G G          RF     GC L           +C+FC          +  
Sbjct: 11  ESFGTVDGPG---------IRFVLFLQGCPL-----------RCKFCHNPDTWNISDEKI 50

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
           R    +  + ++ ++     +     +TGGEP LQ D  + L +   + G    V+T+G 
Sbjct: 51  RERAVETFEKVK-KYKGYFGKKGGLTVTGGEPFLQADFILELFKLCKEDGINTVVDTSGY 109

Query: 122 I------EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
           I      E  +  D + +  KA  +   K   EL  V  +  +    Y+    +R  ++ 
Sbjct: 110 IFNEKVKEVLEYTDLVLLDIKAIDEKVYK---ELTGVELENTLKFAQYLKEKGKRVWIRH 166

Query: 176 MDGPFLEENTNL 187
           +  P + +N  L
Sbjct: 167 VIVPGITDNDEL 178


>gi|86607742|ref|YP_476504.1| pyruvate formate-lyase activating enzyme [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556284|gb|ABD01241.1| pyruvate formate-lyase activating enzyme [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 249

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 39/120 (32%), Gaps = 32/120 (26%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C +C   D          G    V+ L   I+    
Sbjct: 29  IRFVIFTQGCPL-----------RCLYCHNPD----CRDPQAGQLVTVESLIAEIQRYKN 73

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWI 131
                G     TGGEPL+Q      + +  ++ G   A++T+G           +  D +
Sbjct: 74  YLRGGG--VTATGGEPLMQPTFVAEIFRRCHELGLHTALDTSGYGQLEAAKPVLEHTDLV 131


>gi|302866329|ref|YP_003834966.1| radical SAM domain-containing protein [Micromonospora aurantiaca
           ATCC 27029]
 gi|302569188|gb|ADL45390.1| Radical SAM domain protein [Micromonospora aurantiaca ATCC 27029]
          Length = 303

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 19/93 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            + CNL           +C FC     G         +  +  DL+      G       
Sbjct: 28  TARCNL-----------RCTFC----WGPDHDIRDGLDTAEWKDLLSRFRAGGTSA---V 69

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           V TGGEPLL+ D+  L++  ++ GF + + TNG
Sbjct: 70  VFTGGEPLLRRDIGGLLRHASEEGFRVTLSTNG 102


>gi|303290949|ref|XP_003064761.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453787|gb|EEH51095.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 278

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 40/126 (31%), Gaps = 35/126 (27%)

Query: 21  GRVA-VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEE 76
           G  A VF    GC             +C FC   D+         G      Q+   I+ 
Sbjct: 39  GIRAIVF--LQGC-----------EKRCVFCCNPDS----WSARSGASMTAKQVFTRIQR 81

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDV---------PLIQALNKRGFEIAVET--NGTIEPP 125
                   G    L+GGEPLLQ             L   +  RG   A++T   GT    
Sbjct: 82  NARYYAASGGGITLSGGEPLLQARRRRRRPAFAAELCDLVRARGLTAAIDTAAGGT---S 138

Query: 126 QGIDWI 131
            G D +
Sbjct: 139 AGWDVV 144


>gi|116750344|ref|YP_847031.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699408|gb|ABK18596.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 324

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 63/164 (38%), Gaps = 31/164 (18%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R +A+C FCD                 +L D +E   +  +       LTGGEPLL+ D+
Sbjct: 36  RCNARCNFCD---------YWKEKPTGELGDYVE---VVRKLAPLSVSLTGGEPLLRADL 83

Query: 102 P-LIQALNKR-GF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNV 158
           P LI +L +  GF  I++ TNG++   +           G  L   G  E+ +    ++ 
Sbjct: 84  PELIASLRRSFGFLFISLITNGSLLTREN----------GVALWEAGLDEMSISLDYLDE 133

Query: 159 SPEN---YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199
             +      G      +L P  G       NL  +   +   +R
Sbjct: 134 RHDEGRGIHGLAGHILALAPRLGS---AGVNLCFNVVLKRGNYR 174


>gi|331680073|ref|ZP_08380735.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
           (Formate-C-acetyltransferase-activating enzyme 2)
           [Escherichia coli H591]
 gi|331072399|gb|EGI43732.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
           (Formate-C-acetyltransferase-activating enzyme 2)
           [Escherichia coli H591]
          Length = 315

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 66/177 (37%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 47  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 101

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 102 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 161

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +  + +  +   DLKI    +    +K+  P+V
Sbjct: 162 LQRLRLWGVSCAIETAGDAPASKLLPLVKLCDEVLFDLKIMDATQARDVVKMNLPRV 218


>gi|298530196|ref|ZP_07017598.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509570|gb|EFI33474.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 348

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 20/113 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C   +             +++   +++    G +  R  VL 
Sbjct: 37  CNL-----------RCIYC---YAESGAPLENELRFEEITAAVDQAVELGAR--RIIVLG 80

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWIC---VSPKAGCD 140
           GGEPL     +P++Q + KRG  I + TNGT+   +  +      VSP    +
Sbjct: 81  GGEPLAHPQILPVLQHIYKRGAAIDLFTNGTLITAETAEIFAELGVSPVIKMN 133


>gi|182414976|ref|YP_001820042.1| radical SAM domain-containing protein [Opitutus terrae PB90-1]
 gi|177842190|gb|ACB76442.1| Radical SAM domain protein [Opitutus terrae PB90-1]
          Length = 351

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A           I+  +G R +     D +           +  +L 
Sbjct: 17  CNLRCAMCGQWSPAG---------YIRSGRGRRGHPLTAEDWMRLADEAAAHGIKSILLR 67

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
           GGEP +   +  L++ L+  G  I+++TNGT
Sbjct: 68  GGEPFMLPGIQRLLEHLHDLGMFISIDTNGT 98


>gi|229077802|ref|ZP_04210429.1| hypothetical protein bcere0023_5030 [Bacillus cereus Rock4-2]
 gi|228705530|gb|EEL57889.1| hypothetical protein bcere0023_5030 [Bacillus cereus Rock4-2]
          Length = 243

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDLTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSG 107


>gi|302873840|ref|YP_003842473.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307689915|ref|ZP_07632361.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302576697|gb|ADL50709.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
          Length = 467

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 18/156 (11%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQ 105
           C +C         +     +     D I+      +      + +GGEPL+  D + L++
Sbjct: 146 CIYC------CNSSGSRIEDELSFNDWIKVIDEAADLGVETILFSGGEPLMYPDFIKLVK 199

Query: 106 ALNKRGFEIAVETNGTIEPPQ--------GIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
                G    V TNGT+   +        GID++ +S  A  +         K   P+V 
Sbjct: 200 RTKDNGIYPIVSTNGTLISEETAKQLSEAGIDFVHLSMSAANEELYDSIIGYKGNLPKVK 259

Query: 158 VSPENYIGFDFE---RFSLQPMDGPFLEENTNLAIS 190
            + +     +     +  L P++   +EE  +  I 
Sbjct: 260 AAIKALKDNNIYIRLKVVLMPVNIKHIEELLDFCIE 295


>gi|237751662|ref|ZP_04582142.1| predicted protein [Helicobacter bilis ATCC 43879]
 gi|229373028|gb|EEO23419.1| predicted protein [Helicobacter bilis ATCC 43879]
          Length = 437

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 8/85 (9%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104
           +C+ C   F+     +  + +++ +   + +  I          ++GGEPLL  ++  L+
Sbjct: 124 RCKHC---FINAGRVEKQQIDIENILAKVRDITIINGYTS--VTISGGEPLLHKNIFSLL 178

Query: 105 QALNKRGFEIAVETNGTIEPPQGID 129
           + L  RG ++++ TNG +     ID
Sbjct: 179 EGL--RGHKVSLFTNGILINESIID 201


>gi|167748466|ref|ZP_02420593.1| hypothetical protein ANACAC_03210 [Anaerostipes caccae DSM 14662]
 gi|167652458|gb|EDR96587.1| hypothetical protein ANACAC_03210 [Anaerostipes caccae DSM 14662]
          Length = 230

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 20/102 (19%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
            VF    GCN +           C FC + + +  +  + G    D LA L + + I   
Sbjct: 21  TVF--TGGCNFF-----------CPFCHNAELISPRKEEPGLLEKDLLAFLRKRRGILDG 67

Query: 83  KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
                  ++GGEPLL   +  LI+ + + G+ + ++TNG+  
Sbjct: 68  -----VCISGGEPLLHTGLSGLIREMKELGYLVKLDTNGSFP 104


>gi|257867820|ref|ZP_05647473.1| pyruvate formate-lyase activating enzyme [Enterococcus
           casseliflavus EC30]
 gi|257874148|ref|ZP_05653801.1| pyruvate formate-lyase activating enzyme [Enterococcus
           casseliflavus EC10]
 gi|257801903|gb|EEV30806.1| pyruvate formate-lyase activating enzyme [Enterococcus
           casseliflavus EC30]
 gi|257808312|gb|EEV37134.1| pyruvate formate-lyase activating enzyme [Enterococcus
           casseliflavus EC10]
          Length = 251

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 30/121 (24%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
            E F ++ G G          RF     GC             +C+FC        GT  
Sbjct: 10  TESFGSVDGPG---------IRFIVFMQGC-----------RMRCQFCHNPDTWKIGTGV 49

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETN 119
            R   D L + ++ +   G+K G    ++GGEPLLQ+D  LI         G    ++T 
Sbjct: 50  ERTTDDVLEEALKYREFWGQKGG--ITVSGGEPLLQMDF-LIDLFRKAKAEGVSTTLDTC 106

Query: 120 G 120
           G
Sbjct: 107 G 107


>gi|299145466|ref|ZP_07038534.1| putative pyruvate formate-lyase-activating enzyme [Bacteroides sp.
           3_1_23]
 gi|298515957|gb|EFI39838.1| putative pyruvate formate-lyase-activating enzyme [Bacteroides sp.
           3_1_23]
          Length = 205

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 21/112 (18%)

Query: 11  LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL 70
           LT+ GEG           F GC L           +C++C             RY+ +QL
Sbjct: 14  LTIDGEGVTTLVA-----FHGCPL-----------RCKYCLNPTSLQPDGVWERYDCNQL 57

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI---QALNKRGFEIAVETN 119
            + + +  +            GGEPLLQ     I   + L    + I VET+
Sbjct: 58  YEEVRKDELYFLASCGGVTFGGGEPLLQN--EFIRQFRQLCGPEWRITVETS 107


>gi|226227077|ref|YP_002761183.1| molybdenum cofactor biosynthesis protein A [Gemmatimonas aurantiaca
           T-27]
 gi|226090268|dbj|BAH38713.1| molybdenum cofactor biosynthesis protein A [Gemmatimonas aurantiaca
           T-27]
          Length = 323

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 15/96 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQG----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
           DR + +C++C    + ++G     KG     +++AD++ +    G K  R   +TGGEP 
Sbjct: 18  DRCNFRCQYC----MPVEGLPWLPKGDILRYEEIADIVGQLAPMGLKRLR---ITGGEPT 70

Query: 97  LQVDVP-LIQALNK-RGFE-IAVETNGTIEPPQGID 129
           ++ ++P LI+ L    G E IA+ TNG ++ PQ  D
Sbjct: 71  IRPELPRLIRMLRDIPGIEDIALSTNG-VKLPQMSD 105


>gi|296127880|ref|YP_003635130.1| Radical SAM domain protein [Cellulomonas flavigena DSM 20109]
 gi|296019695|gb|ADG72931.1| Radical SAM domain protein [Cellulomonas flavigena DSM 20109]
          Length = 338

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 29/127 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C      +      + G  +   L   + E    G    R   ++
Sbjct: 21  CNLTC--------AHC------YSSSSPHERGGTDPAALERALPELAAEGY---RVVSVS 63

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKI 143
           GGEP L   +  + +A +  G  + + TNGT       ++ P  +D + VS     D   
Sbjct: 64  GGEPFLYPHLQRVARAAHAAGMRVNLVTNGTVRVPSWVLDDPASLDVVAVS----LDGTA 119

Query: 144 KGGQELK 150
               EL+
Sbjct: 120 SRHDELR 126


>gi|182417544|ref|ZP_02948871.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum
           5521]
 gi|237665689|ref|ZP_04525677.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182378713|gb|EDT76240.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum
           5521]
 gi|237658636|gb|EEP56188.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 264

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 36/123 (29%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F ++ G G          RF     GC++           +C+FC   DT        
Sbjct: 24  ETFGSVDGPG---------VRFVTFLKGCHM-----------RCQFCHNPDT----WDIN 59

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR---GFEIAVE 117
            G     D+L            K+G    ++GGEPLLQ+D  LI+   K    G  + ++
Sbjct: 60  GGETRTADELLSQALRYKTY-WKKGGGITVSGGEPLLQIDF-LIEFFKKAKSKGVHVTLD 117

Query: 118 TNG 120
           T+G
Sbjct: 118 TSG 120


>gi|325570902|ref|ZP_08146551.1| pyruvate formate-lyase activating enzyme [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156306|gb|EGC68489.1| pyruvate formate-lyase activating enzyme [Enterococcus
           casseliflavus ATCC 12755]
          Length = 263

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 30/121 (24%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
            E F ++ G G          RF     GC             +C+FC        GT  
Sbjct: 22  TESFGSVDGPG---------IRFIVFMQGC-----------RMRCQFCHNPDTWKIGTGV 61

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETN 119
            R   D L + ++ +   G+K G    ++GGEPLLQ+D  LI         G    ++T 
Sbjct: 62  ERTTDDVLEEALKYREFWGQKGG--ITVSGGEPLLQMDF-LIDLFRKAKAEGVSTTLDTC 118

Query: 120 G 120
           G
Sbjct: 119 G 119


>gi|77920251|ref|YP_358066.1| Fe-S oxidoreductase coenzyme synthesis protein [Pelobacter
           carbinolicus DSM 2380]
 gi|77546334|gb|ABA89896.1| Fe-S oxidoreductase, putative coenzyme synthesis protein
           [Pelobacter carbinolicus DSM 2380]
          Length = 344

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VP 102
             +C +C   +            + ++  ++E+    G +  R  VL GGEPL+    V 
Sbjct: 36  DLRCLYC---YADSGTALADELALSEIYAVLEQAMALGIR--RVVVLGGGEPLMYPHVVE 90

Query: 103 LIQALNKRGFEIAVETNGT 121
           ++Q L + G  I + TNGT
Sbjct: 91  IMQYLAQHGIGIDLFTNGT 109


>gi|302036912|ref|YP_003797234.1| molybdenum cofactor biosynthesis protein A [Candidatus Nitrospira
           defluvii]
 gi|300604976|emb|CBK41309.1| Molybdenum cofactor biosynthesis protein A [Candidatus Nitrospira
           defluvii]
          Length = 354

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 22/127 (17%)

Query: 23  VAVFCRFSGCNLWSGREQ--DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
             +F R     L S R    DR + +C++C   D D+  +      R  +    ++ E  
Sbjct: 11  PTIFDRLGR-PLRSLRLSVTDRCNLRCKYCMPED-DYAWL-----PRDTILTFEEMAELT 63

Query: 78  WITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF--EIAVETNGTIEPPQGIDW---- 130
            I  E       LTGGEPLL+ D+P  ++ L++     EIA+ +NG +   Q  D     
Sbjct: 64  AIFTELGVDKVRLTGGEPLLRRDLPRFVRQLSENRRITEIALTSNGVLMADQAADLSFAG 123

Query: 131 ---ICVS 134
              + +S
Sbjct: 124 LNRVTIS 130


>gi|294678386|ref|YP_003579001.1| [pyruvate formate-lyase]-activating enzyme [Rhodobacter capsulatus
           SB 1003]
 gi|294477206|gb|ADE86594.1| [pyruvate formate-lyase]-activating enzyme-2 [Rhodobacter
           capsulatus SB 1003]
          Length = 262

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 43/117 (36%), Gaps = 23/117 (19%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           G   VF   SGC             +C +C   DT     +   G R  V+ L   +   
Sbjct: 38  GMRFVFF-LSGC-----------QFRCLYCHNPDT----WKLHAGRRVAVEDLVAEVAPL 81

Query: 78  WITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKR-GFEIAVETNGTIEPPQGIDWI 131
               +  G     +GGEP++Q        +AL  R G  +A++T G +      DW 
Sbjct: 82  ASFLKFAGG-VTFSGGEPMMQAAFVHATARALKDRFGLHVALDTQGHLHDRVTDDWF 137


>gi|154173832|ref|YP_001407349.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Campylobacter curvus 525.92]
 gi|112802456|gb|EAT99800.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Campylobacter curvus 525.92]
          Length = 225

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 26/128 (20%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           GRVA    F+GCN+           +C +C   +        G+ + ++  + ++ +   
Sbjct: 18  GRVAAIVWFAGCNM-----------RCAYC---YNIDVVLSRGKLSAEEFCEFLDRRIGK 63

Query: 81  GEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWIC 132
                   V +GGE  L Q  +PL + + KRGF + V+TNG+  P          ID+I 
Sbjct: 64  LSG----IVFSGGECTLSQSFLPLAREVKKRGFALKVDTNGSNLPVLKEAISQNLIDYIA 119

Query: 133 VSPKAGCD 140
           +  KA  +
Sbjct: 120 LDFKAPKE 127


>gi|169825862|ref|YP_001696020.1| hypothetical protein Bsph_0261 [Lysinibacillus sphaericus C3-41]
 gi|168990350|gb|ACA37890.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 305

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C FC  T          G   V+Q   +++E     +    +   
Sbjct: 29  CNL-----------ACSFCPPTARA------KGLIKVEQFNKILDEIRPHTKYIYLHVK- 70

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             GEPLL   +  L+ A + +GF++ + TNGT+
Sbjct: 71  --GEPLLHPRIDQLLDAAHAKGFKVNITTNGTL 101


>gi|166031808|ref|ZP_02234637.1| hypothetical protein DORFOR_01509 [Dorea formicigenerans ATCC
           27755]
 gi|166028261|gb|EDR47018.1| hypothetical protein DORFOR_01509 [Dorea formicigenerans ATCC
           27755]
          Length = 241

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 32/122 (26%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
            E F ++ G G          RF    +GC +           +C+FC            
Sbjct: 8   TESFGSVDGPG---------VRFVIFTAGCPM-----------RCQFC----HNPDTWNM 43

Query: 63  GRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
               +    DLI++        G      ++GGEPLLQ+D    L +   + G    ++T
Sbjct: 44  KTGTLTSTDDLIKKALRYRSYWGNEGGITVSGGEPLLQIDFLTELFKKAKENGIHTTLDT 103

Query: 119 NG 120
           +G
Sbjct: 104 SG 105


>gi|302669484|ref|YP_003829444.1| pyruvate formate-lyase activating enzyme PflA [Butyrivibrio
           proteoclasticus B316]
 gi|302393957|gb|ADL32862.1| pyruvate formate-lyase activating enzyme PflA [Butyrivibrio
           proteoclasticus B316]
          Length = 255

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 28/118 (23%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        VF    GCNL           +C++C   DT          
Sbjct: 19  VETFGSVDGPGIRFI----VF--LKGCNL-----------RCKYCHNADT----WNPQSD 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
                ++L D   E++     E     ++GGEPLLQ+D  +   +   +RG    ++T
Sbjct: 58  DMRTPEELLD-FAERYRGYWGEDGGITVSGGEPLLQIDFLIEFFKMAKERGINTCIDT 114


>gi|17549186|ref|NP_522526.1| putative ribonucleotide reductase activating transmembrane protein
           [Ralstonia solanacearum GMI1000]
 gi|17431438|emb|CAD18116.1| putative ribonucleotide reductase activating transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 246

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 28/128 (21%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G++A  VF   +GC             +C +C          +    +  ++ D +  + 
Sbjct: 44  GQLAAVVFI--AGCP-----------WRCHYC---HNPHLQERARGLDWREVLDFLGRRR 87

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
              +      V +GGEPL +  +P LI A    G  I + T G            +DW+ 
Sbjct: 88  NLLDA----VVFSGGEPLSEPRLPQLIDAARALGLRIGLHTGGIYPARFAEVLPRLDWVG 143

Query: 133 VSPKAGCD 140
           +  K    
Sbjct: 144 LDIKTTAP 151


>gi|257876713|ref|ZP_05656366.1| pyruvate formate-lyase activating enzyme [Enterococcus
           casseliflavus EC20]
 gi|257810879|gb|EEV39699.1| pyruvate formate-lyase activating enzyme [Enterococcus
           casseliflavus EC20]
          Length = 251

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 30/121 (24%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
            E F ++ G G          RF     GC             +C+FC        GT  
Sbjct: 10  TESFGSVDGPG---------IRFIVFMQGC-----------RMRCQFCHNPDTWKIGTGV 49

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETN 119
            R   D L + ++ +   G+K G    ++GGEPLLQ+D  LI         G    ++T 
Sbjct: 50  ERTTDDVLEEALKYREFWGQKGG--ITVSGGEPLLQMDF-LIDLFRKAKAEGVSTTLDTC 106

Query: 120 G 120
           G
Sbjct: 107 G 107


>gi|299535209|ref|ZP_07048533.1| hypothetical protein BFZC1_04293 [Lysinibacillus fusiformis ZC1]
 gi|298729330|gb|EFI69881.1| hypothetical protein BFZC1_04293 [Lysinibacillus fusiformis ZC1]
          Length = 291

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C FC  T          G   V+Q   +++E     +    +   
Sbjct: 15  CNL-----------ACSFCPPTARA------KGLIKVEQFNKILDEIRPHTKYIYLHVK- 56

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             GEPLL   +  L+ A + +GF++ + TNGT+
Sbjct: 57  --GEPLLHPRIDQLLDAAHAKGFKVNITTNGTL 87


>gi|325262177|ref|ZP_08128915.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp.
           D5]
 gi|324033631|gb|EGB94908.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp.
           D5]
          Length = 296

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 57/181 (31%), Gaps = 59/181 (32%)

Query: 1   MKLYSIKEI-FLTL-QGEGGHAGRVAVFCRFSGCNL---WSGREQDR--------LSAQC 47
           M++ ++ +I + +L  G G       VF    GCNL   W    +             +C
Sbjct: 1   MQMMTVNQIQYFSLYDGPGIRT---TVF--LQGCNLRCAWCHNPETWSLYASVSYAKERC 55

Query: 48  RFC--------------DTDFVGIQGTK-------------------GGRYNVDQLADLI 74
             C              D +    +  K                   G +Y+   L + +
Sbjct: 56  VQCGACGSVCPSHAHIFDENKHLFEPEKCIRCGACAEVCCTEALEMNGTQYSAVGLYEKL 115

Query: 75  EEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
                  E        +GGEPLLQ      +   L K G  +A+ET   ++ P    W  
Sbjct: 116 VRDQRLYEISNGGVTFSGGEPLLQWEALEEICVMLRKNGIHVAMET--ALDLP----WKT 169

Query: 133 V 133
           V
Sbjct: 170 V 170


>gi|217420779|ref|ZP_03452284.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia
           pseudomallei 576]
 gi|217396191|gb|EEC36208.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia
           pseudomallei 576]
          Length = 227

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 26/130 (20%)

Query: 17  GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           G  A    VF    GC             +C +C    +  +         D L   +  
Sbjct: 14  GQFA--AVVFV--QGCP-----------WRCGYCHNPHLQPRSQPAE-IEWDALLAFLAR 57

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE-----PPQGIDW 130
           +    +      V +GGEP +   +   I  + + GF++ + + GT           +DW
Sbjct: 58  RVGLIDA----VVFSGGEPSIDPALAASIDDVRRLGFKVGLHSAGTHPRRLAHLLPSLDW 113

Query: 131 ICVSPKAGCD 140
           I +  KA  D
Sbjct: 114 IGLDVKAPFD 123


>gi|53719965|ref|YP_108951.1| putative pyruvate radical-activating enzyme [Burkholderia
           pseudomallei K96243]
 gi|53725684|ref|YP_102410.1| radical SAM domain-containing protein [Burkholderia mallei ATCC
           23344]
 gi|76811377|ref|YP_334194.1| radical SAM domain-containing protein [Burkholderia pseudomallei
           1710b]
 gi|121598521|ref|YP_993691.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia mallei SAVP1]
 gi|124384170|ref|YP_001028848.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia mallei NCTC 10229]
 gi|126440040|ref|YP_001059711.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia pseudomallei 668]
 gi|126450188|ref|YP_001081241.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia mallei NCTC 10247]
 gi|167001134|ref|ZP_02266935.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia mallei PRL-20]
 gi|167720455|ref|ZP_02403691.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia pseudomallei DM98]
 gi|167739449|ref|ZP_02412223.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia pseudomallei 14]
 gi|167825055|ref|ZP_02456526.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia pseudomallei 9]
 gi|167895144|ref|ZP_02482546.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia pseudomallei 7894]
 gi|167903530|ref|ZP_02490735.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia pseudomallei NCTC 13177]
 gi|167911777|ref|ZP_02498868.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia pseudomallei 112]
 gi|167919782|ref|ZP_02506873.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia pseudomallei BCC215]
 gi|238562381|ref|ZP_00440588.2| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia mallei GB8 horse 4]
 gi|254184291|ref|ZP_04890881.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia
           pseudomallei 1655]
 gi|254261769|ref|ZP_04952823.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia
           pseudomallei 1710a]
 gi|52210379|emb|CAH36360.1| putative pyruvate radical-activating enzyme [Burkholderia
           pseudomallei K96243]
 gi|52429107|gb|AAU49700.1| radical SAM domain protein [Burkholderia mallei ATCC 23344]
 gi|76580830|gb|ABA50305.1| radical SAM domain protein [Burkholderia pseudomallei 1710b]
 gi|121227331|gb|ABM49849.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia mallei SAVP1]
 gi|124292190|gb|ABN01459.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia mallei NCTC 10229]
 gi|126219533|gb|ABN83039.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia pseudomallei 668]
 gi|126243058|gb|ABO06151.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia mallei NCTC 10247]
 gi|184214822|gb|EDU11865.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia
           pseudomallei 1655]
 gi|238522812|gb|EEP86254.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia mallei GB8 horse 4]
 gi|243063082|gb|EES45268.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia mallei PRL-20]
 gi|254220458|gb|EET09842.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia
           pseudomallei 1710a]
          Length = 239

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 26/130 (20%)

Query: 17  GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           G  A    VF    GC             +C +C    +  +         D L   +  
Sbjct: 26  GQFA--AVVFV--QGCP-----------WRCGYCHNPHLQPRSQPAE-IEWDALLAFLAR 69

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE-----PPQGIDW 130
           +    +      V +GGEP +   +   I  + + GF++ + + GT           +DW
Sbjct: 70  RVGLIDA----VVFSGGEPSIDPALAASIDDVRRLGFKVGLHSAGTHPRRLAHLLPSLDW 125

Query: 131 ICVSPKAGCD 140
           I +  KA  D
Sbjct: 126 IGLDVKAPFD 135


>gi|134278002|ref|ZP_01764717.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia pseudomallei 305]
 gi|226199930|ref|ZP_03795480.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia
           pseudomallei Pakistan 9]
 gi|254177591|ref|ZP_04884246.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia mallei ATCC 10399]
 gi|254191326|ref|ZP_04897830.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254195707|ref|ZP_04902133.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia pseudomallei S13]
 gi|254199311|ref|ZP_04905677.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia mallei FMH]
 gi|254205625|ref|ZP_04911977.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia mallei JHU]
 gi|254296954|ref|ZP_04964407.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia pseudomallei 406e]
 gi|134251652|gb|EBA51731.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia pseudomallei 305]
 gi|147748907|gb|EDK55981.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia mallei FMH]
 gi|147753068|gb|EDK60133.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia mallei JHU]
 gi|157808020|gb|EDO85190.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia pseudomallei 406e]
 gi|157938998|gb|EDO94668.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia pseudomallei Pasteur 52237]
 gi|160698630|gb|EDP88600.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia mallei ATCC 10399]
 gi|169652452|gb|EDS85145.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia pseudomallei S13]
 gi|225927986|gb|EEH24023.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia
           pseudomallei Pakistan 9]
          Length = 227

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 26/130 (20%)

Query: 17  GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           G  A    VF    GC             +C +C    +  +         D L   +  
Sbjct: 14  GQFA--AVVFV--QGCP-----------WRCGYCHNPHLQPRSQPAE-IEWDALLAFLAR 57

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE-----PPQGIDW 130
           +    +      V +GGEP +   +   I  + + GF++ + + GT           +DW
Sbjct: 58  RVGLIDA----VVFSGGEPSIDPALAASIDDVRRLGFKVGLHSAGTHPRRLAHLLPSLDW 113

Query: 131 ICVSPKAGCD 140
           I +  KA  D
Sbjct: 114 IGLDVKAPFD 123


>gi|262067515|ref|ZP_06027127.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378778|gb|EFE86296.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium
           periodonticum ATCC 33693]
          Length = 243

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 26/103 (25%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C +C   DT        K   Y  +++   + +   
Sbjct: 19  IRFVVFMQGCPL-----------RCLYCHNVDT---WELKDKNYIYTPNEILAELNKVKA 64

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
                      +GGEPL+Q    + L +   + G   A++T+G
Sbjct: 65  FLTGG---ITASGGEPLMQASFILELFKLCKENGIHTALDTSG 104


>gi|312879763|ref|ZP_07739563.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Aminomonas paucivorans DSM 12260]
 gi|310783054|gb|EFQ23452.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Aminomonas paucivorans DSM 12260]
          Length = 227

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 27/124 (21%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
            AVF R  GCNL           +C FC       +   G   ++D   +++ +     +
Sbjct: 26  AAVFTR--GCNL-----------RCPFC----HNPELVLGRSESLDP-EEILGDLRRRRD 67

Query: 83  KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS 134
                  ++GGEP LQ  +   ++ +   G  + ++TNGT+            +D + + 
Sbjct: 68  FLDG-VAVSGGEPCLQSGLASFLRRVVDLGLGVKLDTNGTLPQVLEPLLEEGLVDQVALD 126

Query: 135 PKAG 138
            KA 
Sbjct: 127 VKAP 130


>gi|260170418|ref|ZP_05756830.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D2]
 gi|315918774|ref|ZP_07915014.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D2]
 gi|313692649|gb|EFS29484.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D2]
          Length = 205

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 21/112 (18%)

Query: 11  LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL 70
           LT+ GEG           F GC L           +C++C             RY+ +QL
Sbjct: 14  LTIDGEGVTTLVA-----FHGCPL-----------RCKYCLNPTSLQPDGVWERYDCNQL 57

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI---QALNKRGFEIAVETN 119
            + + +  +            GGEPLLQ     I   + L    + I VET+
Sbjct: 58  YEEVRKDELYFLASCGGVTFGGGEPLLQN--EFIRQFRQLCGPEWRITVETS 107


>gi|283488054|gb|ADB24720.1| NirJ [Methylomonas sp. 16a]
          Length = 379

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            +       R +  C+ C T    I     G     ++  ++++       +    +L+G
Sbjct: 26  PVVIWNLIRRCNLTCKHCYTTSADIDFP--GELTTPEIYAVMDDLKA---FKVPVLILSG 80

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           GEPLL  D+ P+ Q  +  GF +A+ +NGT+     I+ I
Sbjct: 81  GEPLLHPDIFPISQRASDMGFYVALSSNGTLIDKNNIEQI 120


>gi|227551205|ref|ZP_03981254.1| [formate-C-acetyltransferase]-activating enzyme [Enterococcus
           faecium TX1330]
 gi|257896172|ref|ZP_05675825.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           Com12]
 gi|293377172|ref|ZP_06623380.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           PC4.1]
 gi|227179673|gb|EEI60645.1| [formate-C-acetyltransferase]-activating enzyme [Enterococcus
           faecium TX1330]
 gi|257832737|gb|EEV59158.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           Com12]
 gi|292644192|gb|EFF62294.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           PC4.1]
          Length = 253

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 31/127 (24%)

Query: 8   EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F ++ G G        VF    GC             +C+FC   DT  +G     G 
Sbjct: 13  ETFGSVDGPGLRFV----VFM--QGC-----------RMRCQFCHNPDTWNIG----GGK 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG- 120
            Y+ D+L D  E        +     ++GGEPLLQ+D  + L +   +R     ++T G 
Sbjct: 52  EYSADELLDKAERFRPY-WGDKGGITVSGGEPLLQIDFLIELFKKAKERKMHTTLDTCGK 110

Query: 121 --TIEPP 125
             T E P
Sbjct: 111 PFTYEDP 117


>gi|281357638|ref|ZP_06244125.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
 gi|281315895|gb|EFA99921.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
          Length = 482

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 20/98 (20%)

Query: 26  FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F R   CN            +C +C   + G   T+    +  +LAD +  Q    E   
Sbjct: 30  FNRL--CNY-----------RCPYC---YAGDPETELPEMSS-ELADSVIRQ--AAELGA 70

Query: 86  RYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           R  V+ GGEPLL  ++   I+ +N  G    + TNG +
Sbjct: 71  RKVVILGGEPLLYPELERKIELVNSLGMGAEIFTNGAL 108


>gi|69248399|ref|ZP_00604735.1| Formate acetyltransferase activating enzyme [Enterococcus faecium
           DO]
 gi|257878034|ref|ZP_05657687.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,230,933]
 gi|257881180|ref|ZP_05660833.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,502]
 gi|257884843|ref|ZP_05664496.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,501]
 gi|257889767|ref|ZP_05669420.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,410]
 gi|257892296|ref|ZP_05671949.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,408]
 gi|258616472|ref|ZP_05714242.1| pyruvate formate-lyase activating enzyme [Enterococcus faecium DO]
 gi|260559084|ref|ZP_05831270.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           C68]
 gi|293563436|ref|ZP_06677885.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1162]
 gi|293568151|ref|ZP_06679487.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1071]
 gi|294622318|ref|ZP_06701361.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           U0317]
 gi|314938046|ref|ZP_07845356.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133a04]
 gi|314941968|ref|ZP_07848829.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133C]
 gi|314948779|ref|ZP_07852151.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0082]
 gi|314951797|ref|ZP_07854836.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133A]
 gi|314991796|ref|ZP_07857254.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133B]
 gi|314995837|ref|ZP_07860924.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133a01]
 gi|68194435|gb|EAN08938.1| Formate acetyltransferase activating enzyme [Enterococcus faecium
           DO]
 gi|257812262|gb|EEV41020.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,230,933]
 gi|257816838|gb|EEV44166.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,502]
 gi|257820681|gb|EEV47829.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,501]
 gi|257826127|gb|EEV52753.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,410]
 gi|257828675|gb|EEV55282.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,408]
 gi|260074841|gb|EEW63157.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           C68]
 gi|291589141|gb|EFF20953.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1071]
 gi|291598210|gb|EFF29308.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           U0317]
 gi|291604697|gb|EFF34182.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1162]
 gi|313589941|gb|EFR68786.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133a01]
 gi|313593607|gb|EFR72452.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133B]
 gi|313596076|gb|EFR74921.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133A]
 gi|313599220|gb|EFR78065.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133C]
 gi|313642621|gb|EFS07201.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133a04]
 gi|313644845|gb|EFS09425.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0082]
          Length = 253

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 28/119 (23%)

Query: 8   EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F ++ G G        VF    GC             +C+FC   DT  +G     G 
Sbjct: 13  ETFGSVDGPGLRFV----VFM--QGC-----------RMRCQFCHNPDTWNIG----GGK 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
            Y  D+L D  E        +     ++GGEPLLQ+D  + L +   +R     ++T G
Sbjct: 52  EYTADELLDKAERFRPY-WGDKGGITVSGGEPLLQIDFLIELFKKAKERKMHTTLDTCG 109


>gi|15678091|ref|NP_275205.1| molybdenum cofactor biosynthesis A (MoaA) related protein
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621099|gb|AAB84569.1| molybdenum cofactor biosynthesis A (MoaA) related protein
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 250

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 12/107 (11%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
           +CR+C       + +    ++ D++ADLI  Q I  E      ++ GGEP LQ D+P + 
Sbjct: 48  RCRYC-----FFKPSGCMNHSPDRIADLI--QRIRDETGVERVLIAGGEPTLQEDLPELT 100

Query: 106 ALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
            +    F + +  NGT    + + W+    +   DLK     E K +
Sbjct: 101 EILAGDFHVTISPNGTR---RDVLWMSTFHEVHVDLK--ALDEEKHI 142


>gi|261823320|ref|YP_003261426.1| glycyl-radical enzyme activating protein family [Pectobacterium
           wasabiae WPP163]
 gi|261607333|gb|ACX89819.1| glycyl-radical enzyme activating protein family [Pectobacterium
           wasabiae WPP163]
          Length = 305

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 9/107 (8%)

Query: 33  NLWSGREQDRLSAQC-RFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
             +  RE+      C   C T  + +   KG R +V ++   ++++     + G    L+
Sbjct: 81  PFFIDRERCIQCGDCTHVCPTQALEM---KGKRMSVGEVVRELQKEENLFRRSGGGITLS 137

Query: 92  GGEPLLQVDV--PLIQALNKRGFEIAVETNG--TIEPPQGID-WICV 133
           GGEPL Q +    L++A  ++G+  A+ET G  T E  + +  W+ +
Sbjct: 138 GGEPLAQPEFARELLKACKEKGWHTAIETTGFTTKEVVEDVFPWVDL 184


>gi|293556778|ref|ZP_06675341.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1039]
 gi|291601110|gb|EFF31399.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1039]
          Length = 253

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 28/119 (23%)

Query: 8   EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F ++ G G        VF    GC             +C+FC   DT  +G     G 
Sbjct: 13  ETFGSVDGPGLRFV----VFM--QGC-----------RMRCQFCHNPDTWNIG----GGK 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
            Y  D+L D  E        +     ++GGEPLLQ+D  + L +   +R     ++T G
Sbjct: 52  EYTADELLDKAERFRPY-WGDKGGITVSGGEPLLQIDFLIELFKKAKERKMHTTLDTCG 109


>gi|261403758|ref|YP_003247982.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
 gi|261370751|gb|ACX73500.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
          Length = 471

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C+ C   +             ++   +I+   I G+        +
Sbjct: 123 CNL-----------RCKHC---YANAGRPLEDELTTEEAEKVID---ILGDAGVVAIAFS 165

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPL++ D+  LI  + ++  ++++ TNGT+
Sbjct: 166 GGEPLMRKDIFKLIDKVKEKDMQVSIATNGTL 197


>gi|16081418|ref|NP_393756.1| molybdenum cofactor synthesis-step 1 (MOCS1) related protein
           [Thermoplasma acidophilum DSM 1728]
 gi|10639419|emb|CAC11421.1| molybdenum cofactor synthesis-step 1 (MOCS1) related protein
           [Thermoplasma acidophilum]
          Length = 310

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 28/110 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C+ C          +G  +   DQ+   ++E    G    +   +
Sbjct: 9   CNL-----------RCKSC-------NAWQGKIFFPEDQIDKHLQEMKNNG---IKIVSV 47

Query: 91  TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134
           TGGEP L  + V +I+ L +  F   + TNGT           +D + +S
Sbjct: 48  TGGEPTLNKNVVDIIRKLKENHFFTHIATNGTNPYVLRKLYPYLDAVTIS 97


>gi|330835444|ref|YP_004410172.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4]
 gi|329567583|gb|AEB95688.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4]
          Length = 369

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 25/111 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C         +   ++    L+  IE      +   ++ +L+
Sbjct: 39  CNL-----------RCLHC------YSSSGTQQFYDLPLSVWIEAVKQASDMGVKHILLS 81

Query: 92  GGEPLLQVDVPLIQALN-KRGFEIAVETNGTI-------EPPQGIDWICVS 134
           GGEPL + D+ LI     +RG  + + TNGT+       E  + +D+I VS
Sbjct: 82  GGEPLARRDLSLIAREAWERGIRVELSTNGTMLTRERLEELRKYVDYIGVS 132


>gi|325262719|ref|ZP_08129455.1| pyruvate formate-lyase 1-activating enzyme [Clostridium sp. D5]
 gi|324031813|gb|EGB93092.1| pyruvate formate-lyase 1-activating enzyme [Clostridium sp. D5]
          Length = 257

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 30/120 (25%)

Query: 8   EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F ++ G G  +     +F   SGC           + +C+FC   DT         G 
Sbjct: 15  ESFGSVDGPGVRYI----IFM--SGC-----------AMRCQFCHNPDT----WNMQSGT 53

Query: 64  RYNVDQLA-DLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           +Y  D+L    ++ +   G K G    ++GGEPLLQ+D    L Q     G    ++T+G
Sbjct: 54  QYTADELLKQAVKYRSYWGSKGG--ITVSGGEPLLQIDFLTELFQKAKAEGIHTTLDTSG 111


>gi|126451746|ref|YP_001066995.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia pseudomallei 1106a]
 gi|167816652|ref|ZP_02448332.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia pseudomallei 91]
 gi|167846563|ref|ZP_02472071.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia pseudomallei B7210]
 gi|242317715|ref|ZP_04816731.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia
           pseudomallei 1106b]
 gi|126225388|gb|ABN88928.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia
           pseudomallei 1106a]
 gi|242140954|gb|EES27356.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia
           pseudomallei 1106b]
          Length = 239

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 26/130 (20%)

Query: 17  GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           G  A    VF    GC             +C +C    +  +         D L   +  
Sbjct: 26  GQFA--AVVFV--QGCP-----------WRCGYCHNPHLQPRSQPAE-IEWDALLAFLAR 69

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE-----PPQGIDW 130
           +    +      V +GGEP +   +   I  + + GF+I + + GT           +DW
Sbjct: 70  RVGLIDA----VVFSGGEPSIDPALAASIDDVRRLGFKIGLHSAGTHPRRLAHLLPSLDW 125

Query: 131 ICVSPKAGCD 140
           I +  KA  D
Sbjct: 126 IGLDVKAPFD 135


>gi|282163323|ref|YP_003355708.1| probable molybdenum cofactor biosynthesis protein A [Methanocella
           paludicola SANAE]
 gi|282155637|dbj|BAI60725.1| probable molybdenum cofactor biosynthesis protein A [Methanocella
           paludicola SANAE]
          Length = 312

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 73/184 (39%), Gaps = 36/184 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           QC +C       +   GG   VD++A L+    I  +        +
Sbjct: 24  CNL-----------QCIYC---HNEGESGSGGEITVDEIARLV---RIATKYGVDRVKFS 66

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPP-------QGIDWICVS----PKAGC 139
           GGEPLL+ D+  +++AL     +I++ TNGT+  P        G+D + +S         
Sbjct: 67  GGEPLLRTDLEDILRALPPL-KDISLTTNGTLLAPRAKGLKEAGLDRVNISLDTMDSGRF 125

Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199
           DL  +   +   V   +N + +   G    + ++  + G   E+     I +    P   
Sbjct: 126 DLITQRKGQFSRVMDGINAAID--AGLTPVKLNMVYLKG-INEDEIERMIEFIRGRP--- 179

Query: 200 LSVQ 203
           L +Q
Sbjct: 180 LVLQ 183


>gi|229083745|ref|ZP_04216065.1| hypothetical protein bcere0022_4110 [Bacillus cereus Rock3-44]
 gi|228699549|gb|EEL52214.1| hypothetical protein bcere0022_4110 [Bacillus cereus Rock3-44]
          Length = 243

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKESGIHTTIDSSG 107


>gi|160933944|ref|ZP_02081331.1| hypothetical protein CLOLEP_02806 [Clostridium leptum DSM 753]
 gi|156866617|gb|EDO59989.1| hypothetical protein CLOLEP_02806 [Clostridium leptum DSM 753]
          Length = 284

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 22/138 (15%)

Query: 24  AVFCRFSGCNLWSGREQDRLSA--------------QCRFCDTD-FVGIQGTKGGRYNVD 68
            VF    GCN+      +  +                C  CD   + G +   G +  V 
Sbjct: 31  TVF--LKGCNMDCAWCHNPETISFEPEMIVDESKCIGCGKCDEGCYSGAKRWVGTQKTVG 88

Query: 69  QLA-DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPP 125
           Q+  +++ +Q   GE  G    ++GGEP  Q      L++A  + G    VE+N +++  
Sbjct: 89  QVLKEVLLDQPYYGEDGG--VTISGGEPTCQPVFTRELLKACKEAGISCGVESNLSVDWA 146

Query: 126 QGIDWICVSPKAGCDLKI 143
              +   +     CDLKI
Sbjct: 147 ILKEIASLCDVFMCDLKI 164


>gi|260858070|ref|YP_003231961.1| pyruvate formate lyase II activase [Escherichia coli O26:H11 str.
           11368]
 gi|257756719|dbj|BAI28221.1| pyruvate formate lyase II activase [Escherichia coli O26:H11 str.
           11368]
 gi|323155511|gb|EFZ41690.1| glycyl-radical enzyme activating family protein [Escherichia coli
           EPECa14]
          Length = 292

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 66/177 (37%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G +   + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLRLWGVSCAIETAGDVPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195


>gi|237740458|ref|ZP_04570939.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 2_1_31]
 gi|229422475|gb|EEO37522.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 2_1_31]
          Length = 243

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 26/103 (25%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C +C   DT        K   Y  +++   + +   
Sbjct: 19  IRFVVFMQGCPL-----------RCLYCHNVDT---WELKDKNYIYTPNEILAELNKVKA 64

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
                      +GGEPL+Q    + L +   + G   A++T+G
Sbjct: 65  FLTGG---ITASGGEPLMQASFILELFKLCKENGIHTALDTSG 104


>gi|86741286|ref|YP_481686.1| radical SAM family protein [Frankia sp. CcI3]
 gi|86568148|gb|ABD11957.1| Radical SAM [Frankia sp. CcI3]
          Length = 332

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 41/118 (34%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C                R  V+Q    ++E             L 
Sbjct: 38  CNLAC--------EGCG----KIQHPADVLKQRMPVEQALAAVDECG------APVVCLA 79

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  ++  L KR   I + TN  +  P+ ID +  SP     + I G +E
Sbjct: 80  GGEPLMHPQIEDIVAGLVKRKKFIYLCTN-ALLIPRKIDKLRPSPYLSFAVHIDGLEE 136


>gi|167748650|ref|ZP_02420777.1| hypothetical protein ANACAC_03424 [Anaerostipes caccae DSM 14662]
 gi|317470908|ref|ZP_07930287.1| glycyl-radical enzyme activating protein family [Anaerostipes sp.
           3_2_56FAA]
 gi|167651964|gb|EDR96093.1| hypothetical protein ANACAC_03424 [Anaerostipes caccae DSM 14662]
 gi|316901559|gb|EFV23494.1| glycyl-radical enzyme activating protein family [Anaerostipes sp.
           3_2_56FAA]
          Length = 297

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
           G     +++ + +               L+GGEP++Q D  + L++   + G   A+ET+
Sbjct: 98  GEEMTAEEVLEEVCIDQAFFRTSKGGITLSGGEPMIQADFVLELLKKSKEMGLSTAIETS 157

Query: 120 G 120
           G
Sbjct: 158 G 158


>gi|15679581|ref|NP_276698.1| pyruvate formate-lyase activating enzyme [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622709|gb|AAB86059.1| pyruvate formate-lyase activating enzyme [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 233

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 27/122 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +F   +GCN            +C +C           G   +++ + D +E      E  
Sbjct: 24  IF--TAGCNF-----------RCPYC---HNPELIDGGDEVDLETVLDDVERYSEFVEA- 66

Query: 85  GRYCVLTGGEPLLQVDVPLIQALNKR--GFEIAVETNGTIEPP-----QGIDWICVSPKA 137
               V++GGEPLLQVD       + R  G    ++TNG+           +D++ +  KA
Sbjct: 67  ---LVVSGGEPLLQVDALETVLEHARSLGLATKLDTNGSYPEALEGYCPTLDYVAIDVKA 123

Query: 138 GC 139
             
Sbjct: 124 PL 125


>gi|262191309|ref|ZP_06049502.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae CT
           5369-93]
 gi|262032805|gb|EEY51350.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae CT
           5369-93]
          Length = 246

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 52/156 (33%), Gaps = 27/156 (17%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT         G    V+++    +      
Sbjct: 25  VF--LQGC-----------LFRCKYCHNRDT----WDTHTGREVTVEEIIKEAKSYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGIDWICVSPKAG 138
              G     +GGE +LQ +      +A    G    ++TNG   +    ID +       
Sbjct: 68  NASGGGVTCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYVRKFTPVIDEVL----EV 123

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
            DL +   +++     Q  +   N    DF R+  Q
Sbjct: 124 TDLVMLDIKQMDDEIHQDLIGVSNKRTLDFARYLHQ 159


>gi|170755341|ref|YP_001782853.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum B1
           str. Okra]
 gi|169120553|gb|ACA44389.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum B1
           str. Okra]
          Length = 232

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 23/101 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G   + D++   +       
Sbjct: 22  VF--FQGC-----------QLRCVYCHNPDT----WDFNAGIEISSDEVLKKVLRYKPY- 63

Query: 82  EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120
            K+      +GGEPL+Q +  L  ++    +G    ++T+G
Sbjct: 64  FKQVGGITCSGGEPLMQPEFLLKILKKCKNQGIHTLLDTSG 104


>gi|295084358|emb|CBK65881.1| Pyruvate-formate lyase-activating enzyme [Bacteroides xylanisolvens
           XB1A]
          Length = 205

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 21/112 (18%)

Query: 11  LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL 70
           LT+ GEG           F GC L           +C++C             RY+ +QL
Sbjct: 14  LTIDGEGVTTLVA-----FHGCPL-----------RCKYCLNPTSLQPDGVWERYDCNQL 57

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI---QALNKRGFEIAVETN 119
            + + +  +            GGEPLLQ     I   + L    + I VET+
Sbjct: 58  YEEVRKDELYFLASCGGVTFGGGEPLLQS--EFIRQFRQLCGPEWRITVETS 107


>gi|195952719|ref|YP_002121009.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932331|gb|ACG57031.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 358

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 28/127 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC +     +  +   ++ + + D++++     +   ++ VL+
Sbjct: 33  CNL-----------SCIFCYS--SAKKAKQPSYFDKNNIKDIVKKL---SDLNTKFVVLS 76

Query: 92  GGEPLLQVDVPLI-QALNKRGFEIAVETNGTI-------EPPQGIDWICVSPKAGCDLKI 143
           GGEPLL  D+  + + L + G  +++ TNG +             D++ +S     D K 
Sbjct: 77  GGEPLLYDDIYYVSELLREHGINVSLSTNGLLIDNDNIELIKTHFDYVGIS----IDGKE 132

Query: 144 KGGQELK 150
           K    L+
Sbjct: 133 KTHDTLR 139


>gi|149926429|ref|ZP_01914690.1| molybdenum cofactor biosynthesis protein A [Limnobacter sp. MED105]
 gi|149824792|gb|EDM84006.1| molybdenum cofactor biosynthesis protein A [Limnobacter sp. MED105]
          Length = 372

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 25/136 (18%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +        + +++  +  E    G ++ R   LTGGE
Sbjct: 47  DRCNFRCVYCMPKSIFDKDYQFL--PHKDLLSFEEIERVAREFVALGVEKIR---LTGGE 101

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTI-------EPPQGIDWICVSPKAGCD 140
           PLL+ ++  LI+ L +      +  EI + TNGT+           G++ + VS  A  D
Sbjct: 102 PLLRKNIEILIEQLARLRTPSGKPVEITLTTNGTLLRKKSRTLKEAGLNRVTVSLDAIDD 161

Query: 141 LKIKGGQELKLVFPQV 156
              K   ++     +V
Sbjct: 162 AVFKAMNDVDFSVDEV 177


>gi|294782458|ref|ZP_06747784.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp.
           1_1_41FAA]
 gi|294481099|gb|EFG28874.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp.
           1_1_41FAA]
          Length = 243

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 26/103 (25%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C +C   DT        K   Y  +++   + +   
Sbjct: 19  IRFVVFMQGCPL-----------RCLYCHNVDT---WELKDKNYIYTPNEILAELNKVKA 64

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
                      +GGEPL+Q    + L +   + G   A++T+G
Sbjct: 65  FLTGG---ITASGGEPLMQASFILELFKLCKENGIHTALDTSG 104


>gi|297618570|ref|YP_003706675.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanococcus voltae A3]
 gi|297618630|ref|YP_003706735.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanococcus voltae A3]
 gi|297377547|gb|ADI35702.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanococcus voltae A3]
 gi|297377607|gb|ADI35762.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanococcus voltae A3]
          Length = 257

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 45/181 (24%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF  FS CN+  G  Q+    Q              +      +Q+ + ++  +      
Sbjct: 22  VF--FSDCNMKCGYCQNYDHMQ-------------ERMQELTAEQIFNGMDRMFSEA--- 63

Query: 85  GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVSP 135
               V++GGEP LQ+D    L+    +   +  ++TNGT             +D++ +  
Sbjct: 64  ---IVISGGEPTLQLDGVKELLIIARENNLKTKLDTNGTNPEAVKELLNENLLDYVAMDV 120

Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTN---LAISYC 192
           K G D  +K        +   N+  ++   F        P++  F E+        I YC
Sbjct: 121 KCGFDNYLKFTN-----YKNENIENKSEEEFK-------PINDKFKEKMKQNILKIIKYC 168

Query: 193 F 193
            
Sbjct: 169 K 169


>gi|153955615|ref|YP_001396380.1| glycyl radical activating protein [Clostridium kluyveri DSM 555]
 gi|146348473|gb|EDK35009.1| Predicted glycyl radical enzyme activator [Clostridium kluyveri DSM
           555]
          Length = 301

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 10/111 (9%)

Query: 30  SGCNLWSGREQDRLSAQ-----CRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWITGE 82
             C    G   ++   +     C  C T+       K     YN +Q+  +IE+Q I   
Sbjct: 65  QVCPYGVGINLNQRLEREKCKSCGLC-TEVCTTNSRKNLIYHYNSEQILKIIEKQRIFYR 123

Query: 83  KEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
             G     +GGE  LQ D+   L+  L  +  ++A+ET+G  +  +  D +
Sbjct: 124 YSGGGVTFSGGEATLQTDILRELVNKLYDKAIDLAIETSGHFQFDKVKDIL 174


>gi|228983710|ref|ZP_04143909.1| hypothetical protein bthur0001_4290 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228776018|gb|EEM24385.1| hypothetical protein bthur0001_4290 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 243

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSG 107


>gi|49480125|ref|YP_034775.1| formate acetyltransferase activating enzyme (pyruvate formate-lyase
           activating enzyme) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49331681|gb|AAT62327.1| formate acetyltransferase activating enzyme (pyruvate formate-lyase
           activating enzyme) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 243

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSG 107


>gi|254302663|ref|ZP_04970021.1| [formate-C-acetyltransferase]-activating enzyme [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148322855|gb|EDK88105.1| [formate-C-acetyltransferase]-activating enzyme [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 243

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 26/103 (25%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C +C   DT        K   Y  +++   + +   
Sbjct: 19  IRFVVFMQGCPL-----------RCLYCHNVDT---WELKDKNYIYTPEEILAELNKVRA 64

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
                      +GGEPL Q    + L +   + G   A++T+G
Sbjct: 65  FLTGG---ITASGGEPLFQASFILELFKLCKENGIHTALDTSG 104


>gi|118579622|ref|YP_900872.1| radical SAM domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118502332|gb|ABK98814.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379]
          Length = 332

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL              + DT             ++D     ++E             +T
Sbjct: 38  CNLACSGCGRIRE----YADTMQ--------EMMSLDDCLKSVDE------CPAPVVTIT 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPLL   +  LIQ    RG  I + TNG +   + +D +   P    ++ + G +E
Sbjct: 80  GGEPLLYPQINELIQGTLDRGKHIYLCTNG-LLLEKALDSMKPHPNFTFNIHMDGLEE 136


>gi|237742524|ref|ZP_04573005.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 4_1_13]
 gi|256845861|ref|ZP_05551319.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp.
           3_1_36A2]
 gi|294784957|ref|ZP_06750245.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp.
           3_1_27]
 gi|229430172|gb|EEO40384.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 4_1_13]
 gi|256719420|gb|EEU32975.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp.
           3_1_36A2]
 gi|294486671|gb|EFG34033.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp.
           3_1_27]
          Length = 243

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 26/103 (25%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C +C   DT        K   Y  +++   + +   
Sbjct: 19  IRFVVFMQGCPL-----------RCLYCHNVDT---WELKDKNYIYTPEEILAELNKVKA 64

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
                      +GGEPL Q    + L +   + G   A++T+G
Sbjct: 65  FLTGG---ITASGGEPLFQASFILELFKLCKENGIHTALDTSG 104


>gi|52144799|ref|YP_082030.1| formate acetyltransferase activating enzyme (pyruvate formate-lyase
           activating enzyme) [Bacillus cereus E33L]
 gi|196040151|ref|ZP_03107453.1| pyruvate formate-lyase 1-activating enzyme [Bacillus cereus
           NVH0597-99]
 gi|225862489|ref|YP_002747867.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus 03BB102]
 gi|51978268|gb|AAU19818.1| formate acetyltransferase activating enzyme (pyruvate formate-lyase
           activating enzyme) [Bacillus cereus E33L]
 gi|196029006|gb|EDX67611.1| pyruvate formate-lyase 1-activating enzyme [Bacillus cereus
           NVH0597-99]
 gi|225788466|gb|ACO28683.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus 03BB102]
          Length = 243

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSG 107


>gi|219855994|ref|YP_002473116.1| hypothetical protein CKR_2651 [Clostridium kluyveri NBRC 12016]
 gi|219569718|dbj|BAH07702.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 311

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 10/111 (9%)

Query: 30  SGCNLWSGREQDRLSAQ-----CRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWITGE 82
             C    G   ++   +     C  C T+       K     YN +Q+  +IE+Q I   
Sbjct: 75  QVCPYGVGINLNQRLEREKCKSCGLC-TEVCTTNSRKNLIYHYNSEQILKIIEKQRIFYR 133

Query: 83  KEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
             G     +GGE  LQ D+   L+  L  +  ++A+ET+G  +  +  D +
Sbjct: 134 YSGGGVTFSGGEATLQTDILRELVNKLYDKAIDLAIETSGHFQFDKVKDIL 184


>gi|124027741|ref|YP_001013061.1| Fe-S oxidoreductase [Hyperthermus butylicus DSM 5456]
 gi|123978435|gb|ABM80716.1| predicted Fe-S oxidoreductase [Hyperthermus butylicus DSM 5456]
          Length = 250

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 16/93 (17%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL           +C FC +       T G      +    +    I   +  R   L
Sbjct: 46  GCNL-----------RCVFCWSGRARDDPTIGFWVTAHEAYRRLR--GIARSRGYRIVRL 92

Query: 91  TGGEPLL--QVDVPLIQAL-NKRGFEIAVETNG 120
           +GGEP +       L+     +RG    +ETNG
Sbjct: 93  SGGEPTIGWSHLTELLDYFSRERGLIFVLETNG 125


>gi|47567277|ref|ZP_00237991.1| formate enzyme [Bacillus cereus G9241]
 gi|229154216|ref|ZP_04282337.1| hypothetical protein bcere0010_4160 [Bacillus cereus ATCC 4342]
 gi|47556120|gb|EAL14457.1| formate enzyme [Bacillus cereus G9241]
 gi|228629230|gb|EEK85936.1| hypothetical protein bcere0010_4160 [Bacillus cereus ATCC 4342]
          Length = 243

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSG 107


>gi|325576615|ref|ZP_08147333.1| [formate-C-acetyltransferase]-activating enzyme [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325161178|gb|EGC73293.1| [formate-C-acetyltransferase]-activating enzyme [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 262

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 21/135 (15%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
           F  ++G+G      ++F    GC L            C +C       +  +G       
Sbjct: 17  FSNVEGQGNRT---SIF--LQGCKL-----------NCLYCHNPETIPRYAEGAHQVS-- 58

Query: 70  LADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQG 127
               + EQ +      R   ++GGEP +     VPL Q L + G    ++++G  E    
Sbjct: 59  -LQYLYEQAMDAVPFIRGVTVSGGEPTIHHKKLVPLFQKLREEGLTCYLDSSGFFEFDAI 117

Query: 128 IDWICVSPKAGCDLK 142
              I V+ K   DLK
Sbjct: 118 RPLIDVTDKFLFDLK 132


>gi|229089571|ref|ZP_04220838.1| hypothetical protein bcere0021_4180 [Bacillus cereus Rock3-42]
 gi|300119070|ref|ZP_07056781.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus SJ1]
 gi|228693787|gb|EEL47483.1| hypothetical protein bcere0021_4180 [Bacillus cereus Rock3-42]
 gi|298723686|gb|EFI64417.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus SJ1]
 gi|324324548|gb|ADY19808.1| pyruvate formate-lyase-activating enzyme [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 243

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSG 107


>gi|257063874|ref|YP_003143546.1| predicted Fe-S oxidoreductase [Slackia heliotrinireducens DSM
           20476]
 gi|256791527|gb|ACV22197.1| predicted Fe-S oxidoreductase [Slackia heliotrinireducens DSM
           20476]
          Length = 397

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 18/97 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   + G    +      D+   +I++            + +
Sbjct: 51  CNL-----------KCVHC---YAGSDAQRYDELTTDEAKTMIDDL---AAFGCPVLLFS 93

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127
           GGEP ++ D+  L+    ++G  + + TNGT+  P+ 
Sbjct: 94  GGEPTIRPDLVELMGYAKQKGMRVVISTNGTLITPEK 130


>gi|193216092|ref|YP_001997291.1| radical SAM domain-containing protein [Chloroherpeton thalassium
           ATCC 35110]
 gi|193089569|gb|ACF14844.1| Radical SAM domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 343

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 12/89 (13%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN +      R +A+C+FCD   +  + +         L D+ +          ++   T
Sbjct: 5   CNYYLTY---RCNAECKFCD---IWKKPSIYA-----SLPDIQQNLTDLKRLGVQFVDFT 53

Query: 92  GGEPLLQVDVPLIQAL-NKRGFEIAVETN 119
           GGEPLL  D+P I +   + GF  ++ TN
Sbjct: 54  GGEPLLHKDLPEILSFAKQLGFFTSITTN 82


>gi|170290138|ref|YP_001736954.1| glycyl-radical activating family protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174218|gb|ACB07271.1| glycyl-radical enzyme activating protein family [Candidatus
           Korarchaeum cryptofilum OPF8]
          Length = 299

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119
           G  Y+V+++ + I +     +  G     TGGEP  Q      L++A    G    VET+
Sbjct: 103 GREYSVEEVMEEIRKDVTFFDSSGGGVTFTGGEPFFQPLFLKGLLEACKAEGIHTVVETS 162

Query: 120 G 120
           G
Sbjct: 163 G 163


>gi|297569103|ref|YP_003690447.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296925018|gb|ADH85828.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 347

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104
           +C +C   + G         ++ ++  +I++    G +  +  VL GGEPLL  ++  +I
Sbjct: 40  RCIYC---YAGSGLPLADELSLAEIKQVIDQAAELGAR--KIIVLGGGEPLLYPEIFTVI 94

Query: 105 QALNKRGFEIAVETNGTIEPPQ 126
             +  +G +  + TNGT+  P+
Sbjct: 95  DYIRGKGLQADIFTNGTLITPE 116


>gi|45358143|ref|NP_987700.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanococcus maripaludis S2]
 gi|44920900|emb|CAF30136.1| Radical-activating enzyme [Methanococcus maripaludis S2]
          Length = 268

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 58/172 (33%), Gaps = 45/172 (26%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF   SGCN+  G  Q+                  T       +++ + ++  +      
Sbjct: 54  VF--LSGCNMKCGYCQNYEYI-------------TTNISEMTAEEVFNSMDLMFAEA--- 95

Query: 85  GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
               V++GGEP LQ +  + L +    +GF + ++TNGT       D +          K
Sbjct: 96  ---LVISGGEPTLQPEAVLELAKIAKGKGFPVKLDTNGTNP-----DLV---------EK 138

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
           +     L  +   V     NY      +          ++EN    I  C +
Sbjct: 139 LISNNLLNYIAIDVKAGFNNYEKITGYK--------KEIKENILKIIDLCKK 182


>gi|229194825|ref|ZP_04321612.1| hypothetical protein bcere0001_4080 [Bacillus cereus m1293]
 gi|228588673|gb|EEK46704.1| hypothetical protein bcere0001_4080 [Bacillus cereus m1293]
          Length = 243

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSG 107


>gi|300855773|ref|YP_003780757.1| pyruvate formate-lyase activating enzyme [Clostridium ljungdahlii
           DSM 13528]
 gi|300435888|gb|ADK15655.1| pyruvate formate-lyase activating enzyme [Clostridium ljungdahlii
           DSM 13528]
          Length = 303

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119
           Y V++L  L+ +     +  G    L+GGEPL Q D    L++ L + G   A+ET+
Sbjct: 105 YTVEELVKLVLKDKAFFKYGGG-VTLSGGEPLFQKDFAISLLKMLKENGIHTAIETS 160


>gi|228989633|ref|ZP_04149617.1| hypothetical protein bpmyx0001_4050 [Bacillus pseudomycoides DSM
           12442]
 gi|228995821|ref|ZP_04155480.1| hypothetical protein bmyco0003_4180 [Bacillus mycoides Rock3-17]
 gi|229003440|ref|ZP_04161260.1| hypothetical protein bmyco0002_4150 [Bacillus mycoides Rock1-4]
 gi|228757818|gb|EEM07043.1| hypothetical protein bmyco0002_4150 [Bacillus mycoides Rock1-4]
 gi|228763901|gb|EEM12789.1| hypothetical protein bmyco0003_4180 [Bacillus mycoides Rock3-17]
 gi|228770170|gb|EEM18750.1| hypothetical protein bpmyx0001_4050 [Bacillus pseudomycoides DSM
           12442]
          Length = 243

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSG 107


>gi|124486075|ref|YP_001030691.1| GTP cyclohydrolase subunit MoaA [Methanocorpusculum labreanum Z]
 gi|124363616|gb|ABN07424.1| GTP cyclohydrolase subunit MoaA [Methanocorpusculum labreanum Z]
          Length = 319

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 28/142 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           C+L       R       C       +     +   +++++LI    +  E   +   LT
Sbjct: 30  CDLRCIYCH-REGEGDNGC------TRDDHASQMTKEEISELI---GVFAELGVKTIKLT 79

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVE----TNGTIEP-------PQGIDWICVS---PKA 137
           GGEPLL+ D  L+  +  R     +E    TNGT            G+  + VS      
Sbjct: 80  GGEPLLRPD--LLDII--RSIPPHIESSLTTNGTHLAKLAKELKDAGLSRVNVSLDTMNR 135

Query: 138 GCDLKIKGGQELKLVFPQVNVS 159
              +KI G   LK V   ++ +
Sbjct: 136 DTYIKITGKDRLKDVLDGIDAA 157


>gi|307699833|ref|ZP_07636884.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Mobiluncus mulieris FB024-16]
 gi|307614871|gb|EFN94089.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Mobiluncus mulieris FB024-16]
          Length = 278

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 28/127 (22%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G++A  VF    GC              C +C  +F  I      +    +L  L+E + 
Sbjct: 21  GKLAAVVF--LQGCP-----------WNCGYC-QNFAIIDPKAPAQVPESELWSLLERRA 66

Query: 79  ITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-------PPQGIDW 130
              +      V +GGEP  Q   +   +   + GF++ + T G              +DW
Sbjct: 67  GLLDG----VVFSGGEPTRQPALLEAARRAKQLGFQVGLHTGGAYPRRLAALLAQNLVDW 122

Query: 131 ICVSPKA 137
           I +  KA
Sbjct: 123 IGLDIKA 129


>gi|306817627|ref|ZP_07451370.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Mobiluncus mulieris ATCC 35239]
 gi|304649669|gb|EFM46951.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Mobiluncus mulieris ATCC 35239]
          Length = 278

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 28/127 (22%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G++A  VF    GC              C +C  +F  I      +    +L  L+E + 
Sbjct: 21  GKLAAVVF--LQGCP-----------WNCGYC-QNFAIIDPKAPAQVPESELWSLLERRA 66

Query: 79  ITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-------PPQGIDW 130
              +      V +GGEP  Q   +   +   + GF++ + T G              +DW
Sbjct: 67  GLLDG----VVFSGGEPTRQPALLEAARRAKQLGFQVGLHTGGAYPRRLAALLAQNLVDW 122

Query: 131 ICVSPKA 137
           I +  KA
Sbjct: 123 IGLDIKA 129


>gi|227876678|ref|ZP_03994787.1| pyruvate radical-activating enzyme [Mobiluncus mulieris ATCC 35243]
 gi|269976206|ref|ZP_06183202.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Mobiluncus mulieris 28-1]
 gi|227842575|gb|EEJ52775.1| pyruvate radical-activating enzyme [Mobiluncus mulieris ATCC 35243]
 gi|269935535|gb|EEZ92073.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Mobiluncus mulieris 28-1]
          Length = 278

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 28/127 (22%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G++A  VF    GC              C +C  +F  I      +    +L  L+E + 
Sbjct: 21  GKLAAVVF--LQGCP-----------WNCGYC-QNFAIIDPKAPAQVPESELWSLLERRA 66

Query: 79  ITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-------PPQGIDW 130
              +      V +GGEP  Q   +   +   + GF++ + T G              +DW
Sbjct: 67  GLLDG----VVFSGGEPTRQPALLEAARRAKQLGFQVGLHTGGAYPRRLAALLAQNLVDW 122

Query: 131 ICVSPKA 137
           I +  KA
Sbjct: 123 IGLDIKA 129


>gi|197304077|ref|ZP_03169102.1| hypothetical protein RUMLAC_02814 [Ruminococcus lactaris ATCC
           29176]
 gi|197296849|gb|EDY31424.1| hypothetical protein RUMLAC_02814 [Ruminococcus lactaris ATCC
           29176]
          Length = 249

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 28/122 (22%)

Query: 7   KEIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        +F   +GC +           +C+FC   DT     +   G
Sbjct: 11  TESFGSVDGPGVRFI----IFV--NGCPM-----------RCQFCHNPDT----WKMQDG 49

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
                D+L           +KEG    ++GGEPL+Q+D  + L +     G    ++T G
Sbjct: 50  EERTTDELLKTALRYRSYWKKEGG-ITVSGGEPLMQMDFMIDLFKKAKAEGVHTNIDTCG 108

Query: 121 TI 122
            +
Sbjct: 109 AV 110


>gi|148263090|ref|YP_001229796.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146396590|gb|ABQ25223.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 332

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL              + DT             ++++    ++E             +T
Sbjct: 38  CNLACSGCGRIRE----YADTIQ--------DMMSLEECLASVDE------CPAPVVTIT 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEP L   +  LI+A+ +RG  I + TN  +   + +D +   P    ++ + G +E
Sbjct: 80  GGEPFLYPHIFELIEAVLERGKHIYLCTN-ALLLEKALDNMRPHPNFTLNIHMDGMEE 136


>gi|116754318|ref|YP_843436.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanosaeta thermophila PT]
 gi|116665769|gb|ABK14796.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanosaeta thermophila PT]
          Length = 247

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 35/116 (30%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           GR++  VF R  GC             +C FC              +   ++++LI   +
Sbjct: 18  GRLSAVVFLR--GCPF-----------RCPFC------QNAELQSGWTPVEISELINHLF 58

Query: 79  I------------TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
                        +G       VL+GGEPL Q D  V + + ++ RG ++ +ETNG
Sbjct: 59  PRRGAGQSILHEFSGSVCIDSVVLSGGEPLAQSDAVVAIAREVDVRGLDLGIETNG 114


>gi|34763796|ref|ZP_00144710.1| Pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27886434|gb|EAA23695.1| Pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 243

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 26/103 (25%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C +C   DT        K   Y  +++   + +   
Sbjct: 19  IRFVVFMQGCPL-----------RCLYCHNVDT---WELKDKNYIYTPEEILAELNKVKA 64

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
                      +GGEPL Q    + L +   + G   A++T+G
Sbjct: 65  FLTGG---ITASGGEPLFQASFILELFKLCKENGIHTALDTSG 104


>gi|331092439|ref|ZP_08341264.1| hypothetical protein HMPREF9477_01907 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401282|gb|EGG80871.1| hypothetical protein HMPREF9477_01907 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 303

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 73/173 (42%), Gaps = 19/173 (10%)

Query: 39  EQDRLSAQCRFCDT--DFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           +Q     +C+ C T  D+      +  G +Y + +L   +++ ++  E+      L+GGE
Sbjct: 76  KQCTDRTKCKVCSTCLDYCVNNAREVVGKQYTIAELVKEVDKDYMFYEESFGGVTLSGGE 135

Query: 95  PLLQVD---VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAG---CDLKIKGGQE 148
            + Q       L++ L ++G+ I ++T G    P+    I + P       D+K+   ++
Sbjct: 136 VMAQDMEYIEELLKKLKRKGYNITIDTCG--FAPEENFQIVL-PYVDTFLYDIKLMDNEK 192

Query: 149 LKLVFPQVN---VSPENYIGFDFERFSL-QPMDG--PFLEENTNLAISYCFQN 195
            K    Q N    +   Y+  +  R  +  P+ G     +E     ISY  +N
Sbjct: 193 HKKYMGQSNELIFTNLKYLSDNGARIYIRIPVIGGVNDSDEEIQAIISYLKEN 245


>gi|317484368|ref|ZP_07943287.1| glycyl-radical enzyme activating family protein [Bilophila
           wadsworthia 3_1_6]
 gi|316924376|gb|EFV45543.1| glycyl-radical enzyme activating family protein [Bilophila
           wadsworthia 3_1_6]
          Length = 312

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 8/99 (8%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTK------GGRYNVDQLADLIEEQWITGEKEGRY 87
           +           +C  C T               G    VDQ+   +E+  +   + G  
Sbjct: 79  VNEDGTLSLDRGKCDVCKTLDCAHACPAQGMIIYGENKTVDQILKEVEKDALFYARSGGG 138

Query: 88  CVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
             L+GGEPL+  D  +PL++    R  + A+ET G I  
Sbjct: 139 MTLSGGEPLMHADIALPLLREARHRRIKTAIETCGCIPW 177


>gi|317472003|ref|ZP_07931335.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Anaerostipes sp. 3_2_56FAA]
 gi|316900407|gb|EFV22389.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Anaerostipes sp. 3_2_56FAA]
          Length = 158

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 20/102 (19%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
            VF    GCN +           C FC + + +  +  + G    D LA L + + I   
Sbjct: 21  TVF--TGGCNFF-----------CPFCHNAELISPRKEEPGLLEKDLLAFLRKRRGILDG 67

Query: 83  KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
                  ++GGEPLL   +  LI+ + + G+ + ++TNG+  
Sbjct: 68  -----VCISGGEPLLHTGLSGLIREMKELGYLVKLDTNGSFP 104


>gi|301052164|ref|YP_003790375.1| formate acetyltransferase activating enzyme [Bacillus anthracis CI]
 gi|300374333|gb|ADK03237.1| formate acetyltransferase activating enzyme [Bacillus cereus biovar
           anthracis str. CI]
          Length = 243

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSG 107


>gi|42779644|ref|NP_976891.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus ATCC
           10987]
 gi|206974358|ref|ZP_03235275.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus H3081.97]
 gi|217958047|ref|YP_002336591.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus AH187]
 gi|222094245|ref|YP_002528302.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus Q1]
 gi|229137313|ref|ZP_04265928.1| hypothetical protein bcere0013_4470 [Bacillus cereus BDRD-ST26]
 gi|42735561|gb|AAS39499.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus ATCC
           10987]
 gi|206747598|gb|EDZ58988.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus H3081.97]
 gi|217063225|gb|ACJ77475.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus AH187]
 gi|221238300|gb|ACM11010.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus Q1]
 gi|228646132|gb|EEL02351.1| hypothetical protein bcere0013_4470 [Bacillus cereus BDRD-ST26]
          Length = 243

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSG 107


>gi|30260669|ref|NP_843046.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           Ames]
 gi|47525780|ref|YP_017129.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49183510|ref|YP_026762.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           Sterne]
 gi|65317928|ref|ZP_00390887.1| COG1180: Pyruvate-formate lyase-activating enzyme [Bacillus
           anthracis str. A2012]
 gi|165870717|ref|ZP_02215370.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0488]
 gi|167634817|ref|ZP_02393136.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0442]
 gi|167640786|ref|ZP_02399045.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0193]
 gi|170688631|ref|ZP_02879837.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0465]
 gi|170707180|ref|ZP_02897636.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0389]
 gi|177655125|ref|ZP_02936755.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0174]
 gi|190568214|ref|ZP_03021123.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034574|ref|ZP_03101982.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus W]
 gi|218901649|ref|YP_002449483.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus AH820]
 gi|227816618|ref|YP_002816627.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           CDC 684]
 gi|228913196|ref|ZP_04076835.1| hypothetical protein bthur0012_4400 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228925699|ref|ZP_04088786.1| hypothetical protein bthur0010_4250 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931938|ref|ZP_04094832.1| hypothetical protein bthur0009_4230 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944262|ref|ZP_04106638.1| hypothetical protein bthur0007_4370 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229120107|ref|ZP_04249359.1| hypothetical protein bcere0016_4240 [Bacillus cereus 95/8201]
 gi|229601335|ref|YP_002865113.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0248]
 gi|254686898|ref|ZP_05150756.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           CNEVA-9066]
 gi|254725978|ref|ZP_05187760.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A1055]
 gi|254738875|ref|ZP_05196577.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           Western North America USA6153]
 gi|254743741|ref|ZP_05201426.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           Kruger B]
 gi|254756280|ref|ZP_05208309.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           Vollum]
 gi|254762099|ref|ZP_05213948.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           Australia 94]
 gi|30254037|gb|AAP24532.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           Ames]
 gi|47500928|gb|AAT29604.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49177437|gb|AAT52813.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           Sterne]
 gi|164713551|gb|EDR19075.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0488]
 gi|167511180|gb|EDR86567.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0193]
 gi|167529891|gb|EDR92639.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0442]
 gi|170127958|gb|EDS96829.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0389]
 gi|170667491|gb|EDT18248.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0465]
 gi|172080274|gb|EDT65364.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0174]
 gi|190560706|gb|EDV14682.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis
           Tsiankovskii-I]
 gi|195992617|gb|EDX56577.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus W]
 gi|218536292|gb|ACK88690.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus AH820]
 gi|227003394|gb|ACP13137.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           CDC 684]
 gi|228663345|gb|EEL18933.1| hypothetical protein bcere0016_4240 [Bacillus cereus 95/8201]
 gi|228815413|gb|EEM61658.1| hypothetical protein bthur0007_4370 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827723|gb|EEM73463.1| hypothetical protein bthur0009_4230 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228833974|gb|EEM79524.1| hypothetical protein bthur0010_4250 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228846601|gb|EEM91614.1| hypothetical protein bthur0012_4400 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229265743|gb|ACQ47380.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0248]
          Length = 243

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSG 107


>gi|242280225|ref|YP_002992354.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Desulfovibrio salexigens DSM 2638]
 gi|242123119|gb|ACS80815.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Desulfovibrio salexigens DSM 2638]
          Length = 338

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 22/127 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C+ C             R +V +  D +EE             + 
Sbjct: 38  CNL-----------RCKGCG-KVNQPPEILNKRLSVQECIDAVEECG------APIVSIP 79

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL- 149
           GGEPLL  ++P ++  L KR   + + TNG I  P+ I     SP    +L + G  E+ 
Sbjct: 80  GGEPLLHPEIPTIVSELIKRKKFVYLCTNG-ILMPERIHEFKPSPYLTFNLHLDGPAEVH 138

Query: 150 -KLVFPQ 155
            K+V  Q
Sbjct: 139 DKVVCKQ 145


>gi|227498357|ref|ZP_03928507.1| glycerol dehydratase activator [Acidaminococcus sp. D21]
 gi|226903819|gb|EEH89737.1| glycerol dehydratase activator [Acidaminococcus sp. D21]
          Length = 258

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 25/111 (22%)

Query: 21  GRVAV-FCRFSGCNLWSGREQDRLSAQCRFCDTDF-------VGIQGTK--GGRYNVDQL 70
           G   V F    GC L           +C++C T           + G+K  G    V  +
Sbjct: 23  GMRTVVF--LKGCPL-----------RCQWCSTPESQAFQVETTVDGSKSYGTEMTVTDV 69

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
              + +        G    L+GGE L Q D  + L++A +  G   AVET+
Sbjct: 70  MKEVRKDTAFYFISGGGMTLSGGELLAQPDFSLALLKAASMEGISTAVETS 120


>gi|257887678|ref|ZP_05667331.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,141,733]
 gi|257823732|gb|EEV50664.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,141,733]
          Length = 253

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 31/127 (24%)

Query: 8   EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F ++ G G        VF    GC             +C+FC   DT  +G     G 
Sbjct: 13  ETFGSVDGPGLRFV----VFM--QGC-----------RMRCQFCHNPDTWNIG----GGK 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG- 120
            Y+ D+L D  E        +     ++GGEPLLQ+D  + L +   +R     ++T G 
Sbjct: 52  EYSADELLDKAERFRPY-WGDKGGITVSGGEPLLQIDFLIELFKKAKEREMHTTLDTCGK 110

Query: 121 --TIEPP 125
             T E P
Sbjct: 111 PFTYEDP 117


>gi|187776866|ref|ZP_02993339.1| hypothetical protein CLOSPO_00405 [Clostridium sporogenes ATCC
           15579]
 gi|187775525|gb|EDU39327.1| hypothetical protein CLOSPO_00405 [Clostridium sporogenes ATCC
           15579]
          Length = 232

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 25/102 (24%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G   + D++   +       
Sbjct: 22  VF--FQGC-----------QLRCIYCHNPDT----WDLNAGIEISSDEILKKVLRYKPY- 63

Query: 82  EKEGRYCVLTGGEPLLQVDVPLIQALNK---RGFEIAVETNG 120
            K+      +GGEPL+Q +  L++ L K   +G   A++T+G
Sbjct: 64  FKQVGGITCSGGEPLMQPEF-LLEILKKSKNQGIHTALDTSG 104


>gi|253699518|ref|YP_003020707.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Geobacter sp. M21]
 gi|251774368|gb|ACT16949.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Geobacter sp. M21]
          Length = 332

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL              + DT             ++ Q  D ++E             +T
Sbjct: 38  CNLACSGCGRIRE----YADTIQ--------EMMSLKQCLDSVDE------CPAPVVTIT 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEP L   +  LI+ +  RG  I + TN  +   + +D +   P    ++ + G +E
Sbjct: 80  GGEPFLYPHIFQLIEKVLARGKHIYLCTN-ALLLEKALDSMTPHPNLVINVHMDGMEE 136


>gi|78777438|ref|YP_393753.1| putative radical-activating enzyme [Sulfurimonas denitrificans DSM
           1251]
 gi|78497978|gb|ABB44518.1| putative radical-activating enzyme [Sulfurimonas denitrificans DSM
           1251]
          Length = 193

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 21/136 (15%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
           +C +C   D  F      K G+Y+   + D ++    T        VL+GGE      VP
Sbjct: 2   RCDYCYNKDIVFA-----KDGKYSYKDILDFLK----TRVNLLEAVVLSGGEASSYNLVP 52

Query: 103 LIQALNKRGFEIAVETNGT--IEPPQGI-----DWICVSPKAGCD--LKIKGGQELKLVF 153
               + + GF+I ++TNGT  +   + I     D++ +  KA      +I    +     
Sbjct: 53  FCLKIKELGFKIKLDTNGTNFLHVEELIKLNLLDYVALDYKAPMAKFTQITHSNKFDEFS 112

Query: 154 PQVNVSPENYIGFDFE 169
             ++   E  I F+  
Sbjct: 113 KTLDFLIEQNIDFEAR 128


>gi|145591814|ref|YP_001153816.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145283582|gb|ABP51164.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 254

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 55/145 (37%), Gaps = 18/145 (12%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL  G      +       T FV    + G      ++A+ +    I   +  R   +
Sbjct: 46  GCNLRCGMCWAWRN-------TSFVL---SSGEWLAPAEVAERLR--GIAERRGFRQVRV 93

Query: 91  TGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           +GGEPL+     L  I +  K  +   VETNG +        +   P A   + IKG   
Sbjct: 94  SGGEPLIAPVHLLQVIDSFAK--YTFIVETNGLLIDKALAKELAARPHAVVRVSIKGATA 151

Query: 149 LKLVFPQVNVSPENYIGFDFERFSL 173
            + V  ++ +SP  Y     E   L
Sbjct: 152 EEFV--KITMSPPQYFYKQLEALRL 174


>gi|269960975|ref|ZP_06175344.1| pyruvate formate-lyase 1 activating enzyme [Vibrio harveyi 1DA3]
 gi|269834194|gb|EEZ88284.1| pyruvate formate-lyase 1 activating enzyme [Vibrio harveyi 1DA3]
          Length = 246

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 52/165 (31%), Gaps = 36/165 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT         G    V+++    +      
Sbjct: 25  VF--LQGC-----------LMRCKYCHNRDT----WDTHDGKEVTVEEIIAEAKTYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWICVS 134
              G     +GGE +LQ +      +A    G    ++TNG     T    + +D     
Sbjct: 68  NASGGGVTCSGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRKHTDVIDEVLD----- 122

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
                DL +   + +K    Q  +   N    DF R  L  +   
Sbjct: 123 ---ATDLVMLDLKHMKDEIHQDFIGVSNRRVLDFAR-YLHKIGQK 163


>gi|288961972|ref|YP_003452282.1| pyruvate formate lyase activating enzyme [Azospirillum sp. B510]
 gi|288914252|dbj|BAI75738.1| pyruvate formate lyase activating enzyme [Azospirillum sp. B510]
          Length = 272

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 20/96 (20%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           SGC L           +C +C   DT  +      G R    ++ + I       ++   
Sbjct: 57  SGCPL-----------RCLYCHNPDTQHMH----DGTRTTSTEILEDIALYAEFLKRAHG 101

Query: 87  YCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
              L+GGEPL+Q +    +++     G   A++T+G
Sbjct: 102 GLTLSGGEPLVQPEFTAAILRGAKALGLHTALDTSG 137


>gi|152974265|ref|YP_001373782.1| pyruvate formate-lyase activating enzyme [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023017|gb|ABS20787.1| pyruvate formate-lyase activating enzyme [Bacillus cytotoxicus NVH
           391-98]
          Length = 243

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    VD++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVDEIMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E       ++GGEPLLQ+D  + L +   + G    ++++G
Sbjct: 67  EASEGGITVSGGEPLLQLDFLIELFKKCKEVGIHTTIDSSG 107


>gi|320102928|ref|YP_004178519.1| pyruvate formate-lyase activating enzyme [Isosphaera pallida ATCC
           43644]
 gi|319750210|gb|ADV61970.1| pyruvate formate-lyase activating enzyme [Isosphaera pallida ATCC
           43644]
          Length = 273

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 22/102 (21%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           A+F   SGC             +C++C   DT         G    V+++ D +      
Sbjct: 54  AIF--LSGC-----------LLRCQYCHNPDT----WAPRNGRLVEVEEVIDRLRPYLRM 96

Query: 81  GEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120
                    L+GGEPL Q        +A    G   A++T+G
Sbjct: 97  MSLGHGGVTLSGGEPLYQDRFAFEIFKACRGLGLHTALDTSG 138


>gi|282895351|ref|ZP_06303552.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Raphidiopsis brookii D9]
 gi|281199602|gb|EFA74463.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Raphidiopsis brookii D9]
          Length = 262

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C +C   DT         G    V +L   IE+   
Sbjct: 40  IRFVIFTQGC-----------LLRCLYCHNPDTR----DTKTGKEITVGELVTEIEKYRS 84

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
             E       ++GGEPLLQ +    + +   +     A++T+G
Sbjct: 85  YMEFTSGGVTISGGEPLLQPEFVREVFRQCQELNIHTALDTSG 127


>gi|257898809|ref|ZP_05678462.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           Com15]
 gi|293570288|ref|ZP_06681357.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E980]
 gi|257836721|gb|EEV61795.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           Com15]
 gi|291609695|gb|EFF38956.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E980]
          Length = 253

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 28/119 (23%)

Query: 8   EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F ++ G G        VF    GC             +C+FC   DT  +G     G 
Sbjct: 13  ETFGSVDGPGLRFV----VFM--QGC-----------RMRCQFCHNPDTWNIG----GGK 51

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
            Y+ D+L D  E        +     ++GGEPLLQ+D  + L +   +R     ++T G
Sbjct: 52  EYSADELLDKAERFRPY-WGDKGGITVSGGEPLLQIDFLIELFKKAKEREMHTTLDTCG 109


>gi|1684728|emb|CAA98151.1| NirJ protein [Pseudomonas stutzeri]
          Length = 393

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            +       R +  C+ C               +  +   +I++    G    R  +L+G
Sbjct: 30  PVVIWNLLRRCNLTCKHC--YATSADSEFRDELDTAEALKVIDDLHEAG---VRVLILSG 84

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           GEPLL+ D+  L      +GF +A+ TNGT+     I+ I
Sbjct: 85  GEPLLRADIFQLADYARDKGFFVALSTNGTLIDESNIERI 124


>gi|229074375|ref|ZP_04207412.1| hypothetical protein bcere0024_4050 [Bacillus cereus Rock4-18]
 gi|229095162|ref|ZP_04226155.1| hypothetical protein bcere0020_4190 [Bacillus cereus Rock3-29]
 gi|229114104|ref|ZP_04243529.1| hypothetical protein bcere0017_4090 [Bacillus cereus Rock1-3]
 gi|228669374|gb|EEL24791.1| hypothetical protein bcere0017_4090 [Bacillus cereus Rock1-3]
 gi|228688243|gb|EEL42128.1| hypothetical protein bcere0020_4190 [Bacillus cereus Rock3-29]
 gi|228708737|gb|EEL60873.1| hypothetical protein bcere0024_4050 [Bacillus cereus Rock4-18]
          Length = 243

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKEVGIHTTIDSSG 107


>gi|242278011|ref|YP_002990140.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242120905|gb|ACS78601.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 343

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-P 102
             +C +C   +           + +++ D +++    G +  +  +L GGEP+L   +  
Sbjct: 37  DLRCIYC---YASSGEKLNNELDFEEITDAVDQCRDLGAR--KIIILGGGEPMLYPRIMD 91

Query: 103 LIQALNKRGFEIAVETNGTIEPPQ 126
           +I+ +++ G EI + +NGT   P+
Sbjct: 92  VIRYIHELGLEIELFSNGTRITPE 115


>gi|303328530|ref|ZP_07358966.1| radical SAM domain protein [Desulfovibrio sp. 3_1_syn3]
 gi|302861361|gb|EFL84299.1| radical SAM domain protein [Desulfovibrio sp. 3_1_syn3]
          Length = 480

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 14/104 (13%)

Query: 31  GCNLWSGREQDRLSAQCRF-------CDTD----FVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G         C         CD      + G   T+G       LA L  +   
Sbjct: 93  GCPFDCGLCPLHAQHTCTGLVEVTMRCDLACPVCYAGAGKTEGTLPPDPPLAALAAQLDS 152

Query: 80  T-GEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGFE-IAVETNG 120
                      ++GGEP ++ D+P I  L  +RGF  + + TNG
Sbjct: 153 LKAASGACNVQISGGEPTIREDLPAIVTLARERGFGLVQLNTNG 196


>gi|168334966|ref|ZP_02693084.1| putative pyruvate formate-lyase 3 activating enzyme [Epulopiscium
           sp. 'N.t. morphotype B']
          Length = 300

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 11/111 (9%)

Query: 46  QCRFCDTDFVGIQG--TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP- 102
           +C+ C T           G    + ++   + +  +  +  G    ++GGE L+QV    
Sbjct: 87  RCKKC-TTVCLTDACYFSGESIAIAEIVKEVCKDKLYYDSSGGGVTISGGEALMQVKAVN 145

Query: 103 -LIQALNKRGFEIAVETNGTI------EPPQGIDWICVSPKAGCDLKIKGG 146
            LI  L K G ++A+ET G +         + +D +    K     K +  
Sbjct: 146 VLIDKLKKEGIDVAIETCGAVKAAVLRAIVEKVDLVMFDLKHIDKYKYEQA 196


>gi|78221808|ref|YP_383555.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78193063|gb|ABB30830.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 376

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 42  RLSAQCRFCD--TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           R +  C  CD  +      GT G   +  +L ++I E    G     +   TGGEPLL+ 
Sbjct: 55  RCNCDCTMCDIPSKRRESAGTGGDELDTARLKEIIGEFARLGTPGLGF---TGGEPLLRP 111

Query: 100 DV-PLIQALNKRGFEIAVETNG 120
           D+  L+      G    + TNG
Sbjct: 112 DIYELLACSRHNGMITHLNTNG 133


>gi|116754440|ref|YP_843558.1| radical SAM domain-containing protein [Methanosaeta thermophila PT]
 gi|116665891|gb|ABK14918.1| Radical SAM domain protein [Methanosaeta thermophila PT]
          Length = 325

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 18/104 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C           G   +  ++  LI+E    G       +++
Sbjct: 12  CNL-----------SCSYC--RASAGPAPSGDELSTGEIKGLIKEIAPMGA----MLIIS 54

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134
           GGEPLL Q    + +     G  +++ +NGT+  P+ +D I +S
Sbjct: 55  GGEPLLRQDVFEVARYAAGSGVRVSLASNGTLITPEIVDRILLS 98


>gi|20093627|ref|NP_613474.1| pyruvate-formate lyase-activating enzyme [Methanopyrus kandleri
           AV19]
 gi|19886493|gb|AAM01404.1| Pyruvate-formate lyase-activating enzyme [Methanopyrus kandleri
           AV19]
          Length = 219

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 22/120 (18%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
             GC L           +C +C           G + +V+ +   +E+  +  +      
Sbjct: 25  TQGCPL-----------RCPWCHNPETR-DPNGGKKADVETILRDVEKYAVYLDA----L 68

Query: 89  VLTGGEPLLQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144
           +++GGEPLLQ    L +AL +     G ++ ++T+G   P +    I    +   DLK  
Sbjct: 69  IVSGGEPLLQPCEEL-KALARGARGLGLKVVLDTSG-FPPDRLGKVISSFDRVALDLKAP 126


>gi|301155416|emb|CBW14882.1| unnamed protein product [Haemophilus parainfluenzae T3T1]
          Length = 262

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 21/135 (15%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
           F  ++G+G      ++F    GC L      +  +         +         +Y  +Q
Sbjct: 17  FSNVEGQGNRT---SIF--LQGCKLNCLYCHNPETIP------RYAEGAHQVSLQYLYEQ 65

Query: 70  LADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQG 127
           + D +           R   ++GGEP +     VPL Q L + G    ++++G  E    
Sbjct: 66  VMDAV--------PFIRGVTVSGGEPTIHHKKLVPLFQKLREEGLTCYLDSSGFFEFDAI 117

Query: 128 IDWICVSPKAGCDLK 142
              I V+ K   DLK
Sbjct: 118 RPLIEVTDKFLFDLK 132


>gi|171320975|ref|ZP_02909966.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
           MEX-5]
 gi|171093770|gb|EDT38910.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
           MEX-5]
          Length = 372

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 25/142 (17%)

Query: 41  DRLSAQCRFC---DT---DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           D+ + +C +C   D+   D+  +  +   R +  QL  +       G ++ R   LTGGE
Sbjct: 48  DQCNFRCGYCMPRDSFGPDYAFMPSS--ERLSFAQLEKIARAFISLGVEKIR---LTGGE 102

Query: 95  PLLQVDVP-LIQALN------KRGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ ++  LI+ L        +  EIA+ TNG++           G+  + VS  A  D
Sbjct: 103 PLLRRNLEALIERLATLTTIDGKPVEIALTTNGSLLAAKARTLRDAGLSRVTVSLDAIDD 162

Query: 141 LKIKGGQELKLVFPQVNVSPEN 162
           +  +   +  +   +V    E 
Sbjct: 163 VVFRRMSDADVPVARVLAGIEA 184


>gi|170759160|ref|YP_001788923.1| radical SAM domain-containing protein [Clostridium botulinum A3
           str. Loch Maree]
 gi|169406149|gb|ACA54560.1| radical SAM domain protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 278

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 63/175 (36%), Gaps = 38/175 (21%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDT--------------DF 54
           F ++ G G      A+F  F GCN       +  +   C+ C T              D 
Sbjct: 12  FSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYNAVEFLGDS 66

Query: 55  VGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           V     K               G R     + ++I+E   T         ++GGE  LQ 
Sbjct: 67  VKWDENKCRNCGICLEKCKNNCGPRNKYMSVGEIIKEILKTKPFISG-ITVSGGECTLQK 125

Query: 100 D--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
           D  + L + +   G  I V+TNG+++  +      +   A  D+K    +E K++
Sbjct: 126 DFLIDLFEKVKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMVDVKSFDNEEHKML 180


>gi|229171293|ref|ZP_04298882.1| hypothetical protein bcere0006_4220 [Bacillus cereus MM3]
 gi|228612187|gb|EEK69420.1| hypothetical protein bcere0006_4220 [Bacillus cereus MM3]
          Length = 243

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKEVGIHTTIDSSG 107


>gi|153813520|ref|ZP_01966188.1| hypothetical protein RUMOBE_03941 [Ruminococcus obeum ATCC 29174]
 gi|149830391|gb|EDM85483.1| hypothetical protein RUMOBE_03941 [Ruminococcus obeum ATCC 29174]
          Length = 235

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 18/102 (17%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
             +F     CN            +C FC    + +          +++   ++++    +
Sbjct: 24  ATIF--LGSCNF-----------RCPFCQNSSLVLHPADEPVIPEEEVLSFLKKRRGILD 70

Query: 83  KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
                  ++GGEP L  D+   I  ++  G+ + ++TNGT  
Sbjct: 71  G----VCISGGEPTLASDLEDFICKIHALGYPVKLDTNGTRP 108


>gi|167581236|ref|ZP_02374110.1| radical SAM domain protein [Burkholderia thailandensis TXDOH]
          Length = 239

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 26/128 (20%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G++A  VF    GC             +C +C    +  +         D L   +  + 
Sbjct: 26  GQLAAVVFV--QGCP-----------WRCGYCHNPHLQPRSRPAE-IEWDALLAFLARRV 71

Query: 79  ITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
              +      V +GGEP +       I  + + GF++ + + GT           +DWI 
Sbjct: 72  GLIDA----VVFSGGEPSIDPALAAAIDDVRRLGFKVGMHSAGTHPRRLSQLLPSLDWIG 127

Query: 133 VSPKAGCD 140
           +  KA  D
Sbjct: 128 LDVKAPFD 135


>gi|149191035|ref|ZP_01869296.1| pyruvate formate lyase activating enzyme 1 [Vibrio shilonii AK1]
 gi|148835169|gb|EDL52145.1| pyruvate formate lyase activating enzyme 1 [Vibrio shilonii AK1]
          Length = 246

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 52/165 (31%), Gaps = 36/165 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C +C   DT         G   +VD+L    +      
Sbjct: 25  VF--LQGC-----------LMRCMYCHNRDT----WDTHGGKEVSVDELIAEAKSYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWICVS 134
              G     +GGE +LQ +      +A    G    ++TNG     T    + +D     
Sbjct: 68  NASGGGITCSGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRKHTDVIDEVLD----- 122

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
                DL +   + +K    Q  +   N    DF R  L  +   
Sbjct: 123 ---ATDLVMLDIKHMKDEIHQDFIGVSNRRTLDFAR-YLHKIGQK 163


>gi|83720018|ref|YP_442340.1| radical SAM domain-containing protein [Burkholderia thailandensis
           E264]
 gi|167619323|ref|ZP_02387954.1| radical SAM domain protein [Burkholderia thailandensis Bt4]
 gi|257138539|ref|ZP_05586801.1| radical SAM domain-containing protein [Burkholderia thailandensis
           E264]
 gi|83653843|gb|ABC37906.1| radical SAM domain protein [Burkholderia thailandensis E264]
          Length = 239

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 26/128 (20%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G++A  VF    GC             +C +C    +  +         D L   +  + 
Sbjct: 26  GQLAAVVFV--QGCP-----------WRCGYCHNPHLQPRSRPAE-IEWDALLAFLARRV 71

Query: 79  ITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
              +      V +GGEP +       I  + + GF++ + + GT           +DWI 
Sbjct: 72  GLIDA----VVFSGGEPSIDPALAAAIDDVRRLGFKVGMHSAGTHPRRLSRLLPSLDWIG 127

Query: 133 VSPKAGCD 140
           +  KA  D
Sbjct: 128 LDVKAPFD 135


>gi|158522579|ref|YP_001530449.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfococcus oleovorans Hxd3]
 gi|158511405|gb|ABW68372.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfococcus oleovorans Hxd3]
          Length = 229

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 17/94 (18%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCN             C +C          +    +    AD                 +
Sbjct: 26  GCNY-----------HCPYC----HNPDLVRPKGPDFMSEADFFA-FLSERTHFLDGVSI 69

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
           TGGEP LQ D+      + + GF + ++TNG++ 
Sbjct: 70  TGGEPCLQPDLADFCAKIKEMGFLVKLDTNGSLP 103


>gi|157374846|ref|YP_001473446.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sediminis
           HAW-EB3]
 gi|157317220|gb|ABV36318.1| (Formate-C-acetyltransferase)-activating enzyme [Shewanella
           sediminis HAW-EB3]
          Length = 246

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 43/122 (35%), Gaps = 33/122 (27%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F T+ G G          RF     GC             +C++C   DT        
Sbjct: 11  ESFGTVDGPG---------IRFITFMQGC-----------LMRCQYCHNRDT----WDLH 46

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
            G    VD+L   I       E  G     +GGE +LQ +    L +A  K G    ++T
Sbjct: 47  GGREIEVDELMTQIISYRPFLEASGGGVTASGGEAILQAEFVSALFKACKKEGIHTCLDT 106

Query: 119 NG 120
           NG
Sbjct: 107 NG 108


>gi|306820990|ref|ZP_07454609.1| [formate-C-acetyltransferase]-activating enzyme [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304550931|gb|EFM38903.1| [formate-C-acetyltransferase]-activating enzyme [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 259

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 23/143 (16%)

Query: 4   YSIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
             +  I  F  ++G+G      ++F    GCN+      +             +G     
Sbjct: 9   LPVHRIIPFSNVEGQGNRT---SIF--LQGCNINCLYCHNPEM----------IGFSNDD 53

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
                ++ L D I+          R   ++GGE  +  D  V L + ++K G    ++TN
Sbjct: 54  THNMTIETLIDKIKNNMPF----IRGITMSGGEATIHSDKLVILFKEVHKLGLTCYIDTN 109

Query: 120 GTIEPPQGIDWICVSPKAGCDLK 142
           G  +  +  + +  + K   D+K
Sbjct: 110 GYFDIDEKKEMVEHTDKFLFDVK 132


>gi|290969108|ref|ZP_06560638.1| pyruvate formate-lyase 1-activating enzyme [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290780868|gb|EFD93466.1| pyruvate formate-lyase 1-activating enzyme [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 249

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 18/100 (18%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ--WITGE 82
           VF    GC             +CR+C       +G K   Y +   +D++ E   + T  
Sbjct: 27  VF--LQGC-----------RMRCRYCHNPETWQEG-KYSSYTLQYASDILREALRYRTYW 72

Query: 83  KEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
           K G    ++GGEPLLQ D    L     +RG    ++T G
Sbjct: 73  KNGGGITVSGGEPLLQPDFVRELFTLAKERGIHTVLDTAG 112


>gi|254974377|ref|ZP_05270849.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           QCD-66c26]
 gi|255091770|ref|ZP_05321248.1| pyruvate formate-lyase activating enzyme [Clostridium difficile CIP
           107932]
 gi|255099873|ref|ZP_05328850.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           QCD-63q42]
 gi|255305762|ref|ZP_05349934.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           ATCC 43255]
 gi|255313501|ref|ZP_05355084.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           QCD-76w55]
 gi|255516189|ref|ZP_05383865.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           QCD-97b34]
 gi|255649285|ref|ZP_05396187.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           QCD-37x79]
 gi|260682455|ref|YP_003213740.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           CD196]
 gi|260686054|ref|YP_003217187.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           R20291]
 gi|306519384|ref|ZP_07405731.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           QCD-32g58]
 gi|260208618|emb|CBA61346.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           CD196]
 gi|260212070|emb|CBE02658.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           R20291]
          Length = 244

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 34/131 (25%)

Query: 8   EIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F T+ G G          R    F GC L           +C++C   DT        
Sbjct: 10  ETFGTVDGPG---------IRYILFFQGCPL-----------RCKYCHNRDT----WDIK 45

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
            G  Y VD++     +     +  G     +GGE  LQ +    L +   +      ++T
Sbjct: 46  SGKEYTVDEIITDALKYTSFMKFSGGGITASGGESTLQPEFLSELFKKAKENDIHTCLDT 105

Query: 119 NGTIEPPQGID 129
           +G ++  + ID
Sbjct: 106 SGFVDI-ETID 115


>gi|27365428|ref|NP_760956.1| pyruvate formate lyase-activating enzyme 1 [Vibrio vulnificus
           CMCP6]
 gi|37680529|ref|NP_935138.1| pyruvate formate lyase-activating enzyme 1 [Vibrio vulnificus
           YJ016]
 gi|320155814|ref|YP_004188193.1| pyruvate formate-lyase activating enzyme [Vibrio vulnificus
           MO6-24/O]
 gi|27361575|gb|AAO10483.1| pyruvate formate-lyase 1-activating enzyme [Vibrio vulnificus
           CMCP6]
 gi|37199277|dbj|BAC95109.1| pyruvate-formate lyase-activating enzyme [Vibrio vulnificus YJ016]
 gi|319931126|gb|ADV85990.1| pyruvate formate-lyase activating enzyme [Vibrio vulnificus
           MO6-24/O]
          Length = 246

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 27/154 (17%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C +C   DT         G    V+++    +    
Sbjct: 21  IRFIVFMQGC-----------LMRCMYCHNRDT----WDTHDGKEVTVEEIIKEAKSYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKA 137
                G     +GGE +LQ +    L +A +  G    ++TNG I     +    +    
Sbjct: 66  FMNASGGGITCSGGEAMLQPEFVRDLFRAAHAEGIHTCLDTNGYIRKHTDVVDEVL---E 122

Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
             DL +   + +K       +   N    DF R+
Sbjct: 123 ATDLVMLDIKHMKDEIHHDFIGVSNRRTLDFARY 156


>gi|222055504|ref|YP_002537866.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221564793|gb|ACM20765.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 291

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 30/124 (24%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL   +           C          +G   ++ ++  ++++ +I G    R  VLT
Sbjct: 19  CNLNCNK-----------C------YAPKEGSEASLAEIKHVLDKLYIAGL---RRVVLT 58

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI------EPPQGIDWICVS---PKAGCDL 141
           GGEP ++ DV  + Q   K GF + + TNG +      E    + WI +S   P A  D 
Sbjct: 59  GGEPTVREDVADIAQYAKKIGFAVYLSTNGLLLKQIWKEISPYLSWISISLDAPSAELDK 118

Query: 142 KIKG 145
            I G
Sbjct: 119 IITG 122


>gi|172065715|ref|YP_001816427.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
           MC40-6]
 gi|171997957|gb|ACB68874.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
           MC40-6]
          Length = 371

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 25/142 (17%)

Query: 41  DRLSAQCRFC---DT---DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           D+ + +C +C   D+   D+  +  +   R +  QL  +       G ++ R   LTGGE
Sbjct: 47  DQCNFRCGYCMPRDSFGPDYAFMPSS--ERLSFAQLEKIARAFISLGVEKIR---LTGGE 101

Query: 95  PLLQVDVP-LIQALN------KRGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ ++  LI+ L        +  EIA+ TNG++           G+  + VS  A  D
Sbjct: 102 PLLRRNLEALIERLATLTTVDGKPVEIALTTNGSLLAAKARTLRDAGLSRVTVSLDAIDD 161

Query: 141 LKIKGGQELKLVFPQVNVSPEN 162
              +   ++++   +V    E 
Sbjct: 162 TVFRRMSDVEVPVARVLAGIEA 183


>gi|126698338|ref|YP_001087235.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           630]
 gi|115249775|emb|CAJ67592.1| Pyruvate formate-lyase activating enzyme [Clostridium difficile]
          Length = 244

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 34/131 (25%)

Query: 8   EIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F T+ G G          R    F GC L           +C++C   DT        
Sbjct: 10  ETFGTVDGPG---------IRYILFFQGCPL-----------RCKYCHNRDT----WDIK 45

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
            G  Y VD++     +     +  G     +GGE  LQ +    L +   +      ++T
Sbjct: 46  SGKEYTVDEIITDALKYTSFMKFSGGGITASGGESTLQPEFLSELFKKAKENDIHTCLDT 105

Query: 119 NGTIEPPQGID 129
           +G ++  + ID
Sbjct: 106 SGFVDI-ETID 115


>gi|187777435|ref|ZP_02993908.1| hypothetical protein CLOSPO_01002 [Clostridium sporogenes ATCC
           15579]
 gi|187774363|gb|EDU38165.1| hypothetical protein CLOSPO_01002 [Clostridium sporogenes ATCC
           15579]
          Length = 279

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 65/180 (36%), Gaps = 38/180 (21%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDT--------------DF 54
           F ++ G G      A+F  F GCN       +  +   C+ C T              D 
Sbjct: 13  FSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDS 67

Query: 55  VGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           V     K               G R     + ++I+E   T         ++GGE  LQ 
Sbjct: 68  VKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKEILRTKPFISG-ITVSGGECTLQK 126

Query: 100 D--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
           D  + L + +   G  I V+TNG+++  +      +   A  D+K    QE K++  + N
Sbjct: 127 DFLIDLFEKVKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMVDVKSFDNQEHKMLTKRDN 186


>gi|269126251|ref|YP_003299621.1| Radical SAM domain-containing protein [Thermomonospora curvata DSM
           43183]
 gi|268311209|gb|ACY97583.1| Radical SAM domain protein [Thermomonospora curvata DSM 43183]
          Length = 315

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 19/101 (18%)

Query: 47  CRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           C FC     D     +      R + +++  L+ E   +           GGEPLL   +
Sbjct: 26  CLFCFATFRDVRRTVLPQGHLDRRDAERVVRLLAEAGFSK------ITFAGGEPLLCPWL 79

Query: 102 P-LIQALNKRGFEIAVETNGTIEPPQGID-------WICVS 134
           P L++     G   A+ TNG++     +D       WI VS
Sbjct: 80  PDLVELACDLGVTTALVTNGSLLDEAMLDRLAGTLEWITVS 120


>gi|254471421|ref|ZP_05084823.1| elongator protein 3/MiaB/NifB [Pseudovibrio sp. JE062]
 gi|211959567|gb|EEA94765.1| elongator protein 3/MiaB/NifB [Pseudovibrio sp. JE062]
          Length = 373

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C+ C T          G  + +Q  ++I++            + +
Sbjct: 5   CNL-----------KCKHCYT--TSGDVDFPGELSTEQAYEVIDDLK---GFRVPVIIFS 48

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GGEPL++ D + L     + GF  A+ TNGT+
Sbjct: 49  GGEPLMRPDMLELSAHAKQLGFYTALSTNGTL 80


>gi|189485586|ref|YP_001956527.1| hypothetical protein TGRD_583 [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287545|dbj|BAG14066.1| conserved hypothetical protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 197

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 27/130 (20%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G  A  +F    GCN+            C +C    +          N +++   ++++ 
Sbjct: 16  GTPAAVIF--TQGCNML-----------CPYCHNPQLVYPYLFEKTLNENEILYFLKKRQ 62

Query: 79  ITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG-------IDW 130
              +      V+TGGEP LQ D+   I+ +    F + ++TNGT             ID+
Sbjct: 63  GLLKG----VVITGGEPTLQNDLFNFIKKIKNLKFLVKLDTNGTNPKILQELIREKLIDF 118

Query: 131 ICVSPKAGCD 140
           + +  K+  +
Sbjct: 119 VAMDIKSSAE 128


>gi|229015831|ref|ZP_04172806.1| hypothetical protein bcere0030_4180 [Bacillus cereus AH1273]
 gi|229022037|ref|ZP_04178593.1| hypothetical protein bcere0029_4030 [Bacillus cereus AH1272]
 gi|228739293|gb|EEL89733.1| hypothetical protein bcere0029_4030 [Bacillus cereus AH1272]
 gi|228745463|gb|EEL95490.1| hypothetical protein bcere0030_4180 [Bacillus cereus AH1273]
          Length = 243

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D    L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLTQLFKKCKEAGIHTTIDSSG 107


>gi|120598447|ref|YP_963021.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sp. W3-18-1]
 gi|146293475|ref|YP_001183899.1| pyruvate formate lyase-activating enzyme 1 [Shewanella putrefaciens
           CN-32]
 gi|120558540|gb|ABM24467.1| pyruvate formate-lyase activating enzyme [Shewanella sp. W3-18-1]
 gi|145565165|gb|ABP76100.1| pyruvate formate-lyase activating enzyme [Shewanella putrefaciens
           CN-32]
 gi|319426779|gb|ADV54853.1| pyruvate formate-lyase activating enzyme [Shewanella putrefaciens
           200]
          Length = 246

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 41/123 (33%), Gaps = 33/123 (26%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F T+ G G          RF     GC             +C++C   DT       
Sbjct: 10  VESFGTVDGPG---------IRFIAFMQGC-----------LMRCQYCHNRDT----WDL 45

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117
             G    VD+L   I       +        +GGE +LQ +    L +A    G    ++
Sbjct: 46  DGGKEVQVDELMSQIISYRPFLDASNGGVTASGGEAILQAEFVAELFKACKNEGVHTCLD 105

Query: 118 TNG 120
           TNG
Sbjct: 106 TNG 108


>gi|307720175|ref|YP_003891315.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978268|gb|ADN08303.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Sulfurimonas autotrophica DSM 16294]
          Length = 233

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 26/113 (23%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
              +F  FSGCN+           +C FC   D  F      K G Y ++     +    
Sbjct: 30  LACIFW-FSGCNM-----------RCDFCYNKDIVFA-----KKGSYTLEDALAFL---- 68

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT--IEPPQGID 129
            T E      VL+GGE          + + K GF I ++TNGT  +   Q ID
Sbjct: 69  RTREHLLDAVVLSGGEASSYDLTAFCRQIKKLGFLIKLDTNGTNYLHVKQLID 121


>gi|323342337|ref|ZP_08082569.1| pyruvate formate-lyase activating enzyme [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463449|gb|EFY08643.1| pyruvate formate-lyase activating enzyme [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 247

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 23/127 (18%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
            SGC L           +C FC   D      +        VD+L D +        ++G
Sbjct: 29  LSGCPL-----------RCLFCHNPD----MWKTDPEDAITVDELMDKLRRFKPYFGEDG 73

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143
                 GGEPL Q +     ++A    G    ++T+G   P    D + V+     D+K 
Sbjct: 74  G-VTFCGGEPLNQPEFLYEAMKACKAEGISTCLDTSGFGRPDTFDDILSVTDTILYDIK- 131

Query: 144 KGGQELK 150
            G +E K
Sbjct: 132 -GLEEKK 137


>gi|150018872|ref|YP_001311126.1| glycyl-radical activating family protein [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905337|gb|ABR36170.1| glycyl-radical enzyme activating protein family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 306

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           KG +  ++Q+   +++  I   + G    L+GGEPL+Q D    L +A   +G+  A+ET
Sbjct: 108 KGKKMTIEQVIKELKKDAINYRRSGGGITLSGGEPLVQSDFSKELFKACKAQGWHTAIET 167

Query: 119 NG 120
            G
Sbjct: 168 TG 169


>gi|11499591|ref|NP_070833.1| heme biosynthesis protein (nirJ-2) [Archaeoglobus fulgidus DSM
           4304]
 gi|2648528|gb|AAB89245.1| heme biosynthesis protein (nirJ-2) [Archaeoglobus fulgidus DSM
           4304]
          Length = 468

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C+ C   +             D+  + I++    G         +
Sbjct: 124 CNL-----------RCKHC---YATAGKPLQDELTTDEALETIDKLDRLGVT---IIAFS 166

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPL++ D+  L +   ++G  +A+ TNGT+
Sbjct: 167 GGEPLVRRDIFELTRYAAEKGIYVAIATNGTL 198


>gi|315925289|ref|ZP_07921501.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621410|gb|EFV01379.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 246

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 42/119 (35%), Gaps = 28/119 (23%)

Query: 8   EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F ++ G G        +F    GC             +C FC   DT           
Sbjct: 11  ETFGSVDGPGIRFV----IF--LKGC-----------RMRCLFCHNADT----WDPKSDI 49

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
               D+L D  E       ++G    ++GGEPLLQ+   + L      RG    ++T G
Sbjct: 50  MMTADELLDQAERYRPYWGRKGG-ITVSGGEPLLQIEFLLELFTKAKARGIHTCLDTCG 107


>gi|149276421|ref|ZP_01882565.1| putative pyruvate formate-lyase 1 activating enzyme [Pedobacter sp.
           BAL39]
 gi|149232941|gb|EDM38316.1| putative pyruvate formate-lyase 1 activating enzyme [Pedobacter sp.
           BAL39]
          Length = 260

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 32/121 (26%)

Query: 8   EIFLTLQGEGGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTK 61
           E F      G H G   R+ VF    GC             +C +C   D+    +    
Sbjct: 27  ETF------GTHDGPGIRMVVFV--QGC-----------QFRCLYCQNPDS----LDVKG 63

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETN 119
           G    +D+L      Q     +EG    ++GGEPLLQ        + L++ G    +++N
Sbjct: 64  GRLVEIDELVKRALRQKTYFGEEGG-VTVSGGEPLLQRSKLTAFFKKLHEHGINTCLDSN 122

Query: 120 G 120
           G
Sbjct: 123 G 123


>gi|163938437|ref|YP_001643321.1| pyruvate formate-lyase activating enzyme [Bacillus
           weihenstephanensis KBAB4]
 gi|229009930|ref|ZP_04167149.1| hypothetical protein bmyco0001_4000 [Bacillus mycoides DSM 2048]
 gi|229056285|ref|ZP_04195706.1| hypothetical protein bcere0026_4160 [Bacillus cereus AH603]
 gi|229165447|ref|ZP_04293231.1| hypothetical protein bcere0007_4350 [Bacillus cereus AH621]
 gi|163860634|gb|ABY41693.1| pyruvate formate-lyase activating enzyme [Bacillus
           weihenstephanensis KBAB4]
 gi|228618045|gb|EEK75086.1| hypothetical protein bcere0007_4350 [Bacillus cereus AH621]
 gi|228721090|gb|EEL72628.1| hypothetical protein bcere0026_4160 [Bacillus cereus AH603]
 gi|228751361|gb|EEM01168.1| hypothetical protein bmyco0001_4000 [Bacillus mycoides DSM 2048]
          Length = 243

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D    L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLTQLFKKCKEAGIHTTIDSSG 107


>gi|322420929|ref|YP_004200152.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Geobacter sp. M18]
 gi|320127316|gb|ADW14876.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Geobacter sp. M18]
          Length = 332

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL              + DT              + +  + ++E             +T
Sbjct: 38  CNLACSGCGRIRE----YADTIQ--------EMMTLQECLNSVDE------CPAPVVTIT 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEP L   +  LI A+ KRG  I + TN  +   + +D +   P    ++ + G +E
Sbjct: 80  GGEPFLYPHIFELIDAVLKRGKHIYLCTN-ALLLEKALDTLKPHPNFVLNVHLDGMEE 136


>gi|145592440|ref|YP_001154442.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145284208|gb|ABP51790.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 380

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 18/96 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   ++     + G     +  D++++     E      + T
Sbjct: 46  CNL-----------RCVHC---YIDAGPAEAGELTTKEALDVVDQM---AEVGVPLILFT 88

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ 126
           GGEPL++ D   + +     G ++ + TNGT+  P+
Sbjct: 89  GGEPLIRPDFFEIAEQARDVGIKLVLSTNGTLITPE 124


>gi|117619525|ref|YP_856225.1| pyruvate formate lyase-activating enzyme 1 [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560932|gb|ABK37880.1| pyruvate formate-lyase activating enzyme [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 272

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G    V +L   I     
Sbjct: 46  IRFIVFMQGC-----------LMRCKYCHNRDT----WDTQGGREVTVPELMSDITSYRH 90

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                G     +GGE +LQ +    L  A  ++G    ++TNG
Sbjct: 91  FMNASGGGVTASGGEAMLQQNFIAELFAACKEKGIHTCLDTNG 133


>gi|237813104|ref|YP_002897555.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia pseudomallei MSHR346]
 gi|237503403|gb|ACQ95721.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia pseudomallei MSHR346]
          Length = 227

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 26/130 (20%)

Query: 17  GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           G  A    VF    GC             +C +C    +  +         D L   +  
Sbjct: 14  GQFA--AVVFV--QGCP-----------WRCGYCHNPHLQPRSQPAE-IEWDALLAFLAR 57

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE-----PPQGIDW 130
           +    +      V +GGEP +   +   I  + + GF++ + + GT           +DW
Sbjct: 58  RVGLIDA----VVFSGGEPSIDPALAASIHDVRRLGFKVGLHSAGTHPRRLAHLLPSLDW 113

Query: 131 ICVSPKAGCD 140
           I +  KA  D
Sbjct: 114 IGLDVKAPFD 123


>gi|210609920|ref|ZP_03288174.1| hypothetical protein CLONEX_00358 [Clostridium nexile DSM 1787]
 gi|210152713|gb|EEA83719.1| hypothetical protein CLONEX_00358 [Clostridium nexile DSM 1787]
          Length = 260

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 62/183 (33%), Gaps = 27/183 (14%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQG---TKGGRYNVDQLADLIEEQWITGEKEGRY 87
           GC L           +C++C T            G     + +  +I +  +     G  
Sbjct: 30  GCPL-----------RCQWCSTPESQSIECMMDYGYDATPESIMKIIRKDEVFYFHSGGG 78

Query: 88  CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN--GTIEPPQG----IDWICVSPKAGC 139
             ++GGE LLQ D    +++     G   A+E++  G  E  +     ++ + V  K   
Sbjct: 79  VTISGGEVLLQSDFVRDILKECRDEGINTAIESSLYGPYEALEKMLPYLNTVFVDFKLAD 138

Query: 140 D---LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196
           +   LK  G    K++   +      + G    R    P      EEN  L   +     
Sbjct: 139 EQQHLKYTGASN-KIIKDNIRRMDAEFTGDIHVRIPTIPTIN-MTEENMRLTAEFVRPLK 196

Query: 197 KWR 199
           + R
Sbjct: 197 QVR 199


>gi|119871970|ref|YP_929977.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM
           4184]
 gi|119673378|gb|ABL87634.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 259

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 16/118 (13%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL  G      +       T +V    T G   +  ++AD +    I  EK      +
Sbjct: 51  GCNLRCGMCWAWRN-------TSYVL---TAGAWMSPYEVADKLR--KIVKEKGFNQVRI 98

Query: 91  TGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
           +GGEPL+     + +I  L    +   VETNG +        +   P A   + IKG 
Sbjct: 99  SGGEPLIAPKHLIKVIDELRD--YVFIVETNGILIDKAVAKELAARPNAVVRVSIKGA 154


>gi|297579388|ref|ZP_06941316.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae RC385]
 gi|297536982|gb|EFH75815.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae RC385]
          Length = 246

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 52/156 (33%), Gaps = 27/156 (17%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT         G    V+++    +      
Sbjct: 25  VF--LQGC-----------LFRCKYCHNRDT----WDTHTGREVTVEEIIKEAKSYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGIDWICVSPKAG 138
              G     +GGE +LQ +      +A    G    ++TNG   +    ID +       
Sbjct: 68  NASGGGITCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYVRKFTPVIDEVL----EV 123

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
            DL +   +++     Q  +   N    DF R+  Q
Sbjct: 124 TDLVMLDIKQMDDEIHQDLIGVSNKRTLDFARYLHQ 159


>gi|325290637|ref|YP_004266818.1| 4-hydroxyphenylacetate decarboxylase subunit A [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324966038|gb|ADY56817.1| 4-hydroxyphenylacetate decarboxylase subunit A [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 312

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 48/163 (29%), Gaps = 57/163 (34%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD-----------------RLSAQCRFC 50
           E F T  G G       +F  F+GC L      +                 R    C  C
Sbjct: 14  ESFTTHDGPGCRT---TIF--FAGCPLKCDWCANPEAMESKRKILFAEQNCRARDGCSRC 68

Query: 51  ------------------D----TDFVGIQGTK----------GGRYNVDQLADLIEEQW 78
                             D    TD +    T+          G  Y  DQL + +    
Sbjct: 69  VKACPHGALRSANGALQIDRGICTDCISFHCTEVCHLDAIRLCGKDYTADQLMERL-RID 127

Query: 79  ITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
                EG     +GGEPL Q    + L+  L +     A+ET+
Sbjct: 128 SGSWGEGGGVTFSGGEPLRQAGFLLSLLPILKRENIHTAIETS 170


>gi|224543792|ref|ZP_03684331.1| hypothetical protein CATMIT_03013 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523283|gb|EEF92388.1| hypothetical protein CATMIT_03013 [Catenibacterium mitsuokai DSM
           15897]
          Length = 255

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 25/104 (24%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C+FC   DT        K   +   Q  D       
Sbjct: 30  VRFILFLHGCPF-----------RCQFCHNPDT----WASQKFEEWTPQQALDRALRFEP 74

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
              K+G    ++GGEPL+Q+D  +   +     G    ++T+G 
Sbjct: 75  YWGKDGG-ITVSGGEPLVQIDFLLEFFKLAKAAGINTCIDTSGA 117


>gi|170769684|ref|ZP_02904137.1| glycyl-radical enzyme activating protein family [Escherichia
           albertii TW07627]
 gi|170121492|gb|EDS90423.1| glycyl-radical enzyme activating protein family [Escherichia
           albertii TW07627]
          Length = 292

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 61/170 (35%), Gaps = 30/170 (17%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  ++C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRRESKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
           +Q L   G   A+ET G     + +    +  +   DLKI    + + V 
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDPNQARQVV 188


>gi|260495468|ref|ZP_05815594.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp.
           3_1_33]
 gi|260197005|gb|EEW94526.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp.
           3_1_33]
          Length = 247

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 26/103 (25%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C +C   DT        K   Y  +++     E   
Sbjct: 19  IRFVVFMQGCPL-----------RCLYCHNVDT---WELKDKNYIYTPEEI---FAELNK 61

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
                      +GGEPL Q    + L +   K G   A++T+G
Sbjct: 62  VRAFLTGGITASGGEPLFQASFILELFKLCKKNGIHTALDTSG 104


>gi|241663378|ref|YP_002981738.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Ralstonia pickettii 12D]
 gi|240865405|gb|ACS63066.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Ralstonia pickettii 12D]
          Length = 237

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 28/128 (21%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G++A  VF   +GC             +C +C         T+    + + +   ++ + 
Sbjct: 35  GQLAAVVFV--AGCP-----------WRCHYC---HNPHLQTRTRTLDWNDVFAFLQRRT 78

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
              +      V +GGEPL +  +P LI+ +   G++I + T G            +DW+ 
Sbjct: 79  GLLDA----VVFSGGEPLSEPHLPQLIRDVRALGYKIGLHTGGIYPARLTDVLPQVDWVG 134

Query: 133 VSPKAGCD 140
           +  K    
Sbjct: 135 LDIKTSAP 142


>gi|229131444|ref|ZP_04260340.1| hypothetical protein bcere0014_4130 [Bacillus cereus BDRD-ST196]
 gi|228652028|gb|EEL07969.1| hypothetical protein bcere0014_4130 [Bacillus cereus BDRD-ST196]
          Length = 243

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D    L +   + G    ++++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLTQLFKKCKEAGIHTTIDSSG 107


>gi|154150498|ref|YP_001404116.1| radical SAM domain-containing protein [Candidatus Methanoregula
           boonei 6A8]
 gi|153999050|gb|ABS55473.1| Radical SAM domain protein [Methanoregula boonei 6A8]
          Length = 391

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 17/108 (15%)

Query: 18  GHAG--RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE 75
             +G  R  VF        W+    DR +  C  C +          G  + ++    I+
Sbjct: 31  AFSGMRRPVVF--------WNLT--DRCNLSCTHCYS-RSAPDSPTQGELSTNEALAFID 79

Query: 76  EQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           +    G       + TGGEPL++ D+  L      +G + A+ TNGT+
Sbjct: 80  DLAAAG---IPLVIFTGGEPLVRPDIWQLAGHCRDKGIKTALSTNGTL 124


>gi|295397845|ref|ZP_06807908.1| pyruvate formate-lyase activating enzyme [Aerococcus viridans ATCC
           11563]
 gi|294973890|gb|EFG49654.1| pyruvate formate-lyase activating enzyme [Aerococcus viridans ATCC
           11563]
          Length = 281

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 54/162 (33%), Gaps = 53/162 (32%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC L           +C+FC   DT       
Sbjct: 40  TESFGSVDGPG---------IRFISFMQGCRL-----------RCQFCHNPDT----WNM 75

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAV 116
             G +Y   +L D   +        G    ++GGEPLLQ++  LI+        G    +
Sbjct: 76  RGGTQYTPQELFDEAIQYRSFWGNSGG-VTVSGGEPLLQIEF-LIEYFKICKAHGVHTTI 133

Query: 117 ETNG---TIEPPQG--------------IDWICVSPKAGCDL 141
           +T G   T+E P                 D   + PK    L
Sbjct: 134 DTCGAPFTLEEPFRSQFEELMKYTDLFLFDIKHIDPKGHVKL 175


>gi|255525040|ref|ZP_05391986.1| pyruvate formate-lyase activating enzyme [Clostridium
           carboxidivorans P7]
 gi|296187392|ref|ZP_06855787.1| pyruvate formate-lyase 1-activating enzyme [Clostridium
           carboxidivorans P7]
 gi|255511296|gb|EET87590.1| pyruvate formate-lyase activating enzyme [Clostridium
           carboxidivorans P7]
 gi|296047914|gb|EFG87353.1| pyruvate formate-lyase 1-activating enzyme [Clostridium
           carboxidivorans P7]
          Length = 264

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 33/128 (25%)

Query: 8   EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F ++ G G        +F    GC++           +C+FC   DT           
Sbjct: 24  ESFGSVDGPGIRFV----IF--LKGCHM-----------RCQFCHNPDT----WDMDGAE 62

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETNG 120
              VD+L     +      K+G    ++GGEPLLQ+D  LI+       +G  + ++T+G
Sbjct: 63  TKTVDELLSQALKYKTY-WKKGGGITVSGGEPLLQIDF-LIKFFTKAKAKGVHVTLDTSG 120

Query: 121 ---TIEPP 125
              T E P
Sbjct: 121 NPFTREQP 128


>gi|51245707|ref|YP_065591.1| coenzyme PQQ synthesis protein [Desulfotalea psychrophila LSv54]
 gi|50876744|emb|CAG36584.1| related to coenzyme PQQ synthesis protein [Desulfotalea
           psychrophila LSv54]
          Length = 354

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102
             +C +C   +            + ++ D+I++    G +  +  VL GGEPLL      
Sbjct: 40  DLRCVYC---YAASGVPLKNELTLVEIKDIIDQAIGLGAQ--KIIVLGGGEPLLYPHLFE 94

Query: 103 LIQALNKRGFEIAVETNG 120
           +I+ +  +G  + + TNG
Sbjct: 95  VIEYIRNKGLAVDLFTNG 112


>gi|255323614|ref|ZP_05364744.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Campylobacter showae RM3277]
 gi|255299328|gb|EET78615.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Campylobacter showae RM3277]
          Length = 228

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 28/149 (18%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           F+GCN+           +C +C   +     T  G+ +  +    ++++           
Sbjct: 29  FAGCNM-----------RCAYC---YNVSIVTGAGQISRAEFIKFLDKRKGKLSG----V 70

Query: 89  VLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGCD 140
           V +GGE  L    +PL   +  RGF + V+TNG+     G       ID+I +  KA  +
Sbjct: 71  VFSGGECTLSPAFLPLASEVKSRGFSLKVDTNGSNLTALGQAISLNLIDYIALDFKAPKE 130

Query: 141 --LKIKGGQELKLVFPQVNVSPENYIGFD 167
             LK+ G    K     +    +  + F+
Sbjct: 131 KFLKVTGSNLYKNFLQTLEFLLQTDLKFE 159


>gi|261415451|ref|YP_003249134.1| pyruvate formate-lyase activating enzyme [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371907|gb|ACX74652.1| pyruvate formate-lyase activating enzyme [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326244|gb|ADL25445.1| pyruvate formate-lyase activating enzyme [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 258

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 48/142 (33%), Gaps = 35/142 (24%)

Query: 1   MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDF 54
           M L  I   E F ++ G G          RF     GC +           +C+FC    
Sbjct: 1   MTLGRINKLETFGSVDGPG---------IRFVVFTQGCPM-----------RCKFCHNPE 40

Query: 55  VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY-------CVLTGGEPLLQVD--VPLIQ 105
               GTK      +   ++  E  +      +          ++GGEPL Q+D  +   +
Sbjct: 41  TWDFGTKSANGTANGSFEISAEDLLKKALRYKPYWGTDGGITVSGGEPLAQIDFMIEFFE 100

Query: 106 ALNKRGFEIAVETNGTIEPPQG 127
           A    G    V+T G    P G
Sbjct: 101 AAKSAGVHTCVDTCGVTFRPTG 122


>gi|15641871|ref|NP_231503.1| pyruvate formate lyase-activating enzyme 1 [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121587313|ref|ZP_01677085.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae
           2740-80]
 gi|121727114|ref|ZP_01680288.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V52]
 gi|147674120|ref|YP_001217403.1| pyruvate formate lyase-activating enzyme 1 [Vibrio cholerae O395]
 gi|153213085|ref|ZP_01948623.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 1587]
 gi|153818851|ref|ZP_01971518.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae NCTC
           8457]
 gi|153823101|ref|ZP_01975768.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae B33]
 gi|153825235|ref|ZP_01977902.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-2]
 gi|153830545|ref|ZP_01983212.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 623-39]
 gi|183179507|ref|ZP_02957718.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-3]
 gi|227081998|ref|YP_002810549.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae M66-2]
 gi|229508034|ref|ZP_04397539.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae BX
           330286]
 gi|229511727|ref|ZP_04401206.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae B33]
 gi|229515249|ref|ZP_04404709.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TMA 21]
 gi|229518865|ref|ZP_04408308.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC9]
 gi|229520329|ref|ZP_04409755.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TM
           11079-80]
 gi|229523888|ref|ZP_04413293.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae bv.
           albensis VL426]
 gi|229529108|ref|ZP_04418498.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae 12129(1)]
 gi|229607581|ref|YP_002878229.1| pyruvate formate lyase-activating enzyme 1 [Vibrio cholerae
           MJ-1236]
 gi|254226038|ref|ZP_04919637.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V51]
 gi|254286774|ref|ZP_04961728.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae
           AM-19226]
 gi|254848956|ref|ZP_05238306.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MO10]
 gi|255745371|ref|ZP_05419320.1| pyruvate formate-lyase activating enzyme [Vibrio cholera CIRS 101]
 gi|262153526|ref|ZP_06028655.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae INDRE
           91/1]
 gi|262167426|ref|ZP_06035133.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC27]
 gi|298498092|ref|ZP_07007899.1| pyruvate formate-lyase 1-activating enzyme [Vibrio cholerae MAK
           757]
 gi|9656400|gb|AAF95017.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121548473|gb|EAX58531.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae
           2740-80]
 gi|121630492|gb|EAX62884.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V52]
 gi|124116132|gb|EAY34952.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 1587]
 gi|125621421|gb|EAZ49756.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V51]
 gi|126510579|gb|EAZ73173.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae NCTC
           8457]
 gi|126519392|gb|EAZ76615.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae B33]
 gi|146316003|gb|ABQ20542.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae O395]
 gi|148873975|gb|EDL72110.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 623-39]
 gi|149741214|gb|EDM55265.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-2]
 gi|150423201|gb|EDN15148.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae
           AM-19226]
 gi|183012918|gb|EDT88218.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-3]
 gi|227009886|gb|ACP06098.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae M66-2]
 gi|227013767|gb|ACP09977.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae O395]
 gi|229332882|gb|EEN98368.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae 12129(1)]
 gi|229337469|gb|EEO02486.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae bv.
           albensis VL426]
 gi|229342695|gb|EEO07687.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TM
           11079-80]
 gi|229343554|gb|EEO08529.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC9]
 gi|229347954|gb|EEO12913.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TMA 21]
 gi|229351692|gb|EEO16633.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae B33]
 gi|229355539|gb|EEO20460.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae BX
           330286]
 gi|229370236|gb|ACQ60659.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae MJ-1236]
 gi|254844661|gb|EET23075.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MO10]
 gi|255737201|gb|EET92597.1| pyruvate formate-lyase activating enzyme [Vibrio cholera CIRS 101]
 gi|262024123|gb|EEY42817.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC27]
 gi|262030653|gb|EEY49288.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae INDRE
           91/1]
 gi|297542425|gb|EFH78475.1| pyruvate formate-lyase 1-activating enzyme [Vibrio cholerae MAK
           757]
 gi|327484419|gb|AEA78826.1| Pyruvate formate-lyase activating enzyme [Vibrio cholerae
           LMA3894-4]
          Length = 246

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 52/156 (33%), Gaps = 27/156 (17%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT         G    V+++    +      
Sbjct: 25  VF--LQGC-----------LFRCKYCHNRDT----WDTHTGREVTVEEIIKEAKSYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGIDWICVSPKAG 138
              G     +GGE +LQ +      +A    G    ++TNG   +    ID +       
Sbjct: 68  NASGGGITCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYVRKFTPVIDEVL----EV 123

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
            DL +   +++     Q  +   N    DF R+  Q
Sbjct: 124 TDLVMLDIKQMDDEIHQDLIGVSNKRTLDFARYLHQ 159


>gi|299067006|emb|CBJ38201.1| Molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum
           CMR15]
          Length = 373

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 69/170 (40%), Gaps = 27/170 (15%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +Q +     + +++  ++      G ++ R   LTGGE
Sbjct: 52  DRCNFRCIYCMPKDVFDKDYRFLQHS--ELLSFEEIERMVRLFIEHGVEKIR---LTGGE 106

Query: 95  PLLQVDVP-LIQALNKRG------FEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ D+  L++ L +         ++ + TNG +           G+  + VS  A  D
Sbjct: 107 PLLRKDIERLVEMLARLNTRDGKPLDLTLTTNGALLARKAQALKDAGLTRVTVSLDAIDD 166

Query: 141 LKIKGGQELKLVFPQV--NVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
              +   ++     +V   +     +G    + ++    G   ++   LA
Sbjct: 167 ATFRRMNDVDFAVAEVLHGIEVAQRVGLAPLKINMVVKKGDNDDQIVPLA 216


>gi|24211989|sp|Q8Y0K4|MOAA_RALSO RecName: Full=Molybdenum cofactor biosynthesis protein A
          Length = 345

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 69/170 (40%), Gaps = 27/170 (15%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +Q +     + +++  ++      G ++ R   LTGGE
Sbjct: 24  DRCNFRCIYCMPKDVFDKDYRFLQHS--ELLSFEEIERMVRLFIEHGVEKIR---LTGGE 78

Query: 95  PLLQVDVP-LIQALNKRG------FEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ D+  L++ L +         ++ + TNG +           G+  + VS  A  D
Sbjct: 79  PLLRKDIERLVEMLARLNTRDGKPLDLTLTTNGALLARKAQALKDAGLTRVTVSLDAIDD 138

Query: 141 LKIKGGQELKLVFPQV--NVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
              +   ++     +V   +     +G    + ++    G   ++   LA
Sbjct: 139 ATFRRMNDVDFAVAEVLHGIEVAQRVGLAPLKINMVVKKGDNDDQIVPLA 188


>gi|17545758|ref|NP_519160.1| molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum
           GMI1000]
 gi|17428052|emb|CAD14741.1| probable molybdenum cofactor biosynthesis protein a [Ralstonia
           solanacearum GMI1000]
          Length = 373

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 69/170 (40%), Gaps = 27/170 (15%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +Q +     + +++  ++      G ++ R   LTGGE
Sbjct: 52  DRCNFRCIYCMPKDVFDKDYRFLQHS--ELLSFEEIERMVRLFIEHGVEKIR---LTGGE 106

Query: 95  PLLQVDVP-LIQALNKRG------FEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ D+  L++ L +         ++ + TNG +           G+  + VS  A  D
Sbjct: 107 PLLRKDIERLVEMLARLNTRDGKPLDLTLTTNGALLARKAQALKDAGLTRVTVSLDAIDD 166

Query: 141 LKIKGGQELKLVFPQV--NVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
              +   ++     +V   +     +G    + ++    G   ++   LA
Sbjct: 167 ATFRRMNDVDFAVAEVLHGIEVAQRVGLAPLKINMVVKKGDNDDQIVPLA 216


>gi|307823974|ref|ZP_07654202.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
 gi|307735268|gb|EFO06117.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
          Length = 378

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            +       R +  C+ C T             +  ++  ++++       +    +L+G
Sbjct: 26  PVVIWNLIRRCNLTCKHCYT--TSTDINFPNELSTPEIYTVMDDLKA---FKVPVLILSG 80

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           GEPLL  D+  + +     GF +A+ TNGT      ID I
Sbjct: 81  GEPLLHPDIFNISRRAKDMGFYVALSTNGTKISADNIDEI 120


>gi|307691541|ref|ZP_07633778.1| pyruvate formate-lyase activating enzyme [Ruminococcaceae bacterium
           D16]
          Length = 242

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 23/106 (21%)

Query: 21  GRVAV-FCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEE 76
           G  AV F    GC L           +C +C   DT       + G     + L   +  
Sbjct: 18  GVRAVVF--LQGCPL-----------RCLYCHNPDTQ----TFSGGQETTPEALVKRLLR 60

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                E  G     +GGEPL Q D     ++ L   G    ++T+G
Sbjct: 61  FRPYFESSGGGVTFSGGEPLGQPDFLLACLKLLKAEGVHTCIDTSG 106


>gi|296877199|ref|ZP_06901239.1| pyruvate formate-lyase activating enzyme [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431719|gb|EFH17526.1| pyruvate formate-lyase activating enzyme [Streptococcus
           parasanguinis ATCC 15912]
          Length = 258

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 61/169 (36%), Gaps = 33/169 (19%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFC--------------DTDFVGIQGTKGGRYNVDQ 69
            VF    GC L           +C +C              D       GT G    VD+
Sbjct: 25  TVF--LKGCPL-----------RCPWCSNPESQRMNPEPMLD-AVTKAPGTTGQEKTVDE 70

Query: 70  LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTIEPPQG 127
           + D + +     E+ G    L+GGE   Q +    L++A  +RG   A+ET   +E  + 
Sbjct: 71  IIDEVMKDIDFYEESGGGMTLSGGEIFAQFEFAKALLKAAKERGLHTAIETTAFVEHEKF 130

Query: 128 IDWICVSPKAGCDLKIKGGQELKL---VFPQVNVSPENYIGFDFERFSL 173
           ID I        DLK     + K    V   + +   +Y   + ++  L
Sbjct: 131 IDLIQYVDFIYTDLKHYNSLKHKKKVGVHNSLIIENIHYAFKEKKKIVL 179


>gi|288920502|ref|ZP_06414809.1| hopanoid biosynthesis associated radical SAM protein HpnH [Frankia
           sp. EUN1f]
 gi|288348073|gb|EFC82343.1| hopanoid biosynthesis associated radical SAM protein HpnH [Frankia
           sp. EUN1f]
          Length = 332

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           R  VDQ     +E             L GGEPL+   +  +++ L KR   I + TN  +
Sbjct: 58  RMPVDQALAAADECG------APVVCLAGGEPLMHPQIEQIVEGLVKRKKFIYLCTN-AL 110

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQE 148
             P+ ID +  SP     + I G +E
Sbjct: 111 LLPRKIDKLKPSPYLSLAVHIDGLEE 136


>gi|119871571|ref|YP_929578.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM
           4184]
 gi|119672979|gb|ABL87235.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 389

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 18/96 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   ++             +   L+++     E      + T
Sbjct: 58  CNL-----------KCLHC---YIDAGAEDPRELTTAEALALVDQM---AEVGVPLILFT 100

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEPPQ 126
           GGEPL+ Q    + +     G ++ + TNGT+  P+
Sbjct: 101 GGEPLVRQDFFEIAERARDAGIKLVLSTNGTLITPE 136


>gi|20808263|ref|NP_623434.1| pyruvate-formate lyase-activating enzyme [Thermoanaerobacter
           tengcongensis MB4]
 gi|254479441|ref|ZP_05092770.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|20516862|gb|AAM25038.1| Pyruvate-formate lyase-activating enzyme [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034626|gb|EEB75371.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 228

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 63/158 (39%), Gaps = 30/158 (18%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
             VF   SGCN            +C +C   ++          +  +  D ++++    E
Sbjct: 19  ATVFV--SGCNF-----------KCPYCHNSYLIQMREGIK--SEKEFFDYLKKRANLIE 63

Query: 83  KEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPP-------QGIDWICVS 134
                  +TGGEP L   +   I+ +    FE+ ++TNG+             +D+I + 
Sbjct: 64  G----VCITGGEPTLWKGLKDFIKNIKDLNFEVKLDTNGSRPQVLESLLEEGLLDYIAMD 119

Query: 135 ---PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
              P    D+ +K  ++++ +   V +  ++ I ++F 
Sbjct: 120 IKAPIEKYDMFLKNEKDIENIKKSVELIKDSDINYEFR 157


>gi|255655113|ref|ZP_05400522.1| glycerol dehydratase activator [Clostridium difficile QCD-23m63]
 gi|296451101|ref|ZP_06892843.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           NAP08]
 gi|296880546|ref|ZP_06904508.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           NAP07]
 gi|296260108|gb|EFH06961.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           NAP08]
 gi|296428500|gb|EFH14385.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           NAP07]
          Length = 300

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 8/86 (9%)

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
              +V+++   +E+ +I   +       +GGEP LQ+D    L+     +G  IA+ET G
Sbjct: 103 EEMSVEEIVKEVEKDFIFFFESNGGITFSGGEPTLQIDFLRELVDIFYNKGINIAIETCG 162

Query: 121 ------TIEPPQGIDWICVSPKAGCD 140
                   +    ID I V  K+  D
Sbjct: 163 YFDWNKVNDVFDKIDHIFVDIKSMDD 188


>gi|257880503|ref|ZP_05660156.1| glycerol dehydratase activator [Enterococcus faecium 1,230,933]
 gi|257814731|gb|EEV43489.1| glycerol dehydratase activator [Enterococcus faecium 1,230,933]
          Length = 276

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 17/105 (16%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEE 76
           AG   V     GC L           +C +C   ++    I+   G     +++ D IE+
Sbjct: 24  AGLRTV-VYLKGCPL-----------RCAWCSIPESQSKQIEKGFGQTMTAEEVMDEIEK 71

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
             +          ++GGE L+Q D    ++Q     G    +ET+
Sbjct: 72  DAVFYFHSDGGVTISGGEALVQADFAKEILQKSKYIGINTVLETS 116


>gi|167570605|ref|ZP_02363479.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia oklahomensis C6786]
          Length = 239

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 26/130 (20%)

Query: 17  GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           G  A    VF    GC             +C +C    +  +         + L   +  
Sbjct: 26  GQFA--AVVFV--QGCP-----------WRCGYCHNPHLQARSQPAE-IEWNALLAFLAR 69

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE-----PPQGIDW 130
           +    +      V +GGEP +   +   I  + + GF++ + + GT           +DW
Sbjct: 70  RIGLIDA----VVFSGGEPSIDPALAASIDDVKRLGFKVGMHSAGTHPRRLAHLLPSLDW 125

Query: 131 ICVSPKAGCD 140
           I +  KA  D
Sbjct: 126 IGLDVKAPFD 135


>gi|167563434|ref|ZP_02356350.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia oklahomensis EO147]
          Length = 239

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 26/130 (20%)

Query: 17  GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           G  A    VF    GC             +C +C    +  +         + L   +  
Sbjct: 26  GQFA--AVVFV--QGCP-----------WRCGYCHNPHLQARSQPAE-IEWNALLAFLAR 69

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE-----PPQGIDW 130
           +    +      V +GGEP +   +   I  + + GF++ + + GT           +DW
Sbjct: 70  RIGLIDA----VVFSGGEPSIDPALAASIDDVKRLGFKVGMHSAGTHPRRLAHLLPSLDW 125

Query: 131 ICVSPKAGCD 140
           I +  KA  D
Sbjct: 126 IGLDVKAPFD 135


>gi|256026676|ref|ZP_05440510.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D11]
 gi|289764672|ref|ZP_06524050.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D11]
 gi|289716227|gb|EFD80239.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D11]
          Length = 244

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 26/103 (25%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C +C   DT        K   Y  +++     E   
Sbjct: 19  IRFVVFMQGCPL-----------RCLYCHNVDT---WELKDKNYIYTPEEI---FAELNK 61

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
                      +GGEPL Q    + L +   K G   A++T+G
Sbjct: 62  VRAFLTGGITASGGEPLFQASFILELFKLCKKNGIHTALDTSG 104


>gi|254166872|ref|ZP_04873726.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Aciduliprofundum boonei T469]
 gi|289596191|ref|YP_003482887.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Aciduliprofundum boonei T469]
 gi|197624482|gb|EDY37043.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Aciduliprofundum boonei T469]
 gi|289533978|gb|ADD08325.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Aciduliprofundum boonei T469]
          Length = 227

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 25/127 (19%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE--EQWI 79
              VF    GCN            +C FC  ++  +        + D + + I+  + WI
Sbjct: 19  VATVF--TYGCNF-----------RCPFC-HNYTLVTEPPTALLSEDNVIEEIKGLKGWI 64

Query: 80  TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAG 138
            G        +TGGEP +  D+   ++ L++    + ++TNGT EP   I+ I       
Sbjct: 65  DG------ICITGGEPTIHKDLKDFVKKLSEIA-PVKLDTNGT-EPSTLIEVIPYISYVA 116

Query: 139 CDLKIKG 145
            D+K   
Sbjct: 117 MDIKAPK 123


>gi|153939886|ref|YP_001392565.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum F
           str. Langeland]
 gi|152935782|gb|ABS41280.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum F
           str. Langeland]
 gi|295320551|gb|ADG00929.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum F
           str. 230613]
          Length = 232

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 23/101 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G   + D++   +       
Sbjct: 22  VF--FQGC-----------QLRCVYCHNPDT----WDFNAGIEISSDEVLKKVLRYKPY- 63

Query: 82  EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
            K+      +GGEPL+Q    + +++    +G    ++T+G
Sbjct: 64  FKQVGGITCSGGEPLMQPEFLLEILKKCKNQGIHTVLDTSG 104


>gi|269217507|ref|ZP_06161361.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269213128|gb|EEZ79468.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 265

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 26/128 (20%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G++A  VF    GC L            C +C  +   +     G     Q+  L+  + 
Sbjct: 5   GKLAAVVF--LQGCPL-----------ACPYC-QNEAILDPKVPGAVPWSQVEALLARRA 50

Query: 79  ITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
              +      VLTGGE L Q   V   + + + GF + + T G             DW+ 
Sbjct: 51  GLLDG----VVLTGGEALRQAGVVDAARRVREMGFGVGLHTAGAYPRALAKILPHTDWVG 106

Query: 133 VSPKAGCD 140
           +  KA  D
Sbjct: 107 IDVKAMPD 114


>gi|222528368|ref|YP_002572250.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222455215|gb|ACM59477.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 231

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 28/152 (18%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           F GCN             C FC   +        G++  D +     E     +      
Sbjct: 23  FGGCNF-----------SCPFC---YNSELVNFKGKFMDDSI---FFEYLDKRKGIVDAV 65

Query: 89  VLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGC 139
            +TGGEP L        I+ + ++   + ++TNG+             +D++ +  KA  
Sbjct: 66  CITGGEPTLNEEYLTEFIKKIKQKNLLVKLDTNGSKPEVLQRLLDAGLLDYVAMDVKAPL 125

Query: 140 D--LKIKGGQELKLVFPQVNVSPENYIGFDFE 169
           +   +I G  ++  +   + +   + I ++F 
Sbjct: 126 EKYPQITGFSDVDKIRRSIEILKNSNIDYEFR 157


>gi|309782387|ref|ZP_07677111.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Ralstonia sp. 5_7_47FAA]
 gi|308918724|gb|EFP64397.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Ralstonia sp. 5_7_47FAA]
          Length = 237

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 28/128 (21%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G++A  VF   +GC             +C +C         T+    + + +   ++ + 
Sbjct: 35  GQLAAVVFV--AGCP-----------WRCHYC---HNPHLQTRTRTLDWNDVFAFLQRRT 78

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
              +      V +GGEPL +  +P LI+ +   G++I + T G            +DW+ 
Sbjct: 79  GLLDA----VVFSGGEPLSEPHLPQLIRDVRALGYKIGLHTGGIYPARLTDVLPQLDWVG 134

Query: 133 VSPKAGCD 140
           +  K    
Sbjct: 135 LDIKTSAP 142


>gi|295677201|ref|YP_003605725.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp.
           CCGE1002]
 gi|295437044|gb|ADG16214.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp.
           CCGE1002]
          Length = 369

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 25/136 (18%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +  +     + +++  L ++    G ++ R   LTGGE
Sbjct: 45  DRCNFRCVYCMPRAVFDKDYAFLPHS--ALLSFEEIERLAQQFVAHGVEKIR---LTGGE 99

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ ++  LI  L +      R  ++ + TNG++           G+  + VS  A  D
Sbjct: 100 PLLRKNLEFLIDRLARLTTPAGRPLDLTLTTNGSLLARKARSLKDAGLTRVTVSLDALDD 159

Query: 141 LKIKGGQELKLVFPQV 156
              +   +       V
Sbjct: 160 ALFRRMNDADFAVADV 175


>gi|255654806|ref|ZP_05400215.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           QCD-23m63]
 gi|296449550|ref|ZP_06891327.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           NAP08]
 gi|296878127|ref|ZP_06902142.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           NAP07]
 gi|296261614|gb|EFH08432.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           NAP08]
 gi|296430880|gb|EFH16712.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           NAP07]
          Length = 244

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 34/131 (25%)

Query: 8   EIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F T+ G G          R    F GC L           +C++C   DT        
Sbjct: 10  ETFGTVDGPG---------IRYILFFQGCPL-----------RCKYCHNRDT----WDIK 45

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
            G  Y VD++     +     +        +GGE  LQ +    L +   +      ++T
Sbjct: 46  SGKEYTVDEIITDALKYTSFMKFSDGGITASGGESTLQPEFLSELFKKAKENDIHTCLDT 105

Query: 119 NGTIEPPQGID 129
           +G ++  + ID
Sbjct: 106 SGFVDI-ETID 115


>gi|152991509|ref|YP_001357231.1| hypothetical protein NIS_1769 [Nitratiruptor sp. SB155-2]
 gi|151423370|dbj|BAF70874.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 227

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 20/102 (19%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
            A+F   +GCN++           C +C             RY   +  + ++++    E
Sbjct: 24  AAIFW-LAGCNMY-----------CPYC---HNAEIVHGKNRYPFQKALEFLQKRRGLLE 68

Query: 83  KEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
                 V++GGEP L  ++  +  ++ + GF I ++TNG+  
Sbjct: 69  G----VVISGGEPTLHPELQTICSSIKELGFLIKLDTNGSRP 106


>gi|237745221|ref|ZP_04575702.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 7_1]
 gi|229432450|gb|EEO42662.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 7_1]
          Length = 242

 Score = 48.9 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 26/103 (25%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C +C   DT        K   Y  +++     E   
Sbjct: 19  IRFVVFMQGCPL-----------RCLYCHNVDT---WELKDKNYIYTPEEI---FAELNK 61

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
                      +GGEPL Q    + L +   K G   A++T+G
Sbjct: 62  VRAFLTGGITASGGEPLFQASFILELFKLCKKNGIHTALDTSG 104


>gi|290969198|ref|ZP_06560723.1| putative pyruvate formate-lyase-activating enzyme [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290780704|gb|EFD93307.1| putative pyruvate formate-lyase-activating enzyme [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 308

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
                RE       C    T F       G    V Q+ + +E++       G    L+G
Sbjct: 81  PYKLLREHCTACTDCVQ--TCFANALTVIGEDMTVAQVMEKLEKEDTMFRYSGGGVTLSG 138

Query: 93  GEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           GEPL Q D  + + +A    G+  A+ET G
Sbjct: 139 GEPLTQADFAMEIFKACKANGWNTAIETTG 168


>gi|257883510|ref|ZP_05663163.1| glycerol dehydratase activator [Enterococcus faecium 1,231,502]
 gi|257891910|ref|ZP_05671563.1| glycerol dehydratase activator [Enterococcus faecium 1,231,410]
 gi|257894775|ref|ZP_05674428.1| glycerol dehydratase activator [Enterococcus faecium 1,231,408]
 gi|260558188|ref|ZP_05830385.1| predicted protein [Enterococcus faecium C68]
 gi|261206565|ref|ZP_05921264.1| predicted protein [Enterococcus faecium TC 6]
 gi|294620265|ref|ZP_06699590.1| BssD [Enterococcus faecium E1679]
 gi|314996175|ref|ZP_07861240.1| glycyl-radical enzyme activating family protein [Enterococcus
           faecium TX0133a01]
 gi|257819168|gb|EEV46496.1| glycerol dehydratase activator [Enterococcus faecium 1,231,502]
 gi|257828270|gb|EEV54896.1| glycerol dehydratase activator [Enterococcus faecium 1,231,410]
 gi|257831154|gb|EEV57761.1| glycerol dehydratase activator [Enterococcus faecium 1,231,408]
 gi|260075770|gb|EEW64075.1| predicted protein [Enterococcus faecium C68]
 gi|260079182|gb|EEW66874.1| predicted protein [Enterococcus faecium TC 6]
 gi|291593506|gb|EFF25055.1| BssD [Enterococcus faecium E1679]
 gi|313589639|gb|EFR68484.1| glycyl-radical enzyme activating family protein [Enterococcus
           faecium TX0133a01]
          Length = 323

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 17/105 (16%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEE 76
           AG   V     GC L           +C +C   ++    I+   G     +++ D IE+
Sbjct: 17  AGLRTV-VYLKGCPL-----------RCAWCSIPESQSKQIEKGFGQTMTAEEVMDEIEK 64

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
             +          ++GGE L+Q D    ++Q     G    +ET+
Sbjct: 65  DAVFYFHSDGGVTISGGEALVQADFAKEILQKSKYIGINTVLETS 109


>gi|194433239|ref|ZP_03065520.1| glycyl-radical enzyme activating protein family [Shigella
           dysenteriae 1012]
 gi|194418523|gb|EDX34611.1| glycyl-radical enzyme activating protein family [Shigella
           dysenteriae 1012]
 gi|332085291|gb|EGI90465.1| glycyl-radical enzyme activating family protein [Shigella
           dysenteriae 155-74]
          Length = 279

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 74/216 (34%), Gaps = 36/216 (16%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 11  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 66  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQVNVS 159
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V  +
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQAWDVVKMNLPRVLEN 185

Query: 160 PENYIGFDFERFSLQPMDGPF--LEENTNLAISYCF 193
               +          P+   F    EN   A+    
Sbjct: 186 LRLLVSEGVNVIPRLPLIPSFTLSRENMQQALDVLI 221


>gi|187731448|ref|YP_001882647.1| pyruvate formate lyase II activase [Shigella boydii CDC 3083-94]
 gi|187428440|gb|ACD07714.1| glycyl-radical enzyme activating protein family [Shigella boydii
           CDC 3083-94]
          Length = 292

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPVSKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195


>gi|312137064|ref|YP_004004401.1| radical sam domain protein [Methanothermus fervidus DSM 2088]
 gi|311224783|gb|ADP77639.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088]
          Length = 274

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 25/126 (19%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE-GRY 87
            SGCN             C  C   F   +   G    V +L  L+E+   +   +  + 
Sbjct: 24  LSGCNF-----------NCLGC---FSIAKDIVGKPMTVKELVKLVEDSSRSYYGDLPKE 69

Query: 88  CVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD---LK 142
            ++TGGEP L       LI +L     +I +E+NG +   + +D +    KAG D   L 
Sbjct: 70  IIITGGEPTLNKKYLKKLISSLRSS--QIIIESNGYLLDDKYVDELI---KAGLDGIMLD 124

Query: 143 IKGGQE 148
           +K   E
Sbjct: 125 LKAFDE 130


>gi|294677721|ref|YP_003578336.1| [pyruvate formate-lyase]-activating enzyme [Rhodobacter capsulatus
           SB 1003]
 gi|294476541|gb|ADE85929.1| [pyruvate formate-lyase]-activating enzyme-1 [Rhodobacter
           capsulatus SB 1003]
          Length = 305

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 9/98 (9%)

Query: 32  CN---LWSGREQDRLSAQCRFC-D-TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKE 84
           C    L          A+C  C D T     +  K  G R +V ++   + +  I   + 
Sbjct: 71  CPVGALSRDNPGFVDRAKCIRCGDCTKVCPTEALKRAGRRMSVAEVMQELRKDAIHYRRS 130

Query: 85  GRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG 120
           G    L+GGEPLLQ      L+ A +++G+  A+ET G
Sbjct: 131 GGGVTLSGGEPLLQAAFAKQLLMACHEQGWNTAMETTG 168


>gi|289578146|ref|YP_003476773.1| radical SAM protein [Thermoanaerobacter italicus Ab9]
 gi|289527859|gb|ADD02211.1| Radical SAM domain protein [Thermoanaerobacter italicus Ab9]
          Length = 304

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 17/96 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C   +  + G++      ++  D+I E    G       +L 
Sbjct: 15  CNL-----------DCIYC---YKKVIGSRNDDILPEKAIDIIVEN--LGSNPAVLVILE 58

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ 126
           GGEPLL    + +   L +    + + TNGT+  P+
Sbjct: 59  GGEPLLHPRFIEIFYKLKEYSVAVDILTNGTLFTPE 94


>gi|55378104|ref|YP_135954.1| molybdenum cofactor biosynthesis protein A [Haloarcula marismortui
           ATCC 43049]
 gi|55230829|gb|AAV46248.1| molybdenum cofactor biosynthesis protein A [Haloarcula marismortui
           ATCC 43049]
          Length = 360

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 11/97 (11%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR +  C +C      DT   G    +      D +   +E   +  E        TGGE
Sbjct: 19  DRCNFDCVYCHNEGLGDTR--GPMEAQDDELTADTIVAFLE---VAAEFGVDSVKFTGGE 73

Query: 95  PLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           P+L+ D+  I        E+++ TNGT  P +  D +
Sbjct: 74  PMLREDLEEIVRRAPDEMEVSMTTNGTFLPGRAPDLV 110


>gi|269792248|ref|YP_003317152.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099883|gb|ACZ18870.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 227

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 45/130 (34%), Gaps = 33/130 (25%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
             ++F   +GCNL           +C FC                V    D  E      
Sbjct: 22  CASLF--TAGCNL-----------RCPFC---------HNPELVPVPVAGDGPEAFLRVV 59

Query: 82  EKEGRY---CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG-------IDW 130
           E    +     ++GGEP +   +  L+  +   G ++ ++TNGT             +D+
Sbjct: 60  EGRRAFLDGVCISGGEPCMHRGLGELMARIRSMGLKVKLDTNGTYPEVLQDLLSRGLVDF 119

Query: 131 ICVSPKAGCD 140
           + +  KA  D
Sbjct: 120 VALDVKAPWD 129


>gi|257457268|ref|ZP_05622439.1| pyruvate formate-lyase 1-activating enzyme [Treponema vincentii
           ATCC 35580]
 gi|257445190|gb|EEV20262.1| pyruvate formate-lyase 1-activating enzyme [Treponema vincentii
           ATCC 35580]
          Length = 245

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 37/118 (31%), Gaps = 25/118 (21%)

Query: 8   EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
           E F T+ G G        VF    GC L            C  CDT        +     
Sbjct: 8   ETFGTVDGPGLRFV----VF--LQGCPLRCQY--------CHNCDT------WERKDARI 47

Query: 67  VDQLADLIEEQWITGEKE--GRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
           +D  A   E                +TGGEPL Q +    L +   +     A +T+G
Sbjct: 48  IDTAAQTFERIRRYKHYYLFAGGVTVTGGEPLGQPEYVKNLFELCKQESLHTAADTSG 105


>gi|149920733|ref|ZP_01909197.1| pyruvate formate-lyase-activating enzyme, putative [Plesiocystis
           pacifica SIR-1]
 gi|149818386|gb|EDM77837.1| pyruvate formate-lyase-activating enzyme, putative [Plesiocystis
           pacifica SIR-1]
          Length = 318

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 33/101 (32%), Gaps = 9/101 (8%)

Query: 32  CN---LWSGREQDRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           C    L  G E     ++C  C    D          G   + D L   +       E  
Sbjct: 69  CPEGALGLGVEGRVDWSKCTGCGACVDACPAQALTQVGAHVDADALLTTLLRDRPFFESS 128

Query: 85  GRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
           G     +GGEP+L     + L+  L + G    +ET G   
Sbjct: 129 GGGVTFSGGEPVLHEAFLLELLPRLGEAGISRCIETAGAYP 169


>gi|331655650|ref|ZP_08356642.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
           (Formate-C-acetyltransferase-activating enzyme 2)
           [Escherichia coli M718]
 gi|331046751|gb|EGI18836.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
           (Formate-C-acetyltransferase-activating enzyme 2)
           [Escherichia coli M718]
          Length = 315

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 47  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 101

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 102 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRSSGGGVTLSGGEVLMQAEFATRF 161

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 162 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 218


>gi|170727228|ref|YP_001761254.1| pyruvate formate lyase-activating enzyme 1 [Shewanella woodyi ATCC
           51908]
 gi|169812575|gb|ACA87159.1| pyruvate formate-lyase activating enzyme [Shewanella woodyi ATCC
           51908]
          Length = 246

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 33/122 (27%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F T+ G G          RF     GC             +C++C   DT        
Sbjct: 11  ESFGTVDGPG---------IRFITFMQGC-----------LMRCQYCHNRDT----WDLH 46

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
            G    V++L   I       E  G     +GGE +LQ +    L +A  K G    ++T
Sbjct: 47  GGKDIEVEELMSQIISYRPFLESSGGGVTASGGEAILQAEFVSALFEACKKEGIHTCLDT 106

Query: 119 NG 120
           NG
Sbjct: 107 NG 108


>gi|323974240|gb|EGB69370.1| glycyl-radical enzyme activating protein family protein
           [Escherichia coli TW10509]
          Length = 292

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRASGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L   G   A+ET G
Sbjct: 139 LQRLRLWGVSCAIETAG 155


>gi|268326277|emb|CBH39865.1| conserved hypothetical protein, radical SAM superfamily [uncultured
           archaeon]
          Length = 395

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C                 ++   LI++       + R  V T
Sbjct: 85  CNL-----------DCIHC---HAFGGEASYDELTEEEGRALIDQ---IAALDIRSFVFT 127

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D+  LI      GF + + TNGT+
Sbjct: 128 GGEPLLREDLFDLIAYAKSIGFSVFIATNGTL 159


>gi|268325167|emb|CBH38755.1| conserved hypothetical protein, radical SAM superfamily [uncultured
           archaeon]
          Length = 395

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C                 ++   LI++       + R  V T
Sbjct: 85  CNL-----------DCIHC---HAFGGEASYDELTEEEGRALIDQ---IAALDIRSFVFT 127

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D+  LI      GF + + TNGT+
Sbjct: 128 GGEPLLREDLFDLIAYAKSIGFSVFIATNGTL 159


>gi|91793759|ref|YP_563410.1| pyruvate formate lyase-activating enzyme 1 [Shewanella
           denitrificans OS217]
 gi|91715761|gb|ABE55687.1| Pyruvate formate-lyase activating [Shewanella denitrificans OS217]
          Length = 245

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 45/131 (34%), Gaps = 35/131 (26%)

Query: 1   MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---D 51
           M L  I   E F T+ G G          RF     GC             +C++C   D
Sbjct: 1   MTLGRIHSTESFGTVDGPG---------IRFIAFMQGC-----------LMRCQYCHNRD 40

Query: 52  TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNK 109
           +         G R +V +L   I +     +        +GGE +LQ +    L +A   
Sbjct: 41  S----WDLDGGTRVSVAELMAKIIDYKPFLDASNGGVTASGGEAILQAEFVAELFKACKD 96

Query: 110 RGFEIAVETNG 120
                 ++TNG
Sbjct: 97  NHIHTCLDTNG 107


>gi|323964310|gb|EGB59793.1| glycyl-radical enzyme activating protein family protein
           [Escherichia coli M863]
          Length = 292

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195


>gi|328883089|emb|CCA56328.1| Pyruvate formate-lyase activating enzyme [Streptomyces venezuelae
           ATCC 10712]
          Length = 270

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 21/98 (21%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
            SGC L            C +C   DT     +   G R + D +     +        G
Sbjct: 53  LSGCPLT-----------CLYCHNPDT----WKMRNGKRTSADAVIAEAGKYVRFISVSG 97

Query: 86  RYCVLTGGEPLLQVDV--PLIQAL-NKRGFEIAVETNG 120
               ++GGEPLLQ      L+  + ++ G   A++T+G
Sbjct: 98  GGATVSGGEPLLQPVFTGELLHRMKHELGLHTALDTSG 135


>gi|3127055|gb|AAC38452.1| TutE [Thauera aromatica]
          Length = 375

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 34  LWSGREQDRLSAQCR-FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           L   R +     +C   C     G + + G    +D++   +          G    ++G
Sbjct: 125 LKLDRSKCINCMRCVAVC---LTGSRDSVGMEMTLDEILREVLSDEPFYRNSGGGVTISG 181

Query: 93  GEPLLQVD--VPLIQALNKRGFEIAVETN 119
           G+PL      + L + + +RG  +A+ET+
Sbjct: 182 GDPLFHPAFTLELARKIKERGVHVAIETS 210


>gi|308063446|gb|ADO05333.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           Sat464]
          Length = 321

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 61/165 (36%), Gaps = 24/165 (14%)

Query: 46  QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102
           +C++C   T      G       +D + + ++     G K+ R   +TGGEPLL+     
Sbjct: 24  RCQYCMPTTPLNFFDGE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDE 78

Query: 103 LIQALNKRGFEIA--VETNGTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQELK 150
            I  L+    E+A  + TNG +      D        + V   S K+   LKI     LK
Sbjct: 79  FIAKLHAYNKEVALVLSTNGFLLKKMAKDLKNAGLSRVNVSLDSLKSDRVLKISQKDALK 138

Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
                +  S E  +     + ++  M     +E   L + Y    
Sbjct: 139 NTLEGIEESLEVGLKL---KLNMVVMKSVNDDEILEL-LEYAKNR 179


>gi|254171792|ref|ZP_04878468.1| heme biosynthesis protein [Thermococcus sp. AM4]
 gi|214033688|gb|EEB74514.1| heme biosynthesis protein [Thermococcus sp. AM4]
          Length = 554

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 56/153 (36%), Gaps = 16/153 (10%)

Query: 28  RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
           R +G  L      +  + +C+ C   +           ++++   L+++    G      
Sbjct: 145 RLAGPFLIVWNFTNMCNFRCQHC---YQRADKPLASELSLEEKLMLVDQLDKAGVAA--- 198

Query: 88  CVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG-TI--------EPPQGIDWICVSPKA 137
             ++GGEP +    + +++ L+ RG   +V TNG T             GI ++ VS  +
Sbjct: 199 VAISGGEPTIHPHFLRIVKELSSRGIHTSVATNGWTFAKKEELEKAVKAGIKYVEVSVDS 258

Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
               K    + +   +     + EN +      
Sbjct: 259 AKPEKHDKFRGIPGAWEHAVKALENAVELGISH 291


>gi|158522771|ref|YP_001530641.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158511597|gb|ABW68564.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 348

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 27/116 (23%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            + CNL           +C  C   ++           ++ +   +E       K     
Sbjct: 26  LTRCNL-----------RCAHC---YINPDQHGADTLPLETICRWLEAFSPATRKA--NL 69

Query: 89  VLTGGEPLLQVDVPLIQALNKR--GF-EIAVETNGTIE-------PPQGIDWICVS 134
           +  GGEP L  D+ L  A + R  G+  + ++TNG +         P  ID+I  S
Sbjct: 70  IFLGGEPTLHPDLALAAA-HARKIGYDSVTIDTNGYLFNDILDKTTPDTIDYISFS 124


>gi|146301796|ref|YP_001196387.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Flavobacterium johnsoniae UW101]
 gi|146156214|gb|ABQ07068.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Flavobacterium johnsoniae UW101]
          Length = 195

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 15/99 (15%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104
           +C +C   +        G+ + + + + ++ +    +      VL+GGE  +  ++ P I
Sbjct: 2   RCSYC---YNPDIVFGKGKLDFENILNFLKSRIGLLDG----VVLSGGECTIHKNIIPFI 54

Query: 105 QALNKRGFEIAVETNGTIEPPQG-------IDWICVSPK 136
           + +   GF + ++TNG+             ID+  +  K
Sbjct: 55  EEIKALGFIVKIDTNGSKPAVLKKLIDQKLIDYAALDFK 93


>gi|82778874|ref|YP_405223.1| pyruvate formate lyase II activase [Shigella dysenteriae Sd197]
 gi|309783898|ref|ZP_07678543.1| glycyl-radical enzyme activating family protein [Shigella
           dysenteriae 1617]
 gi|81243022|gb|ABB63732.1| probable pyruvate formate lyase activating enzyme 2 [Shigella
           dysenteriae Sd197]
 gi|308928269|gb|EFP73731.1| glycyl-radical enzyme activating family protein [Shigella
           dysenteriae 1617]
          Length = 292

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPVSKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195


>gi|294340360|emb|CAZ88741.1| Molybdenum cofactor biosynthesis protein A (Protein narA)
           [Thiomonas sp. 3As]
          Length = 378

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 15/131 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C    +  +  +   + ++    ++     I      R   LTGGEPLL+ 
Sbjct: 48  DRCNFRCTYCMPKEIFDKHYEFLSHADLLSFEEITRAARIFMSLGVRKIRLTGGEPLLRK 107

Query: 100 DVP-LIQALNK----RGF--EIAVETNGTIEPPQG-------IDWICVSPKAGCDLKIKG 145
           ++  L++ L+      G   E+ + TNG+I   +        +D + VS  A  D   + 
Sbjct: 108 NLERLVEMLHGLRTPEGLAPELTLTTNGSILARKATLLKEARLDRVTVSLDALDDAAFRQ 167

Query: 146 GQELKLVFPQV 156
             ++     +V
Sbjct: 168 MNDVDFPVAEV 178


>gi|51245329|ref|YP_065213.1| heme biosynthesis protein [Desulfotalea psychrophila LSv54]
 gi|50876366|emb|CAG36206.1| related to heme biosynthesis protein [Desulfotalea psychrophila
           LSv54]
          Length = 336

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 27/128 (21%)

Query: 17  GGHAGRVAVF--CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI 74
           G  AG   VF     + CNL          A C      ++  +       + + +A  +
Sbjct: 10  GFQAGERNVFLHI-LTACNLSC--------AHC------YINPEQHGSNTLDKETIAHWL 54

Query: 75  EEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP-------PQ 126
           +  +   EK+    +L GGEP L  D+  +I     +GF + V++NG +         P+
Sbjct: 55  D-LFADAEKKSNLILL-GGEPTLHPDLAEIISIAKAKGFSVTVDSNGYLHHDLLERTSPE 112

Query: 127 GIDWICVS 134
            +D++  S
Sbjct: 113 ELDYLSFS 120


>gi|307637459|gb|ADN79909.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           908]
          Length = 321

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 62/173 (35%), Gaps = 29/173 (16%)

Query: 46  QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102
           +C++C   T              +D + + ++     G K+ R   +TGGEPLL+     
Sbjct: 24  RCQYCMPTTPLDFFDDE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDE 78

Query: 103 LIQALNKRGFEIA--VETNGTI-------EPPQGIDWICV---SPKAGCDLKIKGGQELK 150
            I  L+    E+A  + TNG +           G+  + V   S K+   LKI     LK
Sbjct: 79  FIAKLHAYNKEVALVLSTNGFLLKKMVKGLKDAGLSRVNVSLDSLKSDRVLKISQKDALK 138

Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQ 203
                +  S +  +           M G   +E   L + Y         S+Q
Sbjct: 139 NALEGIEESLKVGLKLKLNTVV---MKGVNDDEILEL-LEYAKNR-----SIQ 182


>gi|261210513|ref|ZP_05924806.1| pyruvate formate-lyase activating enzyme [Vibrio sp. RC341]
 gi|260840298|gb|EEX66869.1| pyruvate formate-lyase activating enzyme [Vibrio sp. RC341]
          Length = 246

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 53/156 (33%), Gaps = 27/156 (17%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT         G    V+++    +      
Sbjct: 25  VF--LQGC-----------LFRCKYCHNRDT----WDTHTGREVTVEEIIKEAKSYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI-EPPQGIDWICVSPKAG 138
              G     +GGE +LQ +      +A    G    ++TNG I +    ID +       
Sbjct: 68  NASGGGITCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYIRKFTPVIDEVL----EV 123

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
            DL +   +++     Q  +   N    DF R+  Q
Sbjct: 124 TDLVMLDIKQMDDEIHQDLIGVSNKRTLDFARYLHQ 159


>gi|224373777|ref|YP_002608149.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Nautilia profundicola AmH]
 gi|223588973|gb|ACM92709.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Nautilia profundicola AmH]
          Length = 225

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 57/143 (39%), Gaps = 34/143 (23%)

Query: 11  LTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
            ++Q     +     GR+     FSGCN+           +C +C   +         + 
Sbjct: 5   YSIQ---KFSSLDFPGRLCAILWFSGCNM-----------RCPYC---YNKDVVFGEKQI 47

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT--- 121
             D++ + ++++    +        TGGE  L  ++ P  + + + GFEI ++TNG    
Sbjct: 48  EEDEVLEFLKKRIGLLDG----VSFTGGEATLYKNIIPFSRKIKEMGFEIKLDTNGLNFD 103

Query: 122 ----IEPPQGIDWICVSPKAGCD 140
               +     +D+I +  KA  +
Sbjct: 104 VVREMVEENLVDYIALDFKAPPE 126


>gi|169832135|ref|YP_001718117.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Candidatus Desulforudis audaxviator MP104C]
 gi|169638979|gb|ACA60485.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 263

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 25/127 (19%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
             VF R   CN            +C +C    +           VD +   +  +    +
Sbjct: 21  ATVFLR--RCNF-----------RCPWCQNPELVESSLFDTPVPVDDILHYLRRRRAMLD 67

Query: 83  KEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIEPPQG-------IDWICVS 134
                 V+TGGEP L   + L +  + + G  + ++TNG+             +D I V 
Sbjct: 68  G----LVVTGGEPTLSRYLTLFLTRVKEIGVPVKLDTNGSHPELVCGLLDERLVDVIAVD 123

Query: 135 PKAGCDL 141
            K    L
Sbjct: 124 YKVPLRL 130


>gi|169351507|ref|ZP_02868445.1| hypothetical protein CLOSPI_02287 [Clostridium spiroforme DSM 1552]
 gi|169291729|gb|EDS73862.1| hypothetical protein CLOSPI_02287 [Clostridium spiroforme DSM 1552]
          Length = 298

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 52/165 (31%)

Query: 3   LYSI--KEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDR--------------- 42
           + ++   E F T  G G       +F    GCNL   W    +                 
Sbjct: 1   MINVFNIEKFATHDGPGIRT---TIF--LKGCNLHCPWCANPESWSIKPTLMYDLRKCIK 55

Query: 43  ---------------------LSAQCRFCD----TDFVGIQGTKGGRYNVDQLADLIEEQ 77
                                   +C +C     +         G   +++ + D + + 
Sbjct: 56  CKKCVNVCKQKAISFDKKFLYDRLKCIYCKKCSESCLTQALTFAGKELSINTIVDEVMKD 115

Query: 78  WITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNG 120
               +       ++GGEP +Q    + LI+ L K+   IA+ET G
Sbjct: 116 KDYFDNSNGGITISGGEPFVQFIAMMKLIKELKKQDLHIAIETTG 160


>gi|118476198|ref|YP_893349.1| formate acetyltransferase activating enzyme [Bacillus thuringiensis
           str. Al Hakam]
 gi|196045353|ref|ZP_03112585.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus 03BB108]
 gi|229182833|ref|ZP_04310070.1| hypothetical protein bcere0004_4140 [Bacillus cereus BGSC 6E1]
 gi|118415423|gb|ABK83842.1| formate acetyltransferase activating enzyme [Bacillus thuringiensis
           str. Al Hakam]
 gi|196023937|gb|EDX62612.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus 03BB108]
 gi|228600639|gb|EEK58222.1| hypothetical protein bcere0004_4140 [Bacillus cereus BGSC 6E1]
          Length = 243

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG    V+++   +       
Sbjct: 24  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKEITVEEVMQDVTCYLPFI 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E  G    ++GGEPLLQ+D  + L +   + G    V+++G
Sbjct: 67  EASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTVDSSG 107


>gi|17223652|gb|AAK50370.1| putative benzylsuccinate synthase activating enzyme [Azoarcus sp.
           T]
          Length = 332

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 60/173 (34%)

Query: 1   MKLYSIKEI--FLTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS-----------AQ 46
           M++  + EI  F +LQ G G       +F    GC L      +  +           A+
Sbjct: 1   MRIPVVTEIQRF-SLQDGPGIRT---TIF--LKGCPLRCPWCHNPETQDVRQEFYYYPAR 54

Query: 47  CRFC--------------------------D-TD-----------FVGIQGTKGGRYNVD 68
           C  C                          D TD               + T G R +V+
Sbjct: 55  CVGCGRCMAVCPAGTSRLVHNSDGRTIVELDRTDCQRCMRCVAACLTDARTTVGQRMSVE 114

Query: 69  QLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
           ++              G    ++GG+PL      + L + + +R   +A+ET+
Sbjct: 115 EILREALSDSPFYRNSGGGVTISGGDPLFHPSFTLELARRIKERNVHVAIETS 167


>gi|324111425|gb|EGC05406.1| glycyl-radical enzyme activating protein family protein
           [Escherichia fergusonii B253]
          Length = 292

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  +     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDVFFRASGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195


>gi|312128493|ref|YP_003993367.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778512|gb|ADQ07998.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 231

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 30/153 (19%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
           F GCN             C FC ++D V  +G+            +  E     +     
Sbjct: 23  FGGCNF-----------SCPFCYNSDLVNFKGSFMDD-------SIFFEYLDKRKGIVDA 64

Query: 88  CVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAG 138
             +TGGEP L        I+ +  R   + ++TNG+             +D++ +  KA 
Sbjct: 65  VCITGGEPTLNEEYLTEFIKKIKNRSLLVKLDTNGSRPEVLQRLLDAGLLDYVAMDVKAP 124

Query: 139 CD--LKIKGGQELKLVFPQVNVSPENYIGFDFE 169
            +   +I G  ++  +   + +   + I ++F 
Sbjct: 125 LEKYPQITGFSDVDKIRRSIEILKNSNIDYEFR 157


>gi|257791814|ref|YP_003182420.1| Radical SAM domain-containing protein [Eggerthella lenta DSM 2243]
 gi|257475711|gb|ACV56031.1| Radical SAM domain protein [Eggerthella lenta DSM 2243]
          Length = 399

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 19/97 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C  C   + G +  +  G  +  +   +I++    G       + 
Sbjct: 50  CNL-----------RCVHC---YAGSECKSYEGEMSSGEAKAMIDDLSAFG---APVLLF 92

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           +GGEP ++ DV  L+Q    RG  + + TNGT+  P+
Sbjct: 93  SGGEPCMREDVVELMQHAKDRGMRVVLSTNGTLITPE 129


>gi|94969737|ref|YP_591785.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551787|gb|ABF41711.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 413

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 17/93 (18%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL           +C  C       +       +  +  D+I +     +      VL
Sbjct: 23  GCNL-----------RCVHC--RATATELASPNDLSTPRALDIISQ---IADFCSPILVL 66

Query: 91  TGGEPLLQVDVPLIQALN-KRGFEIAVETNGTI 122
           +GGEPL + D+  +     ++G  +A+ TNGT+
Sbjct: 67  SGGEPLYRPDIFQLARFATEKGIRVALATNGTL 99


>gi|327250596|gb|EGE62304.1| glycyl-radical enzyme activating family protein [Escherichia coli
           STEC_7v]
          Length = 279

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 11  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 66  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 182


>gi|256751948|ref|ZP_05492818.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749153|gb|EEU62187.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 333

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 17/96 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C   +  + G++      ++  D+I E    G       +L 
Sbjct: 30  CNL-----------DCIYC---YKKVIGSRNDDILPEKAIDIIVEN--LGSNPAVLVILE 73

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ 126
           GGEPLL    + +   L +    + + TNGT+  P+
Sbjct: 74  GGEPLLHPRFIEIFYKLKEYSVAVDILTNGTLFTPE 109


>gi|227893095|ref|ZP_04010900.1| formate acetyltransferase activating enzyme [Lactobacillus
           ultunensis DSM 16047]
 gi|227865073|gb|EEJ72494.1| formate acetyltransferase activating enzyme [Lactobacillus
           ultunensis DSM 16047]
          Length = 275

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 28/111 (25%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK-------------GGRYNVDQLA 71
           VF  F GC L           +C++C      +   +             G    VD++ 
Sbjct: 34  VF--FKGCPL-----------RCKWCSNPESQLGKPEPMFDSSKNKMITCGKFMTVDEVM 80

Query: 72  DLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           D + +     +  G     +GGE L Q    + L + L   G  +A ET G
Sbjct: 81  DEVMKDKAFYDASGGGVTFSGGEVLFQAKFAIELAKRLKAEGVHLACETTG 131


>gi|82546303|ref|YP_410250.1| pyruvate formate lyase II activase [Shigella boydii Sb227]
 gi|81247714|gb|ABB68422.1| probable pyruvate formate lyase activating enzyme 2 [Shigella
           boydii Sb227]
          Length = 292

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195


>gi|78060080|ref|YP_366655.1| GTP cyclohydrolase subunit MoaA [Burkholderia sp. 383]
 gi|77964630|gb|ABB06011.1| GTP cyclohydrolase subunit MoaA [Burkholderia sp. 383]
          Length = 374

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 24/145 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN   G    R S        D+  +  +   R +  QL  +       G ++ R   +T
Sbjct: 52  CNFRCGYCMPRESFGA-----DYAFMPSS--ERLSFAQLEKIARAFTSLGVEKIR---IT 101

Query: 92  GGEPLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKA 137
           GGEPLL+ ++  LI+ L        +  EIA+ TNG++           G+  + VS  A
Sbjct: 102 GGEPLLRRNLEALIERLAALTTVDGKPVEIALTTNGSLLAAKARTLRDAGLSRVTVSLDA 161

Query: 138 GCDLKIKGGQELKLVFPQVNVSPEN 162
             D   +   +  +   +V    E 
Sbjct: 162 IDDAVFRRMSDADVPVSRVLAGIEA 186


>gi|83590093|ref|YP_430102.1| radical SAM family protein [Moorella thermoacetica ATCC 39073]
 gi|83573007|gb|ABC19559.1| Radical SAM [Moorella thermoacetica ATCC 39073]
          Length = 335

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 63/175 (36%), Gaps = 35/175 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL              +CD  +              +  +LI+E    G    R  + +
Sbjct: 11  CNL--------------YCDHCYRDAGARVEDELTTAEAGNLIDEAAKAG---FRIMIFS 53

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQ-------------GIDWICVSPKA 137
           GGEPLL+ D+P L+     RG    + +NGT+   +             GI      P  
Sbjct: 54  GGEPLLRPDLPELVSRAAARGLRPVLGSNGTLLTTELARELKAAGALAVGISLDSCDPAR 113

Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-RFSLQPMDGPFLEENTNLAISY 191
              L+ K G   K V     ++     G  F+   ++   +   LE+ T+LA+  
Sbjct: 114 HDRLRQKEGAWRKAV---AGMAACREAGLPFQVHTTVFDWNQDELEKLTDLAVEL 165


>gi|320180323|gb|EFW55255.1| Pyruvate formate-lyase activating enzyme [Shigella boydii ATCC
           9905]
          Length = 292

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQAWDVVKMNLPRV 195


>gi|212640612|ref|YP_002317132.1| Pyruvate-formate lyase-activating enzyme [Anoxybacillus
           flavithermus WK1]
 gi|212562092|gb|ACJ35147.1| Pyruvate-formate lyase-activating enzyme [Anoxybacillus
           flavithermus WK1]
          Length = 242

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT  +G    KG + +VD++ D  +      
Sbjct: 23  IF--TQGC-----------LLRCQYCHNADTWEIG----KGKQMSVDEIIDDAQTYLPFM 65

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           +  G    ++ GEPLLQ+D  + L +   + G    ++++G
Sbjct: 66  QASGGGITVSSGEPLLQIDFLIELFRRCKQLGIHTTIDSSG 106


>gi|254430591|ref|ZP_05044294.1| molybdenum cofactor biosynthesis protein A [Cyanobium sp. PCC 7001]
 gi|197625044|gb|EDY37603.1| molybdenum cofactor biosynthesis protein A [Cyanobium sp. PCC 7001]
          Length = 356

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 30/112 (26%)

Query: 21  GRVAVFCRF---SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           GR     R    + CNL            C +C            G  ++ +   LIE  
Sbjct: 19  GRPTGVLRLSLTARCNL-----------ACPYC----CPDAIDPPGLLDLRERLALIEAA 63

Query: 78  WITGEKEGRYCVLTGGEPLLQVDVP-LIQA---LNKRG-----FEIAVETNG 120
              G +  R   LTGGEPLL   +  L+QA   L +RG       IA+ TNG
Sbjct: 64  ASLGFRCLR---LTGGEPLLHRGLEDLVQAVQPLRRRGGPASLRTIALTTNG 112


>gi|302336771|ref|YP_003801977.1| glycyl-radical enzyme activating protein family [Spirochaeta
           smaragdinae DSM 11293]
 gi|301633956|gb|ADK79383.1| glycyl-radical enzyme activating protein family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 305

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 46  QCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-- 99
           +C  C    D  F   +   G   + + +   I +     E  G     +GGEPLLQ+  
Sbjct: 85  RCTLCASCVDACFYNARRIAGEVRSSEDIMREIMKDQSFYENSGGGVTFSGGEPLLQIEG 144

Query: 100 DVPLIQALNKRGFEIAVETNGTIEP 124
            V L       G   A+ET G++  
Sbjct: 145 LVDLASRCRSEGIHTALETAGSVPW 169


>gi|194429391|ref|ZP_03061915.1| glycyl-radical enzyme activating protein family [Escherichia coli
           B171]
 gi|209921436|ref|YP_002295520.1| pyruvate formate lyase II activase [Escherichia coli SE11]
 gi|218556513|ref|YP_002389427.1| pyruvate formate lyase II activase [Escherichia coli IAI1]
 gi|260846759|ref|YP_003224537.1| pyruvate formate lyase II activase [Escherichia coli O103:H2 str.
           12009]
 gi|194412538|gb|EDX28836.1| glycyl-radical enzyme activating protein family [Escherichia coli
           B171]
 gi|209914695|dbj|BAG79769.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
           SE11]
 gi|218363282|emb|CAR00931.1| pyruvate formate lyase II activase [Escherichia coli IAI1]
 gi|257761906|dbj|BAI33403.1| pyruvate formate lyase II activase [Escherichia coli O103:H2 str.
           12009]
          Length = 292

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195


>gi|320182813|gb|EFW57690.1| Pyruvate formate-lyase activating enzyme [Shigella flexneri CDC
           796-83]
          Length = 292

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195


>gi|306813781|ref|ZP_07447957.1| pyruvate formate lyase II activase [Escherichia coli NC101]
 gi|305852779|gb|EFM53226.1| pyruvate formate lyase II activase [Escherichia coli NC101]
          Length = 292

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L   G   A+ET G
Sbjct: 139 LQRLRLWGVSCAIETAG 155


>gi|293417460|ref|ZP_06660084.1| pyruvate formate lyase activating enzyme [Escherichia coli B185]
 gi|291430980|gb|EFF03976.1| pyruvate formate lyase activating enzyme [Escherichia coli B185]
          Length = 292

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195


>gi|215489289|ref|YP_002331720.1| pyruvate formate lyase II activase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312965391|ref|ZP_07779624.1| glycyl-radical enzyme activating family protein [Escherichia coli
           2362-75]
 gi|215267361|emb|CAS11812.1| pyruvate formate lyase II activase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312290065|gb|EFR17952.1| glycyl-radical enzyme activating family protein [Escherichia coli
           2362-75]
          Length = 292

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATLF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195


>gi|212694740|ref|ZP_03302868.1| hypothetical protein BACDOR_04272 [Bacteroides dorei DSM 17855]
 gi|212662719|gb|EEB23293.1| hypothetical protein BACDOR_04272 [Bacteroides dorei DSM 17855]
          Length = 322

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           GG  ++++   + ++    G     + +LTGGEPLL  D   L   L ++GF + + TN 
Sbjct: 10  GGLRSIEEWLHIADQLQEIG---TLFILLTGGEPLLYPDFKELYIRLKEKGFILTINTNA 66

Query: 121 TI 122
           T+
Sbjct: 67  TL 68


>gi|170680362|ref|YP_001746344.1| pyruvate formate lyase II activase [Escherichia coli SMS-3-5]
 gi|170518080|gb|ACB16258.1| glycyl-radical enzyme activating protein family [Escherichia coli
           SMS-3-5]
          Length = 292

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATLF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195


>gi|26250725|ref|NP_756765.1| pyruvate formate lyase II activase [Escherichia coli CFT073]
 gi|91213500|ref|YP_543486.1| pyruvate formate lyase II activase [Escherichia coli UTI89]
 gi|218561023|ref|YP_002393936.1| pyruvate formate lyase II activase [Escherichia coli S88]
 gi|218692238|ref|YP_002400450.1| pyruvate formate lyase II activase [Escherichia coli ED1a]
 gi|227885301|ref|ZP_04003106.1| [formate-C-acetyltransferase]-activating enzyme [Escherichia coli
           83972]
 gi|26111156|gb|AAN83339.1|AE016770_139 Pyruvate formate-lyase 2 activating enzyme [Escherichia coli
           CFT073]
 gi|91075074|gb|ABE09955.1| pyruvate formate-lyase 2 activating enzyme [Escherichia coli UTI89]
 gi|218367792|emb|CAR05586.1| pyruvate formate lyase II activase [Escherichia coli S88]
 gi|218429802|emb|CAR10764.2| pyruvate formate lyase II activase [Escherichia coli ED1a]
 gi|227837677|gb|EEJ48143.1| [formate-C-acetyltransferase]-activating enzyme [Escherichia coli
           83972]
 gi|294492844|gb|ADE91600.1| glycyl-radical enzyme activating protein family [Escherichia coli
           IHE3034]
 gi|307556100|gb|ADN48875.1| pyruvate formate-lyase 2-activating enzyme [Escherichia coli ABU
           83972]
 gi|307629029|gb|ADN73333.1| pyruvate formate lyase II activase [Escherichia coli UM146]
 gi|323949446|gb|EGB45335.1| glycyl-radical enzyme activating protein family protein
           [Escherichia coli H252]
 gi|323954273|gb|EGB50058.1| glycyl-radical enzyme activating protein family protein
           [Escherichia coli H263]
          Length = 292

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L   G   A+ET G
Sbjct: 139 LQRLRLWGVSCAIETAG 155


>gi|110644292|ref|YP_672022.1| pyruvate formate lyase II activase [Escherichia coli 536]
 gi|110345884|gb|ABG72121.1| pyruvate formate-lyase 2 activating enzyme [Escherichia coli 536]
          Length = 292

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L   G   A+ET G
Sbjct: 139 LQRLRLWGVSCAIETAG 155


>gi|331660512|ref|ZP_08361446.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
           (Formate-C-acetyltransferase-activating enzyme 2)
           [Escherichia coli TA206]
 gi|331052461|gb|EGI24498.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
           (Formate-C-acetyltransferase-activating enzyme 2)
           [Escherichia coli TA206]
          Length = 292

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L   G   A+ET G
Sbjct: 139 LQRLRLWGVSCAIETAG 155


>gi|160886082|ref|ZP_02067085.1| hypothetical protein BACOVA_04089 [Bacteroides ovatus ATCC 8483]
 gi|293369069|ref|ZP_06615666.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f]
 gi|156108895|gb|EDO10640.1| hypothetical protein BACOVA_04089 [Bacteroides ovatus ATCC 8483]
 gi|292635837|gb|EFF54332.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f]
          Length = 205

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 21/112 (18%)

Query: 11  LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL 70
           LT+ GEG           F GC L           +C++C              Y+ +QL
Sbjct: 14  LTIDGEGVTTLVA-----FHGCPL-----------RCKYCLNPTSLQPDGVWESYDCNQL 57

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI---QALNKRGFEIAVETN 119
            + + +  +            GGEPLLQ     I   + L    + I VET+
Sbjct: 58  YEEVRKDELYFLASCGGVTFGGGEPLLQS--EFIRQFRQLCGPEWRITVETS 107


>gi|281181023|dbj|BAI57353.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
           SE15]
          Length = 292

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L   G   A+ET G
Sbjct: 139 LQRLRLWGVSCAIETAG 155


>gi|222035668|emb|CAP78413.1| Pyruvate formate-lyase 2-activating enzyme [Escherichia coli LF82]
 gi|312948531|gb|ADR29358.1| pyruvate formate lyase II activase [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|320196777|gb|EFW71399.1| Pyruvate formate-lyase activating enzyme [Escherichia coli
           WV_060327]
          Length = 292

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L   G   A+ET G
Sbjct: 139 LQRLRLWGVSCAIETAG 155


>gi|323934441|gb|EGB30854.1| glycyl-radical enzyme activating protein family protein
           [Escherichia coli E1520]
          Length = 292

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195


>gi|320173030|gb|EFW48252.1| Pyruvate formate-lyase activating enzyme [Shigella dysenteriae CDC
           74-1112]
          Length = 292

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQCYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195


>gi|315298472|gb|EFU57727.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 16-3]
          Length = 279

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 11  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 66  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L   G   A+ET G
Sbjct: 126 LQRLRLWGVSCAIETAG 142


>gi|300975911|ref|ZP_07173218.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 45-1]
 gi|301048629|ref|ZP_07195642.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 185-1]
 gi|300299549|gb|EFJ55934.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 185-1]
 gi|300410177|gb|EFJ93715.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 45-1]
 gi|315289677|gb|EFU49070.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 110-3]
 gi|315292678|gb|EFU52030.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 153-1]
 gi|324006717|gb|EGB75936.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 57-2]
          Length = 279

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 11  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 66  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L   G   A+ET G
Sbjct: 126 LQRLRLWGVSCAIETAG 142


>gi|291531569|emb|CBK97154.1| Pyruvate-formate lyase-activating enzyme [Eubacterium siraeum 70/3]
          Length = 237

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 19/125 (15%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
            RF     GC L  G   +  +               + G    V  + + +        
Sbjct: 19  VRFVLFLQGCPLRCGYCHNPETR------------DASGGKTATVKDIMEKVLRCRNYFG 66

Query: 83  KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140
           K G    ++GGEPL+Q      L +   ++G    ++T+G I      + + V+     D
Sbjct: 67  KNGG-ITVSGGEPLMQAKFVTELFKECKRQGINTCLDTSGCIMNDDVTELLKVTDLCMLD 125

Query: 141 LKIKG 145
           +K+  
Sbjct: 126 IKMTN 130


>gi|254168929|ref|ZP_04875769.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Aciduliprofundum boonei T469]
 gi|197622193|gb|EDY34768.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Aciduliprofundum boonei T469]
          Length = 227

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 38/144 (26%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE--EQWI 79
              VF    GCN            +C FC  ++  +        + D + + I+  + WI
Sbjct: 19  VATVF--TYGCNF-----------RCPFC-HNYTLVTEPPTTLLSEDNVIEEIKGLKGWI 64

Query: 80  TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT-----IEPPQGIDWICV 133
            G        +TGGEP +  D+   ++ L++    + ++TNGT     IE    I ++ +
Sbjct: 65  DG------ICITGGEPTIHKDLKDFVKKLSEIA-PVKLDTNGTEPYTLIEVIPYISYVAM 117

Query: 134 S---PK------AGCDLKIKGGQE 148
               PK      AG  + ++  +E
Sbjct: 118 DIKAPKYRYNEFAGVSVNMEKIEE 141


>gi|191172690|ref|ZP_03034228.1| glycyl-radical enzyme activating protein family [Escherichia coli
           F11]
 gi|300986174|ref|ZP_07177758.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 200-1]
 gi|190906994|gb|EDV66595.1| glycyl-radical enzyme activating protein family [Escherichia coli
           F11]
 gi|300306408|gb|EFJ60928.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 200-1]
 gi|324012471|gb|EGB81690.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 60-1]
          Length = 279

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 11  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 66  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L   G   A+ET G
Sbjct: 126 LQRLRLWGVSCAIETAG 142


>gi|323492522|ref|ZP_08097670.1| pyruvate formate lyase-activating enzyme 1 [Vibrio brasiliensis LMG
           20546]
 gi|323313309|gb|EGA66425.1| pyruvate formate lyase-activating enzyme 1 [Vibrio brasiliensis LMG
           20546]
          Length = 246

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 52/161 (32%), Gaps = 28/161 (17%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C +C   DT         G    V+++ +  +      
Sbjct: 25  VF--LQGC-----------LMRCMYCHNRDT----WDTHDGKEVTVEEIINEAKSYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAG 138
              G     +GGE +LQ +      +A    G    ++TNG I    + ID +       
Sbjct: 68  NASGGGVTCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYIRKHTEVIDEVL----DA 123

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
            DL +   + +K       +   N    DF R  L  +   
Sbjct: 124 TDLVMLDLKHMKDEIHHDFIGVSNKRTLDFAR-YLHKIGQK 163


>gi|210630236|ref|ZP_03296326.1| hypothetical protein COLSTE_00210 [Collinsella stercoris DSM 13279]
 gi|210160562|gb|EEA91533.1| hypothetical protein COLSTE_00210 [Collinsella stercoris DSM 13279]
          Length = 272

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 24/93 (25%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC +           +C +C   DT  VG     G    V+++ D  E    
Sbjct: 35  VRFVVFTQGCPM-----------RCAYCHNPDTWAVGSGA--GTSVTVERIIDEFESNRP 81

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKR 110
                     +TGGEPLLQ +    L  A++  
Sbjct: 82  --FYRTGGITVTGGEPLLQPEFVGDLFAAMHAN 112


>gi|117626221|ref|YP_859544.1| pyruvate formate lyase II activase [Escherichia coli APEC O1]
 gi|237702989|ref|ZP_04533470.1| pyruvate formate-lyase 2 activating enzyme [Escherichia sp.
           3_2_53FAA]
 gi|115515345|gb|ABJ03420.1| pyruvate formate-lyase 2 activating enzyme [Escherichia coli APEC
           O1]
 gi|226902926|gb|EEH89185.1| pyruvate formate-lyase 2 activating enzyme [Escherichia sp.
           3_2_53FAA]
          Length = 315

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 47  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 101

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 102 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 161

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L   G   A+ET G
Sbjct: 162 LQRLRLWGVSCAIETAG 178


>gi|90579339|ref|ZP_01235149.1| putative pyruvate formate-lyase 1 activating enzyme [Vibrio
           angustum S14]
 gi|90440172|gb|EAS65353.1| putative pyruvate formate-lyase 1 activating enzyme [Vibrio
           angustum S14]
          Length = 246

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 52/160 (32%), Gaps = 35/160 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT         G    VD+L    +      
Sbjct: 25  VF--LQGC-----------LMRCKYCHNRDT----WDTHGGREATVDELMHEAKSYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWICVS 134
              G     +GGE +LQ +      +A    G    ++TNG     T    + +D     
Sbjct: 68  NSSGGGVTASGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRKHTDVVDEVLD----- 122

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
                DL +   +++     Q  V   N    DF R+  Q
Sbjct: 123 ---ATDLVMLDLKQMDDNIHQNLVGVSNKRVLDFARYLHQ 159


>gi|331665608|ref|ZP_08366506.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
           (Formate-C-acetyltransferase-activating enzyme 2)
           [Escherichia coli TA143]
 gi|331057293|gb|EGI29283.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
           (Formate-C-acetyltransferase-activating enzyme 2)
           [Escherichia coli TA143]
          Length = 292

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195


>gi|294674223|ref|YP_003574839.1| radical SAM domain-containing protein [Prevotella ruminicola 23]
 gi|294471815|gb|ADE81204.1| radical SAM domain protein [Prevotella ruminicola 23]
          Length = 278

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           C L    +       C F      G+       Y  D+L  ++        +       +
Sbjct: 66  CKLCQRNKGSNSITACPF------GVAEETSRDYLPDELFHILLRDQSLYIESNGGITFS 119

Query: 92  GGEPLLQ--VDVPLIQALNKRGFEIAVETN 119
           GGEPL Q    V +++ L ++G  IA+ET+
Sbjct: 120 GGEPLFQSENLVSVLELLKEKGLHIALETS 149


>gi|319775559|ref|YP_004138047.1| pyruvate-formate lyase-activating enzyme [Haemophilus influenzae
           F3047]
 gi|329122398|ref|ZP_08250985.1| [formate-C-acetyltransferase]-activating enzyme [Haemophilus
           aegyptius ATCC 11116]
 gi|317450150|emb|CBY86364.1| Predicted pyruvate-formate lyase-activating enzyme [Haemophilus
           influenzae F3047]
 gi|327473680|gb|EGF19099.1| [formate-C-acetyltransferase]-activating enzyme [Haemophilus
           aegyptius ATCC 11116]
          Length = 262

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 71/194 (36%), Gaps = 43/194 (22%)

Query: 3   LYSIKEIFLTL-----------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD 51
           + ++ EIF+ L           QG      R ++F     C L            C +C 
Sbjct: 1   MTALSEIFVPLHRIIPFSNVEGQG-----NRSSIF--LQSCKL-----------NCLYCH 42

Query: 52  TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109
                 + T+  +         + EQ +      R   ++GGEP +     VPL +AL  
Sbjct: 43  NPETIPRYTENAKLVS---LQYLYEQVMEAVPFIRGVTVSGGEPTIHHKKLVPLFKALRS 99

Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ------ELKL---VFPQVNVSP 160
           +G    ++++G  E  +    I V+ K   DLK +G        + K    + PQ  +  
Sbjct: 100 QGLTCYLDSSGFFEFDRVCSLIDVTDKFLFDLKGEGIGLQTLCFDRKNQAGIVPQQVILE 159

Query: 161 ENYIGFDFERFSLQ 174
             +I  D    +LQ
Sbjct: 160 RLHIKNDKLERNLQ 173


>gi|83745550|ref|ZP_00942608.1| Pyruvate formate-lyase activating enzyme [Ralstonia solanacearum
           UW551]
 gi|83727627|gb|EAP74747.1| Pyruvate formate-lyase activating enzyme [Ralstonia solanacearum
           UW551]
          Length = 244

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 28/128 (21%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G++A  VF   +GC             +C +C          +    +  Q+   ++ + 
Sbjct: 42  GQLAAVVFI--AGCP-----------WRCHYC---HNPHLQARERHLHWTQVMAFLQSRR 85

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
              +      V +GGEPL +  +P LI A+   GF+  + T G            +DW+ 
Sbjct: 86  ALLDA----VVFSGGEPLSEPRLPQLIAAVRALGFKTGLHTAGIYPARLAAVLPMLDWVG 141

Query: 133 VSPKAGCD 140
           +  K    
Sbjct: 142 LDIKTTAS 149


>gi|268323802|emb|CBH37390.1| conserved hypothetical protein, radical SAM superfamily [uncultured
           archaeon]
          Length = 230

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 28/105 (26%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF    GCN            +C +C               +    A  I E  I G  +
Sbjct: 22  VF--TQGCNF-----------KCPYC---------HNPELVDPKLFAQPIPEADIFGFLQ 59

Query: 85  GRY-----CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
            R        +TGGEP LQ D+    + +    F + ++TNG+  
Sbjct: 60  TRRGKLDAVEITGGEPTLQPDLIDFTKKIKSLNFLVKLDTNGSNP 104


>gi|262404211|ref|ZP_06080766.1| pyruvate formate-lyase activating enzyme [Vibrio sp. RC586]
 gi|262349243|gb|EEY98381.1| pyruvate formate-lyase activating enzyme [Vibrio sp. RC586]
          Length = 246

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 54/156 (34%), Gaps = 27/156 (17%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT         G    V+++    +      
Sbjct: 25  VF--LQGC-----------LFRCKYCHNRDT----WDTHTGREVTVEEIIKEAKSYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI-EPPQGIDWICVSPKAG 138
              G     +GGE +LQ +    L ++    G    ++TNG I +    ID +       
Sbjct: 68  NASGGGITCSGGEAMLQPEFVRDLFRSAKAEGIHTCLDTNGYIRKFTPVIDEVL----EV 123

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
            DL +   +++     Q  +   N    DF R+  Q
Sbjct: 124 TDLVMLDIKQMDDEIHQDLIGVSNKRTLDFARYLHQ 159


>gi|237720844|ref|ZP_04551325.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 2_2_4]
 gi|229449679|gb|EEO55470.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 2_2_4]
          Length = 205

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 21/112 (18%)

Query: 11  LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL 70
           LT+ GEG           F GC L           +C++C              Y+ +QL
Sbjct: 14  LTIDGEGVTTLVA-----FHGCPL-----------RCKYCLNPTSLQPDGVWESYDCNQL 57

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI---QALNKRGFEIAVETN 119
            + + +  +            GGEPLLQ     I   + L    + I VET+
Sbjct: 58  YEEVRKDELYFLASCGGVTFGGGEPLLQS--EFIRQFRQLCGPEWRITVETS 107


>gi|206900847|ref|YP_002251405.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Dictyoglomus thermophilum H-6-12]
 gi|206739950|gb|ACI19008.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Dictyoglomus thermophilum H-6-12]
          Length = 228

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 36/167 (21%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G  +  +F    GCN       +      R            K G+Y+ + + + I+ + 
Sbjct: 16  GIPSFVIF--TQGCNFKCPFCHNPELISQR------------KKGQYSEEFILEEIDRRR 61

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-------PPQGIDW 130
                  +  V+TGGEP LQ D+P  +  + K+   I ++TNG+             +D+
Sbjct: 62  KL----IKGVVITGGEPTLQEDLPSFLFKIKKKRLLIKLDTNGSNPKMLIEIIKSNLVDY 117

Query: 131 ICVSPKAGCDLKIKGG----QE----LKLVFPQVNVSPENYIGFDFE 169
           + +  K       K       E    LK +F  + +  EN I F+  
Sbjct: 118 VAMDFKTSPSKYHKAIGLTENETKKYLKNIFESLKILRENKIKFEIR 164


>gi|15896051|ref|NP_349400.1| MoaA/NirJ family Fe-S oxidoreductase [Clostridium acetobutylicum
           ATCC 824]
 gi|15025836|gb|AAK80740.1|AE007777_4 MoaA/NirJ family Fe-S oxidoreductase [Clostridium acetobutylicum
           ATCC 824]
 gi|325510205|gb|ADZ21841.1| MoaA/NirJ family Fe-S oxidoreductase [Clostridium acetobutylicum EA
           2018]
          Length = 394

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C+ C   + G  G T     + ++   LI +     + +    + 
Sbjct: 47  CNL-----------RCKHC---YAGSDGKTYKDELSTEEAYSLIADL---SDFKVPVIIF 89

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           +GGEPL++ D+  LI+   K      + TNGT+
Sbjct: 90  SGGEPLIRKDIFELIEFAKKNNIRSTLSTNGTL 122


>gi|300868798|ref|ZP_07113406.1| Pyruvate formate-lyase activating enzyme [Oscillatoria sp. PCC
           6506]
 gi|300333208|emb|CBN58598.1| Pyruvate formate-lyase activating enzyme [Oscillatoria sp. PCC
           6506]
          Length = 247

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 18/100 (18%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
            RF    SGC L      +     CR+            G + +VD+L + I++      
Sbjct: 25  IRFIIFTSGCPLRCLYCSNPD---CRY---------LENGKKVSVDELIEEIQKYKSYMN 72

Query: 83  KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
             G    ++GGE L Q      + +     G   A++T+G
Sbjct: 73  SSGGGVTISGGEALFQPHFVTEIFKRCRALGIHTALDTSG 112


>gi|292669987|ref|ZP_06603413.1| pyruvate formate-lyase-activating enzyme [Selenomonas noxia ATCC
           43541]
 gi|292648399|gb|EFF66371.1| pyruvate formate-lyase-activating enzyme [Selenomonas noxia ATCC
           43541]
          Length = 256

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 31/128 (24%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
            E F ++ G G          RF     GC             +C++C           G
Sbjct: 15  TESFGSVDGPG---------IRFIVFMQGC-----------RYRCQYCHNPETWT-AEGG 53

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
              + +++           +K G    ++GGEPLLQ++    L +   ++G   A++T G
Sbjct: 54  YEASPEEIFQQAMRYRPYWKKTGG-ITVSGGEPLLQLEFVTELFRLAKEKGVTTAIDTAG 112

Query: 121 ---TIEPP 125
              T E P
Sbjct: 113 EPFTHEEP 120


>gi|291280013|ref|YP_003496848.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Deferribacter desulfuricans SSM1]
 gi|290754715|dbj|BAI81092.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Deferribacter desulfuricans SSM1]
          Length = 227

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 22/97 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF   SGCNL            CRFC       +     +   D+  D  E   +    +
Sbjct: 22  VFI--SGCNLL-----------CRFC-----YNRELVLKKLVKDKTEDFFEYLIL---NK 60

Query: 85  GRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
            +Y  +TGGEPL     +   + L K G  I ++TNG
Sbjct: 61  IKYVAITGGEPLFHPHILDFFEKLKKLGVSIKLDTNG 97


>gi|119897898|ref|YP_933111.1| molybdenum cofactor biosynthesis protein A [Azoarcus sp. BH72]
 gi|119670311|emb|CAL94224.1| molybdenum cofactor biosynthesis protein A [Azoarcus sp. BH72]
          Length = 357

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 22/144 (15%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +   +G   + +++  +       G ++ R   +TGGE
Sbjct: 43  DRCNFRCVYCMPREVFDKDYPFL--PRGQLLSFEEILRVARLFVARGVRKIR---ITGGE 97

Query: 95  PLLQVDVP-LIQALNKR-GFEIAVETNGTIEP-------PQGIDWICVSPKAGCDLKIKG 145
           PLL+ D+  L++ L    G E+ + TNG + P         G+  + VS  A  D   + 
Sbjct: 98  PLLRKDIERLVEMLAALDGVELTLTTNGVLLPRLAKKLRDAGLHRVTVSLDALDDATFRR 157

Query: 146 GQELKLVFPQV--NVSPENYIGFD 167
             +      +V   ++     GF+
Sbjct: 158 MNDADYPVERVLEGIAAARDAGFE 181


>gi|49176447|ref|NP_418387.3| pyruvate formate lyase II activase [Escherichia coli str. K-12
           substr. MG1655]
 gi|89110078|ref|AP_003858.1| pyruvate formate lyase II activase [Escherichia coli str. K-12
           substr. W3110]
 gi|170083421|ref|YP_001732741.1| pyruvate formate lyase II activase [Escherichia coli str. K-12
           substr. DH10B]
 gi|238903017|ref|YP_002928813.1| pyruvate formate lyase II activase [Escherichia coli BW2952]
 gi|256026010|ref|ZP_05439875.1| pyruvate formate lyase II activase [Escherichia sp. 4_1_40B]
 gi|307140651|ref|ZP_07500007.1| pyruvate formate lyase II activase [Escherichia coli H736]
 gi|585665|sp|P32675|PFLC_ECOLI RecName: Full=Pyruvate formate-lyase 2-activating enzyme; AltName:
           Full=Formate-C-acetyltransferase-activating enzyme 2;
           AltName: Full=PFL-activating enzyme 2
 gi|1790389|gb|AAC76934.1| pyruvate formate lyase II activase [Escherichia coli str. K-12
           substr. MG1655]
 gi|85676109|dbj|BAE77359.1| pyruvate formate lyase II activase [Escherichia coli str. K12
           substr. W3110]
 gi|169891256|gb|ACB04963.1| pyruvate formate lyase II activase [Escherichia coli str. K-12
           substr. DH10B]
 gi|238863360|gb|ACR65358.1| pyruvate formate lyase II activase [Escherichia coli BW2952]
 gi|260451212|gb|ACX41634.1| glycyl-radical enzyme activating protein family [Escherichia coli
           DH1]
 gi|315138517|dbj|BAJ45676.1| pyruvate formate lyase II activase [Escherichia coli DH1]
          Length = 292

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195


>gi|309704376|emb|CBJ03725.1| pyruvate formate-lyase 2 activating enzyme [Escherichia coli ETEC
           H10407]
          Length = 292

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L   G   A+ET G
Sbjct: 139 LQRLRLWGVSCAIETAG 155


>gi|331675446|ref|ZP_08376196.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
           (Formate-C-acetyltransferase-activating enzyme 2)
           [Escherichia coli TA280]
 gi|284924053|emb|CBG37152.1| pyruvate formate-lyase 2 activating enzyme [Escherichia coli 042]
 gi|331067506|gb|EGI38911.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
           (Formate-C-acetyltransferase-activating enzyme 2)
           [Escherichia coli TA280]
          Length = 292

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195


>gi|289193018|ref|YP_003458959.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
 gi|288939468|gb|ADC70223.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
          Length = 467

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C+ C   +           N ++   +++   I G         +
Sbjct: 123 CNL-----------RCKHC---YANAGKPLEDELNTEEAKKVVD---ILGNAGVVALAFS 165

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPL++ D+  LI  +     ++++ TNGT+
Sbjct: 166 GGEPLMRKDLFELIDRVKDYDMQVSIATNGTL 197


>gi|256021655|ref|ZP_05435520.1| pyruvate formate lyase II activase [Shigella sp. D9]
          Length = 292

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195


>gi|330908275|gb|EGH36794.1| pyruvate formate-lyase activating enzyme [Escherichia coli AA86]
          Length = 279

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 11  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 66  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L   G   A+ET G
Sbjct: 126 LQRLRLWGVSCAIETAG 142


>gi|315651793|ref|ZP_07904797.1| pyruvate formate-lyase activating enzyme [Eubacterium saburreum DSM
           3986]
 gi|315485923|gb|EFU76301.1| pyruvate formate-lyase activating enzyme [Eubacterium saburreum DSM
           3986]
          Length = 248

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 23/101 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC +           +C+FC   DT        +   +   ++ D         
Sbjct: 25  VFV--QGCPM-----------RCQFCHNPDT----WSTDENQSFTAKEVFDKAIRYKPY- 66

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
            K+     ++GGEPLLQ+D    L +   + G    ++T G
Sbjct: 67  WKDNGGITVSGGEPLLQIDFLTELFRLCKENGVNTCLDTAG 107


>gi|300926218|ref|ZP_07142023.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 182-1]
 gi|300417753|gb|EFK01064.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 182-1]
 gi|323161239|gb|EFZ47153.1| glycyl-radical enzyme activating family protein [Escherichia coli
           E128010]
 gi|324019663|gb|EGB88882.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 117-3]
          Length = 279

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 11  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 66  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 182


>gi|59712198|ref|YP_204974.1| pyruvate formate lyase-activating enzyme 1 [Vibrio fischeri ES114]
 gi|59480299|gb|AAW86086.1| pyruvate formate lyase activating enzyme 1 [Vibrio fischeri ES114]
          Length = 245

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 53/161 (32%), Gaps = 28/161 (17%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C +C   DT         G    V +L +  +      
Sbjct: 24  VF--LQGC-----------LMRCMYCHNRDT----WDTHDGKEVTVAELIEEAKSYRHFM 66

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQG-IDWICVSPKAG 138
           +  G     +GGE +LQ +      +A    G    ++TNG I      ID +       
Sbjct: 67  KASGGGITCSGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRKHTDVIDEVL----EA 122

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
            DL +   +++K    +  +   N    DF R  L  +   
Sbjct: 123 SDLVMLDLKQMKDDVHKEFIGVSNTRVLDFAR-YLHKIGQK 162


>gi|46581407|ref|YP_012215.1| radical SAM domain-containing protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450829|gb|AAS97475.1| radical SAM domain protein [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 624

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 43/109 (39%), Gaps = 20/109 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C +C D D  G QG K    ++D +  L  E    G K     + 
Sbjct: 329 CNL-----------ACVWCSDKDLRGRQGVK-ATLSLDTVRRLTHELREGGTKG--IVIE 374

Query: 91  TGGEPLLQVDVPLIQA-LNKRGFEIAVETNGTIEPPQGI----DWICVS 134
            GGEP L  D   I A +   G    + TNG +  P  +    DW+ VS
Sbjct: 375 GGGEPTLHPDFAAIVACITDAGMGAGLITNGVVTLPPDVLRRLDWVRVS 423


>gi|319941886|ref|ZP_08016207.1| ribonucleotide reductase activating protein [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804539|gb|EFW01409.1| ribonucleotide reductase activating protein [Sutterella
           wadsworthensis 3_1_45B]
          Length = 264

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 21/119 (17%)

Query: 26  FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F    GC             +C +C   ++  +       + D     +EE         
Sbjct: 54  FV--QGCP-----------WRCIYCQNPWMQPKDFDPS-LSHDSWH-RLEELLKRRRGLL 98

Query: 86  RYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAG 138
              V +GGEP +   +P  +  +   GF++ + T G I          +DW+ +  KA 
Sbjct: 99  DAVVFSGGEPTVDPALPDAVARVKAMGFKVGLHTGGIIPARLARVLPMLDWVGIDVKAP 157


>gi|319760860|ref|YP_004124797.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Alicycliphilus denitrificans BC]
 gi|330822765|ref|YP_004386068.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Alicycliphilus denitrificans K601]
 gi|317115421|gb|ADU97909.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Alicycliphilus denitrificans BC]
 gi|329308137|gb|AEB82552.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Alicycliphilus denitrificans K601]
          Length = 226

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 42/127 (33%), Gaps = 26/127 (20%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           GR+A  VFC   GC             +C +C                    AD +++  
Sbjct: 25  GRLAAVVFC--QGCP-----------WRCGYC----HNTGLLDAATPTAHAWAD-VQQLL 66

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
                     V +GGEP LQ  +P  +  +   GF   + T G            +DW+ 
Sbjct: 67  HARRGLLDGVVFSGGEPTLQAGLPDALARVRAMGFATGLHTAGMYPERLATLLPLLDWVG 126

Query: 133 VSPKAGC 139
           +  KA  
Sbjct: 127 LDIKAPL 133


>gi|145299597|ref|YP_001142438.1| pyruvate formate lyase-activating enzyme 1 [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142852369|gb|ABO90690.1| pyruvate formate-lyase 1 activating enzyme [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 261

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G    V +L   I     
Sbjct: 35  IRFIVFMQGC-----------LMRCKYCHNRDT----WDTQGGREVTVPELMSDITSYRH 79

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                G     +GGE +LQ +    L  A  ++G    ++TNG
Sbjct: 80  FMNASGGGVTASGGEAMLQQNFIAELFAACKEKGVHTCLDTNG 122


>gi|94265921|ref|ZP_01289648.1| Radical SAM [delta proteobacterium MLMS-1]
 gi|93453545|gb|EAT03950.1| Radical SAM [delta proteobacterium MLMS-1]
          Length = 343

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104
           +C +C   +            + ++  ++++    G +  +  VL GGEPLL  D+  ++
Sbjct: 40  RCIYC---YAESGLPLEQELTLSEIKQVVDQAAGLGAR--KVVVLGGGEPLLYPDIFTVL 94

Query: 105 QALNKRGFEIAVETNGTIEPPQ 126
             +  +G +  + TNGT+  P 
Sbjct: 95  DYILNKGMKADIFTNGTLITPA 116


>gi|89900261|ref|YP_522732.1| molybdenum cofactor biosynthesis protein A [Rhodoferax
           ferrireducens T118]
 gi|89344998|gb|ABD69201.1| GTP cyclohydrolase subunit MoaA [Rhodoferax ferrireducens T118]
          Length = 388

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 56/142 (39%), Gaps = 25/142 (17%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +        + +++  + +     G ++ R   LTGGE
Sbjct: 56  DRCNFRCNYCMPKEIFDKDYAYL--PHKALLSFEEITRIAKVFVAHGVQKIR---LTGGE 110

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEPPQGIDW-------ICVSPKAGCD 140
           PLL+ ++  LI+ L        +  +I + TNG++   +  D        + VS     D
Sbjct: 111 PLLRKNIERLIEQLAALRTPQGQALDITLTTNGSLLARKARDLKAAGLQRVTVSLDGLDD 170

Query: 141 LKIKGGQELKLVFPQVNVSPEN 162
              +   ++      V    E 
Sbjct: 171 AVFRRMNDVDFPVADVLAGIEA 192


>gi|332105248|gb|EGJ08594.1| pyruvate formate-lyase 2 activating enzyme [Shigella sp. D9]
          Length = 315

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 47  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 101

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 102 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 161

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 162 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 218


>gi|300916995|ref|ZP_07133693.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 115-1]
 gi|301023724|ref|ZP_07187467.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 69-1]
 gi|300396908|gb|EFJ80446.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 69-1]
 gi|300415747|gb|EFJ99057.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 115-1]
 gi|325499308|gb|EGC97167.1| pyruvate formate lyase activating enzyme [Escherichia fergusonii
           ECD227]
          Length = 279

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 11  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 66  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 182


>gi|281603342|gb|ADA76326.1| Glycyl-radical enzyme activating protein family [Shigella flexneri
           2002017]
          Length = 292

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195


>gi|262194521|ref|YP_003265730.1| radical SAM protein [Haliangium ochraceum DSM 14365]
 gi|262077868|gb|ACY13837.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365]
          Length = 327

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 15/86 (17%)

Query: 88  CVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
             +TGGEPLL    V L+ AL++ G    + T+GT      ID +      G  L   G 
Sbjct: 81  VAITGGEPLLHDGAVALVAALSELGLRTVLFTSGTR-----IDEL------GEALVQAGL 129

Query: 147 QELKLVFPQVNVSPENYIGFDFERFS 172
            EL+  F +    P       FER  
Sbjct: 130 DELRFSFNEF---PYAMSDIAFERLW 152


>gi|218707579|ref|YP_002415098.1| pyruvate formate lyase II activase [Escherichia coli UMN026]
 gi|293407573|ref|ZP_06651492.1| pyruvate formate-lyase activating enzyme [Escherichia coli
           FVEC1412]
 gi|298383321|ref|ZP_06992914.1| pyruvate formate lyase activating enzyme [Escherichia coli
           FVEC1302]
 gi|218434676|emb|CAR15609.1| pyruvate formate lyase II activase [Escherichia coli UMN026]
 gi|291425490|gb|EFE98529.1| pyruvate formate-lyase activating enzyme [Escherichia coli
           FVEC1412]
 gi|298276355|gb|EFI17875.1| pyruvate formate lyase activating enzyme [Escherichia coli
           FVEC1302]
          Length = 292

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L   G   A+ET G
Sbjct: 139 LQRLRLWGVSCAIETAG 155


>gi|254039214|ref|ZP_04873264.1| pyruvate formate-lyase 2 activating enzyme [Escherichia sp. 1_1_43]
 gi|331644689|ref|ZP_08345808.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
           (Formate-C-acetyltransferase-activating enzyme 2)
           [Escherichia coli H736]
 gi|396299|gb|AAC43058.1| ORF_o315 [Escherichia coli str. K-12 substr. MG1655]
 gi|226838650|gb|EEH70679.1| pyruvate formate-lyase 2 activating enzyme [Escherichia sp. 1_1_43]
 gi|331036151|gb|EGI08387.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
           (Formate-C-acetyltransferase-activating enzyme 2)
           [Escherichia coli H736]
          Length = 315

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 47  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 101

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 102 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 161

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 162 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 218


>gi|146283853|ref|YP_001174006.1| heme d1 biosynthesis protein NirJ [Pseudomonas stutzeri A1501]
 gi|71841660|gb|AAZ43114.1| NirJ [Pseudomonas stutzeri A1501]
 gi|145572058|gb|ABP81164.1| heme d1 biosynthesis protein NirJ [Pseudomonas stutzeri A1501]
          Length = 393

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 14/111 (12%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            +       R +  CR C               +  +   +I++    G    R  +L+G
Sbjct: 30  PVVIWNLLRRCNLTCRHC--YATSADSEFRDELDTAEALRVIDDLHEAG---VRVLILSG 84

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGI--------DWICVS 134
           GEPLL+ D+  L      +GF +A+ TNGT+     I        D++ +S
Sbjct: 85  GEPLLRGDIFQLADYARDKGFFVALSTNGTLIDEGNIARIAAARFDYVGIS 135


>gi|323182054|gb|EFZ67464.1| glycyl-radical enzyme activating family protein [Escherichia coli
           1357]
          Length = 279

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 11  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 66  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 182


>gi|313204596|ref|YP_004043253.1| radical sam domain protein [Paludibacter propionicigenes WB4]
 gi|312443912|gb|ADQ80268.1| Radical SAM domain protein [Paludibacter propionicigenes WB4]
          Length = 416

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQ 105
           C +C   + G    K    ++    D+I +      +   + V+TGGEPL+    V  I 
Sbjct: 83  CPYC---YKGNAH-KAKYMDMSTYCDIISKVSSINSEC--HFVITGGEPLMHPLFVEFID 136

Query: 106 ALNKRGFEIAVETNGTI 122
            L KR    ++ TNG++
Sbjct: 137 FLEKRKNSYSILTNGSL 153


>gi|15804548|ref|NP_290589.1| pyruvate formate lyase II activase [Escherichia coli O157:H7
           EDL933]
 gi|157163429|ref|YP_001460747.1| pyruvate formate lyase II activase [Escherichia coli HS]
 gi|168748741|ref|ZP_02773763.1| glycyl-radical enzyme activating protein family [Escherichia coli
           O157:H7 str. EC4113]
 gi|168761656|ref|ZP_02786663.1| glycyl-radical enzyme activating protein family [Escherichia coli
           O157:H7 str. EC4501]
 gi|168775203|ref|ZP_02800210.1| glycyl-radical enzyme activating protein family [Escherichia coli
           O157:H7 str. EC4196]
 gi|168799457|ref|ZP_02824464.1| glycyl-radical enzyme activating protein family [Escherichia coli
           O157:H7 str. EC508]
 gi|188493956|ref|ZP_03001226.1| glycyl-radical enzyme activating protein family [Escherichia coli
           53638]
 gi|194438344|ref|ZP_03070435.1| glycyl-radical enzyme activating protein family [Escherichia coli
           101-1]
 gi|195937602|ref|ZP_03082984.1| pyruvate formate lyase II activase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208813297|ref|ZP_03254626.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7
           str. EC4045]
 gi|208820425|ref|ZP_03260745.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7
           str. EC4042]
 gi|253775409|ref|YP_003038240.1| pyruvate formate lyase II activase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163902|ref|YP_003047010.1| pyruvate formate lyase II activase [Escherichia coli B str. REL606]
 gi|254795957|ref|YP_003080794.1| pyruvate formate lyase II activase [Escherichia coli O157:H7 str.
           TW14359]
 gi|260870672|ref|YP_003237074.1| pyruvate formate lyase II activase [Escherichia coli O111:H- str.
           11128]
 gi|261226424|ref|ZP_05940705.1| pyruvate formate lyase II activase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256824|ref|ZP_05949357.1| pyruvate formate lyase II activase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285372|ref|YP_003502190.1| Glycyl-radical enzyme activating protein family [Escherichia coli
           O55:H7 str. CB9615]
 gi|293472270|ref|ZP_06664680.1| pyruvate formate lyase activating enzyme [Escherichia coli B088]
 gi|12518871|gb|AAG59154.1|AE005626_9 probable pyruvate formate lyase activating enzyme 2 [Escherichia
           coli O157:H7 str. EDL933]
 gi|13364357|dbj|BAB38304.1| probable pyruvate formate lyase activating enzyme 2 [Escherichia
           coli O157:H7 str. Sakai]
 gi|157069109|gb|ABV08364.1| glycyl-radical enzyme activating protein family [Escherichia coli
           HS]
 gi|187769121|gb|EDU32965.1| glycyl-radical enzyme activating protein family [Escherichia coli
           O157:H7 str. EC4196]
 gi|188016774|gb|EDU54896.1| glycyl-radical enzyme activating protein family [Escherichia coli
           O157:H7 str. EC4113]
 gi|188489155|gb|EDU64258.1| glycyl-radical enzyme activating protein family [Escherichia coli
           53638]
 gi|189367890|gb|EDU86306.1| glycyl-radical enzyme activating protein family [Escherichia coli
           O157:H7 str. EC4501]
 gi|189378026|gb|EDU96442.1| glycyl-radical enzyme activating protein family [Escherichia coli
           O157:H7 str. EC508]
 gi|194422781|gb|EDX38777.1| glycyl-radical enzyme activating protein family [Escherichia coli
           101-1]
 gi|208734574|gb|EDZ83261.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7
           str. EC4045]
 gi|208740548|gb|EDZ88230.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7
           str. EC4042]
 gi|209752068|gb|ACI74341.1| PTS system fructose-like IIB component 2 [Escherichia coli]
 gi|209752070|gb|ACI74342.1| PTS system fructose-like IIB component 2 [Escherichia coli]
 gi|209752072|gb|ACI74343.1| PTS system fructose-like IIB component 2 [Escherichia coli]
 gi|209752074|gb|ACI74344.1| PTS system fructose-like IIB component 2 [Escherichia coli]
 gi|209752076|gb|ACI74345.1| PTS system fructose-like IIB component 2 [Escherichia coli]
 gi|242379488|emb|CAQ34303.1| probable pyruvate formate lyase 2 activating enzyme [Escherichia
           coli BL21(DE3)]
 gi|253326453|gb|ACT31055.1| glycyl-radical enzyme activating protein family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975803|gb|ACT41474.1| pyruvate formate lyase II activase [Escherichia coli B str. REL606]
 gi|253979960|gb|ACT45630.1| pyruvate formate lyase II activase [Escherichia coli BL21(DE3)]
 gi|254595357|gb|ACT74718.1| pyruvate formate lyase II activase [Escherichia coli O157:H7 str.
           TW14359]
 gi|257767028|dbj|BAI38523.1| pyruvate formate lyase II activase [Escherichia coli O111:H- str.
           11128]
 gi|290765245|gb|ADD59206.1| Glycyl-radical enzyme activating protein family [Escherichia coli
           O55:H7 str. CB9615]
 gi|291321364|gb|EFE60804.1| pyruvate formate lyase activating enzyme [Escherichia coli B088]
 gi|320190946|gb|EFW65596.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7
           str. EC1212]
 gi|320639126|gb|EFX08762.1| pyruvate formate lyase II activase [Escherichia coli O157:H7 str.
           G5101]
 gi|320644518|gb|EFX13579.1| pyruvate formate lyase II activase [Escherichia coli O157:H- str.
           493-89]
 gi|320649842|gb|EFX18357.1| pyruvate formate lyase II activase [Escherichia coli O157:H- str. H
           2687]
 gi|320655192|gb|EFX23141.1| pyruvate formate lyase II activase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660816|gb|EFX28266.1| pyruvate formate lyase II activase [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320665934|gb|EFX32960.1| pyruvate formate lyase II activase [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323943631|gb|EGB39738.1| glycyl-radical enzyme activating protein family protein
           [Escherichia coli H120]
 gi|323959279|gb|EGB54940.1| glycyl-radical enzyme activating protein family protein
           [Escherichia coli H489]
 gi|323969704|gb|EGB64988.1| glycyl-radical enzyme activating protein family protein
           [Escherichia coli TA007]
 gi|326338030|gb|EGD61860.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7
           str. 1044]
 gi|326342675|gb|EGD66448.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7
           str. 1125]
          Length = 292

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195


>gi|315497758|ref|YP_004086562.1| radical sam domain protein [Asticcacaulis excentricus CB 48]
 gi|315415770|gb|ADU12411.1| Radical SAM domain protein [Asticcacaulis excentricus CB 48]
          Length = 466

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 14/103 (13%)

Query: 31  GCNLWSGREQDRLSAQCR-----------FCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G   D     C             C T +     + G   +++++ + + +  +
Sbjct: 80  GCPYDCGLCSDHEQHSCVSIVELTDRCNLTCPTCYASSSPSHGRHRSLEEI-ETMLDIVV 138

Query: 80  TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETNG 120
             E E     L+GGEP L  D   ++     R    + + TNG
Sbjct: 139 ASEGEPDVVQLSGGEPTLHPDFFAVMDMAKARPIKHLMINTNG 181


>gi|331685696|ref|ZP_08386279.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
           (Formate-C-acetyltransferase-activating enzyme 2)
           [Escherichia coli H299]
 gi|331077167|gb|EGI48382.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
           (Formate-C-acetyltransferase-activating enzyme 2)
           [Escherichia coli H299]
          Length = 292

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L   G   A+ET G
Sbjct: 139 LQRLRLWGVSCAIETAG 155


>gi|34557098|ref|NP_906913.1| putative radical-activating enzyme [Wolinella succinogenes DSM
           1740]
 gi|34482813|emb|CAE09813.1| PUTATIVE RADICAL-ACTIVATING ENZYME [Wolinella succinogenes]
          Length = 223

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 26/116 (22%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           FSGCNL            C +C   +      + G+ +++ L   +  +    E      
Sbjct: 27  FSGCNL-----------ACSYC---YNPEFLKESGKIDLEGLLSFLRSRVGLLEG----V 68

Query: 89  VLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIEP-------PQGIDWICVSPK 136
           V +GGE  L   +PL ++ +   GF+I ++TNGT             +D++ +  K
Sbjct: 69  VFSGGEATLFAGLPLWMEEVRSLGFKIKLDTNGTNPAMLKELLQKGYLDYVAMDFK 124


>gi|323189621|gb|EFZ74900.1| glycyl-radical enzyme activating family protein [Escherichia coli
           RN587/1]
          Length = 279

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 11  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 66  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATLF 125

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 182


>gi|107022977|ref|YP_621304.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           cenocepacia AU 1054]
 gi|116686780|ref|YP_840027.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           cenocepacia HI2424]
 gi|105893166|gb|ABF76331.1| GTP cyclohydrolase subunit MoaA [Burkholderia cenocepacia AU 1054]
 gi|116652495|gb|ABK13134.1| GTP cyclohydrolase subunit MoaA [Burkholderia cenocepacia HI2424]
          Length = 374

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 24/145 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN   G    R S        D+  +  +   R +  QL  +       G ++ R   +T
Sbjct: 52  CNFRCGYCMPRESFGA-----DYAFMPSS--ERLSFAQLEKIARAFTSLGVEKIR---IT 101

Query: 92  GGEPLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKA 137
           GGEPLL+ ++  LI+ L        +  EIA+ TNG++           G+  + VS  A
Sbjct: 102 GGEPLLRRNLEALIERLAALTTVDGKPVEIALTTNGSLLAAKARALRDAGLSRVTVSLDA 161

Query: 138 GCDLKIKGGQELKLVFPQVNVSPEN 162
             D   +   +  +   +V    E 
Sbjct: 162 LDDAVFRRMSDADVPVARVLAGIEA 186


>gi|315654547|ref|ZP_07907453.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Mobiluncus curtisii ATCC 51333]
 gi|315491011|gb|EFU80630.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Mobiluncus curtisii ATCC 51333]
          Length = 266

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 49/150 (32%), Gaps = 37/150 (24%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
             +VF    GC              C +C  +   I       Y+   L +L+  +    
Sbjct: 35  VASVF--LQGCP-----------WNCGYC-QNVAIIDPRAPAGYHEADLWELLGRRRGLL 80

Query: 82  EKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICV 133
           +      V +GGEP  Q   VP  Q +   GF + + T G              +DW+ +
Sbjct: 81  DG----VVFSGGEPTRQAALVPAAQRVRDLGFLVGLHTGGAYPKRLEQLLDAGLLDWVGL 136

Query: 134 SPKAGCDLKIKGGQELKLVFPQVNVSPENY 163
             K            L   +PQV   P+ +
Sbjct: 137 DVKG-----------LAQNYPQVVGRPQAH 155


>gi|240102908|ref|YP_002959217.1| putative Fe-S oxidoreductase, containing Elp3 domain [Thermococcus
           gammatolerans EJ3]
 gi|239910462|gb|ACS33353.1| Predicted Fe-S oxidoreductase, containing Elp3 domain [Thermococcus
           gammatolerans EJ3]
          Length = 558

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 57/153 (37%), Gaps = 16/153 (10%)

Query: 28  RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
           R +G  L      +  + +C+ C   +           ++++  +L+++    G      
Sbjct: 149 RLAGPFLIVWNFTNMCNFRCKHC---YQRADRPLPSELSLEEKLNLVDQLDKAGVAA--- 202

Query: 88  CVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG-TI--------EPPQGIDWICVSPKA 137
             ++GGEP +    + +++ L+ RG   +V TNG T             GI ++ VS  +
Sbjct: 203 VAISGGEPTIHPHFLRIVRELSSRGIHTSVATNGWTFARKEELEKAVKAGIKYVEVSVDS 262

Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
               K    + +   +     + EN +      
Sbjct: 263 AKPEKHDEFRGIPGAWEHAVKALENAVELGLSH 295


>gi|20094510|ref|NP_614357.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
 gi|19887619|gb|AAM02287.1| Predicted Fe-S oxidoreductase [Methanopyrus kandleri AV19]
          Length = 499

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 19/106 (17%)

Query: 31  GCNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIE 75
           GC L  G                 +R +  C  C   F   +        +++Q+ ++++
Sbjct: 77  GCPLDCGLCPCHESTTALGIIDVTNRCNMNCPVC---FANAEAKGYVYEPSLEQIEEMLD 133

Query: 76  EQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
                           GGEPL++ D+  ++ A ++RGF + + TNG
Sbjct: 134 LLRSERPVPAPAVQFAGGEPLVREDIVEIVAAADERGFHVQIATNG 179


>gi|300948266|ref|ZP_07162383.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 116-1]
 gi|300954683|ref|ZP_07167122.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 175-1]
 gi|301024098|ref|ZP_07187811.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 196-1]
 gi|301645143|ref|ZP_07245101.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 146-1]
 gi|299880553|gb|EFI88764.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 196-1]
 gi|300318353|gb|EFJ68137.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 175-1]
 gi|300452209|gb|EFK15829.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 116-1]
 gi|301076570|gb|EFK91376.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 146-1]
 gi|315617748|gb|EFU98353.1| glycyl-radical enzyme activating family protein [Escherichia coli
           3431]
          Length = 279

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 11  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 66  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 182


>gi|296242049|ref|YP_003649536.1| radical SAM domain-containing protein [Thermosphaera aggregans DSM
           11486]
 gi|296094633|gb|ADG90584.1| Radical SAM domain protein [Thermosphaera aggregans DSM 11486]
          Length = 274

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 15/92 (16%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL           +C FC +       T G   + +     I    I    +  Y  L
Sbjct: 63  GCNL-----------RCGFCWSWRFSHVSTGGWFESAESAFQKIYS--IAARNKYEYVRL 109

Query: 91  TGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120
           +GGEP L  +  L  IQ  ++  F   +ETNG
Sbjct: 110 SGGEPTLSKNHLLKIIQLFSETSFTFILETNG 141


>gi|289580100|ref|YP_003478566.1| molybdenum cofactor biosynthesis protein A [Natrialba magadii ATCC
           43099]
 gi|289529653|gb|ADD04004.1| molybdenum cofactor biosynthesis protein A [Natrialba magadii ATCC
           43099]
          Length = 341

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 20/108 (18%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR +  C +C      DT      G    + +  +  D++    +  E +      TGGE
Sbjct: 19  DRCNFDCVYCHNEGLGDTR-----GPMDPQDDEMETDDVVRFLEVAAEFDVDAVKFTGGE 73

Query: 95  PLL-QVDVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS 134
           P+L Q    +I+   ++  E+++ TNGT  P         G+D + VS
Sbjct: 74  PMLRQDLTEIIERTPEQ-MEVSLTTNGTFLPGRAEELVDAGLDRVNVS 120


>gi|218701338|ref|YP_002408967.1| pyruvate formate lyase II activase [Escherichia coli IAI39]
 gi|218371324|emb|CAR19156.1| pyruvate formate lyase II activase [Escherichia coli IAI39]
          Length = 292

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATLF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195


>gi|158317934|ref|YP_001510442.1| radical SAM domain-containing protein [Frankia sp. EAN1pec]
 gi|158113339|gb|ABW15536.1| Radical SAM domain protein [Frankia sp. EAN1pec]
          Length = 332

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 50/146 (34%), Gaps = 27/146 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C                R  V+Q    ++E             L 
Sbjct: 38  CNLSC--------EGCG----KIQHPADVLKQRMPVEQALAAVDECG------APVVCLA 79

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE-- 148
           GGEPL+   +  +++ L KR   I + TN  +  P+ ID +  SP     + I G ++  
Sbjct: 80  GGEPLMHPQIEQIVEGLVKRKKFIYLCTN-AVLLPRKIDKLKPSPYLSLAVHIDGLEDRH 138

Query: 149 -----LKLVFPQVNVSPENYIGFDFE 169
                 K VF Q   + ++     F 
Sbjct: 139 DESVAKKGVFAQAVDAIKDAQDRGFR 164


>gi|30064761|ref|NP_838932.1| pyruvate formate lyase II activase [Shigella flexneri 2a str.
           2457T]
 gi|56480491|ref|NP_709752.2| pyruvate formate lyase II activase [Shigella flexneri 2a str. 301]
 gi|74314454|ref|YP_312873.1| pyruvate formate lyase II activase [Shigella sonnei Ss046]
 gi|110807808|ref|YP_691328.1| pyruvate formate lyase II activase [Shigella flexneri 5 str. 8401]
 gi|157154749|ref|YP_001465449.1| pyruvate formate lyase II activase [Escherichia coli E24377A]
 gi|218697666|ref|YP_002405333.1| pyruvate formate lyase II activase [Escherichia coli 55989]
 gi|307314720|ref|ZP_07594317.1| glycyl-radical enzyme activating protein family [Escherichia coli
           W]
 gi|331670807|ref|ZP_08371643.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
           (Formate-C-acetyltransferase-activating enzyme 2)
           [Escherichia coli TA271]
 gi|30043021|gb|AAP18743.1| probable pyruvate formate lyase activating enzyme 2 [Shigella
           flexneri 2a str. 2457T]
 gi|56384042|gb|AAN45459.2| probable pyruvate formate lyase activating enzyme 2 [Shigella
           flexneri 2a str. 301]
 gi|73857931|gb|AAZ90638.1| probable pyruvate formate lyase activating enzyme 2 [Shigella
           sonnei Ss046]
 gi|110617356|gb|ABF06023.1| probable pyruvate formate lyase activating enzyme 2 [Shigella
           flexneri 5 str. 8401]
 gi|157076779|gb|ABV16487.1| glycyl-radical enzyme activating protein family [Escherichia coli
           E24377A]
 gi|218354398|emb|CAV01179.1| pyruvate formate lyase II activase [Escherichia coli 55989]
 gi|306905775|gb|EFN36301.1| glycyl-radical enzyme activating protein family [Escherichia coli
           W]
 gi|315063287|gb|ADT77614.1| pyruvate formate lyase II activase [Escherichia coli W]
 gi|320201554|gb|EFW76132.1| Pyruvate formate-lyase activating enzyme [Escherichia coli EC4100B]
 gi|323380650|gb|ADX52918.1| glycyl-radical enzyme activating protein family [Escherichia coli
           KO11]
 gi|324115499|gb|EGC09440.1| glycyl-radical enzyme activating protein family protein
           [Escherichia coli E1167]
 gi|331062062|gb|EGI33985.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
           (Formate-C-acetyltransferase-activating enzyme 2)
           [Escherichia coli TA271]
          Length = 292

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195


>gi|153835535|ref|ZP_01988202.1| pyruvate formate-lyase 1-activating enzyme [Vibrio harveyi HY01]
 gi|148867892|gb|EDL67111.1| pyruvate formate-lyase 1-activating enzyme [Vibrio harveyi HY01]
          Length = 246

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 52/165 (31%), Gaps = 36/165 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT         G    V+++    +      
Sbjct: 25  VF--LQGC-----------LMRCKYCHNRDT----WDTHDGKEVTVEEIIAEAKTYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWICVS 134
              G     +GGE +LQ +      +A    G    ++TNG     T    + +D     
Sbjct: 68  NASGGGITCSGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRKHTDVIDEVLD----- 122

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
                DL +   + +K    Q  +   N    DF R  L  +   
Sbjct: 123 ---ATDLVMLDLKHMKDEIHQEFIGVSNRRVLDFAR-YLHKIGQK 163


>gi|300896453|ref|ZP_07114982.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 198-1]
 gi|300359681|gb|EFJ75551.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 198-1]
          Length = 279

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 11  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 66  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L   G   A+ET G
Sbjct: 126 LQRLRLWGVSCAIETAG 142


>gi|288574329|ref|ZP_06392686.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570070|gb|EFC91627.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 228

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 28/124 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +F R  GC           +  C +C     G    +G   + + + D +  +    +  
Sbjct: 22  IFTR--GC-----------TFACPWC---HNGGLLDQGEGLDEEDILDFLRRRIKIIDG- 64

Query: 85  GRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSPK 136
               V++GGEP +  D+P  I  + K G  I ++TNG++          + +D++ +  K
Sbjct: 65  ---LVISGGEPTVHEDLPRFISEVRKMGLLIKLDTNGSLPDRLEPLLDEKLVDYVAMDVK 121

Query: 137 AGCD 140
           A  +
Sbjct: 122 APLE 125


>gi|120601418|ref|YP_965818.1| radical SAM domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|120561647|gb|ABM27391.1| Radical SAM domain protein [Desulfovibrio vulgaris DP4]
 gi|311235064|gb|ADP87918.1| Radical SAM domain protein [Desulfovibrio vulgaris RCH1]
          Length = 574

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 43/109 (39%), Gaps = 20/109 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C +C D D  G QG K    ++D +  L  E    G K     + 
Sbjct: 279 CNL-----------ACVWCSDKDLRGRQGVK-ATLSLDTVRRLTHELREGGTKG--IVIE 324

Query: 91  TGGEPLLQVDVPLIQA-LNKRGFEIAVETNGTIEPPQGI----DWICVS 134
            GGEP L  D   I A +   G    + TNG +  P  +    DW+ VS
Sbjct: 325 GGGEPTLHPDFAAIVACITDAGMGAGLITNGVVTLPPDVLRRLDWVRVS 373


>gi|38704217|ref|NP_312908.2| pyruvate formate lyase II activase [Escherichia coli O157:H7 str.
           Sakai]
 gi|189010251|ref|ZP_02805886.2| glycyl-radical enzyme activating protein family [Escherichia coli
           O157:H7 str. EC4076]
 gi|189402184|ref|ZP_02780653.2| glycyl-radical enzyme activating protein family [Escherichia coli
           O157:H7 str. EC4401]
 gi|189403090|ref|ZP_02793271.2| glycyl-radical enzyme activating protein family [Escherichia coli
           O157:H7 str. EC4486]
 gi|189404857|ref|ZP_02811825.2| glycyl-radical enzyme activating protein family [Escherichia coli
           O157:H7 str. EC869]
 gi|208809017|ref|ZP_03251354.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7
           str. EC4206]
 gi|209397570|ref|YP_002273474.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7
           str. EC4115]
 gi|217325269|ref|ZP_03441353.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7
           str. TW14588]
 gi|300902607|ref|ZP_07120582.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 84-1]
 gi|300928731|ref|ZP_07144247.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 187-1]
 gi|301306407|ref|ZP_07212475.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 124-1]
 gi|189001611|gb|EDU70597.1| glycyl-radical enzyme activating protein family [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357223|gb|EDU75642.1| glycyl-radical enzyme activating protein family [Escherichia coli
           O157:H7 str. EC4401]
 gi|189362696|gb|EDU81115.1| glycyl-radical enzyme activating protein family [Escherichia coli
           O157:H7 str. EC4486]
 gi|189373223|gb|EDU91639.1| glycyl-radical enzyme activating protein family [Escherichia coli
           O157:H7 str. EC869]
 gi|208728818|gb|EDZ78419.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7
           str. EC4206]
 gi|209158970|gb|ACI36403.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7
           str. EC4115]
 gi|217321490|gb|EEC29914.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7
           str. TW14588]
 gi|300405335|gb|EFJ88873.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 84-1]
 gi|300463256|gb|EFK26749.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 187-1]
 gi|300838347|gb|EFK66107.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 124-1]
 gi|315253620|gb|EFU33588.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 85-1]
 gi|323174307|gb|EFZ59933.1| glycyl-radical enzyme activating family protein [Escherichia coli
           LT-68]
 gi|323177977|gb|EFZ63561.1| glycyl-radical enzyme activating family protein [Escherichia coli
           1180]
          Length = 279

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 11  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 66  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 182


>gi|127513319|ref|YP_001094516.1| pyruvate formate lyase-activating enzyme 1 [Shewanella loihica
           PV-4]
 gi|126638614|gb|ABO24257.1| pyruvate formate-lyase activating enzyme [Shewanella loihica PV-4]
          Length = 246

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 33/122 (27%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F T+ G G          RF     GC             +C++C   DT        
Sbjct: 11  ESFGTVDGPG---------IRFITFMQGC-----------LMRCQYCHNRDT----WDLH 46

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
            G    VD L + I       E  G     +GGE +LQ +    L +A   +G    ++T
Sbjct: 47  GGHEIEVDVLMEQIISYRPFLESSGGGVTASGGEAILQAEFVAALFKACKAQGIHTCLDT 106

Query: 119 NG 120
           NG
Sbjct: 107 NG 108


>gi|302873839|ref|YP_003842472.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307689916|ref|ZP_07632362.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302576696|gb|ADL50708.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
          Length = 460

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 7/78 (8%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104
           +C +C   F      K  + N ++  ++I++    G  +   C ++GGEP+L      ++
Sbjct: 132 RCIYC---FNNSGEAKTVQLNTNEWLEVIKQARELGIVK---CTVSGGEPMLHPGFFDIL 185

Query: 105 QALNKRGFEIAVETNGTI 122
           +A+   G  + + TNG++
Sbjct: 186 RAITDSGMSVYICTNGSL 203


>gi|209695413|ref|YP_002263342.1| pyruvate formate lyase-activating enzyme 1 [Aliivibrio salmonicida
           LFI1238]
 gi|208009365|emb|CAQ79638.1| pyruvate formate-lyase 1 activating enzyme [Aliivibrio salmonicida
           LFI1238]
          Length = 245

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 25/152 (16%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C +C   DT        +G   +V +L +  +      
Sbjct: 24  IF--LQGC-----------LMRCMYCHNRDT----WDTHEGKEVSVTELIEEAKSYRHFM 66

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139
           +  G     +GGE +LQ +      QA    G    ++TNG I     +    +   A  
Sbjct: 67  KASGGGITCSGGEAMLQPEFVRDFFQAAQAEGMHTCLDTNGYIRKHTDVVDEVL---AAS 123

Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
           DL +   + +K       +   N    DF R+
Sbjct: 124 DLVMLDIKHMKDEIHHDFIGVSNRRTLDFARY 155


>gi|289578845|ref|YP_003477472.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacter italicus Ab9]
 gi|289528558|gb|ADD02910.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacter italicus Ab9]
          Length = 228

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 30/158 (18%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
             VF   SGCN            +C +C   ++       G  +  +  D ++++    E
Sbjct: 19  ATVFI--SGCNF-----------KCPYCHNSYLIQIRE--GIRSEKEFFDYLKKRANLIE 63

Query: 83  KEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS 134
                  +TGGEP L   +   I+      F + ++TNG+             +D+I + 
Sbjct: 64  G----VCITGGEPTLWKGLKDFIKNTKDLNFSVKLDTNGSRPQVLENLIDEGLLDYIAMD 119

Query: 135 PKAGCD---LKIKGGQELKLVFPQVNVSPENYIGFDFE 169
            KA  +   + +K  +++  V   V +   + I ++F 
Sbjct: 120 IKAPIEKYGIFLKNKKDIDNVQKSVEIIKNSDIAYEFR 157


>gi|237716369|ref|ZP_04546850.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D1]
 gi|262407971|ref|ZP_06084519.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 2_1_22]
 gi|294644254|ref|ZP_06722023.1| radical SAM domain protein [Bacteroides ovatus SD CC 2a]
 gi|294807964|ref|ZP_06766743.1| radical SAM domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229444016|gb|EEO49807.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D1]
 gi|262354779|gb|EEZ03871.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 2_1_22]
 gi|292640418|gb|EFF58667.1| radical SAM domain protein [Bacteroides ovatus SD CC 2a]
 gi|294444848|gb|EFG13536.1| radical SAM domain protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 205

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 40/112 (35%), Gaps = 21/112 (18%)

Query: 11  LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL 70
           LT+ GEG           F GC L           +C++C              YN +QL
Sbjct: 14  LTIDGEGVTTLVA-----FHGCPL-----------RCKYCLNPTSLQPNGVWESYNCNQL 57

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI---QALNKRGFEIAVETN 119
            + + +  +            GGEPLLQ     I   + L    + I VET+
Sbjct: 58  YEEVRKDELYFLASCGGVTFGGGEPLLQS--EFIRQFRQLCGPEWRITVETS 107


>gi|52549683|gb|AAU83532.1| pyruvate-formate lyase-activating enzyme [uncultured archaeon
           GZfos30H9]
          Length = 230

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 37/105 (35%), Gaps = 28/105 (26%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF    GCN            +C +C               +    A  I E  I G  E
Sbjct: 22  VF--TQGCNF-----------KCPYC---------HNPELVDPKLFAQPIPEADIFGFLE 59

Query: 85  GRY-----CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
            R        +TGGEP LQ D+    + +    F + ++TNG+  
Sbjct: 60  TRRGKLDAVEITGGEPTLQPDLIDFTKKIKSLNFLVKLDTNGSNP 104


>gi|261367872|ref|ZP_05980755.1| pyruvate formate-lyase 1-activating enzyme [Subdoligranulum
           variabile DSM 15176]
 gi|282570678|gb|EFB76213.1| pyruvate formate-lyase 1-activating enzyme [Subdoligranulum
           variabile DSM 15176]
          Length = 255

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 21/110 (19%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +F    GC           + +C++C       +     R       +  +         
Sbjct: 28  IF--LQGC-----------AMRCQYC----HNPETWAFTRDTEKTPQEAFDAALRYRNYW 70

Query: 85  GRY--CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDW 130
                  ++GGEPLLQ+D    + +    +G   A++T+G    P   DW
Sbjct: 71  RNNGGLTISGGEPLLQMDFVSEVFRLARAKGIHTALDTSGQPFAPDNADW 120


>gi|191168939|ref|ZP_03030708.1| glycyl-radical enzyme activating protein family [Escherichia coli
           B7A]
 gi|193068054|ref|ZP_03049019.1| glycyl-radical enzyme activating protein family [Escherichia coli
           E110019]
 gi|300819369|ref|ZP_07099567.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 107-1]
 gi|300824342|ref|ZP_07104457.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 119-7]
 gi|190901026|gb|EDV60806.1| glycyl-radical enzyme activating protein family [Escherichia coli
           B7A]
 gi|192958674|gb|EDV89112.1| glycyl-radical enzyme activating protein family [Escherichia coli
           E110019]
 gi|300523148|gb|EFK44217.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 119-7]
 gi|300528052|gb|EFK49114.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 107-1]
 gi|313648844|gb|EFS13283.1| glycyl-radical enzyme activating family protein [Shigella flexneri
           2a str. 2457T]
 gi|323167431|gb|EFZ53139.1| glycyl-radical enzyme activating family protein [Shigella sonnei
           53G]
          Length = 279

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 11  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 66  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 182


>gi|170022036|ref|YP_001726990.1| pyruvate formate lyase II activase [Escherichia coli ATCC 8739]
 gi|169756964|gb|ACA79663.1| glycyl-radical enzyme activating protein family [Escherichia coli
           ATCC 8739]
          Length = 292

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLQLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195


>gi|56962668|ref|YP_174394.1| molybdenum cofactor biosynthesis protein A [Bacillus clausii
           KSM-K16]
 gi|56908906|dbj|BAD63433.1| molybdenum cofactor biosynthesis protein A [Bacillus clausii
           KSM-K16]
          Length = 338

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 18/95 (18%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D     +   +    +VD++    E+    G K+ R   +TG
Sbjct: 23  DRCNFRCSYCMPAEVFGPD--HAFMD--ESELLSVDEIVRTAEQFVQLGVKKIR---ITG 75

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEP 124
           GEPLL+ +VP LI  L+   G E +A+ TNG + P
Sbjct: 76  GEPLLRKEVPHLIGRLHAIEGLEDLALTTNGVMLP 110


>gi|269954959|ref|YP_003324748.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269303640|gb|ACZ29190.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 232

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 67/219 (30%), Gaps = 63/219 (28%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G++A  VF    GC             +C +C  + + +   + G     ++ + +  + 
Sbjct: 21  GKLAAVVF--LQGCP-----------WRCVYCHNEEI-LDPREPGTMPWFEVVEFLRRRR 66

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-------PQGIDW 130
              +      V +GGEPLL   +P  I  +   GF + + T G              +DW
Sbjct: 67  GLLDG----VVFSGGEPLLSKALPTAIGEVRNLGFAVGLHTGGAWPRRLQALLDDGALDW 122

Query: 131 ICVSPK--------------------AGCDLKIKGG--QELKLVF-------PQVNVSPE 161
           + +  K                    A  +  +  G   E++          P V    E
Sbjct: 123 VGLDVKHLPERYASVTGVPSSGAAAWASLEAVLASGVSHEVRTTVDPTVHTRPDVVALAE 182

Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRL 200
                  +  +LQ      L      A +       WRL
Sbjct: 183 RLAALGVQHHALQEARPDGLAAGHAEAFA------GWRL 215


>gi|258621387|ref|ZP_05716421.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM573]
 gi|258626814|ref|ZP_05721621.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM603]
 gi|262171168|ref|ZP_06038846.1| pyruvate formate-lyase activating enzyme [Vibrio mimicus MB-451]
 gi|258580861|gb|EEW05803.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM603]
 gi|258586775|gb|EEW11490.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM573]
 gi|261892244|gb|EEY38230.1| pyruvate formate-lyase activating enzyme [Vibrio mimicus MB-451]
          Length = 246

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 53/156 (33%), Gaps = 27/156 (17%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT         G    V+++    +      
Sbjct: 25  VF--LQGC-----------LFRCKYCHNRDT----WDTHTGREVTVEEIIKEAKSYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI-EPPQGIDWICVSPKAG 138
              G     +GGE +LQ +      +A    G    ++TNG I +    ID +       
Sbjct: 68  NASGGGVTCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYIRKFTPVIDEVL----EV 123

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
            DL +   +++     Q  +   N    DF R+  Q
Sbjct: 124 TDLVMLDIKQMNDEIHQDLIGVSNKRTLDFARYLHQ 159


>gi|29376171|ref|NP_815325.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           V583]
 gi|227518800|ref|ZP_03948849.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           TX0104]
 gi|227553414|ref|ZP_03983463.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           HH22]
 gi|229545774|ref|ZP_04434499.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           TX1322]
 gi|229549964|ref|ZP_04438689.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           ATCC 29200]
 gi|255972746|ref|ZP_05423332.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           T1]
 gi|255975798|ref|ZP_05426384.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           T2]
 gi|256619111|ref|ZP_05475957.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           ATCC 4200]
 gi|256762547|ref|ZP_05503127.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           T3]
 gi|256853173|ref|ZP_05558543.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis T8]
 gi|256959027|ref|ZP_05563198.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           DS5]
 gi|256961880|ref|ZP_05566051.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           Merz96]
 gi|256965078|ref|ZP_05569249.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           HIP11704]
 gi|257079058|ref|ZP_05573419.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           JH1]
 gi|257082503|ref|ZP_05576864.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           E1Sol]
 gi|257085135|ref|ZP_05579496.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           Fly1]
 gi|257086696|ref|ZP_05581057.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           D6]
 gi|257089932|ref|ZP_05584293.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           CH188]
 gi|257416141|ref|ZP_05593135.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           AR01/DG]
 gi|257419343|ref|ZP_05596337.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           T11]
 gi|257422563|ref|ZP_05599553.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           X98]
 gi|293382946|ref|ZP_06628864.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           R712]
 gi|293389565|ref|ZP_06634022.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           S613]
 gi|294781698|ref|ZP_06747033.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           PC1.1]
 gi|300860342|ref|ZP_07106429.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TUSoD Ef11]
 gi|307270971|ref|ZP_07552254.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX4248]
 gi|307273177|ref|ZP_07554423.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0855]
 gi|307274911|ref|ZP_07556074.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX2134]
 gi|307278019|ref|ZP_07559103.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0860]
 gi|307289153|ref|ZP_07569109.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0109]
 gi|307291949|ref|ZP_07571818.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0411]
 gi|312899462|ref|ZP_07758792.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0470]
 gi|312903355|ref|ZP_07762535.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0635]
 gi|312907583|ref|ZP_07766574.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           DAPTO 512]
 gi|312910201|ref|ZP_07769048.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           DAPTO 516]
 gi|312951545|ref|ZP_07770441.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0102]
 gi|29343634|gb|AAO81395.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           V583]
 gi|227073795|gb|EEI11758.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           TX0104]
 gi|227177465|gb|EEI58437.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           HH22]
 gi|229304877|gb|EEN70873.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           ATCC 29200]
 gi|229309086|gb|EEN75073.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           TX1322]
 gi|255963764|gb|EET96240.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           T1]
 gi|255968670|gb|EET99292.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           T2]
 gi|256598638|gb|EEU17814.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           ATCC 4200]
 gi|256683798|gb|EEU23493.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           T3]
 gi|256711632|gb|EEU26670.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis T8]
 gi|256949523|gb|EEU66155.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           DS5]
 gi|256952376|gb|EEU69008.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           Merz96]
 gi|256955574|gb|EEU72206.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           HIP11704]
 gi|256987088|gb|EEU74390.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           JH1]
 gi|256990533|gb|EEU77835.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           E1Sol]
 gi|256993165|gb|EEU80467.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           Fly1]
 gi|256994726|gb|EEU82028.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           D6]
 gi|256998744|gb|EEU85264.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           CH188]
 gi|257157969|gb|EEU87929.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           ARO1/DG]
 gi|257161171|gb|EEU91131.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           T11]
 gi|257164387|gb|EEU94347.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           X98]
 gi|291079611|gb|EFE16975.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           R712]
 gi|291081182|gb|EFE18145.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           S613]
 gi|294451250|gb|EFG19717.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           PC1.1]
 gi|300849381|gb|EFK77131.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TUSoD Ef11]
 gi|306496947|gb|EFM66495.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0411]
 gi|306499862|gb|EFM69223.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0109]
 gi|306505416|gb|EFM74602.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0860]
 gi|306508359|gb|EFM77466.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX2134]
 gi|306510162|gb|EFM79186.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0855]
 gi|306512469|gb|EFM81118.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX4248]
 gi|310626611|gb|EFQ09894.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           DAPTO 512]
 gi|310630511|gb|EFQ13794.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0102]
 gi|310633231|gb|EFQ16514.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0635]
 gi|311289474|gb|EFQ68030.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           DAPTO 516]
 gi|311293332|gb|EFQ71888.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0470]
 gi|315027219|gb|EFT39151.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX2137]
 gi|315029337|gb|EFT41269.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX4000]
 gi|315034016|gb|EFT45948.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0017]
 gi|315037025|gb|EFT48957.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0027]
 gi|315145095|gb|EFT89111.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX2141]
 gi|315147312|gb|EFT91328.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX4244]
 gi|315150489|gb|EFT94505.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0012]
 gi|315152432|gb|EFT96448.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0031]
 gi|315155705|gb|EFT99721.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0043]
 gi|315158124|gb|EFU02141.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0312]
 gi|315160389|gb|EFU04406.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0645]
 gi|315164062|gb|EFU08079.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX1302]
 gi|315169778|gb|EFU13795.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX1342]
 gi|315172257|gb|EFU16274.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX1346]
 gi|315575819|gb|EFU88010.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0309B]
 gi|315577659|gb|EFU89850.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0630]
 gi|315580471|gb|EFU92662.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0309A]
 gi|323480777|gb|ADX80216.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           62]
 gi|327535181|gb|AEA94015.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           OG1RF]
 gi|329571652|gb|EGG53333.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX1467]
          Length = 254

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 20/101 (19%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT-G 81
            RF     GC             +C+FC        G+ G     D++ +         G
Sbjct: 23  VRFIVFTQGC-----------RMRCQFCHNPDTWKIGSGGRVVTTDEVLEEALRFRSYWG 71

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           EK G    ++GGEPLLQ+D  + L +    +G    ++T G
Sbjct: 72  EKGG--ITVSGGEPLLQMDFLIDLFKKAKAQGIHTTLDTCG 110


>gi|315168988|gb|EFU13005.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX1341]
          Length = 254

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 20/101 (19%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT-G 81
            RF     GC             +C+FC        G+ G     D++ +         G
Sbjct: 23  VRFIVFTQGC-----------RMRCQFCHNPDTWKIGSGGRVVTTDEVLEEALRFRSYWG 71

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           EK G    ++GGEPLLQ+D  + L +    +G    ++T G
Sbjct: 72  EKGG--ITVSGGEPLLQMDFLIDLFKKAKAQGIHTTLDTCG 110


>gi|227328163|ref|ZP_03832187.1| pyruvate formate lyase-activating enzyme 1 [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 246

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 56/181 (30%), Gaps = 38/181 (20%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F  F GC             +C +C   DT         G    V++L   +       
Sbjct: 25  IF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKEVVTYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKA 137
              G     +GGE +LQ +      +A    G    ++TNG        ID  + VS   
Sbjct: 68  NASGGGVTASGGEAILQAEFVRDWFRACKAEGINTCLDTNGFVRRYDPVIDELLDVSDLV 127

Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197
             DLK            Q  V   N+   DF R+          + N    I Y    P 
Sbjct: 128 MLDLKQMNDD-----IHQNLVGVSNHRTLDFARY--------LAKRNQRTWIRYVVV-PG 173

Query: 198 W 198
           W
Sbjct: 174 W 174


>gi|197335857|ref|YP_002156408.1| pyruvate formate-lyase 1-activating enzyme [Vibrio fischeri MJ11]
 gi|197317347|gb|ACH66794.1| pyruvate formate-lyase 1-activating enzyme [Vibrio fischeri MJ11]
          Length = 245

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 53/161 (32%), Gaps = 28/161 (17%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C +C   DT         G    V +L +  +      
Sbjct: 24  VF--LQGC-----------LMRCMYCHNRDT----WDTHDGKEVTVAELIEEAKSYRHFM 66

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQG-IDWICVSPKAG 138
           +  G     +GGE +LQ +      +A    G    ++TNG I      ID +       
Sbjct: 67  KASGGGITCSGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRKHTDVIDEVL----EA 122

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
            DL +   +++K    +  +   N    DF R  L  +   
Sbjct: 123 SDLVMLDLKQMKDDIHKEFIGVSNTRVLDFAR-YLHKIGQK 162


>gi|327438653|dbj|BAK15018.1| hypothetical protein SSIL_0595 [Solibacillus silvestris StLB046]
          Length = 299

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C FC  T+         G   V+Q A +++E     +    +   
Sbjct: 15  CNL-----------ACSFCPPTERA------KGLIKVEQFAHILDEISGYTKYIYLHVK- 56

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
             GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 57  --GEPLLHPRIGQLLDIAHEKGFKVNITTNGTL 87


>gi|309797156|ref|ZP_07691553.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 145-7]
 gi|308119235|gb|EFO56497.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 145-7]
          Length = 279

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 11  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 66  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATHF 125

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 182


>gi|207722418|ref|YP_002252854.1| ribonucleotide reductase activating protein [Ralstonia solanacearum
           MolK2]
 gi|206587597|emb|CAQ18179.1| ribonucleotide reductase activating protein [Ralstonia solanacearum
           MolK2]
          Length = 248

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 28/128 (21%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G++A  VF   +GC             +C +C          +    +  Q+   ++ + 
Sbjct: 46  GQLAAVVFI--AGCP-----------WRCHYC---HNPHLQARERHIHWTQVMAFLQSRR 89

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
              +      V +GGEPL +  +P LI A+   GF+  + T G            +DW+ 
Sbjct: 90  ALLDA----VVFSGGEPLSEPRLPQLIAAVRALGFKTGLHTAGIYPARLAAVLPMLDWVG 145

Query: 133 VSPKAGCD 140
           +  K    
Sbjct: 146 LDIKTTAS 153


>gi|300937144|ref|ZP_07152000.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 21-1]
 gi|300457787|gb|EFK21280.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 21-1]
          Length = 279

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 11  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 66  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L   G   A+ET G
Sbjct: 126 LQRLRLWGVSCAIETAG 142


>gi|167837250|ref|ZP_02464133.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderia thailandensis MSMB43]
          Length = 239

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 26/130 (20%)

Query: 17  GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           G  A    VF    GC             +C +C    +  +    G    D L   +  
Sbjct: 26  GQFA--AVVFV--QGCP-----------WRCGYCHNPHLQPRSHPAG-IEWDALLAFLAR 69

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI-----EPPQGIDW 130
           +    +      V +GGEP +   +   I  + + GF+I + + GT           +DW
Sbjct: 70  RVGLIDA----VVFSGGEPSIDPALAASIGDVRQLGFKIGLHSAGTHPRRLTPLLPSLDW 125

Query: 131 ICVSPKAGCD 140
           I +  KA  D
Sbjct: 126 IGLDVKAPFD 135


>gi|331649807|ref|ZP_08350887.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
           (Formate-C-acetyltransferase-activating enzyme 2)
           [Escherichia coli M605]
 gi|331041440|gb|EGI13590.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
           (Formate-C-acetyltransferase-activating enzyme 2)
           [Escherichia coli M605]
          Length = 315

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 47  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 101

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 102 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 161

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L   G   A+ET G
Sbjct: 162 LQRLRLWGVSCAIETAG 178


>gi|331086536|ref|ZP_08335615.1| hypothetical protein HMPREF0987_01918 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410594|gb|EGG90022.1| hypothetical protein HMPREF0987_01918 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 426

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 73/181 (40%), Gaps = 34/181 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           CNL           +CR C  D   V  + T+    N +QL ++ E+   +        V
Sbjct: 103 CNL-----------RCRHCCVDAKHVS-EFTEKDELNTEQLKEVFEK---SAALNPEQIV 147

Query: 90  LTGGEPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWI--CVSPKAGCDLKIKG 145
           L+GGEP+++ D + L+  L K    +I++ TNG +     I ++  C+      D+ I G
Sbjct: 148 LSGGEPMVRKDFMELLYYLRKHFKNKISLSTNGLLITESNIKYLNNCID---KYDISIDG 204

Query: 146 GQEL-------KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ---N 195
             E        K VF +V  S E    +  +   L  M   F E      +  C +   +
Sbjct: 205 VDEESCSRIRGKGVFKKVIESIELIKKYGDKEIYLSMMFDDFNENLRGEFLQLCKRLGVH 264

Query: 196 P 196
           P
Sbjct: 265 P 265


>gi|293413394|ref|ZP_06656055.1| pyruvate formate-lyase activating enzyme [Escherichia coli B354]
 gi|291468142|gb|EFF10640.1| pyruvate formate-lyase activating enzyme [Escherichia coli B354]
          Length = 292

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L   G   A+ET G
Sbjct: 139 LQRLRLWGVSCAIETAG 155


>gi|220905871|ref|YP_002481182.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219862482|gb|ACL42821.1| Radical SAM domain protein [Cyanothece sp. PCC 7425]
          Length = 324

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 16/101 (15%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R +A+C FCD          G   +   +   +++    G    +Y   TGGEPLL+ DV
Sbjct: 13  RCNARCHFCD----IWALEPGKEADFATIQTNLQDLRRLG---VKYVDFTGGEPLLRADV 65

Query: 102 PLI-QALNKRGFEIAVETNGTIEPPQG-------IDWICVS 134
             I +   + GF  ++ TN TI  PQ        ID++  S
Sbjct: 66  EHIYREAKQMGFYTSMTTN-TILYPQKAKQMRGLIDFLNFS 105


>gi|154150933|ref|YP_001404551.1| putative molybdenum cofactor biosynthesis protein A [Candidatus
           Methanoregula boonei 6A8]
 gi|153999485|gb|ABS55908.1| putative molybdenum cofactor biosynthesis protein A [Methanoregula
           boonei 6A8]
          Length = 296

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 30/120 (25%)

Query: 21  GRVAVFCR---FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           GR     R    S CNL            C +C       +       + D++  ++   
Sbjct: 12  GRPVTNLRISLTSRCNL-----------SCIYC---HAEGEKNPATEMSTDEIIAIMN-- 55

Query: 78  WITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVE----TNGTIEPPQGIDWIC 132
            +  +   R    TGGEPL++ D + +I+A       + +E    TNG +      D   
Sbjct: 56  -VAAKFGIRSIKFTGGEPLIRPDILDIIRA-----VPVGIESSVTTNGILLADMAYDLKT 109


>gi|284165828|ref|YP_003404107.1| molybdenum cofactor biosynthesis protein A [Haloterrigena
           turkmenica DSM 5511]
 gi|284015483|gb|ADB61434.1| molybdenum cofactor biosynthesis protein A [Haloterrigena
           turkmenica DSM 5511]
          Length = 330

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 13/98 (13%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR +  C +C      DT   G    +    + D +   +E   +  E +      TGGE
Sbjct: 19  DRCNFDCVYCHNEGLGDTR--GPMDPQDDEMSTDDVVRFLE---VAAEFDVDAVKFTGGE 73

Query: 95  PLL-QVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           P+L Q    +I+       E+++ TNGT  P +  D +
Sbjct: 74  PMLRQDLEEIIERTPDS-MEVSLTTNGTFLPGRAPDLV 110


>gi|206896550|ref|YP_002247823.1| putative pyruvate formate-lyase 3-activating enzyme (PFL-activating
           enzyme 3) (Formate-C-acetyltransferase-activatingenzyme
           3) [Coprothermobacter proteolyticus DSM 5265]
 gi|206739167|gb|ACI18245.1| putative pyruvate formate-lyase 3-activating enzyme (PFL-activating
           enzyme 3) (Formate-C-acetyltransferase-activatingenzyme
           3) [Coprothermobacter proteolyticus DSM 5265]
          Length = 306

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 34  LWSGREQDRLSAQC-RFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           +   R Q      C  +C T    + G      +V +L   +E+  +  ++ G     TG
Sbjct: 80  VVIDRTQCTRCGVCAHYCPTTAWQMVGF---TLSVKELMQELEKDRLYYDQSGGGVTFTG 136

Query: 93  GEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
           GEP +Q       ++A  + G   AVET+G + 
Sbjct: 137 GEPFMQAHFLQHALKACKELGIHTAVETSGFVP 169


>gi|298481369|ref|ZP_06999562.1| pyruvate formate-lyase-activating enzyme [Bacteroides sp. D22]
 gi|298272573|gb|EFI14141.1| pyruvate formate-lyase-activating enzyme [Bacteroides sp. D22]
          Length = 205

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 40/112 (35%), Gaps = 21/112 (18%)

Query: 11  LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL 70
           LT+ GEG           F GC L           +C++C              YN +QL
Sbjct: 14  LTIDGEGVTTLVA-----FHGCPL-----------RCKYCLNPTSLQPNGVWESYNCNQL 57

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI---QALNKRGFEIAVETN 119
            + + +  +            GGEPLLQ     I   + L    + I VET+
Sbjct: 58  YEEVRKDELYFLASCGGVTFGGGEPLLQS--EFIRQFRQLCGPEWRITVETS 107


>gi|293376744|ref|ZP_06622966.1| molybdenum cofactor biosynthesis protein A [Turicibacter sanguinis
           PC909]
 gi|292644610|gb|EFF62698.1| molybdenum cofactor biosynthesis protein A [Turicibacter sanguinis
           PC909]
          Length = 323

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 21/96 (21%)

Query: 32  CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           CNL           +C +C  DT    +   K G+ + D++  ++      G K+ R   
Sbjct: 20  CNL-----------RCVYCMEDTTQEFL--PKCGKLSDDEMIRIVTACARLGIKKVR--- 63

Query: 90  LTGGEPLLQVDV-PLIQALNKR-GF-EIAVETNGTI 122
           LTGGEPL++  +  LI+ ++   G  EI + TNGT+
Sbjct: 64  LTGGEPLVRPGIVELIKRIHDIDGIEEIYLTTNGTV 99


>gi|51894040|ref|YP_076731.1| molybdenum cofactor biosynthesis protein A [Symbiobacterium
           thermophilum IAM 14863]
 gi|51857729|dbj|BAD41887.1| molybdenum cofactor biosynthesis protein A [Symbiobacterium
           thermophilum IAM 14863]
          Length = 329

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 14/112 (12%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           N       DR + +C +C     G++ G        +++  +++     G    R   +T
Sbjct: 10  NYMRISVTDRCNLRCVYC-MPLTGVKLGPHDEYLRYEEILRVVKAAVGLGIDRIR---VT 65

Query: 92  GGEPLL-QVDVPLIQALNKRGFE-IAVETNGTIEPP-------QGIDWICVS 134
           GGEPL+ Q  V  +  L   G   +++ TNG +  P        G+D + +S
Sbjct: 66  GGEPLVRQGIVEFLAQLKPLGVTDLSLSTNGLLFAPMAKDLKAAGVDRVNIS 117


>gi|167041236|gb|ABZ05993.1| putative Radical SAM superfamily protein [uncultured marine
           microorganism HF4000_001N02]
          Length = 363

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 15/106 (14%)

Query: 41  DRLSAQCRFC-DTDFVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
           DR + +C +C   +  G   T   R      D++  ++      G ++ R   +TGGEPL
Sbjct: 47  DRCNFRCPYCMPRERFGEDHTFLPRRAFLTFDEIEKVVRACMELGLEKVR---ITGGEPL 103

Query: 97  LQV-DVPLIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134
           L+     L+  L+  G ++A+ TNG++           G+  + VS
Sbjct: 104 LRPGLDDLMGRLSNLGLDLALTTNGSLLRRNAQALATAGLTRVTVS 149


>gi|307823472|ref|ZP_07653701.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
 gi|307735457|gb|EFO06305.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
          Length = 366

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 62/162 (38%), Gaps = 28/162 (17%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDVPLI 104
           +C FC  D++   G K  R +V  LAD + E    G K   Y    G GEP+L  ++  I
Sbjct: 51  RCTFCAVDYI---GYKAQRLDVKILADRLAEMGRLGVKSIMYA---GEGEPMLHKEINEI 104

Query: 105 QAL-NKRGFEIAVETNGTI-------EPPQGIDWICVSPKAG-----CDLKIKGGQELKL 151
             L    G +++  TNGT+       +    + WI VS  AG       +      +  L
Sbjct: 105 VRLTVDAGIDVSFTTNGTLMNSRFVEQSLPLVSWIKVSLNAGSAENYAAIHQTKASDFDL 164

Query: 152 VFPQVNVSPENYIGFDFE-----RFSLQPMDGPFLEENTNLA 188
           V   +  +  +            +  L P      EE T LA
Sbjct: 165 VLNNLRRAVAHKKAEQLSCTLGAQILLLP---ENREEVTALA 203


>gi|227111995|ref|ZP_03825651.1| pyruvate formate lyase-activating enzyme 1 [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 246

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 56/181 (30%), Gaps = 38/181 (20%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F  F GC             +C +C   DT         G    V++L   +       
Sbjct: 25  IF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKEVVTYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKA 137
              G     +GGE +LQ +      +A    G    ++TNG        ID  + VS   
Sbjct: 68  NASGGGVTASGGEAILQAEFVRDWFRACKAEGINTCLDTNGFVRRYDPVIDELLDVSDLV 127

Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197
             DLK            Q  V   N+   DF R+          + N    I Y    P 
Sbjct: 128 MLDLKQMNDD-----IHQNLVGVSNHRTLDFARY--------LAKRNQRTWIRYVVV-PG 173

Query: 198 W 198
           W
Sbjct: 174 W 174


>gi|21227828|ref|NP_633750.1| Heme biosynthesis protein [Methanosarcina mazei Go1]
 gi|20906239|gb|AAM31422.1| Heme biosynthesis protein [Methanosarcina mazei Go1]
          Length = 355

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 17/99 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            +GCNL            CR                   D+    I+E    G+      
Sbjct: 16  TAGCNLNC--------VHCRG-----ASTSSVPADELTTDEAKHFIDEVAGLGK---PIL 59

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           +L+GGEPL + DV  + +     G  + + TNGT+  P+
Sbjct: 60  ILSGGEPLTRSDVFEIARYGTDAGLRVVLATNGTLLTPE 98


>gi|254787842|ref|YP_003075271.1| pyruvate formate-lyase 1-activating enzyme [Teredinibacter turnerae
           T7901]
 gi|237686841|gb|ACR14105.1| pyruvate formate-lyase 1-activating enzyme [Teredinibacter turnerae
           T7901]
          Length = 265

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C +C   D+         G  Y+V ++ + +       
Sbjct: 40  VF--LQGC-----------QFRCLYCHNRDS----WDLHAGSLYSVQEVIEQVLPFAGFL 82

Query: 82  EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
           +       ++GGE LLQ      L + L K GF   ++TNG
Sbjct: 83  QSSNGGVTVSGGEALLQWEFLTLLFKQLKKLGFNTCLDTNG 123


>gi|78224019|ref|YP_385766.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78195274|gb|ABB33041.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 332

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL              + DT              + Q+  L E      E       +T
Sbjct: 38  CNLACSGCGRIRE----YADT--------------IQQMMSLEECLRSVDECPAPVVTIT 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEP L   +  LI A+  RG  + + TNG +   + ++ I V P    ++ + G +E
Sbjct: 80  GGEPFLYSHIYELIPAVLNRGKHVYLCTNG-LLLEKALENIKVHPNFYLNVHMDGLEE 136


>gi|115360432|ref|YP_777569.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
           AMMD]
 gi|115285760|gb|ABI91235.1| GTP cyclohydrolase subunit MoaA [Burkholderia ambifaria AMMD]
          Length = 372

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 25/142 (17%)

Query: 41  DRLSAQCRFC---DT---DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           D+ + +C +C   D+   D+  +  +   R +  QL  +       G ++ R   LTGGE
Sbjct: 48  DQCNFRCGYCMPRDSFGPDYAFMPSS--ERLSFAQLEKIARAFISLGVEKIR---LTGGE 102

Query: 95  PLLQVDVP-LIQALN------KRGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ ++  LI+ L        +  EIA+ TNG++           G+  + VS  A  D
Sbjct: 103 PLLRRNLEALIERLATLTTLDGKPVEIALTTNGSLLAAKARSLRDAGLSRVTVSLDAIDD 162

Query: 141 LKIKGGQELKLVFPQVNVSPEN 162
              +   +  +   +V    E 
Sbjct: 163 AVFRRMSDADVPVARVLAGIEA 184


>gi|313899548|ref|ZP_07833057.1| glycyl-radical enzyme activating protein family protein
           [Clostridium sp. HGF2]
 gi|312955655|gb|EFR37314.1| glycyl-radical enzyme activating protein family protein
           [Clostridium sp. HGF2]
          Length = 306

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 48/155 (30%), Gaps = 50/155 (32%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-----------CRFCDT------ 52
           F T  GEG       +F    GC L     Q+                C  C +      
Sbjct: 14  FATHDGEGIRT---TIF--LKGCPLRCAWCQNPEGLHPVLQLLYMETKCMHCGSCAAAAI 68

Query: 53  ----------------DFVGIQG------TKGGRYNVD--QLADLIEEQWITGE--KEGR 86
                                +G      T   RY+     ++D++ E        + G 
Sbjct: 69  HGGVSMQDGRIKLVRDAVEDWEGLIDICPTGALRYDASCYDVSDILREVKKDRAFFRYGG 128

Query: 87  YCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119
              L+GGEPLLQ D  L  ++A    G    +ET+
Sbjct: 129 GVTLSGGEPLLQADFALEILKACKAEGIHTTIETS 163


>gi|291517950|emb|CBK73171.1| pyruvate formate-lyase 1-activating enzyme [Butyrivibrio
           fibrisolvens 16/4]
          Length = 244

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPL 103
           +C FC       +G +G ++  D+L            K G    ++GGEPLLQ+D  + L
Sbjct: 34  RCAFCHNPETWKEG-QGQQFTADELLKKALRFKPY-WKNGGGITVSGGEPLLQIDFVLDL 91

Query: 104 IQALNKRGFEIAVETNG---TIEPPQGIDW 130
            +    +G    ++T G   T + P    W
Sbjct: 92  FKKAKAQGINTCIDTAGQPFTHDEPFYSKW 121


>gi|253688115|ref|YP_003017305.1| pyruvate formate-lyase activating enzyme [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251754693|gb|ACT12769.1| pyruvate formate-lyase activating enzyme [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 246

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 56/181 (30%), Gaps = 38/181 (20%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F  F GC             +C +C   DT         G    V++L   +       
Sbjct: 25  IF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKEVVTYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKA 137
              G     +GGE +LQ +      +A    G    ++TNG        ID  + VS   
Sbjct: 68  NASGGGVTASGGEAILQAEFVRDWFRACKAEGINTCLDTNGFVRRYDPVIDELLDVSDLV 127

Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197
             DLK            Q  V   N+   DF R+          + N    I Y    P 
Sbjct: 128 MLDLKQMNDD-----IHQNLVGVSNHRTLDFARY--------LAKRNQRTWIRYVVV-PG 173

Query: 198 W 198
           W
Sbjct: 174 W 174


>gi|226310331|ref|YP_002770225.1| hypothetical protein BBR47_07440 [Brevibacillus brevis NBRC 100599]
 gi|226093279|dbj|BAH41721.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 291

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C FC          +G  +  V+  A  ++E     +    +   
Sbjct: 15  CNL-----------ACTFC------PPTERGKSFIKVEDFAKRLDEIKPHTDYIYLHVK- 56

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
             GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 57  --GEPLLHPKIDELLDISHEKGFKVNITTNGTL 87


>gi|114563644|ref|YP_751157.1| pyruvate formate lyase-activating enzyme 1 [Shewanella
           frigidimarina NCIMB 400]
 gi|114334937|gb|ABI72319.1| pyruvate formate-lyase activating enzyme [Shewanella frigidimarina
           NCIMB 400]
          Length = 245

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 63/203 (31%), Gaps = 46/203 (22%)

Query: 1   MKLYSI--KEIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFC---D 51
           M L  I   E F T+ G G          R      GC             +C++C   D
Sbjct: 1   MTLGRIHSVESFGTVDGPG---------IRYIAFMQGC-----------LMRCQYCHNRD 40

Query: 52  TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNK 109
           T         G   +VD++   +       E  G     +GGE +LQ      L +A   
Sbjct: 41  T----WDLDGGKEVSVDEIMSQVISYQPFLEASGGGITASGGEAILQAQFVSELFKACKS 96

Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
           +G    ++TNG +   + +           D  +     + L   Q++ +    +     
Sbjct: 97  QGVHTCLDTNGFVRKYEPV----------IDELLDNTDLVLLDIKQMDDAKHIELTKVSN 146

Query: 170 RFSLQPMDGPFLEENTNLAISYC 192
             +LQ         N    I Y 
Sbjct: 147 HRTLQFA-QYLATRNIKTWIRYV 168


>gi|219853617|ref|YP_002470739.1| hypothetical protein CKR_0274 [Clostridium kluyveri NBRC 12016]
 gi|219567341|dbj|BAH05325.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 266

 Score = 48.1 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 29/122 (23%)

Query: 21  GRVA-VFCRFSGCNLWSGREQDRLSAQCRFC----DTDFV--------GIQGTKGGRYNV 67
           G    +F  F GC             +C +C       +         G +   G +Y +
Sbjct: 26  GVRTTIF--FKGCP-----------IRCMWCHNPESQKYKPEVMKNRDGKEEMIGKQYTI 72

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIAVETNGTIEP 124
            QL  +++   I  ++ G    L+GGE + Q       L++  ++ G  + ++T G + P
Sbjct: 73  KQLVKIVQADQIFYDQSGGGVTLSGGEVMTQDMDYIEELVKEFHRIGISVVIDTCGVVPP 132

Query: 125 PQ 126
             
Sbjct: 133 SN 134


>gi|52549916|gb|AAU83765.1| pyruvate-formate lyase-activating enzyme [uncultured archaeon
           GZfos33H6]
          Length = 230

 Score = 48.1 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 18/100 (18%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF    GCN            +C +C       +      ++       I     T   +
Sbjct: 22  VF--TQGCNF-----------KCPYC----HNPELVDPKLFSHPIPEADIFAFLQTRRGK 64

Query: 85  GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
                +TGGEP LQ D+    + +    F + ++TNG+  
Sbjct: 65  LDAVEITGGEPTLQPDLIDFTKKIKSLNFLVKLDTNGSNP 104


>gi|330446644|ref|ZP_08310296.1| pyruvate formate-lyase 1-activating enzyme [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328490835|dbj|GAA04793.1| pyruvate formate-lyase 1-activating enzyme [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 246

 Score = 48.1 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 52/160 (32%), Gaps = 35/160 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT         G    VD+L    +      
Sbjct: 25  VF--LQGC-----------LMRCQYCHNRDT----WDTHGGREATVDELMHEAKSYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWICVS 134
              G     +GGE +LQ +      +A    G    ++TNG     T    + +D     
Sbjct: 68  NSSGGGVTASGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRKHTDVIDEVLD----- 122

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
                DL +   +++     Q  V   N    DF R+  Q
Sbjct: 123 ---ATDLVMLDLKQMDDSIHQNLVGVPNKRVLDFARYLHQ 159


>gi|313884260|ref|ZP_07818026.1| pyruvate formate-lyase 1-activating enzyme [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620707|gb|EFR32130.1| pyruvate formate-lyase 1-activating enzyme [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 256

 Score = 48.1 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 49/125 (39%), Gaps = 38/125 (30%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC L           +C FC   DT       
Sbjct: 15  TESFGSVDGPG---------IRFVTFMQGCRL-----------RCEFCHNPDT----WNT 50

Query: 60  TKGGRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIA 115
             G  Y   QL  + I+ +   GEK G    ++GGEP+LQ+D  LI+      + G    
Sbjct: 51  FGGHEYTAQQLFDEAIKYRAFWGEKGG--VTVSGGEPMLQIDF-LIEYFKICKEHGVNTT 107

Query: 116 VETNG 120
           ++T G
Sbjct: 108 LDTCG 112


>gi|300087564|ref|YP_003758086.1| radical SAM domain-containing protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527297|gb|ADJ25765.1| Radical SAM domain protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 392

 Score = 48.1 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         ++ C                     Q  + I+      E      + +
Sbjct: 46  CNLHCIHCYASATSNCS-------------PEEVTTGQAKEFIK---GLAEFGVPVLLFS 89

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D+  L       G  +A+ TNGT+
Sbjct: 90  GGEPLLRDDLFELASFARDNGLRVALSTNGTL 121


>gi|313904097|ref|ZP_07837477.1| glycyl-radical enzyme activating protein family [Eubacterium
           cellulosolvens 6]
 gi|313471246|gb|EFR66568.1| glycyl-radical enzyme activating protein family [Eubacterium
           cellulosolvens 6]
          Length = 291

 Score = 47.7 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           G     D++ D + +     E  G    L+GGEPL+Q D    ++Q     G    +ET 
Sbjct: 101 GKEMTADEVLDEVLKDRAFYETSGGGITLSGGEPLMQPDFACEILQKAAAAGIHRTIETC 160

Query: 120 G 120
           G
Sbjct: 161 G 161


>gi|257869695|ref|ZP_05649348.1| pyruvate formate-lyase activating enzyme [Enterococcus gallinarum
           EG2]
 gi|257803859|gb|EEV32681.1| pyruvate formate-lyase activating enzyme [Enterococcus gallinarum
           EG2]
          Length = 251

 Score = 47.7 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 43/121 (35%), Gaps = 30/121 (24%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
            E F ++ G G          RF     GC             +C FC        G   
Sbjct: 10  TESFGSVDGPG---------IRFIVFMQGC-----------RMRCEFCHNPDTWKIGAGI 49

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETN 119
            R   D L + ++ +   GEK G     +GGEPLLQ+D  LI         G    ++T 
Sbjct: 50  ERTTDDVLEEALKYREFWGEKGGLTV--SGGEPLLQLDF-LIDLFRKAKAAGVNTTLDTC 106

Query: 120 G 120
           G
Sbjct: 107 G 107


>gi|261821276|ref|YP_003259382.1| pyruvate formate lyase-activating enzyme 1 [Pectobacterium wasabiae
           WPP163]
 gi|261605289|gb|ACX87775.1| pyruvate formate-lyase activating enzyme [Pectobacterium wasabiae
           WPP163]
          Length = 246

 Score = 47.7 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 56/181 (30%), Gaps = 38/181 (20%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F  F GC             +C +C   DT         G    V++L   +       
Sbjct: 25  IF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKEVVTYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKA 137
              G     +GGE +LQ +      +A    G    ++TNG        ID  + VS   
Sbjct: 68  NASGGGVTASGGEAILQAEFVRDWFRACKAEGINTCLDTNGFVRRYDPVIDELLDVSDLV 127

Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197
             DLK            Q  V   N+   DF R+          + N    I Y    P 
Sbjct: 128 MLDLKQMNDD-----IHQNLVGVSNHRTLDFARY--------LAKRNQRTWIRYVVV-PG 173

Query: 198 W 198
           W
Sbjct: 174 W 174


>gi|148381163|ref|YP_001255704.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A
           str. ATCC 3502]
 gi|153930820|ref|YP_001385538.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A
           str. ATCC 19397]
 gi|153935264|ref|YP_001388944.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A
           str. Hall]
 gi|148290647|emb|CAL84776.1| formate-lyase activating enzyme [Clostridium botulinum A str. ATCC
           3502]
 gi|152926864|gb|ABS32364.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A
           str. ATCC 19397]
 gi|152931178|gb|ABS36677.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A
           str. Hall]
          Length = 232

 Score = 47.7 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 23/101 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G   + D++   +       
Sbjct: 22  VF--FQGC-----------QLRCVYCHNPDT----WDFNAGIEISSDEVLKKVLRYKPY- 63

Query: 82  EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
            K+      +GGEPL+Q    + +++    +    A++T+G
Sbjct: 64  FKQVGGITCSGGEPLMQPEFLLEILKKCKNQSIHTALDTSG 104


>gi|153952959|ref|YP_001393724.1| glycyl radical activating protein [Clostridium kluyveri DSM 555]
 gi|146345840|gb|EDK32376.1| Predicted glycyl radical enzyme activator [Clostridium kluyveri DSM
           555]
          Length = 258

 Score = 47.7 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 29/122 (23%)

Query: 21  GRVA-VFCRFSGCNLWSGREQDRLSAQCRFC----DTDFV--------GIQGTKGGRYNV 67
           G    +F  F GC             +C +C       +         G +   G +Y +
Sbjct: 18  GVRTTIF--FKGCP-----------IRCMWCHNPESQKYKPEVMKNRDGKEEMIGKQYTI 64

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIAVETNGTIEP 124
            QL  +++   I  ++ G    L+GGE + Q       L++  ++ G  + ++T G + P
Sbjct: 65  KQLVKIVQADQIFYDQSGGGVTLSGGEVMTQDMDYIEELVKEFHRIGISVVIDTCGVVPP 124

Query: 125 PQ 126
             
Sbjct: 125 SN 126


>gi|20090379|ref|NP_616454.1| hypothetical protein MA1520 [Methanosarcina acetivorans C2A]
 gi|19915387|gb|AAM04934.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 219

 Score = 47.7 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 28/150 (18%)

Query: 41  DRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GE 94
           +R SA C FC     D  + G           +++ + +E   ++  +E    V TG GE
Sbjct: 29  NRCSADCVFCIRNFADGVY-GYDLRLSKEPTTEEILEALEGLDLSNYRE---VVFTGLGE 84

Query: 95  PLLQVDVPL--IQALNKRGFEIAVETNGTIEPP------------QGIDWICVSPKAGCD 140
           P L+ DV L   + L  RG  + ++TNG                  G+D+I VS  A  +
Sbjct: 85  PTLRFDVVLAVTRWLKSRGIRVRLDTNGHAALINPELDVVSELKNAGMDFISVSLNAESE 144

Query: 141 LKIKGGQEL-KLVFPQVNVSPENYIGFDFE 169
            K     +L + V         +++    E
Sbjct: 145 EKY---NKLCRPVHKNAYREILDFVKKAGE 171


>gi|312792558|ref|YP_004025481.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312877157|ref|ZP_07737127.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796057|gb|EFR12416.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|312179698|gb|ADQ39868.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 231

 Score = 47.7 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 28/152 (18%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           F GCN             C FC   +        G +  D +     E     +      
Sbjct: 23  FGGCNF-----------SCPFC---YNSQLVNFKGSFMDDSI---FFEYLDKRKGIVDAV 65

Query: 89  VLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGC 139
            +TGGEP L        I+ +  R   + ++TNG+             +D++ +  KA  
Sbjct: 66  CITGGEPTLNEEYLTEFIKKIKNRSLLVKLDTNGSRPEVLQRLLDAGLLDYVAMDVKAPL 125

Query: 140 D--LKIKGGQELKLVFPQVNVSPENYIGFDFE 169
           +   +I G  ++  +   V +   + I ++F 
Sbjct: 126 EKYPQITGFSDIDKIKKSVEILKNSNIDYEFR 157


>gi|238019931|ref|ZP_04600357.1| hypothetical protein VEIDISOL_01807 [Veillonella dispar ATCC 17748]
 gi|237863455|gb|EEP64745.1| hypothetical protein VEIDISOL_01807 [Veillonella dispar ATCC 17748]
          Length = 258

 Score = 47.7 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 28/114 (24%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEK 83
           VF    GC +           +C +C       + +   +   V++L D  E        
Sbjct: 23  VF--LQGCPM-----------RCAYCHNPDTWNETSDDAKFMTVEELWDQYERNRQFYTN 69

Query: 84  EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP 135
            G    +TGGE L+Q+D    L     +R     ++T+G          IC  P
Sbjct: 70  GG--ITVTGGEALMQIDFVTELFTYFRERNVHTCLDTSG----------ICFDP 111


>gi|167760148|ref|ZP_02432275.1| hypothetical protein CLOSCI_02520 [Clostridium scindens ATCC 35704]
 gi|167662273|gb|EDS06403.1| hypothetical protein CLOSCI_02520 [Clostridium scindens ATCC 35704]
          Length = 288

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG---RYNVDQLADLIEEQWITG--EKEGR 86
           C   + RE     A C  C+      Q    G    Y  + + ++I E         +G 
Sbjct: 57  CPHHAIREHKVDRAICDSCEGKECIRQHDTKGMYLSYKEETVEEVIGEACANEMMFYDGG 116

Query: 87  YCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGI 128
               TGGE  +Q       ++ L ++    A+ETNGT      +
Sbjct: 117 GVTFTGGEATVQFQELTDALKGLKEKDIHTAIETNGTHPRLPEL 160


>gi|260772500|ref|ZP_05881416.1| pyruvate formate-lyase activating enzyme [Vibrio metschnikovii CIP
           69.14]
 gi|260611639|gb|EEX36842.1| pyruvate formate-lyase activating enzyme [Vibrio metschnikovii CIP
           69.14]
          Length = 246

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 37/159 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G   +V+++    +    
Sbjct: 21  IRFILFLQGC-----------LFRCKYCHNRDT----WDTHSGKEVSVEEIIKEAKSYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWIC 132
                G     +GGE +LQ +    + +A    G    ++TNG     T    + +D   
Sbjct: 66  FMNASGGGITCSGGESMLQPEFVRDVFRAAKAEGIHTCLDTNGYIRKYTPVIDEVLDV-- 123

Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
                  DL +   +++K    Q  +   N    DF R+
Sbjct: 124 ------TDLVLLDIKQIKDDVHQDLIGVSNKRTLDFARY 156


>gi|256752118|ref|ZP_05492985.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749027|gb|EEU62064.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 136

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 27/126 (21%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
             VF   SGCN            +C +C   ++       G  +  +  D ++++    E
Sbjct: 19  ATVFV--SGCNF-----------KCPYCHNSYLIQIRE--GIRSEKEFFDYLKKRANLIE 63

Query: 83  KEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS 134
                  +TGGEP L   +   I+ +    FE+ ++TNG+             +D+I + 
Sbjct: 64  G----VCITGGEPTLWKGLKDFIKNIKDLNFEVKLDTNGSRPQVLENLLDEGLLDYIAMD 119

Query: 135 PKAGCD 140
            KA  +
Sbjct: 120 IKAPIE 125


>gi|269121318|ref|YP_003309495.1| pyruvate formate-lyase activating enzyme [Sebaldella termitidis
           ATCC 33386]
 gi|268615196|gb|ACZ09564.1| pyruvate formate-lyase activating enzyme [Sebaldella termitidis
           ATCC 33386]
          Length = 241

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 25/103 (24%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C +C   DT        K      ++    I    +
Sbjct: 19  IRFVLFLQGCPL-----------RCLYCHNVDT---WDLKNKKYMLTPEETMHEIS--KV 62

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
            G  +     ++GGEPLLQ +  + L +   +     A++T+G
Sbjct: 63  RGFIKSGGLTVSGGEPLLQPEFILELFKLCREEKIHTAIDTSG 105


>gi|300694473|ref|YP_003750446.1| ribonucleotide reductase activating transmembrane protein (nrdg)
           [Ralstonia solanacearum PSI07]
 gi|299076510|emb|CBJ35835.1| putative ribonucleotide reductase activating transmembrane protein
           (nrdG) [Ralstonia solanacearum PSI07]
          Length = 248

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 28/128 (21%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G++A  VF   +GC             +C +C    + ++     R +  Q+   ++ + 
Sbjct: 46  GQLAAVVFI--AGCP-----------WRCHYCHNPHLQLRE---RRLHWTQVMAFLQRRR 89

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
              +      V +GGEPL +  +P LI A+ + GF+  + T G            +DW+ 
Sbjct: 90  TLLDA----VVFSGGEPLSEPRLPQLIAAVRELGFKAGLHTGGIYPARLAAVLPMLDWVG 145

Query: 133 VSPKAGCD 140
           +  K    
Sbjct: 146 LDIKTTAS 153


>gi|298674278|ref|YP_003726028.1| radical SAM domain-containing protein [Methanohalobium evestigatum
           Z-7303]
 gi|298287266|gb|ADI73232.1| Radical SAM domain protein [Methanohalobium evestigatum Z-7303]
          Length = 399

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       +        D D+     T  G+  +D LA+                + +
Sbjct: 50  CNLKCAHCYAQSQ------DIDYSDELTTNEGKELIDDLAE----------FGSPVILFS 93

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122
           GGEPL+      L++    +G    + TNGT+
Sbjct: 94  GGEPLMRHDLFELVRYARSKGIRAVISTNGTL 125


>gi|295099948|emb|CBK89037.1| glycyl-radical enzyme activating protein family [Eubacterium
           cylindroides T2-87]
          Length = 298

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 6/90 (6%)

Query: 37  GREQDRLSAQCRFCDTDFVGIQ----GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
             E       C+ C+T             G    ++++  ++ +     +       ++G
Sbjct: 71  DPEFKWNPQTCQHCNTCVENCPLEALEFSGKSMEIEEIVKIVLKDIDYYKNSQGGVTISG 130

Query: 93  GEPLLQ--VDVPLIQALNKRGFEIAVETNG 120
           GE  +Q    + L++ L K    +A+ET G
Sbjct: 131 GEAFVQFDALIELLKTLKKHDLHVAIETTG 160


>gi|308271162|emb|CBX27771.1| hypothetical protein N47_C18290 [uncultured Desulfobacterium sp.]
          Length = 230

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 68/188 (36%), Gaps = 37/188 (19%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +F   SGCN             C +C          +  + N   +    E       ++
Sbjct: 22  IF--TSGCNF-----------ACPYC-------HNPELAKNNPSVILKETEIYDFLKNRK 61

Query: 85  GRY--CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVS 134
                 V++GGEP +   +  + + +   G+ + ++TNG+           + ID+I + 
Sbjct: 62  NFLDGVVISGGEPTIHSGIYAVCKNIKAIGYPVKLDTNGSNPEVIKNLIEKELIDYIAMD 121

Query: 135 PKAG---CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP-MDGPFLEENTNL--- 187
            K          K       +   + +   + I ++F   S++P +D   +E+ + +   
Sbjct: 122 IKTDPNRYSYFTKSASVSANILSSIQIIMNSKIDYEFRTTSVKPFVDVSVIEKISKIIAG 181

Query: 188 AISYCFQN 195
           A  Y  Q+
Sbjct: 182 ANRYVLQH 189


>gi|256376543|ref|YP_003100203.1| pyruvate formate-lyase activating enzyme [Actinosynnema mirum DSM
           43827]
 gi|255920846|gb|ACU36357.1| pyruvate formate-lyase activating enzyme [Actinosynnema mirum DSM
           43827]
          Length = 281

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 16/98 (16%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF   SGC L           +C +C       +   G     +++    E      +  
Sbjct: 64  VF--TSGCPL-----------RCLYCQNPETW-KMRDGTVVTAEEIMAEAEPYRRFIQVA 109

Query: 85  GRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
           G    ++GGEPLLQ      L +   + G   A++T+G
Sbjct: 110 GGGFTVSGGEPLLQPVFTGELFRRAKEWGMHTALDTSG 147


>gi|291556337|emb|CBL33454.1| Pyruvate-formate lyase-activating enzyme [Eubacterium siraeum
           V10Sc8a]
          Length = 237

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 19/125 (15%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
            RF     GC L  G   +  +               + G    V  + + +        
Sbjct: 19  VRFVLFLQGCPLRCGYCHNPETR------------DASGGKTATVKDVMEKVLRCRNYFG 66

Query: 83  KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140
           K G    ++GGEPL+Q      L +   ++G    ++T+G I      + + V+     D
Sbjct: 67  KNGG-ITVSGGEPLMQAKFVTELFKECKRQGINTCLDTSGCIMNDDVTELLKVTDLCMLD 125

Query: 141 LKIKG 145
           +K+  
Sbjct: 126 IKMTN 130


>gi|116749858|ref|YP_846545.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698922|gb|ABK18110.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 347

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR C          +     +D+   + ++       E    V T
Sbjct: 20  CNL-----------RCRHC---ASSAGEARSNELTLDEALAICDQLPPLLVLE---VVFT 62

Query: 92  GGEPLLQVDVPLI-QALNKRGFEIAVETNGTI 122
           GGEPLL      I + L + G  + V TNGT+
Sbjct: 63  GGEPLLSPHWEAIARRLRELGIHVGVVTNGTL 94


>gi|303243865|ref|ZP_07330205.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
 gi|302485801|gb|EFL48725.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
          Length = 212

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 17/103 (16%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLI 104
           C +C      ++ T       +++ + I+  +          V++GGEP LQ      L 
Sbjct: 3   CGYCHNYEHMLENTH--EMTPEEVFNSIDLMFAEA------IVISGGEPTLQPKALKELC 54

Query: 105 QALNKRGFEIAVETNGT-IEPPQG------IDWICVSPKAGCD 140
               ++GF + ++TNGT IE  +       ID+I +  K   D
Sbjct: 55  IIAKRKGFPVKLDTNGTNIEIIKDLIDNKLIDYIALDVKCAFD 97


>gi|282855537|ref|ZP_06264856.1| pyruvate formate-lyase 1-activating enzyme [Pyramidobacter
           piscolens W5455]
 gi|282586680|gb|EFB91929.1| pyruvate formate-lyase 1-activating enzyme [Pyramidobacter
           piscolens W5455]
          Length = 286

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 27/112 (24%)

Query: 7   KEIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        +F  F GC           + +CR+C   DT         G
Sbjct: 17  TESFGSVDGPGVRFV----IF--FKGC-----------AMRCRYCHNPDT----WGCRGG 55

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
                 +L D  E       KEG    ++GGEPLLQ+D  L++   +    +
Sbjct: 56  ELKTAAELLDRAERYRSYWGKEGG-ITVSGGEPLLQIDF-LLELFREAKKRV 105


>gi|210134970|ref|YP_002301409.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           P12]
 gi|226704820|sp|B6JM01|MOAA_HELP2 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|210132938|gb|ACJ07929.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           P12]
          Length = 321

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 61/172 (35%), Gaps = 27/172 (15%)

Query: 46  QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102
           +C++C   T      G       +D + + ++     G K+ R   +TGGEPLL+     
Sbjct: 24  RCQYCMPATPLDFFDGE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDE 78

Query: 103 LIQALNKRGFEIA--VETNGTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQELK 150
            I  L+    E+A  + TNG +      D        + V   S K+   LKI     LK
Sbjct: 79  FIAKLHAYNKEVALVLSTNGFLLKKMAKDLKNAGLSRVNVSLDSLKSDRVLKISQKDALK 138

Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
                +  S +  +           M     +E   L + Y       R+ +
Sbjct: 139 NALEGIEESLKVGLKLKLNTVV---MKSVNDDEILEL-LEYAKNR---RIQI 183


>gi|39995791|ref|NP_951742.1| radical SAM domain-containing protein [Geobacter sulfurreducens
           PCA]
 gi|39982555|gb|AAR34015.1| radical SAM domain protein [Geobacter sulfurreducens PCA]
          Length = 332

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL              + DT              + Q+  L E      E       +T
Sbjct: 38  CNLACSGCGRIRE----YADT--------------IQQMMSLEECLRSVDECPAPVVTIT 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEP L   +  LI  +  RG  + + TNG +   + ++ + V P    ++ + G +E
Sbjct: 80  GGEPFLYTHIYELIPEVLDRGKHVYLCTNG-LLLEKALENVKVHPNFYLNVHMDGLEE 136


>gi|315925679|ref|ZP_07921888.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315620997|gb|EFV00969.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 262

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 21/98 (21%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDF--------VGIQGTKGGRYNVDQLADLIEEQWITGE 82
           GC+L           +C +C T               T G    V+++   + +      
Sbjct: 36  GCHL-----------RCAWCSTPESQPFEIQTTAEDQTYGEVMTVEEVLKEVRKDIPFYF 84

Query: 83  KEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118
             G    ++GGE + Q D    L+Q   K G   A+ET
Sbjct: 85  HSGGGMTVSGGEMMAQPDFARCLLQQAQKEGINTAIET 122


>gi|302870990|ref|YP_003839626.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302573849|gb|ADL41640.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 231

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 55/153 (35%), Gaps = 30/153 (19%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
           F GCN             C FC ++  V  +G            ++  E     +     
Sbjct: 23  FGGCNF-----------SCPFCYNSQLVNFKGEFMDD-------NIFFEYLDKRKGIVDA 64

Query: 88  CVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAG 138
             +TGGEP L        I+ +  R   + ++TNG+             +D++ +  KA 
Sbjct: 65  VCITGGEPTLNEEYLTEFIKKIKNRSLLVKLDTNGSRPEVLQRLLDAGLLDYVAMDVKAP 124

Query: 139 CD--LKIKGGQELKLVFPQVNVSPENYIGFDFE 169
            +   +I G  ++  +   + +   + I ++F 
Sbjct: 125 LEKYPQITGFSDVDKIRRSIEILKNSNIDYEFR 157


>gi|298504799|gb|ADI83522.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase,
           DUF3463-containing [Geobacter sulfurreducens KN400]
          Length = 332

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL              + DT              + Q+  L E      E       +T
Sbjct: 38  CNLACSGCGRIRE----YADT--------------IQQMMSLEECLRSVDECPAPVVTIT 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEP L   +  LI  +  RG  + + TNG +   + ++ + V P    ++ + G +E
Sbjct: 80  GGEPFLYTHIYELIPEVLDRGKHVYLCTNG-LLLEKALENVKVHPNFYLNVHMDGLEE 136


>gi|195541979|gb|ACF98177.1| putative heme D1 biosynthesis protein NirJ [uncultured bacterium
           2303]
          Length = 412

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         +      D DF G   T      +D L                  +L+
Sbjct: 36  CNLACQHCYSISA------DVDFPGELATPDIYRTMDDL----------KAFGVPVLILS 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL  D+  + Q     GF + + TNGT+
Sbjct: 80  GGEPLLHPDIFAISQRAKAMGFYVGLSTNGTL 111


>gi|22297770|ref|NP_681017.1| pyruvate formate lyase activating enzyme [Thermosynechococcus
           elongatus BP-1]
 gi|22293947|dbj|BAC07779.1| pyruvate formate lyase activating enzyme [Thermosynechococcus
           elongatus BP-1]
          Length = 254

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 24/123 (19%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC L           +C +C   D      +  +G    VD+L   I+      
Sbjct: 38  IF--TQGCPL-----------RCLYCHNPD----CREPHQGKLVTVDELIADIQHYQSYL 80

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139
            + G     +GGEPL+Q +    + +  ++ G   A++T+G +        + V+     
Sbjct: 81  RQGG--VTASGGEPLMQPEFVREIFERCHELGLHTALDTSGYVLLEAAKPVVAVTDLVLL 138

Query: 140 DLK 142
           D+K
Sbjct: 139 DIK 141


>gi|281420400|ref|ZP_06251399.1| pyruvate formate-lyase 1-activating enzyme [Prevotella copri DSM
           18205]
 gi|281405545|gb|EFB36225.1| pyruvate formate-lyase 1-activating enzyme [Prevotella copri DSM
           18205]
          Length = 248

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 34/121 (28%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F ++ G G          RF     GC +           +C+FC   D+   G+   
Sbjct: 15  ESFGSVDGPG---------IRFLIFLQGCPM-----------RCQFCHNPDSWKTGV--- 51

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
            G  ++ D L D  E        +     ++GGE L+Q+D  + L +  ++RG    ++T
Sbjct: 52  -GEEWSADDLLDKAERFKSY-WGDKGGITVSGGEALMQIDFLIELFEKAHQRGINTCLDT 109

Query: 119 N 119
           +
Sbjct: 110 S 110


>gi|207738919|ref|YP_002257312.1| ribonucleotide reductase activating protein [Ralstonia solanacearum
           IPO1609]
 gi|206592290|emb|CAQ59196.1| ribonucleotide reductase activating protein [Ralstonia solanacearum
           IPO1609]
          Length = 222

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 28/128 (21%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G++A  VF   +GC             +C +C          +    +  Q+   ++ + 
Sbjct: 20  GQLAAVVFI--AGCP-----------WRCHYC---HNPHLQARERHLHWTQVMAFLQSRR 63

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
              +      V +GGEPL +  +P LI A+   GF+  + T G            +DW+ 
Sbjct: 64  ALLDA----VVFSGGEPLSEPRLPQLIAAVRALGFKTGLHTAGIYPARLAAVLPMLDWVG 119

Query: 133 VSPKAGCD 140
           +  K    
Sbjct: 120 LDIKTTAS 127


>gi|303231037|ref|ZP_07317779.1| pyruvate formate-lyase 1-activating enzyme [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514301|gb|EFL56301.1| pyruvate formate-lyase 1-activating enzyme [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 261

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 32/116 (27%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC +           +C +C   DT     +  +     V+++    E      
Sbjct: 23  VF--LQGCPM-----------RCAYCHNPDT--WNEESQEAKFMTVEEIWQQYERNRQFY 67

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP 135
              G    +TGGE L+Q+D  + L    ++R     ++T+G          IC  P
Sbjct: 68  TNGG--ITVTGGEALMQIDFVIELFTYFSERNVHTCLDTSG----------ICFDP 111


>gi|312136355|ref|YP_004003692.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanothermus fervidus DSM 2088]
 gi|311224074|gb|ADP76930.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanothermus fervidus DSM 2088]
          Length = 230

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 27/121 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +F  F+GC L           +C +C           G   +V+     I+ +  + +  
Sbjct: 21  IF--FAGCPL-----------RCPYC---HNPELLKNGKDIDVES----IKRKISSSKDF 60

Query: 85  GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKA 137
               VL+GGEPL Q      +++     G +  ++TNG          + +D++ +  KA
Sbjct: 61  IDAVVLSGGEPLFQEKEVEEILKHAYSLGLKTKLDTNGIYPKKLNSIIKYLDYVSLDVKA 120

Query: 138 G 138
            
Sbjct: 121 P 121


>gi|260768897|ref|ZP_05877831.1| pyruvate formate-lyase activating enzyme [Vibrio furnissii CIP
           102972]
 gi|260616927|gb|EEX42112.1| pyruvate formate-lyase activating enzyme [Vibrio furnissii CIP
           102972]
 gi|315180593|gb|ADT87507.1| pyruvate formate lyase-activating enzyme 1 [Vibrio furnissii NCTC
           11218]
          Length = 246

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 36/162 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   DT         G   +V+++    +      
Sbjct: 25  IF--LQGC-----------LFRCKYCHNRDT----WDTHTGKEVSVEEIIAEAKSYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWICVS 134
              G     +GGE +LQ +      +A    G    ++TNG     T    + +D     
Sbjct: 68  NASGGGVTCSGGESMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRKYTPVIDEVLDV---- 123

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
                DL +   ++++    Q  +   N    DF R  LQ M
Sbjct: 124 ----TDLVMLDIKQMQDEIHQDLIGVSNKRTLDFAR-YLQKM 160


>gi|225387044|ref|ZP_03756808.1| hypothetical protein CLOSTASPAR_00794 [Clostridium asparagiforme
           DSM 15981]
 gi|225046862|gb|EEG57108.1| hypothetical protein CLOSTASPAR_00794 [Clostridium asparagiforme
           DSM 15981]
          Length = 321

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 15/120 (12%)

Query: 62  GGRYNVDQLADLI---EEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQALNKR--GFEI 114
           G  Y V +L + I   +E +   + EGR     LTGGEP+ Q   P ++ L     G  +
Sbjct: 120 GREYTVGELKEQILVDQEYYRVKDGEGRTGGVTLTGGEPMSQ--FPFVERLLDELDGIHV 177

Query: 115 AVETNGTIE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
            +ET+G             +D      KA    K +    +     Q N+      G D 
Sbjct: 178 CMETSGFAPEEQFARLLGKVDLFLFDCKATDPEKHRELCGVDNRLIQSNLKFLCDHGADI 237


>gi|51244117|ref|YP_064001.1| hypothetical protein DP0265 [Desulfotalea psychrophila LSv54]
 gi|50875154|emb|CAG34994.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 449

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 15/103 (14%)

Query: 31  GCNLWSGREQDRLSAQCR------F-CDTD----FVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G         C       + CD      F           +  +++ L+E   +
Sbjct: 72  GCPYDCGLCAAHGQHTCTALLEVTWRCDLGCPVCFASSGKKAAPDPSQAEISQLLERVEL 131

Query: 80  TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFE-IAVETNG 120
                     L+GGEP ++ D+  LI    KRGF  I + TNG
Sbjct: 132 ASGFC--NIQLSGGEPTMRDDLAELIALAKKRGFPFIQLNTNG 172


>gi|301324930|ref|ZP_07218489.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 78-1]
 gi|300848181|gb|EFK75941.1| glycyl-radical enzyme activating family protein [Escherichia coli
           MS 78-1]
          Length = 279

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 11  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 66  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G    +ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 126 LQRLRLWGVSCTIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 182


>gi|149194702|ref|ZP_01871797.1| putative radical-activating enzyme [Caminibacter mediatlanticus
           TB-2]
 gi|149135125|gb|EDM23606.1| putative radical-activating enzyme [Caminibacter mediatlanticus
           TB-2]
          Length = 222

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 26/118 (22%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           FSGCN+           +C +C    +     +  +       D + E   T        
Sbjct: 25  FSGCNM-----------RCPYCYNKDIVFGKKQIEK-------DEVIEFLKTRVGLLDGV 66

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG-------TIEPPQGIDWICVSPKAG 138
           V TGGE  L  D+ P  + +   GFEI ++TNG        +   + +D+I +  KA 
Sbjct: 67  VFTGGEATLYKDIVPFAKKIKNLGFEIKLDTNGINFEVIKELIDKKLVDYIALDFKAP 124


>gi|77918997|ref|YP_356812.1| glycerol dehydratase activating enzyme [Pelobacter carbinolicus DSM
           2380]
 gi|77545080|gb|ABA88642.1| glycerol dehydratase, cobalamin-independent, small subunit
           [Pelobacter carbinolicus DSM 2380]
          Length = 322

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 34  LWSGREQDRLSAQC-RFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           L   R++  L  QC +FC   + G     G   +V +L  +IE      E+       +G
Sbjct: 98  LIIDRDRCTLCGQCAKFC---YAGAINIIGRYLSVPELVTMIERDRKFYEQSNGGVTFSG 154

Query: 93  GEPLLQVDV--PLIQALNKRGFEIAVETN 119
           GEP  Q +     +QA+  RG   A+ET+
Sbjct: 155 GEPTAQPEFLKAALQAIQARGIHTAIETS 183


>gi|229830129|ref|ZP_04456198.1| hypothetical protein GCWU000342_02236 [Shuttleworthia satelles DSM
           14600]
 gi|229791427|gb|EEP27541.1| hypothetical protein GCWU000342_02236 [Shuttleworthia satelles DSM
           14600]
          Length = 248

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 29/121 (23%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G  +     +F    GCN+           +CR+C   DT          
Sbjct: 9   VESFGSVDGPGIRYI----IF--LQGCNM-----------RCRYCHNVDT----WDIDDV 47

Query: 63  GRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
             YN  + + L+++        G+     ++GG+PLLQ+D  + L +   +R     ++T
Sbjct: 48  KNYNEQEASALLDQAERYRSYWGKEGGITVSGGDPLLQIDFLLELFRQAKERKINTCIDT 107

Query: 119 N 119
           +
Sbjct: 108 S 108


>gi|209521138|ref|ZP_03269865.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. H160]
 gi|209498413|gb|EDZ98541.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. H160]
          Length = 382

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +  +     + +++  L +     G ++ R   LTGGE
Sbjct: 58  DRCNFRCVYCMPRAVFDKDYAFLPHS--ALLSFEEIERLAQLFVAHGVEKIR---LTGGE 112

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ ++  LI+ L +      R  ++ + TNG++           G+  + VS  A  D
Sbjct: 113 PLLRKNLEFLIERLARLTTPAGRPLDLTLTTNGSLLARKARSLKDAGLTRVTVSLDALDD 172

Query: 141 LKIKGGQELKLVFPQV--NVSPENYIGFD 167
              +   +       V   ++  + +G  
Sbjct: 173 ALFRRMNDADFAVADVLDGIAAADAVGLA 201


>gi|329767660|ref|ZP_08259180.1| pyruvate formate-lyase 1-activating enzyme [Gemella haemolysans
           M341]
 gi|328839087|gb|EGF88673.1| pyruvate formate-lyase 1-activating enzyme [Gemella haemolysans
           M341]
          Length = 265

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 21/102 (20%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL-ADLIEEQWIT 80
           VF  F GC             +C++C   DT    +         VDQL  ++++ +   
Sbjct: 39  VF--FQGC-----------MLRCKYCHNPDT--WKMHNPDAKVMTVDQLTKEIVKYRDFF 83

Query: 81  GEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
              EG    ++GGE LLQ+D  + L + L K G    V+T G
Sbjct: 84  EASEGGGVTVSGGESLLQIDFILELFRELKKIGINTCVDTCG 125


>gi|323528299|ref|YP_004230451.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. CCGE1001]
 gi|323385301|gb|ADX57391.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. CCGE1001]
          Length = 431

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 19/135 (14%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVL 90
            LW   E   R    C FC   +  +  T   R  + D+   ++ E    G  +  +   
Sbjct: 23  PLWLLAELTYRCPLHCAFC---YNPVDYTGHNRELSTDEWLRVLREARALGAAQLGF--- 76

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
           +GGEPL++ D+  L++     GF   + T+G          I ++ K   DLK  G   +
Sbjct: 77  SGGEPLMRDDLEVLVREARSLGFYTNLITSG----------IGLTDKRLGDLKAAGLDHI 126

Query: 150 KLVFPQVNVSPENYI 164
           +L F        +++
Sbjct: 127 QLSFQDSTQELNDFL 141


>gi|257387604|ref|YP_003177377.1| molybdenum cofactor biosynthesis protein A [Halomicrobium
           mukohataei DSM 12286]
 gi|257169911|gb|ACV47670.1| molybdenum cofactor biosynthesis protein A [Halomicrobium
           mukohataei DSM 12286]
          Length = 348

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 13/94 (13%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR +  C +C      DT   G    +      D++  L++     G +  ++   TGGE
Sbjct: 20  DRCNFDCVYCHNEGLGDTR--GPMDPQDEEMTADEVIRLLDVVREFGVETAKF---TGGE 74

Query: 95  PLL-QVDVPLIQALNKRGFEIAVETNGTIEPPQG 127
           P+L Q  V +++     G E+++ TNGT  P + 
Sbjct: 75  PMLRQDLVEIVRRAPD-GMEVSMTTNGTFLPDRA 107


>gi|303247407|ref|ZP_07333680.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfovibrio fructosovorans JJ]
 gi|302491321|gb|EFL51210.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfovibrio fructosovorans JJ]
          Length = 222

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 44/132 (33%), Gaps = 30/132 (22%)

Query: 15  GEGGHAGRVAV-FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73
           GE       AV FCR  GC             +C +C    +     +      D L  L
Sbjct: 10  GE-----LAAVLFCR--GCP-----------WRCPYCHNATLRESDGEADEAFADTLPWL 51

Query: 74  IEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQG 127
              Q +         V +GGEP  Q  +P  + A+   GF+I + T G            
Sbjct: 52  ESRQGLLDA-----VVFSGGEPTAQPGLPAAMTAVRDLGFKIGLHTAGMFPDALADALPY 106

Query: 128 IDWICVSPKAGC 139
            DW+    KA  
Sbjct: 107 CDWVGCDIKAPA 118


>gi|256811295|ref|YP_003128664.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
 gi|256794495|gb|ACV25164.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
          Length = 466

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 31/136 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C+ C   +           N ++   +I+   I G         +
Sbjct: 123 CNL-----------RCKHC---YANAGKPLEDELNTEEAKKVID---ILGNAGVVALAFS 165

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
           GGEPL++ D+  LI      G  +++ TNGT+   + +             K+K   E+ 
Sbjct: 166 GGEPLMRKDLFDLINRAKDYGMSVSIATNGTLLTKENVK------------KLKE-HEVD 212

Query: 151 LVFPQVNVSPENYIGF 166
            +   ++ + E +  F
Sbjct: 213 FIQISLDGTKETHEKF 228


>gi|320526814|ref|ZP_08028004.1| pyruvate formate-lyase 1-activating enzyme [Solobacterium moorei
           F0204]
 gi|320132782|gb|EFW25322.1| pyruvate formate-lyase 1-activating enzyme [Solobacterium moorei
           F0204]
          Length = 242

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 29/104 (27%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLI---EEQW 78
           +F    GCN+           +C++C   DT     +   G  Y  +++       +  W
Sbjct: 23  IF--LKGCNM-----------RCKYCHNPDT----WEMAGGELYTAEEVLQKALRYKNYW 65

Query: 79  ITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           + G        ++GGE LLQ+D  + L +  +K+G    ++T G
Sbjct: 66  VNGGG----ITVSGGEALLQMDFMIELFELAHKQGIHCTLDTAG 105


>gi|291541305|emb|CBL14416.1| molybdenum cofactor biosynthesis protein A, bacterial [Roseburia
           intestinalis XB6B4]
          Length = 345

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 23/164 (14%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR + +C++C   D +   ++         +++  + E     G    R+  LTGGEPL+
Sbjct: 18  DRCNLRCKYCMPGDIETTDME----NLLTYEEIVQVTEAAAALG---IRHIRLTGGEPLV 70

Query: 98  QVD-VPLIQALNK-RGFE-IAVETNGTIEP-------PQGIDWICVSPKAGCDL---KIK 144
           +   V L++ +    G E + + TNG +           G+D + VS     +    ++ 
Sbjct: 71  RRGCVDLVEKIKNVSGIETVGMTTNGVLLAEYAKALKEAGLDSVNVSLDTLDETEFQRLT 130

Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
           G  EL  V   +N + E  I         Q +D   + + TN  
Sbjct: 131 GRDELNAVLAGINAAKEAQIPVKINTVHYQHLDWKSILDYTNRV 174


>gi|312134287|ref|YP_004001625.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Caldicellulosiruptor owensensis OL]
 gi|311774338|gb|ADQ03825.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Caldicellulosiruptor owensensis OL]
          Length = 231

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 28/152 (18%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           F GCN             C FC   +        G +  D +     E     +      
Sbjct: 23  FGGCNF-----------SCPFC---YNSQLINFKGSFMDDSI---FFEYLDKRKGIVDAV 65

Query: 89  VLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGC 139
            +TGGEP L        I+ +  R   + ++TNG+             +D++ +  KA  
Sbjct: 66  CITGGEPTLNEEYLTEFIKKIKNRSLVVKLDTNGSRPEVLQRLLDADLLDYVAMDVKAPL 125

Query: 140 D--LKIKGGQELKLVFPQVNVSPENYIGFDFE 169
           +   +I G  ++  +   + +   + I ++F 
Sbjct: 126 EKYPQITGFSDVDKIRRSIEILKNSNIDYEFR 157


>gi|163802103|ref|ZP_02195999.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. AND4]
 gi|159174244|gb|EDP59052.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. AND4]
          Length = 246

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT         G    V+++    +      
Sbjct: 25  VF--LQGC-----------LMRCKYCHNRDT----WDTHDGKEVTVEEIIAEAKTYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
              G     +GGE +LQ +      +A    G    ++TNG
Sbjct: 68  NASGGGITCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNG 108


>gi|124006585|ref|ZP_01691417.1| MoaA/nifB/pqqE family protein [Microscilla marina ATCC 23134]
 gi|123987740|gb|EAY27431.1| MoaA/nifB/pqqE family protein [Microscilla marina ATCC 23134]
          Length = 326

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 18/110 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN +      R +A+C FCD   +  + +         L +             +    T
Sbjct: 10  CNYYVTY---RCNARCGFCD---IWERPSPY-----VTLENAQRNFEGLKRLGVKIIDFT 58

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQG------IDWICVS 134
           GGEPLL   +P L++     GF   V TNG + P Q       ID + +S
Sbjct: 59  GGEPLLHRQLPELLEMAQNLGFITTVTTNGLLYPKQAEKLQGKIDMLHLS 108


>gi|15611772|ref|NP_223423.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           J99]
 gi|7674140|sp|Q9ZL75|MOAA_HELPJ RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|4155260|gb|AAD06280.1| MOLYBDOPTERIN COFACTOR BIOSYNTHETIC PROTEIN [Helicobacter pylori
           J99]
          Length = 321

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 64/173 (36%), Gaps = 29/173 (16%)

Query: 46  QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102
           +C++C   T              +D + + ++     G K+ R   +TGGEPLL+     
Sbjct: 24  RCQYCMPTTPLDFFDDE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDE 78

Query: 103 LIQALNKRGFEIA--VETNG-TIE------PPQGIDWICV---SPKAGCDLKIKGGQELK 150
            I  L+    E+A  + TNG +++         G+  + V   S K+   LKI     LK
Sbjct: 79  FIAKLHAYNKEVALVLSTNGFSLKKMAKGLKDAGLSRVNVSLDSLKSDRVLKISQKDALK 138

Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQ 203
                +  S +  +           M G   +E   L + Y         S+Q
Sbjct: 139 NTLEGIEESLKVGLKLKLNTVV---MKGVNDDEILEL-LEYAKNR-----SIQ 182


>gi|239906066|ref|YP_002952805.1| putative pyruvate formate-lyase activating enzyme [Desulfovibrio
           magneticus RS-1]
 gi|239795930|dbj|BAH74919.1| putative pyruvate formate-lyase activating enzyme [Desulfovibrio
           magneticus RS-1]
          Length = 320

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 6/94 (6%)

Query: 37  GREQDRLSAQCRFC-D---TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           G E      +C  C D   + + G     G      ++ + ++       + G     +G
Sbjct: 93  GGEIGIDRVRCDLCGDCVTSCYAGSMTIVGRYLTAGEVMEEVDRDRKFYAESGGGVTFSG 152

Query: 93  GEPLLQVDVPL--IQALNKRGFEIAVETNGTIEP 124
           GEP  Q D  L  ++A   RG   AVET G    
Sbjct: 153 GEPTSQPDFLLSCLRAAKARGLHTAVETCGHAPW 186


>gi|323486377|ref|ZP_08091702.1| pyruvate formate-lyase 1-activating enzyme [Clostridium symbiosum
           WAL-14163]
 gi|323694999|ref|ZP_08109146.1| pyruvate formate-lyase activating enzyme [Clostridium symbiosum
           WAL-14673]
 gi|323400359|gb|EGA92732.1| pyruvate formate-lyase 1-activating enzyme [Clostridium symbiosum
           WAL-14163]
 gi|323500943|gb|EGB16858.1| pyruvate formate-lyase activating enzyme [Clostridium symbiosum
           WAL-14673]
          Length = 241

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 23/104 (22%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R  +F    GC L           +CR+C   DT         G     + L   ++   
Sbjct: 10  RSVIF--LQGCRL-----------RCRYCHNPDT----WDPNGGSLCTAEVLMQKLKRFK 52

Query: 79  ITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
                +G     +GGEPLLQ    + L++     G    ++T G
Sbjct: 53  PYYGSKGG-VTFSGGEPLLQSGFLLELLKLCRSEGISACLDTAG 95


>gi|313114814|ref|ZP_07800314.1| pyruvate formate-lyase 1-activating enzyme [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622869|gb|EFQ06324.1| pyruvate formate-lyase 1-activating enzyme [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 251

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 22/127 (17%)

Query: 8   EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
           E F ++ G G        VF    GC           + +C++C           G  + 
Sbjct: 14  ESFGSVDGPGVRFV----VF--LQGC-----------ALRCKYCHNPETW-AAEGGEEWT 55

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
            ++L   +        K+G    ++GGEPL Q+       +    +G   A++T G    
Sbjct: 56  AEKLFQRVYRYRNYWGKKGG-ITVSGGEPLRQMEFLTAFFELARSKGVHTALDTAGQPFR 114

Query: 125 PQGIDWI 131
           P   D++
Sbjct: 115 PDDPDYL 121


>gi|170702587|ref|ZP_02893460.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
           IOP40-10]
 gi|170132498|gb|EDT00953.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
           IOP40-10]
          Length = 372

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 25/142 (17%)

Query: 41  DRLSAQCRFC---DT---DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           D+ + +C +C   D+   D+  +  +   R +  QL  +       G ++ R   LTGGE
Sbjct: 48  DQCNFRCGYCMPRDSFGPDYAFMPSS--ERLSFAQLEKIARAFISLGVEKIR---LTGGE 102

Query: 95  PLLQVDV-PLIQALN------KRGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ ++  LI+ L        +  EIA+ TNG++           G+  + VS  A  D
Sbjct: 103 PLLRRNLGALIERLATLTTVDGKPVEIALTTNGSLLAAKARSLRDAGLSRVTVSLDAIDD 162

Query: 141 LKIKGGQELKLVFPQVNVSPEN 162
              +   +  +   +V    E 
Sbjct: 163 AVFRRMSDADVPVARVLAGIEA 184


>gi|317504869|ref|ZP_07962825.1| pyruvate formate-lyase activating enzyme [Prevotella salivae DSM
           15606]
 gi|315664053|gb|EFV03764.1| pyruvate formate-lyase activating enzyme [Prevotella salivae DSM
           15606]
          Length = 286

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 28/118 (23%)

Query: 8   EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F ++ G G  +     +F    GC +           +C FC   DT     +  K  
Sbjct: 52  ETFGSVDGPGIRYI----IF--LQGCPM-----------RCLFCHNPDT----WKQNKVK 90

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
               D+L D   E++ T   E     ++GGE LLQ+D  + L++  + R     ++T+
Sbjct: 91  PMTADELLDQ-AERYRTYWGEKGGITISGGEALLQIDFLIELLEKAHARQINTCLDTS 147


>gi|313896806|ref|ZP_07830353.1| pyruvate formate-lyase 1-activating enzyme [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312974253|gb|EFR39721.1| pyruvate formate-lyase 1-activating enzyme [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 252

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 43/125 (34%), Gaps = 25/125 (20%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
            E F ++ G G        VF    GC             +C++C       +   G   
Sbjct: 11  TESFGSVDGPGIRFI----VFV--QGC-----------RYRCQYCHNPETW-EAEGGYEA 52

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG--- 120
             +++            K      ++GGEPLLQ+D    L +    +G   A++T G   
Sbjct: 53  TPEEIFRQALRYRPY-WKNTGGITVSGGEPLLQLDFVTELFRLAKGKGVNTAIDTAGEPF 111

Query: 121 TIEPP 125
           T   P
Sbjct: 112 THAQP 116


>gi|206895195|ref|YP_002246932.1| molybdenum cofactor biosynthesis protein MoaA [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206737812|gb|ACI16890.1| molybdenum cofactor biosynthesis protein MoaA [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 312

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR +  C +C             R  V +  D++       E   +   LTG
Sbjct: 10  NYLRISVTDRCNFDCLYC-----SHPVEMLPRERVLRFEDIVVLVQAAKELGIKKVRLTG 64

Query: 93  GEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           GEPLL+ D+  L+  L++    +   TNG
Sbjct: 65  GEPLLRRDIDKLVAMLHELDVTVHTTTNG 93


>gi|209521105|ref|ZP_03269834.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. H160]
 gi|209498451|gb|EDZ98577.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. H160]
          Length = 410

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVL 90
            LW   E   R    C FC   +  +  T   R  + +Q  D++ E    G  +  +   
Sbjct: 22  PLWLLAELTYRCPLHCAFC---YNPLDYTDHNRELSTEQWLDVLREARALGAVQLGF--- 75

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           +GGEPL++ D+  L++  ++ GF   + T+G
Sbjct: 76  SGGEPLVRDDLEVLVEEAHRLGFYTNLITSG 106


>gi|294140395|ref|YP_003556373.1| pyruvate formate-lyase 1 activating enzyme [Shewanella violacea
           DSS12]
 gi|293326864|dbj|BAJ01595.1| pyruvate formate-lyase 1 activating enzyme [Shewanella violacea
           DSS12]
          Length = 246

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 41/122 (33%), Gaps = 33/122 (27%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F T+ G G          RF     GC             +C++C   DT        
Sbjct: 11  ESFGTVDGPG---------IRFIAFMQGC-----------LMRCQYCHNRDT----WDLH 46

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
            G    V +L + I       E  G     +GGE +LQ +    L     K G    ++T
Sbjct: 47  GGSEVEVKELMEQIISYRPFLEASGGGVTASGGEAILQAEFVSELFAECKKEGIHTCLDT 106

Query: 119 NG 120
           NG
Sbjct: 107 NG 108


>gi|222480270|ref|YP_002566507.1| molybdenum cofactor biosynthesis protein A [Halorubrum
           lacusprofundi ATCC 49239]
 gi|222453172|gb|ACM57437.1| molybdenum cofactor biosynthesis protein A [Halorubrum
           lacusprofundi ATCC 49239]
          Length = 334

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 18/107 (16%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR +  C +C      DT   G           D +   +E   +           TGGE
Sbjct: 22  DRCNFDCVYCHNEGLGDTR--GPMEPSDDEMTADDVVRFLE---VVEGYGVDSVKFTGGE 76

Query: 95  PLLQVDVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS 134
           P+L+ D+  I        E+++ TNGT  P         G+D + VS
Sbjct: 77  PMLRQDLEEIVERTPDSMEVSLTTNGTFLPGRAEDLKAAGLDRVNVS 123


>gi|307243856|ref|ZP_07525984.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678]
 gi|306492767|gb|EFM64792.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678]
          Length = 345

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 27/140 (19%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F     CNL           +C++C  D    +         D++   I E+      
Sbjct: 4   TIFV-TQKCNL-----------RCKYCYED-NLDRRDDMSIETADKVIKFILERLTEKNI 50

Query: 84  EGRYCVL-TGGEPLL------QVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWIC---- 132
           +    ++  GGEPLL       +   L   ++ R     + TNGT+   + ID++C    
Sbjct: 51  DRPLVIIFHGGEPLLNFDLVKYIREELENKVSDRKIIYHMTTNGTLINNENIDFLCKKID 110

Query: 133 -VSPKAGCDLKIKGGQELKL 151
            +S     D   K   E ++
Sbjct: 111 FLS--VSMDGVKKINDENRI 128


>gi|284162371|ref|YP_003400994.1| radical SAM protein [Archaeoglobus profundus DSM 5631]
 gi|284012368|gb|ADB58321.1| Radical SAM domain protein [Archaeoglobus profundus DSM 5631]
          Length = 462

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C+ C   +           N  +    +E   I  +        +
Sbjct: 121 CNL-----------KCKHC---YSTAGKPWKDELNTQEALRAME---ILADAGVTAIAFS 163

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPL++ D   L +A+   G  +AV TNGT+
Sbjct: 164 GGEPLIRKDFFELAKAVRDHGMFVAVATNGTL 195


>gi|163943138|ref|YP_001648022.1| radical SAM domain-containing protein [Bacillus weihenstephanensis
           KBAB4]
 gi|229170160|ref|ZP_04297847.1| Radical SAM domain protein [Bacillus cereus AH621]
 gi|163865335|gb|ABY46394.1| Radical SAM domain protein [Bacillus weihenstephanensis KBAB4]
 gi|228613305|gb|EEK70443.1| Radical SAM domain protein [Bacillus cereus AH621]
          Length = 292

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C FC          +  ++ +V+  A  +++     +    +   
Sbjct: 15  CNL-----------ACSFC------PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK- 56

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 57  --GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 87


>gi|328957563|ref|YP_004374949.1| formate C-acetyltransferase activating enzyme [Carnobacterium sp.
           17-4]
 gi|328673887|gb|AEB29933.1| formate C-acetyltransferase activating enzyme [Carnobacterium sp.
           17-4]
          Length = 253

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 47/132 (35%), Gaps = 39/132 (29%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +C FC   DT       
Sbjct: 12  TESFGSVDGPG---------IRFVTFMQGC-----------RMRCEFCHNPDT----WNM 47

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAV 116
             G  Y  DQL +          K+G    ++GGEPLL +D  LI+      + G    +
Sbjct: 48  GGGTPYTADQLLEEALSYKDYWGKKGG-ITVSGGEPLLHIDF-LIEYFRKAKEEGIHTTL 105

Query: 117 ETNG---TIEPP 125
           +T G   T E P
Sbjct: 106 DTCGQPFTYEEP 117


>gi|307107693|gb|EFN55935.1| hypothetical protein CHLNCDRAFT_57698 [Chlorella variabilis]
          Length = 332

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 26/115 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC L           +C FC   DT        +G   +   LA  +E      
Sbjct: 101 VFV--QGCGL-----------RCVFCSNPDT----WHMARGKLTSSKDLAKKLERVKPYL 143

Query: 82  EKEGRY--CVLTGGEPLLQVDVP---LIQALNKRGFEIAVETNGTIEPPQGIDWI 131
            +        ++GGEPLLQ +     L++A + RG    ++T G        D +
Sbjct: 144 SQGDHKGGITISGGEPLLQPEFTASVLMEA-HTRGLTTCIDTTGQGMKHSHWDKV 197


>gi|325660668|ref|ZP_08149298.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325473029|gb|EGC76237.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 176

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 19/88 (21%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            GC              C+ C       +   G  +  D L  +IEE  +          
Sbjct: 31  QGCP-----------HHCQGCHNPETW-EFDGGTWWTTDDLVKVIEENPLAKG-----VT 73

Query: 90  LTGGEPLLQVD--VPLIQALNKRGFEIA 115
            +GGEP  Q +    L   L  RG+E+A
Sbjct: 74  FSGGEPFSQAEAFAELAGKLKNRGYEVA 101


>gi|167039792|ref|YP_001662777.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacter sp. X514]
 gi|300914963|ref|ZP_07132278.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacter sp. X561]
 gi|307724883|ref|YP_003904634.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacter sp. X513]
 gi|166854032|gb|ABY92441.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacter sp. X514]
 gi|300888687|gb|EFK83834.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacter sp. X561]
 gi|307581944|gb|ADN55343.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacter sp. X513]
          Length = 228

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 62/158 (39%), Gaps = 30/158 (18%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
             VF   SGCN            +C +C   ++       G  +     + ++ +    E
Sbjct: 19  ATVFI--SGCNF-----------KCPYCHNSYLIPIRE--GIRSEKDFFNYLKRRANLIE 63

Query: 83  KEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS 134
                  +TGGEP L   +   I+ +    F + ++TNG+           + +D+I + 
Sbjct: 64  G----VCITGGEPALWRGLKDFIKNIKDLHFSVKLDTNGSRPQVLEDLIKEELVDYIAMD 119

Query: 135 PKAGCD---LKIKGGQELKLVFPQVNVSPENYIGFDFE 169
            KA  +   + +K  +++  +   V +   ++I ++F 
Sbjct: 120 IKAPIEKYSIFLKNKKDIDNIQKSVEIIKNSHIDYEFR 157


>gi|302838985|ref|XP_002951050.1| pyruvate formate-lyase activating enzyme [Volvox carteri f.
           nagariensis]
 gi|300263745|gb|EFJ47944.1| pyruvate formate-lyase activating enzyme [Volvox carteri f.
           nagariensis]
          Length = 341

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 66/187 (35%), Gaps = 36/187 (19%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC           + +C FC   DT         G R +  +LA+ I++     
Sbjct: 120 VFV--QGC-----------AMRCLFCSNPDT----WNMKGGTRTSSKELAEQIKKVRNYL 162

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET--NGTIE-----PPQGIDWIC 132
           +  G    ++GGE +LQ      + Q ++  G    ++T   GT            D + 
Sbjct: 163 KPRGG-VTISGGEAMLQPKFVAAVFQEVHALGLNTTIDTTGQGTKHGNWDVVLPHTDLVL 221

Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP---FLEENTNLAI 189
              K    LK +    LK    +  +   + +      F L+ +  P      ++ +  I
Sbjct: 222 FCIKHIDPLKYESITGLKQ---KGALRFADELADRKIPFYLRYVYIPGYTDGPKDIDKLI 278

Query: 190 SYCFQNP 196
            +C + P
Sbjct: 279 EWCKKQP 285


>gi|291459649|ref|ZP_06599039.1| putative heme biosynthesis protein [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291417681|gb|EFE91400.1| putative heme biosynthesis protein [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 432

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104
           +C  C   FV     +     V+++  ++E             V++GGEPL+    + L+
Sbjct: 120 RCPHC---FVSAGIVEKQELKVEEILAVVERIKEINGLTD--IVVSGGEPLIHSGTIQLL 174

Query: 105 QALNKRGFEIAVETNGTI 122
           + L   G  + + TNGT+
Sbjct: 175 KGLK--GHNVTLFTNGTL 190


>gi|166710944|ref|ZP_02242151.1| molybdenum cofactor biosynthesis protein A [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 343

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
           +C +C   D            R + DQL  L+      G  + R   LTGGEPLL+ D+P
Sbjct: 36  RCGYCMPADRVPDDYGFDSRQRLSFDQLETLVRAFVSVGVAKVR---LTGGEPLLRRDLP 92

Query: 103 -LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVSPKAGCDLKIKGGQELKLV 152
            LI  L    G E +A+ TNGT+   Q +         I VS  A      +     +  
Sbjct: 93  SLIARLTAIEGIEDLALTTNGTLLARQAVALRQAGLRRITVSMDALEPALFRRMNGDRGE 152

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL 187
             QV           F+R  +  +    + E+  L
Sbjct: 153 IAQVLAGIAAAEQAGFQRLKINCVVQRGVNEDQVL 187


>gi|295107926|emb|CBL21879.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Ruminococcus obeum A2-162]
          Length = 232

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 88  CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
             ++GGEP L  D+   IQ ++  G+ + ++TNGT  
Sbjct: 69  VCISGGEPTLAPDLEDFIQKIHNLGYPVKLDTNGTHP 105


>gi|206975908|ref|ZP_03236819.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217962951|ref|YP_002341529.1| hypothetical protein BCAH187_A5642 [Bacillus cereus AH187]
 gi|222098935|ref|YP_002532993.1| hypothetical protein BCQ_5304 [Bacillus cereus Q1]
 gi|206746002|gb|EDZ57398.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217067946|gb|ACJ82196.1| conserved hypothetical protein [Bacillus cereus AH187]
 gi|221242994|gb|ACM15704.1| conserved hypothetical protein [Bacillus cereus Q1]
          Length = 292

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C FC          +  ++ +V+  A  +++     +    +   
Sbjct: 15  CNL-----------ACSFC------PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK- 56

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 57  --GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 87


>gi|116074219|ref|ZP_01471481.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp.
           RS9916]
 gi|116069524|gb|EAU75276.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp.
           RS9916]
          Length = 350

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 38/126 (30%)

Query: 29  FSG-CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
            +G CNL            C +C            G  +++    ++++    G    R 
Sbjct: 22  LTGRCNL-----------ACPYC----CPDADEPAGLLSLEAQLAVVQQACALGAHTLR- 65

Query: 88  CVLTGGEPLLQVDV-PLIQALNK---------RGF-EIAVETNGTIEPPQ--------GI 128
             LTGGEPLL   + PL++A+            G  ++ + TNG +   +        G+
Sbjct: 66  --LTGGEPLLSDRLWPLLEAVAAARSRPDSPFHGLQQVTLTTNGALLTSERARRLRALGV 123

Query: 129 DWICVS 134
           D + VS
Sbjct: 124 DRLTVS 129


>gi|17221315|emb|CAA05050.2| benzylsuccinate synthase activating enzyme [Thauera aromatica]
          Length = 331

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 51/173 (29%), Gaps = 60/173 (34%)

Query: 1   MKLYSIKEI--FLTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------Q 46
           MK+  I EI  F +LQ G G       +F    GC L      +  +            +
Sbjct: 1   MKIPLITEIQRF-SLQDGPGIRT---TIF--LKGCPLRCPWCHNPETQDARQEFYFYPDR 54

Query: 47  CRFC---------DTDFVGIQGTK-----------------------------GGRYNVD 68
           C  C         +T  +                                   G   +VD
Sbjct: 55  CVGCGRCVAVCPAETSRLVRNSDGRTIVQIDRTNCQRCMRCVAACLTEARAIVGQHMSVD 114

Query: 69  QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119
           ++              G    ++GG+PL   D    L   L+ RG  +A+ET+
Sbjct: 115 EILREALSDSAFYRNSGGGVTISGGDPLYFPDFTRQLASELHARGVHVAIETS 167


>gi|147920417|ref|YP_685808.1| hypothetical protein RCIX1164 [uncultured methanogenic archaeon
           RC-I]
 gi|110621204|emb|CAJ36482.1| hypothetical protein RCIX1164 [uncultured methanogenic archaeon
           RC-I]
          Length = 340

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
           +C +C   +     T  G     + A +  +     E   R   ++GGEPLL+ D+P I 
Sbjct: 24  RCLYCYNVWKCHGRTAPGDLPAPEWAKITGKLQR--ESSVRLITVSGGEPLLREDLPEIL 81

Query: 106 A-LNKRGFEIAVETNGTI 122
             +  RG +I + TNGT+
Sbjct: 82  GDIKTRGIDINLITNGTL 99


>gi|52145264|ref|YP_086721.1| molybdenum cofactor biosynthesis enzyme [Bacillus cereus E33L]
 gi|51978733|gb|AAU20283.1| conserved hypothetical protein; possible molybdenum cofactor
           biosynthesis enzyme [Bacillus cereus E33L]
          Length = 292

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C FC          +  ++ +V+  A  +++     +    +   
Sbjct: 15  CNL-----------ACSFC------PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK- 56

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 57  --GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 87


>gi|309777240|ref|ZP_07672203.1| putative pyruvate formate-lyase activating enzyme
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915110|gb|EFP60887.1| putative pyruvate formate-lyase activating enzyme
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 298

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 38  REQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
              +     CR C+ T        +G   ++D + + I +     +  G     +GGEP 
Sbjct: 76  TYHEERCQGCRQCERTCLQDAIQFQGIDMSLDTIMEEIRKDKDYYDNSGGGVTFSGGEPF 135

Query: 97  LQ--VDVPLIQALNKRGFEIAVETNG 120
           +Q      L+QA  + G+  AVET G
Sbjct: 136 VQHTALWELLQACKREGYHTAVETTG 161


>gi|74318188|ref|YP_315928.1| putative pyruvate radical-activating enzyme [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057683|gb|AAZ98123.1| putative pyruvate radical-activating enzyme [Thiobacillus
           denitrificans ATCC 25259]
          Length = 229

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 45/138 (32%), Gaps = 38/138 (27%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIE 75
           G +A  VFC   GC             +C +C   D     I          D +   + 
Sbjct: 17  GMLAAVVFC--QGCP-----------WRCGYCHNPD----LIPPRGEREIPWDDVLSFLR 59

Query: 76  EQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-----PPQGID 129
            +    +      V +GGEP LQ   V  ++ +   GF I + T G            +D
Sbjct: 60  RRQGLLDA----VVFSGGEPTLQAGLVDAVREVRALGFRIGLHTGGMYPKKLATVLPFVD 115

Query: 130 WICVSPKAGCDLKIKGGQ 147
           W+      G D+K     
Sbjct: 116 WV------GMDVKAPFAD 127


>gi|30023483|ref|NP_835114.1| molybdenum cofactor biosynthesis protein [Bacillus cereus ATCC
           14579]
 gi|229051126|ref|ZP_04194670.1| Radical SAM domain protein [Bacillus cereus AH676]
 gi|229130703|ref|ZP_04259656.1| Radical SAM domain protein [Bacillus cereus BDRD-Cer4]
 gi|229148338|ref|ZP_04276621.1| Radical SAM domain protein [Bacillus cereus BDRD-ST24]
 gi|296505878|ref|YP_003667578.1| molybdenum cofactor biosynthesis protein [Bacillus thuringiensis
           BMB171]
 gi|29899044|gb|AAP12315.1| Molybdenum cofactor biosynthesis enzyme and related Fe-S
           oxidoreductases [Bacillus cereus ATCC 14579]
 gi|228635132|gb|EEK91679.1| Radical SAM domain protein [Bacillus cereus BDRD-ST24]
 gi|228652720|gb|EEL08605.1| Radical SAM domain protein [Bacillus cereus BDRD-Cer4]
 gi|228722189|gb|EEL73590.1| Radical SAM domain protein [Bacillus cereus AH676]
 gi|296326930|gb|ADH09858.1| molybdenum cofactor biosynthesis protein [Bacillus thuringiensis
           BMB171]
          Length = 292

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C FC          +  ++ +V+  A  +++     +    +   
Sbjct: 15  CNL-----------ACSFC------PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK- 56

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 57  --GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 87


>gi|20089462|ref|NP_615537.1| heme d1 biosynthesis protein NirJ [Methanosarcina acetivorans C2A]
 gi|19914367|gb|AAM04017.1| heme d1 biosynthesis protein NirJ [Methanosarcina acetivorans C2A]
          Length = 349

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 17/101 (16%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            +GCNL            CR              G    ++    I+E    G+      
Sbjct: 16  TAGCNLNC--------VHCRG-----ASTSSVPEGELTTEEAKHFIDEVVELGK---PIL 59

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGI 128
           +L+GGEPL + DV  + +     G  + + TNGT+  P+ +
Sbjct: 60  ILSGGEPLTRSDVFEIARYATDAGLRVVLATNGTLLTPELV 100


>gi|56476469|ref|YP_158058.1| benzylsuccinate synthase activating enzyme [Aromatoleum aromaticum
           EbN1]
 gi|56312512|emb|CAI07157.1| Benzylsuccinate synthase activating enzyme [Aromatoleum aromaticum
           EbN1]
          Length = 331

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 51/173 (29%), Gaps = 60/173 (34%)

Query: 1   MKLYSIKEI--FLTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS-----------AQ 46
           M++  + EI  F +LQ G G       +F    GC L      +  +           A+
Sbjct: 1   MRIPLVTEIQRF-SLQDGPGIRT---TIF--LKGCPLHCPWCHNPETQDARQEFYYYPAR 54

Query: 47  CRFCD---------TDFVGIQGTKGGRYNVD--------------------------QLA 71
           C  C          T  +        R  +D                           + 
Sbjct: 55  CVGCGRCVAVCPAGTSRLVHHSDGRTRIELDRTNCQRCMRCVAACLTEARSIVGQRMSVE 114

Query: 72  DLIEEQWITGEKEGRY---CVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119
           D++ E                ++GGEPL   +    L   L+  G  +A+ET+
Sbjct: 115 DILREALSDSAFYRNSGGGVTISGGEPLYFPEFTRQLAGELHAAGVHVAIETS 167


>gi|75762369|ref|ZP_00742244.1| Molybdenum cofactor biosynthesis enzyme and related Fe-S
           oxidoreductases [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|206970162|ref|ZP_03231115.1| conserved hypothetical protein [Bacillus cereus AH1134]
 gi|218231649|ref|YP_002370232.1| hypothetical protein BCB4264_A5580 [Bacillus cereus B4264]
 gi|228903941|ref|ZP_04068051.1| Radical SAM domain protein [Bacillus thuringiensis IBL 4222]
 gi|228942606|ref|ZP_04105138.1| Radical SAM domain protein [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228955708|ref|ZP_04117703.1| Radical SAM domain protein [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228961721|ref|ZP_04123325.1| Radical SAM domain protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228968591|ref|ZP_04129576.1| Radical SAM domain protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228975536|ref|ZP_04136088.1| Radical SAM domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228982172|ref|ZP_04142461.1| Radical SAM domain protein [Bacillus thuringiensis Bt407]
 gi|229072922|ref|ZP_04206118.1| Radical SAM domain protein [Bacillus cereus F65185]
 gi|229083004|ref|ZP_04215419.1| Radical SAM domain protein [Bacillus cereus Rock4-2]
 gi|229153615|ref|ZP_04281792.1| Radical SAM domain protein [Bacillus cereus m1550]
 gi|74490145|gb|EAO53486.1| Molybdenum cofactor biosynthesis enzyme and related Fe-S
           oxidoreductases [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|206734739|gb|EDZ51908.1| conserved hypothetical protein [Bacillus cereus AH1134]
 gi|218159606|gb|ACK59598.1| conserved hypothetical protein [Bacillus cereus B4264]
 gi|228629844|gb|EEK86496.1| Radical SAM domain protein [Bacillus cereus m1550]
 gi|228700305|gb|EEL52876.1| Radical SAM domain protein [Bacillus cereus Rock4-2]
 gi|228710168|gb|EEL62146.1| Radical SAM domain protein [Bacillus cereus F65185]
 gi|228777524|gb|EEM25802.1| Radical SAM domain protein [Bacillus thuringiensis Bt407]
 gi|228784146|gb|EEM32173.1| Radical SAM domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228791083|gb|EEM38700.1| Radical SAM domain protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228797956|gb|EEM44965.1| Radical SAM domain protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228803936|gb|EEM50560.1| Radical SAM domain protein [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228817032|gb|EEM63125.1| Radical SAM domain protein [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228855699|gb|EEN00249.1| Radical SAM domain protein [Bacillus thuringiensis IBL 4222]
 gi|326943255|gb|AEA19151.1| molybdenum cofactor biosynthesis protein [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 292

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C FC          +  ++ +V+  A  +++     +    +   
Sbjct: 15  CNL-----------ACSFC------PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK- 56

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 57  --GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 87


>gi|30265476|ref|NP_847853.1| hypothetical protein BA_5707 [Bacillus anthracis str. Ames]
 gi|42784642|ref|NP_981889.1| hypothetical protein BCE_5597 [Bacillus cereus ATCC 10987]
 gi|47531044|ref|YP_022393.1| hypothetical protein GBAA_5707 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47568578|ref|ZP_00239277.1| molybdenum cofactor biosynthesis enzyme and related Fe-S
           oxidoreductases [Bacillus cereus G9241]
 gi|49188295|ref|YP_031548.1| hypothetical protein BAS5311 [Bacillus anthracis str. Sterne]
 gi|49480465|ref|YP_039448.1| molybdenum cofactor biosynthesis enzyme [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|118480486|ref|YP_897637.1| molybdenum cofactor biosynthesis protein [Bacillus thuringiensis
           str. Al Hakam]
 gi|165872538|ref|ZP_02217171.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167636260|ref|ZP_02394563.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|167641439|ref|ZP_02399689.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170689210|ref|ZP_02880407.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|170708666|ref|ZP_02899105.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|177651819|ref|ZP_02934402.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190568908|ref|ZP_03021810.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|196041932|ref|ZP_03109219.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
 gi|196045483|ref|ZP_03112714.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|225867439|ref|YP_002752817.1| hypothetical protein BCA_5609 [Bacillus cereus 03BB102]
 gi|227818227|ref|YP_002818236.1| hypothetical protein BAMEG_5755 [Bacillus anthracis str. CDC 684]
 gi|229112870|ref|ZP_04242401.1| Radical SAM domain protein [Bacillus cereus Rock1-15]
 gi|229603794|ref|YP_002869667.1| hypothetical protein BAA_5738 [Bacillus anthracis str. A0248]
 gi|254687101|ref|ZP_05150959.1| hypothetical protein BantC_25123 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724116|ref|ZP_05185901.1| hypothetical protein BantA1_16873 [Bacillus anthracis str. A1055]
 gi|254733622|ref|ZP_05191339.1| hypothetical protein BantWNA_00447 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742158|ref|ZP_05199845.1| hypothetical protein BantKB_14293 [Bacillus anthracis str. Kruger
           B]
 gi|254755932|ref|ZP_05207964.1| hypothetical protein BantV_25964 [Bacillus anthracis str. Vollum]
 gi|254761644|ref|ZP_05213664.1| hypothetical protein BantA9_25303 [Bacillus anthracis str.
           Australia 94]
 gi|300118842|ref|ZP_07056562.1| hypothetical protein BCSJ1_18040 [Bacillus cereus SJ1]
 gi|301056922|ref|YP_003795133.1| hypothetical protein BACI_c54500 [Bacillus anthracis CI]
 gi|30260154|gb|AAP29339.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gi|42740574|gb|AAS44497.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gi|47506192|gb|AAT34868.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47554820|gb|EAL13172.1| molybdenum cofactor biosynthesis enzyme and related Fe-S
           oxidoreductases [Bacillus cereus G9241]
 gi|49182222|gb|AAT57598.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|49332021|gb|AAT62667.1| conserved hypothetical protein, possible molybdenum cofactor
           biosynthesis enzyme [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118419711|gb|ABK88130.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|164711761|gb|EDR17305.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167510614|gb|EDR86010.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|167528375|gb|EDR91146.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170126448|gb|EDS95336.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|170666853|gb|EDT17619.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|172082523|gb|EDT67587.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190559975|gb|EDV13958.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|196023690|gb|EDX62366.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|196027187|gb|EDX65807.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
 gi|225790086|gb|ACO30303.1| conserved hypothetical protein [Bacillus cereus 03BB102]
 gi|227003322|gb|ACP13065.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684]
 gi|228670549|gb|EEL25862.1| Radical SAM domain protein [Bacillus cereus Rock1-15]
 gi|229268202|gb|ACQ49839.1| conserved hypothetical protein [Bacillus anthracis str. A0248]
 gi|298723810|gb|EFI64532.1| hypothetical protein BCSJ1_18040 [Bacillus cereus SJ1]
 gi|300379091|gb|ADK07995.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
           str. CI]
 gi|324329409|gb|ADY24669.1| hypothetical protein YBT020_27235 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 292

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C FC          +  ++ +V+  A  +++     +    +   
Sbjct: 15  CNL-----------ACSFC------PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK- 56

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 57  --GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 87


>gi|262194648|ref|YP_003265857.1| radical SAM protein [Haliangium ochraceum DSM 14365]
 gi|262077995|gb|ACY13964.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365]
          Length = 370

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 5/80 (6%)

Query: 28  RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
           R +G          R   +C  C T      G +    ++++    I +         RY
Sbjct: 34  RLAG---LYVAITRRCPLRCEHCSTRSSPQVGERELGPHLERFFASIGKAGTAAHPPPRY 90

Query: 88  CVLTGGEPLLQVDVPLIQAL 107
              TGGEPLL     L+  L
Sbjct: 91  VYFTGGEPLLHP--ELVTKL 108


>gi|160943776|ref|ZP_02091007.1| hypothetical protein FAEPRAM212_01274 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444950|gb|EDP21953.1| hypothetical protein FAEPRAM212_01274 [Faecalibacterium prausnitzii
           M21/2]
          Length = 250

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 23/116 (19%)

Query: 8   EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
           E F ++ G G        VF    GC           + +C++C       +G  G  + 
Sbjct: 14  ESFGSVDGPGVRFV----VF--LQGC-----------ALRCKYCHNPETWAEG--GEAWT 54

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
            + L   +        K+G    ++GGEPL Q+D           +G   A++T G
Sbjct: 55  AEALFQRVYRYRNYWGKKGG-ITVSGGEPLRQLDFLTEFFTLARAKGVHTALDTAG 109


>gi|91772361|ref|YP_565053.1| radical SAM family Fe-S protein [Methanococcoides burtonii DSM
           6242]
 gi|91711376|gb|ABE51303.1| Radical SAM family protein [Methanococcoides burtonii DSM 6242]
          Length = 206

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 61/161 (37%), Gaps = 28/161 (17%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLL 97
           +R SA C FC  D    GI G+         L +++++      +  R  V TG GEP +
Sbjct: 30  NRCSANCVFCIRDIS-DGIYGSNLRLTKEPSLDEILDKLGSLDLEIYREVVFTGFGEPTI 88

Query: 98  QVDVPL--IQALNKRGFEIAVETNG-TIEPPQGIDWICVSPKAGCDLKIKGGQELKLV-F 153
           ++D+ L   + L + G ++ ++TNG         D I                ELK    
Sbjct: 89  RLDIVLEVTRWLKEHGMKVRIDTNGHAQLLHPERDVIS---------------ELKDAGL 133

Query: 154 PQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
            +V+VS        ++         P LE      + +  +
Sbjct: 134 DEVSVSLNAESKERYDELC-----QPDLENAYEAMLEFTKE 169


>gi|126174881|ref|YP_001051030.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica
           OS155]
 gi|304411937|ref|ZP_07393548.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS183]
 gi|307303295|ref|ZP_07583050.1| pyruvate formate-lyase activating enzyme [Shewanella baltica BA175]
 gi|125998086|gb|ABN62161.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS155]
 gi|304349797|gb|EFM14204.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS183]
 gi|306913655|gb|EFN44077.1| pyruvate formate-lyase activating enzyme [Shewanella baltica BA175]
          Length = 246

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 57/195 (29%), Gaps = 44/195 (22%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F T+ G G          RF     GC             +C++C   DT       
Sbjct: 10  VESFGTVDGPG---------IRFITFMQGC-----------LMRCQYCHNRDT----WDL 45

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117
             G    VD+L   I       +        +GGE +LQ +    L  A  + G    ++
Sbjct: 46  DGGKEVLVDELMSQIISYRPFLDASNGGVTASGGEAILQAEFVAELFTACQQEGIHTCLD 105

Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177
           TNG +     +           D  +     + L    ++      +       +LQ   
Sbjct: 106 TNGFVRKYTPV----------IDELLDHTDLVLLDIKHMDDEKHIELTKVSNHRTLQFA- 154

Query: 178 GPFLEENTNLAISYC 192
               E N    I Y 
Sbjct: 155 QYLAERNQATWIRYV 169


>gi|319790216|ref|YP_004151849.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
 gi|317114718|gb|ADU97208.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
          Length = 376

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR           ++ G ++ +    L+++     +      VLT
Sbjct: 20  CNLQC--------IHCR-----SASTMESEQGDFSTEDGKKLLDD---IAKLSKPTVVLT 63

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D+  L +   K GF + + TNGT+
Sbjct: 64  GGEPLLREDIWELAEYGTKLGFRMCIATNGTL 95


>gi|226950642|ref|YP_002805733.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A2
           str. Kyoto]
 gi|226844521|gb|ACO87187.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A2
           str. Kyoto]
          Length = 232

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 23/101 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G   + D++   +       
Sbjct: 22  VF--FQGC-----------QLRCVYCHNPDT----WDFNAGIEISSDEVLKKVLRYKPY- 63

Query: 82  EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
            K+      +GGEPL+Q    + +++    +    A++T+G
Sbjct: 64  FKQVGGITCSGGEPLMQPEFLLEILKKCENQSIHTALDTSG 104


>gi|225571285|ref|ZP_03780281.1| hypothetical protein CLOHYLEM_07383 [Clostridium hylemonae DSM
           15053]
 gi|225159761|gb|EEG72380.1| hypothetical protein CLOHYLEM_07383 [Clostridium hylemonae DSM
           15053]
          Length = 259

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 23/121 (19%)

Query: 15  GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG---TKGGRYNVDQLA 71
           GEG       V+    GC L           +C++C T    +       G     + + 
Sbjct: 19  GEGLRT---VVYV--KGCPL-----------RCQWCSTPESQLVECMMDYGYDATPESIL 62

Query: 72  DLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN--GTIEPPQG 127
             I +  +     G    ++GGE +LQ D    ++    + G   A+E++  G+ E  + 
Sbjct: 63  KEIRKDEVFFFHSGGGVTISGGEVMLQSDFVRDILAGCKEDGLNTAIESSLFGSYEALEK 122

Query: 128 I 128
           +
Sbjct: 123 L 123


>gi|218900586|ref|YP_002448997.1| hypothetical protein BCG9842_B5367 [Bacillus cereus G9842]
 gi|218543276|gb|ACK95670.1| conserved hypothetical protein [Bacillus cereus G9842]
          Length = 279

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C FC          +  ++ +V+  A  +++     +    +   
Sbjct: 2   CNL-----------ACSFC------PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK- 43

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 44  --GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 74


>gi|218906638|ref|YP_002454472.1| hypothetical protein BCAH820_5552 [Bacillus cereus AH820]
 gi|218537395|gb|ACK89793.1| conserved hypothetical protein [Bacillus cereus AH820]
          Length = 292

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C FC          +  ++ +V+  A  +++     +    +   
Sbjct: 15  CNL-----------ACSFC------PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK- 56

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 57  --GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 87


>gi|325264391|ref|ZP_08131122.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
           D5]
 gi|324030462|gb|EGB91746.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
           D5]
          Length = 304

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 24/128 (18%)

Query: 50  CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQAL 107
           C T  + +   KG      +      +     ++ G    L+GGEPLLQ D  V L++  
Sbjct: 94  CPTKALTV---KGNWMTPKEAFTEAVKDEEFYKRSGGGVTLSGGEPLLQADFAVALLKLC 150

Query: 108 NKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ----ELKLVFPQVNVSPENY 163
            + G   AVET G           CV PK      +   +    +LK V  Q++   +N+
Sbjct: 151 REHGIHTAVETTG-----------CV-PKENLKKVLPYTELFLYDLKSVDSQIH---KNW 195

Query: 164 IGFDFERF 171
            G D  R 
Sbjct: 196 TGADNHRI 203


>gi|77918971|ref|YP_356786.1| hypothetical protein Pcar_1369 [Pelobacter carbinolicus DSM 2380]
 gi|77545054|gb|ABA88616.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380]
          Length = 471

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 23/113 (20%)

Query: 16  EGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE 75
           EG   G   +F     CN            +C +C T                  +D + 
Sbjct: 75  EG---GWSCLFI-TGRCN-----------CRCFYCPTAQTENDLPTTNTVEFRTPSDYVG 119

Query: 76  EQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKR---GFEIAVETNGTIE 123
                G +      +TGGEPLL     L  ++A+ K    G  + + TNGT+ 
Sbjct: 120 YLERFGFRGA---SVTGGEPLLNFKRSLAYVRAIKKHFGDGMHVWLYTNGTLA 169


>gi|65317439|ref|ZP_00390398.1| COG0535: Predicted Fe-S oxidoreductases [Bacillus anthracis str.
           A2012]
          Length = 284

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C FC          +  ++ +V+  A  +++     +    +   
Sbjct: 7   CNL-----------ACSFC------PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK- 48

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 49  --GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 79


>gi|210621248|ref|ZP_03292554.1| hypothetical protein CLOHIR_00497 [Clostridium hiranonis DSM 13275]
 gi|210154859|gb|EEA85865.1| hypothetical protein CLOHIR_00497 [Clostridium hiranonis DSM 13275]
          Length = 325

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 52/156 (33%), Gaps = 52/156 (33%)

Query: 20  AGRVA-VFCRFSGCNLWSGREQDRLSA--------------QCRFC-------------D 51
           AG    VF  F GC L     Q+                   CR C             D
Sbjct: 40  AGLRTTVF--FKGCPLRCKWCQNPEGLSAKKRPIYFKNSCIHCRICEKVSKENQIEYRDD 97

Query: 52  TDFVGIQGTKG-----------------GRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
             +  +   +G                   Y V++L + I+E  +    +G     +GGE
Sbjct: 98  RPYFNLDYKEGFDNLIKACPSGAIRYDSKEYVVEELLEKIKEDQVFFRNDGG-VTFSGGE 156

Query: 95  PLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGI 128
           PL+Q    V +++   + G   A+ET  T+  P  I
Sbjct: 157 PLMQGEFLVEILKRCKEEGIHTAIET--TMFAPLEI 190


>gi|29899152|gb|AAP03119.1| hypothetical protein [Streptomyces griseochromogenes]
          Length = 344

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 20/97 (20%)

Query: 26  FCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           F R    CN           A C  CD  F   + T   R++++   +L+      G   
Sbjct: 24  FIRLLEACN-----------ADCFMCD--FALSRDTF--RFSLEDFDELLPRAVEAGVGY 68

Query: 85  GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
            R+   TGGEPL+  DV  L++     G ++++ TNG
Sbjct: 69  IRF---TGGEPLMHTDVAELVRRGTDAGMKMSIITNG 102


>gi|303230017|ref|ZP_07316791.1| pyruvate formate-lyase 1-activating enzyme [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515383|gb|EFL57351.1| pyruvate formate-lyase 1-activating enzyme [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 261

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 32/116 (27%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC +           +C +C   DT     +  +     V+++    E      
Sbjct: 23  VF--LQGCPM-----------RCAYCHNPDT--WSEESQEAKFMTVEEIWQQYERNRQFY 67

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP 135
              G    +TGGE L+Q+D  + L    ++R     ++T+G          IC  P
Sbjct: 68  TNGG--ITVTGGEALMQMDFVIELFTYFSERNVHTCLDTSG----------ICFDP 111


>gi|251772215|gb|EES52785.1| Radical SAM domain protein [Leptospirillum ferrodiazotrophum]
          Length = 338

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C       +     R + +Q    +EE             + 
Sbjct: 38  CNL-----------ECAGCG-KIQYPEEILKKRLSPEQCIRAVEECG------APVVTIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+  ++  ++ A+  R   + + TNG I   +G++ I  SP     + + G +E
Sbjct: 80  GGEPLIHPEIGEIVSAMIARKKFVYLCTNG-ILLERGLETISPSPYLTFSVHLDGLRE 136


>gi|332112539|gb|EGJ12332.1| radical SAM family protein [Rubrivivax benzoatilyticus JA2]
          Length = 389

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 19/94 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG-RYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C +C      ++ ++G   Y +DQL   I +Q    E    Y   
Sbjct: 38  CNL-----------KCSYCSIAEGDVRESQGHVAYTMDQLDAFIAQQLAGKEV---YVTF 83

Query: 91  TGGEPLLQVDVPLIQALNKRG--FEIAVETNGTI 122
            GGEP L  + P I+A+ +R   F   ++TNGT+
Sbjct: 84  YGGEPTL--NRPFIEAVMQRHPLFRFQLQTNGTL 115


>gi|301063643|ref|ZP_07204157.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300442291|gb|EFK06542.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 351

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 16/92 (17%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV- 89
           GCNL            CR C   ++  +    G  +      L        +  G   V 
Sbjct: 4   GCNL-----------ACRHC---WIQPKFQGSGHSSPAMDLGLFRLIIDQAKPLGLSVVK 49

Query: 90  LTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           LTGGEPL+   +  ++  + +    + VETNG
Sbjct: 50  LTGGEPLIHPRINEMLDYIKREDLRLTVETNG 81


>gi|91774915|ref|YP_544671.1| GTP cyclohydrolase subunit MoaA [Methylobacillus flagellatus KT]
 gi|91708902|gb|ABE48830.1| GTP cyclohydrolase subunit MoaA [Methylobacillus flagellatus KT]
          Length = 329

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGT-KGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           N       DR   +C +C                  +++  ++      G    R   +T
Sbjct: 17  NYLRLSVTDRCDLRCHYC-MPVGFSDYEIPDNWLTFEEIERVVNAFAKLGVNAVR---VT 72

Query: 92  GGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPPQGIDWIC 132
           GGEPLL+ D+  LI  L++  G   I++ TNGT       D   
Sbjct: 73  GGEPLLRKDLATLISNLSRINGLSDISLSTNGTQLARYAKDLKT 116


>gi|261402990|ref|YP_003247214.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanocaldococcus vulcanius M7]
 gi|261369983|gb|ACX72732.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanocaldococcus vulcanius M7]
          Length = 241

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 32/126 (25%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           +F    GCN+           +C +C +   +           +++L   I+  +     
Sbjct: 24  IF--LHGCNM-----------KCPYCHNLKHIL---QHKKEMTIEELFKDIDFLFADA-- 65

Query: 84  EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVS 134
                V++GGEP LQ D  + + +   K    + ++TNGT             +D++ V 
Sbjct: 66  ----IVISGGEPTLQKDAVIEIARYAKKNNLPVKIDTNGTHPEVIEELVKNDLVDYVAVD 121

Query: 135 PKAGCD 140
            K   D
Sbjct: 122 VKCRFD 127


>gi|238927635|ref|ZP_04659395.1| [formate-C-acetyltransferase]-activating enzyme [Selenomonas
           flueggei ATCC 43531]
 gi|238884560|gb|EEQ48198.1| [formate-C-acetyltransferase]-activating enzyme [Selenomonas
           flueggei ATCC 43531]
          Length = 251

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 29/127 (22%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
            E F ++ G G        VF    GC             +C++C       +   G   
Sbjct: 11  TESFGSVDGPGIRFI----VFV--QGC-----------RYRCQYCHNPETW-EREGGYEA 52

Query: 66  NVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG- 120
             +++     + W       R     ++GGEPLLQ++    L +   ++G    ++T G 
Sbjct: 53  TAEEI---FRQAWRYRPYWKRTGGITVSGGEPLLQLEFVTELFRLAKEKGVNTVIDTAGE 109

Query: 121 --TIEPP 125
             T + P
Sbjct: 110 PFTYDEP 116


>gi|18312025|ref|NP_558692.1| metallo cofactor biosynthesis protein [Pyrobaculum aerophilum str.
           IM2]
 gi|18159450|gb|AAL62874.1| metallo cofactor biosynthesis protein [Pyrobaculum aerophilum str.
           IM2]
          Length = 384

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 18/96 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   ++     + G  N  +  D++++     E      + T
Sbjct: 46  CNL-----------KCVHC---YIDAGLAEPGELNTKEALDVVDQM---AEVGVPLILFT 88

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ 126
           GGEPL + D   + +    RG ++ + TNGT+  P+
Sbjct: 89  GGEPLTRPDFFEIAEYAKDRGIKLVLSTNGTLITPE 124


>gi|90422688|ref|YP_531058.1| glycyl-radical activating protein [Rhodopseudomonas palustris
           BisB18]
 gi|90104702|gb|ABD86739.1| Glycyl-radical enzyme activating [Rhodopseudomonas palustris
           BisB18]
          Length = 306

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           KG    V Q+   +++      + G    L+GGEPL+Q D  + L++A   +G+  A+ET
Sbjct: 107 KGRSMTVWQVMQELQKDATNYRRSGGGITLSGGEPLVQSDFALELLKACKDKGWSTAMET 166

Query: 119 NGTIE 123
            G + 
Sbjct: 167 TGNVP 171


>gi|116494898|ref|YP_806632.1| pyruvate-formate lyase-activating enzyme [Lactobacillus casei ATCC
           334]
 gi|227535104|ref|ZP_03965153.1| [formate-C-acetyltransferase]-activating enzyme [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|116105048|gb|ABJ70190.1| Pyruvate-formate lyase-activating enzyme [Lactobacillus casei ATCC
           334]
 gi|227187245|gb|EEI67312.1| [formate-C-acetyltransferase]-activating enzyme [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 283

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 37/131 (28%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +C++C   DT  +G+  
Sbjct: 32  VESFGSVDGPG---------IRFVVFMQGC-----------RMRCQYCHNPDTWNIGV-- 69

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117
             G     DQ+    +        +G     +GGE L+Q+D  + L       G    ++
Sbjct: 70  --GEEMTADQILADAQRYKAFWGDQGG-ITCSGGESLVQIDFILELFTKAKALGISTCLD 126

Query: 118 TNG---TIEPP 125
           T+G   T + P
Sbjct: 127 TSGGPFTRDQP 137


>gi|301066458|ref|YP_003788481.1| pyruvate-formate lyase-activating enzyme [Lactobacillus casei str.
           Zhang]
 gi|300438865|gb|ADK18631.1| Pyruvate-formate lyase-activating enzyme [Lactobacillus casei str.
           Zhang]
          Length = 283

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 37/131 (28%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +C++C   DT  +G+  
Sbjct: 32  VESFGSVDGPG---------IRFVVFMQGC-----------RMRCQYCHNPDTWNIGV-- 69

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117
             G     DQ+    +        +G     +GGE L+Q+D  + L       G    ++
Sbjct: 70  --GEEMTADQILADAQRYKAFWGDQGG-ITCSGGESLVQIDFILELFTKAKALGISTCLD 126

Query: 118 TNG---TIEPP 125
           T+G   T + P
Sbjct: 127 TSGGPFTRDQP 137


>gi|253689906|ref|YP_003019096.1| glycyl-radical enzyme activating protein family [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756484|gb|ACT14560.1| glycyl-radical enzyme activating protein family [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 316

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 46  QCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-- 102
            CR C+T    G     G    V +L ++I + +      G    L+GGE  LQ D    
Sbjct: 97  GCRKCETACLSGALDVIGQEMTVTELMEIIMQDYPFYLSSGGGVTLSGGEMSLQTDFAVD 156

Query: 103 LIQALNKRGFEIAVETNGT 121
           L+ A  +     AVET GT
Sbjct: 157 LLTACKRMMIHTAVETQGT 175


>gi|169334682|ref|ZP_02861875.1| hypothetical protein ANASTE_01085 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257420|gb|EDS71386.1| hypothetical protein ANASTE_01085 [Anaerofustis stercorihominis DSM
           17244]
          Length = 294

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119
           G      +L D I  +    +  G     +GGEPL+Q D  L  I+ L +    +A+ET+
Sbjct: 98  GEYITPKELVDRIMPEMEYYKTSGGGVTFSGGEPLMQSDFLLEVIKILKENDVNVAIETD 157

Query: 120 GTIE 123
           G ++
Sbjct: 158 GFVD 161


>gi|239631502|ref|ZP_04674533.1| pyruvate-formate lyase-activating enzyme [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|239525967|gb|EEQ64968.1| pyruvate-formate lyase-activating enzyme [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 283

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 37/131 (28%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +C++C   DT  +G+  
Sbjct: 32  VESFGSVDGPG---------IRFVVFMQGC-----------RMRCQYCHNPDTWNIGV-- 69

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117
             G     DQ+    +        +G     +GGE L+Q+D  + L       G    ++
Sbjct: 70  --GEEMTADQILADAQRYKAFWGDQGG-ITCSGGESLVQIDFILELFTKAKALGISTCLD 126

Query: 118 TNG---TIEPP 125
           T+G   T + P
Sbjct: 127 TSGGPFTRDQP 137


>gi|153001208|ref|YP_001366889.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica
           OS185]
 gi|160875881|ref|YP_001555197.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica
           OS195]
 gi|217972870|ref|YP_002357621.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica
           OS223]
 gi|151365826|gb|ABS08826.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS185]
 gi|160861403|gb|ABX49937.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS195]
 gi|217498005|gb|ACK46198.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS223]
 gi|315268072|gb|ADT94925.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS678]
          Length = 246

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 41/123 (33%), Gaps = 33/123 (26%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F T+ G G          RF     GC             +C++C   DT       
Sbjct: 10  VESFGTVDGPG---------IRFITFMQGC-----------LMRCQYCHNRDT----WDL 45

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117
             G    VD+L   I       +        +GGE +LQ +    L  A  + G    ++
Sbjct: 46  DGGKEVLVDELMSQIISYRPFLDASNGGVTASGGEAILQAEFVAELFTACQQEGIHTCLD 105

Query: 118 TNG 120
           TNG
Sbjct: 106 TNG 108


>gi|307265925|ref|ZP_07547474.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919094|gb|EFN49319.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 228

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 40/163 (24%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
             VF   SGCN            +C +C              Y +     +  E+     
Sbjct: 19  ATVFI--SGCNF-----------KCPYC-----------HNSYLIPIREGIRSEKDFFNY 54

Query: 83  KEGRY-----CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPP-------QGID 129
            + R        +TGGEP L   +   I+ +    F + ++TNG+           + +D
Sbjct: 55  LKKRANLIEGVCITGGEPTLWRGLKNFIKNIKDLHFSVKLDTNGSRPQVLEDLIKGELVD 114

Query: 130 WICVSPKAGCD---LKIKGGQELKLVFPQVNVSPENYIGFDFE 169
           +I +  KA  +   + +K  +++  +   V +   ++I ++F 
Sbjct: 115 YIAMDIKAPIEKYGIFLKNKKDIDNIQKSVEIIKNSHIDYEFR 157


>gi|284167118|ref|YP_003405396.1| radical SAM protein [Haloterrigena turkmenica DSM 5511]
 gi|284016773|gb|ADB62723.1| Radical SAM domain protein [Haloterrigena turkmenica DSM 5511]
          Length = 319

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 16/102 (15%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL                          +    + ++    I+E       +     +
Sbjct: 19  GCNLHCDHCLSGSGPG------------HQQPDELSTEEAMAFIDELDEMDVFQ---VNI 63

Query: 91  TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
            GGEP ++ D + L++ L  R     V TNGT    + +D I
Sbjct: 64  GGGEPFIRPDMLELLEELTDRDISTCVSTNGTQLDEETLDRI 105


>gi|39998543|ref|NP_954494.1| radical SAM domain-containing protein [Geobacter sulfurreducens
           PCA]
 gi|39985490|gb|AAR36844.1| radical SAM domain protein [Geobacter sulfurreducens PCA]
 gi|298507486|gb|ADI86209.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter sulfurreducens KN400]
          Length = 356

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 17/95 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              CNL            CR C +D    +G     +  ++   L++E     +      
Sbjct: 15  TQKCNLKC--------VHCR-CSSDLTSSEGD----FTTEEGKKLLKE---IADFSKPVI 58

Query: 89  VLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122
           VL+GGEPL+ Q    L +     G  + + TNG +
Sbjct: 59  VLSGGEPLMRQDIFELAEYGTSLGLRMCMATNGAL 93


>gi|134295140|ref|YP_001118875.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           vietnamiensis G4]
 gi|134138297|gb|ABO54040.1| GTP cyclohydrolase subunit MoaA [Burkholderia vietnamiensis G4]
          Length = 370

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 61/162 (37%), Gaps = 36/162 (22%)

Query: 28  RFSGCNLWSGREQ--DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           RF+   L   R    DR + +C +C      D D+  +  +       +++ + +   ++
Sbjct: 31  RFAR-PLRDLRISVTDRCNFRCVYCMPRDVFDKDYPFLPHS--ALLTHEEI-ERVARLFV 86

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------P 125
               E     +TGGEPLL+ ++  LI+ L +      R  ++ + TNG++          
Sbjct: 87  AHGVEK--IRITGGEPLLRKNLEFLIERLARLTTHDGRPLDVTLTTNGSLLARKARALKD 144

Query: 126 QGIDWICVS--------PKAGCDLKIKGGQELKLVFPQVNVS 159
            G+  + VS         K   D        L  +F    V 
Sbjct: 145 AGLTRVTVSLDALDDALFKRMNDADFASADVLDGIFAAQAVD 186


>gi|327400584|ref|YP_004341423.1| Radical SAM domain-containing protein [Archaeoglobus veneficus
           SNP6]
 gi|327316092|gb|AEA46708.1| Radical SAM domain protein [Archaeoglobus veneficus SNP6]
          Length = 534

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 18/106 (16%)

Query: 31  GCNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           GC    G                 +R    C +C   +    G      +V+Q+A ++  
Sbjct: 97  GCPFSCGLCPLHKSHTALLNIVLTNRCDLACWYC-FFYAKRAGYVYEP-SVEQIARMVRT 154

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
                        LTGGEP L+ D+  +I+A+   G   I + TNG
Sbjct: 155 ARNMKPVGCNAVQLTGGEPTLRDDLIDIIKAIKAEGIDHIQLNTNG 200


>gi|191638408|ref|YP_001987574.1| Formate acetyltransferase activating enzyme [Lactobacillus casei
           BL23]
 gi|190712710|emb|CAQ66716.1| Formate acetyltransferase activating enzyme [Lactobacillus casei
           BL23]
 gi|327382437|gb|AEA53913.1| Pyruvate formate-lyase activating enzyme [Lactobacillus casei LC2W]
 gi|327385636|gb|AEA57110.1| Pyruvate formate-lyase activating enzyme [Lactobacillus casei
           BD-II]
          Length = 283

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 37/131 (28%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +C++C   DT  +G+  
Sbjct: 32  VESFGSVDGPG---------IRFVVFMQGC-----------RMRCQYCHNPDTWNIGV-- 69

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117
             G     DQ+    +        +G     +GGE L+Q+D  + L       G    ++
Sbjct: 70  --GEEMTADQILADAQRYKAFWGDQGG-ITCSGGESLVQIDFILELFTKAKALGISTCLD 126

Query: 118 TNG---TIEPP 125
           T+G   T + P
Sbjct: 127 TSGGPFTRDQP 137


>gi|108805936|ref|YP_645873.1| radical SAM family protein [Rubrobacter xylanophilus DSM 9941]
 gi|108767179|gb|ABG06061.1| Radical SAM [Rubrobacter xylanophilus DSM 9941]
          Length = 367

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 18/117 (15%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL           +              +       +   LI+E     E +  Y  +
Sbjct: 23  GCNLRCAHCLSASGVR--------------RENELTTGEAKRLIDEW---AEMQVFYINV 65

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
            GGEPL + D   L+    +RG  +   TNGT+   +  DWI         + + G 
Sbjct: 66  GGGEPLTRPDFFELMDYCLERGIGVKFSTNGTLVDDEAADWISSRDYLDVQVSLDGA 122


>gi|160902510|ref|YP_001568091.1| radical SAM domain-containing protein [Petrotoga mobilis SJ95]
 gi|160360154|gb|ABX31768.1| Radical SAM domain protein [Petrotoga mobilis SJ95]
          Length = 468

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 18/91 (19%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL            C++C   +      K    + ++L  ++E+     ++      +
Sbjct: 135 GCNL-----------NCKYC---YRREDIRKSTFIDSEKLKVMVEKL---NKETLSMVEI 177

Query: 91  TGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           TGGEP L      +++ + +RG  + V TNG
Sbjct: 178 TGGEPTLHPHFTEILKYILERGITVGVLTNG 208


>gi|94312101|ref|YP_585311.1| radical SAM family protein [Cupriavidus metallidurans CH34]
 gi|93355953|gb|ABF10042.1| Heme d1 biosynthesis protein NirJ [Cupriavidus metallidurans CH34]
          Length = 387

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 25/112 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         +      DTDF G   T      V  + D ++   +         +L+
Sbjct: 36  CNLNCKHCYSTSA------DTDFKGELSTG----EVMAVLDQLKAARVPA------LILS 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGT--------IEPPQGIDWICVS 134
           GGEPLL+ D+  +     + GF +++ +NGT             G D++ VS
Sbjct: 80  GGEPLLRPDLYEIAARARELGFHLSLSSNGTLLDAAHAARLAAAGFDYVGVS 131


>gi|304313947|ref|YP_003849094.1| glycyl radical-activating enzyme [Methanothermobacter marburgensis
           str. Marburg]
 gi|302587406|gb|ADL57781.1| predicted glycyl radical-activating enzyme [Methanothermobacter
           marburgensis str. Marburg]
          Length = 231

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 27/121 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +F   +GCN            +C +C           G   ++  + + +E+     +  
Sbjct: 21  IF--TAGCNF-----------RCPYC---HNPELIDGGVEADLSDILEDMEKYTDFVDA- 63

Query: 85  GRYCVLTGGEPLLQVDVPLIQALNKR--GFEIAVETNG-----TIEPPQGIDWICVSPKA 137
               V++GGEPLLQVD   +   + R  G    ++TNG            +D++ V  KA
Sbjct: 64  ---VVVSGGEPLLQVDDVEVVLQHARSLGLHTKLDTNGYSPGALRRLLPLLDYVAVDVKA 120

Query: 138 G 138
            
Sbjct: 121 P 121


>gi|118579348|ref|YP_900598.1| radical SAM domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118502058|gb|ABK98540.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379]
          Length = 497

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQ 105
           C +C   +      K      D+  D+I +    G    R  ++ GGEP L    + +++
Sbjct: 42  CIYC---YASQASAKRDDLTRDEFLDIIGQARELG---ARKIIILGGEPTLYPHLMEMVR 95

Query: 106 ALNKRGFEIAVETNGTIEPPQ 126
            +   G ++ + TNG    PQ
Sbjct: 96  HIRSTGMDVELFTNGANVTPQ 116


>gi|261253301|ref|ZP_05945874.1| pyruvate formate-lyase activating enzyme [Vibrio orientalis CIP
           102891]
 gi|260936692|gb|EEX92681.1| pyruvate formate-lyase activating enzyme [Vibrio orientalis CIP
           102891]
          Length = 215

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 49/140 (35%), Gaps = 15/140 (10%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101
           +C++C   DT         G    V+++    +         G     +GGE +LQ +  
Sbjct: 2   RCKYCHNRDT----WDTHDGKEVTVEEIISEAKSYRHFMNASGGGVTCSGGEAMLQPEFV 57

Query: 102 -PLIQALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
               +A +  G    ++TNG I    + ID +        DL +   + +K       + 
Sbjct: 58  RDFFRAAHNEGIHTCLDTNGYIRKHTEVIDEVL----EATDLVMLDLKHMKDEVHHDFIG 113

Query: 160 PENYIGFDFERFSLQPMDGP 179
             N    DF R  L  +   
Sbjct: 114 VSNKRTLDFAR-YLHKIGQK 132


>gi|326390978|ref|ZP_08212528.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993020|gb|EGD51462.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 228

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 20/102 (19%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
             VF   SGCN            +C +C   ++       G  +  +  D ++++    E
Sbjct: 19  ATVFV--SGCNF-----------KCPYCHNSYLIQIRE--GIRSEKEFFDYLKKRANLIE 63

Query: 83  KEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
                  +TGGEP L       I+ +    F + ++TNG+  
Sbjct: 64  G----VCITGGEPTLWKGLQDFIKNIKDLNFSVKLDTNGSRP 101


>gi|302342136|ref|YP_003806665.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfarculus baarsii DSM 2075]
 gi|301638749|gb|ADK84071.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfarculus baarsii DSM 2075]
          Length = 247

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 42/128 (32%), Gaps = 35/128 (27%)

Query: 16  EGGHAGRVAV-------FC--R--------FSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
           EG  A   A+       F   R          GCN             C +C        
Sbjct: 11  EGVGAALPAIKGFLETSFVDWRGCIAAVLFLPGCNF-----------ACPYC---HNHAL 56

Query: 59  GTKGGRYNVDQLADLIEEQWI-TGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAV 116
             +   Y    L D++       G  +G   V++GGEP + Q    L+  +   GF + +
Sbjct: 57  AVEPESYQTRPLEDVLARLRPFVGWIDG--VVVSGGEPTVNQGLERLLALIKAEGFAVKL 114

Query: 117 ETNGTIEP 124
           +TNG    
Sbjct: 115 DTNGHRPA 122


>gi|154509285|ref|ZP_02044927.1| hypothetical protein ACTODO_01810 [Actinomyces odontolyticus ATCC
           17982]
 gi|293189709|ref|ZP_06608425.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces
           odontolyticus F0309]
 gi|153798919|gb|EDN81339.1| hypothetical protein ACTODO_01810 [Actinomyces odontolyticus ATCC
           17982]
 gi|292821299|gb|EFF80242.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces
           odontolyticus F0309]
          Length = 292

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 50/137 (36%), Gaps = 30/137 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   +GC L           +C +C   DT F+   G      +  +L   I    
Sbjct: 68  RMTVF--LNGCPL-----------RCLYCHNPDT-FLMKDGAP---VSDTELLSRIARYR 110

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP---LIQALNKRGFEIAVETNGTI------EPPQGID 129
                      L+GGE L+Q       L+ A  + G    ++T+G +      E    ID
Sbjct: 111 RIFRTTQGGITLSGGEVLMQPQFAKRILMGA-KEMGVHTCIDTSGFLGANCDDEMLDAID 169

Query: 130 WICVSPKAGCDLKIKGG 146
            + +  K+G +   K  
Sbjct: 170 LVLLDVKSGNEETYKKA 186


>gi|282901591|ref|ZP_06309510.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Cylindrospermopsis raciborskii CS-505]
 gi|281193517|gb|EFA68495.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Cylindrospermopsis raciborskii CS-505]
          Length = 248

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C +C   DT         G    V +L   IE+   
Sbjct: 26  IRFVIFTQGC-----------LLRCLYCHNPDTR----DMKTGKETTVGELVTEIEKYRS 70

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
             +  G    ++GGEPLLQ +    + +   K     A++T+G
Sbjct: 71  YMKFTGGGVTISGGEPLLQPEFVREVFRQCQKLNIHTALDTSG 113


>gi|229088605|ref|ZP_04220259.1| Radical SAM domain protein [Bacillus cereus Rock3-44]
 gi|228694712|gb|EEL48034.1| Radical SAM domain protein [Bacillus cereus Rock3-44]
          Length = 292

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 20/92 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC          +    +V++ +  +++     +    +    
Sbjct: 15  CNL-----------ACSFC-----PPTERQKQFLSVEEFSKRLDQIKPHTDYIYLHVK-- 56

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 57  -GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 87


>gi|124027035|ref|YP_001012355.1| pyruvate-formate lyase-activating enzyme - protein [Hyperthermus
           butylicus DSM 5456]
 gi|123977729|gb|ABM80010.1| pyruvate-formate lyase-activating enzyme - conserved archaeal
           protein [Hyperthermus butylicus DSM 5456]
          Length = 254

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 26/102 (25%)

Query: 29  FSGCNLWSGREQDRLSAQ-----CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
             GCNL      +   A+     CR+                 +D+L + +         
Sbjct: 28  LCGCNLRCPFCHNWKLAEMLPGTCRW---------------AKLDELVEALS--GAARLV 70

Query: 84  EGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
           +  +   TGGEPLLQ      L++A +K G   ++ TN T+ 
Sbjct: 71  DVLHV--TGGEPLLQPGRLRGLLEASHKLGLGNSINTNCTLP 110


>gi|170696802|ref|ZP_02887909.1| molybdenum cofactor biosynthesis protein A [Burkholderia graminis
           C4D1M]
 gi|170138291|gb|EDT06512.1| molybdenum cofactor biosynthesis protein A [Burkholderia graminis
           C4D1M]
          Length = 369

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 25/136 (18%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +  +       +++  L       G ++ R   LTGGE
Sbjct: 45  DRCNFRCVYCMPRAVFDKDYAFLPHS--ALLTFEEIERLARLFVAHGVEKIR---LTGGE 99

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ ++  LI+ L +      R  ++ + TNG++           G+  + VS  A  D
Sbjct: 100 PLLRKNLEFLIERLAQLTTPAGRPLDLTLTTNGSLLARKARSLKDAGLTRVTVSLDALDD 159

Query: 141 LKIKGGQELKLVFPQV 156
              +   +       V
Sbjct: 160 TLFRRMNDADFAVADV 175


>gi|56551923|ref|YP_162762.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|260752522|ref|YP_003225415.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|56543497|gb|AAV89651.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|258551885|gb|ACV74831.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 200

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 26/125 (20%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
              VFC   GC           S  C +C   +    I  + G R   + + D +E++  
Sbjct: 24  VATVFC--QGC-----------SWDCPYCHNQSLRPAIDNS-GNRIPWEDVLDFLEQRRG 69

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT-----IEPPQGIDWICV 133
             +      V +GGEP LQ  +P  +Q +   G +I + T G            + W+  
Sbjct: 70  LLDG----VVFSGGEPTLQAALPEAMQIVRDMGLKIGLHTAGMKPERFRPLLPLVTWVGF 125

Query: 134 SPKAG 138
             KA 
Sbjct: 126 DIKAP 130


>gi|11499897|ref|NP_071141.1| hypothetical protein AF2316 [Archaeoglobus fulgidus DSM 4304]
 gi|2648203|gb|AAB88940.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 518

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 11/98 (11%)

Query: 32  CN-------LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           CN       L +    +R    C +C   +    G       ++Q+ +++ +        
Sbjct: 92  CNNHKSHTALLNIVLTNRCDLACWYC-FFYARRAGYVYEP-TIEQIREMVRKAKNMKPIG 149

Query: 85  GRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
                LTGGEP L+ D+  +I+ + + G+  I + TNG
Sbjct: 150 CNAVQLTGGEPTLRDDLIDIIRMIKEEGYDHIQLNTNG 187


>gi|296130601|ref|YP_003637851.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Cellulomonas flavigena DSM 20109]
 gi|296022416|gb|ADG75652.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Cellulomonas flavigena DSM 20109]
          Length = 250

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 39/132 (29%), Gaps = 36/132 (27%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIE 75
               F    GC             +C +C      DT   G+                + 
Sbjct: 52  VATAF--LQGCP-----------WRCTYCHNSAILDTRLPGVVPWS-----------RVA 87

Query: 76  EQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE-----PPQGID 129
           +            VL+GGEP  Q   V   + + + GF + + T G            +D
Sbjct: 88  DLLRRRRGLLDGLVLSGGEPTRQAGVVAAAREVKEAGFLVGLHTAGAYPSRLRELLPYVD 147

Query: 130 WICVSPKAGCDL 141
           W+ +  KA   L
Sbjct: 148 WVGLDVKAPARL 159


>gi|311106097|ref|YP_003978950.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Achromobacter xylosoxidans A8]
 gi|310760786|gb|ADP16235.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Achromobacter xylosoxidans A8]
          Length = 270

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 28/127 (22%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G++A  VF   +GC             +C +C         T+  RY+  +    +E + 
Sbjct: 68  GQLAAVVFI--AGCP-----------WRCHYC---HNVELQTRAARYDWRETRAFLETRK 111

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQG-----IDWIC 132
              +      V +GGEPL +  +P +I+ + + G+ + + T G            +DW+ 
Sbjct: 112 GLLDA----IVFSGGEPLSEPRLPQMIRDVRRMGYRVGLHTAGIYPLRLADVLRYLDWVG 167

Query: 133 VSPKAGC 139
           +  KA  
Sbjct: 168 LDIKADA 174


>gi|254779259|ref|YP_003057364.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           B38]
 gi|254001170|emb|CAX29129.1| Molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           B38]
          Length = 321

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 31/174 (17%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLLQV-DV 101
           +C++C      +  T    ++ ++L    +++E   I  ++  +   +TGGEPLL+    
Sbjct: 24  RCQYC------MPATPLDFFDDEELLPLDNVLEFLKIAIDEGVKKIRITGGEPLLRKGLD 77

Query: 102 PLIQALNKRGFEIA--VETNGTIEPP-------QGIDWICV---SPKAGCDLKIKGGQEL 149
             I  L+    E+A  + TNG +           G+  + V   S K+   LKI     L
Sbjct: 78  EFIAKLHAYNKEVALVLSTNGFLLKKMAKGLKNAGLSRVNVSLDSLKSDRVLKISQKDAL 137

Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQ 203
           K     +  S +  +     + ++  M G   +E   L + Y         S+Q
Sbjct: 138 KNTLEGIEESLKVGLKL---KLNMVVMKGVNDDEILEL-LEYAKNR-----SIQ 182


>gi|160940560|ref|ZP_02087904.1| hypothetical protein CLOBOL_05455 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436520|gb|EDP14287.1| hypothetical protein CLOBOL_05455 [Clostridium bolteae ATCC
           BAA-613]
          Length = 355

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 14/104 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C++C    +        R+++  L ++            R+  +TGGEPL++ D
Sbjct: 21  DRCNLRCKYC----MPYGVECVPRWDILSLEEIQAVGICAAGLGIRHIKVTGGEPLVRRD 76

Query: 101 -VPLIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134
              L++ L    G E + + TNG +           GID I +S
Sbjct: 77  CCQLVKQLKSTPGIEKVTITTNGVLLERYLDDLAEAGIDGINIS 120


>gi|153953731|ref|YP_001394496.1| Act [Clostridium kluyveri DSM 555]
 gi|219854350|ref|YP_002471472.1| hypothetical protein CKR_1007 [Clostridium kluyveri NBRC 12016]
 gi|146346612|gb|EDK33148.1| Act [Clostridium kluyveri DSM 555]
 gi|219568074|dbj|BAH06058.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 242

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC L           +C FC   DT        +G     ++L   + +  +  
Sbjct: 22  VF--FQGCRL-----------RCAFCHNPDT----WIMDEGMEIEANELIKKVLKFKVYF 64

Query: 82  EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
           EK G     +GG+PL+Q    +   +   +     A++T+G
Sbjct: 65  EKSGGGVTCSGGDPLMQPEFLLEFFKLCKENNINTALDTSG 105


>gi|241761762|ref|ZP_04759848.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241373676|gb|EER63236.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 200

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 26/125 (20%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
              VFC   GC           S  C +C   +    I  + G R   + + D +E++  
Sbjct: 24  VATVFC--QGC-----------SWDCPYCHNQSLRPAIDNS-GNRIPWEDVLDFLEQRRG 69

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT-----IEPPQGIDWICV 133
             +      V +GGEP LQ  +P  +Q +   G +I + T G            + W+  
Sbjct: 70  LLDG----VVFSGGEPTLQAALPEAMQIVRDMGLKIGLHTAGMKPERFRPLLPLVTWVGF 125

Query: 134 SPKAG 138
             KA 
Sbjct: 126 DIKAP 130


>gi|88602761|ref|YP_502939.1| radical SAM family protein [Methanospirillum hungatei JF-1]
 gi|88188223|gb|ABD41220.1| GTP cyclohydrolase subunit MoaA [Methanospirillum hungatei JF-1]
          Length = 292

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 17/93 (18%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           SGCNL           +C +C       +G          L D+     + G    R   
Sbjct: 20  SGCNL-----------RCVYC-----HREGETKPE-TPLSLEDIRAILDVAGNIGIRTVK 62

Query: 90  LTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
            TGGEPLL+ D+  I      G E ++ TNGT+
Sbjct: 63  FTGGEPLLREDIVEIIRSVPPGIESSMTTNGTL 95


>gi|312890091|ref|ZP_07749635.1| pyruvate formate-lyase activating enzyme [Mucilaginibacter paludis
           DSM 18603]
 gi|311297623|gb|EFQ74748.1| pyruvate formate-lyase activating enzyme [Mucilaginibacter paludis
           DSM 18603]
          Length = 261

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 25/108 (23%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLAD-LIEEQWIT 80
           VF    GC             +C +C   D+    I    G    + +L    + E+   
Sbjct: 42  VFV--QGC-----------QFRCLYCHNPDS----IDVKGGSLVEITELVKRAVREKNYF 84

Query: 81  GEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126
           G + G    ++GGEPLLQ        + L+++G    +++NG +  P+
Sbjct: 85  GTEGG--VTVSGGEPLLQRSKLTSFFKLLHQQGINTCLDSNGRLNTPE 130


>gi|295102257|emb|CBK99802.1| pyruvate formate-lyase 1-activating enzyme [Faecalibacterium
           prausnitzii L2-6]
          Length = 250

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 27/118 (22%)

Query: 8   EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
           E F ++ G G        VF    GC           + +C++C       +G  G  + 
Sbjct: 14  ETFGSVDGPGVRFV----VF--LQGC-----------ALRCKYCHNPETWAEG--GEEWT 54

Query: 67  VDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
           VD+L    +  W      G+     ++GGEPL Q+       +    +G   A++T G
Sbjct: 55  VDKL---FQRAWRYRNYWGKRGGITVSGGEPLRQMEFLTAFFELARSKGVHTALDTAG 109


>gi|261368951|ref|ZP_05981834.1| molybdenum cofactor biosynthesis protein A [Subdoligranulum
           variabile DSM 15176]
 gi|282568904|gb|EFB74439.1| molybdenum cofactor biosynthesis protein A [Subdoligranulum
           variabile DSM 15176]
          Length = 320

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 13/104 (12%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +CR+C           G     +++ ++ +     G    +   LTGGEPL++ +
Sbjct: 18  DRCNLRCRYCMPAEGVPLRPHGEILRYEEIVEIAKAALALGIDTFK---LTGGEPLVRRE 74

Query: 101 VP-LIQALNKRG--FEIAVETNGTI-------EPPQGIDWICVS 134
           VP L+ AL       ++ + TNG +           G+D + VS
Sbjct: 75  VPALVAALKALPGTRQVTLTTNGLLLGAQLDALLAAGLDAVNVS 118


>gi|218551057|ref|YP_002384848.1| pyruvate formate lyase II activase [Escherichia fergusonii ATCC
           35469]
 gi|218358598|emb|CAQ91246.1| pyruvate formate lyase II activase [Escherichia fergusonii ATCC
           35469]
          Length = 292

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---EVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I     G    L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRASGGGVTLSGGEVLMQAEFATRF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 195


>gi|167749774|ref|ZP_02421901.1| hypothetical protein EUBSIR_00741 [Eubacterium siraeum DSM 15702]
 gi|167657257|gb|EDS01387.1| hypothetical protein EUBSIR_00741 [Eubacterium siraeum DSM 15702]
          Length = 237

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 19/125 (15%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
            RF     GC L  G   +  +               + G    V  +   +        
Sbjct: 19  VRFVLFLQGCPLRCGYCHNPETR------------DASGGKTATVKDVMQKVLRCRNYFG 66

Query: 83  KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140
           K G    ++GGEPL+Q      L +   ++G    ++T+G I      + + V+     D
Sbjct: 67  KNGG-ITVSGGEPLMQAKFVTELFKECKRQGINTCLDTSGCIMNDDVTELLKVTDLCMLD 125

Query: 141 LKIKG 145
           +K+  
Sbjct: 126 IKMTN 130


>gi|126460311|ref|YP_001056589.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126250032|gb|ABO09123.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548]
          Length = 380

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 18/96 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   ++     +       +  D++++     E      + T
Sbjct: 46  CNL-----------RCLHC---YIDAGEAEANELTTKEALDVVDQM---AEVGVPLILFT 88

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ 126
           GGEPL++ D   + Q    RG ++ + TNGT+  P+
Sbjct: 89  GGEPLVRRDFFEIAQYARDRGIKLVLSTNGTLITPE 124


>gi|83647117|ref|YP_435552.1| Fe-S oxidoreductase [Hahella chejuensis KCTC 2396]
 gi|83635160|gb|ABC31127.1| predicted Fe-S oxidoreductase [Hahella chejuensis KCTC 2396]
          Length = 378

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 14/111 (12%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            +       R +  CR C +  +       G     Q+ D +E+    G       +L+G
Sbjct: 19  PVVIWNLIRRCNLTCRHCYS--ISADIDFPGELTTAQVFDTLEDLKQMG---APAVILSG 73

Query: 93  GEPLLQVDVPLIQA-LNKRGFEIAVETNGTIE--------PPQGIDWICVS 134
           GEPLL+ D+ LI A     G  + + +NGT+            G D++ VS
Sbjct: 74  GEPLLRKDIFLIGAYAKSLGLYVGLSSNGTLMNRDTAAAISDTGFDYVGVS 124


>gi|50085587|ref|YP_047097.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
           sp. ADP1]
 gi|49531563|emb|CAG69275.1| coenzyme PQQ synthesis protein E (Coenzyme PQQ synthesis protein
           III) [Acinetobacter sp. ADP1]
          Length = 391

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    D+  ++       + D+  D+  +    G  +  +  
Sbjct: 17  PLWLLAELTYRCPLQCAYCSNPLDYAAVK----QELSTDEWKDVFRQARAMGSVQLGF-- 70

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
            +GGEPLL Q    LI+  ++ GF   + T+G
Sbjct: 71  -SGGEPLLRQDLSELIKYAHELGFYTNLITSG 101


>gi|116054237|ref|YP_788681.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|313111857|ref|ZP_07797650.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa 39016]
 gi|115589458|gb|ABJ15473.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310884152|gb|EFQ42746.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa 39016]
          Length = 387

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 27/113 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         +      D+DF        G     ++   I++    G    R  +L+
Sbjct: 37  CNLTCKHCYSTSA------DSDF-------RGELETAEILRGIDDLRAAG---VRVLILS 80

Query: 92  GGEPLLQVDVPLIQALNKR--GFEIAVETNGTIEPPQGI--------DWICVS 134
           GGEPL+  D+  I A + R  G  +A+ +NGT+     I        D++ +S
Sbjct: 81  GGEPLMHPDLFEIAA-HARQAGMFVALSSNGTLIDEGNIQRVAEARFDYVGIS 132


>gi|257051257|ref|YP_003129090.1| molybdenum cofactor biosynthesis protein A [Halorhabdus utahensis
           DSM 12940]
 gi|256690020|gb|ACV10357.1| molybdenum cofactor biosynthesis protein A [Halorhabdus utahensis
           DSM 12940]
          Length = 375

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 24/154 (15%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR +  C +C      DT   G         + D++  +IE   +  +        TGGE
Sbjct: 19  DRCNFDCVYCHNEGLGDTR--GPMAPSEEELSTDEVVRVIE---VAADHGVEAVKFTGGE 73

Query: 95  PLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
           P+L+ D+  I      G E ++ TNGT  P +  +             +      ++   
Sbjct: 74  PMLRTDLGEIVRRTPAGVETSMTTNGTFLPDRAAE-------------LADAGLERVNVS 120

Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
           Q  + PE++          Q + G     +  LA
Sbjct: 121 QDALDPEDFATLTQSGAYDQVLSGVEAALDAGLA 154


>gi|222053130|ref|YP_002535492.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221562419|gb|ACM18391.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 359

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 17/95 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              CNL            CR C +D    +G     +  D+   L++E     +      
Sbjct: 15  TQKCNLKC--------VHCR-CSSDLTSSEGD----FTTDEGKKLLKE---IADFSKPVV 58

Query: 89  VLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122
           VL+GGEPL+ Q    L       G  + + TNG +
Sbjct: 59  VLSGGEPLMRQDIFELAGYGTSLGLRMCMATNGAL 93


>gi|254237264|ref|ZP_04930587.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa C3719]
 gi|254243604|ref|ZP_04936926.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa 2192]
 gi|42821599|dbj|BAD11787.1| nirJ [Burkholderia cepacia]
 gi|126169195|gb|EAZ54706.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa C3719]
 gi|126196982|gb|EAZ61045.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa 2192]
          Length = 387

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 27/113 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         +      D+DF        G     ++   I++    G    R  +L+
Sbjct: 37  CNLTCKHCYSTSA------DSDF-------RGELETAEILRGIDDLRAAG---VRVLILS 80

Query: 92  GGEPLLQVDVPLIQALNKR--GFEIAVETNGTIEPPQGI--------DWICVS 134
           GGEPL+  D+  I A + R  G  +A+ +NGT+     I        D++ +S
Sbjct: 81  GGEPLMHPDLFEIAA-HARQAGMFVALSSNGTLIDEGNIQRVAEARFDYVGIS 132


>gi|282163554|ref|YP_003355939.1| hypothetical protein MCP_0884 [Methanocella paludicola SANAE]
 gi|282155868|dbj|BAI60956.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 366

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 14/91 (15%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL           Q    D+            +N+ Q   +I++    G        L
Sbjct: 21  GCNLHCRHCWIAPKYQ----DSKHTY----PSLPFNLFQ--SIIKQARPLGLAA---VKL 67

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           TGGEPL+  D+  +++ + +    + +ETNG
Sbjct: 68  TGGEPLMHPDINNILELIKQENLGLGIETNG 98


>gi|168186105|ref|ZP_02620740.1| putative pyruvate formate-lyase 3-activating enzyme [Clostridium
           botulinum C str. Eklund]
 gi|169296068|gb|EDS78201.1| putative pyruvate formate-lyase 3-activating enzyme [Clostridium
           botulinum C str. Eklund]
          Length = 310

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118
           G + +V ++ + +++ ++   + G    L+GGEPL+Q    + LI+     G   A+ET
Sbjct: 110 GEKRSVKEVVEDVKKDYVQFRRSGGGVTLSGGEPLMQPRFILNLIKGFKAVGLNTAIET 168


>gi|218889252|ref|YP_002438116.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa LESB58]
 gi|218769475|emb|CAW25235.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa LESB58]
          Length = 387

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 27/113 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         +      D+DF        G     ++   I++    G    R  +L+
Sbjct: 37  CNLTCKHCYSTSA------DSDF-------RGELETAEILRGIDDLRAAG---VRVLILS 80

Query: 92  GGEPLLQVDVPLIQALNKR--GFEIAVETNGTIEPPQGI--------DWICVS 134
           GGEPL+  D+  I A + R  G  +A+ +NGT+     I        D++ +S
Sbjct: 81  GGEPLMHPDLFEIAA-HARQAGMFVALSSNGTLIDEGNIQRVAEARFDYVGIS 132


>gi|15595708|ref|NP_249202.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa PAO1]
 gi|107099497|ref|ZP_01363415.1| hypothetical protein PaerPA_01000509 [Pseudomonas aeruginosa PACS2]
 gi|9946376|gb|AAG03900.1|AE004488_4 heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa PAO1]
 gi|1783281|dbj|BAA12681.1| NirJ [Pseudomonas aeruginosa]
          Length = 387

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 27/113 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         +      D+DF        G     ++   I++    G    R  +L+
Sbjct: 37  CNLTCKHCYSTSA------DSDF-------RGELETAEILRGIDDLRAAG---VRVLILS 80

Query: 92  GGEPLLQVDVPLIQALNKR--GFEIAVETNGTIEPPQGI--------DWICVS 134
           GGEPL+  D+  I A + R  G  +A+ +NGT+     I        D++ +S
Sbjct: 81  GGEPLMHPDLFEIAA-HARQAGMFVALSSNGTLIDEGNIQRVAEARFDYVGIS 132


>gi|317473349|ref|ZP_07932644.1| glycyl-radical enzyme activating protein family [Anaerostipes sp.
           3_2_56FAA]
 gi|316899185|gb|EFV21204.1| glycyl-radical enzyme activating protein family [Anaerostipes sp.
           3_2_56FAA]
          Length = 303

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 49/155 (31%), Gaps = 50/155 (32%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------QCRFC-------- 50
           F T  G+G       VF  F GC L     Q+               +C  C        
Sbjct: 11  FSTHDGDGIRT---TVF--FKGCPLSCVWCQNPEGISLRRRPLYFKNRCIHCKMCVEESV 65

Query: 51  --------DTDFVGIQGTKGGRYNVD--------------QLADLIEEQWITGEKEGRY- 87
                   D  F+ I   +   + ++               + +++EE            
Sbjct: 66  SGGMKFRGDKLFMNIDSPEDWEHLIELCPSGALAMDSREYSVKEVMEEIRKDMVFYRHDG 125

Query: 88  -CVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119
              L+GGEPL Q +  L  ++   K G   A+ET+
Sbjct: 126 GVTLSGGEPLHQSEFALEILKQCKKEGIHTAIETS 160


>gi|78043321|ref|YP_359656.1| molybdenum cofactor biosynthesis protein MoaA [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|123576645|sp|Q3ADX8|MOAA_CARHZ RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|77995436|gb|ABB14335.1| molybdenum cofactor biosynthesis protein MoaA [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 321

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 21/182 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       D+ +  C +C       + + G     +++ +++      G K+ R   +TG
Sbjct: 10  NYLRISVTDKCNLNCFYCK-PGNFQEFSPGDILTFEEILEVVRAFLPLGLKKVR---ITG 65

Query: 93  GEPLLQVDVP-LIQALNKR-GF-EIAVETNGTIEPPQGIDW-------ICVSPKAGCDLK 142
           GEPL++ ++  LI+ +    G  ++A+ TNG + P    D        +  S  +    K
Sbjct: 66  GEPLVRKNLLYLIENIAALPGIDDLALTTNGILFPRYARDLKSAGLSRVNFSLDSLNPDK 125

Query: 143 ---IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP-KW 198
              I GG ELK V   +N++ E  +     + +   + G  L+E     + + F+ P  W
Sbjct: 126 FRSITGGGELKNVLEAINLALE--LDLTPVKINTVLLRGINLDEIDAF-VDFIFRYPVHW 182

Query: 199 RL 200
           R 
Sbjct: 183 RF 184


>gi|155241762|gb|ABT18044.1| heme d1 biosynthesis protein [Heliobacillus mobilis]
          Length = 391

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 17/96 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C + D+D +   G         +    I+E     +      +L+
Sbjct: 47  CNLHC--------IHC-YSDSDEIDYPGE----LTTQEAIKFIDEL---ADFNVPVLLLS 90

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           GGEPL++ D+  L+   +KR   +   TNGT+  P 
Sbjct: 91  GGEPLMRPDIFELVAHASKRNVRVTFSTNGTLITPD 126


>gi|150400192|ref|YP_001323959.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanococcus vannielii SB]
 gi|150012895|gb|ABR55347.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanococcus vannielii SB]
          Length = 236

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 30/125 (24%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF   + CN++ G  Q+          T  +          +  ++ + ++  +      
Sbjct: 22  VF--LAECNMYCGYCQNYEFI------TKNIS-------EMSAKEVFESMDLMFADA--- 63

Query: 85  GRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSP 135
               V++GGEP LQ +    L +   ++ F + ++TNGT           + ID++ +  
Sbjct: 64  ---LVISGGEPTLQPEAVKELCKLAKEKNFPVKLDTNGTNPEVIKKLVSEKLIDYVALDV 120

Query: 136 KAGCD 140
           K   +
Sbjct: 121 KCSFE 125


>gi|118443556|ref|YP_878876.1| pyruvate formate-lyase [Clostridium novyi NT]
 gi|118134012|gb|ABK61056.1| pyruvate formate-lyase [Clostridium novyi NT]
          Length = 310

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118
           G   +V ++ D +++ ++   + G    L+GGEPL+Q      L++   + G   A+ET
Sbjct: 110 GEEKSVKEVIDNVKKDFVQFRRSGGGVTLSGGEPLMQPSFALNLLKGFKELGINTAIET 168


>gi|313893872|ref|ZP_07827438.1| pyruvate formate-lyase 1-activating enzyme [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313441436|gb|EFR59862.1| pyruvate formate-lyase 1-activating enzyme [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 258

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 28/114 (24%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEK 83
           VF    GC +           +C +C       + +   +   V++L D  E        
Sbjct: 23  VF--LQGCPM-----------RCAYCHNPDTWNEISDDAKFMTVEELWDQYERNRQFYTN 69

Query: 84  EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP 135
            G    +TGGE L+Q+D    L     +R     ++T+G          IC  P
Sbjct: 70  GG--ITVTGGEALMQIDFVTELFTYFRERNVHTCLDTSG----------ICFDP 111


>gi|222056745|ref|YP_002539107.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Geobacter sp. FRC-32]
 gi|221566034|gb|ACM22006.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Geobacter sp. FRC-32]
          Length = 332

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL              + DT             ++++  + ++E             +T
Sbjct: 38  CNLACSGCGRIRE----YADTIQ--------EMMSLEECLNSVDE------CPAPVVTVT 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEP L   +  LI  + KRG  I + TN  +   + +D +   P    ++ + G +E
Sbjct: 80  GGEPFLYPHIFDLIDGVLKRGKHIYLCTN-ALLLEKALDKMRPHPNFTLNVHMDGMEE 136


>gi|61214991|sp|Q6F9I9|PQQE_ACIAD RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
          Length = 386

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    D+  ++       + D+  D+  +    G  +  +  
Sbjct: 12  PLWLLAELTYRCPLQCAYCSNPLDYAAVK----QELSTDEWKDVFRQARAMGSVQLGF-- 65

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
            +GGEPLL Q    LI+  ++ GF   + T+G
Sbjct: 66  -SGGEPLLRQDLSELIKYAHELGFYTNLITSG 96


>gi|163790380|ref|ZP_02184811.1| pyruvate formate-lyase activating enzyme [Carnobacterium sp. AT7]
 gi|159874284|gb|EDP68357.1| pyruvate formate-lyase activating enzyme [Carnobacterium sp. AT7]
          Length = 253

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 41/133 (30%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +C FC   DT       
Sbjct: 12  TESFGSVDGPG---------IRFVTFMQGC-----------RMRCEFCHNPDT----WNM 47

Query: 60  TKGGRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIA 115
             G  Y  DQL A+ +  +   G K G    ++GGEPLL +D  LI+      ++G    
Sbjct: 48  GGGTPYTADQLLAEALSYREYWGSKGG--ITVSGGEPLLHIDF-LIEYFRKAKEQGVHTT 104

Query: 116 VETNG---TIEPP 125
           ++T G   T + P
Sbjct: 105 LDTCGQPFTYDEP 117


>gi|332044074|gb|EGI80269.1| Radical SAM domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 471

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 19/102 (18%)

Query: 46  QCRFCDTDFVGIQGTK-----GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           +C+FC   F   Q  K      G     +   ++E+    G ++       GGEPLL   
Sbjct: 195 RCKFC---FATFQDVKQTILPKGHLPESEALKVVEQIANAGFEK---ITFAGGEPLLCKW 248

Query: 101 VP-LIQALNKRGFEIAVETNGT-------IEPPQGIDWICVS 134
           +P LI+   + G    + TNG+        E    +DWI VS
Sbjct: 249 LPNLIKRAKQLGMTTMIVTNGSKLTDAFLKENTAYLDWIAVS 290


>gi|295104012|emb|CBL01556.1| pyruvate formate-lyase 1-activating enzyme [Faecalibacterium
           prausnitzii SL3/3]
          Length = 250

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 23/116 (19%)

Query: 8   EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
           E F ++ G G        VF    GC           + +C++C       +G  G  + 
Sbjct: 14  ESFGSVDGPGVRFV----VF--LQGC-----------ALRCKYCHNPETWAEG--GEAWT 54

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
            + L   +        K+G    ++GGEPL Q+D           +G   A++T G
Sbjct: 55  AEALFQRVYRYRNYWGKKGG-ITVSGGEPLRQMDFLTEFFTLARAKGVHTALDTAG 109


>gi|229166606|ref|ZP_04294358.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH621]
 gi|228616860|gb|EEK73933.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH621]
          Length = 338

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 73/177 (41%), Gaps = 33/177 (18%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  +  +  +     + D++  +       G ++ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGRD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVSPKAGCDLK 142
           GEPLL+ D+P LIQ LN+  G E I + TNG++      D        + VS  +  + +
Sbjct: 75  GEPLLRKDLPELIQRLNEIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVSLDSLNEER 134

Query: 143 IKGGQ----ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
                    ++K V   +  + E  +        +Q   G   E+   +A  Y  +N
Sbjct: 135 FSYLNGNRSKVKTVLAGIQAAAEAGMKIKM-NMVVQ--KGKNEEDIVQMA-EYFKEN 187


>gi|240145227|ref|ZP_04743828.1| molybdenum cofactor biosynthesis protein A [Roseburia intestinalis
           L1-82]
 gi|257202691|gb|EEV00976.1| molybdenum cofactor biosynthesis protein A [Roseburia intestinalis
           L1-82]
          Length = 345

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 17/161 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C++C    +          N+    ++++          R+  LTGGEPL++  
Sbjct: 18  DRCNLRCKYC----MPGDIETTDMENLLTYEEIVQVTETAAALGIRHIRLTGGEPLVRRG 73

Query: 101 -VPLIQALNK-RGFE-IAVETNGTIEP-------PQGIDWICVSPKAGCDL---KIKGGQ 147
            V L++ +    G E + + TNG +           G+D + VS     +    ++ G  
Sbjct: 74  CVDLVEKIKNVSGIETVGMTTNGVLLAEYAKALKEAGLDSVNVSLDTLDETEFQRLTGRD 133

Query: 148 ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
           EL  V   +N + E  I         Q +D   + + TN  
Sbjct: 134 ELNAVLAGINAAKEAQIPVKINTVHYQHLDWKSILDYTNRV 174


>gi|152988621|ref|YP_001346007.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa PA7]
 gi|150963779|gb|ABR85804.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa PA7]
          Length = 387

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 27/113 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         +      D+DF        G     ++   I++    G    R  +L+
Sbjct: 37  CNLTCKHCYSTSA------DSDF-------RGELETAEILRGIDDLRTAG---VRVLILS 80

Query: 92  GGEPLLQVDVPLIQALNKR--GFEIAVETNGTIEPPQGI--------DWICVS 134
           GGEPL+  D+  I A + R  G  +A+ +NGT+     I        D++ +S
Sbjct: 81  GGEPLMHPDLFEIAA-HARQAGMFVALSSNGTLIDEGNIQRVAEARFDYVGIS 132


>gi|84393746|ref|ZP_00992494.1| pyruvate formate-lyase 1 activating enzyme [Vibrio splendidus
           12B01]
 gi|84375608|gb|EAP92507.1| pyruvate formate-lyase 1 activating enzyme [Vibrio splendidus
           12B01]
          Length = 246

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C +C   DT         G    V+++ +  +      
Sbjct: 25  VF--LQGC-----------LMRCMYCHNRDT----WDLHDGKEVTVEEIINEAKSYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
           +  G     +GGE +LQ +      QA    G    ++TNG
Sbjct: 68  KASGGGITCSGGEAMLQPEFVRDFFQAAQAEGIHTCLDTNG 108


>gi|329926072|ref|ZP_08280683.1| radical SAM domain protein [Paenibacillus sp. HGF5]
 gi|328939470|gb|EGG35823.1| radical SAM domain protein [Paenibacillus sp. HGF5]
          Length = 333

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 20/92 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC          K     V+  A  ++E          +    
Sbjct: 57  CNL-----------ACTFC-----PPTERKANFIKVEDFARRLDEIKPHTSYIYLHVK-- 98

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
            GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 99  -GEPLLHPKIDELLDISHEKGFKVNITTNGTL 129


>gi|258539630|ref|YP_003174129.1| pyruvate formate-lyase activating enzyme [Lactobacillus rhamnosus
           Lc 705]
 gi|257151306|emb|CAR90278.1| Pyruvate formate-lyase activating enzyme [Lactobacillus rhamnosus
           Lc 705]
          Length = 267

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 37/131 (28%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +C++C   DT  +G+  
Sbjct: 16  VESFGSVDGPG---------IRFVVFMQGC-----------RMRCQYCHNPDTWNIGV-- 53

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117
             G     DQ+    +       ++G     +GGE L+Q+D  + L     + G    ++
Sbjct: 54  --GEEMTADQILADAQRYKAFWGEQGG-ITCSGGESLVQIDFILELFTKAKELGISTCLD 110

Query: 118 TNG---TIEPP 125
           T+G   T + P
Sbjct: 111 TSGGPFTRDQP 121


>gi|15597185|ref|NP_250679.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           aeruginosa PAO1]
 gi|116049940|ref|YP_791250.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|218892053|ref|YP_002440920.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           aeruginosa LESB58]
 gi|254235073|ref|ZP_04928396.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas
           aeruginosa C3719]
 gi|254240426|ref|ZP_04933748.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas
           aeruginosa 2192]
 gi|32363413|sp|Q9I2C0|PQQE_PSEAE RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|122259054|sp|Q02LD6|PQQE_PSEAB RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|226704996|sp|B7VAB6|PQQE_PSEA8 RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|9947990|gb|AAG05377.1|AE004625_7 pyrroloquinoline quinone biosynthesis protein E [Pseudomonas
           aeruginosa PAO1]
 gi|115585161|gb|ABJ11176.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126167004|gb|EAZ52515.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas
           aeruginosa C3719]
 gi|126193804|gb|EAZ57867.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas
           aeruginosa 2192]
 gi|218772279|emb|CAW28061.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas
           aeruginosa LESB58]
          Length = 381

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 15/112 (13%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C          +G   +  +  ++  +    G  +  +   +
Sbjct: 15  PLWLLAELTYRCPLQCPYCSNPLEF--AREGAELSTAEWIEVFRQARELGAAQLGF---S 69

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134
           GGEPLL Q    LI+A    GF   + T+G              G+D + +S
Sbjct: 70  GGEPLLRQDLAELIEAGRGLGFYTNLITSGIGLDEARLARFAEAGLDHVQIS 121


>gi|325845712|ref|ZP_08168995.1| molybdenum cofactor biosynthesis protein A [Turicibacter sp. HGF1]
 gi|325488313|gb|EGC90739.1| molybdenum cofactor biosynthesis protein A [Turicibacter sp. HGF1]
          Length = 323

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 17/94 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C  D +     K  +   D++  ++      G K+ R   LT
Sbjct: 20  CNL-----------RCVYCMEDTIQEFLPKCSKLTDDEMIRIVTACARLGIKKIR---LT 65

Query: 92  GGEPLLQVDV-PLIQALNKR-GF-EIAVETNGTI 122
           GGEPL++  +  LI+ ++   G  EI + TNGT+
Sbjct: 66  GGEPLVRPGIVELIKRIHDIDGIEEIYLTTNGTV 99


>gi|49088778|gb|AAT51605.1| PA1989 [synthetic construct]
          Length = 382

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 15/112 (13%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C          +G   +  +  ++  +    G  +  +   +
Sbjct: 15  PLWLLAELTYRCPLQCPYCSNPLEF--AREGAELSTAEWIEVFRQARELGAAQLGF---S 69

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134
           GGEPLL Q    LI+A    GF   + T+G              G+D + +S
Sbjct: 70  GGEPLLRQDLAELIEAGRGLGFYTNLITSGIGLDEARLARFAEAGLDHVQIS 121


>gi|261404960|ref|YP_003241201.1| Radical SAM domain-containing protein [Paenibacillus sp. Y412MC10]
 gi|261281423|gb|ACX63394.1| Radical SAM domain protein [Paenibacillus sp. Y412MC10]
          Length = 291

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 20/92 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC          K     V+  A  ++E          +    
Sbjct: 15  CNL-----------ACTFC-----PPTERKANFIKVEDFARRLDEIKPHTSYIYLHVK-- 56

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
            GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 57  -GEPLLHPKIDELLDISHEKGFKVNITTNGTL 87


>gi|328952147|ref|YP_004369481.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452471|gb|AEB08300.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Desulfobacca acetoxidans DSM 11109]
          Length = 332

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 40/115 (34%), Gaps = 20/115 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL                       QGT      + +    +EE             +T
Sbjct: 38  CNLSCLGCGRIQE------------YQGTLNQMMTLQECLAAVEECG------APVVTVT 79

Query: 92  GGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
           GGEPL+    V LIQ L  R   I + TNG +   + +  +  SP+    + + G
Sbjct: 80  GGEPLVYPPVVELIQELLHRRKHIYLCTNG-LLLGKVLPRLTPSPRLTLSVHLDG 133


>gi|331002131|ref|ZP_08325650.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae oral
           taxon 107 str. F0167]
 gi|330411225|gb|EGG90641.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae oral
           taxon 107 str. F0167]
          Length = 242

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 21/100 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF    GC +           +C+FC                V    ++ E+        
Sbjct: 25  VFV--QGCPM-----------RCQFC----HNPDTWSTNENQVLTAQEVFEKAIRYRPYW 67

Query: 85  GRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
             +    ++GGEPLLQ+D    L +   + G    ++T G
Sbjct: 68  KDHGGITVSGGEPLLQIDFVTELFKICKENGVNTCLDTAG 107


>gi|199599261|ref|ZP_03212662.1| Pyruvate-formate lyase-activating enzyme [Lactobacillus rhamnosus
           HN001]
 gi|229552219|ref|ZP_04440944.1| [formate-C-acetyltransferase]-activating enzyme [Lactobacillus
           rhamnosus LMS2-1]
 gi|258508417|ref|YP_003171168.1| pyruvate formate-lyase activating enzyme [Lactobacillus rhamnosus
           GG]
 gi|199589873|gb|EDY97978.1| Pyruvate-formate lyase-activating enzyme [Lactobacillus rhamnosus
           HN001]
 gi|229314405|gb|EEN80378.1| [formate-C-acetyltransferase]-activating enzyme [Lactobacillus
           rhamnosus LMS2-1]
 gi|257148344|emb|CAR87317.1| Pyruvate formate-lyase activating enzyme [Lactobacillus rhamnosus
           GG]
 gi|259649731|dbj|BAI41893.1| formate acetyltransferase activating enzyme [Lactobacillus
           rhamnosus GG]
          Length = 283

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 37/131 (28%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +C++C   DT  +G+  
Sbjct: 32  VESFGSVDGPG---------IRFVVFMQGC-----------RMRCQYCHNPDTWNIGV-- 69

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117
             G     DQ+    +       ++G     +GGE L+Q+D  + L     + G    ++
Sbjct: 70  --GEEMTADQILADAQRYKAFWGEQGG-ITCSGGESLVQIDFILELFTKAKELGISTCLD 126

Query: 118 TNG---TIEPP 125
           T+G   T + P
Sbjct: 127 TSGGPFTRDQP 137


>gi|149927643|ref|ZP_01915896.1| pyrroloquinoline quinone biosynthesis protein PqqE [Limnobacter sp.
           MED105]
 gi|149823697|gb|EDM82925.1| pyrroloquinoline quinone biosynthesis protein PqqE [Limnobacter sp.
           MED105]
          Length = 398

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 9/100 (9%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
            LW   E   R    C FC   +  +   +     +  +  + +++    G  +  +   
Sbjct: 14  PLWLLAELTYRCPLHCVFC---YNPVDYKSNTNELSTAEWKETMKQARALGAVQLGF--- 67

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGID 129
           +GGEPLL+ D+  L+   ++ G+   + T+G    P  +D
Sbjct: 68  SGGEPLLRDDLEELVAYGHELGYYTNLITSGIGLKPTRLD 107


>gi|84622616|ref|YP_449988.1| molybdenum cofactor biosynthesis protein A [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84366556|dbj|BAE67714.1| molybdenum cofactor biosynthesis protein A [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 343

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 20/137 (14%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
           +C +C   D            R + DQL  L+      G  + R   LTGGEPLL+ D+P
Sbjct: 36  RCGYCMPADRVPDDYGFDSRQRLSFDQLETLVRAFVSVGVTKVR---LTGGEPLLRRDLP 92

Query: 103 -LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVSPKAGCDLKIKGGQ----E 148
            LI  L    G E +A+ TNGT+   Q +         I VS  A      +       E
Sbjct: 93  SLIARLTAIEGIEDLALTTNGTLLARQAVALRQAGLRRITVSMDALEPALFRRMNGDRGE 152

Query: 149 LKLVFPQVNVSPENYIG 165
           +  V P +  + +    
Sbjct: 153 IARVLPVIAAAEQAVFQ 169


>gi|189500137|ref|YP_001959607.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Chlorobium phaeobacteroides BS1]
 gi|189495578|gb|ACE04126.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Chlorobium phaeobacteroides BS1]
          Length = 255

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 35/124 (28%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI-----EEQWITGEKEG 85
           GCN            +C +C                 ++LA+ +     E          
Sbjct: 49  GCNF-----------RCVYC---------HNPELVVSERLAETVPLVNEELFAWLSLNRA 88

Query: 86  RY--CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-------PQGIDWICVSP 135
                V+TGGEP +   +P  I+ +     ++ ++TNGT           + +D++ +  
Sbjct: 89  LLDAVVITGGEPTMHAVLPEFIRRIKTLELDVKIDTNGTNPAMLEGLIDDELVDYVALDI 148

Query: 136 KAGC 139
           KA  
Sbjct: 149 KAPL 152


>gi|71282516|ref|YP_270877.1| putative heme biosynthesis protein [Colwellia psychrerythraea 34H]
 gi|71148256|gb|AAZ28729.1| putative heme biosynthesis protein [Colwellia psychrerythraea 34H]
          Length = 410

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL                D DF           + +Q+   I++  +         +L+
Sbjct: 40  CNLQCKHCYSTSL------DIDF-------KDELSTEQVKTTIDDLKVA---HVPVLILS 83

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D+  + +   ++GF +A+ TNGT+
Sbjct: 84  GGEPLLRPDIYEITEYAKQKGFYLALSTNGTL 115


>gi|319791401|ref|YP_004153041.1| coenzyme pqq biosynthesis protein e [Variovorax paradoxus EPS]
 gi|315593864|gb|ADU34930.1| coenzyme PQQ biosynthesis protein E [Variovorax paradoxus EPS]
          Length = 393

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 19/114 (16%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R    C FC    D+             D+   +  E    G  +  +  
Sbjct: 22  PLWLLAELTYRCPLHCAFCSNPVDYTRYDSE----LTTDEWIRVFREARAMGAVQLGF-- 75

Query: 90  LTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT-IEPP-------QGIDWICVS 134
            +GGEPL++ D+  L+ A +  GF   + T+G  + PP        G+D I +S
Sbjct: 76  -SGGEPLVRDDLAELVAAAHDLGFYTNLITSGVGLTPPRAEALKKAGLDHIQLS 128


>gi|262274659|ref|ZP_06052470.1| pyruvate formate-lyase activating enzyme [Grimontia hollisae CIP
           101886]
 gi|262221222|gb|EEY72536.1| pyruvate formate-lyase activating enzyme [Grimontia hollisae CIP
           101886]
          Length = 246

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 53/162 (32%), Gaps = 37/162 (22%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G    V+++   +     
Sbjct: 21  IRFIVFMQGC-----------LMRCKYCHNRDT----WDLHDGREVTVEEIMKEVVTYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWIC 132
                G     +GGE +LQ +      +A    G    ++TNG     T    + +D   
Sbjct: 66  FINASGGGVTASGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYIRKHTDVIDEVLD--- 122

Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
                  DL +   ++L     +  V   N+   DF R+  Q
Sbjct: 123 -----ATDLVMLDLKQLNDDIHKDLVGVSNHRTLDFARYLHQ 159


>gi|153811927|ref|ZP_01964595.1| hypothetical protein RUMOBE_02320 [Ruminococcus obeum ATCC 29174]
 gi|149832061|gb|EDM87146.1| hypothetical protein RUMOBE_02320 [Ruminococcus obeum ATCC 29174]
          Length = 245

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 26/117 (22%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
           E F ++ G G    R  +F   SGC           + +C+FC   DT     +  +G +
Sbjct: 13  ESFGSVDGPGV---RYVIF--LSGC-----------AMRCQFCHNPDT----WKMGEGQQ 52

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
           Y   QL             +G    ++GGEPLLQ+D    L +     G    ++T+
Sbjct: 53  YTPSQLLKQALRYKNYWGNKGG-ITVSGGEPLLQIDFLTELFRQAKAAGVHTTLDTS 108


>gi|307353972|ref|YP_003895023.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
           DSM 11571]
 gi|307157205|gb|ADN36585.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 362

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 38  REQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           R  D  +A+C  C   F      +G    ++   D +       +       LTGGEP L
Sbjct: 32  RITDICNARCVHC---FTSADN-QGETMTLEDFQDFV--VPRLKQCRVSRVTLTGGEPFL 85

Query: 98  QVD-VPLIQALNKRGFEIAVETNGTIEPPQGI 128
             + +  ++ L+     + + TN T+     I
Sbjct: 86  HPNIIDFVKLLSNADISVGICTNATVITTDQI 117


>gi|261838000|gb|ACX97766.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori 51]
          Length = 319

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 57/170 (33%), Gaps = 27/170 (15%)

Query: 47  CRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPL 103
           C++C   T              +D + + ++     G K+ R   +TGGEPLL+      
Sbjct: 25  CQYCMPTTPLNFFDDE--ELLPLDNVLEFLKIAIDEGIKKIR---ITGGEPLLRKGLDEF 79

Query: 104 IQALNKRGFEIA--VETNGTIEPPQGID-------WICVS-PKAGCDLKIKGGQELKLVF 153
           I  L+    E+A  + TNG +      D        + VS       LKI     LK   
Sbjct: 80  IAKLHAYNKEVALVLSTNGFLLKKMAKDLKNAGLSQVNVSLDSLKRVLKISQKDALKNTL 139

Query: 154 PQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQ 203
             +  S +  +           M     +E   L + Y         S+Q
Sbjct: 140 EGIEESLKAGLKLKLNTVV---MKSVNDDEILEL-LEYAKNR-----SIQ 180


>gi|154495914|ref|ZP_02034610.1| hypothetical protein BACCAP_00194 [Bacteroides capillosus ATCC
           29799]
 gi|150274797|gb|EDN01853.1| hypothetical protein BACCAP_00194 [Bacteroides capillosus ATCC
           29799]
          Length = 376

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 13/92 (14%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN          +A+          I  +       DQ  D+  +    G     + +LT
Sbjct: 41  CNFNCKMCYVHQTAE---------QIAASGRKELTADQWLDIARQAKDAGMV---FLLLT 88

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           GGEPL   + P L+  L + G  ++V +NG++
Sbjct: 89  GGEPLTFPEFPRLLHELKQLGLLVSVNSNGSL 120


>gi|116696219|ref|YP_841795.1| heme d1 biosynthesis protein (NirJ) [Ralstonia eutropha H16]
 gi|113530718|emb|CAJ97065.1| heme d1 biosynthesis protein (NirJ) [Ralstonia eutropha H16]
          Length = 387

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 24/116 (20%)

Query: 33  NLWSGREQDRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
            +       R +  CR C     DTDF G   T      +DQL D               
Sbjct: 26  PVVIWNLIRRCNLNCRHCYATSADTDFKGELDTAEALRVLDQLRDA----------RVPA 75

Query: 88  CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI--------EPPQGIDWICVS 134
            +L+GGEPLL+ D+  +       GF +++ +NGT+            G D++ VS
Sbjct: 76  LILSGGEPLLRPDLYEIAARARALGFHLSLSSNGTLLDAGHAARLAAAGFDYVGVS 131


>gi|85858425|ref|YP_460627.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB]
 gi|85721516|gb|ABC76459.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB]
          Length = 369

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR         +G   G  + ++  +L+EE            +LT
Sbjct: 21  CNLSC--------IHCR-----ASAEKGPYAGELSTEESKNLLEE---IAAFSRPVVILT 64

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D+  L    +  G  + + TNGT+
Sbjct: 65  GGEPLLREDIYELAAYGDGLGLRMVLATNGTL 96


>gi|107101417|ref|ZP_01365335.1| hypothetical protein PaerPA_01002457 [Pseudomonas aeruginosa PACS2]
 gi|313111199|ref|ZP_07797021.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas
           aeruginosa 39016]
 gi|310883523|gb|EFQ42117.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas
           aeruginosa 39016]
          Length = 370

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 15/112 (13%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C          +G   +  +  ++  +    G  +  +   +
Sbjct: 4   PLWLLAELTYRCPLQCPYCSNPLEF--AREGAELSTAEWIEVFRQARELGAAQLGF---S 58

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134
           GGEPLL Q    LI+A    GF   + T+G              G+D + +S
Sbjct: 59  GGEPLLRQDLAELIEAGRGLGFYTNLITSGIGLDEARLARFAEAGLDHVQIS 110


>gi|33595784|ref|NP_883427.1| molybdenum cofactor biosynthesis protein A [Bordetella
           parapertussis 12822]
 gi|33565863|emb|CAE36410.1| molybdenum cofactor biosynthesis protein [Bordetella parapertussis]
          Length = 365

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 25/114 (21%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D+ +  +  +     + +++A L  +    G ++ R   LTGGE
Sbjct: 46  DRCNFRCTYCMPREVFDSSYAFMPHS--ALLSFEEIARLAAQFARLGVEKIR---LTGGE 100

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEPP-------QGIDWICVS 134
           PLL+ ++  L+  L +      R  ++ + TNG++           G+  + VS
Sbjct: 101 PLLRKNIETLVGMLAELRTPAGRPLDLTLTTNGSLLARKAAALKQAGLSRVTVS 154


>gi|33600311|ref|NP_887871.1| molybdenum cofactor biosynthesis protein A [Bordetella
           bronchiseptica RB50]
 gi|33567910|emb|CAE31823.1| molybdenum cofactor biosynthesis protein [Bordetella bronchiseptica
           RB50]
          Length = 365

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 25/114 (21%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D+ +  +  +     + +++A L  +    G ++ R   LTGGE
Sbjct: 46  DRCNFRCTYCMPREVFDSSYAFMPHS--ALLSFEEIARLAAQFARLGVEKIR---LTGGE 100

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEPP-------QGIDWICVS 134
           PLL+ ++  L+  L +      R  ++ + TNG++           G+  + VS
Sbjct: 101 PLLRKNIETLVGMLAELRTPAGRPLDLTLTTNGSLLARKAAALKQAGLSRVTVS 154


>gi|294634565|ref|ZP_06713100.1| putative pyruvate formate-lyase 3-activating enzyme [Edwardsiella
           tarda ATCC 23685]
 gi|291092079|gb|EFE24640.1| putative pyruvate formate-lyase 3-activating enzyme [Edwardsiella
           tarda ATCC 23685]
          Length = 323

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118
           G   + + +   IE      ++ G    L+GGEP +Q  +   L++   + G   AVET
Sbjct: 125 GEEISAETILSQIERDRPFYQRSGGGITLSGGEPFMQPRLAETLLRRCYQAGIHTAVET 183


>gi|325522592|gb|EGD01129.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. TJI49]
          Length = 263

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 24/117 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN   G    R S        D+  +  +   R +  QL  +       G ++ R   +T
Sbjct: 52  CNFRCGYCMPRASFGA-----DYAFMPSS--ERLSFAQLEKIARAFTSLGVEKFR---IT 101

Query: 92  GGEPLLQVDVP-LIQALN------KRGFEIAVETNGTIEP-------PQGIDWICVS 134
           GGEPLL+  +  LI+ L        R  EIA+ TNG++           G+  + VS
Sbjct: 102 GGEPLLRRHLERLIERLATLTTVDGRPVEIALTTNGSLLADKARTLRDAGLSRVTVS 158


>gi|315604652|ref|ZP_07879715.1| pyruvate formate-lyase activating enzyme [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315313664|gb|EFU61718.1| pyruvate formate-lyase activating enzyme [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 292

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 28/135 (20%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   +GC L           +C +C   DT F+   G      +  +L   I    
Sbjct: 68  RMTVF--LNGCPL-----------RCLYCHNPDT-FLMKDGAP---VSDTELLSRIARYR 110

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTI------EPPQGIDW 130
                      L+GGE L+Q      +I    + G    ++T+G +      E    ID 
Sbjct: 111 RIFRTTKGGITLSGGEVLMQPHFAKRIILGAKEMGVHTCIDTSGYLGANCDDEMLDAIDL 170

Query: 131 ICVSPKAGCDLKIKG 145
           + +  K+G +   K 
Sbjct: 171 VLLDVKSGNEETYKR 185


>gi|296389601|ref|ZP_06879076.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           aeruginosa PAb1]
          Length = 370

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 15/112 (13%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C          +G   +  +  ++  +    G  +  +   +
Sbjct: 4   PLWLLAELTYRCPLQCPYCSNPLEF--AREGAELSTAEWIEVFRQARELGAAQLGF---S 58

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134
           GGEPLL Q    LI+A    GF   + T+G              G+D + +S
Sbjct: 59  GGEPLLRQDLAELIEAGRGLGFYTNLITSGIGLDEARLARFAEAGLDHVQIS 110


>gi|218283332|ref|ZP_03489380.1| hypothetical protein EUBIFOR_01969 [Eubacterium biforme DSM 3989]
 gi|218215924|gb|EEC89462.1| hypothetical protein EUBIFOR_01969 [Eubacterium biforme DSM 3989]
          Length = 313

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 8/78 (10%)

Query: 45  AQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVD--V 101
           A C  C T  + +       Y V++ + ++++++     + G     +GGEP LQ D  +
Sbjct: 99  AICDVCPTLALSMDA---KEYTVEKCVHEILKDEIFFKREGG--VTFSGGEPFLQSDFLM 153

Query: 102 PLIQALNKRGFEIAVETN 119
            L++A  ++G   A+ET+
Sbjct: 154 DLLKACKEKGIHTAIETS 171


>gi|300698169|ref|YP_003748830.1| ribonucleotide reductase activating transmembrane protein (nrdG)
           [Ralstonia solanacearum CFBP2957]
 gi|299074893|emb|CBJ54462.1| putative ribonucleotide reductase activating transmembrane protein
           (nrdG) [Ralstonia solanacearum CFBP2957]
          Length = 244

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 28/128 (21%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G++A  VF   +GC             +C +C          +    +  Q+   ++ + 
Sbjct: 42  GQLAAVVFI--AGCP-----------WRCHYC---HNPHLQARERHLHWTQVMAFLQSRR 85

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
              +      V +GGEPL +  +P LI A+   GF+  + T G            +DW+ 
Sbjct: 86  TLLDA----VVFSGGEPLSEPRLPELIAAVRALGFKAGLHTAGIYPARLAAVLPMLDWVG 141

Query: 133 VSPKAGCD 140
           +  K    
Sbjct: 142 LDIKTTAS 149


>gi|282165058|ref|YP_003357443.1| hypothetical protein MCP_2388 [Methanocella paludicola SANAE]
 gi|282157372|dbj|BAI62460.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 398

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 18/99 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C               +  +   LI+      + +  Y ++T
Sbjct: 69  CNL-----------RCLHC---VTSSGSKDNDELDSQEAFALIDRL---ADMKVFYLIIT 111

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGID 129
           GGEP L+ D + L++ ++ +   + V+TNGT+     +D
Sbjct: 112 GGEPFLRPDILELLRHISTKNMMVKVDTNGTLIDDDAVD 150


>gi|28210648|ref|NP_781592.1| benzylsuccinate synthase activating enzyme [Clostridium tetani E88]
 gi|28203086|gb|AAO35529.1| pyruvate formate-lyase [Clostridium tetani E88]
          Length = 310

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           G    V+++   +++  I          L+GGEPL+Q++  + L++A    G+  A+ET
Sbjct: 110 GEEMTVEEVVKELKKDAIHFRNSNGGITLSGGEPLMQLEFTLELLKACKTMGWHTAMET 168


>gi|320354841|ref|YP_004196180.1| Radical SAM domain-containing protein [Desulfobulbus propionicus
           DSM 2032]
 gi|320123343|gb|ADW18889.1| Radical SAM domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 293

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 20/92 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC            G   V   A+++            + +  
Sbjct: 15  CNL-----------ACPFC-----ARSDRAKGTMAVTAFAEVLHRLAGATRYLYLHVL-- 56

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            GEPLL      L+    ++GF + + TNGT+
Sbjct: 57  -GEPLLHPHFDRLLALCQEQGFRVNLTTNGTL 87


>gi|294794866|ref|ZP_06760001.1| pyruvate formate-lyase 1-activating enzyme [Veillonella sp. 3_1_44]
 gi|294454228|gb|EFG22602.1| pyruvate formate-lyase 1-activating enzyme [Veillonella sp. 3_1_44]
          Length = 258

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 28/114 (24%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEK 83
           VF    GC +           +C +C       + +   +   V +L D  E        
Sbjct: 23  VF--LQGCPM-----------RCAYCHNPDTWDETSDNAKFMTVKELWDQYERNRQFYTN 69

Query: 84  EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP 135
            G    +TGGE L+Q+D  + L     +R     ++T+G          IC  P
Sbjct: 70  GG--ITVTGGEALMQIDFVIELFTYFRERNVHTCLDTSG----------ICFDP 111


>gi|119897481|ref|YP_932694.1| pyrroloquinoline quinone biosynthesis protein PqqE [Azoarcus sp.
           BH72]
 gi|119669894|emb|CAL93807.1| pyrroloquinoline quinone synthesis protein E [Azoarcus sp. BH72]
          Length = 384

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R    C FC    DF           + +    ++ E    G  +   C 
Sbjct: 16  PLWLLAEVTYRCPLHCAFCYNPVDFARDDTE----LSTEDWLRVLREARAAGSVQ---CG 68

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +GGEPL++ D+  L+   ++ G+   + T+G
Sbjct: 69  FSGGEPLMRDDLEVLVAEAHRLGYYTNLLTSG 100


>gi|164688694|ref|ZP_02212722.1| hypothetical protein CLOBAR_02340 [Clostridium bartlettii DSM
           16795]
 gi|164602170|gb|EDQ95635.1| hypothetical protein CLOBAR_02340 [Clostridium bartlettii DSM
           16795]
          Length = 380

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 47  CRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104
           C+ C       +  K GR   V++   + EE    G     + ++TGGEPLL      L 
Sbjct: 39  CKMCYVKMTKSEVDKVGRLRTVEEWISIAEEAKDAGM---LFLLITGGEPLLYKGFKELY 95

Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWI 131
             L K G  I++ TN T+   +  D+ 
Sbjct: 96  LKLVKMGLIISINTNATLIDEEMADFF 122


>gi|317014178|gb|ADU81614.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           Gambia94/24]
          Length = 321

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 26/166 (15%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLLQV-DV 101
           +C++C      +  T    ++ ++L    + +E   I  ++  +   +TGGEPLL+    
Sbjct: 24  RCQYC------MPTTPLDFFDDEELLPLDNALEFLKIAIDEGVKKIRITGGEPLLRKGLD 77

Query: 102 PLIQALNKRGFEIA--VETNGTI-------EPPQGIDWICV---SPKAGCDLKIKGGQEL 149
             I  L+    E+A  + TNG +           G+  + V   S K+   LKI     L
Sbjct: 78  EFIAKLHAYNKEVALVLSTNGFLLKKMAKGLKDAGLSRVNVSLDSLKSDRVLKISQKDAL 137

Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
           K     +  S +  +           M G   +E   L + Y    
Sbjct: 138 KNALEGIEESLKVGLKLKLNTVV---MKGVNDDEILEL-LEYAKNR 179


>gi|291534464|emb|CBL07576.1| molybdenum cofactor biosynthesis protein A, bacterial [Roseburia
           intestinalis M50/1]
          Length = 345

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 23/164 (14%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR + +C++C   D +   ++         +++  + E     G    R+  LTGGEPL+
Sbjct: 18  DRCNLRCKYCMPGDIETTDME----NLLTYEEIVQVTEAAAALG---IRHIRLTGGEPLV 70

Query: 98  QVD-VPLIQALNK-RGFE-IAVETNGTIEP-------PQGIDWICVSPKAGCDL---KIK 144
           +   V L++ +    G E + + TNG +            +D + VS     +    ++ 
Sbjct: 71  RRGCVDLVEKIKNVSGIETVGMTTNGVLLAEYAKALKEAELDSVNVSLDTLDETEFQRLT 130

Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
           G  EL  V   +N + E  I         Q +D   + + TN  
Sbjct: 131 GRDELNAVLAGINAAKEAQIPVKINTVHYQHLDWKSILDYTNRV 174


>gi|269797319|ref|YP_003311219.1| pyruvate formate-lyase activating enzyme [Veillonella parvula DSM
           2008]
 gi|282849279|ref|ZP_06258664.1| pyruvate formate-lyase 1-activating enzyme [Veillonella parvula
           ATCC 17745]
 gi|269093948|gb|ACZ23939.1| pyruvate formate-lyase activating enzyme [Veillonella parvula DSM
           2008]
 gi|282580983|gb|EFB86381.1| pyruvate formate-lyase 1-activating enzyme [Veillonella parvula
           ATCC 17745]
          Length = 258

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 28/114 (24%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEK 83
           VF    GC +           +C +C       + +   +   V +L D  E        
Sbjct: 23  VF--LQGCPM-----------RCAYCHNPDTWDETSDNAKFMTVKELWDQYERNRQFYTN 69

Query: 84  EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP 135
            G    +TGGE L+Q+D  + L     +R     ++T+G          IC  P
Sbjct: 70  GG--ITVTGGEALMQIDFVIELFTYFRERNVHTCLDTSG----------ICFDP 111


>gi|6580770|gb|AAF18276.1| pyruvate formate lyase activating enzyme [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 270

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 22/129 (17%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            RF  C +  G     L   C++C                   LA+++EE     +   R
Sbjct: 48  VRF--CAVLGG-----LRFACQYC----HNPDSWFLKNGRAVTLAEMMEEVASYADFLKR 96

Query: 87  Y---CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI------EPPQGIDWICVSP 135
                 ++GGEPL+Q +    L++A    G   A++T G +            D + +  
Sbjct: 97  AGGGITISGGEPLVQPEFTGALLKAAKYLGLHTAIDTAGFLGAQADDALLSNTDLVLLDI 156

Query: 136 KAGCDLKIK 144
           KA  D + K
Sbjct: 157 KAFNDKRYK 165


>gi|323701817|ref|ZP_08113487.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
 gi|323533121|gb|EGB22990.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
          Length = 389

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 18/96 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR C   +      K    + ++    I++     E +    + +
Sbjct: 47  CNL-----------KCRHC---YSESDSKKYNELSTEEAKRFIDDL---AEFKVPVLLFS 89

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           GGEPL++ D   L+    ++G    + TNGT+  PQ
Sbjct: 90  GGEPLVRPDFFELVAYAGEKGIRTTISTNGTLITPQ 125


>gi|319935709|ref|ZP_08010140.1| glycyl-radical enzyme activating protein [Coprobacillus sp. 29_1]
 gi|319809367|gb|EFW05802.1| glycyl-radical enzyme activating protein [Coprobacillus sp. 29_1]
          Length = 312

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 48  RFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQ 105
           ++C T  +         Y++++L   I++  +   +EG     +GGEP +Q D  + +++
Sbjct: 101 KYCPTGAIRYDS---ELYDIEELMIKIKQDEVFFREEGG-VTFSGGEPFMQGDFLIEILK 156

Query: 106 ALNKRGFEIAVETN 119
             ++ G   A+ET+
Sbjct: 157 RCHEEGIHTAIETS 170


>gi|320103820|ref|YP_004179411.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Isosphaera pallida ATCC 43644]
 gi|319751102|gb|ADV62862.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Isosphaera pallida ATCC 43644]
          Length = 337

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 21/141 (14%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL                         T   + ++D+    ++E             + 
Sbjct: 42  CNLTCTGCGRIRE------------YASTIKEKLSIDECLAAVDECG------APVVSIC 83

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE-L 149
           GGEP++   +  L   + +RG  + + TNG +   + ID    SP+   ++ + G +E  
Sbjct: 84  GGEPMIYPGIDQLTAKILERGKCVYLCTNG-MFIRKHIDKFKPSPRFFFNVHLDGMRESH 142

Query: 150 KLVFPQVNVSPENYIGFDFER 170
            L   +  V  +   G    +
Sbjct: 143 DLAVERQGVFDKAIDGIKAAK 163


>gi|294793098|ref|ZP_06758244.1| pyruvate formate-lyase 1-activating enzyme [Veillonella sp. 6_1_27]
 gi|294456043|gb|EFG24407.1| pyruvate formate-lyase 1-activating enzyme [Veillonella sp. 6_1_27]
          Length = 258

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 28/114 (24%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEK 83
           VF    GC +           +C +C       + +   +   V +L D  E        
Sbjct: 23  VF--LQGCPM-----------RCAYCHNPDTWDETSDNAKFMTVKELWDQYERNRQFYTN 69

Query: 84  EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP 135
            G    +TGGE L+Q+D  + L     +R     ++T+G          IC  P
Sbjct: 70  GG--ITVTGGEALMQIDFVIELFTYFRERNVHTCLDTSG----------ICFDP 111


>gi|328951851|ref|YP_004369185.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452175|gb|AEB08004.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 337

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 19/98 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C F D+      G  G    +D++  ++ E    G  +    + T
Sbjct: 16  CNLNC--------LHC-FADS------GVAGYEMTMDEIRKVLRELRELGVFQ---VLFT 57

Query: 92  GGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEPPQGI 128
           GGEP        +++      F + +ETNGT+   + I
Sbjct: 58  GGEPFCRNDFFEVMEDAEAMDFAMVIETNGTLLDEERI 95


>gi|300817404|ref|ZP_07097621.1| radical SAM domain protein [Escherichia coli MS 107-1]
 gi|300530030|gb|EFK51092.1| radical SAM domain protein [Escherichia coli MS 107-1]
          Length = 372

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 14/98 (14%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A   + D  +     T      ++++ + I E  +  E      VL 
Sbjct: 13  CNLDCTYCYVYRGADTSWQDQPYRMNDAT------IEKVVERITEYSLLQETGFA-IVLH 65

Query: 92  GGEPLL---QVDVPLIQALNK----RGFEIAVETNGTI 122
           GGEPLL   +    L+  L +    + + I+++TNG +
Sbjct: 66  GGEPLLLGERRLESLLSGLRRVLNPQKYPISIQTNGVL 103


>gi|157146525|ref|YP_001453844.1| hypothetical protein CKO_02286 [Citrobacter koseri ATCC BAA-895]
 gi|157083730|gb|ABV13408.1| hypothetical protein CKO_02286 [Citrobacter koseri ATCC BAA-895]
          Length = 299

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           G    V+++ D +       ++ G    L+GGEP +Q ++   L +A +  G   AVET
Sbjct: 101 GETKRVEEIMDTVLRDKPFYDRSGGGITLSGGEPFMQPELAAALFKASHDAGIHTAVET 159


>gi|28378196|ref|NP_785088.1| molybdenum cofactor biosynthesis protein A [Lactobacillus plantarum
           WCFS1]
 gi|38258047|sp|Q88WY1|MOAA_LACPL RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|28271031|emb|CAD63936.1| molybdopterin precursor synthase MoaA [Lactobacillus plantarum
           WCFS1]
          Length = 332

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 36/164 (21%)

Query: 27  CRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGE 82
            R S    CNL           +C +C     G+      R  + D++  LIE     G 
Sbjct: 15  VRLSITDRCNL-----------RCVYC-MPKEGLPFFPTDRVLSQDEIVQLIENFAAMGV 62

Query: 83  KEGRYCVLTGGEPLLQVD-VPLIQALNK-RGF-EIAVETNGTIEP-------PQGIDWIC 132
            + R   +TGGEPLL+ D V +++ +    G  ++++ TNG             G+D + 
Sbjct: 63  SKVR---ITGGEPLLRTDVVEIVRRIKAVDGINDVSITTNGLFLAKLAKPLKEAGLDRLN 119

Query: 133 VS---PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
           +S    KA    KI  G  ++ V   + V+        F++  L
Sbjct: 120 ISLDTFKADRYKKITRGGNIQQVLDGIAVA----SKLHFKKIKL 159


>gi|299537483|ref|ZP_07050777.1| molybdenum cofactor biosynthesis protein A [Lysinibacillus
           fusiformis ZC1]
 gi|298727044|gb|EFI67625.1| molybdenum cofactor biosynthesis protein A [Lysinibacillus
           fusiformis ZC1]
          Length = 338

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 18/93 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  +  +   K    + D++  L++     G K+ R   +TG
Sbjct: 21  DRCNFRCRYCMPAEVFGPD--YAFLPSDK--ILSFDEIERLVKIFVSLGVKKIR---ITG 73

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTI 122
           GEPLL+ D+P LI  +++ +G E IA+ TNG++
Sbjct: 74  GEPLLRRDLPELIARIHRIKGVEDIALTTNGSL 106


>gi|71907332|ref|YP_284919.1| pyrroloquinoline quinone biosynthesis protein PqqE [Dechloromonas
           aromatica RCB]
 gi|71846953|gb|AAZ46449.1| Coenzyme PQQ biosynthesis protein E [Dechloromonas aromatica RCB]
          Length = 375

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
            LW   E   R    C FC   +  +     G     ++   +I +    G  +     +
Sbjct: 9   PLWLLAEVTYRCPLHCAFC---YNPVDFAAAGPELTTEEWLRVIRQARALGAAQFG---I 62

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           +GGEP+L+ D+  L+    + GF   + T+G
Sbjct: 63  SGGEPMLRDDIEILVAEARQLGFYTNLITSG 93


>gi|293401093|ref|ZP_06645237.1| pyruvate formate-lyase 1-activating enzyme [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305219|gb|EFE46464.1| pyruvate formate-lyase 1-activating enzyme [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 256

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 27/118 (22%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
           E F ++ G G    R  +F    GC             +C+FC   DT  +         
Sbjct: 17  ETFGSVDGPGV---RYVIF--LQGC-----------RMRCQFCHNADTWKIMEGSE---- 56

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
              + +            K      ++GGEPLLQ+D  + L +   ++G    ++T G
Sbjct: 57  -TAEDVLRKALRYKPY-WKHSGGITVSGGEPLLQIDFLLELFKLAKQKGVHTVIDTCG 112


>gi|330829141|ref|YP_004392093.1| pyruvate formate-lyase activating enzyme [Aeromonas veronii B565]
 gi|328804277|gb|AEB49476.1| Pyruvate formate-lyase activating enzyme [Aeromonas veronii B565]
          Length = 216

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 9/80 (11%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--D 100
           +C++C   DT         G    V +L   I          G     +GGE +LQ    
Sbjct: 2   RCKYCHNRDT----WDTEGGREVTVPELMSDITSYRHFMNASGGGVTASGGEAMLQPAFI 57

Query: 101 VPLIQALNKRGFEIAVETNG 120
             L  A  ++G    ++TNG
Sbjct: 58  TELFTACKEKGIHTCLDTNG 77


>gi|304406179|ref|ZP_07387836.1| Radical SAM domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304344763|gb|EFM10600.1| Radical SAM domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 292

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 29/118 (24%)

Query: 32  CNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C FC  T+         G   +D    ++++          +   
Sbjct: 15  CNL-----------ACTFCPQTERA------KGFIKLDTFNHVLDQIKPHTNHIYLHVK- 56

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
             GEPLL   +  L+ A + +GF++ + TNGT+            PK      ++   
Sbjct: 57  --GEPLLHPRIDELLDAAHDKGFKVNITTNGTLIAKNK-------PKLLGKPALRQMN 105


>gi|291085989|ref|ZP_06354577.2| putative radical SAM [Citrobacter youngae ATCC 29220]
 gi|291069086|gb|EFE07195.1| putative radical SAM [Citrobacter youngae ATCC 29220]
          Length = 350

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 25/100 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL------IEEQWITGEKEG 85
           CNL           +C+ C        G KG R ++ +L ++        +Q        
Sbjct: 20  CNL-----------RCQHC-----YQPGYKGKRNSLAELKEIAGQLLHFHQQLAGSSPLP 63

Query: 86  RYCVLTGGEPLLQVD-VPLIQALNKRGFE--IAVETNGTI 122
               LTGGEP    + + L+  L++      IA+ TNGT+
Sbjct: 64  FLLTLTGGEPFAHPEFIKLLHFLHEHPQRPNIAILTNGTL 103


>gi|254556403|ref|YP_003062820.1| molybdenum cofactor biosynthesis protein A [Lactobacillus plantarum
           JDM1]
 gi|254045330|gb|ACT62123.1| molybdenum cofactor biosynthesis protein A [Lactobacillus plantarum
           JDM1]
          Length = 332

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 36/164 (21%)

Query: 27  CRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGE 82
            R S    CNL           +C +C     G+      R  + D++  LIE     G 
Sbjct: 15  VRLSITDRCNL-----------RCVYC-MPKEGLPFFPTDRVLSQDEIVQLIENFAAMGV 62

Query: 83  KEGRYCVLTGGEPLLQVD-VPLIQALNK-RGF-EIAVETNGTIEP-------PQGIDWIC 132
            + R   +TGGEPLL+ D V +++ +    G  ++++ TNG             G+D + 
Sbjct: 63  SKVR---ITGGEPLLRTDVVEIVRRIKAVDGINDVSITTNGLFLAKLAKPLKEAGLDRLN 119

Query: 133 VS---PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
           +S    KA    KI  G  ++ V   + V+        F++  L
Sbjct: 120 ISLDTFKADRYKKITRGGNIQQVLDGIAVA----SKLHFKKIKL 159


>gi|153873319|ref|ZP_02001940.1| radical SAM family protein [Beggiatoa sp. PS]
 gi|152070216|gb|EDN68061.1| radical SAM family protein [Beggiatoa sp. PS]
          Length = 453

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 14/103 (13%)

Query: 31  GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G   D     C             C T +     T G    + ++ + + +  +
Sbjct: 80  GCPYDCGLCPDHEQHSCVTLVEVTEQCNLTCPTCYANSSPTNGRHRTLAEI-ERMFDIVV 138

Query: 80  TGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG--FEIAVETNG 120
             E +     ++GGEP +  D   I  L K+     I V TNG
Sbjct: 139 ANEGQPDVVQISGGEPTIHPDFFQILDLAKQKPIRHIMVNTNG 181


>gi|315634844|ref|ZP_07890126.1| pyruvate formate-lyase activating enzyme [Aggregatibacter segnis
           ATCC 33393]
 gi|315476396|gb|EFU67146.1| pyruvate formate-lyase activating enzyme [Aggregatibacter segnis
           ATCC 33393]
          Length = 246

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 58/180 (32%), Gaps = 45/180 (25%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G    V++L   +     
Sbjct: 21  IRFILFLQGC-----------LMRCKYCHNRDT----WDLHGGKEVTVEELMKEVVSYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
                G     +GGE +LQ +      QA  K G    ++TNG +        + ID   
Sbjct: 66  FMNASGGGVTASGGEAILQAEFVRDWFQACKKEGISTCLDTNGFVRHYDHVIDELID--- 122

Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC 192
                  DL +   +EL     Q  +   N    +F +  LQ       + N  + I Y 
Sbjct: 123 -----ATDLVLLDLKELNDQVHQNLIGVSNKRTLEFAK-YLQ-------KRNQPVWIRYV 169


>gi|270283860|ref|ZP_05965112.2| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium
           gallicum DSM 20093]
 gi|270277580|gb|EFA23434.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium
           gallicum DSM 20093]
          Length = 280

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 51/140 (36%), Gaps = 40/140 (28%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G    +D +   IE   
Sbjct: 58  RMTVF--LSGCPL-----------RCQYCQNPDT----WKMRDGKPVTLDAMIKKIERYK 100

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQ----ALNKRGFEIAVETNG------TIEPPQGI 128
              +        +GGE ++Q     +     A  + G    ++T+G      T E    I
Sbjct: 101 DLFKATNGGITFSGGESMMQP--AFVSRSFRAAKEMGVHTCLDTSGFLGANYTDEMIDDI 158

Query: 129 DWICVSPKAGCDLKIKGGQE 148
           D +C+       L +K G E
Sbjct: 159 D-LCL-------LDVKSGDE 170


>gi|120434818|ref|YP_860504.1| molybdopterin biosynthesis MoaA protein [Gramella forsetii KT0803]
 gi|117576968|emb|CAL65437.1| molybdopterin biosynthesis MoaA protein [Gramella forsetii KT0803]
          Length = 330

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 6/82 (7%)

Query: 41  DRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C    +  +G     + ++  + ++IE      +       LTGGEPL++ 
Sbjct: 25  DRCNLRCFYC----MPEEGIELMEKSSIMTIEEIIELATKFRDLGVDTIRLTGGEPLVRK 80

Query: 100 DV-PLIQALNKRGFEIAVETNG 120
           +   L++ L K G  + + TNG
Sbjct: 81  NFGYLVEELAKLGVTLKITTNG 102


>gi|317407424|gb|EFV87386.1| ribonucleotide reductase activating protein [Achromobacter
           xylosoxidans C54]
          Length = 254

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 28/127 (22%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G +A  +F   +GC             +C +C         T+  RY+   +   ++ + 
Sbjct: 52  GTLAAVIFI--AGCP-----------WRCHYC---HNPELQTRNARYDWRDVRAFLDNRQ 95

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQG-----IDWIC 132
              +      V +GGEPL +  +P +I+   + G+ I + T G            +DW+ 
Sbjct: 96  GLLDA----VVFSGGEPLSEPRLPSMIREARRMGYRIGLHTAGIYPLRLADVLRYLDWVG 151

Query: 133 VSPKAGC 139
           +  KA  
Sbjct: 152 LDIKADA 158


>gi|254446971|ref|ZP_05060438.1| molybdenum cofactor biosynthesis protein A [gamma proteobacterium
           HTCC5015]
 gi|198263110|gb|EDY87388.1| molybdenum cofactor biosynthesis protein A [gamma proteobacterium
           HTCC5015]
          Length = 329

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 14/103 (13%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           GR   + R S          DR   +CR+C  +            +VD+   L+      
Sbjct: 9   GRKVTYVRLS--------VTDRCDLRCRYCMPEGFSDYHVPDHWLSVDEWLHLVGALARG 60

Query: 81  GEKEGRYCVLTGGEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           G ++ R   +TGGEPLL+ ++P LI+ +++  G E IA+ TNG
Sbjct: 61  GVQKVR---ITGGEPLLRRELPELIEGISQIEGIEDIALSTNG 100


>gi|37523340|ref|NP_926717.1| hypothetical protein gll3771 [Gloeobacter violaceus PCC 7421]
 gi|35214344|dbj|BAC91712.1| gll3771 [Gloeobacter violaceus PCC 7421]
          Length = 334

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 19/111 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN +   + +   A+C FCD        T     +   +   + +    G    +Y   T
Sbjct: 6   CNYYVTYKCN---ARCHFCD----IWALTPPPESSYQTICANLRDLKRLG---VKYVDFT 55

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVS 134
           GGEPLL+ D+  L     + G    + TN TI  P+        +D++  S
Sbjct: 56  GGEPLLRPDIVELYAEAKRLGLMTTLTTN-TILYPKKAEALRGLVDFLNFS 105


>gi|242277771|ref|YP_002989900.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242120665|gb|ACS78361.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 449

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 15/103 (14%)

Query: 31  GCNLWSGREQDRLSAQCR------F-CDTD----FVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G   D     C       + CD      F            + +L +L+++   
Sbjct: 77  GCPFDCGLCPDHNQHTCTTLVEITWRCDLKCKVCFASAGQKVPADPTILELDNLLQKVRA 136

Query: 80  TGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGFE-IAVETNG 120
           T         L+GGEP ++ D+P I  L  K GF  + V TNG
Sbjct: 137 TAGPCNLQ--LSGGEPAVRDDLPRIAELAKKHGFPFVQVNTNG 177


>gi|291547922|emb|CBL21030.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Ruminococcus sp.
           SR1/5]
          Length = 231

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 17/97 (17%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            GCNL              +CD+          G+ + +     I+  +   + +     
Sbjct: 105 QGCNLACSYCFGDEG---SYCDS----------GKMSKETAFKAIDYLFEHSDADKVLIT 151

Query: 90  LTGGEPLLQVDV--PLIQALNKRGFEI--AVETNGTI 122
             GGEPLL VD+   +I     +   +  ++ TNGT+
Sbjct: 152 FFGGEPLLAVDLMKEIISYCKTKDKNVGYSMTTNGTL 188


>gi|254250659|ref|ZP_04943978.1| Molybdenum cofactor biosynthesis enzyme [Burkholderia cenocepacia
           PC184]
 gi|124879793|gb|EAY67149.1| Molybdenum cofactor biosynthesis enzyme [Burkholderia cenocepacia
           PC184]
          Length = 393

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 24/117 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN   G    R S        D+  +  +   R +  QL  +       G ++ R   +T
Sbjct: 71  CNFRCGYCMPRESFGA-----DYAFMPSS--ERLSFAQLEKIARAFTSLGVEKIR---IT 120

Query: 92  GGEPLLQVDVP-LIQALN------KRGFEIAVETNGTIEP-------PQGIDWICVS 134
           GGEPLL+ ++  LI+ L        +  EIA+ TNG++           G+  + VS
Sbjct: 121 GGEPLLRRNLEALIERLATLTTVDGKPVEIALTTNGSLLAAKARALRDAGLSRVTVS 177


>gi|240850801|ref|YP_002972201.1| hypothetical protein Bgr_12880 [Bartonella grahamii as4aup]
 gi|240267924|gb|ACS51512.1| hypothetical protein Bgr_12880 [Bartonella grahamii as4aup]
          Length = 352

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 8/75 (10%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105
           C  CD      +  +   +  + L  L     +  EK     +L+GGEPL+   +  ++ 
Sbjct: 48  CIMCD----CWKIKEKNWHTPESLIPLF---RMLKEKGAASVMLSGGEPLMHPKLKDILL 100

Query: 106 ALNKRGFEIAVETNG 120
            LN+ G  + + TNG
Sbjct: 101 TLNELGLPVELNTNG 115


>gi|303238281|ref|ZP_07324817.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
 gi|302594327|gb|EFL64039.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
          Length = 452

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 19/91 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR C   ++     K G    DQ+ D+I++       E     LT
Sbjct: 108 CNL-----------KCRHC---YMESPSNKFGELPFDQVVDIIKQIEKANVLE---VSLT 150

Query: 92  GGEPLLQVDV-PLIQALNKRGFEI-AVETNG 120
           GGEP L+ D+  +I  L + G  +  + TNG
Sbjct: 151 GGEPFLRKDIFDIIDKLTQSGIRVPQICTNG 181


>gi|171185431|ref|YP_001794350.1| radical SAM domain-containing protein [Thermoproteus neutrophilus
           V24Sta]
 gi|170934643|gb|ACB39904.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 377

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 18/96 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   ++             +   L+++     E      + T
Sbjct: 46  CNL-----------KCLHC---YIDAGAEDPRELTTAEALALVDQM---AEVGVPLILFT 88

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ 126
           GGEPL++ D   + +     G ++ + TNGT+  P+
Sbjct: 89  GGEPLVRRDFFEIAERARDAGIKLVLSTNGTLITPE 124


>gi|319940982|ref|ZP_08015319.1| pyruvate formate-lyase 1-activating enzyme [Sutterella
           wadsworthensis 3_1_45B]
 gi|319805555|gb|EFW02350.1| pyruvate formate-lyase 1-activating enzyme [Sutterella
           wadsworthensis 3_1_45B]
          Length = 244

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 37/143 (25%)

Query: 1   MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---D 51
           M L  I   E F ++ G G          RF     GC             +C +C   D
Sbjct: 1   MPLGRIHSYETFGSVDGPG---------VRFVVFMQGC-----------RMRCVYCHNPD 40

Query: 52  TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNK 109
           T  +      G   +  ++  +         KEG    ++GGEPLLQ+D  + L +    
Sbjct: 41  TWRIHA----GEEKSAAEVLRMALRYRPYWGKEGG-ITVSGGEPLLQIDFLIELFELAKT 95

Query: 110 RGFEIAVETNGTIEPPQGIDWIC 132
            G    ++T G +   +   W+ 
Sbjct: 96  EGINTTLDTCG-LPFTKDPAWLV 117


>gi|225868817|ref|YP_002744765.1| radical SAM superfamily protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702093|emb|CAW99732.1| radical SAM superfamily protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 343

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 21/101 (20%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
           +CR C              Y +D +   +       +    +  +TGGEPL+  +   I 
Sbjct: 16  RCRHC-----WASKNVMAHYTLDDIKAAL---GKIKQLNPYHVTITGGEPLVHDNWFEIL 67

Query: 106 ALNKRGFEIAVE--TNGTI----------EPPQGIDWICVS 134
              K  F + VE  TNG +          E  + +D+I +S
Sbjct: 68  QFAKDNFPV-VELFTNGVLLNENNIRQLSELMEELDYIQIS 107


>gi|148977582|ref|ZP_01814161.1| pyruvate formate lyase activating enzyme 1 [Vibrionales bacterium
           SWAT-3]
 gi|145963233|gb|EDK28500.1| pyruvate formate lyase activating enzyme 1 [Vibrionales bacterium
           SWAT-3]
          Length = 246

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C +C   DT         G    V+++ +  +      
Sbjct: 25  VF--LQGC-----------LMRCMYCHNRDT----WDLHDGKEVTVEEIINEAKSYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
           +  G     +GGE +LQ +       A    G    ++TNG
Sbjct: 68  KASGGGITCSGGEAMLQPEFVRDFFLAAKAEGIHTCLDTNG 108


>gi|124027074|ref|YP_001012394.1| Fe-S oxidoreductase [Hyperthermus butylicus DSM 5456]
 gi|123977768|gb|ABM80049.1| Fe-S oxidoreductase [Hyperthermus butylicus DSM 5456]
          Length = 264

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 31  GCNLWSGREQDRLSAQCRFCDT-DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           GCNL           +CRFC    F      +G   + D+ A+ +           R   
Sbjct: 50  GCNL-----------RCRFCWAWRFTWTGYGRGVLLSPDEAAERLMRL--ARRTRVRQVR 96

Query: 90  LTGGEPLL--QVDVPLIQALNKRGFEIAVETNG 120
           L+GGEP +  +  + +++A+   G    +ETNG
Sbjct: 97  LSGGEPTVGWEHLLEVMEAVTGEGLHFVLETNG 129


>gi|42527362|ref|NP_972460.1| radical SAM domain-containing protein [Treponema denticola ATCC
           35405]
 gi|41817947|gb|AAS12371.1| radical SAM domain protein [Treponema denticola ATCC 35405]
 gi|325474379|gb|EGC77567.1| radical SAM domain-containing protein [Treponema denticola F0402]
          Length = 247

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 27/111 (24%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFC---------DTDFVGIQGTKGGRYNVDQLADL 73
            AVF    GCN            +C +C          + F   Q +    Y + ++   
Sbjct: 19  AAVF--LPGCN-----------IRCPYCHNAELALASPSSFTANQESSNDYYELSEIYTF 65

Query: 74  IEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
           +E +           V++GGEP +      LI+        + ++TNG   
Sbjct: 66  LERRKNLISG----LVISGGEPFMSPALFELIERAKSLNLAVKIDTNGLFP 112


>gi|327400189|ref|YP_004341028.1| molybdenum cofactor biosynthesis protein A [Archaeoglobus veneficus
           SNP6]
 gi|327315697|gb|AEA46313.1| molybdenum cofactor biosynthesis protein A [Archaeoglobus veneficus
           SNP6]
          Length = 299

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 19/92 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C       +   G   +V++++ + +  +  G    R   +T
Sbjct: 21  CNL-----------SCIYC---HREGEVNPGEEMHVEEISRISKAFYELG---IRKVKIT 63

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D+  ++Q+      EI++ TNGT+
Sbjct: 64  GGEPLLREDIVEIVQSFPPFD-EISITTNGTL 94


>gi|197119727|ref|YP_002140154.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
 gi|197089087|gb|ACH40358.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase,
           DUF3463-containing protein [Geobacter bemidjiensis Bem]
          Length = 332

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL              + DT             ++ Q  D ++E             +T
Sbjct: 38  CNLACSGCGRIRE----YADTIQ--------EMMSLKQCLDSVDE------CPAPVVTIT 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEP L   +  LI+ + +RG  I + TN  +   + +D +   P    ++ + G +E
Sbjct: 80  GGEPFLYPHIFQLIEKVLERGKHIYLCTN-ALLLEKALDSMKPHPNLVINVHMDGMEE 136


>gi|317488970|ref|ZP_07947500.1| radical SAM superfamily protein [Eggerthella sp. 1_3_56FAA]
 gi|316912044|gb|EFV33623.1| radical SAM superfamily protein [Eggerthella sp. 1_3_56FAA]
          Length = 529

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 25/114 (21%)

Query: 26  FCRFS------GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           F R +       CN            +CR C   ++     K G  + D + DL  +   
Sbjct: 147 FVRTAHWSITGKCNY-----------RCRHC---YMSAPDAKLGEIDHDTMMDLARQIAD 192

Query: 80  TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEI-AVETNGTIEPPQGIDWI 131
            G  E     LTGGEPL++ D + L+ AL      I  + TNG +   + +D +
Sbjct: 193 CGILE---VSLTGGEPLVRRDFMELVDALLSYRIRIAQIYTNGKLVDEKLLDQL 243


>gi|297380130|gb|ADI35017.1| Hypothetical protein HPV225_0953 [Helicobacter pylori v225d]
          Length = 208

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 21/165 (12%)

Query: 50  CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVP-LIQAL 107
           CD+ +      K      +    LIE           +  +LTGGEP L  + P LI  L
Sbjct: 9   CDSLYAVHPKFKETWDYYNDPKSLIERLENLAPNYKHFDFILTGGEPSLYFNNPILISVL 68

Query: 108 N---KRGFEIAVETNGTI----EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP 160
               ++   + VE+NG+I     P        +S K    L+    +E K +  +   + 
Sbjct: 69  EHFYRKKIPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLE----EERKRINLKALQNI 124

Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205
            N       +F L+        +N   +I+      K +LS++ H
Sbjct: 125 LNNAKSAHFKFVLE-------SKNAAQSIAEIQNLLK-QLSLKNH 161


>gi|148269247|ref|YP_001243707.1| radical SAM domain-containing protein [Thermotoga petrophila RKU-1]
 gi|147734791|gb|ABQ46131.1| Radical SAM domain protein [Thermotoga petrophila RKU-1]
          Length = 323

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 16/159 (10%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100
           R + +C+ C   +           + +++ +LI +    G          GGEPLL    
Sbjct: 15  RCNFRCKHC---YCKAGKPHPEELSFEEIKELILDMKELGTWALDIV---GGEPLLHPQI 68

Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP 160
           + ++    + G  + + TNG++   + +  I    K      + G   + L  P+   + 
Sbjct: 69  LDILAFGKEVGQRLMINTNGSLATKEMVQKI----KKANPDVLVG---VSLEGPEPETND 121

Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199
                 +FER ++Q +   F+ E   + I        WR
Sbjct: 122 FVRGIGNFER-AVQGIKN-FVSEGLQITILNVINRRNWR 158


>gi|320593680|gb|EFX06089.1| anaerobic ribonucleoside-triphosphate reductase [Grosmannia
           clavigera kw1407]
          Length = 831

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 24/96 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCV 89
           CNL            C +C           G R  +    +   I E         +  V
Sbjct: 641 CNL-----------ACPWC----HNGPLVNGERDKFTPLDIFRHITET------PHKSLV 679

Query: 90  LTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP 124
           ++GGEP +    +P ++ L K G  I ++ NGT   
Sbjct: 680 ISGGEPTIHKGLLPFMRLLKKAGVSIKLDHNGTSPA 715


>gi|307596000|ref|YP_003902317.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM
           14429]
 gi|307551201|gb|ADN51266.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 385

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 55/144 (38%), Gaps = 31/144 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C+ C   ++       G  +VD    ++++    G    RY  L 
Sbjct: 52  CNL-----------NCKHC---YLSAGKPLSGELSVDDWLLILDKLRDLG---VRYVYLL 94

Query: 92  GGEPLLQVDVPLIQAL---NKRGFEIAVETNGTI--------EPPQGIDWICVS---PKA 137
           GGEP L +   L++ +      GF +++ TNGT+            G+D + VS   P  
Sbjct: 95  GGEPTLLIKRGLLRIIGHAKDLGFYVSMSTNGTLINRENALQLKKAGLDQVQVSLDGPNP 154

Query: 138 GCDLKIKGGQELKLVFPQVNVSPE 161
             +  I+G          VNV  E
Sbjct: 155 AVNDVIRGFGSFDKAIRAVNVLKE 178


>gi|315645364|ref|ZP_07898489.1| Radical SAM domain protein [Paenibacillus vortex V453]
 gi|315279406|gb|EFU42712.1| Radical SAM domain protein [Paenibacillus vortex V453]
          Length = 291

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 20/92 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC          K     V+  A  ++E          +    
Sbjct: 15  CNL-----------ACTFC-----PPTERKANFIKVEDFARRLDEIKPHTRYIYLHVK-- 56

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
            GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 57  -GEPLLHPKIDELLDISHEKGFKVNITTNGTL 87


>gi|189426171|ref|YP_001953348.1| radical SAM protein [Geobacter lovleyi SZ]
 gi|189422430|gb|ACD96828.1| Radical SAM domain protein [Geobacter lovleyi SZ]
          Length = 354

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 17/95 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              CNL            CR C ++    +G     +  D+   L+EE            
Sbjct: 15  TQKCNLRC--------VHCR-CSSESTSSEGD----FTTDEGKRLLEE---IAAFSKPVV 58

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           VL+GGEPL++ D+  L +     G  + + TNG +
Sbjct: 59  VLSGGEPLMRPDIFELAEHGTSLGLRMCMATNGAL 93


>gi|229815885|ref|ZP_04446209.1| hypothetical protein COLINT_02941 [Collinsella intestinalis DSM
           13280]
 gi|229808580|gb|EEP44358.1| hypothetical protein COLINT_02941 [Collinsella intestinalis DSM
           13280]
          Length = 363

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 14/104 (13%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           N       D+ + +C +C     G+     G     +++A  +    I  ++      LT
Sbjct: 14  NYLRISVTDKCNFRCVYC-MPEKGVPARAHGELLTAEEIARFV---RIVAQEGITRVRLT 69

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVE-----TNGTIEPPQGID 129
           GGEPL+    VPLI+ +        +E     TNG + P    D
Sbjct: 70  GGEPLVSHRIVPLIEEIRSIS---EIEDISLTTNGALLPRMAAD 110


>gi|189346577|ref|YP_001943106.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Chlorobium limicola DSM 245]
 gi|189340724|gb|ACD90127.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Chlorobium limicola DSM 245]
          Length = 244

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 25/134 (18%)

Query: 1   MKLYSIKEIFLTLQGE--------GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT 52
           M  Y          GE        GG+      F  + GC + +       + +C +C  
Sbjct: 1   MPSYPFN-------GEEVRRELPVGGYI--PQSFIDYPGC-IAAVIFTVGCNFRCSYC-- 48

Query: 53  DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPL-IQALNK 109
                +  +  R  V++     E   + G         V+TGGEP +   +P  ++   K
Sbjct: 49  --HNPELVEPERTVVNRRIPFHEVVRLVGRNRSCLDGVVVTGGEPAMHASLPESLRTFRK 106

Query: 110 RGFEIAVETNGTIE 123
            G  + ++TNG+  
Sbjct: 107 LGLRVKLDTNGSYP 120


>gi|284175850|ref|ZP_06389819.1| coenzyme PQQ synthesis protein E (pqqE-4) [Sulfolobus solfataricus
           98/2]
          Length = 378

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            + +     + + +C  C   ++            ++   LI+E     E +    +++G
Sbjct: 36  PVVTWNLTRKCNLKCLHC---YINASPEGEDGLTTEEALGLIDEM---AEMKIPLIIMSG 89

Query: 93  GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GEPL++ D   L      +G ++A+ TNGT+
Sbjct: 90  GEPLMRRDFFELASYARSKGIKLALSTNGTL 120


>gi|288931752|ref|YP_003435812.1| radical SAM protein [Ferroglobus placidus DSM 10642]
 gi|288894000|gb|ADC65537.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642]
          Length = 391

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 16/111 (14%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            +       R +  C  C   +   +   G     ++   +I++       +    + +G
Sbjct: 39  PVVVWNSTARCNLNCVHC---YAA-ETLNGEELTTEEAKMMIDDL---AAIKVPVILFSG 91

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTI--------EPPQGIDWICVS 134
           GEPL++ D+  LI     +G   ++ TNGT+            G+D++ VS
Sbjct: 92  GEPLMRKDIYELISYAKSKGIHSSLSTNGTLIDEDVAAKLKEAGVDYVGVS 142


>gi|325290635|ref|YP_004266816.1| glycyl-radical enzyme activating protein family [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324966036|gb|ADY56815.1| glycyl-radical enzyme activating protein family [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 304

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119
           G      +L + +++     ++ G    ++GGEPLLQ+D     +  L +  F +A++T 
Sbjct: 109 GEWKTSSELLETMKKDRPYYQESGGGVTISGGEPLLQLDFLHNFLPKLKQENFHVALDTA 168

Query: 120 GTIEPPQ 126
           G +    
Sbjct: 169 GCVPFSS 175


>gi|295091670|emb|CBK77777.1| glycerol dehydratase, cobalamin-independent, small subunit
           [Clostridium cf. saccharolyticum K10]
          Length = 305

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           KG +  V QL   +++   T  + G    L+GGEPL+Q +    L++A   +G++ A+ET
Sbjct: 107 KGKKMTVQQLIRELKKDATTYRRSGGGITLSGGEPLVQYEFAAELLKACQSQGWDTAIET 166

Query: 119 NGT 121
            G 
Sbjct: 167 TGA 169


>gi|261414630|ref|YP_003248313.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371086|gb|ACX73831.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327444|gb|ADL26645.1| radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 358

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 15/90 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C +D V        R +   + D +       + +    V+T
Sbjct: 38  CNL-----------HCLHCGSDCVKDAIPDMPREDFMAVLDKLTPHI---DPKHFIVVIT 83

Query: 92  GGEPLLQVDVPLI-QALNKRGFEIAVETNG 120
           GGEPL++ D+    Q + KRG+   + TNG
Sbjct: 84  GGEPLMRPDLEECGQEIKKRGYPWGMVTNG 113


>gi|309388472|gb|ADO76352.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Halanaerobium praevalens DSM 2228]
          Length = 232

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 24/123 (19%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VFC   GCN +           C +C    +    T  G   + Q  D         EK 
Sbjct: 22  VFC--QGCNFY-----------CPYCHNKQLIPVETPAGEELMPQ--DYFFRFLKQREKL 66

Query: 85  GRYCVLTGGEPLLQVDV-PLIQALNKR-GFEIAVETNGTIEPPQG-------IDWICVSP 135
                +TGGEPLLQ ++   +  + +     I ++TNG+             ID++ V  
Sbjct: 67  LDGITITGGEPLLQPNLKEFMLKIKEESNLLIKLDTNGSNFLKLKALIKADLIDYLAVDI 126

Query: 136 KAG 138
           K  
Sbjct: 127 KFS 129


>gi|229000246|ref|ZP_04159815.1| Radical SAM domain protein [Bacillus mycoides Rock3-17]
 gi|229007769|ref|ZP_04165358.1| Radical SAM domain protein [Bacillus mycoides Rock1-4]
 gi|228753487|gb|EEM02936.1| Radical SAM domain protein [Bacillus mycoides Rock1-4]
 gi|228759578|gb|EEM08555.1| Radical SAM domain protein [Bacillus mycoides Rock3-17]
          Length = 292

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C FC          +  ++ +V+  +  +++     +    +   
Sbjct: 15  CNL-----------ACSFC------PPTERQKQFLSVEDFSKRLDQIKPHTDYIYLHVK- 56

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 57  --GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 87


>gi|312622876|ref|YP_004024489.1| molybdenum cofactor biosynthesis protein a [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203343|gb|ADQ46670.1| molybdenum cofactor biosynthesis protein A [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 314

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 8/112 (7%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR +  C +C T  +  +  +  + + +++  +I      G ++ R   +TGGEP L+ D
Sbjct: 24  DRCNFFCMYCRTKDLYYE--RIDQLSKEEIFRIISAFKKLGIQKLR---ITGGEPFLRDD 78

Query: 101 V-PLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
           +  +I+  +  G E I + TNG ++  + I  I  SP    ++ +    + K
Sbjct: 79  IVEIIEFAHSIGIENINITTNGWLD-TEKIKKIIKSPLKSVNISLDTLDKEK 129


>gi|300087902|ref|YP_003758424.1| molybdenum cofactor biosynthesis protein A [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527635|gb|ADJ26103.1| molybdenum cofactor biosynthesis protein A [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 329

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 7/93 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +C +C +             + +++A +     +  E    +  LTG
Sbjct: 19  NYLRISVTDRCNLRCMYC-SGASVDHLRHNDILSYEEIAQI---SRVAAELGVNHIRLTG 74

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTI 122
           GEPL++  +  LI+ L    G E I++ TNGT+
Sbjct: 75  GEPLVRPGLSNLIELLTAIPGIEDISLTTNGTL 107


>gi|312114581|ref|YP_004012177.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311219710|gb|ADP71078.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 205

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 40/122 (32%), Gaps = 24/122 (19%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
             VFC   GC              CR+C    +   G+  G    +     +     T  
Sbjct: 23  ATVFC--QGCP-----------WACRYCHNASLMRAGSGAGPSWAE-----VRSFLETRR 64

Query: 83  KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPK 136
                 V +GGEP LQ  +P  +  +   GF + + + G            +DW+    K
Sbjct: 65  GLLDAVVFSGGEPTLQTHLPEAMAEVRAMGFRVGLHSAGPYPARLAAVLPLVDWVGFDVK 124

Query: 137 AG 138
           A 
Sbjct: 125 AP 126


>gi|189348694|ref|YP_001941890.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           multivorans ATCC 17616]
 gi|189338832|dbj|BAG47900.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           multivorans ATCC 17616]
          Length = 374

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 53/145 (36%), Gaps = 24/145 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN   G    R         +D+  +      R +  QL  +       G ++ R   +T
Sbjct: 52  CNFRCGYCMPREIFG-----SDYAFM--PPADRLSFAQLERIARAFVSLGVEKIR---IT 101

Query: 92  GGEPLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKA 137
           GGEPLL+  +  LI+ L        R  E+A+ TNG +           G+  + VS  A
Sbjct: 102 GGEPLLRRHLETLIERLAALTTVDGRPVELALTTNGALLAAKARTLRDAGLTRVTVSLDA 161

Query: 138 GCDLKIKGGQELKLVFPQVNVSPEN 162
             D   +   +  +   +V    E 
Sbjct: 162 LDDAVFRRMSDADVPVSRVLAGIEA 186


>gi|184200236|ref|YP_001854443.1| molybdenum cofactor biosynthesis protein A [Kocuria rhizophila
           DC2201]
 gi|183580466|dbj|BAG28937.1| molybdenum cofactor biosynthesis protein MoaA [Kocuria rhizophila
           DC2201]
          Length = 343

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWIT-GEKEGRYCVLTGGEPLLQ 98
           D+ + +C +C    +  +G K   R ++  +A+++    I   E   R   LTGGEPL++
Sbjct: 24  DKCNLRCTYC----MPAEGMKWLPRESLLSVAEIVRLAGIAVAEFGVREIRLTGGEPLIR 79

Query: 99  VDV-PLIQALNK--RGFEIAVETNG 120
            D+  L+ +L+    G  +++ +NG
Sbjct: 80  PDLEELVGSLHATLPGIPVSMTSNG 104


>gi|161522430|ref|YP_001585359.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           multivorans ATCC 17616]
 gi|160345983|gb|ABX19067.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           multivorans ATCC 17616]
          Length = 408

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 53/145 (36%), Gaps = 24/145 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN   G    R         +D+  +      R +  QL  +       G ++ R   +T
Sbjct: 86  CNFRCGYCMPREIFG-----SDYAFM--PPADRLSFAQLERIARAFVSLGVEKIR---IT 135

Query: 92  GGEPLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKA 137
           GGEPLL+  +  LI+ L        R  E+A+ TNG +           G+  + VS  A
Sbjct: 136 GGEPLLRRHLETLIERLAALTTVDGRPVELALTTNGALLAAKARTLRDAGLTRVTVSLDA 195

Query: 138 GCDLKIKGGQELKLVFPQVNVSPEN 162
             D   +   +  +   +V    E 
Sbjct: 196 LDDAVFRRMSDADVPVSRVLAGIEA 220


>gi|157694065|ref|YP_001488527.1| molybdenum cofactor biosynthesis protein A [Bacillus pumilus
           SAFR-032]
 gi|157682823|gb|ABV63967.1| molybdenum cofactor biosynthesis protein A [Bacillus pumilus
           SAFR-032]
          Length = 335

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 23/158 (14%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA--DLIEEQWITGEKEGRYCVL--TGGEPL 96
           DR + +C +C      I G      N ++L   + IE+      K+     +  TGGEPL
Sbjct: 21  DRCNFRCTYC--MPAEIFGPDYPFLNKEELLSFEEIEQLATLFAKDLGVVKIRITGGEPL 78

Query: 97  LQVDVP-LIQALNK-RGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
           L+ D+P LI+ L+   G E IA+ TNGT+ P                 K+K     ++  
Sbjct: 79  LRKDLPILIEKLSNIPGIEDIAMTTNGTLLPV-------------YADKLKKAGLQRVTI 125

Query: 154 PQVNVSPENYIGFDFERFSLQPM-DGPFLEENTNLAIS 190
              +++P+ +   +    S+Q + DG    +   LAI 
Sbjct: 126 SLDSLNPDRFKQMNGRNISIQKVFDGIEAAKKAGLAIK 163


>gi|152978248|ref|YP_001343877.1| pyruvate formate-lyase activating enzyme [Actinobacillus
           succinogenes 130Z]
 gi|150839971|gb|ABR73942.1| pyruvate formate-lyase activating enzyme [Actinobacillus
           succinogenes 130Z]
          Length = 245

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 24/112 (21%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C +C   DT         G   +V++L   +     
Sbjct: 21  IRFILFLQGC-----------LMRCLYCHNRDT----WDLHGGKEISVEELMKEVVTYKP 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIEPPQGID 129
                G     +GGE +LQ    L   +A    G +  ++TNG +   + ID
Sbjct: 66  FMRASGGGVTASGGEAILQPKFVLEWFRACKAEGIDTCLDTNGFVRHYELID 117


>gi|222109327|ref|YP_002551591.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Acidovorax ebreus TPSY]
 gi|221728771|gb|ACM31591.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Acidovorax ebreus TPSY]
          Length = 256

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 41/124 (33%), Gaps = 26/124 (20%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           GR+A  VFC   GC             +C +C        G              +E+  
Sbjct: 28  GRLAAVVFC--QGCP-----------WRCGYC-----HNAGLLDAAAPAPHRWSEVEQLL 69

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
            T        V +GGEP LQ  +P  +  +   GF   + T G            +DW+ 
Sbjct: 70  HTRRGLLDGVVFSGGEPTLQAALPDALARVRALGFATGLHTAGMYPERLQALLPLLDWVG 129

Query: 133 VSPK 136
           +  K
Sbjct: 130 LDIK 133


>gi|83592624|ref|YP_426376.1| molybdenum cofactor synthesis protein [Rhodospirillum rubrum ATCC
           11170]
 gi|83575538|gb|ABC22089.1| Molybdenum cofactor synthesis protein [Rhodospirillum rubrum ATCC
           11170]
          Length = 330

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +CR+C    +G       + +V  L DL        +   R   LTGGEPL++  
Sbjct: 18  DRCDLRCRYC----MGPHPVFIPKRDVLSLEDLGAIAGAFVDLGVRKIRLTGGEPLVRRG 73

Query: 101 VP-LIQAL---NKRGF--EIAVETNGTI 122
           +P LI AL      G   EIA+ TNG++
Sbjct: 74  LPTLIAALAVHKAEGRLDEIALSTNGSL 101


>gi|15898640|ref|NP_343245.1| coenzyme PQQ synthesis protein E (pqqE-4) [Sulfolobus solfataricus
           P2]
 gi|13815097|gb|AAK42035.1| Coenzyme PQQ synthesis protein E (pqqE-4) [Sulfolobus solfataricus
           P2]
 gi|261603137|gb|ACX92740.1| Radical SAM domain protein [Sulfolobus solfataricus 98/2]
          Length = 378

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            + +     + + +C  C   ++            ++   LI+E     E +    +++G
Sbjct: 36  PVVTWNLTRKCNLKCLHC---YINASPEGEDGLTTEEALGLIDEM---AEMKIPLIIMSG 89

Query: 93  GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GEPL++ D   L      +G ++A+ TNGT+
Sbjct: 90  GEPLMRRDFFELASYARSKGIKLALSTNGTL 120


>gi|152977632|ref|YP_001377149.1| radical SAM domain-containing protein [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026384|gb|ABS24154.1| Radical SAM domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 292

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C FC          +  ++ +V+  +  +++     +    +   
Sbjct: 15  CNL-----------ACSFC------PPTERQKQFLSVEDFSKRLDQIKPHTDYIYLHVK- 56

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 57  --GEPLLHPKIDKLLDLSHEKGFKVNITTNGTL 87


>gi|187933302|ref|YP_001886033.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum B
           str. Eklund 17B]
 gi|187721455|gb|ACD22676.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum B
           str. Eklund 17B]
          Length = 310

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119
           G   +V ++ D + +      +      L+GGEPLLQ +  L  ++     G    +ET 
Sbjct: 110 GKEMSVKEVLDELNKDSSQFRRSNGGVTLSGGEPLLQHEFALEILKGCKSIGIHTTIETT 169

Query: 120 GTIE--PPQGID-WICVSPKAGCDLKIKGGQELKLV 152
           G ++    + I  W+ +       L IK   E K +
Sbjct: 170 GYVDKEILKKIAPWVDL-----VLLDIKTLNEDKHI 200


>gi|298345957|ref|YP_003718644.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Mobiluncus curtisii ATCC 43063]
 gi|298236018|gb|ADI67150.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Mobiluncus curtisii ATCC 43063]
          Length = 266

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 46/150 (30%), Gaps = 37/150 (24%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
             +VF    GC              C +C  +   I       Y    L +L+  +    
Sbjct: 35  VASVF--LQGCP-----------WNCGYC-QNVAIIDPRAPAGYQEADLWELLGRRRGLL 80

Query: 82  EKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICV 133
           +      V +GGEP  Q    P  Q     GF + + T G              +DW+ +
Sbjct: 81  DG----VVFSGGEPTRQAALTPAAQRARDLGFLVGLHTGGAYPKRLEQLLNAGLLDWVGL 136

Query: 134 SPKAGCDLKIKGGQELKLVFPQVNVSPENY 163
             K            L   +PQV   P+ +
Sbjct: 137 DVKG-----------LAQNYPQVVGRPQAH 155


>gi|155967346|gb|ABU41510.1| NirJ1 [Heliophilum fasciatum]
          Length = 392

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 17/96 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C + D+D +       G     +    I++     +      +L+
Sbjct: 47  CNLHC--------IHC-YSDSDEI----EYPGELTTAEAKKFIDDL---ADFNVPVLLLS 90

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           GGEPL++ D+  L++    +G      TNGT+  P+
Sbjct: 91  GGEPLMRPDIFELVEYARSKGIRTTFSTNGTLITPE 126


>gi|308184553|ref|YP_003928686.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           SJM180]
 gi|308060473|gb|ADO02369.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           SJM180]
          Length = 321

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 26/166 (15%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLLQV-DV 101
           +C++C      +  T    ++ ++L    +++E   I  ++  +   +TGGEPLL+    
Sbjct: 24  RCQYC------MPATPLDFFDDEELLPLDNVLEFLKIAIDEGVKKIRITGGEPLLRKGLD 77

Query: 102 PLIQALNKRGFEIA--VETNGTI-------EPPQGIDWICV---SPKAGCDLKIKGGQEL 149
             I  L+    E+A  + TNG +           G+  + V   S K+   LKI     L
Sbjct: 78  EFIAKLHAYNKEVALVLSTNGFLLKKMAKGLKDAGLSRVNVSLDSLKSDRVLKISQKDAL 137

Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
           K     +  S +  +     + ++  M G   +E   L + Y    
Sbjct: 138 KNALEGIEESLKVGLKL---KLNMVVMKGVNDDEILEL-LEYAKNR 179


>gi|302337968|ref|YP_003803174.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Spirochaeta smaragdinae DSM 11293]
 gi|301635153|gb|ADK80580.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Spirochaeta smaragdinae DSM 11293]
          Length = 253

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 21/107 (19%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           GRVA  +F   +GCNL           +C +C + D V  Q ++    ++ ++   + ++
Sbjct: 16  GRVAAVIF--TAGCNL-----------RCPYCHNADLVMGQISQEEGKSIPEIEAFLRKR 62

Query: 78  WITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
                       ++GGEPLL      L+  L        ++TNGT+ 
Sbjct: 63  APLLGG----VCISGGEPLLSPGLFDLVALLVAMEMPWKLDTNGTLP 105


>gi|301057214|ref|ZP_07198343.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300448665|gb|EFK12301.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 341

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 17/98 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR         +G   G  +  +  +++++    G       +LT
Sbjct: 9   CNLNC--------VHCR-----AGSERGPYPGELDTKKCLEILQQIQQVG---NPIVILT 52

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGI 128
           GGEPLL+ D+  L +A  + G  + + TNGT+  PQ I
Sbjct: 53  GGEPLLREDIFDLAKAGTEMGLRMVMATNGTLMTPQRI 90


>gi|302883056|ref|XP_003040432.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256721312|gb|EEU34719.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 833

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 28/147 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C            G  +     D+      T  K     V++
Sbjct: 645 CNL-----------ACPWC-----HNGPVVNGVRDDVTAQDVFRHITSTSHKC---LVIS 685

Query: 92  GGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSPKAGCD-LK 142
           GGEP +    +P ++ L K G  I +++NGT           + +D++ +  K   +  K
Sbjct: 686 GGEPTIHKGLLPFMRLLKKAGVTIKLDSNGTSPEILRQVFSEKLVDFVAMDIKCALEKYK 745

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFE 169
              G+ +K    Q +++     G  +E
Sbjct: 746 TVAGKRIKPKVLQASINLIKESGVPYE 772


>gi|73538842|ref|YP_299209.1| radical SAM family protein [Ralstonia eutropha JMP134]
 gi|72122179|gb|AAZ64365.1| Radical SAM [Ralstonia eutropha JMP134]
          Length = 387

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 25/112 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         +      DT+F        G     +  D++ +            +L+
Sbjct: 36  CNLNCKHCYSTSA------DTNF-------KGELTTAEALDVLGQLKAA---HAPALILS 79

Query: 92  GGEPLLQVDVPLIQAL-NKRGFEIAVETNGTI--------EPPQGIDWICVS 134
           GGEPLL+ D+  I A   + GF +++ +NGT+            G D++ VS
Sbjct: 80  GGEPLLREDLYTIAARAREMGFHLSLSSNGTLLDAAHAARLAESGFDYVGVS 131


>gi|134300007|ref|YP_001113503.1| radical SAM domain-containing protein [Desulfotomaculum reducens
           MI-1]
 gi|134052707|gb|ABO50678.1| Radical SAM domain protein [Desulfotomaculum reducens MI-1]
          Length = 390

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 18/97 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR C   +      K    N  +    I +     E +    + +
Sbjct: 47  CNL-----------RCRHC---YSESDSKKYNELNTQEAKQFINDL---AEFKVPVILFS 89

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQG 127
           GGEPL++ D   L     ++G    + TNGT+  P+ 
Sbjct: 90  GGEPLVRPDFFELAGYATQKGIRTTISTNGTLITPEA 126


>gi|145341975|ref|XP_001416074.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576298|gb|ABO94366.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 324

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 31/136 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTK--GGRYNVDQLADLIEEQ-W 78
           VF    GC             +C FC   D+    +  T   G   +V+ + ++++    
Sbjct: 87  VF--LQGC-----------EKRCAFCCNVDSTHAALAKTPNPGRTMSVNDIVEILKRNRK 133

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNGTIE------PPQGI 128
                EG    L+GGE LLQ     ++A+    ++ G  +A++T  + +          +
Sbjct: 134 YYASSEGGGLTLSGGECLLQP--AFVEAVAIKTHEIGLTVAIDTAASGDAETWNRVLPHV 191

Query: 129 DWICVSPKAGCDLKIK 144
           D + +  K+    K K
Sbjct: 192 DVVLLCVKSSSLEKYK 207


>gi|315657548|ref|ZP_07910430.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492020|gb|EFU81629.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 266

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 47/150 (31%), Gaps = 37/150 (24%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
             +VF    GC              C +C  +   I       Y    L +L+  +    
Sbjct: 35  VASVF--LQGCP-----------WNCGYC-QNVAIIDPRTPAGYQEADLWELLGRRRGLL 80

Query: 82  EKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICV 133
           +      V +GGEP  Q   VP  Q     GF + + T G              +DW+ +
Sbjct: 81  DG----VVFSGGEPTRQTALVPAAQRARDLGFLVGLHTGGAYPKRLEQLLNAGLLDWVGL 136

Query: 134 SPKAGCDLKIKGGQELKLVFPQVNVSPENY 163
             K            L   +PQV   P+ +
Sbjct: 137 DVKG-----------LAQNYPQVVGRPQAH 155


>gi|114567780|ref|YP_754934.1| ribonucleoside-triphosphate reductase, anaerobic-like protein
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114338715|gb|ABI69563.1| ribonucleoside-triphosphate reductase, anaerobic-like protein
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 254

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 44/90 (48%), Gaps = 12/90 (13%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETN 119
            G  Y+++ + + + E+    +      V++GGEP L  ++   ++ + + G+ I +++N
Sbjct: 64  DGKTYDIESILEFLRERKGFLDA----VVISGGEPTLHPELAQDLRRIKEIGYLIKLDSN 119

Query: 120 GTIE-------PPQGIDWICVSPKAGCDLK 142
           G+           + +D++ +  KA  D K
Sbjct: 120 GSNPELLAYLLQEKLLDYVAMDIKAPLDFK 149


>gi|332159146|ref|YP_004424425.1| heme biosynthesis protein [Pyrococcus sp. NA2]
 gi|331034609|gb|AEC52421.1| heme biosynthesis protein [Pyrococcus sp. NA2]
          Length = 543

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 51/135 (37%), Gaps = 16/135 (11%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104
           +C+ C   +           ++++   L+++    G        L+GGEP +    + ++
Sbjct: 158 RCKHC---YQRADKPLSTELSLEEKLMLVDQLDKAGVAA---VALSGGEPTIHPHFLRVV 211

Query: 105 QALNKRGFEIAVETNG-TI--------EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155
           + L+ RG   +V TNG T             GI ++ VS  +    K    + +   + +
Sbjct: 212 KELSSRGIHTSVATNGWTFADKEKLEEAIKAGIKYVEVSVDSAKPEKHDEFRGIPGAWER 271

Query: 156 VNVSPENYIGFDFER 170
              + EN +      
Sbjct: 272 AVKALENAVKLGISH 286


>gi|303238469|ref|ZP_07325003.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
 gi|302593867|gb|EFL63581.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
          Length = 296

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 20/92 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC          K     VD    ++++     +    +    
Sbjct: 15  CNL-----------ACSFC-----PQTRRKAEFMKVDTFGKILDKIKPHTDYIYFHVK-- 56

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            GEPLL  ++   +    ++GF++ + TNGT+
Sbjct: 57  -GEPLLHPEIDKFLDLSCEKGFKVNITTNGTL 87


>gi|292656905|ref|YP_003536802.1| putative molybdenum cofactor biosynthesis protein A [Haloferax
           volcanii DS2]
 gi|291370757|gb|ADE02984.1| probable molybdenum cofactor biosynthesis protein A [Haloferax
           volcanii DS2]
          Length = 320

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 61/180 (33%), Gaps = 29/180 (16%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR +  C +C      DT   G         + D +   +E   +  E        TGGE
Sbjct: 20  DRCNFDCVYCHNEGLGDTR--GPMDASDEEMSADDVVRFLE---VVEEYGVEKVKFTGGE 74

Query: 95  PLLQVDVPLIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS-----PKAGCDLK 142
           P+L+ D+  I        E ++ TNGT            G+D + VS     P+A   + 
Sbjct: 75  PMLRADLEEIIRRTPDSMETSLTTNGTFLGDRAEDLVAAGLDRVNVSQDALDPEAFAQIT 134

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
             G       + +V    +  +        L  +       +    + Y  +NP  +L +
Sbjct: 135 KSGA------YDKVTEGVKAAVDAGLTPVKLNMVVFTKTAGHVEEMVEYVAENPGLQLQL 188


>gi|303243581|ref|ZP_07329923.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
 gi|302486142|gb|EFL49064.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
          Length = 466

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C+ C   +           N ++    I+   I           +
Sbjct: 123 CNL-----------RCKHC---YANAGKPLEDELNTEEALKTID---ILANSGVVAIAFS 165

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPL++ D+  LI        ++++ +NGT+
Sbjct: 166 GGEPLMRKDLFELIDRAKDYNMQVSIASNGTM 197


>gi|288817468|ref|YP_003431815.1| predicted Fe-S oxidoreductases [Hydrogenobacter thermophilus TK-6]
 gi|76667607|dbj|BAE45632.1| hypothetical protein [Hydrogenobacter thermophilus]
 gi|288786867|dbj|BAI68614.1| predicted Fe-S oxidoreductases [Hydrogenobacter thermophilus TK-6]
 gi|308751075|gb|ADO44558.1| Radical SAM domain protein [Hydrogenobacter thermophilus TK-6]
          Length = 360

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 25/110 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C+ C   +      K    + ++   L+      G    ++ +L+
Sbjct: 33  CNL-----------HCKHC---YSSANKDK-EELSYEEAISLVHRLPEAG---VKFTILS 74

Query: 92  GGEPLLQVDVPLIQA-LNKRGFEIAVETNGTI------EPPQGIDWICVS 134
           GGEPLL+ D+  I   L +RG    + TNG +      E  +  D++ +S
Sbjct: 75  GGEPLLREDLFHIARLLKERGIRTYLSTNGILVKEHLKEIKECFDYVGIS 124


>gi|322417559|ref|YP_004196782.1| Radical SAM domain-containing protein [Geobacter sp. M18]
 gi|320123946|gb|ADW11506.1| Radical SAM domain protein [Geobacter sp. M18]
          Length = 357

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 30/138 (21%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              CNL            CR C ++    +G     +  ++   L++E     +      
Sbjct: 15  TQRCNLKC--------VHCR-CSSELTSSEGD----FTTEEGKKLLKE---IADFSKPVV 58

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
           VL+GGEPL++ D+  L +     G  + + TNG +      D +C         K+K   
Sbjct: 59  VLSGGEPLMRPDIFELAEYGTSLGLRMCMATNGALV----TDEVC--------EKMKKAD 106

Query: 148 ELKLVFPQVNVSPENYIG 165
            +K+V   ++ S  +   
Sbjct: 107 -IKMVSLSLDGSTADVHD 123


>gi|170690052|ref|ZP_02881219.1| coenzyme PQQ biosynthesis protein E [Burkholderia graminis C4D1M]
 gi|170144487|gb|EDT12648.1| coenzyme PQQ biosynthesis protein E [Burkholderia graminis C4D1M]
          Length = 414

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 19/135 (14%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVL 90
            LW   E   R    C FC   +  +  T   R  + +Q   ++ E    G  +  +   
Sbjct: 27  PLWLLAELTYRCPLHCAFC---YNPVDYTNHNRELSTEQWLGVLREARALGAAQLGF--- 80

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
           +GGEPL++ D+  L+    K GF   + T+G          + ++ K   DLK  G   +
Sbjct: 81  SGGEPLMRDDLEVLVGEARKLGFYTNLITSG----------VGLTDKRLGDLKAAGLDHI 130

Query: 150 KLVFPQVNVSPENYI 164
           +L F        +++
Sbjct: 131 QLSFQDSTQELNDFL 145


>gi|325831056|ref|ZP_08164380.1| radical SAM domain protein [Eggerthella sp. HGA1]
 gi|325486977|gb|EGC89423.1| radical SAM domain protein [Eggerthella sp. HGA1]
          Length = 475

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 25/114 (21%)

Query: 26  FCRFS------GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           F R +       CN            +CR C   ++     K G  + D + DL  +   
Sbjct: 93  FVRTAHWSITGKCNY-----------RCRHC---YMSAPDAKLGEIDHDTMMDLARQIAD 138

Query: 80  TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEI-AVETNGTIEPPQGIDWI 131
            G  E     LTGGEPL++ D + L+ AL      I  + TNG +   + +D +
Sbjct: 139 CGILE---VSLTGGEPLVRRDFMELVDALLSYRIRIAQIYTNGKLVDEKLLDQL 189


>gi|325848800|ref|ZP_08170310.1| putative pyruvate formate-lyase 1-activating enzyme [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480444|gb|EGC83506.1| putative pyruvate formate-lyase 1-activating enzyme [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 305

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           KG    V+++ + +++      +      L+GGE L+Q D    L++A   RG+  A+ET
Sbjct: 107 KGKNMTVEEVINELKKDESYYHRSNGGITLSGGEALMQADFCRELLKACKARGWHTAIET 166

Query: 119 NG 120
            G
Sbjct: 167 EG 168


>gi|160915923|ref|ZP_02078131.1| hypothetical protein EUBDOL_01946 [Eubacterium dolichum DSM 3991]
 gi|158432399|gb|EDP10688.1| hypothetical protein EUBDOL_01946 [Eubacterium dolichum DSM 3991]
          Length = 249

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 32/127 (25%)

Query: 8   EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F ++ G G        +F   +GC             +C++C   DT  +        
Sbjct: 11  ESFGSVDGPGVRFV----IF--LNGC-----------QMRCKYCHNVDTWQMQE-----A 48

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG- 120
               D+L            K+G    ++GGEPLLQ+D  + L +    +G    ++T+G 
Sbjct: 49  NMTSDELLKKALRYRSY-WKQGGGITVSGGEPLLQIDFVLELFEKAKAKGVHTVLDTSGN 107

Query: 121 --TIEPP 125
             TIE P
Sbjct: 108 PFTIEQP 114


>gi|86148860|ref|ZP_01067118.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. MED222]
 gi|85833353|gb|EAQ51553.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. MED222]
          Length = 246

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C +C   DT         G    V+++ +  +      
Sbjct: 25  VF--LQGC-----------LMRCMYCHNRDT----WDLHDGKEVTVEEIINEAKSYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
           +  G     +GGE +LQ +      +A    G    ++TNG
Sbjct: 68  KASGGGITCSGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNG 108


>gi|322378988|ref|ZP_08053392.1| molybdenum cofactor biosynthesis protein A (MoaA) [Helicobacter
           suis HS1]
 gi|321148592|gb|EFX43088.1| molybdenum cofactor biosynthesis protein A (MoaA) [Helicobacter
           suis HS1]
          Length = 350

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 22/145 (15%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
           +C++C      +  T    ++ ++L     ++E   +  ++  R   +TGGEPL++ D+ 
Sbjct: 52  RCQYC------MPTTPMDFFDREELLPLDKMLEFLKVAIDEGIRKIRITGGEPLIRKDLA 105

Query: 103 -LIQALNKRGFEIA--VETNGTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQEL 149
             I  ++    +++  + TNG +      D        + V   S KA    KI     L
Sbjct: 106 SFIAKIHAYNPQVSLGLTTNGFLLKAHARDLKEAGLERVNVSLDSLKAERVAKISQKDGL 165

Query: 150 KLVFPQVNVSPENYIGFDFERFSLQ 174
           K V   +NV+    +G  F    LQ
Sbjct: 166 KAVLEGINVALRMGLGLKFNMVVLQ 190


>gi|312128061|ref|YP_003992935.1| molybdenum cofactor biosynthesis protein a [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778080|gb|ADQ07566.1| molybdenum cofactor biosynthesis protein A [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 308

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 54/112 (48%), Gaps = 8/112 (7%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR +  C +C T  +  +  +  + + +++  +I      G ++ R   +TGGEP L+ D
Sbjct: 18  DRCNFFCMYCRTKDLYYE--RIDQLSKEEIFRIISAFKKLGIQKLR---ITGGEPFLRDD 72

Query: 101 V-PLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
           +  +I+  +  G E I + TNG ++  + I  +  SP    ++ +    + K
Sbjct: 73  IFEIIEFAHSIGIENINITTNGWLD-TEKIKKVIKSPLKSVNISLDTLDKEK 123


>gi|303242788|ref|ZP_07329256.1| pyruvate formate-lyase activating enzyme [Acetivibrio
           cellulolyticus CD2]
 gi|302589678|gb|EFL59458.1| pyruvate formate-lyase activating enzyme [Acetivibrio
           cellulolyticus CD2]
          Length = 241

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 33/130 (25%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F T+ G G          RF     GC             +C +C   DT        
Sbjct: 11  ESFGTVDGPG---------IRFVIFMQGCPF-----------RCLYCHNPDT----WSND 46

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           +G  Y+VD++ D I       +  G    ++GGEPLLQ +    L +   + G    ++T
Sbjct: 47  RGILYSVDEVFDKIRRYIPYFKNSGGGVTVSGGEPLLQAEFITELFKKCKEEGIHTTIDT 106

Query: 119 NGTIEPPQGI 128
           NG ++    I
Sbjct: 107 NGFVDSNSDI 116


>gi|118444986|ref|YP_878968.1| pyruvate formate-lyase [Clostridium novyi NT]
 gi|118135442|gb|ABK62486.1| pyruvate formate-lyase [Clostridium novyi NT]
          Length = 299

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 43  LSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
              +C  C    +T +       G    V+++ +++ +      + G    L+GGEPL Q
Sbjct: 78  DKNKCINCGKCVETCYANALNMAGTSKKVEEIIEVLRKDNSYYRRSGGGITLSGGEPLYQ 137

Query: 99  VD--VPLIQALNKRGFEIAVET 118
            D  + L++A   +G   AVET
Sbjct: 138 GDFAIELLKACKDKGCHTAVET 159


>gi|90412861|ref|ZP_01220861.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium
           profundum 3TCK]
 gi|90326220|gb|EAS42647.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium
           profundum 3TCK]
          Length = 246

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 55/181 (30%), Gaps = 45/181 (24%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G   +V+++         
Sbjct: 21  IRFIIFMQGC-----------LMRCQYCHNRDT----WDLHDGREVSVEEIMKEAVSYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWIC 132
             +  G     +GGE +LQ +      +A    G    ++TNG     T    + +D   
Sbjct: 66  FMKASGGGVTASGGEAMLQPEFIRDFFRAAQAEGIHTCLDTNGYIRKHTDVIDEVLD--- 122

Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC 192
                  DL +   +++     Q  V   N    DF R+          +      I Y 
Sbjct: 123 -----ATDLVMLDLKQMDDTVHQELVGVSNKRVLDFARY--------LHKRGQKTWIRYV 169

Query: 193 F 193
            
Sbjct: 170 I 170


>gi|257792682|ref|YP_003183288.1| Radical SAM domain-containing protein [Eggerthella lenta DSM 2243]
 gi|257476579|gb|ACV56899.1| Radical SAM domain protein [Eggerthella lenta DSM 2243]
          Length = 475

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 25/114 (21%)

Query: 26  FCRFS------GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           F R +       CN            +CR C   ++     K G  + D + DL  +   
Sbjct: 93  FVRTAHWSITGKCNY-----------RCRHC---YMSAPDAKLGEIDHDTMMDLARQIAD 138

Query: 80  TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEI-AVETNGTIEPPQGIDWI 131
            G  E     LTGGEPL++ D + L+ AL      I  + TNG +   + +D +
Sbjct: 139 CGILE---VSLTGGEPLVRRDFMELVDALLSYRIRIAQIYTNGKLVDEKLLDQL 189


>gi|313498597|gb|ADR59963.1| Radical SAM domain-containing protein [Pseudomonas putida BIRD-1]
          Length = 476

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 31/116 (26%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GCNL            C +C   D D    + + G + +       +E        E R
Sbjct: 110 TGCNL-----------SCTYCYKEDLD----KPSAGKKMSTATAEASVEMLLKESPNEQR 154

Query: 87  Y-CVLTGGEPLLQVDVPLIQ--------ALNKRGFEIA--VETNGTIEPPQGIDWI 131
           Y  V  GGEPL   + PLI+           + G ++   + TN T+   + IDW+
Sbjct: 155 YSVVFFGGEPL--SNRPLIEHMVAYCERRFAEAGKQVEFIMTTNATLLTEEIIDWL 208


>gi|296395235|ref|YP_003660119.1| molybdenum cofactor biosynthesis protein A [Segniliparus rotundus
           DSM 44985]
 gi|296182382|gb|ADG99288.1| molybdenum cofactor biosynthesis protein A [Segniliparus rotundus
           DSM 44985]
          Length = 370

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGG-RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C     G+Q   G     V+++  L+       +        TGGEPLL  
Sbjct: 44  DRCNLRCTYC-MPEEGMQWLPGEDLLTVEEIVRLVR--IAVTKLHVAEVRFTGGEPLLHK 100

Query: 100 DVP----LIQALNKRGFEIAVETNG 120
           D+P    L  AL  R  E+++ TNG
Sbjct: 101 DLPTILRLCSALRPRA-ELSITTNG 124


>gi|225175614|ref|ZP_03729608.1| Radical SAM domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168943|gb|EEG77743.1| Radical SAM domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 391

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL                   +     T+ G+  +D LA+           +    + +
Sbjct: 47  CNLKCIHCYMGSENI------KYENEMSTEEGKKFIDDLAE----------FKSPVILFS 90

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GGEPL++ D   L +    RG  + + TNGT+
Sbjct: 91  GGEPLIRPDFFELAEYATSRGIRVTISTNGTL 122


>gi|212696392|ref|ZP_03304520.1| hypothetical protein ANHYDRO_00929 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676670|gb|EEB36277.1| hypothetical protein ANHYDRO_00929 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 305

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           KG    V+++ + +++      +      L+GGE L+Q D    L++A   RG+  A+ET
Sbjct: 107 KGKNMTVEEVINELKKDESYYHRSNGGITLSGGEALMQADFCRELLKACKARGWHTAIET 166

Query: 119 NG 120
            G
Sbjct: 167 EG 168


>gi|188590775|ref|YP_001921048.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188501056|gb|ACD54192.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 310

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119
           G   +V ++ D + +      +      L+GGEPLLQ +  L  ++     G    +ET 
Sbjct: 110 GKEMSVKEVLDELNKDSSQFRRSNGGVTLSGGEPLLQHEFALEILKGCKSIGIHTTIETT 169

Query: 120 GTIE--PPQGID-WICVSPKAGCDLKIKGGQELKLV 152
           G ++    + I  W+ +       L IK   E K +
Sbjct: 170 GYVDKEILRKIAPWVDL-----VLLDIKTLNEDKHI 200


>gi|91784732|ref|YP_559938.1| molybdenum cofactor biosynthesis protein A [Burkholderia xenovorans
           LB400]
 gi|91688686|gb|ABE31886.1| GTP cyclohydrolase subunit MoaA [Burkholderia xenovorans LB400]
          Length = 369

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 60/150 (40%), Gaps = 29/150 (19%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C      D D+  +  +    +  +++LA +     +   +      LTGG
Sbjct: 45  DRCNFRCVYCMPRAVFDKDYTFLPHSALLSFEEIERLARIFVAHGVEKIR------LTGG 98

Query: 94  EPLLQVDVP-LIQALNK------RGFEIAVETNGTI-------EPPQGIDWICVSPKAGC 139
           EPLL+ ++  LI  L +      R  ++ + TNG++           G+  + VS  A  
Sbjct: 99  EPLLRKNLEFLIDRLARLTTPAGRPLDLTLTTNGSLLERKARSLKDAGLTRVTVSLDALD 158

Query: 140 DLKIKGGQELKLVFPQV--NVSPENYIGFD 167
           D   +   +       V   ++  + +G  
Sbjct: 159 DTLFRRMNDADFAVADVLDGIAAAHAVGLA 188


>gi|148547529|ref|YP_001267631.1| radical SAM domain-containing protein [Pseudomonas putida F1]
 gi|148511587|gb|ABQ78447.1| Radical SAM domain protein [Pseudomonas putida F1]
          Length = 476

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 31/116 (26%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GCNL            C +C   D D    + + G + +       +E        E R
Sbjct: 110 TGCNL-----------SCTYCYKEDLD----KPSAGKKMSTATAEASVEMLLKESPNEQR 154

Query: 87  Y-CVLTGGEPLLQVDVPLIQ--------ALNKRGFEIA--VETNGTIEPPQGIDWI 131
           Y  V  GGEPL   + PLI+           + G ++   + TN T+   + IDW+
Sbjct: 155 YSVVFFGGEPL--SNRPLIEHMVAYCERRFAEAGKQVEFIMTTNATLLTEEIIDWL 208


>gi|296273199|ref|YP_003655830.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Arcobacter nitrofigilis DSM 7299]
 gi|296097373|gb|ADG93323.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Arcobacter nitrofigilis DSM 7299]
          Length = 225

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 30/120 (25%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GCN+           +C++C   D  F     +K G Y+++ +   ++ +    +   
Sbjct: 27  FKGCNM-----------RCQYCYNNDIVF-----SKNGNYSLNDILTFLKNRVGMLDA-- 68

Query: 86  RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAG 138
              VL+GGE  L     + + + + GF+I ++TNG              ID++ +  KA 
Sbjct: 69  --VVLSGGEASLYDLTAICKKIKELGFKIKLDTNGLNLVLIKKLIKEKLIDYMAIDFKAP 126


>gi|307730551|ref|YP_003907775.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp.
           CCGE1003]
 gi|307585086|gb|ADN58484.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp.
           CCGE1003]
          Length = 369

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 67/170 (39%), Gaps = 27/170 (15%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +  +     + +++  L       G ++ R   LTGGE
Sbjct: 45  DRCNFRCVYCMPRAIFDKDYAFLPHS--ALLSFEEIERLARLFVAHGVEKIR---LTGGE 99

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ ++  LI+ L +      R  ++ + TNG++           G+  + VS  A  D
Sbjct: 100 PLLRKNLEFLIERLAQLTTPTGRPLDLTLTTNGSLLARKARSLKDAGLSRVTVSLDALDD 159

Query: 141 LKIKGGQELKLVFPQV--NVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
              +   +       V   ++    +G    + ++    G    E   +A
Sbjct: 160 TLFRRMNDADFAVADVLDGIAAAQAVGLAPLKVNMVVKRGTNDSEIVPMA 209


>gi|257457814|ref|ZP_05622974.1| radical SAM domain protein [Treponema vincentii ATCC 35580]
 gi|257444776|gb|EEV19859.1| radical SAM domain protein [Treponema vincentii ATCC 35580]
          Length = 256

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 52/143 (36%), Gaps = 27/143 (18%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQ-------LADLI 74
            AVF    GCNL           +C +C +++ V     +G   N  Q         + +
Sbjct: 19  AAVF--LPGCNL-----------RCPYCYNSELVCASIFEGPMRNPLQSGNNDYVPIEAV 65

Query: 75  EEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE--PPQGIDWI 131
            E     +   +  V++GGE LL      LI    K G  + ++TNG +       +   
Sbjct: 66  YEHIEKRKAVLQGLVISGGEALLSPVLTELILRAKKTGLAVKLDTNGLLPDALSMLLHDK 125

Query: 132 CVSP-KAGCDLKIK--GGQELKL 151
            + P     D+K       ELK 
Sbjct: 126 TLCPDMIAIDIKTDPARYHELKF 148


>gi|332083967|gb|EGI89176.1| glycyl-radical enzyme activating family protein [Shigella boydii
           5216-82]
          Length = 291

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 65/177 (36%), Gaps = 35/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I   +      L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIF-FRTSGGVTLSGGEVLMQAEFATRF 137

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 138 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQAWDVVKMNLPRV 194


>gi|298682218|gb|ADI95284.1| PeaB [Pseudomonas putida]
          Length = 476

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 31/116 (26%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GCNL            C +C   D D    + + G + +       +E        E R
Sbjct: 110 TGCNL-----------SCTYCYKEDLD----KPSAGKKMSTATAEASVEMLLKESPNEQR 154

Query: 87  Y-CVLTGGEPLLQVDVPLIQ--------ALNKRGFEIA--VETNGTIEPPQGIDWI 131
           Y  V  GGEPL   + PLI+           + G ++   + TN T+   + IDW+
Sbjct: 155 YSVVFFGGEPL--SNRPLIEHMVAYCERRFAEAGKQVEFIMTTNATLLTEEIIDWL 208


>gi|167945021|ref|ZP_02532095.1| Radical SAM domain protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 275

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 14/92 (15%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C  D    +         D++  L+++    G+      VLT
Sbjct: 15  CNL-----------ACAHCYMDAATREAGSEAELTTDEVKALLDQIRERGDDT--MVVLT 61

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D+  L+   N  G  + V TNG +
Sbjct: 62  GGEPLLRRDLEALVAHGNGLGLAMVVGTNGVL 93


>gi|17402569|dbj|BAB78727.1| quinohemoprotein amine dehydrogenase unknown subunit [Paracoccus
           denitrificans]
          Length = 485

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 35/132 (26%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR-YC 88
           +GCNL            C +C          KG +   +      E          R   
Sbjct: 110 TGCNL-----------ACTYCY-KEDLTTPAKGQKMGFETAKASFELLLKQAHARDRVNV 157

Query: 89  VLTGGEPLLQVDVPLIQAL--------NKRGFEI--AVETNGTIEPPQGIDW-------I 131
           V  GGEPL   ++PLI+ L         + G  +  ++ TN T+  P+ +DW       +
Sbjct: 158 VFFGGEPL--SNMPLIRELVAYARPRAAELGKAVDFSLTTNATLLTPELVDWFDAHRFAL 215

Query: 132 CVS---PKAGCD 140
            VS   PKA  D
Sbjct: 216 TVSMDGPKALHD 227


>gi|119384441|ref|YP_915497.1| radical SAM domain-containing protein [Paracoccus denitrificans
           PD1222]
 gi|119374208|gb|ABL69801.1| Radical SAM domain protein [Paracoccus denitrificans PD1222]
          Length = 485

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 35/132 (26%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR-YC 88
           +GCNL            C +C          KG +   +      E          R   
Sbjct: 110 TGCNL-----------ACTYCY-KEDLTTPAKGQKMGFETAKASFELLLKQAHARDRVNV 157

Query: 89  VLTGGEPLLQVDVPLIQAL--------NKRGFEI--AVETNGTIEPPQGIDW-------I 131
           V  GGEPL   ++PLI+ L         + G  +  ++ TN T+  P+ +DW       +
Sbjct: 158 VFFGGEPL--SNMPLIRELVAYARPRAAELGKAVDFSLTTNATLLTPELVDWFDAHRFAL 215

Query: 132 CVS---PKAGCD 140
            VS   PKA  D
Sbjct: 216 TVSMDGPKALHD 227


>gi|296387013|ref|ZP_06876512.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa PAb1]
          Length = 111

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 16/103 (15%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           GR A         +       R +  C+ C +          G     ++   I++    
Sbjct: 23  GRRA--------PVVIWNLLRRCNLTCKHCYS--TSTDSDFRGELETAEILRGIDDLRAA 72

Query: 81  GEKEGRYCVLTGGEPLLQVDVPLIQALNKR--GFEIAVETNGT 121
           G    R  +L+GGEPL+  D+  I A + R  G  +A+ +NGT
Sbjct: 73  G---VRVLILSGGEPLMHPDLFEIAA-HARQAGMFVALSSNGT 111


>gi|86610224|ref|YP_478986.1| molybdenum cofactor biosynthesis protein MoaA [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|123724410|sp|Q2JI46|MOAA_SYNJB RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|86558766|gb|ABD03723.1| molybdenum cofactor biosynthesis protein MoaA [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 325

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 33  NLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           N       DR + +C++C  D   +        R   +++  L+ E ++    +     L
Sbjct: 5   NYLRISLIDRCNFRCQYCMPDEAELTWL-QAPERLTDEEILTLVREVFLPLGIDCFR--L 61

Query: 91  TGGEPLLQVDVP-LIQALNKR-GFE-IAVETNG 120
           TGGEPLL+  +  LI+AL    G   +A+ TNG
Sbjct: 62  TGGEPLLRPGLEHLIRALCSLPGVRDVALTTNG 94


>gi|86605193|ref|YP_473956.1| pyruvate formate-lyase activating enzyme [Synechococcus sp.
           JA-3-3Ab]
 gi|86553735|gb|ABC98693.1| pyruvate formate-lyase activating enzyme [Synechococcus sp.
           JA-3-3Ab]
          Length = 250

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 23/101 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC L           +C +C   D          G    VD L   I+      
Sbjct: 33  IF--LQGCPL-----------RCLYCHNPD----CRDPNAGQVVTVDSLMAEIQRCRNYY 75

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
            K G     +GGEPL+Q +    + +  ++     A++T+G
Sbjct: 76  LKGGG-VTASGGEPLMQPNFVAEIFRRCHELDLHTALDTSG 115


>gi|21227839|ref|NP_633761.1| Heme biosynthesis protein [Methanosarcina mazei Go1]
 gi|20906251|gb|AAM31433.1| Heme biosynthesis protein [Methanosarcina mazei Go1]
          Length = 349

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 17/99 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            +GCNL            CR              G    ++    I++    G+      
Sbjct: 16  TAGCNLNC--------VHCRG-----ASTSSVPEGELTTEEAKHFIDDVVELGK---PIL 59

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           +L+GGEPL + DV  + +     G  + + TNGT+  P+
Sbjct: 60  ILSGGEPLTRTDVFEIARYGTDAGLRVVLATNGTLLTPE 98


>gi|320534425|ref|ZP_08034907.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133372|gb|EFW25838.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 291

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 22/104 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   +GC L           +C +C   DT F+   G         +L   +    
Sbjct: 70  RMTVF--LNGCPL-----------RCLYCHNPDT-FLMKDGEP---VETSELLRRMRRYR 112

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG 120
                      L+GGE L+Q      L+    K G    ++T+G
Sbjct: 113 GVFRASKGGITLSGGEVLMQPAFAGKLLAGAKKMGIHTCIDTSG 156


>gi|193063928|ref|ZP_03045014.1| glycyl-radical enzyme activating protein family [Escherichia coli
           E22]
 gi|192929393|gb|EDV83001.1| glycyl-radical enzyme activating protein family [Escherichia coli
           E22]
          Length = 291

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 65/177 (36%), Gaps = 35/177 (19%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-L--WSGREQD--------RLSAQCRFC-- 50
           IF     +L  GEG       VF  F GC  L  W    +         R  A+C  C  
Sbjct: 24  IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G   ++D L   + +  I   +      L+GGE L+Q +     
Sbjct: 79  CLRDADECPSGAFERIGRDISLDALEREVMKDDIF-FRTSGGVTLSGGEVLMQAEFATRF 137

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           +Q L   G   A+ET G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 138 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 194


>gi|251780075|ref|ZP_04822995.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084390|gb|EES50280.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 310

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 10/96 (10%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119
           G   +V ++ D + +      +      L+GGEPLLQ +  L  ++   + G    +ET 
Sbjct: 110 GKEMSVKEVLDELNKDSSQFRRSNGGVTLSGGEPLLQHEFALEILKGCKRIGIHTTIETT 169

Query: 120 GTI--EPPQGID-WICVSPKAGCDLKIKGGQELKLV 152
           G +  E  + I  W+ +       L IK   E K +
Sbjct: 170 GYVKKEIFKKIAPWVDL-----VLLDIKTLNEDKHI 200


>gi|221198572|ref|ZP_03571617.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           multivorans CGD2M]
 gi|221207801|ref|ZP_03580808.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           multivorans CGD2]
 gi|221172298|gb|EEE04738.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           multivorans CGD2]
 gi|221181023|gb|EEE13425.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           multivorans CGD2M]
          Length = 367

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 24/145 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN   G    R         +D+  +      R +  QL  +       G ++ R   +T
Sbjct: 45  CNFRCGYCMPREIFG-----SDYAFM--PPADRLSFAQLERIARAFVSLGVEKIR---IT 94

Query: 92  GGEPLLQVDVP-LIQAL------NKRGFEIAVETNGTIEP-------PQGIDWICVSPKA 137
           GGEPLL+  +  LI+ L      + R  E+A+ TNG +           G+  + VS  A
Sbjct: 95  GGEPLLRRHLETLIERLAALTTVHGRPVELALTTNGALLAAKARTLRDAGLARVTVSLDA 154

Query: 138 GCDLKIKGGQELKLVFPQVNVSPEN 162
             D   +   +  +   +V    E 
Sbjct: 155 LDDAVFRRMSDADVPVSRVLAGIEA 179


>gi|167033480|ref|YP_001668711.1| radical SAM domain-containing protein [Pseudomonas putida GB-1]
 gi|166859968|gb|ABY98375.1| Radical SAM domain protein [Pseudomonas putida GB-1]
          Length = 476

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 31/116 (26%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GCNL            C +C   D D    + + G + +       +E        E R
Sbjct: 110 TGCNL-----------SCTYCYKEDLD----KPSAGKKMSTATAEASVEMLLKESPNEER 154

Query: 87  Y-CVLTGGEPLLQVDVPLIQ--------ALNKRGFEIA--VETNGTIEPPQGIDWI 131
           Y  V  GGEPL   + PLI+           + G ++   + TN T+   + IDW+
Sbjct: 155 YSVVFFGGEPL--SNRPLIEHMVAYCERRFAEAGKQVEFIMTTNATLLTEEIIDWL 208


>gi|325981399|ref|YP_004293801.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Nitrosomonas sp. AL212]
 gi|325530918|gb|ADZ25639.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Nitrosomonas sp. AL212]
          Length = 372

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C          +     R + ++    ++E       +     + 
Sbjct: 38  CNLAC--------AGCG----KIAHPEDVLDQRLSYEECMQAVDE------CDAPMVSIP 79

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPLL  ++P ++  + +R   + + TN  +   + ID    SP     + + G QE
Sbjct: 80  GGEPLLHKEMPQIVAGIIQRKKYVYLCTN-ALLLKKRIDDYTPSPYLTFSIHLDGMQE 136


>gi|194333949|ref|YP_002015809.1| radical SAM domain-containing protein [Prosthecochloris aestuarii
           DSM 271]
 gi|194311767|gb|ACF46162.1| Radical SAM domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 453

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR+C   +               + +LI+   ITG        L 
Sbjct: 137 CNL-----------SCRYC--FYNAGHTDTPDVLKTQDILNLIDR--ITGSTVSNMVFL- 180

Query: 92  GGEPLLQVDVPLI-QALNKRGFEIAVETNGTI 122
           GGEPLL  D+ LI +    RG +  + TNGT+
Sbjct: 181 GGEPLLHDDIALIGRYALDRGIKSQLVTNGTL 212


>gi|224012631|ref|XP_002294968.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|224013938|ref|XP_002296633.1| pyruvate formate-lyase [Thalassiosira pseudonana CCMP1335]
 gi|220968985|gb|EED87329.1| pyruvate formate-lyase [Thalassiosira pseudonana CCMP1335]
 gi|220969407|gb|EED87748.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 231

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 69/192 (35%), Gaps = 31/192 (16%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
           E F +  G G       VF    GC           S +C +C   +T  +    +    
Sbjct: 9   ETFTSNDGPGIRT---LVF--LQGC-----------SKRCMYCSNPETQCIVDPFSCPEV 52

Query: 65  Y-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGT 121
             + +++A++++               +GGEPLLQ +    + +     G    V+T+G 
Sbjct: 53  AVSDEEVANVLKRYEHFLRPNNGGITFSGGEPLLQPNFVGSVFKKAKSIGLTTCVDTSGH 112

Query: 122 IEP------PQGIDWICVSPKAGCDLKIKGGQE-LKLVFPQVNVSPENYIGFDFERFSLQ 174
             P          D++ +  K G D+K+      +     Q       Y+  +++   L 
Sbjct: 113 GNPAIWNKCLPHTDYVMLCLK-GMDMKLASFISGVSESNNQRAREFAKYVRDNYKNIKLS 171

Query: 175 PMDGPFLEENTN 186
            +    L++ T+
Sbjct: 172 -IRWVLLKDMTD 182


>gi|281357881|ref|ZP_06244366.1| glycyl-radical enzyme activating protein family [Victivallis
           vadensis ATCC BAA-548]
 gi|281315539|gb|EFA99567.1| glycyl-radical enzyme activating protein family [Victivallis
           vadensis ATCC BAA-548]
          Length = 300

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 6/96 (6%)

Query: 31  GCNLWSGREQDRLSAQCRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGR 86
           GC+             C  C            +  G   +V+++   + +  +  +  G 
Sbjct: 68  GCHKIEQGRHVFNREFCVGCGKCVKHCLSDALELCGQLRSVEEVISEVLKDKLFYDNSGG 127

Query: 87  YCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
              L+GGEP+ Q D    L++   + G  + +ET G
Sbjct: 128 GITLSGGEPMAQFDFTQELLKRAKEAGLHVCLETCG 163


>gi|170743008|ref|YP_001771663.1| radical SAM domain-containing protein [Methylobacterium sp. 4-46]
 gi|168197282|gb|ACA19229.1| Radical SAM domain protein [Methylobacterium sp. 4-46]
          Length = 351

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 45/130 (34%), Gaps = 30/130 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C               + D    ++++            VL 
Sbjct: 40  CNLL-----------CETC--PRTFETLEPPADMSWDLFTRIVDQVPGIAR-----VVLH 81

Query: 92  G-GEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
           G GEP+L  D+P +I+ L  RG  +   TNGT+            PK   DL   G  EL
Sbjct: 82  GVGEPMLVDDLPRMIRHLKARGTYVLFNTNGTLMQ----------PKRFRDLIETGLDEL 131

Query: 150 KLVFPQVNVS 159
           ++     + +
Sbjct: 132 RVSLDAADRA 141


>gi|317010985|gb|ADU84732.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           SouthAfrica7]
          Length = 321

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 46  QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102
           +C++C   T      G       +D + + ++     G K+ R   +TGGEPLL+     
Sbjct: 24  RCQYCMPATPLNFFDGE--ELLPLDNVLEFLKIAIDEGIKKIR---ITGGEPLLRKGLDE 78

Query: 103 LIQALNKRGFEIA--VETNG 120
            I  L+    E+A  + TNG
Sbjct: 79  FIARLHAYNKEVALVLSTNG 98


>gi|253568132|ref|ZP_04845543.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 1_1_6]
 gi|251842205|gb|EES70285.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 1_1_6]
          Length = 208

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 17/106 (16%)

Query: 15  GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI 74
           GEG           F GC L           +C++C              Y+  QL + +
Sbjct: 18  GEGVTTLVA-----FHGCPL-----------RCKYCLNPQSLHSEDIWKHYDCGQLYEEV 61

Query: 75  EEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119
           ++  +            GGEP LQ D +   + L  + ++++VET+
Sbjct: 62  KQDELYFLATHGGITFGGGEPCLQSDFIDEFRQLCGQEWQLSVETS 107


>gi|167768525|ref|ZP_02440578.1| hypothetical protein CLOSS21_03084 [Clostridium sp. SS2/1]
 gi|167710049|gb|EDS20628.1| hypothetical protein CLOSS21_03084 [Clostridium sp. SS2/1]
          Length = 368

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 16/93 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90
           CNL               CD  +V +   +      +  L + I       +    + +L
Sbjct: 35  CNLN--------------CDMCYVHLSKQEMQSQGRLRSLDEWISLAKQMKDAGTLFLLL 80

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           TGGEPLL      L   L   G  + + TNGT+
Sbjct: 81  TGGEPLLFPQFKELYCVLKDMGMILTLNTNGTL 113


>gi|322380493|ref|ZP_08054683.1| molybdenum cofactor biosynthesis protein A [Helicobacter suis HS5]
 gi|321147073|gb|EFX41783.1| molybdenum cofactor biosynthesis protein A [Helicobacter suis HS5]
          Length = 350

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 22/145 (15%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
           +C++C      +  T    ++ ++L     ++E   +  ++  R   +TGGEPL++ D+ 
Sbjct: 52  RCQYC------MPTTPMDFFDREELLPLDKMLEFLKVAIDEGIRKIRITGGEPLIRKDLA 105

Query: 103 -LIQALNKRGFEIA--VETNGTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQEL 149
             I  ++    +++  + TNG +      D        + V   S KA    KI     L
Sbjct: 106 SFIAKIHAYNPQVSLGLTTNGFLLKAHARDLKEAGLERVNVSLDSLKAERVAKISQKDGL 165

Query: 150 KLVFPQVNVSPENYIGFDFERFSLQ 174
           K V   +N +    +G  F    LQ
Sbjct: 166 KAVLEGINAALRMGLGLKFNMVVLQ 190


>gi|218778684|ref|YP_002430002.1| glycyl-radical enzyme activating protein family [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760068|gb|ACL02534.1| Pyruvate formate lyase activating enzyme [Desulfatibacillum
           alkenivorans AK-01]
          Length = 305

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 46/155 (29%), Gaps = 47/155 (30%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQ-----------CRFCDT--------------DF-- 54
           R  VF  F GC L      +  S +           C  CDT               F  
Sbjct: 21  RSVVF--FKGCPLSCLWCHNPESKRRELEISYDPKDCVHCDTCMEICTEKALSPDNPFFI 78

Query: 55  ----------------VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
                            G     G    +D +   +       +  G    L+GGEP L 
Sbjct: 79  DRKKCTLCMQCVEACPSGALSRVGSVMEIDAIVRDVARDKPFFKTSGGGVTLSGGEPTLS 138

Query: 99  VDVP--LIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           +D    L++A  ++   + VET G       +D +
Sbjct: 139 MDFLSRLVRAFREQEIHVLVETCGMFRLEDFLDKV 173


>gi|223038453|ref|ZP_03608747.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Campylobacter rectus RM3267]
 gi|222880310|gb|EEF15397.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Campylobacter rectus RM3267]
          Length = 228

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 28/129 (21%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           F+GCN+           +C +C   +     T  G+ +  +    ++++           
Sbjct: 29  FAGCNM-----------RCAYC---YNVPIVTGAGQISCAEFIKFLDKRKGKLSG----V 70

Query: 89  VLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGCD 140
           V +GGE  L    +PL   +  RGF + V+TNG+     G       ID+I +  KA  +
Sbjct: 71  VFSGGECTLSPAFLPLASEVKSRGFLLKVDTNGSNLTIIGQAISLNLIDYIALDFKATKE 130

Query: 141 --LKIKGGQ 147
             LK+ G  
Sbjct: 131 KFLKVSGSN 139


>gi|145591136|ref|YP_001153138.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145282904|gb|ABP50486.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 331

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N++        + +C +C       +    GR+    L   + E+ +      +Y  L G
Sbjct: 5   NVFQVGVSTTCNGRCVYC--PLTIYRDKWVGRFMEFSLFQRVVEEGVGAGV--KYVHLQG 60

Query: 93  -GEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
            GEPLL      +  L +R F +   TNG +
Sbjct: 61  WGEPLLHPQFLEMLMLARRHFSVGFTTNGVL 91


>gi|34498973|ref|NP_903188.1| molybdenum cofactor biosynthesis protein A [Chromobacterium
           violaceum ATCC 12472]
 gi|34104822|gb|AAQ61179.1| molybdenum cofactor biosynthesis protein A [Chromobacterium
           violaceum ATCC 12472]
          Length = 324

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C                 D++  ++      G +  R   LTGGEPLL+ +
Sbjct: 19  DRCDLRCSYCLPKGFKHFEEPENWLTFDEIERVVAAFARLGTRRVR---LTGGEPLLRRN 75

Query: 101 VP-LIQALNKR-GF-EIAVETNGT 121
           +P L   L+   G  ++++ TNGT
Sbjct: 76  LPQLAARLSALPGLDDLSLTTNGT 99


>gi|95931056|ref|ZP_01313783.1| Ribonucleoside-triphosphate reductase, anaerobic-like
           [Desulfuromonas acetoxidans DSM 684]
 gi|95132865|gb|EAT14537.1| Ribonucleoside-triphosphate reductase, anaerobic-like
           [Desulfuromonas acetoxidans DSM 684]
          Length = 231

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 23/119 (19%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            GCNL            C FC    +     +     V+ L D ++++    +      V
Sbjct: 25  GGCNL-----------SCGFCHNPTLIDDFDQYPDMPVEALLDALQQRLGFIDG----VV 69

Query: 90  LTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIEPP-------QGIDWICVSPKAGCD 140
           ++GGEP L   +   +  + + G  + ++TNG            Q +D++ +  K   +
Sbjct: 70  ISGGEPTLAPTLSSTLSQIKQMGLAVKLDTNGLRPDVVARLMEQQLLDYVALDVKTSPE 128


>gi|309776339|ref|ZP_07671327.1| pyruvate formate-lyase 1-activating enzyme [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308915935|gb|EFP61687.1| pyruvate formate-lyase 1-activating enzyme [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 231

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 27/118 (22%)

Query: 8   EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
           E F ++ G G        +F    GC           + +C++C          K G  +
Sbjct: 11  ETFGSVDGPGVRFV----IF--LKGC-----------ALRCQYC----HNPDTWKCGEPD 49

Query: 67  VDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
            D    L+++        G+     ++GGEPLLQ+D  + L Q   K G    ++T G
Sbjct: 50  TDS-EQLLKKALRYRSYWGKNGGITVSGGEPLLQIDFLLDLFQQAKKEGIHTVIDTAG 106


>gi|294338901|emb|CAZ87238.1| Coenzyme PQQ synthesis protein E (Pyrroloquinoline quinone
           biosynthesis protein E) (Coenzyme PQQ synthesis protein
           III) [Thiomonas sp. 3As]
          Length = 372

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGG-RYNVDQLADLIEEQWITGEKEGRYCVL 90
            LW   E   R    C FC   +  +   +     + D    ++++    G  +   C  
Sbjct: 8   PLWILAELTYRCPLHCAFC---YNPVDFARHDQEISTDDWLRVLQQGRALGAVQ---CGF 61

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           +GGEPLL+ D+  L+   ++ G+   + T+G
Sbjct: 62  SGGEPLLRDDLEVLVAEAHRLGYYTNLLTSG 92


>gi|29346465|ref|NP_809968.1| pyruvate formate-lyase activating enzyme [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298387757|ref|ZP_06997308.1| pyruvate formate-lyase-activating enzyme [Bacteroides sp. 1_1_14]
 gi|29338361|gb|AAO76162.1| pyruvate formate-lyase activating enzyme [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298259613|gb|EFI02486.1| pyruvate formate-lyase-activating enzyme [Bacteroides sp. 1_1_14]
          Length = 208

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 17/106 (16%)

Query: 15  GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI 74
           GEG           F GC L           +C++C              Y+ +QL + +
Sbjct: 18  GEGVTTLVA-----FHGCPL-----------RCKYCLNPQSLHSEGIWKNYDCEQLYEEV 61

Query: 75  EEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119
            +  +            GGEP LQ D +   + L  + ++++VET+
Sbjct: 62  RQDELYFLATNGGITFGGGEPCLQSDFIYEFRQLCGQEWQLSVETS 107


>gi|160942352|ref|ZP_02089660.1| hypothetical protein CLOBOL_07237 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434716|gb|EDP12483.1| hypothetical protein CLOBOL_07237 [Clostridium bolteae ATCC
           BAA-613]
          Length = 305

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           KG   ++ Q+   +++   T  + G    L+GGEPL+Q +    L+QA   +G+  A+ET
Sbjct: 107 KGKTMSIQQVIRELKKDATTYRRSGGGITLSGGEPLMQYEFASELLQACKGQGWNTAIET 166

Query: 119 NG 120
            G
Sbjct: 167 TG 168


>gi|312116276|ref|YP_004013872.1| glycyl-radical enzyme activating protein family [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311221405|gb|ADP72773.1| glycyl-radical enzyme activating protein family [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 304

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALN-KRGFEIAVET 118
           G R  V++++  + + W    + G    L+GGE L Q      L+ AL+   GF   V+T
Sbjct: 108 GRRMTVEEVSTEVRQHWRIFMQSGGGVTLSGGEVLAQPAFAGALLSALHDDLGFHTCVDT 167

Query: 119 NGTIEPP------QGIDWICVSPKAGCDLKIKGG 146
            G +           ID I +  K   D + +  
Sbjct: 168 TGFLPWENFERLLPAIDLILLDLKHMDDSRHREA 201


>gi|323136947|ref|ZP_08072027.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Methylocystis sp. ATCC 49242]
 gi|322397708|gb|EFY00230.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Methylocystis sp. ATCC 49242]
          Length = 383

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 49/142 (34%), Gaps = 23/142 (16%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +V+     ++E            V+
Sbjct: 38  CNL-----------ACSGCGKIDY--PDHILNKRLSVEDALASVDECG------APVVVI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
            GGEPLL  D+P +++ +  RG    V TN  +   + ID    SP     + + G +E+
Sbjct: 79  AGGEPLLHKDLPQIVEGVIARGKFAIVCTN-ALLLAKKIDQFKPSPYFTWSIHLDGDKEM 137

Query: 150 -KLVFPQVNVSPENYIGFDFER 170
                 Q  V           +
Sbjct: 138 HDHAVSQEGVYERAIEAIKLAK 159


>gi|308062089|gb|ADO03977.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           Cuz20]
          Length = 321

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 46  QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102
           +C++C   T              +D + + ++     G K+ R   +TGGEPLL+     
Sbjct: 24  RCQYCMPTTPLNFFDDE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDE 78

Query: 103 LIQALNKRGFEIA--VETNGTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQELK 150
            I  L+    E+A  + TNG +      D        + V   S K+   LKI     LK
Sbjct: 79  FIAKLHAYNKEVALVLSTNGFLLKKMAKDLKNAGLSRVNVSLDSLKSDRVLKISQKDALK 138

Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
                V  S +  +     + ++  M     +E   L + Y    
Sbjct: 139 NTLEGVEESLKVGLKL---KLNMVVMKSVNDDEILEL-LEYAKNR 179


>gi|295110857|emb|CBL24810.1| Pyruvate-formate lyase-activating enzyme [Ruminococcus obeum
           A2-162]
          Length = 245

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 28/118 (23%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
           E F ++ G G    R  +F   SGC           + +C+FC   DT     +  +G +
Sbjct: 13  ESFGSVDGPGV---RYVIF--LSGC-----------AMRCQFCHNPDT----WKMGEGQQ 52

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETN 119
           Y   QL             +G    ++GGEPLLQ+D  LI+        G    ++T+
Sbjct: 53  YTPSQLLKQALRYKNYWGNKGG-ITVSGGEPLLQIDF-LIEFFRMAKAEGVHTTLDTS 108


>gi|170290386|ref|YP_001737202.1| radical SAM domain-containing protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174466|gb|ACB07519.1| Radical SAM domain protein [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 349

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 12/80 (15%)

Query: 46  QCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP- 102
           +C  C   +            +N  ++ D +EE             ++GGEPLL+   P 
Sbjct: 44  RCSHC---YQSEWRPIRELSDFNELRIVDQLEELG------KPLIFISGGEPLLKSQTPQ 94

Query: 103 LIQALNKRGFEIAVETNGTI 122
           LI+ L  R F + + TNG++
Sbjct: 95  LIRELKARDFRVILSTNGSL 114


>gi|114566232|ref|YP_753386.1| radical SAM domain-containing protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337167|gb|ABI68015.1| radical SAM domain protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 333

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 49  FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL 107
           FCD  +           + +Q   LIEE    G    R  + +GGEPL++ D+  L Q  
Sbjct: 14  FCDHCYRDAGARLEDELSTEQAKKLIEEIKKAG---FRIMIFSGGEPLMRPDIFELGQYA 70

Query: 108 NKRGFEIAVETNGTIEPPQ 126
            ++G  + + TNG++  P+
Sbjct: 71  TRQGLRVVMGTNGSLISPE 89


>gi|119385711|ref|YP_916766.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Paracoccus denitrificans PD1222]
 gi|119376306|gb|ABL71070.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Paracoccus denitrificans PD1222]
          Length = 208

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 38/125 (30%), Gaps = 28/125 (22%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
              +F    GC              C +C    +     +G         D  E      
Sbjct: 22  VATLF--LQGCP-----------WDCPYCHNPHLIPPEAEGT-------LDWQEVLGFLA 61

Query: 82  EKEGRY--CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICV 133
            + G     V +GGEP LQ  +P  ++A+   GF   + T G             DW+  
Sbjct: 62  GRRGLLDGVVFSGGEPTLQRGLPEALRAVRALGFRTGLHTAGPYPARLAAVLPLCDWVGF 121

Query: 134 SPKAG 138
             KA 
Sbjct: 122 DVKAP 126


>gi|289661642|ref|ZP_06483223.1| molybdenum cofactor biosynthesis protein A [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 343

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 16/102 (15%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
           +C +C   D            R + DQL  L+      G  + R   LTGGEPLL+ D+P
Sbjct: 36  RCGYCMPADRVPDDYGFDSQQRLSFDQLETLVRAFVSVGVTKVR---LTGGEPLLRRDLP 92

Query: 103 -LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVS 134
            LI  L+   G E +A+ TNGT+   Q +         I VS
Sbjct: 93  SLIARLSAIEGIEDLALTTNGTLLARQAVALRQAGLRRITVS 134


>gi|160946140|ref|ZP_02093351.1| hypothetical protein PEPMIC_00102 [Parvimonas micra ATCC 33270]
 gi|158447663|gb|EDP24658.1| hypothetical protein PEPMIC_00102 [Parvimonas micra ATCC 33270]
          Length = 281

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 41/164 (25%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQ------------------------------CRFCDTD 53
           ++F    GCN       +  + +                              C  CD  
Sbjct: 24  SIF--LQGCNFNCFYCHNPETIRHCINCMECIPSCPTKSLKNVNGKIVWNDKTCINCDEC 81

Query: 54  FVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALN 108
               +     +   + V++  + I++         R   ++GGE  LQ      L   + 
Sbjct: 82  IRVCKHLSSPKIYNWTVEETVERIKKNMPF----IRGITVSGGECTLQHTFLTSLFTEVR 137

Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
           K G    V+TNG I   +  D++ VS     D+K    +E   +
Sbjct: 138 KLGLTCFVDTNGGIPLKRLPDFVEVSDAFMLDIKAFDNEEHLFI 181


>gi|312134714|ref|YP_004002052.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           owensensis OL]
 gi|311774765|gb|ADQ04252.1| Radical SAM domain protein [Caldicellulosiruptor owensensis OL]
          Length = 314

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR +  C +C T  +  +  +  + +  ++  +I      G ++ R   +TGGEP L+ D
Sbjct: 24  DRCNFFCMYCRTKDLCYE--RAEQLSKGEIFRIISAFKKLGIQKLR---ITGGEPFLRDD 78

Query: 101 V-PLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
           +  +I+  +  G E I + TNG ++  + I  +  SP    ++ +    + K  F
Sbjct: 79  IFEIIEFAHSIGIENINITTNGWLD-TEKIKKVIKSPLKSVNISLDTLDKEKYRF 132


>gi|124266885|ref|YP_001020889.1| putative ribonucleotide reductase activating transmembrane protein
           [Methylibium petroleiphilum PM1]
 gi|124259660|gb|ABM94654.1| putative ribonucleotide reductase activating transmembrane protein
           [Methylibium petroleiphilum PM1]
          Length = 223

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 39/123 (31%), Gaps = 27/123 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF    GC           + +C +C            GR     +    E       + 
Sbjct: 35  VFV--QGC-----------AWRCVYC------HNPQLQGRQPAPGIPHWAEVHDWLRTRR 75

Query: 85  GRY--CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPK 136
           G     V +GGEP L   +P  + A+   GF   + T G            +DW+ +  K
Sbjct: 76  GLLDAVVFSGGEPTLDPALPAALDAVRALGFRTGLHTAGMAPRRLQAVLPSLDWVGLDIK 135

Query: 137 AGC 139
           A  
Sbjct: 136 APL 138


>gi|261349664|ref|ZP_05975081.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanobrevibacter smithii DSM 2374]
 gi|288861622|gb|EFC93920.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanobrevibacter smithii DSM 2374]
          Length = 234

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 18/126 (14%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N+       +    CR+C             + + +++   I++            V++G
Sbjct: 16  NMSLVIFMSKCPLACRYC---HNAELLDDNTQLSFEEIKKEIDD----AADFIDAVVISG 68

Query: 93  GEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGCDL-- 141
           GEPL+Q D  + +++ ++K G +  ++T+G              +D+I +  KA  +   
Sbjct: 69  GEPLVQSDAVIEILKYVHKLGLKTKLDTSGIYPDKLENILKLNILDFISLDVKAPFEKYR 128

Query: 142 KIKGGQ 147
           K+ G  
Sbjct: 129 KVTGSN 134


>gi|222445792|ref|ZP_03608307.1| hypothetical protein METSMIALI_01435 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435357|gb|EEE42522.1| hypothetical protein METSMIALI_01435 [Methanobrevibacter smithii
           DSM 2375]
          Length = 234

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 18/126 (14%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N+       +    CR+C             + + +++   I++            V++G
Sbjct: 16  NMSLVIFMSKCPLACRYC---HNAELLDDNTQLSFEEIKKEIDD----AADFIDAVVISG 68

Query: 93  GEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGCDL-- 141
           GEPL+Q D  + +++ ++K G +  ++T+G              +D+I +  KA  +   
Sbjct: 69  GEPLVQSDAVIEILKYVHKLGLKTKLDTSGIYPDKLENILKLNILDFISLDVKAPFEKYR 128

Query: 142 KIKGGQ 147
           K+ G  
Sbjct: 129 KVTGSN 134


>gi|317009222|gb|ADU79802.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           India7]
          Length = 321

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 26/166 (15%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLLQV-DV 101
           +C++C      +  T    ++ ++L    +++E   I  ++  +   +TGGEPLL+    
Sbjct: 24  RCQYC------MPATPLDFFDDEELLPLDNVLEFLKIAIDEGVKKIRITGGEPLLRKGLD 77

Query: 102 PLIQALNKRGFEIA--VETNGTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQEL 149
             I  L+    E+A  + TNG +      D        + V   S K+   LKI     L
Sbjct: 78  EFIAKLHAYNKEVALVLSTNGFLLKKMAKDLKNAGLSRVNVSLDSLKSDRVLKISQKDAL 137

Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
           K     +  S +  +           +     +E   L + Y    
Sbjct: 138 KNTLEGIEESLKVGLKLKLNTVV---IKSVNDDEILEL-LEYAKNR 179


>gi|238894042|ref|YP_002918776.1| pyruvate formate lyase II activase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238546358|dbj|BAH62709.1| putative pyruvate formate lyase activating enzyme [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 291

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 45/137 (32%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS--------------AQCRF 49
           IF     +L  G+G       VF  F GC        +  S               +C  
Sbjct: 23  IFNLQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIQTLRRESKCLRCTR 77

Query: 50  CDTDFV----GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
           C  D      G     G    +D L   + +  +     G    L+GGE L+Q       
Sbjct: 78  CQQDVAECPSGAWEQIGRDVTLDNLLQEVLKDEVFFRASGGGVTLSGGEVLMQAGFAARF 137

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L + G   A+ET G
Sbjct: 138 LQRLRQWGIRTAIETAG 154


>gi|218782945|ref|YP_002434263.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218764329|gb|ACL06795.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 334

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 23/103 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C     G         + DQ  + I      G     +   +
Sbjct: 34  CNL-----------RCAYC-----GFPDLPSDEMDADQWLEAIHAFLQAGTLRMGF---S 74

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEPPQG--IDWI 131
           GGEPLL Q    L+QA + +   I + TNG + P +   + W+
Sbjct: 75  GGEPLLRQDLGRLLQAAHGKAL-ITLNTNGLLLPERKGLLKWV 116


>gi|303231350|ref|ZP_07318084.1| molybdenum cofactor biosynthesis protein A [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513946|gb|EFL55954.1| molybdenum cofactor biosynthesis protein A [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 321

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105
           C +C       + T   ++ +  + + +       +   +   LTGGEPLL   +  L+ 
Sbjct: 24  CPYC----RPAEITPQSQHQLLSVDEWMTILGAFHQVGVKAVRLTGGEPLLYPHIEELLA 79

Query: 106 ALNKRGFE--IAVETNGTIEPPQG 127
            + + G+   I++ TNG++  P+ 
Sbjct: 80  RIKQTGWFEDISMTTNGSLLAPRA 103


>gi|206577451|ref|YP_002239375.1| glycyl-radical enzyme activating protein family [Klebsiella
           pneumoniae 342]
 gi|288936226|ref|YP_003440285.1| glycyl-radical enzyme activating protein family [Klebsiella
           variicola At-22]
 gi|290510719|ref|ZP_06550089.1| pyruvate formate-lyase 2-activating enzyme [Klebsiella sp. 1_1_55]
 gi|206566509|gb|ACI08285.1| glycyl-radical enzyme activating protein family [Klebsiella
           pneumoniae 342]
 gi|288890935|gb|ADC59253.1| glycyl-radical enzyme activating protein family [Klebsiella
           variicola At-22]
 gi|289777435|gb|EFD85433.1| pyruvate formate-lyase 2-activating enzyme [Klebsiella sp. 1_1_55]
          Length = 291

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 45/137 (32%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS--------------AQCRF 49
           IF     +L  G+G       VF  F GC        +  S               +C  
Sbjct: 23  IFNLQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIQTLRRESKCLRCTR 77

Query: 50  CDTDFV----GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
           C  D      G     G    +D L   + +  +     G    L+GGE L+Q       
Sbjct: 78  CQQDVAECPSGAWEQIGRDVTLDNLLQEVLKDEVFFRASGGGVTLSGGEVLMQAGFAARF 137

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L + G   A+ET G
Sbjct: 138 LQRLRQWGIRTAIETAG 154


>gi|194292778|ref|YP_002008685.1| nitrite reductase heme d1 biosynthesis protein [Cupriavidus
           taiwanensis LMG 19424]
 gi|193226682|emb|CAQ72633.1| nitrite reductase heme d1 biosynthesis protein [Cupriavidus
           taiwanensis LMG 19424]
          Length = 387

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 26/117 (22%)

Query: 33  NLWSGREQDRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
            +       R +  CR C     DTDF G   T          A+ +       E     
Sbjct: 26  PVVIWNLIRRCNLNCRHCYATSADTDFKGELDT----------AEALAVLGQLREARVPA 75

Query: 88  CVLTGGEPLLQVDVPLIQALNKR--GFEIAVETNGTI--------EPPQGIDWICVS 134
            +L+GGEPLL+ D+  I A + R  GF +++ +NGT+            G D++ VS
Sbjct: 76  LILSGGEPLLRPDLYQI-AGHARALGFHLSLSSNGTLLDAGHAARLAAAGFDYVGVS 131


>gi|58580682|ref|YP_199698.1| molybdenum cofactor biosynthesis protein A [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|188578341|ref|YP_001915270.1| molybdenum cofactor biosynthesis protein A [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|58425276|gb|AAW74313.1| molybdenum cofactor biosynthesis protein A [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|188522793|gb|ACD60738.1| molybdenum cofactor biosynthesis protein A [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 343

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
           +C +C   D            R + DQL  L+      G  + R   LTGGEPLL+ D+P
Sbjct: 36  RCGYCMPADRVPDDYGFDSRQRLSFDQLETLVRAFVSVGVTKVR---LTGGEPLLRRDLP 92

Query: 103 -LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVSPKAGCDLKIKGGQELKLV 152
            LI  L    G E +A+ TNGT+   Q +         I VS  A      +     +  
Sbjct: 93  SLIARLTAIEGIEDLALTTNGTLLARQAVALRQAGLRRITVSMDALEPALFRRMNGDRGE 152

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL 187
             +V           F+R  +  +    + E+  L
Sbjct: 153 IARVLAGIAAAEQAGFQRLKINCVVQRGVNEDQVL 187


>gi|150387904|ref|YP_001317953.1| radical SAM domain-containing protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149947766|gb|ABR46294.1| Radical SAM domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 335

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 44  SAQCR-FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101
           +  C  +CD  +           N ++   LI+E  + G    +  + +GGEPL++ D+ 
Sbjct: 8   TNHCNMYCDHCYRDSGVKGSSELNTEEGKALIDEIVLAG---FKIMIFSGGEPLMREDLF 64

Query: 102 PLIQALNKRGFEIAVETNGTIEPPQ 126
            LI     RG    + TNGT   P 
Sbjct: 65  ELIAYAKDRGLRPVLGTNGTFITPA 89


>gi|331085609|ref|ZP_08334693.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330407496|gb|EGG86998.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 176

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 19/88 (21%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            GC              C+ C       +   G  +  D L  +IEE  +          
Sbjct: 31  QGCP-----------HHCQGCHNPETW-EFDGGTWWMTDDLVKVIEENPLAKG-----VT 73

Query: 90  LTGGEPLLQVD--VPLIQALNKRGFEIA 115
            +GGEP  Q +    L   L  RG+E+A
Sbjct: 74  FSGGEPFSQAEAFAELAGKLKNRGYEVA 101


>gi|307353809|ref|YP_003894860.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanoplanus petrolearius DSM 11571]
 gi|307157042|gb|ADN36422.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanoplanus petrolearius DSM 11571]
          Length = 252

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 48/142 (33%), Gaps = 34/142 (23%)

Query: 21  GRV--AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           GR    VF R  GC +           +C +C         T      +D++ D+I +  
Sbjct: 18  GRAVCTVFFR--GCPV-----------RCYYC---HNREIQTGEELREIDEIEDMIRQSR 61

Query: 79  ITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQG-------ID 129
           +         + +GGE  +Q    + L +   K    + V+TNG              +D
Sbjct: 62  LAISG----VIFSGGEATMQKEGLMELARRCRKMNLAVGVQTNGVFPDTLKEMIDEGLLD 117

Query: 130 WICVSPK---AGCDLKIKGGQE 148
            + +  K         +K G E
Sbjct: 118 LVHLDIKTRWEHYPRMLKVGDE 139


>gi|300691998|ref|YP_003752993.1| molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum
           PSI07]
 gi|299079058|emb|CBJ51720.1| Molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum
           PSI07]
          Length = 387

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 57/136 (41%), Gaps = 25/136 (18%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  ++ +     + +++  +       G ++ R   LTGGE
Sbjct: 66  DRCNFRCVYCMPKDVFDKDYRFLRHS--ELLSFEEIERIARLFIEHGVEKIR---LTGGE 120

Query: 95  PLLQVDV----PLIQALNKRG---FEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ D+     ++  L+ R     ++ + TNG +           G+  + VS  A  D
Sbjct: 121 PLLRKDIERLVEMLARLHTRDGKPLDLTLTTNGALLARKAQSLKDAGLTRVTVSLDAIDD 180

Query: 141 LKIKGGQELKLVFPQV 156
              +   ++     +V
Sbjct: 181 ATFRRMNDVDFAVGEV 196


>gi|322832184|ref|YP_004212211.1| pyruvate formate-lyase activating enzyme [Rahnella sp. Y9602]
 gi|321167385|gb|ADW73084.1| pyruvate formate-lyase activating enzyme [Rahnella sp. Y9602]
          Length = 265

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 57/181 (31%), Gaps = 38/181 (20%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G   NVD L   +       
Sbjct: 44  VF--FQGC-----------LMRCMYCHNRDT----WDTHGGKEINVDDLMKEVVTYRHFM 86

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKA 137
              G     +GGE +LQ +      +A  K G    ++TNG        ID  + VS   
Sbjct: 87  NASGGGVTASGGEAILQAEFVRDWFRACQKEGINTCLDTNGFVRRYDPVIDELLDVSDLV 146

Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197
             DLK            Q  V   N+   DF R+          + N    I Y    P 
Sbjct: 147 MLDLKQMNDD-----IHQNLVGVSNHRTLDFARY--------LAKRNQRTWIRYVVV-PG 192

Query: 198 W 198
           W
Sbjct: 193 W 193


>gi|304408371|ref|ZP_07390018.1| Radical SAM domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304342660|gb|EFM08507.1| Radical SAM domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 380

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 40  QDRLSAQCRFC----DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
            D  + +C FC    DT +   +  +    + +++ L   I++  +   +     +LTGG
Sbjct: 32  SDICNYRCSFCHIWGDTGWALKEPQRVIREQLDIEVLKKFIDQ--VPKGRNPIGVILTGG 89

Query: 94  EPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           E +L      L+  L  +   + V TNG++
Sbjct: 90  EVMLYKHFEELVTHLRSKRMNVYVNTNGSL 119


>gi|227327963|ref|ZP_03831987.1| putative pyruvate formate-lyase activating enzyme [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 316

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 46  QCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102
            CR C+T    G     G    V +L ++I + +      G    L+GGE  LQ D  V 
Sbjct: 97  GCRKCETVCLSGALDVIGQEMTVTELMEIIMQDYPFYVSSGGGVTLSGGEMSLQTDFAVE 156

Query: 103 LIQALNKRGFEIAVETNGT 121
           L+ A  +     AVET GT
Sbjct: 157 LLTACKRMMINTAVETQGT 175


>gi|71907723|ref|YP_285310.1| radical SAM family protein [Dechloromonas aromatica RCB]
 gi|71847344|gb|AAZ46840.1| Radical SAM [Dechloromonas aromatica RCB]
          Length = 264

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 21/97 (21%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
            SGC +           +C +C   DT +    GT     +V  LAD+   +     + G
Sbjct: 49  LSGCPM-----------RCLYCHNPDT-WHRQDGTLTPVEDV--LADIAGYRGFIRSQGG 94

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
               L+GGEPL+Q      +++     G   A++T+G
Sbjct: 95  --VTLSGGEPLVQPKFCKAILRGCKAMGLHTALDTSG 129


>gi|311895173|dbj|BAJ27581.1| hypothetical protein KSE_17570 [Kitasatospora setae KM-6054]
          Length = 341

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 38  CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLECG------APMVSIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  +++ L +R   + + TN  +   + +D    SP     + I G +E
Sbjct: 80  GGEPLMHPQIDEIVRQLVERRKYVFLCTN-ALLLRKKLDKFTPSPYFTFAVHIDGLEE 136


>gi|303248585|ref|ZP_07334841.1| glycyl-radical enzyme activating protein family [Desulfovibrio
           fructosovorans JJ]
 gi|302490026|gb|EFL49948.1| glycyl-radical enzyme activating protein family [Desulfovibrio
           fructosovorans JJ]
          Length = 320

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 33/107 (30%), Gaps = 13/107 (12%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCD----TDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
            RF+     +          C  C     T + G     G      ++ D +        
Sbjct: 88  IRFA-----ANGTVVIDREACDLCGECVATCYAGSMTIVGRYLTPGEVLDEVCRDAKFYT 142

Query: 83  KEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETNGTIEPPQ 126
             G     +GGEP LQ+D  L   L     RG   A+ET G      
Sbjct: 143 VSGGGVTFSGGEPTLQLDF-LRACLREAKARGLHTAIETCGHAPWTS 188


>gi|323526884|ref|YP_004229037.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp.
           CCGE1001]
 gi|323383886|gb|ADX55977.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp.
           CCGE1001]
          Length = 369

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 25/136 (18%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +  +     + +++  L       G ++ R   LTGGE
Sbjct: 45  DRCNFRCVYCMPRAVFDKDYAFLPHS--ALLSFEEIERLARLFVAHGVEKIR---LTGGE 99

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ ++  LI+ L++      R  ++ + TNG++           G+  + VS  A  D
Sbjct: 100 PLLRKNLEFLIERLSQLITPAGRPLDLTLTTNGSLLARKARSLKDAGLSRVTVSLDALDD 159

Query: 141 LKIKGGQELKLVFPQV 156
              +   +       V
Sbjct: 160 TLFRRMNDADFAVADV 175


>gi|239905241|ref|YP_002951980.1| hypothetical protein DMR_06030 [Desulfovibrio magneticus RS-1]
 gi|239795105|dbj|BAH74094.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 448

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 15/103 (14%)

Query: 31  GCNLWSGREQDRLSAQCR-----------FCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G   +     C             C   F           ++  +A  + +   
Sbjct: 73  GCPYVCGLCPEHHQRTCTVVLEVTGRCNLGCPVCFADAGSASAPDPSLADIAARLVQARQ 132

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNG 120
                     ++GGEP ++ D+P ++ A    GF  + + TNG
Sbjct: 133 QAGPANLQ--ISGGEPTMRADLPDIVAAAKAAGFPFVQLNTNG 173


>gi|225849867|ref|YP_002730101.1| heme d1 biosynthesis protein NirJ [Persephonella marina EX-H1]
 gi|225645943|gb|ACO04129.1| heme d1 biosynthesis protein NirJ [Persephonella marina EX-H1]
          Length = 362

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 20/106 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL+           C+ C   +     ++ G  ++D++   I       E   +  +L+
Sbjct: 33  CNLF-----------CQHC---YSAANLSRAGEPSIDEIRSQI---PYLKEAGVKVLILS 75

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI--CVS 134
           GGEPL++ D+  +     + GF + + TNG +   + I+ I  C S
Sbjct: 76  GGEPLIREDIFDIANLFKENGFNVTLSTNGLLIDEKNIESIKECFS 121


>gi|170722117|ref|YP_001749805.1| radical SAM domain-containing protein [Pseudomonas putida W619]
 gi|169760120|gb|ACA73436.1| Radical SAM domain protein [Pseudomonas putida W619]
          Length = 476

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 41/135 (30%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GCNL            C +C   D D    + + G + +       +E        E R
Sbjct: 110 TGCNL-----------SCTYCYKEDLD----KPSAGKKMSTATAEASVEMLLKESPDEQR 154

Query: 87  Y-CVLTGGEPLLQVDVPLIQ--------ALNKRGFEIA--VETNGTIEPPQGIDW----- 130
           Y  V  GGEPL   + PLI+           + G ++   + TN T+   + +DW     
Sbjct: 155 YSVVFFGGEPL--SNRPLIEHMVAYCERRFAEAGKQVEFIMTTNATLLTEETVDWLNAHR 212

Query: 131 --ICVS---PKAGCD 140
             + VS   PK   D
Sbjct: 213 FGLSVSIDGPKTVHD 227


>gi|108563178|ref|YP_627494.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           HPAG1]
 gi|122980501|sp|Q1CTA2|MOAA_HELPH RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|107836951|gb|ABF84820.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           HPAG1]
          Length = 321

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 61/172 (35%), Gaps = 27/172 (15%)

Query: 46  QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102
           +C++C   T              +D + + ++     G K+ R   +TGGEPLL+     
Sbjct: 24  RCQYCMPATPLNFFDNE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDE 78

Query: 103 LIQALNKRGFEIA--VETNGTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQELK 150
            I  L+    E+A  + TNG +      D        + V   S K+   LKI     LK
Sbjct: 79  FIAKLHAYNKEVALVLSTNGFLLKKMAKDLKKAGLSRVNVSLDSLKSDRVLKISQKDALK 138

Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
                +  S +  +           M     +E  +L + Y       R+ +
Sbjct: 139 NTLEGIEESLKVGLKLKLNTVV---MKSVNGDEILDL-LEYAKNR---RIQI 183


>gi|71908225|ref|YP_285812.1| GTP cyclohydrolase subunit MoaA [Dechloromonas aromatica RCB]
 gi|71847846|gb|AAZ47342.1| GTP cyclohydrolase subunit MoaA [Dechloromonas aromatica RCB]
          Length = 327

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 25/170 (14%)

Query: 41  DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR   +C +C  +DF G +  +    + D++  L+    +      R   LTGGEPL++ 
Sbjct: 23  DRCDLRCAYCMPSDFSGYEEPEH-WLSFDEIERLV---GLFARFGLRRVRLTGGEPLMRK 78

Query: 100 DVP-LIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS-----PKAGCDLKIK 144
            +  L + +    G E +++ TNGT            G+D + VS     P    +  I 
Sbjct: 79  GLAGLARRIKAIPGVEDLSLSTNGTQLRKHGQALRDAGVDRLNVSLDTLQPARFAE--IT 136

Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
               L  V     ++    IGF   + ++  + G   +E     + +C Q
Sbjct: 137 RRDALADVL--AGLATAREIGFAPIKINMVWLAGVNDDE-LEAMVDFCRQ 183


>gi|261868599|ref|YP_003256521.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413931|gb|ACX83302.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 246

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 57/180 (31%), Gaps = 45/180 (25%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G    V++L   +     
Sbjct: 21  IRFILFLQGC-----------LMRCKYCHNRDT----WDLHGGKEITVEELMKEVVTYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
                G     +GGE +LQ +      +A    G    ++TNG +        + ID   
Sbjct: 66  FMNASGGGVTASGGEAILQAEFVRDWFRACKAEGIHTCLDTNGFVRHYDHVIDELIDV-- 123

Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC 192
                  DL +   +EL     Q  +   N    +F +  LQ       + N  + I Y 
Sbjct: 124 ------TDLVLLDLKELNDKVHQNLIGVPNKRTLEFAK-YLQ-------KRNQPVWIRYV 169


>gi|257783945|ref|YP_003179162.1| (Formate-C-acetyltransferase)-activating enzyme [Atopobium parvulum
           DSM 20469]
 gi|257472452|gb|ACV50571.1| (Formate-C-acetyltransferase)-activating enzyme [Atopobium parvulum
           DSM 20469]
          Length = 294

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 40/172 (23%)

Query: 5   SIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSG------------------------- 37
            + +I  F  + G G      AVF    GCN+                            
Sbjct: 21  PVNKIIPFSLVDGPGSRT---AVF--LQGCNIRCAYCHNPETQVECISCQACVKPCPAHA 75

Query: 38  -----REQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
                 +    ++ C  CD      Q     +  +    + + ++ I+     R    +G
Sbjct: 76  LSMANGKVVWDNSICINCDNCIKVCQHKSTPKIELLSARE-VADRCISNMPFIRGITTSG 134

Query: 93  GEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
           GE +L+ D    L    N  G    +++NGTI+  +  D + +S     D+K
Sbjct: 135 GECMLRPDFLYELFTYCNAAGLSCLIDSNGTIDFTEYRDLLALSDGVMLDVK 186


>gi|251796732|ref|YP_003011463.1| radical SAM protein [Paenibacillus sp. JDR-2]
 gi|247544358|gb|ACT01377.1| Radical SAM domain protein [Paenibacillus sp. JDR-2]
          Length = 292

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C FC  T+         G  +++   + +++     +    +   
Sbjct: 15  CNL-----------ACSFCPPTERA------KGFISIEDFTERLDQIKPFTDYIYFHLK- 56

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 57  --GEPLLHPKIDQLLDISHEKGFKVNITTNGTL 87


>gi|147677220|ref|YP_001211435.1| arylsulfatase regulator [Pelotomaculum thermopropionicum SI]
 gi|146273317|dbj|BAF59066.1| arylsulfatase regulator [Pelotomaculum thermopropionicum SI]
          Length = 420

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 44/125 (35%), Gaps = 28/125 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C   F+    +  GR       + ++              L 
Sbjct: 83  CNL-----------ACEYC---FI-HDKSPAGRMTFATAKNAVDLLVERAAYPAVNITLI 127

Query: 92  GGEPLLQVDVPLIQ-----ALNKRGFEI-----AVETNGTIEPPQGIDWICVSPKAGCDL 141
           GGEPLL  +  LI+     AL   G        +V TNGT+     + +   S K G  L
Sbjct: 128 GGEPLL--EFELIKKIVPYALEAAGKRNLGVTWSVTTNGTLINEDILKFFA-SHKIGMLL 184

Query: 142 KIKGG 146
            I GG
Sbjct: 185 SIDGG 189


>gi|303229436|ref|ZP_07316226.1| molybdenum cofactor biosynthesis protein A [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515972|gb|EFL57924.1| molybdenum cofactor biosynthesis protein A [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 321

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105
           C +C       + T   ++ +  + + +       +   +   LTGGEPLL   +  L+ 
Sbjct: 24  CPYC----RPAEITPQSQHQLLSVDEWMTILGAFHQVGVKAVRLTGGEPLLYPHIEELLA 79

Query: 106 ALNKRGFE--IAVETNGTIEPPQG 127
            + + G+   I++ TNG++  P+ 
Sbjct: 80  RIKQTGWFEDISMTTNGSLLAPRA 103


>gi|281356684|ref|ZP_06243175.1| (Formate-C-acetyltransferase)-activating enzyme [Victivallis
           vadensis ATCC BAA-548]
 gi|281316811|gb|EFB00834.1| (Formate-C-acetyltransferase)-activating enzyme [Victivallis
           vadensis ATCC BAA-548]
          Length = 298

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 46/145 (31%), Gaps = 16/145 (11%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQ------GTKGGRYNVDQLADLIEEQWITGEKEG 85
           C   + +E+    + C  C  D    Q         G     ++L   +      G  + 
Sbjct: 61  CPHGAIKERTLDRSVCSGC-ADRACRQFRHSALEWAGRERTPEELEKEVLRL-SAGWDDF 118

Query: 86  RYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIE----PPQGIDWICVSPKAGC 139
                 GGEP LQ    L  I  L K     A+E+N T        + +D      KAG 
Sbjct: 119 GGVTFGGGEPTLQAPELLDCINRLKKHRIHTAIESNATTPEFPDVAREVDLAIADLKAGT 178

Query: 140 DLKIK--GGQELKLVFPQVNVSPEN 162
                   G EL  V   +  + E 
Sbjct: 179 PEVFHDCTGGELAPVLDHLAEAAER 203


>gi|56478522|ref|YP_160111.1| molybdenum cofactor biosynthesis protein A [Aromatoleum aromaticum
           EbN1]
 gi|56314565|emb|CAI09210.1| Molybdenum cofactor biosynthesis protein A [Aromatoleum aromaticum
           EbN1]
          Length = 359

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           DR + +C +C               R  +    ++         +  R   +TGGEPLL+
Sbjct: 45  DRCNFRCIYC-MPRSVFGADYPFLPRKELLSFEEITRIARRFATRGVRKIRITGGEPLLR 103

Query: 99  VDVP-LIQALNK-RGFEIAVETNGTIEP-------PQGIDWICVS 134
             V  LI+ L +    E+ + TNG + P         G+D + +S
Sbjct: 104 KHVENLIEMLAQIPDVELTLTTNGVLLPKMARTLKDAGLDRVTIS 148


>gi|238922883|ref|YP_002936396.1| pyruvate formate-lyase activating enzyme [Eubacterium rectale ATCC
           33656]
 gi|238874555|gb|ACR74262.1| pyruvate formate-lyase activating enzyme [Eubacterium rectale ATCC
           33656]
          Length = 249

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 22/109 (20%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GCN+           +C++C   DT     +          ++           
Sbjct: 26  VF--LKGCNM-----------RCKYCHNPDTWAKCGENDGAKLMTPQEVLKTAMRYKAY- 71

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG---TIEPP 125
            K+     ++GGE LLQ+D    L +   ++G    ++T+G   T+E P
Sbjct: 72  WKQTGGITVSGGEALLQIDFVTELFKLAKEKGVNTCLDTSGNPFTVEEP 120


>gi|237653116|ref|YP_002889430.1| molybdenum cofactor biosynthesis protein A [Thauera sp. MZ1T]
 gi|237624363|gb|ACR01053.1| molybdenum cofactor biosynthesis protein A [Thauera sp. MZ1T]
          Length = 359

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 22/110 (20%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D D+  +      R  +    +++    +   +  R   +TGG
Sbjct: 45  DRCNFRCVYCMPREVFGD-DYAFL-----PRRQLLSFEEILRVARLFVARGVRKIRITGG 98

Query: 94  EPLLQVDVP-LIQALNKR-GFEIAVETNGTIEP-------PQGIDWICVS 134
           EPLL+ DV  LI  L    G E+ + TNG + P         G+  + VS
Sbjct: 99  EPLLRKDVDRLIGMLAALDGVEVTLTTNGVLLPKLARRLKDAGLHRVTVS 148


>gi|222100310|ref|YP_002534878.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359]
 gi|221572700|gb|ACM23512.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359]
          Length = 355

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 48/137 (35%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQG--TKGGRYNVDQLADLIEEQW 78
           AVF  F+GCNL            C FC   D  ++   G  ++G   ++D+L ++     
Sbjct: 127 AVF--FAGCNL-----------DCLFCQNIDHKYMVKDGRISEGKVVDLDELIEVAMNPR 173

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKR--------GF----------EIAVET 118
           ++           GG+P       L   + L K+        G            I++ET
Sbjct: 174 VSC------VCFFGGDPTPWSIFALEFARKLKKKRRICWETNGLAHPRIMENMARISLET 227

Query: 119 NGTIEPPQGIDWICVSP 135
            GT+     IDW   SP
Sbjct: 228 GGTV----KIDWKAFSP 240


>gi|291287042|ref|YP_003503858.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884202|gb|ADD67902.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 424

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104
            C++C       +  +   Y    +   I E  +         ++TGGEPLL  + + LI
Sbjct: 99  NCKYCYIQPKINKRNQVTSYIETSIFAKIVE-KVANFNPNAQILVTGGEPLLHPEFLKLI 157

Query: 105 QALNKRGFEIAVETNGT 121
           + L  R     V TNG+
Sbjct: 158 EILENRKLNFQVLTNGS 174


>gi|281423385|ref|ZP_06254298.1| pyruvate formate-lyase 1-activating enzyme [Prevotella oris F0302]
 gi|281402721|gb|EFB33552.1| pyruvate formate-lyase 1-activating enzyme [Prevotella oris F0302]
          Length = 261

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 35/134 (26%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F ++ G G          RF     GC +           +C FC   DT     +  
Sbjct: 27  ESFGSVDGPG---------IRFLIFLQGCPM-----------RCLFCHNPDT----WKQD 62

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           K      D+L +   E++ +   E     ++GGE LLQ+D  + L +  + R     ++T
Sbjct: 63  KTRPMTADELLNQ-AEKYRSYWGEKGGITVSGGEALLQIDFLIELFEKAHARSINTCLDT 121

Query: 119 NGTIEPPQGIDWIC 132
           +      +   W  
Sbjct: 122 S-AQPFTRKDTWFT 134


>gi|156973834|ref|YP_001444741.1| pyruvate formate-lyase 1 activating enzyme [Vibrio harveyi ATCC
           BAA-1116]
 gi|156525428|gb|ABU70514.1| hypothetical protein VIBHAR_01544 [Vibrio harveyi ATCC BAA-1116]
          Length = 215

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 23/144 (15%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101
           +C++C   DT         G    V+++    +         G     +GGE +LQ +  
Sbjct: 2   RCKYCHNRDT----WDTHDGKEVTVEEIIAEAKTYRHFMNASGGGITCSGGEAMLQPEFV 57

Query: 102 -PLIQALNKRGFEIAVETNG-----TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155
               +A    G    ++TNG     T    + +D          DL +   + +K    Q
Sbjct: 58  RDFFRAAQAEGIHTCLDTNGYIRKHTDVIDEVLD--------ATDLVMLDLKHMKDEIHQ 109

Query: 156 VNVSPENYIGFDFERFSLQPMDGP 179
             +   N    DF R  L  +   
Sbjct: 110 EFIGVSNRRVLDFAR-YLHKIGQK 132


>gi|78221243|ref|YP_382990.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78192498|gb|ABB30265.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 356

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 17/95 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              CNL            CR C +D    +G     +  ++   L++E     +      
Sbjct: 15  TQKCNLKC--------VHCR-CSSDLTSSEGD----FTTEEGKKLLKE---IADFSKPVI 58

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           VL+GGEPL++ D+  L +     G  + + TNG +
Sbjct: 59  VLSGGEPLMRKDIFELAEYGTSLGLRMCMATNGAL 93


>gi|311895369|dbj|BAJ27777.1| putative molybdenum cofactor biosynthesis protein A [Kitasatospora
           setae KM-6054]
          Length = 343

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 5/82 (6%)

Query: 41  DRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C     G+    +G   + D+L  L   +        R   LTGGEPLL+ 
Sbjct: 37  DRCNLRCTYC-MPAEGLDWLPRGQTLDDDELLRL--ARIAVHRLGLRTLRLTGGEPLLRR 93

Query: 100 DVP-LIQALNKRGFEIAVETNG 120
            +P L+  L + G E+++ TNG
Sbjct: 94  GLPALLARLAELGAELSLTTNG 115


>gi|308182926|ref|YP_003927053.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           PeCan4]
 gi|308065111|gb|ADO07003.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           PeCan4]
          Length = 321

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 46  QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102
           +C++C   T              +D + + ++     G K+ R   +TGGEPLL+     
Sbjct: 24  RCQYCMPTTPLNFFDDE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDE 78

Query: 103 LIQALNKRGFEIA--VETNGTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQELK 150
            I  L+    E+A  + TNG +      D        + V   S K+   LKI     LK
Sbjct: 79  FIAKLHAYNKEVALVLSTNGFLLKKMAKDLKNDGLSRVNVSLDSLKSDRVLKISQKDALK 138

Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
                +  S +  +     + ++  +     +E   L + Y    
Sbjct: 139 NTLEGIEESLKVGLKL---KLNMVVIKSVNDDEILEL-LEYAKNR 179


>gi|218709044|ref|YP_002416665.1| pyruvate formate lyase-activating enzyme 1 [Vibrio splendidus
           LGP32]
 gi|218322063|emb|CAV18128.1| Pyruvate formate-lyase 1-activating enzyme [Vibrio splendidus
           LGP32]
          Length = 246

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C +C   DT     +   G    V+++ +  +      
Sbjct: 25  VF--LQGC-----------LMRCMYCHNRDT----WELHDGKEVTVEEIINEAKSYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
           +  G     +GGE +LQ +      +A    G    ++TNG
Sbjct: 68  KASGGGITCSGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNG 108


>gi|113473995|ref|YP_720056.1| hypothetical protein Tery_0075 [Trichodesmium erythraeum IMS101]
 gi|110165043|gb|ABG49583.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
          Length = 91

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 6/77 (7%)

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFER----FSLQPMDGPFLEENTNLAISYCFQ 194
                    E+KLV  +     E Y      +      LQP      +    L      +
Sbjct: 17  VPSMWTRASEIKLVI-ETGKELEFYSKILLVKNQTPVFLQPESY-NRDFTLPLVQKLLRE 74

Query: 195 NPKWRLSVQTHKFIGIR 211
               RLS+Q HK++GI+
Sbjct: 75  YSHCRLSIQLHKYLGIK 91


>gi|328956156|ref|YP_004373489.1| pyruvate formate-lyase activating enzyme [Coriobacterium glomerans
           PW2]
 gi|328456480|gb|AEB07674.1| pyruvate formate-lyase activating enzyme [Coriobacterium glomerans
           PW2]
          Length = 265

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 24/90 (26%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VFC   GC +           +C +C   DT  V      G    V+ L +  E      
Sbjct: 40  VFC--QGCPM-----------RCAYCHNPDTWRV----DSGASVTVEHLVEEFESNR--S 80

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNK 109
             +     ++GGEPLLQ D    L  A++ 
Sbjct: 81  FYKTGGITVSGGEPLLQPDFVGDLFGAMHD 110


>gi|323494775|ref|ZP_08099874.1| pyrroloquinoline quinone biosynthesis protein PqqE [Vibrio
           brasiliensis LMG 20546]
 gi|323310968|gb|EGA64133.1| pyrroloquinoline quinone biosynthesis protein PqqE [Vibrio
           brasiliensis LMG 20546]
          Length = 371

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 21/137 (15%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   +    C +C   TD     G K    N +Q   ++E+    G  +  +  
Sbjct: 10  PLWLLAELTYQCPLHCAYCSNPTDL----GDKANELNTEQWFSVLEQARKLGSVQLGF-- 63

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
            +GGEPLL+ D+  L++     GF   + T+G          I ++ K    LK  G   
Sbjct: 64  -SGGEPLLRKDLEQLVERGRSLGFYTNLITSG----------IGLTDKRIKRLKQAGLDH 112

Query: 149 LKLVFPQVNVSPENYIG 165
           +++ F   +    + I 
Sbjct: 113 IQISFQAADPELNDAIA 129


>gi|304558306|gb|ADM40970.1| Pyruvate formate-lyase activating enzyme [Edwardsiella tarda
           FL6-60]
          Length = 291

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 53/159 (33%), Gaps = 26/159 (16%)

Query: 22  RVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-------DTDFVGIQGTKGG 63
           R  VF  F GC        +           R   +C  C       D    G     G 
Sbjct: 38  RSVVF--FKGCPHRCPWCANPESISPAPQTVRREQRCLHCTPCLNDADECPSGAMERIGR 95

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGT 121
              + QL   + +  +     G    L+GGE LLQ       +  L + G   A+ET G 
Sbjct: 96  TVTLAQLEAEVMKDVVFFRSSGGGVTLSGGEVLLQAAFATRFLTRLRRLGVHCALETAGD 155

Query: 122 IEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
               + +    +  +   DLKI    +  + L+L  P+ 
Sbjct: 156 GPASRLLPLASLCDEVLFDLKIMDAERSARLLRLNLPRA 194


>gi|224826786|ref|ZP_03699886.1| coenzyme PQQ biosynthesis protein E [Lutiella nitroferrum 2002]
 gi|224601006|gb|EEG07189.1| coenzyme PQQ biosynthesis protein E [Lutiella nitroferrum 2002]
          Length = 381

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 30  SGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            G  LW   E   R   +C +C+      + T+    + ++   ++ E    G  +  + 
Sbjct: 13  QGKPLWLSLELTYRCPLKCSWCNNPLDFDKYTEHE-LSTEEWKRVLAEARELGALQLGF- 70

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
             TGGEPL + D+  L+   ++ GF   + T+G
Sbjct: 71  --TGGEPLQRPDLEELVAYADELGFYTNLITSG 101


>gi|323144590|ref|ZP_08079178.1| pyruvate formate-lyase 1-activating enzyme [Succinatimonas hippei
           YIT 12066]
 gi|322415599|gb|EFY06345.1| pyruvate formate-lyase 1-activating enzyme [Succinatimonas hippei
           YIT 12066]
          Length = 251

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 34/120 (28%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F ++ G G          RF     GC             +C++C   D+     +  
Sbjct: 10  ETFGSVDGPG---------VRFVIFMQGC-----------RMRCKYCHNPDS----WKIN 45

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
            G     D++ +          K+G    ++GGEPLLQ+D    L +   K G    ++T
Sbjct: 46  SGEEKTSDEVLNYALRYRNYWGKDGG-ITVSGGEPLLQIDFITELFKKAKKEGVHTTIDT 104


>gi|294501748|ref|YP_003565448.1| molybdenum cofactor biosynthesis protein A [Bacillus megaterium QM
           B1551]
 gi|294351685|gb|ADE72014.1| molybdenum cofactor biosynthesis protein A [Bacillus megaterium QM
           B1551]
          Length = 338

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 33/129 (25%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  F+  +       + D+L  L     + G K+ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGADYPFLPAE----NILSFDELERLTRLFALLGVKKVR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNK-RGF-EIAVETNGTIEP-------PQGIDWICVSPKAGCDLK 142
           GEPLL+  +P LI  L +  G  +IA+ TNG++           G+  + VS        
Sbjct: 75  GEPLLRKGLPDLINRLKQIEGIDDIAITTNGSLLKKHAEALSKAGLSRVTVS-------- 126

Query: 143 IKGGQELKL 151
           +    E++ 
Sbjct: 127 LDSLDEVRF 135


>gi|224371823|ref|YP_002605987.1| putative heme biosynthesis protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223694540|gb|ACN17823.1| putative heme biosynthesis protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 333

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 25/115 (21%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            + CNL           +C+ C   ++          ++  +   +              
Sbjct: 21  LTKCNL-----------RCKHC---YINRDEHGRETLDIGTIKAWLA--LFLDRAPDTNL 64

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNGTIE-------PPQGIDWICVS 134
           +  GGEP L  D+ P ++A  + GF  I ++TNG +         P+ +D+I  S
Sbjct: 65  IFLGGEPTLHPDLAPAVRAARQMGFSSITIDTNGYLFHDILEKITPEDVDFISFS 119


>gi|256833419|ref|YP_003162146.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Jonesia denitrificans DSM 20603]
 gi|256686950|gb|ACV09843.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Jonesia denitrificans DSM 20603]
          Length = 232

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 26/130 (20%)

Query: 17  GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           G  A    +F    GC             +C +C  ++  I   K G    +Q+   + +
Sbjct: 27  GKFA--AVLF--LQGCP-----------WRCTYC-HNYSIIDAKKPGVIPWEQVVHTLTQ 70

Query: 77  QWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE-----PPQGIDW 130
           +    +      V +GGEP  Q   V   + + + GF +   T G            +DW
Sbjct: 71  RQGLLDG----VVFSGGEPTRQIAVVDAARRVKEMGFAVGFHTGGQYPKRIESLLPLLDW 126

Query: 131 ICVSPKAGCD 140
           + +  KA  +
Sbjct: 127 VGLDIKAPSE 136


>gi|330898849|gb|EGH30268.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 372

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 27  CRFSGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
            R     LW   E   R   QC +C       +  +G   + +Q   +++E    G  + 
Sbjct: 2   VRL---PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELSTEQWFKVMQEAREMGAAQ- 55

Query: 86  RYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
                +GGEPL+ Q    LI    + GF   + T+G
Sbjct: 56  --IGFSGGEPLVRQDLAELIAEARRLGFYTNLITSG 89


>gi|327482183|gb|AEA85493.1| heme d1 biosynthesis protein NirJ [Pseudomonas stutzeri DSM 4166]
          Length = 393

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 14/111 (12%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            +       R +  CR C               +  +   +I++    G    R  +L+G
Sbjct: 30  PVVIWNLLRRCNLTCRHC--YATSADSEFRDELDTAEALRVIDDLHEAG---VRVLILSG 84

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGI--------DWICVS 134
           GEPLL+ D+  L      + F +A+ TNGT+     I        D++ +S
Sbjct: 85  GEPLLRGDIFQLADYARDKSFFVALSTNGTLIDEGNIARIAAARFDYVGIS 135


>gi|254508526|ref|ZP_05120644.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           16]
 gi|219548551|gb|EED25558.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           16]
          Length = 220

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 48/148 (32%), Gaps = 25/148 (16%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            GC             +C +C   DT         G    VD++ +  +         G 
Sbjct: 2   QGC-----------LMRCMYCHNRDT----WDTHGGKEVTVDEIINEAKSYRHFMNASGG 46

Query: 87  YCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKI 143
               +GGE +LQ +      +A    G    ++TNG I      ID +        DL +
Sbjct: 47  GVTCSGGEAMLQPEFVRDFFRAAQSEGIHTCLDTNGYIRKHTDVIDEVL----EATDLVM 102

Query: 144 KGGQELKLVFPQVNVSPENYIGFDFERF 171
              + +K       +   N    DF R+
Sbjct: 103 LDLKHMKDEIHHDFIGVSNKRTLDFARY 130


>gi|291528757|emb|CBK94343.1| pyruvate formate-lyase 1-activating enzyme [Eubacterium rectale
           M104/1]
          Length = 249

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 22/109 (20%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GCN+           +C++C   DT     +          ++           
Sbjct: 26  VF--LKGCNM-----------RCKYCHNPDTWAKCGENDGAKLMTPQEVLKTAMRYKAY- 71

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG---TIEPP 125
            K+     ++GGE LLQ+D    L +   ++G    ++T+G   T+E P
Sbjct: 72  WKQTGGITVSGGEALLQIDFVTELFKLAKEKGVNTCLDTSGNPFTVEEP 120


>gi|126179503|ref|YP_001047468.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanoculleus marisnigri JR1]
 gi|125862297|gb|ABN57486.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanoculleus marisnigri JR1]
          Length = 232

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 36/104 (34%), Gaps = 24/104 (23%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           GR A  VF R  GC            A+C +C               + D++  +I E  
Sbjct: 18  GRAACTVFLR--GCP-----------ARCFYC---HNIAIQDGEDLRDADEIIAMIRESR 61

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR--GFEIAVETNG 120
                     V +GGEP LQ       A   R  G  + + TNG
Sbjct: 62  TVAGA----VVFSGGEPTLQGQALAHLAAAARNMGLSVGLHTNG 101


>gi|310777957|ref|YP_003966290.1| pyruvate formate-lyase activating enzyme [Ilyobacter polytropus DSM
           2926]
 gi|309747280|gb|ADO81942.1| pyruvate formate-lyase activating enzyme [Ilyobacter polytropus DSM
           2926]
          Length = 244

 Score = 45.4 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 33/133 (24%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF    GC L           +C++C               + ++ A+ I ++    +  
Sbjct: 26  VF--TQGCPL-----------RCKYC----HNPDTWHMPDASYEEDANYIVKEISRYKPF 68

Query: 85  GRY---CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI------EPPQGIDWI-- 131
            R      L+GGEP +Q +    L +   +     AV+T+G        E  + +D +  
Sbjct: 69  FRNGGGMTLSGGEPFMQAEFAKELFRLCKENDINTAVDTSGIYLNDTVKEALEYVDLVLL 128

Query: 132 ---CVSPKAGCDL 141
              C+ P+   DL
Sbjct: 129 DIKCIDPEIYKDL 141


>gi|294666547|ref|ZP_06731788.1| molybdenum cofactor biosynthesis protein A [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292603691|gb|EFF47101.1| molybdenum cofactor biosynthesis protein A [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 343

 Score = 45.4 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 16/102 (15%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
           +C +C   D            R + DQL  L+      G  + R   LTGGEPLL+ D+P
Sbjct: 36  RCGYCMPADRVPDDYGFDSQQRLSFDQLETLVRAFVSVGVTKVR---LTGGEPLLRRDLP 92

Query: 103 -LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVS 134
            LI  L    G E +A+ TNGT+   Q +         I VS
Sbjct: 93  SLIARLTAIEGIEDLALTTNGTLLARQAVALRQAGLRRITVS 134


>gi|294627927|ref|ZP_06706506.1| molybdenum cofactor biosynthesis protein A [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292597841|gb|EFF41999.1| molybdenum cofactor biosynthesis protein A [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
          Length = 343

 Score = 45.4 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 16/102 (15%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
           +C +C   D            R + DQL  L+      G  + R   LTGGEPLL+ D+P
Sbjct: 36  RCGYCMPADRVPDDYGFDSQQRLSFDQLETLVRAFVSVGVTKVR---LTGGEPLLRRDLP 92

Query: 103 -LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVS 134
            LI  L    G E +A+ TNGT+   Q +         I VS
Sbjct: 93  SLIARLTAIEGIEDLALTTNGTLLARQAVALRQAGLRRITVS 134


>gi|220929087|ref|YP_002505996.1| radical SAM protein [Clostridium cellulolyticum H10]
 gi|219999415|gb|ACL76016.1| Radical SAM domain protein [Clostridium cellulolyticum H10]
          Length = 438

 Score = 45.4 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 23/103 (22%)

Query: 32  CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           CNL            C  C  D+  +  +       N++Q+  ++ E         R  V
Sbjct: 115 CNL-----------NCHHCYNDSHAINYEP------NLEQIHSVVNEL---SSTRLRNIV 154

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           +TGGEPL++ D+  +I  L    F + + TNGT+   Q I W+
Sbjct: 155 VTGGEPLMREDLKTIIGWLRPLTFNLTLATNGTLINEQNIPWL 197


>gi|115372634|ref|ZP_01459941.1| tungsten-containing aldehyde ferredoxin oxidoreductase cofactor
           modifying protein, putative [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823866|ref|YP_003956224.1| radical sam domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370355|gb|EAU69283.1| tungsten-containing aldehyde ferredoxin oxidoreductase cofactor
           modifying protein, putative [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396938|gb|ADO74397.1| Radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 346

 Score = 45.4 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 26/137 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL      +         D         K  R +      +++E   + E      V++
Sbjct: 34  CNLDCITCWNYAP------DLAQPKPVSWKRQRMDAATFHRMVDE---SAEAGAERIVIS 84

Query: 92  GG-EPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
           GG EP    D+   I  +  RG  + V +NGT+      DW           +++  Q  
Sbjct: 85  GGGEPFTHPDIYSFIAKVKARGLRLTVISNGTL-----CDW----------ERVRELQVD 129

Query: 150 KLVFPQVNVSPENYIGF 166
           +L+    + SPE Y+ +
Sbjct: 130 QLLLNMASASPETYVAY 146


>gi|26990174|ref|NP_745599.1| radical SAM domain protein [Pseudomonas putida KT2440]
 gi|24985113|gb|AAN69063.1|AE016539_4 hypothetical protein PP_3461 [Pseudomonas putida KT2440]
          Length = 476

 Score = 45.4 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 31/116 (26%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GCNL            C +C   D D    + + G + +       +E        E R
Sbjct: 110 TGCNL-----------SCTYCYKEDLD----KPSAGKKMSTTTAEASVEMLLKESPNEQR 154

Query: 87  Y-CVLTGGEPLLQVDVPLIQ--------ALNKRGFEIA--VETNGTIEPPQGIDWI 131
           Y  V  GGEPL   + PLI+           + G ++   + TN T+   + IDW+
Sbjct: 155 YSVVFFGGEPL--SNRPLIEHMVAYCERRFAEAGKQVEFIMTTNATLLTEEIIDWL 208


>gi|21241853|ref|NP_641435.1| molybdenum cofactor biosynthesis protein A [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|24211979|sp|Q8PNH1|MOAA_XANAC RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|21107234|gb|AAM35971.1| molybdenum cofactor biosynthesis protein A [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 334

 Score = 45.4 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 16/102 (15%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
           +C +C   D            R + DQL  L+      G  + R   LTGGEPLL+ D+P
Sbjct: 27  RCGYCMPADRVPDDYGFDSQQRLSFDQLETLVRAFVSVGVTKVR---LTGGEPLLRRDLP 83

Query: 103 -LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVS 134
            LI  L    G E +A+ TNGT+   Q +         I VS
Sbjct: 84  SLIARLTAIEGIEDLALTTNGTLLARQAVALRQAGLRRITVS 125


>gi|330810031|ref|YP_004354493.1| heme d1 biosynthesis protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378139|gb|AEA69489.1| heme d1 biosynthesis protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 392

 Score = 45.4 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 17/101 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         +      D+ F     T      +D L D             R  +L+
Sbjct: 39  CNLTCKHCYATSA------DSVFRDELDTPAALQVIDDLHDA----------GVRVLILS 82

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           GGEPLL+ D+  L      +GF +A+ TNGT+     I+ I
Sbjct: 83  GGEPLLREDLFQLSAYARDKGFFLALSTNGTLIDASNIEQI 123


>gi|255658493|ref|ZP_05403902.1| molybdenum cofactor biosynthesis protein A [Mitsuokella multacida
           DSM 20544]
 gi|260849292|gb|EEX69299.1| molybdenum cofactor biosynthesis protein A [Mitsuokella multacida
           DSM 20544]
          Length = 329

 Score = 45.4 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +CR+C    +  +G +  R+ ++ +  +++           R   LTGGEPL++ 
Sbjct: 18  DRCNLRCRYC----MPEEGVEKLRHEDILRFDEIVRIVRALASLGVRKVRLTGGEPLIRR 73

Query: 100 DV-PLIQALNK-RGFE-IAVETNGTIEPPQGIDWI 131
           ++  L++ ++   G E IA+ TNG +      D +
Sbjct: 74  NIVELVREIHAVPGIETIAMTTNGVMLADMAEDLV 108


>gi|313898792|ref|ZP_07832326.1| putative pyruvate formate-lyase 1-activating enzyme [Clostridium
           sp. HGF2]
 gi|312956374|gb|EFR38008.1| putative pyruvate formate-lyase 1-activating enzyme [Clostridium
           sp. HGF2]
          Length = 298

 Score = 45.4 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 59  GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAV 116
             +G    ++ +   +       E  G     +GGEP +Q +    L++A  + GF  AV
Sbjct: 98  AFQGKEMTLEAIMAELCRDRDYYENSGGGITFSGGEPFVQQEALWELLRACKQEGFHTAV 157

Query: 117 ETNG 120
           ET G
Sbjct: 158 ETTG 161


>gi|160902443|ref|YP_001568024.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Petrotoga mobilis SJ95]
 gi|160360087|gb|ABX31701.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Petrotoga mobilis SJ95]
          Length = 213

 Score = 45.4 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 24/123 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C    +      G   + + +   ++ +    E      V+T
Sbjct: 27  CNL-----------RCPYCHNPELVF--FTGKLVDEENIFSYLKSRVGVVEG----VVIT 69

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGC-DLKIK 144
           GGEP LQ D+   I  +   GF + ++TNG            +D I +  K  C   K  
Sbjct: 70  GGEPTLQKDLRDFIIKIKDMGFLVKLDTNGHNPKVLNTVIDIVDMIAIDIKTSCQKYKTI 129

Query: 145 GGQ 147
           GG 
Sbjct: 130 GGN 132


>gi|110637727|ref|YP_677934.1| GTP cyclohydrolase subunit MoaA [Cytophaga hutchinsonii ATCC 33406]
 gi|110280408|gb|ABG58594.1| GTP cyclohydrolase subunit MoaA [Cytophaga hutchinsonii ATCC 33406]
          Length = 317

 Score = 45.4 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LI 104
            C +C T       +      V++   +I+   I  +   +   LTGGEPLL  ++P LI
Sbjct: 29  ACVYCVTPGAIHTPSAEKVLTVEEYLSIIKN--IHSQVGLKTIRLTGGEPLLFKELPVLI 86

Query: 105 QALNKRGFE-IAVETNG 120
           + +   G   I + TNG
Sbjct: 87  KGIKALGITDIKLTTNG 103


>gi|18977826|ref|NP_579183.1| hypothetical protein PF1454 [Pyrococcus furiosus DSM 3638]
 gi|18893579|gb|AAL81578.1| hypothetical protein PF1454 [Pyrococcus furiosus DSM 3638]
          Length = 588

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           NL +    +R +  C +C   F   +G       ++Q+  ++                TG
Sbjct: 141 NLLNIVLTNRCNLSCWYC--FFYAREGEPVYEPTLEQIRMMLRNAKKENPIGANAVQFTG 198

Query: 93  GEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
           GEP L+ D+  +I+   + G+  + + T+G
Sbjct: 199 GEPTLRDDLIEIIKIAKEEGYDHVQLNTDG 228


>gi|326388685|ref|ZP_08210278.1| radical SAM domain-containing protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206936|gb|EGD57760.1| radical SAM domain-containing protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 424

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 14/104 (13%)

Query: 30  SGCNLWSGREQDRLSAQCRF-------CDTD----FVGIQGTKGGRYNVDQLADLIEEQW 78
           +GC    G   D     C         CD      F       G    + ++ + + +  
Sbjct: 35  AGCPFDCGLCPDHEQHSCLAIIEVTEACDLACPVCFADAADRNGRHRPLAEI-ETMLDVL 93

Query: 79  ITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNG 120
           +  E E     ++GGEP L  +   ++ A+ +R    + + TNG
Sbjct: 94  VESEGEPDLVQISGGEPTLHPEFFAILDAVKRRPIRHVMINTNG 137


>gi|91773213|ref|YP_565905.1| radical SAM family Fe-S protein [Methanococcoides burtonii DSM
           6242]
 gi|91712228|gb|ABE52155.1| Radical SAM family protein [Methanococcoides burtonii DSM 6242]
          Length = 346

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 21/95 (22%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFV--GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           GCNL            CR   T  +  G   T   ++ VD++ ++               
Sbjct: 15  GCNLAC--------VHCRGSSTSEIPEGELSTSEAKHFVDEIVEM----------GDPIL 56

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           +LTGGEPL++ DV  + +    +G  +A+ TNGT+
Sbjct: 57  ILTGGEPLVRKDVYEIARYATDKGLRVALATNGTL 91


>gi|87300730|ref|ZP_01083572.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp. WH
           5701]
 gi|87284601|gb|EAQ76553.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp. WH
           5701]
          Length = 343

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 41/131 (31%), Gaps = 41/131 (31%)

Query: 27  CRF---SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            R    + CNL            C +C                + +   L+      G  
Sbjct: 1   MRLSLTARCNL-----------ACPYC----CPDSHDPPELLTLTERVQLVSAAADLGFG 45

Query: 84  EGRYCVLTGGEPLLQV-DVPLIQALN----------KRGF-EIAVETNGTI--------E 123
             R   LTGGEPLL      L+ AL             G  EIA+ TNG +         
Sbjct: 46  RLR---LTGGEPLLHRGLEELVSALQPLRGPQASSGSPGLSEIALTTNGVLLSAQRAQGL 102

Query: 124 PPQGIDWICVS 134
              G+D I VS
Sbjct: 103 RAAGLDRITVS 113


>gi|325282230|ref|YP_004254772.1| glycyl-radical enzyme activating protein family [Odoribacter
           splanchnicus DSM 20712]
 gi|324314039|gb|ADY34592.1| glycyl-radical enzyme activating protein family [Odoribacter
           splanchnicus DSM 20712]
          Length = 260

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 36/119 (30%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFC--------------------DTDFVGIQGTKGG 63
            VF    GC L            CR+C                    D +F  I+    G
Sbjct: 22  TVF--LKGCRL-----------HCRWCHNPESQAVGTVSMKQVRKLGDREFEEIRKVGYG 68

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120
             +VD+L + I +  +  E+ G     +GGEPLLQ    L  ++A   R     ++T G
Sbjct: 69  -ISVDELVEEIAKDAVFFEESGGGVTFSGGEPLLQPVFLLECLKACKARRIHTCIDTAG 126


>gi|323697567|ref|ZP_08109479.1| Radical SAM domain protein [Desulfovibrio sp. ND132]
 gi|323457499|gb|EGB13364.1| Radical SAM domain protein [Desulfovibrio desulfuricans ND132]
          Length = 460

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 11/101 (10%)

Query: 31  GCNLWSGREQDRLSAQCR------F-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           GC L  G         C       + CD        + G     D   D ++  +   E 
Sbjct: 72  GCPLDCGLCDAHRQHTCTALIEVTWRCDLGCPVCFASSGKAAPPDPSLDALDTLFDRVEL 131

Query: 84  EGRYCVL--TGGEPLLQVDVPLIQAL-NKRGFE-IAVETNG 120
              +C +  +GGEP ++ D+P I  L   RGF  I + TNG
Sbjct: 132 ASGHCNIQLSGGEPTVREDLPEIIRLGKARGFPFIQLNTNG 172


>gi|308050261|ref|YP_003913827.1| pyruvate formate-lyase activating enzyme [Ferrimonas balearica DSM
           9799]
 gi|307632451|gb|ADN76753.1| pyruvate formate-lyase activating enzyme [Ferrimonas balearica DSM
           9799]
          Length = 246

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 36/105 (34%), Gaps = 24/105 (22%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G    V QL + +     
Sbjct: 21  IRFIAFLQGC-----------LMRCQYCHNRDT----WDLEGGKEVTVPQLMEQLVSYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI 122
             E  G     +GGE +LQ+D       A    G    ++TNG I
Sbjct: 66  FFEASGGGVTASGGEAVLQMDFVKEWFTACKAEGIHTCLDTNGLI 110


>gi|322420709|ref|YP_004199932.1| Radical SAM domain-containing protein [Geobacter sp. M18]
 gi|320127096|gb|ADW14656.1| Radical SAM domain protein [Geobacter sp. M18]
          Length = 347

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C            G     +  DL+E+    G  +       
Sbjct: 24  CNL-----------RCTTC---LSSSGEPAHGELTTAEALDLVEQVHQAGVFQ---INFG 66

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           GGEP ++ D   ++   ++RG    + TNGT+
Sbjct: 67  GGEPFMRPDFEQILATCHERGIMTCISTNGTL 98


>gi|241663687|ref|YP_002982047.1| pyrroloquinoline quinone biosynthesis protein PqqE [Ralstonia
           pickettii 12D]
 gi|240865714|gb|ACS63375.1| coenzyme PQQ biosynthesis protein E [Ralstonia pickettii 12D]
          Length = 400

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R    C FC    D+             +Q  D+  +    G  +     
Sbjct: 26  PLWLLAELTYRCPLHCAFCSNPVDYTRHD----QELTTEQWCDVFTQARALGAVQLG--- 78

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           L+GGEPLL+ D+  L+   +  GF + + T+G
Sbjct: 79  LSGGEPLLRKDLETLVAHAHGLGFYVNLVTSG 110


>gi|325925005|ref|ZP_08186428.1| GTP cyclohydrolase subunit MoaA [Xanthomonas perforans 91-118]
 gi|325544589|gb|EGD15949.1| GTP cyclohydrolase subunit MoaA [Xanthomonas perforans 91-118]
          Length = 343

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 9/83 (10%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
           +C +C   D            R + DQL  L+      G  + R   LTGGEPLL+ D+P
Sbjct: 36  RCGYCMPADRVPDDYGFDSQQRLSFDQLETLVRAFVSVGVTKVR---LTGGEPLLRRDLP 92

Query: 103 -LIQALNK-RGFE-IAVETNGTI 122
            LI  L    G E +A+ TNGT+
Sbjct: 93  SLIARLAAIEGIEDLALTTNGTL 115


>gi|168334360|ref|ZP_02692544.1| molybdopterin cofactor biosynthesis protein A, putative
           [Epulopiscium sp. 'N.t. morphotype B']
          Length = 299

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 27/112 (24%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C    VG    +     +D++  +       G  +     LT
Sbjct: 5   CNL-----------KCIYC----VGADKFEAKYLTIDEIERVANIFATLGITK---VKLT 46

Query: 92  GGEPLLQVDVP-LIQALNKRGF-EIAVETNG-------TIEPPQGIDWICVS 134
           GGEPL++ D+  +++ L   G  E+ + TNG       T     G+  I VS
Sbjct: 47  GGEPLIRSDLANIVKRLRSAGMVEVTLTTNGLLLEQKLTTLIAAGVTAINVS 98


>gi|113953519|ref|YP_732072.1| molybdenum cofactor biosynthesis protein MoaA [Synechococcus sp.
           CC9311]
 gi|113880870|gb|ABI45828.1| molybdenum cofactor biosynthesis protein MoaA [Synechococcus sp.
           CC9311]
          Length = 348

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 44/130 (33%), Gaps = 40/130 (30%)

Query: 27  CRF---SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            R    + CNL            C +C            G         LI      G  
Sbjct: 16  LRLSLTARCNL-----------SCPYC----CPESIEPPGLLTTADQLRLISAACRLGAH 60

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALN----------KRGFEIAVETNGTIEPP------- 125
             R   LTGGEPLL   + PL+ AL+           R  E+A+ TNG++          
Sbjct: 61  TLR---LTGGEPLLTERLWPLLDALSLGRQTAAHPFSRLKEVAITTNGSLLNDNKARRLR 117

Query: 126 -QGIDWICVS 134
             G+D I +S
Sbjct: 118 AAGVDRITIS 127


>gi|311281583|ref|YP_003943814.1| glycyl-radical enzyme activating protein family [Enterobacter
           cloacae SCF1]
 gi|308750778|gb|ADO50530.1| glycyl-radical enzyme activating protein family [Enterobacter
           cloacae SCF1]
          Length = 303

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 8/84 (9%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           G   +   LA+ +       +        +GGEP LQ D        L   G  + ++T 
Sbjct: 104 GEAMSSQALAERLLRDKAFYDASQGGVTFSGGEPALQADFVRETAARLRAEGVHVCLDTA 163

Query: 120 GTI------EPPQGIDWICVSPKA 137
           G +         + +D +    KA
Sbjct: 164 GHLRWEKLRPLVEAVDLVSYDFKA 187


>gi|219853188|ref|YP_002467620.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
 gi|219547447|gb|ACL17897.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
          Length = 399

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 17/112 (15%)

Query: 18  GHAG--RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE 75
             +G  R  +F        W+    DR +  C  C  +  G + T  G     +   +I+
Sbjct: 34  AFSGMYRPVIF--------WNLT--DRCNLSCNHCY-NQSGPERTTEGELTTAEALKVID 82

Query: 76  EQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           +     +      + TGGEPL++ D+  L Q    RG ++A+ TNGT+  P 
Sbjct: 83  DL---ADMGVPLILFTGGEPLMRADIWDLAQHARNRGLKMALSTNGTLITPD 131


>gi|167586605|ref|ZP_02378993.1| molybdenum cofactor biosynthesis protein A [Burkholderia ubonensis
           Bu]
          Length = 370

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 25/114 (21%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +  +      ++++  +       G ++ R   +TGGE
Sbjct: 45  DRCNFRCVYCMPRAVFDKDYPFLPHS--ALLTLEEIERIARLFVAHGVEKIR---ITGGE 99

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           PLL+ ++  LI+ L +      R  ++ + TNG++           G+  + VS
Sbjct: 100 PLLRKNLEFLIERLARLTTHDGRPLDLTLTTNGSLLARKARALKDAGLKRVTVS 153


>gi|121607765|ref|YP_995572.1| molybdenum cofactor biosynthesis protein A [Verminephrobacter
           eiseniae EF01-2]
 gi|121552405|gb|ABM56554.1| GTP cyclohydrolase subunit MoaA [Verminephrobacter eiseniae EF01-2]
          Length = 384

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 61/153 (39%), Gaps = 25/153 (16%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D ++  +    G     +++A L       G ++ R   LTGGE
Sbjct: 48  DRCNFRCNYCMPKEVFDKNYPYL--PHGALLRFEEIARLARLFLAHGVRKIR---LTGGE 102

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ ++P L+  L        +  ++ + TNG++           G++ + VS  +  +
Sbjct: 103 PLLRKNLPALVAQLAALRTADGQAPDLTLTTNGSLLARQARALRDAGLNRVTVSLDSLDE 162

Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
              +   ++     QV    E        R  +
Sbjct: 163 AVFRRMNDVDFPVAQVLAGIEAARAAGLSRIKV 195


>gi|34496868|ref|NP_901083.1| pyruvate formate lyase activating enzyme [Chromobacterium violaceum
           ATCC 12472]
 gi|34102723|gb|AAQ59088.1| pyruvate formate lyase activating enzyme [Chromobacterium violaceum
           ATCC 12472]
          Length = 259

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 30/132 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
            F   SGC             +C +C   DT     +   G + +V+Q    +       
Sbjct: 40  FFV--SGC-----------QFRCLYCHNPDT----WKLHNGRQVSVEQALSEVAPYARFL 82

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKR-GFEIAVETNG------TIEPPQGIDWIC 132
           +  G    ++GGEPL+Q +    L   + +R G   A++T G      +      +D + 
Sbjct: 83  KFAGG-VTISGGEPLMQHEFVGELFHEIKQRFGLHTALDTQGFLHERVSDAWFDDVDLVM 141

Query: 133 VSPKAGCDLKIK 144
           +  K     K +
Sbjct: 142 LDIKHSDPEKYQ 153


>gi|150389760|ref|YP_001319809.1| glycyl-radical activating family protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149949622|gb|ABR48150.1| glycyl-radical enzyme activating protein family [Alkaliphilus
           metalliredigens QYMF]
          Length = 301

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
           YN +Q+  +IE+Q I     G     +GGE  LQ D+   L+  L  +  ++A+ET+G
Sbjct: 106 YNTEQILKMIEKQEIFYRYSGGGVTFSGGEAALQADILRDLVCKLYDKAIDLAIETSG 163


>gi|296128757|ref|YP_003636007.1| Radical SAM domain protein [Cellulomonas flavigena DSM 20109]
 gi|296020572|gb|ADG73808.1| Radical SAM domain protein [Cellulomonas flavigena DSM 20109]
          Length = 345

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 22/107 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR C   +               +  ++E+    G        ++
Sbjct: 28  CNL-----------RCRHC---YSRSGPDVDEALTTALVRSVVEDAAALGYG---VLGVS 70

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGID----WICV 133
           GGEPLL   +  L++     G    V TNG +  P+ +D    W+ V
Sbjct: 71  GGEPLLHPGLGELLRTARGAGMRTTVTTNGMLLTPRRVDELAGWVDV 117


>gi|85058965|ref|YP_454667.1| pyruvate formate lyase-activating enzyme 1 [Sodalis glossinidius
           str. 'morsitans']
 gi|84779485|dbj|BAE74262.1| pyruvate formate-lyase 1 activating enzyme [Sodalis glossinidius
           str. 'morsitans']
          Length = 246

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 52/153 (33%), Gaps = 27/153 (17%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F  F GC             +C +C   DT         G    V+++   +       
Sbjct: 25  IF--FQGC-----------LMRCLYCHNRDT----WDTHGGREITVEEIMREVISYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGIDWICVSPKAG 138
              G     +GGE +LQ +      +A +  G    V+TNG        ID +       
Sbjct: 68  NASGGGVTASGGEAILQAEFVRDWFRACHAEGINTCVDTNGFVRRYDPVIDELL----EV 123

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
            DL +   +E+     Q  V   N+   DF R+
Sbjct: 124 TDLVMLDIKEMNDDIHQNLVGVSNHRTLDFARY 156


>gi|330990520|ref|ZP_08314478.1| Molybdenum cofactor biosynthesis protein A [Gluconacetobacter sp.
           SXCC-1]
 gi|329762423|gb|EGG78909.1| Molybdenum cofactor biosynthesis protein A [Gluconacetobacter sp.
           SXCC-1]
          Length = 358

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 17/108 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGT----KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
           DR + +C +C       +G        R + D++  +       G  + R   LTGGEPL
Sbjct: 32  DRCNFRCPYCMPKATYHEGFRFLGPKERLDFDEIERVARMAAELGVTKIR---LTGGEPL 88

Query: 97  LQVDVP-LIQALNKR-GFE-IAVETNGTIEPP-------QGIDWICVS 134
           L+  +P L++ L    G E +A+ TNG + P         G+  + VS
Sbjct: 89  LRPGLPDLVRRLGALPGIEDVALTTNGVLLPRFAPALRQAGLQRVTVS 136


>gi|121592520|ref|YP_984416.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Acidovorax sp. JS42]
 gi|120604600|gb|ABM40340.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Acidovorax sp. JS42]
          Length = 228

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 41/124 (33%), Gaps = 26/124 (20%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           GR+A  VFC   GC             +C +C        G              +E+  
Sbjct: 28  GRLAAVVFC--QGCP-----------WRCGYC-----HNAGLLDAAAPAPHRWGEVEQLL 69

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
            T        V +GGEP LQ  +P  +  +   GF   + T G            +DW+ 
Sbjct: 70  HTRRGLLDGVVFSGGEPTLQAALPDALARVRALGFATGLHTAGMYPERLQALLPLLDWVG 129

Query: 133 VSPK 136
           +  K
Sbjct: 130 LDIK 133


>gi|295707098|ref|YP_003600173.1| molybdenum cofactor biosynthesis protein A [Bacillus megaterium DSM
           319]
 gi|294804757|gb|ADF41823.1| molybdenum cofactor biosynthesis protein A [Bacillus megaterium DSM
           319]
          Length = 338

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 33/129 (25%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  F+  +       + D+L  L       G K+ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGADYPFLPAE----NILSFDELERLTRLFASLGVKKVR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNK-RGF-EIAVETNGTIEP-------PQGIDWICVSPKAGCDLK 142
           GEPLL+  +P LI  L +  G  +IA+ TNG++           G+  + VS        
Sbjct: 75  GEPLLRKGLPDLINRLKQIEGIDDIAITTNGSLLKKHAEALSKAGLSRVTVS-------- 126

Query: 143 IKGGQELKL 151
           +    E++ 
Sbjct: 127 LDSLDEVRF 135


>gi|283784587|ref|YP_003364452.1| putative pyruvate formate-lyase 3-activating enzyme [Citrobacter
           rodentium ICC168]
 gi|282948041|emb|CBG87605.1| putative pyruvate formate-lyase 3-activating enzyme [Citrobacter
           rodentium ICC168]
          Length = 299

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           G   NVD++   +       ++ G    L+GGEP +Q ++   L +A ++ G   AVET
Sbjct: 101 GEVRNVDEIMSTVLRDKPFYDRSGGGITLSGGEPFMQPELAAALFKASHEAGIHTAVET 159


>gi|188996400|ref|YP_001930651.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931467|gb|ACD66097.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 227

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 29/149 (19%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           FS CN+           +C +C    +  +         D   + +              
Sbjct: 25  FSKCNM-----------RCPYCYNPEIVFESEGK-----DLSENKVISFLRKRVGLLEGV 68

Query: 89  VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAG-- 138
           VL GGEP L  D+    + +   GF I ++TNG+             ID++ +  KA   
Sbjct: 69  VLCGGEPTLYKDLIGFAKKIKDLGFLIKLDTNGSNPYVVNVLIKNHLIDYVALDFKAPFG 128

Query: 139 ---CDLKIKGGQELKLVFPQVNVSPENYI 164
                 K     ++K     +  S  +Y 
Sbjct: 129 KYFSITKFNNIDKIKDSLEILVNSDIDYE 157


>gi|166031378|ref|ZP_02234207.1| hypothetical protein DORFOR_01067 [Dorea formicigenerans ATCC
           27755]
 gi|166028783|gb|EDR47540.1| hypothetical protein DORFOR_01067 [Dorea formicigenerans ATCC
           27755]
          Length = 302

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 18/172 (10%)

Query: 43  LSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
            S +C+ C    D  +   +  +G  Y V++L +++          G     +GGEPL+ 
Sbjct: 81  DSDECKLCGTCIDGCYADARVRQGTDYTVEELMEVLGRDEHYYLASGGGITFSGGEPLMY 140

Query: 99  VDVPL--IQALNKRGFEIAVETNGTIE------PPQGIDWICVSPKAGCDLKIKGGQELK 150
                   + + KRG+ I +ET G +           +D I    K     K K   EL 
Sbjct: 141 SKFIHACARKIRKRGWNILIETCGQVPQENIEMIASDVDTIYCDYKHYDPEKHK---ELT 197

Query: 151 LVFPQVNVSPENYIGFDFE-RFSLQPMDGPFLEENTNLAISYCFQNPKWRLS 201
            V  +  +S   +I   FE  F L+    P   + T  AI    +  + RLS
Sbjct: 198 GVDNRQIISNIRWIDEHFEGDFYLRYPYIPGCNDGTE-AIEQFLKFAE-RLS 247


>gi|73669704|ref|YP_305719.1| heme biosynthesis protein NirJ-2 [Methanosarcina barkeri str.
           Fusaro]
 gi|72396866|gb|AAZ71139.1| heme biosynthesis protein (NirJ-2) [Methanosarcina barkeri str.
           Fusaro]
          Length = 479

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 26/112 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C+ C   +   Q         ++   LIEE    G         +
Sbjct: 127 CNL-----------KCKHC---YQDAQNALPNELTTEESKKLIEELSDAGVA---LIAFS 169

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPP--------QGIDWICVS 134
           GGEPL++ D   ++   +K    +++ +NGT+  P         GID++ VS
Sbjct: 170 GGEPLMRKDFFEVVAHAHKHDLYVSLASNGTLITPDVARGLMNAGIDYVEVS 221


>gi|325290818|ref|YP_004266999.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966219|gb|ADY56998.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 222

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 24/124 (19%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
             VF  FSGCN   G   +               ++       +  ++   ++ +    +
Sbjct: 19  ATVF--FSGCNFRCGYCHNP------------TLVKNEGKPGISTGEVCSFLQTRQGLLD 64

Query: 83  KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI-----EPPQGIDWICVSPK 136
                  LTGGEPLL  +V  L + + + GF++ ++TNG+      E    +D+I +  K
Sbjct: 65  G----VCLTGGEPLLSGEVKTLAKGIKELGFKLKLDTNGSNLEKLKEIAPFLDYIALDIK 120

Query: 137 AGCD 140
           A  +
Sbjct: 121 AAPE 124


>gi|320096071|ref|ZP_08027672.1| pyruvate formate-lyase activating enzyme [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319977011|gb|EFW08753.1| pyruvate formate-lyase activating enzyme [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 293

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 22/104 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   +GC L           +C +C   DT F+   G      + ++L   I    
Sbjct: 69  RMTVF--LNGCPL-----------RCLYCHNPDT-FLMKDGAP---ISDEELLGRIARYR 111

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG 120
                      L+GGE L+Q      +I    + G    ++T+G
Sbjct: 112 RIFRATNGGITLSGGEVLMQPAFAKRIIHGAKQMGVHTCIDTSG 155


>gi|254418386|ref|ZP_05032110.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Brevundimonas sp. BAL3]
 gi|196184563|gb|EDX79539.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Brevundimonas sp. BAL3]
          Length = 215

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 39/124 (31%), Gaps = 24/124 (19%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
             VFC   GC             +C +C    + +        +     + +  +    +
Sbjct: 23  ATVFC--QGCP-----------WRCGYCHNPHL-LPVRGAALLSWPATLEFLRRRRGLLD 68

Query: 83  KEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPK 136
                 V +GGEP LQ   V  +  +   GF I + T G            +DW+    K
Sbjct: 69  A----VVFSGGEPTLQKGLVEAVVQVRSLGFRIGLHTGGAYPSRLARVLPLVDWVGFDVK 124

Query: 137 AGCD 140
              D
Sbjct: 125 TAFD 128


>gi|22299396|ref|NP_682643.1| moaA/nifB/pqqE family protein [Thermosynechococcus elongatus BP-1]
 gi|22295579|dbj|BAC09405.1| moaA/nifB/pqqE family protein [Thermosynechococcus elongatus BP-1]
          Length = 335

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 8/79 (10%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R +A+C FCD          G   +   +   + +    G    +Y   TGGEPLL+ D 
Sbjct: 13  RCNARCHFCD----IWALEPGKEADFSTIQTNLRDLKRLG---VKYVDFTGGEPLLRADA 65

Query: 102 PLI-QALNKRGFEIAVETN 119
           P I +   + GF  ++ TN
Sbjct: 66  PAIYREAKRLGFITSMTTN 84


>gi|295098863|emb|CBK87952.1| glycyl-radical enzyme activating protein family [Eubacterium
           cylindroides T2-87]
          Length = 303

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 50  CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
           C +  +    T    Y V++L   IEE  +  ++ G     +GGEP LQ D  L+  L +
Sbjct: 95  CPSSAIRYDST---LYTVEELISKIEEDRVFFKRNGG-VTFSGGEPFLQKDF-LVDILKE 149

Query: 110 ---RGFEIAVETN 119
              RG   A+E++
Sbjct: 150 CKKRGIHTAIESS 162


>gi|289642088|ref|ZP_06474240.1| hopanoid biosynthesis associated radical SAM protein HpnH [Frankia
           symbiont of Datisca glomerata]
 gi|289508051|gb|EFD28998.1| hopanoid biosynthesis associated radical SAM protein HpnH [Frankia
           symbiont of Datisca glomerata]
          Length = 351

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C             R +V+     +EE             + 
Sbjct: 55  CNL-----------SCTGCG-KIQHPASVLKQRMSVEDAMAAVEECG------APVVAIA 96

Query: 92  GGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+      +++ L  R   + + TNG +   + +     SP     + I G +E
Sbjct: 97  GGEPLMHPQLDEIVRQLVARKKFVLLCTNG-LLLRKKMAKFTPSPYFTFIVHIDGLRE 153


>gi|28379123|ref|NP_786015.1| formate acetyltransferase activating enzyme [Lactobacillus
           plantarum WCFS1]
 gi|254557252|ref|YP_003063669.1| formate acetyltransferase activating enzyme [Lactobacillus
           plantarum JDM1]
 gi|308181316|ref|YP_003925444.1| formate acetyltransferase activating enzyme [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|28271961|emb|CAD64866.1| formate acetyltransferase activating enzyme [Lactobacillus
           plantarum WCFS1]
 gi|254046179|gb|ACT62972.1| formate acetyltransferase activating enzyme [Lactobacillus
           plantarum JDM1]
 gi|308046807|gb|ADN99350.1| formate acetyltransferase activating enzyme [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 267

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 25  VFCRFSGCNL---WSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC L   W    + +   Q    D +    Q   G    VD +  +I +     
Sbjct: 32  VF--FKGCPLRCKWCSNPESQSGEQESMYD-EQTAKQTIVGDYMTVDDIMKVILQDKDFY 88

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           E+ G     +GGE L Q    + L +A+   G  +A ET G
Sbjct: 89  EESGGGVTFSGGEVLFQASFAIELAKAVKAAGINLACETTG 129


>gi|89092878|ref|ZP_01165830.1| pyrroloquinoline quinone biosynthesis protein PqqE [Oceanospirillum
           sp. MED92]
 gi|89082903|gb|EAR62123.1| pyrroloquinoline quinone biosynthesis protein PqqE [Oceanospirillum
           sp. MED92]
          Length = 394

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   +   QC +C           G      Q  D+  +    G  +  +   +
Sbjct: 28  PLWLLAELTYKCPLQCPYCSNPLDFADF--GSELTTQQWLDVFAQGRELGAVQLGF---S 82

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q  + LI   ++ G+   + T+G
Sbjct: 83  GGEPLVRQDLIELIGGAHEMGYYTNLITSG 112


>gi|330427842|gb|AEC19176.1| radical SAM domain-containing protein [Pusillimonas sp. T7-7]
          Length = 250

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 39/119 (32%), Gaps = 24/119 (20%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +F    GC             +C +C    +  +         D LA L   + +     
Sbjct: 43  IFV--QGCP-----------WRCGYCHNPHLQERTPHSPIPWADALALLQRRRGLVDA-- 87

Query: 85  GRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKA 137
               V +GGEP +   +   I      GF+I + + GT           +DW+    KA
Sbjct: 88  ---VVFSGGEPTMDPGLADAIGQARALGFKIGLHSGGTHPERLKSVLPLVDWVGFDVKA 143


>gi|293391864|ref|ZP_06636198.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952398|gb|EFE02517.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 246

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 56/180 (31%), Gaps = 45/180 (25%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G    V++L   +     
Sbjct: 21  IRFILFLQGC-----------LMRCKYCHNRDT----WDLHGGKEITVEELMKEVVTYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
                G     +GGE +LQ +      +A    G    ++TNG +        + ID   
Sbjct: 66  FMNATGGGVTASGGEAILQAEFVRDWFRACKAEGIHTCLDTNGFVRHYDHVIDELIDV-- 123

Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC 192
                  DL +   +EL     Q  +   N    +F ++          + N  + I Y 
Sbjct: 124 ------TDLVLLDLKELNDKVHQNLIGVPNKRTLEFAKY--------LRKRNQPVWIRYV 169


>gi|195542037|gb|ACF98232.1| putative heme D1 biosynthesis protein NirJ [uncultured bacterium
           6254]
          Length = 400

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 8/101 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            +       R +  C+ C   +         G     ++  ++++            +L+
Sbjct: 35  PVVIWNLTRRCNLTCKHC---YALSADHHYPGELEEHEMLAVLQDLK---SYGVPALILS 88

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           GGEPLL   + PL       GF + + TNGT+      D I
Sbjct: 89  GGEPLLSPHLWPLADRAKALGFHLGLSTNGTLIDAAMADRI 129


>gi|210622808|ref|ZP_03293352.1| hypothetical protein CLOHIR_01300 [Clostridium hiranonis DSM 13275]
 gi|210154025|gb|EEA85031.1| hypothetical protein CLOHIR_01300 [Clostridium hiranonis DSM 13275]
          Length = 318

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR + QC +C   DT +           + D +  LI+     G K+ ++    GGEP L
Sbjct: 18  DRCNLQCVYCKSADTKY--RPDYINDTLSADDIKFLIKAFAENGIKKIKFVGG-GGEPTL 74

Query: 98  QVDVP-LIQALNKRGFE-IAVETNGT 121
             ++P  I+     G   I++ TNGT
Sbjct: 75  HPNLPDFIKCARDCGIRDISLTTNGT 100


>gi|156936800|ref|YP_001434596.1| radical SAM domain-containing protein [Ignicoccus hospitalis
           KIN4/I]
 gi|156565784|gb|ABU81189.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 245

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 22/96 (22%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR----YNVDQLADLIEEQWITGEKEGR 86
           GCNL           +C FC   +         R    Y+  ++A+ +         E  
Sbjct: 42  GCNL-----------RCAFC---WSWKATRGIPRTAKFYSPSEVAEKLIRIARERGFELA 87

Query: 87  YCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNG 120
               +GGEP L     L  I  +N+ G    +ETNG
Sbjct: 88  RV--SGGEPTLCPTHLLKVIDLVNEAGLTFVLETNG 121


>gi|82703675|ref|YP_413241.1| radical SAM family protein [Nitrosospira multiformis ATCC 25196]
 gi|82411740|gb|ABB75849.1| Radical SAM [Nitrosospira multiformis ATCC 25196]
          Length = 369

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C                R + ++    ++E             + 
Sbjct: 38  CNLAC--------AGCG----KIDYPDHILDKRMSYEECMQAVDECG------APMVSIP 79

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+  ++P +++ +  R   + + TN  +   + ID    SP     + + G +E
Sbjct: 80  GGEPLIHKEMPEIVRGIIARRKYVYLCTN-ALLLKKKIDDYTPSPYLTFSIHLDGLKE 136


>gi|194337605|ref|YP_002019399.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Pelodictyon phaeoclathratiforme BU-1]
 gi|194310082|gb|ACF44782.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Pelodictyon phaeoclathratiforme BU-1]
          Length = 245

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 20/104 (19%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD--QLADLIEEQWITGEKEGRYC 88
           GCN            +C +C    +      GG + +    +  L+E             
Sbjct: 40  GCNF-----------RCPYCHNPELVDPVRSGGNHQIPFHDVVRLVER----NRSCLDAV 84

Query: 89  VLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIEPPQGIDWI 131
           V+TGGEP +   +P  ++   K G  + ++TNG+   P  ID +
Sbjct: 85  VVTGGEPAMHESLPESLRTFRKLGLLVKLDTNGSY--PDMIDLL 126


>gi|298736472|ref|YP_003728998.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori B8]
 gi|298355662|emb|CBI66534.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori B8]
          Length = 321

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 65/182 (35%), Gaps = 37/182 (20%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLLQV-DV 101
           +C++C      +  T    ++ ++L    +++E   I  ++  +   +TGGEPLL+    
Sbjct: 24  RCQYC------MPATPLDFFDDEELLPLDNVLEFLKIAIDEGVKKIRITGGEPLLRKGLD 77

Query: 102 PLIQALNKRGFEIA--VETNGTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQEL 149
             I  L+    E+A  + TNG +      D        + V   S K+   LKI     L
Sbjct: 78  EFIAKLHAYNKEVALVLSTNGFLLKKMAKDLKDAGLSRVNVSLDSLKSDRVLKISQKDAL 137

Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
           K     +  S +  +           M     +E   L + Y              K I 
Sbjct: 138 KNALEGIEESLKVGLKLKLNTVV---MKSVNDDEILEL-LEYAKN-----------KHIQ 182

Query: 210 IR 211
           IR
Sbjct: 183 IR 184


>gi|294673943|ref|YP_003574559.1| pyruvate formate-lyase activating enzyme [Prevotella ruminicola 23]
 gi|294473065|gb|ADE82454.1| pyruvate formate-lyase activating enzyme [Prevotella ruminicola 23]
          Length = 245

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 31/121 (25%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +CR+C   DT  +G   
Sbjct: 10  TESFGSVDGPG---------IRFLIFMQGC-----------RMRCRYCHNPDTWKLGSDA 49

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117
             G    VD+L +  E        +G    ++GGE LLQ+D  + L +  ++RG    ++
Sbjct: 50  C-GTTATVDELLNKAERYRSYWGPDGG-ITVSGGEALLQIDFLIELFEEAHRRGINTCLD 107

Query: 118 T 118
           T
Sbjct: 108 T 108


>gi|221211776|ref|ZP_03584754.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           multivorans CGD1]
 gi|221167861|gb|EEE00330.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           multivorans CGD1]
          Length = 367

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 53/145 (36%), Gaps = 24/145 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN   G    R         +D+  +      R +  QL  +       G ++ R   +T
Sbjct: 45  CNFRCGYCMPREIFG-----SDYAFM--PPADRLSFAQLGRIARAFVSLGVEKIR---IT 94

Query: 92  GGEPLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKA 137
           GGEPLL+  +  LI+ L        R  E+A+ TNG +           G+  + VS  A
Sbjct: 95  GGEPLLRRHLETLIERLAALTTVDGRPVELALTTNGALLAAKARTLRDAGLTRVTVSLDA 154

Query: 138 GCDLKIKGGQELKLVFPQVNVSPEN 162
             D   +   +  +   +V    E 
Sbjct: 155 LDDAVFRRMSDADVPVSRVLAGIEA 179


>gi|187929569|ref|YP_001900056.1| pyrroloquinoline quinone biosynthesis protein PqqE [Ralstonia
           pickettii 12J]
 gi|309781652|ref|ZP_07676386.1| coenzyme PQQ biosynthesis protein E [Ralstonia sp. 5_7_47FAA]
 gi|187726459|gb|ACD27624.1| coenzyme PQQ biosynthesis protein E [Ralstonia pickettii 12J]
 gi|308919627|gb|EFP65290.1| coenzyme PQQ biosynthesis protein E [Ralstonia sp. 5_7_47FAA]
          Length = 400

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R    C FC    D+           + +Q  D+  +    G  +     
Sbjct: 26  PLWLLAELTYRCPLHCAFCSNPVDYTRHD----QELSTEQWCDVFTQARALGAVQLG--- 78

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           L+GGEPLL+ D+  L+   +  GF + + T+G
Sbjct: 79  LSGGEPLLRKDLETLVAHAHGLGFYVNLVTSG 110


>gi|83592252|ref|YP_426004.1| pyruvate-formate lyase-activating enzyme [Rhodospirillum rubrum
           ATCC 11170]
 gi|83575166|gb|ABC21717.1| pyruvate-formate lyase-activating enzyme [Rhodospirillum rubrum
           ATCC 11170]
          Length = 306

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 18/105 (17%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118
           KG    V Q+   +++  I   + G    L+GGEPL+Q    + L++A   +G+  A+ET
Sbjct: 107 KGKGMTVWQVMQELQKDAINYRRSGGGITLSGGEPLVQSAFALELLKACKDKGWSTAMET 166

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQ----ELKLVFPQVNVS 159
            G              PK   +  +        +LK + P+V+ S
Sbjct: 167 TGHA------------PKEVVEQVMPFVDHALVDLKSIDPRVHES 199


>gi|330830319|ref|YP_004393271.1| pyruvate formate-lyase 2-activating enzyme [Aeromonas veronii B565]
 gi|328805455|gb|AEB50654.1| Pyruvate formate-lyase 2-activating enzyme [Aeromonas veronii B565]
          Length = 298

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           G    +D L D I       E+ G    L+GGEP +Q D    L+      G   AVE+
Sbjct: 100 GRDETLDTLMDTILRDRPFFERSGGGVTLSGGEPFMQPDFAAALLARCKAEGLHTAVES 158


>gi|307824811|ref|ZP_07655034.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
 gi|307734169|gb|EFO05023.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
          Length = 463

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 54/143 (37%), Gaps = 46/143 (32%)

Query: 28  RFSG--------CNLWSGREQDRLSAQCRFCDTDFVGIQGT--KGGRYNVDQLADLIEEQ 77
           R +G        CNL            C +C   +    G   KG     ++ AD   ++
Sbjct: 83  RLTGFYLFVSQECNL-----------ACSYC---YGDGGGEYRKGKMIMDERTADNFIDK 128

Query: 78  WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR--------GFEI--AVETNGTIE---- 123
           +IT +  G      GGEPLL  ++PLIQ +  R        G      + TNGT+     
Sbjct: 129 FITDQNPGYLINFFGGEPLL--NLPLIQKIIDRVRAKTEPLGIRTVFNMTTNGTVWSSKI 186

Query: 124 ---PPQGIDWICVS---PKAGCD 140
                + ID + VS   PK   D
Sbjct: 187 ADFVSKNIDTLTVSLDGPKDIND 209


>gi|315231123|ref|YP_004071559.1| radical SAM domain heme biosynthesis protein [Thermococcus
           barophilus MP]
 gi|315184151|gb|ADT84336.1| radical SAM domain heme biosynthesis protein [Thermococcus
           barophilus MP]
          Length = 535

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 29/105 (27%)

Query: 28  RFSG-----------CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           R +G           CNL           +C+ C   +           ++ +  +L+E+
Sbjct: 123 RLAGPFLIVWNFTNMCNL-----------RCQHC---YQRADKPLSSELSLKEKLNLVEQ 168

Query: 77  QWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
               G        L+GGEP +    + +++ L+ RG   +V TNG
Sbjct: 169 LDKAGVAA---VALSGGEPTIHPHFLRIVRELSNRGIHTSVATNG 210


>gi|162448131|ref|YP_001621263.1| ribonucleoside-triphosphate reductase activating, anaerobic
           [Acholeplasma laidlawii PG-8A]
 gi|161986238|gb|ABX81887.1| ribonucleoside-triphosphate reductase activating, anaerobic
           [Acholeplasma laidlawii PG-8A]
          Length = 172

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 27/97 (27%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ--LADLIEEQWITGE 82
           VF    GCNL           +C  C              + +D+  L +L E +     
Sbjct: 29  VF--TQGCNL-----------RCPGC---------HNPSTHALDEGKLIELTEIRKKWKR 66

Query: 83  KEGRY-CVLTGGEPLLQVD--VPLIQALNKRGFEIAV 116
               +   ++GGEP LQ +  + LI+  ++ G ++ +
Sbjct: 67  NPLLHGITISGGEPFLQPEPVLELIKMAHEDGLDVNI 103


>gi|158337693|ref|YP_001518869.1| hypothetical protein AM1_4577 [Acaryochloris marina MBIC11017]
 gi|158307934|gb|ABW29551.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 324

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 14/100 (14%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R +A+C FCD          G   + D +   +E+    G    +Y   TGGEPLL+ DV
Sbjct: 13  RCNARCHFCD----IWALDPGKEADFDTIEHNLEDLKRLG---VKYVDFTGGEPLLRTDV 65

Query: 102 -PLIQALNKRGFEIAVETNG------TIEPPQGIDWICVS 134
             + Q   + GF  ++ TN         E    +D++  S
Sbjct: 66  GRIYQTAKQLGFYTSMTTNTILYLKKAHEVRGLVDFLNFS 105


>gi|304437610|ref|ZP_07397565.1| molybdenum cofactor biosynthesis protein A [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304369423|gb|EFM23093.1| molybdenum cofactor biosynthesis protein A [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 331

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 26/114 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +CR+C    +   G K  R+ +V    +++ +  +      R   L
Sbjct: 20  CNL-----------RCRYC----MPAHGVKKLRHADVLTYEEILRDVRVLAALGVRKVRL 64

Query: 91  TGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134
           TGGEPL++ D+  L++ L +  G E +A+ TNG +           G+D + +S
Sbjct: 65  TGGEPLVRRDITRLVRGLKEIPGIETVALTTNGVLLGTMMDELLDAGLDAVNLS 118


>gi|297624979|ref|YP_003706413.1| molybdenum cofactor biosynthesis protein A [Truepera radiovictrix
           DSM 17093]
 gi|297166159|gb|ADI15870.1| molybdenum cofactor biosynthesis protein A [Truepera radiovictrix
           DSM 17093]
          Length = 336

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 13/102 (12%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R + +C +CD           G  +V  +A ++E     G +  R+   TGGEPLL+ ++
Sbjct: 33  RCNFRCTYCD-PLGLGHADPVGTLSVQDVAHVLEAAVGLGMRSVRF---TGGEPLLRREL 88

Query: 102 PLIQALNKR-GFE-IAVETNGTI-------EPPQGIDWICVS 134
           P + A  KR G E +A+ TN T+           G+D + +S
Sbjct: 89  PEMIACAKRLGVEDVAITTNATLLERRLDALLAAGLDRVNIS 130


>gi|269137809|ref|YP_003294509.1| putative pyruvate-formate lyase-activating enzyme [Edwardsiella
           tarda EIB202]
 gi|267983469|gb|ACY83298.1| putative pyruvate-formate lyase-activating enzyme [Edwardsiella
           tarda EIB202]
 gi|304557864|gb|ADM40528.1| Pyruvate formate-lyase activating enzyme [Edwardsiella tarda
           FL6-60]
          Length = 299

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118
           G    V+++    E      ++ G    L+GGEP +Q  +   L++  ++ G   AVET
Sbjct: 101 GEALAVEEILRQAERDRPFYQRSGGGITLSGGEPFMQPTLAETLLRRCHQSGIHTAVET 159


>gi|239927460|ref|ZP_04684413.1| hypothetical protein SghaA1_04494 [Streptomyces ghanaensis ATCC
           14672]
 gi|291435802|ref|ZP_06575192.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291338697|gb|EFE65653.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 340

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 38  CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  + + L  R   + + TN  +   + +D    SP     + I G Q+
Sbjct: 80  GGEPLMHPQIDEITRQLVARRKYVFLCTN-ALLLRKKMDLFTPSPYFAFAVHIDGLQK 136


>gi|188992759|ref|YP_001904769.1| molybdenum cofactor biosynthesis protein A [Xanthomonas campestris
           pv. campestris str. B100]
 gi|226707392|sp|B0RTE0|MOAA_XANCB RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|167734519|emb|CAP52729.1| Molybdenum cofactor biosynthesis protein A,probable [Xanthomonas
           campestris pv. campestris]
          Length = 339

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 57/143 (39%), Gaps = 22/143 (15%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
           +C +C   D            R + DQL  L+      G  + R   LTGGEPLL+ ++P
Sbjct: 32  RCGYCMPADRVPDDYGLDADQRLSFDQLETLVRAFVAVGVTKLR---LTGGEPLLRKNLP 88

Query: 103 -LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVSPKAGCDLKIK----GGQE 148
            LIQ L    G E +A+ TNG +   Q +         I VS  A      +    G  E
Sbjct: 89  VLIQRLAAIEGIEDLALTTNGALLARQAVALRQAGLRRITVSMDALEPALFRQMSGGRGE 148

Query: 149 LKLVFPQVNVSPENYIGFDFERF 171
           +  V     ++     GFD  + 
Sbjct: 149 IDQVL--AGIAAAEQAGFDRLKI 169


>gi|307243155|ref|ZP_07525328.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678]
 gi|306493416|gb|EFM65396.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678]
          Length = 473

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 15/101 (14%)

Query: 28  RF-SGCNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           R   GCN+      D  SA   +C+ C   +    G      + ++L D+IE+    G  
Sbjct: 108 RLEHGCNVPWLILMDPTSACNLKCKGC---WAAEYG-HNQSLSFEELDDIIEQGKKLGIY 163

Query: 84  EGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122
              Y   TGGEPL+  +  + L    ++  + +A  TNGT+
Sbjct: 164 FYMY---TGGEPLMRKKDLIRLCDK-HRDCYFLAF-TNGTL 199


>gi|269122292|ref|YP_003310469.1| glycyl-radical enzyme activating protein family [Sebaldella
           termitidis ATCC 33386]
 gi|268616170|gb|ACZ10538.1| glycyl-radical enzyme activating protein family [Sebaldella
           termitidis ATCC 33386]
          Length = 304

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 64/195 (32%), Gaps = 27/195 (13%)

Query: 30  SGC--NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
           SGC  N  +      +   C +          TKG     ++L+  +       +  G  
Sbjct: 77  SGCIINREACTNLAEMPDICPY------DAYETKGTEMTAEELSSKLIRDMDFYKTSGGG 130

Query: 88  CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI------EPPQGIDWICVSPKAGC 139
              +GGEP LQ +      + L       A++T   I      +  + ID + +  KA  
Sbjct: 131 VTFSGGEPCLQDEFVYETAKLLKNHNIHTALDTAAHIKKEKLAKILEVIDLVLLDIKAFD 190

Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFE-RFSLQPMDGPFLEENTNLAISYCFQNPKW 198
            L  + G  +K      N      I  D   R  + P     L++     + +       
Sbjct: 191 PLIHEKGTLVKNDLILKNAKMIADIKKDMLVRIVIIPGMNDDLDDIRKR-LEFVKSLGN- 248

Query: 199 RLSV-QT-----HKF 207
             SV QT     HKF
Sbjct: 249 --SVKQTDILKYHKF 261


>gi|217969195|ref|YP_002354429.1| radical SAM protein [Thauera sp. MZ1T]
 gi|217506522|gb|ACK53533.1| Radical SAM domain protein [Thauera sp. MZ1T]
          Length = 476

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 51/142 (35%), Gaps = 48/142 (33%)

Query: 21  GRVA-------VFCRF----------SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           GR A        F RF          +GCNL            C +C   D D    + +
Sbjct: 84  GRPAGAGTLAHTFERFPLTTVVLNVNTGCNL-----------SCTYCYKEDLD----KPS 128

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQ--------ALNKRG 111
            G +       D IE        E RY  V  GGEPL   ++PLI+           + G
Sbjct: 129 AGRKMAFGTARDAIEMMLRESPDEPRYNVVFFGGEPL--SNLPLIKDVVAYCEARFAELG 186

Query: 112 FEI--AVETNGTIEPPQGIDWI 131
            ++   + TN T+     IDW+
Sbjct: 187 KQVDFVMTTNATLLADDTIDWL 208


>gi|15645387|ref|NP_207561.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           26695]
 gi|3024137|sp|P56414|MOAA_HELPY RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|2313896|gb|AAD07817.1| molybdenum cofactor biosynthesis protein A (moaA) [Helicobacter
           pylori 26695]
          Length = 321

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 56/165 (33%), Gaps = 24/165 (14%)

Query: 46  QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102
           +C++C   T              +D + + ++     G K+ R   +TGGEPLL+     
Sbjct: 24  RCQYCMPATPLNFFDNE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDE 78

Query: 103 LIQALNKRGFEIA--VETNGTIEPPQGID-------WICV---SPKAGCDLKIKGGQELK 150
            I  L+    E+   + TNG +      D        + V   S K+   LKI     LK
Sbjct: 79  FIAKLHAYNKEVELVLSTNGFLLKKMAKDLKNAGLAQVNVSLDSLKSDRVLKISQKDALK 138

Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
                +  S +  +           +     +E   L + Y    
Sbjct: 139 NTLEGIEESLKVGLKLKLNTVV---IKSVNDDEILEL-LEYAKNR 179


>gi|117928855|ref|YP_873406.1| GTP cyclohydrolase subunit MoaA [Acidothermus cellulolyticus 11B]
 gi|166217236|sp|A0LVG0|MOAA_ACIC1 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|117649318|gb|ABK53420.1| GTP cyclohydrolase subunit MoaA [Acidothermus cellulolyticus 11B]
          Length = 362

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 19/109 (17%)

Query: 41  DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
           DR + +CR+C               +      +++  +       G ++ R   LTGGEP
Sbjct: 22  DRCNMRCRYC-MPREIFGPNFTFLPRSELLTFEEITRIAAAFIRAGVRKIR---LTGGEP 77

Query: 96  LLQVDVP-LIQALNKRG--FEIAVETNGTIEP-------PQGIDWICVS 134
           LL+ D+P L+  L       ++A+ TNG++           G+  + VS
Sbjct: 78  LLRADLPRLVAMLADLPDVHDLALTTNGSLLARYARPLRDAGLRRVTVS 126


>gi|305665849|ref|YP_003862136.1| Radical SAM [Maribacter sp. HTCC2170]
 gi|88710620|gb|EAR02852.1| Radical SAM [Maribacter sp. HTCC2170]
          Length = 441

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 12/82 (14%)

Query: 31  GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G   D     C             C T +     T G   ++D++  +++   +
Sbjct: 58  GCPYDCGLCPDHEQHSCLTVVEVTDRCNLTCPTCYASSSPTYGRHRSLDEIKKMLD-TIV 116

Query: 80  TGEKEGRYCVLTGGEPLLQVDV 101
             E E     ++GGEP +  + 
Sbjct: 117 KNEGEPDVVQISGGEPTIHPNF 138


>gi|258653371|ref|YP_003202527.1| pyruvate formate-lyase activating enzyme [Nakamurella multipartita
           DSM 44233]
 gi|258556596|gb|ACV79538.1| pyruvate formate-lyase activating enzyme [Nakamurella multipartita
           DSM 44233]
          Length = 267

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 24/105 (22%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+  F   SGC           + +C +C   DT  +      G    +D++   I    
Sbjct: 39  RLTYF--LSGC-----------ALRCLYCQNPDTWRLPDGMPTG----IDEVKARIFRYA 81

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETNG 120
                 G    ++GGEPLLQ    L + L    + G   A++T+G
Sbjct: 82  PVLRATGGGLTVSGGEPLLQTAF-LGRMLRYAKELGLHTAIDTSG 125


>gi|15679546|ref|NP_276663.1| molybdenum cofactor biosynthesis protein A [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622671|gb|AAB86024.1| molybdenum cofactor biosynthesis MoaA [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 316

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 29/126 (23%)

Query: 21  GRVAVFCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           GR  +  R S    CN+            C +C         +  G  +   +  L    
Sbjct: 19  GRPVMSLRLSITGRCNV-----------NCIYC---HRDGMTSSRGELSAADIEKLCRVA 64

Query: 78  WITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFE-IAVETNGTI-------EPPQGI 128
              G  + R   L+GGEPL++ D+  +++ +N  GF  I++ TNGT+           G+
Sbjct: 65  SDLGVGKIR---LSGGEPLIRDDIVEIVERINNIGFRDISITTNGTLLEGYSAALSEAGL 121

Query: 129 DWICVS 134
           D + VS
Sbjct: 122 DRVNVS 127


>gi|89072729|ref|ZP_01159294.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium
           sp. SKA34]
 gi|89051549|gb|EAR57003.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium
           sp. SKA34]
          Length = 246

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C +C   DT         G    V++L    +      
Sbjct: 25  VF--LQGC-----------LMRCLYCHNRDT----WDTHGGREATVEELMHEAKSYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
              G     +GGE +LQ +      +A    G    ++TNG
Sbjct: 68  NSSGGGVTASGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNG 108


>gi|296158258|ref|ZP_06841090.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. Ch1-1]
 gi|295891594|gb|EFG71380.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. Ch1-1]
          Length = 369

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 59/150 (39%), Gaps = 29/150 (19%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C      D D+  +  +    +  +++LA +     +   +      LTGG
Sbjct: 45  DRCNFRCVYCMPRSVFDKDYTFLPHSALLSFEEIERLARIFVAHGVEKIR------LTGG 98

Query: 94  EPLLQVDVP-LIQAL------NKRGFEIAVETNGTI-------EPPQGIDWICVSPKAGC 139
           EPLL+ ++  LI  L        R  ++ + TNG++           G+  + VS  A  
Sbjct: 99  EPLLRKNLEFLIDRLAHLTTPAGRPLDLTLTTNGSLLERKARSLKDAGLTRVTVSLDALD 158

Query: 140 DLKIKGGQELKLVFPQV--NVSPENYIGFD 167
           D   +   +       V   ++  + +G  
Sbjct: 159 DTLFRRMNDADFAVADVLDGIAAAHAVGLA 188


>gi|288574545|ref|ZP_06392902.1| molybdenum cofactor biosynthesis protein A [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570286|gb|EFC91843.1| molybdenum cofactor biosynthesis protein A [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 325

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 13/112 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +CR+C         +     + + +  L +     G K  R+   TG
Sbjct: 14  NYVRISVTDRCNFRCRYCMPSRGVPTLSHEEIMSYEDILFLAKTLSSMGVKRLRF---TG 70

Query: 93  GEPLLQVD-VPLIQALNKR--GFEIAVETNGTIEPP-------QGIDWICVS 134
           GEP ++ D VP ++ L        +AV TNG++  P        G+D I VS
Sbjct: 71  GEPFVRKDFVPFLERLKSELPDLAVAVTTNGSLVKPWANRLGNLGLDGISVS 122


>gi|221636246|ref|YP_002524122.1| radical SAM domain protein [Thermomicrobium roseum DSM 5159]
 gi|221157912|gb|ACM07030.1| radical SAM domain protein [Thermomicrobium roseum DSM 5159]
          Length = 365

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104
            C  C                 ++   LI+E          Y  + GGEPLL+ D V L+
Sbjct: 27  NCVHC---LSSSGKRASDELTTEEAKRLIDEW---AALRVFYINVGGGEPLLRPDFVELM 80

Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
           +    RG  +   TNG++      DWI  +P     + + G
Sbjct: 81  EYAIARGIGVKFSTNGSLIDEAVADWIARTPYLDVQISLDG 121


>gi|169350284|ref|ZP_02867222.1| hypothetical protein CLOSPI_01028 [Clostridium spiroforme DSM 1552]
 gi|169293067|gb|EDS75200.1| hypothetical protein CLOSPI_01028 [Clostridium spiroforme DSM 1552]
          Length = 298

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 3/78 (3%)

Query: 46  QCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVP 102
            C  C  + F      +G    +D++ D+  +     E+ G    ++GGE + Q      
Sbjct: 86  GCLQCVSSCFNNALSHEGKYQEIDEIVDICLQDQDFYEESGGGVTISGGEGMAQPKFLKE 145

Query: 103 LIQALNKRGFEIAVETNG 120
           L+  L K    +A+ET G
Sbjct: 146 LVTKLKKHNLHVAIETTG 163


>gi|153811590|ref|ZP_01964258.1| hypothetical protein RUMOBE_01982 [Ruminococcus obeum ATCC 29174]
 gi|149832331|gb|EDM87416.1| hypothetical protein RUMOBE_01982 [Ruminococcus obeum ATCC 29174]
          Length = 298

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           G  Y+V++L++L+       E        +GGEP++Q ++   L   L +    +A ET 
Sbjct: 104 GSYYSVEELSELLLRDRRLYEISEGGVTFSGGEPMMQAEILYDLCSRLQEEHISVAFETA 163

Query: 120 GTIEP------PQGIDWICVSPKAGCDLKIK 144
                       + +D   V  K   + K K
Sbjct: 164 LAFPWKVIHRMTECVDLFLVDFKIFDNEKHK 194


>gi|187924899|ref|YP_001896541.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           phytofirmans PsJN]
 gi|187716093|gb|ACD17317.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           phytofirmans PsJN]
          Length = 369

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 27/170 (15%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +  +     + +++  L       G ++ R   LTGGE
Sbjct: 45  DRCNFRCVYCMPRAVFDKDYTFLPHS--ALLSFEEIERLARLFVAHGVEKIR---LTGGE 99

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTI-------EPPQGIDWICVSPKAGCD 140
           PLL+ ++  LI+ L +      R  ++ + TNG++           G+  + VS  A  D
Sbjct: 100 PLLRKNLEFLIERLAQLTTPAGRPLDLTLTTNGSLLERKARSLKDAGLTRVTVSLDALDD 159

Query: 141 LKIKGGQELKLVFPQV--NVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
              +   +       V   ++  + +G    + ++    G    E   +A
Sbjct: 160 TLFRRMNDADFAVGDVLDGIAAAHAVGLAPVKVNMVVKRGTNDSEIVPMA 209


>gi|302557111|ref|ZP_07309453.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Streptomyces griseoflavus Tu4000]
 gi|302474729|gb|EFL37822.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Streptomyces griseoflavus Tu4000]
          Length = 340

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 38  CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  +++ L  R   + + TN  +   + +D    SP     + I G +E
Sbjct: 80  GGEPLMHPQIDEIVRQLVARRKYVFLCTN-ALLMRKKMDRFTPSPYFAFAVHIDGLRE 136


>gi|269120548|ref|YP_003308725.1| glycyl-radical enzyme activating protein family [Sebaldella
           termitidis ATCC 33386]
 gi|268614426|gb|ACZ08794.1| glycyl-radical enzyme activating protein family [Sebaldella
           termitidis ATCC 33386]
          Length = 273

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 47/148 (31%), Gaps = 52/148 (35%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC------------- 50
           IF     +L  G G       VF  F GC L           +C +C             
Sbjct: 6   IFNIQRYSLNDGSGIRT---MVF--FKGCRL-----------RCPWCSNPESQSSKIEIM 49

Query: 51  ----------------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
                           D D  G     G  Y +D+L   + +  +          L+GGE
Sbjct: 50  INKEKKKKYEQYVGSVDEDPTGTYEKSGKWYKLDELMKEVLKDEVFFNASKGGVTLSGGE 109

Query: 95  PLLQVD--VPLIQALNKRGFEIAVETNG 120
            L Q +  +  ++ L + G   AVET G
Sbjct: 110 ILEQGEFVLEFLKELKEHGINTAVETCG 137


>gi|114326910|ref|YP_744067.1| radical SAM superfamily protein [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315084|gb|ABI61144.1| radical SAM superfamily protein [Granulibacter bethesdensis
           CGDNIH1]
          Length = 331

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 30/97 (30%), Gaps = 9/97 (9%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L       R +  C +C                   L +L+       +        TGG
Sbjct: 32  LAQVVVTRRCNLACGYC--------NEYDTFSPPVPLPELLARIDHLAKLRTASITFTGG 83

Query: 94  EPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGID 129
           EPLL       I+A  + G  + + TNG       ID
Sbjct: 84  EPLLHPQLDEAIRAARRHGMIVTMITNGFRLTKAWID 120


>gi|210623576|ref|ZP_03293902.1| hypothetical protein CLOHIR_01852 [Clostridium hiranonis DSM 13275]
 gi|210153446|gb|EEA84452.1| hypothetical protein CLOHIR_01852 [Clostridium hiranonis DSM 13275]
          Length = 246

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 27/169 (15%)

Query: 8   EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F T+ G G  +     VF    GC L           +C++C   DT         G 
Sbjct: 10  ETFGTVDGPGIRYI----VF--LQGCPL-----------RCKYCHNRDT----WNKNGGT 48

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
               +++     +     E  G     +GGE   Q      L +   K G    ++T+G 
Sbjct: 49  EKTAEEVVQDALKYKTYMEFSGGGLTASGGEATAQPEFLYELFKEAKKNGLNTCLDTSGC 108

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
            +       + ++     DLK    ++ K +      S   +  +  E+
Sbjct: 109 TKATDIAHILELTDTVLLDLKHLIPEDAKSLAGIDINSAIEFAKYLDEK 157


>gi|241889395|ref|ZP_04776696.1| pyruvate formate-lyase 1-activating enzyme [Gemella haemolysans
           ATCC 10379]
 gi|241863938|gb|EER68319.1| pyruvate formate-lyase 1-activating enzyme [Gemella haemolysans
           ATCC 10379]
          Length = 265

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 21/102 (20%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL-ADLIEEQWIT 80
           VF  F GC             +C++C   DT    +Q        VDQL  ++++ +   
Sbjct: 39  VF--FQGC-----------MLRCKYCHNPDT--WKMQNPDAKVMTVDQLTKEIVKYRDFF 83

Query: 81  GEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
              +G    ++GGE LLQ+D  + L + L +      V+T G
Sbjct: 84  EASDGGGVTVSGGESLLQIDFILALFRKLKELDINTCVDTCG 125


>gi|320530476|ref|ZP_08031534.1| pyruvate formate-lyase 1-activating enzyme [Selenomonas artemidis
           F0399]
 gi|320137309|gb|EFW29233.1| pyruvate formate-lyase 1-activating enzyme [Selenomonas artemidis
           F0399]
          Length = 252

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 43/125 (34%), Gaps = 25/125 (20%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
            E F ++ G G        VF    GC             +C++C       +   G   
Sbjct: 11  TESFGSVDGPGIRFI----VFV--QGC-----------RYRCQYCHNPETW-ETEGGYEA 52

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG--- 120
             +++            K      ++GGEPLLQ+D    L +    +G   AV+T G   
Sbjct: 53  TPEEIFRQALRYRPY-WKNTGGITVSGGEPLLQLDFVTELFRLAKVKGVNTAVDTAGEPF 111

Query: 121 TIEPP 125
           T   P
Sbjct: 112 THAQP 116


>gi|307130799|ref|YP_003882815.1| pyruvate formate lyase activating enzyme 1 [Dickeya dadantii 3937]
 gi|306528328|gb|ADM98258.1| pyruvate formate lyase activating enzyme 1 [Dickeya dadantii 3937]
          Length = 246

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 58/179 (32%), Gaps = 40/179 (22%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V++L   +          G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKEVVTYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI----EPPQGIDWICVSPKAGC 139
                +GGE +LQ +      +A +++G    ++TNG +         +  +        
Sbjct: 72  GGVTASGGEAILQAEFVRDWFRACHEQGINTCLDTNGFVRRYDPVIDELLDVT------- 124

Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
           DL +   ++L     Q  V   N+   DF R+          + N    I Y    P W
Sbjct: 125 DLVMLDLKQLNDEVHQNLVGVSNHRTLDFARY--------LAKRNQRTWIRYVVV-PGW 174


>gi|289667851|ref|ZP_06488926.1| molybdenum cofactor biosynthesis protein A [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 343

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 16/102 (15%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
           +C +C   D            R + DQL  L+      G  + R   LTGGEPLL+ D+P
Sbjct: 36  RCGYCMPADRVPDDYGFDSQQRLSFDQLETLVRAFVSVGVTKVR---LTGGEPLLRRDLP 92

Query: 103 -LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVS 134
            LI  L    G E +A+ TNGT+   Q +         I VS
Sbjct: 93  SLIARLGAIEGIEDLALTTNGTLLARQAVALRQAGLRRITVS 134


>gi|210620573|ref|ZP_03292121.1| hypothetical protein CLOHIR_00064 [Clostridium hiranonis DSM 13275]
 gi|210155287|gb|EEA86293.1| hypothetical protein CLOHIR_00064 [Clostridium hiranonis DSM 13275]
          Length = 298

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 46/143 (32%), Gaps = 48/143 (33%)

Query: 24  AVFCRFSGCNLWSGREQDRLS-----------AQCRFC---------------DTDFVGI 57
            VF  F GC L      +  S           ++C +C               D   +  
Sbjct: 23  TVF--FKGCPLRCEWCSNPESQIKNVQILHDQSKCSYCLSCVVTCPNGAITHEDNKIIIN 80

Query: 58  Q------------------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           +                    +G    ++++ D+  +     E+ G    ++GGE + Q 
Sbjct: 81  EDKCVGCLTCVNSCPNRALSYEGDYQTIEEIVDICMQDIDFYEESGGGVTISGGEGMSQP 140

Query: 100 DV--PLIQALNKRGFEIAVETNG 120
           D    LI  L K    +A+ET G
Sbjct: 141 DFLKKLIAELKKNSVHVAIETTG 163


>gi|172060044|ref|YP_001807696.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
           MC40-6]
 gi|171992561|gb|ACB63480.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
           MC40-6]
          Length = 370

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 36/161 (22%)

Query: 28  RFSGCNLWSGREQ--DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           RF+   L   R    DR + +C +C      D D+  +  +       +++ + +   ++
Sbjct: 31  RFAR-PLRDLRISVTDRCNFRCVYCMPRDVFDKDYPFLPHS--ALLTHEEI-ERVARLFV 86

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------P 125
               E     +TGGEPLL+ ++  LI+ L +      R  ++ + TNG++          
Sbjct: 87  AHGVEK--IRITGGEPLLRKNLEFLIERLARLTTHDGRPLDLTLTTNGSLLARKARALKD 144

Query: 126 QGIDWICVS--------PKAGCDLKIKGGQELKLVFPQVNV 158
            G+  + VS         K   D        L  +F    V
Sbjct: 145 AGLTRVTVSLDALDDTLFKRMNDADFASADVLDGIFAAQAV 185


>gi|21673256|ref|NP_661321.1| AslB/AtsB family protein [Chlorobium tepidum TLS]
 gi|21646343|gb|AAM71663.1| AslB/AtsB family protein [Chlorobium tepidum TLS]
          Length = 336

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 20/95 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C   + G    +G   ++D     ++   +    +  +  LT
Sbjct: 8   CNL-----------DCAYC---YEGGGNGQGEMMDLDTALRALD--LVAASNQPFHVQLT 51

Query: 92  GGEPLLQVDVPL--IQALNKRGFE--IAVETNGTI 122
           GGEPLL  ++    ++ +         A++TNG +
Sbjct: 52  GGEPLLAGELVFRILEYIRNNNLPATTAIQTNGVL 86


>gi|115351039|ref|YP_772878.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
           AMMD]
 gi|115281027|gb|ABI86544.1| GTP cyclohydrolase subunit MoaA [Burkholderia ambifaria AMMD]
          Length = 370

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 36/161 (22%)

Query: 28  RFSGCNLWSGREQ--DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           RF+   L   R    DR + +C +C      D D+  +  +       +++ + +   ++
Sbjct: 31  RFAR-PLRDLRISVTDRCNFRCVYCMPRDVFDKDYPFLPHS--ALLTHEEI-ERVARLFV 86

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------P 125
               E     +TGGEPLL+ ++  LI+ L +      R  ++ + TNG++          
Sbjct: 87  AHGVEK--IRITGGEPLLRKNLEFLIERLARLTTHDGRPLDLTLTTNGSLLARKARALKD 144

Query: 126 QGIDWICVS--------PKAGCDLKIKGGQELKLVFPQVNV 158
            G+  + VS         K   D        L  +F    V
Sbjct: 145 AGLTRVTVSLDALDDTLFKRMNDADFASADVLDGIFAAQAV 185


>gi|283853875|ref|ZP_06371090.1| Methyltransferase type 11 [Desulfovibrio sp. FW1012B]
 gi|283570733|gb|EFC18778.1| Methyltransferase type 11 [Desulfovibrio sp. FW1012B]
          Length = 795

 Score = 44.6 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 27/92 (29%), Gaps = 19/92 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC                 +     I E    G    R   LT
Sbjct: 89  CNLAC--------RHCLFC------SGPAAARELATETGLARIAEARNLG---CRVFALT 131

Query: 92  GGEPLLQVDVP--LIQALNKRGFEIAVETNGT 121
           GGEP L       L  AL      + V TNGT
Sbjct: 132 GGEPFLHPGFEALLDAALEDPAAHVVVLTNGT 163


>gi|226947765|ref|YP_002802856.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|226844545|gb|ACO87211.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 413

 Score = 44.6 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 23/121 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL               CD             +   ++ + +++     E +     +T
Sbjct: 102 CNLHCKHCMVNADK----CDIK---------ENFTTKEIINALDKII---EAKPEAITIT 145

Query: 92  GGEPLLQVD-VPLIQALNKR-GFEIAVETNGTIEPPQGIDWI--CVSPKAGCDLKIKGGQ 147
           GGEPL++ D + +I+ L      +I + TN T+     I+ I  CVS     D+ I G  
Sbjct: 146 GGEPLVRPDFIKIIKYLKNNYNGKIGLMTNATLITENNINDIISCVS---SIDISIDGVD 202

Query: 148 E 148
           E
Sbjct: 203 E 203


>gi|237807654|ref|YP_002892094.1| pyruvate formate-lyase activating enzyme [Tolumonas auensis DSM
           9187]
 gi|237499915|gb|ACQ92508.1| pyruvate formate-lyase activating enzyme [Tolumonas auensis DSM
           9187]
          Length = 248

 Score = 44.6 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C++C   DT         G    VD L   +       +  G
Sbjct: 27  FQGC-----------LMRCKYCHNRDT----WDTEGGKEVTVDDLMKDLLAYRHFIKASG 71

Query: 86  RYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
                +GGE  LQ +      +A    G    ++TNG
Sbjct: 72  GGVTASGGEATLQKEFVTEWFKACKAEGIHTCLDTNG 108


>gi|169350526|ref|ZP_02867464.1| hypothetical protein CLOSPI_01294 [Clostridium spiroforme DSM 1552]
 gi|169292846|gb|EDS74979.1| hypothetical protein CLOSPI_01294 [Clostridium spiroforme DSM 1552]
          Length = 353

 Score = 44.6 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 9/87 (10%)

Query: 44  SAQCRF-CDTDFVGIQGTK----GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           + +C F C   +V +        G   +  +  D+ ++    G     +  +TGGEPLL 
Sbjct: 40  TPRCNFNCKMCYVHLSEKDIPKYGKELSAKKWIDIAKQAKEAGTT---WLCITGGEPLLH 96

Query: 99  VDV-PLIQALNKRGFEIAVETNGTIEP 124
            +   +   L+K GF I ++TN ++ P
Sbjct: 97  PEFGKIYTQLSKMGFFITLQTNASLIP 123


>gi|146297184|ref|YP_001180955.1| radical SAM domain-containing protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410760|gb|ABP67764.1| Radical SAM domain protein [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 246

 Score = 44.6 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 50/144 (34%), Gaps = 22/144 (15%)

Query: 50  CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQAL 107
           CD         K  + + + +  +I+E             ++GGEP L +D  L  I   
Sbjct: 20  CDICCFFCSLHKNEKMSKELIVKIIDEAKSVNSISTFG--ISGGEPFLYLDELLFAISLA 77

Query: 108 NKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD 167
            K GF+    TNG         +  VSPKA  ++ +    ELK    +  +S    +  D
Sbjct: 78  TKSGFKTTCTTNG---------FWAVSPKATVEIMM----ELK----KAGLS-HLSVSID 119

Query: 168 FERFSLQPMDGPFLEENTNLAISY 191
                  P+D           I  
Sbjct: 120 EFHLKFVPVDNIKRILKVARQIDL 143


>gi|125972753|ref|YP_001036663.1| radical SAM family protein [Clostridium thermocellum ATCC 27405]
 gi|256005672|ref|ZP_05430629.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
 gi|281416952|ref|ZP_06247972.1| Radical SAM domain protein [Clostridium thermocellum JW20]
 gi|125712978|gb|ABN51470.1| Radical SAM [Clostridium thermocellum ATCC 27405]
 gi|255990360|gb|EEU00485.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
 gi|281408354|gb|EFB38612.1| Radical SAM domain protein [Clostridium thermocellum JW20]
 gi|316941009|gb|ADU75043.1| Radical SAM domain protein [Clostridium thermocellum DSM 1313]
          Length = 445

 Score = 44.6 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 14/82 (17%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQ----LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
           CRFC   + G    K  R    +    + D+I       E E      TGGEPLL  ++P
Sbjct: 127 CRFC---YAGCTKVKKNRELDKEGFKKVLDIIR-----YEAEVPSVSFTGGEPLLNKNLP 178

Query: 103 -LIQ-ALNKRGFEIAVETNGTI 122
            LI+ A    G  + + TNGT+
Sbjct: 179 ELIKYASKANGMRVNLITNGTL 200


>gi|322384880|ref|ZP_08058541.1| synthesis of sporulation killing factor A-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321150349|gb|EFX43851.1| synthesis of sporulation killing factor A-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 365

 Score = 44.6 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 18/145 (12%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL     ++     C  C       +        V+Q   ++ E    G       + T
Sbjct: 108 CNLDCTFCKNSF---CPVC----KRFEERDEAELTVEQWKRILTELSHFGTSA---VLFT 157

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDW----ICVSPKAGCDLKIKGG 146
           GGEP     +  LI    + G    + TNG +   Q        I V+ K   +  I+  
Sbjct: 158 GGEPTRYPYIHELIDFSIELGMATNLHTNGLVPLKQVPSVLGFHITVTSKRNLNKIIQNY 217

Query: 147 QELKLVFPQVNVSPENYIGFDFERF 171
             +K    +V +  ++++  D ++ 
Sbjct: 218 CNIK---DRVTLLVDDHLFSDVKQI 239


>gi|147920772|ref|YP_685422.1| anaerobic ribonucleoside-triphosphate reductase (glycyl-dependent)
           activating enzyme [uncultured methanogenic archaeon
           RC-I]
 gi|56295595|emb|CAH04836.1| pyruvate formate-lyase activating enzyme [uncultured archaeon]
 gi|110620818|emb|CAJ36096.1| anaerobic ribonucleoside-triphosphate reductase (glycyl-dependent)
           activating enzyme [uncultured methanogenic archaeon
           RC-I]
          Length = 262

 Score = 44.6 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 20/104 (19%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
            + VF R  GC             +C +C  +   ++   G   + +++   I++     
Sbjct: 28  VLTVFFR--GCPF-----------RCPYC-ANPQFLEPDSGEPTDTERVIAEIDK----A 69

Query: 82  EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV--ETNGTIE 123
                  V +GGEPL+Q       A + +G  + V  +TNG   
Sbjct: 70  RNFIDGVVFSGGEPLMQFAAFKTIAAHAKGLGLLVGAQTNGAYP 113


>gi|320160976|ref|YP_004174200.1| hypothetical protein ANT_15720 [Anaerolinea thermophila UNI-1]
 gi|319994829|dbj|BAJ63600.1| hypothetical protein ANT_15720 [Anaerolinea thermophila UNI-1]
          Length = 471

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R + QC  C       +         ++   +I++ W  G     + V TGGEP L+ D+
Sbjct: 146 RCNNQCSHC----YNARSRNFPELPTEKWKTIIQKLWDIG---IPHLVFTGGEPTLRHDL 198

Query: 102 P-LIQALNKRGFEIAVETNGT 121
           P LI+   K G    + TNGT
Sbjct: 199 PDLIEFAEKIGMITGLNTNGT 219


>gi|319957346|ref|YP_004168609.1| radical sam domain protein [Nitratifractor salsuginis DSM 16511]
 gi|319419750|gb|ADV46860.1| Radical SAM domain protein [Nitratifractor salsuginis DSM 16511]
          Length = 376

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 18/101 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR C   +           + + +   I E    G    R+ + +
Sbjct: 33  CNL-----------ACRHC---YSYADPNSEDFLSTEFILGAIPELLKAG---VRFVIFS 75

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           GGEPL++ D+  +  A+ + G    + TNG     + +D I
Sbjct: 76  GGEPLIRKDIFTIADAMRRAGIITYLSTNGLYVSEKNVDRI 116


>gi|302871428|ref|YP_003840064.1| molybdenum cofactor biosynthesis protein A [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574287|gb|ADL42078.1| molybdenum cofactor biosynthesis protein A [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 308

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR +  C +C T  +  +  +  + +  ++  +I      G ++ R   +TGGEP L+ D
Sbjct: 18  DRCNFFCMYCRTKDLCYE--RADQLSKGEIFRIISAFKKLGIQKLR---ITGGEPFLRDD 72

Query: 101 V-PLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
           +  +I+  +  G E I + TNG ++  + I  +  SP    ++ +    + K  F
Sbjct: 73  IFEIIEFAHSIGIENINITTNGWLD-TEKIKKVIKSPLKSVNISLDTLDKKKYRF 126


>gi|77459199|ref|YP_348705.1| radical SAM family protein [Pseudomonas fluorescens Pf0-1]
 gi|77383202|gb|ABA74715.1| quinohemoprotein amine dehydrogenase unknown subunit [Pseudomonas
           fluorescens Pf0-1]
          Length = 477

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 35/132 (26%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR-YC 88
           +GCNL            C +C         +KG + + +      E      +   +   
Sbjct: 110 TGCNL-----------SCTYCY-KEDLTTPSKGVKMSFETAKASFEMLLKQAKNRDQVNL 157

Query: 89  VLTGGEPLLQVDVPLIQAL--------NKRGFEI--AVETNGTIEPPQGIDW-------I 131
           V  GGEPL   + PLI+A+         + G +I  ++ TNGT+     +DW       +
Sbjct: 158 VFFGGEPL--SNYPLIRAMVPYAEARAAQEGKKIDFSLTTNGTLLTEPMVDWLNEHRFGL 215

Query: 132 CVS---PKAGCD 140
            VS   PKA  D
Sbjct: 216 TVSMDGPKAMHD 227


>gi|225571359|ref|ZP_03780355.1| hypothetical protein CLOHYLEM_07457 [Clostridium hylemonae DSM
           15053]
 gi|225159835|gb|EEG72454.1| hypothetical protein CLOHYLEM_07457 [Clostridium hylemonae DSM
           15053]
          Length = 202

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
            +V+++                   +TGGEPL+Q+D    L + L + G    ++T+G
Sbjct: 1   MSVEEVLQGFYSNLP--FYRSGGVTVTGGEPLMQMDFLTELFRDLKRHGVHTCIDTSG 56


>gi|158317459|ref|YP_001509967.1| radical SAM domain-containing protein [Frankia sp. EAN1pec]
 gi|158112864|gb|ABW15061.1| Radical SAM domain protein [Frankia sp. EAN1pec]
          Length = 335

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C             R +V+     +EE             + 
Sbjct: 38  CNL-----------SCTGCG-KIQHPASVLKQRMSVEDALAAVEECG------APVVAIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  ++ AL KR   + + TNG +   + +     SP     L I G +E
Sbjct: 80  GGEPLMHPQIHEIVNALVKRKKFVILCTNG-LLLRKKLKNFTPSPYFTFVLHIDGLKE 136


>gi|148642712|ref|YP_001273225.1| pyruvate formate-lyase activating enzyme, PflA [Methanobrevibacter
           smithii ATCC 35061]
 gi|148551729|gb|ABQ86857.1| pyruvate formate-lyase activating enzyme, PflA [Methanobrevibacter
           smithii ATCC 35061]
          Length = 234

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 18/126 (14%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N+       +    CR+C             + + +++   I +            V++G
Sbjct: 16  NMSLVIFMSKCPLACRYC---HNAELLDDNTQLSFEEIKKEIND----AADFIDAVVISG 68

Query: 93  GEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAGCDL-- 141
           GEPL+Q D  + +++ ++K G +  ++T+G              +D+I +  KA  +   
Sbjct: 69  GEPLVQSDAVIEILKYVHKLGLKTKLDTSGIYPDKLENILKLNILDFISLDVKAPFEKYR 128

Query: 142 KIKGGQ 147
           K+ G  
Sbjct: 129 KVTGSN 134


>gi|269138270|ref|YP_003294970.1| pyruvate formate lyase II activase [Edwardsiella tarda EIB202]
 gi|267983930|gb|ACY83759.1| pyruvate formate lyase II activase [Edwardsiella tarda EIB202]
          Length = 252

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 52/156 (33%), Gaps = 26/156 (16%)

Query: 25  VFCRFSGCNLWSGREQD-----------RLSAQCRFC-------DTDFVGIQGTKGGRYN 66
           VF  F GC        +           R   +C  C       D    G     G    
Sbjct: 2   VF--FKGCPHRCPWCANPESISPAPQTVRREQRCLHCTPCLNDADECPSGAMERIGRTVT 59

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTIEP 124
           + QL   + +  +     G    L+GGE LLQ       +  L + G   A+ET G    
Sbjct: 60  LAQLEAEVMKDVVFFRSSGGGVTLSGGEVLLQAAFATRFLTRLRRLGVHCALETAGDGPA 119

Query: 125 PQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
            + +    +  +   DLKI    +  + L+L  P+ 
Sbjct: 120 SRLLPLASLCDEVLFDLKIMDAERSARLLRLNLPRA 155


>gi|152985021|ref|YP_001348665.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           aeruginosa PA7]
 gi|150960179|gb|ABR82204.1| coenzyme PQQ biosynthesis protein E [Pseudomonas aeruginosa PA7]
          Length = 370

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 15/112 (13%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C          +G      +  ++  +    G  +  +   +
Sbjct: 4   PLWLLAELTYRCPLQCPYCSNPLEF--AREGAELGTAEWIEVFRQARELGAAQLGF---S 58

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134
           GGEPLL Q    LI+A    GF   + T+G              G+D + +S
Sbjct: 59  GGEPLLRQDLAELIEAGRGLGFYTNLITSGIGLDEARLARFAEAGLDHVQIS 110


>gi|88705524|ref|ZP_01103234.1| Molybdenum cofactor biosynthesis protein A [Congregibacter
           litoralis KT71]
 gi|88700037|gb|EAQ97146.1| Molybdenum cofactor biosynthesis protein A [Congregibacter
           litoralis KT71]
          Length = 336

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 19/90 (21%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  FV     K     +++LA + +     G ++ R   LTGGEPL+
Sbjct: 26  DRCDFRCVYCMAEDMQFV----PKSEVLTLEELAQVAQAFVRLGVRKIR---LTGGEPLV 78

Query: 98  -QVDVPLIQALNK-RGFEIAVE----TNGT 121
               + L++ L    G E   E    TNG+
Sbjct: 79  RHNIMELVEQLGAMEGLE---ELVMTTNGS 105


>gi|218681519|ref|ZP_03529406.1| putative biosynthetic heme protein [Rhizobium etli CIAT 894]
          Length = 422

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 21/120 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCV 89
           CNL            C  C   ++   G+K  G  +N++ +  LIE+    G    R   
Sbjct: 49  CNL-----------GCHHC---YIAGVGSKAKGIDFNLETIQGLIEQALPNGL---RKVK 91

Query: 90  LTGGEPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
           ++GGEP++  + + +++ L   G  E+  ETNGT+     I+ +   P     + +    
Sbjct: 92  VSGGEPMVHKEFMAVMEYLASCGLKELVFETNGTLFDEFTIEQLSRLPNLTVFISLDHFD 151


>gi|254478005|ref|ZP_05091389.1| radical SAM domain protein [Carboxydibrachium pacificum DSM 12653]
 gi|214036009|gb|EEB76699.1| radical SAM domain protein [Carboxydibrachium pacificum DSM 12653]
          Length = 292

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 16/101 (15%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +CD  +   +  K     V+ +   I    ++        ++T
Sbjct: 13  CNL-----------RCSYCD--YSNKRRDKKSNLLVEDVERFI--LAMSDYMNLGEIMIT 57

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           GGEP L  ++   I  + K    I++ TNGT+   + I W+
Sbjct: 58  GGEPFLLSNIEYWILTMKKYSPNISILTNGTLIDSEQIRWL 98


>gi|219851443|ref|YP_002465875.1| molybdenum cofactor biosynthesis protein A [Methanosphaerula
           palustris E1-9c]
 gi|219545702|gb|ACL16152.1| molybdenum cofactor biosynthesis protein A [Methanosphaerula
           palustris E1-9c]
          Length = 291

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
              C +C       +     + + +++ ++I    +  +   R    TGGEPLL+ D+  
Sbjct: 22  DLNCIYC---HAEGEVNPSVQLSAEEIGEII---RVATDFGVRSVKFTGGEPLLREDLTS 75

Query: 104 IQALNKRGFEIAVETNGTIEPPQGID 129
           I      G E ++ TN T    +  D
Sbjct: 76  IIQAVPSGIETSITTNATHLADKAYD 101


>gi|253573708|ref|ZP_04851051.1| radical SAM domain-containing protein [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251847236|gb|EES75241.1| radical SAM domain-containing protein [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 294

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 20/94 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC          +     V+    ++++     +    +    
Sbjct: 15  CNL-----------ACSFC-----PPTHRQAQFIKVEDFRKILDDIKPHTDYIYFHVK-- 56

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124
            GEPLL   +  L+   +++GF++ + TNGT+ P
Sbjct: 57  -GEPLLHPKIDQLLDISHEKGFKVNITTNGTLLP 89


>gi|182416944|ref|ZP_02948328.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum
           5521]
 gi|237668693|ref|ZP_04528677.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182379242|gb|EDT76743.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum
           5521]
 gi|237657041|gb|EEP54597.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 305

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
           G    + ++ D++E+      +      L+GGEPL+Q +  + L++   +R    A+ET 
Sbjct: 108 GKLMTIKEILDIVEKDSDFYSRSEGGITLSGGEPLMQGEFTINLLKEAKRRRMNTAIETC 167

Query: 120 G 120
           G
Sbjct: 168 G 168


>gi|58038921|ref|YP_190885.1| molybdenum cofactor biosynthesis protein A [Gluconobacter oxydans
           621H]
 gi|58001335|gb|AAW60229.1| Molybdenum cofactor biosynthesis protein A [Gluconobacter oxydans
           621H]
          Length = 351

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 20/123 (16%)

Query: 28  RFSGCNLWSGREQ--DRLSAQCRFC---DTDFVGIQG-TKGGRYNVDQLADLIEEQWITG 81
           RFS   L   R    DR + +C +C    T     +      R + D++  +       G
Sbjct: 19  RFSR-PLHDLRISVMDRCNFRCPYCMPEATYHEHFRFLEPKERLSFDEIERVARVAVSLG 77

Query: 82  EKEGRYCVLTGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTI-------EPPQGIDWI 131
            ++ R   LTGGEPLL+  +P L+  L    G E IA+ TNG +           G++ +
Sbjct: 78  VRKLR---LTGGEPLLRPKLPELVARLASIEGVEDIALTTNGVLLERHVQDLKEAGLNRV 134

Query: 132 CVS 134
            VS
Sbjct: 135 TVS 137


>gi|271500817|ref|YP_003333842.1| pyruvate formate-lyase activating enzyme [Dickeya dadantii Ech586]
 gi|270344372|gb|ACZ77137.1| pyruvate formate-lyase activating enzyme [Dickeya dadantii Ech586]
          Length = 246

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 59/180 (32%), Gaps = 42/180 (23%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V++L   +          G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEELMKEVVTYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAG 138
                +GGE +LQ +      +A +++G    ++TNG +        + +D         
Sbjct: 72  GGVTASGGEAILQAEFVRDWFRACHEQGINTCLDTNGFVRRYDPVIDELLD--------A 123

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
            DL +   ++L     Q  V   N+   DF R+          + N    I Y    P W
Sbjct: 124 TDLVMLDLKQLNDEIHQNLVGVSNHRTLDFARY--------LAKRNQRTWIRYVVV-PGW 174


>gi|188587083|ref|YP_001918628.1| glycyl-radical enzyme activating protein family [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179351770|gb|ACB86040.1| glycyl-radical enzyme activating protein family [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 310

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           G +   +++ + +E+  +  E+       +GGEPL+QVD     +  L ++G    V+T+
Sbjct: 112 GEQMTANKVIEEVEKDKVFFEESKGGVTFSGGEPLMQVDFLYETLCRLKEKGIHTTVDTS 171

Query: 120 GTIEP 124
           G +  
Sbjct: 172 GYVPW 176


>gi|6685644|sp|O27593|MOAA_METTH RecName: Full=Probable molybdenum cofactor biosynthesis protein A
          Length = 305

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 29/126 (23%)

Query: 21  GRVAVFCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           GR  +  R S    CN+            C +C         +  G  +   +  L    
Sbjct: 8   GRPVMSLRLSITGRCNV-----------NCIYC---HRDGMTSSRGELSAADIEKLCRVA 53

Query: 78  WITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFE-IAVETNGTI-------EPPQGI 128
              G  + R   L+GGEPL++ D+  +++ +N  GF  I++ TNGT+           G+
Sbjct: 54  SDLGVGKIR---LSGGEPLIRDDIVEIVERINNIGFRDISITTNGTLLEGYSAALSEAGL 110

Query: 129 DWICVS 134
           D + VS
Sbjct: 111 DRVNVS 116


>gi|171184855|ref|YP_001793774.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoproteus neutrophilus V24Sta]
 gi|170934067|gb|ACB39328.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermoproteus neutrophilus V24Sta]
          Length = 239

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 20/107 (18%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
             GCNL      +   A+ + C            G  +V++L D +       +      
Sbjct: 24  LCGCNLRCPFCHNWRIAERQNC------------GELDVERLLDELARAKPYIDYLH--- 68

Query: 89  VLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI--EPPQGIDWI 131
            +TGGEPLLQ      L +   + G   ++ TN T+     + ID I
Sbjct: 69  -VTGGEPLLQAEELRHLFKRAGEAGVARSLNTNATLTKALEKVIDEI 114


>gi|147919895|ref|YP_686354.1| putative molybdopterin biosynthesis protein A [uncultured
           methanogenic archaeon RC-I]
 gi|121685400|sp|Q0W3L5|MOAA_UNCMA RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|110621750|emb|CAJ37028.1| putative molybdopterin biosynthesis protein A [uncultured
           methanogenic archaeon RC-I]
          Length = 307

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 24/110 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C       +   G    V+++A +     I           +
Sbjct: 21  CNL-----------KCIYC---HNEGEEDSGSEITVEEVAQI---ARICARYGVDKIKFS 63

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS 134
           GGEPLL+ D   I        +++V TNGT+           G+D + VS
Sbjct: 64  GGEPLLRRDFDEILRALPPMRDVSVTTNGTLLAARAESLKESGLDRVNVS 113


>gi|37521317|ref|NP_924694.1| hypothetical protein glr1748 [Gloeobacter violaceus PCC 7421]
 gi|35212314|dbj|BAC89689.1| glr1748 [Gloeobacter violaceus PCC 7421]
          Length = 339

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
                 + GGEPLL   +  +++ L  RG  + + TN  I   + +D    S      + 
Sbjct: 72  GAPIVTIPGGEPLLHPQIDQIVEGLVDRGKFVYLCTN-AILLEKNLDKFTPSDYFSFSVH 130

Query: 143 IKGGQE 148
           + G +E
Sbjct: 131 LDGLRE 136


>gi|302340636|ref|YP_003805842.1| glycyl-radical enzyme activating protein family [Spirochaeta
           smaragdinae DSM 11293]
 gi|301637821|gb|ADK83248.1| glycyl-radical enzyme activating protein family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 307

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 39/140 (27%), Gaps = 45/140 (32%)

Query: 24  AVFCRFSGCNLWSGREQDRLS-------------------------------------AQ 46
            VF  F GC L  G   +                                        A+
Sbjct: 31  TVF--FQGCPLRCGWCSNPEGQLKKTRIFYYESLCIHCGKCISVCPNKAIGPAFETIQAR 88

Query: 47  CRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101
           C  C       + G +   G    V  + ++     +     G    L+GGEP++  +  
Sbjct: 89  CVGCGECASVCYTGARQVSGTPMTVQDVVEICLADSMFYFHSGGGVTLSGGEPVMFSEFS 148

Query: 102 -PLIQALNKRGFEIAVETNG 120
             L++ L       A ET G
Sbjct: 149 CELLKELKAHNISTAFETCG 168


>gi|315147097|gb|EFT91113.1| hypothetical protein HMPREF9497_01994 [Enterococcus faecalis
           TX4244]
          Length = 304

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 16/82 (19%)

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN----KRGFEIAVETN 119
           R++ DQ+  + +E     + + +  +++GGEPLL  +  LI  L     K G  I + TN
Sbjct: 3   RFSEDQILSIFKE---ISKLKCQNVIISGGEPLLYKN--LINLLRIGKQKYGLCIGLVTN 57

Query: 120 GTI-------EPPQGIDWICVS 134
           GT+            +D++ +S
Sbjct: 58  GTMVDDYLAQRLSNVVDYVQIS 79


>gi|238757610|ref|ZP_04618794.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia aldovae ATCC
           35236]
 gi|238704115|gb|EEP96648.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia aldovae ATCC
           35236]
          Length = 246

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 44/184 (23%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G    V++L           
Sbjct: 25  VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134
              G     +GGE +LQ +      +A ++ G    ++TNG +        + +D     
Sbjct: 68  NASGGGVTASGGEAILQAEFVRDWFRACHEEGIHTCLDTNGFVRRYDPVIDELLD----- 122

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
                DL +   +++     Q  V   N+   +F R+          + N    I Y   
Sbjct: 123 ---ATDLVMLDLKQMDDSVHQNLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV 171

Query: 195 NPKW 198
            P W
Sbjct: 172 -PGW 174


>gi|162451211|ref|YP_001613578.1| hypothetical protein sce2939 [Sorangium cellulosum 'So ce 56']
 gi|161161793|emb|CAN93098.1| moaA3 [Sorangium cellulosum 'So ce 56']
          Length = 373

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 48/138 (34%), Gaps = 25/138 (18%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR    C +C        G   G+        + E     G +  R   LTGGEPLL  +
Sbjct: 67  DRCDFACTYC--RPSRHDGYADGKLMTAAWRTMFEALRDAGIRRVR---LTGGEPLLHPE 121

Query: 101 V-PLIQALNKRGFE-IAVETNGT--------------IEPPQGIDWICVSPKAGCDLKIK 144
           +  ++  L   GFE +A+ TN +                    ID   + P    +  + 
Sbjct: 122 IVSIVGCLAALGFEDLALTTNASQLARLAGALRAAGLHRLNVSID--TLDPGRFGE--MT 177

Query: 145 GGQELKLVFPQVNVSPEN 162
            G EL  V   ++ +   
Sbjct: 178 RGGELARVLDGIDAAIAA 195


>gi|91782007|ref|YP_557213.1| GTP cyclohydrolase subunit MoaA [Burkholderia xenovorans LB400]
 gi|91685961|gb|ABE29161.1| GTP cyclohydrolase subunit MoaA [Burkholderia xenovorans LB400]
          Length = 356

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 25/153 (16%)

Query: 41  DRLSAQCRFC---DT---DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           D+ + +C +C   +T   D+  +  +   R + +Q+  L +   + G ++ R   +TGGE
Sbjct: 32  DQCNFRCTYCMPRETFGADYPFLASS--ERMSFEQILKLAKAFTLLGVEKIR---ITGGE 86

Query: 95  PLLQVDVP-LIQALNKR----GFEI--AVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+  +  LI+ L K     G  +  A+ TNG++           G+  + VS  A  D
Sbjct: 87  PLLRRGLESLIEQLAKLTTASGKPVELALTTNGSLLAAKARSLRDAGLGRVTVSLDAVED 146

Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
              +   ++ +   ++    E       E   +
Sbjct: 147 AVFRRMSDVDMSVARILDGIEAARAVGLEPIKV 179


>gi|319790529|ref|YP_004152162.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
 gi|317115031|gb|ADU97521.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
          Length = 219

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 19/96 (19%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            R   CNL      ++  A               +  R+N  +L + +    + G     
Sbjct: 30  LRL--CNLNCYHCHNKHLA-------------PKEYERFNYGELEEKLSLCKLLG---VE 71

Query: 87  YCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT 121
             +++GGEP L+  +   ++ + ++GF + ++TNGT
Sbjct: 72  LVIVSGGEPTLEPRLEEGLKFIKEKGFPVRLDTNGT 107


>gi|71280570|ref|YP_267606.1| pyrroloquinoline quinone biosynthesis protein PqqE [Colwellia
           psychrerythraea 34H]
 gi|71146310|gb|AAZ26783.1| coenzyme PQQ synthesis protein E [Colwellia psychrerythraea 34H]
          Length = 378

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 67/191 (35%), Gaps = 43/191 (22%)

Query: 33  NLWSGREQDRL-SAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
            LW   E        C +C       DT             N +Q  D++ +    G  +
Sbjct: 12  PLWLLAELTYDCPLHCPYCSNPTELGDTK---------DELNTEQWLDVLTQARAMGAVQ 62

Query: 85  GRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143
             +   +GGEPLL+ D+  +++   + GF   + T+G          I ++ K    LK+
Sbjct: 63  LGF---SGGEPLLRKDLEQMVKHSRELGFYTNLITSG----------IGLTEKRIAKLKV 109

Query: 144 KGGQELKLVFPQVNVSPENYI---GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW-- 198
            G   +++ F   +    + I   G  FE+     M      +   + +++         
Sbjct: 110 AGLDHIQISFQGADPEMNDIIAGRGNAFEQKF--KMAQSVKAQGYPMVLNFVISKQNISQ 167

Query: 199 -----RLSVQT 204
                RLS Q 
Sbjct: 168 VEDIMRLSCQL 178


>gi|117928906|ref|YP_873457.1| radical SAM domain-containing protein [Acidothermus cellulolyticus
           11B]
 gi|117649369|gb|ABK53471.1| Radical SAM domain protein [Acidothermus cellulolyticus 11B]
          Length = 334

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI-QALNKRGFEIAVETNGTI 122
           R  V+Q    IEE             + GGEPL+  ++ +I + L KR   + + TN  +
Sbjct: 58  RMPVEQAIAAIEECG------APMVSIAGGEPLMHPEIDVIVRELVKRKKFVYLCTN-AL 110

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQE 148
              + +D    SP     + I G +E
Sbjct: 111 LMRKKLDLFKPSPYFSWAVHIDGLEE 136


>gi|257091938|ref|YP_003165579.1| Radical SAM domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044462|gb|ACV33650.1| Radical SAM domain protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 398

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 25/112 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         +      DTDF        G    D++  ++++            +L+
Sbjct: 36  CNLTCKHCYSISA------DTDF-------PGELATDEIFVVMDDLK---GFRVPVLILS 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGI--------DWICVS 134
           GGEPLL+ D+  + +     GF + + +NGT+     I        D++ VS
Sbjct: 80  GGEPLLRPDIFDIARRAKSMGFYVGLSSNGTLIDAANIARIADCDFDYVGVS 131


>gi|238928202|ref|ZP_04659962.1| molybdenum cofactor biosynthesis protein A [Selenomonas flueggei
           ATCC 43531]
 gi|238884162|gb|EEQ47800.1| molybdenum cofactor biosynthesis protein A [Selenomonas flueggei
           ATCC 43531]
          Length = 331

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 26/114 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +CR+C    +   G K  R+ +V    +++ +         R   L
Sbjct: 20  CNL-----------RCRYC----MPAHGVKKLRHADVLTYEEILRDVRALAALGVRKVRL 64

Query: 91  TGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134
           TGGEPL++ D+  L++ L +  G E +A+ TNG +           G+D + +S
Sbjct: 65  TGGEPLVRRDITRLVRGLKEIPGIETVALTTNGVLLGTMMDELLDAGLDAVNLS 118


>gi|146302363|ref|YP_001196954.1| molybdenum cofactor biosynthesis protein A [Flavobacterium
           johnsoniae UW101]
 gi|146156781|gb|ABQ07635.1| GTP cyclohydrolase subunit MoaA [Flavobacterium johnsoniae UW101]
          Length = 335

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 16/104 (15%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              CNL           +C +C      +   K      D++  + +     G  + R  
Sbjct: 24  LEKCNL-----------RCTYCMPADGIVLSPKASLMTADEIFGIAQTFAQNGVDKIR-- 70

Query: 89  VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI 131
            LTGGEPLL+ D P ++  L      ++V TNG I   + ID +
Sbjct: 71  -LTGGEPLLRKDFPEIVSKLAVLDVSLSVTTNG-ILIDRHIDVL 112


>gi|78187401|ref|YP_375444.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273]
 gi|78167303|gb|ABB24401.1| GTP cyclohydrolase subunit MoaA [Chlorobium luteolum DSM 273]
          Length = 339

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 27/117 (23%)

Query: 28  RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
           R   CNL           +C +C        GT     +  ++  +I      G K+ R 
Sbjct: 28  RL--CNL-----------RCSYC-MREEHESGTAAAMMSFSEVTAIIRALAAMGIKKVR- 72

Query: 88  CVLTGGEPLLQVDVP--LIQALNKRGFE-IAVETNG-------TIEPPQGIDWICVS 134
             LTGGEPLL+ D+   ++ A    G E + + TNG             GID I +S
Sbjct: 73  --LTGGEPLLRNDISDIVLAAKQTPGIEKVTLTTNGLLLDRHLDRLLEAGIDAINIS 127


>gi|33593670|ref|NP_881314.1| molybdenum cofactor biosynthesis protein A [Bordetella pertussis
           Tohama I]
 gi|33563743|emb|CAE42983.1| molybdenum cofactor biosynthesis protein [Bordetella pertussis
           Tohama I]
          Length = 365

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 25/114 (21%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D+ +  +  +     + +++  L  +    G ++ R   LTGGE
Sbjct: 46  DRCNFRCTYCMPREVFDSSYAFMPHS--ALLSFEEITRLAAQFARLGVEKIR---LTGGE 100

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEPP-------QGIDWICVS 134
           PLL+ ++  L+  L +      R  ++ + TNG++           G+  + VS
Sbjct: 101 PLLRKNIETLVGMLAELRTPAGRPLDLTLTTNGSLLARKAAALKQAGLSRVTVS 154


>gi|256828055|ref|YP_003156783.1| molybdenum cofactor biosynthesis protein A [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577231|gb|ACU88367.1| molybdenum cofactor biosynthesis protein A [Desulfomicrobium
           baculatum DSM 4028]
          Length = 330

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C       + T      +    ++ E   +  E       LTGGEP  + D
Sbjct: 19  DRCNLRCLYC---RPQSEWTFMPHEQILSFEEMAELVDVAKEAGVEKVRLTGGEPFARKD 75

Query: 101 -VPLIQALNKR--GFEIAVETNGTI 122
            +P    L+ +    ++ + TNGT+
Sbjct: 76  FIPFTGRLHAKYPDLDLRITTNGTL 100


>gi|74316089|ref|YP_313829.1| Elongator protein 3/MiaB/NifB [Thiobacillus denitrificans ATCC
           25259]
 gi|74055584|gb|AAZ96024.1| Elongator protein 3/MiaB/NifB [Thiobacillus denitrificans ATCC
           25259]
          Length = 399

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 14/111 (12%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            +       R +  C+ C +  +       G    D++  ++++            +L+G
Sbjct: 26  PVVIWNLVRRCNLTCKHCYS--ISADKDFPGELGTDEVFAVMDDLKR---FRVPVLILSG 80

Query: 93  GEPLLQVDVPLI-QALNKRGFEIAVETNGTI--------EPPQGIDWICVS 134
           GEPLL+ D+  I Q     GF + + +NGT+            G D++ VS
Sbjct: 81  GEPLLRPDIYAIAQRAKDMGFYVGLSSNGTLIDEHNIERIAAIGFDYVGVS 131


>gi|295698854|ref|YP_003606747.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. CCGE1002]
 gi|295438067|gb|ADG17236.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. CCGE1002]
          Length = 412

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVL 90
            LW   E   R    C FC   +  +  T   R     Q  D++ E    G  +  +   
Sbjct: 26  PLWLLAELTYRCPLHCAFC---YNPLDYTDHNRELTTGQWLDVLREARALGAVQLGF--- 79

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           +GGEPL++ DV  L++  ++ GF   + T+G
Sbjct: 80  SGGEPLVRDDVEVLVEEAHRLGFYTNLITSG 110


>gi|226944168|ref|YP_002799241.1| MoaA, NifB, PqqE, radical SAM superfamily protein [Azotobacter
           vinelandii DJ]
 gi|226719095|gb|ACO78266.1| MoaA, NifB, PqqE, radical SAM superfamily protein [Azotobacter
           vinelandii DJ]
          Length = 377

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 27/138 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C          +     R +V+     ++E       +     + 
Sbjct: 38  CNLAC--------AGCG----KIDHPKDVLRKRMSVEDALRAVDE------CDAPVVSIP 79

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSP----KAGCDLKIKGG 146
           GGEPL+  ++P +++ +  R   + + TN  I  P+ ID    SP        D   K  
Sbjct: 80  GGEPLIHKEMPQIVRGIVARKKFVYLCTN-AILLPKHIDEYEPSPYFTWSIHLDGLQKRH 138

Query: 147 QE---LKLVFPQVNVSPE 161
            E   +K VF +   + +
Sbjct: 139 DESVCMKGVFDKAVAAIK 156


>gi|186471270|ref|YP_001862588.1| coenzyme PQQ biosynthesis protein E [Burkholderia phymatum STM815]
 gi|184197579|gb|ACC75542.1| coenzyme PQQ biosynthesis protein E [Burkholderia phymatum STM815]
          Length = 405

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90
            LW   E   R    C FC   +  +  T      +  Q  D++++    G  +  +   
Sbjct: 23  PLWLLAELTYRCPLHCAFC---YNPVNYTDHRDELSTAQWIDVLQQARKLGAAQLGF--- 76

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           +GGEPL++ D+  L+   ++ GF   + T+G
Sbjct: 77  SGGEPLMRDDLEALVAEAHRLGFYTNLITSG 107


>gi|21230455|ref|NP_636372.1| molybdenum cofactor biosynthesis protein A [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66769551|ref|YP_244313.1| molybdenum cofactor biosynthesis protein A [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|24211977|sp|Q8PBX1|MOAA_XANCP RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|81304494|sp|Q4URN0|MOAA_XANC8 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|21112018|gb|AAM40296.1| molybdenum cofactor biosynthesis protein A [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66574883|gb|AAY50293.1| molybdenum cofactor biosynthesis protein A [Xanthomonas campestris
           pv. campestris str. 8004]
          Length = 339

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 16/102 (15%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
           +C +C   D            R + DQL  L+      G  + R   LTGGEPLL+ ++P
Sbjct: 32  RCGYCMPADRVPDDYGLDADQRLSFDQLETLVRAFVAVGVTKLR---LTGGEPLLRKNLP 88

Query: 103 -LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVS 134
            LIQ L    G E +A+ TNG +   Q +         I VS
Sbjct: 89  VLIQRLAAIEGIEDLALTTNGALLARQAVALRQAGLRRITVS 130


>gi|323474370|gb|ADX84976.1| Fe-S oxidoreductase [Sulfolobus islandicus REY15A]
          Length = 378

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            + +     + + +C  C   ++            ++   LI+E     E      +++G
Sbjct: 36  PVVTWNLTLKCNLKCLHC---YINSSPEGEDGSTTEEALRLIDEM---AEMRIPLVIMSG 89

Query: 93  GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GEPL++ D   L      +G ++A+ TNGT+
Sbjct: 90  GEPLMRRDFFELASYARIKGIKLALSTNGTL 120


>gi|260776178|ref|ZP_05885073.1| pyruvate formate-lyase activating enzyme [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260607401|gb|EEX33666.1| pyruvate formate-lyase activating enzyme [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 215

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 14/132 (10%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101
           +C +C   DT         G    V+++ +  +         G     +GGE +LQ +  
Sbjct: 2   RCMYCHNRDT----WDTHGGKEVTVEEIINEAKSYRHFMNASGGGVTCSGGEAMLQPEFV 57

Query: 102 -PLIQALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
               ++    G    ++TNG I    + ID +        DL +   + +K       + 
Sbjct: 58  RDFFRSAKAEGIHTCLDTNGYIRKHTEVIDEVL----EATDLVMLDLKHMKDEVHHDFIG 113

Query: 160 PENYIGFDFERF 171
             N    DF R+
Sbjct: 114 VSNRRTLDFARY 125


>gi|239623137|ref|ZP_04666168.1| radical SAM [Clostridiales bacterium 1_7_47_FAA]
 gi|239522504|gb|EEQ62370.1| radical SAM [Clostridiales bacterium 1_7_47FAA]
          Length = 276

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 56/176 (31%), Gaps = 44/176 (25%)

Query: 24  AVFCRFSGCN---LWSGREQDRLSAQ---------------------------CRFCDTD 53
           AVF    GCN   L+    +     +                           C  CDT 
Sbjct: 22  AVF--LQGCNQNCLYCHNPETINLCRNCGACVKTCPAGALSMADGLVSYDYKACCNCDTC 79

Query: 54  F---VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALN 108
                     K      +QL D ++  +            +GGE  L +D        + 
Sbjct: 80  LKTCAYDASPKIRNMTPEQLYDEVKAYFPFISG----ITTSGGECSLYLDFLKEFYTLVK 135

Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE--LKLVFPQVNVSPEN 162
             G    ++TNG +      D + V+ K   DLK  G +E  +KL   ++ +  EN
Sbjct: 136 AAGRTTYMDTNGQVPLWDRTDLLEVTDKTMIDLK-AGSEEDHMKLTGRELGIPVEN 190


>gi|222150403|ref|YP_002559556.1| molybdenum cofactor biosynthesis protein MoaA homolog [Macrococcus
           caseolyticus JCSC5402]
 gi|222119525|dbj|BAH16860.1| molybdenum cofactor biosynthesis protein MoaA homolog [Macrococcus
           caseolyticus JCSC5402]
          Length = 336

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D D+V +   K    + ++L  + +     G K+ R   +TGG
Sbjct: 21  DRCNFRCTYCMPKEIFGD-DYVFL--PKDELLSFEELTRIAKVYAQLGVKKVR---ITGG 74

Query: 94  EPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           EPLL+ D+P LI+ ++   G E I + TNG
Sbjct: 75  EPLLRRDLPDLIREIHAIEGIEDIGLTTNG 104


>gi|312880208|ref|ZP_07740008.1| GTP cyclohydrolase subunit MoaA [Aminomonas paucivorans DSM 12260]
 gi|310783499|gb|EFQ23897.1| GTP cyclohydrolase subunit MoaA [Aminomonas paucivorans DSM 12260]
          Length = 326

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLT 91
           N       DR + +C +C     GI   +  R    +++  L E     G +  R+   T
Sbjct: 13  NYVRISITDRCNYRCVYC-MPPEGIPALEHHRILRYEEILFLCEALVAMGVRRVRF---T 68

Query: 92  GGEPLLQVD-VPLIQALNKR--GFEIAVETNGTIEPPQGIDWICVS 134
           GGEPL++   +P ++ L +R     +A+ TNG++  P   D   + 
Sbjct: 69  GGEPLVRKGVLPFLKELRERFPSLRVALTTNGSLLKPYAQDLAALD 114


>gi|168177874|ref|ZP_02612538.1| putative radical SAM domain protein [Clostridium botulinum NCTC
           2916]
 gi|182671556|gb|EDT83530.1| putative radical SAM domain protein [Clostridium botulinum NCTC
           2916]
          Length = 413

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 23/121 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL               CD             +   ++ + +++     E +     +T
Sbjct: 102 CNLHCKHCMVNADK----CDIK---------ENFTTKEIINALDKII---EAKPEAITIT 145

Query: 92  GGEPLLQVD-VPLIQALNKR-GFEIAVETNGTIEPPQGIDWI--CVSPKAGCDLKIKGGQ 147
           GGEPL++ D + +I+ L      +I + TN T+     I+ I  CVS     D+ I G  
Sbjct: 146 GGEPLVRPDFIQIIKYLKNNYNGKIGLMTNATLITENNINDIISCVS---SIDISIDGVD 202

Query: 148 E 148
           E
Sbjct: 203 E 203


>gi|78046661|ref|YP_362836.1| molybdenum cofactor biosynthesis protein A [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|78035091|emb|CAJ22736.1| molybdenum cofactor biosynthesis protein A [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
          Length = 343

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 9/83 (10%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
           +C +C   D            R + DQL  L+      G  + R   LTGGEPLL+ D+P
Sbjct: 36  RCGYCMPADRVPDDYGFDSQQRLSFDQLETLVRAFVSVGVTKVR---LTGGEPLLRRDLP 92

Query: 103 -LIQALNK-RGFE-IAVETNGTI 122
            LI  L    G E +A+ TNGT+
Sbjct: 93  SLIARLTAIEGIEDLALTTNGTL 115


>gi|312143440|ref|YP_003994886.1| molybdenum cofactor biosynthesis protein A [Halanaerobium sp.
           'sapolanicus']
 gi|311904091|gb|ADQ14532.1| molybdenum cofactor biosynthesis protein A [Halanaerobium sp.
           'sapolanicus']
          Length = 321

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 12/103 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C       + +     + + L  +I+     G  + R   +TGGEPL+++ 
Sbjct: 21  DRCNLRCHYCMPAEGIKEKSHSEILSYEDLIKIIKTAQKIGVDKVR---ITGGEPLVRLG 77

Query: 101 VP-LIQALNKRGFE-IAVETNGTIEPP-------QGIDWICVS 134
           V  LI  L+K G + +++ TNG +           G+D I +S
Sbjct: 78  VEDLIAGLSKLGLKDLSMTTNGVLLAEKAAELKKAGLDRINIS 120


>gi|300704632|ref|YP_003746235.1| molybdenum cofactor biosynthesis protein a [Ralstonia solanacearum
           CFBP2957]
 gi|299072296|emb|CBJ43629.1| Molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum
           CFBP2957]
          Length = 373

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 25/136 (18%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  ++ +     + +++  ++      G ++ R   LTGGE
Sbjct: 52  DRCNFRCVYCMPKDVFDKDYRFLRHS--ELLSFEEIERMVRLFIEHGVEKIR---LTGGE 106

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ D+  L++ L +      +  ++ + TNG +           G+  + VS  A  D
Sbjct: 107 PLLRKDIERLVEMLARLTTRDGKPLDLTLTTNGALLARKAQSLKDAGLKRVTVSLDAIDD 166

Query: 141 LKIKGGQELKLVFPQV 156
              +   ++     +V
Sbjct: 167 ATFRRMNDVDFAVGEV 182


>gi|295100160|emb|CBK89249.1| glycyl-radical enzyme activating protein family [Eubacterium
           cylindroides T2-87]
          Length = 300

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 6/113 (5%)

Query: 46  QCRFCDTDF----VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--V 99
            C  C T       G     G   ++D +   + +     E+      ++GGEP +Q   
Sbjct: 82  ACIHCKTCENNCPAGAINFIGDAVSIDDIVTEVLKDKPFYEESNGGVTISGGEPFVQYNA 141

Query: 100 DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
              L+    +    +AVET G        D I        DLK      + LV
Sbjct: 142 LKALLNKFFEEDISVAVETTGDTHWKNIEDLIPYIDYFLFDLKFPTANRISLV 194


>gi|268324243|emb|CBH37831.1| conserved hypothetical protein, radical SAM superfamily [uncultured
           archaeon]
          Length = 282

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 20/98 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY- 87
            SGCN            +C+ C   F   +   G    V++L + I              
Sbjct: 29  LSGCNF-----------KCKGC---FSIARDPVGESMTVNELINFIRRSNWIYSNITPLE 74

Query: 88  -CVLTGGEPLLQVD--VPLIQALNKR--GFEIAVETNG 120
             ++TGGEP L  +  + L++ L  +     I + TNG
Sbjct: 75  GAIITGGEPTLDKNFLLDLVRKLKTKVDVKHITLSTNG 112


>gi|207743614|ref|YP_002260006.1| molybdenum cofactor biosynthesis protein a [Ralstonia solanacearum
           IPO1609]
 gi|206595013|emb|CAQ61940.1| molybdenum cofactor biosynthesis protein a [Ralstonia solanacearum
           IPO1609]
          Length = 391

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 25/136 (18%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  ++ +     + +++  ++      G ++ R   LTGGE
Sbjct: 70  DRCNFRCVYCMPKDVFDKDYRFLRHS--ELLSFEEIERMVRLFIEHGVEKIR---LTGGE 124

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ D+  L++ L +      +  ++ + TNG +           G+  + VS  A  D
Sbjct: 125 PLLRKDIERLVEMLARLTTRDGKPLDLTLTTNGALLARKAQSLKDAGLKRVTVSLDAIDD 184

Query: 141 LKIKGGQELKLVFPQV 156
              +   ++     +V
Sbjct: 185 ATFRRMNDVDFAVGEV 200


>gi|207725239|ref|YP_002255635.1| molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum
           MolK2]
 gi|206590473|emb|CAQ37435.1| molybdenum cofactor biosynthesis protein a [Ralstonia solanacearum
           MolK2]
          Length = 391

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 25/136 (18%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  ++ +     + +++  ++      G ++ R   LTGGE
Sbjct: 70  DRCNFRCVYCMPKDVFDKDYRFLRHS--ELLSFEEIERMVRLFIEHGVEKIR---LTGGE 124

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ D+  L++ L +      +  ++ + TNG +           G+  + VS  A  D
Sbjct: 125 PLLRKDIERLVEMLARLTTRDGKPLDLTLTTNGALLARKAQSLKDAGLKRVTVSLDAIDD 184

Query: 141 LKIKGGQELKLVFPQV 156
              +   ++     +V
Sbjct: 185 ATFRRMNDVDFAVGEV 200


>gi|83748466|ref|ZP_00945488.1| Molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum
           UW551]
 gi|83724877|gb|EAP72033.1| Molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum
           UW551]
          Length = 373

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 25/136 (18%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  ++ +     + +++  ++      G ++ R   LTGGE
Sbjct: 52  DRCNFRCVYCMPKDVFDKDYRFLRHS--ELLSFEEIERMVRLFIEHGVEKIR---LTGGE 106

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ D+  L++ L +      +  ++ + TNG +           G+  + VS  A  D
Sbjct: 107 PLLRKDIERLVEMLARLTTRDGKPLDLTLTTNGALLARKAQSLKDAGLKRVTVSLDAIDD 166

Query: 141 LKIKGGQELKLVFPQV 156
              +   ++     +V
Sbjct: 167 ATFRRMNDVDFAVGEV 182


>gi|114775695|ref|ZP_01451263.1| pyruvate formate lyase activating enzyme [Mariprofundus
           ferrooxydans PV-1]
 gi|114553806|gb|EAU56187.1| pyruvate formate lyase activating enzyme [Mariprofundus
           ferrooxydans PV-1]
          Length = 264

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 59/178 (33%), Gaps = 45/178 (25%)

Query: 26  FCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
           F   SGC             +C +C   DT    I+   G    VD + + I E      
Sbjct: 47  FV--SGC-----------QFRCLYCHNPDT----IKMHNGTLRTVDHVLEEIAEFAAFLR 89

Query: 83  KEGRYCVLTGGEPLLQVDV---PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139
             G    ++GGEPL+Q D        A +      A++T G +      +W         
Sbjct: 90  FAGGL-TISGGEPLMQADFVREVFYLAKHDYHLHTALDTQGFLAAHLEDEWF-------- 140

Query: 140 DLKIKGGQELKLVFPQV-NVSPENYIGFDFERFSLQPM---DGPFLEENTNLAISYCF 193
                   ++ LV   + ++ P+ Y+    +   LQP         +    + I Y  
Sbjct: 141 -------DDIDLVLLDIKHIDPDKYLALTSQP--LQPTLDFARRLSDMGKKMWIRYVL 189


>gi|228966456|ref|ZP_04127509.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228793178|gb|EEM40728.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 340

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  F+          + D++  +       G ++ R   +TG
Sbjct: 24  DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 76

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ L+K  G E I + TNG++      D        + VS
Sbjct: 77  GEPLLRRGLPKLIERLHKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 128


>gi|257791940|ref|YP_003182546.1| molybdenum cofactor biosynthesis protein A [Eggerthella lenta DSM
           2243]
 gi|257475837|gb|ACV56157.1| molybdenum cofactor biosynthesis protein A [Eggerthella lenta DSM
           2243]
          Length = 333

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 6/92 (6%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C     G+Q       ++ ++ ++ E   +      R   LTGGEPL+++ 
Sbjct: 18  DRCNFRCIYC-MPEEGVQSLAHE--DILRIEEIEEAVRVAAGMGIRSIRLTGGEPLVRLG 74

Query: 101 -VPLIQAL-NKRGFE-IAVETNGTIEPPQGID 129
            V L++A+ +  G E +++ TNG + P   +D
Sbjct: 75  VVDLVRAIAHTPGIENVSMTTNGVLLPKMAVD 106


>gi|187778214|ref|ZP_02994687.1| hypothetical protein CLOSPO_01806 [Clostridium sporogenes ATCC
           15579]
 gi|187775142|gb|EDU38944.1| hypothetical protein CLOSPO_01806 [Clostridium sporogenes ATCC
           15579]
          Length = 312

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C FC +T        K    +++    ++++     +    +   
Sbjct: 35  CNL-----------ACDFCPETKR------KAQFMSIEIFDKILDQIKPYTDYIYFHVK- 76

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             GEPLL  D+   +    K+GF++ + TNGT+
Sbjct: 77  --GEPLLHPDIDKFLDLSYKKGFKVNITTNGTL 107


>gi|163786902|ref|ZP_02181350.1| Fe-S protein, radical SAM family [Flavobacteriales bacterium ALC-1]
 gi|159878762|gb|EDP72818.1| Fe-S protein, radical SAM family [Flavobacteriales bacterium ALC-1]
          Length = 464

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 58/174 (33%), Gaps = 35/174 (20%)

Query: 31  GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G   D     C             C T + G   T G    ++++  +++   +
Sbjct: 80  GCPYDCGLCPDHEQHSCLTVLEVTDRCNLTCPTCYAGSSPTYGRHRTLEEVKTMLD-TIV 138

Query: 80  TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKA 137
             EKE     ++GGEP +      ++          + + TNG               K 
Sbjct: 139 KNEKEPDVVQISGGEPTIHPQFWDIMDYAKSLPIRHLMLNTNGI--------------KI 184

Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFD-FERFSLQPMDGPFLEENTNLAIS 190
             D   +  + LK   P      E Y+ FD FE   LQ + G  L +    A+ 
Sbjct: 185 AKDF--EFAKRLKTYAP----DFEIYLQFDSFENTVLQELRGADLNDIREQALE 232


>gi|302037561|ref|YP_003797883.1| hypothetical protein NIDE2242 [Candidatus Nitrospira defluvii]
 gi|300605625|emb|CBK41958.1| conserved protein of unknown function [Candidatus Nitrospira
           defluvii]
          Length = 355

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 47/133 (35%), Gaps = 36/133 (27%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
           + TLQ    H GR         CNL           QC  C   +         +  +D 
Sbjct: 8   YPTLQ---VHPGRR--------CNL-----------QCLHC---YSDSGPAVTEQLAIDL 42

Query: 70  LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI------ 122
           L  ++ +    G    R   ++GGEPLL   +  L++A +  G    V TNG +      
Sbjct: 43  LEQVVADAAAIGY---RVMSVSGGEPLLYPGLAQLLRAAHASGLVTTVTTNGMLLDQRQL 99

Query: 123 -EPPQGIDWICVS 134
                  D + +S
Sbjct: 100 NVLEADCDLVAIS 112


>gi|238749780|ref|ZP_04611285.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia rohdei ATCC
           43380]
 gi|238712435|gb|EEQ04648.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia rohdei ATCC
           43380]
          Length = 246

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 59/184 (32%), Gaps = 44/184 (23%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G    V++L           
Sbjct: 25  VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134
              G     +GGE +LQ +      +A +K G    ++TNG +        + +D     
Sbjct: 68  NASGGGVTASGGEAILQAEFVRDWFRACHKEGIHTCLDTNGFVRRYDPVIDELLD----- 122

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
                DL +   +++     Q  V   N+   +F R+          + N    I Y   
Sbjct: 123 ---ATDLVMLDLKQMDDSVHQNLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV 171

Query: 195 NPKW 198
            P W
Sbjct: 172 -PGW 174


>gi|225572370|ref|ZP_03781234.1| hypothetical protein RUMHYD_00664 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040137|gb|EEG50383.1| hypothetical protein RUMHYD_00664 [Blautia hydrogenotrophica DSM
           10507]
          Length = 364

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 11/86 (12%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRY----NVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           R +  CR C   +V ++  +  RY    +  +   + E+    G     +  +TGGEPL+
Sbjct: 43  RCNFDCRMC---YVHLKPEEMPRYGRELSAKEWLKVAEDARAAGTV---WLCVTGGEPLM 96

Query: 98  QVDVPLIQA-LNKRGFEIAVETNGTI 122
             +   I   L   GF I ++TN ++
Sbjct: 97  HPEFETIWRGLTGMGFFITLQTNASL 122


>gi|238784521|ref|ZP_04628529.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia bercovieri
           ATCC 43970]
 gi|238714584|gb|EEQ06588.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia bercovieri
           ATCC 43970]
          Length = 246

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 44/184 (23%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G    V++L           
Sbjct: 25  VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134
              G     +GGE +LQ +      +A ++ G    ++TNG +        + +D     
Sbjct: 68  NASGGGVTASGGEAILQAEFVRDWFRACHEEGIHTCLDTNGFVRRYDPVIDELLD----- 122

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
                DL +   +++     Q  V   N+   +F R+          + N    I Y   
Sbjct: 123 ---ATDLVMLDLKQMDDSVHQNLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV 171

Query: 195 NPKW 198
            P W
Sbjct: 172 -PGW 174


>gi|75762416|ref|ZP_00742285.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228902038|ref|ZP_04066203.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           IBL 4222]
 gi|74490091|gb|EAO53438.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228857624|gb|EEN02119.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           IBL 4222]
          Length = 340

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  F+          + D++  +       G ++ R   +TG
Sbjct: 24  DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 76

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ L+K  G E I + TNG++      D        + VS
Sbjct: 77  GEPLLRRGLPKLIERLHKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 128


>gi|326775270|ref|ZP_08234535.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Streptomyces cf. griseus XylebKG-1]
 gi|326655603|gb|EGE40449.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Streptomyces cf. griseus XylebKG-1]
          Length = 339

 Score = 44.6 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 38  CNLAC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  +++ L  R   + + TN  +   + +D    SP     + I G +E
Sbjct: 80  GGEPLMHPQIDEIVRQLVARKKYVFLCTN-AMLMRKKLDKFTPSPYFAFAVHIDGLRE 136


>gi|218289231|ref|ZP_03493466.1| molybdenum cofactor biosynthesis protein A [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240579|gb|EED07759.1| molybdenum cofactor biosynthesis protein A [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 341

 Score = 44.6 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 20/168 (11%)

Query: 41  DRLSAQCRFC-DTDFVGIQGT---KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
           DR + +C +C  +D  G            + D++A L+      G ++ R   LTGGEPL
Sbjct: 25  DRCNFRCPYCMPSDVFGPDYPFLRPDALMSPDEIAKLVRALVPLGLEKVR---LTGGEPL 81

Query: 97  LQVD-VPLIQALNKRG--FEIAVETNGTIEPPQ--------GIDWICVSPKAGCDLKIKG 145
           L+ + + +++ +       EIA+ TNG++   +        G+  I VS  A        
Sbjct: 82  LRREVIEIVEKVAAVPGLHEIAMTTNGSLLTREKAMSLKRAGLTRITVSLDALRPDVAAR 141

Query: 146 GQELKLVFPQV--NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191
              ++    +V   +   +  G    + ++    G   +E   +A  +
Sbjct: 142 MNGVRFPVHRVLSAIEAADEAGLAPVKVNVVVRRGWNEDEVVAIAERF 189


>gi|182434753|ref|YP_001822472.1| hypothetical protein SGR_960 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178463269|dbj|BAG17789.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 342

 Score = 44.6 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 41  CNLAC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 82

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  +++ L  R   + + TN  +   + +D    SP     + I G +E
Sbjct: 83  GGEPLMHPQIDEIVRQLVARKKYVFLCTN-AMLMRKKLDKFTPSPYFAFAVHIDGLRE 139


>gi|169350092|ref|ZP_02867030.1| hypothetical protein CLOSPI_00834 [Clostridium spiroforme DSM 1552]
 gi|169293305|gb|EDS75438.1| hypothetical protein CLOSPI_00834 [Clostridium spiroforme DSM 1552]
          Length = 313

 Score = 44.6 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118
               Y+++ L + I+E  +    +G     +GGEPL+Q    V +++   + G   A+ET
Sbjct: 112 DSEVYDIETLLEKIKEDEVFFRDDGG-VTFSGGEPLMQGQFLVEILKRCKEEGLHTAIET 170


>gi|194334092|ref|YP_002015952.1| radical SAM domain-containing protein [Prosthecochloris aestuarii
           DSM 271]
 gi|194311910|gb|ACF46305.1| Radical SAM domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 346

 Score = 44.6 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 20/95 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C  +     G        +Q   L+         +  +  L+
Sbjct: 17  CNL-----------SCVYCYENACRHDGAAMSLQTAEQAVGLVA-----ASGKPFHIQLS 60

Query: 92  GGEPLLQVDV--PLIQALNKRGFE--IAVETNGTI 122
           GGEPLL  D    +++ + K+G    ++++TNG +
Sbjct: 61  GGEPLLAPDTIFAVMELIRKKGIPAFVSLQTNGVL 95


>gi|170699342|ref|ZP_02890390.1| coenzyme PQQ biosynthesis protein E [Burkholderia ambifaria
           IOP40-10]
 gi|170135772|gb|EDT04052.1| coenzyme PQQ biosynthesis protein E [Burkholderia ambifaria
           IOP40-10]
          Length = 374

 Score = 44.6 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 9/91 (9%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
            LW   E   R    C FC   +  +   T G   + D    +I +    G  +      
Sbjct: 13  PLWLLAELTYRCPLHCAFC---YNPVDFATHGAELDTDAWRTVISDARALGAAQ---IGF 66

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           +GGEPL + D+  L+Q     GF   + T+G
Sbjct: 67  SGGEPLQRDDLEVLVQHARSLGFYTNLITSG 97


>gi|322369540|ref|ZP_08044105.1| molybdenum cofactor biosynthesis protein A [Haladaptatus
           paucihalophilus DX253]
 gi|320551272|gb|EFW92921.1| molybdenum cofactor biosynthesis protein A [Haladaptatus
           paucihalophilus DX253]
          Length = 324

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 23/126 (18%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR +  C +C      DT   G           D +   +E   +  E +      TGGE
Sbjct: 19  DRCNFDCVYCHNEGLGDTR--GPMEPGDDEMGTDDVVRFLE---VAREFDVGKVKFTGGE 73

Query: 95  PLLQVDVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS-----PKAGCDLK 142
           P+L+ D+  I      G E ++ TNGT  P         G+  + VS     PKA  ++ 
Sbjct: 74  PMLREDLEEIIRRTPDGMETSLTTNGTFLPGRAEELRKAGLSRVNVSQDALDPKAFAEVT 133

Query: 143 IKGGQE 148
             G  +
Sbjct: 134 KSGAYD 139


>gi|15842680|ref|NP_337717.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis CDC1551]
 gi|254233733|ref|ZP_04927058.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis C]
 gi|13882999|gb|AAK47531.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis CDC1551]
 gi|124599262|gb|EAY58366.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis C]
          Length = 368

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 28/117 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR+C  +       +    +V +++ +++     G  + R   +T
Sbjct: 46  CNL-----------RCRYCMPEEHYTWLPRQDLLSVKEISAIVDVFLSVGVSKVR---IT 91

Query: 92  GGEPLLQVDVP-LIQAL-----NKRGFE-IAVETNGTIEPP-------QGIDWICVS 134
           GGEPL++ D+P +++ L        G   +A+ TNG +           G+  I VS
Sbjct: 92  GGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITTNGVLLADRVDGLKAAGMKRITVS 148


>gi|24379898|ref|NP_721853.1| putative coenzyme PQQ synthesis protein [Streptococcus mutans
           UA159]
 gi|24377875|gb|AAN59159.1|AE014982_8 putative coenzyme PQQ synthesis protein [Streptococcus mutans
           UA159]
          Length = 371

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 13/109 (11%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L      +R +  C +C +   G   +K G  +V++L  +  E  + G        +TGG
Sbjct: 10  LVDVCVTNRCNLSCSYC-SAEAGPFASKKGEMSVEKLDSIFRELNLMGVPR---VGVTGG 65

Query: 94  EPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ--------GIDWICV 133
           EP ++ D + +++A +K  F   + TNG +             +D ICV
Sbjct: 66  EPFIRDDILDILKAFDKYHFAKVLNTNGNLITDSVAKELSKLHLDRICV 114


>gi|31794288|ref|NP_856781.1| molybdenum cofactor biosynthesis protein A [Mycobacterium bovis
           AF2122/97]
 gi|59798458|sp|Q7TX84|MOAA1_MYCBO RecName: Full=Molybdenum cofactor biosynthesis protein A 1
 gi|31619883|emb|CAD96823.1| PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A MOAA1
           [Mycobacterium bovis AF2122/97]
          Length = 359

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 28/117 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR+C  +       +    +V +++ +++     G  + R   +T
Sbjct: 37  CNL-----------RCRYCMPEEHYTWLPRQDLLSVKEISAIVDVFLSVGVSKVR---IT 82

Query: 92  GGEPLLQVDVP-LIQAL-----NKRGFE-IAVETNGTIEPP-------QGIDWICVS 134
           GGEPL++ D+P +++ L        G   +A+ TNG +           G+  I VS
Sbjct: 83  GGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITTNGVLLADRVDGLKAAGMKRITVS 139


>gi|57117055|ref|YP_177925.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis H37Rv]
 gi|121638994|ref|YP_979218.1| putative molybdenum cofactor biosynthesis protein A moaA1
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148662963|ref|YP_001284486.1| molybdenum cofactor biosynthesis protein A1 [Mycobacterium
           tuberculosis H37Ra]
 gi|148824301|ref|YP_001289055.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis F11]
 gi|224991486|ref|YP_002646175.1| putative molybdenum cofactor biosynthesis protein A [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253797790|ref|YP_003030791.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis KZN 1435]
 gi|254365737|ref|ZP_04981782.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|260202251|ref|ZP_05769742.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis T46]
 gi|260206444|ref|ZP_05773935.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis K85]
 gi|289444673|ref|ZP_06434417.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis T46]
 gi|289553099|ref|ZP_06442309.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis KZN 605]
 gi|289571317|ref|ZP_06451544.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis T17]
 gi|289575821|ref|ZP_06456048.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis K85]
 gi|289746919|ref|ZP_06506297.1| molybdenum cofactor biosynthesis protein A1 [Mycobacterium
           tuberculosis 02_1987]
 gi|289751785|ref|ZP_06511163.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis T92]
 gi|289755228|ref|ZP_06514606.1| molybdenum cofactor biosynthesis protein A1 [Mycobacterium
           tuberculosis EAS054]
 gi|289759236|ref|ZP_06518614.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis T85]
 gi|289763289|ref|ZP_06522667.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis GM 1503]
 gi|297635744|ref|ZP_06953524.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732742|ref|ZP_06961860.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis KZN R506]
 gi|306804898|ref|ZP_07441566.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu008]
 gi|306809089|ref|ZP_07445757.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu007]
 gi|313660075|ref|ZP_07816955.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis KZN V2475]
 gi|3024133|sp|O05786|MOAA1_MYCTU RecName: Full=Molybdenum cofactor biosynthesis protein A 1
 gi|38490320|emb|CAE55548.1| PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A MOAA1
           [Mycobacterium tuberculosis H37Rv]
 gi|121494642|emb|CAL73123.1| Probable molybdenum cofactor biosynthesis protein A moaA1
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|134151250|gb|EBA43295.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148507115|gb|ABQ74924.1| molybdenum cofactor biosynthesis protein A1 [Mycobacterium
           tuberculosis H37Ra]
 gi|148722828|gb|ABR07453.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis F11]
 gi|224774601|dbj|BAH27407.1| putative molybdenum cofactor biosynthesis protein A [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253319293|gb|ACT23896.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis KZN 1435]
 gi|289417592|gb|EFD14832.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis T46]
 gi|289437731|gb|EFD20224.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis KZN 605]
 gi|289540252|gb|EFD44830.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis K85]
 gi|289545071|gb|EFD48719.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis T17]
 gi|289687447|gb|EFD54935.1| molybdenum cofactor biosynthesis protein A1 [Mycobacterium
           tuberculosis 02_1987]
 gi|289692372|gb|EFD59801.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis T92]
 gi|289695815|gb|EFD63244.1| molybdenum cofactor biosynthesis protein A1 [Mycobacterium
           tuberculosis EAS054]
 gi|289710795|gb|EFD74811.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis GM 1503]
 gi|289714800|gb|EFD78812.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis T85]
 gi|308344666|gb|EFP33517.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu007]
 gi|308348616|gb|EFP37467.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu008]
 gi|323718340|gb|EGB27518.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis CDC1551A]
 gi|326902668|gb|EGE49601.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis W-148]
 gi|328457569|gb|AEB02992.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis KZN 4207]
          Length = 359

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 28/117 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR+C  +       +    +V +++ +++     G  + R   +T
Sbjct: 37  CNL-----------RCRYCMPEEHYTWLPRQDLLSVKEISAIVDVFLSVGVSKVR---IT 82

Query: 92  GGEPLLQVDVP-LIQAL-----NKRGFE-IAVETNGTIEPP-------QGIDWICVS 134
           GGEPL++ D+P +++ L        G   +A+ TNG +           G+  I VS
Sbjct: 83  GGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITTNGVLLADRVDGLKAAGMKRITVS 139


>gi|118581347|ref|YP_902597.1| radical SAM domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118504057|gb|ABL00540.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379]
          Length = 358

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 22/116 (18%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              CNL            CR C ++    QG     ++  +   L+ E     +      
Sbjct: 15  TQKCNLRC--------VHCR-CSSELDSSQGD----FSTQEGKTLLRE---IADFSKPVV 58

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143
           VL+GGEPL++ D+  L +     G  + + TNG++   +          AG D+K+
Sbjct: 59  VLSGGEPLMRPDIFELARCGTSLGLRMCMATNGSLVTKE-----TCRDMAGADIKM 109


>gi|116749463|ref|YP_846150.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698527|gb|ABK17715.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 411

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 26/116 (22%)

Query: 32  CNLWSG-----REQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           CNL        R    +  +  + D++             + +  D++++  +T  +   
Sbjct: 76  CNLKCAMCTQIRHTAEIPPELSWYDSER---------ELPLSKWIDILDQ--VTAFRPRL 124

Query: 87  YCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT-------IEPPQGIDWICVS 134
           +  +TGGEPLL      LI+   +R F   V +NGT       +    G++ + VS
Sbjct: 125 H--ITGGEPLLYPGFRELIREAKRRRFFTRVTSNGTLLAGMADLLVSLGVEVVSVS 178


>gi|298526582|ref|ZP_07013991.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|298496376|gb|EFI31670.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis 94_M4241A]
          Length = 359

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 28/117 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR+C  +       +    +V +++ +++     G  + R   +T
Sbjct: 37  CNL-----------RCRYCMPEEHYTWLPRQDLLSVKEISAIVDVFLSVGVSKVR---IT 82

Query: 92  GGEPLLQVDVP-LIQAL-----NKRGFE-IAVETNGTIEPP-------QGIDWICVS 134
           GGEPL++ D+P +++ L        G   +A+ TNG +           G+  I VS
Sbjct: 83  GGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITTNGVLLADRVDGLKAAGMKRITVS 139


>gi|290580122|ref|YP_003484514.1| putative coenzyme PQQ synthesis protein [Streptococcus mutans
           NN2025]
 gi|254997021|dbj|BAH87622.1| putative coenzyme PQQ synthesis protein [Streptococcus mutans
           NN2025]
          Length = 371

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 13/109 (11%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L      +R +  C +C +   G   +K G  +V++L  +  E  + G        +TGG
Sbjct: 10  LVDVCVTNRCNLSCSYC-SAEAGPFASKKGEMSVEKLDSIFRELNLMGVPR---VGVTGG 65

Query: 94  EPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ--------GIDWICV 133
           EP ++ D + +++A +K  F   + TNG +             +D ICV
Sbjct: 66  EPFIRDDILDILKAFDKYHFAKVLNTNGNLITDSVAKELSKLHLDRICV 114


>gi|238763316|ref|ZP_04624280.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia kristensenii
           ATCC 33638]
 gi|238698415|gb|EEP91168.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia kristensenii
           ATCC 33638]
          Length = 246

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 44/184 (23%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G    V++L           
Sbjct: 25  VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134
              G     +GGE +LQ +      +A ++ G    ++TNG +        + +D     
Sbjct: 68  NASGGGVTASGGEAILQAEFVRDWFRACHEEGIHTCLDTNGFVRRYDPVIDELLD----- 122

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
                DL +   +++     Q  V   N+   +F R+          + N    I Y   
Sbjct: 123 ---ATDLVMLDLKQMDDSVHQNLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV 171

Query: 195 NPKW 198
            P W
Sbjct: 172 -PGW 174


>gi|218898660|ref|YP_002447071.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus G9842]
 gi|218544787|gb|ACK97181.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus G9842]
          Length = 338

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  F+          + D++  +       G ++ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ L+K  G E I + TNG++      D        + VS
Sbjct: 75  GEPLLRRGLPKLIERLHKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126


>gi|153000804|ref|YP_001366485.1| radical SAM domain-containing protein [Shewanella baltica OS185]
 gi|151365422|gb|ABS08422.1| Radical SAM domain protein [Shewanella baltica OS185]
          Length = 298

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 44/121 (36%), Gaps = 17/121 (14%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCV 89
           NL +       S +C  CDT F         +   Y V+++  ++  Q            
Sbjct: 72  NLNNKPRIRWDSERCSQCDTCFAVCPKQASPKVTHYTVEEILGILHSQR----HFINGIT 127

Query: 90  LTGGEPLLQVDVPLIQALNK--------RGFEIAVETNGTIEPPQGIDWICVSPKAGCDL 141
           ++GGE  LQ  +P I AL K              ++TNG++        +     A  DL
Sbjct: 128 VSGGEASLQ--LPFIIALFKGIKATESLSHLSCMLDTNGSLSLTGWHKLLPFLDSAMVDL 185

Query: 142 K 142
           K
Sbjct: 186 K 186


>gi|91202835|emb|CAJ72474.1| similar to ribonucleoside triphosphate reductase activating protein
           NrdG [Candidatus Kuenenia stuttgartiensis]
          Length = 244

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 9/80 (11%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ--WITGEKEGRYCVLTGGEPLLQVDV-PL 103
           C +C    +     K     ++ +   +++   WI G       V++GGEP +  ++  L
Sbjct: 33  CHYCHAPHLVQTPNKLESIPLESVTKKLQQSFGWIDG------VVVSGGEPTMYKELGEL 86

Query: 104 IQALNKRGFEIAVETNGTIE 123
           ++     G  + ++TNGT  
Sbjct: 87  LKIFKDIGVLVRLDTNGTNP 106


>gi|239945644|ref|ZP_04697581.1| hypothetical protein SrosN15_31952 [Streptomyces roseosporus NRRL
           15998]
 gi|239992114|ref|ZP_04712778.1| hypothetical protein SrosN1_32754 [Streptomyces roseosporus NRRL
           11379]
 gi|291449102|ref|ZP_06588492.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291352049|gb|EFE78953.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 339

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 38  CNLAC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  +++ L  R   + + TN  +   + +D    SP     + I G +E
Sbjct: 80  GGEPLMHPQIDEIVRQLVARKKYVFLCTN-AMLMRKKLDKFTPSPYFAFAVHIDGLRE 136


>gi|308369956|ref|ZP_07419659.2| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu002]
 gi|308325958|gb|EFP14809.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu002]
          Length = 351

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 28/117 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR+C  +       +    +V +++ +++     G  + R   +T
Sbjct: 29  CNL-----------RCRYCMPEEHYTWLPRQDLLSVKEISAIVDVFLSVGVSKVR---IT 74

Query: 92  GGEPLLQVDVP-LIQAL-----NKRGFE-IAVETNGTIEPP-------QGIDWICVS 134
           GGEPL++ D+P +++ L        G   +A+ TNG +           G+  I VS
Sbjct: 75  GGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITTNGVLLADRVDGLKAAGMKRITVS 131


>gi|327480469|gb|AEA83779.1| molybdenum cofactor biosynthesis protein A [Pseudomonas stutzeri
           DSM 4166]
          Length = 331

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 30/173 (17%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F      +     +++L  + +     G K  R   +TGGEPL+
Sbjct: 23  DRCDFRCTYCMSEDMVFA----PRAQILTLEELYAVADAFISLGVKRIR---VTGGEPLV 75

Query: 98  QVDVPLIQALNKRGFEIAVE-----TNGTIEPP-------QGIDWICVSPKAGCDLKIKG 145
           +    L   L + G    +E     TNG+  P         G+  + +S      LK + 
Sbjct: 76  RKG--LTGLLARLGARNELEDLAITTNGSQLPSLAASLREAGVRRLNIS---LDSLKRER 130

Query: 146 GQEL--KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL-AISYCFQN 195
             EL  +    QV    E      F+R  L  +      ++  L  + +  + 
Sbjct: 131 FAELTRRDRLDQVLEGIEAARSAGFKRIKLNSVVQKGRNDDEILDLVEFAIER 183


>gi|302874514|ref|YP_003843147.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307690877|ref|ZP_07633323.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302577371|gb|ADL51383.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
          Length = 283

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 9/87 (10%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           +   +  D+ + +CR+C               + D + ++++E       +     +TGG
Sbjct: 6   VVDIQIIDKCNRKCRYC-----FGPRPNKDILSYDTIRNILDEM---SLNQINNLSITGG 57

Query: 94  EPLLQVDVP-LIQALNKRGFEIAVETN 119
           EPL+  D+  ++    ++ F I++ TN
Sbjct: 58  EPLMHPDIKGILSYAKEKDFNISLSTN 84


>gi|146282217|ref|YP_001172370.1| molybdenum cofactor biosynthesis protein A [Pseudomonas stutzeri
           A1501]
 gi|145570422|gb|ABP79528.1| molybdopterin biosynthetic protein A2 [Pseudomonas stutzeri A1501]
          Length = 331

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 30/173 (17%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F      +     +++L  + +     G K  R   +TGGEPL+
Sbjct: 23  DRCDFRCTYCMSEDMVFA----PRAQILTLEELYAVADAFISLGVKRIR---VTGGEPLV 75

Query: 98  QVDVPLIQALNKRGFEIAVE-----TNGTIEPP-------QGIDWICVSPKAGCDLKIKG 145
           +    L   L + G    +E     TNG+  P         G+  + +S      LK + 
Sbjct: 76  RKG--LTGLLARLGARNELEDLAITTNGSQLPSLAASLHEAGVRRLNIS---LDSLKRER 130

Query: 146 GQEL--KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL-AISYCFQN 195
             EL  +    QV    E      F+R  L  +      ++  L  + +  + 
Sbjct: 131 FAELTRRDRLDQVLEGIEAARSAGFKRIKLNSVVQKGRNDDEILDLVEFAIER 183


>gi|28379672|ref|NP_786564.1| formate acetyltransferase activating enzyme [Lactobacillus
           plantarum WCFS1]
 gi|254557826|ref|YP_003064243.1| formate acetyltransferase activating enzyme [Lactobacillus
           plantarum JDM1]
 gi|300766730|ref|ZP_07076646.1| pyruvate formate-lyase activating enzyme [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|28272512|emb|CAD65436.1| formate acetyltransferase activating enzyme [Lactobacillus
           plantarum WCFS1]
 gi|254046753|gb|ACT63546.1| formate acetyltransferase activating enzyme [Lactobacillus
           plantarum JDM1]
 gi|300495681|gb|EFK30833.1| pyruvate formate-lyase activating enzyme [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 273

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 37/130 (28%)

Query: 8   EIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F ++ G G          R      GC++           +C++C   DT     +  
Sbjct: 25  ETFGSVDGPG---------IRYVAFLQGCHM-----------RCQYCHNPDT----WKLN 60

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
            G +   D++ +   +      K G    ++GGE L+Q+D  + L +          ++T
Sbjct: 61  VGDQMTADEILEDAAKYRAFWGKTGG-ITVSGGESLVQIDFILDLFEKAKAMNISTCLDT 119

Query: 119 NG---TIEPP 125
           +G   T E P
Sbjct: 120 SGQPFTREQP 129


>gi|318606276|emb|CBY27774.1| pyruvate formate-lyase activating enzyme [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 246

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 44/184 (23%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G    V++L           
Sbjct: 25  VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134
              G     +GGE +LQ +      +A ++ G    ++TNG +        + +D     
Sbjct: 68  NASGGGVTASGGEAILQAEFVRDWFRACHEEGIHTCLDTNGFVRRYDPVIDELLD----- 122

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
                DL +   +++     Q  V   N+   +F R+          + N    I Y   
Sbjct: 123 ---ATDLVMLDLKQMDDSVHQNLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV 171

Query: 195 NPKW 198
            P W
Sbjct: 172 -PGW 174


>gi|145592144|ref|YP_001154146.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145283912|gb|ABP51494.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 372

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 22/95 (23%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F  F+GCN            +C +C    +      G   + + LA +       G +
Sbjct: 152 TIF--FAGCNF-----------RCVYCQNWDISQDPEAGAEASPEALAAIQVRLREEGAR 198

Query: 84  EGRYCVLTGGEPLLQVDVPLI----QALNKRGFEI 114
              +    GGEP    ++P I    + L +RG  +
Sbjct: 199 NINWV---GGEPT--PNIPFILESLRILARRGVNV 228


>gi|94971342|ref|YP_593390.1| GTP cyclohydrolase subunit MoaA [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553392|gb|ABF43316.1| GTP cyclohydrolase subunit MoaA [Candidatus Koribacter versatilis
           Ellin345]
          Length = 338

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 20/108 (18%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QV 99
           DR + +C +C        G  G  +   +  D +    +          LTGGEPLL + 
Sbjct: 29  DRCNYRCVYC------RSGNNGPSFAELRFQDYVRIARVFVSLGITKIRLTGGEPLLRRD 82

Query: 100 DVPLIQALNK------RGFEIAVETNGTIEPP-------QGIDWICVS 134
            + L++ L           +IA+ TNG +           G++ + VS
Sbjct: 83  LLELVRELRALKTLDGEPLDIAITTNGHLLADLAQPLKEAGLNRVTVS 130


>gi|78356319|ref|YP_387768.1| radical-activating enzyme [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218724|gb|ABB38073.1| Radical-activating enzyme [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 309

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVE 117
           T G    VD++ +++E+  +   + G    L+GGEP  Q    + L++   +R    AVE
Sbjct: 113 TYGTTRTVDEVLNVVEQDSVFYARSGGGITLSGGEPFAQPAFALALLREARRRHIHTAVE 172

Query: 118 TNG 120
           T G
Sbjct: 173 TCG 175


>gi|260188145|ref|ZP_05765619.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis CPHL_A]
 gi|289448788|ref|ZP_06438532.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289421746|gb|EFD18947.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis CPHL_A]
          Length = 359

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 28/117 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR+C  +       +    +V +++ +++     G  + R   +T
Sbjct: 37  CNL-----------RCRYCMPEEHYTWLPRQDLLSVKEISAIVDVFLSVGVSKVR---IT 82

Query: 92  GGEPLLQVDVP-LIQAL-----NKRGFE-IAVETNGTIEPP-------QGIDWICVS 134
           GGEPL++ D+P +++ L        G   +A+ TNG +           G+  I VS
Sbjct: 83  GGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITTNGVLLADRVDGLKAAGMKRITVS 139


>gi|156937281|ref|YP_001435077.1| radical SAM domain-containing protein [Ignicoccus hospitalis
           KIN4/I]
 gi|156566265|gb|ABU81670.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 515

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 18/90 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C+ C   +            +++  +++E+    G        L+
Sbjct: 158 CNL-----------RCKHC---YQRADKPLPNELTLEEKLNVVEQLDRAGVAA---VALS 200

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           GGEP +      +++ L+ R   +AV TNG
Sbjct: 201 GGEPTIHPHFWRVVKELSDRFIYVAVATNG 230


>gi|37525557|ref|NP_928901.1| pyruvate formate lyase-activating enzyme 1 [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36784985|emb|CAE13905.1| pyruvate formate-lyase 1 activating enzyme (PFL-activating enzyme)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 246

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 58/184 (31%), Gaps = 44/184 (23%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G    V++L           
Sbjct: 25  VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKDVTVEELIKEATAYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134
              G     +GGE +LQ +      +A +  G    ++TNG +        + +D     
Sbjct: 68  NASGGGVTASGGEAVLQAEFVRDWFRACHAEGIHTCLDTNGFVRRYGPVIDELMD----- 122

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
                DL +   ++L     Q  V   N+   +F R+          + N    I Y   
Sbjct: 123 ---ATDLVMLDLKQLNDEIHQKLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV 171

Query: 195 NPKW 198
            P W
Sbjct: 172 -PGW 174


>gi|257784457|ref|YP_003179674.1| pyruvate formate-lyase activating enzyme [Atopobium parvulum DSM
           20469]
 gi|257472964|gb|ACV51083.1| pyruvate formate-lyase activating enzyme [Atopobium parvulum DSM
           20469]
          Length = 260

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 36/106 (33%), Gaps = 27/106 (25%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
           E F T+ G G    R+ VF    GC +           +C +C   DT     Q   G  
Sbjct: 17  ETFGTVDGPGT---RLVVF--TQGCPM-----------RCAYCHNPDT----WQFGIGTE 56

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110
            +V ++                    TGGEPL Q     + AL + 
Sbjct: 57  TSVKEILATFNRNR--AFYRNGGITATGGEPLAQP--EFVGALFEA 98


>gi|251791924|ref|YP_003006644.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533311|gb|ACS96557.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter
           aphrophilus NJ8700]
          Length = 246

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 59/180 (32%), Gaps = 45/180 (25%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G    V++L   +     
Sbjct: 21  IRFILFLQGC-----------LMRCKYCHNRDT----WDLHGGKEVTVEELMKEVVSYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
                G     +GGE +LQ +      +A  K G    ++TNG +        + +D   
Sbjct: 66  FMNASGGGVTASGGEAILQAEFVRDWFRACKKEGISTCLDTNGFVRHYDHVIDELMDV-- 123

Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC 192
                  DL +   +EL     Q+ +   N    +F +  LQ       + N  + + Y 
Sbjct: 124 ------TDLVLLDLKELNDEVHQILIGVPNKRTLEFAK-YLQ-------KRNQRVWVRYV 169


>gi|229161145|ref|ZP_04289132.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           R309803]
 gi|228622241|gb|EEK79080.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           R309803]
          Length = 337

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 14/89 (15%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C       TD+  +Q         D++  L       G ++ R   LTGGE
Sbjct: 22  DRCNFRCTYCMPAEVFGTDYAFLQEEC--LLTFDEIERLARLFISMGVEKIR---LTGGE 76

Query: 95  PLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           PLL+ D+P LI  L K  G + I + TNG
Sbjct: 77  PLLRKDLPKLIARLAKLEGLKDIGLTTNG 105


>gi|160933483|ref|ZP_02080871.1| hypothetical protein CLOLEP_02329 [Clostridium leptum DSM 753]
 gi|156867360|gb|EDO60732.1| hypothetical protein CLOLEP_02329 [Clostridium leptum DSM 753]
          Length = 313

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 47  CRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-- 100
           C  C     + F G     G    V+++   + +        G    L+GGE   Q +  
Sbjct: 96  CTGCGACAQSCFTGALVMSGKEMAVEEVMSEVLQDRNYYRNSGGGVTLSGGEVAAQPEFA 155

Query: 101 VPLIQALNKRGFEIAVETN 119
           V L++AL       A+ETN
Sbjct: 156 VELLKALKNENISTAIETN 174


>gi|121604594|ref|YP_981923.1| molybdenum cofactor biosynthesis protein A [Polaromonas
           naphthalenivorans CJ2]
 gi|120593563|gb|ABM37002.1| GTP cyclohydrolase subunit MoaA [Polaromonas naphthalenivorans CJ2]
          Length = 376

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 27/170 (15%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D ++  +   +    + +++  L       G ++ R   LTGGE
Sbjct: 51  DRCNFRCNYCMPSEVFDKNYAFL--PQSSLLSFEEITRLATIFVAHGVEKIR---LTGGE 105

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ ++  LI+ L +      +  +I + TNG++           G+  + VS  A  D
Sbjct: 106 PLLRKNLEVLIEMLARLQTPAGKPLDITLTTNGSLLAKKARSLKDAGLQRVTVSLDALDD 165

Query: 141 LKIKGGQELKLVFPQV--NVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
              +G  ++      V   +     +G    + ++    G    E   LA
Sbjct: 166 AIFRGMNDVDFPVADVLRGIEVAQRVGLAPVKINMVVKRGTNDGEILPLA 215


>gi|329897311|ref|ZP_08272029.1| Molybdenum cofactor biosynthesis protein A [gamma proteobacterium
           IMCC3088]
 gi|328921242|gb|EGG28641.1| Molybdenum cofactor biosynthesis protein A [gamma proteobacterium
           IMCC3088]
          Length = 329

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 13/87 (14%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+     +    ++++L+++       G K+ R   LTGGEPL+
Sbjct: 19  DRCDFRCVYCMAEDMTFL----PRKEILSLEELSEIGAAFVELGGKKIR---LTGGEPLI 71

Query: 98  QVD-VPLIQALNK-RGFE-IAVETNGT 121
           + D + L+++L    G E +A+ TNG+
Sbjct: 72  RKDFIKLVESLGALAGLEQLAITTNGS 98


>gi|331092353|ref|ZP_08341179.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330401377|gb|EGG80963.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 171

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 19/88 (21%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            GC              C  C         T G   +  ++  +IE   +          
Sbjct: 25  QGCP-----------HHCHGCQNPETWSD-TDGTLVDEREVVQMIETNPLAKG-----VT 67

Query: 90  LTGGEPLLQVD--VPLIQALNKRGFEIA 115
            +GGEP  Q +    L + L  +G+E+A
Sbjct: 68  FSGGEPFAQAESFNVLAELLKDKGYEVA 95


>gi|308232336|ref|ZP_07415756.2| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu001]
 gi|308372426|ref|ZP_07428640.2| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu004]
 gi|308373630|ref|ZP_07433114.2| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu005]
 gi|308378192|ref|ZP_07481852.2| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu009]
 gi|308379413|ref|ZP_07486196.2| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu010]
 gi|308380573|ref|ZP_07490415.2| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu011]
 gi|308214306|gb|EFO73705.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu001]
 gi|308333330|gb|EFP22181.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu004]
 gi|308336984|gb|EFP25835.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu005]
 gi|308353341|gb|EFP42192.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu009]
 gi|308357175|gb|EFP46026.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu010]
 gi|308361126|gb|EFP49977.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu011]
          Length = 344

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 28/117 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR+C  +       +    +V +++ +++     G  + R   +T
Sbjct: 22  CNL-----------RCRYCMPEEHYTWLPRQDLLSVKEISAIVDVFLSVGVSKVR---IT 67

Query: 92  GGEPLLQVDVP-LIQAL-----NKRGFE-IAVETNGTIEPP-------QGIDWICVS 134
           GGEPL++ D+P +++ L        G   +A+ TNG +           G+  I VS
Sbjct: 68  GGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITTNGVLLADRVDGLKAAGMKRITVS 124


>gi|195541852|gb|ACF98054.1| putative heme D1 biosynthesis protein NirJ [uncultured bacterium
           888]
          Length = 411

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         +      DT+F        G  +  ++  ++++ + +   E R  +L+
Sbjct: 36  CNLACRHCYSISA------DTNF-------PGELSTAEVFAVLDDLYAS---EVRVLILS 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D+  +++     GF I + +NGT+
Sbjct: 80  GGEPLLRPDLFRIVRRAKSMGFYIGLSSNGTL 111


>gi|167969718|ref|ZP_02551995.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis H37Ra]
 gi|215405104|ref|ZP_03417285.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis 02_1987]
 gi|215432065|ref|ZP_03429984.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis EAS054]
 gi|218754879|ref|ZP_03533675.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis GM 1503]
 gi|219559151|ref|ZP_03538227.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis T17]
 gi|254552189|ref|ZP_05142636.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|308374774|ref|ZP_07437356.2| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu006]
 gi|308340798|gb|EFP29649.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu006]
          Length = 335

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 28/117 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR+C  +       +    +V +++ +++     G  + R   +T
Sbjct: 13  CNL-----------RCRYCMPEEHYTWLPRQDLLSVKEISAIVDVFLSVGVSKVR---IT 58

Query: 92  GGEPLLQVDVP-LIQAL-----NKRGFE-IAVETNGTIEPP-------QGIDWICVS 134
           GGEPL++ D+P +++ L        G   +A+ TNG +           G+  I VS
Sbjct: 59  GGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITTNGVLLADRVDGLKAAGMKRITVS 115


>gi|83309169|ref|YP_419433.1| Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
 gi|82944010|dbj|BAE48874.1| Predicted Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
          Length = 354

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 16/110 (14%)

Query: 38  REQDRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           +  +R +  C +C    D   +G    +G      ++ +++E+    G K       +GG
Sbjct: 34  KPTNRCNHNCWYCAYRTDDLKLGEDMDEGDSIPEAKMMEIVEDVLEMGVKA---VTFSGG 90

Query: 94  -EPLLQVDVP-LIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134
            EPLL   +P +I+ L   G ++A  TNG+           +   W+ VS
Sbjct: 91  GEPLLYKPLPNVIERLAAGGVKVATLTNGSNLRGRVGEALARHATWVRVS 140


>gi|331270311|ref|YP_004396803.1| pyruvate formate-lyase [Clostridium botulinum BKT015925]
 gi|329126861|gb|AEB76806.1| pyruvate formate-lyase [Clostridium botulinum BKT015925]
          Length = 310

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           G    V ++   ++++ +   +      L+GGEPL+Q    + L++     G+   +ET
Sbjct: 110 GEEMTVKEIIQELKKESVQFRRSNGGVTLSGGEPLMQSKFALELLKGCKSMGWHTTMET 168


>gi|308371235|ref|ZP_07424286.2| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu003]
 gi|308329484|gb|EFP18335.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu003]
          Length = 334

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 28/117 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR+C  +       +    +V +++ +++     G  + R   +T
Sbjct: 12  CNL-----------RCRYCMPEEHYTWLPRQDLLSVKEISAIVDVFLSVGVSKVR---IT 57

Query: 92  GGEPLLQVDVP-LIQAL-----NKRGFE-IAVETNGTIEPP-------QGIDWICVS 134
           GGEPL++ D+P +++ L        G   +A+ TNG +           G+  I VS
Sbjct: 58  GGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITTNGVLLADRVDGLKAAGMKRITVS 114


>gi|326317352|ref|YP_004235024.1| molybdenum cofactor biosynthesis protein A [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323374188|gb|ADX46457.1| molybdenum cofactor biosynthesis protein A [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 386

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 61/157 (38%), Gaps = 33/157 (21%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  ++    + G   + ++++ L       G ++ R   LTG
Sbjct: 55  DRCNFRCSYCMPKEVFGKDYPYL----SHGDLLSFEEISRLARVFLAHGVRKIR---LTG 107

Query: 93  GEPLLQVDVP-LIQALNKRGFE--------IAVETNGTIEP-------PQGIDWICVSPK 136
           GEPLL+  +  L++ L   G          + + TNG++           G+  + VS  
Sbjct: 108 GEPLLRRHLENLVEQL--AGLRTTEGRVPDLTLTTNGSLLARKARALRDAGLARLTVSLD 165

Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
           +  D   +   ++     +V    E      FER  +
Sbjct: 166 SLQDSVFRRMNDVDFPVAEVLSGIEAAQAAGFERIKV 202


>gi|205354307|ref|YP_002228108.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205274088|emb|CAR39096.1| pyruvate formate-lyase 2 activating enzyme (ec 1.97.1.4)
           (pfl-activating enzyme) [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326629431|gb|EGE35774.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 292

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS--------------AQCRF 49
           IF     +L  G+G       VF  F GC        +  S               +C  
Sbjct: 24  IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLRCTP 78

Query: 50  C----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
           C    D    G   + G    +D+L   + +  I     G    L+GGE L+Q       
Sbjct: 79  CLRDADECPSGAFESIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 138

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L + G   A+ET G
Sbjct: 139 LQRLRRWGVPCAIETAG 155


>gi|94985862|ref|YP_605226.1| molybdenum cofactor biosynthesis protein A [Deinococcus
           geothermalis DSM 11300]
 gi|94556143|gb|ABF46057.1| Molybdenum cofactor biosynthesis protein A [Deinococcus
           geothermalis DSM 11300]
          Length = 333

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  +  T       +++  L       G ++ R   LTG
Sbjct: 19  DRCNLRCTYCMPAEVFGPD--YAFLPRT--ELLTFEEIERLARAFVDLGVRKLR---LTG 71

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+ D+P L+  L +  G E IA+ TNG + P    D        + VS
Sbjct: 72  GEPLLRRDLPELVARLGRIAGVEDIALTTNGLLLPRLAADLQRAGLKRVTVS 123


>gi|313675791|ref|YP_004053787.1| radical sam domain protein [Marivirga tractuosa DSM 4126]
 gi|312942489|gb|ADR21679.1| Radical SAM domain protein [Marivirga tractuosa DSM 4126]
          Length = 326

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 14/98 (14%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CN +      R +A C FCD   +  + +    + +V Q    ++   +      +    
Sbjct: 10  CNYYVTY---RCNASCHFCD---IWEKPSPYINKADVKQNLKDLKRLGV------KVIDF 57

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127
           TGGEPLL  ++   +    + GF   + TNG + P + 
Sbjct: 58  TGGEPLLHNEIHDFLMMAKEIGFITTLTTNGLLYPKKA 95


>gi|212704755|ref|ZP_03312883.1| hypothetical protein DESPIG_02819 [Desulfovibrio piger ATCC 29098]
 gi|212671818|gb|EEB32301.1| hypothetical protein DESPIG_02819 [Desulfovibrio piger ATCC 29098]
          Length = 399

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 13/107 (12%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           G  A       C L +       +  C+ C            G ++ ++   LI+     
Sbjct: 48  GTPA-------CKLIAWEVTRSCNLACKHC--RAEAHPEPYPGEFSTEEAKALIDTFPQV 98

Query: 81  GEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           G       + TGG+P+++ DV  L+   + +G   A   NGT+  P+
Sbjct: 99  G---NPIIIFTGGDPMMRPDVYELVAYAHNKGLTCAFSPNGTLITPE 142


>gi|251798581|ref|YP_003013312.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp.
           JDR-2]
 gi|247546207|gb|ACT03226.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp.
           JDR-2]
          Length = 333

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C     G++        + D + ++++     G  + R   +TGGEPL++ 
Sbjct: 21  DRCNLRCLYC-MPEEGMEFADASHLLSYDHIVEVVQTAAELGITKLR---ITGGEPLIRP 76

Query: 100 DVP-LIQALNK-RGFE-IAVETNG 120
           D+  LI+ L    G E IA+ TNG
Sbjct: 77  DLDSLIRRLKAIPGIEDIALTTNG 100


>gi|120611327|ref|YP_971005.1| molybdenum cofactor biosynthesis protein A [Acidovorax citrulli
           AAC00-1]
 gi|120589791|gb|ABM33231.1| GTP cyclohydrolase subunit MoaA [Acidovorax citrulli AAC00-1]
          Length = 386

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 55/150 (36%), Gaps = 19/150 (12%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C    V  +      + ++    ++     +      R   LTGGEPLL+ 
Sbjct: 55  DRCNFRCSYCMPKEVFGKDYPYLSHGDLLSFEEITRLARVFLAHGVRKIRLTGGEPLLRR 114

Query: 100 DVP-LIQALNKRGFEIA--------VETNGTIEP-------PQGIDWICVSPKAGCDLKI 143
            +  L++ L   G   A        + TNG++           G+  + VS  +  D   
Sbjct: 115 HLENLVEQL--AGLRTAEGRVPDLTLTTNGSLLARKARALRDAGLARLTVSLDSLQDSVF 172

Query: 144 KGGQELKLVFPQVNVSPENYIGFDFERFSL 173
           +   ++     +V    E      FER  +
Sbjct: 173 RRMNDVDFPVAEVLSGIEAAQAAGFERIKV 202


>gi|18976674|ref|NP_578031.1| co-factor modifying protein [Pyrococcus furiosus DSM 3638]
 gi|18892249|gb|AAL80426.1| co-factor modifying protein [Pyrococcus furiosus DSM 3638]
          Length = 284

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 18/120 (15%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DT----DFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           F GCN        R   +   C    T    D++  +  K     V+++  ++E++ +  
Sbjct: 64  FDGCNWRCKYCVWREVTRWSLCLPEKTRQQLDYLWKE-RKVRYLTVEEVERILEKERVKI 122

Query: 82  EKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDW---ICVSPKA 137
              G      GGEP L  ++ PL++AL KRG ++ + TNG     + +D    I  S KA
Sbjct: 123 AFLG------GGEPTLDPELKPLMKALAKRGIKVWLVTNGEGLDDEIVDIAYGITFSIKA 176


>gi|302343931|ref|YP_003808460.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075]
 gi|301640544|gb|ADK85866.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075]
          Length = 337

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LI 104
            C FC  ++           +  ++A                  ++GGEPLL  ++  L 
Sbjct: 27  ACIFCYDNYRVKGSRPAA--SAQEIAADAARMAARMGVGA--VAVSGGEPLLYAELEQLT 82

Query: 105 QALNKRGFEIAVETNG 120
           + L   G  + V TNG
Sbjct: 83  RLLKAAGLFVCVMTNG 98


>gi|288932367|ref|YP_003436427.1| radical SAM protein [Ferroglobus placidus DSM 10642]
 gi|288894615|gb|ADC66152.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642]
          Length = 506

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L +    +R +  C +C   F   +        ++Q+  ++               LTGG
Sbjct: 92  LLNIVLTNRCNIACWYC--FFYAKKAGYVYEPTIEQIRHMVRVAKNLKPVGCNAVQLTGG 149

Query: 94  EPLLQVDV-PLIQALNKRGF-EIAVETNG 120
           EP L+ D+  +++A+ + G   + + TNG
Sbjct: 150 EPTLRDDLVEIVKAIKEEGIDHVQLNTNG 178


>gi|308181906|ref|YP_003926034.1| formate acetyltransferase activating enzyme [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308047397|gb|ADN99940.1| formate acetyltransferase activating enzyme [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 273

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 37/130 (28%)

Query: 8   EIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F ++ G G          R      GC++           +C++C   DT     +  
Sbjct: 25  ETFGSVDGPG---------IRYVAFLQGCHM-----------RCQYCHNPDT----WKLN 60

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
            G +   D++ +   +      K G    ++GGE L+Q+D  + L +          ++T
Sbjct: 61  VGDQMTADEILEDAAKYRAFWGKTGG-ITVSGGESLVQIDFILDLFEKAKAMNISTCLDT 119

Query: 119 NG---TIEPP 125
           +G   T E P
Sbjct: 120 SGQPFTREQP 129


>gi|296272134|ref|YP_003654765.1| molybdenum cofactor biosynthesis protein A [Arcobacter nitrofigilis
           DSM 7299]
 gi|296096309|gb|ADG92259.1| molybdenum cofactor biosynthesis protein A [Arcobacter nitrofigilis
           DSM 7299]
          Length = 320

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 69/170 (40%), Gaps = 24/170 (14%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           +R + +C++C  +  F  +        + ++L + I+     G K+ R   +TGGEPLL+
Sbjct: 19  ERCNFRCQYCMPEKPFSWVPKE--ELLSYEELFEFIKVCIDGGVKKVR---ITGGEPLLR 73

Query: 99  VDVP-LIQALNK--RGFEIAVETNGTIEP-------PQGIDWICV---SPKAGCDLKIKG 145
             +   I+ +++     ++A+ TNG + P         G+  + +   S K     K+  
Sbjct: 74  DGLDNFIRMISEYKNDIDLALTTNGYLLPKVAQKLADAGLKRLNISLDSLKPEVAQKVAQ 133

Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
              LK V   +  + +  +          PM G    E  +  I +C   
Sbjct: 134 KDILKTVLKGIEAADKAGLKIKINTV---PMQGINDSELCD-IIEFCKTR 179


>gi|23097891|ref|NP_691357.1| hypothetical protein OB0436 [Oceanobacillus iheyensis HTE831]
 gi|22776115|dbj|BAC12392.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 376

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 56/162 (34%), Gaps = 32/162 (19%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99
           +C  C   +   Q       + D L   + E+ +      R   +TGGEP++      Q 
Sbjct: 45  RCAHCAVGYTLQQ------MDPDALPMELIEKRLDEIPHLRTLSITGGEPMMNKKSVRQY 98

Query: 100 DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
            +PL++  ++RG +  + +N T+            P    +  +     L +      V 
Sbjct: 99  VLPLLKYAHERGIKTQMNSNLTL------------PYNRYEEIVPYLDVLHISHNWGTVE 146

Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLS 201
                GF         MD    EEN         +N + RLS
Sbjct: 147 EFAETGFAL-------MDRKPSEENRAKYFDRMVENAQ-RLS 180


>gi|238927735|ref|ZP_04659495.1| radical SAM domain protein [Selenomonas flueggei ATCC 43531]
 gi|238884451|gb|EEQ48089.1| radical SAM domain protein [Selenomonas flueggei ATCC 43531]
          Length = 396

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +CR C   ++   G T  G    ++    I++     E      + 
Sbjct: 47  CNL-----------RCRHC---YMESDGQTYDGELTTEEAKRFIDDL---AEFRVPVLLF 89

Query: 91  TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           +GGEPL++ D   L +   KRG    + TNGT+
Sbjct: 90  SGGEPLIRPDFFELAEHAAKRGVRPTLSTNGTL 122


>gi|222110904|ref|YP_002553168.1| radical sam domain-containing protein [Acidovorax ebreus TPSY]
 gi|221730348|gb|ACM33168.1| Radical SAM domain protein [Acidovorax ebreus TPSY]
          Length = 406

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            +       R +  C+ C   +         G  ++ ++  ++++    G       +L+
Sbjct: 31  PVVIWNLIRRCNLTCKHC---YALSADHDYAGELSLQEVYTVMDDLKAFGVPA---LILS 84

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGT-IEPP-------QGIDWICVS 134
           GGEPLL+ D+  +       GF   + TNGT I+ P        G D++ +S
Sbjct: 85  GGEPLLRPDLFEIAARARDLGFYTGLSTNGTLIDAPMAARIAGAGFDYVGIS 136


>gi|121594266|ref|YP_986162.1| radical SAM domain-containing protein [Acidovorax sp. JS42]
 gi|120606346|gb|ABM42086.1| Radical SAM domain protein [Acidovorax sp. JS42]
          Length = 406

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            +       R +  C+ C   +         G  ++ ++  ++++    G       +L+
Sbjct: 31  PVVIWNLIRRCNLTCKHC---YALSADHDYAGELSLQEVYTVMDDLKAFGVPA---LILS 84

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGT-IEPP-------QGIDWICVS 134
           GGEPLL+ D+  +       GF   + TNGT I+ P        G D++ +S
Sbjct: 85  GGEPLLRPDLFEIAARARDLGFYTGLSTNGTLIDAPMAARIAGAGFDYVGIS 136


>gi|51595746|ref|YP_069937.1| pyruvate formate lyase-activating enzyme 1 [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806669|ref|YP_650585.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis
           Antiqua]
 gi|108812757|ref|YP_648524.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis
           Nepal516]
 gi|145599586|ref|YP_001163662.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis
           Pestoides F]
 gi|149366638|ref|ZP_01888672.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
           CA88-4125]
 gi|153946839|ref|YP_001401556.1| pyruvate formate lyase-activating enzyme 1 [Yersinia
           pseudotuberculosis IP 31758]
 gi|161484775|ref|NP_670093.2| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis KIM 10]
 gi|161511413|ref|NP_992578.2| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis biovar
           Microtus str. 91001]
 gi|162421299|ref|YP_001606121.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis Angola]
 gi|165924437|ref|ZP_02220269.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939007|ref|ZP_02227560.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009871|ref|ZP_02230769.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166211440|ref|ZP_02237475.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167400062|ref|ZP_02305580.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419547|ref|ZP_02311300.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424126|ref|ZP_02315879.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470141|ref|ZP_02334845.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis FV-1]
 gi|218928529|ref|YP_002346404.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis CO92]
 gi|229841350|ref|ZP_04461509.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843455|ref|ZP_04463601.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903166|ref|ZP_04518279.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis
           Nepal516]
 gi|270486961|ref|ZP_06204035.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis KIM
           D27]
 gi|294503371|ref|YP_003567433.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
           Z176003]
 gi|51589028|emb|CAH20646.1| pyruvate formate-lyase 1 activating enzyme [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776405|gb|ABG18924.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
           Nepal516]
 gi|108778582|gb|ABG12640.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
           Antiqua]
 gi|115347140|emb|CAL20033.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis CO92]
 gi|145211282|gb|ABP40689.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
           Pestoides F]
 gi|149291012|gb|EDM41087.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
           CA88-4125]
 gi|152958334|gb|ABS45795.1| pyruvate formate-lyase 1-activating enzyme [Yersinia
           pseudotuberculosis IP 31758]
 gi|162354114|gb|ABX88062.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis Angola]
 gi|165913154|gb|EDR31778.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923497|gb|EDR40629.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991267|gb|EDR43568.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207211|gb|EDR51691.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962288|gb|EDR58309.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050770|gb|EDR62178.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056975|gb|EDR66738.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229678936|gb|EEO75039.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis
           Nepal516]
 gi|229689802|gb|EEO81863.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697716|gb|EEO87763.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|262361411|gb|ACY58132.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
           D106004]
 gi|262365052|gb|ACY61609.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
           D182038]
 gi|270335465|gb|EFA46242.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis KIM
           D27]
 gi|294353830|gb|ADE64171.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
           Z176003]
 gi|320015759|gb|ADV99330.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 244

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 59/184 (32%), Gaps = 44/184 (23%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G    V++L           
Sbjct: 23  VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFM 65

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134
              G     +GGE +LQ +      +A +K G    ++TNG +        + +D     
Sbjct: 66  NASGGGVTASGGEAILQAEFVRDWFRACHKEGIHTCLDTNGFVRRYDPVIDELLD----- 120

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
                DL +   +++     Q  V   N+   +F R+          + N    I Y   
Sbjct: 121 ---ATDLVMLDLKQMDDSIHQNLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV 169

Query: 195 NPKW 198
            P W
Sbjct: 170 -PGW 172


>gi|170024904|ref|YP_001721409.1| pyruvate formate lyase-activating enzyme 1 [Yersinia
           pseudotuberculosis YPIII]
 gi|186894824|ref|YP_001871936.1| pyruvate formate lyase-activating enzyme 1 [Yersinia
           pseudotuberculosis PB1/+]
 gi|21959685|gb|AAM86344.1|AE013882_5 pyruvate formate lyase activating enzyme 1 [Yersinia pestis KIM 10]
 gi|45435898|gb|AAS61455.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar
           Microtus str. 91001]
 gi|169751438|gb|ACA68956.1| pyruvate formate-lyase activating enzyme [Yersinia
           pseudotuberculosis YPIII]
 gi|186697850|gb|ACC88479.1| pyruvate formate-lyase activating enzyme [Yersinia
           pseudotuberculosis PB1/+]
          Length = 265

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 59/184 (32%), Gaps = 44/184 (23%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G    V++L           
Sbjct: 44  VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFM 86

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134
              G     +GGE +LQ +      +A +K G    ++TNG +        + +D     
Sbjct: 87  NASGGGVTASGGEAILQAEFVRDWFRACHKEGIHTCLDTNGFVRRYDPVIDELLD----- 141

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
                DL +   +++     Q  V   N+   +F R+          + N    I Y   
Sbjct: 142 ---ATDLVMLDLKQMDDSIHQNLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV 190

Query: 195 NPKW 198
            P W
Sbjct: 191 -PGW 193


>gi|56475902|ref|YP_157491.1| heme D1 biosynthesis protein NIRJ [Aromatoleum aromaticum EbN1]
 gi|56311945|emb|CAI06590.1| Heme D1 biosynthesis protein NIRJ [Aromatoleum aromaticum EbN1]
          Length = 401

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 17/101 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         +      DTDF        G  +  ++  ++++            +L+
Sbjct: 36  CNLTCKHCYSISA------DTDF-------PGELSTAEVFGVMDDLKA---FSVPVLILS 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           GGEPLL+ D+  + +   K GF + + +NGT+     ID I
Sbjct: 80  GGEPLLRPDIFEIGRHAKKMGFYVGLSSNGTLIGESNIDRI 120


>gi|116749748|ref|YP_846435.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698812|gb|ABK18000.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 360

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL  G                       +    + D+   L ++      +E      T
Sbjct: 22  CNLRCGHCGAAAGI--------------PRQRELSTDEALALCDQLPHLLVQE---VDFT 64

Query: 92  GGEPLLQVDVPLI-QALNKRGFEIAVETNGTI 122
           GGEPLL+ D PL+ + L  +   + V TNGT+
Sbjct: 65  GGEPLLRPDWPLLAKRLRDQDITVRVVTNGTL 96


>gi|308186250|ref|YP_003930381.1| pyruvate formate lyase activating enzyme 1 [Pantoea vagans C9-1]
 gi|308056760|gb|ADO08932.1| pyruvate formate lyase activating enzyme 1 [Pantoea vagans C9-1]
          Length = 246

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 50/153 (32%), Gaps = 28/153 (18%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G   +V+ L   +          G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEISVEALMADVLSYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKAGCDL 141
                +GGE +LQ +      +A    G    ++TNG        ID  + V+     DL
Sbjct: 72  GGVTASGGEAILQAEFVRDWFRACKAEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMIDL 131

Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
           K            Q+ V   N+   DF R  LQ
Sbjct: 132 KQMNDD-----VHQILVGVSNHRTLDFAR-YLQ 158


>gi|304390340|ref|ZP_07372293.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304326096|gb|EFL93341.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 266

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 47/150 (31%), Gaps = 37/150 (24%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
             +VF    GC              C +C  +   I       Y    L +L+  +    
Sbjct: 35  VASVF--LQGCP-----------WNCGYC-QNVAIIDPRAPAGYQEADLWELLGRRRGLL 80

Query: 82  EKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICV 133
           +      V +GGEP  Q   +P  Q     GF + + T G              +DW+ +
Sbjct: 81  DG----VVFSGGEPTRQAALMPAAQRARDLGFLLGLHTGGAYPKRLEQLLNAGLLDWVGL 136

Query: 134 SPKAGCDLKIKGGQELKLVFPQVNVSPENY 163
             K            L   +PQV   P+ +
Sbjct: 137 DVKG-----------LAQNYPQVVGRPQAH 155


>gi|298674076|ref|YP_003725826.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanohalobium evestigatum Z-7303]
 gi|298287064|gb|ADI73030.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanohalobium evestigatum Z-7303]
          Length = 251

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           F GC             +C +C         T     ++ ++   I +  I  +      
Sbjct: 26  FRGCPF-----------RCPYC---HNYELLTGSNFVDISEIESQINKSKIFVDN----V 67

Query: 89  VLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE 123
           V TGGEP +Q D    L+    +    + + TNG   
Sbjct: 68  VFTGGEPFMQPDALKHLVGFAKQNNLLVGINTNGFYP 104


>gi|110668841|ref|YP_658652.1| molybdenum cofactor biosynthesis protein A [Haloquadratum walsbyi
           DSM 16790]
 gi|121692152|sp|Q18G49|MOAA_HALWD RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|109626588|emb|CAJ53052.1| molybdenum cofactor biosynthesis protein A [Haloquadratum walsbyi
           DSM 16790]
          Length = 323

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 76/198 (38%), Gaps = 35/198 (17%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR +  C +C      DT   G    +    + D +   +E   +  + +      TGGE
Sbjct: 19  DRCNFDCVYCHNEGLGDTR--GPMDPQDDEMSTDDVVRFLE---VVSQFDIGKVKFTGGE 73

Query: 95  PLLQVDVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS-----PKAGCDLK 142
           P+L+ D+  I        E+++ TNGT  P         G++ + VS     P    ++ 
Sbjct: 74  PMLRDDLTEIIRRTPSSMEVSMTTNGTFLPGRAGALREAGLERVNVSQDALDPDEFAEIT 133

Query: 143 IKGGQE--LKLVFPQVNVSPE----NYIGFDFERFSLQPMDGPFLEEN-TNLA-ISYCFQ 194
             G  +  L+ V   V+        N + F+     ++ M     E     L  I Y  +
Sbjct: 134 KSGAYDRVLEGVEAAVDAGLAPVKLNMVVFEHTAEYVEDMVNHVSENAGLQLQLIEYMPE 193

Query: 195 ---NPKWRLSVQ-THKFI 208
              +P+W + +Q  H ++
Sbjct: 194 LTGHPEWNIDIQRVHDWL 211


>gi|328543729|ref|YP_004303838.1| Metallo cofactor biosynthesis protein, conjectural [Polymorphum
           gilvum SL003B-26A1]
 gi|326413473|gb|ADZ70536.1| Metallo cofactor biosynthesis protein, conjectural [Polymorphum
           gilvum SL003B-26A1]
          Length = 348

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 8/84 (9%)

Query: 40  QDRLSAQCRFCDTDFVGIQGTKGGRYNVD-QLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
             R + +CR C     GI+     R  +  +LA  + +Q    +        TGGEPLL 
Sbjct: 17  SHRCNIECRHC-----GIESGPRNRARMTLELARDVIQQAAELDPPATTIAFTGGEPLLY 71

Query: 99  VD--VPLIQALNKRGFEIAVETNG 120
                 L+   +  G    + TNG
Sbjct: 72  PRETEALLDLAHGLGLSTRIVTNG 95


>gi|18977019|ref|NP_578376.1| heme biosynthesis protein [Pyrococcus furiosus DSM 3638]
 gi|18892652|gb|AAL80771.1| heme biosynthesis protein [Pyrococcus furiosus DSM 3638]
          Length = 548

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 25/152 (16%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104
           +C+ C   +            +++   L+++    G        L+GGEP +    + ++
Sbjct: 158 RCKHC---YQRADRPLSSELTLEEKLMLVDQLDKAGVAA---VALSGGEPTIHPHFLRIV 211

Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENY 163
           + L+ RG   +V TNG         W+  + K   +  IK G  LK V   V+   PE +
Sbjct: 212 KELSSRGIHTSVATNG---------WV-FADKEKLEEAIKAG--LKYVEVSVDSAKPEKH 259

Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
             F        P       +    A+     +
Sbjct: 260 DEFRG-----IPGAWERAVKALENAVELGISH 286


>gi|186685355|ref|YP_001868551.1| radical SAM domain-containing protein [Nostoc punctiforme PCC
           73102]
 gi|186467807|gb|ACC83608.1| Radical SAM domain protein [Nostoc punctiforme PCC 73102]
          Length = 339

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
                 + GGEPLL   +  ++Q L +R   I + TNG +   + +D    SP     + 
Sbjct: 72  GAPVVSIPGGEPLLHPQIDEIVQGLIERKKYIYLCTNG-LLLEKSLDKFQPSPYLTFSVH 130

Query: 143 IKGGQEL 149
           + G +EL
Sbjct: 131 LDGMREL 137


>gi|325113309|ref|YP_004277254.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Acidiphilium multivorum AIU301]
 gi|325052846|dbj|BAJ83181.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Acidiphilium multivorum AIU301]
          Length = 235

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 44/141 (31%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           GR+A   F R  GC L           +CR+C          + G + +  L  L     
Sbjct: 22  GRLAATFFLR--GCPL-----------RCRYC---HNADLQARRGTFPLRWLEALTWLDQ 65

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPK- 136
             G  +    V +GGEP +   +  +I+ +   GFE+A+ T G            VSPK 
Sbjct: 66  RRGLLDS--VVFSGGEPTMDRCLEQMIRDVRSLGFEVALHTAG------------VSPKR 111

Query: 137 ----------AGCDLKIKGGQ 147
                      G D+K   G 
Sbjct: 112 LGRVLPLLQWVGLDIKAPFGD 132


>gi|71908874|ref|YP_286461.1| radical SAM family protein [Dechloromonas aromatica RCB]
 gi|71848495|gb|AAZ47991.1| Radical SAM [Dechloromonas aromatica RCB]
          Length = 379

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         +      DT+F        G  + +Q+  ++++       +    +L+
Sbjct: 36  CNLTCKHCYSISA------DTNF-------PGELSTEQVFTVMDDLK---GFKVPVLILS 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D+  + +    +GF + + +NGT+
Sbjct: 80  GGEPLLRPDIYDIAKRAKAKGFYVGLSSNGTL 111


>gi|323141180|ref|ZP_08076081.1| molybdenum cofactor biosynthesis protein A [Phascolarctobacterium
           sp. YIT 12067]
 gi|322414323|gb|EFY05141.1| molybdenum cofactor biosynthesis protein A [Phascolarctobacterium
           sp. YIT 12067]
          Length = 318

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 14/104 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR +  CR+C    V    T       ++L  +       G ++ +   +TGGEPLL+  
Sbjct: 18  DRCNLHCRYC-QPEVSEHVTHNEILRYEELLRICRAALQLGIRKFK---ITGGEPLLRKG 73

Query: 101 V-PLIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134
               I  L +  G E + + TNGT+           G+D I VS
Sbjct: 74  CSDFIANLKQLEGAEQVTLTTNGTLLSNQLPALIAAGVDSINVS 117


>gi|114567375|ref|YP_754529.1| molybdenum cofactor biosynthesis protein A [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|122317679|sp|Q0AVU6|MOAA_SYNWW RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|114338310|gb|ABI69158.1| GTP cyclohydrolase subunit MoaA [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 326

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +CR+C     G+       Y++  L ++     I  E   +   LTG
Sbjct: 10  NYMRISLTDRCNLRCRYC-MPETGVDNLTH--YSILSLEEMARLVRIASELGIQKIRLTG 66

Query: 93  GEPLLQVDVP-LIQALNKRGF--EIAVETNGTI 122
           GEPL++ +VP LI  + +     +IA+ TNGT+
Sbjct: 67  GEPLVRRNVPQLISYIAQIPRIDDIALTTNGTL 99


>gi|194334917|ref|YP_002016777.1| molybdenum cofactor biosynthesis protein A [Prosthecochloris
           aestuarii DSM 271]
 gi|194312735|gb|ACF47130.1| molybdenum cofactor biosynthesis protein A [Prosthecochloris
           aestuarii DSM 271]
          Length = 336

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 27/121 (22%)

Query: 27  CRFSG---CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            R +    CNL           +C +C  +   +   +G   + D++  ++      G  
Sbjct: 26  VRLAVTSQCNL-----------RCMYCMREEHTVYNPEGEALSGDEIVSMLAVLARMGVS 74

Query: 84  EGRYCVLTGGEPLL-QVDVPLIQALNK-RGFE-IAVETNG-------TIEPPQGIDWICV 133
           + RY   TGGEPLL Q  V L++      G E +++ TNG             GID I  
Sbjct: 75  KVRY---TGGEPLLRQDIVRLVRDAKALEGIETVSLTTNGLLLDRYLDDLVAAGIDAINF 131

Query: 134 S 134
           S
Sbjct: 132 S 132


>gi|261414525|ref|YP_003248208.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261370981|gb|ACX73726.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327031|gb|ADL26232.1| radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 358

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 15/90 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C +D V        R +  ++ D +       +      V+T
Sbjct: 38  CNL-----------HCLHCGSDCVADAIPDMPREDFMRVLDGVS---PHVDPSNFIVVIT 83

Query: 92  GGEPLLQVDVPLI-QALNKRGFEIAVETNG 120
           GGEPL++ D+  I + +  RG+   + TNG
Sbjct: 84  GGEPLMRADLEEIGKDIKARGYPWGMVTNG 113


>gi|187735294|ref|YP_001877406.1| Radical SAM domain protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187425346|gb|ACD04625.1| Radical SAM domain protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 415

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 17/97 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         SA+       F G          +D LAD           +    + +
Sbjct: 57  CNLKCVHCYADASAR------KFKGELDWDQCCAVIDDLAD----------YKVNALLFS 100

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQG 127
           GGEPL+    + L++    +G ++ + TNGT   P+ 
Sbjct: 101 GGEPLVHPRFMELLERATGKGLKVTISTNGTRITPEA 137


>gi|269104749|ref|ZP_06157445.1| putative pyruvate formate-lyase 3 activating enzyme [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268161389|gb|EEZ39886.1| putative pyruvate formate-lyase 3 activating enzyme [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 313

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           G     D L D++ +     ++       +GGEPL+Q D+   L Q L+      A+E+ 
Sbjct: 114 GEEAKSDMLFDILMKDKAFYDQSQGGVTFSGGEPLMQADLVAELAQRLHDNQVSTAIESC 173

Query: 120 GTIEP 124
             +  
Sbjct: 174 MHVPW 178


>gi|172065179|ref|YP_001815891.1| coenzyme PQQ biosynthesis protein E [Burkholderia ambifaria MC40-6]
 gi|171997421|gb|ACB68338.1| coenzyme PQQ biosynthesis protein E [Burkholderia ambifaria MC40-6]
          Length = 374

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 9/91 (9%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
            LW   E   R    C FC   +  +   T G   + D    +I +    G  +      
Sbjct: 13  PLWLLAELTYRCPLHCAFC---YNPVDFATHGTELDTDAWRTVISDARALGAAQ---IGF 66

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           +GGEPL + D+  L+Q     GF   + T+G
Sbjct: 67  SGGEPLQRDDLEVLVQHARSLGFYTNLITSG 97


>gi|16950513|dbj|BAB72009.1| quinohemoprotein amine dehydrogenase unknown subunit. [Pseudomonas
           putida]
          Length = 476

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 41/135 (30%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GCNL            C +C   D D    + + G + +       +E        E R
Sbjct: 110 TGCNL-----------SCTYCYKEDLD----KPSAGKKMSTATAEASVEMLLKESPDEQR 154

Query: 87  Y-CVLTGGEPLLQVDVPLIQ--------ALNKRGFEIA--VETNGTIEPPQGIDW----- 130
           Y  V  GGEPL   + PLI+           + G ++   + TN T+   + +DW     
Sbjct: 155 YSVVFFGGEPL--SNRPLIEHMVAYCERRFAEAGKQVEFIMTTNATLLTEEIVDWLNAHR 212

Query: 131 --ICVS---PKAGCD 140
             + VS   PK   D
Sbjct: 213 FGLSVSIDGPKTVHD 227


>gi|330815962|ref|YP_004359667.1| Molybdenum cofactor biosynthesis protein A [Burkholderia gladioli
           BSR3]
 gi|327368355|gb|AEA59711.1| Molybdenum cofactor biosynthesis protein A [Burkholderia gladioli
           BSR3]
          Length = 370

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 25/114 (21%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +  +     ++++L          G ++ R   +TGGE
Sbjct: 45  DRCNFRCVYCMPREVFDKDYPFLPHS--ALLSLEELERTARIFVAHGVEKIR---ITGGE 99

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           PLL+ ++  LI+ L +      R  ++ + TNG++           G+  + VS
Sbjct: 100 PLLRKNLEFLIERLARMETVDGRPLDLTLTTNGSLLARKARSLRDAGLTRVTVS 153


>gi|304397064|ref|ZP_07378943.1| pyruvate formate-lyase activating enzyme [Pantoea sp. aB]
 gi|304355213|gb|EFM19581.1| pyruvate formate-lyase activating enzyme [Pantoea sp. aB]
          Length = 246

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 50/153 (32%), Gaps = 28/153 (18%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G   +V+ L   +          G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEISVEALMADVLSYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKAGCDL 141
                +GGE +LQ +      +A    G    ++TNG        ID  + V+     DL
Sbjct: 72  GGVTASGGEAILQAEFVRDWFRACKAEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDL 131

Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
           K            Q+ V   N+   DF R  LQ
Sbjct: 132 KQMNDD-----VHQILVGVSNHRTLDFAR-YLQ 158


>gi|300722527|ref|YP_003711817.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus nematophila
           ATCC 19061]
 gi|297629034|emb|CBJ89619.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus nematophila
           ATCC 19061]
          Length = 246

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 57/184 (30%), Gaps = 44/184 (23%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G    V++L           
Sbjct: 25  VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKTVTVEELVKEATTYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134
              G     +GGE +LQ +      +A +  G    ++TNG +        + +D     
Sbjct: 68  NASGGGVTASGGEAILQAEFVRDWFRACHAEGINTCLDTNGFVRRYDSIIDELLD----- 122

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
                DL +   ++L     Q  V   N+   +F  +          + N    I Y   
Sbjct: 123 ---NTDLVMLDLKQLNDDIHQKLVGVSNHRTLEFAHY--------LAKRNQRTWIRYVVV 171

Query: 195 NPKW 198
            P W
Sbjct: 172 -PDW 174


>gi|292670087|ref|ZP_06603513.1| nitrite reductase heme biosynthesis J protein [Selenomonas noxia
           ATCC 43541]
 gi|292648275|gb|EFF66247.1| nitrite reductase heme biosynthesis J protein [Selenomonas noxia
           ATCC 43541]
          Length = 396

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +CR C   ++   G K  G    ++    I+      E      + 
Sbjct: 47  CNL-----------RCRHC---YMCSDGQKYDGELTTEEAKRFID---GLAEFRVPVLLF 89

Query: 91  TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           +GGEPL++ D   L +    RG    + TNGT+
Sbjct: 90  SGGEPLIRPDFFELAEYARDRGVRPTLSTNGTL 122


>gi|257440313|ref|ZP_05616068.1| pyruvate formate-lyase 1-activating enzyme [Faecalibacterium
           prausnitzii A2-165]
 gi|257197347|gb|EEU95631.1| pyruvate formate-lyase 1-activating enzyme [Faecalibacterium
           prausnitzii A2-165]
          Length = 251

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 28/119 (23%)

Query: 8   EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
           E F ++ G G        VF    GC           + +C++C           G  ++
Sbjct: 14  ESFGSVDGPGVRFV----VF--LQGC-----------ALRCKYCHNPETWS-AEGGTEWS 55

Query: 67  VDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETNG 120
            ++L   +   W      G+     ++GGEPL Q+D  LI+       +G   A++T G
Sbjct: 56  PEKLFQHV---WRYRNYWGKKGGITVSGGEPLRQMDF-LIKFFQLARAKGVHTALDTAG 110


>gi|322420719|ref|YP_004199942.1| Radical SAM domain-containing protein [Geobacter sp. M18]
 gi|320127106|gb|ADW14666.1| Radical SAM domain protein [Geobacter sp. M18]
          Length = 366

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104
           +C  C                +  L  L+ E    G +  R   LTGGEPL     + L+
Sbjct: 32  RCAHC--WKSAGNSEHPREVPLQSLLGLLREFRALGGEGVR---LTGGEPLRHPQWLELV 86

Query: 105 QALNKRGFE-IAVETNGTI 122
           +     GFE +A++TNG +
Sbjct: 87  RFAAAEGFETVALQTNGVL 105


>gi|253574226|ref|ZP_04851568.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251846703|gb|EES74709.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 335

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C      +        + +++A+ +      G ++ R   LTGGEPL++ D
Sbjct: 21  DRCNLRCVYCMPAEGMVFQPHEEIMSYEEIAETVSALTPMGLRKIR---LTGGEPLVRKD 77

Query: 101 VP-LIQALNK-RGFE-IAVETNG 120
           +  L+  L+   G E IA+ TNG
Sbjct: 78  LEQLVAMLSSIPGIEDIALTTNG 100


>gi|238619479|ref|YP_002914304.1| Radical SAM domain protein [Sulfolobus islandicus M.16.4]
 gi|238380548|gb|ACR41636.1| Radical SAM domain protein [Sulfolobus islandicus M.16.4]
          Length = 378

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            + +     + + +C  C   ++            ++   LI+E     E      +++G
Sbjct: 36  PVVTWNLTRKCNLKCLHC---YINASPEGEDGPTTEEALRLIDEM---AEMRIPLIIMSG 89

Query: 93  GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GEPL++ D   L      +G ++A+ TNGT+
Sbjct: 90  GEPLMRRDFFELASYARIKGIKLALSTNGTL 120


>gi|297200853|ref|ZP_06918250.1| radical SAM domain-containing protein [Streptomyces sviceus ATCC
           29083]
 gi|197712426|gb|EDY56460.1| radical SAM domain-containing protein [Streptomyces sviceus ATCC
           29083]
          Length = 792

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 30/99 (30%), Gaps = 18/99 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           C+L          A   + D   V           ++  A  I E   T   +  + VL 
Sbjct: 8   CDLACDHCYVYEHADQSWRDRPAVVSDEV------LELTAKRIAEHARTHRLDTVHVVLH 61

Query: 92  GGEPLL----------QVDVPLIQALNKRGFEIAVETNG 120
           GGEPLL          Q     +  L      I   TNG
Sbjct: 62  GGEPLLAGRDKLRLAAQNLSTALSGLCALDLRIH--TNG 98


>gi|197286357|ref|YP_002152229.1| radical SAM superfamily protein [Proteus mirabilis HI4320]
 gi|194683844|emb|CAR44964.1| radical SAM superfamily protein [Proteus mirabilis HI4320]
          Length = 288

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 43/143 (30%), Gaps = 47/143 (32%)

Query: 22  RVAVFCRFSGCNLWSGREQD------------------------------RLSAQCRFCD 51
           R+A+F    GCNL      +                                S +C  CD
Sbjct: 23  RLAIF--LQGCNLRCKNCHNPYTMGICDNCGDCIATCPQQALSLQNGVVNWNSHRCEQCD 80

Query: 52  T--DFVGIQGTKGG-RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
           T       Q +     Y VD+L  +  +             ++GGE  LQ+   LI    
Sbjct: 81  TCIQQCPRQSSPMTLTYTVDELIAITRKYAAFING----VTVSGGESTLQLPF-LIDYFK 135

Query: 109 K-------RGFEIAVETNGTIEP 124
                   R     +++NGT+  
Sbjct: 136 AIKAAPDLRHLTCLIDSNGTLSL 158


>gi|302541338|ref|ZP_07293680.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302458956|gb|EFL22049.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Streptomyces himastatinicus ATCC 53653]
          Length = 338

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 39  CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 80

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  +++ L +R   + + TN  +   + +D    SP     + I G +E
Sbjct: 81  GGEPLMHPQIDEIVRQLVQRKKYVFLCTN-AMLLRKKMDNFTPSPYFAFAVHIDGLRE 137


>gi|229584544|ref|YP_002843045.1| Radical SAM domain protein [Sulfolobus islandicus M.16.27]
 gi|228019593|gb|ACP55000.1| Radical SAM domain protein [Sulfolobus islandicus M.16.27]
          Length = 378

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            + +     + + +C  C   ++            ++   LI+E     E      +++G
Sbjct: 36  PVVTWNLTRKCNLKCLHC---YINASPEGEDGPTTEEALRLIDEM---AEMRIPLIIMSG 89

Query: 93  GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GEPL++ D   L      +G ++A+ TNGT+
Sbjct: 90  GEPLMRRDFFELASYARIKGIKLALSTNGTL 120


>gi|317182080|dbj|BAJ59864.1| molybdenum cofactor biosynthesis protein MoaA [Helicobacter pylori
           F57]
          Length = 330

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 46  QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102
           +C++C   T              +D + + ++     G K+ R   +TGGEPLL+     
Sbjct: 24  RCQYCMPTTPLNFFDDE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDE 78

Query: 103 LIQALNKRGFEIA--VETNG 120
            I  L+    E+A  + TNG
Sbjct: 79  FIAKLHAYNKEVALVLSTNG 98


>gi|190894331|ref|YP_001984625.1| putative biosynthetic heme protein [Rhizobium etli CIAT 652]
 gi|190699992|gb|ACE94075.1| putative biosynthetic heme protein [Rhizobium etli CIAT 652]
 gi|327192750|gb|EGE59684.1| putative biosynthetic heme protein [Rhizobium etli CNPAF512]
          Length = 422

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 17/118 (14%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C    VG +  KG  +N++ +  LIE+    G    R   ++
Sbjct: 49  CNL-----------GCHHCYIAGVGPKA-KGIDFNLEAIQGLIEQALPNGL---RKVKVS 93

Query: 92  GGEPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
           GGEP++  + + +++ L   G  E+  ETNGT+     I+ +   P     + +    
Sbjct: 94  GGEPMVHKEFMAVMEYLASCGLKELVFETNGTLFDEFTIEQLSRLPNLTVFISLDHFD 151


>gi|170726599|ref|YP_001760625.1| pyrroloquinoline quinone biosynthesis protein PqqE [Shewanella
           woodyi ATCC 51908]
 gi|169811946|gb|ACA86530.1| coenzyme PQQ biosynthesis protein E [Shewanella woodyi ATCC 51908]
          Length = 371

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 21/143 (14%)

Query: 33  NLWSGREQDRL-SAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E        C +C   TD     G +      +   D++ +    G  +  +  
Sbjct: 10  PLWLLAELTYECPLHCAYCSNPTDL----GKREDELTTEAWLDVLSQARELGSVQLGF-- 63

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
            +GGEPLL+ D+  L++   K GF   + T+G          I ++ K    LK+ G   
Sbjct: 64  -SGGEPLLRKDLEILVEHGRKLGFYTNLITSG----------IGLTEKRIKQLKLAGLDH 112

Query: 149 LKLVFPQVNVSPENYIGFDFERF 171
           +++ F   +    + I    + F
Sbjct: 113 IQISFQAADPQLNDAIAGRGKAF 135


>gi|325662619|ref|ZP_08151219.1| molybdenum cofactor biosynthesis protein A [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471116|gb|EGC74342.1| molybdenum cofactor biosynthesis protein A [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 332

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 19/130 (14%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +CR+C        G K      +  L ++ E  WI  E       +TGGEPL++ 
Sbjct: 18  DRCNLRCRYC-----MPDGIKSIPMEQILTLEEIAEVCWIASELGITKFKVTGGEPLVRK 72

Query: 100 D-VPLIQALNKRGF--EIAVETNGTIEP-------PQGIDWICVSPKAGCDLK---IKGG 146
             + LI+ L    +  ++ + TNG +           GID I VS    C  K   I G 
Sbjct: 73  GCMELIRMLKALPYTEQVTLTTNGILLAAYAKELKEVGIDGINVSLDTLCAEKFAEITGY 132

Query: 147 QELKLVFPQV 156
             LK V   +
Sbjct: 133 DRLKDVLEGI 142


>gi|317012578|gb|ADU83186.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           Lithuania75]
          Length = 321

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 29/173 (16%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLLQV-DV 101
           +C++C      +  T    ++ ++L    +++E   I  ++  +   +TGGEPLL+    
Sbjct: 24  RCQYC------MPATPLNFFDDEELLPLDNVLEFLKIAIDEGVKKIRITGGEPLLRKGLD 77

Query: 102 PLIQALNKRGFEIA--VETNGTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQEL 149
             I  L+    E+A  + TNG +      D        + V   S K+   LKI     L
Sbjct: 78  EFIAKLHAYNNEVALVLSTNGFLLKKMAKDLKNAGLSRVNVSLDSLKSDRVLKISQKDAL 137

Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
           K     +  S +  +           M     +E   L + Y       R+ +
Sbjct: 138 KNTLEGIEESLKVGLKLKLNTVV---MKSVNDDEILEL-LEYAKNR---RIQI 183


>gi|258512763|ref|YP_003186197.1| molybdenum cofactor biosynthesis protein A [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479489|gb|ACV59808.1| molybdenum cofactor biosynthesis protein A [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 341

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 18/109 (16%)

Query: 41  DRLSAQCRFC-DTDFVGIQGT---KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
           DR + +C +C  +D  G            + D++A L+      G ++ R   LTGGEPL
Sbjct: 25  DRCNFRCPYCMPSDVFGPDYPFLRPDALMSPDEIAKLVRALVPLGLEKVR---LTGGEPL 81

Query: 97  LQVD-VPLIQALNKRG--FEIAVETNGTIEPPQ--------GIDWICVS 134
           L+ + V +++ +       EIA+ TNG++   +        G+  I VS
Sbjct: 82  LRREVVEIVEKVAAVPGLHEIAMTTNGSLLTREKAMALKKAGLTRITVS 130


>gi|182417703|ref|ZP_02949022.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum
           5521]
 gi|237669148|ref|ZP_04529132.1| glycyl-radical enzyme activating family protein [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378427|gb|EDT75958.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum
           5521]
 gi|237657496|gb|EEP55052.1| glycyl-radical enzyme activating family protein [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 310

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 24/124 (19%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
           G    V  +   ++++ +          L+GGEPL+Q +  + L++A    G+   +ET 
Sbjct: 110 GKEMTVYDVIKELKKEDVIFRCSKGGVTLSGGEPLMQPEFSIELLKACKSLGWHTTMETT 169

Query: 120 G----------------------TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
           G                      TI+      +  VS K   +   K    +  V  +V 
Sbjct: 170 GYADESVIEDVMPWVDLLLMDFKTIDESMHFKYTGVSNKIILENAKKIVNLVPEVIARVP 229

Query: 158 VSPE 161
           V PE
Sbjct: 230 VIPE 233


>gi|305664203|ref|YP_003860491.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378772|gb|ADM28611.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
          Length = 486

 Score = 44.2 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 18/90 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   +           ++ +   L++E    G        L+
Sbjct: 136 CNL-----------RCLHC---YQRADRPLPDELSLSEKLSLVDELDKIGVAA---VALS 178

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           GGEP +  D   +++AL+ RG  +A  TNG
Sbjct: 179 GGEPTIHPDYFTIVKALSSRGIYVATATNG 208


>gi|21492976|ref|NP_660051.1| putative biosynthetic heme protein [Rhizobium etli CFN 42]
 gi|21467389|gb|AAM55052.1| putative biosynthetic heme protein [Rhizobium etli CFN 42]
          Length = 422

 Score = 44.2 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 17/118 (14%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C    VG +  KG  +N++ +  LIE+    G    R   ++
Sbjct: 49  CNL-----------GCHHCYIAGVGPKA-KGIDFNLEAIQGLIEQALPNGL---RKVKVS 93

Query: 92  GGEPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
           GGEP++  + + +++ L   G  E+  ETNGT+     I+ +   P     + +    
Sbjct: 94  GGEPMVHKEFMAVMEYLASCGLKELVFETNGTLFDEFTIEQLSRLPNLTVFISLDHFD 151


>gi|320161123|ref|YP_004174347.1| oxidoreductase [Anaerolinea thermophila UNI-1]
 gi|319994976|dbj|BAJ63747.1| oxidoreductase [Anaerolinea thermophila UNI-1]
          Length = 395

 Score = 43.9 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 26/116 (22%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            +GCNL            C  C      +   +  + ++     ++E   I    E +  
Sbjct: 56  TTGCNL-----------HCVTC---IRNVWEDEEAQMSMQTFERILE--GIDHLPELKRV 99

Query: 89  VLTG-GEPLLQVDV-PLIQALNKRGFEIAVETNGTI--------EPPQGIDWICVS 134
           V TG GEPL   ++  +I+ + +RG  + V TNG +            G+D + VS
Sbjct: 100 VFTGFGEPLTHKNIFDMIEEIRRRGIAVTVGTNGLLLNEDKARMLVEAGVDRLVVS 155


>gi|310642696|ref|YP_003947454.1| pyruvate formate-lyase 1-activating enzyme [Paenibacillus polymyxa
           SC2]
 gi|309247646|gb|ADO57213.1| Pyruvate formate-lyase 1-activating enzyme [Paenibacillus polymyxa
           SC2]
          Length = 252

 Score = 43.9 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 34/123 (27%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F T+ G G          RF     GC             +C++C   DT        
Sbjct: 10  ETFGTVDGPG---------IRFVLFMQGC-----------LLKCQYCHNPDT----WALN 45

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKR-GFEIAVE 117
           +G    ++++   IE         G    ++GGEP LQ      L + + +R      ++
Sbjct: 46  EGNPMTLEEVLAEIEPYLAYYRSSGGGLTVSGGEPTLQAHFVAELFKEVKRRWNLHTTLD 105

Query: 118 TNG 120
           +NG
Sbjct: 106 SNG 108


>gi|304313308|ref|YP_003812906.1| Heme D1 biosynthesis protein [gamma proteobacterium HdN1]
 gi|301799041|emb|CBL47284.1| Heme D1 biosynthesis protein [gamma proteobacterium HdN1]
          Length = 390

 Score = 43.9 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 17/102 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         +      D DF           + +++  ++++     +      +L+
Sbjct: 36  CNLTCKHCYSISA------DIDF-------PDELSKEEVFTVMDDLK---QFRVPALILS 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
           GGEPL++ D+  + +   K GF + + +NGT+   Q ID I 
Sbjct: 80  GGEPLMRPDIFEIAERAKKMGFYVGLSSNGTLITEQNIDQIV 121


>gi|289523484|ref|ZP_06440338.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503176|gb|EFD24340.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 225

 Score = 43.9 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 29/106 (27%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL----IEEQWIT 80
           +F   +GCN            +C FC            G    +Q+  L    + E   +
Sbjct: 26  IF--LTGCNF-----------RCPFC----------HNGLLVNEQVPALNDIKVLEHIKS 62

Query: 81  GEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
                   V++GGEP L +     ++  L + G  + ++TNG+   
Sbjct: 63  RRSFLDGVVISGGEPTLDIKRLEKILFQLKEVGLPVKLDTNGSNPL 108


>gi|302877843|ref|YP_003846407.1| pyruvate formate-lyase activating enzyme [Gallionella
           capsiferriformans ES-2]
 gi|302580632|gb|ADL54643.1| pyruvate formate-lyase activating enzyme [Gallionella
           capsiferriformans ES-2]
          Length = 262

 Score = 43.9 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 24/113 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF   SGC             +C +C   DT    ++   G    VD++   +++     
Sbjct: 44  VFV--SGC-----------QFRCLYCHNPDT----VKLHNGKLMQVDEVLSKLKKYARFL 86

Query: 82  EKEGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
              G    ++GGEPL+Q         +A ++      ++T G +      DW 
Sbjct: 87  RATGGL-TISGGEPLMQAHYIGEIFYRAKHELHLHTTLDTQGFLGAHLQDDWF 138


>gi|218281042|ref|ZP_03487618.1| hypothetical protein EUBIFOR_00177 [Eubacterium biforme DSM 3989]
 gi|218217691|gb|EEC91229.1| hypothetical protein EUBIFOR_00177 [Eubacterium biforme DSM 3989]
          Length = 380

 Score = 43.9 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 62/153 (40%), Gaps = 25/153 (16%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
             GCNL           +C +C +  +            +++++ ++       K+    
Sbjct: 172 TGGCNL-----------KCPYCHSKDLVYLKENMYPIANEKISEYLKSH----HKDLEGI 216

Query: 89  VLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT-------IEPPQGIDWICVSPK--AG 138
            ++GGEPL+    +  +Q   K  ++I + TNG        I     +D++ +  K    
Sbjct: 217 YISGGEPLMHEGILSFLQYAKKLDYKIKLHTNGMFYDRLKRILEDGLVDYVSLDIKNAPS 276

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
              KI G +++ L+  + +++      FD++ +
Sbjct: 277 AYAKICGVEDVDLMDIEKSLNELKASSFDYDVY 309


>gi|153003796|ref|YP_001378121.1| radical SAM domain-containing protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027369|gb|ABS25137.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 355

 Score = 43.9 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 11/113 (9%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL     +   +              G    R        +++E    G         T
Sbjct: 36  CNLACAMCECGAARA--------ASGPGRPPRRMEAALALRVLDE--RLGSPLREVIPST 85

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143
            GEPLL   +  L++   +RG  + + TNGT        W  +      D+KI
Sbjct: 86  MGEPLLWTGLGALVERCAERGLALNLTTNGTFPGRGAAAWAALLVPVASDVKI 138


>gi|163781559|ref|ZP_02176559.1| molybdenum cofactor biosynthesis protein A [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159882779|gb|EDP76283.1| molybdenum cofactor biosynthesis protein A [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 332

 Score = 43.9 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 18/107 (16%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR + +C FC   D +   +Q  +    + +++A L+      G ++ R   +TGGEPL+
Sbjct: 19  DRCNFRCFFCMPPDKEIEFLQ--RSELLSYEEIARLVGVLVSLGVRKAR---ITGGEPLM 73

Query: 98  QVDVP-LIQALNK-RGFE-IAVETNG-TIE------PPQGIDWICVS 134
           +  +  L++ L    G   IA+ TNG T++         G+  + VS
Sbjct: 74  RAHLENLVEKLASIEGLRDIALTTNGYTLDRKLDSLVSAGLKRVTVS 120


>gi|126465145|ref|YP_001040254.1| radical SAM domain-containing protein [Staphylothermus marinus F1]
 gi|126013968|gb|ABN69346.1| Radical SAM domain protein [Staphylothermus marinus F1]
          Length = 259

 Score = 43.9 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 15/92 (16%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL           +C+FC +        KG      Q+ + +    I  +++ +Y  L
Sbjct: 48  GCNL-----------RCKFCWSWRYSFYTNKGFFQTPQQVYEKLTR--IAEKRKYKYIRL 94

Query: 91  TGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120
           +GGEP   ++  + L++ L++  F   +ETNG
Sbjct: 95  SGGEPTITMKHVIQLLELLDQTKFVFILETNG 126


>gi|59891639|gb|AAX10036.1| putative Fe-S oxidoreductase [Pseudomonas fluorescens]
          Length = 425

 Score = 43.9 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C          +G     +Q   +  E    G  +  +   +
Sbjct: 59  PLWLLAELTYRCPLQCPYCSNPLDF--AEQGKELTTEQWIKVFREAREMGAAQLGF---S 113

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    K GF   + T+G
Sbjct: 114 GGEPLVRQDLAELIAEARKLGFYTNLITSG 143


>gi|149276408|ref|ZP_01882552.1| putative radical-activating enzyme [Pedobacter sp. BAL39]
 gi|149232928|gb|EDM38303.1| putative radical-activating enzyme [Pedobacter sp. BAL39]
          Length = 194

 Score = 43.9 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 20/112 (17%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104
           +C +C   +        GR +   +   +  + +  +      VL+GGE  +  D+ PL+
Sbjct: 2   RCIYC---YNPDIVLGKGRLSAPDVITFLHSRRLLLDG----VVLSGGECTMHKDIIPLV 54

Query: 105 QALNKRGFEIAVETNGTIE-------PPQGIDWICVSPKAGCDLKIKGGQEL 149
             + + GF + ++TNG++          Q ID I +  KA     + G  E+
Sbjct: 55  AEIKRMGFSVKLDTNGSMPGVLKKLLDAQLIDAIALDFKA-----LPGNYEM 101


>gi|92116484|ref|YP_576213.1| pyruvate formate-lyase activating [Nitrobacter hamburgensis X14]
 gi|91799378|gb|ABE61753.1| Pyruvate formate-lyase activating [Nitrobacter hamburgensis X14]
          Length = 275

 Score = 43.9 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 27/108 (25%)

Query: 21  GRVAV-FCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEE 76
           G   V F   SGC             +C +C   DT  +         + + +L+D +  
Sbjct: 52  GLRVVLFV--SGC-----------LLRCTYCHNPDTWHLKDGTYVSADHVLRRLSDFVPA 98

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG 120
               G        ++GGEP++Q  +   + +       G   A++T+G
Sbjct: 99  LLPLGGG----LTISGGEPMVQ--LAFTRRIFAGAKALGLHTAIQTSG 140


>gi|308068378|ref|YP_003869983.1| Predicted Fe-S oxidoreductase [Paenibacillus polymyxa E681]
 gi|305857657|gb|ADM69445.1| Predicted Fe-S oxidoreductase [Paenibacillus polymyxa E681]
          Length = 292

 Score = 43.9 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 22/98 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C FC  T  V          + +   +++++     +    +   
Sbjct: 16  CNL-----------ACSFCPQTQRV------KKFIDPEVFRNVLDQVKPHTDYIYLHVK- 57

Query: 91  TGGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQG 127
             GEPLL   + L+ ++ +++G ++ + TNGT+ P  G
Sbjct: 58  --GEPLLHPKIDLLLESAHEKGLKVNITTNGTLLPKTG 93


>gi|242239673|ref|YP_002987854.1| pyruvate formate lyase-activating enzyme 1 [Dickeya dadantii
           Ech703]
 gi|242131730|gb|ACS86032.1| pyruvate formate-lyase activating enzyme [Dickeya dadantii Ech703]
          Length = 246

 Score = 43.9 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 58/179 (32%), Gaps = 40/179 (22%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V++L   +          G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGREITVEELMKEVVTYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI----EPPQGIDWICVSPKAGC 139
                +GGE +LQ +      +A +++G    ++TNG +         +  +        
Sbjct: 72  GGVTASGGEAILQAEFVRDWFRACHEQGINTCLDTNGFVRRYDPVIDELLDVT------- 124

Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
           DL +   ++L     Q  V   N+   +F R+            N  + I Y    P W
Sbjct: 125 DLVMLDLKQLNDDIHQNLVGVSNHRTLEFARY--------LATRNQRVWIRYVVV-PGW 174


>gi|227829519|ref|YP_002831298.1| radical SAM protein [Sulfolobus islandicus L.S.2.15]
 gi|229578825|ref|YP_002837223.1| Radical SAM domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|229582435|ref|YP_002840834.1| Radical SAM domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|284997435|ref|YP_003419202.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5]
 gi|227455966|gb|ACP34653.1| Radical SAM domain protein [Sulfolobus islandicus L.S.2.15]
 gi|228009539|gb|ACP45301.1| Radical SAM domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|228013151|gb|ACP48912.1| Radical SAM domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|284445330|gb|ADB86832.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5]
          Length = 378

 Score = 43.9 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            + +     + + +C  C   ++            ++   LI+E     E      +++G
Sbjct: 36  PVVTWNLTRKCNLKCLHC---YINASPEGEDGSTTEEALRLIDEM---AEMRIPLIIMSG 89

Query: 93  GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GEPL++ D   L      +G ++A+ TNGT+
Sbjct: 90  GEPLMRRDFFELASYARIKGIKLALSTNGTL 120


>gi|15898450|ref|NP_343055.1| coenzyme PQQ synthesis protein E (pqqE-3) [Sulfolobus solfataricus
           P2]
 gi|13814875|gb|AAK41845.1| Coenzyme PQQ synthesis protein E (pqqE-3) [Sulfolobus solfataricus
           P2]
          Length = 378

 Score = 43.9 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            + +     + + +C  C   ++            ++   LI+E     E      +++G
Sbjct: 36  PVVTWNLTRKCNLKCLHC---YINASPEGEDGSTTEEALRLIDEM---AEMRIPLIIMSG 89

Query: 93  GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GEPL++ D   L      +G ++A+ TNGT+
Sbjct: 90  GEPLMRRDFFELASYARIKGIKLALSTNGTL 120


>gi|282164510|ref|YP_003356895.1| hypothetical protein MCP_1840 [Methanocella paludicola SANAE]
 gi|282156824|dbj|BAI61912.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 383

 Score = 43.9 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 27/98 (27%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GC            ++C +C             + +VD + +++E  W+   + G     
Sbjct: 12  GCP-----------SKCSYC-----WSSDPDSPKMSVDTIKEVVE--WLKEFRPGEAVTF 53

Query: 91  T--GGEPLL-------QVDVPLIQALNKRGFEIAVETN 119
           T  GGEPLL       +    L ++L  R    A++TN
Sbjct: 54  TFHGGEPLLAGADFYNKSLALLSKSLKDRKIAFAMQTN 91


>gi|238026593|ref|YP_002910824.1| molybdenum cofactor biosynthesis protein A [Burkholderia glumae
           BGR1]
 gi|237875787|gb|ACR28120.1| Molybdenum cofactor biosynthesis protein A [Burkholderia glumae
           BGR1]
          Length = 370

 Score = 43.9 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 25/114 (21%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +  +     ++++L + +   ++    E     +TGGE
Sbjct: 45  DRCNFRCVYCMPRDVFDKDYPFLPHS--ALLSLEEL-ERVARLFVAHGVEK--IRITGGE 99

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           PLL+ ++  LI+ L +         ++ + TNG++           G+  + VS
Sbjct: 100 PLLRKNLEFLIERLARMQTVGGHPLDLTLTTNGSLLARKARSLRDAGLTRVTVS 153


>gi|55821616|ref|YP_140058.1| pyruvate-formate lyase activating enzyme [Streptococcus
           thermophilus LMG 18311]
 gi|55823544|ref|YP_141985.1| pyruvate-formate lyase activating enzyme [Streptococcus
           thermophilus CNRZ1066]
 gi|116628329|ref|YP_820948.1| pyruvate-formate lyase activating enzyme [Streptococcus
           thermophilus LMD-9]
 gi|55737601|gb|AAV61243.1| pyruvate-formate lyase activating enzyme [Streptococcus
           thermophilus LMG 18311]
 gi|55739529|gb|AAV63170.1| pyruvate-formate lyase activating enzyme [Streptococcus
           thermophilus CNRZ1066]
 gi|116101606|gb|ABJ66752.1| Pyruvate-formate lyase-activating enzyme [Streptococcus
           thermophilus LMD-9]
 gi|312278954|gb|ADQ63611.1| Pyruvate formate-lyase 1-activating enzyme [Streptococcus
           thermophilus ND03]
          Length = 266

 Score = 43.9 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 67/181 (37%), Gaps = 42/181 (23%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC L           +C++C   DT       
Sbjct: 16  TESFGSVDGPG---------IRFIVFMQGCKL-----------RCQYCHNPDT-----WA 50

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIA 115
            K  +     + D++EE        G +    ++GGE +LQ+D    L     K G    
Sbjct: 51  MKSNKAVERTVEDVLEEALRFRHFWGEHGGITVSGGEAMLQIDFVTALFTEAKKLGIHCT 110

Query: 116 VETNG-----TIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
           ++T G     T E  + +D  + V+     D+K    ++ K V  Q N +   +  +  +
Sbjct: 111 LDTCGLSYRNTPEYHEVVDKLLAVTDLVLLDIKEIDPEQHKFVTRQPNKNILEFAQYLSD 170

Query: 170 R 170
           +
Sbjct: 171 K 171


>gi|218460677|ref|ZP_03500768.1| putative biosynthetic heme protein [Rhizobium etli Kim 5]
          Length = 341

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 17/118 (14%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C    VG +  KG  +N++ +  LIE+    G    R   ++
Sbjct: 49  CNL-----------GCHHCYIAGVGPKA-KGIDFNLEAIQGLIEQALPNGL---RKVKVS 93

Query: 92  GGEPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
           GGEP++  + + +++ L   G  E+  ETNGT+     I+ +   P     + +    
Sbjct: 94  GGEPMVHKEFMAVMEYLASCGLKELVFETNGTLFDEFTIEQLSRLPNLTVFISLDHFD 151


>gi|51246878|ref|YP_066762.1| pyruvate formate-lyase activating enzyme [Desulfotalea psychrophila
           LSv54]
 gi|50877915|emb|CAG37755.1| related to pyruvate formate-lyase activating enzyme [Desulfotalea
           psychrophila LSv54]
          Length = 340

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI--AVETN 119
           G    V ++ D +EE  I   + G    L+GGEP  Q +  L      R   I  AVET 
Sbjct: 142 GEEMTVKKVVDRVEEDAIFYARSGGGMTLSGGEPFAQAEFALALLREARHRRIKTAVETC 201

Query: 120 GT 121
           G 
Sbjct: 202 GA 203


>gi|300857746|ref|YP_003782729.1| hypothetical protein cpfrc_00329 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685200|gb|ADK28122.1| hypothetical protein cpfrc_00329 [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 236

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 29/126 (23%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
             A F    GC L           +C +C      +Q    G +++ +   L+  +    
Sbjct: 44  VAAAF--TQGCPL-----------RCVYC--HNSQLQAFTPGAHSLAEFLSLLSSRHGLI 88

Query: 82  EKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG---------TIEPPQGIDWI 131
           +      V++GGEP     +   I A++  GF + + T G           +P    DW+
Sbjct: 89  DAA----VISGGEPTAVRGLGDAIAAIHNIGFPVGIHTCGYAPSRIAELLRDPATTPDWV 144

Query: 132 CVSPKA 137
            +  KA
Sbjct: 145 GLDIKA 150


>gi|227872087|ref|ZP_03990461.1| [formate-C-acetyltransferase]-activating enzyme [Oribacterium sinus
           F0268]
 gi|227842068|gb|EEJ52324.1| [formate-C-acetyltransferase]-activating enzyme [Oribacterium sinus
           F0268]
          Length = 261

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 28/119 (23%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        VF    GC           + +C +C   DT        K 
Sbjct: 29  MESFGSVDGPGTRFI----VF--LQGC-----------AMRCLYCHNPDT----WAFKKE 67

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
                +++            KEG    ++GG+PLL +D  + L +   K+G    ++T+
Sbjct: 68  NLMTPEEVLKKAMRYQDYWGKEGG-ITVSGGDPLLHIDFLLALFRLAKKKGINTCLDTS 125


>gi|150014681|gb|ABR57203.1| PeaB [Pseudomonas putida]
          Length = 476

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 31/116 (26%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GCNL            C +C   D D    + + G + +       +E        E R
Sbjct: 110 TGCNL-----------SCTYCYKEDLD----KPSAGKKMSTATAEASVEMLLKESPDEER 154

Query: 87  Y-CVLTGGEPLLQVDVPLIQ--------ALNKRGFEIA--VETNGTIEPPQGIDWI 131
           Y  V  GGEPL   + PLI+           + G ++   + TN T+   + +DW+
Sbjct: 155 YSVVFFGGEPL--SNRPLIEHMVAYCERRFAEAGKQVEFIMTTNATLLTEEIVDWL 208


>gi|167630037|ref|YP_001680536.1| elongator protein 3/miab/nifb, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592777|gb|ABZ84525.1| elongator protein 3/miab/nifb, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 393

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 17/96 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C + D+D +   G    +  +  + DL        +      +L+
Sbjct: 47  CNLHC--------IHC-YSDSDEIEYPGELTTKEAIRFIDDL-------ADFNVPVLLLS 90

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           GGEPL++ D+  L+    KR   +   TNGT+  P 
Sbjct: 91  GGEPLMRPDIFDLVAHATKRNIRVTFSTNGTLITPD 126


>gi|260583914|ref|ZP_05851662.1| pyruvate formate-lyase 1-activating enzyme [Granulicatella elegans
           ATCC 700633]
 gi|260158540|gb|EEW93608.1| pyruvate formate-lyase 1-activating enzyme [Granulicatella elegans
           ATCC 700633]
          Length = 253

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 47/131 (35%), Gaps = 37/131 (28%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +C FC   DT  +G   
Sbjct: 12  TESFGSVDGPG---------VRFVTFMQGC-----------RMRCEFCHNPDTWNIG--- 48

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117
             G +    +L +          K+G    ++GGEPLLQVD  +   +     G    ++
Sbjct: 49  -GGKKITSQELLEEALRYRAFWGKKGG-VTVSGGEPLLQVDFLIDFFKRCKAMGIHTTLD 106

Query: 118 TNG---TIEPP 125
           + G   T + P
Sbjct: 107 SCGMPFTYDEP 117


>gi|224538042|ref|ZP_03678581.1| hypothetical protein BACCELL_02931 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520332|gb|EEF89437.1| hypothetical protein BACCELL_02931 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 203

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 38/112 (33%), Gaps = 25/112 (22%)

Query: 13  LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
           + GEG           F GC L            C++C              Y+ +QL +
Sbjct: 17  IDGEGVTTLVA-----FHGCPL-----------HCKYCLNPQSLSDDFDFPLYSCEQLYE 60

Query: 73  L--IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA---LNKRGFEIAVETN 119
              ++E +    + G      GGEP L      I     L  + + I VET+
Sbjct: 61  RVKVDELYFLATRGG--ITFGGGEPCL--RSEFISRFRELCGKEWRITVETS 108


>gi|86739540|ref|YP_479940.1| radical SAM family protein [Frankia sp. CcI3]
 gi|86566402|gb|ABD10211.1| Radical SAM [Frankia sp. CcI3]
          Length = 334

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 40/118 (33%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C             R +VD     +EE             + 
Sbjct: 38  CNL-----------SCTGCG-KIQHPASVLKQRMSVDDALAAVEECG------APVVAIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  ++  L KR   + + TNG +   + +     SP     L I G +E
Sbjct: 80  GGEPLMHPQIHEIVNQLVKRKKFVILCTNG-LLLQKKLKNFTPSPYFTFVLHIDGLRE 136


>gi|322434186|ref|YP_004216398.1| molybdenum cofactor biosynthesis protein A [Acidobacterium sp.
           MP5ACTX9]
 gi|321161913|gb|ADW67618.1| molybdenum cofactor biosynthesis protein A [Acidobacterium sp.
           MP5ACTX9]
          Length = 355

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 20/108 (18%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99
           DR + +C +C T      G +G  ++   + D +    +          LTGGEPLL+  
Sbjct: 39  DRCNYRCVYCRT------GNEGAMFDELPIEDYLRIIRVFVSLGIEKVRLTGGEPLLRAG 92

Query: 100 DVPLIQALN------KRGFEIAVETNGTIEP-------PQGIDWICVS 134
            + LIQ L+          +IA+ TNG +           G+  I VS
Sbjct: 93  LLDLIQELSGERTLGGERLDIALTTNGHLLAGLAQPLKDAGLSRITVS 140


>gi|290968353|ref|ZP_06559894.1| pyruvate formate-lyase 1-activating enzyme [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781628|gb|EFD94215.1| pyruvate formate-lyase 1-activating enzyme [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 249

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 18/100 (18%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK- 83
           +F    GC++           +CR+C          +   Y +    D+++E        
Sbjct: 27  IF--LQGCHM-----------RCRYCHNPETWKSNEE-EEYTLRSAEDVLKEALRYRSYW 72

Query: 84  -EGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNG 120
             G    ++GGE LLQ+D  L    +  ++G   A++T G
Sbjct: 73  KNGGGITISGGEALLQMDFVLAVFSSAKEKGIHTALDTAG 112


>gi|257053084|ref|YP_003130917.1| tRNA-modifying enzyme [Halorhabdus utahensis DSM 12940]
 gi|256691847|gb|ACV12184.1| Wyosine base formation domain protein [Halorhabdus utahensis DSM
           12940]
          Length = 330

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 54/185 (29%), Gaps = 32/185 (17%)

Query: 38  REQDRLSAQCRFCDTDFVG--IQGTKGGRYNVDQLADL-----------------IEEQW 78
               R + +C FC  D  G   +       + + + D                  +  + 
Sbjct: 54  TPVVRCNERCVFCWRDHAGHTYELDDVEWDDPEAVVDASIDLQRKLLSGYGGNDDVPRER 113

Query: 79  ITGEKEGRYCVLT-GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE---PPQGIDWICV 133
                E R+  ++  GEP L   +P LI+A + RG    + +NGT            + V
Sbjct: 114 FEEAMEPRHVAISLDGEPTLYPHLPELIEAFHDRGITTFLVSNGTDPEMLAECDPTQLYV 173

Query: 134 SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
           S       +      +K V         + +     +      D       T L   Y  
Sbjct: 174 S--VDAADRRTFDDVVKAVEDDAWDRLIDTLDVLAAK------DDTRTVLRTTLIDGYNM 225

Query: 194 QNPKW 198
             P W
Sbjct: 226 ARPAW 230


>gi|308069631|ref|YP_003871236.1| Pyruvate formate-lyase activating enzyme (PFL-activating enzyme)
           [Paenibacillus polymyxa E681]
 gi|305858910|gb|ADM70698.1| Pyruvate formate-lyase activating enzyme (PFL-activating enzyme)
           [Paenibacillus polymyxa E681]
          Length = 252

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 34/123 (27%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F T+ G G          RF     GC             +C++C   DT        
Sbjct: 10  ETFGTVDGPG---------IRFVLFMQGC-----------LLKCQYCHNPDT----WALN 45

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKR-GFEIAVE 117
           +G    ++++   IE         G    ++GGEP LQ      L + + +R      ++
Sbjct: 46  EGNPMTLEEVLAEIEPYLAYYRSSGGGLTVSGGEPTLQAHFVAELFKEVKRRWNLHTTLD 105

Query: 118 TNG 120
           +NG
Sbjct: 106 SNG 108


>gi|317154198|ref|YP_004122246.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316944449|gb|ADU63500.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 236

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 22/99 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD--LIEEQWITGE 82
           +F    GCNL           +C  C        G      +   + +   I+       
Sbjct: 33  IF--LGGCNL-----------RCPTC------HNGQLAWDMHTLPIIEPPRIKAYLRDRA 73

Query: 83  KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
                  +TGGEP     +  L+  + + G  + ++TNG
Sbjct: 74  GWLDGVTVTGGEPTTVPGLAGLLFEIRQSGLPVKLDTNG 112


>gi|152980414|ref|YP_001353667.1| molybdenum cofactor biosynthesis protein A [Janthinobacterium sp.
           Marseille]
 gi|151280491|gb|ABR88901.1| molybdenum cofactor biosynthesis protein A [Janthinobacterium sp.
           Marseille]
          Length = 370

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 25/136 (18%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +   +    + +++  +       G ++ R   LTGGE
Sbjct: 48  DRCNFRCVYCMPKEVFDKDYAFL--PQSSLLSFEEITRITSLFVAHGVEKIR---LTGGE 102

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ +V  LI  L+       R  ++ + TNG++           G+  + VS  A  D
Sbjct: 103 PLLRKNVEKLIAMLSALRTPDGRELDLTLTTNGSLLARKAQALKDAGLKRVTVSLDALDD 162

Query: 141 LKIKGGQELKLVFPQV 156
              K   ++      V
Sbjct: 163 KVFKQMNDVDFAVSDV 178


>gi|121603640|ref|YP_980969.1| pyrroloquinoline quinone biosynthesis protein PqqE [Polaromonas
           naphthalenivorans CJ2]
 gi|120592609|gb|ABM36048.1| coenzyme PQQ biosynthesis protein E [Polaromonas naphthalenivorans
           CJ2]
          Length = 380

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 11/91 (12%)

Query: 34  LWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           LW   E   R    C FC   T +  +Q       +  Q  D++ +    G  +  +   
Sbjct: 19  LWLLAELTYRCPLHCVFCYNPTQYARLQ----EEMSTAQWVDVMRQARALGAAQLGF--- 71

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           +GGEP+L+ D+  L+Q     GF   + T+G
Sbjct: 72  SGGEPMLRDDLEELVQEARHLGFYTNLITSG 102


>gi|304437666|ref|ZP_07397618.1| nitrite reductase heme biosynthesis J protein [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304369299|gb|EFM22972.1| nitrite reductase heme biosynthesis J protein [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 396

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +CR C   ++   G K  G    ++    I++     E      + 
Sbjct: 47  CNL-----------RCRHC---YMESDGQKYDGELTTEEAKRFIDDL---AEFRVPVLLF 89

Query: 91  TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           +GGEPL++ D   L +   +RG    + TNGT+
Sbjct: 90  SGGEPLIRPDFFELAEHAAERGVRPTLSTNGTL 122


>gi|296241754|ref|YP_003649241.1| radical SAM domain-containing protein [Thermosphaera aggregans DSM
           11486]
 gi|296094338|gb|ADG90289.1| Radical SAM domain protein [Thermosphaera aggregans DSM 11486]
          Length = 557

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 8/90 (8%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           L +    +R +  C +C   F   + +      +++Q+ D++      G        LTG
Sbjct: 110 LVNMVITNRCNLSCWYC---FFYAEASGYVYEPSLEQIRDMVRSIKKQGVTVA--IQLTG 164

Query: 93  GEPLLQVDV-PLIQALNKRGFE-IAVETNG 120
           GEPLL+ D+  +++ L   G   I + TNG
Sbjct: 165 GEPLLRDDLIDIVKLLRDEGVRHIQLNTNG 194


>gi|85860302|ref|YP_462504.1| metallo cofactor biosynthesis protein [Syntrophus aciditrophicus
           SB]
 gi|85723393|gb|ABC78336.1| metallo cofactor biosynthesis protein [Syntrophus aciditrophicus
           SB]
          Length = 232

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNV---DQLADLIEEQWITGEKEGRYCVLTG-GEPL 96
           +R SA+C FC        G  G R  +       +++ E      K+    V TG GEP 
Sbjct: 56  NRCSARCIFC--IRNFSDGVYGYRLRLSREPSEEEILRELEHFDLKKYGEIVFTGFGEPT 113

Query: 97  LQVDVPL--IQALNKRGFEIAVETNG 120
            ++D  L   + L+KRG  + ++TNG
Sbjct: 114 CRLDTVLRITEWLHKRGIPVRLDTNG 139


>gi|307298766|ref|ZP_07578569.1| Radical SAM domain protein [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915931|gb|EFN46315.1| Radical SAM domain protein [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 481

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 21/92 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C   + G+ G K  + + ++++ +I +    G       ++T
Sbjct: 121 CNL-----------NCVGC---YAGLYGRKY-QLSKEEVSSIIRQSNELGIYFF---IIT 162

Query: 92  GGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
           GGEP +    + + +  N   F++   TNGT+
Sbjct: 163 GGEPFVWPHLLEIFEEFNDSYFQVY--TNGTL 192


>gi|195953929|ref|YP_002122219.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195933541|gb|ACG58241.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 327

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 19/106 (17%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           D+ + +C +C   + D++  +       + +++ D++   ++  +   +   +TGGEPL+
Sbjct: 21  DKCNMKCSYCRPINIDYISHK----DMLSYEEIRDIV---FVMKDFGLKKVRITGGEPLV 73

Query: 98  QVDV-PLIQALNKRGFE-IAVETNGT-------IEPPQGIDWICVS 134
           +  V  L+  L     E I++ TNGT       +    G+D I +S
Sbjct: 74  RPQVWNLVSLLKATNLESISMTTNGTYLKEYAKLLKEAGLDTINIS 119


>gi|54309906|ref|YP_130926.1| pyruvate formate lyase-activating enzyme 1 [Photobacterium
           profundum SS9]
 gi|46914345|emb|CAG21124.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium
           profundum SS9]
          Length = 246

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 54/181 (29%), Gaps = 45/181 (24%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G   +V+++         
Sbjct: 21  IRFIIFMQGC-----------LMRCQYCHNRDT----WDLHDGREISVEEIMKEAVSYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-----TIEPPQGIDWIC 132
             +  G     +GGE +LQ +      +A         ++TNG     T    + +D   
Sbjct: 66  FMKASGGGVTASGGEAMLQPEFIRDFFRAAQAENIHTCLDTNGYIRKHTDVVDEVLD--- 122

Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC 192
                  DL +   +++     Q  V   N    DF R+          +      I Y 
Sbjct: 123 -----ATDLVMLDLKQMDDTIHQELVGVSNKRVLDFARY--------LHKRGQKTWIRYV 169

Query: 193 F 193
            
Sbjct: 170 I 170


>gi|308186794|ref|YP_003930925.1| Coenzyme PQQ synthesis protein E [Pantoea vagans C9-1]
 gi|308057304|gb|ADO09476.1| Coenzyme PQQ synthesis protein E [Pantoea vagans C9-1]
          Length = 388

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF   +       + +Q  ++  +    G  +  +  
Sbjct: 19  PLWLLAELTYRCPLQCPYCSNPLDFAQQEKE----LSTEQWIEVFRQARAMGSVQLGF-- 72

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +GGEPL++ D+P LI+A    GF   + T+G
Sbjct: 73  -SGGEPLVRKDLPELIKAARDLGFYTNLITSG 103


>gi|291165209|gb|ADD81200.1| PqqE [Pantoea ananatis]
 gi|327393848|dbj|BAK11270.1| coenzyme PQQ synthesis protein E PqqE [Pantoea ananatis AJ13355]
          Length = 433

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF   +       + +Q  D+  +    G  +  +  
Sbjct: 64  PLWLLAELTYRCPLQCPYCSNPLDFAQQEKE----LSTEQWIDVFRQARAMGSVQLGF-- 117

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +GGEPL + D+P LI+A    GF   + T+G
Sbjct: 118 -SGGEPLTRKDLPDLIKAARDLGFYTNLITSG 148


>gi|134094629|ref|YP_001099704.1| molybdenum cofactor biosynthesis protein A [Herminiimonas
           arsenicoxydans]
 gi|133738532|emb|CAL61577.1| Molybdenum cofactor biosynthesis protein A [Herminiimonas
           arsenicoxydans]
          Length = 373

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 25/136 (18%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +  +     + +++  +       G ++ R   LTGGE
Sbjct: 48  DRCNFRCVYCMPKEVFDKDYAFLPHS--SLLSFEEITRIASLFVAHGVEKIR---LTGGE 102

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ +V  LI  L+       R  ++ + TNG++           G+  + VS  A  D
Sbjct: 103 PLLRKNVERLIAMLSALRTPDGRELDLTLTTNGSLLARKAQALKDAGLKRVTVSLDALDD 162

Query: 141 LKIKGGQELKLVFPQV 156
              K   ++      V
Sbjct: 163 KIFKQMNDVDFAVSDV 178


>gi|303240613|ref|ZP_07327128.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
 gi|302591850|gb|EFL61583.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
          Length = 297

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 11/103 (10%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY------NVDQLADLIEEQWITGEK 83
           +GC + +G         C  C      +  + G           +++   I+ + I    
Sbjct: 64  AGCFIVNGENHYFNETNCVRC--GKCVLNCSHGALAYNLREGTPEEIFKEIKAELILLRN 121

Query: 84  EGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEP 124
            G    L+GGEP+LQ      L++     G   A+ET+G +  
Sbjct: 122 IGG-ITLSGGEPMLQYLEAKELLKLCKGMGAHTAIETSGAVNI 163


>gi|317128920|ref|YP_004095202.1| molybdenum cofactor biosynthesis protein A [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473868|gb|ADU30471.1| molybdenum cofactor biosynthesis protein A [Bacillus
           cellulosilyticus DSM 2522]
          Length = 339

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 26/113 (23%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +CR+C      D +F  +   K     ++++A + +          +   +TGGE
Sbjct: 22  DRCNFRCRYCMPPEIFDKNFQFL--PKNEVLTLEEMAYITK--LFVKAASIKKVRITGGE 77

Query: 95  PLLQVDVPLIQALNKRGFEI-AVE-----TNGTIEP-------PQGIDWICVS 134
           PL++ +V  + AL +   EI A+E     TNG++ P         G+D + +S
Sbjct: 78  PLMRQNVSHLIALIR---EIEAIEDIAMTTNGSLLPKYAKELKENGLDRVTIS 127


>gi|302537970|ref|ZP_07290312.1| radical SAM domain-containing protein [Streptomyces sp. C]
 gi|302446865|gb|EFL18681.1| radical SAM domain-containing protein [Streptomyces sp. C]
          Length = 343

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 38  CNLAC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  +++ L  R   + + TN  +   + I+    SP     + I G +E
Sbjct: 80  GGEPLMHPQIHEIVRQLVARRKYVFLCTN-ALLLRKKIEKFTPSPYFAFAVHIDGLRE 136


>gi|91201841|emb|CAJ74901.1| similar to nirJ/moaA/ppqE family of cofactor synthesis proteins
           [Candidatus Kuenenia stuttgartiensis]
          Length = 359

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 25/111 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C+ C   +      KG     +    LI++   +  K     +L+
Sbjct: 30  CNLT-----------CKHC---YAYANQIKGKELGSEDTISLIQQFKQSAVKLA---ILS 72

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134
           GGEPL++ D+  +   L K G +  + TNG +          + +D+I +S
Sbjct: 73  GGEPLMRKDIFDITCELKKAGIKTYLSTNGILIGEDNINRIKEQLDYIGIS 123


>gi|296160272|ref|ZP_06843090.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. Ch1-1]
 gi|295889483|gb|EFG69283.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. Ch1-1]
          Length = 367

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 18/95 (18%)

Query: 41  DRLSAQCRFC---DT---DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           D+ + +C +C   +T   D+  +  +   R + +Q+  L +   + G ++ R   +TGGE
Sbjct: 43  DQCNFRCTYCMPRETFGADYPFLASS--ERMSFEQILKLAKAFTLLGVEKIR---ITGGE 97

Query: 95  PLLQVDVP-LIQALNKR----GFEI--AVETNGTI 122
           PLL+  +  LI+ L K     G  +  A+ TNG++
Sbjct: 98  PLLRRGLESLIEQLAKLTTASGKPVELALTTNGSL 132


>gi|297527362|ref|YP_003669386.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Staphylothermus hellenicus DSM 12710]
 gi|297256278|gb|ADI32487.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Staphylothermus hellenicus DSM 12710]
          Length = 267

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 70/195 (35%), Gaps = 39/195 (20%)

Query: 29  FSGCNLWSGREQDR-----LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
             GCNL      +        + C + D               +++L + +E   I  + 
Sbjct: 41  LCGCNLKCPFCHNWMLAINHPSTCHYLD---------------INKLIEELESARILIDY 85

Query: 84  EGRYCVLTGGEPLLQ---VDVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICV 133
                 +TGGEPL Q   ++  L  A N  G  I++ TN T+  P         +D +  
Sbjct: 86  LH----VTGGEPLTQHRELEKMLTIAKNNIGVNISINTNFTLHKPLKHLINTGIVDHLAT 141

Query: 134 SPKAGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
             K   DL     +E+     KL    + +  E  +  +     ++ +D     ++   A
Sbjct: 142 DLKIPYDLLYGHSKEVADALWKLFLKSLTLVSEYSVPLELRIPIMKNIDIKVFRKHLAEA 201

Query: 189 ISYCFQNPKWRLSVQ 203
           +    ++  + + VQ
Sbjct: 202 LDKLDKHSNYYVIVQ 216


>gi|297569896|ref|YP_003691240.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296925811|gb|ADH86621.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 355

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 16/92 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR        ++  +   ++ D+   ++++            VL+
Sbjct: 16  CNLNC--------VHCR----SSSELEAKEHPDFSFDEAKRILDD---IASYASPVVVLS 60

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ DV  +      +G  + + TNGT+
Sbjct: 61  GGEPLLRDDVFEIAAYGTGKGLRMCLATNGTL 92


>gi|254467660|ref|ZP_05081068.1| radical SAM domain protein [Rhodobacterales bacterium Y4I]
 gi|206684234|gb|EDZ44719.1| radical SAM domain protein [Rhodobacterales bacterium Y4I]
          Length = 474

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 39/136 (28%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GCNL            C +C   D   V  +G K       + A+++  +    +++  
Sbjct: 106 TGCNL-----------ACSYCYKEDLA-VPSKGQKMAFDTARKSAEMLLAENP--DRDSY 151

Query: 87  YCVLTGGEPLLQVDVPLIQA--------LNKRGFEI--AVETNGTIEPPQGIDW------ 130
             V  GGEPL   ++PLI+             G  +  ++ TN T+     IDW      
Sbjct: 152 NIVFFGGEPL--SNLPLIRQVVDWAEPHFAALGKAVNFSLTTNATLLTEPLIDWLDEHRF 209

Query: 131 -ICVS---PKAGCDLK 142
            + VS   PKA  DL 
Sbjct: 210 GLTVSIDGPKAQHDLN 225


>gi|300716075|ref|YP_003740878.1| Pyruvate formate lyase activating enzyme 1 [Erwinia billingiae
           Eb661]
 gi|299061911|emb|CAX59027.1| Pyruvate formate lyase activating enzyme 1 [Erwinia billingiae
           Eb661]
          Length = 246

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 50/150 (33%), Gaps = 27/150 (18%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V++L   +          G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEELMKDVVSYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKAGCDL 141
                +GGE +LQ +      +A +  G    ++TNG        ID  + V+     DL
Sbjct: 72  GGVTASGGEAILQAEFVRDWFRACHAEGINTCLDTNGFVRRYDPVIDELLEVTDLVMLDL 131

Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERF 171
           K            QV V   N+   DF R+
Sbjct: 132 KQINDD-----VHQVLVGVSNHRTLDFARY 156


>gi|224585929|ref|YP_002639728.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224470457|gb|ACN48287.1| putative pyruvate formate lyase activating enzyme 2 [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
          Length = 279

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS--------------AQCRF 49
           IF     +L  G+G       VF  F GC        +  S               +C  
Sbjct: 11  IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLRCTP 65

Query: 50  C--DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
           C  D D       +  G    +D+L   + +  I     G    L+GGE L+Q       
Sbjct: 66  CLRDADECPSGAFERIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 125

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L + G   A+ET G
Sbjct: 126 LQRLRRWGVPCAIETAG 142


>gi|147677311|ref|YP_001211526.1| Fe-S oxidoreductases [Pelotomaculum thermopropionicum SI]
 gi|146273408|dbj|BAF59157.1| predicted Fe-S oxidoreductases [Pelotomaculum thermopropionicum SI]
          Length = 330

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 20/110 (18%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105
           C+ C   +           + ++   LI++         +  + +GGEPL++ D+  L+ 
Sbjct: 15  CKHC---YRDAGAKAAEELSTEEGLALIDQ---IAGAGFKIMIFSGGEPLMRDDIFTLVA 68

Query: 106 ALNKRGFEIAVETNGTI-------------EPPQGIDWICVSPKAGCDLK 142
              +RG      TNGT+                 GI    V PK+  D +
Sbjct: 69  RARERGLRPVFGTNGTLITGETARRLKEAGAAVMGISLDSVDPKSHDDFR 118


>gi|290955780|ref|YP_003486962.1| hypothetical protein SCAB_12261 [Streptomyces scabiei 87.22]
 gi|260645306|emb|CBG68392.1| putative hypothetical protein [Streptomyces scabiei 87.22]
          Length = 417

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 48/135 (35%), Gaps = 19/135 (14%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         SA   + D   +            +++A  I E     +      VL 
Sbjct: 25  CNLDCDYCYVYHSADTSWRDKPRLMDAAV------AERVAGRIAEHATAHDLPDVGIVLH 78

Query: 92  GGEPLL---QVDVPLI----QALNKRGFEIAV--ETNGTIEPPQGIDWI---CVSPKAGC 139
           GGEPLL   +    L+    + L K G  +    +TNG +  P  +D +    V      
Sbjct: 79  GGEPLLLGARRLEELLGILGRCLAKAGVPVRFSAQTNGVLLTPDILDVLLRHRVDVSVSL 138

Query: 140 DLKIKGGQELKLVFP 154
           D   + G +   VFP
Sbjct: 139 DG-TRAGHDRHRVFP 152


>gi|239815326|ref|YP_002944236.1| molybdenum cofactor biosynthesis protein A [Variovorax paradoxus
           S110]
 gi|239801903|gb|ACS18970.1| molybdenum cofactor biosynthesis protein A [Variovorax paradoxus
           S110]
          Length = 383

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 25/145 (17%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +  +      +    ++     +      R   LTGGE
Sbjct: 51  DRCNFRCSYCMPKDVFDKDYQYLPHS-----ALLSFEEMTRLARLFAAHGVRKIRLTGGE 105

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTI-------EPPQGIDWICVSPKAGCD 140
           PLL+ ++  LI  L++          + + TNG++           G+  + VS  +  D
Sbjct: 106 PLLRKNIEALIAQLSEIRTPGGEPLALTLTTNGSLLQRKAAALAAAGLQRVTVSLDSLDD 165

Query: 141 LKIKGGQELKLVFPQVNVSPENYIG 165
              +   ++      V    E  + 
Sbjct: 166 AVFRHMNDVDFPVADVLAGIEAALA 190


>gi|189501278|ref|YP_001960748.1| molybdenum cofactor biosynthesis protein A [Chlorobium
           phaeobacteroides BS1]
 gi|189496719|gb|ACE05267.1| molybdenum cofactor biosynthesis protein A [Chlorobium
           phaeobacteroides BS1]
          Length = 332

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 24/113 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C  +  GI      +    ++  LIE   +  E   R    T
Sbjct: 30  CNL-----------RCFYCKRESPGIPTPDDQQMKTGEIKTLIE---LLAEMGIRKIRFT 75

Query: 92  GGEPLLQVDV-PLIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134
           GGEPLL+ D+  L+Q      G E +++ TNGT+           G+D I +S
Sbjct: 76  GGEPLLRPDIVDLVQIAKSTTGIETVSLTTNGTLLEKHFEALVSAGLDGINLS 128


>gi|194443202|ref|YP_002043379.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194401865|gb|ACF62087.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
          Length = 292

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS--------------AQCRF 49
           IF     +L  G+G       VF  F GC        +  S               +C  
Sbjct: 24  IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLRCTP 78

Query: 50  C--DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
           C  D D       +  G    +D+L   + +  I     G    L+GGE L+Q       
Sbjct: 79  CLRDADECPSGAFERIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 138

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L + G   A+ET G
Sbjct: 139 LQRLRRWGVPCAIETAG 155


>gi|161617257|ref|YP_001591222.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161366621|gb|ABX70389.1| hypothetical protein SPAB_05098 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 279

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS--------------AQCRF 49
           IF     +L  G+G       VF  F GC        +  S               +C  
Sbjct: 11  IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLRCTP 65

Query: 50  C--DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
           C  D D       +  G    +D+L   + +  I     G    L+GGE L+Q       
Sbjct: 66  CLRDADECPSGAFERIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 125

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L + G   A+ET G
Sbjct: 126 LQRLRRWGVPCAIETAG 142


>gi|116754428|ref|YP_843546.1| radical SAM domain-containing protein [Methanosaeta thermophila PT]
 gi|116665879|gb|ABK14906.1| Radical SAM domain protein [Methanosaeta thermophila PT]
          Length = 342

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 17/99 (17%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
           +C  C   ++          ++D+   LI+E     + +    +LTGGEPL+  +     
Sbjct: 2   RCDHC---YIDANDEMTDELSLDEGIRLIDEL---ADLKIPMLILTGGEPLMSRNF-WAY 54

Query: 106 ALN--KRGFEIAVETNGTIEPPQ--------GIDWICVS 134
           A +  ++    A+ TNGT+  P+        GI ++ VS
Sbjct: 55  AFHAKEKNLRCAISTNGTLITPEVAMLLREAGIRYVGVS 93


>gi|111222128|ref|YP_712922.1| putative coenzyme PQQ synthesis protein [Frankia alni ACN14a]
 gi|111149660|emb|CAJ61353.1| putative Coenzyme PQQ synthesis protein [Frankia alni ACN14a]
          Length = 369

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 18/99 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C   FV     +G     +++ D +       E       LT
Sbjct: 37  CNL-----------HCAHC---FVS-ATRQGQTMPYERIVDTV--IPRLAECRVERVTLT 79

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGID 129
           GGEP L +  + ++ A    G  + + TN T      ID
Sbjct: 80  GGEPTLHLRFLDVVTAFRSAGMAVGICTNATTLTAAQID 118


>gi|119719510|ref|YP_920005.1| putative molybdenum cofactor biosynthesis protein A [Thermofilum
           pendens Hrk 5]
 gi|119524630|gb|ABL78002.1| putative molybdenum cofactor biosynthesis protein A [Thermofilum
           pendens Hrk 5]
          Length = 348

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 16/99 (16%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LI 104
            C FC       +       +  ++ ++       G    +   LTGGEPLL+ D+  ++
Sbjct: 32  NCVFC---HGEGEPPNNALLSASEIVEVASVAHSLGVGTFK---LTGGEPLLRKDLERIV 85

Query: 105 QALNK--RGFEIAVETNGTI-------EPPQGIDWICVS 134
             L    RG E+++ TNG             G+D + VS
Sbjct: 86  AGLKSFGRGVEVSLTTNGFFLEKRVPSLVEAGLDRVNVS 124


>gi|294013183|ref|YP_003546643.1| putative radical SAM [Sphingobium japonicum UT26S]
 gi|292676513|dbj|BAI98031.1| putative radical SAM [Sphingobium japonicum UT26S]
          Length = 382

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 35/111 (31%), Gaps = 21/111 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWI---TGEKEGRY 87
           CNL            C +C    +G    +   +   D + D +  +       +     
Sbjct: 22  CNL-----------DCSYCYVYHMGDNAWRDQPKQMSDAVLDAVARRLADQYALQAVPFS 70

Query: 88  CVLTGGEPLL---QVDVPLIQALNK---RGFEIAVETNGTIEPPQGIDWIC 132
            VL GGEPLL            L         I ++TNG +     ID + 
Sbjct: 71  VVLHGGEPLLLGVAKLERFCAKLRDALPHPCGIHIQTNGALLNEPIIDVLV 121


>gi|14590694|ref|NP_142762.1| nitrite reductase [Pyrococcus horikoshii OT3]
 gi|3257237|dbj|BAA29920.1| 552aa long hypothetical nitrite reductase [Pyrococcus horikoshii
           OT3]
          Length = 552

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 20/123 (16%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104
           +C+ C   +           ++++   L+++    G        L+GGEP +    + ++
Sbjct: 162 RCKHC---YQRADKPLPSELSLEEKLMLVDQLDRAGVAA---VALSGGEPTIHPHFLRIV 215

Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENY 163
           + L+ RG   +V TNG         W   + K   +  +K G  LK V   V+   PE +
Sbjct: 216 KELSSRGIHTSVATNG---------W-TFADKEKLEEAVKAG--LKYVEISVDSAKPEKH 263

Query: 164 IGF 166
             F
Sbjct: 264 DEF 266


>gi|148251870|ref|YP_001236455.1| hypothetical protein BBta_0254 [Bradyrhizobium sp. BTAi1]
 gi|146404043|gb|ABQ32549.1| hypothetical protein BBta_0254 [Bradyrhizobium sp. BTAi1]
          Length = 471

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 61/181 (33%), Gaps = 22/181 (12%)

Query: 31  GCNLWSGREQDRLSAQCR-----------FCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G   D     C             C   F      +   +      + + +  +
Sbjct: 85  GCPYDCGLCPDHEQHSCLALIEITDHCNLTCPVCFA-ESSPQRSHFTPLATVERMLDALV 143

Query: 80  TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKA 137
             E E     ++GGEP L  D   ++ A+  R    + + TNG +   +  D++    K 
Sbjct: 144 KSEGEPDLVQISGGEPTLHPDFFDILAAVRARPIRHVMINTNG-LRIAREPDFVA---KL 199

Query: 138 GCDLKIKGGQELKLVFPQVNVS-PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196
               + K G E+ L F  ++ +   N  G D  R   Q ++    +  +   ++   +  
Sbjct: 200 A---ETKRGLEVYLQFDSLSRAGLTNIRGADLRRIRQQALENLEHQGISTTLVATIKRGV 256

Query: 197 K 197
            
Sbjct: 257 N 257


>gi|304395876|ref|ZP_07377758.1| coenzyme PQQ biosynthesis protein E [Pantoea sp. aB]
 gi|304356245|gb|EFM20610.1| coenzyme PQQ biosynthesis protein E [Pantoea sp. aB]
          Length = 380

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF   +         +Q  ++  +    G  +  +  
Sbjct: 11  PLWLLAELTYRCPLQCPYCSNPLDFAQQEKE----LTTEQWIEVFRQARAMGSVQLGF-- 64

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +GGEPL++ D+P LI+A    GF   + T+G
Sbjct: 65  -SGGEPLVRKDLPELIKAARDLGFYTNLITSG 95


>gi|330862884|emb|CBX73021.1| pyruvate formate-lyase 1-activating enzyme [Yersinia enterocolitica
           W22703]
          Length = 176

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G    V++L           
Sbjct: 25  VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
              G     +GGE +LQ +      +A ++ G    ++TNG
Sbjct: 68  NASGGGVTASGGEAILQAEFVRDWFRACHEEGIHTCLDTNG 108


>gi|325967847|ref|YP_004244039.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28]
 gi|323707050|gb|ADY00537.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 385

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 31/144 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR C   ++          ++D    ++++    G    +Y  L 
Sbjct: 52  CNL-----------ECRHC---YLLAGKPLSNELSIDDWLLILDKLRDLG---AKYVYLL 94

Query: 92  GGEPLLQVDVPLIQAL---NKRGFEIAVETNGTIE--------PPQGIDWICVS---PKA 137
           GGEP+L +   L++ +      G  I++ TNGT+            G+D + VS   P  
Sbjct: 95  GGEPMLLIRRGLLKIISHAKDLGLYISMSTNGTLVNRESALQLKRAGLDQVQVSLDGPNP 154

Query: 138 GCDLKIKGGQELKLVFPQVNVSPE 161
             +  I+G          VNV  E
Sbjct: 155 AVNDVIRGIGSFDKAVRAVNVFRE 178


>gi|303257844|ref|ZP_07343854.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderiales bacterium 1_1_47]
 gi|331000298|ref|ZP_08323981.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Parasutterella excrementihominis YIT 11859]
 gi|302859447|gb|EFL82528.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Burkholderiales bacterium 1_1_47]
 gi|329572330|gb|EGG53988.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Parasutterella excrementihominis YIT 11859]
          Length = 255

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 29/131 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           VF    GC             +C +C   D    +  +G  Y   +  D   ++      
Sbjct: 41  VFI--KGCP-----------WKCVYCQNEDLQSREMNEGDGYVSWEYIDHFLDRRKGLID 87

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKA 137
                V +GGEP +   +P  I+ + ++G++I + T G            +DW+      
Sbjct: 88  G---VVFSGGEPCVDPALPDAIKRVKEKGYKIGLHTGGMYPRRLRAILPYLDWV------ 138

Query: 138 GCDLKIKGGQE 148
           G D+K     E
Sbjct: 139 GLDIKAPLSDE 149


>gi|251789946|ref|YP_003004667.1| pyruvate formate lyase-activating enzyme 1 [Dickeya zeae Ech1591]
 gi|247538567|gb|ACT07188.1| pyruvate formate-lyase activating enzyme [Dickeya zeae Ech1591]
          Length = 246

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 58/179 (32%), Gaps = 40/179 (22%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V++L   +          G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKEVVTYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI----EPPQGIDWICVSPKAGC 139
                +GGE +LQ +      +A +++G    ++TNG +         +  +        
Sbjct: 72  GGVTASGGEAILQAEFVRDWFRACHEQGINTCLDTNGFVRRYDPVIDELLDVT------- 124

Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
           DL +   ++L     Q  V   N+   +F R+          + N    I Y    P W
Sbjct: 125 DLVMLDLKQLNDEVHQNLVGVSNHRTLEFARY--------LAKRNQRTWIRYVVV-PDW 174


>gi|269797240|ref|YP_003311140.1| radical SAM protein [Veillonella parvula DSM 2008]
 gi|269093869|gb|ACZ23860.1| Radical SAM domain protein [Veillonella parvula DSM 2008]
          Length = 409

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 14/102 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR +  C  C   +  I+     +     QL  ++++    G +     V++GGEP ++ 
Sbjct: 85  DRCNLSCVGC---YSYIEERNTQKDLTTAQLKHIVDQLVACGVER---LVISGGEPFIRN 138

Query: 100 DVP-LIQALNKRGFEIAVETNGTIEP------PQGIDWICVS 134
           D+  ++  + K    +AV TNGT++          ID + VS
Sbjct: 139 DMADILAHIKKHNISVAVITNGTMDWNRVEKAIPFIDSLSVS 180


>gi|167587143|ref|ZP_02379531.1| molybdenum cofactor biosynthesis protein A [Burkholderia ubonensis
           Bu]
          Length = 369

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 25/142 (17%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           D+ + +C +C      D  +  +  +   R +  QL  +       G ++ R   LTGGE
Sbjct: 43  DQCNFRCTYCMPRESFDAGYAFMPSS--ARLSFAQLTRIARAFVALGVEKIR---LTGGE 97

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+  +  LI++L        +  EIA+ TNG++           G+  + VS  A  D
Sbjct: 98  PLLRRGIETLIESLAALTTLDGKPVEIALTTNGSLLAAKARALRDAGLGRVTVSLDAIDD 157

Query: 141 LKIKGGQELKLVFPQVNVSPEN 162
              +   ++ +   ++    E 
Sbjct: 158 AVFRKMSDVDMPVSRILAGIEA 179


>gi|148243988|ref|YP_001220226.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Acidiphilium cryptum JF-5]
 gi|146400551|gb|ABQ29084.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Acidiphilium cryptum JF-5]
          Length = 235

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 55/144 (38%), Gaps = 50/144 (34%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           GR+A   F R  GC L           +CR+C + D    +GT   R+        +E  
Sbjct: 22  GRLAATFFLR--GCPL-----------RCRYCHNVDLQARRGTSPLRW--------LEAL 60

Query: 78  WITGEKEGRY--CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134
               ++ G     V +GGEP +   +  +I+ +   GFE+A+ T G            VS
Sbjct: 61  TWLDQRRGLLDSVVFSGGEPTMDRCLEQMIRDVRSLGFEVALHTAG------------VS 108

Query: 135 PK-----------AGCDLKIKGGQ 147
           PK            G D+K   G 
Sbjct: 109 PKRLERVLPMLQWVGLDIKAPFGD 132


>gi|23016836|ref|ZP_00056588.1| COG0535: Predicted Fe-S oxidoreductases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 355

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 14/109 (12%)

Query: 38  REQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTGG- 93
           +  +R + +C +C   +       G   +   L   A ++E          +    +GG 
Sbjct: 35  KPTNRCNHKCWYC--AYRTDDLKLGEDMDESDLIPEAKMMEIADDIVAMGVKAVTFSGGG 92

Query: 94  EPLLQVDVP-LIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134
           EPLL   +P +I  L   G  +A  TNG            +   W+ VS
Sbjct: 93  EPLLYKPLPEVIDRLAAGGVRVATLTNGANLKGKVAQSLARHATWVRVS 141


>gi|225017329|ref|ZP_03706521.1| hypothetical protein CLOSTMETH_01255 [Clostridium methylpentosum
           DSM 5476]
 gi|224949946|gb|EEG31155.1| hypothetical protein CLOSTMETH_01255 [Clostridium methylpentosum
           DSM 5476]
          Length = 263

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 26/107 (24%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEE 76
           +F    GC L           +CR+C          + + + G          +A+++ E
Sbjct: 30  IF--LKGCPL-----------RCRWCCNPESQHHQVEEMVVDGKPKTMGRDVTVAEVLSE 76

Query: 77  QWITGEKEGRY---CVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
                    R      L+GGE L Q +    +++A  + G   A+ET
Sbjct: 77  VLKDASYYRRSGGGVTLSGGECLFQPEFAAAILRACQEHGVNTAIET 123


>gi|109898477|ref|YP_661732.1| molybdenum cofactor biosynthesis protein A [Pseudoalteromonas
           atlantica T6c]
 gi|109700758|gb|ABG40678.1| GTP cyclohydrolase subunit MoaA [Pseudoalteromonas atlantica T6c]
          Length = 322

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 38/148 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN                CDTD            +   L ++        +       +T
Sbjct: 21  CNFSCEYCLPDGYQ----CDTDR-----------DFLSLIEITRIAGAFAKLGTSKIRIT 65

Query: 92  GGEPLLQVDVPLIQALNK----RGF-EIAVETNGTIEPPQGID-WI------------CV 133
           GGEP L+ D+P   A+       G  ++A+ TNG  + P  ID W+             +
Sbjct: 66  GGEPSLRKDLP--DAIRACANTPGIKQVAITTNG-YKLPDHIDSWVEAGLTQMNVSIDSL 122

Query: 134 SPKAGCDLKIKGGQELKLVFPQVNVSPE 161
            P+      I G  +L ++   ++ + E
Sbjct: 123 DPRMFAS--ITGHDKLDVILRGIDRAVE 148


>gi|227505189|ref|ZP_03935238.1| pyruvate radical-activating enzyme [Corynebacterium striatum ATCC
           6940]
 gi|227198217|gb|EEI78265.1| pyruvate radical-activating enzyme [Corynebacterium striatum ATCC
           6940]
          Length = 234

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 27/119 (22%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            +GC L           +C +C    + + G   G Y+      L+  +    +      
Sbjct: 42  LNGCPL-----------RCSYCHNPQLQVFGP--GSYSWQDALSLLCSRRGLLDG----V 84

Query: 89  VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE---------PPQGIDWICVSPKA 137
           V +GGEPL    +P  I   +  GF++ + T+G +          P    +WI +  KA
Sbjct: 85  VFSGGEPLSAPGLPQAIAEAHAAGFKVGLHTSGYLPGRLDKLMAHPETRPEWIGIDVKA 143


>gi|255306022|ref|ZP_05350194.1| glycerol dehydratase activator [Clostridium difficile ATCC 43255]
          Length = 300

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 88  CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWICVSPKAGC 139
              +GGEP LQ+D    L+     +G  IA+ET G        +  + ID I V  K+  
Sbjct: 128 ITFSGGEPTLQIDFLRELVDIFYDKGINIAIETCGYFDWNKVNDVFEKIDHIFVDIKSMD 187

Query: 140 D 140
           D
Sbjct: 188 D 188


>gi|301300126|ref|ZP_07206342.1| pyruvate formate-lyase 1-activating enzyme [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300215439|gb|ADJ79852.1| Pyruvate formate-lyase activating enzyme [Lactobacillus salivarius
           CECT 5713]
 gi|300852300|gb|EFK79968.1| pyruvate formate-lyase 1-activating enzyme [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 278

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 39/154 (25%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC++           +C+FC   DT     +   G +   +++ +     + 
Sbjct: 35  IRFVAFMQGCHM-----------RCKFCHNPDT----WKTRVGSQMTTEEVLNK-ALPYR 78

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG---TIEPP------QGI 128
           +   +     L+GGE LLQ+D  + L +   + G    ++T G   T   P      + +
Sbjct: 79  SFWGDKGGITLSGGEILLQIDFALELFKMCKEEGISTCLDTCGQPFTRREPWFSKFNELM 138

Query: 129 DWICVSPKAGCDLKIKGGQELKLV--FPQVNVSP 160
           D+  +      D+K     E K +  FP  N+  
Sbjct: 139 DYTDI---LLVDIKHINSDEHKRLTGFPNDNILD 169


>gi|313117027|ref|YP_004038151.1| predicted Fe-S oxidoreductase [Halogeometricum borinquense DSM
           11551]
 gi|312294979|gb|ADQ69015.1| predicted Fe-S oxidoreductase [Halogeometricum borinquense DSM
           11551]
          Length = 403

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 19/98 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL+               DT+    +  T  G+  +D LAD                + 
Sbjct: 49  CNLYCAHCYAAA-------DTETAPGELSTAEGKRLLDDLAD----------YGVPVVLF 91

Query: 91  TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQG 127
           +GGEPL++ D V L++    RG    + TNGT+  P+ 
Sbjct: 92  SGGEPLVRDDVVELVEYAADRGIRPVLSTNGTLITPEK 129


>gi|218670825|ref|ZP_03520496.1| putative biosynthetic heme protein [Rhizobium etli GR56]
          Length = 172

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 17/118 (14%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C    VG +  KG  +N++ +  LIE+    G    R   ++
Sbjct: 49  CNL-----------GCHHCYIAGVGPKA-KGIDFNLEAIQGLIEQALPNGL---RKVKVS 93

Query: 92  GGEPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
           GGEP++  + + +++ L   G  E+  ETNGT+     I+ +   P     + +    
Sbjct: 94  GGEPMVHKEFMAVMEYLASCGLKELVFETNGTLFDEFTIEQLSRLPNLTVFISLDHFD 151


>gi|146306997|ref|YP_001187462.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           mendocina ymp]
 gi|226704997|sp|A4XTR4|PQQE_PSEMY RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|145575198|gb|ABP84730.1| coenzyme PQQ biosynthesis protein E [Pseudomonas mendocina ymp]
          Length = 384

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 58/172 (33%), Gaps = 16/172 (9%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C       +  +G   +  +  ++  +    G  +  +   +
Sbjct: 18  PLWLLAELTYRCPLQCPYCSNPLDFAK--QGAELSTAEWIEVFRQARELGAAQLGF---S 72

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
           GGEPL+ Q    LI A    G+   + T+G              G+D I +S +A  +  
Sbjct: 73  GGEPLVRQDLAELIAAARGLGYYTNLITSGIGLTEARIAEFADAGLDHIQISFQAADEEV 132

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
                  K  F Q  ++    +        L  +      +N    I  C +
Sbjct: 133 NNLLAGSKKAFAQ-KLAMARAVKAHGYPMVLNFVTHRHNIDNIERIIELCLE 183


>gi|91201993|emb|CAJ75053.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 303

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 20/100 (20%)

Query: 24  AVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
            +F    S CNL            C  C   +  I   K      + L +++ +    G 
Sbjct: 11  TIFISLLSDCNL-----------ACDHC---YARIYKEK-KILPGEMLENILLQAESLGS 55

Query: 83  KEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                  LTGGEP+L  ++  I + +K  F I + TNGT+
Sbjct: 56  FIFM---LTGGEPMLYPNLMEILSGHKNSFFILI-TNGTM 91


>gi|16767380|ref|NP_462995.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167551385|ref|ZP_02345140.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|167991694|ref|ZP_02572793.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168262975|ref|ZP_02684948.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|197265842|ref|ZP_03165916.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|198242232|ref|YP_002218044.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|207859305|ref|YP_002245956.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|16422682|gb|AAL22954.1| putative pyruvate formate lyase activating enzyme 2 [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|197244097|gb|EDY26717.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197936748|gb|ACH74081.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205323778|gb|EDZ11617.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205329972|gb|EDZ16736.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205348294|gb|EDZ34925.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206711108|emb|CAR35482.1| pyruvate formate-lyase 2 activating enzyme (ec 1.97.1.4)
           (pfl-activating enzyme) [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261249231|emb|CBG27093.1| pyruvate formate-lyase 2 activating enzyme (ec 1.97.1.4)
           (pfl-activating enzyme) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996418|gb|ACY91303.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160622|emb|CBW20153.1| pyruvate formate-lyase 2 activating enzyme (ec 1.97.1.4)
           (pfl-activating enzyme) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915232|dbj|BAJ39206.1| pyruvate formate lyase 2-activating enzyme [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321225408|gb|EFX50466.1| Pyruvate formate-lyase activating enzyme [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323132461|gb|ADX19891.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326625836|gb|EGE32181.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 292

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS--------------AQCRF 49
           IF     +L  G+G       VF  F GC        +  S               +C  
Sbjct: 24  IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLRCTP 78

Query: 50  C--DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
           C  D D       +  G    +D+L   + +  I     G    L+GGE L+Q       
Sbjct: 79  CLRDADECPSGAFERIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 138

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L + G   A+ET G
Sbjct: 139 LQRLRRWGVPCAIETAG 155


>gi|323483059|ref|ZP_08088452.1| glycyl-radical enzyme activating protein family [Clostridium
           symbiosum WAL-14163]
 gi|323691495|ref|ZP_08105766.1| glycyl-radical enzyme activating protein family [Clostridium
           symbiosum WAL-14673]
 gi|323403599|gb|EGA95904.1| glycyl-radical enzyme activating protein family [Clostridium
           symbiosum WAL-14163]
 gi|323504468|gb|EGB20259.1| glycyl-radical enzyme activating protein family [Clostridium
           symbiosum WAL-14673]
          Length = 297

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK----GGRYNVDQLADLIEEQWITGEKEG 85
           +GC  +        +  C  C +      G      G    +D++ + + +     ++  
Sbjct: 66  AGCLNFENNNLVFSADNCTGCKSCITQCPGKALTFVGNMMELDEVMEEVLKDMDFYQESK 125

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
               L+GGE L+Q D    L++   + G   A+ET
Sbjct: 126 GGVTLSGGEVLVQPDFAAALLKKCKENGIHTALET 160


>gi|313894936|ref|ZP_07828495.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320530456|ref|ZP_08031514.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Selenomonas artemidis F0399]
 gi|312976389|gb|EFR41845.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320137289|gb|EFW29213.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Selenomonas artemidis F0399]
          Length = 173

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 24/102 (23%)

Query: 15  GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI 74
           GEG    R+ VF    GC             +C  C           G    V  +   +
Sbjct: 22  GEGI---RLTVF--TQGCP-----------RRCPGCHNPETQ-PLVGGRTTTVGAVVAEL 64

Query: 75  EEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEI 114
           +E  +          L+GGEP LQ    +PL +A + RG ++
Sbjct: 65  DENPLLTG-----LTLSGGEPFLQPGALLPLARAAHARGLDV 101


>gi|320530823|ref|ZP_08031861.1| radical SAM domain protein [Selenomonas artemidis F0399]
 gi|320136909|gb|EFW28853.1| radical SAM domain protein [Selenomonas artemidis F0399]
          Length = 396

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +CR C   ++   G K  G    ++    I+      +      + 
Sbjct: 47  CNL-----------RCRHC---YMESDGQKYAGELTTEEAKRFID---GLADFRVPVLLF 89

Query: 91  TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           +GGEPL++ D   L +    RG    + TNGT+
Sbjct: 90  SGGEPLIRPDFFELAEYARDRGVRPTLSTNGTL 122


>gi|317968309|ref|ZP_07969699.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp.
           CB0205]
          Length = 342

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 39/116 (33%), Gaps = 36/116 (31%)

Query: 27  CRF---SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            R    + CNL            C +C             R   +Q   +IE     G  
Sbjct: 17  LRLSLTARCNL-----------ACPYC----QPDGEEAPDRLTTEQRLRVIEAACSLGVS 61

Query: 84  EGRYCVLTGGEPLLQVDVPLIQALNKRGF-------------EIAVETNGTIEPPQ 126
             R   LTGGEPLL  D+   + L   G              +IA+ TNG +  P+
Sbjct: 62  SLR---LTGGEPLLTPDLE--ELLEAIGLARRHTNSPLRELSDIALTTNGLLLSPE 112


>gi|302330040|gb|ADL20234.1| Anaerobic ribonucleoside-triphosphate reductase activating protein
           [Corynebacterium pseudotuberculosis 1002]
 gi|308275721|gb|ADO25620.1| Anaerobic ribonucleoside-triphosphate reductase activating protein
           [Corynebacterium pseudotuberculosis I19]
          Length = 228

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 29/126 (23%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
             A F    GC L           +C +C      +Q    G +++ +   L+  +    
Sbjct: 36  VAAAF--TQGCPL-----------RCVYC--HNSQLQAFTPGAHSLAEFLSLLSSRHGLI 80

Query: 82  EKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG---------TIEPPQGIDWI 131
           +      V++GGEP     +   I A++  GF + + T G           +P    DW+
Sbjct: 81  DAA----VISGGEPTAVRGLGDAIAAIHNIGFPVGIHTCGYAPSRIAELLRDPATTPDWV 136

Query: 132 CVSPKA 137
            +  KA
Sbjct: 137 GLDIKA 142


>gi|254974647|ref|ZP_05271119.1| glycerol dehydratase activator [Clostridium difficile QCD-66c26]
 gi|255092037|ref|ZP_05321515.1| glycerol dehydratase activator [Clostridium difficile CIP 107932]
 gi|255313773|ref|ZP_05355356.1| glycerol dehydratase activator [Clostridium difficile QCD-76w55]
 gi|255516455|ref|ZP_05384131.1| glycerol dehydratase activator [Clostridium difficile QCD-97b34]
 gi|255649553|ref|ZP_05396455.1| glycerol dehydratase activator [Clostridium difficile QCD-37x79]
 gi|260682720|ref|YP_003214005.1| glycerol dehydratase activator [Clostridium difficile CD196]
 gi|260686318|ref|YP_003217451.1| glycerol dehydratase activator [Clostridium difficile R20291]
 gi|306519680|ref|ZP_07406027.1| glycerol dehydratase activator [Clostridium difficile QCD-32g58]
 gi|260208883|emb|CBA61850.1| glycerol dehydratase activator [Clostridium difficile CD196]
 gi|260212334|emb|CBE03127.1| glycerol dehydratase activator [Clostridium difficile R20291]
          Length = 300

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 88  CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWICVSPKAGC 139
              +GGEP LQ+D    L+     +G  IA+ET G        +  + ID I V  K+  
Sbjct: 128 ITFSGGEPTLQIDFLRELVDIFYDKGINIAIETCGYFDWNKVNDVFEKIDHIFVDIKSMD 187

Query: 140 D 140
           D
Sbjct: 188 D 188


>gi|116754452|ref|YP_843570.1| molybdenum cofactor biosynthesis protein A [Methanosaeta
           thermophila PT]
 gi|116665903|gb|ABK14930.1| GTP cyclohydrolase subunit MoaA [Methanosaeta thermophila PT]
          Length = 298

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 21/94 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C           GG  + +   +++      G    R   +T
Sbjct: 22  CNL-----------RCIYC----HHEGEVTGGEISREMAVNVVNAASRLG---IRSVKIT 63

Query: 92  GGEPLLQVDV-PLIQALNK--RGFEIAVETNGTI 122
           GGEPL++ D+  +I    +   G EI++ TNG  
Sbjct: 64  GGEPLMRSDLEEMIAGFKEVAPGVEISITTNGVY 97


>gi|300711118|ref|YP_003736932.1| molybdenum cofactor biosynthesis protein A [Halalkalicoccus
           jeotgali B3]
 gi|299124801|gb|ADJ15140.1| molybdenum cofactor biosynthesis protein A [Halalkalicoccus
           jeotgali B3]
          Length = 327

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 23/126 (18%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR +  C +C      DT   G    +    + D +   +E   +  E        TGGE
Sbjct: 21  DRCNFDCVYCHNEGLGDTR--GPMDPQDDEMSADDVVRFLE---VVREFGVEKVKFTGGE 75

Query: 95  PLLQVDVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS-----PKAGCDLK 142
           P+L+ D+  I        E+++ TNGT  P         G+  + VS     PK   ++ 
Sbjct: 76  PMLRDDLEEIIRRTPDEMEVSMTTNGTFLPGRAEGLVEAGLSRVNVSQDALDPKEFAEIT 135

Query: 143 IKGGQE 148
             G  +
Sbjct: 136 KSGAYD 141


>gi|126698713|ref|YP_001087610.1| glycerol dehydratase activator [Clostridium difficile 630]
 gi|255100132|ref|ZP_05329109.1| glycerol dehydratase activator [Clostridium difficile QCD-63q42]
 gi|115250150|emb|CAJ67971.1| Pyruvate formate-lyase 2-activating enzyme [Clostridium difficile]
          Length = 300

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 88  CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWICVSPKAGC 139
              +GGEP LQ+D    L+     +G  IA+ET G        +  + ID I V  K+  
Sbjct: 128 ITFSGGEPTLQIDFLRELVDIFYDKGINIAIETCGYFDWNKVNDVFEKIDHIFVDIKSMD 187

Query: 140 D 140
           D
Sbjct: 188 D 188


>gi|62182575|ref|YP_218992.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62130208|gb|AAX67911.1| putative pyruvate formate lyase activating enzyme 2 [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322717076|gb|EFZ08647.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 292

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS--------------AQCRF 49
           IF     +L  G+G       VF  F GC        +  S               +C  
Sbjct: 24  IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLRCTP 78

Query: 50  C--DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
           C  D D       +  G    +D+L   + +  I     G    L+GGE L+Q       
Sbjct: 79  CLRDADECPSGAFERIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 138

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L + G   A+ET G
Sbjct: 139 LQRLRRWGVPCAIETAG 155


>gi|330503846|ref|YP_004380715.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           mendocina NK-01]
 gi|328918132|gb|AEB58963.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           mendocina NK-01]
          Length = 384

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 57/172 (33%), Gaps = 16/172 (9%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C       Q  +G   +  +  ++  +    G  +  +   +
Sbjct: 18  PLWLLAELTYRCPLQCPYCSNPLDFAQ--QGAELSTAEWIEVFRQARELGAAQLGF---S 72

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
           GGEPL  Q    LI A    G+   + T+G              G+D I +S +A  +  
Sbjct: 73  GGEPLARQDLAELIAAARGLGYYTNLITSGIGLTEARIAEFAEAGLDHIQISFQAADEEV 132

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
                  K  F Q  ++    +        L  +      +N    I  C +
Sbjct: 133 NNLLAGSKKAFAQ-KLAMARAVKAHGYPMVLNFVTHRHNIDNIERIIELCLE 183


>gi|227892250|ref|ZP_04010055.1| pyruvate formate-lyase activating enzyme [Lactobacillus salivarius
           ATCC 11741]
 gi|227865972|gb|EEJ73393.1| pyruvate formate-lyase activating enzyme [Lactobacillus salivarius
           ATCC 11741]
          Length = 278

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 39/154 (25%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC++           +C+FC   DT     +   G +   +++ +     + 
Sbjct: 35  IRFVVFMQGCHM-----------RCKFCHNPDT----WKTRVGSQMTTEEVLNK-ALPYR 78

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG---TIEPP------QGI 128
           +   +     L+GGE LLQ+D  + L +   + G    ++T G   T   P      + +
Sbjct: 79  SFWGDKGGITLSGGEILLQIDFALELFKMCKEEGISTCLDTCGQPFTRREPWFSKFNELM 138

Query: 129 DWICVSPKAGCDLKIKGGQELKLV--FPQVNVSP 160
           D+  +      D+K     E K +  FP  N+  
Sbjct: 139 DYTDI---LLVDIKHINSDEHKRLTGFPNDNILD 169


>gi|168467465|ref|ZP_02701302.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|195630238|gb|EDX48878.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
          Length = 292

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS--------------AQCRF 49
           IF     +L  G+G       VF  F GC        +  S               +C  
Sbjct: 24  IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLRCTP 78

Query: 50  C--DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
           C  D D       +  G    +D+L   + +  I     G    L+GGE L+Q       
Sbjct: 79  CLRDADECPSGAFERIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 138

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L + G   A+ET G
Sbjct: 139 LQRLRRWGVPCAIETAG 155


>gi|320536805|ref|ZP_08036802.1| putative anaerobic ribonucleoside-triphosphate reductase activating
           protein [Treponema phagedenis F0421]
 gi|320146341|gb|EFW37960.1| putative anaerobic ribonucleoside-triphosphate reductase activating
           protein [Treponema phagedenis F0421]
          Length = 239

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 10/102 (9%)

Query: 23  VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
            AVF    GCN+      +   A    C    V        +Y+   L + +        
Sbjct: 9   AAVF--LPGCNMRCPYCYNAELA----C--ASVTTGPETNEKYSYVPLEEAVRHLEKRAG 60

Query: 83  KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
                 V +GGE LL   +P LIQ     G  I ++TNG + 
Sbjct: 61  VLTG-VVFSGGEALLSPALPDLIQKARSVGLAIKLDTNGLVP 101


>gi|310641236|ref|YP_003945994.1| molybdenum cofactor biosynthesis protein [Paenibacillus polymyxa
           SC2]
 gi|309246186|gb|ADO55753.1| Molybdenum cofactor biosynthesis protein [Paenibacillus polymyxa
           SC2]
          Length = 292

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 20/97 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC       +      +      +++++     +    +    
Sbjct: 16  CNL-----------ACSFCPQTQRVKKFIDPEVFR-----NVLDQVKPHTDYIYLHVK-- 57

Query: 92  GGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQG 127
            GEPLL   + L+ ++ +++G ++ + TNGT+ P  G
Sbjct: 58  -GEPLLHPKIDLLLESAHEKGLKVNITTNGTLLPKTG 93


>gi|283780120|ref|YP_003370875.1| molybdenum cofactor biosynthesis protein A [Pirellula staleyi DSM
           6068]
 gi|283438573|gb|ADB17015.1| molybdenum cofactor biosynthesis protein A [Pirellula staleyi DSM
           6068]
          Length = 333

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           DR + +C +C  DT    +   +      +++  L+      G  + R   LTGGEPLL+
Sbjct: 24  DRCNIRCFYCMPDTALRFL--PRSEILTFEEIERLVRILAPLGVSKLR---LTGGEPLLR 78

Query: 99  VDVP-LIQALNK-RGF-EIAVETNG 120
            D+  L++ L+   G  E+A+ TNG
Sbjct: 79  ADLAGLVRRLSAIEGVAEVAMTTNG 103


>gi|229102763|ref|ZP_04233462.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock3-28]
 gi|228680695|gb|EEL34873.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock3-28]
          Length = 337

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 14/89 (15%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C       +D+  +Q         D++  L       G  + R   LTGGE
Sbjct: 22  DRCNFRCTYCMPAEVFGSDYAFLQEEF--LLTFDEIERLARLFISMGVNKIR---LTGGE 76

Query: 95  PLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           PLL+ D+P LI  L K  G   I + TNG
Sbjct: 77  PLLRKDLPKLIARLAKLEGLTDIGLTTNG 105


>gi|171315895|ref|ZP_02905125.1| coenzyme PQQ biosynthesis protein E [Burkholderia ambifaria MEX-5]
 gi|171098991|gb|EDT43779.1| coenzyme PQQ biosynthesis protein E [Burkholderia ambifaria MEX-5]
          Length = 374

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 9/91 (9%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
            LW   E   R    C FC   +  +   T G   + D    +I +    G  +      
Sbjct: 13  PLWLLAELTYRCPLHCAFC---YNPVDFATHGAELDTDAWRTVIGDARALGAAQ---IGF 66

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           +GGEPL + D+  L+Q     GF   + T+G
Sbjct: 67  SGGEPLQRDDLEVLVQHARSLGFYTNLITSG 97


>gi|168185707|ref|ZP_02620342.1| pyruvate formate-lyase 2-activating enzyme [Clostridium botulinum C
           str. Eklund]
 gi|169296263|gb|EDS78396.1| pyruvate formate-lyase 2-activating enzyme [Clostridium botulinum C
           str. Eklund]
          Length = 304

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           G   +VD+  + +++  +   K G    L+GGE LLQ +  + L++     G+  A+ET
Sbjct: 106 GESVSVDETIEKLKKDSVYYRKSGGGVTLSGGEALLQPEFAIELLKRCKALGWHTAIET 164


>gi|218779575|ref|YP_002430893.1| glycyl-radical enzyme activating protein family [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760959|gb|ACL03425.1| Alkylsuccinate synthase (I) glycyl radical activating enzyme
           (AssD1) [Desulfatibacillum alkenivorans AK-01]
          Length = 320

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119
           G    V ++ D +E      +  G    L+GGEP    D    L+     RG    ++TN
Sbjct: 114 GKLLTVKEILDEVESDLPFYKNSGGGMTLSGGEPTAHPDFAEKLLAGAKARGLHTCLDTN 173

Query: 120 G 120
           G
Sbjct: 174 G 174


>gi|11499588|ref|NP_070830.1| molybdenum cofactor biosynthesis protein A [Archaeoglobus fulgidus
           DSM 4304]
 gi|6685645|sp|O28273|MOAA_ARCFU RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|2648531|gb|AAB89248.1| molybdenum cofactor biosynthesis protein (moaA) [Archaeoglobus
           fulgidus DSM 4304]
          Length = 296

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 17/71 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C       +   G   + +++ ++       G ++ +   +T
Sbjct: 21  CNL-----------RCFYC---HKEGESNPGEEISAERIVEIARAFKELGVRKLK---IT 63

Query: 92  GGEPLLQVDVP 102
           GGEPLL+ D+P
Sbjct: 64  GGEPLLRKDLP 74


>gi|323476689|gb|ADX81927.1| Radical SAM domain protein [Sulfolobus islandicus HVE10/4]
          Length = 378

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            + +     + + +C  C   ++            ++   LI+E     E      +++G
Sbjct: 36  PVVTWNLTLKCNLKCLHC---YINSSPEGEDGSTTEEALRLIDEM---AEMRIPLIIMSG 89

Query: 93  GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GEPL++ D   L      +G ++A+ TNGT+
Sbjct: 90  GEPLMRRDFFELASYARIKGIKLALSTNGTL 120


>gi|268324535|emb|CBH38123.1| conserved hypothetical protein, radical SAM superfamily [uncultured
           archaeon]
          Length = 394

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 16/92 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL                D D          +  +D LA++               + T
Sbjct: 51  CNLACTHCYINAGL-----DVDISNELSLAEAKAFIDDLAEM----------RAPLILFT 95

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPL++ D   L     ++G + A+ TNGT+
Sbjct: 96  GGEPLMRKDFWELATYATEKGLKTAISTNGTL 127


>gi|119871742|ref|YP_929749.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Pyrobaculum islandicum DSM 4184]
 gi|119673150|gb|ABL87406.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Pyrobaculum islandicum DSM 4184]
          Length = 239

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 20/107 (18%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
             GCNL      +   A+ + C            G  +V++L   +       +      
Sbjct: 24  LCGCNLRCPFCHNWRIAERQNC------------GELDVERLLGELARAKPYIDYLH--- 68

Query: 89  VLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI--EPPQGIDWI 131
            +TGGEPLLQ      L +   + G   ++ TN T+     + ID +
Sbjct: 69  -VTGGEPLLQAEELRHLFKRAREAGVARSLNTNATLTKALEKVIDEV 114


>gi|302335812|ref|YP_003801019.1| glycyl-radical enzyme activating protein family [Olsenella uli DSM
           7084]
 gi|301319652|gb|ADK68139.1| glycyl-radical enzyme activating protein family [Olsenella uli DSM
           7084]
          Length = 314

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 11/85 (12%)

Query: 45  AQCRFCDTDFVGIQGTKGG------RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
             C  C+T         G          VD L  +++        +G     TGGEPL+Q
Sbjct: 89  KACLECETIECVNSCAAGALKQPVREMTVDGLLGVLDRDRSNWGSDGG-VTFTGGEPLMQ 147

Query: 99  VDVPLIQALN---KRGFEIAVETNG 120
            D  L++ L    K     A+ET+G
Sbjct: 148 SDF-LVEVLKGCRKTWIHTAIETSG 171


>gi|292670532|ref|ZP_06603958.1| molybdenum cofactor biosynthesis protein A [Selenomonas noxia ATCC
           43541]
 gi|292647821|gb|EFF65793.1| molybdenum cofactor biosynthesis protein A [Selenomonas noxia ATCC
           43541]
          Length = 331

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 26/114 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +CR+C    +   G K     +V    +++       E   R   L
Sbjct: 20  CNL-----------RCRYC----MPAHGVKKLAHADVLSYEEILRNVRALAEMGVRKVRL 64

Query: 91  TGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134
           TGGEPL++ D+  L++ L +  G E +AV TNG +           G+D + +S
Sbjct: 65  TGGEPLVRRDITRLVRGLKETPGIETVAVTTNGVLLGTMLDELIDAGLDAVNLS 118


>gi|270261850|ref|ZP_06190122.1| coenzyme PQQ synthesis protein E [Serratia odorifera 4Rx13]
 gi|270043726|gb|EFA16818.1| coenzyme PQQ synthesis protein E [Serratia odorifera 4Rx13]
          Length = 379

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF   +         +Q  D+  +    G  +  +  
Sbjct: 13  PLWLLAELTYRCPLQCPYCSNPLDFAAQE----QELTTEQWIDVFRQARAMGSVQLGF-- 66

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +GGEPL++ D+P LI A    GF   + T+G
Sbjct: 67  -SGGEPLVRKDLPELIAAARDLGFYTNLITSG 97


>gi|291617410|ref|YP_003520152.1| PqqE [Pantoea ananatis LMG 20103]
 gi|291152440|gb|ADD77024.1| PqqE [Pantoea ananatis LMG 20103]
          Length = 380

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF   +       + +Q  D+  +    G  +  +  
Sbjct: 11  PLWLLAELTYRCPLQCPYCSNPLDFAQQEKE----LSTEQWIDVFRQARAMGSVQLGF-- 64

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +GGEPL + D+P LI+A    GF   + T+G
Sbjct: 65  -SGGEPLTRKDLPDLIKAARDLGFYTNLITSG 95


>gi|227120433|gb|ACP19314.1| PqqE [Rahnella aquatilis]
          Length = 396

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 11/101 (10%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF              Q   + EE    G  +     
Sbjct: 30  PLWLLAELTYRCPLQCPYCSNPLDFAKQDKE----LTTAQWIKVFEEAREMGAVQ---IG 82

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGID 129
            +GGEPL++ D+P LI+A    GF   + T+G     + ID
Sbjct: 83  FSGGEPLVRKDLPELIRAARDLGFYTNLITSGIGLTEKKID 123


>gi|55378148|ref|YP_135998.1| heme biosynthesis protein [Haloarcula marismortui ATCC 43049]
 gi|55230873|gb|AAV46292.1| heme biosynthesis protein [Haloarcula marismortui ATCC 43049]
          Length = 411

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL+               DT+    +  T  G+  +D LAD                + 
Sbjct: 49  CNLYCDHCYAAA-------DTEIADGELSTAEGKALLDDLAD----------YGAPVVLF 91

Query: 91  TGGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122
           +GGEPL+ Q    L+   N+ G    + TNGT+
Sbjct: 92  SGGEPLVRQDLEELVAYANEVGVRPVLSTNGTL 124


>gi|325275293|ref|ZP_08141246.1| radical SAM family protein [Pseudomonas sp. TJI-51]
 gi|324099541|gb|EGB97434.1| radical SAM family protein [Pseudomonas sp. TJI-51]
          Length = 445

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 33/122 (27%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL- 90
           CNL            C +C  D     G +  R         ++     G    R   + 
Sbjct: 89  CNL-----------ACAYCYADRGSFGGKQVERMQYATAISAVDRLL-NGADPARPVTIG 136

Query: 91  -TGGEPLLQVDVPLI--------QALNKRGFEI--AVETNGTIEPPQGIDW-------IC 132
             GGEPLL  +  L+        +A  KRG ++  ++ TNGTI     ID        + 
Sbjct: 137 FLGGEPLL--NRELVHNVVEYASRAGVKRGIDVRFSITTNGTILSQADIDLMRTHRFAVT 194

Query: 133 VS 134
           +S
Sbjct: 195 IS 196


>gi|320355186|ref|YP_004196525.1| Radical SAM domain-containing protein [Desulfobulbus propionicus
           DSM 2032]
 gi|320123688|gb|ADW19234.1| Radical SAM domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 351

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 31/138 (22%)

Query: 33  NLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           N        R + +CR+C   DT          G   +++                 +  
Sbjct: 16  NYLILALTTRCNLRCRYCYHGDTP----GRQDMGSATLERAFARAAS-----GSGPLHIQ 66

Query: 90  LTGGEPLLQVDVPLIQALNK------RGFEIAVETNGTIEPPQGIDW---------ICV- 133
           LTGGEP L  D  LI+   +      R + + +++NGT   P+ I+          I + 
Sbjct: 67  LTGGEPCLVPD--LIEEACERARSLSRPYTMGLQSNGTCLTPEVIELCRTFGLQVGISLD 124

Query: 134 -SPKAGCDLKIKGGQELK 150
            SPK    L+ +  + L+
Sbjct: 125 GSPKTQQSLRGQAAETLR 142


>gi|312963443|ref|ZP_07777925.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas
           fluorescens WH6]
 gi|311282249|gb|EFQ60848.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas
           fluorescens WH6]
          Length = 383

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 22  RVAVFCRFSGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           + A+     G  LW   E   R   QC +C          +G   + +Q   +  E    
Sbjct: 11  KPAI-----GLPLWLLAELTYRCPLQCPYCSNPLDF--AEQGKELSTEQWIKVFREAREM 63

Query: 81  GEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           G  +  +   +GGEPL+ Q    LI    K GF   + T+G
Sbjct: 64  GAAQLGF---SGGEPLVRQDLAELIAEARKLGFYTNLITSG 101


>gi|167837373|ref|ZP_02464256.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           thailandensis MSMB43]
          Length = 370

 Score = 43.5 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 23/113 (20%)

Query: 41  DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
           DR + +C +C                     ++++  L       G ++ R   +TGGEP
Sbjct: 45  DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 100

Query: 96  LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           LL+ ++  LI+ L K      R  +I + TNG++           G+  + VS
Sbjct: 101 LLRKNIEFLIERLAKMTTAGGRPLDITLTTNGSLLVRKAKSLRDAGLSRVTVS 153


>gi|322835536|ref|YP_004215562.1| coenzyme PQQ biosynthesis protein E [Rahnella sp. Y9602]
 gi|321170737|gb|ADW76435.1| coenzyme PQQ biosynthesis protein E [Rahnella sp. Y9602]
          Length = 377

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 7/99 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C       +  K       Q   + EE    G  +      +
Sbjct: 11  PLWLLAELTYRCPLQCPYCSNPLDFAKQEK--ELTTAQWIKVFEEAREMGAVQ---IGFS 65

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGID 129
           GGEPL++ D+P LI+A    GF   + T+G     + ID
Sbjct: 66  GGEPLVRKDLPELIRAARDLGFYTNLITSGIGLTEKKID 104


>gi|299142548|ref|ZP_07035679.1| pyruvate formate-lyase 1-activating enzyme [Prevotella oris C735]
 gi|298575983|gb|EFI47858.1| pyruvate formate-lyase 1-activating enzyme [Prevotella oris C735]
          Length = 242

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 34/121 (28%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F ++ G G          RF     GC +           +C FC   DT     +  
Sbjct: 8   ESFGSVDGPG---------IRFLIFLQGCPM-----------RCLFCHNPDT----WKQD 43

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           K      D+L +   E++ +   E     ++GGE LLQ+D  + L +  + R     ++T
Sbjct: 44  KTRPMTADELLNQ-AEKYRSYWGEKGGITVSGGEALLQIDFLIELFEKAHARSINTCLDT 102

Query: 119 N 119
           +
Sbjct: 103 S 103


>gi|167768527|ref|ZP_02440580.1| hypothetical protein CLOSS21_03086 [Clostridium sp. SS2/1]
 gi|167710051|gb|EDS20630.1| hypothetical protein CLOSS21_03086 [Clostridium sp. SS2/1]
 gi|291560491|emb|CBL39291.1| Predicted Fe-S oxidoreductases [butyrate-producing bacterium SSC/2]
          Length = 366

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104
            C  C       +  + GR    +  + I+      +    + +LTGGEPLL      L 
Sbjct: 38  NCDMCYVRLSNAEMEQKGRLRTKE--EWIKLAHQMKDAGTLFLLLTGGEPLLFPGFKELY 95

Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWI 131
             L K G  + + TNGT+   +  D+ 
Sbjct: 96  IELQKMGMILTINTNGTLIDEEWADFF 122


>gi|229581698|ref|YP_002840097.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus
           Y.N.15.51]
 gi|259495871|sp|C3NGB5|MOAA_SULIN RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|228012414|gb|ACP48175.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus
           Y.N.15.51]
          Length = 308

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 15/98 (15%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104
           +C FC      ++G +G  Y +    D++    +    +     LTGGEP L+ D+  ++
Sbjct: 23  ECFFC-----HMEGEEGDNY-ILSKEDILLVAKVAKNFDINSVKLTGGEPTLRRDLVEIV 76

Query: 105 QALNKRGFE-IAVETNGTIEPP-------QGIDWICVS 134
           + L + G+  +++ TNG +           G+D I VS
Sbjct: 77  RGLKQLGYRDVSMTTNGLLLKDLAYKLKLAGLDRINVS 114


>gi|89093841|ref|ZP_01166787.1| hypothetical protein MED92_05064 [Oceanospirillum sp. MED92]
 gi|89081971|gb|EAR61197.1| hypothetical protein MED92_05064 [Oceanospirillum sp. MED92]
          Length = 476

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 41/135 (30%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GCNL            C +C   D D    + + G +  ++     IE       +E R
Sbjct: 110 TGCNL-----------SCSYCYKEDLD----KPSAGKKMGLETAIQSIEMLIAESPQEER 154

Query: 87  Y-CVLTGGEPLLQVDVPLI--------QALNKRGFEI--AVETNGTIEPPQGIDW----- 130
           Y  V  GGEPL   ++ LI        +   + G  +   + TN T+   + +DW     
Sbjct: 155 YNVVFFGGEPL--SNLALIREVVDYSERRFAELGKPVDFTMTTNATLLTEEIVDWLNEHR 212

Query: 131 --ICVS---PKAGCD 140
             I +S   PKA  D
Sbjct: 213 FGISISMDGPKAIHD 227


>gi|327482153|gb|AEA85463.1| radical-activating enzyme [Pseudomonas stutzeri DSM 4166]
          Length = 231

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 11/111 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           +L           +CR+C    + I           ++   +E++    E      V +G
Sbjct: 21  HLACVLFCQGCGWRCRYCHNPQL-IPACGNEERPWSEILAFLEQRVGLLEA----VVFSG 75

Query: 93  GEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKA 137
           GEP LQ  +P  I  +   G+++ + + G            +DW+    KA
Sbjct: 76  GEPTLQTALPEAIAQVRALGYKVGLHSAGIKPKLFAGILPLVDWVGFDVKA 126


>gi|254489978|ref|ZP_05103173.1| molybdenum cofactor biosynthesis protein A [Methylophaga
           thiooxidans DMS010]
 gi|224465063|gb|EEF81317.1| molybdenum cofactor biosynthesis protein A [Methylophaga
           thiooxydans DMS010]
          Length = 335

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 26/166 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C    +  + T   R  +  L +++       E       +TGGEPL++ +
Sbjct: 25  DRCDFRCVYC----MDEEMTFMPREQLLTLEEIVFLMRAFCELGVEKVRITGGEPLIRRN 80

Query: 101 VP-LIQALNKRGFEIAV-E----TNGTIEP-------PQGIDWICV---SPKAGCDLKIK 144
           V  L + + +   + A+ E    TNG+  P         G+D I +   S KA     + 
Sbjct: 81  VDWLFEQIGQLKHDTALNELTLTTNGSQLPKHAEALVKAGVDRINISLDSLKADKFKALT 140

Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQP--MDGPFLEENTNLA 188
              EL+ V   ++ + +      F+R  L    M G   +E  +LA
Sbjct: 141 RTGELEQVLAGIDAAKQA----GFKRIKLNAVIMKGRNEDEIIDLA 182


>gi|206559374|ref|YP_002230135.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           cenocepacia J2315]
 gi|206561224|ref|YP_002231989.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           cenocepacia J2315]
 gi|198035412|emb|CAR51288.1| molybdenum cofactor biosynthesis protein A 2 [Burkholderia
           cenocepacia J2315]
 gi|198037266|emb|CAR53188.1| molybdenum cofactor biosynthesis protein A 1 [Burkholderia
           cenocepacia J2315]
          Length = 370

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 25/114 (21%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +  +       +++ + +   ++    E     +TGGE
Sbjct: 45  DRCNFRCVYCMPRAVFDKDYPFLPHS--ALLTHEEI-ERVARLFVAHGVEK--IRITGGE 99

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           PLL+ ++  LI+ L +      R  ++ + TNG++           G+  + VS
Sbjct: 100 PLLRKNLEFLIERLARLTTHAGRPLDLTLTTNGSLLARKARALKDAGLTRVTVS 153


>gi|297190549|ref|ZP_06907947.1| radical SAM domain-containing protein [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197717862|gb|EDY61770.1| radical SAM domain-containing protein [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 339

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 38  CNLAC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  +++ L  R   + + TN  +   + I+    SP     + I G +E
Sbjct: 80  GGEPLMHPQIDEIVRQLVARRKYVFLCTN-AVLLRKKIEKFTPSPYFAFAVHIDGLRE 136


>gi|162454968|ref|YP_001617335.1| hypothetical protein sce6686 [Sorangium cellulosum 'So ce 56']
 gi|161165550|emb|CAN96855.1| hypothetical protein sce6686 [Sorangium cellulosum 'So ce 56']
          Length = 362

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            +W       R    C +C  D+       G +  V+QL  +++E    G        LT
Sbjct: 34  PIWVDVCVTNRCHLSCEYCYGDYHHRHDDIG-QLKVEQLFAIVDEAAALGTA---VLTLT 89

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           GGEP+L   +  +++    RG  + + T+G
Sbjct: 90  GGEPMLHKSIGRIVERAVSRGISVGMVTSG 119


>gi|153932625|ref|YP_001383439.1| radical SAM domain-containing protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935283|ref|YP_001386986.1| radical SAM domain-containing protein [Clostridium botulinum A str.
           Hall]
 gi|152928669|gb|ABS34169.1| radical SAM domain protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152931197|gb|ABS36696.1| radical SAM domain protein [Clostridium botulinum A str. Hall]
          Length = 297

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 20/92 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC          K    +++    ++++     +    +    
Sbjct: 20  CNL-----------ACDFC-----PETRRKPQFMSIEIFDKILDQIKPYTDYIYFHVK-- 61

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            GEPLL  D+   +    K+GF++ + TNGT+
Sbjct: 62  -GEPLLHPDIDKFLDLSYKKGFKVNITTNGTL 92


>gi|148379057|ref|YP_001253598.1| radical SAM domain protein [Clostridium botulinum A str. ATCC 3502]
 gi|148288541|emb|CAL82621.1| putative cofactor modifying protein [Clostridium botulinum A str.
           ATCC 3502]
          Length = 292

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 20/92 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC          K    +++    ++++     +    +    
Sbjct: 15  CNL-----------ACDFC-----PETRRKPQFMSIEIFDKILDQIKPYTDYIYFHVK-- 56

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            GEPLL  D+   +    K+GF++ + TNGT+
Sbjct: 57  -GEPLLHPDIDKFLDLSYKKGFKVNITTNGTL 87


>gi|170732420|ref|YP_001764367.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           cenocepacia MC0-3]
 gi|254245935|ref|ZP_04939256.1| Radical SAM:Molybdenum cofactor synthesis C [Burkholderia
           cenocepacia PC184]
 gi|124870711|gb|EAY62427.1| Radical SAM:Molybdenum cofactor synthesis C [Burkholderia
           cenocepacia PC184]
 gi|169815662|gb|ACA90245.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           cenocepacia MC0-3]
          Length = 370

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 25/114 (21%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +  +       +++ + +   ++    E     +TGGE
Sbjct: 45  DRCNFRCVYCMPRAVFDKDYPFLPHS--ALLTHEEI-ERVARLFVAHGVEK--IRITGGE 99

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           PLL+ ++  LI+ L +      R  ++ + TNG++           G+  + VS
Sbjct: 100 PLLRKNLEFLIERLARLTTHAGRPLDLTLTTNGSLLARKARALKDAGLTRVTVS 153


>gi|107022186|ref|YP_620513.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           cenocepacia AU 1054]
 gi|116689132|ref|YP_834755.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           cenocepacia HI2424]
 gi|105892375|gb|ABF75540.1| GTP cyclohydrolase subunit MoaA [Burkholderia cenocepacia AU 1054]
 gi|116647221|gb|ABK07862.1| GTP cyclohydrolase subunit MoaA [Burkholderia cenocepacia HI2424]
          Length = 370

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 25/114 (21%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +  +       +++ + +   ++    E     +TGGE
Sbjct: 45  DRCNFRCVYCMPRAVFDKDYPFLPHS--ALLTHEEI-ERVARLFVAHGVEK--IRITGGE 99

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           PLL+ ++  LI+ L +      R  ++ + TNG++           G+  + VS
Sbjct: 100 PLLRKNLEFLIERLARLTTHAGRPLDLTLTTNGSLLARKARALKDAGLTRVTVS 153


>gi|296161447|ref|ZP_06844253.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. Ch1-1]
 gi|295888262|gb|EFG68074.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. Ch1-1]
          Length = 410

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 19/135 (14%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVL 90
            LW   E   R    C FC   +  +  T   R  + +Q   ++ E    G  +  +   
Sbjct: 23  PLWLLAELTYRCPLHCAFC---YNPVDYTDHSRELSTEQWIGVLREARALGAAQLGF--- 76

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
           +GGEPL++ D+  L+    K GF   + T+G          + ++ K   DLK  G   +
Sbjct: 77  SGGEPLVRDDLEVLVGEARKLGFYTNLITSG----------VGLTDKRLGDLKAAGLDHI 126

Query: 150 KLVFPQVNVSPENYI 164
           +L F        +++
Sbjct: 127 QLSFQDSTQELNDFL 141


>gi|239996864|ref|ZP_04717388.1| pyrroloquinoline quinone biosynthesis protein PqqE [Alteromonas
           macleodii ATCC 27126]
          Length = 386

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 20/165 (12%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   +    C +C ++ V ++ T     + +    ++ E    G  +  +   +
Sbjct: 20  PLWLLAEITYQCPLHCPYC-SNPVNMEET-FNELSTEHWERVLREAREVGAVQLGF---S 74

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
           GGEPLL+ D+  L+      GF   + T+G          I ++ K    LK  G   ++
Sbjct: 75  GGEPLLRKDLEHLVAYARALGFYTNLITSG----------IGMTEKRIAKLKEAGLDHIQ 124

Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFL--EENTNLAISYCF 193
           L F   N    + IG +      Q +    L  + N  + +++C 
Sbjct: 125 LSFQAANAEVNDLIG-NKRHSFEQKLKIAKLVKQYNYPMVLNFCI 168


>gi|222100725|ref|YP_002535293.1| AstB/chuR-related protein [Thermotoga neapolitana DSM 4359]
 gi|221573115|gb|ACM23927.1| AstB/chuR-related protein [Thermotoga neapolitana DSM 4359]
          Length = 323

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 67/183 (36%), Gaps = 35/183 (19%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99
            R + +C+ C   +           + +++ +L+ +    G          GGEPLL   
Sbjct: 14  TRCNFRCKHC---YCEAGEPHPNELSFEEIKELMIDLRELGVWALDLV---GGEPLLHPH 67

Query: 100 DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
            + ++    + G  + + TNG++   + +  I    K      + G     +     +  
Sbjct: 68  LLDILAFGREIGQRLMINTNGSLATREMVRKI----KRANPDVLIG-----VSLEGPDPE 118

Query: 160 PENYIG--FDFERFSLQPMDG--PFLEENTNLAISYCFQNPKWR-------LSVQTHKFI 208
             +Y+    +FER     ++G   F+ E   + I        WR       LS+   K +
Sbjct: 119 TNDYVRGNGNFERA----IEGIKNFISEGFQVTILNVINRMNWRKFEDMVKLSL---K-L 170

Query: 209 GIR 211
           G+R
Sbjct: 171 GVR 173


>gi|120556040|ref|YP_960391.1| radical SAM domain-containing protein [Marinobacter aquaeolei VT8]
 gi|120325889|gb|ABM20204.1| Radical SAM domain protein [Marinobacter aquaeolei VT8]
          Length = 404

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 25/112 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         +      D DF        G     ++  ++++    G       +L+
Sbjct: 41  CNLTCKHCYSISA------DIDF-------KGELTTQEVYKVMDDLKAFG---VPVLILS 84

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGI--------DWICVS 134
           GGEPL++ D+  +       GF + + TNGT+     I        D++ +S
Sbjct: 85  GGEPLMRPDIFDISHRAKAMGFYVGLSTNGTLITEDNISKIAEVGYDYVGIS 136


>gi|126465976|ref|YP_001041085.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Staphylothermus marinus F1]
 gi|126014799|gb|ABN70177.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Staphylothermus marinus F1]
          Length = 267

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 39/195 (20%)

Query: 29  FSGCNLWSGREQDR-----LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
             GCNL      +        + CR+ D               +++L + +E   I  + 
Sbjct: 41  LCGCNLKCPFCHNWMLAINHPSTCRYLD---------------INKLIEELESARILIDY 85

Query: 84  EGRYCVLTGGEPLLQ-VDVPLIQALNKR--GFEIAVETNGTIEPPQG-------IDWICV 133
                 +TGGEPL+Q  ++  I +L K   G  I++ TN T+  P         +D +  
Sbjct: 86  LH----VTGGEPLIQYRELEKILSLAKNNIGVNISINTNFTLYKPLKHLIDSGIVDHLAT 141

Query: 134 SPKAGCDLKIKGGQEL-----KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
             K   DL     +E+     KL    + +  E  +  +     ++ ++     +    A
Sbjct: 142 DLKIPYDLLYGHSKEVADTLWKLFIKSLALVSEYNVPLELRIPVMKNINIKIFRKYLAEA 201

Query: 189 ISYCFQNPKWRLSVQ 203
           +    ++  + + +Q
Sbjct: 202 LDKLDKHNNYYVIIQ 216


>gi|134300585|ref|YP_001114081.1| glycyl-radical activating family protein [Desulfotomaculum reducens
           MI-1]
 gi|134053285|gb|ABO51256.1| glycyl-radical enzyme activating protein family [Desulfotomaculum
           reducens MI-1]
          Length = 310

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 39  EQDRLSAQCRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           +      +C  C   TD    +     G    VD++ +L+E+      + G    L+GGE
Sbjct: 89  KITVDRERCTNCGKCTDICPSKALNMYGELKRVDEVIELVEQDSSFYMRSGGGITLSGGE 148

Query: 95  PLLQVDVPL--IQALNKRGFEIAVETNGTIEPPQGIDWI 131
           PL+Q +  L  ++   +R    A+ET G  +  + +   
Sbjct: 149 PLVQAEFALEVLKEAKRRRLNTAIETCGYADWEKAVTVF 187


>gi|306819962|ref|ZP_07453613.1| pyruvate formate-lyase activating enzyme [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551998|gb|EFM39938.1| pyruvate formate-lyase activating enzyme [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 305

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 19/152 (12%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           KG    V+++     +  I   +      L+GGE L+Q +    L +A   +G+  A+ET
Sbjct: 107 KGKTMTVEEVIKEARKDSIQYYRSDGGITLSGGEALVQGEFAKELFKACKAQGWHTAIET 166

Query: 119 NG------TIEPPQGIDWI-----CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD 167
            G        +    +D +      V+PK   +     G + + +     +  E  I   
Sbjct: 167 EGYTNEEVIRDVMPYVDLVMLDIKSVNPKKHVEF---TGVDNETILKNAKIIQE--ITNT 221

Query: 168 FERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199
             R  + P      EE T+  I +    P  +
Sbjct: 222 VIRIPVIPEFNASREEITD-IIKFVKTLPNVK 252


>gi|226945603|ref|YP_002800676.1| molybdenum cofactor biosynthesis protein [Azotobacter vinelandii
           DJ]
 gi|226720530|gb|ACO79701.1| Molybdenum cofactor biosynthesis protein [Azotobacter vinelandii
           DJ]
          Length = 287

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 16/118 (13%)

Query: 90  LTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG---TIEPP----QGIDWICVS---PKA 137
           +TGGEPL+       +  L + GF ++++ TNG   + + P     GI+ I VS     A
Sbjct: 30  ITGGEPLISPLFDGFMAELGRLGFADVSLTTNGQLLSRKLPVLLAAGIERINVSLDTLDA 89

Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
           G   +I  G +L  V   ++ +    +     + ++ P+ G   E+   L + YC   
Sbjct: 90  GALRRIARGGDLAEVLEGIDQALAAGVRV---KINMVPLRGHNREQVLPL-LEYCLAR 143


>gi|229917634|ref|YP_002886280.1| molybdenum cofactor biosynthesis protein A [Exiguobacterium sp.
           AT1b]
 gi|229469063|gb|ACQ70835.1| molybdenum cofactor biosynthesis protein A [Exiguobacterium sp.
           AT1b]
          Length = 335

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 16/107 (14%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D+ + +CR+C  +          R  +    ++     I      +   LTGGEPLL+ +
Sbjct: 21  DKCNFRCRYCMPEEAFRHHQFLKRDELLSFDEIERFVRIIAPHGVKKVRLTGGEPLLRPN 80

Query: 101 V-PLIQALNKRGFEIAVE-----TNGT-------IEPPQGIDWICVS 134
           +  LI+ L        +E     TNG        +    G+D + VS
Sbjct: 81  LDELIRRLRAV---TTIETIGLTTNGVYLERMAKVLKQAGLDRVNVS 124


>gi|146307788|ref|YP_001188253.1| molybdenum cofactor biosynthesis protein A [Pseudomonas mendocina
           ymp]
 gi|166217888|sp|A4XW05|MOAA_PSEMY RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|145575989|gb|ABP85521.1| GTP cyclohydrolase subunit MoaA [Pseudomonas mendocina ymp]
          Length = 331

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 13/87 (14%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F   Q       ++++L  + +     G +  R   +TGGEPL+
Sbjct: 23  DRCDFRCTYCMSEDMQFAPRQ----QILSLEELYAVADAFIGLGVRRIR---ITGGEPLV 75

Query: 98  -QVDVPLIQALNKRGF--EIAVETNGT 121
            +  + L+Q L +R    ++A+ TNG+
Sbjct: 76  RKNLLSLLQRLGERDELDDLAITTNGS 102


>gi|83591400|ref|YP_425152.1| radical SAM family protein [Rhodospirillum rubrum ATCC 11170]
 gi|83574314|gb|ABC20865.1| Radical SAM [Rhodospirillum rubrum ATCC 11170]
          Length = 387

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP 135
              + E       + GGEPLL  D+ P+++ L  R   + + TN  +   + +D    SP
Sbjct: 65  LGASDECGAPIVSIAGGEPLLHRDIVPIVEGLTARKRFVYLCTN-ALLLKKRMDDFKPSP 123

Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
                + + G +E         VS E       E   L
Sbjct: 124 YLTFSIHLDGDRE----HHDKAVSQEGVFDKAVEAIKL 157


>gi|148265581|ref|YP_001232287.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146399081|gb|ABQ27714.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 347

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C            G  +  +  DL+E+    G  +       
Sbjct: 24  CNL-----------RCTHC---LSSSGEPAAGELSTAEALDLVEQVHQAGVFQ---INFG 66

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           GGEP L+ D   ++ A + RG    + TNGT+
Sbjct: 67  GGEPFLRPDFEEILVACHGRGIMTCISTNGTL 98


>gi|172057088|ref|YP_001813548.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Exiguobacterium sibiricum 255-15]
 gi|171989609|gb|ACB60531.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Exiguobacterium sibiricum 255-15]
          Length = 152

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 30/97 (30%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F+GC              C  C   D+         G   +V+Q+ + I++     
Sbjct: 21  VF--FAGCP-----------HHCPGCHNPDS----WAVEGGEDCSVEQVIEQIQQMG--- 60

Query: 82  EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAV 116
                   ++GGEP LQ      L+ AL   G++I +
Sbjct: 61  ---SYRVTISGGEPFLQQQALSELVHAL--TGYDIYL 92


>gi|260893907|ref|YP_003240004.1| Radical SAM domain protein [Ammonifex degensii KC4]
 gi|260866048|gb|ACX53154.1| Radical SAM domain protein [Ammonifex degensii KC4]
          Length = 382

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +CR C   +     G   G    ++    I+      + E    + 
Sbjct: 39  CNL-----------RCRHC---YASATPGPAPGEMTTEEARRFIQ---GLAKTEVPVLLF 81

Query: 91  TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           +GGEPLL+ D   L+      G    + TNGT+
Sbjct: 82  SGGEPLLRPDFFELVNYARSLGLRPVISTNGTL 114


>gi|262044465|ref|ZP_06017524.1| coenzyme PQQ synthesis protein E [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038195|gb|EEW39407.1| coenzyme PQQ synthesis protein E [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 380

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF             +Q  ++  +    G  +  +  
Sbjct: 11  PLWLLAELTYRCPLQCPYCSNPLDFARQDKE----LTTEQWIEVFRQARAMGSVQLGF-- 64

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +GGEPL + D+P LI+A    GF   + T+G
Sbjct: 65  -SGGEPLTRKDLPELIRAARDLGFYTNLITSG 95


>gi|90962847|ref|YP_536762.1| pyruvate formate-lyase activating enzyme [Lactobacillus salivarius
           UCC118]
 gi|90822041|gb|ABE00679.1| Pyruvate formate-lyase activating enzyme [Lactobacillus salivarius
           UCC118]
          Length = 278

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 39/154 (25%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC++           +C+FC   DT     +   G +   +++ +     + 
Sbjct: 35  IRFVAFMQGCHM-----------RCKFCHNPDT----WKTRVGSQMTTEEVLNK-ALPYR 78

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG---TIEPP------QGI 128
           +   +     L+GGE LLQ+D  + L +   + G    ++T G   T   P      + +
Sbjct: 79  SFWGDKGGITLSGGEILLQIDFALELFKMCKEEGISTCLDTCGQPFTRREPWFSKFNELM 138

Query: 129 DWICVSPKAGCDLKIKGGQELKLV--FPQVNVSP 160
           D+  +      D+K     E K +  FP  N+  
Sbjct: 139 DYTDI---LLVDIKHINSDEHKRLTGFPNDNILD 169


>gi|48478258|ref|YP_023964.1| molybdenum cofactor biosynthesis protein A [Picrophilus torridus
           DSM 9790]
 gi|48430906|gb|AAT43771.1| molybdenum cofactor biosynthesis protein A [Picrophilus torridus
           DSM 9790]
          Length = 611

 Score = 43.5 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L +    +R    C +C   F   +       ++DQ+  ++               +TGG
Sbjct: 149 LGNIVVTNRCDLSCWYC--FFYAKENEPIYEPSLDQIRMMLRRMRNEKPVGANAVQITGG 206

Query: 94  EPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWI 131
           EP ++ D + +I+   + G+  + + TN +I      D++
Sbjct: 207 EPTMRDDILEVIKIAREEGYDHVQLNTN-SIREAYDPDFV 245


>gi|327311169|ref|YP_004338066.1| Radical SAM domain-containing protein [Thermoproteus uzoniensis
           768-20]
 gi|326947648|gb|AEA12754.1| Radical SAM domain protein [Thermoproteus uzoniensis 768-20]
          Length = 381

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 15/111 (13%)

Query: 17  GGH-AGRVAVF---CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
           G +  GR + F    R       +     R + +C  C   +V       G     +  D
Sbjct: 20  GRYGVGRPSDFAAPLR----PAVTWNITRRCNLKCLHC---YVDAGPRDPGELTTQEAMD 72

Query: 73  LIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           ++++     E      + +GGEPLL+ D+  +      +G ++ + TNGT+
Sbjct: 73  VVDQM---AEVGVPMVIFSGGEPLLREDLFDVAAYAGSKGIKLVLSTNGTL 120


>gi|317048015|ref|YP_004115663.1| coenzyme PQQ biosynthesis protein E [Pantoea sp. At-9b]
 gi|316949632|gb|ADU69107.1| coenzyme PQQ biosynthesis protein E [Pantoea sp. At-9b]
          Length = 380

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF   +         +Q  ++  +    G  +  +  
Sbjct: 11  PLWLLAELTYRCPLQCPYCSNPLDFAQQEKE----LTTEQWIEVFRQARAMGSVQLGF-- 64

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +GGEPL + D+P LI+A    GF   + T+G
Sbjct: 65  -SGGEPLTRKDLPELIKAARDLGFYTNLITSG 95


>gi|229592978|ref|YP_002875097.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           fluorescens SBW25]
 gi|229364844|emb|CAY52889.1| coenzyme PQQ synthesis protein E [Pseudomonas fluorescens SBW25]
          Length = 376

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 22  RVAVFCRFSGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           + A+     G  LW   E   R   QC +C          +G   + +Q   +  E    
Sbjct: 4   KPAI-----GLPLWLLAELTYRCPLQCPYCSNPLDF--AEQGKELSTEQWIKVFREAREM 56

Query: 81  GEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           G  +  +   +GGEPL+ Q    LI    K GF   + T+G
Sbjct: 57  GAAQLGF---SGGEPLVRQDLAELIAEARKLGFYTNLITSG 94


>gi|219852013|ref|YP_002466445.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
 gi|219546272|gb|ACL16722.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
          Length = 377

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 12/78 (15%)

Query: 45  AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT--GGEPLLQVDV- 101
           ++CR+CD+     +       + D+   +I+E    G        LT  GGEP ++ D+ 
Sbjct: 38  SRCRYCDS----WKNNGESEPDTDEWKKIIDELVNLG-----IVTLTFSGGEPFIRKDLF 88

Query: 102 PLIQALNKRGFEIAVETN 119
            L      RG    V TN
Sbjct: 89  ELASYAKSRGLITMVVTN 106


>gi|197118992|ref|YP_002139419.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
 gi|197088352|gb|ACH39623.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
          Length = 471

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 21/106 (19%)

Query: 31  GCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           GC    G   D              R + QC FC   F           ++++++ L+E 
Sbjct: 76  GCPFDCGLCSDHRQLPCSVLLEVTDRCNLQCAFC---FADAGPKGTEDPSLERISWLLER 132

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
                        L+GGEP L+ D+P +++A  + GF  I V TNG
Sbjct: 133 AMAAAGACSLQ--LSGGEPTLRDDLPEIVEAARRIGFSFIQVNTNG 176


>gi|118444335|ref|YP_877304.1| glycerol dehydratase activator [Clostridium novyi NT]
 gi|118134791|gb|ABK61835.1| glycerol dehydratase activator [Clostridium novyi NT]
          Length = 304

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 37  GREQDRLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
            RE+     +C   C T+ + +    G   +VD+  + +++  I   + G    L+GGE 
Sbjct: 83  DRERCIACGKCVEHCPTEALVM---SGESVSVDETIEKLKKDSIYYRRSGGGVTLSGGEA 139

Query: 96  LLQVD--VPLIQALNKRGFEIAVET 118
           LLQ +  V L++     G+  A+ET
Sbjct: 140 LLQPEFAVELLKRCKALGWHTAIET 164


>gi|78065694|ref|YP_368463.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. 383]
 gi|77966439|gb|ABB07819.1| GTP cyclohydrolase subunit MoaA [Burkholderia sp. 383]
          Length = 370

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 25/114 (21%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +  +       +++ + +   ++    E     +TGGE
Sbjct: 45  DRCNFRCVYCMPRAVFDKDYPFLPHS--ALLTHEEI-ERVARLFVAHGVEK--IRITGGE 99

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           PLL+ ++  LI+ L +      R  ++ + TNG++           G+  + VS
Sbjct: 100 PLLRKNLEFLIERLARLTTHDGRPIDLTLTTNGSLLARKARALKDAGLTRVTVS 153


>gi|327480689|gb|AEA83999.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           stutzeri DSM 4166]
          Length = 384

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C              ++    A+ IE      E        +
Sbjct: 18  PLWLLAELTYRCPLQCPYC-----SNPLDFARSHDELSTAEWIEVFRQAREMGAAQLGFS 72

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q  V LI A    G+   + T+G
Sbjct: 73  GGEPLVRQDLVELIAAARGLGYYTNLITSG 102


>gi|302555535|ref|ZP_07307877.1| radical SAM domain-containing protein [Streptomyces
           viridochromogenes DSM 40736]
 gi|302473153|gb|EFL36246.1| radical SAM domain-containing protein [Streptomyces
           viridochromogenes DSM 40736]
          Length = 340

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 38  CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  +++ L  R   + + TN  +   + +D    SP     + I G +E
Sbjct: 80  GGEPLMHPQIDEIVRQLVARRKYVFLCTN-ALLLRKKMDQFRPSPYFAFAVHIDGLRE 136


>gi|228924202|ref|ZP_04087473.1| Radical SAM domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835420|gb|EEM80790.1| Radical SAM domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 259

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           ++  A  +++     +    +     GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 1   MEDFAKRLDQIKPHTDYIYLHVK---GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 54


>gi|228918070|ref|ZP_04081598.1| Radical SAM domain protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228930464|ref|ZP_04093464.1| Radical SAM domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229159018|ref|ZP_04287074.1| Radical SAM domain protein [Bacillus cereus ATCC 4342]
 gi|229187687|ref|ZP_04314823.1| Radical SAM domain protein [Bacillus cereus BGSC 6E1]
 gi|228595755|gb|EEK53439.1| Radical SAM domain protein [Bacillus cereus BGSC 6E1]
 gi|228624437|gb|EEK81208.1| Radical SAM domain protein [Bacillus cereus ATCC 4342]
 gi|228829183|gb|EEM74820.1| Radical SAM domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228841550|gb|EEM86666.1| Radical SAM domain protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 259

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           ++  A  +++     +    +     GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 1   MEDFAKRLDQIKPHTDYIYLHVK---GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 54


>gi|182417509|ref|ZP_02948836.1| glycerol dehydratase activator [Clostridium butyricum 5521]
 gi|237665695|ref|ZP_04525683.1| glycerol dehydratase activator [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|158427703|gb|ABW38374.1| glycerol dehydratase activator [Clostridium sp. IBUN 13A]
 gi|161087403|gb|ABX56861.1| glycerol dehydratase activator [Clostridium sp. IBUN 158B]
 gi|161349953|gb|ABX65444.1| glycerol dehydratase activator [Clostridium butyricum]
 gi|182378678|gb|EDT76205.1| glycerol dehydratase activator [Clostridium butyricum 5521]
 gi|193200834|gb|ACF15539.1| glycerol dehydratase activator [Clostridium sp. IBUN 22A]
 gi|237658642|gb|EEP56194.1| glycerol dehydratase activator [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 304

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 39  EQDRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           E     ++C  C    D    G   T+G  Y+V+ +   +++  +   +      L+GGE
Sbjct: 78  EYRIDKSKCTECTKCVDNCLSGALVTEGRNYSVEDVIKELKKDSVQYRRSNGGITLSGGE 137

Query: 95  PLLQVD--VPLIQALNKRGFEIAVET 118
            LLQ D  V L++     G+  A+ET
Sbjct: 138 VLLQPDFAVELLKECKSYGWHTAIET 163


>gi|117620324|ref|YP_857359.1| pyruvate formate-lyase 2-activating enzyme [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561731|gb|ABK38679.1| pyruvate formate-lyase 2-activating enzyme [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 298

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118
           G   ++D L   I       E+ G    L+GGEP +Q +    L+      G   AVE+
Sbjct: 100 GREESLDTLMATILRDRPFFERSGGGVTLSGGEPFMQPEFAANLLARCKAEGLHTAVES 158


>gi|309776578|ref|ZP_07671558.1| putative pyruvate formate-lyase-activating enzyme
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915679|gb|EFP61439.1| putative pyruvate formate-lyase-activating enzyme
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 304

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 52/154 (33%), Gaps = 53/154 (34%)

Query: 15  GEGGHAGRVAVFCRFSGCNLWSGREQDRLS--------------AQCRFC---------- 50
           G+G       VF  F GC+L      +  S              + C +C          
Sbjct: 17  GDGIRT---TVF--FKGCHLNCWWCHNPESQSYLPELMFNREKCSGCGYCLKACTHGAIT 71

Query: 51  -----------DT--------DFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCV 89
                      DT        D+      +  G  Y++ +L  +I +     E+ G    
Sbjct: 72  IEENGIAHTDPDTCVLCSDCLDYCIHNNREIVGKTYSIKELMSIINKDAQFYEESGGGVT 131

Query: 90  LTGGEPLLQVDV---PLIQALNKRGFEIAVETNG 120
           L+GGE + Q       L + L  +G+ IAV+T G
Sbjct: 132 LSGGEVMTQDMEYLSELCRQLKDKGYNIAVDTCG 165


>gi|229094569|ref|ZP_04225636.1| Radical SAM domain protein [Bacillus cereus Rock3-42]
 gi|228688816|gb|EEL42647.1| Radical SAM domain protein [Bacillus cereus Rock3-42]
          Length = 259

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           ++  A  +++     +    +     GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 1   MEDFAKRLDQIKPHTDYIYLHVK---GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 54


>gi|228936738|ref|ZP_04099529.1| Radical SAM domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229142207|ref|ZP_04270731.1| Radical SAM domain protein [Bacillus cereus BDRD-ST26]
 gi|229199587|ref|ZP_04326248.1| Radical SAM domain protein [Bacillus cereus m1293]
 gi|228583992|gb|EEK42149.1| Radical SAM domain protein [Bacillus cereus m1293]
 gi|228641225|gb|EEK97532.1| Radical SAM domain protein [Bacillus cereus BDRD-ST26]
 gi|228822947|gb|EEM68788.1| Radical SAM domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 259

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           ++  A  +++     +    +     GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 1   MEDFAKRLDQIKPHTDYIYLHVK---GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 54


>gi|170287908|ref|YP_001738146.1| radical SAM domain-containing protein [Thermotoga sp. RQ2]
 gi|170175411|gb|ACB08463.1| Radical SAM domain protein [Thermotoga sp. RQ2]
          Length = 323

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100
           R + +C+ C   +           + +++ +LI +    G          GGEPLL    
Sbjct: 15  RCNFRCKHC---YCEAGKPHPEELSFEEIKELILDMKELGTWALDIV---GGEPLLHPQI 68

Query: 101 VPLIQALNKRGFEIAVETNGTIE 123
           + ++    + G  + + TNG++ 
Sbjct: 69  LDILAFGKEVGQRLMINTNGSLA 91


>gi|108801200|ref|YP_641397.1| radical SAM family protein [Mycobacterium sp. MCS]
 gi|119870351|ref|YP_940303.1| radical SAM domain-containing protein [Mycobacterium sp. KMS]
 gi|126437180|ref|YP_001072871.1| radical SAM domain-containing protein [Mycobacterium sp. JLS]
 gi|108771619|gb|ABG10341.1| Radical SAM [Mycobacterium sp. MCS]
 gi|119696440|gb|ABL93513.1| Radical SAM domain protein [Mycobacterium sp. KMS]
 gi|126236980|gb|ABO00381.1| Radical SAM domain protein [Mycobacterium sp. JLS]
          Length = 514

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 16/91 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   F            V ++   ++++           +L+
Sbjct: 119 CNL-----------RCPTC---FTESSPDLRNVVPVAEVLANVDQRLRRENGRLDVVMLS 164

Query: 92  GGEPLLQV-DVPLIQALNKRGF-EIAVETNG 120
           GGEP L      L+  L  R    I V TNG
Sbjct: 165 GGEPTLHPRLAELLTELVDRPITRILVNTNG 195


>gi|78358583|ref|YP_390032.1| Elongator protein 3/MiaB/NifB [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220988|gb|ABB40337.1| Elongator protein 3/MiaB/NifB [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 464

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 20/108 (18%)

Query: 28  RFSGCNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73
           R  GC    G                  R +  CRFC   F     +     ++  L  L
Sbjct: 74  RTKGCPFDCGLCPEHNQHTCTLLFEITSRCNLHCRFC---FASAGKSAPPDPDMAALRTL 130

Query: 74  IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-IAVETNG 120
           ++              L+GGEP ++ D+P I  + K  F  + + TNG
Sbjct: 131 MDNARPRTGPC--NVQLSGGEPTMRDDLPQIIGMAKERFPFVQLNTNG 176


>gi|95930916|ref|ZP_01313646.1| Ribonucleoside-triphosphate reductase, anaerobic-like
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133042|gb|EAT14711.1| Ribonucleoside-triphosphate reductase, anaerobic-like
           [Desulfuromonas acetoxidans DSM 684]
          Length = 195

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 26/119 (21%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            GC              C +C  +   I      + +  Q+   I+++    +      V
Sbjct: 29  QGCP-----------WHCHYC-HNAALIPEQGQQQLDWQQVVAFIQQRRGLLDG----IV 72

Query: 90  LTGGEPLLQVDVPLIQALN---KRGFEIAVETNGTI-----EPPQGIDWICVSPKAGCD 140
            +GGEP  Q    LI A++   + G ++A+ TNG             DW+ +  KA  D
Sbjct: 73  FSGGEPTAQ--TALIDAMHTVKELGMKVALHTNGAYSDRLRALLPLCDWVGMDLKAPFD 129


>gi|319650007|ref|ZP_08004156.1| molybdenum cofactor biosynthesis protein A [Bacillus sp.
           2_A_57_CT2]
 gi|317398188|gb|EFV78877.1| molybdenum cofactor biosynthesis protein A [Bacillus sp.
           2_A_57_CT2]
          Length = 338

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 18/100 (18%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C++C        D  F+     K    + +++  L +     G ++ R   LTG
Sbjct: 23  DRCNFRCQYCMPAEVFGPDFAFL----PKNELLSYEEIERLAKIFVSLGVEKIR---LTG 75

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPPQGID 129
           GEPL++ D+P L++ L+   G + I + TNG + P    D
Sbjct: 76  GEPLMRKDMPKLVKMLSDIEGLKDIGLTTNGVLLPKHAKD 115


>gi|299144022|ref|ZP_07037102.1| radical SAM domain protein [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518507|gb|EFI42246.1| radical SAM domain protein [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 448

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 33/115 (28%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-----LADLIEEQWITGEKEGR 86
           CNL           +C++C   F       G R  +D+       D I     +G ++  
Sbjct: 103 CNL-----------RCKYC---FASQGDFNGKRLLMDEETGKKALDFI--LKNSGNRKNL 146

Query: 87  YCVLTGGEPLLQVDVPLIQALNKRG----------FEIAVETNGTIEPPQGIDWI 131
                GGEPL+  +  L++ L   G          F   + TNG +     ID+I
Sbjct: 147 EVDFFGGEPLM--NFELVKKLVDYGRNEEKKYNKHFRFTITTNGVLLRDDVIDYI 199


>gi|229164408|ref|ZP_04292337.1| Radical SAM domain protein [Bacillus cereus R309803]
 gi|228619058|gb|EEK75955.1| Radical SAM domain protein [Bacillus cereus R309803]
          Length = 259

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           ++  A  +++     +    +     GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 1   MEDFAKRLDQIKPHTDYIYLHVK---GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 54


>gi|159027366|emb|CAO90552.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 338

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 86  RYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144
               + GGEPLL   +  +++ L  R   + + TN  +   + +D    SP     + + 
Sbjct: 74  PVVSIPGGEPLLHPQIDEIVKGLVDRKKFVYLCTN-ALLLEKSLDKFTPSPYLTFSVHLD 132

Query: 145 GGQE 148
           G +E
Sbjct: 133 GLKE 136


>gi|281411545|ref|YP_003345624.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
 gi|281372648|gb|ADA66210.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
          Length = 323

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 16/159 (10%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100
           R + +C+ C   +           + +++ +LI +    G          GGEPLL    
Sbjct: 15  RCNFRCKHC---YCKAGKPHPEELSFEEIKELILDMKELGTWALDII---GGEPLLHPQI 68

Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP 160
           + ++    + G  + + TNG++   + +  I    K      + G   + L  P+   + 
Sbjct: 69  LDILAFGKEVGQRLMINTNGSLATKEMVQKI----KKANPDVLVG---VSLEGPEPETND 121

Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199
                 +FER ++Q +   F++E   + I        WR
Sbjct: 122 FVRGIGNFER-AVQGIKN-FVDEGFQVTILNVINRRNWR 158


>gi|238761532|ref|ZP_04622507.1| pyruvate formate-lyase 3-activating enzyme [Yersinia kristensenii
           ATCC 33638]
 gi|238700046|gb|EEP92788.1| pyruvate formate-lyase 3-activating enzyme [Yersinia kristensenii
           ATCC 33638]
          Length = 299

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           G   ++D   + +        + G    L+GGEP +Q +V   L+Q  ++ G   AVE+
Sbjct: 101 GSPMDIDATMETLLRDLPFYRRSGGGVTLSGGEPFMQPEVAAELLQRCHQLGIHTAVES 159


>gi|210621095|ref|ZP_03292458.1| hypothetical protein CLOHIR_00401 [Clostridium hiranonis DSM 13275]
 gi|210154916|gb|EEA85922.1| hypothetical protein CLOHIR_00401 [Clostridium hiranonis DSM 13275]
          Length = 305

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 60/175 (34%), Gaps = 13/175 (7%)

Query: 34  LWSGREQDRLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            W  R +  L  +C   C +   G    KG    V+++   +++  I   +      L+G
Sbjct: 82  YWVDRTKCTLCGECALVCPS---GALSMKGKEMTVEEVIKEVKKDDIQYYRSNGGVTLSG 138

Query: 93  GEPLLQVDV--PLIQALNKRGFEIAVETNGTI------EPPQGIDWICVSPKAGCDLKIK 144
           GE L Q      + +A   +G+  A+ET G +      +    ID + +  K+      K
Sbjct: 139 GEALTQPAFAKEIFKACKAKGWHTAIETEGFVNEDVIRDVVPYIDLVLLDIKSISSEPHK 198

Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199
               +              I     R  + P      EE T +A  +    P  R
Sbjct: 199 KFTGVDNEKIMKAAKLIQEITHTIIRVPVIPGFNANEEEITKIA-QFAGSLPNVR 252


>gi|161760543|ref|NP_908108.2| molybdenum cofactor biosynthesis protein A [Wolinella succinogenes
           DSM 1740]
          Length = 321

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 10/85 (11%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           +R + +C++C  DT        +     + QL +L++     G K+ R   +TGGEP+++
Sbjct: 19  NRCNFRCQYCMPDTPEDFFDAEED--IPLAQLLELVKVAIDEGVKKIR---ITGGEPMIR 73

Query: 99  VDVP-LIQA--LNKRGFEIAVETNG 120
            D+   I    L     +IA+ TNG
Sbjct: 74  KDLDWFIAQIYLYNPEIDIALTTNG 98


>gi|148243591|ref|YP_001228748.1| molybdenum cofactor biosynthesis protein [Synechococcus sp. RCC307]
 gi|147851901|emb|CAK29395.1| Molybdenum cofactor biosynthesis protein [Synechococcus sp. RCC307]
          Length = 350

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 47/130 (36%), Gaps = 41/130 (31%)

Query: 27  CRF---SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            R    + CNL            C +C        G +  R ++ Q   LI      G  
Sbjct: 18  LRLSLTARCNL-----------SCPYC-----QPDGGEDSRLSLHQRLQLIRACCELGLT 61

Query: 84  EGRYCVLTGGEPLLQVDVPLIQALNKRGF-----------EIAVETNGTI--------EP 124
             R   LTGGEPLL  ++  +    ++G            E+A+ TNGT+          
Sbjct: 62  TLR---LTGGEPLLAPELDELLLAIQQGRNSRHDPLQQLQEVALTTNGTLLNGCRAEQLK 118

Query: 125 PQGIDWICVS 134
             G+D I +S
Sbjct: 119 RAGLDRITIS 128


>gi|299822951|ref|ZP_07054837.1| pyruvate formate-lyase activating enzyme [Listeria grayi DSM 20601]
 gi|299816480|gb|EFI83718.1| pyruvate formate-lyase activating enzyme [Listeria grayi DSM 20601]
          Length = 246

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 62/181 (34%), Gaps = 41/181 (22%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C+FC   DT  +G    KG       + D   +   
Sbjct: 22  IRFIVFMQGC-----------LLRCQFCHNPDTWKIG----KGTERTAQDVFDEAIKYKE 66

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKA 137
             +  G    ++GGEPLLQVD  + L     + G    +++ G           C S   
Sbjct: 67  FWDASGGGITVSGGEPLLQVDFLIELFTLCKQAGVNTTIDSCGG----------CFSRDP 116

Query: 138 GCDLKIKGGQELK--LVFPQVNVSPENYIGFDFERFSLQPM---DGPFLEENTNLAISYC 192
               K+    E+   ++     ++PE ++       +  P+        E+N  + I + 
Sbjct: 117 EFIEKLDRLMEVTDLILLDIKQINPEKHLKLTTRPNA--PILDFANYLKEKNQPIWIRHV 174

Query: 193 F 193
            
Sbjct: 175 L 175


>gi|229107173|ref|ZP_04237161.1| Radical SAM domain protein [Bacillus cereus Rock3-28]
 gi|228676275|gb|EEL31132.1| Radical SAM domain protein [Bacillus cereus Rock3-28]
          Length = 259

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           ++  A  +++     +    +     GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 1   MEDFAKRLDQIKPHTDYIYLHVK---GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 54


>gi|198283881|ref|YP_002220202.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667007|ref|YP_002426516.1| radical SAM domain protein [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248402|gb|ACH83995.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519220|gb|ACK79806.1| radical SAM domain protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 367

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 22/116 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+     T   R +V++     EE             +
Sbjct: 38  CNL-----------ACSGCGKIDY--PDETLDRRLSVEECIGAAEECG------APIVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
            GGEPL+  D+P +++ L +R   + + TN  +   + +D    SP     + + G
Sbjct: 79  AGGEPLIHKDMPVVVEGLVERKRFVYLCTN-ALLLKKRMDDYRPSPYLTFSVHLDG 133


>gi|196036111|ref|ZP_03103511.1| conserved hypothetical protein [Bacillus cereus W]
 gi|228949180|ref|ZP_04111448.1| Radical SAM domain protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|195991278|gb|EDX55246.1| conserved hypothetical protein [Bacillus cereus W]
 gi|228810463|gb|EEM56816.1| Radical SAM domain protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 259

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           ++  A  +++     +    +     GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 1   MEDFAKRLDQIKPHTDYIYLHVK---GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 54


>gi|284039241|ref|YP_003389171.1| radical SAM protein [Spirosoma linguale DSM 74]
 gi|283818534|gb|ADB40372.1| Radical SAM domain protein [Spirosoma linguale DSM 74]
          Length = 327

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 12/97 (12%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN +      R +A C FCD   +  + +         L +  +          R    T
Sbjct: 10  CNYYVTY---RCNASCGFCD---IWERPSPY-----VTLENARQNLRDLKRLGVRVVDFT 58

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQG 127
           GGEPLL   +P L++     G    V TN  + P Q 
Sbjct: 59  GGEPLLHRQLPELLREAKALGLITTVTTNALLYPKQA 95


>gi|152991324|ref|YP_001357046.1| molybdenum cofactor biosynthesis protein A [Nitratiruptor sp.
           SB155-2]
 gi|166217886|sp|A6Q5D0|MOAA_NITSB RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|151423185|dbj|BAF70689.1| molybdenum cofactor biosynthesis protein A [Nitratiruptor sp.
           SB155-2]
          Length = 322

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 67/170 (39%), Gaps = 24/170 (14%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           +R + +C++C  +  F  +        N + L   ++     G  + R   LTGGEP L+
Sbjct: 19  ERCNFRCQYCMPEKPFSWVPKEN--LLNFEDLFKFVKAAIDEGITKIR---LTGGEPTLR 73

Query: 99  VDVP-LIQALNK--RGFEIAVETNGTIEPPQGIDW---------ICV-SPKAGCDLKIKG 145
            D+   I+ +       ++A+ TNG +      D          I + S K     KI  
Sbjct: 74  ADLDKFIKMIYDYKPDIDLAMTTNGYLLKDIAQDLKKAGLKRLNISLDSLKPEVAAKIAS 133

Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
              LK V   ++ + E  +     + ++ P+ G   +E  +  + YC   
Sbjct: 134 KDVLKNVLEGIDAALEAGLKV---KINMVPLKGVNEDEIVD-VMEYCKDR 179


>gi|83590095|ref|YP_430104.1| radical SAM family protein [Moorella thermoacetica ATCC 39073]
 gi|83573009|gb|ABC19561.1| Radical SAM [Moorella thermoacetica ATCC 39073]
          Length = 355

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +CR C   + G   G  G      +  D +++            +L
Sbjct: 10  CNL-----------KCRHC---YAGAGSGVAGDEMTTPEARDFLDQLVA---FRVPVLLL 52

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           +GGEPL++ D+  L+    K G  + + TNGT+
Sbjct: 53  SGGEPLVRPDIFDLMATAVKGGLRVTLSTNGTL 85


>gi|34484012|emb|CAE11008.1| MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A [Wolinella succinogenes]
          Length = 363

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 10/85 (11%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           +R + +C++C  DT        +     + QL +L++     G K+ R   +TGGEP+++
Sbjct: 61  NRCNFRCQYCMPDTPEDFFDAEED--IPLAQLLELVKVAIDEGVKKIR---ITGGEPMIR 115

Query: 99  VDVP-LIQA--LNKRGFEIAVETNG 120
            D+   I    L     +IA+ TNG
Sbjct: 116 KDLDWFIAQIYLYNPEIDIALTTNG 140


>gi|27375649|ref|NP_767178.1| hypothetical protein blr0538 [Bradyrhizobium japonicum USDA 110]
 gi|27348786|dbj|BAC45803.1| blr0538 [Bradyrhizobium japonicum USDA 110]
          Length = 481

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 14/103 (13%)

Query: 31  GCNLWSGREQDRLSAQCR-----------FCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G   D     C             C   F         ++      + + +  +
Sbjct: 85  GCPYDCGLCPDHEQHSCLALIEITEHCNLTCPVCFA-ESAPARTKFTPLATVEKMLDALV 143

Query: 80  TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNG 120
             E E     ++GGEP L  D   ++ A+  R    + + TNG
Sbjct: 144 ASEGEPDLVQISGGEPTLHPDFFKILDAVRARPIRHVMINTNG 186


>gi|182701574|ref|ZP_02613151.2| radical SAM domain protein [Clostridium botulinum NCTC 2916]
 gi|182670554|gb|EDT82528.1| radical SAM domain protein [Clostridium botulinum NCTC 2916]
          Length = 297

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD-LIEEQWITGEKEGRYCVL 90
           CNL            C FC       +  +  ++   ++ D ++++     +    +   
Sbjct: 20  CNL-----------ACDFC------PETRRKPQFMPIEIFDKILDQIKPYTDYIYFHVK- 61

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             GEPLL  D+   +    K+GF++ + TNGT+
Sbjct: 62  --GEPLLHPDIDKFLDLSYKKGFKVNITTNGTL 92


>gi|160937702|ref|ZP_02085062.1| hypothetical protein CLOBOL_02594 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439347|gb|EDP17099.1| hypothetical protein CLOBOL_02594 [Clostridium bolteae ATCC
           BAA-613]
          Length = 230

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRG 111
           +   +   G +YN ++L   I +        G     +GGEPL   ++   + + +++RG
Sbjct: 24  YADAREMMGRKYNEEELLTEILKDRQYYGMSGGGVTFSGGEPLYYSEIIGAVGEQMHRRG 83

Query: 112 FEIAVETNGTIEPPQGIDW 130
           +   VET G +      D 
Sbjct: 84  YNTLVETCGHVPQKALEDI 102


>gi|157377180|ref|YP_001475780.1| radical SAM family Fe-S protein [Shewanella sediminis HAW-EB3]
 gi|157319554|gb|ABV38652.1| Fe-S protein, radical SAM family [Shewanella sediminis HAW-EB3]
          Length = 486

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 14/103 (13%)

Query: 31  GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G   D     C             C T +      +     ++Q+  +++   +
Sbjct: 83  GCPYDCGICPDHEQHGCTVLVEVTDHCNLRCPTCYANSSPERQTHRGMEQVKAMLD-LAV 141

Query: 80  TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETNG 120
             E E     ++GGEP L  D   ++    +R    + V TNG
Sbjct: 142 KNEGEPNIVQISGGEPTLHPDFFTILDEAKERPIKHLLVNTNG 184


>gi|90422594|ref|YP_530964.1| pyruvate formate-lyase activating [Rhodopseudomonas palustris
           BisB18]
 gi|90104608|gb|ABD86645.1| Pyruvate formate-lyase activating [Rhodopseudomonas palustris
           BisB18]
          Length = 267

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 14/94 (14%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            +GC             +C++C               + D L D+           G   
Sbjct: 51  LAGC-----------LLRCQYCHNPDSWHMHHGKPSNSRDVLRDIAAYTKFLMHAHGG-V 98

Query: 89  VLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
            L+GGEPL+Q D    +++   + G   A++T G
Sbjct: 99  TLSGGEPLVQPDFTHAILRGCKEMGLHTALDTAG 132


>gi|325525113|gb|EGD03003.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. TJI49]
          Length = 355

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 25/114 (21%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +  +       +++  +       G ++ R   +TGGE
Sbjct: 45  DRCNFRCVYCMPRAVFDKDYPFLPHS--ALLTHEEIERVARIFVAHGVEKIR---ITGGE 99

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           PLL+ ++  LI+ L +      R  ++ + TNG++           G+  + VS
Sbjct: 100 PLLRKNLEFLIERLARLTTRDGRPLDLTLTTNGSLLARKARALKDAGLTRVTVS 153


>gi|296103236|ref|YP_003613382.1| glycyl-radical activating family protein [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057695|gb|ADF62433.1| glycyl-radical activating family protein [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 299

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVET 118
           G    V+++   +       ++ G    L+GGEP +  D+ L   +A +++G   AVET
Sbjct: 101 GEERQVEEIMATVLRDKPFYDRSGGGITLSGGEPFMNPDLALALFKASHEQGIHTAVET 159


>gi|237711557|ref|ZP_04542038.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237725989|ref|ZP_04556470.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265752984|ref|ZP_06088553.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229435797|gb|EEO45874.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229454252|gb|EEO59973.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263236170|gb|EEZ21665.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 360

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 14/90 (15%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR C +D   I G        +    +++      +    + ++T
Sbjct: 42  CNL-----------HCRHCGSDCKKIAG--HPDMPKEDFLRVLDSVSAQNDPHKIFVIIT 88

Query: 92  GGEPLLQVDVPLI-QALNKRGFEIAVETNG 120
           GGEPL++ D+    +A+ +RGF   + TNG
Sbjct: 89  GGEPLMRKDLEECGRAIYERGFPWGMVTNG 118


>gi|153874965|ref|ZP_02002969.1| heme d1 biosynthesis protein [Beggiatoa sp. PS]
 gi|152068570|gb|EDN67030.1| heme d1 biosynthesis protein [Beggiatoa sp. PS]
          Length = 341

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 27/102 (26%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT--------GEK 83
           CNL           +C  C               + + L +++E+            G+ 
Sbjct: 18  CNL-----------RCTHC-----YQDNYARNELSFEHLLNILEQFKTLLATLTERHGKP 61

Query: 84  EGRYCVLTGGEPLL-QVDVPLIQALNKRG--FEIAVETNGTI 122
              +  +TGGEP   Q  + L++        F  A+ TNG+ 
Sbjct: 62  IHAHITVTGGEPFARQDFLDLLEIFAAHHSLFSFAILTNGSF 103


>gi|29348365|ref|NP_811868.1| putative pyruvate formate-lyase 3 activating enzyme [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253569265|ref|ZP_04846675.1| glycyl-radical enzyme activating family protein [Bacteroides sp.
           1_1_6]
 gi|29340269|gb|AAO78062.1| putative pyruvate formate-lyase 3 activating enzyme [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251841284|gb|EES69365.1| glycyl-radical enzyme activating family protein [Bacteroides sp.
           1_1_6]
          Length = 299

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 44/144 (30%), Gaps = 48/144 (33%)

Query: 22  RVAVFCRFSGCNL---WSGREQDRLSA--------QCRFC--------------DTDFVG 56
           R  +F    GCNL   W    +             +C  C              D++ + 
Sbjct: 20  RSTIF--LKGCNLRCKWCHNPETWSMKPQLQYIEDKCIHCFSCITVCEYEVLFIDSNRLS 77

Query: 57  IQ-------------------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           I                       G   +   +   I +  I  +K G    L+GGEPL 
Sbjct: 78  IHRERCTDCGKCTERCTSGALSWIGKEVDSSDIIHEILQDLIYYQKSGGGITLSGGEPLQ 137

Query: 98  QVDVPL--IQALNKRGFEIAVETN 119
           Q D  L  +Q   +     AVETN
Sbjct: 138 QKDFALDILQKCREHRIHTAVETN 161


>gi|238894848|ref|YP_002919582.1| pyrroloquinoline quinone biosynthesis protein PqqE [Klebsiella
           pneumoniae NTUH-K2044]
 gi|130802|sp|P27507|PQQE_KLEPN RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|809708|emb|CAA41583.1| pqqE [Klebsiella pneumoniae]
 gi|238547164|dbj|BAH63515.1| pyrroloquinoline quinone synthesis protein E [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 380

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF             +Q  ++  +    G  +  +  
Sbjct: 11  PLWLLAELTYRCPLQCPYCSNPLDFARQDKE----LTTEQWIEVFRQARAMGSVQLGF-- 64

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +GGEPL + D+P LI+A    GF   + T+G
Sbjct: 65  -SGGEPLTRKDLPELIRAARDLGFYTNLITSG 95


>gi|330010617|ref|ZP_08306843.1| coenzyme PQQ biosynthesis protein E [Klebsiella sp. MS 92-3]
 gi|328534442|gb|EGF61037.1| coenzyme PQQ biosynthesis protein E [Klebsiella sp. MS 92-3]
          Length = 380

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF             +Q  ++  +    G  +  +  
Sbjct: 11  PLWLLAELTYRCPLQCPYCSNPLDFARQDKE----LTTEQWIEVFRQARAMGSVQLGF-- 64

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +GGEPL + D+P LI+A    GF   + T+G
Sbjct: 65  -SGGEPLTRKDLPELIRAARDLGFYTNLITSG 95


>gi|268324255|emb|CBH37843.1| conserved hypothetical protein, radical SAM superfamily [uncultured
           archaeon]
          Length = 365

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +         G   T+ G+  +DQ+A++               +L+
Sbjct: 23  CNLRCPHCYIDAEER------AGKGELSTEEGKMLIDQIAEV----------SKPILILS 66

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ DV  L +    +G  +A+ TNGT+
Sbjct: 67  GGEPLLRADVFELARYATGKGLTVAMGTNGTL 98


>gi|153941209|ref|YP_001390424.1| radical SAM domain-containing protein [Clostridium botulinum F str.
           Langeland]
 gi|170755989|ref|YP_001780700.1| radical SAM domain-containing protein [Clostridium botulinum B1
           str. Okra]
 gi|152937105|gb|ABS42603.1| radical SAM domain protein [Clostridium botulinum F str. Langeland]
 gi|169121201|gb|ACA45037.1| radical SAM domain protein [Clostridium botulinum B1 str. Okra]
          Length = 297

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD-LIEEQWITGEKEGRYCVL 90
           CNL            C FC       +  +  ++   ++ D ++++     +    +   
Sbjct: 20  CNL-----------ACDFC------PETRRKPQFMPIEIFDKILDQIKPYTDYIYFHVK- 61

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             GEPLL  D+   +    K+GF++ + TNGT+
Sbjct: 62  --GEPLLHPDIDKFLDLSYKKGFKVNITTNGTL 92


>gi|152970364|ref|YP_001335473.1| pyrroloquinoline quinone biosynthesis protein PqqE [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|166989888|sp|A6T9H2|PQQE_KLEP7 RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|150955213|gb|ABR77243.1| Pyrroloquinolinquinone Synthase E [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 380

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF             +Q  ++  +    G  +  +  
Sbjct: 11  PLWLLAELTYRCPLQCPYCSNPLDFARQDKE----LTTEQWIEVFRQARAMGSVQLGF-- 64

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +GGEPL + D+P LI+A    GF   + T+G
Sbjct: 65  -SGGEPLTRKDLPELIRAARDLGFYTNLITSG 95


>gi|158522203|ref|YP_001530073.1| glycyl-radical activating family protein [Desulfococcus oleovorans
           Hxd3]
 gi|158511029|gb|ABW67996.1| glycyl-radical enzyme activating protein family [Desulfococcus
           oleovorans Hxd3]
          Length = 307

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 58/174 (33%), Gaps = 27/174 (15%)

Query: 32  CN---LWSGREQDRLSAQCRFCDTDFVGIQGTK-------GGRYNVDQLADLIEEQWITG 81
           C    L           +C  C   F  +           G    V  + + +       
Sbjct: 68  CPEQALSKANPFYIDRKRCTLC---FACVAACPSGALEQVGKEMPVTDILEQVLPDKPFF 124

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139
           +  G    L+GGEP L +D    L+ A+ +      VET G  +  + +  +        
Sbjct: 125 DASGGGVTLSGGEPTLFMDFTADLLTAIKREDIHTLVETCGLFDAERFVTML-------Y 177

Query: 140 DLKIKGGQELKLVFPQVNVS----PENYIGFDFER-FSLQPMDGPFLEENTNLA 188
            +      ++K++ P  + +    P + I  +F   F+  P DG  L   T L 
Sbjct: 178 PMLDTIYFDIKIIDPTAHKTYCGVPNDRILANFATLFARAPKDGKTLLPRTPLI 231


>gi|307705627|ref|ZP_07642478.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis
           SK597]
 gi|307620803|gb|EFN99888.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis
           SK597]
          Length = 264

 Score = 43.5 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 26/118 (22%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        VF    GC++           +C++C   DT +        
Sbjct: 18  TESFGSVDGPGIRFI----VF--LQGCHM-----------RCQYCHNPDT-WAMESNKSR 59

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
            R   D L + +  +   G K G    ++GGE LLQ+D  + L     + G    ++T
Sbjct: 60  ERTVDDVLTEALRYRGFWGNKGG--ITVSGGEALLQIDFLIALFTKAKEHGIHCTLDT 115


>gi|126465695|ref|YP_001040804.1| radical SAM domain-containing protein [Staphylothermus marinus F1]
 gi|126014518|gb|ABN69896.1| Radical SAM domain protein [Staphylothermus marinus F1]
          Length = 564

 Score = 43.5 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L +    +R +  C +C   +    G       ++Q+  +I +    G        LTGG
Sbjct: 114 LVNIVLTNRCNLSCWYC-FFYAEAAGYVYEP-TIEQIVSMIRQIKKQGV--AVNVQLTGG 169

Query: 94  EPLL-QVDVPLIQALNKRGFE-IAVETNG 120
           EP L +  + +++AL   G   + + TNG
Sbjct: 170 EPTLREDLIDIVKALKAEGVRHLQLNTNG 198


>gi|67527057|gb|AAY68326.1| putative molybdenum cofactor biosynthesis enzyme [uncultured marine
           bacterium 66A03]
          Length = 334

 Score = 43.5 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 20/149 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C ++ +     K     ++++A + +     G K+ R   LTGGEPL++ +
Sbjct: 23  DRCDFRCVYCMSEQMTFL-PKKDLLTLEEIAIVCDSFIELGTKKIR---LTGGEPLVRRN 78

Query: 101 V-PLIQAL---NKRGF--EIAVETNGT-------IEPPQGIDWICVSPKAGCDLK---IK 144
           +  LI+ L    K+G   EI + TNG+       +    G+  I VS       K   I 
Sbjct: 79  IMHLIKHLGTHVKKGKLEEITITTNGSQLQKFSDLLLEAGVRRINVSIDTLDPEKFERIT 138

Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSL 173
              +L +V   ++ + +  +       +L
Sbjct: 139 RWGKLDVVLNGLDAAKKAGLKIKLNTVAL 167


>gi|302342216|ref|YP_003806745.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075]
 gi|301638829|gb|ADK84151.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075]
          Length = 370

 Score = 43.5 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 25/112 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL     +     +C                     Q  +L+ +    G       +LT
Sbjct: 38  CNLRCLHCRAGAEDEC-------------YPDELTTAQGEELLRDLATMGR---PVVILT 81

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEPPQ--------GIDWICVS 134
           GGEPLL      L    +  G  + + TNG +  P+        GI  I VS
Sbjct: 82  GGEPLLRHDIFHLAAYGHGLGLRMVMGTNGVLITPEVARRLVEAGIQRISVS 133


>gi|325829928|ref|ZP_08163386.1| molybdenum cofactor biosynthesis protein A [Eggerthella sp. HGA1]
 gi|325488095|gb|EGC90532.1| molybdenum cofactor biosynthesis protein A [Eggerthella sp. HGA1]
          Length = 333

 Score = 43.5 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C     G+Q       ++ ++ ++ E   +      R   LTGGEPL+++ 
Sbjct: 18  DRCNFRCIYC-MPEEGVQSLAHE--DILRIEEIEEAVRVAAGMGIRSIRLTGGEPLVRLG 74

Query: 101 -VPLIQAL-NKRGFE-IAVETNGTIEPPQGID 129
            V L++A+ +  G E +++ TNG + P    D
Sbjct: 75  VVDLVRAIAHTPGIENVSMTTNGVLLPKMAAD 106


>gi|317489950|ref|ZP_07948442.1| molybdenum cofactor biosynthesis protein A [Eggerthella sp.
           1_3_56FAA]
 gi|316910948|gb|EFV32565.1| molybdenum cofactor biosynthesis protein A [Eggerthella sp.
           1_3_56FAA]
          Length = 333

 Score = 43.5 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C     G+Q       ++ ++ ++ E   +      R   LTGGEPL+++ 
Sbjct: 18  DRCNFRCIYC-MPEEGVQSLAHE--DILRIEEIEEAVRVAAGMGIRSIRLTGGEPLVRLG 74

Query: 101 -VPLIQAL-NKRGFE-IAVETNGTIEPPQGID 129
            V L++A+ +  G E +++ TNG + P    D
Sbjct: 75  VVDLVRAIAHTPGIENVSMTTNGVLLPKMAAD 106


>gi|297159777|gb|ADI09489.1| radical SAM domain-containing protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 466

 Score = 43.5 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 18/90 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C   F G    +  R +++++  L  E    G        LT
Sbjct: 109 CNL-----------GCTHC---FAGDLPRREKRLSLEEIDRLFAEMARLGAFRLG---LT 151

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           GGEPLL+ D+  +I      G    + TNG
Sbjct: 152 GGEPLLRKDIFQIIDLALAHGLAPCITTNG 181


>gi|260221009|emb|CBA29146.1| Molybdenum cofactor biosynthesis protein A [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 385

 Score = 43.5 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 29/135 (21%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNV----DQLADLIEEQWITGEKEGRYCVLTGGEPL 96
           DR + +C +C    V  +      ++     +++  L ++    G ++ R   LTGGEPL
Sbjct: 55  DRCNFRCSYCMPKEVFHKDYPYLPHSALLSFEEITTLAKQFVALGVQKIR---LTGGEPL 111

Query: 97  LQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS-------- 134
           L+ ++  LI+ L           ++ + TNG++           G+  + VS        
Sbjct: 112 LRKNIETLIEQLAAITTPEGHALDLTLTTNGSLLAKKARSLKDAGLQRVTVSLDGLDDRI 171

Query: 135 PKAGCDLKIKGGQEL 149
            KA  D+       L
Sbjct: 172 FKAMNDVDFPVADVL 186


>gi|257063876|ref|YP_003143548.1| predicted Fe-S oxidoreductase [Slackia heliotrinireducens DSM
           20476]
 gi|256791529|gb|ACV22199.1| predicted Fe-S oxidoreductase [Slackia heliotrinireducens DSM
           20476]
          Length = 769

 Score = 43.5 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL     +           T + G       +  +D +A + +             +LT
Sbjct: 82  CNLACAHCRAAAHC------TPYPGELSLDECKAVMDDIASITD----------PILILT 125

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPL++ D+  +I   +++G    + TNGT+
Sbjct: 126 GGEPLMRKDIWEIIDYAHEKGLHPVIGTNGTL 157


>gi|139438417|ref|ZP_01771933.1| Hypothetical protein COLAER_00923 [Collinsella aerofaciens ATCC
           25986]
 gi|133775956|gb|EBA39776.1| Hypothetical protein COLAER_00923 [Collinsella aerofaciens ATCC
           25986]
          Length = 272

 Score = 43.5 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 29/89 (32%), Gaps = 25/89 (28%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRY-NVDQLADLIEEQWIT 80
           VF    GC +           +C +C   DT         GG    V+ L D  +     
Sbjct: 41  VFV--QGCPM-----------RCAYCHNPDT-----WSVNGGTMVTVEHLMDEFQSN--H 80

Query: 81  GEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
                    ++GGEPLLQ +  L      
Sbjct: 81  EFYRSGGITVSGGEPLLQPEF-LADLFCA 108


>gi|325960016|ref|YP_004291482.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanobacterium sp. AL-21]
 gi|325331448|gb|ADZ10510.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanobacterium sp. AL-21]
          Length = 247

 Score = 43.5 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 14/104 (13%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           +   +C +C           G  Y ++++   IEE     +      V++GGEPL+Q   
Sbjct: 35  KCMLRCPYC---HNSEIIEGGDVYQLEEIFQKIEESIDFIDS----VVISGGEPLMQDTQ 87

Query: 102 PLIQALNKRGFEIA--VETNGTIE-----PPQGIDWICVSPKAG 138
                 + +  E++  ++TNG          + ID++ +  KA 
Sbjct: 88  VFEILKHAKSLELSTKMDTNGYYPEKLQKMIKLIDYVALDIKAP 131


>gi|182701901|ref|ZP_02617584.2| radical SAM domain protein [Clostridium botulinum Bf]
 gi|237794363|ref|YP_002861915.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657]
 gi|182673949|gb|EDT85910.1| radical SAM domain protein [Clostridium botulinum Bf]
 gi|229264062|gb|ACQ55095.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 297

 Score = 43.5 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 20/92 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC          K    +++    ++++     +    +    
Sbjct: 20  CNL-----------ACDFC-----PQTRRKPQFMSIEIFDKILDQIKPYTDYIYFHVK-- 61

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            GEPLL  D+   +    K+GF++ + TNGT+
Sbjct: 62  -GEPLLHPDIDKFLDLSYKKGFKVNITTNGTL 92


>gi|20094976|ref|NP_614823.1| molybdenum cofactor biosynthesis protein [Methanopyrus kandleri
           AV19]
 gi|24211984|sp|Q8TV60|MOAA_METKA RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|19888230|gb|AAM02753.1| Molybdenum cofactor biosynthesis enzyme [Methanopyrus kandleri
           AV19]
          Length = 307

 Score = 43.5 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 17/102 (16%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R +  C +C       +G + GR +    A+         E   R   +TGGEPLL+ D 
Sbjct: 19  RCNMACVYC-----HREGERPGR-SELSAAEWGRLLRACAEIGVRKVKITGGEPLLRRD- 71

Query: 102 PLIQALN-KRGF-EIAVETNGTIEPP-------QGIDWICVS 134
            LI+ +    GF E+++ TNG +           G+D + VS
Sbjct: 72  -LIEIIENAEGFEEVSLVTNGVLLADYAGDLAEAGLDRVNVS 112


>gi|318040844|ref|ZP_07972800.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp.
           CB0101]
          Length = 342

 Score = 43.5 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 34/124 (27%)

Query: 27  CRF---SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            R    + CNL            C +C    +       G  +++Q   + +     G K
Sbjct: 14  LRLSLTARCNL-----------ACPYC----LPDGQEPSGLLSMEQRLQVAKAAVALGAK 58

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQA---LNKRGF-EIAVETNGTI--------EPPQGIDW 130
             R   LTGGEPLL  ++  LI A   L + G  EIA+ +NG +            G+D 
Sbjct: 59  SLR---LTGGEPLLYKELDELIGALQPLRREGLQEIALTSNGMLLSAERAQQLREAGLDR 115

Query: 131 ICVS 134
           + +S
Sbjct: 116 LTLS 119


>gi|207110535|ref|ZP_03244697.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 98

 Score = 43.5 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 12/81 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLLQV-DV 101
           +C++C      +  T    ++ ++L    +++E   I  ++  +   +TGGEPLL+    
Sbjct: 24  RCQYC------MPATPLDFFDDEELLPLDNVLEFLKIAIDEGVKKIRITGGEPLLRKGLD 77

Query: 102 PLIQALNKRGFEIA--VETNG 120
             I  L+    E+A  + TNG
Sbjct: 78  EFIAKLHAYNKEVALVLSTNG 98


>gi|20094332|ref|NP_614179.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
 gi|19887388|gb|AAM02109.1| Fe-S oxidoreductase fused to a metal-binding domain [Methanopyrus
           kandleri AV19]
          Length = 468

 Score = 43.5 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   +        G  + ++  ++IE      E        +
Sbjct: 127 CNL-----------RCEHC---YSEAGKPAPGELDTERALEVIERF---SEWNVPGLAFS 169

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GGEPL++ D   L +A    G   A+ TNGT+
Sbjct: 170 GGEPLMRDDFFELAEASANEGMFTALATNGTL 201


>gi|312880166|ref|ZP_07739966.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260]
 gi|310783457|gb|EFQ23855.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260]
          Length = 326

 Score = 43.5 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 54/154 (35%), Gaps = 32/154 (20%)

Query: 31  GCNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           GCNL            C FC  D+    +          ++L  L E             
Sbjct: 79  GCNL-----------DCPFCQNDSLSHPLGWIASPFLEPEELVALAEAGGEGA------V 121

Query: 89  VLTGGEPLLQVDVPLIQA---LNKRGFEI-AVETNGTIEPPQ------GIDWICVSPKAG 138
             T  EPL+  +  L++A   L++RG  +  + TNGTIEP         +D   V  KA 
Sbjct: 122 AFTYNEPLIHPEY-LLEAGRQLHRRGIRVVWI-TNGTIEPEPLEEILGKVDAANVDLKAF 179

Query: 139 CDLKIKG-GQELKLVFPQVNVSPENYIGFDFERF 171
                +  G +L+ V   +    E  +  +    
Sbjct: 180 TQEGYRSLGGDLESVLRTLRRMREAGVHLEVTHL 213


>gi|237802427|ref|ZP_04590888.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331025284|gb|EGI05340.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 389

 Score = 43.5 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C       +  +G     +Q   +++E    G  +      +
Sbjct: 22  PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELTTEQWFKVMQEAREMGAAQ---IGFS 76

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    + GF   + T+G
Sbjct: 77  GGEPLVRQDLAELIAEARRLGFYTNLITSG 106


>gi|50122691|ref|YP_051858.1| putative pyruvate formate-lyase activating enzyme [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613217|emb|CAG76668.1| putative pyruvate formate-lyase activating enzyme [Pectobacterium
           atrosepticum SCRI1043]
          Length = 316

 Score = 43.5 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
           G    V +L  +I + +   +  G    L+GGE  LQ D  V L+QA  ++    AVET 
Sbjct: 114 GKDMTVAELMAVIMQDYSFYQSSGGGVTLSGGEVSLQTDFAVALLQACKQKMINTAVETQ 173

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
           GT           V+     D+K     + K +F
Sbjct: 174 GTTSISHYDQLAAVTDMFLFDIKHIDTNQHKALF 207


>gi|330838563|ref|YP_004413143.1| molybdenum cofactor biosynthesis protein A [Selenomonas sputigena
           ATCC 35185]
 gi|329746327|gb|AEB99683.1| molybdenum cofactor biosynthesis protein A [Selenomonas sputigena
           ATCC 35185]
          Length = 328

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +CR+C          K    ++    +++       +   R   LTGGEPLL+  
Sbjct: 18  DRCNLRCRYC---MPADGVEKLSHADILSFEEIVRVVRALAQLGIRKVRLTGGEPLLRRG 74

Query: 101 -VPLIQALNK-RGFE-IAVETNGTI 122
            V L++ +    G E +A+ TNG +
Sbjct: 75  VVDLVREIKAVEGIERVALTTNGVL 99


>gi|300856502|ref|YP_003781486.1| putative molybdenum cofactor biosynthesis protein A [Clostridium
           ljungdahlii DSM 13528]
 gi|300436617|gb|ADK16384.1| predicted molybdenum cofactor biosynthesis protein A [Clostridium
           ljungdahlii DSM 13528]
          Length = 322

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +C +C      ++   G     + +  +I+     G  + RY   TG
Sbjct: 10  NYLRISLTDRCNLRCIYCMPKEGIVKRPYGDLLRFEDILKIIKAAATLGINKIRY---TG 66

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           GEPL+  D+  LI+     +G   +A+ TNG
Sbjct: 67  GEPLIMKDIEYLIRETANIKGITDVAITTNG 97


>gi|224367545|ref|YP_002601708.1| PflC1 [Desulfobacterium autotrophicum HRM2]
 gi|223690261|gb|ACN13544.1| PflC1 [Desulfobacterium autotrophicum HRM2]
          Length = 302

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           G  ++  ++AD+  +     ++ G     +GGEPL Q        + L KRG  IA+ET+
Sbjct: 104 GKTFSPREVADITLKDVAFYDESGGGVTFSGGEPLFQWQFVRECSKLLRKRGVHIAMETS 163

Query: 120 G 120
           G
Sbjct: 164 G 164


>gi|254442555|ref|ZP_05056031.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198256863|gb|EDY81171.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 251

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 21/122 (17%)

Query: 28  RFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           R + C LW    Q      C FC ++DF   +   G R +V+     + ++    +    
Sbjct: 24  RTA-CILWFTGCQM----ACPFCHNSDFATGE---GKRIDVEDTLAFLRKRRRMLDG--- 72

Query: 87  YCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVSPKAG 138
               +GGE LL   V P+I+A+ + G+ + V+TNG +            +D++ +  KA 
Sbjct: 73  -VTFSGGECLLSPSVVPMIRAVKELGYAVKVDTNGGMPDRLRELIEEGLVDYVAMDFKAP 131

Query: 139 CD 140
            D
Sbjct: 132 LD 133


>gi|330985835|gb|EGH83938.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 389

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C       +  +G     +Q   +++E    G  +      +
Sbjct: 22  PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELTTEQWFKVMQEAREMGAAQ---IGFS 76

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    + GF   + T+G
Sbjct: 77  GGEPLVRQDLAELIAEARRLGFYTNLITSG 106


>gi|330891270|gb|EGH23931.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 389

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C       +  +G     +Q   +++E    G  +      +
Sbjct: 22  PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELTTEQWFKVMQEAREMGAAQ---IGFS 76

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    + GF   + T+G
Sbjct: 77  GGEPLVRQDLAELIAEARRLGFYTNLITSG 106


>gi|212695406|ref|ZP_03303534.1| hypothetical protein BACDOR_04955 [Bacteroides dorei DSM 17855]
 gi|212662041|gb|EEB22615.1| hypothetical protein BACDOR_04955 [Bacteroides dorei DSM 17855]
          Length = 348

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 14/90 (15%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR C +D   I G        +    +++      +    + ++T
Sbjct: 30  CNL-----------HCRHCGSDCKKIAG--HPDMPKEDFLRVLDSVSAQNDPHKIFVIIT 76

Query: 92  GGEPLLQVDVPLI-QALNKRGFEIAVETNG 120
           GGEPL++ D+    +A+ +RGF   + TNG
Sbjct: 77  GGEPLMRKDLEECGRAIYERGFPWGMVTNG 106


>gi|71737663|ref|YP_276810.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|83288390|sp|Q48CT3|PQQE_PSE14 RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|71558216|gb|AAZ37427.1| coenzyme PQQ biosynthesis protein E [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320326441|gb|EFW82494.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320331587|gb|EFW87525.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330872310|gb|EGH06459.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 389

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C       +  +G     +Q   +++E    G  +      +
Sbjct: 22  PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELTTEQWFKVMQEAREMGAAQ---IGFS 76

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    + GF   + T+G
Sbjct: 77  GGEPLVRQDLAELIAEARRLGFYTNLITSG 106


>gi|113473997|ref|YP_720058.1| hypothetical protein Tery_0077 [Trichodesmium erythraeum IMS101]
 gi|113473998|ref|YP_720059.1| hypothetical protein Tery_0078 [Trichodesmium erythraeum IMS101]
 gi|113473999|ref|YP_720060.1| hypothetical protein Tery_0079 [Trichodesmium erythraeum IMS101]
 gi|110165045|gb|ABG49585.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
 gi|110165046|gb|ABG49586.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
 gi|110165047|gb|ABG49587.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
          Length = 72

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
             L I+ G+EL+     + V  +  +        LQP      +    L      +    
Sbjct: 8   IKLVIETGKELEFYSKILLVKNKTPV-------FLQPESY-NRDFTLPLVQKLLREYSHC 59

Query: 199 RLSVQTHKFIGIR 211
           RLS+Q HK++GI+
Sbjct: 60  RLSIQLHKYLGIK 72


>gi|325919115|ref|ZP_08181174.1| GTP cyclohydrolase subunit MoaA [Xanthomonas gardneri ATCC 19865]
 gi|325550424|gb|EGD21219.1| GTP cyclohydrolase subunit MoaA [Xanthomonas gardneri ATCC 19865]
          Length = 344

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 16/102 (15%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
           +C +C   D            R + DQL  L+      G  + R   LTGGEPLL+ D+P
Sbjct: 36  RCGYCMPADRVPDDYGFDAQQRLSFDQLETLVRAFVSVGVTKVR---LTGGEPLLRRDLP 92

Query: 103 -LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
            L+  L    G E +A+ TNGT+   Q +         I VS
Sbjct: 93  SLVARLTAIDGIEDLALTTNGTLLARQAVALRQAGLRRITVS 134


>gi|325264173|ref|ZP_08130905.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
           D5]
 gi|324030657|gb|EGB91940.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
           D5]
          Length = 317

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 51  DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALN 108
           D  + G +   G  Y VD++ + +    I  +  G    L+GGE L+       L+Q L 
Sbjct: 108 DVCYAGARKISGHYYTVDEVYEKVIRDRIFYDTTGGGVTLSGGEVLVYWKFAAQLLQKLK 167

Query: 109 KRGFEIAVETNG 120
             G   A+ET G
Sbjct: 168 HGGIHTAIETCG 179


>gi|283131319|dbj|BAI63324.1| putative glycyl-radical activating family protein [Streptococcus
           dysgalactiae subsp. equisimilis]
          Length = 329

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
           G    + +L  +I E     +  G    L+GGE L Q +  + L++A  + G   AVET 
Sbjct: 127 GESKTISELLAIIHEDDAFYDMSGGGVTLSGGECLAQPEGAIALLRACKEDGLNTAVETA 186

Query: 120 G 120
           G
Sbjct: 187 G 187


>gi|229096672|ref|ZP_04227643.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock3-29]
 gi|228686878|gb|EEL40785.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock3-29]
          Length = 337

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 14/89 (15%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C       +D+  +Q         D++  L       G  + R   LTGGE
Sbjct: 22  DRCNFRCIYCMPAEVFGSDYAFLQEEF--LLTFDEIERLARLFISMGVNKIR---LTGGE 76

Query: 95  PLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           PLL+ D+P LI  L K  G   I + TNG
Sbjct: 77  PLLRKDLPKLIARLAKLEGLTDIGLTTNG 105


>gi|222529567|ref|YP_002573449.1| radical SAM domain-containing protein [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222456414|gb|ACM60676.1| Radical SAM domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 429

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 47/114 (41%), Gaps = 27/114 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL+           C+ C + +   +  +    +++   + +++    G  +    +++
Sbjct: 97  CNLY-----------CKGCYS-YDQNRNDESQDLSMEYFLEAVKQLKTYGLDK---IIIS 141

Query: 92  GGEPLLQVDV-PLIQALN---KRGFEIAVETNGT-------IEPPQGIDWICVS 134
           GGEP L+ D+   I+ L       + + + TNGT           + +D + VS
Sbjct: 142 GGEPTLRNDLDEFIKYLKEILDINYIVLI-TNGTNLPHNLLHTIREYVDDVAVS 194


>gi|254168362|ref|ZP_04875207.1| radical SAM domain protein, putative [Aciduliprofundum boonei T469]
 gi|289595846|ref|YP_003482542.1| glycyl-radical enzyme activating protein family [Aciduliprofundum
           boonei T469]
 gi|197622643|gb|EDY35213.1| radical SAM domain protein, putative [Aciduliprofundum boonei T469]
 gi|289533633|gb|ADD07980.1| glycyl-radical enzyme activating protein family [Aciduliprofundum
           boonei T469]
          Length = 303

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 19/134 (14%)

Query: 32  CNLWSGREQDRLSAQ-----CRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGE 82
           C        D  +       C +C   T+       +  G +  V++L   IE+     +
Sbjct: 65  CPYKLIYFDDFGAQHIERDKCTYCGICTENCPTSALEFIGRKITVEELMKEIEKDITLYD 124

Query: 83  KEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETNG--TIEPPQGI-DWICVSPK 136
             G     +GGEPL+Q +  L +AL    K G    ++T+G  + E  + I D+  +   
Sbjct: 125 SSGGGVTFSGGEPLMQPEF-LKEALIECKKIGVHTTLDTSGYASREVLESIMDYADL--- 180

Query: 137 AGCDLKIKGGQELK 150
              D+K+   +E K
Sbjct: 181 FLYDIKLYDSKEHK 194


>gi|167581126|ref|ZP_02374000.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           thailandensis TXDOH]
          Length = 370

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 23/113 (20%)

Query: 41  DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
           DR + +C +C                     ++++  L       G ++ R   +TGGEP
Sbjct: 45  DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 100

Query: 96  LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           LL+ ++  LI+ L K      R  +I + TNG++           G+  + VS
Sbjct: 101 LLRKNIEFLIERLAKMTTVDGRALDITLTTNGSLLVRKAKSLRDAGLSRVTVS 153


>gi|83721219|ref|YP_442241.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           thailandensis E264]
 gi|167619209|ref|ZP_02387840.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           thailandensis Bt4]
 gi|257138434|ref|ZP_05586696.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           thailandensis E264]
 gi|83655044|gb|ABC39107.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           thailandensis E264]
          Length = 370

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 23/113 (20%)

Query: 41  DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
           DR + +C +C                     ++++  L       G ++ R   +TGGEP
Sbjct: 45  DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 100

Query: 96  LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           LL+ ++  LI+ L K      R  +I + TNG++           G+  + VS
Sbjct: 101 LLRKNIEFLIERLAKMTTVDGRALDITLTTNGSLLVRKAKSLRDAGLSRVTVS 153


>gi|116749682|ref|YP_846369.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698746|gb|ABK17934.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 404

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 9/93 (9%)

Query: 32  CNLWSGREQDRLSAQ-CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL                 D   +  Q     RY V+ L+DL+ E          +  L
Sbjct: 65  CNLRCTTCGQWGKDGFLHGRDQKELKKQEVSLDRY-VEVLSDLVRE------GHRPFVYL 117

Query: 91  TGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
            GGEP+L    V LI+  +  G  +++ TNGT 
Sbjct: 118 WGGEPMLYEGSVELIERASMMGLPVSIATNGTH 150


>gi|284045650|ref|YP_003395990.1| molybdenum cofactor biosynthesis protein A [Conexibacter woesei DSM
           14684]
 gi|283949871|gb|ADB52615.1| molybdenum cofactor biosynthesis protein A [Conexibacter woesei DSM
           14684]
          Length = 330

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 8/84 (9%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C++C    +   G     R  +    ++     +          LTGGEPL++ 
Sbjct: 22  DRCNFRCQYC----MPADGLPWLEREEILTFEEIARLVGLLASMGVHDVRLTGGEPLVRR 77

Query: 100 DVP-LIQALNKRG--FEIAVETNG 120
           D P L++ L       ++++ TNG
Sbjct: 78  DFPRLVEMLAAIPAVHDLSITTNG 101


>gi|257483070|ref|ZP_05637111.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|289650652|ref|ZP_06481995.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|331011695|gb|EGH91751.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 389

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C       +  +G     +Q   +++E    G  +      +
Sbjct: 22  PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELTTEQWFKVMQEAREMGAAQ---IGFS 76

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    + GF   + T+G
Sbjct: 77  GGEPLVRQDLAELIAEARRLGFYTNLITSG 106


>gi|239909106|ref|YP_002955848.1| ribonucleoside-triphosphate reductase activating enzyme
           [Desulfovibrio magneticus RS-1]
 gi|239798973|dbj|BAH77962.1| ribonucleoside-triphosphate reductase activating enzyme
           [Desulfovibrio magneticus RS-1]
          Length = 221

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 25/101 (24%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY- 87
           F GCNL           +C  C              +     A  + E+ +    E R  
Sbjct: 31  FGGCNL-----------RCPHC--------HNAALAWTPQAGAAPLTEKAVRRFVEARRR 71

Query: 88  ----CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
                V+TGGEP L   +P L  A+   G  + V++NG   
Sbjct: 72  WLDGLVITGGEPTLTPGMPGLAAAVAASGLPVKVDSNGLRP 112


>gi|118576205|ref|YP_875948.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A]
 gi|118194726|gb|ABK77644.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A]
          Length = 589

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 15/142 (10%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY---NVDQLADLIEEQWITGEKEGRYCVL 90
           L +    +R    C +C   F   +G +G      ++DQ+  +++         G    +
Sbjct: 144 LANMIVTNRCDLTCWYC--FFYVKKGLEGAYMYEPSLDQVRAMMKTLRSERPIAGNSIQI 201

Query: 91  TGGEPLLQVDV-PLIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           TGGEP+L+ D+  +I+ + + G   I + TNG            + P+A  D+++ G   
Sbjct: 202 TGGEPMLRTDITDIIKIMKEEGVDHIQMNTNGIRHA--------MDPEAARDVRLAGCNN 253

Query: 149 LKLVFPQVNVSPENYIGFDFER 170
           L L F  V         ++   
Sbjct: 254 LYLSFDGVTARTNPKNHWEIPH 275


>gi|298489172|ref|ZP_07007192.1| Coenzyme PQQ synthesis protein E [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156309|gb|EFH97409.1| Coenzyme PQQ synthesis protein E [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 389

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C       +  +G     +Q   +++E    G  +      +
Sbjct: 22  PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELTTEQWFKVMQEAREMGAAQ---IGFS 76

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    + GF   + T+G
Sbjct: 77  GGEPLVRQDLAELIAEARRLGFYTNLITSG 106


>gi|318079380|ref|ZP_07986712.1| hypothetical protein SSA3_22497 [Streptomyces sp. SA3_actF]
          Length = 391

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 37/100 (37%), Gaps = 17/100 (17%)

Query: 38  REQDRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           +   R +  CR+C      DT +     T          A  I E            VL 
Sbjct: 9   KTHSRCNLACRYCYLYEGPDTSWRARPATASPEVRAHT-ARRIGEHAAAHALPAVSLVLH 67

Query: 92  GGEPLLQVDVPLIQALNK-------RGFEIA--VETNGTI 122
           GGEPLL    PL  AL +        G E+   V+TNGT+
Sbjct: 68  GGEPLLGGAGPL-AALAEQVRAAVPAGCEVHVTVQTNGTL 106


>gi|318060260|ref|ZP_07978983.1| hypothetical protein SSA3_20118 [Streptomyces sp. SA3_actG]
          Length = 415

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 37/100 (37%), Gaps = 17/100 (17%)

Query: 38  REQDRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           +   R +  CR+C      DT +     T          A  I E            VL 
Sbjct: 33  KTHSRCNLACRYCYLYEGPDTSWRARPATASPEVRAHT-ARRIGEHAAAHALPAVSLVLH 91

Query: 92  GGEPLLQVDVPLIQALNK-------RGFEIA--VETNGTI 122
           GGEPLL    PL  AL +        G E+   V+TNGT+
Sbjct: 92  GGEPLLGGAGPL-AALAEQVRAAVPAGCEVHVTVQTNGTL 130


>gi|240103873|ref|YP_002960182.1| Radical SAM protein, MoaA/nifB/pqqE family [Thermococcus
           gammatolerans EJ3]
 gi|239911427|gb|ACS34318.1| Radical SAM protein, MoaA/nifB/pqqE family [Thermococcus
           gammatolerans EJ3]
          Length = 590

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           NL +    +R +  C +C   F   +G       ++Q+  ++                TG
Sbjct: 139 NLLNIVLTNRCNLSCWYC--FFYAREGQPIYEPTLEQIRMMLRNAKKEYPIGANAVQFTG 196

Query: 93  GEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
           GEP L+ D+  +I+   + G+  + + T+G
Sbjct: 197 GEPTLRDDLIEIIKIAKEEGYDHVQLNTDG 226


>gi|227827328|ref|YP_002829107.1| radical SAM protein [Sulfolobus islandicus M.14.25]
 gi|227459123|gb|ACP37809.1| Radical SAM domain protein [Sulfolobus islandicus M.14.25]
          Length = 378

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            + +     + + +C  C   ++            ++   LI+E     E +    +++G
Sbjct: 36  PVVTWNLTRKCNLKCLHC---YINASPESEDGSTTEEALRLIDEM---AEMKIPLIIMSG 89

Query: 93  GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GEPL++ D   L      +G ++A+ TNGT+
Sbjct: 90  GEPLMRRDFFELASYARIKGIKLALSTNGTL 120


>gi|319937834|ref|ZP_08012236.1| pyruvate formate-lyase 2-activating enzyme [Coprobacillus sp. 29_1]
 gi|319807064|gb|EFW03680.1| pyruvate formate-lyase 2-activating enzyme [Coprobacillus sp. 29_1]
          Length = 298

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           +G    +D++     +     E+      ++GGE + Q D    L+  L   G  +A+ET
Sbjct: 102 EGEYKEIDEIVKTCLQDKDFYEESDGGVTISGGEGMSQPDFVKALVNKLKDEGIHVAIET 161

Query: 119 NGTIEP 124
            G I+P
Sbjct: 162 TGYIQP 167


>gi|260438619|ref|ZP_05792435.1| pyruvate formate-lyase 1-activating enzyme [Butyrivibrio crossotus
           DSM 2876]
 gi|292809213|gb|EFF68418.1| pyruvate formate-lyase 1-activating enzyme [Butyrivibrio crossotus
           DSM 2876]
          Length = 256

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 19/100 (19%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ---WITG 81
           VF    GC             +C+FC           G  +  + L          W+  
Sbjct: 23  VF--LQGC-----------RMRCKFCHNPETWSM-DGGEMWTPEDLFKRAYRYKPYWMRN 68

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
            K      ++GGEPLLQ++      +    +G    ++T+
Sbjct: 69  GKLNGGITVSGGEPLLQIEFVTEFFKLAKAKGVHTTLDTS 108


>gi|149917556|ref|ZP_01906053.1| nitrite reductase [Plesiocystis pacifica SIR-1]
 gi|149821619|gb|EDM81017.1| nitrite reductase [Plesiocystis pacifica SIR-1]
          Length = 402

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 30/164 (18%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQ 105
           C FC         T    +  + +  L+++    G       +LTGGEP L  ++P + +
Sbjct: 17  CGFC------SNPTTPYTHTFESMKVLVDDFVERGYFG---VILTGGEPSLHPELPEICR 67

Query: 106 ALNKRGFEIAVETNGTI---------EPPQGIDWICVSPKAGCDLKIKGGQELK-----L 151
               +G  + + TNGT              G+  + VS      L  +   EL+     L
Sbjct: 68  YATDQGLHVRMITNGTRLAKKAFAKEMAEAGLKLVHVS---IYSLIEEVEDELRGTPGTL 124

Query: 152 VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
                 +   N  G D     +         ++ +L I Y  ++
Sbjct: 125 PVALQALDNANEFGIDVNINCVI---NKLNADHLDLNIRYFLEH 165


>gi|313897775|ref|ZP_07831316.1| pyruvate formate-lyase 1-activating enzyme [Clostridium sp. HGF2]
 gi|312957310|gb|EFR38937.1| pyruvate formate-lyase 1-activating enzyme [Clostridium sp. HGF2]
          Length = 246

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 27/118 (22%)

Query: 8   EIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
           E F ++ G G        +F    GC           + +C++C          K G  +
Sbjct: 11  ETFGSVDGPGVRFV----IF--LKGC-----------AMRCQYC----HNPDTWKCGEPD 49

Query: 67  VDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
            D    L++         G+     ++GGEPLLQ+D  + L Q   K      ++T G
Sbjct: 50  TDS-EALLKRAMRYRSYWGKNGGITVSGGEPLLQIDFLLDLFQKAKKENIHTVLDTAG 106


>gi|302348326|ref|YP_003815964.1| Predicted Fe-S oxidoreductase [Acidilobus saccharovorans 345-15]
 gi|302328738|gb|ADL18933.1| Predicted Fe-S oxidoreductase [Acidilobus saccharovorans 345-15]
          Length = 514

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 34/165 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   +            +++   +++E    G        L+
Sbjct: 153 CNL-----------RCIHC---YQRAGAPTPDELTLEEKLRVVDELDRAGVAS---IALS 195

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
           GGEP +      +++A+  RG   AV TNG         W+          +++  +E  
Sbjct: 196 GGEPTIHPHFHAVLKAIASRGIHAAVATNG---------WV-----FANINELEKAKEEG 241

Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
           L + +V++   +    D  +F   P       +    A+     +
Sbjct: 242 LKYVEVSIDSASPEKHD--KFRGVPGSWERAVKALENAVKLGMDH 284


>gi|187927999|ref|YP_001898486.1| molybdenum cofactor biosynthesis protein A [Ralstonia pickettii
           12J]
 gi|187724889|gb|ACD26054.1| molybdenum cofactor biosynthesis protein A [Ralstonia pickettii
           12J]
          Length = 373

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 25/136 (18%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  ++ +     + +++  +       G ++ R   LTGGE
Sbjct: 52  DRCNFRCVYCMPKDVFDKDYRFLRHS--ELLSFEEIERMARLFIEHGVEKIR---LTGGE 106

Query: 95  PLLQVDVP-LIQALN----KRGFE--IAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ D+  L++ L       G    + + TNG +           G+  + VS     D
Sbjct: 107 PLLRKDIERLVEMLARLTTAEGKPLDLTLTTNGALLARKAQSLKDAGLTRVTVSLDGIDD 166

Query: 141 LKIKGGQELKLVFPQV 156
              +   ++     +V
Sbjct: 167 ATFRRMNDVDFAVGEV 182


>gi|113473996|ref|YP_720057.1| hypothetical protein Tery_0076 [Trichodesmium erythraeum IMS101]
 gi|110165044|gb|ABG49584.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
          Length = 72

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
             L I+ G+EL+     + V  +  +        LQP      +    L      +    
Sbjct: 8   IKLVIETGKELEFYSKILLVKNKTPV-------FLQPESY-NRDFTLPLVQKLLQEYSHC 59

Query: 199 RLSVQTHKFIGIR 211
           RLS+Q HK++GI+
Sbjct: 60  RLSIQLHKYLGIK 72


>gi|258544998|ref|ZP_05705232.1| pyruvate formate-lyase 1-activating enzyme [Cardiobacterium hominis
           ATCC 15826]
 gi|258519801|gb|EEV88660.1| pyruvate formate-lyase 1-activating enzyme [Cardiobacterium hominis
           ATCC 15826]
          Length = 247

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C +C   DT    ++  K  +  VD+L   + +     
Sbjct: 24  VF--TQGC-----------LMRCLYCHNRDT--WDMETDKSRKITVDELMQQVIQYRFYL 68

Query: 82  EKEGRYCVLTGGEPLLQVDVPLIQ----ALNKRGFEIAVETNG 120
           +  G     +GGE LLQ     I+    A    G    ++TNG
Sbjct: 69  KATGGGVTASGGESLLQP--EFIRDWFVACKAYGIHTCLDTNG 109


>gi|258514870|ref|YP_003191092.1| Radical SAM domain-containing protein [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778575|gb|ACV62469.1| Radical SAM domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 307

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 44  SAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VD 100
           + +C F CD  FV     + G  ++ QL +++ +    G  E  +    GGEP L   V 
Sbjct: 11  TYRCTFECDHCFVWGSPWQSGTLSLKQLREILRQAEAVGSLE--WIYFEGGEPFLFYPVL 68

Query: 101 VPLIQALNKRGFEIAVETNG 120
           +  ++  +  GF + + TNG
Sbjct: 69  LEAVREASAAGFRVGIVTNG 88


>gi|163751863|ref|ZP_02159078.1| pyruvate formate-lyase 1 activating enzyme [Shewanella benthica
           KT99]
 gi|161328279|gb|EDP99441.1| pyruvate formate-lyase 1 activating enzyme [Shewanella benthica
           KT99]
          Length = 220

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 20/96 (20%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            GC             +C++C   DT         G    V +L + I       E  G 
Sbjct: 2   QGC-----------LMRCQYCHNRDT----WDLHGGQEVEVKELMEQIISYRPFLEASGG 46

Query: 87  YCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
               +GGE +LQ +    L     + G    ++TNG
Sbjct: 47  GVTASGGEAILQAEFVSALFAECKQEGIHTCLDTNG 82


>gi|126178829|ref|YP_001046794.1| radical SAM domain-containing protein [Methanoculleus marisnigri
           JR1]
 gi|125861623|gb|ABN56812.1| Radical SAM domain protein [Methanoculleus marisnigri JR1]
          Length = 349

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L S     R + +C  C  D     G      +  +   LI++    G       +L+GG
Sbjct: 15  LISWNVTYRCNLRCAHCYMD--AGDGGGALELSTSEAKMLIDQVKQAG---SPVLILSGG 69

Query: 94  EPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           EPLL+ D+  + +   +RG  +A+ TNGT+
Sbjct: 70  EPLLRDDIFEIAEYGTQRGLRMAIGTNGTL 99


>gi|91223182|ref|ZP_01258448.1| putative pyruvate formate-lyase 3 activating enzyme [Vibrio
           alginolyticus 12G01]
 gi|91191995|gb|EAS78258.1| putative pyruvate formate-lyase 3 activating enzyme [Vibrio
           alginolyticus 12G01]
          Length = 354

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           G     D L D + +     ++       +GGEPL+Q D+   L Q L+      A+E+ 
Sbjct: 155 GEEAKSDMLFDTLMKDKPFYDQSQGGVTFSGGEPLMQADLVAELAQRLHDNQVSTAIESC 214

Query: 120 GTIEP 124
             +  
Sbjct: 215 MHVPW 219


>gi|46395076|gb|AAS91673.1| conserved hypothetical protein [Clostridium beijerinckii]
          Length = 327

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 33/131 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   +        G  N ++   LI++     +   +  + +
Sbjct: 11  CNL-----------KCSHC---YRDSGKESQGELNTEEAKLLIDQ---IAKANFKIMIFS 53

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ-------------GIDWICVSPKA 137
           GGEPL++ D+  LI   +K G    + TNGT+   +             GI    + PK 
Sbjct: 54  GGEPLMREDIFELINYASKAGLRPVLGTNGTLISREMAEKLKAAGISAIGISLDSLDPKK 113

Query: 138 GCDLKIKGGQE 148
               K +G  E
Sbjct: 114 HN--KFRGNNE 122


>gi|57021069|gb|AAW32935.1| PFL activating enzyme [Chlamydomonas reinhardtii]
          Length = 336

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 63/186 (33%), Gaps = 34/186 (18%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC           + +C FC   DT         G + +  ++A  I+      
Sbjct: 115 VFV--QGC-----------AMRCLFCSNPDT----WTLKGGNKTSSKEIAADIKRVRNYL 157

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET--NGTIE-----PPQGIDWIC 132
           +  G    ++GGE +LQ      + Q ++  G    V+T   GT            D + 
Sbjct: 158 KPRGG-ITISGGEAMLQPHFVSTVFQEVHALGLNTTVDTTGQGTKAGNWDVVLPHTDLVL 216

Query: 133 VSPKAGCDLKIKG--GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAIS 190
              K    +K +   G + +      +   E  I F      + P     +++   L I 
Sbjct: 217 FCIKHIDPIKYEALTGMKQRGALRFADQLAERKIPFYLRYVYI-PGYTDGVKDIDKL-IE 274

Query: 191 YCFQNP 196
           +C Q P
Sbjct: 275 WCKQQP 280


>gi|254521757|ref|ZP_05133812.1| molybdenum cofactor biosynthesis protein A [Stenotrophomonas sp.
           SKA14]
 gi|219719348|gb|EED37873.1| molybdenum cofactor biosynthesis protein A [Stenotrophomonas sp.
           SKA14]
          Length = 326

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 13/91 (14%)

Query: 46  QCRFC--DTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
           +C +C  D    G Q     R+  VD++A L+      G  + R   LTGGEP L+ D+ 
Sbjct: 26  RCSYCLPD----GYQADGRPRFLQVDEIARLVRAFAALGMSKIR---LTGGEPSLRKDLD 78

Query: 103 LIQALNKR--GFE-IAVETNGTIEPPQGIDW 130
            I A      G   +A+ TNGT+ P +   W
Sbjct: 79  EIIATVAAVPGIRKVAITTNGTLLPRRLPGW 109


>gi|154174160|ref|YP_001409198.1| radical SAM family protein [Campylobacter curvus 525.92]
 gi|112803526|gb|EAU00870.1| radical SAM [Campylobacter curvus 525.92]
          Length = 417

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 61/159 (38%), Gaps = 31/159 (19%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           CR +G +  S     + +  C FC     D      +     ++   Q+A+ I    +  
Sbjct: 62  CR-TGVDTHSVYLSLKCNKNCYFCFNPNQD----DFKKDVKRKFAAKQIANKI----LKN 112

Query: 82  EKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIA--VETNGTIEPPQGIDWICVSPKA 137
            +  ++  LTGGEPLL  D  L   + +N+    I   + TNGT+     ID      K 
Sbjct: 113 NQNVKFVALTGGEPLLYKDDALEFFKIINESNTTIHKRLYTNGTL-----IDT-----KY 162

Query: 138 GCDLKIKGGQELKL---VFPQVNVSPENYIGFDFERFSL 173
              LK  G  E++    +   +N   +     +  +  +
Sbjct: 163 LKKLKSSGLDEIRFSIKLEDSLNEQADIIEKIEDAKHYI 201


>gi|313896785|ref|ZP_07830333.1| molybdenum cofactor biosynthesis protein A [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312974702|gb|EFR40169.1| molybdenum cofactor biosynthesis protein A [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 332

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 24/113 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR+C     G++       ++    +++ +         R   LT
Sbjct: 20  CNL-----------RCRYC-MPAHGVKKLAHE--DILSYEEILRDVRALAALGIRKVRLT 65

Query: 92  GGEPLLQVDV-PLIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134
           GGEPL++ D+  L++ L +  G E +AV TNG +           G+D + +S
Sbjct: 66  GGEPLVRRDIVTLVRGLKEIPGIETVAVTTNGVLLGAMLDDLVAAGLDAVNLS 118


>gi|229031224|ref|ZP_04187231.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1271]
 gi|228730091|gb|EEL81064.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1271]
          Length = 338

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  +  +  +     + D++  +       G ++ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGPD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ LNK  G E I + TNG++     +D        + VS
Sbjct: 75  GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFALDLYKAGLSRVTVS 126


>gi|119720086|ref|YP_920581.1| radical SAM domain-containing protein [Thermofilum pendens Hrk 5]
 gi|119525206|gb|ABL78578.1| Radical SAM domain protein [Thermofilum pendens Hrk 5]
          Length = 418

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C            G  + +    +IE       K+ R  V T
Sbjct: 74  CNL-----------RCAHC---HASAGRPYPGELDTEGAKRVIESLTTV--KDFRTLVFT 117

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPL++ D+  L +     GF +   TNG +
Sbjct: 118 GGEPLVRKDIWELTRHAVDLGFGVVFATNGVL 149


>gi|85857996|ref|YP_460198.1| molybdenum cofactor biosynthesis protein A [Syntrophus
           aciditrophicus SB]
 gi|85721087|gb|ABC76030.1| molybdenum cofactor biosynthesis protein A [Syntrophus
           aciditrophicus SB]
          Length = 329

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 23/156 (14%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           N       DR + +CR+C    +  +G +K     +  L D++    +      R   LT
Sbjct: 13  NYLRISVTDRCNLRCRYC----MPEEGISKLDHREILSLEDIVRSVKVAAGVGIRKIRLT 68

Query: 92  GGEPLLQVDVP----LIQALNKRGFEIAVETNGTIEPP-------QGIDWICVSPKAGCD 140
           GGEPL++ D+      I  + +   +IA+ TNG +           G+D +  S      
Sbjct: 69  GGEPLVRKDIARLIGFISEVPEID-DIAMTTNGVLFADMAEQLKAAGLDRVNFS------ 121

Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
           +     ++ + +  + +++      F      L+P+
Sbjct: 122 MDTMVSEKFRYISRRDHLADVRKAIFKALELGLEPV 157


>gi|77461382|ref|YP_350889.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           fluorescens Pf0-1]
 gi|77385385|gb|ABA76898.1| coenzyme PQQ synthesis protein E [Pseudomonas fluorescens Pf0-1]
          Length = 379

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C          +G   + +Q   +  E    G  +  +   +
Sbjct: 13  PLWLLAELTYRCPLQCPYCSNPLDF--AEQGKELSTEQWIKVFREAREMGAAQLGF---S 67

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI+   + GF   + T+G
Sbjct: 68  GGEPLVRQDLAELIREARQLGFYTNLITSG 97


>gi|328954834|ref|YP_004372167.1| glycyl-radical enzyme activating protein family [Coriobacterium
           glomerans PW2]
 gi|328455158|gb|AEB06352.1| glycyl-radical enzyme activating protein family [Coriobacterium
           glomerans PW2]
          Length = 298

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           G   +  ++ ++  +  +  ++ G    L+GGEPL+  +  + L+  L+    +  +ET
Sbjct: 103 GRLRSAAEVCEICLKDDVFYQQSGGGVTLSGGEPLMWPEFCIELMNLLHSHSVDTCIET 161


>gi|309389587|gb|ADO77467.1| Radical SAM domain protein [Halanaerobium praevalens DSM 2228]
          Length = 391

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 8/97 (8%)

Query: 28  RFS-GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           R   G  + +     + +  C+ C ++   I+  K    N  +   LI++     + +  
Sbjct: 32  RLGMG-PVIAWNINSQCNLNCKHCYSNSNQIK--KKTTLNTKEALKLIDQL---ADFKVP 85

Query: 87  YCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
             +L+GGEPLL+ D+  LI+    R   + + TNGT+
Sbjct: 86  VLLLSGGEPLLRKDLVKLIEKAKSRNLRVVISTNGTL 122


>gi|304313911|ref|YP_003849058.1| molybdopterin cofactor biosynthesis protein A [Methanothermobacter
           marburgensis str. Marburg]
 gi|313104133|sp|Q50746|MOAA_METTM RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|302587370|gb|ADL57745.1| predicted molybdopterin cofactor biosynthesis protein A
           [Methanothermobacter marburgensis str. Marburg]
          Length = 305

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 15/102 (14%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R +  C +C               + + + ++       G K+ R   L+GGEPL++ D+
Sbjct: 21  RCNVSCIYC---HRDGILRSDEEMSPEDIENICRVASDLGVKKIR---LSGGEPLIRDDI 74

Query: 102 -PLIQALNKRGFE-IAVETNGT----IEPP---QGIDWICVS 134
             +++ +N  GF  I++ TNGT    +  P    G+D + VS
Sbjct: 75  VEIVEKINSIGFRDISITTNGTLLEDLSVPLRDAGLDRVNVS 116


>gi|301155020|emb|CBW14483.1| unnamed protein product [Haemophilus parainfluenzae T3T1]
          Length = 57

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 180 FLEENTNL-AISYCFQNPKWRLSVQTHKFIGIR 211
            LE  T L  ++      KW+LS+QTHK IGI 
Sbjct: 25  LLETITQLGQLNLRANKLKWQLSLQTHKIIGIE 57


>gi|224541633|ref|ZP_03682172.1| hypothetical protein CATMIT_00805 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525424|gb|EEF94529.1| hypothetical protein CATMIT_00805 [Catenibacterium mitsuokai DSM
           15897]
          Length = 372

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 13/92 (14%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN+        L+            ++   G  +   +  ++ ++     E    + +LT
Sbjct: 35  CNMNCDMCYVHLT---------HKQLEEAGGRIHTGKEWLEIGKQMV---ENGTLFLLLT 82

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL  D   +   L K G  I + TN T+
Sbjct: 83  GGEPLLHPDFKEIYLGLKKMGIVITINTNATL 114


>gi|170700217|ref|ZP_02891233.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
           IOP40-10]
 gi|170134850|gb|EDT03162.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
           IOP40-10]
          Length = 370

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 36/161 (22%)

Query: 28  RFSGCNLWSGREQ--DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           RF+   L   R    DR + +C +C      D ++  +  +       +++ + +   ++
Sbjct: 31  RFAR-PLRDLRISVTDRCNFRCVYCMPRDVFDKNYPFLPHS--ALLTHEEI-ERVARLFV 86

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------P 125
               E     +TGGEPLL+ ++  LI+ L +      R  ++ + TNG++          
Sbjct: 87  AHGVEK--IRITGGEPLLRKNLEFLIERLARLTTHDGRPLDLTLTTNGSLLARKARALKD 144

Query: 126 QGIDWICVS--------PKAGCDLKIKGGQELKLVFPQVNV 158
            G+  + VS         K   D        L  +F    V
Sbjct: 145 AGLTRVTVSLDALDDTLFKRMNDADFASADVLDGIFAAQAV 185


>gi|118576201|ref|YP_875944.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A]
 gi|118194722|gb|ABK77640.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A]
          Length = 554

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 15/142 (10%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY---NVDQLADLIEEQWITGEKEGRYCVL 90
           L +    +R    C +C   F   +G +G      ++DQ+  +++         G    +
Sbjct: 109 LANMIVTNRCDLTCWYC--FFYVKKGLEGAYMYEPSLDQVRAMMKTLRSERPIAGNSIQI 166

Query: 91  TGGEPLLQVDV-PLIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           TGGEP+L+ D+  +I+ + + G   I + TNG            + P+A  D+++ G   
Sbjct: 167 TGGEPMLRTDITDIIKIMKEEGVDHIQMNTNGIRHA--------MDPEAARDVRLAGCNN 218

Query: 149 LKLVFPQVNVSPENYIGFDFER 170
           L L F  V         ++   
Sbjct: 219 LYLSFDGVTARTNPKNHWEIPH 240


>gi|325577286|ref|ZP_08147770.1| pyruvate formate-lyase activating enzyme [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160868|gb|EGC72989.1| pyruvate formate-lyase activating enzyme [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 256

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G   +V++L   +     
Sbjct: 31  IRFILFMQGC-----------LMRCKYCHNRDT----WDLEGGREISVEELMKEVVSYRH 75

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                G     +GGE +LQ +      +A    G    ++TNG
Sbjct: 76  FMNATGGGVTASGGEAVLQAEFVRDWFRACKAEGINTCLDTNG 118


>gi|313897031|ref|ZP_07830578.1| putative heme d1 biosynthesis radical SAM protein NirJ1
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974478|gb|EFR39946.1| putative heme d1 biosynthesis radical SAM protein NirJ1
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 396

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +CR C   ++   G K  G    ++    I+      +      + 
Sbjct: 47  CNL-----------RCRHC---YMESDGQKYAGELTTEEAKRFID---GLADFRVPVLLF 89

Query: 91  TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           +GGEPL++ D   L      RG    + TNGT+
Sbjct: 90  SGGEPLIRPDFFELAAYARDRGVRPTLSTNGTL 122


>gi|57642080|ref|YP_184558.1| hypothetical protein TK2145 [Thermococcus kodakarensis KOD1]
 gi|57160404|dbj|BAD86334.1| hypothetical protein, conserved, radical SAM superfamily
           [Thermococcus kodakarensis KOD1]
          Length = 590

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           NL +    +R +  C +C   F   +G       ++Q+  ++                TG
Sbjct: 139 NLLNIVLTNRCNLSCWYC--FFYAREGQPIYEPTLEQIRMMLRNAKKEHPIGANAVQFTG 196

Query: 93  GEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
           GEP L+ D+  +I+   + G+  + + T+G
Sbjct: 197 GEPTLRDDLIEIIRIAKEEGYDHVQLNTDG 226


>gi|330979897|gb|EGH78197.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 389

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C       +  +G   + +Q   +++E    G  +      +
Sbjct: 22  PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELSTEQWFKVMQEAREMGAAQ---IGFS 76

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    + GF   + T+G
Sbjct: 77  GGEPLVRQDLAELIAEARRLGFYTNLITSG 106


>gi|330954903|gb|EGH55163.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae Cit 7]
          Length = 389

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C       +  +G   + +Q   +++E    G  +      +
Sbjct: 22  PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELSTEQWFKVMQEAREMGAAQ---IGFS 76

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    + GF   + T+G
Sbjct: 77  GGEPLVRQDLAELIAEARRLGFYTNLITSG 106


>gi|325291166|ref|YP_004267347.1| GTP cyclohydrolase subunit MoaA [Syntrophobotulus glycolicus DSM
           8271]
 gi|324966567|gb|ADY57346.1| GTP cyclohydrolase subunit MoaA [Syntrophobotulus glycolicus DSM
           8271]
          Length = 318

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 25/98 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +    +       +++++ ++ +     G ++ R   LT
Sbjct: 20  CNL-----------RCKYCRPEAGIKKKAHEDILSLEEIENISKAAVEIGIRKIR---LT 65

Query: 92  GGEPL-----LQVDVPL--IQALNKRGFEIAVETNGTI 122
           GGEPL     LQ+   L  I+ L   G      TNGT+
Sbjct: 66  GGEPLVRKGILQLITRLSRIKGLEDLGLT----TNGTL 99


>gi|309781163|ref|ZP_07675900.1| molybdenum cofactor biosynthesis protein A [Ralstonia sp.
           5_7_47FAA]
 gi|308919984|gb|EFP65644.1| molybdenum cofactor biosynthesis protein A [Ralstonia sp.
           5_7_47FAA]
          Length = 373

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 25/136 (18%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  ++ +     + +++  +       G ++ R   LTGGE
Sbjct: 52  DRCNFRCVYCMPKDVFDKDYRFLRHS--ELLSFEEIERMARLFIEHGVEKIR---LTGGE 106

Query: 95  PLLQVDVP-LIQALN----KRGFE--IAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ D+  L++ L       G    + + TNG +           G+  + VS     D
Sbjct: 107 PLLRKDIERLVEKLARLTTAEGKPLDLTLTTNGALLARKAQSLKDAGLSRVTVSLDGIDD 166

Query: 141 LKIKGGQELKLVFPQV 156
              +   ++     +V
Sbjct: 167 ATFRRMNDVDFAVSEV 182


>gi|259046654|ref|ZP_05737055.1| pyruvate formate-lyase 1-activating enzyme [Granulicatella adiacens
           ATCC 49175]
 gi|259036819|gb|EEW38074.1| pyruvate formate-lyase 1-activating enzyme [Granulicatella adiacens
           ATCC 49175]
          Length = 254

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 37/131 (28%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +C FC   DT  +G   
Sbjct: 13  TESFGSVDGPG---------IRFVTFMQGC-----------RMRCEFCHNPDTWNIG--- 49

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117
             G      +L D   +      ++G    ++GGEPLLQ+D  +   +   K G    ++
Sbjct: 50  -GGHPITSQELLDQALQYRAFWGRKGG-VTVSGGEPLLQIDFLIDFFKRCKKAGVHTTLD 107

Query: 118 TNG---TIEPP 125
           + G   T + P
Sbjct: 108 SCGMPFTYDEP 118


>gi|167570715|ref|ZP_02363589.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           oklahomensis C6786]
          Length = 363

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 23/113 (20%)

Query: 41  DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
           DR + +C +C                     ++++  L       G ++ R   +TGGEP
Sbjct: 38  DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 93

Query: 96  LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           LL+ ++  LI+ L +      R  +I + TNG++           G+  + VS
Sbjct: 94  LLRKNIEFLIERLARMTTVAGRPLDITLTTNGSLLVRKAKSLRDAGLSRVTVS 146


>gi|167563554|ref|ZP_02356470.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           oklahomensis EO147]
          Length = 370

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 23/113 (20%)

Query: 41  DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
           DR + +C +C                     ++++  L       G ++ R   +TGGEP
Sbjct: 45  DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 100

Query: 96  LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           LL+ ++  LI+ L +      R  +I + TNG++           G+  + VS
Sbjct: 101 LLRKNIEFLIERLARMTTVAGRPLDITLTTNGSLLVRKAKSLRDAGLSRVTVS 153


>gi|46579270|ref|YP_010078.1| radical SAM domain-containing protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603169|ref|YP_967569.1| radical SAM domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|46448684|gb|AAS95337.1| radical SAM domain protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563398|gb|ABM29142.1| Radical SAM domain protein [Desulfovibrio vulgaris DP4]
 gi|311233097|gb|ADP85951.1| Radical SAM domain protein [Desulfovibrio vulgaris RCH1]
          Length = 393

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            +       R + +C  C   +   +        + +Q   +I++     +      + +
Sbjct: 40  PVVVWNMTRRCNLKCVHC---YAKAVDPEGKDEISTEQAKTIIDDL---AQYGAPVMLFS 93

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122
           GGEPL+ Q  V L +    RG    + TNGT+
Sbjct: 94  GGEPLVRQDLVELAKHATGRGMRAVISTNGTL 125


>gi|66047898|ref|YP_237739.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. syringae B728a]
 gi|75500308|sp|Q4ZMC1|PQQE_PSEU2 RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|63258605|gb|AAY39701.1| Radical SAM [Pseudomonas syringae pv. syringae B728a]
          Length = 389

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C       +  +G   + +Q   +++E    G  +      +
Sbjct: 22  PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELSTEQWFKVMQEAREMGAAQ---IGFS 76

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    + GF   + T+G
Sbjct: 77  GGEPLVRQDLAELIAEARRLGFYTNLITSG 106


>gi|302348233|ref|YP_003815871.1| radical SAM domain protein [Acidilobus saccharovorans 345-15]
 gi|302328645|gb|ADL18840.1| radical SAM domain protein [Acidilobus saccharovorans 345-15]
          Length = 260

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 50/147 (34%), Gaps = 24/147 (16%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GC+L            C FC +       + G      Q  + I    I   K      L
Sbjct: 50  GCDL-----------SCGFCWSWRFRDNISLGKFMTPQQAFNAI--YSIAKSKGFTQVRL 96

Query: 91  TGGEPLL--QVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           +G EP +  +  + LI+  ++RG    +ETNG +        I   P    DL       
Sbjct: 97  SGAEPTISRRHLLDLIELFDERGITFVLETNGLL--------IGNDPSYAKDLAAHPNVV 148

Query: 149 LKLVFPQVNVSP-ENYIGFDFERFSLQ 174
           +++ F   N        G   E F LQ
Sbjct: 149 VRVSFKGTNAEEFHRLTGARAEFFELQ 175


>gi|212704786|ref|ZP_03312914.1| hypothetical protein DESPIG_02850 [Desulfovibrio piger ATCC 29098]
 gi|212671748|gb|EEB32231.1| hypothetical protein DESPIG_02850 [Desulfovibrio piger ATCC 29098]
          Length = 332

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119
           G  Y V +   + +E  +   + G    ++GGEPLLQ +    L++   +R  +  +ET 
Sbjct: 133 GKPYTVAEALKVAQEDAMFYARSGGGMTISGGEPLLQSEFALNLLRLARERRVKTCIETC 192

Query: 120 GTIE 123
           G + 
Sbjct: 193 GLVP 196


>gi|190574699|ref|YP_001972544.1| putative molybdenum cofactor biosynthesis protein A
           [Stenotrophomonas maltophilia K279a]
 gi|226707389|sp|B2FUM0|MOAA_STRMK RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|190012621|emb|CAQ46249.1| putative molybdenum cofactor biosynthesis protein A
           [Stenotrophomonas maltophilia K279a]
          Length = 326

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 13/91 (14%)

Query: 46  QCRFC--DTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
           +C +C  D    G Q     R+  VD++A L+      G  + R   LTGGEP L+ D+ 
Sbjct: 26  RCSYCLPD----GYQADGRPRFLQVDEIARLVRAFAALGMSKIR---LTGGEPSLRKDLD 78

Query: 103 LIQALNKR--GFE-IAVETNGTIEPPQGIDW 130
            I A      G   +A+ TNGT+ P +   W
Sbjct: 79  EIIATVAAVPGIRKVAITTNGTLLPRRLPGW 109


>gi|299770205|ref|YP_003732231.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
           sp. DR1]
 gi|298700293|gb|ADI90858.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
           sp. DR1]
          Length = 384

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 59/174 (33%), Gaps = 20/174 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    D+   +          +  D+ ++    G  +  +  
Sbjct: 8   PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFDVFDQARQMGAVQLGF-- 61

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140
            +GGEPL+ Q    L+   +++GF   + T+G              G+D I VS +A   
Sbjct: 62  -SGGEPLVRQDLEQLVAHAHQQGFYTNLITSGMGLTEQRIADLKQAGLDHIQVSFQASDP 120

Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
           +        K  F Q          +D+    L  +      +     I  C +
Sbjct: 121 VVNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIEQIIELCLE 173


>gi|269960306|ref|ZP_06174680.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834917|gb|EEZ89002.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 313

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           G     D L D + +     ++       +GGEPL+Q D+   L Q L+      A+E+ 
Sbjct: 114 GEEAKSDMLFDTLMKDKPFYDQSQGGVTFSGGEPLMQADLVAELAQRLHDNQVSTAIESC 173

Query: 120 GTIEP 124
             +  
Sbjct: 174 MHVPW 178


>gi|206896250|ref|YP_002247794.1| radical SAM domain protein [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738867|gb|ACI17945.1| radical SAM domain protein [Coprothermobacter proteolyticus DSM
           5265]
          Length = 312

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 13/103 (12%)

Query: 44  SAQCRFCD---TDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           S  C +C    T  + ++ T     +   D++   +E    T +      ++  GEP L 
Sbjct: 27  SYNCVYCQVGRTLHMQVKRTLYSNPSEVFDEVKKKVERIGETQQNVDYISIVPDGEPTLD 86

Query: 99  VDV-PLIQALNKRGFEIAVETNGTIEPPQGI-------DWICV 133
             +  LI+ L   G  +AV TN ++   + +       DW+ V
Sbjct: 87  SSLGELIERLKDLGLPVAVITNSSLTWDKSVQEDLKKADWVSV 129


>gi|171317149|ref|ZP_02906351.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
           MEX-5]
 gi|171097716|gb|EDT42546.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
           MEX-5]
          Length = 370

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 36/161 (22%)

Query: 28  RFSGCNLWSGREQ--DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           RF+   L   R    DR + +C +C      D ++  +  +       +++ + +   ++
Sbjct: 31  RFAR-PLHDLRISVTDRCNFRCVYCMPRDVFDKNYPFLPHS--ALLTHEEI-ERVARLFV 86

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------P 125
               E     +TGGEPLL+ ++  LI+ L +      R  ++ + TNG++          
Sbjct: 87  AHGVEK--IRITGGEPLLRKNLEFLIERLARLTTHEGRPLDLTLTTNGSLLARKARALKD 144

Query: 126 QGIDWICVS--------PKAGCDLKIKGGQELKLVFPQVNV 158
            G+  + VS         K   D        L  +F    V
Sbjct: 145 AGLTRVTVSLDALDDTLFKRMNDADFASADVLDGIFAAQAV 185


>gi|293608090|ref|ZP_06690393.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|130795|sp|P07782|PQQE_ACICA RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Coenzyme PQQ synthesis protein III; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|38745|emb|CAA29756.1| III protein [Acinetobacter calcoaceticus]
 gi|292828663|gb|EFF87025.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 384

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 59/174 (33%), Gaps = 20/174 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    D+   +          +  D+ ++    G  +  +  
Sbjct: 8   PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFDVFDQARQMGAVQLGF-- 61

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140
            +GGEPL+ Q    L+   +++GF   + T+G              G+D I VS +A   
Sbjct: 62  -SGGEPLVRQDLEQLVAHAHQQGFYTNLITSGMGLTEQRIADLKQAGLDHIQVSFQASDP 120

Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
           +        K  F Q          +D+    L  +      +     I  C +
Sbjct: 121 VVNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIEQIIELCLE 173


>gi|307710845|ref|ZP_07647272.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis
           SK321]
 gi|307617290|gb|EFN96463.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis
           SK321]
          Length = 264

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 26/118 (22%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        VF    GC++           +C++C   DT +        
Sbjct: 18  TESFGSVDGPGIRFI----VF--LQGCHM-----------RCQYCHNPDT-WAMESNKSR 59

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
            R   D L + +  +   G K G    ++GGE LLQ+D  + L     ++G    ++T
Sbjct: 60  ERTVDDVLTEALRYRGFWGNKGG--ITVSGGEALLQIDFLIALFTKAKEQGIHCTLDT 115


>gi|304406819|ref|ZP_07388474.1| molybdenum cofactor biosynthesis protein A [Paenibacillus
           curdlanolyticus YK9]
 gi|304344352|gb|EFM10191.1| molybdenum cofactor biosynthesis protein A [Paenibacillus
           curdlanolyticus YK9]
          Length = 333

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 8/92 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           N       DR + +C +C     G+Q T      + D + +L++     G  + R   +T
Sbjct: 13  NYLRISVTDRCNLRCVYC-MPEEGVQFTDTSNLLSYDHIVELVQSAASLGVTKLR---IT 68

Query: 92  GGEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           GGEPL++  +  LI  L++  G   IA+ TNG
Sbjct: 69  GGEPLVRPGLDGLISRLSRIPGISDIALTTNG 100


>gi|302186015|ref|ZP_07262688.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. syringae 642]
          Length = 389

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C       +  +G   + +Q   +++E    G  +      +
Sbjct: 22  PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELSTEQWFKVMQEAREMGAAQ---IGFS 76

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    + GF   + T+G
Sbjct: 77  GGEPLVRQDLAELIAEARRLGFYTNLITSG 106


>gi|302334990|ref|YP_003800197.1| Radical SAM domain protein [Olsenella uli DSM 7084]
 gi|301318830|gb|ADK67317.1| Radical SAM domain protein [Olsenella uli DSM 7084]
          Length = 297

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 44/123 (35%), Gaps = 15/123 (12%)

Query: 30  SGCN-----LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD-QLADLIEEQWITGEK 83
           +GC      L  GR      A C  CD          G R +   +L D  E   I    
Sbjct: 72  AGCPSGALSLREGR-VVWDEATCIGCD----QCIHVCGHRASPKVRLLDAGEVFGIVRGY 126

Query: 84  EG--RYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139
               R    +GGE +L       L +     G E  ++TNGTI+     D + V+     
Sbjct: 127 VPFIRGVTTSGGECMLHPRFLKGLFERCRGIGLETLIDTNGTIDFEGHEDLLAVANGVML 186

Query: 140 DLK 142
           D+K
Sbjct: 187 DVK 189


>gi|283782364|ref|YP_003373119.1| radical SAM domain-containing protein [Pirellula staleyi DSM 6068]
 gi|283440817|gb|ADB19259.1| Radical SAM domain protein [Pirellula staleyi DSM 6068]
          Length = 518

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 15/104 (14%)

Query: 30  SGCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
            GC L  G   +     C             C   +       GG++       L  ++ 
Sbjct: 82  QGCPLDCGLCTEHEQHTCVGLVEVTSSCNLTCPMCYAS--SAPGGKHTSVDDCKLAIDRL 139

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQ--ALNKRGFEIAVETNG 120
           +  E     C L+GGEP +  ++  I   AL +    + + TNG
Sbjct: 140 VAVEGRADVCQLSGGEPTIHPELETIVDYALAQPIDYVMINTNG 183


>gi|73669299|ref|YP_305314.1| metallo cofactor biosynthesis protein [Methanosarcina barkeri str.
           Fusaro]
 gi|72396461|gb|AAZ70734.1| metallo cofactor biosynthesis protein [Methanosarcina barkeri str.
           Fusaro]
          Length = 399

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       +        D +F     T+ G+  +D LA                 + +
Sbjct: 50  CNLKCVHCYAQAK------DIEFENELSTEEGKALIDDLA----------SFGSPVILFS 93

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           GGEP ++ D+P L     ++G    + TNGT+
Sbjct: 94  GGEPTMRKDLPELAAYAREKGMRAVISTNGTL 125


>gi|15903833|ref|NP_359383.1| pyruvate-formate lyase activating enzyme [Streptococcus pneumoniae
           R6]
 gi|116516256|ref|YP_817196.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
           D39]
 gi|148985556|ref|ZP_01818745.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
           SP3-BS71]
 gi|148993163|ref|ZP_01822729.1| purine operon repressor [Streptococcus pneumoniae SP9-BS68]
 gi|148998506|ref|ZP_01825947.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
           SP11-BS70]
 gi|149007451|ref|ZP_01831094.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
           SP18-BS74]
 gi|149012435|ref|ZP_01833466.1| purine operon repressor [Streptococcus pneumoniae SP19-BS75]
 gi|168484275|ref|ZP_02709227.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae CDC1873-00]
 gi|168487114|ref|ZP_02711622.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae CDC1087-00]
 gi|168489981|ref|ZP_02714180.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae SP195]
 gi|168492049|ref|ZP_02716192.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae CDC0288-04]
 gi|168576624|ref|ZP_02722490.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae MLV-016]
 gi|182684911|ref|YP_001836658.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae
           CGSP14]
 gi|225857550|ref|YP_002739061.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae P1031]
 gi|225859732|ref|YP_002741242.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae 70585]
 gi|225861794|ref|YP_002743303.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298230173|ref|ZP_06963854.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298254779|ref|ZP_06978365.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|298503747|ref|YP_003725687.1| pyruvate-formate lyase activating enzyme [Streptococcus pneumoniae
           TCH8431/19A]
 gi|307068585|ref|YP_003877551.1| pyruvate-formate lyase-activating enzyme [Streptococcus pneumoniae
           AP200]
 gi|307128175|ref|YP_003880206.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae 670-6B]
 gi|307707661|ref|ZP_07644141.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis
           NCTC 12261]
 gi|307709730|ref|ZP_07646181.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis
           SK564]
 gi|322377603|ref|ZP_08052093.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sp. M334]
 gi|15459475|gb|AAL00594.1| Pyruvate-formate lyase activating enzyme [Streptococcus pneumoniae
           R6]
 gi|116076832|gb|ABJ54552.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
           D39]
 gi|147755699|gb|EDK62745.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
           SP11-BS70]
 gi|147761023|gb|EDK67992.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
           SP18-BS74]
 gi|147763491|gb|EDK70427.1| purine operon repressor [Streptococcus pneumoniae SP19-BS75]
 gi|147922276|gb|EDK73397.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
           SP3-BS71]
 gi|147928137|gb|EDK79155.1| purine operon repressor [Streptococcus pneumoniae SP9-BS68]
 gi|172042468|gb|EDT50514.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae CDC1873-00]
 gi|182630245|gb|ACB91193.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae
           CGSP14]
 gi|183569969|gb|EDT90497.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae CDC1087-00]
 gi|183571602|gb|EDT92130.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae SP195]
 gi|183573670|gb|EDT94198.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae CDC0288-04]
 gi|183577629|gb|EDT98157.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae MLV-016]
 gi|225721531|gb|ACO17385.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae 70585]
 gi|225725207|gb|ACO21059.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae P1031]
 gi|225726839|gb|ACO22690.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298239342|gb|ADI70473.1| pyruvate-formate lyase activating enzyme [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301794919|emb|CBW37380.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
           INV104]
 gi|301800738|emb|CBW33386.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
           OXC141]
 gi|306410122|gb|ADM85549.1| Pyruvate-formate lyase-activating enzyme [Streptococcus pneumoniae
           AP200]
 gi|306485237|gb|ADM92106.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae 670-6B]
 gi|307616273|gb|EFN95466.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis
           NCTC 12261]
 gi|307619432|gb|EFN98557.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis
           SK564]
 gi|321281368|gb|EFX58378.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sp. M334]
 gi|327389141|gb|EGE87487.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae GA04375]
 gi|332071954|gb|EGI82442.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae GA17545]
 gi|332072058|gb|EGI82545.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae GA17570]
 gi|332072162|gb|EGI82648.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae GA41301]
          Length = 264

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 26/118 (22%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        VF    GC++           +C++C   DT +        
Sbjct: 18  TESFGSVDGPGIRFI----VF--LQGCHM-----------RCQYCHNPDT-WAMESNKSR 59

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
            R   D L + +  +   G K G    ++GGE LLQ+D  + L     ++G    ++T
Sbjct: 60  ERTVDDVLTEALRYRGFWGNKGG--ITVSGGEALLQIDFLIALFTKAKEQGIHCTLDT 115


>gi|89895755|ref|YP_519242.1| putative pyruvate-formate lyase-activating enzyme
           [Desulfitobacterium hafniense Y51]
 gi|89335203|dbj|BAE84798.1| putative pyruvate-formate lyase-activating enzyme
           [Desulfitobacterium hafniense Y51]
          Length = 288

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 8/136 (5%)

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
           +V++  ++I       E  G    ++GGEP+ Q D  + L +   + G+ +A++T+G   
Sbjct: 95  SVEECMEVIRHDKKYYENSGGGVTISGGEPMSQFDFCMALAKTCKEEGYHVALDTSGYAP 154

Query: 124 PPQGIDWICVSPKAGCDLKI---KGGQELKLVFPQVNVSPENYIGFDFERFSL-QPMDGP 179
             Q +D +        DLK    +    L   F +V +     +     RF +  P+   
Sbjct: 155 TKQFLDILPYIDLFLYDLKHMDSERCHSLVGAFNEVILDNAVMLSKVGARFQIRIPIIPH 214

Query: 180 FL--EENTNLAISYCF 193
               E+N   A ++C 
Sbjct: 215 LNDSEQNIRAAAAFCL 230


>gi|32363221|sp|P59748|PQQE_ENTIT RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|30841335|gb|AAP34382.1| PqqE [Kluyvera intermedia]
          Length = 374

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C          +      +Q  ++  +    G  +  +   +
Sbjct: 10  PLWLLAELTYRCPLQCPYCSNPLDF--SQQKKELTTEQWIEVFRQARAMGSVQLGF---S 64

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           GGEPL + D+P LI+A    GF   + T+G
Sbjct: 65  GGEPLTRKDLPELIRAARDLGFYTNLITSG 94


>gi|90424475|ref|YP_532845.1| pyruvate formate-lyase activating [Rhodopseudomonas palustris
           BisB18]
 gi|90106489|gb|ABD88526.1| Pyruvate formate-lyase activating [Rhodopseudomonas palustris
           BisB18]
          Length = 267

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 14/94 (14%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            +GC             +C++C               + D L D+           G   
Sbjct: 51  LAGC-----------LLRCQYCHNPDSWHMHHGKPSNSRDVLRDIAAYTKFLMHAHGG-V 98

Query: 89  VLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
            L+GGEPL+Q D    +++   + G   A++T G
Sbjct: 99  TLSGGEPLVQPDFTHAVLRGCKEMGLHTALDTAG 132


>gi|330502826|ref|YP_004379695.1| molybdenum cofactor biosynthesis protein A [Pseudomonas mendocina
           NK-01]
 gi|328917112|gb|AEB57943.1| molybdenum cofactor biosynthesis protein A [Pseudomonas mendocina
           NK-01]
          Length = 331

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 13/87 (14%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F      +    ++++L  + +     G +  R   +TGGEPL+
Sbjct: 23  DRCDFRCTYCMSEDMQFA----PRAQILSLEELYAVADTFIGLGVRRIR---ITGGEPLV 75

Query: 98  -QVDVPLIQALNKRGF--EIAVETNGT 121
            +  + L+Q L  R    ++A+ TNG+
Sbjct: 76  RKNLLSLLQRLGARDELDDLAITTNGS 102


>gi|307353427|ref|YP_003894478.1| molybdenum cofactor biosynthesis protein A [Methanoplanus
           petrolearius DSM 11571]
 gi|307156660|gb|ADN36040.1| molybdenum cofactor biosynthesis protein A [Methanoplanus
           petrolearius DSM 11571]
          Length = 294

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 17/91 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C       +   GG  + + L ++     +          LT
Sbjct: 23  CNL-----------KCSYC---HREGEKKSGGEISKEDLREIFS---VAELFNINSVKLT 65

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D+  I ++     + ++ TNGT+
Sbjct: 66  GGEPLLRKDICEIISMIPESMQSSLTTNGTL 96


>gi|288935351|ref|YP_003439410.1| coenzyme PQQ biosynthesis protein E [Klebsiella variicola At-22]
 gi|288890060|gb|ADC58378.1| coenzyme PQQ biosynthesis protein E [Klebsiella variicola At-22]
          Length = 380

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF   +         +Q  ++  +    G  +  +  
Sbjct: 11  PLWLLAELTYRCPLQCPYCSNPLDFARQEKE----LTTEQWIEVFRQARAMGSVQLGF-- 64

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +GGEPL + D+P LI+A    GF   + T+G
Sbjct: 65  -SGGEPLTRKDLPELIRAARDLGFYTNLITSG 95


>gi|153832284|ref|ZP_01984951.1| benzylsuccinate synthase activating enzyme [Vibrio harveyi HY01]
 gi|148871595|gb|EDL70450.1| benzylsuccinate synthase activating enzyme [Vibrio harveyi HY01]
          Length = 313

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           G     D L D + +     ++       +GGEPL+Q D+   L Q L+      A+E+ 
Sbjct: 114 GEEAKSDMLFDTLMKDKPFYDQSQGGVTFSGGEPLMQADLVAELAQRLHDNQVSTAIESC 173

Query: 120 GTIEP 124
             +  
Sbjct: 174 MHVPW 178


>gi|15901799|ref|NP_346403.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae
           TIGR4]
 gi|111658863|ref|ZP_01409484.1| hypothetical protein SpneT_02000034 [Streptococcus pneumoniae
           TIGR4]
 gi|148989976|ref|ZP_01821251.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae
           SP6-BS73]
 gi|149003635|ref|ZP_01828500.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae
           SP14-BS69]
 gi|169833821|ref|YP_001695330.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae Hungary19A-6]
 gi|194397459|ref|YP_002038559.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae G54]
 gi|225855466|ref|YP_002736978.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae JJA]
 gi|237650994|ref|ZP_04525246.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae CCRI 1974]
 gi|237822552|ref|ZP_04598397.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|303254100|ref|ZP_07340215.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae BS455]
 gi|303260349|ref|ZP_07346319.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae SP-BS293]
 gi|303262497|ref|ZP_07348439.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae SP14-BS292]
 gi|303265128|ref|ZP_07351041.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae BS397]
 gi|303266010|ref|ZP_07351905.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae BS457]
 gi|303268058|ref|ZP_07353859.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae BS458]
 gi|14973483|gb|AAK76043.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae
           TIGR4]
 gi|147758367|gb|EDK65367.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae
           SP14-BS69]
 gi|147924636|gb|EDK75722.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae
           SP6-BS73]
 gi|168996323|gb|ACA36935.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae Hungary19A-6]
 gi|194357126|gb|ACF55574.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae G54]
 gi|225724182|gb|ACO20035.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae JJA]
 gi|301802654|emb|CBW35420.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
           INV200]
 gi|302598933|gb|EFL65964.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae BS455]
 gi|302636397|gb|EFL66890.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638515|gb|EFL68980.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae SP-BS293]
 gi|302642418|gb|EFL72764.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae BS458]
 gi|302644451|gb|EFL74703.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae BS457]
 gi|302645345|gb|EFL75579.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae BS397]
          Length = 264

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 26/118 (22%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        VF    GC++           +C++C   DT +        
Sbjct: 18  TESFGSVDGPGIRFI----VF--LQGCHM-----------RCQYCHNPDT-WAMESNKSR 59

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
            R   D L + +  +   G K G    ++GGE LLQ+D  + L     ++G    ++T
Sbjct: 60  ERTVDDVLTEALRYRGFWGNKGG--ITVSGGEALLQIDFLIALFTKAKEQGIHCTLDT 115


>gi|328766119|gb|EGF76180.1| hypothetical protein BATDEDRAFT_28746 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1450

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 25/112 (22%)

Query: 41   DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            DR + +C +C        D  F+     K    + +++  L +     G ++ R   LTG
Sbjct: 1135 DRCNFRCTYCMPKEIFGRDFVFM----PKDQLLSFEEIERLAKNFVELGIRKIR---LTG 1187

Query: 93   GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134
            GEPLL+ D+P LI+ L + +  E IA+ TNG++           G+D I VS
Sbjct: 1188 GEPLLRRDLPILIERLTRMKDLEDIALTTNGSLLGALASKLKDAGLDRINVS 1239


>gi|229020835|ref|ZP_04177544.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1273]
 gi|228740460|gb|EEL90749.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1273]
          Length = 307

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 21/150 (14%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-RGFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+ D+P LIQ LN+  G E I +
Sbjct: 14  SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRKDLPELIQRLNEIEGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVSPKAGCDLKIKGGQ----ELKLVFPQVNVSPENYIG 165
            TNG++      D        + VS  +  + +         ++K V   +  + E  + 
Sbjct: 71  TTNGSLLKKFAPDLYKAGLSRVTVSLDSLNEERFSYLNGNRSKVKTVLAGIQAAAEAGMK 130

Query: 166 FDFERFSLQPMDGPFLEENTNLAISYCFQN 195
                  +Q   G   ++   +A  Y  +N
Sbjct: 131 IKM-NMVVQ--KGKNEQDIVQMA-EYFKEN 156


>gi|206577759|ref|YP_002238372.1| coenzyme PQQ biosynthesis protein E [Klebsiella pneumoniae 342]
 gi|290509402|ref|ZP_06548773.1| coenzyme PQQ biosynthesis protein E [Klebsiella sp. 1_1_55]
 gi|226704991|sp|B5XX58|PQQE_KLEP3 RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|206566817|gb|ACI08593.1| coenzyme PQQ biosynthesis protein E [Klebsiella pneumoniae 342]
 gi|289778796|gb|EFD86793.1| coenzyme PQQ biosynthesis protein E [Klebsiella sp. 1_1_55]
          Length = 380

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF   +         +Q  ++  +    G  +  +  
Sbjct: 11  PLWLLAELTYRCPLQCPYCSNPLDFARQEKE----LTTEQWIEVFRQARAMGSVQLGF-- 64

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +GGEPL + D+P LI+A    GF   + T+G
Sbjct: 65  -SGGEPLTRKDLPELIRAARDLGFYTNLITSG 95


>gi|149021926|ref|ZP_01835913.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
           SP23-BS72]
 gi|168494783|ref|ZP_02718926.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae CDC3059-06]
 gi|221232701|ref|YP_002511855.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
           ATCC 700669]
 gi|147929964|gb|EDK80952.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
           SP23-BS72]
 gi|183575346|gb|EDT95874.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pneumoniae CDC3059-06]
 gi|220675163|emb|CAR69747.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
           ATCC 700669]
          Length = 264

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 26/118 (22%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        VF    GC++           +C++C   DT +        
Sbjct: 18  TESFGSVDGPGIRFI----VF--LQGCHM-----------RCQYCHNPDT-WAMESNKSR 59

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
            R   D L + +  +   G K G    ++GGE LLQ+D  + L     ++G    ++T
Sbjct: 60  ERTVDDVLTEALRYRGFWGNKGG--ITVSGGEALLQIDFLIALFTKAKEQGIHCTLDT 115


>gi|227830742|ref|YP_002832522.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus
           L.S.2.15]
 gi|229579636|ref|YP_002838035.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus
           Y.G.57.14]
 gi|284998255|ref|YP_003420023.1| putative molybdenum cofactor biosynthesis protein A [Sulfolobus
           islandicus L.D.8.5]
 gi|259495869|sp|C3MR64|MOAA_SULIL RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|259495872|sp|C3N7B9|MOAA_SULIY RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|227457190|gb|ACP35877.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus
           L.S.2.15]
 gi|228010351|gb|ACP46113.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus
           Y.G.57.14]
 gi|284446151|gb|ADB87653.1| putative molybdenum cofactor biosynthesis protein A [Sulfolobus
           islandicus L.D.8.5]
          Length = 308

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 15/98 (15%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104
           +C FC      ++G +G  Y +    D++    +    +     LTGGEP L+ D+  ++
Sbjct: 23  ECFFC-----HMEGEEGDNY-ILSKEDILLVAKVAKNFDINSVKLTGGEPTLRRDLVEIV 76

Query: 105 QALNKRGFE-IAVETNGTIEPP-------QGIDWICVS 134
           + L + G+  +++ TNG +           G+D I VS
Sbjct: 77  RGLKQLGYRDVSMTTNGFLLKDLAYKLKLAGLDRINVS 114


>gi|116625682|ref|YP_827838.1| radical SAM family Fe-S protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228844|gb|ABJ87553.1| Fe-S protein, radical SAM family [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 300

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 18/110 (16%)

Query: 50  CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALN 108
           CD   +              LAD+          E  + V TGGEPL+  D+  L   L 
Sbjct: 2   CDIWRLTDAEEIAAAELERHLADI-------ERLEVEWVVFTGGEPLMHSDLFRLAALLR 54

Query: 109 KRGFEIAVETNGTI------EPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
           +RG  + + + G +         +G D + VS     D   +   E++ V
Sbjct: 55  RRGIRVTILSTGLLLDRNAAAIVEGADEVIVS----LDGPARIHDEIRRV 100


>gi|330507065|ref|YP_004383493.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6]
 gi|328927873|gb|AEB67675.1| radical SAM domain protein [Methanosaeta concilii GP-6]
          Length = 386

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 9/96 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            +       R +  C  C  D +  +  +       +L D +    I         +LTG
Sbjct: 40  PVVMWNLTRRCNLACSHCYMDAIPKEDDEMSLEEGMRLTDDLARMKI------PILILTG 93

Query: 93  GEPLLQVDVPLIQALNKR--GFEIAVETNGTIEPPQ 126
           GEPL+  +     A + R  G    + TNGT+  P+
Sbjct: 94  GEPLMSRNF-FSIAFHAREAGLRTVISTNGTLITPE 128


>gi|293402244|ref|ZP_06646382.1| radical SAM domain-containing protein [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291304351|gb|EFE45602.1| radical SAM domain-containing protein [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 280

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 21/104 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC          +  R N+ +   +I+E          + +  
Sbjct: 14  CNL-----------ACSFC-----IQNQRQPRRMNIQEFTHVIQEVRSVTRHVYLHVL-- 55

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134
            GEPL   D+P  +Q       E+ + TNGT+   + +D +C S
Sbjct: 56  -GEPLSHPDLPAFLQICKANDMEVILTTNGTL-LKKQVDALCAS 97


>gi|85858423|ref|YP_460625.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB]
 gi|85721514|gb|ABC76457.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB]
          Length = 397

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            +       R + +C  C   +   Q           +  ++IE+            + +
Sbjct: 40  PVVVWNMTRRCNLRCIHC---YSSSQNIQYSDEMTTAEAEEMIEDL---AAFGCPVLLFS 93

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           GGEPL++ D+P L Q    RG    + TNGT+
Sbjct: 94  GGEPLMREDLPELAQYAVSRGMRAVLSTNGTL 125


>gi|330508415|ref|YP_004384843.1| Radical SAM domain-containing protein [Methanosaeta concilii GP-6]
 gi|328929223|gb|AEB69025.1| Radical SAM domain protein [Methanosaeta concilii GP-6]
          Length = 349

 Score = 43.1 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 18/105 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            SGCNL   + Q+            +  +    G     ++ A+ + E       E    
Sbjct: 116 TSGCNLCCPQCQNWR----------YAFMDA--GELLTPEEAAERMTETKKQCGVE--RI 161

Query: 89  VLTGGEPLLQV--DVPLIQALNKRG--FEIAVETNGTIEPPQGID 129
            ++GGE  L     +  I+ L ++     I V+TNGTI     ID
Sbjct: 162 AISGGECTLNRPWLISFIRLLREQNPIARIHVDTNGTILTEDYID 206


>gi|301154949|emb|CBW14412.1| pyruvate formate lyase activating enzyme 1 [Haemophilus
           parainfluenzae T3T1]
          Length = 246

 Score = 43.1 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G   +V++L   +     
Sbjct: 21  IRFILFMQGC-----------LMRCKYCHNRDT----WDLEGGREISVEELMKEVVSYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                G     +GGE +LQ +      +A    G    ++TNG
Sbjct: 66  FMNATGGGVTASGGEAVLQAEFVRDWFRACKAEGINTCLDTNG 108


>gi|315231725|ref|YP_004072161.1| hypothetical protein TERMP_01964 [Thermococcus barophilus MP]
 gi|315184753|gb|ADT84938.1| hypothetical protein TERMP_01964 [Thermococcus barophilus MP]
          Length = 583

 Score = 43.1 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           NL +    +R +  C +C   F   +G       ++Q+  ++                TG
Sbjct: 139 NLLNIVLTNRCNLSCWYC--FFYAKEGQPIYEPTLEQIRMMLRNAKRENPIGATAVQFTG 196

Query: 93  GEPLL-QVDVPLIQALNKRGF-EIAVETNG 120
           GEP L +  + +I+   + G+  I + T+G
Sbjct: 197 GEPTLREDLIEIIRIAKEEGYDHIQLNTDG 226


>gi|189462269|ref|ZP_03011054.1| hypothetical protein BACCOP_02955 [Bacteroides coprocola DSM 17136]
 gi|189431036|gb|EDV00021.1| hypothetical protein BACCOP_02955 [Bacteroides coprocola DSM 17136]
          Length = 299

 Score = 43.1 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI-QALNKRGFEIAVETNG 120
              +    +++   +  +    + V+TGGEPL++ D+    +A++ +GF   + TNG
Sbjct: 1   MPKEDFLRVLDNIALHTDPHHVFVVITGGEPLMREDLEECGKAIHDKGFPWGMVTNG 57


>gi|52550485|gb|AAU84334.1| heme d1 biosynthesis protein [uncultured archaeon GZfos9D8]
          Length = 366

 Score = 43.1 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 30  SGC-NLWSGREQDRLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
           +GC +   G     ++ +C   C      I G        ++   +IEE    G  +  +
Sbjct: 25  TGCFSYLPGEVVWAVTRRCNLKC--KHCSIAGEDPEELTTEEGFGIIEEAAKLGHVKFAF 82

Query: 88  CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
              TGGEPLL+ D+  LI+  +    ++ + TNGT+
Sbjct: 83  ---TGGEPLLREDIYDLIEYASSFDMQVVMATNGTL 115


>gi|78043007|ref|YP_359644.1| tungsten-containing aldehyde ferredoxin oxidoreductase cofactor
           modifying protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995122|gb|ABB14021.1| tungsten-containing aldehyde ferredoxin oxidoreductase cofactor
           modifying protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 365

 Score = 43.1 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 19/95 (20%)

Query: 29  FSG-CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
            SG CNL            CR C   +      KGG         ++E+           
Sbjct: 25  LSGLCNL-----------NCRHC---YRNSWSYKGGLMERKTWEKVLEDAK--ALPLLSR 68

Query: 88  CVLTG-GEPLLQVDV-PLIQALNKRGFEIAVETNG 120
            VL G GEPLL  ++  +I  +   G ++++ TNG
Sbjct: 69  IVLGGIGEPLLHPEIKEIITNIKAMGLKVSITTNG 103


>gi|312137371|ref|YP_004004708.1| gtp cyclohydrolase subunit moaa [Methanothermus fervidus DSM 2088]
 gi|311225090|gb|ADP77946.1| GTP cyclohydrolase subunit MoaA [Methanothermus fervidus DSM 2088]
          Length = 308

 Score = 43.1 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 26/112 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C       +GT    Y + +  ++     +  E +     +T
Sbjct: 21  CNL-----------NCIYC-----HKEGTLPTNYEMSK-EEIYRICKVAKEFDINKVKIT 63

Query: 92  GGEPLLQVDV-PLIQALNKRGFE-IAVETNGTI-------EPPQGIDWICVS 134
           GGEPL++ D+  +I ALN   F+ I++ TNG             G+D I VS
Sbjct: 64  GGEPLIRKDIVEIISALNSLNFKDISMTTNGVYLKNYAYKLKKAGLDRINVS 115


>gi|160887003|ref|ZP_02068006.1| hypothetical protein BACOVA_05017 [Bacteroides ovatus ATCC 8483]
 gi|156107414|gb|EDO09159.1| hypothetical protein BACOVA_05017 [Bacteroides ovatus ATCC 8483]
          Length = 446

 Score = 43.1 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
           +C +C    +   GT   +  VD+    I +         R   L GGEPLL+ +  +I 
Sbjct: 111 RCPYCFEKDIQKDGTAFTKEMVDKAYQAILQIAPDERLRSRSITLYGGEPLLKRNKNIIS 170

Query: 106 ALNKRGFEI 114
            + ++G E+
Sbjct: 171 YIIEQGKEL 179


>gi|94313095|ref|YP_586304.1| putative hopanoid biosynthesis associated radical SAM protein
           [Cupriavidus metallidurans CH34]
 gi|93356947|gb|ABF11035.1| putative hopanoid biosynthesis associated radical SAM protein
           [Cupriavidus metallidurans CH34]
          Length = 388

 Score = 43.1 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 22/120 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +V +  + ++E             +
Sbjct: 38  CNL-----------ACSGCGKIDY--PDPILNQRLSVQECLEAVDECG------APVVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
            GGEPLL  D+P +++ +  R   + + TN  +   + ID    SP     + + G +E+
Sbjct: 79  AGGEPLLHKDMPEIVRGIIARKRFVYLCTN-ALLMEKKIDQYEPSPYFVWSIHLDGDREM 137


>gi|322434209|ref|YP_004216421.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321161936|gb|ADW67641.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 352

 Score = 43.1 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 8/76 (10%)

Query: 40  QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
             + + +C  CD      Q          ++   ++     G    R  VLTGGEPLL  
Sbjct: 34  HTQCNCRCVMCD----IWQRKDSRTMTAAEVTRHLDSFHALG---VRQVVLTGGEPLLNP 86

Query: 100 -DVPLIQALNKRGFEI 114
               +   L+     I
Sbjct: 87  ALAAICDLLHTLDIRI 102


>gi|157369944|ref|YP_001477933.1| pyruvate formate lyase-activating enzyme 1 [Serratia proteamaculans
           568]
 gi|157321708|gb|ABV40805.1| pyruvate formate-lyase activating enzyme [Serratia proteamaculans
           568]
          Length = 246

 Score = 43.1 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 56/187 (29%), Gaps = 50/187 (26%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G    V++L           
Sbjct: 25  VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKDAVSYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI--------EPPQGIDWI 131
              G     +GGE +LQ +      +A ++ G    ++TNG +        E     D +
Sbjct: 68  NASGGGVTASGGEAILQAEFVRDWFRACHEEGINTCLDTNGFVRRYDPVIDELLDATDLV 127

Query: 132 CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191
            +  K   D              Q  V   N+   +F R+          + N    I Y
Sbjct: 128 MLDLKQMND-----------DIHQNLVGVSNHRTLEFARY--------LAKRNQRTWIRY 168

Query: 192 CFQNPKW 198
               P W
Sbjct: 169 VVV-PGW 174


>gi|118431135|ref|NP_147386.2| hypothetical protein APE_0644.1 [Aeropyrum pernix K1]
 gi|116062459|dbj|BAA79615.2| conserved hypothetical protein [Aeropyrum pernix K1]
          Length = 327

 Score = 43.1 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 16/103 (15%)

Query: 31  GCNLWSGREQDRL------SAQCRFCDTDFV--GIQGTKGGRYNVDQLADLIEEQWITGE 82
           GC+L     +  +         C +C       G          V  + + + E   TG 
Sbjct: 4   GCDLCFPGRKAVVFVTGLCDDSCFYCPVSRAKLGRDVFYVNEVPVASVEEAVAEVLRTGA 63

Query: 83  KEGRYCVLTGGEPL--LQVDVPLIQALNK---RGFEIAVETNG 120
                  LTGG+PL  L   + + +AL     RGF I + T+G
Sbjct: 64  SGA---SLTGGDPLVALHRTLDVARALKSELGRGFHIHLYTSG 103


>gi|330507318|ref|YP_004383746.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6]
 gi|328928126|gb|AEB67928.1| radical SAM domain protein [Methanosaeta concilii GP-6]
          Length = 321

 Score = 42.7 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 18/117 (15%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR+C            G  + D+    +E             +L+
Sbjct: 12  CNL-----------SCRYC--RASASHEPDQGELDTDEAKRFVESIAPLK----PMLILS 54

Query: 92  GGEPLLQVDVPLIQALN-KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
           GGEPLL+ D+  I  L    G  +++ +NGT+      + I  S  +   + + G  
Sbjct: 55  GGEPLLRPDLFQIIRLAVSLGIRVSLASNGTLITSGLAEEIADSGVSRVSISLDGAD 111


>gi|325264807|ref|ZP_08131536.1| putative pyruvate formate-lyase 1 activating enzyme [Clostridium
           sp. D5]
 gi|324030099|gb|EGB91385.1| putative pyruvate formate-lyase 1 activating enzyme [Clostridium
           sp. D5]
          Length = 315

 Score = 42.7 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 45/162 (27%), Gaps = 59/162 (36%)

Query: 12  TLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------------QC-RFC-- 50
           ++Q G G       VF    GC L      +  S                  +C  FC  
Sbjct: 15  SIQDGPGVRT---TVF--LKGCPLSCQWCANPESQVFRSDIIHVPSTCVHCYRCVSFCTK 69

Query: 51  -----------------DT----------DFVGIQGTK---GGRYNVDQLADLIEEQWIT 80
                            DT          +    +G     G    VD++ D+I      
Sbjct: 70  GAVKLPDKIGDNPVFDHDTCVTCENQDVCEHACYEGAIEKVGKPMTVDEVMDVILHDEPF 129

Query: 81  GEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
               G    ++GGEPL+       L     +     A+ET G
Sbjct: 130 FSNGGG-ITVSGGEPLMHPEFLEELFSECQENYIHTAIETCG 170


>gi|253575835|ref|ZP_04853170.1| pyruvate formate-lyase 1-activating enzyme [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844878|gb|EES72891.1| pyruvate formate-lyase 1-activating enzyme [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 249

 Score = 42.7 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 43/125 (34%), Gaps = 38/125 (30%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F T+ G G          RF     GC             QC++C   DT       T
Sbjct: 13  ETFGTVDGPG---------IRFVLFMQGC-----------LLQCQYCHNPDT----WSLT 48

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-----NKRGFEIA 115
           +G    V+++   IE         G    ++GGE  LQ   P +  L      +      
Sbjct: 49  EGKEMTVEEVLAEIEPYLNYYRTSGGGLTVSGGEATLQA--PFVTELFREVKKRWNLHTT 106

Query: 116 VETNG 120
           ++TNG
Sbjct: 107 LDTNG 111


>gi|204930301|ref|ZP_03221278.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204320705|gb|EDZ05907.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 292

 Score = 42.7 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 47/137 (34%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGR-----------EQDRLSAQCRFC-- 50
           IF     +L  G+G       VF  F GC                 E  R   +C  C  
Sbjct: 24  IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLSCTP 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G    +D+L   + +  I     G    L+GGE L+Q       
Sbjct: 79  CLRDADECPSGAFERIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 138

Query: 104 IQALNKRGFEIAVETNG 120
           +Q L + G   A+ET G
Sbjct: 139 LQRLRRWGVPCAIETAG 155


>gi|167031421|ref|YP_001666652.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           putida GB-1]
 gi|166857909|gb|ABY96316.1| coenzyme PQQ biosynthesis protein E [Pseudomonas putida GB-1]
          Length = 386

 Score = 42.7 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 12/101 (11%)

Query: 22  RVAVFCRFSGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
             AV     G  LW   E   R   QC +C          +G   + +Q   ++ E    
Sbjct: 14  TPAV-----GLPLWLLAELTYRCPLQCPYCSNPLDF--AAQGQELSTEQWFKVMAEAREM 66

Query: 81  GEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           G  +      +GGEPL+ Q    LI    + G+   + T+G
Sbjct: 67  GAAQ---IGFSGGEPLVRQDLAELIGEARRLGYYTNLITSG 104


>gi|254255532|ref|ZP_04948848.1| radical SAM domain protein [Burkholderia dolosa AUO158]
 gi|124901269|gb|EAY72019.1| radical SAM domain protein [Burkholderia dolosa AUO158]
          Length = 240

 Score = 42.7 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 25/126 (19%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           GR+A  VF   SGC              C +C    + ++         D +   +  + 
Sbjct: 24  GRLACVVFV--SGCP-----------WHCHYCHNPHLRMRNRCADPAKWDAILAWLGTRA 70

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-----PQGIDWIC 132
              +      V  GGEPL++  +P ++      GF IA+ T G            I+WI 
Sbjct: 71  GLLDA----VVFCGGEPLVERHLPGMMAQARALGFSIALHTGGAYPDRLSQCLPLIEWIG 126

Query: 133 VSPKAG 138
              KA 
Sbjct: 127 FDVKAP 132


>gi|118594757|ref|ZP_01552104.1| pyrroloquinoline quinone biosynthesis protein PqqE [Methylophilales
           bacterium HTCC2181]
 gi|118440535|gb|EAV47162.1| pyrroloquinoline quinone biosynthesis protein PqqE [Methylophilales
           bacterium HTCC2181]
          Length = 394

 Score = 42.7 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 10/101 (9%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R    C FC   TD+           +      ++ +    G  +     
Sbjct: 17  PLWLLAEITYRCPLHCAFCYNPTDY---DKHTQNELDTKSWLSVLNQARDLGAAQLG--- 70

Query: 90  LTGGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQGID 129
           ++GGEPLL+ D+ +I +  ++ G+   + T+G     + ID
Sbjct: 71  ISGGEPLLRDDIEIIVEEAHQLGYYSNLITSGVGLTDKRID 111


>gi|325996049|gb|ADZ51454.1| Molybdenum cofactor biosynthesis protein [Helicobacter pylori 2018]
 gi|325997644|gb|ADZ49852.1| Molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           2017]
          Length = 293

 Score = 42.7 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 56/154 (36%), Gaps = 25/154 (16%)

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIA--VETN 119
               +D + + ++     G K+ R   +TGGEPLL+      I  L+    E+A  + TN
Sbjct: 13  ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDEFIAKLHAYNKEVALVLSTN 69

Query: 120 GTI-------EPPQGIDWICV---SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
           G +           G+  + V   S K+   LKI     LK     +  S +  +     
Sbjct: 70  GFLLKKMVKGLKDAGLSRVNVSLDSLKSDRVLKISQKDALKNALEGIEESLKVGLKLKLN 129

Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQ 203
                 M G   +E   L + Y         S+Q
Sbjct: 130 TVV---MKGVNDDEILEL-LEYAKNR-----SIQ 154


>gi|317496852|ref|ZP_07955182.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316895864|gb|EFV18016.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 250

 Score = 42.7 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 22/114 (19%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
            RF     GC             +C++C       +   G  +  + L        +   
Sbjct: 23  VRFIAFMQGC-----------RMRCKYCHNPETWQENC-GEDWQAEALLKRALRYRMYWG 70

Query: 83  KEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG---TIEPPQGIDWI 131
            +G    ++GGEPLLQ+   +   +   + G   A++T+    T E P    W+
Sbjct: 71  SDGG-ITVSGGEPLLQIEFLIEFFKLAKQEGIHTALDTSANPYTKEEPFHSKWL 123


>gi|152991853|ref|YP_001357574.1| hypothetical protein SUN_0257 [Sulfurovum sp. NBC37-1]
 gi|151423714|dbj|BAF71217.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 225

 Score = 42.7 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 67/181 (37%), Gaps = 27/181 (14%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
             A+F  F+ CN+           +C +C   +        G  + ++    ++ +    
Sbjct: 21  LAAIFW-FAKCNM-----------RCGYC---YNKDIVFGEGEISQEEAIAFLKSRVGLL 65

Query: 82  EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-------PPQGIDWICV 133
           E      VL+GGE  L  D+    + + + GF+I ++TNG            + +D+I +
Sbjct: 66  EG----VVLSGGEATLYSDLAGFCKKIKQLGFKIKLDTNGLNPEMIQELVEEKLVDYIAL 121

Query: 134 SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
             KA  +  ++  ++         ++      F FE  +    D   +EE   +      
Sbjct: 122 DYKAPKEKYLEITKDKHFDRFSKTLNFLIQKQFPFEVRTTVHSDLLRVEEINRIIRDLVK 181

Query: 194 Q 194
           +
Sbjct: 182 R 182


>gi|124028102|ref|YP_001013422.1| Fe-S osidoreductase [Hyperthermus butylicus DSM 5456]
 gi|123978796|gb|ABM81077.1| predicted Fe-S osidoreductase [Hyperthermus butylicus DSM 5456]
          Length = 561

 Score = 42.7 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 12/92 (13%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGG---RYNVDQLADLIEEQWITGEKEGRYCVL 90
           L +    +R    C +C          K G      ++Q+  +I +    G        +
Sbjct: 143 LANLVVTNRCDLSCWYC-----FFYAEKMGYVYEPTLEQIRMMIRQYAKEGVVMS--VQI 195

Query: 91  TGGEPLLQVDVP-LIQALNKRGFE-IAVETNG 120
           TGGEP L+ D+P +I+ L + G   I + T+G
Sbjct: 196 TGGEPTLRPDLPEIIKLLKEEGVRHIQLNTHG 227


>gi|313899253|ref|ZP_07832769.1| putative pyruvate formate-lyase 1-activating enzyme [Clostridium
           sp. HGF2]
 gi|312955933|gb|EFR37585.1| putative pyruvate formate-lyase 1-activating enzyme [Clostridium
           sp. HGF2]
          Length = 304

 Score = 42.7 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQALNKRGFEIAVET 118
           G +Y++ +L  ++ +     E+ G    L+GGE + Q       L + L  +G+ +A++T
Sbjct: 104 GKQYSIKELMTIVNKDAHFYEESGGGVTLSGGEVMTQDIDYLEELCRQLKDKGYNVAIDT 163

Query: 119 NG 120
            G
Sbjct: 164 CG 165


>gi|295090758|emb|CBK76865.1| molybdenum cofactor biosynthesis protein A, bacterial [Clostridium
           cf. saccharolyticum K10]
          Length = 332

 Score = 42.7 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 15/105 (14%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR S +CR+C     G+  T        ++L  + E     G    +   +TGGEPLL+ 
Sbjct: 18  DRCSLRCRYC-MPKEGVPLTAHENILTYEELLLVAEASVGLGIDRFK---ITGGEPLLRK 73

Query: 100 DVP-LIQALNKRG--FEIAVETNG-------TIEPPQGIDWICVS 134
           D P  I+ L       ++ + TNG             G+D + VS
Sbjct: 74  DCPDFIRRLKALPGVRQVTLTTNGLLLPEHLEELLSAGLDGVNVS 118


>gi|293369361|ref|ZP_06615946.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f]
 gi|292635528|gb|EFF54035.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f]
          Length = 394

 Score = 42.7 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
           +C +C    +   GT   +  VD+    I +         R   L GGEPLL+ +  +I 
Sbjct: 59  RCPYCFEKDIQKDGTAFTKEMVDKAYQAILQIAPDERLRSRSITLYGGEPLLKRNKNIIS 118

Query: 106 ALNKRGFEI 114
            + ++G E+
Sbjct: 119 YIIEQGKEL 127


>gi|268325532|emb|CBH39120.1| conserved hypothetical protein radical SAM superfamily [uncultured
           archaeon]
          Length = 342

 Score = 42.7 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 19/98 (19%)

Query: 25  VFCRFSG-CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           VFC  +  CNL            C+ C T+            + ++L  + ++     + 
Sbjct: 10  VFCELTNACNL-----------NCKHCLTE---SSKPLPDELSTNELYSVFQQL---ADY 52

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
              Y  LTGGEPLL+ D   ++  LN+  F+I++ +NG
Sbjct: 53  GTEYVELTGGEPLLRKDFDKILDLLNRLDFQISICSNG 90


>gi|224437923|ref|ZP_03658865.1| radical SAM family protein [Helicobacter cinaedi CCUG 18818]
 gi|313144366|ref|ZP_07806559.1| pyruvate formate-lyase activating enzyme [Helicobacter cinaedi CCUG
           18818]
 gi|313129397|gb|EFR47014.1| pyruvate formate-lyase activating enzyme [Helicobacter cinaedi CCUG
           18818]
          Length = 363

 Score = 42.7 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 19/92 (20%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            GCN            +C FC  D++G +     + +VD  A  I +    G K     +
Sbjct: 46  GGCN-----------HRCTFCGVDYMGYKSI---KIDVDVYARAIADMGRLGVKS---VM 88

Query: 90  LTG-GEPLLQVDVPLIQAL-NKRGFEIAVETN 119
             G GEP L  D+P + AL    G ++ + TN
Sbjct: 89  FAGEGEPFLHKDLPQMVALSKDSGVDVGITTN 120


>gi|313906551|ref|ZP_07839881.1| Radical SAM domain protein [Eubacterium cellulosolvens 6]
 gi|313468620|gb|EFR63992.1| Radical SAM domain protein [Eubacterium cellulosolvens 6]
          Length = 365

 Score = 42.7 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 15/96 (15%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         S++            G    +Y      ++++E     +       +T
Sbjct: 46  CNLECFHCGSSCSSR---------LDDGLPLEKYK-----EILDEVKDNFDISRLLLSIT 91

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ 126
           GGEPLL+ D   L++  +++GF   + +NGT+  P+
Sbjct: 92  GGEPLLRPDFFELMEYAHRQGFRWGMTSNGTLITPE 127


>gi|253700238|ref|YP_003021427.1| radical SAM protein [Geobacter sp. M21]
 gi|251775088|gb|ACT17669.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 471

 Score = 42.7 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 31  GCNLWSGREQDRLSAQCRF-------CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           GC    G   D     C         C+          G +   D   + I         
Sbjct: 76  GCPFDCGLCSDHRQLPCSVLLEVTDRCNMKCAVCFADAGPKGTEDPSLERISWLLERAMA 135

Query: 84  EGRYCVL--TGGEPLLQVDVP-LIQALNKRGFE-IAVETNG 120
               C L  +GGEP L+ D+P +++A  + GF  I V TNG
Sbjct: 136 AAGACSLQLSGGEPTLRDDLPEIVEAARRIGFTFIQVNTNG 176


>gi|237730866|ref|ZP_04561347.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter sp. 30_2]
 gi|291085629|ref|ZP_06353548.2| pyruvate formate-lyase 1-activating enzyme [Citrobacter youngae
           ATCC 29220]
 gi|226906405|gb|EEH92323.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter sp. 30_2]
 gi|291070473|gb|EFE08582.1| pyruvate formate-lyase 1-activating enzyme [Citrobacter youngae
           ATCC 29220]
          Length = 255

 Score = 42.7 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 33/97 (34%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    VD+L   +          G
Sbjct: 36  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVDELMKEVVTYRHFMNASG 80

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 81  GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 117


>gi|167765831|ref|ZP_02437884.1| hypothetical protein CLOSS21_00322 [Clostridium sp. SS2/1]
 gi|167712548|gb|EDS23127.1| hypothetical protein CLOSS21_00322 [Clostridium sp. SS2/1]
          Length = 250

 Score = 42.7 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 22/114 (19%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
            RF     GC             +C++C       +   G  +  + L        +   
Sbjct: 23  VRFIAFMQGC-----------RMRCKYCHNPETWQENC-GEDWQAEALLKRALRYRMYWG 70

Query: 83  KEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG---TIEPPQGIDWI 131
            +G    ++GGEPLLQ+   +   +   + G   A++T+    T E P    W+
Sbjct: 71  SDGG-ITVSGGEPLLQIEFLIEFFKLAKQEGIHTALDTSANPYTKEEPFHSKWL 123


>gi|254506007|ref|ZP_05118152.1| pyruvate formate-lyase 2-activating enzyme [Vibrio parahaemolyticus
           16]
 gi|219551230|gb|EED28210.1| pyruvate formate-lyase 2-activating enzyme [Vibrio parahaemolyticus
           16]
          Length = 313

 Score = 42.7 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           G     D L D + +     ++       +GGEPL+Q D+   L Q L+      A+E+ 
Sbjct: 114 GEEAKSDMLFDTLMKDKPFYDQSQGGVTFSGGEPLMQADLVAELAQRLHDNQVSTAIESC 173

Query: 120 GTIEP 124
             +  
Sbjct: 174 MHVPW 178


>gi|257388031|ref|YP_003177804.1| radical SAM protein [Halomicrobium mukohataei DSM 12286]
 gi|257170338|gb|ACV48097.1| Radical SAM domain protein [Halomicrobium mukohataei DSM 12286]
          Length = 407

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL+               DT+    +  T  G+  +D LAD                + 
Sbjct: 49  CNLYCDHCYAAA-------DTEVADGELSTAEGKAMLDGLAD----------YGVPVVLF 91

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           +GGEPL++ D+  LI   ++RG    + TNGT+
Sbjct: 92  SGGEPLVRDDLEELIAYADERGVRPVLSTNGTL 124


>gi|83590961|ref|YP_430970.1| GTP cyclohydrolase subunit MoaA [Moorella thermoacetica ATCC 39073]
 gi|123725642|sp|Q2RGL2|MOAA_MOOTA RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|83573875|gb|ABC20427.1| GTP cyclohydrolase subunit MoaA [Moorella thermoacetica ATCC 39073]
          Length = 323

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +CR+C            G  ++ +L ++     +          LTG
Sbjct: 10  NYLRIAITDRCNLRCRYC---MPATGVPLKGHEDILRLEEIATLARVAAGTGISRIRLTG 66

Query: 93  GEPLLQVD-VPLIQALNK-RGF-EIAVETNG 120
           GEPL++ + V L++ L    G  EI++ TNG
Sbjct: 67  GEPLVRKNVVTLVRELAAIPGLEEISLTTNG 97


>gi|125974195|ref|YP_001038105.1| radical SAM family protein [Clostridium thermocellum ATCC 27405]
 gi|125714420|gb|ABN52912.1| Radical SAM [Clostridium thermocellum ATCC 27405]
          Length = 330

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 20/99 (20%)

Query: 32  CNLWSGREQDRLSAQ--CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           CNL      +       C               G     +L  L+++       +     
Sbjct: 9   CNLRCLHCYNFSGENNICT-------------EGEMTDSELVALVKD---IASIKPLNVC 52

Query: 90  LTGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIEPPQ 126
             GGEPLL+ D+ L  I+ LN    +++  TNG +  P+
Sbjct: 53  FCGGEPLLRKDILLKCIKILNDEDIQVSFVTNGLLLTPE 91


>gi|46114368|ref|XP_383202.1| hypothetical protein FG03026.1 [Gibberella zeae PH-1]
          Length = 825

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 45/161 (27%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVG--IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           CNL            C +C     G  +QG + G         L+           +  V
Sbjct: 637 CNL-----------ACPWC---HNGPLVQGDRDG-------VSLLNVFKHLNSSSHKCLV 675

Query: 90  LTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           ++GGEP +    +P ++ L   G  + +++NGT            SP     LK    ++
Sbjct: 676 VSGGEPTIHKGLLPFLRILKNAGISVKLDSNGT------------SPDV---LKQVFAEK 720

Query: 149 L-KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
           L   V   +  + ENY     ++     +    LE +  L 
Sbjct: 721 LVDFVAMDIKCALENYRRVTGKK-----IKPKLLETSIELI 756


>gi|229895828|ref|ZP_04510998.1| Pyruvate formate-lyase activating enzyme [Yersinia pestis Pestoides
           A]
 gi|229700751|gb|EEO88780.1| Pyruvate formate-lyase activating enzyme [Yersinia pestis Pestoides
           A]
          Length = 136

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G    V++L           
Sbjct: 44  VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFM 86

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
              G     +GGE +LQ +      +A +K G    ++TNG
Sbjct: 87  NASGGGVTASGGEAILQAEFVRDWFRACHKEGIHTCLDTNG 127


>gi|257388542|ref|YP_003178315.1| molybdenum cofactor biosynthesis protein A [Halomicrobium
           mukohataei DSM 12286]
 gi|257170849|gb|ACV48608.1| molybdenum cofactor biosynthesis protein A [Halomicrobium
           mukohataei DSM 12286]
          Length = 335

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR +  C +C      DT   G    +    + D++ D +E   +  +        TGGE
Sbjct: 19  DRCNFDCVYCHNEGLGDTR--GPLAAQDDELSTDRVVDFLE---VAADLGVDSVKFTGGE 73

Query: 95  PLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
           PLL+ D+  I         +++ TNGT  P
Sbjct: 74  PLLREDLAEIVERTPDEMAVSLTTNGTYLP 103


>gi|241662581|ref|YP_002980941.1| molybdenum cofactor biosynthesis protein A [Ralstonia pickettii
           12D]
 gi|240864608|gb|ACS62269.1| molybdenum cofactor biosynthesis protein A [Ralstonia pickettii
           12D]
          Length = 373

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 25/136 (18%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  ++ +     + +++  +       G ++ R   LTGGE
Sbjct: 52  DRCNFRCVYCMPKDVFDKDYRFLRHS--ELLSFEEIERMARLFIEHGVEKIR---LTGGE 106

Query: 95  PLLQVDVP-LIQALN----KRGFE--IAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ D+  L++ L       G    + + TNG +           G+  + VS     D
Sbjct: 107 PLLRKDIERLVEMLARLTTAEGKPLDLTLTTNGALLARKAQSLKDAGLSRVTVSLDGIDD 166

Query: 141 LKIKGGQELKLVFPQV 156
              +   ++     +V
Sbjct: 167 ATFRRMNDVDFAVSEV 182


>gi|83717596|ref|YP_439900.1| radical SAM domain-containing protein [Burkholderia thailandensis
           E264]
 gi|257143059|ref|ZP_05591321.1| radical SAM domain-containing protein [Burkholderia thailandensis
           E264]
 gi|83651421|gb|ABC35485.1| radical SAM domain protein protein [Burkholderia thailandensis
           E264]
          Length = 516

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 24/116 (20%)

Query: 26  FCRF---SGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           F R      CNL            C + D+  +V  +G      +VD+ + LI+E    G
Sbjct: 183 FMRLHLTQRCNLTC--------VHC-YADSSPYVTSEGE----ISVDRWSRLIDEFADAG 229

Query: 82  EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI--CVS 134
            +     + TGGE L+      LI+  ++R  ++ + +NG +   + +D I  CV 
Sbjct: 230 GER---VLFTGGEALIYKGCDLLIRKAHERALDVTLFSNG-LLIDRYLDLIRACVD 281


>gi|222874685|gb|EEF11816.1| predicted protein [Populus trichocarpa]
          Length = 226

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 25/142 (17%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D ++  +    G   + +++          G ++ R   LTGGE
Sbjct: 48  DRCNFRCSYCMPKEVFDKNYSYL--PHGSLLSFEEITRTARLFVQHGVQKIR---LTGGE 102

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ +V  L++ L+       +  ++ + TNG++           G++ + VS     D
Sbjct: 103 PLLRKNVETLVEQLSALRTPGGQPLDLTLTTNGSLLARKARALKDAGLNRVTVSLDGLDD 162

Query: 141 LKIKGGQELKLVFPQVNVSPEN 162
              +   ++      V    E 
Sbjct: 163 AVFRSMNDVDFPVSDVLAGIEA 184


>gi|160900317|ref|YP_001565899.1| molybdenum cofactor biosynthesis protein A [Delftia acidovorans
           SPH-1]
 gi|160365901|gb|ABX37514.1| molybdenum cofactor biosynthesis protein A [Delftia acidovorans
           SPH-1]
          Length = 378

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 25/142 (17%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D ++  +    G   + +++          G ++ R   LTGGE
Sbjct: 48  DRCNFRCSYCMPKEVFDKNYSYL--PHGSLLSFEEITRTARLFVQHGVQKIR---LTGGE 102

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ +V  L++ L+       +  ++ + TNG++           G++ + VS     D
Sbjct: 103 PLLRKNVETLVEQLSALRTPGGQPLDLTLTTNGSLLARKARALKDAGLNRVTVSLDGLDD 162

Query: 141 LKIKGGQELKLVFPQVNVSPEN 162
              +   ++      V    E 
Sbjct: 163 AVFRSMNDVDFPVSDVLAGIEA 184


>gi|29828190|ref|NP_822824.1| hypothetical protein SAV_1648 [Streptomyces avermitilis MA-4680]
 gi|29605292|dbj|BAC69359.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 340

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 38  CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  +++ L  R   + + TN  +   + +D    SP     + I G +E
Sbjct: 80  GGEPLMHPQIDEIVRQLVARKKYVFLCTNAMLLRKKMVD-FTPSPYFAFAVHIDGLRE 136


>gi|15790963|ref|NP_280787.1| tRNA-modifying enzyme [Halobacterium sp. NRC-1]
 gi|169236710|ref|YP_001689910.1| tRNA-modifying enzyme [Halobacterium salinarum R1]
 gi|10581542|gb|AAG20267.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167727776|emb|CAP14564.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 325

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 46/136 (33%), Gaps = 33/136 (24%)

Query: 15  GEG---GHAGRVAVF--CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG--RYNV 67
           GEG    HA     F   R   C         R + +C FC  D  G      G    + 
Sbjct: 35  GEGTCYKHA-----FYGIRSHRC--IQMTPVVRCNERCVFCWRDHSGHTYELDGVAWDDP 87

Query: 68  DQLADL-----------------IEEQWITGEKEGRYCVLT-GGEPLLQVDVP-LIQALN 108
           + + D                  +  +      E R+  ++  GEP L   +P LI+A +
Sbjct: 88  EAVVDASIRLQRKLLSGFGGNDEVPRERFEEAMEPRHVAISLDGEPTLYPHLPELIEAFH 147

Query: 109 KRGFEIAVETNGTIEP 124
            RG    + +NGT   
Sbjct: 148 DRGLTTFLVSNGTRPA 163


>gi|269121870|ref|YP_003310047.1| radical SAM protein [Sebaldella termitidis ATCC 33386]
 gi|268615748|gb|ACZ10116.1| Radical SAM domain protein [Sebaldella termitidis ATCC 33386]
          Length = 447

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 21/107 (19%)

Query: 30  SGCNLWSGREQ--------------DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE 75
           +GC    G  +              DR +  C  C   F           +++++++  +
Sbjct: 75  AGCPFDCGICESHRQATCCVLLEVTDRCNLNCPVC---FAKAGSEVSSDPSLEKISEWYD 131

Query: 76  EQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGF-EIAVETNG 120
               +G        L+GGEP +      +I+    +GF    + TNG
Sbjct: 132 MLLKSGG--PFNIQLSGGEPTMRHDLDEIIKLGKSKGFDFFQLNTNG 176


>gi|328943331|ref|ZP_08240796.1| pyruvate formate-lyase-activating enzyme [Atopobium vaginae DSM
           15829]
 gi|327491300|gb|EGF23074.1| pyruvate formate-lyase-activating enzyme [Atopobium vaginae DSM
           15829]
          Length = 294

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 21/113 (18%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VFC   GC             +C++C         T G R +V +L  + +       + 
Sbjct: 38  VFC--QGCPF-----------RCKYCHNPETWAFDT-GQRMSVAELMKVYDRNRPFYRRG 83

Query: 85  GRYCVLTGGEPLLQVDV--PLIQALNK--RG-FEIAVETNGTIEPPQGIDWIC 132
           G     +GGEPL Q +    L +A ++  +G     ++++G    P+  +++ 
Sbjct: 84  G--ITASGGEPLAQPNFIAALFKAAHEDPKGRIHTCLDSSGATFNPRHPEYVS 134


>gi|149922396|ref|ZP_01910830.1| heme biosynthesis protein [Plesiocystis pacifica SIR-1]
 gi|149816758|gb|EDM76248.1| heme biosynthesis protein [Plesiocystis pacifica SIR-1]
          Length = 548

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104
           +C FC    V  Q T+  +     L D++ +      K      + GGEP +     P +
Sbjct: 18  RCVFC----VSGQMTEMRKAKPTPLPDVLAKFDEARAKGITKVTIMGGEPTIHPTFFPTV 73

Query: 105 QALNKRGFE-IAVETNGT-IEPPQGIDWI 131
           +   + GFE I + TNGT ++    ID I
Sbjct: 74  KYALELGFETIVIFTNGTRLDKQDFIDRI 102


>gi|189423997|ref|YP_001951174.1| radical SAM protein [Geobacter lovleyi SZ]
 gi|189420256|gb|ACD94654.1| Radical SAM domain protein [Geobacter lovleyi SZ]
          Length = 436

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 19/111 (17%)

Query: 29  FSGCN--------------LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI 74
             GC               L      ++ + +C  C      IQ       ++D LA  I
Sbjct: 83  LGGCPDDCGLCSAHQRRPTLVEIELTEKCNLRCPVCFMSAEEIQAKAAPGPDLDALAA-I 141

Query: 75  EEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVE--TNGTI 122
               +          LTGGEP ++ D+P I  L +R GF  A+E  TNG +
Sbjct: 142 YRSILAQTGPDTAIQLTGGEPTMRADLPEIVKLGRRIGFS-AIEVNTNGVV 191


>gi|323475095|gb|ADX85701.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus
           REY15A]
 gi|323477827|gb|ADX83065.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus
           HVE10/4]
          Length = 308

 Score = 42.7 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 15/98 (15%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104
           +C FC      ++G +G  Y +    D++    +          LTGGEP L+ D+  ++
Sbjct: 23  ECFFC-----HMEGEEGDNY-ILSKEDILLVAKVAKNFGINSVKLTGGEPTLRRDLVEIV 76

Query: 105 QALNKRGFE-IAVETNGTIEPP-------QGIDWICVS 134
           + L + G+  +++ TNG +           G+D I VS
Sbjct: 77  RGLKQLGYRDVSMTTNGFLLKDLAYKLKLAGLDRINVS 114


>gi|293396112|ref|ZP_06640392.1| coenzyme PQQ synthesis protein E [Serratia odorifera DSM 4582]
 gi|291421245|gb|EFE94494.1| coenzyme PQQ synthesis protein E [Serratia odorifera DSM 4582]
          Length = 379

 Score = 42.7 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF   +         +Q  ++  +    G  +  +  
Sbjct: 13  PLWLLAELTYRCPLQCPYCSNPLDFAAQEKE----LTTEQWINVFRQARAMGSVQLGF-- 66

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +GGEPL++ D+P LI A    GF   + T+G
Sbjct: 67  -SGGEPLVRKDLPELIAAARDLGFYTNLITSG 97


>gi|269216301|ref|ZP_06160155.1| molybdenum cofactor biosynthesis protein A [Slackia exigua ATCC
           700122]
 gi|269130560|gb|EEZ61638.1| molybdenum cofactor biosynthesis protein A [Slackia exigua ATCC
           700122]
          Length = 333

 Score = 42.7 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C  +             ++++  ++    +       +  LTGGEPL++  
Sbjct: 18  DRCNFRCIYCMPEEGVCSLGHDAILRLEEIERIVS---VAAGMGISHVRLTGGEPLVRKG 74

Query: 101 -VPLIQALNK-RGFE-IAVETNGTIEPPQGID 129
            V LI A+ K  G E IA+ TNG + P    D
Sbjct: 75  VVDLIAAMKKTEGIESIALTTNGALLPLMADD 106


>gi|297526031|ref|YP_003668055.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297254947|gb|ADI31156.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 564

 Score = 42.7 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L +    +R +  C +C   +    G       ++Q+  ++ +    G        LTGG
Sbjct: 114 LVNIVLTNRCNLSCWYC-FFYAEAAGYVYEP-TIEQIVSMVRQIKKQG--IAVNVQLTGG 169

Query: 94  EPLL-QVDVPLIQALNKRGFE-IAVETNG 120
           EP L +  V +++AL   G   + + TNG
Sbjct: 170 EPTLREDLVDIVKALKAEGVRHLQLNTNG 198


>gi|255011415|ref|ZP_05283541.1| putative radical SAM-family protein [Bacteroides fragilis 3_1_12]
          Length = 361

 Score = 42.7 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 14/99 (14%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C+ C +D    + ++      +    +I+             ++T
Sbjct: 43  CNL-----------ACKHCGSD--CRKMSEQKDMPAEDFLRVIDSITPHVNPNEVNIIIT 89

Query: 92  GGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQGID 129
           GGEPL++ D+  +  AL +RG+   + +NG     + +D
Sbjct: 90  GGEPLMRNDLEKVGLALYRRGYPWGIVSNGLYLTRERLD 128


>gi|237728065|ref|ZP_04558546.1| pyruvate formate lyase II activase [Citrobacter sp. 30_2]
 gi|226910322|gb|EEH96240.1| pyruvate formate lyase II activase [Citrobacter sp. 30_2]
          Length = 292

 Score = 42.7 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 50/144 (34%), Gaps = 32/144 (22%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-----------LWSGREQDRLSAQCRFC-- 50
           IF     +L  G+G       VF  F GC            L    E  R  ++C  C  
Sbjct: 24  IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESLSPRIETVRRESKCLHCTP 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G    +D L   + +  I     G    L+GGE L+Q       
Sbjct: 79  CLRDADECPSGAFERIGRDITLDDLEREVMKDDIFFRSSGGGVTLSGGEVLMQAPFATRF 138

Query: 104 IQALNKRGFEIAVETNGTIEPPQG 127
           +Q L +     A+ET G  + P G
Sbjct: 139 LQRLRRWDVRCAIETAG--DAPAG 160


>gi|145590635|ref|YP_001152637.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145282403|gb|ABP49985.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 380

 Score = 42.7 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 9/91 (9%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           LW        +  C++C   F         R    ++A  I                 GG
Sbjct: 26  LWFVLTTGACNLACKYCGGSFSNKHSPWRPRAAPGEVAKFIAS-----RDSSPVVFFYGG 80

Query: 94  EPLL--QVDVPLIQALNKRGFEIAVETNGTI 122
           EPLL  Q    ++ AL    F I   TNGT+
Sbjct: 81  EPLLNPQYIAKVMDALGNARFGIQ--TNGTL 109


>gi|328951759|ref|YP_004369093.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452083|gb|AEB07912.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 392

 Score = 42.7 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 6/91 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            +       R + +C  C       Q T G   +   LA+ +              + +G
Sbjct: 40  PVVVWNVTRRCNLKCVHC-----YAQATAGVAEDELSLAEGLALLDDLKAFGVPVVLFSG 94

Query: 93  GEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           GEPL+  D+  L++     G    + TNG +
Sbjct: 95  GEPLMHPDLLTLVEHAVAAGMRAVISTNGVL 125


>gi|227828005|ref|YP_002829785.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus
           M.14.25]
 gi|229585274|ref|YP_002843776.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus
           M.16.27]
 gi|238620233|ref|YP_002915059.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus
           M.16.4]
 gi|259495867|sp|C3MZ99|MOAA_SULIA RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|259495868|sp|C4KIH7|MOAA_SULIK RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|259495870|sp|C3MXF3|MOAA_SULIM RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|227459801|gb|ACP38487.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus
           M.14.25]
 gi|228020324|gb|ACP55731.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus
           M.16.27]
 gi|238381303|gb|ACR42391.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus
           M.16.4]
          Length = 308

 Score = 42.7 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 15/98 (15%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104
           +C FC      ++G +G  Y +    D++    +          LTGGEP L+ D+  ++
Sbjct: 23  ECFFC-----HMEGEEGDNY-ILSKEDILLVAKVAKNFGINSVKLTGGEPTLRRDLVEIV 76

Query: 105 QALNKRGFE-IAVETNGTIEPP-------QGIDWICVS 134
           + L + G+  +++ TNG +           G+D I VS
Sbjct: 77  RGLKQLGYRDVSMTTNGFLLKDLAYKLKLAGLDRINVS 114


>gi|229824233|ref|ZP_04450302.1| hypothetical protein GCWU000282_01537 [Catonella morbi ATCC 51271]
 gi|229786587|gb|EEP22701.1| hypothetical protein GCWU000282_01537 [Catonella morbi ATCC 51271]
          Length = 279

 Score = 42.7 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 36/124 (29%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC L           +C FC   DT       
Sbjct: 38  TESFGSVDGPG---------IRFITFMQGCRL-----------RCEFCHNPDT----WAT 73

Query: 60  TKGGRYNVDQL-ADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAV 116
             G  Y   QL  + ++ Q   G+K G    ++GGEPLLQ+D  +   +     G    +
Sbjct: 74  RGGHDYTPQQLFDEAVQYQDFWGKKGG--VTVSGGEPLLQIDFIIEYFKICKANGIHTTL 131

Query: 117 ETNG 120
           ++ G
Sbjct: 132 DSCG 135


>gi|269798345|ref|YP_003312245.1| molybdenum cofactor biosynthesis protein A [Veillonella parvula DSM
           2008]
 gi|269094974|gb|ACZ24965.1| molybdenum cofactor biosynthesis protein A [Veillonella parvula DSM
           2008]
          Length = 321

 Score = 42.7 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 21/107 (19%)

Query: 27  CRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            R S    CN             C +C       + T   +  +  + + ++        
Sbjct: 12  VRLSLTDACNFC-----------CPYC----RPAEITPQSQTQLLSVDEWMKILGAFHHI 56

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGFE--IAVETNGTIEPPQG 127
             +   LTGGEPLL   +  L+  + + G+   I++ TNG++   + 
Sbjct: 57  GVKAVRLTGGEPLLYPHIEELLSRIKESGWFEDISMTTNGSLLASRA 103


>gi|218888075|ref|YP_002437396.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218759029|gb|ACL09928.1| Radical SAM domain protein [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 397

 Score = 42.7 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 18/105 (17%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQV 99
            R  A C +C       + T GG +  + ++  +  + +   +  R+  L G GEPLL  
Sbjct: 25  TRCDAACVYC------PRTTCGGGWRDEDMSMALFRRVLAACRGARHLHLQGWGEPLLHP 78

Query: 100 DVP--LIQALNKRGFEIAVETNGTI--------EPPQGIDWICVS 134
             P  L +A+ + G+ + + TNG              G+D + +S
Sbjct: 79  RYPDMLAEAV-EAGYVVGLTTNGVHLDAGMAGVVVDAGVDLVALS 122


>gi|297616758|ref|YP_003701917.1| molybdenum cofactor biosynthesis protein A [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144595|gb|ADI01352.1| molybdenum cofactor biosynthesis protein A [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 326

 Score = 42.7 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 8/96 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           N       DR + +CR+C     G++        +++++  +I+   +      R   LT
Sbjct: 10  NYLRVSVTDRCNLRCRYC-MPEAGVELKPHSEILSLEEIHRIIK---VGTRVGIRKVRLT 65

Query: 92  GGEPLLQVDVP-LIQALNKRGF--EIAVETNGTIEP 124
           GGEPL++ ++  L+Q +       ++A+ TNG + P
Sbjct: 66  GGEPLVRRNLSRLVQMIRTIDLIDDVAITTNGLLFP 101


>gi|262279087|ref|ZP_06056872.1| coenzyme PQQ synthesis protein E [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259438|gb|EEY78171.1| coenzyme PQQ synthesis protein E [Acinetobacter calcoaceticus
           RUH2202]
          Length = 384

 Score = 42.7 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 59/174 (33%), Gaps = 20/174 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    D+   +          +  D+ ++    G  +  +  
Sbjct: 8   PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFDVFDQARQMGAVQLGF-- 61

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140
            +GGEPL+ Q    L+   +++GF   + T+G              G+D I VS +A   
Sbjct: 62  -SGGEPLVRQDLEQLVAHAHQQGFYTNLITSGMGLTEQRIADLKQAGLDHIQVSFQASDP 120

Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
           +        K  F Q          +D+    L  +      +     I  C +
Sbjct: 121 VVNDALAGSKYAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIEQIIELCLE 173


>gi|291615125|ref|YP_003525282.1| molybdenum cofactor biosynthesis protein A [Sideroxydans
           lithotrophicus ES-1]
 gi|291585237|gb|ADE12895.1| molybdenum cofactor biosynthesis protein A [Sideroxydans
           lithotrophicus ES-1]
          Length = 369

 Score = 42.7 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 18/105 (17%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D     +   +      +++  ++ +    G K+ R   LTGGE
Sbjct: 50  DRCNLRCTYCMPREIFDESHTFL--PRAELLTFEEIERVVRQFIKLGVKKIR---LTGGE 104

Query: 95  PLLQVDVP-LIQALN------KRGFEIAVETNGTIEPPQGIDWIC 132
           PLL+  +  LI+ L           EIA+ TN  +   +  D   
Sbjct: 105 PLLRRGIERLIEKLAGLQTLTGEPLEIALTTNAVLLARKAKDLKT 149


>gi|206890412|ref|YP_002249883.1| molybdenum cofactor biosynthesis protein A [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|226707391|sp|B5YJ09|MOAA_THEYD RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|206742350|gb|ACI21407.1| molybdenum cofactor biosynthesis protein A [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 322

 Score = 42.7 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 10/142 (7%)

Query: 41  DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C   + +          + +++  ++E     G  + R   +TGGEPLL+ 
Sbjct: 18  DRCNLRCIYCMPEEGITNLLPHHEILSYEEILKIVEIGVDLGITKIR---ITGGEPLLRK 74

Query: 100 DV-PLIQALNK-RGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL-VFPQ 155
            +   I+ L +  G   I + TNG +      D      K   ++ +    E K     +
Sbjct: 75  GIVSFIERLARIEGIRDIGMTTNGVLLKKFAKDLYNAGLKR-VNVSLDSLDENKFRAITR 133

Query: 156 VNVSPENYIGFDFERFS-LQPM 176
           V +  + + G D  + + LQP+
Sbjct: 134 VGLIDDVFEGIDEAKNAGLQPV 155


>gi|312137493|ref|YP_004004830.1| radical sam domain protein [Methanothermus fervidus DSM 2088]
 gi|311225212|gb|ADP78068.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088]
          Length = 231

 Score = 42.7 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 39  EQDRLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           +   L A+C F C   +   +  +    +V++L  + ++     + +    ++ GGEP L
Sbjct: 11  KITILVARCNFKC--KYCFFKPFREIDIDVEKLIKITKKLR--KQFKLNKIMIAGGEPTL 66

Query: 98  QVDVP-LIQALNKRGFEIAVETNG 120
           + D+P  ++ L +  F + + TNG
Sbjct: 67  EKDLPEFVKLLKENNFYVIISTNG 90


>gi|289207329|ref|YP_003459395.1| molybdenum cofactor biosynthesis protein A [Thioalkalivibrio sp.
           K90mix]
 gi|288942960|gb|ADC70659.1| molybdenum cofactor biosynthesis protein A [Thioalkalivibrio sp.
           K90mix]
          Length = 334

 Score = 42.7 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 65/196 (33%), Gaps = 56/196 (28%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEG 85
            R S          DR   +C +C          +   + + +++  ++      G +  
Sbjct: 22  VRLS--------VTDRCDLRCFYC-MPKGFRDFEEPEHWLSFEEIERVMGAFGRLGTRRV 72

Query: 86  RYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144
           R   LTGGEPL++ ++P L   LN                  GID I +S         +
Sbjct: 73  R---LTGGEPLVRKNLPDLAARLNAL---------------PGIDDISLS--TNATRMAR 112

Query: 145 GGQELKLV-FPQVNVSPENYIGFDFERFS------------------LQPMD------GP 179
             QELK     ++NVS ++     F+  +                  L P+       G 
Sbjct: 113 HAQELKDAGVARINVSLDSLKPEVFKEITGGKLEKVLDGLMASKAAGLDPIKINMVVMGG 172

Query: 180 FLEENTNLAISYCFQN 195
             E      + +C ++
Sbjct: 173 INEPEVEDMVDFCIEH 188


>gi|331087326|ref|ZP_08336395.1| hypothetical protein HMPREF0987_02698 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408417|gb|EGG87888.1| hypothetical protein HMPREF0987_02698 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 435

 Score = 42.7 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 31/149 (20%)

Query: 31  GCNLWSGREQDRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           GCNL           +CR C    D + V        R+ +++   +++E    G  E  
Sbjct: 122 GCNL-----------KCRHCYLGTDINHVQT------RFTLEKAKTILDELKAAGVVE-- 162

Query: 87  YCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
               TGGE       + +I+      F + + TNGT+   +  D +   P +   + + G
Sbjct: 163 -VTFTGGEIFSYPHALEVIEYACDLKFLVTILTNGTLITEKIADKLTQLPISEIRISMYG 221

Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQ 174
            +E    F  +  +      FD    +LQ
Sbjct: 222 TKEFHDRFVGIEGA------FDKSLHALQ 244


>gi|308234338|ref|ZP_07665075.1| pyruvate formate-lyase activating enzyme [Atopobium vaginae DSM
           15829]
          Length = 269

 Score = 42.7 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 21/113 (18%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VFC   GC             +C++C         T G R +V +L  + +       + 
Sbjct: 13  VFC--QGCPF-----------RCKYCHNPETWAFDT-GQRMSVAELMKVYDRNRPFYRRG 58

Query: 85  GRYCVLTGGEPLLQVDV--PLIQALNK--RG-FEIAVETNGTIEPPQGIDWIC 132
           G     +GGEPL Q +    L +A ++  +G     ++++G    P+  +++ 
Sbjct: 59  G--ITASGGEPLAQPNFIAALFKAAHEDPKGRIHTCLDSSGATFNPRHPEYVS 109


>gi|307302848|ref|ZP_07582603.1| Radical SAM domain protein [Shewanella baltica BA175]
 gi|306913208|gb|EFN43630.1| Radical SAM domain protein [Shewanella baltica BA175]
          Length = 298

 Score = 42.7 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 17/105 (16%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCV 89
           NL +       S +C  CDT           +   Y V+++  ++  Q            
Sbjct: 72  NLNNKPRIRWDSERCSQCDTCLAVCPKQASPKVTHYTVEEILGILHSQR----HFINGIT 127

Query: 90  LTGGEPLLQVDVPLIQALNK--------RGFEIAVETNGTIEPPQ 126
           ++GGE  LQ  +P I AL K              ++TNG++    
Sbjct: 128 VSGGEASLQ--LPFILALFKGIKATESLSHLTCMLDTNGSLSLTG 170


>gi|262194083|ref|YP_003265292.1| glycosyl transferase group 1 [Haliangium ochraceum DSM 14365]
 gi|262077430|gb|ACY13399.1| glycosyl transferase group 1 [Haliangium ochraceum DSM 14365]
          Length = 782

 Score = 42.7 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN-KRGFEIAV 116
           +G       ++ + +++ +    G +E      T GEPLL      I AL  + G  + +
Sbjct: 479 EGRARREMPIELIREVVADAAAHGLRE--IIPSTMGEPLLYEHFEAILALCVEHGVRLNL 536

Query: 117 ETNGTIEPPQGIDW------ICVSPKAGCDLKIKGGQE 148
            TNG+        W      +    K   +   K  QE
Sbjct: 537 TTNGSFPRLGARAWAERIVPVTSDVKISWNGATKATQE 574


>gi|42782634|ref|NP_979881.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC
           10987]
 gi|42738560|gb|AAS42489.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC
           10987]
          Length = 338

 Score = 42.7 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  F+          + D++  +       G ++ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ LNK  G E I + TNG++      D        + VS
Sbjct: 75  GEPLLRRGLPQLIERLNKINGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126


>gi|302335982|ref|YP_003801189.1| glycyl-radical enzyme activating protein family [Olsenella uli DSM
           7084]
 gi|301319822|gb|ADK68309.1| glycyl-radical enzyme activating protein family [Olsenella uli DSM
           7084]
          Length = 302

 Score = 42.7 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118
           G    VD++ +   +  +  E  G    L+GGE L     D+ L+  L+  G +  +ET
Sbjct: 107 GETKTVDEVLETCLQDRLFYEDSGGGVTLSGGEALTWPEFDIELLSRLHGEGVDTCIET 165


>gi|28867738|ref|NP_790357.1| coenzyme PQQ synthesis protein E [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|32363288|sp|Q88A84|PQQE_PSESM RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|28850973|gb|AAO54052.1| coenzyme PQQ synthesis protein E [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331015064|gb|EGH95120.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 389

 Score = 42.7 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF      +G     +Q   +++E    G  +     
Sbjct: 22  PLWLLAELTYRCPLQCPYCSNPLDFAR----QGQELTTEQWFKVMQEAREMGAAQ---IG 74

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
            +GGEPL+ Q    LI    + GF   + T+G
Sbjct: 75  FSGGEPLVRQDLAELIAEARRLGFYTNLITSG 106


>gi|312863599|ref|ZP_07723837.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           vestibularis F0396]
 gi|322516171|ref|ZP_08069104.1| pyruvate formate-lyase activating enzyme [Streptococcus
           vestibularis ATCC 49124]
 gi|311101135|gb|EFQ59340.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           vestibularis F0396]
 gi|322125347|gb|EFX96702.1| pyruvate formate-lyase activating enzyme [Streptococcus
           vestibularis ATCC 49124]
          Length = 266

 Score = 42.7 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 42/181 (23%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +C++C   DT       
Sbjct: 16  TESFGSVDGPG---------IRFIVFMQGC-----------KMRCQYCHNPDT-----WA 50

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIA 115
            +  +     + D+++E        G +    ++GGE +LQ+D    L     K G    
Sbjct: 51  MESNKAVERTVEDVLDEALRFRHFWGEHGGITVSGGEAMLQIDFVTALFTEAKKLGIHCT 110

Query: 116 VETNG-----TIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
           ++T G     T E  + +D  + V+     D+K    ++ K V  Q N +   +  +  +
Sbjct: 111 LDTCGFVYRNTPEYHEVVDKLLAVTDLVLLDIKEIDPEQHKFVTRQPNKNILEFAQYLSD 170

Query: 170 R 170
           +
Sbjct: 171 K 171


>gi|300728461|ref|ZP_07061821.1| pyruvate formate-lyase 1-activating enzyme [Prevotella bryantii
           B14]
 gi|299774262|gb|EFI70894.1| pyruvate formate-lyase 1-activating enzyme [Prevotella bryantii
           B14]
          Length = 248

 Score = 42.7 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 34/121 (28%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F ++ G G          RF     GC +           +C+FC   DT     +  
Sbjct: 10  ESFGSVDGPG---------IRFIAFLKGCPM-----------RCQFCHNPDT----WKLD 45

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           K      D L D   E++ T   E     ++GGE L+Q+D  + L +  ++RG    ++T
Sbjct: 46  KTNETTADDLLDK-AERYRTYWGEKGGITVSGGEALMQIDFLLELFEKAHQRGINTCLDT 104

Query: 119 N 119
           +
Sbjct: 105 S 105


>gi|104782043|ref|YP_608541.1| hypothetical protein PSEEN2976 [Pseudomonas entomophila L48]
 gi|95111030|emb|CAK15750.1| conserved hypothetical protein [Pseudomonas entomophila L48]
          Length = 476

 Score = 42.7 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 49/135 (36%), Gaps = 41/135 (30%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GCNL            C +C   D D    + + G + N       +E        E R
Sbjct: 110 TGCNL-----------SCTYCYKEDLD----KPSAGRKMNSATAEASVEMLLRESPDEAR 154

Query: 87  Y-CVLTGGEPLLQVDVPLIQ--------ALNKRGFEIA--VETNGTIEPPQGIDW----- 130
           Y  V  GGEPL   +  LI+           + G ++   + TN T+   + +DW     
Sbjct: 155 YSVVFFGGEPL--SNRALIEHMVAYCERRFAEAGKQVEFIMTTNATLLTEEIVDWLDAHR 212

Query: 131 --ICVS---PKAGCD 140
             + VS   PK   D
Sbjct: 213 FGLSVSIDGPKTVHD 227


>gi|319793190|ref|YP_004154830.1| molybdenum cofactor biosynthesis protein a [Variovorax paradoxus
           EPS]
 gi|315595653|gb|ADU36719.1| molybdenum cofactor biosynthesis protein A [Variovorax paradoxus
           EPS]
          Length = 386

 Score = 42.7 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 18/94 (19%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +  +      +    ++     +      R   LTGGE
Sbjct: 53  DRCNFRCSYCMPKDVFDKDYKYLPHS-----ALLSFEEMTRLARLFAAHGVRKIRLTGGE 107

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGT 121
           PLL+ ++  LI+ L +         E+ + TNG+
Sbjct: 108 PLLRKNIEALIEQLAEIRTPDGAPLELTLTTNGS 141


>gi|307594461|ref|YP_003900778.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM
           14429]
 gi|307549662|gb|ADN49727.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 413

 Score = 42.7 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 11/100 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L       R + +C  C   ++  IQG        ++   ++++     E      +++
Sbjct: 36  PLIFWNITYRCNLKCIHC---YINAIQGLSRDELTTEEALRVVDD---AHELRTPLLIIS 89

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDW 130
           GGEPL++ D+  +++  N+ G +I++ TNGT+      DW
Sbjct: 90  GGEPLIREDITEVMRRANEYGIKISLSTNGTL---ITRDW 126


>gi|302130686|ref|ZP_07256676.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 389

 Score = 42.7 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF      +G     +Q   +++E    G  +     
Sbjct: 22  PLWLLAELTYRCPLQCPYCSNPLDFAR----QGQELTTEQWFKVMQEAREMGAAQ---IG 74

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
            +GGEPL+ Q    LI    + GF   + T+G
Sbjct: 75  FSGGEPLVRQDLAELIAEARRLGFYTNLITSG 106


>gi|213967724|ref|ZP_03395871.1| coenzyme PQQ synthesis protein E [Pseudomonas syringae pv. tomato
           T1]
 gi|301382361|ref|ZP_07230779.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. tomato Max13]
 gi|302062929|ref|ZP_07254470.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. tomato K40]
 gi|213927500|gb|EEB61048.1| coenzyme PQQ synthesis protein E [Pseudomonas syringae pv. tomato
           T1]
          Length = 389

 Score = 42.7 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF      +G     +Q   +++E    G  +     
Sbjct: 22  PLWLLAELTYRCPLQCPYCSNPLDFAR----QGQELTTEQWFKVMQEAREMGAAQ---IG 74

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
            +GGEPL+ Q    LI    + GF   + T+G
Sbjct: 75  FSGGEPLVRQDLAELIAEARRLGFYTNLITSG 106


>gi|189348185|ref|YP_001941381.1| pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia
           multivorans ATCC 17616]
 gi|189338323|dbj|BAG47391.1| pyrroloquinoline quinone biosynthesis protein E [Burkholderia
           multivorans ATCC 17616]
          Length = 377

 Score = 42.7 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 34  LWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           LW   E   R    C FC   +  +   T G   + D    +I +    G  +  +   +
Sbjct: 14  LWLLAELTYRCPLHCAFC---YNPVDFATHGAELDTDTWRTVIADARALGAAQLGF---S 67

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           GGEPL + D+  L++     GF   + T+G
Sbjct: 68  GGEPLQRDDLETLVEHARSLGFYTNLITSG 97


>gi|115360909|ref|YP_778046.1| pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia
           ambifaria AMMD]
 gi|115286237|gb|ABI91712.1| coenzyme PQQ biosynthesis protein E [Burkholderia ambifaria AMMD]
          Length = 374

 Score = 42.7 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 34  LWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           LW   E   R    C FC   +  +   T G   + D    +I +    G  +      +
Sbjct: 14  LWLLAELTYRCPLHCAFC---YNPVDFATHGAELDTDAWRTVISDARALGAAQ---IGFS 67

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           GGEPL + D+  L+Q     GF   + T+G
Sbjct: 68  GGEPLQRDDLEVLVQHARSLGFYTNLITSG 97


>gi|238792408|ref|ZP_04636042.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia intermedia
           ATCC 29909]
 gi|238728334|gb|EEQ19854.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia intermedia
           ATCC 29909]
          Length = 246

 Score = 42.7 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 44/184 (23%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G    V++L           
Sbjct: 25  VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELVKEAITYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134
              G     +GGE +LQ +      +A ++ G    ++TNG +        + +D     
Sbjct: 68  NASGGGVTASGGEAILQAEFVRDWFRACHEVGIHTCLDTNGFVRRYDPVIDELLD----- 122

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
                DL +   +++     Q  V   N+   +F R+          + N    I Y   
Sbjct: 123 ---ATDLVMLDLKQMDDSVHQNLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV 171

Query: 195 NPKW 198
            P W
Sbjct: 172 -PGW 174


>gi|330968164|gb|EGH68424.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 389

 Score = 42.7 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF      +G     +Q   +++E    G  +     
Sbjct: 22  PLWLLAELTYRCPLQCPYCSNPLDFAR----QGQELTTEQWFKVMQEAREMGAAQ---IG 74

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
            +GGEPL+ Q    LI    + GF   + T+G
Sbjct: 75  FSGGEPLVRQDLAELIAEARRLGFYTNLITSG 106


>gi|41615170|ref|NP_963668.1| hypothetical protein NEQ381 [Nanoarchaeum equitans Kin4-M]
 gi|40068894|gb|AAR39229.1| NEQ381 [Nanoarchaeum equitans Kin4-M]
          Length = 245

 Score = 42.7 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 21/101 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
             GCNL      +   A+   C            G  ++++L D ++   +  +      
Sbjct: 26  LCGCNLKCPFCHNWKIAEKIGC------------GELDINRLLDELDSASLLIDYLH--- 70

Query: 89  VLTGGEPLLQVDVPLIQALNK--RGFEI--AVETNGTIEPP 125
            +TGGEPLLQ + PL++        + +  ++ TN T+  P
Sbjct: 71  -VTGGEPLLQWE-PLLELFKTSYENYNVENSLNTNFTLTIP 109


>gi|21674155|ref|NP_662220.1| molybdenum cofactor biosynthesis protein A [Chlorobium tepidum TLS]
 gi|24211970|sp|P59038|MOAA_CHLTE RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|21647315|gb|AAM72562.1| molybdenum cofactor biosynthesis protein A [Chlorobium tepidum TLS]
          Length = 330

 Score = 42.7 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 27/113 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C         T+  + +V + + LI      G ++ R+   T
Sbjct: 30  CNL-----------RCTYC---LKEDAPTQTQQLDVVETSKLIALLAGMGVRKIRF---T 72

Query: 92  GGEPLLQVDVPLIQALNKR--GF-EIAVETNGTI-------EPPQGIDWICVS 134
           GGEPLL   +P +  + K   G   + + TNG +           G+D + +S
Sbjct: 73  GGEPLLHPSIPELVRIAKATPGIDTVCITTNGVLLDRQLDALVEAGLDGVNLS 125


>gi|330874819|gb|EGH08968.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 389

 Score = 42.7 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF      +G     +Q   +++E    G  +     
Sbjct: 22  PLWLLAELTYRCPLQCPYCSNPLDFAR----QGQELTTEQWFKVMQEAREMGAAQ---IG 74

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
            +GGEPL+ Q    LI    + GF   + T+G
Sbjct: 75  FSGGEPLVRQDLAELIAEARRLGFYTNLITSG 106


>gi|289178850|gb|ADC86096.1| Pyruvate formate-lyase activating enzyme [Bifidobacterium animalis
           subsp. lactis BB-12]
          Length = 311

 Score = 42.7 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 30/135 (22%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G    +D +   IE   
Sbjct: 88  RMTVF--LSGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMVVKIERYK 130

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTIEP---PQGIDWICV 133
              E        +GGE ++Q      + +A  + G    ++T+G +      + ID I +
Sbjct: 131 DLFEATKGGITFSGGESMMQPAFVSRVFRAAKEMGVHTCLDTSGFLNANYSDEMIDDIDL 190

Query: 134 SPKAGCDLKIKGGQE 148
                C L +K G E
Sbjct: 191 -----CLLDVKSGDE 200


>gi|256751165|ref|ZP_05492046.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749890|gb|EEU62913.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 460

 Score = 42.7 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 19/92 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV-DQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C+ C   ++G    K  +Y   +++ +L+ E   +G  E     +
Sbjct: 145 CNL-----------KCKHC---YLGNARFKLLQYTPLERIKELLTELKNSGVIE---VFI 187

Query: 91  TGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
           TGGEP L  +   +++      F + + TNGT
Sbjct: 188 TGGEPFLHPNFFEILEYAVDMNFFVTILTNGT 219


>gi|183601394|ref|ZP_02962764.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683451|ref|YP_002469834.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241191106|ref|YP_002968500.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196512|ref|YP_002970067.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183219000|gb|EDT89641.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219621101|gb|ACL29258.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240249498|gb|ACS46438.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240251066|gb|ACS48005.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295794095|gb|ADG33630.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 300

 Score = 42.7 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 30/135 (22%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G    +D +   IE   
Sbjct: 77  RMTVF--LSGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMVVKIERYK 119

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTIEP---PQGIDWICV 133
              E        +GGE ++Q      + +A  + G    ++T+G +      + ID I +
Sbjct: 120 DLFEATKGGITFSGGESMMQPAFVSRVFRAAKEMGVHTCLDTSGFLNANYSDEMIDDIDL 179

Query: 134 SPKAGCDLKIKGGQE 148
                C L +K G E
Sbjct: 180 -----CLLDVKSGDE 189


>gi|168179167|ref|ZP_02613831.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum NCTC 2916]
 gi|226950612|ref|YP_002805703.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum A2 str. Kyoto]
 gi|182670116|gb|EDT82092.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum NCTC 2916]
 gi|226844506|gb|ACO87172.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum A2 str. Kyoto]
          Length = 301

 Score = 42.7 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 43  LSAQCRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
              +C FC   T+F      +  G      ++   I +  +  E+ G     +GGEP+L 
Sbjct: 80  DEGKCNFCGKCTNFCPNNAREYVGKDLTSQEIIKEIIKDEVFYEQSGGGVTFSGGEPMLH 139

Query: 99  VDVP--LIQALNKRGFEIAVETNG 120
            D    +++    RG    ++T+G
Sbjct: 140 ADFINGILEECKARGIHTTIDTSG 163


>gi|161522986|ref|YP_001585915.1| pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia
           multivorans ATCC 17616]
 gi|160346539|gb|ABX19623.1| coenzyme PQQ biosynthesis protein E [Burkholderia multivorans ATCC
           17616]
          Length = 387

 Score = 42.7 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 34  LWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           LW   E   R    C FC   +  +   T G   + D    +I +    G  +  +   +
Sbjct: 24  LWLLAELTYRCPLHCAFC---YNPVDFATHGAELDTDTWRTVIADARALGAAQLGF---S 77

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           GGEPL + D+  L++     GF   + T+G
Sbjct: 78  GGEPLQRDDLETLVEHARSLGFYTNLITSG 107


>gi|94264953|ref|ZP_01288725.1| Radical SAM [delta proteobacterium MLMS-1]
 gi|93454609|gb|EAT04884.1| Radical SAM [delta proteobacterium MLMS-1]
          Length = 358

 Score = 42.7 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 18/98 (18%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            + CNL            CR C   ++             ++   +        ++    
Sbjct: 31  LTACNL-----------SCRHC---YINPDQHGRATVTRAEIDHWLARL--AAPEQQSNV 74

Query: 89  VLTGGEPLLQVDVPL-IQALNKRGFE-IAVETNGTIEP 124
           V  GGEP L  ++   ++   + G+  + ++TNGT  P
Sbjct: 75  VFLGGEPSLHPELLHGVRQARRLGYRGVTIDTNGTFAP 112


>gi|330503316|ref|YP_004380185.1| putative radical-activating enzyme [Pseudomonas mendocina NK-01]
 gi|328917602|gb|AEB58433.1| putative radical-activating enzyme [Pseudomonas mendocina NK-01]
          Length = 261

 Score = 42.7 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 10/111 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           +L         + +CR+C    +   G     ++  ++ D ++++    +      V +G
Sbjct: 49  HLACVLFCQGCAWRCRYCHNPELIRCGATNAEWSWAKVLDFLQQRQGLLQA----VVFSG 104

Query: 93  GEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPP-----QGIDWICVSPKA 137
           GE  LQ+ +P  ++ + + GF++ + + G             DW+    KA
Sbjct: 105 GEATLQLALPSAMRRVRELGFKVGLHSAGIKPASFGRALAHCDWVGFDVKA 155


>gi|168183500|ref|ZP_02618164.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum Bf]
 gi|182673358|gb|EDT85319.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum Bf]
          Length = 300

 Score = 42.7 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 43  LSAQCRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
              +C FC   T+F      +  G      ++   I +  +  E+ G     +GGEP+L 
Sbjct: 80  DEGKCNFCGKCTNFCPNNAREYVGKDLTSQEIIKEIIKDEVFYEQSGGGVTFSGGEPMLH 139

Query: 99  VDVP--LIQALNKRGFEIAVETNG 120
            D    +++    RG    ++T+G
Sbjct: 140 ADFINGILEECKARGIHTTIDTSG 163


>gi|313149231|ref|ZP_07811424.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137998|gb|EFR55358.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 346

 Score = 42.7 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 14/99 (14%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C+ C +D    + ++      +    +I+             ++T
Sbjct: 28  CNL-----------ACKHCGSD--CRKMSEQKDMPAEDFLRVIDSITPHVNPNEVNIIIT 74

Query: 92  GGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQGID 129
           GGEPL++ D+  +  AL +RG+   + +NG     + +D
Sbjct: 75  GGEPLMRNDLEKVGLALYRRGYPWGIVSNGLYLTRERLD 113


>gi|295697133|ref|YP_003590371.1| Radical SAM domain protein [Bacillus tusciae DSM 2912]
 gi|295412735|gb|ADG07227.1| Radical SAM domain protein [Bacillus tusciae DSM 2912]
          Length = 396

 Score = 42.7 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 19/97 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C+ C   +     G   G    ++    I++       +    ++
Sbjct: 47  CNL-----------RCQHC---YANAGPGRFEGEMTHEEGRAFIDDL---AAFKVPVLLV 89

Query: 91  TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ 126
           +GGEPL + D + L+Q    +G  + + TNGT+  P+
Sbjct: 90  SGGEPLSRPDTLDLMQYAVSKGIRVTLSTNGTLITPE 126


>gi|253681060|ref|ZP_04861863.1| 1-methyl alkyl succinate synthase activase [Clostridium botulinum D
           str. 1873]
 gi|253562909|gb|EES92355.1| 1-methyl alkyl succinate synthase activase [Clostridium botulinum D
           str. 1873]
          Length = 310

 Score = 42.7 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           G   NV+++   +++  I   +      L+GGEPL+Q    + L++A    G+   +ET
Sbjct: 110 GKEMNVNEIIQELKKDSIQFRRSNGGITLSGGEPLMQSKFTLELLKACKSMGWNTTMET 168


>gi|254421513|ref|ZP_05035231.1| radical SAM domain protein [Synechococcus sp. PCC 7335]
 gi|196189002|gb|EDX83966.1| radical SAM domain protein [Synechococcus sp. PCC 7335]
          Length = 337

 Score = 42.7 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 20/119 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C       +       + ++    +EE             + 
Sbjct: 38  CNL-----------ACSGCG-KIQHPKEILKQNLSPEECFAAVEECG------APVVSIP 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
           GGEPLL   +  +++ L +R   + + TNG +   + +D    S      + + G QEL
Sbjct: 80  GGEPLLHPQIDEIVEGLIERKKFVYLCTNG-LLLEKSLDKFKPSSYLSFSVHLDGLQEL 137


>gi|125974193|ref|YP_001038103.1| radical SAM family protein [Clostridium thermocellum ATCC 27405]
 gi|125714418|gb|ABN52910.1| Radical SAM [Clostridium thermocellum ATCC 27405]
          Length = 326

 Score = 42.7 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 20/121 (16%)

Query: 32  CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           CNL           +C  C  D+        K      DQ+  +++E    GE +     
Sbjct: 30  CNL-----------RCLHCFNDSPTSTKSACK--ELEDDQIIKIVKEL---GEMKVANVC 73

Query: 90  LTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
            +GGEPL+  QV    +  L +R    ++ TNGT+   Q  + + V       + + G  
Sbjct: 74  FSGGEPLVRKQVLFNCLMLLGQRNVRTSIVTNGTLIDEQTAEMLNVLGVKEVQVSLDGCN 133

Query: 148 E 148
           E
Sbjct: 134 E 134


>gi|308374965|ref|ZP_07442243.2| transferase [Mycobacterium tuberculosis SUMu007]
 gi|308376208|ref|ZP_07438032.2| transferase [Mycobacterium tuberculosis SUMu008]
 gi|308347873|gb|EFP36724.1| transferase [Mycobacterium tuberculosis SUMu007]
 gi|308351861|gb|EFP40712.1| transferase [Mycobacterium tuberculosis SUMu008]
          Length = 727

 Score = 42.7 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 18/112 (16%)

Query: 27  CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQL 70
            RF      GC    G   D     C             C   F        G       
Sbjct: 16  LRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYAITAAQ 75

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRG-FEIAVETNG 120
            + + +  +  E E    + +GGEP +    +  + A   R    + + TNG
Sbjct: 76  CERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVIINTNG 127


>gi|300813209|ref|ZP_07093577.1| six-Cys-in-45 modification radical SAM protein [Peptoniphilus sp.
           oral taxon 836 str. F0141]
 gi|300512662|gb|EFK39794.1| six-Cys-in-45 modification radical SAM protein [Peptoniphilus sp.
           oral taxon 836 str. F0141]
          Length = 449

 Score = 42.7 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 29/113 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRY-C 88
           CNL           +C++C   F      KG R   ++    D ++    +         
Sbjct: 103 CNL-----------RCKYC---FASQGDFKGKRLLMDLQTGKDALDFLIKSSGYRRNLEV 148

Query: 89  VLTGGEPLLQVDVPLIQALNKRG----------FEIAVETNGTIEPPQGIDWI 131
              GGEPL+  +  +++ L + G          F   + TNGT      ID+I
Sbjct: 149 DFFGGEPLM--NFEVVKKLVEYGRIQEKKYNKHFRFTITTNGTYLTDDKIDFI 199


>gi|284007593|emb|CBA73174.1| pyruvate formate-lyase activating enzyme [Arsenophonus nasoniae]
          Length = 246

 Score = 42.7 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G    V++L   +       
Sbjct: 25  VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEELMKEVVSYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
              G     +GGE +LQ +      +A  ++G    ++TNG
Sbjct: 68  NASGGGVTASGGEAILQAEFVRDWFRACQQQGIHTCLDTNG 108


>gi|154151787|ref|YP_001405405.1| radical SAM domain-containing protein [Candidatus Methanoregula
           boonei 6A8]
 gi|154000339|gb|ABS56762.1| Radical SAM domain protein [Methanoregula boonei 6A8]
          Length = 332

 Score = 42.7 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 16/103 (15%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGRYC 88
           GCNL            C FC  D      T+   Y V  D L   +EE            
Sbjct: 37  GCNL-----------NCPFCSVDAGPCSKTRATSYEVELDYLLSAVEEIAPFKGTGVECH 85

Query: 89  VLTGGEPLLQVDVP-LIQALNKRGF--EIAVETNGTIEPPQGI 128
           + + GEPL+   +P L+ AL        ++++TNGT+   + I
Sbjct: 86  IDSPGEPLMYARLPELVAALKAIDAVSTVSLQTNGTLLDERKI 128


>gi|15643993|ref|NP_229042.1| hypothetical protein TM1237 [Thermotoga maritima MSB8]
 gi|148270657|ref|YP_001245117.1| radical SAM domain-containing protein [Thermotoga petrophila RKU-1]
 gi|170289363|ref|YP_001739601.1| radical SAM domain-containing protein [Thermotoga sp. RQ2]
 gi|281412967|ref|YP_003347046.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
 gi|4981791|gb|AAD36312.1|AE001779_14 conserved hypothetical protein [Thermotoga maritima MSB8]
 gi|147736201|gb|ABQ47541.1| Radical SAM domain protein [Thermotoga petrophila RKU-1]
 gi|170176866|gb|ACB09918.1| Radical SAM domain protein [Thermotoga sp. RQ2]
 gi|281374070|gb|ADA67632.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
          Length = 355

 Score = 42.7 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 47/133 (35%), Gaps = 40/133 (30%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQG--TKGGRYNVDQLADLIEEQW 78
           AVF  F+GCNL            C FC   D  ++   G  ++G   ++D+L ++  +  
Sbjct: 127 AVF--FAGCNL-----------DCLFCQNIDHKYMVKDGRISEGKIVDIDELVEIAMKPR 173

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQALN-KRGFEIAVETNGTIEP------------- 124
           ++           GG+P       L  A+       I  ETNG   P             
Sbjct: 174 VSC------VCFFGGDPTPWTVFALEFAVKLGNRRRICWETNGLAHPRIMERMARVSLES 227

Query: 125 --PQGIDWICVSP 135
                IDW   SP
Sbjct: 228 GGIVKIDWKAFSP 240


>gi|253800776|ref|YP_003033777.1| transferase [Mycobacterium tuberculosis KZN 1435]
 gi|254233222|ref|ZP_04926548.1| hypothetical protein TBCG_03654 [Mycobacterium tuberculosis C]
 gi|308372639|ref|ZP_07429331.2| transferase [Mycobacterium tuberculosis SUMu004]
 gi|308379602|ref|ZP_07486866.2| transferase [Mycobacterium tuberculosis SUMu010]
 gi|308380789|ref|ZP_07491083.2| transferase [Mycobacterium tuberculosis SUMu011]
 gi|124603015|gb|EAY61290.1| hypothetical protein TBCG_03654 [Mycobacterium tuberculosis C]
 gi|253322279|gb|ACT26882.1| transferase [Mycobacterium tuberculosis KZN 1435]
 gi|308332594|gb|EFP21445.1| transferase [Mycobacterium tuberculosis SUMu004]
 gi|308356477|gb|EFP45328.1| transferase [Mycobacterium tuberculosis SUMu010]
 gi|308360423|gb|EFP49274.1| transferase [Mycobacterium tuberculosis SUMu011]
 gi|323717593|gb|EGB26795.1| transferase [Mycobacterium tuberculosis CDC1551A]
          Length = 788

 Score = 42.7 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 18/112 (16%)

Query: 27  CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQL 70
            RF      GC    G   D     C             C   F        G       
Sbjct: 77  LRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYAITAAQ 136

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRG-FEIAVETNG 120
            + + +  +  E E    + +GGEP +    +  + A   R    + + TNG
Sbjct: 137 CERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVIINTNG 188


>gi|332173797|gb|AEE23051.1| molybdenum cofactor biosynthesis protein A [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 322

 Score = 42.7 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 38/148 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN                CDT             +++++  +       G  + R   +T
Sbjct: 21  CNFSCEYCLPDGYQ----CDTPRDF--------LSLNEIKRIASAFAQLGTSKIR---IT 65

Query: 92  GGEPLLQVDVPLIQALNK----RGF-EIAVETNGTIEPPQGID-WI------------CV 133
           GGEP L+ D+P  QA+       G  ++A+ TNG  + P+ ID W+             +
Sbjct: 66  GGEPSLRKDLP--QAIRACATTPGIKQVAITTNG-YKLPEHIDSWVDAGLTSMNISIDSL 122

Query: 134 SPKAGCDLKIKGGQELKLVFPQVNVSPE 161
            P+      I G  +L ++   ++ + E
Sbjct: 123 DPRMFAS--ITGHDKLDVILRGIDRAIE 148


>gi|306795393|ref|ZP_07433695.1| transferase [Mycobacterium tuberculosis SUMu006]
 gi|308344074|gb|EFP32925.1| transferase [Mycobacterium tuberculosis SUMu006]
          Length = 776

 Score = 42.7 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 18/112 (16%)

Query: 27  CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQL 70
            RF      GC    G   D     C             C   F        G       
Sbjct: 65  LRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYAITAAQ 124

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRG-FEIAVETNG 120
            + + +  +  E E    + +GGEP +    +  + A   R    + + TNG
Sbjct: 125 CERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVIINTNG 176


>gi|302349206|ref|YP_003816844.1| Radical SAM domain protein [Acidilobus saccharovorans 345-15]
 gi|302329618|gb|ADL19813.1| Radical SAM domain protein [Acidilobus saccharovorans 345-15]
          Length = 351

 Score = 42.7 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           LW        + +C +C   F         RY++++L  L+E             +  GG
Sbjct: 2   LWLVFTTGFCNLRCDYCGGSFPSKVVPYTVRYDIEKLKRLVEA------DPQATVIFYGG 55

Query: 94  EPLLQVDV--PLIQALNKRGFEIAVETNGTI 122
           EPL         +  +  R + +   TNGT+
Sbjct: 56  EPLANPRFVEEFMDRVRARRYGVQ--TNGTL 84


>gi|215432709|ref|ZP_03430628.1| putative transferase [Mycobacterium tuberculosis EAS054]
 gi|260184650|ref|ZP_05762124.1| putative transferase [Mycobacterium tuberculosis CPHL_A]
 gi|260198775|ref|ZP_05766266.1| putative transferase [Mycobacterium tuberculosis T46]
 gi|260202931|ref|ZP_05770422.1| putative transferase [Mycobacterium tuberculosis K85]
 gi|289441165|ref|ZP_06430909.1| transferase [Mycobacterium tuberculosis T46]
 gi|289445328|ref|ZP_06435072.1| transferase [Mycobacterium tuberculosis CPHL_A]
 gi|289572380|ref|ZP_06452607.1| transferase [Mycobacterium tuberculosis K85]
 gi|289755860|ref|ZP_06515238.1| transferase [Mycobacterium tuberculosis EAS054]
 gi|289414084|gb|EFD11324.1| transferase [Mycobacterium tuberculosis T46]
 gi|289418286|gb|EFD15487.1| transferase [Mycobacterium tuberculosis CPHL_A]
 gi|289536811|gb|EFD41389.1| transferase [Mycobacterium tuberculosis K85]
 gi|289696447|gb|EFD63876.1| transferase [Mycobacterium tuberculosis EAS054]
          Length = 776

 Score = 42.7 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 18/112 (16%)

Query: 27  CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQL 70
            RF      GC    G   D     C             C   F        G       
Sbjct: 65  LRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYAITAAQ 124

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRG-FEIAVETNG 120
            + + +  +  E E    + +GGEP +    +  + A   R    + + TNG
Sbjct: 125 CERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVIINTNG 176


>gi|215405783|ref|ZP_03417964.1| putative transferase [Mycobacterium tuberculosis 02_1987]
 gi|215413658|ref|ZP_03422326.1| putative transferase [Mycobacterium tuberculosis 94_M4241A]
 gi|289747569|ref|ZP_06506947.1| transferase [Mycobacterium tuberculosis 02_1987]
 gi|294995359|ref|ZP_06801050.1| putative transferase [Mycobacterium tuberculosis 210]
 gi|298527206|ref|ZP_07014615.1| moaA/nifB/pqqE family protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|289688097|gb|EFD55585.1| transferase [Mycobacterium tuberculosis 02_1987]
 gi|298497000|gb|EFI32294.1| moaA/nifB/pqqE family protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|326905568|gb|EGE52501.1| transferase [Mycobacterium tuberculosis W-148]
          Length = 776

 Score = 42.7 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 18/112 (16%)

Query: 27  CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQL 70
            RF      GC    G   D     C             C   F        G       
Sbjct: 65  LRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYAITAAQ 124

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRG-FEIAVETNG 120
            + + +  +  E E    + +GGEP +    +  + A   R    + + TNG
Sbjct: 125 CERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVIINTNG 176


>gi|167627884|ref|YP_001678384.1| radical SAM family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597885|gb|ABZ87883.1| radical SAM family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 353

 Score = 42.7 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 24/112 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       R S++C          +      ++ ++   +I+             VL+
Sbjct: 9   CNLKCV--HCRSSSEC----------EVVGHPDFSTEEGFRIIDNIVELA---NPVLVLS 53

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ--------GIDWICVS 134
           GGEPLL+ D+  L +    +G  +A+ TNG++   +        GI  + +S
Sbjct: 54  GGEPLLRADIFELAKYGANKGLRMALATNGSLVTDEICEKIKNSGISIVSLS 105


>gi|110598407|ref|ZP_01386679.1| Radical SAM [Chlorobium ferrooxidans DSM 13031]
 gi|110339941|gb|EAT58444.1| Radical SAM [Chlorobium ferrooxidans DSM 13031]
          Length = 345

 Score = 42.7 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR C         ++    ++++L  + ++      +E     +T
Sbjct: 18  CNL-----------RCRHC--ASAATTRSRSNELSLEELLSICDQFPDLFVQE---VDIT 61

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ +   +   LNK G  + + TNG++
Sbjct: 62  GGEPLLRPEWFAVTTHLNKLGIPVRMVTNGSL 93


>gi|258592360|emb|CBE68669.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 400

 Score = 42.7 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 16/112 (14%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL                 T F            ++ +  +++E    G    RY  +
Sbjct: 60  GCNLRCKMCGQWGDTG-----TYFNYDTAKLKRELKLEVIEGVVQELVPHGL---RYVDI 111

Query: 91  TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134
            GGE  L    + L++ L +    +   TNGT+           G+D I +S
Sbjct: 112 EGGETFLYPQIIELLRMLKRHRLFVKPVTNGTLLKKYAGELIDTGVDAIHIS 163


>gi|238018827|ref|ZP_04599253.1| hypothetical protein VEIDISOL_00686 [Veillonella dispar ATCC 17748]
 gi|237864593|gb|EEP65883.1| hypothetical protein VEIDISOL_00686 [Veillonella dispar ATCC 17748]
          Length = 337

 Score = 42.7 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 21/107 (19%)

Query: 27  CRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            R S    CN             C +C         ++    +VD+   ++      G K
Sbjct: 28  VRLSLTDACNFC-----------CPYC-RPAEITPQSQTQLLSVDEWMTILGAFHRIGVK 75

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGFE--IAVETNGTIEPPQG 127
             R   LTGGEPLL   +  L+  +   G+   I++ TNG++   + 
Sbjct: 76  AVR---LTGGEPLLYPHIEELLTRIKDTGWFEDISMTTNGSLLASRA 119


>gi|226311193|ref|YP_002771087.1| molybdenum cofactor biosynthesis protein A [Brevibacillus brevis
           NBRC 100599]
 gi|254811536|sp|C0Z9B3|MOAA_BREBN RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|226094141|dbj|BAH42583.1| molybdenum cofactor biosynthesis protein A [Brevibacillus brevis
           NBRC 100599]
          Length = 339

 Score = 42.7 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           D+ + +CR+C        D +F+     +      +++  L +     G  + R   +TG
Sbjct: 22  DKCNFRCRYCMPADIFGPDFEFL----PQSKLLTFEEITRLTQIFTSLGVGKIR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134
           GEPL++ ++P LI+ + +  G + IA+ TNG++           G+D + VS
Sbjct: 75  GEPLMRRNLPELIRMIREVEGVQDIAMTTNGSLLSRHAQALKEAGLDRVTVS 126


>gi|163783468|ref|ZP_02178459.1| Radical SAM [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881232|gb|EDP74745.1| Radical SAM [Hydrogenivirga sp. 128-5-R1-1]
          Length = 362

 Score = 42.7 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 51/111 (45%), Gaps = 25/111 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL+           C+ C   +        G  ++D++  + ++      ++ R+ +L+
Sbjct: 33  CNLY-----------CKHC---YSSANQETKGELSLDEIRKVADDLV---NEKVRFAILS 75

Query: 92  GGEPLLQVDVPLIQA-LNKRGFEIAVETNGTI-------EPPQGIDWICVS 134
           GGEPLL+ D+  + A L ++G +  + TNG +          +  D++ +S
Sbjct: 76  GGEPLLREDIYDVSAILREKGIKTYLSTNGLLINRDNVKLIRESFDYVGIS 126


>gi|320167238|gb|EFW44137.1| molybdenum cofactor synthesis 1 isoform 1 [Capsaspora owczarzaki
           ATCC 30864]
          Length = 517

 Score = 42.7 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C  +        G     D++  L +     G  + R   LT
Sbjct: 53  CNL-----------RCVYCMPEHGVELSPNGALLTTDEIIRLAQLFVSQGVDKIR---LT 98

Query: 92  GGEPLLQVDV-PLIQALNKRG--FEIAVETNG 120
           GGEP ++ D+ PL++ L +      IA+ TNG
Sbjct: 99  GGEPTVRKDLVPLVERLGQIDGLKSIALTTNG 130


>gi|302205485|gb|ADL09827.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Corynebacterium pseudotuberculosis C231]
          Length = 193

 Score = 42.7 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 29/126 (23%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
             A F    GC L           +C +C      +Q    G +++ +   L+  +    
Sbjct: 1   MAAAF--TQGCPL-----------RCVYC--HNSQLQAFTPGAHSLAEFLSLLSSRHGLI 45

Query: 82  EKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG---------TIEPPQGIDWI 131
           +      V++GGEP     +   I A++  GF + + T G           +P    DW+
Sbjct: 46  DAA----VISGGEPTAVRGLGDAIAAIHNIGFPVGIHTCGYAPSRIAELLRDPATTPDWV 101

Query: 132 CVSPKA 137
            +  KA
Sbjct: 102 GLDIKA 107


>gi|283131362|dbj|BAI63366.1| putative glycyl-radical activating family protein [Streptococcus
           dysgalactiae subsp. equisimilis]
 gi|283131422|dbj|BAI63423.1| putative glycyl-radical activating family protein [Streptococcus
           dysgalactiae subsp. equisimilis]
 gi|323128119|gb|ADX25416.1| glycyl-radical activating family protein [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 329

 Score = 42.7 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
           G    + +L  +I E     +  G    L+GGE L Q +  + L++A  + G   AVET 
Sbjct: 127 GESKTISELMAIIHEDDAFYDMSGGGVTLSGGECLAQPEGAIALLRACKEDGLNTAVETA 186

Query: 120 G 120
           G
Sbjct: 187 G 187


>gi|282882974|ref|ZP_06291578.1| radical SAM domain protein [Peptoniphilus lacrimalis 315-B]
 gi|281297181|gb|EFA89673.1| radical SAM domain protein [Peptoniphilus lacrimalis 315-B]
          Length = 449

 Score = 42.7 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 29/113 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRY-C 88
           CNL           +C++C   F      KG R   ++    D ++    +         
Sbjct: 103 CNL-----------RCKYC---FASQGDFKGKRLLMDLQTGKDALDFLIKSSGYRRNLEV 148

Query: 89  VLTGGEPLLQVDVPLIQALNKRG----------FEIAVETNGTIEPPQGIDWI 131
              GGEPL+  +  +++ L + G          F   + TNGT      ID+I
Sbjct: 149 DFFGGEPLM--NFEVVKKLVEYGRIQEKKYNKHFRFTITTNGTYLTDDKIDFI 199


>gi|258514536|ref|YP_003190758.1| Radical SAM domain-containing protein [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778241|gb|ACV62135.1| Radical SAM domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 396

 Score = 42.7 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C  C   +      K  G     +  + I++     E +    + 
Sbjct: 47  CNL-----------KCIHC---YSNSDNKKYEGELTTAEAKNFIKDL---AEFKVPVILF 89

Query: 91  TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           +GGEPL++ D   L    +  G    + TNGT+
Sbjct: 90  SGGEPLIRKDFFELAACASDLGIRCTISTNGTL 122


>gi|15610865|ref|NP_218246.1| transferase [Mycobacterium tuberculosis H37Rv]
 gi|15843350|ref|NP_338387.1| moaA/nifB/pqqE family protein [Mycobacterium tuberculosis CDC1551]
 gi|148663595|ref|YP_001285118.1| putative transferase [Mycobacterium tuberculosis H37Ra]
 gi|148824934|ref|YP_001289688.1| transferase [Mycobacterium tuberculosis F11]
 gi|218755512|ref|ZP_03534308.1| putative transferase [Mycobacterium tuberculosis GM 1503]
 gi|254552842|ref|ZP_05143289.1| transferase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289555994|ref|ZP_06445204.1| transferase [Mycobacterium tuberculosis KZN 605]
 gi|289763910|ref|ZP_06523288.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|297636409|ref|ZP_06954189.1| transferase [Mycobacterium tuberculosis KZN 4207]
 gi|297733403|ref|ZP_06962521.1| transferase [Mycobacterium tuberculosis KZN R506]
 gi|306778088|ref|ZP_07416425.1| transferase [Mycobacterium tuberculosis SUMu001]
 gi|306778620|ref|ZP_07416957.1| transferase [Mycobacterium tuberculosis SUMu002]
 gi|306786643|ref|ZP_07424965.1| transferase [Mycobacterium tuberculosis SUMu003]
 gi|306791328|ref|ZP_07429630.1| transferase [Mycobacterium tuberculosis SUMu005]
 gi|306969972|ref|ZP_07482633.1| transferase [Mycobacterium tuberculosis SUMu009]
 gi|313660734|ref|ZP_07817614.1| transferase [Mycobacterium tuberculosis KZN V2475]
 gi|2960153|emb|CAA18051.1| POSSIBLE TRANSFERASE [Mycobacterium tuberculosis H37Rv]
 gi|13883713|gb|AAK48201.1| moaA/nifB/pqqE family protein [Mycobacterium tuberculosis CDC1551]
 gi|148507747|gb|ABQ75556.1| putative transferase [Mycobacterium tuberculosis H37Ra]
 gi|148723461|gb|ABR08086.1| hypothetical transferase [Mycobacterium tuberculosis F11]
 gi|289440626|gb|EFD23119.1| transferase [Mycobacterium tuberculosis KZN 605]
 gi|289711416|gb|EFD75432.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|308213614|gb|EFO73013.1| transferase [Mycobacterium tuberculosis SUMu001]
 gi|308328347|gb|EFP17198.1| transferase [Mycobacterium tuberculosis SUMu002]
 gi|308328750|gb|EFP17601.1| transferase [Mycobacterium tuberculosis SUMu003]
 gi|308340085|gb|EFP28936.1| transferase [Mycobacterium tuberculosis SUMu005]
 gi|308352525|gb|EFP41376.1| transferase [Mycobacterium tuberculosis SUMu009]
 gi|328460503|gb|AEB05926.1| transferase [Mycobacterium tuberculosis KZN 4207]
          Length = 776

 Score = 42.7 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 18/112 (16%)

Query: 27  CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQL 70
            RF      GC    G   D     C             C   F        G       
Sbjct: 65  LRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYAITAAQ 124

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRG-FEIAVETNG 120
            + + +  +  E E    + +GGEP +    +  + A   R    + + TNG
Sbjct: 125 CERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVIINTNG 176


>gi|305662866|ref|YP_003859154.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
 gi|304377435|gb|ADM27274.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
          Length = 280

 Score = 42.7 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 38/169 (22%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           GCNL            C +C +  +  +  + G  Y+   +A  +    I  E   R+  
Sbjct: 48  GCNLM-----------CIYCWSYRINSMYRSIGVFYSPYDVAHKL--MTIARENRYRFIR 94

Query: 90  LTGGEP------LLQVDVPLIQA-LNKRGFEIAVETNGTI---------EPPQGIDWIC- 132
           +TGGEP      LLQV   L+   +   G  I +ETNG +         E     D+I  
Sbjct: 95  ITGGEPTLAYTHLLQVLENLVSMGIRDIGRFI-IETNGILLGYKPDIIRELVNYNDFITV 153

Query: 133 -VSPKAGCDL---KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177
            VS K   +     + G    K  +    +  +N + +  +   + P+ 
Sbjct: 154 RVSLKGCSEEEFSIVTGAD--KNFYSYQLMGIKNLVDYSIDTRVVIPIS 200


>gi|188527386|ref|YP_001910073.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           Shi470]
 gi|188143626|gb|ACD48043.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           Shi470]
          Length = 293

 Score = 42.7 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 56/157 (35%), Gaps = 22/157 (14%)

Query: 52  TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKR 110
           T      G       +D + + ++     G K+ R   +TGGEPLL+      I  L+  
Sbjct: 4   TPLNFFDGE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDEFIAKLHAY 58

Query: 111 GFEIA--VETNGTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQELKLVFPQVNV 158
             E+A  + TNG +      D        + V   S K+   LKI     LK     +  
Sbjct: 59  NKEVALVLSTNGFLLKKMAKDLKNAGLSRVNVSLDSLKSDRVLKISQKDALKNTLEGIEE 118

Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
           S E  +     + ++  M     +E   L + Y    
Sbjct: 119 SLEVGLKL---KLNMVVMKSVNDDEILEL-LEYAKNR 151


>gi|113478316|ref|YP_724377.1| radical SAM family protein [Trichodesmium erythraeum IMS101]
 gi|110169364|gb|ABG53904.1| Radical SAM [Trichodesmium erythraeum IMS101]
          Length = 386

 Score = 42.7 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 45  AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PL 103
           A C FC  +F         +     L + ++   I   +  RY V TGGEP L  ++   
Sbjct: 57  ANCGFC--NFAR-DTFPKEKTKFVNLNEGLDSINILFREGIRYLVFTGGEPTLNPNLISF 113

Query: 104 IQALNKRGFEIAVETNGTIEPPQGI 128
           +    + G ++ V TNG +  P+ I
Sbjct: 114 VDHATRLGIKVMVVTNGGLLTPKKI 138


>gi|308274253|emb|CBX30852.1| hypothetical protein N47_E43640 [uncultured Desulfobacterium sp.]
          Length = 342

 Score = 42.3 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR C       + T   + +V++     +E             + 
Sbjct: 38  CNL-----------RCRGCG-KIAYPEETLNRQLSVEECLSASKE------CPAPVVSIA 79

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPLL  D+P ++Q L      + + TN  +     ID    S     ++ + G +E
Sbjct: 80  GGEPLLHTDIPRIVQKLVAHKKFVYLCTN-ALLAANRIDEFQPSQYLAFNVHLDGLEE 136


>gi|167616556|ref|ZP_02385187.1| radical SAM domain protein protein [Burkholderia thailandensis Bt4]
          Length = 455

 Score = 42.3 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 24/116 (20%)

Query: 26  FCRF---SGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           F R      CNL            C + D+  +V  +G      +VD+ + LI+E    G
Sbjct: 122 FMRLHLTQRCNLTC--------VHC-YADSSPYVTSEGE----ISVDRWSRLIDEFADAG 168

Query: 82  EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI--CVS 134
            +     + TGGE L+      LI+  ++R  ++ + +NG +   + +D I  CV 
Sbjct: 169 GER---VLFTGGEALIYKGCDLLIRKAHERALDVTLFSNG-LLIDRYLDLIRACVD 220


>gi|304408845|ref|ZP_07390466.1| Radical SAM domain protein [Shewanella baltica OS183]
 gi|304352666|gb|EFM17063.1| Radical SAM domain protein [Shewanella baltica OS183]
          Length = 286

 Score = 42.3 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 17/105 (16%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCV 89
           NL +       S +C  CDT           +   Y V+++  ++  Q            
Sbjct: 60  NLNNKPRIRWDSERCSQCDTCLAVCPKQASPKVTHYTVEEILGILHSQR----HFINGIT 115

Query: 90  LTGGEPLLQVDVPLIQALNK--------RGFEIAVETNGTIEPPQ 126
           ++GGE  LQ  +P I AL K              ++TNG++    
Sbjct: 116 VSGGEASLQ--LPFILALFKGIKATESLSHLTCMLDTNGSLSLTG 158


>gi|323341138|ref|ZP_08081386.1| pyruvate formate-lyase activating enzyme [Lactobacillus ruminis
           ATCC 25644]
 gi|323091559|gb|EFZ34183.1| pyruvate formate-lyase activating enzyme [Lactobacillus ruminis
           ATCC 25644]
          Length = 274

 Score = 42.3 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 31/106 (29%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLI---EE 76
            RF     GCN+           +C+FC   DT     +   G     D++        E
Sbjct: 36  IRFVVFMQGCNM-----------RCKFCHNPDT----WKKNVGTTMTADEVLKKALPYRE 80

Query: 77  QWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
            W           L+GGE LLQ +  + L     + G    ++T G
Sbjct: 81  FWGEQGG----ITLSGGEILLQPEFALDLFTKCKELGISTCLDTCG 122


>gi|297155501|gb|ADI05213.1| pyrroloquinoline quinone biosynthesis protein PqqE [Streptomyces
           bingchenggensis BCW-1]
          Length = 368

 Score = 42.3 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 17/91 (18%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GC L            C +C      ++  +      ++ A+++ +    G        L
Sbjct: 17  GCPL-----------HCPYCSNPLELVR--RSRELTGEEWAEVLRQAGELGVVHTH---L 60

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           +GGEPLL+ D+  +  A    G    + T+G
Sbjct: 61  SGGEPLLRTDLETITAAAESAGIYTQLVTSG 91


>gi|303327190|ref|ZP_07357632.1| putative pyruvate formate-lyase activating enzyme [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863178|gb|EFL86110.1| putative pyruvate formate-lyase activating enzyme [Desulfovibrio
           sp. 3_1_syn3]
          Length = 297

 Score = 42.3 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119
           G   ++++L   +++     +       L+GGEP  Q +  L  ++ L   G    VET+
Sbjct: 102 GKTMSLEELFRELKKDTSYYQMSSGGVTLSGGEPFAQGERLLDVLEGLKCLGLGTVVETS 161

Query: 120 GTIEP 124
           G + P
Sbjct: 162 GLVPP 166


>gi|322508437|gb|ADX03891.1| pqqE [Acinetobacter baumannii 1656-2]
          Length = 384

 Score = 42.3 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 60/174 (34%), Gaps = 20/174 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    D+   +          +  D+ E+    G  +  +  
Sbjct: 8   PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFDVFEQARQMGAVQLGF-- 61

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140
            +GGEPL+ Q    L+   ++ GF   + T+G        +     G+D I +S +A   
Sbjct: 62  -SGGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTEQRISHLKQAGLDHIQISFQASDP 120

Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
           +        K  F Q          +D+    L  +      +  +  I  C +
Sbjct: 121 VVNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIDKIIELCLE 173


>gi|187927397|ref|YP_001897884.1| pyrroloquinoline quinone biosynthesis protein PqqE [Ralstonia
           pickettii 12J]
 gi|187724287|gb|ACD25452.1| coenzyme PQQ biosynthesis protein E [Ralstonia pickettii 12J]
          Length = 386

 Score = 42.3 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
            LW   E   R    C FC   +  +    +    +  Q  D++ +    G  +  +   
Sbjct: 17  PLWLLAELTHRCPLHCVFC---YNPVDFARRRDELSTAQWIDVLRQARQLGAAQLGF--- 70

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           +GGEPLL+ D+  L+    + GF   + T+G
Sbjct: 71  SGGEPLLRDDLEELVAEGRQLGFYTNLITSG 101


>gi|222100726|ref|YP_002535294.1| AstB/chuR-related protein [Thermotoga neapolitana DSM 4359]
 gi|221573116|gb|ACM23928.1| AstB/chuR-related protein [Thermotoga neapolitana DSM 4359]
          Length = 482

 Score = 42.3 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 21/92 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C   + G+ G K    + D++ D++++    G       ++T
Sbjct: 120 CNL-----------NCVGC---YAGLYGRKYE-LSHDEVRDILKQANDLGIYFF---IIT 161

Query: 92  GGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
           GGEP      + + +      F +   TNGT+
Sbjct: 162 GGEPFFWPHLMDIFEEFKDSYFLVY--TNGTL 191


>gi|156934609|ref|YP_001438525.1| pyruvate formate lyase-activating enzyme 1 [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156532863|gb|ABU77689.1| hypothetical protein ESA_02443 [Cronobacter sakazakii ATCC BAA-894]
          Length = 246

 Score = 42.3 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V++L   +          G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEELMKEVVTYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 72  GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 108


>gi|170723984|ref|YP_001751672.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           putida W619]
 gi|169761987|gb|ACA75303.1| coenzyme PQQ biosynthesis protein E [Pseudomonas putida W619]
          Length = 382

 Score = 42.3 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C          +G   +  Q   ++ E    G  +      +
Sbjct: 16  PLWLLAELTYRCPLQCPYCSNPLDF--AEQGKELSTAQWFKVMAEAREMGAAQ---IGFS 70

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    + G+   + T+G
Sbjct: 71  GGEPLVRQDLAELIGEARRLGYYTNLITSG 100


>gi|330008426|ref|ZP_08306239.1| glycyl-radical enzyme activating protein family protein [Klebsiella
           sp. MS 92-3]
 gi|328535136|gb|EGF61644.1| glycyl-radical enzyme activating protein family protein [Klebsiella
           sp. MS 92-3]
          Length = 299

 Score = 42.3 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           G   +V+++   +       ++ G    L+GGEP +   +   L +A ++ G   AVET
Sbjct: 101 GEEKSVEEIMATVLRDKPFYDRSGGGITLSGGEPFMNPTLAQALFEASHQAGIHTAVET 159


>gi|70607223|ref|YP_256093.1| molybdenum cofactor biosynthesis protein A [Sulfolobus
           acidocaldarius DSM 639]
 gi|76363232|sp|Q4J8T0|MOAA_SULAC RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|68567871|gb|AAY80800.1| molybdenum cofactor biosynthesis protein A [Sulfolobus
           acidocaldarius DSM 639]
          Length = 313

 Score = 42.3 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 8/76 (10%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQ 105
           C FC    +  +       + DQ++ L+ +  +  E   R   LTGGEP L+ D+P +I 
Sbjct: 24  CFFC---HMEGENDGDSLLSADQIS-LVAQIGM--EFGIRTVKLTGGEPTLRRDLPEIIS 77

Query: 106 ALNKRGF-EIAVETNG 120
            L + G  E+++ TNG
Sbjct: 78  KLKEVGIKEVSMTTNG 93


>gi|262041082|ref|ZP_06014300.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041532|gb|EEW42585.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 299

 Score = 42.3 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           G   +V+++   +       ++ G    L+GGEP +   +   L +A ++ G   AVET
Sbjct: 101 GEEKSVEEIMATVLRDKPFYDRSGGGITLSGGEPFMNPTLAQALFEASHQAGIHTAVET 159


>gi|225420210|ref|ZP_03762513.1| hypothetical protein CLOSTASPAR_06553 [Clostridium asparagiforme
           DSM 15981]
 gi|225041156|gb|EEG51402.1| hypothetical protein CLOSTASPAR_06553 [Clostridium asparagiforme
           DSM 15981]
          Length = 457

 Score = 42.3 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 14/105 (13%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYN---VDQLADLIEEQWITGEKEGRYCVLTG 92
                 R + +C  C   +V  Q +  G  +      L D I E    G       +LTG
Sbjct: 128 CLELTYRCNEKCIHC---YVDDQESGAGEMSFSDYRTLLDEIRELGCMG------VLLTG 178

Query: 93  GEPLLQVDVPLIQALNKR-GFEIAVETNGTIEPPQGID-WICVSP 135
           GEP L  D   I    +R G  + + TNG       +D  I + P
Sbjct: 179 GEPTLHRDFFEIAFYARRIGLMVDIYTNGLYVDDGMMDRLISLRP 223


>gi|257051819|ref|YP_003129652.1| Radical SAM domain protein [Halorhabdus utahensis DSM 12940]
 gi|256690582|gb|ACV10919.1| Radical SAM domain protein [Halorhabdus utahensis DSM 12940]
          Length = 401

 Score = 42.3 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 51  DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK 109
           DT      G   G     +   +I++    G    R+    GGEPLL+ D+  LI+  ++
Sbjct: 56  DTA---GPGHGDGELTTGEATAVIDDLAGYGVAAIRFA---GGEPLLRDDLETLIERASE 109

Query: 110 RGFEIAVETNGTI 122
            G    + TNGT+
Sbjct: 110 AGLRTELSTNGTL 122


>gi|330956955|gb|EGH57215.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 389

 Score = 42.3 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C       +  +G     +Q   +++E    G  +      +
Sbjct: 22  PLWLLAELTYRCPLQCPYCSNPLDFAK--QGLELTTEQWFKVMQEAREMGAAQ---IGFS 76

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    + GF   + T+G
Sbjct: 77  GGEPLVRQDLAELIAEARRLGFYTNLITSG 106


>gi|260597299|ref|YP_003209870.1| pyruvate formate lyase-activating enzyme 1 [Cronobacter turicensis
           z3032]
 gi|260216476|emb|CBA29623.1| Pyruvate formate-lyase 1-activating enzyme [Cronobacter turicensis
           z3032]
          Length = 246

 Score = 42.3 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V++L   +          G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEELMKEVVTYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 72  GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 108


>gi|256830133|ref|YP_003158861.1| glycyl-radical enzyme activating protein family [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579309|gb|ACU90445.1| glycyl-radical enzyme activating protein family [Desulfomicrobium
           baculatum DSM 4028]
          Length = 306

 Score = 42.3 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           G ++ V ++   IE++             +GGEPL Q D    L+ A        AV+T+
Sbjct: 108 GRKWTVLEVMAEIEKETPFFAGNQGGVTFSGGEPLAQPDFLEALLVACKDLDLHRAVDTS 167

Query: 120 G 120
           G
Sbjct: 168 G 168


>gi|152969487|ref|YP_001334596.1| pyruvate formate lyase-activating enzyme 1 [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206581035|ref|YP_002239448.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella pneumoniae
           342]
 gi|238893959|ref|YP_002918693.1| pyruvate formate lyase-activating enzyme 1 [Klebsiella pneumoniae
           NTUH-K2044]
 gi|288936299|ref|YP_003440358.1| pyruvate formate-lyase activating enzyme [Klebsiella variicola
           At-22]
 gi|290510646|ref|ZP_06550016.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella sp. 1_1_55]
 gi|330014097|ref|ZP_08307854.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella sp. MS 92-3]
 gi|150954336|gb|ABR76366.1| pyruvate formate lyase activating enzyme 1 [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206570093|gb|ACI11869.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella pneumoniae
           342]
 gi|238546275|dbj|BAH62626.1| pyruvate formate lyase activating enzyme 1 [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|288891008|gb|ADC59326.1| pyruvate formate-lyase activating enzyme [Klebsiella variicola
           At-22]
 gi|289777362|gb|EFD85360.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella sp. 1_1_55]
 gi|328533278|gb|EGF60031.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella sp. MS 92-3]
          Length = 246

 Score = 42.3 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V++L   +          G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEELMKEVVTYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 72  GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 108


>gi|320101319|ref|YP_004176911.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfurococcus mucosus DSM 2162]
 gi|319753671|gb|ADV65429.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfurococcus mucosus DSM 2162]
          Length = 248

 Score = 42.3 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 16/99 (16%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
             GCNL      +                        +VD+L   ++     G  +  + 
Sbjct: 26  LCGCNLKCPFCHNWRL----------ATGDREVCRPLDVDRLLSEVDSSK--GFIDYLHV 73

Query: 89  VLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPP 125
             TGGEPLLQ      L + + + G  ++V TN T+  P
Sbjct: 74  --TGGEPLLQYRGLAGLFRRVKEIGVPVSVNTNLTLYKP 110


>gi|312794519|ref|YP_004027442.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181659|gb|ADQ41829.1| Radical SAM domain protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 430

 Score = 42.3 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 17/109 (15%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
           C+ C   +   +      +++  +   ++          +  +++GGEP L+ D   ++ 
Sbjct: 101 CKGC---YSFNKYRNKEDFDL-SVDVFVDSIKQLKNYGLKRVIISGGEPTLRDD---LEV 153

Query: 107 LNKRGFEIAVE-----TNGTIEPPQGIDWI--CVSPKAGCDLKIKGGQE 148
           L +    I++E     TNG   P + I+ +  CV       + I G  E
Sbjct: 154 LLREIKNISIEYVCLITNGIYFPEKLINVVKECVD---EVSVSIDGYNE 199


>gi|152969415|ref|YP_001334524.1| putative pyruvate formate lyase activating enzyme [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238893884|ref|YP_002918618.1| putative pyruvate formate lyase activating enzyme [Klebsiella
           pneumoniae NTUH-K2044]
 gi|150954264|gb|ABR76294.1| putative pyruvate formate lyase activating enzyme [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238546200|dbj|BAH62551.1| putative pyruvate formate lyase activating enzyme [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 299

 Score = 42.3 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           G   +V+++   +       ++ G    L+GGEP +   +   L +A ++ G   AVET
Sbjct: 101 GEEKSVEEIMATVLRDKPFYDRSGGGITLSGGEPFMNPTLAQALFEASHQAGIHTAVET 159


>gi|237748413|ref|ZP_04578893.1| molybdenum cofactor biosynthesis protein A [Oxalobacter formigenes
           OXCC13]
 gi|229379775|gb|EEO29866.1| molybdenum cofactor biosynthesis protein A [Oxalobacter formigenes
           OXCC13]
          Length = 372

 Score = 42.3 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 31/151 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  F+          + +++A L       G ++ R   LTG
Sbjct: 50  DRCNFRCVYCMPKQVFGKDFRFI----PHSDMLSFEEIARLARLFVARGVEKIR---LTG 102

Query: 93  GEPLLQVDVP-LIQAL------NKRGFEIAVETNGTIEP-------PQGIDWICVSPKAG 138
           GEPLL+ +V  LI+ L        R  ++ + TNG++           G+  I VS  A 
Sbjct: 103 GEPLLRKNVERLIEQLSRLKTPEGRPIDLTLTTNGSMLAKKAQTLFDAGLKRITVSLDAL 162

Query: 139 CDLKIKGGQELKLVFPQV--NVSPENYIGFD 167
            D   +   ++      V   +     +GFD
Sbjct: 163 DDTVFRQMNDVDFSVRDVLHGIDTALAVGFD 193


>gi|194366021|ref|YP_002028631.1| molybdenum cofactor biosynthesis protein A [Stenotrophomonas
           maltophilia R551-3]
 gi|226707388|sp|B4SL67|MOAA_STRM5 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|194348825|gb|ACF51948.1| molybdenum cofactor biosynthesis protein A [Stenotrophomonas
           maltophilia R551-3]
          Length = 326

 Score = 42.3 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 13/91 (14%)

Query: 46  QCRFC--DTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101
           +C +C  D    G Q     R+  VD++A L+      G  + R   LTGGEP L+ D+ 
Sbjct: 26  RCSYCLPD----GYQVDGRPRFLQVDEIARLVRAFAALGMSKIR---LTGGEPSLRKDLD 78

Query: 102 PLIQALNKR-GFE-IAVETNGTIEPPQGIDW 130
            +I  +    G   +A+ TNGT+ P +   W
Sbjct: 79  EIIATVAAAPGIRKVAITTNGTLLPRRLPGW 109


>gi|70732962|ref|YP_262735.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           fluorescens Pf-5]
 gi|83288391|sp|Q4K4U8|PQQE_PSEF5 RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|68347261|gb|AAY94867.1| coenzyme PQQ synthesis protein E [Pseudomonas fluorescens Pf-5]
          Length = 389

 Score = 42.3 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C          +G   + +Q   +  E    G  +  +   +
Sbjct: 23  PLWLLAELTYRCPLQCPYCSNPLDF--AEQGKELSTEQWIKVFREAREMGAAQLGF---S 77

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    K GF   + T+G
Sbjct: 78  GGEPLVRQDLAELIGEARKLGFYTNLITSG 107


>gi|311281574|ref|YP_003943805.1| glycyl-radical enzyme activating protein family [Enterobacter
           cloacae SCF1]
 gi|308750769|gb|ADO50521.1| glycyl-radical enzyme activating protein family [Enterobacter
           cloacae SCF1]
          Length = 291

 Score = 42.3 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 62/193 (32%), Gaps = 31/193 (16%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCN-----------LWSGREQDRLSAQCRFC-- 50
           IF     +L  G G       VF  F GC            L       R  ++C  C  
Sbjct: 23  IFNIQRYSLNDGRGIRT---VVF--FKGCPHRCPWCANPESLSPHIHTVRRESKCLHCAP 77

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D +       +  G    +D L   + +  +     G    L+GGE L+Q       
Sbjct: 78  CLRDANECPSGAFENIGRDVTLDALVQEVMKDDVFFRASGGGVTLSGGEVLMQAPFAARF 137

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP-QVNVSPEN 162
           +  L + G   A+ET G     + +       +   DLKI   ++ KLV    +     N
Sbjct: 138 LARLRQLGVHTAMETAGDAPLSRLLPVANQCDEVLFDLKIMDARQAKLVLNLNLPRVLAN 197

Query: 163 YIGFDFERFSLQP 175
           +         + P
Sbjct: 198 FRHLAASGICVIP 210


>gi|239909068|ref|YP_002955810.1| ribonucleoside-triphosphate reductase activating enzyme
           [Desulfovibrio magneticus RS-1]
 gi|239798935|dbj|BAH77924.1| ribonucleoside-triphosphate reductase activating enzyme
           [Desulfovibrio magneticus RS-1]
          Length = 256

 Score = 42.3 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 35/116 (30%), Gaps = 24/116 (20%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR-YC 88
            GC              C +C               +  +        W+ G K      
Sbjct: 52  QGCP-----------WGCPYC------HNEPLREITDAVEHDSASVLAWLEGRKGLLDAV 94

Query: 89  VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAG 138
           V +GGEP LQ  +  ++ A+   GF   + T G             DW+ +  KA 
Sbjct: 95  VFSGGEPTLQDGLADMLAAVRAMGFHTGLHTTGMFPKALSAVLPLCDWVGLDVKAP 150


>gi|17231761|ref|NP_488309.1| hypothetical protein alr4269 [Nostoc sp. PCC 7120]
 gi|17133404|dbj|BAB75968.1| alr4269 [Nostoc sp. PCC 7120]
          Length = 338

 Score = 42.3 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
                 + GGEPLL   +  +++ L +R   + + TNG +   + +D    SP     + 
Sbjct: 72  GAPVVSIPGGEPLLHPQIDEIVKGLVERKKYVYLCTNG-LLLEKSLDKFQPSPYLTFSVH 130

Query: 143 IKGGQE 148
           + G QE
Sbjct: 131 LDGLQE 136


>gi|322372738|ref|ZP_08047274.1| putative coenzyme PQQ synthesis protein [Streptococcus sp. C150]
 gi|321277780|gb|EFX54849.1| putative coenzyme PQQ synthesis protein [Streptococcus sp. C150]
          Length = 372

 Score = 42.3 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L      +R +  C +C +   G   +K G  +V++L  +  E  + G        +TGG
Sbjct: 10  LVDVCVTNRCNLNCSYC-SAEAGPFASKKGEMSVEKLDSVFRELDLMGVPR---VGVTGG 65

Query: 94  EPLLQVD-VPLIQALNKRGFEIAVETNG 120
           EP ++ D + +++A N+  F   + TNG
Sbjct: 66  EPFMREDILDILKAFNQYRFAKVLNTNG 93


>gi|298675495|ref|YP_003727245.1| radical SAM domain-containing protein [Methanohalobium evestigatum
           Z-7303]
 gi|298288483|gb|ADI74449.1| Radical SAM domain protein [Methanohalobium evestigatum Z-7303]
          Length = 205

 Score = 42.3 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNV---DQLADLIEEQWITGEKEGRYCVLTG-GEPL 96
           +R +A+C FC        G  G    +     + ++ +        + R  V TG GEP 
Sbjct: 29  NRCTARCVFC--VRDLSDGVYGYNLRLLYEPSVEEIKQALEKNNFLKYREIVFTGFGEPT 86

Query: 97  --LQVDVPLIQALNKRGFEIAVETNG 120
             L   + LI+ L   G  + ++TNG
Sbjct: 87  VRLDDMLSLIRWLKGHGAYVRLDTNG 112


>gi|262040998|ref|ZP_06014220.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259041692|gb|EEW42741.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 246

 Score = 42.3 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V++L   +          G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEELMKEVVTYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 72  GGVTASGGEAILQAEFVHDWFRACKKEGIHTCLDTNG 108


>gi|225869329|ref|YP_002745277.1| Radical SAM superfamily protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702605|emb|CAX00633.1| Radical SAM superfamily protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 372

 Score = 42.3 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L      +R +  C +C +   G   +K G  +V++L  +  E  + G        +TGG
Sbjct: 10  LVDVCVTNRCNLNCSYC-SAEAGPFASKKGEMSVEKLDSVFRELDLMGVPR---VGVTGG 65

Query: 94  EPLLQVD-VPLIQALNKRGFEIAVETNG 120
           EP ++ D + +++A N+  F   + TNG
Sbjct: 66  EPFMREDILDILKAFNQYRFAKVLNTNG 93


>gi|254252868|ref|ZP_04946186.1| Molybdenum cofactor biosynthesis enzyme [Burkholderia dolosa
           AUO158]
 gi|124895477|gb|EAY69357.1| Molybdenum cofactor biosynthesis enzyme [Burkholderia dolosa
           AUO158]
          Length = 369

 Score = 42.3 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 25/114 (21%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +  +       +++ + +   ++    E     +TGGE
Sbjct: 45  DRCNFRCVYCMPREVFDKDYPFLPHS--ALLAHEEI-ERVARLFVAHGVEK--IRITGGE 99

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           PLL+ ++  LI+ L +      R  ++ + TNG++           G+  + VS
Sbjct: 100 PLLRKNLEFLIERLARLTTHDGRPLDLTLTTNGSLLARKARALKDAGLTRVTVS 153


>gi|31794901|ref|NP_857394.1| transferase [Mycobacterium bovis AF2122/97]
 gi|121639645|ref|YP_979869.1| putative transferase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224992141|ref|YP_002646830.1| putative transferase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31620499|emb|CAD95942.1| POSSIBLE TRANSFERASE [Mycobacterium bovis AF2122/97]
 gi|121495293|emb|CAL73779.1| Possible transferase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224775256|dbj|BAH28062.1| putative transferase [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 776

 Score = 42.3 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 32/112 (28%), Gaps = 18/112 (16%)

Query: 27  CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQL 70
            RF      GC    G   D     C             C   F        G       
Sbjct: 65  LRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYAITAAQ 124

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRG-FEIAVETNG 120
            + + +  +  E E    + +GGEP +    +  + A   R    I + TNG
Sbjct: 125 CERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTIIINTNG 176


>gi|254482495|ref|ZP_05095734.1| molybdenum cofactor biosynthesis protein A [marine gamma
           proteobacterium HTCC2148]
 gi|214037186|gb|EEB77854.1| molybdenum cofactor biosynthesis protein A [marine gamma
           proteobacterium HTCC2148]
          Length = 346

 Score = 42.3 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 13/87 (14%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D +FV     K    ++++L  +       G  + R   LTGGEPL+
Sbjct: 36  DRCDFRCVYCMAEDMEFV----PKAEVLSLEELYQVARAFTELGVGKIR---LTGGEPLI 88

Query: 98  QVDV-PLIQALNKR-GF-EIAVETNGT 121
           + +V  LI+ + +  G  ++A+ TNG+
Sbjct: 89  RNNVMSLIKRMGELPGLDQLAITTNGS 115


>gi|147678756|ref|YP_001212971.1| pyruvate-formate lyase-activating enzyme [Pelotomaculum
           thermopropionicum SI]
 gi|146274853|dbj|BAF60602.1| pyruvate-formate lyase-activating enzyme [Pelotomaculum
           thermopropionicum SI]
          Length = 303

 Score = 42.3 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           G R +VD++ ++I++     +  G    ++GGE L Q +    L++  ++ G    ++T+
Sbjct: 105 GKRVSVDEVMNVIKKDIHFYQDSGGGVTISGGEALFQPNFTEALLKECHELGIHTCLDTS 164

Query: 120 G 120
           G
Sbjct: 165 G 165


>gi|319898144|ref|YP_004136341.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae
           F3031]
 gi|317433650|emb|CBY82035.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae
           F3031]
          Length = 246

 Score = 42.3 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G   +V++L   +     
Sbjct: 21  IRFILFMQGC-----------LMRCKYCHNRDT----WDLDGGREISVEELMKEVVSYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                G     +GGE +LQ +      +A    G    ++TNG
Sbjct: 66  FMNATGGGVTASGGEAILQAEFVRDWFRACKAEGINTCLDTNG 108


>gi|307086525|ref|ZP_07495638.1| putative radical SAM domain protein [Mycobacterium tuberculosis
           SUMu012]
 gi|308364116|gb|EFP52967.1| putative radical SAM domain protein [Mycobacterium tuberculosis
           SUMu012]
          Length = 571

 Score = 42.3 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 18/112 (16%)

Query: 27  CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQL 70
            RF      GC    G   D     C             C   F        G       
Sbjct: 77  LRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYAITAAQ 136

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRG-FEIAVETNG 120
            + + +  +  E E    + +GGEP +    +  + A   R    + + TNG
Sbjct: 137 CERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVIINTNG 188


>gi|303327027|ref|ZP_07357469.1| putative pyruvate formate-lyase 1 activating enzyme [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863015|gb|EFL85947.1| putative pyruvate formate-lyase 1 activating enzyme [Desulfovibrio
           sp. 3_1_syn3]
          Length = 322

 Score = 42.3 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
           G + NVD +   +E+      + G    L+GGEPLLQ D  + L++    R  + AVET 
Sbjct: 123 GKKRNVDDVLSSVEQDAAFYSRSGGGMTLSGGEPLLQADFALALLRQARVRRLKTAVETC 182

Query: 120 GTIEP 124
           G +  
Sbjct: 183 GMVPA 187


>gi|255022186|ref|ZP_05294188.1| Radical SAM domain Fe-S oxidoreductase [Acidithiobacillus caldus
           ATCC 51756]
 gi|254968368|gb|EET25928.1| Radical SAM domain Fe-S oxidoreductase [Acidithiobacillus caldus
           ATCC 51756]
          Length = 367

 Score = 42.3 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 20/117 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C            T   R +VD+     EE             + 
Sbjct: 38  CNLAC--------AGCG----KIDYPDETLDKRLSVDECIGAAEECG------APIVSIA 79

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
           GGEPL+  ++P ++Q L +R   + + TN  +   + +D    SP     + + G +
Sbjct: 80  GGEPLIHKEMPAIVQGLIQRKRFVYLCTN-ALLLKKRMDDYKPSPYLTFSVHLDGNE 135


>gi|218884694|ref|YP_002429076.1| Predicted Fe-S oxidoreductase [Desulfurococcus kamchatkensis 1221n]
 gi|218766310|gb|ACL11709.1| Predicted Fe-S oxidoreductase [Desulfurococcus kamchatkensis 1221n]
          Length = 572

 Score = 42.3 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           L +    +R +  C +C   F   + +       +DQ+ +++      G        LTG
Sbjct: 124 LVNMVVTNRCNLSCWYC---FFYSEASGYVYEPRLDQIREMVRSIKKQGVTVA--IQLTG 178

Query: 93  GEPLL-QVDVPLIQALNKRGFE-IAVETNG 120
           GEPLL +  V +++ L + G   I + TNG
Sbjct: 179 GEPLLREDLVDIVKLLKEEGVRHIQLNTNG 208


>gi|163858381|ref|YP_001632679.1| heme biosynthesis protein [Bordetella petrii DSM 12804]
 gi|163262109|emb|CAP44411.1| heme biosynthesis protein [Bordetella petrii]
          Length = 396

 Score = 42.3 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 8/101 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            +       R +  C+ C               N ++   +I++    G    R  +L+G
Sbjct: 31  PVVIWNLLRRCNLTCKHC--YATSADSPFRNELNTEEALRVIDDLHDAG---VRVLILSG 85

Query: 93  GEPLLQVDVPLIQALNKR--GFEIAVETNGTIEPPQGIDWI 131
           GEPLL+ D+    A + R  GF +A+ +NGT+     I+ I
Sbjct: 86  GEPLLRPDL-FQLAGHARVKGFFVALSSNGTLIDAHNIEQI 125


>gi|167578417|ref|ZP_02371291.1| radical SAM domain protein protein [Burkholderia thailandensis
           TXDOH]
          Length = 429

 Score = 42.3 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 24/116 (20%)

Query: 26  FCRF---SGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           F R      CNL            C + D+  +V  +G      +VD+ + LI+E    G
Sbjct: 96  FMRLHLTQRCNLTC--------VHC-YADSSPYVTSEGE----ISVDRWSRLIDEFADAG 142

Query: 82  EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI--CVS 134
            +     + TGGE L+      LI+  ++R  ++ + +NG +   + +D I  CV 
Sbjct: 143 GER---VLFTGGEALIYKGCDLLIRKAHERALDVTLFSNG-LLIDRYLDLIRACVD 194


>gi|262396452|ref|YP_003288305.1| pyruvate formate-lyase activating enzyme [Vibrio sp. Ex25]
 gi|262340046|gb|ACY53840.1| pyruvate formate-lyase activating enzyme [Vibrio sp. Ex25]
          Length = 309

 Score = 42.3 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           G     D L +++       ++       +GGEPL+Q D+   L Q L+      A+E+
Sbjct: 110 GEAAKSDDLFEVLMRDKPFYDQSQGGVTFSGGEPLMQADLVAELAQRLHDNQVSTAIES 168


>gi|148642598|ref|YP_001273111.1| pyruvate formate-lyase activating enzyme, PflA
          [Methanobrevibacter smithii ATCC 35061]
 gi|148551615|gb|ABQ86743.1| pyruvate formate-lyase activating enzyme, PflA
          [Methanobrevibacter smithii ATCC 35061]
          Length = 104

 Score = 42.3 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 11/68 (16%)

Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
          GC L           +C +C   F      +  +Y++D+L + ++   +         V 
Sbjct: 29 GCPL-----------RCAYCFNPFTWDGSVEPKKYSIDELYEEVKLDNLYFLATEGDLVF 77

Query: 91 TGGEPLLQ 98
           GGEPLL 
Sbjct: 78 GGGEPLLY 85


>gi|58696646|ref|ZP_00372200.1| glycosyl transferase, group 1 family protein [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225630352|ref|YP_002727143.1| glycosyl transferase, group 1 family protein / moaA/nifB/pqqE
           family protein [Wolbachia sp. wRi]
 gi|225630746|ref|YP_002727537.1| glycosyl transferase, group 1 / radical SAM family protein
           [Wolbachia sp. wRi]
 gi|58537170|gb|EAL60272.1| glycosyl transferase, group 1 family protein [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225592333|gb|ACN95352.1| glycosyl transferase, group 1 family protein / moaA/nifB/pqqE
           family protein [Wolbachia sp. wRi]
 gi|225592727|gb|ACN95746.1| glycosyl transferase, group 1 / radical SAM family protein
           [Wolbachia sp. wRi]
          Length = 778

 Score = 42.3 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 26/140 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR------YNVDQLADLIEEQWITGEKEG 85
           CN      +         C + +  ++  K  +       +++ +  +I+E    G    
Sbjct: 453 CNFACVMCE---------CFSPYSKVKEEKKAKGIKPKIMSIETIRKVIKEAD--GTPLR 501

Query: 86  RYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144
                T GEPL+      +I   ++ G ++ + TNG+        W         +L + 
Sbjct: 502 EIIPSTMGEPLMYKSFDEIINLCHEFGLKLNLTTNGSFPIKGARKW--------AELLVP 553

Query: 145 GGQELKLVFPQVNVSPENYI 164
              ++K+ +          I
Sbjct: 554 ILSDVKISWNGATKETHERI 573


>gi|332041871|gb|EGI78220.1| molybdenum cofactor biosynthesis protein A [Hylemonella gracilis
           ATCC 19624]
          Length = 367

 Score = 42.3 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQG----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
           DR + +C +C    V  +       G     +++A L       G ++ R   LTGGEPL
Sbjct: 37  DRCNFRCSYCMPKEVFTKDYPYLPHGDLLTFEEIARLARAFVSLGVRKIR---LTGGEPL 93

Query: 97  LQVDVP-LIQALNK 109
           L+ ++  LI+ L  
Sbjct: 94  LRKNIEALIEQLAD 107


>gi|298369763|ref|ZP_06981080.1| molybdenum cofactor biosynthesis protein A [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298282320|gb|EFI23808.1| molybdenum cofactor biosynthesis protein A [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 324

 Score = 42.3 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 37/177 (20%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKG-----GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
           DR   +C +C       +G KG         +++ A +       G K  R   LTGGEP
Sbjct: 19  DRCDLRCTYC-----LPKGFKGFAVPKDWLTIEETARVAAAFARLGTKRFR---LTGGEP 70

Query: 96  LLQV-DVPLIQAL-NKRGFE-IAVETNGT--------------IEPPQGIDWICVSPKAG 138
           LL+     L   +  + G E I++ TNGT                    +D    S +  
Sbjct: 71  LLRKGLTELAAEISRQPGVEDISLTTNGTRLGQQARALRAAGVRRLNISLD----SLRRD 126

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
           C   I G   L  V   +  + E   GF+  + ++ P+ G   + + +  +++C Q+
Sbjct: 127 CVASITGSDCLPQVLEGITAAKE--AGFERIKINMVPLKG-INDTDLDDMVAFCIQH 180


>gi|215424974|ref|ZP_03422893.1| putative transferase [Mycobacterium tuberculosis T92]
 gi|289748248|ref|ZP_06507626.1| hypothetical transferase [Mycobacterium tuberculosis T92]
 gi|289688835|gb|EFD56264.1| hypothetical transferase [Mycobacterium tuberculosis T92]
          Length = 543

 Score = 42.3 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 18/112 (16%)

Query: 27  CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQL 70
            RF      GC    G   D     C             C   F        G       
Sbjct: 77  LRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYAITAAQ 136

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRG-FEIAVETNG 120
            + + +  +  E E    + +GGEP +    +  + A   R    + + TNG
Sbjct: 137 CERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVIINTNG 188


>gi|188996403|ref|YP_001930654.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931470|gb|ACD66100.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 375

 Score = 42.3 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 18/90 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       + S      D+               D++ + +      G    ++ + +
Sbjct: 33  CNLSCLHCYSKASV-----DSKDA---------LTTDEIVNTLPSLINAG---IKFIIFS 75

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           GGEPLL+ D+  + Q   K+G    + TNG
Sbjct: 76  GGEPLLRKDIFEIAQECKKQGIITYLSTNG 105


>gi|269967125|ref|ZP_06181192.1| putative pyruvate formate-lyase 3 activating enzyme [Vibrio
           alginolyticus 40B]
 gi|269828262|gb|EEZ82529.1| putative pyruvate formate-lyase 3 activating enzyme [Vibrio
           alginolyticus 40B]
          Length = 313

 Score = 42.3 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           G     D L D + +     ++       +GGEPL+Q D+   L Q L+      A+E+ 
Sbjct: 114 GEEAKSDMLFDTLMKDKPFYDQSQGGVTFSGGEPLMQADLVAELAQRLHDNQVSTAIESC 173

Query: 120 GTIEP 124
             +  
Sbjct: 174 MNVPW 178


>gi|42520465|ref|NP_966380.1| glycosyl transferase, group 1 family protein / moaA/nifB/pqqE
           family protein [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410204|gb|AAS14314.1| glycosyl transferase, group 1 family protein / moaA/nifB/pqqE
           family protein [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 778

 Score = 42.3 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 26/140 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR------YNVDQLADLIEEQWITGEKEG 85
           CN      +         C + +  ++  K  +       +++ +  +I+E    G    
Sbjct: 453 CNFACVMCE---------CFSPYSKVKEEKKAKGIKPKIMSIETIRKVIKEAD--GTPLR 501

Query: 86  RYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144
                T GEPL+      +I   ++ G ++ + TNG+        W         +L + 
Sbjct: 502 EIIPSTMGEPLMYKSFDEIINLCHEFGLKLNLTTNGSFPIKGARKW--------AELLVP 553

Query: 145 GGQELKLVFPQVNVSPENYI 164
              ++K+ +          I
Sbjct: 554 ILSDVKISWNGATKETHERI 573


>gi|134291935|ref|YP_001115704.1| pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia
           vietnamiensis G4]
 gi|134135124|gb|ABO59449.1| coenzyme PQQ biosynthesis protein E [Burkholderia vietnamiensis G4]
          Length = 384

 Score = 42.3 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
            LW   E   R    C FC   +  +   T G   + D    +I +    G  +      
Sbjct: 23  PLWLLAELTYRCPLHCAFC---YNPVDFATHGAELDTDAWRTVISDARALGAAQ---IGF 76

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           +GGEPL + D+  L+      GF   + T+G
Sbjct: 77  SGGEPLQRDDLEELVGHARSLGFYTNLITSG 107


>gi|228994177|ref|ZP_04154077.1| Radical SAM domain protein [Bacillus pseudomycoides DSM 12442]
 gi|228765629|gb|EEM14283.1| Radical SAM domain protein [Bacillus pseudomycoides DSM 12442]
          Length = 259

 Score = 42.3 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           ++  +  +++     +    +     GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 1   MEDFSKRLDQIKPHTDYIYLHVK---GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 54


>gi|219852935|ref|YP_002467367.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
 gi|219547194|gb|ACL17644.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
          Length = 512

 Score = 42.3 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           L +    +R +  C FC   F   +        + D++  +++               +G
Sbjct: 92  LANIDVTNRCNLNCDFC---FANARACGFIYEPDFDEIVGMMKNLRNERPVPPPAVQFSG 148

Query: 93  GEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
           GEP ++ D+P LI+     GF ++ + +NG
Sbjct: 149 GEPTMRDDLPDLIREAKALGFSQVQIASNG 178


>gi|119719760|ref|YP_920255.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermofilum pendens Hrk 5]
 gi|119524880|gb|ABL78252.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermofilum pendens Hrk 5]
          Length = 265

 Score = 42.3 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 15/105 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPL 103
           +C +C  +    +G +  R  VD++   +       +       +TGGEP LQ      L
Sbjct: 38  RCPWC-ANSRLARGLEVRRATVDEIVSAVSRARAFVDYFH----VTGGEPTLQYRRLEKL 92

Query: 104 IQALNKR-GFEIAVETNGTIE-----PPQGIDW--ICVSPKAGCD 140
            + +    G  ++++TN +I        + +D   + V  KA  D
Sbjct: 93  FERVKTEVGLPLSLDTNASIPSALEHLLRSVDVEHVAVDVKAPLD 137


>gi|327398608|ref|YP_004339477.1| molybdenum cofactor biosynthesis protein A [Hippea maritima DSM
           10411]
 gi|327181237|gb|AEA33418.1| molybdenum cofactor biosynthesis protein A [Hippea maritima DSM
           10411]
          Length = 321

 Score = 42.3 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 15/113 (13%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLT 91
           N       DR + +C +C    +   G      + +    ++      + E       LT
Sbjct: 13  NYLRISVTDRCNFRCIYC----MPKDGIGWKPMSEILTYEEISLFVKASAELGINKIKLT 68

Query: 92  GGEPLLQVDVP-LIQALNKR-GF-EIAVETNGTIEPP-------QGIDWICVS 134
           GGEPL++  +  L+  L    G  EI++ TNG++           G+D I +S
Sbjct: 69  GGEPLVRKGIDRLVDMLKNIDGIDEISLTTNGSLLKKYAKGLKAAGLDRITIS 121


>gi|310821937|ref|YP_003954295.1| molybdenum cofactor biosynthesis protein moaa [Stigmatella
           aurantiaca DW4/3-1]
 gi|309395009|gb|ADO72468.1| Molybdenum cofactor biosynthesis protein MoaA [Stigmatella
           aurantiaca DW4/3-1]
          Length = 335

 Score = 42.3 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 17/105 (16%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           GR   + R S          DR + +C +C         + GG+ ++    +      + 
Sbjct: 20  GRRMTYLRLS--------VTDRCNFRCTYC------SPASWGGKKDLLSALEFERIVSVF 65

Query: 81  GEKEGRYCVLTGGEPLLQVD-VPLIQALNKR-GFE-IAVETNGTI 122
                +   LTGGEPL++ D + + Q L+   G E +A+ TN + 
Sbjct: 66  ASMGIQRVRLTGGEPLIRPDILEIAQRLSALPGVERVAITTNASH 110


>gi|300774552|ref|ZP_07084415.1| MoaA/NifB/PqqE family protein [Chryseobacterium gleum ATCC 35910]
 gi|300506367|gb|EFK37502.1| MoaA/NifB/PqqE family protein [Chryseobacterium gleum ATCC 35910]
          Length = 467

 Score = 42.3 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 12/82 (14%)

Query: 31  GCNLWSGREQDRLSAQCR-----------FCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G   D     C             C T +       G   +++++  + +   +
Sbjct: 80  GCPYDCGLCVDHEQHSCLSIVEVTDRCNLTCPTCYAMSSPHYGSHRSLEEIEAMFD-VIV 138

Query: 80  TGEKEGRYCVLTGGEPLLQVDV 101
             E E     ++GGEP +  + 
Sbjct: 139 KNEGEPDVVQISGGEPTIHPEF 160


>gi|219559812|ref|ZP_03538888.1| putative transferase [Mycobacterium tuberculosis T17]
          Length = 535

 Score = 42.3 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 18/112 (16%)

Query: 27  CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQL 70
            RF      GC    G   D     C             C   F        G       
Sbjct: 77  LRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYAITAAQ 136

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRG-FEIAVETNG 120
            + + +  +  E E    + +GGEP +    +  + A   R    + + TNG
Sbjct: 137 CERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVIINTNG 188


>gi|187735362|ref|YP_001877474.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187425414|gb|ACD04693.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 250

 Score = 42.3 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 27/129 (20%)

Query: 22  RVAVF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
              +F  R  GCNL+     +    +         G     G R +          +   
Sbjct: 22  VACIFWLR--GCNLFCQYCYNVSLVR---------GTDSPAGDRTDYLDFL-----RDRV 65

Query: 81  GEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE------PPQGI-DWIC 132
           G  +G   VL+GGE  L  D+ P+ + + + GF + ++TNGT          +G+ D+I 
Sbjct: 66  GFLDG--VVLSGGECTLCPDLIPICRNIRQLGFAVKIDTNGTRPGVVKTLVEEGLCDYIA 123

Query: 133 VSPKAGCDL 141
           +  KA   L
Sbjct: 124 LDYKAPEKL 132


>gi|115374433|ref|ZP_01461715.1| radical SAM:Molybdenum cofactor synthesis C-terminal [Stigmatella
           aurantiaca DW4/3-1]
 gi|115368525|gb|EAU67478.1| radical SAM:Molybdenum cofactor synthesis C-terminal [Stigmatella
           aurantiaca DW4/3-1]
          Length = 362

 Score = 42.3 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 17/105 (16%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           GR   + R S          DR + +C +C         + GG+ ++    +      + 
Sbjct: 24  GRRMTYLRLS--------VTDRCNFRCTYC------SPASWGGKKDLLSALEFERIVSVF 69

Query: 81  GEKEGRYCVLTGGEPLLQVD-VPLIQALNKR-GFE-IAVETNGTI 122
                +   LTGGEPL++ D + + Q L+   G E +A+ TN + 
Sbjct: 70  ASMGIQRVRLTGGEPLIRPDILEIAQRLSALPGVERVAITTNASH 114


>gi|123441007|ref|YP_001004996.1| putative pyruvate formate-lyase 3 activating enzyme [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122087968|emb|CAL10756.1| putative pyruvate formate-lyase 3 activating enzyme [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 299

 Score = 42.3 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           G   ++D   + +        + G    L+GGEP +Q +V   L+Q  +++G   AVE+
Sbjct: 101 GSPIDIDATMETLLRDLPFYRRSGGGVTLSGGEPFMQPEVAAELLQRCHQQGIHTAVES 159


>gi|15897297|ref|NP_341902.1| molybdenum cofactor biosynthesis protein A (moaA) [Sulfolobus
           solfataricus P2]
 gi|284174549|ref|ZP_06388518.1| molybdenum cofactor biosynthesis protein A (moaA) [Sulfolobus
           solfataricus 98/2]
 gi|24212003|sp|Q980F0|MOAA_SULSO RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|13813506|gb|AAK40692.1| Molybdenum cofactor biosynthesis protein A (moaA) [Sulfolobus
           solfataricus P2]
 gi|261601970|gb|ACX91573.1| molybdenum cofactor biosynthesis protein A [Sulfolobus solfataricus
           98/2]
          Length = 308

 Score = 42.3 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 8/77 (10%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104
           +C FC      ++G +G  Y +    D++    +  +       LTGGEP L+ D+  ++
Sbjct: 23  ECFFC-----HMEGEEGDNY-LLSKEDILLVAKVARKFGINSVKLTGGEPTLRRDLVEIV 76

Query: 105 QALNKRGFE-IAVETNG 120
           + L + G+E +++ TNG
Sbjct: 77  RGLKQLGYEDVSMTTNG 93


>gi|325849298|ref|ZP_08170715.1| radical SAM domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480160|gb|EGC83229.1| radical SAM domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 425

 Score = 42.3 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI-------EPPQGIDWI 131
                  +  VLTGGEPL   ++  I  L    +++ + TNG +       +  + ID+I
Sbjct: 110 WLKSINFKRLVLTGGEPLKHPEILSILKLKDSRYKMILSTNGLLINKNNINDIAKNIDYI 169

Query: 132 CVS 134
            +S
Sbjct: 170 IIS 172


>gi|320115265|ref|YP_004185424.1| Radical SAM domain-containing protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|319928356|gb|ADV79041.1| Radical SAM domain protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 327

 Score = 42.3 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 11/76 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPL 103
            C FC     G Q     R++  QL   ++           +  +TGGEPL+  +   PL
Sbjct: 15  NCNFC--QVGGPQRDINKRFDYKQLVRFLK-------GNNYHIQITGGEPLIRKKELAPL 65

Query: 104 IQALNKRGFEIAVETN 119
           IQ L + G  I + TN
Sbjct: 66  IQDLKEDGHMITLLTN 81


>gi|312885478|ref|ZP_07745117.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311302058|gb|EFQ79088.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 465

 Score = 42.3 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 14/103 (13%)

Query: 31  GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G  QD     C             C T +     + G    + ++  +++   +
Sbjct: 80  GCPYDCGLCQDHEQHSCLTVIEVTDRCNLSCPTCYAMSSPSYGRHRTLHEIEQMLD-TIV 138

Query: 80  TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETNG 120
             E +     ++GGEP +      ++    ++    + + TNG
Sbjct: 139 ANEGKPDVVQISGGEPTVHPQFFEIMDIAKRKPIKHLMLNTNG 181


>gi|261822951|ref|YP_003261057.1| glycyl-radical enzyme activating protein family [Pectobacterium
           wasabiae WPP163]
 gi|261606964|gb|ACX89450.1| glycyl-radical enzyme activating protein family [Pectobacterium
           wasabiae WPP163]
          Length = 316

 Score = 42.3 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
           G    V +L  +I + +   +  G    L+GGE  LQ D  V L+QA  ++    AVET 
Sbjct: 114 GQDMTVAELMAVIMQDYSFYQSSGGGVTLSGGEVSLQTDFAVALLQACKQKMINTAVETQ 173

Query: 120 GT 121
           GT
Sbjct: 174 GT 175


>gi|261341169|ref|ZP_05969027.1| putative pyruvate formate-lyase 1 activating enzyme [Enterobacter
           cancerogenus ATCC 35316]
 gi|288316464|gb|EFC55402.1| putative pyruvate formate-lyase 1 activating enzyme [Enterobacter
           cancerogenus ATCC 35316]
          Length = 319

 Score = 42.3 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 3/83 (3%)

Query: 41  DRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR    C  C+           G   +V+ + D +    I   + G    L+GGE   Q 
Sbjct: 95  DRSCTGCGLCEERCPAAALNVVGEPLSVETVFDRVMADEIWFRQSGGGVTLSGGEVATQP 154

Query: 100 DV--PLIQALNKRGFEIAVETNG 120
           D    LI  L        +ET G
Sbjct: 155 DFAQALIARLKAEDIHTTIETAG 177


>gi|146337422|ref|YP_001202470.1| putative Fe-S oxidoreductases [Bradyrhizobium sp. ORS278]
 gi|146190228|emb|CAL74220.1| conserved hypothetical protein; putative predicted Fe-S
           oxidoreductases [Bradyrhizobium sp. ORS278]
          Length = 470

 Score = 42.3 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 60/181 (33%), Gaps = 22/181 (12%)

Query: 31  GCNLWSGREQDRLSAQCR-----------FCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G   D     C             C   F      +   ++     + + +  +
Sbjct: 85  GCPYDCGLCPDHEQHSCLALIEITDHCNLTCPVCFA-ESSPQRAHFSPLATVERMLDALV 143

Query: 80  TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKA 137
             E E     ++GGEP L  +   ++ A+  R    + + TNG +   +  D++      
Sbjct: 144 QSEGEPDLVQISGGEPTLHPEFFDILAAVRARPIRHVMINTNG-LRIAREPDFV------ 196

Query: 138 GCDLKIKGGQELKLVFPQVNVS-PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196
               + K G E+ L F  ++ +   N  G D  R   Q ++       +   ++   +  
Sbjct: 197 SRLAETKRGLEVYLQFDSLSRAGLTNIRGADLRRIRQQALENLERAGISTTLVATIKRGV 256

Query: 197 K 197
            
Sbjct: 257 N 257


>gi|167036843|ref|YP_001664421.1| radical SAM domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|166855677|gb|ABY94085.1| Radical SAM domain protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
          Length = 338

 Score = 42.3 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 11/76 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPL 103
            C FC     G Q     R++  QL   ++           +  +TGGEPL+  +   PL
Sbjct: 26  NCNFC--QVGGPQRDINKRFDYKQLVRFLK-------GNNYHIQITGGEPLIRKKELAPL 76

Query: 104 IQALNKRGFEIAVETN 119
           IQ L + G  I + TN
Sbjct: 77  IQDLKEDGHMITLLTN 92


>gi|114331563|ref|YP_747785.1| radical SAM domain-containing protein [Nitrosomonas eutropha C91]
 gi|114308577|gb|ABI59820.1| Radical SAM domain protein [Nitrosomonas eutropha C91]
          Length = 387

 Score = 42.3 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C          + T   R +VD+    ++E             + 
Sbjct: 38  CNLAC--------AGCG----KIDYPEETLRRRLSVDECLHAVDECG------APVVSIA 79

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+  ++P ++Q + +R   + + TN  +     +D    SP     + + G +E
Sbjct: 80  GGEPLIHKEMPQIVQGIIQRKKFVYLCTN-ALLLDARMDDYQPSPYLTFSIHLDGNRE 136


>gi|325968647|ref|YP_004244839.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28]
 gi|323707850|gb|ADY01337.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 503

 Score = 42.3 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 18/91 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   +            +D+   +++E    G        L+
Sbjct: 146 CNL-----------RCIHC---YQNAGRPLPNELTLDEKLRVVKELDEAGVPA---IALS 188

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
           GGEP +  D  P++  +  RGF  A+ TNGT
Sbjct: 189 GGEPTVHRDFWPVLAEIGGRGFYPAIATNGT 219


>gi|221194628|ref|ZP_03567685.1| pyruvate formate-lyase 1-activating enzyme [Atopobium rimae ATCC
           49626]
 gi|221185532|gb|EEE17922.1| pyruvate formate-lyase 1-activating enzyme [Atopobium rimae ATCC
           49626]
          Length = 273

 Score = 42.3 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 39/106 (36%), Gaps = 27/106 (25%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
           E F T+ G G    R+ VF    GC +           +C +C   DT     +   G  
Sbjct: 31  ETFGTVDGPGT---RLVVFM--QGCPM-----------RCAYCHNPDT----WKFGIGHE 70

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110
            +V  +  L +       K G     TGGEPL Q     + AL + 
Sbjct: 71  KSVADVLALYDRNRPFYRKGG--ITATGGEPLAQP--AFVGALFEA 112


>gi|110667956|ref|YP_657767.1| molybdopterin-based tungsten cofactor biosynthesis protein
           [Haloquadratum walsbyi DSM 16790]
 gi|109625703|emb|CAJ52135.1| molybdopterin-based tungsten cofactor biosynthesis protein
           [Haloquadratum walsbyi DSM 16790]
          Length = 572

 Score = 42.3 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 58/165 (35%), Gaps = 39/165 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC   F    G  G   + + +  L+  Q I      R    +
Sbjct: 183 CNL-----------SCSFC---FASS-GPGGTHRSFETVEKLL--QTIVKSGGPRPIQFS 225

Query: 92  GGEPLLQVDVP-LIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
           GGEP ++ D+P +++   + GFE I + TNG IE  +         K G   ++      
Sbjct: 226 GGEPTIRDDLPEIVERAGQMGFEHIQINTNG-IELVE---------KKGYASRLSDAGVT 275

Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
            +      +  E Y            + G  L +    A+  C +
Sbjct: 276 AIYLQFDGLQSETYEA----------IRGVDLADLKREAVKTCRE 310


>gi|313496741|gb|ADR58107.1| Coenzyme PQQ synthesis protein E [Pseudomonas putida BIRD-1]
          Length = 386

 Score = 42.3 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C          +G   + +Q   ++ E    G  +      +
Sbjct: 20  PLWLLAELTYRCPLQCPYCSNPLDF--AAQGQELSTEQWFKVMAEAREMGAAQ---IGFS 74

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    + G+   + T+G
Sbjct: 75  GGEPLVRQDLAELIGEARRLGYYTNLITSG 104


>gi|295096397|emb|CBK85487.1| pyruvate formate-lyase 1-activating enzyme [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 246

 Score = 42.3 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A +K G    ++TNG
Sbjct: 72  GGVTASGGEAILQAEFVRDWFRACHKEGIHTCLDTNG 108


>gi|296103095|ref|YP_003613241.1| pyruvate formate lyase-activating enzyme 1 [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057554|gb|ADF62292.1| pyruvate formate lyase-activating enzyme 1 [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 246

 Score = 42.3 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A +K G    ++TNG
Sbjct: 72  GGVTASGGEAILQAEFVRDWFRACHKEGIHTCLDTNG 108


>gi|228909375|ref|ZP_04073200.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           IBL 200]
 gi|228850152|gb|EEM94981.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           IBL 200]
          Length = 307

 Score = 42.3 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 13/85 (15%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+ D+P LI+ L+K  G E I +
Sbjct: 14  SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRDLPQLIERLHKIDGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVS 134
            TNG++      D        + VS
Sbjct: 71  TTNGSLLKKFAPDLYKAGLSRVTVS 95


>gi|170761459|ref|YP_001786460.1| radical SAM domain-containing protein [Clostridium botulinum A3
           str. Loch Maree]
 gi|169408448|gb|ACA56859.1| radical SAM domain protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 297

 Score = 42.3 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 20/92 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC          K    +++    ++++     +    +    
Sbjct: 20  CNL-----------ACDFC-----PETRRKPQFMSIEFFDKILDQIKPYTDYIYFHVK-- 61

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            GEPLL  D+   +    K+GF++ + TNGT+
Sbjct: 62  -GEPLLHPDIDKFLDLSYKKGFKVNITTNGTL 92


>gi|168184784|ref|ZP_02619448.1| radical SAM domain protein [Clostridium botulinum Bf]
 gi|229587302|ref|YP_002860340.1| putative radical SAM domain protein [Clostridium botulinum Ba4 str.
           657]
 gi|182672199|gb|EDT84160.1| radical SAM domain protein [Clostridium botulinum Bf]
 gi|229260272|gb|ACQ51309.1| putative radical SAM domain protein [Clostridium botulinum Ba4 str.
           657]
          Length = 353

 Score = 42.3 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 20/91 (21%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL            C   D     +          D++     + +  G K+    V+
Sbjct: 17  GCNLNCIHC-------CNVSDEKRTFLD--------ADEILKFHSKLYKLGIKDS---VV 58

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           TGGEP L  D   +I+ L K G ++ V +NG
Sbjct: 59  TGGEPTLHKDFEKIIEGLCKVG-KVVVTSNG 88


>gi|315646290|ref|ZP_07899410.1| pyruvate formate-lyase activating enzyme [Paenibacillus vortex
           V453]
 gi|315278489|gb|EFU41805.1| pyruvate formate-lyase activating enzyme [Paenibacillus vortex
           V453]
          Length = 242

 Score = 42.3 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 51/154 (33%), Gaps = 44/154 (28%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F T+ G G          RF     GC             +C++C   DT        
Sbjct: 10  ETFGTVDGPG---------IRFVLFMQGC-----------LLKCQYCHNPDT----WGLH 45

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-----GFEIA 115
           +G    V+ +   IE         G    ++GGEP LQ   P +  L K           
Sbjct: 46  EGQEMTVEDVLAQIEPYLSYYRSSGGGLTVSGGEPTLQ--YPFVTELFKEVKRRWNLHTT 103

Query: 116 VETNGTIEPP------QGIDWICVSPKAGCDLKI 143
           +++NG  EP       +  D + +  K   D K 
Sbjct: 104 LDSNGYNEPEKISELLEHTDLVLLDLKHINDEKH 137


>gi|283784729|ref|YP_003364594.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter rodentium
           ICC168]
 gi|282948183|emb|CBG87750.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter rodentium
           ICC168]
          Length = 246

 Score = 42.3 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V++L   +          G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKEVVTYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 72  GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 108


>gi|254385929|ref|ZP_05001247.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194344792|gb|EDX25758.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 343

 Score = 42.3 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 38  CNLAC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  +++ L  +   + + TN  +   + I+    SP     + I G +E
Sbjct: 80  GGEPLMHPQIDEIVRQLVAKRKYVFLCTN-AMLLRKKIEKFTPSPYFAFAVHIDGLRE 136


>gi|111220890|ref|YP_711684.1| hypothetical protein FRAAL1435 [Frankia alni ACN14a]
 gi|111148422|emb|CAJ60093.1| conserved hypothetical protein; putative Radical SAM domain
           [Frankia alni ACN14a]
          Length = 334

 Score = 42.3 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C             R + +     ++E             + 
Sbjct: 38  CNL-----------SCTGCG-KIQHPASVLKQRMSPEDALAAVKECG------APVVAIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  ++  L KR   + + TNG +   + +     SP     L I G +E
Sbjct: 80  GGEPLMHPQIHEIVNELVKRKKFVILCTNG-LLLQKKLKNFTPSPYFTFVLHIDGLRE 136


>gi|91203835|emb|CAJ71488.1| similar to moaA/nifB/ppqE/nirJ protein family for cofactor
           bionsynthesis [Candidatus Kuenenia stuttgartiensis]
          Length = 340

 Score = 42.3 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 19/117 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C+ C   F      +    + D+  + +E    TG      C   
Sbjct: 64  CNL-----------RCKHC--YFYAHDYAEKPELSDDEWIEKLEGLKETG-FPFYQCSWI 109

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGID---WICVSPKAGCDLKIKG 145
           GGEPLL+ D  L++   K      + TNGT+E P   D   +I V  K      I+G
Sbjct: 110 GGEPLLRKD--LLERCMKYFRSNLIVTNGTLELPNWPDVNFYISVDGKKETHDAIRG 164


>gi|52424458|ref|YP_087595.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia
           succiniciproducens MBEL55E]
 gi|52306510|gb|AAU37010.1| PflA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 246

 Score = 42.3 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G   +V++L   +     
Sbjct: 21  IRFILFLQGC-----------LMRCKYCHNRDT----WDLHGGKEISVEELMKEVVTYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                G     +GGE +LQ +      +A +K G    ++TNG
Sbjct: 66  FMNASGGGVTASGGEAILQAEFVRDWFRACHKEGINTCLDTNG 108


>gi|78223014|ref|YP_384761.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78194269|gb|ABB32036.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 465

 Score = 42.3 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 36/104 (34%), Gaps = 15/104 (14%)

Query: 30  SGCNLWSGREQDRLSAQCRF-------CDTDFVGIQGTKGGRYNVDQLADLI----EEQW 78
            GC    G         C         C+          G + +VD   D I    E   
Sbjct: 75  QGCPFDCGLCSAHAQMPCSVLLEVTDRCNLQCAVCFADSGRKDSVDTSLDRITWLLERAM 134

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
                      L+GGEP L+ D+P ++ A  + GF  I + TNG
Sbjct: 135 AAAGPCNLQ--LSGGEPTLRDDLPEIVAAARRIGFSFIQLNTNG 176


>gi|205829861|sp|A9BMV6|RLMN_DELAS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 374

 Score = 41.9 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 60/192 (31%), Gaps = 39/192 (20%)

Query: 24  AVFC----RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI----- 74
           AVF     R  G        Q   +  CRFC T   G QG        + LA L      
Sbjct: 92  AVFIPEDDR--G--TLCVSSQAGCAVGCRFCST---GHQGFSRNLSTGEILAQLWYAEHS 144

Query: 75  --EEQWITGEKEGRYCVLTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTI 122
             +     GE+     V+ G GEPL Q    L+ AL       G+      + V T+G +
Sbjct: 145 LRKRLGTGGERVISNVVMMGMGEPL-QNYTALVPALRAMLDDHGYGLSRRRVTVSTSGVV 203

Query: 123 EPPQGIDWICVSPKAGCDLKIKG-GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
                +   C        + +     EL+     +N     +   D     L+     F 
Sbjct: 204 PMIDRLSQDCA---VAMAVSLHAPNDELRDPLVPLNRKYPIHELLDACERYLEFAPRDF- 259

Query: 182 EENTNLAISYCF 193
                +   YC 
Sbjct: 260 -----ITFEYCM 266


>gi|253698670|ref|YP_003019859.1| radical SAM protein [Geobacter sp. M21]
 gi|251773520|gb|ACT16101.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 358

 Score = 41.9 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 17/95 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              CNL            CR C ++    +G     ++ ++   L++E     +      
Sbjct: 15  TQRCNLKC--------VHCR-CSSELTSSEGD----FSTEEGKKLLKE---ISDFSKPVV 58

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           VL+GGEPL++ D+  L +     G  + + +NG++
Sbjct: 59  VLSGGEPLMRPDIFELAEYGTSLGLRMCMASNGSL 93


>gi|160900454|ref|YP_001566036.1| radical SAM protein [Delftia acidovorans SPH-1]
 gi|160366038|gb|ABX37651.1| radical SAM enzyme, Cfr family [Delftia acidovorans SPH-1]
          Length = 397

 Score = 41.9 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 60/192 (31%), Gaps = 39/192 (20%)

Query: 24  AVFC----RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI----- 74
           AVF     R  G        Q   +  CRFC T   G QG        + LA L      
Sbjct: 115 AVFIPEDDR--G--TLCVSSQAGCAVGCRFCST---GHQGFSRNLSTGEILAQLWYAEHS 167

Query: 75  --EEQWITGEKEGRYCVLTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTI 122
             +     GE+     V+ G GEPL Q    L+ AL       G+      + V T+G +
Sbjct: 168 LRKRLGTGGERVISNVVMMGMGEPL-QNYTALVPALRAMLDDHGYGLSRRRVTVSTSGVV 226

Query: 123 EPPQGIDWICVSPKAGCDLKIKG-GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
                +   C        + +     EL+     +N     +   D     L+     F 
Sbjct: 227 PMIDRLSQDCA---VAMAVSLHAPNDELRDPLVPLNRKYPIHELLDACERYLEFAPRDF- 282

Query: 182 EENTNLAISYCF 193
                +   YC 
Sbjct: 283 -----ITFEYCM 289


>gi|88602977|ref|YP_503155.1| radical SAM family protein [Methanospirillum hungatei JF-1]
 gi|88188439|gb|ABD41436.1| Radical SAM [Methanospirillum hungatei JF-1]
          Length = 222

 Score = 41.9 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 46/133 (34%), Gaps = 29/133 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF R  GC +           +C +C         T   R  V+++ +LI    +     
Sbjct: 2   VFFR--GCPV-----------KCWYC---HNQSILTGEDRRPVEEVKELIRSSALLISG- 44

Query: 85  GRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSP 135
               + +GGE  +Q      L +     G    + TNG            + ID I +  
Sbjct: 45  ---VIFSGGEATMQPPALFALARYSRSIGLSTGLHTNGVYPDVIRKLIDERLIDHIALDI 101

Query: 136 KAGCDLKIKGGQE 148
           KA  +L    G+E
Sbjct: 102 KAEWNLYTVRGKE 114


>gi|283477062|emb|CAY72955.1| Coenzyme PQQ synthesis protein E [Erwinia pyrifoliae DSM 12163]
          Length = 382

 Score = 41.9 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF   +          Q  D+ ++    G  +     
Sbjct: 11  PLWLLAELTYRCPLQCPYCSNPLDFAQQEKE----LTTAQWIDVFKQARAMGAVQ---IG 63

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +GGEPL++ D+P LI++    GF   + T+G
Sbjct: 64  FSGGEPLVRKDLPELIRSARDLGFYTNLITSG 95


>gi|317499337|ref|ZP_07957607.1| glycyl-radical enzyme activating protein family [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316893372|gb|EFV15584.1| glycyl-radical enzyme activating protein family [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 264

 Score = 41.9 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 24/106 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG---------TKGGRYNVDQLADLIE 75
           VF    GC L           +C++C T     +          T G    V+ +   + 
Sbjct: 33  VF--LKGCPL-----------RCKWCSTPESYQKKIQTTLDGTITYGQIMTVEDVMVEVR 79

Query: 76  EQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119
           +  +     G    L+GGE L Q +    +++     G   A+E++
Sbjct: 80  KDSLFYFHSGGGVTLSGGEILAQPEFAYYILRRSCYEGINTAIESS 125


>gi|310765258|gb|ADP10208.1| Coenzyme PQQ synthesis protein E [Erwinia sp. Ejp617]
          Length = 382

 Score = 41.9 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF   +          Q  D+ ++    G  +     
Sbjct: 11  PLWLLAELTYRCPLQCPYCSNPLDFAQQEKE----LTTAQWIDVFKQARAMGAVQ---IG 63

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +GGEPL++ D+P LI++    GF   + T+G
Sbjct: 64  FSGGEPLVRKDLPELIRSARDLGFYTNLITSG 95


>gi|256829065|ref|YP_003157793.1| Radical SAM domain protein [Desulfomicrobium baculatum DSM 4028]
 gi|256578241|gb|ACU89377.1| Radical SAM domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 244

 Score = 41.9 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
             R   R + +C FC          +       ++   + +Q I   K      +TGGEP
Sbjct: 9   CYRITRRCNWKCHFC---QAPPDAKELSTVEHLKILRRLAQQRILSLK------ITGGEP 59

Query: 96  LLQVDVP-LIQALNKRGFEIAVETNGTIEPPQ 126
           LL+ D+   I   +  GF I + +NG++  P 
Sbjct: 60  LLRNDLEAFIDESSGLGFNITLCSNGSMFRPS 91


>gi|313126022|ref|YP_004036292.1| GTP cyclohydrolase subunit moaa [Halogeometricum borinquense DSM
           11551]
 gi|312292387|gb|ADQ66847.1| GTP cyclohydrolase subunit MoaA [Halogeometricum borinquense DSM
           11551]
          Length = 319

 Score = 41.9 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 62/183 (33%), Gaps = 35/183 (19%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR +  C +C      DT   G         + D +   +E   +  E        TGGE
Sbjct: 19  DRCNFDCVYCHNEGLGDTR--GPMEPSDDEMSTDDVVRFLE---VVEEFGVEKVKFTGGE 73

Query: 95  PLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDW-------ICVS-----PKAGCDLK 142
           P+L+ D+  I        E ++ TNGT  P +  D        + VS     P+A  ++ 
Sbjct: 74  PMLRQDLAEIIRRTPESMESSLTTNGTFLPGRAEDLKEAGLSRVNVSQDALDPEAFAEIT 133

Query: 143 IKGGQELKLVFPQVNVSPE---NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199
             G      V   V  + +   + +  +   F                 + +  +NP  +
Sbjct: 134 KSGAY--DNVLEGVQAALDAGLDPVKLNMVVF-------EHTAGYVEEMVDHVAENPGLQ 184

Query: 200 LSV 202
           L +
Sbjct: 185 LQL 187


>gi|224823976|ref|ZP_03697084.1| Radical SAM domain protein [Lutiella nitroferrum 2002]
 gi|224603395|gb|EEG09570.1| Radical SAM domain protein [Lutiella nitroferrum 2002]
          Length = 476

 Score = 41.9 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 50/137 (36%), Gaps = 45/137 (32%)

Query: 30  SGCNLWSGREQDRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +GCNL            C +C     DT       + G R +V+     +E        E
Sbjct: 110 TGCNL-----------SCSYCYKEDLDTP------SAGRRMDVETAKASVEMLLQESPDE 152

Query: 85  GRY-CVLTGGEPLLQVDVPLIQ--------ALNKRGFEIA--VETNGTIEPPQGIDW--- 130
            RY  V  GGEPL   +  LI+           + G ++   + TN T+   + +D+   
Sbjct: 153 PRYTVVFFGGEPL--SNRKLIETMVDYCETRFAELGKQVEFVMTTNATLLTEEIVDYLNA 210

Query: 131 ----ICVS---PKAGCD 140
               + VS   PK   D
Sbjct: 211 HRFGLSVSIDGPKKIHD 227


>gi|89899184|ref|YP_521655.1| ribonucleoside-triphosphate reductase, anaerobic-like protein
           [Rhodoferax ferrireducens T118]
 gi|89343921|gb|ABD68124.1| Ribonucleoside-triphosphate reductase, anaerobic-like [Rhodoferax
           ferrireducens T118]
          Length = 238

 Score = 41.9 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 26/126 (20%)

Query: 21  GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G++A  VF    GC             +C +C    +  + T     +   +  L++ + 
Sbjct: 25  GKLAAVVFV--QGCP-----------WRCGYCHNPHLQPR-TGSSLVSWSAVLALLKRRV 70

Query: 79  ITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
              +      V +GGEP +    +  ++A+   GF + + + G          + +DW+ 
Sbjct: 71  GLIDA----VVFSGGEPTMDPGLLDAMRAVRSLGFGVGLHSAGMYPRRLAEVLELVDWVG 126

Query: 133 VSPKAG 138
           +  K+ 
Sbjct: 127 LDVKSS 132


>gi|255525977|ref|ZP_05392902.1| glycyl-radical enzyme activating protein family [Clostridium
           carboxidivorans P7]
 gi|255510317|gb|EET86632.1| glycyl-radical enzyme activating protein family [Clostridium
           carboxidivorans P7]
          Length = 301

 Score = 41.9 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI 122
           Y+ +++  +IE+Q I     G     +GGE  +QV     L   L     ++A+ET+G  
Sbjct: 106 YSSEEILKIIEKQKIFYRHSGGGVTFSGGEATMQVGILRELAYKLYDSAVDLAIETSGYF 165

Query: 123 EPPQGIDWI 131
           E  +  D +
Sbjct: 166 EFEEVKDIL 174


>gi|207092753|ref|ZP_03240540.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 293

 Score = 41.9 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 25/154 (16%)

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIA--VETN 119
               +D + + ++     G K+ R   +TGGEPLL+      I  L+    E+A  + TN
Sbjct: 13  ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDEFIAKLHAYNKEVALVLSTN 69

Query: 120 GTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
           G +      D        + V   S K+   LKI     LK     +  S +  +     
Sbjct: 70  GFLLKKMAKDLKNAGLSRVNVSLDSLKSDRILKISQKDALKNTLEGIEESLKVGLKLKLN 129

Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQ 203
                 +     +E   L + Y         S+Q
Sbjct: 130 TVV---IKSVNDDEILEL-LEYAKNR-----SIQ 154


>gi|197116415|ref|YP_002136842.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
 gi|197085775|gb|ACH37046.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
          Length = 358

 Score = 41.9 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 17/95 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              CNL            CR C ++    +G     ++ ++   L++E     +      
Sbjct: 15  TQRCNLKC--------VHCR-CSSELTSSEGD----FSTEEGKKLLKE---ISDFSKPVV 58

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           VL+GGEPL++ D+  L +     G  + + +NG++
Sbjct: 59  VLSGGEPLMRPDIFELAEYGTSLGLRMCMASNGSL 93


>gi|126179411|ref|YP_001047376.1| putative molybdenum cofactor biosynthesis protein A [Methanoculleus
           marisnigri JR1]
 gi|125862205|gb|ABN57394.1| GTP cyclohydrolase subunit MoaA [Methanoculleus marisnigri JR1]
          Length = 292

 Score = 41.9 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 21/92 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C       +     + +   +A+L+    +  +   R    T
Sbjct: 22  CNL-----------RCIYC---HAEGEVNPEEQMSAGDIAELM---RVGVQFGIRSIKFT 64

Query: 92  GGEPLLQVDVPLIQALNK--RGFEIAVETNGT 121
           GGEPLL+ D  L+  +     G E ++ TNGT
Sbjct: 65  GGEPLLRRD--LVDIIRSVPPGVESSLTTNGT 94


>gi|91773244|ref|YP_565936.1| radical SAM family Fe-S protein [Methanococcoides burtonii DSM
           6242]
 gi|91712259|gb|ABE52186.1| Fe-S protein, radical SAM family [Methanococcoides burtonii DSM
           6242]
          Length = 231

 Score = 41.9 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 25/97 (25%)

Query: 27  CR--FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
            R  F GCN+           +C +C               +V+++ DL +         
Sbjct: 13  IRIEFFGCNM-----------KCPYC-----VHIHQPFKEVSVEEVVDLAKNSLSKAVHL 56

Query: 85  GRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNG 120
           G      G EP LQ   +PLI+ALN+ G E+ +++NG
Sbjct: 57  G------GAEPTLQKELIPLIKALNEVGKEVLLKSNG 87


>gi|325523142|gb|EGD01540.1| pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia
           sp. TJI49]
          Length = 372

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
            LW   E   R    C FC   +  +     G   + D    +I +    G  +      
Sbjct: 11  PLWLLAELTYRCPLHCAFC---YNPVDFAKHGAELDTDAWRTVISDARALGAAQ---IGF 64

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           +GGEPL + D+  L++     GF   + T+G
Sbjct: 65  SGGEPLQRDDLETLVEHARGLGFYTNLITSG 95


>gi|317491449|ref|ZP_07949885.1| pyruvate formate-lyase 1-activating enzyme [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316920996|gb|EFV42319.1| pyruvate formate-lyase 1-activating enzyme [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 246

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 54/177 (30%), Gaps = 36/177 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGTEITVEDLMKDVVTYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKAGCDL 141
                +GGE +LQ +      +A  + G    ++TNG        ID  + V+     DL
Sbjct: 72  GGVTASGGEAILQAEFVRDWFRACKEEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDL 131

Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
           K            Q  V   N+   +F R+          + N    I Y    P W
Sbjct: 132 KQMNDD-----IHQNLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV-PGW 174


>gi|293396829|ref|ZP_06641103.1| pyruvate formate-lyase 1-activating enzyme [Serratia odorifera DSM
           4582]
 gi|291420300|gb|EFE93555.1| pyruvate formate-lyase 1-activating enzyme [Serratia odorifera DSM
           4582]
          Length = 246

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G    V++L           
Sbjct: 25  VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKDTVSYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
              G     +GGE +LQ +      +A ++ G    ++TNG
Sbjct: 68  NASGGGVTASGGEAILQAEFVRDWFRACHQEGINTCLDTNG 108


>gi|289548181|ref|YP_003473169.1| molybdenum cofactor biosynthesis protein A [Thermocrinis albus DSM
           14484]
 gi|289181798|gb|ADC89042.1| molybdenum cofactor biosynthesis protein A [Thermocrinis albus DSM
           14484]
          Length = 332

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 16/105 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR + +C FC        G +   +  +++    ++     ++     R   +TGGEPLL
Sbjct: 19  DRCNFRCSFC-----MPDGHQYEFFPKEEILTFEEITRVVKVSKSLGVRKVRITGGEPLL 73

Query: 98  QVDVP-LIQALNKRGFEIAVETNG-------TIEPPQGIDWICVS 134
           + D+  LI  ++    ++++ TNG       +     G+  + VS
Sbjct: 74  RRDIEKLISMISPFVEDVSLTTNGFLLKEKASSLKEAGLKRVTVS 118


>gi|228916198|ref|ZP_04079768.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228843396|gb|EEM88474.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 338

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  +  +  +     + D++  +       G ++ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGPD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ LNK  G E I + TNG++      D        + VS
Sbjct: 75  GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126


>gi|196038233|ref|ZP_03105542.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           NVH0597-99]
 gi|196030641|gb|EDX69239.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           NVH0597-99]
          Length = 338

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  +  +  +     + D++  +       G ++ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGPD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ LNK  G E I + TNG++      D        + VS
Sbjct: 75  GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126


>gi|196034109|ref|ZP_03101519.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus W]
 gi|195993183|gb|EDX57141.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus W]
          Length = 338

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  +  +  +     + D++  +       G ++ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGPD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ LNK  G E I + TNG++      D        + VS
Sbjct: 75  GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126


>gi|218904693|ref|YP_002452527.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH820]
 gi|228928618|ref|ZP_04091654.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|218538124|gb|ACK90522.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH820]
 gi|228830937|gb|EEM76538.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 338

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  +  +  +     + D++  +       G ++ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGPD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ LNK  G E I + TNG++      D        + VS
Sbjct: 75  GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126


>gi|124027153|ref|YP_001012473.1| Fe-S osidoreductase [Hyperthermus butylicus DSM 5456]
 gi|123977847|gb|ABM80128.1| predicted Fe-S osidoreductase [Hyperthermus butylicus DSM 5456]
          Length = 345

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 69  QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            L + +       E    +  LTGGEPL+    P L + +   G    V TN T+
Sbjct: 48  SLEEKLRLVREIAELGVEHVGLTGGEPLIHPHFPRLAREIVDHGMTYHVVTNATM 102


>gi|118478814|ref|YP_895965.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           str. Al Hakam]
 gi|196044540|ref|ZP_03111775.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           03BB108]
 gi|225865551|ref|YP_002750929.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           03BB102]
 gi|118418039|gb|ABK86458.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           str. Al Hakam]
 gi|196024575|gb|EDX63247.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           03BB108]
 gi|225786709|gb|ACO26926.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           03BB102]
          Length = 338

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  +  +  +     + D++  +       G ++ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGPD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ LNK  G E I + TNG++      D        + VS
Sbjct: 75  GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126


>gi|104779672|ref|YP_606170.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           entomophila L48]
 gi|95108659|emb|CAK13353.1| coenzyme PQQ synthesis protein E (Coenzyme PQQ synthesis protein
           III) [Pseudomonas entomophila L48]
          Length = 372

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C          +G   +  Q   ++ E    G  +      +
Sbjct: 6   PLWLLAELTYRCPLQCPYCSNPLDF--AEQGKELSTAQWFKVMAEAREMGAAQ---IGFS 60

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    + G+   + T+G
Sbjct: 61  GGEPLVRQDLAELIGEARRLGYYTNLITSG 90


>gi|49478276|ref|YP_037649.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|49329832|gb|AAT60478.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar konkukian str. 97-27]
          Length = 338

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  +  +  +     + D++  +       G ++ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGPD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ LNK  G E I + TNG++      D        + VS
Sbjct: 75  GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126


>gi|52141964|ref|YP_084863.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus E33L]
 gi|51975433|gb|AAU16983.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus E33L]
          Length = 338

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  +  +  +     + D++  +       G ++ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGPD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ LNK  G E I + TNG++      D        + VS
Sbjct: 75  GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126


>gi|311899066|dbj|BAJ31474.1| putative molybdenum cofactor biosynthesis protein A [Kitasatospora
           setae KM-6054]
          Length = 346

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 28/128 (21%)

Query: 21  GRVAVFCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           GR AV  R S    CNL           +C +C  +       K      +++  L+   
Sbjct: 24  GRRAVDLRVSLTDRCNL-----------RCTYCMPEEGLSWLGKPELLTDEEIVRLVA-- 70

Query: 78  WITGEKEGRYCVLTGGEPLLQVDV----PLIQALNKRGFEIAVETNG---TIEPP----Q 126
              G    R    TGGEPLL+  +        AL  R  E+++ TNG       P     
Sbjct: 71  LAVGTLGVREVRFTGGEPLLRPGLVGIIAACAALEPRP-EVSLTTNGIGLARIAPALRDA 129

Query: 127 GIDWICVS 134
           G+D + VS
Sbjct: 130 GVDRVNVS 137


>gi|269792527|ref|YP_003317431.1| Radical SAM domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100162|gb|ACZ19149.1| Radical SAM domain protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 324

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 26/120 (21%)

Query: 31  GCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEG 85
           GCNL           +C FC       V      G     + +Q+ADL E   +      
Sbjct: 73  GCNL-----------RCPFCQNHPISQVQGGCFPGELTLLSPEQVADLAESNGL------ 115

Query: 86  RYCVLTGGEPLLQVDVPLIQA---LNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
           R    T  EPL+ ++  L++A   L  RG  + + TNGT+ P    + + +   A  D+K
Sbjct: 116 RAVAFTYNEPLIHMEY-LLEASRVLKARGLGVVLVTNGTVSPDPLAELMGLVDAANVDVK 174


>gi|226951887|ref|ZP_03822351.1| coenzyme PQQ synthesis protein E (coenzyme PQQ synthesis protein
           III) [Acinetobacter sp. ATCC 27244]
 gi|294649144|ref|ZP_06726585.1| coenzyme PQQ synthesis protein E (pyrroloquinoline quinone
           biosynthesis protein E) [Acinetobacter haemolyticus ATCC
           19194]
 gi|226837427|gb|EEH69810.1| coenzyme PQQ synthesis protein E (coenzyme PQQ synthesis protein
           III) [Acinetobacter sp. ATCC 27244]
 gi|292824942|gb|EFF83704.1| coenzyme PQQ synthesis protein E (pyrroloquinoline quinone
           biosynthesis protein E) [Acinetobacter haemolyticus ATCC
           19194]
          Length = 384

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 20/174 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    D+   +          +  +++++    G  +  +  
Sbjct: 8   PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFEVLDQARQMGAVQLGF-- 61

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140
            +GGEPL+ Q    L+   ++ GF   + T+G        +     G+D I +S +A   
Sbjct: 62  -SGGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTQQRISHLKHVGLDHIQISFQASDP 120

Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
           +        K  F Q     +    +D+    L  +      +  +  I  C +
Sbjct: 121 VVNDALAGSKHAFEQKYEMCQLVKKYDYP-MVLNFVIHRHNIDQIDKIIELCLE 173


>gi|330431399|gb|AEC16458.1| pyruvate formate lyase-activating enzyme 1 [Gallibacterium anatis
           UMN179]
          Length = 246

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G    V++L   +     
Sbjct: 21  IRFILFTQGC-----------LMRCKYCHNRDT----WDLHSGKEITVEELMKEVVTYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                G     +GGE +LQ +      +A  K G    ++TNG
Sbjct: 66  FMNASGGGVTASGGEAILQPEFIRDWFRACKKEGIHTCLDTNG 108


>gi|327393327|dbj|BAK10749.1| pyruvate formate-lyase 1- activating enzyme PflA [Pantoea ananatis
           AJ13355]
          Length = 290

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 48/159 (30%), Gaps = 40/159 (25%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 71  FQGC-----------LMRCLYCHNRDT----WDTHAGKEITVEALMADVLSYRHFMNASG 115

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI--------EPPQGIDWICVSP 135
                +GGE +LQ +      +A    G    ++TNG +        E     D + +  
Sbjct: 116 GGVTASGGEAILQAEFVRDWFRACKAEGIHTCLDTNGFVRRYDPVIDELLDATDLVMLDL 175

Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
           K   D              Q+ V   N+   DF R  LQ
Sbjct: 176 KQMNDE-----------VHQILVGVSNHRTLDFAR-YLQ 202


>gi|325849304|ref|ZP_08170721.1| radical SAM domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480166|gb|EGC83235.1| radical SAM domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 412

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 23/97 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CRFC             + N   L D+        +   R  ++T
Sbjct: 74  CNL-----------NCRFC----SMRSNLLERKVNSINLLDMDTIIGSIEKINPRKIIIT 118

Query: 92  GGEPLLQVDVPLIQALNKRGF------EIAVETNGTI 122
           GGEP    +  L+  L    F      +I ++TNGT+
Sbjct: 119 GGEPT--KNSDLLDILKLIKFNNNISSKIYLQTNGTL 153


>gi|291616899|ref|YP_003519641.1| PflA [Pantoea ananatis LMG 20103]
 gi|291151929|gb|ADD76513.1| PflA [Pantoea ananatis LMG 20103]
          Length = 290

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 48/159 (30%), Gaps = 40/159 (25%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 71  FQGC-----------LMRCLYCHNRDT----WDTHAGKEITVEALMADVLSYRHFMNASG 115

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI--------EPPQGIDWICVSP 135
                +GGE +LQ +      +A    G    ++TNG +        E     D + +  
Sbjct: 116 GGVTASGGEAILQAEFVRDWFRACKAEGIHTCLDTNGFVRRYDPVIDELLDATDLVMLDL 175

Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
           K   D              Q+ V   N+   DF R  LQ
Sbjct: 176 KQMNDE-----------VHQILVGVSNHRTLDFAR-YLQ 202


>gi|322434009|ref|YP_004216221.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321161736|gb|ADW67441.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 352

 Score = 41.9 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 23/117 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C               +  ++ ++       G        ++
Sbjct: 54  CNL-----------ACTYC--------NEFDQTSDPVEIVEMERRIDELGRLGTAVITIS 94

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
           GGEPLL  ++  +I  + K G    + TNG +  P  I+ +    KAG D       
Sbjct: 95  GGEPLLHPELDRIIARIRKTGAIAGMITNGYLLMPDRIERLN---KAGLDHMQISID 148


>gi|157144549|ref|YP_001451868.1| ribosomal RNA large subunit methyltransferase N [Citrobacter koseri
           ATCC BAA-895]
 gi|205829699|sp|A8AD69|RLMN_CITK8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157081754|gb|ABV11432.1| hypothetical protein CKO_00268 [Citrobacter koseri ATCC BAA-895]
          Length = 388

 Score = 41.9 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 181

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 239

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N         D  R  LQ            + I Y  
Sbjct: 240 APN-DEIRDEIVPINRKYNIETFLDAVRRYLQ----KSNANQGRVTIEYVM 285


>gi|153868724|ref|ZP_01998475.1| radical SAM family protein [Beggiatoa sp. PS]
 gi|152074695|gb|EDN71526.1| radical SAM family protein [Beggiatoa sp. PS]
          Length = 367

 Score = 41.9 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 62/175 (35%), Gaps = 30/175 (17%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDV-PL 103
           +C FC  D++   G    R +V  L   + E    G K   Y    G GEPLL  ++  +
Sbjct: 51  RCTFCAVDYI---GYNPVRLDVALLKKRLPEMGQLGIKSIMYA---GEGEPLLHKEIVEI 104

Query: 104 IQALNKRGFEIAVETNGTIEP-------PQGIDWICVSPKAGCDLKIKGGQELKL-VFPQ 155
           +      G ++A  TN TI P          I WI VS  AG           K   F +
Sbjct: 105 VNLTKNAGIDVAFTTNATIFPKGFIEQALPQISWIKVSINAGTPTTYARIHRTKEKDFAK 164

Query: 156 VNVSPENYIGFDFERF---------SLQPMDGPFLEENTNLA-----ISYCFQNP 196
           V  + +  + +  E            L P +   +EE   +      I Y    P
Sbjct: 165 VIENLKTAVAYKKEHHLPVTLGAQALLLPENANEMEELARICRDEIGIDYLVVKP 219


>gi|15789414|ref|NP_279238.1| hypothetical protein VNG0085G [Halobacterium sp. NRC-1]
 gi|10579736|gb|AAG18718.1| molybdenum cofactor biosynthesis protein [Halobacterium sp. NRC-1]
          Length = 367

 Score = 41.9 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 11/97 (11%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR +  C +C      DT      G    R N      ++    +  E       LTGGE
Sbjct: 29  DRCNFDCVYCHNEGLGDTR-----GPIDPRENELSTDRVVRFLSVAHEFGVDAVKLTGGE 83

Query: 95  PLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           P+L+ D+  I         +++ TNGT  P +  D +
Sbjct: 84  PMLRSDLEAIIRRTPDDMAVSMTTNGTFLPGRAADLV 120


>gi|169235126|ref|YP_001688326.1| molybdenum cofactor biosynthesis protein moaA [Halobacterium
           salinarum R1]
 gi|24212011|sp|Q9HST4|MOAA_HALSA RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|226704849|sp|B0R2L5|MOAA_HALS3 RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|167726192|emb|CAP12969.1| molybdenum cofactor biosynthesis protein moaA [Halobacterium
           salinarum R1]
          Length = 357

 Score = 41.9 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 11/97 (11%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR +  C +C      DT      G    R N      ++    +  E       LTGGE
Sbjct: 19  DRCNFDCVYCHNEGLGDTR-----GPIDPRENELSTDRVVRFLSVAHEFGVDAVKLTGGE 73

Query: 95  PLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           P+L+ D+  I         +++ TNGT  P +  D +
Sbjct: 74  PMLRSDLEAIIRRTPDDMAVSMTTNGTFLPGRAADLV 110


>gi|302526344|ref|ZP_07278686.1| radical SAM domain-containing protein [Streptomyces sp. AA4]
 gi|302435239|gb|EFL07055.1| radical SAM domain-containing protein [Streptomyces sp. AA4]
          Length = 333

 Score = 41.9 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 32/98 (32%), Gaps = 20/98 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL  G         C                R  V+Q    IEE             + 
Sbjct: 38  CNLKCG--------GCG----KIAQPHTLLKQRMPVEQAVGAIEESG------APMVSIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGI 128
           GGEPL+   +  + + L  R   I + TN  +  P+ I
Sbjct: 80  GGEPLMHPQIDEITRQLLARNKIIFLCTN-ALLLPKHI 116


>gi|238786698|ref|ZP_04630499.1| pyruvate formate-lyase 3-activating enzyme [Yersinia frederiksenii
           ATCC 33641]
 gi|238725066|gb|EEQ16705.1| pyruvate formate-lyase 3-activating enzyme [Yersinia frederiksenii
           ATCC 33641]
          Length = 299

 Score = 41.9 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           G   ++D   D +        + G    L+GGEP +Q +V   L+Q  +K G    VE+
Sbjct: 101 GNPIDIDATMDTLLRDLPFYRRSGGGVTLSGGEPFMQPEVAAELLQRCHKLGIHTTVES 159


>gi|303326380|ref|ZP_07356823.1| radical SAM domain protein [Desulfovibrio sp. 3_1_syn3]
 gi|302864296|gb|EFL87227.1| radical SAM domain protein [Desulfovibrio sp. 3_1_syn3]
          Length = 391

 Score = 41.9 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           C L +       +  C+ C            G  + D+   LI+     G       + T
Sbjct: 45  CRLVAWEVTRSCNLACKHC--RAEAHPEPYPGELSTDEAKALIDTFPQVG---NPIIIFT 99

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127
           GG+P+++ DV  L+   + +G   A   NGT+  P+ 
Sbjct: 100 GGDPMMRPDVYELVAYTHAKGLTCAFSPNGTLITPES 136


>gi|291276833|ref|YP_003516605.1| molybdenum cofactor biosynthesis protein A [Helicobacter mustelae
           12198]
 gi|290964027|emb|CBG39866.1| molybdenum cofactor biosynthesis protein A [Helicobacter mustelae
           12198]
          Length = 323

 Score = 41.9 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 8/74 (10%)

Query: 46  QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP- 102
           +C++C  +T F      +     ++ + + ++     G K+ R   +TGGEPLL+ D+P 
Sbjct: 24  RCQYCMPNTPFDMPDKEEY--VPLENVLEFLKVGINQGIKKIR---ITGGEPLLRQDLPD 78

Query: 103 LIQALNKRGFEIAV 116
            I AL     E+ +
Sbjct: 79  FIAALRAYSKEVEL 92


>gi|241668437|ref|ZP_04756015.1| radical SAM family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876970|ref|ZP_05249680.1| radical SAM family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842991|gb|EET21405.1| radical SAM family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 360

 Score = 41.9 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 16/92 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       R S++C          +      ++ ++   +I+      E      VL+
Sbjct: 16  CNLKCV--HCRSSSEC----------EVVGHRDFSTEEGFRIIDNIV---EFAKPVLVLS 60

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D+  L +    +G  +A+ TNG++
Sbjct: 61  GGEPLLRADIFELAEYGASKGLRMALATNGSL 92


>gi|91776033|ref|YP_545789.1| pyrroloquinoline quinone biosynthesis protein PqqE [Methylobacillus
           flagellatus KT]
 gi|91710020|gb|ABE49948.1| Coenzyme PQQ biosynthesis protein E [Methylobacillus flagellatus
           KT]
          Length = 397

 Score = 41.9 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R    C FC   TD+           + +Q   ++ +    G  +     
Sbjct: 20  PLWLLAEVTYRCPLHCAFCYNPTDY---DKHTKNELSTEQWIQVLRDARKLGALQLG--- 73

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           ++GGEPLL+ D+  ++   +  G+   + T+G
Sbjct: 74  ISGGEPLLRDDIEDIVAEASSLGYYTNLITSG 105


>gi|205358099|ref|ZP_02575805.2| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|62127127|gb|AAX64830.1| pyruvate formate lyase activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|205327467|gb|EDZ14231.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|323129235|gb|ADX16665.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|326627221|gb|EGE33564.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 292

 Score = 41.9 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 58/177 (32%), Gaps = 36/177 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 73  FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEDLMKEVVTYRHFMNASG 117

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKAGCDL 141
                +GGE +LQ +      +A  K G    ++TNG        ID  + V+     DL
Sbjct: 118 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDL 177

Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
           K     E+     Q  V   N+   +F ++          ++N  + I Y    P W
Sbjct: 178 KQMN-DEI----HQNLVGVSNHRTLEFAQY--------LSKKNVKVWIRYVVV-PGW 220


>gi|150016880|ref|YP_001309134.1| radical SAM domain-containing protein [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903345|gb|ABR34178.1| Radical SAM domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 329

 Score = 41.9 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   +        G  N ++   LI++     +   +  + +
Sbjct: 13  CNL-----------KCSHC---YRDSGKESQGELNTEEAKLLIDQ---IAKANFKIMIFS 55

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPL++ D+  LI   +K G    + TNGT+
Sbjct: 56  GGEPLMREDIFELINYASKAGLRPVLGTNGTL 87


>gi|313892882|ref|ZP_07826459.1| molybdenum cofactor biosynthesis protein A [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442235|gb|EFR60650.1| molybdenum cofactor biosynthesis protein A [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 321

 Score = 41.9 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 21/107 (19%)

Query: 27  CRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            R S    CN             C +C         ++    +VD+   ++E     G K
Sbjct: 12  VRLSLTDACNFC-----------CPYC-RPAEITPQSQTQLLSVDEWMTILEAFHRIGVK 59

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGFE--IAVETNGTIEPPQG 127
             R   LTGGEPLL   +  L+  +N  G+   I++ TNG++   + 
Sbjct: 60  AVR---LTGGEPLLYPHIEELLGRINDTGWFEDISMTTNGSLLASRA 103


>gi|170289684|ref|YP_001736500.1| Fe-S oxidoreductase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173764|gb|ACB06817.1| Predicted Fe-S oxidoreductase [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 573

 Score = 41.9 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 10/92 (10%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGG---RYNVDQLADLIEEQWITGEKEGRYCVL 90
           L +    +R +  C +C          + G     +++++  +++         G    +
Sbjct: 122 LANLVVTNRCNMDCWYC-----FFYAERMGYVYEPSLEEIDRMVDLMLKEKPAHGNAVQI 176

Query: 91  TGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
           TGGEPLL+ D+  +++ L ++G   I + T G
Sbjct: 177 TGGEPLLRDDIVEIVKLLKRKGVTHIQLNTEG 208


>gi|30263518|ref|NP_845895.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           Ames]
 gi|47528911|ref|YP_020260.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186368|ref|YP_029620.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           Sterne]
 gi|65320845|ref|ZP_00393804.1| COG2896: Molybdenum cofactor biosynthesis enzyme [Bacillus
           anthracis str. A2012]
 gi|165871039|ref|ZP_02215690.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0488]
 gi|167636277|ref|ZP_02394579.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0442]
 gi|167640544|ref|ZP_02398806.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0193]
 gi|170688439|ref|ZP_02879647.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0465]
 gi|170708165|ref|ZP_02898612.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0389]
 gi|177652522|ref|ZP_02934989.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0174]
 gi|190564908|ref|ZP_03017829.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis
           Tsiankovskii-I]
 gi|227813602|ref|YP_002813611.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           CDC 684]
 gi|229603477|ref|YP_002867763.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0248]
 gi|254686135|ref|ZP_05149994.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           CNEVA-9066]
 gi|254723532|ref|ZP_05185320.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A1055]
 gi|254738607|ref|ZP_05196310.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744833|ref|ZP_05202511.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           Kruger B]
 gi|254752925|ref|ZP_05204961.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           Vollum]
 gi|254759197|ref|ZP_05211223.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           Australia 94]
 gi|254811535|sp|C3LA56|MOAA_BACAC RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|30258153|gb|AAP27381.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           Ames]
 gi|47504059|gb|AAT32735.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49180295|gb|AAT55671.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           Sterne]
 gi|164713250|gb|EDR18776.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0488]
 gi|167511412|gb|EDR86796.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0193]
 gi|167528300|gb|EDR91072.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0442]
 gi|170126973|gb|EDS95853.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0389]
 gi|170667609|gb|EDT18364.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0465]
 gi|172082196|gb|EDT67263.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0174]
 gi|190564225|gb|EDV18189.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006379|gb|ACP16122.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           CDC 684]
 gi|229267885|gb|ACQ49522.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0248]
          Length = 338

 Score = 41.9 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  +  +  +     + D++  +       G ++ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGPD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ LNK  G E I + TNG++      D        + VS
Sbjct: 75  GEPLLRRGLPQLIERLNKVDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126


>gi|329929622|ref|ZP_08283321.1| pyruvate formate-lyase 1-activating enzyme [Paenibacillus sp. HGF5]
 gi|328935999|gb|EGG32453.1| pyruvate formate-lyase 1-activating enzyme [Paenibacillus sp. HGF5]
          Length = 241

 Score = 41.9 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 51/154 (33%), Gaps = 44/154 (28%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F T+ G G          RF     GC             +C++C   DT        
Sbjct: 10  ETFGTVDGPG---------IRFVLFMQGC-----------LLKCQYCHNPDT----WGLH 45

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-----GFEIA 115
           +G    VD +   IE         G    ++GGEP LQ   P +  L K           
Sbjct: 46  EGHEMTVDDVLREIEPYLSYYRSSGGGLTVSGGEPTLQ--YPFVTELFKEVKRRWNLHTT 103

Query: 116 VETNGTIEPP------QGIDWICVSPKAGCDLKI 143
           +++NG  EP       +  D + +  K   D K 
Sbjct: 104 LDSNGYNEPDKISELLEHTDLVLLDLKHINDEKH 137


>gi|320085207|emb|CBY94993.1| pyruvate formate lyase activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 292

 Score = 41.9 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 58/177 (32%), Gaps = 36/177 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 73  FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEDLMKEVVTYRHFMNASG 117

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKAGCDL 141
                +GGE +LQ +      +A  K G    ++TNG        ID  + V+     DL
Sbjct: 118 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDL 177

Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
           K     E+     Q  V   N+   +F ++          ++N  + I Y    P W
Sbjct: 178 KQMN-DEI----HQNLVGVSNHRTLEFAQY--------LSKKNVKVWIRYVVV-PGW 220


>gi|218780045|ref|YP_002431363.1| glycyl-radical enzyme activating protein family [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761429|gb|ACL03895.1| Alkylsuccinate synthase (II) glycyl radical activating enzyme
           (AssD2) [Desulfatibacillum alkenivorans AK-01]
          Length = 319

 Score = 41.9 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119
           G    V+++ D +E      E  G    L+GGEP         ++     RG    ++TN
Sbjct: 114 GQAMTVEEILDEVESDRPFYENSGGGMTLSGGEPTAHPAFSEKILAGAKARGLHTCLDTN 173

Query: 120 G 120
           G
Sbjct: 174 G 174


>gi|94967910|ref|YP_589958.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549960|gb|ABF39884.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 351

 Score = 41.9 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 14/102 (13%)

Query: 40  QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ- 98
             R   +C  CD      +  +    + D L   +  +      +  + VLTGGEPL+  
Sbjct: 38  HSRCQCKCVMCD----IWRTRESQELDFDLL---VRNRDAFAGLKIEWVVLTGGEPLMHS 90

Query: 99  VDVPLIQALNKRGFEIAVETNG------TIEPPQGIDWICVS 134
             + +   L + G  I + T G        E    +D + +S
Sbjct: 91  RFIDICTFLKQEGVRITLLTAGMSLAKRASEVANCVDEVIIS 132


>gi|257456566|ref|ZP_05621761.1| molybdenum cofactor biosynthesis protein A [Treponema vincentii
           ATCC 35580]
 gi|257445986|gb|EEV21034.1| molybdenum cofactor biosynthesis protein A [Treponema vincentii
           ATCC 35580]
          Length = 319

 Score = 41.9 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +CR+C     G+      +  + +  +++    +      ++  +TGGEPL++  
Sbjct: 18  DRCNFRCRYC-MPVQGVDYVAHDQ--ILRFEEILRISRLLPRLGIKHIKITGGEPLVRKG 74

Query: 101 V-PLIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134
           +  LI+ L    G E + + TNG +           GID + VS
Sbjct: 75  ICALIKDLKALEGIEQVTLTTNGYLLEQAAEKLKAAGIDAVNVS 118


>gi|53804818|ref|YP_113314.1| MoaA/NifB/PqqE family protein [Methylococcus capsulatus str. Bath]
 gi|53758579|gb|AAU92870.1| MoaA/NifB/PqqE family protein [Methylococcus capsulatus str. Bath]
          Length = 371

 Score = 41.9 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C                R +V++    ++E       +     + 
Sbjct: 38  CNLAC--------AGCG----KIDYPDEILNRRLSVEESLQAVDE------CDAPIVSIA 79

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPLL  ++P +++ +  R   + + TN  +   + ID    SP     + + G +E
Sbjct: 80  GGEPLLHKELPEIVRGIIARKKYVYLCTN-ALLLKKRIDDYEPSPFLTLSIHLDGNRE 136


>gi|302325942|gb|ADL25143.1| radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 336

 Score = 41.9 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C+ C   +      K      D+   LI+E    G    +  + +
Sbjct: 17  CNLT-----------CKHC---YQDAGENKSAELTTDEALKLIDEIAKAG---FKIMIFS 59

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEP+ + D+  L+    +RG      TNGT+
Sbjct: 60  GGEPMTRPDIVELVAHARERGLRPVFGTNGTL 91


>gi|301513618|ref|ZP_07238855.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
           baumannii AB058]
          Length = 384

 Score = 41.9 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 20/174 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    D+   +          +  D+ ++    G  +  +  
Sbjct: 8   PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFDVFDQARQMGAVQLGF-- 61

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140
            +GGEPL+ Q    L+   ++ GF   + T+G        +     G+D I +S +A   
Sbjct: 62  -SGGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTEQRISHLKQAGLDHIQISFQASDP 120

Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
           +        K  F Q          +D+    L  +      +  +  I  C +
Sbjct: 121 VVNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIDKIIELCLE 173


>gi|302334931|ref|YP_003800138.1| glycyl-radical enzyme activating protein family [Olsenella uli DSM
           7084]
 gi|301318771|gb|ADK67258.1| glycyl-radical enzyme activating protein family [Olsenella uli DSM
           7084]
          Length = 315

 Score = 41.9 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 12/80 (15%)

Query: 50  CD--TDFVGIQG-------TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99
           CD  T    +           G    VD + D I        +      ++GG+PLL   
Sbjct: 98  CDKCTTHECVDACFQEALAVSGKEMTVDDVMDKIRRDSPV-FRGKGGVTVSGGDPLLYPE 156

Query: 100 -DVPLIQALNKRGFEIAVET 118
               L+      G+ +A+E+
Sbjct: 157 FLAELLGRCRDEGYSVALES 176


>gi|289578151|ref|YP_003476778.1| radical SAM protein [Thermoanaerobacter italicus Ab9]
 gi|289527864|gb|ADD02216.1| Radical SAM domain protein [Thermoanaerobacter italicus Ab9]
          Length = 726

 Score = 41.9 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 11/76 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPL 103
            C FC     G Q      ++  QL   ++           +  +TGGEPL++     PL
Sbjct: 421 NCNFC--QIGGPQKDTNKSFDYKQLVRFLK-------GNNYHIQITGGEPLIRKSELTPL 471

Query: 104 IQALNKRGFEIAVETN 119
           I+ L K G  I + TN
Sbjct: 472 IRELKKDGHIITLLTN 487


>gi|228940652|ref|ZP_04103217.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973571|ref|ZP_04134154.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980129|ref|ZP_04140444.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           Bt407]
 gi|228779611|gb|EEM27863.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           Bt407]
 gi|228786158|gb|EEM34154.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228819031|gb|EEM65091.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 340

 Score = 41.9 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  +  +   K    + D++  +       G ++ R   +TG
Sbjct: 24  DRCNFRCRYCMPEEIFGPD--YSFLSNEK--ILSFDEIERITRIFVSLGVRKLR---ITG 76

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ LNK  G E I + TNG++      D        + VS
Sbjct: 77  GEPLLRRGLPKLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 128


>gi|197119849|ref|YP_002140276.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
 gi|197089209|gb|ACH40480.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
          Length = 316

 Score = 41.9 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 15/101 (14%)

Query: 31  GC-NLWSGREQDRLS---AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           GC N++ G   D  S    +C++C   +    G    R   + +AD IE + +       
Sbjct: 55  GCKNVYDGYMIDVTSQCNLKCKYC---YHANGGEH--RAAAEVIADAIEHRHLGPT---- 105

Query: 87  YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQG 127
             +LTGGEP L  D+P +        E  V TNG     +G
Sbjct: 106 --ILTGGEPTLHPDLPAMVRELAPWNETWVLTNGVKMADEG 144


>gi|261417406|ref|YP_003251089.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373862|gb|ACX76607.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 330

 Score = 41.9 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C+ C   +      K      D+   LI+E    G    +  + +
Sbjct: 11  CNLT-----------CKHC---YQDAGENKSAELTTDEALKLIDEIAKAG---FKIMIFS 53

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEP+ + D+  L+    +RG      TNGT+
Sbjct: 54  GGEPMTRPDIVELVAHARERGLRPVFGTNGTL 85


>gi|331697466|ref|YP_004333705.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Pseudonocardia dioxanivorans CB1190]
 gi|326952155|gb|AEA25852.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Pseudonocardia dioxanivorans CB1190]
          Length = 334

 Score = 41.9 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 20/98 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C             R  V+Q    IEE             + 
Sbjct: 38  CNL-----------KCNGCG-KIQQPAALLKQRMPVEQAVAAIEESG------APMVSIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGI 128
           GGEPL+   +  +++ L  R   + + TN  +  P+ I
Sbjct: 80  GGEPLMHPQIDEIVRQLLDRNKIVFLCTN-AVLLPKHI 116


>gi|326941284|gb|AEA17180.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 338

 Score = 41.9 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  +  +   K    + D++  +       G ++ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGPD--YSFLSNEK--ILSFDEIERITRIFVSLGVRKLR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ LNK  G E I + TNG++      D        + VS
Sbjct: 75  GEPLLRRGLPKLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126


>gi|302342600|ref|YP_003807129.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075]
 gi|301639213|gb|ADK84535.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075]
          Length = 315

 Score = 41.9 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDV 101
           +  C +C+      + T+ GR+   + +   + ++    +    +  L G GEP L +D+
Sbjct: 37  TLDCVYCECGPTTQKTTQRGRFRPAEDVLAQVRKRLEQLDVPPDHITLAGSGEPTLHLDL 96

Query: 102 PL-IQALNK--RGFEIAVETNGTI 122
            L ++ L +   G  +AV TNGT+
Sbjct: 97  GLVLRRLREMNAG-RVAVLTNGTL 119


>gi|170290655|ref|YP_001737471.1| molybdenum cofactor biosynthesis protein A [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174735|gb|ACB07788.1| molybdenum cofactor biosynthesis protein A [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 310

 Score = 41.9 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 18/124 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104
            C FC          +G     +++  L+    +  +   +   LTGGEPL++ D+  ++
Sbjct: 24  NCFFC---HREGHYVRGEEMRPEEIGRLM---RVLSKHGVKRVKLTGGEPLMRRDLEEIV 77

Query: 105 QALNKRGF-EIAVETNGTIEP-------PQGIDWICV---SPKAGCDLKIKGGQELKLVF 153
             L   G  E+++ TNG             G+D I V   S K     +I G   L+ V 
Sbjct: 78  SELKSSGAEEVSLVTNGYFLVERARGLREAGLDRINVSLHSLKRDVYERITGVDGLERVL 137

Query: 154 PQVN 157
             ++
Sbjct: 138 KGID 141


>gi|30021670|ref|NP_833301.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC
           14579]
 gi|228959754|ref|ZP_04121429.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229110990|ref|ZP_04240550.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock1-15]
 gi|229128840|ref|ZP_04257816.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           BDRD-Cer4]
 gi|229146135|ref|ZP_04274511.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           BDRD-ST24]
 gi|29897225|gb|AAP10502.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC
           14579]
 gi|228637346|gb|EEK93800.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           BDRD-ST24]
 gi|228654545|gb|EEL10407.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           BDRD-Cer4]
 gi|228672474|gb|EEL27758.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock1-15]
 gi|228799884|gb|EEM46826.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 340

 Score = 41.9 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  F+          + D++  +       G ++ R   +TG
Sbjct: 24  DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 76

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ LNK  G E I + TNG++      D        + VS
Sbjct: 77  GEPLLRRGLPKLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 128


>gi|15643588|ref|NP_228634.1| astB/chuR-related protein [Thermotoga maritima MSB8]
 gi|4981357|gb|AAD35907.1|AE001750_1 astB/chuR-related protein [Thermotoga maritima MSB8]
          Length = 323

 Score = 41.9 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100
           R + +C+ C   +           + +++ +LI +    G          GGEPLL    
Sbjct: 15  RCNFRCKHC---YCEAGKPHLEELSFEEIKELILDMKELGTWALDIV---GGEPLLHPQI 68

Query: 101 VPLIQALNKRGFEIAVETNGTIE 123
           + ++    + G  + + TNG++ 
Sbjct: 69  LDILAFGKEVGQRLMINTNGSLA 91


>gi|314935815|ref|ZP_07843167.1| molybdenum cofactor biosynthesis protein A [Staphylococcus hominis
           subsp. hominis C80]
 gi|313656380|gb|EFS20120.1| molybdenum cofactor biosynthesis protein A [Staphylococcus hominis
           subsp. hominis C80]
          Length = 340

 Score = 41.9 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D DFV +          D++  + +     G K+ R   +TGG
Sbjct: 22  DRCNFRCDYCMPKEIFGD-DFVFLPKE--ELLTFDEITTIAKVYAELGVKKLR---ITGG 75

Query: 94  EPLLQVDV-PLIQALNK-RGFE-IAVETNG 120
           EPLL+ D+  LI+ LN+  G E I + TNG
Sbjct: 76  EPLLRRDLYKLIEKLNRIEGIEDIGLTTNG 105


>gi|311280182|ref|YP_003942413.1| pyruvate formate-lyase activating enzyme [Enterobacter cloacae
           SCF1]
 gi|308749377|gb|ADO49129.1| pyruvate formate-lyase activating enzyme [Enterobacter cloacae
           SCF1]
          Length = 246

 Score = 41.9 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 33/97 (34%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    VD+L   +          G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVDELMKEVVTYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 72  GGVTASGGEAILQAEFVRDWFRACRKEGIHTCLDTNG 108


>gi|229179852|ref|ZP_04307198.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           172560W]
 gi|228603533|gb|EEK61008.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           172560W]
          Length = 340

 Score = 41.9 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  F+          + D++  +       G ++ R   +TG
Sbjct: 24  DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 76

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ LNK  G E I + TNG++      D        + VS
Sbjct: 77  GEPLLRRGLPKLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 128


>gi|218234531|ref|YP_002368381.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus B4264]
 gi|218162488|gb|ACK62480.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus B4264]
          Length = 338

 Score = 41.9 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  F+          + D++  +       G ++ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ LNK  G E I + TNG++      D        + VS
Sbjct: 75  GEPLLRRGLPKLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126


>gi|14520239|ref|NP_125713.1| pyruvate formate-lyase activating enzyme related protein
           [Pyrococcus abyssi GE5]
 gi|5457454|emb|CAB48945.1| Anaerobic ribonucleotide triphosphate reductase activating enzyme
           [Pyrococcus abyssi GE5]
          Length = 240

 Score = 41.9 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 18/99 (18%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
             GCNL      +   A    C               NV+ L + + +  +  +      
Sbjct: 24  LCGCNLKCPFCHNWRIADRLEC------------HELNVNSLMEDLSQSSLFIDYFH--- 68

Query: 89  VLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPP 125
            +TGGEPL+Q      L++ + + G E+++ TN TI  P
Sbjct: 69  -ITGGEPLVQWRELSDLLRKVEEIGVEVSLNTNLTIVRP 106


>gi|238791148|ref|ZP_04634787.1| pyruvate formate-lyase 3-activating enzyme [Yersinia intermedia
           ATCC 29909]
 gi|238729281|gb|EEQ20796.1| pyruvate formate-lyase 3-activating enzyme [Yersinia intermedia
           ATCC 29909]
          Length = 314

 Score = 41.9 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           G   ++D     +        + G    L+GGEP +Q DV   L+Q  ++ G   AVE+
Sbjct: 116 GSPIDIDATMATLLRDMPFYRRSGGGVTLSGGEPFMQPDVAAELLQRCHQLGIHTAVES 174


>gi|115525108|ref|YP_782019.1| pyruvate formate-lyase activating enzyme [Rhodopseudomonas
           palustris BisA53]
 gi|115519055|gb|ABJ07039.1| pyruvate formate-lyase activating enzyme [Rhodopseudomonas
           palustris BisA53]
          Length = 269

 Score = 41.9 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 14/94 (14%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            +GC             +C++C               + + L D+           G   
Sbjct: 53  LAGC-----------LLRCQYCHNPDSWHMHQGKPTNSREVLRDIATYTNFIAHAHGG-V 100

Query: 89  VLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
            L+GGEPL+Q +    +++   + G   A++T G
Sbjct: 101 TLSGGEPLVQPEFAHAILRGCKEMGLHTALDTAG 134


>gi|47568929|ref|ZP_00239621.1| molybdopterin cofactor biosynthesis protein A [Bacillus cereus
           G9241]
 gi|47554413|gb|EAL12772.1| molybdopterin cofactor biosynthesis protein A [Bacillus cereus
           G9241]
          Length = 338

 Score = 41.9 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  F+          + D++  +       G ++ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ LNK  G E I + TNG++      D        + VS
Sbjct: 75  GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126


>gi|332184164|gb|AEE26418.1| Radical SAM domain heme biosynthesis protein [Francisella cf.
           novicida 3523]
          Length = 360

 Score = 41.9 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 24/112 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       R S+ C          +      ++ ++   +I+             VL+
Sbjct: 16  CNLKCV--HCRSSSDC----------EVLGHPDFSTEEGFRIIDS---IAAFANPVLVLS 60

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP--------PQGIDWICVS 134
           GGEPLL+ D+  L Q    +G  +A+ TNG++             I+ + +S
Sbjct: 61  GGEPLLRTDIFELAQYGANKGLRMALATNGSLVTDEICEKIKSSSINIVSLS 112


>gi|329907318|ref|ZP_08274630.1| Molybdenum cofactor biosynthesis protein A [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547006|gb|EGF31898.1| Molybdenum cofactor biosynthesis protein A [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 371

 Score = 41.9 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 25/114 (21%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +  T     + +++  +       G ++ R   LTGGE
Sbjct: 48  DRCNFRCVYCMPKELFDKDYQFLPQT--ALLSFEEITRMARIFIDHGIEKIR---LTGGE 102

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           PLL+  +  LI+ L++      R  +I + TNG++           G+  + VS
Sbjct: 103 PLLRKHLEKLIEMLSRLKTHSGRDLDITLTTNGSLLAKKAQSLKDAGLKRVTVS 156


>gi|313887787|ref|ZP_07821468.1| radical SAM domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846209|gb|EFR33589.1| radical SAM domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 492

 Score = 41.9 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 14/96 (14%)

Query: 32  CNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           CN+      D  SA   +C  C   +    G        +++A +I +    G       
Sbjct: 142 CNIPWTILFDPTSACNLKCTGC---WAAEYG-HKNNLTYEEMASIIRQGNELGTYFF--- 194

Query: 89  VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
           +LTGGEPL++ D  + L +  N   F +   TNGT+
Sbjct: 195 ILTGGEPLVRKDDVIKLAKEFNDSAFHVF--TNGTL 228


>gi|302392807|ref|YP_003828627.1| GTP cyclohydrolase subunit MoaA [Acetohalobium arabaticum DSM 5501]
 gi|302204884|gb|ADL13562.1| GTP cyclohydrolase subunit MoaA [Acetohalobium arabaticum DSM 5501]
          Length = 329

 Score = 41.9 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 51/138 (36%), Gaps = 31/138 (22%)

Query: 41  DRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C     GI   T       ++L D+IE     G K+ R   LTGGEPL++ 
Sbjct: 18  DRCNLRCFYC-MPEDGIDLKTHDEILRYEELYDIIESAVKLGFKKIR---LTGGEPLVRK 73

Query: 100 ---------------DVPLIQ--ALNKRGFEIAVETNGTIEPPQGID--------WICVS 134
                          D+ L     L    +   ++T G       +D         I  S
Sbjct: 74  GLVSFIEELEQLEIEDLALTTNGTLLAE-YAAELKTAGLDRVNISLDTLQPGKFGEITCS 132

Query: 135 PKAGCDLKIKGGQELKLV 152
            K      I+G +E K V
Sbjct: 133 DKYSLSDVIRGIKEAKKV 150


>gi|260550419|ref|ZP_05824630.1| coenzyme PQQ synthesis protein E [Acinetobacter sp. RUH2624]
 gi|260406525|gb|EEX00007.1| coenzyme PQQ synthesis protein E [Acinetobacter sp. RUH2624]
          Length = 384

 Score = 41.9 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 20/174 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    D+   +          +  D+ ++    G  +  +  
Sbjct: 8   PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFDVFDQARQMGAVQLGF-- 61

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140
            +GGEPL+ Q    L+   ++ GF   + T+G        +     G+D I +S +A   
Sbjct: 62  -SGGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTEQRISHLKQAGLDHIQISFQASDP 120

Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
           +        K  F Q          +D+    L  +      +  +  I  C +
Sbjct: 121 VVNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIDKIIELCLE 173


>gi|20091853|ref|NP_617928.1| coenzyme PQQ synthesis protein E [Methanosarcina acetivorans C2A]
 gi|19917045|gb|AAM06408.1| coenzyme PQQ synthesis protein E [Methanosarcina acetivorans C2A]
          Length = 399

 Score = 41.9 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       +        D +F     T+ G+  +D LA                 + +
Sbjct: 50  CNLKCVHCYAQAK------DMEFKNELSTEEGKALIDDLAA----------FGSPVMLFS 93

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           GGEP ++ D+P L     ++G    + TNGT+
Sbjct: 94  GGEPTMRKDLPELAAYAREKGMRAVISTNGTL 125


>gi|320161621|ref|YP_004174846.1| hypothetical protein ANT_22200 [Anaerolinea thermophila UNI-1]
 gi|319995475|dbj|BAJ64246.1| hypothetical protein ANT_22200 [Anaerolinea thermophila UNI-1]
          Length = 798

 Score = 41.9 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-P 102
             +C  C   +    G     +  ++  +L ++    G    R+ V+TGGEPL+  ++ P
Sbjct: 458 PLRCNHC---YAR-GGRHSPAFPAEKAIELAQQASRAG---FRHFVITGGEPLVHPEIFP 510

Query: 103 LIQALN 108
           L++ L 
Sbjct: 511 LLEHLE 516


>gi|300087565|ref|YP_003758087.1| radical SAM domain-containing protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527298|gb|ADJ25766.1| Radical SAM domain protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 381

 Score = 41.9 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR        ++G   G  N ++   LI++    G+      +LT
Sbjct: 26  CNLLC--------EHCR-----ASALKGPYPGELNSEECFRLIDQIHQIGQ---PILILT 69

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D+  +    +K+GF + + TNGT+
Sbjct: 70  GGEPLLREDIFEIAGYASKKGFRVVMGTNGTL 101


>gi|255514059|gb|EET90322.1| Radical SAM domain protein [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 621

 Score = 41.9 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 4/89 (4%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L +    +R    C +C   F   +G      ++ +L  +                +TGG
Sbjct: 164 LANVVVTNRCHLSCWYC--FFYAKEGEAIYEPSIAELDKIFYNLRNQKPIPANALQITGG 221

Query: 94  EPLLQVDV-PLIQALNKRGF-EIAVETNG 120
           EP +   +  +I+   K GF +I + T G
Sbjct: 222 EPTMHPKIVEIIEHAKKAGFDQIQLNTTG 250


>gi|229047248|ref|ZP_04192848.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH676]
 gi|228724115|gb|EEL75460.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH676]
          Length = 340

 Score = 41.9 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  F+          + D++  +       G ++ R   +TG
Sbjct: 24  DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 76

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ LNK  G E I + TNG++      D        + VS
Sbjct: 77  GEPLLRRGLPKLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 128


>gi|229174229|ref|ZP_04301763.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus MM3]
 gi|228609247|gb|EEK66535.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus MM3]
          Length = 338

 Score = 41.9 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  F+          + D++  +       G ++ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ LNK  G E I + TNG++      D        + VS
Sbjct: 75  GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126


>gi|169795962|ref|YP_001713755.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
           baumannii AYE]
 gi|213157303|ref|YP_002319348.1| coenzyme PQQ biosynthesis protein E [Acinetobacter baumannii
           AB0057]
 gi|215483421|ref|YP_002325634.1| coenzyme PQQ biosynthesis protein E [Acinetobacter baumannii
           AB307-0294]
 gi|294838033|ref|ZP_06782716.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
           sp. 6013113]
 gi|294857813|ref|ZP_06795582.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
           sp. 6013150]
 gi|301595350|ref|ZP_07240358.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
           baumannii AB059]
 gi|226704985|sp|B7H2Y0|PQQE_ACIB3 RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|226704986|sp|B7I6M8|PQQE_ACIB5 RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|226704989|sp|B0V494|PQQE_ACIBY RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|169148889|emb|CAM86760.1| coenzyme PQQ synthesis protein E (Coenzyme PQQ synthesis protein
           III) [Acinetobacter baumannii AYE]
 gi|213056463|gb|ACJ41365.1| coenzyme PQQ biosynthesis protein E [Acinetobacter baumannii
           AB0057]
 gi|213988930|gb|ACJ59229.1| coenzyme PQQ biosynthesis protein E [Acinetobacter baumannii
           AB307-0294]
          Length = 384

 Score = 41.9 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 20/174 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    D+   +          +  D+ ++    G  +  +  
Sbjct: 8   PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFDVFDQARQMGAVQLGF-- 61

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140
            +GGEPL+ Q    L+   ++ GF   + T+G        +     G+D I +S +A   
Sbjct: 62  -SGGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTEQRISHLKQAGLDHIQISFQASDP 120

Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
           +        K  F Q          +D+    L  +      +  +  I  C +
Sbjct: 121 VVNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIDKIIELCLE 173


>gi|257076727|ref|ZP_05571088.1| molybdenum cofactor biosynthesis protein A [Ferroplasma acidarmanus
           fer1]
          Length = 608

 Score = 41.9 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L +    +R    C +C   F   +       ++DQ+  ++               +TGG
Sbjct: 146 LGNVVITNRCDLSCWYC--FFYAKENEPIYEPSLDQIRLMLRRMRNEKPVGANAVQITGG 203

Query: 94  EPLLQVD-VPLIQALNKRGFE-IAVETNGTIEPPQGIDWI 131
           EP L+ D + +I+   + G+E + + TN ++      D++
Sbjct: 204 EPTLRDDIIDVIRIAREEGYEHVQMNTN-SVRAAYDPDFV 242


>gi|325273058|ref|ZP_08139367.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas sp.
           TJI-51]
 gi|324101809|gb|EGB99346.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas sp.
           TJI-51]
          Length = 370

 Score = 41.9 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C          +G   N +Q   ++ E    G  +      +
Sbjct: 4   PLWLLAELTYRCPLQCPYCSNPLDF--AAQGQELNTEQWFKVMAEARQMGAAQ---IGFS 58

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    + G+   + T+G
Sbjct: 59  GGEPLVRQDLAELIGEARRLGYYTNLITSG 88


>gi|296504074|ref|YP_003665774.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           BMB171]
 gi|296325126|gb|ADH08054.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           BMB171]
          Length = 338

 Score = 41.9 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  F+          + D++  +       G ++ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ LNK  G E I + TNG++      D        + VS
Sbjct: 75  GEPLLRRGLPKLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126


>gi|288922398|ref|ZP_06416588.1| hopanoid biosynthesis associated radical SAM protein HpnH [Frankia
           sp. EUN1f]
 gi|288346269|gb|EFC80608.1| hopanoid biosynthesis associated radical SAM protein HpnH [Frankia
           sp. EUN1f]
          Length = 310

 Score = 41.9 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 41/133 (30%), Gaps = 23/133 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL                             R +V+     +EE             + 
Sbjct: 38  CNLSCTGCGKIQHPA------------SVLKQRMSVEDALAAVEECG------APVVAIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
           GGEPL+   +  ++  L KR   + + TNG +   + +     SP     L I G   LK
Sbjct: 80  GGEPLMHPQMHEIVNELVKRKKFVILCTNG-LLLQKKLKNFTPSPYFTFVLHIDG---LK 135

Query: 151 LVFPQVNVSPENY 163
                +   P  +
Sbjct: 136 DRHDAIVEKPGTF 148


>gi|283783347|ref|YP_003374101.1| pyruvate formate-lyase 1-activating enzyme [Gardnerella vaginalis
           409-05]
 gi|283442086|gb|ADB14552.1| pyruvate formate-lyase 1-activating enzyme [Gardnerella vaginalis
           409-05]
          Length = 293

 Score = 41.9 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 75/217 (34%), Gaps = 60/217 (27%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G    +D +   ++   
Sbjct: 71  RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMIKKVDRYQ 113

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130
              +  G     +GGE ++Q      + +A  + G    ++T+G      T E  + ID 
Sbjct: 114 SLFKATGGGITFSGGESMMQPAFVSRVFRAAKEMGVHTCLDTSGFLNRNYTDEMIEDIDL 173

Query: 131 ICVSPKAGCDL---KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL---EEN 184
             +  K+G +    K+ GG        Q  +     +    ++  ++ +  P L   EEN
Sbjct: 174 CLLDVKSGTEETYKKVTGG------LLQPTIDFGQRLAKAGKKIWVRFVLVPGLTDSEEN 227

Query: 185 TNLAISYC-----------------FQNPKW---RLS 201
                  C                    PKW   R+S
Sbjct: 228 VEKVAEICDSFGDAVEHIDVLGFHQLGRPKWHELRIS 264


>gi|323343206|ref|ZP_08083437.1| pyruvate formate-lyase activating enzyme [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463270|gb|EFY08465.1| pyruvate formate-lyase activating enzyme [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 181

 Score = 41.9 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 25/100 (25%)

Query: 15  GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI 74
           GEG    R  VF    GC              C  C      I    G    VD++ + I
Sbjct: 16  GEGI---RSVVF--TQGCP-----------HNCPGCHNQRS-IPFDGGELIEVDEVINQI 58

Query: 75  EEQWITGEKEGRYCVLTGGEPLLQVD-VPLI-QALNKRGF 112
            E       + +    +GGEP +Q + + LI + L K G+
Sbjct: 59  LEA------DLKRVTFSGGEPFVQAEQLYLIAKRLKKEGY 92


>gi|229014624|ref|ZP_04171738.1| Radical SAM domain protein [Bacillus mycoides DSM 2048]
 gi|229065107|ref|ZP_04200400.1| Radical SAM domain protein [Bacillus cereus AH603]
 gi|229136283|ref|ZP_04265030.1| Radical SAM domain protein [Bacillus cereus BDRD-ST196]
 gi|228647155|gb|EEL03243.1| Radical SAM domain protein [Bacillus cereus BDRD-ST196]
 gi|228716136|gb|EEL67855.1| Radical SAM domain protein [Bacillus cereus AH603]
 gi|228746635|gb|EEL96524.1| Radical SAM domain protein [Bacillus mycoides DSM 2048]
          Length = 238

 Score = 41.9 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 93  GEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 3   GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 33


>gi|223985163|ref|ZP_03635255.1| hypothetical protein HOLDEFILI_02561 [Holdemania filiformis DSM
           12042]
 gi|223962872|gb|EEF67292.1| hypothetical protein HOLDEFILI_02561 [Holdemania filiformis DSM
           12042]
          Length = 278

 Score = 41.9 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 41/135 (30%)

Query: 24  AVFCRFSGCNLWSG------------------------------REQDRLSAQCRFCDTD 53
           A+F  F GC L                                  +     ++C  CD  
Sbjct: 22  AIF--FQGCPLHCAYCHNPETWRICDHCGQCVAGCPAGALTLHAGKVVWEESRCVGCDQC 79

Query: 54  FVG---IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALN 108
                     K      + L D + E +   +       ++GGE +L  D      + + 
Sbjct: 80  IHVCPHHASCKVSELTPEALLDRVAETFPFIQG----ITVSGGECMLYADFLTEFFRLVK 135

Query: 109 KRGFEIAVETNGTIE 123
             G    +++NG ++
Sbjct: 136 AAGKTCLIDSNGILD 150


>gi|239616700|ref|YP_002940022.1| Radical SAM domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505531|gb|ACR79018.1| Radical SAM domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 481

 Score = 41.9 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 21/92 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C   + G+ G K  + + +++  LI +    G       ++T
Sbjct: 121 CNL-----------NCVGC---YAGLYGRKY-QLSKEEVWSLIRQANELGIYFF---IIT 162

Query: 92  GGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
           GGEP +    +  ++  N   F+I   TNGT+
Sbjct: 163 GGEPFVWPHLMETLKEFNDSYFQIY--TNGTL 192


>gi|330970881|gb|EGH70947.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 389

 Score = 41.9 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C       +  +G   +  Q   +++E    G  +      +
Sbjct: 22  PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELSTAQWFKVMQEAREMGAAQ---IGFS 76

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    + GF   + T+G
Sbjct: 77  GGEPLVRQDLAELIAEARRLGFYTNLITSG 106


>gi|119897531|ref|YP_932744.1| putative qinohemoprotein amine dehydrogenase [Azoarcus sp. BH72]
 gi|119669944|emb|CAL93857.1| conserved hypothetical qinohemoprotein amine dehydrogenase, unknown
           subunit [Azoarcus sp. BH72]
          Length = 476

 Score = 41.9 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 25/83 (30%)

Query: 30  SGCNLWSGREQDRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +GCNL            C +C     DT       + G + ++D     IE        E
Sbjct: 110 TGCNL-----------SCTYCYKEDLDTP------SAGRKMSLDTARASIELLLRESPDE 152

Query: 85  GRY-CVLTGGEPLLQVDVPLIQA 106
            RY  V  GGEPL   ++PLI+A
Sbjct: 153 PRYTVVFFGGEPL--SNLPLIKA 173


>gi|87309369|ref|ZP_01091505.1| radical SAM domain protein [Blastopirellula marina DSM 3645]
 gi|87288008|gb|EAQ79906.1| radical SAM domain protein [Blastopirellula marina DSM 3645]
          Length = 298

 Score = 41.9 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 15/102 (14%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           LW      R +  C  C   FV         G  ++  +   +EE    G KE  +   T
Sbjct: 17  LWFQVTGLRCNLACHHC---FVSCHPKNNTFGFLSLADVESRLEEAAALGVKEFYF---T 70

Query: 92  GGEPLLQVDVP--LIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           GGEP L   +   LI AL   G  + V TNGT+      DW+
Sbjct: 71  GGEPFLHPQIVPILIAAL-AYG-PVTVLTNGTV---LKADWL 107


>gi|23015289|ref|ZP_00055069.1| COG0535: Predicted Fe-S oxidoreductases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 374

 Score = 41.9 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 11/101 (10%)

Query: 23  VAVFCRF--SGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            A   R    G  LW   E   R   QC +C+       G+     + ++   ++ E   
Sbjct: 6   PA--LRLDGQGKPLWLVCELTYRCPLQCSWCNNPLEF--GSITDELSTEEWKRVLAESRA 61

Query: 80  TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
            G  +  +   TGGEP L+ D+  L+   ++ G+   + T+
Sbjct: 62  LGSLQLGF---TGGEPALRPDLEELVAEADRLGYYTNLITS 99


>gi|325526527|gb|EGD04086.1| hypothetical protein B1M_13210 [Burkholderia sp. TJI49]
          Length = 476

 Score = 41.9 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 35/118 (29%)

Query: 30  SGCNLWSGREQDRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +GCNL            C +C     DT       + G R ++D     +E         
Sbjct: 110 TGCNL-----------SCTYCYKEDLDTP------SAGRRMDLDTAKASVEMLLKESPDL 152

Query: 85  GRY-CVLTGGEPLLQVDVPLIQ--------ALNKRGFEIA--VETNGTIEPPQGIDWI 131
            RY  V  GGEPL   +  LI+             G ++   + TN T+   + +DW+
Sbjct: 153 PRYTVVFFGGEPL--SNRKLIETMVEYCELRFGALGKQVEFVMTTNATLLTEEIVDWL 208


>gi|306824472|ref|ZP_07457818.1| pyruvate formate-lyase activating enzyme [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304433259|gb|EFM36229.1| pyruvate formate-lyase activating enzyme [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 264

 Score = 41.9 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 21/99 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC++           +C++C   DT +         R   D L + +  +   G
Sbjct: 33  VF--LQGCHM-----------RCQYCHNPDT-WAMETNKSRERTVDDVLTEALRYRGFWG 78

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           +K G    ++GGE LLQ+D  + L     ++G    ++T
Sbjct: 79  DKGG--ITVSGGEALLQIDFLIALFTKAKEKGIHCTLDT 115


>gi|239502592|ref|ZP_04661902.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
           baumannii AB900]
 gi|260555008|ref|ZP_05827229.1| coenzyme PQQ biosynthesis protein E [Acinetobacter baumannii ATCC
           19606]
 gi|260411550|gb|EEX04847.1| coenzyme PQQ biosynthesis protein E [Acinetobacter baumannii ATCC
           19606]
          Length = 384

 Score = 41.9 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 20/174 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    D+   +          +  D+ ++    G  +  +  
Sbjct: 8   PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFDVFDQARQMGAVQLGF-- 61

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140
            +GGEPL+ Q    L+   ++ GF   + T+G        +     G+D I +S +A   
Sbjct: 62  -SGGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTEQRISHLKQAGLDHIQISFQASDP 120

Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
           +        K  F Q          +D+    L  +      +  +  I  C +
Sbjct: 121 VVNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIDKIIELCLE 173


>gi|255654246|ref|ZP_05399655.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile QCD-23m63]
 gi|296452531|ref|ZP_06894228.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           NAP08]
 gi|296881057|ref|ZP_06905000.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           NAP07]
 gi|296258636|gb|EFH05534.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           NAP08]
 gi|296427923|gb|EFH13827.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           NAP07]
          Length = 316

 Score = 41.9 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           Y VD+L  +I+       +       +GGEPLLQ +    ++   ++     A+ET+
Sbjct: 117 YTVDELVQVIKRD-SNNWRSNGGVTFSGGEPLLQHEFLHEVLLKCHEVNIHTAIETS 172


>gi|206975468|ref|ZP_03236381.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           H3081.97]
 gi|222097023|ref|YP_002531080.1| molybdenum cofactor biosynthesis protein a [Bacillus cereus Q1]
 gi|206746370|gb|EDZ57764.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           H3081.97]
 gi|221241081|gb|ACM13791.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus Q1]
          Length = 338

 Score = 41.9 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  F+          + D++  +       G ++ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ LNK  G E I + TNG++      D        + VS
Sbjct: 75  GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126


>gi|206969370|ref|ZP_03230325.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1134]
 gi|206736411|gb|EDZ53569.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1134]
          Length = 338

 Score = 41.9 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  F+          + D++  +       G ++ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ LNK  G E I + TNG++      D        + VS
Sbjct: 75  GEPLLRRGLPKLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126


>gi|160914926|ref|ZP_02077140.1| hypothetical protein EUBDOL_00934 [Eubacterium dolichum DSM 3991]
 gi|158433466|gb|EDP11755.1| hypothetical protein EUBDOL_00934 [Eubacterium dolichum DSM 3991]
          Length = 177

 Score = 41.9 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 19/86 (22%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
             GC           +  C+ C           G  Y VD L   I+E  +         
Sbjct: 28  TQGC-----------THHCQDCHNPQTW-DMQGGAEYAVDDLVQAIQEAQLQTG-----I 70

Query: 89  VLTGGEPLLQV--DVPLIQALNKRGF 112
             +GGEP LQ    +PL +A  ++G+
Sbjct: 71  TFSGGEPFLQAEKLIPLAKAAKEKGY 96


>gi|298682250|gb|ADI95314.1| PqqE [Pseudomonas putida]
          Length = 386

 Score = 41.9 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C          +G   + +Q   ++ E    G  +      +
Sbjct: 20  PLWLLAELTYRCPLQCPYCSNPLDF--AAQGQELSTEQWFKVMAEAREMGAAQ---IGFS 74

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    + G+   + T+G
Sbjct: 75  GGEPLVRQDLAQLIAEARRLGYYTNLITSG 104


>gi|239616931|ref|YP_002940253.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Kosmotoga olearia TBF 19.5.1]
 gi|239505762|gb|ACR79249.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Kosmotoga olearia TBF 19.5.1]
          Length = 217

 Score = 41.9 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 88  CVLTGGEPLL--QVDVPLIQALNKR--GFEIAVETNGTIE 123
            V+TGGEP L     +   + L KR  G  I V+TNG+  
Sbjct: 66  VVITGGEPTLHGHALLSFFKELKKRFPGKFIKVDTNGSNP 105


>gi|218690027|ref|YP_002398239.1| putative Radical SAM superfamily [Escherichia coli ED1a]
 gi|218427591|emb|CAR08492.2| hypothetical protein, putative Radical SAM superfamily [Escherichia
           coli ED1a]
          Length = 318

 Score = 41.9 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 9/77 (11%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQ 105
           C  C   ++  + + G   NV++  ++I +  + G    R  ++TGGEPLL  D + L  
Sbjct: 19  CPHC---YLDNKTSLG--LNVNEWKNVITKLMLKG---CRKLIITGGEPLLYKDFISLYT 70

Query: 106 ALNKRGFEIAVETNGTI 122
            ++++G +I++ TN ++
Sbjct: 71  FIHQQGIDISLFTNASL 87


>gi|295835543|ref|ZP_06822476.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Streptomyces sp. SPB74]
 gi|197699435|gb|EDY46368.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Streptomyces sp. SPB74]
          Length = 340

 Score = 41.9 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 38  CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  +++ L  +   + + TN  +   + I+    SP     + I G +E
Sbjct: 80  GGEPLMHPQIDEIVRQLVAKRKYVFLCTN-AMLLRKKIEKFTPSPYFAFAVHIDGLKE 136


>gi|148545656|ref|YP_001265758.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           putida F1]
 gi|166989889|sp|A5VXG4|PQQE_PSEP1 RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|148509714|gb|ABQ76574.1| coenzyme PQQ biosynthesis protein E [Pseudomonas putida F1]
          Length = 376

 Score = 41.9 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C          +G   + +Q   ++ E    G  +      +
Sbjct: 10  PLWLLAELTYRCPLQCPYCSNPLDF--AAQGQELSTEQWFKVMAEAREMGAAQ---IGFS 64

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    + G+   + T+G
Sbjct: 65  GGEPLVRQDLAQLIAEARRLGYYTNLITSG 94


>gi|320107306|ref|YP_004182896.1| coenzyme PQQ biosynthesis protein E [Terriglobus saanensis SP1PR4]
 gi|319925827|gb|ADV82902.1| coenzyme PQQ biosynthesis protein E [Terriglobus saanensis SP1PR4]
          Length = 364

 Score = 41.9 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R    C +C       +       +     D I+           +   TGGEPL + D+
Sbjct: 24  RCPLHCLYCSNPIEMQRAE-----DELSTKDWIQVFRQAALLGILHVHFTGGEPLARKDL 78

Query: 102 P-LIQALNKRGFEIAVETNG 120
           P LI+A  + G  + + T+G
Sbjct: 79  PELIRAAREAGLYVNMITSG 98


>gi|294340470|emb|CAZ88851.1| putative radical SAM enzyme, Cfr family, yfgB [Thiomonas sp. 3As]
          Length = 379

 Score = 41.9 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 45/131 (34%), Gaps = 30/131 (22%)

Query: 24  AVFC----RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-- 77
           AVF     R    N      Q   +  C+FC T   G QG        + LA L   +  
Sbjct: 97  AVFIPEAQR----NTLCVSSQAGCAVNCKFCST---GHQGFSRNLQTWEILAQLWHAEFT 149

Query: 78  ------WITGEKEGRYCVLTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETNGT 121
                    GE+     V+ G GEPL Q    L+ AL       G+      + V T+G 
Sbjct: 150 MRRELGLPGGERAISNVVMMGMGEPL-QNYSALVPALRTMLDDDGYGLSRRRVTVSTSGV 208

Query: 122 IEPPQGIDWIC 132
           +     +   C
Sbjct: 209 VPMIDRLSQDC 219


>gi|294496104|ref|YP_003542597.1| radical SAM protein [Methanohalophilus mahii DSM 5219]
 gi|292667103|gb|ADE36952.1| Radical SAM domain protein [Methanohalophilus mahii DSM 5219]
          Length = 351

 Score = 41.9 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR              G  +  +    I++    G       +L+
Sbjct: 21  CNLSC--------VHCRG-----ASTDEEAIGELDTFEAKTFIDQVASLG---SPILILS 64

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPL++ DV  L      +G  + + TNGT+
Sbjct: 65  GGEPLVRPDVYELAHYGTNKGLRVVLATNGTL 96


>gi|292489544|ref|YP_003532432.1| Coenzyme PQQ synthesis protein E [Erwinia amylovora CFBP1430]
 gi|292898240|ref|YP_003537609.1| coenzyme PQQ synthesis protein E [Erwinia amylovora ATCC 49946]
 gi|291198088|emb|CBJ45191.1| coenzyme PQQ synthesis protein E (pyrroloquinoline quinon
           biosynthesis protein E) [Erwinia amylovora ATCC 49946]
 gi|291554979|emb|CBA22988.1| Coenzyme PQQ synthesis protein E [Erwinia amylovora CFBP1430]
 gi|312173716|emb|CBX81970.1| Coenzyme PQQ synthesis protein E [Erwinia amylovora ATCC BAA-2158]
          Length = 382

 Score = 41.9 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF   +          Q  D+ ++    G  +     
Sbjct: 11  PLWLLAELTYRCPLQCPYCSNPLDFARQEKE----LTTAQWIDVFKQARAMGAVQ---IG 63

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +GGEPL++ D+P LI++    GF   + T+G
Sbjct: 64  FSGGEPLVRNDLPELIRSARDLGFYTNLITSG 95


>gi|296136235|ref|YP_003643477.1| radical SAM enzyme, Cfr family [Thiomonas intermedia K12]
 gi|295796357|gb|ADG31147.1| radical SAM enzyme, Cfr family [Thiomonas intermedia K12]
          Length = 379

 Score = 41.9 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 45/131 (34%), Gaps = 30/131 (22%)

Query: 24  AVFC----RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-- 77
           AVF     R    N      Q   +  C+FC T   G QG        + LA L   +  
Sbjct: 97  AVFIPEAQR----NTLCVSSQAGCAVNCKFCST---GHQGFSRNLQTWEILAQLWHAEFT 149

Query: 78  ------WITGEKEGRYCVLTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETNGT 121
                    GE+     V+ G GEPL Q    L+ AL       G+      + V T+G 
Sbjct: 150 MRRELGLPGGERAISNVVMMGMGEPL-QNYSALVPALRTMLDDDGYGLSRRRVTVSTSGV 208

Query: 122 IEPPQGIDWIC 132
           +     +   C
Sbjct: 209 VPMIDRLSQDC 219


>gi|229020682|ref|ZP_04177411.1| Radical SAM domain protein [Bacillus cereus AH1273]
 gi|229026898|ref|ZP_04183222.1| Radical SAM domain protein [Bacillus cereus AH1272]
 gi|228734401|gb|EEL85071.1| Radical SAM domain protein [Bacillus cereus AH1272]
 gi|228740610|gb|EEL90879.1| Radical SAM domain protein [Bacillus cereus AH1273]
          Length = 238

 Score = 41.9 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 93  GEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 3   GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 33


>gi|229035103|ref|ZP_04189049.1| Radical SAM domain protein [Bacillus cereus AH1271]
 gi|229176133|ref|ZP_04303626.1| Radical SAM domain protein [Bacillus cereus MM3]
 gi|228607368|gb|EEK64697.1| Radical SAM domain protein [Bacillus cereus MM3]
 gi|228728169|gb|EEL79199.1| Radical SAM domain protein [Bacillus cereus AH1271]
          Length = 238

 Score = 41.9 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 93  GEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 3   GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 33


>gi|217960969|ref|YP_002339537.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH187]
 gi|217063865|gb|ACJ78115.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH187]
          Length = 338

 Score = 41.9 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  F+          + D++  +       G ++ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGPDYSFLSND----KILSFDEIERITRIFVSLGVRKLR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ LNK  G E I + TNG++      D        + VS
Sbjct: 75  GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126


>gi|160875513|ref|YP_001554829.1| radical SAM domain-containing protein [Shewanella baltica OS195]
 gi|160861035|gb|ABX49569.1| Radical SAM domain protein [Shewanella baltica OS195]
          Length = 298

 Score = 41.9 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 17/105 (16%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCV 89
           NL +       S +C  CDT           +   Y V+++  ++  Q            
Sbjct: 72  NLNNKPRISWDSERCSQCDTCLAVCPKQASPKVTHYTVEEILGILHSQR----HFINGIT 127

Query: 90  LTGGEPLLQVDVPLIQALNK--------RGFEIAVETNGTIEPPQ 126
           ++GGE  LQ  +P I AL K              ++TNG++    
Sbjct: 128 VSGGEASLQ--LPFIIALFKGIKASESLSHLTCMLDTNGSLSLTG 170


>gi|53715771|ref|YP_101763.1| putative heme biosynthesis protein [Bacteroides fragilis YCH46]
 gi|60683702|ref|YP_213846.1| putative radical SAM-family protein [Bacteroides fragilis NCTC
           9343]
 gi|52218636|dbj|BAD51229.1| putative heme biosynthesis protein [Bacteroides fragilis YCH46]
 gi|60495136|emb|CAH09957.1| putative radical SAM-family protein [Bacteroides fragilis NCTC
           9343]
          Length = 361

 Score = 41.9 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 14/99 (14%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C+ C +D    + ++           +++             ++T
Sbjct: 43  CNL-----------ACKHCGSD--CRKMSEQKDMPAADFLQVVDSITPHVNPNEVNIIIT 89

Query: 92  GGEPLLQVDVPLIQ-ALNKRGFEIAVETNGTIEPPQGID 129
           GGEPL++ D+  +  AL ++G+   + +NG     + +D
Sbjct: 90  GGEPLMRDDLEEVGMALYRKGYPWGIVSNGLYLTRERLD 128


>gi|26987118|ref|NP_742543.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           putida KT2440]
 gi|32363295|sp|Q88QV8|PQQE_PSEPK RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|24981747|gb|AAN66007.1|AE016229_8 coenzyme PQQ synthesis protein E [Pseudomonas putida KT2440]
          Length = 376

 Score = 41.9 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C          +G   + +Q   ++ E    G  +      +
Sbjct: 10  PLWLLAELTYRCPLQCPYCSNPLDF--AAQGQELSTEQWFKVMAEAREMGAAQ---IGFS 64

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    + G+   + T+G
Sbjct: 65  GGEPLVRQDLAQLIAEARRLGYYTNLITSG 94


>gi|331086093|ref|ZP_08335176.1| hypothetical protein HMPREF0987_01479 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407016|gb|EGG86521.1| hypothetical protein HMPREF0987_01479 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 303

 Score = 41.9 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIAVET 118
           G  Y + +L   IE+  +  E+ G    L+GGE + Q       L++ L ++G+ +A++T
Sbjct: 103 GKEYTISELMKEIEKDCMFYEESGGGVTLSGGEVMAQDMDYIEQLLKKLKRKGYNVAIDT 162

Query: 119 NG 120
            G
Sbjct: 163 CG 164


>gi|294055622|ref|YP_003549280.1| pyruvate formate-lyase activating enzyme [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614955|gb|ADE55110.1| pyruvate formate-lyase activating enzyme [Coraliomargarita
           akajimensis DSM 45221]
          Length = 262

 Score = 41.9 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 28/127 (22%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
            +GC L           +C +C   D          G + + + + + + +     +  G
Sbjct: 47  LNGCPL-----------RCMYCHNPD----AQGKPHGEQKSPETVIEDVIKYRNFIKDGG 91

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWICVSPKA 137
               ++GGEPL+Q        +   + G    ++T+G      + E     D + +  K+
Sbjct: 92  --LTISGGEPLMQPQFVEETFKLAKEAGLHTTLDTSGFLGHKASDELLDNTDLVLLDIKS 149

Query: 138 GCDLKIK 144
              L  K
Sbjct: 150 WSPLTYK 156


>gi|291521582|emb|CBK79875.1| Predicted Fe-S oxidoreductases [Coprococcus catus GD/7]
          Length = 292

 Score = 41.9 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 28/109 (25%)

Query: 28  RFSG--------CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           RF          CNL            C FC T             +VD+ A +  +   
Sbjct: 5   RFQKIYIEIINRCNL-----------SCSFCPT-----SDRPARMMSVDEFAKIAAQVTP 48

Query: 80  TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127
             +    +     GEPL+   +  ++   ++ G ++ + TN  + P + 
Sbjct: 49  FTDYICLHVK---GEPLMHPWLGDILAIAHQNGLKVNLTTNAVLLPEKH 94


>gi|289167177|ref|YP_003445444.1| pyruvate-formate lyase activating enzyme [Streptococcus mitis B6]
 gi|288906742|emb|CBJ21576.1| pyruvate-formate lyase activating enzyme [Streptococcus mitis B6]
          Length = 264

 Score = 41.9 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 21/99 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC++           +C++C   DT +         R   D L + +  +   G
Sbjct: 33  VF--LQGCHM-----------RCQYCHNPDT-WAMESNKSRERTVDDVLTEALRYRGFWG 78

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
            K G    ++GGE LLQ+D  + L     + G    ++T
Sbjct: 79  NKGG--ITVSGGEALLQIDFLIALFTKAKEHGIHCTLDT 115


>gi|253566416|ref|ZP_04843869.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265767276|ref|ZP_06094942.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|251944588|gb|EES85063.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263252581|gb|EEZ24093.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301165287|emb|CBW24858.1| putative radical SAM-family protein [Bacteroides fragilis 638R]
          Length = 361

 Score = 41.9 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 14/99 (14%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C+ C +D    + ++           +++             ++T
Sbjct: 43  CNL-----------ACKHCGSD--CRKMSEQKDMPAADFLQVVDSITPHVNPNEVNIIIT 89

Query: 92  GGEPLLQVDVPLIQ-ALNKRGFEIAVETNGTIEPPQGID 129
           GGEPL++ D+  +  AL ++G+   + +NG     + +D
Sbjct: 90  GGEPLMRDDLEEVGMALYRKGYPWGIVSNGLYLTRERLD 128


>gi|184158118|ref|YP_001846457.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
           baumannii ACICU]
 gi|294841773|ref|ZP_06786456.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
           sp. 6014059]
 gi|226704987|sp|B2I0I5|PQQE_ACIBC RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|183209712|gb|ACC57110.1| predicted Fe-S oxidoreductase [Acinetobacter baumannii ACICU]
 gi|323518059|gb|ADX92440.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
           baumannii TCDC-AB0715]
          Length = 384

 Score = 41.9 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 20/174 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    D+   +          +  D+ ++    G  +  +  
Sbjct: 8   PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFDVFDQARQMGAVQLGF-- 61

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140
            +GGEPL+ Q    L+   ++ GF   + T+G        +     G+D I +S +A   
Sbjct: 62  -SGGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTEQRISHLKQAGLDHIQISFQASDP 120

Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
           +        K  F Q          +D+    L  +      +  +  I  C +
Sbjct: 121 VVNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIDKIIELCLE 173


>gi|150025123|ref|YP_001295949.1| hypothetical protein FP1044 [Flavobacterium psychrophilum JIP02/86]
 gi|149771664|emb|CAL43138.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
          Length = 463

 Score = 41.9 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 60/180 (33%), Gaps = 39/180 (21%)

Query: 31  GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G   D     C             C T +       G    ++++  + +   +
Sbjct: 80  GCPYDCGLCTDHEQHSCLTVIEVTDRCNLSCPTCYASSAPNYGRHRTLEEIEKMFD-VVV 138

Query: 80  TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKA 137
             E E     ++GGEP +  D   ++     +    + V TNG                 
Sbjct: 139 ANEGEPDVIQISGGEPTVHPDFFRILDIAKSKPIKHLMVNTNG----------------- 181

Query: 138 GCDLKIKGGQELKLVFPQVNVSP--ENYIGFD-FERFSLQPMDGPFLEENTNLAISYCFQ 194
                I+  +++K V       P  E Y+ FD F++  L+ + G  L E    AI +  Q
Sbjct: 182 -----IRIAKDIKFVEKLATYMPDFELYLQFDSFKKEVLEKLRGEDLTEVRKKAIDHLNQ 236


>gi|325662287|ref|ZP_08150902.1| hypothetical protein HMPREF0490_01640 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471539|gb|EGC74760.1| hypothetical protein HMPREF0490_01640 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 303

 Score = 41.9 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIAVET 118
           G  Y + +L   IE+  +  E+ G    L+GGE + Q       L++ L ++G+ +A++T
Sbjct: 103 GKEYTISELMKEIEKDCMFYEESGGGVTLSGGEVMAQDMDYIEQLLKKLKRKGYNVAIDT 162

Query: 119 NG 120
            G
Sbjct: 163 CG 164


>gi|261494073|ref|ZP_05990576.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496086|ref|ZP_05992496.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261308336|gb|EEY09629.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310239|gb|EEY11439.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 246

 Score = 41.9 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G    V++L   +     
Sbjct: 21  IRFILFLQGC-----------LMRCKYCHNRDT----WDLDGGKEITVEELMKEVTTYKH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
             +  G     +GGE +LQ++      +A    G    ++TNG
Sbjct: 66  FMKATGGGVTASGGEAVLQMEFVRDWFRACKAEGINTCLDTNG 108


>gi|228988685|ref|ZP_04148771.1| Radical SAM domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771136|gb|EEM19616.1| Radical SAM domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 238

 Score = 41.9 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 93  GEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 3   GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 33


>gi|228911295|ref|ZP_04075099.1| Radical SAM domain protein [Bacillus thuringiensis IBL 200]
 gi|229181703|ref|ZP_04309026.1| Radical SAM domain protein [Bacillus cereus 172560W]
 gi|229193708|ref|ZP_04320649.1| Radical SAM domain protein [Bacillus cereus ATCC 10876]
 gi|228589733|gb|EEK47611.1| Radical SAM domain protein [Bacillus cereus ATCC 10876]
 gi|228601736|gb|EEK59234.1| Radical SAM domain protein [Bacillus cereus 172560W]
 gi|228848313|gb|EEM93163.1| Radical SAM domain protein [Bacillus thuringiensis IBL 200]
          Length = 238

 Score = 41.9 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 93  GEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 3   GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 33


>gi|156933758|ref|YP_001437674.1| hypothetical protein ESA_01584 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532012|gb|ABU76838.1| hypothetical protein ESA_01584 [Cronobacter sakazakii ATCC BAA-894]
          Length = 302

 Score = 41.9 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           G   +V+ + D +        + G    L+GGEP +Q ++   L+Q   + G   AVE+
Sbjct: 104 GESRSVEAIMDTVLRDRPFYARSGGGITLSGGEPFMQPEMAKALLQRSREAGIHTAVES 162


>gi|254362790|ref|ZP_04978871.1| hypothetical protein
 gi|153094419|gb|EDN75267.1| [formate-C-acetyltransferase]-activating enzyme [Mannheimia
           haemolytica PHL213]
          Length = 246

 Score = 41.9 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G    V++L   +     
Sbjct: 21  IRFILFLQGC-----------LMRCKYCHNRDT----WDLDGGKEITVEELMKEVTTYKH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
             +  G     +GGE +LQ++      +A    G    ++TNG
Sbjct: 66  FMKATGGGVTASGGEAVLQMEFVRDWFRACKAEGINTCLDTNG 108


>gi|160903005|ref|YP_001568586.1| radical SAM domain-containing protein [Petrotoga mobilis SJ95]
 gi|160360649|gb|ABX32263.1| Radical SAM domain protein [Petrotoga mobilis SJ95]
          Length = 296

 Score = 41.9 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 24/114 (21%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDF-VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            GCNL            C +C   + VG       R     +   +E+     + E    
Sbjct: 10  GGCNL-----------SCSYC--YYQVGNLHYSPTRLKPSDVEQWVEKCMHLMKIES--I 54

Query: 89  VLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDW-------ICVS 134
             TGGEPLL+ D    ++   + G +  V TNGT+   +   +       +CVS
Sbjct: 55  TFTGGEPLLRRDFFEFVEIPIRYGIDTRVLTNGTLLTDKHASFFRDNNVEVCVS 108


>gi|297243355|ref|ZP_06927288.1| pyruvate formate-lyase 1 activating enzyme [Gardnerella vaginalis
           AMD]
 gi|296888602|gb|EFH27341.1| pyruvate formate-lyase 1 activating enzyme [Gardnerella vaginalis
           AMD]
          Length = 293

 Score = 41.9 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 28/135 (20%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G    +D +   ++   
Sbjct: 71  RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMIKKVDRYQ 113

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130
              +  G     +GGE ++Q      + +A  + G    ++T+G      T E  + ID 
Sbjct: 114 SLFKATGGGITFSGGESMMQPAFVSRVFRAAKEMGVHTCLDTSGFLNRNYTDEMIEDIDL 173

Query: 131 ICVSPKAGCDLKIKG 145
             +  K+G +   K 
Sbjct: 174 CLLDVKSGTEETYKK 188


>gi|294495235|ref|YP_003541728.1| radical SAM protein [Methanohalophilus mahii DSM 5219]
 gi|292666234|gb|ADE36083.1| Radical SAM domain protein [Methanohalophilus mahii DSM 5219]
          Length = 397

 Score = 41.9 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       +        D DF G   T+ G+  +D LA            +    + +
Sbjct: 50  CNLKCIHCYAQAD------DKDFEGELSTEEGKRLIDDLAA----------FKTPVILFS 93

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           GGEPL++ D+P L +    +G    + TNGT+
Sbjct: 94  GGEPLVRKDLPELAEYAVSKGLRAVISTNGTL 125


>gi|302522957|ref|ZP_07275299.1| radical SAM domain-containing protein [Streptomyces sp. SPB78]
 gi|318058271|ref|ZP_07976994.1| hypothetical protein SSA3_10023 [Streptomyces sp. SA3_actG]
 gi|318076933|ref|ZP_07984265.1| hypothetical protein SSA3_09465 [Streptomyces sp. SA3_actF]
 gi|302431852|gb|EFL03668.1| radical SAM domain-containing protein [Streptomyces sp. SPB78]
          Length = 340

 Score = 41.9 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 38  CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  +++ L  +   + + TN  +   + I+    SP     + I G +E
Sbjct: 80  GGEPLMHPQIDEIVRQLVAKRKYVFLCTN-AMLLRKKIEKFTPSPYFAFAVHIDGLKE 136


>gi|71906049|ref|YP_283636.1| radical SAM family protein [Dechloromonas aromatica RCB]
 gi|71845670|gb|AAZ45166.1| Radical SAM [Dechloromonas aromatica RCB]
          Length = 474

 Score = 41.9 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 20/106 (18%)

Query: 31  GCNLWSGREQDRLS--------------AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           GC    G   D +                +C  C   +      +    ++ ++  +++ 
Sbjct: 83  GCPYDCGLCPDHMQHSCLSVVEITEHCNLRCPVC---YAESGPERQTHRSLAEVEAMLDA 139

Query: 77  QWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNG 120
             +  E E     L+GGEP L  D   ++ A   R    + V TNG
Sbjct: 140 V-VANEGEPDVVQLSGGEPTLHPDFFAILDAAKARPIRHLMVNTNG 184


>gi|205352177|ref|YP_002225978.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207856361|ref|YP_002243012.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|16419481|gb|AAL19904.1| pyruvate formate lyase activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|205271958|emb|CAR36802.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|206708164|emb|CAR32457.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|261246186|emb|CBG23990.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|301157513|emb|CBW17003.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
          Length = 274

 Score = 41.9 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 58/177 (32%), Gaps = 36/177 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 55  FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEDLMKEVVTYRHFMNASG 99

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKAGCDL 141
                +GGE +LQ +      +A  K G    ++TNG        ID  + V+     DL
Sbjct: 100 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDL 159

Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
           K     E+     Q  V   N+   +F ++          ++N  + I Y    P W
Sbjct: 160 KQMN-DEI----HQNLVGVSNHRTLEFAQY--------LSKKNVKVWIRYVVV-PGW 202


>gi|147677019|ref|YP_001211234.1| Fe-S oxidoreductases [Pelotomaculum thermopropionicum SI]
 gi|146273116|dbj|BAF58865.1| predicted Fe-S oxidoreductases [Pelotomaculum thermopropionicum SI]
          Length = 463

 Score = 41.9 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 22/106 (20%)

Query: 31  GCNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           GC    G                  R + +C FC   F G  G      ++D + +    
Sbjct: 78  GCPFDCGLCPAHRQLTCCVLLEVTGRCNLKCPFC---FAG-AGNGDADPDLDTIRNWYRR 133

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
               G        L+GGEP L+ D+P L+      GF  I + TNG
Sbjct: 134 LLDAGG--PFNVQLSGGEPTLRDDLPELVALGRSMGFSYIQLNTNG 177


>gi|315611872|ref|ZP_07886791.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis
           ATCC 49296]
 gi|315316050|gb|EFU64083.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis
           ATCC 49296]
          Length = 264

 Score = 41.5 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 21/99 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC++           +C++C   DT +         R   D L + +  +   G
Sbjct: 33  VF--LQGCHM-----------RCQYCHNPDT-WAMETNKSRERTVDDVLTEALRYRGFWG 78

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           +K G    ++GGE LLQ+D  + L     ++G    ++T
Sbjct: 79  DKGG--ITVSGGEALLQIDFLIALFTKAKEKGIHCTLDT 115


>gi|229155743|ref|ZP_04283849.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC
           4342]
 gi|228627729|gb|EEK84450.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC
           4342]
          Length = 337

 Score = 41.5 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  F+  +         D++  L       G  + R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGADYAFLQEEC----LLTFDEIERLARLFISMGVNKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           GEPLL+ D+P LI+ L K  G + I + TNG
Sbjct: 75  GEPLLRKDLPKLIERLAKLEGIKDIGLTTNG 105


>gi|146304904|ref|YP_001192220.1| radical SAM domain-containing protein [Metallosphaera sedula DSM
           5348]
 gi|145703154|gb|ABP96296.1| Radical SAM domain protein [Metallosphaera sedula DSM 5348]
          Length = 343

 Score = 41.5 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 10/81 (12%)

Query: 47  CRFCDTD--FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102
           C +C       G        Y V +L D I E +           +TGG+PLL +D  V 
Sbjct: 43  CYYCPVSEGRFGKDSAYANEYRVKELQDFIYESYRMNALGAG---ITGGDPLLHLDRVVE 99

Query: 103 LIQALNK---RGFEIAVETNG 120
           LI  L     R + I + T G
Sbjct: 100 LITLLKDEFGRSYHIHLYTTG 120


>gi|301055055|ref|YP_003793266.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis CI]
 gi|300377224|gb|ADK06128.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus biovar
           anthracis str. CI]
          Length = 338

 Score = 41.5 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  +  +  +     + D++  +       G ++ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGPD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P LI+ LNK  G E I + TNG++      D        + VS
Sbjct: 75  GEPLLRRGLPQLIERLNKIDGVEDIGLTTNGSLLKKFASDLYKAGLSRVTVS 126


>gi|317052492|ref|YP_004113608.1| Radical SAM domain-containing protein [Desulfurispirillum indicum
           S5]
 gi|316947576|gb|ADU67052.1| Radical SAM domain protein [Desulfurispirillum indicum S5]
          Length = 352

 Score = 41.5 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 17/90 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR C +D       +   +++D  A  +E      E      VL+
Sbjct: 16  CNLSC--------IHCR-CSSD------MEKDLFHLDT-ARALELVDRIAEFCTPVFVLS 59

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           GGEPL++ D+  + +  + +GF + + TNG
Sbjct: 60  GGEPLMRDDLFEIARHADSKGFRVCIATNG 89


>gi|260598126|ref|YP_003210697.1| putative pyruvate formate-lyase 3-activating enzyme [Cronobacter
           turicensis z3032]
 gi|260217303|emb|CBA31273.1| Putative pyruvate formate-lyase 3-activating enzyme [Cronobacter
           turicensis z3032]
          Length = 305

 Score = 41.5 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           G   +V+ + + +        + G    L+GGEP +Q ++   L+Q   + G   AVE+
Sbjct: 107 GESRSVESIMETVLRDRPFYARSGGGITLSGGEPFMQPEMAKALLQRSREAGIHTAVES 165


>gi|239625860|ref|ZP_04668891.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520090|gb|EEQ59956.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 353

 Score = 41.5 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 14/104 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +CR+C    +        R  +  L ++                +TGGEPL++ D
Sbjct: 18  DRCNLRCRYC----MPNGVESLARSEILSLEEIEAIAICAASLGISRIKVTGGEPLVRRD 73

Query: 101 -VPLIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134
              L++ L    G E + + TNG +           GID I +S
Sbjct: 74  CCQLVKLLKSIPGIEKVTITTNGVLLDRYLEPLIEAGIDGINIS 117


>gi|229099885|ref|ZP_04230808.1| Radical SAM domain protein [Bacillus cereus Rock3-29]
 gi|229118948|ref|ZP_04248293.1| Radical SAM domain protein [Bacillus cereus Rock1-3]
 gi|228664473|gb|EEL19969.1| Radical SAM domain protein [Bacillus cereus Rock1-3]
 gi|228683500|gb|EEL37455.1| Radical SAM domain protein [Bacillus cereus Rock3-29]
          Length = 238

 Score = 41.5 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 93  GEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           GEPLL   +  L+   +++GF++ + TNGT+
Sbjct: 3   GEPLLHPKIDQLLDLSHEKGFKVNITTNGTL 33


>gi|261405912|ref|YP_003242153.1| pyruvate formate-lyase activating enzyme [Paenibacillus sp.
           Y412MC10]
 gi|261282375|gb|ACX64346.1| pyruvate formate-lyase activating enzyme [Paenibacillus sp.
           Y412MC10]
          Length = 241

 Score = 41.5 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 51/154 (33%), Gaps = 44/154 (28%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F T+ G G          RF     GC             +C++C   DT        
Sbjct: 10  ETFGTVDGPG---------IRFVLFMQGC-----------LLKCQYCHNPDT----WGLH 45

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-----GFEIA 115
           +G    VD +   IE         G    ++GGEP LQ   P +  L K           
Sbjct: 46  EGHEMTVDDVLREIEPYLSYYRSSGGGLTVSGGEPTLQ--YPFVTELFKEVKRRWNLHTT 103

Query: 116 VETNGTIEPP------QGIDWICVSPKAGCDLKI 143
           +++NG  EP       +  D + +  K   D K 
Sbjct: 104 LDSNGYNEPDKISELLEHTDLVLLDLKHINDEKH 137


>gi|75676452|ref|YP_318873.1| Fe-S oxidoreductase [Nitrobacter winogradskyi Nb-255]
 gi|74421322|gb|ABA05521.1| Fe-S oxidoreductase [Nitrobacter winogradskyi Nb-255]
          Length = 389

 Score = 41.5 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 22/119 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +  +  D  EE             +
Sbjct: 38  CNL-----------GCAGCGKIDY--PDAILNRRMSAQECWDAAEECG------APMVAI 78

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
            GGEPL+  ++  +++ L  R   +++ TN  +   + +D    SP     + + G +E
Sbjct: 79  PGGEPLIHKEIGEIVRGLVARKKFVSLCTN-ALLLEKKLDLFEPSPYLFFSVHLDGLRE 136


>gi|76802053|ref|YP_327061.1| molybdenum cofactor biosynthesis protein A [Natronomonas pharaonis
           DSM 2160]
 gi|76557918|emb|CAI49502.1| molybdenum cofactor biosynthesis protein A [Natronomonas pharaonis
           DSM 2160]
          Length = 326

 Score = 41.5 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 23/115 (20%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR +  C +C      DT   G         + D +   +E   +  E + +    TGGE
Sbjct: 19  DRCNFDCVYCHNEGLGDTR--GPMEPAEDEMSTDDVIRFLE---VAAEFDIQSAKFTGGE 73

Query: 95  PLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI------------CVSPKA 137
           P+L+ D+  I        E ++ TNGT  P +    +             +SPKA
Sbjct: 74  PMLREDLETIVRRTPDSIETSLTTNGTFLPDRATALVDAGLERVNVSQDALSPKA 128


>gi|300869794|ref|YP_003784665.1| molybdenum cofactor biosynthesis protein A [Brachyspira pilosicoli
           95/1000]
 gi|300687493|gb|ADK30164.1| molybdenum cofactor biosynthesis protein A [Brachyspira pilosicoli
           95/1000]
          Length = 265

 Score = 41.5 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 13/90 (14%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +C +C  +    + T     + +Q+ ++++E    G K+ R   LTG
Sbjct: 10  NYIRVSVTDRCNLRCVYCMPEEGIEKKTHNEILSYEQIYNVVKESAELGVKKVR---LTG 66

Query: 93  GEPL----LQVDVPLIQALNKRGFEIAVET 118
           GEPL    +   V +I+ L        +ET
Sbjct: 67  GEPLVRKNIDELVAMIRTLK------NIET 90


>gi|288799635|ref|ZP_06405094.1| pyruvate formate-lyase 1-activating enzyme [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288332883|gb|EFC71362.1| pyruvate formate-lyase 1-activating enzyme [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 242

 Score = 41.5 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 24/123 (19%)

Query: 1   MKLYSI--KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI 57
           M   ++   E F ++ G G        +F    GC L           +CR+C       
Sbjct: 1   MTKAAVHSVETFGSVDGPGIRFI----IF--LKGCKL-----------RCRYCHNPDTWN 43

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIA 115
             +K  R   + L   ++ +   G+K G    ++GGE LLQ+D  + L +   K G    
Sbjct: 44  PDSKDMRSADELLEQALKYRTYWGKKGG--ITVSGGEALLQMDFMIELFKKAKKLGIHTC 101

Query: 116 VET 118
           ++T
Sbjct: 102 IDT 104


>gi|224283335|ref|ZP_03646657.1| Pyruvate-formate lyase-activating enzyme [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313140486|ref|ZP_07802679.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313132996|gb|EFR50613.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 293

 Score = 41.5 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 30/135 (22%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G    +D +   ++   
Sbjct: 71  RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGQPVYLDAMIKKVDRYK 113

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG---TIEPPQGIDWICV 133
              +        +GGE ++Q      +  A  + G    ++T+G   T    + ID I +
Sbjct: 114 DLFKATHGGITFSGGESMMQPAFVSRVFHAAKEMGVHTCLDTSGFLNTNYTDEMIDDIDL 173

Query: 134 SPKAGCDLKIKGGQE 148
                C L +K G E
Sbjct: 174 -----CLLDVKSGDE 183


>gi|224372437|ref|YP_002606809.1| molybdenum cofactor biosynthesis protein A [Nautilia profundicola
           AmH]
 gi|254811545|sp|B9L851|MOAA_NAUPA RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|223589159|gb|ACM92895.1| molybdenum cofactor biosynthesis protein A [Nautilia profundicola
           AmH]
          Length = 318

 Score = 41.5 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 10/85 (11%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
            R + +C +C  +T F         RY  +++ + +      G  + R   LTGGEPLL+
Sbjct: 19  SRCNFRCLYCMPNTPFEWEPHENILRY--EEMFEFLRLAIDEGINKIR---LTGGEPLLR 73

Query: 99  VDVP-LIQALNK--RGFEIAVETNG 120
            D+   ++ L+      ++A+ TNG
Sbjct: 74  KDLDVFVKMLHDYRPDLDLALTTNG 98


>gi|149187459|ref|ZP_01865757.1| putative pyruvate formate-lyase activating enzyme [Vibrio shilonii
           AK1]
 gi|148838995|gb|EDL55934.1| putative pyruvate formate-lyase activating enzyme [Vibrio shilonii
           AK1]
          Length = 316

 Score = 41.5 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
           G    V+Q+   + +  +  +K G    L+GGE L Q +  + L +        + VETN
Sbjct: 119 GKEMTVEQVFAEVIKDKVYFDKSGGGITLSGGEALKQFEFCLALAKMCKANDVHVCVETN 178

Query: 120 GT 121
           G 
Sbjct: 179 GA 180


>gi|126652323|ref|ZP_01724499.1| molybdenum cofactor biosynthesis protein A [Bacillus sp. B14905]
 gi|126590898|gb|EAZ85011.1| molybdenum cofactor biosynthesis protein A [Bacillus sp. B14905]
          Length = 308

 Score = 41.5 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 8/73 (10%)

Query: 53  DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-R 110
           D+  +   K   +  D++  L++     G K+ R   +TGGEPLL+ D+  LI  +++  
Sbjct: 9   DYAFLPSDKILNF--DEIERLVKIFVSLGVKKVR---ITGGEPLLRRDLTELIARIHRLE 63

Query: 111 GFE-IAVETNGTI 122
           G E IA+ TNGT+
Sbjct: 64  GVEDIALTTNGTL 76


>gi|126697727|ref|YP_001086624.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile 630]
 gi|122974232|sp|Q18CP3|HPDA_CLOD6 RecName: Full=4-hydroxyphenylacetate decarboxylase activating
           enzyme; Short=Hpd-AE
 gi|115249164|emb|CAJ66975.1| putative 4-hydroxyphenylacetate decarboxylase,activating subunit
           HpdA; putative glycyl-radical activating family protein
           [Clostridium difficile]
          Length = 316

 Score = 41.5 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           Y VD+L  +I+       +       +GGEPLLQ +    ++   ++     A+ET+
Sbjct: 117 YTVDELVQVIKRD-SNNWRSNGGVTFSGGEPLLQHEFLHEVLLKCHEVNIHTAIETS 172


>gi|317471719|ref|ZP_07931060.1| glycyl-radical enzyme activating protein family [Anaerostipes sp.
           3_2_56FAA]
 gi|316900823|gb|EFV22796.1| glycyl-radical enzyme activating protein family [Anaerostipes sp.
           3_2_56FAA]
          Length = 304

 Score = 41.5 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 9/144 (6%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117
           ++G    V ++ +++ +     E+ G    L+GGE L Q +    L+ A  + G     E
Sbjct: 107 SEGETKTVQEVLNVVLQDKDFYEESGGGITLSGGEFLSQPEFAAELLLASKENGLHTCCE 166

Query: 118 TNGTIEPP------QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE-NYIGFDFER 170
           T G  +P       + +D+I    K     K K G  +    P  N+            R
Sbjct: 167 TTGFADPEIFNGVIKHLDYILFDMKHWNTAKHKEGTGVSNDLPLFNMKHAIQAEKEVLPR 226

Query: 171 FSLQPMDGPFLEENTNLAISYCFQ 194
             + P     LE+   LA +    
Sbjct: 227 IPVIPGFNDSLEDAARLADTLLKA 250


>gi|296166708|ref|ZP_06849133.1| radical SAM domain protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295897973|gb|EFG77554.1| radical SAM domain protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 516

 Score = 41.5 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 16/91 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   F            V  +   ++++           +L+
Sbjct: 123 CNL-----------RCPTC---FADSSPDLRDVVAVGDVLANVDQRLARENGRLDVVMLS 168

Query: 92  GGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
           GGEP L   +P L+  L+ R    I + TNG
Sbjct: 169 GGEPTLHPQLPELLAELSSRPITRILLNTNG 199


>gi|218781694|ref|YP_002433012.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218763078|gb|ACL05544.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 394

 Score = 41.5 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 8/92 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            +       R + +C  C   +     G        +Q  +LI++     E      + +
Sbjct: 40  PVVVWNATRRCNLKCVHC---YAHATAGKAPVEMTTEQGKELIKDL---AEFGSPVMLFS 93

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           GGEPL++ D+P L     + G    + TNGT+
Sbjct: 94  GGEPLMREDLPELADFAVQNGMRAVISTNGTL 125


>gi|219849365|ref|YP_002463798.1| molybdenum cofactor biosynthesis protein A [Chloroflexus aggregans
           DSM 9485]
 gi|219543624|gb|ACL25362.1| molybdenum cofactor biosynthesis protein A [Chloroflexus aggregans
           DSM 9485]
          Length = 353

 Score = 41.5 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 55/140 (39%), Gaps = 26/140 (18%)

Query: 41  DRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-Q 98
           DR + +C +C    VG+Q   +      D+L  +I      G ++ R   LTGGEP L  
Sbjct: 46  DRCNMRCVYC-MPAVGMQFAPRPELLTNDELLLVISAAARAGFRKLR---LTGGEPTLRH 101

Query: 99  VDVPLIQALNK-RGFE-IAVETN--------------GTIEPPQGIDWICVSPKAGCDLK 142
             V L++ L +  G E IA+ TN              G       ID   + P     + 
Sbjct: 102 DLVNLVRELKRIPGIEHIAMTTNALRLRKLAQSLREAGLDRVNISID--TLDP-VKFRMM 158

Query: 143 IKGGQELKLVFPQVNVSPEN 162
            +GG  L  V+  +  +   
Sbjct: 159 TRGGN-LDEVWAGIEAADAA 177


>gi|77917841|ref|YP_355656.1| Fe-S oxidoreductase [Pelobacter carbinolicus DSM 2380]
 gi|77543924|gb|ABA87486.1| conserved hypothetical Fe-S oxidoreductase [Pelobacter carbinolicus
           DSM 2380]
          Length = 459

 Score = 41.5 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 14/103 (13%)

Query: 31  GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G   +     C             C   F            ++ +   ++    
Sbjct: 69  GCPYDCGLCSNHGQHTCSALLEITERCNMACPVCFADSGKNAAADPTLETIDGWLQAVGR 128

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
               E     L+GGEP ++ D+P +I+ + +RGF  + + TNG
Sbjct: 129 ASGFEI-VIQLSGGEPTVREDLPEIIRRVRQRGFGFVQINTNG 170


>gi|75907442|ref|YP_321738.1| radical SAM family protein [Anabaena variabilis ATCC 29413]
 gi|75701167|gb|ABA20843.1| Radical SAM [Anabaena variabilis ATCC 29413]
          Length = 338

 Score = 41.5 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 28/122 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA--DLIEEQWITG--EKEGRY 87
           CNL            C  C           G   +  ++   +L  EQ      E     
Sbjct: 38  CNL-----------ACSGC-----------GKIQHPTEILKQNLTPEQCFAAVDECGAPV 75

Query: 88  CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
             + GGEPLL   +  +++ L +R   + + TNG +   + +D    SP     + + G 
Sbjct: 76  VSIPGGEPLLHPQIDEIVRGLVERKKYVYLCTNG-LLLEKSLDKFQPSPYLTFSVHLDGL 134

Query: 147 QE 148
           +E
Sbjct: 135 RE 136


>gi|30248346|ref|NP_840416.1| MoaA/nifB/pqqE family protein [Nitrosomonas europaea ATCC 19718]
 gi|30138232|emb|CAD84240.1| MoaA / nifB / pqqE family [Nitrosomonas europaea ATCC 19718]
          Length = 387

 Score = 41.5 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C          + T   R +VD+    ++E             + 
Sbjct: 38  CNLAC--------AGCG----KIDYPEETLRRRLSVDECLHAVDECG------APVVSIA 79

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+  ++P ++Q + +R   + + TN  +     +D    SP     + + G +E
Sbjct: 80  GGEPLIHKEMPQIVQGIIQRKKFVYLCTN-ALLLDTRMDDYQPSPYLTFSIHLDGNRE 136


>gi|85860740|ref|YP_462942.1| molybdenum cofactor biosynthesis protein A [Syntrophus
           aciditrophicus SB]
 gi|85723831|gb|ABC78774.1| molybdenum cofactor biosynthesis protein A [Syntrophus
           aciditrophicus SB]
          Length = 345

 Score = 41.5 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +CR+C     GI+   G    V  L        +  +   R   LTG
Sbjct: 29  NYLRISVTDRCNLRCRYC-MPEEGIESKLGHE-GVLSLEAFARVVRLAAQVGIRKVRLTG 86

Query: 93  GEPLLQVDVP-LIQALNKRGF--EIAVETNGTIEPP 125
           GEPL++ ++P LI+ +       +IA+ TNG +  P
Sbjct: 87  GEPLVRRNIPQLIRYIADVPQIDDIALTTNGILFAP 122


>gi|15678315|ref|NP_275430.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621339|gb|AAB84793.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 237

 Score = 41.5 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 18/88 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           F GC             +CR C  +        G      +L D+I +     E      
Sbjct: 61  FQGCP-----------IRCRGC-LNPEFHDEDGGHLIETARLVDMIRDLRDEIEG----V 104

Query: 89  VLTGGEPLLQV--DVPLIQALNKRGFEI 114
             TGGEPL Q    V L  A+   G  +
Sbjct: 105 TFTGGEPLAQAMELVKLAGAVKSMGLTV 132


>gi|327399325|ref|YP_004340194.1| Radical SAM domain-containing protein [Hippea maritima DSM 10411]
 gi|327181954|gb|AEA34135.1| Radical SAM domain protein [Hippea maritima DSM 10411]
          Length = 319

 Score = 41.5 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 17/134 (12%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDV- 101
           S +C +C+         +   +   +L +   +  I    +  +   +G GEP L  D+ 
Sbjct: 28  SYRCIYCEVGKTTDLSIERKSFFEVELIEKEFKDNIGKLGKIDFVTFSGSGEPTLNKDIG 87

Query: 102 PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE 161
            LI  +   G+  AV TNG++   + +              +       +V P ++ + E
Sbjct: 88  RLIDFVKGFGYRTAVLTNGSLLWREDV-----------KRDLLRAD---IVIPSLDAADE 133

Query: 162 N-YIGFDFERFSLQ 174
           + +   +    SL 
Sbjct: 134 DSFKKINRPHPSLS 147


>gi|309774977|ref|ZP_07669994.1| putative pyruvate formate-lyase-activating enzyme
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917254|gb|EFP62977.1| putative pyruvate formate-lyase-activating enzyme
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 301

 Score = 41.5 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 47/149 (31%), Gaps = 49/149 (32%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLS--------------AQCRFC-----DTDFVGIQGTKG 62
           R  VF    GCNL      +                  +C+ C     DT ++       
Sbjct: 21  RSTVF--LIGCNLRCVWCSNPELMLPGDKLLHFSSLCRKCQSCVRAYPDTVYMQDGELHM 78

Query: 63  GR------------------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
            +                         +   L + + +  I  E+       +GGEPLLQ
Sbjct: 79  HKTAQLHSCELEEICPYDALEHTGMQVDPVTLVEQLLKDRIFYEESAGGVTFSGGEPLLQ 138

Query: 99  VDVPLIQA---LNKRGFEIAVETNGTIEP 124
            +  L  A   L ++G  + V+T G +E 
Sbjct: 139 AE-ALYDALYLLKQKGISVCVDTAGDVEW 166


>gi|228900763|ref|ZP_04064979.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           IBL 4222]
 gi|228858863|gb|EEN03307.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           IBL 4222]
          Length = 333

 Score = 41.5 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  +Q         D++  L       G  + R   LTG
Sbjct: 18  DRCNFRCTYCMPAEVFGPD--YAFLQEEL--LLTFDEIERLARLFISLGVNKIR---LTG 70

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           GEPLL+ D+P LI  L K  G + I + TNG
Sbjct: 71  GEPLLRKDLPMLIARLAKLEGLKDIGLTTNG 101


>gi|228965137|ref|ZP_04126233.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228794570|gb|EEM42080.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 333

 Score = 41.5 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  +Q         D++  L       G  + R   LTG
Sbjct: 18  DRCNFRCTYCMPAEVFGPD--YAFLQEEL--LLTFDEIERLARLFISLGVNKIR---LTG 70

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           GEPLL+ D+P LI  L K  G + I + TNG
Sbjct: 71  GEPLLRKDLPMLIARLAKLEGLKDIGLTTNG 101


>gi|228985250|ref|ZP_04145415.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774545|gb|EEM22946.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 337

 Score = 41.5 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 14/89 (15%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C        D+  +Q         D++  L       G  + R   LTGGE
Sbjct: 22  DRCNFRCTYCMPAEVFGADYAFLQEEF--LLTFDEIERLARLFISMGVNKIR---LTGGE 76

Query: 95  PLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           PLL+ D+P LI+ L K  G + I + TNG
Sbjct: 77  PLLRKDLPKLIERLAKIEGIKDIGLTTNG 105


>gi|255305100|ref|ZP_05349272.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile ATCC 43255]
          Length = 316

 Score = 41.5 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           Y VD+L  +I+       +       +GGEPLLQ +    ++   ++     A+ET+
Sbjct: 117 YTVDELVQVIKRD-SNNWRSNGGVTFSGGEPLLQHEFLHEVLLKCHEVNIHTAIETS 172


>gi|156935145|ref|YP_001439061.1| pyrroloquinoline quinone biosynthesis protein PqqE [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156533399|gb|ABU78225.1| hypothetical protein ESA_02996 [Cronobacter sakazakii ATCC BAA-894]
          Length = 378

 Score = 41.5 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF   +         +Q  D+  +    G  +  +  
Sbjct: 10  PLWLLAELTYRCPLQCPYCSNPLDFAAQE----NELTTEQWIDVFRQARAMGAVQLGF-- 63

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +GGEPL++ D+P LI A    GF   + T+G
Sbjct: 64  -SGGEPLVRKDLPELIAAARGMGFYTNLITSG 94


>gi|148225025|ref|NP_001086201.1| molybdenum cofactor synthesis 1 [Xenopus laevis]
 gi|49258030|gb|AAH74319.1| MGC84142 protein [Xenopus laevis]
          Length = 389

 Score = 41.5 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 21/134 (15%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGT-KGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           N       ++ + +C++C     G++ T K       ++  L +     G  + R   LT
Sbjct: 74  NYLRISVTEKCNLRCQYC-MPEEGVKLTPKSELLTTQEIVTLAKLFVREGVDKIR---LT 129

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG---TIEPP----QGIDWICVS------P 135
           GGEPL++ D V ++  L K  G + IA+ TNG   T + P     G+D + +S      P
Sbjct: 130 GGEPLIRPDVVDIVAQLRKLEGLKTIALTTNGINLTRQLPKLKDAGLDVLNISLDTLVPP 189

Query: 136 KAGCDLKIKGGQEL 149
           K    ++ KG  ++
Sbjct: 190 KFEFIVRRKGFHKV 203


>gi|75764213|ref|ZP_00743774.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218897135|ref|YP_002445546.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus G9842]
 gi|74488299|gb|EAO51954.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218543554|gb|ACK95948.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus G9842]
          Length = 337

 Score = 41.5 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  +Q         D++  L       G  + R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPD--YAFLQEEL--LLTFDEIERLARLFISLGVNKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           GEPLL+ D+P LI  L K  G + I + TNG
Sbjct: 75  GEPLLRKDLPMLIARLAKLEGLKDIGLTTNG 105


>gi|256395785|ref|YP_003117349.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Catenulispora acidiphila DSM 44928]
 gi|256362011|gb|ACU75508.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Catenulispora acidiphila DSM 44928]
          Length = 334

 Score = 41.5 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 20/99 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C                R  V+Q    + E             + 
Sbjct: 38  CNLAC--------AGCG----KIQHPADVLKKRMPVEQALAAMRECG------APMVSIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGID 129
           GGEPL+   +  L+  L K    + + TN  +  P+ +D
Sbjct: 80  GGEPLMHPQIGELVDELVKMKRYVFLCTN-ALLIPKKLD 117


>gi|237813219|ref|YP_002897670.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei MSHR346]
 gi|237506155|gb|ACQ98473.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei MSHR346]
          Length = 377

 Score = 41.5 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 23/113 (20%)

Query: 41  DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
           DR + +C +C                     ++++  L       G ++ R   +TGGEP
Sbjct: 52  DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 107

Query: 96  LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           LL+ ++  LI+ L        R  +I + TNG++           G+  + VS
Sbjct: 108 LLRKNLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVS 160


>gi|167903657|ref|ZP_02490862.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei NCTC 13177]
          Length = 370

 Score = 41.5 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 23/113 (20%)

Query: 41  DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
           DR + +C +C                     ++++  L       G ++ R   +TGGEP
Sbjct: 45  DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 100

Query: 96  LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           LL+ ++  LI+ L        R  +I + TNG++           G+  + VS
Sbjct: 101 LLRKNLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVS 153


>gi|162446916|ref|YP_001620048.1| pyruvate formate lyase activating enzyme [Acholeplasma laidlawii
           PG-8A]
 gi|161985023|gb|ABX80672.1| pyruvate formate lyase activating enzyme [Acholeplasma laidlawii
           PG-8A]
          Length = 253

 Score = 41.5 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 23/100 (23%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
             GC L           +C+FC   DT              V+++ +  +        + 
Sbjct: 33  LQGCPL-----------RCKFCHNRDT----WGTEDNKLMTVEEILN--DYNKYRAFYKK 75

Query: 86  RYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN-GTI 122
               ++GGE  LQ+     L +    R     ++T+ GT 
Sbjct: 76  GGLTVSGGEATLQIGFLTALFKEAKNRNIHTCLDTSAGTF 115


>gi|167720586|ref|ZP_02403822.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei DM98]
 gi|167739576|ref|ZP_02412350.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 14]
 gi|167816780|ref|ZP_02448460.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 91]
 gi|167825186|ref|ZP_02456657.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 9]
 gi|167846683|ref|ZP_02472191.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei B7210]
 gi|167895272|ref|ZP_02482674.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 7894]
 gi|167911906|ref|ZP_02498997.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 112]
 gi|167919900|ref|ZP_02506991.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei BCC215]
 gi|254191222|ref|ZP_04897726.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254195839|ref|ZP_04902265.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei S13]
 gi|157938894|gb|EDO94564.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169652584|gb|EDS85277.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei S13]
          Length = 370

 Score = 41.5 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 23/113 (20%)

Query: 41  DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
           DR + +C +C                     ++++  L       G ++ R   +TGGEP
Sbjct: 45  DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 100

Query: 96  LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           LL+ ++  LI+ L        R  +I + TNG++           G+  + VS
Sbjct: 101 LLRKNLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVS 153


>gi|134277196|ref|ZP_01763911.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 305]
 gi|134250846|gb|EBA50925.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 305]
          Length = 377

 Score = 41.5 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 23/113 (20%)

Query: 41  DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
           DR + +C +C                     ++++  L       G ++ R   +TGGEP
Sbjct: 52  DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 107

Query: 96  LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           LL+ ++  LI+ L        R  +I + TNG++           G+  + VS
Sbjct: 108 LLRKNLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVS 160


>gi|126454258|ref|YP_001067111.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 1106a]
 gi|217420454|ref|ZP_03451959.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 576]
 gi|226197916|ref|ZP_03793490.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei Pakistan 9]
 gi|254259569|ref|ZP_04950623.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 1710a]
 gi|126227900|gb|ABN91440.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 1106a]
 gi|217395866|gb|EEC35883.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 576]
 gi|225930104|gb|EEH26117.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei Pakistan 9]
 gi|254218258|gb|EET07642.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 1710a]
          Length = 377

 Score = 41.5 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 23/113 (20%)

Query: 41  DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
           DR + +C +C                     ++++  L       G ++ R   +TGGEP
Sbjct: 52  DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 107

Query: 96  LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           LL+ ++  LI+ L        R  +I + TNG++           G+  + VS
Sbjct: 108 LLRKNLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVS 160


>gi|126441374|ref|YP_001059824.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 668]
 gi|126220867|gb|ABN84373.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 668]
          Length = 377

 Score = 41.5 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 23/113 (20%)

Query: 41  DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
           DR + +C +C                     ++++  L       G ++ R   +TGGEP
Sbjct: 52  DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 107

Query: 96  LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           LL+ ++  LI+ L        R  +I + TNG++           G+  + VS
Sbjct: 108 LLRKNLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVS 160


>gi|121598421|ref|YP_993796.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
           SAVP1]
 gi|124385812|ref|YP_001028740.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
           NCTC 10229]
 gi|126451180|ref|YP_001081354.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
           NCTC 10247]
 gi|242314341|ref|ZP_04813357.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 1106b]
 gi|251767263|ref|ZP_02266560.2| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
           PRL-20]
 gi|254178129|ref|ZP_04884784.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
           ATCC 10399]
 gi|254357683|ref|ZP_04973956.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
           2002721280]
 gi|121227231|gb|ABM49749.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
           SAVP1]
 gi|124293832|gb|ABN03101.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
           NCTC 10229]
 gi|126244050|gb|ABO07143.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
           NCTC 10247]
 gi|148026810|gb|EDK84831.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
           2002721280]
 gi|160699168|gb|EDP89138.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
           ATCC 10399]
 gi|242137580|gb|EES23982.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 1106b]
 gi|243063305|gb|EES45491.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
           PRL-20]
          Length = 363

 Score = 41.5 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 23/113 (20%)

Query: 41  DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
           DR + +C +C                     ++++  L       G ++ R   +TGGEP
Sbjct: 38  DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 93

Query: 96  LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           LL+ ++  LI+ L        R  +I + TNG++           G+  + VS
Sbjct: 94  LLRKNLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVS 146


>gi|76809653|ref|YP_334300.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 1710b]
 gi|76579106|gb|ABA48581.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 1710b]
          Length = 370

 Score = 41.5 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 23/113 (20%)

Query: 41  DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
           DR + +C +C                     ++++  L       G ++ R   +TGGEP
Sbjct: 45  DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 100

Query: 96  LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           LL+ ++  LI+ L        R  +I + TNG++           G+  + VS
Sbjct: 101 LLRKNLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVS 153


>gi|84496509|ref|ZP_00995363.1| molybdenum cofactor biosynthesis protein A [Janibacter sp.
           HTCC2649]
 gi|84383277|gb|EAP99158.1| molybdenum cofactor biosynthesis protein A [Janibacter sp.
           HTCC2649]
          Length = 336

 Score = 41.5 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 55/138 (39%), Gaps = 22/138 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99
           DR + +CR+C          K      D+L  L+      G ++ R   LTGGEPLL+  
Sbjct: 27  DRCNLRCRYCMPAEGLPWLAKPEMLTDDELIRLVSIFVALGVEQVR---LTGGEPLLRRS 83

Query: 100 DVPL---IQALNKRGFEIAVETNG-TIE------PPQGIDWI-----CVSPKAGCDLKIK 144
              L   I AL  R   IA+ TNG  ++         G+D +      V PK   DL   
Sbjct: 84  LTDLVGRIAALTPRP-RIAMTTNGIGLDRLAGPLAAAGLDRVNISLDTVDPKEFADL--T 140

Query: 145 GGQELKLVFPQVNVSPEN 162
               LK V   +  + E 
Sbjct: 141 RRDRLKDVEAGLEAAREA 158


>gi|53720059|ref|YP_109045.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei K96243]
 gi|53725728|ref|YP_102316.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
           ATCC 23344]
 gi|254199210|ref|ZP_04905576.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
           FMH]
 gi|254205515|ref|ZP_04911867.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
           JHU]
 gi|254296849|ref|ZP_04964302.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 406e]
 gi|52210473|emb|CAH36456.1| putative molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei K96243]
 gi|52429151|gb|AAU49744.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
           ATCC 23344]
 gi|147748806|gb|EDK55880.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
           FMH]
 gi|147752958|gb|EDK60023.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
           JHU]
 gi|157807170|gb|EDO84340.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 406e]
          Length = 360

 Score = 41.5 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 23/113 (20%)

Query: 41  DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
           DR + +C +C                     ++++  L       G ++ R   +TGGEP
Sbjct: 35  DRCNFRCVYC-MPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIR---ITGGEP 90

Query: 96  LLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           LL+ ++  LI+ L        R  +I + TNG++           G+  + VS
Sbjct: 91  LLRKNLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVS 143


>gi|327314094|ref|YP_004329531.1| pyruvate formate-lyase 1-activating enzyme [Prevotella denticola
           F0289]
 gi|326945639|gb|AEA21524.1| pyruvate formate-lyase 1-activating enzyme [Prevotella denticola
           F0289]
          Length = 246

 Score = 41.5 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 34/127 (26%)

Query: 3   LYSI--KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVG 56
           +  +   E F ++ G G        +F    GC           + +CR+C   DT    
Sbjct: 7   MLRVHSVESFGSVDGPGIRFV----IF--LKGC-----------AMRCRYCHNPDT---- 45

Query: 57  IQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR---GF 112
                G   +VD  L+  +  Q   GEK G    ++GGE LLQ   PL +  +K    G 
Sbjct: 46  WDRAGGILRSVDDVLSQALRYQSYWGEKGG--ITVSGGEALLQ-LRPLTELFHKAKSLGV 102

Query: 113 EIAVETN 119
              ++T+
Sbjct: 103 NTCLDTS 109


>gi|319762446|ref|YP_004126383.1| molybdenum cofactor biosynthesis protein a [Alicycliphilus
           denitrificans BC]
 gi|330825703|ref|YP_004389006.1| molybdenum cofactor biosynthesis protein A [Alicycliphilus
           denitrificans K601]
 gi|317117007|gb|ADU99495.1| molybdenum cofactor biosynthesis protein A [Alicycliphilus
           denitrificans BC]
 gi|329311075|gb|AEB85490.1| molybdenum cofactor biosynthesis protein A [Alicycliphilus
           denitrificans K601]
          Length = 389

 Score = 41.5 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 19/150 (12%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C    V  +  +   ++ +    ++     +          LTGGEPLL+ 
Sbjct: 58  DRCNFRCSYCMPKEVFDKHYRYLPHSDLLSFEEITRLARLFMAHGVHKIRLTGGEPLLRK 117

Query: 100 DVPLI-QALNKRGFE--------IAVETNGT-------IEPPQGIDWICVSPKAGCDLKI 143
           D+ L+ + L   G          + + TNG+            G+  + VS  +  D   
Sbjct: 118 DLELLVEQL--AGLRTTEGRVPDLTLTTNGSLLARKARALKAAGLQRVTVSLDSLDDAVF 175

Query: 144 KGGQELKLVFPQVNVSPENYIGFDFERFSL 173
           +   ++     +V    E      F    +
Sbjct: 176 RRMNDVDFPVAEVLAGIEAAQAAGFGTIKV 205


>gi|293364736|ref|ZP_06611453.1| pyruvate formate-lyase activating enzyme [Streptococcus oralis ATCC
           35037]
 gi|306830171|ref|ZP_07463355.1| pyruvate formate-lyase activating enzyme [Streptococcus mitis ATCC
           6249]
 gi|307702983|ref|ZP_07639930.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus oralis
           ATCC 35037]
 gi|322375831|ref|ZP_08050342.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sp. C300]
 gi|331265653|ref|YP_004325283.1| pyruvate-formate lyase activating enzyme [Streptococcus oralis Uo5]
 gi|291316186|gb|EFE56622.1| pyruvate formate-lyase activating enzyme [Streptococcus oralis ATCC
           35037]
 gi|304427697|gb|EFM30793.1| pyruvate formate-lyase activating enzyme [Streptococcus mitis ATCC
           6249]
 gi|307623376|gb|EFO02366.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus oralis
           ATCC 35037]
 gi|321279099|gb|EFX56141.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sp. C300]
 gi|326682325|emb|CBY99942.1| pyruvate-formate lyase activating enzyme [Streptococcus oralis Uo5]
          Length = 264

 Score = 41.5 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 21/99 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC++           +C++C   DT +         R   D L + +  +   G
Sbjct: 33  VF--LQGCHM-----------RCQYCHNPDT-WAMETNKSRERTVDDVLTEALRYRGFWG 78

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           +K G    ++GGE LLQ+D  + L     ++G    ++T
Sbjct: 79  DKGG--ITVSGGEALLQIDFLIALFTKAKEKGIHCTLDT 115


>gi|238059634|ref|ZP_04604343.1| radical activating enzyme [Micromonospora sp. ATCC 39149]
 gi|237881445|gb|EEP70273.1| radical activating enzyme [Micromonospora sp. ATCC 39149]
          Length = 214

 Score = 41.5 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 27/100 (27%), Gaps = 28/100 (28%)

Query: 17  GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADL 73
           G   G         GC           +  C  C   DT F            VD + D 
Sbjct: 18  GRRVGVW-----LQGC-----------AIGCPGCVSQDTWFA----EPRHDTEVDDVLDR 57

Query: 74  IEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRG 111
           +      G        +TGGEP  Q      L+  L   G
Sbjct: 58  VAGLDPAGITG---VTVTGGEPSEQPEALAALVTGLAGLG 94


>gi|189219248|ref|YP_001939889.1| pyrroloquinoline quinone biosynthesis protein PqqE
           [Methylacidiphilum infernorum V4]
 gi|189186106|gb|ACD83291.1| Coenzyme PQQ synthesis protein E, radical SAM superfamily enzyme
           [Methylacidiphilum infernorum V4]
          Length = 386

 Score = 41.5 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105
           C +C ++            + ++   +++E    G  +      +GGEPL++ D+  LI+
Sbjct: 36  CPYC-SNSTSYLHWLKKELSTEEWIRVLKEAQKLGILQ---VYFSGGEPLVRKDLITLIR 91

Query: 106 ALNKRGFEIAVETNGTI 122
             +  GF   + T GT+
Sbjct: 92  TAHDLGFYSNMSTGGTL 108


>gi|52548443|gb|AAU82292.1| pyruvate-formate lyase-activating enzyme [uncultured archaeon
           GZfos13E1]
          Length = 666

 Score = 41.5 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 13/93 (13%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRY-----CVLTGGEPLLQVDV-PLIQALNKRGFEI 114
                +  Q ++LI E+ I    E R        +TGGEP LQ D+   +  L K  + +
Sbjct: 470 NPELVDPKQFSNLISEKKIFSFLEERRGKLDAVEITGGEPTLQPDLIDFMCDLKKLDYLV 529

Query: 115 AVETNGTIE--PPQGI-----DWICVSPKAGCD 140
            +++NG+      + I     D+I +  KA  +
Sbjct: 530 KLDSNGSKPEILSEAIEHEIVDYIAMDVKAPLE 562


>gi|254787180|ref|YP_003074609.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Teredinibacter turnerae T7901]
 gi|237687254|gb|ACR14518.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Teredinibacter turnerae T7901]
          Length = 372

 Score = 41.5 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 86  RYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144
               + GGEPL+  ++P LI  +  R   + + TN  +   + ID    SP     + + 
Sbjct: 74  PIVSIPGGEPLIHREMPELIAGIVARKKYVYLCTN-ALLLEKHIDKYTPSPYLTFSIHLD 132

Query: 145 G 145
           G
Sbjct: 133 G 133


>gi|310287704|ref|YP_003938962.1| Pyruvate formate-lyase activating enzyme [Bifidobacterium bifidum
           S17]
 gi|309251640|gb|ADO53388.1| Pyruvate formate-lyase activating enzyme [Bifidobacterium bifidum
           S17]
          Length = 293

 Score = 41.5 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 30/135 (22%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G    +D +   ++   
Sbjct: 71  RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGQPVYLDAMIKKVDRYK 113

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG---TIEPPQGIDWICV 133
              +        +GGE ++Q      +  A  + G    ++T+G   T    + ID I +
Sbjct: 114 DLFKATHGGITFSGGESMMQPAFVSRVFHAAKEMGVHTCLDTSGFLNTNYTDEMIDDIDL 173

Query: 134 SPKAGCDLKIKGGQE 148
                C L +K G E
Sbjct: 174 -----CLLDVKSGDE 183


>gi|254973814|ref|ZP_05270286.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile QCD-66c26]
 gi|255091201|ref|ZP_05320679.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile CIP 107932]
 gi|255312858|ref|ZP_05354441.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile QCD-76w55]
 gi|255515617|ref|ZP_05383293.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile QCD-97b34]
 gi|255648711|ref|ZP_05395613.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile QCD-37x79]
 gi|306518831|ref|ZP_07405178.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile QCD-32g58]
 gi|317411750|sp|C9YHW3|HPDA_CLODR RecName: Full=4-hydroxyphenylacetate decarboxylase activating
           enzyme; Short=Hpd-AE
 gi|317411752|sp|C9XIS7|HPDA_CLODC RecName: Full=4-hydroxyphenylacetate decarboxylase activating
           enzyme; Short=Hpd-AE
          Length = 316

 Score = 41.5 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           Y VD+L  +I+       +       +GGEPLLQ +    ++   ++     A+ET+
Sbjct: 117 YTVDELVQVIKRD-SNNWRSNGGVTFSGGEPLLQHEFLHEVLLKCHEVNIHTAIETS 172


>gi|209963664|ref|YP_002296579.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Rhodospirillum centenum SW]
 gi|209957130|gb|ACI97766.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Rhodospirillum centenum SW]
          Length = 217

 Score = 41.5 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 41/126 (32%), Gaps = 30/126 (23%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
              VFC   GC              C +C   D     +          +Q+   +E + 
Sbjct: 22  VATVFC--QGCP-----------WACPYCHNPD----LLPARGQRELAWEQVLAFLEGRR 64

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWIC 132
              +      V +GGE  LQ  +P  ++ +   GF I + T G            +DW+ 
Sbjct: 65  GLLDG----VVFSGGEATLQAALPDAMRTVRGMGFRIGLHTGGPYPERLADLLPLLDWVG 120

Query: 133 VSPKAG 138
              KA 
Sbjct: 121 FDVKAP 126


>gi|226946196|ref|YP_002801269.1| pyrroloquinoline quinone biosynthesis protein PqqE [Azotobacter
           vinelandii DJ]
 gi|259534381|sp|C1DEW5|PQQE_AZOVD RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|226721123|gb|ACO80294.1| coenzyme PQQ biosynthesis E [Azotobacter vinelandii DJ]
          Length = 383

 Score = 41.5 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 19/114 (16%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF       G   +  +  ++  +    G  +  +  
Sbjct: 14  PLWLLAELTYRCPLQCPYCSNPLDFAR----HGAELSTAEWIEVFRQARELGAAQLGF-- 67

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134
            +GGEPL+ Q    LI A    G+   + T+G              G+D I VS
Sbjct: 68  -SGGEPLVRQDLSELIGAARGLGYYTNLITSGIGLSEARIAEFATAGLDHIQVS 120


>gi|311064602|ref|YP_003971327.1| pyruvate formate-lyase activating enzyme [Bifidobacterium bifidum
           PRL2010]
 gi|310866921|gb|ADP36290.1| pflA Pyruvate formate-lyase activating enzyme [Bifidobacterium
           bifidum PRL2010]
          Length = 293

 Score = 41.5 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 30/135 (22%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G    +D +   ++   
Sbjct: 71  RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGQPVYLDAMIKKVDRYK 113

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG---TIEPPQGIDWICV 133
              +        +GGE ++Q      +  A  + G    ++T+G   T    + ID I +
Sbjct: 114 DLFKATHGGITFSGGESMMQPAFVSRVFHAAKEMGVHTCLDTSGFLNTNYTDEMIDDIDL 173

Query: 134 SPKAGCDLKIKGGQE 148
                C L +K G E
Sbjct: 174 -----CLLDVKSGDE 183


>gi|238025534|ref|YP_002909766.1| pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia
           glumae BGR1]
 gi|237880199|gb|ACR32531.1| Pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia
           glumae BGR1]
          Length = 393

 Score = 41.5 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 11/95 (11%)

Query: 30  SGCNLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +G  LW   E   R   QC +C    DF      +G   +    A ++ E    G  +  
Sbjct: 22  AGLPLWLLAELTYRCPLQCPYCSNPLDFAR----QGEELSTADWARVMGEARALGAAQ-- 75

Query: 87  YCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
               +GGEPL++ D+P L+    + GF   + T+G
Sbjct: 76  -IGFSGGEPLVREDLPELVAEARRLGFYTNLITSG 109


>gi|218778023|ref|YP_002429341.1| glycyl-radical enzyme activating protein family [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759407|gb|ACL01873.1| Pyruvate formate lyase activating enzyme [Desulfatibacillum
           alkenivorans AK-01]
          Length = 317

 Score = 41.5 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119
           G    ++ LA  +E+     E  G    ++GGEP LQ D    L++    +G   A++T 
Sbjct: 102 GEDRTLEDLAAELEKDRAYFESSGGGVTISGGEPALQADFAASLLRICQGKGLHTALDTC 161

Query: 120 GTIEP 124
           G ++P
Sbjct: 162 GMVKP 166


>gi|119872831|ref|YP_930838.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM
           4184]
 gi|119674239|gb|ABL88495.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 270

 Score = 41.5 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 9/91 (9%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           LW        + +C++C   F         +    ++ + I +               GG
Sbjct: 2   LWFILTTGACNLKCKYCGGSFDNNYSPWRPKITAGEVVNFIAQ-----RDRKPIVFFYGG 56

Query: 94  EPLL--QVDVPLIQALNKRGFEIAVETNGTI 122
           EPLL  Q  V +++AL    F I   TNGT 
Sbjct: 57  EPLLNVQYIVDVLKALPNARFGIQ--TNGTF 85


>gi|237653274|ref|YP_002889588.1| radical SAM protein [Thauera sp. MZ1T]
 gi|237624521|gb|ACR01211.1| Radical SAM domain protein [Thauera sp. MZ1T]
          Length = 402

 Score = 41.5 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 6/100 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            +       R +  C  C +  +       G  N  ++  ++++     +      +L+G
Sbjct: 26  PVVIWNLIRRCNLTCEHCYS--ISADKDFPGELNTQEVFKVMDDLK---DARVPVLILSG 80

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           GEPLL+ D+  + +     GF + + +NGT+     ID I
Sbjct: 81  GEPLLRPDIFDIARRAKGMGFYVGLSSNGTLIDESNIDAI 120


>gi|222055506|ref|YP_002537868.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221564795|gb|ACM20767.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 316

 Score = 41.5 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 8/88 (9%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105
           C+ C    +     +  +  + +   LI++  + G K     +LTGGEPLL   +  ++ 
Sbjct: 30  CKHC----LNKHRRENAQITLKEAEGLIDDLAVHGIKR---IILTGGEPLLFDGIFQVVN 82

Query: 106 ALNKRGFEIAVETNGTIEPPQGIDWICV 133
               +G  +++ TNG +     +D +C 
Sbjct: 83  YAQAKGMTVSINTNGLLLDKHFLDLLCC 110


>gi|14325177|dbj|BAB60102.1| molybdenum cofactor biosynthesis protein [Thermoplasma volcanium
           GSS1]
          Length = 606

 Score = 41.5 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L +    +R    C +C   F   +         DQ+  ++               +TGG
Sbjct: 145 LGNIVVTNRCDLSCWYC--FFYAKENEPIYEPTQDQIRMMLRRMKNEKPVGANAVQITGG 202

Query: 94  EPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWI 131
           EP ++ D + +++   + G+  + + TN ++      D++
Sbjct: 203 EPTMRDDIIDIVRIAREEGYDHVQLNTN-SVRAAFDPDFV 241


>gi|332160274|ref|YP_004296851.1| putative pyruvate formate-lyase 3 activating enzyme [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607156|emb|CBY28654.1| pyruvate formate-lyase activating enzyme [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664504|gb|ADZ41148.1| putative pyruvate formate-lyase 3 activating enzyme [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330863012|emb|CBX73144.1| putative pyruvate formate-lyase 3-activating enzyme [Yersinia
           enterocolitica W22703]
          Length = 299

 Score = 41.5 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           G   ++D   + +        + G    L+GGEP +Q  V   L+Q  +++G   AVE+
Sbjct: 101 GSPIDIDATMETLLRDLPFYRRSGGGVTLSGGEPFMQPAVAAELLQRCHQQGIHTAVES 159


>gi|289624772|ref|ZP_06457726.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330871198|gb|EGH05907.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 389

 Score = 41.5 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C       +  +G     +Q   +++E    G  +      +
Sbjct: 22  PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELTTEQWFKVMQEAREMGAAQ---IGFS 76

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI      GF   + T+G
Sbjct: 77  GGEPLVRQDLAELIAEARCLGFYTNLITSG 106


>gi|84490327|ref|YP_448559.1| organic radical activating protein [Methanosphaera stadtmanae DSM
           3091]
 gi|84373646|gb|ABC57916.1| predicted organic radical activating enzyme [Methanosphaera
           stadtmanae DSM 3091]
          Length = 198

 Score = 41.5 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 21/93 (22%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           ++F    GC              C  C++         G  Y+V +LA  I        K
Sbjct: 22  SIFV--QGC-----------LKHCIGCNSPQTW-DLDGGILYDVKKLAKNI-----LKNK 62

Query: 84  EGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
           +      +GGEP LQ      L   L+  G  I
Sbjct: 63  DIEGVTFSGGEPFLQSKALGELAVILHDNGLSI 95


>gi|16081755|ref|NP_394141.1| hypothetical protein Ta0670 [Thermoplasma acidophilum DSM 1728]
 gi|10639956|emb|CAC11808.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 571

 Score = 41.5 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L +    +R    C +C   F   +         DQ+  ++               +TGG
Sbjct: 110 LGNIVVTNRCDLSCWYC--FFYAKENEPIYEPTQDQIRMMLRRMKNEKPVGANAVQITGG 167

Query: 94  EPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWI 131
           EP ++ D + +++   + G+  + + TN ++      D++
Sbjct: 168 EPTMRDDIIDIVRIAREEGYDHVQLNTN-SVRAAFDPDFV 206


>gi|315267700|gb|ADT94553.1| Radical SAM domain protein [Shewanella baltica OS678]
          Length = 286

 Score = 41.5 bits (97), Expect = 0.070,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 17/105 (16%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCV 89
           NL +       S +C  CDT           +   Y V+++  ++  Q            
Sbjct: 60  NLNNKPRISWDSERCSQCDTCLAVCPKQASPKVTHYTVEEILGILHSQR----HFINGIT 115

Query: 90  LTGGEPLLQVDVPLIQALNK--------RGFEIAVETNGTIEPPQ 126
           ++GGE  LQ  +P I AL K              ++TNG++    
Sbjct: 116 VSGGEASLQ--LPFIIALFKGIKASESLSHLTCMLDTNGSLSLTG 158


>gi|288803833|ref|ZP_06409259.1| pyruvate formate-lyase 1-activating enzyme [Prevotella
           melaninogenica D18]
 gi|288333667|gb|EFC72116.1| pyruvate formate-lyase 1-activating enzyme [Prevotella
           melaninogenica D18]
          Length = 257

 Score = 41.5 bits (97), Expect = 0.070,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 30/126 (23%)

Query: 2   KLYSI--KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFV 55
            +  +   E F ++ G G        +F    GC           + +C++C   DT   
Sbjct: 16  MMLRVHSVESFGSVDGPGIRFV----IF--LKGC-----------AMRCQYCHNPDT--- 55

Query: 56  GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFE 113
                 G   +VD +     +++ +         ++GGE LL  Q    L +     G  
Sbjct: 56  -WDRAGGNLRSVDDVLSQ-AQRYRSYWGTKGGITVSGGEALLQIQPLTELFRKAKALGIN 113

Query: 114 IAVETN 119
             ++T+
Sbjct: 114 TCLDTS 119


>gi|218886327|ref|YP_002435648.1| molybdenum cofactor biosynthesis protein A [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218757281|gb|ACL08180.1| molybdenum cofactor biosynthesis protein A [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 361

 Score = 41.5 bits (97), Expect = 0.070,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 12/91 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR + +C +C         ++      D +    ++     +  E+      LTGGEP +
Sbjct: 29  DRCNLRCSYC------WGCSEMRFIPHDDVLRYEEMARIVDVAVEEGVEKVRLTGGEPFV 82

Query: 98  QVDVP-LIQALNKRG--FEIAVETNGTIEPP 125
           +  +   +  L++R    +I + TNGT+  P
Sbjct: 83  RKGLTGFLDMLHRRHPALDIRITTNGTLLAP 113


>gi|171058974|ref|YP_001791323.1| molybdenum cofactor biosynthesis protein A [Leptothrix cholodnii
           SP-6]
 gi|170776419|gb|ACB34558.1| molybdenum cofactor biosynthesis protein A [Leptothrix cholodnii
           SP-6]
          Length = 381

 Score = 41.5 bits (97), Expect = 0.070,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 15/131 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C    V  +  +   +  +    ++     I  E+  R   LTGGEPLL+ 
Sbjct: 50  DRCNFRCSYCMPKEVFDKNHQFLPHAQLLSFEEITRLARIFVERGVRKIRLTGGEPLLRK 109

Query: 100 DVP-LIQALN------KRGFEIAVETNGTIEP-------PQGIDWICVSPKAGCDLKIKG 145
           ++  LI+ L        +  ++ + TNG++           G+  + VS  A  D   + 
Sbjct: 110 NIERLIEMLAVLRTPDGQALDLTLTTNGSLLARKARSLRDAGLQRVTVSLDAMDDAIFRR 169

Query: 146 GQELKLVFPQV 156
             ++      V
Sbjct: 170 MNDVDFPVADV 180


>gi|328469356|gb|EGF40302.1| putative pyruvate formate-lyase 3 activating enzyme [Vibrio
           parahaemolyticus 10329]
          Length = 309

 Score = 41.5 bits (97), Expect = 0.071,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           G     D L +++ +     ++       +GGEPL+Q ++   L + L++     AVE+ 
Sbjct: 110 GEAAKSDDLFEVLMKDKPFYDQSQGGVTFSGGEPLMQPNLVAELAERLHQNHVSTAVESC 169

Query: 120 GTIEP 124
             +  
Sbjct: 170 MHVPW 174


>gi|256751942|ref|ZP_05492812.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749147|gb|EEU62181.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 522

 Score = 41.5 bits (97), Expect = 0.071,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 11/76 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPL 103
            C FC     G Q      ++  QL   ++           +  +TGGEPL++     PL
Sbjct: 217 NCNFC--QIGGPQKDTNKSFDCKQLVRFLK-------GNNYHIQITGGEPLIRKSELTPL 267

Query: 104 IQALNKRGFEIAVETN 119
           I+ L K G  I + TN
Sbjct: 268 IRELKKDGHIITLLTN 283


>gi|118576476|ref|YP_876219.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A]
 gi|118194997|gb|ABK77915.1| Fe-S oxidoreductase [Cenarchaeum symbiosum A]
          Length = 315

 Score = 41.5 bits (97), Expect = 0.071,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 25/109 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C   +  +   +     V++   +I+E++   +       + 
Sbjct: 47  CNL-----------HCVHC---YWWLNRKENEELGVEEWKKIIDEKF--KKNHVFVVTVV 90

Query: 92  GGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGID----WICVS 134
           GGEPL++ ++     +   KR   +   TNGT   P+  D    WI + 
Sbjct: 91  GGEPLMRPEIVELFAKEFPKRACVV---TNGTWPIPRLRDIYFYWISID 136


>gi|144900214|emb|CAM77078.1| Fe-S oxidoreductase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 437

 Score = 41.5 bits (97), Expect = 0.071,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C       +   G  +   ++ D I EQ         +  L+
Sbjct: 163 CNL-----------RCAMC--GHEVWKSNSG--FMEMEVFDRILEQSKANGITTLHI-LS 206

Query: 92  G-GEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
           G GEP+L   V  +++     GF + + TNGT
Sbjct: 207 GQGEPMLHPQVFEMLEKAVAMGFNVGIVTNGT 238


>gi|118497356|ref|YP_898406.1| radical SAM family protein [Francisella tularensis subsp. novicida
           U112]
 gi|195536045|ref|ZP_03079052.1| radical SAM domain protein [Francisella tularensis subsp. novicida
           FTE]
 gi|118423262|gb|ABK89652.1| radical SAM family protein [Francisella novicida U112]
 gi|194372522|gb|EDX27233.1| radical SAM domain protein [Francisella tularensis subsp. novicida
           FTE]
          Length = 361

 Score = 41.5 bits (97), Expect = 0.071,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 16/92 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       R S++C          +      ++ ++   +I+             VL+
Sbjct: 16  CNLKCV--HCRSSSEC----------EVLGHPDFSTEEGFRIIDSIVAFA---NPVLVLS 60

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D+  L +    +G  +A+ TNG++
Sbjct: 61  GGEPLLRADIFELAEYGANKGLRMALATNGSL 92


>gi|91777663|ref|YP_552871.1| pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia
           xenovorans LB400]
 gi|91690323|gb|ABE33521.1| Pyrroloquinoline quinone synthesis E [Burkholderia xenovorans
           LB400]
          Length = 407

 Score = 41.5 bits (97), Expect = 0.071,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVL 90
            LW   E   R    C FC   +  +  T   R  + +Q   ++ E    G  +  +   
Sbjct: 23  PLWLLAELTYRCPLHCAFC---YNPVDYTDHSRELSTEQWIGVLREARALGAAQLGF--- 76

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           +GGEPL++ D+  L+    K GF   + T+G
Sbjct: 77  SGGEPLVRDDLEVLVGEARKLGFYTNLITSG 107


>gi|13541763|ref|NP_111451.1| Fe-S oxidoreductase [Thermoplasma volcanium GSS1]
          Length = 571

 Score = 41.5 bits (97), Expect = 0.071,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L +    +R    C +C   F   +         DQ+  ++               +TGG
Sbjct: 110 LGNIVVTNRCDLSCWYC--FFYAKENEPIYEPTQDQIRMMLRRMKNEKPVGANAVQITGG 167

Query: 94  EPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWI 131
           EP ++ D + +++   + G+  + + TN ++      D++
Sbjct: 168 EPTMRDDIIDIVRIAREEGYDHVQLNTN-SVRAAFDPDFV 206


>gi|20089004|ref|NP_615079.1| molybdenum cofactor biosynthesis protein A [Methanosarcina
           acetivorans C2A]
 gi|24211983|sp|Q8TUG2|MOAA_METAC RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|19913858|gb|AAM03559.1| molybdenum cofactor biosynthesis protein A [Methanosarcina
           acetivorans C2A]
          Length = 334

 Score = 41.5 bits (97), Expect = 0.071,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 21/111 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL      +  +  C  C        G+ G   + + +  ++ E     +   R    +
Sbjct: 40  CNLSCMYCHNEGADCCS-C--------GSLGHEMSPELICGIVRE---AAKFGVRKVKFS 87

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134
           GGEPL + D   I A      E++  TNG        T++   G+D + VS
Sbjct: 88  GGEPLFRKDFEEILACLPPLKEVSATTNGILLEKRAKTLKA-AGLDRVNVS 137


>gi|260681933|ref|YP_003213218.1| 4-hydroxyphenylacetate decarboxylase activating subunit
           [Clostridium difficile CD196]
 gi|260685531|ref|YP_003216664.1| 4-hydroxyphenylacetate decarboxylase activating subunit
           [Clostridium difficile R20291]
 gi|260208096|emb|CBA60347.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile CD196]
 gi|260211547|emb|CBE01729.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile R20291]
          Length = 326

 Score = 41.5 bits (97), Expect = 0.072,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           Y VD+L  +I+       +       +GGEPLLQ +    ++   ++     A+ET+
Sbjct: 127 YTVDELVQVIKRD-SNNWRSNGGVTFSGGEPLLQHEFLHEVLLKCHEVNIHTAIETS 182


>gi|161353606|ref|NP_459945.2| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|162139598|ref|YP_215911.2| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|168466557|ref|ZP_02700419.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|198246171|ref|YP_002214893.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|224582779|ref|YP_002636577.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|195630908|gb|EDX49494.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197940687|gb|ACH78020.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|224467306|gb|ACN45136.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|267992705|gb|ACY87590.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|312911957|dbj|BAJ35931.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321223293|gb|EFX48362.1| Pyruvate formate-lyase activating enzyme [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322713963|gb|EFZ05534.1| Pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|326622646|gb|EGE28991.1| Pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 265

 Score = 41.5 bits (97), Expect = 0.072,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 58/177 (32%), Gaps = 36/177 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 46  FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEDLMKEVVTYRHFMNASG 90

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKAGCDL 141
                +GGE +LQ +      +A  K G    ++TNG        ID  + V+     DL
Sbjct: 91  GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDL 150

Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
           K     E+     Q  V   N+   +F ++          ++N  + I Y    P W
Sbjct: 151 KQMN-DEI----HQNLVGVSNHRTLEFAQY--------LSKKNVKVWIRYVVV-PGW 193


>gi|238797475|ref|ZP_04640973.1| pyruvate formate-lyase 3-activating enzyme [Yersinia mollaretii
           ATCC 43969]
 gi|238718616|gb|EEQ10434.1| pyruvate formate-lyase 3-activating enzyme [Yersinia mollaretii
           ATCC 43969]
          Length = 299

 Score = 41.5 bits (97), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           G   +++   + +        + G    L+GGEP +Q ++   L+Q  ++ G   AVE+
Sbjct: 101 GNPIDIEATMETLLRDLPFYRRSGGGVTLSGGEPFMQPEIAAELLQRCHQLGIHTAVES 159


>gi|255523841|ref|ZP_05390805.1| glycyl-radical enzyme activating protein family [Clostridium
           carboxidivorans P7]
 gi|255512403|gb|EET88679.1| glycyl-radical enzyme activating protein family [Clostridium
           carboxidivorans P7]
          Length = 300

 Score = 41.5 bits (97), Expect = 0.073,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 43  LSAQCRFCD--TDFV--GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
              +C  C   TDF     +   G    V +L   I +  +  ++ G     +GGEPL+ 
Sbjct: 80  DEEKCALCGKCTDFCPNTAREYVGKDVTVSELMKEIMKDEVFYDESGGGVTFSGGEPLIH 139

Query: 99  VDV--PLIQALNKRGFEIAVETNGTIEPPQ 126
           +D    +++   ++G    V+T+G +    
Sbjct: 140 IDFLNEVLKKCKEKGIHTTVDTSGCVPWES 169


>gi|188534276|ref|YP_001908073.1| Pyruvate formate lyase activating enzyme 1 [Erwinia tasmaniensis
           Et1/99]
 gi|188029318|emb|CAO97195.1| Pyruvate formate lyase activating enzyme 1 [Erwinia tasmaniensis
           Et1/99]
          Length = 254

 Score = 41.5 bits (97), Expect = 0.073,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G   +V +L D +          G
Sbjct: 35  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVSVAELMDDVLSYRHYINASG 79

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A   +G    ++TNG
Sbjct: 80  GGVTASGGEAILQAEFVRDWFRACRAKGIHTCLDTNG 116


>gi|166368417|ref|YP_001660690.1| radical S-adenosylmethionine superfamily protein [Microcystis
           aeruginosa NIES-843]
 gi|166090790|dbj|BAG05498.1| radical S-adenosylmethionine superfamily protein [Microcystis
           aeruginosa NIES-843]
          Length = 338

 Score = 41.5 bits (97), Expect = 0.073,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 86  RYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144
               + GGEPLL   +  +++ L  R   + + TN  +   + +D    SP     + + 
Sbjct: 74  PVVSIPGGEPLLHPQIDEIVKGLVDRKKFVYLCTN-ALLLEKSLDKFTPSPYLTFSVHLD 132

Query: 145 G 145
           G
Sbjct: 133 G 133


>gi|171184746|ref|YP_001793665.1| radical SAM domain-containing protein [Thermoproteus neutrophilus
           V24Sta]
 gi|170933958|gb|ACB39219.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 357

 Score = 41.5 bits (97), Expect = 0.073,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 9/91 (9%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           LW        + QCR+C   F         +    ++A  I +               GG
Sbjct: 2   LWFVLTTGACNLQCRYCGGSFDERHSPWRPKVAAGEVARFIAQ-----RDGKPVVFFYGG 56

Query: 94  EPLL--QVDVPLIQALNKRGFEIAVETNGTI 122
           EPLL     V +++AL    F I   TNGT+
Sbjct: 57  EPLLNPHYVVEVMEALPNARFGIQ--TNGTL 85


>gi|161075741|gb|ABX56618.1| coenzyme PQQ synthesis protein E [Methylacidiphilum infernorum V4]
          Length = 373

 Score = 41.5 bits (97), Expect = 0.073,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-P 102
             QC +C ++            + ++   +++E    G  +      +GGEPL++ D+  
Sbjct: 20  PLQCPYC-SNSTSYLHWLKKELSTEEWIRVLKEAQKLGILQ---VYFSGGEPLVRKDLIT 75

Query: 103 LIQALNKRGFEIAVETNGTI 122
           LI+  +  GF   + T GT+
Sbjct: 76  LIRTAHDLGFYSNMSTGGTL 95


>gi|15615089|ref|NP_243392.1| molybdenum cofactor biosynthesis protein A [Bacillus halodurans
           C-125]
 gi|24212015|sp|Q9K9W9|MOAA_BACHD RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|10175146|dbj|BAB06245.1| molybdopterin cofactor biosynthesis [Bacillus halodurans C-125]
          Length = 338

 Score = 41.5 bits (97), Expect = 0.073,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 20/110 (18%)

Query: 41  DRLSAQCRFC---DT---DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C   D    D+  ++ T     + ++   L+           +   +TGGE
Sbjct: 23  DRCNFRCHYCMPADIFGPDYPFLKKT--EILSFEETNRLV--HLFHQTSPIKKIRITGGE 78

Query: 95  PLLQVDVP-LIQALNK-RGFE-IAVETNGTIEP-------PQGIDWICVS 134
           PL++ DV  LI  L    G E +A+ TNGT+ P         G+  + VS
Sbjct: 79  PLMRKDVDQLISMLTATTGIEDVAMTTNGTLLPKMADKLKKAGLKRVTVS 128


>gi|330821990|ref|YP_004350852.1| Pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia
           gladioli BSR3]
 gi|327373985|gb|AEA65340.1| Pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia
           gladioli BSR3]
          Length = 398

 Score = 41.5 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF       G        AD +               
Sbjct: 32  PLWLLAEVTYRCPLQCPYCSNPLDFARQGEELGT-------ADWVRVMGEARAMGAAQIG 84

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +GGEPL++ D+P LI    + G+   + T+G
Sbjct: 85  FSGGEPLVRPDLPELIAEARRLGYYTNLITSG 116


>gi|312132964|ref|YP_004000303.1| pfla [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773946|gb|ADQ03434.1| PflA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 293

 Score = 41.5 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 40/140 (28%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G    +D +   ++   
Sbjct: 71  RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMIKKVDRYK 113

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG------TIEPPQGI 128
              +        +GGE ++Q     +  +     + G    ++T+G      T E  + I
Sbjct: 114 DLFKATHGGITFSGGESMMQP--AFVSRVFHAAKEMGVHTCLDTSGFLNTNYTDEMLEDI 171

Query: 129 DWICVSPKAGCDLKIKGGQE 148
           D +C+       L +K G E
Sbjct: 172 D-LCL-------LDVKSGDE 183


>gi|289828913|ref|ZP_06546639.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
          Length = 251

 Score = 41.5 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 46  FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEDLMKEVVTYRHFMNASG 90

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 91  GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 127


>gi|242014079|ref|XP_002427725.1| molybdopterin cofactor synthesis protein A, putative [Pediculus
           humanus corporis]
 gi|212512166|gb|EEB14987.1| molybdopterin cofactor synthesis protein A, putative [Pediculus
           humanus corporis]
          Length = 569

 Score = 41.5 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 18/93 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C  +       +      D++  L E     G K+ R   LT
Sbjct: 74  CNL-----------RCNYCMPEEGVHLSHRSNLLTTDEILKLSELFVRQGIKKIR---LT 119

Query: 92  GGEPLLQVDV-PLIQALNK-RGFE--IAVETNG 120
           GGEP ++ D+  LI+ L K +G    +++ TNG
Sbjct: 120 GGEPTIRKDLSALIRGLKKLKGLTEGVSITTNG 152


>gi|148657495|ref|YP_001277700.1| radical SAM domain-containing protein [Roseiflexus sp. RS-1]
 gi|148569605|gb|ABQ91750.1| Radical SAM domain protein [Roseiflexus sp. RS-1]
          Length = 800

 Score = 41.5 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 18/79 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C      +      +     V  +  L EE    G ++    V+T
Sbjct: 462 CNLTC--------AHC------YAEAGPRRREAMPVGDVLRLAEEAARLGFQK---VVIT 504

Query: 92  GGEPLLQVD-VPLIQALNK 109
           GGEPL+      L++ L  
Sbjct: 505 GGEPLMHPQRDALLEGLAA 523



 Score = 34.6 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 12/83 (14%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------ 97
            AQC +C               +   L          G+    +    GGEPLL      
Sbjct: 18  PAQCSYC-----FGPHQGSPTMSPATLEATARWARTLGDGGELHITFHGGEPLLPGVRFY 72

Query: 98  -QVDVPLIQALNKRGFEIAVETN 119
            Q    L   L  R  + AV++N
Sbjct: 73  RQALPLLRDGLAPRRVQFAVQSN 95


>gi|319943485|ref|ZP_08017767.1| molybdenum cofactor biosynthesis protein A [Lautropia mirabilis
           ATCC 51599]
 gi|319743300|gb|EFV95705.1| molybdenum cofactor biosynthesis protein A [Lautropia mirabilis
           ATCC 51599]
          Length = 381

 Score = 41.5 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 29/116 (25%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D +F+    + G   + +++  +       G K+ R   LTG
Sbjct: 56  DRCNFRCSYCMPREVFGKDHEFL----SHGSLLSFEEITRVAGLMVGLGVKKIR---LTG 108

Query: 93  GEPLLQVDVP-LIQALN------KRGFEIAVETNGTIEP-------PQGIDWICVS 134
           GEPLL+ D+  LI  L+       +  E+ + TNG++           G+D + VS
Sbjct: 109 GEPLLRRDLETLIAQLSCLRQPDGQPVELTLTTNGSLLAKKAQSLREAGLDRVTVS 164


>gi|308234714|ref|ZP_07665451.1| pyruvate formate-lyase activating enzyme [Gardnerella vaginalis
           ATCC 14018]
 gi|311114518|ref|YP_003985739.1| pyruvate formate-lyase activating enzyme [Gardnerella vaginalis
           ATCC 14019]
 gi|310946012|gb|ADP38716.1| pyruvate formate-lyase activating enzyme [Gardnerella vaginalis
           ATCC 14019]
          Length = 293

 Score = 41.5 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 28/135 (20%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G    +D +   ++   
Sbjct: 71  RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMIKKVDRYQ 113

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130
              +  G     +GGE ++Q      + +A  + G    ++T+G      T E    ID 
Sbjct: 114 SLFKATGGGITFSGGESMMQPAFVSRVFRAAKEMGVHTCLDTSGFLNRNYTDEMIDDIDL 173

Query: 131 ICVSPKAGCDLKIKG 145
             +  K+G +   K 
Sbjct: 174 CLLDVKSGIEETYKK 188


>gi|208779149|ref|ZP_03246495.1| radical SAM domain protein [Francisella novicida FTG]
 gi|254374177|ref|ZP_04989659.1| hypothetical protein FTDG_00340 [Francisella novicida GA99-3548]
 gi|151571897|gb|EDN37551.1| hypothetical protein FTDG_00340 [Francisella novicida GA99-3548]
 gi|208744949|gb|EDZ91247.1| radical SAM domain protein [Francisella novicida FTG]
          Length = 361

 Score = 41.5 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 16/92 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       R S++C          +      ++ ++   +I+             VL+
Sbjct: 16  CNLKCV--HCRSSSEC----------EVLGHPDFSTEEGFRIIDSIVAFA---NPVLVLS 60

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D+  L +    +G  +A+ TNG++
Sbjct: 61  GGEPLLRADIFELAEYGANKGLRMALATNGSL 92


>gi|78044427|ref|YP_360054.1| radical SAM domain-containing protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996542|gb|ABB15441.1| radical SAM domain protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 331

 Score = 41.5 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 35/158 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL+           C      +           + ++   LI+E    G    +  + +
Sbjct: 11  CNLYC--------EHC------YRDAGAKVEEELSTEEGKALIDEIVKAG---FKIMIFS 53

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
           GGEPL++ D + L+   +++G +    TNGT+        I +        K+K    L 
Sbjct: 54  GGEPLMREDILELVDYASQKGLKPVFGTNGTL--------ITL----EMAQKLKKAGALA 101

Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
           +     +V PE +     +RF   P       E     
Sbjct: 102 MGISLDSVDPEKH-----DRFRASPGSWEKAVEGMKNC 134


>gi|325294473|ref|YP_004280987.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325064921|gb|ADY72928.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 384

 Score = 41.5 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL     +   + +         G    + G+  +D +A +               VLT
Sbjct: 20  CNLNCIHCRSSSTME------SEQGDFSFEDGKKLMDDIAKI----------SKPTIVLT 63

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ DV  L     ++GF + + TNG +
Sbjct: 64  GGEPLLREDVWDLAAYGTEKGFRMCIATNGVL 95


>gi|257458934|ref|ZP_05624054.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Campylobacter gracilis RM3268]
 gi|257443638|gb|EEV18761.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Campylobacter gracilis RM3268]
          Length = 240

 Score = 41.5 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 26/118 (22%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           F GCN+           +C +C   +     T  G+ + ++    ++ +    +      
Sbjct: 40  FCGCNM-----------RCNYC---YNPQIVTSRGKISNEEFLRFLDARAGKLQG----I 81

Query: 89  VLTGGE-PLLQVDVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVSPKAG 138
           V +GGE       +PL   + +RGF + V+TNG+             ID+I +  KA 
Sbjct: 82  VFSGGECTCASDFIPLAHEVKQRGFLLKVDTNGSNPQKIEEALNLGLIDYIALDFKAP 139


>gi|169828793|ref|YP_001698951.1| molybdenum cofactor biosynthesis protein A [Lysinibacillus
           sphaericus C3-41]
 gi|168993281|gb|ACA40821.1| Molybdenum cofactor biosynthesis protein A [Lysinibacillus
           sphaericus C3-41]
          Length = 308

 Score = 41.5 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 8/73 (10%)

Query: 53  DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-R 110
           D+  +   K   +  D++  L++     G K+ R   +TGGEPLL+ D+  LI  +++  
Sbjct: 9   DYAFLSSDKILNF--DEIERLVKIFVSLGVKKVR---ITGGEPLLRRDLTELIARIHRLE 63

Query: 111 GFE-IAVETNGTI 122
           G E IA+ TNGT+
Sbjct: 64  GVEDIALTTNGTL 76


>gi|57640225|ref|YP_182703.1| pyruvate-formate lyase-activating enzyme [Thermococcus kodakarensis
           KOD1]
 gi|57158549|dbj|BAD84479.1| pyruvate-formate lyase-activating enzyme [Thermococcus kodakarensis
           KOD1]
          Length = 306

 Score = 41.5 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 8/88 (9%)

Query: 37  GREQDRLSAQCR-FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
            RE+  +   C  FC T         G    VD+L   +E      +  G     +GGEP
Sbjct: 84  DREKCDVCGVCAEFCPT---SALKLVGRTITVDELMKEVERDVNLYDSSGGGVTFSGGEP 140

Query: 96  LLQVDVPLIQAL---NKRGFEIAVETNG 120
           L Q    L++AL    +R    A++T+G
Sbjct: 141 LFQPKF-LVEALKASKERHINTALDTSG 167


>gi|303242884|ref|ZP_07329346.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
 gi|302589581|gb|EFL59367.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
          Length = 319

 Score = 41.5 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 26/112 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR CD  +   +       + +Q+ DLI E     E   +   L+
Sbjct: 14  CNL-----------RCRMCD--YPSGKFWTNA-LSKEQIKDLIRE---AAELGVKTVELS 56

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ--------GIDWICVS 134
           GGEP+++ D+  +I        ++ + +NG +  P+        G+  +  S
Sbjct: 57  GGEPMMRKDIYEIISFAASLNLKVFMASNGVLIGPEEVKKLLDAGLTLVTFS 108


>gi|283781822|ref|YP_003372577.1| radical SAM domain-containing protein [Pirellula staleyi DSM 6068]
 gi|283440275|gb|ADB18717.1| Radical SAM domain protein [Pirellula staleyi DSM 6068]
          Length = 309

 Score = 41.5 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 8/91 (8%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           LW        +  C  C   FV    T       + DQ+   +EE    G KE  +   T
Sbjct: 24  LWFQVSGLLCNLACHHC---FVSSSPTNRSLEMLSFDQIKTRLEESIPLGVKEYYF---T 77

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           GGEP L   +  I  L+ +     V TNGT+
Sbjct: 78  GGEPFLHPQMTEILELSLQYGPTTVLTNGTV 108


>gi|16759841|ref|NP_455458.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29142386|ref|NP_805728.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|167550356|ref|ZP_02344113.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|168230866|ref|ZP_02655924.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168236882|ref|ZP_02661940.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168240823|ref|ZP_02665755.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168263542|ref|ZP_02685515.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168822927|ref|ZP_02834927.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194446466|ref|YP_002040168.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194448873|ref|YP_002044962.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194468500|ref|ZP_03074484.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194735970|ref|YP_002114021.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197248756|ref|YP_002145888.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197263733|ref|ZP_03163807.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|200389762|ref|ZP_03216373.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204930015|ref|ZP_03221036.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|213161616|ref|ZP_03347326.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213417319|ref|ZP_03350463.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213424589|ref|ZP_03357372.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213648477|ref|ZP_03378530.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213851463|ref|ZP_03381361.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|238913256|ref|ZP_04657093.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|25285894|pir||AH0612 pyruvate formate-lyase 1 activating enzyme [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502134|emb|CAD05370.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138016|gb|AAO69577.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|194405129|gb|ACF65351.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194407177|gb|ACF67396.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194454864|gb|EDX43703.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194711472|gb|ACF90693.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197212459|gb|ACH49856.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197241988|gb|EDY24608.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197290138|gb|EDY29495.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|199602207|gb|EDZ00753.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204321009|gb|EDZ06210.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205324549|gb|EDZ12388.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205334729|gb|EDZ21493.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205339962|gb|EDZ26726.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205340734|gb|EDZ27498.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205347768|gb|EDZ34399.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|322616401|gb|EFY13310.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619651|gb|EFY16526.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622653|gb|EFY19498.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629802|gb|EFY26577.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632476|gb|EFY29222.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637029|gb|EFY33732.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641610|gb|EFY38247.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322646103|gb|EFY42619.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649595|gb|EFY46026.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654103|gb|EFY50426.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658635|gb|EFY54897.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663492|gb|EFY59694.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322670228|gb|EFY66368.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671464|gb|EFY67586.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676820|gb|EFY72887.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682745|gb|EFY78764.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686424|gb|EFY82406.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323195947|gb|EFZ81114.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199765|gb|EFZ84854.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202758|gb|EFZ87794.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323209029|gb|EFZ93966.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211505|gb|EFZ96344.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323218010|gb|EGA02725.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323219918|gb|EGA04394.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323226858|gb|EGA11041.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229812|gb|EGA13935.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233037|gb|EGA17133.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240772|gb|EGA24814.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243088|gb|EGA27109.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323249749|gb|EGA33651.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323252778|gb|EGA36616.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255845|gb|EGA39592.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323260015|gb|EGA43643.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267984|gb|EGA51463.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269831|gb|EGA53280.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 265

 Score = 41.5 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 46  FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEDLMKEVVTYRHFMNASG 90

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 91  GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 127


>gi|331086370|ref|ZP_08335450.1| molybdenum cofactor biosynthesis protein A [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330406136|gb|EGG85659.1| molybdenum cofactor biosynthesis protein A [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 332

 Score = 41.5 bits (97), Expect = 0.076,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 29/135 (21%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGR-YNVDQLAD---LIEEQWITGEKEGRYCVLTGGE 94
           DR + +CR+C  D    GI+     +   ++++A+   +  E  IT  K      +TGGE
Sbjct: 18  DRCNLRCRYCMPD----GIKSIPMEKILTLEEIAEVCQIASELGITKFK------VTGGE 67

Query: 95  PLLQVD-VPLIQALNKRGF--EIAVETNGTIEP-------PQGIDWICVSPKAGCDLK-- 142
           PL++   + LI  L       ++ + TNG +           GID + VS    C  K  
Sbjct: 68  PLVRKGCIELIHMLKALPHTEQVTLTTNGILLAVYAKELKEAGIDGVNVSLDTLCAEKFA 127

Query: 143 -IKGGQELKLVFPQV 156
            I G   LK V   +
Sbjct: 128 EITGYDRLKDVLEGI 142


>gi|193214591|ref|YP_001995790.1| molybdenum cofactor biosynthesis protein A [Chloroherpeton
           thalassium ATCC 35110]
 gi|193088068|gb|ACF13343.1| molybdenum cofactor biosynthesis protein A [Chloroherpeton
           thalassium ATCC 35110]
          Length = 371

 Score = 41.5 bits (97), Expect = 0.076,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 14/95 (14%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA----DLIEEQWITGEKEGRYC 88
           N       DR + +C +C          KG R+          +++    + G       
Sbjct: 55  NYLRVAVTDRCNFRCVYC-------MPEKGIRFKPATALLSAKEILRVIGLAGSLGVEKV 107

Query: 89  VLTGGEPLLQVDVP--LIQALNKRGFE-IAVETNG 120
             TGGEPLL+ D+P  L +A    G   + + TNG
Sbjct: 108 RFTGGEPLLREDLPEILSEAAALPGIRSLHLTTNG 142


>gi|301345077|ref|ZP_07225818.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
           baumannii AB056]
          Length = 197

 Score = 41.5 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 20/174 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    D+   +          +  D+ ++    G  +  +  
Sbjct: 8   PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFDVFDQARQMGAVQLGF-- 61

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140
            +GGEPL+ Q    L+   ++ GF   + T+G        +     G+D I +S +A   
Sbjct: 62  -SGGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTEQRISHLKQAGLDHIQISFQASDP 120

Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
           +        K  F Q          +D+    L  +      +  +  I  C +
Sbjct: 121 VVNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIDKIIELCLE 173


>gi|302335095|ref|YP_003800302.1| pyruvate formate-lyase activating enzyme [Olsenella uli DSM 7084]
 gi|301318935|gb|ADK67422.1| pyruvate formate-lyase activating enzyme [Olsenella uli DSM 7084]
          Length = 253

 Score = 41.5 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 23/97 (23%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC +           +CR+C   DT        KG   + D L D   E++   
Sbjct: 23  IF--LQGCPM-----------RCRYCHNVDT----WPLDKGSETSADDLLDK-AERYRGY 64

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAV 116
                   ++GGE LLQ +  + L    ++R     +
Sbjct: 65  WGPQGGITVSGGEALLQAEFVLELFTKAHERHVNTCL 101


>gi|116696106|ref|YP_841682.1| Fe-S oxidoreductase [Ralstonia eutropha H16]
 gi|113530605|emb|CAJ96952.1| Predicted Fe-S oxidoreductase [Ralstonia eutropha H16]
          Length = 389

 Score = 41.5 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 22/120 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +V +  + ++E             +
Sbjct: 38  CNL-----------ACSGCGKIDY--PDPILNQRLSVQECLEAVDECG------APVVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
            GGEPLL  D+P ++Q +  R   + + TN  +   + +D    SP     + + G +E+
Sbjct: 79  AGGEPLLHKDMPQIVQGIIARRKFVYLCTN-ALLMEKKLDQYQPSPYFIWSVHLDGDREM 137


>gi|40062747|gb|AAR37641.1| molybdenum cofactor biosynthesis protein A [uncultured marine
           bacterium 439]
          Length = 331

 Score = 41.5 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 41  DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           D  + +C +C D D      T+    + +++  ++    +  E       LTGGEPLL+ 
Sbjct: 21  DHCNYRCHYCRDEDH-QTHTTRSEVLSFEEIVKIV---GLFAELGVTKVRLTGGEPLLRK 76

Query: 100 D-VPLIQALNK 109
           D + L + L  
Sbjct: 77  DILDLTRMLGD 87


>gi|311108349|ref|YP_003981202.1| molybdenum cofactor biosynthesis protein A 2 [Achromobacter
           xylosoxidans A8]
 gi|310763038|gb|ADP18487.1| molybdenum cofactor biosynthesis protein A 2 [Achromobacter
           xylosoxidans A8]
          Length = 380

 Score = 41.5 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 25/114 (21%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D+ +  +        + ++++ L       G ++ R   LTGGE
Sbjct: 60  DRCNFRCTYCMPREVFDSSYTFM--PHAALLSFEEISRLAGIFTQLGVEKIR---LTGGE 114

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           PLL+  +  L+  L +      R  ++ + TNG++           G+  + VS
Sbjct: 115 PLLRKHIENLVGQLAELRTPAGRPLDLTLTTNGSMLARKAAALKSAGLTRVTVS 168


>gi|302335104|ref|YP_003800311.1| glycyl-radical enzyme activating protein family [Olsenella uli DSM
           7084]
 gi|301318944|gb|ADK67431.1| glycyl-radical enzyme activating protein family [Olsenella uli DSM
           7084]
          Length = 314

 Score = 41.5 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119
           G    +D +    +E        G    L+GGE L Q +  L  + A   RG+  A+ET 
Sbjct: 112 GDDRTIDDVIAFFDEDADFYRMSGGGITLSGGEVLAQPEAALSILMAAKARGYHTAIETC 171

Query: 120 G 120
           G
Sbjct: 172 G 172


>gi|242278713|ref|YP_002990842.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242121607|gb|ACS79303.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 402

 Score = 41.5 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL     +     +                G  + ++   LI+    TG+      + T
Sbjct: 67  CNLACKHCRAEAHPE-------------PYPGELSTEEAKALIDTFPETGD---PIIIFT 110

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122
           GGEPLL      L+   N +G    +  NGT+
Sbjct: 111 GGEPLLRHDVFELVSYANDKGLRCVMAPNGTL 142


>gi|70607233|ref|YP_256103.1| hypothetical protein Saci_1489 [Sulfolobus acidocaldarius DSM 639]
 gi|68567881|gb|AAY80810.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
          Length = 323

 Score = 41.5 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 22/92 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC  +     G  G   + +++  +I+       ++    VL+
Sbjct: 34  CNL-----------HCSFC--NPSYYNGELGES-STEKVKKMID-----NMRDSSIVVLS 74

Query: 92  --GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
             GGEP + Q  + L++  +   F + + TNG
Sbjct: 75  FEGGEPTIRQDILELLEYAHDGSFYVMLTTNG 106


>gi|21226411|ref|NP_632333.1| metallo cofactor biosynthesis protein [Methanosarcina mazei Go1]
 gi|20904669|gb|AAM30005.1| metallo cofactor biosynthesis protein [Methanosarcina mazei Go1]
          Length = 399

 Score = 41.5 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       +        D +F     T+ G+  +D LA                 + +
Sbjct: 50  CNLKCVHCYAQAK------DEEFKNELSTEEGKALIDDLAA----------FGSPVMLFS 93

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           GGEP ++ D+P L     ++G    + TNGT+
Sbjct: 94  GGEPTIRKDLPELAAYAREKGMRAVISTNGTL 125


>gi|23465523|ref|NP_696126.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium longum
           NCC2705]
 gi|23326183|gb|AAN24762.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium longum
           NCC2705]
          Length = 293

 Score = 41.5 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 40/140 (28%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G    +D +   ++   
Sbjct: 71  RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMIKKVDRYK 113

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG------TIEPPQGI 128
              +        +GGE ++Q     +  +     + G    ++T+G      T E  + I
Sbjct: 114 DLFKATHGGITFSGGESMMQP--AFVSRVFHAAKEMGVHTCLDTSGFLNTNYTDEMLEDI 171

Query: 129 DWICVSPKAGCDLKIKGGQE 148
           D +C+       L +K G E
Sbjct: 172 D-LCL-------LDVKSGDE 183


>gi|312621308|ref|YP_004022921.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312201775|gb|ADQ45102.1| Radical SAM domain protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 430

 Score = 41.5 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
           C+ C   +   +      +++  +   ++          +  +++GGEP L+ D   ++ 
Sbjct: 101 CKGC---YSFNKYRNKEDFDL-SVDVFVDSIKQLKNYGLKRVIISGGEPTLRDD---LEV 153

Query: 107 LNKRGFEIAVE-----TNGTIEPPQGIDWI 131
           L +    I++E     TNG   P + I+ +
Sbjct: 154 LLREIKNISIEYVCLITNGIYFPEKLINVV 183


>gi|294496604|ref|YP_003543097.1| radical SAM protein [Methanohalophilus mahii DSM 5219]
 gi|292667603|gb|ADE37452.1| Radical SAM domain protein [Methanohalophilus mahii DSM 5219]
          Length = 492

 Score = 41.5 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 22/109 (20%)

Query: 30  SGCNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNV--DQLADL 73
           +GC L  G                 +R +  C  C   F   + T+G  Y     Q+ D+
Sbjct: 71  AGCPLSCGLCPSHKTTTLLANIDVTNRCNLNCPIC---FANAK-TRGFIYEPSFQQIEDM 126

Query: 74  IEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGF-EIAVETNG 120
           ++               +GGEP ++ D+P  IQ   + GF +I + TNG
Sbjct: 127 LKILREEKPTPCAAIQFSGGEPTVRDDLPAMIQKAKELGFVQIQIATNG 175


>gi|302346841|ref|YP_003815139.1| pyruvate formate-lyase 1-activating enzyme [Prevotella
           melaninogenica ATCC 25845]
 gi|302150736|gb|ADK96997.1| pyruvate formate-lyase 1-activating enzyme [Prevotella
           melaninogenica ATCC 25845]
          Length = 269

 Score = 41.5 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 30/126 (23%)

Query: 2   KLYSI--KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFV 55
            +  +   E F ++ G G        +F    GC           + +C++C   DT   
Sbjct: 28  MMLRVHSVESFGSVDGPGIRFV----IF--LKGC-----------AMRCQYCHNPDT--- 67

Query: 56  GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFE 113
                 G   +VD +     +++ +         ++GGE LL  Q    L +     G  
Sbjct: 68  -WDRAGGNLRSVDDVLSQ-AQRYRSYWGTKGGITVSGGEALLQIQPLTELFRKAKALGIN 125

Query: 114 IAVETN 119
             ++T+
Sbjct: 126 TCLDTS 131


>gi|237750926|ref|ZP_04581406.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Helicobacter bilis ATCC 43879]
 gi|229373371|gb|EEO23762.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Helicobacter bilis ATCC 43879]
          Length = 193

 Score = 41.5 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 18/92 (19%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
             GC              C+ C           G   +++ + + I+EQ  +     +  
Sbjct: 23  TQGCP-----------IHCKGCWNTHTW-DSKGGFTMDIESIFNNIKEQKDSKTLPIQAV 70

Query: 89  VLTGGEPL-----LQVDVPLIQALNKRGFEIA 115
            + GGEP      L   V LI++L   G  + 
Sbjct: 71  TILGGEPFYQYDELYKLVSLIKSL-DLGIIVY 101


>gi|229132578|ref|ZP_04261427.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           BDRD-ST196]
 gi|228650924|gb|EEL06910.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           BDRD-ST196]
          Length = 307

 Score = 41.5 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 21/150 (14%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+ D+P LIQ LN+  G E I +
Sbjct: 14  SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRKDLPKLIQRLNEIDGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVSPKAGCDLKIKGGQ----ELKLVFPQVNVSPENYIG 165
            TNG++      D        + VS  +  + +         ++K V   +  + E  + 
Sbjct: 71  TTNGSLLKKFASDLYKAGLSRVTVSLDSLNEERFSYLNGNRSKVKTVLAGIQAAAEAGMK 130

Query: 166 FDFERFSLQPMDGPFLEENTNLAISYCFQN 195
                  +Q   G   ++   +A  Y  +N
Sbjct: 131 IKM-NMVVQ--KGKNEQDIVQMA-EYFKEN 156


>gi|194292677|ref|YP_002008584.1| enzyme, radical sam [Cupriavidus taiwanensis LMG 19424]
 gi|193226581|emb|CAQ72532.1| putative enzyme, Radical SAM [Cupriavidus taiwanensis LMG 19424]
          Length = 390

 Score = 41.5 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 22/120 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +V Q  + ++E             +
Sbjct: 38  CNL-----------ACSGCGKIDY--PDPILNQRLSVQQCLEAVDECG------APVVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
            GGEPLL  D+P ++Q + +R   + + TN  +   + +D    SP     + + G +E+
Sbjct: 79  AGGEPLLHKDMPQIVQGIIERRKFVYLCTN-ALLMEKKLDQYQPSPYFIWSVHLDGDREM 137


>gi|220923213|ref|YP_002498515.1| radical SAM domain-containing protein [Methylobacterium nodulans
           ORS 2060]
 gi|219947820|gb|ACL58212.1| Radical SAM domain protein [Methylobacterium nodulans ORS 2060]
          Length = 351

 Score = 41.5 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 30/130 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C               + +    ++++            VL 
Sbjct: 40  CNLL-----------CETC--PRTFETLEPPADMSWELFTRIVDQVPDVAR-----VVLH 81

Query: 92  G-GEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
           G GEP+L   +P +I+ L  RG  +   TNGT+          ++PK   +L   G  EL
Sbjct: 82  GVGEPMLVKSLPRMIRYLKDRGTYVLFNTNGTL----------MNPKRFQELIDTGLDEL 131

Query: 150 KLVFPQVNVS 159
           ++     + +
Sbjct: 132 RVSLDAADRA 141


>gi|186475582|ref|YP_001857052.1| molybdenum cofactor biosynthesis protein A [Burkholderia phymatum
           STM815]
 gi|184192041|gb|ACC70006.1| molybdenum cofactor biosynthesis protein A [Burkholderia phymatum
           STM815]
          Length = 370

 Score = 41.5 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 25/169 (14%)

Query: 41  DRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
           DR + +C +C                      +++  L       G ++ R   LTGGEP
Sbjct: 45  DRCNFRCVYC-MPRAVFGKDYPFLPHSALLTFEEIERLAAIFVAHGVEKIR---LTGGEP 100

Query: 96  LLQVDVP-LIQALN----KRGFE--IAVETNGTIEP-------PQGIDWICVSPKAGCDL 141
           LL+ ++  LI+ L       G    + + TNG++           G++ + VS  A  D 
Sbjct: 101 LLRKNLEFLIERLARMTTAAGKPLDLTLTTNGSLLARKARSLKDAGLNRVTVSLDALDDA 160

Query: 142 KIKGGQELKLVFPQV--NVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
             +   +       V   +     +G    + ++    G    E   LA
Sbjct: 161 LFRRMNDADFAVSDVLHGIEVAQSVGLAPLKVNMVVKRGTNDSEIVPLA 209


>gi|56413979|ref|YP_151054.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362902|ref|YP_002142539.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|56128236|gb|AAV77742.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094379|emb|CAR59893.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 265

 Score = 41.5 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 46  FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEDLMKEVVTYRHFMNASG 90

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 91  GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 127


>gi|239627654|ref|ZP_04670685.1| formate acetyltransferase activating enzyme [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239517800|gb|EEQ57666.1| formate acetyltransferase activating enzyme [Clostridiales
           bacterium 1_7_47FAA]
          Length = 283

 Score = 41.5 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 40/129 (31%), Gaps = 35/129 (27%)

Query: 24  AVFCRFSGCNLWSGREQD-----------RLSAQCRFC----------DTDFVGIQGTK- 61
            VF    GC L      +           R    C  C          DT  +     + 
Sbjct: 24  TVF--LKGCPLRCMWCHNPEGLSYKPQLMRSGNGCLHCGKCRDACSHPDTCVLCGSCVRA 81

Query: 62  ---------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG- 111
                    G     + LA  + +     E+ G     +GGEPL Q    L++ L + G 
Sbjct: 82  CPKNLIRICGEEVTAEWLAGHLLKDKDYLEQVGGGITFSGGEPLGQPRF-LLECLERLGD 140

Query: 112 FEIAVETNG 120
               +ET+G
Sbjct: 141 VHTCIETSG 149


>gi|157363393|ref|YP_001470160.1| radical SAM domain-containing protein [Thermotoga lettingae TMO]
 gi|157313997|gb|ABV33096.1| Radical SAM domain protein [Thermotoga lettingae TMO]
          Length = 482

 Score = 41.5 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 21/92 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C   + G+ G K      ++++ +I++    G     + V+T
Sbjct: 121 CNL-----------NCVGC---YAGLYGRKYE-LTKEEVSKVIQQANELGIY---FWVIT 162

Query: 92  GGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
           GGEP      + +++  N   F I   TNGT+
Sbjct: 163 GGEPFYWPYLMDILEEFNDNYFLIY--TNGTL 192


>gi|254239854|ref|ZP_04933176.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa 2192]
 gi|126193232|gb|EAZ57295.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa 2192]
          Length = 331

 Score = 41.5 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 32/174 (18%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+          ++++L  + +     G +  R   +TGGEPL+
Sbjct: 23  DRCDFRCTYCMSEDMQFLPRD----QVLSLEELYAVADAFIGLGVRRIR---ITGGEPLV 75

Query: 98  QVDVPLIQALNKRGFEIAVE-----TNGTIEPP-------QGIDWICVSPKAGCDLK--- 142
           +  +     L + G    +E     TNG+            G+  + VS  +    +   
Sbjct: 76  RKGI--TGLLARLGQRAELEDLAITTNGSQLRERAAELKAAGVRRLNVSLDSLQRERFAA 133

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL-AISYCFQN 195
                 L+ V   +  + E      FER  L  +      ++  L  + Y   N
Sbjct: 134 FTRSDRLEQVLDGIQAAREA----GFERIKLNCVVQKGRNDDEILNLVEYALAN 183


>gi|116049449|ref|YP_791748.1| molybdenum cofactor biosynthesis protein A [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296390127|ref|ZP_06879602.1| molybdenum cofactor biosynthesis protein A [Pseudomonas aeruginosa
           PAb1]
 gi|115584670|gb|ABJ10685.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 331

 Score = 41.5 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 63/175 (36%), Gaps = 34/175 (19%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+          ++++L  + +     G +  R   +TGGEPL+
Sbjct: 23  DRCDFRCTYCMSEDMQFLPRD----QVLSLEELYAVADAFIGLGVRRIR---ITGGEPLV 75

Query: 98  QVDVP-LIQALNKRGFEIAVE-----TNGTIEPP-------QGIDWICVSPKAGCDLK-- 142
           +  +  L+  L   G    +E     TNG+            G+  + VS  +    +  
Sbjct: 76  RKGIAGLLARL---GQRAELEDLAITTNGSQLRERAAELKAAGVRRLNVSLDSLQRERFA 132

Query: 143 -IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL-AISYCFQN 195
                  L+ V   +  + E      FER  L  +      ++  L  + Y   N
Sbjct: 133 AFTRSDRLEQVLDGIQAAREA----GFERIKLNCVVQKGRNDDEILDLVEYALAN 183


>gi|307295474|ref|ZP_07575310.1| molybdenum cofactor biosynthesis protein A [Sphingobium
           chlorophenolicum L-1]
 gi|306878513|gb|EFN09733.1| molybdenum cofactor biosynthesis protein A [Sphingobium
           chlorophenolicum L-1]
          Length = 341

 Score = 41.5 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 13/88 (14%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +CR+C          K     ++++A L +     G +  R   LTGGEPL++ D
Sbjct: 33  DRCDLRCRYC-MAERMTFLPKDQVLTLEEIALLADLFIARGVRRIR---LTGGEPLVRRD 88

Query: 101 VPLIQALNKRGF-------EIAVETNGT 121
           +  +  +++ G        E+ + TNGT
Sbjct: 89  I--VDLVHRIGRHVGKGLDEVTLTTNGT 114


>gi|261368899|ref|ZP_05981782.1| putative heme biosynthesis protein [Subdoligranulum variabile DSM
           15176]
 gi|282568997|gb|EFB74532.1| putative heme biosynthesis protein [Subdoligranulum variabile DSM
           15176]
          Length = 445

 Score = 41.5 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 38/76 (50%), Gaps = 7/76 (9%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104
           +C  C   ++          + D++  L ++ +  G  +     LTGGEP ++ D   L+
Sbjct: 111 RCPHC---YMKSGNAYNDELSTDEIKSLCDQFYHAGGTD---VFLTGGEPTVRPDFFELV 164

Query: 105 QALNKRGFEIAVETNG 120
           + +++ G ++++ +NG
Sbjct: 165 EYISRLGMKVSIYSNG 180


>gi|191167604|ref|ZP_03029415.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B7A]
 gi|190902365|gb|EDV62103.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B7A]
          Length = 265

 Score = 41.5 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 46  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 90

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 91  GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 127


>gi|15601942|ref|NP_245014.1| pyruvate formate lyase-activating enzyme 1 [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|12720286|gb|AAK02161.1| Act [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 246

 Score = 41.5 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G    V++L   +     
Sbjct: 21  IRFILFMQGC-----------LMRCQYCHNRDT----WDLHAGKEITVEELMKEVVTYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                G     +GGE +LQ +       A  K G    ++TNG
Sbjct: 66  FMNASGGGVTASGGEAVLQAEFVRDWFSACKKEGIHTCLDTNG 108


>gi|307354671|ref|YP_003895722.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
           DSM 11571]
 gi|307157904|gb|ADN37284.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 443

 Score = 41.5 bits (97), Expect = 0.080,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 35  WSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           +     +R +  C +C +   G +G       +D+    I+E+     ++     + GGE
Sbjct: 91  FCICLTERCNLACSYCGSGERG-RGRSFENETIDRAISFIKEETSASRRKNLNIRVFGGE 149

Query: 95  PLLQ--VDVPLIQALNK------RGFEIAVETNGTI 122
           PLL+  + + L+  L +       GF  A+ TNGT+
Sbjct: 150 PLLEYNILIKLLSELKEWAVSRGTGFYAALITNGTM 185


>gi|218781894|ref|YP_002433212.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218763278|gb|ACL05744.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 340

 Score = 41.5 bits (97), Expect = 0.080,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 22/98 (22%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              CNL            C++C       +G         + A    +       EG + 
Sbjct: 14  TGKCNL-----------ACKYC------YRGEPNNDVMKPEWAKTAIDL-AAASGEGFHI 55

Query: 89  VLTGGEPLLQVD--VPLIQALNKRGFE--IAVETNGTI 122
            +TGGEPLL  D  + L++ + K   +  + ++TNGT+
Sbjct: 56  QITGGEPLLAWDMILKLLEYIQKSKVQASVGLQTNGTL 93


>gi|197118777|ref|YP_002139204.1| L-lysine 2,3-aminomutase [Geobacter bemidjiensis Bem]
 gi|197088137|gb|ACH39408.1| L-lysine 2,3-aminomutase [Geobacter bemidjiensis Bem]
          Length = 344

 Score = 41.5 bits (97), Expect = 0.080,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
           CRFC    +  +G         ++ D I   +I G+   R  VL+GG+PLL  D  L   
Sbjct: 107 CRFC----MRKRGVGCASMAPAKVDDAIA--YIAGDPRIRDVVLSGGDPLLLPDDRLAAI 160

Query: 107 LNKRGFEIAVE 117
           L+       VE
Sbjct: 161 LSALSRIPHVE 171


>gi|49087864|gb|AAT51506.1| PA1505 [synthetic construct]
          Length = 332

 Score = 41.5 bits (97), Expect = 0.080,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 32/174 (18%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+          ++++L  + +     G +  R   +TGGEPL+
Sbjct: 23  DRCDFRCTYCMSEDMQFLPRD----QVLSLEELYAVADAFIGLGVRRIR---ITGGEPLV 75

Query: 98  QVDVPLIQALNKRGFEIAVE-----TNGTIEPP-------QGIDWICVSPKAGCDLK--- 142
           +  +     L + G    +E     TNG+            G+  + VS  +    +   
Sbjct: 76  RKGI--TGLLARLGQRAELEDLAITTNGSQLRERAAELKAAGVRRLNVSLDSLQRERFAA 133

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL-AISYCFQN 195
                 L+ V   +  + E      FER  L  +      ++  L  + Y   N
Sbjct: 134 FTRSDRLEQVLDGIQAAREA----GFERIKLNCVVQKGRNDDEILDLVEYALAN 183


>gi|194335250|ref|YP_002017044.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307727|gb|ACF42427.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 428

 Score = 41.5 bits (97), Expect = 0.080,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C       V    +     +  +  +LI+E    G +E      +
Sbjct: 107 CNLQC--------LHCV------VSAGESVTHDLSTRRCLELIDEWAAIGVQE---ITFS 149

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D+  L  A  +R   I++ TNGT+
Sbjct: 150 GGEPLLREDLFELAAAAKQRNLTISMATNGTL 181


>gi|15596702|ref|NP_250196.1| molybdenum cofactor biosynthesis protein A [Pseudomonas aeruginosa
           PAO1]
 gi|107100939|ref|ZP_01364857.1| hypothetical protein PaerPA_01001969 [Pseudomonas aeruginosa PACS2]
 gi|218892620|ref|YP_002441489.1| molybdenum cofactor biosynthesis protein A [Pseudomonas aeruginosa
           LESB58]
 gi|254234601|ref|ZP_04927924.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa
           C3719]
 gi|313106505|ref|ZP_07792735.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa
           39016]
 gi|24212013|sp|Q9I3K7|MOAA2_PSEAE RecName: Full=Molybdenum cofactor biosynthesis protein A 2
 gi|9947461|gb|AAG04894.1|AE004579_6 molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa PAO1]
 gi|126166532|gb|EAZ52043.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa
           C3719]
 gi|218772848|emb|CAW28658.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa
           LESB58]
 gi|310879237|gb|EFQ37831.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa
           39016]
          Length = 331

 Score = 41.5 bits (97), Expect = 0.080,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 32/174 (18%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+          ++++L  + +     G +  R   +TGGEPL+
Sbjct: 23  DRCDFRCTYCMSEDMQFLPRD----QVLSLEELYAVADAFIGLGVRRIR---ITGGEPLV 75

Query: 98  QVDVPLIQALNKRGFEIAVE-----TNGTIEPP-------QGIDWICVSPKAGCDLK--- 142
           +  +     L + G    +E     TNG+            G+  + VS  +    +   
Sbjct: 76  RKGI--TGLLARLGQRAELEDLAITTNGSQLRERAAELKAAGVRRLNVSLDSLQRERFAA 133

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL-AISYCFQN 195
                 L+ V   +  + E      FER  L  +      ++  L  + Y   N
Sbjct: 134 FTRSDRLEQVLDGIQAAREA----GFERIKLNCVVQKGRNDDEILDLVEYALAN 183


>gi|329768807|ref|ZP_08260238.1| pyruvate formate-lyase 1-activating enzyme [Gemella sanguinis M325]
 gi|328839580|gb|EGF89155.1| pyruvate formate-lyase 1-activating enzyme [Gemella sanguinis M325]
          Length = 263

 Score = 41.5 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 21/102 (20%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLA-DLIEEQWIT 80
           VF  F GC             +C++C   DT    +         V QL  ++++ +   
Sbjct: 37  VF--FQGC-----------MLRCKYCHNPDT--WKMHNPDAKVVTVSQLTNEIVKYRNFF 81

Query: 81  GEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
              EG    ++GGE LLQ+D  + L + L        V+T G
Sbjct: 82  EASEGGGVTVSGGESLLQLDFVLELFRQLKALDINTCVDTCG 123


>gi|303257958|ref|ZP_07343967.1| molybdenum cofactor biosynthesis protein A [Burkholderiales
           bacterium 1_1_47]
 gi|302859301|gb|EFL82383.1| molybdenum cofactor biosynthesis protein A [Burkholderiales
           bacterium 1_1_47]
          Length = 367

 Score = 41.5 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           DR + +CR+C     F            V    ++I    I          LTGGEPLL+
Sbjct: 45  DRCNFRCRYCMPKEKFEKDHCFLSHT-EVLSFEEIIRLAKIFAANGIEKIRLTGGEPLLR 103

Query: 99  VDVP-LIQALNK------RGFEIAVETNG 120
             +  LI+ L+K      +  ++AV TNG
Sbjct: 104 KGIEFLIEELSKLKTWNGKPLDVAVTTNG 132


>gi|299143773|ref|ZP_07036853.1| 4Fe-4S binding domain protein/radical SAM domain protein
           [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518258|gb|EFI41997.1| 4Fe-4S binding domain protein/radical SAM domain protein
           [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 243

 Score = 41.5 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 19/109 (17%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           A+F  F GCNL      +  + +           +      Y+VD+L + +++       
Sbjct: 23  AIF--FQGCNLNCSFCHNPETIK-----IIHSEEENDDIKFYSVDELFEKVKKI------ 69

Query: 84  EGRYCVLT--GGEPLLQVDVPLIQALNK---RGFEIAVETNGTIEPPQG 127
                 +T  GGE  +     LIQ   K       I V+TNG I+    
Sbjct: 70  RPFIVGITTSGGECTIHHKF-LIQFFKKIKTLNLNILVDTNGLIDLSNE 117


>gi|296453934|ref|YP_003661077.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296183365|gb|ADH00247.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 293

 Score = 41.5 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 40/140 (28%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G    +D +   ++   
Sbjct: 71  RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMIKKVDRYK 113

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG------TIEPPQGI 128
              +        +GGE ++Q     +  +     + G    ++T+G      T E  + I
Sbjct: 114 DLFKATHGGITFSGGESMMQP--AFVSRVFHAAKEMGVHTCLDTSGFLNTSYTDEMLEDI 171

Query: 129 DWICVSPKAGCDLKIKGGQE 148
           D +C+       L +K G E
Sbjct: 172 D-LCL-------LDVKSGDE 183


>gi|294794074|ref|ZP_06759211.1| molybdenum cofactor biosynthesis protein A [Veillonella sp. 3_1_44]
 gi|294455644|gb|EFG24016.1| molybdenum cofactor biosynthesis protein A [Veillonella sp. 3_1_44]
          Length = 325

 Score = 41.5 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 21/107 (19%)

Query: 27  CRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            R S    CN             C +C         ++    +VD+  +++      G K
Sbjct: 16  VRLSLTDACNFC-----------CPYC-RPAEITPQSQTQLLSVDEWMNILGAFHHIGVK 63

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGFE--IAVETNGTIEPPQG 127
             R   LTGGEPLL   +  L+  + + G+   I++ TNG++   + 
Sbjct: 64  AVR---LTGGEPLLYPHIEELLGRIKETGWFEDISMTTNGSLLASRA 107


>gi|228939284|ref|ZP_04101877.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228978776|ref|ZP_04139147.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           Bt407]
 gi|228781037|gb|EEM29244.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           Bt407]
 gi|228820479|gb|EEM66511.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 337

 Score = 41.5 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L       G  + R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPD--YAFLKEEL--LLTFDEIERLARLFISMGVNKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           GEPLL+ D+P LI  L K  G + I + TNG
Sbjct: 75  GEPLLRKDLPTLIARLAKLEGLKDIGLTTNG 105


>gi|40063022|gb|AAR37878.1| molybdenum cofactor biosynthesis protein A [uncultured marine
           bacterium 560]
          Length = 331

 Score = 41.5 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 41  DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           D  + +C +C D D      T+    + +++  ++      G  + R   LTGGEPLL+ 
Sbjct: 21  DHCNYRCHYCRDEDH-QTHTTRSEVLSFEEIVKIVRLFAELGVTKVR---LTGGEPLLRR 76

Query: 100 D-VPLIQALNK 109
           D + L + L  
Sbjct: 77  DILDLTRMLGD 87


>gi|228972163|ref|ZP_04132779.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228787647|gb|EEM35610.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
          Length = 333

 Score = 41.5 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L       G  + R   LTG
Sbjct: 18  DRCNFRCTYCMPAEVFGPD--YAFLKEEL--LLTFDEIERLARLFISMGVNKIR---LTG 70

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           GEPLL+ D+P LI  L K  G + I + TNG
Sbjct: 71  GEPLLRKDLPTLIARLAKLEGLKDIGLTTNG 101


>gi|189439555|ref|YP_001954636.1| pyruvate-formate lyase-activating enzyme [Bifidobacterium longum
           DJO10A]
 gi|227546009|ref|ZP_03976058.1| pyruvate-formate lyase-activating enzyme [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|239621935|ref|ZP_04664966.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|317482295|ref|ZP_07941316.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322688884|ref|YP_004208618.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum
           subsp. infantis 157F]
 gi|322690859|ref|YP_004220429.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|189427990|gb|ACD98138.1| Pyruvate-formate lyase-activating enzyme [Bifidobacterium longum
           DJO10A]
 gi|227213643|gb|EEI81492.1| pyruvate-formate lyase-activating enzyme [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|239515126|gb|EEQ54993.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|316916311|gb|EFV37712.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320455715|dbj|BAJ66337.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|320460220|dbj|BAJ70840.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum
           subsp. infantis 157F]
          Length = 293

 Score = 41.5 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 40/140 (28%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G    +D +   ++   
Sbjct: 71  RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMIKKVDRYK 113

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG------TIEPPQGI 128
              +        +GGE ++Q     +  +     + G    ++T+G      T E  + I
Sbjct: 114 DLFKATHGGITFSGGESMMQP--AFVSRVFHAAKEMGVHTCLDTSGFLNTNYTDEMLEDI 171

Query: 129 DWICVSPKAGCDLKIKGGQE 148
           D +C+       L +K G E
Sbjct: 172 D-LCL-------LDVKSGDE 183


>gi|189346205|ref|YP_001942734.1| molybdenum cofactor biosynthesis protein A [Chlorobium limicola DSM
           245]
 gi|189340352|gb|ACD89755.1| molybdenum cofactor biosynthesis protein A [Chlorobium limicola DSM
           245]
          Length = 332

 Score = 41.5 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 21/97 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C ++      + G    +   AD+     I      R    T
Sbjct: 26  CNL-----------RCTYCMSEEHECHSSVGHPDTLKT-ADVALLIRILAGLGVRKIRFT 73

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVE-----TNGTI 122
           GGEPLL+ D+  L++        + +E     TNG +
Sbjct: 74  GGEPLLRNDIAELVRTAKD---TVGIETVSLTTNGVL 107


>gi|170769309|ref|ZP_02903762.1| pyruvate formate-lyase 1-activating enzyme [Escherichia albertii
           TW07627]
 gi|170121961|gb|EDS90892.1| pyruvate formate-lyase 1-activating enzyme [Escherichia albertii
           TW07627]
          Length = 265

 Score = 41.5 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 46  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 90

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 91  GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 127


>gi|160946408|ref|ZP_02093617.1| hypothetical protein PEPMIC_00368 [Parvimonas micra ATCC 33270]
 gi|158447524|gb|EDP24519.1| hypothetical protein PEPMIC_00368 [Parvimonas micra ATCC 33270]
          Length = 480

 Score = 41.5 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
            + + +CR C   F+    + G   N      +I++    G       V+TGGEPLL  +
Sbjct: 131 TKCNFRCRHC---FI-KNNSDGFTMNFLLWKRIIDKLCNQGLTS---VVVTGGEPLLYKE 183

Query: 101 V-PLIQALNKRGFEIAVETNG 120
           + P++  +N +   I + TNG
Sbjct: 184 LTPILNYINDKKLNIHLLTNG 204


>gi|146311079|ref|YP_001176153.1| pyruvate formate lyase-activating enzyme 1 [Enterobacter sp. 638]
 gi|145317955|gb|ABP60102.1| pyruvate formate-lyase activating enzyme [Enterobacter sp. 638]
          Length = 246

 Score = 41.5 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V++L   +          G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEELMKEVVTYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 72  GGVTASGGEAILQAEFVRDWFRACRKEGIHTCLDTNG 108


>gi|147921733|ref|YP_684447.1| arylsulfatase regulator [uncultured methanogenic archaeon RC-I]
 gi|110619843|emb|CAJ35121.1| arylsulfatase regulator [uncultured methanogenic archaeon RC-I]
          Length = 383

 Score = 41.5 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 28/98 (28%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GC            ++C +C               ++D + D++       E        
Sbjct: 12  GCP-----------SKCHYC-----WSSDVNSPVMSLDTVKDIVA---WLKEFRDDNVTF 52

Query: 91  T--GGEPLL------QVDVPLIQA-LNKRGFEIAVETN 119
           T  GGEPLL      +  +PL+Q  L  R    A++TN
Sbjct: 53  TFHGGEPLLAGADFYKKALPLLQKGLKDRHVAFAMQTN 90


>gi|88602396|ref|YP_502574.1| radical SAM family protein [Methanospirillum hungatei JF-1]
 gi|88187858|gb|ABD40855.1| Radical SAM [Methanospirillum hungatei JF-1]
          Length = 495

 Score = 41.5 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 13/101 (12%)

Query: 32  CN-------LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEK 83
           CN       L +    +R +  C FC   F   +        + DQ+ D++         
Sbjct: 92  CNNHKSTTLLANVDLTNRCNLNCSFC---FANARACGYIYEPSYDQIKDMLTILRSEKPT 148

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNGTI 122
                   GGEP L+ D+  +IQ     GF ++ + TNG I
Sbjct: 149 PAPAVQFAGGEPTLREDLFEIIQLAKSLGFMQVQLATNGLI 189


>gi|28901423|ref|NP_801078.1| putative pyruvate formate-lyase 3 activating enzyme [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839557|ref|ZP_01992224.1| putative pyruvate formate-lyase 3-activating enzyme [Vibrio
           parahaemolyticus AQ3810]
 gi|260362976|ref|ZP_05775845.1| glycyl-radical enzyme activating protein family protein [Vibrio
           parahaemolyticus K5030]
 gi|260880263|ref|ZP_05892618.1| glycyl-radical enzyme activating protein family protein [Vibrio
           parahaemolyticus AN-5034]
 gi|28809970|dbj|BAC62911.1| putative pyruvate formate-lyase 3 activating enzyme [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149746915|gb|EDM57903.1| putative pyruvate formate-lyase 3-activating enzyme [Vibrio
           parahaemolyticus AQ3810]
 gi|308092032|gb|EFO41727.1| glycyl-radical enzyme activating protein family protein [Vibrio
           parahaemolyticus AN-5034]
 gi|308112431|gb|EFO49971.1| glycyl-radical enzyme activating protein family protein [Vibrio
           parahaemolyticus K5030]
          Length = 309

 Score = 41.5 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           G     D L +++ +     ++       +GGEPL+Q ++   L + L++     A+E+ 
Sbjct: 110 GEAVKSDDLFEVLMKDKPFYDQSQGGVTFSGGEPLMQPNLVAELAERLHQNHVSTALESC 169

Query: 120 GTIEP 124
             +  
Sbjct: 170 MHVPW 174


>gi|14591248|ref|NP_143325.1| hypothetical protein PH1458 [Pyrococcus horikoshii OT3]
 gi|3257882|dbj|BAA30565.1| 587aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 587

 Score = 41.5 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L +    +R +  C +C   F   +G       ++Q+  ++                TGG
Sbjct: 140 LINIVLTNRCNLSCWYC--FFYAREGEPIYEPTLEQIRMMLRNAKKEHPIGANAVQFTGG 197

Query: 94  EPLLQVDV-PLIQALNKRGF-EIAVETNG 120
           EP L+ D+  +I+   + G+  I + T+G
Sbjct: 198 EPTLRDDLIEIIKIAKEEGYDHIQLNTDG 226


>gi|46190413|ref|ZP_00206457.1| COG1180: Pyruvate-formate lyase-activating enzyme [Bifidobacterium
           longum DJO10A]
 gi|291517070|emb|CBK70686.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium longum
           subsp. longum F8]
          Length = 280

 Score = 41.5 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 40/140 (28%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G    +D +   ++   
Sbjct: 58  RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMIKKVDRYK 100

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG------TIEPPQGI 128
              +        +GGE ++Q     +  +     + G    ++T+G      T E  + I
Sbjct: 101 DLFKATHGGITFSGGESMMQP--AFVSRVFHAAKEMGVHTCLDTSGFLNTNYTDEMLEDI 158

Query: 129 DWICVSPKAGCDLKIKGGQE 148
           D +C+       L +K G E
Sbjct: 159 D-LCL-------LDVKSGDE 170


>gi|331269793|ref|YP_004396285.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum
           BKT015925]
 gi|329126343|gb|AEB76288.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum
           BKT015925]
          Length = 308

 Score = 41.2 bits (96), Expect = 0.082,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 10/113 (8%)

Query: 47  CRFCDTD------FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           C  C T       +       G   ++ ++  +I+        EG    L+GG+P     
Sbjct: 93  CSKCKTYECTNACYNNALKVSGKNMSITEIMKIIKRDLPYYRNEGG-ITLSGGDPTTFQS 151

Query: 101 ---VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
              + L++A        A+ET+ +       ++I V+     D+K     + K
Sbjct: 152 SFALELLKACKDEFINTAIETSMSTSTEIIKEFIPVTDMFLADIKHMDTNKHK 204


>gi|157154815|ref|YP_001462103.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           E24377A]
 gi|301022943|ref|ZP_07186758.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           69-1]
 gi|157076845|gb|ABV16553.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           E24377A]
 gi|294493276|gb|ADE92032.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           IHE3034]
 gi|300397284|gb|EFJ80822.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           69-1]
 gi|315296163|gb|EFU55471.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           16-3]
 gi|324113806|gb|EGC07781.1| pyruvate formate-lyase 1-activating enzyme [Escherichia fergusonii
           B253]
 gi|324116115|gb|EGC10039.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E1167]
          Length = 265

 Score = 41.2 bits (96), Expect = 0.082,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 46  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 90

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 91  GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 127


>gi|117623083|ref|YP_851996.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli APEC
           O1]
 gi|115512207|gb|ABJ00282.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli APEC
           O1]
          Length = 265

 Score = 41.2 bits (96), Expect = 0.082,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 46  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 90

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 91  GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 127


>gi|121594117|ref|YP_986013.1| molybdenum cofactor biosynthesis protein A [Acidovorax sp. JS42]
 gi|120606197|gb|ABM41937.1| GTP cyclohydrolase subunit MoaA [Acidovorax sp. JS42]
          Length = 378

 Score = 41.2 bits (96), Expect = 0.082,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 15/148 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C    V  +  +   ++ +    ++     +      R   LTGGEPLL+ 
Sbjct: 48  DRCNFRCGYCMPKEVFDKHYRYLPHSDLLSFEEITRLARLFMAHGVRKIRLTGGEPLLRK 107

Query: 100 DVP-LIQALNK----RGF--EIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
           D+  L+  L +     G   ++ + TNG+            G+  + VS  +  D   + 
Sbjct: 108 DLENLVAQLAELRTLEGRVPDLTLTTNGSLLARKARALKAAGLRRVTVSLDSLQDDVFRR 167

Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSL 173
             ++      V    E       E   +
Sbjct: 168 MNDVDFPVADVLAGIEAAQAAGLEHIKV 195


>gi|317495598|ref|ZP_07953966.1| pyruvate formate-lyase 1-activating enzyme [Gemella moribillum
           M424]
 gi|316914412|gb|EFV35890.1| pyruvate formate-lyase 1-activating enzyme [Gemella moribillum
           M424]
          Length = 263

 Score = 41.2 bits (96), Expect = 0.083,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 21/102 (20%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL-ADLIEEQWIT 80
           VF  F GC             +C++C   DT    +         V QL  ++++ +   
Sbjct: 37  VF--FQGC-----------MLRCKYCHNPDT--WKMHNPDAKVVTVSQLTKEIVKYRNFF 81

Query: 81  GEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
              EG    ++GGE LLQ+D  + L + L        V+T G
Sbjct: 82  EASEGGGVTVSGGESLLQLDFVLELFRQLKALDINTCVDTCG 123


>gi|222111161|ref|YP_002553425.1| molybdenum cofactor biosynthesis protein a [Acidovorax ebreus TPSY]
 gi|221730605|gb|ACM33425.1| molybdenum cofactor biosynthesis protein A [Acidovorax ebreus TPSY]
          Length = 378

 Score = 41.2 bits (96), Expect = 0.083,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 15/148 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C    V  +  +   ++ +    ++     +      R   LTGGEPLL+ 
Sbjct: 48  DRCNFRCGYCMPKEVFDKHYRYLPHSDLLSFEEITRLARLFMAHGVRKIRLTGGEPLLRK 107

Query: 100 DVP-LIQALNK----RGF--EIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
           D+  L+  L +     G   ++ + TNG+            G+  + VS  +  D   + 
Sbjct: 108 DLENLVAQLAELRTLEGRVPDLTLTTNGSLLARKARALKAAGLRRVTVSLDSLQDDVFRR 167

Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSL 173
             ++      V    E       E   +
Sbjct: 168 MNDVDFPVADVLAGIEAAQAVGLEHIKV 195


>gi|70731475|ref|YP_261216.1| radical SAM domain-containing protein [Pseudomonas fluorescens
           Pf-5]
 gi|68345774|gb|AAY93380.1| radical SAM domain protein [Pseudomonas fluorescens Pf-5]
          Length = 477

 Score = 41.2 bits (96), Expect = 0.083,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 50/135 (37%), Gaps = 41/135 (30%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GCNL            C +C   D D    + + G +  +D     +E        E R
Sbjct: 110 TGCNL-----------SCTYCYKEDLD----KPSAGKKMGLDTAIASVEMLLQESPDEER 154

Query: 87  Y-CVLTGGEPLLQVDVPLIQA--------LNKRGFEIA--VETNGTIEPPQGIDW----- 130
           Y  V  GGEPL   + PLI+A            G  +   + TN T+   + +D+     
Sbjct: 155 YTVVFFGGEPL--SNRPLIEAMVDYCEQRFAAAGKFVEFVMTTNATLLTEEVVDYLNAHR 212

Query: 131 --ICVS---PKAGCD 140
             + VS   PK   D
Sbjct: 213 FGLSVSIDGPKTVHD 227


>gi|328953261|ref|YP_004370595.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328453585|gb|AEB09414.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 359

 Score = 41.2 bits (96), Expect = 0.083,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 45  AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
           A+C FC   F  ++  +    + D+L   ++   +      RY V TGGEPLL   +P
Sbjct: 28  ARCEFC--GFSRLKPQQWVMADPDRLCRGLK---VLARAGVRYIVFTGGEPLLYPHLP 80


>gi|297617592|ref|YP_003702751.1| radical SAM protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145429|gb|ADI02186.1| Radical SAM domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 339

 Score = 41.2 bits (96), Expect = 0.083,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 49  FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQAL 107
           FCD  +           N ++  +LI E    G    +  + +GGEPL+      L    
Sbjct: 14  FCDHCYRDAGLKLSEELNTEEGKELIREIKKAG---FKIMIFSGGEPLMRHDIFELGDYA 70

Query: 108 NKRGFEIAVETNGTI 122
            ++G    + TNGT+
Sbjct: 71  RQQGLRPVLGTNGTL 85


>gi|238752406|ref|ZP_04613883.1| pyruvate formate-lyase 3-activating enzyme [Yersinia rohdei ATCC
           43380]
 gi|238709339|gb|EEQ01580.1| pyruvate formate-lyase 3-activating enzyme [Yersinia rohdei ATCC
           43380]
          Length = 299

 Score = 41.2 bits (96), Expect = 0.083,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           G   ++D   D +        + G    L+GGEP +Q  V   L+Q  ++ G   AVE+
Sbjct: 101 GTPIDIDATMDTLLRDLPFYRRSGGGVTLSGGEPFMQPAVAAELLQRCHQLGIHTAVES 159


>gi|237745124|ref|ZP_04575605.1| predicted protein [Fusobacterium sp. 7_1]
 gi|229432353|gb|EEO42565.1| predicted protein [Fusobacterium sp. 7_1]
          Length = 369

 Score = 41.2 bits (96), Expect = 0.083,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 19/98 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C+ C   +      KG    + +  D+ +      +       + 
Sbjct: 17  CNL-----------RCKHC---YNAKHLKKG----IPETIDIEKTFSNLLKLNPDIITIQ 58

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGI 128
           GGEPLL  ++  LI  L   G ++ + TN T+  P  I
Sbjct: 59  GGEPLLVSNLENLILKLRNMGVQVYITTNATLLTPNRI 96


>gi|116686788|ref|YP_840035.1| radical SAM domain-containing protein [Burkholderia cenocepacia
           HI2424]
 gi|116652503|gb|ABK13142.1| Radical SAM domain protein [Burkholderia cenocepacia HI2424]
          Length = 214

 Score = 41.2 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 25/86 (29%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC           S +C  C   DT       + GG   VD +   +   W++G    
Sbjct: 25  FQGC-----------SIRCPGCISMDT-----WASAGGETTVDAVLAQV-RNWLSGATG- 66

Query: 86  RYCVLTGGEPLLQVD--VPLIQALNK 109
               ++GGEP  Q D  + L+Q L K
Sbjct: 67  --ITISGGEPFDQPDALIHLLQGLRK 90


>gi|288818520|ref|YP_003432868.1| coenzyme PQQ synthesis protein E [Hydrogenobacter thermophilus
           TK-6]
 gi|288787920|dbj|BAI69667.1| coenzyme PQQ synthesis protein E [Hydrogenobacter thermophilus
           TK-6]
 gi|308752110|gb|ADO45593.1| coenzyme PQQ biosynthesis protein E [Hydrogenobacter thermophilus
           TK-6]
          Length = 362

 Score = 41.2 bits (96), Expect = 0.085,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R +  C +C       +         D+   +I E    G     +  +TGGEP ++ D+
Sbjct: 17  RCNMHCWYCYNPQDLNEYAPQKELTTDEWRKVIREAAELG---IIHIHITGGEPTIRQDL 73

Query: 102 P-LIQALNKRGFEIAVETNGTIE--------PPQGIDWICVSPKAGCDLKIKGGQELKLV 152
           P ++Q     G  + + TN T+           +G+D + VS +A          E+K  
Sbjct: 74  PNIVQEAKNCGLYVNLITNITLYDKKYWEELVKKGVDHVQVSFQAHTKDLNDLIGEVKTY 133

Query: 153 FPQVNV 158
             ++ +
Sbjct: 134 EKKLKI 139


>gi|291456554|ref|ZP_06595944.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium breve
           DSM 20213]
 gi|291381831|gb|EFE89349.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium breve
           DSM 20213]
          Length = 280

 Score = 41.2 bits (96), Expect = 0.085,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 40/140 (28%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G    +D +   ++   
Sbjct: 58  RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMIKKVDRYK 100

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG------TIEPPQGI 128
              +        +GGE ++Q     +  +     + G    ++T+G      T E  + I
Sbjct: 101 DLFKATHGGITFSGGESMMQP--AFVSRVFHAAKEMGVHTCLDTSGFLNTNYTDEMLEDI 158

Query: 129 DWICVSPKAGCDLKIKGGQE 148
           D +C+       L +K G E
Sbjct: 159 D-LCL-------LDVKSGDE 170


>gi|167765929|ref|ZP_02437982.1| hypothetical protein CLOSS21_00420 [Clostridium sp. SS2/1]
 gi|167712427|gb|EDS23006.1| hypothetical protein CLOSS21_00420 [Clostridium sp. SS2/1]
 gi|291559826|emb|CBL38626.1| glycyl-radical enzyme activating protein family [butyrate-producing
           bacterium SSC/2]
          Length = 302

 Score = 41.2 bits (96), Expect = 0.085,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 48/145 (33%)

Query: 22  RVAVFCRFSGCNLWS-----------GREQDRLSAQCRFC---------------DTDFV 55
           R  VF    GC L             G+++     +C  C               D   V
Sbjct: 22  RSTVF--LQGCPLRCPWCANPESQTIGKKRMYYEKKCTGCGRCLENCPNHALNVQDGKLV 79

Query: 56  GIQ------------------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
             +                     G   +V+++   +       E+ G    ++GGE  +
Sbjct: 80  CDKKLCTQCGNCQKACLNDAVSFSGIEMSVEEVKQAVLRDRDYYEESGGGVTISGGECFV 139

Query: 98  QVD--VPLIQALNKRGFEIAVETNG 120
           Q D  + L++A  +     AVET G
Sbjct: 140 QFDGLMQLLKAFKEENLHTAVETCG 164


>gi|323700861|ref|ZP_08112773.1| Radical SAM domain protein [Desulfovibrio sp. ND132]
 gi|323460793|gb|EGB16658.1| Radical SAM domain protein [Desulfovibrio desulfuricans ND132]
          Length = 388

 Score = 41.2 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 6/97 (6%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           C L +       +  C+ C            G  +  +   LI+     G       + T
Sbjct: 42  CRLIAWEVTRSCNLACKHC--RAEAHPEPYEGELSTAEAKALIDTFPDVG---SPIIIFT 96

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEPPQG 127
           GGEP++      LI     +G    +  NGT+  P+ 
Sbjct: 97  GGEPMMRHDVYELIAYAKDKGMRCVMAPNGTLITPET 133


>gi|126174286|ref|YP_001050435.1| radical SAM domain-containing protein [Shewanella baltica OS155]
 gi|125997491|gb|ABN61566.1| Radical SAM domain protein [Shewanella baltica OS155]
          Length = 300

 Score = 41.2 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 17/105 (16%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCV 89
           NL +       S +C  CDT           +   Y V+++  ++  Q            
Sbjct: 72  NLNNKPRIRWNSERCSQCDTCLAVCPKQASPKVTHYTVEEILGILHSQR----HFINGIT 127

Query: 90  LTGGEPLLQVDVPLIQALNK--------RGFEIAVETNGTIEPPQ 126
           ++GGE  LQ  +P I AL +              ++TNG++    
Sbjct: 128 VSGGEASLQ--LPFIIALFQGIKASESLSNLSCMLDTNGSLSLTG 170


>gi|283787366|ref|YP_003367231.1| pyruvate formate-lyase 2 activating enzyme [Citrobacter rodentium
           ICC168]
 gi|282950820|emb|CBG90497.1| pyruvate formate-lyase 2 activating enzyme [Citrobacter rodentium
           ICC168]
          Length = 292

 Score = 41.2 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 46/137 (33%), Gaps = 30/137 (21%)

Query: 9   IF----LTLQ-GEGGHAGRVAVFCRFSGCNLWSGR-----------EQDRLSAQCRFC-- 50
           IF     +L  G+G       VF  F GC                 E  R  ++C  C  
Sbjct: 24  IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRESKCLHCVP 78

Query: 51  ---DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
              D D       +  G    +D+L   + +  +     G    L+GGE L+Q       
Sbjct: 79  CLRDADECPSGAFERIGRDVTLDELEREVMKDDVFFRTSGGGVTLSGGEVLMQAPFATRF 138

Query: 104 IQALNKRGFEIAVETNG 120
           +  L +     A+ET G
Sbjct: 139 LHRLRRWDVRCAIETAG 155


>gi|297545376|ref|YP_003677678.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296843151|gb|ADH61667.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 453

 Score = 41.2 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 18/105 (17%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYC 88
           GCN+         S +  +              + + +QL ++I+   +WI      +  
Sbjct: 77  GCNMNCPYCYIPESYRRNY-------------QKMSYNQLEEIIDKLSKWINERGGIKRI 123

Query: 89  VLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           +  GGEPLL  ++  P+I+   K   E  ++TNGT+   +   +I
Sbjct: 124 IFHGGEPLLAKEIFFPIIEKYYKE-IEFGIQTNGTLLTEEDAAFI 167


>gi|56696384|ref|YP_166741.1| pyrroloquinoline quinone biosynthesis protein PqqE [Ruegeria
           pomeroyi DSS-3]
 gi|61214688|sp|Q5LTB4|PQQE_SILPO RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|56678121|gb|AAV94787.1| coenzyme PQQ synthesis protein E [Ruegeria pomeroyi DSS-3]
          Length = 374

 Score = 41.2 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R    C +C          K    +    A   +E    G  +     L+GGEP  + D+
Sbjct: 26  RCPLACPYCSNPLALHG--KARELDTQTWARAFDEAAALGVLQLH---LSGGEPASRPDL 80

Query: 102 -PLIQALNKRGFEIAVETNGTIEPPQGID 129
             L +A ++ G    + T+G    P  +D
Sbjct: 81  VELTRAAHEAGLYTNLITSGIGLTPARLD 109


>gi|326383193|ref|ZP_08204881.1| GTP cyclohydrolase subunit MoaA [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197943|gb|EGD55129.1| GTP cyclohydrolase subunit MoaA [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 335

 Score = 41.2 bits (96), Expect = 0.087,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 11/87 (12%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C    +   G     R  +    +++    +          LTGGEPLL+ 
Sbjct: 25  DRCNLRCTYC----MPADGVPWIPRPELLTSDEIVSLAVVFASLGILEIRLTGGEPLLRP 80

Query: 100 D-VPLIQALN----KRG-FEIAVETNG 120
           D V +++ L     +RG   +++ TNG
Sbjct: 81  DVVDVVRRLAAIEGERGPLRVSITTNG 107


>gi|270261183|ref|ZP_06189456.1| hypothetical protein SOD_a04080 [Serratia odorifera 4Rx13]
 gi|270044667|gb|EFA17758.1| hypothetical protein SOD_a04080 [Serratia odorifera 4Rx13]
          Length = 246

 Score = 41.2 bits (96), Expect = 0.087,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 55/187 (29%), Gaps = 50/187 (26%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G    V++L           
Sbjct: 25  VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKDTVAYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI--------EPPQGIDWI 131
              G     +GGE +LQ +      +A  + G    ++TNG +        E     D +
Sbjct: 68  NASGGGVTASGGEAILQAEFVRDWFRACQQEGINTCLDTNGFVRRYDPVIDELLDATDLV 127

Query: 132 CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191
            +  K   D              Q  V   N+   DF R+          + N    I Y
Sbjct: 128 MLDLKQMND-----------DIHQNLVGVSNHRTLDFARY--------LAKRNQRTWIRY 168

Query: 192 CFQNPKW 198
               P W
Sbjct: 169 VVV-PGW 174


>gi|320007254|gb|ADW02104.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Streptomyces flavogriseus ATCC 33331]
          Length = 339

 Score = 41.2 bits (96), Expect = 0.087,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 38  CNLAC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  +++ L  R   + + TN  +   + ++    SP     + I G +E
Sbjct: 80  GGEPLMHPQIDEIVRQLVARKKYVFLCTN-AMLMRKKLEKFTPSPYFAFAVHIDGLRE 136


>gi|239816028|ref|YP_002944938.1| pyrroloquinoline quinone biosynthesis protein PqqE [Variovorax
           paradoxus S110]
 gi|239802605|gb|ACS19672.1| coenzyme PQQ biosynthesis protein E [Variovorax paradoxus S110]
          Length = 385

 Score = 41.2 bits (96), Expect = 0.087,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R    C FC    DF   +   G     +    ++ E    G  +   C 
Sbjct: 12  PLWLLAELTYRCPLHCVFCFNPVDFAQQENELG----TEDWLRVLREGRELGAVQ---CG 64

Query: 90  LTGGEPLLQVDVPLIQALNKR-GFEIAVETNG 120
           L+GGEPLL+ D+ +I A   R G+   + T+G
Sbjct: 65  LSGGEPLLRDDLEIIIAEAARLGYYTNLLTSG 96


>gi|219669165|ref|YP_002459600.1| radical SAM protein [Desulfitobacterium hafniense DCB-2]
 gi|219539425|gb|ACL21164.1| Radical SAM domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 441

 Score = 41.2 bits (96), Expect = 0.087,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 23/117 (19%)

Query: 31  GCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           GC    G   D              R +  CRFC             R    ++      
Sbjct: 76  GCPYDCGLCADHWKQTCAALLEVTQRCNLNCRFC-----FADAGGSARDPSLEVLTRWFR 130

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGF-EIAVETNGTIEPPQGIDWI 131
           + +          L+GGEP L+ D+P I AL    GF  I V +NG +      D++
Sbjct: 131 KVMEASGPT-NIQLSGGEPTLRDDLPEIVALGKSEGFDFIQVNSNG-LRLAAEKDYV 185


>gi|126660238|ref|ZP_01731354.1| molybdenum cofactor biosynthesis protein A [Cyanothece sp. CCY0110]
 gi|126618477|gb|EAZ89230.1| molybdenum cofactor biosynthesis protein A [Cyanothece sp. CCY0110]
          Length = 247

 Score = 41.2 bits (96), Expect = 0.087,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 13/122 (10%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-P 102
           S  C FC   +         R+  D+L D I++   +G K        GGEPL   ++  
Sbjct: 15  SKHCHFC---YNHSHHLGETRWQADELVDFIKDCAKSGTKA---VSFGGGEPLEYPNLFE 68

Query: 103 LIQALNKRGFEIAVETNGTI---EPPQGIDWICVSPKAGCDLKIK-GGQELKLVFPQVNV 158
           ++  L    F  ++ +NG     +  + +  I    K    +      +E+K V  QV +
Sbjct: 69  VLSELQGVLFR-SITSNGLHLHGDLLEKL-VIANPDKVHLSIHYPEQKEEVKRVINQVKL 126

Query: 159 SP 160
             
Sbjct: 127 LD 128


>gi|91203746|emb|CAJ71399.1| similar to molybdenum cofactor biosynthesis protein A [Candidatus
           Kuenenia stuttgartiensis]
          Length = 355

 Score = 41.2 bits (96), Expect = 0.087,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 15/98 (15%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDV-PL 103
           +C +C  DF+  Q       + D L D + E    G K   Y    G GEPLL  D+  +
Sbjct: 43  RCTYCALDFMEYQ---PRFLDKDVLNDRLSEMASLGLKSIMYA---GEGEPLLHRDIGEI 96

Query: 104 IQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134
           I    K G ++A+ TNG +          + I WI VS
Sbjct: 97  INHTKKVGIDVAITTNGVLLKEGLVGSTLENITWIKVS 134


>gi|210616788|ref|ZP_03291232.1| hypothetical protein CLONEX_03453 [Clostridium nexile DSM 1787]
 gi|210149656|gb|EEA80665.1| hypothetical protein CLONEX_03453 [Clostridium nexile DSM 1787]
          Length = 428

 Score = 41.2 bits (96), Expect = 0.088,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 18/96 (18%)

Query: 29  FSGC-NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
            +GC NL           QC FC T   G Q +      ++++  ++       +   R 
Sbjct: 73  LTGCCNL-----------QCEFC-TMNSGPQVSTKHDLTLEEIRSVL--IPKLMQINPRK 118

Query: 88  CVLTGGEPLLQVDVPLIQALNKRGFE---IAVETNG 120
            V+TGGEPL++ D+  I  L  + FE   I ++TNG
Sbjct: 119 VVITGGEPLMRRDLFEILDLFSQAFEKKCIVLQTNG 154


>gi|13541337|ref|NP_111025.1| tRNA-modifying enzyme [Thermoplasma volcanium GSS1]
 gi|14324721|dbj|BAB59648.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 312

 Score = 41.2 bits (96), Expect = 0.088,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 48/143 (33%), Gaps = 40/143 (27%)

Query: 30  SGC--NLWSGREQDRL----------SAQCRFC------DTDFVGIQGTKG--GRYNVDQ 69
            GC  N + G +  +           +  C FC      D+  +  +         ++ Q
Sbjct: 37  QGCYKNTFYGIKSHQCIQMTPALNACTENCAFCWRFQGFDSMHISDEDDPEFILEESIKQ 96

Query: 70  LADLI----------EEQWITGEKEGRY-CVLTGGEPLLQVDV-PLIQALNKRGFEIAVE 117
              LI          +E W            LTG EP L   +  LI A  KRG    + 
Sbjct: 97  HLKLISGFKGNPKVSKEIWEEATHPKHMAISLTG-EPTLYSRLGELIAAAKKRGISTFLV 155

Query: 118 TNGTIE-PPQGID------WICV 133
           TNGT+    + +D      ++ V
Sbjct: 156 TNGTLPMVLEKLDPLPTQLYVTV 178


>gi|298252712|ref|ZP_06976506.1| pyruvate formate-lyase 1 activating enzyme [Gardnerella vaginalis
           5-1]
 gi|297533076|gb|EFH71960.1| pyruvate formate-lyase 1 activating enzyme [Gardnerella vaginalis
           5-1]
          Length = 293

 Score = 41.2 bits (96), Expect = 0.088,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 28/135 (20%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G    +D +   ++   
Sbjct: 71  RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMIKKVDRYQ 113

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130
              +  G     +GGE ++Q      + +A  + G    ++T+G      T E    ID 
Sbjct: 114 SLFKATGGGITFSGGESMMQPAFVSRVFRAAKEMGVHTCLDTSGFLNRNYTDEMIDDIDL 173

Query: 131 ICVSPKAGCDLKIKG 145
             +  K+G +   K 
Sbjct: 174 CLLDVKSGTEETYKK 188


>gi|92118190|ref|YP_577919.1| radical SAM family protein [Nitrobacter hamburgensis X14]
 gi|91801084|gb|ABE63459.1| Radical SAM [Nitrobacter hamburgensis X14]
          Length = 389

 Score = 41.2 bits (96), Expect = 0.088,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C                R    +  D  EE             + 
Sbjct: 38  CNLAC--------AGCG----KIDYPDAILNRRMTAQECWDAAEECG------APMVAIP 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+  ++  +++ L  R   +++ TN  +   + +D    SP     + + G +E
Sbjct: 80  GGEPLIHKEIGEIVRGLVARKKFVSLCTN-ALLLEKKLDLFEPSPYLFFSVHLDGLKE 136


>gi|325914911|ref|ZP_08177243.1| GTP cyclohydrolase subunit MoaA [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538804|gb|EGD10468.1| GTP cyclohydrolase subunit MoaA [Xanthomonas vesicatoria ATCC
           35937]
          Length = 344

 Score = 41.2 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 16/102 (15%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
           +C +C   D            R + DQL  L+      G  + R   LTGGEPLL+ D+P
Sbjct: 36  RCGYCMPADRVPDDYGFDAQQRLSFDQLETLVRAFVSVGVTKVR---LTGGEPLLRRDLP 92

Query: 103 -LIQALNK-RGFE-IAVETNGTIEPPQ-------GIDWICVS 134
            LI  L    G E +A+ TNG +   Q       G+  I VS
Sbjct: 93  TLITRLTAIAGIEDLALTTNGVLLARQATALRQAGLRRITVS 134


>gi|308272797|emb|CBX29401.1| hypothetical protein N47_J03820 [uncultured Desulfobacterium sp.]
          Length = 338

 Score = 41.2 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 8/105 (7%)

Query: 28  RFSGC--NLWSGREQDRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           R   C  +L   +      ++C  C    D               +D+    I+   +  
Sbjct: 85  RTEKCTEDLRDVKPPIIDRSKCTLCMKCVDVCPQNAITRVSSVMTLDEAFSEIKSDDVFY 144

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
              G    L+GGEPLL     + L++   +     AV+T+G ++ 
Sbjct: 145 RSSGGGMTLSGGEPLLHPKTALALLRLAKENSIHTAVDTSGFLDW 189


>gi|148381132|ref|YP_001255673.1| glycyl-radical activating family protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|148290616|emb|CAL84745.1| putative pyruvate formate-lyase 2 activating enzyme [Clostridium
           botulinum A str. ATCC 3502]
          Length = 252

 Score = 41.2 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 43  LSAQCRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
              +C FC   T+F      +  G      ++   I +  +  E+       +GGEP+L 
Sbjct: 32  DEGKCNFCGKCTNFCPNNAREYVGKDLTPQEIIKEIIKDEVFYEQSSGGVTFSGGEPMLH 91

Query: 99  VDVP--LIQALNKRGFEIAVETNG 120
            D    +++    RG    ++T+G
Sbjct: 92  ADFINGILEECKVRGIHTTIDTSG 115


>gi|95928293|ref|ZP_01311041.1| Methyltransferase type 11 [Desulfuromonas acetoxidans DSM 684]
 gi|95135564|gb|EAT17215.1| Methyltransferase type 11 [Desulfuromonas acetoxidans DSM 684]
          Length = 1000

 Score = 41.2 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 39/105 (37%), Gaps = 25/105 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA--DLIEEQWITGEKEGRYCV 89
           CNL            C F             G  + D+LA  ++I       E   R   
Sbjct: 91  CNLSC--------RHCLF-----------TSGPNSQDELATGEIIRRVDEASELGCRVFA 131

Query: 90  LTGGEPLLQVDVPLI--QALNKRGFEIAVETNG-TI-EPPQGIDW 130
           LTGGEP +  D   I    LN     +AV TNG T+     GIDW
Sbjct: 132 LTGGEPFVHPDFADIVRHILNTPSHHVAVLTNGMTLSHQLNGIDW 176


>gi|315649901|ref|ZP_07902983.1| molybdenum cofactor biosynthesis protein A [Paenibacillus vortex
           V453]
 gi|315274700|gb|EFU38082.1| molybdenum cofactor biosynthesis protein A [Paenibacillus vortex
           V453]
          Length = 334

 Score = 41.2 bits (96), Expect = 0.090,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C     G++     +  + +++A ++      G  + R   LTGGEPL++ 
Sbjct: 22  DRCNLRCVYC-MPEEGMEFQPHDQIMSYEEIAAILRVLAPMGVSKVR---LTGGEPLVRK 77

Query: 100 DVP-LIQALNK-RGFE-IAVETNGTIEPPQG 127
           D+  L++ +    G + I++ TNG + P + 
Sbjct: 78  DLENLVRMIASIEGIQDISLTTNGIMLPSKA 108


>gi|282936076|gb|ADB04295.1| putative naphthyl-2-methyl-succinate synthase activating enzyme
           [bacterium enrichment culture clone N47]
          Length = 338

 Score = 41.2 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 8/105 (7%)

Query: 28  RFSGC--NLWSGREQDRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           R   C  +L   +      ++C  C    D               +D+    I+   +  
Sbjct: 85  RTEKCTEDLRDVKPPIIDRSKCTLCMKCVDVCPQNAITRVSSVMTLDEAFSEIKSDDVFY 144

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
              G    L+GGEPLL     + L++   +     AV+T+G ++ 
Sbjct: 145 RSSGGGMTLSGGEPLLHPKTALALLRLAKENSIHTAVDTSGFLDW 189


>gi|193212999|ref|YP_001998952.1| molybdenum cofactor biosynthesis protein A [Chlorobaculum parvum
           NCIB 8327]
 gi|193086476|gb|ACF11752.1| molybdenum cofactor biosynthesis protein A [Chlorobaculum parvum
           NCIB 8327]
          Length = 333

 Score = 41.2 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C    +  +     + +       +    +  +   R    T
Sbjct: 31  CNL-----------RCTYC----LKNEEDADRKIDQLDADQTVAVIEVLAQMGIRKVRFT 75

Query: 92  GGEPLLQVDV-PLIQALNK-RGF-EIAVETNG 120
           GGEPLL  D+  L++      G   +   TNG
Sbjct: 76  GGEPLLHPDIVELVRRAKATPGIDTVKFTTNG 107


>gi|152986331|ref|YP_001349180.1| molybdenum cofactor biosynthesis protein A [Pseudomonas aeruginosa
           PA7]
 gi|150961489|gb|ABR83514.1| molybdenum cofactor biosynthesis protein A [Pseudomonas aeruginosa
           PA7]
          Length = 331

 Score = 41.2 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 62/175 (35%), Gaps = 34/175 (19%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+          ++++L  + +     G +  R   +TGGEPL+
Sbjct: 23  DRCDFRCTYCMSEDMQFLPRD----QVLSLEELYAVADAFIGLGVRRIR---ITGGEPLV 75

Query: 98  QVDVP-LIQALNKRGFEIAVE-----TNGTIEPP-------QGIDWICV---SPKAGCDL 141
           +  +  L+  L   G    +E     TNG+            G+  + V   S +     
Sbjct: 76  RKGIAGLLARL---GQRPELEDLAITTNGSQLRERAGELKAAGVRRLNVSLDSLRRERFA 132

Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL-AISYCFQN 195
                  L+ V   +  + E      FER  L  +      ++  L  + Y   N
Sbjct: 133 AFTRSDRLEQVLDGIQAAREA----GFERIKLNCVVQKGRNDDEILDLVEYALAN 183


>gi|91788157|ref|YP_549109.1| molybdenum cofactor biosynthesis protein A [Polaromonas sp. JS666]
 gi|91697382|gb|ABE44211.1| GTP cyclohydrolase subunit MoaA [Polaromonas sp. JS666]
          Length = 375

 Score = 41.2 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 33/138 (23%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +   +    + +++  L +     G ++ R   LTGGE
Sbjct: 49  DRCNFRCSYCMPREVFDKDYAFL--PQSSLLSFEEITRLAKIFVAHGVEKIR---LTGGE 103

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS------ 134
           PLL+  +  LI+ L K      R  +I + TN ++           G+  + VS      
Sbjct: 104 PLLRKHLEVLIEMLAKLQTPDGRPLDITLTTNASLLAKKAQALKDAGLQRVTVSLDGLDD 163

Query: 135 --PKAGCDLKIKGGQELK 150
              +   D+       LK
Sbjct: 164 ATFRRMNDVDFPVADVLK 181


>gi|296242661|ref|YP_003650148.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermosphaera aggregans DSM 11486]
 gi|296095245|gb|ADG91196.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermosphaera aggregans DSM 11486]
          Length = 253

 Score = 41.2 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 29/106 (27%)

Query: 29  FSGCNLWSGREQDRLSAQ-----CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           F GCNL      +   A+     CR+                 +D++ + +    +  + 
Sbjct: 28  FCGCNLKCPFCHNWRLAENDPGVCRW---------------ITIDEIVESLSTSLMFIDY 72

Query: 84  EGRYCVLTGGEPLLQVDVPLIQALNKRGFEI----AVETNGTIEPP 125
                 +TGGEPLLQ    L +   + G  +    ++ TN T++ P
Sbjct: 73  LH----VTGGEPLLQ-WASLFKLFQEAGNSLGVKRSLNTNMTLKEP 113


>gi|294636920|ref|ZP_06715247.1| pyruvate formate-lyase 1-activating enzyme [Edwardsiella tarda ATCC
           23685]
 gi|291089873|gb|EFE22434.1| pyruvate formate-lyase 1-activating enzyme [Edwardsiella tarda ATCC
           23685]
          Length = 246

 Score = 41.2 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V++L              G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKDTVTYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A    G    ++TNG
Sbjct: 72  GGVTASGGEAMLQAEFVRDWFRACKAEGIHTCLDTNG 108


>gi|283852323|ref|ZP_06369594.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfovibrio sp. FW1012B]
 gi|283572280|gb|EFC20269.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfovibrio sp. FW1012B]
          Length = 232

 Score = 41.2 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 35/126 (27%), Gaps = 32/126 (25%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY-- 87
            GC              C +C                     D          + G    
Sbjct: 28  QGCP-----------WGCPYC-------HNEPLREITDRTERDGASVLAWLAGRRGLLDA 69

Query: 88  CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDL 141
            V +GGEP LQ  +  ++ A+   GF++ + T G             DW+      G D+
Sbjct: 70  VVFSGGEPTLQEGLGGMLGAVRDLGFKVGLHTTGMFPQALERVLPLCDWV------GLDI 123

Query: 142 KIKGGQ 147
           K     
Sbjct: 124 KAPRAD 129


>gi|159904713|ref|YP_001548375.1| molybdenum cofactor biosynthesis protein A [Methanococcus
           maripaludis C6]
 gi|226704823|sp|A9A661|MOAA_METM6 RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|159886206|gb|ABX01143.1| molybdenum cofactor biosynthesis protein A [Methanococcus
           maripaludis C6]
          Length = 298

 Score = 41.2 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 28/119 (23%)

Query: 28  RFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           R S    CNL           +C +C     G     G   + D++  +++      E  
Sbjct: 13  RLSITPKCNL-----------KCFYC--HKEGRNEEHGKLMSADEIVKIVKSSL---EFG 56

Query: 85  GRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNGTI-------EPPQGIDWICVS 134
            R   ++GGEPLL+ D+P +I+ +     + I++ TNG +           G+D + VS
Sbjct: 57  VRKIKISGGEPLLRTDLPKIIENIKDDQIKDISLTTNGILLEKYAQKLKDAGLDRVNVS 115


>gi|89894729|ref|YP_518216.1| hypothetical protein DSY1983 [Desulfitobacterium hafniense Y51]
 gi|89334177|dbj|BAE83772.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 437

 Score = 41.2 bits (96), Expect = 0.092,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 23/117 (19%)

Query: 31  GCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           GC    G   D              R +  CRFC             R    ++      
Sbjct: 72  GCPYDCGLCADHWKQTCAALLEVTQRCNLNCRFC-----FADAGGSARDPSLEVLTRWFR 126

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGF-EIAVETNGTIEPPQGIDWI 131
           + +          L+GGEP L+ D+P I AL    GF  I V +NG +      D++
Sbjct: 127 KVMEASGPT-NIQLSGGEPTLRDDLPEIVALGKSEGFDFIQVNSNG-LRLAAEKDYV 181


>gi|299133453|ref|ZP_07026647.1| hopanoid biosynthesis associated radical SAM protein HpnH [Afipia
           sp. 1NLS2]
 gi|298591289|gb|EFI51490.1| hopanoid biosynthesis associated radical SAM protein HpnH [Afipia
           sp. 1NLS2]
          Length = 396

 Score = 41.2 bits (96), Expect = 0.093,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C                R +  +  D  EE             + 
Sbjct: 38  CNLAC--------AGCG----KIDYPDAILNRRMSAQECWDAAEECG------APMVAIP 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+  ++  +++ L  R   +++ TN  +   + +D    SP     + + G +E
Sbjct: 80  GGEPLIHKEIGEIVRGLVARKKFVSLCTN-ALLLEKKLDLFEPSPYLFFSVHLDGLKE 136


>gi|331651920|ref|ZP_08352939.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M718]
 gi|331050198|gb|EGI22256.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M718]
          Length = 255

 Score = 41.2 bits (96), Expect = 0.094,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 36  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 80

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 81  GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 117


>gi|283853117|ref|ZP_06370372.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
 gi|283571515|gb|EFC19520.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
          Length = 453

 Score = 41.2 bits (96), Expect = 0.094,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 18/91 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C   F            V  LAD      I          L+
Sbjct: 102 CNL-----------ACPVC---FARSGEAPAPDPTVGALADRFAR--IFAATGPVNVQLS 145

Query: 92  GGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
           GGEP ++ D+P ++ A    GF  + V TNG
Sbjct: 146 GGEPTVRADLPAVVAACRAAGFAFVQVNTNG 176


>gi|78185836|ref|YP_378270.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp.
           CC9902]
 gi|123580926|sp|Q3AVP9|MOAA_SYNS9 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|78170130|gb|ABB27227.1| GTP cyclohydrolase subunit MoaA [Synechococcus sp. CC9902]
          Length = 345

 Score = 41.2 bits (96), Expect = 0.094,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 42/124 (33%), Gaps = 34/124 (27%)

Query: 27  CRF---SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            R    + CNL            C +C                   L D +    +    
Sbjct: 18  LRLSLTARCNL-----------ACPYC-----CPDSRDPEGM--LDLQDQLRLIRVACSL 59

Query: 84  EGRYCVLTGGEPLLQV-DVPLIQAL---NKRGF-EIAVETNGTIEPPQ--------GIDW 130
                 LTGGEPLL     PL+ A+      G  E+A+ TNG +  P+        G+D 
Sbjct: 60  GVHTVRLTGGEPLLSDRLEPLLAAIALDRPAGLKELALTTNGVLLSPERALRLKCAGLDR 119

Query: 131 ICVS 134
           I +S
Sbjct: 120 ITIS 123


>gi|315925471|ref|ZP_07921682.1| radical SAM domain protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621372|gb|EFV01342.1| radical SAM domain protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 475

 Score = 41.2 bits (96), Expect = 0.095,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 16/98 (16%)

Query: 31  GCNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEG 85
           GCN+      D  SA    C  C           G + N+  D++ D+IE+    G    
Sbjct: 103 GCNVPWAILLDPTSACNLHCTGC------WAAEYGNKLNLTFDEIDDIIEQGKQLGVFMY 156

Query: 86  RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE-TNGTI 122
              + TGGEPL++ D  LI+   K      +  TNGT+
Sbjct: 157 ---IYTGGEPLVRRDD-LIKLCEKHSDCTFLSFTNGTL 190


>gi|289596878|ref|YP_003483574.1| molybdenum cofactor biosynthesis protein A [Aciduliprofundum boonei
           T469]
 gi|289534665|gb|ADD09012.1| molybdenum cofactor biosynthesis protein A [Aciduliprofundum boonei
           T469]
          Length = 308

 Score = 41.2 bits (96), Expect = 0.095,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 37/118 (31%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C     G           D++  +++   I  E + R    T
Sbjct: 20  CNL-----------NCFYC--HREGEWHRHHSEMTPDEIERILK---IARELDIRKVKFT 63

Query: 92  GGEPLLQVDV--------PLIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134
           GGEPL + D+        PL+        ++++ TNGT+           G+D + VS
Sbjct: 64  GGEPLCRNDIVEIVLKSAPLMDR------DVSLTTNGTLLSKYAYELKEVGLDRVNVS 115


>gi|75392923|sp|Q84F14|HPDA_CLODI RecName: Full=4-hydroxyphenylacetate decarboxylase activating
           enzyme; Short=Hpd-AE
 gi|28300943|emb|CAD65891.1| HpdA protein [Clostridium difficile]
          Length = 316

 Score = 41.2 bits (96), Expect = 0.095,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           Y VD+L  +I+       +       +GGEPLLQ +    ++   ++     A+ET+
Sbjct: 117 YTVDELVQVIKRD-SNNWRSNGGVTFSGGEPLLQHEFLHEVLLKCHEVNVHTAIETS 172


>gi|27461256|gb|AAM54729.1| glycerol dehydratase activator [Clostridium butyricum]
          Length = 304

 Score = 41.2 bits (96), Expect = 0.095,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           +G  Y+V+ +   +++  +   +      L+GGE LLQ D  V L++     G+  A+ET
Sbjct: 104 EGRNYSVEDVIKELKKDSVQYRRSNGGITLSGGEVLLQPDFAVELLKECKSYGWHTAIET 163


>gi|22298906|ref|NP_682153.1| molybdenum cofactor biosynthesis protein A [Thermosynechococcus
           elongatus BP-1]
 gi|22295087|dbj|BAC08915.1| molybdenum cofactor biosynthesis protein A [Thermosynechococcus
           elongatus BP-1]
          Length = 332

 Score = 41.2 bits (96), Expect = 0.095,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 12/90 (13%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR + +C +C   D  F+  Q          + A ++ E    G +  R   LTGGEPLL
Sbjct: 40  DRCNLRCMYCMPVDAAFMPPQTY----LTPTEYATIVAELVELGIESVR---LTGGEPLL 92

Query: 98  QVDV-PLIQALNKRGF-EIAVETNGTIEPP 125
           + +   ++ AL   G  ++++ TNG    P
Sbjct: 93  RAEFAEIVAALVAAGVPQLSLTTNGIRLVP 122


>gi|332158286|ref|YP_004423565.1| molybdenum cofactor biosynthesis protein A [Pyrococcus sp. NA2]
 gi|331033749|gb|AEC51561.1| molybdenum cofactor biosynthesis protein A [Pyrococcus sp. NA2]
          Length = 306

 Score = 41.2 bits (96), Expect = 0.095,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 18/91 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C       QG        D++  +++   I      R   LT
Sbjct: 21  CNL-----------SCFYC---HREGQGEGEREMTADEIERIVK---IASRLGIRKVKLT 63

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
           GGEP ++ D + +++ +     ++++ TNGT
Sbjct: 64  GGEPTIRKDIIEIVRKIRPYVVDLSLTTNGT 94


>gi|170681252|ref|YP_001744269.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           SMS-3-5]
 gi|170518970|gb|ACB17148.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           SMS-3-5]
          Length = 246

 Score = 41.2 bits (96), Expect = 0.095,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 72  GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 108


>gi|189425044|ref|YP_001952221.1| methyltransferase type 11 [Geobacter lovleyi SZ]
 gi|189421303|gb|ACD95701.1| Methyltransferase type 11 [Geobacter lovleyi SZ]
          Length = 1000

 Score = 41.2 bits (96), Expect = 0.095,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 58/171 (33%), Gaps = 33/171 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          + C F           +G + ++ QL   I++    G    R   LT
Sbjct: 91  CNLSC--------SHCLF------SSGPDQGRQLSLQQLKQHIDDAAAQG---CRLFALT 133

Query: 92  GGEPLLQVDV-PLI-QALNKRGFEIAVETNG-TIEPPQGIDW--------ICVSPKAGCD 140
           GGEPL+  D   LI   L      IAV TNG ++      DW        I +  +    
Sbjct: 134 GGEPLVHPDFAELIGHILAIPDSRIAVLTNGLSVADKLAADWPRQRIHLQISLDGRPEHH 193

Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191
             ++G    K +  Q+      ++      F+L          +    + Y
Sbjct: 194 DLLRGAGSFKQLEQQL-----TWLQQQHWHFTLSCCVTKENARDLTWLVDY 239


>gi|21227495|ref|NP_633417.1| molybdenum cofactor biosynthesis protein A [Methanosarcina mazei
           Go1]
 gi|24211981|sp|Q8PX29|MOAA_METMA RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|20905871|gb|AAM31089.1| Molybdenum cofactor biosynthesis protein A [Methanosarcina mazei
           Go1]
          Length = 334

 Score = 41.2 bits (96), Expect = 0.095,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 21/111 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL      +   A+C  C        G  G   + + +  +I E     +   R    +
Sbjct: 40  CNLSCMYCHN-EGAECCTC--------GPVGNEMSPELICSIIRE---AAKFGVRKVKFS 87

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134
           GGEPL + D   I A      E++  TNG        T++   G+D I VS
Sbjct: 88  GGEPLFRKDFEDILACLPPLKEVSATTNGILLEKRAKTLKA-AGLDRINVS 137


>gi|148259214|ref|YP_001233341.1| radical SAM domain-containing protein [Acidiphilium cryptum JF-5]
 gi|146400895|gb|ABQ29422.1| Radical SAM domain protein [Acidiphilium cryptum JF-5]
          Length = 579

 Score = 41.2 bits (96), Expect = 0.095,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 14/89 (15%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         S +      D +      G R  +D+ AD   E    G        LT
Sbjct: 309 CNLACEGCYIESSPRN-----DRLAWLRLDGFRRVLDEAADRHPELREIG--------LT 355

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETN 119
           GGEP +  D+  LI     RG+ + V TN
Sbjct: 356 GGEPFMNPDIEALIGMALDRGYRVLVLTN 384


>gi|303328447|ref|ZP_07358884.1| putative pyruvate formate-lyase activating enzyme [Desulfovibrio
           sp. 3_1_syn3]
 gi|302861441|gb|EFL84378.1| putative pyruvate formate-lyase activating enzyme [Desulfovibrio
           sp. 3_1_syn3]
          Length = 306

 Score = 41.2 bits (96), Expect = 0.096,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
           G  Y++D++   I++  +     G    L+GGE L Q    V L       G   A+ET+
Sbjct: 102 GREYSLDEVLVRIKKDMLFYRNSGGGVTLSGGEVLSQHAFAVELCGRCAALGIHTAIETS 161

Query: 120 G 120
           G
Sbjct: 162 G 162


>gi|292491348|ref|YP_003526787.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Nitrosococcus halophilus Nc4]
 gi|291579943|gb|ADE14400.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Nitrosococcus halophilus Nc4]
          Length = 371

 Score = 41.2 bits (96), Expect = 0.096,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C          +     R +V +  D ++E             + 
Sbjct: 38  CNLAC--------AGCG----KIDHPEEILNKRLSVQECLDAVDECG------APIVSIP 79

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPLL  ++P +++ + +R   + + TN  +   +  D+   SP     + + G +E
Sbjct: 80  GGEPLLHKEMPEIVEGIIQRKKFVYLCTNALLLAKRLKDY-TPSPYLTFSVHLDGNRE 136


>gi|253559429|gb|ACT32393.1| coenzyme PQQ biosynthesis protein PqqE [Pseudomonas fluorescens]
          Length = 389

 Score = 41.2 bits (96), Expect = 0.096,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C          +G   + +Q   +  E    G  +  +   +
Sbjct: 23  PLWLLAELTYRCPLQCPYCSNPLDF--AEQGKELSTEQWFKVFREAREMGAAQLGF---S 77

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    + GF   + T+G
Sbjct: 78  GGEPLVRQDLAELIGEARRLGFYTNLITSG 107


>gi|210060915|pdb|3C8F|A Chain A, 4fe-4s-Pyruvate Formate-Lyase Activating Enzyme With
           Partially Disordered Adomet
 gi|210060916|pdb|3CB8|A Chain A, 4fe-4s-Pyruvate Formate-Lyase Activating Enzyme In Complex
           With Adomet And A Peptide Substrate
          Length = 245

 Score = 41.2 bits (96), Expect = 0.096,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 26  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 70

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 71  GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 107


>gi|187734201|ref|YP_001880903.1| pyruvate formate lyase-activating enzyme 1 [Shigella boydii CDC
           3083-94]
 gi|227884133|ref|ZP_04001938.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 83972]
 gi|237707110|ref|ZP_04537591.1| pyruvate formate-lyase 1 activating enzyme [Escherichia sp.
           3_2_53FAA]
 gi|293404208|ref|ZP_06648202.1| pflA [Escherichia coli FVEC1412]
 gi|293414182|ref|ZP_06656831.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B185]
 gi|293433199|ref|ZP_06661627.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B088]
 gi|298379988|ref|ZP_06989593.1| pflA [Escherichia coli FVEC1302]
 gi|300816995|ref|ZP_07097214.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           107-1]
 gi|300823641|ref|ZP_07103768.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           119-7]
 gi|300901670|ref|ZP_07119730.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           198-1]
 gi|300902940|ref|ZP_07120885.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           84-1]
 gi|300921063|ref|ZP_07137448.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           115-1]
 gi|300929596|ref|ZP_07145058.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           187-1]
 gi|300937598|ref|ZP_07152408.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           21-1]
 gi|300949737|ref|ZP_07163715.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           116-1]
 gi|300955451|ref|ZP_07167825.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           175-1]
 gi|300978474|ref|ZP_07174289.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           45-1]
 gi|300983149|ref|ZP_07176463.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           200-1]
 gi|301047840|ref|ZP_07194891.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           185-1]
 gi|301302491|ref|ZP_07208622.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           124-1]
 gi|301325772|ref|ZP_07219222.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           78-1]
 gi|301643421|ref|ZP_07243469.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           146-1]
 gi|309795288|ref|ZP_07689706.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           145-7]
 gi|331641428|ref|ZP_08342563.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H736]
 gi|331672441|ref|ZP_08373231.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA280]
 gi|331676690|ref|ZP_08377386.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H591]
 gi|26107327|gb|AAN79510.1|AE016758_114 Pyruvate formate-lyase 1 activating enzyme [Escherichia coli
           CFT073]
 gi|91071577|gb|ABE06458.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli UTI89]
 gi|187431193|gb|ACD10467.1| pyruvate formate-lyase 1-activating enzyme [Shigella boydii CDC
           3083-94]
 gi|226898320|gb|EEH84579.1| pyruvate formate-lyase 1 activating enzyme [Escherichia sp.
           3_2_53FAA]
 gi|227838885|gb|EEJ49351.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 83972]
 gi|291324018|gb|EFE63440.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B088]
 gi|291428794|gb|EFF01819.1| pflA [Escherichia coli FVEC1412]
 gi|291434240|gb|EFF07213.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B185]
 gi|298279686|gb|EFI21194.1| pflA [Escherichia coli FVEC1302]
 gi|300300299|gb|EFJ56684.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           185-1]
 gi|300306983|gb|EFJ61503.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           200-1]
 gi|300317674|gb|EFJ67458.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           175-1]
 gi|300354963|gb|EFJ70833.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           198-1]
 gi|300405082|gb|EFJ88620.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           84-1]
 gi|300409651|gb|EFJ93189.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           45-1]
 gi|300411986|gb|EFJ95296.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           115-1]
 gi|300450885|gb|EFK14505.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           116-1]
 gi|300457377|gb|EFK20870.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           21-1]
 gi|300462433|gb|EFK25926.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           187-1]
 gi|300523841|gb|EFK44910.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           119-7]
 gi|300530347|gb|EFK51409.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           107-1]
 gi|300842330|gb|EFK70090.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           124-1]
 gi|300847444|gb|EFK75204.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           78-1]
 gi|301078135|gb|EFK92941.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           146-1]
 gi|308120938|gb|EFO58200.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           145-7]
 gi|315257942|gb|EFU37910.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           85-1]
 gi|315287536|gb|EFU46947.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           110-3]
 gi|315291232|gb|EFU50592.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           153-1]
 gi|324009847|gb|EGB79066.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           57-2]
 gi|324012960|gb|EGB82179.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           60-1]
 gi|324019090|gb|EGB88309.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           117-3]
 gi|331038226|gb|EGI10446.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H736]
 gi|331070347|gb|EGI41712.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA280]
 gi|331075379|gb|EGI46677.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H591]
 gi|332104545|gb|EGJ07891.1| pyruvate formate-lyase 1 activating enzyme [Shigella sp. D9]
          Length = 255

 Score = 41.2 bits (96), Expect = 0.096,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 36  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 80

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 81  GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 117


>gi|15800763|ref|NP_286777.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           O157:H7 EDL933]
 gi|15830239|ref|NP_309012.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           O157:H7 str. Sakai]
 gi|16128869|ref|NP_415422.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
           K-12 substr. MG1655]
 gi|30062437|ref|NP_836608.1| pyruvate formate lyase-activating enzyme 1 [Shigella flexneri 2a
           str. 2457T]
 gi|56479766|ref|NP_706820.2| pyruvate formate lyase-activating enzyme 1 [Shigella flexneri 2a
           str. 301]
 gi|74311458|ref|YP_309877.1| pyruvate formate lyase-activating enzyme 1 [Shigella sonnei Ss046]
 gi|82544640|ref|YP_408587.1| pyruvate formate lyase-activating enzyme 1 [Shigella boydii Sb227]
 gi|82777578|ref|YP_403927.1| pyruvate formate lyase-activating enzyme 1 [Shigella dysenteriae
           Sd197]
 gi|89107752|ref|AP_001532.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
           K-12 substr. W3110]
 gi|110641099|ref|YP_668829.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli 536]
 gi|110804910|ref|YP_688430.1| pyruvate formate lyase-activating enzyme 1 [Shigella flexneri 5
           str. 8401]
 gi|157160424|ref|YP_001457742.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli HS]
 gi|161486262|ref|NP_752967.2| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           CFT073]
 gi|162138459|ref|YP_539989.2| pyruvate formate lyase-activating enzyme 1 [Escherichia coli UTI89]
 gi|168752115|ref|ZP_02777137.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4113]
 gi|168756994|ref|ZP_02782001.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4401]
 gi|168762963|ref|ZP_02787970.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4501]
 gi|168769896|ref|ZP_02794903.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4486]
 gi|168776246|ref|ZP_02801253.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4196]
 gi|168783813|ref|ZP_02808820.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4076]
 gi|168787331|ref|ZP_02812338.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC869]
 gi|168801415|ref|ZP_02826422.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC508]
 gi|170020696|ref|YP_001725650.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli ATCC
           8739]
 gi|170080560|ref|YP_001729880.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
           K-12 substr. DH10B]
 gi|188492165|ref|ZP_02999435.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 53638]
 gi|191172048|ref|ZP_03033592.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli F11]
 gi|193064616|ref|ZP_03045695.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E22]
 gi|193070729|ref|ZP_03051664.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           E110019]
 gi|194428375|ref|ZP_03060916.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B171]
 gi|194434403|ref|ZP_03066666.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae
           1012]
 gi|194438701|ref|ZP_03070788.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 101-1]
 gi|195939563|ref|ZP_03084945.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208805965|ref|ZP_03248302.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4206]
 gi|208815370|ref|ZP_03256549.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4045]
 gi|208822382|ref|ZP_03262701.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4042]
 gi|209400841|ref|YP_002269574.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4115]
 gi|209918152|ref|YP_002292236.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli SE11]
 gi|215486027|ref|YP_002328458.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217324861|ref|ZP_03440945.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. TW14588]
 gi|218548419|ref|YP_002382210.1| pyruvate formate lyase-activating enzyme 1 [Escherichia fergusonii
           ATCC 35469]
 gi|218553488|ref|YP_002386401.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli IAI1]
 gi|218557807|ref|YP_002390720.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli S88]
 gi|218688742|ref|YP_002396954.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli ED1a]
 gi|218694375|ref|YP_002402042.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli 55989]
 gi|218700580|ref|YP_002408209.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli IAI39]
 gi|218704329|ref|YP_002411848.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           UMN026]
 gi|238900160|ref|YP_002925956.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           BW2952]
 gi|253774069|ref|YP_003036900.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161016|ref|YP_003044124.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli B str.
           REL606]
 gi|254792101|ref|YP_003076938.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           O157:H7 str. TW14359]
 gi|256020970|ref|ZP_05434835.1| pyruvate formate lyase-activating enzyme 1 [Shigella sp. D9]
 gi|256023397|ref|ZP_05437262.1| pyruvate formate lyase-activating enzyme 1 [Escherichia sp.
           4_1_40B]
 gi|260843152|ref|YP_003220930.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           O103:H2 str. 12009]
 gi|260854193|ref|YP_003228084.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           O26:H11 str. 11368]
 gi|260867074|ref|YP_003233476.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           O111:H- str. 11128]
 gi|261227405|ref|ZP_05941686.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261256172|ref|ZP_05948705.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291281903|ref|YP_003498721.1| Pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7
           str. CB9615]
 gi|293409279|ref|ZP_06652855.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B354]
 gi|297519591|ref|ZP_06937977.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli OP50]
 gi|306812645|ref|ZP_07446838.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli NC101]
 gi|307137531|ref|ZP_07496887.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli H736]
 gi|307311711|ref|ZP_07591351.1| pyruvate formate-lyase activating enzyme [Escherichia coli W]
 gi|309784023|ref|ZP_07678667.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae
           1617]
 gi|312969032|ref|ZP_07783239.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           2362-75]
 gi|312971030|ref|ZP_07785209.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           1827-70]
 gi|331656972|ref|ZP_08357934.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA206]
 gi|331662315|ref|ZP_08363238.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA143]
 gi|331667278|ref|ZP_08368143.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA271]
 gi|331682409|ref|ZP_08383028.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H299]
 gi|71159621|sp|P0A9N6|PFLA_ECO57 RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName:
           Full=Formate-C-acetyltransferase-activating enzyme 1;
           AltName: Full=PFL-activating enzyme 1
 gi|71159622|sp|P0A9N5|PFLA_ECOL6 RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName:
           Full=Formate-C-acetyltransferase-activating enzyme 1;
           AltName: Full=PFL-activating enzyme 1
 gi|71159623|sp|P0A9N4|PFLA_ECOLI RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName:
           Full=Formate-C-acetyltransferase-activating enzyme 1;
           AltName: Full=PFL-activating enzyme 1
 gi|71159624|sp|P0A9N7|PFLA_SHIFL RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName:
           Full=Formate-C-acetyltransferase-activating enzyme 1;
           AltName: Full=PFL-activating enzyme 1
 gi|12514065|gb|AAG55387.1|AE005279_7 pyruvate formate lyase activating enzyme 1 [Escherichia coli
           O157:H7 str. EDL933]
 gi|42371|emb|CAA30829.1| unnamed protein product [Escherichia coli K-12]
 gi|1787130|gb|AAC73988.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
           K-12 substr. MG1655]
 gi|4062478|dbj|BAA35637.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
           K12 substr. W3110]
 gi|13360444|dbj|BAB34408.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           O157:H7 str. Sakai]
 gi|30040683|gb|AAP16414.1| pyruvate formate lyase activating enzyme 1 [Shigella flexneri 2a
           str. 2457T]
 gi|56383317|gb|AAN42527.2| pyruvate formate lyase activating enzyme 1 [Shigella flexneri 2a
           str. 301]
 gi|73854935|gb|AAZ87642.1| pyruvate formate lyase activating enzyme 1 [Shigella sonnei Ss046]
 gi|81241726|gb|ABB62436.1| pyruvate formate lyase activating enzyme 1 [Shigella dysenteriae
           Sd197]
 gi|81246051|gb|ABB66759.1| pyruvate formate lyase activating enzyme 1 [Shigella boydii Sb227]
 gi|110342691|gb|ABG68928.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli 536]
 gi|110614458|gb|ABF03125.1| pyruvate formate lyase activating enzyme 1 [Shigella flexneri 5
           str. 8401]
 gi|157066104|gb|ABV05359.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli HS]
 gi|169755624|gb|ACA78323.1| pyruvate formate-lyase activating enzyme [Escherichia coli ATCC
           8739]
 gi|169888395|gb|ACB02102.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
           K-12 substr. DH10B]
 gi|187768338|gb|EDU32182.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4196]
 gi|188013962|gb|EDU52084.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4113]
 gi|188487364|gb|EDU62467.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 53638]
 gi|188998898|gb|EDU67884.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4076]
 gi|189355900|gb|EDU74319.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361165|gb|EDU79584.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4486]
 gi|189366831|gb|EDU85247.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372637|gb|EDU91053.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC869]
 gi|189376430|gb|EDU94846.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC508]
 gi|190907575|gb|EDV67170.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli F11]
 gi|192927673|gb|EDV82288.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E22]
 gi|192955922|gb|EDV86390.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           E110019]
 gi|194413590|gb|EDX29871.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B171]
 gi|194417387|gb|EDX33493.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae
           1012]
 gi|194422333|gb|EDX38333.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 101-1]
 gi|208725766|gb|EDZ75367.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4206]
 gi|208732018|gb|EDZ80706.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4045]
 gi|208737867|gb|EDZ85550.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4042]
 gi|209162241|gb|ACI39674.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4115]
 gi|209748614|gb|ACI72614.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli]
 gi|209748616|gb|ACI72615.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli]
 gi|209748618|gb|ACI72616.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli]
 gi|209911411|dbj|BAG76485.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli SE11]
 gi|215264099|emb|CAS08443.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217321082|gb|EEC29506.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. TW14588]
 gi|218351107|emb|CAU96811.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli 55989]
 gi|218355960|emb|CAQ88576.1| pyruvate formate lyase activating enzyme 1 [Escherichia fergusonii
           ATCC 35469]
 gi|218360256|emb|CAQ97806.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli IAI1]
 gi|218364576|emb|CAR02262.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli S88]
 gi|218370566|emb|CAR18373.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli IAI39]
 gi|218426306|emb|CAR07131.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli ED1a]
 gi|218431426|emb|CAR12304.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           UMN026]
 gi|222032633|emb|CAP75372.1| Pyruvate formate-lyase 1-activating enzyme [Escherichia coli LF82]
 gi|238863358|gb|ACR65356.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           BW2952]
 gi|242376717|emb|CAQ31430.1| pyruvate formate-lyase activating enzyme [Escherichia coli
           BL21(DE3)]
 gi|253325113|gb|ACT29715.1| pyruvate formate-lyase activating enzyme [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972917|gb|ACT38588.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli B str.
           REL606]
 gi|253977131|gb|ACT42801.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           BL21(DE3)]
 gi|254591501|gb|ACT70862.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           O157:H7 str. TW14359]
 gi|257752842|dbj|BAI24344.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           O26:H11 str. 11368]
 gi|257758299|dbj|BAI29796.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           O103:H2 str. 12009]
 gi|257763430|dbj|BAI34925.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           O111:H- str. 11128]
 gi|260449952|gb|ACX40374.1| pyruvate formate-lyase activating enzyme [Escherichia coli DH1]
 gi|281178033|dbj|BAI54363.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli SE15]
 gi|281600262|gb|ADA73246.1| Pyruvate formate lyase-activating enzyme 1 [Shigella flexneri
           2002017]
 gi|284920753|emb|CBG33816.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli 042]
 gi|290761776|gb|ADD55737.1| Pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7
           str. CB9615]
 gi|291469747|gb|EFF12231.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B354]
 gi|305853408|gb|EFM53847.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli NC101]
 gi|306908266|gb|EFN38765.1| pyruvate formate-lyase activating enzyme [Escherichia coli W]
 gi|307552741|gb|ADN45516.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli ABU
           83972]
 gi|307627671|gb|ADN71975.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli UM146]
 gi|308928166|gb|EFP73629.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae
           1617]
 gi|309701178|emb|CBJ00478.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli ETEC
           H10407]
 gi|310336791|gb|EFQ01958.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           1827-70]
 gi|312286434|gb|EFR14347.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           2362-75]
 gi|312945422|gb|ADR26249.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O83:H1
           str. NRG 857C]
 gi|313648452|gb|EFS12895.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri 2a
           str. 2457T]
 gi|315060187|gb|ADT74514.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli W]
 gi|315135550|dbj|BAJ42709.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli DH1]
 gi|315619096|gb|EFU99676.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 3431]
 gi|320173243|gb|EFW48452.1| Pyruvate formate-lyase activating enzyme [Shigella dysenteriae CDC
           74-1112]
 gi|320182031|gb|EFW56936.1| Pyruvate formate-lyase activating enzyme [Shigella boydii ATCC
           9905]
 gi|320184266|gb|EFW59079.1| Pyruvate formate-lyase activating enzyme [Shigella flexneri CDC
           796-83]
 gi|320192612|gb|EFW67253.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7
           str. EC1212]
 gi|320196604|gb|EFW71227.1| Pyruvate formate-lyase activating enzyme [Escherichia coli
           WV_060327]
 gi|320202298|gb|EFW76869.1| Pyruvate formate-lyase activating enzyme [Escherichia coli EC4100B]
 gi|320637770|gb|EFX07562.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           O157:H7 str. G5101]
 gi|320653668|gb|EFX21742.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320659813|gb|EFX27369.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320664282|gb|EFX31433.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323157211|gb|EFZ43334.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           EPECa14]
 gi|323159528|gb|EFZ45508.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           E128010]
 gi|323165367|gb|EFZ51154.1| pyruvate formate-lyase 1-activating enzyme [Shigella sonnei 53G]
 gi|323175475|gb|EFZ61070.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 1180]
 gi|323185392|gb|EFZ70756.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 1357]
 gi|323190722|gb|EFZ75991.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           RN587/1]
 gi|323379256|gb|ADX51524.1| pyruvate formate-lyase activating enzyme [Escherichia coli KO11]
 gi|323938008|gb|EGB34270.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E1520]
 gi|323942818|gb|EGB38983.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E482]
 gi|323947309|gb|EGB43317.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H120]
 gi|323953391|gb|EGB49257.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H252]
 gi|323958207|gb|EGB53916.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H263]
 gi|323962894|gb|EGB58468.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H489]
 gi|323967149|gb|EGB62573.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M863]
 gi|323973225|gb|EGB68417.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA007]
 gi|323976711|gb|EGB71799.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           TW10509]
 gi|325496842|gb|EGC94701.1| pyruvate formate lyase-activating enzyme 1 [Escherichia fergusonii
           ECD227]
 gi|326338203|gb|EGD62032.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7
           str. 1125]
 gi|326346180|gb|EGD69918.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7
           str. 1044]
 gi|327253691|gb|EGE65320.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           STEC_7v]
 gi|330910682|gb|EGH39192.1| pyruvate formate-lyase activating enzyme [Escherichia coli AA86]
 gi|331055220|gb|EGI27229.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA206]
 gi|331060737|gb|EGI32701.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA143]
 gi|331065634|gb|EGI37527.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA271]
 gi|331080040|gb|EGI51219.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H299]
 gi|332093544|gb|EGI98602.1| pyruvate formate-lyase 1-activating enzyme [Shigella boydii
           3594-74]
 gi|332095904|gb|EGJ00911.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae
           155-74]
          Length = 246

 Score = 41.2 bits (96), Expect = 0.096,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 72  GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 108


>gi|317047551|ref|YP_004115199.1| pyruvate formate-lyase activating enzyme [Pantoea sp. At-9b]
 gi|316949168|gb|ADU68643.1| pyruvate formate-lyase activating enzyme [Pantoea sp. At-9b]
          Length = 246

 Score = 41.2 bits (96), Expect = 0.097,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 54/171 (31%), Gaps = 35/171 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEDLMKDVLSYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKAGCDL 141
                +GGE +LQ +      +A    G    ++TNG        ID  + V+     DL
Sbjct: 72  GGVTASGGEAILQAEFVRDWFRACRAEGIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDL 131

Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC 192
           K            Q+ V   N+   DF R  LQ       ++ T   I Y 
Sbjct: 132 KQINDD-----IHQILVGVSNHRTMDFAR-YLQ-------KKGTRTWIRYV 169


>gi|15920303|ref|NP_375972.1| coenzyme PQQ synthesis protein [Sulfolobus tokodaii str. 7]
 gi|15621085|dbj|BAB65081.1| 377aa long hypothetical coenzyme PQQ synthesis protein [Sulfolobus
           tokodaii str. 7]
          Length = 377

 Score = 41.2 bits (96), Expect = 0.097,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 21/118 (17%)

Query: 12  TLQGE------GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           T++GE         +    VF R     + +     + + +C  C   ++          
Sbjct: 17  TIKGEYNPKNPSKFS---QVF-R----PVVTWNMTYKCNLKCLHC---YISASPQGDDGL 65

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
             D+  +L+++     E +    +++GGEPL++ D   + +  +KRG ++A+ TNGT+
Sbjct: 66  TKDEAINLVDQM---AEIKIPLLIMSGGEPLMRRDFFEIAKYASKRGLKLALSTNGTL 120


>gi|85716677|ref|ZP_01047646.1| Fe-S oxidoreductase [Nitrobacter sp. Nb-311A]
 gi|85696517|gb|EAQ34406.1| Fe-S oxidoreductase [Nitrobacter sp. Nb-311A]
          Length = 389

 Score = 41.2 bits (96), Expect = 0.097,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C                R    +  D  EE             + 
Sbjct: 38  CNLAC--------AGCG----KIDYPDAILNRRMTAQECWDAAEECG------APMVAIP 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+  ++  +++ L  R   +++ TN  +   + +D    SP     + + G +E
Sbjct: 80  GGEPLIHKEIGEIVRGLVARKKFVSLCTN-ALLLEKKLDLFEPSPYLFFSVHLDGLRE 136


>gi|113474120|ref|YP_720181.1| radical SAM family protein [Trichodesmium erythraeum IMS101]
 gi|110165168|gb|ABG49708.1| Radical SAM [Trichodesmium erythraeum IMS101]
          Length = 340

 Score = 41.2 bits (96), Expect = 0.097,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
                 + GGEPLL   +  +++ L  R   + + TNG +   + +D    SP     + 
Sbjct: 72  GAPVVSIPGGEPLLHPQISEIVKGLVDRKKFVYLCTNG-LLLKKNLDKFEPSPYLTFSVH 130

Query: 143 IKG 145
           + G
Sbjct: 131 LDG 133


>gi|332093278|gb|EGI98338.1| pyruvate formate-lyase 1-activating enzyme [Shigella boydii
           5216-82]
          Length = 246

 Score = 41.2 bits (96), Expect = 0.098,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 72  GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 108


>gi|323174998|gb|EFZ60613.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli LT-68]
          Length = 246

 Score = 41.2 bits (96), Expect = 0.098,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 72  GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 108


>gi|255099315|ref|ZP_05328292.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile QCD-63q42]
          Length = 316

 Score = 41.2 bits (96), Expect = 0.098,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           Y VD+L  +I+       +       +GGEPLLQ +    ++   ++     A+ET+
Sbjct: 117 YTVDELVQVIKRD-SNNWRSNGGVTFSGGEPLLQHEFLHEVLLKCHEVNVHTAIETS 172


>gi|52143300|ref|YP_083529.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus E33L]
 gi|51976769|gb|AAU18319.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus E33L]
          Length = 337

 Score = 41.2 bits (96), Expect = 0.098,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  F+  +         D++  L       G  + R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPDYAFLQEEC----LLTFDEIERLARLFISMGVNKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           GEPLL+ D+P LI  L K  G + I + TNG
Sbjct: 75  GEPLLRKDLPKLIARLAKLEGLKDIGLTTNG 105


>gi|329937240|ref|ZP_08286839.1| Transcriptional regulator [Streptomyces griseoaurantiacus M045]
 gi|329303521|gb|EGG47407.1| Transcriptional regulator [Streptomyces griseoaurantiacus M045]
          Length = 373

 Score = 41.2 bits (96), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 14/104 (13%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
             CNL                DT +             D+LA  I E       E    V
Sbjct: 6   QQCNLACDHCYVYELR-----DTSWRSKPRVLSEE-TADRLAVRIAEHARRHGLESVRIV 59

Query: 90  LTGGEPLL-------QVDVPLIQALNK-RGFEIAVETNGTIEPP 125
           L GGEPLL        +   + + L      +I +++NGT+  P
Sbjct: 60  LHGGEPLLAGRSRMEHLLSAVTEELRGIAECDITLQSNGTLLNP 103


>gi|213619168|ref|ZP_03372994.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 151

 Score = 41.2 bits (96), Expect = 0.099,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 46  FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEDLMKEVVTYRHFMNASG 90

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 91  GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 127


>gi|194292465|ref|YP_002008372.1| molybdenum cofactor biosynthesis protein a [Cupriavidus taiwanensis
           LMG 19424]
 gi|193226369|emb|CAQ72318.1| MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A [Cupriavidus taiwanensis
           LMG 19424]
          Length = 358

 Score = 41.2 bits (96), Expect = 0.099,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 22/97 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           D+ + +C +C        D  F+    T   R + D+L  ++      G ++ R   LTG
Sbjct: 36  DQCNFRCTYCMPKSRFGRDYPFL----TPAQRLSDDELLRIVRAFVGLGVEKVR---LTG 88

Query: 93  GEPLLQVDVP-LIQALNK----RGFEIAV--ETNGTI 122
           GEPLL+  +  L++ +       G  +AV   TNG++
Sbjct: 89  GEPLLRKGIETLVERIAAMRTREGKPVAVAMTTNGSL 125


>gi|228945768|ref|ZP_04108115.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228813989|gb|EEM60263.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 333

 Score = 41.2 bits (96), Expect = 0.099,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  F+  +         D++  L       G  + R   LTG
Sbjct: 18  DRCNFRCTYCMPAEVFGPDYAFLQEEC----LLTFDEIERLARLFISMGVNKIR---LTG 70

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           GEPLL+ D+P LI  L K  G + I + TNG
Sbjct: 71  GEPLLRKDLPKLIARLAKLEGLKDIGLTTNG 101


>gi|118477567|ref|YP_894718.1| GTP cyclohydrolase subunit MoaA [Bacillus thuringiensis str. Al
           Hakam]
 gi|225864114|ref|YP_002749492.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           03BB102]
 gi|118416792|gb|ABK85211.1| GTP cyclohydrolase subunit MoaA [Bacillus thuringiensis str. Al
           Hakam]
 gi|225790320|gb|ACO30537.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           03BB102]
          Length = 337

 Score = 41.2 bits (96), Expect = 0.099,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  F+  +         D++  L       G  + R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPDYAFLQEEC----LLTFDEIERLARLFISMGVNKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           GEPLL+ D+P LI  L K  G + I + TNG
Sbjct: 75  GEPLLRKDLPKLIARLAKLEGLKDIGLTTNG 105


>gi|49481735|ref|YP_036288.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|301053674|ref|YP_003791885.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis CI]
 gi|49333291|gb|AAT63937.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|300375843|gb|ADK04747.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus biovar
           anthracis str. CI]
          Length = 337

 Score = 41.2 bits (96), Expect = 0.099,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  F+  +         D++  L       G  + R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPDYAFLQEEC----LLTFDEIERLARLFISMGVNKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           GEPLL+ D+P LI  L K  G + I + TNG
Sbjct: 75  GEPLLRKDLPKLIARLAKLEGLKDIGLTTNG 105


>gi|295107081|emb|CBL04624.1| GTP cyclohydrolase subunit MoaA [Gordonibacter pamelaeae 7-10-1-b]
          Length = 333

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C     G+Q       ++ ++ ++ +   +      R   LTGGEPL+++ 
Sbjct: 18  DRCNFRCIYC-MPEDGVQSLAHE--DILRIEEIEQAVRVAAGMGIRSIRLTGGEPLVRLG 74

Query: 101 -VPLIQAL-NKRGFE-IAVETNGTIEPPQGID 129
            V L++A+ +  G E +++ TNG + P    D
Sbjct: 75  VVDLVRAIAHTPGIENVSMTTNGVLLPKMADD 106


>gi|295096474|emb|CBK85564.1| glycyl-radical enzyme activating protein family [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 299

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 50  CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQAL 107
           C T  + + G +     V+++   +       ++ G    L+GGEP +   +   L +A 
Sbjct: 92  CPTQALTVCGEEKQ---VEEIMATVLRDKPFYDRSGGGITLSGGEPFMNPALAHALFKAS 148

Query: 108 NKRGFEIAVET 118
           +++G   AVET
Sbjct: 149 HEQGIHTAVET 159


>gi|292669981|ref|ZP_06603407.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Selenomonas noxia ATCC 43541]
 gi|292648393|gb|EFF66365.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Selenomonas noxia ATCC 43541]
          Length = 175

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 30/105 (28%)

Query: 15  GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLA 71
           GEG    R+ VF    GC             +C  C   DT     Q   GGR     + 
Sbjct: 24  GEGI---RLTVF--TQGCP-----------RRCPGCHNPDT-----QPLVGGRMT--TVG 60

Query: 72  DLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
           ++I E        G    L+GGEP LQ    +PL +A ++RG ++
Sbjct: 61  EIIAELDANPLLTG--LTLSGGEPFLQPAALLPLARAAHERGLDV 103


>gi|292491535|ref|YP_003526974.1| molybdenum cofactor biosynthesis protein A [Nitrosococcus
           halophilus Nc4]
 gi|291580130|gb|ADE14587.1| molybdenum cofactor biosynthesis protein A [Nitrosococcus
           halophilus Nc4]
          Length = 335

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 29/145 (20%)

Query: 41  DRLSAQCRFCDTDFVGIQGT----KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
           DR + +C +C    +  +      +      ++++ L+      G ++ R   LTGGEPL
Sbjct: 20  DRCNFRCPYCMPKEIYGRKWAFLPRNELLTFEEISRLVRIFVTLGVEKVR---LTGGEPL 76

Query: 97  L-QVDVPLIQALNKRGFEIAVE--------TNGTIEPP-------QGIDWICVSPKAGCD 140
           L Q    L++ L       ++E        TNG++           G+  + VS  +  +
Sbjct: 77  LRQDLEQLVRMLA------SIEALQDLTLTTNGSLLASRAERLKEAGLKRVTVSLDSLDE 130

Query: 141 LKIKGGQELKLVFPQVNVSPENYIG 165
                  ++K    QV    E    
Sbjct: 131 TTFMAMNDVKFPLAQVLEGIEAATK 155


>gi|238753495|ref|ZP_04614858.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia ruckeri ATCC
           29473]
 gi|238708448|gb|EEQ00803.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia ruckeri ATCC
           29473]
          Length = 215

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 54/163 (33%), Gaps = 31/163 (19%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101
           +C +C   DT         G    V++L              G     +GGE +LQ +  
Sbjct: 2   RCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFMNASGGGVTASGGEAILQAEFV 57

Query: 102 -PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155
               +A +K G    ++TNG +        + +D          DL +   +++     Q
Sbjct: 58  RDWFRACHKEGIHTCLDTNGFVRRYDPVIDELLD--------ETDLVMLDLKQMDDAIHQ 109

Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
             V   N+   +F R+          + N    I Y    P W
Sbjct: 110 NLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV-PGW 143


>gi|289810854|ref|ZP_06541483.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 123

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 15  FQGC-----------LMRCLYCHNRDT----WDTHGGKEITVEDLMKEVVTYRHFMNASG 59

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 60  GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 96


>gi|134046071|ref|YP_001097557.1| molybdenum cofactor biosynthesis protein A [Methanococcus
           maripaludis C5]
 gi|189028687|sp|A4FYQ8|MOAA_METM5 RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|132663696|gb|ABO35342.1| GTP cyclohydrolase subunit MoaA [Methanococcus maripaludis C5]
          Length = 298

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 28/119 (23%)

Query: 28  RFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           R S    CNL           +C +C     G     G   + D++  +++      E  
Sbjct: 13  RLSITPKCNL-----------KCFYC--HKEGRNEEHGKLMSADEIGKIVKSSL---EFG 56

Query: 85  GRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNGTI-------EPPQGIDWICVS 134
            R   ++GGEPLL+ D+P +I+ +     + I++ TNG +           G+D + VS
Sbjct: 57  VRKIKISGGEPLLRTDLPEIIENIKDEQIKDISLTTNGILLEKYAQKLKDAGLDRVNVS 115


>gi|90960988|ref|YP_534906.1| Fe-S oxidoreductase component of heme biosynthesis [Pelobacter
           carbinolicus DSM 2380]
 gi|90823171|gb|ABE01087.1| Fe-S oxidoreductase, putative component of heme biosynthesis
           [Pelobacter carbinolicus DSM 2380]
          Length = 366

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR C +D     G+ G       + D+               VL+
Sbjct: 23  CNLQC--------IHCR-CSSDADAPDGSFGTEEAFRLIDDI-------CTVSKPVLVLS 66

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D+  +      +G  + + TNGT+
Sbjct: 67  GGEPLLRDDIFDIAAYGTDQGLRMCMATNGTL 98


>gi|319787616|ref|YP_004147091.1| molybdenum cofactor biosynthesis protein A [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317466128|gb|ADV27860.1| molybdenum cofactor biosynthesis protein A [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 339

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           D  + +C +C   D        +   R + DQ+  L+      G ++ R   LTGGEPLL
Sbjct: 28  DACNFRCGYCMPADRVPDDHGTSAASRMSFDQIETLVRGFVQVGVRKLR---LTGGEPLL 84

Query: 98  QVDVP-LIQALNK-RGFE-IAVETNG 120
           + ++P LI  L +  G E +A+ TNG
Sbjct: 85  RRNLPELIARLARIPGIEDLALTTNG 110


>gi|298241808|ref|ZP_06965615.1| hypothetical protein Krac_10219 [Ktedonobacter racemifer DSM 44963]
 gi|297554862|gb|EFH88726.1| hypothetical protein Krac_10219 [Ktedonobacter racemifer DSM 44963]
          Length = 515

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 57/189 (30%), Gaps = 21/189 (11%)

Query: 31  GCNLWSGREQDRLSAQCRF-------C--DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           GC    G   D     C         C  D          G    ++++  +++   +  
Sbjct: 86  GCPYDCGLCPDHQQHACLGIIEVNSACNMDCPLCFADAGAGFNLTLEEVEGILD-HLVET 144

Query: 82  EKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNGTIEPPQGIDWICVS---PK 136
           E        +GGEP +    + ++ A  KR    + + TNG            +S   P 
Sbjct: 145 EGNPEVVQFSGGEPSIHPQIIEMMWAAKKRNIRHVMLNTNGKRIADDDAFLQQLSELHPS 204

Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENYIGFDF-----ERFSLQP-MDGPFLEENTNLAIS 190
                     +  +++  + ++ P+     D          L P +D           + 
Sbjct: 205 VYFQFDGFEAETYRIIRGEPDILPQKLRALDRLAEIGANVVLVPAIDRYVNLHEVGAIVE 264

Query: 191 YCFQNPKWR 199
           +  ++P  R
Sbjct: 265 FGMKHPAVR 273


>gi|229184372|ref|ZP_04311579.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BGSC
           6E1]
 gi|228599168|gb|EEK56781.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BGSC
           6E1]
          Length = 333

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  F+  +         D++  L       G  + R   LTG
Sbjct: 18  DRCNFRCTYCMPAEVFGPDYAFLQEEC----LLTFDEIERLARLFISMGVNKIR---LTG 70

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           GEPLL+ D+P LI  L K  G + I + TNG
Sbjct: 71  GEPLLRKDLPKLIARLAKLEGLKDIGLTTNG 101


>gi|95928898|ref|ZP_01311644.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
 gi|95135243|gb|EAT16896.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
          Length = 441

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 20/99 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              CNL           +C  C   F+     +        LAD+ ++     ++ G   
Sbjct: 112 TQRCNL-----------RCPVC---FMAADDNQTHVETDLSLADIKKQLVKIMDQCGPQT 157

Query: 89  VL--TGGEPLLQVDVPLIQALNKR-GFEIAVE--TNGTI 122
            +  TGGEP ++ D+P I AL +  GF  A+E  TNG +
Sbjct: 158 SIQLTGGEPTVRKDLPDIIALCREIGFS-AIEVNTNGVV 195


>gi|220933522|ref|YP_002512421.1| GTP cyclohydrolase subunit MoaA [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994832|gb|ACL71434.1| GTP cyclohydrolase subunit MoaA [Thioalkalivibrio sp. HL-EbGR7]
          Length = 327

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 16/99 (16%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEG 85
            R S          D+   +C +C          +   + + D++A ++      G +  
Sbjct: 15  VRLS--------VTDQCDLRCFYC-MPKGFKDFEEPEHWLSFDEIARVMGAFGQLGVQRV 65

Query: 86  RYCVLTGGEPLLQVDVP-LIQALNKR-GF-EIAVETNGT 121
           R   +TGGEPL++ D+P L+  L    G  +I++ TN T
Sbjct: 66  R---ITGGEPLVRKDIPDLVSRLAALPGINDISLSTNAT 101


>gi|169832127|ref|YP_001718109.1| radical SAM domain-containing protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638971|gb|ACA60477.1| Radical SAM domain protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 453

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 15/108 (13%)

Query: 28  RFS-----GCNLWSGREQDRLSAQC-------RFCDTD-FVGIQGTKGGRYNVDQLADLI 74
           RFS     GC    G   D     C       + CD      +    G  +   +    +
Sbjct: 76  RFSTRVERGCPHDCGLCPDHQQHTCLAIIDVTQACDLKCPACLADAGGSGFLAPEQVARL 135

Query: 75  EEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFE-IAVETNG 120
            + +   E        +GGEP L  ++  L+     +G   + + TNG
Sbjct: 136 LDVYRECEGNPDVLQFSGGEPTLHPELFELLALARAKGIRLVQLNTNG 183


>gi|260913766|ref|ZP_05920242.1| pyruvate formate-lyase 1-activating enzyme [Pasteurella dagmatis
           ATCC 43325]
 gi|260632305|gb|EEX50480.1| pyruvate formate-lyase 1-activating enzyme [Pasteurella dagmatis
           ATCC 43325]
          Length = 246

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G    V++L   +     
Sbjct: 21  IRFILFMQGC-----------LMRCKYCHNRDT----WDLHGGREITVEELMKEVVTYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                G     +GGE +LQ +      +A    G    ++TNG
Sbjct: 66  FMNASGGGVTASGGEAVLQAEFVRDWFKACKDVGIHTCLDTNG 108


>gi|225025860|ref|ZP_03715052.1| hypothetical protein EUBHAL_00088 [Eubacterium hallii DSM 3353]
 gi|224956811|gb|EEG38020.1| hypothetical protein EUBHAL_00088 [Eubacterium hallii DSM 3353]
          Length = 307

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 33  NLWSGREQDRLS-AQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           NL    + D      C  C D  +       G    V++L   + +  +   K G    +
Sbjct: 78  NLNVPGKIDHTKCIACGKCIDVCYHRALEMSGKWMTVEELMGELYKDRVIYRKSGGGITV 137

Query: 91  TGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
           +GGE ++Q    + L++A    G+  A+ET G
Sbjct: 138 SGGEAMVQHEFLLELLKACKSFGWTTAIETTG 169


>gi|254168706|ref|ZP_04875548.1| probable molybdenum cofactor biosynthesis protein A
           [Aciduliprofundum boonei T469]
 gi|197622332|gb|EDY34905.1| probable molybdenum cofactor biosynthesis protein A
           [Aciduliprofundum boonei T469]
          Length = 300

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 37/118 (31%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C     G           D++  +++   I  E + R    T
Sbjct: 12  CNL-----------NCFYC--HREGEWHRHHSEMTPDEIERILK---IARELDIRKVKFT 55

Query: 92  GGEPLLQVDV--------PLIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134
           GGEPL + D+        PL+        ++++ TNGT+           G+D + VS
Sbjct: 56  GGEPLCRNDIVEIVLKSAPLMDR------DVSLTTNGTLLSKYAYELKEVGLDRVNVS 107


>gi|52220917|ref|YP_086786.1| heme d1 biosynthesis protein-like protein [Agrobacterium
           tumefaciens]
 gi|222112734|ref|YP_002559287.1| heme d1 biosynthesis protein-like protein [Agrobacterium
           radiobacter K84]
 gi|41393799|gb|AAS02147.1| heme d1 biosynthesis protein-like protein [Agrobacterium
           tumefaciens]
 gi|221728511|gb|ACM31483.1| heme d1 biosynthesis protein-like protein [Agrobacterium
           radiobacter K84]
          Length = 344

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 13/94 (13%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
           C  CD      + T      V+     ++       K      +TGGEPLL      I A
Sbjct: 32  CVMCD----YWRLTAPNSMTVESAKAFLDLFPGDTLKSAL---ITGGEPLLNRHWREIAA 84

Query: 107 LNKRGFEIAVETNGT------IEPPQGIDWICVS 134
           L   G   ++ TNG+       +  +  D + VS
Sbjct: 85  LLPPGARKSICTNGSPILVKNRDIGEYFDRVTVS 118


>gi|81428584|ref|YP_395584.1| formate C-acetyltransferase activating enzyme (pyruvate
           formate-lyase activating enzyme) [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610226|emb|CAI55275.1| Formate C-acetyltransferase activating enzyme (Pyruvate
           formate-lyase activating enzyme) [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 269

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 44/122 (36%), Gaps = 34/122 (27%)

Query: 8   EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           E F ++ G G          RF     GC             +C FC   DT  +G    
Sbjct: 33  ESFGSVDGPG---------IRFVAFLQGC-----------RMRCEFCHNPDTWNIG---- 68

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
            G  Y  D+L            KEG     +GGE L+Q+D  + L +    +G    ++T
Sbjct: 69  SGEPYTADELIAKALPYKAFWGKEGG-ITCSGGESLIQIDFLIDLFKKCKAQGINTCLDT 127

Query: 119 NG 120
            G
Sbjct: 128 CG 129


>gi|116748310|ref|YP_844997.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116697374|gb|ABK16562.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 331

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 19/89 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL                DT              +D+    ++E             +T
Sbjct: 38  CNLTCSGCGRIREYH----DTLH--------QEMTLDECLRSVDE------SPSPVVTIT 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETN 119
           GGEPLL   +  L+ ++  R   I   TN
Sbjct: 80  GGEPLLYSRIQALVDSVLARKKHIYFCTN 108


>gi|298372109|ref|ZP_06982099.1| coenzyme PQQ synthesis protein E [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298275013|gb|EFI16564.1| coenzyme PQQ synthesis protein E [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 374

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 14/90 (15%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL               CD       G       +D + D++E             VLT
Sbjct: 41  CNLSCLHCGSDCKKDSSVCDMPAKDFFG------ALDSITDILE-------PNNTMIVLT 87

Query: 92  GGEPLLQVDVPLI-QALNKRGFEIAVETNG 120
           GGE LL+ D+  I + L  RGF   + TNG
Sbjct: 88  GGEALLRKDIEQIGRQLYIRGFPWGIVTNG 117


>gi|305679890|ref|ZP_07402700.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Corynebacterium matruchotii ATCC 14266]
 gi|305660510|gb|EFM50007.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Corynebacterium matruchotii ATCC 14266]
          Length = 225

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 30/125 (24%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F    GC L           +C +C      +Q    G ++  +   L  ++    + 
Sbjct: 41  TIF--TQGCPL-----------RCVYC--HNPSLQAFGAGSHDFAEALALAVDRRSLIDG 85

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNK-RGFEIAVETNGTIE---------PPQGIDWIC 132
                V++GGEP     +   I A+++  G  + + T G            P    DW+ 
Sbjct: 86  ----VVISGGEPTAVPGLADAIAAVHETAGLPVGLHTCGYSPARIGRLLERPESTPDWVG 141

Query: 133 VSPKA 137
           +  KA
Sbjct: 142 LDIKA 146


>gi|256827640|ref|YP_003151599.1| putative Fe-S oxidoreductase [Cryptobacterium curtum DSM 15641]
 gi|256583783|gb|ACU94917.1| predicted Fe-S oxidoreductase [Cryptobacterium curtum DSM 15641]
          Length = 561

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A CR          G+  G  +++Q   +I++            ++T
Sbjct: 151 CNLSC--------AHCR-----AAAEFGSYAGELSLEQCKAVIDD---IATITNPILIIT 194

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEP ++ D+  +I    +RG    V TNGTI
Sbjct: 195 GGEPFMRPDIWDIIDYARERGCMPVVGTNGTI 226


>gi|20094425|ref|NP_614272.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
 gi|19887509|gb|AAM02202.1| Predicted Fe-S oxidoreductase [Methanopyrus kandleri AV19]
          Length = 419

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 43/165 (26%)

Query: 27  CR-FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD-----QLADLIEEQWIT 80
            R  SGCNL            C +C  D   I  T+   + VD     +  D + E    
Sbjct: 115 VRPLSGCNLC-----------CIYCSVDEGPISRTRSRDFMVDPDYLMEWFDRVAEFKGQ 163

Query: 81  GEKEGRYCVLTG-GEPLLQVDVP-LIQALNKRGF--EIAVETNGTIEPPQ---------G 127
           G +        G GEP L   +P ++QAL +      ++++TN  +   +         G
Sbjct: 164 GLEAHLD----GQGEPTLYPFLPDVVQALKEHPHVDIVSIQTN-AVPLSEDLVDELVEAG 218

Query: 128 IDWICVS-----PKAGCDLKIKGGQE---LKLVFPQVNVSPENYI 164
           ID   VS     PK    +  +   +   +K V   +    E  +
Sbjct: 219 IDRFNVSVNSLDPKKARAMAGRKDYDVEHVKRVVEYIAQETEADV 263


>gi|325267891|ref|ZP_08134541.1| molybdenum cofactor biosynthesis protein A [Kingella denitrificans
           ATCC 33394]
 gi|324980772|gb|EGC16434.1| molybdenum cofactor biosynthesis protein A [Kingella denitrificans
           ATCC 33394]
          Length = 324

 Score = 41.2 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 63/170 (37%), Gaps = 22/170 (12%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D  + +C +C    +        + +   L ++     +  +   R   +TGGEP L+ D
Sbjct: 20  DLCNYRCNYC----LPNGYQGKAKPDELTLPEIETLAAVFAQNGTRKIRITGGEPTLRRD 75

Query: 101 VP-LIQALNKRG--FEIAVETN----GTIEP---PQGIDWICV---SPKAGCDLKIKGGQ 147
           +P +I A   +     IA+ TN    G + P     G+D + V   S       KI G Q
Sbjct: 76  LPDIIAACRAQPEIQHIALTTNAFKLGKLFPQYRAAGLDKLNVSIDSFNPETFFKITGKQ 135

Query: 148 ELKLVFPQV-NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196
           E + +   + N+  E +         L       + E    AI +    P
Sbjct: 136 ECRHILNDLENILAEGFNNVKINTLLL----REHIAETLPDAIRFVKTRP 181


>gi|322833298|ref|YP_004213325.1| glycyl-radical enzyme activating protein family [Rahnella sp.
           Y9602]
 gi|321168499|gb|ADW74198.1| glycyl-radical enzyme activating protein family [Rahnella sp.
           Y9602]
          Length = 299

 Score = 41.2 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118
           G   ++D L   I        + G    L+GGEP LQ  +   L+Q     G   AVE+
Sbjct: 101 GNDADIDALMQQILRDKPFYTRTGGGVTLSGGEPFLQPQIALTLLQRCRHEGLHTAVES 159


>gi|254168775|ref|ZP_04875616.1| probable molybdenum cofactor biosynthesis protein A
           [Aciduliprofundum boonei T469]
 gi|197622212|gb|EDY34786.1| probable molybdenum cofactor biosynthesis protein A
           [Aciduliprofundum boonei T469]
          Length = 300

 Score = 41.2 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 37/118 (31%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C     G           D++  +++   I  E + R    T
Sbjct: 12  CNL-----------NCFYC--HREGEWHRHHSEMTPDEIERILK---IARELDIRKVKFT 55

Query: 92  GGEPLLQVDV--------PLIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134
           GGEPL + D+        PL+        ++++ TNGT+           G+D + VS
Sbjct: 56  GGEPLCRNDIVEIVLKSAPLMDR------DVSLTTNGTLLSKYAYELKEVGLDRVNVS 107


>gi|146283824|ref|YP_001173977.1| radical-activating enzyme [Pseudomonas stutzeri A1501]
 gi|145572029|gb|ABP81135.1| probable radical-activating enzyme [Pseudomonas stutzeri A1501]
          Length = 207

 Score = 41.2 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 24/118 (20%)

Query: 26  FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           FC   GC             +CR+C    + I           ++   +E++    E   
Sbjct: 3   FC--QGC-----------GWRCRYCHNPQL-IPACGNEEKPWSEILAFLEQRVGLLEA-- 46

Query: 86  RYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKA 137
              V +GGEP LQ  +P  I  +   G+++ + + G            +DW+    KA
Sbjct: 47  --VVFSGGEPTLQTALPEAIAQVRALGYKVGLHSAGIKPKLFAGILPLVDWVGFDVKA 102


>gi|289674682|ref|ZP_06495572.1| radical SAM family protein [Pseudomonas syringae pv. syringae FF5]
          Length = 34

 Score = 41.2 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 17/26 (65%)

Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQ 126
           + L++ L   G+E+++ET+G ++   
Sbjct: 4   IALLKRLCDAGYEVSLETSGALDISA 29


>gi|229816492|ref|ZP_04446791.1| hypothetical protein COLINT_03544 [Collinsella intestinalis DSM
           13280]
 gi|229807827|gb|EEP43630.1| hypothetical protein COLINT_03544 [Collinsella intestinalis DSM
           13280]
          Length = 272

 Score = 41.2 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 18/80 (22%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITG 81
            RF     GC +           +C +C        G   G   +V++L    E      
Sbjct: 35  VRFVVFTQGCPM-----------RCAYCHNPDTWTTGEGAGTCVSVERLLGEYESNRP-- 81

Query: 82  EKEGRYCVLTGGEPLLQVDV 101
                   +TGGEPLLQ + 
Sbjct: 82  FYRTGGLTVTGGEPLLQPEF 101


>gi|206900307|ref|YP_002251638.1| antilisterial bacteriocin subtilosin biosynthesis protein AlbA,
           putative [Dictyoglomus thermophilum H-6-12]
 gi|206739410|gb|ACI18468.1| antilisterial bacteriocin subtilosin biosynthesis protein AlbA,
           putative [Dictyoglomus thermophilum H-6-12]
          Length = 464

 Score = 41.2 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C  C          +G     D+L  ++E   +  +K  R   LTGGEP L  +
Sbjct: 131 DRCNLRCLHC----YRSSTCEGIFIEKDKLFKIVE---VLTKKGLRMVELTGGEPTLHPN 183

Query: 101 -VPLIQALNKRGFEIAVETNGT 121
            + ++  L  +   +A+ TNGT
Sbjct: 184 FIEILSYLLSKLELVAILTNGT 205


>gi|194016213|ref|ZP_03054827.1| molybdenum cofactor biosynthesis protein A [Bacillus pumilus ATCC
           7061]
 gi|194011686|gb|EDW21254.1| molybdenum cofactor biosynthesis protein A [Bacillus pumilus ATCC
           7061]
          Length = 305

 Score = 41.2 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 17/105 (16%)

Query: 90  LTGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
           +TGGEPL++ D+P LI+ L+K  G E IA+ TNGT+ P                 K+K  
Sbjct: 42  ITGGEPLMRKDLPILIEKLSKIPGIEDIAMTTNGTLLPV-------------YAEKLKKA 88

Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPM-DGPFLEENTNLAIS 190
              ++     +++P+ +   +    S+Q + DG    +   LAI 
Sbjct: 89  GLQRVTISLDSLNPDRFKQMNGRNISIQKVFDGIEAAKKAGLAIK 133


>gi|86749192|ref|YP_485688.1| radical SAM family protein [Rhodopseudomonas palustris HaA2]
 gi|86572220|gb|ABD06777.1| Radical SAM [Rhodopseudomonas palustris HaA2]
          Length = 394

 Score = 41.2 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 19/98 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDT-----DF-VGIQGTKGGRYNVDQLADLIE-EQWITGEKE 84
           CNL           +C +C +     D+      ++ GR     +A+++        + +
Sbjct: 16  CNL-----------KCSYCTSVADADDYGAVTSASRRGRGATIAIAEVLAMLDGFAAQVD 64

Query: 85  GRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGT 121
                L+GGE  LL     LI  L +R   + V TNGT
Sbjct: 65  APLIKLSGGELFLLANAAELIAELAQRYAHVQVLTNGT 102


>gi|30262154|ref|NP_844531.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           Ames]
 gi|47778008|ref|YP_018776.2| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49184996|ref|YP_028248.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           Sterne]
 gi|167633002|ref|ZP_02391328.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0442]
 gi|167638349|ref|ZP_02396626.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0193]
 gi|170686396|ref|ZP_02877617.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0465]
 gi|170706016|ref|ZP_02896478.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0389]
 gi|177650979|ref|ZP_02933876.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0174]
 gi|229602502|ref|YP_002866510.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0248]
 gi|254684722|ref|ZP_05148582.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           CNEVA-9066]
 gi|254720932|ref|ZP_05182723.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A1055]
 gi|254737167|ref|ZP_05194871.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           Western North America USA6153]
 gi|254743647|ref|ZP_05201332.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           Kruger B]
 gi|254751482|ref|ZP_05203519.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           Vollum]
 gi|254758355|ref|ZP_05210382.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           Australia 94]
 gi|30256780|gb|AAP26017.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           Ames]
 gi|47551713|gb|AAT31251.2| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49178923|gb|AAT54299.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           Sterne]
 gi|167513650|gb|EDR89019.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0193]
 gi|167531814|gb|EDR94479.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0442]
 gi|170129018|gb|EDS97883.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0389]
 gi|170669472|gb|EDT20214.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0465]
 gi|172083440|gb|EDT68501.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0174]
 gi|229266910|gb|ACQ48547.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0248]
          Length = 337

 Score = 41.2 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  F+  +         D++  L       G  + R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPDYAFLQEEC----LLTFDEIERLARLFISMGVNKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           GEPLL+ D+P LI  L K  G + I + TNG
Sbjct: 75  GEPLLRKDLPKLIARLAKLEGLKDIGLTTNG 105


>gi|309791205|ref|ZP_07685737.1| elongator protein 3/MiaB/NifB, putative [Oscillochloris trichoides
           DG6]
 gi|308226767|gb|EFO80463.1| elongator protein 3/MiaB/NifB, putative [Oscillochloris trichoides
           DG6]
          Length = 351

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 19/92 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C       +  +     +     LI++    G ++  +   +
Sbjct: 37  CNL-----------RCAMC----RHWREERPPPLPLTHWQHLIDDLAALGCRKLHF---S 78

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           GGEPLL   +P L+    + G  + + TNGT+
Sbjct: 79  GGEPLLAPYLPDLVAQATRLGIRVTLTTNGTL 110


>gi|224826976|ref|ZP_03700074.1| Radical SAM domain protein [Lutiella nitroferrum 2002]
 gi|224600809|gb|EEG06994.1| Radical SAM domain protein [Lutiella nitroferrum 2002]
          Length = 370

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 24/116 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C    +       G  + ++L  L EE   +G +     ++ 
Sbjct: 46  CNL-----------ACHDC----ISANLLNQGGIDNERLLRLAEEFAESGVRA--VVLIG 88

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI---EPPQGID---WICVSPKAGCD 140
           GGEP+       L+ +L + G ++ V TNGT+      + I    W+ VS  AG +
Sbjct: 89  GGEPMAHPKFGALVSSLYQSGIKVGVTTNGTLMHRYMDECITMTSWLRVSVDAGSE 144


>gi|293400932|ref|ZP_06645077.1| hypothetical protein
 gi|291305958|gb|EFE47202.1| [formate-C-acetyltransferase]-activating enzyme
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 272

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 88  CVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119
              +GGEPLLQ DV   ++QAL K    I VET+
Sbjct: 103 VTFSGGEPLLQADVLVGVMQALKKEQITICVETS 136


>gi|229091138|ref|ZP_04222361.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock3-42]
 gi|228692269|gb|EEL46005.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock3-42]
          Length = 333

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  F+  +         D++  L       G  + R   LTG
Sbjct: 18  DRCNFRCTYCMPAEVFGPDYAFLQEEC----LLTFDEIERLARLFISMGVNKIR---LTG 70

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           GEPLL+ D+P LI  L K  G + I + TNG
Sbjct: 71  GEPLLRKDLPKLIARLAKLEGLKDIGLTTNG 101


>gi|170754784|ref|YP_001782823.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum B1 str. Okra]
 gi|169119996|gb|ACA43832.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum B1 str. Okra]
          Length = 300

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 43  LSAQCRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
              +C FC   T+F      +  G      ++   I +  +  E+ G     +GGEP+L 
Sbjct: 80  DEGKCNFCGKCTNFCPNNAREYVGKDLTSQEIIKEIIKDEVFYEQSGGGVTFSGGEPMLH 139

Query: 99  VDVP--LIQALNKRGFEIAVETNG 120
            D    +++    RG    ++T+G
Sbjct: 140 ADFINGILEECKTRGIHTTIDTSG 163


>gi|154687786|ref|YP_001422947.1| molybdenum cofactor biosynthesis protein A [Bacillus
           amyloliquefaciens FZB42]
 gi|166217238|sp|A7Z9P0|MOAA_BACA2 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|154353637|gb|ABS75716.1| MoaA [Bacillus amyloliquefaciens FZB42]
          Length = 341

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 24/112 (21%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  F+     K    + ++L  L +     G        LTG
Sbjct: 25  DRCNFRCTYCMPAELFGPDYPFLQ----KTELLSFEELERLAK--LFVGRFGVEKIRLTG 78

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPP-------QGIDWICVS 134
           GEPL++ D+P LI+ L +  G + IA+ TNG++ P         G+  + VS
Sbjct: 79  GEPLMRKDMPELIKKLARIPGLKDIAMTTNGSLLPVYAEKLKQAGLHRVTVS 130


>gi|153931596|ref|YP_001385507.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|153934810|ref|YP_001388913.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum A str. Hall]
 gi|152927640|gb|ABS33140.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|152930724|gb|ABS36223.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum A str. Hall]
          Length = 300

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 43  LSAQCRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
              +C FC   T+F      +  G      ++   I +  +  E+       +GGEP+L 
Sbjct: 80  DEGKCNFCGKCTNFCPNNAREYVGKDLTPQEIIKEIIKDEVFYEQSSGGVTFSGGEPMLH 139

Query: 99  VDVP--LIQALNKRGFEIAVETNG 120
            D    +++    RG    ++T+G
Sbjct: 140 ADFINGILEECKVRGIHTTIDTSG 163


>gi|126178953|ref|YP_001046918.1| radical SAM domain-containing protein [Methanoculleus marisnigri
           JR1]
 gi|125861747|gb|ABN56936.1| Radical SAM domain protein [Methanoculleus marisnigri JR1]
          Length = 489

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 21/118 (17%)

Query: 30  SGCN--------------LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLI 74
           +GC               L +    +R +  C FC   F   +          DQ+  ++
Sbjct: 74  AGCPNDCGACENHRSTTLLANIDLTNRCNLNCDFC---FANARACGYVYEPTFDQIVGML 130

Query: 75  EEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNGTIEPPQGIDW 130
                           +GGEP ++ D+P +I+   + G  ++ V TNG I   Q  D+
Sbjct: 131 RMLREEKPVPAPAVQFSGGEPTMRDDLPEIIRKAKELGMSQVQVATNG-IRLAQDPDY 187


>gi|212715676|ref|ZP_03323804.1| hypothetical protein BIFCAT_00576 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661043|gb|EEB21618.1| hypothetical protein BIFCAT_00576 [Bifidobacterium catenulatum DSM
           16992]
          Length = 280

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 40/140 (28%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G     + +   IE   
Sbjct: 58  RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYYEAMVKKIERYA 100

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG------TIEPPQGI 128
              +        +GGE ++Q     +  +     + G    ++T+G      T +    I
Sbjct: 101 DLFKATHGGITFSGGESMMQP--AFVSRVFHAAKEMGVHTCLDTSGFLGASYTDDMVDDI 158

Query: 129 DWICVSPKAGCDLKIKGGQE 148
           D +C+       L +K G E
Sbjct: 159 D-LCL-------LDVKSGDE 170


>gi|210615755|ref|ZP_03290736.1| hypothetical protein CLONEX_02954 [Clostridium nexile DSM 1787]
 gi|210150091|gb|EEA81100.1| hypothetical protein CLONEX_02954 [Clostridium nexile DSM 1787]
          Length = 294

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 21/114 (18%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFE-IAV 116
           T      V    +L+           ++  +TGGEPLL+ +V   I  L K +G E + +
Sbjct: 7   TWIPHSEVLTYEELLTVGKAAAALGIKHIKITGGEPLLRKNVTEFIARLKKTKGIETVTL 66

Query: 117 ETNGTIEPPQGIDWICVSPKAGCDL--------------KIKGGQELKLVFPQV 156
            TNG I  P  I+ +    KAG D               K+    E+K V+  +
Sbjct: 67  TTNG-ILLPNYIEQLS---KAGIDGINISLDTLEEKKFRKLTRNGEVKDVWKGI 116


>gi|167567507|ref|ZP_02360423.1| Radical SAM [Burkholderia oklahomensis EO147]
 gi|167574475|ref|ZP_02367349.1| Radical SAM [Burkholderia oklahomensis C6786]
          Length = 194

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 10/89 (11%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALN-KRGFEIAVETNGT 121
             V++    I+       K      ++GGEPL+Q +    L+  L+   G   A++T G 
Sbjct: 1   MTVNEAIAEIKPYIPF-LKMAGGVTVSGGEPLMQPEFVGALLSRLHDDYGLHTALDTQGY 59

Query: 122 IE------PPQGIDWICVSPKAGCDLKIK 144
           +           +D + +  K    +K +
Sbjct: 60  LARNVNSSWFDAVDLVLLDIKHIDPVKYR 88


>gi|145628477|ref|ZP_01784277.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           22.1-21]
 gi|144978947|gb|EDJ88633.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           22.1-21]
          Length = 229

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G   +V+ L   +     
Sbjct: 21  IRFILFMQGC-----------LMRCKYCHNRDT----WDLEGGKEISVEDLMKEVVTYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                G     +GGE +LQ +      +A    G    ++TNG
Sbjct: 66  FMNATGGGVTASGGEAVLQAEFVRDWFRACKAEGINTCLDTNG 108


>gi|145220160|ref|YP_001130869.1| GTP cyclohydrolase subunit MoaA [Prosthecochloris vibrioformis DSM
           265]
 gi|145206324|gb|ABP37367.1| GTP cyclohydrolase subunit MoaA [Chlorobium phaeovibrioides DSM
           265]
          Length = 351

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 24/113 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C  +      +   + +  +L  LI      G  + R   LT
Sbjct: 46  CNL-----------RCAYCMREEHESDSSGRTKMSFTELTTLISVLAEAGITKIR---LT 91

Query: 92  GGEPLLQVDVP-LIQALNKRG--FEIAVETNGTI-------EPPQGIDWICVS 134
           GGEPLL+ D+  L+           +++ TNG +           GID + +S
Sbjct: 92  GGEPLLRGDIADLVATAKNTPGIKTVSITTNGLLLDRHLDALLSAGIDAVNMS 144


>gi|95928890|ref|ZP_01311636.1| molybdenum cofactor synthesis-like [Desulfuromonas acetoxidans DSM
           684]
 gi|95135235|gb|EAT16888.1| molybdenum cofactor synthesis-like [Desulfuromonas acetoxidans DSM
           684]
          Length = 326

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +C++C ++              + L  + +     G ++ R   +TG
Sbjct: 12  NYLRLSVTDRCNLRCKYCMSEDGVAACQHNDILPYESLHLIAQAAVSMGIEKIR---VTG 68

Query: 93  GEPLLQVDV-PLIQALNKRG--FEIAVETNGTIEPPQGIDWI 131
           GEPL++  + P +  L+       +A+ TNG + P    D  
Sbjct: 69  GEPLVRNGIVPFLARLSAIDGLRHLAISTNGILLPEMAQDLF 110


>gi|311745156|ref|ZP_07718941.1| molybdenum cofactor biosynthesis protein A [Algoriphagus sp. PR1]
 gi|311302339|gb|EAZ81895.2| molybdenum cofactor biosynthesis protein A [Algoriphagus sp. PR1]
          Length = 338

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 17/91 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG-RYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C++C     GI  T      N D++  L       G K+ R   L
Sbjct: 30  CNL-----------RCQYC-MPEEGIPLTPSKFLMNADEIESLARTFVNLGVKKIR---L 74

Query: 91  TGGEPLLQVDVPLIQA-LNKRGFEIAVETNG 120
           TGGEPLL+ D   I A L++   ++++ TNG
Sbjct: 75  TGGEPLLRKDFEAILAKLSQFPVDLSITTNG 105


>gi|291523778|emb|CBK89365.1| pyruvate formate-lyase 1-activating enzyme [Eubacterium rectale DSM
           17629]
          Length = 249

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 22/109 (20%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GCN+           +C++C   DT     +          ++           
Sbjct: 26  VF--LKGCNM-----------RCKYCHNPDTWAKCGENDGAKLMTPQEVLKTAMRYKAY- 71

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG---TIEPP 125
            K+     ++GGE LLQ+D    L +   ++     ++T+G   T+E P
Sbjct: 72  WKQTGGITVSGGEALLQIDFVTELFKLAKEKCVNTCLDTSGNPFTVEEP 120


>gi|148508185|gb|ABQ75975.1| molybdopterin-based tungsten cofactor biosynthesis protein
           [uncultured haloarchaeon]
          Length = 572

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 58/165 (35%), Gaps = 39/165 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC   F    G  G   + + +  L+  Q I      R    +
Sbjct: 183 CNL-----------SCSFC---FASS-GPGGTHRSFETVEKLL--QTIVKSGGPRPIQFS 225

Query: 92  GGEPLLQVDVP-LIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
           GGEP ++ D+P +++   + GFE I + TNG IE  +         K G   ++      
Sbjct: 226 GGEPTVRDDLPEIVERAGQMGFEHIQINTNG-IELVE---------KKGYASRLSDAGVT 275

Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
            +      +  E Y            + G  L +    A+  C +
Sbjct: 276 AIYLQFDGLQSETYEA----------IRGVDLADLKREAVKTCRE 310


>gi|124003343|ref|ZP_01688193.1| elongator protein 3/MiaB/NifB, putative [Microscilla marina ATCC
           23134]
 gi|123991441|gb|EAY30872.1| elongator protein 3/MiaB/NifB, putative [Microscilla marina ATCC
           23134]
          Length = 354

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 20/92 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C+ C          +G   +   L  LI +    G +      L+
Sbjct: 36  CNL-----------RCKMC-----NHWRWRGAMLDRKILKKLIPDLAKLGCQRIH---LS 76

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           GGEP++  ++P  ++ + K+G ++ + TN T+
Sbjct: 77  GGEPMMYPNLPQAVKWMRKQGIKVTLTTNATL 108


>gi|308071401|ref|YP_003873006.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Paenibacillus
           polymyxa E681]
 gi|305860680|gb|ADM72468.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Paenibacillus
           polymyxa E681]
          Length = 467

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 30/106 (28%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK--GGRYNVDQLADLIE-EQWITGEKEGR 86
             CNL           +C +C     G +G     G+   +     ++     +GE E  
Sbjct: 117 QECNL-----------RCTYC----YGEEGEYNLKGKMTSEIAKSAVDFLIQQSGETEQL 161

Query: 87  YCVLTGGEPLLQVDVPLIQ----------ALNKRGFEIAVETNGTI 122
                GGEPLL  + PLIQ           ++K+ F  ++ TNGT+
Sbjct: 162 NITFFGGEPLL--NFPLIQETVQYVHEQSEIHKKKFSFSITTNGTL 205


>gi|206890819|ref|YP_002248648.1| radical SAM domain protein [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742757|gb|ACI21814.1| radical SAM domain protein [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 352

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 16/92 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR    + V              + D+               VLT
Sbjct: 16  CNLRC--------IHCRSSSEEIVKEHPDPSKEECFRTIDDIT-------SYAKPVLVLT 60

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D   +    N +G  + + TNGT+
Sbjct: 61  GGEPLLREDFFEIAAYANSKGLRVCLATNGTL 92


>gi|158321418|ref|YP_001513925.1| glycyl-radical activating family protein [Alkaliphilus oremlandii
           OhILAs]
 gi|158141617|gb|ABW19929.1| glycyl-radical enzyme activating protein family [Alkaliphilus
           oremlandii OhILAs]
          Length = 316

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG 120
            V +L ++IEE     E  G    L+GGE  +Q +    L+      G   A+ET G
Sbjct: 118 TVSELLEIIEEDTAFYEMSGGGVTLSGGEVTMQPEFATNLLMTCKNEGINTAIETCG 174


>gi|291561188|emb|CBL39987.1| Pyruvate-formate lyase-activating enzyme [butyrate-producing
           bacterium SS3/4]
          Length = 291

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 21/115 (18%)

Query: 24  AVFCRFSGCNL---WSGREQDRLSAQCRFCDTDF---VGIQGTKGGRYNVDQLADLIEEQ 77
            VF    GC++   W    ++ L  + R+   D    V  +GT G  Y+ D+L   + + 
Sbjct: 26  TVF--LKGCSIHCPWCSNPENLLHREQRYVKMDHNGKVEEEGTYGKWYSPDELYSEVIKD 83

Query: 78  WITGEKEGRY-----------CVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETN 119
                                   +GGE +LQ     P++Q LN       VET+
Sbjct: 84  KSFYGYCNANSATYLDSLPGGVTFSGGECMLQMKELDPMLQRLNDEQIHTIVETS 138


>gi|326201862|ref|ZP_08191732.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325987657|gb|EGD48483.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 346

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QV 99
            R + +C +C+ + +          +   L +LIE     G         TGGEP + Q 
Sbjct: 14  SRCNFRCVYCNPEGLWEDKEN---VSFKDLVELIEASRCNGITRIH---WTGGEPTIRQD 67

Query: 100 DVPLIQALNKRGFEIA-VETNG 120
              L++A  + G     + TNG
Sbjct: 68  LPELMKAAKEIGITQQIITTNG 89


>gi|118581741|ref|YP_902991.1| radical SAM domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118504451|gb|ABL00934.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379]
          Length = 423

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 12/92 (13%)

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF 112
           F+     K   + VD L   +E+   + +      ++ GGEP L  D+  +I  L K   
Sbjct: 186 FIPEGKCKLRHFPVDDLVSTVEKILQSVDVVNELSIV-GGEPFLHPDLADIIHKLQKHNK 244

Query: 113 --EIAVETNGTIEPPQGID--------WICVS 134
              + + TNGT+ P Q +         ++ VS
Sbjct: 245 VRRVEIATNGTVCPKQEVVKVLKGEKLYVTVS 276


>gi|327480682|gb|AEA83992.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           stutzeri DSM 4166]
          Length = 381

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 8/98 (8%)

Query: 27  CRF--SGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            R   SG  +W   E   +   QC FC ++       +    + D+  D++ +    G  
Sbjct: 8   LRLDGSGNPVWLLLELTYQCPLQCVFC-SNPRNFADYRREELSTDEWIDVMAQARAMGAV 66

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           +      +GGEP L+ D+  L+   ++ G+   + T+G
Sbjct: 67  Q---IGFSGGEPTLRKDLETLVAEADRMGYYTNLITSG 101


>gi|307822380|ref|ZP_07652612.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Methylobacter tundripaludum SV96]
 gi|307736946|gb|EFO07791.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Methylobacter tundripaludum SV96]
          Length = 369

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 22/119 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R + ++    ++E       +     +
Sbjct: 38  CNL-----------ACAGCGKIDYS--DDILDKRLSFEECMQAVDE------CDAPMVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
            GGEPL+  ++P +++ +  R   + + TN  +   + ID    SP     + + G QE
Sbjct: 79  PGGEPLIHKEMPQIVEGIIARKKFVYLCTN-ALLLKKRIDDYKPSPYLTFSIHLDGMQE 136


>gi|306795092|ref|ZP_07433394.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis SUMu005]
 gi|308336638|gb|EFP25489.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis SUMu005]
          Length = 344

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 25/105 (23%)

Query: 32  CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           CNL           +CR+C  + ++  +   +    +VD+++ +++     G  + R   
Sbjct: 56  CNL-----------RCRYCMPEAEYAWL--PRADLLSVDEISLIVDAFIAVGVDKIR--- 99

Query: 90  LTGGEPLLQVDVPLIQALNKR------GFE-IAVETNGTIEPPQG 127
           LTGGEPL++ D+  I  +         G + +A+ TNG +   Q 
Sbjct: 100 LTGGEPLIRSDLAAIIEVISAKVGDGSGLQDLAITTNGVLLADQA 144


>gi|289576050|ref|ZP_06456277.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis K85]
 gi|289540481|gb|EFD45059.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis K85]
          Length = 395

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 25/105 (23%)

Query: 32  CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           CNL           +CR+C  + ++  +   +    +VD+++ +++     G  + R   
Sbjct: 73  CNL-----------RCRYCMPEAEYAWL--PRADLLSVDEISLIVDAFIAVGVDKIR--- 116

Query: 90  LTGGEPLLQVDVPLIQALNKR------GFE-IAVETNGTIEPPQG 127
           LTGGEPL++ D+  I  +         G + +A+ TNG +   Q 
Sbjct: 117 LTGGEPLIRSDLAAIIEVISAKVGDGSGLQDLAITTNGVLLADQA 161


>gi|260206683|ref|ZP_05774174.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis K85]
          Length = 378

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 25/105 (23%)

Query: 32  CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           CNL           +CR+C  + ++  +   +    +VD+++ +++     G  + R   
Sbjct: 56  CNL-----------RCRYCMPEAEYAWL--PRADLLSVDEISLIVDAFIAVGVDKIR--- 99

Query: 90  LTGGEPLLQVDVPLIQALNKR------GFE-IAVETNGTIEPPQG 127
           LTGGEPL++ D+  I  +         G + +A+ TNG +   Q 
Sbjct: 100 LTGGEPLIRSDLAAIIEVISAKVGDGSGLQDLAITTNGVLLADQA 144


>gi|322419871|ref|YP_004199094.1| glycyl-radical enzyme activating protein family [Geobacter sp. M18]
 gi|320126258|gb|ADW13818.1| glycyl-radical enzyme activating protein family [Geobacter sp. M18]
          Length = 294

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
           G   +VD+L  ++ +  +  E  G     +GGEPL Q      L+      G   AV+T 
Sbjct: 93  GQETSVDELLQIVLKDRMFFEDSGGGVTFSGGEPLSQPAFLKELLNGCRAHGIHTAVDTA 152

Query: 120 GTIEPPQGID 129
               P   +D
Sbjct: 153 ALCPPETLLD 162


>gi|215447633|ref|ZP_03434385.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis T85]
 gi|294993731|ref|ZP_06799422.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis 210]
 gi|323718197|gb|EGB27379.1| molybdenum cofactor biosynthesis protein A 3 [Mycobacterium
           tuberculosis CDC1551A]
          Length = 370

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 25/105 (23%)

Query: 32  CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           CNL           +CR+C  + ++  +   +    +VD+++ +++     G  + R   
Sbjct: 48  CNL-----------RCRYCMPEAEYAWL--PRADLLSVDEISLIVDAFIAVGVDKIR--- 91

Query: 90  LTGGEPLLQVDVPLIQALNKR------GFE-IAVETNGTIEPPQG 127
           LTGGEPL++ D+  I  +         G + +A+ TNG +   Q 
Sbjct: 92  LTGGEPLIRSDLAAIIEVISAKVGDGSGLQDLAITTNGVLLADQA 136


>gi|188535004|ref|YP_001908801.1| pyrroloquinoline quinone biosynthesis protein PqqE [Erwinia
           tasmaniensis Et1/99]
 gi|226704990|sp|B2VL10|PQQE_ERWT9 RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|188030046|emb|CAO97932.1| Coenzyme PQQ synthesis protein E (Pyrroloquinoline quinone
           biosynthesis protein E) [Erwinia tasmaniensis Et1/99]
          Length = 382

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF   +       +  Q  ++ ++    G  +     
Sbjct: 11  PLWLLAELTYRCPLQCPYCSNPLDFAQQEKE----LSTAQWIEVFKQARAMGAVQ---IG 63

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +GGEPL++ D+P LI++  + GF   + T+G
Sbjct: 64  FSGGEPLVRKDLPELIRSARELGFYTNLITSG 95


>gi|154150386|ref|YP_001404004.1| radical SAM domain-containing protein [Candidatus Methanoregula
           boonei 6A8]
 gi|153998938|gb|ABS55361.1| Radical SAM domain protein [Methanoregula boonei 6A8]
          Length = 487

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           L +    +R +  C FC   F   +        + D++  +++               +G
Sbjct: 92  LANIDLTNRCNLDCDFC---FANARACGFVYEPSFDEIVGMMQVLRSEKPVPAPAVQFSG 148

Query: 93  GEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
           GEP ++ D+  +++   + GF ++ + TNG
Sbjct: 149 GEPTMRDDLVEIVKKAKELGFPQVQIATNG 178


>gi|308374842|ref|ZP_07437591.2| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis SUMu006]
 gi|308378273|ref|ZP_07482086.2| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis SUMu009]
 gi|308340502|gb|EFP29353.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis SUMu006]
 gi|308353061|gb|EFP41912.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis SUMu009]
          Length = 334

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 25/105 (23%)

Query: 32  CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           CNL           +CR+C  + ++  +   +    +VD+++ +++     G  + R   
Sbjct: 12  CNL-----------RCRYCMPEAEYAWL--PRADLLSVDEISLIVDAFIAVGVDKIR--- 55

Query: 90  LTGGEPLLQVDVPLIQALNKR------GFE-IAVETNGTIEPPQG 127
           LTGGEPL++ D+  I  +         G + +A+ TNG +   Q 
Sbjct: 56  LTGGEPLIRSDLAAIIEVISAKVGDGSGLQDLAITTNGVLLADQA 100


>gi|15842918|ref|NP_337955.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis CDC1551]
 gi|254233936|ref|ZP_04927261.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis C]
 gi|308372502|ref|ZP_07428891.2| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis SUMu004]
 gi|13883252|gb|AAK47769.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis CDC1551]
 gi|124599465|gb|EAY58569.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis C]
 gi|308333180|gb|EFP22031.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis SUMu004]
          Length = 395

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 25/105 (23%)

Query: 32  CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           CNL           +CR+C  + ++  +   +    +VD+++ +++     G  + R   
Sbjct: 73  CNL-----------RCRYCMPEAEYAWL--PRADLLSVDEISLIVDAFIAVGVDKIR--- 116

Query: 90  LTGGEPLLQVDVPLIQALNKR------GFE-IAVETNGTIEPPQG 127
           LTGGEPL++ D+  I  +         G + +A+ TNG +   Q 
Sbjct: 117 LTGGEPLIRSDLAAIIEVISAKVGDGSGLQDLAITTNGVLLADQA 161


>gi|31794507|ref|NP_857000.1| molybdenum cofactor biosynthesis protein A [Mycobacterium bovis
           AF2122/97]
 gi|121639250|ref|YP_979474.1| putative molybdenum cofactor biosynthesis protein A moaA1
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224991747|ref|YP_002646436.1| putative molybdenum cofactor biosynthesis protein A [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|308370225|ref|ZP_07420716.2| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis SUMu002]
 gi|308376074|ref|ZP_07445991.2| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis SUMu007]
 gi|31620103|emb|CAD95457.1| PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A MOAA1
           [Mycobacterium bovis AF2122/97]
 gi|121494898|emb|CAL73381.1| Probable molybdenum cofactor biosynthesis protein A moaA1
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224774862|dbj|BAH27668.1| putative molybdenum cofactor biosynthesis protein A [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|308325127|gb|EFP13978.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis SUMu002]
 gi|308344434|gb|EFP33285.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis SUMu007]
          Length = 354

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 25/105 (23%)

Query: 32  CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           CNL           +CR+C  + ++  +   +    +VD+++ +++     G  + R   
Sbjct: 32  CNL-----------RCRYCMPEAEYAWL--PRADLLSVDEISLIVDAFIAVGVDKIR--- 75

Query: 90  LTGGEPLLQVDVPLIQALNKR------GFE-IAVETNGTIEPPQG 127
           LTGGEPL++ D+  I  +         G + +A+ TNG +   Q 
Sbjct: 76  LTGGEPLIRSDLAAIIEVISAKVGDGSGLQDLAITTNGVLLADQA 120


>gi|215405341|ref|ZP_03417522.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis 02_1987]
 gi|215432291|ref|ZP_03430210.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis EAS054]
 gi|254365947|ref|ZP_04981992.1| hypothetical protein TBHG_03262 [Mycobacterium tuberculosis str.
           Haarlem]
 gi|289747146|ref|ZP_06506524.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis 02_1987]
 gi|289755450|ref|ZP_06514828.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis EAS054]
 gi|289759472|ref|ZP_06518850.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis T85]
 gi|306786201|ref|ZP_07424523.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis SUMu003]
 gi|306805136|ref|ZP_07441804.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis SUMu008]
 gi|50402224|sp|P62588|MOAA3_MYCBO RecName: Full=Molybdenum cofactor biosynthesis protein A 3
 gi|50402225|sp|P62589|MOAA3_MYCTU RecName: Full=Molybdenum cofactor biosynthesis protein A 3
 gi|2909380|emb|CAA76291.1| moaA [Mycobacterium tuberculosis]
 gi|134151460|gb|EBA43505.1| hypothetical protein TBHG_03262 [Mycobacterium tuberculosis str.
           Haarlem]
 gi|289687674|gb|EFD55162.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis 02_1987]
 gi|289696037|gb|EFD63466.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis EAS054]
 gi|289715036|gb|EFD79048.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis T85]
 gi|308329349|gb|EFP18200.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis SUMu003]
 gi|308348438|gb|EFP37289.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis SUMu008]
 gi|326902445|gb|EGE49378.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis W-148]
          Length = 378

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 25/105 (23%)

Query: 32  CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           CNL           +CR+C  + ++  +   +    +VD+++ +++     G  + R   
Sbjct: 56  CNL-----------RCRYCMPEAEYAWL--PRADLLSVDEISLIVDAFIAVGVDKIR--- 99

Query: 90  LTGGEPLLQVDVPLIQALNKR------GFE-IAVETNGTIEPPQG 127
           LTGGEPL++ D+  I  +         G + +A+ TNG +   Q 
Sbjct: 100 LTGGEPLIRSDLAAIIEVISAKVGDGSGLQDLAITTNGVLLADQA 144


>gi|282900472|ref|ZP_06308421.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194665|gb|EFA69613.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Cylindrospermopsis raciborskii CS-505]
          Length = 210

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 30/96 (31%), Gaps = 20/96 (20%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           GR AV     GC              C  C       Q        +  + DL E+    
Sbjct: 37  GRRAV-VWMQGCP-----------RHCSSC----FNPQSWSFEVNKLVAIDDLAEDILRN 80

Query: 81  GEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEI 114
            E  G     +GGEP LQ      L + L  RG  +
Sbjct: 81  SENTG--VTFSGGEPFLQAKSLAILARKLKARGLNV 114


>gi|288936373|ref|YP_003440432.1| glycyl-radical enzyme activating protein family [Klebsiella
           variicola At-22]
 gi|290510571|ref|ZP_06549941.1| pyruvate formate lyase activating enzyme [Klebsiella sp. 1_1_55]
 gi|288891082|gb|ADC59400.1| glycyl-radical enzyme activating protein family [Klebsiella
           variicola At-22]
 gi|289777287|gb|EFD85285.1| pyruvate formate lyase activating enzyme [Klebsiella sp. 1_1_55]
          Length = 299

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           G   NV+ +   +       ++ G    L+GGEP +   +   L +A ++ G   AVET
Sbjct: 101 GEEKNVEAIMATVLRDKPFYDRSGGGITLSGGEPFMNPTLAQALFEASHQAGIHTAVET 159


>gi|326204014|ref|ZP_08193875.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325985781|gb|EGD46616.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 454

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105
           C +C       +  +    + + +  +I+E ++ G +     +LTGGEPLL+ D+  +I 
Sbjct: 138 CPYCYAKAKQKETVEENSMDTEIVMRIIQEAFMLGIEG---ILLTGGEPLLRPDIYKIID 194

Query: 106 ALNKRGFEIAV 116
                 + I+V
Sbjct: 195 --CAASYHISV 203


>gi|302875317|ref|YP_003843950.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307688170|ref|ZP_07630616.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302578174|gb|ADL52186.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
          Length = 293

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C FC  T        K    + +    +++E     +    +   
Sbjct: 15  CNL-----------ACDFCPKTKR------KAQLMDYESFCKILDEIRPYTDYIYLHVK- 56

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             GEPL   ++   +    ++GF + + TNGT+
Sbjct: 57  --GEPLSHPELERFLDVSYEKGFMVNITTNGTL 87


>gi|206580344|ref|YP_002239527.1| glycyl-radical enzyme activating protein family [Klebsiella
           pneumoniae 342]
 gi|206569402|gb|ACI11178.1| glycyl-radical enzyme activating protein family [Klebsiella
           pneumoniae 342]
          Length = 299

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           G   NV+ +   +       ++ G    L+GGEP +   +   L +A ++ G   AVET
Sbjct: 101 GEEKNVEAIMATVLRDKPFYDRSGGGITLSGGEPFMNPTLAQALFEASHQAGIHTAVET 159


>gi|171056939|ref|YP_001789288.1| pyrroloquinoline quinone biosynthesis protein PqqE [Leptothrix
           cholodnii SP-6]
 gi|170774384|gb|ACB32523.1| coenzyme PQQ biosynthesis protein E [Leptothrix cholodnii SP-6]
          Length = 386

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R    C FC   +  +     G+      AD +             C  +
Sbjct: 17  PLWLLAEVTYRCPLHCVFC---YNPLDFAAQGKAQELPTADWLRVLREARALGAVQCGFS 73

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           GGEPL + D+  +I   ++ GF   + T+G
Sbjct: 74  GGEPLERDDLEEMIAEAHRLGFYTNLLTSG 103


>gi|123441843|ref|YP_001005826.1| pyruvate formate lyase-activating enzyme 1 [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122088804|emb|CAL11610.1| pyruvate formate-lyase 1 activating enzyme [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 215

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 31/163 (19%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101
           +C +C   DT         G    V++L              G     +GGE +LQ +  
Sbjct: 2   RCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFMNASGGGVTASGGEAILQAEFV 57

Query: 102 -PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155
               +A ++ G    ++TNG +        + +D          DL +   +++     Q
Sbjct: 58  RDWFRACHEEGIHTCLDTNGFVRRYDPVIDELLD--------ATDLVMLDLKQMDDSVHQ 109

Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
             V   N+   +F R+          + N    I Y    P W
Sbjct: 110 NLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV-PGW 143


>gi|313900896|ref|ZP_07834386.1| glycyl-radical enzyme activating protein family protein
           [Clostridium sp. HGF2]
 gi|312954316|gb|EFR35994.1| glycyl-radical enzyme activating protein family protein
           [Clostridium sp. HGF2]
          Length = 298

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTIE 123
           + D++     +     E+      L+GGE L Q      L+  L + G  +AVET G I+
Sbjct: 107 DADEVVATCLQDRDFYEESQGGVTLSGGEALAQPSFAKALVLRLKQEGIHVAVETTGYIQ 166

Query: 124 P 124
           P
Sbjct: 167 P 167


>gi|222055532|ref|YP_002537894.1| glycyl-radical enzyme activating protein family [Geobacter sp.
           FRC-32]
 gi|221564821|gb|ACM20793.1| glycyl-radical enzyme activating protein family [Geobacter sp.
           FRC-32]
          Length = 349

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 45  AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--P 102
           + CRF      G + T G   +++ + +      I     G    ++GGEPL+       
Sbjct: 96  SACRF------GARETVGKPLDMNAIVEEAVSDRIFYNNSGGGVTISGGEPLMYPAFTRE 149

Query: 103 LIQALN-KRGFEIAVET 118
           L + L  +    +AVET
Sbjct: 150 LTRILKVREDVHVAVET 166


>gi|15921671|ref|NP_377340.1| molybdenum cofactor biosynthesis protein A [Sulfolobus tokodaii
           str. 7]
 gi|24212000|sp|Q971H1|MOAA_SULTO RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|15622458|dbj|BAB66449.1| 313aa long hypothetical molybdenum cofactor biosynthesis protein A
           [Sulfolobus tokodaii str. 7]
          Length = 313

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 20/158 (12%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQ 105
           C FC    +  +       + ++++ L+ +  I  E   R   LTGGEP L +  + +I+
Sbjct: 24  CFFC---HMEGEDNSQSLLSPEEIS-LVAKVGI--EYGIRSVKLTGGEPTLRRDLLQIIR 77

Query: 106 ALNKRGF-EIAVETNG----TIEPPQ---GIDWICVS----PKAGCDLKIKGGQELKLVF 153
            L   G  E+++ TNG    T+       G+D + VS     K      I G   L  V 
Sbjct: 78  ELKDVGIKEVSMTTNGVLLSTLAWKLKEVGLDRVNVSLHSLDKQLFKE-ITGVDALDKVI 136

Query: 154 PQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191
             +  + +  +      F L   +   L+   N AI  
Sbjct: 137 EGIKEAIKAGLRPLKLNFVLTKKNISQLDNIINFAIET 174


>gi|148262587|ref|YP_001229293.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146396087|gb|ABQ24720.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 367

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 34  LWSGREQDRLSAQCRFCDTDF--VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           L +     R +  C  CD          +    ++  +   +I E    G         T
Sbjct: 47  LGTLMVTYRCNFHCAMCDMPLQASAQARSGMTEFDTARFLGIINEFAELGVPG---IGFT 103

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           GGEPLL+ D+  L+    + G    + TNG
Sbjct: 104 GGEPLLRDDIFDLLTETRRLGMIAHLNTNG 133


>gi|148254416|ref|YP_001239001.1| hypothetical protein BBta_2971 [Bradyrhizobium sp. BTAi1]
 gi|146406589|gb|ABQ35095.1| hypothetical protein BBta_2971 [Bradyrhizobium sp. BTAi1]
          Length = 382

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C                R    +  D  +E             + 
Sbjct: 38  CNLAC--------AGCG----KIDYPDAILNRRMTAQECWDAADECG------APMVAIP 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+  ++  +++ L  R   +++ TN  +   + +D    SP     + + G +E
Sbjct: 80  GGEPLIHKEIGEIVRGLVARKKFVSLCTN-ALLLEKKLDLFEPSPYLFFSVHLDGLRE 136


>gi|302538640|ref|ZP_07290982.1| predicted protein [Streptomyces sp. C]
 gi|302447535|gb|EFL19351.1| predicted protein [Streptomyces sp. C]
          Length = 317

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 19/94 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC            G+  VD  +  I      G        LT
Sbjct: 51  CNL-----------SCTFC----HNEGAPTSGKLTVDTASAAIAAATRAGFTR---VQLT 92

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124
           GGEPLL+ D+P  ++A  +   ++ V TNGT  P
Sbjct: 93  GGEPLLRPDIPDFVRAAREHVDDVGVTTNGTFLP 126


>gi|322419474|ref|YP_004198697.1| molybdenum cofactor biosynthesis protein A [Geobacter sp. M18]
 gi|320125861|gb|ADW13421.1| molybdenum cofactor biosynthesis protein A [Geobacter sp. M18]
          Length = 326

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 70/177 (39%), Gaps = 19/177 (10%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +C +C  +    + +     + ++L  +  E    G ++ R   +TG
Sbjct: 12  NYLRLSVTDRCNLRCSYCMPEDGVEKLSHCEMLSYEELLRISAEAVAAGIEKIR---ITG 68

Query: 93  GEPLLQVD-VPLIQALN-KRGF-EIAVETNGTI--EPPQGIDWICV--------SPKAGC 139
           GEPL++   +  +  L    G  E+ + TNG +  E  QG+    V        S K   
Sbjct: 69  GEPLVRKGILDFLSRLAVLPGLKELVLTTNGLLLKEMAQGLKDAGVQRLNISLDSLKPET 128

Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196
             KI  G +L+ V     +     +GF   + ++  M G   +E  +  +    + P
Sbjct: 129 FAKITRGGDLQRVLD--GIDEAERVGFPPHKINVVVMRGVNDDEMLDF-VELTLKRP 182


>gi|254173013|ref|ZP_04879687.1| radical SAM domain protein [Thermococcus sp. AM4]
 gi|214033169|gb|EEB73997.1| radical SAM domain protein [Thermococcus sp. AM4]
          Length = 590

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 18/105 (17%)

Query: 32  CNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           C L  G                 +R +  C +C   F   +G       ++Q+  ++   
Sbjct: 124 CPLDCGLCPRHRSHTSLLNIVLTNRCNLSCWYC--FFYAKEGQPIYEPTLEQIRMMLRNA 181

Query: 78  WITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
                        TGGEP L+ D+  +I+   + G+  I + T+G
Sbjct: 182 KKEYPIGANAVQFTGGEPTLRDDLIEIIKIAKEEGYDHIQLNTDG 226


>gi|118580355|ref|YP_901605.1| radical SAM domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118503065|gb|ABK99547.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379]
          Length = 727

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 38/122 (31%), Gaps = 32/122 (26%)

Query: 15  GEGGHAGRVAVFCRFSGCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGT 60
           GEG             GC    G   +              R + +C FC   F      
Sbjct: 69  GEGR------------GCPFDCGICSEHRQQSCTVLIEVTGRCNLRCPFC---FADSGDD 113

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVET 118
            G   +   LA                  ++GGEP ++ D+P +I      GF  I + T
Sbjct: 114 SGPDPSPADLAWRFLNALR-KSGPHNIVQISGGEPTVRDDLPEIISLGRTIGFPFIQLNT 172

Query: 119 NG 120
           NG
Sbjct: 173 NG 174


>gi|330833997|ref|YP_004408725.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4]
 gi|329566136|gb|AEB94241.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4]
          Length = 316

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 50/151 (33%), Gaps = 22/151 (14%)

Query: 47  CRFCDT--DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102
           C +C    +  G             L D + E +           +TGG+PLL +D  V 
Sbjct: 17  CYYCPVSENRFGKDNFYANELKTSDLQDFVYESYRMNALGAG---ITGGDPLLHLDRVVE 73

Query: 103 LIQALNKR---GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL--VFPQVN 157
           LI+ L       + + + T G       +           +L   G  E++   V PQ  
Sbjct: 74  LIKLLKAEFGTSYHVHLYTTGRYATRDAL----------SELLSVGLDEIRFHPVKPQYL 123

Query: 158 VSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
            + E  +G   E     P      E+ T L 
Sbjct: 124 SAVEKALGLGMEVGLEIPAIPGEEEKITKLI 154


>gi|328676842|gb|AEB27712.1| Radical SAM domain heme biosynthesis protein [Francisella cf.
           novicida Fx1]
          Length = 361

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 16/92 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       R S+ C          +      ++ ++   +I+             VL+
Sbjct: 16  CNLKCV--HCRSSSDC----------EVLGHPDFSTEEGFRIIDSIVAFA---NPVLVLS 60

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D+  L +    +G  +A+ TNG++
Sbjct: 61  GGEPLLRADIFELAEYGANKGLRMALATNGSL 92


>gi|297569660|ref|YP_003691004.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296925575|gb|ADH86385.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 346

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 18/94 (19%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            +GCNL            CR C   ++       G  +  +L   +E        +    
Sbjct: 27  LTGCNL-----------SCRHC---YINPDQHGRGPVSRHELMQWLE--LFATPNQESNL 70

Query: 89  VLTGGEPLLQVDVPL-IQALNKRGFE-IAVETNG 120
           +  GGEP L  D+   ++   + G+  I ++TNG
Sbjct: 71  IFLGGEPTLHPDLVSGVRRARELGYRGITIDTNG 104


>gi|225389655|ref|ZP_03759379.1| hypothetical protein CLOSTASPAR_03403 [Clostridium asparagiforme
           DSM 15981]
 gi|225044290|gb|EEG54536.1| hypothetical protein CLOSTASPAR_03403 [Clostridium asparagiforme
           DSM 15981]
          Length = 335

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 10/93 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK-EGRYCVLTGGEPLLQV 99
           DR + +CR+C        G +          + I        +   R+  +TGGEPL++ 
Sbjct: 18  DRCNLRCRYC-----MPDGVEWLPMEDILSYEEIGRVCRAAARLGIRHLKITGGEPLVRK 72

Query: 100 DVP-LIQALNK-RGFE-IAVETNGTIEPPQGID 129
             P LI +L    G E + + TNG I   Q +D
Sbjct: 73  GCPELIGSLKNIPGIEAVTITTNG-ILLEQHLD 104


>gi|189460140|ref|ZP_03008925.1| hypothetical protein BACCOP_00776 [Bacteroides coprocola DSM 17136]
 gi|189433130|gb|EDV02115.1| hypothetical protein BACCOP_00776 [Bacteroides coprocola DSM 17136]
          Length = 462

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 46  QCRFCDTDFVGIQGTKGGRYN---VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
           +C +C  +     G          VD+    +E+     +   +   L GGEPLL+ +  
Sbjct: 119 RCPYCFEERKKKDGKLKIAMTKEMVDKAYQAMEKIEPQQQLHCKDIALYGGEPLLKENRD 178

Query: 103 LIQAL----NKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144
           +++ +     ++G++    TNG  +    +D   +SP+    L+I 
Sbjct: 179 IVEYIVRKGCEKGYKFHALTNG-YDLDAFVDL--LSPELIYKLQIT 221


>gi|332162215|ref|YP_004298792.1| pyruvate formate lyase-activating enzyme 1 [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325666445|gb|ADZ43089.1| pyruvate formate lyase-activating enzyme 1 [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 215

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 31/163 (19%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101
           +C +C   DT         G    V++L              G     +GGE +LQ +  
Sbjct: 2   RCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFMNASGGGVTASGGEAILQAEFV 57

Query: 102 -PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155
               +A ++ G    ++TNG +        + +D          DL +   +++     Q
Sbjct: 58  RDWFRACHEEGIHTCLDTNGFVRRYDPVIDELLD--------ATDLVMLDLKQMDDSVHQ 109

Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
             V   N+   +F R+          + N    I Y    P W
Sbjct: 110 NLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV-PGW 143


>gi|228474586|ref|ZP_04059317.1| molybdenum cofactor biosynthesis protein A [Staphylococcus hominis
           SK119]
 gi|228271249|gb|EEK12617.1| molybdenum cofactor biosynthesis protein A [Staphylococcus hominis
           SK119]
          Length = 340

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D DFV +          D++  + +     G K+ R   +TGG
Sbjct: 22  DRCNFRCDYCMPKEIFGD-DFVFLPKE--ELLTFDEITTIAKVYAELGVKKLR---ITGG 75

Query: 94  EPLLQVDV-PLIQALNK-RGFE-IAVETNG 120
           EPLL+ D+  LI+ LN+  G E I + TNG
Sbjct: 76  EPLLRRDLYKLIEKLNRIEGIEDIGMTTNG 105


>gi|146339638|ref|YP_001204686.1| hypothetical protein BRADO2631 [Bradyrhizobium sp. ORS278]
 gi|146192444|emb|CAL76449.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
          Length = 382

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C                R +  +  D  +E             + 
Sbjct: 38  CNLAC--------AGCG----KIDYPDAILNRRMSAQECWDAADECG------APMVAIP 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+  ++  +++ L  R   +++ TN  +   + +D    SP     + + G +E
Sbjct: 80  GGEPLIHKEIGEIVRGLVARKKFVSLCTN-ALLLEKKLDLFEPSPYLFFSVHLDGLRE 136


>gi|323484393|ref|ZP_08089760.1| molybdenum cofactor biosynthesis protein A [Clostridium symbiosum
           WAL-14163]
 gi|323402387|gb|EGA94718.1| molybdenum cofactor biosynthesis protein A [Clostridium symbiosum
           WAL-14163]
          Length = 324

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 23/125 (18%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR +  C +C   ++ F+  +         +++     E  I G    R+  +TGGEPLL
Sbjct: 20  DRCNLNCAYCRPENSPFLSRKA----LLTSEEILAFCREAAILG---IRHIKITGGEPLL 72

Query: 98  QVD-VPLIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS---PKAGCDLKIK 144
           + D   +++ L K  G E + + TNG +           GID I +S   P   C   + 
Sbjct: 73  RTDCCSIVEKLKKTSGIETVTLTTNGLLLREHLGRLKEAGIDGINISMDTPDRACYAALT 132

Query: 145 GGQEL 149
           G   L
Sbjct: 133 GSDRL 137


>gi|312876158|ref|ZP_07736146.1| Radical SAM domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797144|gb|EFR13485.1| Radical SAM domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 355

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-P 102
           + +C + D  F  I+  + G    D+  ++++E    G        +TGGEPLL+ D+  
Sbjct: 30  TRKCTW-DCRFCYIEKHEEGELKTDEYFNILDELSSMGTF---VVTITGGEPLLRNDIFD 85

Query: 103 LIQALNKRGFEIAVETNG 120
           +     K+G  + + TNG
Sbjct: 86  IANYARKKGMGLILYTNG 103


>gi|312622812|ref|YP_004024425.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203279|gb|ADQ46606.1| Radical SAM domain protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 355

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-P 102
           + +C + D  F  I+  + G    D+  ++++E    G        +TGGEPLL+ D+  
Sbjct: 30  TRKCTW-DCRFCYIEKHEEGELKTDEYFNILDELSSMGTF---VVTITGGEPLLRNDIFD 85

Query: 103 LIQALNKRGFEIAVETNG 120
           +     K+G  + + TNG
Sbjct: 86  IANYARKKGMGLILYTNG 103


>gi|303234148|ref|ZP_07320794.1| radical SAM domain protein [Finegoldia magna BVS033A4]
 gi|302494689|gb|EFL54449.1| radical SAM domain protein [Finegoldia magna BVS033A4]
          Length = 423

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 17/103 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL      ++       CDT+ + I+           + + I       +        T
Sbjct: 72  CNLRCSYCYEKNI-----CDTERLMIEEENN------SIYEFIYRNIKKSDARIFNIEFT 120

Query: 92  GGEPLLQVD--VPLIQA----LNKRGFEIAVETNGTIEPPQGI 128
           GGEPLL       L+      L ++  + ++ TNG +   + I
Sbjct: 121 GGEPLLNKKYIFRLVNKINRNLKEKIIKYSLVTNGILLEKEDI 163


>gi|145639765|ref|ZP_01795367.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           PittII]
 gi|145271133|gb|EDK11048.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           PittII]
 gi|309750405|gb|ADO80389.1| Pyruvate formate-lyase activating enzyme [Haemophilus influenzae
           R2866]
          Length = 246

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G   +V+ L   +     
Sbjct: 21  IRFILFMQGC-----------LMRCKYCHNRDT----WDLEGGKEISVEDLMKEVVTYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                G     +GGE +LQ +      +A    G    ++TNG
Sbjct: 66  FMNATGGGVTASGGEAVLQAEFVRDWFRACKAEGINTCLDTNG 108


>gi|330808827|ref|YP_004353289.1| coenzyme PQQ synthesis protein E [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376935|gb|AEA68285.1| coenzyme PQQ synthesis protein E [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 389

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C          +G   + +Q   +  E    G  +  +   +
Sbjct: 23  PLWLLAELTYRCPLQCPYCSNPLDF--AEQGQELSTEQWFKVFREAREMGAAQLGF---S 77

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    + GF   + T+G
Sbjct: 78  GGEPLVRQDLAELIGEARRLGFYTNLITSG 107


>gi|301058107|ref|ZP_07199159.1| molybdenum cofactor biosynthesis protein A [delta proteobacterium
           NaphS2]
 gi|300447739|gb|EFK11452.1| molybdenum cofactor biosynthesis protein A [delta proteobacterium
           NaphS2]
          Length = 333

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 8/92 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLT 91
           N       DR + +C++C    +  +G +  R+ ++    +++    +          LT
Sbjct: 17  NYLRISITDRCNLRCQYC----MPPEGREKLRHEDILSYEEILRLARVAIRLGVDKIRLT 72

Query: 92  GGEPLLQVDVPLI--QALNKRGFE-IAVETNG 120
           GGEPL++ D PL+  + ++  G + +++ TNG
Sbjct: 73  GGEPLVRKDFPLLLPELMSIPGLKDVSITTNG 104


>gi|218887987|ref|YP_002437308.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758941|gb|ACL09840.1| Radical SAM domain protein [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 393

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            +       R + +C  C   +   I        + +Q   +I++            + +
Sbjct: 40  PVVVWNMTRRCNLKCVHC---YAQAIDPEGKDEISTEQGKAIIDDL---AAYGAPVMLFS 93

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122
           GGEPL+ Q  V L +    +G    + TNGT+
Sbjct: 94  GGEPLVRQDLVELAKHATTKGMRAVISTNGTL 125


>gi|145633596|ref|ZP_01789324.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           3655]
 gi|229845160|ref|ZP_04465294.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae
           6P18H1]
 gi|229847286|ref|ZP_04467389.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae
           7P49H1]
 gi|144985802|gb|EDJ92416.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           3655]
 gi|229809829|gb|EEP45552.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae
           7P49H1]
 gi|229811871|gb|EEP47566.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae
           6P18H1]
          Length = 246

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G   +V+ L   +     
Sbjct: 21  IRFILFMQGC-----------LMRCKYCHNRDT----WDLEGGKEISVEDLMKEVVTYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                G     +GGE +LQ +      +A  + G    ++TNG
Sbjct: 66  FMNATGGGVTASGGEAVLQAEFVRDWFRACKEEGINTCLDTNG 108


>gi|330812181|ref|YP_004356643.1| coenzyme PQQ synthesis protein E [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380289|gb|AEA71639.1| coenzyme PQQ synthesis protein E [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 389

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C          +G   + +Q   +  E    G  +  +   +
Sbjct: 23  PLWLLAELTYRCPLQCPYCSNPLDF--AEQGQELSTEQWFKVFREAREMGAAQLGF---S 77

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    LI    + GF   + T+G
Sbjct: 78  GGEPLVRQDLAELIGEARRLGFYTNLITSG 107


>gi|288573376|ref|ZP_06391733.1| Radical SAM domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288569117|gb|EFC90674.1| Radical SAM domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 312

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 13/101 (12%)

Query: 31  GCNLWSGREQDRLSAQC-------RFCDT--DFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           GC    G   D     C       + CD    F    G++GG  +   + +LI       
Sbjct: 76  GCPYDCGLCPDHRQGTCTAVLEVTKRCDLRCPFCFADGSEGG--SDVPVNELIRRLETLS 133

Query: 82  EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
           ++E     L+GGEP ++ D+P +++     GF  I + +NG
Sbjct: 134 KREECVLQLSGGEPTVRDDLPYIVERARSMGFDFIQLNSNG 174


>gi|225352289|ref|ZP_03743312.1| hypothetical protein BIFPSEUDO_03905 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157536|gb|EEG70875.1| hypothetical protein BIFPSEUDO_03905 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 280

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 36/138 (26%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G     + +   IE   
Sbjct: 58  RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYYEAMVKKIERYV 100

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG------TIEPPQGIDW 130
              +        +GGE ++Q      + +A  + G    ++T+G      T +    ID 
Sbjct: 101 DLFKATHGGITFSGGESMMQPAFVSRVFRAAKEMGVHTCLDTSGFLGASYTDDMLNDID- 159

Query: 131 ICVSPKAGCDLKIKGGQE 148
           +C+       L +K G E
Sbjct: 160 LCL-------LDVKSGDE 170


>gi|170761428|ref|YP_001788504.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408417|gb|ACA56828.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 300

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 43  LSAQCRFCD--TDFV--GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
              +C FC   T+F    ++   G      ++   I +  +  E+ G     +GGEP+L 
Sbjct: 80  DEGKCNFCGKCTNFCPNSVREYVGKDLTSQEIIKEIIKDEVFYEQSGGGVTFSGGEPMLH 139

Query: 99  VDVP--LIQALNKRGFEIAVETNG 120
            D    +++    RG    ++T+G
Sbjct: 140 ADFINGILEECKVRGIHTTIDTSG 163


>gi|159045713|ref|YP_001534507.1| putative nitrite reductase heme biosynthesis J protein
           [Dinoroseobacter shibae DFL 12]
 gi|157913473|gb|ABV94906.1| putative nitrite reductase heme biosynthesis J protein
           [Dinoroseobacter shibae DFL 12]
          Length = 404

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            +       R + +C+ C T    +     G     Q  + +E+    G  +    +L+G
Sbjct: 26  PVVIWNLTRRCNLKCKHCYTVSADVDFP--GELTAAQARETLED---IGRFKVPALILSG 80

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           GEPLL+ D+  L +        +A+ TNGT       D +
Sbjct: 81  GEPLLRDDLFALAKRARALTRVLALSTNGTGVIGSKADRV 120


>gi|305682301|dbj|BAJ16237.1| heme D1 biosynthesis protein NirJ [Rubrivivax gelatinosus IL144]
          Length = 406

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 17/101 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         +      D D+ G       +  VD + D ++        +    +L+
Sbjct: 41  CNLTCKHCYALSA------DHDYAGELS----KAEVDTVMDDLKA------YQVPVLILS 84

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           GGEPL++ D+  + +      F   + TNGT+      D I
Sbjct: 85  GGEPLMRPDLFEIAERAKAMRFYTGLSTNGTLIDAHCADRI 125


>gi|296125375|ref|YP_003632627.1| Radical SAM domain protein [Brachyspira murdochii DSM 12563]
 gi|296017191|gb|ADG70428.1| Radical SAM domain protein [Brachyspira murdochii DSM 12563]
          Length = 265

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +C +C  +   I+ +       +Q+  +++E    G K+ R   +TG
Sbjct: 10  NYIRVSVTDRCNLRCVYCMPEEGIIKKSHNEILTFEQIYSIVKEASELGIKKVR---ITG 66

Query: 93  GEPLLQVDVP 102
           GEPL++ ++ 
Sbjct: 67  GEPLVRKNIE 76


>gi|73670169|ref|YP_306184.1| arylsulfatase regulator [Methanosarcina barkeri str. Fusaro]
 gi|72397331|gb|AAZ71604.1| arylsulfatase regulator [Methanosarcina barkeri str. Fusaro]
          Length = 380

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 28/98 (28%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GC            A C +C          K    +++ + +++E         G     
Sbjct: 12  GCP-----------ANCSYC-----WSSEEKSPIMSIETIKEVVE---WLKTFRGDAVTF 52

Query: 91  T--GGEPLL-------QVDVPLIQALNKRGFEIAVETN 119
           T  GGEPLL       +    L++ L+ R    A++TN
Sbjct: 53  TFHGGEPLLAGAEFYREALPLLVEGLSPRKIAFAIQTN 90


>gi|226948345|ref|YP_002803436.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|226840836|gb|ACO83502.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 297

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD-LIEEQWITGEKEGRYCVL 90
           CNL            C FC       +  +  ++   ++ D ++++     +    +   
Sbjct: 20  CNL-----------ACDFC------PETRRKPQFMPIEIFDKILDQIKPYTDYIYFHVK- 61

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             GEPLL  D+   +    K+ F++ + TNGT+
Sbjct: 62  --GEPLLHPDIDKFLDLSYKKDFKVNITTNGTL 92


>gi|206564198|ref|YP_002234961.1| pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia
           cenocepacia J2315]
 gi|198040238|emb|CAR56221.1| coenzyme PQQ synthesis protein E [Burkholderia cenocepacia J2315]
          Length = 379

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
            LW   E   R    C FC   +  +   T G   + D    +I +    G  +      
Sbjct: 11  PLWLLAELTYRCPLHCAFC---YNPVDFATHGAELDTDAWRTVISDARALGAAQ---IGF 64

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           +GGEPL + D+  L+      GF   + T+G
Sbjct: 65  SGGEPLQRGDLETLVAHARGLGFYTNLITSG 95


>gi|126459538|ref|YP_001055816.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126249259|gb|ABO08350.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548]
          Length = 355

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 22/95 (23%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F  F+GCN            +C +C    +      G     + LA +   Q    E+
Sbjct: 135 TIF--FAGCNF-----------RCVYCQNWDISQDPEAGVEVTAEALAAM---QIRLREE 178

Query: 84  EGRYCVLTGGEPLLQVDVPLI----QALNKRGFEI 114
             R     GGEP    ++P I    + L +RG  +
Sbjct: 179 GARNINWVGGEPT--PNIPWILKSLKILARRGVNV 211


>gi|107025606|ref|YP_623117.1| pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia
           cenocepacia AU 1054]
 gi|116693212|ref|YP_838745.1| pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia
           cenocepacia HI2424]
 gi|105894980|gb|ABF78144.1| Coenzyme PQQ biosynthesis protein E [Burkholderia cenocepacia AU
           1054]
 gi|116651212|gb|ABK11852.1| coenzyme PQQ biosynthesis protein E [Burkholderia cenocepacia
           HI2424]
          Length = 379

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
            LW   E   R    C FC   +  +   T G   + D    +I +    G  +      
Sbjct: 11  PLWLLAELTYRCPLHCAFC---YNPVDFATHGAELDTDAWRTVISDARALGAAQ---IGF 64

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           +GGEPL + D+  L+      GF   + T+G
Sbjct: 65  SGGEPLQRGDLETLVAHARGLGFYTNLITSG 95


>gi|291300782|ref|YP_003512060.1| molybdenum cofactor biosynthesis protein A [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570002|gb|ADD42967.1| molybdenum cofactor biosynthesis protein A [Stackebrandtia
           nassauensis DSM 44728]
          Length = 347

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 10/85 (11%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           DR + +CR+C  + ++  +  T     + D+L  +       G  + R   LTGGEPLL+
Sbjct: 28  DRCNLRCRYCMPEEEYAWLSSTD--ILSFDELTTVASAFTELGVDKIR---LTGGEPLLR 82

Query: 99  V-DVPLIQALN--KRGFEIAVETNG 120
                LI  L   +R  +IA+ TNG
Sbjct: 83  PGLDELIGKLATDERITDIALTTNG 107


>gi|157147250|ref|YP_001454569.1| pyruvate formate lyase II activase [Citrobacter koseri ATCC
           BAA-895]
 gi|157084455|gb|ABV14133.1| hypothetical protein CKO_03042 [Citrobacter koseri ATCC BAA-895]
          Length = 213

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119
           G    +D+L   + +  +     G    L+GGE L+Q       +Q L + G   A+ET 
Sbjct: 16  GRDITLDELEREVMKDELFFRTSGGGVTLSGGEVLMQAAFATRFLQRLRRFGISCAIETA 75

Query: 120 G 120
           G
Sbjct: 76  G 76


>gi|89094965|ref|ZP_01167895.1| hypothetical protein MED92_14018 [Oceanospirillum sp. MED92]
 gi|89080749|gb|EAR59991.1| hypothetical protein MED92_14018 [Oceanospirillum sp. MED92]
          Length = 477

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 50/134 (37%), Gaps = 39/134 (29%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY-C 88
           +GCNL            C +C         ++G + +V+     +E        + +Y  
Sbjct: 111 TGCNL-----------SCTYCY-KEDLTTPSEGLKMSVETAIQSVEMLLKESPDQRQYNV 158

Query: 89  VLTGGEPLLQVDVPLIQA-----------LNKR-GFEIAVETNGTIEPPQGIDW------ 130
           V  GGEPL   ++PLI+            L  R  F +   TN T+     IDW      
Sbjct: 159 VFFGGEPL--SNMPLIREVVAYCERRFADLEARVDFTLT--TNATLLNEDLIDWFNEHRF 214

Query: 131 -ICVS---PKAGCD 140
            + +S   PKA  D
Sbjct: 215 GLTISMDGPKAMHD 228


>gi|323692405|ref|ZP_08106641.1| hypothetical protein HMPREF9475_01504 [Clostridium symbiosum
           WAL-14673]
 gi|323503545|gb|EGB19371.1| hypothetical protein HMPREF9475_01504 [Clostridium symbiosum
           WAL-14673]
          Length = 324

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 23/125 (18%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR +  C +C   ++ F+  +         +++     E  I G    R+  +TGGEPLL
Sbjct: 20  DRCNLNCAYCRPENSPFLSRKA----LLTSEEILAFCREAAILG---IRHIKITGGEPLL 72

Query: 98  QVD-VPLIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS---PKAGCDLKIK 144
           + D   +++ L K  G E + + TNG +           GID I +S   P   C   + 
Sbjct: 73  RTDCCSIVEKLKKTPGIETVTLTTNGLLLSEHLGRLKEAGIDGINISMDTPDRACYAALT 132

Query: 145 GGQEL 149
           G   L
Sbjct: 133 GSDRL 137


>gi|68248784|ref|YP_247896.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae
           86-028NP]
 gi|145635283|ref|ZP_01790986.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           PittAA]
 gi|145637339|ref|ZP_01792999.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           PittHH]
 gi|145641513|ref|ZP_01797091.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           R3021]
 gi|68056983|gb|AAX87236.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           86-028NP]
 gi|145267427|gb|EDK07428.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           PittAA]
 gi|145269431|gb|EDK09374.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           PittHH]
 gi|145273804|gb|EDK13672.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           22.4-21]
          Length = 246

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G   +V+ L   +     
Sbjct: 21  IRFILFMQGC-----------LMRCKYCHNRDT----WDLEGGKEISVEDLMKEVVTYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                G     +GGE +LQ +      +A    G    ++TNG
Sbjct: 66  FMNATGGGVTASGGEAVLQAEFVRDWFRACKAEGINTCLDTNG 108


>gi|76800690|ref|YP_325698.1| tRNA-modifying enzyme [Natronomonas pharaonis DSM 2160]
 gi|76556555|emb|CAI48126.1| predicted iron-sulfur oxidoreductase [Natronomonas pharaonis DSM
           2160]
          Length = 324

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 21/107 (19%)

Query: 38  REQDRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWI---------------- 79
               + + +C FC  D  G     G     + + +AD   E                   
Sbjct: 54  TPVVKCNERCVFCWRDHAGHAYELGDVEWDDPEAVADASIELQRKLLSGFGGNDEVPRDV 113

Query: 80  -TGEKEGRYCVLT-GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
                E R+  ++  GEP L   +P LI+A + R     + +NGT  
Sbjct: 114 FEEAMEPRHVAISLDGEPTLYPYLPELIEAFHDRDITTFLVSNGTRP 160


>gi|309972700|gb|ADO95901.1| Pyruvate formate-lyase activating enzyme [Haemophilus influenzae
           R2846]
          Length = 246

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G   +V+ L   +     
Sbjct: 21  IRFILFMQGC-----------LMRCKYCHNRDT----WDLEGGKEISVEDLMKEVVTYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                G     +GGE +LQ +      +A    G    ++TNG
Sbjct: 66  FMNATGGGVTASGGEAVLQAEFVRDWFRACKAEGINTCLDTNG 108


>gi|322383660|ref|ZP_08057411.1| pyruvate-formate lyase activating enzyme-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151872|gb|EFX44815.1| pyruvate-formate lyase activating enzyme-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 199

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 3/109 (2%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKR-GFEIAVETNGT 121
             V+++   IE              +TGGEP LQ      L +A   R      ++++G 
Sbjct: 1   MEVEEILAEIESYLPYYRSSNGGITVTGGEPTLQAHFVAELFKACKSRFQLHTTLDSSGF 60

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
            E     D + V+     DLKI   ++   +  Q N        +  + 
Sbjct: 61  CEIDNVQDLMDVTDLVLLDLKIIDREKHIRLTSQPNDRILKTAKWLSDH 109


>gi|311696028|gb|ADP98901.1| pyrroloquinoline quinone biosynthesis protein PqqE [marine
           bacterium HP15]
          Length = 378

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF   Q         ++   ++ +    G  +  +  
Sbjct: 12  PLWLLAELTYRCPLQCPYCSNPLDFAQTQ----QELTTEEWVSVLRQGRTMGAAQLGF-- 65

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
            +GGEPL+ Q    LI      G+   + T+G
Sbjct: 66  -SGGEPLVRQDLAELIAEARHLGYYTNLITSG 96


>gi|198284278|ref|YP_002220599.1| molybdenum cofactor biosynthesis protein A [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667275|ref|YP_002426939.1| molybdenum cofactor biosynthesis protein A [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248799|gb|ACH84392.1| molybdenum cofactor biosynthesis protein A [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218519488|gb|ACK80074.1| molybdenum cofactor biosynthesis protein A [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 342

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLI 104
           +C +C +   G        +   +  D +    I      R+   TGGEPLL    +  +
Sbjct: 37  RCSYC-SPEEGTPFFVRKDHLQAEEYDRLIR--IFSGLGVRHIRFTGGEPLLHPRILSFV 93

Query: 105 QALNKRGF-EIAVETNGTI 122
               + G  +I++ TNG +
Sbjct: 94  GFARRHGVGKISISTNGVL 112


>gi|330821974|ref|YP_004350836.1| hypothetical protein bgla_2g29090 [Burkholderia gladioli BSR3]
 gi|327373969|gb|AEA65324.1| hypothetical protein bgla_2g29090 [Burkholderia gladioli BSR3]
          Length = 386

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 23/142 (16%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +V +  + ++E             +
Sbjct: 38  CNL-----------ACNGCGKIDY--PDPILNQRLSVQECLEAVDEA------NAPIVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
            GGEPLL  D+P +++ + KR   + + TN  +   + +D    SP     + + G +E+
Sbjct: 79  AGGEPLLHRDMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDEYEPSPYFVWSVHLDGDREM 137

Query: 150 -KLVFPQVNVSPENYIGFDFER 170
                 Q  V  +        +
Sbjct: 138 HDHAVSQEGVYDKAVAAIKEAK 159


>gi|322805396|emb|CBZ02960.1| molybdenum cofactor biosynthesis enzyme and related Fe-S
           oxidoreductases [Clostridium botulinum H04402 065]
          Length = 261

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             ++    ++++     +    +     GEPLL  D+   +    K+GF++ + TNGT+
Sbjct: 1   MPIEIFDKILDQIKPYTDYIYFHVK---GEPLLHPDIDKFLDLSYKKGFKVNITTNGTL 56


>gi|254249963|ref|ZP_04943283.1| Radical SAM [Burkholderia cenocepacia PC184]
 gi|124876464|gb|EAY66454.1| Radical SAM [Burkholderia cenocepacia PC184]
          Length = 389

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
            LW   E   R    C FC   +  +   T G   + D    +I +    G  +      
Sbjct: 21  PLWLLAELTYRCPLHCAFC---YNPVDFATHGAELDTDAWRTVISDARALGAAQ---IGF 74

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           +GGEPL + D+  L+      GF   + T+G
Sbjct: 75  SGGEPLQRGDLETLVAHARGLGFYTNLITSG 105


>gi|86742173|ref|YP_482573.1| molybdenum cofactor biosynthesis protein A [Frankia sp. CcI3]
 gi|86569035|gb|ABD12844.1| GTP cyclohydrolase subunit MoaA [Frankia sp. CcI3]
          Length = 328

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 14/105 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C     G+    G R    D++  L+      G        LTGGEP+L+ 
Sbjct: 20  DRCNLRCTYC-MPAEGLAWLPGERMLTDDEVVRLV--GVAVGRLGVTEVRLTGGEPMLRP 76

Query: 100 -DVPLIQALNKR--GFEIAVETNGTIEP-------PQGIDWICVS 134
             V L+  L       E++V TNG I           G+D I VS
Sbjct: 77  GLVELVARLAALRPRPELSVTTNGLILARLAGPLRAAGLDRINVS 121


>gi|332111897|gb|EGJ11875.1| radical SAM domain-containing protein [Rubrivivax benzoatilyticus
           JA2]
          Length = 406

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 15/119 (12%)

Query: 19  HAG-RVAVFCRF---SGCNLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADL 73
             G   A   R    SG  +       R +  C+ C   +         G  +  ++  +
Sbjct: 16  RTGAWPA--VRTPRPSG-PVVIWNLIRRCNLTCKHC---YALSADHDYAGELSKAEVGTV 69

Query: 74  IEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           +++       +    +L+GGEPL++ D+  + +      F   + TNGT+      D I
Sbjct: 70  MDDLKA---YQVPVLILSGGEPLMRPDLFEIAERAKAMRFYTGLSTNGTLIDLPTADRI 125


>gi|295318511|gb|ADF98888.1| radical SAM domain protein [Clostridium botulinum F str. 230613]
          Length = 261

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
             ++    ++++     +    +     GEPLL  D+   +    K+GF++ + TNGT+
Sbjct: 1   MPIEIFDKILDQIKPYTDYIYFHVK---GEPLLHPDIDKFLDLSYKKGFKVNITTNGTL 56


>gi|294792210|ref|ZP_06757358.1| molybdenum cofactor biosynthesis protein A [Veillonella sp. 6_1_27]
 gi|294457440|gb|EFG25802.1| molybdenum cofactor biosynthesis protein A [Veillonella sp. 6_1_27]
          Length = 321

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 21/107 (19%)

Query: 27  CRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            R S    CN             C +C       + T   +  +  + + +         
Sbjct: 12  VRLSLTDACNFC-----------CPYC----RPAEITPQSQTQLLSVDEWMTILGAFHHI 56

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGFE--IAVETNGTIEPPQG 127
             +   LTGGEPLL   +  L+  + + G+   I++ TNG++   + 
Sbjct: 57  GVKAVRLTGGEPLLYPHIEELLGRIKESGWFEDISMTTNGSLLASRA 103


>gi|300022082|ref|YP_003754693.1| coenzyme PQQ biosynthesis protein E [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299523903|gb|ADJ22372.1| coenzyme PQQ biosynthesis protein E [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 383

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   +   +C +C ++ V            ++   ++      G  +  +   T
Sbjct: 16  PLWLVLELTYKCPLKCPWC-SNPVDFD-QYRNELTTEEWKKVLRAGRRLGSLQLGF---T 70

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           GGEP+L+ D+  L+   +  G+   + T+G
Sbjct: 71  GGEPMLRNDLEELVAEADSLGYYTNLITSG 100


>gi|228927225|ref|ZP_04090288.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229121710|ref|ZP_04250933.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           95/8201]
 gi|228661754|gb|EEL17371.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           95/8201]
 gi|228832551|gb|EEM78125.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 337

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  +Q         D++  L       G  + R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPD--YAFLQEEF--LLTFDEIERLARLFIRMGVNKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQALNKRG--FEIAVETNG 120
           GEPLL+ D+P LI  L K     +I + TNG
Sbjct: 75  GEPLLRKDLPHLIARLAKLDGLKDIGLTTNG 105


>gi|213692582|ref|YP_002323168.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213524043|gb|ACJ52790.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320458734|dbj|BAJ69355.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 293

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 40/140 (28%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G    +D +   ++   
Sbjct: 71  RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLDAMIKKVDRYK 113

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQA-LNKR---GFEIAVETNG------TIEPPQGI 128
              +        +GGE ++Q     +    +     G    ++T+G      T E  + I
Sbjct: 114 DLFKATHGGITFSGGESMMQP--AFVSRVFHAAREMGVHTCLDTSGFLNTSYTDEMLEDI 171

Query: 129 DWICVSPKAGCDLKIKGGQE 148
           D +C+       L +K G E
Sbjct: 172 D-LCL-------LDVKSGDE 183


>gi|167588114|ref|ZP_02380502.1| pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia
           ubonensis Bu]
          Length = 378

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
            LW   E   R    C FC   +  +   T G   + D    +I +    G  +      
Sbjct: 11  PLWLLAELTYRCPLHCAFC---YNPVDFATHGPELDTDAWRTVISDARALGAAQ---IGF 64

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           +GGEPL + D+  L+      GF   + T+G
Sbjct: 65  SGGEPLQRGDLETLVAHARGLGFYTNLITSG 95


>gi|228920856|ref|ZP_04084195.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228838787|gb|EEM84089.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 337

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  +Q         D++  L       G  + R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPD--YAFLQEEF--LLTFDEIERLARLFISMGVNKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQAL-NKRGFE-IAVETNG 120
           GEPLL+ D+P LI  L    G + I + TNG
Sbjct: 75  GEPLLRKDLPQLIARLTKLEGLKDIGLTTNG 105


>gi|224824383|ref|ZP_03697491.1| Radical SAM domain protein [Lutiella nitroferrum 2002]
 gi|224603802|gb|EEG09977.1| Radical SAM domain protein [Lutiella nitroferrum 2002]
          Length = 394

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         +      DT F        G  +  ++  ++E+    G       +L+
Sbjct: 36  CNLTCKHCYSVSA------DTVF-------PGELSTAEVFTVMEDLRAFG---VPVLILS 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPL++ D+  + Q   + GF + + +NGT+
Sbjct: 80  GGEPLMRPDIYDIGQRAKQLGFYVGLSSNGTL 111


>gi|221201327|ref|ZP_03574366.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           multivorans CGD2M]
 gi|221208807|ref|ZP_03581805.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           multivorans CGD2]
 gi|221214113|ref|ZP_03587086.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           multivorans CGD1]
 gi|221166290|gb|EED98763.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           multivorans CGD1]
 gi|221171263|gb|EEE03712.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           multivorans CGD2]
 gi|221178595|gb|EEE11003.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           multivorans CGD2M]
          Length = 370

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 15/109 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C    V  +      ++     + IE    I          +TGGEPLL+ 
Sbjct: 45  DRCNFRCVYCMPREVFGKDYPFLPHSALLTHEEIERVARIFVAHGVEKIRITGGEPLLRK 104

Query: 100 DVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           ++  LI+ L +      R  ++ + TNG++           G+  + VS
Sbjct: 105 NLEFLIERLARLTTRDGRPLDLTLTTNGSLLARKARALKDAGLTRVTVS 153


>gi|297203855|ref|ZP_06921252.1| radical SAM domain-containing protein [Streptomyces sviceus ATCC
           29083]
 gi|197711911|gb|EDY55945.1| radical SAM domain-containing protein [Streptomyces sviceus ATCC
           29083]
          Length = 340

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 38  CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  +++ L  +   + + TN  +   + +D    SP     + I G +E
Sbjct: 80  GGEPLMHPQIDEIVRQLVAKKKYVFLCTN-AMLLRKKMDKFKPSPYFAFAVHIDGLRE 136


>gi|126459981|ref|YP_001056259.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126249702|gb|ABO08793.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548]
          Length = 356

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 9/91 (9%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           LW        + +C +C   F           +   +   I E               GG
Sbjct: 2   LWFLLTTGACNLRCNYCGGSFSQKHSPWRPTVSPGDVVKFIAE-----RDSSPTVFFYGG 56

Query: 94  EPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
           EPLL VD  V +++AL    F I   TNGT+
Sbjct: 57  EPLLNVDYIVQVMEALPHARFGIQ--TNGTL 85


>gi|161525364|ref|YP_001580376.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           multivorans ATCC 17616]
 gi|189349899|ref|YP_001945527.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           multivorans ATCC 17616]
 gi|160342793|gb|ABX15879.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           multivorans ATCC 17616]
 gi|189333921|dbj|BAG42991.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           multivorans ATCC 17616]
          Length = 370

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 15/109 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C    V  +      ++     + IE    I          +TGGEPLL+ 
Sbjct: 45  DRCNFRCVYCMPREVFGKDYPFLPHSALLTHEEIERVARIFVAHGVEKIRITGGEPLLRK 104

Query: 100 DVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVS 134
           ++  LI+ L +      R  ++ + TNG++           G+  + VS
Sbjct: 105 NLEFLIERLARLTTREGRPLDLTLTTNGSLLARKARALKDAGLTRVTVS 153


>gi|83311391|ref|YP_421655.1| Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
 gi|82946232|dbj|BAE51096.1| Predicted Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
          Length = 442

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 16/98 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +     +    +    +  D + + +  +      +  + +  
Sbjct: 169 CNLRCTM--------CGW----EIWKDNSG---FMEDAVFERVIAEGKACGIKTMHILAG 213

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGI 128
            GEP L   V  +++     GF++ + TNGT   P  I
Sbjct: 214 QGEPFLHPRVFEMLERAVAEGFQVGIVTNGTPFTPDKI 251


>gi|84497391|ref|ZP_00996213.1| hypothetical protein JNB_14393 [Janibacter sp. HTCC2649]
 gi|84382279|gb|EAP98161.1| hypothetical protein JNB_14393 [Janibacter sp. HTCC2649]
          Length = 515

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 50  CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALN 108
           C T F            ++Q+   I+ +           +L+GGEP+L      L++A+ 
Sbjct: 123 CPTCFAESSPALASVAPLEQVLASIDTRLSRENGRIDVLMLSGGEPMLYPQLEELLEAVI 182

Query: 109 KRGF-EIAVETNG 120
            R    I + TNG
Sbjct: 183 ARPIVRILINTNG 195


>gi|307705441|ref|ZP_07642296.1| hypothetical protein ydeM [Streptococcus mitis SK597]
 gi|307620976|gb|EFO00058.1| hypothetical protein ydeM [Streptococcus mitis SK597]
          Length = 352

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 16/96 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C  +    + +    Y+  ++ + I ++    + +      T
Sbjct: 3   CNLT-----------CSYCFENDKDRKPSLSSEYDGKKIVNFILDELNFKKYKSLDICFT 51

Query: 92  GGEPL--LQVDVPLIQALNKR---GFEIAVETNGTI 122
           GGEPL   Q    L + L+++        + TNGTI
Sbjct: 52  GGEPLYNFQFIRNLCETLDEKLAIPISYTLITNGTI 87


>gi|302339995|ref|YP_003805201.1| pyruvate formate-lyase activating enzyme [Spirochaeta smaragdinae
           DSM 11293]
 gi|301637180|gb|ADK82607.1| pyruvate formate-lyase activating enzyme [Spirochaeta smaragdinae
           DSM 11293]
          Length = 245

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 54/178 (30%), Gaps = 52/178 (29%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C +C   DT     + T G      ++ +   +   
Sbjct: 22  IRFLIFTQGCPL-----------RCLYCHNPDT----WKRTGGKEVTAHEIIETARKYKN 66

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEP------PQGIDWI 131
                G    +TGGEPL Q D    L+      G   AV+T+G   P          D +
Sbjct: 67  YLLASGGGITITGGEPLFQADFVQALLLEAKAAGIHTAVDTSGFAPPAARKAVLPHADLV 126

Query: 132 CVSPKAGCDLKIKGG------------QELK----------LVFPQVNVSPENYIGFD 167
            +  K+      K               ELK          +V P +   PE+     
Sbjct: 127 LLDIKSAVPALFKKISGVSITYTLATLNELKEWNVPVWIRHVVVPGLTDKPEDAEKLA 184


>gi|170737521|ref|YP_001778781.1| coenzyme PQQ biosynthesis protein E [Burkholderia cenocepacia
           MC0-3]
 gi|169819709|gb|ACA94291.1| coenzyme PQQ biosynthesis protein E [Burkholderia cenocepacia
           MC0-3]
          Length = 379

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
            LW   E   R    C FC   +  +   T G   + D    +I +    G  +      
Sbjct: 11  PLWLLAELTYRCPLHCAFC---YNPVDFATHGAELDTDAWRTVISDARALGAAQ---IGF 64

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           +GGEPL + D+  L+      GF   + T+G
Sbjct: 65  SGGEPLQRGDLETLVAHARGLGFYTNLITSG 95


>gi|317484665|ref|ZP_07943566.1| radical SAM superfamily protein [Bilophila wadsworthia 3_1_6]
 gi|316924021|gb|EFV45206.1| radical SAM superfamily protein [Bilophila wadsworthia 3_1_6]
          Length = 395

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            +       R + +C  C   +   +        + +Q   +I +            + +
Sbjct: 40  PVVVWNMTRRCNLKCVHC---YAQAVDPDGKDEISTEQGKAIISDL---AAYGAPVMLFS 93

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122
           GGEPL+ Q    L     ++G    + TNGT+
Sbjct: 94  GGEPLVRQDLPELASYATEKGMRAVISTNGTL 125


>gi|313112748|ref|ZP_07798396.1| molybdenum cofactor biosynthesis protein A [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624947|gb|EFQ08254.1| molybdenum cofactor biosynthesis protein A [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 322

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 65/184 (35%), Gaps = 35/184 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +CR+C        G       ++    + +    +  +       +
Sbjct: 20  CNL-----------RCRYC-----MPDGVPKLAHEDILTYEEFLRLAALFAQCGIDTVRI 63

Query: 91  TGGEPLLQVDVP-LIQALNK-RGF-EIAVETNGTI-------EPPQGIDWICVSPKAGCD 140
           TGGEPL++  V  L   L    G   +A+ TNG +           G+D + +S      
Sbjct: 64  TGGEPLVRRGVEQLTAGLKAIPGIRRVALTTNGVLLAQKLPALLAAGLDSVNISLDTLHP 123

Query: 141 L---KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP- 196
               +I G  EL  V  Q  +      G   +   + P  G    E  +LA ++  ++P 
Sbjct: 124 ETFRRITGKDELAAV--QNGIRAALASGIPVKLNCV-PQPGVNEGELESLA-AFAQEHPL 179

Query: 197 KWRL 200
           + R 
Sbjct: 180 QVRF 183


>gi|304438271|ref|ZP_07398212.1| pyruvate formate-lyase activating enzyme [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304368637|gb|EFM22321.1| pyruvate formate-lyase activating enzyme [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 251

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 22/102 (21%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
            E F ++ G G        VF    GC             +C++C        G    R 
Sbjct: 11  TESFGSVDGPGIRFI----VFV--QGC-----------RYRCQYCHNPETWGLGGGEERT 53

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
             D L   +  +    E+ G    ++GGEPLLQ  +P +   
Sbjct: 54  PADVLRQALRYRPYWKERGG--ITVSGGEPLLQ--LPFVTEF 91


>gi|303247822|ref|ZP_07334090.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
 gi|302490723|gb|EFL50624.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
          Length = 453

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 18/94 (19%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            + CNL            C  C   F     T      V  L++      I         
Sbjct: 100 TARCNL-----------SCPVC---FASAGNTPPPDPEVPALSERFAR--IFEATGPVNV 143

Query: 89  VLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
            L+GGEP ++ D+P ++ A  K GF  + + TNG
Sbjct: 144 QLSGGEPTVRNDLPEVVAACRKAGFSFVQLNTNG 177


>gi|294816069|ref|ZP_06774712.1| Radical SAM domain protein [Streptomyces clavuligerus ATCC 27064]
 gi|326444411|ref|ZP_08219145.1| hypothetical protein SclaA2_25236 [Streptomyces clavuligerus ATCC
           27064]
 gi|294328668|gb|EFG10311.1| Radical SAM domain protein [Streptomyces clavuligerus ATCC 27064]
          Length = 340

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 38  CNLAC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  +++ L  R   + + TN  +   + +D    S      + I G +E
Sbjct: 80  GGEPLMHPQIDEIVRELVARRKYVFLCTN-ALLLRKKLDKFTPSRYFAFAVHIDGLRE 136


>gi|289577626|ref|YP_003476253.1| radical SAM protein [Thermoanaerobacter italicus Ab9]
 gi|289527339|gb|ADD01691.1| Radical SAM domain protein [Thermoanaerobacter italicus Ab9]
          Length = 453

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 19/104 (18%)

Query: 22  RVAVFCR-FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           +   F    + CNL            C +C   +     +K    +   +  ++    + 
Sbjct: 84  KPQFFIYVTTECNL-----------NCPYC---YQRDYKSKNITISKKHVDSVVTTIDLL 129

Query: 81  GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI--AVE--TNG 120
            +KE ++ V+ GGEPLL  +  +I+ +  R   I   VE  TNG
Sbjct: 130 SKKENKHLVIFGGEPLLPQNKQIIEYMFDRFKTIDATVEIVTNG 173


>gi|238789327|ref|ZP_04633114.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia frederiksenii
           ATCC 33641]
 gi|238722659|gb|EEQ14312.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia frederiksenii
           ATCC 33641]
          Length = 215

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 31/163 (19%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101
           +C +C   DT         G    V++L              G     +GGE +LQ +  
Sbjct: 2   RCLYCHNRDT----WDTHGGKEVTVEELVKEAITYRHFMNASGGGVTASGGEAILQAEFV 57

Query: 102 -PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155
               +A ++ G    ++TNG +        + +D          DL +   +++     Q
Sbjct: 58  RDWFRACHEEGIHTCLDTNGFVRRYDPVIDELLD--------ATDLVMLDLKQMDDSVHQ 109

Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
             V   N+   +F R+          + N    I Y    P W
Sbjct: 110 NLVGVSNHRTLEFARY--------LAKRNQKTWIRYVVV-PGW 143


>gi|298529802|ref|ZP_07017205.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511238|gb|EFI35141.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 360

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 17/96 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C            G  +  Q   LI+     G       + T
Sbjct: 28  CNL-----------ACSHC--RAEAHPEPYPGELDTAQARSLIDTFPQVG---NPVVIFT 71

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           GGEPLL+ D+  LI   + +G    +  NGT+  P+
Sbjct: 72  GGEPLLRPDIFELISYADSQGLRCVMAPNGTLITPE 107


>gi|218903282|ref|YP_002451116.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH820]
 gi|218538331|gb|ACK90729.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH820]
          Length = 337

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  +Q         D++  L       G  + R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPD--YAFLQEEF--LLTFDEIERLARLFIRMGVNKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQALNKRG--FEIAVETNG 120
           GEPLL+ D+P LI  L K     +I + TNG
Sbjct: 75  GEPLLRKDLPHLIARLAKLDGLKDIGLTTNG 105


>gi|297543929|ref|YP_003676231.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841704|gb|ADH60220.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 453

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 19/104 (18%)

Query: 22  RVAVFCR-FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           +   F    + CNL            C +C   +     +K    +   +  ++    + 
Sbjct: 84  KPQFFIYVTTECNL-----------NCPYC---YQRDYKSKNITISKKHVDSVVTTIDLL 129

Query: 81  GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI--AVE--TNG 120
            +KE ++ V+ GGEPLL  +  +I+ +  R   I   VE  TNG
Sbjct: 130 SKKENKHLVIFGGEPLLPQNKQIIEYMFDRFKTIDATVEIVTNG 173


>gi|254515478|ref|ZP_05127538.1| molybdenum cofactor biosynthesis protein A [gamma proteobacterium
           NOR5-3]
 gi|219675200|gb|EED31566.1| molybdenum cofactor biosynthesis protein A [gamma proteobacterium
           NOR5-3]
          Length = 361

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 13/87 (14%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  FV     K     +++LA + +     G ++ R   LTGGEPL+
Sbjct: 51  DRCDFRCVYCMAEDMTFV----PKSEILTLEELAQVAQAFVNLGVRKIR---LTGGEPLV 103

Query: 98  -QVDVPLIQALNKR-GF-EIAVETNGT 121
               + L++ L    G  E+ + TNG+
Sbjct: 104 RHNIMQLVEQLGAMPGLDELVMTTNGS 130


>gi|218281753|ref|ZP_03488109.1| hypothetical protein EUBIFOR_00677 [Eubacterium biforme DSM 3989]
 gi|218217204|gb|EEC90742.1| hypothetical protein EUBIFOR_00677 [Eubacterium biforme DSM 3989]
          Length = 241

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 24/101 (23%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC++           +C+FC   DT        K    NV+ +           
Sbjct: 23  IFM--QGCHM-----------RCKFCHNADT-----WKVKEPDQNVETVLKKALRYRPY- 63

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
            KE     ++GGEPLLQ+D  + L     K G    ++T G
Sbjct: 64  WKENGGITVSGGEPLLQIDFLIELFTQAKKEGVHTTLDTCG 104


>gi|121534710|ref|ZP_01666531.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
 gi|121306730|gb|EAX47651.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
          Length = 327

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 7/82 (8%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104
            C  C   +      +       +   L+ E    G    +  +L+GGEPLL+ D+  LI
Sbjct: 14  NCLHC---YRDAGAKRADELTTAEGKKLLGEIAKAG---FKIMILSGGEPLLRPDIYELI 67

Query: 105 QALNKRGFEIAVETNGTIEPPQ 126
           +     G    + TNGT+  P+
Sbjct: 68  RHARAVGLRPVIGTNGTLIAPE 89


>gi|25989718|gb|AAN75022.1| Pfla [Rhodospirillum rubrum]
          Length = 201

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 88  CVLTGGEPLLQVDV--PLIQALNKR-GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144
             ++GGEPL+Q D    L+  L  + G   A++T G +       W    P     L IK
Sbjct: 30  VTVSGGEPLMQADFTGALLARLKDQLGLHTALDTQGFLHAGVSDRWF--DPVDLVLLDIK 87

Query: 145 GGQ 147
              
Sbjct: 88  HSD 90


>gi|328542189|ref|YP_004302298.1| Nitrite reductase heme biosynthesis J protein [Polymorphum gilvum
           SL003B-26A1]
 gi|326411939|gb|ADZ69002.1| Nitrite reductase heme biosynthesis J protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 406

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 7/101 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            +       R + +CR C T          G  + D+   ++++    G       +L+G
Sbjct: 28  PVVIWNLTRRCNLRCRHCYT--TSADVPFPGELSHDEAMAVLDDLKAFGIPA---LILSG 82

Query: 93  GEPL-LQVDVPLIQALNKRGFE-IAVETNGTIEPPQGIDWI 131
           GEPL       L +      F  +A+ TNGT       D +
Sbjct: 83  GEPLSRFDFFELAERARDLKFRHLALSTNGTRLAGANADRV 123


>gi|209519755|ref|ZP_03268542.1| pyruvate formate-lyase activating enzyme [Burkholderia sp. H160]
 gi|209499828|gb|EDZ99896.1| pyruvate formate-lyase activating enzyme [Burkholderia sp. H160]
          Length = 284

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF    +GC             +C+FC   DT         G    V +    I +   
Sbjct: 62  IRFVAFLTGC-----------WLRCQFCHNPDT----WHKHNGHPVTVARAMREIGKYAQ 106

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
             +       L+GGEP++Q +  + + +   + G    ++T+G
Sbjct: 107 VLKISRGGLTLSGGEPMVQREFTMEIFRRCKQLGLHTCIDTSG 149


>gi|301168830|emb|CBW28421.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae
           10810]
          Length = 246

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G   +V+ L   +     
Sbjct: 21  IRFILFMQGC-----------LMRCKYCHNRDT----WDLEGGKEISVEDLMKEVVTYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                G     +GGE +LQ +      +A  + G    ++TNG
Sbjct: 66  FMNATGGGVTASGGEAVLQAEFVRDWFRACKEEGINTCLDTNG 108


>gi|251794635|ref|YP_003009366.1| radical SAM protein [Paenibacillus sp. JDR-2]
 gi|247542261|gb|ACS99279.1| Radical SAM domain protein [Paenibacillus sp. JDR-2]
          Length = 480

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 15/107 (14%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIE 75
            R  GC    G   D     C             C   +       G   +++Q+ + + 
Sbjct: 79  IR-YGCPYDCGLCPDHEQHSCLTLLEITERCNLQCPICYAESSPHAGSYRSLEQI-EFML 136

Query: 76  EQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETNG 120
           +  +  E E     ++GGEP +      ++  +  +    + V TNG
Sbjct: 137 DAIVRNEGEPDIVQISGGEPTIHPQFFEILDLVKSKPIKHVMVNTNG 183


>gi|148827317|ref|YP_001292070.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae
           PittGG]
 gi|260582394|ref|ZP_05850186.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus influenzae
           NT127]
 gi|148718559|gb|ABQ99686.1| pyruvate formate-lyase activating enzyme [Haemophilus influenzae
           PittGG]
 gi|260094545|gb|EEW78441.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus influenzae
           NT127]
          Length = 246

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G   +V+ L   +     
Sbjct: 21  IRFILFMQGC-----------LMRCKYCHNRDT----WDLEGGKEISVEDLMKEVVTYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                G     +GGE +LQ +      +A  + G    ++TNG
Sbjct: 66  FMNATGGGVTASGGEAVLQAEFVRDWFRACKEEGINTCLDTNG 108


>gi|16272144|ref|NP_438347.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae
           Rd KW20]
 gi|260580940|ref|ZP_05848764.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus influenzae
           RdAW]
 gi|1172447|sp|P43751|PFLA_HAEIN RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName:
           Full=Formate-C-acetyltransferase-activating enzyme 1;
           AltName: Full=PFL-activating enzyme 1
 gi|1573135|gb|AAC21848.1| pyruvate formate-lyase activating enzyme (act) [Haemophilus
           influenzae Rd KW20]
 gi|260092429|gb|EEW76368.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus influenzae
           RdAW]
          Length = 246

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G   +V+ L   +     
Sbjct: 21  IRFILFMQGC-----------LMRCKYCHNRDT----WDLEGGKEISVEDLMKEVVTYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                G     +GGE +LQ +      +A  + G    ++TNG
Sbjct: 66  FMNATGGGVTASGGEAVLQAEFVRDWFRACKEEGINTCLDTNG 108


>gi|317485566|ref|ZP_07944443.1| radical SAM superfamily protein [Bilophila wadsworthia 3_1_6]
 gi|316923246|gb|EFV44455.1| radical SAM superfamily protein [Bilophila wadsworthia 3_1_6]
          Length = 455

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 21/106 (19%)

Query: 31  GCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           GC    G   D              R + +C  C   +           +++++A  ++ 
Sbjct: 84  GCPFDCGLCPDHAQHTCTGLIEVTGRCNLRCPVC---YASAGEQVAPEPSLERIAFQMDR 140

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNG 120
                        L+GGEP ++ D+P +I+    RGF  I   TNG
Sbjct: 141 LRQASGAC--NVQLSGGEPTVRDDLPEIIRMAKARGFALIQCNTNG 184


>gi|312961553|ref|ZP_07776054.1| heme d1 biosynthesis protein [Pseudomonas fluorescens WH6]
 gi|311284232|gb|EFQ62812.1| heme d1 biosynthesis protein [Pseudomonas fluorescens WH6]
          Length = 393

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 6/100 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            +       R +  C+ C               +      +I++    G    R  +L+G
Sbjct: 29  PVVIWNLLRRCNLTCKHC--YATSADSVFRDELDTPAALQVIDDLHAAG---VRVLILSG 83

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           GEPLL+ D+  L     K  F +A+ +NGT+     I  I
Sbjct: 84  GEPLLREDLFELSAYARKLKFFVALSSNGTLINEANIQQI 123


>gi|149187338|ref|ZP_01865636.1| putative pyruvate formate-lyase 3 activating enzyme [Vibrio
           shilonii AK1]
 gi|148838874|gb|EDL55813.1| putative pyruvate formate-lyase 3 activating enzyme [Vibrio
           shilonii AK1]
          Length = 299

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 50  CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQAL 107
           C T  + + G    +     L D + +     ++       +GGEPL+Q D+   L + L
Sbjct: 91  CPTQALTVCGEDAQQ---KMLFDTLMKDKPFYDQSSGGVTFSGGEPLMQSDLVASLAKQL 147

Query: 108 NKRGFEIAVETNGTIEP 124
              G   AVET   +  
Sbjct: 148 QAEGVNTAVETCMHVPW 164


>gi|92084844|emb|CAF04130.1| pyruvate formate-lyase activating enzyme [Chlamydomonas
           reinhardtii]
          Length = 327

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 61/183 (33%), Gaps = 28/183 (15%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF    GC           + +C FC           G + +  ++A  I+      +  
Sbjct: 106 VFV--QGC-----------AMRCLFCSNPGTWTLK-GGNKTSSKEIAADIKRVRNYLKPR 151

Query: 85  GRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET--NGTIE-----PPQGIDWICVSP 135
           G    ++GGE +LQ      + Q ++  G    V+T   GT            D +    
Sbjct: 152 GG-ITISGGEAMLQPHFVSTVFQEVHALGLNTTVDTTGQGTKAGNWDVVLPHTDLVLFCI 210

Query: 136 KAGCDLKIKG--GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
           K    +K +   G + +      +   E  I F      + P     +++   L I +C 
Sbjct: 211 KHIDPIKYEALTGMKQRGASGFADQLAERKIPFYLRYVYI-PGYTDGVKDIDKL-IEWCK 268

Query: 194 QNP 196
           Q P
Sbjct: 269 QQP 271


>gi|76801421|ref|YP_326429.1| molybdopterin-based tungsten cofactor biosynthesis protein 2
           [Natronomonas pharaonis DSM 2160]
 gi|76557286|emb|CAI48862.1| molybdopterin-based tungsten cofactor biosynthesis protein 2
           [Natronomonas pharaonis DSM 2160]
          Length = 400

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGT-KGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            +      +R + +C  C   + G +   K G     +   L+++     +      + +
Sbjct: 38  PVVVWNTTNRCNLKCVHC---YAGAETEAKAGELTTTEGKRLLDDL---ADYGAPVVLFS 91

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEP+++ D+  L+      G    + TNGT+
Sbjct: 92  GGEPMVREDLTELVAYAADAGIRPVLSTNGTL 123


>gi|308273606|emb|CBX30208.1| hypothetical protein N47_D30170 [uncultured Desulfobacterium sp.]
          Length = 341

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118
           KG  Y  ++L +++ +     +        +GGEP         +++ L  RG   A++T
Sbjct: 124 KGRYYEPEELVEILLQDVRFFDHSKGGVTFSGGEPTQHCLYLGRVLRKLKDRGIHTALQT 183

Query: 119 NG 120
            G
Sbjct: 184 CG 185


>gi|299136219|ref|ZP_07029403.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298602343|gb|EFI58497.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 370

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 18/96 (18%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWIT--GEKEGRYCVLTG 92
            R +  C +C      DT +  +        + + + D+I +       +      VL G
Sbjct: 12  SRCNINCSYCYVYNQGDTSWQRM----PKHMSFEIVEDVIRQLATLYRDQDHPFAVVLHG 67

Query: 93  GEPLLQV---DVPLIQALNK---RGFEIAVETNGTI 122
           GEPLL        L++ L          +++TNGT+
Sbjct: 68  GEPLLLPRNILEALLKGLADCLPATCSRSIQTNGTL 103


>gi|171742683|ref|ZP_02918490.1| hypothetical protein BIFDEN_01797 [Bifidobacterium dentium ATCC
           27678]
 gi|306822547|ref|ZP_07455925.1| pyruvate formate-lyase activating enzyme [Bifidobacterium dentium
           ATCC 27679]
 gi|171278297|gb|EDT45958.1| hypothetical protein BIFDEN_01797 [Bifidobacterium dentium ATCC
           27678]
 gi|304554092|gb|EFM42001.1| pyruvate formate-lyase activating enzyme [Bifidobacterium dentium
           ATCC 27679]
          Length = 298

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 40/140 (28%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G    ++ +   I+   
Sbjct: 76  RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLEAMIKKIDRYA 118

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG------TIEPPQGI 128
              +  G     +GGE ++Q     +  +     + G    ++T+G      T E    I
Sbjct: 119 DLFKATGGGITFSGGESMMQP--AFVSRVFRASKEMGVHTCLDTSGFLNRNYTDEMIDDI 176

Query: 129 DWICVSPKAGCDLKIKGGQE 148
           D +C+       L +K G E
Sbjct: 177 D-LCL-------LDVKSGDE 188


>gi|326434948|gb|EGD80518.1| molybdenum cofactor synthesis 1 isoform 2 [Salpingoeca sp. ATCC
           50818]
          Length = 399

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 21/94 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +       K      D+L  L       G  + R   LT
Sbjct: 96  CNL-----------RCQYCMPEEGVQLSPKDELLTFDELVRLARIFASNGVSKIR---LT 141

Query: 92  GGEPLLQVDV-PLIQALNKRGFE----IAVETNG 120
           GGEPLL   +  LI+    RG      + + TNG
Sbjct: 142 GGEPLLYPQLSDLIREF--RGMPGIESVGITTNG 173


>gi|302543877|ref|ZP_07296219.1| putative Coenzyme PQQ synthesis protein [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461495|gb|EFL24588.1| putative Coenzyme PQQ synthesis protein [Streptomyces
           himastatinicus ATCC 53653]
          Length = 369

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 53  DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQA-LNK 109
               +  TK G Y      D + E+ I    E R     LTGGEP +  D+  I A   +
Sbjct: 41  AHCFVSATKRGDYMP---LDGVRERLIPQLAEARVNRVTLTGGEPFMHPDLLQITADFRE 97

Query: 110 RGFEIAVETNGTIEPPQGI 128
            G  + + TN T+   + I
Sbjct: 98  AGMGVGLCTNATMVTDEQI 116


>gi|108760287|ref|YP_632108.1| radical SAM domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108464167|gb|ABF89352.1| radical SAM domain protein [Myxococcus xanthus DK 1622]
          Length = 332

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 16/128 (12%)

Query: 29  FSGC------NLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           F GC       +  G       +  C  C   +  ++     R +  Q   + +E    G
Sbjct: 29  FEGCVPVPRSPIGCGWLVTAPCNLVCIHC---YGNVEDLPSKRLSTPQQLKVADEVIRAG 85

Query: 82  EKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140
                  +L+GGEPL++ D + +I  L   G    + TNGT    Q +    VS     +
Sbjct: 86  IMRQ---ILSGGEPLMRRDTLNVIDKLTDHGVATILGTNGTFLTQQMM--KTVSRCTRVE 140

Query: 141 LKIKGGQE 148
           + +    E
Sbjct: 141 ISLDSMDE 148


>gi|325122193|gb|ADY81716.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 384

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 58/174 (33%), Gaps = 20/174 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    D+   +          +   + ++    G  +  +  
Sbjct: 8   PLWLLAELTYRCPLQCPYCSNPLDYAQHK----NELTTQEWFGVFDQARQMGAVQLGF-- 61

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140
            +GGEPL+ Q    L+   +++GF   + T+G              G+D I VS +A   
Sbjct: 62  -SGGEPLVRQDLEQLVAHAHQQGFYTNLITSGMGLTEQRIADLKQAGLDHIQVSFQASDP 120

Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
           +        K  F Q          +D+    L  +      +     I  C +
Sbjct: 121 VVNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIEQIIELCLE 173


>gi|319954255|ref|YP_004165522.1| gtp cyclohydrolase subunit moaa [Cellulophaga algicola DSM 14237]
 gi|319422915|gb|ADV50024.1| GTP cyclohydrolase subunit MoaA [Cellulophaga algicola DSM 14237]
          Length = 327

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 16/98 (16%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           N       DR + +C +C     GI        + +D+L  L +     G  + R   +T
Sbjct: 11  NYLRLAVTDRCNLRCNYC-MPSEGIDFAENDKLFTIDELIRLSQILITQGITKIR---IT 66

Query: 92  GGEP-----LLQVDVPL--IQALNKRGFEIAVETNGTI 122
           GGEP     L+ +   L  I AL      I++ TN T+
Sbjct: 67  GGEPFVRKDLMVLLRELSKIDALED----ISITTNATV 100


>gi|300718350|ref|YP_003743153.1| Pyrroloquinoline quinone biosynthesis protein E [Erwinia billingiae
           Eb661]
 gi|299064186|emb|CAX61306.1| Pyrroloquinoline quinone biosynthesis protein E [Erwinia billingiae
           Eb661]
          Length = 366

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 42  RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           R   QC +C    DF   +         +Q  ++ ++    G  +  +   +GGEPL++ 
Sbjct: 8   RCPLQCPYCSNPLDFAQQEKE----LTTEQWIEVFKQARQMGAVQLGF---SGGEPLVRK 60

Query: 100 DVP-LIQALNKRGFEIAVETNGTIEPPQGID 129
           D+P LI+A    GF   + T+G     + ID
Sbjct: 61  DLPELIRAARDLGFYTNLITSGIGLTEKKID 91


>gi|296132655|ref|YP_003639902.1| Radical SAM domain protein [Thermincola sp. JR]
 gi|296031233|gb|ADG82001.1| Radical SAM domain protein [Thermincola potens JR]
          Length = 391

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C  C   +      K  G    ++    I++     E +    + 
Sbjct: 47  CNL-----------KCIHC---YAHADAKKFEGELTTEEAKKFIDDL---AEFKVPVLLF 89

Query: 91  TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           +GGEPL++ D   L +    +G    + TNGT+
Sbjct: 90  SGGEPLIRPDFFELAEYAASKGIRPTISTNGTL 122


>gi|260460192|ref|ZP_05808444.1| Radical SAM domain protein [Mesorhizobium opportunistum WSM2075]
 gi|259033837|gb|EEW35096.1| Radical SAM domain protein [Mesorhizobium opportunistum WSM2075]
          Length = 382

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 27/114 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE------- 84
           CNL            C +C   ++   G +  R    Q++D + +       +       
Sbjct: 22  CNL-----------DCSYC---YIYHMGDEAWRSQPKQMSDAVIQMVAQRLSDQLALQAV 67

Query: 85  GRYCVLTGGEPLL---QVDVPLIQALNK---RGFEIAVETNGTIEPPQGIDWIC 132
               VL GGEPLL            L         I ++TNG +   + ID + 
Sbjct: 68  PFSVVLHGGEPLLLGATRLEHFCATLRGVLPHPCGIHIQTNGALISDRIIDVLV 121


>gi|229132987|ref|ZP_04261829.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           BDRD-ST196]
 gi|228650484|gb|EEL06477.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           BDRD-ST196]
          Length = 337

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  +Q         D++  L       G  + R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPD--YAFLQEEF--LLTFDEIERLARLFISMGVNKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQAL-NKRGFE-IAVETNG 120
           GEPLL+ D+P LI  L    G + I + TNG
Sbjct: 75  GEPLLRKDLPKLIARLTKLEGLKDIGLTTNG 105


>gi|225405366|ref|ZP_03760555.1| hypothetical protein CLOSTASPAR_04586 [Clostridium asparagiforme
           DSM 15981]
 gi|225043125|gb|EEG53371.1| hypothetical protein CLOSTASPAR_04586 [Clostridium asparagiforme
           DSM 15981]
          Length = 317

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           G    V +L  L+EE     E  G    LTGGE   Q +    L+ A  + G   A+ET 
Sbjct: 115 GEMKTVSELLKLVEEDAAFYELSGGGVTLTGGECTSQPEACKNLLMACRQEGIHTAIETC 174

Query: 120 G 120
           G
Sbjct: 175 G 175


>gi|14591469|ref|NP_143549.1| tRNA-modifying enzyme [Pyrococcus horikoshii OT3]
 gi|159795643|pdb|2YX0|A Chain A, Crystal Structure Of P. Horikoshii Tyw1
 gi|3258136|dbj|BAA30819.1| 342aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 342

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
           GEP+L   +  L++  +KRGF   + TNGTI 
Sbjct: 151 GEPMLYPYMGDLVEEFHKRGFTTFIVTNGTIP 182


>gi|163939949|ref|YP_001644833.1| molybdenum cofactor biosynthesis protein A [Bacillus
           weihenstephanensis KBAB4]
 gi|163862146|gb|ABY43205.1| molybdenum cofactor biosynthesis protein A [Bacillus
           weihenstephanensis KBAB4]
          Length = 337

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  +Q         D++  L       G  + R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPD--YAFLQEEF--LLTFDEIERLARLFISMGVNKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQAL-NKRGFE-IAVETNG 120
           GEPLL+ D+P LI  L    G + I + TNG
Sbjct: 75  GEPLLRKDLPKLIARLTKLEGLKDIGLTTNG 105


>gi|23014017|ref|ZP_00053858.1| COG2896: Molybdenum cofactor biosynthesis enzyme [Magnetospirillum
           magnetotacticum MS-1]
          Length = 324

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F      +     +++L  L E     G ++ R   LTGGEPL+
Sbjct: 18  DRCDLRCVYCMAEDVTF----KPRAELLTLEELGRLCEAFVRKGVRKIR---LTGGEPLV 70

Query: 98  QVDV-PLIQ---ALNKRGF--EIAVETNGT 121
           + ++  LI    AL   G   E+ + TNGT
Sbjct: 71  RRNIMSLIDRLGALVADGRLDEVTLTTNGT 100


>gi|261417420|ref|YP_003251103.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373876|gb|ACX76621.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327495|gb|ADL26696.1| radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 390

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 38/112 (33%), Gaps = 27/112 (24%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       R  A        +      + G   +DQLAD                + +
Sbjct: 47  CNLKCVHCYARSEAI------KYQNELSHEEGIKLIDQLAD----------FHVPVILFS 90

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
           GGEPLL+ D   L      +G    + TNGT          C++P     LK
Sbjct: 91  GGEPLLRPDFFELANYAASKGIRPTISTNGT----------CITPDVAQKLK 132


>gi|18312504|ref|NP_559171.1| hypothetical protein PAE1252 [Pyrobaculum aerophilum str. IM2]
 gi|18159966|gb|AAL63353.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 356

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 12/100 (12%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           LW        + +CR+C   F         R +  ++A  I +               GG
Sbjct: 2   LWFLLTTGACNLKCRYCGGSFNPAHSPWRPRASAREVAGFISKI-----DASPVVFFYGG 56

Query: 94  EPLLQVD--VPLIQALNKRGFEIAVETNGTIE---PPQGI 128
           EPL+     + +++AL    F I   TNGT+    PP+  
Sbjct: 57  EPLVNPSYVLEVMEALGGAKFGIQ--TNGTLVKRLPPEAW 94


>gi|307354665|ref|YP_003895716.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
           DSM 11571]
 gi|307157898|gb|ADN37278.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 450

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 22/127 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C    +    T   R +V++    I+   +  +         
Sbjct: 95  CNL-----------SCPYCYQKELRTGDTSMDRTSVEKTIRFIKNTTLENKSSSLLVKFF 143

Query: 92  GGEPL------LQVDVPLIQALNKRGFEI--AVETNGTIEPPQGIDWICVSPKAG-CDLK 142
           GGEPL      +Q+   L +       +    + TNGT+   +  D   +SP    C + 
Sbjct: 144 GGEPLTEPEICIQISKELREWAKAHNIKYIGTLTTNGTLLSGENFDR--LSPYISACHIT 201

Query: 143 IKGGQEL 149
           + G +E+
Sbjct: 202 LDGPREI 208


>gi|297197550|ref|ZP_06914947.1| formate acetyltransferase [Streptomyces sviceus ATCC 29083]
 gi|297146770|gb|EFH28330.1| formate acetyltransferase [Streptomyces sviceus ATCC 29083]
          Length = 1138

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 30/137 (21%)

Query: 26   FCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
            F   SGC L           +C +C   DT  +      G   +VD++   IE+      
Sbjct: 921  FV--SGCPL-----------RCLYCANPDTWHMR----DGKETSVDEVMREIEKYRAFVT 963

Query: 83   KEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWICVS 134
              G    +TGGEPLLQ      +++     G   A++T+G      + E   G D + + 
Sbjct: 964  TAGGGVTVTGGEPLLQPAFTGEILRRCKDTGLHTALDTSGFLGARASDELLSGTDLVLLD 1023

Query: 135  PKAGCDLKIKG--GQEL 149
             K+      +   G EL
Sbjct: 1024 IKSFDSAAYRRLTGGEL 1040


>gi|51892757|ref|YP_075448.1| heme biosynthesis protein [Symbiobacterium thermophilum IAM 14863]
 gi|51856446|dbj|BAD40604.1| heme biosynthesis protein [Symbiobacterium thermophilum IAM 14863]
          Length = 355

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR C T  V      G   + DQ+  +IE+            V T
Sbjct: 24  CNLT-----------CRHCRT--VTCPAPTGKDLSTDQVVRVIEDIASVARPTF---VFT 67

Query: 92  GGEPLLQVDVPLIQALNK--RGFEIAVETNGTI 122
           GGEPL + D+    A +    G  + +ETN T+
Sbjct: 68  GGEPLKRPDL-FTIAAHASRHGAVVVLETNATM 99


>gi|331268523|ref|YP_004395015.1| glycerol dehydratase activator [Clostridium botulinum BKT015925]
 gi|329125073|gb|AEB75018.1| glycerol dehydratase activator [Clostridium botulinum BKT015925]
          Length = 313

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           G    V ++ + +++  I   K G    L+GGE LLQ +  + L++     G+  A+ET
Sbjct: 115 GKSVTVGEVVEKLKKDSIYYRKSGGGVTLSGGEALLQPEFAIELLKQCKSLGWHTAIET 173


>gi|328555376|gb|AEB25868.1| molybdenum cofactor biosynthesis protein A [Bacillus
           amyloliquefaciens TA208]
 gi|328913747|gb|AEB65343.1| molybdenum cofactor biosynthesis protein A [Bacillus
           amyloliquefaciens LL3]
          Length = 341

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 24/112 (21%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  F+     K    + ++L  L +     G        LTG
Sbjct: 25  DRCNFRCTYCMPAELFGPDYPFLQ----KTELLSFEELERLAK--LFVGRFGVEKIRLTG 78

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPP-------QGIDWICVS 134
           GEPL++ D+P LI+ L +  G + IA+ TNG++ P         G+  + VS
Sbjct: 79  GEPLMRKDMPELIRKLARIPGLKDIAMTTNGSLLPVYAEKLKQAGLHRVTVS 130


>gi|308175399|ref|YP_003922104.1| molybdenum cofactor biosynthesis protein A [Bacillus
           amyloliquefaciens DSM 7]
 gi|307608263|emb|CBI44634.1| molybdenum cofactor biosynthesis protein A [Bacillus
           amyloliquefaciens DSM 7]
          Length = 344

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 24/112 (21%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  F+     K    + ++L  L +     G        LTG
Sbjct: 25  DRCNFRCTYCMPAELFGPDYPFLQ----KTELLSFEELERLAK--LFVGRFGVEKIRLTG 78

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPP-------QGIDWICVS 134
           GEPL++ D+P LI+ L +  G + IA+ TNG++ P         G+  + VS
Sbjct: 79  GEPLMRKDMPELIRKLARIPGLKDIAMTTNGSLLPVYAEKLKQAGLHRVTVS 130


>gi|253990313|ref|YP_003041669.1| pyruvate formate lyase-activating enzyme 1 [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253781763|emb|CAQ84926.1| pyruvate formate lyase activating enzyme 1 [Photorhabdus
           asymbiotica]
          Length = 246

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 57/181 (31%), Gaps = 38/181 (20%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G    V++L           
Sbjct: 25  VF--FQGC-----------LMRCLYCHNRDT----WDTHGGKDVTVEELIKEATTYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKA 137
              G     +GGE +LQ +      +A    G    ++TNG        ID  + V+   
Sbjct: 68  NASGGGVTASGGEAILQAEFVRDWFRACRAEGIHTCLDTNGFVRRYDPVIDELMDVTDLV 127

Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197
             DLK     E+     Q  V   N+   +F R+          + N    I Y    P 
Sbjct: 128 MLDLKQIN-DEI----HQKLVGVSNHRTLEFARY--------LTKRNQKTWIRYVVV-PG 173

Query: 198 W 198
           W
Sbjct: 174 W 174


>gi|188997227|ref|YP_001931478.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932294|gb|ACD66924.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 208

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 23/100 (23%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            +GCN            +C  C    V +     G   ++++ + IE+            
Sbjct: 26  LAGCNF-----------RCLHCYNWRVVLD--IAGNIPIERVLEEIEKSPFLEC-----I 67

Query: 89  VLTGGEPLLQVDVPLIQALN-----KRGFEIAVETNGTIE 123
           V++GGEP +     LI+ +N         +I ++TNG+  
Sbjct: 68  VISGGEPTIHEPEELIELVNTIKKVNPELKIRIDTNGSNP 107


>gi|319775951|ref|YP_004138439.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae
           F3047]
 gi|329123815|ref|ZP_08252373.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus aegyptius
           ATCC 11116]
 gi|317450542|emb|CBY86759.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae
           F3047]
 gi|327469302|gb|EGF14773.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus aegyptius
           ATCC 11116]
          Length = 246

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G   +V++L   +     
Sbjct: 21  IRFILFMQGC-----------LMRCKYCHNRDT----WDLEGGREISVEELMKEVVSYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                G     +GGE +LQ +      +A    G    ++TNG
Sbjct: 66  FMNATGGGVTASGGEAVLQAEFVRDWFRACKVEGINTCLDTNG 108


>gi|319762847|ref|YP_004126784.1| radical sam domain protein [Alicycliphilus denitrificans BC]
 gi|330824926|ref|YP_004388229.1| Radical SAM domain-containing protein [Alicycliphilus denitrificans
           K601]
 gi|317117408|gb|ADU99896.1| Radical SAM domain protein [Alicycliphilus denitrificans BC]
 gi|329310298|gb|AEB84713.1| Radical SAM domain protein [Alicycliphilus denitrificans K601]
          Length = 406

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 16/112 (14%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            +       R +  C+ C   +         G  ++ ++  ++++    G       +L+
Sbjct: 31  PVVIWNLIRRCNLTCKHC---YALSADHDYAGELSLSEVFTVMDDLKAFGVPA---LILS 84

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGT-IEPP-------QGIDWICVS 134
           GGEPLL+ D+  +     + GF   + TNGT I+ P        G D++ +S
Sbjct: 85  GGEPLLRADIFEISARARQMGFYTGLSTNGTLIDAPMARRIADAGFDYVGIS 136


>gi|288927620|ref|ZP_06421467.1| pyruvate formate-lyase 1-activating enzyme [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288330454|gb|EFC69038.1| pyruvate formate-lyase 1-activating enzyme [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 247

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 26/116 (22%)

Query: 8   EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
           E F ++ G G        +F   SGC             +CR+C               +
Sbjct: 11  ESFGSVDGPGIRFI----IF--LSGC-----------KMRCRYC----HNPDTWAMKSAD 49

Query: 67  VDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           +    +L+++        G+     ++GGE LLQ+D  + L +     G    ++T
Sbjct: 50  MRSADELLQQALRFRPYWGKEGGITVSGGEALLQIDFMLELFEKAKALGINTCLDT 105


>gi|283456246|ref|YP_003360810.1| pyruvate formate-lyase activating enzyme [Bifidobacterium dentium
           Bd1]
 gi|309801459|ref|ZP_07695586.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium dentium
           JCVIHMP022]
 gi|283102880|gb|ADB09986.1| pflA1 Pyruvate formate-lyase activating enzyme [Bifidobacterium
           dentium Bd1]
 gi|308221974|gb|EFO78259.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium dentium
           JCVIHMP022]
          Length = 293

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 40/140 (28%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G    ++ +   I+   
Sbjct: 71  RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLEAMIKKIDRYA 113

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG------TIEPPQGI 128
              +  G     +GGE ++Q     +  +     + G    ++T+G      T E    I
Sbjct: 114 DLFKATGGGITFSGGESMMQP--AFVSRVFRASKEMGVHTCLDTSGFLNRNYTDEMIDDI 171

Query: 129 DWICVSPKAGCDLKIKGGQE 148
           D +C+       L +K G E
Sbjct: 172 D-LCL-------LDVKSGDE 183


>gi|268323119|emb|CBH36707.1| conserved hypothetical protein, radical SAM superfamily [uncultured
           archaeon]
 gi|268326059|emb|CBH39647.1| conserved hypothetical protein, radical SAM superfamily [uncultured
           archaeon]
          Length = 364

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 11/90 (12%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           +W+  +  R + +C+ C      I          ++   LIE+    G  +  +   TGG
Sbjct: 39  VWAVTK--RCNLRCKHC-----SISEEDHEELTTEEGFTLIEDAAKLGHVKFAF---TGG 88

Query: 94  EPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           EP+L+ D+  LI+  +    ++ + TNGT+
Sbjct: 89  EPMLRDDIYDLIEYASSFDMQVVMATNGTL 118


>gi|288930557|ref|YP_003434617.1| radical SAM protein [Ferroglobus placidus DSM 10642]
 gi|288892805|gb|ADC64342.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642]
          Length = 224

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 14/87 (16%)

Query: 35  WSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
               E    + +C +C          +    +VD++A  +               + G E
Sbjct: 8   NCRVEAAYCNLRCPYC-----THLEMESHELSVDEIASKL--------NGCEAVYIGGAE 54

Query: 95  PLLQVDV-PLIQALNKRGFEIAVETNG 120
           P +  D+  L++ L ++G ++ ++T+G
Sbjct: 55  PTIHRDLKDLVEKLAEKGVKVTLKTSG 81


>gi|167043225|gb|ABZ07933.1| hypothetical protein ALOHA_HF4000ANIW141K23ctg1g43 [uncultured
           marine microorganism HF4000_ANIW141K23]
          Length = 419

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 10/96 (10%)

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNGTIE 123
             DQ+  +++         G    +TGGEP+L+ D+  LI+ + +     I + TNG   
Sbjct: 7   TQDQVRAMMKTLRAERPIPGNSMQITGGEPMLREDITDLIKIMKEEHVDHIQMNTNGIRH 66

Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
                    + P+AG D+++ G   L L F  V   
Sbjct: 67  A--------LDPEAGRDVRMAGCNNLYLSFDGVTAR 94


>gi|52550188|gb|AAU84037.1| heme d1 biosynthesis protein [uncultured archaeon GZfos35D7]
          Length = 348

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 18/95 (18%)

Query: 29  FSG-CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
            +G CNL            CR         +       +  +   LI+E     +     
Sbjct: 13  LTGACNLKC--------KHCRG-----SSTETPDPDELSTAEAFRLIDE---IVDFASPI 56

Query: 88  CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
            +L+GGEPL++ DV  + +    +G  + + TNGT
Sbjct: 57  LILSGGEPLMRGDVYEIARYGVDKGLRVVLATNGT 91


>gi|320108450|ref|YP_004184040.1| molybdenum cofactor biosynthesis protein A [Terriglobus saanensis
           SP1PR4]
 gi|319926971|gb|ADV84046.1| molybdenum cofactor biosynthesis protein A [Terriglobus saanensis
           SP1PR4]
          Length = 351

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 21/109 (19%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99
           DR + +C +C     G         ++     +IE     G ++ R   LTGGEPLL+  
Sbjct: 40  DRCNYRCVYC---REGEDNVHFDELSIQDYLRMIEVFVSLGIEKIR---LTGGEPLLRAG 93

Query: 100 DVPLIQALN-------KRGFEIAVETNGTIEPPQGIDW-------ICVS 134
            V +++ L            +IA+ TNG +     +D        I VS
Sbjct: 94  LVKMVRELAAMRPVFTDEPLDIALTTNGHLLAGMAVDLKAAGLSRITVS 142


>gi|224417944|ref|ZP_03655950.1| radical SAM family protein [Helicobacter canadensis MIT 98-5491]
 gi|253827282|ref|ZP_04870167.1| putative oxidoreductase [Helicobacter canadensis MIT 98-5491]
 gi|313141485|ref|ZP_07803678.1| pyruvate formate-lyase activating enzyme [Helicobacter canadensis
           MIT 98-5491]
 gi|253510688|gb|EES89347.1| putative oxidoreductase [Helicobacter canadensis MIT 98-5491]
 gi|313130516|gb|EFR48133.1| pyruvate formate-lyase activating enzyme [Helicobacter canadensis
           MIT 98-5491]
          Length = 364

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDVPL- 103
           +C FC  D++G +     + + +    ++ E    G K     +  G GEP+L  D+ L 
Sbjct: 51  RCTFCGVDYMGYKNI---KIDFEIYKQIVREMGDLGVKS---VMFAGEGEPMLHRDLDLM 104

Query: 104 IQALNKRGFEIAVETN 119
           I+A  K G ++A+ TN
Sbjct: 105 IEATKKAGIDVAITTN 120


>gi|205372586|ref|ZP_03225397.1| hypothetical protein Bcoam_03785 [Bacillus coahuilensis m4-4]
          Length = 375

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99
           +C  C   +            ++ L   ++E      ++ R   +TGGEP+L      Q 
Sbjct: 45  RCEHCAVGYTLTPKDPNA-LPIELLLSRLDEI-----QDLRSLSITGGEPMLSKKSVEQY 98

Query: 100 DVPLIQALNKRGFEIAVETNGTIEP 124
            +PL+Q  + RG    + +N T++P
Sbjct: 99  VLPLLQYSHSRGVRTQINSNLTLDP 123


>gi|194290177|ref|YP_002006084.1| molybdenum cofactor biosynthesis protein a [Cupriavidus taiwanensis
           LMG 19424]
 gi|193224012|emb|CAQ70021.1| MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A [Cupriavidus taiwanensis
           LMG 19424]
          Length = 389

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 18/85 (21%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +  +     + +++          G ++ R   LTGGE
Sbjct: 66  DRCNFRCVYCMPKEVFDKDYTFLPHS--ELLSFEEIERTARLFVAHGVEKIR---LTGGE 120

Query: 95  PLLQVDVP-LIQALNKRGFEIAVET 118
           PLL+ ++  L++ L K      +ET
Sbjct: 121 PLLRKNIEHLVEMLAK------IET 139


>gi|147677309|ref|YP_001211524.1| Fe-S oxidoreductases [Pelotomaculum thermopropionicum SI]
 gi|146273406|dbj|BAF59155.1| predicted Fe-S oxidoreductases [Pelotomaculum thermopropionicum SI]
          Length = 392

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C  C   +   +  K  G     +    I+      E +    + 
Sbjct: 47  CNL-----------RCIHC---YSSSESRKYDGELTTAEARRFID---GLAEFKVPVLLF 89

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           +GGEPLL+ D+  L     +RG    + TNGT+
Sbjct: 90  SGGEPLLRDDLFELAAYAGERGIRPTISTNGTL 122


>gi|113868543|ref|YP_727032.1| molybdenum cofactor biosynthesis protein A [Ralstonia eutropha H16]
 gi|113527319|emb|CAJ93664.1| molybdopterin biosynthesis protein [Ralstonia eutropha H16]
          Length = 374

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 18/85 (21%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +  +     + +++          G ++ R   LTGGE
Sbjct: 51  DRCNFRCVYCMPKEVFDKDYTFLPHS--ELLSFEEIERTARLFVAHGVEKIR---LTGGE 105

Query: 95  PLLQVDVP-LIQALNKRGFEIAVET 118
           PLL+ ++  L++ L K      +ET
Sbjct: 106 PLLRKNIEHLVEMLAK------IET 124


>gi|41614809|ref|NP_963307.1| hypothetical protein NEQ013 [Nanoarchaeum equitans Kin4-M]
 gi|40068533|gb|AAR38868.1| NEQ013 [Nanoarchaeum equitans Kin4-M]
          Length = 346

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 45  AQCRFCDTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-V 101
           ++C FC+   +  +         + ++  D + +      K   +  LTGGEPLL+   +
Sbjct: 41  SRCTFCNIWKIYKENPNLLKKELSKEEWIDFLSK----NNKYLAWVSLTGGEPLLKDGAI 96

Query: 102 PLIQALNKRGFEIAVETN 119
            +I  L   G  + + TN
Sbjct: 97  DIINYLLNNGKNVEITTN 114


>gi|20094781|ref|NP_614628.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
 gi|19887984|gb|AAM02558.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
          Length = 285

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 13/114 (11%)

Query: 51  DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110
           D     ++GT+   +   ++ + I  + +    +  + +LTGGEP L      +  L +R
Sbjct: 16  DCPHCNLRGTRRAGHLDPEVLERILAE-VADRYDLDFVILTGGEPCLHPRFGELVELCRR 74

Query: 111 -----GFEIAVETNGTIEPPQGID--WICVSP--KAGCDLKIKGGQELKLVFPQ 155
                G  +A E          +D  ++ + P    G +  ++  +E+  + P 
Sbjct: 75  YDAGVGVNVATE---VHPALADVDHVYVALEPHRGYGLEGALRTWEEVARLEPD 125


>gi|320094912|ref|ZP_08026644.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319978156|gb|EFW09767.1| anaerobic ribonucleoside-triphosphate reductase small subunit
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 234

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 26/125 (20%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
             ++F    GC              C +C             R       D +E      
Sbjct: 22  VASLF--LQGCP-----------WACPYC-----QNAAIIDPRVPGVVAWDAVERLLARR 63

Query: 82  EKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICV 133
                  V +GGE   Q    P ++ + + GF + + T G      G       +DW+ +
Sbjct: 64  RGLLDGVVFSGGEATRQIALAPAMRRVRELGFAVGLHTAGPYPARLGALLDEGLVDWVGL 123

Query: 134 SPKAG 138
             KA 
Sbjct: 124 DIKAT 128


>gi|220903568|ref|YP_002478880.1| Radical SAM domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867867|gb|ACL48202.1| Radical SAM domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 414

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 13/108 (12%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           G  A       C L +       +  C+ C            G  +  +   LI+     
Sbjct: 54  GSPA-------CRLIAWEVTRSCNLACKHC--RAEAHPEPYPGELSTAEAKALIDTFTEV 104

Query: 81  GEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127
           G+      + TGG+P+++ DV  L+   + +G   A   NGT+  P+ 
Sbjct: 105 GK---PIIIFTGGDPMIRPDVYELVAYAHSKGLPCAFSPNGTLITPET 149


>gi|150400184|ref|YP_001323951.1| molybdenum cofactor biosynthesis protein A [Methanococcus vannielii
           SB]
 gi|189028689|sp|A6US67|MOAA_METVS RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|150012887|gb|ABR55339.1| putative molybdenum cofactor biosynthesis protein A [Methanococcus
           vannielii SB]
          Length = 297

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 37/177 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C     G     G   + D++  ++       E   R   ++
Sbjct: 20  CNL-----------KCFYC--HREGRTEENGKLMSPDEIGKIVSASL---EFGVRKIKIS 63

Query: 92  GGEPLLQVDVP-LIQALN-KRGFEIAVETNGTIEPPQGIDW-------ICVS-----PKA 137
           GGEPL++ D+P +IQ +   +  +I++ TNG +      D        + VS     PK 
Sbjct: 64  GGEPLVRKDLPKIIQNIKNDQIKDISLTTNGILLEKCAEDLKKAGLNRVNVSLDTLNPKK 123

Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
             +  I GG   K+   +  +    ++G    + +   MD    +   +  + YC +
Sbjct: 124 YKE--ITGGDVEKV---KRGIEKAIFLGLTPLKVNFLAMDITLND--LSEVMDYCKK 173


>gi|114571255|ref|YP_757935.1| GTP cyclohydrolase subunit MoaA [Maricaulis maris MCS10]
 gi|114341717|gb|ABI66997.1| GTP cyclohydrolase subunit MoaA [Maricaulis maris MCS10]
          Length = 339

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 10/90 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          K    ++++L  + +     G  + R   LTGGEPL++ D
Sbjct: 30  DRCDLRCVYC-MKAKPTFLPKKDLLSLEELTAVCDTFIARGVTKVR---LTGGEPLVRKD 85

Query: 101 -VPLIQALNKR----GF-EIAVETNGTIEP 124
            + LI+ L  R    G  E+ + TNGT  P
Sbjct: 86  ILSLIENLGARIGKSGLEEVCLTTNGTQLP 115


>gi|57641606|ref|YP_184084.1| tRNA-modifying enzyme [Thermococcus kodakarensis KOD1]
 gi|57159930|dbj|BAD85860.1| hypothetical protein, conserved, radical SAM superfamily
           [Thermococcus kodakarensis KOD1]
          Length = 333

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
           GEP+L   +  L++  +KRGF   + TNGT+ 
Sbjct: 142 GEPMLYPYMGDLVEEFHKRGFTTFIVTNGTLP 173


>gi|332178902|gb|AEE14591.1| molybdenum cofactor biosynthesis protein A [Thermodesulfobium
           narugense DSM 14796]
          Length = 324

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 7/85 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C     G+         + +++  +I+     G K+ R   LTGGEPL++ 
Sbjct: 18  DRCNYRCVYC-MPEEGVNFIPHKEILSFEEIVRIIKILKELGIKKIR---LTGGEPLVRK 73

Query: 100 DV-PLIQALNKRGF-EIAVETNGTI 122
           ++  L+  + K G  ++++ TNG++
Sbjct: 74  NIVELVGKITKIGLDDVSLTTNGSL 98


>gi|324327466|gb|ADY22726.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 338

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +CR+C        D  +  +  +     + D++  +       G ++ R   +TG
Sbjct: 22  DRCNFRCRYCMPEEIFGPD--YSFL--SNDKILSFDEIERITRIFVSLGVRKLR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEPLL+  +P  I+ LNK  G E I + TNG++      D        + VS
Sbjct: 75  GEPLLRRGLPQFIERLNKIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVS 126


>gi|302343941|ref|YP_003808470.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075]
 gi|301640554|gb|ADK85876.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075]
          Length = 337

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 18/91 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C   +     T G   + D +A L  ++        +    +
Sbjct: 16  CNL-----------RCVYC---YAAASAT-GADMDPD-IAALALDRLGPPPGRRQTVEFS 59

Query: 92  GGEPLL--QVDVPLIQALNKRGFEIAVETNG 120
           GGEPLL  ++   L+          A++TNG
Sbjct: 60  GGEPLLRFELLKELVLTRASAQRRFALQTNG 90


>gi|291532427|emb|CBL05540.1| Radical SAM superfamily [Megamonas hypermegale ART12/1]
          Length = 130

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 49  FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL 107
           FCD  +           N  +   L+E+    G    +  + +GGEPL++ D+  L++  
Sbjct: 14  FCDHCYRDAGCKADEELNTQEAKTLLEQIAKAG---FKIMIFSGGEPLMRPDIVELVEYA 70

Query: 108 NKRGFEIAVETNGTI 122
            K G      TNGT+
Sbjct: 71  TKLGLRSVFGTNGTL 85


>gi|282866080|ref|ZP_06275128.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Streptomyces sp. ACTE]
 gi|282559119|gb|EFB64673.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Streptomyces sp. ACTE]
          Length = 339

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 38  CNLAC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  +++ L  +   + + TN  +   + ++    SP     + I G +E
Sbjct: 80  GGEPLMHPQIDEIVRQLVAKKKYVFLCTN-AMLMRKKLEKFTPSPYFAFAVHIDGLRE 136


>gi|157364004|ref|YP_001470771.1| glycyl-radical activating family protein [Thermotoga lettingae TMO]
 gi|157314608|gb|ABV33707.1| glycyl-radical enzyme activating protein family [Thermotoga
           lettingae TMO]
          Length = 298

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 6/94 (6%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119
           G + + + +   +E+     ++ G     +GGEPL Q+D  L  +  L +R   +A++T+
Sbjct: 102 GTQISCEDILKELEKDTTYFDQSGGGVTFSGGEPLSQIDFLLEILPELKRRAVHVAIDTS 161

Query: 120 GTIEPPQGIDWICVSPKAGCDL-KIKGGQELKLV 152
           G     +  D   V P     L  +K   E K +
Sbjct: 162 G---YAKTEDLKKVLPYVDLFLYDLKVIDEKKHI 192


>gi|311067283|ref|YP_003972206.1| putative Fe-S oxidoreductase, radical SAM superfamily protein
           [Bacillus atrophaeus 1942]
 gi|310867800|gb|ADP31275.1| putative Fe-S oxidoreductase, radical SAM superfamily protein
           [Bacillus atrophaeus 1942]
          Length = 372

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 13/92 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   +EE  +      R   +TGGEP+L +      
Sbjct: 44  RCEHCAVGYT-LQPKDPNALPIDLLLQRLEEIPLL-----RSISITGGEPMLSLKSVKEY 97

Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
            VPL++  ++RG    + +N T++  +  +WI
Sbjct: 98  VVPLLKYAHERGVRTQINSNLTLDI-ERYEWI 128


>gi|289550128|ref|YP_003471032.1| Molybdenum cofactor biosynthesis protein A [Staphylococcus
           lugdunensis HKU09-01]
 gi|315659242|ref|ZP_07912106.1| molybdenum cofactor biosynthesis protein A [Staphylococcus
           lugdunensis M23590]
 gi|289179660|gb|ADC86905.1| Molybdenum cofactor biosynthesis protein A [Staphylococcus
           lugdunensis HKU09-01]
 gi|315495667|gb|EFU83998.1| molybdenum cofactor biosynthesis protein A [Staphylococcus
           lugdunensis M23590]
          Length = 340

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 16/89 (17%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D DFV +   K      +++  + E     G K+ R   +TGG
Sbjct: 22  DRCNFRCDYCMPKEIFGD-DFVFL--PKDELLTFEEIERIAEIYAELGVKKLR---ITGG 75

Query: 94  EPLLQVDV-PLIQALNK-RGFE-IAVETN 119
           EPLL+ ++  LI  LNK  G E I + TN
Sbjct: 76  EPLLRRNLYQLIARLNKIEGIEDIGLTTN 104


>gi|285017403|ref|YP_003375114.1| molybdenum cofactor biosynthesis protein a [Xanthomonas albilineans
           GPE PC73]
 gi|283472621|emb|CBA15126.1| probable molybdenum cofactor biosynthesis protein a [Xanthomonas
           albilineans]
          Length = 344

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 20/137 (14%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
           +C +C   D           GR +  Q+  L       G ++ R   LTGGEPLL+ ++P
Sbjct: 36  RCGYCMPADKVPDDYGFDAAGRLSFAQIETLARAFVRNGVRKLR---LTGGEPLLRRELP 92

Query: 103 -LIQALNK-RGFE-IAVETNGTIEPP-------QGIDWICVSPKAGCDLKIK----GGQE 148
            L++ L +  G E +A+ TNG +           G+  + VS  A   L  +    G  E
Sbjct: 93  ELVRRLARIAGVEDLAMTTNGVLLATHAQALRDAGLQRVTVSLDAIDPLLFRQLSGGRGE 152

Query: 149 LKLVFPQVNVSPENYIG 165
           +  V   ++ +    +G
Sbjct: 153 IAQVLAGIDAAVAAGLG 169


>gi|271968669|ref|YP_003342865.1| Fe-S oxidoreductase-like protein [Streptosporangium roseum DSM
           43021]
 gi|270511844|gb|ACZ90122.1| Fe-S oxidoreductase-like protein [Streptosporangium roseum DSM
           43021]
          Length = 360

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-P 102
             +C  C   +         + +  Q+    +              + GGEPLL   V  
Sbjct: 19  PLRCSHC---YSESGRRPARQLDHGQMLRAADAVIAMKPYG---VCIAGGEPLLVKGVFE 72

Query: 103 LIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
           +I  L+  G E+++ T G    P+ ID I 
Sbjct: 73  VIDRLSAAGMEVSLFTGGWSLRPEMIDDIV 102


>gi|224824372|ref|ZP_03697480.1| molybdenum cofactor biosynthesis protein A [Lutiella nitroferrum
           2002]
 gi|224603791|gb|EEG09966.1| molybdenum cofactor biosynthesis protein A [Lutiella nitroferrum
           2002]
          Length = 324

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR   +C +C          +   +   D++  ++      G +  R   LTGGEPLL+ 
Sbjct: 19  DRCDLRCTYC-IPKGFKDFEEPENWLTFDEIERVVAAFVRLGTRRVR---LTGGEPLLRR 74

Query: 100 DVP 102
           ++P
Sbjct: 75  NLP 77


>gi|317471208|ref|ZP_07930576.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901314|gb|EFV23260.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA]
          Length = 362

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 15/102 (14%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       R S  C          +G   G  +  Q  D+ ++    G     + +L 
Sbjct: 69  CNLHCKGCYARASGACA---------EGQPEGELSGAQWNDIFDQAEKLG---ISFILLA 116

Query: 92  GGEPLLQVDVPLIQALNKRG-FEIAVETNGTIEPPQGIDWIC 132
           GGEPL++ DV      +K+  F +   TNGT+     +    
Sbjct: 117 GGEPLMRRDVIESAGRHKKVIFPVF--TNGTLMQEGCLTLFS 156


>gi|294636757|ref|ZP_06715096.1| pyruvate formate-lyase 2-activating enzyme [Edwardsiella tarda ATCC
           23685]
 gi|291090016|gb|EFE22577.1| pyruvate formate-lyase 2-activating enzyme [Edwardsiella tarda ATCC
           23685]
          Length = 226

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119
           G    +D+L   + +  I     G    L+GGE L+Q       ++ L + G   AVET 
Sbjct: 29  GRDITLDELEREVLKDDIFFRVSGGGVTLSGGEVLMQAAFAGQFLRRLQRLGIHCAVETA 88

Query: 120 G 120
           G
Sbjct: 89  G 89


>gi|228922276|ref|ZP_04085583.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228837331|gb|EEM82665.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 307

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 13/85 (15%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+  +P LI+ L+K  G E I +
Sbjct: 14  SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPKLIERLHKIDGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVS 134
            TNG++      D        + VS
Sbjct: 71  TTNGSLLKKFAPDLYKAGLSRVTVS 95


>gi|261339132|ref|ZP_05966990.1| hypothetical protein ENTCAN_05353 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318975|gb|EFC57913.1| putative pyruvate formate-lyase 3-activating enzyme [Enterobacter
           cancerogenus ATCC 35316]
          Length = 299

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118
           G    V ++   +       ++ G    L+GGEP +   +   L +A ++ G   AVET
Sbjct: 101 GDTQPVAEIMATVLRDKPFYDRSGGGITLSGGEPFMNPTLAHDLFKASHEHGIHTAVET 159


>gi|254464661|ref|ZP_05078072.1| putative Fe-S oxidoreductase, SAM radical superfamily
           [Rhodobacterales bacterium Y4I]
 gi|206685569|gb|EDZ46051.1| putative Fe-S oxidoreductase, SAM radical superfamily
           [Rhodobacterales bacterium Y4I]
          Length = 346

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 15/96 (15%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   F      K G         +I++     EK   Y   +
Sbjct: 58  CNL-----------RCPVCPVTFAM--SRKRGMMKPHVFRKIIDDFKDQREKPAIYFSFS 104

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQ 126
           G EP L  D+P  I   ++ G +  + TN T   P+
Sbjct: 105 G-EPTLHKDLPDFIAYAHENGHDTYLSTNATRLTPE 139


>gi|189500335|ref|YP_001959805.1| Radical SAM domain-containing protein [Chlorobium phaeobacteroides
           BS1]
 gi|189495776|gb|ACE04324.1| Radical SAM domain protein [Chlorobium phaeobacteroides BS1]
          Length = 447

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
           C +C   +   +        V ++A+ +E +  +G     +    GGEPLL     ++ +
Sbjct: 111 CPYC---YERPERFTMSPETVSRIAEYVEGELASGRYSSMHVTWYGGEPLLSGSFEVVVS 167

Query: 107 LNKR 110
           L+++
Sbjct: 168 LSEK 171


>gi|88811400|ref|ZP_01126655.1| Radical SAM domain Fe-S oxidoreductase [Nitrococcus mobilis Nb-231]
 gi|88791289|gb|EAR22401.1| Radical SAM domain Fe-S oxidoreductase [Nitrococcus mobilis Nb-231]
          Length = 385

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 8/87 (9%)

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
            R +V+Q    ++E             + GGEPL+  ++P +++ +  R   + + TN  
Sbjct: 57  KRLSVEQALGAVDE------CNAPVVSIPGGEPLIHKEMPRIVEGIIARKKFVYLCTN-A 109

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQE 148
           I   + +D    SP     + + G +E
Sbjct: 110 ILLAKKLDDYRPSPYLTFSVHLDGNRE 136


>gi|329937109|ref|ZP_08286738.1| hypothetical protein SGM_2230 [Streptomyces griseoaurantiacus M045]
 gi|329303716|gb|EGG47601.1| hypothetical protein SGM_2230 [Streptomyces griseoaurantiacus M045]
          Length = 347

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 38  CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  +++ L  +   + + TN  +   + +D    SP     + I G +E
Sbjct: 80  GGEPLMHPQIDEIVRQLVAKRKYVFLCTN-AMLLRKKMDKFKPSPYFAFTVHIDGLRE 136


>gi|301785101|ref|XP_002927965.1| PREDICTED: molybdenum cofactor biosynthesis protein 1-like
           [Ailuropoda melanoleuca]
          Length = 636

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +       K      +++  L       G  + R   LT
Sbjct: 80  CNL-----------RCQYCMPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 125

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GGEPL++ D V ++  L++  G   I + TNG
Sbjct: 126 GGEPLIRPDVVDIVARLHQLEGLRTIGITTNG 157


>gi|256810864|ref|YP_003128233.1| molybdenum cofactor biosynthesis protein A [Methanocaldococcus
           fervens AG86]
 gi|256794064|gb|ACV24733.1| molybdenum cofactor biosynthesis protein A [Methanocaldococcus
           fervens AG86]
          Length = 298

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 28/172 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C         +  GRY   +   LI +   + +   R   ++
Sbjct: 20  CNL-----------NCFYC---HKEGHNSNNGRYMTAEEIGLIAKT--STKFGVRKVKIS 63

Query: 92  GGEPLLQVDV-PLIQALNKRGFE-IAVETNGTI-------EPPQGIDWICVS-PKAGCDL 141
           GGEPLL+ D+  +I+ +     + I++ TNG +           G+D + VS      +L
Sbjct: 64  GGEPLLRKDICEIIENIKDEKIKDISLTTNGILLENLADKLKDAGLDRVNVSLDTLNPEL 123

Query: 142 --KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191
             KI    ++  V   +  + E  +      F    ++   L E        
Sbjct: 124 YKKITKFGDVNKVVNGIKRAIEEELTPLKVNFLAMSINIKELPEIMEFCRDV 175


>gi|109157586|pdb|2FB2|A Chain A, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT
 gi|109157587|pdb|2FB2|B Chain B, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT
          Length = 340

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D DFV +   K      D++A + +     G K+ R   +TGG
Sbjct: 22  DRCNFRCDYCMPKEVFGD-DFVFL--PKNELLTFDEMARIAKVYAELGVKKIR---ITGG 75

Query: 94  EPLLQVDVP-LIQALNKR-GFE-IAVETNG 120
           EPL++ D+  LI  LN+  G E I + TNG
Sbjct: 76  EPLMRRDLDVLIAKLNQIDGIEDIGLTTNG 105


>gi|49484483|ref|YP_041707.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257423751|ref|ZP_05600180.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257426429|ref|ZP_05602831.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257429068|ref|ZP_05605455.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257431715|ref|ZP_05608078.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257434675|ref|ZP_05610726.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus M876]
 gi|282902170|ref|ZP_06310063.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus C160]
 gi|282906610|ref|ZP_06314458.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282909580|ref|ZP_06317391.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911828|ref|ZP_06319624.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282915116|ref|ZP_06322893.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus M899]
 gi|282920843|ref|ZP_06328561.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus C427]
 gi|282925748|ref|ZP_06333396.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus C101]
 gi|283959046|ref|ZP_06376487.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293497520|ref|ZP_06665374.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293511095|ref|ZP_06669792.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus M809]
 gi|293549701|ref|ZP_06672373.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus M1015]
 gi|295428850|ref|ZP_06821474.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|81650568|sp|Q6GEG6|MOAA_STAAR RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|49242612|emb|CAG41333.1| putative molybdenum cofactor biosynthesis protein A [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257272769|gb|EEV04871.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257276060|gb|EEV07511.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257279549|gb|EEV10136.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257282594|gb|EEV12726.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257285271|gb|EEV15387.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus M876]
 gi|282312577|gb|EFB42981.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus C101]
 gi|282315258|gb|EFB45642.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus C427]
 gi|282320837|gb|EFB51171.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus M899]
 gi|282323524|gb|EFB53840.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282326559|gb|EFB56861.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282329509|gb|EFB59030.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282596629|gb|EFC01588.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus C160]
 gi|283788638|gb|EFC27465.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290918748|gb|EFD95824.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291096451|gb|EFE26709.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291466082|gb|EFF08611.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus M809]
 gi|295127199|gb|EFG56841.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|312437321|gb|ADQ76392.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|315193523|gb|EFU23919.1| putative molybdenum cofactor biosynthesis protein A [Staphylococcus
           aureus subsp. aureus CGS00]
          Length = 340

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D DFV +   K      D++A + +     G K+ R   +TGG
Sbjct: 22  DRCNFRCDYCMPKEVFGD-DFVFL--PKNELLTFDEMARIAKVYAELGVKKIR---ITGG 75

Query: 94  EPLLQVDVP-LIQALNKR-GFE-IAVETNG 120
           EPL++ D+  LI  LN+  G E I + TNG
Sbjct: 76  EPLMRRDLDVLIAKLNQIDGIEDIGLTTNG 105


>gi|317153910|ref|YP_004121958.1| Radical SAM domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944161|gb|ADU63212.1| Radical SAM domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 389

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 6/97 (6%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           C L +       +  C+ C            G  +  +   LI+     G       + T
Sbjct: 44  CRLIAWEVTRSCNLACKHC--RAEAHPEPYEGELSTTEAKALIDTFPDVG---SPIIIFT 98

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEPPQG 127
           GGEP++      LI     +G    +  NGT+  P+ 
Sbjct: 99  GGEPMMRHDVYELIAYAKAKGLRCVMAPNGTLITPET 135


>gi|229542808|ref|ZP_04431868.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Bacillus coagulans 36D1]
 gi|229327228|gb|EEN92903.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Bacillus coagulans 36D1]
          Length = 158

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 29/104 (27%), Gaps = 25/104 (24%)

Query: 15  GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI 74
           GEG       +F  F+GC  +     +  S                 G    V+ +   +
Sbjct: 14  GEGLRT---VIF--FAGCPHFCKGCHNPRSWNIH------------NGTEMPVEDVVAEV 56

Query: 75  EEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAV 116
                           +GGEP  Q      + + L   G  I V
Sbjct: 57  ------AGNPLTDVTFSGGEPFFQAQEVCEVAKRLKALGKNIWV 94


>gi|317494866|ref|ZP_07953277.1| radical SAM superfamily protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917191|gb|EFV38539.1| radical SAM superfamily protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 233

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119
           G   +++ L   + +  +     G    L+GGE L+Q    L  +  L + G   A+ET 
Sbjct: 36  GRDISLENLLKEVLKDDVFFRTSGGGVTLSGGEVLMQAPFALQFLTRLKELGINTAIETA 95

Query: 120 G 120
           G
Sbjct: 96  G 96


>gi|313889016|ref|ZP_07822675.1| putative pyruvate formate-lyase 1-activating enzyme [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312845002|gb|EFR32404.1| putative pyruvate formate-lyase 1-activating enzyme [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 309

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           KG   NV+++   +++      +      L+GGE L+Q +    + +A   RG+  A+ET
Sbjct: 111 KGKVMNVEEVITELKKDDSFYYRSNGGITLSGGETLMQPEFAKEIFKACRSRGWHTAIET 170

Query: 119 NG------TIEPPQGIDWICVSPKAGCD 140
            G        +    ID + +  KA  D
Sbjct: 171 EGYASEEVIRDVVPHIDLVLLDIKANND 198


>gi|296444443|ref|ZP_06886408.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Methylosinus trichosporium OB3b]
 gi|296258090|gb|EFH05152.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Methylosinus trichosporium OB3b]
          Length = 383

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 24/143 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C              + +D+     +      E      V+ 
Sbjct: 38  CNL-----------ACAGC-------GKIDYPDHILDKRLSAADSLASVDECGAPVVVIA 79

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
           GGEPLL  ++P ++Q +  R     V TN  +   + ID    SP     + + G +E+ 
Sbjct: 80  GGEPLLHKELPQIVQGIMARKKFAIVCTN-ALLLAKKIDQYEPSPYFTWSIHLDGDEEM- 137

Query: 151 LVFPQVNVSPENYIGFDFERFSL 173
                  VS +       E  +L
Sbjct: 138 ---HDRAVSQKGVYKRAVEAIAL 157


>gi|260596662|ref|YP_003209233.1| pyrroloquinoline quinone biosynthesis protein PqqE [Cronobacter
           turicensis z3032]
 gi|260215839|emb|CBA28321.1| Coenzyme PQQ synthesis protein E [Cronobacter turicensis z3032]
          Length = 378

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF   +          Q  D+  +    G  +  +  
Sbjct: 10  PLWLLAELTYRCPLQCPYCSNPLDFAAQE----NELTTAQWIDVFRQARAMGAVQLGF-- 63

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +GGEPL++ D+P LI A    GF   + T+G
Sbjct: 64  -SGGEPLVRKDLPELIAAARGMGFYTNLITSG 94


>gi|212224671|ref|YP_002307907.1| hypothetical protein TON_1520 [Thermococcus onnurineus NA1]
 gi|212009628|gb|ACJ17010.1| hypothetical protein, conserved [Thermococcus onnurineus NA1]
          Length = 590

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L +    +R +  C +C   F   +G       ++Q+  ++               LTGG
Sbjct: 139 LLNIVLTNRCNLSCWYC--FFYAKEGQPIYEPTLEQIRMMLRNAKKEHPIGANAVQLTGG 196

Query: 94  EPLLQVDV-PLIQALNKRGF-EIAVETNG 120
           EP L+ D+  +I+   + G+  + + T+G
Sbjct: 197 EPTLRNDLIEIIRIAKEEGYDHVQLNTDG 225


>gi|331646167|ref|ZP_08347270.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M605]
 gi|331044919|gb|EGI17046.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M605]
          Length = 255

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 36  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKELVTYRHFMNASG 80

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 81  GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNG 117


>gi|312961514|ref|ZP_07776015.1| anaerobic ribonucleoside-triphosphate reductase-activating protein
           [Pseudomonas fluorescens WH6]
 gi|311284193|gb|EFQ62773.1| anaerobic ribonucleoside-triphosphate reductase-activating protein
           [Pseudomonas fluorescens WH6]
          Length = 231

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 11/113 (9%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L         + +CR+C            GR  VD     +       +      V +GG
Sbjct: 22  LACVLFCQGCAWRCRYC---HNPDLIPPRGRSEVD--WRRVLLFLQRRQDLLDAVVFSGG 76

Query: 94  EPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCD 140
           EP LQ  +P  +  +   GF I + + G          +  DW+    KA  +
Sbjct: 77  EPTLQEGLPGAMDEVRAMGFRIGLHSAGIKPAGFANALRHADWVGFDVKALAE 129


>gi|254303484|ref|ZP_04970842.1| possible iron-sulfur (Fe-S) dehydrogenase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148323676|gb|EDK88926.1| possible iron-sulfur (Fe-S) dehydrogenase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 253

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 14/103 (13%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105
           C FCD  F            +D  + ++ E  I      ++   TGGEP L  D+  ++ 
Sbjct: 36  CIFCD--FWQRNDIVFKEITLDNFSKVV-EFLIKESNAFKF---TGGEPCLNPDLKEMMN 89

Query: 106 ALNKRGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDL 141
            +   G  + ++TNG+       +   + ID I +S K    +
Sbjct: 90  IIKTHGGIVFLDTNGSMFTKVKELVDEKLIDVIGISLKGNTPI 132


>gi|99034360|ref|ZP_01314386.1| hypothetical protein Wendoof_01000814 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 323

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 46/128 (35%), Gaps = 19/128 (14%)

Query: 46  QCRFCD--TDFVGIQGTKGGR------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
            C  C+  + +  ++  K  +       +++ +  +I+E    G         T GEPL+
Sbjct: 1   ACVMCECFSPYSKVKEEKKAKGIKPKIMSIETIRKVIKEAD--GTPLREIIPSTMGEPLM 58

Query: 98  QVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156
                 +I   ++ G ++ + TNG+        W         +L +    ++K+ +   
Sbjct: 59  YKSFDEIINLCHEFGLKLNLTTNGSFPIKGARKW--------AELLVPILSDVKISWNGA 110

Query: 157 NVSPENYI 164
                  I
Sbjct: 111 TKETHERI 118


>gi|15922400|ref|NP_378069.1| hypothetical protein ST2079 [Sulfolobus tokodaii str. 7]
 gi|15623189|dbj|BAB67178.1| 351aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 351

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 59/181 (32%), Gaps = 31/181 (17%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWITGEKE 84
           CR  G               C +C   +             +V  L D I E +      
Sbjct: 37  CRLGG--KLVVYITGECGDSCYYCPVSYERFGKDVMFANETHVSSLLDYIYEAYRMNALG 94

Query: 85  GRYCVLTGGEPLLQVD--VPLIQALNK---RGFEIAVETNG---TIEPPQGIDWICVSPK 136
                +TGG+P+L +D  V LI+ L       F I + T+G   T +  + +D +     
Sbjct: 95  AG---ITGGDPILAIDRVVSLIRLLKDEFGEEFHIHLYTSGRYVTNDVLRELDKV----- 146

Query: 137 AGCDLKIKGGQELKL--VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
                   G  E++   V  +   + E  + + F+     P      E    L I +  +
Sbjct: 147 --------GLDEIRFHPVKEEYLKAVEKALKYSFDVGLEIPAIPGEEEYAEKL-IKWAIE 197

Query: 195 N 195
            
Sbjct: 198 K 198


>gi|297244007|ref|ZP_06927897.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A8796]
 gi|297178785|gb|EFH38030.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A8796]
          Length = 340

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D DFV +   K      D++A + +     G K+ R   +TGG
Sbjct: 22  DRCNFRCDYCMPKEVFGD-DFVFL--PKNELLTFDEMARIAKVYAELGVKKIR---ITGG 75

Query: 94  EPLLQVDVP-LIQALNKR-GFE-IAVETNG 120
           EPL++ D+  LI  LN+  G E I + TNG
Sbjct: 76  EPLMRRDLDVLIAKLNQIDGIEDIGLTTNG 105


>gi|254518626|ref|ZP_05130682.1| molybdenum cofactor biosynthesis protein A [Clostridium sp.
           7_2_43FAA]
 gi|226912375|gb|EEH97576.1| molybdenum cofactor biosynthesis protein A [Clostridium sp.
           7_2_43FAA]
          Length = 323

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 21/122 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C  +       K  +   D++  ++ E    G K+ R+   T
Sbjct: 20  CNL-----------RCIYCMEEKNNTFLKKEDKLTNDEIYKIVCESAKLGIKKVRF---T 65

Query: 92  GGEPLLQVDV-PLIQALNK-RGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL++ D+  L+Q +N  +G  EI + TNG I   + ++ +    KAG          
Sbjct: 66  GGEPLVRKDIVELMQRINTIQGIEEIYLTTNG-ILLEENVEILA---KAGLKGVNISLDS 121

Query: 149 LK 150
           LK
Sbjct: 122 LK 123


>gi|229543504|ref|ZP_04432564.1| molybdenum cofactor biosynthesis protein A [Bacillus coagulans
           36D1]
 gi|229327924|gb|EEN93599.1| molybdenum cofactor biosynthesis protein A [Bacillus coagulans
           36D1]
          Length = 333

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C     G +     R  +    ++     +      R   LTGGEPLL+ D
Sbjct: 19  DRCNFRCTYCMPADNGQKYCFMNRSELMTFEEITRLARLFVSLGVRKIRLTGGEPLLRKD 78

Query: 101 VP-LIQALNKR-GFE-IAVETNG 120
           +  L+  L++  G E ++V TNG
Sbjct: 79  IDQLVAMLHQIDGLEDLSVTTNG 101


>gi|85859300|ref|YP_461502.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB]
 gi|85722391|gb|ABC77334.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB]
          Length = 331

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 36/110 (32%), Gaps = 23/110 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C      F    G +    +   LA           +     V  
Sbjct: 64  CNLSC--------LACP-----FHQRAGEEKANMSW-SLAR--ASLDALKHQGTLIVVFE 107

Query: 92  GGEPLLQVD--VPLIQALNKRGF---EIAVETNGT--IEPPQGIDWICVS 134
           GGEP L  D    L   +N  G     +AV TNGT  ++ P  I W+ + 
Sbjct: 108 GGEPFLWRDGRHDLHDLVNYAGRLFPRVAVTTNGTFPLDVPADILWVSLD 157


>gi|327311440|ref|YP_004338337.1| molybdenum cofactor biosynthesis protein MoaA [Thermoproteus
           uzoniensis 768-20]
 gi|326947919|gb|AEA13025.1| molybdenum cofactor biosynthesis protein (moaA) [Thermoproteus
           uzoniensis 768-20]
          Length = 255

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 15/92 (16%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL  G      +             +   G     D +A  + E   +         +
Sbjct: 46  GCNLRCGMCWAWRN----------SSFRLDVGDFMRPDVVARRLAEMARSRGIAQLR--I 93

Query: 91  TGGEPLLQVDVPLIQALNK--RGFEIAVETNG 120
           +GGEP +     L+  L      +   VETNG
Sbjct: 94  SGGEPTIAP-RHLLAVLKSVPESYTFIVETNG 124


>gi|310642884|ref|YP_003947642.1| radical sam domain protein [Paenibacillus polymyxa SC2]
 gi|309247834|gb|ADO57401.1| Radical SAM domain protein [Paenibacillus polymyxa SC2]
          Length = 323

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 18/86 (20%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT--GGEPLLQVDVPL 103
           +C +C       +  K  R + + +   I++       + ++  ++  GGEPLL  D+ L
Sbjct: 30  RCTYC------YEDFKMKRMSPETI-QAIKKFLTRRVPQLKHLTISWFGGEPLLAKDILL 82

Query: 104 -----IQALNKRG----FEIAVETNG 120
                 Q L+ +     + I++ TNG
Sbjct: 83  NISEHAQKLSTKNNLTSYLISITTNG 108


>gi|290968352|ref|ZP_06559893.1| pyruvate formate-lyase 1-activating enzyme [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781627|gb|EFD94214.1| pyruvate formate-lyase 1-activating enzyme [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 279

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 21/100 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK- 83
           VF    GC++           +CR+C       +        V    D+ ++        
Sbjct: 27  VF--LQGCHM-----------RCRYC----HNPETWACSGGTVRTAEDVFKQALRYRSYW 69

Query: 84  -EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
             G    ++GGE LLQ++    L +     G   A++T G
Sbjct: 70  KNGGGITVSGGEALLQMEFVTELFRLAKAEGIHTAIDTAG 109


>gi|257126689|ref|YP_003164803.1| glycyl-radical enzyme activating protein family [Leptotrichia
           buccalis C-1013-b]
 gi|257050628|gb|ACV39812.1| glycyl-radical enzyme activating protein family [Leptotrichia
           buccalis C-1013-b]
          Length = 272

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 23/113 (20%)

Query: 29  FSGCNLWSGREQDRLSAQ-------------------CRFCDTDFVGIQGTKGGRYNVDQ 69
           F GC L      +  + +                   C  C                +++
Sbjct: 25  FKGCPLRCLWCSNPETQKLENEFWDYDGSLYKGNKTSCSGC--PAANTLKQVAKDMTLEE 82

Query: 70  LADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
           +  ++ +        G    L+GGE L+     + L + L +     A+ET G
Sbjct: 83  VFAIVMKDENFYRNSGGGVTLSGGEILVNSAFAIELFEKLKEEYINTAIETTG 135


>gi|228477166|ref|ZP_04061804.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           salivarius SK126]
 gi|228251185|gb|EEK10356.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           salivarius SK126]
          Length = 266

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 66/179 (36%), Gaps = 38/179 (21%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +C++C   DT    ++ 
Sbjct: 16  TESFGSVDGPG---------IRFIVFMQGC-----------KMRCQYCHNPDT--WAMES 53

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117
            K     V+ + D          ++G    ++GGE +LQ+D    L     K G    ++
Sbjct: 54  NKAVERTVEDVLDEALRFRHFWGEQGG-ITVSGGEAMLQIDFVTALFTEAKKLGIHCTLD 112

Query: 118 TNG-----TIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
           T G     T E  + +D  + V+     D+K    ++ K V  Q N +   +  +  ++
Sbjct: 113 TCGFAYRNTPEYHEVVDKLLAVTDLVLLDIKEIDPEQHKFVTRQPNKNILEFAQYLSDK 171


>gi|85859326|ref|YP_461528.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB]
 gi|85722417|gb|ABC77360.1| radical SAM superfamily [Syntrophus aciditrophicus SB]
          Length = 408

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 14/99 (14%)

Query: 31  GC------NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           GC       +W       LS  C  C                  +   LI++  I     
Sbjct: 56  GCIGYPGHPVWEVTRACNLS--CIHC---HAKSSQAASDELTTAEGKRLIDQ--IASMPA 108

Query: 85  GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
            R  V TGGEPL++ D+  L++   K G    + TNGT+
Sbjct: 109 FRTLVFTGGEPLVRKDIFELLRHSQKAGLANILATNGTL 147


>gi|305664178|ref|YP_003860466.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378747|gb|ADM28586.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
          Length = 268

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 23/96 (23%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTK----GGRYNVDQLADLIEEQWITGEKEGR 86
           GCNL           +C FC   +    G+     G  Y+  +++ ++    I  EK   
Sbjct: 57  GCNL-----------RCGFC---WSWRSGSHVIDVGKFYSSQEVSTILIS--IAREKGYN 100

Query: 87  YCVLTGGEPLLQVDVPLIQALNKRGFEIA--VETNG 120
           Y  ++GGEP L  +  LI  ++     I   +ETNG
Sbjct: 101 YVRISGGEPTLCFN-HLIDVISNIPQRITFILETNG 135


>gi|281353482|gb|EFB29066.1| hypothetical protein PANDA_017831 [Ailuropoda melanoleuca]
          Length = 605

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +       K      +++  L       G  + R   LT
Sbjct: 42  CNL-----------RCQYCMPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 87

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GGEPL++ D V ++  L++  G   I + TNG
Sbjct: 88  GGEPLIRPDVVDIVARLHQLEGLRTIGITTNG 119


>gi|25169122|emb|CAD47958.1| molybdopterin cofactor synthesis protein moaA [Arthrobacter
           nicotinovorans]
          Length = 371

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 23/108 (21%)

Query: 21  GRVAVFCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEE 76
           GR A   R S    CNL           +C +C    +  +G +   +  V   ++++  
Sbjct: 35  GRRATDMRLSLTDKCNL-----------RCTYC----MPAEGLEWLSKQAVMSASEIVRI 79

Query: 77  QWI-TGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRG--FEIAVETNG 120
             I  G    R   LTGGEPL+    V +I  L +      I++ TNG
Sbjct: 80  VGIGVGRLGVRELRLTGGEPLVRHDLVDIIAELRRNHPELPISMTTNG 127


>gi|3024141|sp|Q44118|MOAA_ARTNI RecName: Full=Probable molybdopterin cofactor synthesis protein A
 gi|2288875|emb|CAA71779.1| molybdopterin co-factor synthesis protein [Arthrobacter
           nicotinovorans]
          Length = 355

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 23/108 (21%)

Query: 21  GRVAVFCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEE 76
           GR A   R S    CNL           +C +C    +  +G +   +  V   ++++  
Sbjct: 18  GRRATDMRLSLTDKCNL-----------RCTYC----MPAEGLEWLSKQAVMSASEIVRI 62

Query: 77  QWI-TGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRG--FEIAVETNG 120
             I  G    R   LTGGEPL+    V +I  L +      I++ TNG
Sbjct: 63  VGIGVGRLGVRELRLTGGEPLVRHDLVDIIAELRRNHPELPISMTTNG 110


>gi|871980|emb|CAA55583.1| molybdopterin cofactor synthesis protein [Arthrobacter
           nicotinovorans]
          Length = 374

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 23/108 (21%)

Query: 21  GRVAVFCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEE 76
           GR A   R S    CNL           +C +C    +  +G +   +  V   ++++  
Sbjct: 37  GRRATDMRLSLTDKCNL-----------RCTYC----MPAEGLEWLSKQAVMSASEIVRI 81

Query: 77  QWI-TGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRG--FEIAVETNG 120
             I  G    R   LTGGEPL+    V +I  L +      I++ TNG
Sbjct: 82  VGIGVGRLGVRELRLTGGEPLVRHDLVDIIAELRRNHPELPISMTTNG 129


>gi|16082274|ref|NP_394732.1| tRNA-modifying enzyme [Thermoplasma acidophilum DSM 1728]
 gi|10640621|emb|CAC12399.1| putative target YPL207w of the HAP2 transcriptional complex related
           protein [Thermoplasma acidophilum]
          Length = 312

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 41/117 (35%), Gaps = 28/117 (23%)

Query: 44  SAQCRFC------DTDFVGIQGTKG--GRYNVDQLADLI----------EEQWITGEKEG 85
           +  C FC      D+  +  +         ++ Q   LI          +E W       
Sbjct: 63  TENCAFCWRFQGFDSMHISDEDDPEFILEESIKQHLKLISGFKGNPKVSKEIWEEATHPK 122

Query: 86  RY-CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE-PPQGID------WICV 133
                LTG EP L   +  LI A  KRG    + TNGT+    + +D      ++ V
Sbjct: 123 HMAISLTG-EPTLYTRLGELIAAAKKRGISTFLVTNGTLPSVLERLDPLPTQLYVTV 178


>gi|15927848|ref|NP_375381.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus N315]
 gi|21283915|ref|NP_647003.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49487049|ref|YP_044270.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|57650853|ref|YP_187068.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus COL]
 gi|87161067|ref|YP_494854.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88196183|ref|YP_501000.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|148268706|ref|YP_001247649.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394772|ref|YP_001317447.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus JH1]
 gi|151222380|ref|YP_001333202.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|161510463|ref|YP_001576122.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253314609|ref|ZP_04837822.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|253729935|ref|ZP_04864100.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|257794612|ref|ZP_05643591.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A9781]
 gi|258408785|ref|ZP_05681069.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A9763]
 gi|258422383|ref|ZP_05685295.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A9719]
 gi|258439773|ref|ZP_05690519.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A9299]
 gi|258442671|ref|ZP_05691231.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A8115]
 gi|258446630|ref|ZP_05694785.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A6300]
 gi|258450252|ref|ZP_05698344.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A6224]
 gi|258450738|ref|ZP_05698797.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A5948]
 gi|258455375|ref|ZP_05703335.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A5937]
 gi|262048529|ref|ZP_06021413.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           D30]
 gi|262052284|ref|ZP_06024488.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           930918-3]
 gi|269203899|ref|YP_003283168.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282893707|ref|ZP_06301939.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A8117]
 gi|282922136|ref|ZP_06329832.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A9765]
 gi|282926815|ref|ZP_06334442.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A10102]
 gi|283767359|ref|ZP_06340274.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus H19]
 gi|284025292|ref|ZP_06379690.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus 132]
 gi|294848805|ref|ZP_06789550.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A9754]
 gi|295404949|ref|ZP_06814762.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A8819]
 gi|300910930|ref|ZP_07128380.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304379453|ref|ZP_07362188.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|54037811|sp|P65389|MOAA_STAAW RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|54041471|sp|P65388|MOAA_STAAN RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|66773819|sp|P69848|MOAA_STAA8 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|81648816|sp|Q6G754|MOAA_STAAS RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|81693942|sp|Q5HDT9|MOAA_STAAC RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|123722359|sp|Q2FEM4|MOAA_STAA3 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|172049050|sp|A6QJA8|MOAA_STAAE RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|189028696|sp|A6U3Z2|MOAA_STAA2 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|189028697|sp|A5IV50|MOAA_STAA9 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|189028698|sp|A8Z366|MOAA_STAAT RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|52695872|pdb|1TV7|A Chain A, Structure Of The S-Adenosylmethionine Dependent Enzyme
           Moaa
 gi|52695873|pdb|1TV7|B Chain B, Structure Of The S-Adenosylmethionine Dependent Enzyme
           Moaa
 gi|52695874|pdb|1TV8|A Chain A, Structure Of Moaa In Complex With S-Adenosylmethionine
 gi|52695875|pdb|1TV8|B Chain B, Structure Of Moaa In Complex With S-Adenosylmethionine
 gi|109157588|pdb|2FB3|A Chain A, Structure Of Moaa In Complex With 5'-Gtp
 gi|109157589|pdb|2FB3|B Chain B, Structure Of Moaa In Complex With 5'-Gtp
 gi|13702068|dbj|BAB43360.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus N315]
 gi|21205357|dbj|BAB96051.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49245492|emb|CAG43969.1| putative molybdenum cofactor biosynthesis protein A [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57285039|gb|AAW37133.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus COL]
 gi|87127041|gb|ABD21555.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|87203741|gb|ABD31551.1| molybdopterin cofactor biosynthesis protein A, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147741775|gb|ABQ50073.1| GTP cyclohydrolase subunit MoaA [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149947224|gb|ABR53160.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus JH1]
 gi|150375180|dbj|BAF68440.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|160369272|gb|ABX30243.1| molybdenum (Mo2+) cofactor biosynthesis protein A [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253726382|gb|EES95111.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|257788584|gb|EEV26924.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A9781]
 gi|257840468|gb|EEV64928.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A9763]
 gi|257841814|gb|EEV66251.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A9719]
 gi|257847549|gb|EEV71551.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A9299]
 gi|257851792|gb|EEV75726.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A8115]
 gi|257854698|gb|EEV77646.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A6300]
 gi|257856344|gb|EEV79253.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A6224]
 gi|257861521|gb|EEV84323.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A5948]
 gi|257862586|gb|EEV85354.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A5937]
 gi|259159803|gb|EEW44843.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           930918-3]
 gi|259163387|gb|EEW47945.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           D30]
 gi|262076189|gb|ACY12162.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282591266|gb|EFB96339.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A10102]
 gi|282593604|gb|EFB98597.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A9765]
 gi|282763765|gb|EFC03893.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A8117]
 gi|283461238|gb|EFC08322.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus H19]
 gi|285817930|gb|ADC38417.1| Molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           04-02981]
 gi|294824184|gb|EFG40608.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A9754]
 gi|294969894|gb|EFG45912.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A8819]
 gi|298695526|gb|ADI98748.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus ED133]
 gi|300887910|gb|EFK83105.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304341985|gb|EFM07889.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|312830616|emb|CBX35458.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315129647|gb|EFT85638.1| molybdenum (Mo2+) cofactor biosynthesis protein A [Staphylococcus
           aureus subsp. aureus CGS03]
 gi|315198198|gb|EFU28529.1| molybdenum (Mo2+) cofactor biosynthesis protein A [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|329314952|gb|AEB89365.1| Molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329723623|gb|EGG60152.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329730314|gb|EGG66704.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus 21193]
 gi|329732017|gb|EGG68372.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 340

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D DFV +   K      D++A + +     G K+ R   +TGG
Sbjct: 22  DRCNFRCDYCMPKEVFGD-DFVFL--PKNELLTFDEMARIAKVYAELGVKKIR---ITGG 75

Query: 94  EPLLQVDVP-LIQALNKR-GFE-IAVETNG 120
           EPL++ D+  LI  LN+  G E I + TNG
Sbjct: 76  EPLMRRDLDVLIAKLNQIDGIEDIGLTTNG 105


>gi|303232902|ref|ZP_07319585.1| pyruvate formate-lyase 1-activating enzyme [Atopobium vaginae
          PB189-T1-4]
 gi|302480994|gb|EFL44071.1| pyruvate formate-lyase 1-activating enzyme [Atopobium vaginae
          PB189-T1-4]
          Length = 278

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
          R+ VF    GC             +C++C         T G    V ++ D+ E      
Sbjct: 19 RLVVF--TQGCPF-----------RCKYCHNPETWGFKT-GTTMKVQEIMDIYERNRPFY 64

Query: 82 EKEGRYCVLTGGEPLLQV 99
           K G     +GGEPL Q 
Sbjct: 65 RKGG--ITCSGGEPLAQP 80


>gi|261855208|ref|YP_003262491.1| molybdenum cofactor biosynthesis protein A [Halothiobacillus
           neapolitanus c2]
 gi|261835677|gb|ACX95444.1| molybdenum cofactor biosynthesis protein A [Halothiobacillus
           neapolitanus c2]
          Length = 328

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 61/174 (35%), Gaps = 32/174 (18%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPL--- 96
           DR   +C +C              +   D++  L+    +  E   R   +TGGEPL   
Sbjct: 21  DRCDLRCFYC-MPEGFNDFEVPEHWLTADEIERLL---GVMAEMGLRRVRITGGEPLVRR 76

Query: 97  -LQVDVPLIQALNKRGFE-IAVETN----GTIEPP---QGIDWICVSPKAGCDLKIKGGQ 147
            ++  V  I AL   G   IA+ TN    G +  P    G+D I VS      L      
Sbjct: 77  GIEDIVRRIDAL--PGIRDIALSTNATRLGKMAAPLKAAGVDRINVS------LDTLDAD 128

Query: 148 ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF------LEENTNLAISYCFQN 195
             K +  Q  +S         +   L P+           E++    + +C ++
Sbjct: 129 RFKQI-TQGKLSKVIDGLMAAKDAGLSPIKLNMVVMKGVNEDDVESVLEFCIEH 181


>gi|169633583|ref|YP_001707319.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
           baumannii SDF]
 gi|226704988|sp|B0VQD7|PQQE_ACIBS RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|169152375|emb|CAP01316.1| coenzyme PQQ synthesis protein E (Coenzyme PQQ synthesis protein
           III) [Acinetobacter baumannii]
          Length = 384

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 20/174 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    D+   +          +  D+ ++    G  +  +  
Sbjct: 8   PLWLLAELTYRCLLQCPYCSNPLDYAQHK----NELTTQEWFDVFDQARQMGAVQLGF-- 61

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140
            +GGEPL+ Q    L+   ++ GF   + T+G        +     G+D I +S +A   
Sbjct: 62  -SGGEPLVRQDLEQLVAHAHQLGFYTNLVTSGMGLTEQRISHLKQAGLDHIQISFQASDP 120

Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
           +        K  F Q          +D+    L  +      +  +  I  C +
Sbjct: 121 VLNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIDKIIELCLE 173


>gi|307325385|ref|ZP_07604587.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Streptomyces violaceusniger Tu 4113]
 gi|306888854|gb|EFN19838.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Streptomyces violaceusniger Tu 4113]
          Length = 341

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 36/118 (30%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 39  CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 80

Query: 92  GGEPLLQVDVPLIQA-LNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  I   L +R   + + TN  +   + +     SP     + I G +E
Sbjct: 81  GGEPLMHPQIDEIARQLVQRKKYVFLCTN-AMLLRKKMHLFTPSPYFAFAVHIDGLRE 137


>gi|301063602|ref|ZP_07204116.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300442250|gb|EFK06501.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 366

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 17/95 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            S CNL           +C++C        G        ++     EE       E    
Sbjct: 15  TSKCNL-----------RCKYC--YHFNSAGETKEDIETEEWLRFFEELKQCVVME---V 58

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
            L GGEP L+ D+  ++ +L +     ++ +NGT+
Sbjct: 59  CLGGGEPFLRDDLKEILSSLARNQIRFSIMSNGTL 93


>gi|297379966|gb|ADI34853.1| Probable molybdenum cofactor biosynthesis protein A [Helicobacter
           pylori v225d]
          Length = 293

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 25/154 (16%)

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIA--VETN 119
               +D + + ++     G K+ R   +TGGEPLL+      I  L+    E+A  + TN
Sbjct: 13  ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDEFIAKLHDYNKEVALVLSTN 69

Query: 120 GTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
           G +      D        + V   S K+   LKI     LK     V  S +  +     
Sbjct: 70  GFLLKKMAKDLKNAGLSRVNVSLDSLKSDRVLKISQKDALKKTLEGVEESLKVGLKL--- 126

Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQ 203
           + ++  +     +E   L + Y         S+Q
Sbjct: 127 KLNMVVIKSVNDDEILEL-LEYAKDR-----SIQ 154


>gi|258422713|ref|ZP_05685618.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A9635]
 gi|257847124|gb|EEV71133.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           A9635]
          Length = 340

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D DFV +   K      D++A + +     G K+ R   +TGG
Sbjct: 22  DRCNFRCDYCMPKEVFGD-DFVFL--PKNELLTFDEMARIAKVYAELGVKKIR---ITGG 75

Query: 94  EPLLQVDVP-LIQALNKR-GFE-IAVETNG 120
           EPL++ D+  LI  LN+  G E I + TNG
Sbjct: 76  EPLMRRDLDVLIAKLNQIDGIEDIGLTTNG 105


>gi|303234218|ref|ZP_07320864.1| six-Cys-in-45 modification radical SAM protein [Finegoldia magna
           BVS033A4]
 gi|302494759|gb|EFL54519.1| six-Cys-in-45 modification radical SAM protein [Finegoldia magna
           BVS033A4]
          Length = 452

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 29/113 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRY--C 88
           CNL           +C +C   F       G + Y  +++     +  +      ++   
Sbjct: 101 CNL-----------KCEYC---FASQGDFGGHKAYMTEEVGKKALKYLVDNSGSRKFLEV 146

Query: 89  VLTGGEPLLQVDVPLIQALNKRG----------FEIAVETNGTIEPPQGIDWI 131
              GGEPL+  D  L++ L K G          F   + TNG +     ID+I
Sbjct: 147 DFFGGEPLM--DFELVKKLVKYGNEIAEEKGKKFRFTITTNGVLLDDDKIDFI 197


>gi|302379699|ref|ZP_07268184.1| six-Cys-in-45 modification radical SAM protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312606|gb|EFK94602.1| six-Cys-in-45 modification radical SAM protein [Finegoldia magna
           ACS-171-V-Col3]
          Length = 452

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 29/113 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRY--C 88
           CNL           +C +C   F       G + Y  +++     +  +      ++   
Sbjct: 101 CNL-----------KCEYC---FASQGDFGGHKAYMTEEVGKKALKYLVDNSGSRKFLEV 146

Query: 89  VLTGGEPLLQVDVPLIQALNKRG----------FEIAVETNGTIEPPQGIDWI 131
              GGEPL+  D  L++ L K G          F   + TNG +     ID+I
Sbjct: 147 DFFGGEPLM--DFELVKKLVKYGNEIAEEKGKKFRFTITTNGVLLDDDKIDFI 197


>gi|301059499|ref|ZP_07200412.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300446394|gb|EFK10246.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 381

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 21/102 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C       +G K          D I+          R     
Sbjct: 66  CNL-----------DCHYC-----YSRGRKIPGMTTKTAKDAID---WLQNVGCRVLAYM 106

Query: 92  GGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           GGEPL++ D  + + +   +RGF + + TNG +     ID I
Sbjct: 107 GGEPLIRKDFIIEITRYAVERGFFVYLPTNGILLDAPFIDEI 148


>gi|297587385|ref|ZP_06946030.1| radical SAM domain protein [Finegoldia magna ATCC 53516]
 gi|297575366|gb|EFH94085.1| radical SAM domain protein [Finegoldia magna ATCC 53516]
          Length = 452

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 29/113 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRY--C 88
           CNL           +C +C   F       G + Y  +++     +  +      ++   
Sbjct: 101 CNL-----------KCEYC---FASQGDFGGHKAYMTEEVGKKALKYLVDNSGSRKFLEV 146

Query: 89  VLTGGEPLLQVDVPLIQALNKRG----------FEIAVETNGTIEPPQGIDWI 131
              GGEPL+  D  L++ L K G          F   + TNG +     ID+I
Sbjct: 147 DFFGGEPLM--DFELVKKLVKYGNEIADEKGKKFRFTITTNGVLLDDDKIDFI 197


>gi|221317881|ref|ZP_03599175.1| YfkA [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221322154|ref|ZP_03603448.1| YfkA [Bacillus subtilis subsp. subtilis str. SMY]
 gi|255767189|ref|NP_388677.2| Fe-S oxidoreductase, radical SAM superfamily [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|321314524|ref|YP_004206811.1| putative Fe-S oxidoreductase, radical SAM superfamily protein
           [Bacillus subtilis BSn5]
 gi|261278024|sp|O34400|YFKA_BACSU RecName: Full=Putative protein yfkA
 gi|225184816|emb|CAB12625.2| putative Fe-S oxidoreductase, radical SAM superfamily [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|291483237|dbj|BAI84312.1| hypothetical protein BSNT_01329 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320020798|gb|ADV95784.1| putative Fe-S oxidoreductase, radical SAM superfamily protein
           [Bacillus subtilis BSn5]
          Length = 373

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 13/92 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   +EE         R   +TGGEP+L +      
Sbjct: 45  RCEHCAVGYT-LQPKDPNALPIDLLLKRLEEI-----PRLRSISITGGEPMLSLKSVKEY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
            VPL++  ++RG    + +N T++  +  +WI
Sbjct: 99  VVPLLKYAHERGVRTQINSNLTLDI-ERYEWI 129


>gi|169824972|ref|YP_001692583.1| arylsulfatase regulator [Finegoldia magna ATCC 29328]
 gi|167831777|dbj|BAG08693.1| arylsulfatase regulator [Finegoldia magna ATCC 29328]
          Length = 452

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 29/113 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRY--C 88
           CNL           +C +C   F       G + Y  +++     +  +      ++   
Sbjct: 101 CNL-----------KCEYC---FASQGDFGGHKAYMTEEVGKKALKYLVDNSGSRKFLEV 146

Query: 89  VLTGGEPLLQVDVPLIQALNKRG----------FEIAVETNGTIEPPQGIDWI 131
              GGEPL+  D  L++ L K G          F   + TNG +     ID+I
Sbjct: 147 DFFGGEPLM--DFELVKKLVKYGNEIAEEKGKKFRFTITTNGVLLDDDKIDFI 197


>gi|258404207|ref|YP_003196949.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257796434|gb|ACV67371.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 208

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 16/93 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
             GCNL      +   A               +      + +   ++      +      
Sbjct: 32  TGGCNLHCPTCHNAGLA-----------WHPEEHPLVGRETVLTHLQSHRNWLDG----V 76

Query: 89  VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           V+TGGEP L   +  L +     G    ++TNG
Sbjct: 77  VITGGEPTLVPGLDQLCRDCLDCGLPCKLDTNG 109


>gi|115709894|ref|XP_783948.2| PREDICTED: similar to MGC84142 protein [Strongylocentrotus
           purpuratus]
 gi|115954658|ref|XP_001192455.1| PREDICTED: similar to MGC84142 protein [Strongylocentrotus
           purpuratus]
          Length = 669

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 13/112 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       +R + +C++C  +       K    + +++  L +     G  + R   LTG
Sbjct: 95  NYLRISLTERCNLRCQYCMPEEGVTLSPKERLLSTEEILHLAKLFVSEGVDKIR---LTG 151

Query: 93  GEPLLQVDV-PLIQALNK-RGF-EIAVETNG-TIE------PPQGIDWICVS 134
           GEPL++ D+  +I+ L +  G  +IA+ TNG T+          G+D I +S
Sbjct: 152 GEPLVRKDIVEIIEGLRELEGLKQIAMTTNGVTLAKRLPALKKAGLDLINIS 203


>gi|154488715|ref|ZP_02029564.1| hypothetical protein BIFADO_02022 [Bifidobacterium adolescentis
           L2-32]
 gi|154082852|gb|EDN81897.1| hypothetical protein BIFADO_02022 [Bifidobacterium adolescentis
           L2-32]
          Length = 280

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 40/140 (28%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G     + +   IE   
Sbjct: 58  RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYYEAMVKKIERYA 100

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG------TIEPPQGI 128
              +  G     +GGE ++Q     +  +     + G    ++T+G      T +    I
Sbjct: 101 DLFKATGGGITFSGGESMMQP--AFVSRVFHAAKQMGVHTCLDTSGFLGASYTDDMVDDI 158

Query: 129 DWICVSPKAGCDLKIKGGQE 148
           D +C+       L +K G E
Sbjct: 159 D-LCL-------LDVKSGDE 170


>gi|15925258|ref|NP_372792.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|156980583|ref|YP_001442842.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|255007046|ref|ZP_05145647.2| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|24211997|sp|Q931G4|MOAA_STAAM RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|166217891|sp|A7X5J1|MOAA_STAA1 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|14248041|dbj|BAB58430.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|156722718|dbj|BAF79135.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus Mu3]
          Length = 340

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D DFV +   K      D++A + +     G K+ R   +TGG
Sbjct: 22  DRCNFRCDYCMPKEVFGD-DFVFL--PKNELLTFDEMARIAKVYAELGVKKIR---ITGG 75

Query: 94  EPLLQVDVP-LIQALNKR-GFE-IAVETNG 120
           EPL++ D+  LI  LN+  G E I + TNG
Sbjct: 76  EPLMRRDLDVLIAKLNQIDGIEDIGLTTNG 105


>gi|325289530|ref|YP_004265711.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324964931|gb|ADY55710.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 407

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG-RYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   ++           + ++   LI +     E +    + 
Sbjct: 47  CNL-----------HCVHC---YMDSDAENDENELSTEEAKKLISDL---AEFKVPVLLF 89

Query: 91  TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           +GGEPL++ D   L      +G    + TNGT+
Sbjct: 90  SGGEPLIRPDFFELAAYAAAQGIRPTLSTNGTL 122


>gi|116694994|ref|YP_840570.1| pyrroloquinoline quinone biosynthesis protein PqqE [Ralstonia
           eutropha H16]
 gi|113529493|emb|CAJ95840.1| pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein E
           [Ralstonia eutropha H16]
          Length = 388

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R    C FC       + T     +  Q  D+  +    G  +     L+
Sbjct: 21  PLWLLAELTYRCPLHCAFCSNPVDYARHT--AELSTVQWCDVFSQARALGAVQLG---LS 75

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           GGEPLL+ D+  L++  +  GF   + T+G
Sbjct: 76  GGEPLLRKDLEVLVRHAHGLGFYTNLITSG 105


>gi|82751856|ref|YP_417597.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           RF122]
 gi|123741049|sp|Q2YYS8|MOAA_STAAB RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|82657387|emb|CAI81829.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           RF122]
          Length = 340

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D DFV +   K      D++A + +     G K+ R   +TGG
Sbjct: 22  DRCNFRCDYCMPKEVFGD-DFVFL--PKNELLTFDEMARIAKVYAELGVKKIR---ITGG 75

Query: 94  EPLLQVDVP-LIQALNKR-GFE-IAVETNG 120
           EPL++ D+  LI  LN+  G E I + TNG
Sbjct: 76  EPLMRRDLDVLIAKLNQIDGIEDIGLTTNG 105


>gi|113461290|ref|YP_719359.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus somnus
           129PT]
 gi|112823333|gb|ABI25422.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus somnus
           129PT]
          Length = 246

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G   +V+ L   +     
Sbjct: 21  IRFILFLQGC-----------LMRCKYCHNRDT----WDLHDGKEISVEDLMKEVVTYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                G     +GGE +LQ +      +A    G    ++TNG
Sbjct: 66  FMNATGGGVTASGGEAILQAEFVRDWFKACKAEGISTCLDTNG 108


>gi|119026009|ref|YP_909854.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765593|dbj|BAF39772.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 292

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 40/140 (28%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G     + +   IE   
Sbjct: 70  RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYYEAMVKKIERYA 112

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG------TIEPPQGI 128
              +  G     +GGE ++Q     +  +     + G    ++T+G      T +    I
Sbjct: 113 DLFKATGGGITFSGGESMMQP--AFVSRVFHAAKQMGVHTCLDTSGFLGASYTDDMVDDI 170

Query: 129 DWICVSPKAGCDLKIKGGQE 148
           D +C+       L +K G E
Sbjct: 171 D-LCL-------LDVKSGDE 182


>gi|47681506|gb|AAT37518.1| unknown [Prochloron didemni]
          Length = 340

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 21/96 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL----IEEQWITGEKEGRY 87
           CNL           +CR C        G  G  ++ +++  +    IE+          +
Sbjct: 2   CNL-----------RCRMC-----YEWGDNGSYFSKEKVVSIDYPVIEKVIKDLLPGKPF 45

Query: 88  CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
             L GGEPLL   +  +I+ + + G ++ + TNGT+
Sbjct: 46  FGLFGGEPLLYPHIGEVIRLIREGGCKVDIPTNGTL 81


>gi|329929025|ref|ZP_08282827.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp. HGF5]
 gi|328937014|gb|EGG33443.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp. HGF5]
          Length = 334

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C     G++     +  + +++A ++      G  + R   LTGGEPL++ 
Sbjct: 22  DRCNLRCVYC-MPEEGMEFQPHDQIMSYEEIAAIMRVLAPMGVSKVR---LTGGEPLVRK 77

Query: 100 DVP-LIQALNK-RGFE-IAVETNGTIEPPQG 127
           D+  L+  +    G + I++ TNG + P + 
Sbjct: 78  DLETLVHKIASIEGVQDISLTTNGIMLPSKA 108


>gi|302344373|ref|YP_003808902.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075]
 gi|301640986|gb|ADK86308.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075]
          Length = 394

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       +  A      T       T  G+  +D LAD                + +
Sbjct: 50  CNLRCAHCYAQAKA------TPNADELTTAEGKRLIDDLAD----------YGSPVMLFS 93

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           GGEPL + D+P L +    +G    + TNGT+
Sbjct: 94  GGEPLARPDLPELARYAVAKGMRAVISTNGTL 125


>gi|296275048|ref|ZP_06857555.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus MR1]
          Length = 340

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D DFV +   K      D++A + +     G K+ R   +TGG
Sbjct: 22  DRCNFRCDYCMPKEVFGD-DFVFL--PKNELLTFDEMARIAKVYAELGVKKIR---ITGG 75

Query: 94  EPLLQVDVP-LIQALNKR-GFE-IAVETNG 120
           EPL++ D+  LI  LN+  G E I + TNG
Sbjct: 76  EPLMRRDLDVLIAKLNQIDGIEDIGLTTNG 105


>gi|294788304|ref|ZP_06753547.1| MoaA/NifB/PqqE family protein [Simonsiella muelleri ATCC 29453]
 gi|294483735|gb|EFG31419.1| MoaA/NifB/PqqE family protein [Simonsiella muelleri ATCC 29453]
          Length = 477

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 38/121 (31%), Gaps = 26/121 (21%)

Query: 25  VFC-------RF-----SGCNLWSGREQDRLSAQCR-----------FCDTDFVGIQGTK 61
           VF        RF      GC    G   D +   C             C   F      +
Sbjct: 65  VFVKRPEMPQRFNTEMHYGCPYDCGLCPDHMQHSCLSIVEINRACNLNCPVCFASSGTHQ 124

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
              Y + ++ + + +  +  E E     L+GGEP +       L  A  +    + + TN
Sbjct: 125 TEHYPI-EIVEKMLDAIVANEGEPDVVQLSGGEPTIHPQFFDILAAARKRPIKHLMINTN 183

Query: 120 G 120
           G
Sbjct: 184 G 184


>gi|320547352|ref|ZP_08041643.1| pyruvate formate-lyase activating enzyme [Streptococcus equinus
           ATCC 9812]
 gi|320448050|gb|EFW88802.1| pyruvate formate-lyase activating enzyme [Streptococcus equinus
           ATCC 9812]
          Length = 262

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 32/123 (26%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +C++C   DT +     
Sbjct: 16  TESFGSVDGPG---------VRFVIFMQGC-----------KMRCQYCHNPDT-WALESN 54

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117
               R   D LA+ +  +   GE  G    ++GGE +LQ+D    L     + G    ++
Sbjct: 55  KSRVRTVDDVLAEALRYKHFWGENGG--ITVSGGEAMLQIDFVTALFTKAKELGIHCTLD 112

Query: 118 TNG 120
           T G
Sbjct: 113 TCG 115


>gi|313201322|ref|YP_004039980.1| coenzyme pqq biosynthesis protein e [Methylovorus sp. MP688]
 gi|312440638|gb|ADQ84744.1| coenzyme PQQ biosynthesis protein E [Methylovorus sp. MP688]
          Length = 394

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 10/92 (10%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R    C FC   TD+             +Q    + +    G  +     
Sbjct: 17  PLWLLAEVTYRCPLHCAFCYNPTDY---DKHTQNELTTEQWIQALRDARKMGALQLG--- 70

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           ++GGEPLL+ D+  +++   + G+   + T+G
Sbjct: 71  ISGGEPLLRDDIEDIVREARQLGYYSNLITSG 102


>gi|270292096|ref|ZP_06198311.1| pyruvate formate-lyase-activating enzyme [Streptococcus sp. M143]
 gi|270279624|gb|EFA25466.1| pyruvate formate-lyase-activating enzyme [Streptococcus sp. M143]
          Length = 264

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 23/100 (23%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC++           +C++C   DT +         R   D L + +  +   G
Sbjct: 33  VF--LQGCHM-----------RCQYCHNPDT-WAMETNKSRERTVDDVLTEALRYRGFWG 78

Query: 82  EKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVET 118
           +K G    ++GGE LLQ+D  LI       ++G    ++T
Sbjct: 79  DKGG--ITVSGGEALLQIDF-LIAFFTKAKEKGIHCTLDT 115


>gi|167768087|ref|ZP_02440140.1| hypothetical protein CLOSS21_02632 [Clostridium sp. SS2/1]
 gi|167710416|gb|EDS20995.1| hypothetical protein CLOSS21_02632 [Clostridium sp. SS2/1]
 gi|291561083|emb|CBL39883.1| Pyruvate-formate lyase-activating enzyme [butyrate-producing
           bacterium SSC/2]
          Length = 300

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 46/144 (31%), Gaps = 49/144 (34%)

Query: 24  AVFCRFSGCNLWSGREQDRLS--------------AQCRFC------------DTDFVGI 57
            VF    GC L      +  S              A C  C            D  +VGI
Sbjct: 24  TVF--LKGCPLRCKWCANPESQLSQVQILYDKEKCAHCGTCTHVCPNQAISMGDDSYVGI 81

Query: 58  QGTK-------------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
             +K                   G   +VD++  +  +     E+ G    ++GGE ++Q
Sbjct: 82  DPSKCAGCLQCVKNCPAKALSYEGEAKDVDEVVKVCLQDIDFYEESGGGVTISGGEGMVQ 141

Query: 99  VDV--PLIQALNKRGFEIAVETNG 120
            D    L+  L +     A+ET G
Sbjct: 142 PDFVKALLAKLKEHKIHTAIETTG 165


>gi|153940128|ref|YP_001392535.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum F str. Langeland]
 gi|152936024|gb|ABS41522.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum F str. Langeland]
 gi|295320521|gb|ADG00899.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum F str. 230613]
          Length = 300

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 43  LSAQCRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
              +C FC   T+F      +  G      ++   I +  +  E+ G     +GGEP+L 
Sbjct: 80  DEGKCNFCGKCTNFCPNNAREYVGKDLTSQEIIKEIIKDEVFYEQSGGGVTFSGGEPMLH 139

Query: 99  VDVP--LIQALNKRGFEIAVETNG 120
            D    +++    RG    ++T+G
Sbjct: 140 ADFINGILEECKVRGIHTTIDTSG 163


>gi|149069513|gb|EDM18954.1| molybdenum cofactor synthesis 1 (predicted), isoform CRA_c [Rattus
           norvegicus]
          Length = 636

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR+C  +       K      +++  L       G  + R   LT
Sbjct: 80  CNL-----------RCRYCMPEEGVSLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 125

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GGEPL++ D V ++  L++  G   I V TNG
Sbjct: 126 GGEPLIRPDVVDIVARLHQLEGLRTIGVTTNG 157


>gi|253999234|ref|YP_003051297.1| pyrroloquinoline quinone biosynthesis protein PqqE [Methylovorus
           sp. SIP3-4]
 gi|253985913|gb|ACT50770.1| coenzyme PQQ biosynthesis protein E [Methylovorus sp. SIP3-4]
          Length = 395

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 10/92 (10%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R    C FC   TD+             +Q    + +    G  +     
Sbjct: 18  PLWLLAEVTYRCPLHCAFCYNPTDY---DKHTQNELTTEQWIQALRDARKMGALQLG--- 71

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           ++GGEPLL+ D+  +++   + G+   + T+G
Sbjct: 72  ISGGEPLLRDDIEDIVREARQLGYYSNLITSG 103


>gi|218440390|ref|YP_002378719.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Cyanothece sp. PCC 7424]
 gi|218173118|gb|ACK71851.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Cyanothece sp. PCC 7424]
          Length = 339

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
                 + GGEPLL   +  ++Q L +R   + + TN  I   + +D    SP     + 
Sbjct: 72  GAPVVSIPGGEPLLHPQIDEIVQGLVQRKKFVYLCTN-AILLEKSLDKFKPSPYLTFSVH 130

Query: 143 IKGGQE 148
           + G +E
Sbjct: 131 LDGLRE 136


>gi|94499363|ref|ZP_01305901.1| Molybdenum cofactor biosynthesis enzyme [Oceanobacter sp. RED65]
 gi|94428995|gb|EAT13967.1| Molybdenum cofactor biosynthesis enzyme [Oceanobacter sp. RED65]
          Length = 330

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 13/98 (13%)

Query: 33  NLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           N       DR   +C +C   D  F+     +    + +Q+  + +     G    R   
Sbjct: 13  NYVRISVTDRCDFRCVYCMAEDMTFI----PRKDVLSFEQIELISQAFVELGVTSIR--- 65

Query: 90  LTGGEPLLQVDV-PLIQALNKR-GF-EIAVETNGTIEP 124
           LTGGEPL++ ++  L+  LN+  G  EI + TNG+  P
Sbjct: 66  LTGGEPLIRKNIVDLVAKLNQLDGLNEITMTTNGSQLP 103


>gi|219667971|ref|YP_002458406.1| molybdenum cofactor biosynthesis protein A [Desulfitobacterium
           hafniense DCB-2]
 gi|219538231|gb|ACL19970.1| molybdenum cofactor biosynthesis protein A [Desulfitobacterium
           hafniense DCB-2]
          Length = 319

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 19/96 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C  +    +       +++ +  +       G ++ R   +T
Sbjct: 20  CNL-----------RCSYCMPEGGIKKKAHKEILSLETIEQIAFSAVDLGFQKIR---IT 65

Query: 92  GGEPL----LQVDVPLIQALNKRGFE-IAVETNGTI 122
           GGEPL    +   +  I  L  RG + + + TNGT+
Sbjct: 66  GGEPLVRKGIIDVIHQIAQLKSRGLKDLGLTTNGTL 101


>gi|307354674|ref|YP_003895725.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
           DSM 11571]
 gi|307157907|gb|ADN37287.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 492

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 22/99 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL- 90
           CNL           +C+ C   +   Q       + D+   LI +    G       V+ 
Sbjct: 126 CNL-----------KCKHC---YQDAQKALPDELDTDEAKKLIRDFAAAG-----VVVIA 166

Query: 91  -TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQG 127
            +GGEPL++ D   +    ++ G  +A+ +NGT+  P+ 
Sbjct: 167 FSGGEPLMREDFFDIASYAHEEGMYVALASNGTMITPET 205


>gi|282850584|ref|ZP_06259963.1| molybdenum cofactor biosynthesis protein A [Veillonella parvula
           ATCC 17745]
 gi|282580077|gb|EFB85481.1| molybdenum cofactor biosynthesis protein A [Veillonella parvula
           ATCC 17745]
          Length = 321

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105
           C +C       + T   +  +  + + +           +   LTGGEPLL   +  L+ 
Sbjct: 24  CPYC----RPAEITPQSQTQLLSVDEWMTILGAFHHIGVKAVRLTGGEPLLYPHIEELLG 79

Query: 106 ALNKRGFE--IAVETNGTIEPPQG 127
            + + G+   I++ TNG++   + 
Sbjct: 80  RIKETGWFEDISMTTNGSLLASRA 103


>gi|158521211|ref|YP_001529081.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158510037|gb|ABW67004.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 306

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 45  AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPL 103
           + C +C          K      D++A+ I  Q+       +   L+GGEP +  D +  
Sbjct: 23  SNCVYC----CAGNRGKQRAMTFDEIAENI--QFFIDTYGVQEVCLSGGEPTVHRDFLST 76

Query: 104 IQALNKRGFEIAVETNG 120
           +  +  +G    + TNG
Sbjct: 77  LDFVRSKGLRTYLHTNG 93


>gi|108757868|ref|YP_632408.1| molybdenum cofactor biosynthesis protein MoaA [Myxococcus xanthus
           DK 1622]
 gi|108461748|gb|ABF86933.1| molybdenum cofactor biosynthesis protein MoaA [Myxococcus xanthus
           DK 1622]
          Length = 334

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 14/81 (17%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           GR   + R S          DR + +C +C         + GG+ ++    +L     + 
Sbjct: 22  GRRMTYLRLS--------ITDRCNFRCSYC------SPASWGGKRDLLGPEELERITSVF 67

Query: 81  GEKEGRYCVLTGGEPLLQVDV 101
                R   LTGGEPL++ D+
Sbjct: 68  ARMGIRRVRLTGGEPLIRPDI 88


>gi|257064493|ref|YP_003144165.1| predicted Fe-S oxidoreductase [Slackia heliotrinireducens DSM
           20476]
 gi|256792146|gb|ACV22816.1| predicted Fe-S oxidoreductase [Slackia heliotrinireducens DSM
           20476]
          Length = 356

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 45  AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPL 103
             C  C +        +G   +  +   +I++  I    +  Y  +TGGEPLL      +
Sbjct: 38  EHCWHCGS---SCTAARGDELSTQEFCSVIDQVKIDFADKLPYLCITGGEPLLRHDFFDI 94

Query: 104 IQALNKRGFEIAVETNGTIEPPQ 126
           +   ++ GF+  + +NGT+  P+
Sbjct: 95  MGHAHRLGFDWGMTSNGTLITPE 117


>gi|222055542|ref|YP_002537904.1| glycyl-radical enzyme activating protein family [Geobacter sp.
           FRC-32]
 gi|221564831|gb|ACM20803.1| glycyl-radical enzyme activating protein family [Geobacter sp.
           FRC-32]
          Length = 346

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 46/170 (27%), Gaps = 58/170 (34%)

Query: 1   MKLYSIKEI--FLTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------- 46
           M    I EI  F  LQ G G       +F    GC L      +  +             
Sbjct: 1   MPTPLITEIQRFC-LQDGPGIRT---TIF--LKGCPLHCPWCHNPENIGSKQEFYFYANR 54

Query: 47  ---CRFCDTDFVGIQG--------------------------------TKGGRYNVDQLA 71
              CR C T      G                                  G    ++ + 
Sbjct: 55  CTGCRQCQTACTSATGNMDHDCMERTTDRSLCTSCLQCVPACRFGAREAVGKSIPMENIL 114

Query: 72  DLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALN-KRGFEIAVET 118
                  I  +  G    ++GGEPLL  +    L + L  K    +A+ET
Sbjct: 115 LEAVSDRIFYQPSGGGVTISGGEPLLYPEFTCELARNLKVKENLHVAIET 164


>gi|294495916|ref|YP_003542409.1| radical SAM protein [Methanohalophilus mahii DSM 5219]
 gi|292666915|gb|ADE36764.1| Radical SAM domain protein [Methanohalophilus mahii DSM 5219]
          Length = 199

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 15/78 (19%)

Query: 72  DLIEEQWITGEKEGRYCVLTG-GEPLLQVDVPL--IQALNKRGFEIAVETNGT------- 121
           ++I E      K+ +  V TG GEP  + DV L   + L +RG  + ++TNG        
Sbjct: 54  EIITELEKYDLKKYKEIVFTGFGEPTARFDVLLAVTRWLKERGAYVRLDTNGHGQLINPD 113

Query: 122 -----IEPPQGIDWICVS 134
                +    G+D + VS
Sbjct: 114 INVVDLLVDAGLDAVSVS 131


>gi|256379378|ref|YP_003103038.1| Radical SAM domain protein [Actinosynnema mirum DSM 43827]
 gi|255923681|gb|ACU39192.1| Radical SAM domain protein [Actinosynnema mirum DSM 43827]
          Length = 327

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 13/108 (12%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           ++        + +C  C   +            +  L   +      G        ++GG
Sbjct: 9   VFQVHPTRLCTLRCLHC---YSSSGPDVAESLPIGVLGPAVRAAATLGYD---VLNVSGG 62

Query: 94  EPLLQVDV-PLIQALNKRGFEIAVETNGT------IEPPQGIDWICVS 134
           EPLL  ++  L+ A    G    V TNG       I   + +D + VS
Sbjct: 63  EPLLYPELRALVGAARDAGMRTIVTTNGLSLSPRRIALLREVDLVAVS 110


>gi|228907890|ref|ZP_04071742.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           IBL 200]
 gi|228851785|gb|EEM96587.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           IBL 200]
          Length = 333

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  F+  +         D++  L       G  + R   LTG
Sbjct: 18  DRCNFRCTYCMPAEVFGPDYPFLQEE----LLLTFDEIERLARLFISMGVNKIR---LTG 70

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           GEPLL+ D+P LI  L K  G + I + TNG
Sbjct: 71  GEPLLRKDLPMLIARLAKLEGLKDIGLTTNG 101


>gi|126667624|ref|ZP_01738593.1| hypothetical protein MELB17_00270 [Marinobacter sp. ELB17]
 gi|126627893|gb|EAZ98521.1| hypothetical protein MELB17_00270 [Marinobacter sp. ELB17]
          Length = 295

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 20/95 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C  +    Q  +    NV Q+   + +         R  +L 
Sbjct: 68  CNL-----------RCNNC--NRSSAQAPEARHINVSQIEQFVADSMAQNRHWRRIRIL- 113

Query: 92  GGEPLLQVD----VPLIQALNKRGFEIAVE--TNG 120
           GGEP L  D    + ++  L +   E A+E  TNG
Sbjct: 114 GGEPTLHPDFLRILEVLSKLKEVFPETAIEVVTNG 148


>gi|328886500|emb|CCA59739.1| putative, Molybdenum cofactor biosynthesis protein A [Streptomyces
           venezuelae ATCC 10712]
          Length = 340

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 38  CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  +++ L  +   + + TN  +   + ++    SP     + I G +E
Sbjct: 80  GGEPLMHPQIHEIVRQLVAKRKYVFLCTN-AMLLRKKLENFTPSPYFAFAVHIDGLRE 136


>gi|282917614|ref|ZP_06325366.1| LOW QUALITY PROTEIN: molybdenum cofactor biosynthesis protein A
           [Staphylococcus aureus subsp. aureus D139]
 gi|282318576|gb|EFB48934.1| LOW QUALITY PROTEIN: molybdenum cofactor biosynthesis protein A
           [Staphylococcus aureus subsp. aureus D139]
          Length = 217

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D DFV +   K      D++A + +     G K+ R   +TGG
Sbjct: 22  DRCNFRCDYCMPKEVFGD-DFVFL--PKNELLTFDEMARIAKVYAELGVKKIR---ITGG 75

Query: 94  EPLLQVDVP-LIQALNKR-GFE-IAVETNG 120
           EPL++ D+  LI  LN+  G E I + TNG
Sbjct: 76  EPLMRRDLDVLIAKLNQIDGIEDIGLTTNG 105


>gi|94986650|ref|YP_594583.1| Fe-S oxidoreductases [Lawsonia intracellularis PHE/MN1-00]
 gi|94730899|emb|CAJ54262.1| predicted Fe-S oxidoreductases [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 437

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           C L +       +  C+ C            G ++ ++   LI+     G       + T
Sbjct: 70  CKLIAWEVTRSCNLACKHC--RAEAHMDPYPGEFSTEEAKALIDTFPEVG---NPIIIFT 124

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127
           GGEP+++ DV  L+     +G    +  NGT+  P+ 
Sbjct: 125 GGEPMMRADVYELMAYATSKGLRCVMSPNGTLITPET 161


>gi|116750579|ref|YP_847266.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699643|gb|ABK18831.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 428

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 30/132 (22%)

Query: 32  CNLWSG-----REQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           CNL  G     R     +    + D               V     L++   +T  +   
Sbjct: 93  CNLKCGMCIQHRHASPAAPGLTWFD---------PERELPVSAWVRLMDR--VTTFRPAL 141

Query: 87  YCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI-------EPPQGIDWICVSPKAG 138
           Y   TGGEP+L       I+   +R   + + TNGT+          +G+  + VS    
Sbjct: 142 YV--TGGEPMLYPGFEEFIKEAGRRHLFVQLATNGTLLSGNAGMLVEEGVGIVIVS---- 195

Query: 139 CDLKIKGGQELK 150
            D   +   E++
Sbjct: 196 MDGPARVHDEVR 207


>gi|307707088|ref|ZP_07643885.1| hypothetical protein ydeM [Streptococcus mitis SK321]
 gi|307617614|gb|EFN96784.1| hypothetical protein ydeM [Streptococcus mitis SK321]
          Length = 423

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 16/96 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C  +    +      Y+  ++ + I ++    + +      T
Sbjct: 74  CNLT-----------CSYCFENDKDRKPFLSSEYDGKKIVNFILDELNFKKYKSLDICFT 122

Query: 92  GGEPL--LQVDVPLIQALNKR---GFEIAVETNGTI 122
           GGEPL   Q    L + L+++        + TNGTI
Sbjct: 123 GGEPLYNFQFIRNLCETLDEKLAIPISYTLITNGTI 158


>gi|167754739|ref|ZP_02426866.1| hypothetical protein CLORAM_00243 [Clostridium ramosum DSM 1402]
 gi|237732780|ref|ZP_04563261.1| glycyl-radical enzyme activating protein [Mollicutes bacterium D7]
 gi|167705571|gb|EDS20150.1| hypothetical protein CLORAM_00243 [Clostridium ramosum DSM 1402]
 gi|229384150|gb|EEO34241.1| glycyl-radical enzyme activating protein [Coprobacillus sp. D7]
          Length = 305

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
               Y++ QL + I+E  +    +G     +GGEPL+Q +    +++A  +     A+ET
Sbjct: 104 DSEAYDIKQLMEKIKEDRVFFRDDGG-VTFSGGEPLMQGEFLYEILKACQEEKIHTAIET 162

Query: 119 N--GTIEPPQGI 128
              G++E  + I
Sbjct: 163 TMYGSLELIKKI 174


>gi|257058597|ref|YP_003136485.1| radical SAM protein [Cyanothece sp. PCC 8802]
 gi|256588763|gb|ACU99649.1| Radical SAM domain protein [Cyanothece sp. PCC 8802]
          Length = 388

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 45  AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPL 103
           A C FC  +F          +    L   I+   I   +  RY V TGGEP L       
Sbjct: 59  ANCGFC--NFAR-DRFPQEEWQFVGLEAGIDAIDILYREGIRYLVFTGGEPTLHPHLTDF 115

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWIC 132
           I+  ++   +  V TN  I  P  I  + 
Sbjct: 116 IRYSSQLNIKCIVVTNAGILTPAKIHELT 144


>gi|255513446|gb|EET89712.1| Radical SAM domain protein [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 319

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 62/179 (34%), Gaps = 58/179 (32%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD--------- 72
             A+     GC+L            CRFC   +  I    G  +N     D         
Sbjct: 48  TPAI-----GCDL-----------GCRFC---WRLIPEEIGVNWNELNAVDKWDNPEYII 88

Query: 73  ---LIEEQWITGEK-----------------EGRYC--VLTGGEPLLQVDVP-LIQALNK 109
              +IE++ I                       ++    LTG EP     +  LI+  +K
Sbjct: 89  DNMIIEQRRIVSGYKSNADTPLRMKRWAEANNPKHVAISLTG-EPTFYPKLSKLIEGFHK 147

Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL---KLVFPQVNVSPENYIG 165
           RG    + TNGT+  P+ I+ +   P     + ++   E    K+V P++  +   Y+ 
Sbjct: 148 RGISTFLVTNGTL--PEAIERLTTLP-TQLYVSVEAPDEETYNKVVRPKIKDTWNRYLK 203


>gi|238795843|ref|ZP_04639356.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia mollaretii
           ATCC 43969]
 gi|238720306|gb|EEQ12109.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia mollaretii
           ATCC 43969]
          Length = 215

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 54/163 (33%), Gaps = 31/163 (19%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101
           +C +C   DT         G    V++L              G     +GGE +LQ +  
Sbjct: 2   RCLYCHNRDT----WDTHGGKEVTVEELVKEAVTYRHFMNASGGGVTASGGEAILQAEFV 57

Query: 102 -PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155
               +A ++ G    ++TNG +        + +D          DL +   +++     Q
Sbjct: 58  RDWFRACHEEGIHTCLDTNGFVRRYDPVIDELLD--------ATDLVMLDLKQMDDSVHQ 109

Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
             V   N+   +F R+          + N    + Y    P W
Sbjct: 110 NLVGVSNHRTLEFARY--------LAKRNQKTWVRYVVV-PGW 143


>gi|254171897|ref|ZP_04878573.1| radical SAM family protein [Thermococcus sp. AM4]
 gi|214033793|gb|EEB74619.1| radical SAM family protein [Thermococcus sp. AM4]
          Length = 333

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
           GEP+L   +  L++  +KRGF   + TNGT+ 
Sbjct: 142 GEPMLYPYMGDLVEEFHKRGFTTFIVTNGTVP 173


>gi|218294743|ref|ZP_03495597.1| molybdenum cofactor biosynthesis protein A [Thermus aquaticus
           Y51MC23]
 gi|218244651|gb|EED11175.1| molybdenum cofactor biosynthesis protein A [Thermus aquaticus
           Y51MC23]
          Length = 325

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 18/103 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C            G   V+++   +E   + G    R+   T
Sbjct: 22  CNL-----------HCLYC-HPLGLEVAEPPGTLTVEEVDHFLEAASLLGLSAVRF---T 66

Query: 92  GGEPLLQVDVP--LIQALNKRGFE-IAVETNGTIEPPQGIDWI 131
           GGEPL++ ++P  + +A  K G E +A+ TNG +   +  + +
Sbjct: 67  GGEPLVRKELPQMIAKAREKEGIEDVAITTNGLLFAKRAKELV 109


>gi|194039216|ref|XP_001928743.1| PREDICTED: molybdenum cofactor biosynthesis protein 1 [Sus scrofa]
          Length = 637

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C++C     G+  T        +++  L       G  + R   L
Sbjct: 80  CNL-----------RCQYC-MPEEGVPLTPRADLLTTEEILTLARLFVKEGVDKIR---L 124

Query: 91  TGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           TGGEPL++ D V ++  L++  G   I + TNG
Sbjct: 125 TGGEPLIRPDVVDIVARLHQLEGLRTIGITTNG 157


>gi|218245553|ref|YP_002370924.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 8801]
 gi|218166031|gb|ACK64768.1| Radical SAM domain protein [Cyanothece sp. PCC 8801]
          Length = 388

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 45  AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPL 103
           A C FC  +F          +    L   I+   I   +  RY V TGGEP L       
Sbjct: 59  ANCGFC--NFAR-DRFPQEEWQFVGLEAGIDAIDILYREGIRYLVFTGGEPTLHPHLTDF 115

Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWIC 132
           I+  ++   +  V TN  I  P  I  + 
Sbjct: 116 IRYSSQLNIKCIVVTNAGILTPAKIHELT 144


>gi|167746910|ref|ZP_02419037.1| hypothetical protein ANACAC_01622 [Anaerostipes caccae DSM 14662]
 gi|167653870|gb|EDR97999.1| hypothetical protein ANACAC_01622 [Anaerostipes caccae DSM 14662]
          Length = 304

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 9/144 (6%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVE 117
           ++G    V ++ +++ +     E+ G    L+GGE L Q +    L+ A  + G     E
Sbjct: 107 SEGETKTVQEVLNVVLQDKDFYEESGGGITLSGGEFLSQPEFAAELLLASKENGLHTCCE 166

Query: 118 TNGTIEPP------QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD-FER 170
           T G  +P       + +D+I    K     K K G  +    P  N+      G +   R
Sbjct: 167 TTGFADPEIFNGVIKHLDYILFDMKHWNTAKHKEGTGVSNDLPLFNMKHAIQAGKEVLPR 226

Query: 171 FSLQPMDGPFLEENTNLAISYCFQ 194
             + P      E+   LA +    
Sbjct: 227 IPVIPGFNDSFEDAARLADTLLKA 250


>gi|170735553|ref|YP_001774667.1| radical SAM domain-containing protein [Burkholderia cenocepacia
           MC0-3]
 gi|169821591|gb|ACA96172.1| Radical SAM domain protein [Burkholderia cenocepacia MC0-3]
          Length = 214

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 25/86 (29%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC           S +C  C   DT         GG   VD +   +   W++G    
Sbjct: 25  FQGC-----------SIRCPGCISMDT-----WANAGGETTVDAVLAQV-RNWLSGATG- 66

Query: 86  RYCVLTGGEPLLQVD--VPLIQALNK 109
               ++GGEP  Q D  + L+Q L K
Sbjct: 67  --ITISGGEPFDQPDALIHLLQGLRK 90


>gi|89896234|ref|YP_519721.1| hypothetical protein DSY3488 [Desulfitobacterium hafniense Y51]
 gi|89335682|dbj|BAE85277.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 326

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 19/96 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C  +    +       +++ +  +       G ++ R   +T
Sbjct: 27  CNL-----------RCSYCMPEGGIKKKAHKEILSLETIEQIAFSAVDLGFQKIR---IT 72

Query: 92  GGEPL----LQVDVPLIQALNKRGFE-IAVETNGTI 122
           GGEPL    +   +  I  L  RG + + + TNGT+
Sbjct: 73  GGEPLVRKGIIDVIHQIAQLKSRGLKDLGLTTNGTL 108


>gi|18978090|ref|NP_579447.1| tRNA-modifying enzyme [Pyrococcus furiosus DSM 3638]
 gi|18893883|gb|AAL81842.1| hypothetical protein PF1718 [Pyrococcus furiosus DSM 3638]
          Length = 338

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
           GEP+L   +  L++  +KRGF   + TNGT+ 
Sbjct: 147 GEPMLYPYMGDLVEEFHKRGFTTFIVTNGTVP 178


>gi|88856676|ref|ZP_01131332.1| MoaA-related protein [marine actinobacterium PHSC20C1]
 gi|88814137|gb|EAR24003.1| MoaA-related protein [marine actinobacterium PHSC20C1]
          Length = 336

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 16/89 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       R S Q             T+     VD++A L  E    G KE    +LT
Sbjct: 92  CNLACDYCCVRSSPQ-------------TERRALGVDRVAQLAAEAVEAGVKE---LILT 135

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GGEP L  D+  + A         + TNG
Sbjct: 136 GGEPFLLPDIDEVVAACATHLPTTLLTNG 164


>gi|170717241|ref|YP_001784359.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus somnus
           2336]
 gi|168825370|gb|ACA30741.1| pyruvate formate-lyase activating enzyme [Haemophilus somnus 2336]
          Length = 246

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C++C   DT         G   +V+ L   +     
Sbjct: 21  IRFILFLQGC-----------LMRCKYCHNRDT----WDLHDGKEISVEDLMKEVVTYRH 65

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                G     +GGE +LQ +      +A    G    ++TNG
Sbjct: 66  FMNATGGGVTASGGEAVLQAEFVRDWFKACKAEGISTCLDTNG 108


>gi|307721838|ref|YP_003892978.1| GTP cyclohydrolase subunit MoaA [Sulfurimonas autotrophica DSM
           16294]
 gi|306979931|gb|ADN09966.1| GTP cyclohydrolase subunit MoaA [Sulfurimonas autotrophica DSM
           16294]
          Length = 321

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 24/170 (14%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           +R + +C++C  +  F  +        + ++L + ++     G K+ R   +TGGEPLL+
Sbjct: 19  ERCNFRCQYCMPEKPFSWVPKEN--LLSFEELFEFMKVAIDEGVKKIR---ITGGEPLLR 73

Query: 99  VDVP-LIQALNK--RGFEIAVETN-----GTIEPP--QGIDWICVS---PKAGCDLKIKG 145
            D+   I+ +       ++A+ TN     GT +     G+  I VS    K      I G
Sbjct: 74  EDLDKFIKMIYDYEPSIDLAMTTNAFLLKGTAQRLKNAGLKRINVSIDTLKPEVAQAIAG 133

Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
              LK V   V  + +  +     + ++ PM     +E  +  + YC + 
Sbjct: 134 KDVLKNVLEGVEEARKVGLKV---KVNMVPMKNMNADEIVD-VLEYCKER 179


>gi|242398619|ref|YP_002994043.1| Pyruvate-formate lyase-activating enzyme [Thermococcus sibiricus MM
           739]
 gi|242265012|gb|ACS89694.1| Pyruvate-formate lyase-activating enzyme [Thermococcus sibiricus MM
           739]
          Length = 301

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
           G    V++L   IE+     +  G     +GGEPL Q    V  ++ L KR     V+T+
Sbjct: 104 GRVITVEELLTEIEKDIKLYDDSGGGVTFSGGEPLSQPKFLVESLKELKKRYIHTTVDTS 163

Query: 120 G 120
           G
Sbjct: 164 G 164


>gi|237796639|ref|YP_002864191.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum Ba4 str. 657]
 gi|229263902|gb|ACQ54935.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum Ba4 str. 657]
          Length = 300

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 43  LSAQCRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
              +C FC   T+F      +  G      ++   I +  +  E+ G     +GGEP+L 
Sbjct: 80  DEGKCNFCGKCTNFCPNNAREYVGKDLTSQEIIKEIIKDEVFYEQSGGGVTFSGGEPMLH 139

Query: 99  VDVP--LIQALNKRGFEIAVETNG 120
            D    +++    RG    ++T+G
Sbjct: 140 ADFINGILEECKVRGIHTTIDTSG 163


>gi|197118653|ref|YP_002139080.1| pyranopterin triphosphate synthase [Geobacter bemidjiensis Bem]
 gi|197088013|gb|ACH39284.1| pyranopterin triphosphate synthase [Geobacter bemidjiensis Bem]
          Length = 326

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 25/180 (13%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLT 91
           N       DR + +CR+C     G++     +  +   L  +  E    G ++ R   +T
Sbjct: 12  NYLRLSVTDRCNLRCRYC-MPEEGVEKLDHSQVLSYADLLRISTEAVAAGIEKIR---VT 67

Query: 92  GGEPLLQVDVPLIQALNKRG-----FEIAVETNGTI--EPPQGIDWICV--------SPK 136
           GGEPL++  +  I  L + G      E+ + TNG +  E  QG+    V        S K
Sbjct: 68  GGEPLVRKGI--ISFLERLGALPGLKELVLTTNGLLLKEMAQGLREAGVQRLNISLDSLK 125

Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196
                 I  G ELK V   +  + +   GF   + ++  M G   +E  +  +    + P
Sbjct: 126 PETFAAITRGGELKRVLDGLEAAEK--AGFPPHKINVVVMRGVNDDEILDF-VELTMKRP 182


>gi|159038368|ref|YP_001537621.1| radical SAM domain-containing protein [Salinispora arenicola
           CNS-205]
 gi|157917203|gb|ABV98630.1| Radical SAM domain protein [Salinispora arenicola CNS-205]
          Length = 530

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 66/198 (33%), Gaps = 40/198 (20%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA-DLIEEQWITGEKEGRYC 88
           +GCNL            C  C   F        G Y +D    + + + ++  E E    
Sbjct: 105 TGCNL-----------DCPIC---FADSGHQPDG-YTIDLAQCERMLDVFVASEGEAEVV 149

Query: 89  VLTGGEPLLQ-VDVPLIQALNKRGFE-IAVETNGTIEPPQGIDWICV----SPKAGCDLK 142
           + +GGEP +    +  + A   R    + + TNG            +     P    ++ 
Sbjct: 150 MFSGGEPTIHRQILEFVDAAQDRPIRAVNLNTNGIRLASDRAFVAALGERNRPGRAVNIY 209

Query: 143 IK------------GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAIS 190
           ++             G++L+ V  Q  +     +G      +   ++    E      IS
Sbjct: 210 LQFDGLDEQTHRKIRGRDLR-VIKQRALDNCAEVGLTVTLVAT--VERGLNEHELGAIIS 266

Query: 191 YCFQNPKWR-LSVQ--TH 205
           +   +P  R +S Q  TH
Sbjct: 267 HGLAHPAVRSVSFQPVTH 284


>gi|52548370|gb|AAU82219.1| coenzyme PQQ synthesis protein [uncultured archaeon GZfos11H11]
          Length = 317

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 17/88 (19%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY- 87
            +GC+            +CR C   F   +   G   + ++     E+  +    +    
Sbjct: 22  LTGCDF-----------RCRGC---FRPARDGGGTLLSPEETLKRAEQACLKHYGKLPTK 67

Query: 88  CVLTGGEPLLQV--DVPLIQALNKRGFE 113
            ++TGGEP L     + L++ L ++GFE
Sbjct: 68  AMITGGEPTLDKEFLLTLVKGLKEKGFE 95


>gi|317499378|ref|ZP_07957646.1| glycyl-radical enzyme activating protein family [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316893347|gb|EFV15561.1| glycyl-radical enzyme activating protein family [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 300

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 46/144 (31%), Gaps = 49/144 (34%)

Query: 24  AVFCRFSGCNLWSGREQDRLS--------------AQCRFC------------DTDFVGI 57
            VF    GC L      +  S              A C  C            D  +VGI
Sbjct: 24  TVF--LKGCPLRCKWCANPESQLSQVQILYDKEKCAHCGTCTHVCPNQAISMGDDSYVGI 81

Query: 58  QGTK-------------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
             +K                   G   +VD++  +  +     E+ G    ++GGE ++Q
Sbjct: 82  DPSKCAGCLQCVKNCPAKALSYEGEAKDVDEVVKVCLQDIDFYEESGGGVTISGGEGMVQ 141

Query: 99  VDV--PLIQALNKRGFEIAVETNG 120
            D    L+  L +     A+ET G
Sbjct: 142 PDFVKALLAKLKEHKIHTAIETTG 165


>gi|240102832|ref|YP_002959141.1| tRNA-modifying enzyme [Thermococcus gammatolerans EJ3]
 gi|239910386|gb|ACS33277.1| Radical SAM protein [Thermococcus gammatolerans EJ3]
          Length = 336

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
           GEP+L   +  L++  +KRGF   + TNGT+ 
Sbjct: 145 GEPMLYPYMGDLVEEFHKRGFTTFIVTNGTVP 176


>gi|160902962|ref|YP_001568543.1| radical SAM domain-containing protein [Petrotoga mobilis SJ95]
 gi|160360606|gb|ABX32220.1| Radical SAM domain protein [Petrotoga mobilis SJ95]
          Length = 422

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C+ C            G  N+  +  + +          +  V+T
Sbjct: 108 CNL-----------NCKHC---TASANEVFRGTLNLRDIYKIFDYFIAMNL---KIVVIT 150

Query: 92  GGEPLLQVDVPLIQALNKRGF--EIAVETNGTI 122
           GGEPL++ D P I +  ++ F  +I + TNGT+
Sbjct: 151 GGEPLIRKDFPEIISYLRKNFKGKIVIMTNGTL 183


>gi|315231780|ref|YP_004072216.1| Fe-S oxidoreductase [Thermococcus barophilus MP]
 gi|315184808|gb|ADT84993.1| Fe-S oxidoreductase [Thermococcus barophilus MP]
          Length = 326

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 70  LADLIEEQWITGEKEGRYCVLT-GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
           + D I  +     +E ++  ++  GEP L   +  L++  +KRGF   + TNGT+ 
Sbjct: 116 IKDRINVKKYEEAQEPKHAAISLSGEPTLYPYIGDLVEEFHKRGFTTFIVTNGTVP 171


>gi|229029864|ref|ZP_04185934.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1271]
 gi|228731479|gb|EEL82391.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1271]
          Length = 337

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 18/98 (18%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  +Q         D++  L       G ++ R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPD--YAFLQEEF--LLTFDEIERLARLFISMGVEKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQAL-NKRGFE-IAVETNGTIEPPQG 127
           GEPLL+ D+P LI  L    G + I + TNG     Q 
Sbjct: 75  GEPLLRKDLPQLIARLTKLEGLKDIGLTTNGVHLAKQA 112


>gi|297565177|ref|YP_003684149.1| molybdenum cofactor biosynthesis protein A [Meiothermus silvanus
           DSM 9946]
 gi|296849626|gb|ADH62641.1| molybdenum cofactor biosynthesis protein A [Meiothermus silvanus
           DSM 9946]
          Length = 324

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 33/145 (22%)

Query: 32  CNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           CNL            C +C   D      Q    G   V+ + + +    + G +  R+ 
Sbjct: 22  CNL-----------HCLYCHPLD----WEQSEPPGTLTVEDVRNFLAAMRLLGLESVRF- 65

Query: 89  VLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNGTIE-------PPQGIDWICVSPKAGC 139
             TGGEPL++ ++  +I+A  + G   IA+ TNG +           G+  I +S  A  
Sbjct: 66  --TGGEPLVRKELSQMIEAAREVGVPDIAITTNGMLFKRKAKELVGAGLGRINLSMDAVT 123

Query: 140 DLK---IKGGQELKLVFPQVNVSPE 161
                 +  G ++K V+  +  + E
Sbjct: 124 PEVFKTMTRGGDVKRVWEAIETAWE 148


>gi|237653498|ref|YP_002889812.1| pyrroloquinoline quinone biosynthesis protein PqqE [Thauera sp.
           MZ1T]
 gi|237624745|gb|ACR01435.1| coenzyme PQQ biosynthesis protein E [Thauera sp. MZ1T]
          Length = 381

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 30  SGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            G  LW   E   R   +C +C+   +  +       + ++   ++ +    G  +  + 
Sbjct: 13  QGKPLWLSLELTYRCPLKCTWCNNP-LDFEDYAAKELSTEEWKQVLRDARAIGALQLGF- 70

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
             TGGEPL + D+  L+   +  GF   + T+G
Sbjct: 71  --TGGEPLQRADLEELVAHADGLGFYTNLITSG 101


>gi|119719613|ref|YP_920108.1| radical SAM domain-containing protein [Thermofilum pendens Hrk 5]
 gi|119524733|gb|ABL78105.1| Radical SAM domain protein [Thermofilum pendens Hrk 5]
          Length = 609

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L +    +R    C +C   F   +       +++ +  ++ +  +T   +     LTGG
Sbjct: 151 LINIVLTNRCDLSCFYC--FFFASKSGYIYEPSLEHIRYMLRQARLTEPVKPPAIQLTGG 208

Query: 94  EPLLQVD-VPLIQALNKRGF-EIAVETNG 120
           EP L+ D + +I+   + GF  I + TNG
Sbjct: 209 EPTLRDDLLEIIKMAREEGFTHIQLNTNG 237


>gi|322807498|emb|CBZ05073.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum
           H04402 065]
          Length = 300

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 43  LSAQCRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
              +C FC   T+F      +  G      ++   I +  +  E+ G     +GGEP+L 
Sbjct: 80  DEGKCNFCGKCTNFCPNNAREYVGKDLTSQEIIKEIIKDEVFYEQSGGGVTFSGGEPMLH 139

Query: 99  VDVP--LIQALNKRGFEIAVETNG 120
            D    +++    RG    ++T+G
Sbjct: 140 ADFINGILEECKFRGIHTTIDTSG 163


>gi|168210897|ref|ZP_02636522.1| putative radical SAM domain protein [Clostridium perfringens B str.
           ATCC 3626]
 gi|182626733|ref|ZP_02954474.1| putative radical SAM domain protein [Clostridium perfringens D str.
           JGS1721]
 gi|182627210|ref|ZP_02954916.1| putative radical SAM domain protein [Clostridium perfringens D str.
           JGS1721]
 gi|170711047|gb|EDT23229.1| putative radical SAM domain protein [Clostridium perfringens B str.
           ATCC 3626]
 gi|177907394|gb|EDT70085.1| putative radical SAM domain protein [Clostridium perfringens D str.
           JGS1721]
 gi|177907956|gb|EDT70545.1| putative radical SAM domain protein [Clostridium perfringens D str.
           JGS1721]
          Length = 436

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 7/77 (9%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
           C +C   +     +K    +V  + ++I++      +     +L+GGEP L  ++  I  
Sbjct: 118 CLYC---YNKENISKYEIIDVKNIEEIIKQCDPKILEG---IILSGGEPFLYENIEEIFI 171

Query: 107 LNKR-GFEIAVETNGTI 122
           L K+   ++A+ +NG++
Sbjct: 172 LCKKYNLKVAMVSNGSL 188


>gi|74317041|ref|YP_314781.1| GTP cyclohydrolase subunit MoaA [Thiobacillus denitrificans ATCC
           25259]
 gi|74056536|gb|AAZ96976.1| Elongator protein 3/MiaB/NifB [Thiobacillus denitrificans ATCC
           25259]
          Length = 327

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
            R S          DR   +C +C    F G +       + D++  L+      G +  
Sbjct: 17  VRLS--------VTDRCDLRCSYCMPEGFKGFE-EPADWLDFDEIERLLGAFARLGVRRV 67

Query: 86  RYCVLTGGEPLLQVDV 101
           R   LTGGEPLL+ D+
Sbjct: 68  R---LTGGEPLLRRDI 80


>gi|220931286|ref|YP_002508194.1| Radical SAM domain protein [Halothermothrix orenii H 168]
 gi|219992596|gb|ACL69199.1| Radical SAM domain protein [Halothermothrix orenii H 168]
          Length = 450

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 25/94 (26%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C          +  KG   + D +  +I E    G     + VL+
Sbjct: 122 CNLSC--------EGCW-------AGKYEKGNSLDFDTIDRIINEAKELGIY---FIVLS 163

Query: 92  GGEPLLQVDVPLIQALNKR---GFEIAVETNGTI 122
           GGEP +     L     K    GF +   TNGT+
Sbjct: 164 GGEPTVYPH--LFDIFEKHQDVGFMMY--TNGTL 193


>gi|307594547|ref|YP_003900864.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM
           14429]
 gi|307549748|gb|ADN49813.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 503

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 18/91 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C      +            +++   +++E    G        L+
Sbjct: 146 CNLKC--------MHC------YQNAGRPLPNELALEEKLRVVKELDEAGVPA---IALS 188

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
           GGEP +  D  P++  +N+RGF  A+ TNGT
Sbjct: 189 GGEPTVHRDFWPVLAEINRRGFYSAIATNGT 219


>gi|193216143|ref|YP_001997342.1| radical SAM domain-containing protein [Chloroherpeton thalassium
           ATCC 35110]
 gi|193089620|gb|ACF14895.1| Radical SAM domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 353

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C     G    K  R    ++A+       +  K   +  LT
Sbjct: 20  CNLT-----------CAYC--YERGDAKYKSRRPMSLEIAEKALRLAASSGK-AFHVQLT 65

Query: 92  GGEPLLQVDVPL-----IQALNKRGFEIAVETNGTI 122
           GGEP L+ D+ L      +A++     I+++TNGT+
Sbjct: 66  GGEPTLEQDLVLEIIKKTRAVSPES-TISLQTNGTL 100


>gi|147678958|ref|YP_001213173.1| molybdenum cofactor biosynthesis enzyme [Pelotomaculum
           thermopropionicum SI]
 gi|189028691|sp|A5CYZ0|MOAA_PELTS RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|146275055|dbj|BAF60804.1| molybdenum cofactor biosynthesis enzyme [Pelotomaculum
           thermopropionicum SI]
          Length = 325

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 12/101 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           N       DR + +C +C     G++    G    ++++  ++    +TG K+ R   LT
Sbjct: 10  NYLRISVTDRCNLRCVYC-MPEEGVRSLPHGEILRLEEIETVVRAAALTGVKKIR---LT 65

Query: 92  GGEPLLQV-DVPLIQALNKRGFE----IAVETNGTIEPPQG 127
           GGEPL++     L++ +   G      IA+ TNG + P + 
Sbjct: 66  GGEPLVRKGLEELVRRV--SGIPGIDDIALTTNGLLLPSRA 104


>gi|220932446|ref|YP_002509354.1| Radical SAM domain protein [Halothermothrix orenii H 168]
 gi|219993756|gb|ACL70359.1| Radical SAM domain protein [Halothermothrix orenii H 168]
          Length = 462

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 29/111 (26%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C   + G + +K  R   + +  +I E    G     + VL+
Sbjct: 122 CNL-----------NCTGC---WAG-KYSKSDRLEFEVIDRIITEAKELGIY---FIVLS 163

Query: 92  GGEPLLQVDVPLIQALNKR---GFEIAVETNGTIEPPQGIDWIC----VSP 135
           GGEP L     L     K    GF +   TNGT+   +  D +     VSP
Sbjct: 164 GGEPTLYPR--LFDIFEKHQDVGFLMY--TNGTLIDEEMADRMVEVGNVSP 210


>gi|329911258|ref|ZP_08275466.1| Coenzyme PQQ synthesis protein E [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545979|gb|EGF31067.1| Coenzyme PQQ synthesis protein E [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 375

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
             W   E   R    C FC   +  +   +        +   +++E    G  +  +   
Sbjct: 8   PYWLLAELTYRCPLHCAFC---YNPVNYESVRNELTTAEWFKVMQEARALGAVQLGF--- 61

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           +GGEPLL+ D+  L+   ++ GF   + T+G
Sbjct: 62  SGGEPLLRDDLEALVTEAHRLGFYTNLITSG 92


>gi|288930424|ref|YP_003434484.1| radical SAM protein [Ferroglobus placidus DSM 10642]
 gi|288892672|gb|ADC64209.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642]
          Length = 317

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 25/114 (21%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI--------EEQWITGE 82
           GCNL            C++C    +  + ++  +   + + D++        +      +
Sbjct: 56  GCNL-----------NCKYCWGWKIRFENSEVRKMPEEVVKDVLCQIERVSHDRLVKKRK 104

Query: 83  KEGRYCVLTGGEPLLQVD--VPLIQAL----NKRGFEIAVETNGTIEPPQGIDW 130
                   TG EP LQ D  + +++ L         ++ +ETNG +     I++
Sbjct: 105 YRVGVVRFTGNEPTLQWDHILEVLKLLDKSDEAEKLKVIIETNGILAGMGKINF 158


>gi|315230320|ref|YP_004070756.1| radical SAM domain-containing protein [Thermococcus barophilus MP]
 gi|315183348|gb|ADT83533.1| radical SAM domain protein [Thermococcus barophilus MP]
          Length = 188

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI- 122
            +++++  +++E  +     G      GGEP +  ++ PLI+ L K G  + + TNG + 
Sbjct: 1   MSIEEVVRILKENGVKLAFFG------GGEPTIDRELKPLIKQLKKEGISVWLITNGELL 54

Query: 123 --EPPQGIDWICVSPKAGCDLKIKG 145
             E  + +  +  S KA  D   K 
Sbjct: 55  DKELVELVKGVTFSIKAFDDELHKR 79


>gi|260891246|ref|ZP_05902509.1| pyruvate formate-lyase-activating enzyme [Leptotrichia hofstadii
           F0254]
 gi|260859273|gb|EEX73773.1| pyruvate formate-lyase-activating enzyme [Leptotrichia hofstadii
           F0254]
          Length = 272

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 23/113 (20%)

Query: 29  FSGCNLWSGREQDRLSAQ-------------------CRFCDTDFVGIQGTKGGRYNVDQ 69
           F GC L      +  + +                   C  C                +++
Sbjct: 25  FKGCPLRCLWCSNPETQKLENEFWDYDGSLYKGNKNQCSGC--PAANSLKQVAKDMTLEE 82

Query: 70  LADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
           + +++ +        G    L+GGE L+     + L + L +     A+ET G
Sbjct: 83  VFEIVMKDENFYRNSGGGVTLSGGEILVNSAFAIELFEKLKEEYINTAIETTG 135


>gi|23014386|ref|ZP_00054205.1| COG0535: Predicted Fe-S oxidoreductases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 449

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 16/98 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +     +    +    +  D + + +  +      +  + +  
Sbjct: 176 CNLRCTM--------CGW----EIWKDNSG---FMEDAVFERVIAEGKASGIKTMHILAG 220

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGI 128
            GEP L   V  +++     GF++ + TNGT   P  I
Sbjct: 221 QGEPFLHPRVFEMLEHAVAEGFQVGIVTNGTPFTPDKI 258


>gi|299143706|ref|ZP_07036786.1| molybdenum cofactor biosynthesis protein A [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298518191|gb|EFI41930.1| molybdenum cofactor biosynthesis protein A [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 311

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 22/127 (17%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLI 104
           +C +C   +      K     ++Q+  +I+   ++ +   +    TGGEPLL+   +PL 
Sbjct: 23  RCIYC-MPY-NQSFDKVNLIPMEQIEQIIK---VSAQNGIKKIRFTGGEPLLREGLLPLC 77

Query: 105 QAL-NKRGF-EIAVETNGTIEPPQGIDWI------------CVSPKAGCDLKIKGGQELK 150
             + NK G  EI + TNG+       D               +  K   D  I  G +LK
Sbjct: 78  HKISNKIGIDEICLTTNGSFLKDMAKDLKKVNVKRINLSLDTLDSKKFSD--ITRGGKLK 135

Query: 151 LVFPQVN 157
                ++
Sbjct: 136 STLEGLD 142


>gi|91202286|emb|CAJ75346.1| similar to iron sulfur [Fe-S] heme biosynthesis protein nirJ
           [Candidatus Kuenenia stuttgartiensis]
          Length = 406

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 20/95 (21%)

Query: 31  GCNLWSGREQDRLSAQCRFCD--TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           GCNL            CR  D  T       +    +   +  D I E            
Sbjct: 66  GCNLEC--------IHCRRLDVSTTLAKDDMSTKEAF---EFVDAIVEVG------NPIL 108

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           VL+GGEPL + D+  + +    +G  +A+ TNGT+
Sbjct: 109 VLSGGEPLFRPDIFDIAKHAVSKGLSVALATNGTL 143


>gi|223042523|ref|ZP_03612572.1| molybdenum cofactor biosynthesis protein A [Staphylococcus capitis
           SK14]
 gi|222444186|gb|EEE50282.1| molybdenum cofactor biosynthesis protein A [Staphylococcus capitis
           SK14]
          Length = 341

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 12/98 (12%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
            R S          DR + +C +C   +  G       +  +    ++     I  E   
Sbjct: 17  IRLS--------VTDRCNFRCDYCMPKEIFGDDFVFLPKEELLTFEEMTRISRIYAELGV 68

Query: 86  RYCVLTGGEPLLQVDV-PLIQALNK-RGFE-IAVETNG 120
           +   +TGGEPLL+ ++  LI+ LN+  G E I + TNG
Sbjct: 69  KKIRITGGEPLLRRNLYQLIEQLNEIEGIEDIGLTTNG 106


>gi|53716136|ref|YP_106486.1| radical SAM domain-containing protein [Burkholderia mallei ATCC
           23344]
 gi|53723185|ref|YP_112170.1| MoaA/NifB/PqqE family protein [Burkholderia pseudomallei K96243]
 gi|121597095|ref|YP_990580.1| radical SAM domain-containing protein [Burkholderia mallei SAVP1]
 gi|124381469|ref|YP_001025070.1| radical SAM domain-containing protein [Burkholderia mallei NCTC
           10229]
 gi|126442706|ref|YP_001064046.1| radical SAM domain-containing protein [Burkholderia pseudomallei
           668]
 gi|126446642|ref|YP_001079414.1| radical SAM domain-containing protein [Burkholderia mallei NCTC
           10247]
 gi|126457567|ref|YP_001076959.1| radical SAM domain-containing protein [Burkholderia pseudomallei
           1106a]
 gi|167004131|ref|ZP_02269901.1| radical SAM domain protein [Burkholderia mallei PRL-20]
 gi|167725215|ref|ZP_02408451.1| radical SAM domain protein [Burkholderia pseudomallei DM98]
 gi|167744145|ref|ZP_02416919.1| radical SAM domain protein [Burkholderia pseudomallei 14]
 gi|167821343|ref|ZP_02453023.1| radical SAM domain protein [Burkholderia pseudomallei 91]
 gi|167829683|ref|ZP_02461154.1| radical SAM domain protein [Burkholderia pseudomallei 9]
 gi|167851154|ref|ZP_02476662.1| radical SAM domain protein [Burkholderia pseudomallei B7210]
 gi|167899785|ref|ZP_02487186.1| radical SAM domain protein [Burkholderia pseudomallei 7894]
 gi|167916447|ref|ZP_02503538.1| radical SAM domain protein [Burkholderia pseudomallei 112]
 gi|167924302|ref|ZP_02511393.1| radical SAM domain protein [Burkholderia pseudomallei BCC215]
 gi|217424165|ref|ZP_03455664.1| radical SAM domain protein [Burkholderia pseudomallei 576]
 gi|226194079|ref|ZP_03789680.1| radical SAM domain protein [Burkholderia pseudomallei Pakistan 9]
 gi|237510356|ref|ZP_04523071.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Burkholderia pseudomallei MSHR346]
 gi|238563776|ref|ZP_04610730.1| radical SAM domain protein [Burkholderia mallei GB8 horse 4]
 gi|242311528|ref|ZP_04810545.1| radical SAM domain protein [Burkholderia pseudomallei 1106b]
 gi|254176119|ref|ZP_04882777.1| radical SAM domain protein [Burkholderia mallei ATCC 10399]
 gi|254182611|ref|ZP_04889205.1| radical SAM domain protein [Burkholderia pseudomallei 1655]
 gi|254187163|ref|ZP_04893678.1| radical SAM domain protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254203496|ref|ZP_04909857.1| radical SAM domain protein [Burkholderia mallei FMH]
 gi|254205372|ref|ZP_04911725.1| radical SAM domain protein [Burkholderia mallei JHU]
 gi|254265363|ref|ZP_04956228.1| radical SAM domain protein [Burkholderia pseudomallei 1710a]
 gi|254296457|ref|ZP_04963913.1| radical SAM domain protein [Burkholderia pseudomallei 406e]
 gi|254356179|ref|ZP_04972456.1| radical SAM domain protein [Burkholderia mallei 2002721280]
 gi|52213599|emb|CAH39653.1| MoaA/NifB/PqqE family protein [Burkholderia pseudomallei K96243]
 gi|52422106|gb|AAU45676.1| radical SAM domain protein [Burkholderia mallei ATCC 23344]
 gi|121224893|gb|ABM48424.1| radical SAM domain protein [Burkholderia mallei SAVP1]
 gi|126222197|gb|ABN85702.1| radical SAM domain protein [Burkholderia pseudomallei 668]
 gi|126231335|gb|ABN94748.1| radical SAM domain protein [Burkholderia pseudomallei 1106a]
 gi|126239496|gb|ABO02608.1| radical SAM domain protein [Burkholderia mallei NCTC 10247]
 gi|147745735|gb|EDK52814.1| radical SAM domain protein [Burkholderia mallei FMH]
 gi|147754958|gb|EDK62022.1| radical SAM domain protein [Burkholderia mallei JHU]
 gi|148025162|gb|EDK83331.1| radical SAM domain protein [Burkholderia mallei 2002721280]
 gi|157806428|gb|EDO83598.1| radical SAM domain protein [Burkholderia pseudomallei 406e]
 gi|157934846|gb|EDO90516.1| radical SAM domain protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|160697161|gb|EDP87131.1| radical SAM domain protein [Burkholderia mallei ATCC 10399]
 gi|184213146|gb|EDU10189.1| radical SAM domain protein [Burkholderia pseudomallei 1655]
 gi|217392630|gb|EEC32653.1| radical SAM domain protein [Burkholderia pseudomallei 576]
 gi|225934024|gb|EEH30010.1| radical SAM domain protein [Burkholderia pseudomallei Pakistan 9]
 gi|235002561|gb|EEP51985.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Burkholderia pseudomallei MSHR346]
 gi|238519989|gb|EEP83453.1| radical SAM domain protein [Burkholderia mallei GB8 horse 4]
 gi|242134767|gb|EES21170.1| radical SAM domain protein [Burkholderia pseudomallei 1106b]
 gi|243060461|gb|EES42647.1| radical SAM domain protein [Burkholderia mallei PRL-20]
 gi|254216365|gb|EET05750.1| radical SAM domain protein [Burkholderia pseudomallei 1710a]
 gi|261826331|gb|ABN00507.2| radical SAM domain protein [Burkholderia mallei NCTC 10229]
          Length = 386

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 22/120 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +V++    ++E             +
Sbjct: 38  CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
            GGEPLL  ++P +++ + KR   + + TN  +   + +D    SP     + + G +E+
Sbjct: 79  AGGEPLLHKEMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYAPSPYFVWSVHLDGDREM 137


>gi|332157942|ref|YP_004423221.1| tRNA-modifying enzyme [Pyrococcus sp. NA2]
 gi|331033405|gb|AEC51217.1| tRNA-modifying enzyme [Pyrococcus sp. NA2]
          Length = 339

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 74  IEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
            EE W   E       L+G EP+L   +  L++  +KRGF   + TNGT+ 
Sbjct: 133 FEEAW---EPRHAAISLSG-EPMLYPYMGDLVEEFHKRGFTTFIVTNGTVP 179


>gi|210630155|ref|ZP_03296270.1| hypothetical protein COLSTE_00154 [Collinsella stercoris DSM 13279]
 gi|210160628|gb|EEA91599.1| hypothetical protein COLSTE_00154 [Collinsella stercoris DSM 13279]
          Length = 342

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNK-RGFE-IAVE 117
            G     +++A  +      G    R   LTGGEPL+    VPLI+ +    G E I++ 
Sbjct: 11  HGELLTAEEIAHFVRLVAKEGITRVR---LTGGEPLVSHRIVPLIEEIRAIPGIEDISLT 67

Query: 118 TNGTIEP 124
           TNG + P
Sbjct: 68  TNGALLP 74


>gi|167908101|ref|ZP_02495306.1| radical SAM domain protein [Burkholderia pseudomallei NCTC 13177]
          Length = 387

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 22/120 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +V++    ++E             +
Sbjct: 38  CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
            GGEPLL  ++P +++ + KR   + + TN  +   + +D    SP     + + G +E+
Sbjct: 79  AGGEPLLHKEMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYAPSPYFVWSVHLDGDREM 137


>gi|297584204|ref|YP_003699984.1| molybdenum cofactor biosynthesis protein A [Bacillus
           selenitireducens MLS10]
 gi|297142661|gb|ADH99418.1| molybdenum cofactor biosynthesis protein A [Bacillus
           selenitireducens MLS10]
          Length = 339

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 20/123 (16%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           D+ + +C +C      D  F  +   K    + +++  L     +  E   R   +TGGE
Sbjct: 22  DKCNFRCSYCMPPEIFDKYFKFL--PKDEILSFEEITRL--STIMVKEAGIRKLRVTGGE 77

Query: 95  PLL-QVDVPLIQALNK-RGF-EIAVETNGTIEP-------PQGIDWICVSPKAGCDLKIK 144
           PL+      LI  LNK  G  +IA+ TNG++ P         G++ + +S  +  D K +
Sbjct: 78  PLMRHEVSKLIAMLNKIEGVDDIAMTTNGSLLPKHAKALKEAGLNRVTISLDSLNDEKFR 137

Query: 145 GGQ 147
              
Sbjct: 138 KIN 140


>gi|76817760|ref|YP_336444.1| radical SAM domain-containing protein [Burkholderia pseudomallei
           1710b]
 gi|76582233|gb|ABA51707.1| radical SAM domain protein [Burkholderia pseudomallei 1710b]
          Length = 371

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 22/120 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +V++    ++E             +
Sbjct: 23  CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 63

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
            GGEPLL  ++P +++ + KR   + + TN  +   + +D    SP     + + G +E+
Sbjct: 64  AGGEPLLHKEMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYAPSPYFVWSVHLDGDREM 122


>gi|169828828|ref|YP_001698986.1| hypothetical protein Bsph_3362 [Lysinibacillus sphaericus C3-41]
 gi|168993316|gb|ACA40856.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 370

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D +   ++E         +   +TGGEP++        
Sbjct: 42  RCAHCAVGYT-LQNKDPEALPIDLILQRLDEI-----PHLKTLSITGGEPMMSKKSVQSY 95

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
            +PL++  ++RG    + +N T+EP
Sbjct: 96  VLPLLKYAHERGVRTQINSNLTLEP 120


>gi|168700072|ref|ZP_02732349.1| molybdenum cofactor biosynthesis protein A [Gemmata obscuriglobus
           UQM 2246]
          Length = 337

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 15/87 (17%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL---- 96
           DR + +C +C          +      +++   +      G  + R   LTGGEPL    
Sbjct: 30  DRCNLRCTYC-MPENVTFQDRSELLTFEEIVAFVRVAVPLGVNKVR---LTGGEPLMRKE 85

Query: 97  LQVDVPLIQA---LNKRGFEIAVETNG 120
           L   V L+ A   L   G      TNG
Sbjct: 86  LHKLVRLLTAVPGLTDIGLT----TNG 108


>gi|134281782|ref|ZP_01768489.1| radical SAM domain protein [Burkholderia pseudomallei 305]
 gi|254192549|ref|ZP_04898988.1| radical SAM domain protein [Burkholderia pseudomallei S13]
 gi|134246844|gb|EBA46931.1| radical SAM domain protein [Burkholderia pseudomallei 305]
 gi|169649307|gb|EDS82000.1| radical SAM domain protein [Burkholderia pseudomallei S13]
          Length = 386

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 22/120 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +V++    ++E             +
Sbjct: 38  CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
            GGEPLL  ++P +++ + KR   + + TN  +   + +D    SP     + + G +E+
Sbjct: 79  AGGEPLLHKEMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYAPSPYFVWSVHLDGDREM 137


>gi|332110913|gb|EGJ11090.1| molybdenum cofactor biosynthesis protein A [Rubrivivax
           benzoatilyticus JA2]
          Length = 372

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 25/136 (18%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D  +  +        + +++  +       G ++ R   LTGGE
Sbjct: 48  DRCNFRCGYCMPSEVFDRRYRFL--PHDALLSFEEITRVASVFLAHGVRKLR---LTGGE 102

Query: 95  PLLQVDVP-LIQALNKR------GFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+  +P L++ L           E+ + TNG++           G+  + VS  A  D
Sbjct: 103 PLLRKQLPSLVEQLAALRTVDGTPPELTLTTNGSLLARLARPLREAGLTRVTVSLDALDD 162

Query: 141 LKIKGGQELKLVFPQV 156
              +   ++      V
Sbjct: 163 TVFRRMNDVDFPVADV 178


>gi|282165499|ref|YP_003357884.1| putative anaerobic ribonucleoside-triphosphate reductase-activating
           protein [Methanocella paludicola SANAE]
 gi|282157813|dbj|BAI62901.1| putative anaerobic ribonucleoside-triphosphate reductase-activating
           protein [Methanocella paludicola SANAE]
          Length = 255

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 19/96 (19%)

Query: 31  GCNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           GC L           +C +C  + F+ +              + +  + +   +     +
Sbjct: 28  GCPL-----------KCPYCSNSRFIEVPEDIQASDT-----ETVNARVLEASRFVDGVI 71

Query: 90  LTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
            +GGEP +Q      + + +   G  + V TNG   
Sbjct: 72  FSGGEPFMQPAALREMAEYVKGLGLLVGVHTNGAYP 107


>gi|227496402|ref|ZP_03926690.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Actinomyces urogenitalis DSM 15434]
 gi|226834087|gb|EEH66470.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Actinomyces urogenitalis DSM 15434]
          Length = 270

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 37/127 (29%), Gaps = 32/127 (25%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
              VF    GC              C +C   D   V   GT             + E  
Sbjct: 57  TATVF--TQGCP-----------WNCFYCHNRDLIPVRTPGTVAWSQ--------VRELL 95

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQG-------IDW 130
                     VLTGGE L Q  +      + + GF + + T G              +DW
Sbjct: 96  GRRRGLLDGVVLTGGEALRQDALADAAAEVRELGFAVGLHTAGAYPRRLADLLEAGLVDW 155

Query: 131 ICVSPKA 137
           + +  KA
Sbjct: 156 VGLDVKA 162


>gi|117924796|ref|YP_865413.1| GTP cyclohydrolase subunit MoaA [Magnetococcus sp. MC-1]
 gi|167011814|sp|A0L7R4|MOAA_MAGSM RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|117608552|gb|ABK44007.1| GTP cyclohydrolase subunit MoaA [Magnetococcus sp. MC-1]
          Length = 326

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 9/83 (10%)

Query: 46  QCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-L 103
           +C +C       +     ++ +  +L+ L+      G    R   LTGGEPL++ D+  L
Sbjct: 25  RCNYC--RVPEQESQLREQWLSFAELSRLLARFAQLGIGRFR---LTGGEPLVRKDLAQL 79

Query: 104 IQALNK-RGF-EIAVETNGTIEP 124
           +  L++  G  EI++ TNG + P
Sbjct: 80  VAGLHQLAGVEEISLSTNGLLLP 102


>gi|332036928|gb|EGI73388.1| molybdenum cofactor biosynthesis protein A [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 323

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 22/107 (20%)

Query: 33  NLWSGREQDRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           N       D  +  C +C       DT             N ++++ L+      G K+ 
Sbjct: 11  NYLRLSITDVCNFSCSYCLPNGYQCDTPRNF--------LNKNEISTLVNAFAQLGTKKV 62

Query: 86  RYCVLTGGEPLLQVDVPLIQALNKR--GFE-IAVETNGTIEPPQGID 129
           R   +TGGEP L+ DV  I  L K   G E +A+ TNG     + ID
Sbjct: 63  R---ITGGEPCLRNDVTDIIKLCKNTPGIEKVAITTNG-FNLLKKID 105


>gi|126466217|ref|YP_001041326.1| radical SAM domain-containing protein [Staphylothermus marinus F1]
 gi|126015040|gb|ABN70418.1| Radical SAM domain protein [Staphylothermus marinus F1]
          Length = 347

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY--NVDQLADLIEEQWITGEKEGRYCVL 90
           N+   R        C FC  D       +   +  + D + +   E            + 
Sbjct: 38  NVLQVRPTTLCPLNCIFCSVDAGPHSRNRRAEFIVDPDSIYEATIEIARFKGGGVEALID 97

Query: 91  TGGEPLLQV-DVPLIQALNKRGF--EIAVETNGTIEPPQGID 129
           T G+PL       L++ L +  +   IA+ET+G +   + ID
Sbjct: 98  TVGDPLTYPYLTYLVKKLKRSPYISSIALETHGALLSHRLID 139


>gi|221133421|ref|ZP_03559726.1| pyrroloquinoline quinone biosynthesis protein PqqE [Glaciecola sp.
           HTCC2999]
          Length = 377

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 20/169 (11%)

Query: 33  NLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E        C +C       +  +    + +    ++ E    G  +  +   +
Sbjct: 14  PLWLLAELTYDCPLHCPYCSNPVQMTE--RKDECDTETWKKVLSEAREMGAVQLGF---S 68

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
           GGEPLL+ D+  L+   ++ GF   + T+G          I ++ K    LK  G   ++
Sbjct: 69  GGEPLLRKDLEVLVAHASELGFYTNLITSG----------IGLTEKRIKGLKEAGLDHIQ 118

Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFL--EENTNLAISYCFQNPK 197
           L F   N    + IG +      Q +    L  + +  + +++C     
Sbjct: 119 LSFQAANADENDLIG-NKRHSFEQKLAVAKLVKQYDYPMVLNFCLTRQN 166


>gi|78357617|ref|YP_389066.1| Elongator protein 3/MiaB/NifB [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220022|gb|ABB39371.1| Elongator protein 3/MiaB/NifB [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 394

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            +       R + +C  C   +   +        + +Q  ++I +     +      + +
Sbjct: 40  PVVVWNMTRRCNLKCVHC---YAQAVDPEGNDEISTEQGKEIIRDL---AQYGAPVMLFS 93

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPL++ D+  L +   ++G    + TNGT+
Sbjct: 94  GGEPLVRKDLVELAKFATEQGMRAVISTNGTL 125


>gi|14520684|ref|NP_126159.1| tRNA-modifying enzyme [Pyrococcus abyssi GE5]
 gi|5457900|emb|CAB49390.1| Radical SAM family protein [Pyrococcus abyssi GE5]
          Length = 342

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
           GEP+L   +  L++  +KRGF   + TNGT+ 
Sbjct: 151 GEPMLYPYMGDLVEEFHKRGFTTFIVTNGTVP 182


>gi|87307927|ref|ZP_01090070.1| MoaA/NifB/PqqE family protein [Blastopirellula marina DSM 3645]
 gi|87289541|gb|EAQ81432.1| MoaA/NifB/PqqE family protein [Blastopirellula marina DSM 3645]
          Length = 490

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 15/103 (14%)

Query: 31  GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC L  G   +     C             C   + G  G  G   +V Q    I+   +
Sbjct: 72  GCPLDCGLCTEHEQHSCIGLLEITSSCNLECPMCYAGS-GPGGKHLSVAQCQAAIDRL-V 129

Query: 80  TGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG 120
             E       L+GGEP +  D    L  AL++    + + TNG
Sbjct: 130 EVEGRPEVLQLSGGEPTIHPDFETILAYALSQPIDYVMINTNG 172


>gi|225593178|gb|ACN96095.1| Fe-S protein, radical SAM family [Fischerella sp. MV11]
          Length = 476

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 22/111 (19%)

Query: 31  GCNLWSGREQDRLSAQCR----------------FCDT---DFVGIQGTKGGRYNVDQLA 71
           GC    G   D     C                 + D+   +F  +        ++ ++A
Sbjct: 80  GCPYDCGLCPDHEQHSCLTLIEVTDRCNLSCPICYADSGAEEFSQVSHQPRRHRSLAEIA 139

Query: 72  DLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETNG 120
            +I+   +T E E +   L+GGEP +  +   ++     +    + + TNG
Sbjct: 140 SMIDAV-VTNEGEPQIVQLSGGEPTIHPEFFEIMDLAKSKPIKHLMINTNG 189


>gi|238760074|ref|ZP_04621224.1| pyruvate formate-lyase 3-activating enzyme [Yersinia aldovae ATCC
           35236]
 gi|238701693|gb|EEP94260.1| pyruvate formate-lyase 3-activating enzyme [Yersinia aldovae ATCC
           35236]
          Length = 299

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 88  CVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
             L+GGEP +Q D+   L+Q  ++ G   AVE+
Sbjct: 127 VTLSGGEPFMQPDIAAELLQRCHRLGIHTAVES 159


>gi|261339237|ref|ZP_05967095.1| hypothetical protein ENTCAN_05472 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319093|gb|EFC58031.1| pyruvate formate-lyase 1-activating enzyme [Enterobacter
           cancerogenus ATCC 35316]
          Length = 246

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K G    ++TNG
Sbjct: 72  GGVTASGGEAILQAEFVRDWFRACRKEGIHTCLDTNG 108


>gi|171058132|ref|YP_001790481.1| radical SAM domain-containing protein [Leptothrix cholodnii SP-6]
 gi|170775577|gb|ACB33716.1| Radical SAM domain protein [Leptothrix cholodnii SP-6]
          Length = 418

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 16/112 (14%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            +       R +  C+ C   +         G  +  ++  ++++            +L+
Sbjct: 35  PVVIWNLIRRCNLTCQHC---YALSADHEYSGELSGAEVGTVMDDLKA---FHVPVLILS 88

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI--------EPPQGIDWICVS 134
           GGEPL++ D+  +        F I + TNGT+            G D++ +S
Sbjct: 89  GGEPLMRPDIFEIAARAKAMRFYIGLSTNGTLIDEPMADRVAAAGFDYVGIS 140


>gi|326402367|ref|YP_004282448.1| hypothetical protein ACMV_02190 [Acidiphilium multivorum AIU301]
 gi|325049228|dbj|BAJ79566.1| hypothetical protein ACMV_02190 [Acidiphilium multivorum AIU301]
          Length = 579

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 14/89 (15%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         S +      D +      G R  +D+ A+   E    G        LT
Sbjct: 309 CNLACEGCYIESSPRN-----DRLAWLRLDGFRRVLDEAANRHPELREIG--------LT 355

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETN 119
           GGEP +  D+  LI     RG+ + V TN
Sbjct: 356 GGEPFMNPDIEALIGMALDRGYRVLVLTN 384


>gi|238922271|ref|YP_002935785.1| pyruvate formate lyase activating enzyme [Eubacterium eligens ATCC
           27750]
 gi|238873943|gb|ACR73651.1| pyruvate formate lyase activating enzyme [Eubacterium eligens ATCC
           27750]
          Length = 259

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 22/117 (18%)

Query: 7   KEIFLTLQGEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
            E F ++ G G  +     VF    GC++           +CR+C       +   G   
Sbjct: 18  VESFGSVDGPGVRYI----VF--LKGCHM-----------RCRYCHNPETWKE-EGGTLE 59

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
              ++ D     +    K G    ++GGE LLQ+     L +   K G    ++T+G
Sbjct: 60  TAQEVFDKAYR-YRNYWKNGGGITVSGGEALLQMGFVTELFEIAKKNGVHTTLDTSG 115


>gi|326797578|ref|YP_004315397.1| molybdenum cofactor biosynthesis protein A [Sphingobacterium sp.
           21]
 gi|326548342|gb|ADZ76727.1| molybdenum cofactor biosynthesis protein A [Sphingobacterium sp.
           21]
          Length = 329

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 33  NLWSGREQDRLSAQCRFC--DTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCV 89
           N       D  + +C +C  +  +      K    + +DQLA +  +  +T  +      
Sbjct: 14  NYLRISLTDNCNLRCFYCMPEEHYAFTPHAKLMQVHEIDQLAKIFVDHGVTKIR------ 67

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           LTGGEPL++ D P +I+ L+K   E+ + TNG
Sbjct: 68  LTGGEPLVRKDAPAIIEILSKLPVELTMTTNG 99


>gi|254468647|ref|ZP_05082053.1| coenzyme PQQ biosynthesis protein E [beta proteobacterium KB13]
 gi|207087457|gb|EDZ64740.1| coenzyme PQQ biosynthesis protein E [beta proteobacterium KB13]
          Length = 394

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 10/101 (9%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R    C FC   TD+     TK    N D+   ++ +    G  +     
Sbjct: 17  PLWLLAEITYRCPLHCAFCYNPTDYA--DHTK-NELNTDEWIKVLGDARKMGALQLG--- 70

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGID 129
           ++GGEPLL+ D+  ++   N+ G+   + T+G     + ID
Sbjct: 71  ISGGEPLLRDDIEDIVTEANQLGYYSNLITSGVGLTEKRID 111


>gi|299132405|ref|ZP_07025600.1| Radical SAM domain protein [Afipia sp. 1NLS2]
 gi|298592542|gb|EFI52742.1| Radical SAM domain protein [Afipia sp. 1NLS2]
          Length = 513

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 12/101 (11%)

Query: 31  GCNLWSGREQDRLSAQCRF-------CDT--DFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           GC    G   D     C         CD            G    ++++  ++++ ++  
Sbjct: 102 GCPHDCGLCPDHEQHACLGIIEVNSACDMNCPLCFADAAPGFSLTMEEVEQMLDD-YVRT 160

Query: 82  EKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFE-IAVETNG 120
           E +      +GGEP +    +  ++A   R    + + TNG
Sbjct: 161 EGQPEVVQFSGGEPTVHPRIIDFVRAAYARDIRFVMLNTNG 201


>gi|238925096|ref|YP_002938613.1| hypothetical protein EUBREC_2749 [Eubacterium rectale ATCC 33656]
 gi|238876772|gb|ACR76479.1| Hypothetical protein EUBREC_2749 [Eubacterium rectale ATCC 33656]
          Length = 296

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 13/98 (13%)

Query: 33  NLWSGREQDRLSAQCRF---------CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           N++    +D +  Q  +         C T F GI+        + ++ + +    + G +
Sbjct: 10  NVFEDSMEDSILPQIVWHITDKCYLNCKTCFAGIKKETLEDMPISKVREYLLCMKLLGVQ 69

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           +     ++GGEPLL  D+  L+    ++GF + + T G
Sbjct: 70  K---IDISGGEPLLYKDLSILVNECIRQGFYVTITTRG 104


>gi|269119695|ref|YP_003307872.1| glycyl-radical enzyme activating protein family [Sebaldella
           termitidis ATCC 33386]
 gi|268613573|gb|ACZ07941.1| glycyl-radical enzyme activating protein family [Sebaldella
           termitidis ATCC 33386]
          Length = 298

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
            +   D++ D + + +   +       ++GGE L+  D    LI+ + +     A+ET+G
Sbjct: 102 EKMTADEVFDEVMKDYPYYKNSNGGLTVSGGEVLMNSDFAYELIKKVKEEYISTAIETSG 161


>gi|194334897|ref|YP_002016757.1| radical SAM domain-containing protein [Prosthecochloris aestuarii
           DSM 271]
 gi|194312715|gb|ACF47110.1| Radical SAM domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 548

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 18/98 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       +  ++          +       +  + L  +I+           Y  + 
Sbjct: 251 CNLTCEVCYTKNLSK---------NVNALSDELFLSEVLQPIIDS-------GVSYVTIL 294

Query: 92  GGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQG 127
           GGEPLL+ D+   ++  L K    + + TNGT+   + 
Sbjct: 295 GGEPLLKKDLLYEVVCRLRKNNIYVKIITNGTLIISKD 332


>gi|65319439|ref|ZP_00392398.1| COG2896: Molybdenum cofactor biosynthesis enzyme [Bacillus
           anthracis str. A2012]
          Length = 337

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  F+  +         D++  L       G  + R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPDYAFLQEEC----LLTFDEIERLARLFISMGVNKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQALNK-RG-FEIAVETNG 120
           GEPLL+ D+P LI  L K  G  +I + TNG
Sbjct: 75  GEPLLRKDLPKLIARLAKLEGXKDIGLTTNG 105


>gi|256372616|ref|YP_003110440.1| molybdenum cofactor biosynthesis protein A [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256009200|gb|ACU54767.1| molybdenum cofactor biosynthesis protein A [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 335

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 9/99 (9%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C  +       +G   + +++  +   + +      +   +TGGEP ++  
Sbjct: 24  DRCNFRCTYCMPEEGMHWLDRGELLSFEEITRI--ARVMATAFRLQSVRITGGEPTVRAQ 81

Query: 101 VP-LIQALNK------RGFEIAVETNGTIEPPQGIDWIC 132
           VP LI+ L +       G E+++ TNG        D + 
Sbjct: 82  VPSLIEQLAQVRRPDGTGLELSMTTNGATFALLADDLVS 120


>gi|229124961|ref|ZP_04254135.1| Radical SAM domain protein [Bacillus cereus 95/8201]
 gi|228658462|gb|EEL14128.1| Radical SAM domain protein [Bacillus cereus 95/8201]
          Length = 259

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           ++  A  +++     +    +     GEPLL   +  L+    ++GF++ + TNGT+
Sbjct: 1   MEDFAKRLDQIKPHTDYIYLHVK---GEPLLHPKIDQLLDLSYEKGFKVNITTNGTL 54


>gi|182412773|ref|YP_001817839.1| molybdenum cofactor biosynthesis protein A [Opitutus terrae PB90-1]
 gi|177839987|gb|ACB74239.1| molybdenum cofactor biosynthesis protein A [Opitutus terrae PB90-1]
          Length = 338

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 19/109 (17%)

Query: 41  DRLSAQCRFCDTDFVGIQG----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
           DR + +C +C    V              +  ++  ++      G  + R   LTGGEPL
Sbjct: 21  DRCNFRCPYCMPKEVFGPAHAFLRDPQLMSQAEITRIVRAFQQLGVTKVR---LTGGEPL 77

Query: 97  LQVDVP-LIQALNKRGFEI---AVETNG----TIEPP---QGIDWICVS 134
           L+ DVP L+++L +    +   A+ TNG       P     G+D + VS
Sbjct: 78  LRADVPDLVRSLKQE-LRVPDLALTTNGWLLEKYAPSLREAGLDRVNVS 125


>gi|126458921|ref|YP_001055199.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126248642|gb|ABO07733.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548]
          Length = 363

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 9/101 (8%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
           S  C +C       Q     +Y    +   +EE     ++        GG+P  QV   L
Sbjct: 147 SLDCLYC-------QNWHYRKYPRRPVFASVEELDRAMDRRVSCVCFFGGDPAPQVVHAL 199

Query: 104 I--QALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
           +  +   ++G  +  ET+G + P      + +S K G  +K
Sbjct: 200 LVAKRAAEKGVRVCWETSGQLAPHLLDKVVEISLKTGGIVK 240


>gi|293400765|ref|ZP_06644910.1| putative pyruvate formate-lyase activating enzyme
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305791|gb|EFE47035.1| putative pyruvate formate-lyase activating enzyme
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 281

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 7/117 (5%)

Query: 32  CNLWSGR----EQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
           C   +      +    S +C  CDT           +     + +L+ EQ    +   R 
Sbjct: 57  CPTDALTLEAGKVLWNSEKCVDCDTCIHTCTHLASPKIRYMSVEELV-EQIKAKKAFLRG 115

Query: 88  CVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
             ++GGE +      + L + + K G    +++NG  +  Q    + V      D+K
Sbjct: 116 ITVSGGECMNHAAFLLDLFKEVKKLGLTCLIDSNGYYDFSQYPQLMAVCDGVMLDVK 172


>gi|255530735|ref|YP_003091107.1| Radical SAM domain-containing protein [Pedobacter heparinus DSM
           2366]
 gi|255343719|gb|ACU03045.1| Radical SAM domain protein [Pedobacter heparinus DSM 2366]
          Length = 463

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 12/82 (14%)

Query: 31  GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G   D     C             C T +       G   +++++ + + +  +
Sbjct: 80  GCPYDCGLCTDHEQHSCLTIIEVTDRCNLSCPTCYAMSSPNYGRHRSLEEI-NKMMDVVV 138

Query: 80  TGEKEGRYCVLTGGEPLLQVDV 101
             E E     L+GGEP +  D 
Sbjct: 139 ANEGEPDVVQLSGGEPTVHPDF 160


>gi|83596383|gb|ABC25540.1| glycerol dehydratase activator [Roseburia inulinivorans DSM 16841]
          Length = 264

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 27/112 (24%)

Query: 21  GRVA-VFCRFSGCNLWSGREQDRLSAQCRFC----------DTDFVGIQGTKGGR-YNVD 68
           G    VF    GC           + +CR+C          +T  +  +    G+   V 
Sbjct: 24  GVRTIVF--LKGC-----------ALRCRWCCNPESQSFEVETMTINGKPKVMGKDVTVA 70

Query: 69  QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118
           ++   +E       + G    L+GGE  LQ +    L++A    G   A+E+
Sbjct: 71  EVMKTVERDMPYYLQSGGGITLSGGECTLQPEFSLGLLRAAKDLGISTAIES 122


>gi|327440285|dbj|BAK16650.1| predicted Fe-S oxidoreductase [Solibacillus silvestris StLB046]
          Length = 367

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 12/84 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99
           +C  C   +  +          D++   ++E         R    TGGEPLL        
Sbjct: 39  RCSHCAVGYTLLTKELPA-IPADEIIRKLDEVETL-----RTMSFTGGEPLLTKKGIKDN 92

Query: 100 DVPLIQALNKRGFEIAVETNGTIE 123
            +PL++    RG +  + +N T+ 
Sbjct: 93  LLPLLKYAKSRGIKTQINSNLTLP 116


>gi|295697188|ref|YP_003590426.1| molybdenum cofactor biosynthesis protein A [Bacillus tusciae DSM
           2912]
 gi|295412790|gb|ADG07282.1| molybdenum cofactor biosynthesis protein A [Bacillus tusciae DSM
           2912]
          Length = 344

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C                 +++  ++      G K  R   +TGGEPL++ D
Sbjct: 33  DRCNLRCLYCMPAHGVQFMESRRLMTYEEIVTVVRVAARLGVKRLR---ITGGEPLVRPD 89

Query: 101 VP-LIQAL 107
           +  LI+AL
Sbjct: 90  IDRLIEAL 97


>gi|85813924|emb|CAF31553.1| putative fortimicin biosynthetic oxidoreductase [Micromonospora
           olivasterospora]
          Length = 262

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 50  CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQAL 107
           CD   V     +  R + D++   + E W  G    R+   +GGE  L       +I   
Sbjct: 30  CDHCIVESSPRRRERLSTDEVRATLSEAWENGR---RHVTFSGGEVFLYPREMREVITWA 86

Query: 108 NKRGFEIAVETN 119
            + G+ + VE+N
Sbjct: 87  RELGYVVDVESN 98


>gi|110639435|ref|YP_679644.1| radical SAM family Fe-S oxidoreductase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282116|gb|ABG60302.1| Fe-S oxidoreductase, radical SAM superfamily [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 326

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 12/94 (12%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN +      R +A C FCD     I          + +   + +    G    +    T
Sbjct: 10  CNYYVTY---RCNATCGFCD-----IWEKPSPYVTPEAVEQNMRDLKKLG---VKVIDFT 58

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124
           GGEPLL  ++  L++   K G    + TN  + P
Sbjct: 59  GGEPLLHREMDTLLRIAKKYGMITTLTTNALLYP 92


>gi|291302732|ref|YP_003514010.1| Radical SAM domain-containing protein [Stackebrandtia nassauensis
           DSM 44728]
 gi|290571952|gb|ADD44917.1| Radical SAM domain protein [Stackebrandtia nassauensis DSM 44728]
          Length = 184

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 26/82 (31%), Gaps = 19/82 (23%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           F GC           S  C  C         T G       +A+L        ++     
Sbjct: 27  FQGC-----------SLACPGC-----FNPETHGPDAEELSVAELAGRVLARADRWEG-I 69

Query: 89  VLTGGEPLLQVDVPLIQALNKR 110
            LTGGEPL Q     +  L +R
Sbjct: 70  TLTGGEPLQQP--EAVAELCRR 89


>gi|224368537|ref|YP_002602700.1| MoaA1 [Desulfobacterium autotrophicum HRM2]
 gi|223691253|gb|ACN14536.1| MoaA1 [Desulfobacterium autotrophicum HRM2]
          Length = 329

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 22/171 (12%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +C +C  D +    +       +++  +++     G  + R   +TG
Sbjct: 14  NYLRVSITDRCNLRCLYCIPDGIFPMLSHEEILTYEEILRIVKTGSKMGISKVR---ITG 70

Query: 93  GEPLLQVDV-PLIQALNK-RG-FEIAVETNGTIEPP-------QGIDWICVS-----PKA 137
           GEPL++      +  L+K +G  +I++ TNG +           GI  I VS     PK 
Sbjct: 71  GEPLVRKGACDFLSRLSKIKGLLDISLTTNGVLLEKNIEQIKAAGIHRINVSLDTLQPKK 130

Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
                I      K V+    +   +  GF   + ++  M G   +E  +LA
Sbjct: 131 YKQ--ITRMNMFKRVWD--GIMAAHAAGFSPIKLNVVVMKGINDDEIEDLA 177


>gi|121534709|ref|ZP_01666530.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
 gi|121306729|gb|EAX47650.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
          Length = 390

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 17/96 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +      ++ G   T+  +  +D LA +          +    + +
Sbjct: 50  CNLSCQHCYISAEDR------EYAGELTTEEAKAFIDDLAAM----------KVPVLLFS 93

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           GGEPL++ D+  L      RG    + TNGT+  P 
Sbjct: 94  GGEPLVRPDLFELGAYARDRGIRPVISTNGTLITPA 129


>gi|294340261|emb|CAZ88633.1| putative Fe-S oxidoreductase [Thiomonas sp. 3As]
          Length = 465

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 10/92 (10%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPL 103
            C +C  +    +  + G   VD     +                 GGEPL+   +  PL
Sbjct: 77  ACSYC--NQASQRPAQEGAGRVDAFLATLATWLSVERHRAPTFEFWGGEPLVYWKLLQPL 134

Query: 104 IQALN----KRGFEIAVETNGTIEPPQGIDWI 131
            +AL       G  +   TNG +     +DW+
Sbjct: 135 AEALRQRHPDAGLFLI--TNGALLDTAKVDWL 164


>gi|229172864|ref|ZP_04300418.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus MM3]
 gi|228610609|gb|EEK67877.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus MM3]
          Length = 337

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 14/89 (15%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C       +D+  +Q         +++  L       G ++ R   LTGGE
Sbjct: 22  DRCNFRCTYCMPAEVFGSDYAFLQEEF--LLTFNEIERLARLFIGMGVEKIR---LTGGE 76

Query: 95  PLLQVDVP-LIQAL-NKRGFE-IAVETNG 120
           PLL+ D+P LI  L    G + I + TNG
Sbjct: 77  PLLRKDLPKLIARLTKLEGLKDIGLTTNG 105


>gi|253699656|ref|YP_003020845.1| radical SAM protein [Geobacter sp. M21]
 gi|251774506|gb|ACT17087.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 409

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 24/109 (22%)

Query: 21  GRVAVFC--RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G   +F   R   CN+                DT      G      + +  A+ +    
Sbjct: 77  GWSCLFINGR---CNVSCFYCPTSQD------DTSHPQTNGIAFA--SPENYAEYVARFG 125

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKR-GFEIAV--ETNGTI 122
            TG        ++GGEPLL +D  L  + A+ +R G  + +   TNGT+
Sbjct: 126 FTGA------SISGGEPLLTLDRTLAYLDAVKRRCGDSVHLWMYTNGTL 168


>gi|73972793|ref|XP_538905.2| PREDICTED: similar to Molybdenum cofactor biosynthesis protein 1 B
           (MOCS1B) (Molybdenum cofactor synthesis-step 1 protein
           A-B) (Molybdenum cofactor biosynthesis protein C) [Canis
           familiaris]
          Length = 634

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +       K      +++  L       G  + R   LT
Sbjct: 80  CNL-----------RCQYCMPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 125

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GGEPL++ D V ++  L++  G   I + TNG
Sbjct: 126 GGEPLIRPDVVDIVAQLHQLEGLRTIGITTNG 157


>gi|148262099|ref|YP_001228805.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146395599|gb|ABQ24232.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 357

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 17/95 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              CNL            CR C ++    +G     +  ++   L++E     +      
Sbjct: 15  TQKCNLKC--------VHCR-CSSEMTSSEGD----FTTEEGKKLLKE---IADFSKPVV 58

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           VL+GGEPL++ D+  L       G  + + +NG +
Sbjct: 59  VLSGGEPLMRKDIFELAGYGTSLGLRMCMASNGAL 93


>gi|94311377|ref|YP_584587.1| molybdenum cofactor biosynthesis protein A [Cupriavidus
           metallidurans CH34]
 gi|93355229|gb|ABF09318.1| molybdopterin biosynthesis protein A [Cupriavidus metallidurans
           CH34]
          Length = 395

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 18/85 (21%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +  +     + +++          G ++ R   LTGGE
Sbjct: 72  DRCNFRCVYCMPKEVFDKDYTFLPHS--ELLSFEEIERTARIFVSQGVEKIR---LTGGE 126

Query: 95  PLLQVDVP-LIQALNKRGFEIAVET 118
           PLL+ ++  L++ L +      +ET
Sbjct: 127 PLLRKNIERLVEMLAR------IET 145


>gi|307824472|ref|ZP_07654697.1| molybdenum cofactor biosynthesis protein A [Methylobacter
           tundripaludum SV96]
 gi|307734456|gb|EFO05308.1| molybdenum cofactor biosynthesis protein A [Methylobacter
           tundripaludum SV96]
          Length = 334

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 17/89 (19%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C    +    T   R  V  L ++        E   +   +TGGEPL++  
Sbjct: 26  DRCDFRCLYC----MAEDMTFLPRAQVLTLEEIYTLAQAFAELGVKKIRITGGEPLVRKG 81

Query: 101 VPLIQALNKRGFEIAVE--------TNGT 121
              ++ L   G    +E        TNG+
Sbjct: 82  A--VELLQNIG---HIESLNELVITTNGS 105


>gi|269139528|ref|YP_003296229.1| pyruvate-formate lyase-activating enzyme [Edwardsiella tarda
           EIB202]
 gi|267985189|gb|ACY85018.1| pyruvate-formate lyase-activating enzyme [Edwardsiella tarda
           EIB202]
 gi|304559417|gb|ADM42081.1| Pyruvate formate-lyase activating enzyme [Edwardsiella tarda
           FL6-60]
          Length = 246

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V++L              G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKDTVTYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A    G    ++TNG
Sbjct: 72  GGVTASGGEAMLQAEFVRDWFRACQAEGIHTCLDTNG 108


>gi|255526789|ref|ZP_05393689.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|296187941|ref|ZP_06856333.1| radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|255509517|gb|EET85857.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|296047067|gb|EFG86509.1| radical SAM domain protein [Clostridium carboxidivorans P7]
          Length = 457

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 22/117 (18%)

Query: 31  GCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           GC    G   +              R + +C+FC   F      K     ++++      
Sbjct: 75  GCPFDCGLCSEHRQHTCTALIEVTERCNLKCKFC---FADSYRDKKKDVPIEKI--RFMY 129

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNGTIEPPQGIDWI 131
           + I          ++GGEP L+ D+P +I+     GF+ I V TNG I   Q  D++
Sbjct: 130 ERILEASGACNIQISGGEPTLRDDLPQIIELGINLGFKFIQVNTNG-IRIAQDEDYV 185


>gi|222152350|ref|YP_002561525.1| pyruvate formate-lyase activating enzyme [Streptococcus uberis
           0140J]
 gi|222113161|emb|CAR40596.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
           uberis 0140J]
          Length = 257

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 32/112 (28%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCD-------------TDFVGIQGTKGGRYNVDQL 70
            VF    GC L           +C +C              T       T G +  V ++
Sbjct: 24  TVF--LKGCPL-----------RCPWCANPESQKKAPEEMLTADCKGHETVGEQKTVSEV 70

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVET 118
            + + +     E+ G    L+GGE  +    P  +A+       G   A+ET
Sbjct: 71  MEEVLKDRDFYEESGGGVTLSGGE--IFAQYPFAKAILKEAKANGLHTAIET 120


>gi|223938127|ref|ZP_03630024.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [bacterium Ellin514]
 gi|223893171|gb|EEF59635.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [bacterium Ellin514]
          Length = 471

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI--CV 133
                E +     + GGEPL+   +  L+  + K+G  + + TNG     +  D++    
Sbjct: 65  LGSAQECDAPMVSICGGEPLIYPKIEELVDGILKQGRIVYICTNGMFMRKKMRDYLAAAY 124

Query: 134 SP 135
           SP
Sbjct: 125 SP 126


>gi|170290611|ref|YP_001737427.1| tRNA-modifying enzyme [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174691|gb|ACB07744.1| Wyosine base formation domain protein [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 325

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 29/105 (27%)

Query: 47  CRFC------DTDFV--GIQGTKGGRYNVDQLAD-----------------LIEEQWITG 81
           C +C      D       ++  +G   + +++A+                 +  + W+  
Sbjct: 73  CVYCWRLNASDVPMSQRWVEVPEGKWDDPEEIAEESVRVHRMLVQGYKGVRVFNKDWVRE 132

Query: 82  EKEGRY--CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
            +E ++    LTG EP L   +  L++A +KRG    + TNGT+ 
Sbjct: 133 AEEPKHAAISLTG-EPTLYPFIGGLVEAFSKRGMTTFIVTNGTMP 176


>gi|168214364|ref|ZP_02639989.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
           CPE str. F4969]
 gi|170714163|gb|EDT26345.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
           CPE str. F4969]
          Length = 331

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D+ + +C +C                +D++  +++E    G K+ R   LTGGEPL++  
Sbjct: 26  DKCNLRCAYCMEKDHNDFIQNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 82

Query: 101 VPLIQALNKRGFEIAVE-----TNG 120
           V  +  +        +E     TNG
Sbjct: 83  V--VDLIKNINKIPEIEEICLTTNG 105


>gi|332045258|gb|EGI81451.1| Radical SAM domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 463

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 56/162 (34%), Gaps = 28/162 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           C L      DR +  C  C   + G   T G    ++++  +++   +  EKE     ++
Sbjct: 96  C-LTVVEVTDRCNLTCPTC---YAGSSPTYGRHRTLEEIKTMLD-TIVANEKEPDVVQIS 150

Query: 92  GGEPLLQVDV-PLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
           GGEP +      ++          + + TNG                      +   + L
Sbjct: 151 GGEPTIHPQFWEIMDYAKSLPIRHLMLNTNG----------------IKIAKNLAFAERL 194

Query: 150 KLVFPQVNVSPENYIGFD-FERFSLQPMDGPFLEENTNLAIS 190
           K   P      E Y+ FD FE   L+ + G  L +    AI 
Sbjct: 195 KTYAP----DFEIYLQFDSFENHVLRELRGADLNDIRKQAIK 232


>gi|307354625|ref|YP_003895676.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
           DSM 11571]
 gi|307157858|gb|ADN37238.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 343

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 33  NLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L  G E     + +CR C +        +       +  DL ++      +E     +T
Sbjct: 7   PLIIGWELTLECNMRCRHCGS---TAGAKRPNELTTKEALDLCDQFPDLLVQE---VDIT 60

Query: 92  GGEPLLQVDVPLIQA-LNKRGFEIAVETNGTIEPPQGI 128
           GGEPLL+ D  +I   L   G  + + TNG +   + I
Sbjct: 61  GGEPLLRKDWTIIAGHLQDLGIPVNILTNGLVMDSEMI 98


>gi|299136974|ref|ZP_07030157.1| coenzyme PQQ biosynthesis protein E [Acidobacterium sp. MP5ACTX8]
 gi|298601489|gb|EFI57644.1| coenzyme PQQ biosynthesis protein E [Acidobacterium sp. MP5ACTX8]
          Length = 361

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R    C +C       +       +      + E+    G        LTGGEPL + D+
Sbjct: 23  RCPLHCLYCSNPLELKRAE--EELSTADWKRVFEQAASLGILHLH---LTGGEPLARKDL 77

Query: 102 -PLIQALNKRGFEIAVETNG 120
             LI   ++ G  + + T+G
Sbjct: 78  AELIDTAHRAGLYVNMITSG 97


>gi|238920354|ref|YP_002933869.1| pyruvate formate lyase-activating enzyme 1 [Edwardsiella ictaluri
           93-146]
 gi|238869923|gb|ACR69634.1| pyruvate formate-lyase 1-activating enzyme, putative [Edwardsiella
           ictaluri 93-146]
          Length = 246

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V++L              G
Sbjct: 27  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEELMKDTVTYRHFMNASG 71

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A    G    ++TNG
Sbjct: 72  GGVTASGGEAMLQAEFVRDWFRACQAEGIHTCLDTNG 108


>gi|296131888|ref|YP_003639135.1| Radical SAM domain protein [Thermincola sp. JR]
 gi|296030466|gb|ADG81234.1| Radical SAM domain protein [Thermincola potens JR]
          Length = 299

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 82  EKEGRYCVLTGGEPLLQVD-----VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134
           +K  R  +  GGEPLL  D       L++   +  F + V TNGT+      D I VS
Sbjct: 66  KKGIRLLIFEGGEPLLWKDGSKTIHDLVREAKRYFFCVGVTTNGTLPLDVDTDIIWVS 123


>gi|229058399|ref|ZP_04196783.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH603]
 gi|228719908|gb|EEL71498.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH603]
          Length = 307

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 21/110 (19%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-RGFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+  +P LIQ LN+  G E I +
Sbjct: 14  SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRKGLPELIQRLNEIEGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
            TNG++      D        + VS        +    E +  +   N S
Sbjct: 71  TTNGSLLKKFAPDLYKAGLSRVTVS--------LDSLDEERFSYLNGNRS 112


>gi|218247631|ref|YP_002373002.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Cyanothece sp. PCC 8801]
 gi|257061034|ref|YP_003138922.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Cyanothece sp. PCC 8802]
 gi|218168109|gb|ACK66846.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Cyanothece sp. PCC 8801]
 gi|256591200|gb|ACV02087.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Cyanothece sp. PCC 8802]
          Length = 338

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
                 + GGEPLL   +  +++ L +R   + + TN  I   + +D    SP     + 
Sbjct: 72  GAPVVSIPGGEPLLHPQIDEIVKGLVQRKKFVYLCTN-AILLEKSLDKFEPSPYLTFSVH 130

Query: 143 IKGGQE 148
           + G +E
Sbjct: 131 LDGLRE 136


>gi|37521648|ref|NP_925025.1| hypothetical protein gll2079 [Gloeobacter violaceus PCC 7421]
 gi|81709852|sp|Q7NIV3|RLMN_GLOVI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|35212646|dbj|BAC90020.1| gll2079 [Gloeobacter violaceus PCC 7421]
          Length = 348

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 60/181 (33%), Gaps = 27/181 (14%)

Query: 15  GEGG-HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73
           GE     G  A   R + C       Q      CRFC T   G     G    V ++ D 
Sbjct: 86  GETVETVGIPAA-ERLTVC----VSSQVGCPMACRFCATGQSGFARNLG----VHEIVDQ 136

Query: 74  IEEQWITGEKEGRYCVLTG-GEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
           +        +   + V  G GEPLL     ++QAL     +I +          G   I 
Sbjct: 137 VLTVQEGFGRRVSHVVFMGMGEPLL-NLGAVVQALRVLNGDIGI----------GQRQIT 185

Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF-LEENTNLAISY 191
           VS   G   +I+     KL   Q+ ++   +      R  L P    + +EE       Y
Sbjct: 186 VS-TVGVPGQIRRLGTYKL---QITLAVSLHAPNQDLRLKLIPTAQHYPIEELLEDCRDY 241

Query: 192 C 192
            
Sbjct: 242 V 242


>gi|114566230|ref|YP_753384.1| metallo cofactor biosynthesis protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337165|gb|ABI68013.1| metallo cofactor biosynthesis protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 390

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 8/92 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L      +R + +C+ C   ++  +  K     + ++  ++I +       +    + +
Sbjct: 40  PLVVWNMTNRCNLRCKHC---YIEAEDRKYQDELSTEEAREMINDL---AAMKVPVLLFS 93

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122
           GGEPL+ Q    L Q   ++G    + TNGT+
Sbjct: 94  GGEPLIRQDIFELGQMAAEKGLRPVISTNGTL 125


>gi|228990948|ref|ZP_04150911.1| Molybdenum cofactor biosynthesis protein A [Bacillus pseudomycoides
           DSM 12442]
 gi|228768728|gb|EEM17328.1| Molybdenum cofactor biosynthesis protein A [Bacillus pseudomycoides
           DSM 12442]
          Length = 307

 Score = 40.0 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 21/110 (19%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+ ++P LI+ LNK  G E I +
Sbjct: 14  SNDKILSFDEIERIARIFVSLGVRKLR---ITGGEPLLRKNLPELIERLNKIDGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
            TNG++      D        + VS        +    E +  +   N S
Sbjct: 71  TTNGSLLKKFAPDLYKAGLSRVTVS--------LDSLDEERFSYLNGNRS 112


>gi|229004686|ref|ZP_04162423.1| Molybdenum cofactor biosynthesis protein A [Bacillus mycoides
           Rock1-4]
 gi|228756574|gb|EEM05882.1| Molybdenum cofactor biosynthesis protein A [Bacillus mycoides
           Rock1-4]
          Length = 307

 Score = 40.0 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 21/110 (19%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+ ++P LI+ LNK  G E I +
Sbjct: 14  SNDKILSFDEIERIARIFVSLGVRKLR---ITGGEPLLRKNLPELIERLNKIDGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
            TNG++      D        + VS        +    E +  +   N S
Sbjct: 71  TTNGSLLKKFAPDLYKAGLSRVTVS--------LDSLDEERFSYLNGNRS 112


>gi|262199584|ref|YP_003270793.1| radical SAM protein [Haliangium ochraceum DSM 14365]
 gi|262082931|gb|ACY18900.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365]
          Length = 189

 Score = 40.0 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 30/87 (34%), Gaps = 25/87 (28%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC           S  C  C   DT         G    +D L D I  Q    E   
Sbjct: 26  FQGC-----------SLGCPGCFNPDT-----HERGGQAREIDDLVDEILAQGSAIEG-- 67

Query: 86  RYCVLTGGEPLLQV--DVPLIQALNKR 110
               L+GGEP  Q    + L+QA+  R
Sbjct: 68  --VTLSGGEPFEQPAAALALMQAVRAR 92


>gi|224024568|ref|ZP_03642934.1| hypothetical protein BACCOPRO_01294 [Bacteroides coprophilus DSM
           18228]
 gi|224017790|gb|EEF75802.1| hypothetical protein BACCOPRO_01294 [Bacteroides coprophilus DSM
           18228]
          Length = 365

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R +  C+ C +D                   +I+             + TGGEPL++ D+
Sbjct: 42  RCNIHCKHCGSDCKSTAEIPD--MPAADFLRVIDSLTPHVNPHEVNIIFTGGEPLVRKDL 99

Query: 102 PLI-QALNKRGFEIAVETNG 120
             + QAL  RG+  ++ TNG
Sbjct: 100 EEVGQALYHRGYPWSMVTNG 119


>gi|157822765|ref|NP_001100351.1| molybdenum cofactor biosynthesis protein 1 [Rattus norvegicus]
 gi|149069512|gb|EDM18953.1| molybdenum cofactor synthesis 1 (predicted), isoform CRA_b [Rattus
           norvegicus]
          Length = 480

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR+C  +       K      +++  L       G  + R   LT
Sbjct: 80  CNL-----------RCRYCMPEEGVSLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 125

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GGEPL++ D V ++  L++  G   I V TNG
Sbjct: 126 GGEPLIRPDVVDIVARLHQLEGLRTIGVTTNG 157


>gi|157163946|ref|YP_001467812.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Campylobacter concisus 13826]
 gi|112801727|gb|EAT99071.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Campylobacter concisus 13826]
          Length = 234

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 32/123 (26%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           F+GCN+           +C +C   +        G  +  ++ D ++     G+  G   
Sbjct: 35  FAGCNM-----------RCGYC---YNIEVVRSNGTISFSEVCDFLDR--RVGKLNG--I 76

Query: 89  VLTGGE----PLLQVDVPLIQALNKRGFEIAVETNGTI------EPPQG-IDWICVSPKA 137
           V +GGE    PL    + L + +  RGF + V+TNG+          +G ID+I +  KA
Sbjct: 77  VFSGGECTANPL---FLRLAREVKARGFSLKVDTNGSYRDVLKKAIDEGLIDYIALDFKA 133

Query: 138 GCD 140
             +
Sbjct: 134 PKE 136


>gi|323939033|gb|EGB35251.1| pflC protein [Escherichia coli E482]
          Length = 213

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 6/101 (5%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119
           G   ++D L   + +  I     G    L+GGE L+Q +     +Q L   G   A+ET 
Sbjct: 16  GRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETA 75

Query: 120 GTIEPPQGIDWICVSPKAGCDLKI----KGGQELKLVFPQV 156
           G     + +    +  +   DLKI    +    +K+  P+V
Sbjct: 76  GDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRV 116


>gi|148729628|gb|ABR09216.1| PqqE [Enterobacter cloacae]
          Length = 193

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R   QC +C         T+    +  Q  ++  +    G  +  +   +GGEPLL+ D+
Sbjct: 7   RCPLQCPYCSNPLDF--STQAQELSTAQWIEVFRQARAMGSVQLGF---SGGEPLLRKDL 61

Query: 102 P-LIQALNKRGFEIAVETNG 120
           P LI A    GF   + T+G
Sbjct: 62  PELIAAARGMGFYTNLITSG 81


>gi|293373267|ref|ZP_06619626.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f]
 gi|292631752|gb|EFF50371.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f]
          Length = 448

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 17/99 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C   ++    T+       ++  LI +              +
Sbjct: 106 CNL-----------SCPHC---YMFSGKTERNELETQEIKKLISDFTKISNGTS--ITFS 149

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGID 129
           GGEP ++ D   +++   + G E+ + TNGT    + I 
Sbjct: 150 GGEPTIRTDFEEIVRTAYEMGLEVKILTNGTQLSSERIT 188


>gi|225376083|ref|ZP_03753304.1| hypothetical protein ROSEINA2194_01720 [Roseburia inulinivorans DSM
           16841]
 gi|225212103|gb|EEG94457.1| hypothetical protein ROSEINA2194_01720 [Roseburia inulinivorans DSM
           16841]
          Length = 283

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 27/112 (24%)

Query: 21  GRVA-VFCRFSGCNLWSGREQDRLSAQCRFC----------DTDFVGIQGTKGGR-YNVD 68
           G    VF    GC           + +CR+C          +T  +  +    G+   V 
Sbjct: 43  GVRTIVF--LKGC-----------ALRCRWCCNPESQSFEVETMTINGKPKVMGKDVTVA 89

Query: 69  QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118
           ++   +E       + G    L+GGE  LQ +    L++A    G   A+E+
Sbjct: 90  EVMKTVERDMPYYLQSGGGITLSGGECTLQPEFSLGLLRAAKDLGISTAIES 141


>gi|155967348|gb|ABU41512.1| NirJ2 [Heliophilum fasciatum]
          Length = 330

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 49  FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL 107
           FCD  +           + ++   L++E    G    +  + +GGEPL++ D+  L+Q  
Sbjct: 14  FCDHCYRDAGAKASEELSTEEGKSLLDEIAKAG---FKIMIFSGGEPLMRPDIVELVQHA 70

Query: 108 NKRGFEIAVETNGTI 122
              G      TNGT+
Sbjct: 71  TNLGLRSVFGTNGTL 85


>gi|150403505|ref|YP_001330799.1| molybdenum cofactor biosynthesis protein A [Methanococcus
           maripaludis C7]
 gi|189028688|sp|A6VJM2|MOAA_METM7 RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|150034535|gb|ABR66648.1| putative molybdenum cofactor biosynthesis protein A [Methanococcus
           maripaludis C7]
          Length = 298

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 28/119 (23%)

Query: 28  RFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           R S    CNL           +C +C     G     G   + D++  +++      E  
Sbjct: 13  RLSITPKCNL-----------KCFYC--HKEGRNEEHGKLMSADEIGKIVKSSL---EFG 56

Query: 85  GRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNGTI-------EPPQGIDWICVS 134
            R   ++GGEPLL+ D+P +I+ +     + I++ TNG +           G+D + VS
Sbjct: 57  VRKIKISGGEPLLRTDLPEIIENIKDDQIKDISLTTNGILLEKYAQKLKDAGLDRVNVS 115


>gi|307326965|ref|ZP_07606156.1| coenzyme PQQ biosynthesis protein E [Streptomyces violaceusniger Tu
           4113]
 gi|306887501|gb|EFN18496.1| coenzyme PQQ biosynthesis protein E [Streptomyces violaceusniger Tu
           4113]
          Length = 368

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 17/91 (18%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GC L            C +C      ++  +    +  +  +++ +    G        L
Sbjct: 17  GCPL-----------HCPYCSNPLELVR--RSRELSTAEWTEVMRQAGEFGVVHTH---L 60

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           +GGEPLL+ D+  ++ A    G    + T+G
Sbjct: 61  SGGEPLLRPDLAEIVIAAESAGIYTQLVTSG 91


>gi|156937252|ref|YP_001435048.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Ignicoccus hospitalis KIN4/I]
 gi|156566236|gb|ABU81641.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Ignicoccus hospitalis KIN4/I]
          Length = 241

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 38/118 (32%), Gaps = 26/118 (22%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL           +C FC       Q           L +      +   +   Y  L
Sbjct: 28  GCNL-----------KCPFC---HNWRQAEWMDCAPF--LEERFLNDLMESREFVDYVHL 71

Query: 91  TGGEPLLQVDVPLIQAL----NKRGFEIAVETNGT----IEPPQGIDWICVSPKAGCD 140
           TGGEP LQ    L++ +       G   ++ TN T    +E  +  D +    K    
Sbjct: 72  TGGEPTLQP--ELVKKISSLSKSNGVPFSLNTNCTTKQALELIRLADHVAFDVKVPFP 127


>gi|124027112|ref|YP_001012432.1| Fe-S oxidoreductase [Hyperthermus butylicus DSM 5456]
 gi|123977806|gb|ABM80087.1| predicted Fe-S oxidoreductase [Hyperthermus butylicus DSM 5456]
          Length = 373

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 11/89 (12%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LTG 92
           LW        + +CR+C   F         RY V++L +LIE        + R  V   G
Sbjct: 14  LWFVFTTGLCNLRCRYCGGGFPPDIVPPWPRYRVEELVELIERV------DSRPVVFFYG 67

Query: 93  GEPLLQVDV--PLIQALNKRGFEIAVETN 119
           GEPLL       ++ AL    F I   TN
Sbjct: 68  GEPLLNPGFIREVMDALPHAVFGIQ--TN 94


>gi|303246271|ref|ZP_07332551.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
 gi|302492334|gb|EFL52206.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
          Length = 390

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 16/92 (17%)

Query: 32  CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           CNL           +CRFC   T        +    ++++   + +   + G  + R   
Sbjct: 27  CNL-----------RCRFCYFQTRIEAKDHPEHPFMSLEKAIAIAD--TLRGHYDNRAID 73

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           + GGEP +   +  L +     G    + TNG
Sbjct: 74  IQGGEPTIFPGIERLCEHCAGIGLTPTLITNG 105


>gi|296242740|ref|YP_003650227.1| radical SAM domain-containing protein [Thermosphaera aggregans DSM
           11486]
 gi|296095324|gb|ADG91275.1| Radical SAM domain protein [Thermosphaera aggregans DSM 11486]
          Length = 378

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 22/91 (24%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            GCN            +C FC   D   +    G R   ++LA + E    TG +   + 
Sbjct: 165 GGCNF-----------KCAFCQNYDISQVSPRSGERVTPERLARIQESLRKTGARNINHV 213

Query: 89  VLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
              GGEP     +P I  L    +   +ETN
Sbjct: 214 ---GGEPT--PHLPFI--LESLKY---LETN 234


>gi|115360443|ref|YP_777580.1| organic radical activating enzyme family protein [Burkholderia
           ambifaria AMMD]
 gi|115285771|gb|ABI91246.1| organic radical activating enzyme family protein [Burkholderia
           ambifaria AMMD]
          Length = 214

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 24/83 (28%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC           + +C+ C   DT         GG   VD +   +           
Sbjct: 25  FQGC-----------TIRCQGCISMDT-----WANAGGETTVDAILAQVRTWLPESTG-- 66

Query: 86  RYCVLTGGEPLLQVDVPLIQALN 108
               ++GGEP  Q D  LI  L+
Sbjct: 67  --ITISGGEPFDQSD-ALIALLH 86


>gi|329945461|ref|ZP_08293205.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528951|gb|EGF55889.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 253

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 45/156 (28%), Gaps = 39/156 (25%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
              VF    GC              C +C       Q     R       + +       
Sbjct: 36  TATVF--LQGCP-----------WNCFYC-----HNQALIPARTPGQVAWEEVRALLRRR 77

Query: 82  EKEGRYCVLTGGEPLLQVDVPLIQALN---KRGFEIAVETNGTIEP-------PQGIDWI 131
                  VLTGGE L Q    L  A +     GF++ + T G              +DW+
Sbjct: 78  RGLLDGVVLTGGEALRQD--ALADAAHEVIDMGFQVGLHTAGPYPRRLRDMIEAGFVDWV 135

Query: 132 CVSPKAGCDLK-IKGGQELKLVFPQVNVSPENYIGF 166
                 G D+K +    E   V  + N + + +   
Sbjct: 136 ------GLDIKALPEHYE--QVVGRANAAAKAWESL 163


>gi|296331887|ref|ZP_06874352.1| putative Fe-S oxidoreductase, radical SAM superfamily protein
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305673499|ref|YP_003865171.1| putative Fe-S oxidoreductase, radical SAM superfamily protein
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150965|gb|EFG91849.1| putative Fe-S oxidoreductase, radical SAM superfamily protein
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305411743|gb|ADM36862.1| putative Fe-S oxidoreductase, radical SAM superfamily protein
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 373

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 13/92 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   +EE         R   +TGGEP+L +      
Sbjct: 45  RCEHCAVGYT-LQPKDPNALPIDLLLKRLEEI-----PRLRSISITGGEPMLSLKSVKEY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
            VPL++  ++RG    + +N T++     +WI
Sbjct: 99  VVPLLKYAHERGVRTQINSNLTLDI-DRYEWI 129


>gi|320352978|ref|YP_004194317.1| Radical SAM domain-containing protein [Desulfobulbus propionicus
           DSM 2032]
 gi|320121480|gb|ADW17026.1| Radical SAM domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 350

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 16/92 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C +    ++      +++ +   ++ E            VL+
Sbjct: 16  CNL-----------RCVHCRSS-SQLEIDGHPDFSLTEAKRVLNE---IHAYANPVVVLS 60

Query: 92  GGEPLLQVDVPLIQA-LNKRGFEIAVETNGTI 122
           GGEPLL+ DV  I A     G  I + TNG++
Sbjct: 61  GGEPLLRPDVFEIAAHGTSLGLRICLATNGSL 92


>gi|253700443|ref|YP_003021632.1| lysine 2,3-aminomutase YodO family protein [Geobacter sp. M21]
 gi|251775293|gb|ACT17874.1| lysine 2,3-aminomutase YodO family protein [Geobacter sp. M21]
          Length = 344

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
           CRFC    +  +G         ++ D I   +I G++  R  VL+GG+PLL  D  L   
Sbjct: 107 CRFC----MRKRGVGCASMAPARVDDAIA--YIAGDQRIRDVVLSGGDPLLLPDDCLAGI 160

Query: 107 LNKRGFEIAVE 117
           L+       VE
Sbjct: 161 LSALSRIPHVE 171


>gi|149914618|ref|ZP_01903148.1| arginyl-tRNA-protein transferase [Roseobacter sp. AzwK-3b]
 gi|149811411|gb|EDM71246.1| arginyl-tRNA-protein transferase [Roseobacter sp. AzwK-3b]
          Length = 317

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119
             D++ D +++    G    R    TGGEP +  + + + +A  +RG+E+ + TN
Sbjct: 67  TADEVLDYLDQITERGW-PIREIGFTGGEPFMNPEMISMTRACLERGYEVLILTN 120


>gi|89093582|ref|ZP_01166530.1| molybdenum cofactor biosynthesis protein A [Oceanospirillum sp.
           MED92]
 gi|89082272|gb|EAR61496.1| molybdenum cofactor biosynthesis protein A [Oceanospirillum sp.
           MED92]
          Length = 334

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 13/96 (13%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            R S          DR   +C +C               +++++  +       G K+ R
Sbjct: 22  IRLS--------VTDRCDFRCVYC-MGEEMTFLPHAQVLSLEEIEQVAAAFVSLGVKKIR 72

Query: 87  YCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
              LTGGEPL++ + + LI+ + +   E+A+ TNG+
Sbjct: 73  ---LTGGEPLVRREVIKLIRGVGQLDAELAITTNGS 105


>gi|326391547|ref|ZP_08213079.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325992428|gb|EGD50888.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 453

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 20/105 (19%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C +C +T+  G +           + + I+ +           V 
Sbjct: 101 CNL-----------KCEYCIETEIQGFRRENMTNDTTKDIINWIQRKIDEKSYRILELVF 149

Query: 91  TGGEPLLQVDVPL-------IQALNKR-GFEIAVETNGTIEPPQG 127
            GGEPLL  D           + L K   F  ++ TNGTIE    
Sbjct: 150 YGGEPLLNKDPIFQICNYFYNETLKKNLTFSFSIITNGTIELSDD 194


>gi|260425941|ref|ZP_05779920.1| radical SAM domain protein [Citreicella sp. SE45]
 gi|260420433|gb|EEX13684.1| radical SAM domain protein [Citreicella sp. SE45]
          Length = 490

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 39/136 (28%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLADLIEEQWITGEKEGRY 87
           +GCNL            C +C   +       +KG +   +     IE          R 
Sbjct: 110 TGCNL-----------ACTYC---YKEDLAIPSKGEKMRFETAKASIELLLKQASGRDRI 155

Query: 88  -CVLTGGEPLLQVDVPLIQAL--------NKRGFEI--AVETNGTIEPPQGIDW------ 130
             V  GGEPL   ++PLI+ +         + G  +  ++ TN T+   + ++W      
Sbjct: 156 NVVFFGGEPL--SNMPLIREVVAYAEPRAAELGKVVDFSLTTNATLLTERMVEWFNAHRF 213

Query: 131 -ICVS---PKAGCDLK 142
            + VS   PKA  D+ 
Sbjct: 214 ALTVSMDGPKALHDVN 229


>gi|254166649|ref|ZP_04873503.1| Wyosine base formation family [Aciduliprofundum boonei T469]
 gi|197624259|gb|EDY36820.1| Wyosine base formation family [Aciduliprofundum boonei T469]
          Length = 229

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 74  IEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
           +E+     E       LTG EP L   +  LI+  +KRGF   + TNGT+ 
Sbjct: 33  LEKWKEAMEPRHVAISLTG-EPTLYPRLGELIEEYHKRGFTTFLVTNGTMP 82


>gi|160901857|ref|YP_001567438.1| molybdenum cofactor biosynthesis protein A [Petrotoga mobilis SJ95]
 gi|189028692|sp|A9BF51|MOAA_PETMO RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|160359501|gb|ABX31115.1| molybdenum cofactor biosynthesis protein A [Petrotoga mobilis SJ95]
          Length = 323

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 12/90 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QV 99
           DR + +C +C         T       +++  ++E     G K+ R   +TGGEPL+ Q 
Sbjct: 18  DRCNLRCIYCMPPQGVTFKTHSSILRYEEIIKIVEVGTELGIKKVR---ITGGEPLVRQG 74

Query: 100 DVPLIQALNKRGFEIAVE-----TNGTIEP 124
            V LI+ L K      +E     TNG + P
Sbjct: 75  VVNLIKELRKIP---ELEDITMTTNGVLLP 101


>gi|256826835|ref|YP_003150794.1| molybdenum cofactor biosynthesis protein A [Cryptobacterium curtum
           DSM 15641]
 gi|256582978|gb|ACU94112.1| molybdenum cofactor biosynthesis protein A [Cryptobacterium curtum
           DSM 15641]
          Length = 337

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 12/88 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR + +C +C      +      +   D +    +++    +  ++  +   LTGGEPL+
Sbjct: 18  DRCNLRCVYC------MPADGILQVPHDTILRYDEIVRFVQVAAQRGVQRVRLTGGEPLV 71

Query: 98  QVDVP-LIQALNK-RGF-EIAVETNGTI 122
           +  V  LI+ L+   G  +I++ TNG +
Sbjct: 72  RKGVAGLIERLSAIEGIDDISLTTNGVL 99


>gi|95928217|ref|ZP_01310965.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
 gi|95135488|gb|EAT17139.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
          Length = 369

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR C +D     G     +  ++   +I++     E      VL+
Sbjct: 21  CNLTC--------VHCR-CSSDMEAASGD----FTTEEAFKMIDDIC---EVSKPVMVLS 64

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPL++ D+  + +    +G  + + TNGT+
Sbjct: 65  GGEPLMRPDIFEIAEYGTSKGLRMCMATNGTL 96


>gi|108803860|ref|YP_643797.1| GTP cyclohydrolase subunit MoaA [Rubrobacter xylanophilus DSM 9941]
 gi|108765103|gb|ABG03985.1| GTP cyclohydrolase subunit MoaA [Rubrobacter xylanophilus DSM 9941]
          Length = 328

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 19/106 (17%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR + +C++C   D  F      K     ++++    E     G  + R   +TGGEPL+
Sbjct: 21  DRCNFRCQYCMPEDIKFQ----DKSHILTLEEMLTFAEACLALGVTKVR---VTGGEPLV 73

Query: 98  QVD-VPLIQALNKRGF-EIAVETNGTI-------EPPQGIDWICVS 134
           +   V  +  L + GF E+ + TNG +           G+D I +S
Sbjct: 74  RRGVVKFVGWLKELGFDEVTMTTNGYLLKENLEGLVEAGLDRINIS 119


>gi|304438574|ref|ZP_07398513.1| possible Fe-S oxidoreductase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304368412|gb|EFM22098.1| possible Fe-S oxidoreductase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 441

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104
            C  C   ++          +  ++A L+      G   G+    TGGE  L+ D   +I
Sbjct: 108 NCNHC---YMNAGKKPDNELSTKEIASLLYNFNKMG---GKVVTFTGGEATLRDDFFEII 161

Query: 105 QALNKRGFEIAVETNG 120
           +   + GF + + TNG
Sbjct: 162 KVAKEYGFTVCLLTNG 177


>gi|294789009|ref|ZP_06754249.1| molybdenum cofactor biosynthesis protein A [Simonsiella muelleri
           ATCC 29453]
 gi|294483111|gb|EFG30798.1| molybdenum cofactor biosynthesis protein A [Simonsiella muelleri
           ATCC 29453]
          Length = 324

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 22/170 (12%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D  + +C +C    +        + +   L ++     +  +   R   LTGGEP L+ D
Sbjct: 20  DLCNYRCNYC----LPNGYQGKAKPDELTLPEIETLVAVFAQNGTRKIRLTGGEPTLRAD 75

Query: 101 VPLIQALNKRGFEIA---VETN----GTIEP---PQGIDWICV---SPKAGCDLKIKGGQ 147
           +P I A  +   EI    + TN    G + P     G+D + V   S +     KI G  
Sbjct: 76  LPDIIAACRANPEIQHIALTTNAFKLGKLFPQYRVAGLDKLNVSIDSFQPETFHKITGKN 135

Query: 148 ELKLVFPQV-NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196
           E   +   +  +  + +         L       +E+    AI +    P
Sbjct: 136 ECHHILNDLEQILADGFNNIKINTLLL----KEHIEQTLPDAIEFVKTRP 181


>gi|283768557|ref|ZP_06341469.1| pyruvate formate-lyase 1-activating enzyme [Bulleidia extructa
           W1219]
 gi|283104949|gb|EFC06321.1| pyruvate formate-lyase 1-activating enzyme [Bulleidia extructa
           W1219]
          Length = 243

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 25/103 (24%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWI 79
            RF     GC +           +C +C       +  +G   + +++   A   +  W 
Sbjct: 20  VRFIVFMQGCPM-----------RCLYCHNPETW-KFKQGMEMSAEEVFRKAIRYQSYWK 67

Query: 80  TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
            G        ++GGE L Q+D  + L +  +K      ++T+G
Sbjct: 68  NGGG----ITVSGGEALAQIDFLIELFEICHKHHIHTTLDTSG 106


>gi|152977087|ref|YP_001376604.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|189028682|sp|A7GU01|MOAA_BACCN RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|152025839|gb|ABS23609.1| molybdenum cofactor biosynthesis protein A [Bacillus cytotoxicus
           NVH 391-98]
          Length = 337

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  +Q         D++  L +     G K+ R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPD--YAFLQEEF--LLTFDEIERLAKLFAGIGVKKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNG 120
           GEPLL+ D+P LI+ L    G   I + TNG
Sbjct: 75  GEPLLRKDLPKLIKRLASLDGITDIGLTTNG 105


>gi|224012289|ref|XP_002294797.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|224013668|ref|XP_002296498.1| pyruvate formate-lyase [Thalassiosira pseudonana CCMP1335]
 gi|220968850|gb|EED87194.1| pyruvate formate-lyase [Thalassiosira pseudonana CCMP1335]
 gi|220969236|gb|EED87577.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 247

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 36/185 (19%)

Query: 21  GRVA-VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQ-GTKGGRYNVDQLADLIE 75
           G    VF    GC           S +C +C   D   +           + +++ D+++
Sbjct: 16  GVRTLVF--LQGC-----------SKRCIYCSNPDAQCIVDPLKFPEVAISDEEVIDVLK 62

Query: 76  EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR------GFEIAVETNGTIEPPQGID 129
              +           +GG+PLLQ D   + A+ ++      G    ++T G    P+  D
Sbjct: 63  RYELFLSPNSGGVTFSGGDPLLQPD--FVNAVFEKAKDIGSGLTTCIDTAG-YGSPKIWD 119

Query: 130 WICVSPKAGCDLKIKGGQELKLVFPQVNVSP-ENYIGFDFERFSLQPMDGPFLEENTNLA 188
             C+ P     +    G +LKL      VS  +N    DF R            +N  L+
Sbjct: 120 -KCL-PNTDYVMLCIKGMDLKLASFISGVSKFQNECARDFARHI------RDHYKNIKLS 171

Query: 189 ISYCF 193
           I +  
Sbjct: 172 IRWVL 176


>gi|319789832|ref|YP_004151465.1| molybdenum cofactor biosynthesis protein A [Thermovibrio
           ammonificans HB-1]
 gi|317114334|gb|ADU96824.1| molybdenum cofactor biosynthesis protein A [Thermovibrio
           ammonificans HB-1]
          Length = 323

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +CR+C  + V            +++ ++++     G    R   LTG
Sbjct: 5   NYLRVSVTDRCNFRCRYCMPEGVREFIPHKELLTYEEITEIVKTFAQFGVNSVR---LTG 61

Query: 93  GEPLLQVDVP-LIQALNK 109
           GEPL++  V  L+  L++
Sbjct: 62  GEPLIRQGVENLVSLLSE 79


>gi|253582853|ref|ZP_04860072.1| molybdenum cofactor biosynthesis protein A [Fusobacterium varium
           ATCC 27725]
 gi|251835287|gb|EES63829.1| molybdenum cofactor biosynthesis protein A [Fusobacterium varium
           ATCC 27725]
          Length = 325

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 12/86 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C++C ++       K     V+++  ++      G K+ R   LTGGEPL++ +
Sbjct: 18  DRCNLRCQYCMSERNMNFLPKEELLTVEEIKRIVTIFSKIGIKKIR---LTGGEPLVRKN 74

Query: 101 -VPLIQALNKRGFEIAVE-----TNG 120
              +++ L+       +E     TNG
Sbjct: 75  FTEILENLHSIK---NIEEISMTTNG 97


>gi|212225023|ref|YP_002308259.1| anaerobic ribonucleoside-triphosphate reductase activating enzyme
           [Thermococcus onnurineus NA1]
 gi|212009980|gb|ACJ17362.1| anaerobic ribonucleoside-triphosphate reductase activating enzyme
           [Thermococcus onnurineus NA1]
          Length = 237

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 18/93 (19%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
             GCNL           +C FC            G + +++ A L E +  +   +  + 
Sbjct: 24  LCGCNL-----------KCPFC---HNWRIAGGKGCFELERGAMLEELEVNSFLIDYFHV 69

Query: 89  VLTGGEPLLQ--VDVPLIQALNKRGFEIAVETN 119
             TGGEPL+Q      L+ ++      +++ TN
Sbjct: 70  --TGGEPLMQWAELSSLLASVKALDVPVSLNTN 100


>gi|217032172|ref|ZP_03437671.1| hypothetical protein HPB128_186g38 [Helicobacter pylori B128]
 gi|216946162|gb|EEC24771.1| hypothetical protein HPB128_186g38 [Helicobacter pylori B128]
          Length = 269

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 55/162 (33%), Gaps = 31/162 (19%)

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIA--VETN 119
               +D + + ++     G K+ R   +TGGEPLL+      I  L+    E+A  + TN
Sbjct: 13  ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDEFIAKLHAYNKEVALVLSTN 69

Query: 120 GTIEPPQGIDW-------ICV---SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
           G +      D        + V   S K+   LKI     LK     +  S +  +     
Sbjct: 70  GFLLKKMAKDLKDAGLSRVNVSLDSLKSDRVLKISQKDALKNALEGIEESLKVGLKLKLN 129

Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
                 M     +E   L + Y              K I IR
Sbjct: 130 TVV---MKSVNDDEILEL-LEYAKN-----------KHIQIR 156


>gi|158521236|ref|YP_001529106.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158510062|gb|ABW67029.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 358

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 28/90 (31%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       R SA C           G   G  + +    L+++    G+      +LT
Sbjct: 29  CNLSC--RHCRASATC-----------GPYAGELDTEHSLQLLDQIAQVGK---PIIILT 72

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
           GGEPLL+ D+          FEIA  T+GT
Sbjct: 73  GGEPLLRPDI----------FEIA--THGT 90


>gi|296114296|ref|ZP_06832950.1| pyrroloquinoline quinone biosynthesis protein PqqE
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295979057|gb|EFG85781.1| pyrroloquinoline quinone biosynthesis protein PqqE
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 360

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R   QC +C          +       Q  D++++    G  +  +   +GGEP+ + D+
Sbjct: 10  RCPLQCPYCSNPMAL--EPRANELTTTQWIDILDQAADLGVLQVHF---SGGEPMARPDL 64

Query: 102 P-LIQALNKRGFEIAVETNGTIEPPQGI 128
           P LI+    RG    + T+G +  P   
Sbjct: 65  PDLIRHAVGRGLYTNLITSGVLMTPASF 92


>gi|284161695|ref|YP_003400318.1| radical SAM protein [Archaeoglobus profundus DSM 5631]
 gi|284011692|gb|ADB57645.1| Radical SAM domain protein [Archaeoglobus profundus DSM 5631]
          Length = 309

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 21/102 (20%)

Query: 31  GCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLA----DLIEEQWITGEKEG 85
           GCNL            C +C    +      K  +  +  L     +++++++++ +   
Sbjct: 56  GCNLHCKY--------C-WCWKMRYHSEDIKKSPKDVLRDLECRFDEVVKDKFVSKKGYR 106

Query: 86  RYCV-LTGGEPLLQVD-----VPLIQALNK-RGFEIAVETNG 120
              + +TG EP LQ D     + LI    + R F++ +ETNG
Sbjct: 107 IGVIRITGNEPSLQWDHVKEVLKLIDRSERLRSFKVIIETNG 148


>gi|291288384|ref|YP_003505200.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290885544|gb|ADD69244.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 315

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 18/123 (14%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDV 101
           +  C +C+         +  R+ N D +     E +   + +     +TG GEP L +D+
Sbjct: 35  TLNCIYCEVGRTTECTAERRRFENPDDILAEFRENYPHLKDDLDVVTITGAGEPTLNIDM 94

Query: 102 -PLIQALNKRG-FEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
             +I+ L +     +AV TN T+   + +                   EL +V P ++  
Sbjct: 95  GYIIKGLKEISEHPVAVLTNSTLLTDKNV--------------QAELMELDVVVPSLDAV 140

Query: 160 PEN 162
            E 
Sbjct: 141 SEE 143


>gi|56476667|ref|YP_158256.1| quinohemoprotein amine dehydrogenase, putative SAM-radical
           dependentactivating subunit [Aromatoleum aromaticum
           EbN1]
 gi|56312710|emb|CAI07355.1| quinohemoprotein amine dehydrogenase, putative SAM-radical
           dependentactivating subunit [Aromatoleum aromaticum
           EbN1]
          Length = 480

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 25/113 (22%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR-YC 88
           +GCNL            C +C         +KG + +++     +E     G K  R   
Sbjct: 113 TGCNL-----------SCTYCY-KEDLTTPSKGDKLSLETAKQGVELLLREGAKRDRVNV 160

Query: 89  VLTGGEPLLQVDVPLIQAL----------NKRGFEIAVETNGTIEPPQGIDWI 131
           V  GGEPL   ++P+I+A+            +G ++++ TN T+   + +D+ 
Sbjct: 161 VFFGGEPL--TNMPVIRAVTAYAEQRCREEGKGLDLSLTTNATLLTEEIVDYF 211


>gi|266624938|ref|ZP_06117873.1| putative pyruvate formate-lyase activating enzyme [Clostridium
           hathewayi DSM 13479]
 gi|288863176|gb|EFC95474.1| putative pyruvate formate-lyase activating enzyme [Clostridium
           hathewayi DSM 13479]
          Length = 279

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 41/124 (33%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCD---------TDFV--GIQGTKGGRYNVDQLAD 72
            VF    GC           S +C +C            ++  G +G  G  Y+  +L  
Sbjct: 24  TVF--LKGC-----------SIRCPWCSNPENLEPAIQRYIKDGNEGLYGRWYSSAELYQ 70

Query: 73  LI---EEQWITGEKEGRY------------CVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
            +   +E +I    E +                +GGE LLQ      +++ L+     I 
Sbjct: 71  EVIRDKEFYIGDITEYKITDPMMLDKLPGGVTFSGGECLLQMSELEDVLRRLHSEKIHIT 130

Query: 116 VETN 119
           +ET+
Sbjct: 131 IETS 134


>gi|260893438|ref|YP_003239535.1| molybdenum cofactor biosynthesis protein A [Ammonifex degensii KC4]
 gi|260865579|gb|ACX52685.1| molybdenum cofactor biosynthesis protein A [Ammonifex degensii KC4]
          Length = 316

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 70/183 (38%), Gaps = 31/183 (16%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +CR+C                 +++  +++     G ++ R   LTG
Sbjct: 4   NYLRVSVTDRCNLRCRYCLPPEGVKTVAHAEILRFEEIVRIVKAATRIGVRKVR---LTG 60

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVE--------TNGTIEPPQGIDW-------ICVSPK 136
           GEPL++ ++  L+  L        +E        TNG +   Q  +        + VS  
Sbjct: 61  GEPLVRRNLSSLVAQLAA------IEEIDDLALTTNGILLAEQAKELAAAGLRRVNVSLD 114

Query: 137 AGCDLKIK---GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                + +    G EL  V+  + ++ E  +G +  + ++  + G   +E   LA S   
Sbjct: 115 TLDPQRYRFITRGGELTRVWEGIELALE--LGLEPVKLNVVVIKGFNEDELVRLA-SLSL 171

Query: 194 QNP 196
           + P
Sbjct: 172 ERP 174


>gi|253700450|ref|YP_003021639.1| radical SAM protein [Geobacter sp. M21]
 gi|251775300|gb|ACT17881.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 445

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 27/102 (26%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE-KEGRYCVL 90
           CNL            C +C          +GG Y     ADL+ E  +     +G    L
Sbjct: 93  CNL-----------DCGYC-----YEGEFRGGHYMSSATADLLVETLLRERISKGWDVTL 136

Query: 91  T--GGEPLLQVDV------PLIQALNKRG--FEIAVETNGTI 122
           +  GGEPLL  D+      PL+QA    G  +   + TNGT+
Sbjct: 137 SFYGGEPLLSQDLIGRISAPLLQAARDHGVKYGFNLVTNGTL 178


>gi|115954674|ref|XP_001192785.1| PREDICTED: similar to MGC84142 protein, partial [Strongylocentrotus
           purpuratus]
          Length = 258

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 13/112 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       +R + +C++C  +       K    + +++  L +     G  + R   LTG
Sbjct: 65  NYLRISLTERCNLRCQYCMPEEGVTLSPKERLLSTEEILHLAKLFVSEGVDKIR---LTG 121

Query: 93  GEPLLQVDV-PLIQALNK-RGF-EIAVETNG-TIE------PPQGIDWICVS 134
           GEPL++ D+  +I+ L +  G  +IA+ TNG T+          G+D I +S
Sbjct: 122 GEPLVRKDIVEIIEGLRELEGLKQIAMTTNGVTLAKRLPALKKAGLDLINIS 173


>gi|320100217|ref|YP_004175809.1| Radical SAM domain-containing protein [Desulfurococcus mucosus DSM
           2162]
 gi|319752569|gb|ADV64327.1| Radical SAM domain protein [Desulfurococcus mucosus DSM 2162]
          Length = 563

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L +    +R +  C +C   F           +++Q+  ++      G        LTGG
Sbjct: 115 LVNMVVTNRCNLSCWYC--FFYSEAAGYVYEPSLEQIRGMVRSIKKQGVTVA--IQLTGG 170

Query: 94  EPLL-QVDVPLIQALNKRGFE-IAVETNG 120
           EPLL +  V +++ L + G   I + TNG
Sbjct: 171 EPLLREDLVDIVKLLREEGVRHIQLNTNG 199


>gi|312144555|ref|YP_003996001.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Halanaerobium sp. 'sapolanicus']
 gi|311905206|gb|ADQ15647.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Halanaerobium sp. 'sapolanicus']
          Length = 230

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 26/123 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF R  GCN   G   +                   +      +   D ++++    +  
Sbjct: 22  VFTR--GCNFKCGYCHNSQLIN-----------NKAEKENMPEEIFFDFLDKRQGLIDG- 67

Query: 85  GRYCVLTGGEPLLQVDVP-LIQALN-KRGFEIAVETNGT-------IEPPQGIDWICVSP 135
               V++GGEP LQ D+   I+ +  K   +I +++NG+       +     ID++ V  
Sbjct: 68  ---VVISGGEPTLQPDLKNFIKKIKRKHNLKIKLDSNGSNQRTIAELIKEDLIDYLAVDI 124

Query: 136 KAG 138
           K  
Sbjct: 125 KQS 127


>gi|197103746|ref|YP_002129123.1| molybdenum cofactor biosynthesis protein A [Phenylobacterium
           zucineum HLK1]
 gi|196477166|gb|ACG76694.1| molybdenum cofactor biosynthesis protein A [Phenylobacterium
           zucineum HLK1]
          Length = 341

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 20/149 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          K     +++L  +       G ++ R   LTGGEPL++  
Sbjct: 31  DRCDLRCVYC-MAEHMTFLPKAQVLTLEELDRIASAFVALGVRKLR---LTGGEPLVRKG 86

Query: 101 V-PLIQAL---NKRGF--EIAVETNGT-------IEPPQGIDWICVS---PKAGCDLKIK 144
           V  LI+AL      G   E+ + TNGT            G+  + VS    K     ++ 
Sbjct: 87  VMELIEALSRHLASGALSELTLTTNGTQLAGFAPRLAAAGVRRVNVSLDTLKPDLFRRLT 146

Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSL 173
            G +L  V   +  +    +       +L
Sbjct: 147 RGGDLSKVLAGIEAAQAAGLSVKINAVAL 175


>gi|149375808|ref|ZP_01893576.1| pyrroloquinoline quinone biosynthesis protein PqqE [Marinobacter
           algicola DG893]
 gi|149359933|gb|EDM48389.1| pyrroloquinoline quinone biosynthesis protein PqqE [Marinobacter
           algicola DG893]
          Length = 384

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF   Q         ++   ++ +    G  +  +  
Sbjct: 18  PLWLLAELTYRCPLQCPYCSNPLDFAQTQ----QELTTEEWTRVLRQGREMGAAQLGF-- 71

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
            +GGEPL+ Q    LI    + G+   + T+G
Sbjct: 72  -SGGEPLVRQDLPELIAEARQLGYYTNLITSG 102


>gi|332178834|gb|AEE14523.1| Radical SAM domain protein [Thermodesulfobium narugense DSM 14796]
          Length = 344

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 22/98 (22%)

Query: 32  CNLWSGREQDRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           CNL           +CR C      T+           Y+     DLI E  I  + E  
Sbjct: 16  CNL-----------RCRHCYQENQKTELKFDDWENFFSYS----KDLIREWEIKYDIEIP 60

Query: 87  YCV-LTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           + + LTGGEP L+ D   +++ LN+   E  + TNGT+
Sbjct: 61  FLIKLTGGEPFLREDFFEIVKFLNEIDIEPYILTNGTL 98


>gi|261368993|ref|ZP_05981876.1| radical SAM domain protein [Subdoligranulum variabile DSM 15176]
 gi|282568859|gb|EFB74394.1| radical SAM domain protein [Subdoligranulum variabile DSM 15176]
          Length = 452

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 44/130 (33%), Gaps = 41/130 (31%)

Query: 21  GRVAVFCR-------FSG------------CNLWSGREQDRLSA---QCRFCDTDFVGIQ 58
           G    F R         G            CN+      D  SA    C  C        
Sbjct: 77  GVRQAFFRNFILNASLQGSARQEEVSARENCNVPWAILLDPTSACNMHCTGC------WA 130

Query: 59  GTKGGRYNV--DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
              G R N+  ++L  ++ +    G       + TGGEPL++     + AL ++  +   
Sbjct: 131 AEYGNRLNLTFEELDSIVTQGKELGTYMY---IFTGGEPLVRKKD--VIALCEKHSDC-- 183

Query: 117 E----TNGTI 122
           E    TNGT+
Sbjct: 184 EFLSFTNGTL 193


>gi|146329598|ref|YP_001210199.1| pyruvate formate-lyase activating enzyme [Dichelobacter nodosus
           VCS1703A]
 gi|146233068|gb|ABQ14046.1| pyruvate formate-lyase activating enzyme [Dichelobacter nodosus
           VCS1703A]
          Length = 249

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 26/152 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   D+  +     K     V +L   I+         G
Sbjct: 28  FQGC-----------LMRCLYCHNRDSWPLTTD--KSEVTTVSKLMQEIKTYQHYLRASG 74

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGT-----IEPPQGIDWICVSPKAG 138
                +GGEPLLQ         A  +      ++TNG       +  + +D   +     
Sbjct: 75  GGVTASGGEPLLQHAFIADWFTACQEMNLHTCLDTNGFARQYDHDLIRLLDHTDL---VM 131

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
            DLK    ++ K++    N    N+  +  ER
Sbjct: 132 LDLKQINPEKHKVLVGVPNDKTLNFARYLQER 163


>gi|26248881|ref|NP_754921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           CFT073]
 gi|227887552|ref|ZP_04005357.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972]
 gi|300981979|ref|ZP_07175825.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1]
 gi|301047150|ref|ZP_07194245.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1]
 gi|81475264|sp|Q8FF55|RLMN_ECOL6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|26109287|gb|AAN81489.1|AE016764_171 Hypothetical protein yfgB [Escherichia coli CFT073]
 gi|227835902|gb|EEJ46368.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972]
 gi|300300936|gb|EFJ57321.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1]
 gi|300408874|gb|EFJ92412.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1]
 gi|307554540|gb|ADN47315.1| radical SAM enzyme [Escherichia coli ABU 83972]
 gi|315292442|gb|EFU51794.1| radical SAM enzyme, Cfr family [Escherichia coli MS 153-1]
          Length = 384

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N            R  L    G        + I Y  
Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYL----GKSNANQGRVTIEYVM 281


>gi|326204018|ref|ZP_08193879.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325985785|gb|EGD46620.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 471

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 32/116 (27%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGI------QGTKGGRYNVDQLADLIEEQWITGEKEG 85
           CNL            C++C   F G          +  R  +D+L   + E +    K+ 
Sbjct: 92  CNL-----------NCQYC---FAGGGNNYSGDRPEFDRERIDRLLHFVYEDYFKDYKKF 137

Query: 86  RYCVLTGGEPLLQVDVPLIQALNKRGFEI----------AVETNGTIEPPQGIDWI 131
           R+  ++GGEPLL  +   I+ L +R  EI           + TNGT+   + ID++
Sbjct: 138 RFDFVSGGEPLL--NFEAIRYLVERVREIDGRKQSKSSFFLVTNGTLITDEIIDYL 191


>gi|256825735|ref|YP_003149695.1| GTP cyclohydrolase subunit MoaA [Kytococcus sedentarius DSM 20547]
 gi|256689128|gb|ACV06930.1| GTP cyclohydrolase subunit MoaA [Kytococcus sedentarius DSM 20547]
          Length = 333

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 15/89 (16%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV---LTGGEPLL 97
           D+ + +C +C      +          D+L    E + I             LTGGEPLL
Sbjct: 23  DKCNLRCTYC------LPAEGVPWMAKDELLSREELRAIAAVAVASGITEIRLTGGEPLL 76

Query: 98  QVDVP-LIQAL-----NKRGFEIAVETNG 120
           + D+  L+  L          E+++ TNG
Sbjct: 77  RPDLEDLVADLASLEGEDGPVELSMTTNG 105


>gi|227514963|ref|ZP_03945012.1| molybdenum (Mo2+) cofactor biosynthesis enzyme [Lactobacillus
           fermentum ATCC 14931]
 gi|227086662|gb|EEI21974.1| molybdenum (Mo2+) cofactor biosynthesis enzyme [Lactobacillus
           fermentum ATCC 14931]
          Length = 332

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C     G+      R  + D++  LI      G  + R   +TGGEPLL+ 
Sbjct: 21  DRCNLRCVYC-MPKEGLPFFPTDRVLSQDEIVQLITNFAQLGVHKVR---ITGGEPLLRT 76

Query: 100 D-VPLIQALNKR-GFE-IAVETNG 120
           D V +++ + +  G E +++ TNG
Sbjct: 77  DVVDIVRRIKEIDGIEDVSITTNG 100


>gi|158423054|ref|YP_001524346.1| molybdenum cofactor biosynthesis protein A [Azorhizobium
           caulinodans ORS 571]
 gi|158329943|dbj|BAF87428.1| molybdenum cofactor biosynthesis protein A [Azorhizobium
           caulinodans ORS 571]
          Length = 333

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 16/91 (17%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  FV     +     +++L  L       G  + R   LTGGEPL+
Sbjct: 23  DRCDLRCVYCMAEDMAFV----PRNQLLTLEELDRLASAFVARGVAKIR---LTGGEPLV 75

Query: 98  QV-DVPLIQAL-----NKRGFEIAVETNGTI 122
           +   + L+ +L      +R  E+ + TNG++
Sbjct: 76  RKGLMELVSSLSRHLAARRLKELTLTTNGSL 106


>gi|149909997|ref|ZP_01898646.1| putative pyruvate formate-lyase 1 activating enzyme [Moritella sp.
           PE36]
 gi|149807011|gb|EDM66970.1| putative pyruvate formate-lyase 1 activating enzyme [Moritella sp.
           PE36]
          Length = 258

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 39/120 (32%), Gaps = 27/120 (22%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G  +     VF    GC             +C +C   D+         G
Sbjct: 22  TESFGSVDGPGIRYI----VFM--QGC-----------LMRCLYCHNRDS----WDLHSG 60

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
               VD+L   +          G     +GGE +LQ +       A    G    ++TNG
Sbjct: 61  KDTTVDELIRELISYKAFMLATGGGVTASGGEAMLQPEFVRDFFTAAQAEGVNTCLDTNG 120


>gi|16554488|ref|NP_444212.1| Fe-S oxidoreductase involved in heme biosynthesis [Halobacterium
           sp. NRC-1]
 gi|169235985|ref|YP_001689185.1| coenzyme PQQ synthesis protein E [Halobacterium salinarum R1]
 gi|167727051|emb|CAP13836.1| homolog to coenzyme PQQ synthesis protein E [Halobacterium
           salinarum R1]
          Length = 401

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 27/97 (27%)

Query: 32  CNLWSGREQDRLSAQCRFC----DTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGR 86
           CNL+           C  C    DT+    +  T  G+  +D LAD              
Sbjct: 49  CNLY-----------CSHCYAAADTETAPGELSTAEGKALLDDLAD----------FGIP 87

Query: 87  YCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
             + +GGEP+++ D+  LI   +  G    + TNGT+
Sbjct: 88  VVLFSGGEPMVRDDLEELIAYADDNGIRPVLSTNGTL 124


>gi|17228226|ref|NP_484774.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Nostoc sp. PCC 7120]
 gi|17130076|dbj|BAB72688.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Nostoc sp. PCC 7120]
          Length = 207

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 20/96 (20%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           G  AV     GC             +C  C                +  +  L+E+  I 
Sbjct: 35  GCRAV-VWVQGCP-----------RECPGC----FNPDSWTFEINQLVSVDSLVEQ--IL 76

Query: 81  GEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
            + + +    +GGEP  Q      L + L   G  +
Sbjct: 77  SKPQNQGVTFSGGEPFHQAIALAELARKLKAAGLSV 112


>gi|319400639|gb|EFV88864.1| molybdenum cofactor biosynthesis protein A [Staphylococcus
           epidermidis FRI909]
          Length = 340

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 24/94 (25%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D D+  +   K      ++L  + +     G K+ R   +TGG
Sbjct: 22  DRCNFRCDYCMPKEIFGD-DYTFL--PKDELLTFEELTRISKIYAQLGVKKIR---ITGG 75

Query: 94  EPLLQVD-------VPLIQALNKRGFEIAVETNG 120
           EPLL+ +       + LI  +   G      TNG
Sbjct: 76  EPLLRRNLYKLIEQLNLIDGIEDIGLT----TNG 105


>gi|320108498|ref|YP_004184088.1| Radical SAM domain-containing protein [Terriglobus saanensis
           SP1PR4]
 gi|319927019|gb|ADV84094.1| Radical SAM domain protein [Terriglobus saanensis SP1PR4]
          Length = 352

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 27/143 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C               +   + ++       G        ++
Sbjct: 55  CNL-----------ACTYC--------NEYDDHSDPTPIEEMERRIDHLGRLGTSVITIS 95

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
           GGEPLL  D+  +I  + K G    + TNG +     I+ +    KAG D        + 
Sbjct: 96  GGEPLLHPDLDRVIARIRKTGAIAGMITNGYLLNKDRIERLN---KAGLDHMQIS---ID 149

Query: 151 LVFPQVNVSPENYIGFDFERFSL 173
            V P  +VS ++    D     L
Sbjct: 150 NVMPD-DVSKKSLKVLDQRLIWL 171


>gi|297527099|ref|YP_003669123.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297256015|gb|ADI32224.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 342

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY--NVDQLADLIEEQWITGEKEGRYCVL 90
           N+   R        C FC  D       +   +  + D + +   E            + 
Sbjct: 33  NVLQVRPTTLCPLNCIFCSVDAGPHSRNRQAEFMVDPDSIYEATLEIARFKGGGVEALID 92

Query: 91  TGGEPLLQVDVP-LIQALNKRGF--EIAVETNGTIEPPQGID 129
           T G+PL    +  L++ L +  +   IA+ET+G +   + ID
Sbjct: 93  TVGDPLTYPYITYLVKKLKRNPYISSIALETHGALLSHRLID 134


>gi|242243931|ref|ZP_04798374.1| molybdenum (Mo2+) cofactor biosynthesis protein A [Staphylococcus
           epidermidis W23144]
 gi|242232564|gb|EES34876.1| molybdenum (Mo2+) cofactor biosynthesis protein A [Staphylococcus
           epidermidis W23144]
          Length = 340

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 24/94 (25%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D D+  +   K      ++L  + +     G K+ R   +TGG
Sbjct: 22  DRCNFRCDYCMPKEIFGD-DYTFL--PKDELLTFEELTRISKIYAQLGVKKIR---ITGG 75

Query: 94  EPLLQVD-------VPLIQALNKRGFEIAVETNG 120
           EPLL+ +       + LI  +   G      TNG
Sbjct: 76  EPLLRRNLYKLVEQLNLIDGIEDIGLT----TNG 105


>gi|153853323|ref|ZP_01994732.1| hypothetical protein DORLON_00719 [Dorea longicatena DSM 13814]
 gi|149754109|gb|EDM64040.1| hypothetical protein DORLON_00719 [Dorea longicatena DSM 13814]
          Length = 203

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117
           G  Y  D+L   I++ W      G      ++GGEPLLQ+D  + L Q   +RG    ++
Sbjct: 4   GTLYTADEL---IDKAWKYRTYWGSKGGITVSGGEPLLQIDFLLELFQKAKERGINTTLD 60

Query: 118 TNG 120
           T G
Sbjct: 61  TCG 63


>gi|39997200|ref|NP_953151.1| pyruvate formate-lyase-activating enzyme [Geobacter sulfurreducens
           PCA]
 gi|39984090|gb|AAR35478.1| pyruvate formate-lyase-activating enzyme, putative [Geobacter
           sulfurreducens PCA]
          Length = 298

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 45/128 (35%), Gaps = 6/128 (4%)

Query: 32  CNLWSGREQDRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
           C   +        A C  C    D    G +   G    V  +   + +  I  E+ G  
Sbjct: 66  CPHGTAGRGQGREAACLICGRCADACPTGARRLAGTEMTVADVLAALLKDRIFYEESGGG 125

Query: 88  CVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
              +GGEPL Q      L+    +RG   AV+T G     Q ++    +     DLK+  
Sbjct: 126 ATFSGGEPLCQPGFLKALLAGCRERGIRTAVDTGGFAPRDQFLEVATAADLILYDLKLMD 185

Query: 146 GQELKLVF 153
            +  + V 
Sbjct: 186 AERHRAVV 193


>gi|312868229|ref|ZP_07728429.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           parasanguinis F0405]
 gi|311095974|gb|EFQ54218.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           parasanguinis F0405]
          Length = 264

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 21/99 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT +         R   D L + +  +   G
Sbjct: 33  VF--LQGC-----------QMRCQYCHNPDT-WAMETNKSRERTVDDVLEEALRYRGFWG 78

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           EK G    ++GGE LLQ+D  + L     + G    ++T
Sbjct: 79  EKGG--ITVSGGEALLQIDFLIALFTKAQELGIHCTLDT 115


>gi|298251942|ref|ZP_06975745.1| molybdenum cofactor biosynthesis protein A [Ktedonobacter racemifer
           DSM 44963]
 gi|297546534|gb|EFH80402.1| molybdenum cofactor biosynthesis protein A [Ktedonobacter racemifer
           DSM 44963]
          Length = 331

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 15/105 (14%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           D+ + +C +C    +  +G     +  +    +L+    +          LTGGEPL++ 
Sbjct: 21  DKCNFRCTYC----MPAEGLPWLKKAEILSYEELMRISRVAVSMGIEQIRLTGGEPLVRR 76

Query: 100 DVP-LIQALNK-RGFE-IAVETNGTIEP-------PQGIDWICVS 134
           D+P L+  L++  G   +++ TNG + P         G+  I VS
Sbjct: 77  DLPELVHQLHELEGLRSLSLTTNGILLPQQAKALAEAGLTRINVS 121


>gi|153003060|ref|YP_001377385.1| radical SAM domain-containing protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152026633|gb|ABS24401.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 608

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 14/83 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         SA      T +V            D+   L+E               +
Sbjct: 196 CNLSCPICFANASA------TGYVC-------EPTFDEAVALLERLRAYRPVPATAVQFS 242

Query: 92  GGEPLLQVD-VPLIQALNKRGFE 113
           GGEP L  D + L++  N+ GF 
Sbjct: 243 GGEPTLHPDFLALVRRANELGFS 265


>gi|73541963|ref|YP_296483.1| molybdenum cofactor biosynthesis protein A [Ralstonia eutropha
           JMP134]
 gi|72119376|gb|AAZ61639.1| GTP cyclohydrolase subunit MoaA [Ralstonia eutropha JMP134]
          Length = 396

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 57/142 (40%), Gaps = 25/142 (17%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +  +     + +++          G ++ R   LTGGE
Sbjct: 73  DRCNFRCVYCMPKEVFDKDYTFLPHS--ELLSFEEIERTARLFVSLGVEKIR---LTGGE 127

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ ++  L++ L +      +  ++ + TN ++           G+  + VS  A  D
Sbjct: 128 PLLRKNIEKLVEMLARIDTVSGKPLDLTLTTNASLLARKAQSLRDAGLRRVSVSLDAIDD 187

Query: 141 LKIKGGQELKLVFPQVNVSPEN 162
           +  +   ++      V    E 
Sbjct: 188 VTFRRMNDVDFAVADVLHGIET 209


>gi|319765567|ref|YP_004131068.1| YfkB-like domain-containing protein [Geobacillus sp. Y412MC52]
 gi|317110433|gb|ADU92925.1| YfkB-like domain-containing protein [Geobacillus sp. Y412MC52]
          Length = 374

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 12/86 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99
           +C  C   +            +D L   +EE         R   +TGGEP+L      Q 
Sbjct: 44  RCEHCAVGYTLTMKDP-EALPLDMLLRRLEEI-----PHLRSLSITGGEPMLSLKSVEQY 97

Query: 100 DVPLIQALNKRGFEIAVETNGTIEPP 125
            VPL++  ++RG    + +N T++  
Sbjct: 98  VVPLLRYAHERGVRTQLNSNLTLDLS 123


>gi|261418751|ref|YP_003252433.1| YfkB-like domain protein [Geobacillus sp. Y412MC61]
 gi|261375208|gb|ACX77951.1| YfkB-like domain protein [Geobacillus sp. Y412MC61]
          Length = 387

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 12/86 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99
           +C  C   +            +D L   +EE         R   +TGGEP+L      Q 
Sbjct: 57  RCEHCAVGYTLTMKDP-EALPLDMLLRRLEEI-----PHLRSLSITGGEPMLSLKSVEQY 110

Query: 100 DVPLIQALNKRGFEIAVETNGTIEPP 125
            VPL++  ++RG    + +N T++  
Sbjct: 111 VVPLLRYAHERGVRTQLNSNLTLDLS 136


>gi|167949588|ref|ZP_02536662.1| putative pyruvate radical-activating enzyme [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 215

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 25/96 (26%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +FC   GC             +C +C   D     +      +   DQ+   ++ +    
Sbjct: 41  IFC--QGCP-----------WRCHYCHNPD----LLPRQGEQQIPWDQILAFLQTRRGLL 83

Query: 82  EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAV 116
           +      V +GGEP LQ  +P  I  +   GF++ +
Sbjct: 84  DA----VVFSGGEPTLQRGLPDAIGQVKAMGFKVGL 115


>gi|159041665|ref|YP_001540917.1| radical SAM domain-containing protein [Caldivirga maquilingensis
           IC-167]
 gi|157920500|gb|ABW01927.1| Radical SAM domain protein [Caldivirga maquilingensis IC-167]
          Length = 501

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 18/90 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   +            +++   +++E    G        L+
Sbjct: 141 CNL-----------KCIHC---YQNAGRPLPNELTLEEKLRVVKELDEAGVPA---IALS 183

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           GGEP +  D + ++  +N+RGF  AV TNG
Sbjct: 184 GGEPTIHPDFLTVLNEMNRRGFYSAVATNG 213


>gi|56418960|ref|YP_146278.1| hypothetical protein GK0425 [Geobacillus kaustophilus HTA426]
 gi|56378802|dbj|BAD74710.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 374

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 12/86 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99
           +C  C   +            +D L   +EE         R   +TGGEP+L      Q 
Sbjct: 44  RCEHCAVGYTLTMKDP-EALPLDMLLRRLEEI-----PHLRSLSITGGEPMLSLKSVEQY 97

Query: 100 DVPLIQALNKRGFEIAVETNGTIEPP 125
            VPL++  ++RG    + +N T++  
Sbjct: 98  VVPLLRYAHERGVRTQLNSNLTLDLS 123


>gi|327400827|ref|YP_004341666.1| Radical SAM domain-containing protein [Archaeoglobus veneficus
           SNP6]
 gi|327316335|gb|AEA46951.1| Radical SAM domain protein [Archaeoglobus veneficus SNP6]
          Length = 386

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 18/95 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   +    G+K    + ++    I++       +    + +
Sbjct: 49  CNL-----------KCVHC---YAN-AGSKSDELSTEEAKAFIDDL---ASIKAPVLLFS 90

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQ 126
           GGEPLL+ D+  + A   +    ++ TNGT+  P+
Sbjct: 91  GGEPLLRHDIFELAAYASKRIACSLSTNGTLITPE 125


>gi|325298763|ref|YP_004258680.1| Radical SAM domain-containing protein [Bacteroides salanitronis DSM
           18170]
 gi|324318316|gb|ADY36207.1| Radical SAM domain protein [Bacteroides salanitronis DSM 18170]
          Length = 359

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 14/98 (14%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR C +D   I G +      +    +++      +    + +LT
Sbjct: 40  CNL-----------HCRHCGSDCKKIAGYRD--MPKEDFLRVLDNVASHTDPHKVFIILT 86

Query: 92  GGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQGI 128
           GGEPL++ D+    +A+ ++GF   + TNG    P+ +
Sbjct: 87  GGEPLVREDLEACGRAIYEKGFPWGMVTNGLFLTPERL 124


>gi|307331899|ref|ZP_07610996.1| Radical SAM domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306882464|gb|EFN13553.1| Radical SAM domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 386

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 19/98 (19%)

Query: 41  DRLSAQCRFCDTDFVGIQGTK-----GGRYNVD---QLADLIEEQWITGEKEGRYCVLTG 92
           +R +  C +C   +V     +       R +++     A  I E          + VL G
Sbjct: 19  NRCNIDCDYC---YVFNSKDQSSRHLPARMSLEVARATAQRIGEHAAANGMREVHVVLHG 75

Query: 93  GEPLL---QVDVPLIQALNKR-----GFEIAVETNGTI 122
           GEPLL   Q    L+  + +           ++TNGT+
Sbjct: 76  GEPLLAGPQHMAGLLSTVLEAIPPTTDVRFELQTNGTL 113


>gi|253996369|ref|YP_003048433.1| pyrroloquinoline quinone biosynthesis protein PqqE [Methylotenera
           mobilis JLW8]
 gi|253983048|gb|ACT47906.1| coenzyme PQQ biosynthesis protein E [Methylotenera mobilis JLW8]
          Length = 411

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 10/92 (10%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R    C FC   TD+             +Q    + +    G  +     
Sbjct: 34  PLWLLAEVTYRCPLHCAFCYNPTDY---DKHTQNELTTEQWIQALRDARKLGAIQLG--- 87

Query: 90  LTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           ++GGEPLL+ D+  ++    K G+   + T+G
Sbjct: 88  ISGGEPLLRDDIEEIVVEARKLGYYSNLITSG 119


>gi|116754972|ref|YP_844090.1| radical SAM domain-containing protein [Methanosaeta thermophila PT]
 gi|116666423|gb|ABK15450.1| Radical SAM domain protein [Methanosaeta thermophila PT]
          Length = 472

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L +     R +  C  C   F      K     ++Q+  +++               +GG
Sbjct: 61  LANIDVTTRCNLSCPIC---FADASPKKVYEPTMEQIERMLKILREERPVPCYAVQFSGG 117

Query: 94  EPLLQVDVPLIQAL-NKRGF-EIAVETNG 120
           EP ++ D+P + AL    GF +I + TNG
Sbjct: 118 EPTVRDDLPEMVALARSMGFTQIQIATNG 146


>gi|269121625|ref|YP_003309802.1| glycyl-radical enzyme activating protein family [Sebaldella
           termitidis ATCC 33386]
 gi|268615503|gb|ACZ09871.1| glycyl-radical enzyme activating protein family [Sebaldella
           termitidis ATCC 33386]
          Length = 260

 Score = 39.6 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 28/111 (25%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK-------------GGRYNVDQL 70
            VF  F GC L            C +C          +             G    V+++
Sbjct: 26  TVF--FKGCPL-----------NCMWCSNPESQSFKPEPIWDKIKKDYIITGECKTVEEI 72

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
            ++I +      +      L+GGE L   +    L++   K     A ET+
Sbjct: 73  MEIILKDMDYYIESEGGVTLSGGEVLSHPEFAAELLKECKKHNIHTACETS 123


>gi|51245133|ref|YP_065017.1| coenzyme PQQ synthesis protein [Desulfotalea psychrophila LSv54]
 gi|50876170|emb|CAG36010.1| related to coenzyme PQQ synthesis protein [Desulfotalea
           psychrophila LSv54]
          Length = 352

 Score = 39.6 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 20/103 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR        +       +++ +   +I++            VL+
Sbjct: 16  CNLKC--------VHCR----SSSELDVVAHPDFSLQEAKQIIDK---ITSYAKPVLVLS 60

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICV 133
           GGEPLL+ D+  + Q    +G  + + TNGT+      D +C+
Sbjct: 61  GGEPLLREDIFDIAQYGTDQGLRMCLATNGTLV----TDEVCL 99


>gi|297531281|ref|YP_003672556.1| YfkB-like domain protein [Geobacillus sp. C56-T3]
 gi|297254533|gb|ADI27979.1| YfkB-like domain protein [Geobacillus sp. C56-T3]
          Length = 374

 Score = 39.6 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 12/86 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99
           +C  C   +            +D L   +EE         R   +TGGEP+L      Q 
Sbjct: 44  RCEHCAVGYTLTMKDP-EALPLDMLLRRLEEI-----PHLRSLSITGGEPMLSLKSVEQY 97

Query: 100 DVPLIQALNKRGFEIAVETNGTIEPP 125
            VPL++  ++RG    + +N T++  
Sbjct: 98  VVPLLRYAHERGVRTQLNSNLTLDLS 123


>gi|184155556|ref|YP_001843896.1| molybdenum cofactor biosynthesis protein A [Lactobacillus fermentum
           IFO 3956]
 gi|260662959|ref|ZP_05863852.1| molybdenum cofactor biosynthesis protein A [Lactobacillus fermentum
           28-3-CHN]
 gi|226704822|sp|B2GCN4|MOAA_LACF3 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|183226900|dbj|BAG27416.1| molybdopterin precursor synthase MoaA [Lactobacillus fermentum IFO
           3956]
 gi|260552580|gb|EEX25580.1| molybdenum cofactor biosynthesis protein A [Lactobacillus fermentum
           28-3-CHN]
          Length = 332

 Score = 39.6 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C     G+      R  + D++  LI      G  + R   +TGGEPLL+ 
Sbjct: 21  DRCNLRCVYC-MPKEGLPFFPTDRVLSQDEIVQLITNFAQLGVHKVR---ITGGEPLLRT 76

Query: 100 D-VPLIQALNKR-GFE-IAVETNG 120
           D V +++ + +  G E +++ TNG
Sbjct: 77  DVVDIVRRIKEIDGIEDVSITTNG 100


>gi|95929921|ref|ZP_01312661.1| molybdenum cofactor synthesis-like [Desulfuromonas acetoxidans DSM
           684]
 gi|95133890|gb|EAT15549.1| molybdenum cofactor synthesis-like [Desulfuromonas acetoxidans DSM
           684]
          Length = 325

 Score = 39.6 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +CR+C       + T     + ++L  + +    TG ++ R   +TG
Sbjct: 12  NYLRLSVTDRCNMRCRYCMPAHGVEKVTHDDVLSYEELYRISQAAVTTGIEKIR---VTG 68

Query: 93  GEPLLQVDV-PLIQALNKRG--FEIAVETNG 120
           GEPL++  + P ++ L++     ++ + TNG
Sbjct: 69  GEPLVRKGIVPFLERLSRIDGLKQLVLTTNG 99


>gi|258406073|ref|YP_003198815.1| Radical SAM domain-containing protein [Desulfohalobium retbaense
           DSM 5692]
 gi|257798300|gb|ACV69237.1| Radical SAM domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 394

 Score = 39.6 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 19/96 (19%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
              CNL           +C  C   +   I        + DQ   +I++           
Sbjct: 47  TQRCNL-----------KCVHC---YAQAIDPEGKDEISTDQGKAIIDDL---AAFGAPV 89

Query: 88  CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
            + +GGEPL++ D+P L      +G    + TNGT+
Sbjct: 90  MLFSGGEPLVRKDLPELASYAVSKGMRAVISTNGTL 125


>gi|256398061|ref|YP_003119625.1| radical SAM domain-containing protein [Catenulispora acidiphila DSM
           44928]
 gi|256364287|gb|ACU77784.1| Radical SAM domain protein [Catenulispora acidiphila DSM 44928]
          Length = 370

 Score = 39.6 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 7/77 (9%)

Query: 46  QCRFCDTDFVGIQGTKGG-RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-L 103
           +CR C   +VG          +++    +++   ITG  +  Y +  GGEP +   +P +
Sbjct: 35  RCRHC---YVGNDRLNAANTMSLELAIQIMDYFKITGGHDKVYLL--GGEPTMHPQLPEM 89

Query: 104 IQALNKRGFEIAVETNG 120
           + A  +R +++ + +NG
Sbjct: 90  VTAARERDYQVTISSNG 106


>gi|225568820|ref|ZP_03777845.1| hypothetical protein CLOHYLEM_04899 [Clostridium hylemonae DSM
           15053]
 gi|225162319|gb|EEG74938.1| hypothetical protein CLOHYLEM_04899 [Clostridium hylemonae DSM
           15053]
          Length = 360

 Score = 39.6 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 25/97 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       R +A C           G    +    Q  ++  +    G     + +L 
Sbjct: 71  CNLHCQGCYARANASC---------TDGGGQAQLTAAQWGEIFCQAGELGVA---FILLA 118

Query: 92  GGEPLLQVDVPLIQALNKRG------FEIAVETNGTI 122
           GGEPLL+ DV     L + G      F +   TNGT+
Sbjct: 119 GGEPLLRRDV-----LAEAGRHRRILFPVF--TNGTM 148


>gi|229915846|ref|YP_002884492.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Exiguobacterium sp. AT1b]
 gi|229467275|gb|ACQ69047.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Exiguobacterium sp. AT1b]
          Length = 152

 Score = 39.6 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 28/131 (21%)

Query: 1   MKLYSIKEIFLTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           M++ S+ E   ++  G G       +F   +GC              C+ C         
Sbjct: 2   MRILSVVE--ESVVDGPGIRT---VIF--TAGCP-----------HHCKGC----HNPSS 39

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVE 117
                    ++ +L++   ++G        ++GGEP LQ      L+ A    G  + V 
Sbjct: 40  WNPAGGEEVEVEELVQRVKLSGWDG---VTISGGEPFLQSSALAKLVTACKSLGKNVWVY 96

Query: 118 TNGTIEPPQGI 128
           T  T+E  + +
Sbjct: 97  TGYTLEQLEAM 107


>gi|302349096|ref|YP_003816734.1| Heme biosynthesis protein [Acidilobus saccharovorans 345-15]
 gi|302329508|gb|ADL19703.1| Heme biosynthesis protein [Acidilobus saccharovorans 345-15]
          Length = 386

 Score = 39.6 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   ++          + ++ +    E    G    R   + 
Sbjct: 55  CNL-----------RCLHC---YISADKPLPDELSYEEWSRAFSELVDLG---TRVLYIL 97

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEP+L+ D+  +I + +  G ++++ TNGT+
Sbjct: 98  GGEPMLRRDIYDIISSASGLGMKVSMSTNGTL 129


>gi|288561221|ref|YP_003424707.1| pyruvate formate-lyase-activating enzyme PflA2 [Methanobrevibacter
           ruminantium M1]
 gi|288543931|gb|ADC47815.1| pyruvate formate-lyase-activating enzyme PflA2 [Methanobrevibacter
           ruminantium M1]
          Length = 447

 Score = 39.6 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 23/131 (17%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GC L           +C +C   F      +   Y VD+L + ++   I     G   V 
Sbjct: 31  GCPL-----------RCAYCFNPFSWDGSLEPKTYAVDELYEEVKRDNIYFLSTGGGLVF 79

Query: 91  TGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI------EPPQGIDWICVS----PKAG 138
            GGEPLL  +     I+     G++  +ET+ ++      +    ID+  V      K  
Sbjct: 80  GGGEPLLYHEFIKEFIKKYKSTGWKFTLETSLSVKKDILRDIIDYIDFFIVDTKDMNKNR 139

Query: 139 CDLKIKGGQEL 149
            +L  KG  EL
Sbjct: 140 YELYTKGDYEL 150


>gi|153953012|ref|YP_001393777.1| Fe-S oxidoreductase [Clostridium kluyveri DSM 555]
 gi|219853668|ref|YP_002470790.1| hypothetical protein CKR_0325 [Clostridium kluyveri NBRC 12016]
 gi|146345893|gb|EDK32429.1| Predicted Fe-S oxidoreductase [Clostridium kluyveri DSM 555]
 gi|219567392|dbj|BAH05376.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 392

 Score = 39.6 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 23/95 (24%)

Query: 32  CNLWSGREQDRLSAQCRFCDT---DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           CNL            C + D+    F     +K  +Y ++ LA+L          +    
Sbjct: 47  CNLKC--------RHC-YADSQNKKFEEELDSKEAKYLIEDLAEL----------KVPVL 87

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           +++GGEPL++ D+  L+           + TNGT+
Sbjct: 88  LISGGEPLMREDLFELLNYAKNYNIRSTISTNGTL 122


>gi|297538387|ref|YP_003674156.1| coenzyme PQQ biosynthesis protein E [Methylotenera sp. 301]
 gi|297257734|gb|ADI29579.1| coenzyme PQQ biosynthesis protein E [Methylotenera sp. 301]
          Length = 409

 Score = 39.6 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 12/93 (12%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R    C FC   TD+             +Q    + +    G  +     
Sbjct: 33  PLWLLAEVTYRCPLHCAFCYNPTDY---DKHTQNELTTEQWIQALRDARKMGAIQLG--- 86

Query: 90  LTGGEPLLQVDVP--LIQALNKRGFEIAVETNG 120
           ++GGEPLL+ D+   +I+A  K G+   + T+G
Sbjct: 87  ISGGEPLLRDDIEDIVIEA-RKLGYYSNLITSG 118


>gi|168215418|ref|ZP_02641043.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
           NCTC 8239]
 gi|182382388|gb|EDT79867.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
           NCTC 8239]
          Length = 331

 Score = 39.6 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D+ + +C +C                +D++  +++E    G K+ R   LTGGEPL++  
Sbjct: 26  DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 82

Query: 101 VPLIQALNKRGFEIAVE-----TNG 120
           +  +  +        +E     TNG
Sbjct: 83  I--VDLIKNINKIPEIEEICLTTNG 105


>gi|167462032|ref|ZP_02327121.1| pyrroloquinoline quinone biosynthesis protein PqqE [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 253

 Score = 39.6 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 15/130 (11%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105
           C  C       +        V+Q   ++ E    G       + TGGEP     +  LI 
Sbjct: 8   CPVC----KRFEERDEAELTVEQWKRILTELSHFGTSA---VLFTGGEPTRYPYIHELID 60

Query: 106 ALNKRGFEIAVETNGTIEPPQGIDW----ICVSPKAGCDLKIKGGQELKLVFPQVNVSPE 161
              + G    + TNG +   Q        I V+ K   +  I+    +K    +V +  +
Sbjct: 61  FSIELGMATNLHTNGLVPLKQVPSVLGFHITVTSKRNLNKIIQNYCNIK---DRVTLLVD 117

Query: 162 NYIGFDFERF 171
           +++  D ++ 
Sbjct: 118 DHLFSDVKQI 127


>gi|110801520|ref|YP_699075.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
           SM101]
 gi|123341686|sp|Q0SS32|MOAA_CLOPS RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|110682021|gb|ABG85391.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
           SM101]
          Length = 323

 Score = 39.6 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D+ + +C +C                +D++  +++E    G K+ R   LTGGEPL++  
Sbjct: 18  DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 74

Query: 101 VPLIQALNKRGFEIAVE-----TNG 120
           +  +  +        +E     TNG
Sbjct: 75  I--VDLIKNINKIPEIEEICLTTNG 97


>gi|52787503|ref|YP_093332.1| hypothetical protein BLi03823 [Bacillus licheniformis ATCC 14580]
 gi|319647988|ref|ZP_08002205.1| hypothetical protein HMPREF1012_03244 [Bacillus sp. BT1B_CT2]
 gi|52350005|gb|AAU42639.1| putative protein [Bacillus licheniformis ATCC 14580]
 gi|317389623|gb|EFV70433.1| hypothetical protein HMPREF1012_03244 [Bacillus sp. BT1B_CT2]
          Length = 170

 Score = 39.6 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 28/113 (24%)

Query: 1   MKLYSIKEIFLTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           MK+ +I  I  ++  GEG       VF   +GC        ++ S               
Sbjct: 17  MKVMNI--IHDSIVDGEGLRT---VVF--LAGCPHMCEGCHNKQS------------WNI 57

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKR 110
             G   +VD++ + I       +        +GGEPLL     + L + + + 
Sbjct: 58  NNGFDMSVDEVFEEIM------KNPLTNVTYSGGEPLLHAGELIELSEKIKQH 104


>gi|4589922|dbj|BAA76928.1| molybdenum cofactor biosynthesis protein A [Clostridium
           perfringens]
          Length = 323

 Score = 39.6 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D+ + +C +C                +D++  +++E    G K+ R   LTGGEPL++  
Sbjct: 18  DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 74

Query: 101 VPLIQALNKRGFEIAVE-----TNG 120
           +  +  +        +E     TNG
Sbjct: 75  I--VDLIKNINKIPEIEEICLTTNG 97


>gi|260899694|ref|ZP_05908089.1| glycyl-radical enzyme activating protein family protein [Vibrio
           parahaemolyticus AQ4037]
 gi|308106868|gb|EFO44408.1| glycyl-radical enzyme activating protein family protein [Vibrio
           parahaemolyticus AQ4037]
          Length = 315

 Score = 39.6 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 88  CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEP 124
              +GGEPL+Q ++   L + L++     AVE+   +  
Sbjct: 142 VTFSGGEPLMQPNLVAELAERLHQNHVSTAVESCMHVPW 180


>gi|157785651|ref|NP_001099130.1| molybdenum cofactor biosynthesis protein 1 [Danio rerio]
 gi|156788953|gb|ABU96048.1| molybdenum cofactor synthesis step-1 variant 1 [Danio rerio]
          Length = 402

 Score = 39.6 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLT 91
           N       ++ + +C++C     G++ T   +    D+L  +       G  + R   +T
Sbjct: 87  NYLRISLTEKCNLRCQYC-MPQDGVKLTPRSQLLTTDELLTVARLFVQEGVNKIR---IT 142

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNGTIEPPQGIDWICVSPKAGCDL 141
           GGEPL++ D + +I  L K  G + IAV TNG        D      KAG DL
Sbjct: 143 GGEPLIRPDILHIIAELRKLEGLKTIAVTTNGMNLAKILPDLK----KAGVDL 191


>gi|148263076|ref|YP_001229782.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146396576|gb|ABQ25209.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 458

 Score = 39.6 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 20/106 (18%)

Query: 31  GCNLWSGREQ--------------DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           GC    G                 +R +  C +C   F      +     +  +A+ +  
Sbjct: 79  GCPFDCGICAGHRQQSCTVLIEVTERCNLACPYC---FAAAGRQEVHDPPLAVIAERL-R 134

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGFE-IAVETNG 120
             +          L+GGEP ++ D+P I  L  + GF  I + +NG
Sbjct: 135 AAMQASGPHNIVQLSGGEPTVRDDLPAIITLGRELGFPFIQLNSNG 180


>gi|83648508|ref|YP_436943.1| molybdenum cofactor biosynthesis protein [Hahella chejuensis KCTC
           2396]
 gi|83636551|gb|ABC32518.1| Molybdenum cofactor biosynthesis enzyme [Hahella chejuensis KCTC
           2396]
          Length = 328

 Score = 39.6 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 7/100 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR   +C +C    +    T   R  +  L +L E      E       LTG
Sbjct: 15  NYVRLSVTDRCDFRCVYC----MAEDMTFLPREQILSLEELYEVGKAFVELGVHKLRLTG 70

Query: 93  GEPLLQVD-VPLIQAL-NKRG-FEIAVETNGTIEPPQGID 129
           GEPL++ + + L+  L   +G  E+ + TNG+       D
Sbjct: 71  GEPLVRRNILELVDKLGRLQGLHELTLTTNGSQLVRMAKD 110


>gi|84390457|ref|ZP_00991468.1| pyruvate formate-lyase activating enzyme [Vibrio splendidus 12B01]
 gi|84376717|gb|EAP93593.1| pyruvate formate-lyase activating enzyme [Vibrio splendidus 12B01]
          Length = 304

 Score = 39.6 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 12/112 (10%)

Query: 30  SGCNLWS----GREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           SGC   +      + +   A C  CD            + N   +++++ E     +   
Sbjct: 71  SGCPSSALSMIDGKVNWDPAACTNCDQCIDVCDHKSSPKINTMAVSEVL-ELVRHNQFFL 129

Query: 86  RYCVLTGGEPLLQV--DVPLIQA----LNKRGFEIAVETNGTIEPPQGIDWI 131
               ++GGE  +Q+   + L QA    L        +++NG++   QG D +
Sbjct: 130 SGITISGGEATMQLPFIIELFQAIKSDLQLAHLTCFIDSNGSLSL-QGWDKV 180


>gi|299783310|gb|ADJ41308.1| Molybdenum (Mo2+) cofactor biosynthesis enzyme [Lactobacillus
           fermentum CECT 5716]
          Length = 332

 Score = 39.6 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C     G+      R  + D++  LI      G  + R   +TGGEPLL+ 
Sbjct: 21  DRCNLRCVYC-MPKEGLPFFPTDRVLSQDEIVQLITNFAQLGIHKVR---ITGGEPLLRT 76

Query: 100 D-VPLIQALNKR-GFE-IAVETNG 120
           D V +++ + +  G E +++ TNG
Sbjct: 77  DVVDIVRRIKEIDGIEDVSITTNG 100


>gi|297545371|ref|YP_003677673.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296843146|gb|ADH61662.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 453

 Score = 39.6 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 20/105 (19%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C +C +T+  G +           + + I+ +           V 
Sbjct: 101 CNL-----------KCEYCIETEIQGFRRENMTNDTTKNIINWIQRKIDEKFYHILELVF 149

Query: 91  TGGEPLLQVDVPL-------IQALNKR-GFEIAVETNGTIEPPQG 127
            GGEPLL  D           +AL K   F  ++ TNGTIE    
Sbjct: 150 YGGEPLLNKDPIFQICDYFYNEALKKNLIFSFSIITNGTIELSDD 194


>gi|229196388|ref|ZP_04323136.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1293]
 gi|228587242|gb|EEK45312.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1293]
          Length = 333

 Score = 39.6 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  F+  +         D++  L       G  + R   LTG
Sbjct: 18  DRCNFRCTYCMPAEVFGPDYAFLQEEC----LLTFDEIERLARLFISMGINKIR---LTG 70

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           GEPLL+ D+P LI  L K  G + I + TNG
Sbjct: 71  GEPLLRKDLPKLIGRLAKLEGLKDIGLTTNG 101


>gi|209524544|ref|ZP_03273092.1| Radical SAM domain protein [Arthrospira maxima CS-328]
 gi|209495002|gb|EDZ95309.1| Radical SAM domain protein [Arthrospira maxima CS-328]
          Length = 340

 Score = 39.6 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 20/94 (21%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            + CNL           +           +G    R        ++EE            
Sbjct: 31  LAKCNLSCHHCMVYSPIR-----------KGPSLSRM-----LQIVEEMTRIN---VHKV 71

Query: 89  VLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGT 121
           +++GGEP L      L  AL ++G  + + TN T
Sbjct: 72  LISGGEPFLFPFLEELCFALYEKGILVDINTNAT 105


>gi|171185823|ref|YP_001794742.1| radical SAM domain-containing protein [Thermoproteus neutrophilus
           V24Sta]
 gi|170935035|gb|ACB40296.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 373

 Score = 39.6 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 18/93 (19%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F  F+GCN            +C +C    +      G     + LA +   Q    E+
Sbjct: 153 TIF--FAGCNF-----------RCVYCQNWDISQHPEAGVEVTSESLAAI---QIGLREE 196

Query: 84  EGRYCVLTGGEPL--LQVDVPLIQALNKRGFEI 114
             R     GGEP   +   +  ++ L  RG  +
Sbjct: 197 GARNINWVGGEPTPNIPYILESMKVLASRGVNV 229


>gi|117924371|ref|YP_864988.1| radical SAM protein [Magnetococcus sp. MC-1]
 gi|117608127|gb|ABK43582.1| Radical SAM domain protein [Magnetococcus sp. MC-1]
          Length = 365

 Score = 39.6 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDVP-- 102
           +C FC  D++G       + + D +   + +    G K   Y    G GEPLL   +   
Sbjct: 51  RCTFCAVDYIGYNS--ANKLDADMMKARLPQMGALGIKSIMYA---GEGEPLLHKRISEI 105

Query: 103 LIQALNKRGFEIAVETNGTIEPPQGID 129
           L+      G + A+ TN T+ P   +D
Sbjct: 106 LLDT-KAAGIDTALTTNATVLPMDFLD 131


>gi|325856335|ref|ZP_08172051.1| pyruvate formate-lyase 1-activating enzyme [Prevotella denticola
           CRIS 18C-A]
 gi|325483519|gb|EGC86491.1| pyruvate formate-lyase 1-activating enzyme [Prevotella denticola
           CRIS 18C-A]
          Length = 246

 Score = 39.6 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 34/127 (26%)

Query: 3   LYSI--KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVG 56
           +  +   E F ++ G G        +F    GC           + +CR+C   DT    
Sbjct: 7   MLRVHSVESFGSVDGPGIRFV----IF--LKGC-----------AMRCRYCHNPDT---- 45

Query: 57  IQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR---GF 112
                G   +VD  L+  +  Q   GEK G    ++GGE LLQ   PL +   K    G 
Sbjct: 46  WDRAGGILRSVDDVLSQALRYQSYWGEKGG--ITVSGGEALLQ-LRPLTELFRKAKSLGV 102

Query: 113 EIAVETN 119
              ++T+
Sbjct: 103 NTCLDTS 109


>gi|307353458|ref|YP_003894509.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
           DSM 11571]
 gi|307156691|gb|ADN36071.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 496

 Score = 39.6 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 13/99 (13%)

Query: 32  CN-------LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEK 83
           CN       L +    +R +  C FC   F   +        + DQ+ D++         
Sbjct: 83  CNNHKSTTLLANIDLTNRCNLNCDFC---FANARACGFVYEPDFDQIVDMLRVLRDEKPC 139

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
                  +GGEP ++ D+  +I+   + GF ++ + TNG
Sbjct: 140 PTPAVQFSGGEPTMRDDLVEIIKKAREMGFNQVQMATNG 178


>gi|288559903|ref|YP_003423389.1| radical SAM domain-containing protein [Methanobrevibacter
           ruminantium M1]
 gi|288542613|gb|ADC46497.1| radical SAM domain-containing protein [Methanobrevibacter
           ruminantium M1]
          Length = 363

 Score = 39.6 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 15/92 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       R +  C                + + D   D+ ++    G     + VL 
Sbjct: 72  CNLHCVGCYSRANNSCS---------DEAPLNQLSADDWEDIFKQARDIG---ISFIVLA 119

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GGEP+++ D +       +  F I   TNGT+
Sbjct: 120 GGEPMIREDVIKKASKFPEILFPIF--TNGTM 149


>gi|189425295|ref|YP_001952472.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Geobacter lovleyi SZ]
 gi|189421554|gb|ACD95952.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Geobacter lovleyi SZ]
          Length = 333

 Score = 39.6 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
                 +TGGEP L   +  L+Q +  RG  I   TN
Sbjct: 72  PAPVVTITGGEPFLYPHIYELVQGILDRGRHIMFCTN 108


>gi|167644273|ref|YP_001681936.1| radical SAM domain-containing protein [Caulobacter sp. K31]
 gi|167346703|gb|ABZ69438.1| Radical SAM domain protein [Caulobacter sp. K31]
          Length = 481

 Score = 39.6 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 14/103 (13%)

Query: 31  GCNLWSGREQDRLSAQCR-----------FCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G   D     C             C   F G   +      + ++ + + +  +
Sbjct: 95  GCPYDCGLCPDHEQHSCLAILEINEACNLTCPVCFAGSSTSLDAHRPLAEV-ERMLDVIV 153

Query: 80  TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNG 120
             E E     L+GGEP L      ++ A   R    + + TNG
Sbjct: 154 ASEGEPDLVQLSGGEPTLHPQFFEILSAARARPIRHLMINTNG 196


>gi|89894969|ref|YP_518456.1| hypothetical protein DSY2223 [Desulfitobacterium hafniense Y51]
 gi|219669371|ref|YP_002459806.1| radical SAM protein [Desulfitobacterium hafniense DCB-2]
 gi|89334417|dbj|BAE84012.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539631|gb|ACL21370.1| Radical SAM domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 391

 Score = 39.6 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          AQ       + G   T+  +  +D LAD           +    + +
Sbjct: 47  CNLQCAHCYMESDAQ------KYQGELTTEEAKRFIDDLAD----------FKVPVLLFS 90

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GGEPL++ D   L +    +G    + TNGT+
Sbjct: 91  GGEPLIRPDFFELAEYAAAKGIRPTLSTNGTL 122


>gi|326794480|ref|YP_004312300.1| molybdenum cofactor biosynthesis protein A [Marinomonas
           mediterranea MMB-1]
 gi|326545244|gb|ADZ90464.1| molybdenum cofactor biosynthesis protein A [Marinomonas
           mediterranea MMB-1]
          Length = 331

 Score = 39.6 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 13/87 (14%)

Query: 41  DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           D+   +C +C D D   +      R ++  L +++       +   +   +TGGEPL++ 
Sbjct: 23  DKCDFRCTYCMDEDVTFL-----PRSHILTLEEIVTVAQTFVKMGSKKIRITGGEPLVRK 77

Query: 100 DVPLIQALNKR----GF-EIAVETNGT 121
           ++  + AL K     G  E+ + TNG+
Sbjct: 78  NI--LWALEKIANTDGLEELTLTTNGS 102


>gi|291458400|ref|ZP_06597790.1| pyruvate formate-lyase 1-activating enzyme [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291418933|gb|EFE92652.1| pyruvate formate-lyase 1-activating enzyme [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 269

 Score = 39.6 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 28/119 (23%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        +F    GC           + +CR+C   DT          
Sbjct: 32  VESFGSVDGPGTRFL----IF--LKGC-----------AMRCRYCHNPDT----WDYHSE 70

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
              + D L D  E       ++G    ++GG+PL+Q+D  + L +   +RG    ++T+
Sbjct: 71  DMRSADSLLDQAERYREYWGEDGG-ITVSGGDPLIQIDFVLQLFEEAKRRGINTCLDTS 128


>gi|254383767|ref|ZP_04999115.1| radical SAM domain containing protein [Streptomyces sp. Mg1]
 gi|194342660|gb|EDX23626.1| radical SAM domain containing protein [Streptomyces sp. Mg1]
          Length = 384

 Score = 39.6 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 19/107 (17%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD--------LIEEQWITGEKEGRYCVLTG 92
           +R +  C +C   +V     +  R+   +++          I E          + VL G
Sbjct: 19  NRCNIDCDYC---YVFNSADQAWRHLPARMSADVARAAGLRIGEHAAVHGLRSVHVVLHG 75

Query: 93  GEPLL---QVDVPLIQALNK---RGFEIAVE--TNGTIEPPQGIDWI 131
           GEPLL   +    L+ A+ +    G  +  E  TNGT+     +D  
Sbjct: 76  GEPLLTGPRHMADLLGAVREGVPAGVAVRFELQTNGTLLTEPWLDLF 122


>gi|330686411|gb|EGG98011.1| molybdenum cofactor biosynthesis protein A [Staphylococcus
           epidermidis VCU121]
          Length = 341

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 41  DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C   +  G       +  +    +++    +  +   +   +TGGEPLL+ 
Sbjct: 23  DRCNFRCDYCMPKEIFGDDFVFLPKEELLTFEEMVRISKLYAQLGVKKIRITGGEPLLRR 82

Query: 100 DV-PLIQALNK-RGFE-IAVETNG 120
           ++  LI+ LN+  G E I + TNG
Sbjct: 83  NLYQLIEQLNQIEGIEDIGLTTNG 106


>gi|254482140|ref|ZP_05095381.1| radical SAM domain protein [marine gamma proteobacterium HTCC2148]
 gi|214037465|gb|EEB78131.1| radical SAM domain protein [marine gamma proteobacterium HTCC2148]
          Length = 431

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 25/112 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN       D                    G R++ ++L + I+     G K     V+ 
Sbjct: 84  CNYACDHCVDLDILN--------------TGIRFDHEKLLESIKVMAERGMKS--VIVIG 127

Query: 92  GGEPLLQVDVPL-IQALNKRGFEIAVETNGT--------IEPPQGIDWICVS 134
           GGEP L       I+ +     +IA+ +NGT         +     DW+ +S
Sbjct: 128 GGEPTLYPKFEETIRFMKDLKLQIAIVSNGTGNDKIAKVADCMDKADWVRLS 179


>gi|188994934|ref|YP_001929186.1| hypothetical protein PGN_1070 [Porphyromonas gingivalis ATCC 33277]
 gi|188594614|dbj|BAG33589.1| hypothetical protein PGN_1070 [Porphyromonas gingivalis ATCC 33277]
          Length = 359

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 11/87 (12%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLAD--LIEEQWITGEKEGRYCVLTGGEPLLQVDVP-- 102
           C FC       +   G   +++ +     +E             +++GGEPLL+ D+   
Sbjct: 37  CSFC-------ESGNGLWRDIEDIVRDVWMESAQTFVNNGLEVAIISGGEPLLRADLASD 89

Query: 103 LIQALNKRGFEIAVETNGTIEPPQGID 129
           +I+   K G    + T+G +     ID
Sbjct: 90  MIKLFEKEGVFSVLNTSGVLFSRNSID 116


>gi|118472436|ref|YP_889651.1| radical SAM domain-containing protein [Mycobacterium smegmatis str.
           MC2 155]
 gi|118173723|gb|ABK74619.1| radical SAM domain protein [Mycobacterium smegmatis str. MC2 155]
          Length = 522

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 16/91 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   F            V ++   I+++           +L+
Sbjct: 123 CNL-----------RCPTC---FTDSSPDLRNVVPVAEVLANIDQRLARENGRIDVLMLS 168

Query: 92  GGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
           GGEP L   +P L+  L KR    I V +NG
Sbjct: 169 GGEPTLHPQLPTLLAELVKRPITRILVNSNG 199


>gi|21225059|ref|NP_630838.1| hypothetical protein SCO6766 [Streptomyces coelicolor A3(2)]
 gi|256783787|ref|ZP_05522218.1| hypothetical protein SlivT_04765 [Streptomyces lividans TK24]
 gi|289767669|ref|ZP_06527047.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Streptomyces lividans TK24]
 gi|4539170|emb|CAB39699.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
 gi|289697868|gb|EFD65297.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Streptomyces lividans TK24]
          Length = 340

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 38  CNLAC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  +++ L  +   + + TN  +   + +D    SP     + I G +E
Sbjct: 80  GGEPLMHPQIDEIVRQLVAKRKYVFLCTN-AMLMRKKMDKFKPSPYFAFAVHIDGLRE 136


>gi|317497375|ref|ZP_07955698.1| glycyl-radical enzyme activating protein family [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316895444|gb|EFV17603.1| glycyl-radical enzyme activating protein family [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 304

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 8/92 (8%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
           G    + ++ D +  Q +          ++GGEPL   D  + L++   K     A+ET 
Sbjct: 107 GKPMEISEIIDQVLRQELFYHHGEGGLTVSGGEPLSHGDWLIRLLKEAKKHRLHTAIETC 166

Query: 120 G--TIEPPQGI----DWICVSPKAGCDLKIKG 145
           G  + E  + +    D I    K+  D K K 
Sbjct: 167 GYASYEVLKEVINYLDVIFFDIKSMNDEKHKR 198


>gi|323343351|ref|ZP_08083578.1| pyruvate formate-lyase activating enzyme [Prevotella oralis ATCC
           33269]
 gi|323095170|gb|EFZ37744.1| pyruvate formate-lyase activating enzyme [Prevotella oralis ATCC
           33269]
          Length = 283

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 30/120 (25%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        +F    GC             +CR+C   DT          
Sbjct: 47  VESFGSVDGPGIRFV----IF--LKGC-----------RMRCRYCHNPDT----WDKHSK 85

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETN 119
              + D+L +  +        +G    ++GGE LLQ+D  LI       K G    ++T+
Sbjct: 86  DMRSADELIEQAQRYRSYWGAKGG-ITVSGGEALLQIDF-LIDLFRKAKKLGINTCLDTS 143


>gi|298506217|gb|ADI84940.1| glycerol dehydratase-activating enzyme, putative [Geobacter
           sulfurreducens KN400]
          Length = 298

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 45/128 (35%), Gaps = 6/128 (4%)

Query: 32  CNLWSGREQDRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
           C   +        A C  C    D    G +   G    V  +   + +  I  E+ G  
Sbjct: 66  CPHGTAGRGQGREAACLICGRCADACPTGARRLTGTEMTVADVLAALLKDRIFYEESGGG 125

Query: 88  CVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
              +GGEPL Q      L+    +RG   AV+T G     Q ++    +     DLK+  
Sbjct: 126 ATFSGGEPLCQPGFLKALLAGCRERGIRTAVDTGGFAPRDQFLEVATAADLILYDLKLMD 185

Query: 146 GQELKLVF 153
            +  + V 
Sbjct: 186 AERHRAVV 193


>gi|255523588|ref|ZP_05390555.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|255512643|gb|EET88916.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
          Length = 350

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 20/124 (16%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV--------LTGG 93
           R + +C+ C       +   G  + +++L +L  +      +  + C         +TGG
Sbjct: 13  RCNKRCKHC-----YQEDYSGEEFTIEKLKELGSQYLELLYEYNKNCNEKIKGQINITGG 67

Query: 94  EPLLQVDV-PLIQALNKRG--FEIAVETNGTIEPPQG-IDWICVSPK---AGCDLKIKGG 146
           EP ++ D+  L+    K    F   + TNG++   +  I     +PK      D   K  
Sbjct: 68  EPFIREDIWELLDFFKKNADYFNFGILTNGSLLNEENVIRLKSYNPKMVQVSLDGSKKVH 127

Query: 147 QELK 150
            E++
Sbjct: 128 DEIR 131


>gi|254168872|ref|ZP_04875712.1| Wyosine base formation family [Aciduliprofundum boonei T469]
 gi|197622136|gb|EDY34711.1| Wyosine base formation family [Aciduliprofundum boonei T469]
          Length = 308

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 74  IEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
           +E+     E       LTG EP L   +  LI+  +KRGF   + TNGT+ 
Sbjct: 112 LEKWKEAMEPRHVAISLTG-EPTLYPRLGELIEEYHKRGFTTFLVTNGTMP 161


>gi|149920707|ref|ZP_01909172.1| hypothetical molybdenum cofactor biosynthesis protein A
           [Plesiocystis pacifica SIR-1]
 gi|149818494|gb|EDM77943.1| hypothetical molybdenum cofactor biosynthesis protein A
           [Plesiocystis pacifica SIR-1]
          Length = 587

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 50/146 (34%), Gaps = 26/146 (17%)

Query: 12  TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
           T+QG     G           +++  +     + +C FC         T+ G      L 
Sbjct: 31  TVQG----TG-----------HVFEIQLGHLCNNRCVFC----SSGMLTQEGLAKPVPLD 71

Query: 72  DLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN---KRGFE-IAVETNGT-IEPPQ 126
           D++           R  +  GGEP L      + AL      GFE I + TNG  +  P 
Sbjct: 72  DILAAIAEAKAAGARRLIFLGGEPTLHKG--FLTALEHTVAVGFEDIVIFTNGVLLPQPG 129

Query: 127 GIDWICVSPKAGCDLKIKGGQELKLV 152
            ID +         + I+G  E   V
Sbjct: 130 FIDKVVALGNFEWRISIQGADEASHV 155


>gi|78066534|ref|YP_369303.1| hypothetical protein Bcep18194_A5065 [Burkholderia sp. 383]
 gi|77967279|gb|ABB08659.1| hypothetical protein Bcep18194_A5065 [Burkholderia sp. 383]
          Length = 311

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 42/128 (32%), Gaps = 27/128 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL              +    +   +  +         ADL     +   +  +     
Sbjct: 68  CNLTCAECCSLSPLLPEW----YASPESLE---------ADLRMAAKVLRPRMFKLV--- 111

Query: 92  GGEPLLQV-DVPLIQALNKRGFE--IAVETNG------TIEPPQGIDWICVS--PKAGCD 140
           GGEPLL    V L+Q +   G    I+V TNG      T    Q +D + +S  PK    
Sbjct: 112 GGEPLLHPALVELVQRVRATGIAPVISVTTNGLKLGEMTCAFWQAVDALTISRYPKPSLS 171

Query: 141 LKIKGGQE 148
             +    E
Sbjct: 172 PDLVAHIE 179


>gi|160903010|ref|YP_001568591.1| radical SAM domain-containing protein [Petrotoga mobilis SJ95]
 gi|160360654|gb|ABX32268.1| Radical SAM domain protein [Petrotoga mobilis SJ95]
          Length = 474

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 36/114 (31%), Gaps = 24/114 (21%)

Query: 32  CNLWS--GREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           CNL        DR      +            G     ++  + IE+   +G K      
Sbjct: 17  CNLSCIHCYNNDRYGKNNIY----------HSGKDLTTEEARNAIEKIANSGVKHIHLL- 65

Query: 90  LTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEPPQ--------GIDWICVS 134
             GGEP   +    L     K G  + V TNG    P+         +D I VS
Sbjct: 66  --GGEPFCRKDIFELCSFAKKEGLMVTVNTNGLFLTPENCEKLVFSEVDSITVS 117


>gi|70605921|ref|YP_254791.1| hypothetical protein Saci_0071 [Sulfolobus acidocaldarius DSM 639]
 gi|68566569|gb|AAY79498.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
          Length = 337

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 22/107 (20%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT--DFVGIQGTKGGRYNVDQLADLIEEQW 78
           G++ VF     C              C +C       G           + L D I E +
Sbjct: 26  GKLVVFI-TGEC-----------GDNCYYCPVSEQRFGKDKAFANEAPAENLVDFIYEAY 73

Query: 79  ITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKR---GFEIAVETNG 120
                      +TGG+PL+++D  V LI+         F I + T+G
Sbjct: 74  RMRALGAG---ITGGDPLIRIDKVVSLIKKFKDEFGQEFHIHLYTSG 117


>gi|322387090|ref|ZP_08060701.1| pyruvate formate-lyase activating enzyme [Streptococcus infantis
           ATCC 700779]
 gi|321142077|gb|EFX37571.1| pyruvate formate-lyase activating enzyme [Streptococcus infantis
           ATCC 700779]
          Length = 264

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 21/99 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT +         R   D L + +  +   G
Sbjct: 33  VF--LQGC-----------QMRCQYCHNPDT-WAMETNKSRVRTVDDVLEEALRYRGFWG 78

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           +K G    ++GGE LLQ+D  + L     ++G    ++T
Sbjct: 79  DKGG--ITVSGGEALLQIDFLIALFTKAKEKGIHCTLDT 115


>gi|291396166|ref|XP_002714713.1| PREDICTED: molybdenum cofactor synthesis-step 1 protein
           [Oryctolagus cuniculus]
          Length = 613

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +       K      +++  L       G  + R   LT
Sbjct: 80  CNL-----------RCQYCMPEEGVSLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 125

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GGEPL++ D V ++  L++  G   I V TNG
Sbjct: 126 GGEPLIRPDVVDIVARLHRLEGLRTIGVTTNG 157


>gi|266621786|ref|ZP_06114721.1| pyruvate formate-lyase-activating enzyme [Clostridium hathewayi DSM
           13479]
 gi|288866524|gb|EFC98822.1| pyruvate formate-lyase-activating enzyme [Clostridium hathewayi DSM
           13479]
          Length = 314

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 41/130 (31%), Gaps = 38/130 (29%)

Query: 24  AVFCRFSGCNLWSGREQDRL-----------SAQCRFC---------DTDFVGIQGTK-- 61
            VF    GC L      +             +A C  C          T     +     
Sbjct: 56  TVF--LKGCPLRCSWCHNPEGLSGVPQLMVGTASCTGCGKCREVCRHKTCISCGECIPVC 113

Query: 62  --------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF- 112
                   G +   ++L   I +      + G     +GGEPL+Q +  L + L   G  
Sbjct: 114 PLHLRRIAGEKMTSEELIFRIRKSSDYYARYGGGVTFSGGEPLMQAEF-LTEVL--SGIP 170

Query: 113 EIA--VETNG 120
           E+   VET+G
Sbjct: 171 EVHRAVETSG 180


>gi|238893550|ref|YP_002918284.1| putative iron-sulfur modifier protein [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238545866|dbj|BAH62217.1| putative iron-sulfur modifier protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 395

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 26/102 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC--V 89
           CNL            CR+C   +     T   + +  +L   I           R    V
Sbjct: 35  CNL-----------ACRYC---YYPQDETPVNKMDDARLEQFIRRYIAAQPAGAREINFV 80

Query: 90  LTGGEPLLQVDVPLIQ---ALNKR----GFEI--AVETNGTI 122
             GGEPLL   +   +   AL  R    G  I  +++TNGT+
Sbjct: 81  WQGGEPLL-AGLSFYKKALALQARYAPDGVTISNSLQTNGTL 121


>gi|260881038|ref|ZP_05403451.2| pyruvate formate-lyase 1-activating enzyme [Mitsuokella multacida
           DSM 20544]
 gi|260850246|gb|EEX70253.1| pyruvate formate-lyase 1-activating enzyme [Mitsuokella multacida
           DSM 20544]
          Length = 244

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 42/119 (35%), Gaps = 27/119 (22%)

Query: 8   EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F ++ G G        +F    GC           + +C +C   DT         G 
Sbjct: 11  ETFGSVDGPGTRFI----IF--LQGC-----------AMRCLYCHNVDT---WDAKKGGE 50

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK--RGFEIAVETNG 120
               D L D  E        EG    ++GGEPLLQ+D  L        RG    ++T G
Sbjct: 51  LRTADDLLDQAERYRPYWGPEGG-ITVSGGEPLLQLDFLLDLFQKAKRRGINTCIDTAG 108


>gi|225163748|ref|ZP_03726049.1| (Formate-C-acetyltransferase)-activating enzyme [Opitutaceae
           bacterium TAV2]
 gi|224801658|gb|EEG19953.1| (Formate-C-acetyltransferase)-activating enzyme [Opitutaceae
           bacterium TAV2]
          Length = 264

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 31/119 (26%)

Query: 27  CRFS----GCNLWSGREQDRLSAQCRFCDTDFVGIQGTK--------------GGRYNVD 68
            R +    GC L           +C +C          +              G     +
Sbjct: 20  IRTTLFLKGCPL-----------RCLWCHNPESMSPKPQYAAPVRPDDPPQLYGYTTTPE 68

Query: 69  QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPP 125
           +L  LI +     +  G    L+GGEP  Q      L++A         ++T+G   PP
Sbjct: 69  KLLPLICKDRAWYDATGGGITLSGGEPAFQPRFTEALLRAARAENIHTCLDTSGHAPPP 127


>gi|312795515|ref|YP_004028437.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           rhizoxinica HKI 454]
 gi|312167290|emb|CBW74293.1| Molybdenum cofactor biosynthesis protein A [Burkholderia
           rhizoxinica HKI 454]
          Length = 372

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 32/131 (24%)

Query: 28  RFSGCNLWSGREQ--DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           R +   L   R    DR + +C +C        D  F+            +++ + +   
Sbjct: 40  RLAR-PLRDLRISVTDRCNFRCVYCMPRTVFGRDYPFL----PHSALLTFEEI-ERVARL 93

Query: 78  WITGEKEGRYCVLTGGEPLLQVDVP-LIQALN------KRGFEIAVETNGTIEP------ 124
           ++    E     LTGGEPLL+  +  LI+ L        R  ++ + TNG +        
Sbjct: 94  FVAQGVEK--IRLTGGEPLLRKHLERLIERLAALRTPDARALDLTLTTNGALLARKARAL 151

Query: 125 -PQGIDWICVS 134
              G+  + VS
Sbjct: 152 KDAGLTRVTVS 162


>gi|296876029|ref|ZP_06900085.1| pyruvate formate-lyase activating enzyme [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432940|gb|EFH18731.1| pyruvate formate-lyase activating enzyme [Streptococcus
           parasanguinis ATCC 15912]
          Length = 264

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 21/99 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT +         R   D L + +  +   G
Sbjct: 33  VF--LQGC-----------QMRCQYCHNPDT-WAMETNKSRERTVDDVLEEALRYRGFWG 78

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           +K G    ++GGE LLQ+D  + L     + G    ++T
Sbjct: 79  QKGG--ITVSGGEALLQIDFLIALFTKAQELGIHCTLDT 115


>gi|254366274|ref|ZP_04982318.1| hypothetical transferase [Mycobacterium tuberculosis str. Haarlem]
 gi|134151786|gb|EBA43831.1| hypothetical transferase [Mycobacterium tuberculosis str. Haarlem]
          Length = 788

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 18/112 (16%)

Query: 27  CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQL 70
            RF      GC    G   D     C             C   F        G       
Sbjct: 77  LRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYAITAAQ 136

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRG-FEIAVETNG 120
            + + +  +  E E    + +GGEP +    +  + A   R    + + TNG
Sbjct: 137 CERMLDTLVAAEGEPEVAMFSGGEPTIHKQLLEFVDAAQARPVKTVIINTNG 188


>gi|153005220|ref|YP_001379545.1| radical SAM domain-containing protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152028793|gb|ABS26561.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 450

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 32/98 (32%), Gaps = 21/98 (21%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYC 88
           GCNL            C +C         +       + +       +    GE    Y 
Sbjct: 99  GCNL-----------ACTYC--YQEVFDPSASALMPPEVVEAFFAYVDAHHAGETPRPYV 145

Query: 89  VLTGGEPL-----LQVDV-PLIQALNKRGFEIAVETNG 120
            L GGEPL         +   ++    RG E+AV TNG
Sbjct: 146 TLFGGEPLRDTPAHHDRIGRFLRGAAARGLELAVVTNG 183


>gi|7963892|gb|AAF71374.1|AF262989_1 iron-sulfur modifier protein [Klebsiella pneumoniae]
          Length = 395

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 26/102 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC--V 89
           CNL            CR+C   +     T   + +  +L   I           R    V
Sbjct: 35  CNL-----------ACRYC---YYPQDETPVNKMDDARLEQFIRRYIAAQPAGAREINFV 80

Query: 90  LTGGEPLLQVDVPLIQ---ALNKR----GFEI--AVETNGTI 122
             GGEPLL   +   +   AL  R    G  I  +++TNGT+
Sbjct: 81  WQGGEPLL-AGLSFYKKALALQARYAPDGVTISNSLQTNGTL 121


>gi|125974200|ref|YP_001038110.1| radical SAM family protein [Clostridium thermocellum ATCC 27405]
 gi|125714425|gb|ABN52917.1| Radical SAM [Clostridium thermocellum ATCC 27405]
          Length = 491

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 33  NLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
                 E  +    +C+ C   +      +  +   +Q+  ++++             +T
Sbjct: 135 PYSCSIEITKQCDLRCKHC---YGEAGAMRNTQLTEEQIYSILDKL----SDGCNSVSIT 187

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           GG+P+    +  +I+    RGFE  + TNG
Sbjct: 188 GGDPMCHPKIKEIIKYSIARGFETTLITNG 217


>gi|309798990|ref|ZP_07693247.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus infantis
           SK1302]
 gi|308117394|gb|EFO54813.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus infantis
           SK1302]
          Length = 264

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 21/99 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT +         R   D L + +  +   G
Sbjct: 33  VF--LQGC-----------QMRCQYCHNPDT-WAMETNKSRVRTVDDVLEEALRYRGFWG 78

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           +K G    ++GGE LLQ+D  + L     ++G    ++T
Sbjct: 79  DKGG--ITVSGGEALLQIDFLIALFTKAKEKGIHCTLDT 115


>gi|169343771|ref|ZP_02864770.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
           C str. JGS1495]
 gi|169298331|gb|EDS80421.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
           C str. JGS1495]
          Length = 331

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D+ + +C +C                +D++  +++E    G K+ R   LTGGEPL++  
Sbjct: 26  DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 82

Query: 101 VPLIQALNKRGFEIAVE-----TNG 120
           +  +  +        +E     TNG
Sbjct: 83  I--VDLIKNINKIPEIEEICSTTNG 105


>gi|170287909|ref|YP_001738147.1| radical SAM domain-containing protein [Thermotoga sp. RQ2]
 gi|170175412|gb|ACB08464.1| Radical SAM domain protein [Thermotoga sp. RQ2]
          Length = 482

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 21/92 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C   + G+ G K    + D++ D++++    G       ++T
Sbjct: 120 CNL-----------NCVGC---YAGLYGRKYE-LSHDEVRDILKQANDLGIYFF---IIT 161

Query: 92  GGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
           GGEP      + + +      F +   +NGT+
Sbjct: 162 GGEPFFWPHLMDIFEEFKDSYFLVY--SNGTL 191


>gi|114707677|ref|ZP_01440572.1| molybdenum cofactor biosynthesis protein A [Fulvimarina pelagi
           HTCC2506]
 gi|114536921|gb|EAU40050.1| molybdenum cofactor biosynthesis protein A [Fulvimarina pelagi
           HTCC2506]
          Length = 372

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 26/152 (17%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D +F+     K     +++L  L       G K+ R   LTGGEPL+
Sbjct: 61  DRCDFRCVYCMAEDMEFL----PKRDLLTLEELDRLSTTFIAKGVKKLR---LTGGEPLV 113

Query: 98  QVDVP-LIQALNKRGFEIAVE-----TNGT-------IEPPQGIDWICVSPKAGCDLK-- 142
           + ++  LI++L++     A+E     TNG+            G+  + VS       K  
Sbjct: 114 RKNIMYLIRSLSRHLETGALEELTLTTNGSQLKRFAKDLADAGVRRLNVSVDTLDADKFR 173

Query: 143 -IKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
            I    ELK V   ++ + E  +       +L
Sbjct: 174 RITRWGELKKVMEGIDAAQEAGLHVKLNAVAL 205


>gi|15643587|ref|NP_228633.1| astB/chuR-related protein [Thermotoga maritima MSB8]
 gi|4981355|gb|AAD35906.1|AE001749_9 astB/chuR-related protein [Thermotoga maritima MSB8]
          Length = 482

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 21/92 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C   + G+ G K    + D++ D++++    G       ++T
Sbjct: 120 CNL-----------NCVGC---YAGLYGRKYE-LSHDEVRDILKQANDLGIYFF---IIT 161

Query: 92  GGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
           GGEP      + + +      F +   +NGT+
Sbjct: 162 GGEPFFWPHLMDIFEEFKDSYFLVY--SNGTL 191


>gi|332186015|ref|ZP_08387761.1| molybdenum cofactor biosynthesis protein A [Sphingomonas sp. S17]
 gi|332013830|gb|EGI55889.1| molybdenum cofactor biosynthesis protein A [Sphingomonas sp. S17]
          Length = 339

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 16/106 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +CR+C          +    ++D++A + E     G    R   L+GGEPL++ D
Sbjct: 31  DRCDLRCRYC-MAEQMTFLPRAKLLSLDEIAIIAERFIARGVTRIR---LSGGEPLVRRD 86

Query: 101 VP-LIQAL---NKRGF-EIAVETNGTI-------EPPQGIDWICVS 134
           V  L++ L      G  E+ + TNGT            GI  I VS
Sbjct: 87  VADLVRRLGTHVGHGLDELTMTTNGTRLAEHADTLASAGIRRINVS 132


>gi|289596153|ref|YP_003482849.1| Wyosine base formation domain protein [Aciduliprofundum boonei
           T469]
 gi|289533940|gb|ADD08287.1| Wyosine base formation domain protein [Aciduliprofundum boonei
           T469]
          Length = 308

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 74  IEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
           +E+     E       LTG EP L   +  LI+  +KRGF   + TNGT+ 
Sbjct: 112 LEKWKEAMEPRHVAISLTG-EPTLYPRLGELIEEYHKRGFTTFLVTNGTMP 161


>gi|240171060|ref|ZP_04749719.1| putative transferase [Mycobacterium kansasii ATCC 12478]
          Length = 785

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 13/103 (12%)

Query: 31  GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G   D     C             C   F        G        + + +  +
Sbjct: 90  GCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSGHQPDGYALTVSQCEKMLDALV 149

Query: 80  TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNG 120
             E E    + +GGEP +    +  + A   R  + + + TNG
Sbjct: 150 AAEGEPEVVMFSGGEPTIHKQILEFVDAAQARPIKTVIINTNG 192


>gi|225619467|ref|YP_002720724.1| molybdenum cofactor biosynthesis protein A [Brachyspira
           hyodysenteriae WA1]
 gi|225214286|gb|ACN83020.1| molybdenum cofactor biosynthesis protein A [Brachyspira
           hyodysenteriae WA1]
          Length = 265

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +C +C  +   I+ T       +Q+ ++++E    G K+ R   +TG
Sbjct: 10  NYIRVSVTDRCNLRCVYCMPEEGIIKKTHSQILTYEQIYNVVKEASELGVKKVR---ITG 66

Query: 93  GEPLLQVDV 101
           GEPL++ ++
Sbjct: 67  GEPLVRKNI 75


>gi|7963896|gb|AAF71376.1|AF262990_1 iron-sulfur modifier protein [Klebsiella pneumoniae]
          Length = 395

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 26/102 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC--V 89
           CNL            CR+C   +     T   + +  +L   I           R    V
Sbjct: 35  CNL-----------ACRYC---YYPQDETPVNKMDDARLEQFIRRYIAAQPAGAREINFV 80

Query: 90  LTGGEPLLQVDVPLIQ---ALNKR----GFEI--AVETNGTI 122
             GGEPLL   +   +   AL  R    G  I  +++TNGT+
Sbjct: 81  WQGGEPLL-AGLSFYKKALALQARYAPDGVTISNSLQTNGTL 121


>gi|114710|sp|P20714|ANSME_KLEAE RecName: Full=Anaerobic sulfatase-maturating enzyme; Short=AnSME;
           AltName: Full=Arylsulfatase-activating protein; AltName:
           Full=Ser-type sulfatase-activating enzyme
 gi|149165|gb|AAA25050.1| atsB protein [Klebsiella aerogenes]
          Length = 405

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 26/102 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC--V 89
           CNL            CR+C   +     T   + +  +L   I           R    V
Sbjct: 35  CNL-----------ACRYC---YYPQDETPVNKMDDARLEQFIRRYIAAQPAGAREINFV 80

Query: 90  LTGGEPLLQVDVPLIQ---ALNKR----GFEI--AVETNGTI 122
             GGEPLL   +   +   AL  R    G  I  +++TNGT+
Sbjct: 81  WQGGEPLL-AGLSFYKKALALQARYAPDGVTISNSLQTNGTL 121


>gi|14602168|ref|NP_148716.1| hypothetical protein APE_2598 [Aeropyrum pernix K1]
 gi|5106304|dbj|BAA81615.1| conserved hypothetical protein [Aeropyrum pernix K1]
          Length = 610

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 46/109 (42%), Gaps = 13/109 (11%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL--T 91
           L +    +R    C +C   +    G      +++Q+  ++ +     +    +  +  T
Sbjct: 143 LVNIVVTNRCDLSCFYC-FFYAERAGYIYEP-SIEQIKFMVRQVARQRQGSDVHVNIQIT 200

Query: 92  GGEPLL-QVDVPLIQALNKRG-FEIAVETNG-------TIEPPQGIDWI 131
           GGEP + +  V +++A+ + G   I + TNG          PP  ID++
Sbjct: 201 GGEPTVREDLVDVVKAIREAGAHYIQLNTNGINVARRYLDNPPGAIDYV 249


>gi|323703874|ref|ZP_08115508.1| molybdenum cofactor biosynthesis protein A [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531162|gb|EGB21067.1| molybdenum cofactor biosynthesis protein A [Desulfotomaculum
           nigrificans DSM 574]
          Length = 325

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 20/107 (18%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +C +C       Q       ++++   +++     G ++ R   +TG
Sbjct: 10  NYLRISVTDRCNLRCVYCMPPEGVKQTPHWEILSLEEFGRVVDAASDIGIRKVR---ITG 66

Query: 93  GEPLLQVDV----------PLIQALNKRGFEIAVETNGTIEPPQGID 129
           GEPL++ ++          PLI        +I++ TNG +      D
Sbjct: 67  GEPLVRKNIIDLFRYIAANPLID-------DISITTNGILFADMAAD 106


>gi|322391329|ref|ZP_08064799.1| pyruvate formate-lyase activating enzyme [Streptococcus peroris
           ATCC 700780]
 gi|321145755|gb|EFX41146.1| pyruvate formate-lyase activating enzyme [Streptococcus peroris
           ATCC 700780]
          Length = 264

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 21/99 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT +         R   D L + +  +   G
Sbjct: 33  VF--LQGC-----------QMRCQYCHNPDT-WAMETNKSRVRTVDDVLEEALRYRGFWG 78

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           +K G    ++GGE LLQ+D  + L     ++G    ++T
Sbjct: 79  DKGG--ITVSGGEALLQIDFLIALFTKAKEKGIHCTLDT 115


>gi|289641945|ref|ZP_06474100.1| Radical SAM domain protein [Frankia symbiont of Datisca glomerata]
 gi|289508245|gb|EFD29189.1| Radical SAM domain protein [Frankia symbiont of Datisca glomerata]
          Length = 410

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 22/76 (28%), Gaps = 7/76 (9%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A   +        Q     R       D I E   +      + +L 
Sbjct: 44  CNLTCDYCYVYQMADQTW------HSQPVTMSRSTAASAIDRIAEHASSHHLPLIHVILH 97

Query: 92  GGEPLLQVDVPLIQAL 107
           GGEPLL      I  L
Sbjct: 98  GGEPLL-AGREFISYL 112


>gi|208434680|ref|YP_002266346.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           G27]
 gi|208432609|gb|ACI27480.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
           G27]
          Length = 293

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 20/146 (13%)

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIA--VETN 119
               +D + + ++     G K+ R   +TGGEPLL+      I  L+    E+A  + TN
Sbjct: 13  ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRKGLDEFIAKLHAYNKEVALVLSTN 69

Query: 120 GTIEPPQGID-------WICV---SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
           G +      D        + V   S K+   LKI     LK     +  S    +     
Sbjct: 70  GFLLKKMAKDLKNAGLSQVNVSLDSLKSDRVLKISQKDALKNTLEGIEESLRVGLKLKLN 129

Query: 170 RFSLQPMDGPFLEENTNLAISYCFQN 195
                 +     +E   L + Y  + 
Sbjct: 130 TVV---IKSVNDDEILEL-LEYAKKR 151


>gi|254255226|ref|ZP_04948542.1| Coenzyme PQQ biosynthesis protein E [Burkholderia dolosa AUO158]
 gi|124900963|gb|EAY71713.1| Coenzyme PQQ biosynthesis protein E [Burkholderia dolosa AUO158]
          Length = 376

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
            LW   E   R    C FC   +  +   + G   +      +I +    G  +      
Sbjct: 15  PLWLLAELTYRCPLHCAFC---YNPVDFASHGAELDTGTWRTVIRDARALGAAQ---IGF 68

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           +GGEPL + D+  L++     GF   + T+G
Sbjct: 69  SGGEPLQRGDLEALVEHARALGFYTNLITSG 99


>gi|2626813|dbj|BAA23391.1| YfkA [Bacillus subtilis]
          Length = 154

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 13/92 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   +EE         R   +TGGEP+L +      
Sbjct: 45  RCEHCAVGYT-LQPKDPNALPIDLLLKRLEEI-----PRLRSISITGGEPMLSLKSVKEY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
            VPL++  ++RG    + +N T++  +  +WI
Sbjct: 99  VVPLLKYAHERGVRTQINSNLTLDI-ERYEWI 129


>gi|62286584|sp|Q9X758|ANSME_KLEPN RecName: Full=Anaerobic sulfatase-maturating enzyme; Short=AnSME;
           AltName: Full=Arylsulfatase-activating protein; AltName:
           Full=Ser-type sulfatase-activating enzyme
 gi|4586202|emb|CAB40960.1| arylsulfatase activating protein [Klebsiella pneumoniae]
          Length = 395

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 26/102 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC--V 89
           CNL            CR+C   +     T   + +  +L   I           R    V
Sbjct: 35  CNL-----------ACRYC---YYPQDETPVNKMDDARLEQFIRRYIAAQPAGAREINFV 80

Query: 90  LTGGEPLLQVDVPLIQ---ALNKR----GFEI--AVETNGTI 122
             GGEPLL   +   +   AL  R    G  I  +++TNGT+
Sbjct: 81  WQGGEPLL-AGLSFYKKALALQARYAPDGVTISNSLQTNGTL 121


>gi|330506877|ref|YP_004383305.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6]
 gi|328927685|gb|AEB67487.1| radical SAM domain protein [Methanosaeta concilii GP-6]
          Length = 364

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 25/97 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C     G      G     +  D++ E       +G     T
Sbjct: 17  CNL-----------RCSYCY-AHGGESRASMGWVTARRAIDVMAE-----CFDGFKIQFT 59

Query: 92  GGEPLLQVDVPLIQA----LNKRGFEI--AVETNGTI 122
           GGEPLL  ++ LI+     L++ G ++   V+TN T+
Sbjct: 60  GGEPLL--NLGLIERAVDYLDEMGLQVPCQVQTNATL 94


>gi|314934315|ref|ZP_07841674.1| molybdenum cofactor biosynthesis protein A [Staphylococcus caprae
           C87]
 gi|313652245|gb|EFS16008.1| molybdenum cofactor biosynthesis protein A [Staphylococcus caprae
           C87]
          Length = 341

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 41  DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C   +  G       +  +    ++     I  E   +   +TGGEPLL+ 
Sbjct: 23  DRCNFRCDYCMPKEIFGDDFVFLPKEELLTFEEMTRISRIYAELGVKKIRITGGEPLLRR 82

Query: 100 DV-PLIQALNK-RGFE-IAVETNG 120
           ++  LI+ LN+  G E I + TNG
Sbjct: 83  NLYQLIEQLNEIEGIEDIGLTTNG 106


>gi|305663591|ref|YP_003859879.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378160|gb|ADM27999.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
          Length = 584

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 19/105 (18%)

Query: 32  CNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           C L  G                 +R    C +C   F    G      ++D + +++ E 
Sbjct: 113 CPLNCGLCPLHKTHTALLNIVVTNRCDLSCWYC-FYFAERAGYVYEP-SIDDIVNMV-EA 169

Query: 78  WITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFE-IAVETNG 120
                       LTGGEP L +  V +++ L + G   I + T+G
Sbjct: 170 LRKQPNIVLTVQLTGGEPTLREDLVDIVRKLRELGVRHIQLNTHG 214


>gi|260886563|ref|ZP_05897826.1| nitrite reductase heme biosynthesis J protein [Selenomonas
           sputigena ATCC 35185]
 gi|330839604|ref|YP_004414184.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185]
 gi|260863706|gb|EEX78206.1| nitrite reductase heme biosynthesis J protein [Selenomonas
           sputigena ATCC 35185]
 gi|329747368|gb|AEC00725.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185]
          Length = 398

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A+       +     T+  R  +D LAD                + +
Sbjct: 47  CNLKCRHCYMNSDAK------KYQNELTTEEARRFIDDLAD----------FRVPVLLFS 90

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D   L +    +G    + TNGT+
Sbjct: 91  GGEPLLRPDFFELAEHAAAKGVRPTLSTNGTL 122


>gi|194291439|ref|YP_002007346.1| pyrroloquinoline quinone biosynthesis protein pqqe [Cupriavidus
           taiwanensis LMG 19424]
 gi|193225343|emb|CAQ71287.1| Quinoprotein ethanol dehydrogenase; PQQ dehydrogenase family
           [Cupriavidus taiwanensis LMG 19424]
          Length = 391

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R    C FC    D+           +  Q  D+  +    G  +     
Sbjct: 17  PLWLLAELTYRCPLHCAFCSNPVDYAR----HAEELDTAQWCDVFTQARALGAVQLG--- 69

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           L+GGEPLL+ D+  L++     GF   + T+G
Sbjct: 70  LSGGEPLLRKDLETLVRHARGLGFYTNLITSG 101


>gi|253700573|ref|YP_003021762.1| molybdenum cofactor biosynthesis protein A [Geobacter sp. M21]
 gi|251775423|gb|ACT18004.1| molybdenum cofactor biosynthesis protein A [Geobacter sp. M21]
          Length = 326

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 25/180 (13%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLT 91
           N       DR + +CR+C     G++     +  +   L  +  E    G ++ R   +T
Sbjct: 12  NYLRLSVTDRCNLRCRYC-MPEEGVEKLDHSQVLSYADLLRISTEAVAAGIEKIR---VT 67

Query: 92  GGEPLLQVDVPLIQALNKRG-----FEIAVETNGTI--EPPQGIDWICV--------SPK 136
           GGEPL++  +  I  L + G      E+ + TNG +  E  QG+    V        S K
Sbjct: 68  GGEPLVRKGI--ISFLERLGALPGLKELVLTTNGLLLKEMAQGLREAGVQRLNISLDSLK 125

Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196
                 I  G ELK V   +  + +   GF   + ++  M G   +E  +  +    + P
Sbjct: 126 PEIFASITRGGELKRVLDGLEAAEK--AGFPPHKINVVVMRGINDDEILDF-VELTMKRP 182


>gi|168207240|ref|ZP_02633245.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
           E str. JGS1987]
 gi|170661412|gb|EDT14095.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
           E str. JGS1987]
          Length = 331

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D+ + +C +C                +D++  +++E    G K+ R   LTGGEPL++  
Sbjct: 26  DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 82

Query: 101 VPLIQALNKRGFEIAVE-----TNG 120
           +  +  +        +E     TNG
Sbjct: 83  I--VDLIKNINKIPEIEEICLTTNG 105


>gi|18310772|ref|NP_562706.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
           str. 13]
 gi|20141618|sp|Q9WX96|MOAA_CLOPE RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|18145453|dbj|BAB81496.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
           str. 13]
          Length = 323

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D+ + +C +C                +D++  +++E    G K+ R   LTGGEPL++  
Sbjct: 18  DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 74

Query: 101 VPLIQALNKRGFEIAVE-----TNG 120
           +  +  +        +E     TNG
Sbjct: 75  I--VDLIKNINKIPEIEEICLTTNG 97


>gi|219669369|ref|YP_002459804.1| radical SAM protein [Desulfitobacterium hafniense DCB-2]
 gi|219539629|gb|ACL21368.1| Radical SAM domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 332

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 49  FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL 107
           +CD  +           N  +   L+E+    G    +  + +GGEPLL+ D+  L+   
Sbjct: 14  YCDHCYRDAGCQAEEELNTAEAKTLLEQIARAG---FKIMIFSGGEPLLRPDIVELVAYA 70

Query: 108 NKRGFEIAVETNGTI 122
              G      TNGT+
Sbjct: 71  TSLGLRPVFGTNGTL 85


>gi|303245812|ref|ZP_07332095.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
 gi|302493075|gb|EFL52940.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
          Length = 373

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR        +    G  ++  +   LI+    TG       + T
Sbjct: 37  CNLAC--------KHCR----AEACLDPWPGE-FDTAEAKALIDTFPETG---SPIIIFT 80

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D+  L++    R     +  NGT+
Sbjct: 81  GGEPLLRPDIFDLVRHARSRDLRCVMAPNGTL 112


>gi|257056309|ref|YP_003134141.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Saccharomonospora viridis DSM 43017]
 gi|256586181|gb|ACU97314.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Saccharomonospora viridis DSM 43017]
          Length = 334

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 20/114 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C             R  V+Q    IEE             + 
Sbjct: 36  CNL-----------SCPGCG-KIQHPASVLKQRMPVEQAVAAIEECG------APMVSIA 77

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144
           GGEPL+  D+  ++    +R   + + TN  +   + ID + + P       I 
Sbjct: 78  GGEPLMHPDIDTMVNEFVRRKKYVFLCTNAAL-LRRKIDKLDLKPSRYFAFAIH 130


>gi|295090053|emb|CBK76160.1| Pyruvate-formate lyase-activating enzyme [Clostridium cf.
           saccharolyticum K10]
          Length = 231

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 46  QCRFCDTDF--VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---D 100
            C  C TDF     +   G     ++L  ++ +     E  G    L+GGE + Q     
Sbjct: 14  ACGSC-TDFCISNARSIVGEEMEAEELVRILRQDRQFYEDSGGGVTLSGGEAMAQDMDYM 72

Query: 101 VPLIQALNKRGFEIAVETNG 120
             L+  L   G  + ++T G
Sbjct: 73  ENLLVRLQSEGIPVNMDTCG 92


>gi|182625681|ref|ZP_02953450.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
           D str. JGS1721]
 gi|177909083|gb|EDT71558.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
           D str. JGS1721]
          Length = 331

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D+ + +C +C                +D++  +++E    G K+ R   LTGGEPL++  
Sbjct: 26  DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 82

Query: 101 VPLIQALNKRGFEIAVE-----TNG 120
           V  +  +        +E     TNG
Sbjct: 83  V--VDLIKNINKIPEIEEICLTTNG 105


>gi|148269248|ref|YP_001243708.1| radical SAM domain-containing protein [Thermotoga petrophila RKU-1]
 gi|147734792|gb|ABQ46132.1| Radical SAM domain protein [Thermotoga petrophila RKU-1]
          Length = 482

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 21/92 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C   + G+ G K    + D++ D++++    G       ++T
Sbjct: 120 CNL-----------NCVGC---YAGLYGRKYE-LSHDEVRDILKQANDLGIYFF---IIT 161

Query: 92  GGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
           GGEP      + + +      F +   +NGT+
Sbjct: 162 GGEPFFWPHLMDIFEEFKDSYFLVY--SNGTL 191


>gi|108761286|ref|YP_628582.1| radical SAM domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108465166|gb|ABF90351.1| radical SAM domain protein [Myxococcus xanthus DK 1622]
          Length = 262

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 9/61 (14%)

Query: 90  LTGGEPLLQVDVP-LIQALNKRGF--EIAVETNGTIEPP------QGIDWICVSPKAGCD 140
           LTGGEP L  D+P ++ A+   G   +++V TNG +         + +D + +S      
Sbjct: 65  LTGGEPFLHPDLPAVLDAVRASGISPQVSVTTNGFLAQSAPDAVYERLDRMTLSVYTSAP 124

Query: 141 L 141
           L
Sbjct: 125 L 125


>gi|78044984|ref|YP_361022.1| radical SAM domain-containing protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997099|gb|ABB15998.1| radical SAM domain protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 459

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 25/109 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C   + G +  KG   + ++L  L  E    G     + VL+
Sbjct: 125 CNL-----------GCTGC---WAG-KYQKGPELSFERLDRLFNEAKELGIY---FIVLS 166

Query: 92  GGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGIDWIC----VSP 135
           GGEPL+      L +  N   F     TNGT+   +  D I      SP
Sbjct: 167 GGEPLMYERLFELFEKHNDMAFMAY--TNGTLIDEKMADKIAKVGNFSP 213


>gi|330810983|ref|YP_004355445.1| molybdenum cofactor biosynthesis protein A [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379091|gb|AEA70441.1| molybdenum cofactor biosynthesis protein A [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 322

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 29/167 (17%)

Query: 46  QCRFC--DTDF-VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
            C +C  D    V  Q           +A LIE   I   +      +TGGEPL+   + 
Sbjct: 24  ACTYCVPDGKRLVAAQDELSAEAMARGVAYLIEAAGIERLR------ITGGEPLVSPKLE 77

Query: 103 -LIQALNKRGFE-IAVETNG---TIEPPQGID---------WICVSPKAGCDLKIKGGQE 148
             + A+ + G E I++ TNG     + P  +D            + P A   +    G +
Sbjct: 78  RFMTAVGQMGLEDISLTTNGQLLAKKLPLLVDAGIRRINVSLDTLDPAAFRSIA--RGGD 135

Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
           L  V   +  +    +     + ++ P+ G  L++   L + YC + 
Sbjct: 136 LATVLDGMEQARAAGMKI---KVNMVPLRGQNLDQVMPL-LEYCLER 178


>gi|289523797|ref|ZP_06440651.1| putative pyruvate formate-lyase 1 activating enzyme [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502941|gb|EFD24105.1| putative pyruvate formate-lyase 1 activating enzyme [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 357

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 88  CVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
              +GG+PL+Q +  + L++   KRGF   +ET G    P
Sbjct: 172 VTFSGGDPLVQHEFTLELLKESKKRGFHTCLETEGHAAWP 211


>gi|189465169|ref|ZP_03013954.1| hypothetical protein BACINT_01514 [Bacteroides intestinalis DSM
           17393]
 gi|189437443|gb|EDV06428.1| hypothetical protein BACINT_01514 [Bacteroides intestinalis DSM
           17393]
          Length = 356

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 14/83 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C+ C +D   +   +      +     I+             ++T
Sbjct: 39  CNL-----------HCKHCGSDCKRMAAVED--MPAEDFLRTIDSITPYVNPNKVSIIIT 85

Query: 92  GGEPLLQVDVPLI-QALNKRGFE 113
           GGEPL++ D+  +  AL +RG+ 
Sbjct: 86  GGEPLMREDLEKVGLALYRRGYP 108


>gi|94264027|ref|ZP_01287827.1| Radical SAM [delta proteobacterium MLMS-1]
 gi|93455538|gb|EAT05725.1| Radical SAM [delta proteobacterium MLMS-1]
          Length = 351

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 16/92 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR        ++      ++  +   ++++            VL+
Sbjct: 16  CNLNC--------VHCR----SSSELEAKGHPDFDFTEAKRILDD---ITSYAQPVVVLS 60

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ DV  +     ++G  + + TNGT+
Sbjct: 61  GGEPLLRDDVFDIAAYGTEKGLRMCLATNGTL 92


>gi|329766702|ref|ZP_08258245.1| radical SAM domain-containing protein [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329136957|gb|EGG41250.1| radical SAM domain-containing protein [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 554

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 13/130 (10%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD--QLADLIEEQWITGEKEGRYCVLT 91
           L +    +R    C +C   +V         Y  D  Q+  +++         G    +T
Sbjct: 109 LANMIVTNRCDLTCWYC-FFYVKKGLEGAYMYEPDHTQVRGMMKTLKAERPIPGNSIQIT 167

Query: 92  GGEPLLQVDVP-LIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
           GGEP+L+ D+  +I+ + + G   + + TNG            + P+A  ++++ G   L
Sbjct: 168 GGEPMLREDIADVIKIMKEEGVDHVQMNTNGIRHA--------MDPEAAREVRLAGCNNL 219

Query: 150 KLVFPQVNVS 159
            L F  V   
Sbjct: 220 YLSFDGVTAR 229


>gi|323701819|ref|ZP_08113489.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
 gi|323533123|gb|EGB22992.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
          Length = 330

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 18/96 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL+         A C + D    G++       N ++   LI++     E   +  + +
Sbjct: 11  CNLYC--------AHC-YRD---AGVKAE--EELNTEEGKRLIDQ---IAEAGFKIMIFS 53

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           GGEPL++ D+  L+     +G      TNGT+  P+
Sbjct: 54  GGEPLMRPDIFELVAYAKSKGLRPVFGTNGTLITPE 89


>gi|257066928|ref|YP_003153184.1| molybdenum cofactor biosynthesis protein A [Anaerococcus prevotii
           DSM 20548]
 gi|256798808|gb|ACV29463.1| molybdenum cofactor biosynthesis protein A [Anaerococcus prevotii
           DSM 20548]
          Length = 312

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 14/89 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C++C    +G  G K  R+ ++    +++E   I      R   LTGGEP  + 
Sbjct: 18  DRCNFRCKYC----MGEDGIKLLRHEDILTFEEIVETAQIMAGLGIRKIRLTGGEPFARR 73

Query: 100 DV-PLIQALNKRGFEIAVE-----TNGTI 122
            V  LI+ L++      +E     TNG++
Sbjct: 74  GVMDLIKKLSQIP---EIEDLAITTNGSM 99


>gi|254281851|ref|ZP_04956819.1| putative oxygen-independent coproporphyrinogen III oxidase [gamma
           proteobacterium NOR51-B]
 gi|219678054|gb|EED34403.1| putative oxygen-independent coproporphyrinogen III oxidase [gamma
           proteobacterium NOR51-B]
          Length = 383

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 10/106 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +   G +      Y    LAD+  ++     +      + 
Sbjct: 9   PLALYVHIPWCERKCPYCDFNSHEGFKPDLEPVYVAALLADIEAQEQWIDSRPIASIFIG 68

Query: 92  GGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEPPQGI 128
           GG P L     + + L           G EI +ETN G+ E  + I
Sbjct: 69  GGTPSLFSADAIGKLLDGVARVAHLPAGTEITLETNPGSAEASRYI 114


>gi|153869921|ref|ZP_01999428.1| heme biosynthesis protein [Beggiatoa sp. PS]
 gi|152073610|gb|EDN70569.1| heme biosynthesis protein [Beggiatoa sp. PS]
          Length = 482

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 30/134 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +                  D+L +++++    G     +   +
Sbjct: 143 CNLNC--------VHCYW--------PNHFTRHIPKDKLFNILDQLSDMG---SLHLSFS 183

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
           GGE LL  + + +++   K  F + + TNGT+          +S K   +L+     E++
Sbjct: 184 GGESLLHPNFIEIVRYARKLDFSVTIMTNGTL----------LSKKLIYELRQLAVAEIQ 233

Query: 151 LVFPQVNVSPENYI 164
           +    ++ S  + I
Sbjct: 234 VSLYSMDASVHDAI 247


>gi|124267773|ref|YP_001021777.1| pyrroloquinoline quinone biosynthesis protein PqqE [Methylibium
           petroleiphilum PM1]
 gi|124260548|gb|ABM95542.1| coenzyme PQQ synthesis protein E [Methylibium petroleiphilum PM1]
          Length = 414

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            +W   E   +    C FC   T++    G  G     +    +  E    G  +  +  
Sbjct: 20  PMWLLAELTYKCPLHCVFCSNPTNYADHLGEIG----TEDWKRVFREARQMGAVQLGF-- 73

Query: 90  LTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
            +GGEPLL+ D+  L+    + G+   + T+G
Sbjct: 74  -SGGEPLLRDDLEELVAEARQLGYYTNLITSG 104


>gi|301627665|ref|XP_002942990.1| PREDICTED: molybdenum cofactor biosynthesis protein 1-like [Xenopus
           (Silurana) tropicalis]
          Length = 649

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 15/113 (13%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGT-KGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           N       ++ + +C++C     G+Q T K       ++  L       G  + R   LT
Sbjct: 73  NYLRISLTEKCNLRCQYC-MPEEGVQLTPKSELLTTQEIVALARLFVQEGVNKIR---LT 128

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG---TIEPP----QGIDWICVS 134
           GGEPL++ D V ++  L K  G + IA+ TNG     + P     G+D + +S
Sbjct: 129 GGEPLIRPDVVDIVAQLRKLEGLKTIALTTNGINLARQLPKLKDAGLDVLNIS 181


>gi|225026051|ref|ZP_03715243.1| hypothetical protein EUBHAL_00290 [Eubacterium hallii DSM 3353]
 gi|224956626|gb|EEG37835.1| hypothetical protein EUBHAL_00290 [Eubacterium hallii DSM 3353]
          Length = 304

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118
           +G    V  + D++ +  +  E+ G    L+GGE L Q D    L+ A  + G     ET
Sbjct: 108 EGEEKTVQGVLDVVLQDKVFYEESGGGITLSGGEMLYQPDFALQLLLAAKEEGLHTCCET 167

Query: 119 NGTI------EPPQGIDWICVSPKAGCDLKIKGG 146
            G +      +  + +D+I    K     K K G
Sbjct: 168 TGFLKTELFAKIIEQVDYILFDMKHWNSKKHKEG 201


>gi|168210846|ref|ZP_02636471.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
           B str. ATCC 3626]
 gi|170711112|gb|EDT23294.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
           B str. ATCC 3626]
          Length = 331

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D+ + +C +C                +D++  +++E    G K+ R   LTGGEPL++  
Sbjct: 26  DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 82

Query: 101 VPLIQALNKRGFEIAVE-----TNG 120
           V  +  +        +E     TNG
Sbjct: 83  V--VDLIKNINKIPEIEEICLTTNG 105


>gi|116695408|ref|YP_840984.1| molybdopterin biosynthesis protein [Ralstonia eutropha H16]
 gi|113529907|emb|CAJ96254.1| molybdopterin biosynthesis protein [Ralstonia eutropha H16]
          Length = 381

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 22/97 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           D+ + +C +C        D  F+  +     R +  +L  ++      G ++ R   LTG
Sbjct: 59  DQCNFRCTYCMPKERFGRDYPFLSPE----QRLSDAELLRIVRAFVGLGVEKVR---LTG 111

Query: 93  GEPLLQVDVP-LIQA------LNKRGFEIAVETNGTI 122
           GEPLL+  +  L++       L+ R  E+A+ TNG++
Sbjct: 112 GEPLLRKGIESLVERIAAMRTLDGRQVEVAMTTNGSL 148


>gi|110798850|ref|YP_696474.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
           ATCC 13124]
 gi|123148649|sp|Q0TPG6|MOAA_CLOP1 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|110673497|gb|ABG82484.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
           ATCC 13124]
          Length = 323

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D+ + +C +C                +D++  +++E    G K+ R   LTGGEPL++  
Sbjct: 18  DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 74

Query: 101 VPLIQALNKRGFEIAVE-----TNG 120
           V  +  +        +E     TNG
Sbjct: 75  V--VDLIKNINKIPEIEEICLTTNG 97


>gi|104780794|ref|YP_607292.1| molybdenum cofactor biosynthesis protein A [Pseudomonas entomophila
           L48]
 gi|95109781|emb|CAK14486.1| putative molybdenum cofactor biosynthesis protein A [Pseudomonas
           entomophila L48]
          Length = 322

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 27/166 (16%)

Query: 46  QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP- 102
            C +C  D   +            D LA  +         E     +TGGEPL+   +  
Sbjct: 24  ACTYCVPDGKRLV---AAQDELTADALARGVAYLVEAAGIERLR--ITGGEPLISPRLEA 78

Query: 103 LIQALNKRGFE-IAVETNG---TIEPP---------QGIDWICVSPKAGCDLKIKGGQEL 149
            ++A+   G E I++ TNG   + + P           +    + P A   +    G +L
Sbjct: 79  FLKAVAGLGLEDISLTTNGQLLSRKLPLLREAGIRRLNVSLDTLDPGAFRSIA--RGGDL 136

Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
             V   +  +    +     + ++ PM G  L++   L + YC Q 
Sbjct: 137 ASVLAGMEQASAAGMAI---KVNMVPMRGQNLDQVVPL-LDYCLQR 178


>gi|311897847|dbj|BAJ30255.1| hypothetical protein KSE_44720 [Kitasatospora setae KM-6054]
          Length = 793

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 26/105 (24%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL----IEEQWITGEKEGRY 87
           C+L          A   +          ++  R   D++ +     I E   T      +
Sbjct: 18  CDLACDHCYVYEHADTSW----------SRKARAASDEVLERTAGRIGEHARTHRLPAVH 67

Query: 88  CVLTGGEPLL----------QVDVPLIQALNKRGFEIAVETNGTI 122
            VL GGEPLL          ++    + A       I   TNG +
Sbjct: 68  VVLHGGEPLLAGPERLRRAAELLRAALPAGCALDLRIH--TNGVL 110


>gi|242371916|ref|ZP_04817490.1| molybdenum (Mo2+) cofactor biosynthesis protein A [Staphylococcus
           epidermidis M23864:W1]
 gi|242350423|gb|EES42024.1| molybdenum (Mo2+) cofactor biosynthesis protein A [Staphylococcus
           epidermidis M23864:W1]
          Length = 340

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D DFV +   K      D++  +       G K+ R   +TGG
Sbjct: 22  DRCNFRCDYCMPKEIFGD-DFVFL--PKDELLTFDEMTRISRIYAELGVKKIR---ITGG 75

Query: 94  EPLLQVDV-PLIQALNK-RGFE-IAVETNG 120
           EPLL+ ++  LI+ LN+  G E I + TNG
Sbjct: 76  EPLLRRNLYQLIEQLNEIEGIEDIGLTTNG 105


>gi|254372721|ref|ZP_04988210.1| hypothetical protein FTCG_00288 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570448|gb|EDN36102.1| hypothetical protein FTCG_00288 [Francisella novicida GA99-3549]
          Length = 361

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 16/92 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       R S+ C          +      ++ ++   +I+             VL+
Sbjct: 16  CNLKCV--HCRSSSDC----------EVLGHPDFSTEEGFRIIDSIVAFA---NPVLVLS 60

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D+  L +    +G  +A+ TNG++
Sbjct: 61  GGEPLLRTDIFELAEYGTNKGLRMALATNGSL 92


>gi|86742050|ref|YP_482450.1| radical SAM family protein [Frankia sp. CcI3]
 gi|86568912|gb|ABD12721.1| Radical SAM [Frankia sp. CcI3]
          Length = 374

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 25/133 (18%)

Query: 32  CNLWSGREQDRLSAQCR-FCDTDFV--GIQGTKGGRYNVDQLADLIEEQWI-TGEKEGRY 87
           CNL           +C  + D+      +   +  + +++    L++E    TG  E  Y
Sbjct: 23  CNLTC--------RECWMYGDSAAESGWLADVRRDQMSLEMWTALVDELAADTGTPETTY 74

Query: 88  CVLTGGEPLLQVD-VPLIQALNKRGFEIAVE--TNGTIE-------PPQGIDWICVS--- 134
             + GGEPL+    V L++   +R     ++  TNGT+           GID + +S   
Sbjct: 75  LTMMGGEPLMHDHAVELMRIAKERLPSCNLDMSTNGTLLDRHAAGIVASGIDDVYLSVDG 134

Query: 135 PKAGCDLKIKGGQ 147
           P    +  I+G  
Sbjct: 135 PSPEVNDPIRGRN 147


>gi|78044002|ref|YP_359727.1| putative pyruvate formate-lyase activating enzyme [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996117|gb|ABB15016.1| putative pyruvate formate-lyase activating enzyme [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 281

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 36/131 (27%)

Query: 22  RVAVFCRFSGCNLWS------------------------------GREQDRLSAQCRFCD 51
           R+A+F    GCNL                                  +     A C+ CD
Sbjct: 20  RMAIF--LQGCNLDCLYCHNPETQKYCQNCGRCVEQCPAGALTNLDGKVTWDKAICQGCD 77

Query: 52  TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNK 109
                   +   +  + +  DL+    +  E        +GGE  LQ D  L   + L +
Sbjct: 78  RCLEVCPHSSTPKTTLWEAEDLVA-YILENEVFLDGVTFSGGECTLQADFILEVSKKLKE 136

Query: 110 R-GFEIAVETN 119
           +    + V+TN
Sbjct: 137 KSNLTVFVDTN 147


>gi|313897595|ref|ZP_07831137.1| radical SAM domain protein [Clostridium sp. HGF2]
 gi|312957547|gb|EFR39173.1| radical SAM domain protein [Clostridium sp. HGF2]
          Length = 287

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 61/175 (34%), Gaps = 29/175 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC          K  R +V Q + +I E          + +  
Sbjct: 14  CNL-----------SCSFC-----IQNQRKPRRMSVAQFSHVIREIKPYTGHVYLHVL-- 55

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE-- 148
            GEPL   D+   +Q  +++  ++ + TNGT+      D +  S     ++ +    E  
Sbjct: 56  -GEPLSHPDLKTFLQICDEQEMQVNLTTNGTL-LNACRDVLMNSRLRQVNVSLHSFPEHE 113

Query: 149 ----LKLVFPQVNVSPENYIGFDFERFSLQ--PMDGPFLEENTNLAISYCFQNPK 197
               L+ VF       +  +   +  +S+Q   + G        L   Y   +P+
Sbjct: 114 QPQYLEHVFSVCEELAQKGVHISYRLWSVQNGQLSGESTRLLQQLTQHYHISHPQ 168


>gi|312137070|ref|YP_004004407.1| radical sam domain protein [Methanothermus fervidus DSM 2088]
 gi|311224789|gb|ADP77645.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088]
          Length = 399

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 20/109 (18%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF    GCNL           +C  C  + V      G      + A+++    +  + +
Sbjct: 169 VF--THGCNL-----------RCPQC-QNHVIAFTAGGYLLKAQKTAEIL--LNLKNKYK 212

Query: 85  GRYCVLTGGEPLLQV--DVPLIQAL--NKRGFEIAVETNGTIEPPQGID 129
                ++GGE  L     + LI+++        I V+TNGTI   + ID
Sbjct: 213 VNRIAISGGECTLNKKWLIELIKSIREKDENVHIHVDTNGTILTKKYID 261


>gi|241764970|ref|ZP_04762968.1| molybdenum cofactor biosynthesis protein A [Acidovorax delafieldii
           2AN]
 gi|241365443|gb|EER60224.1| molybdenum cofactor biosynthesis protein A [Acidovorax delafieldii
           2AN]
          Length = 378

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 25/138 (18%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D D+  +        + +++  L       G ++ R   LTGGE
Sbjct: 48  DRCNFRCNYCMPKEVFDKDYAYL--PHNALLSFEEITRLARLFMAHGVRKIR---LTGGE 102

Query: 95  PLLQVDV-PLIQALNKR------GFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ +V  L+  L +         ++ + TNG++           G+  + VS     D
Sbjct: 103 PLLRKNVEELVAQLAQLRTIDGTPPDLTLTTNGSLLARKARALREAGLSRVTVSLDGLDD 162

Query: 141 LKIKGGQELKLVFPQVNV 158
              +   ++      V  
Sbjct: 163 AVFRRMNDVDFPVEDVLA 180


>gi|220905081|ref|YP_002480393.1| Radical SAM domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869380|gb|ACL49715.1| Radical SAM domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 519

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 33/106 (31%), Gaps = 16/106 (15%)

Query: 30  SGCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
            GC    G         C             C   + G     G       L  L  +  
Sbjct: 88  QGCPFDCGLCPSHAQHTCTGLVEVTMRCNMACPVCYAGAGNVSGTLSADPDLNCLAVQMD 147

Query: 79  ITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKR---GFEIAVETNG 120
                 G     ++GGEP ++ D+P I AL +    G  + V TNG
Sbjct: 148 ALKTASGPCNVQISGGEPTVREDLPAIIALARERAFGL-VQVNTNG 192


>gi|261409709|ref|YP_003245950.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp.
           Y412MC10]
 gi|261286172|gb|ACX68143.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp.
           Y412MC10]
          Length = 334

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C     G++     +  + +++A ++      G  + R   LTGGEPL++ 
Sbjct: 22  DRCNLRCVYC-MPEEGMEFQPHDQIMSYEEIASIMRVLAPMGVSKVR---LTGGEPLVRK 77

Query: 100 DVP-LIQALNK-RGFE-IAVETNGTIEPPQG 127
           D+  L+  +    G + I++ TNG + P + 
Sbjct: 78  DLETLVHQIASIEGVQDISLTTNGIMLPSKA 108


>gi|163119675|ref|YP_080904.2| iron-binding, putative oxidoreductase [Bacillus licheniformis ATCC
           14580]
 gi|145903185|gb|AAU25266.2| iron-binding, putative oxidoreductase [Bacillus licheniformis ATCC
           14580]
          Length = 154

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 28/113 (24%)

Query: 1   MKLYSIKEIFLTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
           MK+ +I  I  ++  GEG       VF   +GC        ++ S               
Sbjct: 1   MKVMNI--IHDSIVDGEGLRT---VVF--LAGCPHMCEGCHNKQS------------WNI 41

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKR 110
             G   +VD++ + I       +        +GGEPLL     + L + + + 
Sbjct: 42  NNGFDMSVDEVFEEIM------KNPLTNVTYSGGEPLLHAGELIELSEKIKQH 88


>gi|194333072|ref|YP_002014932.1| type 11 methyltransferase [Prosthecochloris aestuarii DSM 271]
 gi|194310890|gb|ACF45285.1| Methyltransferase type 11 [Prosthecochloris aestuarii DSM 271]
          Length = 1002

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           +R +  C  C          +      +++ +L EE W  G    R   LTGGEPL+  +
Sbjct: 89  NRCNMACSHC---LFASSPEEQEELCAERILELAEEAWGAG---CRLFALTGGEPLVHRE 142

Query: 101 V-PLIQALNK-RGFEIAVETNGTIE 123
           +  +I+ L   +   + + TNG + 
Sbjct: 143 INTIIRGLLDLQDAHVVILTNGLLA 167


>gi|310778923|ref|YP_003967256.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926]
 gi|309748246|gb|ADO82908.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926]
          Length = 287

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 20/92 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC          K     +D    ++ E     +    +    
Sbjct: 15  CNL-----------SCHFC-----PKSKRKLEYMKLDSFGKILREIKPFTDYIYLHVK-- 56

Query: 92  GGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
            GEPLL       +      GF++ + TNG+ 
Sbjct: 57  -GEPLLHPQLEEFLDLAYVYGFKVNITTNGSF 87


>gi|292655279|ref|YP_003535176.1| coenzyme PQQ synthesis protein E-like protein [Haloferax volcanii
           DS2]
 gi|291371422|gb|ADE03649.1| coenzyme PQQ synthesis protein E homolog [Haloferax volcanii DS2]
          Length = 402

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL+           C      + G       G  +  +   LI++       +    + 
Sbjct: 48  CNLYC--------EHC------YAGADLDPAQGELSTAEAKGLIDDL---AAYDVPVLLF 90

Query: 91  TGGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122
           +GGEPL+ +  V L+      G    + TNGT+
Sbjct: 91  SGGEPLVREDLVELVDYATDAGIRAVLSTNGTL 123


>gi|284050768|ref|ZP_06380978.1| arylsulfatase regulator, AslB [Arthrospira platensis str. Paraca]
 gi|291572047|dbj|BAI94319.1| putative arylsulfatase regulatory protein [Arthrospira platensis
           NIES-39]
          Length = 410

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 25/111 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG--RYNVDQLADLIEEQWITGEKEGRYCV 89
           CNL            C +C   +  ++        +++D  A  IE       K     +
Sbjct: 37  CNL-----------HCSYC---YAEVKTPGKEVPLFDIDTFAIAIERIAEYSRKSHIELI 82

Query: 90  LTGGEPLLQVD-------VPLIQALNKRGFEI--AVETNGTIEPPQGIDWI 131
             GGEPLLQ D          ++ L  +G  +   +++N T+   + ID  
Sbjct: 83  FHGGEPLLQSDQWYDRACTLAVKILGDKGKTVDFGLQSNLTLLNDEHIDVF 133


>gi|153864667|ref|ZP_01997490.1| heme d1 biosynthesis protein [Beggiatoa sp. SS]
 gi|152145837|gb|EDN72509.1| heme d1 biosynthesis protein [Beggiatoa sp. SS]
          Length = 364

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 16/100 (16%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT--------GEKEG 85
           L+     +R + +C  C               + + L  ++ +            G++  
Sbjct: 29  LFQWHITERCNLRCAHC-----YQDNYARDELSFENLLTILVQYKTLLATLSERRGKRLS 83

Query: 86  RYCVLTGGEPLLQVD-VPLIQAL--NKRGFEIAVETNGTI 122
            +  +TGGEP  + D + L++    +++ F  A+ TNGT 
Sbjct: 84  AHITVTGGEPFARRDFLDLLEIFAAHRKLFSFAILTNGTF 123


>gi|51891252|ref|YP_073943.1| pyruvate formate lyase activating enzyme [Symbiobacterium
           thermophilum IAM 14863]
 gi|51854941|dbj|BAD39099.1| pyruvate formate lyase activating enzyme [Symbiobacterium
           thermophilum IAM 14863]
          Length = 255

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 23/107 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC L           +CR+C   DT        +G    V  L + I+      
Sbjct: 37  VFV--QGCPL-----------RCRYCHNPDT----WDPGQGAEVTVGSLIEEIQSYVPYM 79

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQ 126
           +  G    ++GGEPLLQ D    L     +     A++T+G   PP+
Sbjct: 80  KFSGGGVTVSGGEPLLQPDFVADLFAECRRLFIHTALDTSG-FAPPE 125


>gi|322390044|ref|ZP_08063580.1| pyruvate formate-lyase activating enzyme [Streptococcus
           parasanguinis ATCC 903]
 gi|321143251|gb|EFX38693.1| pyruvate formate-lyase activating enzyme [Streptococcus
           parasanguinis ATCC 903]
          Length = 264

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 21/99 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT +         R   D L + +  +   G
Sbjct: 33  VF--LQGC-----------QMRCQYCHNPDT-WAMETNKSRERTVDDVLEEALRYRGFWG 78

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           +K G    ++GGE LLQ+D  + L     + G    ++T
Sbjct: 79  QKGG--ITVSGGEALLQIDFLIALFTKAQELGIHCTLDT 115


>gi|322420151|ref|YP_004199374.1| Radical SAM domain-containing protein [Geobacter sp. M18]
 gi|320126538|gb|ADW14098.1| Radical SAM domain protein [Geobacter sp. M18]
          Length = 409

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 18/94 (19%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C   F+        R ++D   ++        +       L GGEPLL  D
Sbjct: 29  DRCNLRCSYC---FIDCTPANDSRMSLDTAKEIARLLIENSQYPQVALHLYGGEPLLVDD 85

Query: 101 ----------VPLIQALNKRGFEIA--VETNGTI 122
                      PL Q   K G E+   + TNGT+
Sbjct: 86  AWISDFVGYARPLGQ---KHGKEVIFPLSTNGTL 116


>gi|303237453|ref|ZP_07324019.1| pyruvate formate-lyase 1-activating enzyme [Prevotella disiens
           FB035-09AN]
 gi|302482403|gb|EFL45432.1| pyruvate formate-lyase 1-activating enzyme [Prevotella disiens
           FB035-09AN]
          Length = 291

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 28/118 (23%)

Query: 8   EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
           E F ++ G G        VF    GC           + +C++C          +     
Sbjct: 58  ETFGSVDGPGIRFI----VF--LKGC-----------AMRCQYC----HNPDTWEPNSDT 96

Query: 67  VDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETN 119
           +    +L+E+        G+     ++GGE LLQ+D  LI+       +G    ++T+
Sbjct: 97  LTTADELLEKALRYKSYWGKNGGITVSGGESLLQIDF-LIEFFRKAKAKGINTCLDTS 153


>gi|262039026|ref|ZP_06012360.1| pyruvate formate-lyase 2-activating enzyme [Leptotrichia
           goodfellowii F0264]
 gi|261746936|gb|EEY34441.1| pyruvate formate-lyase 2-activating enzyme [Leptotrichia
           goodfellowii F0264]
          Length = 265

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 31/112 (27%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCD------------------TDFVGIQGTKGGRYNVDQL 70
           F GC L           +C++C                   +   G          ++++
Sbjct: 28  FKGCPL-----------RCKWCSNPETQKIENEVFYNEKEISPITGEYPKVAKLMTLNEI 76

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG 120
            D++ +        G    L+GGE L+ V+    L + L +     A+ET G
Sbjct: 77  FDIVMKDEKFYRNSGGGVTLSGGEILVNVEFAIKLFEKLKEEYINTAIETTG 128


>gi|225872692|ref|YP_002754149.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793648|gb|ACO33738.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196]
          Length = 329

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 10/106 (9%)

Query: 45  AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPL 103
           A+C  CD         K G      +A LI+E         R+   TGGEPLL+ D   +
Sbjct: 29  ARCISCD---YWKTHWKDGLNTARAIA-LIDEIHDLSIGSLRF---TGGEPLLRKDFFEV 81

Query: 104 IQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           ++    R F +I ++TNG +   +  + +  SP    ++ I G +E
Sbjct: 82  LERSQARRFKKIVLQTNG-LLLERFHEKVNASPITHINVSIDGMRE 126


>gi|224371980|ref|YP_002606146.1| PflC2 [Desulfobacterium autotrophicum HRM2]
 gi|223694699|gb|ACN17982.1| PflC2 [Desulfobacterium autotrophicum HRM2]
          Length = 302

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETN 119
           G  ++ D L ++I++  +  E  G     +GGEPL+Q      L++   + G   AV+T+
Sbjct: 105 GRCHSTDSLMEMIKKDRLFYESSGGGVTFSGGEPLVQWRSLDRLLRGCTRLGIHTAVDTS 164

Query: 120 G 120
           G
Sbjct: 165 G 165


>gi|94266923|ref|ZP_01290577.1| Radical SAM [delta proteobacterium MLMS-1]
 gi|93452399|gb|EAT03016.1| Radical SAM [delta proteobacterium MLMS-1]
          Length = 351

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 16/92 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR        ++      ++  +   ++++            VL+
Sbjct: 16  CNLNC--------VHCR----SSSELEAKGHPDFDFTEAKRILDD---ITSYAQPVVVLS 60

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ DV  +     ++G  + + TNGT+
Sbjct: 61  GGEPLLRDDVFDIAAYGTEKGLRMCLATNGTL 92


>gi|89894967|ref|YP_518454.1| hypothetical protein DSY2221 [Desulfitobacterium hafniense Y51]
 gi|89334415|dbj|BAE84010.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 332

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 49  FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL 107
           +CD  +           N  +   L+E+    G    +  + +GGEPLL+ D+  L+   
Sbjct: 14  YCDHCYRDAGCQAEEELNTAEAKTLLEQIAKAG---FKIMIFSGGEPLLRPDIVELVAYA 70

Query: 108 NKRGFEIAVETNGTI 122
              G      TNGT+
Sbjct: 71  TSLGLRPVFGTNGTL 85


>gi|332158187|ref|YP_004423466.1| pyruvate formate-lyase activating enzyme related protein
           [Pyrococcus sp. NA2]
 gi|331033650|gb|AEC51462.1| pyruvate formate-lyase activating enzyme related protein
           [Pyrococcus sp. NA2]
          Length = 240

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 18/102 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
             GCNL      +   A+   C             + +V++L + +E      +      
Sbjct: 24  LCGCNLKCPFCHNWKIAERIGC------------FKLDVNELREEVEFASPLIDYFH--- 68

Query: 89  VLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGI 128
            +TGGEPL+Q      L + + + G +I++ +N TI  P  I
Sbjct: 69  -VTGGEPLVQWRELEVLFELIRETGVKISLNSNLTIVRPLEI 109


>gi|257792110|ref|YP_003182716.1| Radical SAM domain-containing protein [Eggerthella lenta DSM 2243]
 gi|257476007|gb|ACV56327.1| Radical SAM domain protein [Eggerthella lenta DSM 2243]
          Length = 435

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 29/85 (34%), Gaps = 16/85 (18%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV-DQLADLIEEQWI 79
           G    F   + CN             C FC   F   Q     R  V D   D ++    
Sbjct: 85  GSKTFFLSLA-CN-----------RSCYFC---FNANQADYADRLRVNDAWRDEVDAFAD 129

Query: 80  TGEKEGRYCVLTGGEPLLQVDVPLI 104
               E  +  LTGGEPLL  D  ++
Sbjct: 130 ACGGEVTHVGLTGGEPLLHADESVM 154


>gi|255316723|ref|ZP_05358306.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium difficile QCD-76w55]
          Length = 166

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 26/116 (22%)

Query: 9   IFLTL-QGEGGHAG-RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
           IF ++  G     G R+ VF   +GC             +C+ C           G  Y 
Sbjct: 12  IFESIVDG----TGLRLVVF--LAGC-----------QHRCKGCHNPETW-DINNGIMYT 53

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV------PLIQALNKRGFEIAV 116
            +++ + I +++       +    +GG+PLLQ +        + + L +  F+I +
Sbjct: 54  NEEVINFIVDKYKKCNGYYKGITFSGGDPLLQKEELEYIIKDIREKLKEYNFDIWL 109


>gi|167644029|ref|YP_001681692.1| molybdenum cofactor biosynthesis protein A [Caulobacter sp. K31]
 gi|167346459|gb|ABZ69194.1| molybdenum cofactor biosynthesis protein A [Caulobacter sp. K31]
          Length = 348

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 56/149 (37%), Gaps = 20/149 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          K    ++++L  L       G ++ R   LTGGEPL++  
Sbjct: 39  DRCDLRCTYC-MAEHMTFLPKAEVLSLEELDRLASTFVGLGVRKLR---LTGGEPLVRKG 94

Query: 101 V-PLIQAL---NKRGF--EIAVETNGTIEPPQGIDW-------ICVS---PKAGCDLKIK 144
           +  L++ L      G   E+ + TNGT       D        I VS    K     K+ 
Sbjct: 95  IMTLVERLSRHLATGALDELTLTTNGTQLAQHASDLARLGVKRINVSLDTLKPDLFRKLT 154

Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSL 173
            G +L  V   ++ +    I       +L
Sbjct: 155 RGGDLSKVLAGIDAALAAGIQVKINAVAL 183


>gi|300789974|ref|YP_003770265.1| Fe-S oxidoreductase [Amycolatopsis mediterranei U32]
 gi|299799488|gb|ADJ49863.1| predicted Fe-S oxidoreductase [Amycolatopsis mediterranei U32]
          Length = 373

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 30/106 (28%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN--------VDQLADLIEEQWITGEK 83
           CNL            C +C   ++  +   G R           D++   I E       
Sbjct: 23  CNL-----------ACDYC---YLYTKADHGWRLRPRALSPALADRIVGRIAEHVAAHRL 68

Query: 84  EGRYCVLTGGEPLLQVDVPLIQ----ALNKR---GFEIAVETNGTI 122
                +L GGEPLL   + L++    AL  R      ++++TNGT+
Sbjct: 69  PSLAVLLHGGEPLL-GGLSLVRQIAGALRDRVPAQVRLSMQTNGTL 113


>gi|158319621|ref|YP_001512128.1| molybdenum cofactor biosynthesis protein A [Alkaliphilus oremlandii
           OhILAs]
 gi|167011810|sp|A8MLW5|MOAA_ALKOO RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|158139820|gb|ABW18132.1| molybdenum cofactor biosynthesis protein A [Alkaliphilus oremlandii
           OhILAs]
          Length = 320

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       D  + +C++C       +        ++++ D+++     G  + R   +TG
Sbjct: 10  NYMRISITDLCNLRCQYCMPAEGICKKDHKEVLTLEEITDIVKAGVGLGIDKVR---ITG 66

Query: 93  GEPLLQVDV-PLIQALNKRG--FEIAVETNGTIEP 124
           GEPL++  +   IQ ++      +IA+ TNG + P
Sbjct: 67  GEPLVRNGIVEFIQMISNIDGIKDIAITTNGILLP 101


>gi|326404219|ref|YP_004284301.1| hypothetical protein ACMV_20720 [Acidiphilium multivorum AIU301]
 gi|325051081|dbj|BAJ81419.1| hypothetical protein ACMV_20720 [Acidiphilium multivorum AIU301]
          Length = 383

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 8/87 (9%)

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           R +V    + ++E             + GGEPLL  ++P +++ +  R   I + TN  +
Sbjct: 58  RLSVADALEAVDECG------APVVAIAGGEPLLHREMPEIVEKILARDKFIYLCTN-AL 110

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQEL 149
              + ID     P    D+ + G +E+
Sbjct: 111 LLEKKIDQYKPHPNFCWDIHLDGDREM 137


>gi|126460244|ref|YP_001056522.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126249965|gb|ABO09056.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548]
          Length = 579

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 8/91 (8%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           L      +R +  C  C   F             ++Q+  ++               ++G
Sbjct: 149 LAIIDVTNRCNMACPVC---FANAGAAGYVYEPTLEQIEYMLRTLRAQKPWPPNAIQISG 205

Query: 93  GEPLLQVDVPLI-QALNKRGFEIAVE--TNG 120
           GEP L+ D+P+I     K GF   +E  TNG
Sbjct: 206 GEPTLRDDLPIIVSMAKKLGFT-HIEVNTNG 235


>gi|77165222|ref|YP_343747.1| oxidoreductase [Nitrosococcus oceani ATCC 19707]
 gi|254434696|ref|ZP_05048204.1| radical SAM domain protein [Nitrosococcus oceani AFC27]
 gi|76883536|gb|ABA58217.1| Radical SAM domain Fe-S oxidoreductase [Nitrosococcus oceani ATCC
           19707]
 gi|207091029|gb|EDZ68300.1| radical SAM domain protein [Nitrosococcus oceani AFC27]
          Length = 372

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 22/119 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+   +     R +  +  D ++E             +
Sbjct: 38  CNL-----------ACAGCGKIDYS--EEILDRRLSPQECFDAVDECG------APIVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
            GGEPL+  ++P ++  + KR   + + TN  +   + +     SP     + + G +E
Sbjct: 79  PGGEPLIHKEMPQIVAGIVKRKKFVYLCTN-ALLLSKRLKDYTPSPYLTFSVHLDGNRE 136


>gi|20089980|ref|NP_616055.1| moaA/nifB/pqqE family protein [Methanosarcina acetivorans C2A]
 gi|19914943|gb|AAM04535.1| moaA/nifB/pqqE family protein [Methanosarcina acetivorans C2A]
          Length = 509

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
           +++  +IE               TGGEP ++ D+P LI+   + GF +I + +NG
Sbjct: 140 EEIRKMIELLRKEKPAPCSAIQFTGGEPTVRDDLPELIELAEELGFAQIQIASNG 194


>gi|188025792|ref|ZP_02959835.2| hypothetical protein PROSTU_01734 [Providencia stuartii ATCC 25827]
 gi|188020518|gb|EDU58558.1| hypothetical protein PROSTU_01734 [Providencia stuartii ATCC 25827]
          Length = 273

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 56/180 (31%), Gaps = 36/180 (20%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G    V++L           
Sbjct: 52  VF--FQGC-----------LMRCLYCHNRDT----WDTHTGKMVTVEELMKEAVTYRHFM 94

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG-TIEPPQGIDWICVSPKAG 138
              G     +GGE +LQ +      +A   +     ++TNG        ID +       
Sbjct: 95  NATGGGVTASGGEAILQAEFVRDWFRACKAQNIHTCLDTNGFVRRYDPVIDEL----MEV 150

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
            DL +   ++L     Q  V   N+   +F R+          + N    + Y    P W
Sbjct: 151 TDLVMLDLKQLNDDIHQTLVGVSNHRTLEFARY--------LAKRNQKTWVRYVVV-PGW 201


>gi|225155513|ref|ZP_03724004.1| (Formate-C-acetyltransferase)-activating enzyme [Opitutaceae
           bacterium TAV2]
 gi|224803814|gb|EEG22046.1| (Formate-C-acetyltransferase)-activating enzyme [Opitutaceae
           bacterium TAV2]
          Length = 305

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 41/142 (28%), Gaps = 48/142 (33%)

Query: 24  AVFCRFSGCNLWSGREQDRLS-----------AQCRFC-------DTD---------FVG 56
            VFC   GCN+      +  +           ++C  C       DT             
Sbjct: 28  TVFC--KGCNMRCAWCHNPETINPRPELQFFRSRCIGCGHCLAAPDTSGAGASADAALCF 85

Query: 57  IQGTKGGRY-----NVDQLA---------DLIEEQWITGEKEGRY---CVLTGGEPLLQV 99
              T   R+     + + L          D++ E                L+GGE  +Q 
Sbjct: 86  TDDTGVARHYRGDCHAEALVKVGREVAPQDVLAEALQDKNFYANSGGGVTLSGGEVTVQT 145

Query: 100 DVPL--IQALNKRGFEIAVETN 119
              L  +  L   G   A+ETN
Sbjct: 146 HFALETLALLKASGIHTAIETN 167


>gi|91200261|emb|CAJ73306.1| similar to moaA/nifB/ppqE/nirJ protein family for cofactor
           bionsynthesis [Candidatus Kuenenia stuttgartiensis]
          Length = 333

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 11/100 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCVLTG- 92
                DR +  C++C             R   +VDQ   +++              L G 
Sbjct: 32  CLYVTDRCTLSCKWC-LRQSTQDKFSNKRHDMSVDQARKILQ-----HFPNAARLSLAGF 85

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           GEPL+  D+  +     KR   +++ TNGT+   + ID I
Sbjct: 86  GEPLMVDDLFKITAEFKKRPMRVSIITNGTL-LLERIDDI 124


>gi|29375960|ref|NP_815114.1| molybdopterin cofactor biosynthesis protein A, putative
           [Enterococcus faecalis V583]
 gi|256965220|ref|ZP_05569391.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           HIP11704]
 gi|257419205|ref|ZP_05596199.1| predicted protein [Enterococcus faecalis T11]
 gi|29343422|gb|AAO81184.1| molybdopterin cofactor biosynthesis protein A, putative
           [Enterococcus faecalis V583]
 gi|256955716|gb|EEU72348.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           HIP11704]
 gi|257161033|gb|EEU90993.1| predicted protein [Enterococcus faecalis T11]
          Length = 324

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 14/97 (14%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            R S          DR   +C +C     G+   K  +   D   ++I    I  +++ +
Sbjct: 15  VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEDIK 63

Query: 87  YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
              LTGGEPL++ + + LI+ + +  G E + + TNG
Sbjct: 64  KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100


>gi|296133638|ref|YP_003640885.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermincola sp. JR]
 gi|296032216|gb|ADG82984.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermincola potens JR]
          Length = 170

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 25/90 (27%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            GC             +C  C   D     +    G   ++D++   I +  +       
Sbjct: 28  QGCP-----------RRCPGCHNPD----ALDPDGGQEVDIDEIVSTIVKNPLVKG---- 68

Query: 87  YCVLTGGEPLLQVD--VPLIQALNKRGFEI 114
               +GG+P LQ      L   L  RG  I
Sbjct: 69  -VTFSGGDPFLQAAGFAALAGKLKDRGLNI 97


>gi|126653928|ref|ZP_01725772.1| hypothetical protein BB14905_00445 [Bacillus sp. B14905]
 gi|126589588|gb|EAZ83728.1| hypothetical protein BB14905_00445 [Bacillus sp. B14905]
          Length = 370

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D +   ++E         +   +TGGEP++        
Sbjct: 42  RCAHCAVGYT-LQNKDPEALPIDLILRRLDEI-----PHLKTLSITGGEPMMSKKSVQNY 95

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
            +PL++  ++RG    + +N T+EP
Sbjct: 96  VLPLLKYAHERGVRTQINSNLTLEP 120


>gi|45358134|ref|NP_987691.1| molybdenum cofactor biosynthesis protein A [Methanococcus
           maripaludis S2]
 gi|74555264|sp|Q6LZQ3|MOAA_METMP RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|44920891|emb|CAF30127.1| MoaA/nifB/pqqE family [Methanococcus maripaludis S2]
          Length = 297

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 28/119 (23%)

Query: 28  RFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           R S    CNL           +C +C     G     G   + D++  ++       E  
Sbjct: 13  RLSITPKCNL-----------KCFYC--HKEGRNEEHGKLMSADEIGKIVNSSL---EFG 56

Query: 85  GRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNGTI-------EPPQGIDWICVS 134
            R   ++GGEPLL+ D+P +I  +     + I++ TNG +           G+D + VS
Sbjct: 57  VRKIKISGGEPLLRTDLPEIISYIKNEQIKDISLTTNGILLEKYAQKLKDAGLDRVNVS 115


>gi|24212660|sp|O57854|MOAA_PYRHO RecName: Full=Probable molybdenum cofactor biosynthesis protein A
          Length = 310

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCV 89
           CNL            C +C       +G   G      +++  ++    +      +   
Sbjct: 21  CNL-----------SCFYC-----HREGQLDGERFMTPEEIERIV---RVASRLGIKKVK 61

Query: 90  LTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
           LTGGEP ++ D + +I+ L     ++++ TNGT
Sbjct: 62  LTGGEPTIRKDILEIIRRLKPYVVDLSLTTNGT 94


>gi|148260825|ref|YP_001234952.1| radical SAM domain-containing protein [Acidiphilium cryptum JF-5]
 gi|146402506|gb|ABQ31033.1| Radical SAM domain protein [Acidiphilium cryptum JF-5]
          Length = 383

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 8/87 (9%)

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           R +V    + ++E             + GGEPLL  ++P +++ +  R   I + TN  +
Sbjct: 58  RLSVADALEAVDECG------APVVAIAGGEPLLHREMPEIVEKILARDKFIYLCTN-AL 110

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQEL 149
              + ID     P    D+ + G +E+
Sbjct: 111 LLEKKIDQYKPHPNFCWDIHLDGDREM 137


>gi|307635039|gb|ADI85246.2| magnesium-dependent deoxyribonuclease, TatD family, and radical SAM
           domain iron-sulfur oxidoreductase [Geobacter
           sulfurreducens KN400]
          Length = 462

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 14/112 (12%)

Query: 15  GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLA 71
           GE   A R+A   R    N       +R S +C FC   D D+          +  D  A
Sbjct: 261 GESDQAARIAYRIR----NSLYLNITNRCSNRCSFCAKFD-DYTVKGHHLRLDHEPDS-A 314

Query: 72  DLIEEQWITGEKEGRYCVLTG-GEPLLQVDV--PLIQALNKRGFEIAVETNG 120
           +++      G  +    V  G GEP+L++D+   + + L KRGF I + T+G
Sbjct: 315 EVLAAVGEPGPVDE--IVFCGFGEPMLRLDLIVEVARELKKRGFRIRINTDG 364


>gi|39997584|ref|NP_953535.1| TatD family deoxyribonuclease [Geobacter sulfurreducens PCA]
 gi|39984476|gb|AAR35862.1| deoxyribonuclease, TatD family [Geobacter sulfurreducens PCA]
          Length = 462

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 14/112 (12%)

Query: 15  GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLA 71
           GE   A R+A   R    N       +R S +C FC   D D+          +  D  A
Sbjct: 261 GESDQAARIAYRIR----NSLYLNITNRCSNRCSFCAKFD-DYTVKGHHLRLDHEPDS-A 314

Query: 72  DLIEEQWITGEKEGRYCVLTG-GEPLLQVDV--PLIQALNKRGFEIAVETNG 120
           +++      G  +    V  G GEP+L++D+   + + L KRGF I + T+G
Sbjct: 315 EVLAAVGEPGPVDE--IVFCGFGEPMLRLDLIVEVARELKKRGFRIRINTDG 364


>gi|295107810|emb|CBL21763.1| GTP cyclohydrolase subunit MoaA [Ruminococcus obeum A2-162]
          Length = 316

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C     GI+ T  GR N+ Q  ++I    +  E   +   +TGGEPL++  
Sbjct: 18  DRCNLRCIYC-MPEEGIRLT--GRENILQEPEIIRVCQVMAELGIKKIKITGGEPLVRPR 74

Query: 101 VP-LIQALNK-RGFE-IAVETNG 120
           +P LI  +    G E + + TNG
Sbjct: 75  IPGLIHQIKAIPGIEKVTLTTNG 97


>gi|159033044|gb|ABW87805.1| SpeY [Streptomyces spectabilis]
          Length = 302

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF--EIAVETN 119
              +  ++ D +    +       Y  + GGEPLL  DV  LI+A+   G    + V TN
Sbjct: 41  ENADPAEIHDTLS--VLARSYHASYAKIMGGEPLLHPDVVGLIEAVRATGISDTVLVATN 98

Query: 120 GTI 122
           GT+
Sbjct: 99  GTL 101


>gi|194336426|ref|YP_002018220.1| molybdenum cofactor biosynthesis protein A [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308903|gb|ACF43603.1| molybdenum cofactor biosynthesis protein A [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 326

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 29/115 (25%)

Query: 27  CR---FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD---LIEEQWIT 80
            R    S CNL           +C +C      ++    GR +   L D   +     + 
Sbjct: 15  VRIAVTSRCNL-----------RCSYC------MREEHEGRADTVSLLDKNEINTIIAVL 57

Query: 81  GEKEGRYCVLTGGEPLLQVDVP-LIQALNKRG--FEIAVETNGTI---EPPQGID 129
            E        TGGEPLL+  +  L++   +      + + TNG +     P  ID
Sbjct: 58  AELGFSKVRFTGGEPLLREGIAGLVREAKQHPSIKTVGLTTNGVLLDRFLPSLID 112


>gi|322834860|ref|YP_004214887.1| glycyl-radical enzyme activating protein family [Rahnella sp.
           Y9602]
 gi|321170061|gb|ADW75760.1| glycyl-radical enzyme activating protein family [Rahnella sp.
           Y9602]
          Length = 295

 Score = 39.2 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 38/116 (32%), Gaps = 22/116 (18%)

Query: 25  VFCRFSGCNLWSGREQDRLS-----------AQCRFCDTDF-------VGIQGTKGGRYN 66
           VF  F GC        +  S           A+C  C T          G     G    
Sbjct: 45  VF--FKGCPHRCPWCANPESMSPRIQVIKRQAKCLNCRTCLQDPNECPSGAMEYVGEDIT 102

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
           +  L   + +  I     G    L+GGE L+Q      L++ L   G   A+ET G
Sbjct: 103 LPDLMTRLLKDEIFFRSSGGGVTLSGGEVLMQYTFAGELLRELQALGIPTAIETAG 158


>gi|256830158|ref|YP_003158886.1| Radical SAM domain protein [Desulfomicrobium baculatum DSM 4028]
 gi|256579334|gb|ACU90470.1| Radical SAM domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 397

 Score = 39.2 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 16/95 (16%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              CNL            C                  + DQ   +I++     +      
Sbjct: 47  TQRCNLKC--------VHCY----AHAVEPSNHKDPISTDQAKAMIDDL---AKFGAPVI 91

Query: 89  VLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122
           + +GGEPL+ +  V L +     G    + TNGT+
Sbjct: 92  LFSGGEPLVREDLVDLAKYATSTGMRAVISTNGTL 126


>gi|154492926|ref|ZP_02032552.1| hypothetical protein PARMER_02568 [Parabacteroides merdae ATCC
           43184]
 gi|154087231|gb|EDN86276.1| hypothetical protein PARMER_02568 [Parabacteroides merdae ATCC
           43184]
          Length = 301

 Score = 39.2 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111
           G  Y+ + L   IE++ +  ++        GGEPLL    PL+  L + G
Sbjct: 100 GTEYSAEALMKEIEKEIVFMDRSEGGVTFCGGEPLLHPG-PLLDLLRRCG 148


>gi|15803040|ref|NP_289070.1| hypothetical protein Z3780 [Escherichia coli O157:H7 EDL933]
 gi|12516911|gb|AAG57627.1|AE005481_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 384

 Score = 39.2 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N            R  L+            + I Y  
Sbjct: 236 APN-DEIRDEIVPINKXXNXETFLAAVRRYLE----KSNANQGRVTIEYVM 281


>gi|297200519|ref|ZP_06917916.1| radical SAM domain-containing protein [Streptomyces sviceus ATCC
           29083]
 gi|297147672|gb|EFH28704.1| radical SAM domain-containing protein [Streptomyces sviceus ATCC
           29083]
          Length = 401

 Score = 39.2 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 32/97 (32%), Gaps = 14/97 (14%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         S    + D       G       V + A LI E            VL 
Sbjct: 15  CNLACDYCYVYESVDQSWRDRPRTMAPGV------VRRAAALIAEHAREHALSEVQVVLH 68

Query: 92  GGEPLL-------QVDVPLIQALNK-RGFEIAVETNG 120
           GGEPLL        V   L  AL+      + ++TNG
Sbjct: 69  GGEPLLVGAERLDAVLRELAGALDGVAELRLNLQTNG 105


>gi|241765406|ref|ZP_04763377.1| Radical SAM domain protein [Acidovorax delafieldii 2AN]
 gi|241364850|gb|EER59814.1| Radical SAM domain protein [Acidovorax delafieldii 2AN]
          Length = 419

 Score = 39.2 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 16/112 (14%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            +       R +  C+ C   +         G  +  ++  ++++            +L+
Sbjct: 36  PVVIWNLIRRCNLTCKHC---YALSADHDYEGELSTQEVFGVMDDLKA---YRVPVLILS 89

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI--------EPPQGIDWICVS 134
           GGEPL++ D+  +        F   + TNGT+            G D++ +S
Sbjct: 90  GGEPLMRPDLFDIAARAKDMRFYTGLSTNGTLIDEPMADRVAAAGFDYVGIS 141


>gi|218261737|ref|ZP_03476472.1| hypothetical protein PRABACTJOHN_02143 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223813|gb|EEC96463.1| hypothetical protein PRABACTJOHN_02143 [Parabacteroides johnsonii
           DSM 18315]
          Length = 301

 Score = 39.2 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111
           G  Y+ + L   IE++ +  ++        GGEPLL  + PL+  L + G
Sbjct: 100 GTEYSAEALMKEIEKETVFMDRSEGGVTFCGGEPLLHPE-PLLDLLRRCG 148


>gi|146282425|ref|YP_001172578.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           stutzeri A1501]
 gi|145570630|gb|ABP79736.1| coenzyme PQQ synthesis protein E [Pseudomonas stutzeri A1501]
          Length = 381

 Score = 39.2 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 8/98 (8%)

Query: 27  CRF--SGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            R   SG  +W   E   +   QC FC ++       +    +  +  D++ +    G  
Sbjct: 8   LRLDGSGNPVWLLLELTYQCPLQCVFC-SNPRNFADYRPDELSTAEWIDVMAQARAMGAV 66

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           +      +GGEP L+ D+  L+   ++ G+   + T+G
Sbjct: 67  Q---IGFSGGEPTLRKDLETLVAEADRMGYYTNLITSG 101


>gi|148554439|ref|YP_001262021.1| GTP cyclohydrolase subunit MoaA [Sphingomonas wittichii RW1]
 gi|148499629|gb|ABQ67883.1| GTP cyclohydrolase subunit MoaA [Sphingomonas wittichii RW1]
          Length = 346

 Score = 39.2 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 11/93 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +CR+C          K     +++LA L +     G ++ R   LTGGEPL++  
Sbjct: 32  DRCDFRCRYC-MAEKMQFLPKREILTIEELAALADAFIARGIRKIR---LTGGEPLVRRG 87

Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGIDWICV 133
           +  +  L   G  I     G  +   G+D + +
Sbjct: 88  IDELVRLI--GRRI-----GAKDDGGGLDELTL 113


>gi|73538724|ref|YP_299091.1| radical SAM family protein [Ralstonia eutropha JMP134]
 gi|72122061|gb|AAZ64247.1| Radical SAM [Ralstonia eutropha JMP134]
          Length = 386

 Score = 39.2 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 22/120 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +V++    ++E             +
Sbjct: 38  CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLGAVDECG------APVVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
            GGEPLL  D+P +++ +  R   + + TN  +   + +D    SP     + + G +E+
Sbjct: 79  AGGEPLLHKDMPEIVRGIIARRKFVYLCTN-ALLMEKKLDQYEPSPYFVWSVHLDGDREM 137


>gi|52787593|ref|YP_093422.1| molybdenum cofactor biosynthesis protein A [Bacillus licheniformis
           ATCC 14580]
 gi|163119684|ref|YP_080993.2| molybdenum cofactor biosynthesis protein A [Bacillus licheniformis
           ATCC 14580]
 gi|319648075|ref|ZP_08002292.1| molybdenum cofactor biosynthesis protein A [Bacillus sp. BT1B_CT2]
 gi|81608871|sp|Q65DY5|MOAA_BACLD RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|52350095|gb|AAU42729.1| MoaA [Bacillus licheniformis ATCC 14580]
 gi|145903194|gb|AAU25355.2| MoaA [Bacillus licheniformis ATCC 14580]
 gi|317389710|gb|EFV70520.1| molybdenum cofactor biosynthesis protein A [Bacillus sp. BT1B_CT2]
          Length = 341

 Score = 39.2 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 24/112 (21%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  F+     KG   + ++L  L +      +       LTG
Sbjct: 25  DRCNLRCTYCMPAEIFGQDYPFL----PKGELLSFEELERLAK--LFVHQFGVEKIRLTG 78

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEP-------PQGIDWICVS 134
           GEPL++ D+P L+  L   +G   IA+ TNG + P         G+  + VS
Sbjct: 79  GEPLMRKDMPELVGKLAGIKGIRDIAMTTNGVLLPVYADKLKKAGLKRVTVS 130


>gi|212712166|ref|ZP_03320294.1| hypothetical protein PROVALCAL_03248 [Providencia alcalifaciens DSM
           30120]
 gi|212685213|gb|EEB44741.1| hypothetical protein PROVALCAL_03248 [Providencia alcalifaciens DSM
           30120]
          Length = 326

 Score = 39.2 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 7/83 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D  + +C +C    +       GR+    L ++        E       +TGGEP ++ D
Sbjct: 21  DVCNFRCTYC----LPDGYKPSGRHEFLTLDEIRRVSRAFAELGTEKVRITGGEPTMRKD 76

Query: 101 -VPLIQALNKRG--FEIAVETNG 120
              +I A+ +     +IAV TNG
Sbjct: 77  FTDIIAAIKENDSIKKIAVTTNG 99


>gi|260885334|ref|ZP_05734801.2| pyruvate formate-lyase 1-activating enzyme [Prevotella tannerae
           ATCC 51259]
 gi|260852856|gb|EEX72725.1| pyruvate formate-lyase 1-activating enzyme [Prevotella tannerae
           ATCC 51259]
          Length = 260

 Score = 39.2 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 30/126 (23%)

Query: 2   KLYSIK--EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFV 55
            +  +   E F ++ G G        +F    GC           + +C++C   DT   
Sbjct: 21  SMLQVHSIESFGSVDGPGIRFV----IF--LKGC-----------AMRCQYCHNPDT--- 60

Query: 56  GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFE 113
                 G   +VD++    +       ++G    ++GGE LLQ      L +     G  
Sbjct: 61  -WSRAGGQLRSVDEVLAQAQRFQSYWGEQGG-ITVSGGEALLQMPALTELFRKAKDLGIN 118

Query: 114 IAVETN 119
             ++T+
Sbjct: 119 TCLDTS 124


>gi|288930733|ref|YP_003434793.1| radical SAM protein [Ferroglobus placidus DSM 10642]
 gi|288892981|gb|ADC64518.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642]
          Length = 335

 Score = 39.2 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 12/97 (12%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R + +C +C          +    +  ++  +IE      +        TGGEPLL+ DV
Sbjct: 33  RCNMRCHYC-----AYWMWRCDEMSTVEVKRMIE---GAADVGMAVYTATGGEPLLRRDV 84

Query: 102 -PLIQALNKRGFEIAVETNGTIEPP---QGIDWICVS 134
             +++     G    + TNG +        +D + VS
Sbjct: 85  NEILRKAKDCGLYTMLVTNGLLLEKFSNLNVDLLVVS 121


>gi|226941178|ref|YP_002796252.1| NrdG [Laribacter hongkongensis HLHK9]
 gi|226716105|gb|ACO75243.1| NrdG [Laribacter hongkongensis HLHK9]
          Length = 159

 Score = 39.2 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 15/89 (16%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           R  +F   SGC             +C  C          + GR   D+LAD I       
Sbjct: 18  RATLFV--SGC-----------EHRCPGC--YNASTWPVESGRPFDDELADRIIADLNDT 62

Query: 82  EKEGRYCVLTGGEPLLQVDVPLIQALNKR 110
               R   L+GG+PL   ++  ++ L +R
Sbjct: 63  RIRRRGLSLSGGDPLHPANLATVRKLLER 91


>gi|254173371|ref|ZP_04880044.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermococcus sp. AM4]
 gi|214032780|gb|EEB73609.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermococcus sp. AM4]
          Length = 246

 Score = 39.2 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 22/101 (21%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD--QLADLIEEQWITGEKEGR 86
             GCNL           +C FC              ++++   L D +E      +    
Sbjct: 24  LCGCNL-----------RCPFC---HNWRIAEGLDCFSLNRKALLDELEASAFLIDYFH- 68

Query: 87  YCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPP 125
              +TGGEPL+Q      L   +      +++ TN T+  P
Sbjct: 69  ---VTGGEPLMQWRELSSLFAEVKLLDVPVSLNTNLTLVRP 106


>gi|86604900|ref|YP_473663.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp.
           JA-3-3Ab]
 gi|86553442|gb|ABC98400.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp.
           JA-3-3Ab]
          Length = 312

 Score = 39.2 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 17/91 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR+C          K       Q  ++I E    G +E R   +T
Sbjct: 22  CNL-----------RCRYC-MPLHPEFLDKSSYLTPQQYKEIIGELLDYGIEEVR---IT 66

Query: 92  GGEPLL-QVDVPLIQALNKRGFE-IAVETNG 120
           GGEPL+ Q    +IQ L K     +++ TNG
Sbjct: 67  GGEPLVRQDFDEVIQELAKLKIPSLSLTTNG 97


>gi|18313168|ref|NP_559835.1| pyruvate formate-lyase activating enzyme-like protein [Pyrobaculum
           aerophilum str. IM2]
 gi|18160681|gb|AAL64017.1| pyruvate formate-lyase activating enzyme homolog [Pyrobaculum
           aerophilum str. IM2]
          Length = 373

 Score = 39.2 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 18/93 (19%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            VF  FSGCN            +C +C    +      G     + LA +  +    G +
Sbjct: 153 TVF--FSGCNF-----------RCVYCQNWDISQFSESGIEVTAEALAAIQAKLREEGAR 199

Query: 84  EGRYCVLTGGEPL--LQVDVPLIQALNKRGFEI 114
              +    GGEP   +   +  ++ L +RG  +
Sbjct: 200 NINWV---GGEPTPNIPYILESLRILARRGVNV 229


>gi|107027643|ref|YP_625154.1| radical SAM family protein [Burkholderia cenocepacia AU 1054]
 gi|116693646|ref|YP_839179.1| radical SAM domain-containing protein [Burkholderia cenocepacia
           HI2424]
 gi|105897017|gb|ABF80181.1| Radical SAM [Burkholderia cenocepacia AU 1054]
 gi|116651646|gb|ABK12286.1| Radical SAM domain protein [Burkholderia cenocepacia HI2424]
          Length = 386

 Score = 39.2 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 22/119 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +V++    ++E             +
Sbjct: 38  CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
            GGEPLL  D+P +++ + KR   + + TN  +   + +D    SP     + + G +E
Sbjct: 79  AGGEPLLHKDMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYQPSPYFVWSVHLDGDKE 136


>gi|299537543|ref|ZP_07050837.1| hypothetical protein BFZC1_16040 [Lysinibacillus fusiformis ZC1]
 gi|298727104|gb|EFI67685.1| hypothetical protein BFZC1_16040 [Lysinibacillus fusiformis ZC1]
          Length = 370

 Score = 39.2 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        ++ +   ++E         +   +TGGEP++        
Sbjct: 42  RCAHCAVGYT-LQNKDPEALPIELILKRLDEI-----PHLKTLSITGGEPMMSKKSVQNY 95

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
            +PL++  ++RG    + +N T+EP
Sbjct: 96  VLPLLKYAHERGVRTQINSNLTLEP 120


>gi|257455930|ref|ZP_05621147.1| molybdenum cofactor biosynthesis protein A [Enhydrobacter
           aerosaccus SK60]
 gi|257446676|gb|EEV21702.1| molybdenum cofactor biosynthesis protein A [Enhydrobacter
           aerosaccus SK60]
          Length = 334

 Score = 39.2 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 8/85 (9%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D              +V ++  LI+     G  + R   LTGGEP ++
Sbjct: 27  DFCNFRCHYCLPDGYTANAGKRPDNELSVSEIDVLIQAFAKLGTTKVR---LTGGEPSIR 83

Query: 99  VDVPLIQALNK--RGFE-IAVETNG 120
            D+P I  L K  +G + +AV +NG
Sbjct: 84  QDLPRIIELAKQTQGIQTVAVSSNG 108


>gi|225572319|ref|ZP_03781183.1| hypothetical protein RUMHYD_00613 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040201|gb|EEG50447.1| hypothetical protein RUMHYD_00613 [Blautia hydrogenotrophica DSM
           10507]
          Length = 297

 Score = 39.2 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 18/81 (22%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNK-RGFE-IAVETNG 120
           + +++LA++     I      R   LTGGEPL  LQ++  L++ L K  G E + + TNG
Sbjct: 18  HEIERLAEIFVSVGI------RKIKLTGGEPLVRLQIE-ELVKDLKKIEGIEQVTLTTNG 70

Query: 121 T-------IEPPQGIDWICVS 134
           T       +    GID + +S
Sbjct: 71  TLLKEKAALLAEAGIDGVNLS 91


>gi|220912213|ref|YP_002487522.1| molybdenum cofactor biosynthesis protein A [Arthrobacter
           chlorophenolicus A6]
 gi|219859091|gb|ACL39433.1| molybdenum cofactor biosynthesis protein A [Arthrobacter
           chlorophenolicus A6]
          Length = 380

 Score = 39.2 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 21/106 (19%)

Query: 21  GRVAVFCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEE 76
           GR A   R S    CNL           +C +C     G++   K      +++  ++  
Sbjct: 38  GRRATDMRLSLTDKCNL-----------RCTYC-MPAEGLEWLAKQAVMTAEEIVRIVR- 84

Query: 77  QWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKR--GFEIAVETN 119
                +   R   LTGGEPL+    V +I AL        I++ TN
Sbjct: 85  -IGVEQLGVRELRLTGGEPLVRHDLVDIISALRSNHPDLPISMTTN 129


>gi|171185898|ref|YP_001794817.1| radical SAM domain-containing protein [Thermoproteus neutrophilus
           V24Sta]
 gi|170935110|gb|ACB40371.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 573

 Score = 39.2 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 8/91 (8%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           L      +R +  C  C   F             ++Q+  ++               L+G
Sbjct: 147 LAIVDVTNRCNMACPVC---FANAGAAGYVYEPTIEQIEYMLRTLRAQKPWAPNAVQLSG 203

Query: 93  GEPLLQVDVP-LIQALNKRGFEIAVE--TNG 120
           GEP L+ D+P +I+   K GF   +E  TNG
Sbjct: 204 GEPTLRDDLPEIIRMAKKLGFT-HIEVNTNG 233


>gi|160879194|ref|YP_001558162.1| radical SAM domain-containing protein [Clostridium phytofermentans
           ISDg]
 gi|160427860|gb|ABX41423.1| Radical SAM domain protein [Clostridium phytofermentans ISDg]
          Length = 297

 Score = 39.2 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 22/105 (20%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           QC FC  T              V +   +IEE          + + 
Sbjct: 23  CNL-----------QCDFCPKTKRA------PKFLTVPEFEHVIEEVSPYTNYIYLHIM- 64

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134
             GEPLL  ++   I+   K+  ++ + TNGT+  P+    + +S
Sbjct: 65  --GEPLLHENLKDFIEIAGKKNIKVNLTTNGTLLSPEKEYLLNLS 107


>gi|257085347|ref|ZP_05579708.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           Fly1]
 gi|256993377|gb|EEU80679.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           Fly1]
          Length = 324

 Score = 38.9 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            R S          DR   +C +C     G+   K  +   D   ++I    I  ++  +
Sbjct: 15  VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 63

Query: 87  YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
              LTGGEPL++ + + LI+ + +  G E + + TNG
Sbjct: 64  KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100


>gi|268317762|ref|YP_003291481.1| molybdenum cofactor biosynthesis protein A [Rhodothermus marinus
           DSM 4252]
 gi|262335296|gb|ACY49093.1| molybdenum cofactor biosynthesis protein A [Rhodothermus marinus
           DSM 4252]
          Length = 363

 Score = 38.9 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 18/101 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR+C     G+  T       D+  ++I    +   +      LT
Sbjct: 59  CNL-----------RCRYC-MPEEGLDWTPPEHLLTDE--EIIRLARLFVSQGVTKIRLT 104

Query: 92  GGEPLLQVDVPLIQALNKR--GFE-IAVETNGTIEPPQGID 129
           GGEPLL+  +  I A   R  G   +A+ TNG +  P+ +D
Sbjct: 105 GGEPLLRKGIERIVAELARLPGLRALAMTTNG-LLLPKKLD 144


>gi|126700902|ref|YP_001089799.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium
           difficile 630]
 gi|255102450|ref|ZP_05331427.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium
           difficile QCD-63q42]
 gi|255308355|ref|ZP_05352526.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium
           difficile ATCC 43255]
 gi|115252339|emb|CAJ70180.1| Pyruvate formate-lyase (activating enzyme) [Clostridium difficile]
          Length = 302

 Score = 38.9 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 32  CN----LWSGREQDRLSAQCRFCDT--DFVGIQGTK--GGRYNVDQLADLIEEQWITGEK 83
           C          +      +C FC+T  D+      +  G  Y+V  L   IE+  I  E+
Sbjct: 64  CPHKAIYKGETKICLDQDKCEFCETCLDYCVNNAREIVGQEYSVRDLVKEIEKDRIFYEE 123

Query: 84  EGRYCVLTGGEPLLQVDV---PLIQALNKRGFEIAVETNG 120
            G    L+GGE + Q       +I     +G  +A++T G
Sbjct: 124 SGGGVTLSGGEVMAQDMDFICGVINMCKSKGIHVAIDTCG 163


>gi|323135945|ref|ZP_08071028.1| molybdenum cofactor biosynthesis protein A [Methylocystis sp. ATCC
           49242]
 gi|322399036|gb|EFY01555.1| molybdenum cofactor biosynthesis protein A [Methylocystis sp. ATCC
           49242]
          Length = 346

 Score = 38.9 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 10/87 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QV 99
           DR   +C +C ++ +     +     +++L  L       G K  R   +TGGEPL+   
Sbjct: 34  DRCDFRCVYCMSEHMTFL-PRRDLLTLEELDRLCSAFVARGTKRLR---ITGGEPLVRHD 89

Query: 100 DVPLIQALNKRGFEIAVE-----TNGT 121
            + L +AL++     A+E     TNG+
Sbjct: 90  VMTLFRALSRHLASGALEELTLTTNGS 116


>gi|300860220|ref|ZP_07106307.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           TUSoD Ef11]
 gi|295112913|emb|CBL31550.1| molybdenum cofactor biosynthesis protein A, bacterial [Enterococcus
           sp. 7L76]
 gi|300849259|gb|EFK77009.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           TUSoD Ef11]
          Length = 321

 Score = 38.9 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 14/97 (14%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            R S          DR   +C +C     G+   K  +   D   ++I    I  +++ +
Sbjct: 12  VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEDIK 60

Query: 87  YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
              LTGGEPL++ + + LI+ + +  G E + + TNG
Sbjct: 61  KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 97


>gi|167464385|ref|ZP_02329474.1| hypothetical protein Plarl_17836 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 374

 Score = 38.9 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 23/99 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN+            C   DT    +  ++G ++ +D +   ++E      +      +T
Sbjct: 44  CNMRC--------EHCAVGDT----LTASEGSKFPLDLIFKRLDEV-----EHLETISIT 86

Query: 92  GGEPLLQVD------VPLIQALNKRGFEIAVETNGTIEP 124
           GGEP   +       +PL++   +RG    + +N T++ 
Sbjct: 87  GGEPTFHLKTVKDIIIPLLKYAKERGVRSQLNSNLTLDL 125


>gi|118442945|ref|YP_877161.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium novyi NT]
 gi|118133401|gb|ABK60445.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium novyi NT]
          Length = 164

 Score = 38.9 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 20/95 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           R A+F   SGCN      Q++      +            G    V+ + + I+      
Sbjct: 20  RSALF--LSGCNHNCDECQNKEMQNANY------------GDDIEVEDILNRIKSNMPL- 64

Query: 82  EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
               +    +GGEP  Q      L   L +   +I
Sbjct: 65  ---IKGVTFSGGEPFEQCRELTVLANKLKEENLDI 96


>gi|157363749|ref|YP_001470516.1| molybdenum cofactor biosynthesis protein A [Thermotoga lettingae
           TMO]
 gi|157314353|gb|ABV33452.1| molybdenum cofactor biosynthesis protein A [Thermotoga lettingae
           TMO]
          Length = 309

 Score = 38.9 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C  + + ++         D++  + +  +  G K  R   +TGGEPLL+ D
Sbjct: 18  DRCNHRCFYCTCNNLFLKEEN--LMTYDEVNLISQFFYELGIKCIR---ITGGEPLLRND 72

Query: 101 VP-LIQALNKRGFEIAVETNGT 121
           V  +++AL+ R F +++ TNG+
Sbjct: 73  VVRIVKALSSR-FTVSMTTNGS 93


>gi|73661954|ref|YP_300735.1| molybdenum cofactor biosynthesis protein A [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|82592974|sp|Q49ZI6|MOAA_STAS1 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|72494469|dbj|BAE17790.1| molybdenum cofactor biosynthesis protein A [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 340

 Score = 38.9 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D DFV +   K      D++  + +     G K+ R   +TGG
Sbjct: 22  DRCNFRCDYCMPKEIFGD-DFVFL--PKDELLTFDEMVRIAQVYTQLGVKKIR---ITGG 75

Query: 94  EPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           EPLL+ D+  LI  LN+  G E I + TNG
Sbjct: 76  EPLLRRDLDKLIYQLNQLEGVEDIGLTTNG 105


>gi|329731179|gb|EGG67549.1| molybdenum cofactor biosynthesis protein A [Staphylococcus
           epidermidis VCU144]
 gi|329735413|gb|EGG71704.1| molybdenum cofactor biosynthesis protein A [Staphylococcus
           epidermidis VCU028]
          Length = 340

 Score = 38.9 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 24/94 (25%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D D+  +   K      ++L  + +     G K+ R   +TGG
Sbjct: 22  DRCNFRCDYCMPKEIFGD-DYTFL--PKNELLTFEELTRISKIYAQLGVKKIR---ITGG 75

Query: 94  EPLLQVD-------VPLIQALNKRGFEIAVETNG 120
           EPLL+ +       + LI  +   G      TNG
Sbjct: 76  EPLLRRNLYKLVEQLNLIDGIEDIGLT----TNG 105


>gi|330809991|ref|YP_004354453.1| putative radical-activating enzyme [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378099|gb|AEA69449.1| putative radical-activating enzyme [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 228

 Score = 38.9 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 11/110 (10%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L         + +CR+C    + I        +  ++   ++ +    +      V +GG
Sbjct: 19  LACVLFCQGCAWRCRYCHNPQL-IPPRGSEEVDWCRVLAFLQRRQDLLDA----VVFSGG 73

Query: 94  EPLLQV-DVPLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKA 137
           EP LQ    P ++ + + GF I + + G             DW+    KA
Sbjct: 74  EPTLQDGLAPAMEQVRQMGFRIGLHSAGIKPAAFAKVVGLADWVGFDVKA 123


>gi|27468759|ref|NP_765396.1| molybdenum cofactor biosynthesis protein A [Staphylococcus
           epidermidis ATCC 12228]
 gi|57867756|ref|YP_189412.1| molybdenum cofactor biosynthesis protein A [Staphylococcus
           epidermidis RP62A]
 gi|251812031|ref|ZP_04826504.1| molybdenum (Mo2+) cofactor biosynthesis protein A [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282875324|ref|ZP_06284197.1| molybdenum cofactor biosynthesis protein A [Staphylococcus
           epidermidis SK135]
 gi|293368414|ref|ZP_06615039.1| molybdenum cofactor biosynthesis protein A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|38258081|sp|Q8CNE6|MOAA_STAES RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|81673523|sp|Q5HLY1|MOAA_STAEQ RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|27316307|gb|AAO05482.1|AE016750_87 molybdenum cofactor biosynthesis protein A [Staphylococcus
           epidermidis ATCC 12228]
 gi|57638414|gb|AAW55202.1| molybdenum cofactor biosynthesis protein A [Staphylococcus
           epidermidis RP62A]
 gi|251804479|gb|EES57136.1| molybdenum (Mo2+) cofactor biosynthesis protein A [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281296089|gb|EFA88610.1| molybdenum cofactor biosynthesis protein A [Staphylococcus
           epidermidis SK135]
 gi|291317489|gb|EFE57910.1| molybdenum cofactor biosynthesis protein A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329737046|gb|EGG73301.1| molybdenum cofactor biosynthesis protein A [Staphylococcus
           epidermidis VCU045]
          Length = 340

 Score = 38.9 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 24/94 (25%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D D+  +   K      ++L  + +     G K+ R   +TGG
Sbjct: 22  DRCNFRCDYCMPKEIFGD-DYTFL--PKNELLTFEELTRISKIYAQLGVKKIR---ITGG 75

Query: 94  EPLLQVD-------VPLIQALNKRGFEIAVETNG 120
           EPLL+ +       + LI  +   G      TNG
Sbjct: 76  EPLLRRNLYKLVEQLNLIDGIEDIGLT----TNG 105


>gi|14590060|ref|NP_142124.1| molybdenum cofactor biosynthesis protein A [Pyrococcus horikoshii
           OT3]
 gi|3256500|dbj|BAA29183.1| 316aa long hypothetical molybdenum cofactor biosynthesis protein
           [Pyrococcus horikoshii OT3]
          Length = 316

 Score = 38.9 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCV 89
           CNL            C +C       +G   G      +++  ++    +      +   
Sbjct: 27  CNL-----------SCFYC-----HREGQLDGERFMTPEEIERIV---RVASRLGIKKVK 67

Query: 90  LTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
           LTGGEP ++ D + +I+ L     ++++ TNGT
Sbjct: 68  LTGGEPTIRKDILEIIRRLKPYVVDLSLTTNGT 100


>gi|257082638|ref|ZP_05576999.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           E1Sol]
 gi|256990668|gb|EEU77970.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           E1Sol]
          Length = 324

 Score = 38.9 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            R S          DR   +C +C     G+   K  +   D   ++I    I  ++  +
Sbjct: 15  VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 63

Query: 87  YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
              LTGGEPL++ + + LI+ + +  G E + + TNG
Sbjct: 64  KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100


>gi|281411546|ref|YP_003345625.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
 gi|281372649|gb|ADA66211.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
          Length = 482

 Score = 38.9 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 21/92 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C   + G+ G K    + D++ D++++    G        +T
Sbjct: 120 CNL-----------NCVGC---YAGLYGRKYE-LSHDEVRDILKQANDLGIYFF---TIT 161

Query: 92  GGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
           GGEP      + + +      F +   +NGT+
Sbjct: 162 GGEPFFWPHLMDIFEEFKDSYFLVY--SNGTL 191


>gi|119356568|ref|YP_911212.1| GTP cyclohydrolase subunit MoaA [Chlorobium phaeobacteroides DSM
           266]
 gi|119353917|gb|ABL64788.1| GTP cyclohydrolase subunit MoaA [Chlorobium phaeobacteroides DSM
           266]
          Length = 333

 Score = 38.9 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 24/113 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C  +            +  ++  +I      G K+ R+   T
Sbjct: 30  CNL-----------RCTYCMREEHEYHTIADPELSSREVGKIIVALASIGIKKIRF---T 75

Query: 92  GGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS 134
           GGEPLL+ D+  L++      G + +++ TNG +           G+D I +S
Sbjct: 76  GGEPLLRKDISVLVRQAKSIAGIKTVSLTTNGILLDRHLDELIDAGLDAINLS 128


>gi|300709764|ref|YP_003735578.1| Wyosine base formation domain protein [Halalkalicoccus jeotgali B3]
 gi|299123447|gb|ADJ13786.1| Wyosine base formation domain protein [Halalkalicoccus jeotgali B3]
          Length = 322

 Score = 38.9 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 72  DLIEEQWITGEKEGRYCVLT-GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
           D +  +   G  E R+  ++  GEP L   +P LI A + R     + +NGT  
Sbjct: 106 DEVPREVFEGAMEPRHVAISLDGEPTLYPYLPELIDAFHDRDITTFLVSNGTDP 159


>gi|297155993|gb|ADI05705.1| hypothetical protein SBI_02584 [Streptomyces bingchenggensis BCW-1]
          Length = 322

 Score = 38.9 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 20  CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 61

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  +++ L +R   + + TN  +   + I     SP     + I G +E
Sbjct: 62  GGEPLMHPQIDEIVRQLVERRKYVFLCTN-ALLLRKKIHKFKPSPYFAFAVHIDGLRE 118


>gi|254976882|ref|ZP_05273354.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium
           difficile QCD-66c26]
 gi|255094269|ref|ZP_05323747.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium
           difficile CIP 107932]
 gi|255316022|ref|ZP_05357605.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium
           difficile QCD-76w55]
 gi|255518679|ref|ZP_05386355.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium
           difficile QCD-97b34]
 gi|255651801|ref|ZP_05398703.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium
           difficile QCD-37x79]
 gi|260684827|ref|YP_003216112.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium
           difficile CD196]
 gi|260688485|ref|YP_003219619.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium
           difficile R20291]
 gi|306521589|ref|ZP_07407936.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium
           difficile QCD-32g58]
 gi|260210990|emb|CBA66282.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium
           difficile CD196]
 gi|260214502|emb|CBE06998.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium
           difficile R20291]
          Length = 302

 Score = 38.9 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 32  CN----LWSGREQDRLSAQCRFCDT--DFVGIQGTK--GGRYNVDQLADLIEEQWITGEK 83
           C          +      +C FC+T  D+      +  G  Y+V  L   IE+  I  E+
Sbjct: 64  CPHKAIYKGETKICLDQDKCEFCETCLDYCVNNAREIVGQEYSVRDLVKEIEKDRIFYEE 123

Query: 84  EGRYCVLTGGEPLLQVDV---PLIQALNKRGFEIAVETNG 120
            G    L+GGE + Q       +I     +G  +A++T G
Sbjct: 124 SGGGVTLSGGEVMAQDMDFICGVINMCKSKGIHVAIDTCG 163


>gi|256958884|ref|ZP_05563055.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           DS5]
 gi|257078915|ref|ZP_05573276.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           JH1]
 gi|256949380|gb|EEU66012.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           DS5]
 gi|256986945|gb|EEU74247.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           JH1]
          Length = 324

 Score = 38.9 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            R S          DR   +C +C     G+   K  +   D   ++I    I  ++  +
Sbjct: 15  VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 63

Query: 87  YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
              LTGGEPL++ + + LI+ + +  G E + + TNG
Sbjct: 64  KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100


>gi|239905086|ref|YP_002951825.1| hypothetical protein DMR_04480 [Desulfovibrio magneticus RS-1]
 gi|239794950|dbj|BAH73939.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 388

 Score = 38.9 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 17/96 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR        +    G  ++      LI+    TG       + T
Sbjct: 53  CNLAC--------KHCR----AEACLDPWPGE-FDTKDAKALIDTFPETG---SPIIIFT 96

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           GGEPLL+ D+  L++    R     +  NGT+  P+
Sbjct: 97  GGEPLLRPDIFDLVRHARSRDLRCVMAPNGTLVTPE 132


>gi|297588152|ref|ZP_06946796.1| radical SAM domain protein [Finegoldia magna ATCC 53516]
 gi|297574841|gb|EFH93561.1| radical SAM domain protein [Finegoldia magna ATCC 53516]
          Length = 399

 Score = 38.9 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 18/105 (17%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C+ C   +   +       + ++L  ++        +     +++GGEP+++ D
Sbjct: 81  DRCNLKCKGC---YSEDERCDKKELSFNELTKVVGNLKPLNLE---NIIISGGEPMIRKD 134

Query: 101 VPLIQALNKRGFE----IAVETNGTIE-------PPQGIDWICVS 134
           +  I  L K   +    I + TNGT+            +D + VS
Sbjct: 135 LDKILELIKTELKPDNLIVI-TNGTVHNFDMLENIAPYVDVLSVS 178


>gi|283797432|ref|ZP_06346585.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
           M62/1]
 gi|291074790|gb|EFE12154.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
           M62/1]
          Length = 309

 Score = 38.9 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 46  QCRFCDTDF--VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---D 100
            C  C TDF     +   G     ++L  ++ +     E  G    L+GGE + Q     
Sbjct: 92  ACGSC-TDFCISNARSIVGEEMEAEELVRILRQDRQFYEDSGGGVTLSGGEAMAQDMDYM 150

Query: 101 VPLIQALNKRGFEIAVETNG 120
             L+  L   G  + ++T G
Sbjct: 151 ENLLVRLQSEGIPVNMDTCG 170


>gi|261350290|ref|ZP_05975707.1| molybdenum cofactor biosynthesis protein [Methanobrevibacter
           smithii DSM 2374]
 gi|288861074|gb|EFC93372.1| molybdenum cofactor biosynthesis protein [Methanobrevibacter
           smithii DSM 2374]
          Length = 498

 Score = 38.9 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 17/92 (18%)

Query: 32  CNLWSGR-EQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL       +   + C +                  D++ +++                
Sbjct: 96  CNLRCPVCFANAAVSGCLY--------------EPTQDEIREMLRNLRNLKPHPTPAIQY 141

Query: 91  TGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
            GGEP ++ D+  L+    + GF  + + TNG
Sbjct: 142 AGGEPTVRKDLVELVAMAKEEGFTHVQIATNG 173


>gi|121535846|ref|ZP_01667645.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
 gi|121305561|gb|EAX46504.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
          Length = 457

 Score = 38.9 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 17/69 (24%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +CR+C   F G       R     ++A+   E  I      R+C +
Sbjct: 104 CNL-----------RCRYC---FAGTGDFGHDRGLMTKEVAEQAVEFLIASSGPRRHCEI 149

Query: 91  T--GGEPLL 97
              GGEPLL
Sbjct: 150 DFFGGEPLL 158


>gi|303239482|ref|ZP_07326009.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
 gi|302593045|gb|EFL62766.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
          Length = 441

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 47  CRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LI 104
           C+FC   + G  Q     + + +    +++      E        TGGEP    D+P LI
Sbjct: 125 CKFC---YAGCTQKKDQEQLDTEGFKKVLDIIRYEAEVPS--VSFTGGEPSTYKDLPELI 179

Query: 105 Q-ALNKRGFEIAVETNGTIEPPQG 127
           + A       + + TNGT+  P  
Sbjct: 180 KYASKTNKMRVNLITNGTLITPGK 203


>gi|222054727|ref|YP_002537089.1| molybdenum cofactor biosynthesis protein A [Geobacter sp. FRC-32]
 gi|221564016|gb|ACM19988.1| molybdenum cofactor biosynthesis protein A [Geobacter sp. FRC-32]
          Length = 326

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 74/200 (37%), Gaps = 37/200 (18%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +C +C  +    +   G   + + L  +  +    G ++ R   +TG
Sbjct: 12  NYLRLSVTDRCNLRCSYCMPEQGIEKLCHGDILSYEDLVSVARQAVAIGIEKIR---ITG 68

Query: 93  GEPLLQVDVPLIQALNKRG-----FEIAVETNGTIEPPQGIDW---------ICV-SPKA 137
           GEPL++ D+  I+ L +        ++ + TNG +      D          I + S K 
Sbjct: 69  GEPLVRRDI--IRFLKELSAVPGLKQLVLTTNGLLLAEMAEDLFKAGVQRLNISLDSLKE 126

Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA--------- 188
                I  G ++  V   ++ +     GF   + ++  M G   EE  + A         
Sbjct: 127 QTFAHITRGGDVHRVLRGLDAAEA--AGFPPHKINMVVMRGINDEEVLDFAAMTLERPYA 184

Query: 189 ---ISYC--FQNPKWR-LSV 202
              I Y    Q   WR LSV
Sbjct: 185 VRFIEYMPTLQADNWRDLSV 204


>gi|73541471|ref|YP_295991.1| pyrroloquinoline quinone biosynthesis protein PqqE [Ralstonia
           eutropha JMP134]
 gi|72118884|gb|AAZ61147.1| Coenzyme PQQ biosynthesis protein E [Ralstonia eutropha JMP134]
          Length = 389

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R    C FC    D+       G      Q  D+  +    G  +     
Sbjct: 20  PLWLLAELTYRCPLHCAFCSNPVDYARHTAELG----TGQWCDVFTQARALGAVQLG--- 72

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           L+GGEPLL+ D+  L++  +  GF   + T+G
Sbjct: 73  LSGGEPLLRKDLETLVRHAHGLGFYTNLITSG 104


>gi|32266519|ref|NP_860551.1| molybdenum cofactor biosynthesis protein A [Helicobacter hepaticus
           ATCC 51449]
 gi|32262570|gb|AAP77617.1| molybdenum cofactor biosynthesis protein A [Helicobacter hepaticus
           ATCC 51449]
          Length = 332

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 13/76 (17%)

Query: 46  QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
           +C++C  DT    +        +   L  ++E   +  +   +   +TGGEPLL+ D   
Sbjct: 24  RCQYCMPDTPESFVDE------SALPLPKMLEFIKLAIDNGIKKIRITGGEPLLRAD--- 74

Query: 104 IQALNKRGFEI--AVE 117
           + A   + +E    +E
Sbjct: 75  LSAFIAQIYEYAPHIE 90


>gi|317488728|ref|ZP_07947264.1| radical SAM superfamily protein [Eggerthella sp. 1_3_56FAA]
 gi|316912159|gb|EFV33732.1| radical SAM superfamily protein [Eggerthella sp. 1_3_56FAA]
          Length = 435

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 27/81 (33%), Gaps = 16/81 (19%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV-DQLADLIEEQWI 79
           G    F   + CN             C FC   F   Q     R  V D   D ++    
Sbjct: 85  GSKTFFLSLA-CN-----------RSCYFC---FNANQADYADRLRVNDAWRDEVDAFAD 129

Query: 80  TGEKEGRYCVLTGGEPLLQVD 100
               E  +  LTGGEPLL  D
Sbjct: 130 ACGGEVTHVGLTGGEPLLHAD 150


>gi|256962021|ref|ZP_05566192.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           Merz96]
 gi|256952517|gb|EEU69149.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           Merz96]
          Length = 324

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            R S          DR   +C +C     G+   K  +   D   ++I    I  ++  +
Sbjct: 15  VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 63

Query: 87  YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
              LTGGEPL++ + + LI+ + +  G E + + TNG
Sbjct: 64  KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100


>gi|255972893|ref|ZP_05423479.1| predicted protein [Enterococcus faecalis T1]
 gi|257422717|ref|ZP_05599707.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|255963911|gb|EET96387.1| predicted protein [Enterococcus faecalis T1]
 gi|257164541|gb|EEU94501.1| conserved hypothetical protein [Enterococcus faecalis X98]
          Length = 324

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            R S          DR   +C +C     G+   K  +   D   ++I    I  ++  +
Sbjct: 15  VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 63

Query: 87  YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
              LTGGEPL++ + + LI+ + +  G E + + TNG
Sbjct: 64  KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100


>gi|229545922|ref|ZP_04434647.1| possible molybdenum (Mo2+) cofactor biosynthesis enzyme
           [Enterococcus faecalis TX1322]
 gi|256853030|ref|ZP_05558400.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|229308990|gb|EEN74977.1| possible molybdenum (Mo2+) cofactor biosynthesis enzyme
           [Enterococcus faecalis TX1322]
 gi|256711489|gb|EEU26527.1| conserved hypothetical protein [Enterococcus faecalis T8]
          Length = 324

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            R S          DR   +C +C     G+   K  +   D   ++I    I  ++  +
Sbjct: 15  VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 63

Query: 87  YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
              LTGGEPL++ + + LI+ + +  G E + + TNG
Sbjct: 64  KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100


>gi|196234696|ref|ZP_03133509.1| molybdenum cofactor biosynthesis protein A [Chthoniobacter flavus
           Ellin428]
 gi|196221244|gb|EDY15801.1| molybdenum cofactor biosynthesis protein A [Chthoniobacter flavus
           Ellin428]
          Length = 337

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 19/143 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQG----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
           DR + +C +C    V   G     K      +++A L       G ++ R   LTGGEP 
Sbjct: 22  DRCNFRCTYCMPKEVFGHGYDFLPKEEVLTFEEIARLARIFVELGAEKLR---LTGGEPT 78

Query: 97  LQVDVP-LIQALNK-RG-FEIAVETNGTIEPPQ-------GIDWICVSPKAGCDLKIKGG 146
           L+ ++  L+  L   RG  ++ + TNG+    +       G+  + VS  A  D+  +  
Sbjct: 79  LRRELHRLVSELAAIRGVHDLTLTTNGSRLVEEARNLRNAGLQRLTVSVDALDDVTFRAM 138

Query: 147 QELKLVFPQV--NVSPENYIGFD 167
            ++     +V   +      GF 
Sbjct: 139 NDVSFPVHRVLRGIEAAREAGFA 161


>gi|169831504|ref|YP_001717486.1| radical SAM domain-containing protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638348|gb|ACA59854.1| Radical SAM domain protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 394

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C+ C   +               +   LI++     E      + 
Sbjct: 50  CNL-----------KCKHC---YASATAEPDPEELTTAEARRLIDDL---AEFRVPVLLF 92

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           +GGEPLL+ DV  L     +RG    V TNGT 
Sbjct: 93  SGGEPLLRPDVYELAAYARERGLRPVVSTNGTF 125


>gi|167463117|ref|ZP_02328206.1| molybdenum cofactor biosynthesis protein A [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 334

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 71/178 (39%), Gaps = 28/178 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA----DLIEEQWITGEKEGRYCVLTGGEPL 96
           DR + +C +C          +G  +  D       ++     +      R   LTGGEPL
Sbjct: 22  DRCNLRCVYC-------MPEEGMEFEPDDHLLTFNEITTVVRVLARLGVRKLRLTGGEPL 74

Query: 97  LQVDVP-LIQALNK-RGFE-IAVETNGTIEPP-------QGIDWICV---SPKAGCDLKI 143
           ++  +  L+  L+   G E IA+ TNG    P        G+  I +   S K      I
Sbjct: 75  VRKHIEDLVNRLSSIPGIEDIALTTNGMFLGPKAEQLKAAGLTRINISLDSLKEDRFAFI 134

Query: 144 KGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP-KWRL 200
             G +LK V   +N S +  +GF+  + ++  M G   +E  +  I     +P + R 
Sbjct: 135 TRGGKLKKVLEGLNASAK--VGFNPIKLNVVLMKGINDDEIVDF-IELSRDHPIQVRF 189


>gi|16330606|ref|NP_441334.1| hypothetical protein slr1507 [Synechocystis sp. PCC 6803]
 gi|1653098|dbj|BAA18014.1| slr1507 [Synechocystis sp. PCC 6803]
          Length = 360

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
                 + GGEPLL   +  +++ L  R   I + TN  I   + +D    SP     + 
Sbjct: 94  GAPVVSIPGGEPLLHPQIDEIVRGLVARRKFIYLCTN-AILLEKSLDKFQPSPYLTFSVH 152

Query: 143 IKGGQE 148
           + G +E
Sbjct: 153 LDGPRE 158


>gi|300114034|ref|YP_003760609.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Nitrosococcus watsonii C-113]
 gi|299539971|gb|ADJ28288.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Nitrosococcus watsonii C-113]
          Length = 373

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C          +     R +  +  D ++E             + 
Sbjct: 38  CNLAC--------AGCG----KIDYPEEILDRRLSAQECFDAVDECG------APIVSIP 79

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+  ++P ++  + KR   + + TN  +   + +     SP     + + G +E
Sbjct: 80  GGEPLIHKEMPQIVAGIVKRKKFVYLCTN-ALLLSKRLKDYTPSPYLTFSVHLDGNRE 136


>gi|257416003|ref|ZP_05592997.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           AR01/DG]
 gi|257157831|gb|EEU87791.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           ARO1/DG]
          Length = 324

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            R S          DR   +C +C     G+   K  +   D   ++I    I  ++  +
Sbjct: 15  VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 63

Query: 87  YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
              LTGGEPL++ + + LI+ + +  G E + + TNG
Sbjct: 64  KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100


>gi|307354666|ref|YP_003895717.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
           DSM 11571]
 gi|307157899|gb|ADN37279.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 426

 Score = 38.9 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 31/112 (27%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV---DQLADLIEEQWITGEKEGRYC 88
           CNL            C +C   + G         +    D+  + I+++ +  + +    
Sbjct: 97  CNL-----------ACSYC---YEGRGTVVSEDMSPEIRDKAIEAIKKRALPTDCKSLKI 142

Query: 89  VLTGGEPLLQVDVPLI-----------QALNKRGFEIAVETNGTIEPPQGID 129
           +L GGEPL+  D  L+             L   G  +   TNGT+     +D
Sbjct: 143 MLFGGEPLMNPDTGLVIMKELSRWCGENGLKYEGSMV---TNGTLATRDLVD 191


>gi|329962473|ref|ZP_08300473.1| radical SAM domain protein [Bacteroides fluxus YIT 12057]
 gi|328530029|gb|EGF56917.1| radical SAM domain protein [Bacteroides fluxus YIT 12057]
          Length = 426

 Score = 38.9 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 22/95 (23%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY-CV 89
           GCN             C +C       +G     +  D++ D I +         R    
Sbjct: 97  GCNF-----------ACPYC------FEGEHNNIFMTDEVEDGIIDFVKRKTDAKRIDVT 139

Query: 90  LTGGEPLL--QVDVPLIQALNKRG--FEIAVETNG 120
             GGEPLL  Q  V L + +   G  +   + TNG
Sbjct: 140 WFGGEPLLAFQRIVSLTRKMQSLGLAYSAGMITNG 174


>gi|315221939|ref|ZP_07863850.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus anginosus
           F0211]
 gi|315188905|gb|EFU22609.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus anginosus
           F0211]
          Length = 265

 Score = 38.9 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 21/99 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT +         R   D L + +  +   G
Sbjct: 33  VF--LQGC-----------KMRCQYCHNPDT-WAMETNNSRERTVEDILQEALRYRGFWG 78

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           +K G    ++GGE LLQ++    L     + G    ++T
Sbjct: 79  KKGG--ITVSGGEALLQINFVTALFTKAKELGIHCTLDT 115


>gi|302385460|ref|YP_003821282.1| molybdenum cofactor biosynthesis protein A [Clostridium
           saccharolyticum WM1]
 gi|302196088|gb|ADL03659.1| molybdenum cofactor biosynthesis protein A [Clostridium
           saccharolyticum WM1]
          Length = 322

 Score = 38.9 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C  +   +  + G      ++  + E     G    R   +TGGEPL++ D
Sbjct: 18  DRCNLRCVYCMPEEGIVPMSHGDILTYHEILRICEAGARLG---IRKVKVTGGEPLVRKD 74

Query: 101 VP-LIQALNK-RGFE-IAVETNG 120
           +  LI+ L    G E + + TNG
Sbjct: 75  IEVLIKGLQSIPGIEDVTMTTNG 97


>gi|255019723|ref|ZP_05291800.1| molybdenum cofactor biosynthesis protein A [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970791|gb|EET28276.1| molybdenum cofactor biosynthesis protein A [Acidithiobacillus
           caldus ATCC 51756]
          Length = 347

 Score = 38.9 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 46  QCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPL 103
           +C++C        GT    R    Q A+L+    +      ++  LTGGEPL+    V  
Sbjct: 42  RCQYC----TPEDGTPYFDRAEHLQRAELVRLLQLFVGMGLQHLRLTGGEPLIHPHVVDY 97

Query: 104 IQALNKRGF-EIAVETNG 120
           ++A    G  +I++ +NG
Sbjct: 98  VRAAKAMGIGKISISSNG 115


>gi|293393981|ref|ZP_06638287.1| pyruvate formate-lyase 2-activating enzyme [Serratia odorifera DSM
           4582]
 gi|291423541|gb|EFE96764.1| pyruvate formate-lyase 2-activating enzyme [Serratia odorifera DSM
           4582]
          Length = 233

 Score = 38.9 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 88  CVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
             L+GGE L+Q      L+  L   G   A+ET G
Sbjct: 62  VTLSGGEVLMQAGFATALLARLQALGINTAIETAG 96


>gi|256618973|ref|ZP_05475819.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           ATCC 4200]
 gi|256762400|ref|ZP_05502980.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           T3]
 gi|256598500|gb|EEU17676.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           ATCC 4200]
 gi|256683651|gb|EEU23346.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           T3]
          Length = 324

 Score = 38.9 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            R S          DR   +C +C     G+   K  +   D   ++I    I  ++  +
Sbjct: 15  VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 63

Query: 87  YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
              LTGGEPL++ + + LI+ + +  G E + + TNG
Sbjct: 64  KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100


>gi|255975948|ref|ZP_05426534.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           T2]
 gi|255968820|gb|EET99442.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           T2]
          Length = 324

 Score = 38.9 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            R S          DR   +C +C     G+   K  +   D   ++I    I  ++  +
Sbjct: 15  VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 63

Query: 87  YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
              LTGGEPL++ + + LI+ + +  G E + + TNG
Sbjct: 64  KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100


>gi|239983550|ref|ZP_04706074.1| hypothetical protein SalbJ_29215 [Streptomyces albus J1074]
 gi|291455365|ref|ZP_06594755.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291358314|gb|EFE85216.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 340

 Score = 38.9 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 38  CNLAC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  ++  L  +   + + TN  +   + +D    SP     + I G +E
Sbjct: 80  GGEPLMHPQIDEIVNQLVAKRKYVFLCTN-AMLMRKKMDKFIPSPYFAFAVHIDGLRE 136


>gi|77920509|ref|YP_358324.1| Fe-S oxidoreductases [Pelobacter carbinolicus DSM 2380]
 gi|77546592|gb|ABA90154.1| predicted Fe-S oxidoreductase [Pelobacter carbinolicus DSM 2380]
          Length = 293

 Score = 38.9 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 16/99 (16%)

Query: 46  QCRFCDTDFVGIQGT--KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP- 102
           +CRFC   F   +    +       +   +I E    G  +       GGEPLL   +  
Sbjct: 28  RCRFC---FARFKTERQESKEVGWQKSLAVIAEASRAGIAK---ITFAGGEPLLCPWLAD 81

Query: 103 LIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134
           +++     G    V TNG++       E  + IDW+ +S
Sbjct: 82  VLKHSKAFGMTTMVVTNGSLVTDRWLGENARYIDWLALS 120


>gi|89893625|ref|YP_517112.1| hypothetical protein DSY0879 [Desulfitobacterium hafniense Y51]
 gi|89333073|dbj|BAE82668.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 471

 Score = 38.9 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 62/185 (33%), Gaps = 43/185 (23%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              CNL          + C     + +    TK      ++L   +E  W T  K     
Sbjct: 111 TQRCNLRCSVCFADAGSNCLERQEEVIVEDPTK------EELLSQLETLWNTIGKCNLQ- 163

Query: 89  VLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
             +GGEP L+ D+P +I+A    G+    + TNG              P    DLK  G 
Sbjct: 164 -FSGGEPTLRNDLPGIIRAARLMGYTFFQLNTNGIRLAE--------DPGFVRDLKEAG- 213

Query: 147 QELKLVFPQVN-VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205
             L  VF Q + VS + Y     ++   Q             AI  C            H
Sbjct: 214 --LSTVFLQFDGVSDDVYERLRGQKLLAQ----------KQKAIENCR----------IH 251

Query: 206 KFIGI 210
           K +GI
Sbjct: 252 K-LGI 255


>gi|23016109|ref|ZP_00055869.1| COG1964: Predicted Fe-S oxidoreductases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 456

 Score = 38.9 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 14/103 (13%)

Query: 31  GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G   D     C             C T F   +  +G R ++ ++  +++    
Sbjct: 81  GCPHDCGLCPDHEQHSCLALVEVTDSCGLDCPTCFAQSRPGRGHR-SLAEVEAMLDAVVR 139

Query: 80  TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNG 120
           +         ++GGEP      + +++A   R    + + TNG
Sbjct: 140 SEGGSPDIVQISGGEPADHPQILEILRAAKARPIRHVMLNTNG 182


>gi|289769139|ref|ZP_06528517.1| radical SAM domain-containing protein [Streptomyces lividans TK24]
 gi|289699338|gb|EFD66767.1| radical SAM domain-containing protein [Streptomyces lividans TK24]
          Length = 590

 Score = 38.9 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 26/105 (24%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV------DQLADLIEEQWITGEKEG 85
           CNL            C +C   + G  G+   R         D+ A  I E         
Sbjct: 32  CNL-----------ACTYCY-LYEGPDGSWRDRPAAASAAVLDRTATRIAEHAERHALRD 79

Query: 86  RYCVLTGGEPLLQVDVPL------IQALNKRGFEIA--VETNGTI 122
              VL GGEPLL    PL      ++ L  RG ++   V+TN T+
Sbjct: 80  LALVLHGGEPLLAGAGPLAEVTGRVRELVPRGCQVHATVQTNATL 124


>gi|256785248|ref|ZP_05523679.1| hypothetical protein SlivT_12222 [Streptomyces lividans TK24]
          Length = 563

 Score = 38.9 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 26/105 (24%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV------DQLADLIEEQWITGEKEG 85
           CNL            C +C   + G  G+   R         D+ A  I E         
Sbjct: 5   CNL-----------ACTYCY-LYEGPDGSWRDRPAAASAAVLDRTATRIAEHAERHALRD 52

Query: 86  RYCVLTGGEPLLQVDVPL------IQALNKRGFEIA--VETNGTI 122
              VL GGEPLL    PL      ++ L  RG ++   V+TN T+
Sbjct: 53  LALVLHGGEPLLAGAGPLAEVTGRVRELVPRGCQVHATVQTNATL 97


>gi|197118877|ref|YP_002139304.1| glycerol dehydratase-activating enzyme [Geobacter bemidjiensis Bem]
 gi|197088237|gb|ACH39508.1| glycerol dehydratase-activating enzyme, putative [Geobacter
           bemidjiensis Bem]
          Length = 294

 Score = 38.9 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 6/102 (5%)

Query: 47  CRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--D 100
           C  C    D    G +   G   +V++    + +     E  G     +GGEPL Q    
Sbjct: 74  CSGCGACADACPTGARELVGRVMSVEEAMGSVLKDRFFYEDSGGGVTFSGGEPLSQPQFL 133

Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
             L+ A  +     AV+T G   P   +D   ++     DLK
Sbjct: 134 KALLAACREEEIHTAVDTAGICAPESLLDIAPLTDLFLFDLK 175


>gi|266835|sp|Q01060|PQQE_ESCVU RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|148416|gb|AAA24822.1| gluconic acid [Pantoea agglomerans]
          Length = 377

 Score = 38.9 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF   +       + +Q  ++  +    G  +  +  
Sbjct: 11  PLWLLAELTYRCPLQCPYCSNPLDFAAQEKE----LSTEQWIEVFRQARAMGSVQLGF-- 64

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            + GEPL++ D+P LI A    GF   + T+G
Sbjct: 65  -SAGEPLVRKDLPELIAAARDLGFYTNLITSG 95


>gi|21223640|ref|NP_629419.1| hypothetical protein SCO5273 [Streptomyces coelicolor A3(2)]
 gi|9968723|emb|CAC05946.1| hypothetical protein [Streptomyces coelicolor A3(2)]
          Length = 620

 Score = 38.9 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 26/105 (24%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV------DQLADLIEEQWITGEKEG 85
           CNL            C +C   + G  G+   R         D+ A  I E         
Sbjct: 71  CNL-----------ACTYCY-LYEGPDGSWRDRPAAASAAVLDRTATRIAEHAERHALRD 118

Query: 86  RYCVLTGGEPLLQVDVPL------IQALNKRGFEIA--VETNGTI 122
              VL GGEPLL    PL      ++ L  RG ++   V+TN T+
Sbjct: 119 LALVLHGGEPLLAGAGPLAEVTGRVRELVPRGCQVHATVQTNATL 163


>gi|313668419|ref|YP_004048703.1| hypothetical protein NLA_11150 [Neisseria lactamica ST-640]
 gi|313005881|emb|CBN87337.1| conserved hypothetical protein [Neisseria lactamica 020-06]
          Length = 369

 Score = 38.9 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 21/99 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRY-- 87
           CNL            C +C    +G  G K      +   + D+ +  +     +G+   
Sbjct: 13  CNL-----------NCTYCYVYHLGDDGWKDNPKLLSEKSIDDIEKSLFDLYSFQGKSFA 61

Query: 88  CVLTGGEPLLQVDVPLIQALNKRGFE------IAVETNG 120
            VL GGEP L     L   L K          ++++TNG
Sbjct: 62  IVLHGGEPFLLPKHRLEYLLKKLRHRLPEYTTVSIQTNG 100


>gi|77460368|ref|YP_349875.1| molybdenum cofactor synthesis-like [Pseudomonas fluorescens Pf0-1]
 gi|77384371|gb|ABA75884.1| putative molybdenum cofactor biosynthesis protein A [Pseudomonas
           fluorescens Pf0-1]
          Length = 322

 Score = 38.9 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 25/165 (15%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV---LTGGEPLLQVDVP 102
            C +C      +   K      D+L+     + +    E        +TGGEPL+   + 
Sbjct: 24  ACTYC------VPNGKRLVAAQDELSAEAMARGVAYLIEAAGIERLRITGGEPLVSPKLE 77

Query: 103 -LIQALNKRGFE-IAVETNG---TIEPPQGID----WICVS---PKAGCDLKIKGGQELK 150
             + A+ K G E I++ TNG     + P  +D     I VS     AG    I  G +L 
Sbjct: 78  SFMSAVGKMGLEDISLTTNGQLLAKKLPLLVDAGLRRINVSLDTLDAGAFRSIARGGDLA 137

Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
            V   ++ +    +     + ++ P+ G  L++   L + YC + 
Sbjct: 138 TVLDGMDQAAAAGMKI---KVNMVPLRGQNLDQVMPL-LDYCLER 178


>gi|294780074|ref|ZP_06745450.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           PC1.1]
 gi|294452826|gb|EFG21252.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           PC1.1]
 gi|323480628|gb|ADX80067.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           62]
          Length = 321

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            R S          DR   +C +C     G+   K  +   D   ++I    I  ++  +
Sbjct: 12  VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 60

Query: 87  YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
              LTGGEPL++ + + LI+ + +  G E + + TNG
Sbjct: 61  KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 97


>gi|257791825|ref|YP_003182431.1| Radical SAM domain-containing protein [Eggerthella lenta DSM 2243]
 gi|257475722|gb|ACV56042.1| Radical SAM domain protein [Eggerthella lenta DSM 2243]
          Length = 333

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L S    ++ + +C  C   +   +       + D+   +I+E    G    +  + +GG
Sbjct: 2   LVSWMTTNKCNLKCVHC---YQDAEEATDRELSTDEGKKMIDEIARAG---FKVMIFSGG 55

Query: 94  EPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           EPL++ D+  L+    + G      +NGT+  P+
Sbjct: 56  EPLMRPDIYELVAHAARAGLRPVFGSNGTLITPE 89


>gi|261400665|ref|ZP_05986790.1| putative radical SAM [Neisseria lactamica ATCC 23970]
 gi|269209574|gb|EEZ76029.1| putative radical SAM [Neisseria lactamica ATCC 23970]
          Length = 369

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 21/99 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRY-- 87
           CNL            C +C    +G  G K      +   + D+ +  +     +G+   
Sbjct: 13  CNL-----------NCTYCYVYHLGDDGWKDNPKLLSEKSIDDIEKSLFDLYSFQGKSFA 61

Query: 88  CVLTGGEPLLQVDVPLIQALNKRGFE------IAVETNG 120
            VL GGEP L     L   L K          ++++TNG
Sbjct: 62  IVLHGGEPFLLPKHRLEYLLKKLRHRLPEYTTVSIQTNG 100


>gi|254478043|ref|ZP_05091427.1| radical SAM domain protein [Carboxydibrachium pacificum DSM 12653]
 gi|214036047|gb|EEB76737.1| radical SAM domain protein [Carboxydibrachium pacificum DSM 12653]
          Length = 436

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 26/109 (23%)

Query: 26  FCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
           F R S    CNL           +C +C   FV     K G   V++ ++++       +
Sbjct: 96  FMRISLTEKCNL-----------KCNYC---FVRKIHDKKGDMPVEKFSEIMLWFIKENK 141

Query: 83  KEGRYCVLTGGEPLLQVDV-----PLIQALNKRGFEI-AVE---TNGTI 122
                    GGEPLL++D+      L++   + G  I  VE   TNGT+
Sbjct: 142 GSRPVIQYFGGEPLLRMDLIELGHLLLEKAKQNGEIIDYVEEIVTNGTL 190


>gi|160880809|ref|YP_001559777.1| radical SAM domain-containing protein [Clostridium phytofermentans
           ISDg]
 gi|160429475|gb|ABX43038.1| Radical SAM domain protein [Clostridium phytofermentans ISDg]
          Length = 464

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 29/111 (26%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGI---QGTKGGRYNVDQLADLIEEQWITGEKEG 85
             GCNL           +C +C   + G    +     R + +     I+      E + 
Sbjct: 92  TQGCNL-----------RCAYC--AYSGRYQNRTHSPKRMSFETAKRAIDMALSHSE-DT 137

Query: 86  RYCVLT--GGEPLLQVDVPLIQALNK--------RGFEIAVETNGTIEPPQ 126
           ++ + +  GGEPLL  ++PLI+   K        R    ++ TNGT+  P 
Sbjct: 138 QFIIFSFYGGEPLL--ELPLIKRCVKYIKQQAPNRDIIFSMTTNGTLLTPD 186


>gi|312879890|ref|ZP_07739690.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260]
 gi|310783181|gb|EFQ23579.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260]
          Length = 373

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 42/115 (36%), Gaps = 17/115 (14%)

Query: 13  LQGEGGHAGRVAVFCRF-----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
           LQG G   G      RF     SG  +      DR   +CR C   +      +G R+  
Sbjct: 8   LQG-GSFPGDS---LRFGPRRGSG-PVVVWHLTDRCGLRCRHC---YA-EATPEGERF-- 56

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
             L +                +L+GGEPL        ++   + G  +AV TNGT
Sbjct: 57  VSLREGFRCLETFAAWGAPAVLLSGGEPLESPHGRAFLERGAELGLSLAVSTNGT 111


>gi|260221248|emb|CBA29622.1| Ribosomal RNA large subunit methyltransferase N [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 466

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 14/101 (13%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   +  CRFC T   G          + QL      +       ++     V+ G
Sbjct: 104 CISSQAGCAVGCRFCSTGHQGFSRNLKTWEILAQLWFAEHFLRSHLGVSDRVISNVVMMG 163

Query: 93  -GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123
            GEPL Q  V L+ AL       G+      + V T+G + 
Sbjct: 164 MGEPL-QNYVALVPALKVMLDDHGYGLSRRRVTVSTSGVVP 203


>gi|257089787|ref|ZP_05584148.1| molybdenum cofactor biosynthesis protein [Enterococcus faecalis
           CH188]
 gi|256998599|gb|EEU85119.1| molybdenum cofactor biosynthesis protein [Enterococcus faecalis
           CH188]
          Length = 324

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            R S          DR   +C +C     G+   K  +   D   ++I    I  ++  +
Sbjct: 15  VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 63

Query: 87  YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
              LTGGEPL++ + + LI+ + +  G E + + TNG
Sbjct: 64  KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100


>gi|288920214|ref|ZP_06414529.1| Radical SAM domain protein [Frankia sp. EUN1f]
 gi|288348392|gb|EFC82654.1| Radical SAM domain protein [Frankia sp. EUN1f]
          Length = 412

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 42/122 (34%), Gaps = 19/122 (15%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A   +        Q     R  V   A  I       +      +L 
Sbjct: 47  CNLSCTYCYVYHLADQSW------RQQPVTMSRQVVAATATRIAAHAARHQLTQVEVILH 100

Query: 92  GGEPLLQVDVPLIQALNKR-----GFEIAVE----TNGTIEPPQGIDWICVS--PKAGCD 140
           GGEPLL      +  + ++     G + AVE    TNGT+  P  +D +CV    K G  
Sbjct: 101 GGEPLL-AGAAFLDHVARKVRSEVGPDTAVELTVQTNGTLLTPDFLD-LCVDLGMKVGVS 158

Query: 141 LK 142
           + 
Sbjct: 159 VD 160


>gi|262370614|ref|ZP_06063939.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262314414|gb|EEY95456.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 384

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 14/115 (12%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIE----EQWITGEKEGRY 87
            L           +C +CD +      G        + L  L+E    +      +    
Sbjct: 10  PLSLYIHMPWCVRKCPYCDFNSHAVPDGKLSLDLEQEYLHALVEDFKTQLEFAQGRHIHS 69

Query: 88  CVLTGGEPLL------QVDVPLIQALN--KRGFEIAVETN-GTIEPPQGIDWICV 133
             + GG P L      Q     ++AL   +   EI +E N GT+E     D++ V
Sbjct: 70  VFIGGGTPSLISAQGYQWLFAQLKALLPFEVDCEITLEANPGTVEHDPFADYLAV 124


>gi|139474347|ref|YP_001129063.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
           str. Manfredo]
 gi|134272594|emb|CAM30861.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
           str. Manfredo]
          Length = 263

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 71/178 (39%), Gaps = 36/178 (20%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        +F    GC L           +CR+C   DT  +    +K 
Sbjct: 16  TESFGSVDGPGIRFI----IF--LQGCKL-----------RCRYCHNPDTWEMETNNSKI 58

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVET 118
              N D L + ++ +   G+K G    ++GGE +LQ+D   I AL     K G    ++T
Sbjct: 59  RTVN-DVLKEALQYKHFWGKKGG--ITVSGGEAMLQID--FITALFIEAKKLGIHTTLDT 113

Query: 119 NG-TIEPPQGIDWI-----CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
            G T  P      +      V+     DLK    ++ K+V  Q N +   +  +  ++
Sbjct: 114 CGFTYRPTPEYHQVLDNLLAVTDLILLDLKEIDEKQHKIVTRQPNKNILQFARYLSDK 171


>gi|11499045|ref|NP_070279.1| pyruvate formate-lyase 2 activating enzyme (pflC) [Archaeoglobus
           fulgidus DSM 4304]
 gi|2649121|gb|AAB89799.1| pyruvate formate-lyase 2 activating enzyme (pflC) [Archaeoglobus
           fulgidus DSM 4304]
          Length = 302

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
               + +++E   +  +  G     +GGEP  Q D  + L++    RG   AV+T+G
Sbjct: 108 TASHVMEIVERDRVFYKNSGGGVTFSGGEPYFQPDFLLSLLEECRNRGISAAVDTSG 164


>gi|295106858|emb|CBL04401.1| Predicted Fe-S oxidoreductases [Gordonibacter pamelaeae 7-10-1-b]
          Length = 335

 Score = 38.9 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L S    ++ + +C  C   +   +       + D+   +I+E    G    +  + +GG
Sbjct: 2   LVSWMTTNKCNLKCVHC---YQDAEEASALELSTDEGRKMIDEIARAG---FKVMIFSGG 55

Query: 94  EPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127
           EPL++ D+  L+     RG      +NGT+  P+ 
Sbjct: 56  EPLMRPDIYELVAHAASRGLRPVFGSNGTLITPEA 90


>gi|282901597|ref|ZP_06309516.1| Radical SAM [Cylindrospermopsis raciborskii CS-505]
 gi|281193523|gb|EFA68501.1| Radical SAM [Cylindrospermopsis raciborskii CS-505]
          Length = 338

 Score = 38.9 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C               + +Q    +EE             + 
Sbjct: 38  CNL-----------ACSGCG-KIQHPTEVLKQNLSPEQCFAAVEECG------APVVSIP 79

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPLL   +  ++Q L  R   + + TNG +   + +     SP     + + G +E
Sbjct: 80  GGEPLLHPQIDQIVQGLVDRKKYVYLCTNG-LLLEKSLHRFKPSPYLTFSVHLDGMKE 136


>gi|257062911|ref|YP_003142583.1| GTP cyclohydrolase subunit MoaA [Slackia heliotrinireducens DSM
           20476]
 gi|256790564|gb|ACV21234.1| GTP cyclohydrolase subunit MoaA [Slackia heliotrinireducens DSM
           20476]
          Length = 333

 Score = 38.9 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 17/105 (16%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +CR+C  +      +     +++++  +I      G    R   LTGGEPL++  
Sbjct: 18  DRCNLRCRYCMPEEGVSALSHEDILSLEEIERIIRVAAGMGISRLR---LTGGEPLVRKG 74

Query: 101 VP-LI-QALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLK 142
           +  LI +A+   G E +A+ TNG +            PK   +LK
Sbjct: 75  IAGLIKEAMRTPGIESVALTTNGILL-----------PKMAAELK 108


>gi|225873965|ref|YP_002755424.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793882|gb|ACO33972.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196]
          Length = 347

 Score = 38.9 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 20/98 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C                   L +++               ++
Sbjct: 53  CNL-----------SCAYC--------NEYDDVSKPVPLEEMLRRIDHLARLGTSIITIS 93

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGI 128
           GGEP L  ++  +I  +   G    + TNG    P+ I
Sbjct: 94  GGEPTLHPELDQIIARIRHHGRIAGMITNGYYLVPERI 131


>gi|83310383|ref|YP_420647.1| lysine 2,3-aminomutase [Magnetospirillum magneticum AMB-1]
 gi|82945224|dbj|BAE50088.1| Lysine 2,3-aminomutase [Magnetospirillum magneticum AMB-1]
          Length = 344

 Score = 38.9 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
           CRFC        G         ++   +   ++ G  E R  +LTGG+PL+     L   
Sbjct: 106 CRFC--FRRARVGDGDATMTEAEIDTALA--YVAGRPEIREVILTGGDPLMLPPPRLAAL 161

Query: 107 LNKRGFEIAVE 117
           L + G    VE
Sbjct: 162 LGRIGAIAHVE 172


>gi|301057213|ref|ZP_07198342.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300448664|gb|EFK12300.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 392

 Score = 38.9 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 17/97 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       + + Q                G    +Q   LI++     +      + +
Sbjct: 50  CNLECVHCYAKAALQ-------------KSKGELTHEQGLRLIDDL---ADFGSPVILFS 93

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127
           GGEPL++ D+  L      +G    + TNGT+  PQ 
Sbjct: 94  GGEPLMRPDLVELAHYAVSKGMRAVISTNGTLITPQK 130


>gi|302548831|ref|ZP_07301173.1| predicted protein [Streptomyces viridochromogenes DSM 40736]
 gi|302466449|gb|EFL29542.1| predicted protein [Streptomyces viridochromogenes DSM 40736]
          Length = 358

 Score = 38.9 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 60  TKGGRYNVDQLAD----LIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEI 114
           T G  +   ++A           + G         TGGEP L  D+P LI    + G  +
Sbjct: 54  TNGADFLPARIAADADFATALAAVRGSLPTNEVHFTGGEPTLHPDLPGLITIARRLGLTV 113

Query: 115 AVETNG 120
            + +NG
Sbjct: 114 GLTSNG 119


>gi|229550115|ref|ZP_04438840.1| possible molybdenum (Mo2+) cofactor biosynthesis enzyme
           [Enterococcus faecalis ATCC 29200]
 gi|229304819|gb|EEN70815.1| possible molybdenum (Mo2+) cofactor biosynthesis enzyme
           [Enterococcus faecalis ATCC 29200]
          Length = 321

 Score = 38.9 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            R S          DR   +C +C     G+   K  +   D   ++I    I  ++  +
Sbjct: 12  VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 60

Query: 87  YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
              LTGGEPL++ + + LI+ + +  G E + + TNG
Sbjct: 61  KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 97


>gi|228997029|ref|ZP_04156660.1| Molybdenum cofactor biosynthesis protein A [Bacillus mycoides
           Rock3-17]
 gi|228762654|gb|EEM11570.1| Molybdenum cofactor biosynthesis protein A [Bacillus mycoides
           Rock3-17]
          Length = 307

 Score = 38.9 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 21/152 (13%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+ ++P LIQ LNK  G E I +
Sbjct: 14  SNDKILSFDEIERVARIFVSLGVRKLR---ITGGEPLLRKNLPELIQRLNKIDGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVSPKAGCDLKIKGGQ----ELKLVFPQVNVSPENYIG 165
            TNG++      D        + VS  +  + +         ++K V   +  + E  + 
Sbjct: 71  TTNGSLLKKFAPDLYKAGLSRVTVSLDSLDEERFSYLNGNRSKVKTVLAGIQAAAEVGMK 130

Query: 166 FDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197
                  +Q   G   ++   +A  Y  +N  
Sbjct: 131 IKM-NIVVQ--KGKNEQDIVQMA-QYFKENNH 158


>gi|255658569|ref|ZP_05403978.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Mitsuokella multacida DSM 20544]
 gi|260849375|gb|EEX69382.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Mitsuokella multacida DSM 20544]
          Length = 170

 Score = 38.9 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 21/93 (22%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F    GC             +C  C           G    +  L   I +  +    
Sbjct: 26  TIFV--QGC-----------KRRCPNCQNPETQ-PLEGGHEETLAALLQKIRQNPLLTG- 70

Query: 84  EGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
                  +GGEP LQ      L + ++  G +I
Sbjct: 71  ----VTFSGGEPFLQCAPLAKLAKEIHAMGLDI 99


>gi|220929027|ref|YP_002505936.1| molybdenum cofactor biosynthesis protein A [Clostridium
           cellulolyticum H10]
 gi|219999355|gb|ACL75956.1| molybdenum cofactor biosynthesis protein A [Clostridium
           cellulolyticum H10]
          Length = 328

 Score = 38.9 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C          +    ++  + +++    +      +   +TGGEPLL+ D
Sbjct: 21  DRCNLRCIYC---IPQFGVLQTREEDMLSIKEIVSFVKVASSHGIKKIKITGGEPLLRKD 77

Query: 101 V-PLIQALNKRGF--EIAVETNGTIEPPQGID 129
           +  L+  + +     +I++ TNG +      D
Sbjct: 78  IVSLVSCIKEIDSITDISMTTNGVLLKKYASD 109


>gi|94969161|ref|YP_591209.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551211|gb|ABF41135.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 479

 Score = 38.9 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 12/102 (11%)

Query: 31  GCNLWSGREQDRLSAQCR----FCD----TDFVGIQGTKGGRYNVDQLADL--IEEQWIT 80
           GC    G   D     C      CD    +  +    +   R +   LA +  + +  + 
Sbjct: 82  GCPYDCGLCSDHEQHSCLSLIEICDHCNLSCPICYAESGPSRQSYRSLAQIEKMLDAVVR 141

Query: 81  GEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNG 120
            E       ++GGEP +      ++     R    + V TNG
Sbjct: 142 NELHPDVVQISGGEPTIHPQFFEVLDLAKARPIRHLMVNTNG 183


>gi|331002311|ref|ZP_08325829.1| hypothetical protein HMPREF0491_00691 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410127|gb|EGG89561.1| hypothetical protein HMPREF0491_00691 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 280

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 59/199 (29%), Gaps = 44/199 (22%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
           F ++ G G    R A+F    GCN       +  +                         
Sbjct: 12  FSSVDGPGN---RAAIF--LQGCNFNCRYCHNPETRNHCINCMDCVPGCPTNALKNNNGK 66

Query: 47  -------CRFCD--TDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
                  C  CD   +      T    R    +  + I E         R    +GGE +
Sbjct: 67  VEFYPEKCIGCDNCINICKYGATPRIVRLTSRETFEKICENLPF----IRGVTFSGGECM 122

Query: 97  LQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
           L  D    +     ++     +++NG+++  + +  + V+     D+K     E   V  
Sbjct: 123 LYPDFMREVFSLCKEKNLGTLIDSNGSVDFKKHLGLLEVTDGVMLDIKAYDFDEHIKVTD 182

Query: 155 QVNVSPENYIGFDFERFSL 173
           + N        F  ER  L
Sbjct: 183 KGNDIVLKNALFLAERGKL 201


>gi|282163409|ref|YP_003355794.1| hypothetical protein MCP_0739 [Methanocella paludicola SANAE]
 gi|282155723|dbj|BAI60811.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 362

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 15/90 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR C +D       K G  +  ++    +      +       +T
Sbjct: 41  CNL-----------RCRHCGSDCTV---PKPGELSTGEIKAAFKSIASDYDARSIMVAVT 86

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           GGEPLL+ D+  ++   +  GF   + TNG
Sbjct: 87  GGEPLLRKDLFDVMGYAHGLGFPWGMVTNG 116


>gi|116750478|ref|YP_847165.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699542|gb|ABK18730.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 393

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            +       R + +C  C   +               +   ++++     +      + +
Sbjct: 40  PVVVWNVTRRCNLRCVHC---YAHARDQVFPDEMTGAEGKKVLDDL---AQFGTPVVLFS 93

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           GGEPL++ D+  L     ++G    + TNGT+  P 
Sbjct: 94  GGEPLMRPDLVELAAYAVEKGMRAVISTNGTLITPA 129


>gi|327535035|gb|AEA93869.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           OG1RF]
          Length = 321

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            R S          DR   +C +C     G+   K  +   D   ++I    I  ++  +
Sbjct: 12  VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 60

Query: 87  YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
              LTGGEPL++ + + LI+ + +  G E + + TNG
Sbjct: 61  KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 97


>gi|257086842|ref|ZP_05581203.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           D6]
 gi|256994872|gb|EEU82174.1| molybdenum cofactor biosynthesis protein A [Enterococcus faecalis
           D6]
          Length = 324

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            R S          DR   +C +C     G+   K  +   D   ++I    I  ++  +
Sbjct: 15  VRLS--------LTDRCDLRCTYC-MPATGLCFLKKEQLLTDD--EIIFLLRILAKEGIK 63

Query: 87  YCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
              LTGGEPL++ + + LI+ + +  G E + + TNG
Sbjct: 64  KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNG 100


>gi|220917203|ref|YP_002492507.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219955057|gb|ACL65441.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 334

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 17/105 (16%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           GR  V+ R S          DR + +C +C         T       D++A L+    I 
Sbjct: 18  GRRIVYLRLS--------LTDRCNFRCSYC---SPAAPETHEDPLARDEVARLV---RIF 63

Query: 81  GEKEGRYCVLTGGEPLLQVD-VPLIQAL-NKRGF-EIAVETNGTI 122
           G    R   LTGGEP L+ D + +I+ +    G  E+A+ TNG +
Sbjct: 64  GGLGIRRVRLTGGEPTLRRDVLDVIREVARAPGIEEVALTTNGHL 108


>gi|197122436|ref|YP_002134387.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter sp. K]
 gi|196172285|gb|ACG73258.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter sp. K]
          Length = 334

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 17/105 (16%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           GR  V+ R S          DR + +C +C         T       D++A L+    I 
Sbjct: 18  GRRIVYLRLS--------LTDRCNFRCSYC---SPAAPETHEDPLARDEVARLV---RIF 63

Query: 81  GEKEGRYCVLTGGEPLLQVD-VPLIQAL-NKRGF-EIAVETNGTI 122
           G    R   LTGGEP L+ D + +I+ +    G  E+A+ TNG +
Sbjct: 64  GGLGIRRVRLTGGEPTLRRDVLDVIREVARAPGIEEVALTTNGHL 108


>gi|86158254|ref|YP_465039.1| GTP cyclohydrolase subunit MoaA [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774765|gb|ABC81602.1| GTP cyclohydrolase subunit MoaA [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 334

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 17/105 (16%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           GR  V+ R S          DR + +C +C         T       D++A L+    I 
Sbjct: 18  GRRIVYLRLS--------LTDRCNFRCSYC---SPAAPETHEDPLARDEVARLV---RIF 63

Query: 81  GEKEGRYCVLTGGEPLLQVD-VPLIQAL-NKRGF-EIAVETNGTI 122
           G    R   LTGGEP L+ D + +I+ +    G  E+A+ TNG +
Sbjct: 64  GGLGIRRVRLTGGEPTLRRDVLDVIREVARAPGIEEVALTTNGHL 108


>gi|27378117|ref|NP_769646.1| hypothetical protein bll3006 [Bradyrhizobium japonicum USDA 110]
 gi|27351264|dbj|BAC48271.1| bll3006 [Bradyrhizobium japonicum USDA 110]
          Length = 386

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 22/116 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R    +  D  +E             +
Sbjct: 38  CNL-----------ACVGCGKIDY--PDAILNRRMTAQECWDAADECG------APMVAI 78

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
            GGEPL+  ++  +++ L  R   +++ TN  +   + +D    SP     + + G
Sbjct: 79  PGGEPLIHKEIGEIVRGLVARKKFVSLCTN-ALLLEKKLDLFEPSPYLFFSVHLDG 133


>gi|319946489|ref|ZP_08020725.1| pyruvate formate-lyase activating enzyme [Streptococcus australis
           ATCC 700641]
 gi|319747320|gb|EFV99577.1| pyruvate formate-lyase activating enzyme [Streptococcus australis
           ATCC 700641]
          Length = 264

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 21/99 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT +         R   D L + +  +   G
Sbjct: 33  VF--LQGC-----------QMRCQYCHNPDT-WAMETNMSRERTVDDVLEEALRYRGFWG 78

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           +K G    ++GGE LLQ+D  + L     + G    ++T
Sbjct: 79  QKGG--ITVSGGEALLQIDFLIALFTKAQELGIHCTLDT 115


>gi|319957591|ref|YP_004168854.1| GTP cyclohydrolase subunit moaa [Nitratifractor salsuginis DSM
           16511]
 gi|319419995|gb|ADV47105.1| GTP cyclohydrolase subunit MoaA [Nitratifractor salsuginis DSM
           16511]
          Length = 322

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 10/93 (10%)

Query: 33  NLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           N       +R + +C++C  +  F  +        + + L   I+     G  + R   L
Sbjct: 11  NYLRVSVTERCNFRCQYCMPEKPFSWVPQEN--LLSFEDLFKFIKIAIDEGVSKIR---L 65

Query: 91  TGGEPLL-QVDVPLIQALNK--RGFEIAVETNG 120
           TGGEPLL Q     ++ ++      ++A+ TNG
Sbjct: 66  TGGEPLLRQDLDRFVKMIHDYKPDIDLALTTNG 98


>gi|313204156|ref|YP_004042813.1| radical sam domain protein [Paludibacter propionicigenes WB4]
 gi|312443472|gb|ADQ79828.1| Radical SAM domain protein [Paludibacter propionicigenes WB4]
          Length = 282

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 9/75 (12%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQ 105
           C FC   F   + TK      D+   ++++          + +   GEPLL      ++ 
Sbjct: 18  CSFC---FKTSRATKF--MTPDEFQTIVDKIRPFTNYIYLHVL---GEPLLHPQLDEILS 69

Query: 106 ALNKRGFEIAVETNG 120
                G  I + TNG
Sbjct: 70  IAETAGLNINITTNG 84


>gi|308274193|emb|CBX30792.1| hypothetical protein N47_E43040 [uncultured Desulfobacterium sp.]
          Length = 455

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 58/178 (32%), Gaps = 41/178 (23%)

Query: 31  GCNLWSGREQ--------------DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           GC    G                  R +  C++C   F   + +     ++  +    + 
Sbjct: 77  GCPFDCGLCALHRQITCTALLEITQRCNLSCKYC---FASSKKSAVPDPDIQTIEFWFKR 133

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNGTIEPPQGIDWICVS 134
                        L+GGEP L+ D+  +I+    +GF  I + TNG +   +  D+    
Sbjct: 134 VREAAPAC--NIQLSGGEPTLREDLFQIIEMGRNKGFGFIQLNTNG-LRLAEQQDYAA-- 188

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC 192
                  K+K      + F    +S E Y+             G  L  N  LAI  C
Sbjct: 189 -------KLKEAGLASVFFQFDGLSDETYLALR----------GQKLLANKLLAIEQC 229


>gi|20089678|ref|NP_615753.1| tungsten-containing aldehyde ferredoxin oxidoreductase cofactor
           modifying protein [Methanosarcina acetivorans C2A]
 gi|19914605|gb|AAM04233.1| tungsten-containing aldehyde ferredoxin oxidoreductase cofactor
           modifying protein [Methanosarcina acetivorans C2A]
          Length = 381

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 20/90 (22%)

Query: 27  CRF---SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            R    + CNL            CR+C   +           + + L  +I E    G +
Sbjct: 43  IRLETNTSCNL-----------HCRYC---YAQSGEDSVKIADFNVLKRIISEAKELGIR 88

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGF 112
                V+ GGEP L  +   LI  ++  G 
Sbjct: 89  S--VVVIGGGEPTLYPNFRELIAYIDSLGI 116


>gi|14330293|emb|CAC40787.1| MoaA protein [Eubacterium acidaminophilum]
          Length = 325

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +C +C       +        +++L ++       G  + R   +TG
Sbjct: 16  NYLRISVTDRCNLRCMYCMPQEGIPKRAHHDIMTLEELQEVAVALVELGIDKIR---ITG 72

Query: 93  GEPLLQVDVP-LIQALNK-RGF-EIAVETNG 120
           GEPL++  +  L++ L+K  G  EI + TNG
Sbjct: 73  GEPLVRKGIVGLVRELSKCEGLNEITLTTNG 103


>gi|224477241|ref|YP_002634847.1| Molybdenum cofactor biosynthesis protein A [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|7674139|sp|Q9ZIM6|MOAA_STACT RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|3955209|gb|AAC83144.1| MoaA [Staphylococcus carnosus]
 gi|222421848|emb|CAL28662.1| Molybdenum cofactor biosynthesis protein A [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 340

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D DFV +   +   ++  +    +       +       +TGG
Sbjct: 22  DRCNFRCDYCMPKEIFGD-DFVFLPKDELLSFSEMERIARVYTHLGVKKIR-----ITGG 75

Query: 94  EPLLQVDV-PLIQALNK-RGFE-IAVETNG 120
           EPL++ D+  LI ALN+  G E I + TNG
Sbjct: 76  EPLMRRDLYKLIAALNEIEGVEDIGLTTNG 105


>gi|301106560|ref|XP_002902363.1| molybdenum cofactor biosynthesis protein 1 A [Phytophthora
           infestans T30-4]
 gi|262098983|gb|EEY57035.1| molybdenum cofactor biosynthesis protein 1 A [Phytophthora
           infestans T30-4]
          Length = 301

 Score = 38.9 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFE-IAVETNG 120
           N+    ++I    +          LTGGEPLL+ D+  L+  L    G E + + TNG
Sbjct: 13  NLMTTLEIIRLAKVFASSGITRIRLTGGEPLLRRDLAELVAQLRAIPGIESVGITTNG 70


>gi|291326420|ref|ZP_06124398.2| pyruvate formate-lyase 1-activating enzyme [Providencia rettgeri
           DSM 1131]
 gi|291314456|gb|EFE54909.1| pyruvate formate-lyase 1-activating enzyme [Providencia rettgeri
           DSM 1131]
          Length = 265

 Score = 38.9 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 56/183 (30%), Gaps = 42/183 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G    V++L           
Sbjct: 44  VF--FQGC-----------LMRCLYCHNRDT----WDTHGGNIVTVEELMKEAVTYRHFM 86

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI----EPPQGIDWICVSP 135
              G     +GGE +LQ +      +A  K      ++TNG +         +  +    
Sbjct: 87  NATGGGVTASGGEAILQAEFVRDWFRACKKENIHTCLDTNGFVRRYDPVIDELMDVT--- 143

Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
               DL +   +++     Q  V   N+   +F R+          + N    + Y    
Sbjct: 144 ----DLVMLDLKQIDDEIHQKLVGVSNHRTLEFARY--------LAKRNQKTWVRYVVV- 190

Query: 196 PKW 198
           P W
Sbjct: 191 PGW 193


>gi|152969099|ref|YP_001334208.1| putative iron-sulfur modifier protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|329998396|ref|ZP_08303095.1| anaerobic sulfatase maturase [Klebsiella sp. MS 92-3]
 gi|150953948|gb|ABR75978.1| putative iron-sulfur modifier protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|328538696|gb|EGF64788.1| anaerobic sulfatase maturase [Klebsiella sp. MS 92-3]
          Length = 395

 Score = 38.9 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 26/102 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC--V 89
           CNL            CR+C   +     T   + +  +L   I           R    V
Sbjct: 35  CNL-----------ACRYC---YYPQDETSVNKMDDARLEQFIRRYIAAQPAGAREINFV 80

Query: 90  LTGGEPLLQVDVPLIQ---ALNKR----GFEI--AVETNGTI 122
             GGEPLL   +   +   AL  R    G  I  +++TNGT+
Sbjct: 81  WQGGEPLL-AGLSFYKKALALQARYAPDGVTISNSLQTNGTL 121


>gi|254254758|ref|ZP_04948075.1| hypothetical protein BDAG_04075 [Burkholderia dolosa AUO158]
 gi|124899403|gb|EAY71246.1| hypothetical protein BDAG_04075 [Burkholderia dolosa AUO158]
          Length = 386

 Score = 38.9 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 22/120 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +V++  + ++E             +
Sbjct: 38  CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLEAVDECG------APVVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
            GGEPLL  ++P +++ + KR   + + TN  +   + +D    SP     + + G +E+
Sbjct: 79  AGGEPLLHKEMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYQPSPYFVWSVHLDGDKEM 137


>gi|73668539|ref|YP_304554.1| tRNA-modifying enzyme [Methanosarcina barkeri str. Fusaro]
 gi|72395701|gb|AAZ69974.1| Fe-S oxidoreductase [Methanosarcina barkeri str. Fusaro]
          Length = 345

 Score = 38.9 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 72  DLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
           + I+E+W+ G +     +   GEP     +P LI+   KRGF   + TNGT+ 
Sbjct: 142 NAIKERWLEGNEPNNVAISLSGEPTFYPYLPELIEEYKKRGFTTFLVTNGTVP 194


>gi|150018612|ref|YP_001310866.1| molybdenum cofactor biosynthesis protein A [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905077|gb|ABR35910.1| molybdenum cofactor biosynthesis protein A [Clostridium
           beijerinckii NCIMB 8052]
          Length = 318

 Score = 38.9 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           N       D  + +C++C     GI          ++++  + +     G  + R   +T
Sbjct: 10  NYLRISVTDLCNLRCKYC-MPEKGIDKMWHKEILTLEEIEAITQSFVELGVDKVR---IT 65

Query: 92  GGEPLLQVD-VPLIQALNKRG--FEIAVETNG 120
           GGEPL++ + + LI  + K G   ++A+ TNG
Sbjct: 66  GGEPLVRKNILKLIDGIGKIGGVRDLAMTTNG 97


>gi|325265158|ref|ZP_08131884.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
           D5]
 gi|324029562|gb|EGB90851.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
           D5]
          Length = 302

 Score = 38.9 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 46  QCRFCDTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL---LQVD 100
            C  C TD+  +   +  G  Y VD+L   + +  +  E+ G    L+GGE +   +   
Sbjct: 84  ACGIC-TDYCNLNLREIAGKEYTVDELVKELRKDEMFYEESGGGVTLSGGEVMTADMDYL 142

Query: 101 VPLIQALNKRGFEIAVETNG 120
             L++ L+  G  + ++T G
Sbjct: 143 EALVKKLHHFGISVTIDTCG 162


>gi|294011401|ref|YP_003544861.1| molybdenum cofactor biosynthesis protein A [Sphingobium japonicum
           UT26S]
 gi|292674731|dbj|BAI96249.1| molybdenum cofactor biosynthesis protein A [Sphingobium japonicum
           UT26S]
          Length = 334

 Score = 38.9 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 13/88 (14%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +CR+C    +  + T   R  +  L ++     +   +  R   LTGGEPL++ D
Sbjct: 26  DRCDLRCRYC----MAERMTFLPRDQILTLEEIALLADLFIARGVRRIRLTGGEPLVRRD 81

Query: 101 VPLIQALNKRGFEI-------AVETNGT 121
           +  I  + + G  +        + TNGT
Sbjct: 82  I--IDLVRRIGRHVGAGLDELTLTTNGT 107


>gi|152995344|ref|YP_001340179.1| molybdenum cofactor biosynthesis protein A [Marinomonas sp. MWYL1]
 gi|150836268|gb|ABR70244.1| molybdenum cofactor biosynthesis protein A [Marinomonas sp. MWYL1]
          Length = 341

 Score = 38.9 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 15/88 (17%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C    +    T   R ++  L +++           +   +TGGEPL++ +
Sbjct: 23  DRCDFRCTYC----MDEDVTFMPRDHILSLEEIVHVAKTFISMGTKRIRITGGEPLVRKN 78

Query: 101 VPL-------IQALNKRGFEIAVETNGT 121
           +            L     E+ + TNG+
Sbjct: 79  ILWAIEQIANTDGLE----ELTITTNGS 102


>gi|51246024|ref|YP_065908.1| molybdenum cofactor biosynthesis protein A (MoaA) [Desulfotalea
           psychrophila LSv54]
 gi|50877061|emb|CAG36901.1| probable molybdenum cofactor biosynthesis protein A (MoaA)
           [Desulfotalea psychrophila LSv54]
          Length = 408

 Score = 38.9 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 41  DRLSAQCRFC---DTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
           DR + +C +C   D D      G      ++    +++    +      R   LTGGEPL
Sbjct: 88  DRCNLRCIYCMPEDEDGRHTTTGVILQHADLLTYEEILRVSRLATAMGIRKIRLTGGEPL 147

Query: 97  LQVD-VPLIQAL-NKRGFE-IAVETNGTI 122
           ++   +  IQ L   RG E +++ TNG +
Sbjct: 148 VRRGVLEFIQELKKDRGLEQLSLTTNGVL 176


>gi|332110434|gb|EGJ10757.1| ribonucleoside-triphosphate reductase, anaerobic-like protein
           [Rubrivivax benzoatilyticus JA2]
          Length = 230

 Score = 38.9 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 26/119 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           VF    GC             +C +C +       G  G  +  D++   +  +    + 
Sbjct: 28  VFV--QGCP-----------WRCVYCHNPALQRRDGAAGPGW--DEVVATLARRRGLLDG 72

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPK 136
                V +GGEP L   +P  +      GF + + + G            +DW+ +  K
Sbjct: 73  ----VVFSGGEPTLDPALPEAVATARGLGFAVGLHSAGIYPQKLAALLPQLDWVGLDLK 127


>gi|325968826|ref|YP_004245018.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28]
 gi|323708029|gb|ADY01516.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 412

 Score = 38.9 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 43/92 (46%), Gaps = 8/92 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L       R + +C  C   ++  IQG        ++   ++++     E      +++
Sbjct: 36  PLIFWNITYRCNLKCIHC---YINAIQGISRDELTTEEALRVVDD---AHELRTPLLIIS 89

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPL++ D+  +++  +    ++++ TNGT+
Sbjct: 90  GGEPLVREDITEVMRRASDYDIKVSLSTNGTL 121


>gi|320104529|ref|YP_004180120.1| GTP cyclohydrolase subunit MoaA [Isosphaera pallida ATCC 43644]
 gi|319751811|gb|ADV63571.1| GTP cyclohydrolase subunit MoaA [Isosphaera pallida ATCC 43644]
          Length = 341

 Score = 38.9 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 64/170 (37%), Gaps = 24/170 (14%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C          +    + +++  ++      G  + R   LTGGEPL++ D
Sbjct: 33  DRCNIRCVYC-MPETVQFLPRAEILSFEEIERVVRVAVGLGINKLR---LTGGEPLVRRD 88

Query: 101 V-PLIQALNK-RGFE-IAVETNGTIEPPQG------------IDWICVSPKAGCDLKIKG 145
           +  L+  L    G + + + TNG +  P              +    + P +  +L    
Sbjct: 89  LTKLVARLTAIPGIQDVGLTTNGLLLGPLAQPLWDAGLRRINVSLDTLDPVSFREL--TR 146

Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
              L+ V     +      GFD  + +   + G    +   LA  +C ++
Sbjct: 147 RDGLEQVIE--GILAAKRAGFDPVKINAVAIKGVTESQVVPLA-RFCREH 193


>gi|239939475|ref|ZP_04691412.1| molybdenum cofactor biosynthesis protein A [Streptomyces
           roseosporus NRRL 15998]
 gi|239985964|ref|ZP_04706628.1| molybdenum cofactor biosynthesis protein A [Streptomyces
           roseosporus NRRL 11379]
 gi|291442905|ref|ZP_06582295.1| molybdenum cofactor biosynthesis protein A [Streptomyces
           roseosporus NRRL 15998]
 gi|291345852|gb|EFE72756.1| molybdenum cofactor biosynthesis protein A [Streptomyces
           roseosporus NRRL 15998]
          Length = 339

 Score = 38.9 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIE-EQWITGEKEGRYCVLTGGEPLLQ 98
           DR + +C +C     G+    +      D++  L++      G  E R   LTGGEPLL+
Sbjct: 31  DRCNLRCTYC-MPAEGLDWLPRPELLTDDEVVRLVDVATRRLGITEVR---LTGGEPLLR 86

Query: 99  VDVP-LIQALNKR--GFEIAVETNG 120
             +P L+  L+      E+++ TNG
Sbjct: 87  RGLPGLVARLHALPDPPELSLTTNG 111


>gi|115622853|ref|XP_791955.2| PREDICTED: similar to MGC84142 protein, partial [Strongylocentrotus
           purpuratus]
          Length = 267

 Score = 38.9 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 13/112 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       +R + +C++C  +       K    + +++  L +     G  + R   LTG
Sbjct: 85  NYLRISLTERCNLRCQYCMPEEGVTLSPKERLLSTEEILHLAKLFVSEGVDKIR---LTG 141

Query: 93  GEPLLQVDV-PLIQALNK-RGF-EIAVETNG-TIE------PPQGIDWICVS 134
           GEPL++ D+  +I+ L +  G  +IA+ TNG T+          G+D I +S
Sbjct: 142 GEPLVRKDIVEIIEGLRELEGLKQIAMTTNGVTLAKRLPALKKAGLDLINIS 193


>gi|187776896|ref|ZP_02993369.1| hypothetical protein CLOSPO_00435 [Clostridium sporogenes ATCC
           15579]
 gi|187775555|gb|EDU39357.1| hypothetical protein CLOSPO_00435 [Clostridium sporogenes ATCC
           15579]
          Length = 300

 Score = 38.9 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 43  LSAQCRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
              +C FC   T+F      +  G      ++   I +  +  E+ G     +GGEP+L 
Sbjct: 80  DEGKCNFCGKCTNFCPNNAREYVGKDLTSQEIIKEIIKDEVFYEESGGGVTFSGGEPMLH 139

Query: 99  VDVP--LIQALNKRGFEIAVETNG 120
            D    +++  N RG    ++T+G
Sbjct: 140 ADFINGILEECNVRGIHTTIDTSG 163


>gi|71003083|ref|XP_756222.1| hypothetical protein UM00075.1 [Ustilago maydis 521]
 gi|46096227|gb|EAK81460.1| hypothetical protein UM00075.1 [Ustilago maydis 521]
          Length = 1048

 Score = 38.9 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 33/101 (32%)

Query: 32  CNLWSGREQDRLSAQCRFC---D----TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           CNL           +C +C   D    T    +  T      V +LA L   Q +   + 
Sbjct: 259 CNL-----------RCLYCMPEDGVPLTPHANLLSTS----EVQRLATLFVSQGVNKIR- 302

Query: 85  GRYCVLTGGEPLLQVDVPLI----QALNKRGFE-IAVETNG 120
                LTGGEP ++ D+P I      L + G E I + TNG
Sbjct: 303 -----LTGGEPTIRSDLPQIVTSLNTLKQHGLEQIGITTNG 338


>gi|170748996|ref|YP_001755256.1| molybdenum cofactor biosynthesis protein A [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655518|gb|ACB24573.1| molybdenum cofactor biosynthesis protein A [Methylobacterium
           radiotolerans JCM 2831]
          Length = 340

 Score = 38.9 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 24/166 (14%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C    +  Q T   R ++  L +L        E+  R   LTGGEPL++ D
Sbjct: 30  DRCDLRCTYC----MSEQMTFLPRRDLLTLEELDRLCSAFVERGVRRIRLTGGEPLVRRD 85

Query: 101 -VPLIQAL---NKRGF--EIAVETNGTIEPPQGIDWI------------CVSPKAGCDLK 142
            + L+++L      G   E+ + TNGT+   +  D               + P       
Sbjct: 86  VIRLLESLSRHLDTGTLDELTLTTNGTMLAHRARDLAACGVRRINVSLDTLDPDR-YRAV 144

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
            + G  L +V   ++ +    +       +L+ ++   LE+    A
Sbjct: 145 TRRGD-LSVVLDGLDAAQAAGLAVKLNVVALRDVNEDELEDLVRFA 189


>gi|182420408|ref|ZP_02951630.1| molybdenum cofactor biosynthesis protein A [Clostridium butyricum
           5521]
 gi|237669106|ref|ZP_04529090.1| molybdenum cofactor biosynthesis protein A [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182375774|gb|EDT73372.1| molybdenum cofactor biosynthesis protein A [Clostridium butyricum
           5521]
 gi|237657454|gb|EEP55010.1| molybdenum cofactor biosynthesis protein A [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 327

 Score = 38.9 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 10/113 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C     GI   K    ++    ++I    +  +       +TGGEPL++ D
Sbjct: 18  DRCNLRCVYC-MPENGINLVKHD--DILSYEEIIRLCRMFSKLGISKVKITGGEPLVRKD 74

Query: 101 V-PLIQALNK-RGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
           V  LI+ + +  G E + + TNG I     ID +    K+G D        LK
Sbjct: 75  VYKLIKGIKEVEGIENVTLTTNG-ILLEGMIDDLV---KSGLDAVNISIDTLK 123


>gi|115378926|ref|ZP_01466061.1| organic radical activating enzyme family protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|310822219|ref|YP_003954577.1| organic radical activating enzyme family protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|115364076|gb|EAU63176.1| organic radical activating enzyme family protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|309395291|gb|ADO72750.1| Organic radical activating enzyme family protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 218

 Score = 38.9 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 42/134 (31%), Gaps = 36/134 (26%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +     TL G G   G         GC           S +C  C +       T+ G
Sbjct: 10  YPV----HTL-GPGARIGIW-----LQGC-----------SIRCPGCISADTWT--TERG 46

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
              V  + + I       +       ++GGEP  Q      L+ +L          T+G 
Sbjct: 47  WTTVHAVMEAITPWLAQADG----VTISGGEPFDQPEALRALLMSLRAS-------THGD 95

Query: 122 IEPPQGIDWICVSP 135
           I    G  W  ++P
Sbjct: 96  ILVYSGHSWEALAP 109


>gi|282855977|ref|ZP_06265268.1| Fe-S oxidoreductase [Pyramidobacter piscolens W5455]
 gi|282586196|gb|EFB91473.1| Fe-S oxidoreductase [Pyramidobacter piscolens W5455]
          Length = 542

 Score = 38.9 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 15/85 (17%)

Query: 31  GCNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRY--NVDQLADLIEEQWITGEKEG 85
           GCN+      D  SA    C  C           G R   ++D++ D+I +    G    
Sbjct: 186 GCNVPWAILMDPTSACNLHCTGC------WAAEYGNRLNLSLDEIDDIIRQGKELGVSMY 239

Query: 86  RYCVLTGGEPLLQVDVPLIQALNKR 110
              + TGGEPL++ D  LI+   + 
Sbjct: 240 ---IYTGGEPLMRKDD-LIRICERH 260


>gi|229109614|ref|ZP_04239203.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock1-15]
 gi|228673862|gb|EEL29117.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock1-15]
          Length = 333

 Score = 38.9 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  +Q         D++  L       G  + R   LTG
Sbjct: 18  DRCNFRCTYCMPAEVFGPD--YAFLQEEL--LLTFDEIERLARLFISMGVNKIR---LTG 70

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           GEPLL+  +P LI  L    G + I + TNG
Sbjct: 71  GEPLLRKHLPTLIARLANLEGLQDIGLTTNG 101


>gi|161614797|ref|YP_001588763.1| hypothetical protein SPAB_02549 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161364161|gb|ABX67929.1| hypothetical protein SPAB_02549 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 215

 Score = 38.9 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 25/160 (15%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101
           +C +C   DT         G    V+ L   +          G     +GGE +LQ +  
Sbjct: 2   RCLYCHNRDT----WDTHGGKEITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFV 57

Query: 102 -PLIQALNKRGFEIAVETNG-TIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNV 158
               +A  K G    ++TNG        ID  + V+     DLK     E+     Q  V
Sbjct: 58  RDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDLKQMN-DEI----HQNLV 112

Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
              N+   +F ++          ++N  + I Y    P W
Sbjct: 113 GVSNHRTLEFAQY--------LSKKNVKVWIRYVVV-PGW 143


>gi|94986648|ref|YP_594581.1| Fe-S oxidoreductases [Lawsonia intracellularis PHE/MN1-00]
 gi|94730897|emb|CAJ54260.1| predicted Fe-S oxidoreductases [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 394

 Score = 38.9 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 9/93 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVG--IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
            +       R + +C  C   +     +       + +Q   LI++            +L
Sbjct: 40  PVVVWNTTRRCNLKCVHC---YATALDEEKGADPMSTEQGKALIDDL---AAYGAPVLLL 93

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           +GGEPL++ D+  L      +G    + TNGT+
Sbjct: 94  SGGEPLVRNDLVELAAYATSQGMRAVISTNGTL 126


>gi|321478555|gb|EFX89512.1| hypothetical protein DAPPUDRAFT_310642 [Daphnia pulex]
          Length = 618

 Score = 38.9 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           N       +R + +C++C     G+   TK       ++  +       G  + R   LT
Sbjct: 57  NYLRISLTERCNLRCQYC-MPAGGVDLTTKDKLLTTSEIIKIASAFVEEGVDKIR---LT 112

Query: 92  GGEPLLQVDV-PLIQALNKRG--FEIAVETNG 120
           GGEP ++ D+  L+  L K      +A+ TNG
Sbjct: 113 GGEPSIRPDIVELVGTLKKLDGLKTLAMTTNG 144


>gi|268678801|ref|YP_003303232.1| molybdenum cofactor biosynthesis protein A [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268616832|gb|ACZ11197.1| molybdenum cofactor biosynthesis protein A [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 322

 Score = 38.9 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 20/168 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           +R + +C++C         +   + N+    DL     +  ++      +TGGEPLL+ D
Sbjct: 19  ERCNFRCQYC---MPEKPFSWVPKENLLSFEDLFLFVKVAIDEGISKIRITGGEPLLRTD 75

Query: 101 VP-LIQAL--NKRGFEIAVETNGTI-------EPPQGIDWICV---SPKAGCDLKIKGGQ 147
           +   I  +  +K G ++A+ TNG +           G+  + V   S KA    K+    
Sbjct: 76  LDKFIAMINHHKSGLDLALTTNGFLLKGAAQKLKDAGLKRVNVSLDSLKADVAAKMAQKD 135

Query: 148 ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
            L  V  Q  +     +G    + ++ P+ G   +E  +  + Y    
Sbjct: 136 VLTRV--QEGIEEALRVGLKV-KINMVPIQGINADEVLD-VLEYAKAR 179


>gi|330828770|ref|YP_004391722.1| Tungsten-containing aldehyde ferredoxin oxidoreductase cofactor
           modifying protein [Aeromonas veronii B565]
 gi|328803906|gb|AEB49105.1| Tungsten-containing aldehyde ferredoxin oxidoreductase cofactor
           modifying protein [Aeromonas veronii B565]
          Length = 294

 Score = 38.9 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 11/85 (12%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D+ + +C +C   +      +    + + L  ++ E    G  +  +C   GGEP    +
Sbjct: 6   DKCNLKCVYC---YNEFSEKRQKDIDHNSLMRILLEAKKIGVFDINFC---GGEPF--SN 57

Query: 101 VPLIQALN---KRGFEIAVETNGTI 122
              +  L    + GF++ + TNGT+
Sbjct: 58  RNFMSYLELAVELGFDVTINTNGTL 82


>gi|257064532|ref|YP_003144204.1| predicted Fe-S oxidoreductase [Slackia heliotrinireducens DSM
           20476]
 gi|256792185|gb|ACV22855.1| predicted Fe-S oxidoreductase [Slackia heliotrinireducens DSM
           20476]
          Length = 384

 Score = 38.9 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQ 98
           D    +C+ C   F G +  +  R + +Q+   +   E +        Y  ++GG+P+L 
Sbjct: 14  DDCDQRCKHCYI-FSGDENEELNRMSFEQMQQTLSNIEDFCETFGREPYLYISGGDPILH 72

Query: 99  VDV-PLIQALNKRGFEIAV 116
            D   L+  L  +G    +
Sbjct: 73  PDFWNLMDLLKSKGIRFTI 91


>gi|15673795|ref|NP_267970.1| pyruvate-formate lyase activating enzyme [Lactococcus lactis subsp.
           lactis Il1403]
 gi|281492407|ref|YP_003354387.1| pyruvate formate-lyase activating enzyme [Lactococcus lactis subsp.
           lactis KF147]
 gi|12724840|gb|AAK05911.1|AE006411_6 pyruvate-formate lyase activating enzyme [Lactococcus lactis subsp.
           lactis Il1403]
 gi|281376071|gb|ADA65562.1| Pyruvate formate-lyase activating enzyme [Lactococcus lactis subsp.
           lactis KF147]
 gi|326407302|gb|ADZ64373.1| pyruvate formate lyase activating enzyme [Lactococcus lactis subsp.
           lactis CV56]
          Length = 264

 Score = 38.9 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 36/123 (29%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +C++C   DT       
Sbjct: 19  TESFGSVDGPG---------VRFIIFMQGC-----------RMRCKYCHNPDT-----WA 53

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIA 115
            K  +     + D+++E        G      ++GGE LLQ+D  + L +     G    
Sbjct: 54  LKSDKATERTVEDVMDEALRFRGFWGEKGGITVSGGEALLQIDFVLALFKYAKSLGIHTT 113

Query: 116 VET 118
           ++T
Sbjct: 114 LDT 116


>gi|319939608|ref|ZP_08013967.1| pyruvate-formate lyase-activating enzyme [Streptococcus anginosus
           1_2_62CV]
 gi|319811197|gb|EFW07503.1| pyruvate-formate lyase-activating enzyme [Streptococcus anginosus
           1_2_62CV]
          Length = 265

 Score = 38.5 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 21/99 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC             +C++C   DT +         R   D L + +  +   G
Sbjct: 33  VF--LQGC-----------KMRCQYCHNPDT-WAMETNNSRERTVEDVLQEALRYRGFWG 78

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
           +K G    ++GGE LLQ++    L     + G    ++T
Sbjct: 79  KKGG--ITVSGGEALLQINFVTALFTKAKELGIHCTLDT 115


>gi|299531597|ref|ZP_07045002.1| molybdenum cofactor biosynthesis protein A [Comamonas testosteroni
           S44]
 gi|298720313|gb|EFI61265.1| molybdenum cofactor biosynthesis protein A [Comamonas testosteroni
           S44]
          Length = 380

 Score = 38.5 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 54/153 (35%), Gaps = 25/153 (16%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D ++  +  +     ++    ++     +      R   LTGGE
Sbjct: 48  DRCNFRCNYCMPKEVFDKNYQYLPHS-----SLLSFEEITRLARLFVAHGVRKLRLTGGE 102

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ ++  LI  L +      +  ++ + TN ++           G++ + VS     D
Sbjct: 103 PLLRKNIEALIAQLAELRTPDGQPLDLTLTTNASLLARKARALKEAGLNRVTVSLDGLDD 162

Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
              +   ++      V    E           +
Sbjct: 163 TVFRRMNDVDFPVTDVLAGIEAAQTAGLSHIKV 195


>gi|302527773|ref|ZP_07280115.1| coenzyme PQQ biosynthesis protein E [Streptomyces sp. AA4]
 gi|302436668|gb|EFL08484.1| coenzyme PQQ biosynthesis protein E [Streptomyces sp. AA4]
          Length = 357

 Score = 38.5 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R    C +C      +  ++    +  +  D + +    G  +     L+GGEPL ++D+
Sbjct: 16  RCPLHCPYCSNPLELV--SRAAEMSTVEWTDALSQARELGVLQVH---LSGGEPLARLDL 70

Query: 102 P-LIQALNKRGFEIAVETNG 120
           P L+   +  G  + + T+G
Sbjct: 71  PQLVTHASGLGCYVNLVTSG 90


>gi|261414650|ref|YP_003248333.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371106|gb|ACX73851.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 300

 Score = 38.5 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 19/98 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC--- 88
           CN    R  D    +C F             G  N +     +E+     +  G+     
Sbjct: 35  CN--GERPPDNNRGRCAF-----------GMGEMNFEIARAAVEKYAAERDASGKRLLRE 81

Query: 89  VL--TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
           V+  T GEPLL      L++     G  + + TNGT  
Sbjct: 82  VIPSTMGEPLLYSHFDELLELCRALGIPLNLTTNGTFP 119


>gi|254784467|ref|YP_003071895.1| oxygen-independent coproporphyrinogen III oxidase [Teredinibacter
           turnerae T7901]
 gi|237687347|gb|ACR14611.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Teredinibacter turnerae T7901]
          Length = 388

 Score = 38.5 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 10/108 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +   ++        +D  LAD   ++    +++ R     
Sbjct: 11  PLSLYVHIPWCVRKCPYCDFNSHSVRSELPVDAYIDALLADCSADRHFAQQRKIRSVFFG 70

Query: 92  GGEPLLQVDVP---LIQALNK-----RGFEIAVETN-GTIEPPQGIDW 130
           GG P L        L+  L +     R  EI +ETN GT E     D+
Sbjct: 71  GGTPSLLPGKAIARLLDGLRERLDFTRDCEITLETNPGTAEYSNFADY 118


>gi|91794038|ref|YP_563689.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Shewanella denitrificans OS217]
 gi|91716040|gb|ABE55966.1| coproporphyrinogen III oxidase, anaerobic [Shewanella denitrificans
           OS217]
          Length = 400

 Score = 38.5 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 10/101 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +  G  G    +  VD  LADL ++      ++     + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHGQHGELPQQAYVDALLADLAQDMDYVQGRQLHTIFIG 65

Query: 92  GGEPLL----QVDVPLI--QALN--KRGFEIAVETN-GTIE 123
           GG P L    Q++  L+  QAL   +R  EI +E N GT+E
Sbjct: 66  GGTPSLFDAKQIERLLLGVQALIPFERDIEITMEANPGTLE 106


>gi|39998236|ref|NP_954187.1| molybdenum cofactor biosynthesis protein A [Geobacter
           sulfurreducens PCA]
 gi|59798352|sp|Q747W9|MOAA_GEOSL RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|39985182|gb|AAR36537.1| molybdenum cofactor biosynthesis protein A, putative [Geobacter
           sulfurreducens PCA]
 gi|298507174|gb|ADI85897.1| pyranopterin triphosphate synthase [Geobacter sulfurreducens KN400]
          Length = 326

 Score = 38.5 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +C +C       +   G   + + L  +       G ++ R   +TG
Sbjct: 12  NYLRLSVTDRCNLRCSYCMPAEGVEKLAHGDILSYEDLFRIARAAVAIGIEKIR---ITG 68

Query: 93  GEPLLQVDV-PLIQALNK-RGFE-IAVETNGTIEPPQGID 129
           GEPL++  + P +  +    G   + + TNG + P    D
Sbjct: 69  GEPLVRKGIVPFLARIAAIEGLRQLVLTTNGLLLPEMAAD 108


>gi|317484198|ref|ZP_07943127.1| glycyl-radical enzyme activating family protein [Bilophila
           wadsworthia 3_1_6]
 gi|316924547|gb|EFV45704.1| glycyl-radical enzyme activating family protein [Bilophila
           wadsworthia 3_1_6]
          Length = 301

 Score = 38.5 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
           G   +   + + I++        G    L+GGE L Q    + L+ A  + G  +A+ET+
Sbjct: 102 GVERDTADVLEDIKKDMAFYRNSGGGVTLSGGEVLAQAAFALDLMAACKRYGIHLALETS 161

Query: 120 G 120
           G
Sbjct: 162 G 162


>gi|311695843|gb|ADP98716.1| molybdenum cofactor biosynthesis protein A [marine bacterium HP15]
          Length = 330

 Score = 38.5 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR   +C +C    +    T   R  V  L ++        +       LTG
Sbjct: 15  NYVRLSVTDRCDFRCVYC----MAEDMTFLPRQQVLTLEEIARVARSFVDLGTEKIRLTG 70

Query: 93  GEPLLQVD-VPLIQALNKRGFE-IAVETNGT 121
           GEP+++ D + L++ +   G    A+ TNG+
Sbjct: 71  GEPMVRKDILELVKEIGTYGLRDFAMTTNGS 101


>gi|116750480|ref|YP_847167.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699544|gb|ABK18732.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 377

 Score = 38.5 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 25/112 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR        +          D+   L+++            +LT
Sbjct: 38  CNLAC--------VHCR-----AAALDRPYENELKTDECFRLLDDIGTVA---SPIIILT 81

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ--------GIDWICVS 134
           GGEPLL+ D+  +    N +GF + +  NGT+  P+        GI  I VS
Sbjct: 82  GGEPLLRPDIFEIAAYGNAKGFRMTMAVNGTLLTPETAKRMIETGIQRISVS 133


>gi|294635581|ref|ZP_06714058.1| radical SAM protein [Edwardsiella tarda ATCC 23685]
 gi|291091033|gb|EFE23594.1| radical SAM protein [Edwardsiella tarda ATCC 23685]
          Length = 384

 Score = 38.5 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 40/118 (33%), Gaps = 35/118 (29%)

Query: 24  AVFCRFSG-CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY--------NVDQLADLI 74
             F R S  CNL            C +C   +V     K  RY         ++ L + +
Sbjct: 14  TFFVRISSDCNL-----------NCEYC---YVFNHIDKTSRYLPNLMSFDTINLLIERL 59

Query: 75  EEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN----------KRGFEIAVETNGTI 122
           ++       +    V  GGEPLL       + L           K GF +   TNG++
Sbjct: 60  KDYQYKYNLDEILIVFHGGEPLLMGPKRFTEVLKLISSGLSDIVKLGFSVQ--TNGSL 115


>gi|254166605|ref|ZP_04873459.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|289596367|ref|YP_003483063.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|197624215|gb|EDY36776.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|289534154|gb|ADD08501.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
          Length = 496

 Score = 38.5 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 29/134 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDF-VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL                 T +    + T   +Y   Q+ D ++E  +           
Sbjct: 126 CNLKCKHCYANA--------TPYPARDELTLEQKY---QVVDQLDEAGVAA------ISF 168

Query: 91  TGGEPLLQVDVPLIQA-LNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
           +GGEPL   D   +      +GF + V TNGT+          +S K    LK  G   +
Sbjct: 169 SGGEPLTNKDFLKVARYAKSKGFYLTVATNGTL----------ISEKMARKLKEVGIGYV 218

Query: 150 KLVFPQVNVSPENY 163
           ++     N    + 
Sbjct: 219 EISLDGPNAEIHDE 232


>gi|145592010|ref|YP_001154012.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145283778|gb|ABP51360.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 578

 Score = 38.5 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 8/91 (8%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           L      +R +  C  C   F             ++Q+  ++               ++G
Sbjct: 153 LAIIDVTNRCNMACPVC---FANAGAAGYVYEPTLEQIEYMLRTLRAQKPWPPNAIQISG 209

Query: 93  GEPLLQVDVPLIQAL-NKRGFEIAVE--TNG 120
           GEP L+ D+P I  +  K GF   +E  TNG
Sbjct: 210 GEPTLRDDLPEIVRMAKKLGFT-HIEINTNG 239


>gi|134300798|ref|YP_001114294.1| glycyl-radical activating family protein [Desulfotomaculum reducens
           MI-1]
 gi|134053498|gb|ABO51469.1| glycyl-radical enzyme activating protein family [Desulfotomaculum
           reducens MI-1]
          Length = 297

 Score = 38.5 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
           G R  V+++   IE   I  E+ G     +GGEPL+Q      L+ A   R    AV+T 
Sbjct: 99  GRRVAVEEVVREIERDRIFYEESGGGVTFSGGEPLVQPSFLHSLLDACQDREIATAVDTT 158

Query: 120 G------TIEPPQGIDWICVSPKAGCDLKIK 144
           G       +   + +D      K   D K K
Sbjct: 159 GYTAEETLLSISEKVDLFLYDIKLMDDEKHK 189


>gi|303244975|ref|ZP_07331299.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
 gi|302484686|gb|EFL47626.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
          Length = 109

 Score = 38.5 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 18/91 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C     G            +L  +++     G K+     ++
Sbjct: 20  CNL-----------KCFYC--HREGHDSENINLMTPSELGKIVKTSLKFGIKK---VKIS 63

Query: 92  GGEPLLQVDVP-LIQALNKRGFE-IAVETNG 120
           GGEPLL+ D+P +I++++    + I++ TNG
Sbjct: 64  GGEPLLRNDLPQIIESISDDNLKDISLTTNG 94


>gi|110679938|ref|YP_682945.1| radical SAM domain-containing protein [Roseobacter denitrificans
           OCh 114]
 gi|109456054|gb|ABG32259.1| radical SAM domain protein [Roseobacter denitrificans OCh 114]
          Length = 315

 Score = 38.5 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 8/89 (8%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCVLT 91
           LW        + +C  C   ++    T         D++   +++         R    T
Sbjct: 35  LWFNT-GTLCNIECVNC---YIESSPTNDALVYITADEVRSYLDQLETRAW-PVREIAFT 89

Query: 92  GGEPLLQV-DVPLIQALNKRGFEIAVETN 119
           GGEP +    + L +A  +RG+E+ V TN
Sbjct: 90  GGEPFMNPQMIDLARAALERGYEVLVLTN 118


>gi|91774057|ref|YP_566749.1| ribonucleoside-triphosphate reductase, anaerobic-like protein
           [Methanococcoides burtonii DSM 6242]
 gi|91713072|gb|ABE52999.1| Radical SAM protein [Methanococcoides burtonii DSM 6242]
          Length = 261

 Score = 38.5 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 24/104 (23%)

Query: 21  GRVAV--FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           G+ +V  F R  GC             +C +C         T     +V +L   I+   
Sbjct: 18  GKASVVLFLR--GCPF-----------RCPYC---HNYEILTVPDMVDVKELEKKIDSSS 61

Query: 79  ITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
           +            GGEPL Q +  + L     K+   + + TNG
Sbjct: 62  LFVSSVVFS----GGEPLAQKNALIHLASYAKKKDLLVGIHTNG 101


>gi|308172658|ref|YP_003919363.1| hypothetical protein BAMF_0767 [Bacillus amyloliquefaciens DSM 7]
 gi|307605522|emb|CBI41893.1| hypothetical protein yfkA1 [Bacillus amyloliquefaciens DSM 7]
          Length = 177

 Score = 38.5 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   +EE  +      R   +TGGEP+L +      
Sbjct: 45  RCEHCAVGYT-LQPKDPNALPIDLLLKRLEEIPLL-----RSISITGGEPMLSLKSVKEY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
            VPL++  ++RG    + +N T++ 
Sbjct: 99  VVPLLKYAHERGVRTQINSNLTLDI 123


>gi|194466736|ref|ZP_03072723.1| molybdenum cofactor biosynthesis protein A [Lactobacillus reuteri
           100-23]
 gi|194453772|gb|EDX42669.1| molybdenum cofactor biosynthesis protein A [Lactobacillus reuteri
           100-23]
          Length = 332

 Score = 38.5 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C     G+      +  + D++  L++     G  + R   LTGGEPLL+ 
Sbjct: 21  DRCNLRCVYC-MPAAGLDFFSQDKIMSQDEIVRLVQNFARLGVTKVR---LTGGEPLLRR 76

Query: 100 DVP 102
           D+ 
Sbjct: 77  DLA 79


>gi|71278987|ref|YP_271280.1| molybdenum cofactor biosynthesis protein A [Colwellia
           psychrerythraea 34H]
 gi|71144727|gb|AAZ25200.1| molybdenum cofactor biosynthesis protein A [Colwellia
           psychrerythraea 34H]
          Length = 323

 Score = 38.5 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 27/134 (20%)

Query: 47  CRFC--DTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
           C +C  D    G Q  +   + ++ ++  + +     G ++ R   +TGGEP L+ D+P 
Sbjct: 25  CTYCLPD----GYQCDQPRDFLSLCEIKRIAKAFAELGTEKIR---ITGGEPALRKDLPE 77

Query: 104 IQALNK--RGF-EIAVETNGT-------IEPPQGIDWICVS-----PKAGCDLKIKGGQE 148
           I  + K   G  ++A+ +NG             GID I +S     P+      I G  +
Sbjct: 78  IIRICKETAGIKKVAITSNGFKLPDHLPHWLDAGIDAINISIDSLDPRQFH--AITGHDK 135

Query: 149 LKLVFPQVNVSPEN 162
           LK +   ++++  +
Sbjct: 136 LKTILTGIDMALAD 149


>gi|255321817|ref|ZP_05362967.1| molybdenum cofactor biosynthesis protein A [Campylobacter showae
           RM3277]
 gi|255300921|gb|EET80188.1| molybdenum cofactor biosynthesis protein A [Campylobacter showae
           RM3277]
          Length = 322

 Score = 38.5 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 10/84 (11%)

Query: 42  RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           R + +C++C   T F         R N+    +L     +  ++  +   +TGGEPLL+ 
Sbjct: 20  RCNFRCKYCMPKTPFSWE-----PRENLLSFEELFLFVKVCLDEGVKKIRITGGEPLLRK 74

Query: 100 DVP-LIQAL--NKRGFEIAVETNG 120
           D+   I  +  +    ++A+ TNG
Sbjct: 75  DLDKFIAMINEHSPDVDLAITTNG 98


>gi|171909592|ref|ZP_02925062.1| Fe-S protein, radical SAM family [Verrucomicrobium spinosum DSM
           4136]
          Length = 342

 Score = 38.5 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 8/92 (8%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL--ADLIEEQWITGEKEGRYCVLT 91
           +W   E  R + +C FC   +        G  +  ++     +   W             
Sbjct: 15  VWRVTE--RCNLRCPFC--AYDARLERPRGVADPAEIRRFAAVLADWSQATGRPVLLSWL 70

Query: 92  GGEPLLQVDVPLIQALN--KRGFEIAVETNGT 121
           GGEPLL   +  +           ++  TNGT
Sbjct: 71  GGEPLLWKPLEALTRHCRDDLNLRLSTTTNGT 102


>gi|160901672|ref|YP_001567253.1| radical SAM domain-containing protein [Petrotoga mobilis SJ95]
 gi|160359316|gb|ABX30930.1| Radical SAM domain protein [Petrotoga mobilis SJ95]
          Length = 481

 Score = 38.5 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 21/92 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   +  + G K    + +++ D+I +    G       ++T
Sbjct: 121 CNL-----------RCVGC---YAAMYGHKY-MLSKEEIFDVIRQFNDLGIYFF---IIT 162

Query: 92  GGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
           GGEP +      +++  +   F +   TNGT+
Sbjct: 163 GGEPFVYPYLFDVLEEFSDSYFLLY--TNGTL 192


>gi|86143254|ref|ZP_01061656.1| molybdenum cofactor biosynthesis protein A [Leeuwenhoekiella
           blandensis MED217]
 gi|85830159|gb|EAQ48619.1| molybdenum cofactor biosynthesis protein A [Leeuwenhoekiella
           blandensis MED217]
          Length = 335

 Score = 38.5 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           N       ++ + +C +C     GI    +    + +++    +     G  + R   LT
Sbjct: 17  NYLRISLSEKCNLRCTYC-MPHDGIPLSPRANLMSAEEIEAFAKVFVENGVDKIR---LT 72

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETN 119
           GGEPL++ D   +++ L K   ++++ TN
Sbjct: 73  GGEPLVRKDFSDILKRLAKLPVKLSITTN 101


>gi|310644063|ref|YP_003948821.1| radical sam domain protein [Paenibacillus polymyxa SC2]
 gi|309249013|gb|ADO58580.1| Radical SAM domain protein [Paenibacillus polymyxa SC2]
          Length = 351

 Score = 38.5 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 28/112 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR---YC 88
           CNL           +C++C   +V        R    +  D  E++      + +     
Sbjct: 11  CNL-----------KCKYC---YVSKVPKMMSRETAAKAIDFTEKKLAANPLDPKDKIRI 56

Query: 89  VLTGGEPLLQ--VDVPLIQALNKRGFEIAVE------TNGTIEPPQGIDWIC 132
            L GGEPLL   +   L++ L ++   I  E      TNGTI   + +D++ 
Sbjct: 57  ALHGGEPLLNYPIIRYLVEELKQK---IHGEVSFRMTTNGTIYNQEILDYVS 105


>gi|310658965|ref|YP_003936686.1| molybdopterin biosynthesis protein a [Clostridium sticklandii DSM
           519]
 gi|308825743|emb|CBH21781.1| molybdopterin biosynthesis protein A [Clostridium sticklandii]
          Length = 316

 Score = 38.5 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 21/146 (14%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D  +  C +C    +     K    ++ ++ ++     +      +   LTGGEPL++  
Sbjct: 18  DLCNFNCEYC----MPEGIEKKDHSDILRIEEIENICKVAARNGIKKIRLTGGEPLVRKG 73

Query: 101 -VPLIQALN--KRGFEIAVETNGTIEPP-------QGIDWICV---SPKAGCDLKIKGGQ 147
            + LI  +       E+A+ TNG +           G+D I +   S       KI  G 
Sbjct: 74  ILSLINKIKSIDEITEVAITTNGVLLDEMAKDLKAAGLDRINLSLDSMDENVFRKITRGH 133

Query: 148 ELKLVFPQVNVSPENYIGFDFERFSL 173
           EL  V+  +    E+ +   FE   +
Sbjct: 134 ELSEVYKGL----ESALDAGFENIKI 155


>gi|261403573|ref|YP_003247797.1| Wyosine base formation domain protein [Methanocaldococcus vulcanius
           M7]
 gi|261370566|gb|ACX73315.1| Wyosine base formation domain protein [Methanocaldococcus vulcanius
           M7]
          Length = 315

 Score = 38.5 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 70  LADLIEEQWITGEKEGRYCVLT-GGEPLLQV-DVPLIQALNKRGFEIAVETNGTI-EPPQ 126
           + D + E+        ++  ++  GEP L      LIQ  +K+GF   V +NG + E  +
Sbjct: 115 VLDRVGEKKFEEALNPKHVAISLSGEPTLYPYLDELIQIFHKKGFTTFVVSNGILTEIIE 174

Query: 127 GID 129
            ID
Sbjct: 175 KID 177


>gi|120555983|ref|YP_960334.1| molybdenum cofactor biosynthesis protein A [Marinobacter aquaeolei
           VT8]
 gi|166217881|sp|A1U578|MOAA_MARAV RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|120325832|gb|ABM20147.1| GTP cyclohydrolase subunit MoaA [Marinobacter aquaeolei VT8]
          Length = 330

 Score = 38.5 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 12/97 (12%)

Query: 33  NLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           N       DR   +C +C   D  F+  Q        ++++A L       G ++ R   
Sbjct: 15  NYVRLSVTDRCDFRCVYCMAEDMTFLPRQ----QVLTLEEIARLARNFVALGTEKIR--- 67

Query: 90  LTGGEPLLQVD-VPLIQALNKRGFE-IAVETNGTIEP 124
           LTGGEPL++ D + L++ +   G    A+ TNG+  P
Sbjct: 68  LTGGEPLVRRDILELVREVGTYGLRDFAMTTNGSQLP 104


>gi|317133405|ref|YP_004092719.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Ethanoligenens harbinense YUAN-3]
 gi|315471384|gb|ADU27988.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Ethanoligenens harbinense YUAN-3]
          Length = 173

 Score = 38.5 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 26/94 (27%), Gaps = 23/94 (24%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
            RF     GC              C  C           G     +++   + E  +   
Sbjct: 21  IRFVVFAQGCP-----------HHCAGCQNAQTW-PFAGGHETPPEKVLAAMRENPLLAG 68

Query: 83  KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEI 114
                  L+GGEP  Q D    L +     G+ +
Sbjct: 69  -----LTLSGGEPFCQCDAMEELAEQAKDAGYSV 97


>gi|146304068|ref|YP_001191384.1| radical SAM domain-containing protein [Metallosphaera sedula DSM
           5348]
 gi|145702318|gb|ABP95460.1| Radical SAM domain protein [Metallosphaera sedula DSM 5348]
          Length = 321

 Score = 38.5 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 25/93 (26%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C FC  + + G     G     +QL  +I+             VL
Sbjct: 34  CNL-----------RCTFCNPSYYSGTLQEVG----TEQLKKIIDNL------RSTVVVL 72

Query: 91  T--GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           +  GGEP  + D + L++  +   F + + TNG
Sbjct: 73  SFEGGEPTTRPDILELLEYAHDGSFYVMLTTNG 105


>gi|116749801|ref|YP_846488.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698865|gb|ABK18053.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 377

 Score = 38.5 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 14/92 (15%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL                         T+     +++L  L++E     ++     +LT
Sbjct: 37  CNLNCVHCYISEPFH----------SGKTRAREMGLNRLLSLLDE---VADRGCLDLLLT 83

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           GGE L++ D P L     ++GF + V TNGT+
Sbjct: 84  GGEVLIRRDFPQLYAYAVRKGFRVTVFTNGTL 115


>gi|302540150|ref|ZP_07292492.1| coenzyme PQQ biosynthesis protein E [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302457768|gb|EFL20861.1| coenzyme PQQ biosynthesis protein E [Streptomyces himastatinicus
           ATCC 53653]
          Length = 371

 Score = 38.5 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 17/91 (18%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GC L            C +C       +  +      ++   ++ +    G        L
Sbjct: 24  GCPL-----------HCPYCSNPLQLTR--RSRELTGEEWERVLRQAAELGVVHTH---L 67

Query: 91  TGGEPLLQVDVPLI-QALNKRGFEIAVETNG 120
           +GGEPLL+ D+ +I  A    G    + T+G
Sbjct: 68  SGGEPLLRRDLEVIVAAAASAGLYTQLVTSG 98


>gi|296242925|ref|YP_003650412.1| radical SAM domain-containing protein [Thermosphaera aggregans DSM
           11486]
 gi|296095509|gb|ADG91460.1| Radical SAM domain protein [Thermosphaera aggregans DSM 11486]
          Length = 380

 Score = 38.5 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 46/138 (33%), Gaps = 31/138 (22%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           AVF  F+GCNL     Q+             V   G K   + +D L        + G+ 
Sbjct: 142 AVF--FAGCNLDCLFCQNWEHK-------KMVAGPGWKRYVFTIDGLL----RAGLDGKV 188

Query: 84  EGRYCVLTGGEPLLQVDVPL---IQALNKRG-----FEIAVETNGTIEPPQGIDWICVSP 135
                   GG+P       L    + L + G       +  ETNG + P           
Sbjct: 189 TC--VCFFGGDPGPHTVFALNFSRRLLKEAGERGVVKRVCWETNGLVNPAL--------F 238

Query: 136 KAGCDLKIKGGQELKLVF 153
           K    L ++ G  +K+ +
Sbjct: 239 KEMVRLSLESGGIVKVDW 256


>gi|294786900|ref|ZP_06752154.1| putative radical SAM domain protein [Parascardovia denticolens
           F0305]
 gi|315226535|ref|ZP_07868323.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
 gi|294485733|gb|EFG33367.1| putative radical SAM domain protein [Parascardovia denticolens
           F0305]
 gi|315120667|gb|EFT83799.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
          Length = 384

 Score = 38.5 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 34/136 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNV--------DQLADLIEEQWITGE 82
           CNL            C +C      ++  KG  +  +         ++A+ I  +     
Sbjct: 66  CNLT-----------CSYCYQKHESLKEQKGIWKLTIHKKDICDKREIANFIFAEMNRAR 114

Query: 83  KEGRYCVLTGGEPLLQVDV--PLIQALNK--RGFEIAVETNGTIEPPQGIDWICVSPKAG 138
            +     L GGEPL+ +D     ++ L    +   ++V TNGT+          +SP + 
Sbjct: 115 MKQIDLSLLGGEPLMYLDDIGDFVKELRALIQIRSVSVITNGTL----------ISPNSL 164

Query: 139 CDLKIKGGQELKLVFP 154
             L   G  E+++ F 
Sbjct: 165 QILDKIGCNEVQITFD 180


>gi|285017588|ref|YP_003375299.1| coproporphyrinogen III oxidase [Xanthomonas albilineans GPE PC73]
 gi|283472806|emb|CBA15311.1| putative coproporphyrinogen III oxidase protein [Xanthomonas
           albilineans]
          Length = 381

 Score = 38.5 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 10/99 (10%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91
            L           +C +CD +    +G       VD L   +++          + V   
Sbjct: 4   PLSLYVHLPWCVRKCPYCDFNSHAAKGALPFDAYVDALIRDLDQDLPLVWGRVVHSVFFG 63

Query: 92  GGEPLLQVDVPLIQALNKR--------GFEIAVETN-GT 121
           GG P L     + + L           G EI +ETN GT
Sbjct: 64  GGTPSLFPPEAIARFLEAASARLRFAPGLEITLETNPGT 102


>gi|225020332|ref|ZP_03709524.1| hypothetical protein CORMATOL_00339 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946721|gb|EEG27930.1| hypothetical protein CORMATOL_00339 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 225

 Score = 38.5 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 21/99 (21%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F    GC L           +C +C      +Q    G ++  +   L  ++    + 
Sbjct: 41  TIF--TQGCPL-----------RCVYC--HNPSLQAFGAGSHDFAEALALAVDRRSLIDG 85

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNK-RGFEIAVETNG 120
                V++GGEP     +   I A+++  G  + + T G
Sbjct: 86  ----VVISGGEPTAVPGLADAIAAVHETTGLPVGLHTCG 120


>gi|254468679|ref|ZP_05082085.1| molybdenum cofactor biosynthesis protein A [beta proteobacterium
           KB13]
 gi|207087489|gb|EDZ64772.1| molybdenum cofactor biosynthesis protein A [beta proteobacterium
           KB13]
          Length = 323

 Score = 38.5 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR   +C++C    +        ++ +  + ++     I          LTG
Sbjct: 11  NYLRLSVTDRCDFRCQYC----MSEDIEFMPKHQMLTIEEMNRLANIFINLGVEKIRLTG 66

Query: 93  GEPLLQVDV-PLIQALNKRG--FEIAVETNGT 121
           GEPL++  V  LI  L++     E+ + TNG+
Sbjct: 67  GEPLVRRGVNELIDKLSQNKKLKELTLTTNGS 98


>gi|197284599|ref|YP_002150471.1| pyruvate formate lyase-activating enzyme 1 [Proteus mirabilis
           HI4320]
 gi|227356781|ref|ZP_03841166.1| pyruvate formate-lyase activating enzyme [Proteus mirabilis ATCC
           29906]
 gi|194682086|emb|CAR41647.1| pyruvate formate-lyase activating enzyme [Proteus mirabilis HI4320]
 gi|227163071|gb|EEI48006.1| pyruvate formate-lyase activating enzyme [Proteus mirabilis ATCC
           29906]
          Length = 246

 Score = 38.5 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 33/101 (32%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G    VD+L           
Sbjct: 25  VF--FQGC-----------LMRCLYCHNRDT----WDTHGGQIVTVDELMKEAVTYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
              G     +GGE +LQ +      +A  K      ++TNG
Sbjct: 68  NASGGGVTASGGEAILQAEFVRDWFRACKKENIHTCLDTNG 108


>gi|209885787|ref|YP_002289644.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Oligotropha carboxidovorans OM5]
 gi|209873983|gb|ACI93779.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Oligotropha carboxidovorans OM5]
          Length = 400

 Score = 38.5 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 20/115 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C                R +  +  D  EE             + 
Sbjct: 38  CNLAC--------AGCG----KIDYPDAILNRRMSPQECWDAAEECG------APMVAIP 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
           GGEPL+  ++  +++ L  R   +++ TN  +   + +D    SP     + + G
Sbjct: 80  GGEPLIHKEIGEIVRGLVARKKFVSLCTN-AMLLEKKLDLFEPSPYLFFSVHLDG 133


>gi|124486340|ref|YP_001030956.1| protein tyrosine phosphatase [Methanocorpusculum labreanum Z]
 gi|124363881|gb|ABN07689.1| Radical SAM domain protein [Methanocorpusculum labreanum Z]
          Length = 381

 Score = 38.5 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 28/98 (28%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GC             +C++C             R  +D + D++         E +    
Sbjct: 14  GCP-----------GRCKYC-----WSSDETSPRMTLDTIDDIVT---WLKPLEDQRVTF 54

Query: 91  T--GGEPLL-------QVDVPLIQALNKRGFEIAVETN 119
           T  GGEPLL       Q    + + L     E A++TN
Sbjct: 55  TFHGGEPLLAGAEFYRQAFKKITEGLPHLSPEFAIQTN 92


>gi|126178826|ref|YP_001046791.1| radical SAM domain-containing protein [Methanoculleus marisnigri
           JR1]
 gi|125861620|gb|ABN56809.1| Radical SAM domain protein [Methanoculleus marisnigri JR1]
          Length = 398

 Score = 38.5 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            +      +R +  C  C   ++   G   GR +     + +       E      + +G
Sbjct: 39  PVVFWNITNRCNLLCSHC---YIR-AGPGRGREDELTTEEGLALIDDLAEMRVPLLLFSG 94

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           GEPL++ D   L     + G   A+ TNGT+  P 
Sbjct: 95  GEPLVREDFWELAGHAKESGLTTALSTNGTLITPA 129


>gi|219666435|ref|YP_002456870.1| glycyl-radical enzyme activating protein family [Desulfitobacterium
           hafniense DCB-2]
 gi|219536695|gb|ACL18434.1| glycyl-radical enzyme activating protein family [Desulfitobacterium
           hafniense DCB-2]
          Length = 310

 Score = 38.5 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 22/153 (14%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           G    V+ +   +E+  +   + G     +GGEPL+Q D     ++   +R  +  +ET 
Sbjct: 117 GKPTTVEDVLKEVEKDSVFYARSGGGLTFSGGEPLMQGDFVAETLKEARRRRLKTTIETC 176

Query: 120 GTIEPPQG-----------IDWICVSPKAGCDLKIKGG-QELKLVFPQVNVSPENYIGFD 167
           G ++               +D  C+ P+     K  G   EL  +    N   E++    
Sbjct: 177 GYVDWSTMEKVCQHLTSLIMDIKCMDPEKHQ--KYTGASNEL--ILDNFNKLCEHFPKL- 231

Query: 168 FERFSLQPMDGPF--LEENTNLAISYCFQNPKW 198
             +    P+   F   EE+      +    P  
Sbjct: 232 -PKLIRTPVVPGFNDREEDIREIAEFVKDKPNV 263


>gi|253701420|ref|YP_003022609.1| molybdenum cofactor biosynthesis protein A [Geobacter sp. M21]
 gi|251776270|gb|ACT18851.1| molybdenum cofactor biosynthesis protein A [Geobacter sp. M21]
          Length = 326

 Score = 38.5 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLT 91
           N       DR + +C +C     G++     R  + ++L  +  +    G ++ R   +T
Sbjct: 12  NYLRLSVTDRCNLRCSYC-MPAQGVKLLPQDRVLSYEELLRVATQAVAAGIEKIR---VT 67

Query: 92  GGEPLLQVDV-PLIQALNK-RGF-EIAVETNGTI 122
           GGEPL++  + P ++ L +  G  E+ + TNGT+
Sbjct: 68  GGEPLVRKGIVPFLKRLARIPGLEELVLTTNGTL 101


>gi|325962827|ref|YP_004240733.1| GTP cyclohydrolase subunit MoaA [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468914|gb|ADX72599.1| GTP cyclohydrolase subunit MoaA [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 369

 Score = 38.5 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 21/107 (19%)

Query: 21  GRVAVFCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEE 76
           GR A   R S    CNL           +C +C     G++   K    + +++  ++  
Sbjct: 32  GRRATDMRLSLTDKCNL-----------RCTYC-MPAEGLEWLAKQAVMSAEEIVRIVR- 78

Query: 77  QWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRG--FEIAVETNG 120
                +   R   LTGGEPL+    V +I AL +      I++ +NG
Sbjct: 79  -IGVEQLGVRELRLTGGEPLVRHDLVDIIAALRRNHPALPISMTSNG 124


>gi|317122250|ref|YP_004102253.1| GTP cyclohydrolase subunit MoaA [Thermaerobacter marianensis DSM
           12885]
 gi|315592230|gb|ADU51526.1| GTP cyclohydrolase subunit MoaA [Thermaerobacter marianensis DSM
           12885]
          Length = 360

 Score = 38.5 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 14/91 (15%)

Query: 41  DRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
           DR + +C +C    D  ++  +         D++  ++      G ++ R   LTGGEPL
Sbjct: 51  DRCNFRCVYCMPEGDIPWIPSE----EILTFDEIERVVRICAAMGVEKLR---LTGGEPL 103

Query: 97  LQVDV-PLIQALNK-RGFE-IAVETNGTIEP 124
           L+  V  L   L +  G   +++ TNG + P
Sbjct: 104 LRPGVEELTARLVRVPGIRSVSMTTNGFLLP 134


>gi|299138205|ref|ZP_07031385.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298600135|gb|EFI56293.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 472

 Score = 38.5 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 14/103 (13%)

Query: 31  GCNLWSGREQDRLSAQCR----FCD-------TDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G   D     C      CD         +    G     Y   +  + + +  +
Sbjct: 82  GCPYDCGLCPDHEQHSCLSLIEICDACNLSCPICYA-ESGPHRTTYRTMEQIEAMLDMVV 140

Query: 80  TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNG 120
             E E     ++GGEP +      ++ A  +R    + V TNG
Sbjct: 141 ANELEPDVVQISGGEPTIHPQFFEVLDAAKRRPIRHLMVNTNG 183


>gi|281357901|ref|ZP_06244386.1| glycyl-radical enzyme activating protein family [Victivallis
           vadensis ATCC BAA-548]
 gi|281315559|gb|EFA99587.1| glycyl-radical enzyme activating protein family [Victivallis
           vadensis ATCC BAA-548]
          Length = 305

 Score = 38.5 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 16/124 (12%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDR----LSAQCRFCDTDFVGIQGTK- 61
            EIF T        G  A F   + C     R +++       +C  C            
Sbjct: 52  SEIFFTP---SRCVGCGACF---TVCPASCHRMENKMHLFDRKRCTQCGICAANCPAGAL 105

Query: 62  ---GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAV 116
              G   + +++   + +  +  E  G    ++GGEPL   D    L+    K      V
Sbjct: 106 ELCGRHLSPEEVMAEVLKDRVFYETSGGGMTVSGGEPLAHFDYLFHLLSLARKEKIHTCV 165

Query: 117 ETNG 120
           ET+G
Sbjct: 166 ETSG 169


>gi|222056339|ref|YP_002538701.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
 gi|221565628|gb|ACM21600.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
          Length = 304

 Score = 38.5 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGT 121
               + L   I+ Q     K G    L+GGE LLQ      L++     GF   VET+G 
Sbjct: 114 EATPETLFATIQPQLEMVRKIGGL-TLSGGEALLQGEAVAHLLRLARDAGFHTTVETSGL 172

Query: 122 IEP 124
           +  
Sbjct: 173 LPL 175


>gi|24211998|sp|Q93KD1|MOAA_EUBAC RecName: Full=Molybdenum cofactor biosynthesis protein A
          Length = 325

 Score = 38.5 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +C +C       +        +++L ++       G  + R   +TG
Sbjct: 16  NYLRISVTDRCNLRCMYCMPQEGIPKRAHHDIMTLEELQEVAVALVELGIDKIR---ITG 72

Query: 93  GEPLLQVDVP-LIQALNK-RGF-EIAVETNG 120
           GEPL++  +  L++ L+K  G  EI + TNG
Sbjct: 73  GEPLVRKGIVGLVRELSKCEGLNEITLTTNG 103


>gi|328789404|ref|XP_624280.2| PREDICTED: molybdenum cofactor biosynthesis protein 1 [Apis
           mellifera]
          Length = 566

 Score = 38.5 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 26/114 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C +C     GI+ TK  G    D++  + +     G  + R   L
Sbjct: 66  CNL-----------RCLYC-MPAEGIKLTKNDGILRTDEIIKIADLFVNEGINKIR---L 110

Query: 91  TGGEPLLQVDV-PLIQALNKRG--FEIAVETNG---TIEPP----QGIDWICVS 134
           TGGEP ++ D+  +I  L +     ++A+ TNG   T + P     G+D I +S
Sbjct: 111 TGGEPTVRKDIVDIIAGLKQLSNLKQVAITTNGLTLTRQLPFLQKAGLDAINIS 164


>gi|329116400|ref|ZP_08245117.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           parauberis NCFD 2020]
 gi|326906805|gb|EGE53719.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           parauberis NCFD 2020]
          Length = 263

 Score = 38.5 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 67/179 (37%), Gaps = 38/179 (21%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +C++C   DT +     
Sbjct: 16  TESFGSVDGPG---------IRFIIFMQGC-----------KMRCQYCHNPDT-WEMETN 54

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117
               R   D L + ++ +   G+  G    ++GGE +LQ+D    L       G    ++
Sbjct: 55  KSQERTVKDVLNEALQYKHFWGKNGG--ITVSGGEAMLQIDFITALFTEAKALGIHTTLD 112

Query: 118 TNG-----TIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
           T G     T E  + +D  + V+     DLK    ++ K+V  Q N +   +  +  E+
Sbjct: 113 TCGFAYRATPEYHEKLDTLLAVTDLILLDLKEIDEEQHKIVTRQPNKNILLFAQYLSEK 171


>gi|192362408|ref|YP_001980845.1| molybdenum cofactor biosynthesis protein A [Cellvibrio japonicus
           Ueda107]
 gi|190688573|gb|ACE86251.1| Molybdenum cofactor biosynthesis protein A [Cellvibrio japonicus
           Ueda107]
          Length = 332

 Score = 38.5 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 13/95 (13%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV--- 89
           N       DR   +C +C          +      DQ+  + E   +             
Sbjct: 12  NYVRLSITDRCDLRCVYC-------MAEEMTFLPRDQVLSIEEFARLGAILVELGVTKLR 64

Query: 90  LTGGEPLL-QVDVPLIQALNK-RGF-EIAVETNGT 121
           +TGGEPL+ Q  + L+Q L +  G  E+ + TNGT
Sbjct: 65  ITGGEPLVRQGAITLMQRLGQIPGLRELCLTTNGT 99


>gi|48478268|ref|YP_023974.1| tRNA-modifying enzyme [Picrophilus torridus DSM 9790]
 gi|48430916|gb|AAT43781.1| Fe-S oxidoreductase [Picrophilus torridus DSM 9790]
          Length = 336

 Score = 38.5 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 41/117 (35%), Gaps = 28/117 (23%)

Query: 44  SAQCRFC------DTDFVGIQGTKG--GRYNVDQLADLIE----------EQWITGEKEG 85
           +  C FC      D+  +G +         ++     LI           E W       
Sbjct: 78  TENCEFCWRFQGFDSMHIGDEDDPEFILEESIKAHLKLISGFKGNPNVSSEAWEKAMHPK 137

Query: 86  RY-CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE-PPQGID------WICV 133
                LTG EP L   +  LI+A  KRG    + TNGT+    + +D      ++ V
Sbjct: 138 HMAISLTG-EPTLYTRLGELIEAATKRGISTFLVTNGTLPMVLEKLDPLPTQLYVTV 193


>gi|302544827|ref|ZP_07297169.1| PE-PGRS family protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302462445|gb|EFL25538.1| PE-PGRS family protein [Streptomyces himastatinicus ATCC 53653]
          Length = 371

 Score = 38.5 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 73  LIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +    + G         TGGEP L  ++P LI+   + G  + + +NG
Sbjct: 84  ALALAAVRGSLPTHEVHFTGGEPTLHPELPGLIRIARRLGLTVGLTSNG 132


>gi|154497199|ref|ZP_02035895.1| hypothetical protein BACCAP_01492 [Bacteroides capillosus ATCC
           29799]
 gi|150273598|gb|EDN00726.1| hypothetical protein BACCAP_01492 [Bacteroides capillosus ATCC
           29799]
          Length = 280

 Score = 38.5 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 42/155 (27%), Gaps = 42/155 (27%)

Query: 24  AVFCRFSGCNLWSGREQD-------------------------------RLSAQCRFCDT 52
           AVF    GCNL      +                                   +C  CD 
Sbjct: 24  AVF--LQGCNLSCAYCHNPETQNLCTGCGLCADHCPSGALERCPDGGVVWNPERCTGCDA 81

Query: 53  DFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQAL 107
                  +   K      +++   +E   +      R   ++GGE  L  +    L    
Sbjct: 82  CIRLCPSLASPKVRTMTPEEVMGAVEHNLLF----IRGITVSGGECTLYPEFLTGLFTLA 137

Query: 108 NKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
             RG     ++NGT+        + V      D+K
Sbjct: 138 RARGLTCLADSNGTVPLAPLSGLMAVCDGVMLDVK 172


>gi|116672386|ref|YP_833319.1| radical SAM domain-containing protein [Arthrobacter sp. FB24]
 gi|116612495|gb|ABK05219.1| Radical SAM domain protein [Arthrobacter sp. FB24]
          Length = 533

 Score = 38.5 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 16/91 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   F        G   + ++   ++ +           +L+
Sbjct: 132 CNL-----------RCPTC---FTSSGPQLQGVAPLAEVLANVDARLARENGRLDVLMLS 177

Query: 92  GGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
           GGEP L   +  L++ L  R    I V +NG
Sbjct: 178 GGEPTLYPHLAELLEELVARPIVRIMVNSNG 208


>gi|153938937|ref|YP_001391265.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum F
           str. Langeland]
 gi|166217247|sp|A7GEQ5|MOAA_CLOBL RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|152934833|gb|ABS40331.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum F
           str. Langeland]
          Length = 319

 Score = 38.5 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +C +C      ++         +++  +++   + G  + R+   TG
Sbjct: 10  NYLRVSVTDRCNLRCVYCMPPEGIVKKEHDNIMRYEEIFKVVKSASLLGVNKIRF---TG 66

Query: 93  GEPLLQVDV 101
           GEPL+  D+
Sbjct: 67  GEPLILKDI 75


>gi|160879625|ref|YP_001558593.1| molybdenum cofactor biosynthesis protein A [Clostridium
           phytofermentans ISDg]
 gi|160428291|gb|ABX41854.1| molybdenum cofactor biosynthesis protein A [Clostridium
           phytofermentans ISDg]
          Length = 332

 Score = 38.5 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 59/167 (35%), Gaps = 23/167 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C    +     K    ++    +++           R   +TGGEP+++ D
Sbjct: 18  DRCNLRCTYC----MPEDVEKLEHESILTYEEILRICKSASSLGIRKIKITGGEPMVRKD 73

Query: 101 -VPLIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS-PKAGCDL--KIKGGQ 147
            V L+  +    G E + + TNG +            +D + VS      D   KI    
Sbjct: 74  AVKLMANIKAIPGIEFVTLTTNGVLLEEHVEELAKIPLDGVNVSLDTLNTDTFKKITRRD 133

Query: 148 ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE---NTNLAISY 191
           E   V+  +    E  I          P  G   EE      LA+ Y
Sbjct: 134 EFLKVWNGIQKLIEAGIPTKINCV---PQKGVNEEELMDIAELAVKY 177


>gi|94993708|ref|YP_601806.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
           MGAS10750]
 gi|94547216|gb|ABF37262.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
           MGAS10750]
          Length = 287

 Score = 38.5 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 36/178 (20%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        +F    GC L           +C++C   DT  +    +K 
Sbjct: 40  TESFGSVDGPGIRFI----IF--LQGCKL-----------RCQYCHNPDTWEMETNNSKI 82

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVET 118
              N D L + ++ +   G+K G    ++GGE +LQ+D   I AL     K G    ++T
Sbjct: 83  RTVN-DVLKEALQYKHFWGKKGG--ITVSGGEAMLQID--FITALFIEAKKLGIHTTLDT 137

Query: 119 NG-TIEPPQGIDWI-----CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
            G T  P      +      V+     DLK    ++ K+V  Q N +   +  +  ++
Sbjct: 138 CGFTYRPTPEYHQVLDNLLAVTDLILLDLKEIDEKQHKIVTRQPNKNILQFARYLSDK 195


>gi|50913690|ref|YP_059662.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
           MGAS10394]
 gi|50902764|gb|AAT86479.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
           MGAS10394]
          Length = 287

 Score = 38.5 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 36/178 (20%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        +F    GC L           +C++C   DT  +    +K 
Sbjct: 40  TESFGSVDGPGIRFI----IF--LQGCKL-----------RCQYCHNPDTWEMETNNSKI 82

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVET 118
              N D L + ++ +   G+K G    ++GGE +LQ+D   I AL     K G    ++T
Sbjct: 83  RTVN-DVLKEALQYKHFWGKKGG--ITVSGGEAMLQID--FITALFIEAKKLGIHTTLDT 137

Query: 119 NG-TIEPPQGIDWI-----CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
            G T  P      +      V+     DLK    ++ K+V  Q N +   +  +  ++
Sbjct: 138 CGFTYRPTPEYHQVLDNLLAVTDLILLDLKEIDEKQHKIVTRQPNKNILQFARYLSDK 195


>gi|149174199|ref|ZP_01852827.1| molybdopterin cofactor synthesis protein A [Planctomyces maris DSM
           8797]
 gi|148847179|gb|EDL61514.1| molybdopterin cofactor synthesis protein A [Planctomyces maris DSM
           8797]
          Length = 333

 Score = 38.5 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 14/91 (15%)

Query: 41  DRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
           DR + +C +C    D  FV     +    + +++   I      G  + R   LTGGEPL
Sbjct: 24  DRCNIRCFYCMPSEDVQFVH----RSKIMSFEEIVRFIRLVVPLGVDKIR---LTGGEPL 76

Query: 97  LQVDVP-LIQALNK-RGFE-IAVETNGTIEP 124
           ++ ++P L++ +    G + I + TNG + P
Sbjct: 77  VRKNIPELVKMIADIPGIKDIGITTNGILLP 107


>gi|148379902|ref|YP_001254443.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum A
           str. ATCC 3502]
 gi|153932339|ref|YP_001384199.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum A
           str. ATCC 19397]
 gi|153937083|ref|YP_001387740.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum A
           str. Hall]
 gi|226949238|ref|YP_002804329.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum
           A2 str. Kyoto]
 gi|166217245|sp|A7FUZ6|MOAA_CLOB1 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|166217246|sp|A5I365|MOAA_CLOBH RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|254811539|sp|C1FPG7|MOAA_CLOBJ RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|148289386|emb|CAL83482.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum A
           str. ATCC 3502]
 gi|152928383|gb|ABS33883.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum A
           str. ATCC 19397]
 gi|152932997|gb|ABS38496.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum A
           str. Hall]
 gi|226843612|gb|ACO86278.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum
           A2 str. Kyoto]
 gi|322806201|emb|CBZ03769.1| molybdenum cofactor biosynthesis protein MoaA [Clostridium
           botulinum H04402 065]
          Length = 319

 Score = 38.5 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +C +C      ++         +++  +++   + G  + R+   TG
Sbjct: 10  NYLRVSVTDRCNLRCVYCMPPEGIVKKEHDNIMRYEEIFKVVKSASLLGVNKIRF---TG 66

Query: 93  GEPLLQVDV 101
           GEPL+  D+
Sbjct: 67  GEPLILKDI 75


>gi|145595122|ref|YP_001159419.1| radical SAM domain-containing protein [Salinispora tropica CNB-440]
 gi|145304459|gb|ABP55041.1| Radical SAM domain protein [Salinispora tropica CNB-440]
          Length = 523

 Score = 38.5 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 16/93 (17%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           +GCNL            C F D+      G        +Q+ D+     +  E E    +
Sbjct: 98  TGCNLDCPI--------C-FADSGH-QTDGYSINLAQCEQMLDVF----VASEGEAEVVM 143

Query: 90  LTGGEPLLQ-VDVPLIQALNKRGFE-IAVETNG 120
            +GGEP +    +  + A   R    + + TNG
Sbjct: 144 FSGGEPTIHRQILDFVDAAQARPIRAVNLNTNG 176


>gi|296132657|ref|YP_003639904.1| Radical SAM domain protein [Thermincola sp. JR]
 gi|296031235|gb|ADG82003.1| Radical SAM domain protein [Thermincola potens JR]
          Length = 331

 Score = 38.5 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 49  FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL 107
           +CD  +           N ++   L++E    G    +  + +GGEP ++ D+  L+   
Sbjct: 14  YCDHCYRDAGAKATEELNTEEGKALLDEIAKAG---FKIMIFSGGEPFMREDIFDLVAHA 70

Query: 108 NKRGFEIAVETNGTIEPPQ 126
            K G      TNGT+  P 
Sbjct: 71  KKLGLHPVFGTNGTLITPD 89


>gi|170755099|ref|YP_001781504.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum
           B1 str. Okra]
 gi|226704813|sp|B1IN35|MOAA_CLOBK RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|169120311|gb|ACA44147.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum
           B1 str. Okra]
          Length = 319

 Score = 38.5 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +C +C      ++         +++  +++   + G  + R+   TG
Sbjct: 10  NYLRVSVTDRCNLRCVYCMPPEGIVKKEHDNIMRYEEIFKVVKSASLLGVNKIRF---TG 66

Query: 93  GEPLLQVDV 101
           GEPL+  D+
Sbjct: 67  GEPLILKDI 75


>gi|162146326|ref|YP_001600785.1| radical SAM superfamily protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161784901|emb|CAP54444.1| radical SAM superfamily protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 330

 Score = 38.5 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 20/90 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C                ++ L   ++     G         T
Sbjct: 41  CNL-----------ACGYC-----NEFDDFSAPVPLEVLKARVDHLATLGTAS---ITFT 81

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           GGEPLL  D+  +++     G  +   TNG
Sbjct: 82  GGEPLLHPDLDKIVRIARDHGMIVTTITNG 111


>gi|124486007|ref|YP_001030623.1| hypothetical protein Mlab_1187 [Methanocorpusculum labreanum Z]
 gi|124363548|gb|ABN07356.1| Radical SAM domain protein [Methanocorpusculum labreanum Z]
          Length = 387

 Score = 38.5 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 21/96 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       R +  C          +       +V +  ++  +    G     + +L 
Sbjct: 93  CNLHCAGCYARATGMC-------GDEKPAGAEPMSVPEWENIFLQAEGLG---ISFILLA 142

Query: 92  GGEPLLQVDVPLIQALNKRG-----FEIAVETNGTI 122
           GGEPLL+ D  LI+A    G     F I   TNGT+
Sbjct: 143 GGEPLLRRD--LIEA--AAGHSSIIFPIF--TNGTL 172


>gi|297627043|ref|YP_003688806.1| Fe-S oxidoreductase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922808|emb|CBL57386.1| Fe-S oxidoreductase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 373

 Score = 38.5 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP- 102
              CR C            G    D+   +++E    G     + + TGG+P+ + D+  
Sbjct: 33  GLACRHC--RATAQPDPAPGELTTDEALGVLDEFAGFGS-PAPHVIFTGGDPMRRGDLDQ 89

Query: 103 LIQALNKRGFEIAV 116
           LI A N+RG  +++
Sbjct: 90  LIAAANQRGLGVSL 103


>gi|159038471|ref|YP_001537724.1| radical SAM domain-containing protein [Salinispora arenicola
           CNS-205]
 gi|157917306|gb|ABV98733.1| Radical SAM domain protein [Salinispora arenicola CNS-205]
          Length = 389

 Score = 38.5 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 15/94 (15%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              C L            CR                 + D+  DL+ +    G     + 
Sbjct: 20  TQACPLAC--------LHCR-----ASARPDRDRAELDTDEAIDLMAQIAALGRPTPLFV 66

Query: 89  VLTGGEPLLQVDVPLI-QALNKRGFEIAVETNGT 121
            +TGG+P  + D+ L+ +   + G  ++V  +GT
Sbjct: 67  -ITGGDPFQRPDLELLVRRGTELGLPVSVSPSGT 99


>gi|91201046|emb|CAJ74104.1| similar to moaA/nirJ/ppqE family of cofactor synthesis proteins
           [Candidatus Kuenenia stuttgartiensis]
          Length = 350

 Score = 38.5 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C   +           +++++  ++++    G K  +  +L 
Sbjct: 38  CNL-----------RCLYC---YSSAGFAAENELSLEEMKSVVDQAKGLGAK--KIILLG 81

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GGEPLL    V +I+ +N  G +  + TNG +
Sbjct: 82  GGEPLLYEGVVDIIKYINSIGLQQILFTNGVL 113


>gi|262194533|ref|YP_003265742.1| radical SAM protein [Haliangium ochraceum DSM 14365]
 gi|262077880|gb|ACY13849.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365]
          Length = 310

 Score = 38.5 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 25/148 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  CD             Y ++     ++      +      V+ 
Sbjct: 17  CNL-----------KCAGCD--HASPWFETKSLYALETFERDLDALTAVMDIGE--LVIA 61

Query: 92  GGEPLLQV-DVPLIQALNKRGFE--IAVETNGTI------EPPQGIDWICVSPKAGCDLK 142
           GGEPLL    +  ++   ++ +   + + TNG           Q +D I VS   G  ++
Sbjct: 62  GGEPLLHPELLSFLELAKRKRYADGVTLITNGVHLHRAPVALWQLLDGISVSRYPGVRIR 121

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFER 170
           +    E++ +  +   +        F+ 
Sbjct: 122 LSD-DEMRTLGTRHGTAVIIEESSTFKH 148


>gi|206975055|ref|ZP_03235969.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           H3081.97]
 gi|229138875|ref|ZP_04267455.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           BDRD-ST26]
 gi|206746476|gb|EDZ57869.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           H3081.97]
 gi|228644606|gb|EEL00858.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           BDRD-ST26]
          Length = 337

 Score = 38.5 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 14/89 (15%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C        D+  +Q       + D++  L       G  + R   LTGGE
Sbjct: 22  DRCNFRCTYCMPAEVFGADYAFLQEEF--LLSFDEIERLARLFISMGVNKIR---LTGGE 76

Query: 95  PLLQVDVP-LIQAL-NKRGFE-IAVETNG 120
           PLL+ D+  LI  L    G + I + TNG
Sbjct: 77  PLLRKDLSQLIARLTKLEGLKDIGLTTNG 105


>gi|52549924|gb|AAU83773.1| coenzyme PQQ synthesis protein [uncultured archaeon GZfos33H6]
          Length = 317

 Score = 38.5 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 17/88 (19%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY- 87
            +GC+             CR C   F   +   G   + ++     E+  +    +    
Sbjct: 22  LTGCDF-----------HCRGC---FRPARDGGGTLLSPEETLKRAEQACLKHYGKLPTK 67

Query: 88  CVLTGGEPLLQV--DVPLIQALNKRGFE 113
            ++TGGEP L     + L++ L ++GFE
Sbjct: 68  AMITGGEPTLDKEFLLTLVKGLEEKGFE 95


>gi|256832474|ref|YP_003161201.1| molybdenum cofactor biosynthesis protein A [Jonesia denitrificans
           DSM 20603]
 gi|256686005|gb|ACV08898.1| molybdenum cofactor biosynthesis protein A [Jonesia denitrificans
           DSM 20603]
          Length = 353

 Score = 38.5 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 41  DRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           D+ + +C +C     G++   K  + +VD++  +       G  E R   LTGGEPLL  
Sbjct: 46  DKCNLRCTYC-MPEEGMEWIAKSQQLSVDEMVRIAAVAVGHGITEIR---LTGGEPLLYP 101

Query: 100 D-VPLIQALNKRGF--EIAVETNG 120
             V + Q L       E+++ TNG
Sbjct: 102 QVVEITQRLAALDGAPEVSMTTNG 125


>gi|188585754|ref|YP_001917299.1| Radical SAM domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350441|gb|ACB84711.1| Radical SAM domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 327

 Score = 38.5 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 21/129 (16%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L S          C+ C   +             ++   L++E    G    +  + +GG
Sbjct: 2   LVSWNTTKSCHLNCKHC---YRDAGEADSRELTTEEGKKLLDEIKTAG---FKLIIFSGG 55

Query: 94  EPL-LQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK----IKGGQE 148
           EPL  Q    L+    K G    + T+GT           ++ K    LK    ++ G  
Sbjct: 56  EPLERQDIYKLVSYAKKIGLRPVLGTSGT----------TITRKVARKLKEAGAVRLGIS 105

Query: 149 LKLVFPQVN 157
           L  V P+V+
Sbjct: 106 LDSVHPEVH 114


>gi|161484628|ref|NP_064426.2| molybdenum cofactor biosynthesis protein 1 isoform 1 [Mus musculus]
 gi|226707540|sp|Q5RKZ7|MOCS1_MOUSE RecName: Full=Molybdenum cofactor biosynthesis protein 1; Includes:
           RecName: Full=Molybdenum cofactor biosynthesis protein
           A; Includes: RecName: Full=Molybdenum cofactor
           biosynthesis protein C
          Length = 636

 Score = 38.5 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +       K      +++  L       G  + R   LT
Sbjct: 80  CNL-----------RCQYCMPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 125

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GGEPL++ D V ++  L+   G   I + TNG
Sbjct: 126 GGEPLIRPDVVDIVARLHGLEGLRTIGLTTNG 157


>gi|40217429|emb|CAE46362.1| hypothetical protein C2_0004 [uncultured archaeon]
 gi|268323812|emb|CBH37400.1| hypothetical protein, radical SAM superfamily [uncultured archaeon]
          Length = 317

 Score = 38.5 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 17/88 (19%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY- 87
            +GC+             CR C   F   +   G   + ++     E+  +    +    
Sbjct: 22  LTGCDF-----------HCRGC---FRPARDGGGTLLSPEETLKRAEQACLKHYGKLPTK 67

Query: 88  CVLTGGEPLLQV--DVPLIQALNKRGFE 113
            ++TGGEP L     + L++ L ++GFE
Sbjct: 68  AMITGGEPTLDKEFLLTLVKGLEEKGFE 95


>gi|19745536|ref|NP_606672.1| putative pyruvate-formatelyase activating enzyme [Streptococcus
           pyogenes MGAS8232]
 gi|71902973|ref|YP_279776.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
           MGAS6180]
 gi|71910132|ref|YP_281682.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
           MGAS5005]
 gi|94989822|ref|YP_597922.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
           MGAS10270]
 gi|209558873|ref|YP_002285345.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
           NZ131]
 gi|306827942|ref|ZP_07461209.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
           ATCC 10782]
 gi|19747656|gb|AAL97171.1| putative pyruvate-formatelyase activating enzyme [Streptococcus
           pyogenes MGAS8232]
 gi|71802068|gb|AAX71421.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
           MGAS6180]
 gi|71852914|gb|AAZ50937.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
           MGAS5005]
 gi|94543330|gb|ABF33378.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
           MGAS10270]
 gi|209540074|gb|ACI60650.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
           NZ131]
 gi|304429861|gb|EFM32903.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
           ATCC 10782]
          Length = 287

 Score = 38.5 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 36/178 (20%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        +F    GC L           +C++C   DT  +    +K 
Sbjct: 40  TESFGSVDGPGIRFI----IF--LQGCKL-----------RCQYCHNPDTWEMETNNSKI 82

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVET 118
              N D L + ++ +   G+K G    ++GGE +LQ+D   I AL     K G    ++T
Sbjct: 83  RTVN-DVLKEALQYKHFWGKKGG--ITVSGGEAMLQID--FITALFIEAKKLGIHTTLDT 137

Query: 119 NG-TIEPPQGIDWI-----CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
            G T  P      +      V+     DLK    ++ K+V  Q N +   +  +  ++
Sbjct: 138 CGFTYRPTPEYHQVLDNLLAVTDLILLDLKEIDEKQHKIVTRQPNKNILQFARYLSDK 195


>gi|91978781|ref|YP_571440.1| radical SAM family protein [Rhodopseudomonas palustris BisB5]
 gi|91685237|gb|ABE41539.1| Radical SAM [Rhodopseudomonas palustris BisB5]
          Length = 359

 Score = 38.5 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100
           R +A C  C ++  G     G + ++     LI++    G         +GGEP+L    
Sbjct: 24  RCNAHCVHCYSN-SGPDADLGDQLSLQSGLSLIDQLADAG---VLVLAFSGGEPMLHRHW 79

Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGID 129
             L+    +RG  + + +NG+       D
Sbjct: 80  RELVAHAVQRGLSVNIASNGSCITDSNAD 108


>gi|302542868|ref|ZP_07295210.1| radical SAM [Streptomyces hygroscopicus ATCC 53653]
 gi|302460486|gb|EFL23579.1| radical SAM [Streptomyces himastatinicus ATCC 53653]
          Length = 321

 Score = 38.5 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 19/104 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            CR C   +         G  +      +I++    G ++ ++   
Sbjct: 19  CNL-----------NCRHC---YANSSSQGDHGDMSDADWIRVIDQLNGLGVRDVQFI-- 62

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICV 133
            GGEP L   +P  I+  +K    I V +N T   P+  + + +
Sbjct: 63  -GGEPTLHQSLPAFIRHAHKYAMRIEVFSNMTHIRPEVWEALTL 105


>gi|170289662|ref|YP_001736478.1| radical SAM domain-containing protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170173742|gb|ACB06795.1| Radical SAM domain protein [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 356

 Score = 38.5 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 26/121 (21%)

Query: 31  GCNL-WSGREQDRLSAQ-------CRFCDTDFVGIQGTKG----GRYNVDQLADLIEEQW 78
           GC+L W G +              C +C T     +G           ++  + LIEE  
Sbjct: 17  GCDLCWKGAKSVLFITGECPLYGSCFYC-TIADWRRGKGDLIIVNERTIEDESSLIEE-- 73

Query: 79  ITGEKEGRYCVLTGGEPLLQVDV--PLIQALNK---RGFEIAVETNGTIEPPQGIDWICV 133
                      +TGGEP +  D     ++ L +   R F + + TN       GID   +
Sbjct: 74  -IEYNSSLGVGITGGEPTIVPDRVYEYVKLLKERFGRDFHVHLYTN-----SIGIDERAL 127

Query: 134 S 134
           S
Sbjct: 128 S 128


>gi|217959681|ref|YP_002338233.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH187]
 gi|217066262|gb|ACJ80512.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH187]
          Length = 337

 Score = 38.5 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 14/89 (15%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C        D+  +Q       + D++  L       G  + R   LTGGE
Sbjct: 22  DRCNFRCTYCMPAEVFGADYAFLQEEF--LLSFDEIERLARLFISMGVNKIR---LTGGE 76

Query: 95  PLLQVDVP-LIQAL-NKRGFE-IAVETNG 120
           PLL+ D+  LI  L    G + I + TNG
Sbjct: 77  PLLRKDLSQLIARLTKLEGLKDIGLTTNG 105


>gi|115374760|ref|ZP_01462036.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368237|gb|EAU67196.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 328

 Score = 38.5 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 15/99 (15%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VP 102
             +C  C ++  G +     R +V ++A+ I           R   L+GGEP L      
Sbjct: 6   PLRCTHCYSE-SGRRPAVARREDVLRIAEEIIRV------NPRDVELSGGEPFLAPGWEE 58

Query: 103 LIQALNKRGFEIAVETNG-------TIEPPQGIDWICVS 134
            +Q L+  G  + + T+G              +  +CVS
Sbjct: 59  AVQRLSGAGIAVNLYTSGWSMDMALAKRLAGTVSRVCVS 97


>gi|58039087|ref|YP_191051.1| hypothetical protein GOX0617 [Gluconobacter oxydans 621H]
 gi|58001501|gb|AAW60395.1| Hypothetical protein GOX0617 [Gluconobacter oxydans 621H]
          Length = 397

 Score = 38.5 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 82  EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140
           E       + GGEPLL  ++P +++ L  R   + + TNG +   + +D    SP    D
Sbjct: 70  EAGAPVIAIAGGEPLLHKEMPQIVKGLIGRKKYVYLCTNG-LLLEKKLDDYEPSPFFSWD 128

Query: 141 LKIKG 145
           + + G
Sbjct: 129 VHLDG 133


>gi|317486932|ref|ZP_07945742.1| glycyl-radical enzyme activating family protein [Bilophila
           wadsworthia 3_1_6]
 gi|316921807|gb|EFV43083.1| glycyl-radical enzyme activating family protein [Bilophila
           wadsworthia 3_1_6]
          Length = 299

 Score = 38.5 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 14/102 (13%)

Query: 26  FCR-FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           F R FS C +  G   ++       C T         G  Y+ D +  +I +        
Sbjct: 78  FLRDFSRC-VGCGACAEQ-------CPT---TASSMSGREYDADAIMKVIRKDASFFSNS 126

Query: 85  GRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
           G     +GGE  +Q    + L++A    G    ++T G  +P
Sbjct: 127 GGGVTFSGGECTMQGAFLMELVEACLNEGLHTCIDTCGQTDP 168


>gi|317153677|ref|YP_004121725.1| Radical SAM domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943928|gb|ADU62979.1| Radical SAM domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 356

 Score = 38.5 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 21/84 (25%)

Query: 31  GCNLWSGREQDRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           GCN            +CR+C    D+  +G           D++ +++++    G K   
Sbjct: 40  GCN-----------HRCRYCAYRADSLQLGKDMRISDSIPRDRMLEIVDDIIAMGVKG-- 86

Query: 87  YCVLTGG-EPLLQVDVPLIQALNK 109
               +GG EPL      L+  L+K
Sbjct: 87  -VTFSGGGEPLFYPH--LVDVLHK 107


>gi|255657240|ref|ZP_05402649.1| putative pyruvate formate-lyase 3 activating enzyme [Clostridium
           difficile QCD-23m63]
 gi|296451920|ref|ZP_06893636.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           NAP08]
 gi|296879687|ref|ZP_06903662.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           NAP07]
 gi|296259234|gb|EFH06113.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           NAP08]
 gi|296429276|gb|EFH15148.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           NAP07]
          Length = 302

 Score = 38.5 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 32  CN----LWSGREQDRLSAQCRFCDT--DFVGIQGTK--GGRYNVDQLADLIEEQWITGEK 83
           C          +      +C FC+T  D+      +  G  Y+V  L   I++  I  E+
Sbjct: 64  CPHKAIYKGETKICLDQDKCEFCETCLDYCVNNAREIVGQEYSVRDLVKEIDKDRIFYEE 123

Query: 84  EGRYCVLTGGEPLLQVDV---PLIQALNKRGFEIAVETNG 120
            G    L+GGE + Q       +I     +G  +A++T G
Sbjct: 124 SGGGVTLSGGEVMAQDMDFICGVINMCKSKGIHVAIDTCG 163


>gi|329904141|ref|ZP_08273687.1| Transcriptional regulator [Oxalobacteraceae bacterium IMCC9480]
 gi|327548124|gb|EGF32841.1| Transcriptional regulator [Oxalobacteraceae bacterium IMCC9480]
          Length = 404

 Score = 38.5 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 41/126 (32%), Gaps = 26/126 (20%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-----LADLIEEQWITGEKE 84
             CNL            C +C     G    K     + +     LA+ I E     +  
Sbjct: 26  QRCNL-----------DCTYCYVYNRGDDSWKSRPPVISERVLLRLAERINEHCRRHQLS 74

Query: 85  GRYCVLTGGEPLL------QVDVPLI-QALNKRGFEIAVETNGTIEPPQGIDWIC---VS 134
                L GGEPLL      Q  + L+   ++       ++TNG +     ID +    VS
Sbjct: 75  SFTIELHGGEPLLIGKRKMQALLTLLRSRIDAAHVRFTMQTNGLLLDSAWIDLLAQHQVS 134

Query: 135 PKAGCD 140
                D
Sbjct: 135 FGISLD 140


>gi|302379500|ref|ZP_07267987.1| molybdenum cofactor biosynthesis protein A [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312845|gb|EFK94839.1| molybdenum cofactor biosynthesis protein A [Finegoldia magna
           ACS-171-V-Col3]
          Length = 315

 Score = 38.5 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D+ + +C++C  +             +D+   ++E     G K+ R   LTGGEPL++  
Sbjct: 18  DKCNLRCKYCMPEEGITHLNHDEILTIDETLKIVEVFKDLGIKKVR---LTGGEPLVRNG 74

Query: 101 -VPLIQALNKRGF-EIAVETN 119
            + L++ +   G  EI + TN
Sbjct: 75  ILDLVKGIKDMGIEEICMTTN 95


>gi|270001734|gb|EEZ98181.1| hypothetical protein TcasGA2_TC000610 [Tribolium castaneum]
          Length = 545

 Score = 38.5 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 26/114 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C++C     G++ +   +    D++  +       G  + R   L
Sbjct: 57  CNL-----------RCQYC-MPEEGVKLSPSEKILTSDEIIQISRLFVNEGVTKIR---L 101

Query: 91  TGGEPLL-QVDVPLIQALNK-RGFE-IAVETNG---TIEPP----QGIDWICVS 134
           TGGEP + +  + +I+ L K  G E +A+ TNG   T +       G+D + +S
Sbjct: 102 TGGEPTVRRDLLAIIENLKKIEGLETVAMTTNGLTLTRQLVALQRAGLDIVNIS 155


>gi|237752901|ref|ZP_04583381.1| MoaA/NifB/PqqE family protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375168|gb|EEO25259.1| MoaA/NifB/PqqE family protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 305

 Score = 38.5 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDV-PLI 104
           C +C+ +    Q +     +VD++ + I+ Q +          +T  GEP L   +  L+
Sbjct: 32  CLYCELEGKKAQESMREVLSVDEILEAIK-QGLEKFPNVESLTITANGEPTLYPHLYELM 90

Query: 105 QALNKR--GFEIAVETNGTIEPPQGIDWICV 133
             L       +  + TNG +     +   C+
Sbjct: 91  LRLEDIKGDKQTLLLTNGALLWDLCVARACL 121


>gi|226334870|ref|YP_002784542.1| putative molybdenum cofactor biosynthesis protein [Rhodococcus
           opacus B4]
 gi|226246090|dbj|BAH56190.1| putative molybdenum cofactor biosynthesis protein [Rhodococcus
           opacus B4]
          Length = 305

 Score = 38.5 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 19/107 (17%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           GR+ VF     CNL            C +C          KG  Y  DQL D        
Sbjct: 6   GRLRVFL-TEQCNL-----------ACFYC----HNEGQPKGSAYLSDQLFDAAVSMSRQ 49

Query: 81  GEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ 126
            E E    +L+GGEPLL    + L++A++      ++ TNG +  P 
Sbjct: 50  PEVEK--VILSGGEPLLHPRVLELVEAVSPNVARSSLITNGLLLTPS 94


>gi|209543671|ref|YP_002275900.1| Radical SAM domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531348|gb|ACI51285.1| Radical SAM domain protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 333

 Score = 38.5 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 20/90 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C                ++ L   ++     G         T
Sbjct: 44  CNL-----------ACGYC-----NEFDDFSAPVPLEVLKARVDHLAKLGTAS---ITFT 84

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           GGEPLL  D+  +++     G  +   TNG
Sbjct: 85  GGEPLLHPDLDKIVRIARDHGMIVTTITNG 114


>gi|94991832|ref|YP_599931.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
           MGAS2096]
 gi|94545340|gb|ABF35387.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
           MGAS2096]
          Length = 287

 Score = 38.5 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 68/180 (37%), Gaps = 40/180 (22%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        +F    GC L           +C++C   DT          
Sbjct: 40  TESFGSVDGPGIRFI----IF--LQGCKL-----------RCQYCHNPDT-----WEMAN 77

Query: 63  GRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQAL----NKRGFEIAV 116
            ++ +  + D+++E        G+     ++GGE +LQ+D   I AL     K G    +
Sbjct: 78  QQFKIRTVNDVLKEALQYKHFWGKKGGITVSGGEAMLQID--FITALFIEAKKLGIHTTL 135

Query: 117 ETNG-TIEPPQGIDWI-----CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
           +T G T  P      +      V+     DLK    ++ K+V  Q N +   +  +  ++
Sbjct: 136 DTCGFTYRPTPEYHQVLDNLLAVTDLILLDLKEIDEKQHKIVTRQPNKNILQFARYLSDK 195


>gi|320642894|gb|EFX12095.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           O157:H- str. 493-89]
 gi|320648351|gb|EFX17006.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           O157:H- str. H 2687]
          Length = 215

 Score = 38.5 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101
           +C +C   DT         G    V+ L   +          G     +GGE +LQ +  
Sbjct: 2   RCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFV 57

Query: 102 -PLIQALNKRGFEIAVETNG 120
               +A  K G    ++TNG
Sbjct: 58  RDWFRACKKEGIHTCLDTNG 77


>gi|85813914|emb|CAF31543.1| conserved hypothetical protein; putative fortimicin production
           protein [Micromonospora olivasterospora]
          Length = 379

 Score = 38.5 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 15/106 (14%)

Query: 32  CNLWSGREQDRLSAQCR-FCDT--DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           CNL           +C  + D+  +   +   K  + +++    L++E    G +E  Y 
Sbjct: 28  CNLTC--------RECWMYGDSAAESTWLPEVKRDQMSIEMWTALVDEL-AAGNREKVYL 78

Query: 89  VLTGGEPLLQVD-VPLIQALNKR--GFEIAVETNGTIEPPQGIDWI 131
            + GGEPL+  D V LI+    R     + + TN T+ P    D +
Sbjct: 79  TIMGGEPLMHRDVVELIRIAKTRMPNSNLDMSTNATLLPRFADDIV 124


>gi|148259102|ref|YP_001233229.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acidiphilium
           cryptum JF-5]
 gi|326402254|ref|YP_004282335.1| coenzyme PQQ synthesis protein E [Acidiphilium multivorum AIU301]
 gi|146400783|gb|ABQ29310.1| coenzyme PQQ biosynthesis protein E [Acidiphilium cryptum JF-5]
 gi|325049115|dbj|BAJ79453.1| coenzyme PQQ synthesis protein E [Acidiphilium multivorum AIU301]
          Length = 373

 Score = 38.5 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R   +C +C       +       + +    +I E    G  +G +   +GGEP+++ D+
Sbjct: 29  RCPLKCPYCSNPLAMDRA--RDEMSTETWKRVISEAAALGALQGHF---SGGEPMVRDDL 83

Query: 102 -PLIQALNKRGFEIAVETNGTIEPPQGID 129
             L++  ++ G    + T+  +   + +D
Sbjct: 84  VELVRHAHREGLYTNLITSAVLLDKRRMD 112


>gi|332158633|ref|YP_004423912.1| co-factor modifying protein [Pyrococcus sp. NA2]
 gi|331034096|gb|AEC51908.1| co-factor modifying protein [Pyrococcus sp. NA2]
          Length = 238

 Score = 38.5 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 31/108 (28%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           F GCN            +C +C    V  + T+      ++    ++  WI G       
Sbjct: 19  FDGCN-----------WKCSYC----VWREVTRWSLCLPEERRKELDMLWINGRVRYLRL 63

Query: 89  --VLT-------------GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
             V++             GGEP L  ++ PL++AL++ G ++ + TNG
Sbjct: 64  EEVVSMLKRNSVKFAFFGGGEPTLDPELKPLLRALSREGIKVWLVTNG 111


>gi|322367966|ref|ZP_08042535.1| Wyosine base formation domain protein [Haladaptatus paucihalophilus
           DX253]
 gi|320551982|gb|EFW93627.1| Wyosine base formation domain protein [Haladaptatus paucihalophilus
           DX253]
          Length = 346

 Score = 38.5 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 72  DLIEEQWITGEKEGRYCVLT-GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
           D +  +      E R+  ++  GEP L   +P LI+A + R     + +NGT  
Sbjct: 126 DEVPREIFEESMEPRHVAISLDGEPTLYPYLPELIEAFHDRDITTFLVSNGTNP 179


>gi|312795399|ref|YP_004028321.1| Oxygen-independent coproporphyrinogen-III oxidase [Burkholderia
           rhizoxinica HKI 454]
 gi|312167174|emb|CBW74177.1| Oxygen-independent coproporphyrinogen-III oxidase (EC 1.3.99.22)
           [Burkholderia rhizoxinica HKI 454]
          Length = 426

 Score = 38.5 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 15/107 (14%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGR 86
            L           +C +CD +     +G    ++   +  D +             +   
Sbjct: 45  PLSLYVHFPWCVHKCPYCDFNSHAFTRGPNDAQFPETEYLDALRADLEAALPLIWGRPVH 104

Query: 87  YCVLTGGEPLL---QVDVPLIQAL-----NKRGFEIAVETN-GTIEP 124
              + GG P L   Q    L+  L          EI +E N GT E 
Sbjct: 105 TVFIGGGTPSLLSAQAIDRLLSDLRALLPLDADAEITLEANPGTFEA 151


>gi|293394872|ref|ZP_06639162.1| cfr family radical SAM enzyme [Serratia odorifera DSM 4582]
 gi|291422623|gb|EFE95862.1| cfr family radical SAM enzyme [Serratia odorifera DSM 4582]
          Length = 398

 Score = 38.5 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I  Q +TG++     V+ G
Sbjct: 132 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAQKVTGQRPITNVVMMG 191

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 192 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 242


>gi|170289717|ref|YP_001736533.1| radical SAM domain-containing protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170173797|gb|ACB06850.1| Radical SAM domain protein [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 477

 Score = 38.5 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 10/95 (10%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           +W   +  R +  C  C   +            N+++   ++ +    G         +G
Sbjct: 117 VWDFTK--RCNLSCLHC---YANASYLPPPDELNLEERLSVLSQLDEAGVAA---ISFSG 168

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           GEPL+  D   + +   + G  I++ TNGT+  P+
Sbjct: 169 GEPLIVPDFWEVARRAAQAGMYISIATNGTLIKPE 203


>gi|212704139|ref|ZP_03312267.1| hypothetical protein DESPIG_02194 [Desulfovibrio piger ATCC 29098]
 gi|212672499|gb|EEB32982.1| hypothetical protein DESPIG_02194 [Desulfovibrio piger ATCC 29098]
          Length = 321

 Score = 38.5 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 10/105 (9%)

Query: 30  SGCNLWSGREQD----RLSAQCRFCDTDFVGIQGT----KGGRYNVDQLADLIEEQWITG 81
             C   +  E+D    R  ++C  C         +     G  Y V+++  ++ +     
Sbjct: 86  QVCRYGAVTEKDQVIGRDLSRCTGCGQCAAQCPTSASSLSGREYEVEEVMRVVRKDASFF 145

Query: 82  EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
              G     +GGE  +Q D  + L+ A       + ++T G  +P
Sbjct: 146 GNSGGGVTFSGGECTMQPDFLMALVDACQDEALHVCIDTCGQTDP 190


>gi|94987948|ref|YP_596049.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
           MGAS9429]
 gi|94541456|gb|ABF31505.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
           MGAS9429]
          Length = 287

 Score = 38.5 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 36/178 (20%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        +F    GC L           +C++C   DT  +    +K 
Sbjct: 40  TESFGSVDGPGIRFI----IF--LQGCKL-----------RCQYCHNPDTWEMETNNSKI 82

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVET 118
              N D L + ++ +   G+K G    ++GGE +LQ+D   I AL     K G    ++T
Sbjct: 83  RTVN-DVLKEALQYKHFWGKKGG--ITVSGGEAMLQID--FITALFIEAKKLGIHTTLDT 137

Query: 119 NG-TIEPPQGIDWI-----CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
            G T  P      +      V+     DLK    ++ K+V  Q N +   +  +  ++
Sbjct: 138 CGFTYRPTPEYHQVLDNLLAVTDLILLDLKEIDEKQHKIVTRQPNKNILQFARYLSDK 195


>gi|312602669|ref|YP_004022514.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           rhizoxinica HKI 454]
 gi|312169983|emb|CBW76995.1| Molybdenum cofactor biosynthesis protein A [Burkholderia
           rhizoxinica HKI 454]
          Length = 373

 Score = 38.5 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 22/120 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +V +  + ++E             +
Sbjct: 38  CNL-----------ACSGCGKIDY--PDPILNQRVSVAEALEAVDECG------APVVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
            GGEPLL  D+P +++ +  R   + + TN  +   + I     SP     + + G +E+
Sbjct: 79  AGGEPLLHKDMPEIVKGIIARRKFVYLCTN-ALLLEKKIKDYQPSPFFVWSIHLDGDREM 137


>gi|225011453|ref|ZP_03701891.1| molybdenum cofactor biosynthesis protein A [Flavobacteria bacterium
           MS024-2A]
 gi|225003956|gb|EEG41928.1| molybdenum cofactor biosynthesis protein A [Flavobacteria bacterium
           MS024-2A]
          Length = 335

 Score = 38.5 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       +R + +C +C          K    N +++  L       G  + R   LTG
Sbjct: 17  NYLRISLTERCNLRCSYCMPQEGVTLTPKPQLMNAEEIFSLAALFVKNGVNKIR---LTG 73

Query: 93  GEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGI 128
           GEPL++ D P ++  L++   ++++ T+      + I
Sbjct: 74  GEPLVRKDFPDILSRLSQLPVQLSL-TSNAFSIDRHI 109


>gi|310824873|ref|YP_003957231.1| radical sam domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309397945|gb|ADO75404.1| Radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 339

 Score = 38.5 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 15/99 (15%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VP 102
             +C  C ++  G +     R +V ++A+ I           R   L+GGEP L      
Sbjct: 17  PLRCTHCYSE-SGRRPAVARREDVLRIAEEIIRV------NPRDVELSGGEPFLAPGWEE 69

Query: 103 LIQALNKRGFEIAVETNG-------TIEPPQGIDWICVS 134
            +Q L+  G  + + T+G              +  +CVS
Sbjct: 70  AVQRLSGAGIAVNLYTSGWSMDMALAKRLAGTVSRVCVS 108


>gi|302344325|ref|YP_003808854.1| molybdenum cofactor biosynthesis protein A [Desulfarculus baarsii
           DSM 2075]
 gi|301640938|gb|ADK86260.1| molybdenum cofactor biosynthesis protein A [Desulfarculus baarsii
           DSM 2075]
          Length = 348

 Score = 38.5 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +C +C     G+        ++  L ++     +          LTG
Sbjct: 26  NYLRVSLTDRCNFRCIYC-MPPGGVDKIPHD--DILSLEEIARVARVAVAMGVDKIRLTG 82

Query: 93  GEPLLQVDVP-LIQAL 107
           GEPLL+ ++P L+  L
Sbjct: 83  GEPLLRRNLPVLLDKL 98


>gi|240169459|ref|ZP_04748118.1| Fe-S oxidoreductase [Mycobacterium kansasii ATCC 12478]
          Length = 491

 Score = 38.5 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 27/135 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
             GCN             C +C   +   +     R + D++ +L++   +         
Sbjct: 114 TGGCN-----------IACTYC---YDYDKTRFRARLDDDRIHELVD--VLIARNSHLSI 157

Query: 89  VLTGGEPLL-QVDVPLI-----QALNKRGFEI--AVETNGTIEPPQGIDWI---CVSPKA 137
              GGEPLL    +        +     G  +  +++TNG    P  +D++     S   
Sbjct: 158 AFHGGEPLLRWDQIKRTVSYARERAAAVGHLVSFSIQTNGLFFTPAVVDYLERESFSVGI 217

Query: 138 GCDLKIKGGQELKLV 152
             D   +    L++V
Sbjct: 218 SLDGSDEEANSLRVV 232


>gi|169825127|ref|YP_001692738.1| molybdenum cofactor biosynthesis protein A [Finegoldia magna ATCC
           29328]
 gi|167831932|dbj|BAG08848.1| molybdenum cofactor biosynthesis protein A [Finegoldia magna ATCC
           29328]
          Length = 315

 Score = 38.5 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D+ + +C++C  +             +D+   ++E     G K+ R   LTGGEPL++  
Sbjct: 18  DKCNLRCKYCMPEEGITHLNHDEILTIDETLKIVEVFKDLGIKKVR---LTGGEPLVRNG 74

Query: 101 -VPLIQALNKRGF-EIAVETN 119
            + L++ +   G  EI + TN
Sbjct: 75  ILDLVKGIKDMGIEEICMTTN 95


>gi|146295693|ref|YP_001179464.1| arylsulfatase regulator (Fe-S oxidoreductase)-like protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409269|gb|ABP66273.1| Arylsulfatase regulator (Fe-S oxidoreductase)-like protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 312

 Score = 38.5 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 14/73 (19%)

Query: 74  IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE-----TNGTIEPPQGI 128
           I              +++GGEP L+ D+  +  L +    I++E     TNG   P + I
Sbjct: 5   IYSIKQLKNYGLNKIIISGGEPTLRDDLEFL--LREIKENISIEYVCLITNGIHFPEKLI 62

Query: 129 -------DWICVS 134
                  D + VS
Sbjct: 63  NVVKKYVDEVSVS 75


>gi|161519801|ref|YP_001583228.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Burkholderia multivorans ATCC 17616]
 gi|189354020|ref|YP_001949647.1| radical SAM domain protein [Burkholderia multivorans ATCC 17616]
 gi|160343851|gb|ABX16936.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Burkholderia multivorans ATCC 17616]
 gi|189338042|dbj|BAG47111.1| radical SAM domain protein [Burkholderia multivorans ATCC 17616]
          Length = 386

 Score = 38.5 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 23/142 (16%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +V++    ++E             +
Sbjct: 38  CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
            GGEPLL  ++P +++ + KR   + + TN  +   + +D    SP     + + G +E+
Sbjct: 79  AGGEPLLHNEMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYQPSPYFVWSVHLDGDKEM 137

Query: 150 -KLVFPQVNVSPENYIGFDFER 170
                 Q  V  +        +
Sbjct: 138 HDHSVSQDGVYDKAVAAIKEAK 159


>gi|310643276|ref|YP_003948034.1| gtp cyclohydrolase subunit moaa [Paenibacillus polymyxa SC2]
 gi|309248226|gb|ADO57793.1| GTP cyclohydrolase subunit MoaA [Paenibacillus polymyxa SC2]
          Length = 338

 Score = 38.5 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 24/94 (25%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D DF  +   K    + +++  L E     G K+ R   LTGG
Sbjct: 23  DRCNFRCSYCMPKEIFGD-DFAFL--PKSECLSFEEIHRLTELFVGLGVKKIR---LTGG 76

Query: 94  EPLLQVDVP-LIQAL------NKRGFEIAVETNG 120
           EPL++ ++P L+  +         G      TNG
Sbjct: 77  EPLMRPNLPDLVSRILSINGVEDMGLT----TNG 106


>gi|297153942|gb|ADI03654.1| putative radical activating enzyme [Streptomyces bingchenggensis
           BCW-1]
          Length = 214

 Score = 38.5 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 19/83 (22%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            GC L           +C+ C      +    G   +V +LAD     W+          
Sbjct: 28  QGCPL-----------RCQGC-VAAETLPFEGGTSRSVAELAD-----WLCRLDGIEGVT 70

Query: 90  LTGGEPLLQ--VDVPLIQALNKR 110
            +GGEP  Q      L+ A+ +R
Sbjct: 71  FSGGEPFSQAGALAELLDAVRER 93


>gi|258593150|emb|CBE69461.1| Putative heme D1 biosynthesis protein (nirJ) involved in nitrite
           reductase biosynthesis [NC10 bacterium 'Dutch sediment']
          Length = 406

 Score = 38.5 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 14/111 (12%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            +       R +  C  C +               D+   LI +       +    +L+G
Sbjct: 34  PVVIWNLTRRCNLHCLHCYSQ--SQDRAYADELTTDEGKRLIADLT---GYKIPMLILSG 88

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTI--------EPPQGIDWICVS 134
           G+PL + D+  L +     G   A+ TNGT+            GI ++ VS
Sbjct: 89  GDPLFREDLYTLAEHAQDLGLRCALSTNGTLIDAAAARRLRRLGITYVGVS 139


>gi|195542013|gb|ACF98210.1| putative Fe-S oxidoreductase [uncultured bacterium 1114]
          Length = 355

 Score = 38.5 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 16/101 (15%)

Query: 47  CRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG-EPLLQV-D 100
           C FC    D   +G    +  R + +++ +++ +    G +       +GG EPL+    
Sbjct: 44  CWFCAYRSDAVSLGNGMNERDRISREKMIEIVADLAAMGVEA---VTFSGGGEPLIYPHL 100

Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGID-------WICVS 134
           V +I  L   G  I   TNG++   +  D       W+ VS
Sbjct: 101 VEVIDRLAAGGIRIGALTNGSMLKGKVADAFARHGTWLRVS 141


>gi|212225057|ref|YP_002308293.1| tRNA-modifying enzyme [Thermococcus onnurineus NA1]
 gi|212010014|gb|ACJ17396.1| hypothetical protein, conserved [Thermococcus onnurineus NA1]
          Length = 328

 Score = 38.5 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
           GEP+L   +  L++  +KRGF   + TNGT  
Sbjct: 142 GEPMLYPYMGDLVEEFHKRGFTTFIVTNGTAP 173


>gi|145588575|ref|YP_001155172.1| molybdenum cofactor biosynthesis protein A [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046981|gb|ABP33608.1| GTP cyclohydrolase subunit MoaA [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 371

 Score = 38.5 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 18/95 (18%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D ++  +        + +++  L       G ++ R   LTGGE
Sbjct: 48  DRCNFRCTYCMPKEVFDQNYPYLAHQ--ELLSFEEITRLTSIFSSLGVEKIR---LTGGE 102

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTI 122
           PLL+ ++  LI+ L K      +  ++ + TNG+I
Sbjct: 103 PLLRKNLEILIEMLAKIHTTVGKPLDLTLTTNGSI 137


>gi|90416699|ref|ZP_01224629.1| molybdenum cofactor biosynthesis protein A [marine gamma
           proteobacterium HTCC2207]
 gi|90331452|gb|EAS46688.1| molybdenum cofactor biosynthesis protein A [marine gamma
           proteobacterium HTCC2207]
          Length = 336

 Score = 38.5 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 7/87 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C    +  + T   +  +  L +L +      E   R   LTGGEPL++ D
Sbjct: 29  DRCNLRCTYC----MAEEMTFLPKQQILSLEELRDAATAFVELGIRKIRLTGGEPLIRRD 84

Query: 101 -VPLIQALNKR-GF-EIAVETNGTIEP 124
            + L+ +L+   G  E+ + TNG + P
Sbjct: 85  ILKLVSSLSALPGLDELTMTTNGLLLP 111


>gi|254421688|ref|ZP_05035406.1| radical SAM domain protein [Synechococcus sp. PCC 7335]
 gi|196189177|gb|EDX84141.1| radical SAM domain protein [Synechococcus sp. PCC 7335]
          Length = 423

 Score = 38.5 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 15/125 (12%)

Query: 47  CRFC-DTDFVGIQGTKGGRYNVDQLADLIEE--QWITGEKEGRYCVLTGGEPLLQVDV-P 102
           C FC D     I   K G  ++D L   ++E  Q+   +    + +   GEPL+   +  
Sbjct: 79  CEFCPD----AIMERKRGHMDIDLLEKALDEIAQYDLAKIVAFHLM---GEPLIYPHIFE 131

Query: 103 LIQALNKRGFEIAVETNGT--IEPPQGIDWICVS--PKAGCDLKIKGGQELKLVFPQVNV 158
            I+    R   + + TNG+     P+ I+ +  S  PK    L+        +     N+
Sbjct: 132 AIEMAIARQLNLHLTTNGSTFHIRPEHIEKLVASGIPKVTISLQTPDPDTFIIRGAPPNL 191

Query: 159 SPENY 163
            PE Y
Sbjct: 192 KPEQY 196


>gi|262199661|ref|YP_003270870.1| radical SAM protein [Haliangium ochraceum DSM 14365]
 gi|262083008|gb|ACY18977.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365]
          Length = 366

 Score = 38.5 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 62/174 (35%), Gaps = 30/174 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +        +G + G  + +++  ++++    G ++  +   T
Sbjct: 40  CNLRCFM--------CEY-------WKGRRRGELSTEEVTRVLDDLRALGCEKVHF---T 81

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
           GGE  ++ D + L+      G    + TNGT+   + I       KA  ++ ++    L 
Sbjct: 82  GGELFMRRDVLTLVAHAADLGMRTNLTTNGTLLTRETI-------KALLEIPVRSVT-LS 133

Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE--NTNLAISYCFQNPKWRLSV 202
           +  P   +             + + +D         T + ++       +R S+
Sbjct: 134 IDAPVARIHDTVRGKKGAHHKTTRSIDRLLRWRKSKTRVRVNTVLSRKNYR-SL 186


>gi|225569142|ref|ZP_03778167.1| hypothetical protein CLOHYLEM_05222 [Clostridium hylemonae DSM
           15053]
 gi|225161941|gb|EEG74560.1| hypothetical protein CLOHYLEM_05222 [Clostridium hylemonae DSM
           15053]
          Length = 302

 Score = 38.5 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 42  RLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           +L   C  C D+  + ++   G  Y V +L   + +  +  E+ G    L+GGE ++   
Sbjct: 80  KLCTGCGTCVDSCNLNLREVAGKEYTVSELVKELRKDEMFYEESGGGVTLSGGEVMMADM 139

Query: 101 ---VPLIQALNKRGFEIAVETNG 120
                L++ L++ G  +A++T G
Sbjct: 140 DYVEELVKRLDRMGISVAIDTCG 162


>gi|182680062|ref|YP_001834208.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635945|gb|ACB96719.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 382

 Score = 38.5 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 19/89 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C                R +++     ++E            V+ 
Sbjct: 38  CNLAC--------AGCG----KIDYPDEILNQRLSLEDSLAAVDECG------APVVVIA 79

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETN 119
           GGEPLL  D+P +++    +G  + V TN
Sbjct: 80  GGEPLLHRDLPAIVEGAMAKGKYVTVCTN 108


>gi|116512687|ref|YP_811594.1| pyruvate-formate lyase activating enzyme [Lactococcus lactis subsp.
           cremoris SK11]
 gi|125624774|ref|YP_001033257.1| pyruvate-formate lyase activating enzyme [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|116108341|gb|ABJ73481.1| Pyruvate-formate lyase-activating enzyme [Lactococcus lactis subsp.
           cremoris SK11]
 gi|124493582|emb|CAL98567.1| pyruvate-formate lyase activating enzyme [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071574|gb|ADJ60974.1| pyruvate formate-lyase activating enzyme [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 263

 Score = 38.5 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 34/122 (27%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +C++C   DT    ++ 
Sbjct: 18  TESFGSVDGPG---------VRFIIFMQGC-----------RMRCKYCHNPDT--WALKS 55

Query: 60  TKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAV 116
            K  +  V+ + D         GEK G    ++GGE LLQ+D  + L +     G    +
Sbjct: 56  DKATKRTVEDVMDEALRFRGFWGEKGG--ITVSGGEALLQIDFVLALFKYAKSLGIHTTL 113

Query: 117 ET 118
           +T
Sbjct: 114 DT 115


>gi|70725785|ref|YP_252699.1| hypothetical protein SH0784 [Staphylococcus haemolyticus JCSC1435]
 gi|82592973|sp|Q4L8D2|MOAA_STAHJ RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|68446509|dbj|BAE04093.1| moaA [Staphylococcus haemolyticus JCSC1435]
          Length = 340

 Score = 38.5 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 22/93 (23%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D D+V +   K      +++  + +     G K+ R   +TGG
Sbjct: 22  DRCNFRCDYCMPKEIFGD-DYVFL--PKDELLTFEEMVRIAKVYAELGVKKLR---ITGG 75

Query: 94  EPLLQVDV-PLIQALNKRGFEIAVE-----TNG 120
           EPLL+ ++  LI  LN+      +E     TNG
Sbjct: 76  EPLLRRNLYQLIAELNQID---GIEDIGMTTNG 105


>gi|255525534|ref|ZP_05392470.1| glycyl-radical enzyme activating protein family [Clostridium
           carboxidivorans P7]
 gi|255510802|gb|EET87106.1| glycyl-radical enzyme activating protein family [Clostridium
           carboxidivorans P7]
          Length = 312

 Score = 38.1 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 57/150 (38%)

Query: 24  AVFCRFSGCNL---WSGREQDRLSAQ--------CRF----------C--DTDFVGIQGT 60
           +VF  F+GC L   W    +  +  +        C++          C  D+      G 
Sbjct: 24  SVF--FTGCPLQCKWCANPESWIKKKHIMVAENVCKWKNGCRACINVCSHDSIKFSEDGK 81

Query: 61  KG---------------------------GRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
            G                             Y VD+L  +++  +     +G     TGG
Sbjct: 82  LGISWDTCEECETFDCVNICPNNALKQCVKEYTVDELMTILKRDFNNWGSDGG-VTFTGG 140

Query: 94  EPLLQVDVPLIQALN---KRGFEIAVETNG 120
           +PL+  +  L++ L          A+ET+G
Sbjct: 141 DPLMHHEF-LVEVLKKCYDSQIHKAIETSG 169


>gi|302874064|ref|YP_003842697.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307689682|ref|ZP_07632128.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302576921|gb|ADL50933.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
          Length = 298

 Score = 38.1 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 47/165 (28%), Gaps = 57/165 (34%)

Query: 22  RVAVFCRFSGCNL---WSGREQDRLS--------AQCRFC-------------------- 50
           R+ VF    GCN+   W                  +C  C                    
Sbjct: 21  RLVVF--LQGCNVKCKWCHSPHSWRKYSPVLLNKERCSLCGNCESVCENDVHRISNGIHT 78

Query: 51  -----------------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY--CVLT 91
                            D+     +G         Q++ L    +   +   +     L+
Sbjct: 79  LHIENCVSCGKCIEACMDSSLSSKKGPLFLPTIELQVSKLFSLIYPQLKLLKKIGGITLS 138

Query: 92  GGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134
           GGE LLQ      L++   + G   AVE++G +      ++  VS
Sbjct: 139 GGEALLQHKAARELLKLCKEEGIHTAVESSGFLPLE---NYKSVS 180


>gi|237746020|ref|ZP_04576500.1| molybdenum cofactor biosynthesis protein A [Oxalobacter formigenes
           HOxBLS]
 gi|229377371|gb|EEO27462.1| molybdenum cofactor biosynthesis protein A [Oxalobacter formigenes
           HOxBLS]
          Length = 370

 Score = 38.1 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 29/151 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  F+          + +++A +       G ++ R   LTG
Sbjct: 50  DRCNFRCVYCMPKQVFGKDFRFI----PHADMLSFEEIARIARLFVSLGVEKIR---LTG 102

Query: 93  GEPLLQVDVP-LIQALNKR----GFEI--AVETNGTIEP-------PQGIDWICVSPKAG 138
           GEPLL+  V  L+  L       G  +   + TNG++           G+  I VS  A 
Sbjct: 103 GEPLLRKHVEKLVAQLAGLKTPDGRRVDLTLTTNGSMLAKKAQSLFDAGLRRITVSLDAL 162

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
            D   +   ++      V    E  +   F 
Sbjct: 163 DDPVFRKMNDVGFRVADVLDGIETALSAGFS 193


>gi|242278349|ref|YP_002990478.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242121243|gb|ACS78939.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 349

 Score = 38.1 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 14/110 (12%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG- 92
           L      ++ +  C FC   +  ++  +    + + L D I +    G K   Y   +G 
Sbjct: 31  LIEISPTNKCNHGCLFC--AYDYLERKEPRFIDTEILYDNIYQLQNLGTKALFY---SGE 85

Query: 93  GEPLLQVDVP-LIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134
           GEPLL   +P  ++ ++    + A+ TNG++       +    + WI VS
Sbjct: 86  GEPLLHKGLPNFVEKISYLQLDQALNTNGSLLKGRCMEQILPHMSWIRVS 135


>gi|20092131|ref|NP_618206.1| arylsulfatase regulator [Methanosarcina acetivorans C2A]
 gi|19917353|gb|AAM06686.1| arylsulfatase regulator [Methanosarcina acetivorans C2A]
          Length = 380

 Score = 38.1 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 28/98 (28%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GC            A C +C          K    +++ + +++E               
Sbjct: 12  GCP-----------ANCNYC-----WSSEEKSPIMSIETIKEVVE---WLKVFRQDSVTF 52

Query: 91  T--GGEPLLQ------VDVPLI-QALNKRGFEIAVETN 119
           T  GGEPLL         +PL+ + L+ R    A++TN
Sbjct: 53  TFHGGEPLLAGVDFYREALPLLAEGLSPRNIAFAIQTN 90


>gi|313902877|ref|ZP_07836273.1| Radical SAM domain protein [Thermaerobacter subterraneus DSM 13965]
 gi|313466812|gb|EFR62330.1| Radical SAM domain protein [Thermaerobacter subterraneus DSM 13965]
          Length = 479

 Score = 38.1 bits (88), Expect = 0.70,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 11/91 (12%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG-EPLLQVD 100
           R + +C FC  DF  +   +  + + ++   + +E    G       +  GG EP L  D
Sbjct: 133 RCNQRCSFCFLDFGLMAQQEKRKLSCEEWLAITDELIHAGVN----VINIGGMEPFL--D 186

Query: 101 VPL-IQALNKR---GFEIAVETNGTIEPPQG 127
           + L I  L K    G  + V TNG+I     
Sbjct: 187 IELTISILEKAYENGCIVGVITNGSISLSSE 217


>gi|304315862|ref|YP_003851007.1| radical SAM protein [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302777364|gb|ADL67923.1| Radical SAM domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 452

 Score = 38.1 bits (88), Expect = 0.70,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 19/107 (17%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCN             C +C    +  +     R  VD   D I E  + GEK   Y  L
Sbjct: 100 GCNF-----------SCIYCYERGIPTKKDLITREAVDAFFDDINE-RLKGEKVKPYITL 147

Query: 91  TGGEPLLQVDVP------LIQALNKRGFEIAVETNGTIEPPQGIDWI 131
            GGEP +  DV       +++   + G+EIA  TNG     + ID +
Sbjct: 148 FGGEPFIDTDVQKEIIDYIVEKSKEYGYEIAAVTNG-YNLLEYIDIL 193


>gi|114327751|ref|YP_744908.1| lysine 2,3-aminomutase [Granulibacter bethesdensis CGDNIH1]
 gi|114315925|gb|ABI61985.1| lysine 2,3-aminomutase [Granulibacter bethesdensis CGDNIH1]
          Length = 362

 Score = 38.1 bits (88), Expect = 0.70,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 47  CRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           CRFC   F     G  GG  + +QL   I   W+ G  + R  +LTGG+PL+
Sbjct: 124 CRFC---FRREHVGPDGGVLSEEQL--RIALDWLAGHPQIREVILTGGDPLM 170


>gi|319443027|ref|ZP_07992183.1| molybdenum cofactor biosynthesis protein A [Corynebacterium
           variabile DSM 44702]
          Length = 371

 Score = 38.1 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 16/97 (16%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE----KEGRYCVLTGGEPL 96
           D+ + +C +C      +          D+L    E   I          R    TGGEPL
Sbjct: 49  DKCNLRCTYC------MPAEGMAWLQKDRLLTAEEAVRIADLGVRIFGVRDVRFTGGEPL 102

Query: 97  ----LQVDVPLIQALNKRGFEIAVETNGTIEPPQGID 129
               L   +  ++ L+     I++ TNG I   + ID
Sbjct: 103 VRHDLADIIAGVRRLHPE-IPISITTNG-IGLDKRID 137


>gi|290473883|ref|YP_003466757.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus bovienii
           SS-2004]
 gi|289173190|emb|CBJ79963.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus bovienii
           SS-2004]
          Length = 246

 Score = 38.1 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 56/184 (30%), Gaps = 44/184 (23%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF  F GC             +C +C   DT         G    V++L           
Sbjct: 25  VF--FQGC-----------LMRCLYCHNRDT----WNTHGGTTVTVEELIKEATTYRHFM 67

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVS 134
              G     +GGE +LQ +      +A +       ++TNG +        + +D     
Sbjct: 68  NASGGGVTASGGEAILQAEFVRDWFRACHAENIHTCLDTNGFVRRYDLIIDELLD----- 122

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
                DL +   ++L     Q  +   N+   +F  +          + N    I Y   
Sbjct: 123 ---DTDLVMLDLKQLDDEIHQKLIGVSNHRTLEFAHY--------LAKLNQKTWIRYVVV 171

Query: 195 NPKW 198
            P W
Sbjct: 172 -PGW 174


>gi|210621731|ref|ZP_03292780.1| hypothetical protein CLOHIR_00725 [Clostridium hiranonis DSM 13275]
 gi|210154613|gb|EEA85619.1| hypothetical protein CLOHIR_00725 [Clostridium hiranonis DSM 13275]
          Length = 303

 Score = 38.1 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 7/81 (8%)

Query: 47  CRFCDT--DFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101
           C  C T  D+      +  G  Y V +L  LIE+  +  E+ G    L+GGE ++Q    
Sbjct: 83  CELCSTCLDYCVNNAREIVGDEYTVKELLKLIEKDRMFYEESGGGVTLSGGEVMVQDIDF 142

Query: 102 --PLIQALNKRGFEIAVETNG 120
              L +    +G ++A++T G
Sbjct: 143 ICELARGCRNKGIDVAIDTCG 163


>gi|18978436|ref|NP_579793.1| arylsulfatase regulatory protein, putative [Pyrococcus furiosus DSM
           3638]
 gi|18894280|gb|AAL82188.1| arylsulfatase regulatory protein, putative [Pyrococcus furiosus DSM
           3638]
          Length = 472

 Score = 38.1 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 51/168 (30%), Gaps = 41/168 (24%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN---VDQLADLIEEQWITGEKEGRYC 88
           CNL           +C +C   + G   +KGG      ++ +           +K     
Sbjct: 99  CNL-----------RCPYC---YEGDIKSKGGLLTREKIETILTFASAHAQGDKKPTISV 144

Query: 89  VLTGGEPL---------LQVDVPLIQALNKRGFEIAVETNGTIEPPQGID---------- 129
              GGEPL         LQ    + +    R +     TNGT+     +D          
Sbjct: 145 SFYGGEPLLNWKGCEYTLQRLEEMKENKEIRDYSAGFVTNGTLINEDIVDAINNYNVYSM 204

Query: 130 WICVS-PKAGCD---LKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
            I +  PK   D   +K  G      +   + +        +F   +L
Sbjct: 205 QITLDGPKEIHDKRRIKSNGEGTFDQIIENIKLLNRRIANKNF-HLAL 251


>gi|154685272|ref|YP_001420433.1| YfkA [Bacillus amyloliquefaciens FZB42]
 gi|154351123|gb|ABS73202.1| YfkA [Bacillus amyloliquefaciens FZB42]
          Length = 373

 Score = 38.1 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   ++E  +      R   +TGGEP+L +      
Sbjct: 45  RCEHCAVGYT-LQPKDPNALPIDLLLKRLDEIPLL-----RSISITGGEPMLSLKSVKEY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
            VPL++  ++RG    + +N T++ 
Sbjct: 99  VVPLLKYAHERGVRTQINSNLTLDI 123


>gi|21229386|ref|NP_635308.1| transcriptional regulator [Methanosarcina mazei Go1]
 gi|20907976|gb|AAM32980.1| transcriptional regulator [Methanosarcina mazei Go1]
          Length = 379

 Score = 38.1 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 28/98 (28%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GC            A C +C          K    +++ + +++E               
Sbjct: 12  GCP-----------ANCNYC-----WSSEEKSPIMSIETIKEVVE---WLKIFRQDSVTF 52

Query: 91  T--GGEPLLQ------VDVPLI-QALNKRGFEIAVETN 119
           T  GGEPLL         +PL+ + L+ R    A++TN
Sbjct: 53  TFHGGEPLLAGEKFYREALPLLAEGLSPRNIAFAIQTN 90


>gi|312879492|ref|ZP_07739292.1| glycyl-radical enzyme activating protein family [Aminomonas
           paucivorans DSM 12260]
 gi|310782783|gb|EFQ23181.1| glycyl-radical enzyme activating protein family [Aminomonas
           paucivorans DSM 12260]
          Length = 301

 Score = 38.1 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119
           G    V +L     +  +  ++ G     +GGEPL+Q +  L  ++A    GF  AV+T 
Sbjct: 103 GRTLTVPELVAEARKDELFYDQSGGGVTFSGGEPLMQPEFLLEVLEACGAAGFHRAVDTC 162

Query: 120 GTIEPPQGI 128
           G   P + I
Sbjct: 163 G-FAPEETI 170


>gi|213027682|ref|ZP_03342129.1| hypothetical protein Salmonelentericaenterica_37148 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 102

 Score = 38.1 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 46  QCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101
           +C +C   DT         G    V+ L   +          G     +GGE +LQ +  
Sbjct: 2   RCLYCHNRDT----WDTHGGKEITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFV 57

Query: 102 -PLIQALNKRGFEIAVETNG 120
               +A  K G    ++TNG
Sbjct: 58  RDWFRACKKEGIHTCLDTNG 77


>gi|258545316|ref|ZP_05705550.1| molybdenum cofactor biosynthesis protein A [Cardiobacterium hominis
           ATCC 15826]
 gi|258519419|gb|EEV88278.1| molybdenum cofactor biosynthesis protein A [Cardiobacterium hominis
           ATCC 15826]
          Length = 323

 Score = 38.1 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 61/173 (35%), Gaps = 28/173 (16%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           D  + +C +C        G +G G  +   LA++                LTGGEP L+ 
Sbjct: 19  DFCNYRCVYC-----LPDGYQGCGSADELSLAEIRTLVAAFAACGTEKIRLTGGEPTLRA 73

Query: 100 DVPLIQALNKR--GFE-IAVETNGTI-------EPPQGIDWICV---SPKAGCDLKIKGG 146
           D+  I  +     G + +A+ TNG             G+D I +   S +A    ++ G 
Sbjct: 74  DIADIIRICASTPGIQKVALTTNGHRLAEHYPALLDAGLDQINLSVDSFRAATFQRLTGK 133

Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL---AISYCFQNP 196
             L    P +  + +  +   +    L        +  T L    ++Y    P
Sbjct: 134 NHL----PALLATIDALLARGYHHLKL--NALLMRDSATELYEDTLAYLKTRP 180


>gi|240172941|ref|ZP_04751599.1| radical SAM domain-containing protein [Mycobacterium kansasii ATCC
           12478]
          Length = 514

 Score = 38.1 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 16/91 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   F            +  +   ++++           +L+
Sbjct: 122 CNL-----------RCPTC---FADSSPDLRHVVAIGDVLANVDQRLERENGRLDVLMLS 167

Query: 92  GGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
           GGEP L   +P L+  L+ R    I + TNG
Sbjct: 168 GGEPSLHPQLPELLAELSARPITRILLNTNG 198


>gi|239635993|ref|ZP_04677010.1| molybdenum cofactor biosynthesis protein A [Staphylococcus warneri
           L37603]
 gi|239598458|gb|EEQ80938.1| molybdenum cofactor biosynthesis protein A [Staphylococcus warneri
           L37603]
          Length = 341

 Score = 38.1 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 41  DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C   +  G       +  +    +++    +  +   +   +TGGEPLL+ 
Sbjct: 23  DRCNFRCDYCMPKEIFGDDFVFLPKEELLTFEEMVRISKLYAQLGVKKIRITGGEPLLRR 82

Query: 100 DV-PLIQALNKR-GFE-IAVETNG 120
           ++  LI+ LN+  G E I + TNG
Sbjct: 83  NLYQLIEQLNQIDGIEDIGLTTNG 106


>gi|256423142|ref|YP_003123795.1| molybdenum cofactor biosynthesis protein A [Chitinophaga pinensis
           DSM 2588]
 gi|256038050|gb|ACU61594.1| molybdenum cofactor biosynthesis protein A [Chitinophaga pinensis
           DSM 2588]
          Length = 326

 Score = 38.1 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 15/91 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C         T   R  + Q  ++     I      R   LT
Sbjct: 21  CNL-----------RCFYC-MPEEDYDFTPASR--LMQADEIATLAGIFTANGVRKIRLT 66

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
           GGEPL++ D   +I +L++   E+ + TNG 
Sbjct: 67  GGEPLVRKDAAKIILSLSRLPVELTMTTNGA 97


>gi|226940140|ref|YP_002795213.1| MoaA2 [Laribacter hongkongensis HLHK9]
 gi|226715066|gb|ACO74204.1| MoaA2 [Laribacter hongkongensis HLHK9]
          Length = 324

 Score = 38.1 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 13/62 (20%)

Query: 41 DRLSAQCRFCDTDFVGIQGTKG-----GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
          DR   +C +C       +G KG          D+++ ++      G +  R   LTGGEP
Sbjct: 19 DRCDLRCTYC-----LPKGFKGFEEPRNWLTFDEISRVVAAFGRMGTRRIR---LTGGEP 70

Query: 96 LL 97
          LL
Sbjct: 71 LL 72


>gi|296109325|ref|YP_003616274.1| molybdenum cofactor biosynthesis protein A [Methanocaldococcus
           infernus ME]
 gi|295434139|gb|ADG13310.1| molybdenum cofactor biosynthesis protein A [Methanocaldococcus
           infernus ME]
          Length = 294

 Score = 38.1 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 26/112 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C         +       +    +++     G ++     ++
Sbjct: 20  CNL-----------RCFYC---HKEGHKSSERYLTPEDFEKIVKTAMKFGIEK---VKIS 62

Query: 92  GGEPLLQVDV-PLIQALNKRGFE-IAVETNGTIEPP-------QGIDWICVS 134
           GGEPLL+ D+  +++ +   G + +++ TNGT+           G+D I +S
Sbjct: 63  GGEPLLREDIVEIVRRIKNLGIKDLSLTTNGTLLKDLAYELKEAGLDRINIS 114


>gi|227824433|ref|ZP_03989265.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904932|gb|EEH90850.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 379

 Score = 38.1 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 47  CRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
           C +CD   + G  G    RY    + ++           G    + GG P L     L  
Sbjct: 21  CSYCDFISYQGQDGAARARYVKALIREIRSYDAPLPVSRGATVYVGGGTPSLLSLEELAA 80

Query: 106 ---ALNKRGF-----EIAVETN-GTIE 123
              AL ++G+     E+  E N GT++
Sbjct: 81  IFHALKEKGYLHSPREVTFEANPGTVD 107


>gi|121535158|ref|ZP_01666974.1| molybdenum cofactor biosynthesis protein A [Thermosinus
           carboxydivorans Nor1]
 gi|121306267|gb|EAX47193.1| molybdenum cofactor biosynthesis protein A [Thermosinus
           carboxydivorans Nor1]
          Length = 324

 Score = 38.1 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C    +   G K     ++    +++    +  +       LTGGEPL++ 
Sbjct: 18  DRCNFRCAYC----MPPDGVKLLDHADILAYEEILYLIKVFNKYGVNKIRLTGGEPLVRK 73

Query: 100 DV-PLIQALNKRGF--EIAVETNGTIEPPQGID 129
            +   I+AL+  G   ++++ TNG++      D
Sbjct: 74  GIVDFIRALSSLGIIDDLSLTTNGSLLADMAED 106


>gi|189347396|ref|YP_001943925.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
 gi|189341543|gb|ACD90946.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
          Length = 376

 Score = 38.1 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 36/113 (31%), Gaps = 26/113 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR C   +              +      E     E      VL 
Sbjct: 21  CNL-----------RCRHC--YYYSSDAETPTELETAEWLRFFREL---NECSVLRVVLA 64

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGT---------IEPPQGIDWICVS 134
           GGEP ++ D   LI  + K      + +NGT         +   +  D++ VS
Sbjct: 65  GGEPFMREDFRELIDGIVKNRMRFGILSNGTLVTDAIASFLAATRRCDYVQVS 117


>gi|291531854|emb|CBK97439.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Eubacterium siraeum
           70/3]
          Length = 457

 Score = 38.1 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 29/113 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-----NVDQLADLIEEQWITGEKEGR 86
           CNL           +C++C   F       G R         +  D + +   +  +E  
Sbjct: 107 CNL-----------RCKYC---FAQTGDFGGDRMLMKPETGKRAMDFLIKH--SANRENL 150

Query: 87  YCVLTGGEPLLQVDVPL--------IQALNKRGFEIAVETNGTIEPPQGIDWI 131
                GGEPL+  D  +        I+  + + F   + TNG +   + ID+I
Sbjct: 151 EVDFFGGEPLMAWDTVVETVKYARSIEKQHGKNFRFTITTNGMLLDDEKIDYI 203


>gi|73668723|ref|YP_304738.1| molybdenum cofactor biosynthesis protein A [Methanosarcina barkeri
           str. Fusaro]
 gi|72395885|gb|AAZ70158.1| GTP cyclohydrolase subunit MoaA [Methanosarcina barkeri str.
           Fusaro]
          Length = 332

 Score = 38.1 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 21/111 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL      +   A C  C        G  G     + +  +I+E    G  + ++   +
Sbjct: 40  CNLSCMYCHN-EGADCCTC--------GPIGHEMKPELICGIIKEAEKFGVNKIKF---S 87

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134
           GGEPL + D   I A      E++  TNG        T++   G+D + VS
Sbjct: 88  GGEPLFRKDFEEILACLPPLKEVSATTNGILLEKRARTLKA-AGLDRVNVS 137


>gi|219667305|ref|YP_002457740.1| glycyl-radical enzyme activating protein family [Desulfitobacterium
           hafniense DCB-2]
 gi|219537565|gb|ACL19304.1| glycyl-radical enzyme activating protein family [Desulfitobacterium
           hafniense DCB-2]
          Length = 299

 Score = 38.1 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 10/101 (9%)

Query: 30  SGCN--LWSGREQDRLSAQ--CRFCDTDFVGIQGTK----GGRYNVDQLADLIEEQWITG 81
           + C   ++  RE      +  C FC         T     G   + D++ ++I +     
Sbjct: 62  AKCPQQVFEIREGKLDITRQKCDFCGICVRECSTTSLEISGENPDFDKIMEIILQDKSYY 121

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
           +  G    L+GGE L        ++  L       AVET+G
Sbjct: 122 DMSGGGVTLSGGEALAHRAFCRKILTLLKTENIHTAVETSG 162


>gi|189346542|ref|YP_001943071.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
 gi|189340689|gb|ACD90092.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
          Length = 345

 Score = 38.1 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 23/94 (24%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR+C   + G + + G   ++D     ++     G     +   T
Sbjct: 17  CNL-----------SCRYC---YEGGRRS-GEFMSLDTALCALDVAARRG--RPFHVQFT 59

Query: 92  GGEPLLQVD-----VPLIQALNKRGFEIAVETNG 120
           GGEPLL  D     +  I A        A++TNG
Sbjct: 60  GGEPLLAADLVFAVLEHIAA-EALPATTAIQTNG 92


>gi|158333639|ref|YP_001514811.1| pyruvate formate-lyase activating enzyme [Acaryochloris marina
           MBIC11017]
 gi|158303880|gb|ABW25497.1| pyruvate formate-lyase activating enzyme [Acaryochloris marina
           MBIC11017]
          Length = 270

 Score = 38.1 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 44/129 (34%), Gaps = 33/129 (25%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC L           +C +C   D        T G    V+ L   I+      
Sbjct: 52  VFM--QGCPL-----------RCLYCHNPD----CRDVTGGQVTTVEALIAEIQRYRSYM 94

Query: 82  EKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQG-----------I 128
           +  G    ++GGEPLLQ +    L++     G   A++T+G  +               +
Sbjct: 95  QASGGGVTVSGGEPLLQPEFVAELMRQCQALGIHTALDTSGFSDLTSAQRVLQYTDLVLL 154

Query: 129 DWICVSPKA 137
           D     PK 
Sbjct: 155 DIKSYDPKR 163


>gi|148264594|ref|YP_001231300.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146398094|gb|ABQ26727.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 216

 Score = 38.1 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 16/94 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            + CN+  G         C  C       +  KG     + +A+++         + ++ 
Sbjct: 6   TTKCNMRCGHC-------CYAC-------EPGKGEHMPFEVIAEVLARWGKKILDDNQWI 51

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
           V+ GGEP L  D   +I      G  + V TNG+
Sbjct: 52  VIGGGEPTLHPDFWKIISHALSYG-PVWVATNGS 84


>gi|317490229|ref|ZP_07948717.1| anaerobic ribonucleoside-triphosphate reductase activating
          protein [Eggerthella sp. 1_3_56FAA]
 gi|316910723|gb|EFV32344.1| anaerobic ribonucleoside-triphosphate reductase activating
          protein [Eggerthella sp. 1_3_56FAA]
          Length = 181

 Score = 38.1 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 19/75 (25%)

Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
          AVF    GC           S  C  C                V  +AD++ E       
Sbjct: 26 AVFV--QGC-----------SHGCPGC----HNPDSQPCAGGTVRAIADVVAEIAANKLV 68

Query: 84 EGRYCVLTGGEPLLQ 98
          +G    ++GGEP  Q
Sbjct: 69 QG--VTISGGEPFEQ 81


>gi|291532371|emb|CBL05484.1| Pyruvate-formate lyase-activating enzyme [Megamonas hypermegale
           ART12/1]
          Length = 136

 Score = 38.1 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 32/103 (31%), Gaps = 24/103 (23%)

Query: 15  GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI 74
           GEG    R  +F    GC              C  C           G   + D L   I
Sbjct: 17  GEGF---RFTIF--TQGC-----------YHNCPQCHNPQT-HDVNGGHEVDTDDLLSQI 59

Query: 75  EEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
            E  +           +GGEP LQ      L + ++KRG  I 
Sbjct: 60  CENPLLNG-----VTFSGGEPFLQAKPLAQLAKEVHKRGLNIT 97


>gi|264677776|ref|YP_003277682.1| molybdenum cofactor biosynthesis protein A [Comamonas testosteroni
           CNB-2]
 gi|262208288|gb|ACY32386.1| molybdenum cofactor biosynthesis protein A [Comamonas testosteroni
           CNB-2]
          Length = 342

 Score = 38.1 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 54/153 (35%), Gaps = 25/153 (16%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D ++  +  +     ++    ++     +      R   LTGGE
Sbjct: 10  DRCNFRCNYCMPKEVFDKNYQYLPHS-----SLLSFEEITRLARLFVAHGVRKLRLTGGE 64

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ ++  LI  L +      +  ++ + TN ++           G++ + VS     D
Sbjct: 65  PLLRKNIEALIAQLAELRTPDGQPLDLTLTTNASLLARKARALKEAGLNRVTVSLDGLDD 124

Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
              +   ++      V    E           +
Sbjct: 125 AVFRRMNDVDFPVTDVLAGIEAAQTAGLSHIKV 157


>gi|222445702|ref|ZP_03608217.1| hypothetical protein METSMIALI_01343 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349749|ref|ZP_05975166.1| putative molybdenum cofactor biosynthesis protein A
           [Methanobrevibacter smithii DSM 2374]
 gi|222435267|gb|EEE42432.1| hypothetical protein METSMIALI_01343 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861704|gb|EFC94002.1| putative molybdenum cofactor biosynthesis protein A
           [Methanobrevibacter smithii DSM 2374]
          Length = 309

 Score = 38.1 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 8/87 (9%)

Query: 38  REQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
              ++ +  C +C               N D++  + E     G ++ R   ++GGEPL+
Sbjct: 20  TITNKCNENCLYC---HHDGMDDSQEEMNADEIYRICEIAKNIGVRKIR---ISGGEPLI 73

Query: 98  QVDV-PLIQALNKRGF-EIAVETNGTI 122
           + D+  ++  +    F +I++ +NGT+
Sbjct: 74  RKDIVEIVSKIASLDFDDISITSNGTL 100


>gi|254167443|ref|ZP_04874295.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|197623706|gb|EDY36269.1| radical SAM domain protein [Aciduliprofundum boonei T469]
          Length = 496

 Score = 38.1 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 29/134 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDF-VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL                 T +    + T   +Y   Q+ D ++E  +           
Sbjct: 126 CNLKCKHCYANA--------TPYPAPDELTLEQKY---QVVDQLDEAGVAA------ISF 168

Query: 91  TGGEPLLQVDVPLIQA-LNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
           +GGEPL   D   +      +GF + V TNGT+          +S K    LK  G   +
Sbjct: 169 SGGEPLTNKDFLKVARYAKSKGFYLTVATNGTL----------ISEKMARKLKEVGIGYV 218

Query: 150 KLVFPQVNVSPENY 163
           ++     N    + 
Sbjct: 219 EISLDGPNAEIHDE 232


>gi|291446592|ref|ZP_06585982.1| heme d1 biosynthesis protein NirJ [Streptomyces roseosporus NRRL
           15998]
 gi|291349539|gb|EFE76443.1| heme d1 biosynthesis protein NirJ [Streptomyces roseosporus NRRL
           15998]
          Length = 329

 Score = 38.1 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI-- 104
           C  C   F G +      + VD+ ADL+    +  +       L GGEP +  ++  +  
Sbjct: 55  CLHC---FHGKRLQYADAFTVDEAADLL--TLMRDQYGTAAVTLLGGEPFVHRNLAQVVR 109

Query: 105 QALNKRGFEIAVETNG 120
            A  + G  + + TNG
Sbjct: 110 HAKEELGLRVEICTNG 125


>gi|260887738|ref|ZP_05899001.1| glutamate 5-kinase [Selenomonas sputigena ATCC 35185]
 gi|260862525|gb|EEX77025.1| glutamate 5-kinase [Selenomonas sputigena ATCC 35185]
          Length = 250

 Score = 38.1 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 22/101 (21%)

Query: 31  GCNLWSGREQDRLSAQCRFCD--TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           GCNL           +C FC   T  +    ++       +LA L  +            
Sbjct: 44  GCNL-----------RCPFCQNYTISMTDGQSETQDVTPAELAALAHDL-SRRPHGNIGV 91

Query: 89  VLTGGEPLLQ-----VDVPLIQALNKRGFEIAVETNGTIEP 124
             T  EPLL         PL   L++ G  + + TNGTI P
Sbjct: 92  AFTYNEPLLSYEFIMDVAPL---LHEAGLFVVLVTNGTIAP 129


>gi|258541496|ref|YP_003186929.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO
           3283-01]
 gi|329115088|ref|ZP_08243843.1| Hopanoid Biosynthesis Associated Radical SAM Protein HpnH
           [Acetobacter pomorum DM001]
 gi|256632574|dbj|BAH98549.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635631|dbj|BAI01600.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638686|dbj|BAI04648.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641740|dbj|BAI07695.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644795|dbj|BAI10743.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647850|dbj|BAI13791.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650903|dbj|BAI16837.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653894|dbj|BAI19821.1| iron-sulfur (Fe-S) oxidoreductase [Acetobacter pasteurianus IFO
           3283-12]
 gi|326695531|gb|EGE47217.1| Hopanoid Biosynthesis Associated Radical SAM Protein HpnH
           [Acetobacter pomorum DM001]
          Length = 403

 Score = 38.1 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 81  GEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139
            E       + GGEPLL  ++P +I+ L  R   + + TN  +   + +D    SP    
Sbjct: 69  AEAGAPVVAVAGGEPLLHKEMPQIIRGLIARKKYVYLCTN-ALLLEKKMDEYEPSPFFSW 127

Query: 140 DLKIKG 145
           D+ + G
Sbjct: 128 DVHLDG 133


>gi|239943115|ref|ZP_04695052.1| radical SAM domain-containing protein [Streptomyces roseosporus
           NRRL 15998]
 gi|239989573|ref|ZP_04710237.1| radical SAM domain-containing protein [Streptomyces roseosporus
           NRRL 11379]
          Length = 300

 Score = 38.1 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI-- 104
           C  C   F G +      + VD+ ADL+    +  +       L GGEP +  ++  +  
Sbjct: 26  CLHC---FHGKRLQYADAFTVDEAADLL--TLMRDQYGTAAVTLLGGEPFVHRNLAQVVR 80

Query: 105 QALNKRGFEIAVETNG 120
            A  + G  + + TNG
Sbjct: 81  HAKEELGLRVEICTNG 96


>gi|197118770|ref|YP_002139197.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
 gi|197088130|gb|ACH39401.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
          Length = 446

 Score = 38.1 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 27/102 (26%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVL 90
           CNL            C +C       +  +GG Y  D  ADL+ E  +       +   L
Sbjct: 93  CNL-----------DCGYC-----YEREFRGGHYMSDATADLLVETLLRERISKEWDVTL 136

Query: 91  T--GGEPLLQVDV------PLIQALNKRG--FEIAVETNGTI 122
           +  GGEPLL  D+      PL+Q     G  +   + TNGT+
Sbjct: 137 SFYGGEPLLSQDLIRRISAPLLQGARNHGVRYGFNLVTNGTL 178


>gi|91203561|emb|CAJ71214.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 331

 Score = 38.1 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
                 +TGGEPL+  ++  +I  + K    + + TNG
Sbjct: 72  PTPVVTITGGEPLMHPEIDKIISGIIKEKRHVYLCTNG 109


>gi|229088329|ref|ZP_04220177.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock3-44]
 gi|228694989|gb|EEL48117.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock3-44]
          Length = 307

 Score = 38.1 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 13/85 (15%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+ ++P LI+ LNK  G E I +
Sbjct: 14  SNDKILSFDEIERVTRIFVSLGVRKLR---ITGGEPLLRKNLPELIERLNKIDGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVS 134
            TNG++      D        + VS
Sbjct: 71  TTNGSLLKKFAPDLYKAGLSRVTVS 95


>gi|268592553|ref|ZP_06126774.1| organic radical activating enzyme family protein [Providencia
           rettgeri DSM 1131]
 gi|291311965|gb|EFE52418.1| organic radical activating enzyme family protein [Providencia
           rettgeri DSM 1131]
          Length = 210

 Score = 38.1 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 33/104 (31%), Gaps = 35/104 (33%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC           S +C+ C   DT  V     K     V QL D I E     +   
Sbjct: 26  FQGC-----------SLRCKGCLSPDTWQV-----KDNSITVKQLLDQITEWLPFADG-- 67

Query: 86  RYCVLTGGEPLLQV--DVPL---IQALNKRGFEI-------AVE 117
               ++GGEP  Q      L   I+ L      +        +E
Sbjct: 68  --ITISGGEPFEQPEALSALMKGIKQLKDADILVYSGYQWEHIE 109


>gi|222086226|ref|YP_002544758.1| molybdenum cofactor biosynthesis protein A [Agrobacterium
           radiobacter K84]
 gi|221723674|gb|ACM26830.1| molybdenum cofactor biosynthesis protein A [Agrobacterium
           radiobacter K84]
          Length = 355

 Score = 38.1 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 14/89 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          K     +++L  L       G ++ R   LTGGEPL++ +
Sbjct: 44  DRCDFRCTYC-MSENMTFLPKKDLLTLEELNRLCSAFIAKGVRKIR---LTGGEPLVRKN 99

Query: 101 VPLIQALNKRGFEIA---VE-----TNGT 121
           +  +  + + G  +    +E     TNG+
Sbjct: 100 IMFL--VRELGKRVHTGELEELTLTTNGS 126


>gi|209549618|ref|YP_002281535.1| molybdenum cofactor biosynthesis protein A [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|226707377|sp|B5ZRM8|MOAA_RHILW RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|209535374|gb|ACI55309.1| molybdenum cofactor biosynthesis protein A [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 348

 Score = 38.1 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          K     +++L  L       G K+ R   LTGGEPL++ +
Sbjct: 38  DRCDFRCTYC-MAENMTFLPKKDLLTLEELDRLCSAFVAKGVKKIR---LTGGEPLVRKN 93

Query: 101 VP-LIQALNK---RGF-EIAVETNGT 121
           +  L++ L +    G  E+ + TNG+
Sbjct: 94  IMYLVRRLGEKIGAGLDEVTLTTNGS 119


>gi|148643466|ref|YP_001273979.1| molybdenum cofactor biosynthesis protein A [Methanobrevibacter
           smithii ATCC 35061]
 gi|89953725|gb|ABD83341.1| MoaA [Methanobrevibacter smithii]
 gi|148552483|gb|ABQ87611.1| molybdopterin cofactor biosynthesis protein A, MoaA
           [Methanobrevibacter smithii ATCC 35061]
          Length = 309

 Score = 38.1 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 8/87 (9%)

Query: 38  REQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
              ++ +  C +C               N D++  + E     G ++ R   ++GGEPL+
Sbjct: 20  TITNKCNENCLYC---HHDGMDDSQEEMNADEIYRICEIAKNIGVRKIR---ISGGEPLI 73

Query: 98  QVDV-PLIQALNKRGF-EIAVETNGTI 122
           + D+  ++  +    F +I++ +NGT+
Sbjct: 74  RKDIVEIVSKIASLDFDDISITSNGTL 100


>gi|325279342|ref|YP_004251884.1| Radical SAM domain-containing protein [Odoribacter splanchnicus DSM
           20712]
 gi|324311151|gb|ADY31704.1| Radical SAM domain protein [Odoribacter splanchnicus DSM 20712]
          Length = 355

 Score = 38.1 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 14/99 (14%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR C +D   I G        +     ++      +    + + T
Sbjct: 40  CNL-----------ACRHCGSDCKAISGQPD--MPKEDFLKALDNITPQVDPHRVFIIFT 86

Query: 92  GGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQGID 129
           GGEPL++ D+    +A  +R +   + TNG +   Q +D
Sbjct: 87  GGEPLMRKDLEECGRACYRREYPWGLVTNGLLLSRQRLD 125


>gi|254787119|ref|YP_003074548.1| molybdenum cofactor biosynthesis protein A [Teredinibacter turnerae
           T7901]
 gi|237684680|gb|ACR11944.1| molybdenum cofactor biosynthesis protein A [Teredinibacter turnerae
           T7901]
          Length = 327

 Score = 38.1 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 29/157 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN           +    CD+D            ++ ++A +     + G K+ R   +T
Sbjct: 26  CNFRCNYCLPDGYS----CDSD--------EPNLSIPEIAAVANAFALNGTKKIR---IT 70

Query: 92  GGEPLLQVDVPLIQALNK--RGFE-IAVETNG---TIEPP----QGIDWICVSPKAGCDL 141
           GGEP L+ D+  I  + K   G E +A+ +NG   T   P     G+D + +S  +    
Sbjct: 71  GGEPTLRKDLAEIIHVCKTTPGIESVALTSNGYRITRLLPSLVDAGLDQLNLSADSLHPA 130

Query: 142 K---IKGGQELKLVFPQVNVSPENYI-GFDFERFSLQ 174
           +   I G  +L+ V   ++++ E  +         LQ
Sbjct: 131 QFQLITGHDKLQEVLAGLDLALELGLSKVKLNVVLLQ 167


>gi|218885741|ref|YP_002435062.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756695|gb|ACL07594.1| Radical SAM domain protein [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 588

 Score = 38.1 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVET 118
            GG   + +L   +               L+GGEP L+ D+P L+ A+   G+  + + T
Sbjct: 167 PGGDPTLGELVARLAVLRPRAGDA--NIQLSGGEPTLRDDLPQLVTAVRGLGYPFVQLNT 224

Query: 119 NG 120
           NG
Sbjct: 225 NG 226


>gi|218778798|ref|YP_002430116.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218760182|gb|ACL02648.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 335

 Score = 38.1 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 18/94 (19%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            + CNL            CR C   ++  +       ++  +   ++     G       
Sbjct: 19  LTQCNL-----------SCRHC---YINPEQHGRQTLDIKTICKWLDAFSAQGADS--NV 62

Query: 89  VLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNG 120
           +  GGEP +  D+   I+  +  G++ I V+TNG
Sbjct: 63  IFLGGEPTMHPDLDQAIRHAHSTGYKSITVDTNG 96


>gi|120603171|ref|YP_967571.1| radical SAM domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|120563400|gb|ABM29144.1| Radical SAM domain protein [Desulfovibrio vulgaris DP4]
          Length = 405

 Score = 38.1 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           C L +       +  C+ C            G ++ D+   LI+     G       + T
Sbjct: 58  CKLIAWEVTRSCNLACKHC--RAEAHMEPYPGEFSTDEAKALIDTFPDVG---NPIIIFT 112

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127
           GG+P+++ DV  LI     +G    +  NGT+  P+ 
Sbjct: 113 GGDPMMRGDVYELIAYATDKGLRCVMSPNGTLITPEH 149


>gi|226355448|ref|YP_002785188.1| molybdenum cofactor biosynthesis protein A [Deinococcus deserti
           VCD115]
 gi|226317438|gb|ACO45434.1| putative molybdenum cofactor biosynthesis protein A [Deinococcus
           deserti VCD115]
          Length = 337

 Score = 38.1 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  FV     +    + +++  L     I G ++ R   LTG
Sbjct: 23  DRCNLRCTYCMPASVFGPDYAFV----PRSELLSFEEIERLTRLFLILGVRKLR---LTG 75

Query: 93  GEPLLQVDV-PLIQALNK-RGFE-IAVETNGTIEP-------PQGIDWICVS 134
           GEP L+ D+  LI  L +  G E +A+ TNG + P         G+  + VS
Sbjct: 76  GEPTLRRDLSDLIARLARLEGVEDLAMTTNGLLLPRLARELKSAGLRRVTVS 127


>gi|301059325|ref|ZP_07200252.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300446554|gb|EFK10392.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 375

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 17/100 (17%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL            CR C    V    +     +   L ++I +      +E     L
Sbjct: 31  GCNL-----------ACRHCWPQSVSGTESVASPVSTKTLKEIIRQWSRLDLEE---ICL 76

Query: 91  TGGEPLLQVD-VPLIQALNKRG--FEIAVETNGTIEPPQG 127
           TGGEPL     + +++   ++     + ++TN T+  P+ 
Sbjct: 77  TGGEPLTHPHWLEILRFACEQTEVKRVCLQTNATLLKPED 116


>gi|269125363|ref|YP_003298733.1| putative radical activating enzyme [Thermomonospora curvata DSM
           43183]
 gi|268310321|gb|ACY96695.1| putative radical activating enzyme [Thermomonospora curvata DSM
           43183]
          Length = 242

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 34/111 (30%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGT 60
           Y +     TL G G  AG         GC           + +C  C   DT     +  
Sbjct: 13  YPVT----TL-GPGTRAGIWT-----QGC-----------TLRCPGCLSRDT----WEPD 47

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNK 109
                 V+ +   +E      +       ++GGEP  Q      L++ ++ 
Sbjct: 48  PRKAVPVEAVLGWLESLPALPDG----VTISGGEPFQQPRALAALLRGIHA 94


>gi|113431887|emb|CAJ31889.1| putative oxydoreductase [Streptococcus thermophilus]
          Length = 399

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 20/97 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCV 89
           CNL            C +C   +             ++    ++I+E    G  +    +
Sbjct: 53  CNL-----------SCSYC---YADGGNYGMDNRIMDLTTADNIIQEIASKGVTQINRLI 98

Query: 90  LTGGEPLLQVDV--PLIQALNKRGFEIAVE--TNGTI 122
           L GGEP L +++    I+ L+     + +E  TNGT+
Sbjct: 99  LFGGEPFLNIELFIYFIEKLSTLLNVVKIETVTNGTV 135


>gi|86157248|ref|YP_464033.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773759|gb|ABC80596.1| GTP cyclohydrolase subunit MoaA [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 337

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 19/88 (21%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR + +C +C         +       D L    ++     +      R   LTGGEP L
Sbjct: 35  DRCNFRCTYC---------SPAEHEAPDALLQRPEIARLVRVFAGLGVRRVRLTGGEPTL 85

Query: 98  QVDVPLIQALNKRGFEIAVE-----TNG 120
           + D  L++ +        +E     TNG
Sbjct: 86  RKD--LVEIVADAAGTAGIEEVALTTNG 111


>gi|46579268|ref|YP_010076.1| radical SAM domain-containing protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448682|gb|AAS95335.1| radical SAM domain protein [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 367

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           C L +       +  C+ C            G ++ D+   LI+     G       + T
Sbjct: 20  CKLIAWEVTRSCNLACKHC--RAEAHMEPYPGEFSTDEAKALIDTFPDVG---NPIIIFT 74

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127
           GG+P+++ DV  LI     +G    +  NGT+  P+ 
Sbjct: 75  GGDPMMRGDVYELIAYATDKGLRCVMSPNGTLITPEH 111


>gi|332158225|ref|YP_004423504.1| arylsulfatase regulatory protein, putative [Pyrococcus sp. NA2]
 gi|331033688|gb|AEC51500.1| arylsulfatase regulatory protein, putative [Pyrococcus sp. NA2]
          Length = 472

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 51/168 (30%), Gaps = 41/168 (24%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN---VDQLADLIEEQWITGEKEGRYC 88
           CNL           +C +C   + G   +KGG      ++ +           +K     
Sbjct: 99  CNL-----------RCPYC---YEGDIKSKGGLLTREKIETILTFASAYAQGDKKPTISV 144

Query: 89  VLTGGEPL---------LQVDVPLIQALNKRGFEIAVETNGTIEPPQGID---------- 129
              GGEPL         LQ    + +    R +     TNGT+     +D          
Sbjct: 145 SFYGGEPLLNWKGCEYTLQRLEEMKENKEIRDYSAGFVTNGTLINEDIVDAINNYNVYSM 204

Query: 130 WICVS-PKAGCD---LKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
            I +  PK   D   +K  G      +   + +        +F   +L
Sbjct: 205 QITLDGPKEIHDKRRIKSNGEGTFDQIIENIKLLNRRIANKNF-HLAL 251


>gi|320539274|ref|ZP_08038944.1| putative 23S rRNA m(2)A2503 methyltransferase, SAM-dependen
           [Serratia symbiotica str. Tucson]
 gi|320030666|gb|EFW12675.1| putative 23S rRNA m(2)A2503 methyltransferase, SAM-dependen
           [Serratia symbiotica str. Tucson]
          Length = 399

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I    I GE+     V+ G
Sbjct: 133 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALKIAGERPITNVVMMG 192

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 193 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 243


>gi|295699173|ref|YP_003607066.1| radical SAM protein [Burkholderia sp. CCGE1002]
 gi|295438386|gb|ADG17555.1| Radical SAM domain protein [Burkholderia sp. CCGE1002]
          Length = 388

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 13/100 (13%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
             AV      C++      +  +A C FC   F   +   G R  +D   +      I  
Sbjct: 27  LPAV------CDV---SVTNVCNAACDFC--GFSREKNLAGPRRYLDP-DEFARALPILR 74

Query: 82  EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +  RY  L GGEPL+   +  L+ +  K G +  V TNG
Sbjct: 75  RRRIRYMTLQGGEPLVHPQIASLVASATKAGIQCGVITNG 114


>gi|322418838|ref|YP_004198061.1| Radical SAM domain-containing protein [Geobacter sp. M18]
 gi|320125225|gb|ADW12785.1| Radical SAM domain protein [Geobacter sp. M18]
          Length = 408

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 30/112 (26%)

Query: 21  GRVAVFC--RFSGCNLWSGREQDRLSAQCRFCDT--DFVGIQGTKGGRY-NVDQLADLIE 75
           G   +F   R   CN           A C +C T  D  G   T G  + + +  A+ + 
Sbjct: 76  GWSCLFINGR---CN-----------ASCFYCPTSQDDTGDPLTNGIPFASPEDYAEYVA 121

Query: 76  EQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKR-GFEIAV--ETNGTI 122
               TG        ++GGEPLL +D  L  + A+ +R G  + +   TNGT+
Sbjct: 122 LFGFTGA------SISGGEPLLTLDRTLAYLDAVRRRCGDSVHLWMYTNGTL 167


>gi|311233095|gb|ADP85949.1| Radical SAM domain protein [Desulfovibrio vulgaris RCH1]
          Length = 393

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           C L +       +  C+ C            G ++ D+   LI+     G       + T
Sbjct: 46  CKLIAWEVTRSCNLACKHC--RAEAHMEPYPGEFSTDEAKALIDTFPDVG---NPIIIFT 100

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127
           GG+P+++ DV  LI     +G    +  NGT+  P+ 
Sbjct: 101 GGDPMMRGDVYELIAYATDKGLRCVMSPNGTLITPEH 137


>gi|291287190|ref|YP_003504006.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884350|gb|ADD68050.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 355

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 17/95 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            S CNL     +                   +  G++ +++    I++     E      
Sbjct: 16  TSKCNLKCVHCRSSSGIH-------------SAVGKFTLEKSKKFIDDLI---EFANPVI 59

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           VLTGGEPL++ D+  +      +G  +A+ TNG++
Sbjct: 60  VLTGGEPLMREDIFDIASYGTSKGLRMAMATNGSL 94


>gi|254460688|ref|ZP_05074104.1| radical SAM domain protein [Rhodobacterales bacterium HTCC2083]
 gi|206677277|gb|EDZ41764.1| radical SAM domain protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 317

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119
             D++ D +++  I      R    TGGEP +  + + + +A  +RG+++ + TN
Sbjct: 67  TADEVRDYLDQLEIRNW-GVREIAFTGGEPFMNPEIIEITRASLERGYDVLILTN 120


>gi|152991532|ref|YP_001357254.1| heme d1 biosynthesis protein NirJ [Nitratiruptor sp. SB155-2]
 gi|151423393|dbj|BAF70897.1| heme d1 biosynthesis protein NirJ [Nitratiruptor sp. SB155-2]
          Length = 367

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 18/90 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C   +              ++   I +    G    ++ + +
Sbjct: 33  CNL-----------SCLHC---YSKAGLEAQDHLTTQKIMQTIPQLKKGG---VKFVIFS 75

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           GGEPL + D+  + +A+ + G    + TNG
Sbjct: 76  GGEPLTRKDIFDIAEAMREEGIATYLSTNG 105


>gi|119504213|ref|ZP_01626293.1| Molybdenum cofactor biosynthesis enzyme [marine gamma
           proteobacterium HTCC2080]
 gi|119459721|gb|EAW40816.1| Molybdenum cofactor biosynthesis enzyme [marine gamma
           proteobacterium HTCC2080]
          Length = 337

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 18/101 (17%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            R S          DR   +C +C    +  + T   R  V  L ++     +  +    
Sbjct: 20  VRLS--------VTDRCDFRCTYC----MAEEMTFLPRSKVLSLEEIARIAGVFVQLGVA 67

Query: 87  YCVLTGGEPLLQVDV-----PLIQALNKRGF-EIAVETNGT 121
              +TGGEPL++ DV      L   L + G  E+AV TNG+
Sbjct: 68  KLRVTGGEPLVRRDVTTLFQELGSLLAEDGLKELAVTTNGS 108


>gi|52549689|gb|AAU83538.1| coenzyme PQQ synthesis protein [uncultured archaeon GZfos30H9]
          Length = 317

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 18/96 (18%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY- 87
            +GC+             CR C   F   +   G   + ++     E+  +         
Sbjct: 22  LTGCDF-----------HCRGC---FRPARDGGGTLLSPEETLKRAEQACLKHYGTLPTK 67

Query: 88  CVLTGGEPLLQV--DVPLIQALNKRGF-EIAVETNG 120
            ++TGGEP L     + L++ L ++GF EI + +NG
Sbjct: 68  AMITGGEPTLDKEFLLTLVKGLEEKGFKEIILMSNG 103


>gi|116624999|ref|YP_827155.1| radical SAM domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228161|gb|ABJ86870.1| Radical SAM domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 545

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 11/98 (11%)

Query: 32  CNLWS---GREQDRLSAQCRF-CDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGR 86
           CNL +   G     L+ +C   C   F            + + +  +++         GR
Sbjct: 106 CNLHTSHTGLANVDLTNRCNLTCPVCFANANAAGYLYEPDFETVRKMLQALRDQKPVAGR 165

Query: 87  YCVLTGGEPLLQVDVPLIQAL---NKRGF-EIAVETNG 120
               +GGEP +      + AL    + GF    + TNG
Sbjct: 166 IVQFSGGEPTIYPR--FLDALRLAKEMGFSHTQIATNG 201


>gi|257456734|ref|ZP_05621922.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
 gi|257445865|gb|EEV20920.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
          Length = 287

 Score = 38.1 bits (88), Expect = 0.80,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 93  GEPLLQVDVPLIQA--LNKRGFEIAVETNGTIEPPQG 127
           GEPLL      I A  LN R   + +ET+G  E P  
Sbjct: 47  GEPLLHPHFAAIAAQILNHRNLSVLIETSGITEQPAD 83


>gi|237732895|ref|ZP_04563376.1| predicted protein [Mollicutes bacterium D7]
 gi|229384048|gb|EEO34139.1| predicted protein [Coprobacillus sp. D7]
          Length = 277

 Score = 38.1 bits (88), Expect = 0.80,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 10/79 (12%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPL 103
            C FC      ++G +  +  ++ L      + +  E       +TGGEP L  D  V L
Sbjct: 61  NCPFCLERQNPMEGNQDFKKQIESL------KGVLSEHPNARLTITGGEPGLYTDHVVAL 114

Query: 104 IQAL--NKRGFEIAVETNG 120
           +     + +   I+V T+G
Sbjct: 115 VDTFKQHSKNIFISVNTSG 133


>gi|170290235|ref|YP_001737051.1| radical SAM domain-containing protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174315|gb|ACB07368.1| Radical SAM domain protein [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 252

 Score = 38.1 bits (88), Expect = 0.80,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 38/178 (21%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQ----GTKGGRYNVDQLADLIEEQWITGEKEGR 86
           GCNL           +C FC   +            G Y+ +++   + +          
Sbjct: 45  GCNL-----------RCIFC---WSNTPRDNPAMGWGFYSPEEVYRNLVKIAERRGYRLL 90

Query: 87  YCVLTGGEPLL--QVDVPLIQALNKRG-FEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143
               +G EP +     + +++ + + G F+  +ETNGT+        + +  +    + +
Sbjct: 91  RV--SGNEPTICWDHLMKILELVEEDGRFKFILETNGTLIDEAKAYDLSMFRRVHVRVSL 148

Query: 144 KGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLS 201
           KG  E +              G   E F LQ      L    +LA      +P   LS
Sbjct: 149 KGACEEEFSL---------LTGARPEAFELQ------LNALKHLADQNVPAHPAVMLS 191


>gi|148265590|ref|YP_001232296.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146399090|gb|ABQ27723.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 365

 Score = 38.1 bits (88), Expect = 0.80,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 20/92 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD-QLADLIEEQWITGEKEGRYCVL 90
           CNL            CR C   +V   G+    +  +  L  L+EE    G    R+   
Sbjct: 29  CNLT-----------CRHC---WVEAGGSSAAAHVPERTLRRLMEEFVALGGAGIRF--- 71

Query: 91  TGGEPLLQVD-VPLIQALNKRG-FEIAVETNG 120
           TGGEPL     + L+Q     G  +++++TNG
Sbjct: 72  TGGEPLCHPAWLKLMQFGRSIGLCDVSIQTNG 103


>gi|328952248|ref|YP_004369582.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452572|gb|AEB08401.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 336

 Score = 38.1 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 16/100 (16%)

Query: 45  AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDV-P 102
           A+C +C       + T    +    L+           K+     L G GEP L  D   
Sbjct: 27  ARCAYC--PHTVFRST----WTSRHLSLTTFRNLAPDLKKVNLVFLQGWGEPFLHPDFFH 80

Query: 103 LIQALNKRGFEIAVETNGTIE--------PPQGIDWICVS 134
            +    + G  +   TNGT+            GID +  S
Sbjct: 81  FVSLAKEAGCRVGATTNGTLLTGENINRVVESGIDLLAFS 120


>gi|221200637|ref|ZP_03573678.1| radical SAM domain protein [Burkholderia multivorans CGD2M]
 gi|221208465|ref|ZP_03581467.1| radical SAM domain protein [Burkholderia multivorans CGD2]
 gi|221210406|ref|ZP_03583386.1| radical SAM domain protein [Burkholderia multivorans CGD1]
 gi|221169362|gb|EEE01829.1| radical SAM domain protein [Burkholderia multivorans CGD1]
 gi|221171653|gb|EEE04098.1| radical SAM domain protein [Burkholderia multivorans CGD2]
 gi|221179209|gb|EEE11615.1| radical SAM domain protein [Burkholderia multivorans CGD2M]
          Length = 386

 Score = 38.1 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 22/120 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +V++    ++E             +
Sbjct: 38  CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
            GGEPLL  ++P +++ + KR   + + TN  +   + +D    SP     + + G +E+
Sbjct: 79  AGGEPLLHKEMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYQPSPYFVWSVHLDGDKEM 137


>gi|210635394|ref|ZP_03298518.1| hypothetical protein COLSTE_02449 [Collinsella stercoris DSM 13279]
 gi|210158414|gb|EEA89385.1| hypothetical protein COLSTE_02449 [Collinsella stercoris DSM 13279]
          Length = 410

 Score = 38.1 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 25/112 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C             R     L +L        +      V++
Sbjct: 89  CNL-----------SCVGC-----YSADCNRNRAADPSLENLCHAIAALAQLGVTRMVVS 132

Query: 92  GGEPLLQVDVP-LIQALNKRGFE-IAVETNGTI-------EPPQGIDWICVS 134
           GGEP L+ D+P +++   ++G E IAV TNGT             +D I VS
Sbjct: 133 GGEPFLRRDLPDIVRNAREQGMESIAVLTNGTRCSDKVLARLAGNVDVISVS 184


>gi|149376005|ref|ZP_01893771.1| molybdenum cofactor synthesis-like protein [Marinobacter algicola
           DG893]
 gi|149359642|gb|EDM48100.1| molybdenum cofactor synthesis-like protein [Marinobacter algicola
           DG893]
          Length = 330

 Score = 38.1 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR   +C +C    +  + T   R  V  L ++ +              LTG
Sbjct: 15  NYVRLSVTDRCDFRCVYC----MAEEMTFLPRQQVLTLEEIAQVAKTFVSLGTEKIRLTG 70

Query: 93  GEPLLQVD-VPLIQALNKRGFE-IAVETNGTIEP 124
           GEPL++   + L++ +   G    A+ TNG+  P
Sbjct: 71  GEPLVRRGILELVKEIGTLGLRDFAMTTNGSQLP 104


>gi|15674526|ref|NP_268700.1| putative pyruvate formate-lyase activating protein [Streptococcus
           pyogenes M1 GAS]
 gi|21909813|ref|NP_664081.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
           pyogenes MGAS315]
 gi|28896494|ref|NP_802844.1| pyruvate-formate lyase activating enzyme [Streptococcus pyogenes
           SSI-1]
 gi|13621630|gb|AAK33421.1| putative pyruvate-formate lyase activating enzyme [Streptococcus
           pyogenes M1 GAS]
 gi|21903999|gb|AAM78884.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
           pyogenes MGAS315]
 gi|28811748|dbj|BAC64677.1| putative pyruvate-formate lyase activating enzyme [Streptococcus
           pyogenes SSI-1]
          Length = 263

 Score = 38.1 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 36/178 (20%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        +F    GC L           +C++C   DT  +    +K 
Sbjct: 16  TESFGSVDGPGIRFI----IF--LQGCKL-----------RCQYCHNPDTWEMETNNSKI 58

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVET 118
              N D L + ++ +   G+K G    ++GGE +LQ+D   I AL     K G    ++T
Sbjct: 59  RTVN-DVLKEALQYKHFWGKKGG--ITVSGGEAMLQID--FITALFIEAKKLGIHTTLDT 113

Query: 119 NG-TIEPPQGIDWI-----CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
            G T  P      +      V+     DLK    ++ K+V  Q N +   +  +  ++
Sbjct: 114 CGFTYRPTPEYHQVLDNLLAVTDLILLDLKEIDEKQHKIVTRQPNKNILQFARYLSDK 171


>gi|332180043|gb|AEE15731.1| (Formate-C-acetyltransferase)-activating enzyme [Treponema
           brennaborense DSM 12168]
          Length = 258

 Score = 38.1 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 27/109 (24%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFC----DTDFV-------GIQGTKGGRYNVDQLAD 72
            VF    GCN             C +C    +  F         IQG  G   + + L  
Sbjct: 27  TVF--LKGCN-----------IHCPWCANPENIAFTPQYYSSDNIQGLFGKYISANDLYM 73

Query: 73  LIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETN 119
            I +     + EG     +GGEPLLQ    VPL++       ++  ET+
Sbjct: 74  EILKDKPFYKTEGG-VTFSGGEPLLQMEKLVPLMEKCKSSEIKLCAETS 121


>gi|330838041|ref|YP_004412621.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185]
 gi|329745805|gb|AEB99161.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185]
          Length = 289

 Score = 38.1 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 22/101 (21%)

Query: 31  GCNLWSGREQDRLSAQCRFCD--TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           GCNL           +C FC   T  +    ++       +LA L  +            
Sbjct: 83  GCNL-----------RCPFCQNYTISMTDGQSETQDVTPAELAALAHDL-SRRPHGNIGV 130

Query: 89  VLTGGEPLLQ-----VDVPLIQALNKRGFEIAVETNGTIEP 124
             T  EPLL         PL   L++ G  + + TNGTI P
Sbjct: 131 AFTYNEPLLSYEFIMDVAPL---LHEAGLFVVLVTNGTIAP 168


>gi|163746267|ref|ZP_02153625.1| radical SAM domain protein [Oceanibulbus indolifex HEL-45]
 gi|161380152|gb|EDQ04563.1| radical SAM domain protein [Oceanibulbus indolifex HEL-45]
          Length = 315

 Score = 38.1 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 8/89 (8%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCVLT 91
           LW        + +C  C   ++              D++ D ++ Q +  +   R    T
Sbjct: 35  LWFNT-GTLCNIECVNC---YIASSPKNDALVYITADEVRDYLD-QIVERDWPVREIAFT 89

Query: 92  GGEPLLQV-DVPLIQALNKRGFEIAVETN 119
           GGEP +    V + +A   RG+E+ + TN
Sbjct: 90  GGEPFMNPQMVEITEASLMRGYEVLILTN 118


>gi|152975978|ref|YP_001375495.1| anaerobic ribonucleoside-triphosphate reductase activating
          protein [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152024730|gb|ABS22500.1| anaerobic ribonucleoside-triphosphate reductase activating
          protein [Bacillus cytotoxicus NVH 391-98]
          Length = 150

 Score = 38.1 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 23/85 (27%)

Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI 74
          GEG       VF  F+GC             +C  C           G     +++   I
Sbjct: 14 GEGLRT---VVF--FAGCP-----------HRCVGCHNPQSWNIC-NGTEMTAEEIIKEI 56

Query: 75 EEQWITGEKEGRYCVLTGGEPLLQV 99
                 +        +GG+P LQ 
Sbjct: 57 V------KNPLTDVTFSGGDPFLQA 75


>gi|77919674|ref|YP_357489.1| MoaA/NifB/PqqE family Fe-S oxidoreductase [Pelobacter carbinolicus
           DSM 2380]
 gi|77545757|gb|ABA89319.1| predicted Fe-S oxidoreductase, MoaA/NifB/PqqE family [Pelobacter
           carbinolicus DSM 2380]
          Length = 336

 Score = 38.1 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 27/141 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C+ C             R  V++     EE             L 
Sbjct: 38  CNL-----------RCKGCG-KISHPPEVMKRRLTVEECVAKAEECG------APIVSLP 79

Query: 92  GGEPLLQVDVPLIQA-LNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL- 149
           GGEPL+  ++ +I   L  R   + + TN  +   + +     SP    ++ + G ++  
Sbjct: 80  GGEPLMHPEIHVIARELIARKRFVYLCTN-ALLVEKRLQDFEPSPYLTFNVHLDGLRDKH 138

Query: 150 ------KLVFPQVNVSPENYI 164
                 K VF Q   S    +
Sbjct: 139 DALVNRKGVFDQAVQSIRRLV 159


>gi|103487140|ref|YP_616701.1| molybdenum cofactor synthesis-like protein [Sphingopyxis
          alaskensis RB2256]
 gi|98977217|gb|ABF53368.1| GTP cyclohydrolase subunit MoaA [Sphingopyxis alaskensis RB2256]
          Length = 337

 Score = 38.1 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 10/59 (16%)

Query: 41 DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
          DR   +CR+C   D  F+     K    +++++A+L E     G +  R   LTGGEPL
Sbjct: 31 DRCDLRCRYCMAEDMRFL----PKSAVLSIEEMAELAERFVARGVRRIR---LTGGEPL 82


>gi|300855584|ref|YP_003780568.1| radical SAM domain-containing protein [Clostridium ljungdahlii DSM
           13528]
 gi|300435699|gb|ADK15466.1| radical SAM domain protein [Clostridium ljungdahlii DSM 13528]
          Length = 462

 Score = 38.1 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 21/106 (19%)

Query: 31  GCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           GC    G   +              R + +C+FC   F      K    +++++      
Sbjct: 77  GCPFDCGLCSEHRQHTCTALIEVTQRCNLKCKFC---FADSYAGKEKDISIEKI--KFMY 131

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNG 120
           + +          L+GGEP ++ D+P +++   K GF+ I V TNG
Sbjct: 132 KKLLESSGSCNVQLSGGEPTIRDDLPDIVKLGRKLGFKFIQVNTNG 177


>gi|290955840|ref|YP_003487022.1| hypothetical protein SCAB_12931 [Streptomyces scabiei 87.22]
 gi|260645366|emb|CBG68452.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 356

 Score = 38.1 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C           G    R  V Q    + E             + 
Sbjct: 51  CNLKC--------EGCG----KIQHPAGVLKQRMPVAQAVGAVLESG------APMVSIA 92

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +  +++ L  +   + + TN  +   + ++    SP     + I G +E
Sbjct: 93  GGEPLMHPQIDEIVRQLVAKRKYVFLCTN-ALLLRKKMEKFKPSPYFAFAVHIDGLRE 149


>gi|47220097|emb|CAF99010.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 354

 Score = 38.1 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 13/112 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       ++ + +C++C     G++ T   R  +   +++++   +  ++      LTG
Sbjct: 19  NYLRVSLTEKCNLRCQYC-MPEDGVKLTP--RSQLLSTSEILKLAGLFVQEGVDKIRLTG 75

Query: 93  GEPLLQVD-VPLIQALNK-RGFE-IAVETNG---TIEPP----QGIDWICVS 134
           GEPL++ D + +I  L    G + IAV TNG       P     G+D I +S
Sbjct: 76  GEPLIRPDVLEIITKLRTLEGLKTIAVTTNGINLARLLPKMKDAGVDLINIS 127


>gi|18976462|ref|NP_577819.1| molybdenum cofactor biosynthesis protein A [Pyrococcus furiosus DSM
           3638]
 gi|24211985|sp|Q8U4J5|MOAA_PYRFU RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|18892001|gb|AAL80214.1| molybdenum cofactor biosynthesis protein [Pyrococcus furiosus DSM
           3638]
          Length = 307

 Score = 38.1 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 18/91 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C       Q         +++  ++    I      R   LT
Sbjct: 21  CNL-----------NCFYC---HREGQQDGERTMTPEEIERIV---RIASRLGIRNVKLT 63

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
           GGEP ++ D+  +IQ +     ++++ TNGT
Sbjct: 64  GGEPTVRPDIYEIIQRIRPYVVDLSMTTNGT 94


>gi|305663253|ref|YP_003859541.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
 gi|304377822|gb|ADM27661.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
          Length = 336

 Score = 38.1 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   +V    G    + + D+   LI+E     E   +  + 
Sbjct: 16  CNL-----------SCIHC---YVNAGRGATLEQLSTDEALRLIQE---IAELGAKAIIF 58

Query: 91  TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           T GEPL++ D + LI+  +  G +  + TNGT+
Sbjct: 59  TSGEPLMRSDILDLIEYASDIGLKPILATNGTL 91


>gi|242398029|ref|YP_002993453.1| Fe-S oxidoreductase [Thermococcus sibiricus MM 739]
 gi|242264422|gb|ACS89104.1| Fe-S oxidoreductase [Thermococcus sibiricus MM 739]
          Length = 247

 Score = 38.1 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
           GEP+L   +  L++  +KRGF   + +NGT
Sbjct: 61  GEPMLYPMIGELVEEFHKRGFTTFIVSNGT 90


>gi|307353123|ref|YP_003894174.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
           DSM 11571]
 gi|307156356|gb|ADN35736.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 317

 Score = 38.1 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR--YCVLTG-GEPLLQVD 100
           S  C +C  +          R      A++IEE      +  R  Y   +G GEP L   
Sbjct: 35  SYNCIYC--ECGKTTNLTSERREYVPTAEVIEELDSYLSESPRLDYITYSGSGEPTLHSG 92

Query: 101 VPLIQALNK---RGFEIAVETNGTIEPPQGI 128
           +  I    K    G+ +A+ TNG++   +G+
Sbjct: 93  IEKITRFIKDNYPGYRVALLTNGSLFFDKGV 123


>gi|304314983|ref|YP_003850130.1| Fe-S oxidoreductase [Methanothermobacter marburgensis str. Marburg]
 gi|302588442|gb|ADL58817.1| predicted Fe-S oxidoreductase [Methanothermobacter marburgensis
           str. Marburg]
          Length = 491

 Score = 38.1 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 14/106 (13%)

Query: 29  FSGCNLWSGREQDRLSA----------QCRF-CDTDFVGIQGTKG-GRYNVDQLADLIEE 76
             GC L  G   +  S           +C   C   F     +K       +++ +++  
Sbjct: 72  LKGCPLDCGLCPEHESHTVLGLIDVTNRCNLKCPICFANAAVSKYLYEPTYEEIREMLRN 131

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
                          GGEP ++ D+  L++   + GF  + + TNG
Sbjct: 132 LRRNRPVPTPAIQYAGGEPTVRKDIVELVKLAREEGFTHVQIATNG 177


>gi|302339424|ref|YP_003804630.1| radical SAM protein [Spirochaeta smaragdinae DSM 11293]
 gi|301636609|gb|ADK82036.1| Radical SAM domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 540

 Score = 38.1 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 44  SAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
             +C +C       +   +    + + LA ++++     E+      L G EP L  D+ 
Sbjct: 269 PQRCSWCPYPKAPSKAIDRSESMSPEALASILDQVLELSEEAVIGLSLWG-EPALHPDIQ 327

Query: 103 LI--QALNKRGFEIAVETNG 120
            +  + +++ G    +ET+G
Sbjct: 328 AMVGEVISRPGLSAMIETSG 347


>gi|297531012|ref|YP_003672287.1| molybdenum cofactor biosynthesis protein A [Geobacillus sp. C56-T3]
 gi|297254264|gb|ADI27710.1| molybdenum cofactor biosynthesis protein A [Geobacillus sp. C56-T3]
          Length = 341

 Score = 38.1 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 13/104 (12%)

Query: 28  RFSGCNLWSGREQ--DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           R +   L   R    D+ + +C +C      + G        DQL   +EE  +  E   
Sbjct: 12  RLAR-PLRDLRLSVTDQCNFRCVYC--MPAEVFGPNFRFLAEDQLL-TVEEMALLAECFV 67

Query: 86  RYCV----LTGGEPLLQVDV-PLIQALNKR-GFE-IAVETNGTI 122
              V    LTGGEPLL+ D+  LI+ L+   G   I + TNG  
Sbjct: 68  ELGVEKIRLTGGEPLLRRDLDALIERLSALPGLRDIGLTTNGVH 111


>gi|282163623|ref|YP_003356008.1| hypothetical protein MCP_0953 [Methanocella paludicola SANAE]
 gi|282155937|dbj|BAI61025.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 280

 Score = 38.1 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 15/79 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  CD      Q       +++Q+   I+E     +   R  VL 
Sbjct: 49  CNL-----------KCYNCD--RSCTQAPSELTMSLEQIRKFIDESISNDKHWSRIRVL- 94

Query: 92  GGEPLLQVDVP-LIQALNK 109
           GGEP L  D+  +++ L  
Sbjct: 95  GGEPTLHPDIDKILKILLD 113


>gi|251781842|ref|YP_002996144.1| pyruvate formate-lyase activating enzyme [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390471|dbj|BAH80930.1| pyruvate formate-lyase activating enzyme [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|322411188|gb|EFY02096.1| Pyruvate formate-lyase activating enzyme [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
 gi|323126656|gb|ADX23953.1| Pyruvate formate-lyase activating enzyme [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 287

 Score = 38.1 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 32/176 (18%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        +F    GC             +C++C   DT  +    +K 
Sbjct: 40  TESFGSVDGPGIRFI----IF--LQGC-----------KMRCQYCHNPDTWEMETNNSKL 82

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
              N D L + ++ +   G+K G    ++GGE +LQ+D    L     K G    ++T G
Sbjct: 83  RTVN-DVLKEALQYKHFWGKKGG--ITVSGGEAMLQIDFITALFTEAKKLGIHTTLDTCG 139

Query: 121 -----TIEPPQGID-WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
                T E  + +D  + V+     DLK    ++ K+V  Q N +   +  +  ++
Sbjct: 140 FAYRPTPEYHEVLDKLLAVTDLILLDLKEIDEEQHKIVTRQPNQNILEFARYLSDK 195


>gi|169349535|ref|ZP_02866473.1| hypothetical protein CLOSPI_00262 [Clostridium spiroforme DSM 1552]
 gi|169293610|gb|EDS75743.1| hypothetical protein CLOSPI_00262 [Clostridium spiroforme DSM 1552]
          Length = 166

 Score = 38.1 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 21/93 (22%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           A+F    GC              C  C           G   +++++   I+E  +    
Sbjct: 22  AIFV--QGC-----------YHNCLGCHNP-KSHDVNGGYLKDIEEILKEIDENPLLDG- 66

Query: 84  EGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
                 L+GGEP+LQ    + L + + KR   I
Sbjct: 67  ----VTLSGGEPMLQVEALIELSKEIKKRNLNI 95


>gi|161527627|ref|YP_001581453.1| radical SAM domain-containing protein [Nitrosopumilus maritimus
           SCM1]
 gi|160338928|gb|ABX12015.1| Radical SAM domain protein [Nitrosopumilus maritimus SCM1]
          Length = 559

 Score = 38.1 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 13/130 (10%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD--QLADLIEEQWITGEKEGRYCVLT 91
           L +    +R    C +C   +V         Y  D  Q+  +++         G    +T
Sbjct: 114 LANMIVTNRCDLTCWYC-FFYVKKGLEGAYMYEPDHTQIRGMMKTLRAERPIPGNSMQIT 172

Query: 92  GGEPLLQVDVP-LIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
           GGEP+L+ D+  +I+ + + G   I + TNG            + P+A  ++++ G   L
Sbjct: 173 GGEPMLREDIADVIKIMKEEGVDHIQMNTNGIRHA--------MDPEAAREVRLAGCNNL 224

Query: 150 KLVFPQVNVS 159
            L F  V   
Sbjct: 225 YLSFDGVTAR 234


>gi|161484622|ref|NP_082740.1| molybdenum cofactor biosynthesis protein 1 isoform 2 [Mus musculus]
 gi|148691686|gb|EDL23633.1| molybdenum cofactor synthesis 1, isoform CRA_c [Mus musculus]
          Length = 385

 Score = 38.1 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +       K      +++  L       G  + R   LT
Sbjct: 80  CNL-----------RCQYCMPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 125

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GGEPL++ D V ++  L+   G   I + TNG
Sbjct: 126 GGEPLIRPDVVDIVARLHGLEGLRTIGLTTNG 157


>gi|124009850|ref|ZP_01694518.1| radical SAM domain protein [Microscilla marina ATCC 23134]
 gi|123984171|gb|EAY24532.1| radical SAM domain protein [Microscilla marina ATCC 23134]
          Length = 310

 Score = 38.1 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLI 104
           C  C      + G KG + + ++   +IE      ++     +L+GGEPL   Q    ++
Sbjct: 23  CAHC----YNLSGPKGAKMSEEECMQIIENLPPKIDR----IILSGGEPLAERQKLYAIL 74

Query: 105 QALNKRGFEIA----VETNGTIEPPQGID 129
             L +R +       ++TNG +   + +D
Sbjct: 75  DRLKQR-YPAHTQLMLQTNGDLLTEEILD 102


>gi|117926754|ref|YP_867371.1| radical SAM protein [Magnetococcus sp. MC-1]
 gi|117610510|gb|ABK45965.1| Radical SAM domain protein [Magnetococcus sp. MC-1]
          Length = 318

 Score = 38.1 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 20/105 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           QCR C       +  +     + Q+  LI +         +   +T
Sbjct: 33  CNL-----------QCRHCHVGAAPQRTEQMSWAVMQQVLALITQSG------CKQVDIT 75

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP 135
           GG P +   + P IQAL  R   + + TN  +   +  DW  ++P
Sbjct: 76  GGAPEMNAHIQPFIQALRARDVAVQLRTN--LTLHRDPDWHAMAP 118


>gi|325262590|ref|ZP_08129327.1| radical SAM domain protein [Clostridium sp. D5]
 gi|324032422|gb|EGB93700.1| radical SAM domain protein [Clostridium sp. D5]
          Length = 451

 Score = 38.1 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 18/98 (18%)

Query: 32  CNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGR 86
           CN+      D  SA   +C  C           G   ++  D+L ++I +    G     
Sbjct: 110 CNVPWLILMDPTSACNLKCTGC------WAAEYGHTLSLTYDELDNIISQGKELGIYFYM 163

Query: 87  YCVLTGGEPLLQVDVPLIQALNKRGFEIAVE--TNGTI 122
           Y   TGGEPL++     I  L ++  E A    TNGT+
Sbjct: 164 Y---TGGEPLVRKAD--IVKLCEKHKECAFHAFTNGTL 196


>gi|255021076|ref|ZP_05293129.1| hypothetical protein ACA_2803 [Acidithiobacillus caldus ATCC 51756]
 gi|254969490|gb|EET26999.1| hypothetical protein ACA_2803 [Acidithiobacillus caldus ATCC 51756]
          Length = 399

 Score = 38.1 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 8/86 (9%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
              A+C +CD +           Y    +ADL  E      +      L GG P L    
Sbjct: 18  WCLAKCPYCDFNSYAAPEFPAEHYVDALIADLERELPRIWGRPVHSIFLGGGTPSLFPPE 77

Query: 102 P---LIQALNKR-----GFEIAVETN 119
               L+  L  R     G E+++E N
Sbjct: 78  SIARLLSELRARLRLMPGLEVSLEAN 103


>gi|282895356|ref|ZP_06303557.1| Radical SAM [Raphidiopsis brookii D9]
 gi|281199607|gb|EFA74468.1| Radical SAM [Raphidiopsis brookii D9]
          Length = 308

 Score = 38.1 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C               + +Q    +EE             + 
Sbjct: 8   CNL-----------ACSGCG-KIQHPTEVLKQNLSPEQCFAAVEECG------APVVSIP 49

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPLL   +  ++Q L  R   + + TNG +   + +     SP     + + G +E
Sbjct: 50  GGEPLLHPQINQIVQGLVDRKKYVYLCTNG-LLLEKSLHKFKPSPYLTFSVHLDGMKE 106


>gi|225388730|ref|ZP_03758454.1| hypothetical protein CLOSTASPAR_02466 [Clostridium asparagiforme
           DSM 15981]
 gi|225045200|gb|EEG55446.1| hypothetical protein CLOSTASPAR_02466 [Clostridium asparagiforme
           DSM 15981]
          Length = 303

 Score = 38.1 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 88  CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
             L+GGEPLLQ +    +++ + + G   A+ET+
Sbjct: 127 ITLSGGEPLLQPEFAAAVLKGMQEEGVHTAMETS 160


>gi|183598216|ref|ZP_02959709.1| hypothetical protein PROSTU_01600 [Providencia stuartii ATCC 25827]
 gi|188020385|gb|EDU58425.1| hypothetical protein PROSTU_01600 [Providencia stuartii ATCC 25827]
          Length = 326

 Score = 38.1 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D  + +C +C    +       G +    L+++        E       +TGGEP ++ D
Sbjct: 21  DVCNFRCTYC----LPDGYKPSGHHEFLSLSEIQRISRAFAELGTEKVRITGGEPTMRKD 76

Query: 101 -VPLIQALNKRG--FEIAVETNG 120
              +I A+++     +IAV TNG
Sbjct: 77  FTDIIAAIHENQAIKKIAVTTNG 99


>gi|167749297|ref|ZP_02421424.1| hypothetical protein EUBSIR_00248 [Eubacterium siraeum DSM 15702]
 gi|167657742|gb|EDS01872.1| hypothetical protein EUBSIR_00248 [Eubacterium siraeum DSM 15702]
          Length = 457

 Score = 38.1 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 29/113 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-----NVDQLADLIEEQWITGEKEGR 86
           CNL           +C++C   F       G R         +  D + +   +  +E  
Sbjct: 107 CNL-----------RCKYC---FAQTGDFGGDRMLMKPETGKKAMDFLIKH--SANRENL 150

Query: 87  YCVLTGGEPLLQVDVPL--------IQALNKRGFEIAVETNGTIEPPQGIDWI 131
                GGEPL+  D  +        I+  + + F   + TNG +   + ID+I
Sbjct: 151 EVDFFGGEPLMAWDTVVETVKYARSIEKQHGKNFRFTITTNGMLLDDEKIDYI 203


>gi|122577959|sp|Q38HX2|HPDA_CLOSL RecName: Full=4-hydroxyphenylacetate decarboxylase activating
           enzyme; AltName: Full=Csd-AE
 gi|77863917|gb|ABB05048.1| 4-hydroxyphenylacetate decarboxylase activating enzyme [Clostridium
           scatologenes]
          Length = 312

 Score = 38.1 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN---KRGFEIAVETN 119
             Y VD+L  +++  +     +G     TGG+PL+  +  L++ L          A+ET+
Sbjct: 111 KEYTVDELMTILKRDFNNWGSDGG-VTFTGGDPLMHHEF-LVEVLKKCYDSQIHKAIETS 168

Query: 120 G 120
           G
Sbjct: 169 G 169


>gi|325829809|ref|ZP_08163267.1| putative heme d1 biosynthesis radical SAM protein NirJ2
           [Eggerthella sp. HGA1]
 gi|325487976|gb|EGC90413.1| putative heme d1 biosynthesis radical SAM protein NirJ2
           [Eggerthella sp. HGA1]
          Length = 334

 Score = 38.1 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L S    ++ + +C  C   +   +       + ++   +I+E    G    +  + +GG
Sbjct: 2   LVSWMTTNKCNLKCVHC---YQDAEEATDKELSCEEGKKMIDEIARAG---FKVMIFSGG 55

Query: 94  EPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           EPL++ D+  L+     RG      +NGT+  P+
Sbjct: 56  EPLMRPDIYELVAHAASRGLRPVFGSNGTLITPE 89


>gi|317489825|ref|ZP_07948322.1| radical SAM superfamily protein [Eggerthella sp. 1_3_56FAA]
 gi|316911074|gb|EFV32686.1| radical SAM superfamily protein [Eggerthella sp. 1_3_56FAA]
          Length = 334

 Score = 38.1 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L S    ++ + +C  C   +   +       + ++   +I+E    G    +  + +GG
Sbjct: 2   LVSWMTTNKCNLKCVHC---YQDAEEATDKELSCEEGKKMIDEIARAG---FKVMIFSGG 55

Query: 94  EPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           EPL++ D+  L+     RG      +NGT+  P+
Sbjct: 56  EPLMRPDIYELVAHAASRGLRPVFGSNGTLITPE 89


>gi|291556614|emb|CBL33731.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Eubacterium siraeum
           V10Sc8a]
          Length = 457

 Score = 38.1 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 29/113 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-----NVDQLADLIEEQWITGEKEGR 86
           CNL           +C++C   F       G R         +  D + +   +  +E  
Sbjct: 107 CNL-----------RCKYC---FAQTGDFGGDRMLMKPETGKKAMDFLIKH--SANRENL 150

Query: 87  YCVLTGGEPLLQVDVPL--------IQALNKRGFEIAVETNGTIEPPQGIDWI 131
                GGEPL+  D  +        I+  + + F   + TNG +   + ID+I
Sbjct: 151 EVDFFGGEPLMAWDTVVETVKYARSIEKQHGKNFRFTITTNGMLLDDEKIDYI 203


>gi|284097785|ref|ZP_06385774.1| heme d1 biosynthesis protein NirJ [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283830685|gb|EFC34806.1| heme d1 biosynthesis protein NirJ [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 454

 Score = 38.1 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 16/91 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C  D     G      + ++   LI++     +      V+T
Sbjct: 52  CNL-----------KCDHCYLDATTKAGGGSDELSTEECYRLIDQIAEVNKGC--LLVIT 98

Query: 92  GGEPLLQVDVPLIQALNK--RGFEIAVETNG 120
           GGEPL++ D+ L  A +   +GF +   TNG
Sbjct: 99  GGEPLVRPDI-LDIARHAVGQGFMVVFGTNG 128


>gi|225871127|ref|YP_002747074.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp.
           equi 4047]
 gi|225700531|emb|CAW95000.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp.
           equi 4047]
          Length = 263

 Score = 38.1 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 32/176 (18%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        +F    GC             +C++C   DT +        
Sbjct: 16  TESFGSVDGPGIRFI----IF--LQGC-----------KMRCQYCHNPDT-WAMETNQSQ 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
            R   D L + ++ +   G+K G    ++GGE +LQ+D    L     K G    ++T G
Sbjct: 58  RRTVNDVLKEALQYRHFWGKKGG--ITVSGGEAMLQMDFITALFTEAKKLGIHTTLDTCG 115

Query: 121 -TIEPPQGI-----DWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
               P           + V+     DLK    ++ KLV  Q N +   +  +  +R
Sbjct: 116 FAYRPTPEYHELLETLLAVTDLILLDLKEIDEEQHKLVTRQPNKNILQFARYLSDR 171


>gi|195978725|ref|YP_002123969.1| pyruvate formate-lyase-activating enzyme [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225867958|ref|YP_002743906.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp.
           zooepidemicus]
 gi|195975430|gb|ACG62956.1| pyruvate formate-lyase-activating enzyme [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225701234|emb|CAW98186.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp.
           zooepidemicus]
          Length = 263

 Score = 38.1 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 32/176 (18%)

Query: 7   KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
            E F ++ G G        +F    GC             +C++C   DT +        
Sbjct: 16  TESFGSVDGPGIRFI----IF--LQGC-----------KMRCQYCHNPDT-WAMETNQSQ 57

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
            R   D L + ++ +   G+K G    ++GGE +LQ+D    L     K G    ++T G
Sbjct: 58  RRTVNDVLKEALQYRHFWGKKGG--ITVSGGEAMLQMDFITALFTEAKKLGIHTTLDTCG 115

Query: 121 -TIEPPQGI-----DWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
               P           + V+     DLK    ++ KLV  Q N +   +  +  +R
Sbjct: 116 FAYRPTPEYHELLETLLAVTDLILLDLKEIDEEQHKLVTRQPNKNILQFARYLSDR 171


>gi|154148652|ref|YP_001406023.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Campylobacter hominis ATCC BAA-381]
 gi|153804661|gb|ABS51668.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Campylobacter hominis ATCC BAA-381]
          Length = 225

 Score = 38.1 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 29/122 (23%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
           F GCN+           +C +C +T  V       G++  D L + ++        +   
Sbjct: 25  FCGCNM-----------RCVYCYNTKIV---SATNGKFGADDLYEFLK----MRRNKLDA 66

Query: 88  CVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSPKAG 138
            V +GGE        + +++ +   GF   ++TNG+              D+I +  KAG
Sbjct: 67  VVFSGGE-CTNCHEILEILKCVKNLGFLNKIDTNGSNPDILAEILKRNLADFISLDFKAG 125

Query: 139 CD 140
            +
Sbjct: 126 NE 127


>gi|18313235|ref|NP_559902.1| molybdenum cofactor biosynthesis protein (moaA) [Pyrobaculum
           aerophilum str. IM2]
 gi|18160754|gb|AAL64084.1| molybdenum cofactor biosynthesis protein (moaA) [Pyrobaculum
           aerophilum str. IM2]
          Length = 580

 Score = 38.1 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           L      +R +  C  C   F             ++Q+  ++               ++G
Sbjct: 153 LAIIDVTNRCNMACPVC---FANAGAAGYVYEPTLEQIEYMLRTLRAQKPWPPNAIQISG 209

Query: 93  GEPLLQVDVPLIQALNKRGFEIAVE--TNG 120
           GEP L+ D+P I  + KR     VE  TNG
Sbjct: 210 GEPTLRDDLPEIVRMAKRLGFTHVEVNTNG 239


>gi|255658436|ref|ZP_05403845.1| organic radical activating enzyme family protein [Mitsuokella
           multacida DSM 20544]
 gi|260849772|gb|EEX69779.1| organic radical activating enzyme family protein [Mitsuokella
           multacida DSM 20544]
          Length = 213

 Score = 38.1 bits (88), Expect = 0.87,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 16/81 (19%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            +GC             +C  C ++    Q   G   + ++L +L+       +  G   
Sbjct: 29  LAGCP-----------RRCPGC-SNPELWQAQAGQALSQERLQELLRPFLSREDLGG--V 74

Query: 89  VLTGGEPLLQVD--VPLIQAL 107
           V+TGG+P  Q D  +PL+  L
Sbjct: 75  VVTGGDPFFQADALLPLLAYL 95


>gi|320530010|ref|ZP_08031085.1| molybdenum cofactor biosynthesis protein A [Selenomonas artemidis
           F0399]
 gi|320137746|gb|EFW29653.1| molybdenum cofactor biosynthesis protein A [Selenomonas artemidis
           F0399]
          Length = 305

 Score = 38.1 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 10/79 (12%)

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFE-IAVETNGTI 122
           ++    +++ +         R   LTGGEPL++ D+  L++ L +  G E +AV TNG +
Sbjct: 13  DILSYEEILRDVRALAALGIRKVRLTGGEPLVRRDIVTLVRGLKEIPGIETVAVTTNGVL 72

Query: 123 -------EPPQGIDWICVS 134
                      G+D + +S
Sbjct: 73  LGTMLDDLVAAGLDAVNLS 91


>gi|294338253|emb|CBJ94291.1| hypothetical phage protein (Radical SAM family) [Campylobacter
           phage CPt10]
          Length = 266

 Score = 38.1 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-L 90
           C +      D     C +C +    ++              LI++     +   R+ + +
Sbjct: 2   CKVIVLNLIDYCGFNCEYCSS--SQVKKVNSNPLTKLNFLMLIKQ---IEKSLSRFIIKV 56

Query: 91  TGGEPLLQVD-VPLIQALN--KRGFEIAVETNGT 121
           TGGEP L  + +  I+ LN  K    + + TNG+
Sbjct: 57  TGGEPTLHPNFLEFIEKLNNVKNIQRVIITTNGS 90


>gi|209518310|ref|ZP_03267135.1| Radical SAM domain protein [Burkholderia sp. H160]
 gi|209501229|gb|EEA01260.1| Radical SAM domain protein [Burkholderia sp. H160]
          Length = 388

 Score = 38.1 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 13/100 (13%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
             AV      C++      +  +A C FC   F   +   G R  +D   +      I  
Sbjct: 27  LPAV------CDV---SVTNVCNAACDFC--GFSREKKLAGPRRYLDP-DEFARALPILR 74

Query: 82  EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
            +  RY  L GGEPL+  ++  L+ +  K G +  V TNG
Sbjct: 75  RRRIRYMTLQGGEPLVHPEIASLVASTTKAGIQCGVITNG 114


>gi|125973052|ref|YP_001036962.1| radical SAM family protein [Clostridium thermocellum ATCC 27405]
 gi|256004555|ref|ZP_05429533.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
 gi|281417247|ref|ZP_06248267.1| Radical SAM domain protein [Clostridium thermocellum JW20]
 gi|125713277|gb|ABN51769.1| Radical SAM [Clostridium thermocellum ATCC 27405]
 gi|255991427|gb|EEU01531.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
 gi|281408649|gb|EFB38907.1| Radical SAM domain protein [Clostridium thermocellum JW20]
 gi|316940727|gb|ADU74761.1| Radical SAM domain protein [Clostridium thermocellum DSM 1313]
          Length = 510

 Score = 38.1 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 18/91 (19%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCN+           +C+ C +     +    G    ++   L +E    G    ++  L
Sbjct: 14  GCNM-----------RCKHCGS---SCENALEGELTTEEALKLCDELGELG---FKWITL 56

Query: 91  TGGEPLLQVDVPLI-QALNKRGFEIAVETNG 120
           +GGEP  + D  LI + LN+ G    + TNG
Sbjct: 57  SGGEPTTRKDWHLIAKRLNENGIIPNMITNG 87


>gi|330433419|gb|AEC18478.1| molybdenum cofactor biosynthesis protein A [Gallibacterium anatis
           UMN179]
          Length = 338

 Score = 38.1 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 17/106 (16%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRY--NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C     G Q     +   +VD++A L+      G ++ R   +TGGEP L+
Sbjct: 32  DVCNFKCNYC--LPNGYQPPSNKQMFLSVDEIARLVSAFAELGTEKVR---ITGGEPTLR 86

Query: 99  VD-VPLIQALNKRG--FEIAVETNG-------TIEPPQGIDWICVS 134
            D + +++A+ ++    +IA+ TNG             GID I VS
Sbjct: 87  KDFLAVVEAIRRQQSIKKIALTTNGYRMAKEVASWKQAGIDSINVS 132


>gi|303245560|ref|ZP_07331843.1| Methyltransferase type 11 [Desulfovibrio fructosovorans JJ]
 gi|302492823|gb|EFL52688.1| Methyltransferase type 11 [Desulfovibrio fructosovorans JJ]
          Length = 797

 Score = 38.1 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 27/92 (29%), Gaps = 19/92 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC               +       I +    G    R   LT
Sbjct: 89  CNLAC--------RHCLFC------SGPAATRELSTATALSRIAQARALG---CRVFALT 131

Query: 92  GGEPLLQVDVPLI--QALNKRGFEIAVETNGT 121
           GGEP L      I   AL      + V TNGT
Sbjct: 132 GGEPFLHPGFEAILDAALADPAAHVVVLTNGT 163


>gi|240102218|ref|YP_002958526.1| Anaerobic ribonucleotide triphosphate reductase activating enzyme
           (NrdG) [Thermococcus gammatolerans EJ3]
 gi|239909771|gb|ACS32662.1| Anaerobic ribonucleotide triphosphate reductase activating enzyme
           (NrdG) [Thermococcus gammatolerans EJ3]
          Length = 246

 Score = 38.1 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 22/95 (23%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ--LADLIEEQWITGEKEGR 86
             GCNL           +C FC              + +D+  L D +E      +    
Sbjct: 24  LCGCNL-----------RCPFC---HNWRIAEGLDCFPLDEKALLDELEASAFLIDYFH- 68

Query: 87  YCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETN 119
              +TGGEPL+Q      L   +      I++ TN
Sbjct: 69  ---VTGGEPLVQWRELGSLFAGVKLLDVPISLNTN 100


>gi|160879324|ref|YP_001558292.1| glycyl-radical activating family protein [Clostridium
           phytofermentans ISDg]
 gi|160427990|gb|ABX41553.1| glycyl-radical enzyme activating protein family [Clostridium
           phytofermentans ISDg]
          Length = 263

 Score = 38.1 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 26/107 (24%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC-----------DTDFVGIQGTKGGRYNVDQLADL 73
           VF    GC           + +CR+C                G     G    V ++ + 
Sbjct: 28  VF--LKGC-----------AFRCRWCCNPESQEHEIQTMKVQGKDKIIGTDVTVSEVLEE 74

Query: 74  IEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           + +     ++ G    L+GGE L Q +    L+ A  + G   A+E+
Sbjct: 75  VLKDRNYYQRSGGGVTLSGGEALCQPEFTNHLLHACKEEGLHTAMES 121


>gi|293375956|ref|ZP_06622216.1| radical SAM domain protein [Turicibacter sanguinis PC909]
 gi|325841962|ref|ZP_08167539.1| radical SAM domain protein [Turicibacter sp. HGF1]
 gi|292645393|gb|EFF63443.1| radical SAM domain protein [Turicibacter sanguinis PC909]
 gi|325489795|gb|EGC92150.1| radical SAM domain protein [Turicibacter sp. HGF1]
          Length = 291

 Score = 38.1 bits (88), Expect = 0.89,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 61/185 (32%), Gaps = 35/185 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C FC +      G  G   N D    +++E          + +  
Sbjct: 15  CNL-----------KCDFCPSA---TLGRNGKVMNEDDFKHILKEVKPYTNYLYFHLL-- 58

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
            GEP L   +   ++  ++ G ++ + TNG        T+     +  I  S        
Sbjct: 59  -GEPFLNPRIGRFLEMSHEAGIQVNLTTNGVLIGKVKETLIQSPALRQINFS--VHSFEA 115

Query: 143 IKGGQELKLVFPQVN--VSPENYIGFDFERFSLQPMDGPFLEENTNL---AISYCFQ--N 195
            +  Q LK    Q+   +     +   +    L  MDG  L+    L    +    +  +
Sbjct: 116 NESTQTLKDYLMQIASFIDEIQAVRPVYCNLRLWNMDGEALQAKNTLNQQILDLIEEAFH 175

Query: 196 PKWRL 200
             +RL
Sbjct: 176 LPYRL 180


>gi|116748754|ref|YP_845441.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116697818|gb|ABK17006.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 470

 Score = 38.1 bits (88), Expect = 0.89,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 36/107 (33%), Gaps = 21/107 (19%)

Query: 30  SGCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE 75
            GC    G   D              R    C +C   +           ++  L  + E
Sbjct: 76  QGCPKDCGLCPDHRQQTCTALIEVTHRCDLSCAYC---YADSGTADFPDPDLYALRCMFE 132

Query: 76  EQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
                G +      L+GGEP ++ D+P +I      GF  I V TNG
Sbjct: 133 RLLRAGNRC--NIQLSGGEPTIREDLPDIIALGRSLGFSFIQVNTNG 177


>gi|296447401|ref|ZP_06889327.1| molybdenum cofactor biosynthesis protein A [Methylosinus
           trichosporium OB3b]
 gi|296255104|gb|EFH02205.1| molybdenum cofactor biosynthesis protein A [Methylosinus
           trichosporium OB3b]
          Length = 360

 Score = 38.1 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 10/87 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C ++ +     +     +++L  L       G ++ R   +TGGEPL++ D
Sbjct: 48  DRCDFRCVYCMSEHMEFL-PRRDLLTLEELDRLCTAFIERGTRKLR---ITGGEPLMRRD 103

Query: 101 V-PLIQAL---NKRGF--EIAVETNGT 121
           +  L + L      G   E+ + TNG+
Sbjct: 104 ISSLFRRLSRHLASGLLDELTLTTNGS 130


>gi|270264732|ref|ZP_06192997.1| hypothetical protein SOD_i01490 [Serratia odorifera 4Rx13]
 gi|270041415|gb|EFA14514.1| hypothetical protein SOD_i01490 [Serratia odorifera 4Rx13]
          Length = 398

 Score = 38.1 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I    +TGE+     V+ G
Sbjct: 132 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALKVTGERPITNVVMMG 191

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 192 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 242


>gi|260459420|ref|ZP_05807675.1| molybdenum cofactor biosynthesis protein A [Mesorhizobium
           opportunistum WSM2075]
 gi|259034974|gb|EEW36230.1| molybdenum cofactor biosynthesis protein A [Mesorhizobium
           opportunistum WSM2075]
          Length = 331

 Score = 38.1 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 64/170 (37%), Gaps = 32/170 (18%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+        + ++  L +L     +  EK  R   LTGGEPL+
Sbjct: 20  DRCDFRCTYCMAEDMAFL-------PKKDLLSLEELDRLCTVFVEKGVRRLRLTGGEPLV 72

Query: 98  QVDV-PLIQALNKRGFEIAVE-----TNG-------TIEPPQGIDWICVS------PKAG 138
           + ++  L++ L++     A+E     TNG       T     G+  + VS       K  
Sbjct: 73  RKNIMHLVRQLSRHLESGALEELTLTTNGSQLARFATELADCGVKRVNVSLDTLDADKFH 132

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
              KI     L  V   ++ +    +       +L+  +   L E    A
Sbjct: 133 ---KITRWGHLDKVMAGIDAAQAAGLKVKLNAVALKDFNDAELPEMMRWA 179


>gi|157364470|ref|YP_001471237.1| radical SAM domain-containing protein [Thermotoga lettingae TMO]
 gi|157315074|gb|ABV34173.1| Radical SAM domain protein [Thermotoga lettingae TMO]
          Length = 310

 Score = 38.1 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 20/100 (20%)

Query: 13  LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
           + GE    G   +F  FSGCNL           +C +C  +    Q   G   + ++LA+
Sbjct: 54  ISGE---TGAGTIF--FSGCNL-----------RCVYC-QNMNFSQKADGVEISTEELAE 96

Query: 73  LIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF 112
           +  +      K       T   P L   +  +    + GF
Sbjct: 97  IFLDLQSHNAKCLNLVTPT---PHLPFIIEALSIAKREGF 133


>gi|157371847|ref|YP_001479836.1| ribosomal RNA large subunit methyltransferase N [Serratia
           proteamaculans 568]
 gi|205829876|sp|A8GHW8|RLMN_SERP5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157323611|gb|ABV42708.1| radical SAM enzyme, Cfr family [Serratia proteamaculans 568]
          Length = 398

 Score = 38.1 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I    +TGE+     V+ G
Sbjct: 132 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALKVTGERPITNVVMMG 191

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 192 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 242


>gi|294993384|ref|ZP_06799075.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis 210]
          Length = 136

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 17/83 (20%)

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQAL-----NKRGFE-IAVET 118
           +V +++ +++     G  + R   +TGGEPL++ D+P +++ L        G   +A+ T
Sbjct: 16  SVKEISAIVDVFLSVGVSKVR---ITGGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITT 72

Query: 119 NGTIEPP-------QGIDWICVS 134
           NG +           G+  I VS
Sbjct: 73  NGVLLADRVDGLKAAGMKRITVS 95


>gi|256821125|ref|YP_003142324.1| Radical SAM domain-containing protein [Anaerococcus prevotii DSM
           20548]
 gi|256799105|gb|ACV29759.1| Radical SAM domain protein [Anaerococcus prevotii DSM 20548]
          Length = 728

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 33/105 (31%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL- 90
           CNL           +C +C   ++  + +   + + D     I+          +  +L 
Sbjct: 32  CNL-----------RCSYC---YITHKSSN-KKMSFDVAKKFIDYVLSEEMIRPKGVILD 76

Query: 91  -TGGEPLLQVDVPLIQALNKR--------------GFEIAVETNG 120
             GGEPLL  ++ LI  +                  + I + TNG
Sbjct: 77  FIGGEPLL--EIKLIDQICDYFKRKAYLLKDERYWDYRINITTNG 119


>gi|215428561|ref|ZP_03426480.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis T92]
 gi|215447391|ref|ZP_03434143.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis T85]
 gi|308406054|ref|ZP_07494957.2| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu012]
 gi|308364661|gb|EFP53512.1| molybdenum cofactor biosynthesis protein A moaA1 [Mycobacterium
           tuberculosis SUMu012]
          Length = 315

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 17/83 (20%)

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQAL-----NKRGFE-IAVET 118
           +V +++ +++     G  + R   +TGGEPL++ D+P +++ L        G   +A+ T
Sbjct: 16  SVKEISAIVDVFLSVGVSKVR---ITGGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITT 72

Query: 119 NGTIEPP-------QGIDWICVS 134
           NG +           G+  I VS
Sbjct: 73  NGVLLADRVDGLKAAGMKRITVS 95


>gi|215412973|ref|ZP_03421674.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis 94_M4241A]
          Length = 315

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 17/83 (20%)

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQAL-----NKRGFE-IAVET 118
           +V +++ +++     G  + R   +TGGEPL++ D+P +++ L        G   +A+ T
Sbjct: 16  SVKEISAIVDVFLSVGVSKVR---ITGGEPLIRPDLPEIVRTLSAKVGEDSGLRDLAITT 72

Query: 119 NGTIEPP-------QGIDWICVS 134
           NG +           G+  I VS
Sbjct: 73  NGVLLADRVDGLKAAGMKRITVS 95


>gi|111219790|ref|YP_710584.1| putative tungsten-containing aldehyde ferredoxin oxidoreductase
           cofactor modifying protein [Frankia alni ACN14a]
 gi|111147322|emb|CAJ58972.1| putative tungsten-containing aldehyde ferredoxin oxidoreductase
           cofactor modifying protein [Frankia alni ACN14a]
          Length = 424

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 94  EPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134
           EPL   D    I  L +RG  + + TNG +  P+ IDWI  S
Sbjct: 77  EPLAAPDWQDTISFLQRRGIAVTLVTNGGLLTPESIDWIVAS 118


>gi|75910829|ref|YP_325125.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Anabaena variabilis ATCC 29413]
 gi|75704554|gb|ABA24230.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Anabaena variabilis ATCC 29413]
          Length = 207

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 20/96 (20%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           G  AV     GC             +C  C                +  +  L+E+    
Sbjct: 35  GCRAV-VWVQGCP-----------RECPGC----FNPDSWTFEINQLVSVDSLVEQILSK 78

Query: 81  GEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
            + +G     +GGEP  Q      L + L   G  +
Sbjct: 79  PQNQG--VTFSGGEPFYQATALAELARKLKAAGLSV 112


>gi|78221524|ref|YP_383271.1| radical SAM:molybdenum cofactor synthesis-like [Geobacter
           metallireducens GS-15]
 gi|78192779|gb|ABB30546.1| GTP cyclohydrolase subunit MoaA [Geobacter metallireducens GS-15]
          Length = 326

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +CR+C         + G   + ++L+ +       G ++ R   +TG
Sbjct: 12  NYLRLSVTDRCNLRCRYCMPAEGVEMLSHGEILSYEELSRIARAAVAIGIEKIR---ITG 68

Query: 93  GEPLLQVDV-PLIQALNKR-GFE-IAVETNGTIEPPQGID 129
           GEPL++  + P +  +    G   + + TNG + P    D
Sbjct: 69  GEPLVRRGIVPFLAGIAALPGLRQLVLTTNGILLPEMAAD 108


>gi|18978344|ref|NP_579701.1| hypothetical protein PF1972 [Pyrococcus furiosus DSM 3638]
 gi|18894176|gb|AAL82096.1| hypothetical protein PF1972 [Pyrococcus furiosus DSM 3638]
          Length = 238

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 21/107 (19%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
             GCNL           +C FC  ++   QG +  +   ++L   +EE     +      
Sbjct: 24  LCGCNL-----------RCPFC-HNWKLAQGMECFKLEKEELIAEVEENSYLVDYFH--- 68

Query: 89  VLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQG--IDWI 131
            +TGGEPL+Q      L++ + +    +++ +N T+  P    ID +
Sbjct: 69  -VTGGEPLIQWREFQELLREVREY-LPVSLNSNLTLVKPLEKIIDLV 113


>gi|228934843|ref|ZP_04097674.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228824743|gb|EEM70544.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 307

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+  +P LI+ LNK  G E I +
Sbjct: 14  SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPQLIERLNKIDGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVS 134
            TNG++      D        + VS
Sbjct: 71  TTNGSLLKKFAPDLYKAGLSRVTVS 95


>gi|228947184|ref|ZP_04109478.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228812431|gb|EEM58758.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 307

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+  +P LI+ LNK  G E I +
Sbjct: 14  SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPQLIERLNKIDGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVS 134
            TNG++      D        + VS
Sbjct: 71  TTNGSLLKKFAPDLYKAGLSRVTVS 95


>gi|229092533|ref|ZP_04223689.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock3-42]
 gi|228690820|gb|EEL44595.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock3-42]
          Length = 307

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+  +P LI+ LNK  G E I +
Sbjct: 14  SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPQLIERLNKIDGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVS 134
            TNG++      D        + VS
Sbjct: 71  TTNGSLLKKFAPDLYKAGLSRVTVS 95


>gi|229123083|ref|ZP_04252290.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           95/8201]
 gi|228660377|gb|EEL16010.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           95/8201]
          Length = 307

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+  +P LI+ LNK  G E I +
Sbjct: 14  SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPQLIERLNKIDGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVS 134
            TNG++      D        + VS
Sbjct: 71  TTNGSLLKKFAPDLYKAGLSRVTVS 95


>gi|229162400|ref|ZP_04290363.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           R309803]
 gi|228621084|gb|EEK77947.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           R309803]
          Length = 307

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+  +P LI+ LNK  G E I +
Sbjct: 14  SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPQLIERLNKIDGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVS 134
            TNG++      D        + VS
Sbjct: 71  TTNGSLLKKFAPDLYKAGLSRVTVS 95


>gi|229185802|ref|ZP_04312977.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BGSC
           6E1]
 gi|228597680|gb|EEK55325.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus BGSC
           6E1]
          Length = 307

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+  +P LI+ LNK  G E I +
Sbjct: 14  SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPQLIERLNKIDGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVS 134
            TNG++      D        + VS
Sbjct: 71  TTNGSLLKKFAPDLYKAGLSRVTVS 95


>gi|229197678|ref|ZP_04324398.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1293]
 gi|228585755|gb|EEK43853.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1293]
          Length = 307

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+  +P LI+ LNK  G E I +
Sbjct: 14  SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPQLIERLNKIDGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVS 134
            TNG++      D        + VS
Sbjct: 71  TTNGSLLKKFAPDLYKAGLSRVTVS 95


>gi|218887985|ref|YP_002437306.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758939|gb|ACL09838.1| Radical SAM domain protein [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 359

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 13/108 (12%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           G          C L +       +  C+ C       +    G ++ ++   LI+     
Sbjct: 8   GTPT-------CKLIAWEVTRSCNLACKHC--RAEAHEEPYPGEFSTEEAKALIDTFPQV 58

Query: 81  GEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127
           G       + TGG+P+++ DV  LI      G    +  NGT+  P+ 
Sbjct: 59  G---NPIIIFTGGDPMMRADVYELIAYATGLGLRCVMSPNGTLITPET 103


>gi|157146410|ref|YP_001453729.1| pyruvate formate lyase-activating enzyme 1 [Citrobacter koseri ATCC
           BAA-895]
 gi|157083615|gb|ABV13293.1| hypothetical protein CKO_02169 [Citrobacter koseri ATCC BAA-895]
          Length = 255

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC             +C +C   DT         G    V+ L   +          G
Sbjct: 36  FQGC-----------LMRCLYCHNRDT----WDTHGGKEVTVEDLMKEVVTYRHFMNASG 80

Query: 86  RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                +GGE +LQ +      +A  K      ++TNG
Sbjct: 81  GGVTASGGEAILQAEFVRDWFRACKKESIHTCLDTNG 117


>gi|24373955|ref|NP_717998.1| radical activating enzyme [Shewanella oneidensis MR-1]
 gi|24348393|gb|AAN55442.1|AE015681_6 radical activating enzyme [Shewanella oneidensis MR-1]
          Length = 286

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 13/103 (12%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVG---IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           N  +  +      +C  CDT           K  RY V+++  ++  Q            
Sbjct: 60  NANNKHQTHWDKDRCSQCDTCLAVCPQQANPKVTRYTVEEILAILHHQR----HFINGIT 115

Query: 90  LTGGEPLLQV--DVPLIQALNK----RGFEIAVETNGTIEPPQ 126
           ++GGE  LQ+   + L +A+            ++TNG++    
Sbjct: 116 VSGGEASLQLPFIIELFKAIKASTSLSQLTCMLDTNGSLSLTG 158


>gi|332087964|gb|EGI93089.1| hypothetical protein SB521682_2897 [Shigella boydii 5216-82]
          Length = 384

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N            R  L+            + I Y  
Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281


>gi|312973242|ref|ZP_07787414.1| UPF0063 protein yfgB [Escherichia coli 1827-70]
 gi|310331837|gb|EFP99072.1| UPF0063 protein yfgB [Escherichia coli 1827-70]
          Length = 339

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 73  CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 132

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 133 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 190

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N            R  L+            + I Y  
Sbjct: 191 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 236


>gi|300920672|ref|ZP_07137083.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1]
 gi|300412353|gb|EFJ95663.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1]
          Length = 384

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N            R  L+            + I Y  
Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281


>gi|297519092|ref|ZP_06937478.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           OP50]
          Length = 330

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N            R  L+            + I Y  
Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281


>gi|294053874|ref|YP_003547532.1| molybdenum cofactor biosynthesis protein A [Coraliomargarita
           akajimensis DSM 45221]
 gi|293613207|gb|ADE53362.1| molybdenum cofactor biosynthesis protein A [Coraliomargarita
           akajimensis DSM 45221]
          Length = 335

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 22/93 (23%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +V ++  +  R++  +L  ++      G ++ R   LTG
Sbjct: 19  DRCNLRCTYCMPKEVFGPD--YVFLKKQEWLRFS--ELDAVVAAFVRLGVRKLR---LTG 71

Query: 93  GEPLLQV-DVPLIQALNKRGFE----IAVETNG 120
           GEPLL+   +  I+ L +  FE    +A+ TNG
Sbjct: 72  GEPLLRPGLLKYIEGLRR--FEPIEDVALTTNG 102


>gi|291546983|emb|CBL20091.1| glycyl-radical enzyme activating protein family [Ruminococcus sp.
           SR1/5]
          Length = 263

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 27/120 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC-----------DTDFVGIQGTKGGRYNVDQLADL 73
           VF    GC             +CR+C           +   +G     G    V ++ + 
Sbjct: 28  VF--LKGC-----------VLRCRWCCNPESQEYRIQNMKVLGEDKVIGRDVTVREMIEE 74

Query: 74  IEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           +E+      + G    L+GGE + Q D    L++A  +RG   AVE +    P + I+ +
Sbjct: 75  VEKDRAYYYRSGGGITLSGGECMCQADFSRDLLRAAKERGINTAVE-SMACAPWEKIEQV 133


>gi|293415781|ref|ZP_06658424.1| cfr family radical SAM enzyme [Escherichia coli B185]
 gi|291433429|gb|EFF06408.1| cfr family radical SAM enzyme [Escherichia coli B185]
          Length = 384

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N            R  L+            + I Y  
Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281


>gi|288957562|ref|YP_003447903.1| molybdenum cofactor biosynthesis protein A [Azospirillum sp. B510]
 gi|288909870|dbj|BAI71359.1| molybdenum cofactor biosynthesis protein A [Azospirillum sp. B510]
          Length = 350

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 26/96 (27%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+     K     +++L  L       G ++ R   LTGGEPL+
Sbjct: 38  DRCDLRCVYCMAEDMSFL----PKAEVLTLEELDRLCSAFVKLGTRKLR---LTGGEPLV 90

Query: 98  QVDVP-LIQALNKRGFEIAVE----------TNGTI 122
           + DV  LI++L +      +E          TNGT+
Sbjct: 91  RRDVMRLIRSLGR-----HIESGDLDELTLTTNGTM 121


>gi|288818491|ref|YP_003432839.1| molybdenum cofactor biosynthesis protein A [Hydrogenobacter
           thermophilus TK-6]
 gi|288787891|dbj|BAI69638.1| molybdenum cofactor biosynthesis protein A [Hydrogenobacter
           thermophilus TK-6]
 gi|308752081|gb|ADO45564.1| molybdenum cofactor biosynthesis protein A [Hydrogenobacter
           thermophilus TK-6]
          Length = 334

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C+FC             R  +    ++     ++ +   R   +TGGEPL++  
Sbjct: 19  DRCNFRCQFC--MPENQDYEFYSRSEILTFEEIERIVRVSTKLGVRKVRITGGEPLVRKH 76

Query: 101 VP-LIQAL-NKRGFE-IAVETNG 120
           +  LI  L +  G   I++ TNG
Sbjct: 77  IENLIHLLSHVDGLHDISMTTNG 99


>gi|281601919|gb|ADA74903.1| protein yfgB [Shigella flexneri 2002017]
          Length = 340

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 74  CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 133

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 134 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 191

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N            R  L+            + I Y  
Sbjct: 192 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 237


>gi|262041408|ref|ZP_06014612.1| arylsulfatase-activating protein AtsB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041262|gb|EEW42329.1| arylsulfatase-activating protein AtsB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 395

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 26/102 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC--V 89
           CNL            CR+C   +         + +  +L   I           R    V
Sbjct: 35  CNL-----------ACRYC---YYPQDEKPVNKMDDARLEQFIRRYIAAQPAGAREINFV 80

Query: 90  LTGGEPLLQVDVPLIQ---ALNKR----GFEI--AVETNGTI 122
             GGEPLL   +   +   AL  R    G  I  +++TNGT+
Sbjct: 81  WQGGEPLL-AGLSFYKKALALQARYAPDGVTISNSLQTNGTL 121


>gi|260869206|ref|YP_003235608.1| putative enzyme [Escherichia coli O111:H- str. 11128]
 gi|257765562|dbj|BAI37057.1| predicted enzyme [Escherichia coli O111:H- str. 11128]
 gi|323177359|gb|EFZ62947.1| hypothetical protein ECOK1180_3845 [Escherichia coli 1180]
          Length = 384

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N            R  L+            + I Y  
Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281


>gi|256822556|ref|YP_003146519.1| molybdenum cofactor biosynthesis protein A [Kangiella koreensis DSM
           16069]
 gi|256796095|gb|ACV26751.1| molybdenum cofactor biosynthesis protein A [Kangiella koreensis DSM
           16069]
          Length = 332

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 13/88 (14%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR + +C +C   D  F+     K      ++L  + +     G  + R   LTGGEPL+
Sbjct: 24  DRCNFRCVYCMAEDMTFL----PKQRLLCYEELTQISQAFTELGVNKIR---LTGGEPLV 76

Query: 98  -QVDVPLIQALNKRG--FEIAVETNGTI 122
               + L   L +      +A+ TNG++
Sbjct: 77  RHDIIKLTSNLGQLDGLKNLAITTNGSM 104


>gi|209763358|gb|ACI79991.1| hypothetical protein ECs3379 [Escherichia coli]
 gi|320646304|gb|EFX15231.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H- str. 493-89]
 gi|320651809|gb|EFX20189.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H- str. H 2687]
          Length = 384

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N            R  L+            + I Y  
Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281


>gi|218548046|ref|YP_002381837.1| ribosomal RNA large subunit methyltransferase N [Escherichia
           fergusonii ATCC 35469]
 gi|254807182|sp|B7LKC1|RLMN_ESCF3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|218355587|emb|CAQ88198.1| putative Fe-S containing enzyme [Escherichia fergusonii ATCC 35469]
 gi|324113011|gb|EGC06987.1| cfr family protein radical SAM enzyme [Escherichia fergusonii B253]
 gi|325496450|gb|EGC94309.1| ribosomal RNA large subunit methyltransferase N [Escherichia
           fergusonii ECD227]
          Length = 384

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N            R  L+            + I Y  
Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281


>gi|170767629|ref|ZP_02902082.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627]
 gi|170123963|gb|EDS92894.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627]
          Length = 384

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N            R  L+            + I Y  
Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281


>gi|281355197|ref|ZP_06241691.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Victivallis vadensis ATCC BAA-548]
 gi|281318077|gb|EFB02097.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Victivallis vadensis ATCC BAA-548]
          Length = 172

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 21/93 (22%)

Query: 26  FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F    GC              C+ C        G  G +Y+V+++   I    +      
Sbjct: 23  FV--QGCP-----------HHCKGCHNPETWAFGE-GCKYSVEEIHTRIRRNPLL----- 63

Query: 86  RYCVLTGGEPLLQV--DVPLIQALNKRGFEIAV 116
           R    +GGEP  Q      L + +   G+E+AV
Sbjct: 64  RGVTFSGGEPFSQAAELARLGRLVKADGYELAV 96


>gi|24113846|ref|NP_708356.1| hypothetical protein SF2563 [Shigella flexneri 2a str. 301]
 gi|30063909|ref|NP_838080.1| hypothetical protein S2735 [Shigella flexneri 2a str. 2457T]
 gi|110806448|ref|YP_689968.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
           5 str. 8401]
 gi|81723142|sp|Q83K42|RLMN_SHIFL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123342626|sp|Q0T202|RLMN_SHIF8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|24052937|gb|AAN44063.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30042165|gb|AAP17890.1| hypothetical protein S2735 [Shigella flexneri 2a str. 2457T]
 gi|110615996|gb|ABF04663.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|313651003|gb|EFS15403.1| UPF0063 protein yfgB [Shigella flexneri 2a str. 2457T]
          Length = 384

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N            R  L+            + I Y  
Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281


>gi|15832633|ref|NP_311406.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H7 str. Sakai]
 gi|168748424|ref|ZP_02773446.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756289|ref|ZP_02781296.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761127|ref|ZP_02786134.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768609|ref|ZP_02793616.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773569|ref|ZP_02798576.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778483|ref|ZP_02803490.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787863|ref|ZP_02812870.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC869]
 gi|168798888|ref|ZP_02823895.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC508]
 gi|195936659|ref|ZP_03082041.1| hypothetical protein EscherichcoliO157_09385 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808631|ref|ZP_03250968.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814380|ref|ZP_03255709.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820776|ref|ZP_03261096.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400754|ref|YP_002271987.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327135|ref|ZP_03443218.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           TW14588]
 gi|254794463|ref|YP_003079300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H7 str. TW14359]
 gi|261223051|ref|ZP_05937332.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259398|ref|ZP_05951931.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK966]
 gi|291283738|ref|YP_003500556.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str.
           CB9615]
 gi|205829862|sp|Q8XAA4|RLMN_ECO57 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807175|sp|B5Z0Y6|RLMN_ECO5E RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|13362849|dbj|BAB36802.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187770632|gb|EDU34476.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017093|gb|EDU55215.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4113]
 gi|189003147|gb|EDU72133.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356574|gb|EDU74993.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362276|gb|EDU80695.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368421|gb|EDU86837.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372335|gb|EDU90751.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC869]
 gi|189378598|gb|EDU97014.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC508]
 gi|208728432|gb|EDZ78033.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735657|gb|EDZ84344.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740899|gb|EDZ88581.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209162154|gb|ACI39587.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4115]
 gi|209763360|gb|ACI79992.1| hypothetical protein ECs3379 [Escherichia coli]
 gi|209763362|gb|ACI79993.1| hypothetical protein ECs3379 [Escherichia coli]
 gi|209763364|gb|ACI79994.1| hypothetical protein ECs3379 [Escherichia coli]
 gi|209763366|gb|ACI79995.1| hypothetical protein ECs3379 [Escherichia coli]
 gi|217319502|gb|EEC27927.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           TW14588]
 gi|254593863|gb|ACT73224.1| predicted enzyme [Escherichia coli O157:H7 str. TW14359]
 gi|290763611|gb|ADD57572.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str.
           CB9615]
 gi|320188850|gb|EFW63509.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H7 str. EC1212]
 gi|320640861|gb|EFX10349.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H7 str. G5101]
 gi|320657195|gb|EFX25004.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320662801|gb|EFX30133.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320667605|gb|EFX34520.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326340315|gb|EGD64119.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H7 str. 1125]
 gi|326344999|gb|EGD68743.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H7 str. 1044]
          Length = 384

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N            R  L+            + I Y  
Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281


>gi|194432102|ref|ZP_03064391.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012]
 gi|194419631|gb|EDX35711.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012]
 gi|332089738|gb|EGI94839.1| hypothetical protein SD15574_2919 [Shigella dysenteriae 155-74]
          Length = 384

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N            R  L+            + I Y  
Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281


>gi|193068396|ref|ZP_03049359.1| radical SAM enzyme, Cfr family [Escherichia coli E110019]
 gi|192958348|gb|EDV88788.1| radical SAM enzyme, Cfr family [Escherichia coli E110019]
          Length = 384

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N            R  L+            + I Y  
Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281


>gi|157161992|ref|YP_001459310.1| hypothetical protein EcHS_A2668 [Escherichia coli HS]
 gi|205829751|sp|A8A323|RLMN_ECOHS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157067672|gb|ABV06927.1| radical SAM enzyme, Cfr family [Escherichia coli HS]
          Length = 384

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N            R  L+            + I Y  
Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281


>gi|16130442|ref|NP_417012.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Escherichia
           coli str. K-12 substr. MG1655]
 gi|74313043|ref|YP_311462.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
           Ss046]
 gi|82544966|ref|YP_408913.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
           Sb227]
 gi|82777902|ref|YP_404251.1| hypothetical protein SDY_2713 [Shigella dysenteriae Sd197]
 gi|89109323|ref|AP_003103.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110]
 gi|91211843|ref|YP_541829.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           UTI89]
 gi|110642682|ref|YP_670412.1| hypothetical protein ECP_2522 [Escherichia coli 536]
 gi|117624746|ref|YP_853659.1| hypothetical protein APECO1_4007 [Escherichia coli APEC O1]
 gi|157157838|ref|YP_001463839.1| hypothetical protein EcE24377A_2801 [Escherichia coli E24377A]
 gi|170019200|ref|YP_001724154.1| hypothetical protein EcolC_1160 [Escherichia coli ATCC 8739]
 gi|170082127|ref|YP_001731447.1| hypothetical protein ECDH10B_2683 [Escherichia coli str. K-12
           substr. DH10B]
 gi|170683806|ref|YP_001744705.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           SMS-3-5]
 gi|187731368|ref|YP_001881308.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
           CDC 3083-94]
 gi|188491812|ref|ZP_02999082.1| radical SAM enzyme, Cfr family [Escherichia coli 53638]
 gi|191167679|ref|ZP_03029488.1| radical SAM enzyme, Cfr family [Escherichia coli B7A]
 gi|191172618|ref|ZP_03034157.1| radical SAM enzyme, Cfr family [Escherichia coli F11]
 gi|193064109|ref|ZP_03045194.1| radical SAM enzyme, Cfr family [Escherichia coli E22]
 gi|194427328|ref|ZP_03059878.1| radical SAM enzyme, Cfr family [Escherichia coli B171]
 gi|194437563|ref|ZP_03069659.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1]
 gi|209919994|ref|YP_002294078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           SE11]
 gi|215487867|ref|YP_002330298.1| hypothetical protein E2348C_2800 [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218555042|ref|YP_002387955.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           IAI1]
 gi|218559443|ref|YP_002392356.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           S88]
 gi|218690637|ref|YP_002398849.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           ED1a]
 gi|218696144|ref|YP_002403811.1| hypothetical protein EC55989_2802 [Escherichia coli 55989]
 gi|218701027|ref|YP_002408656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           IAI39]
 gi|237705027|ref|ZP_04535508.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
           3_2_53FAA]
 gi|238901682|ref|YP_002927478.1| putative enzyme [Escherichia coli BW2952]
 gi|253772589|ref|YP_003035420.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162491|ref|YP_003045599.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli B
           str. REL606]
 gi|256017335|ref|ZP_05431200.1| hypothetical protein ShiD9_00370 [Shigella sp. D9]
 gi|256021797|ref|ZP_05435662.1| hypothetical protein E4_00375 [Escherichia sp. 4_1_40B]
 gi|260845147|ref|YP_003222925.1| putative enzyme [Escherichia coli O103:H2 str. 12009]
 gi|260856611|ref|YP_003230502.1| putative enzyme [Escherichia coli O26:H11 str. 11368]
 gi|293410931|ref|ZP_06654507.1| cfr family radical SAM enzyme [Escherichia coli B354]
 gi|293446870|ref|ZP_06663292.1| cfr family radical SAM enzyme [Escherichia coli B088]
 gi|300817713|ref|ZP_07097928.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1]
 gi|300820813|ref|ZP_07100963.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7]
 gi|300904309|ref|ZP_07122166.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1]
 gi|300927120|ref|ZP_07142868.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1]
 gi|300930157|ref|ZP_07145578.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1]
 gi|300940232|ref|ZP_07154830.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1]
 gi|300951778|ref|ZP_07165593.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1]
 gi|300958853|ref|ZP_07170961.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1]
 gi|300998073|ref|ZP_07181933.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1]
 gi|301022377|ref|ZP_07186264.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1]
 gi|301024749|ref|ZP_07188389.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1]
 gi|301302874|ref|ZP_07209002.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1]
 gi|301330392|ref|ZP_07223034.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1]
 gi|301648272|ref|ZP_07248015.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1]
 gi|306814413|ref|ZP_07448575.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           NC101]
 gi|307139152|ref|ZP_07498508.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           H736]
 gi|307312488|ref|ZP_07592121.1| radical SAM enzyme, Cfr family [Escherichia coli W]
 gi|309784732|ref|ZP_07679365.1| UPF0063 protein yfgB [Shigella dysenteriae 1617]
 gi|309794436|ref|ZP_07688859.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7]
 gi|312965433|ref|ZP_07779665.1| UPF0063 protein yfgB [Escherichia coli 2362-75]
 gi|331643137|ref|ZP_08344272.1| radical SAM enzyme, Cfr family [Escherichia coli H736]
 gi|331648214|ref|ZP_08349304.1| radical SAM enzyme, Cfr family [Escherichia coli M605]
 gi|331653945|ref|ZP_08354946.1| radical SAM enzyme, Cfr family [Escherichia coli M718]
 gi|331658662|ref|ZP_08359606.1| radical SAM enzyme, Cfr family [Escherichia coli TA206]
 gi|331664080|ref|ZP_08364990.1| radical SAM enzyme, Cfr family [Escherichia coli TA143]
 gi|331669263|ref|ZP_08370111.1| radical SAM enzyme, Cfr family [Escherichia coli TA271]
 gi|331673972|ref|ZP_08374735.1| radical SAM enzyme, Cfr family [Escherichia coli TA280]
 gi|331678508|ref|ZP_08379183.1| radical SAM enzyme, Cfr family [Escherichia coli H591]
 gi|331684165|ref|ZP_08384761.1| radical SAM enzyme, Cfr family [Escherichia coli H299]
 gi|549552|sp|P36979|RLMN_ECOLI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123084401|sp|Q1R8L6|RLMN_ECOUT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123147826|sp|Q0TEW8|RLMN_ECOL5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123728531|sp|Q32D45|RLMN_SHIDS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123755559|sp|Q31XX3|RLMN_SHIBS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123773477|sp|Q3YZ35|RLMN_SHISS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829749|sp|A7ZPW0|RLMN_ECO24 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829750|sp|B1XAZ2|RLMN_ECODH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829752|sp|A1AE55|RLMN_ECOK1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829753|sp|B1IWE4|RLMN_ECOLC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829754|sp|B1LNH2|RLMN_ECOSM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829888|sp|B2TXU2|RLMN_SHIB3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807172|sp|B7UGW3|RLMN_ECO27 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807173|sp|B7MI02|RLMN_ECO45 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807174|sp|B7LDA9|RLMN_ECO55 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807176|sp|B7NRG7|RLMN_ECO7I RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807177|sp|B7N304|RLMN_ECO81 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807178|sp|B7M7M1|RLMN_ECO8A RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807180|sp|B6I589|RLMN_ECOSE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|259491986|sp|C4ZX92|RLMN_ECOBW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|493519|gb|AAA21359.1| unknown [Escherichia coli]
 gi|1788865|gb|AAC75570.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Escherichia
           coli str. K-12 substr. MG1655]
 gi|1799916|dbj|BAA16404.1| hypothetical protein [Escherichia coli str. K12 substr. W3110]
 gi|73856520|gb|AAZ89227.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81242050|gb|ABB62760.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|81246377|gb|ABB67085.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|91073417|gb|ABE08298.1| hypothetical protein UTI89_C2838 [Escherichia coli UTI89]
 gi|110344274|gb|ABG70511.1| hypothetical protein YfgB (putative Fe-S-cluster redox enzyme)
           [Escherichia coli 536]
 gi|115513870|gb|ABJ01945.1| putative Fe-S-cluster redox enzyme [Escherichia coli APEC O1]
 gi|157079868|gb|ABV19576.1| radical SAM enzyme, Cfr family [Escherichia coli E24377A]
 gi|169754128|gb|ACA76827.1| radical SAM enzyme, Cfr family [Escherichia coli ATCC 8739]
 gi|169889962|gb|ACB03669.1| predicted enzyme [Escherichia coli str. K-12 substr. DH10B]
 gi|170521524|gb|ACB19702.1| radical SAM enzyme, Cfr family [Escherichia coli SMS-3-5]
 gi|187428360|gb|ACD07634.1| radical SAM enzyme, Cfr family [Shigella boydii CDC 3083-94]
 gi|188487011|gb|EDU62114.1| radical SAM enzyme, Cfr family [Escherichia coli 53638]
 gi|190902278|gb|EDV62018.1| radical SAM enzyme, Cfr family [Escherichia coli B7A]
 gi|190907091|gb|EDV66691.1| radical SAM enzyme, Cfr family [Escherichia coli F11]
 gi|192929344|gb|EDV82953.1| radical SAM enzyme, Cfr family [Escherichia coli E22]
 gi|194414649|gb|EDX30921.1| radical SAM enzyme, Cfr family [Escherichia coli B171]
 gi|194423369|gb|EDX39360.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1]
 gi|209913253|dbj|BAG78327.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|215265939|emb|CAS10348.1| predicted enzyme [Escherichia coli O127:H6 str. E2348/69]
 gi|218352876|emb|CAU98675.1| putative Fe-S containing enzyme [Escherichia coli 55989]
 gi|218361810|emb|CAQ99409.1| putative Fe-S containing enzyme [Escherichia coli IAI1]
 gi|218366212|emb|CAR03960.1| putative Fe-S containing enzyme [Escherichia coli S88]
 gi|218371013|emb|CAR18841.1| putative Fe-S containing enzyme [Escherichia coli IAI39]
 gi|218428201|emb|CAV17847.1| putative Fe-S containing enzyme [Escherichia coli ED1a]
 gi|222034228|emb|CAP76969.1| UPF0063 protein yfgB [Escherichia coli LF82]
 gi|226901393|gb|EEH87652.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
           3_2_53FAA]
 gi|238862352|gb|ACR64350.1| predicted enzyme [Escherichia coli BW2952]
 gi|242378115|emb|CAQ32888.1| 23S rRNA m[2]A2503 methyltransferase [Escherichia coli BL21(DE3)]
 gi|253323633|gb|ACT28235.1| radical SAM enzyme, Cfr family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974392|gb|ACT40063.1| predicted enzyme [Escherichia coli B str. REL606]
 gi|253978559|gb|ACT44229.1| predicted enzyme [Escherichia coli BL21(DE3)]
 gi|257755260|dbj|BAI26762.1| predicted enzyme [Escherichia coli O26:H11 str. 11368]
 gi|257760294|dbj|BAI31791.1| predicted enzyme [Escherichia coli O103:H2 str. 12009]
 gi|260448403|gb|ACX38825.1| radical SAM enzyme, Cfr family [Escherichia coli DH1]
 gi|281179571|dbj|BAI55901.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|284922467|emb|CBG35554.1| radical SAM superfamily protein [Escherichia coli 042]
 gi|291323700|gb|EFE63128.1| cfr family radical SAM enzyme [Escherichia coli B088]
 gi|291471399|gb|EFF13883.1| cfr family radical SAM enzyme [Escherichia coli B354]
 gi|294492482|gb|ADE91238.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli IHE3034]
 gi|299881276|gb|EFI89487.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1]
 gi|300304052|gb|EFJ58572.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1]
 gi|300314505|gb|EFJ64289.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1]
 gi|300396418|gb|EFJ79956.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1]
 gi|300403741|gb|EFJ87279.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1]
 gi|300416890|gb|EFK00201.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1]
 gi|300448975|gb|EFK12595.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1]
 gi|300454928|gb|EFK18421.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1]
 gi|300461963|gb|EFK25456.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1]
 gi|300526566|gb|EFK47635.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7]
 gi|300529701|gb|EFK50763.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1]
 gi|300841809|gb|EFK69569.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1]
 gi|300843621|gb|EFK71381.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1]
 gi|301073659|gb|EFK88465.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1]
 gi|305851807|gb|EFM52259.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           NC101]
 gi|306907411|gb|EFN37915.1| radical SAM enzyme, Cfr family [Escherichia coli W]
 gi|307625927|gb|ADN70231.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           UM146]
 gi|308121892|gb|EFO59154.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7]
 gi|308927102|gb|EFP72576.1| UPF0063 protein yfgB [Shigella dysenteriae 1617]
 gi|309702849|emb|CBJ02180.1| radical SAM superfamily protein [Escherichia coli ETEC H10407]
 gi|312289853|gb|EFR17741.1| UPF0063 protein yfgB [Escherichia coli 2362-75]
 gi|312947094|gb|ADR27921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315061836|gb|ADT76163.1| radical SAM protein [Escherichia coli W]
 gi|315137141|dbj|BAJ44300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           DH1]
 gi|315256537|gb|EFU36505.1| radical SAM enzyme, Cfr family [Escherichia coli MS 85-1]
 gi|315288069|gb|EFU47469.1| radical SAM enzyme, Cfr family [Escherichia coli MS 110-3]
 gi|315300476|gb|EFU59705.1| radical SAM enzyme, Cfr family [Escherichia coli MS 16-3]
 gi|315615776|gb|EFU96408.1| UPF0063 protein yfgB [Escherichia coli 3431]
 gi|320175080|gb|EFW50193.1| Ribosomal RNA large subunit methyltransferase N [Shigella
           dysenteriae CDC 74-1112]
 gi|320180507|gb|EFW55438.1| Ribosomal RNA large subunit methyltransferase N [Shigella boydii
           ATCC 9905]
 gi|320185217|gb|EFW59997.1| Ribosomal RNA large subunit methyltransferase N [Shigella flexneri
           CDC 796-83]
 gi|320196354|gb|EFW70978.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
           WV_060327]
 gi|320200081|gb|EFW74670.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
           EC4100B]
 gi|323156172|gb|EFZ42331.1| hypothetical protein ECEPECA14_1949 [Escherichia coli EPECa14]
 gi|323159387|gb|EFZ45372.1| hypothetical protein ECE128010_4438 [Escherichia coli E128010]
 gi|323169039|gb|EFZ54716.1| hypothetical protein SS53G_0580 [Shigella sonnei 53G]
 gi|323170210|gb|EFZ55863.1| hypothetical protein ECLT68_5098 [Escherichia coli LT-68]
 gi|323184422|gb|EFZ69797.1| hypothetical protein ECOK1357_2143 [Escherichia coli 1357]
 gi|323188365|gb|EFZ73657.1| hypothetical protein ECRN5871_3471 [Escherichia coli RN587/1]
 gi|323377583|gb|ADX49851.1| radical SAM enzyme, Cfr family [Escherichia coli KO11]
 gi|323936410|gb|EGB32700.1| cfr family protein radical SAM enzyme [Escherichia coli E1520]
 gi|323941221|gb|EGB37406.1| cfr family protein radical SAM enzyme [Escherichia coli E482]
 gi|323944739|gb|EGB40806.1| cfr family protein radical SAM enzyme [Escherichia coli H120]
 gi|323949177|gb|EGB45068.1| cfr family protein radical SAM enzyme [Escherichia coli H252]
 gi|323955758|gb|EGB51516.1| cfr family protein radical SAM enzyme [Escherichia coli H263]
 gi|323961333|gb|EGB56945.1| cfr family protein radical SAM enzyme [Escherichia coli H489]
 gi|323967965|gb|EGB63377.1| cfr family protein radical SAM enzyme [Escherichia coli M863]
 gi|323971070|gb|EGB66318.1| cfr family protein radical SAM enzyme [Escherichia coli TA007]
 gi|323977300|gb|EGB72386.1| cfr family protein radical SAM enzyme [Escherichia coli TW10509]
 gi|324008525|gb|EGB77744.1| radical SAM enzyme, Cfr family [Escherichia coli MS 57-2]
 gi|324011226|gb|EGB80445.1| radical SAM enzyme, Cfr family [Escherichia coli MS 60-1]
 gi|324020077|gb|EGB89296.1| radical SAM enzyme, Cfr family [Escherichia coli MS 117-3]
 gi|324118139|gb|EGC12036.1| cfr family protein radical SAM enzyme [Escherichia coli E1167]
 gi|327252224|gb|EGE63896.1| hypothetical protein ECSTEC7V_3072 [Escherichia coli STEC_7v]
 gi|330912292|gb|EGH40802.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           AA86]
 gi|331039935|gb|EGI12155.1| radical SAM enzyme, Cfr family [Escherichia coli H736]
 gi|331043074|gb|EGI15214.1| radical SAM enzyme, Cfr family [Escherichia coli M605]
 gi|331048794|gb|EGI20870.1| radical SAM enzyme, Cfr family [Escherichia coli M718]
 gi|331054327|gb|EGI26354.1| radical SAM enzyme, Cfr family [Escherichia coli TA206]
 gi|331059879|gb|EGI31856.1| radical SAM enzyme, Cfr family [Escherichia coli TA143]
 gi|331064457|gb|EGI36368.1| radical SAM enzyme, Cfr family [Escherichia coli TA271]
 gi|331069245|gb|EGI40637.1| radical SAM enzyme, Cfr family [Escherichia coli TA280]
 gi|331074968|gb|EGI46288.1| radical SAM enzyme, Cfr family [Escherichia coli H591]
 gi|331079117|gb|EGI50319.1| radical SAM enzyme, Cfr family [Escherichia coli H299]
 gi|332092803|gb|EGI97872.1| hypothetical protein SB359474_2930 [Shigella boydii 3594-74]
 gi|332100682|gb|EGJ04028.1| ribosomal RNA large subunit methyltransferase N [Shigella sp. D9]
          Length = 384

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 235

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N            R  L+            + I Y  
Sbjct: 236 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 281


>gi|296284245|ref|ZP_06862243.1| molybdenum cofactor biosynthesis protein [Citromicrobium
           bathyomarinum JL354]
          Length = 346

 Score = 37.7 bits (87), Expect = 0.93,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 13/88 (14%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C    +  +     +  V  L +L         +  R   LTGGEPL++ D
Sbjct: 37  DRCDLRCTYC----MPERMQFLPKAEVLSLEELYVLACSFMARGVRTIRLTGGEPLVRRD 92

Query: 101 VPLIQALNKRGFEIAVE-------TNGT 121
           V  I  +   G  +  E       TNGT
Sbjct: 93  V--IDLVRAIGRHVGSELDEVTLTTNGT 118


>gi|229151763|ref|ZP_04279963.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1550]
 gi|228631690|gb|EEK88319.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1550]
          Length = 307

 Score = 37.7 bits (87), Expect = 0.93,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+  +P LI+ LNK  G E I +
Sbjct: 14  SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPKLIERLNKIDGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVS 134
            TNG++      D        + VS
Sbjct: 71  TTNGSLLKKFAPDLYKAGLSRVTVS 95


>gi|116625479|ref|YP_827635.1| GTP cyclohydrolase subunit MoaA [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228641|gb|ABJ87350.1| GTP cyclohydrolase subunit MoaA [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 331

 Score = 37.7 bits (87), Expect = 0.93,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           DR + +C +C  +T    ++  +    + +++   +      G ++ R   +TGGEPLL+
Sbjct: 23  DRCNIRCFYCMPETGVTFVE--RREILDFEEIERFVRVAAGLGIRKLR---VTGGEPLLR 77

Query: 99  VDVP-LIQAL-NKRGFE-IAVETNGTIEPPQG 127
            D+P LI  L    G + +A+ TNG +   Q 
Sbjct: 78  RDLPVLIGRLACIPGIQDLALTTNGVLLAEQA 109


>gi|170737079|ref|YP_001778339.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Burkholderia cenocepacia MC0-3]
 gi|169819267|gb|ACA93849.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Burkholderia cenocepacia MC0-3]
          Length = 386

 Score = 37.7 bits (87), Expect = 0.94,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 22/119 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +V++    ++E             +
Sbjct: 38  CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
            GGEPLL  ++P +++ + KR   + + TN  +   + +D    SP     + + G +E
Sbjct: 79  AGGEPLLHKEMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYQPSPYFVWSVHLDGDKE 136


>gi|238927629|ref|ZP_04659389.1| possible anaerobic ribonucleotide reductase small subunit
           [Selenomonas flueggei ATCC 43531]
 gi|238884554|gb|EEQ48192.1| possible anaerobic ribonucleotide reductase small subunit
           [Selenomonas flueggei ATCC 43531]
          Length = 175

 Score = 37.7 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 30/105 (28%)

Query: 15  GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLA 71
           GEG    R+ VF    GC             +C  C   DT         G    VD + 
Sbjct: 24  GEGI---RLTVF--TQGCP-----------RRCPGCHNPDTQ----PMDGGRITTVDAVL 63

Query: 72  DLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
             ++   +          L+GGEP LQ    +PL +A ++RG ++
Sbjct: 64  QDLDANPLLTG-----LTLSGGEPFLQPAALLPLARAAHERGLDV 103


>gi|296123552|ref|YP_003631330.1| molybdenum cofactor biosynthesis protein A [Planctomyces
           limnophilus DSM 3776]
 gi|296015892|gb|ADG69131.1| molybdenum cofactor biosynthesis protein A [Planctomyces
           limnophilus DSM 3776]
          Length = 333

 Score = 37.7 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 10/85 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           DR + +C +C       +G      R ++    ++ E   I          LTGGEPL++
Sbjct: 20  DRCNIRCFYC-----MPEGPVQYLPRQHLLTYEEITELVKIFVSLGIDRVRLTGGEPLVR 74

Query: 99  VDVP-LIQALNKRG--FEIAVETNG 120
            D+P LI++L       +I + TNG
Sbjct: 75  QDLPVLIKSLKAIDGLVDIGLTTNG 99


>gi|228953836|ref|ZP_04115875.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229071066|ref|ZP_04204292.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus F65185]
 gi|229080773|ref|ZP_04213291.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock4-2]
 gi|229191655|ref|ZP_04318634.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC
           10876]
 gi|228591817|gb|EEK49657.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC
           10876]
 gi|228702507|gb|EEL54975.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock4-2]
 gi|228712006|gb|EEL63955.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus F65185]
 gi|228805804|gb|EEM52384.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 307

 Score = 37.7 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+  +P LI+ LNK  G E I +
Sbjct: 14  SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPKLIERLNKIDGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVS 134
            TNG++      D        + VS
Sbjct: 71  TTNGSLLKKFAPDLYKAGLSRVTVS 95


>gi|261490661|ref|NP_001159769.1| molybdenum cofactor biosynthesis protein 1 isoform a [Bos taurus]
 gi|226707542|sp|Q1JQD7|MOCS1_BOVIN RecName: Full=Molybdenum cofactor biosynthesis protein 1; Includes:
           RecName: Full=Molybdenum cofactor biosynthesis protein
           A; Includes: RecName: Full=Molybdenum cofactor
           biosynthesis protein C
 gi|296474489|gb|DAA16604.1| molybdenum cofactor biosynthesis protein 1 isoform a [Bos taurus]
          Length = 633

 Score = 37.7 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +       K      +++  L       G  + R   LT
Sbjct: 77  CNL-----------RCQYCMPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 122

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GGEPL++ D V ++  L +  G   I + TNG
Sbjct: 123 GGEPLIRPDVVDIVAQLRQLEGLRTIGITTNG 154


>gi|169830805|ref|YP_001716787.1| molybdenum cofactor biosynthesis protein A [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637649|gb|ACA59155.1| molybdenum cofactor biosynthesis protein A [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 327

 Score = 37.7 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 19/99 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C          K    +   L  L+           R   LT
Sbjct: 23  CNL-----------NCFYC-----RPGEQKTPTVDGLPLESLMRVIRAGARVGIRKIRLT 66

Query: 92  GGEPLLQVD-VPLIQALNKRGF--EIAVETNGTIEPPQG 127
           GGEPL++ D +P++ ALN+     +IA+ TNG++  P+ 
Sbjct: 67  GGEPLVRPDVIPVVAALNEIPQIDDIALTTNGSLLAPRA 105


>gi|146351232|ref|YP_001210459.1| molybdenum cofactor biosynthesis protein A [Arthrobacter
           nitroguajacolicus]
 gi|146218796|emb|CAL09868.1| putative MoaA-like protein [Arthrobacter nitroguajacolicus]
          Length = 376

 Score = 37.7 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 27/110 (24%)

Query: 21  GRVAVFCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL--ADLIE 75
           GR A   R S    CNL           +C +C      +        +   +  A+ I+
Sbjct: 39  GRRATDMRLSLTDKCNL-----------RCTYC------MPAEGMEWLSKQAVMSAEEIQ 81

Query: 76  EQWITGEK--EGRYCVLTGGEPLL-QVDVPLIQALNKRG--FEIAVETNG 120
                G      R   LTGGEPL+    + +I +L +      I++ TNG
Sbjct: 82  RIVRVGVHFLGVRELRLTGGEPLVRADLLDIISSLRQAHPELPISMTTNG 131


>gi|72161752|ref|YP_289409.1| molybdenum cofactor biosynthesis protein A [Thermobifida fusca YX]
 gi|71915484|gb|AAZ55386.1| GTP cyclohydrolase subunit MoaA [Thermobifida fusca YX]
          Length = 329

 Score = 37.7 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 16/106 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C                 D++  LI       +   R    TGGEPLL+  
Sbjct: 19  DRCNLRCTYCMPPEGLDWLPTPELLTDDEVIRLIR--IGVTQLGIREVRFTGGEPLLRRG 76

Query: 101 VP----LIQALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134
           +P       AL+ R   IA+ TNG        T+    G+D + VS
Sbjct: 77  LPSIVAATAALDPRP-RIALTTNGIGLNRIAPTL-AEAGLDRVNVS 120


>gi|34499341|ref|NP_903556.1| Fe-S oxidoreductase [Chromobacterium violaceum ATCC 12472]
 gi|34105191|gb|AAQ61547.1| probable Fe-S oxidoreductase [Chromobacterium violaceum ATCC 12472]
          Length = 337

 Score = 37.7 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 23/129 (17%)

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGTI 122
           +   + + +L  +    G       V+TGGEPL ++    ++ A++     + V++NG  
Sbjct: 54  KMEYEDIRNLSRQADELGLARF---VITGGEPLVMKDLDDVVAAIDPEKHYVIVDSNG-- 108

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLV-FPQVNVSPENYIGFDFERFSLQPMDGPFL 181
                  W          L ++  + LK +   ++ +S ++++  D + F  +P     +
Sbjct: 109 -------WF---------LDLERAKHLKSIGVEKIQLSLDSFVEKDHDNFRNKPGSYKRV 152

Query: 182 EENTNLAIS 190
               +  + 
Sbjct: 153 IRAVDACLD 161


>gi|86157298|ref|YP_464083.1| radical SAM family protein [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773809|gb|ABC80646.1| Radical SAM [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 357

 Score = 37.7 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 19/123 (15%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         +           G   T   R        ++EE    G         T
Sbjct: 34  CNLACAMCPCGAARA--------RGEPRTPPRRMAPALALGVLEE--RRGSPLRELIPST 83

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
            GEPLL   +P L+      G    V TNGT        W         ++ +   +++K
Sbjct: 84  MGEPLLWPALPDLLARAAALGIRGNVTTNGTFPGRGAAGW--------AEVLVPACRDVK 135

Query: 151 LVF 153
           + +
Sbjct: 136 VSW 138


>gi|256842171|ref|ZP_05547676.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298374964|ref|ZP_06984921.1| molybdenum cofactor biosynthesis protein [Bacteroides sp. 3_1_19]
 gi|256736487|gb|EEU49816.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298267464|gb|EFI09120.1| molybdenum cofactor biosynthesis protein [Bacteroides sp. 3_1_19]
          Length = 358

 Score = 37.7 bits (87), Expect = 0.96,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCVLTG- 92
                   + +C +C   +V  Q  K  +  Y     + + +           Y  +TG 
Sbjct: 7   CLVPDSFCNFKCSYC---YVQQQARKSKKRIYTQYSPSYIAKALSPDRLGGVSYISITGL 63

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
           GE L+Q  V  ++  + K G  + + TNGT++
Sbjct: 64  GETLIQEKVVQIVHEILKTGNYVNITTNGTLD 95


>gi|302876467|ref|YP_003845100.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307687137|ref|ZP_07629583.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302579324|gb|ADL53336.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
          Length = 371

 Score = 37.7 bits (87), Expect = 0.96,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 58/168 (34%), Gaps = 30/168 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C T             +  Q   +IE+    G +       T
Sbjct: 53  CNL-----------ACPHCYTAAANSDQFVPE-LSTAQCYKIIEDIARLGVE---IIGWT 97

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
           GGEPLL+ D+  LI      G    + TNG +          +S      LK  G + ++
Sbjct: 98  GGEPLLRNDLEDLIAYAKSFGIRSGLTTNGLL----------LSESRAKSLKDAGLEIVQ 147

Query: 151 LVF----PQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
           +      P  N      +  DFE      ++   L  NTNLA+  C +
Sbjct: 148 VSLDGSTPARNAKIRKCLESDFEIVLNGALNSQKLGMNTNLAMLLCSE 195


>gi|170760513|ref|YP_001787335.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum
           A3 str. Loch Maree]
 gi|226704814|sp|B1KU20|MOAA_CLOBM RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|169407502|gb|ACA55913.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 319

 Score = 37.7 bits (87), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +C +C      ++         +++  +++   + G  + R+   TG
Sbjct: 10  NYLRVSVTDRCNLRCVYCMPPEGIVKKEHDNIMRYEEIFKVVKSASLLGVNKIRF---TG 66

Query: 93  GEPLLQVDV 101
           GEPL+  ++
Sbjct: 67  GEPLILKNI 75


>gi|326939860|gb|AEA15756.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 306

 Score = 37.7 bits (87), Expect = 0.97,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 53  DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-R 110
           D+  ++         D++  L       G  + R   LTGGEPLL+ D+P LI  L K  
Sbjct: 9   DYAFLKEEL--LLTFDEIERLARLFISMGVNKIR---LTGGEPLLRKDLPTLIARLAKLE 63

Query: 111 GFE-IAVETNG 120
           G + I + TNG
Sbjct: 64  GLKDIGLTTNG 74


>gi|320011639|gb|ADW06489.1| Radical SAM domain protein [Streptomyces flavogriseus ATCC 33331]
          Length = 742

 Score = 37.7 bits (87), Expect = 0.97,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 42/121 (34%), Gaps = 22/121 (18%)

Query: 42  RLSAQCRF-CDTDFVGIQGTKGGRYNVDQLAD--------LIEEQWITGEKEGRYCVLTG 92
           ++ ++C   CD  ++     +  R     ++D         + E       +    +L G
Sbjct: 14  KVHSRCDLACDHCYIYEHADQSWRTRPKTISDEAISWTARRLAEHASAHALDSMSVILHG 73

Query: 93  GEPLLQ-------VDVPLIQALN---KRGFEIAVETNGTIEPPQGIDWIC-VSPKAGCDL 141
           GEPLL        V   L  ALN   +    I   TNG    P+ +D       K G  L
Sbjct: 74  GEPLLAGPARLRRVCEELTAALNGIAELDLRIH--TNGVQLSPRYLDLFDEFDVKVGISL 131

Query: 142 K 142
            
Sbjct: 132 D 132


>gi|254167198|ref|ZP_04874051.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|197624054|gb|EDY36616.1| radical SAM domain protein [Aciduliprofundum boonei T469]
          Length = 356

 Score = 37.7 bits (87), Expect = 0.97,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 40/192 (20%)

Query: 25  VFCRFSG-CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           +F   +G CNL            CR+C        G+        ++   IE+     EK
Sbjct: 5   IF--LTGVCNL-----------NCRYC-------GGSIPEEVMPHEIQYSIEDLKNFVEK 44

Query: 84  EGRYCV-LTGGEPLL--QVDVPLIQALNKRGFEIAVETNG--TIEPPQG----IDWICVS 134
           +    +   GGEPLL  +    ++  +  + F +   TNG    + P+     ID I VS
Sbjct: 45  DKDAIIAFYGGEPLLRIEKMKEIMDNIQAKRFVVQ--TNGFFLHKIPEEYLNRIDAILVS 102

Query: 135 ----PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAIS 190
               P+     +  G  E+  V  +V    E Y G    R ++      + +    L++ 
Sbjct: 103 IDGVPEVTNYYRGNGVYEI--VVDRVRKIREKYKGDLIARMAVSEESDIYRDVMHILSLP 160

Query: 191 YCFQNPKWRLSV 202
           +   +  W+L+V
Sbjct: 161 F--DHVHWQLNV 170


>gi|148691685|gb|EDL23632.1| molybdenum cofactor synthesis 1, isoform CRA_b [Mus musculus]
          Length = 449

 Score = 37.7 bits (87), Expect = 0.97,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +       K      +++  L       G  + R   LT
Sbjct: 80  CNL-----------RCQYCMPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 125

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GGEPL++ D V ++  L+   G   I + TNG
Sbjct: 126 GGEPLIRPDVVDIVARLHGLEGLRTIGLTTNG 157


>gi|301060224|ref|ZP_07201091.1| hopanoid biosynthesis associated radical SAM protein HpnH [delta
           proteobacterium NaphS2]
 gi|300445736|gb|EFK09634.1| hopanoid biosynthesis associated radical SAM protein HpnH [delta
           proteobacterium NaphS2]
          Length = 338

 Score = 37.7 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C+ C       +     R +  +    +EE             + 
Sbjct: 40  CNL-----------RCKGCG-KIAYPKEILEKRMSPSECMAAVEECG------APVVSIA 81

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+   +P +++    R   + + TN  +   + I     SP    ++ +    +
Sbjct: 82  GGEPLMHRQLPEIVRGFAHRKKFVYLCTN-ALLVQKRIHEFEPSPYLTFNVHLDALDD 138


>gi|300725846|ref|ZP_07059312.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Prevotella bryantii B14]
 gi|299776893|gb|EFI73437.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Prevotella bryantii B14]
          Length = 164

 Score = 37.7 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 27/103 (26%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           +GC              C  C         T G   + + +  +I+              
Sbjct: 25  AGCP-----------NACSGCHNPQSW-DITAGHEMSTEDIMKIIKA------DPYANVT 66

Query: 90  LTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
            +GG+P+ Q +    L +A+ K       ETN TI    G  +
Sbjct: 67  FSGGDPMFQPEGFAELAEAIRK-------ETNKTIWCFSGFTY 102


>gi|229075463|ref|ZP_04208452.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock4-18]
 gi|228707712|gb|EEL59896.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock4-18]
          Length = 307

 Score = 37.7 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+  +P LI+ LNK  G E I +
Sbjct: 14  SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPELIERLNKIDGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVS 134
            TNG++      D        + VS
Sbjct: 71  TTNGSLLKKFAPDLYKAGLSRVTVS 95


>gi|220915987|ref|YP_002491291.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953841|gb|ACL64225.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 337

 Score = 37.7 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 19/88 (21%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR + +C +C         +       D L    ++     +      R   LTGGEP L
Sbjct: 35  DRCNFRCTYC---------SPAEHEAPDALLQRPEIARLVRVFAGLGVRRVRLTGGEPTL 85

Query: 98  QVDVPLIQALNKR----GF-EIAVETNG 120
           + D  L++ +       G  E+A+ TNG
Sbjct: 86  RKD--LVEIVADAAATPGIEEVALTTNG 111


>gi|197121283|ref|YP_002133234.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter sp. K]
 gi|196171132|gb|ACG72105.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter sp. K]
          Length = 337

 Score = 37.7 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 19/88 (21%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR + +C +C         +       D L    ++     +      R   LTGGEP L
Sbjct: 35  DRCNFRCTYC---------SPAEHEAPDALLQRPEIARLVRVFAGLGVRRVRLTGGEPTL 85

Query: 98  QVDVPLIQALNKR----GF-EIAVETNG 120
           + D  L++ +       G  E+A+ TNG
Sbjct: 86  RKD--LVEIVADAAATPGIEEVALTTNG 111


>gi|55379648|ref|YP_137498.1| tRNA-modifying enzyme [Haloarcula marismortui ATCC 43049]
 gi|55232373|gb|AAV47792.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 326

 Score = 37.7 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 21/105 (20%)

Query: 38  REQDRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWIT--------------- 80
               + + +C FC  D  G     G     +   +AD   E                   
Sbjct: 57  TPVVKCNERCVFCWRDHAGHAYELGDVEWDDPAAVADASVELQRKLLSGFGGNDEVPREV 116

Query: 81  --GEKEGRYCVLT-GGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
                E R+  ++  GEP L   +P LI+  + R     + +NGT
Sbjct: 117 FDQAMEPRHVAISLDGEPTLYPHLPELIEEFHDRDITTFLVSNGT 161


>gi|90423233|ref|YP_531603.1| radical SAM family protein [Rhodopseudomonas palustris BisB18]
 gi|90105247|gb|ABD87284.1| Radical SAM [Rhodopseudomonas palustris BisB18]
          Length = 383

 Score = 37.7 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 22/119 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R    +  D  EE             +
Sbjct: 38  CNL-----------ACVGCGKIDY--PDAILNRRMTAQECWDAAEECG------APMVAI 78

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
            GGEPL+  ++  +++ L +R   +++ TN  +   + +     SP     + + G +E
Sbjct: 79  PGGEPLIHKEIGEIVRGLVERKKFVSLCTN-ALLLEKKLHLFEPSPYLFFSVHLDGMKE 136


>gi|55821919|ref|YP_140361.1| hypothetical protein stu1951 [Streptococcus thermophilus LMG 18311]
 gi|55823837|ref|YP_142278.1| hypothetical protein str1951 [Streptococcus thermophilus CNRZ1066]
 gi|55737904|gb|AAV61546.1| conserved hypothetical protein [Streptococcus thermophilus LMG
           18311]
 gi|55739822|gb|AAV63463.1| conserved hypothetical protein [Streptococcus thermophilus
           CNRZ1066]
          Length = 424

 Score = 37.7 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 20/97 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCV 89
           CNL            C +C   +             ++    ++I+E    G  +    +
Sbjct: 78  CNL-----------SCSYC---YADGGNYGMDNRIMDLTTADNIIQEIASKGVTQINRLI 123

Query: 90  LTGGEPLLQVDV--PLIQALNKRGFEIAVE--TNGTI 122
           L GGEP L +++    I+ L+     + +E  TNGT+
Sbjct: 124 LFGGEPFLNIELFIYFIEKLSTLLNVVKIETVTNGTV 160


>gi|229140181|ref|ZP_04268739.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           BDRD-ST26]
 gi|228643267|gb|EEK99540.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           BDRD-ST26]
          Length = 307

 Score = 37.7 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+  +P LI+ LNK  G E I +
Sbjct: 14  SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPQLIERLNKIDGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVS 134
            TNG++      D        + VS
Sbjct: 71  TTNGSLLKKFAPDLYKAGLSRVTVS 95


>gi|229157139|ref|ZP_04285219.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC
           4342]
 gi|228626203|gb|EEK82950.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC
           4342]
          Length = 307

 Score = 37.7 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+  +P LI+ LNK  G E I +
Sbjct: 14  SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPQLIERLNKIDGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVS 134
            TNG++      D        + VS
Sbjct: 71  TTNGSLLKKFAPDLYKAGLSRVTVS 95


>gi|300694498|ref|YP_003750471.1| radical_sam domain [Ralstonia solanacearum PSI07]
 gi|299076535|emb|CBJ35860.1| conserved hypothethical protein, radical_SAM domain [Ralstonia
           solanacearum PSI07]
          Length = 398

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 29/117 (24%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN--------VDQLADLIEEQWITG 81
             CNL            C +C   +V  +G    +          +D+LA+ I E     
Sbjct: 28  QRCNL-----------DCTYC---YVYNRGDDSWKTRLPVISDRVIDKLAERINEHCARF 73

Query: 82  EKEGRYCVLTGGEPLL---QVDVPLIQALNKR----GFEIAVETNGTIEPPQGIDWI 131
             +     + GGEPLL   +    ++  L  +         ++TNG +   + ID +
Sbjct: 74  ALQSFTIEIHGGEPLLLGKRRMREMVDRLRSQVDATHLRFTMQTNGLLLDSEWIDLL 130


>gi|229104098|ref|ZP_04234772.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock3-28]
 gi|228679305|gb|EEL33508.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock3-28]
          Length = 307

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+  +P LI+ LNK  G E I +
Sbjct: 14  SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPELIERLNKIDGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVS 134
            TNG++      D        + VS
Sbjct: 71  TTNGSLLKKFAPDLYKAGLSRVTVS 95


>gi|229098012|ref|ZP_04228962.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock3-29]
 gi|229117031|ref|ZP_04246413.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock1-3]
 gi|228666435|gb|EEL21895.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock1-3]
 gi|228685449|gb|EEL39377.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock3-29]
          Length = 307

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+  +P LI+ LNK  G E I +
Sbjct: 14  SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPELIERLNKIDGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVS 134
            TNG++      D        + VS
Sbjct: 71  TTNGSLLKKFAPDLYKAGLSRVTVS 95


>gi|254511606|ref|ZP_05123673.1| radical SAM domain protein [Rhodobacteraceae bacterium KLH11]
 gi|221535317|gb|EEE38305.1| radical SAM domain protein [Rhodobacteraceae bacterium KLH11]
          Length = 317

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 8/89 (8%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCVLT 91
           LW        + +C  C   ++    T         D++ D +++         R    T
Sbjct: 37  LWFNT-GTLCNIECVNC---YIASSPTNDALVYITTDEVRDYLDQIQERNW-PIREIGFT 91

Query: 92  GGEPLLQV-DVPLIQALNKRGFEIAVETN 119
           GGEP +    + + +A  +RG+E+ + TN
Sbjct: 92  GGEPFMNPQMIDMTRAALERGYEVLILTN 120


>gi|254466079|ref|ZP_05079490.1| coenzyme PQQ biosynthesis protein E [Rhodobacterales bacterium Y4I]
 gi|206686987|gb|EDZ47469.1| coenzyme PQQ biosynthesis protein E [Rhodobacterales bacterium Y4I]
          Length = 361

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 16/125 (12%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R    C +C      +           + AD   +    G  +     L+GGEP  + D+
Sbjct: 16  RCPLACPYCSNPQDLLGRE--AEMTTAEWADAFRQAAELGVLQLH---LSGGEPAARPDL 70

Query: 102 P-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP 160
             L  A    G    + T+G          I ++PK    L+  G   ++L     N   
Sbjct: 71  ADLTAAARGCGLYTNLITSG----------IGLTPKRLDALEAAGLDHIQLSLQGTNAEL 120

Query: 161 ENYIG 165
            ++IG
Sbjct: 121 ADWIG 125


>gi|117927989|ref|YP_872540.1| coproporphyrinogen III oxidase, anaerobic [Acidothermus
           cellulolyticus 11B]
 gi|117648452|gb|ABK52554.1| coproporphyrinogen III oxidase, anaerobic [Acidothermus
           cellulolyticus 11B]
          Length = 400

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 18/99 (18%)

Query: 44  SAQCRFCD--TDFVGIQGTKGGRYNV--DQLADL-IEEQWITGEKEGRYCVLTGGEPLLQ 98
           +A+C +CD  T      G    R     D +A+L +  ++++G+   +     GG P L 
Sbjct: 36  AARCGYCDFNTYTAAELGGHASRLTFVHDAIAELRMARRFLSGDAVVQTVFFGGGTPTLL 95

Query: 99  VDVPLIQAL--------NKRGFEIAVETNGTIEPPQGID 129
               LI+ L           G E+ VE N     P+ +D
Sbjct: 96  PAAHLIEILRVIDGEFGLAAGAEVTVEAN-----PESVD 129


>gi|320353735|ref|YP_004195074.1| Radical SAM domain-containing protein [Desulfobulbus propionicus
           DSM 2032]
 gi|320122237|gb|ADW17783.1| Radical SAM domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 469

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 21/117 (17%)

Query: 30  SGCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE 75
           +GC    G   D              R + +C  C   F     +        +  +   
Sbjct: 79  AGCPHDCGLCPDHGQHTCTALIEITARCNLRCPVC---FAAAGASGADDDPSLERIEFFY 135

Query: 76  EQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGF-EIAVETNGTIEPPQGIDW 130
           ++ +          L+GGEP ++ D+  I AL   +GF  I + TNG +   +  D+
Sbjct: 136 DRILEASGPC-NIQLSGGEPTMRDDLDAIIALGRDKGFGFIQLNTNG-LRLAENPDY 190


>gi|295106643|emb|CBL04186.1| ribonucleoside-triphosphate reductase class III activase subunit
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 181

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 21/93 (22%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           AVF    GC           +  C  C       +        V  + DL+    I   K
Sbjct: 26  AVFV--QGC-----------THGCPGC----HNPESQPRAGGEVRAIDDLVA--HIAANK 66

Query: 84  EGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
             +   ++GGEP  Q      L +     G  +
Sbjct: 67  LAQGVTISGGEPFEQAAACAELARRCRALGLNV 99


>gi|294649161|ref|ZP_06726602.1| coproporphyrinogen dehydrogenase [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824959|gb|EFF83721.1| coproporphyrinogen dehydrogenase [Acinetobacter haemolyticus ATCC
           19194]
          Length = 384

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 40/115 (34%), Gaps = 14/115 (12%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIE----EQWITGEKEGRY 87
            L           +C +CD +      G          LA L+     +  +   +    
Sbjct: 10  PLSLYIHMPWCVRKCPYCDFNSHAVPDGHLSMDLEQQYLAALVADFETQIEMAQGRSIHS 69

Query: 88  CVLTGGEPLL---QVDVPLIQALNKR-GF----EIAVETN-GTIEPPQGIDWICV 133
             + GG P L   Q    L + L  R GF    EI +E N GT+E     D++ V
Sbjct: 70  VFIGGGTPSLISAQGYQWLFEQLKARLGFEADCEITLEANPGTVEHDPFADYLAV 124


>gi|126666042|ref|ZP_01737022.1| pyrroloquinoline quinone biosynthesis protein PqqE [Marinobacter
           sp. ELB17]
 gi|126629364|gb|EAZ99981.1| pyrroloquinoline quinone biosynthesis protein PqqE [Marinobacter
           sp. ELB17]
          Length = 385

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 19/114 (16%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   R   QC +C    DF   +       + +    ++ +    G  +  +  
Sbjct: 19  PLWLLAELTYRCPLQCPYCSNPLDFAQTE----RELSTEDWVKVLRQGREMGAAQLGF-- 72

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG---TIE-----PPQGIDWICVS 134
            +GGEPL+ Q    LI      G+   + T+G   T          G+D I VS
Sbjct: 73  -SGGEPLVRQDLQELIAEARHLGYYSNLITSGLGLTNAKVEAFASAGLDHIQVS 125


>gi|121604771|ref|YP_982100.1| radical SAM protein [Polaromonas naphthalenivorans CJ2]
 gi|205829800|sp|A1VNF1|RLMN_POLNA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|120593740|gb|ABM37179.1| 23S rRNA m(2)A-2503 methyltransferase [Polaromonas
           naphthalenivorans CJ2]
          Length = 382

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 12/100 (12%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLADL-IEEQWITGEKEGRYCVLTG 92
               Q   +  CRFC T   G     T G   +    A+  + +     E+     V+ G
Sbjct: 104 CISSQAGCAVGCRFCSTGHQGFSRNLTTGEIISQLWFAEHFLRKHLGRNERVISNVVMMG 163

Query: 93  -GEPLL---QVDVPLIQALNKRGF-----EIAVETNGTIE 123
            GEPL    Q+   L   LN  G+      + V T+G + 
Sbjct: 164 MGEPLQNYSQLLPALKVMLNDHGYGLSRRRVTVSTSGVVP 203


>gi|28210022|ref|NP_780966.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium tetani E88]
 gi|28202457|gb|AAO34903.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium tetani E88]
          Length = 169

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 21/97 (21%)

Query: 21  GRVAV-FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           G  +V F   SGCN            +C+ C  + +      G R  +D++ D ++    
Sbjct: 19  GLRSVLF--LSGCN-----------HKCKGC-HNLIMQDFKYGDRVKIDEIMDRVKGNIP 64

Query: 80  TGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEI 114
                 R    +GGEPL Q      L   + K    I
Sbjct: 65  I----IRGVTFSGGEPLEQAENLARLASMIKKENLNI 97


>gi|220919464|ref|YP_002494768.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957318|gb|ACL67702.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 338

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 59/186 (31%), Gaps = 22/186 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           ++     Q   +  C FC T  +G+  +      V QL  +        E+     V  G
Sbjct: 97  HVVCLSSQAGCALGCAFCATAKLGLDRSLRSWEMVAQLLAV----RADSERPITGVVFMG 152

Query: 93  -GEPLLQVDVPLIQ--ALNK-RG-----FEIAVETNGTIE------PPQGIDWICVSPKA 137
            GEP L  D  L    AL    G       I++ T G +              +C+S  A
Sbjct: 153 QGEPFLNYDEVLTAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGHKFRLCISLNA 212

Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-RFSLQP--MDGPFLEENTNLAISYCFQ 194
               K +    ++  FP   +            R +L+   + G  + E    A+     
Sbjct: 213 AMPWKRRALMPVEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGQLLA 272

Query: 195 NPKWRL 200
               RL
Sbjct: 273 GIPVRL 278


>gi|147676929|ref|YP_001211144.1| Fe-S oxidoreductases [Pelotomaculum thermopropionicum SI]
 gi|146273026|dbj|BAF58775.1| predicted Fe-S oxidoreductases [Pelotomaculum thermopropionicum SI]
          Length = 338

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C     G  G    R ++ ++   +++          Y  + 
Sbjct: 24  CNL-----------SCIHC---LAGSSGDGPDRLSMGEVRHFLDDLARMKVF---YINIG 66

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GGEPLL      ++    KR   +   TNGT+
Sbjct: 67  GGEPLLHPRFFDIVDYALKRDIYVQFSTNGTL 98


>gi|90417325|ref|ZP_01225251.1| pyrroloquinoline quinone biosynthesis protein PqqE [marine gamma
           proteobacterium HTCC2207]
 gi|90330910|gb|EAS46173.1| pyrroloquinoline quinone biosynthesis protein PqqE [marine gamma
           proteobacterium HTCC2207]
          Length = 401

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 33  NLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E       QC +C ++ +     +    + D+   + ++    G  +     L+
Sbjct: 16  PLWLLAELSYSCPLQCAYC-SNPINYPEARSSELSTDEWKTVFKDARKMGAVQLG---LS 71

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETN 119
           GGEPL++ D+  LI      GF   + T+
Sbjct: 72  GGEPLVRPDLEELIAEARALGFYTNLITS 100


>gi|167462522|ref|ZP_02327611.1| hypothetical protein Plarl_08165 [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381453|ref|ZP_08055445.1| synthesis of sporulation killing factor A-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321154592|gb|EFX46874.1| synthesis of sporulation killing factor A-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 404

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 17/64 (26%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL            C FC   +             D+   ++++    G  +     L
Sbjct: 114 GCNL-----------SCSFC---YASSGKRLENELATDEWLQILKKLAAVGVND---VTL 156

Query: 91  TGGE 94
           TGGE
Sbjct: 157 TGGE 160


>gi|85373383|ref|YP_457445.1| molybdenum cofactor biosynthesis protein [Erythrobacter litoralis
           HTCC2594]
 gi|123099561|sp|Q2NCE3|MOAA_ERYLH RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|84786466|gb|ABC62648.1| probable molybdenum cofactor biosynthesis protein [Erythrobacter
           litoralis HTCC2594]
          Length = 332

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 15/89 (16%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          +     +++L DL       G  + R   LTGGEPL++ D
Sbjct: 23  DRCDLRCTYC-MPERMQFLPRAEVLTLEELRDLAVGFMRRGITKIR---LTGGEPLVRRD 78

Query: 101 -VPLIQALNKRGFEI--AVE-----TNGT 121
            V LI+AL   G  +   +E     TNGT
Sbjct: 79  VVDLIRAL---GRHVGDGLEELTLTTNGT 104


>gi|78355325|ref|YP_386774.1| radical SAM domain-containing protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78217730|gb|ABB37079.1| radical SAM domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 238

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 17/121 (14%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYC 88
           GCN  S       + +C  C    +  Q  +    +   +   ++   +WI G       
Sbjct: 21  GCNT-SVIFMGGCNMRCPTCHNYTIAWQPEQVPAISRQSILTYLKNRAKWIDG------V 73

Query: 89  VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG-------TIEPPQGIDWICVSPKAGCD 140
           V+TGGE  L   +  ++  +   G  I ++TNG       ++   Q +D   V  K   +
Sbjct: 74  VVTGGEATLVPQLETVLHDIKALGMRIKLDTNGMRPDVVESLMQQQLVDLFAVDVKGPWE 133

Query: 141 L 141
           L
Sbjct: 134 L 134


>gi|255081048|ref|XP_002504090.1| molybdopterin synthase [Micromonas sp. RCC299]
 gi|226519357|gb|ACO65348.1| molybdopterin synthase [Micromonas sp. RCC299]
          Length = 365

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLT 91
           N       ++ + +C +C     GI  T      + D++  +       G  + R   LT
Sbjct: 50  NYLRISLTEKCNLRCLYC-MPEEGIDLTAKEELLSTDEVVRVARLFVANGVDKIR---LT 105

Query: 92  GGEPLLQVDV-PLIQALNKR-GFE-IAVETNG 120
           GGEP ++ D+  +I+ L    G   IA+ TNG
Sbjct: 106 GGEPTVRPDLEEIIRRLRALPGLRDIAITTNG 137


>gi|53803496|ref|YP_114807.1| MoaA/NifB/PqqE family protein [Methylococcus capsulatus str. Bath]
 gi|53757257|gb|AAU91548.1| MoaA/NifB/PqqE family protein [Methylococcus capsulatus str. Bath]
          Length = 455

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 23/113 (20%)

Query: 28  RFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLA 71
           RF+     GC    G   D +   C             C   + G         ++D++ 
Sbjct: 75  RFATPMARGCPWDCGLCPDHMQHSCVTVLEVTGHCNLRCPVCYAGSGPDNPSYRSLDEIG 134

Query: 72  DLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE----IAVETNG 120
            +++   +  E E     ++GGEP L         L +        + V TNG
Sbjct: 135 RMLD-TIVENEGEPDVVQISGGEPTLHPR--FFDILKEARRRPIRHLMVNTNG 184


>gi|30020258|ref|NP_831889.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC
           14579]
 gi|229043907|ref|ZP_04191603.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH676]
 gi|29895808|gb|AAP09090.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC
           14579]
 gi|228725438|gb|EEL76699.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH676]
          Length = 337

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L       G  + R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPD--YAFLKEEL--LLTFDEIERLARLFISMGVNKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQAL-NKRGFE-IAVETNG 120
           GEPLL+ D+  LI  L N  G + I + TNG
Sbjct: 75  GEPLLRKDLSTLIARLTNLEGLQDIGLTTNG 105


>gi|70726083|ref|YP_252997.1| hypothetical protein SH1082 [Staphylococcus haemolyticus JCSC1435]
 gi|68446807|dbj|BAE04391.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 381

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D +   ++E       + R   +TGGEP+         
Sbjct: 45  RCSHCAVGYT-LQTKDPDALPMDIIYRRLDEI-----PQLRTISITGGEPMFSKKSIKNI 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
             PL++    RG  + + +N T+   + +D 
Sbjct: 99  VKPLLKYAKDRGIYVQMNSNLTLPQDRYLDI 129


>gi|322435418|ref|YP_004217630.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321163145|gb|ADW68850.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 377

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 41/128 (32%), Gaps = 30/128 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C       Q         +    LI++            VL 
Sbjct: 65  CNLL-----------CVTC--PRTYEQLEPEADMPWEMFTSLIDQYPNIAR-----VVLH 106

Query: 92  G-GEPLLQVDVPL-IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
           G GEP+L  D+   ++ L  R   +   TNGT+          ++ K G  L   G  EL
Sbjct: 107 GIGEPMLVKDIAERVKYLKDRNIYVLFNTNGTL----------LNDKNGRALIEAGLDEL 156

Query: 150 KLVFPQVN 157
           ++      
Sbjct: 157 RVSLDAAE 164


>gi|295695415|ref|YP_003588653.1| YfkB-like domain protein [Bacillus tusciae DSM 2912]
 gi|295411017|gb|ADG05509.1| YfkB-like domain protein [Bacillus tusciae DSM 2912]
          Length = 408

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 41/125 (32%), Gaps = 42/125 (33%)

Query: 14  QGEGGHAGRVAVFCRFS--------GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
           QGE           R S         CNL            C   DT  +  +     R 
Sbjct: 20  QGE----------IRLSSIEVTVTGRCNLRC--------EHCAVGDTLTITEE-----RP 56

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV------PLIQALNKRGFEIAVETN 119
           ++  L   +++             +TGGEP    ++      PL++    RG +  + TN
Sbjct: 57  DIGPLLRRLDQI-----DHLTTLSITGGEPSYDRELIESTVLPLLRYAKNRGCQTQINTN 111

Query: 120 GTIEP 124
            T++ 
Sbjct: 112 LTLDV 116


>gi|253579549|ref|ZP_04856818.1| glycyl-radical enzyme activating protein family [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251849050|gb|EES77011.1| glycyl-radical enzyme activating protein family [Ruminococcus sp.
           5_1_39BFAA]
          Length = 263

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 26/107 (24%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC-----------DTDFVGIQGTKGGRYNVDQLADL 73
           VF    GC             +C++C                G     G    V ++ + 
Sbjct: 28  VF--LKGC-----------VLRCKWCCNPESQEYKIQTMKVQGEDKVIGRDVTVREMIEE 74

Query: 74  IEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           +E+  +   + G    L+GGE L Q +    L++A  +RG   A+E+
Sbjct: 75  VEKDRVYYYRSGGGMTLSGGECLCQPEFAGALLRAAKERGISTAIES 121


>gi|317049139|ref|YP_004116787.1| radical SAM enzyme, Cfr family [Pantoea sp. At-9b]
 gi|316950756|gb|ADU70231.1| radical SAM enzyme, Cfr family [Pantoea sp. At-9b]
          Length = 389

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I    +TG++     V+ G
Sbjct: 123 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG 182

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 183 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 233


>gi|125718548|ref|YP_001035681.1| pyruvate formate-lyase-activating enzyme, putative [Streptococcus
           sanguinis SK36]
 gi|125498465|gb|ABN45131.1| Pyruvate formate-lyase-activating enzyme, putative [Streptococcus
           sanguinis SK36]
 gi|325690982|gb|EGD32982.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK115]
 gi|325695084|gb|EGD36987.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK150]
 gi|327470462|gb|EGF15918.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK330]
 gi|327490123|gb|EGF21911.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK1058]
          Length = 269

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 25/101 (24%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC++           +C++C   DT        +  +  +  + D+++E     
Sbjct: 37  VF--LQGCHM-----------RCQYCHNPDT-----WEMETNKSQLRTVDDVLQEALRYK 78

Query: 82  EKEGRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
              G      ++GGE LLQ+D  + L     + G    ++T
Sbjct: 79  GFWGNKGGITVSGGEALLQIDFLIALFTKAKELGIHCTLDT 119


>gi|157112872|ref|XP_001657654.1| molybdopterin cofactor synthesis protein a [Aedes aegypti]
 gi|108884620|gb|EAT48845.1| molybdopterin cofactor synthesis protein a [Aedes aegypti]
          Length = 481

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGT-KGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C++C     G+Q T K      D++  L       G ++ R   L
Sbjct: 125 CNL-----------RCKYC-MPAEGVQLTPKDNLLTTDEVLRLATLFVEQGVRKIR---L 169

Query: 91  TGGEPLLQVDVP-LIQALNKRGF--EIAVETNG 120
           TGGEP ++ D+P +I+ L +      + + TNG
Sbjct: 170 TGGEPTVRKDLPEIIERLKRIPLLESVGITTNG 202


>gi|325275801|ref|ZP_08141670.1| molybdenum cofactor synthesis domain-containing protein
           [Pseudomonas sp. TJI-51]
 gi|324099072|gb|EGB97049.1| molybdenum cofactor synthesis domain-containing protein
           [Pseudomonas sp. TJI-51]
          Length = 322

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 23/164 (14%)

Query: 46  QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102
            C +C  D   +          + D LA  +         E     +TGGEPL+      
Sbjct: 24  ACTYCVPDGKRLV---AAQDELSADALARGVAYLIEAAGIERLR--ITGGEPLVSPRLDA 78

Query: 103 LIQALNKRGFE-IAVETNG---TIEPPQ----GIDWICVSPKAGCDLKIK---GGQELKL 151
            + A+ K G E I++ TNG     + PQ    GI  + VS      L  +    G +L  
Sbjct: 79  FLAAVAKLGLEDISLTTNGQMLGRKLPQLQAAGIRRLNVSLDTLDPLAFRQIARGGDLAT 138

Query: 152 VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
           V   +  +    +     + ++ PM G  L++   L + YC   
Sbjct: 139 VLAAMERARAMGMQI---KVNMVPMRGQNLDQVLPL-LDYCMAR 178


>gi|153000510|ref|YP_001366191.1| radical SAM domain-containing protein [Shewanella baltica OS185]
 gi|151365128|gb|ABS08128.1| Radical SAM domain protein [Shewanella baltica OS185]
          Length = 314

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 14/107 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY--------CVLTGGEPLL 97
            C +C   +            ++   D + E +I G    +             GGEP++
Sbjct: 35  NCSYCFAKWGKPNELHRSLPEIETFLDNLSEYFIKGSPPLKNELGYESVRLNFAGGEPMM 94

Query: 98  QVDVPLIQAL--NKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
                 I  +   ++GF+ ++ TNG       +D     PK   D+ 
Sbjct: 95  LGSTFFIALMLAKQKGFKTSIITNGHYLINCHLDL----PKNVLDMV 137


>gi|24213374|ref|NP_710855.1| oxidoreductase [Leptospira interrogans serovar Lai str. 56601]
 gi|45658752|ref|YP_002838.1| hypothetical protein LIC12923 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24194126|gb|AAN47873.1| oxidoreductase [Leptospira interrogans serovar Lai str. 56601]
 gi|45601996|gb|AAS71475.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 514

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 19/96 (19%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           F GC+L            C FC          + G++   +  + +  Q           
Sbjct: 239 FRGCDL-----------SCSFC--PRQFNSNDQDGKFLSPEFLESLLRQQEESFSNEYTV 285

Query: 89  VLTG-GEPLLQVDV-PLI-QALNKRGF---EIAVET 118
              G GEPLL  +   LI  AL        E+ +ET
Sbjct: 286 CFGGLGEPLLHPNFKELILTALKSSSHLMQELMIET 321


>gi|325289531|ref|YP_004265712.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324964932|gb|ADY55711.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 332

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 49  FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL 107
           +CD  +      +    +  +   ++E+    G    +  + +GGEPL++ D+  L    
Sbjct: 14  YCDHCYRDSGVRQEEELSTAEAETMLEQIARAG---FKIMIFSGGEPLMRPDIVDLAAYA 70

Query: 108 NKRGFEIAVETNGTI 122
            + G      TNGT+
Sbjct: 71  RELGLRPVFGTNGTL 85


>gi|308050460|ref|YP_003914026.1| 23S rRNA m(2)A-2503 methyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307632650|gb|ADN76952.1| 23S rRNA m(2)A-2503 methyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 372

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 58/178 (32%), Gaps = 34/178 (19%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI----------TGEKEG 85
               Q   + +C FC T   G             +A++I + W           TGE+  
Sbjct: 106 CVSSQVGCALECSFCSTAQQGFN-------RNLSVAEIIGQVWRVAKYLGLKNETGERPI 158

Query: 86  RYCVLTG-GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSP 135
              V+ G GEPLL +   VP +   L+  GF      + + T+G +     + D I V+ 
Sbjct: 159 SNVVMMGMGEPLLNLSNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA- 217

Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                L      EL+ V   VN            R  L             + + Y  
Sbjct: 218 -LAISLHAPN-DELRDVLVPVNKKYNIETFLASVRTYL----TKSYANKGRVTVEYVM 269


>gi|229028271|ref|ZP_04184407.1| dehydrogenase [Bacillus cereus AH1271]
 gi|228733035|gb|EEL83881.1| dehydrogenase [Bacillus cereus AH1271]
          Length = 375

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|20809080|ref|NP_624251.1| arylsulfatase regulator (Fe-S oxidoreductase) [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517756|gb|AAM25855.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Thermoanaerobacter
           tengcongensis MB4]
          Length = 441

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 23/112 (20%)

Query: 27  CRFSGCNLWSGREQDR-------LSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
            RF   NLW  R  D+        +  C F C   +   +G +   +  +++ D I +  
Sbjct: 76  LRF---NLWRSRFNDKNLGLTIAPTLGCNFAC--VYCYEKGNQKDVFMSEEVQDKIVKYI 130

Query: 79  ITGEKEGRYCVLT--GGEPLLQVDV-----PLIQALNKRG---FEIAVETNG 120
               K  +   +T  GGEPLL  D+       I  L       +  ++ TNG
Sbjct: 131 KQRIKYLQSVNITWYGGEPLLAFDIVKDMSEKIIKLCDENEVMYGASIITNG 182


>gi|330836381|ref|YP_004411022.1| Radical SAM domain-containing protein [Spirochaeta coccoides DSM
           17374]
 gi|329748284|gb|AEC01640.1| Radical SAM domain protein [Spirochaeta coccoides DSM 17374]
          Length = 335

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 19/92 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C          +  +   +Q+ + + +       +G +   T
Sbjct: 18  CNL-----------RCIYC----NPEGKFEDRKIMDEQVLNNVIKACSELSFKGVH--FT 60

Query: 92  GGEPLLQVDVPL-IQALNKRGFE-IAVETNGT 121
           GGEP+++ ++ L I+      +  I++ TNGT
Sbjct: 61  GGEPMMRENIILAIKYCKNLNYHDISMTTNGT 92


>gi|330824021|ref|YP_004387324.1| ribosomal RNA large subunit methyltransferase N [Alicycliphilus
           denitrificans K601]
 gi|329309393|gb|AEB83808.1| Ribosomal RNA large subunit methyltransferase N [Alicycliphilus
           denitrificans K601]
          Length = 374

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 14/101 (13%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLADLIEEQWIT-GEKEGRYCVLTG 92
               Q   +  CRFC T   G     T G        A+ +  Q    GE+     V+ G
Sbjct: 104 CISSQAGCAVGCRFCSTGHQGFSRNLTTGEIVAQLWHAEHVLRQRRGDGERVISNVVMMG 163

Query: 93  -GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123
            GEPL Q    L+ AL       G+      + V T+G + 
Sbjct: 164 MGEPL-QNYSALVPALRIMLDDHGYGLSRRRVTVSTSGVVP 203


>gi|299136275|ref|ZP_07029459.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298602399|gb|EFI58553.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 358

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 23/117 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C                   + ++       G        ++
Sbjct: 61  CNL-----------ACTYC--------NEFDDVSKPVDIEEMKRRVDHLGRLGTSVITIS 101

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
           GGEPLL  ++  +I+ + K G    + TNG +  P  I+ +    KAG D       
Sbjct: 102 GGEPLLHPELDDVIRQIRKTGAIAGMITNGYLLMPDRIERLN---KAGLDHMQISID 155


>gi|319763716|ref|YP_004127653.1| radical sam enzyme, cfr family [Alicycliphilus denitrificans BC]
 gi|317118277|gb|ADV00766.1| radical SAM enzyme, Cfr family [Alicycliphilus denitrificans BC]
          Length = 374

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 14/101 (13%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLADLIEEQWIT-GEKEGRYCVLTG 92
               Q   +  CRFC T   G     T G        A+ +  Q    GE+     V+ G
Sbjct: 104 CISSQAGCAVGCRFCSTGHQGFSRNLTTGEIVAQLWHAEHVLRQRRGDGERVISNVVMMG 163

Query: 93  -GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123
            GEPL Q    L+ AL       G+      + V T+G + 
Sbjct: 164 MGEPL-QNYSALVPALRIMLDDHGYGLSRRRVTVSTSGVVP 203


>gi|296502742|ref|YP_003664442.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           BMB171]
 gi|296323794|gb|ADH06722.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           BMB171]
          Length = 337

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L       G  + R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPD--YAFLKEEL--LLTFDEIERLARLFISMGVNKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQAL-NKRGFE-IAVETNG 120
           GEPLL+ D+  LI  L N  G + I + TNG
Sbjct: 75  GEPLLRKDLSTLIARLTNLEGLQDIGLTTNG 105


>gi|296109160|ref|YP_003616109.1| Radical SAM domain protein [Methanocaldococcus infernus ME]
 gi|295433974|gb|ADG13145.1| Radical SAM domain protein [Methanocaldococcus infernus ME]
          Length = 494

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 19/106 (17%)

Query: 31  GCNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           GC    G                 +R +  C  C   F     T        +    + E
Sbjct: 70  GCPFDCGLCPSHRTTTILANIDVTNRCNLNCPIC---FANANKTGKVYEPSFEEIKKMME 126

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
              + E         GGEP ++ D+P LI+   + GF ++ + TNG
Sbjct: 127 ILRSEEPPTPAIQFAGGEPTVREDLPELIKLAREMGFLQVQIATNG 172


>gi|163793282|ref|ZP_02187257.1| Radical SAM:Molybdenum cofactor synthesis-like protein [alpha
           proteobacterium BAL199]
 gi|159181084|gb|EDP65599.1| Radical SAM:Molybdenum cofactor synthesis-like protein [alpha
           proteobacterium BAL199]
          Length = 346

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR   +C +C          K    ++++LA L       G K+ R   LTG
Sbjct: 26  NYLRISVTDRCDFRCVYC-MAENMTFLPKADVLSLEELARLCNVFVDLGVKKLR---LTG 81

Query: 93  GEPL-----LQVDVPLIQALNKRGF-EIAVETNGT 121
           GEPL     + +   L + L+  G  E+ V TNG+
Sbjct: 82  GEPLVRRNIMWLFRELGKRLDGGGLEELTVTTNGS 116


>gi|254823205|ref|ZP_05228206.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           intracellulare ATCC 13950]
          Length = 364

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 65/181 (35%), Gaps = 25/181 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C     G+    G +     +LA L++               TGGEPLL  
Sbjct: 51  DRCNLRCTYC-MPAEGLDWLPGEQLLTAGELARLMD--IAVTRLGVTNVRFTGGEPLLAR 107

Query: 100 DVPLIQALNKRGF----EIAVETNGT-------IEPPQGIDWICVS----PKAGCDLKIK 144
            +  + A    G     EI++ TNG             G+D + VS     +      I 
Sbjct: 108 HLEEVIA-AAAGLRPRPEISLTTNGVGLARRAAGLARAGLDRVNVSLDSVDRQHFA-AIT 165

Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN-PKWRLSVQ 203
               L  V   +  + E  +        L P  G   E+  +L + +C ++  + R+  Q
Sbjct: 166 RRDRLDDVLAGLAAAHEAGLAPVKVNAVLDPATG--REDVVDL-LRFCLEHGYQLRVIEQ 222

Query: 204 T 204
            
Sbjct: 223 M 223


>gi|229089543|ref|ZP_04220810.1| dehydrogenase [Bacillus cereus Rock3-42]
 gi|228693759|gb|EEL47455.1| dehydrogenase [Bacillus cereus Rock3-42]
          Length = 375

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|229048433|ref|ZP_04194000.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH676]
 gi|229130005|ref|ZP_04258969.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           BDRD-Cer4]
 gi|229147295|ref|ZP_04275646.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           BDRD-ST24]
 gi|228636196|gb|EEK92675.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           BDRD-ST24]
 gi|228653449|gb|EEL09323.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           BDRD-Cer4]
 gi|228722948|gb|EEL74326.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH676]
          Length = 339

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 14/88 (15%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C       +D+  ++         D++  L +     G ++ R   +TGGE
Sbjct: 24  DRCNFRCTYCMPAEIFGSDYAFLKDEF--LLTFDEIERLAKLFVNIGVRKIR---ITGGE 78

Query: 95  PLLQVDV-PLIQALNKRG--FEIAVETN 119
           PLL+ D+  LI  L K     +I + TN
Sbjct: 79  PLLRKDLTKLIARLVKIDGLIDIGLTTN 106


>gi|218895539|ref|YP_002443950.1| hypothetical protein BCG9842_B4837 [Bacillus cereus G9842]
 gi|218541756|gb|ACK94150.1| conserved hypothetical protein [Bacillus cereus G9842]
          Length = 375

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|196034724|ref|ZP_03102132.1| conserved hypothetical protein [Bacillus cereus W]
 gi|228944235|ref|ZP_04106611.1| dehydrogenase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|195992767|gb|EDX56727.1| conserved hypothetical protein [Bacillus cereus W]
 gi|228815386|gb|EEM61631.1| dehydrogenase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 375

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|197117823|ref|YP_002138250.1| pyranopterin triphosphate synthase [Geobacter bemidjiensis Bem]
 gi|197087183|gb|ACH38454.1| pyranopterin triphosphate synthase [Geobacter bemidjiensis Bem]
          Length = 326

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLT 91
           N       DR + +C +C     G++     R  + ++L  + ++    G ++ R   +T
Sbjct: 12  NYLRLSVTDRCNLRCSYC-MPAQGVKLLPQDRVLSYEELLRVAKQAVAVGIEKIR---VT 67

Query: 92  GGEPLLQVDV-PLIQALNK-RGF-EIAVETNGTI 122
           GGEPL++  + P ++ L    G  E+ + TNGT+
Sbjct: 68  GGEPLVRKGIVPFLKRLALIPGLEELVLTTNGTL 101


>gi|42779617|ref|NP_976864.1| hypothetical protein BCE_0537 [Bacillus cereus ATCC 10987]
 gi|206974237|ref|ZP_03235154.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217958018|ref|YP_002336562.1| hypothetical protein BCAH187_A0537 [Bacillus cereus AH187]
 gi|222094217|ref|YP_002528274.1| thioredoxin-like oxidoreductase [Bacillus cereus Q1]
 gi|229137284|ref|ZP_04265900.1| dehydrogenase [Bacillus cereus BDRD-ST26]
 gi|229194799|ref|ZP_04321586.1| dehydrogenase [Bacillus cereus m1293]
 gi|42735533|gb|AAS39472.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gi|206747477|gb|EDZ58867.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217065915|gb|ACJ80165.1| conserved hypothetical protein [Bacillus cereus AH187]
 gi|221238272|gb|ACM10982.1| thioredoxin-like oxidoreductase [Bacillus cereus Q1]
 gi|228588647|gb|EEK46678.1| dehydrogenase [Bacillus cereus m1293]
 gi|228646187|gb|EEL02405.1| dehydrogenase [Bacillus cereus BDRD-ST26]
 gi|324324522|gb|ADY19782.1| thioredoxin-like oxidoreductase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 375

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|146295610|ref|YP_001179381.1| radical SAM domain-containing protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409186|gb|ABP66190.1| Radical SAM domain protein [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 487

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 20/91 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       R+       DT F+            + L  + +E    G +E    V++
Sbjct: 123 CNLNCSHCFARMKG-----DTGFI----------PANDLIRIFKEAQSLGVQE---IVIS 164

Query: 92  GGEPLLQVDVP--LIQALNKRGFEIAVETNG 120
           GGEP L  ++   L +A     ++I + TNG
Sbjct: 165 GGEPTLHPELENILREARKIGDWKIKLITNG 195


>gi|260893393|ref|YP_003239490.1| Radical SAM domain protein [Ammonifex degensii KC4]
 gi|260865534|gb|ACX52640.1| Radical SAM domain protein [Ammonifex degensii KC4]
          Length = 466

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 21/92 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   + G+   K      + L  +I E    G     + V++
Sbjct: 128 CNL-----------RCEGC---WAGMY-EKHDTLEFETLDRIITEAKELGIY---WIVMS 169

Query: 92  GGEPLLQ-VDVPLIQALNKRGFEIAVETNGTI 122
           GGEP      + L+       F +   TNGT+
Sbjct: 170 GGEPFKYSRLLELVAKHPDMAFMVY--TNGTL 199


>gi|221067914|ref|ZP_03544019.1| molybdenum cofactor biosynthesis protein A [Comamonas testosteroni
           KF-1]
 gi|220712937|gb|EED68305.1| molybdenum cofactor biosynthesis protein A [Comamonas testosteroni
           KF-1]
          Length = 380

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 25/153 (16%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D ++  +  +     ++    ++     +      R   LTGGE
Sbjct: 48  DRCNFRCNYCMPKEVFDKNYQYLPHS-----SLLSFEEITRLARLFVAHGVRKLRLTGGE 102

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCD 140
           PLL+ ++  LI  L +         ++ + TN ++           G++ + VS     D
Sbjct: 103 PLLRKNIEALIAQLAELRTPDGLPLDLTLTTNASLLARKARALKEAGLNRVTVSLDGLDD 162

Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
              +   ++      V    E           +
Sbjct: 163 AVFRRMNDVDFPVTDVLAGIEAAQATGLSHIKV 195


>gi|167842323|ref|ZP_02469007.1| radical SAM domain protein [Burkholderia thailandensis MSMB43]
          Length = 386

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 22/116 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +VD+    ++E             +
Sbjct: 38  CNL-----------ACNGCGKIDY--PDPILNQRLSVDECLQAVDECG------APVVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
            GGEPLL  ++P +++ + KR   + + TN  +   + +D    SP     + + G
Sbjct: 79  AGGEPLLHKEMPDIVKGIMKRKKFVYLCTN-ALLMEKKMDDYEPSPYFVWSVHLDG 133


>gi|52144823|ref|YP_082004.1| moaA/nifB/pqqE family protein [Bacillus cereus E33L]
 gi|300119045|ref|ZP_07056756.1| moaA/nifB/pqqE family protein [Bacillus cereus SJ1]
 gi|51978292|gb|AAU19842.1| probable moaA/nifB/pqqE family protein [Bacillus cereus E33L]
 gi|298723661|gb|EFI64392.1| moaA/nifB/pqqE family protein [Bacillus cereus SJ1]
          Length = 375

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|311029133|ref|ZP_07707223.1| putative Fe-S oxidoreductase, radical SAM superfamily protein
           [Bacillus sp. m3-13]
          Length = 374

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99
           +C  C   +            ++ L   +EE         R   +TGGEP++      + 
Sbjct: 44  RCEHCAVGYTLQPKDPKA-LPIELLIQRLEEI-----PRLRSISITGGEPMMSMKSVNEY 97

Query: 100 DVPLIQALNKRGFEIAVETNGTIEP 124
            VPL++  ++RG    + +N T++ 
Sbjct: 98  VVPLLKYAHERGVRTQINSNLTLDL 122


>gi|309811257|ref|ZP_07705048.1| molybdenum cofactor biosynthesis protein A [Dermacoccus sp.
           Ellin185]
 gi|308434797|gb|EFP58638.1| molybdenum cofactor biosynthesis protein A [Dermacoccus sp.
           Ellin185]
          Length = 362

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           D+ + +C +C    +  +G     R  +    +++    I  E       LTGGEPLL+ 
Sbjct: 52  DKCNLRCTYC----MPAEGVPLAPRDTLLASDEIVTVARIAVEAGIDEIRLTGGEPLLRP 107

Query: 100 DV-PLIQALNK 109
           D+  L++ L  
Sbjct: 108 DIVDLVERLAA 118


>gi|307596089|ref|YP_003902406.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM
           14429]
 gi|307551290|gb|ADN51355.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 572

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 19/115 (16%)

Query: 30  SGCNLWSGREQD----------RLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQW 78
            GC L    + +          R + +C  C   F             ++Q+  ++    
Sbjct: 141 QGCGLCPVHKTNTVLAIIDVTNRCNMKCPVC---FANAYAAGYVYEPTLEQIEYMLRTFR 197

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVE--TNGTIEPPQGIDW 130
                       +GGEP L+ D+P +I+     GF+  +E  TNG I     ID+
Sbjct: 198 AQKPWAPNAIQFSGGEPTLRNDLPEIIRMAKALGFD-HIEVNTNG-IRLANDIDY 250


>gi|228906226|ref|ZP_04070113.1| dehydrogenase [Bacillus thuringiensis IBL 200]
 gi|228853382|gb|EEM98152.1| dehydrogenase [Bacillus thuringiensis IBL 200]
          Length = 375

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|228950973|ref|ZP_04113094.1| dehydrogenase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229077776|ref|ZP_04210403.1| dehydrogenase [Bacillus cereus Rock4-2]
 gi|228705504|gb|EEL57863.1| dehydrogenase [Bacillus cereus Rock4-2]
 gi|228808700|gb|EEM55198.1| dehydrogenase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 375

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|218960362|ref|YP_001740137.1| hypothetical protein CLOAM0012 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729019|emb|CAO79930.1| hypothetical protein CLOAM0012 [Candidatus Cloacamonas
           acidaminovorans]
          Length = 335

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 11/91 (12%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            L S    D  + +C +C+  F     T     N D    LIE          R   ++G
Sbjct: 57  PLLSVDITDACNLRCIYCNNPFFPYPRTM---MNQDVFKALIERLKRHPVSRIR---ISG 110

Query: 93  GEPLLQVDVPLIQALNKRGFEI---AVETNG 120
           GEP L         L +  +     ++ TNG
Sbjct: 111 GEPTLHPQFD--TMLKEMSYYCKYLSIITNG 139


>gi|157163980|ref|YP_001466045.1| molybdenum cofactor biosynthesis protein A [Campylobacter concisus
           13826]
 gi|166217240|sp|A7ZB87|MOAA_CAMC1 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|112801191|gb|EAT98535.1| molybdenum cofactor biosynthesis protein A [Campylobacter concisus
           13826]
          Length = 322

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 10/84 (11%)

Query: 42  RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           R + +CR+C   T F             ++L   ++     G K+ R   +TGGEPL++ 
Sbjct: 20  RCNFRCRYCMPTTPFSWTPKEN--LLTFEELFLFVKVAIDEGVKKIR---ITGGEPLVRK 74

Query: 100 DVP-LIQALNK--RGFEIAVETNG 120
           D+   I+ ++      ++A+ TNG
Sbjct: 75  DLDVFIKMISDYKPDIDLALTTNG 98


>gi|299139623|ref|ZP_07032797.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298598551|gb|EFI54715.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 351

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 11/89 (12%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            R     +      +  + +C  CD      Q   G   ++   A   E     G +E  
Sbjct: 27  VRL---PILLLNVHEHCNCRCVMCD----IWQRKDGKELDLVGFARHRESILQLGVQE-- 77

Query: 87  YCVLTGGEPLLQVDVP-LIQALNKRGFEI 114
             VLTGGE LL  +   L   L   G  I
Sbjct: 78  -VVLTGGEALLHRNFEGLCSFLRDCGVRI 105


>gi|291539783|emb|CBL12894.1| Predicted Fe-S oxidoreductases [Roseburia intestinalis XB6B4]
          Length = 351

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 29/160 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN       +R    C                    ++L  +I E     +   R   + 
Sbjct: 22  CNFRCRHCFNRSGEHC------------FGERELTDEELMKIIVE---VADIAPRSLCIC 66

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151
           GGEPLL+ D+     L K G     +T+G       ++ +      G  +  +   ELK 
Sbjct: 67  GGEPLLRKDI-----LIKMGKYYTEKTSG----RTSLNMVT----NGFLITEEVADELKE 113

Query: 152 V-FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAIS 190
             F  V VS +       E    QP      +E   + + 
Sbjct: 114 AGFRTVQVSLDGASAESHEWIRNQPGSFERAKEALRILVD 153


>gi|255658517|ref|ZP_05403926.1| nitrite reductase heme biosynthesis J protein [Mitsuokella
           multacida DSM 20544]
 gi|260849317|gb|EEX69324.1| nitrite reductase heme biosynthesis J protein [Mitsuokella
           multacida DSM 20544]
          Length = 396

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       +  A+       +     T+  +  +D LAD                + +
Sbjct: 47  CNLKCMHCYMQSDAK------KYKDELTTEEAKKFIDDLAD----------FHVPVLLFS 90

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GGEPL++ D   L     ++G    + TNGT+
Sbjct: 91  GGEPLIRPDFFELAAYAQEKGVRPTLSTNGTL 122


>gi|222110300|ref|YP_002552564.1| radical sam enzyme, cfr family [Acidovorax ebreus TPSY]
 gi|221729744|gb|ACM32564.1| radical SAM enzyme, Cfr family [Acidovorax ebreus TPSY]
          Length = 383

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 20/104 (19%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL------IEEQWITGEKEGRYCV 89
               Q   +  CRFC T   G QG        + LA L      + ++   GE+     V
Sbjct: 113 CISSQAGCAVGCRFCST---GHQGFSRNLTTGEILAQLWYAEHALRQRRGDGERVISNVV 169

Query: 90  LTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123
           + G GEPL Q    L+ AL       G+      + V T+G + 
Sbjct: 170 MMGMGEPL-QNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVP 212


>gi|121593579|ref|YP_985475.1| radical SAM protein [Acidovorax sp. JS42]
 gi|205829704|sp|A1W574|RLMN_ACISJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|120605659|gb|ABM41399.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax sp. JS42]
          Length = 374

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 20/104 (19%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL------IEEQWITGEKEGRYCV 89
               Q   +  CRFC T   G QG        + LA L      + ++   GE+     V
Sbjct: 104 CISSQAGCAVGCRFCST---GHQGFSRNLTTGEILAQLWYAEHALRQRRGDGERVISNVV 160

Query: 90  LTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123
           + G GEPL Q    L+ AL       G+      + V T+G + 
Sbjct: 161 MMGMGEPL-QNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVP 203


>gi|49480103|ref|YP_034749.1| moaA/nifB/pqqE family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|218901625|ref|YP_002449459.1| hypothetical protein BCAH820_0467 [Bacillus cereus AH820]
 gi|228925675|ref|ZP_04088762.1| dehydrogenase [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|229120083|ref|ZP_04249335.1| dehydrogenase [Bacillus cereus 95/8201]
 gi|49331659|gb|AAT62305.1| probable moaA/nifB/pqqE family protein [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|218536468|gb|ACK88866.1| conserved hypothetical protein [Bacillus cereus AH820]
 gi|228663321|gb|EEL18909.1| dehydrogenase [Bacillus cereus 95/8201]
 gi|228833950|gb|EEM79500.1| dehydrogenase [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 375

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|55979980|ref|YP_143277.1| molybdenum cofactor biosynthesis protein A MoaA [Thermus
           thermophilus HB8]
 gi|55771393|dbj|BAD69834.1| molybdenum cofactor biosynthesis protein A (MoaA) [Thermus
           thermophilus HB8]
          Length = 336

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C            G   V+++   +E   + G    R+   T
Sbjct: 33  CNL-----------HCLYC-HPLGLEMREPPGTLTVEEVDRFLEAASLLGLSSVRF---T 77

Query: 92  GGEPLLQVDVPLI--QALNKRGFE-IAVETNG 120
           GGEPL++ ++P +  +A  K G E +A+ TNG
Sbjct: 78  GGEPLVRKELPEMIARARAKEGVEDVAITTNG 109


>gi|229148819|ref|ZP_04277067.1| dehydrogenase [Bacillus cereus m1550]
 gi|228634613|gb|EEK91194.1| dehydrogenase [Bacillus cereus m1550]
          Length = 375

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|229182806|ref|ZP_04310045.1| dehydrogenase [Bacillus cereus BGSC 6E1]
 gi|228600686|gb|EEK58267.1| dehydrogenase [Bacillus cereus BGSC 6E1]
          Length = 375

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|196040113|ref|ZP_03107415.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
 gi|196045287|ref|ZP_03112519.1| oxidoreductase, radical SAM superfamily [Bacillus cereus 03BB108]
 gi|228913169|ref|ZP_04076808.1| dehydrogenase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|301052137|ref|YP_003790348.1| putative moaA/nifB/pqqE family protein [Bacillus anthracis CI]
 gi|196023871|gb|EDX62546.1| oxidoreductase, radical SAM superfamily [Bacillus cereus 03BB108]
 gi|196028968|gb|EDX67573.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
 gi|228846574|gb|EEM91587.1| dehydrogenase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|300374306|gb|ADK03210.1| probable moaA/nifB/pqqE family protein [Bacillus cereus biovar
           anthracis str. CI]
          Length = 375

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|118476173|ref|YP_893324.1| radical SAM superfamily oxidoreductase [Bacillus thuringiensis str.
           Al Hakam]
 gi|225862462|ref|YP_002747840.1| oxidoreductase, radical SAM superfamily [Bacillus cereus 03BB102]
 gi|118415398|gb|ABK83817.1| oxidoreductase, radical SAM superfamily [Bacillus thuringiensis
           str. Al Hakam]
 gi|225788857|gb|ACO29074.1| oxidoreductase, radical SAM superfamily [Bacillus cereus 03BB102]
          Length = 375

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|57640788|ref|YP_183266.1| hypothetical protein TK0852 [Thermococcus kodakarensis KOD1]
 gi|57159112|dbj|BAD85042.1| hypothetical protein, conserved, radical SAM superfamily
           [Thermococcus kodakarensis KOD1]
          Length = 262

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 13/99 (13%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR---YNVDQLADLIEEQWITGE 82
           F GCN        R   +   C   +T        + GR    +V+++ DL+++  +T  
Sbjct: 41  FDGCNWNCSFCVWRKVTRWSLCLPLETRRKLDYMWRTGRVRYLSVNEVVDLLKKARVTTA 100

Query: 83  KEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
             G      GGEP L  ++  L++AL + G +  + TNG
Sbjct: 101 FLG------GGEPTLDPELKALMRALRREGIKPWLVTNG 133


>gi|42524721|ref|NP_970101.1| heme biosynthesis [Bdellovibrio bacteriovorus HD100]
 gi|39576931|emb|CAE78160.1| heme biosynthesis [Bdellovibrio bacteriovorus HD100]
          Length = 427

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 48/147 (32%), Gaps = 33/147 (22%)

Query: 20  AGRVAVFCR------FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73
           +GR++V  R         CNL           +C +C     G  GT G       +   
Sbjct: 67  SGRLSVGIRSLTINVTQICNL-----------KCTYC---AAGGDGTYGSAQTKINVEKT 112

Query: 74  IEEQW----ITGEKEGRYCVLTGGEPLLQVD--------VPLIQALNKRGFEIAVETNGT 121
           + +                   GGEPLL  D        V L+ A        ++ TNGT
Sbjct: 113 LPQLKFFLERVPTGGRFNITFLGGEPLLYPDGIQEIGNYVRLMTAGQNVQASFSIVTNGT 172

Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQE 148
           +   + +  +  S K    + + G  E
Sbjct: 173 LINEKTLKVLT-SLKTNITVSLDGPAE 198


>gi|75760084|ref|ZP_00740147.1| Thioredoxin-like oxidoreductases [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228977177|ref|ZP_04137576.1| dehydrogenase [Bacillus thuringiensis Bt407]
 gi|74492434|gb|EAO55587.1| Thioredoxin-like oxidoreductases [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228782486|gb|EEM30665.1| dehydrogenase [Bacillus thuringiensis Bt407]
 gi|326938204|gb|AEA14100.1| thioredoxin-like oxidoreductase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 375

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|47567247|ref|ZP_00237961.1| thioredoxin-like oxidoreductases [Bacillus cereus G9241]
 gi|228983679|ref|ZP_04143879.1| dehydrogenase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229042322|ref|ZP_04190072.1| dehydrogenase [Bacillus cereus AH676]
 gi|47556090|gb|EAL14427.1| thioredoxin-like oxidoreductases [Bacillus cereus G9241]
 gi|228726981|gb|EEL78188.1| dehydrogenase [Bacillus cereus AH676]
 gi|228776031|gb|EEM24397.1| dehydrogenase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 375

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|319941457|ref|ZP_08015785.1| molybdenum cofactor biosynthesis protein A [Sutterella
           wadsworthensis 3_1_45B]
 gi|319805077|gb|EFW01907.1| molybdenum cofactor biosynthesis protein A [Sutterella
           wadsworthensis 3_1_45B]
          Length = 389

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 21/112 (18%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
           D  + +CR+C     +               D++  +       G ++ R   LTGGEPL
Sbjct: 70  DHCNFRCRYCMPKEKYAQNHNFLAMTELLTFDEILRVSRIAVANGIEKIR---LTGGEPL 126

Query: 97  LQVDVP-LIQALNK----RGFEI--AVETNGTIEP-------PQGIDWICVS 134
           L+  +  L+  L       G  I  A+ TNG++           G+  I VS
Sbjct: 127 LRKGIENLVAQLAALRTPAGKPIDLAMTTNGSLLIKKAQALKDAGLGRITVS 178


>gi|331646910|ref|ZP_08348009.1| putative radical SAM domain protein [Escherichia coli M605]
 gi|331044227|gb|EGI16358.1| putative radical SAM domain protein [Escherichia coli M605]
          Length = 478

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
            + + +C  C   ++   G+K    +   +  ++E+     +    +  L+GGEP+L   
Sbjct: 153 SKCNERCIHC---YI-PHGSKIKSMDTQHIYSILEQ---CKDMNVLHITLSGGEPMLHKG 205

Query: 101 V-PLIQALNKRGFEIAVETNGTIEPPQGID 129
              +++   +  F ++V TN T+     +D
Sbjct: 206 FCSILKKCREYDFAVSVLTNLTLLTDDILD 235


>gi|291545179|emb|CBL18288.1| ribonucleoside-triphosphate reductase class III activase subunit
           [Ruminococcus sp. 18P13]
          Length = 168

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 25/93 (26%), Gaps = 21/93 (22%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F    GC              C  C           G   +  QL   I+   +    
Sbjct: 22  TIFV--QGCP-----------HHCPGCHNPQT-HDFAGGTDTDCAQLLARIDANPLLDG- 66

Query: 84  EGRYCVLTGGEPLLQV--DVPLIQALNKRGFEI 114
                  +GGEP  Q      L   L +RG  I
Sbjct: 67  ----VTFSGGEPFCQASVLAELGAKLRQRGLNI 95


>gi|218231727|ref|YP_002365264.1| hypothetical protein BCB4264_A0486 [Bacillus cereus B4264]
 gi|218159684|gb|ACK59676.1| conserved hypothetical protein [Bacillus cereus B4264]
          Length = 375

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|165870651|ref|ZP_02215304.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167634839|ref|ZP_02393158.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|167641253|ref|ZP_02399506.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170688985|ref|ZP_02880186.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|177654528|ref|ZP_02936384.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190567633|ref|ZP_03020546.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|227813094|ref|YP_002813103.1| hypothetical protein BAMEG_0492 [Bacillus anthracis str. CDC 684]
 gi|254686810|ref|ZP_05150668.1| hypothetical protein BantC_23620 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724884|ref|ZP_05186667.1| hypothetical protein BantA1_20854 [Bacillus anthracis str. A1055]
 gi|254738964|ref|ZP_05196666.1| hypothetical protein BantWNA_27720 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744552|ref|ZP_05202231.1| hypothetical protein BantKB_26716 [Bacillus anthracis str. Kruger
           B]
 gi|254756190|ref|ZP_05208219.1| hypothetical protein BantV_27321 [Bacillus anthracis str. Vollum]
 gi|164713485|gb|EDR19009.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167510761|gb|EDR86154.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|167529913|gb|EDR92661.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170667086|gb|EDT17848.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|172080640|gb|EDT65723.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190561420|gb|EDV15392.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|227003854|gb|ACP13597.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684]
          Length = 375

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|120405996|ref|YP_955825.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           vanbaalenii PYR-1]
 gi|119958814|gb|ABM15819.1| GTP cyclohydrolase subunit MoaA [Mycobacterium vanbaalenii PYR-1]
          Length = 353

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 65/189 (34%), Gaps = 34/189 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C +C     G+       + N D+L  L+                
Sbjct: 43  CNL-----------RCTYC-MPAEGLDWLPSDEKLNPDELIRLLGVAVTRLGITS--VRF 88

Query: 91  TGGEPL----LQVDVPLIQALNKRGFEIAVETNGTIEPP-------QGIDWICVSPKAGC 139
           TGGEPL    L+  V    AL  R  EI + TNG             G+D I VS     
Sbjct: 89  TGGEPLVVPHLEDVVAATAALRPRP-EITLTTNGVGLAKRAAGLKRAGLDRINVSLDTVD 147

Query: 140 DLK---IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN- 195
             +   I        V   +  + E  +        L P+ G  L++  +L + +C ++ 
Sbjct: 148 PARFAAITRRDRFTEVVAGLRAAKEAGLDPVKVNAVLDPVSG--LDDVVSL-LRFCLEHG 204

Query: 196 PKWRLSVQT 204
            + R+  Q 
Sbjct: 205 YQLRVIEQM 213


>gi|22298139|ref|NP_681386.1| putative heme d1 biosynthesis protein [Thermosynechococcus
           elongatus BP-1]
 gi|22294318|dbj|BAC08148.1| tll0596 [Thermosynechococcus elongatus BP-1]
          Length = 336

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
                 + GGEPLL   +  ++  L  R   + + TNG I   + +     SP     + 
Sbjct: 72  GAPIVAIPGGEPLLHPQIDEIVSGLVARRKFVYLCTNG-ILLEENLHKFKPSPYFSFSVH 130

Query: 143 IKGGQE 148
           + G +E
Sbjct: 131 LDGLRE 136


>gi|307105078|gb|EFN53329.1| hypothetical protein CHLNCDRAFT_49033 [Chlorella variabilis]
          Length = 335

 Score = 37.7 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C     G+  T G +    +    +   ++ G  +     LT
Sbjct: 21  CNL-----------RCLYC-MPEEGVDLTPGRQLLSTEEVMRVARLFVAGGVDK--IRLT 66

Query: 92  GGEPLLQVDV-PLIQALNKR-GFE-IAVETNG 120
           GGEP L+ D+  L   L++  G   + + +NG
Sbjct: 67  GGEPTLRPDLVELTGQLSQLPGMRAVGITSNG 98


>gi|206967566|ref|ZP_03228522.1| conserved hypothetical protein [Bacillus cereus AH1134]
 gi|228919345|ref|ZP_04082714.1| dehydrogenase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|229068169|ref|ZP_04201476.1| dehydrogenase [Bacillus cereus F65185]
 gi|229177006|ref|ZP_04304401.1| dehydrogenase [Bacillus cereus 172560W]
 gi|229188686|ref|ZP_04315725.1| dehydrogenase [Bacillus cereus ATCC 10876]
 gi|206736486|gb|EDZ53633.1| conserved hypothetical protein [Bacillus cereus AH1134]
 gi|228594875|gb|EEK52655.1| dehydrogenase [Bacillus cereus ATCC 10876]
 gi|228606481|gb|EEK63907.1| dehydrogenase [Bacillus cereus 172560W]
 gi|228714983|gb|EEL66851.1| dehydrogenase [Bacillus cereus F65185]
 gi|228840281|gb|EEM85553.1| dehydrogenase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 375

 Score = 37.7 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|150400924|ref|YP_001324690.1| tRNA-modifying enzyme [Methanococcus aeolicus Nankai-3]
 gi|150013627|gb|ABR56078.1| Wyosine base formation domain protein [Methanococcus aeolicus
           Nankai-3]
          Length = 319

 Score = 37.7 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 70  LADLIEEQWITGEKEGRYCVLT-GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           + D I EQ        ++  L+  GEP +      LI+  +K+GF   V +NG
Sbjct: 119 ILDRIGEQKYNELANPKHVALSLSGEPTIYPYFKELIEIFHKKGFSTFVVSNG 171


>gi|30022797|ref|NP_834428.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC
           14579]
 gi|296505191|ref|YP_003666891.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           BMB171]
 gi|29898356|gb|AAP11629.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus ATCC
           14579]
 gi|296326243|gb|ADH09171.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           BMB171]
          Length = 337

 Score = 37.7 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 14/88 (15%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C       +D+  ++         D++  L +     G ++ R   +TGGE
Sbjct: 22  DRCNFRCTYCMPAEIFGSDYAFLKDEF--LLTFDEIERLAKLFVNIGVRKIR---ITGGE 76

Query: 95  PLLQVDV-PLIQALNKRG--FEIAVETN 119
           PLL+ D+  LI  L K     +I + TN
Sbjct: 77  PLLRKDLTKLIARLVKIDGLIDIGLTTN 104


>gi|15896050|ref|NP_349399.1| MoaA/NirJ family Fe-S oxidoreductase [Clostridium acetobutylicum
           ATCC 824]
 gi|15025835|gb|AAK80739.1|AE007777_3 MoaA/NirJ family Fe-S oxidoreductase [Clostridium acetobutylicum
           ATCC 824]
 gi|325510204|gb|ADZ21840.1| MoaA/NirJ family Fe-S oxidoreductase [Clostridium acetobutylicum EA
           2018]
          Length = 335

 Score = 37.7 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104
            C  C   +        G  +  +   LI+E    G    +  + +GGEPLL+ D+  LI
Sbjct: 14  HCEHC---YRDSGKGAEGELSTTEGKKLIDEIAKAG---FKIMIFSGGEPLLRDDIYELI 67

Query: 105 QALNKRGFEIAVETNGTI 122
              +K G    + +NGT+
Sbjct: 68  GYASKIGLRCVIGSNGTL 85


>gi|229592098|ref|YP_002874217.1| putative molybdenum cofactor biosynthesis protein A [Pseudomonas
           fluorescens SBW25]
 gi|229363964|emb|CAY51493.1| putative molybdenum cofactor biosynthesis protein A [Pseudomonas
           fluorescens SBW25]
          Length = 322

 Score = 37.7 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 20/120 (16%)

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFE-IAVETNGT-------IEPPQGIDWICVS-----P 135
           +TGGEPL+   +   + A+ + G   I++ TNG        +    GI  I VS     P
Sbjct: 65  ITGGEPLVSPKLEAFMGAVGQMGLSDISLTTNGQLLARKLPLLVEAGIKRINVSLDTLDP 124

Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
            A   +    G +L  V   ++ +    I     + ++ P+ G  L++   L + YC + 
Sbjct: 125 DAFRSIA--RGGDLATVLDGMDQARAAGIKI---KVNMVPLRGQNLDQVMPL-LDYCLER 178


>gi|242280416|ref|YP_002992545.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfovibrio salexigens DSM 2638]
 gi|242123310|gb|ACS81006.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfovibrio salexigens DSM 2638]
          Length = 226

 Score = 37.7 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 16/78 (20%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            VF    GCNL            C  C             R ++    D ++       K
Sbjct: 28  CVFF-LGGCNL-----------NCPTC---HNFDMAWNMERLHLLSRED-MKSFLRNRAK 71

Query: 84  EGRYCVLTGGEPLLQVDV 101
                 +TGGEP    ++
Sbjct: 72  WLDGVTITGGEPTTVPNL 89


>gi|46579965|ref|YP_010773.1| radical SAM domain-containing protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449381|gb|AAS96032.1| radical SAM domain protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234037|gb|ADP86891.1| Radical SAM domain protein [Desulfovibrio vulgaris RCH1]
          Length = 543

 Score = 37.7 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 32/111 (28%), Gaps = 23/111 (20%)

Query: 31  GCNLWSGRE--------------QDRLSAQCRFC------DTDFVGIQGTKGGRYNVDQL 70
           GC    G                  R + +CR+C      D           G   +  L
Sbjct: 81  GCPFDCGLCPQHNQHTCTAVFEVTTRCNLRCRYCFAAAQDDETQTLQPSAHVGDPPLHTL 140

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
             L+E              L+GGEP L      ++    +    + + TNG
Sbjct: 141 VALLEAVRQKTGPC--NIQLSGGEPTLRHDLCDIVSHARRLFPFVQLNTNG 189


>gi|322385886|ref|ZP_08059528.1| pyruvate formate-lyase activating enzyme [Streptococcus cristatus
           ATCC 51100]
 gi|321270065|gb|EFX52983.1| pyruvate formate-lyase activating enzyme [Streptococcus cristatus
           ATCC 51100]
          Length = 265

 Score = 37.7 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 27/102 (26%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC++           +C++C   DT        +  +  +  + D+++E     
Sbjct: 33  VF--LQGCHM-----------RCQYCHNPDT-----WEMETNKSQLRTVDDILQEALRYK 74

Query: 82  EKEGRY--CVLTGGEPLLQVDVPLIQAL---NKRGFEIAVET 118
              G      ++GGE LLQ+D  LI       + G    ++T
Sbjct: 75  GFWGNKGGITVSGGEALLQIDF-LIAFFTKAKELGIHCTLDT 115


>gi|302035939|ref|YP_003796261.1| radical SAM superfamily protein [Candidatus Nitrospira defluvii]
 gi|300604003|emb|CBK40335.1| radical SAM superfamily protein, putative Coenzyme PQQ synthesis
           protein E [Candidatus Nitrospira defluvii]
          Length = 467

 Score = 37.7 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 16/91 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C  D     G      + ++   LI++     +      V+T
Sbjct: 59  CNL-----------KCDHCYLDATTKAGGGSDELSTEECFRLIDQIAEVNKGC--LLVIT 105

Query: 92  GGEPLLQVDVPLIQALNK--RGFEIAVETNG 120
           GGEPL++ D+ L  A +    GF +   TNG
Sbjct: 106 GGEPLVRPDI-LDIARHAVGLGFIVVFGTNG 135


>gi|206901063|ref|YP_002250105.1| radical SAM domain protein [Dictyoglomus thermophilum H-6-12]
 gi|206740166|gb|ACI19224.1| radical SAM domain protein [Dictyoglomus thermophilum H-6-12]
          Length = 465

 Score = 37.7 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 44  SAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101
           + +C + C   +             D +  ++EE +  G    R   LTGGEP +  ++ 
Sbjct: 135 TYRCNYQCKHCYNNSSIYMLSEMKTDVILSILEEAYKLG---IREIELTGGEPTVYSNIE 191

Query: 102 PLIQALNKRGFE-IAVETNGT 121
             ++ L    FE I + TNG+
Sbjct: 192 EFLKKLFTYNFELIGLLTNGS 212


>gi|167747476|ref|ZP_02419603.1| hypothetical protein ANACAC_02197 [Anaerostipes caccae DSM 14662]
 gi|167652838|gb|EDR96967.1| hypothetical protein ANACAC_02197 [Anaerostipes caccae DSM 14662]
          Length = 362

 Score = 37.7 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 15/102 (14%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       R S  C          +    G     Q  D+  +    G     + +L 
Sbjct: 69  CNLHCKGCYARASGACA---------EELHEGELTGAQWDDIFGQAEKLG---ISFILLA 116

Query: 92  GGEPLLQVDVPLIQALNKRG-FEIAVETNGTIEPPQGIDWIC 132
           GGEPL++ DV      +K+  F +   TNGTI     +    
Sbjct: 117 GGEPLMRRDVIESAGRHKKVIFPVF--TNGTIMQEDCLTLFS 156


>gi|121534167|ref|ZP_01665992.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
 gi|121307270|gb|EAX48187.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
          Length = 413

 Score = 37.7 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 11/90 (12%)

Query: 46  QCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPL 103
           +C  C   +       G      D+   LI E    G    ++    GGEPLL      L
Sbjct: 109 RCLHC---YATSGPCAGYDAVPHDRWLSLITEARQAGATAIQFI---GGEPLLYPRWQEL 162

Query: 104 IQALNKRGFEIAVE--TNGTIEPPQGIDWI 131
            Q   + G+E  +E  TN T+     I ++
Sbjct: 163 AQRARQDGYE-FIEIFTNATLIDDDCIKFV 191


>gi|330834762|ref|YP_004409490.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4]
 gi|329566901|gb|AEB95006.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4]
          Length = 324

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 25/93 (26%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C FC  + + G         + +QL  +I+             VL
Sbjct: 37  CNL-----------RCTFCNPSYYSGTLEEG----STEQLKKVIDNL------RSSVIVL 75

Query: 91  T--GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           +  GGEP  + D + L++  +   F + + TNG
Sbjct: 76  SFEGGEPTTRPDILELLKYAHDGSFYVMLTTNG 108


>gi|329935779|ref|ZP_08285583.1| Transcriptional regulator [Streptomyces griseoaurantiacus M045]
 gi|329304770|gb|EGG48644.1| Transcriptional regulator [Streptomyces griseoaurantiacus M045]
          Length = 797

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 11/66 (16%)

Query: 40 QDRLSAQCRFCDTDFVGIQGTKGGR-----YNVDQL---ADLIEEQWITGEKEGRYCVLT 91
            R   +C  C   +V     +  R      + D L   A  I E  +       + VL 
Sbjct: 16 HSRCDLRCDHC---YVYTHADRSWRGRPVTMSEDTLRLAAARIAEHAVAHRLPRVHVVLH 72

Query: 92 GGEPLL 97
          GGEPLL
Sbjct: 73 GGEPLL 78


>gi|322384052|ref|ZP_08057775.1| Fe-S oxidoreductase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321151249|gb|EFX44543.1| Fe-S oxidoreductase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 374

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 23/99 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN+            C   DT    +  ++G +  +D +   ++E      +      +T
Sbjct: 44  CNMRC--------EHCAVGDT----LTASEGSKLPLDLIFKRLDEV-----EHLETISIT 86

Query: 92  GGEPLLQVD------VPLIQALNKRGFEIAVETNGTIEP 124
           GGEP   +       +PL++   +RG    + +N T++ 
Sbjct: 87  GGEPTFHLKTVKDIIIPLLKYAKERGVRSQLNSNLTLDL 125


>gi|269120295|ref|YP_003308472.1| molybdenum cofactor biosynthesis protein A [Sebaldella termitidis
           ATCC 33386]
 gi|268614173|gb|ACZ08541.1| molybdenum cofactor biosynthesis protein A [Sebaldella termitidis
           ATCC 33386]
          Length = 327

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 12/94 (12%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +C +C  +F      +     +D+   LI      G K+ R   +TG
Sbjct: 10  NYLRVSVTDRCNLRCVYCLPEFSKDFIDESKLLTIDEYFRLIRILGNLGIKKVR---ITG 66

Query: 93  GEPLLQVDVP-LIQALNKRGFEIAVE-----TNG 120
           GEPL++  +P LI+++N       +E     TNG
Sbjct: 67  GEPLVRRGIPGLIKSINNLE---NIEETAMTTNG 97


>gi|224543515|ref|ZP_03684054.1| hypothetical protein CATMIT_02724 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523642|gb|EEF92747.1| hypothetical protein CATMIT_02724 [Catenibacterium mitsuokai DSM
           15897]
          Length = 439

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 22/97 (22%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            +GCN           A+C +C       +G    R N+D  A  + E            
Sbjct: 95  TTGCN-----------ARCYYC-----FEKGAVQKRMNLDT-ARAVAEYIFQNHDPEHLV 137

Query: 89  V-LTGGEPLLQVDV--PLIQALNKRG--FEIAVETNG 120
           +   GGEPLL+      +++ L+ RG  F+  + TNG
Sbjct: 138 IQWFGGEPLLEPKTISYIVEYLSSRGVSFDSKIITNG 174


>gi|222445142|ref|ZP_03607657.1| hypothetical protein METSMIALI_00763 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434707|gb|EEE41872.1| hypothetical protein METSMIALI_00763 [Methanobrevibacter smithii
           DSM 2375]
          Length = 498

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGRYCV 89
           CNL           +C  C   F       G  Y    D++ +++               
Sbjct: 96  CNL-----------RCPVC---FAN-AAVSGRLYEPTQDEIREMLRNLRNLKPHPTPAIQ 140

Query: 90  LTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
             GGEP ++ D+  L+    + GF  + + TNG
Sbjct: 141 YAGGEPTVRKDLVELVAMAKEEGFTHVQIATNG 173


>gi|163759697|ref|ZP_02166782.1| molybdenum cofactor biosynthesis protein A [Hoeflea phototrophica
           DFL-43]
 gi|162283294|gb|EDQ33580.1| molybdenum cofactor biosynthesis protein A [Hoeflea phototrophica
           DFL-43]
          Length = 345

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 54/151 (35%), Gaps = 24/151 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C    +    T   + ++  L +L     +  EK  R   LTGGEPL++ +
Sbjct: 34  DRCDFRCTYC----MAENMTFLPKKDLLTLEELDRLCTVFVEKGVRKIRLTGGEPLVRKN 89

Query: 101 V-PLIQAL---NKRGF--EIAVETNG---TIEPPQGID---------WICVSPKAGCDLK 142
           +  LI+ L      G   E+ + TNG   T    +  D            + P       
Sbjct: 90  IMQLIRGLSRHIDAGRMDEVTLTTNGSQLTRFASELYDCGVRRINVSIDTLDPDKFRQ-- 147

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
           I    EL  V   V  +    +       +L
Sbjct: 148 ITRWGELAKVLDGVAAAQAAGLKIKINAVAL 178


>gi|148642909|ref|YP_001273422.1| molybdenum cofactor biosynthesis-related protein, MoaA
           [Methanobrevibacter smithii ATCC 35061]
 gi|148551926|gb|ABQ87054.1| molybdenum cofactor biosynthesis-related protein, MoaA
           [Methanobrevibacter smithii ATCC 35061]
          Length = 498

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGRYCV 89
           CNL           +C  C   F       G  Y    D++ +++               
Sbjct: 96  CNL-----------RCPVC---FAN-AAVSGRLYEPTQDEIREMLRNLRNLKPHPTPAIQ 140

Query: 90  LTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
             GGEP ++ D+  L+    + GF  + + TNG
Sbjct: 141 YAGGEPTVRKDLVELVAMAKEEGFTHVQIATNG 173


>gi|90406682|ref|ZP_01214875.1| pyruvate formate-lyase activating enzyme [Psychromonas sp. CNPT3]
 gi|90312135|gb|EAS40227.1| pyruvate formate-lyase activating enzyme [Psychromonas sp. CNPT3]
          Length = 288

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 46/149 (30%)

Query: 22  RVAVFCRFSGCNLWSGREQD------------------------------RLSAQCRFCD 51
           R  +F    GCN       +                                S  C  CD
Sbjct: 25  RAVIF--LQGCNYQCKTCHNPQTINICDHCALCVAPCPAQALTVVSGKVVWDSQLCIGCD 82

Query: 52  --TDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQA 106
              D    Q +    R++V QL + ++E+ +          L+GGE  LQ+   + L +A
Sbjct: 83  NCIDICPTQSSPKVRRHSVRQLLERLKEKQMFLSG----VTLSGGESTLQLPFIIELFKA 138

Query: 107 LNK----RGFEIAVETNGTIEPPQGIDWI 131
           +            +++NG++   QG D +
Sbjct: 139 IKSCPELSHLTCFIDSNGSLSA-QGWDRV 166


>gi|30018672|ref|NP_830303.1| thioredoxin-like oxidoreductase [Bacillus cereus ATCC 14579]
 gi|228956898|ref|ZP_04118679.1| dehydrogenase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229108087|ref|ZP_04237712.1| dehydrogenase [Bacillus cereus Rock1-15]
 gi|229125914|ref|ZP_04254939.1| dehydrogenase [Bacillus cereus BDRD-Cer4]
 gi|229143207|ref|ZP_04271639.1| dehydrogenase [Bacillus cereus BDRD-ST24]
 gi|296501246|ref|YP_003662946.1| thioredoxin-like oxidoreductase [Bacillus thuringiensis BMB171]
 gi|29894213|gb|AAP07504.1| Thioredoxin-like oxidoreductases [Bacillus cereus ATCC 14579]
 gi|228640288|gb|EEK96686.1| dehydrogenase [Bacillus cereus BDRD-ST24]
 gi|228657572|gb|EEL13385.1| dehydrogenase [Bacillus cereus BDRD-Cer4]
 gi|228675362|gb|EEL30581.1| dehydrogenase [Bacillus cereus Rock1-15]
 gi|228802741|gb|EEM49577.1| dehydrogenase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|296322298|gb|ADH05226.1| thioredoxin-like oxidoreductase [Bacillus thuringiensis BMB171]
          Length = 375

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|326772988|ref|ZP_08232272.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Actinomyces viscosus C505]
 gi|326637620|gb|EGE38522.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Actinomyces viscosus C505]
          Length = 236

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 36/124 (29%), Gaps = 26/124 (20%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
              VF    GC              C +C       +     R       + +       
Sbjct: 19  TATVF--LQGCP-----------WNCFYC-----HNRDLIPARTPGQVAWEEVRALLRRR 60

Query: 82  EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-------PQGIDWICV 133
                  VLTGGE L Q  +    + +   GF++ + T G              +DW+ +
Sbjct: 61  RGLLDGVVLTGGEALRQDALADAAREVIDMGFQVGLHTAGPYPRRLRDMIEAGFVDWVGL 120

Query: 134 SPKA 137
             KA
Sbjct: 121 DIKA 124


>gi|256397055|ref|YP_003118619.1| radical SAM domain-containing protein [Catenulispora acidiphila DSM
           44928]
 gi|256363281|gb|ACU76778.1| Radical SAM domain protein [Catenulispora acidiphila DSM 44928]
          Length = 794

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 33/113 (29%), Gaps = 23/113 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL----ADLIEEQWITGEKEGRY 87
           C+L         +A   +              R+  D++    A+ I E           
Sbjct: 18  CDLACDHCYVYEAADTSW----------RHKPRFMTDEIVRRTAERIAEHATAHRLPAVA 67

Query: 88  CVLTGGEPLL-------QVDVPLIQALNKRGFEI--AVETNGTIEPPQGIDWI 131
            VL GGEPLL            L   +   G  +   + TNG     +  D  
Sbjct: 68  LVLHGGEPLLLGPTRMRATLTTLRDVIESAGCAVDLRIHTNGVRLTSEYCDLF 120


>gi|269957895|ref|YP_003327684.1| Radical SAM domain-containing protein [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269306576|gb|ACZ32126.1| Radical SAM domain protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 376

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP- 102
              CR C      ++    G     Q   ++++    G+    + V+TGG+PL + D+  
Sbjct: 40  GLACRHC--RAEAVRQPLPGELTTRQALAVLDQIQGFGD-PLPHVVMTGGDPLRRADLDL 96

Query: 103 LIQALNKRGFEIAV 116
           LI A  +RG  +++
Sbjct: 97  LIDAATERGIGVSL 110


>gi|323700863|ref|ZP_08112775.1| Radical SAM domain protein [Desulfovibrio sp. ND132]
 gi|323460795|gb|EGB16660.1| Radical SAM domain protein [Desulfovibrio desulfuricans ND132]
          Length = 397

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 20/97 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGR 86
              CNL           +C  C   +       G +   + DQ  ++I++     +    
Sbjct: 47  TQRCNL-----------KCVHC---YAQAIDPSGHKDPISTDQAKEMIDDL---AQFGAP 89

Query: 87  YCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122
             + +GGEPL+ +  V L +    +G    + TNGT+
Sbjct: 90  VLLFSGGEPLVREDLVELAKYATTQGMRAVISTNGTL 126


>gi|300312938|ref|YP_003777030.1| molybdenum cofactor biosynthesis enzyme A protein [Herbaspirillum
           seropedicae SmR1]
 gi|300075723|gb|ADJ65122.1| molybdenum cofactor biosynthesis enzyme A protein [Herbaspirillum
           seropedicae SmR1]
          Length = 333

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 41  DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR   +C +C      G +         D+++ ++      G    R   LTGGEPLL+ 
Sbjct: 28  DRCDLRCSYCLPKGHTGFE-EPQNWLRFDEISRVVAAFARLGAGRVR---LTGGEPLLRR 83

Query: 100 DVPLIQA 106
            +  + A
Sbjct: 84  GLATLAA 90


>gi|296875656|ref|ZP_06899725.1| probable transcriptional regulator [Streptococcus parasanguinis
           ATCC 15912]
 gi|296433340|gb|EFH19118.1| probable transcriptional regulator [Streptococcus parasanguinis
           ATCC 15912]
          Length = 431

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 13/84 (15%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-----QVD 100
           +C++C   +   +         D +   ++E+  +G+ +       GGEPLL     +  
Sbjct: 92  RCKYC---YEKFENIAMSTETEDAIVQFLKEKLQSGKYKYLSVGWFGGEPLLGYKTIKRL 148

Query: 101 VPLIQALNKRGFEIA----VETNG 120
            P+   L ++ ++I     + TNG
Sbjct: 149 SPVFIDLCEK-YQIHYQSAITTNG 171


>gi|291294660|ref|YP_003506058.1| molybdenum cofactor biosynthesis protein A [Meiothermus ruber DSM
           1279]
 gi|290469619|gb|ADD27038.1| molybdenum cofactor biosynthesis protein A [Meiothermus ruber DSM
           1279]
          Length = 331

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 17/91 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C       Q    G  +V+     +    + G +  R+   T
Sbjct: 29  CNL-----------HCLYC-HPLGWEQSEPPGTISVEDTRHFLRAMQLLGLESVRF---T 73

Query: 92  GGEPLLQVDVP-LIQALNKRGFE-IAVETNG 120
           GGEPL++ ++P +I A ++ G   IA+ TNG
Sbjct: 74  GGEPLVRKELPQMIAAASELGIPDIAITTNG 104


>gi|159044234|ref|YP_001533028.1| hypothetical protein Dshi_1685 [Dinoroseobacter shibae DFL 12]
 gi|157911994|gb|ABV93427.1| hypothetical protein Dshi_1685 [Dinoroseobacter shibae DFL 12]
          Length = 314

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 8/89 (8%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCVLT 91
           LW        + +C  C   ++    T          ++ D +++         R    T
Sbjct: 34  LWFNT-GTLCNIECANC---YIESSPTNDRLVYITAAEVTDYLDQLEDRNW-GVREIAFT 88

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETN 119
           GGEP +  + + + +A   RG+E+ + TN
Sbjct: 89  GGEPFMNPEMIEMTEAALARGYEVLILTN 117


>gi|119714837|ref|YP_921802.1| molybdenum cofactor biosynthesis protein A [Nocardioides sp. JS614]
 gi|119535498|gb|ABL80115.1| GTP cyclohydrolase subunit MoaA [Nocardioides sp. JS614]
          Length = 329

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C     G+      +    D++  LI           R    TGGEPLL+ 
Sbjct: 22  DRCNLRCNYC-MPAEGLDWLPTEQTLTDDEIVRLI--TIGVEMLGIREVRFTGGEPLLRR 78

Query: 100 -DVPLIQALNKRGFEIAVETN 119
             V ++   +  G E ++ TN
Sbjct: 79  GLVDIVARTHALGVETSLTTN 99


>gi|315634328|ref|ZP_07889615.1| molybdenum cofactor biosynthesis protein A [Aggregatibacter segnis
           ATCC 33393]
 gi|315476918|gb|EFU67663.1| molybdenum cofactor biosynthesis protein A [Aggregatibacter segnis
           ATCC 33393]
          Length = 337

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D  + +C +C  D    +  K     +D++  L+    + G ++ R   +TGGEP L+ D
Sbjct: 31  DVCNFRCNYCLPDGYQPEPNKPSFLTLDEIRRLVSSFAVMGTEKVR---ITGGEPTLRKD 87

Query: 101 -VPLIQALNKRG--FEIAVETNG 120
            +P+++++       +IA+ TNG
Sbjct: 88  FLPIVESIRGIDGIKQIALTTNG 110


>gi|307354426|ref|YP_003895477.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
          DSM 11571]
 gi|307157659|gb|ADN37039.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 387

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 21/69 (30%)

Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
          GC            ++CR+C             R ++D + D++   W+   K+ +    
Sbjct: 14 GCP-----------SRCRYC-----WSSDVNSPRMSIDTIKDVVA--WMKDLKDNQ-VTF 54

Query: 91 T--GGEPLL 97
          T  GGEPLL
Sbjct: 55 TFHGGEPLL 63


>gi|262369556|ref|ZP_06062884.1| molybdopterin biosynthesis protein [Acinetobacter johnsonii SH046]
 gi|262315624|gb|EEY96663.1| molybdopterin biosynthesis protein [Acinetobacter johnsonii SH046]
          Length = 331

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 44  SAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVD 100
           + +C +C  DT           + ++    +L+    +      R+  LTGGEPL+ Q  
Sbjct: 32  TDRCSYCMPDTP------EWLAKKDILSFEELLTFCEMMVSLGIRHIRLTGGEPLMRQGV 85

Query: 101 VPLIQAL 107
           V  I AL
Sbjct: 86  VNFIDAL 92


>gi|228952519|ref|ZP_04114596.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228807130|gb|EEM53672.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 337

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  F+  +         +++  L       G  + R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPDYAFLQEEC----LLTFNEIERLARLFISMGVNKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQAL-NKRGFE-IAVETNG 120
           GEPLL+ D+P LI  L N  G + I + TNG
Sbjct: 75  GEPLLRKDLPKLIARLTNLEGLKDIGLTTNG 105


>gi|229079338|ref|ZP_04211882.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock4-2]
 gi|228704006|gb|EEL56448.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock4-2]
          Length = 333

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 18/91 (19%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  F+  +         +++  L       G  + R   LTG
Sbjct: 18  DRCNFRCTYCMPAEVFGPDYAFLQEEC----LLTFNEIERLARLFISMGVNKIR---LTG 70

Query: 93  GEPLLQVDVP-LIQAL-NKRGFE-IAVETNG 120
           GEPLL+ D+P LI  L N  G + I + TNG
Sbjct: 71  GEPLLRKDLPKLIARLTNLEGLKDIGLTTNG 101


>gi|229020961|ref|ZP_04177648.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1273]
 gi|229023633|ref|ZP_04180126.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1272]
 gi|228737669|gb|EEL88172.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1272]
 gi|228740314|gb|EEL90625.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1273]
          Length = 306

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 53  DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-R 110
           D+  +Q         D++  L       G  + R   LTGGEPLL+ D+P LI  L K  
Sbjct: 9   DYAFLQEEF--LLTFDEIERLARLFISMGVNKIR---LTGGEPLLRKDLPKLIARLAKLE 63

Query: 111 GFE-IAVETNG 120
           G + I + TNG
Sbjct: 64  GLKDIGLTTNG 74


>gi|119872519|ref|YP_930526.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM
           4184]
 gi|119673927|gb|ABL88183.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 573

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 6/90 (6%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           L      +R +  C  C   F             ++Q+  ++               L+G
Sbjct: 147 LAIIDVTNRCNMACPIC---FANAGAAGYVYEPTLEQIEYMLRTLRAQKPWAPNAVQLSG 203

Query: 93  GEPLLQVDVPLIQALNKRGFEIAVE--TNG 120
           GEP L+ D+P I  + KR   + VE  TNG
Sbjct: 204 GEPTLRDDLPEIIRIAKRLGFVHVEVNTNG 233


>gi|291455502|ref|ZP_06594892.1| molybdenum cofactor biosynthesis protein A [Streptomyces albus
           J1074]
 gi|291358451|gb|EFE85353.1| molybdenum cofactor biosynthesis protein A [Streptomyces albus
           J1074]
          Length = 326

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C     G+    K G    D++  L+     T         LTGGEPLL+ 
Sbjct: 18  DRCNLRCAYC-MPAEGLDWLPKAGLLTDDEVVRLVS--TATRRLGITEVRLTGGEPLLRR 74

Query: 100 DVP-LIQAL--NKRGFEIAVETNG 120
            +P L+  L       E+++ TNG
Sbjct: 75  GLPALVARLTALDPAPELSLTTNG 98


>gi|316932978|ref|YP_004107960.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Rhodopseudomonas palustris DX-1]
 gi|315600692|gb|ADU43227.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Rhodopseudomonas palustris DX-1]
          Length = 386

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C                R    +  D  EE             + 
Sbjct: 38  CNLAC--------AGCG----KIDYPDAILNRRMTAQECWDAAEECG------APMVAIP 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+  ++  +++ L  R   +++ TN  +   + +     SP     + + G +E
Sbjct: 80  GGEPLIHKEIGEIVRGLVARKKFVSLCTN-ALLLEKKLHLFEPSPYLFFSVHLDGLKE 136


>gi|239983692|ref|ZP_04706216.1| molybdenum cofactor biosynthesis protein A [Streptomyces albus
           J1074]
          Length = 335

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C     G+    K G    D++  L+     T         LTGGEPLL+ 
Sbjct: 27  DRCNLRCAYC-MPAEGLDWLPKAGLLTDDEVVRLVS--TATRRLGITEVRLTGGEPLLRR 83

Query: 100 DVP-LIQAL--NKRGFEIAVETNG 120
            +P L+  L       E+++ TNG
Sbjct: 84  GLPALVARLTALDPAPELSLTTNG 107


>gi|153003729|ref|YP_001378054.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027302|gb|ABS25070.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter sp.
           Fw109-5]
          Length = 351

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 15/86 (17%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR + +C +C         +       D L   A+L     +      R   LTGGEP L
Sbjct: 49  DRCNFRCTYC---------SPAAHEPPDALLSRAELARLFRLFAALGVRRVRLTGGEPTL 99

Query: 98  QVD-VPLI-QALNKRGFE-IAVETNG 120
           + D V L+  A    G E +A+ TNG
Sbjct: 100 RKDVVELVADAAGTPGIEDVAITTNG 125


>gi|222152595|ref|YP_002561770.1| pyruvate formate-lyase activating enzyme [Streptococcus uberis
           0140J]
 gi|222113406|emb|CAR41070.1| pyruvate formate-lyase activating enzyme [Streptococcus uberis
           0140J]
          Length = 263

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 34/124 (27%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
            E F ++ G G          RF     GC             +C++C         T  
Sbjct: 16  TESFGSVDGPG---------IRFIIFMQGC-----------KMRCQYCHNPDTWEMETNK 55

Query: 63  GRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQAL----NKRGFEIAV 116
            R     ++D+++E        G+     ++GGE +LQ+D   I AL     K G    +
Sbjct: 56  SR--ERTVSDVLKEALQYRHFWGKNGGITVSGGEAMLQID--FITALFIEAKKLGIHTTL 111

Query: 117 ETNG 120
           +T G
Sbjct: 112 DTCG 115


>gi|116071861|ref|ZP_01469129.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp.
           BL107]
 gi|116065484|gb|EAU71242.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp.
           BL107]
          Length = 303

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 13/79 (16%)

Query: 69  QLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQAL---NKRGF-EIAVETNGTIE 123
            L D +    +          LTGGEPLL     PL+ A+      G  E+A+ TNG + 
Sbjct: 3   DLQDQLRLIRVACSLGVHTVRLTGGEPLLSDRLEPLLAAIAFDRPAGLKELALTTNGVLL 62

Query: 124 PPQ--------GIDWICVS 134
            P+        G+D I +S
Sbjct: 63  SPERALRLKRAGLDRITIS 81


>gi|46200290|ref|YP_005957.1| molybdenum cofactor biosynthesis protein A [Thermus thermophilus
           HB27]
 gi|46197918|gb|AAS82330.1| molybdenum cofactor biosynthesis protein A [Thermus thermophilus
           HB27]
          Length = 341

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C            G   V+++   +E   + G    R+   T
Sbjct: 38  CNL-----------HCLYC-HPLGLEMREPPGTLTVEEVDRFLEAASLLGLSSVRF---T 82

Query: 92  GGEPLLQVDVPLI--QALNKRGFE-IAVETNG 120
           GGEPL++ ++P +  +A  K G E +A+ TNG
Sbjct: 83  GGEPLVRKELPEMIARARAKEGVEDVAITTNG 114


>gi|30794977|ref|NP_851427.1| pyrroloquinoline quinone biosynthesis protein PqqE [Streptomyces
           rochei]
 gi|32363222|sp|P59749|PQQE_STRRO RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|30698350|dbj|BAC76463.1| pyrroloquinoline quinone biosynthesis protein E [Streptomyces
           rochei]
          Length = 364

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R    C +C      ++         +Q  D++ +    G  +  +   +GGEPL + D+
Sbjct: 19  RCPLHCPYCSNPLELVRRE--AELTCEQWTDILTQARELGVVQMHF---SGGEPLARPDL 73

Query: 102 P-LIQALNKRGFEIAVETNG 120
           P L+    + G  + + T+G
Sbjct: 74  PDLVGHARRLGAYVNLVTSG 93


>gi|303233841|ref|ZP_07320494.1| molybdenum cofactor biosynthesis protein A [Finegoldia magna
           BVS033A4]
 gi|302495036|gb|EFL54789.1| molybdenum cofactor biosynthesis protein A [Finegoldia magna
           BVS033A4]
          Length = 315

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D+ + +C++C  +             +D+   ++E     G K+ R   LTGGEPL++  
Sbjct: 18  DKCNLRCKYCMPEEGIAHLNHDEILTIDETLKIVEVFKDLGIKKVR---LTGGEPLVRNG 74

Query: 101 -VPLIQALNKRGF-EIAVETN 119
            + L++ +   G  EI + TN
Sbjct: 75  ILDLVKGIKDMGIEEICMTTN 95


>gi|215402669|ref|ZP_03414850.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis 02_1987]
 gi|289744599|ref|ZP_06503977.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis 02_1987]
 gi|289685127|gb|EFD52615.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis 02_1987]
          Length = 322

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 16/106 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-Q 98
           DR + +C +C     G++   G +    D+LA LI                TGGEPLL  
Sbjct: 47  DRCNLRCSYC-MPERGLRWLPGEQLLRPDELARLI--HIAVTRLGVTSVRFTGGEPLLAH 103

Query: 99  VDVPLIQA---LNKRGFEIAVETNGT-------IEPPQGIDWICVS 134
               ++ A   L  R  EI++ TNG             G+D + VS
Sbjct: 104 HLDEVVAATARLRPRP-EISLTTNGVGLARRAGALAEAGLDRVNVS 148


>gi|254473488|ref|ZP_05086885.1| molybdenum cofactor biosynthesis protein A [Pseudovibrio sp. JE062]
 gi|211957604|gb|EEA92807.1| molybdenum cofactor biosynthesis protein A [Pseudovibrio sp. JE062]
          Length = 344

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 10/87 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C ++ +     K    +V  L +L     +  EK  R   LTGGEPL++ +
Sbjct: 33  DRCDLRCVYCMSEHMTFLPKK----DVLSLEELDRLCTVFIEKGVRKIRLTGGEPLVRKN 88

Query: 101 V-PLIQALNKR---GF--EIAVETNGT 121
           +   I+ L +    G   E+ + TNGT
Sbjct: 89  IMSFIRGLKRHLDGGALDELTITTNGT 115


>gi|120602623|ref|YP_967023.1| radical SAM domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|120562852|gb|ABM28596.1| Radical SAM domain protein [Desulfovibrio vulgaris DP4]
          Length = 543

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 32/111 (28%), Gaps = 23/111 (20%)

Query: 31  GCNLWSGRE--------------QDRLSAQCRFC------DTDFVGIQGTKGGRYNVDQL 70
           GC    G                  R + +CR+C      D           G   +  L
Sbjct: 81  GCPFDCGLCPQHNQHTCTAVFEVTTRCNLRCRYCFAAAQDDETQTLQPSAHVGDPPLHTL 140

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
             L+E              L+GGEP L      ++    +    + + TNG
Sbjct: 141 VALLEAVRQKTGPC--NIQLSGGEPTLRHDLCDIVSHARRLFPFVQLNTNG 189


>gi|15608009|ref|NP_215384.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis H37Rv]
 gi|15840282|ref|NP_335319.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis CDC1551]
 gi|31792057|ref|NP_854550.1| molybdenum cofactor biosynthesis protein A [Mycobacterium bovis
           AF2122/97]
 gi|121636792|ref|YP_977015.1| molybdenum cofactor biosynthesis protein A [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148660646|ref|YP_001282169.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis H37Ra]
 gi|148822077|ref|YP_001286831.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis F11]
 gi|215402665|ref|ZP_03414846.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis 02_1987]
 gi|215410454|ref|ZP_03419262.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215426132|ref|ZP_03424051.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis T92]
 gi|215429726|ref|ZP_03427645.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis EAS054]
 gi|215445008|ref|ZP_03431760.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis T85]
 gi|218752534|ref|ZP_03531330.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis GM 1503]
 gi|219556731|ref|ZP_03535807.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis T17]
 gi|224989263|ref|YP_002643950.1| molybdenum cofactor biosynthesis protein A [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253800109|ref|YP_003033110.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis KZN 1435]
 gi|254231177|ref|ZP_04924504.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis C]
 gi|254363801|ref|ZP_04979847.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254549845|ref|ZP_05140292.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260185764|ref|ZP_05763238.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis CPHL_A]
 gi|260199888|ref|ZP_05767379.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis T46]
 gi|260204066|ref|ZP_05771557.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis K85]
 gi|289442278|ref|ZP_06432022.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis T46]
 gi|289446434|ref|ZP_06436178.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289555350|ref|ZP_06444560.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis KZN 605]
 gi|289568832|ref|ZP_06449059.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis T17]
 gi|289573491|ref|ZP_06453718.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis K85]
 gi|289744595|ref|ZP_06503973.1| molybdenum cofactor biosynthesis protein A 2 [Mycobacterium
           tuberculosis 02_1987]
 gi|289749389|ref|ZP_06508767.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis T92]
 gi|289752924|ref|ZP_06512302.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis EAS054]
 gi|289756954|ref|ZP_06516332.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis T85]
 gi|289761000|ref|ZP_06520378.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis GM 1503]
 gi|294996349|ref|ZP_06802040.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis 210]
 gi|297633386|ref|ZP_06951166.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis KZN 4207]
 gi|297730371|ref|ZP_06959489.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis KZN R506]
 gi|298524362|ref|ZP_07011771.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306774993|ref|ZP_07413330.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis SUMu001]
 gi|306782092|ref|ZP_07420429.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis SUMu002]
 gi|306783537|ref|ZP_07421859.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis SUMu003]
 gi|306787902|ref|ZP_07426224.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis SUMu004]
 gi|306792243|ref|ZP_07430545.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis SUMu005]
 gi|306796641|ref|ZP_07434943.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis SUMu006]
 gi|306802528|ref|ZP_07439196.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis SUMu008]
 gi|306806710|ref|ZP_07443378.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis SUMu007]
 gi|306966906|ref|ZP_07479567.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis SUMu009]
 gi|306971101|ref|ZP_07483762.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis SUMu010]
 gi|307078829|ref|ZP_07487999.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis SUMu011]
 gi|307083389|ref|ZP_07492502.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis SUMu012]
 gi|313657697|ref|ZP_07814577.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis KZN V2475]
 gi|54037809|sp|P65385|MOAA2_MYCBO RecName: Full=Molybdenum cofactor biosynthesis protein A 2
 gi|54041469|sp|P65384|MOAA2_MYCTU RecName: Full=Molybdenum cofactor biosynthesis protein A 2
 gi|2916928|emb|CAA17675.1| PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A2 MOAA2
           [Mycobacterium tuberculosis H37Rv]
 gi|13880443|gb|AAK45133.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis CDC1551]
 gi|31617644|emb|CAD93754.1| PUTATIVE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A2 MOAA2
           [Mycobacterium bovis AF2122/97]
 gi|121492439|emb|CAL70907.1| Putative molybdenum cofactor biosynthesis protein A2 moaA2
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124600236|gb|EAY59246.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis C]
 gi|134149315|gb|EBA41360.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504798|gb|ABQ72607.1| molybdenum cofactor biosynthesis protein A2 [Mycobacterium
           tuberculosis H37Ra]
 gi|148720604|gb|ABR05229.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis F11]
 gi|224772376|dbj|BAH25182.1| molybdenum cofactor biosynthesis protein A [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253321612|gb|ACT26215.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis KZN 1435]
 gi|289415197|gb|EFD12437.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis T46]
 gi|289419392|gb|EFD16593.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289439982|gb|EFD22475.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis KZN 605]
 gi|289537922|gb|EFD42500.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis K85]
 gi|289542586|gb|EFD46234.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis T17]
 gi|289685123|gb|EFD52611.1| molybdenum cofactor biosynthesis protein A 2 [Mycobacterium
           tuberculosis 02_1987]
 gi|289689976|gb|EFD57405.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis T92]
 gi|289693511|gb|EFD60940.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis EAS054]
 gi|289708506|gb|EFD72522.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis GM 1503]
 gi|289712518|gb|EFD76530.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis T85]
 gi|298494156|gb|EFI29450.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308216488|gb|EFO75887.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis SUMu001]
 gi|308325208|gb|EFP14059.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis SUMu002]
 gi|308331698|gb|EFP20549.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis SUMu003]
 gi|308335463|gb|EFP24314.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis SUMu004]
 gi|308339261|gb|EFP28112.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis SUMu005]
 gi|308342938|gb|EFP31789.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis SUMu006]
 gi|308346823|gb|EFP35674.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis SUMu007]
 gi|308350740|gb|EFP39591.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis SUMu008]
 gi|308355401|gb|EFP44252.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis SUMu009]
 gi|308359353|gb|EFP48204.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis SUMu010]
 gi|308363260|gb|EFP52111.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis SUMu011]
 gi|308366917|gb|EFP55768.1| molybdenum cofactor biosynthesis protein A [Mycobacterium
           tuberculosis SUMu012]
 gi|323720692|gb|EGB29769.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis CDC1551A]
 gi|326904911|gb|EGE51844.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis W-148]
 gi|328459847|gb|AEB05270.1| molybdenum cofactor biosynthesis protein A2 moaA2 [Mycobacterium
           tuberculosis KZN 4207]
          Length = 360

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 16/106 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-Q 98
           DR + +C +C     G++   G +    D+LA LI                TGGEPLL  
Sbjct: 47  DRCNLRCSYC-MPERGLRWLPGEQLLRPDELARLI--HIAVTRLGVTSVRFTGGEPLLAH 103

Query: 99  VDVPLIQA---LNKRGFEIAVETNGT-------IEPPQGIDWICVS 134
               ++ A   L  R  EI++ TNG             G+D + VS
Sbjct: 104 HLDEVVAATARLRPRP-EISLTTNGVGLARRAGALAEAGLDRVNVS 148


>gi|317062972|ref|ZP_07927457.1| molybdenum cofactor biosynthesis protein A [Fusobacterium ulcerans
           ATCC 49185]
 gi|313688648|gb|EFS25483.1| molybdenum cofactor biosynthesis protein A [Fusobacterium ulcerans
           ATCC 49185]
          Length = 327

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 22/167 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D+ + +C +C  +       K      +++  +       G K+ +   +TGGEPL++ +
Sbjct: 21  DKCNLKCIYCMPEESVESIEKDELLTFEEIERICIAAAEIGIKKIK---ITGGEPLIRKE 77

Query: 101 VP-LIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVSPKAGCDLKIKGGQE-- 148
           V  L++ +   +G E + + TNG +           GID I +S      LK K   E  
Sbjct: 78  VAGLVKKIKLIKGIENVTLTTNGILLEKNIEELAQAGIDGINIS---LDSLKEKKYHEIT 134

Query: 149 ----LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191
               LK V   +       I        ++ ++   + E   LA  Y
Sbjct: 135 RCGYLKDVLSGIESVVNKKIKLKLNCVIIKNINEDEIIEIAGLAQKY 181


>gi|306820795|ref|ZP_07454420.1| radical SAM domain protein [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551185|gb|EFM39151.1| radical SAM domain protein [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 457

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 33/115 (28%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVD---QLADLIEEQWITGEKEGR 86
           CNL           +C +C   F       G +   +++   +  D + E   +G +   
Sbjct: 105 CNL-----------RCSYC---FASQGDFGGDKEIMSLEVGKKALDYLVEH--SGNRRNL 148

Query: 87  YCVLTGGEPLLQVDVPLIQALNKRG----------FEIAVETNGTIEPPQGIDWI 131
                GGEPL+  +  +++ L   G          F   + TNG +     I++I
Sbjct: 149 EVDFFGGEPLM--NFEVVKQLVDYGNKIAGEKNKNFRFTITTNGVLLSDDKIEYI 201


>gi|294815938|ref|ZP_06774581.1| pyrroloquinoline quinone biosynthesis protein PqqE [Streptomyces
           clavuligerus ATCC 27064]
 gi|326444277|ref|ZP_08219011.1| pyrroloquinoline quinone biosynthesis protein PqqE [Streptomyces
           clavuligerus ATCC 27064]
 gi|294328537|gb|EFG10180.1| pyrroloquinoline quinone biosynthesis protein PqqE [Streptomyces
           clavuligerus ATCC 27064]
          Length = 433

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 16/72 (22%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GC L           +C +C      I   +      +  +D+  +    G  +     L
Sbjct: 86  GCPL-----------RCAYCSNPVELIG--RSDELTAEHWSDIFRQAADLGVVQTH---L 129

Query: 91  TGGEPLLQVDVP 102
           +GGEPLL+ D+P
Sbjct: 130 SGGEPLLRRDLP 141


>gi|262275115|ref|ZP_06052926.1| coenzyme PQQ synthesis protein E [Grimontia hollisae CIP 101886]
 gi|262221678|gb|EEY72992.1| coenzyme PQQ synthesis protein E [Grimontia hollisae CIP 101886]
          Length = 376

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R    C +C        G      + ++   ++EE    G  +  +   +
Sbjct: 12  PLWLLAELTYRCPLHCAYC--ANPLNLGDPDDELSTEEWCRVLEEGRELGAVQLGF---S 66

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETN 119
           GGEPL++ D+  L+   N  G+   + T+
Sbjct: 67  GGEPLMRRDLEQLVAHANALGYYTNLITS 95


>gi|257468717|ref|ZP_05632811.1| molybdenum cofactor biosynthesis protein A [Fusobacterium ulcerans
           ATCC 49185]
          Length = 324

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 22/167 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D+ + +C +C  +       K      +++  +       G K+ +   +TGGEPL++ +
Sbjct: 18  DKCNLKCIYCMPEESVESIEKDELLTFEEIERICIAAAEIGIKKIK---ITGGEPLIRKE 74

Query: 101 VP-LIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVSPKAGCDLKIKGGQE-- 148
           V  L++ +   +G E + + TNG +           GID I +S      LK K   E  
Sbjct: 75  VAGLVKKIKLIKGIENVTLTTNGILLEKNIEELAQAGIDGINIS---LDSLKEKKYHEIT 131

Query: 149 ----LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191
               LK V   +       I        ++ ++   + E   LA  Y
Sbjct: 132 RCGYLKDVLSGIESVVNKKIKLKLNCVIIKNINEDEIIEIAGLAQKY 178


>gi|162146545|ref|YP_001601004.1| putative Fe-S oxidoreductase [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209543456|ref|YP_002275685.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785120|emb|CAP54665.1| putative Fe-S oxidoreductase [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209531133|gb|ACI51070.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 392

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 8/83 (9%)

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           R +V +  D   E             + GGEPLL  ++P +++ L  R   + + TN  +
Sbjct: 58  RMSVQECLDADTEAG------APVIAIAGGEPLLHKEMPDIVRGLIARKKYVYLCTN-AL 110

Query: 123 EPPQGIDWICVSPKAGCDLKIKG 145
              + +D    SP    D+ + G
Sbjct: 111 LLEKKMDDYEPSPFFSWDVHLDG 133


>gi|77459610|ref|YP_349117.1| molybdenum cofactor biosynthesis protein A [Pseudomonas fluorescens
           Pf0-1]
 gi|123744689|sp|Q3KAS8|MOAA_PSEPF RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|77383613|gb|ABA75126.1| putative molybdenum cofactor biosynthesis protein A [Pseudomonas
           fluorescens Pf0-1]
          Length = 332

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 13/87 (14%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+  Q        ++++  L +     G ++ R   LTGGEPL+
Sbjct: 23  DRCDFRCVYCMAEDMQFLPRQ----RVLTLEEIYQLAQSFVALGTRKIR---LTGGEPLI 75

Query: 98  QVDVP-LIQALNKR-GF-EIAVETNGT 121
           +  V  L + +    G  E+ + TNG+
Sbjct: 76  RPGVVGLCKQIAALPGLRELCLTTNGS 102


>gi|78223860|ref|YP_385607.1| radical SAM family protein [Geobacter metallireducens GS-15]
 gi|78195115|gb|ABB32882.1| Radical SAM [Geobacter metallireducens GS-15]
          Length = 383

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 13/98 (13%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL--ADLIEEQWITGEKEGRYCV 89
           C +W        +  C  C        G+  G    D+L   + +       E       
Sbjct: 9   CAVWEFTLAC--NLNCIHC--------GSSAGSRRTDELTTDEAVALCHDLKEAGCLGVA 58

Query: 90  LTGGEPLLQVDVPLIQAL-NKRGFEIAVETNGTIEPPQ 126
           L GGEPLL+ D   I  L  K G E++V TNGTI  P+
Sbjct: 59  LMGGEPLLRKDFWQIAGLIRKLGMELSVITNGTIHDPE 96


>gi|330507417|ref|YP_004383845.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6]
 gi|328928225|gb|AEB68027.1| radical SAM domain protein [Methanosaeta concilii GP-6]
          Length = 348

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 42  RLSAQCRFCDT--DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           R    C +C    D  G          V +LAD++ E    G        +TGGEPLL++
Sbjct: 36  RCERGCFYCPISEDRRGKDVAYADEQPVGELADILSEGRAIGALGTG---ITGGEPLLRL 92

Query: 100 DVPL--IQALNKR 110
           D  L  I+AL + 
Sbjct: 93  DYVLDCIRALKEE 105


>gi|310827022|ref|YP_003959379.1| molybdenum cofactor biosynthesis protein A [Eubacterium limosum
           KIST612]
 gi|308738756|gb|ADO36416.1| molybdenum cofactor biosynthesis protein A [Eubacterium limosum
           KIST612]
          Length = 318

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 14/104 (13%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY----NVDQLADLIEEQWITGEKEGRYC 88
           N       D  + +C +C    +  +G    R+    + +++  L+      G  + R  
Sbjct: 10  NYLRISITDLCNLRCVYC----MPEEGVPKRRHATNLSFEEIEALVRAGADMGIDKIR-- 63

Query: 89  VLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNGTIEPPQGID 129
            LTGGEPL++   + L++ L    G    A+ TNG + P    D
Sbjct: 64  -LTGGEPLVRAGVLDLVKKLGAIPGIRDFAMTTNGILLPEMAAD 106


>gi|317152988|ref|YP_004121036.1| Radical SAM domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943239|gb|ADU62290.1| Radical SAM domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 315

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 9/98 (9%)

Query: 33  NLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   +     S  CR+C   +      +    + ++  +L+ E    G       +L 
Sbjct: 11  PLWVQADITTSCSLSCRYC---YASHWKEE-RHIDTERFLELLAEMDEMGVF---LLLLA 63

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGI 128
           GGEPL   D   +++A  +    ++V TNGT  P   +
Sbjct: 64  GGEPLRHPDFFRILEAAIQTRMSVSVLTNGTESPELAV 101


>gi|239584285|gb|ACR82899.1| AmgF [Streptomyces sp. KCTC 9047]
          Length = 310

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 43/126 (34%), Gaps = 13/126 (10%)

Query: 84  EGRYCVLTGGEPLLQ-VDVPLIQALNKRGF--EIAVETNGTIEPP------QGIDWICVS 134
             R+  + GGEPLL    VP++  + + G    + V TNG + P         +D + VS
Sbjct: 60  RARFVKVLGGEPLLHKQLVPILDIIRESGIAPRVLVCTNGVLLPRMRDDFWSRVDEVEVS 119

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD-GPFLEENTNLAISYCF 193
              G +L      EL  V  Q            +  F     + G           + C 
Sbjct: 120 IYPGREL---SDDELAHVRRQAERHQTTLTVSYYSHFRYSYSEVGTEDARLVEQIFTTCQ 176

Query: 194 QNPKWR 199
               WR
Sbjct: 177 VAHVWR 182


>gi|262201214|ref|YP_003272422.1| molybdenum cofactor biosynthesis protein A [Gordonia bronchialis
           DSM 43247]
 gi|262084561|gb|ACY20529.1| molybdenum cofactor biosynthesis protein A [Gordonia bronchialis
           DSM 43247]
          Length = 365

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 22/109 (20%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA--DLIEEQWITGEKE--GRYCVLTGGEPL 96
           DR + +C +C      +        +  +L   D +        ++        TGGEPL
Sbjct: 48  DRCNLRCTYC------MPAEGLDWMDSAELLSTDELVRVLTVAVRDLGVHRIRFTGGEPL 101

Query: 97  LQVDVPLI----QALNKRGFEIAVETNG---TIE----PPQGIDWICVS 134
           L+ D+  I     AL +R  E+A+ TNG   T         G+D I VS
Sbjct: 102 LRRDLEEIIARMAALPQRP-ELAMTTNGLGLTRRARGLVDAGLDRINVS 149


>gi|159041556|ref|YP_001540808.1| radical SAM domain-containing protein [Caldivirga maquilingensis
           IC-167]
 gi|157920391|gb|ABW01818.1| Radical SAM domain protein [Caldivirga maquilingensis IC-167]
          Length = 371

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 18/81 (22%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            VF  F+GCN            +C +C    +  +   G      +LA +   Q    E 
Sbjct: 153 TVF--FTGCNF-----------RCVYCQNWDISQRPENGVEVTPGELAAI---QAKLRED 196

Query: 84  EGRYCVLTGGEPLLQVDVPLI 104
             R     GGEP     +P I
Sbjct: 197 GARNINWVGGEPT--PSIPFI 215


>gi|147921657|ref|YP_684524.1| hypothetical protein LRC197 [uncultured methanogenic archaeon RC-I]
 gi|110619920|emb|CAJ35198.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 372

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 80  TGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTI 122
             +   R  +  GGEPLL+    + L+  L  R F +   TNGT+
Sbjct: 54  IAQDPDRTVIFYGGEPLLELPKMLELMDELPARRFLLH--TNGTM 96


>gi|325262367|ref|ZP_08129104.1| putative pyruvate formate-lyase 1 activating enzyme [Clostridium
           sp. D5]
 gi|324032199|gb|EGB93477.1| putative pyruvate formate-lyase 1 activating enzyme [Clostridium
           sp. D5]
          Length = 314

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
           G  Y VD+L   I +     E  G     +GGE L+Q      + +   +    +A+ET 
Sbjct: 106 GQDYTVDELFRRIYQDRFYFEHSGGGVTFSGGETLMQPRFLHAIAKKCREYHINVAIETC 165

Query: 120 G 120
           G
Sbjct: 166 G 166


>gi|323699436|ref|ZP_08111348.1| Radical SAM domain protein [Desulfovibrio sp. ND132]
 gi|323459368|gb|EGB15233.1| Radical SAM domain protein [Desulfovibrio desulfuricans ND132]
          Length = 370

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 7/88 (7%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN        + + +C +C   +     T       + L     + ++ G        LT
Sbjct: 5   CNTLIWNMTRKCNFRCEYC---YFPHDNTP----VTETLDARRIKAFLDGTGRTWKVGLT 57

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETN 119
           GGEP +   +  I A       I ++TN
Sbjct: 58  GGEPFIYPGINDICATLTETHVIGIDTN 85


>gi|313890891|ref|ZP_07824515.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120789|gb|EFR43904.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 263

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 66/183 (36%), Gaps = 46/183 (25%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +C++C   DT  +    
Sbjct: 16  TESFGSVDGPG---------IRFIIFMQGC-----------KMRCQYCHNPDTWEMETNN 55

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQAL----NKRGFE 113
           +K        + D+++E        G+     ++GGE +LQ+D   I AL     K G  
Sbjct: 56  SKER-----TVNDVLKEALNYKHFWGKTGGITVSGGEAMLQID--FITALFIQAKKHGVH 108

Query: 114 IAVETNG-TIEPPQGI-----DWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD 167
             ++T G T              + V+     D+K    ++ K+V  Q N +   +  + 
Sbjct: 109 TTLDTCGFTYRATPEYHAKLEKLLAVTDLVLLDIKEIDAEQHKIVTKQSNKNILLFAQYL 168

Query: 168 FER 170
            ++
Sbjct: 169 SDK 171


>gi|308187773|ref|YP_003931904.1| UPF0063 protein yfgB [Pantoea vagans C9-1]
 gi|308058283|gb|ADO10455.1| UPF0063 protein yfgB [Pantoea vagans C9-1]
          Length = 389

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    ITG++     V+ G
Sbjct: 123 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKITGQRPITNVVMMG 182

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 183 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 233


>gi|304438304|ref|ZP_07398245.1| pyruvate formate-lyase activating enzyme [Selenomonas sp. oral
          taxon 149 str. 67H29BP]
 gi|304368670|gb|EFM22354.1| pyruvate formate-lyase activating enzyme [Selenomonas sp. oral
          taxon 149 str. 67H29BP]
          Length = 175

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 28/87 (32%)

Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLA 71
          GEG    R+ VF    GC             +C  C   DT     Q T GGR     + 
Sbjct: 24 GEGI---RLTVF--TQGCP-----------RRCPGCHNPDT-----QPTDGGRVT--TVG 60

Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           ++++        G    L+GGEP LQ
Sbjct: 61 AVLQDLDANPLLTG--LTLSGGEPFLQ 85


>gi|304398588|ref|ZP_07380460.1| radical SAM enzyme, Cfr family [Pantoea sp. aB]
 gi|304353799|gb|EFM18174.1| radical SAM enzyme, Cfr family [Pantoea sp. aB]
          Length = 389

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    ITG++     V+ G
Sbjct: 123 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKITGQRPITNVVMMG 182

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 183 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 233


>gi|315656996|ref|ZP_07909881.1| molybdopterin cofactor biosynthesis protein A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492388|gb|EFU81994.1| molybdopterin cofactor biosynthesis protein A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 362

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 63/185 (34%), Gaps = 39/185 (21%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY----CVLTGGEPL 96
           DR   +C +C      +           +L D  E   + G    R       LTGGEPL
Sbjct: 42  DRCDLRCSYC------LPRGGVKWVPRRELLDASEILRLAGIAIHRLGITQVRLTGGEPL 95

Query: 97  LQVDVPLIQALNKRGF-------EIAVETN--------------GTIEPPQGIDWICVSP 135
           L+ D+  I A  +  F       ++A+ TN              G       +D   + P
Sbjct: 96  LRPDLLEIAAGVRESFVSAGLDPQLALTTNARSLAPLAAALRATGIRRINISLD--TLDP 153

Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
                +   G  EL      ++ +     GF   + +   +D   L E   L + +C + 
Sbjct: 154 NRFAQIA--GRDELAKALAGIDAA--LSAGFQTVKMNTVMLDRVSLREAPEL-LRFCLER 208

Query: 196 P-KWR 199
             +WR
Sbjct: 209 GIEWR 213


>gi|311277353|ref|YP_003939584.1| Radical SAM domain-containing protein [Enterobacter cloacae SCF1]
 gi|308746548|gb|ADO46300.1| Radical SAM domain protein [Enterobacter cloacae SCF1]
          Length = 374

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           +GC++ +     R + +CR+C      +   +    +   L   I +Q      E     
Sbjct: 2   TGCHVMAKPAGSRCNLRCRYC----FYLDKPQYAMMDDATLTLFIRQQIAAQPGEDVQFA 57

Query: 90  LTGGEPLL------QVDVPLIQALNKRGFEIA--VETNG 120
             GGEP L         V L Q     G  I   ++TNG
Sbjct: 58  WQGGEPTLCGLDFFHRVVEL-QQQYGHGKRIHNALQTNG 95


>gi|294495004|ref|YP_003541497.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanohalophilus mahii DSM 5219]
 gi|292666003|gb|ADE35852.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanohalophilus mahii DSM 5219]
          Length = 272

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
           +C +C  ++  + G         Q+  L+E    T        V++GGEPL Q      +
Sbjct: 41  RCPYC-QNYSILNG--YELVESSQIRQLME----TSRPFVSSVVISGGEPLQQEKAVSGI 93

Query: 104 IQALNKRGFEIAVETNGTI 122
            Q     G  + + TNG  
Sbjct: 94  AQMARDMGLLVGIHTNGVH 112


>gi|261345336|ref|ZP_05972980.1| radical SAM enzyme, Cfr family [Providencia rustigianii DSM 4541]
 gi|282566377|gb|EFB71912.1| radical SAM enzyme, Cfr family [Providencia rustigianii DSM 4541]
          Length = 393

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I     TG +     V+ G
Sbjct: 127 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGRRPITNVVMMG 186

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 187 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDV 237


>gi|229817484|ref|ZP_04447766.1| hypothetical protein BIFANG_02747 [Bifidobacterium angulatum DSM
           20098]
 gi|229785273|gb|EEP21387.1| hypothetical protein BIFANG_02747 [Bifidobacterium angulatum DSM
           20098]
          Length = 280

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 26/106 (24%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           R+ VF   SGC L           +C++C   DT     +   G    ++ +   I+   
Sbjct: 58  RMTVFM--SGCPL-----------RCQYCQNPDT----WKMRDGKPVYLEAMIKKIDRYA 100

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFEIAVETNG 120
              +  G     +GGE ++Q     +  +     + G    ++T+G
Sbjct: 101 DLFKATGGGITFSGGESMMQP--AFVSRVFHAAKQMGVHTCLDTSG 144


>gi|196230119|ref|ZP_03128982.1| coenzyme PQQ biosynthesis protein E [Chthoniobacter flavus
           Ellin428]
 gi|196225716|gb|EDY20223.1| coenzyme PQQ biosynthesis protein E [Chthoniobacter flavus
           Ellin428]
          Length = 334

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R    C +C ++     G  G      +   +I+E    G  +  +   +GGEPLL+ D+
Sbjct: 15  RCPLHCPYC-SNPAMYPG--GNELTTSEWQRVIDEAAALGVLQAGF---SGGEPLLRPDL 68

Query: 102 P-LIQALNKRGFEIAVETN 119
             LI    + G    + T+
Sbjct: 69  AQLIAHARQAGLYTNLITS 87


>gi|15679080|ref|NP_276197.1| pyruvate formate lyase activating protein [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622167|gb|AAB85558.1| pyruvate formate lyase activating protein [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 332

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 16/73 (21%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F  FSGC           + +C FC    +    + G    VD+LA LIEE+   G  
Sbjct: 122 TIF--FSGC-----------TLRCVFCQNWDISQNPSAGRHIEVDELAALIEERRRMGAA 168

Query: 84  EGRYCVLTGGEPL 96
              +    GG+P 
Sbjct: 169 NVNFV---GGDPT 178


>gi|150388865|ref|YP_001318914.1| radical SAM domain-containing protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149948727|gb|ABR47255.1| Radical SAM domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 513

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 18/91 (19%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCN+           +C+ C +     +    G  N D+   L +E    G    ++  L
Sbjct: 15  GCNM-----------RCKHCGS---SCEHPLEGELNTDEALKLCDEMGELG---FQWITL 57

Query: 91  TGGEPLLQVDVPLI-QALNKRGFEIAVETNG 120
           +GGEP  + D  LI + LN  G    + TNG
Sbjct: 58  SGGEPTTRKDWHLIAKRLNDNGIIPNMITNG 88


>gi|223986899|ref|ZP_03636876.1| hypothetical protein HOLDEFILI_04199 [Holdemania filiformis DSM
           12042]
 gi|223961155|gb|EEF65690.1| hypothetical protein HOLDEFILI_04199 [Holdemania filiformis DSM
           12042]
          Length = 168

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 25/108 (23%)

Query: 10  FLTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68
           F ++  GE    G  AV     GC              C  C           G     +
Sbjct: 12  FDSIVDGE----GLRAV-VWTQGCP-----------HGCPGCHNPQT-HAFDGGTSVASE 54

Query: 69  QLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEI 114
            + + ++  +            +GGEP+ Q      L  A+++ G  +
Sbjct: 55  SILEQLKAHFYLDG-----VTFSGGEPMAQAAACGELAWAVHQLGMNV 97


>gi|182412196|ref|YP_001817262.1| radical SAM protein [Opitutus terrae PB90-1]
 gi|205829633|sp|B1ZQZ5|RLMN1_OPITP RecName: Full=Ribosomal RNA large subunit methyltransferase N 1;
           AltName: Full=23S rRNA m2A2503 methyltransferase 1
 gi|177839410|gb|ACB73662.1| radical SAM enzyme, Cfr family [Opitutus terrae PB90-1]
          Length = 355

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 62/179 (34%), Gaps = 30/179 (16%)

Query: 28  RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
           R +GC       Q   +  C FC T   G +        V+Q   L  E    G K  + 
Sbjct: 102 RAAGC----LSSQVGCAMGCDFCATAQSGFERNLTAGEMVEQFLALRREAASAGRK-LQT 156

Query: 88  CVLTG-GEPLLQVDVPL--IQALNKRGF------EIAVETNGTIEPPQGIDWICVSPKAG 138
            V  G GEPLL +D  L  ++ +    +      ++ V T G +    GID +       
Sbjct: 157 VVFMGMGEPLLNLDAVLTAVRRIADNTYGGLGWRQVTVSTVGLVP---GIDALT-----A 208

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS----LQPMDGPFLEENTNLAISYCF 193
            DL I     L +     + +    +     RF+    L  +D         + I YC 
Sbjct: 209 ADLGIN----LAVSLHAPDDATRAALLPAGRRFAIADILAAVDRFQASRGRPVIIQYCL 263


>gi|168179650|ref|ZP_02614314.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum
           NCTC 2916]
 gi|168184928|ref|ZP_02619592.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum
           Bf]
 gi|237795372|ref|YP_002862924.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum
           Ba4 str. 657]
 gi|259495862|sp|C3KXJ8|MOAA_CLOB6 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|182669280|gb|EDT81256.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum
           NCTC 2916]
 gi|182672020|gb|EDT83981.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum
           Bf]
 gi|229263442|gb|ACQ54475.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum
           Ba4 str. 657]
          Length = 319

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +C +C      I+         +++  +++   + G  + R+   TG
Sbjct: 10  NYLRVSVTDRCNLRCVYCMPPEGIIKKEHDNIMRYEEIFKVVKSASLLGVNKIRF---TG 66

Query: 93  GEPLLQVDV 101
           GEPL+  ++
Sbjct: 67  GEPLILKNI 75


>gi|220926899|ref|YP_002502201.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Methylobacterium nodulans ORS 2060]
 gi|219951506|gb|ACL61898.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Methylobacterium nodulans ORS 2060]
          Length = 384

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 20/119 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C                R  VD+  + + E            V+ 
Sbjct: 38  CNLAC--------AGCG----KIDYPDEILNKRLPVDEALESVRECG------APVVVIA 79

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
           GGEPLL  D+P +++ +  +     V TN  +   + I     SP     + + G +E+
Sbjct: 80  GGEPLLHKDLPQIVEGIIAQKKFAIVCTN-ALLLEKKISQYKPSPYFTWSIHLDGDKEM 137


>gi|154244917|ref|YP_001415875.1| radical SAM domain-containing protein [Xanthobacter autotrophicus
           Py2]
 gi|154159002|gb|ABS66218.1| Radical SAM domain protein [Xanthobacter autotrophicus Py2]
          Length = 355

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 30/130 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C       +       + +    ++++       +   CVL 
Sbjct: 42  CNLL-----------CTTC--PRTYEELEPPADMSWELFTSIVDQI-----PDLERCVLH 83

Query: 92  G-GEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
           G GEP+L  ++  +++ L  RG  +   TNGT+          ++ K G  +   G  EL
Sbjct: 84  GIGEPMLVPNLDRMVRYLKDRGTYVLFNTNGTV----------LNEKNGRAMIEAGLDEL 133

Query: 150 KLVFPQVNVS 159
           ++     N +
Sbjct: 134 RVSLDASNAA 143


>gi|331004874|ref|ZP_08328291.1| Molybdenum cofactor biosynthesis protein A [gamma proteobacterium
           IMCC1989]
 gi|330421328|gb|EGG95577.1| Molybdenum cofactor biosynthesis protein A [gamma proteobacterium
           IMCC1989]
          Length = 327

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 25/109 (22%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           GR   + R S          DR   +C +C   D  F+     +    ++++LA + ++ 
Sbjct: 8   GRPITYLRLS--------VTDRCDFRCVYCMAEDMQFL----PRKDILSLEELAIIAQQF 55

Query: 78  WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE-----TNGT 121
              G    R   +TGGEPL++  +   Q  +  G    +E     TNG+
Sbjct: 56  VELGITAIR---ITGGEPLIRRGID--QLFSTLGQLPELEELTLTTNGS 99


>gi|323507587|emb|CBQ67458.1| related to Molybdopterin biosynthesis CNX2 protein [Sporisorium
           reilianum]
          Length = 874

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 33/101 (32%)

Query: 32  CNLWSGREQDRLSAQCRFC---D----TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           CNL           +C +C   D    T    +  T      V++LA L   Q +   + 
Sbjct: 112 CNL-----------RCLYCMPEDGVPLTPSANLLSTS----EVERLAALFVSQGVNKIR- 155

Query: 85  GRYCVLTGGEPLLQVDVPLIQA----LNKRGFE-IAVETNG 120
                LTGGEP ++ D+P I A    L + G E I + TNG
Sbjct: 156 -----LTGGEPTVRSDLPQIVASLNSLKQHGLEQIGITTNG 191


>gi|320449552|ref|YP_004201648.1| molybdenum cofactor biosynthesis protein A [Thermus scotoductus
           SA-01]
 gi|320149721|gb|ADW21099.1| molybdenum cofactor biosynthesis protein A [Thermus scotoductus
           SA-01]
          Length = 325

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 18/103 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C            G   V+++   +E   + G    R+   T
Sbjct: 22  CNL-----------HCLYC-HPLGLEMAEPPGTLTVEEVDYFLEAASLLGLSAVRF---T 66

Query: 92  GGEPLLQVDVPLI--QALNKRGFE-IAVETNGTIEPPQGIDWI 131
           GGEPL++ ++P +  +A +K G E +A+ TNG +   +  + +
Sbjct: 67  GGEPLVRKELPQMIERARSKEGIEDVAITTNGLLFAKRAKELV 109


>gi|288799992|ref|ZP_06405451.1| probable arylsulfatase-activating protein AslB [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288333240|gb|EFC71719.1| probable arylsulfatase-activating protein AslB [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 409

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 26/103 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQ---GTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           CNL            C++C   ++  Q    +    +  + L +   +Q++  + + +  
Sbjct: 22  CNL-----------SCKYC--YYLEKQFLYASNKSMWMDETLLERFIQQYLLSQTQPQ-V 67

Query: 89  VLT--GGEPLLQVDVPLIQALN-----KRGFEIA--VETNGTI 122
             T  GGEPLL+      +AL       +G++I   ++TNGT+
Sbjct: 68  SFTWHGGEPLLRPISFYEKALKLQQKYGKGYDIQNSLQTNGTL 110


>gi|229059842|ref|ZP_04197218.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH603]
 gi|228719512|gb|EEL71114.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH603]
          Length = 306

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 53  DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-R 110
           D+  +Q         D++  L       G  + R   LTGGEPLL+ D+P LI  L K  
Sbjct: 9   DYAFLQEEF--LLTFDEIERLARLFISMGVNKIR---LTGGEPLLRKDLPKLIARLAKLE 63

Query: 111 GFE-IAVETNG 120
           G   I + TNG
Sbjct: 64  GLTDIGLTTNG 74


>gi|94969793|ref|YP_591841.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551843|gb|ABF41767.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 340

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 20/90 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C++C                ++ +   I+     G        ++
Sbjct: 46  CNL-----------SCKYC-----NEYDKVSKPVPLETIKRRIDLLAKLGTN---IVTIS 86

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           GGEPLL  D+  +I+ + K      + TNG
Sbjct: 87  GGEPLLHPDLDEIIRHMRKHPIIAGMITNG 116


>gi|61888840|ref|NP_001013615.1| molybdenum cofactor biosynthesis protein 1 isoform b [Bos taurus]
 gi|61553596|gb|AAX46428.1| molybdenum cofactor synthesis-step 1 protein isoform 1 [Bos taurus]
          Length = 382

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +       K      +++  L       G  + R   LT
Sbjct: 77  CNL-----------RCQYCMPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 122

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GGEPL++ D V ++  L +  G   I + TNG
Sbjct: 123 GGEPLIRPDVVDIVAQLRQLEGLRTIGITTNG 154


>gi|116751423|ref|YP_848110.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116700487|gb|ABK19675.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 362

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 14/89 (15%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL                     G   T G      ++ DL+ +     E    Y +L+
Sbjct: 39  CNLNCIHCYLG----------PHDGDHETLGPEAGAARIRDLLRQ---AAEAGCLYVLLS 85

Query: 92  GGEPLLQVDVPLI-QALNKRGFEIAVETN 119
           GGEPLL+ D   I +     G  + V TN
Sbjct: 86  GGEPLLRPDFESIYRYARSLGLIVTVFTN 114


>gi|317486219|ref|ZP_07945053.1| molybdenum cofactor biosynthesis protein A [Bilophila wadsworthia
           3_1_6]
 gi|316922518|gb|EFV43770.1| molybdenum cofactor biosynthesis protein A [Bilophila wadsworthia
           3_1_6]
          Length = 347

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 25/104 (24%)

Query: 27  CRFS---GCNLWSGREQDRLSAQCRFCDT-DFVGIQGTKGGRYN-VDQLADLIEEQWITG 81
            R S    CNL           +C +C +     I      RY  ++QL D+  +  +  
Sbjct: 28  IRLSVTDRCNL-----------RCTYCRSGMETFIPHESVLRYEEMEQLVDMAMDMGVEK 76

Query: 82  EKEGRYCVLTGGEPLLQVDVP-LIQALNKRG--FEIAVETNGTI 122
                   LTGGEP  +      ++ L       +I V TNGT+
Sbjct: 77  ------VRLTGGEPFARKGFADFLERLRAAHPALDIRVTTNGTL 114


>gi|302518288|ref|ZP_07270630.1| molybdenum cofactor biosynthesis protein A [Streptomyces sp. SPB78]
 gi|318057729|ref|ZP_07976452.1| molybdenum cofactor biosynthesis protein A [Streptomyces sp.
           SA3_actG]
 gi|318078320|ref|ZP_07985652.1| molybdenum cofactor biosynthesis protein A [Streptomyces sp.
           SA3_actF]
 gi|302427183|gb|EFK98998.1| molybdenum cofactor biosynthesis protein A [Streptomyces sp. SPB78]
          Length = 329

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 12/104 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99
           DR + +C +C  +       K      +++  L+                TGGEPLL+  
Sbjct: 19  DRCNLRCTYCMPEEGLQWLGKPELLTDEEIVRLVR--LAVTRLGITDVRFTGGEPLLRRG 76

Query: 100 DVPLIQ--ALNKRGFEIAVETNG-------TIEPPQGIDWICVS 134
            V L++  AL     ++++ TNG       T     G+D + VS
Sbjct: 77  LVDLVRRCALLDPRPKLSLTTNGIGLARTATALAEAGLDRVNVS 120


>gi|302530570|ref|ZP_07282912.1| molybdenum cofactor biosynthesis protein A [Streptomyces sp. AA4]
 gi|302439465|gb|EFL11281.1| molybdenum cofactor biosynthesis protein A [Streptomyces sp. AA4]
          Length = 354

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 22/109 (20%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRY-CVLTGGEPL 96
           DR + +C +C      +          +Q+    +L+    I  E  G     LTGGEPL
Sbjct: 45  DRCNLRCTYC------MPAEGLDWMPSEQVLSDDELVRLMRIAVEMLGVTDIRLTGGEPL 98

Query: 97  LQVDVPL----IQALNKRGFEIAVETNG---TIEPP----QGIDWICVS 134
           L+  +      I AL  R   +++ TNG       P     G+D I VS
Sbjct: 99  LRPGLEHIVERITALEPRP-RVSMTTNGIGLAKRAPGLVAAGLDRINVS 146


>gi|269928766|ref|YP_003321087.1| Radical SAM domain-containing protein [Sphaerobacter thermophilus
           DSM 20745]
 gi|269788123|gb|ACZ40265.1| Radical SAM domain protein [Sphaerobacter thermophilus DSM 20745]
          Length = 364

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 18/101 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +                     ++   LI+E     E +  Y  + 
Sbjct: 24  CNLQCVHCLSSSGRR--------------APDELTTEEAKRLIDEW---AEMKVFYINVG 66

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           GGEP+ + D   L++    R   +   TNGT+      DWI
Sbjct: 67  GGEPMTRPDFFELMEYAISRRIGVKFSTNGTLIDDAAADWI 107


>gi|126726927|ref|ZP_01742766.1| radical SAM domain protein [Rhodobacterales bacterium HTCC2150]
 gi|126703885|gb|EBA02979.1| radical SAM domain protein [Rhodobacterales bacterium HTCC2150]
          Length = 329

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119
             D+++D + +         R    TGGEP +  + + + +     G+E+ + TN
Sbjct: 78  TADEVSDYLTQLKDQNW-GVREIAFTGGEPFMNPEMIEITRRSLAAGYEVLILTN 131


>gi|88811940|ref|ZP_01127193.1| coproporphyrinogen III oxidase [Nitrococcus mobilis Nb-231]
 gi|88790824|gb|EAR21938.1| coproporphyrinogen III oxidase [Nitrococcus mobilis Nb-231]
          Length = 369

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
           C +CD +   ++G       VD  LAD++ E     E+E       GG P L     L +
Sbjct: 4   CPYCDFNSHALRGELPATAYVDALLADVLREIKHIHEREISSVFFGGGTPSLFPPAALAR 63

Query: 106 ALN--------KRGFEIAVETN-GTIE 123
            L             EI +E N G+++
Sbjct: 64  LLEGLQRYLRIAADCEITLEANPGSVD 90


>gi|330685605|gb|EGG97251.1| YfkB-like domain protein [Staphylococcus epidermidis VCU121]
          Length = 380

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 12/91 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D +   ++E         R   +TGGEP+         
Sbjct: 44  RCSHCAVGYT-LQTKDPEPLPMDIIYRRLDEI-----PNLRTLSITGGEPMFSKKSIKNV 97

Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
             PL++  ++RG  + + +N T+   + +D 
Sbjct: 98  VKPLLKYAHQRGIYVQMNSNLTLPQDRYLDI 128


>gi|269797703|ref|YP_003311603.1| radical SAM protein [Veillonella parvula DSM 2008]
 gi|282848976|ref|ZP_06258365.1| radical SAM domain protein [Veillonella parvula ATCC 17745]
 gi|269094332|gb|ACZ24323.1| Radical SAM domain protein [Veillonella parvula DSM 2008]
 gi|282581251|gb|EFB86645.1| radical SAM domain protein [Veillonella parvula ATCC 17745]
          Length = 469

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 26/112 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ--LADLIEEQWITGEKEGRYCV 89
           CNL            C++C   F       G +  +    +A    +  I      ++C 
Sbjct: 107 CNL-----------ACKYC---FASQGDYGGVKRELMSFDVAKRAVDFLIKMSGPRQHCE 152

Query: 90  LT--GGEPLLQVD--------VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           +   GGEPLL  D        +  IQ  + + F++ + TNG +     ID++
Sbjct: 153 IDFFGGEPLLNWDVVKQTVEYIESIQEKHNKIFKLTLTTNGMLLTQDKIDYV 204


>gi|206890569|ref|YP_002248014.1| coenzyme PQQ synthesis protein, putative [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742507|gb|ACI21564.1| coenzyme PQQ synthesis protein, putative [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 302

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 12/116 (10%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R +  C FC       QG     +  +++   I    I  E +     + GGEP L   +
Sbjct: 12  RCNKSCAFC-----FSQGLFYHDFPEERIGRFIA---ILRENKINSLDILGGEPFLYKSL 63

Query: 102 -PLIQALNKRGFEIAVETNGTIEPPQGIDWICV---SPKAGCDLKIKGGQELKLVF 153
             L++   ++  E+ + TNGT               S K G  +     ++L  + 
Sbjct: 64  NKLVKKAIEKDIEVTISTNGTFINELKNFLKTFDKGSVKVGVSINESPAEDLLQII 119


>gi|206901313|ref|YP_002251416.1| heme biosynthesis protein, putative [Dictyoglomus thermophilum
           H-6-12]
 gi|206740416|gb|ACI19474.1| heme biosynthesis protein, putative [Dictyoglomus thermophilum
           H-6-12]
          Length = 326

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 21/103 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG---RYC 88
           CNL           +CR C          +      ++L  +IE+     +KEG      
Sbjct: 15  CNL-----------RCRHC----YQENFDRSRELPFEKLVHIIEDIATFLKKEGFDRLSV 59

Query: 89  VLTGGEPLLQVDV-PLIQALNKRG--FEIAVETNGTIEPPQGI 128
            LTGGEPL+   +  +++ LNK     EI + TNG + P + I
Sbjct: 60  NLTGGEPLIYPHLNQILKTLNKVDIVHEINIITNGILSPNKVI 102


>gi|158455134|gb|AAI26848.1| Molybdenum cofactor synthesis 1 [Bos taurus]
 gi|296474490|gb|DAA16605.1| molybdenum cofactor biosynthesis protein 1 isoform b [Bos taurus]
          Length = 382

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +       K      +++  L       G  + R   LT
Sbjct: 77  CNL-----------RCQYCMPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIR---LT 122

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GGEPL++ D V ++  L +  G   I + TNG
Sbjct: 123 GGEPLIRPDVVDIVAQLRQLEGLRTIGITTNG 154


>gi|39936796|ref|NP_949072.1| radical SAM family protein [Rhodopseudomonas palustris CGA009]
 gi|192292622|ref|YP_001993227.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Rhodopseudomonas palustris TIE-1]
 gi|39650653|emb|CAE29176.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
 gi|192286371|gb|ACF02752.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Rhodopseudomonas palustris TIE-1]
          Length = 386

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C                R    +  D  EE             + 
Sbjct: 38  CNLAC--------AGCG----KIDYPDAILNRRMTAQECWDAAEECG------APMVAIP 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+  ++  +++ L  R   +++ TN  +   + +     SP     + + G +E
Sbjct: 80  GGEPLIHKEIGEIVRGLVARKKFVSLCTN-ALLLEKKLHLFEPSPYLFFSVHLDGLKE 136


>gi|212638175|ref|YP_002314695.1| Radical SAM superfamily enzyme [Anoxybacillus flavithermus WK1]
 gi|212559655|gb|ACJ32710.1| Radical SAM superfamily enzyme [Anoxybacillus flavithermus WK1]
          Length = 376

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 83  KEGRYCVLTGGEPLL------QVDVPLIQALNKRGFEIAVETNGTIEP 124
              R   +TGGEP+L      Q  VPL++  ++RG    + +N T++ 
Sbjct: 77  PHLRSLSITGGEPMLSMKSVEQYVVPLLKYAHERGVRTQINSNLTLDL 124


>gi|294793467|ref|ZP_06758604.1| radical SAM domain protein [Veillonella sp. 3_1_44]
 gi|294455037|gb|EFG23409.1| radical SAM domain protein [Veillonella sp. 3_1_44]
          Length = 463

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 26/112 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ--LADLIEEQWITGEKEGRYCV 89
           CNL            C++C   F       G +  +    +A    +  I      ++C 
Sbjct: 101 CNL-----------ACKYC---FASQGDYGGVKRELMSFDVAKRAVDFLIKMSGPRQHCE 146

Query: 90  LT--GGEPLLQVD--------VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           +   GGEPLL  D        +  IQ  + + F++ + TNG +     ID++
Sbjct: 147 IDFFGGEPLLNWDVVKQTVEYIESIQEKHNKIFKLTLTTNGMLLTQDKIDYV 198


>gi|11499842|ref|NP_071086.1| tRNA-modifying enzyme [Archaeoglobus fulgidus DSM 4304]
 gi|2648255|gb|AAB88988.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 298

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 93  GEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
           GEP L   +P LI+   KRGF   + TNGT  
Sbjct: 127 GEPTLYPMLPELIEEYKKRGFTTFLVTNGTNP 158


>gi|15807624|ref|NP_293989.1| molybdenum cofactor biosynthesis protein A [Deinococcus radiodurans
           R1]
          Length = 247

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 25/112 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  +   +    + +++  L       G ++ R   +TG
Sbjct: 19  DRCNLRCTYCMPAEVFGPD--YAFL--PRAELLSFEEIERLARVFVGLGAEKLR---ITG 71

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVS 134
           GEP L+ D+P L+  L    G + +A+ TNG + P    D        + +S
Sbjct: 72  GEPTLRRDLPELLARLAAFPGVQDLAMTTNGLLLPRLAADLKAAGLQRVTIS 123


>gi|134300005|ref|YP_001113501.1| radical SAM domain-containing protein [Desulfotomaculum reducens
           MI-1]
 gi|134052705|gb|ABO50676.1| Radical SAM domain protein [Desulfotomaculum reducens MI-1]
          Length = 330

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 24/99 (24%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ---LADLIEEQWITGEKEGRYC 88
           CNL+           C + D    G++       + D+   L D I E         +  
Sbjct: 11  CNLYC--------EHC-YRD---AGVKAE--EELSTDEGKRLLDQIAEVG------FKIM 50

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           + +GGEPL++ D+  L+     +G      TNGT+  P+
Sbjct: 51  IFSGGEPLMRPDIYELVAHARSKGLRPVFGTNGTLITPE 89


>gi|115523832|ref|YP_780743.1| radical SAM domain-containing protein [Rhodopseudomonas palustris
           BisA53]
 gi|115517779|gb|ABJ05763.1| Radical SAM domain protein [Rhodopseudomonas palustris BisA53]
          Length = 382

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 22/119 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R    +  D  EE             +
Sbjct: 38  CNL-----------ACVGCGKIDY--PDAILDRRMTAQECWDAAEECG------APMVAI 78

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
            GGEPL+  ++  +++ L +R   +++ TN  +   + +     SP     + + G +E
Sbjct: 79  PGGEPLIHREIGEIVRGLVERKKFVSLCTN-ALLLEKKLHLFEPSPYLFFSVHLDGLKE 136


>gi|268325092|emb|CBH38680.1| conserved hypothetical protein, wyosine base formation and radical
           SAM family [uncultured archaeon]
          Length = 319

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP 124
           GEP L   +  LIQ  +  G    V TNGT   
Sbjct: 138 GEPTLYPHLQELIQEFHSHGMTTFVVTNGTNPA 170


>gi|302558328|ref|ZP_07310670.1| molybdenum cofactor biosynthesis protein A [Streptomyces
           griseoflavus Tu4000]
 gi|302475946|gb|EFL39039.1| molybdenum cofactor biosynthesis protein A [Streptomyces
           griseoflavus Tu4000]
          Length = 342

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 17/91 (18%)

Query: 45  AQCRFC----D-----TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
             C FC    D     T        + G         ++ +    G K       TGGEP
Sbjct: 39  EACWFCHNEGDVPPPHTQLHRKDRPRPGELTAADYLTVLRDVITAGLKR---VYFTGGEP 95

Query: 96  LLQVD-VPLIQALNKRGF---EIAVETNGTI 122
           LL     P++  L   G       + TNG++
Sbjct: 96  LLSPLARPVLTELPDAGADGSYTLI-TNGSL 125


>gi|56419305|ref|YP_146623.1| molybdopterin cofactor biosynthesis protein [Geobacillus
           kaustophilus HTA426]
 gi|56379147|dbj|BAD75055.1| molybdopterin cofactor biosynthesis protein [Geobacillus
           kaustophilus HTA426]
          Length = 341

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 13/102 (12%)

Query: 28  RFSGCNLWSGREQ--DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           R +   L   R    D+ + +C +C      + G        DQL   +EE  +  E   
Sbjct: 12  RLAR-PLRDLRLSVIDQCNFRCVYC--MPAEVFGPNFRFLAEDQLL-TVEEMALLAECFV 67

Query: 86  RYCV----LTGGEPLLQVDV-PLIQALNK-RGFE-IAVETNG 120
              V    LTGGEPLL+ D+  LI+ L+   G   +A+ TNG
Sbjct: 68  ELGVEKIRLTGGEPLLRRDLDALIERLSMIPGLRDVALTTNG 109


>gi|302872841|ref|YP_003841477.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302575700|gb|ADL43491.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 194

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 28/97 (28%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +     TL G G   G         GC           S +C+ C +     +  K  
Sbjct: 11  YPV----YTL-GPGKRVGIW-----LQGC-----------SIRCKGCMSVHTW-EFDKSK 48

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
              ++++AD+++          +   ++GGEP  Q +
Sbjct: 49  AIKIEEVADILKSFG------CKRLTISGGEPFDQNE 79


>gi|292493485|ref|YP_003528924.1| coenzyme PQQ biosynthesis protein E [Nitrosococcus halophilus Nc4]
 gi|291582080|gb|ADE16537.1| coenzyme PQQ biosynthesis protein E [Nitrosococcus halophilus Nc4]
          Length = 383

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 28  RFSGCNLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           R     LW   E       QC +C                 +    +  E    G  +  
Sbjct: 18  RTQ--PLWLLAELSYACPLQCPYCSNPLDFADHRH--ELTTEDWLRVFREARAMGATQLG 73

Query: 87  YCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETN 119
           +   +GGEPLL+ D+  LI    K G+   + T+
Sbjct: 74  F---SGGEPLLRRDLEVLIAEARKLGYYTNLITS 104


>gi|283853203|ref|ZP_06370455.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
 gi|283571376|gb|EFC19384.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
          Length = 350

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR        +    G  ++  +   LI+    TG       + T
Sbjct: 15  CNLAC--------KHCR----AEACLDPWPGE-FDTTEAKALIDTFPETG---SPIIIFT 58

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D+  L++    +     +  NGT+
Sbjct: 59  GGEPLLRPDIFELVRHAGSKDLRCVMAPNGTL 90


>gi|254294676|ref|YP_003060699.1| glycosyl transferase family 2 [Hirschia baltica ATCC 49814]
 gi|254043207|gb|ACT60002.1| glycosyl transferase family 2 [Hirschia baltica ATCC 49814]
          Length = 748

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 19/96 (19%)

Query: 30  SGCNLWSGREQDRLSA-------------QCRFC-DTDFVGIQGTKGGRYNVDQLADLIE 75
           SGC     R     +              +C +C  T + G + +       + LA+L+E
Sbjct: 400 SGCPYIDRRTPKPDTISYISLENFSYCNMRCTYCSPTYYGGQEASYS---TPNILANLLE 456

Query: 76  EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111
           +          + V  GGEP L  +   + AL    
Sbjct: 457 QSDNLSSNC--HVVWGGGEPTLSPNFKPVNALLSAN 490


>gi|163869037|ref|YP_001610268.1| hypothetical protein Btr_2240 [Bartonella tribocorum CIP 105476]
 gi|161018715|emb|CAK02273.1| hypothetical protein BT_2240 [Bartonella tribocorum CIP 105476]
          Length = 270

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 90  LTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           L+GGEPL+   +  ++  LN+ G  + + TNG
Sbjct: 2   LSGGEPLMHPKLKDILLTLNELGLPVELNTNG 33


>gi|155241764|gb|ABT18046.1| heme d1 biosynthesis protein [Heliobacillus mobilis]
          Length = 331

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 49  FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL 107
           FCD  +           +  +   L++E    G    +  + +GGEPL++ D+  L+   
Sbjct: 14  FCDHCYRDAGAKAEQELSTVEGKQLLDEIAKAG---FKIMIFSGGEPLMRPDIVELVAYA 70

Query: 108 NKRGFEIAVETNGTI 122
             +G      TNGT+
Sbjct: 71  TSKGLRSVFGTNGTL 85


>gi|77166081|ref|YP_344606.1| pyrroloquinoline quinone biosynthesis protein PqqE [Nitrosococcus
           oceani ATCC 19707]
 gi|254435298|ref|ZP_05048805.1| coenzyme PQQ biosynthesis protein E [Nitrosococcus oceani AFC27]
 gi|76884395|gb|ABA59076.1| Coenzyme PQQ biosynthesis protein E [Nitrosococcus oceani ATCC
           19707]
 gi|207088409|gb|EDZ65681.1| coenzyme PQQ biosynthesis protein E [Nitrosococcus oceani AFC27]
          Length = 385

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 17/106 (16%)

Query: 19  HAGRVAVFCRFSGCNLWSGREQDRL-SAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIE 75
             G      R     LW   E       QC +C    DF   +       +      +  
Sbjct: 11  FTGNA----RTQ--PLWLLAELTYACPLQCPYCSNPLDFANYKHE----LSTKDWLRVFH 60

Query: 76  EQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           E    G  +  +   +GGEPL + D+  LI    K G+   + T+G
Sbjct: 61  EARAMGAAQLGF---SGGEPLARRDLEVLITEARKLGYYTNLITSG 103


>gi|87119391|ref|ZP_01075289.1| hypothetical protein MED121_14015 [Marinomonas sp. MED121]
 gi|86165782|gb|EAQ67049.1| hypothetical protein MED121_14015 [Marinomonas sp. MED121]
          Length = 465

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 15/78 (19%)

Query: 46  QCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-- 102
            CRFC  +F   +  +G  + + D++A+  EE W+ G  E     + GG   L  D+   
Sbjct: 143 GCRFC--NFAKSKEEEGAEFLSFDEIANRAEEAWLKGATE---VCIQGG---LHPDIDKD 194

Query: 103 ----LIQALNKRGFEIAV 116
               L+ A+  R  +I +
Sbjct: 195 YYKNLVLAVKARVPDIHI 212


>gi|325264091|ref|ZP_08130823.1| putative pyruvate formate-lyase 1 activating enzyme [Clostridium
           sp. D5]
 gi|324030575|gb|EGB91858.1| putative pyruvate formate-lyase 1 activating enzyme [Clostridium
           sp. D5]
          Length = 315

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 88  CVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
             ++GGEP+LQ       ++AL  +G + A++T+G
Sbjct: 129 VTVSGGEPVLQHKFLYEFLEALKMQGVDTALDTSG 163


>gi|254425895|ref|ZP_05039612.1| hypothetical protein S7335_463 [Synechococcus sp. PCC 7335]
 gi|196188318|gb|EDX83283.1| hypothetical protein S7335_463 [Synechococcus sp. PCC 7335]
          Length = 228

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 20/96 (20%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           GR AV     GC             +C  C                +  + +L++  W+ 
Sbjct: 57  GRRAV-VWLQGC-----------LRECPSC----FNPASWSFEENQILSIDELVK--WVL 98

Query: 81  GEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
            E E      +GGEP  Q      + + L   G  +
Sbjct: 99  DEPENEGITFSGGEPFWQATALAAVSRQLKAHGLNV 134


>gi|304389698|ref|ZP_07371657.1| molybdenum cofactor biosynthesis protein A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304326874|gb|EFL94113.1| molybdenum cofactor biosynthesis protein A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 362

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 63/185 (34%), Gaps = 39/185 (21%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY----CVLTGGEPL 96
           DR   +C +C      +           +L D  E   + G    R       LTGGEPL
Sbjct: 42  DRCDLRCSYC------LPRGGVKWVPRRELLDASEILRLAGIAIHRLGITQVRLTGGEPL 95

Query: 97  LQVDVPLIQALNKRGF-------EIAVETN--------------GTIEPPQGIDWICVSP 135
           L+ D+  I A  +  F       ++A+ TN              G       +D   + P
Sbjct: 96  LRPDLLEIAAGVRESFVSAGLDPQLALTTNARSLAPLAAALRATGIRRINISLD--TLDP 153

Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
                +   G  EL      ++ +     GF   + +   +D   L E   L + +C + 
Sbjct: 154 NRFAQIA--GRDELAKALAGIDAA--LSAGFQTVKMNTVMLDRVSLREAPEL-LRFCLER 208

Query: 196 P-KWR 199
             +WR
Sbjct: 209 GIEWR 213


>gi|227487962|ref|ZP_03918278.1| molybdenum cofactor biosynthesis protein A [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092053|gb|EEI27365.1| molybdenum cofactor biosynthesis protein A [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 335

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 67/183 (36%), Gaps = 29/183 (15%)

Query: 41  DRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
           DR + +C +C      +++    T      +  +   +E+  I           TGGEPL
Sbjct: 24  DRCNLRCTYCMPAEGLEWIPTPDTLTDEETIRLIRIAVEQLGIQQ------VRFTGGEPL 77

Query: 97  LQVDVP----LIQALNKRGFEIAVETNGT-------IEPPQGIDWICVS-PKAGCD--LK 142
           L+  +P      +AL       A+ TNG        +    G+D + +S      D   +
Sbjct: 78  LRKSLPEIITATKALTPSP-STAITTNGVSLHRHARVLKDAGLDRVNISLDSLDNDTYTR 136

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN-PKWRLS 201
           +     L  V   + V+ E  IG    + +   M G    +   LA  +C Q+  + R  
Sbjct: 137 LTRRDRLDDVLTSIRVASE--IGLTPVKVNTVVMPGVNEGDIVPLA-EFCLQHGAQLRFI 193

Query: 202 VQT 204
            Q 
Sbjct: 194 EQM 196


>gi|158521238|ref|YP_001529108.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158510064|gb|ABW67031.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 395

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            +       R + +C  C   +       +    + D+   LI++     + +    + +
Sbjct: 40  PVVVWNITKRCNLKCVHC---YAHATPQAQDNELSTDEGKALIDDL---ADFKAPVLLFS 93

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
           GGEPL++ D+P L     K+G    + TNGT+
Sbjct: 94  GGEPLMRKDLPELAGYAVKKGMRAVISTNGTL 125


>gi|291618414|ref|YP_003521156.1| YfgB [Pantoea ananatis LMG 20103]
 gi|291153444|gb|ADD78028.1| YfgB [Pantoea ananatis LMG 20103]
 gi|327394806|dbj|BAK12228.1| radical SAM Cfr family YfgB [Pantoea ananatis AJ13355]
          Length = 389

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 123 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 182

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 183 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 233


>gi|269468265|gb|EEZ79949.1| coproporphyrinogen III oxidase [uncultured SUP05 cluster bacterium]
          Length = 397

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 34/101 (33%), Gaps = 11/101 (10%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            L           +C +CD  F   +G     Y    L DL ++      +      + G
Sbjct: 28  PLSLYIHYPWCVKKCPYCD--FNSHEGEDRNGYIEALLKDLDKDLKYVQGRSIHSIFIGG 85

Query: 93  GEPLL---QVDVPLIQALN-----KRGFEIAVETN-GTIEP 124
           G P L        L   L      ++  EI +ETN GT E 
Sbjct: 86  GTPSLMSADELHELFTGLKSKLTFEKNIEITLETNPGTFEV 126


>gi|239940746|ref|ZP_04692683.1| radical SAM domain-containing protein [Streptomyces roseosporus
           NRRL 15998]
 gi|239987224|ref|ZP_04707888.1| radical SAM domain-containing protein [Streptomyces roseosporus
           NRRL 11379]
 gi|291444185|ref|ZP_06583575.1| radical SAM domain-containing protein [Streptomyces roseosporus
           NRRL 15998]
 gi|291347132|gb|EFE74036.1| radical SAM domain-containing protein [Streptomyces roseosporus
           NRRL 15998]
          Length = 374

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 22/100 (22%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCV 89
           GCN             C+ C   ++G +   G G  +  +L D++ E  +   +      
Sbjct: 90  GCNF-----------GCKHC---YLGERPFSGLGWEDKVRLLDIMREAGVLWLQ------ 129

Query: 90  LTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGI 128
           +TGGEP +  D     +   + G  + + TNG++     +
Sbjct: 130 ITGGEPTMDPDFQGAYRYAWQAGMMLTISTNGSLLWRPDL 169


>gi|218706020|ref|YP_002413539.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           UMN026]
 gi|293405958|ref|ZP_06649950.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412]
 gi|298381759|ref|ZP_06991358.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           FVEC1302]
 gi|300898379|ref|ZP_07116722.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1]
 gi|254807179|sp|B7N6A5|RLMN_ECOLU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|218433117|emb|CAR14014.1| putative Fe-S containing enzyme [Escherichia coli UMN026]
 gi|291428166|gb|EFF01193.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412]
 gi|298279201|gb|EFI20715.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           FVEC1302]
 gi|300357919|gb|EFJ73789.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1]
          Length = 384

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 177

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 228


>gi|22537545|ref|NP_688396.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
           2603V/R]
 gi|22534427|gb|AAN00269.1|AE014256_1 pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
           2603V/R]
          Length = 262

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 40/127 (31%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +C++C   DT  +    
Sbjct: 16  TESFGSVDGPG---------IRFIIFMQGC-----------KMRCQYCHNPDTWEMETNN 55

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQAL----NKRGFE 113
           +K        + D+++E        G+     ++GGE +LQ+D   I AL     K G  
Sbjct: 56  SKER-----TVEDVLKEALRYKHFWGKDGGITVSGGEAMLQID--FITALFIEAKKLGIH 108

Query: 114 IAVETNG 120
             ++T G
Sbjct: 109 TTLDTCG 115


>gi|297526807|ref|YP_003668831.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255723|gb|ADI31932.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 316

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 12/96 (12%)

Query: 90  LTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI-------EPPQGIDWICV---SPKAG 138
           LTGGEPL++ D+  ++  +   G  +++ TNG+           + +D I V   S K  
Sbjct: 67  LTGGEPLIRDDIVDIVHEIRSVGGVVSITTNGSRLAEFAEKLAEEKVDHINVSLHSLKPD 126

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
              K   G +L+ V   +  + E  +    +   L 
Sbjct: 127 V-FKTITGGDLERVLAGIFKALEYGLKLKIDYVILS 161


>gi|297584282|ref|YP_003700062.1| pyruvate formate-lyase activating enzyme [Bacillus selenitireducens
           MLS10]
 gi|297142739|gb|ADH99496.1| pyruvate formate-lyase activating enzyme [Bacillus selenitireducens
           MLS10]
          Length = 249

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 22/101 (21%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F    GC             +C++C   D+         G   +V +L + I++     
Sbjct: 23  IF--TQGC-----------LLRCQYCHNPDS----WDREAGTDMSVQELIEDIKKYIPYM 65

Query: 82  EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
              G    ++GGEPLLQV     L   L   G   A++++G
Sbjct: 66  NASGGGVTVSGGEPLLQVPFLTALFTELKSLGVHTAIDSSG 106


>gi|15889001|ref|NP_354682.1| molybdenum cofactor biosynthesis protein A [Agrobacterium
           tumefaciens str. C58]
 gi|24211986|sp|Q8UER0|MOAA_AGRT5 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|15156789|gb|AAK87467.1| molybdenum cofactor biosynthesis protein A [Agrobacterium
           tumefaciens str. C58]
          Length = 349

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 9/83 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C ++ +     K     +++L  L       G ++ R   LTGGEPL++ +
Sbjct: 38  DRCDFRCTYCMSEHMTFL-PKKDLLTLEELDRLCSVFITRGVRKLR---LTGGEPLVRKN 93

Query: 101 VPLIQALNKRGFEIAVETNGTIE 123
           +  +  +   G  +    +GT++
Sbjct: 94  I--MSLVRNLGRHVQ---SGTLD 111


>gi|319761727|ref|YP_004125664.1| oxygen-independent coproporphyrinogen iii oxidase [Alicycliphilus
           denitrificans BC]
 gi|317116288|gb|ADU98776.1| oxygen-independent coproporphyrinogen III oxidase [Alicycliphilus
           denitrificans BC]
          Length = 411

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 34/106 (32%), Gaps = 17/106 (16%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKG------GRYNVDQLADLIEEQWITGEKEGR 86
            L           +C +CD  F   Q   G       RY    +ADL     +   +   
Sbjct: 34  PLSLYVHLPWCLRKCPYCD--FNSHQAPGGSEALPEARYTAALVADLEAALPLVWGRTVH 91

Query: 87  YCVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIE 123
              + GG P L     + + L           G E+ +E N GT E
Sbjct: 92  SIFIGGGTPSLFSPEAMDRLLGDIRARLPLDAGCEVTLEANPGTFE 137


>gi|210620896|ref|ZP_03292313.1| hypothetical protein CLOHIR_00256 [Clostridium hiranonis DSM 13275]
 gi|210155108|gb|EEA86114.1| hypothetical protein CLOHIR_00256 [Clostridium hiranonis DSM 13275]
          Length = 434

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 20/104 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR C T+    +       +V  + D + E            ++T
Sbjct: 113 CNL-----------ACRHCCTNCNSTEKDILTTEDVKSIMDFVAELEPYEF------IIT 155

Query: 92  GGEPLLQVDVPL-IQALNKRGFEIA--VETNGTIEPPQGIDWIC 132
           GGEP+++ D    +    ++  +    + TN T+     +D+I 
Sbjct: 156 GGEPMIRSDFEECVHYFKEKDCKTELVLSTNATLIDESNVDFIV 199


>gi|116073729|ref|ZP_01470991.1| hypothetical protein RS9916_34802 [Synechococcus sp. RS9916]
 gi|116069034|gb|EAU74786.1| hypothetical protein RS9916_34802 [Synechococcus sp. RS9916]
          Length = 346

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 9/77 (11%)

Query: 28  RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
           R + C       Q      CRFC       +G         ++ D +       ++   +
Sbjct: 101 RLTVC----VSSQVGCPMACRFC----ATGKGGLQRSLATHEIVDQVLSIREVMDRRPSH 152

Query: 88  CVLTG-GEPLLQVDVPL 103
            V  G GEPLL +D  L
Sbjct: 153 VVFMGMGEPLLNIDAVL 169


>gi|293609283|ref|ZP_06691585.1| molybdopterin biosynthesis protein [Acinetobacter sp. SH024]
 gi|292827735|gb|EFF86098.1| molybdopterin biosynthesis protein [Acinetobacter sp. SH024]
          Length = 346

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 16/106 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C    +        + ++     LI+      ++      +TGGEPL++  
Sbjct: 33  DRCNFKCVYC----MPEHPEWLNKQDLLSFEALIQFCSFMVQQGIESIRITGGEPLMRQG 88

Query: 101 VPL----IQALNKRGF-EIAVETNGTIEP-------PQGIDWICVS 134
           +      +QAL   G   I++ TNG             G+D + +S
Sbjct: 89  IVHFVRDLQALKALGLKRISMTTNGHYLAKYAQQLKDAGLDDLNIS 134


>gi|269468050|gb|EEZ79768.1| coproporphyrinogen III oxidase [uncultured SUP05 cluster bacterium]
          Length = 368

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 34/101 (33%), Gaps = 11/101 (10%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            L           +C +CD  F   +G     Y    L DL ++      +      + G
Sbjct: 6   PLSLYIHYPWCVKKCPYCD--FNSHEGEDRNGYIEALLKDLDKDLKYVQGRSIHSIFIGG 63

Query: 93  GEPLL---QVDVPLIQALN-----KRGFEIAVETN-GTIEP 124
           G P L        L   L      ++  EI +ETN GT E 
Sbjct: 64  GTPSLMSADELHELFTGLKSKLTFEKNIEITLETNPGTFEV 104


>gi|238019572|ref|ZP_04599998.1| hypothetical protein VEIDISOL_01441 [Veillonella dispar ATCC 17748]
 gi|237864271|gb|EEP65561.1| hypothetical protein VEIDISOL_01441 [Veillonella dispar ATCC 17748]
          Length = 491

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 26/112 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ--LADLIEEQWITGEKEGRYCV 89
           CNL            C++C   F       G +  +    +A    +  I      ++C 
Sbjct: 129 CNL-----------ACKYC---FASQGDYGGVKRELMSFDVAKRAVDFLIKMSGPRQHCE 174

Query: 90  LT--GGEPLLQVD--------VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           +   GGEPLL  D        +  IQ  + + F++ + TNG +     ID++
Sbjct: 175 IDFFGGEPLLNWDVVKQTVEYIESIQEKHNKIFKLTLTTNGMLLTQDKIDYV 226


>gi|90423385|ref|YP_531755.1| molybdenum cofactor synthesis-like [Rhodopseudomonas palustris
           BisB18]
 gi|90105399|gb|ABD87436.1| molybdenum cofactor synthesis-like [Rhodopseudomonas palustris
           BisB18]
          Length = 354

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 15/86 (17%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR + +C +C   D  F+     K     ++++  L       G ++ R   LTGGEPL+
Sbjct: 48  DRCNLRCHYCMAEDMTFL----PKAEVLTLEEIDRLCASFIALGTRKLR---LTGGEPLV 100

Query: 98  QVDVPLIQALNKRGFEIAVETNGTIE 123
           +  V  +  +   G  +    +G ++
Sbjct: 101 RSGV--MDLVRALGRHLQ---SGALD 121


>gi|315650867|ref|ZP_07903913.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315486894|gb|EFU77230.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 354

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 30/118 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C FC   +    G         D L  +++      E E +Y   
Sbjct: 18  CNL-----------RCNFC---YAKSAGYAHNDMIKYDDLKSIVD---FCCEAEVKYIFF 60

Query: 91  TGGEPLLQV-DVPLIQALNKRGFEI--AVETNGTI---------EPPQGIDWICVSPK 136
           TGGEPL     V +++ +  +  +I  AV TNG +             GI +I +S K
Sbjct: 61  TGGEPLTYPYLVDILKYIKSKSHKILTAVATNGILLKNIGLCRDLIESGIGYIDISMK 118


>gi|260886564|ref|ZP_05897827.1| radical SAM domain protein [Selenomonas sputigena ATCC 35185]
 gi|330839603|ref|YP_004414183.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185]
 gi|260863707|gb|EEX78207.1| radical SAM domain protein [Selenomonas sputigena ATCC 35185]
 gi|329747367|gb|AEC00724.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185]
          Length = 330

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQ 105
           C+ C   +           +  +   L++E    G    +  + +GGEPL + D + L++
Sbjct: 15  CKHC---YRDAGCKAEEELSTAEAKKLLDEIARAG---FKIMIFSGGEPLTRPDILELVE 68

Query: 106 ALNKRGFEIAVETNGTIEPPQ 126
              K G      TNGT+  P+
Sbjct: 69  HATKLGLRSVFGTNGTLITPE 89


>gi|226227341|ref|YP_002761447.1| hypothetical protein GAU_1935 [Gemmatimonas aurantiaca T-27]
 gi|226090532|dbj|BAH38977.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 335

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 9/69 (13%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L +     R +A+C FCD  +     ++   + +   AD+                 TGG
Sbjct: 29  LLNFEVTMRCNARCGFCD--YWKTPASEKA-HELKSFADI------ARHFSPMLVTFTGG 79

Query: 94  EPLLQVDVP 102
           EP L+ D+ 
Sbjct: 80  EPTLRRDLE 88


>gi|322831763|ref|YP_004211790.1| radical SAM enzyme, Cfr family [Rahnella sp. Y9602]
 gi|321166964|gb|ADW72663.1| radical SAM enzyme, Cfr family [Rahnella sp. Y9602]
          Length = 399

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C FC T   G          + Q+   A +I    + G +     V+ G
Sbjct: 132 CVSSQVGCALECTFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVAGTRPITNVVMMG 191

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 192 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 242


>gi|284165005|ref|YP_003403284.1| radical SAM protein [Haloterrigena turkmenica DSM 5511]
 gi|284014660|gb|ADB60611.1| Radical SAM domain protein [Haloterrigena turkmenica DSM 5511]
          Length = 405

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL+           C  C   + G         ++  +    +E      +      + 
Sbjct: 49  CNLY-----------CSHC---YAGADLKAAPSEFSTREAKTFLE---GVADFGAPVILF 91

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           +GGEPL++ D+  L+      G    + +NGT+
Sbjct: 92  SGGEPLVRDDLTELVDYAADLGLRPVLSSNGTL 124


>gi|226939443|ref|YP_002794516.1| MoaA1 [Laribacter hongkongensis HLHK9]
 gi|226714369|gb|ACO73507.1| MoaA1 [Laribacter hongkongensis HLHK9]
          Length = 324

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 45/119 (37%), Gaps = 23/119 (19%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
            R S          DR   +C +C    F G +         D+   L+      G +  
Sbjct: 13  VRLS--------VTDRCDLRCSYCLPKGFKGFE-EPAHWLTFDETERLMRVFVALGTRRV 63

Query: 86  RYCVLTGGEPLLQVDV-PLIQALNKR-GF-EIAVETNGTIEP-------PQGIDWICVS 134
           R   LTGGEPLL+  V  L   L +  G  ++++ TN T            G+D I VS
Sbjct: 64  R---LTGGEPLLRRGVAELASRLKRIDGLADLSLSTNATQLARHAVALKAAGVDRINVS 119


>gi|154503634|ref|ZP_02040694.1| hypothetical protein RUMGNA_01458 [Ruminococcus gnavus ATCC 29149]
 gi|260589858|ref|ZP_05855771.1| putative radical SAM domain protein [Blautia hansenii DSM 20583]
 gi|153795734|gb|EDN78154.1| hypothetical protein RUMGNA_01458 [Ruminococcus gnavus ATCC 29149]
 gi|260539665|gb|EEX20234.1| putative radical SAM domain protein [Blautia hansenii DSM 20583]
          Length = 463

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 29/132 (21%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVD---QLADLIEEQWITGEKEG 85
             CNL           +C++C   + G    +  G    +   +  D I E    GEKE 
Sbjct: 112 QECNL-----------RCKYC---YAGDGEYSNPGIMKYEIGKKAIDFIAEFC--GEKEQ 155

Query: 86  RYCVLTGGEPLLQ--VDVPLIQA----LNKRGFEI--AVETNGTIEPPQGIDWICVSPKA 137
              +  GGEPL+       L++        +G  +  A+ TNGT+   + I+   +  + 
Sbjct: 156 FNIIFFGGEPLMDFRKLKKLVEYAEYVAKNKGKTVGFAITTNGTL-LTEEIEHFLIEKRF 214

Query: 138 GCDLKIKGGQEL 149
              L + GG+E+
Sbjct: 215 NITLSLDGGEEV 226


>gi|119504325|ref|ZP_01626405.1| pyrroloquinoline quinone biosynthesis protein PqqE [marine gamma
           proteobacterium HTCC2080]
 gi|119459833|gb|EAW40928.1| pyrroloquinoline quinone biosynthesis protein PqqE [marine gamma
           proteobacterium HTCC2080]
          Length = 375

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E   R   QC +C         + G   + +    ++++    G  +  +   +
Sbjct: 10  PLWLLAELTYRCPLQCPYCSNPVEL--ASAGTELSTEDWFRVLQQARKMGAAQLGF---S 64

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGEPL+ Q    L+    + GF   + T+G
Sbjct: 65  GGEPLVRQDLELLVAEARRLGFYSNLITSG 94


>gi|167040005|ref|YP_001662990.1| radical SAM domain-containing protein [Thermoanaerobacter sp. X514]
 gi|300914096|ref|ZP_07131412.1| Radical SAM domain protein [Thermoanaerobacter sp. X561]
 gi|307724670|ref|YP_003904421.1| Radical SAM domain-containing protein [Thermoanaerobacter sp. X513]
 gi|166854245|gb|ABY92654.1| Radical SAM domain protein [Thermoanaerobacter sp. X514]
 gi|300889031|gb|EFK84177.1| Radical SAM domain protein [Thermoanaerobacter sp. X561]
 gi|307581731|gb|ADN55130.1| Radical SAM domain protein [Thermoanaerobacter sp. X513]
          Length = 460

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 15/67 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C++C   +        G     +++A+ + +       + +  V 
Sbjct: 92  CNL-----------KCKYC---YANHGDYNQGQAIMTEEIAEKVADFIKLNFPKVKVIVF 137

Query: 91  TGGEPLL 97
            GGEPLL
Sbjct: 138 FGGEPLL 144


>gi|167037358|ref|YP_001664936.1| radical SAM domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115773|ref|YP_004185932.1| Radical SAM domain-containing protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166856192|gb|ABY94600.1| Radical SAM domain protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319928864|gb|ADV79549.1| Radical SAM domain protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 460

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 15/67 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C++C   +        G     +++A+ + +       + +  V 
Sbjct: 92  CNL-----------KCKYC---YANHGDYNQGQAIMTEEIAEKVADFIKLNFPKVKVIVF 137

Query: 91  TGGEPLL 97
            GGEPLL
Sbjct: 138 FGGEPLL 144


>gi|25011510|ref|NP_735905.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
           NEM316]
 gi|76797662|ref|ZP_00779931.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
           18RS21]
 gi|24413049|emb|CAD47127.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586956|gb|EAO63445.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
           18RS21]
 gi|319745350|gb|EFV97664.1| pyruvate formate-lyase activating enzyme [Streptococcus agalactiae
           ATCC 13813]
          Length = 262

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 40/127 (31%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +C++C   DT  +    
Sbjct: 16  TESFGSVDGPG---------IRFIIFMQGC-----------KMRCQYCHNPDTWEMETNN 55

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQAL----NKRGFE 113
           +K        + D+++E        G+     ++GGE +LQ+D   I AL     K G  
Sbjct: 56  SKER-----TVEDVLKEALRYKHFWGKDGGITVSGGEAMLQID--FITALFIEAKKLGIH 108

Query: 114 IAVETNG 120
             ++T G
Sbjct: 109 TTLDTCG 115


>gi|124028060|ref|YP_001013380.1| molybdenum cofactor biosynthesis protein [Hyperthermus butylicus
           DSM 5456]
 gi|123978754|gb|ABM81035.1| Molybdenum cofactor biosynthesis enzyme [Hyperthermus butylicus DSM
           5456]
          Length = 347

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VD 100
           R +  C FC  +            +++++  L +     G +  +   +TGGEP ++   
Sbjct: 5   RCNFACFFCHMEGYKQGYRVEDEVSLEEIELLAKAAKRIGIEAFK---ITGGEPTVRSDL 61

Query: 101 VPLIQALNKRGFEIAVETNGTI 122
           V +++ L+  GF +++ TN ++
Sbjct: 62  VDIVKILHSYGFYVSMTTNASL 83


>gi|53804937|ref|YP_113380.1| hypothetical protein MCA0891 [Methylococcus capsulatus str. Bath]
 gi|53758698|gb|AAU92989.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
          Length = 344

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 20/87 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           C L  G      S                  G+  ++Q+++ ++               T
Sbjct: 15  CPLTCGHCITESSPH--------------VKGKMQIEQVSEYLKVIPPFASG----VCFT 56

Query: 92  GGEPLL--QVDVPLIQALNKRGFEIAV 116
           GGEP L  Q  + L+      G + ++
Sbjct: 57  GGEPFLYYQDILELVLQAKDLGLKTSL 83


>gi|315230541|ref|YP_004070977.1| hypothetical protein TERMP_00777 [Thermococcus barophilus MP]
 gi|315183569|gb|ADT83754.1| hypothetical protein TERMP_00777 [Thermococcus barophilus MP]
          Length = 348

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 19/81 (23%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F  FSGCN            +C FC  ++   Q   G RY+ + +A  I   +  G K
Sbjct: 134 TIF--FSGCNF-----------RCVFC-QNWDISQYRVGLRYSPEDMATKIAVAYAEGAK 179

Query: 84  EGRYCVLTGGEPLLQVDVPLI 104
              +    GGEP    ++P I
Sbjct: 180 NVNFV---GGEPT--PNLPFI 195


>gi|307945307|ref|ZP_07660643.1| molybdenum cofactor biosynthesis protein A [Roseibium sp.
           TrichSKD4]
 gi|307771180|gb|EFO30405.1| molybdenum cofactor biosynthesis protein A [Roseibium sp.
           TrichSKD4]
          Length = 391

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 20/92 (21%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+     K    ++++L  L       G ++ R   LTGGEPL+
Sbjct: 80  DRCDFRCVYCMAEDMTFL----PKREVLSLEELDRLCTAFIEKGVRKLR---LTGGEPLV 132

Query: 98  QVDVPLIQALNKRGFEI---AVE-----TNGT 121
           + ++  +  +   G  I   A+E     TNG+
Sbjct: 133 RKNI--MSLIRSLGRHIDSGALEELTVTTNGS 162


>gi|307692334|ref|ZP_07634571.1| radical SAM family protein [Ruminococcaceae bacterium D16]
          Length = 471

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 29/113 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRY-- 87
           CNL           +C++C   F        GR   + +     I+  W+  +   R   
Sbjct: 107 CNL-----------RCKYC---FASTGDFGTGRKIMDFETAKRAID--WVVAKSGKRRNI 150

Query: 88  -CVLTGGEPLLQVDVP--------LIQALNKRGFEIAVETNGTIEPPQGIDWI 131
                GGEPL+ +D           ++  + + F   + TNG +   + I++I
Sbjct: 151 EVDFFGGEPLMAMDTVKKTVEYARSLEKEHDKVFRFTITTNGVLLNDENIEYI 203


>gi|256790251|ref|ZP_05528682.1| pyruvate formate-lyase activating enzyme [Streptomyces lividans
           TK24]
 gi|289774124|ref|ZP_06533502.1| pyruvate-formate lyase activating enzyme [Streptomyces lividans
           TK24]
 gi|289704323|gb|EFD71752.1| pyruvate-formate lyase activating enzyme [Streptomyces lividans
           TK24]
          Length = 170

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 8/56 (14%)

Query: 89  VLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWICVSPK 136
            LTGGEPLLQ      +++   +     A++T+G      + E     D + +  K
Sbjct: 2   TLTGGEPLLQPAFTAAVLRRCKEAALHTALDTSGFLGARASDELLADTDLVLLDVK 57


>gi|76787669|ref|YP_330039.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
           A909]
 gi|76562726|gb|ABA45310.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
           A909]
          Length = 262

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 40/127 (31%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +C++C   DT  +    
Sbjct: 16  TESFGSVDGPG---------IRFIIFMQGC-----------KMRCQYCHNPDTWEMETNN 55

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQAL----NKRGFE 113
           +K        + D+++E        G+     ++GGE +LQ+D   I AL     K G  
Sbjct: 56  SKER-----TVEDVLKEALRYKHFWGKDGGITVSGGEAMLQID--FITALFIEAKKLGIH 108

Query: 114 IAVETNG 120
             ++T G
Sbjct: 109 TTLDTCG 115


>gi|77405768|ref|ZP_00782853.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
           H36B]
 gi|77175625|gb|EAO78409.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
           H36B]
          Length = 262

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 40/127 (31%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +C++C   DT  +    
Sbjct: 16  TESFGSVDGPG---------IRFIIFMQGC-----------KMRCQYCHNPDTWEMETNN 55

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQAL----NKRGFE 113
           +K        + D+++E        G+     ++GGE +LQ+D   I AL     K G  
Sbjct: 56  SKER-----TVEDVLKEALRYKHFWGKDGGITVSGGEAMLQID--FITALFIEAKKLGIH 108

Query: 114 IAVETNG 120
             ++T G
Sbjct: 109 TTLDTCG 115


>gi|324326187|gb|ADY21447.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 337

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 14/89 (15%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C        D+  +Q       + D++  L       G ++ R   LTGGE
Sbjct: 22  DRCNFRCTYCMPAEVFGADYAFLQEEF--LLSFDEIERLARLFIGMGVEKIR---LTGGE 76

Query: 95  PLLQVDVP-LIQAL-NKRGFE-IAVETNG 120
           PLL+ D+  LI  L    G + I + TNG
Sbjct: 77  PLLRKDLSQLIARLTKLEGLKDIGLTTNG 105


>gi|262369704|ref|ZP_06063032.1| molybdopterin biosynthesis protein [Acinetobacter johnsonii SH046]
 gi|262315772|gb|EEY96811.1| molybdopterin biosynthesis protein [Acinetobacter johnsonii SH046]
          Length = 339

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 9/87 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C    +        ++++    +L        +       +TGGEPL++  
Sbjct: 27  DRCNFKCVYC----MPEHPEWMKKHDLLSFEELYHFCKFMVQHGIEQIRITGGEPLMRQG 82

Query: 101 ----VPLIQALNKRGF-EIAVETNGTI 122
               +  +Q+L K+G   I++ TNG  
Sbjct: 83  VVHFIEQLQSLKKQGLKRISMTTNGHY 109


>gi|148244382|ref|YP_001219076.1| oxygen-independent coproporphyrinogen III oxidase [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326209|dbj|BAF61352.1| oxygen-independent coproporphyrinogen III oxidase [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 372

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 32/95 (33%), Gaps = 10/95 (10%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            L           +C +CD  F      +   Y    L DL E+      +  +   L G
Sbjct: 9   PLSLYIHYPWCVKKCPYCD--FNSHDCNQRSGYIESLLEDLNEDLDYIQGRAIQSIFLGG 66

Query: 93  GEPLL---QVDVPLIQALNKR-----GFEIAVETN 119
           G P L   Q    L   L KR       EI +ETN
Sbjct: 67  GTPSLMSEQELFKLFTGLKKRLKFVNDIEITLETN 101


>gi|302874950|ref|YP_003843583.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307690432|ref|ZP_07632878.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302577807|gb|ADL51819.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
          Length = 454

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 25/111 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWITGEKEGRY-C 88
           CNL           +C++C   F       G  G+ ++D     +E              
Sbjct: 105 CNL-----------RCKYC---FADEGEYHGHKGKMSIDTAKKALEYVIKRSGPRKNIEV 150

Query: 89  VLTGGEPLLQVDV--PLIQALNKRG------FEIAVETNGTIEPPQGIDWI 131
            L GGEPL+ +DV   ++Q   + G          + TN T+  P+ +D++
Sbjct: 151 DLFGGEPLMAMDVIKEVVQYGKELGENHKKNIRFTMTTNSTLLTPEVVDFL 201


>gi|196046064|ref|ZP_03113292.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           03BB108]
 gi|228914750|ref|ZP_04078359.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|196023119|gb|EDX61798.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           03BB108]
 gi|228845069|gb|EEM90111.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 306

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 53  DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-R 110
           D+  +Q         D++  L       G  + R   LTGGEPLL+ D+P LI  L K  
Sbjct: 9   DYAFLQEEC--LLTFDEIERLARLFISMGVNKIR---LTGGEPLLRKDLPKLIARLAKLE 63

Query: 111 GFE-IAVETNG 120
           G + I + TNG
Sbjct: 64  GLKDIGLTTNG 74


>gi|196033904|ref|ZP_03101315.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus W]
 gi|196039776|ref|ZP_03107080.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           NVH0597-99]
 gi|228933471|ref|ZP_04096324.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|195993584|gb|EDX57541.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus W]
 gi|196029479|gb|EDX68082.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           NVH0597-99]
 gi|228826200|gb|EEM71980.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 306

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 53  DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-R 110
           D+  +Q         D++  L       G  + R   LTGGEPLL+ D+P LI  L K  
Sbjct: 9   DYAFLQEEC--LLTFDEIERLARLFISMGVNKIR---LTGGEPLLRKDLPKLIARLAKLE 63

Query: 111 GFE-IAVETNG 120
           G + I + TNG
Sbjct: 64  GLKDIGLTTNG 74


>gi|168187698|ref|ZP_02622333.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum C str. Eklund]
 gi|169294421|gb|EDS76554.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum C str. Eklund]
          Length = 164

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 20/95 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           R A+F   SGCN      Q++                 + G    ++ + + I+      
Sbjct: 20  RSALF--LSGCNHNCDECQNKEMQ------------DASYGDDIELEDILNRIKSNIPL- 64

Query: 82  EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
               +    +GGEP  Q      L   + +   +I
Sbjct: 65  ---IKGVTFSGGEPFEQCKELTILANKIKEENLDI 96


>gi|34419505|ref|NP_899518.1| heme biosynthesis domain protein [Vibrio phage KVP40]
 gi|34333186|gb|AAQ64341.1| heme biosynthesis domain protein [Vibrio phage KVP40]
          Length = 350

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 17/93 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR C   +     T    Y++D   D   +   +  K     VL 
Sbjct: 103 CNL-----------ACRMC---YGKNSKTYMDLYDIDDHYDY-TQLDFSIPKGVETVVLY 147

Query: 92  GGEPLLQVDV--PLIQALNKRGFEIAVETNGTI 122
           GGEP +       L + + +   E+ + TNGT+
Sbjct: 148 GGEPFMDKRTVEVLTEVMEETNAEVYILTNGTV 180


>gi|317490866|ref|ZP_07949302.1| cfr family radical SAM enzyme [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920413|gb|EFV41736.1| cfr family radical SAM enzyme [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 419

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I    +TG++     V+ G
Sbjct: 153 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAHKVTGQRPITNVVMMG 212

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL ++  VP +   L+  GF      + + T+G +   + + D I V
Sbjct: 213 MGEPLLNLNNVVPAMNIMLDDFGFGLSKRRVTLSTSGVVPALEKLGDMIDV 263


>gi|291084751|ref|ZP_06541863.2| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 197

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L+DL  +      +E +   + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVKTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L              EI +E N GT+E  + ID+
Sbjct: 66  GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113


>gi|213424104|ref|ZP_03356997.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 573

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L+DL  +      +E +   + 
Sbjct: 201 PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVKTIFIG 260

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L              EI +E N GT+E  + ID+
Sbjct: 261 GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 308


>gi|256389669|ref|YP_003111233.1| radical SAM domain-containing protein [Catenulispora acidiphila
          DSM 44928]
 gi|256355895|gb|ACU69392.1| Radical SAM domain protein [Catenulispora acidiphila DSM 44928]
          Length = 389

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 12/69 (17%)

Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYC 88
          CNL              + D         K G  + + +A     I E   T        
Sbjct: 33 CNLACSYCYIYEGPDQSWRD---------KPGTMSPETIALTASRIAEHVATHRPPWIEV 83

Query: 89 VLTGGEPLL 97
          VL GGEPL+
Sbjct: 84 VLHGGEPLM 92


>gi|229022012|ref|ZP_04178568.1| dehydrogenase [Bacillus cereus AH1272]
 gi|228739268|gb|EEL89708.1| dehydrogenase [Bacillus cereus AH1272]
          Length = 369

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        ++ L   ++E         R   +TGGEP+L        
Sbjct: 39  RCEHCAVGYT-LQPKDPNPLPMELLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 92

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 93  VTPLLKYAHERGVRTQINSNLTIDL 117


>gi|84516756|ref|ZP_01004114.1| molybdenum cofactor biosynthesis protein A [Loktanella
           vestfoldensis SKA53]
 gi|84509224|gb|EAQ05683.1| molybdenum cofactor biosynthesis protein A [Loktanella
           vestfoldensis SKA53]
          Length = 334

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 14/89 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          K     +++L  L       G K+ R   +TGGEPL++ D
Sbjct: 22  DRCDFRCVYC-MSENMTFLPKKDLLTLEELDRLCSAFVRLGVKKLR---ITGGEPLVRRD 77

Query: 101 VPLIQALNKRGFEI---AVE-----TNGT 121
           +  +      G  +   A+E     TNG+
Sbjct: 78  I--LTFFKAMGRHLDSGALEELTLTTNGS 104


>gi|77411520|ref|ZP_00787864.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
           CJB111]
 gi|77162446|gb|EAO73413.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
           CJB111]
          Length = 262

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 40/127 (31%)

Query: 7   KEIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQG 59
            E F ++ G G          RF     GC             +C++C   DT  +    
Sbjct: 16  TESFGSVDGPG---------IRFIIFMQGC-----------KMRCQYCHNPDTWEMETNN 55

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQAL----NKRGFE 113
           +K        + D+++E        G+     ++GGE +LQ+D   I AL     K G  
Sbjct: 56  SKER-----TVEDVLKEALRYKHFWGKDGGITVSGGEAMLQID--FITALFIEAKKLGIH 108

Query: 114 IAVETNG 120
             ++T G
Sbjct: 109 TTLDTCG 115


>gi|307565227|ref|ZP_07627722.1| radical SAM domain protein [Prevotella amnii CRIS 21A-A]
 gi|307346067|gb|EFN91409.1| radical SAM domain protein [Prevotella amnii CRIS 21A-A]
          Length = 378

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 29/116 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-----GGRYNVD---QLADLIEEQWITGEK 83
           CNL            C +C   +V  +G K       R + +    +   I E       
Sbjct: 14  CNL-----------NCDYC---YVFNKGDKSYMREPVRMSEELIKPVVMRINEHCQNNNI 59

Query: 84  EGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIA----VETNGTIEPPQGIDWIC 132
              + +  GGEPLLQ        ++ +     +      ++TN T+   + ID  C
Sbjct: 60  SHFFVIFHGGEPLLQPKSFYKMFVETVKNIIHKTHVSYGLQTNATLLTQEWIDLFC 115


>gi|73668862|ref|YP_304877.1| hypothetical protein Mbar_A1335 [Methanosarcina barkeri str.
           Fusaro]
 gi|72396024|gb|AAZ70297.1| hypothetical protein Mbar_A1335 [Methanosarcina barkeri str.
           Fusaro]
          Length = 363

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL+           C +C   + G        + ++D +  +  +    G       +L
Sbjct: 19  CNLY-----------CHYC---YAGSGHPVDQAQLSLDTIERIASDGRKCG---ASSVLL 61

Query: 91  TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           +GGEP  + D   +    +  G++++V +NGT+
Sbjct: 62  SGGEPFFRKDWFDVFSVFDDYGYDLSVSSNGTL 94


>gi|229159568|ref|ZP_04287582.1| dehydrogenase [Bacillus cereus R309803]
 gi|228623870|gb|EEK80682.1| dehydrogenase [Bacillus cereus R309803]
          Length = 375

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        ++ L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMELLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|229171266|ref|ZP_04298856.1| dehydrogenase [Bacillus cereus MM3]
 gi|228612223|gb|EEK69455.1| dehydrogenase [Bacillus cereus MM3]
          Length = 375

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        ++ L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMELLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|170744386|ref|YP_001773041.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Methylobacterium sp. 4-46]
 gi|168198660|gb|ACA20607.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Methylobacterium sp. 4-46]
          Length = 384

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 20/119 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C                R  VD+  + + E            V+ 
Sbjct: 38  CNLAC--------AGCG----KIDYPDEILNKRLPVDEALESVRECG------APVVVIA 79

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
           GGEPLL  D+P +++ + ++     V TN  +   + I     SP     + + G +E+
Sbjct: 80  GGEPLLHKDLPQIVEGIIQQKKFAIVCTN-ALLLEKKISQYKPSPYFTWSIHLDGDKEM 137


>gi|124514503|gb|EAY56016.1| putative radical SAM family protein [Leptospirillum rubarum]
          Length = 342

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C       +     R   +Q     +E             + 
Sbjct: 38  CNL-----------ECAGCG-KIQYPEEILNKRLTPEQCFQAADECG------APVVTIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL+  ++  ++Q L  R   + + TN  I   + +D I  S      + + G +E
Sbjct: 80  GGEPLIHNEIGEIVQGLVDRKRFVYLCTN-AILLEKYLDRIKPSTYLTLSVHLDGLKE 136


>gi|57642234|ref|YP_184712.1| anaerobic ribonucleoside-triphosphate reductase activating enzyme
           [Thermococcus kodakarensis KOD1]
 gi|57160558|dbj|BAD86488.1| anaerobic ribonucleoside-triphosphate reductase activating enzyme
           [Thermococcus kodakarensis KOD1]
          Length = 236

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 25/102 (24%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ---LADLIEEQWITGEKEG 85
             GCNL           +C FC      +       + +D+   L DL    ++      
Sbjct: 24  LCGCNL-----------KCPFC---HNWLIAEGKECFPLDRGALLGDLSSSSFLVDYFH- 68

Query: 86  RYCVLTGGEPLLQVDVPLIQALNKRG--FEIAVETNGTIEPP 125
               +TGGEPL+Q    L   L +      I++ TN T+  P
Sbjct: 69  ----ITGGEPLMQ-WAELSSLLAEAKELLPISLNTNLTLLKP 105


>gi|30260587|ref|NP_842964.1| hypothetical protein BA_0421 [Bacillus anthracis str. Ames]
 gi|47525697|ref|YP_017046.1| hypothetical protein GBAA_0421 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183436|ref|YP_026688.1| hypothetical protein BAS0408 [Bacillus anthracis str. Sterne]
 gi|65317850|ref|ZP_00390809.1| COG0535: Predicted Fe-S oxidoreductases [Bacillus anthracis str.
           A2012]
 gi|170707171|ref|ZP_02897627.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|229603544|ref|YP_002865034.1| hypothetical protein BAA_0486 [Bacillus anthracis str. A0248]
 gi|254762009|ref|ZP_05213858.1| hypothetical protein BantA9_26321 [Bacillus anthracis str.
           Australia 94]
 gi|30253955|gb|AAP24450.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gi|47500845|gb|AAT29521.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177363|gb|AAT52739.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|170127949|gb|EDS96820.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|229267952|gb|ACQ49589.1| conserved hypothetical protein [Bacillus anthracis str. A0248]
          Length = 375

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMDLLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVPTQINSNLTIDL 123


>gi|313902299|ref|ZP_07835704.1| GTP cyclohydrolase subunit MoaA [Thermaerobacter subterraneus DSM
           13965]
 gi|313467450|gb|EFR62959.1| GTP cyclohydrolase subunit MoaA [Thermaerobacter subterraneus DSM
           13965]
          Length = 360

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQL--ADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           DR + +C +C       +G        + L  A++     I          LTGGEPLL+
Sbjct: 51  DRCNFRCVYC-----MPEGDIPWIPTTEILTFAEIERVVRIVAGMGVEKIRLTGGEPLLR 105

Query: 99  VDV-PLIQALNK-RGFE-IAVETNG 120
             V  L+  L +  G   +++ TNG
Sbjct: 106 PGVEELVARLVRVPGIRSVSMTTNG 130


>gi|260892240|ref|YP_003238337.1| Radical SAM domain protein [Ammonifex degensii KC4]
 gi|260864381|gb|ACX51487.1| Radical SAM domain protein [Ammonifex degensii KC4]
          Length = 480

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 17/94 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           CNL           +CR C  D   +  +       + ++   L+EE             
Sbjct: 132 CNL-----------RCRHCYEDAGSLRPRNLPREELSREEKLALVEE---IARANIPTLS 177

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNGTI 122
            +GGEPL  Q    +     + G  +++ TNGT+
Sbjct: 178 FSGGEPLACQDFWEVAAKARELGLYLSMNTNGTL 211


>gi|281419683|ref|ZP_06250682.1| radical SAM domain protein [Prevotella copri DSM 18205]
 gi|281406212|gb|EFB36892.1| radical SAM domain protein [Prevotella copri DSM 18205]
          Length = 311

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 21/105 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC       + T+  R    +  DL+ ++         + ++ 
Sbjct: 26  CNL-----------NCHFC------PKHTRKKRQLSAEEFDLLTDKIRGKVCFLYFHIM- 67

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSP 135
            GEPLL   +P  I    ++GF+  + +NGT+  P+ +D +   P
Sbjct: 68  -GEPLLHPLLPEFINMAREKGFKTVLTSNGTL-LPKAMDLLDTLP 110


>gi|156937619|ref|YP_001435415.1| radical SAM domain-containing protein [Ignicoccus hospitalis
           KIN4/I]
 gi|156566603|gb|ABU82008.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 592

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           L +    +R    C +C   F   +        ++Q+  ++++    G        LTGG
Sbjct: 135 LLNLVVTNRCDLTCWYC--FFYAEKAGYVYEPTLEQIEFMVKQAMRQGVPLA--VQLTGG 190

Query: 94  EPLLQVDVP-LIQALNKRGFE-IAVETNG 120
           EP ++ D+P +++ L + G   I + T+G
Sbjct: 191 EPTMRSDLPEIVRLLRRLGVRHIQLNTHG 219


>gi|126657591|ref|ZP_01728746.1| hypothetical protein CY0110_07369 [Cyanothece sp. CCY0110]
 gi|126621047|gb|EAZ91761.1| hypothetical protein CY0110_07369 [Cyanothece sp. CCY0110]
          Length = 338

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL                 TD +    T    +N  +            E       + 
Sbjct: 38  CNLACSGCGKIQHP------TDVLARNLTPEECFNAVE------------ECGAPVVSIP 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPLL   +  +++ L +R   + + TN  I   + +     SP     + + G +E
Sbjct: 80  GGEPLLHPQIDEIVKGLVERKKFVYLCTN-AILLEKSLHKFEPSPYFCFSVHLDGLRE 136


>gi|294494694|ref|YP_003541187.1| Wyosine base formation domain protein [Methanohalophilus mahii DSM
           5219]
 gi|292665693|gb|ADE35542.1| Wyosine base formation domain protein [Methanohalophilus mahii DSM
           5219]
          Length = 310

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 76  EQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
           E W    +     +   GEP L      LI+    RG    V TNGT+ 
Sbjct: 114 ELWQQANEPAHVAISLSGEPTLYPYLDELIEEFRSRGVSTFVVTNGTVP 162


>gi|229114076|ref|ZP_04243501.1| dehydrogenase [Bacillus cereus Rock1-3]
 gi|228669346|gb|EEL24763.1| dehydrogenase [Bacillus cereus Rock1-3]
          Length = 375

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        ++ L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMELLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|154484700|ref|ZP_02027148.1| hypothetical protein EUBVEN_02417 [Eubacterium ventriosum ATCC
           27560]
 gi|149734548|gb|EDM50465.1| hypothetical protein EUBVEN_02417 [Eubacterium ventriosum ATCC
           27560]
          Length = 456

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 18/98 (18%)

Query: 32  CNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRY--NVDQLADLIEEQWITGEKEGR 86
           CN+      D  SA    C  C           G R    +D++  ++ +    G     
Sbjct: 110 CNVPWLILMDPTSACNLHCTGC------WAAEYGNRLNLTLDEMDSVVTQGKKLGTYLYM 163

Query: 87  YCVLTGGEPLLQVDVPLIQALNKRGFEIAVE--TNGTI 122
           +   TGGEPL++ D  LI+ L K+  E A    TNGT+
Sbjct: 164 F---TGGEPLVRKDD-LIK-LCKKHKECAFLAFTNGTL 196


>gi|77465064|ref|YP_354567.1| molybdenum cofactor biosynthesis protein A [Rhodobacter sphaeroides
           2.4.1]
 gi|126464516|ref|YP_001045629.1| molybdenum cofactor biosynthesis protein A [Rhodobacter sphaeroides
           ATCC 17029]
 gi|221369058|ref|YP_002520154.1| molybdenum cofactor biosynthesis protein A [Rhodobacter sphaeroides
           KD131]
 gi|77389482|gb|ABA80666.1| GTP cyclohydrolase subunit MoaA [Rhodobacter sphaeroides 2.4.1]
 gi|126106327|gb|ABN78857.1| GTP cyclohydrolase subunit MoaA [Rhodobacter sphaeroides ATCC
           17029]
 gi|221162110|gb|ACM03081.1| GTP cyclohydrolase subunit MoaA [Rhodobacter sphaeroides KD131]
          Length = 338

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C ++       K     +++L  L+      G ++ R   +TGGEPL++  
Sbjct: 26  DRCDLRCTYCMSEHTSFM-PKRELLTLEELDRLVSAFVDLGVRKLR---VTGGEPLVRRG 81

Query: 101 VPLIQALNKRGFEI 114
           +  +      G  +
Sbjct: 82  I--MTFFQAMGRHV 93


>gi|311278552|ref|YP_003940783.1| radical SAM enzyme, Cfr family [Enterobacter cloacae SCF1]
 gi|308747747|gb|ADO47499.1| radical SAM enzyme, Cfr family [Enterobacter cloacae SCF1]
          Length = 388

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 60/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I    +TG++     V+ G
Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG 181

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 239

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N            R  L+            + I Y  
Sbjct: 240 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 285


>gi|312200419|ref|YP_004020480.1| radical SAM domain protein [Frankia sp. EuI1c]
 gi|311231755|gb|ADP84610.1| Radical SAM domain protein [Frankia sp. EuI1c]
          Length = 428

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 27/160 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         +A   +        Q  +  R   +Q    I E   T        VL 
Sbjct: 62  CNLACDYCYVYSAADSGW------RRQPPRMSRRTAEQAIRRIAEHTRTHGLSQVEIVLH 115

Query: 92  GGEPLLQVDVPLIQALNKR-------GFEIAV--ETNGT------IEPPQGIDW-ICVS- 134
           GGEPLL      +  L             + +  +TNG       ++     D  +CVS 
Sbjct: 116 GGEPLL-AGADFVGWLADELRRQIPPPVRVRIVTQTNGVALRAGLLDLLVERDIAVCVSL 174

Query: 135 --PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
             P    D + +   + +  +P+V  + E      + R  
Sbjct: 175 DGPSGAHD-RHRRFADGRRSYPRVREALELLTSAPYRRIF 213


>gi|255505300|ref|ZP_05345283.3| radical SAM domain protein [Bryantella formatexigens DSM 14469]
 gi|255268665|gb|EET61870.1| radical SAM domain protein [Bryantella formatexigens DSM 14469]
          Length = 465

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 20/100 (20%)

Query: 31  GCNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEG 85
           GCN+      D  SA    C  C           G + N+  D++  +IE+    G    
Sbjct: 117 GCNIPWTILLDPTSACNLHCTGC------WAAEYGNKLNLTYDEIDGIIEQGKELGVYLY 170

Query: 86  RYCVLTGGEPLLQVDVPLIQALNKRG---FEIAVETNGTI 122
              + TGGEPL++    LI+   K     F     TNGT+
Sbjct: 171 ---IYTGGEPLVRKKD-LIRLCEKHSDCVFLCF--TNGTL 204


>gi|254415468|ref|ZP_05029228.1| hypothetical protein MC7420_4926 [Microcoleus chthonoplastes PCC
           7420]
 gi|196177649|gb|EDX72653.1| hypothetical protein MC7420_4926 [Microcoleus chthonoplastes PCC
           7420]
          Length = 206

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 29/96 (30%), Gaps = 20/96 (20%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           G  AV     GCN            +C  C  +             VD+LAD I      
Sbjct: 32  GCRAV-VWVQGCN-----------RECASC-FNPASWSFEINQLIAVDELADKI-----L 73

Query: 81  GEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
                +    +GGEP  Q      L + L   G  +
Sbjct: 74  SNPHNQGVTFSGGEPFWQAPALAQLAKKLKAAGLNV 109


>gi|330508288|ref|YP_004384716.1| radical SAM domain-containing protein [Methanosaeta concilii
          GP-6]
 gi|328929096|gb|AEB68898.1| radical SAM domain protein [Methanosaeta concilii GP-6]
          Length = 389

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 21/69 (30%)

Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
          GC            ++C +C             R  ++ + +++E      +        
Sbjct: 20 GCP-----------SKCSYC-----WSSEVGSPRMTIETVGEIVE---WLRDFRDDPVTF 60

Query: 91 T--GGEPLL 97
          T  GGEPLL
Sbjct: 61 TFHGGEPLL 69


>gi|303241655|ref|ZP_07328153.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
 gi|302590770|gb|EFL60520.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
          Length = 425

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 15/103 (14%)

Query: 31  GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G         C             C          KG    +D++ ++++    
Sbjct: 46  GCPFDCGVCPQHDQHACIGLIEVTAKCNLHC--PLCYADAGKGHFLGLDKIENMMDFFQE 103

Query: 80  TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFE-IAVETNG 120
           +   +     ++GGEP L  ++  +I+    + F+ + + TNG
Sbjct: 104 SEGGQAEILQISGGEPTLHPEITEIIKLAKTKKFKYVMLNTNG 146


>gi|303245805|ref|ZP_07332088.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
 gi|302493068|gb|EFL52933.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
          Length = 395

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       +        D + V   GT+  +  +D LA                 + +
Sbjct: 50  CNLKCVHCYAKAV------DPEGVDDIGTEEAKAMIDDLAA----------YGAPVMLFS 93

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPL++ D+  L      RG    + TNGT+
Sbjct: 94  GGEPLVRKDLTELASHATSRGMRAVISTNGTL 125


>gi|257064192|ref|YP_003143864.1| pyruvate-formate lyase-activating enzyme [Slackia
           heliotrinireducens DSM 20476]
 gi|256791845|gb|ACV22515.1| pyruvate-formate lyase-activating enzyme [Slackia
           heliotrinireducens DSM 20476]
          Length = 201

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           S +C  C    +  + +   R + DQLA+ +    +      R    TGG+PL Q D
Sbjct: 27  SKRCPGCANPELW-EASDANRIDNDQLAEALVR--MAKASGTRAITFTGGDPLEQPD 80


>gi|228986690|ref|ZP_04146820.1| Anaerobic ribonucleoside-triphosphate reductase activating
          protein [Bacillus thuringiensis serovar tochigiensis
          BGSC 4Y1]
 gi|228773021|gb|EEM21457.1| Anaerobic ribonucleoside-triphosphate reductase activating
          protein [Bacillus thuringiensis serovar tochigiensis
          BGSC 4Y1]
          Length = 147

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 25/86 (29%)

Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDTDFVGIQGTKGGRYNVDQLADL 73
          GEG       VF  F+GC        +  S   C              G    V+++ + 
Sbjct: 11 GEGLRT---VVF--FAGCPHRCFGCHNPKSWNIC-------------NGIEMTVEEIVEE 52

Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQV 99
          I                +GG+P LQ 
Sbjct: 53 I------ASNPLTDVTFSGGDPFLQA 72


>gi|229074347|ref|ZP_04207385.1| dehydrogenase [Bacillus cereus Rock4-18]
 gi|229095122|ref|ZP_04226117.1| dehydrogenase [Bacillus cereus Rock3-29]
 gi|229101224|ref|ZP_04231988.1| dehydrogenase [Bacillus cereus Rock3-28]
 gi|228682192|gb|EEL36305.1| dehydrogenase [Bacillus cereus Rock3-28]
 gi|228688307|gb|EEL42190.1| dehydrogenase [Bacillus cereus Rock3-29]
 gi|228708789|gb|EEL60924.1| dehydrogenase [Bacillus cereus Rock4-18]
          Length = 375

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        ++ L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMELLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|168217217|ref|ZP_02642842.1| 4Fe-4S binding domain protein/radical SAM domain protein
           [Clostridium perfringens NCTC 8239]
 gi|182380702|gb|EDT78181.1| 4Fe-4S binding domain protein/radical SAM domain protein
           [Clostridium perfringens NCTC 8239]
          Length = 273

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 53/164 (32%), Gaps = 45/164 (27%)

Query: 25  VFCRFSGCNLWS------------------------------GREQDRLSAQCRFCDTDF 54
           +F  F GCN                                   +      +C  CD   
Sbjct: 22  IF--FQGCNFKCLYCHNPETINKCISCGKCVENCEVGALSISDGKVIWDEEECISCDKCI 79

Query: 55  VGIQ---GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNK 109
              +     K   Y+V++L   IE+         R   ++GGE  L     + L + + K
Sbjct: 80  KLCEHMSSPKTKEYSVEELVKKIEK----DSFFIRGITVSGGECTLNSEFLIKLFREVKK 135

Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
            G    V+TNG  +    +  I ++ K   D+K     E + ++
Sbjct: 136 LGLTCFVDTNGNTKLDDEL--INLTDKFMLDVK--SIDEKENIW 175


>gi|167628201|ref|YP_001678700.1| molybdenum cofactor biosynthesis protein a [Heliobacterium
           modesticaldum Ice1]
 gi|226704819|sp|B0TI16|MOAA_HELMI RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|167590941|gb|ABZ82689.1| molybdenum cofactor biosynthesis protein a [Heliobacterium
           modesticaldum Ice1]
          Length = 327

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 15/105 (14%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C     G+           ++   LI    I   +  R   +TGGEPL++ 
Sbjct: 18  DRCNLRCIYC-MPEAGLPLVDHREVLRFEEFERLIA---IAASQGIRRVRITGGEPLVRK 73

Query: 100 DV-PLIQALNKR-GFE-IAVETNGTIEP-------PQGIDWICVS 134
            + P +  +    G E +A+ TNG + P         G+D + +S
Sbjct: 74  GIVPFVARVKTMTGIEDVALTTNGLLLPRFASELKAAGLDRVNIS 118


>gi|157364072|ref|YP_001470839.1| radical SAM domain-containing protein [Thermotoga lettingae TMO]
 gi|157314676|gb|ABV33775.1| Radical SAM domain protein [Thermotoga lettingae TMO]
          Length = 432

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 20/119 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           QC  C   +           N + +  +I+   +          + 
Sbjct: 77  CNL-----------QCIHC--FYESKPDENYQMLNKEYIPLIID---LINRYNIENVTIG 120

Query: 92  GGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPL    +   L + L K   +I + TNG +     I+ I  +P+    + +    E
Sbjct: 121 GGEPLTWPHLRNLLTEILEKTNAKIFLLTNGLL--LDKIEDILTTPRFNVQISLDAVHE 177


>gi|150020405|ref|YP_001305759.1| radical SAM domain-containing protein [Thermosipho melanesiensis
           BI429]
 gi|149792926|gb|ABR30374.1| Radical SAM domain protein [Thermosipho melanesiensis BI429]
          Length = 332

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 15/93 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN             C +  T     +  K  ++  ++L   I ++     K G +  LT
Sbjct: 40  CNAKC--------PACPY--TISTIREKYKNAQFVSEKLFKKIADEC---GKYGAFIRLT 86

Query: 92  GG-EPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GG EP+L  ++  LI+     G +I + TNG++
Sbjct: 87  GGGEPMLHPNIVELIEYAKSVGAKIGLITNGSM 119


>gi|46578994|ref|YP_009802.1| molybdenum cofactor biosynthesis protein A [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120603415|ref|YP_967815.1| molybdenum cofactor biosynthesis protein A [Desulfovibrio vulgaris
           DP4]
 gi|46448407|gb|AAS95061.1| molybdenum cofactor biosynthesis protein A [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120563644|gb|ABM29388.1| GTP cyclohydrolase subunit MoaA [Desulfovibrio vulgaris DP4]
 gi|311232845|gb|ADP85699.1| molybdenum cofactor biosynthesis protein A [Desulfovibrio vulgaris
           RCH1]
          Length = 341

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 12/88 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR + +C +C        G        D +    ++     +  E       LTGGEPL+
Sbjct: 29  DRCNLRCLYC------WGGGGMRFIPHDDILRYEEMARLVDVAVESGVEKVRLTGGEPLV 82

Query: 98  QVDVPLIQALNKRGFE---IAVETNGTI 122
           + +V  +  L ++      + + TNGT+
Sbjct: 83  RKNVLHLVELVRKKHPAIDLRITTNGTL 110


>gi|15607116|ref|NP_214498.1| molybdenum cofactor biosynthesis protein A [Aquifex aeolicus VF5]
 gi|7674126|sp|O67929|MOAA_AQUAE RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|2984358|gb|AAC07877.1| molybdenum cofactor biosynthesis protein A [Aquifex aeolicus VF5]
          Length = 320

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 23/92 (25%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRY---------NVDQLADLIEEQWITGEKEGRYCVLT 91
           DR + +C FC           G  Y           +++ + ++     G ++ R   LT
Sbjct: 19  DRCNLRCNFC--------MPPGKEYNFLPKRQLLTPEEIEEYVKIFAKLGVEKVR---LT 67

Query: 92  GGEPLLQVDV-PLIQALNK-RGFE-IAVETNG 120
           GGEPLL+ D+  +IQ ++K  G + IA+ TNG
Sbjct: 68  GGEPLLREDLEEIIQRISKVEGIKDIALTTNG 99


>gi|238025522|ref|YP_002909754.1| hypothetical protein bglu_2g22180 [Burkholderia glumae BGR1]
 gi|237880187|gb|ACR32519.1| Hypothetical protein bglu_2g22180 [Burkholderia glumae BGR1]
          Length = 386

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 22/116 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +V++    ++E             +
Sbjct: 38  CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
            GGEPLL  D+P +++ + KR   + + TN  +   + +D    SP     + + G
Sbjct: 79  AGGEPLLHRDMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYQPSPYFVWSVHLDG 133


>gi|258516114|ref|YP_003192336.1| molybdenum cofactor biosynthesis protein A [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779819|gb|ACV63713.1| molybdenum cofactor biosynthesis protein A [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 325

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLT 91
           N       DR + +C +C    +   G    R+ ++  L ++ +      +   R    T
Sbjct: 10  NYLRVSVTDRCNLRCVYC----MPAGGVAAARHEDILTLEEIEQVIRAAADVGVRKIRFT 65

Query: 92  GGEPLLQVDVP 102
           GGEPL++  +P
Sbjct: 66  GGEPLVRKGLP 76


>gi|229083725|ref|ZP_04216046.1| dehydrogenase [Bacillus cereus Rock3-44]
 gi|228699583|gb|EEL52247.1| dehydrogenase [Bacillus cereus Rock3-44]
          Length = 375

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        ++ L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMELLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|165870242|ref|ZP_02214898.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0488]
 gi|190567834|ref|ZP_03020745.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis
           Tsiankovskii-I]
 gi|227815047|ref|YP_002815056.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           CDC 684]
 gi|164714130|gb|EDR19651.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0488]
 gi|190560889|gb|EDV14863.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis
           Tsiankovskii-I]
 gi|227004872|gb|ACP14615.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           CDC 684]
          Length = 306

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 53  DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-R 110
           D+  +Q         D++  L       G  + R   LTGGEPLL+ D+P LI  L K  
Sbjct: 9   DYAFLQEEC--LLTFDEIERLARLFISMGVNKIR---LTGGEPLLRKDLPKLIARLAKLE 63

Query: 111 GFE-IAVETNG 120
           G + I + TNG
Sbjct: 64  GLKDIGLTTNG 74


>gi|116628106|ref|YP_820725.1| radical SAM superfamily protein [Streptococcus thermophilus LMD-9]
 gi|116101383|gb|ABJ66529.1| Radical SAM superfamily enzyme [Streptococcus thermophilus LMD-9]
 gi|312278703|gb|ADQ63360.1| Radical SAM superfamily enzyme [Streptococcus thermophilus ND03]
          Length = 439

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 26/163 (15%)

Query: 49  FCDTD--FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQ 105
           +CD    F  +   +       +  + I  Q    +       + GGEP    D+  L+ 
Sbjct: 116 YCDLKCGFCFLANREDRNAKPAKDWERILRQ--AKDNGVLSVSILGGEPTRYFDIDNLLI 173

Query: 106 ALNKRGFEIAVETNG------TIEPPQGIDWIC-------VSPKAGCDLKIKGGQELKLV 152
           A  +   +  + TN       T+E      +I        + PK           EL  V
Sbjct: 174 ACEELKIKTTITTNAQLIKKSTVEILAKSKYITPVLSLQTLDPKLNF--------ELMGV 225

Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
            P   +    Y     ++  +  +      E     + +C +N
Sbjct: 226 RPDRQIKLAKYFKEVGKKCRINAVYTKQSYEQIIELVDFCIEN 268


>gi|83590234|ref|YP_430243.1| radical SAM family protein [Moorella thermoacetica ATCC 39073]
 gi|83573148|gb|ABC19700.1| Radical SAM [Moorella thermoacetica ATCC 39073]
          Length = 441

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 17/85 (20%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQW 78
            G +  F     C+             C FC   F    +G +   +N       +E   
Sbjct: 89  VGSLTFFISLQ-CH-----------RHCFFC---FNPNQEGYEYYTHNQRDCLAELEYLQ 133

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPL 103
            TG+ E ++  LTGGEPLL  +  L
Sbjct: 134 RTGQ-EMKHVALTGGEPLLHPEETL 157


>gi|73662225|ref|YP_301006.1| hypothetical protein SSP0916 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494740|dbj|BAE18061.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 379

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 12/91 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q T      +D +   ++E       + +   +TGGEP+         
Sbjct: 48  RCSHCAVGYT-LQTTDPDPLPMDLIYRRLDEI-----PDLKTMSITGGEPMFSKKSIRNV 101

Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
             PL++  + RG  + + +N T+   + +D 
Sbjct: 102 VKPLLKYAHSRGIYVQMNSNLTLPLDRYLDI 132


>gi|313893341|ref|ZP_07826915.1| six-Cys-in-45 modification radical SAM protein [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442110|gb|EFR60528.1| six-Cys-in-45 modification radical SAM protein [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 469

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 26/112 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ--LADLIEEQWITGEKEGRYCV 89
           CNL            C++C   F       G +  +    +A    +  I      ++C 
Sbjct: 107 CNL-----------ACKYC---FASQGDYGGVKRELMSFDVAKRAVDFLIKMSGPRQHCE 152

Query: 90  LT--GGEPLLQVD--------VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           +   GGEPLL  D        +  IQ  + + F++ + TNG +     ID++
Sbjct: 153 IDFFGGEPLLNWDVVKQTVEYIESIQEQHNKIFKLTLTTNGMLLTQDKIDYV 204


>gi|257456253|ref|ZP_05621450.1| radical SAM domain protein [Treponema vincentii ATCC 35580]
 gi|257446339|gb|EEV21385.1| radical SAM domain protein [Treponema vincentii ATCC 35580]
          Length = 461

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 24/96 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD-------QLADLIEEQWITGEKE 84
           CNL            CRFC T +   +  + G+  +         + D+I        K 
Sbjct: 94  CNLC-----------CRFCFTGYELKK--QYGQLTIQNIHAIFSAIDDIISIHNSYFYKG 140

Query: 85  GRYCVLTGGEPLLQVDVPLIQ----ALNKRGFEIAV 116
                + GGEPLL+ +  L+      L  R   + +
Sbjct: 141 LPTISIFGGEPLLRSNKYLLDEVFKLLKYRNLRVEI 176


>gi|283955608|ref|ZP_06373101.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283792833|gb|EFC31609.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 320

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N        R + +C +C          K    + ++L   I+     G ++ R   +TG
Sbjct: 11  NYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLSFEELFLFIKAAIDEGIEKIR---ITG 67

Query: 93  GEPLLQVDVP-LIQALNK--RGFEIAVETNG 120
           GEPLL+ D+   I+ ++      ++A+ TNG
Sbjct: 68  GEPLLRKDLSIFIKMISDYKSDIDLAITTNG 98


>gi|312199707|ref|YP_004019768.1| hopanoid biosynthesis associated radical SAM protein HpnH [Frankia
           sp. EuI1c]
 gi|311231043|gb|ADP83898.1| hopanoid biosynthesis associated radical SAM protein HpnH [Frankia
           sp. EuI1c]
          Length = 333

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 20/115 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL                             R +V+     +EE             + 
Sbjct: 38  CNLSCTGCGKIQHPA------------NVLKQRMSVEDALAAVEECG------APVVAIA 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
           GGEPL+   +  ++  L KR   + + +NG +   + +     SP     L + G
Sbjct: 80  GGEPLMHPQIHEIVNELTKRKKFVILCSNG-LLLRKKLKNFTPSPYFTFMLHVDG 133


>gi|170750295|ref|YP_001756555.1| molybdenum cofactor biosynthesis protein A [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656817|gb|ACB25872.1| molybdenum cofactor biosynthesis protein A [Methylobacterium
           radiotolerans JCM 2831]
          Length = 350

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 26/167 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C ++ +     K     +++L  L       G ++ R   +TGGEPL++ D
Sbjct: 40  DRCDLRCAYCMSEHMEFL-PKRDLLTLEELDRLCGVFIARGVRKLR---ITGGEPLVRRD 95

Query: 101 V-PLIQAL---NKRGFEIAVE-----TNGTI-------EPPQGIDWICVSPKAGCDLK-- 142
           +  L + L      G   A+E     TNGT            G+  I VS       K  
Sbjct: 96  IMHLFRRLSRHLDSG---ALEELTLTTNGTQLTRYADELASLGVRRINVSLDTLDPDKFR 152

Query: 143 -IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
            I    +LK+V   +  +    +       +L+ ++   + +    A
Sbjct: 153 EITRRGDLKVVLDGIAAARAAGMKVKINAVALRDVNADEIPDMIAWA 199


>gi|89893163|ref|YP_516650.1| pyruvate-formate lyase-activating enzyme [Desulfitobacterium
           hafniense Y51]
 gi|89332611|dbj|BAE82206.1| pyruvate-formate lyase-activating enzyme [Desulfitobacterium
           hafniense Y51]
          Length = 310

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 20/152 (13%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           G    V+ +   +E+  +   + G     +GGEPL+Q +     ++   +R  +  +ET 
Sbjct: 117 GKPITVEDVLKEVEKDSVFYARSGGGLTFSGGEPLMQGNFVAETLKEARRRRLKTTIETC 176

Query: 120 G-----TIEPPQG------IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
           G     T+E          +D  C+ P+   +       EL  +    N   E++     
Sbjct: 177 GYADWSTMERVCQHLTSLIMDIKCMDPEKHQEY-TGASNEL--ILDNFNKLCEHFPKL-- 231

Query: 169 ERFSLQPMDGPF--LEENTNLAISYCFQNPKW 198
            +    P+   F   EE+      +    P  
Sbjct: 232 PKLIRTPVVPGFNDREEDIREIAEFVKDKPNV 263


>gi|27378863|ref|NP_770392.1| molybdenum cofactor biosynthesis protein A [Bradyrhizobium
           japonicum USDA 110]
 gi|81737737|sp|Q89NT2|MOAA_BRAJA RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|27352012|dbj|BAC49017.1| molybdenum cofactor biosynthesis protein A [Bradyrhizobium
           japonicum USDA 110]
          Length = 344

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 30/154 (19%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+     K     +++L  L       G K+ R   LTGGEPL+
Sbjct: 33  DRCDLRCFYCMSEDMTFL----PKADLLTLEELDRLCSAFIAKGVKKLR---LTGGEPLV 85

Query: 98  QVDV-PLIQALNKR---GF--EIAVETNGTIEPPQG------------IDWICVSPKAGC 139
           + +V  L+++L++    G   E+ + TNGT                  +    + PK   
Sbjct: 86  RRNVMTLVRSLSRHLSSGALSELTLTTNGTQLAKYARELADCGVRRINVSLDTLDPKKFR 145

Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
           +  I    E+  V   +  +    +       +L
Sbjct: 146 E--ITRWGEIDKVLEGIEAARAAGLAVKINAVAL 177


>gi|150391787|ref|YP_001321836.1| molybdenum cofactor biosynthesis protein A [Alkaliphilus
          metalliredigens QYMF]
 gi|167011809|sp|A6TVF9|MOAA_ALKMQ RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|149951649|gb|ABR50177.1| molybdenum cofactor biosynthesis protein A [Alkaliphilus
          metalliredigens QYMF]
          Length = 320

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
          N       D  + +C++C  +    + T      ++++  ++    I  E       +TG
Sbjct: 10 NYMRISITDLCNLRCQYCMPEKGIYKKTHQDILTLEEIEQIV---RIGAENGINKVRITG 66

Query: 93 GEPL 96
          GEPL
Sbjct: 67 GEPL 70


>gi|261342372|ref|ZP_05970230.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterobacter cancerogenus ATCC 35316]
 gi|288315007|gb|EFC53945.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Enterobacter cancerogenus ATCC 35316]
          Length = 380

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    LADL  +      +E +   + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVAHLLADLDADVPYAQGREVKTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L              EI +E N GT+E  + +D+
Sbjct: 66  GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFVDY 113


>gi|225848259|ref|YP_002728422.1| molybdenum cofactor biosynthesis protein A [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643519|gb|ACN98569.1| molybdenum cofactor biosynthesis protein A [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 321

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 19/89 (21%)

Query: 41  DRLSAQCRFC--D-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           D+ + +C +C  D  +F+            +++A L++     G K+ R   +TGGEPL+
Sbjct: 12  DKCNLKCFYCRPDNMEFI----PHDEILRYEEIAKLVKAMTKYGLKKVR---ITGGEPLV 64

Query: 98  QVDVP-LIQALNKRGFEIAVE-----TNG 120
           +  +  L+  L        +E     TNG
Sbjct: 65  RPQIENLVSLLKSIP---QIEDIGMTTNG 90


>gi|68250276|ref|YP_249388.1| molybdenum cofactor biosynthesis protein A [Haemophilus influenzae
           86-028NP]
 gi|81335303|sp|Q4QJR9|MOAA_HAEI8 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|68058475|gb|AAX88728.1| molybdenum cofactor biosynthesis protein A [Haemophilus influenzae
           86-028NP]
          Length = 337

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 49/138 (35%), Gaps = 24/138 (17%)

Query: 41  DRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D+ + +C +C        G   +  + +   L ++I       E       LTGGEP L+
Sbjct: 31  DQCNFRCTYC-----LPDGYQPEANKPSFLTLKEIIHLAQAFAEMGTEKIRLTGGEPTLR 85

Query: 99  VDVPLIQALNKR--GFE-IAVETNGTIEPPQGIDW-------ICVS-----PKAGCDLKI 143
            D   I        G   +AV TNG        DW       I VS     PK     +I
Sbjct: 86  KDFISIAESIANIDGIRQLAVTTNGYRMAKDVADWKQAGITSINVSVDSLDPK--MFHQI 143

Query: 144 KGGQELKLVFPQVNVSPE 161
            G  +   V   ++ + E
Sbjct: 144 TGINKFDDVMRGIDRAFE 161


>gi|307691071|ref|ZP_07633517.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
          Length = 463

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 18/91 (19%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCN+           +C+ C +     +         ++  DL  +    G    +Y  L
Sbjct: 18  GCNM-----------RCKHCGS---ICENPLPDELTTEEALDLCRQLGELGM---QYITL 60

Query: 91  TGGEPLLQVDVPLI-QALNKRGFEIAVETNG 120
           +GGEP  + D  LI + L K G    + TNG
Sbjct: 61  SGGEPTTRKDWHLIAKELTKNGVIPNIITNG 91


>gi|291327220|ref|ZP_06127407.2| radical SAM enzyme, Cfr family [Providencia rettgeri DSM 1131]
 gi|291311232|gb|EFE51685.1| radical SAM enzyme, Cfr family [Providencia rettgeri DSM 1131]
          Length = 426

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I     +G +     V+ G
Sbjct: 160 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRPITNVVMMG 219

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 220 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDV 270


>gi|212710618|ref|ZP_03318746.1| hypothetical protein PROVALCAL_01684 [Providencia alcalifaciens DSM
           30120]
 gi|212686699|gb|EEB46227.1| hypothetical protein PROVALCAL_01684 [Providencia alcalifaciens DSM
           30120]
          Length = 399

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I     +G +     V+ G
Sbjct: 133 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRPITNVVMMG 192

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 193 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDV 243


>gi|145633351|ref|ZP_01789082.1| molybdenum cofactor biosynthesis protein A [Haemophilus influenzae
           3655]
 gi|144986197|gb|EDJ92787.1| molybdenum cofactor biosynthesis protein A [Haemophilus influenzae
           3655]
          Length = 337

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 49/138 (35%), Gaps = 24/138 (17%)

Query: 41  DRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D+ + +C +C        G   +  + +   L ++I       E       LTGGEP L+
Sbjct: 31  DQCNFRCTYC-----LPDGYQPEANKPSFLTLKEIIHLAQAFAEMGTEKIRLTGGEPTLR 85

Query: 99  VDVPLIQALNKR--GFE-IAVETNGTIEPPQGIDW-------ICVS-----PKAGCDLKI 143
            D   I        G   +AV TNG        DW       I VS     PK     +I
Sbjct: 86  KDFISIAESIANIDGIRQLAVTTNGYRMAKDVADWKQAGITSINVSVDSLDPK--MFHQI 143

Query: 144 KGGQELKLVFPQVNVSPE 161
            G  +   V   ++ + E
Sbjct: 144 TGINKFDDVMRGIDRAFE 161


>gi|66811420|ref|XP_639890.1| molybdenum cofactor synthesis 1 [Dictyostelium discoideum AX4]
 gi|74853957|sp|Q54NM6|MOCS1_DICDI RecName: Full=Molybdenum cofactor biosynthesis protein 1; Includes:
           RecName: Full=Molybdenum cofactor biosynthesis protein
           A; Includes: RecName: Full=Molybdenum cofactor
           biosynthesis protein C
 gi|60466835|gb|EAL64881.1| molybdenum cofactor synthesis 1 [Dictyostelium discoideum AX4]
          Length = 630

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 21/113 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +   +          D++  L +     G  + R+   T
Sbjct: 77  CNL-----------RCKYCMPEEGVMLSQADKILTTDEIIRLSKLFVSAGVNKIRF---T 122

Query: 92  GGEPLLQVDV-PLIQALNK-RGFE-IAVETNGTIEPPQGIDWICVSPKAGCDL 141
           GGEPL++ DV PLI+ + K +G + I + TNG I   + +D +    KAG +L
Sbjct: 123 GGEPLVRKDVEPLIEEVGKIKGLQKIGITTNG-ILLSRKLDRLH---KAGVNL 171


>gi|325288756|ref|YP_004264937.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324964157|gb|ADY54936.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 341

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 16/101 (15%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVD---------QLADLIEEQWITGEKEGRYCVLTG 92
           R + +C +C       +G  GG+ + +         +L   I +  +   +  +    +G
Sbjct: 35  RCNFKCFYC---MHATRGVAGGQLDREGFRIENMSGELYTKIIKDIMAFPQPPKRIAFSG 91

Query: 93  -GEPLLQVDVP-LIQALNKRGF--EIAVETNGTIEPPQGID 129
            GEPL+  D+P +I+ L   GF   I V TNG +  P+  D
Sbjct: 92  LGEPLMNKDLPNMIKELRDAGFTGRIDVLTNGVLLTPKMAD 132


>gi|229056258|ref|ZP_04195679.1| dehydrogenase [Bacillus cereus AH603]
 gi|229165420|ref|ZP_04293204.1| dehydrogenase [Bacillus cereus AH621]
 gi|228618018|gb|EEK75059.1| dehydrogenase [Bacillus cereus AH621]
 gi|228721063|gb|EEL72601.1| dehydrogenase [Bacillus cereus AH603]
          Length = 369

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        ++ L   ++E         R   +TGGEP+L        
Sbjct: 39  RCEHCAVGYT-LQPKDPNPLPMELLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 92

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 93  VTPLLKYAHERGVRTQINSNLTIDL 117


>gi|205356587|ref|ZP_03223350.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|205345592|gb|EDZ32232.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni
           subsp. jejuni CG8421]
          Length = 320

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N        R + +C +C          K    + ++L   ++     G ++ R   +TG
Sbjct: 11  NYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLSFEELFLFVKAAIDEGIEKIR---ITG 67

Query: 93  GEPLLQVDVP-LIQALNK--RGFEIAVETNG 120
           GEPLL+ D+   I+ +N      ++A+ TNG
Sbjct: 68  GEPLLRKDLSIFIKMINDYKSDIDLAITTNG 98


>gi|114565072|ref|YP_752586.1| molybdenum cofactor biosynthesis protein A [Shewanella
           frigidimarina NCIMB 400]
 gi|114336365|gb|ABI73747.1| molybdenum cofactor biosynthesis protein A [Shewanella
           frigidimarina NCIMB 400]
          Length = 328

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 13/87 (14%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C    +    T   + +V  L +L        E   +   LTGGEPL++ D
Sbjct: 21  DRCDFRCVYC----MSEDPTFLPKSHVLSLEELSWIAQAFTELGVKKIRLTGGEPLVRSD 76

Query: 101 -VPLIQALNKRGFEIAVE-----TNGT 121
              L++ L K      +E     TNG+
Sbjct: 77  CDKLVKLLRKLP---QLEELSMTTNGS 100


>gi|327310414|ref|YP_004337311.1| Radical SAM domain-containing protein [Thermoproteus uzoniensis
           768-20]
 gi|326946893|gb|AEA11999.1| Radical SAM domain protein [Thermoproteus uzoniensis 768-20]
          Length = 574

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 18/104 (17%)

Query: 31  GCNLWSGREQD----------RLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWI 79
           GC L    + D          R +  C  C   F             ++Q+  ++     
Sbjct: 135 GCGLCPVHKSDTVLAIIDVTNRCNMACPVC---FANAGAAGYVYEPTLEQIEYMLRTLRA 191

Query: 80  TGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGFEIAVE--TNG 120
                     L+GGEP L+ D+P I  +  K GF   +E  TNG
Sbjct: 192 QRPWPPNALQLSGGEPTLRDDLPEIVRMAKKLGFT-HIEVNTNG 234


>gi|229115649|ref|ZP_04245054.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock1-3]
 gi|228667791|gb|EEL23228.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock1-3]
          Length = 306

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
             D++  L       G  + R   LTGGEPLL+ D+P LI  L K  G   I + TNG
Sbjct: 20  TFDEIERLARLFISMGVNKIR---LTGGEPLLRKDLPKLIARLAKLEGLTDIGLTTNG 74


>gi|171910922|ref|ZP_02926392.1| putative transferase [Verrucomicrobium spinosum DSM 4136]
          Length = 476

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 50  CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL--TGGEPLLQV-DVPLIQA 106
           C T +       G + +   L ++        +++G   +L  +GGEP L      L   
Sbjct: 124 CPTCYADSPIGTGMKVDAVPLEEIQARVQGVVDRKGGIEILQLSGGEPTLHPQLFELCAW 183

Query: 107 LNKRGF--EIAVETNGTI 122
           L          + TNG +
Sbjct: 184 LKAHPKIDFTLINTNGVL 201


>gi|168213843|ref|ZP_02639468.1| 4Fe-4S binding domain protein/radical SAM domain protein
           [Clostridium perfringens CPE str. F4969]
 gi|170714621|gb|EDT26803.1| 4Fe-4S binding domain protein/radical SAM domain protein
           [Clostridium perfringens CPE str. F4969]
          Length = 273

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 53/164 (32%), Gaps = 45/164 (27%)

Query: 25  VFCRFSGCNLWS------------------------------GREQDRLSAQCRFCDTDF 54
           +F  F GCN                                   +      +C  CD   
Sbjct: 22  IF--FQGCNFKCLYCHNPETINKCISCGKCVENCEVGALSISDGKVIWDEEECISCDKCI 79

Query: 55  ---VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNK 109
                +   K   Y+V++L   IE+         R   ++GGE  L     + L + + K
Sbjct: 80  KLCENMSSPKIKEYSVEELVKKIEK----DSFFIRGITVSGGECTLNSEFLIKLFREVKK 135

Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
            G    V+TNG  +    +  I ++ K   D+K     E + ++
Sbjct: 136 LGLTCFVDTNGNTKLDDEL--INLTDKFMLDVK--SIDEKENIW 175


>gi|163938411|ref|YP_001643295.1| YfkB-like domain-containing protein [Bacillus weihenstephanensis
           KBAB4]
 gi|229009905|ref|ZP_04167124.1| dehydrogenase [Bacillus mycoides DSM 2048]
 gi|163860608|gb|ABY41667.1| YfkB-like domain protein [Bacillus weihenstephanensis KBAB4]
 gi|228751336|gb|EEM01143.1| dehydrogenase [Bacillus mycoides DSM 2048]
          Length = 375

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        ++ L   ++E         R   +TGGEP+L        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMELLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|303244953|ref|ZP_07331277.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
 gi|302484664|gb|EFL47604.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
          Length = 333

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 70  LADLIEEQWITGEKEGRYCVLT-GGEPLLQV-DVPLIQALNKRGFEIAVETNG 120
           + D I E+        ++  ++  GEP +      LI+  +K+G    V +NG
Sbjct: 132 ILDRIGEKKFNEAINPKHVAISLSGEPTIYPYLDELIKLFHKKGLSTFVVSNG 184


>gi|257792306|ref|YP_003182912.1| anaerobic ribonucleoside-triphosphate reductase activating
          protein [Eggerthella lenta DSM 2243]
 gi|325833354|ref|ZP_08165803.1| anaerobic ribonucleoside-triphosphate reductase activating
          protein [Eggerthella sp. HGA1]
 gi|257476203|gb|ACV56523.1| anaerobic ribonucleoside-triphosphate reductase activating
          protein [Eggerthella lenta DSM 2243]
 gi|325485278|gb|EGC87747.1| anaerobic ribonucleoside-triphosphate reductase activating
          protein [Eggerthella sp. HGA1]
          Length = 181

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 19/75 (25%)

Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
          AVF    GC           S  C  C                V  +AD++ E       
Sbjct: 26 AVFV--QGC-----------SHGCPGC----HNPDSQPCAGGTVRAIADVVAEIAANKLV 68

Query: 84 EGRYCVLTGGEPLLQ 98
          +G    ++GGEP  Q
Sbjct: 69 QG--VTVSGGEPFEQ 81


>gi|255523321|ref|ZP_05390291.1| molybdenum cofactor biosynthesis protein A [Clostridium
           carboxidivorans P7]
 gi|255512975|gb|EET89245.1| molybdenum cofactor biosynthesis protein A [Clostridium
           carboxidivorans P7]
          Length = 318

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 6/83 (7%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C  +    +         +++  +I+     G K+ RY   TGGEPL+  +
Sbjct: 18  DRCNLRCIYCMPEQGVSKKCHEDVIRFEEVLKIIKSAVPLGIKKIRY---TGGEPLILKN 74

Query: 101 V-PLIQA--LNKRGFEIAVETNG 120
           +  LI      ++  +IA+ TNG
Sbjct: 75  ISSLISETSKIQQIKDIAITTNG 97


>gi|302875106|ref|YP_003843739.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307690269|ref|ZP_07632715.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302577963|gb|ADL51975.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
          Length = 363

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 15/92 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL+      R +  C          +     +   ++ + +  E    G     + +L 
Sbjct: 72  CNLFCKGCYARANKSC---------GEDIHKIQLPSERWSGIFNEAKELG---ISFILLA 119

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GGEPL+Q D +     + +  F I   TNGT+
Sbjct: 120 GGEPLMQRDIIEKAAEIKEIMFPIF--TNGTM 149


>gi|148262869|ref|YP_001229575.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146396369|gb|ABQ25002.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 446

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 22/93 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C    V  +       N+++L   +E+    G          
Sbjct: 141 CNL-----------ACSHC--SRVTTESPGPDELNLEELISFLEQAGRIG---VSTITFM 184

Query: 92  GGEPLLQV---DVPLIQALNKRGFE-IAVETNG 120
           GGEP       ++ L+  L   G   I+V TNG
Sbjct: 185 GGEPTCHPELIELALVARL--SGIRSISVGTNG 215


>gi|257459147|ref|ZP_05624266.1| molybdenum cofactor biosynthesis protein A [Campylobacter gracilis
           RM3268]
 gi|257443532|gb|EEV18656.1| molybdenum cofactor biosynthesis protein A [Campylobacter gracilis
           RM3268]
          Length = 321

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 10/84 (11%)

Query: 42  RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           R + +CR+C   T F  +      R N+    ++     +  +   +   +TGGEPL++ 
Sbjct: 20  RCNFRCRYCMPATPFNWV-----PRENILSFEEMFLFVKVAIDGGVKKIRITGGEPLVRK 74

Query: 100 DVP-LIQALNK--RGFEIAVETNG 120
            +   I+ +     G ++A+ TNG
Sbjct: 75  GIEDFIKMIADYAPGIDLALTTNG 98


>gi|78484503|ref|YP_390428.1| molybdenum cofactor synthesis-like [Thiomicrospira crunogena XCL-2]
 gi|123728093|sp|Q31JB9|MOAA_THICR RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|78362789|gb|ABB40754.1| GTP cyclohydrolase subunit MoaA [Thiomicrospira crunogena XCL-2]
          Length = 331

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 41  DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           D+ + +C +C        +G      + D+LA +I+     G  + R   +TGGEPL++ 
Sbjct: 20  DKCNYRCGYCMPEQGAHPEGRHTEYLDYDELARIIKAFVDLGVTKVR---ITGGEPLVRK 76

Query: 100 DVP-LIQALN-KRGF-EIAVETN 119
            +P  I+ +    G  EIA+ TN
Sbjct: 77  GLPGFIEEIQPYEGLEEIALSTN 99


>gi|302876914|ref|YP_003845547.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302579771|gb|ADL53783.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
          Length = 504

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 18/91 (19%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCN+           +C+ C +     +         ++  DL  +    G    +Y  L
Sbjct: 15  GCNM-----------RCKHCGS---ICENPLPDELTTEEALDLCRQLGELGM---QYITL 57

Query: 91  TGGEPLLQVDVPLI-QALNKRGFEIAVETNG 120
           +GGEP  + D  LI + L K G    + TNG
Sbjct: 58  SGGEPTTRKDWHLIAKELTKNGVIPNIITNG 88


>gi|301632243|ref|XP_002945200.1| PREDICTED: ribosomal RNA large subunit methyltransferase N-like
           [Xenopus (Silurana) tropicalis]
          Length = 328

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 20/104 (19%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL------IEEQWITGEKEGRYCV 89
               Q   +  CRFC T   G QG        + LA L      + ++  + E+     V
Sbjct: 60  CVSSQAGCAVGCRFCST---GHQGFSRNLSTGEILAQLWYAEHHLRQRLGSSERVISNVV 116

Query: 90  LTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123
           + G GEPL Q    L+ AL       G+      + V T+G + 
Sbjct: 117 MMGMGEPL-QNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVP 159


>gi|241764492|ref|ZP_04762513.1| radical SAM enzyme, Cfr family [Acidovorax delafieldii 2AN]
 gi|241366076|gb|EER60673.1| radical SAM enzyme, Cfr family [Acidovorax delafieldii 2AN]
          Length = 373

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 53/171 (30%), Gaps = 22/171 (12%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLAD-LIEEQWITGEKEGRYCVLTG 92
               Q   +  CRFC T   G     T G        A+  + ++  T  +     V+ G
Sbjct: 104 CVSSQAGCAVGCRFCSTGHQGFSRNLTTGEIVAQLWFAEHALRKRLATQSRVISNVVMMG 163

Query: 93  -GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
            GEPL Q    L+ AL       G+      + V T+G +     +   C  P A     
Sbjct: 164 MGEPL-QNYTALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDC--PVALAVSL 220

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                 L+     +N         D  R  L+     F      +   YC 
Sbjct: 221 HAPNDALRDNLVPLNRKYPLEELLDACRRYLEHAPRDF------ITFEYCM 265


>gi|209965057|ref|YP_002297972.1| molybdenum cofactor biosynthesis protein A [Rhodospirillum centenum
           SW]
 gi|209958523|gb|ACI99159.1| molybdenum cofactor biosynthesis protein A [Rhodospirillum centenum
           SW]
          Length = 348

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+     K    ++++L  L       G ++ R   LTGGEPL+
Sbjct: 32  DRCDFRCVYCMSEDMHFL----PKAEVLSLEELDRLCSAFVRLGTRKLR---LTGGEPLV 84

Query: 98  QVD-VPLIQAL---NKRGF--EIAVETNGT 121
           + D + LI++L    + G   E+ + TNG+
Sbjct: 85  RRDILELIRSLGRHLRTGRLDELTLTTNGS 114


>gi|167756317|ref|ZP_02428444.1| hypothetical protein CLORAM_01850 [Clostridium ramosum DSM 1402]
 gi|167703725|gb|EDS18304.1| hypothetical protein CLORAM_01850 [Clostridium ramosum DSM 1402]
          Length = 366

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D+    C  C         T   +++  +L  +I +    G         TGGEPLL+ D
Sbjct: 70  DKCMYHCWHCSASKFMKDATSNSQFSTLELKKIIAQLQRLGVA---IIGFTGGEPLLRED 126

Query: 101 V-PLIQALNKR 110
           +  LI ++++R
Sbjct: 127 LEELIASIDER 137


>gi|56410451|ref|YP_145825.1| molybdopterin cofactor biosynthesis protein [Geobacillus
           kaustophilus HTA426]
 gi|56378348|dbj|BAD74257.1| molybdopterin cofactor biosynthesis protein (moaA/nifB/pqqE family)
           [Geobacillus kaustophilus HTA426]
          Length = 341

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 17/106 (16%)

Query: 28  RFSGCNLWSGREQ--DRLSAQCRFCDTDFVGIQGT------KGGRYNVDQLADLIEEQWI 79
           R +   L   R    D+ + +C +C      + G       +G    V+++A L E    
Sbjct: 12  RLAR-PLRDLRLSVTDQCNFRCVYC--MPAEVFGPNFRFLDEGQLLTVEEMALLAECFVE 68

Query: 80  TGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGFE-IAVETNGTI 122
            G ++ R   LTGGEPLL+ D+  LI+ L+   G   I + TNG  
Sbjct: 69  LGVEKIR---LTGGEPLLRRDLDALIERLSAIPGLRDIGLTTNGVH 111


>gi|16081565|ref|NP_393921.1| molybdenum cofactor biosynthesis protein A [Thermoplasma
           acidophilum DSM 1728]
 gi|24212010|sp|Q9HKZ7|MOAA_THEAC RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|10639613|emb|CAC11585.1| molybdopterin biosynthesis protein moaA related protein
           [Thermoplasma acidophilum]
          Length = 324

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 19/120 (15%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
           C FC    +      G     +++  +++   I+ E       +TGGEP L+ D+  I  
Sbjct: 26  CFFC---HMEGTDVNGEELTPEEIERVVK---ISHEFGVNKVKITGGEPTLRADIIDIIG 79

Query: 107 LNKRGFE--IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYI 164
             ++     I++ TNGT+            PK   DLK  G   + +     +    ++I
Sbjct: 80  RIRKHITGNISMTTNGTML-----------PKIAKDLKKAGLDRVNISLHSPDDERFHFI 128


>gi|317050296|ref|YP_004111412.1| molybdenum cofactor biosynthesis protein A [Desulfurispirillum
           indicum S5]
 gi|316945380|gb|ADU64856.1| molybdenum cofactor biosynthesis protein A [Desulfurispirillum
           indicum S5]
          Length = 325

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 16/95 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C            TK      +++  ++      G  + R   +T
Sbjct: 24  CNLKCFYCVPEDGI-CH----------ATKDQLLTPEEIIRVLNLLHGLGVSKVR---IT 69

Query: 92  GGEPLLQVDV-PLIQALNKRGFE-IAVETNGTIEP 124
           GGEPL +  +  LI+ ++  GF  IA+ TNG + P
Sbjct: 70  GGEPLARRGIGKLIRQISAIGFSDIAMTTNGVLLP 104


>gi|115372589|ref|ZP_01459896.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|310823867|ref|YP_003956225.1| radical sam domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370310|gb|EAU69238.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396939|gb|ADO74398.1| Radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 290

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 18/91 (19%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            GCN            +C +C    V       G    +QL   +    +T         
Sbjct: 14  GGCNY-----------RCTYC----VQKHMPGIGGPTDEQLEAAL--TTLTALPGSWEFK 56

Query: 90  LTGGEPLLQVDVPLI-QALNKRGFEIAVETN 119
           ++GGEP L   +P + + L   G ++++ TN
Sbjct: 57  ISGGEPFLLKRLPEVAKRLATAGHKVSLLTN 87


>gi|57168666|ref|ZP_00367798.1| molybdopterin cofactor biosynthesis protein A [Campylobacter coli
           RM2228]
 gi|305432705|ref|ZP_07401865.1| molybdenum cofactor biosynthesis protein A [Campylobacter coli
           JV20]
 gi|57019947|gb|EAL56627.1| molybdopterin cofactor biosynthesis protein A [Campylobacter coli
           RM2228]
 gi|304444214|gb|EFM36867.1| molybdenum cofactor biosynthesis protein A [Campylobacter coli
           JV20]
          Length = 320

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N        R + +C +C          K    + ++L   ++     G ++ R   +TG
Sbjct: 11  NYLRISVTQRCNFRCLYCMPKIPFNHQPKENLLSFEELFLFVKVAIDEGIEKIR---ITG 67

Query: 93  GEPLLQVDVP-LIQALNK--RGFEIAVETNG 120
           GEPLL+ D+   I+ +N   +  ++A+ TNG
Sbjct: 68  GEPLLRKDLSVFIKMINDYKKDLDLAITTNG 98


>gi|222824419|ref|YP_002575993.1| molybdenum cofactor biosynthesis protein A [Campylobacter lari
           RM2100]
 gi|254811538|sp|B9KDV3|MOAA_CAMLR RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|222539640|gb|ACM64741.1| molybdenum cofactor biosynthesis protein A [Campylobacter lari
           RM2100]
          Length = 322

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 22/148 (14%)

Query: 42  RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--- 96
           R + +C +C   T F      K    + ++L   ++     G K+ R   +TGGEPL   
Sbjct: 20  RCNFRCLYCMPKTPFEW--SAKENLLSFEELFMFVKVCIDEGVKKIR---ITGGEPLVRK 74

Query: 97  -LQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDW-------ICVS---PKAGCDLKIKG 145
            L   + +I    K+  ++A+ TN ++   Q  D        I +S    K     K+  
Sbjct: 75  DLYKFIAMISE-YKQDIDLALTTNASLLKQQAKDLRQAGLKRINISLDTLKEDVAFKLAQ 133

Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSL 173
              LK V   ++ +        F   +L
Sbjct: 134 KNILKDVLNGIDEALNLGFNVKFNTVAL 161


>gi|332038032|gb|EGI74480.1| molybdenum cofactor biosynthesis protein A [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 323

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 15/98 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGR----YNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
           D  + +C +C        G +GG       +D++++ ++     G ++ R   +TGGEP 
Sbjct: 19  DVCNFKCVYC-----LPDGYQGGHDRGFLTIDEISNTLKAFAHHGIEKVR---ITGGEPT 70

Query: 97  LQVD-VPLIQALNK-RGF-EIAVETNGTIEPPQGIDWI 131
           L+ D + +++A     G  +IA+ TNG        DW+
Sbjct: 71  LRKDFIDVVRAAKDVAGIKKIAMTTNGFSLHKNIHDWV 108


>gi|325287700|ref|YP_004263490.1| molybdenum cofactor biosynthesis protein A [Cellulophaga lytica DSM
           7489]
 gi|324323154|gb|ADY30619.1| molybdenum cofactor biosynthesis protein A [Cellulophaga lytica DSM
           7489]
          Length = 327

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 15/113 (13%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLT 91
           N       DR + +C +C     GI   K  + + +++L  L E     G  + R   +T
Sbjct: 11  NYLRLAVTDRCNLRCNYC-MPSEGINFAKNNKLFTIEELVKLSEIVVSQGIDKIR---IT 66

Query: 92  GGEPLLQVDVP-LIQALN-KRGF-EIAVETNGTIEPP-------QGIDWICVS 134
           GGEP ++ D+  L++ L    G  +I++ TN T+  P        GI  I VS
Sbjct: 67  GGEPFVRKDLMVLLRKLAVLNGLNDISITTNATLIGPYISELKQLGITNINVS 119


>gi|300245943|gb|ADJ94029.1| putative glycyl-radical enzyme [Clostridia bacterium enrichment
           culture clone BF]
          Length = 205

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119
           G  Y+VD+L  +         + G     +GGEP+ Q    L  ++   +     A+ET+
Sbjct: 3   GKYYSVDELLKIFNRDRQFWGERGG-VTFSGGEPMYQSQFLLQVLEKCKEDYIHTAIETS 61

Query: 120 GTIE 123
             I+
Sbjct: 62  AHID 65


>gi|256810179|ref|YP_003127548.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
 gi|256793379|gb|ACV24048.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
          Length = 501

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 19/106 (17%)

Query: 31  GCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           GC    G                  R +  C  C   F     +        +    + E
Sbjct: 72  GCPFDCGLCPTHKSPTVLANIDVTNRCNLNCPIC---FANANKSGKVYEPSFEEIKRMME 128

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
                          GGEP ++ D+P LI+     GF  + + TNG
Sbjct: 129 NLRKEIPPTPAIQFAGGEPTVRPDLPELIKLARDMGFLHVQLATNG 174


>gi|154150123|ref|YP_001403741.1| radical SAM domain-containing protein [Candidatus Methanoregula
           boonei 6A8]
 gi|153998675|gb|ABS55098.1| Radical SAM domain protein [Methanoregula boonei 6A8]
          Length = 389

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 28/98 (28%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GC            ++C++C               +V+ + +++       +        
Sbjct: 14  GCP-----------SKCKYC-----WSSEEGSPIMSVETVHEIVV---WLQDIPRDRVTF 54

Query: 91  T--GGEPLL-------QVDVPLIQALNKRGFEIAVETN 119
           T  GGEPLL       Q    L   L +   E A++TN
Sbjct: 55  TFHGGEPLLAGADFYRQALPLLADGLAQMHPEFAMQTN 92


>gi|149195424|ref|ZP_01872507.1| molybdenum cofactor biosynthesis protein A [Caminibacter
           mediatlanticus TB-2]
 gi|149134429|gb|EDM22922.1| molybdenum cofactor biosynthesis protein A [Caminibacter
           mediatlanticus TB-2]
          Length = 318

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 10/85 (11%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
            R + +C +C  +T F           +V    ++ E   +  ++  +   +TGGEPL++
Sbjct: 19  SRCNFRCMYCMPNTPFEWQPHE-----DVLSYEEMFEFLRLAIDEGVKKIRITGGEPLVR 73

Query: 99  VDVP-LIQALNK--RGFEIAVETNG 120
            ++   I+ L+K  +  ++A+ TNG
Sbjct: 74  KELEVFIKMLSKYNKNLDLALTTNG 98


>gi|114321595|ref|YP_743278.1| coproporphyrinogen III oxidase, anaerobic [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227989|gb|ABI57788.1| coproporphyrinogen III oxidase, anaerobic [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 398

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 21/112 (18%)

Query: 33  NLWSGREQDRLSAQCRFCDT------------DFVGIQGTKGGRYNVDQLADLIEEQWIT 80
            L           +C +CD             D   +      RY    L DL       
Sbjct: 11  PLGVYLHLPWCVQKCPYCDFNSHAPARADRRADASTLPAIPHERYTRAVLTDLASAAGPL 70

Query: 81  GEKEGRYCVLTGGEPLLQVDVP---LIQALNKR-GF----EIAVETN-GTIE 123
             +      + GG P L        L++AL++R G     EI +E N GT+E
Sbjct: 71  QGRRVETVFIGGGTPSLFPPEAIGGLLEALDRRLGLTGDAEITLEANPGTVE 122


>gi|320087536|emb|CBY97301.1| putative oxidase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 382

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L+DL  +      +E +   + 
Sbjct: 10  PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVKTIFIG 69

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L              EI +E N GT+E  + ID+
Sbjct: 70  GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 117


>gi|240104125|ref|YP_002960434.1| molybdenum cofactor biosynthesis protein A [Thermococcus
           gammatolerans EJ3]
 gi|239911679|gb|ACS34570.1| Molybdenum cofactor biosynthesis protein A (moaA) [Thermococcus
           gammatolerans EJ3]
          Length = 308

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 34/167 (20%)

Query: 21  GRVAVFCR---FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           GR     R      CN            +C FC     G +         +++  ++   
Sbjct: 8   GRPVTNLRISLTQECNF-----------RCFFC--HREGQRFLAKNEMTPEEIERIV--- 51

Query: 78  WITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI-------EPPQGID 129
            I      R   LTGGEP ++ D + +++ +     ++++ TNG+            G++
Sbjct: 52  RIASRLGIRKVKLTGGEPTVREDILEIVRRIKPYVIDLSMTTNGSRLKELAKPLAKAGLN 111

Query: 130 WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
            + VS      LK     E+      V+   +   G +     L P+
Sbjct: 112 RVNVS---LHSLK----PEVYKKITGVDALNDVLEGIEEAVKYLSPV 151


>gi|161506344|ref|YP_001573456.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867691|gb|ABX24314.1| hypothetical protein SARI_04541 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 378

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L+DL  +      +E +   + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVKTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L              EI +E N GT+E  + ID+
Sbjct: 66  GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113


>gi|86748851|ref|YP_485347.1| radical SAM family protein [Rhodopseudomonas palustris HaA2]
 gi|86571879|gb|ABD06436.1| Radical SAM [Rhodopseudomonas palustris HaA2]
          Length = 388

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 22/119 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +  +  D  EE             +
Sbjct: 38  CNL-----------ACVGCGKIDY--PDAILDRRMSAQECWDAAEECG------APMVAI 78

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
            GGEPL+  ++  +++ L  R   +++ TN  +   + +     SP     + + G +E
Sbjct: 79  PGGEPLIHREIGEIVRGLVARKKFVSLCTN-ALLLEKKLHLFEPSPYLFFSVHLDGLKE 136


>gi|312962557|ref|ZP_07777047.1| molybdenum cofactor biosynthesis protein A [Pseudomonas fluorescens
           WH6]
 gi|311283137|gb|EFQ61728.1| molybdenum cofactor biosynthesis protein A [Pseudomonas fluorescens
           WH6]
          Length = 322

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 61/176 (34%), Gaps = 30/176 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN                     V  Q           +A LIE   I   +      +T
Sbjct: 21  CNYACTYCVPNGKR--------LVAAQDELSAEAMARGVAYLIEAAGIDRLR------IT 66

Query: 92  GGEPLLQVDVP-LIQALNKRGFE-IAVETNGT-------IEPPQGIDWICVS-PKAGCDL 141
           GGEPL+   +   + A+ + G   I++ TNG        +    GI  I VS      D 
Sbjct: 67  GGEPLVSPKLEAFMGAVGQMGLSDISLTTNGQLLARKLPLLVEAGIKRINVSLDTLDADA 126

Query: 142 --KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
              I  G +L  V   ++ +    I     + ++ P+ G  L++   L + YC + 
Sbjct: 127 FRSIARGGDLATVLDGMDQARAAGIKI---KVNMVPLRGQNLDQVMPL-LDYCLER 178


>gi|300717954|ref|YP_003742757.1| putative Fe-S containing enzyme [Erwinia billingiae Eb661]
 gi|299063790|emb|CAX60910.1| putative Fe-S containing enzyme [Erwinia billingiae Eb661]
          Length = 389

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I    ITG +     V+ G
Sbjct: 123 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGASKITGTRPITNVVMMG 182

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 183 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 233


>gi|262280818|ref|ZP_06058601.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257718|gb|EEY76453.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 384

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 14/105 (13%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIE----EQWITGEKEGRY 87
            L           +C +CD +      G          L  L+     +  +   +    
Sbjct: 10  PLSLYIHMPWCVRKCPYCDFNSHAVPDGALSSELEQTYLKALVADFETQLEMAQGRSIHS 69

Query: 88  CVLTGGEPLL-------QVDVPLIQALN-KRGFEIAVETN-GTIE 123
             + GG P L        +   L   L  + G EI +E N GT+E
Sbjct: 70  VFIGGGTPSLISAQGYVWLFAELKSLLKFEDGCEITLEANPGTVE 114


>gi|238898975|ref|YP_002924657.1| coproporphyrinogen III oxidase, O2-independent, SAM and NAD(P)H
           dependent [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466735|gb|ACQ68509.1| coproporphyrinogen III oxidase, O2-independent, SAM and NAD(P)H
           dependent [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 376

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 10/108 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGT-KGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +   ++G      Y    LADL  +  +T  +      + 
Sbjct: 6   PLSLYIHIPWCIKKCPYCDFNSHALKGELPHEEYVAHLLADLEADIPLTSGRAIETIFIG 65

Query: 92  GGEPLL---QVDVPLIQALNKR-----GFEIAVETN-GTIEPPQGIDW 130
           GG P L   Q    L+  +  R       EI +E N G IE  + +D+
Sbjct: 66  GGTPSLLSAQAMQQLLHGVKARIDIRKDAEITMEANPGAIEAKRFVDY 113


>gi|115350482|ref|YP_772321.1| radical SAM domain-containing protein [Burkholderia ambifaria AMMD]
 gi|115280470|gb|ABI85987.1| Radical SAM domain protein [Burkholderia ambifaria AMMD]
          Length = 358

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 19/104 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C F    F            +  +    + E+   G         
Sbjct: 32  CNLRC--------KGCWF----FENEFDTASHELNDALRFEQRVREEAARGINAPLLI-- 77

Query: 91  TGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP-QGIDWICV 133
            GGEP L +D   I+   K   +++V TNG    P +G + I +
Sbjct: 78  -GGEPALHLDR--IRMFRKHMPKVSVSTNGLRRIPYEGFEDITI 118


>gi|323488006|ref|ZP_08093259.1| molybdenum cofactor biosynthesis protein A [Planococcus donghaensis
           MPA1U2]
 gi|323398274|gb|EGA91067.1| molybdenum cofactor biosynthesis protein A [Planococcus donghaensis
           MPA1U2]
          Length = 338

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D D+  +   K    + +++  L +     G K+ R   LTGG
Sbjct: 23  DRCNFRCSYCMPKEVFGD-DYAFL--PKQELLSFEEIHRLTKVFVAMGVKKIR---LTGG 76

Query: 94  EPLLQVDVP-LIQA-LNKRGFE-IAVETNG 120
           EPL++  +P L++  L+  G E I + TNG
Sbjct: 77  EPLMRRGLPQLVEKILSVEGVEDIGLTTNG 106


>gi|302531846|ref|ZP_07284188.1| radical SAM domain-containing protein [Streptomyces sp. AA4]
 gi|302440741|gb|EFL12557.1| radical SAM domain-containing protein [Streptomyces sp. AA4]
          Length = 301

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 42  RLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99
           R    CR C   +     +   G         +++E    G +  ++    GGEP L   
Sbjct: 13  RCQLSCRQC---YAESGPSGTHGSMTRMDWMRVLDEAGALGVETVQFI---GGEPTLYPH 66

Query: 100 DVPLIQALNKRGFEIAV 116
            VPL++     GF + V
Sbjct: 67  LVPLVEHALDLGFGVEV 83


>gi|302391584|ref|YP_003827404.1| radical SAM domain protein [Acetohalobium arabaticum DSM 5501]
 gi|302203661|gb|ADL12339.1| Radical SAM domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 300

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 21/93 (22%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F  FS CNL           +C +C  ++   Q   G    V++LA+++      G  
Sbjct: 77  TIF--FSSCNL-----------RCVYC-QNYDISQHQSGDAVTVEELAEIMISLQKRGCH 122

Query: 84  EGRYCVLTGGEP--LLQVDVPLIQALNKRGFEI 114
              +       P  ++   +       K+G EI
Sbjct: 123 NINFVT-----PSHMIHALLAATLEACKKGLEI 150


>gi|284035784|ref|YP_003385714.1| radical SAM protein [Spirosoma linguale DSM 74]
 gi|283815077|gb|ADB36915.1| Radical SAM domain protein [Spirosoma linguale DSM 74]
          Length = 349

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 9/87 (10%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
                 + +A+C FC       + T   R  + ++  LI+E +  G       V +GGEP
Sbjct: 6   CFLATYQCNAKCDFC-----ECRPTVKDRIELSEMIRLIDEAYALGTVY--VVVFSGGEP 58

Query: 96  LLQVDVPL--IQALNKRGFEIAVETNG 120
            L  D  L  IQ    +G    V TNG
Sbjct: 59  TLLKDDLLKAIQHATSKGLLTRVVTNG 85


>gi|168463709|ref|ZP_02697626.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195633771|gb|EDX52185.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 378

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 10/108 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L+DL  +      +E +   + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVKTIFIG 65

Query: 92  GGEPLLQ---VDVPLIQALNKR-----GFEIAVETN-GTIEPPQGIDW 130
           GG P L        L+  ++ R       EI +E N GT+E  + ID+
Sbjct: 66  GGTPSLLSGPAMQTLLDGVHARLNLAADAEITMEANPGTVEADRFIDY 113


>gi|168236172|ref|ZP_02661230.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194737657|ref|YP_002116052.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194713159|gb|ACF92380.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290675|gb|EDY30029.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 378

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L+DL  +      +E +   + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVKTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L              EI +E N GT+E  + ID+
Sbjct: 66  GGTPSL-LSGPAMQMLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113


>gi|188582897|ref|YP_001926342.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Methylobacterium populi BJ001]
 gi|179346395|gb|ACB81807.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Methylobacterium populi BJ001]
          Length = 387

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 20/119 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C                R  VD+  + + E            V+ 
Sbjct: 38  CNLAC--------AGCG----KIDYPDEILNKRLPVDEALESVRECG------APVVVIA 79

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
           GGEPLL  D+P ++Q +  +     V TN  +   + I     SP     + + G +E+
Sbjct: 80  GGEPLLHKDLPQIVQGIIAQKKFAIVCTN-ALLLEKKIKDYKPSPYFTWSIHLDGDKEM 137


>gi|148264555|ref|YP_001231261.1| TatD family hydrolase [Geobacter uraniireducens Rf4]
 gi|146398055|gb|ABQ26688.1| hydrolase, TatD family [Geobacter uraniireducens Rf4]
          Length = 462

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 53/165 (32%), Gaps = 39/165 (23%)

Query: 41  DRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEP 95
           +R S +C FC    D    G         +  ++   I       E      V  G GEP
Sbjct: 283 NRCSNRCSFCAKFEDFTVKGHYLLLDHEPDFSEVMAAIAAHKGYDE-----VVFCGYGEP 337

Query: 96  LLQVDV--PLIQALNKRGFEIAVETNGTI----------EPPQGIDWICVS--------- 134
           LL++D+   +  AL K+G  I + T+G            E    ID + VS         
Sbjct: 338 LLRLDLIKEVAAALKKQGMRIRINTDGQANLVYGRNILPELAGLIDTVSVSLNAADEDTY 397

Query: 135 --------PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
                    K G        +E K   PQV  S     G D    
Sbjct: 398 DLLCNTPFSKDGFTGVCTFLREAKQYIPQVIASAVTVPGLDIAEV 442


>gi|126465572|ref|YP_001040681.1| radical SAM domain-containing protein [Staphylothermus marinus F1]
 gi|126014395|gb|ABN69773.1| Radical SAM domain protein [Staphylothermus marinus F1]
          Length = 374

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 15/163 (9%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQV 99
            R +  C +C      I G      + D    +I+E    G  +      +G GEPL+  
Sbjct: 32  TRCNYDCIYC--FRRTIVGEGFHDMDRDLFYKIIDEAVEIGVSK---ISFSGWGEPLIHP 86

Query: 100 DVPLIQAL---NKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156
            +  I  L     +G EI + TNG     + +D+I    + G D  I      +    ++
Sbjct: 87  YI--IDFLYYAKSKGLEILLNTNG-YFLIKYVDYIA---RIGVDDIIVSIDAAEDDVYKL 140

Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199
                +          L+ M          + I +      +R
Sbjct: 141 IRRGGDLARVIEALLILKDMKIKKNMFYPRVNIQFTINRYNYR 183


>gi|94968044|ref|YP_590092.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550094|gb|ABF40018.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 366

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 19/90 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C                    +Q  + ++E             + 
Sbjct: 38  CNLAC--------AGCG----KIQYPGHILKKELTPEQCFNAVDECG------APMVSIP 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           GGEPL+   +  +++ L  R   I + TNG
Sbjct: 80  GGEPLMHPQIVEIVEGLLARKKYIYLCTNG 109


>gi|16761879|ref|NP_457496.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143366|ref|NP_806708.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56415042|ref|YP_152117.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197363971|ref|YP_002143608.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|213051776|ref|ZP_03344654.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213580617|ref|ZP_03362443.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213609097|ref|ZP_03368923.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213648210|ref|ZP_03378263.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213850156|ref|ZP_03381054.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289825936|ref|ZP_06545095.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25284568|pir||AH0878 probable oxygen-independent coproporphyrinogen III oxidase
           [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16504181|emb|CAD02928.1| possible oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29139000|gb|AAO70568.1| possible oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|56129299|gb|AAV78805.1| possible oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197095448|emb|CAR61007.1| possible oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
          Length = 378

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L+DL  +      +E +   + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVKTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L              EI +E N GT+E  + ID+
Sbjct: 66  GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113


>gi|323463736|gb|ADX75889.1| molybdenum cofactor biosynthesis protein A [Staphylococcus
           pseudintermedius ED99]
          Length = 340

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C    +         +  +    +++    +  +   +   +TGGEPLL+ 
Sbjct: 22  DRCNFRCDYCMPKEIFGDNYVFLPKNQLLSFEEIVRITKLYAQLGVKKVRITGGEPLLRR 81

Query: 100 DVP-LIQALNK-RGFE-IAVETNG 120
           D+  LI  + +  G E I + TNG
Sbjct: 82  DLHQLIAQITQIEGIEDIGLTTNG 105


>gi|307720758|ref|YP_003891898.1| Radical SAM domain-containing protein [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978851|gb|ADN08886.1| Radical SAM domain protein [Sulfurimonas autotrophica DSM 16294]
          Length = 373

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 18/102 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C   +      +      +Q+   I E    G    ++ + +
Sbjct: 33  CNL-----------SCLHC---YSKSTLDEVDTLTTEQIKKTILEMKDNG---VKFIIFS 75

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
           GGEPL + D+  +     + G    + +NG       I  I 
Sbjct: 76  GGEPLTRKDLFEIADFCKENGIITYLSSNGLYFTKGNIKKIT 117


>gi|302876919|ref|YP_003845552.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302579776|gb|ADL53788.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
          Length = 504

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 18/91 (19%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCN+           +C+ C +     +         ++  DL  +    G    +Y  L
Sbjct: 15  GCNM-----------RCKHCGS---ICENPLPDELTTEEALDLCRQLGELGM---QYITL 57

Query: 91  TGGEPLLQVDVPLI-QALNKRGFEIAVETNG 120
           +GGEP  + D  LI + L K G    + TNG
Sbjct: 58  SGGEPTTRKDWHLIAKELTKNGVIPNIITNG 88


>gi|290956407|ref|YP_003487589.1| hypothetical protein SCAB_19011 [Streptomyces scabiei 87.22]
 gi|260645933|emb|CBG69024.1| putative hypothetical protein [Streptomyces scabiei 87.22]
          Length = 801

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 6/66 (9%)

Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
          C+L          A   +      G  GT        + A+ I E          + VL 
Sbjct: 19 CDLACDHCYVYQHADQSW-----RGRPGTMSEE-TFRRTAERIAEHAAAHRLPRVHVVLH 72

Query: 92 GGEPLL 97
          GGEPLL
Sbjct: 73 GGEPLL 78


>gi|255021491|ref|ZP_05293536.1| Molybdenum cofactor biosynthesis protein A [Acidithiobacillus
           caldus ATCC 51756]
 gi|254969074|gb|EET26591.1| Molybdenum cofactor biosynthesis protein A [Acidithiobacillus
           caldus ATCC 51756]
          Length = 332

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LI 104
            CR+C +   G     G  +    L +      I G    ++  LTGGEPL+   +  L+
Sbjct: 27  ACRYC-SPEEGSPYFAGADH--LTLTEYGRLLAIFGGLGVQHVRLTGGEPLIYPRLAGLL 83

Query: 105 QALNKRGFEI-AVETNGTIEPPQG------------IDWICVSPKAGCDLKIKGGQELKL 151
           + L        +V TNG + P               I    + P        +GG   K 
Sbjct: 84  EMLPTLAIPQWSVSTNGVLLPRWATPLREAGVRKVNISLDTLDP-QRFAWLTRGGSLAKA 142

Query: 152 VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRL 200
           +     +      GFD    ++  +D   + E+T +  ++  Q  + R 
Sbjct: 143 LH---GIEAALDAGFDSVAINVVLLDAHSVTESTRMVETFVPQGAQVRF 188


>gi|237732747|ref|ZP_04563228.1| radical SAM-superfamily protein [Mollicutes bacterium D7]
 gi|229384170|gb|EEO34261.1| radical SAM-superfamily protein [Coprobacillus sp. D7]
          Length = 402

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D+    C  C         T   +++  +L  +I +    G         TGGEPLL+ D
Sbjct: 106 DKCMYHCWHCSASKFMKDATSNSQFSTLELKKIIAQLQRLGVA---IIGFTGGEPLLRED 162

Query: 101 V-PLIQALNKR 110
           +  LI ++++R
Sbjct: 163 LEELIASIDER 173


>gi|154253144|ref|YP_001413968.1| molybdenum cofactor biosynthesis protein A [Parvibaculum
           lavamentivorans DS-1]
 gi|154157094|gb|ABS64311.1| molybdenum cofactor biosynthesis protein A [Parvibaculum
           lavamentivorans DS-1]
          Length = 345

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 11/84 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C ++ +     K     +++L  +       G ++ R   LTGGEPL++ D
Sbjct: 34  DRCDFRCVYCMSEHMNFL-PKPELLTLEELDRVCSAFIAKGVRKLR---LTGGEPLVRRD 89

Query: 101 V-PLIQALNKRGFEIAVETNGTIE 123
           V  LI++L +      +E +G ++
Sbjct: 90  VMTLIRSLGR-----HLE-SGALD 107


>gi|163852873|ref|YP_001640916.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Methylobacterium extorquens PA1]
 gi|218531699|ref|YP_002422515.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Methylobacterium chloromethanicum CM4]
 gi|240140201|ref|YP_002964678.1| Radical SAM superfamily protein [Methylobacterium extorquens AM1]
 gi|254562638|ref|YP_003069733.1| Radical SAM superfamily protein [Methylobacterium extorquens DM4]
 gi|163664478|gb|ABY31845.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Methylobacterium extorquens PA1]
 gi|218524002|gb|ACK84587.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Methylobacterium chloromethanicum CM4]
 gi|240010175|gb|ACS41401.1| Radical SAM superfamily protein [Methylobacterium extorquens AM1]
 gi|254269916|emb|CAX25894.1| Radical SAM superfamily protein [Methylobacterium extorquens DM4]
          Length = 387

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 20/119 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C                R  VD+  + + E            V+ 
Sbjct: 38  CNLAC--------AGCG----KIDYPDEILNKRLPVDEALESVRECG------APVVVIA 79

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
           GGEPLL  D+P ++Q +  +     V TN  +   + I     SP     + + G +E+
Sbjct: 80  GGEPLLHKDLPQIVQGIIAQKKFAIVCTN-ALLLEKKIKDYKPSPYFTWSIHLDGDKEM 137


>gi|193213491|ref|YP_001999444.1| radical SAM domain-containing protein [Chlorobaculum parvum NCIB
           8327]
 gi|193086968|gb|ACF12244.1| Radical SAM domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 425

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 27/107 (25%)

Query: 25  VFC--RFSGCNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +F   R   CNL            C++ D T    ++GT     +V+Q+   + E+ I G
Sbjct: 72  IFITDR---CNLGCVY--------CKYADLTQLSEVRGT-----DVEQICRTL-EKLIRG 114

Query: 82  EKEGRYCVLTGGEPLL------QVDVPLIQALNKRGFEIAVETNGTI 122
           +K+ R     GGEPLL      Q+   L    ++  F  A+++NGT+
Sbjct: 115 KKQVR-ITFQGGEPLLMHREIDQICAFLTGNFSEIEFSFALQSNGTL 160


>gi|204928090|ref|ZP_03219290.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|204322412|gb|EDZ07609.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 378

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L+DL  +      +E +   + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVKTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L              EI +E N GT+E  + ID+
Sbjct: 66  GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113


>gi|152974241|ref|YP_001373758.1| YfkB-like domain-containing protein [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022993|gb|ABS20763.1| YfkB-like domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 375

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        ++ L   ++E         R   +TGGEP++        
Sbjct: 45  RCEHCAVGYT-LQPKDPNPLPMELLLKRLDEV-----PHLRSLSITGGEPMMSKKSVDNY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 99  VTPLLKYAHERGVRTQINSNLTIDL 123


>gi|330508579|ref|YP_004385007.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6]
 gi|328929387|gb|AEB69189.1| radical SAM domain protein [Methanosaeta concilii GP-6]
          Length = 493

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 14/103 (13%)

Query: 31  GCNLWSGREQD----------RLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC L  G  ++           ++++C   C   F    G       + Q+A +++    
Sbjct: 79  GCPLDCGLCENHKSGTLLGIIDVTSRCNLSCPICFA-DAGNDKNEPTIGQIASMMQVLRD 137

Query: 80  TGEKEGRYCVLTGGEPLLQVDVPLIQALNK-RGF-EIAVETNG 120
                      +GGEP ++VD+P I  L K  GF +I + TNG
Sbjct: 138 QIPVPCPAIQFSGGEPTMRVDLPDIVYLAKTMGFAQILLATNG 180


>gi|242399539|ref|YP_002994964.1| hypothetical protein TSIB_1564 [Thermococcus sibiricus MM 739]
 gi|242265933|gb|ACS90615.1| hypothetical protein TSIB_1564 [Thermococcus sibiricus MM 739]
          Length = 355

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 90  LTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTIEPPQ 126
           ++GGEPLL+ D+   LI+  N    +  +ETNGT+  P 
Sbjct: 59  ISGGEPLLRSDLAITLIKVANNSKVKTVLETNGTLITPP 97


>gi|167630039|ref|YP_001680538.1| radical sam [Heliobacterium modesticaldum Ice1]
 gi|167592779|gb|ABZ84527.1| radical sam [Heliobacterium modesticaldum Ice1]
          Length = 331

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 49  FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL 107
           FCD  +           N  +   L++E    G    +  + +GGEPL++ D+  L+   
Sbjct: 14  FCDHCYRDAGVKADQELNTQEGKQLLDEIAKAG---FKIMIFSGGEPLMRPDIVELVAYA 70

Query: 108 NKRGFEIAVETNGTI 122
             +G      TNGT+
Sbjct: 71  TSKGLRSVFGTNGTL 85


>gi|156932938|ref|YP_001436854.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
           sakazakii ATCC BAA-894]
 gi|205829756|sp|A7MGV3|RLMN_ENTS8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|156531192|gb|ABU76018.1| hypothetical protein ESA_00741 [Cronobacter sakazakii ATCC BAA-894]
          Length = 388

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 60/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I    +TG++     V+ G
Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG 181

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 239

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N            R  +    G        + I Y  
Sbjct: 240 APN-DEIRDEIVPINKKYNIETFLAAVRRYI----GKSNANQGRVTIEYVM 285


>gi|85707986|ref|ZP_01039052.1| hypothetical protein NAP1_02085 [Erythrobacter sp. NAP1]
 gi|85689520|gb|EAQ29523.1| hypothetical protein NAP1_02085 [Erythrobacter sp. NAP1]
          Length = 336

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          K     +++L DL       G  + R   +TGGEPL++ D
Sbjct: 26  DRCDLRCTYC-MPERMTFLPKREVLTLEELYDLASGFIDRGVTKIR---ITGGEPLVRRD 81

Query: 101 V-PLIQAL---NKRGF-EIAVETNGT 121
           +  LI+AL      G  E+ + TN T
Sbjct: 82  IVDLIRALGRKLGEGLEELTLTTNAT 107


>gi|46203602|ref|ZP_00051292.2| COG0535: Predicted Fe-S oxidoreductases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 387

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 20/119 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A C                R  VD+  + + E            V+ 
Sbjct: 38  CNLAC--------AGCG----KIDYPDEILNKRLPVDEALESVRECG------APVVVIA 79

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
           GGEPLL  D+P ++Q +  +     V TN  +   + I     SP     + + G +E+
Sbjct: 80  GGEPLLHKDLPQIVQGIIAQKKFAIVCTN-ALLLEKKIKEYKPSPYFTWSIHLDGDKEM 137


>gi|262198850|ref|YP_003270059.1| radical SAM protein [Haliangium ochraceum DSM 14365]
 gi|262082197|gb|ACY18166.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365]
          Length = 416

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 9/62 (14%)

Query: 90  LTGGEPLLQVDV-PLIQALNKRGF--EIAVETNGTIEPPQG------IDWICVSPKAGCD 140
           ++GGEPLL  D+  +++ +   G    + + TNG +    G      +D + +S  A   
Sbjct: 197 VSGGEPLLHPDIAAILRMMRASGVSERVRLFTNGLLLASMGDDFWDALDELTISSYASAP 256

Query: 141 LK 142
           +K
Sbjct: 257 VK 258


>gi|326201082|ref|ZP_08190954.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325988650|gb|EGD49474.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 362

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 13/100 (13%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       R    C           G +  +   ++  ++  E    G     + +L 
Sbjct: 71  CNLRCSGCYARELHSCS---------DGVRNSQLTWERWEEVFGEAEDLG---ISFILLA 118

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           GGEPL++ DV +++A +++     + TNG +     ID  
Sbjct: 119 GGEPLMRRDV-VVKAADRKNIIFPIFTNGLLIDDFYIDLF 157


>gi|228989607|ref|ZP_04149591.1| dehydrogenase [Bacillus pseudomycoides DSM 12442]
 gi|228995795|ref|ZP_04155455.1| dehydrogenase [Bacillus mycoides Rock3-17]
 gi|229003415|ref|ZP_04161235.1| dehydrogenase [Bacillus mycoides Rock1-4]
 gi|228757793|gb|EEM07018.1| dehydrogenase [Bacillus mycoides Rock1-4]
 gi|228763956|gb|EEM12843.1| dehydrogenase [Bacillus mycoides Rock3-17]
 gi|228770144|gb|EEM18724.1| dehydrogenase [Bacillus pseudomycoides DSM 12442]
          Length = 410

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        ++ L   ++E         R   +TGGEP+L        
Sbjct: 80  RCEHCAVGYT-LQPKDPNPLPMELLLKRLDEI-----PHLRSLSITGGEPMLSKKSVDNY 133

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
             PL++  ++RG    + +N TI+ 
Sbjct: 134 VTPLLKYAHERGVRTQINSNLTIDL 158


>gi|239825986|ref|YP_002948610.1| YfkB-like domain protein [Geobacillus sp. WCH70]
 gi|239806279|gb|ACS23344.1| YfkB-like domain protein [Geobacillus sp. WCH70]
          Length = 374

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   +EE         R   +TGGEP+L +      
Sbjct: 44  RCEHCAVGYT-LQTKDPEALPLDLLIQRLEEI-----PHLRSLSITGGEPMLSLKSVNNY 97

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
            VPL++  ++RG    + +N T+E 
Sbjct: 98  VVPLLKYAHERGVRTQLNSNLTLEL 122


>gi|308377797|ref|ZP_07480440.2| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu009]
 gi|308354521|gb|EFP43372.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu009]
          Length = 355

 Score = 36.9 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 16/89 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C         T       +++  ++ E    G +E     LT
Sbjct: 112 CNLC-----------CDYC--CVSSSPSTPHRELGAERIGRIVGEAARWGVRELF---LT 155

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GGEP L  D+  I A   +     V TNG
Sbjct: 156 GGEPFLLPDIDTIIATCVKQLPTTVLTNG 184


>gi|282163414|ref|YP_003355799.1| hypothetical protein MCP_0744 [Methanocella paludicola SANAE]
 gi|282155728|dbj|BAI60816.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 301

 Score = 36.9 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134
           GEP L   +  L+  L +RG    + TNGT   P  ++ +  S
Sbjct: 126 GEPTLYPHLKELVALLGERGMSTFIVTNGTR--PDVLEKVTPS 166


>gi|218753389|ref|ZP_03532185.1| MoaA-related protein [Mycobacterium tuberculosis GM 1503]
          Length = 354

 Score = 36.9 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 16/89 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C         T       +++  ++ E    G +E     LT
Sbjct: 88  CNLC-----------CDYC--CVSSSPSTPHRELGAERIGRIVGEAARWGVRELF---LT 131

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GGEP L  D+  I A   +     V TNG
Sbjct: 132 GGEPFLLPDIDTIIATCVKQLPTTVLTNG 160


>gi|200388353|ref|ZP_03214965.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199605451|gb|EDZ03996.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 378

 Score = 36.9 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L+DL  +      +E +   + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVKTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L              EI +E N GT+E  + ID+
Sbjct: 66  GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113


>gi|168264450|ref|ZP_02686423.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|168819866|ref|ZP_02831866.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205343497|gb|EDZ30261.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205347072|gb|EDZ33703.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|322613501|gb|EFY10442.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322621093|gb|EFY17951.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624157|gb|EFY20991.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628104|gb|EFY24893.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633223|gb|EFY29965.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636199|gb|EFY32907.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639537|gb|EFY36225.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647530|gb|EFY44019.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648714|gb|EFY45161.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653769|gb|EFY50095.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657875|gb|EFY54143.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663978|gb|EFY60177.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669011|gb|EFY65162.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672995|gb|EFY69102.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678014|gb|EFY74077.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681190|gb|EFY77223.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687880|gb|EFY83847.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323194924|gb|EFZ80111.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199628|gb|EFZ84718.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202625|gb|EFZ87665.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207888|gb|EFZ92834.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212560|gb|EFZ97377.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214957|gb|EFZ99705.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222687|gb|EGA07052.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225430|gb|EGA09662.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230555|gb|EGA14673.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235094|gb|EGA19180.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239133|gb|EGA23183.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244509|gb|EGA28515.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247124|gb|EGA31090.1| HemN family oxidoreductase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253393|gb|EGA37222.1| HemN family oxidoreductase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256300|gb|EGA40036.1| HemN family oxidoreductase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262524|gb|EGA46080.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267380|gb|EGA50864.1| HemN family oxidoreductase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269216|gb|EGA52671.1| HemN family oxidoreductase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 378

 Score = 36.9 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L+DL  +      +E +   + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVKTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L              EI +E N GT+E  + ID+
Sbjct: 66  GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113


>gi|300864159|ref|ZP_07109053.1| Molybdenum cofactor biosynthesis protein A [Oscillatoria sp. PCC
           6506]
 gi|300337849|emb|CBN54199.1| Molybdenum cofactor biosynthesis protein A [Oscillatoria sp. PCC
           6506]
          Length = 328

 Score = 36.9 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 14/88 (15%)

Query: 41  DRLSAQCRFC--DT---DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
           DR + +C++C  D+   D++  Q          +L  L+ E +I          LTGGEP
Sbjct: 13  DRCNFRCQYCMPDSAEIDYILQQ----ELLTHQELLTLLREVFIPVGFTRFR--LTGGEP 66

Query: 96  LLQVD-VPLIQALNKRG--FEIAVETNG 120
           LL    V L++A+  +    ++++ TNG
Sbjct: 67  LLHPGAVELVRAIASQPETKDLSMTTNG 94


>gi|298676034|ref|YP_003727784.1| radical SAM domain-containing protein [Methanohalobium evestigatum
           Z-7303]
 gi|298289022|gb|ADI74988.1| Radical SAM domain protein [Methanohalobium evestigatum Z-7303]
          Length = 498

 Score = 36.9 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 15/91 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +       ++          + +Q+ D+++               +
Sbjct: 98  CNLNCPICFANAKER------GYIY-------EPSFEQIRDMLQMLRNEEPTPCYAVQFS 144

Query: 92  GGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
           GGEP ++ D+P +I      GF +I + TNG
Sbjct: 145 GGEPTVRDDLPDIIAMARDMGFIQIQIATNG 175


>gi|226954112|ref|ZP_03824576.1| molybdopterin biosynthesis, protein A [Acinetobacter sp. ATCC
           27244]
 gi|226835153|gb|EEH67536.1| molybdopterin biosynthesis, protein A [Acinetobacter sp. ATCC
           27244]
          Length = 343

 Score = 36.9 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 9/84 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C    +        + ++     L         +      +TGGEPL++  
Sbjct: 31  DRCNFKCVYC----MPEHPEWMKKQDLLSFEALFLFCQYMVSQGIENIRITGGEPLMRQG 86

Query: 101 ----VPLIQALNKRGF-EIAVETN 119
               +  +QAL   G   I++ TN
Sbjct: 87  VVHFIAELQALRAEGLKRISITTN 110


>gi|209544124|ref|YP_002276353.1| pyrroloquinoline quinone biosynthesis protein PqqE
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531801|gb|ACI51738.1| coenzyme PQQ biosynthesis protein E [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 372

 Score = 36.9 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 10/84 (11%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVD--QLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           R   QC +C ++ + + G +G     +  ++ D   E  +           +GGEP+ + 
Sbjct: 25  RCPLQCPYC-SNPLALDGREGELSTAEWRRVLDQAAELGVLQ------VHFSGGEPMARA 77

Query: 100 DVP-LIQALNKRGFEIAVETNGTI 122
           D+P L++    RG    + T+G +
Sbjct: 78  DLPDLVRHAAGRGLYTNLITSGVL 101


>gi|162147062|ref|YP_001601523.1| pyrroloquinoline quinone biosynthesis protein PqqE
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785639|emb|CAP55210.1| putative Coenzyme PQQ synthesis protein E [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 357

 Score = 36.9 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 10/84 (11%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVD--QLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           R   QC +C ++ + + G +G     +  ++ D   E  +           +GGEP+ + 
Sbjct: 10  RCPLQCPYC-SNPLALDGREGELSTAEWRRVLDQAAELGVLQ------VHFSGGEPMARA 62

Query: 100 DVP-LIQALNKRGFEIAVETNGTI 122
           D+P L++    RG    + T+G +
Sbjct: 63  DLPDLVRHAAGRGLYTNLITSGVL 86


>gi|293401520|ref|ZP_06645663.1| pyruvate formate-lyase activating enzyme [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305158|gb|EFE46404.1| pyruvate formate-lyase activating enzyme [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 298

 Score = 36.9 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 2/65 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
           G       +   + +     +        +GGEP +QV     ++Q     G   AVET 
Sbjct: 101 GEDMESKAILHEVMKDKDYYDMSHGGVTFSGGEPFVQVTSLCEILQEAKALGLHTAVETT 160

Query: 120 GTIEP 124
           G    
Sbjct: 161 GNYPL 165


>gi|270339544|ref|ZP_06005172.2| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Prevotella bergensis DSM 17361]
 gi|270334754|gb|EFA45540.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Prevotella bergensis DSM 17361]
          Length = 203

 Score = 36.9 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 20/83 (24%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           +GC             +C  C           G   +V+++  +IE              
Sbjct: 64  AGCP-----------NECPGCHNPQSW-DIRNGHEMSVEEIMQVIEA------DPFANVT 105

Query: 90  LTGGEPLLQVD--VPLIQALNKR 110
            +GG+P+ Q D    L +A+ +R
Sbjct: 106 FSGGDPMFQPDGFAELAKAIRER 128


>gi|212704758|ref|ZP_03312886.1| hypothetical protein DESPIG_02822 [Desulfovibrio piger ATCC 29098]
 gi|212671821|gb|EEB32304.1| hypothetical protein DESPIG_02822 [Desulfovibrio piger ATCC 29098]
          Length = 393

 Score = 36.9 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            +       R + +C  C    V + G      + +Q   +I++            + +G
Sbjct: 40  PVVVWNMTKRCNLKCVHCYAQAVPVDGADD--ISTEQAKTMIDDL---AAYGAPVMLFSG 94

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GEPL++ D+  L      +G    + TNGT+
Sbjct: 95  GEPLVRKDLVELASHATAKGMRAVISTNGTL 125


>gi|329934724|ref|ZP_08284765.1| Transcriptional regulator [Streptomyces griseoaurantiacus M045]
 gi|329305546|gb|EGG49402.1| Transcriptional regulator [Streptomyces griseoaurantiacus M045]
          Length = 427

 Score = 36.9 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 5/73 (6%)

Query: 40  QDRLSAQCRFCDTDFVGIQGTKGG--RYNVDQL---ADLIEEQWITGEKEGRYCVLTGGE 94
             R    C +C       Q  +G   R  ++ +   A LI              VL GGE
Sbjct: 36  HSRCDLACDYCYMYEAADQSWRGRPRRMELETVRRTAALIAAHAREHRPAEVRIVLHGGE 95

Query: 95  PLLQVDVPLIQAL 107
           PLL     L + L
Sbjct: 96  PLLVGARHLEELL 108


>gi|302878316|ref|YP_003846880.1| Radical SAM domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302581105|gb|ADL55116.1| Radical SAM domain protein [Gallionella capsiferriformans ES-2]
          Length = 354

 Score = 36.9 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 20/103 (19%)

Query: 47  CRFCDTDFVGIQGTKGGRYNV-DQLA-----DLIEEQWITGEKEGRYCVLTGG-EPLLQV 99
           C +C   +       G   +  D +      +++E+    G K       +GG EPLL  
Sbjct: 43  CWYC--AYRVSNLQLGEDIDYKDTIPKAKMFEIVEDVIAMGVKA---VTFSGGGEPLLYK 97

Query: 100 DVP-LIQALNKRGFEIAVETNGTIEPPQGID-------WICVS 134
            +P +++ L + G  +A  TNG+    +  D       W+ VS
Sbjct: 98  PLPEVVKRLAEGGVRVATLTNGSNLKGRVADAFAEYGTWVRVS 140


>gi|110678879|ref|YP_681886.1| nitrite reductase heme biosynthesis J protein, putative
           [Roseobacter denitrificans OCh 114]
 gi|109454995|gb|ABG31200.1| nitrite reductase heme biosynthesis J protein, putative
           [Roseobacter denitrificans OCh 114]
          Length = 404

 Score = 36.9 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            +       R + +CR C T          G  +  Q   +I++     E +    +L+G
Sbjct: 26  PVVIWNLTRRCNLKCRHCYT--TSSDNIFPGELSTKQALGVIDDL---AEFKIPALILSG 80

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
           GEPL + D+  L Q   ++   +A+ TNGT
Sbjct: 81  GEPLSRGDIYELAQYAREKVRYLALSTNGT 110


>gi|255505693|ref|ZP_05347582.3| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Bryantella formatexigens DSM 14469]
 gi|255266329|gb|EET59534.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Bryantella formatexigens DSM 14469]
          Length = 162

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 21/94 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +F    GC              C  C           G   +   + + I      G   
Sbjct: 15  IF--TQGCP-----------HHCPGCHNPQT-HDPEGGRLADTGAILEQI-----FGNPL 55

Query: 85  GRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAV 116
                 +GGEP +Q    VPL + +  RG  + +
Sbjct: 56  LSGVTFSGGEPFVQAAALVPLAEEIKARGKHLMI 89


>gi|254425081|ref|ZP_05038799.1| pyruvate formate-lyase 1-activating enzyme [Synechococcus sp. PCC
           7335]
 gi|196192570|gb|EDX87534.1| pyruvate formate-lyase 1-activating enzyme [Synechococcus sp. PCC
           7335]
          Length = 261

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 24/103 (23%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C++C   DT         G    V+ L   I++   
Sbjct: 39  IRFVIFTQGCRL-----------RCQYCHNPDTR----DPHGGKAVTVEALIQEIKQYRT 83

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
                G    ++GGEPLLQ +    + Q     G   A++T+G
Sbjct: 84  YMHSSGGGVTVSGGEPLLQPEFVREIFQQCQAEGIHTALDTSG 126


>gi|226304301|ref|YP_002764259.1| molybdenum cofactor biosynthesis protein MoaA [Rhodococcus
           erythropolis PR4]
 gi|226183416|dbj|BAH31520.1| molybdenum cofactor biosynthesis protein MoaA [Rhodococcus
           erythropolis PR4]
          Length = 352

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 17/114 (14%)

Query: 17  GGHAGRV-AVFC--RFSGCNLWSGRE---QDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQ 69
           G H+GR  + F   RF    +         ++ S +C +C    +  +G +     ++  
Sbjct: 16  GSHSGRPESDFLVDRFGR--VARDLRVSITEKCSLRCTYC----MPEEGLEAIASQDLLS 69

Query: 70  LADLIEEQWITGEKEG-RYCVLTGGEPLLQVDVPLIQALNKR---GFEIAVETN 119
           + +++    +  +  G R    TGGEPL++ D+  I A   R   G  +++ TN
Sbjct: 70  VEEIVRVVGVGVDLVGIREVRFTGGEPLMRSDLESIIAGCARRVPGIPLSITTN 123


>gi|167032628|ref|YP_001667859.1| radical SAM domain-containing protein [Pseudomonas putida GB-1]
 gi|166859116|gb|ABY97523.1| Radical SAM domain protein [Pseudomonas putida GB-1]
          Length = 472

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 14/94 (14%)

Query: 47  CRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLI 104
           C FC   FV  +        ++     LIEE    G     +  + GGEP L    V LI
Sbjct: 145 CEFC---FVTDEKWDIKEIQSIHSWGRLIEEAKECG---VPFISILGGEPTLYPGLVALI 198

Query: 105 QALNKRGFEIAVETNG------TIEPPQGIDWIC 132
           +   +   +    +NG       IE  +  +W+ 
Sbjct: 199 RKAEQEKIKTTFTSNGLQCPGEVIEALENSEWVT 232


>gi|119719790|ref|YP_920285.1| radical SAM domain-containing protein [Thermofilum pendens Hrk 5]
 gi|119524910|gb|ABL78282.1| Radical SAM domain protein [Thermofilum pendens Hrk 5]
          Length = 374

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 16/80 (20%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F  F+GC           S +C +C    +  +   G +    +LA +    ++ G +
Sbjct: 156 TIF--FTGC-----------SFKCVYCQNWDISTRVDNGEKVTPQELAGIATALYLRGAR 202

Query: 84  EGRYCVLTGGEPLLQVDVPL 103
              Y    GG P  Q+ V L
Sbjct: 203 NINYV---GGNPDQQLHVIL 219


>gi|317471603|ref|ZP_07930947.1| molybdenum cofactor biosynthesis protein A [Anaerostipes sp.
           3_2_56FAA]
 gi|316900918|gb|EFV22888.1| molybdenum cofactor biosynthesis protein A [Anaerostipes sp.
           3_2_56FAA]
          Length = 324

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 20/107 (18%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR + +CR+C   D   V          + ++L  + E     G  + +   +TGGEPL+
Sbjct: 18  DRCNLRCRYCMPEDIPSV----EHTDILSYEELLSICESAADLGICKFK---ITGGEPLV 70

Query: 98  QVDVP-LIQALNKRG--FEIAVETNGTIEPP-------QGIDWICVS 134
           +      I+ L +     ++ + +NG +  P        GID I +S
Sbjct: 71  RKGCAGFIERLKQLPGVRQVTLTSNGLLLEPYLERLKEAGIDGINIS 117


>gi|238024105|ref|YP_002908337.1| hypothetical protein bglu_2g06740 [Burkholderia glumae BGR1]
 gi|237878770|gb|ACR31102.1| Hypothetical protein bglu_2g06740 [Burkholderia glumae BGR1]
          Length = 289

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 11/68 (16%)

Query: 92  GGEPLLQV-DVPLIQALNKRGF--EIAVETNG------TIEPPQGIDWICVS--PKAGCD 140
           GGEPLL    V LI  +   G    I+V TNG      +    Q +D + +S  PK G  
Sbjct: 91  GGEPLLHPELVELIGRVRDTGIAPTISVTTNGLKLGEMSDAFWQAVDALTISRYPKPGLS 150

Query: 141 LKIKGGQE 148
             +    E
Sbjct: 151 ADLIAHIE 158


>gi|303280559|ref|XP_003059572.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459408|gb|EEH56704.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 406

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 28  RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
           RF+ C       Q   + +C FC T   G +         D++ + +        +    
Sbjct: 152 RFTVC----VSSQVGCAMRCSFCATGRQGFK----RNLTSDEIVNQVLALEDVFGRRATN 203

Query: 88  CVLTG-GEPLLQVDVPL 103
            V+ G GEPL+ +   L
Sbjct: 204 VVMMGMGEPLMNLKEVL 220


>gi|83717731|ref|YP_440432.1| radical SAM domain-containing protein [Burkholderia thailandensis
           E264]
 gi|83651556|gb|ABC35620.1| radical SAM domain protein [Burkholderia thailandensis E264]
          Length = 371

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 22/116 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +V++    ++E             +
Sbjct: 23  CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 63

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
            GGEPLL  ++P +++ + KR   + + TN  +   + +D    SP     + + G
Sbjct: 64  AGGEPLLHKEMPEIVRGIMKRKKFVYLCTN-ALLMEKKMDDYEPSPYFVWSVHLDG 118


>gi|90426035|ref|YP_534405.1| molybdenum cofactor synthesis-like [Rhodopseudomonas palustris
           BisB18]
 gi|90108049|gb|ABD90086.1| molybdenum cofactor synthesis-like [Rhodopseudomonas palustris
           BisB18]
          Length = 340

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 10/88 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C    +G       R  +  L +L            R   LTGGEPL++ +
Sbjct: 30  DRCNFRCSYC----LGAHPVFAPRAELLTLDELDRLCSAFVGCGVRRVRLTGGEPLVRRN 85

Query: 101 V-PLIQALNKRGF-----EIAVETNGTI 122
           +   ++AL++        EI + TNG +
Sbjct: 86  LMSFVRALSRHLVSGALDEITMTTNGAL 113


>gi|269140148|ref|YP_003296849.1| hypothetical protein ETAE_2805 [Edwardsiella tarda EIB202]
 gi|267985809|gb|ACY85638.1| hypothetical protein ETAE_2805 [Edwardsiella tarda EIB202]
 gi|304559982|gb|ADM42646.1| Ribosomal RNA large subunit methyltransferase N [Edwardsiella tarda
           FL6-60]
          Length = 411

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I  Q +TG +     V+ G
Sbjct: 145 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAQKVTGNRPITNVVMMG 204

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   +P ++  L+  GF      + + T+G +     + D I V
Sbjct: 205 MGEPLLNLTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 255


>gi|170289899|ref|YP_001736715.1| pyruvate-formate lyase-activating enzyme [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170173979|gb|ACB07032.1| Pyruvate-formate lyase-activating enzyme [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 138

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 6/49 (12%)

Query: 89  VLTGGEPLLQVD--VPLIQALN-KRG-FEIAVETNGTIEPPQGI--DWI 131
           +++GGEP +  D  + LI+ L  +RG   I V+TNG++     I  D+I
Sbjct: 6   IISGGEPTIHGDSLLELIKILRIRRGDLPIRVDTNGSLPKVMKIIADYI 54


>gi|167579085|ref|ZP_02371959.1| radical SAM domain protein [Burkholderia thailandensis TXDOH]
 gi|167617198|ref|ZP_02385829.1| radical SAM domain protein [Burkholderia thailandensis Bt4]
 gi|257141074|ref|ZP_05589336.1| radical SAM domain-containing protein [Burkholderia thailandensis
           E264]
          Length = 386

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 22/116 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +V++    ++E             +
Sbjct: 38  CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
            GGEPLL  ++P +++ + KR   + + TN  +   + +D    SP     + + G
Sbjct: 79  AGGEPLLHKEMPEIVRGIMKRKKFVYLCTN-ALLMEKKMDDYEPSPYFVWSVHLDG 133


>gi|150376062|ref|YP_001312658.1| pyrroloquinoline quinone biosynthesis protein PqqE [Sinorhizobium
           medicae WSM419]
 gi|150030609|gb|ABR62725.1| coenzyme PQQ biosynthesis protein E [Sinorhizobium medicae WSM419]
          Length = 375

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVD 100
           R    C +C       Q       + D+  D+  +    G        L+GGEP   +  
Sbjct: 31  RCPLACPYCSNPIALTQA--KEELSTDEWVDVFAQAADLGVLHLH---LSGGEPASRRDL 85

Query: 101 VPLIQALNKRGFEIAVETNG 120
           V L QA    G    + T+G
Sbjct: 86  VDLTQAAGSLGLYTNLITSG 105


>gi|212223938|ref|YP_002307174.1| pyruvate formate lyase activating protein-like protein
           [Thermococcus onnurineus NA1]
 gi|212008895|gb|ACJ16277.1| pyruvate formate lyase activating protein-like protein
           [Thermococcus onnurineus NA1]
          Length = 350

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 19/81 (23%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            VF  FSGCN            +C FC  ++   Q   G  Y  +++A+ I   +  G K
Sbjct: 136 TVF--FSGCNF-----------RCVFC-QNWDISQFRAGVEYPPNEMAEKITVAFAQGAK 181

Query: 84  EGRYCVLTGGEPLLQVDVPLI 104
              +    GGEP    ++P I
Sbjct: 182 NVNFV---GGEPT--PNLPFI 197


>gi|94263035|ref|ZP_01286854.1| Radical SAM:Molybdenum cofactor synthesis-like [delta
           proteobacterium MLMS-1]
 gi|93456578|gb|EAT06686.1| Radical SAM:Molybdenum cofactor synthesis-like [delta
           proteobacterium MLMS-1]
          Length = 338

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 21/109 (19%)

Query: 27  CRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            R +    CNL       R    C          +  +    + ++L  L+      G  
Sbjct: 25  VRLAVTDRCNLNC--RYCRPKGPC----------EEPRRELLSYEELERLVRLLVAMGIS 72

Query: 84  EGRYCVLTGGEPLL-QVDVPLIQALNK-RGFE-IAVETNGTIEPPQGID 129
           + R   LTGGEPL+    +  +  L    G E +A+ TN T+      D
Sbjct: 73  KVR---LTGGEPLVRHGMIAFMGRLRAIAGLEQLALTTNATLLASHLDD 118


>gi|94269536|ref|ZP_01291489.1| Radical SAM:Molybdenum cofactor synthesis-like [delta
           proteobacterium MLMS-1]
 gi|93451185|gb|EAT02100.1| Radical SAM:Molybdenum cofactor synthesis-like [delta
           proteobacterium MLMS-1]
          Length = 338

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 21/109 (19%)

Query: 27  CRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            R +    CNL       R    C          +  +    + ++L  L+      G  
Sbjct: 25  VRLAVTDRCNLNC--RYCRPKGPC----------EEPRRELLSYEELERLVRLLVAMGIS 72

Query: 84  EGRYCVLTGGEPLL-QVDVPLIQALNK-RGFE-IAVETNGTIEPPQGID 129
           + R   LTGGEPL+    +  +  L    G E +A+ TN T+      D
Sbjct: 73  KVR---LTGGEPLVRHGMIAFMGRLRAIAGLEQLALTTNATLLASHLDD 118


>gi|25027857|ref|NP_737911.1| molybdenum cofactor biosynthesis protein A [Corynebacterium
           efficiens YS-314]
 gi|259506248|ref|ZP_05749150.1| molybdopterin cofactor biosynthesis protein A [Corynebacterium
           efficiens YS-314]
 gi|23493140|dbj|BAC18111.1| putative molybdopterin biosynthesis protein MoaA2 [Corynebacterium
           efficiens YS-314]
 gi|259166152|gb|EEW50706.1| molybdopterin cofactor biosynthesis protein A [Corynebacterium
           efficiens YS-314]
          Length = 381

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 17/91 (18%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEK-EGRYCVLTGGEPL 96
           DR + +C +C      +          +Q    A+ I    I  EK   R    TGGEPL
Sbjct: 63  DRCNLRCTYC------MPAEGLEWMPTEQTLSDAETIRLIRIAVEKLGIRQIRFTGGEPL 116

Query: 97  LQVDVP----LIQALN-KRG--FEIAVETNG 120
           L+ ++        AL    G     A+ TNG
Sbjct: 117 LRKNLEDIISATTALRTDEGETVRTALTTNG 147


>gi|294676269|ref|YP_003576884.1| molybdenum cofactor biosynthesis protein A [Rhodobacter capsulatus
           SB 1003]
 gi|294475089|gb|ADE84477.1| molybdenum cofactor biosynthesis protein A-1 [Rhodobacter
           capsulatus SB 1003]
          Length = 333

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 15/86 (17%)

Query: 41  DRLSAQCRFC-D--TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C D  T F+     +    ++++L  L       G ++ R   LTGGEPLL
Sbjct: 21  DRCDFRCSYCMDEGTRFL----PRADLLSLEELDRLCSVFIGLGVRKLR---LTGGEPLL 73

Query: 98  QVDVPLIQALNKRGFEIAVETNGTIE 123
           + +V  +     RG    +ET G + 
Sbjct: 74  RRNV--MSLF--RGLSRHLET-GALH 94


>gi|182678756|ref|YP_001832902.1| molybdenum cofactor biosynthesis protein A [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182634639|gb|ACB95413.1| molybdenum cofactor biosynthesis protein A [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 351

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+     K     +++L  L       G K  R   +TGGEPL+
Sbjct: 40  DRCDMRCTYCMAEDMHFL----PKEQLLTLEELDRLCSAFIARGVKTLR---ITGGEPLI 92

Query: 98  QVD-VPLIQALNKRGF-----EIAVETNGT 121
           + + + L +AL++        E+ + TNG+
Sbjct: 93  RRNILSLFRALSRHLKSGALSELTLTTNGS 122


>gi|160931645|ref|ZP_02079039.1| hypothetical protein CLOLEP_00476 [Clostridium leptum DSM 753]
 gi|156869290|gb|EDO62662.1| hypothetical protein CLOLEP_00476 [Clostridium leptum DSM 753]
          Length = 300

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 94  EPLLQVDV--PLIQALNKRGFEIAVETNG 120
           EPL+Q D    L+ A  K G    +ET+G
Sbjct: 133 EPLMQPDFTYELLSAAKKEGLHTCLETSG 161


>gi|108801440|ref|YP_641637.1| molybdenum cofactor biosynthesis protein A [Mycobacterium sp. MCS]
 gi|119870593|ref|YP_940545.1| molybdenum cofactor biosynthesis protein A [Mycobacterium sp. KMS]
 gi|126437425|ref|YP_001073116.1| molybdenum cofactor biosynthesis protein A [Mycobacterium sp. JLS]
 gi|122976488|sp|Q1B3F3|MOAA_MYCSS RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|166217883|sp|A3Q648|MOAA_MYCSJ RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|166217884|sp|A1ULP7|MOAA_MYCSK RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|108771859|gb|ABG10581.1| GTP cyclohydrolase subunit MoaA [Mycobacterium sp. MCS]
 gi|119696682|gb|ABL93755.1| GTP cyclohydrolase subunit MoaA [Mycobacterium sp. KMS]
 gi|126237225|gb|ABO00626.1| GTP cyclohydrolase subunit MoaA [Mycobacterium sp. JLS]
          Length = 350

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 67/180 (37%), Gaps = 23/180 (12%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPL--- 96
           DR + +C +C     G+    G +  + D+L  L+                TGGEPL   
Sbjct: 41  DRCNLRCTYC-MPAEGLDWLPGEQLLSADELIRLLR--IAVTRLGITNVRFTGGEPLVVR 97

Query: 97  -LQVDVPLIQALNKRGFEIAVETNG-------TIEPPQGIDWICV---SPKAGCDLKIKG 145
            L+  V    AL  R  E+A+ TNG             G+D + V   S  A    +I  
Sbjct: 98  HLEDVVAATGALRPRP-EMAMTTNGIGLAKRARALKAAGLDRVNVSLDSVDAAHFARITR 156

Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN-PKWRLSVQT 204
              L  V   +  + E  +        L P  G  L++  +L + YC  +  + R+  Q 
Sbjct: 157 RDRLGDVLAGLAAAKEAGLTPVKVNAVLDPDTG--LDDAVSL-LRYCLDHGYQLRIIEQM 213


>gi|325968382|ref|YP_004244574.1| pyruvate formate lyase activating enzyme [Vulcanisaeta moutnovskia
           768-28]
 gi|323707585|gb|ADY01072.1| pyruvate formate lyase activating enzyme [Vulcanisaeta moutnovskia
           768-28]
          Length = 435

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 18/93 (19%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F  F+ CN            +C FC    +      G   N  Q+A       + G  
Sbjct: 151 TIF--FTSCNF-----------RCAFCQNADISRDRFNGVVMNPRQIASAAVILRLEGVH 197

Query: 84  EGRYCVLTGGEPL--LQVDVPLIQALNKRGFEI 114
              +    GGEP   L   V  I+ +  +G ++
Sbjct: 198 NINWV---GGEPTPHLHNIVETIRLIANQGIKV 227


>gi|321313219|ref|YP_004205506.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis BSn5]
 gi|320019493|gb|ADV94479.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis BSn5]
          Length = 341

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 10/55 (18%)

Query: 90  LTGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEP-------PQGIDWICVS 134
           LTGGEPL++ D+P LI+ L +  G   IA+ TNG++ P         G+  + +S
Sbjct: 76  LTGGEPLMRKDMPELIKKLARIPGIRDIAMTTNGSLLPVYAKRLKEAGLKRVTIS 130


>gi|319783607|ref|YP_004143083.1| molybdenum cofactor biosynthesis protein A [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169495|gb|ADV13033.1| molybdenum cofactor biosynthesis protein A [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 331

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 64/170 (37%), Gaps = 32/170 (18%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+     K    ++++L  L       G +  R   LTGGEPL+
Sbjct: 20  DRCDFRCTYCMAEDMAFL----PKKDLLSLEELDRLCTVFIEKGVRRLR---LTGGEPLV 72

Query: 98  QVDV-PLIQALNKRGFEIAVE-----TNGTI-------EPPQGIDWICVS------PKAG 138
           + ++  L++ L++     A+E     TNG+            G+  I VS       K  
Sbjct: 73  RKNIMHLVRQLSRHLESGALEELTLTTNGSQLSRFAAELADCGVRRINVSLDTLDADKFH 132

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
              KI     L  V   ++ +    +       +L+  +   L E    A
Sbjct: 133 ---KITRWGHLDKVMQGIDAAQAAGLKVKLNAVALKDFNDAELPEMMRWA 179


>gi|291486249|dbj|BAI87324.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis
           subsp. natto BEST195]
          Length = 341

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 10/55 (18%)

Query: 90  LTGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEP-------PQGIDWICVS 134
           LTGGEPL++ D+P LI+ L +  G   IA+ TNG++ P         G+  + +S
Sbjct: 76  LTGGEPLMRKDMPELIKKLARIPGIRDIAMTTNGSLLPVYAKRLKEAGLKRVTIS 130


>gi|258515124|ref|YP_003191346.1| anaerobic ribonucleoside triphosphate reductase activating protein
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778829|gb|ACV62723.1| anaerobic ribonucleoside triphosphate reductase activating protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 155

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 19/85 (22%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           ++F    GC+        R    C     +        G   +    +++I+E W   + 
Sbjct: 23  SIFI--QGCH--------RRCEGCH----NPSLQPFEGGEEMDT---SEIIDEIWRNRDY 65

Query: 84  EGRYCVLTGGEPLLQVDVPLIQALN 108
                V  GGEPL Q +  L + L 
Sbjct: 66  YES-VVFVGGEPLDQPE-SLKELLK 88


>gi|255524293|ref|ZP_05391251.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|296185250|ref|ZP_06853660.1| radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|255511976|gb|EET88258.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|296050084|gb|EFG89508.1| radical SAM domain protein [Clostridium carboxidivorans P7]
          Length = 394

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C      +      +  G  ++ +   LIE+    GE +    + 
Sbjct: 47  CNLKC--------MHC------YAESDNKQYEGELSLKEAESLIEDL---GEFKVPVILF 89

Query: 91  TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           +GGEPLL+ D+  ++    K      + TNGT+
Sbjct: 90  SGGEPLLRKDIFHILDYTKKYNIRSTLSTNGTL 122


>gi|118431072|ref|NP_147264.2| molybdenum cofactor biosynthesis protein MoaA [Aeropyrum pernix K1]
 gi|116062398|dbj|BAA79443.2| molybdenum cofactor biosynthesis protein MoaA [Aeropyrum pernix K1]
          Length = 367

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 21/102 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL--IEEQWITGEKEGRYCV 89
           CNL            C FC         T+ G       + +  +E+  I GE   R  V
Sbjct: 33  CNL-----------DCFFC----HMEGATESGPMRPGSWSPVLSVEDYDIIGEAASRLGV 77

Query: 90  ----LTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQG 127
               LTGGEPL++ DV  I A+  R  E+++ TNG + P + 
Sbjct: 78  DSFKLTGGEPLIRGDVDKIVAVLARYGEVSMTTNGILLPLKA 119


>gi|16080723|ref|NP_391551.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221311629|ref|ZP_03593476.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221315956|ref|ZP_03597761.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221320868|ref|ZP_03602162.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221325153|ref|ZP_03606447.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|730103|sp|P39757|MOAA_BACSU RecName: Full=Molybdenum cofactor biosynthesis protein A;
           Short=Protein narA
 gi|516272|emb|CAA84540.1| unknown [Bacillus subtilis subsp. subtilis str. 168]
 gi|1648856|emb|CAB03683.1| MoaA-like protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2636195|emb|CAB15687.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 341

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 10/55 (18%)

Query: 90  LTGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEP-------PQGIDWICVS 134
           LTGGEPL++ D+P LI+ L +  G   IA+ TNG++ P         G+  + +S
Sbjct: 76  LTGGEPLMRKDMPELIKKLARIPGIRDIAMTTNGSLLPVYAKRLKEAGLKRVTIS 130


>gi|6685662|sp|Q9YEV3|MOAA_AERPE RecName: Full=Probable molybdenum cofactor biosynthesis protein A
          Length = 355

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 21/102 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL--IEEQWITGEKEGRYCV 89
           CNL            C FC         T+ G       + +  +E+  I GE   R  V
Sbjct: 21  CNL-----------DCFFC----HMEGATESGPMRPGSWSPVLSVEDYDIIGEAASRLGV 65

Query: 90  ----LTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQG 127
               LTGGEPL++ DV  I A+  R  E+++ TNG + P + 
Sbjct: 66  DSFKLTGGEPLIRGDVDKIVAVLARYGEVSMTTNGILLPLKA 107


>gi|330432465|gb|AEC17524.1| conserved hypothetical protein, radical SAM superfamily
           [Gallibacterium anatis UMN179]
          Length = 332

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
           +  CR+C       +   G + +  +  D I +     E      + +GG+PL+  D  L
Sbjct: 117 AVNCRYCFRRHFPYEANPGNKASWRKTLDYIAQHSEIEE-----VIFSGGDPLMAKDREL 171

Query: 104 IQALNKRG 111
              L +  
Sbjct: 172 AWLLEQLN 179


>gi|315231527|ref|YP_004071963.1| arylsulfatase regulatory protein [Thermococcus barophilus MP]
 gi|315184555|gb|ADT84740.1| arylsulfatase regulatory protein [Thermococcus barophilus MP]
          Length = 516

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 28/113 (24%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-L 90
           CNL            C +C   + G + TKGG     ++  ++       + + +  V +
Sbjct: 144 CNL-----------ACPYC---YEGDRKTKGGLLTPKKIDKILTFAKNHEQNDKKPIVSI 189

Query: 91  T--GGEPLL------QVDVPLIQALNKRG----FEIAVETNGTIEPPQGIDWI 131
           +  GGEPLL           L + +   G    +  +  TNG +   + ID I
Sbjct: 190 SFYGGEPLLNWKGCKYTLKRL-KEMKDEGEIRDYSTSFVTNGILINEETIDAI 241


>gi|308380147|ref|ZP_07488858.2| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu011]
 gi|308362436|gb|EFP51287.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu011]
          Length = 325

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 16/89 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C         T       +++  ++ E    G +E     LT
Sbjct: 82  CNLC-----------CDYC--CVSSSPSTPHRELGAERIGRIVGEAARWGVRELF---LT 125

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GGEP L  D+  I A   +     V TNG
Sbjct: 126 GGEPFLLPDIDTIIATCVKQLPTTVLTNG 154


>gi|308375648|ref|ZP_07444630.2| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu007]
 gi|308345582|gb|EFP34433.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu007]
          Length = 326

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 16/89 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C         T       +++  ++ E    G +E     LT
Sbjct: 83  CNLC-----------CDYC--CVSSSPSTPHRELGAERIGRIVGEAARWGVRELF---LT 126

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GGEP L  D+  I A   +     V TNG
Sbjct: 127 GGEPFLLPDIDTIIATCVKQLPTTVLTNG 155


>gi|317131167|ref|YP_004090481.1| Radical SAM domain protein [Ethanoligenens harbinense YUAN-3]
 gi|315469146|gb|ADU25750.1| Radical SAM domain protein [Ethanoligenens harbinense YUAN-3]
          Length = 359

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 16/92 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       R    C             +       + A+L EE    G     + +L 
Sbjct: 68  CNLRCAGCYARADGACN----------TEEACLLPAARWAELFEEAAAMG---ISFILLA 114

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GGEPL +VD +     +    F +   TNGT+
Sbjct: 115 GGEPLTRVDVLEAAARVPSAVFPVL--TNGTL 144


>gi|288555141|ref|YP_003427076.1| hypothetical protein BpOF4_10655 [Bacillus pseudofirmus OF4]
 gi|288546301|gb|ADC50184.1| hypothetical protein BpOF4_10655 [Bacillus pseudofirmus OF4]
          Length = 370

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99
           +C  C   +  +Q        +D L   ++E             +TGGEP+L      Q 
Sbjct: 43  RCEHCAVGYT-LQHKDPTPLPLDLLIMRLDEIPHLKAFS-----ITGGEPMLSMKSVDQY 96

Query: 100 DVPLIQALNKRGFEIAVETNGTIEP 124
            VPL++  ++RG    + +N T++ 
Sbjct: 97  VVPLLKYAHERGVRTQINSNLTLDL 121


>gi|260598903|ref|YP_003211474.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
           turicensis z3032]
 gi|260218080|emb|CBA32831.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
           turicensis z3032]
          Length = 388

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 59/171 (34%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I    +TG++     V+ G
Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG 181

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 239

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N            R  L             + I Y  
Sbjct: 240 APN-DEIRDEIVPINKKYNIETFLAAVRRYL----DKSNANQGRVTIEYVM 285


>gi|184200950|ref|YP_001855157.1| putative oxygen-independent coproporphyrinogen III oxidase [Kocuria
           rhizophila DC2201]
 gi|183581180|dbj|BAG29651.1| putative oxygen-independent coproporphyrinogen III oxidase [Kocuria
           rhizophila DC2201]
          Length = 414

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 17/93 (18%)

Query: 44  SAQCRFCD----TDFVGIQGTKGGRYNVDQLADL-----IEEQWITGEKEGRYCVLTGGE 94
           + +C +CD    T      G     Y+ D  A++     + +   +  +        GG 
Sbjct: 39  AVRCGYCDFNTYTMEQLGDGVSRADYHADAAAEVRFARSVLDAAGSPPRPLHSVFFGGGT 98

Query: 95  PLLQVDVPLIQALNKR--------GFEIAVETN 119
           P L     L   L++         G E+ VE N
Sbjct: 99  PTLLPARELAAMLHQARESFGLAPGAEVTVEAN 131


>gi|220915384|ref|YP_002490688.1| oxygen-independent coproporphyrinogen III oxidase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953238|gb|ACL63622.1| oxygen-independent coproporphyrinogen III oxidase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 379

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
           + +C +CD      +    GRY     A+L            R   L GG P L     L
Sbjct: 15  THRCPYCDFAVTTERPPGAGRYARAVRAELGLRAPAFEGLSLRSVYLGGGTPSLWDADEL 74

Query: 104 ---IQALNKR-----GFEIAVETN 119
              + A+  R     G E+ +E N
Sbjct: 75  RDVLAAVRDRFGLPGGAEVTLEVN 98


>gi|154149819|ref|YP_001403437.1| tRNA-modifying enzyme [Candidatus Methanoregula boonei 6A8]
 gi|153998371|gb|ABS54794.1| Wyosine base formation [Methanoregula boonei 6A8]
          Length = 303

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 70  LADLIEEQWITGEKEGRYCVLT-GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
           L + + ++      + R+  ++  GEP L   +P L+   N  G+   V +NGT  
Sbjct: 108 LGNTVTDERWQEALKPRHVAISLSGEPTLYSRLPELVDLFNANGYTTFVVSNGTNP 163


>gi|21227448|ref|NP_633370.1| tRNA-modifying enzyme [Methanosarcina mazei Go1]
 gi|20905817|gb|AAM31042.1| Fe-S oxidoreductase [Methanosarcina mazei Go1]
          Length = 365

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 72  DLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
           + + E+W+ G +     +   GEP     +P LI+   KRGF   + TNGT+ 
Sbjct: 166 NALRERWLEGNQPNNVAISLSGEPTFYPYLPELIEEYEKRGFTTFLVTNGTVP 218


>gi|271501574|ref|YP_003334600.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech586]
 gi|270345129|gb|ACZ77894.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech586]
          Length = 392

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I    +TG++     V+ G
Sbjct: 126 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG 185

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 186 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 243

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N   +        R  L             + + Y  
Sbjct: 244 APT-DEIRNEIMPINKKYDIETFLAAVRRYL----DKSNANQGRVTVEYVM 289


>gi|251788745|ref|YP_003003466.1| ribosomal RNA large subunit methyltransferase N [Dickeya zeae
           Ech1591]
 gi|247537366|gb|ACT05987.1| radical SAM enzyme, Cfr family [Dickeya zeae Ech1591]
          Length = 392

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I    +TG++     V+ G
Sbjct: 126 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG 185

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 186 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 243

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N   +        R  L             + + Y  
Sbjct: 244 APT-DEIRNEIMPINKKYDIETFLAAVRRYL----DKSNANQGRVTVEYVM 289


>gi|242240158|ref|YP_002988339.1| ribosomal RNA large subunit methyltransferase N [Dickeya dadantii
           Ech703]
 gi|242132215|gb|ACS86517.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech703]
          Length = 393

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I    +TG++     V+ G
Sbjct: 126 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG 185

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 186 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 243

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N   +        R  L             + + Y  
Sbjct: 244 APT-DEIRNEIMPINKKYDIETFLAAVRRYL----DKSNANQGRVTVEYVM 289


>gi|262197456|ref|YP_003268665.1| radical SAM protein [Haliangium ochraceum DSM 14365]
 gi|262080803|gb|ACY16772.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365]
          Length = 474

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 8/84 (9%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV------ 99
            C +C    V + G         Q A  + E+      +  +    GGEPLL        
Sbjct: 107 ACTYCCQAQV-MDGAVMKPETARQSARWLAERARQIGADSLHLSFVGGEPLLHPARIETI 165

Query: 100 DVPLIQALNKR-GFEIAVETNGTI 122
              L   L       +++ TNG +
Sbjct: 166 MSALADELADELPVRMSLITNGAL 189


>gi|225874256|ref|YP_002755715.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196]
 gi|225792393|gb|ACO32483.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196]
          Length = 374

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 15/89 (16%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              C L            CR C      +        N D+  DL+ +    G+    + 
Sbjct: 31  TQACPL-----------ACRHC--RAEAVTMPHPCELNYDESRDLLRQIAAFGD-PKPHL 76

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAV 116
           +LTGG+PL ++D+  LI      G  +++
Sbjct: 77  ILTGGDPLQRLDLFSLIDEARDLGISVSI 105


>gi|218658222|ref|ZP_03514152.1| molybdenum cofactor biosynthesis protein A [Rhizobium etli IE4771]
          Length = 128

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          K     +++L  L       G ++ R   LTGGEPL++ +
Sbjct: 18  DRCDFRCTYC-MAENMTFLPKKDLLTLEELDRLCSAFIAKGVRKIR---LTGGEPLVRKN 73

Query: 101 VP-LIQALNKR---GF-EIAVETNGT 121
           +  L++ L ++   G  E+ + TNG+
Sbjct: 74  IMYLVRRLGEKIGSGLDELTLTTNGS 99


>gi|163734203|ref|ZP_02141644.1| nitrite reductase heme biosynthesis J protein, putative
           [Roseobacter litoralis Och 149]
 gi|161392739|gb|EDQ17067.1| nitrite reductase heme biosynthesis J protein, putative
           [Roseobacter litoralis Och 149]
          Length = 397

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            +       R + +CR C T          G  +  Q   +I++     E +    +L+G
Sbjct: 19  PVVIWNLTRRCNLKCRHCYT--TSSDNIFPGELSTKQALGVIDDL---AEFKIPALILSG 73

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
           GEPL + D+  L Q   K+   +A+ TNGT
Sbjct: 74  GEPLSRGDIYELAQYARKKVRYLALSTNGT 103


>gi|89901088|ref|YP_523559.1| hypothetical protein Rfer_2310 [Rhodoferax ferrireducens T118]
 gi|123397164|sp|Q21W25|RLMN_RHOFD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|89345825|gb|ABD70028.1| conserved hypothetical protein [Rhodoferax ferrireducens T118]
          Length = 382

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 40/124 (32%), Gaps = 36/124 (29%)

Query: 24  AVFC----RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           AVF     R  G        Q   +  CRFC T   G               ++I + W 
Sbjct: 92  AVFIPEEDR--G--TLCISSQAGCAMGCRFCSTGHQGFSRNLKT-------GEIIAQLWF 140

Query: 80  TGEKEGRY----------CVLTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETN 119
                 ++           V+ G GEPL Q    L+ AL       G+      + V T+
Sbjct: 141 AEHFLRKHLQRDERVISNVVMMGMGEPL-QNYAELVPALRAMLDDHGYGLSRRRVTVSTS 199

Query: 120 GTIE 123
           G + 
Sbjct: 200 GVVP 203


>gi|238782658|ref|ZP_04626688.1| pyruvate formate-lyase 3-activating enzyme [Yersinia bercovieri
           ATCC 43970]
 gi|238716318|gb|EEQ08300.1| pyruvate formate-lyase 3-activating enzyme [Yersinia bercovieri
           ATCC 43970]
          Length = 299

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
           G   +++   + +        + G    L+GGEP +Q +V   L+Q   + G   AVE+
Sbjct: 101 GRPIDLEATMETLLRDMPFYRRSGGGVTLSGGEPFMQPEVAAELLQRCYQLGIHTAVES 159


>gi|317484303|ref|ZP_07943226.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Bilophila wadsworthia 3_1_6]
 gi|316924447|gb|EFV45610.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Bilophila wadsworthia 3_1_6]
          Length = 167

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 21/87 (24%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRY 87
             GC              C+ C           GGR  + D +   + +  I      R 
Sbjct: 27  TQGCP-----------HHCKGC--HNPTTHPFDGGRMVSPDWVFADVRKNPIV-----RG 68

Query: 88  CVLTGGEPLLQ--VDVPLIQALNKRGF 112
              +GGEP +Q     PL + L   G+
Sbjct: 69  VTFSGGEPFVQSGKLAPLAERLRAAGY 95


>gi|146306670|ref|YP_001187135.1| molybdenum cofactor synthesis domain-containing protein
           [Pseudomonas mendocina ymp]
 gi|145574871|gb|ABP84403.1| molybdenum cofactor synthesis domain protein [Pseudomonas mendocina
           ymp]
          Length = 322

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 25/165 (15%)

Query: 46  QCRFC--DTDF-VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDV 101
            C +C  D    V  Q           +A LIE   I   +      +TGGEPL+     
Sbjct: 24  ACTYCVPDGKRLVAAQDELSAEAMARGVAYLIEAAGIERLR------ITGGEPLVSTRLD 77

Query: 102 PLIQALNKRGF-EIAVETNGT-------IEPPQGIDWICVS---PKAGCDLKIKGGQELK 150
           P ++ +++ G  +I++ TNG        +    GI  + VS     A     I  G +L 
Sbjct: 78  PFLRQVSQLGLDDISLTTNGQLLERKLPLLVECGIRRLNVSLDTLDASAFRSIARGGDLA 137

Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
            V   +  + E  +     + ++ P+ G  L++   L + YC + 
Sbjct: 138 TVLAGMEAAREAGMKI---KVNMVPLRGQNLDQVLPL-LDYCLER 178


>gi|18312199|ref|NP_558866.1| molybdenum cofactor biosynthesis protein (moaA) [Pyrobaculum
           aerophilum str. IM2]
 gi|24211994|sp|Q8ZYE5|MOAA_PYRAE RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|18159637|gb|AAL63048.1| molybdenum cofactor biosynthesis protein (moaA) [Pyrobaculum
           aerophilum str. IM2]
          Length = 310

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 40  QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
            D  +  C FC   F G    +G     +    +       G  + +   +TGGEPLL+ 
Sbjct: 18  NDECNYNCVFC--HFEGQSRRQGRYLTAEDYGFVTSVFKSLGVADFK---ITGGEPLLRG 72

Query: 100 DVPLIQA-LNKRGFEIAVETNG 120
           D+ LI A + K G  + + TNG
Sbjct: 73  DIDLIVANIAKTGAYVTLTTNG 94


>gi|326392152|ref|ZP_08213626.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325991807|gb|EGD50325.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 460

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 15/67 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV-DQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C++C   +            V +++A+ + +       + +  V 
Sbjct: 92  CNL-----------KCKYC---YANHGDYNQEEAIVTEEIAEKVADFIKLNFPKVKVIVF 137

Query: 91  TGGEPLL 97
            GGEPLL
Sbjct: 138 FGGEPLL 144


>gi|325261046|ref|ZP_08127784.1| putative radical SAM domain protein [Clostridium sp. D5]
 gi|324032500|gb|EGB93777.1| putative radical SAM domain protein [Clostridium sp. D5]
          Length = 312

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETN 119
             Y VD L  +++  +     EG     +GG+PL+  D  L   L    K     A+ET+
Sbjct: 111 KEYTVDGLMKILKRDFNNWGSEGG-VTFSGGDPLMHHDF-LYDVLMECKKAHIHTAIETS 168

Query: 120 G 120
           G
Sbjct: 169 G 169


>gi|283786133|ref|YP_003365998.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
 gi|282949587|emb|CBG89205.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
          Length = 388

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 181

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 239

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N            R  L+            + I Y  
Sbjct: 240 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 285


>gi|150015587|ref|YP_001307841.1| glycyl-radical activating family protein [Clostridium beijerinckii
           NCIMB 8052]
 gi|149902052|gb|ABR32885.1| glycyl-radical enzyme activating protein family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 300

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 59  GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAV 116
             +G    +  + + + +  +  E+      L+GGE L+  +    L++ L ++     +
Sbjct: 102 SAEGEFLTLSHVMNEVMKDEMFYEESNGGVTLSGGEVLMHHEFASQLLKVLKEKNIHTTI 161

Query: 117 ETNG 120
           ET G
Sbjct: 162 ETTG 165


>gi|317484667|ref|ZP_07943568.1| radical SAM superfamily protein [Bilophila wadsworthia 3_1_6]
 gi|316924023|gb|EFV45208.1| radical SAM superfamily protein [Bilophila wadsworthia 3_1_6]
          Length = 397

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           C L +       +  C+ C            G  + ++   LI+     G       + T
Sbjct: 50  CRLIAWEVTRSCNLACKHC--RAEAHPEPYPGELSTEEAKALIDTFPSVG---NPIIIFT 104

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           GG+P+++ DV  LI     +G    +  NGT+  P+
Sbjct: 105 GGDPMIRPDVYELIAYAGSKGLRCVMSPNGTLITPE 140


>gi|311070188|ref|YP_003975111.1| molybdenum cofactor biosynthesis protein A [Bacillus atrophaeus
           1942]
 gi|310870705|gb|ADP34180.1| molybdenum cofactor biosynthesis protein A [Bacillus atrophaeus
           1942]
          Length = 341

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 10/55 (18%)

Query: 90  LTGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPP-------QGIDWICVS 134
           LTGGEPL++ D+P LI+ L +  G   IA+ TNG++ P         G+  + VS
Sbjct: 76  LTGGEPLMRKDMPELIKKLARIPGVRDIAMTTNGSLLPVYAEKLKNAGLHRVTVS 130


>gi|296132280|ref|YP_003639527.1| molybdenum cofactor biosynthesis protein A [Thermincola sp. JR]
 gi|296030858|gb|ADG81626.1| molybdenum cofactor biosynthesis protein A [Thermincola potens JR]
          Length = 326

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 6/95 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +C +C          +    +++++  +I+     G ++ R   LTG
Sbjct: 10  NYLRVSVTDRCNYRCVYCMPAEGVPMHCRDEILSLEEILKVIKSSTKLGIRKIR---LTG 66

Query: 93  GEPLLQVD-VPLIQALNKRGF--EIAVETNGTIEP 124
           GEPL++   + L+Q + +     +IA+ TNG + P
Sbjct: 67  GEPLVRKGIINLVQGIARIPQIDDIALTTNGALLP 101


>gi|206895115|ref|YP_002246513.1| tungsten-containing aldehyde ferredoxin oxidoreductase
           cofactor-modifying protein [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206737732|gb|ACI16810.1| tungsten-containing aldehyde ferredoxin oxidoreductase
           cofactor-modifying protein [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 356

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 18/93 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C         T+    +   +  +++E            ++ 
Sbjct: 30  CNL-----------ACAMC-FRHTYEDHTR-ALMDEKTVQKMLQEVV---NSPAEEVIIG 73

Query: 92  G-GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           G GEPL+      +++ L      + + TNGT+
Sbjct: 74  GIGEPLMHPLWKNVVKELKNAYKRVTITTNGTL 106


>gi|217973237|ref|YP_002357988.1| Radical SAM domain-containing protein [Shewanella baltica OS223]
 gi|217498372|gb|ACK46565.1| Radical SAM domain protein [Shewanella baltica OS223]
          Length = 298

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 13/103 (12%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCV 89
           NL +          C  CDT           +   Y V+++  ++  Q            
Sbjct: 72  NLNNKPRIQWDKNCCSQCDTCLAVCPKQASPKVTHYTVEEILGILHRQR----HFINGIT 127

Query: 90  LTGGEPLLQV--DVPLIQALNK----RGFEIAVETNGTIEPPQ 126
           ++GGE  LQ+   + L + +            ++TNG++    
Sbjct: 128 VSGGEASLQLPFIIELFKGIKATESLSHLTCMLDTNGSLSLTG 170


>gi|14520911|ref|NP_126386.1| molybdenum cofactor biosynthesis MoaA [Pyrococcus abyssi GE5]
 gi|5458128|emb|CAB49617.1| moaA-like intein containing molybdenum cofactor biosynthesis moaA
           homolog [Pyrococcus abyssi GE5]
          Length = 1042

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF 112
           F   +G       ++Q+  ++                TGGEP L+ D+  +I+   + G+
Sbjct: 613 FYAREGEPIYEPTLEQIRMMLRNAKKEHPIGANAVQFTGGEPTLRDDLIEIIKIAKEEGY 672

Query: 113 -EIAVETNG 120
             + + T+G
Sbjct: 673 DHVQLNTDG 681


>gi|325294454|ref|YP_004280968.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325064902|gb|ADY72909.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 222

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 87  YCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE 123
             +++GGEP L+  +   ++ +   GF + V+TNGT  
Sbjct: 75  LIIISGGEPTLEKKLEEGLRFIRSLGFSVRVDTNGTNP 112


>gi|325262819|ref|ZP_08129555.1| molybdenum cofactor biosynthesis protein A [Clostridium sp. D5]
 gi|324031913|gb|EGB93192.1| molybdenum cofactor biosynthesis protein A [Clostridium sp. D5]
          Length = 306

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 8/113 (7%)

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNK-RGF-EIAVETNGTI 122
            +   A+++    I  ++      LTGGEPL++  +  L+  L +  G  E+ + TNG +
Sbjct: 13  EILTYAEIVRVCRICADEGISRIKLTGGEPLVRKGISSLLYELRQINGIEEVTLTTNGVL 72

Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVNVSPENYIGFDFERFSLQ 174
              + ID +    KAG D        L +  + Q+    E     +    +LQ
Sbjct: 73  -LAEQIDSLA---KAGLDAVNISLDTLEREQYAQITRRDELERALEGLEAALQ 121


>gi|299132741|ref|ZP_07025936.1| Radical SAM domain protein [Afipia sp. 1NLS2]
 gi|298592878|gb|EFI53078.1| Radical SAM domain protein [Afipia sp. 1NLS2]
          Length = 473

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 18/95 (18%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              CNL  G         C      ++           ++++   I E            
Sbjct: 73  TQRCNLDCG--------AC------YLSEHSEAVKDLPLEEVYRRI-ELIRETYGSDVDV 117

Query: 89  VLTGGEPLLQVDVPLI---QALNKRGFEIAVETNG 120
            +TGG+P L+    LI   + L + G   A+ TNG
Sbjct: 118 QVTGGDPTLRKRDELIAIVRRLREIGMRPALFTNG 152


>gi|294637694|ref|ZP_06715971.1| radical SAM enzyme, Cfr family [Edwardsiella tarda ATCC 23685]
 gi|291089124|gb|EFE21685.1| radical SAM enzyme, Cfr family [Edwardsiella tarda ATCC 23685]
          Length = 411

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I  Q +TG +     V+ G
Sbjct: 145 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAQKVTGNRPITNVVMMG 204

Query: 93  -GEPLLQ--VDVPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL     +P ++  L+  GF      + + T+G +     + D I V
Sbjct: 205 MGEPLLNMTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 255


>gi|284928671|ref|YP_003421193.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [cyanobacterium UCYN-A]
 gi|284809130|gb|ADB94835.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [cyanobacterium UCYN-A]
          Length = 338

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
                 + GGEPLL   +  +++ L KR   + + TN  +   + +     SP     + 
Sbjct: 72  GAPVVSIPGGEPLLHPQIDEIVEGLVKRKKFVYLCTN-ALLLEKSLHKFKPSPYFAFSVH 130

Query: 143 IKGGQE 148
           + G +E
Sbjct: 131 LDGLEE 136


>gi|332180111|gb|AEE15799.1| Radical SAM domain protein [Treponema brennaborense DSM 12168]
          Length = 418

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 20/76 (26%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN W           C F D         K  + ++++L D I +    G         T
Sbjct: 95  CNCW----------HCSFAD-------RIKKNKLSMEELKDAIRQMQDLG---TSMIGFT 134

Query: 92  GGEPLLQVDVPLIQAL 107
           GGEPLL+ D+P I +L
Sbjct: 135 GGEPLLRKDMPEILSL 150


>gi|326391536|ref|ZP_08213068.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325992417|gb|EGD50877.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 441

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 23/112 (20%)

Query: 27  CRFSGCNLWSGREQDR-------LSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
            RF   NLW  R  D+        +  C F C   +   + ++   +  +++   I E  
Sbjct: 76  LRF---NLWRSRFNDKNLGLTIAPTLGCNFAC--VYCYEKDSQKNVFMSEEVQRKIIEYI 130

Query: 79  ITGEKEGRYCVLT--GGEPLLQVDV-----PLIQALNKRG---FEIAVETNG 120
               K  +   +T  GGEPLL  D+       I  L       +  ++ TNG
Sbjct: 131 KRQIKYLQSVNITWYGGEPLLAFDIVKDMSEKIIKLCDENEVIYGASIVTNG 182


>gi|311106145|ref|YP_003978998.1| molybdenum cofactor biosynthesis protein A 1 [Achromobacter
           xylosoxidans A8]
 gi|310760834|gb|ADP16283.1| molybdenum cofactor biosynthesis protein A 1 [Achromobacter
           xylosoxidans A8]
          Length = 332

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 8/85 (9%)

Query: 41  DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR   +C +C   DF G + T       +++A L+      G  + R   LTGGEPLL+ 
Sbjct: 27  DRCDLRCSYCLPKDFKGFE-TPANWLRHEEMARLVGLFVGLGVSKVR---LTGGEPLLRR 82

Query: 100 DVPLIQALNKR--GFE-IAVETNGT 121
            +  +  +     G + ++V TNGT
Sbjct: 83  GLAGLAGVIAAMPGLKDLSVSTNGT 107


>gi|303233487|ref|ZP_07320150.1| radical SAM domain protein [Finegoldia magna BVS033A4]
 gi|302495387|gb|EFL55130.1| radical SAM domain protein [Finegoldia magna BVS033A4]
          Length = 729

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 33/105 (31%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL- 90
           CNL           +C +C   ++  + +   + + D     I+             +L 
Sbjct: 33  CNL-----------RCSYC---YITHKSSN-KKMSFDVAKRFIDYVLSDKIVRPNGVILD 77

Query: 91  -TGGEPLLQVDVPLIQALNKR--------------GFEIAVETNG 120
             GGEPLL  ++ LI  +                  + I + TNG
Sbjct: 78  FIGGEPLL--EIKLIDQICDYFKLKTYILNDEWYWDYRINITTNG 120


>gi|302543321|ref|ZP_07295663.1| radical SAM [Streptomyces hygroscopicus ATCC 53653]
 gi|302460939|gb|EFL24032.1| radical SAM [Streptomyces himastatinicus ATCC 53653]
          Length = 393

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 22/88 (25%), Gaps = 20/88 (22%)

Query: 20 AGRVAVFCRF----------SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
          AG      R           S CNL          A   + D                ++
Sbjct: 7  AGVP----RLPFREFLLKVHSRCNLACDHCYVYQGADQSWRDQPRA------MAWPTAER 56

Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLL 97
              I +            +L GGEPLL
Sbjct: 57 ACRRIADHAAAHRLPSVRVLLHGGEPLL 84


>gi|288940317|ref|YP_003442557.1| molybdenum cofactor biosynthesis protein A [Allochromatium vinosum
           DSM 180]
 gi|288895689|gb|ADC61525.1| molybdenum cofactor biosynthesis protein A [Allochromatium vinosum
           DSM 180]
          Length = 328

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 41  DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR   +C +C    F G +       + +++  ++      G +  R   LTGGEPL++ 
Sbjct: 23  DRCDLRCGYCLPKGFKGFE-EPAHWLSFEEIERVVAAFTALGVRRVR---LTGGEPLMRR 78

Query: 100 -DVPLIQALNK 109
               L   L+ 
Sbjct: 79  GLTELAARLSA 89


>gi|212704636|ref|ZP_03312764.1| hypothetical protein DESPIG_02699 [Desulfovibrio piger ATCC 29098]
 gi|212672035|gb|EEB32518.1| hypothetical protein DESPIG_02699 [Desulfovibrio piger ATCC 29098]
          Length = 335

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C       +        V +  ++I    I          LTGGEP  +  
Sbjct: 23  DRCNLRCLYC---HSNARHQCIPHEKVLRYEEMIRLVQIVRGMGVGKVRLTGGEPFARKG 79

Query: 101 -VPLIQALNKR--GFEIAVETNGTI 122
               +  L +R    +I + TNGT+
Sbjct: 80  CDDFLLRLRQRFDDLDIRITTNGTL 104


>gi|170782849|ref|YP_001711183.1| molybdenum cofactor biosynthesis protein A [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157419|emb|CAQ02608.1| molybdenum cofactor biosynthesis protein A [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 361

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 19/89 (21%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVD----QLADLIEEQWITGEKE--GRYCVLTGGE 94
           DR + +C +C          +G  +  D    QLA+ IE     G ++   R    TGGE
Sbjct: 44  DRCNLRCTYC-------MPAEGLPFTPDRQALQLAE-IERLVRIGTRDLGVRQVRFTGGE 95

Query: 95  PLLQVDV----PLIQALNKRGFEIAVETN 119
           PLL+ D+        AL  R  EI++ TN
Sbjct: 96  PLLRRDLIEIIAACAALPDRP-EISLTTN 123


>gi|168209976|ref|ZP_02635601.1| 4Fe-4S binding domain protein/radical SAM domain protein
           [Clostridium perfringens B str. ATCC 3626]
 gi|170711934|gb|EDT24116.1| 4Fe-4S binding domain protein/radical SAM domain protein
           [Clostridium perfringens B str. ATCC 3626]
          Length = 273

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 45/164 (27%)

Query: 25  VFCRFSGCNLWS------------------------------GREQDRLSAQCRFCD--T 52
           +F  F GCN                                   +      +C  CD   
Sbjct: 22  IF--FQGCNFKCLYCHNPETINKCISCGKCVENCEVGALSISDGKVIWDEEECISCDKCI 79

Query: 53  DFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNK 109
                  +     Y+V++L   IE+         R   ++GGE  L     + L + + K
Sbjct: 80  KLCEHMSSPKLKEYSVEELVKKIEK----DSFFIRGITVSGGECTLNSEFLIKLFREVKK 135

Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
            G    V+TNG  +    +  I ++ K   D+K     E + ++
Sbjct: 136 LGLTCFVDTNGNTKLDDEL--INLTDKFMLDVK--SIDEKENIW 175


>gi|148273530|ref|YP_001223091.1| molybdenum cofactor biosynthesis protein A [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831460|emb|CAN02420.1| putative molybdenum cofactor biosynthesis protein [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 352

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 19/89 (21%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVD----QLADLIEEQWITGEKE--GRYCVLTGGE 94
           DR + +C +C          +G  +  D    QLA+ IE     G ++   R    TGGE
Sbjct: 35  DRCNLRCTYC-------MPAEGLPFTPDRQALQLAE-IERLVRIGTRDLGVRQVRFTGGE 86

Query: 95  PLLQVDV----PLIQALNKRGFEIAVETN 119
           PLL+ D+        AL  R  EI++ TN
Sbjct: 87  PLLRRDLIEIIAACAALPDRP-EISLTTN 114


>gi|121612497|ref|YP_999886.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|157414478|ref|YP_001481734.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|167004852|ref|ZP_02270610.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|218561842|ref|YP_002343621.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|24212020|sp|Q9PIW6|MOAA_CAMJE RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|166217244|sp|A1VXP5|MOAA_CAMJJ RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|172047012|sp|A8FJX0|MOAA_CAMJ8 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|87250305|gb|EAQ73263.1| molybdenum cofactor biosynthesis protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|112359548|emb|CAL34332.1| putative molybdenum cofactor biosynthesis protein A [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|157385442|gb|ABV51757.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|284925454|gb|ADC27806.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni
           subsp. jejuni IA3902]
 gi|307747121|gb|ADN90391.1| Molybdenum cofactor biosynthesis protein A [Campylobacter jejuni
           subsp. jejuni M1]
          Length = 320

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N        R + +C +C          K    + ++L   ++     G ++ R   +TG
Sbjct: 11  NYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLSFEELFLFVKAAIDEGIEKIR---ITG 67

Query: 93  GEPLLQVDVP-LIQALNK--RGFEIAVETNG 120
           GEPLL+ D+   I+ ++      ++A+ TNG
Sbjct: 68  GEPLLRKDLSIFIKMISDYKSDIDLAITTNG 98


>gi|240102652|ref|YP_002958961.1| Radical-activating enzyme, pyruvate formate-lyase related
           [Thermococcus gammatolerans EJ3]
 gi|239910206|gb|ACS33097.1| Radical-activating enzyme, pyruvate formate-lyase related
           [Thermococcus gammatolerans EJ3]
          Length = 361

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 15/105 (14%)

Query: 31  GCNLWSGREQDRL------SAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           GC L    E+  L         C +C  + +            V  + D+IEE  I   K
Sbjct: 18  GCQLCVRGEKLVLFTTGICPRNCFYCPLSPWRREDVVYANERPVKSVDDIIEEALIQEAK 77

Query: 84  EGRYCVLTGGEPLLQVDVPL--IQALNK---RGFEIAVETNGTIE 123
                 +TGG+PL ++D  +  I+AL +   R F + + T G + 
Sbjct: 78  GAG---VTGGDPLARLDRTVSYIRALKEAFGRKFHVHLYTTGALA 119


>gi|229157174|ref|ZP_04285254.1| Anaerobic ribonucleoside-triphosphate reductase activating
          protein [Bacillus cereus ATCC 4342]
 gi|228626238|gb|EEK82985.1| Anaerobic ribonucleoside-triphosphate reductase activating
          protein [Bacillus cereus ATCC 4342]
          Length = 147

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 25/86 (29%)

Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFCDTDFVGIQGTKGGRYNVDQLADL 73
          GEG       VF  F+GC        +  S   C              G    ++++ + 
Sbjct: 11 GEGLRT---VVF--FAGCPHRCFGCHNPKSWNIC-------------NGIEMTLEEIVEE 52

Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQV 99
          I                +GG+P LQ 
Sbjct: 53 I------ASNPLTDVTFSGGDPFLQA 72


>gi|209524542|ref|ZP_03273090.1| Radical SAM domain protein [Arthrospira maxima CS-328]
 gi|209495000|gb|EDZ95307.1| Radical SAM domain protein [Arthrospira maxima CS-328]
          Length = 355

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 7/66 (10%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
           + +D++ D I    +      +   L GGEPLL  ++  +I+ L + G  + V TNG + 
Sbjct: 53  HELDRIVDQISSIDV------KVVFLAGGEPLLIRNLEYVIRQLAQTGVSVFVNTNGILL 106

Query: 124 PPQGID 129
             + ID
Sbjct: 107 TEKRID 112


>gi|149182979|ref|ZP_01861435.1| hypothetical protein BSG1_13476 [Bacillus sp. SG-1]
 gi|148849316|gb|EDL63510.1| hypothetical protein BSG1_13476 [Bacillus sp. SG-1]
          Length = 375

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 12/84 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        ++ +   ++E         R   +TGGEP++        
Sbjct: 46  RCNHCAVGYT-LQNKDPEALPMELIFRRLDEV-----SHLRTISITGGEPMMSKKSVENH 99

Query: 101 -VPLIQALNKRGFEIAVETNGTIE 123
            +PL++  + RG +  + +N T+ 
Sbjct: 100 VLPLLKYAHSRGVKTQINSNLTLP 123


>gi|119872338|ref|YP_930345.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM
           4184]
 gi|119673746|gb|ABL88002.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 373

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 16/73 (21%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F  F+GCN            +C +C    +      G     + LA +       G K
Sbjct: 153 TIF--FTGCNF-----------RCVYCQNWDISQYPEAGVEVTAEALAAIQVRLREEGAK 199

Query: 84  EGRYCVLTGGEPL 96
              +    GGEP 
Sbjct: 200 NINWV---GGEPT 209


>gi|121997762|ref|YP_001002549.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Halorhodospira halophila SL1]
 gi|121589167|gb|ABM61747.1| coproporphyrinogen III oxidase, anaerobic [Halorhodospira halophila
           SL1]
          Length = 408

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 9/96 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91
            L           +C +CD +   ++G    R  VD L   +  Q           V + 
Sbjct: 11  PLAVYIHLPWCLQRCGYCDFNAHALRGELPARAYVDALGRELRRQAPAALGRRVTSVFIG 70

Query: 92  GGEPLLQVDVP---LIQAL-----NKRGFEIAVETN 119
           GG P L    P   L+  L      + G EI +E N
Sbjct: 71  GGTPSLFPPGPIGELLDTLDAVLGLESGAEITLEAN 106


>gi|313673007|ref|YP_004051118.1| radical sam domain protein [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939763|gb|ADR18955.1| Radical SAM domain protein [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 354

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 25/115 (21%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            S CNL     +                   +  G++ +++   L+++     E      
Sbjct: 15  TSKCNLKCVHCRSSSDIH-------------SPEGKFTLERCYKLMDD---ISEFAKPVI 58

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ--------GIDWICVS 134
           VL+GGEPLL+ D+  +     ++GF + + TNG +   +        GI  + +S
Sbjct: 59  VLSGGEPLLRKDLFDIANYGTEKGFRMCMATNGVLVNDEICRKIKESGIKIVSLS 113


>gi|260887953|ref|ZP_05899216.1| molybdenum cofactor biosynthesis protein A [Selenomonas sputigena
           ATCC 35185]
 gi|260862306|gb|EEX76806.1| molybdenum cofactor biosynthesis protein A [Selenomonas sputigena
           ATCC 35185]
          Length = 301

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNK-RGFE-IAVETNGTI 122
           ++    +++       +   R   LTGGEPLL+   V L++ +    G E +A+ TNG +
Sbjct: 13  DILSFEEIVRVVRALAQLGIRKVRLTGGEPLLRRGVVDLVREIKAVEGIERVALTTNGVL 72


>gi|210621800|ref|ZP_03292829.1| hypothetical protein CLOHIR_00774 [Clostridium hiranonis DSM 13275]
 gi|210154564|gb|EEA85570.1| hypothetical protein CLOHIR_00774 [Clostridium hiranonis DSM 13275]
          Length = 454

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 36/108 (33%)

Query: 31  GCNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRY--NVDQLADLIEEQWITGEKEG 85
           GCN+      D  SA    C  C           G +   +++ +  +I +    G    
Sbjct: 104 GCNVPWAILLDPTSACNMHCTGC------WAAEYGNKLNLSLETIDSIIRQGKEMGTYMY 157

Query: 86  RYCVLTGGEPL-----------LQVDVPLIQALNKRGFEIAVETNGTI 122
              + TGGEPL           +  D   +             TNG++
Sbjct: 158 ---IYTGGEPLVRKDDLMKICEMHPDCAFLAF-----------TNGSL 191


>gi|169831502|ref|YP_001717484.1| radical SAM domain-containing protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638346|gb|ACA59852.1| Radical SAM domain protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 334

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 18/96 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C   +           +  +   LI+E         +  + +
Sbjct: 11  CNL-----------ACAHC---YRDAGQKAEDELSTAEGKALIDE---IAGAGFKIMIFS 53

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           GGEPL++ D+  LI     RG    + +NGT+  P+
Sbjct: 54  GGEPLMRPDIYDLIAYAASRGLRPVLGSNGTLITPE 89


>gi|85813796|emb|CAF31849.1| putative oxidoreductase [Streptomyces hygroscopicus subsp.
           hygroscopicus]
          Length = 343

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 18/93 (19%)

Query: 78  WITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGF--EIAVETNGTIEPPQGID-WICV 133
            +      R+  + GGEPLL    VPL+  +   G      V TNG + P    D W  V
Sbjct: 54  LLARSFRARFVKVLGGEPLLHPELVPLLNLVRDSGIAPHTTVCTNGLLLPRMRDDFWAAV 113

Query: 134 SPKAGCDLKIKGGQELKL-VFPQVNVSPENYIG 165
                         E+++ V+P   +  E   G
Sbjct: 114 -------------DEVEISVYPDRELPEEKMAG 133


>gi|146297294|ref|YP_001181065.1| radical SAM domain-containing protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410870|gb|ABP67874.1| Radical SAM domain protein [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 347

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C               ++  + D  +   I  + E     + 
Sbjct: 19  CNL-----------RCNYC----SNDDNFYASSLSL-SIEDCKKVIDILHKTEVFRINIE 62

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEP L+ D+  +I  LN++G+   + TNGT+
Sbjct: 63  GGEPFLRNDLLEIIGYLNEKGYIPKITTNGTL 94


>gi|302388859|ref|YP_003824680.1| GTP cyclohydrolase subunit MoaA [Thermosediminibacter oceani DSM
           16646]
 gi|302199487|gb|ADL07057.1| GTP cyclohydrolase subunit MoaA [Thermosediminibacter oceani DSM
           16646]
          Length = 324

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 16/135 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C  +   +  T       +++A  +E     G    R   +TGGEPL++  
Sbjct: 18  DRCNFRCIYCMPEGGVMPKTCADILRFEEIARFLEAIVPLGISTVR---ITGGEPLVRKG 74

Query: 101 VP-LIQALNKRG--FEIAVETNGTIEPPQGIDW---------ICV-SPKAGCDLKIKGGQ 147
           +   ++ + +     +IA+ TNG++      D          I + S +     ++  G 
Sbjct: 75  IADFVRMVRRIPGVKDIAMTTNGSLLAGMAADLKSAGLNRVNISLDSLRPERFGRVTRGG 134

Query: 148 ELKLVFPQVNVSPEN 162
           +LK V   ++ + EN
Sbjct: 135 DLKSVLKGIDAALEN 149


>gi|294996631|ref|ZP_06802322.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           210]
          Length = 331

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 16/89 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C         T       +++  ++ E    G +E     LT
Sbjct: 88  CNLC-----------CDYC--CVSSSPSTPHRELGAERIGRIVGEAARWGVRELF---LT 131

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GGEP L  D+  I A   +     V TNG
Sbjct: 132 GGEPFLLPDIDTIIATCVKQLPTTVLTNG 160


>gi|215445868|ref|ZP_03432620.1| MoaA-related protein [Mycobacterium tuberculosis T85]
 gi|289757792|ref|ZP_06517170.1| molybdopterin biosynthesis protein MoeX [Mycobacterium tuberculosis
           T85]
 gi|289713356|gb|EFD77368.1| molybdopterin biosynthesis protein MoeX [Mycobacterium tuberculosis
           T85]
 gi|326903295|gb|EGE50228.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           W-148]
          Length = 330

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 16/89 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C         T       +++  ++ E    G +E     LT
Sbjct: 87  CNLC-----------CDYC--CVSSSPSTPHRELGAERIGRIVGEAARWGVRELF---LT 130

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GGEP L  D+  I A   +     V TNG
Sbjct: 131 GGEPFLLPDIDTIIATCVKQLPTTVLTNG 159


>gi|312623527|ref|YP_004025140.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203994|gb|ADQ47321.1| Radical SAM domain protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 194

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 29/104 (27%)

Query: 4   YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           Y +     TL G G   G         GC           S +C+ C +     +  K  
Sbjct: 11  YPV----YTL-GPGKRVGIW-----LQGC-----------SIRCKGCMSSHTW-EFDKSR 48

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
              ++Q+A++++          +   ++GGEP  Q  VPL+  L
Sbjct: 49  AIKIEQVANVLKSFG------CKRLTISGGEPFDQ-HVPLLILL 85


>gi|149186315|ref|ZP_01864628.1| molybdenum cofactor biosynthesis protein A [Erythrobacter sp.
           SD-21]
 gi|148829904|gb|EDL48342.1| molybdenum cofactor biosynthesis protein A [Erythrobacter sp.
           SD-21]
          Length = 345

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 15/105 (14%)

Query: 41  DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C    FV   G      + ++L   +      G  + R   LTGGEP ++ 
Sbjct: 39  DRCNFRCSYCLPNGFVKQDGLPPE-LSREELRRAVSAFARLGLWKLR---LTGGEPTVRR 94

Query: 100 DVPLIQALNK--RGF-EIAVETNG-------TIEPPQGIDWICVS 134
           D   I        G   +A+ TNG       T     G+D + VS
Sbjct: 95  DFTEIARYLASVEGIRRVAMTTNGYRLAREATAWRAAGVDAVNVS 139


>gi|90418074|ref|ZP_01225986.1| molybdenum cofactor biosynthesis protein [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337746|gb|EAS51397.1| molybdenum cofactor biosynthesis protein [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 352

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+     K     +++L  L       G ++ R   LTGGEPL+
Sbjct: 41  DRCDFRCVYCMAEDMTFL----PKRDLLTLEELDRLSSAFIAKGVRKLR---LTGGEPLV 93

Query: 98  QVDV-PLIQALNKRGFEIAVE-----TNGT 121
           + ++  L+++L++     A+E     TNG+
Sbjct: 94  RKNIMHLVRSLSRHLESGALEELTLTTNGS 123


>gi|21672314|ref|NP_660381.1| hypothetical protein BUsg020 [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|22654299|sp|Q44634|Y020_BUCAP RecName: Full=Uncharacterized KamA family protein BUsg_020
 gi|21622913|gb|AAM67592.1| hypothetical 38.7 kDa protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 337

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 40  QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           +   +  CR+C       +  KG + N  Q+   I +     E      +L+GG+PL+  
Sbjct: 118 KTNCAINCRYCFRKHFPYEKNKGNKKNWIQILHYISQNIELNE-----VILSGGDPLMAK 172

Query: 100 DVPLI 104
           D  L+
Sbjct: 173 DHELL 177


>gi|300789683|ref|YP_003769974.1| pyrroloquinoline quinone biosynthesis protein E [Amycolatopsis
           mediterranei U32]
 gi|299799197|gb|ADJ49572.1| pyrroloquinoline quinone biosynthesis protein E [Amycolatopsis
           mediterranei U32]
          Length = 354

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R    C +C          +    +      ++ +    G  +      +GGEPLL+ D+
Sbjct: 16  RCPLHCPYCSNPVELT--ARDAELSTSDWLSVLSQARELGVLQVHM---SGGEPLLRPDL 70

Query: 102 P-LIQALNKRGFEIAVETNG 120
           P L+   +  G  + + T+G
Sbjct: 71  PELVAHASGLGCYVNLVTSG 90


>gi|294791611|ref|ZP_06756759.1| radical SAM domain protein [Veillonella sp. 6_1_27]
 gi|294456841|gb|EFG25203.1| radical SAM domain protein [Veillonella sp. 6_1_27]
          Length = 463

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 26/112 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ--LADLIEEQWITGEKEGRYCV 89
           CNL            C++C   F       G +  +    +A    +  I      ++C 
Sbjct: 101 CNL-----------ACKYC---FASQGDYGGVKRELMSFDVAKRAVDFLIKMSGSRQHCE 146

Query: 90  LT--GGEPLLQVD--------VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           +   GGEPLL  D        +  IQ  + + F++ + TNG +     ID++
Sbjct: 147 IDFFGGEPLLNWDVVKQTVEYIESIQEKHNKIFKLTLTTNGMLLTQDKIDYV 198


>gi|238921042|ref|YP_002934557.1| ribosomal RNA large subunit methyltransferase N [Edwardsiella
           ictaluri 93-146]
 gi|259491987|sp|C5BET4|RLMN_EDWI9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|238870611|gb|ACR70322.1| radical SAM enzyme, Cfr family [Edwardsiella ictaluri 93-146]
          Length = 390

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I  Q +TG +     V+ G
Sbjct: 124 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAQKVTGNRPITNVVMMG 183

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   +P ++  L+  GF      + + T+G +     + D I V
Sbjct: 184 MGEPLLNLTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDTIDV 234


>gi|225016179|ref|ZP_03705383.1| hypothetical protein CLOSTMETH_00094 [Clostridium methylpentosum
           DSM 5476]
 gi|224951052|gb|EEG32261.1| hypothetical protein CLOSTMETH_00094 [Clostridium methylpentosum
           DSM 5476]
          Length = 370

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 15/98 (15%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL+      R +  C  C       +         ++   +  +    G        L 
Sbjct: 77  CNLFCKGCYARANGTC--C-------EERSDPLLTAEEWDSIFCQASELGIGFHL---LA 124

Query: 92  GGEPLLQVDVPLIQALN-KRGFEIAVETNGTIEPPQGI 128
           GGEPLL+ +V L  A + +  F I   TNGT+  P  +
Sbjct: 125 GGEPLLRREVLLRAAQHPETIFPIF--TNGTMLDPSCL 160


>gi|15608819|ref|NP_216197.1| molybdopterin biosynthesis protein MoeX [Mycobacterium tuberculosis
           H37Rv]
 gi|31792867|ref|NP_855360.1| molybdopterin biosynthesis protein MoeX [Mycobacterium bovis
           AF2122/97]
 gi|121637588|ref|YP_977811.1| putative molybdopterin biosynthesis protein moeX [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|148661478|ref|YP_001283001.1| molybdopterin biosynthesis protein MoeX [Mycobacterium tuberculosis
           H37Ra]
 gi|148822889|ref|YP_001287643.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           F11]
 gi|167969201|ref|ZP_02551478.1| MoaA-related protein [Mycobacterium tuberculosis H37Ra]
 gi|215404016|ref|ZP_03416197.1| MoaA-related protein [Mycobacterium tuberculosis 02_1987]
 gi|215411328|ref|ZP_03420136.1| MoaA-related protein [Mycobacterium tuberculosis 94_M4241A]
 gi|215427004|ref|ZP_03424923.1| MoaA-related protein [Mycobacterium tuberculosis T92]
 gi|215430573|ref|ZP_03428492.1| MoaA-related protein [Mycobacterium tuberculosis EAS054]
 gi|219557602|ref|ZP_03536678.1| MoaA-related protein [Mycobacterium tuberculosis T17]
 gi|224990063|ref|YP_002644750.1| putative molybdopterin biosynthesis protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|254364522|ref|ZP_04980568.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           str. Haarlem]
 gi|254550690|ref|ZP_05141137.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289443138|ref|ZP_06432882.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           T46]
 gi|289447293|ref|ZP_06437037.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           CPHL_A]
 gi|289554545|ref|ZP_06443755.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           KZN 605]
 gi|289569728|ref|ZP_06449955.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           T17]
 gi|289574349|ref|ZP_06454576.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           K85]
 gi|289745882|ref|ZP_06505260.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           02_1987]
 gi|289750237|ref|ZP_06509615.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           T92]
 gi|289753772|ref|ZP_06513150.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           EAS054]
 gi|298525180|ref|ZP_07012589.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           94_M4241A]
 gi|2326724|emb|CAB10938.1| POSSIBLE MOLYBDOPTERIN BIOSYNTHESIS PROTEIN MOEX [Mycobacterium
           tuberculosis H37Rv]
 gi|31618457|emb|CAD96375.1| POSSIBLE MOLYBDOPTERIN BIOSYNTHESIS PROTEIN MOEX [Mycobacterium
           bovis AF2122/97]
 gi|121493235|emb|CAL71706.1| Possible molybdopterin biosynthesis protein moeX [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|134150036|gb|EBA42081.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           str. Haarlem]
 gi|148505630|gb|ABQ73439.1| molybdopterin biosynthesis protein MoeX [Mycobacterium tuberculosis
           H37Ra]
 gi|148721416|gb|ABR06041.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           F11]
 gi|224773176|dbj|BAH25982.1| putative molybdopterin biosynthesis protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|289416057|gb|EFD13297.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           T46]
 gi|289420251|gb|EFD17452.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           CPHL_A]
 gi|289439177|gb|EFD21670.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           KZN 605]
 gi|289538780|gb|EFD43358.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           K85]
 gi|289543482|gb|EFD47130.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           T17]
 gi|289686410|gb|EFD53898.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           02_1987]
 gi|289690824|gb|EFD58253.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           T92]
 gi|289694359|gb|EFD61788.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           EAS054]
 gi|298494974|gb|EFI30268.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           94_M4241A]
 gi|328459031|gb|AEB04454.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           KZN 4207]
          Length = 330

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 16/89 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C         T       +++  ++ E    G +E     LT
Sbjct: 87  CNLC-----------CDYC--CVSSSPSTPHRELGAERIGRIVGEAARWGVRELF---LT 130

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GGEP L  D+  I A   +     V TNG
Sbjct: 131 GGEPFLLPDIDTIIATCVKQLPTTVLTNG 159


>gi|15841138|ref|NP_336175.1| MoaA-related protein [Mycobacterium tuberculosis CDC1551]
 gi|253799280|ref|YP_003032281.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           KZN 1435]
 gi|254231876|ref|ZP_04925203.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           C]
 gi|260186631|ref|ZP_05764105.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           CPHL_A]
 gi|260200745|ref|ZP_05768236.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           T46]
 gi|260204950|ref|ZP_05772441.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           K85]
 gi|297634233|ref|ZP_06952013.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           KZN 4207]
 gi|297731220|ref|ZP_06960338.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           KZN R506]
 gi|306775866|ref|ZP_07414203.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu001]
 gi|306779684|ref|ZP_07418021.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu002]
 gi|306784417|ref|ZP_07422739.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu003]
 gi|306788784|ref|ZP_07427106.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu004]
 gi|306793119|ref|ZP_07431421.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu005]
 gi|306797499|ref|ZP_07435801.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu006]
 gi|306803380|ref|ZP_07440048.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu008]
 gi|306971975|ref|ZP_07484636.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu010]
 gi|307084264|ref|ZP_07493377.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu012]
 gi|313658552|ref|ZP_07815432.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           KZN V2475]
 gi|13881356|gb|AAK45989.1| MoaA-related protein [Mycobacterium tuberculosis CDC1551]
 gi|124600935|gb|EAY59945.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           C]
 gi|253320783|gb|ACT25386.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           KZN 1435]
 gi|308215618|gb|EFO75017.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu001]
 gi|308327336|gb|EFP16187.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu002]
 gi|308330778|gb|EFP19629.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu003]
 gi|308334601|gb|EFP23452.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu004]
 gi|308338388|gb|EFP27239.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu005]
 gi|308342111|gb|EFP30962.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu006]
 gi|308349900|gb|EFP38751.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu008]
 gi|308358496|gb|EFP47347.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu010]
 gi|308366120|gb|EFP54971.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           SUMu012]
 gi|323719771|gb|EGB28885.1| molybdopterin biosynthesis protein moeX [Mycobacterium tuberculosis
           CDC1551A]
          Length = 331

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 16/89 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C         T       +++  ++ E    G +E     LT
Sbjct: 88  CNLC-----------CDYC--CVSSSPSTPHRELGAERIGRIVGEAARWGVRELF---LT 131

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETNG 120
           GGEP L  D+  I A   +     V TNG
Sbjct: 132 GGEPFLLPDIDTIIATCVKQLPTTVLTNG 160


>gi|289596414|ref|YP_003483110.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|289534201|gb|ADD08548.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
          Length = 312

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 9/82 (10%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100
           R + QC FC      +   +        +  +I+      E       L GGEP L+ D 
Sbjct: 31  RCNMQCPFC-----NVWNDRTPELPTKDVFKIIDRL---AESTVTVLSLEGGEPTLRKDI 82

Query: 101 VPLIQALNKRGFEIAVETNGTI 122
           + +I+  + + F + + TNGT+
Sbjct: 83  LDIIKYAHDQSFYLFMTTNGTL 104


>gi|296108949|ref|YP_003615898.1| Wyosine base formation domain protein [Methanocaldococcus infernus
           ME]
 gi|295433763|gb|ADG12934.1| Wyosine base formation domain protein [Methanocaldococcus infernus
           ME]
          Length = 305

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 34/113 (30%), Gaps = 25/113 (22%)

Query: 32  CNLWSGREQDRLSAQCRFC------DTDFVGIQGTKGGRYNVDQ---------------- 69
           C +            C FC      D D       +  +  V                  
Sbjct: 48  C-VQCTPSVIWCQQSCIFCWRVLPRDLDIDEFPSPEWEKPEVVAEKILELHKKAIMGYKG 106

Query: 70  LADLIEEQWITGEKEGRYCVLT-GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           + D + E+        ++  L+  GEP L   +  LI+    +GF   + +NG
Sbjct: 107 ILDRVGEKKFEEALNPKHIALSLSGEPTLYPYIDELIEIFKDKGFTTFLVSNG 159


>gi|255318717|ref|ZP_05359944.1| molybdenum cofactor biosynthesis protein A [Acinetobacter
           radioresistens SK82]
 gi|262378102|ref|ZP_06071259.1| molybdenum cofactor biosynthesis protein A [Acinetobacter
           radioresistens SH164]
 gi|255304215|gb|EET83405.1| molybdenum cofactor biosynthesis protein A [Acinetobacter
           radioresistens SK82]
 gi|262299387|gb|EEY87299.1| molybdenum cofactor biosynthesis protein A [Acinetobacter
           radioresistens SH164]
          Length = 347

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 17/91 (18%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY----CVLTGGEPL 96
           DR + +C +C                   L    EE +   +   R+      +TGGEPL
Sbjct: 27  DRCNFKCVYC-------MPEHPEWMKKQDLLS-FEELYQFCDFMVRHGIEAIRITGGEPL 78

Query: 97  LQVD----VPLIQALNKRGF-EIAVETNGTI 122
           ++      V  +QAL K G   I++ TNG  
Sbjct: 79  MRQGVVHFVEQLQALRKLGLKRISMTTNGHY 109


>gi|253582979|ref|ZP_04860197.1| radical SAM domain-containing protein [Fusobacterium varium ATCC
           27725]
 gi|251835185|gb|EES63728.1| radical SAM domain-containing protein [Fusobacterium varium ATCC
           27725]
          Length = 341

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 23/95 (24%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C   +     T     +++     I       + +    +L 
Sbjct: 18  CNL-----------KCKYC---YAQPVFTH-ELMSLETAKKAIN----LCKDKDFTLILA 58

Query: 92  GGEPLL--QVDVPLIQALNKRGF--EIAVETNGTI 122
           GGEPLL  +V   L Q L + G+  +I +++NGT+
Sbjct: 59  GGEPLLNFKVIEKLYQYLKENGYKCKIGLQSNGTL 93


>gi|258405933|ref|YP_003198675.1| Radical SAM domain-containing protein [Desulfohalobium retbaense
           DSM 5692]
 gi|257798160|gb|ACV69097.1| Radical SAM domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 442

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 16/104 (15%)

Query: 30  SGCNLWSGREQDRLSAQCR-----------FCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
           +GC    G   +     C             C   F     + G   ++D LA  +    
Sbjct: 73  AGCPFDCGLCPNHAQHTCTTLLEVTQRCNLGCPICFARSLDS-GTDPDLDTLARNMAHIR 131

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFE-IAVETNG 120
            T         L+GGEP ++ D+P I  L     F  + + TNG
Sbjct: 132 ETAGPCTLQ--LSGGEPTVRDDLPEIVRLAAAQNFRLVQLNTNG 173


>gi|16331653|ref|NP_442381.1| molybdenum cofactor biosynthesis protein A [Synechocystis sp. PCC
           6803]
 gi|3024143|sp|Q55369|MOAA_SYNY3 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|1001211|dbj|BAA10451.1| molybdenum cofactor biosynthesis protein A [Synechocystis sp. PCC
           6803]
          Length = 327

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 25/95 (26%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C      I   +    +  +  ++I E    G +E R   LT
Sbjct: 37  CNL-----------RCHYC-MPVDAIFLEQSSYLSCQEYGEIIGELIALGLEEVR---LT 81

Query: 92  GGEPLLQVD-VPLIQA-----LNKRGFEIAVETNG 120
           GGEPLL+ +   +++A     L K G      TNG
Sbjct: 82  GGEPLLRRNFTEIVRAIGQLKLKKIGLT----TNG 112


>gi|312116333|ref|YP_004013929.1| molybdenum cofactor biosynthesis protein A [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311221462|gb|ADP72830.1| molybdenum cofactor biosynthesis protein A [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 345

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          K     +++L  L       G ++ R   LTGGEPL++ +
Sbjct: 35  DRCDFRCVYC-MPDRMQFLPKAELLTLEELDRLCAGFIAKGVRKIR---LTGGEPLMRRN 90

Query: 101 VPLIQALNKRGF------EIAVETNGT 121
           + L+     R        E+ + +NG+
Sbjct: 91  LLLLVRALSRHLDAGTLDEVTLTSNGS 117


>gi|225850334|ref|YP_002730568.1| molybdenum cofactor biosynthesis protein A [Persephonella marina
           EX-H1]
 gi|225645594|gb|ACO03780.1| molybdenum cofactor biosynthesis protein A [Persephonella marina
           EX-H1]
          Length = 321

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 11/73 (15%)

Query: 41  DRLSAQCRFC--D-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           D+ + +C +C  D ++FV            +++A L++     G ++ R   +TGGEPL+
Sbjct: 12  DKCNLKCFYCRPDNSEFV----PHDEILRYEEIARLVKAMTKYGLRKVR---ITGGEPLV 64

Query: 98  QV-DVPLIQALNK 109
           +     L++ L  
Sbjct: 65  RPQLEELVKMLKD 77


>gi|218886909|ref|YP_002436230.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757863|gb|ACL08762.1| Radical SAM domain protein [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 238

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 18/100 (18%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +F    GCN+           +C  C                +   A  IE         
Sbjct: 27  IF--LGGCNM-----------RCPTC---HNWQLAWHADTLPLLSRAA-IESYIEARRHW 69

Query: 85  GRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
               V+TGGE  +      +++ L + G  + V++NG   
Sbjct: 70  LDGVVVTGGEATMVDGFADMLRGLRRFGLPVKVDSNGLRP 109


>gi|88602832|ref|YP_503010.1| radical SAM family protein [Methanospirillum hungatei JF-1]
 gi|88188294|gb|ABD41291.1| Radical SAM [Methanospirillum hungatei JF-1]
          Length = 388

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 28/98 (28%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GC            + C++C               N+  + D++       +       +
Sbjct: 14  GCP-----------SNCKYC-----WSSEEGSPVMNIQVVKDVVS---WLSDFRDDPVTI 54

Query: 91  T--GGEPLL-------QVDVPLIQALNKRGFEIAVETN 119
           T  GGEPLL       Q    L Q L K     A++TN
Sbjct: 55  TFHGGEPLLAGPDFYRQALPLLAQGLAKNKPSFAIQTN 92


>gi|78043029|ref|YP_359745.1| radical SAM domain-containing protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995144|gb|ABB14043.1| radical SAM domain protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 451

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 25/109 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   + G    K      ++L  L  E    G     + V++
Sbjct: 127 CNL-----------RCEGC---WAGAYA-KHDELEYERLDRLFNEAKELGIY---WIVMS 168

Query: 92  GGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGIDWI----CVSP 135
           GGEP +      L    N   F I   TNGT    +  D I     +SP
Sbjct: 169 GGEPFMYPYLFDLAAKHNDMAFMIY--TNGTRIDEKTADKIIEVGNISP 215


>gi|295400597|ref|ZP_06810575.1| YfkB-like domain protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294977500|gb|EFG53100.1| YfkB-like domain protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 374

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   +EE         R   +TGGEP+L +      
Sbjct: 44  RCEHCAVGYT-LQTKDPEALPLDLLIKRLEEI-----PHLRSLSITGGEPMLSLKSVDNY 97

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
            VPL++  ++RG    + +N T+E 
Sbjct: 98  VVPLLKYAHERGVRTQLNSNLTLEL 122


>gi|227500732|ref|ZP_03930781.1| radical SAM domain protein [Anaerococcus tetradius ATCC 35098]
 gi|227217139|gb|EEI82492.1| radical SAM domain protein [Anaerococcus tetradius ATCC 35098]
          Length = 728

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 33/105 (31%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL- 90
           CNL           +C +C   ++  + +   + + D     I+          +  +L 
Sbjct: 32  CNL-----------RCSYC---YITHKSSN-KKMSFDVAKKFIDYVLSEEIIRPKGVILD 76

Query: 91  -TGGEPLLQVDVPLIQALNKR--------------GFEIAVETNG 120
             GGEPLL  ++ LI  +                  + I + TNG
Sbjct: 77  FIGGEPLL--EIKLINQICDYFKLKTYLLNDEWYWDYRINITTNG 119


>gi|255505152|ref|ZP_05344771.3| radical SAM domain protein [Bryantella formatexigens DSM 14469]
 gi|255269307|gb|EET62512.1| radical SAM domain protein [Bryantella formatexigens DSM 14469]
          Length = 463

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 27/103 (26%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD--QLADLIEEQWITGEKEGRY-- 87
           CNL            CR+C       +G   GR  +   ++     +  I      R   
Sbjct: 115 CNL-----------ACRYC----FAEEGEYHGRRALMSYEVGKKALDFLIANSGSRRNLE 159

Query: 88  CVLTGGEPLL--QVDVPLI------QALNKRGFEIAVETNGTI 122
               GGEPL+  QV   L+      +AL+ + F   + TNG +
Sbjct: 160 VDFFGGEPLMNWQVVKDLVKYGREQEALHDKKFRFTLTTNGVL 202


>gi|91788473|ref|YP_549425.1| hypothetical protein Bpro_2611 [Polaromonas sp. JS666]
 gi|123164823|sp|Q12AB5|RLMN_POLSJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|91697698|gb|ABE44527.1| 23S rRNA m(2)A-2503 methyltransferase [Polaromonas sp. JS666]
          Length = 382

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 42/116 (36%), Gaps = 20/116 (17%)

Query: 24  AVFC----RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLADL-IEE 76
           AVF     R  G        Q   +  CRFC T   G     T G   +    A+  + +
Sbjct: 92  AVFIPETDR--G--TLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIVSQLWFAEHFLRQ 147

Query: 77  QWITGEKEGRYCVLTG-GEPLL---QVDVPLIQALNKRGF-----EIAVETNGTIE 123
                E+     V+ G GEPL    Q+   L   L+  G+      + V T+G + 
Sbjct: 148 HLGRQERVISNVVMMGMGEPLQNYSQLVPALRVMLDDHGYGLSRRRVTVSTSGVVP 203


>gi|330836810|ref|YP_004411451.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Spirochaeta coccoides DSM 17374]
 gi|329748713|gb|AEC02069.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Spirochaeta coccoides DSM 17374]
          Length = 188

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 19/88 (21%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            GC              C  C        G  G    V  + + I    +          
Sbjct: 43  QGCP-----------HACPGCHNPETWTSGV-GREMTVTDIYERIHRNPLFTG-----VT 85

Query: 90  LTGGEPLLQVD--VPLIQALNKRGFEIA 115
            +GG+PL Q      L       G+E+A
Sbjct: 86  FSGGDPLFQPSGFADLATLCKAGGYEVA 113


>gi|289580620|ref|YP_003479086.1| Wyosine base formation domain protein [Natrialba magadii ATCC
           43099]
 gi|289530173|gb|ADD04524.1| Wyosine base formation domain protein [Natrialba magadii ATCC
           43099]
          Length = 350

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 21/107 (19%)

Query: 38  REQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADL-----------------IEEQW 78
               + + +C FC  D      +       + + + D                  +  + 
Sbjct: 81  TPVVKCNERCVFCWRDHQGHAYEMDDVEWDDPEAVVDASIKLQKKLLSGFGGNDEVPREV 140

Query: 79  ITGEKEGRYCVLT-GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
                E R+  ++  GEP L   +P L+ A + R     + +NGT  
Sbjct: 141 FDEAMEPRHVAISLDGEPTLYPYLPELLAAFHDRDITTFLVSNGTRP 187


>gi|217076776|ref|YP_002334492.1| anaerobic ribonucleoside-triphosphate reductase-related protein
          [Thermosipho africanus TCF52B]
 gi|217036629|gb|ACJ75151.1| anaerobic ribonucleoside-triphosphate reductase-related protein
          [Thermosipho africanus TCF52B]
          Length = 172

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG--EKEGR 86
          F GC+          S +C FC       +  KG +Y+++ L  +++++        +  
Sbjct: 25 FQGCD---------RSPKCLFCHNKETW-EPYKGFKYDLEDLIQILKDKINYAFESYDKI 74

Query: 87 YCVLTGGEPL 96
            V  GGEPL
Sbjct: 75 AVVYLGGEPL 84


>gi|51894001|ref|YP_076692.1| hypothetical protein STH2863 [Symbiobacterium thermophilum IAM
           14863]
 gi|51857690|dbj|BAD41848.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 406

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 19/87 (21%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE--Q 77
            G    F               +   +C +C          +G  +  +   DL  E  +
Sbjct: 54  VGTATFF------------ASLKCHRRCFYC-----FNPNQEGYDFFQEHRRDLGAELAE 96

Query: 78  WITGEKEGRYCVLTGGEPLLQVDVPLI 104
              G  +  +  LTGGEPLL  +  + 
Sbjct: 97  LAEGGFQVSHVALTGGEPLLHPEEAVT 123


>gi|238785318|ref|ZP_04629307.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
           bercovieri ATCC 43970]
 gi|238713771|gb|EEQ05794.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
           bercovieri ATCC 43970]
          Length = 398

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I     TG +     V+ G
Sbjct: 132 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGTRPITNVVMMG 191

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL ++  VP +   L+  GF      + + T+G +     + D I V
Sbjct: 192 MGEPLLNLNNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 242


>gi|332179144|gb|AEE14833.1| Radical SAM domain protein [Thermodesulfobium narugense DSM 14796]
          Length = 335

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 18/95 (18%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              CNL           +       +  +   +G       L D I++         +  
Sbjct: 16  TQECNLKCVHCYRDAGER------KYNELATKEGK-----SLLDEIKKAG------FKIM 58

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           V +GGEPLL+ D+  L +  +  G      TNGT+
Sbjct: 59  VFSGGEPLLRKDIFELTRYASSIGLRPVFGTNGTL 93


>gi|329297584|ref|ZP_08254920.1| ribosomal RNA large subunit methyltransferase N [Plautia stali
           symbiont]
          Length = 376

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I    +TG++     V+ G
Sbjct: 110 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG 169

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 170 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 220


>gi|328552419|gb|AEB22911.1| YfkA [Bacillus amyloliquefaciens TA208]
 gi|328910769|gb|AEB62365.1| hypothetical protein LL3_00820 [Bacillus amyloliquefaciens LL3]
          Length = 373

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 86  RYCVLTGGEPLLQVD------VPLIQALNKRGFEIAVETNGTIEP 124
           R   +TGGEP+L +       VPL++  ++RG    + +N T++ 
Sbjct: 79  RSISITGGEPMLSLKSVKEYVVPLLKYAHERGVRTQINSNLTLDI 123


>gi|307132063|ref|YP_003884079.1| 23S rRNA m(2)A2503 methyltransferase [Dickeya dadantii 3937]
 gi|306529592|gb|ADM99522.1| 23S rRNA m(2)A2503 methyltransferase [Dickeya dadantii 3937]
          Length = 392

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I    +TG++     V+ G
Sbjct: 126 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG 185

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 186 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 236


>gi|292489050|ref|YP_003531937.1| hypothetical protein EAMY_2582 [Erwinia amylovora CFBP1430]
 gi|292900179|ref|YP_003539548.1| hypothetical protein EAM_2478 [Erwinia amylovora ATCC 49946]
 gi|291200027|emb|CBJ47152.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
 gi|291554484|emb|CBA22015.1| UPF0063 protein yfgB [Erwinia amylovora CFBP1430]
 gi|312173205|emb|CBX81460.1| UPF0063 protein yfgB [Erwinia amylovora ATCC BAA-2158]
          Length = 388

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I    +TG++     V+ G
Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG 181

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232


>gi|259907715|ref|YP_002648071.1| ribosomal RNA large subunit methyltransferase N [Erwinia pyrifoliae
           Ep1/96]
 gi|224963337|emb|CAX54822.1| conserved uncharacterized protein YfgB [Erwinia pyrifoliae Ep1/96]
 gi|283477569|emb|CAY73485.1| UPF0063 protein yfgB [Erwinia pyrifoliae DSM 12163]
 gi|310764777|gb|ADP09727.1| ribosomal RNA large subunit methyltransferase N [Erwinia sp.
           Ejp617]
          Length = 389

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I    +TG++     V+ G
Sbjct: 123 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG 182

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 183 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 233


>gi|218459838|ref|ZP_03499929.1| molybdenum cofactor biosynthesis protein A [Rhizobium etli Kim 5]
          Length = 139

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          K     +++L  L       G ++ R   LTGGEPL++ +
Sbjct: 18  DRCDFRCTYC-MAENMTFLPKKDLLTLEELDRLCSAFIAKGVRKIR---LTGGEPLVRKN 73

Query: 101 VP-LIQALNKR---GF-EIAVETNGT 121
           +  L++ L ++   G  E+ + TNG+
Sbjct: 74  IMYLVRRLGEKIGSGLDELTLTTNGS 99


>gi|257075637|ref|ZP_05569998.1| molybdenum cofactor biosynthesis protein A [Ferroplasma acidarmanus
           fer1]
          Length = 315

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 21/101 (20%)

Query: 46  QCRFCDTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
            C FC      ++GT+        +Q+ +++    +           TGGEPLL+ D+  
Sbjct: 32  HCIFC-----HMEGTERSMQYMTPEQIENVVA---VAASHGVNKIKFTGGEPLLREDILE 83

Query: 104 IQALNKRGFE--IAVETNGTIEPP--------QGIDWICVS 134
           I    ++     I++ TNG +E P         G+D + +S
Sbjct: 84  IVRRTRKHITGNISLTTNG-VELPKLAKGLKEAGLDRVNIS 123


>gi|325108676|ref|YP_004269744.1| radical SAM protein [Planctomyces brasiliensis DSM 5305]
 gi|324968944|gb|ADY59722.1| Radical SAM domain protein [Planctomyces brasiliensis DSM 5305]
          Length = 433

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 23/97 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C+ C      +    K  R   +    LI E    G         
Sbjct: 58  CNL-----------RCQGC-----WVDVAAKQQRIEPEAFHRLINEAKAEGNVFFGIV-- 99

Query: 91  TGGEPLLQVDVPLIQALNKR-GFEIAVETNGTIEPPQ 126
            GGEP +  D  L+  L +       + TNG    P+
Sbjct: 100 -GGEPFMHSD--LLDMLAEHPDCYFQIFTNGHFITPE 133


>gi|20088939|ref|NP_615014.1| tRNA-modifying enzyme [Methanosarcina acetivorans C2A]
 gi|19913785|gb|AAM03494.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 345

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 19/97 (19%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLAD------------------LIEEQWITGEKEGRY 87
           +C FC           G   + +++ +                   + E+W+ G +    
Sbjct: 98  RCLFCWRPTEVPVPAPGEWDSPEKIVEESIACQRKLITGFGGSPNALRERWLEGNEPNNV 157

Query: 88  CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
            +   GEP     +P LI+   KRGF   + TNGT+ 
Sbjct: 158 AISLSGEPTFYPYLPELIEEYEKRGFTTFLVTNGTVP 194


>gi|38233076|ref|NP_938843.1| hypothetical protein DIP0464 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38199335|emb|CAE48968.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 167

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 16/102 (15%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLI 104
           +C +C      +Q    G   VD L  L   +    +      V++GGEP         I
Sbjct: 2   RCVYC--HNAQLQEFAPGAVGVDDLVGLARRRIGLIDA----VVISGGEPTAVPGLAEAI 55

Query: 105 QALNKRGFEIAVETNG-------TI--EPPQGIDWICVSPKA 137
             ++  G  + + T G       T+  +P    DWI +  KA
Sbjct: 56  CRIHDLGLPVGLHTCGYAPKRLATLVSQPESRPDWIGLDIKA 97


>gi|254237379|ref|ZP_04930702.1| hypothetical protein PACG_03453 [Pseudomonas aeruginosa C3719]
 gi|126169310|gb|EAZ54821.1| hypothetical protein PACG_03453 [Pseudomonas aeruginosa C3719]
          Length = 384

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 35/108 (32%), Gaps = 10/108 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +             VD  LADL ++      +        
Sbjct: 11  PLALYVHIPWCVRKCPYCDFNSHAAGTELPEEAYVDALLADLEQDLRHVHGRRLGSIFFG 70

Query: 92  GGEPLLQVDVPLIQALN--------KRGFEIAVETN-GTIEPPQGIDW 130
           GG P L     L + L           G EI +E N GT E  +  D+
Sbjct: 71  GGTPSLFSAKALGRLLEGVERRVGFADGIEITLEANPGTFEQVKFADY 118


>gi|116054116|ref|YP_788559.1| coproporphyrinogen III oxidase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115589337|gb|ABJ15352.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 384

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 35/108 (32%), Gaps = 10/108 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +             VD  LADL ++      +        
Sbjct: 11  PLALYVHIPWCVRKCPYCDFNSHAAGTELPEEAYVDALLADLEQDLRHVHGRRLGSIFFG 70

Query: 92  GGEPLLQVDVPLIQALN--------KRGFEIAVETN-GTIEPPQGIDW 130
           GG P L     L + L           G EI +E N GT E  +  D+
Sbjct: 71  GGTPSLFSAKALGRLLEGVERRVGFADGIEITLEANPGTFEQVKFADY 118


>gi|332176313|gb|AEE12003.1| Radical SAM domain protein [Porphyromonas asaccharolytica DSM
           20707]
          Length = 379

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 14/99 (14%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL  G       + CR           +     +V     +I+      +      + T
Sbjct: 51  CNLHCGHC----GSDCRV---------ESGVDELSVADFIQIIDGLTPHVDPNKLLVIFT 97

Query: 92  GGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQGID 129
           GGE L++ D+     AL +RG+   + TNG +   Q +D
Sbjct: 98  GGEALVRKDIEEAGLALYRRGYPWGIVTNGMLLDAQRLD 136


>gi|283471147|emb|CAQ50358.1| conserved protein YfkA [Staphylococcus aureus subsp. aureus ST398]
          Length = 383

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 12/91 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q       ++D +   ++E         R   +TGGEP+         
Sbjct: 45  RCSHCAVGYT-LQTVDPEPLDMDLIYRRLDEI-----PNLRTMSITGGEPMFSKKSIRNV 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
             PL++  + RG  I + +N T+   + +D 
Sbjct: 99  VKPLLKYAHNRGIYIQMNSNLTLPQDRYLDI 129


>gi|312112313|ref|YP_003990629.1| YfkB-like domain-containing protein [Geobacillus sp. Y4.1MC1]
 gi|311217414|gb|ADP76018.1| YfkB-like domain-containing protein [Geobacillus sp. Y4.1MC1]
          Length = 374

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D L   +EE         R   +TGGEP+L +      
Sbjct: 44  RCEHCAVGYT-LQTKDPEALPLDLLIKRLEEI-----PHLRSLSITGGEPMLSLKSVDNY 97

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
            VPL++  ++RG    + +N T+E 
Sbjct: 98  VVPLLKYAHERGVRTQLNSNLTLEL 122


>gi|168204695|ref|ZP_02630700.1| 4Fe-4S binding domain protein/radical SAM domain protein
           [Clostridium perfringens E str. JGS1987]
 gi|170663810|gb|EDT16493.1| 4Fe-4S binding domain protein/radical SAM domain protein
           [Clostridium perfringens E str. JGS1987]
          Length = 273

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 53/164 (32%), Gaps = 45/164 (27%)

Query: 25  VFCRFSGCNLWS------------------------------GREQDRLSAQCRFCDTDF 54
           +F  F GCN                                   +      +C  CD   
Sbjct: 22  IF--FQGCNFKCLYCHNPETINKCISCGKCVENCEVGALSISDGKVIWDEEECISCDKCI 79

Query: 55  ---VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNK 109
                +   K   Y+V++L   IE+         R   ++GGE  L     + L + + K
Sbjct: 80  KLCENMSSPKLKEYSVEELVKKIEK----DSFFIRGITVSGGECTLNSEFLIKLFREVKK 135

Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
            G    V+TNG  +    +  I ++ K   D+K     E + ++
Sbjct: 136 LGLTCFVDTNGNTKLDDEL--INLTDKFMLDVK--SIDEKENIW 175


>gi|206564576|ref|YP_002235339.1| MoaA/NifB/PqqE family protein [Burkholderia cenocepacia J2315]
 gi|254249633|ref|ZP_04942953.1| hypothetical protein BCPG_04498 [Burkholderia cenocepacia PC184]
 gi|124876134|gb|EAY66124.1| hypothetical protein BCPG_04498 [Burkholderia cenocepacia PC184]
 gi|198040616|emb|CAR56602.1| MoaA/NifB/PqqE family protein [Burkholderia cenocepacia J2315]
          Length = 386

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 22/116 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +V++    ++E             +
Sbjct: 38  CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLQAVDECG------APVVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
            GGEPLL  ++P +++ + KR   + + TN  +   + +D    SP     + + G
Sbjct: 79  AGGEPLLHKEMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYQPSPYFVWSVHLDG 133


>gi|315635794|ref|ZP_07891056.1| molybdenum cofactor biosynthesis protein A [Arcobacter butzleri
           JV22]
 gi|315479773|gb|EFU70444.1| molybdenum cofactor biosynthesis protein A [Arcobacter butzleri
           JV22]
          Length = 323

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 10/85 (11%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           +R + +C++C  +  F  +        + + L   I+     G K+ R   +TGGEPLL+
Sbjct: 19  ERCNFRCQYCMPEKPFSWVPREN--LLSYEDLFKFIKASIDEGIKKVR---ITGGEPLLR 73

Query: 99  VDVPLIQALN---KRGFEIAVETNG 120
            D+     +    K+  ++A+ TNG
Sbjct: 74  EDLDFFIKMVFDYKKDIDLALTTNG 98


>gi|254487119|ref|ZP_05100324.1| radical SAM domain protein [Roseobacter sp. GAI101]
 gi|214043988|gb|EEB84626.1| radical SAM domain protein [Roseobacter sp. GAI101]
          Length = 315

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 8/89 (8%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY--NVDQLADLIEEQWITGEKEGRYCVLT 91
           LW        + +C  C   ++    T         D++ D + +              T
Sbjct: 35  LWFNT-GTLCNIECVNC---YIASSPTNDALIYITADEVRDYLGQITTRNWPVTE-VAFT 89

Query: 92  GGEPLLQV-DVPLIQALNKRGFEIAVETN 119
           GGEP +    + + +A    G+++ + TN
Sbjct: 90  GGEPFMNPQMIEITEASLSAGYDVLILTN 118


>gi|307150486|ref|YP_003885870.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Cyanothece sp. PCC 7822]
 gi|306980714|gb|ADN12595.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Cyanothece sp. PCC 7822]
          Length = 339

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 20/118 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C       +     +    +    +EE             + 
Sbjct: 38  CNL-----------ACSGCG-KIQHPKEILKQQLTPQECFAAVEECG------APVVSIP 79

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
           GGEPLL   +  ++Q L KR   + + TN  I   + +     SP     + + G +E
Sbjct: 80  GGEPLLHPQIDEIVQGLVKRKKFVYLCTN-AILLEKNLHKFEPSPYLTFSVHLDGLKE 136


>gi|11499786|ref|NP_071029.1| arylsulfatase regulatory protein, putative [Archaeoglobus fulgidus
           DSM 4304]
 gi|3334443|sp|O28079|Y2204_ARCFU RecName: Full=Uncharacterized protein AF_2204
 gi|2648320|gb|AAB89048.1| arylsulfatase regulatory protein, putative [Archaeoglobus fulgidus
           DSM 4304]
          Length = 412

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 36/77 (46%), Gaps = 8/77 (10%)

Query: 46  QCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
            C +C   ++  +   +G + + ++L +++    +  E      +  G EPL+  D  + 
Sbjct: 67  NCPYC---YIPAEIRERGTKMSYEKLEEILT---VLAENGVERVIFHGAEPLMVKD-EIF 119

Query: 105 QALNKRGFEIAVETNGT 121
           +A+    F+  ++TN T
Sbjct: 120 RAMEDFDFKYGIQTNAT 136


>gi|326388223|ref|ZP_08209826.1| coenzyme Pyrrolo-quinoline quinone (PQQ) synthesis protein E PqqE
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207389|gb|EGD58203.1| coenzyme Pyrrolo-quinoline quinone (PQQ) synthesis protein E PqqE
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 359

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 14/102 (13%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R   QC +C      ++ T     +      +IE+    G  +  +   TGGEPL + D+
Sbjct: 10  RCPLQCAYCANPLELVRPT--EELDTSGWKRVIEQAAELGVLQFHF---TGGEPLARRDL 64

Query: 102 -PLIQALNKRGFEIAVETNGTIEPP--------QGIDWICVS 134
             L+      G    + T+G +  P         GID I +S
Sbjct: 65  VELVAHAAANGLYTNLITSGVLLTPDLMAALVTAGIDHIQLS 106


>gi|319783989|ref|YP_004143465.1| coenzyme PQQ biosynthesis protein E [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169877|gb|ADV13415.1| coenzyme PQQ biosynthesis protein E [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 373

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R   QC +C      ++       + +    L  E    G  +     L+GGEP L+ D+
Sbjct: 18  RCPLQCPYCSNPLELLKA--NRELDTETWLALFSEAADLGVLQVH---LSGGEPTLRRDL 72

Query: 102 P-LIQALNKRGFEIAVETNG 120
             LI  L  RG    + T G
Sbjct: 73  EQLIAGLAGRGVYTNLITAG 92


>gi|304438930|ref|ZP_07398853.1| radical SAM domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372596|gb|EFM26179.1| radical SAM domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 468

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 26/95 (27%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGRYCV 89
           CNL           +C  C           G + N+  +++ D+I +    G        
Sbjct: 122 CNL-----------KCTGC------WAAEYGHKLNLTFEEMDDIITQGKELGCYFYL--- 161

Query: 90  LTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122
           LTGGEPL+     + L +  N  GF     TNGT+
Sbjct: 162 LTGGEPLVRKDDLIRLCEKHNDCGFHAF--TNGTL 194


>gi|268323224|emb|CBH36812.1| molybdenum cofactor biosynthesis protein A [uncultured archaeon]
          Length = 324

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 22/100 (22%)

Query: 27  CRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE- 82
            RFS    CNL            C +C       +G    +   +  A+LI         
Sbjct: 26  LRFSLTNRCNL-----------NCIYC-----HNEGEGRDKVKAEISAELIIAIARVAST 69

Query: 83  -KEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
               R    +GGEPL++ D+  ++  +     +I+V TNG
Sbjct: 70  YFGIRRIKFSGGEPLMRADLAEIVHGIRDYEDDISVTTNG 109


>gi|320010716|gb|ADW05566.1| Radical SAM domain protein [Streptomyces flavogriseus ATCC 33331]
          Length = 361

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R    C  C T   G   T     + D+L   +     T E      +LTGGEPLL    
Sbjct: 24  RCPLSCAHCST---GSSLTTREEPDADRLVRFVGSF--TRENRPDVVMLTGGEPLLLP-- 76

Query: 102 PLIQALNKR 110
            L++ L+ R
Sbjct: 77  ALVEELSAR 85


>gi|220903570|ref|YP_002478882.1| Radical SAM domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867869|gb|ACL48204.1| Radical SAM domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 394

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 17/95 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              CNL           +C  C    + + GT     N  Q   +I++            
Sbjct: 47  TQRCNL-----------KCVHCYAHAIEVDGTDD--INTQQAKAMIDDL---AAYGAPVM 90

Query: 89  VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           + +GGEPL++ D+  L      +G    + TNGT+
Sbjct: 91  LFSGGEPLVRKDLVELASHATSKGMRAVISTNGTL 125


>gi|212702237|ref|ZP_03310365.1| hypothetical protein DESPIG_00248 [Desulfovibrio piger ATCC 29098]
 gi|212674363|gb|EEB34846.1| hypothetical protein DESPIG_00248 [Desulfovibrio piger ATCC 29098]
          Length = 165

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 24/93 (25%), Gaps = 21/93 (22%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           VF    GC              C  C           G     D +     E  +     
Sbjct: 24  VF--TQGCP-----------HHCPGCHNPQT-HDFDGGEFRETDDILRQFMENPLLSG-- 67

Query: 85  GRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
                 +GGEP +Q      L  A++  G  + 
Sbjct: 68  ---ITFSGGEPFVQAEPLCHLADAVHAAGKNVY 97


>gi|157736630|ref|YP_001489313.1| molybdenum cofactor biosynthesis protein A [Arcobacter butzleri
           RM4018]
 gi|167011811|sp|A8ERS0|MOAA_ARCB4 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|157698484|gb|ABV66644.1| molybdopterin biosynthesis protein A [Arcobacter butzleri RM4018]
          Length = 323

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 10/85 (11%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           +R + +C++C  +  F  +        + + L   I+     G K+ R   +TGGEPLL+
Sbjct: 19  ERCNFRCQYCMPEKPFSWVPREN--LLSYEDLFKFIKASIDEGIKKVR---ITGGEPLLR 73

Query: 99  VDVPLIQALN---KRGFEIAVETNG 120
            D+     +    K+  ++A+ TNG
Sbjct: 74  EDLDFFIKMVFDYKKDIDLALTTNG 98


>gi|315655148|ref|ZP_07908050.1| molybdopterin cofactor biosynthesis protein A [Mobiluncus curtisii
           ATCC 51333]
 gi|315490629|gb|EFU80252.1| molybdopterin cofactor biosynthesis protein A [Mobiluncus curtisii
           ATCC 51333]
          Length = 361

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 10/70 (14%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY----CVLTGGEPL 96
           DR   +C +C      +           +L D  E   + G    R       LTGGEPL
Sbjct: 42  DRCDLRCSYC------LPRGGVKWVPRRELLDASEILRLVGIAIHRLGITQVRLTGGEPL 95

Query: 97  LQVDVPLIQA 106
           L+ D+  I A
Sbjct: 96  LRPDLLEIAA 105


>gi|296328188|ref|ZP_06870719.1| conserved hypothetical protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154700|gb|EFG95486.1| conserved hypothetical protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 788

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 24/98 (24%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK--EGRYCV 89
           CNL            C +C   +V    T+      +    +  E         E    V
Sbjct: 109 CNL-----------NCLYC---YVDSSPTRSNYMKPEIAIKIASELINMNSDNEEILTVV 154

Query: 90  LTGGEPLLQVDVPLIQALNKR------GFEIAVETNGT 121
             GGEP L  ++  I+A  +        F++ ++TNGT
Sbjct: 155 FHGGEPTL--NLNAIRAFCEYIIPYRDRFDLCIQTNGT 190


>gi|293605264|ref|ZP_06687650.1| molybdenum cofactor biosynthesis protein A [Achromobacter
           piechaudii ATCC 43553]
 gi|292816320|gb|EFF75415.1| molybdenum cofactor biosynthesis protein A [Achromobacter
           piechaudii ATCC 43553]
          Length = 344

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 8/85 (9%)

Query: 41  DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR   +C +C   DF G + T        ++A +I      G  + R   LTGGEPLL+ 
Sbjct: 35  DRCDLRCSYCLPKDFKGFE-TPANWLTHAEMARVIGLFVALGVAKLR---LTGGEPLLRR 90

Query: 100 -DVPLIQALNK-RGFE-IAVETNGT 121
               L  A++   G   ++V TNGT
Sbjct: 91  GLTDLAGAVSAMAGVTDLSVSTNGT 115


>gi|126309965|ref|XP_001379493.1| PREDICTED: similar to Molybdenum cofactor biosynthesis protein 1 B
           (MOCS1B) (Molybdenum cofactor synthesis-step 1 protein
           A-B) (Molybdenum cofactor biosynthesis protein C)
           [Monodelphis domestica]
          Length = 626

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       ++ + +C++C  +       K       ++  L       G  + R   LTG
Sbjct: 60  NYLRISLTEKCNLRCQYCMPEEGVPLTPKADLLTTREILTLSRLFVKEGVDKIR---LTG 116

Query: 93  GEPLLQVD-VPLIQALNKRG--FEIAVETNG 120
           GEPL++ D V ++  L +      IA+ TNG
Sbjct: 117 GEPLIRPDVVDIVAQLQQLDSLKTIAITTNG 147


>gi|158521818|ref|YP_001529688.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158510644|gb|ABW67611.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 363

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 11/86 (12%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
                 R   +C+ C             +   D   ++  E+         +  LTGGEP
Sbjct: 19  CIILTYRCQMRCQMC----------NIWQNPSDPAREITAEELKILPAGFEFINLTGGEP 68

Query: 96  LLQVDV-PLIQALNKRGFEIAVETNG 120
            L+ D+  +I  L+ +   I V T+G
Sbjct: 69  FLRDDLEEIISVLSPKAKRIVVSTSG 94


>gi|57642160|ref|YP_184638.1| molybdenum cofactor biosynthesis protein A [Thermococcus
           kodakarensis KOD1]
 gi|73921006|sp|Q5JHN5|MOAA_PYRKO RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|57160484|dbj|BAD86414.1| molybdenum cofactor biosynthesis protein A [Thermococcus
           kodakarensis KOD1]
          Length = 307

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 40/170 (23%)

Query: 21  GRVAVFCR---FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           GR     R      CN            +C FC     G +         +++  L+   
Sbjct: 7   GRPVTNLRISLTQECNY-----------RCFFC--HREGQRFLAKNELTPEEIERLV--- 50

Query: 78  WITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI-------EPPQGID 129
            I      R   LTGGEP ++ D + +++ +     ++++ TNG+            G+D
Sbjct: 51  RIASRLGIRKVKLTGGEPTVREDILEIVKRIKPYVIDLSMTTNGSRLKELAKPLAKAGLD 110

Query: 130 WICV---SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
            + V   S K     +I G   L+ V   +  + +           L P+
Sbjct: 111 RVNVSLHSLKPEVYKRITGVDGLEAVLEGIEEAVK----------YLSPV 150


>gi|134300107|ref|YP_001113603.1| molybdenum cofactor biosynthesis protein A [Desulfotomaculum
           reducens MI-1]
 gi|172044320|sp|A4J6S5|MOAA_DESRM RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|134052807|gb|ABO50778.1| GTP cyclohydrolase subunit MoaA [Desulfotomaculum reducens MI-1]
          Length = 325

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +C +C       Q       ++++ A +++     G ++ R   +TG
Sbjct: 10  NYLRISVTDRCNLRCVYCMPPEGVKQTPHSEILSLEEFARVVDAASDIGIRKIR---ITG 66

Query: 93  GEPLLQVDVPLIQALNKRGF-----EIAVETNGTIEPPQGID 129
           GEPL++ ++  +    K        +I++ TNG +      D
Sbjct: 67  GEPLVRKNI--VNLFEKISTNSAIDDISLTTNGVLFAEMASD 106


>gi|158317474|ref|YP_001509982.1| radical SAM domain-containing protein [Frankia sp. EAN1pec]
 gi|158112879|gb|ABW15076.1| Radical SAM domain protein [Frankia sp. EAN1pec]
          Length = 414

 Score = 36.2 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 33/99 (33%), Gaps = 14/99 (14%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A   +        Q        V+  A  +     T E      +L 
Sbjct: 47  CNLSCTYCYVYHQADQNW------RQQPVTMSPAVVEATARRLAAHAKTHELPWMQIILH 100

Query: 92  GGEPLLQVDVPL----IQALNKRGFEIAVE----TNGTI 122
           GGEPLL     L     + L   G + AVE    TNGT+
Sbjct: 101 GGEPLLAGHDHLRNVAERLLAAVGTDTAVEFVLQTNGTL 139


>gi|313673752|ref|YP_004051863.1| gtp cyclohydrolase subunit moaa [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940508|gb|ADR19700.1| GTP cyclohydrolase subunit MoaA [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 327

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 14/89 (15%)

Query: 41  DRLSAQCRFC-DT-DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           DR + +C++C  T +F  I+  +  RY      DLI    I  +   +   LTGGEPL++
Sbjct: 21  DRCNFRCKYCIPTHNFKFIEHKQILRYE-----DLIFALKIFSKYGIKKIRLTGGEPLVR 75

Query: 99  VDVPLIQALNKRGFEIAVE-----TNGTI 122
               L   +     E  +E     TNG++
Sbjct: 76  KG--LTNFIKSIKSETDIEEITLTTNGSL 102


>gi|300864557|ref|ZP_07109420.1| Radical SAM domain protein [Oscillatoria sp. PCC 6506]
 gi|300337456|emb|CBN54568.1| Radical SAM domain protein [Oscillatoria sp. PCC 6506]
          Length = 470

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 20/110 (18%)

Query: 31  GCNLWSGREQDRLSAQCR----------------FCDT--DFVGIQGTKGGRYNVDQLAD 72
           GC    G   D     C                 + D+  + +     +   +      +
Sbjct: 80  GCPYDCGLCPDHEQHSCLTLIELTDKCNLSCPICYADSGIEEISPHSNQSRLHRSLAQIE 139

Query: 73  LIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETNG 120
           ++ +  +  E E +   L+GGEP L  +   ++  +  +    + + TNG
Sbjct: 140 MMLDAVVANEGEPQIVQLSGGEPTLHPEFFEVMDLVKSKPIKHLMINTNG 189


>gi|299769674|ref|YP_003731700.1| molybdenum cofactor biosynthesis protein A [Acinetobacter sp. DR1]
 gi|298699762|gb|ADI90327.1| molybdenum cofactor biosynthesis protein A [Acinetobacter sp. DR1]
          Length = 343

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 16/106 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C    +        + ++     L +      ++      +TGGEPL++  
Sbjct: 30  DRCNFKCVYC----MPEHPEWLNKQDLLSFEALFQFCRFMVQQGIESIRITGGEPLMRQG 85

Query: 101 VPL----IQALNKRGF-EIAVETNGTIEP-------PQGIDWICVS 134
           +      +QAL   G   I++ TNG             G+D + +S
Sbjct: 86  IVHFVRDLQALKALGLKRISMTTNGHYLAKYAKQLKDAGLDDLNIS 131


>gi|256752725|ref|ZP_05493574.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748400|gb|EEU61455.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 317

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C  +    +         +++  +I    I+ E   +    TGGEPL++  
Sbjct: 18  DRCNLRCIYCMPEEGIPKKDHNEILRNEEILKII---RISAELGIKKVRFTGGEPLVRKG 74

Query: 101 VP--LIQALNKRGFE-IAVETNGTI 122
           +   + +    +G E IA+ TNGT+
Sbjct: 75  IENIIYETSKIKGIEDIALTTNGTM 99


>gi|218889127|ref|YP_002437991.1| coproporphyrinogen III oxidase [Pseudomonas aeruginosa LESB58]
 gi|218769350|emb|CAW25110.1| probable oxidase [Pseudomonas aeruginosa LESB58]
          Length = 384

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 35/108 (32%), Gaps = 10/108 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +             VD  LADL ++      +        
Sbjct: 11  PLALYVHIPWCVRKCPYCDFNSHAAGPELPEEAYVDALLADLEQDLRHVHGRRLGSIFFG 70

Query: 92  GGEPLLQVDVPLIQALN--------KRGFEIAVETN-GTIEPPQGIDW 130
           GG P L     L + L           G EI +E N GT E  +  D+
Sbjct: 71  GGTPSLFSAKALGRLLEGVERRVGFADGIEITLEANPGTFEQVKFADY 118


>gi|15595583|ref|NP_249077.1| coproporphyrinogen III oxidase [Pseudomonas aeruginosa PAO1]
 gi|9946239|gb|AAG03775.1|AE004476_5 probable oxidase [Pseudomonas aeruginosa PAO1]
          Length = 384

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 35/108 (32%), Gaps = 10/108 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +             VD  LADL ++      +        
Sbjct: 11  PLALYVHIPWCVRKCPYCDFNSHAAGPELPEEAYVDALLADLEQDLRHVHGRRLGSIFFG 70

Query: 92  GGEPLLQVDVPLIQALN--------KRGFEIAVETN-GTIEPPQGIDW 130
           GG P L     L + L           G EI +E N GT E  +  D+
Sbjct: 71  GGTPSLFSAKALGRLLEGVERRVGFADGIEITLEANPGTFEQVKFADY 118


>gi|254243485|ref|ZP_04936807.1| hypothetical protein PA2G_04301 [Pseudomonas aeruginosa 2192]
 gi|126196863|gb|EAZ60926.1| hypothetical protein PA2G_04301 [Pseudomonas aeruginosa 2192]
          Length = 384

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 35/108 (32%), Gaps = 10/108 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +             VD  LADL ++      +        
Sbjct: 11  PLALYVHIPWCVRKCPYCDFNSHAAGPELPEEAYVDALLADLEQDLRHVHGRRLGSIFFG 70

Query: 92  GGEPLLQVDVPLIQALN--------KRGFEIAVETN-GTIEPPQGIDW 130
           GG P L     L + L           G EI +E N GT E  +  D+
Sbjct: 71  GGTPSLFSAKALGRLLEGVERRVGFADGIEITLEANPGTFEQVKFADY 118


>gi|332157688|ref|YP_004422967.1| molybdenum cofactor biosynthesis MoaA [Pyrococcus sp. NA2]
 gi|331033151|gb|AEC50963.1| molybdenum cofactor biosynthesis MoaA [Pyrococcus sp. NA2]
          Length = 966

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF 112
           F   +G       ++Q+  ++                TGGEP L+ D+  +I+   + G+
Sbjct: 537 FYAREGEPIYEPTLEQIRMMLRNAKKQHPIGANAVQFTGGEPTLRDDLVEIIKIAKEEGY 596

Query: 113 -EIAVETNG 120
             I + T+G
Sbjct: 597 DHIQLNTDG 605


>gi|329896073|ref|ZP_08271309.1| putative Fe-S oxidoreductase [gamma proteobacterium IMCC3088]
 gi|328922033|gb|EGG29397.1| putative Fe-S oxidoreductase [gamma proteobacterium IMCC3088]
          Length = 254

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 14/92 (15%)

Query: 31  GCNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           GCNL           +C+FC  D   V    T G  Y   Q+ D +              
Sbjct: 52  GCNL-----------RCKFCFSD-KPVWKPATTGQFYTPQQVFDGLASNARKYGHSTISA 99

Query: 89  VLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
             + G    Q  + L+  + +  F   +ETNG
Sbjct: 100 SASEGTLGRQHLLELLDLVEQSEFVYILETNG 131


>gi|291279838|ref|YP_003496673.1| radical SAM domain protein [Deferribacter desulfuricans SSM1]
 gi|290754540|dbj|BAI80917.1| radical SAM domain protein [Deferribacter desulfuricans SSM1]
          Length = 354

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 25/112 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL     +                   +  G + +D+   L++E            VL+
Sbjct: 18  CNLNCVHCRSSSDIH-------------SPEGLFTLDKCFKLLDEIKEVA---TPVIVLS 61

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ--------GIDWICVS 134
           GGEPLL+ DV  + +   ++GF + + TNG +   +        GI  + +S
Sbjct: 62  GGEPLLRKDVFDIARYGTEKGFRMCMATNGVLVNDEICMKIKDSGIKIVSLS 113


>gi|242278348|ref|YP_002990477.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242121242|gb|ACS78938.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 357

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDVPLI 104
           +C+FC  D+   + T       + L  ++++    G+   R C++ G GEPLL     L 
Sbjct: 43  RCKFCYADYSRHKPTF---IPDETLIQMMQDM---GDMGVRSCLMAGDGEPLLHP--ALT 94

Query: 105 QAL---NKRGFEIAVETNGTIEPPQ 126
           +A+      G ++A+ TNG +  P+
Sbjct: 95  KAITTGKNAGVDMALNTNGKLLTPE 119


>gi|308070127|ref|YP_003871732.1| Molybdenum cofactor biosynthesis protein A [Paenibacillus polymyxa
           E681]
 gi|305859406|gb|ADM71194.1| Molybdenum cofactor biosynthesis protein A [Paenibacillus polymyxa
           E681]
          Length = 338

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 16/92 (17%)

Query: 41  DRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           DR + +C +C       D D+  +   +    + +++  L +     G K+ R   LTGG
Sbjct: 23  DRCNFRCSYCMPKEIFGD-DYAFL--PQNECLSFEEIHRLTKLFVSLGVKKIR---LTGG 76

Query: 94  EPLLQVDVP-LI-QALNKRGFE-IAVETNGTI 122
           EPL++ ++P L+ Q L+  G E I + TNG +
Sbjct: 77  EPLMRRNLPDLVSQILSIDGVEDIGLTTNGVL 108


>gi|225181444|ref|ZP_03734887.1| molybdenum cofactor biosynthesis protein A [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167842|gb|EEG76650.1| molybdenum cofactor biosynthesis protein A [Dethiobacter
           alkaliphilus AHT 1]
          Length = 328

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 21/96 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C         +  G+ + + +   +      G K+ R   LT
Sbjct: 23  CNL-----------RCFYCSPGESCKPRSLRGQLSREHIVRAVTAAAKAGIKKVR---LT 68

Query: 92  GGEPLLQVDVPLIQALNK----RGFE-IAVETNGTI 122
           GGEPL++ D+  +  ++      G E +++ TNGT+
Sbjct: 69  GGEPLVRRDI--VGLVHDIAQIEGIEDLSLTTNGTL 102


>gi|163942456|ref|YP_001647340.1| molybdenum cofactor biosynthesis protein A [Bacillus
           weihenstephanensis KBAB4]
 gi|163864653|gb|ABY45712.1| molybdenum cofactor biosynthesis protein A [Bacillus
           weihenstephanensis KBAB4]
          Length = 337

 Score = 36.2 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 16/76 (21%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L +     G ++ R   LTG
Sbjct: 22  DRCNLRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKVFVSIGVRKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQAL 107
           GEPLL+ D+  LI+ L
Sbjct: 75  GEPLLRKDLAKLIERL 90


>gi|313887300|ref|ZP_07820991.1| radical SAM domain protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923219|gb|EFR34037.1| radical SAM domain protein [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 383

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 14/99 (14%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL  G       + CR           +     +V     +I+      +      + T
Sbjct: 55  CNLHCGHC----GSDCRV---------ESGVDELSVADFIQIIDGLTPHVDPNKLLVIFT 101

Query: 92  GGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQGID 129
           GGE L++ D+     AL +RG+   + TNG +   Q +D
Sbjct: 102 GGEALVRKDIEEAGLALYRRGYPWGIVTNGMLLNAQRLD 140


>gi|307243816|ref|ZP_07525947.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678]
 gi|306492819|gb|EFM64841.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678]
          Length = 457

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 31/114 (27%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA--DLIEEQWITGEKEGRYCV 89
           CNL           +C++C       QG  GG+  +  L       +  I      R   
Sbjct: 104 CNL-----------KCKYC----FAKQGDFGGKAELMPLEVGKKALDYLIANSGNRRNLE 148

Query: 90  LT--GGEPLLQVDVPLIQALNKRGFEIA----------VETNGTIEPPQGIDWI 131
           +   GGEPL+  + P+++ L K G E+           + TNG +   + ID+I
Sbjct: 149 IDFFGGEPLM--NWPVVKELVKYGREVEKPAGKNIRFTITTNGVLLDDEKIDFI 200


>gi|300311209|ref|YP_003775301.1| molybdenum cofactor biosynthesis protein A [Herbaspirillum
           seropedicae SmR1]
 gi|300073994|gb|ADJ63393.1| molybdenum cofactor biosynthesis protein A [Herbaspirillum
           seropedicae SmR1]
          Length = 393

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 12/76 (15%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D  +  +  +       ++L  +  +    G ++ R   LTGGE
Sbjct: 73  DRCNFRCVYCMPKDVFDKQYQFLPHSD--LLTFEELTRVAAQFVAHGVRKIR---LTGGE 127

Query: 95  PLLQVDVP-LIQALNK 109
           PLL+ ++  LI  L  
Sbjct: 128 PLLRKNIETLIGMLAA 143


>gi|188585597|ref|YP_001917142.1| Radical SAM domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350284|gb|ACB84554.1| Radical SAM domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 452

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 21/95 (22%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            S CNL           +C+ C   + G         + + +  LI E    G     + 
Sbjct: 121 TSKCNL-----------RCKGC---WAGTY-DHHDELDFETVDRLITEGKELGIY---FI 162

Query: 89  VLTGGEPLLQVDVPLIQALNKRGFEIAVE-TNGTI 122
            L+GGEP      PL++   K    + +  TNGT+
Sbjct: 163 PLSGGEPFAWD--PLLELCEKHDDVVFMPYTNGTL 195


>gi|15965617|ref|NP_385970.1| molybdenum cofactor biosynthesis protein A [Sinorhizobium meliloti
           1021]
 gi|307302736|ref|ZP_07582492.1| molybdenum cofactor biosynthesis protein A [Sinorhizobium meliloti
           BL225C]
 gi|307318584|ref|ZP_07598018.1| molybdenum cofactor biosynthesis protein A [Sinorhizobium meliloti
           AK83]
 gi|24211996|sp|Q92PB4|MOAA_RHIME RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|15074798|emb|CAC46443.1| Probable molybdenum cofactor biosynthesis protein [Sinorhizobium
           meliloti 1021]
 gi|306895924|gb|EFN26676.1| molybdenum cofactor biosynthesis protein A [Sinorhizobium meliloti
           AK83]
 gi|306903100|gb|EFN33691.1| molybdenum cofactor biosynthesis protein A [Sinorhizobium meliloti
           BL225C]
          Length = 349

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 20/149 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C  + +     K     +++L  L       G ++ R   LTGGEPL++ +
Sbjct: 38  DRCDFRCTYCMAEHMAFL-PKKDLLTLEELQRLCSAFIAKGVRKLR---LTGGEPLVRKN 93

Query: 101 VP-LIQAL---NKRGF--EIAVETNGTI-------EPPQGIDWICVSPKAGCDLK---IK 144
           +  LI+ L    + G   E+ + TNG+            G+  I VS       K   I 
Sbjct: 94  IMFLIRELGKEIEAGRLDELTLTTNGSQLSKFAAELVDCGVRRINVSLDTLDPDKFRQIT 153

Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSL 173
              EL  V   ++ +    +       +L
Sbjct: 154 RWGELARVLEGIDAALAAGLKVKINAVAL 182


>gi|325962676|ref|YP_004240582.1| Fe-S oxidoreductase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468763|gb|ADX72448.1| putative Fe-S oxidoreductase [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 529

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 16/91 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   F        G   + ++   ++ +           +L+
Sbjct: 128 CNL-----------RCPTC---FTASGPQLQGVAPLSEVLANVDTRLSRENGRLDVLMLS 173

Query: 92  GGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
           GGEP L   +  L+  L  R    I V +NG
Sbjct: 174 GGEPTLYPHLAELLDELVARPIVRIMVNSNG 204


>gi|224584897|ref|YP_002638696.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224469425|gb|ACN47255.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 378

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L+DL  +      +E +   + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVVWAQGREVKTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L              EI +E N GT+E  + ID+
Sbjct: 66  GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113


>gi|297582628|ref|YP_003698408.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Bacillus selenitireducens MLS10]
 gi|297141085|gb|ADH97842.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Bacillus selenitireducens MLS10]
          Length = 163

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 22/110 (20%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           R  VF  F+GC              C  C               +   ++ +I+      
Sbjct: 21  RSVVF--FAGCP-----------HHCLGC----HNPDSWIRENGSEQPVSAIIDTLL--- 60

Query: 82  EKEGRYCVLTGGEPLLQVDVP-LI-QALNKRGFEIAVETNGTIEPPQGID 129
           +       L+GGEP  Q     LI +A  K G ++ V T  T+E     D
Sbjct: 61  QNPLSDVTLSGGEPFEQAQAAGLIAKACQKAGKDVWVFTGWTLEALLDRD 110


>gi|157146584|ref|YP_001453903.1| molybdenum cofactor biosynthesis protein A [Citrobacter koseri ATCC
           BAA-895]
 gi|157083789|gb|ABV13467.1| hypothetical protein CKO_02345 [Citrobacter koseri ATCC BAA-895]
          Length = 340

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 33  DVCNFRCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 88

Query: 99  VD-VPLIQALNKRG--FEIAVETNGTIEPPQGIDW 130
            D   +I A+ +     +IAV TNG        +W
Sbjct: 89  RDFTDIIAAVRENDAIRQIAVTTNGYRLARDAANW 123


>gi|153952032|ref|YP_001397419.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|166217243|sp|A7H1N9|MOAA_CAMJD RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|152939478|gb|ABS44219.1| molybdenum cofactor biosynthesis protein [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 320

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N        R + +C +C          K    + ++L   ++     G ++ R   +TG
Sbjct: 11  NYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLSFEELFLFVKATIDEGIEKIR---ITG 67

Query: 93  GEPLLQVDVP-LIQALNK--RGFEIAVETNG 120
           GEPLL+ D+   I+ ++      ++A+ TNG
Sbjct: 68  GEPLLRKDLSIFIKMISDYKSDIDLAITTNG 98


>gi|86742041|ref|YP_482441.1| radical SAM family protein [Frankia sp. CcI3]
 gi|86568903|gb|ABD12712.1| Radical SAM [Frankia sp. CcI3]
          Length = 384

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 19/90 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C    V    T+  R  +D++  ++E+   TG+   R+   +
Sbjct: 85  CNL-----------ACDHC---IVESNPTRRERLTLDEVRSVLEQGQRTGK---RHVTFS 127

Query: 92  GGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           GGE  L   V    I    + G+ + VE+N
Sbjct: 128 GGEVFLYPQVMCQAIAHGVRLGYVVDVESN 157


>gi|312885416|ref|ZP_07745057.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311302114|gb|EFQ79142.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 317

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 17/88 (19%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT--GEKEGR 86
            S CNL            C +C    +G +      +     A    E           +
Sbjct: 20  LSTCNL-----------GCIYC---TMGSEDEIAYDHRPQTPAARFIELIAAVHAHTGLK 65

Query: 87  YCVLTGGEPLLQVDVP-LIQALNKRGFE 113
              LTGGEPLL  ++  +I  +   G  
Sbjct: 66  TIRLTGGEPLLYRELEAVISGIKALGIT 93


>gi|303233368|ref|ZP_07320037.1| radical SAM domain protein [Atopobium vaginae PB189-T1-4]
 gi|302480497|gb|EFL43588.1| radical SAM domain protein [Atopobium vaginae PB189-T1-4]
          Length = 368

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 49/138 (35%), Gaps = 36/138 (26%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           AG  A+F  F+GC L           +C FC    +  +G  G +    +LA+++ E   
Sbjct: 106 AGSGAIF--FTGCPL-----------RCVFCQNLRISQEGY-GKQITTARLAEIMLELQQ 151

Query: 80  TGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAV--ETNGTIEPPQGI----DWI 131
            G             PL         I    + G ++ +   T+G  E P+ +    D I
Sbjct: 152 QGALNINLVT-----PLHYAPHVRTAICMAKEAGLQLPIVCNTSG-YEKPETVAAMADVI 205

Query: 132 CV--------SPKAGCDL 141
            +        SPK    L
Sbjct: 206 DIWLPDMKFYSPKLASAL 223


>gi|296104196|ref|YP_003614342.1| 23S rRNA methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058655|gb|ADF63393.1| 23S rRNA methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 388

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 59/171 (34%), Gaps = 20/171 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG +     V+ G
Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVVMMG 181

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAGCDLK 142
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V+      L 
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA--LAISLH 239

Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                E++     +N            R  L+            + I Y  
Sbjct: 240 APN-DEIRDEIVPINKKYNIETFLAAVRRYLE----KSNANQGRVTIEYVM 285


>gi|262283214|ref|ZP_06060981.1| pyruvate formate-lyase-activating enzyme [Streptococcus sp.
           2_1_36FAA]
 gi|262261466|gb|EEY80165.1| pyruvate formate-lyase-activating enzyme [Streptococcus sp.
           2_1_36FAA]
          Length = 269

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 23/100 (23%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC++           +C++C   DT  +    ++    + D L + +  +   G
Sbjct: 37  VF--LQGCHM-----------RCQYCHNPDTWEMETNKSQLRTVD-DVLQEALRYKGFWG 82

Query: 82  EKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVET 118
            K G    ++GGE LLQ+D  LI       + G    ++T
Sbjct: 83  NKGG--ITVSGGEALLQIDF-LIAFFTKAKELGIHCTLDT 119


>gi|320009552|gb|ADW04402.1| Radical SAM domain protein [Streptomyces flavogriseus ATCC 33331]
          Length = 300

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 17/103 (16%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R + +C  C   F G +      +  D+  +L+    +  +       L GGEP +  D 
Sbjct: 21  RCNFECLHC---FHGKRLQHADAFTADEAINLLA--LMRDQYGTEAVTLLGGEPFVYRD- 74

Query: 102 PLIQ----ALNKRGFEIAVETNG------TIEPPQGIDWICVS 134
            L Q    A    G  + + TNG        E    +D + VS
Sbjct: 75  -LTQVVQYAKRDLGLRVEICTNGYRIERRLTEIAPDLDLLRVS 116


>gi|121607087|ref|YP_994894.1| radical SAM protein [Verminephrobacter eiseniae EF01-2]
 gi|205829923|sp|A1WE19|RLMN_VEREI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|121551727|gb|ABM55876.1| radical SAM enzyme, Cfr family [Verminephrobacter eiseniae EF01-2]
          Length = 391

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 41/117 (35%), Gaps = 22/117 (18%)

Query: 24  AVFC----RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEE 76
           AVF     R  G        Q   +  CRFC T   G          + QL      +  
Sbjct: 93  AVFIPEDER--G--TLCVSSQAGCAVGCRFCSTGHQGFSRNLSSGEIIAQLWFAEHALRR 148

Query: 77  QWITGEKEGRYCVLTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123
           +  T ++     V+ G GEPL Q    L+ AL       G+      + V T+G + 
Sbjct: 149 RLKTEDRVISNLVMMGMGEPL-QNLAALLPALRVMLDDHGYGLSRRRVTVSTSGVVP 204


>gi|62181614|ref|YP_218031.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62129247|gb|AAX66950.1| putative oxidase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322716097|gb|EFZ07668.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 391

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L+DL  +      +E +   + 
Sbjct: 19  PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVVWAQGREVKTIFIG 78

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L              EI +E N GT+E  + ID+
Sbjct: 79  GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 126


>gi|47566901|ref|ZP_00237619.1| molybdopterin cofactor biosynthesis protein A [Bacillus cereus
           G9241]
 gi|47556530|gb|EAL14863.1| molybdopterin cofactor biosynthesis protein A [Bacillus cereus
           G9241]
          Length = 306

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 8/71 (11%)

Query: 53  DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQAL-NKR 110
           D+  +Q         D++  L       G ++ R   LTGGEPLL+ D+P LI  L   +
Sbjct: 9   DYAFLQEEF--LLTFDEIERLARLFISMGVEKIR---LTGGEPLLRKDLPQLIARLTKLK 63

Query: 111 GFE-IAVETNG 120
           G + I + TNG
Sbjct: 64  GLKDIGLTTNG 74


>gi|296536473|ref|ZP_06898567.1| molybdenum cofactor biosynthesis protein A [Roseomonas cervicalis
           ATCC 49957]
 gi|296263200|gb|EFH09731.1| molybdenum cofactor biosynthesis protein A [Roseomonas cervicalis
           ATCC 49957]
          Length = 330

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+     K     +++L  L       G +  R   LTGGEPL+
Sbjct: 18  DRCDLRCVYCMAEDMTFL----PKAQILTLEELERLCGAFIGLGVERIR---LTGGEPLV 70

Query: 98  QVDV-PLIQALNKR-G----FEIAVETNGT 121
           + DV  L++ L  R G     E+ + TNGT
Sbjct: 71  RRDVMSLVRNLGARIGPGALRELTLTTNGT 100


>gi|289674339|ref|ZP_06495229.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
           syringae pv. syringae FF5]
          Length = 308

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           G   + +Q   +++E    G  +      +GGEPL+ Q    LI    + GF   + T+G
Sbjct: 12  GQELSTEQWFKVMQEAREMGAAQ---IGFSGGEPLVRQDLAELIAEARRLGFYTNLITSG 68


>gi|70731090|ref|YP_260831.1| molybdenum cofactor biosynthesis protein A [Pseudomonas fluorescens
           Pf-5]
 gi|68345389|gb|AAY92995.1| molybdenum cofactor biosynthesis protein A [Pseudomonas fluorescens
           Pf-5]
          Length = 365

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 10/62 (16%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+  Q        +++L  L E     G ++ R   LTGGEPL+
Sbjct: 56  DRCDFRCVYCMAEDMQFLPRQ----RILTLEELYQLAERFVALGTRKIR---LTGGEPLI 108

Query: 98  QV 99
           + 
Sbjct: 109 RP 110


>gi|325918112|ref|ZP_08180267.1| coproporphyrinogen III oxidase, anaerobic [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325535658|gb|EGD07499.1| coproporphyrinogen III oxidase, anaerobic [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 385

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 10/99 (10%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91
            L           +C +CD +   ++G       VD L   ++           + V   
Sbjct: 8   PLSLYVHLPWCVRKCPYCDFNSHAVKGVLPFEEYVDALIRDLDADLPLVWGRVVHSVFFG 67

Query: 92  GGEPLLQVDVPLIQALNKR--------GFEIAVETN-GT 121
           GG P L     + + L             EI +ETN GT
Sbjct: 68  GGTPSLFPAEAIDRLLQAAAARLRFAPNLEITLETNPGT 106


>gi|325967665|ref|YP_004243857.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28]
 gi|323706868|gb|ADY00355.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 353

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           LW        + +C +C   F          Y  ++L  LIE        E    +  GG
Sbjct: 2   LWLLFTTGACNLRCSYCGGSFEPHVVPWRITYENNKLKQLIER------DEDATVIFYGG 55

Query: 94  EPLLQVDVPL--IQALNKRGFEIAVETNGTIEPPQGIDW 130
           EPLL     +  +  +  R F I   TNGT+      D+
Sbjct: 56  EPLLNPGFIIWTMNNVKARRFGIQ--TNGTLVSLLPRDY 92


>gi|289191975|ref|YP_003457916.1| Wyosine base formation domain protein [Methanocaldococcus sp.
           FS406-22]
 gi|288938425|gb|ADC69180.1| Wyosine base formation domain protein [Methanocaldococcus sp.
           FS406-22]
          Length = 314

 Score = 36.2 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 70  LADLIEEQWITGEKEGRYCVLT-GGEPLLQV-DVPLIQALNKRGFEIAVETNG 120
           + D + E+      E ++  ++  GEP L      LI+  +K GF   V +NG
Sbjct: 113 VLDRVGEKKFKEALEPKHVAISLSGEPTLYPYLDELIKIFHKNGFTTFVVSNG 165


>gi|300245631|gb|ADJ93873.1| putative glycyl-radical enzyme activating protein [Clostridia
           bacterium enrichment culture clone BF]
          Length = 265

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 10/100 (10%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           G +  VD++   +EE      + G    ++GGEPL Q D    L++   +RG   A+ET 
Sbjct: 70  GEQMPVDEVVKRVEEDGAFFWRSGGGVTVSGGEPLQQSDFVAELLKTCRERGIHTALETC 129

Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
           G  +  + ++ +C    A  DL +    ++K + P  + +
Sbjct: 130 GHADW-ENVEKVC----AHADLIL---YDIKHIDPDRHQA 161


>gi|297526585|ref|YP_003668609.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255501|gb|ADI31710.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 259

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 15/92 (16%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL           +C+FC +        KG      Q+ + +    I  +++ RY  L
Sbjct: 48  GCNL-----------RCKFCWSWRYSFYTNKGFFQTPQQVYEKLTR--IAEKRKYRYIRL 94

Query: 91  TGGEPLLQ-VDVPLIQALNKRGFEIAV-ETNG 120
           +GGEP +    +  +  L  +   + + ETNG
Sbjct: 95  SGGEPTITMKHLLQLLELLDQTKFVFILETNG 126


>gi|157151404|ref|YP_001450926.1| pyruvate formate-lyase-activating enzyme [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|157076198|gb|ABV10881.1| pyruvate formate-lyase-activating enzyme [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 269

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 27/102 (26%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC++           +C++C   DT        +  +  +  + D+++E     
Sbjct: 37  VF--LQGCHM-----------RCQYCHNPDT-----WEMETNKSQLRTVDDVLQEALRYK 78

Query: 82  EKEGRY--CVLTGGEPLLQVDVPLIQAL---NKRGFEIAVET 118
              G      ++GGE LLQ+D  LI       + G    ++T
Sbjct: 79  GFWGNKGGITVSGGEALLQIDF-LIAFFTKAKELGIHCTLDT 119


>gi|149276170|ref|ZP_01882314.1| Elongator protein 3/MiaB/NifB [Pedobacter sp. BAL39]
 gi|149232690|gb|EDM38065.1| Elongator protein 3/MiaB/NifB [Pedobacter sp. BAL39]
          Length = 298

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
           + Q  +++E       +  +   LTGGEPL++ D   +I AL K   E+ + TNGT
Sbjct: 14  LMQPHEIMELAGTFVAQGVKKIRLTGGEPLVRKDAAAIISALGKLPVELVITTNGT 69


>gi|73748162|ref|YP_307401.1| radical SAM domain-containing protein [Dehalococcoides sp. CBDB1]
 gi|73659878|emb|CAI82485.1| radical SAM domain protein [Dehalococcoides sp. CBDB1]
          Length = 278

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 31  GCNLWSGREQDRLSAQC---------RFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           GCNL       +    C          F D  F   Q T     +  +L  L+E   +T 
Sbjct: 47  GCNLECKGCLCKKEINCMALEENLDVVFRDPRFCPPQ-TPSATLSFGKLVSLLENIELTE 105

Query: 82  EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG-TIEPPQGIDWICVSPKAGC 139
                     G E  L   +P + + L  RG ++ + TNG  +     ID + VS KA  
Sbjct: 106 ------VAFEGQEASLDPMLPDICRWLKDRGCKVILHTNGVAMADASHIDDVIVSLKAIT 159

Query: 140 D 140
            
Sbjct: 160 P 160


>gi|116670001|ref|YP_830934.1| molybdenum cofactor biosynthesis protein A [Arthrobacter sp. FB24]
 gi|116610110|gb|ABK02834.1| GTP cyclohydrolase subunit MoaA [Arthrobacter sp. FB24]
          Length = 347

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 21/106 (19%)

Query: 21  GRVAVFCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEE 76
           GR A   R S    CNL           +C +C     G++   K    + +++  ++  
Sbjct: 10  GRRATDMRLSLTDKCNL-----------RCTYC-MPAEGLEWLAKQAVMSAEEIVRIVR- 56

Query: 77  QWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRG--FEIAVETN 119
                    R   LTGGEPL+    + +I AL +      I++ TN
Sbjct: 57  -IGVDMLGVRELRLTGGEPLVRADLLDIISALRQAHPELPISMTTN 101


>gi|187735295|ref|YP_001877407.1| Radical SAM domain protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187425347|gb|ACD04626.1| Radical SAM domain protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 353

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 6/74 (8%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VP 102
           +  CR C    V            ++   LI++     E      VLTGG+P+++ D + 
Sbjct: 26  ALACRHC--RAVAQPRPHPDELTHEEALRLIDQL---AELRPPMLVLTGGDPVMRPDILE 80

Query: 103 LIQALNKRGFEIAV 116
           L++A + +G  +A+
Sbjct: 81  LVRAASGKGLHVAL 94


>gi|111220312|ref|YP_711106.1| putative radical activating enzyme [Frankia alni ACN14a]
 gi|111147844|emb|CAJ59508.1| putative radical activating enzyme [Frankia alni ACN14a]
          Length = 210

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 25/86 (29%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            GC           +  C  C   DT         G    + +L       W+       
Sbjct: 22  QGC-----------TIGCPGCMSLDT----WDPAGGSTTPIAELLA-----WLCERPGLT 61

Query: 87  YCVLTGGEPLLQ--VDVPLIQALNKR 110
              ++GGEP  Q      L++ L  +
Sbjct: 62  GVTISGGEPFQQPEPLGALLRGLRAQ 87


>gi|307266180|ref|ZP_07547723.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918784|gb|EFN49015.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 317

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C  +    +         +++  +I    I+ E   +    TGGEPL++  
Sbjct: 18  DRCNLRCIYCMPEEGIPKKDHNEILRNEEILKII---RISAELGIKKVRFTGGEPLVRKG 74

Query: 101 VP--LIQALNKRGFE-IAVETNGT 121
           +   + +    +G E IA+ TNGT
Sbjct: 75  IENIIYETSKIKGIEDIALTTNGT 98


>gi|302386178|ref|YP_003822000.1| Radical SAM domain protein [Clostridium saccharolyticum WM1]
 gi|302196806|gb|ADL04377.1| Radical SAM domain protein [Clostridium saccharolyticum WM1]
          Length = 337

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 18/90 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C+ C   +      K      ++   LI+E    G    R  + +
Sbjct: 11  CNL-----------KCKHC---YQDAGNKKTDELTTEEAKRLIDEIARAG---FRIMIFS 53

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           GGEPL++ D+  L+      G      TNG
Sbjct: 54  GGEPLMRPDIFTLVSYAAGAGLRPVFGTNG 83


>gi|167567356|ref|ZP_02360272.1| radical SAM domain protein [Burkholderia oklahomensis EO147]
 gi|167574503|ref|ZP_02367377.1| radical SAM domain protein [Burkholderia oklahomensis C6786]
          Length = 386

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 22/116 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R ++++    ++E             +
Sbjct: 38  CNL-----------ACNGCGKIDY--PDPILNQRLSIEECLQAVDECG------APVVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
            GGEPLL  ++P +++ + KR   + + TN  +   + +D    SP     + + G
Sbjct: 79  AGGEPLLHKEMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYQPSPYFVWSVHLDG 133


>gi|323351046|ref|ZP_08086703.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis
           VMC66]
 gi|322122770|gb|EFX94479.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis
           VMC66]
 gi|324991334|gb|EGC23267.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK353]
 gi|325687086|gb|EGD29109.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK72]
 gi|327462052|gb|EGF08381.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK1057]
 gi|327474565|gb|EGF19970.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK408]
 gi|328946888|gb|EGG41025.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK1087]
          Length = 269

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 27/102 (26%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC++           +C++C   DT        +  +  +  + D+++E     
Sbjct: 37  VF--LQGCHM-----------RCQYCHNPDT-----WEMETNKSQLRTVDDVLQEALRYK 78

Query: 82  EKEGRY--CVLTGGEPLLQVDVPLIQAL---NKRGFEIAVET 118
              G      ++GGE LLQ+D  LI       + G    ++T
Sbjct: 79  GFWGNKGGITVSGGEALLQIDF-LIAFFTKAKELGIHCTLDT 119


>gi|296198097|ref|XP_002746562.1| PREDICTED: molybdenum cofactor biosynthesis protein 1 [Callithrix
           jacchus]
          Length = 385

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGT-KGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C++C     G+Q T K      +++  L       G  + R   L
Sbjct: 80  CNL-----------RCQYC-MPEEGVQLTPKANLLTTEEILTLARLFVKEGVDKIR---L 124

Query: 91  TGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           TGGEPL++ D V ++  L +  G   I V TNG
Sbjct: 125 TGGEPLIRPDVVDIVAQLQQLEGLRTIGVTTNG 157


>gi|312194131|ref|YP_004014192.1| radical SAM domain protein [Frankia sp. EuI1c]
 gi|311225467|gb|ADP78322.1| Radical SAM domain protein [Frankia sp. EuI1c]
          Length = 387

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 8/118 (6%)

Query: 34  LWSGREQDRLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           L  GR    ++  C + C+  ++G++   G  ++     D +       +    +  LTG
Sbjct: 77  LNYGRASHEVNLGCNYDCEHCYLGLKKFDGLEWD-----DRVRLLHTIRDAGVLWLQLTG 131

Query: 93  GEPLLQVDVPLIQALN-KRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIKGGQE 148
           GEP++      + AL    G  I V +NG+     GI D +   P     L I G  E
Sbjct: 132 GEPMIDRHFSDVYALAFDLGMMIDVLSNGSRLANPGILDLLTRRPPHRITLSIYGATE 189


>gi|297585042|ref|YP_003700822.1| YfkB-like domain-containing protein [Bacillus selenitireducens
           MLS10]
 gi|297143499|gb|ADI00257.1| YfkB-like domain protein [Bacillus selenitireducens MLS10]
          Length = 372

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 13/92 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99
           +C  C   + G+         +D +   ++E      K  R   +TGGEP++      Q 
Sbjct: 42  RCEHCAVGY-GLLTKDPEPLPLDTIISRLDEV-----KHLRAFSITGGEPMMNLKQVKQY 95

Query: 100 DVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
            +PL++   +RG +  + +N T+   +  +WI
Sbjct: 96  VIPLLRYAKERGAKTQINSNLTMPL-ERYEWI 126


>gi|156937423|ref|YP_001435219.1| radical SAM domain-containing protein [Ignicoccus hospitalis
           KIN4/I]
 gi|156566407|gb|ABU81812.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 389

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 18/93 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   ++  +  +       + A  + E+ +  E      +L+
Sbjct: 46  CNL-----------RCLHC---YIRAKAQQDPSELTTEEAKRLSEEMV--EMRIPLVILS 89

Query: 92  GGEPLLQVDV-PLIQALNKRGF-EIAVETNGTI 122
           GGEPL++ D   +I+ + K  F ++++ TNGT+
Sbjct: 90  GGEPLVRKDFWEIIEPMAKAQFPKLSLSTNGTL 122


>gi|126466469|ref|YP_001041578.1| radical SAM domain-containing protein [Staphylothermus marinus F1]
 gi|126015292|gb|ABN70670.1| Radical SAM domain protein [Staphylothermus marinus F1]
          Length = 309

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 8/53 (15%)

Query: 90  LTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134
           LTGGEPL++ D+  ++  + + G  +++ TNG+           + +D I VS
Sbjct: 63  LTGGEPLIRDDIVDIVHEIRRVGGIVSITTNGSRLAEFAEKLAEEKVDHINVS 115


>gi|116255099|ref|YP_770933.1| molybdenum cofactor biosynthesis protein A [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115259747|emb|CAK02833.1| putative molybdenum cofactor biosynthesis protein A [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 350

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          K     +++L  L       G ++ R   LTGGEPL++ +
Sbjct: 40  DRCDFRCTYC-MAENMTFLPKKDLLTLEELNRLCSAFIAKGARKIR---LTGGEPLVRKN 95

Query: 101 VP-LIQALNKR---GF-EIAVETNGT 121
           +  L++ L ++   G  E+ + TNG+
Sbjct: 96  IMFLVRELGEKIGSGLDELTLTTNGS 121


>gi|150396791|ref|YP_001327258.1| molybdenum cofactor biosynthesis protein A [Sinorhizobium medicae
           WSM419]
 gi|166217890|sp|A6U9U3|MOAA_SINMW RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|150028306|gb|ABR60423.1| molybdenum cofactor biosynthesis protein A [Sinorhizobium medicae
           WSM419]
          Length = 349

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 10/87 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          K     +++L  L       G ++ R   LTGGEPL++ +
Sbjct: 38  DRCDFRCTYC-MAEHMTFLPKKDLLTLEELHRLCSAFIAKGVRKLR---LTGGEPLVRKN 93

Query: 101 VP-LIQAL---NKRGF--EIAVETNGT 121
           +  LI+ L    + G   E+ + TNG+
Sbjct: 94  IMFLIRELGKEIEAGRLDELTLTTNGS 120


>gi|108761479|ref|YP_634582.1| ribosomal RNA large subunit methyltransferase N [Myxococcus xanthus
           DK 1622]
 gi|122980702|sp|Q1CYE1|Y6459_MYXXD RecName: Full=Probable RNA methyltransferase MXAN_6459
 gi|108465359|gb|ABF90544.1| radical SAM domain protein [Myxococcus xanthus DK 1622]
          Length = 358

 Score = 36.2 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 13/100 (13%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG- 92
           +     Q   +  C FC T  +G +          ++ D + +     ++  R  V  G 
Sbjct: 104 VICVSSQVGCALACDFCMTGKLGFK----RNLQTWEILDQVLQVREEADRPVRGVVFMGM 159

Query: 93  GEPLLQVDVPLIQA---LNKRGFEIAVE-----TNGTIEP 124
           GEPLL     L  A    +  GF IA E     T G +  
Sbjct: 160 GEPLLNYKETLRAADILRHPAGFSIAGEAITFSTAGHVPA 199


>gi|303328185|ref|ZP_07358623.1| molybdenum cofactor biosynthesis protein A [Desulfovibrio sp.
           3_1_syn3]
 gi|302861515|gb|EFL84451.1| molybdenum cofactor biosynthesis protein A [Desulfovibrio sp.
           3_1_syn3]
          Length = 337

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 21/99 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL     +     +C                    +++A ++    I          LT
Sbjct: 23  CNLRCLYCRSNAKQRCI-----------PHEQVLRYEEMARMV---GIAASLGIGKVRLT 68

Query: 92  GGEPLL-----QVDVPLIQALNKRGFEIAVETNGTIEPP 125
           GGEP       Q    L          +   TNGT+  P
Sbjct: 69  GGEPFARKGCGQFLAMLHARFPDMDLRVT--TNGTLLEP 105


>gi|297158584|gb|ADI08296.1| putative radical activating enzyme [Streptomyces bingchenggensis
          BCW-1]
          Length = 240

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 20/71 (28%), Gaps = 15/71 (21%)

Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            GC L            C  C +         G    V  L +L       G       
Sbjct: 35 LQGCGL-----------ACAGCMSRHTW-DPQGGTSRTVASLLELWRAALAQGADG---L 79

Query: 89 VLTGGEPLLQV 99
           ++GGEPL Q 
Sbjct: 80 TVSGGEPLDQP 90


>gi|269125849|ref|YP_003299219.1| Radical SAM domain-containing protein [Thermomonospora curvata DSM
           43183]
 gi|268310807|gb|ACY97181.1| Radical SAM domain protein [Thermomonospora curvata DSM 43183]
          Length = 410

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 6/66 (9%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A   +        Q  +  R+ +D +A  I E     E      +L 
Sbjct: 44  CNLACDYCYMYEMADQGW------RRQPRRMSRHVLDHVAWRIAEHARANELPEVTVILH 97

Query: 92  GGEPLL 97
           GGEPLL
Sbjct: 98  GGEPLL 103


>gi|256810072|ref|YP_003127441.1| Wyosine base formation domain protein [Methanocaldococcus fervens
           AG86]
 gi|256793272|gb|ACV23941.1| Wyosine base formation domain protein [Methanocaldococcus fervens
           AG86]
          Length = 313

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 70  LADLIEEQWITGEKEGRYCVLT-GGEPLLQV-DVPLIQALNKRGFEIAVETNG 120
           + D + E+      E ++  ++  GEP L      LI+  +K GF   V +NG
Sbjct: 113 VLDRVGEKKFKEALEPKHVAISLSGEPTLYPYLDELIKIFHKNGFTTFVVSNG 165


>gi|212692834|ref|ZP_03300962.1| hypothetical protein BACDOR_02333 [Bacteroides dorei DSM 17855]
 gi|237724884|ref|ZP_04555365.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. D4]
 gi|265754729|ref|ZP_06089781.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
           3_1_33FAA]
 gi|212664623|gb|EEB25195.1| hypothetical protein BACDOR_02333 [Bacteroides dorei DSM 17855]
 gi|229436622|gb|EEO46699.1| pyruvate-formate lyase-activating enzyme [Bacteroides dorei
           5_1_36/D4]
 gi|263234843|gb|EEZ20411.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
           3_1_33FAA]
          Length = 302

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111
           G  Y  + L   IE++    ++ G      GGEPLL     LI  L + G
Sbjct: 101 GTEYTAEYLIHEIEKEIPFMDQSGGGVTFCGGEPLLHPKF-LIDMLKRCG 149


>gi|145595265|ref|YP_001159562.1| radical SAM domain-containing protein [Salinispora tropica CNB-440]
 gi|145304602|gb|ABP55184.1| Radical SAM domain protein [Salinispora tropica CNB-440]
          Length = 392

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 15/91 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           C L            CR          G      N +Q   L+ +    G     +  +T
Sbjct: 25  CPLAC--------LHCR-----ASARPGRDRAELNTEQATALMAQVAEFGRPAPLFV-IT 70

Query: 92  GGEPLLQVDVPLI-QALNKRGFEIAVETNGT 121
           GG+P  + D+ L+ +   + G  ++V  +GT
Sbjct: 71  GGDPFQRPDLELLVRRGTELGLPVSVSPSGT 101


>gi|15668431|ref|NP_247229.1| tRNA-modifying enzyme [Methanocaldococcus jannaschii DSM 2661]
 gi|2501613|sp|Q57705|Y257_METJA RecName: Full=UPF0026 protein MJ0257
 gi|159795677|pdb|2Z2U|A Chain A, Crystal Structure Of Archaeal Tyw1
 gi|1590987|gb|AAB98244.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 311

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 70  LADLIEEQWITGEKEGRYCVLT-GGEPLLQV-DVPLIQALNKRGFEIAVETNG 120
           + D + E+      E ++  ++  GEP L      LI+  +K GF   V +NG
Sbjct: 113 VLDRVGEKKFKEALEPKHVAISLSGEPTLYPYLDELIKIFHKNGFTTFVVSNG 165


>gi|167037275|ref|YP_001664853.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040032|ref|YP_001663017.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter sp.
           X514]
 gi|300914120|ref|ZP_07131436.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter sp.
           X561]
 gi|307724644|ref|YP_003904395.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter sp.
           X513]
 gi|320115692|ref|YP_004185851.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166854272|gb|ABY92681.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter sp.
           X514]
 gi|166856109|gb|ABY94517.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|300889055|gb|EFK84201.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter sp.
           X561]
 gi|307581705|gb|ADN55104.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter sp.
           X513]
 gi|319928783|gb|ADV79468.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 317

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C  +    +         +++  +I    I+ E   +    TGGEPL++  
Sbjct: 18  DRCNLRCIYCMPEEGIPKKDHNEILRNEEILKII---RISAELGIKKVRFTGGEPLVRKG 74

Query: 101 VP--LIQALNKRGFE-IAVETNGT 121
           +   + +    +G E IA+ TNGT
Sbjct: 75  IENIIYETSKIKGIEDIALTTNGT 98


>gi|328541980|ref|YP_004302089.1| Coenzyme PQQ biosynthesis protein E [Polymorphum gilvum
           SL003B-26A1]
 gi|326411730|gb|ADZ68793.1| Coenzyme PQQ biosynthesis protein E [Polymorphum gilvum
           SL003B-26A1]
          Length = 361

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 20/130 (15%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R   QC +C      ++       + D   D   +    G  +     L+GGEP L+ D+
Sbjct: 17  RCPLQCGYCSNPLELMKA--DRELSTDAWRDAFAQAADLGILQVH---LSGGEPTLRPDL 71

Query: 102 -PLIQALNKRGFEIAVETN------GTIE--PPQGIDWICVSPKAGCDL------KIKGG 146
             LI  L+ RG    + T       G +E     G+D + VS +           + +GG
Sbjct: 72  DALIAVLSARGVYTNLITAAVTLSRGKLEAYADAGLDHVQVSFQGARPETTELVGRYRGG 131

Query: 147 QELKLVFPQV 156
            E K    ++
Sbjct: 132 HEKKRAAARL 141


>gi|297587118|ref|ZP_06945763.1| molybdenum cofactor biosynthesis protein A [Finegoldia magna ATCC
           53516]
 gi|297575099|gb|EFH93818.1| molybdenum cofactor biosynthesis protein A [Finegoldia magna ATCC
           53516]
          Length = 315

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D+ + +C++C  +             +D+   ++E     G K+ R   LTGGEPL++  
Sbjct: 18  DKCNLRCKYCMPEEGITHLNHDEILTIDETLKIVEVFKDLGIKKVR---LTGGEPLVRNG 74

Query: 101 VP-LIQALNKRGF-EIAVETN 119
           +  L++ +   G  EI + TN
Sbjct: 75  ILNLVKGIKNMGIEEICMTTN 95


>gi|261343456|ref|ZP_05971101.1| molybdenum cofactor biosynthesis protein A [Providencia rustigianii
           DSM 4541]
 gi|282568603|gb|EFB74138.1| molybdenum cofactor biosynthesis protein A [Providencia rustigianii
           DSM 4541]
          Length = 326

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 7/83 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D  + +C +C    +       GR+    L ++        +       +TGGEP ++ D
Sbjct: 21  DVCNFRCTYC----LPDGYKPSGRHEFLTLDEIRRVSRAFADLGTEKVRITGGEPTMRKD 76

Query: 101 V-PLIQALNKRG--FEIAVETNG 120
              +I A+ +     +IAV TNG
Sbjct: 77  FSDIIAAIRENQSIKKIAVTTNG 99


>gi|237709522|ref|ZP_04540003.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
           9_1_42FAA]
 gi|229456578|gb|EEO62299.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
           9_1_42FAA]
          Length = 300

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111
           G  Y  + L   IE++    ++ G      GGEPLL     LI  L + G
Sbjct: 99  GTEYTAEYLIHEIEKEIPFMDQSGGGVTFCGGEPLLHPKF-LIDMLKRCG 147


>gi|254171904|ref|ZP_04878580.1| Fe-S protein, radical SAM family [Thermococcus sp. AM4]
 gi|214033800|gb|EEB74626.1| Fe-S protein, radical SAM family [Thermococcus sp. AM4]
          Length = 361

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 15/105 (14%)

Query: 31  GCNLWSGREQ------DRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           GC L    E+       +    C +C  + +            V  + D+IEE  I   K
Sbjct: 18  GCQLCVRGEKLVLFTTGKCPRDCFYCPLSPWRREDVVYANERPVKSVDDIIEEAMIQEAK 77

Query: 84  EGRYCVLTGGEPLLQVDVPL--IQALNK---RGFEIAVETNGTIE 123
                 +TGG+PL ++D  +  I+AL +     F + + T G + 
Sbjct: 78  GAG---VTGGDPLARLDRTVQYIRALKENFGEDFHVHLYTTGALA 119


>gi|254166575|ref|ZP_04873429.1| hypothetical protein ABOONEI_1667 [Aciduliprofundum boonei T469]
 gi|197624185|gb|EDY36746.1| hypothetical protein ABOONEI_1667 [Aciduliprofundum boonei T469]
          Length = 279

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQ 105
           C FC      +   +        +  +I+      E       L GGEP L+ D + +I+
Sbjct: 3   CPFC-----NVWNDRTPELPTKDVFKIIDRL---AESTVTVLSLEGGEPTLRKDILDIIK 54

Query: 106 ALNKRGFEIAVETNGTI 122
             + + F + + TNGT+
Sbjct: 55  YAHDQSFYLFMTTNGTL 71


>gi|194018050|ref|ZP_03056656.1| YfkA [Bacillus pumilus ATCC 7061]
 gi|194010295|gb|EDW19871.1| YfkA [Bacillus pumilus ATCC 7061]
          Length = 373

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 86  RYCVLTGGEPLLQVD------VPLIQALNKRGFEIAVETNGTIEP 124
           R   +TGGEP+L +       VPL++  ++RG    + +N T++ 
Sbjct: 79  RSISITGGEPMLSLKSVREYVVPLLKYAHERGVRTQINSNLTLDL 123


>gi|150388420|ref|YP_001318469.1| glycyl-radical activating family protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149948282|gb|ABR46810.1| glycyl-radical enzyme activating protein family [Alkaliphilus
           metalliredigens QYMF]
          Length = 297

 Score = 36.2 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 44/139 (31%), Gaps = 44/139 (31%)

Query: 24  AVFCRFSGCNLWSGREQDRLSA-----------QCRFC----DT---------------- 52
            VF    GC L      +  S            +C  C    DT                
Sbjct: 23  TVF--LKGCPLNCWWCHNPESKDRKQQILFTQQRCIHCGSCHDTCSQKAIQEGKINGENC 80

Query: 53  -------DFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-- 101
                  D    +  +  G    V ++   IE+  I  E+       +GGEPL Q +   
Sbjct: 81  TLCNKCVDRCPTEALELVGKDMTVAEVMGEIEKDRIFFEQSKGGVTFSGGEPLSQGEFLY 140

Query: 102 PLIQALNKRGFEIAVETNG 120
            L++   ++G    V+T+G
Sbjct: 141 ELLRVCGQKGIHRGVDTSG 159


>gi|324009633|gb|EGB78852.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           57-2]
          Length = 352

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 45  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 100

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 101 RDFTDIIAAVRENNTIRQIAVTTNG 125


>gi|284166232|ref|YP_003404511.1| Wyosine base formation domain protein [Haloterrigena turkmenica DSM
           5511]
 gi|284015887|gb|ADB61838.1| Wyosine base formation domain protein [Haloterrigena turkmenica DSM
           5511]
          Length = 345

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 21/107 (19%)

Query: 38  REQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADL-----------------IEEQW 78
               R + +C FC  D      +       + + + D                  +  + 
Sbjct: 76  TPVVRCNERCVFCWRDHQGHTYEMDDVEWDDPEAVVDASIRLQKKLLSGFGGNDEVPREV 135

Query: 79  ITGEKEGRYCVLT-GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
                E R+  ++  GEP L   +P LI+A   R     + +NGT  
Sbjct: 136 FEQAMEPRHVAISLDGEPTLYPYLPELIEAFRDRDITTFLVSNGTRP 182


>gi|220928570|ref|YP_002505479.1| radical SAM protein [Clostridium cellulolyticum H10]
 gi|219998898|gb|ACL75499.1| Radical SAM domain protein [Clostridium cellulolyticum H10]
          Length = 362

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 13/100 (13%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       R    C             +  +    +  ++  E    G     + +L 
Sbjct: 71  CNLRCSGCYARELHSCS---------DEVRDSQMTCQRWNEIFREAESLG---ISFILLA 118

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           GGEPL++ DV +++A + +     + TNG +     ID  
Sbjct: 119 GGEPLMRRDV-VVKAADSKNIIFPIFTNGLLMNNFYIDLF 157


>gi|91204397|emb|CAJ70897.1| similar to molybdenum cofactor biosynthesis protein A [Candidatus
           Kuenenia stuttgartiensis]
          Length = 335

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 87  YCVLTG-GEPLLQV-DVPLIQALNKRGFEIAVETNG 120
              LTG GEPLL    + +I     +G ++ + TNG
Sbjct: 77  NVTLTGWGEPLLHPQLMEMIAYTKNKGHKVGLTTNG 112


>gi|86359709|ref|YP_471600.1| hypothetical protein RHE_PA00004 [Rhizobium etli CFN 42]
 gi|86283811|gb|ABC92873.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 360

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 7/86 (8%)

Query: 50  CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL----IQ 105
           CD     +      +Y+VD L D          +  R   ++GGEPLL          + 
Sbjct: 94  CD-QLCVMCSQPPKKYHVD-LFDQFTVAATLAPENAR-ITISGGEPLLHKRRLFQFLAVA 150

Query: 106 ALNKRGFEIAVETNGTIEPPQGIDWI 131
           A  +      V TNG    P  I  I
Sbjct: 151 AKARPDISFHVLTNGQFFEPGDIAII 176


>gi|58038709|ref|YP_190673.1| lysine 2,3-aminomutase [Gluconobacter oxydans 621H]
 gi|58001123|gb|AAW60017.1| Lysine 2,3-aminomutase [Gluconobacter oxydans 621H]
          Length = 356

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 47  CRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
           CRFC   F     G  GG  +  QL   ++  W+    + R  +LTGG+PL+     L  
Sbjct: 121 CRFC---FRREHVGPGGGLLSNAQLETALD--WVRQHPDIREIILTGGDPLMLAPRRLKH 175

Query: 106 ALNKRGFEIAVET 118
            +        +ET
Sbjct: 176 IVQSLSGIPHIET 188


>gi|325696320|gb|EGD38211.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK160]
          Length = 269

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 27/102 (26%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC++           +C++C   DT        +  +  +  + D+++E     
Sbjct: 37  VF--LQGCHM-----------RCQYCHNPDT-----WEMETNKSQLRTVDDVLQEALRYK 78

Query: 82  EKEGRY--CVLTGGEPLLQVDVPLIQAL---NKRGFEIAVET 118
              G      ++GGE LLQ+D  LI       + G    ++T
Sbjct: 79  GFWGNKGGITVSGGEALLQIDF-LIAFFTKAKELGIHCTLDT 119


>gi|324993692|gb|EGC25611.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK405]
 gi|324994995|gb|EGC26908.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK678]
 gi|327462962|gb|EGF09283.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK1]
          Length = 269

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 27/102 (26%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           VF    GC++           +C++C   DT        +  +  +  + D+++E     
Sbjct: 37  VF--LQGCHM-----------RCQYCHNPDT-----WEMETNKSQLRTVDDVLQEALRYK 78

Query: 82  EKEGRY--CVLTGGEPLLQVDVPLIQAL---NKRGFEIAVET 118
              G      ++GGE LLQ+D  LI       + G    ++T
Sbjct: 79  GFWGNKGGITVSGGEALLQIDF-LIAFFTKAKELGIHCTLDT 119


>gi|222837080|gb|EEE75459.1| predicted protein [Populus trichocarpa]
          Length = 498

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 33  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFARLGTEKVR---LTGGEPSLR 88

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 89  RDFTDIIAAVRENDAIRQIAVTTNG 113


>gi|124485146|ref|YP_001029762.1| hypothetical protein Mlab_0319 [Methanocorpusculum labreanum Z]
 gi|124362687|gb|ABN06495.1| Radical SAM domain protein [Methanocorpusculum labreanum Z]
          Length = 491

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           L +    +R + +C FC   F   +          D++  ++                +G
Sbjct: 92  LANIDVTNRCNLKCEFC---FANARACGYIYEPTFDEITSMLALLRNEKPVPCPAVQFSG 148

Query: 93  GEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
           GEP ++ D+  LI+   + GF ++ + +NG
Sbjct: 149 GEPTMRDDLVDLIKKARELGFSQVQMASNG 178


>gi|14589981|ref|NP_142042.1| hypothetical protein PH0020 [Pyrococcus horikoshii OT3]
 gi|3256405|dbj|BAA29088.1| 238aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 238

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 16/70 (22%)

Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            GCNL           +C FC  ++   QG    + N ++L   ++      +      
Sbjct: 24 LCGCNL-----------RCPFC-HNWRIAQGEGCFKLNREELIAEVDANSFLVDCFH--- 68

Query: 89 VLTGGEPLLQ 98
           +TGGEPL+Q
Sbjct: 69 -ITGGEPLIQ 77


>gi|219667931|ref|YP_002458366.1| radical SAM protein [Desulfitobacterium hafniense DCB-2]
 gi|219538191|gb|ACL19930.1| Radical SAM domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 441

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 18/95 (18%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL           +C  C   F+     +       +         +          L
Sbjct: 106 GCNL-----------RCPVC---FMAANDFRPDPNPSLEALGEKYRYILRHTNPDTSIQL 151

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVE--TNGTI 122
           TGGEP  + D+  +I+   + GF+ A+E  TNG +
Sbjct: 152 TGGEPTTREDLADIIRLGREIGFQ-AIEVNTNGVV 185


>gi|325295010|ref|YP_004281524.1| molybdenum cofactor biosynthesis protein A [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065458|gb|ADY73465.1| molybdenum cofactor biosynthesis protein A [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 324

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 12/94 (12%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL--ADLIEEQWITGEKEGRYCVL 90
           N       DR + +CR+C       +GTK    + + L   ++ E   +  E       L
Sbjct: 5   NYLRISVTDRCNFRCRYC-----MPEGTKKFIPHSEILRYEEITEIVRVFTEFGIDSVRL 59

Query: 91  TGGEPL----LQVDVPLIQALNKRGFEIAVETNG 120
           TGGEPL    ++  +  I+ L +   +I++ TNG
Sbjct: 60  TGGEPLVRKGIESLIVQIRELEEI-RDISLTTNG 92


>gi|291086451|ref|ZP_06355845.2| hypothetical protein CIT292_10523 [Citrobacter youngae ATCC
          29220]
 gi|291068291|gb|EFE06400.1| arylsulfatase regulator [Citrobacter youngae ATCC 29220]
          Length = 370

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 4/68 (5%)

Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
          +GC + +     R +  CR+C      I        +   LA  I +             
Sbjct: 2  TGCQVMAKPASSRCNLDCRYC----FYIDKPTQPEMDDATLAAFIRQHIAAQPGPEVMFA 57

Query: 90 LTGGEPLL 97
            GGEP L
Sbjct: 58 WQGGEPTL 65


>gi|115351754|ref|YP_773593.1| hypothetical protein Bamb_1702 [Burkholderia ambifaria AMMD]
 gi|115281742|gb|ABI87259.1| conserved hypothetical protein [Burkholderia ambifaria AMMD]
          Length = 292

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 27/128 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL                      +        +++   DL +   +   +  +     
Sbjct: 49  CNLTCAECCSLSPL-----------LPEWYASPESIES--DLRKAAKVLSPRIFKLV--- 92

Query: 92  GGEPLLQV-DVPLIQALNKRGF--EIAVETNGTI--EPP----QGIDWICVS--PKAGCD 140
           GGEPLL    V L++ +   G   EI+V TNG    E P    Q +D + +S  PK    
Sbjct: 93  GGEPLLHPALVELVERVRGTGIAPEISVTTNGLKLGEMPDAFWQAVDALTISRYPKPALS 152

Query: 141 LKIKGGQE 148
             +    E
Sbjct: 153 PDLIAHVE 160


>gi|91201364|emb|CAJ74424.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 335

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 19/90 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C    +  + +  G   ++ L  ++      G     Y   T
Sbjct: 12  CNL-----------SCHHC----LDGRHSGDGNLKIEILERILRNARRHGFD---YISFT 53

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           GGEP L      ++  ++K G+     TNG
Sbjct: 54  GGEPTLHPGFTEMLTMVSKAGYNFGFVTNG 83


>gi|254880766|ref|ZP_05253476.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
           4_3_47FAA]
 gi|319639776|ref|ZP_07994506.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 3_1_40A]
 gi|254833559|gb|EET13868.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
           4_3_47FAA]
 gi|317388593|gb|EFV69442.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 3_1_40A]
          Length = 302

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111
           G  Y  + L   IE++    ++ G      GGEPLL  +  LI  L + G
Sbjct: 101 GTEYTAEYLMHEIEKEIPFMDQSGGGVTFCGGEPLLHPEF-LIDILKRCG 149


>gi|238928042|ref|ZP_04659802.1| radical SAM domain protein [Selenomonas flueggei ATCC 43531]
 gi|238884002|gb|EEQ47640.1| radical SAM domain protein [Selenomonas flueggei ATCC 43531]
          Length = 361

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 17/87 (19%)

Query: 46  QCRFC-----DT--DFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLT---GGE 94
            C +C     DT          +       D+L ++I +    G K      LT   GGE
Sbjct: 42  HCAYCTYGSGDTYQKTENRDSIEHRDMIPWDKLQEIIADMGAMGVKA-----LTFSGGGE 96

Query: 95  PLLQVDV-PLIQALNKRGFEIAVETNG 120
           PL    +   +Q +   G ++++ TNG
Sbjct: 97  PLTYPHIREAVQQVKSHGIDLSLITNG 123


>gi|157691530|ref|YP_001485992.1| thioredoxin [Bacillus pumilus SAFR-032]
 gi|157680288|gb|ABV61432.1| possible thioredoxin [Bacillus pumilus SAFR-032]
          Length = 373

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 86  RYCVLTGGEPLLQVD------VPLIQALNKRGFEIAVETNGTIEP 124
           R   +TGGEP+L +       VPL++  ++RG    + +N T++ 
Sbjct: 79  RSISITGGEPMLSLKSVREYVVPLLKYAHERGVRTQINSNLTLDL 123


>gi|308070036|ref|YP_003871641.1| Molybdenum cofactor biosynthesis protein A (narA protein)
           [Paenibacillus polymyxa E681]
 gi|305859315|gb|ADM71103.1| Molybdenum cofactor biosynthesis protein A (narA protein)
           [Paenibacillus polymyxa E681]
          Length = 337

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 11/105 (10%)

Query: 41  DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +CR+C   +  G       +  +    ++     I          +TGGEPLL+ 
Sbjct: 22  DRCNFRCRYCMPEEIFGHDYPFLPKEKILTFEEITRLSRIFVSLGVTKLRITGGEPLLRK 81

Query: 100 DVP-LIQALNKR-GFE-IAVETNGTIEP-------PQGIDWICVS 134
           D+  LI +L +  G E IA+ TNG   P         G+  + VS
Sbjct: 82  DLSLLIHSLTQLDGVEDIAMTTNGVFLPKYAVALREAGLKRVTVS 126


>gi|170769101|ref|ZP_02903554.1| molybdenum cofactor biosynthesis protein A [Escherichia albertii
           TW07627]
 gi|170122173|gb|EDS91104.1| molybdenum cofactor biosynthesis protein A [Escherichia albertii
           TW07627]
          Length = 329

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 19/137 (13%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77

Query: 99  VD-VPLIQALNKRG--FEIAVETNG-------TIEPPQGIDWICVSP---KAGCDLKIKG 145
            D + +I A+ +     +IAV TNG             G+  I VS     A     I G
Sbjct: 78  RDFIDIIAAVRENDAIRQIAVTTNGYRLERDVANWRDAGLTGINVSVDSLDARQFHAITG 137

Query: 146 GQELKLVFPQVNVSPEN 162
             + + V   ++ + E 
Sbjct: 138 QDKFRQVMAGIDAAFEA 154


>gi|166031166|ref|ZP_02233995.1| hypothetical protein DORFOR_00852 [Dorea formicigenerans ATCC
           27755]
 gi|166029013|gb|EDR47770.1| hypothetical protein DORFOR_00852 [Dorea formicigenerans ATCC
           27755]
          Length = 464

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 27/103 (26%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD--QLADLIEEQWITGEKEGRY-- 87
           CNL            CR+C       +G   GR  +   ++     +  I      R   
Sbjct: 116 CNL-----------ACRYC----FAEEGEYHGRRALMSYEVGKKALDFLIANSGSRRNLE 160

Query: 88  CVLTGGEPLL--QVDVPLI------QALNKRGFEIAVETNGTI 122
               GGEPL+  QV   L+      + L+ + F   V TNG +
Sbjct: 161 VDFFGGEPLMNWQVVKDLVAYGREQEKLHDKNFRFTVTTNGVL 203


>gi|160944519|ref|ZP_02091747.1| hypothetical protein FAEPRAM212_02032 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444301|gb|EDP21305.1| hypothetical protein FAEPRAM212_02032 [Faecalibacterium prausnitzii
           M21/2]
          Length = 325

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 18/91 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR+C    +     K  R  V    + +    +  +       +T
Sbjct: 20  CNL-----------RCRYC----MPDGVEKLEREAVLTYEEFLRLAALFAQCGIDTVRVT 64

Query: 92  GGEPLLQVDVP-LIQALNK-RGF-EIAVETN 119
           GGEPL++ +V  L+  L    G   + + TN
Sbjct: 65  GGEPLVRKNVAQLVAGLKATPGIRRVTLTTN 95


>gi|91787237|ref|YP_548189.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Polaromonas sp. JS666]
 gi|91696462|gb|ABE43291.1| Putative oxygen-independent coproporphyrinogen III oxidase
           [Polaromonas sp. JS666]
          Length = 394

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 10/101 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91
            L           +C +CD +   + G    +  +D L   +E           + + + 
Sbjct: 20  PLSLYVHLPWCLKKCPYCDFNSHEVSGEMPEQRYLDALIADLEAALPLVWGRTVHSIFIG 79

Query: 92  GGEPLL---QVDVPLI-----QALNKRGFEIAVETN-GTIE 123
           GG P L   Q    L+     +   +   EI +E N GT E
Sbjct: 80  GGTPSLFSPQAIDRLLGDIRARLRLEADCEITLEANPGTFE 120


>gi|310830987|ref|YP_003966088.1| Anaerobic ribonucleoside-triphosphate reductase activating protein
           [Paenibacillus polymyxa SC2]
 gi|309250454|gb|ADO60020.1| Anaerobic ribonucleoside-triphosphate reductase activating protein
           [Paenibacillus polymyxa SC2]
          Length = 112

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 9/53 (16%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI---QALNKRGFEI 114
            + +++A+ + +          +   +GGEP  Q +  LI   + L  +G  I
Sbjct: 1   MSTNEVAEHVLQ------NPINHVTFSGGEPFSQNEKELIYLAKELKNKGRNI 47


>gi|308270291|emb|CBX26903.1| hypothetical protein N47_A09320 [uncultured Desulfobacterium sp.]
          Length = 370

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 16/70 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL     +           T + G   TK     VDQ+A                 +LT
Sbjct: 31  CNLACIHCRASALN------TSYTGELDTKASFKLVDQIA----------VAGNPIVILT 74

Query: 92  GGEPLLQVDV 101
           GGEPLL+ D+
Sbjct: 75  GGEPLLRPDI 84


>gi|226311750|ref|YP_002771644.1| hypothetical protein BBR47_21630 [Brevibacillus brevis NBRC 100599]
 gi|226094698|dbj|BAH43140.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 371

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 38/165 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C   DT              VD +   ++E      K+     +T
Sbjct: 41  CNLRC--------EHCAVGDTLRYKDDPA----LPVDLILRRLDEA-----KDLLTLSIT 83

Query: 92  GGEPLLQVDV------PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
           GGEP+           P++Q    RG    + +N ++   +             +L +  
Sbjct: 84  GGEPMYSERTVKTVIAPILQYAADRGLRTQINSNMSMPFSR------------YELILPY 131

Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAIS 190
              + + +     +PE +    + + + QP+     E   +  I 
Sbjct: 132 IDVMHISWNWS--TPEEFHDIVYAK-ARQPVSMKRAEAQFHEMIE 173


>gi|218134604|ref|ZP_03463408.1| hypothetical protein BACPEC_02507 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989989|gb|EEC56000.1| hypothetical protein BACPEC_02507 [Bacteroides pectinophilus ATCC
           43243]
          Length = 354

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQ 98
           D    +C+ C   F G   ++       Q+ +++   E +     +  Y  +TGG+P+L 
Sbjct: 16  DECDQRCKHCYI-FSGKGCSELKSMTWKQMQEVVANCEDFCRIYNKLPYFYITGGDPILH 74

Query: 99  VDV-PLIQALNKRGFEIAV 116
            D   L+  L  RG    +
Sbjct: 75  PDFWKLMVLLKSRGIPFTI 93


>gi|260836709|ref|XP_002613348.1| hypothetical protein BRAFLDRAFT_118735 [Branchiostoma floridae]
 gi|229298733|gb|EEN69357.1| hypothetical protein BRAFLDRAFT_118735 [Branchiostoma floridae]
          Length = 657

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 18/89 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C++C     G+  T   +  + +++  L       G  + R   L
Sbjct: 88  CNL-----------RCQYC-MPEAGVDLTPKQKLLSTEEVVTLARLFVSQGVNKIR---L 132

Query: 91  TGGEPLLQVD-VPLIQALNKRGFEIAVET 118
           TGGEPL++ D V ++  LNK    + +ET
Sbjct: 133 TGGEPLVRPDVVDIVSELNKL-RSLGLET 160


>gi|154503581|ref|ZP_02040641.1| hypothetical protein RUMGNA_01405 [Ruminococcus gnavus ATCC 29149]
 gi|260589910|ref|ZP_05855823.1| putative arylsulfatase regulator [Blautia hansenii DSM 20583]
 gi|153795681|gb|EDN78101.1| hypothetical protein RUMGNA_01405 [Ruminococcus gnavus ATCC 29149]
 gi|260539717|gb|EEX20286.1| putative arylsulfatase regulator [Blautia hansenii DSM 20583]
          Length = 435

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 24/101 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDF--VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           CNL            C +C   +   G + T+  +   D+    +  Q      +  Y  
Sbjct: 94  CNL-----------ACIYC---YEGAGCRTTRMNKATADRFIGFMINQAKARNSKSMYIN 139

Query: 90  LTGGEPLLQVDVPL--IQALNKRGFEIAVE------TNGTI 122
           L GGEPLL ++     + AL K   E  +E      TNGT+
Sbjct: 140 LFGGEPLLNIECGFYILDALKKFCAEKNIEFASGIITNGTL 180


>gi|86750500|ref|YP_486996.1| molybdenum cofactor biosynthesis protein A [Rhodopseudomonas
           palustris HaA2]
 gi|86573528|gb|ABD08085.1| GTP cyclohydrolase subunit MoaA [Rhodopseudomonas palustris HaA2]
          Length = 345

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+     +     +++L  L     + G ++ R   LTGGEPL+
Sbjct: 34  DRCDFRCAYCMSEDMTFL----PRADLLTLEELDRLCSAFIVRGVRKLR---LTGGEPLV 86

Query: 98  QVD-VPLIQAL---NKRG--FEIAVETNGT 121
           + + + L+++L      G   E+ + TNG+
Sbjct: 87  RRNMMSLVRSLSRHLDTGALRELTLTTNGS 116


>gi|119775502|ref|YP_928242.1| ribosomal RNA large subunit methyltransferase N [Shewanella
           amazonensis SB2B]
 gi|205829877|sp|A1S866|RLMN_SHEAM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|119768002|gb|ABM00573.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 373

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 59/178 (33%), Gaps = 34/178 (19%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI----------TGEKEG 85
               Q   + +C FC T   G             +++++ + W           TGE+  
Sbjct: 107 CVSSQVGCALECTFCSTAQQGFN-------RNLTVSEIVGQIWRVSHFLGFQKETGERPI 159

Query: 86  RYCVLTG-GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSP 135
              V+ G GEPLL +   VP +   L+  GF      + + T+G +     + D I V+ 
Sbjct: 160 SNVVMMGMGEPLLNLANVVPAMNIMLDDYGFGLSKRRVTLSTSGVVPALDKLGDVIDVA- 218

Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
                +      EL+ V   +N            R  L+            + + Y  
Sbjct: 219 -LAVSIHAPN-DELRDVLVPINKKYPLQEFLAAIRRYLE----KSNANRGRVTLEYVM 270


>gi|315640725|ref|ZP_07895827.1| pyruvate formate-lyase activating enzyme [Enterococcus italicus DSM
           15952]
 gi|315483480|gb|EFU73974.1| pyruvate formate-lyase activating enzyme [Enterococcus italicus DSM
           15952]
          Length = 255

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 23/103 (22%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC             +C+FC   DT +         R   D LA+ ++ Q  
Sbjct: 23  VRFVIFSQGC-----------RMRCQFCHNPDT-WKIDDPKASLRSADDVLAEALKYQSY 70

Query: 80  TGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120
            GEK G    ++GGEP   L   + L +    +G    ++T G
Sbjct: 71  WGEKGG--ITVSGGEPLLQLDFLLDLFKKAKAKGIHTTIDTCG 111


>gi|294778024|ref|ZP_06743458.1| glycyl-radical enzyme activating family protein [Bacteroides
           vulgatus PC510]
 gi|294448082|gb|EFG16648.1| glycyl-radical enzyme activating family protein [Bacteroides
           vulgatus PC510]
          Length = 302

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111
           G  Y  + L   IE++    ++ G      GGEPLL  +  LI  L + G
Sbjct: 101 GTEYTAEYLMHEIEKEIPFMDQSGGGVTFCGGEPLLHPEF-LIDILKRCG 149


>gi|239993006|ref|ZP_04713530.1| molybdenum cofactor biosynthesis protein A [Alteromonas macleodii
           ATCC 27126]
          Length = 322

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 29/147 (19%)

Query: 46  QCRFCDTDFVGIQGTKGGR----YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           +C++C        G +G        ++++  L++     G  + R   LTGGEP L+ D 
Sbjct: 24  RCQYC-----LPDGYEGPTSDQFMTLNEIDTLLKAFAKLGTSKVR---LTGGEPTLRRDF 75

Query: 102 PLIQALNKR--GFE-IAVETNGTI-------EPPQGIDWICVS-----PKAGCDLKIKGG 146
             I  L     G E +A+ T+G             G+  + VS     P+      I G 
Sbjct: 76  LDILRLTSNTPGIERVAMTTHGARMEKFAHQWKEAGLHQVNVSIDSLDPRQFA--AITGQ 133

Query: 147 QELKLVFPQVNVSPENYIGFDFERFSL 173
            +LK V   ++ + +  +        L
Sbjct: 134 DKLKAVLRGLDAAIDAGLDVKVNSVLL 160


>gi|225376307|ref|ZP_03753528.1| hypothetical protein ROSEINA2194_01945 [Roseburia inulinivorans DSM
           16841]
 gi|225211953|gb|EEG94307.1| hypothetical protein ROSEINA2194_01945 [Roseburia inulinivorans DSM
           16841]
          Length = 306

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKR-GFE-IAVETN 119
           G+  +    ++++   I      +   LTGGEPL++  V  LI  L +  G E + + TN
Sbjct: 10  GQEELLTYDEIVKLAGIYRSLGIKNVKLTGGEPLVREHVDELIFRLKEECGMEKVTLTTN 69

Query: 120 GTIEPPQGID 129
           G I   Q +D
Sbjct: 70  G-ILLEQQLD 78


>gi|222102888|ref|YP_002539927.1| molybdenum cofactor biosynthesis protein A [Agrobacterium vitis S4]
 gi|221739489|gb|ACM40222.1| molybdenum cofactor biosynthesis protein A [Agrobacterium vitis S4]
          Length = 342

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 22/109 (20%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           GR   + R S          DR   +C +C          K    ++D+L  L      +
Sbjct: 19  GRRVTYLRLS--------VTDRCDLRCMYC-MPENMTFMPKRDVLSIDELERLAVAFIRS 69

Query: 81  GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF--------EIAVETNGT 121
           G    R   LTGGEPL++  +  I  +   G         E+ + TNGT
Sbjct: 70  GVTRIR---LTGGEPLVRKGI--IDLIRSLGRNLQGGPLQELTLTTNGT 113


>gi|150003986|ref|YP_001298730.1| pyruvate-formate lyase-activating enzyme [Bacteroides vulgatus ATCC
           8482]
 gi|149932410|gb|ABR39108.1| pyruvate-formate lyase-activating enzyme [Bacteroides vulgatus ATCC
           8482]
          Length = 302

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111
           G  Y  + L   IE++    ++ G      GGEPLL  +  LI  L + G
Sbjct: 101 GTEYTAEYLMHEIEKEIPFMDQSGGGVTFCGGEPLLHPEF-LIDILKRCG 149


>gi|114607310|ref|XP_001173946.1| PREDICTED: molybdenum cofactor synthesis-step 1 protein isoform 4
           [Pan troglodytes]
          Length = 620

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +       K      +++  L       G  + R   LT
Sbjct: 80  CNL-----------RCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGVDKIR---LT 125

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GGEPL++ D V ++  L +  G   I V TNG
Sbjct: 126 GGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNG 157


>gi|87200079|ref|YP_497336.1| coproporphyrinogen III oxidase [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135760|gb|ABD26502.1| Putative oxygen-independent coproporphyrinogen III oxidase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 384

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            L          A+C +CD +      T    +    LAD+  E  +T  +        G
Sbjct: 3   PLALYVHWPFCLAKCPYCDFNSHVRARTDIAAWQAALLADMRHEARLTPGRPLSSIFFGG 62

Query: 93  GEPLLQVDVPLIQALNKR---------GFEIAVETN 119
           G P L     L++AL            G EI +E N
Sbjct: 63  GTPSLMP-PALVEALLAEAERLWGFAPGIEITLEAN 97


>gi|91774113|ref|YP_566805.1| molybdenum cofactor biosynthesis protein A [Methanococcoides
           burtonii DSM 6242]
 gi|91713128|gb|ABE53055.1| Molybdenum cofactor biosynthesis protein A [Methanococcoides
           burtonii DSM 6242]
          Length = 318

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 26/111 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C               +   ++ ++      G  + ++   +
Sbjct: 27  CNL-----------DCIYC---HSEGDEGSRKEMSAKTISVIVSAAAKFGVNKVKF---S 69

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS 134
           GGEPL++ D   +++ L K   +++V TNG             G+D + VS
Sbjct: 70  GGEPLVRKDFEDILRKLPKL-KDVSVTTNGVFLKERAFSLKEAGLDRVNVS 119


>gi|86605975|ref|YP_474738.1| anaerobic ribonucleotide reductase activating protein
           [Synechococcus sp. JA-3-3Ab]
 gi|86554517|gb|ABC99475.1| anaerobic ribonucleotide reductase activating protein
           [Synechococcus sp. JA-3-3Ab]
          Length = 210

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 22/97 (22%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE-EQWI 79
           GR AV     GC             +C  C              + ++QL  + +  + I
Sbjct: 34  GRRAV-VWVQGC-----------LRECPGC-------FNPTSWPFEINQLVKITDLAEQI 74

Query: 80  TGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
                      +GGEP  Q      L + L  +G  +
Sbjct: 75  LSNPRNEGVTFSGGEPFWQAPALASLARLLKAKGLTV 111


>gi|313895315|ref|ZP_07828872.1| radical SAM domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312976210|gb|EFR41668.1| radical SAM domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 358

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 50/155 (32%), Gaps = 31/155 (20%)

Query: 59  GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVE 117
             K      + +    +E    G  +     ++GGEPL   D+  +++A+    F I++ 
Sbjct: 67  SPKKRWLTPEIIKRFCDEADALGLAQ---MSVSGGEPLTFPDLEDVVKAIGPDRFHISMS 123

Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL-----------VFPQVNVSPENYIGF 166
           TNG +   +   W+          K  G  +LK+              +   S       
Sbjct: 124 TNGALLTLEKAKWV----------KSIGIDKLKISLDCIDENGPSFHDKGQTSAALRALD 173

Query: 167 DFERFSLQPMDGPF------LEENTNLAISYCFQN 195
           +     LQP+            E T     YC + 
Sbjct: 174 NALAADLQPVAQTVVTRQNCQTEQTERMAEYCQER 208


>gi|289423115|ref|ZP_06424930.1| arylsulfatase regulator [Peptostreptococcus anaerobius 653-L]
 gi|289156446|gb|EFD05096.1| arylsulfatase regulator [Peptostreptococcus anaerobius 653-L]
          Length = 457

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 31/114 (27%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA----DLIEEQWITGEKEGRY 87
           CNL           +C++C       QG  GG+  +  L      +      +G ++   
Sbjct: 104 CNL-----------KCKYC----FAKQGDFGGKAELMPLEVGKKAIDYLIANSGSRKNLE 148

Query: 88  CVLTGGEPLLQVDVPLIQALNKRGFEIA----------VETNGTIEPPQGIDWI 131
               GGEPL+  +  +++AL   G E+           + TNG +   + ID+I
Sbjct: 149 IDFFGGEPLM--NWEVVKALVAYGREVEKPAGKNIRYTITTNGVLLDDEKIDFI 200


>gi|259907251|ref|YP_002647607.1| pyrroloquinoline quinone biosynthesis protein PqqE [Erwinia
           pyrifoliae Ep1/96]
 gi|224962873|emb|CAX54354.1| Coenzyme PQQ synthesis protein E (Pyrroloquinoline quinone
           biosynthesis protein E) [Erwinia pyrifoliae Ep1/96]
          Length = 341

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 65  YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
               Q  D+ ++    G  +      +GGEPL++ D+P LI++    GF   + T+G
Sbjct: 1   MTTAQWIDVFKQARAMGAVQ---IGFSGGEPLVRKDLPELIRSARDLGFYTNLITSG 54


>gi|170760779|ref|YP_001786591.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum A3
           str. Loch Maree]
 gi|169407768|gb|ACA56179.1| pyruvate formate-lyase-activating enzyme (PFL-activatingenzyme)
           (Formate-C-acetyltransferase-activating enzyme)
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 299

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 38  REQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
              D+    C  C T+         G Y  + ++ +   +     E+      ++GGE +
Sbjct: 79  TINDKKCIGCLKCVTNCSNKALKNEGEYKEIKEIVEKCIQDKDFFEESNGGVTISGGEGM 138

Query: 97  LQV--DVPLIQALNKRGFEIAVETNGTIE 123
            Q      L+ +  K    +A+ET G I+
Sbjct: 139 NQPTFLKELVISFKKENIHVAIETTGYID 167


>gi|114607308|ref|XP_001173932.1| PREDICTED: molybdenum cofactor synthesis-step 1 protein isoform 1
           [Pan troglodytes]
          Length = 638

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +       K      +++  L       G  + R   LT
Sbjct: 80  CNL-----------RCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGVDKIR---LT 125

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GGEPL++ D V ++  L +  G   I V TNG
Sbjct: 126 GGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNG 157


>gi|152984897|ref|YP_001345880.1| coproporphyrinogen III oxidase [Pseudomonas aeruginosa PA7]
 gi|150960055|gb|ABR82080.1| probable oxidase [Pseudomonas aeruginosa PA7]
          Length = 384

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 35/108 (32%), Gaps = 10/108 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +             VD  LADL ++      +        
Sbjct: 11  PLALYVHIPWCVRKCPYCDFNSHAAGPELPEEAYVDALLADLEQDLRHVHGRRLGSIFFG 70

Query: 92  GGEPLLQVDVPLIQALN--------KRGFEIAVETN-GTIEPPQGIDW 130
           GG P L     L + L           G EI +E N GT E  +  D+
Sbjct: 71  GGTPSLFSAKALGRLLEGVERRVGFADGIEITLEANPGTFEQAKFADY 118


>gi|262374093|ref|ZP_06067370.1| conserved hypothetical protein [Acinetobacter junii SH205]
 gi|262311104|gb|EEY92191.1| conserved hypothetical protein [Acinetobacter junii SH205]
          Length = 384

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 18/117 (15%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQ------LADLIEEQWITGEKEG 85
            L           +C +CD +      G      +++Q      +AD   +  +   +  
Sbjct: 10  PLSLYIHMPWCVRKCPYCDFNSHAVPDGQLS--MDLEQQYLTALVADFETQVEMAQGRLI 67

Query: 86  RYCVLTGGEPLL---QVDVPLIQALNKR-----GFEIAVETN-GTIEPPQGIDWICV 133
               + GG P L   Q    L   L  R       EI +E N GT+E     D++ V
Sbjct: 68  HSVFIGGGTPSLISAQGYQWLFDQLKARLSFSDDCEITLEANPGTVEHDSFADYLSV 124


>gi|291288343|ref|YP_003505159.1| molybdenum cofactor biosynthesis protein A [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885503|gb|ADD69203.1| molybdenum cofactor biosynthesis protein A [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 332

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           DR + +C++C   TDF  +Q       + ++L   ++     G K+ R   +TGGEPL++
Sbjct: 25  DRCNFRCKYCMPTTDFKCLQHEN--ILSYEELLFAVDVFCSLGVKKVR---VTGGEPLVR 79

Query: 99  VDV-PLIQALNKRGF--EIAVETNGTI 122
             +   ++ L K     E+ + TNG +
Sbjct: 80  KGIGSFLEGLGKMEKLEEVTLTTNGAL 106


>gi|90423576|ref|YP_531946.1| molybdenum cofactor biosynthesis protein A [Rhodopseudomonas
           palustris BisB18]
 gi|90105590|gb|ABD87627.1| GTP cyclohydrolase subunit MoaA [Rhodopseudomonas palustris BisB18]
          Length = 344

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+     +     +++L  L       G K+ R   LTGGEPL+
Sbjct: 33  DRCDLRCVYCMSEDMTFL----PRADLLTLEELDRLCSAFIAKGVKKLR---LTGGEPLV 85

Query: 98  QVD-VPLIQALNKRGF-----EIAVETNGT 121
           + + + L+++L++        E+ + TNG+
Sbjct: 86  RRNMMSLVRSLSRHLHTGALDELTLTTNGS 115


>gi|325263088|ref|ZP_08129823.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp.
           D5]
 gi|324031481|gb|EGB92761.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp.
           D5]
          Length = 321

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK---RGFEIAVET 118
           G  Y +++L D+++        +G     +GG+P++Q +  L+ AL +        A+ET
Sbjct: 112 GTYYTLEELMDVLKRDKDFWGADGG-VTFSGGDPIIQWEF-LLDALKECKKNNIHTAIET 169

Query: 119 N 119
           +
Sbjct: 170 S 170


>gi|255524292|ref|ZP_05391250.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|255511975|gb|EET88257.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
          Length = 328

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105
           C  C   +             +Q   LI+E    G    +  + +GGEPL++ D+  LIQ
Sbjct: 16  CSHC---YRDSGKKYKEELTTEQGKKLIDEIAKAG---FKMMIFSGGEPLMRKDIFELIQ 69

Query: 106 ALNKRGFEIAVETNGTI 122
             +  G    + +NGT+
Sbjct: 70  YASDLGVIPVLGSNGTL 86


>gi|218441564|ref|YP_002379893.1| radical SAM protein [Cyanothece sp. PCC 7424]
 gi|218174292|gb|ACK73025.1| Radical SAM domain protein [Cyanothece sp. PCC 7424]
          Length = 381

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 45  AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
           A C FC  +F         ++    L   I+   I   +  RY V TGGEP L  ++ L 
Sbjct: 52  ANCNFC--NFAR-DRFPKEQWQFVDLQAGIDSINILFREGVRYLVFTGGEPTL--NLYLT 106

Query: 105 QAL-NKRGFEI 114
             + +  G  I
Sbjct: 107 DFVRHASGLGI 117


>gi|114327256|ref|YP_744413.1| molybdenum cofactor biosynthesis protein A [Granulibacter
           bethesdensis CGDNIH1]
 gi|114315430|gb|ABI61490.1| molybdenum cofactor biosynthesis protein A [Granulibacter
           bethesdensis CGDNIH1]
          Length = 356

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 13/90 (14%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL---- 96
           DR   +C +C    +    T   + +V  L +L     +  E   R   LTGGEPL    
Sbjct: 42  DRCDLRCTYC----MAEDMTFLPKRDVLTLEELDRLCRVFIELGVRKLRLTGGEPLVRRD 97

Query: 97  -LQVDVPLIQALNKRGF----EIAVETNGT 121
            +Q+   L Q L  RG     E+ + TNGT
Sbjct: 98  VMQLISRLGQHLEHRGGQGLEELTLTTNGT 127


>gi|302326098|gb|ADL25299.1| radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 332

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ---WITGEKEGRYCVLTGGEPLLQVDVP- 102
           C FC +D+           NV ++ + I      +   +       + GGEP+L      
Sbjct: 50  CSFCYSDWNSRDEAWNTPENVRKVIENIARFHADYFGADAAPWRLSVVGGEPILFPKKAQ 109

Query: 103 -LIQALNKRGFEIAVETNGTI 122
            +++     G E+++ TNG+ 
Sbjct: 110 FMVKTAVACGAEVSIITNGSH 130


>gi|261415943|ref|YP_003249626.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372399|gb|ACX75144.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 323

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ---WITGEKEGRYCVLTGGEPLLQVDVP- 102
           C FC +D+           NV ++ + I      +   +       + GGEP+L      
Sbjct: 41  CSFCYSDWNSRDEAWNTPENVRKVIENIARFHADYFGADAAPWRLSVVGGEPILFPKKAQ 100

Query: 103 -LIQALNKRGFEIAVETNGTI 122
            +++     G E+++ TNG+ 
Sbjct: 101 FMVKTAVACGAEVSIITNGSH 121


>gi|300777486|ref|ZP_07087344.1| molybdenum cofactor biosynthesis protein A [Chryseobacterium gleum
           ATCC 35910]
 gi|300502996|gb|EFK34136.1| molybdenum cofactor biosynthesis protein A [Chryseobacterium gleum
           ATCC 35910]
          Length = 299

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
              N  ++ ++   +    +       +TGGEPL++ D   +I+ L+  G  I + TNG 
Sbjct: 13  ELMNSQEIFEI--SKIFVQQFNINKIRITGGEPLVRNDFETIIKQLSTLGANIGITTNGV 70

Query: 122 I 122
           +
Sbjct: 71  L 71


>gi|169627970|ref|YP_001701619.1| molybdenum cofactor biosynthesis protein A [Mycobacterium abscessus
           ATCC 19977]
 gi|169239937|emb|CAM60965.1| Putative molybdenum cofactor biosynthesis protein A2 [Mycobacterium
           abscessus]
          Length = 330

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 24/110 (21%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY----CVLTGGEPL 96
           DR + +C +C      +          + L    E   + G    R        TGGEPL
Sbjct: 21  DRCNLRCTYC------MPAEGLDWLRSETLLTTDEYIRLIGIAVTRLGIDSVRFTGGEPL 74

Query: 97  LQVDVP-LIQALNKRGFE----IAVETNG------TIEP-PQGIDWICVS 134
           +  D+  L+ A+   G      IAV TNG       +     G+D I VS
Sbjct: 75  IFKDLEKLVAAV--AGMSPRPDIAVTTNGVGLDRKAVALREAGLDRINVS 122


>gi|324999155|ref|ZP_08120267.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudonocardia
           sp. P1]
          Length = 370

 Score = 36.2 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R    C +C      ++  +      D    +I +    G  +     L+GGEPL++ D+
Sbjct: 17  RCPLHCVYCSNPLALLE--RHDELATDDWLRVIGQAAGLGVVQVH---LSGGEPLVRGDL 71

Query: 102 P-LIQALNKRGFEIAVETNG 120
             L+    + G    + T+G
Sbjct: 72  ETLVAECRRLGLYTNLITSG 91


>gi|289523401|ref|ZP_06440255.1| radical SAM domain protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503093|gb|EFD24257.1| radical SAM domain protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 483

 Score = 36.2 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 8/97 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N        R + +C+ C   + G   T        ++ DLI +    G        ++G
Sbjct: 114 NFMVISPTMRCNLKCKGC---YAGSYDT-STDLTAGEIDDLITQAKELGMYFF---TISG 166

Query: 93  GEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGID 129
           GEP  + D+  I A +   +   V TNGT+   +  D
Sbjct: 167 GEPFTRKDLFDIWAKHDDCYF-QVYTNGTLITDEVAD 202


>gi|172037413|ref|YP_001803914.1| hypothetical protein cce_2500 [Cyanothece sp. ATCC 51142]
 gi|171698867|gb|ACB51848.1| hypothetical protein cce_2500 [Cyanothece sp. ATCC 51142]
          Length = 338

 Score = 36.2 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
                 + GGEPLL   +  +++ L +R   + + TN  I   + +     SP     + 
Sbjct: 72  GAPVVSIPGGEPLLHPQIDEIVKGLVERKKFVYLCTN-AILLEKSLHKFEPSPYFCFSVH 130

Query: 143 IKGGQE 148
           + G +E
Sbjct: 131 LDGLRE 136


>gi|222053773|ref|YP_002536135.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221563062|gb|ACM19034.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 355

 Score = 36.2 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 15/114 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDV-PL 103
           +C FC  DF+   G    R    +    I+E    G K   +    G GEPLL  D   +
Sbjct: 43  RCIFCAYDFI---GYPNRRLETGRTLTFIDELAEAGLKSLLFA---GEGEPLLHPDCGAM 96

Query: 104 IQALNKRGFEIAVETNGTI-------EPPQGIDWICVSPKAGCDLKIKGGQELK 150
           I+     G ++ + TNG +       E    + ++  S   G         ++K
Sbjct: 97  IRRARSNGIDVGLFTNGQLLTPQLAEEILPHLTFVRFSFNGGTPETYARIHQVK 150


>gi|46395075|gb|AAS91672.1| conserved hypothetical protein [Clostridium beijerinckii]
          Length = 389

 Score = 36.2 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C+ C   +      +      +D+    I++     +      + 
Sbjct: 47  CNL-----------KCKHC---YASSDNKRYDDELTLDESKKFIDDLK---DFNVPALLF 89

Query: 91  TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           +GGEPL++ + + L+   ++R     + TNGT+
Sbjct: 90  SGGEPLMKENILELLDYASQRKIRSTISTNGTL 122


>gi|150016879|ref|YP_001309133.1| radical SAM domain-containing protein [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903344|gb|ABR34177.1| Radical SAM domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 389

 Score = 36.2 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 19/93 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C+ C   +      +      +D+    I++     +      + 
Sbjct: 47  CNL-----------KCKHC---YASSDNKRYDDELTLDESKKFIDDLK---DFNVPALLF 89

Query: 91  TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           +GGEPL++ + + L+   ++R     + TNGT+
Sbjct: 90  SGGEPLMKENILELLDYASQRKIRSTISTNGTL 122


>gi|302348385|ref|YP_003816023.1| hypothetical protein ASAC_0585 [Acidilobus saccharovorans 345-15]
 gi|302328797|gb|ADL18992.1| hypothetical protein ASAC_0585 [Acidilobus saccharovorans 345-15]
          Length = 339

 Score = 36.2 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 44/118 (37%), Gaps = 23/118 (19%)

Query: 19  HAGRVAV-FCRFSGCNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIE 75
           +AG  AV F     C+             C +C  D D  G +           + D+I 
Sbjct: 23  YAGLKAVIFI-TGVCD-----------ENCFYCPVDRDRFGRRVMYVNDERAYDINDIIR 70

Query: 76  EQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNK---RGFEIAVETNGTIEPPQGI 128
           E    G        +TGG+PL  L + + LI+AL       F I + T G    P+ +
Sbjct: 71  EVERQGATGA---SITGGDPLADLPLTLSLIRALKATFGPEFHIHLYTPGRHSTPEAL 125


>gi|289803429|ref|ZP_06534058.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 182

 Score = 36.2 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 9   CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 68

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 69  MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 119


>gi|213580692|ref|ZP_03362518.1| hypothetical protein SentesTyph_05537 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 386

 Score = 36.2 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 181

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232


>gi|213028233|ref|ZP_03342680.1| hypothetical protein Salmonelentericaenterica_40390 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 356

 Score = 36.2 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 90  CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 149

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 150 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 200


>gi|197249479|ref|YP_002147478.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|254807201|sp|B5F1A0|RLMN_SALA4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|197213182|gb|ACH50579.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 388

 Score = 36.2 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 181

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232


>gi|168177427|ref|ZP_02612091.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum NCTC 2916]
 gi|182670990|gb|EDT82964.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum NCTC 2916]
 gi|322804366|emb|CBZ01916.1| ribonucleotide reductase of class III (anaerobic), activating
           protein [Clostridium botulinum H04402 065]
          Length = 171

 Score = 36.2 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 20/95 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           R  VF   SGC       Q++      FC           G + ++  +   IE      
Sbjct: 23  RSVVFV--SGCKHNCKECQNKEMQ--SFC----------YGDKISLKDILKRIESNVPL- 67

Query: 82  EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
               R    +GGEPL        L + +   G  I
Sbjct: 68  ---IRGVTFSGGEPLEHIKELSSLAEEIKSLGLNI 99


>gi|161502321|ref|YP_001569433.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|205829874|sp|A9MHL3|RLMN_SALAR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|160863668|gb|ABX20291.1| hypothetical protein SARI_00353 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 388

 Score = 36.2 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 181

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232


>gi|16761440|ref|NP_457057.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29140863|ref|NP_804205.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|56412596|ref|YP_149671.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|62181092|ref|YP_217509.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161612716|ref|YP_001586681.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167549454|ref|ZP_02343213.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|168232093|ref|ZP_02657151.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168238262|ref|ZP_02663320.1| radical SAM enzyme, Cfr family protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168243305|ref|ZP_02668237.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168261436|ref|ZP_02683409.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168466724|ref|ZP_02700578.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168821500|ref|ZP_02833500.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194444721|ref|YP_002041783.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194448097|ref|YP_002046583.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194469426|ref|ZP_03075410.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194738017|ref|YP_002115587.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197361531|ref|YP_002141167.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|198245006|ref|YP_002216589.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200388216|ref|ZP_03214828.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204929473|ref|ZP_03220547.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205353624|ref|YP_002227425.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207857933|ref|YP_002244584.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|213161946|ref|ZP_03347656.1| hypothetical protein Salmoneentericaenterica_18887 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213425329|ref|ZP_03358079.1| hypothetical protein SentesTyphi_06363 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213649661|ref|ZP_03379714.1| hypothetical protein SentesTy_21620 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213857325|ref|ZP_03384296.1| hypothetical protein SentesT_19305 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224582938|ref|YP_002636736.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|289825424|ref|ZP_06544661.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|75481689|sp|Q57LI4|RLMN_SALCH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81362045|sp|Q5PNI4|RLMN_SALPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81628152|sp|Q8Z4P2|RLMN_SALTI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829875|sp|A9N1Z8|RLMN_SALPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807202|sp|B5FR66|RLMN_SALDC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807203|sp|B5R584|RLMN_SALEP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807204|sp|B5RCZ4|RLMN_SALG2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807205|sp|B4TD95|RLMN_SALHS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807206|sp|B4T0Q1|RLMN_SALNS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807207|sp|C0PYM8|RLMN_SALPC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807208|sp|B5BAY3|RLMN_SALPK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807209|sp|B4TR97|RLMN_SALSV RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|25320182|pir||AD0822 conserved hypothetical protein STY2770 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503740|emb|CAD02728.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136488|gb|AAO68054.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56126853|gb|AAV76359.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62128725|gb|AAX66428.1| putative Fe-S-cluster redox enzyme [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161362080|gb|ABX65848.1| hypothetical protein SPAB_00414 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403384|gb|ACF63606.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194406401|gb|ACF66620.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194455790|gb|EDX44629.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194713519|gb|ACF92740.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195630780|gb|EDX49372.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197093007|emb|CAR58440.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197288805|gb|EDY28178.1| radical SAM enzyme, Cfr family protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197939522|gb|ACH76855.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199605314|gb|EDZ03859.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204321192|gb|EDZ06392.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205273405|emb|CAR38380.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205325472|gb|EDZ13311.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205333531|gb|EDZ20295.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205337567|gb|EDZ24331.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205342014|gb|EDZ28778.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205349318|gb|EDZ35949.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206709736|emb|CAR34088.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467465|gb|ACN45295.1| hypothetical protein SPC_1129 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|320087020|emb|CBY96789.1| Ribosomal RNA large subunit methyltransferase N 23S rRNA m2A2503
           methyltransferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|322613730|gb|EFY10669.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322619527|gb|EFY16403.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322625032|gb|EFY21861.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322629525|gb|EFY26301.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322634044|gb|EFY30781.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322635518|gb|EFY32229.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322639806|gb|EFY36485.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322644428|gb|EFY40969.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648573|gb|EFY45022.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322655207|gb|EFY51516.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658254|gb|EFY54520.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322664255|gb|EFY60452.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322669422|gb|EFY65571.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322673149|gb|EFY69255.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322676541|gb|EFY72609.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322683291|gb|EFY79305.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322685823|gb|EFY81816.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|322715579|gb|EFZ07150.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
 gi|323194766|gb|EFZ79954.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323199546|gb|EFZ84637.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323204679|gb|EFZ89677.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323208127|gb|EFZ93072.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323210149|gb|EFZ95050.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323217017|gb|EGA01739.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323221815|gb|EGA06219.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323225006|gb|EGA09261.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323229295|gb|EGA13419.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323235390|gb|EGA19474.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323237424|gb|EGA21487.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323245178|gb|EGA29179.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323248881|gb|EGA32807.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323253168|gb|EGA37000.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323255402|gb|EGA39170.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323262039|gb|EGA45604.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323266350|gb|EGA49838.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323269819|gb|EGA53269.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|326624345|gb|EGE30690.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326628724|gb|EGE35067.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 388

 Score = 36.2 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 181

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232


>gi|326391532|ref|ZP_08213064.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325992413|gb|EGD50873.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 354

 Score = 36.2 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 17/103 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C  +      +     + +    + +E    G       +++
Sbjct: 54  CNL-----------KCVHCYNNSSSNPKSYNEELSEELWLKIAKELKAMGVF---TVIIS 99

Query: 92  GGEPLLQVDVP---LIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           GGEPLL+  +    L      +   I + TNG       ID++
Sbjct: 100 GGEPLLKRSLVEKILTVFAENKNIAIGIITNGWFVDDSFIDFL 142


>gi|300113205|ref|YP_003759780.1| coenzyme PQQ biosynthesis protein E [Nitrosococcus watsonii C-113]
 gi|299539142|gb|ADJ27459.1| coenzyme PQQ biosynthesis protein E [Nitrosococcus watsonii C-113]
          Length = 387

 Score = 36.2 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 9/95 (9%)

Query: 28  RFSGCNLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           R     LW           QC +C       +       + +    +  E    G  +  
Sbjct: 18  RTQ--PLWLLAGLTYACPLQCPYCSNPLDFAKHKY--ELSTEDWLRVFHEARAMGAAQLG 73

Query: 87  YCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           +   +GGEPL + D+  LI    K G+   + T+G
Sbjct: 74  F---SGGEPLARRDLEVLITEARKLGYYTNLITSG 105


>gi|296331307|ref|ZP_06873779.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305676293|ref|YP_003867965.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296151422|gb|EFG92299.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305414537|gb|ADM39656.1| molybdenum cofactor biosynthesis protein A [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 341

 Score = 36.2 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 10/55 (18%)

Query: 90  LTGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEP-------PQGIDWICVS 134
           LTGGEPL++ D+P LI+ L +  G   IA+ TNG++ P         G+  + +S
Sbjct: 76  LTGGEPLMRKDMPELIKKLARIPGVRDIAMTTNGSLLPVYAERLKEAGLKRVTIS 130


>gi|295103385|emb|CBL00929.1| GTP cyclohydrolase subunit MoaA [Faecalibacterium prausnitzii
           SL3/3]
          Length = 325

 Score = 36.2 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 25/113 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR+C    +     K  R  V    + +    +  +       +T
Sbjct: 20  CNL-----------RCRYC----MPDGVEKLEREAVLTYEEFLRLAALFAQCGIDTVRVT 64

Query: 92  GGEPLLQVDVP-LIQALNK-RGF-EIAVETNGTIEPPQ-------GIDWICVS 134
           GGEPL++ +V  L+  L    G   + + TN  +   Q       G+D + +S
Sbjct: 65  GGEPLVRKNVAQLVAGLKATPGIRRVTLTTNAVLLAEQLPALLDAGLDSVNIS 117


>gi|254167788|ref|ZP_04874638.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|197623316|gb|EDY35881.1| radical SAM domain protein [Aciduliprofundum boonei T469]
          Length = 388

 Score = 36.2 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 38/188 (20%)

Query: 29  FSG-CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
            +G CNL            CR+C        G+        ++   IE+     EK+   
Sbjct: 39  LTGVCNL-----------NCRYC-------GGSIPEEVMPHEIQYSIEDLKNFVEKDKDA 80

Query: 88  CV-LTGGEPLL--QVDVPLIQALNKRGFEIAVETNG--TIEPPQG----IDWICVS---- 134
            +   GGEPLL  +    ++  +  + F +   TNG    + P+     ID I VS    
Sbjct: 81  IIAFYGGEPLLRIEKMKEIMDNIRAKRFVVQ--TNGIFLHKIPEEYLNRIDAILVSIDGV 138

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
           P+     +  G  E+  V  +V    E Y G    R ++      + +    L++ +   
Sbjct: 139 PEVTNYYRGNGVYEI--VVDRVRKIREKYKGDLIARMAVSEESDIYRDVTHLLSLPF--D 194

Query: 195 NPKWRLSV 202
           +  W+L+V
Sbjct: 195 HVHWQLNV 202


>gi|53802993|ref|YP_115280.1| hypothetical protein MCA2887 [Methylococcus capsulatus str. Bath]
 gi|81680833|sp|Q603C0|RLMN_METCA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|53756754|gb|AAU91045.1| conserved hypothetical protein TIGR00048 [Methylococcus capsulatus
           str. Bath]
          Length = 366

 Score = 36.2 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL-IEEQWITGEKEGRYCVLT 91
           N      Q   S +C FC T     QG        + +  L + +  +  E+     VL 
Sbjct: 112 NTLCVSSQVGCSLECSFCSTAR---QGFNRNLTTAEIIGQLWVAQHRLDEEQRISNVVLM 168

Query: 92  G-GEPLL 97
           G GEPLL
Sbjct: 169 GMGEPLL 175


>gi|20093717|ref|NP_613564.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
 gi|19886608|gb|AAM01494.1| Predicted Fe-S oxidoreductase [Methanopyrus kandleri AV19]
          Length = 243

 Score = 36.2 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 23/98 (23%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL            C +C  ++         R+   +  D++E     G    R   +
Sbjct: 50  GCNL-----------DCAYCYVNYPRRHPW-DRRWKFHRPIDVVERLKNMGGDVVR---V 94

Query: 91  TGGEPLLQVD--VPLIQA----LNKRGFEIAVETNGTI 122
           +G EP L  +  + LI+     L  R F   +ETNGTI
Sbjct: 95  SGCEPTLCKEHILELIELCGRELPDRKFV--LETNGTI 130


>gi|16765845|ref|NP_461460.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|167991834|ref|ZP_02572933.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|197263041|ref|ZP_03163115.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|81594911|sp|Q8ZN52|RLMN_SALTY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|16421069|gb|AAL21419.1| putative Fe-S-cluster redox enzyme [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|197241296|gb|EDY23916.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205329931|gb|EDZ16695.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261247721|emb|CBG25549.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994643|gb|ACY89528.1| hypothetical protein STM14_3097 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159074|emb|CBW18588.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913512|dbj|BAJ37486.1| 23S rRNA methyltransferase N [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321222774|gb|EFX47845.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323130853|gb|ADX18283.1| radical SAM superfamily protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 388

 Score = 36.2 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 181

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232


>gi|329119798|ref|ZP_08248472.1| molybdenum cofactor biosynthesis protein A [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327463954|gb|EGF10265.1| molybdenum cofactor biosynthesis protein A [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 364

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 64/173 (36%), Gaps = 28/173 (16%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D  + +C +C          K     + ++  L+     +G ++ R   +TGGEP L+ D
Sbjct: 60  DLCNYRCTYC-LPDGYQGKAKPDELTLPEIQTLVTAFAASGTRKIR---VTGGEPTLRRD 115

Query: 101 VP-LIQALNKRGFEIAVE-----TN----GTIEP---PQGIDWICVS-PKAGCDL--KIK 144
           +  +I A         +E     TN    G I P     G+D + VS      D   KI 
Sbjct: 116 LADIIAACKAAP---QIENVALTTNAYRLGKIFPACRAAGLDKLNVSIDSFNPDTFQKIT 172

Query: 145 GGQELKLVFPQVN-VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196
           G  E + +   +  +    + G       L+   G  L +    A++Y    P
Sbjct: 173 GKNECQNILRDLETILDSGFYGIKINTLLLRQYAGQTLPD----ALAYIKTRP 221


>gi|261820570|ref|YP_003258676.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium
           wasabiae WPP163]
 gi|261604583|gb|ACX87069.1| radical SAM enzyme, Cfr family [Pectobacterium wasabiae WPP163]
          Length = 400

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I    +TG++     V+ G
Sbjct: 134 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRPITNVVMMG 193

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 194 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 244


>gi|253689386|ref|YP_003018576.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755964|gb|ACT14040.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 419

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I    +TG++     V+ G
Sbjct: 153 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRPITNVVMMG 212

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 213 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 263


>gi|256830160|ref|YP_003158888.1| Radical SAM domain protein [Desulfomicrobium baculatum DSM 4028]
 gi|256579336|gb|ACU90472.1| Radical SAM domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 399

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 13/108 (12%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           G  A       C L +       +  C+ C            G  +  +   LI+     
Sbjct: 48  GTPA-------CKLIAWEVTRSCNLACKHC--RAEAHLEPYEGELDTAEAKALIDTFPQV 98

Query: 81  GEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG 127
           G       + TGG+P+++ DV  LI+    +G    +  NGT+  P  
Sbjct: 99  G---NPIIIFTGGDPMMRADVYELIRYATDKGLRCVMSPNGTLITPDT 143


>gi|227328680|ref|ZP_03832704.1| hypothetical protein PcarcW_15616 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 418

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I    +TG++     V+ G
Sbjct: 152 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRPITNVVMMG 211

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 212 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 262


>gi|227112689|ref|ZP_03826345.1| hypothetical protein PcarbP_06994 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 418

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I    +TG++     V+ G
Sbjct: 152 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRPITNVVMMG 211

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 212 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 262


>gi|213621172|ref|ZP_03373955.1| hypothetical protein SentesTyp_28162 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 315

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 72  CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 131

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 132 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 182


>gi|126700364|ref|YP_001089261.1| putative radical SAM family protein [Clostridium difficile 630]
 gi|115251801|emb|CAJ69636.1| putative radical SAM-family protein [Clostridium difficile]
          Length = 459

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 29/113 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWI-TGEKEGRYC 88
           CNL           +C++C   F       G +   + +     I+     +G ++    
Sbjct: 104 CNL-----------KCKYC---FAAQGDFGGEKELMSFEVGKAAIDYLIANSGSRKNLEI 149

Query: 89  VLTGGEPLLQVDVPLIQALNKRGFEIA----------VETNGTIEPPQGIDWI 131
              GGEPL+  +  +++ L   G  +           + TNG +   + ID+I
Sbjct: 150 DFFGGEPLM--NFEVVKQLVDYGRSVEKDYNKNIRFTITTNGVLLNDEIIDYI 200


>gi|254976344|ref|ZP_05272816.1| putative radical SAM family protein [Clostridium difficile
           QCD-66c26]
 gi|255093729|ref|ZP_05323207.1| putative radical SAM family protein [Clostridium difficile CIP
           107932]
 gi|255101920|ref|ZP_05330897.1| putative radical SAM family protein [Clostridium difficile
           QCD-63q42]
 gi|255307789|ref|ZP_05351960.1| putative radical SAM family protein [Clostridium difficile ATCC
           43255]
 gi|255315481|ref|ZP_05357064.1| putative radical SAM family protein [Clostridium difficile
           QCD-76w55]
 gi|255518144|ref|ZP_05385820.1| putative radical SAM family protein [Clostridium difficile
           QCD-97b34]
 gi|255651260|ref|ZP_05398162.1| putative radical SAM family protein [Clostridium difficile
           QCD-37x79]
 gi|260684324|ref|YP_003215609.1| putative radical SAM family protein [Clostridium difficile CD196]
 gi|260687983|ref|YP_003219117.1| putative radical SAM family protein [Clostridium difficile R20291]
 gi|306521102|ref|ZP_07407449.1| putative radical SAM family protein [Clostridium difficile
           QCD-32g58]
 gi|260210487|emb|CBA64969.1| putative radical SAM family protein [Clostridium difficile CD196]
 gi|260214000|emb|CBE06119.1| putative radical SAM family protein [Clostridium difficile R20291]
          Length = 459

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 29/113 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWI-TGEKEGRYC 88
           CNL           +C++C   F       G +   + +     I+     +G ++    
Sbjct: 104 CNL-----------KCKYC---FAAQGDFGGEKELMSFEVGKAAIDYLIANSGSRKNLEI 149

Query: 89  VLTGGEPLLQVDVPLIQALNKRGFEIA----------VETNGTIEPPQGIDWI 131
              GGEPL+  +  +++ L   G  +           + TNG +   + ID+I
Sbjct: 150 DFFGGEPLM--NFEVVKQLVDYGRSVEKDYNKNIRFTITTNGVLLNDEIIDYI 200


>gi|30913216|sp|Q9NZB8|MOCS1_HUMAN RecName: Full=Molybdenum cofactor biosynthesis protein 1; AltName:
           Full=Cell migration-inducing gene 11 protein; AltName:
           Full=Molybdenum cofactor synthesis-step 1 protein A-B;
           Includes: RecName: Full=Molybdenum cofactor biosynthesis
           protein A; Includes: RecName: Full=Molybdenum cofactor
           biosynthesis protein C
          Length = 636

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +       K      +++  L       G  + R   LT
Sbjct: 80  CNL-----------RCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGIDKIR---LT 125

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GGEPL++ D V ++  L +  G   I V TNG
Sbjct: 126 GGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNG 157


>gi|50122145|ref|YP_051312.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium
           atrosepticum SCRI1043]
 gi|81644326|sp|Q6D273|RLMN_ERWCT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|49612671|emb|CAG76121.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 398

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I    +TG++     V+ G
Sbjct: 132 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRPITNVVMMG 191

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 192 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 242


>gi|23014062|ref|ZP_00053900.1| COG1509: Lysine 2,3-aminomutase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 343

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
           CRFC        G         ++   +   ++    + R  +LTGG+PL+     L   
Sbjct: 108 CRFC--FRRARVGDGEATMTEAEIEAALA--YVACRPDIREVILTGGDPLMLPAPRLGAL 163

Query: 107 LNKRGFEIAVE 117
           L++ G    VE
Sbjct: 164 LDRIGAIGHVE 174


>gi|307634938|gb|ADN78354.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase,
           putative [Geobacter sulfurreducens KN400]
          Length = 322

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 11/86 (12%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
                 R +A+C  C+T F          +  +Q  ++  E         ++  +TGGEP
Sbjct: 4   CIIVTYRCNAKCHMCNTWF----------HPTEQDKEISPEVIAKLPSGLKFINITGGEP 53

Query: 96  LLQVDVP-LIQALNKRGFEIAVETNG 120
            L+ D+  +I+    +   + + TNG
Sbjct: 54  FLRKDLAQIIEVALNKTERLVISTNG 79


>gi|296185249|ref|ZP_06853659.1| radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|296050083|gb|EFG89507.1| radical SAM domain protein [Clostridium carboxidivorans P7]
          Length = 328

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105
           C  C   +             +Q   LI+E    G    +  + +GGEPL++ D+  LIQ
Sbjct: 16  CSHC---YRDSGKKYKEELTTEQGKKLIDEIAKAG---FKMMIFSGGEPLMRKDIFELIQ 69

Query: 106 ALNKRGFEIAVETNGTI 122
             +  G    + +NGT+
Sbjct: 70  YASDLGVIPVLGSNGTL 86


>gi|297560374|ref|YP_003679348.1| molybdenum cofactor biosynthesis protein A [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296844822|gb|ADH66842.1| molybdenum cofactor biosynthesis protein A [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 335

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 14/105 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C          K      D+L  LI                TGGEPLL+  
Sbjct: 19  DRCNLRCTYCMPPEGLEWLPKPELLTDDELLRLIR--IGVTRLGITEVRFTGGEPLLRRG 76

Query: 101 VP-LIQ---ALNKRGFEIAVETNG---TIEPP----QGIDWICVS 134
           +P L+    AL  R    A+ TNG       P     G+D + VS
Sbjct: 77  LPGLVAGTTALEPRPHT-ALTTNGIGLARMAPALAEAGLDRVNVS 120


>gi|262196198|ref|YP_003267407.1| radical SAM protein [Haliangium ochraceum DSM 14365]
 gi|262079545|gb|ACY15514.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365]
          Length = 431

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 29/116 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY--------NVDQLADLIEEQWITGEK 83
           CNL            C +C   +   +     +          V ++A  +       + 
Sbjct: 22  CNL-----------ACPYC--YYFFQENDLAEKSASALIPESTVREVAAFLRAGAEALDI 68

Query: 84  EGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIA-----VETNGTIEPPQGIDWI 131
              Y  L GGEPLL        L   L +   ++A     ++TNGT+   + ID  
Sbjct: 69  GHLYIGLHGGEPLLLPKKRFDALCTILREELGDVAQVHLGLQTNGTLVDDEWIDLF 124


>gi|226947318|ref|YP_002802409.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum A2 str. Kyoto]
 gi|226841206|gb|ACO83872.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum A2 str. Kyoto]
          Length = 171

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 20/95 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           R  VF   SGC       Q++      FC           G + ++  +   IE      
Sbjct: 23  RSVVFV--SGCKHNCKECQNKEMQ--SFC----------YGDKISLKDILKRIESNVPL- 67

Query: 82  EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
               R    +GGEPL        L + +   G  I
Sbjct: 68  ---IRGVTFSGGEPLEHIKELSSLAEEIKSLGLNI 99


>gi|110835223|ref|YP_694082.1| molybdenum cofactor biosynthesis protein A [Alcanivorax borkumensis
           SK2]
 gi|110648334|emb|CAL17810.1| molybdenum cofactor biosynthesis protein A [Alcanivorax borkumensis
           SK2]
          Length = 337

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 23/102 (22%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            R S          DR   +C +C    +    T   R  V  L ++     +      +
Sbjct: 23  VRLS--------VTDRCDFRCVYC----MAEDMTFVPRDQVLTLEEMSRLARVLVRLGVK 70

Query: 87  YCVLTGGEPLLQVDVPL-------IQALNKRGFEIAVETNGT 121
              LTGGEPL++ DV         I+ L +        TNG 
Sbjct: 71  RIRLTGGEPLVRRDVAHLVRDIGAIEGLRELNMT----TNGA 108


>gi|29832997|ref|NP_827631.1| molybdenum cofactor biosynthesis protein A [Streptomyces
           avermitilis MA-4680]
 gi|29610118|dbj|BAC74166.1| putative molybdenum cofactor biosynthesis protein A [Streptomyces
           avermitilis MA-4680]
          Length = 343

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 50/139 (35%), Gaps = 33/139 (23%)

Query: 15  GEGGHA-----GRVAVFCRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
           GEG        GRVA   R S    CNL           +C +C  +       K     
Sbjct: 10  GEGARVLIDTYGRVATDLRVSLTDRCNL-----------RCTYCMPEEGLQWLAKPDLLT 58

Query: 67  VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV----PLIQALNKRGFEIAVETNG-- 120
            D++  LI+               TGGEPLL+  +      + AL  R  + ++ TNG  
Sbjct: 59  DDEIVRLID--IAVTRLGITEVRFTGGEPLLRPGLVGIVERVAALASRP-QTSLTTNGIG 115

Query: 121 -----TIEPPQGIDWICVS 134
                T     G+D + VS
Sbjct: 116 LSRTATALKAAGLDRVNVS 134


>gi|15920304|ref|NP_375973.1| coenzyme PQQ synthesis protein [Sulfolobus tokodaii str. 7]
 gi|15621086|dbj|BAB65082.1| 347aa long hypothetical coenzyme PQQ synthesis protein [Sulfolobus
           tokodaii str. 7]
          Length = 347

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           +L            C+ C      I     G    ++   L+EE     +      V TG
Sbjct: 8   HLVFWEVTKACPLTCKHC--RANAIDKPLPGELTTEEGKKLLEE---ISQFGKVVVVFTG 62

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAV 116
           G+PL + D+  L+      G  +++
Sbjct: 63  GDPLSRDDIFELMDYAKSLGLIVSI 87


>gi|86144334|ref|ZP_01062666.1| pyruvate formate lyase activating enzyme [Vibrio sp. MED222]
 gi|85837233|gb|EAQ55345.1| pyruvate formate lyase activating enzyme [Vibrio sp. MED222]
          Length = 235

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 14/113 (12%)

Query: 30  SGCN-----LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           SGC      L  G +       C  CD            +     ++D++ E     +  
Sbjct: 2   SGCPSSALSLIEG-KVKWDPLACTNCDQCVDICDHKSSPKITTMTVSDVL-ELVRHNQFF 59

Query: 85  GRYCVLTGGEPLLQV--DVPLIQALNK----RGFEIAVETNGTIEPPQGIDWI 131
                ++GGE  +Q+   V L QA+            +++NG++   QG D +
Sbjct: 60  LSGITVSGGEATMQLPFIVELFQAIKSDPQLAHLTCFIDSNGSLTQ-QGWDKV 111


>gi|301166467|emb|CBW26043.1| molybdenum cofactor biosynthesis protein A [Bacteriovorax marinus
          SJ]
          Length = 328

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 10/60 (16%)

Query: 41 DRLSAQCRFCDTDFVGIQGTKGGR---YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
          D+ + +C +C    + +  T        +VD+ A ++E+    G +E R   +TGGEPLL
Sbjct: 36 DKCNLRCHYC----MPLDATFMDEQRYLSVDEYAQVVEDLCKFGLEEVR---ITGGEPLL 88


>gi|296242351|ref|YP_003649838.1| radical SAM domain-containing protein [Thermosphaera aggregans DSM
           11486]
 gi|296094935|gb|ADG90886.1| Radical SAM domain protein [Thermosphaera aggregans DSM 11486]
          Length = 306

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 16/136 (11%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R +  C FC         T   R  V    D     +++ +    Y  +TGGEPLL+ D 
Sbjct: 20  RCNYNCIFC----HREGLTGLDRAEVLTPDDYRYLAYVSRKLGIVYFKITGGEPLLRRDT 75

Query: 102 P-LIQALNKRGFEIAVETNG-------TIEPPQGIDWICVSPKAGCDLK----IKGGQEL 149
           P +I+ + +   E+++ TNG             G+D + VS  +  D       +    +
Sbjct: 76  PDIIKGVREYSKEVSLTTNGYFLKNLAGKLADAGLDRLNVSVHSLNDEVYQAITRTRGSV 135

Query: 150 KLVFPQVNVSPENYIG 165
           KL+   +  + E+ I 
Sbjct: 136 KLILEGIEQALEHGIK 151


>gi|24374870|ref|NP_718913.1| oxygen-independent coproporphyrinogen III oxidase, putative
           [Shewanella oneidensis MR-1]
 gi|24349568|gb|AAN56357.1|AE015773_2 oxygen-independent coproporphyrinogen III oxidase, putative
           [Shewanella oneidensis MR-1]
          Length = 385

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 10/101 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91
            L           +C +CD +  G  G    +  VD L   + +     +    + + + 
Sbjct: 13  PLSLYIHIPWCVQKCPYCDFNSHGQNGELPQQAYVDALLADLRQDLHLVQGRKLHTIFIG 72

Query: 92  GGEPLLQVDVPLIQALNKR--------GFEIAVETN-GTIE 123
           GG P L     + + L+          G EI +E N GT+E
Sbjct: 73  GGTPSLFDANQIKRILDDANALIPFSDGIEITMEANPGTLE 113


>gi|330836992|ref|YP_004411633.1| aspartate carbamoyltransferase [Spirochaeta coccoides DSM 17374]
 gi|329748895|gb|AEC02251.1| aspartate carbamoyltransferase [Spirochaeta coccoides DSM 17374]
          Length = 538

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 11/48 (22%)

Query: 16  EGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
           E  H G  A+F R +               +C +CDT     +  KG 
Sbjct: 493 ESLHEGVPAMFRRTA-----------DDKFECAWCDTVHGFKEIWKGA 529


>gi|323700676|ref|ZP_08112588.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfovibrio sp. ND132]
 gi|323460608|gb|EGB16473.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Desulfovibrio desulfuricans ND132]
          Length = 227

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 18/97 (18%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           +F    GCNL           +C  C                V   A  +          
Sbjct: 30  IF--LGGCNL-----------RCPTC---HNFQLAWDMHSLPVID-AQRVRAYLRDRAGW 72

Query: 85  GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
                ++GGEP     V  L   + K G  + +++NG
Sbjct: 73  LDGVTISGGEPTTVPGVGELAFEIRKTGLPVKMDSNG 109


>gi|308233580|ref|ZP_07664317.1| radical SAM domain protein [Atopobium vaginae DSM 15829]
          Length = 332

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 26/110 (23%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           A+F  F+GC L           +C FC  +F   Q   G +    +LA+++ E    G  
Sbjct: 66  AIF--FTGCPL-----------RCAFC-QNFKISQEGFGLKITTARLAEIMLELQAQGAL 111

Query: 84  EGRYCVLTGGEPLL---QVDVPLIQALNKRGFEIAV--ETNGTIEPPQGI 128
                      PL     V   L  A    G ++ +   T+G  E P+ I
Sbjct: 112 NINLVT-----PLHYAPHVREALFMA-KDAGLQLPIVCNTSG-YERPETI 154


>gi|291522320|emb|CBK80613.1| GTP cyclohydrolase subunit MoaA [Coprococcus catus GD/7]
          Length = 322

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 20/104 (19%)

Query: 27  CRFS---GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            R S    CNL            C                    +++  L     I    
Sbjct: 12  IRLSVTDRCNLRCRYCMPPDGISCL-----------PMREILTYEEIEHL---CRIFAAL 57

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNK-RGF-EIAVETNGTIEP 124
                 +TGGEP ++ ++  LI+ + +  G   + + TNGT+  
Sbjct: 58  GIHKVKITGGEPFVRKNICHLIRRIKQIPGIDSVTLTTNGTLAL 101


>gi|257387266|ref|YP_003177039.1| Wyosine base formation domain protein [Halomicrobium mukohataei DSM
           12286]
 gi|257169573|gb|ACV47332.1| Wyosine base formation domain protein [Halomicrobium mukohataei DSM
           12286]
          Length = 325

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 21/107 (19%)

Query: 38  REQDRLSAQCRFCDTDFVGIQGTKGG--RYNVDQLADL-----------------IEEQW 78
               + + +C FC  D  G     G     +   +AD                  +  + 
Sbjct: 56  TPVVKCNERCVFCWRDHAGHAYELGDVQWDDPSAVADASLELQKRLLSGFGGNEKVPRER 115

Query: 79  ITGEKEGRYCVLT-GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
                E R+  ++  GEP L   +P LI+  + R     + +NGT  
Sbjct: 116 FEEAMEPRHVAISLDGEPSLYPYLPELIEEFHDRDITTFLVSNGTNP 162


>gi|160902963|ref|YP_001568544.1| radical SAM domain-containing protein [Petrotoga mobilis SJ95]
 gi|160360607|gb|ABX32221.1| Radical SAM domain protein [Petrotoga mobilis SJ95]
          Length = 351

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 26/122 (21%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIE-----EQWITGEKEGRY 87
           L+S    +  + +C +C   ++G + G +      +++ D I      E+    E++   
Sbjct: 2   LFSIWLTNNCNLKCSYC---YIGEKNGEEMKDETKEKIVDFISLKSEIEKRKKSERKHIN 58

Query: 88  CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETNGTIEPPQGIDW-------IC 132
            V  GGEPLL     LI                   + TNGT+   + I++       + 
Sbjct: 59  IVYFGGEPLL--RFDLITFFTKEIKKKIKGIPIFFHMTTNGTLLTKEIINYFKENQLPVT 116

Query: 133 VS 134
           +S
Sbjct: 117 LS 118


>gi|114607312|ref|XP_527381.2| PREDICTED: molybdenum cofactor synthesis-step 1 protein isoform 5
           [Pan troglodytes]
          Length = 638

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +       K      +++  L       G  + R   LT
Sbjct: 80  CNL-----------RCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGVDKIR---LT 125

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GGEPL++ D V ++  L +  G   I V TNG
Sbjct: 126 GGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNG 157


>gi|300898269|ref|ZP_07116620.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           198-1]
 gi|300358058|gb|EFJ73928.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           198-1]
          Length = 352

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 45  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 100

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 101 RDFTDIIAAVRENDAIRQIAVTTNG 125


>gi|293607181|ref|ZP_06689523.1| molybdenum cofactor biosynthesis protein A [Achromobacter
           piechaudii ATCC 43553]
 gi|292814515|gb|EFF73654.1| molybdenum cofactor biosynthesis protein A [Achromobacter
           piechaudii ATCC 43553]
          Length = 371

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 25/114 (21%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D  +  +  +     + ++++ L       G ++ R   LTGGE
Sbjct: 47  DRCNFRCTYCMPREVFDASYTFMPHS--ALLSFEEISRLAGIFTQLGVEKIR---LTGGE 101

Query: 95  PLLQVDVP-LIQALNK------RGFEIAVETNGTI-------EPPQGIDWICVS 134
           PLL+  +  L+  L        +  ++ + TNG++           G+  + VS
Sbjct: 102 PLLRKHIENLVGQLAALRTPAGQALDLTLTTNGSVLARKAAALKAAGLSRVTVS 155


>gi|227822257|ref|YP_002826228.1| molybdenum cofactor biosynthesis protein A [Sinorhizobium fredii
           NGR234]
 gi|227341257|gb|ACP25475.1| molybdenum cofactor biosynthesis protein A [Sinorhizobium fredii
           NGR234]
          Length = 368

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 20/149 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          K     +++L  L       G ++ R   LTGGEPL++ +
Sbjct: 57  DRCDFRCTYC-MAEHMTFLPKKDLLTLEELQRLCSAFIAKGVRKLR---LTGGEPLVRKN 112

Query: 101 VP-LIQAL---NKRGF--EIAVETNGTI-------EPPQGIDWICVSPKAGCDLK---IK 144
           +  L++ L    + G   E+ + TNG+            G+  I VS       K   I 
Sbjct: 113 IMFLVRELGKEIEAGRLDELTLTTNGSQLSKFAAELADCGVRRINVSLDTLDPDKFREIT 172

Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSL 173
              EL  V   ++ +    +       +L
Sbjct: 173 RWGELTKVIEGIDAAQAAGLKVKINAVAL 201


>gi|218676233|ref|YP_002395052.1| Pyruvate formate-lyase activating enzyme [Vibrio splendidus LGP32]
 gi|218324501|emb|CAV25965.1| Pyruvate formate-lyase activating enzyme [Vibrio splendidus LGP32]
          Length = 295

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 14/113 (12%)

Query: 30  SGCN-----LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           SGC      L  G +       C  CD            +     ++D++ E     +  
Sbjct: 62  SGCPSSALSLIEG-KVKWDPLACTNCDQCVDICDHKSSPKITTMTVSDVL-ELVRHNQFF 119

Query: 85  GRYCVLTGGEPLLQV--DVPLIQALNK----RGFEIAVETNGTIEPPQGIDWI 131
                ++GGE  +Q+   V L QA+            +++NG++   QG D +
Sbjct: 120 LSGITVSGGEATMQLPFIVELFQAIKSDPQLAHLTCFIDSNGSLTQ-QGWDKV 171


>gi|114607314|ref|XP_001173942.1| PREDICTED: molybdenum cofactor synthesis-step 1 protein isoform 3
           [Pan troglodytes]
          Length = 620

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +       K      +++  L       G  + R   LT
Sbjct: 80  CNL-----------RCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGVDKIR---LT 125

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GGEPL++ D V ++  L +  G   I V TNG
Sbjct: 126 GGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNG 157


>gi|34419250|ref|NP_899263.1| anaerobic NTP reductase small subunit [Vibrio phage KVP40]
 gi|34332931|gb|AAQ64086.1| anaerobic NTP reductase small subunit [Vibrio phage KVP40]
          Length = 158

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 23/110 (20%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           MK   I E F    GEG    R+++F   SGC             +C  C  +       
Sbjct: 1   MKYQKINE-FDFANGEGV---RLSIFV--SGC-----------EHRCAGCY-NESTWDPN 42

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110
            G  +  + L D++               LTGG+PL   +   I  + K 
Sbjct: 43  DGIDFTEETLRDVLTSLEQHDG-----LSLTGGDPLYPGNREAILRICKA 87


>gi|78355787|ref|YP_387236.1| Fe-S oxidoreductase-like [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218192|gb|ABB37541.1| Fe-S oxidoreductases-like protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 379

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 13/91 (14%)

Query: 32  CN--LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           C   LW+   +   S  C +C   F            V  L D +  +            
Sbjct: 5   CPQILWNMTRKCNFS--CHYC--YFPHDNSPVSDSLPVAALLDFLRSRG-----GEWLVG 55

Query: 90  LTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
           LTGGEP +    V +  A+      I ++TN
Sbjct: 56  LTGGEPFIYPYFVDICSAIAAE-HRIGIDTN 85


>gi|260773725|ref|ZP_05882640.1| hypothetical pyruvate formate lyase activating enzyme [Vibrio
           metschnikovii CIP 69.14]
 gi|260610686|gb|EEX35890.1| hypothetical pyruvate formate lyase activating enzyme [Vibrio
           metschnikovii CIP 69.14]
          Length = 269

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 59/175 (33%), Gaps = 35/175 (20%)

Query: 25  VFCRFSGCNLWSGREQDRLS-AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           VF    GCN       +  + A+C   D+                 + D +E+ W     
Sbjct: 39  VFF-LQGCNYRCPACHNPQTIARCSE-DSQ-------------AMTVFDAVEQIWQRRHF 83

Query: 84  EGRYCVLTGGEPLLQVDVPLIQALNKR--------GFEIAVETNGTIEPPQGIDWICVSP 135
                 L+GGE  LQ  +  ++ L K              +++NG++       W  + P
Sbjct: 84  ITG-ITLSGGEASLQ--IEFVRELFKAVKTIPELSSLTCLLDSNGSLSLKH---WQSLLP 137

Query: 136 -KAGCDLKIKGGQELKLVFP---QVNVSPENYIGFDFERFSLQPMDGPFLEENTN 186
              G  + +K   E +  +      NV  +  + F  E   L  +    + E T+
Sbjct: 138 WMDGAMIDLKAWHE-RCHYQLTGHSNVPVKRSLHFLAEHGKLSEVRLLLIPEKTD 191


>gi|303277293|ref|XP_003057940.1| molybdopterin synthase CNX2 [Micromonas pusilla CCMP1545]
 gi|226460597|gb|EEH57891.1| molybdopterin synthase CNX2 [Micromonas pusilla CCMP1545]
          Length = 444

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 21/95 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C +C     G++   +      +++  L       G  + R   L
Sbjct: 136 CNL-----------RCLYC-MPEDGVELAPRSALLTSEEIVRLARLFVRAGVTKIR---L 180

Query: 91  TGGEPLLQVDVP----LIQALNKRGFE-IAVETNG 120
           TGGEP ++ D+      +  L   G E +A+ TNG
Sbjct: 181 TGGEPTIRADLEDIVSALSDLRADGLEDVAMTTNG 215


>gi|148378102|ref|YP_001252643.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum A str. ATCC 3502]
 gi|153931273|ref|YP_001382501.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum A str. ATCC 19397]
 gi|153934804|ref|YP_001386053.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum A str. Hall]
 gi|148287586|emb|CAL81651.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum A str. ATCC 3502]
 gi|152927317|gb|ABS32817.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum A str. ATCC 19397]
 gi|152930718|gb|ABS36217.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum A str. Hall]
          Length = 171

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 20/95 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           R  VF   SGC       Q++      FC           G + ++  +   IE      
Sbjct: 23  RSVVFV--SGCKHNCKECQNKEMQ--SFC----------YGDKISLKDILKRIESNVPL- 67

Query: 82  EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
               R    +GGEPL        L + +   G  I
Sbjct: 68  ---IRGVTFSGGEPLEHIKELSSLAEEIKSLGLNI 99


>gi|57237169|ref|YP_178181.1| molybdenum cofactor biosynthesis protein A [Campylobacter jejuni
           RM1221]
 gi|81557615|sp|Q5HX04|MOAA_CAMJR RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|57165973|gb|AAW34752.1| molybdenum cofactor biosynthesis protein [Campylobacter jejuni
           RM1221]
          Length = 320

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N        R + +C +C          K    + ++L   ++     G ++ R   +TG
Sbjct: 11  NYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLSFEELFLFVKAAMDEGIEKIR---ITG 67

Query: 93  GEPLLQVDVP-LIQALNK--RGFEIAVETNG 120
           GEPLL+ D+   I+ ++      ++A+ TNG
Sbjct: 68  GEPLLRKDLSIFIKMISDYKSDIDLAITTNG 98


>gi|291087830|ref|ZP_06347617.2| molybdenum cofactor biosynthesis protein A [Clostridium sp. M62/1]
 gi|291073722|gb|EFE11086.1| molybdenum cofactor biosynthesis protein A [Clostridium sp. M62/1]
          Length = 305

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 13/79 (16%)

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRG--FEIAVETNG-- 120
             ++L  + E     G    +   +TGGEPLL+ D P  I+ L       ++ + TNG  
Sbjct: 16  TYEELLLVAEASVGLGIDRFK---ITGGEPLLRKDCPDFIRRLKALPGVRQVTLTTNGLL 72

Query: 121 -----TIEPPQGIDWICVS 134
                      G+D + VS
Sbjct: 73  LPEHLEELLSAGLDGVNVS 91


>gi|147897677|gb|AAI40422.1| Molybdenum cofactor synthesis 1 [synthetic construct]
 gi|261857660|dbj|BAI45352.1| molybdenum cofactor synthesis 1 [synthetic construct]
          Length = 636

 Score = 35.8 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +       K      +++  L       G  + R   LT
Sbjct: 80  CNL-----------RCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGIDKIR---LT 125

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GGEPL++ D V ++  L +  G   I V TNG
Sbjct: 126 GGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNG 157


>gi|328952133|ref|YP_004369467.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452457|gb|AEB08286.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 363

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 17/96 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          A CR          G   G     +   L+++            +LT
Sbjct: 30  CNLAC--------AHCR-----AAAGMGPYEGELTTAEGKALLDD---VAGMGPAVIILT 73

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           GGEPLL+ D+  L       G  + +  NGT+  P+
Sbjct: 74  GGEPLLRKDIFELAAYGAGLGHRMVMAVNGTLLTPE 109


>gi|327399957|ref|YP_004340796.1| Radical SAM domain-containing protein [Archaeoglobus veneficus
           SNP6]
 gi|327315465|gb|AEA46081.1| Radical SAM domain protein [Archaeoglobus veneficus SNP6]
          Length = 431

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           +R + +C++C  ++              ++ D  +E                GEPL+  +
Sbjct: 55  NRCNFRCKYCIRNYWKADLLDMDLTMFRKILDSFDEVERLILYGF-------GEPLIHKN 107

Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           +  +  L K   E+ + TNG+I+  + +D +
Sbjct: 108 IVEMLDLAKSKSEVLLTTNGSIKLDKVVDKV 138


>gi|298673984|ref|YP_003725734.1| wyosine base formation domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298286972|gb|ADI72938.1| Wyosine base formation domain protein [Methanohalobium evestigatum
           Z-7303]
          Length = 311

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 76  EQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
           E+W+   K     +   GEP L   +P LI    K G    V TNGT  
Sbjct: 117 ERWMEANKPEHAAISLSGEPTLYPYLPELIDEFTKEGITTFVVTNGTRP 165


>gi|295402412|ref|ZP_06812366.1| molybdenum cofactor biosynthesis protein A [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294975575|gb|EFG51199.1| molybdenum cofactor biosynthesis protein A [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 340

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV----LTGGEPL 96
           D+ + +C +C      I G        D+L   IEE  +  E      V    +TGGEPL
Sbjct: 25  DQCNFRCVYC--MPAEIFGPNFRFLREDELL-TIEEMTLLAESFAELGVEKIRITGGEPL 81

Query: 97  LQVDVP-LIQALNK-RGFE-IAVETNG 120
           L+ D+   I+ L +  G   I + TNG
Sbjct: 82  LRRDLDVFIERLVRIPGIRDIGLTTNG 108


>gi|298529804|ref|ZP_07017207.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511240|gb|EFI35143.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 394

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            +       R + +C  C   +      +G    +     ++I +     +      + +
Sbjct: 40  PVVVWNMTRRCNLKCVHC---YAQALDEQGTDEIDTPAAKEIINDL---ADYGAPVMLFS 93

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPL++ D+  L      RG    + TNGT+
Sbjct: 94  GGEPLVRRDLVELASHAVGRGMRAVISTNGTL 125


>gi|218230941|ref|YP_002366857.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus B4264]
 gi|229150393|ref|ZP_04278610.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1550]
 gi|218158898|gb|ACK58890.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus B4264]
 gi|228633090|gb|EEK89702.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1550]
          Length = 306

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 53  DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-R 110
           D+  +Q         D++  L       G  + R   LTGGEPLL+ D+P LI  L K  
Sbjct: 9   DYAFLQEEC--LLTFDEIERLARLFISMGVNKIR---LTGGEPLLRKDLPKLIGRLAKLE 63

Query: 111 GFE-IAVETNG 120
           G + I + TNG
Sbjct: 64  GLKDIGLTTNG 74


>gi|118088023|ref|XP_419475.2| PREDICTED: similar to molybdenum cofactor synthesis-step 1 protein
           [Gallus gallus]
          Length = 724

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       ++ + +C++C     G+Q T        Q  ++I    +  ++      LTG
Sbjct: 116 NYLRISLTEKCNLRCQYC-MPEEGVQLTPKSELLTAQ--EIITLAGLFVKEGVEKIRLTG 172

Query: 93  GEPLLQVD-VPLIQAL-NKRGFE-IAVETNG 120
           GEPL++ D V ++  L    G + IAV TNG
Sbjct: 173 GEPLIRPDVVDIVGQLYKLEGLKTIAVTTNG 203


>gi|197098710|ref|NP_001126377.1| molybdenum cofactor biosynthesis protein 1 [Pongo abelii]
 gi|55731254|emb|CAH92341.1| hypothetical protein [Pongo abelii]
          Length = 385

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +       K      +++  L       G  + R   LT
Sbjct: 80  CNL-----------RCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGVDKIR---LT 125

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GGEPL++ D V ++  L +  G   I V TNG
Sbjct: 126 GGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNG 157


>gi|242280943|ref|YP_002993072.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242123837|gb|ACS81533.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 298

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 23/111 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL- 90
           CNL           +C++C        G +      + L  +++E      K  R   L 
Sbjct: 18  CNL-----------RCKWC----ALDHGKERKIMPREVLEKVMQELGSGVFKNLRRIDLH 62

Query: 91  TGGEPLLQVDVPLIQALNKRG-------FEIAVETNGTIEPPQGIDWICVS 134
            GGE LL  D+P + ++ +R          I + TNG +  P+  + IC S
Sbjct: 63  NGGETLLHPDLPGMLSVIRRHRPSIPSSVTIGLLTNGMLLTPKVSEQICRS 113


>gi|291326444|ref|ZP_06124517.2| molybdenum cofactor biosynthesis protein A [Providencia rettgeri
           DSM 1131]
 gi|291314204|gb|EFE54657.1| molybdenum cofactor biosynthesis protein A [Providencia rettgeri
           DSM 1131]
          Length = 372

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D  + +C +C    +       GR+    L ++        E       +TGGEP ++ D
Sbjct: 67  DVCNFRCTYC----LPDGYKPSGRHEFLTLDEIRRISTAFAELGTEKVRITGGEPTMRKD 122

Query: 101 V-PLIQALNKRG--FEIAVETNG 120
              +I A+N+     +IAV TNG
Sbjct: 123 FSDIIAAINENESIKKIAVTTNG 145


>gi|253701529|ref|YP_003022718.1| molybdenum cofactor biosynthesis protein A [Geobacter sp. M21]
 gi|251776379|gb|ACT18960.1| molybdenum cofactor biosynthesis protein A [Geobacter sp. M21]
          Length = 326

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 8/92 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLT 91
           N       DR + +C +C     G++  +     + ++L  +       G ++ R   +T
Sbjct: 12  NYLRLSVTDRCNMRCSYC-MPAQGVEKLEHKEMLSYEELYRVAGACIAQGIEKIR---VT 67

Query: 92  GGEPLLQV-DVPLIQALNK-RGF-EIAVETNG 120
           GGEPL++   VP ++ L++  G  E+ + TNG
Sbjct: 68  GGEPLVRKGLVPFLERLSRVPGLKELVLTTNG 99


>gi|145590325|ref|YP_001152327.1| putative molybdenum cofactor biosynthesis protein A [Pyrobaculum
           arsenaticum DSM 13514]
 gi|145282093|gb|ABP49675.1| GTP cyclohydrolase subunit MoaA [Pyrobaculum arsenaticum DSM 13514]
          Length = 310

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 90  LTGGEPLLQVDVPLIQA-LNKRGFEIAVETNG 120
           +TGGEPLL+ D+ LI A + K G  + V TNG
Sbjct: 63  ITGGEPLLRRDIDLIVANVAKTGAYVTVTTNG 94


>gi|16766405|ref|NP_462020.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|197265423|ref|ZP_03165497.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|16421657|gb|AAL21979.1| putative oxidase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|197243678|gb|EDY26298.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|312914126|dbj|BAJ38100.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321225777|gb|EFX50831.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
          Length = 378

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L DL  +      +E +   + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLDADVAWAQGREVKTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L              EI +E N GT+E  + ID+
Sbjct: 66  GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113


>gi|16128749|ref|NP_415302.1| molybdopterin biosynthesis protein A [Escherichia coli str. K-12
           substr. MG1655]
 gi|89107632|ref|AP_001412.1| molybdopterin biosynthesis protein A [Escherichia coli str. K-12
           substr. W3110]
 gi|170080440|ref|YP_001729760.1| molybdopterin biosynthesis protein A [Escherichia coli str. K-12
           substr. DH10B]
 gi|238900040|ref|YP_002925836.1| molybdopterin biosynthesis protein A [Escherichia coli BW2952]
 gi|266540|sp|P30745|MOAA_ECOLI RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|226704854|sp|B1X7B1|MOAA_ECODH RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|259495864|sp|C4ZXV3|MOAA_ECOBW RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|42008|emb|CAA49861.1| moaA [Escherichia coli K-12]
 gi|1651354|dbj|BAA35439.1| molybdopterin biosynthesis protein A [Escherichia coli str. K12
           substr. W3110]
 gi|1786999|gb|AAC73868.1| molybdopterin biosynthesis protein A [Escherichia coli str. K-12
           substr. MG1655]
 gi|169888275|gb|ACB01982.1| molybdopterin biosynthesis protein A [Escherichia coli str. K-12
           substr. DH10B]
 gi|238861799|gb|ACR63797.1| molybdopterin biosynthesis protein A [Escherichia coli BW2952]
 gi|260450072|gb|ACX40494.1| molybdenum cofactor biosynthesis protein A [Escherichia coli DH1]
 gi|315135431|dbj|BAJ42590.1| molybdenum cofactor biosynthesis protein A [Escherichia coli DH1]
          Length = 329

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFARLGTEKVR---LTGGEPSLR 77

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 78  RDFTDIIAAVRENDAIRQIAVTTNG 102


>gi|67924395|ref|ZP_00517824.1| Radical SAM [Crocosphaera watsonii WH 8501]
 gi|67853756|gb|EAM49086.1| Radical SAM [Crocosphaera watsonii WH 8501]
          Length = 338

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
                 + GGEPLL   +  +++ L +R   + + TN  I   + +     SP     + 
Sbjct: 72  GAPVVSIPGGEPLLHPQIDEIVKGLVERKKFVYLCTN-AILLEKSLHKFEPSPYFCFSVH 130

Query: 143 IKGGQE 148
           + G +E
Sbjct: 131 LDGLRE 136


>gi|300920028|ref|ZP_07136487.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           115-1]
 gi|300412975|gb|EFJ96285.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           115-1]
          Length = 352

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 45  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 100

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 101 RDFTDIIAAVRENDAIRQIAVTTNG 125


>gi|297521490|ref|ZP_06939876.1| molybdenum cofactor biosynthesis protein A [Escherichia coli OP50]
          Length = 267

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 78  RDFTDIIAAVRENDAIRQIAVTTNG 102


>gi|269215652|ref|ZP_06159506.1| radical SAM domain protein [Slackia exigua ATCC 700122]
 gi|269131139|gb|EEZ62214.1| radical SAM domain protein [Slackia exigua ATCC 700122]
          Length = 886

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL     +     +       + G       +  +D +A + +             ++T
Sbjct: 84  CNLACAHCRAAAHCE------AYPGELSLDECKAVMDDIASITD----------PILIVT 127

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPL++ D+  +I    + G    + TNGT+
Sbjct: 128 GGEPLMRPDIWEIIDYAFEVGLHPVIGTNGTL 159


>gi|312112039|ref|YP_003990355.1| molybdenum cofactor biosynthesis protein A [Geobacillus sp.
           Y4.1MC1]
 gi|311217140|gb|ADP75744.1| molybdenum cofactor biosynthesis protein A [Geobacillus sp.
           Y4.1MC1]
          Length = 340

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV----LTGGEPL 96
           D+ + +C +C      I G        D+L   IEE  +  E      V    +TGGEPL
Sbjct: 25  DQCNFRCVYC--MPAEIFGPNFRFLREDELL-TIEEMTLLAESFAELGVEKIRITGGEPL 81

Query: 97  LQVDVP-LIQALNK-RGFE-IAVETNG 120
           L+ D+   I+ L +  G   I + TNG
Sbjct: 82  LRRDLDVFIERLVRIPGIRDIGLTTNG 108


>gi|229495601|ref|ZP_04389334.1| coenzyme PQQ synthesis protein E [Porphyromonas endodontalis ATCC
           35406]
 gi|229317584|gb|EEN83484.1| coenzyme PQQ synthesis protein E [Porphyromonas endodontalis ATCC
           35406]
          Length = 366

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 14/90 (15%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL          + C   D+D            + ++   +++      +      + T
Sbjct: 41  CNLACKHC----GSDCHV-DSD--------AKELSGEEFLRVVDSITPHVDPHKVLVIFT 87

Query: 92  GGEPLLQVDVPLI-QALNKRGFEIAVETNG 120
           GGE L++ D+  I   L +RG+   + TNG
Sbjct: 88  GGEALVRQDLDAIGLELYRRGYPWGLVTNG 117


>gi|228986654|ref|ZP_04146784.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228772985|gb|EEM21421.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 307

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 13/85 (15%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
           +     + D++  +       G ++ R   +TGGEPLL+  +P LI  LNK  G E I +
Sbjct: 14  SNDKILSFDEIERITRIFVSLGVRKLR---ITGGEPLLRRGLPQLIGRLNKIDGVEDIGL 70

Query: 117 ETNGTIEPPQGIDW-------ICVS 134
            TNG++      D        + VS
Sbjct: 71  TTNGSLLKKFAPDLYKAGLSRVTVS 95


>gi|227488457|ref|ZP_03918773.1| pyruvate radical-activating enzyme [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227543068|ref|ZP_03973117.1| pyruvate radical-activating enzyme [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227091671|gb|EEI26983.1| pyruvate radical-activating enzyme [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227181290|gb|EEI62262.1| pyruvate radical-activating enzyme [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 215

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 38/127 (29%), Gaps = 30/127 (23%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
              VF   +GC              C +C          +  R         + E     
Sbjct: 22  TATVF--TTGCP-----------WACVYC-----HNPALQDPRGQTTSTMAEVLELAAAR 63

Query: 82  EKEGRYCVLTGGEPLLQVDVP-LIQALNKRG--FEIAVETNGTIE---------PPQGID 129
            +     V +GGEP +   +P  I+A+      F I + T G +          P    D
Sbjct: 64  RRLLDGVVFSGGEPTMHRGLPDAIRAVRATEPTFGIGLHTCGYLPERLRSLVEDPSTCPD 123

Query: 130 WICVSPK 136
           WI +  K
Sbjct: 124 WIGLDVK 130


>gi|197121329|ref|YP_002133280.1| radical SAM protein [Anaeromyxobacter sp. K]
 gi|196171178|gb|ACG72151.1| Radical SAM domain protein [Anaeromyxobacter sp. K]
          Length = 357

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 19/123 (15%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C +     +     R     LA  + E+   G         T
Sbjct: 34  CNLACAM--------CP-CGSARARGRPRSPPRRMAPALAAGVLEERR-GSPLRELIPST 83

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
            GEPLL   +P L+      G    V TNGT        W         ++ +   +++K
Sbjct: 84  MGEPLLWPALPDLLARAATLGIRGNVTTNGTFPGRGAAGW--------AEVLVPACRDVK 135

Query: 151 LVF 153
           + +
Sbjct: 136 ISW 138


>gi|194734759|ref|YP_002116892.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197301053|ref|ZP_02663477.2| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194710261|gb|ACF89482.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197288715|gb|EDY28090.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 447

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GC++ +       +  C +C   + + +  +  K  R + + L   I +       +  
Sbjct: 20  AGCHVMTKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 79

Query: 87  YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120
                GGEP + + +P    + AL ++   G +I  A++TNG
Sbjct: 80  DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 120


>gi|170757568|ref|YP_001779721.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum B1 str. Okra]
 gi|169122780|gb|ACA46616.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum B1 str. Okra]
          Length = 171

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 20/95 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           R  VF   SGC       Q++      FC           G + ++  +   IE      
Sbjct: 23  RSVVFV--SGCKHNCKECQNKEMQ--SFC----------YGDKISLKDILKRIESNVPL- 67

Query: 82  EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
               R    +GGEPL        L + +   G  I
Sbjct: 68  ---IRGVTFSGGEPLEHIKELSSLAEEIKSLGLNI 99


>gi|153938755|ref|YP_001389458.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum F str. Langeland]
 gi|152934651|gb|ABS40149.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum F str. Langeland]
 gi|295317562|gb|ADF97939.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum F str. 230613]
          Length = 174

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 20/95 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           R  VF   SGC       Q++      FC           G + ++  +   IE      
Sbjct: 23  RSVVFV--SGCKHNCKECQNKEMQ--SFC----------YGDKISLKDILKRIESNVPL- 67

Query: 82  EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
               R    +GGEPL        L + +   G  I
Sbjct: 68  ---IRGVTFSGGEPLEHIKELSSLAEEIKSLGLNI 99


>gi|26246752|ref|NP_752792.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           CFT073]
 gi|188494750|ref|ZP_03002020.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 53638]
 gi|26107151|gb|AAN79335.1|AE016757_239 Molybdenum cofactor biosynthesis protein A [Escherichia coli
           CFT073]
 gi|188489949|gb|EDU65052.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 53638]
 gi|332104728|gb|EGJ08074.1| molybdenum cofactor biosynthesis protein A [Shigella sp. D9]
          Length = 356

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 49  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 104

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 105 RDFTDIIAAVRENDAIRQIAVTTNG 129


>gi|327311840|ref|YP_004338737.1| Radical SAM domain-containing protein [Thermoproteus uzoniensis
           768-20]
 gi|326948319|gb|AEA13425.1| Radical SAM domain protein [Thermoproteus uzoniensis 768-20]
          Length = 372

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 16/73 (21%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F  F+GCN            +C FC    +  +   G       LA +       G +
Sbjct: 153 TIF--FAGCNF-----------RCAFCQNWDISQRPENGAEATPRHLALIQIRLRAEGAR 199

Query: 84  EGRYCVLTGGEPL 96
              +    GGEP 
Sbjct: 200 NINWV---GGEPT 209


>gi|291547425|emb|CBL20533.1| GTP cyclohydrolase subunit MoaA [Ruminococcus sp. SR1/5]
          Length = 302

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAVETN 119
            R  + Q  +++    +  E   R   LTGGEPL++  +P L++ L    G E + + TN
Sbjct: 10  ERSLILQEEEILRICRVMAELGIRKIKLTGGEPLVRPRMPQLVEKLKNMPGIEKVTLTTN 69

Query: 120 GTIEPPQGIDW 130
           G +   Q  D+
Sbjct: 70  GVLLKDQMSDF 80


>gi|268323533|emb|CBH37121.1| putative L-lysine 2,3-aminomutase [uncultured archaeon]
          Length = 515

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
           CRFC        G    R   +Q+   IE  +I   +E R  +++GG+PLL  D  L   
Sbjct: 110 CRFC--TRKRRVGDPFKRIKKEQVLQGIE--YIREREEIRDVLISGGDPLLLNDDELAFF 165

Query: 107 LNKRGFEIAVE 117
           L +      VE
Sbjct: 166 LERLKKIKHVE 176


>gi|256811140|ref|YP_003128509.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
 gi|256794340|gb|ACV25009.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
          Length = 280

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 26/97 (26%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C   +V  +  K    +     + I+       K       T
Sbjct: 12  CNL-----------NCIYC---YVNNKDNKD--MDFKTAKNAIDYLLSLDNKIK--IQFT 53

Query: 92  GGEPLLQVDVPLIQALNK------RGFEIAVETNGTI 122
           GGEPLL  +  LI+ +             A++TNGT+
Sbjct: 54  GGEPLL--NFKLIEKVVDYCDNLNANISYAIQTNGTL 88


>gi|296123595|ref|YP_003631373.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Planctomyces limnophilus DSM 3776]
 gi|296015935|gb|ADG69174.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Planctomyces limnophilus DSM 3776]
          Length = 402

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 79  ITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKA 137
              E       + GGEPLL   +  ++  L  R   + + TN  I   + +     SP  
Sbjct: 67  AADECGAPVISIPGGEPLLHPQIGEIVAGLVARKKFVYLCTN-AILLEKHLHKFQPSPYL 125

Query: 138 GCDLKIKGGQE 148
              + + G QE
Sbjct: 126 TFSIHLDGPQE 136


>gi|189219894|ref|YP_001940535.1| Molybdenum cofactor biosynthesis enzyme [Methylacidiphilum
           infernorum V4]
 gi|189186752|gb|ACD83937.1| Molybdenum cofactor biosynthesis enzyme [Methylacidiphilum
           infernorum V4]
          Length = 337

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 5/85 (5%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C    +G    K  + + ++L  ++       +   R   +TGGEPL++  
Sbjct: 30  DRCNERCIYCFPQDLGFLSKKDSQLSFEELYAVV--FHGAMKHGFRDFRITGGEPLVRKG 87

Query: 101 -VPLIQAL-NKRGF-EIAVETNGTI 122
            +  I+ L    G   + + TNGT+
Sbjct: 88  TLAFIRRLTRTPGISSVRLSTNGTL 112


>gi|167518722|ref|XP_001743701.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777663|gb|EDQ91279.1| predicted protein [Monosiga brevicollis MX1]
          Length = 353

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 25/96 (26%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV-DQLADLIEEQWITGEKEGRYCV- 89
           CNL           +C++C           G +    ++L    E Q +           
Sbjct: 49  CNL-----------RCQYC-------MPEDGIKLTASERLISFEERQQLAALFGRMGVTK 90

Query: 90  --LTGGEPLLQV-DVPLIQALNKRGF--EIAVETNG 120
             LTGGEPL+    V ++++L       E+ + TNG
Sbjct: 91  FRLTGGEPLVYPRLVEVVESLKALPNTTEVNMTTNG 126


>gi|118470199|ref|YP_886346.1| acyl-CoA synthase [Mycobacterium smegmatis str. MC2 155]
 gi|118171486|gb|ABK72382.1| acyl-CoA synthase [Mycobacterium smegmatis str. MC2 155]
          Length = 515

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 10/91 (10%)

Query: 32  CNLWSGREQDRLSAQCRFC----DTDFVGIQGTKGGRYN---VDQLADLIEEQWITGEKE 84
           CN W        +     C    D+  +      GG  +      +  +I E        
Sbjct: 210 CNGWCFTWAVGAAGGTHICLRKIDSAEIWRWLRGGGITHFSAAPTVLTMIAEDPSAQPLP 269

Query: 85  GRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
            R  V TGG P       L+  L   GF++ 
Sbjct: 270 ARVHVDTGGAP---PSPALLARLTPLGFDVT 297


>gi|154245743|ref|YP_001416701.1| pyrroloquinoline quinone biosynthesis protein PqqE [Xanthobacter
           autotrophicus Py2]
 gi|154159828|gb|ABS67044.1| coenzyme PQQ biosynthesis protein E [Xanthobacter autotrophicus
           Py2]
          Length = 391

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 6/80 (7%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R   +C +C       +       +      ++ E    G     +  L+GGEP  + D+
Sbjct: 35  RCPLRCPYCSNPLELERRE--AELDTATWKRVLSEAAALG---VLHVHLSGGEPTARADL 89

Query: 102 -PLIQALNKRGFEIAVETNG 120
             L       G    + T+G
Sbjct: 90  VELTAHCAAEGLYTNLITSG 109


>gi|115523997|ref|YP_780908.1| molybdenum cofactor biosynthesis protein A [Rhodopseudomonas
           palustris BisA53]
 gi|115517944|gb|ABJ05928.1| GTP cyclohydrolase subunit MoaA [Rhodopseudomonas palustris BisA53]
          Length = 343

 Score = 35.8 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+     +     +++L  L       G ++ R   LTGGEPL+
Sbjct: 32  DRCDFRCAYCMSEDMTFL----PRADLLTLEELDRLCSTFIAKGVRKLR---LTGGEPLV 84

Query: 98  QVD-VPLIQAL---NKRG--FEIAVETNGT 121
           + + + L+++L      G   E+ + TNG+
Sbjct: 85  RRNMISLVRSLSRHLDSGALHELTLTTNGS 114


>gi|331676515|ref|ZP_08377211.1| molybdenum cofactor biosynthesis protein A [Escherichia coli H591]
 gi|331075204|gb|EGI46502.1| molybdenum cofactor biosynthesis protein A [Escherichia coli H591]
          Length = 354

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 47  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 102

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 103 RDFTDIIAAVRENDAIRQIAVTTNG 127


>gi|331651784|ref|ZP_08352803.1| molybdenum cofactor biosynthesis protein A [Escherichia coli M718]
 gi|331050062|gb|EGI22120.1| molybdenum cofactor biosynthesis protein A [Escherichia coli M718]
          Length = 354

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 47  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 102

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 103 RDFTDIIAAVRENDAIRQIAVTTNG 127


>gi|331641294|ref|ZP_08342429.1| molybdenum cofactor biosynthesis protein A [Escherichia coli H736]
 gi|331038092|gb|EGI10312.1| molybdenum cofactor biosynthesis protein A [Escherichia coli H736]
          Length = 354

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 47  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 102

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 103 RDFTDIIAAVRENDAIRQIAVTTNG 127


>gi|323967379|gb|EGB62800.1| molybdenum coproteinbiosynthesis protein A [Escherichia coli M863]
 gi|323976834|gb|EGB71922.1| molybdenum coproteinbiosynthesis protein A [Escherichia coli
           TW10509]
          Length = 354

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 47  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 102

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 103 RDFTDIIAAVRENDAIRQIAVTTNG 127


>gi|325967917|ref|YP_004244109.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28]
 gi|323707120|gb|ADY00607.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 572

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 19/115 (16%)

Query: 30  SGCNLWSGREQD----------RLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQW 78
            GC L    + +          R + +C  C   F             ++Q+  ++    
Sbjct: 141 QGCGLCPVHKTNTVLAIIDVTNRCNMKCPVC---FANAYAAGYVYEPTLEQIEYMLRTLR 197

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-RGFEIAVE--TNGTIEPPQGIDW 130
                       +GGEP L+ D+P I  + K  GF+  +E  TNG I     ID+
Sbjct: 198 AQKPWAPNAIQFSGGEPTLRNDLPEIIRMAKILGFD-HIEVNTNG-IRIANDIDY 250


>gi|310779097|ref|YP_003967430.1| molybdenum cofactor biosynthesis protein A [Ilyobacter polytropus
           DSM 2926]
 gi|309748420|gb|ADO83082.1| molybdenum cofactor biosynthesis protein A [Ilyobacter polytropus
           DSM 2926]
          Length = 315

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 19/92 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C             R +     +++       +   +    T
Sbjct: 20  CNL-----------RCIYC-----KPDECIEARRDPMTKREVVSMVKAMADLGVKKVRFT 63

Query: 92  GGEPLLQVDV-PLIQALNK-RGF-EIAVETNG 120
           GGEPLL+ D+  +I  ++K  G  +IA+ TNG
Sbjct: 64  GGEPLLRKDITEIISEVSKIEGIDDIALTTNG 95


>gi|308051310|ref|YP_003914876.1| molybdenum cofactor biosynthesis protein A [Ferrimonas balearica
           DSM 9799]
 gi|307633500|gb|ADN77802.1| molybdenum cofactor biosynthesis protein A [Ferrimonas balearica
           DSM 9799]
          Length = 328

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 65/166 (39%), Gaps = 29/166 (17%)

Query: 41  DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           D    +C +C D D   +   +     +++L  + +     G ++ R   LTGGEPL++ 
Sbjct: 20  DHCDFRCVYCMDEDPTFL--PRDQVLTLEELHQIAQAFTELGVEKIR---LTGGEPLVKS 74

Query: 100 DVP-LIQALNKR-GFE-IAVETNGT----IEPPQG--------IDWICVSPKAGCDLKIK 144
           D+  L++ +    G   + + TNG+       P          I    + P+      + 
Sbjct: 75  DLTYLVEQVAALPGLRDLCLTTNGSRLKKFAQPLQAAGLKRINISLDTLDPERFT--AVT 132

Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQ--PMDGPFLEENTNLA 188
              +L+ V   ++ + E      FER  L    M G   +E  +L 
Sbjct: 133 RNGKLERVLAGIDAAIEA----GFERIKLNTVAMKGSNDDEILDLV 174


>gi|300822935|ref|ZP_07103070.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           119-7]
 gi|300524476|gb|EFK45545.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           119-7]
          Length = 352

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 45  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 100

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 101 RDFTDIIAAVRENDAIRQIAVTTNG 125


>gi|300957728|ref|ZP_07169915.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           175-1]
 gi|300315544|gb|EFJ65328.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           175-1]
          Length = 352

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 45  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 100

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 101 RDFTDIIAAVRENDAIRQIAVTTNG 125


>gi|295702571|ref|YP_003595646.1| hypothetical protein BMD_0385 [Bacillus megaterium DSM 319]
 gi|294800230|gb|ADF37296.1| conserved hypothetical protein [Bacillus megaterium DSM 319]
          Length = 372

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D +   ++E         R   +TGGEP++ +      
Sbjct: 42  RCEHCAVGYT-LQPKDPNALPLDLILKRLDEI-----PTLRALSITGGEPMMSLSSVKNY 95

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
            VPL++  ++RG    + +N T++ 
Sbjct: 96  VVPLLKYAHERGVRTQINSNLTLDL 120


>gi|281177917|dbj|BAI54247.1| molybdopterin biosynthesis protein A [Escherichia coli SE15]
          Length = 340

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 33  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 88

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 89  RDFTDIIAAVRENDAIRQIAVTTNG 113


>gi|227884257|ref|ZP_04002062.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 83972]
 gi|300816426|ref|ZP_07096648.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           107-1]
 gi|300907109|ref|ZP_07124775.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           84-1]
 gi|300922805|ref|ZP_07138891.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           182-1]
 gi|300929417|ref|ZP_07144886.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           187-1]
 gi|300939816|ref|ZP_07154454.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           21-1]
 gi|300993256|ref|ZP_07180303.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           45-1]
 gi|301020728|ref|ZP_07184796.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           69-1]
 gi|301051300|ref|ZP_07198126.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           185-1]
 gi|301306932|ref|ZP_07212976.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           124-1]
 gi|309797958|ref|ZP_07692337.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           145-7]
 gi|227839009|gb|EEJ49475.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 83972]
 gi|300297059|gb|EFJ53444.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           185-1]
 gi|300398539|gb|EFJ82077.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           69-1]
 gi|300401154|gb|EFJ84692.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           84-1]
 gi|300406664|gb|EFJ90202.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           45-1]
 gi|300420837|gb|EFK04148.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           182-1]
 gi|300455348|gb|EFK18841.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           21-1]
 gi|300462617|gb|EFK26110.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           187-1]
 gi|300531116|gb|EFK52178.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           107-1]
 gi|300837858|gb|EFK65618.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           124-1]
 gi|308118446|gb|EFO55708.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           145-7]
 gi|315257767|gb|EFU37735.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           85-1]
 gi|315292589|gb|EFU51941.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           153-1]
 gi|315299288|gb|EFU58540.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           16-3]
 gi|324018559|gb|EGB87778.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           117-3]
          Length = 352

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 45  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 100

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 101 RDFTDIIAAVRENDAIRQIAVTTNG 125


>gi|297200835|ref|ZP_06918232.1| radical SAM domain-containing protein [Streptomyces sviceus ATCC
           29083]
 gi|197712406|gb|EDY56440.1| radical SAM domain-containing protein [Streptomyces sviceus ATCC
           29083]
          Length = 383

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 37/108 (34%), Gaps = 14/108 (12%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL              +        +         DQLA  I E             L 
Sbjct: 18  CNLACDHCYVYELLDRTW------RHKPAVMANGTADQLARRIAEHARRHALSRVRVTLH 71

Query: 92  GGEPLLQ---VDVPLIQALNK--RG---FEIAVETNGTIEPPQGIDWI 131
           GGEPL+        L++ L +  RG    +I+V++N T+  P  +D  
Sbjct: 72  GGEPLMAGRSRIEHLLKVLREELRGTAVCDISVQSNVTLLNPSWMDLF 119


>gi|161616068|ref|YP_001590033.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|168242907|ref|ZP_02667839.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|194450201|ref|YP_002047092.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205354027|ref|YP_002227828.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858365|ref|YP_002245016.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|238909902|ref|ZP_04653739.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|161365432|gb|ABX69200.1| hypothetical protein SPAB_03869 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194408505|gb|ACF68724.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|205273808|emb|CAR38803.1| possible oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|205338001|gb|EDZ24765.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|206710168|emb|CAR34524.1| possible oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|326629140|gb|EGE35483.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 378

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L DL  +      +E +   + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLDADVAWAQGREVKTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L              EI +E N GT+E  + ID+
Sbjct: 66  GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113


>gi|170020863|ref|YP_001725817.1| molybdenum cofactor biosynthesis protein A [Escherichia coli ATCC
           8739]
 gi|169755791|gb|ACA78490.1| molybdenum cofactor biosynthesis protein A [Escherichia coli ATCC
           8739]
 gi|307552626|gb|ADN45401.1| molybdenum cofactor biosynthesis protein A [Escherichia coli ABU
           83972]
          Length = 340

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 33  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 88

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 89  RDFTDIIAAVRENDAIRQIAVTTNG 113


>gi|117622964|ref|YP_851877.1| molybdenum cofactor biosynthesis protein A [Escherichia coli APEC
           O1]
 gi|115512088|gb|ABJ00163.1| molybdenum cofactor biosynthesis protein A [Escherichia coli APEC
           O1]
          Length = 354

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 47  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 102

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 103 RDFTDIIAAVRENDAIRQIAVTTNG 127


>gi|326942510|gb|AEA18406.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 337

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L +     G ++ R   +TG
Sbjct: 22  DRCNFRCTYCMPAEIFGPD--YAFLKDEF--LLTFDEIERLAKLFVNIGVRKIR---ITG 74

Query: 93  GEPLLQVDVP-LIQALNKRG--FEIAVETN 119
           GEPLL+ D+  LI  L K     +I + TN
Sbjct: 75  GEPLLRKDLAKLIARLVKIDGLIDIGLTTN 104


>gi|324114345|gb|EGC08314.1| molybdenum coproteinbiosynthesis protein A [Escherichia fergusonii
           B253]
          Length = 354

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 47  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 102

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 103 RDFTDIIAAVRENDAIRQIAVTTNG 127


>gi|331645998|ref|ZP_08347101.1| molybdenum cofactor biosynthesis protein A [Escherichia coli M605]
 gi|331672292|ref|ZP_08373083.1| molybdenum cofactor biosynthesis protein A [Escherichia coli TA280]
 gi|331682288|ref|ZP_08382907.1| molybdenum cofactor biosynthesis protein A [Escherichia coli H299]
 gi|323947062|gb|EGB43075.1| molybdenum coprotein biosynthesis protein A [Escherichia coli H120]
 gi|323963028|gb|EGB58599.1| molybdenum coproteinbiosynthesis protein A [Escherichia coli H489]
 gi|324116204|gb|EGC10126.1| molybdenum coproteinbiosynthesis protein A [Escherichia coli E1167]
 gi|331044750|gb|EGI16877.1| molybdenum cofactor biosynthesis protein A [Escherichia coli M605]
 gi|331070487|gb|EGI41851.1| molybdenum cofactor biosynthesis protein A [Escherichia coli TA280]
 gi|331079919|gb|EGI51098.1| molybdenum cofactor biosynthesis protein A [Escherichia coli H299]
          Length = 354

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 47  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 102

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 103 RDFTDIIAAVRENDAIRQIAVTTNG 127


>gi|315287194|gb|EFU46606.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           110-3]
          Length = 352

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 45  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 100

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 101 RDFTDIIAAVRENDAIRQIAVTTNG 125


>gi|301327973|ref|ZP_07221138.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           78-1]
 gi|300845538|gb|EFK73298.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           78-1]
          Length = 352

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 45  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 100

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 101 RDFTDIIAAVRENDAIRQIAVTTNG 125


>gi|325679924|ref|ZP_08159493.1| radical SAM domain protein [Ruminococcus albus 8]
 gi|324108362|gb|EGC02609.1| radical SAM domain protein [Ruminococcus albus 8]
          Length = 366

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 25/100 (25%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            S CNL          ++C                + + +    + +E  + G     + 
Sbjct: 69  TSKCNLHCAGCY----SRCS-----NATNDAEPVKQLSAEDWLRIFDEADVLG---ISFI 116

Query: 89  VLTGGEPLLQVDVPLIQALNKRG------FEIAVETNGTI 122
           +L GGEP+L+ D+     +   G      F I   TNGT 
Sbjct: 117 LLAGGEPMLRRDI-----IEAAGRKQNILFPIF--TNGTY 149


>gi|224823898|ref|ZP_03697007.1| coenzyme PQQ biosynthesis protein E [Lutiella nitroferrum 2002]
 gi|224604353|gb|EEG10527.1| coenzyme PQQ biosynthesis protein E [Lutiella nitroferrum 2002]
          Length = 369

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R   +C +C         +     +  +   +++E    G  +  +   +GGEP+ + D+
Sbjct: 19  RCPLRCAYCSNPLALTPAS--AELSTAEWCAILDEAAEMGMLQVHF---SGGEPMARADL 73

Query: 102 P-LIQALNKRGFEIAVETNGTI 122
           P L+   ++ G    + T+G +
Sbjct: 74  PELVAHASRLGLYSNLITSGVL 95


>gi|254427251|ref|ZP_05040958.1| molybdenum cofactor biosynthesis protein A [Alcanivorax sp. DG881]
 gi|196193420|gb|EDX88379.1| molybdenum cofactor biosynthesis protein A [Alcanivorax sp. DG881]
          Length = 337

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 23/102 (22%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            R S          DR   +C +C    +    T   R  V  L ++     +  +   +
Sbjct: 23  VRLS--------VTDRCDFRCVYC----MAEDMTFVPRAQVLTLEEMGRLARVLVQLGVK 70

Query: 87  YCVLTGGEPLLQVDVP-------LIQALNKRGFEIAVETNGT 121
              LTGGEPL++ DV         I  L +        TNG 
Sbjct: 71  RIRLTGGEPLVRRDVARLVHDIGAIDGLRELNMT----TNGA 108


>gi|150006239|ref|YP_001300983.1| putative Fe-S oxidoreductase [Bacteroides vulgatus ATCC 8482]
 gi|149934663|gb|ABR41361.1| putative Fe-S oxidoreductase [Bacteroides vulgatus ATCC 8482]
          Length = 445

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 18/93 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C+ C         +     N   L D ++      E  G +   +
Sbjct: 111 CNL-----------KCKHC------FMLSGKKLENELTLEDWMKVLTSFKENGGEFVTFS 153

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
           GGEPL+  + P +I   +  G +  V +NG + 
Sbjct: 154 GGEPLMFKNFPQIISHAHDLGLKSTVLSNGLLW 186


>gi|119474896|ref|ZP_01615249.1| pyrroloquinoline quinone biosynthesis protein PqqE [marine gamma
           proteobacterium HTCC2143]
 gi|119451099|gb|EAW32332.1| pyrroloquinoline quinone biosynthesis protein PqqE [marine gamma
           proteobacterium HTCC2143]
          Length = 378

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 33  NLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW   E       QC +C ++ V    ++    +  Q  D+++     G  +     L+
Sbjct: 16  PLWLLAELSYACPLQCSYC-SNPVNYHESRSRELSTQQWKDVLKAGRKLGAVQLG---LS 71

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETN 119
           GGEPL+ Q    ++      GF   + T+
Sbjct: 72  GGEPLVRQDLEEIVAEARGLGFYSNLITS 100


>gi|110804782|ref|YP_688302.1| molybdenum cofactor biosynthesis protein A [Shigella flexneri 5
           str. 8401]
 gi|110614330|gb|ABF02997.1| molybdopterin biosynthesis, protein A [Shigella flexneri 5 str.
           8401]
          Length = 340

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 33  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 88

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 89  RDFTDIIAAVRENDAIRQIAVTTNG 113


>gi|91209811|ref|YP_539797.1| molybdenum cofactor biosynthesis protein A [Escherichia coli UTI89]
 gi|237707261|ref|ZP_04537742.1| molybdenum cofactor biosynthesis protein A [Escherichia sp.
           3_2_53FAA]
 gi|91071385|gb|ABE06266.1| molybdenum cofactor biosynthesis protein A [Escherichia coli UTI89]
 gi|226898471|gb|EEH84730.1| molybdenum cofactor biosynthesis protein A [Escherichia sp.
           3_2_53FAA]
          Length = 356

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 49  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 104

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 105 RDFTDIIAAVRENDAIRQIAVTTNG 129


>gi|8101028|gb|AAF72521.1|AF248951_2 iron-sulfur oxidoreductase MdsB [Prevotella sp. RS2]
          Length = 419

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 26/103 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQ---GTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           CNL           +C +C   ++  Q     +G +   D+L +    ++I  +      
Sbjct: 34  CNL-----------RCDYC--YYLEKQHLYANEGRQMLSDELLERFIREYIESQTTPE-V 79

Query: 89  VLT--GGEPLLQVDV--PLIQALN---KRGFEIA--VETNGTI 122
           + T  GGEPL++       +  L     RG  IA  ++TNGT+
Sbjct: 80  LFTWHGGEPLVRPLAFYEKVVRLQQRYARGRRIANSLQTNGTL 122


>gi|88800258|ref|ZP_01115825.1| Molybdenum cofactor biosynthesis enzyme [Reinekea sp. MED297]
 gi|88776973|gb|EAR08181.1| Molybdenum cofactor biosynthesis enzyme [Reinekea sp. MED297]
          Length = 322

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 22/114 (19%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRY-NVDQLADLIEEQ 77
           GR   + R S          D  + +C +C  D    G QG     + +  +L   +   
Sbjct: 7   GRRFYYLRLS--------VTDVCNFRCSYCLPD----GYQGKPDEAFLSASELEAAVRGF 54

Query: 78  WITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GF-EIAVETNGTIEPPQGI 128
              G ++ R   LTGGEP L+ D+P +I  LN+  G   IAV TNG  + PQ I
Sbjct: 55  AQMGTQKIR---LTGGEPGLRSDLPEIIYRLNRIDGINNIAVTTNG-YKLPQRI 104


>gi|300947139|ref|ZP_07161353.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           116-1]
 gi|301646210|ref|ZP_07246106.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           146-1]
 gi|300453217|gb|EFK16837.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           116-1]
 gi|301075547|gb|EFK90353.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           146-1]
          Length = 352

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 45  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 100

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 101 RDFTDIIAAVRENDAIRQIAVTTNG 125


>gi|225874487|ref|YP_002755946.1| molybdenum cofactor biosynthesis protein A [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793142|gb|ACO33232.1| molybdenum cofactor biosynthesis protein A [Acidobacterium
           capsulatum ATCC 51196]
          Length = 342

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 22/109 (20%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP----- 95
           DR + +C +C T      GT+G ++    +AD +    I          LTGGEP     
Sbjct: 32  DRCNYKCVYCRT------GTEGAQFAELPIADYLRLIRIFVSLGIEKVRLTGGEPLLRHG 85

Query: 96  ---LLQVDVPLIQALNKRGFEIAVETNGTIEPP-------QGIDWICVS 134
              LL+   PL + L+    ++A+ TNG +           G+  + VS
Sbjct: 86  LLDLLRELKPL-RTLDGAPLDLALTTNGHLLASMAEPLREAGLQRVTVS 133


>gi|254502945|ref|ZP_05115096.1| molybdenum cofactor biosynthesis protein A [Labrenzia alexandrii
           DFL-11]
 gi|222439016|gb|EEE45695.1| molybdenum cofactor biosynthesis protein A [Labrenzia alexandrii
           DFL-11]
          Length = 351

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 22/93 (23%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+     K    ++++L  L       G ++ R   LTGGEPL+
Sbjct: 40  DRCDFRCVYCMAEDMTFL----PKREVLSLEELDRLCTAFIEKGVRKLR---LTGGEPLV 92

Query: 98  QVDV-PLIQAL---NKRGFEIAVE-----TNGT 121
           + ++  LI++L      G   A+E     TNG+
Sbjct: 93  RKNIMSLIRSLGRHLDSG---ALEELTLTTNGS 122


>gi|242278039|ref|YP_002990168.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242120933|gb|ACS78629.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 356

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 15/98 (15%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDV-PL 103
           +CRFC  DF+        +Y   ++    +          +  + +G GEP +  +   +
Sbjct: 44  RCRFCGYDFMNYV----PKYLDLEIYR--QRIPGIAATGVKSIMFSGEGEPFMNCNFAEI 97

Query: 104 IQALNKRGFEIAVETNGTIEPPQG-------IDWICVS 134
             A    G ++ + TNGT+  P+        I WI VS
Sbjct: 98  CTATLDAGIDVGITTNGTLMNPEKLRPILDRISWIKVS 135


>gi|78223302|ref|YP_385049.1| GTP cyclohydrolase subunit MoaA [Geobacter metallireducens GS-15]
 gi|78194557|gb|ABB32324.1| GTP cyclohydrolase subunit MoaA [Geobacter metallireducens GS-15]
          Length = 326

 Score = 35.8 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 8/92 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           N       DR + +C +C     GI+        + +QL  + E     G ++ R   +T
Sbjct: 12  NYLRLSVTDRCNLRCTYC-MPASGIKKRAHSDILSYEQLHRIAEAAVAIGVEKIR---IT 67

Query: 92  GGEPLLQVDVP-LIQALNKRG--FEIAVETNG 120
           GGEPL++  +P  +  L +     ++ + TNG
Sbjct: 68  GGEPLVRKGMPGFLAGLKRIPGLKKLVLTTNG 99


>gi|313683432|ref|YP_004061170.1| GTP cyclohydrolase subunit moaa [Sulfuricurvum kujiense DSM 16994]
 gi|313156292|gb|ADR34970.1| GTP cyclohydrolase subunit MoaA [Sulfuricurvum kujiense DSM 16994]
          Length = 321

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 20/168 (11%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           +R + +C++C  +  F  +        + ++L + I+     G K+ R   +TGGEPLL+
Sbjct: 19  ERCNFRCQYCMPEKPFSWVPKEN--LLSFEELFEFIKVSIDEGIKKIR---ITGGEPLLR 73

Query: 99  VDVP-LIQALNK--RGFEIAVETN-----GTIEP--PQGIDWICVSPKAGCDLKIKGGQE 148
            D+   I+ +       ++A+ TN     G+ +     G+  + VS       +I     
Sbjct: 74  EDLDTFIKMIYDYKNDIDLAMTTNAFLLKGSAKKLYDAGLRRLNVS-IDSLKPEIAEAIA 132

Query: 149 LKLVFPQVNVSPENYIGFDFE-RFSLQPMDGPFLEENTNLAISYCFQN 195
            K V P V    E  +   F+ + ++ PM G    E  +  + YC   
Sbjct: 133 KKDVLPNVLAGIEEALRVGFKVKVNMVPMKGMNEGEVLD-VLEYCKDR 179


>gi|293395384|ref|ZP_06639668.1| pyruvate formate-lyase activating enzyme [Serratia odorifera DSM
           4582]
 gi|291422068|gb|EFE95313.1| pyruvate formate-lyase activating enzyme [Serratia odorifera DSM
           4582]
          Length = 299

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118
           G   + D++   +       ++ G    L+GGEP +  D+   L++A  +     AVET
Sbjct: 101 GEMKSADEIMATVLRDKPFYDRSGGGMTLSGGEPFMTPDLTLRLLKASRQHAIHTAVET 159


>gi|281600107|gb|ADA73091.1| Molybdenum cofactor biosynthesis protein A [Shigella flexneri
           2002017]
          Length = 340

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 33  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 88

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 89  RDFTDIIAAVRENDAIRQIAVTTNG 113


>gi|162448533|ref|YP_001610900.1| molybdenum cofactor biosynthesis protein A [Sorangium cellulosum
           'So ce 56']
 gi|161159115|emb|CAN90420.1| probable molybdenum cofactor biosynthesis protein A [Sorangium
           cellulosum 'So ce 56']
          Length = 329

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 17/103 (16%)

Query: 45  AQCRFCDTDFVGIQGTKGGRYNVDQLA--------DLIEEQWITGEKEGRYCVLTGGEPL 96
           A+C FC         ++G   +V +          D +               +TGGEP 
Sbjct: 28  AKCHFC--VEELRPASRGRSLSVQKTVEDDDGRYFDAMAASLEALRPLDPTISVTGGEPS 85

Query: 97  LQVDVPLIQALNKR--GFEIAVETNGT-----IEPPQGIDWIC 132
               +P I AL +   G +  + TNG+      E  + IDWI 
Sbjct: 86  HDPRLPRILALGQAHQGRKRTLTTNGSGLLQQREGKRVIDWIV 128


>gi|157415937|ref|YP_001483193.1| hypothetical protein C8J_1619 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386901|gb|ABV53216.1| hypothetical protein C8J_1619 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307748574|gb|ADN91844.1| radical SAM domain-containing protein [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931318|gb|EFV10287.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 342

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 47/126 (37%), Gaps = 31/126 (24%)

Query: 92  GGEPLLQVDVP-LIQAL--NKRGFEIAVETNGTIEP----------PQGIDWICVSP-KA 137
           GGEPLL  D+P LI  L   K+    ++ TNGTI+            + +  I +S  K 
Sbjct: 126 GGEPLLFKDLPKLIDYLNCQKKILTFSLVTNGTIDFKDELINKLKHSKKVRKITISNYKN 185

Query: 138 GCDLKIKGGQELKLVFPQVNVSP-------ENYIGFDFERFSLQPMDGPFLEENTNLAIS 190
             +LKI   QE  +     N  P       EN   FD E+             N    I 
Sbjct: 186 SPNLKIPLKQEDIIKKLIKNKIPYSLDSNKENSTWFDPEKIY-------KRGRNKEEIIK 238

Query: 191 ---YCF 193
              YC 
Sbjct: 239 NYYYCK 244


>gi|158522869|ref|YP_001530739.1| molybdenum cofactor biosynthesis protein A [Desulfococcus
           oleovorans Hxd3]
 gi|158511695|gb|ABW68662.1| molybdenum cofactor biosynthesis protein A [Desulfococcus
           oleovorans Hxd3]
          Length = 330

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR +  C +C+      +         ++L  +IE     G  + R   +TGGEPL++ D
Sbjct: 23  DRCNLNCIYCNPSRYAKKLAHSDILTYEELLSIIEAGAGLGITKVR---ITGGEPLVRKD 79


>gi|328943967|ref|ZP_08241432.1| pyruvate formate-lyase activating enzyme [Atopobium vaginae DSM
           15829]
 gi|327491936|gb|EGF23710.1| pyruvate formate-lyase activating enzyme [Atopobium vaginae DSM
           15829]
          Length = 325

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 26/110 (23%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           A+F  F+GC L           +C FC  +F   Q   G +    +LA+++ E    G  
Sbjct: 59  AIF--FTGCPL-----------RCAFC-QNFKISQEGFGLKITTARLAEIMLELQAQGAL 104

Query: 84  EGRYCVLTGGEPLL---QVDVPLIQALNKRGFEIAV--ETNGTIEPPQGI 128
                      PL     V   L  A    G ++ +   T+G  E P+ I
Sbjct: 105 NINLVT-----PLHYAPHVREALFMA-KDAGLQLPIVCNTSG-YERPETI 147


>gi|283788523|ref|YP_003368388.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Citrobacter rodentium ICC168]
 gi|282951977|emb|CBG91704.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Citrobacter rodentium ICC168]
          Length = 378

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L+DL  +      +E +   + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLAADVSFAQGREVKTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L              EI +E N GT+E  + +D+
Sbjct: 66  GGTPSL-LSGPAMQTLLDGVRARLTLAADAEITMEANPGTVEADRFVDY 113


>gi|225025138|ref|ZP_03714330.1| hypothetical protein EIKCOROL_02030 [Eikenella corrodens ATCC
           23834]
 gi|224942099|gb|EEG23308.1| hypothetical protein EIKCOROL_02030 [Eikenella corrodens ATCC
           23834]
          Length = 328

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           D  + +C +C        G +G G+ +   L ++     +      R   LTGGEP L+ 
Sbjct: 24  DLCNYRCTYC-----LPDGYQGKGKPDELTLPEIETLVNVFAAAGTRKIRLTGGEPTLRR 78

Query: 100 DVPLIQALNKRG 111
           D+  I A+ K  
Sbjct: 79  DLADIIAMCKAN 90


>gi|188533171|ref|YP_001906968.1| hypothetical protein ETA_10250 [Erwinia tasmaniensis Et1/99]
 gi|254807181|sp|B2VE98|RLMN_ERWT9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|188028213|emb|CAO96071.1| Conserved hypothetical protein YfgB [Erwinia tasmaniensis Et1/99]
          Length = 389

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A +I    + G++     V+ G
Sbjct: 123 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGATKVIGQRPITNVVMMG 182

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 183 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 233


>gi|198243140|ref|YP_002217079.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197937656|gb|ACH74989.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
          Length = 378

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L DL  +      +E +   + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLDADVAWAQGREVKTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L              EI +E N GT+E  + ID+
Sbjct: 66  GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113


>gi|82776149|ref|YP_402496.1| molybdenum cofactor biosynthesis protein A [Shigella dysenteriae
           Sd197]
 gi|157160256|ref|YP_001457574.1| molybdenum cofactor biosynthesis protein A [Escherichia coli HS]
 gi|309786571|ref|ZP_07681194.1| molybdenum cofactor biosynthesis protein A [Shigella dysenteriae
           1617]
 gi|123755782|sp|Q32I50|MOAA_SHIDS RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|167011813|sp|A7ZY37|MOAA_ECOHS RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|81240297|gb|ABB61007.1| molybdopterin biosynthesis, protein A [Shigella dysenteriae Sd197]
 gi|157065936|gb|ABV05191.1| molybdenum cofactor biosynthesis protein A [Escherichia coli HS]
 gi|308925634|gb|EFP71118.1| molybdenum cofactor biosynthesis protein A [Shigella dysenteriae
           1617]
          Length = 329

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 78  RDFTDIIAAVRENDAIRQIAVTTNG 102


>gi|326383516|ref|ZP_08205202.1| alpha/beta hydrolase fold-3 domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326197600|gb|EGD54788.1| alpha/beta hydrolase fold-3 domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 359

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 49  FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
           FCDT           R +     DL             + V+ G +PL    +    AL 
Sbjct: 256 FCDTYLESRDQLSDPRVSPLLADDL-------SGLAPAHVVVAGFDPLRDEGLEYADALE 308

Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139
           K G  + VE  G++     I+   +SP+A  
Sbjct: 309 KAGVPVTVERAGSM-IHGFINMALLSPEAHA 338


>gi|325124369|gb|ADY83892.1| putative oxidase [Acinetobacter calcoaceticus PHEA-2]
          Length = 384

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 14/105 (13%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIE----EQWITGEKEGRY 87
            L           +C +CD +      G          L  L+     +  +   +    
Sbjct: 10  PLSLYIHMPWCVRKCPYCDFNSHAVPDGALSAELEQTYLKALVADFETQVEMAQGRSIHS 69

Query: 88  CVLTGGEPLL-------QVDVPLIQALN-KRGFEIAVETN-GTIE 123
             + GG P L        +   L   L  + G EI +E N GT+E
Sbjct: 70  VFIGGGTPSLISAKGYAWLFEQLKSLLKFEDGCEITLEANPGTLE 114


>gi|300992093|ref|ZP_07179795.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           200-1]
 gi|300305422|gb|EFJ59942.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           200-1]
 gi|324011124|gb|EGB80343.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           60-1]
          Length = 352

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 45  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 100

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 101 RDFTDIIAAVRENDAIRQIAVTTNG 125


>gi|296386884|ref|ZP_06876383.1| coproporphyrinogen III oxidase [Pseudomonas aeruginosa PAb1]
          Length = 384

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 35/108 (32%), Gaps = 10/108 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +             VD  LADL ++      +        
Sbjct: 11  PLALYVHIPWCVRKCPYCDFNSHAAGPELPEEAYVDALLADLEQDLHHVHGRRLGSIFFG 70

Query: 92  GGEPLLQVDVPLIQALN--------KRGFEIAVETN-GTIEPPQGIDW 130
           GG P L     L + L           G EI +E N GT E  +  D+
Sbjct: 71  GGTPSLFSAKALGRLLEGVERRVGFADGIEITLEANPGTFEQVKFADY 118


>gi|294650282|ref|ZP_06727650.1| molybdopterin biosynthesis protein A [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292823812|gb|EFF82647.1| molybdopterin biosynthesis protein A [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 343

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 20/124 (16%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QV 99
           DR + +C +C    +        + ++     L+       ++      +TGGEPL+ Q 
Sbjct: 31  DRCNFKCVYC----MPEHPEWMKKQDLLSFESLLVFCTYMVKQGIENIRITGGEPLMRQG 86

Query: 100 DVPLI---QALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155
            V  I   Q L K G   I++ TNG               K    LK  G  +L +    
Sbjct: 87  VVHFIRDLQKLKKIGLKRISMTTNGHYLA-----------KYADQLKAAGLDDLNISLDS 135

Query: 156 VNVS 159
           ++  
Sbjct: 136 IDAK 139


>gi|291549618|emb|CBL25880.1| Predicted Fe-S oxidoreductases [Ruminococcus torques L2-14]
          Length = 452

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 22/100 (22%)

Query: 32  CNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGR 86
           CN+      D  SA    C  C           G + ++  D + ++I++    G     
Sbjct: 107 CNVPWAILLDPTSACNLHCTGC------WAAEYGHKLSLSLDTIDNIIQQGKELGTYMY- 159

Query: 87  YCVLTGGEPLLQVDVPLIQALNKRGFEIAVE----TNGTI 122
             + TGGEP+++    +   L +R  +   E    TNGT+
Sbjct: 160 --IYTGGEPMVRKKDLIT--LCERHPDC--EFLSFTNGTL 193


>gi|300024258|ref|YP_003756869.1| molybdenum cofactor biosynthesis protein A [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526079|gb|ADJ24548.1| molybdenum cofactor biosynthesis protein A [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 349

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C ++ +     K    ++++L  L       G K+ R   +TGGEPL++ +
Sbjct: 38  DRCDFRCVYCMSEHMTFL-PKRDLLSLEELDVLCSAFVRRGVKKLR---ITGGEPLVRKN 93

Query: 101 VP-LIQAL---NKRG--FEIAVETNGT 121
           +  L +AL    + G   E+ + TNG+
Sbjct: 94  IMWLFEALGRHLESGDLKELTLTTNGS 120


>gi|255073297|ref|XP_002500323.1| predicted protein [Micromonas sp. RCC299]
 gi|226515585|gb|ACO61581.1| predicted protein [Micromonas sp. RCC299]
          Length = 272

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 43/126 (34%), Gaps = 26/126 (20%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GC           S +C FC   D+         G    V Q+   IE         G 
Sbjct: 47  AGC-----------SKRCVFCCNPDS----WSPAGGTLMTVAQVFRQIETSIPYYLSSGG 91

Query: 87  YCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGT------IEPPQGIDWICVSPKAG 138
              L+GGE LLQ      L     +RG   A++T  T       +    +D + +  K+ 
Sbjct: 92  GITLSGGECLLQPRFSKQLCVEARRRGLTAALDTAATGTERDWDQILPHVDLVLLCVKSS 151

Query: 139 CDLKIK 144
              K +
Sbjct: 152 DPRKHQ 157


>gi|167990369|ref|ZP_02571469.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205331198|gb|EDZ17962.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261248235|emb|CBG26072.1| possible oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|267995269|gb|ACY90154.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159659|emb|CBW19178.1| possible oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|323131460|gb|ADX18890.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
          Length = 378

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L DL  +      +E +   + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLDADVAWAQGREVKTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L              EI +E N GT+E  + ID+
Sbjct: 66  GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113


>gi|167552004|ref|ZP_02345757.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205323333|gb|EDZ11172.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 378

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L DL  +      +E +   + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLDADVAWAQGREVKTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L              EI +E N GT+E  + ID+
Sbjct: 66  GGTPSL-LSGPAMQTLLDGVRTRLNLAADAEITMEANPGTVEADRFIDY 113


>gi|149923343|ref|ZP_01911751.1| molybdenum cofactor biosynthesis protein A [Plesiocystis pacifica
           SIR-1]
 gi|149815823|gb|EDM75345.1| molybdenum cofactor biosynthesis protein A [Plesiocystis pacifica
           SIR-1]
          Length = 369

 Score = 35.8 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 13/90 (14%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99
           DR S +C +C          +    +++++A + E     G +  R   LTGGEP L+  
Sbjct: 49  DRCSMRCTYCMPPEGIEHVARSEVLSLEEVALVAEAFARWGVERVR---LTGGEPTLRRG 105

Query: 100 DVPLIQALN-----KRG----FEIAVETNG 120
              L++ L       +G     E+A+ TNG
Sbjct: 106 LAALVERLAQTPVGAQGEGATLEVAMTTNG 135


>gi|326915316|ref|XP_003203965.1| PREDICTED: LOW QUALITY PROTEIN: molybdenum cofactor biosynthesis
           protein 1-like, partial [Meleagris gallopavo]
          Length = 651

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       ++ + +C++C     G+Q T        Q  ++I    +  ++      LTG
Sbjct: 31  NYLRISLTEKCNLRCQYC-MPEEGVQLTPKSELLTAQ--EIITLAGLFVKEGVEKIRLTG 87

Query: 93  GEPLLQVD-VPLIQAL-NKRGFE-IAVETNG 120
           GEPL++ D V ++  L    G + IAV TNG
Sbjct: 88  GEPLIRPDVVDIVGQLYKLEGLKTIAVTTNG 118


>gi|310828985|ref|YP_003961342.1| Predicted Fe-S oxidoreductase [Eubacterium limosum KIST612]
 gi|308740719|gb|ADO38379.1| Predicted Fe-S oxidoreductase [Eubacterium limosum KIST612]
          Length = 454

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 22/100 (22%)

Query: 32  CNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRYNVD--QLADLIEEQWITGEKEGR 86
           CN+      D  SA    C  C           G + ++D   +  ++ E    G     
Sbjct: 107 CNVPWAILLDPTSACNLHCTGC------WAAEYGHKQSLDLETIDRIVREGKALGTYMY- 159

Query: 87  YCVLTGGEPLLQVDVPLIQALNKRGFEIAVE----TNGTI 122
             + TGGEPL++    +   L +R  +   E    TNGT+
Sbjct: 160 --IYTGGEPLVRKKDLIT--LCERHPDC--EFLSFTNGTL 193


>gi|331656798|ref|ZP_08357760.1| molybdenum cofactor biosynthesis protein A [Escherichia coli TA206]
 gi|331055046|gb|EGI27055.1| molybdenum cofactor biosynthesis protein A [Escherichia coli TA206]
          Length = 329

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 78  RDFTDIIAAVRENDAIRQIAVTTNG 102


>gi|298384683|ref|ZP_06994243.1| radical SAM domain-containing protein [Bacteroides sp. 1_1_14]
 gi|298262962|gb|EFI05826.1| radical SAM domain-containing protein [Bacteroides sp. 1_1_14]
          Length = 370

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 67/178 (37%), Gaps = 23/178 (12%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTK-----GGRYNVDQLADLIEEQWITGEKEGRYCVL 90
                   + +C +C   +V  +G +       RY+  Q+A+ +  + + G      C +
Sbjct: 10  CLIPITVCNMKCHYC---YVVQRGYRTMKMAEMRYSPKQIAEGLSHKRLNGAAYISICGI 66

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGT----------IEPPQGIDWICVSPKAGC 139
             GE  +  ++P +   L K G  I + TNGT          + P + +  +  S     
Sbjct: 67  --GETTMVKELPEICLELLKEGHYINITTNGTFIRFFDQFLELIPSEMLARVNFSFSFHY 124

Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197
            L+++  +  +  F  +N   +       + F+L     P LE+   + +      P+
Sbjct: 125 -LELERMKAFEKFFANINRVKDAGCSILVQ-FNLCDEYEPHLEDIKRMCLENVGALPQ 180


>gi|294497200|ref|YP_003560900.1| hypothetical protein BMQ_0384 [Bacillus megaterium QM B1551]
 gi|294347137|gb|ADE67466.1| conserved hypothetical protein [Bacillus megaterium QM B1551]
          Length = 372

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        +D +   ++E         R   +TGGEP++ +      
Sbjct: 42  RCEHCAVGYT-LQPKDPNALPLDLILKRLDEI-----PTLRALSITGGEPMMSLSSVKNY 95

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
            VPL++  ++RG    + +N T++ 
Sbjct: 96  VVPLLKYAHERGVRTQINSNLTLDL 120


>gi|293409159|ref|ZP_06652735.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B354]
 gi|291469627|gb|EFF12111.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B354]
          Length = 329

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 78  RDFTDIIAAVRENDAIRQIAVTTNG 102


>gi|256023623|ref|ZP_05437488.1| molybdenum cofactor biosynthesis protein A [Escherichia sp.
           4_1_40B]
 gi|307137405|ref|ZP_07496761.1| molybdenum cofactor biosynthesis protein A [Escherichia coli H736]
 gi|309701057|emb|CBJ00355.1| molybdenum cofactor biosynthesis protein A [Escherichia coli ETEC
           H10407]
 gi|315619780|gb|EFV00299.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 3431]
 gi|323938136|gb|EGB34396.1| molybdenum coprotein biosynthesis protein A [Escherichia coli
           E1520]
 gi|323942654|gb|EGB38819.1| molybdenum coproteinbiosynthesis protein A [Escherichia coli E482]
 gi|323971946|gb|EGB67167.1| molybdenum coproteinbiosynthesis protein A [Escherichia coli TA007]
          Length = 329

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 78  RDFTDIIAAVRENDAIRQIAVTTNG 102


>gi|218704159|ref|YP_002411678.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           UMN026]
 gi|293404082|ref|ZP_06648076.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           FVEC1412]
 gi|298379863|ref|ZP_06989468.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           FVEC1302]
 gi|331662136|ref|ZP_08363059.1| molybdenum cofactor biosynthesis protein A [Escherichia coli TA143]
 gi|226704853|sp|B7NA81|MOAA_ECOLU RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|218431256|emb|CAR12133.1| molybdopterin biosynthesis protein A [Escherichia coli UMN026]
 gi|291428668|gb|EFF01693.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           FVEC1412]
 gi|298279561|gb|EFI21069.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           FVEC1302]
 gi|331060558|gb|EGI32522.1| molybdenum cofactor biosynthesis protein A [Escherichia coli TA143]
          Length = 329

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 78  RDFTDIIAAVRENDAIRQIAVTTNG 102


>gi|218549655|ref|YP_002383446.1| molybdenum cofactor biosynthesis protein A [Escherichia fergusonii
           ATCC 35469]
 gi|226704850|sp|B7LJY1|MOAA_ESCF3 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|218357196|emb|CAQ89831.1| molybdopterin biosynthesis protein A [Escherichia fergusonii ATCC
           35469]
 gi|325498048|gb|EGC95907.1| molybdenum cofactor biosynthesis protein A [Escherichia fergusonii
           ECD227]
          Length = 329

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 78  RDFTDIIAAVRENDAIRQIAVTTNG 102


>gi|110640985|ref|YP_668713.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 536]
 gi|110342577|gb|ABG68814.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 536]
          Length = 340

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 33  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 88

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 89  RDFTDIIAAVRENDAIRQIAVTTNG 113


>gi|74311325|ref|YP_309744.1| molybdenum cofactor biosynthesis protein A [Shigella sonnei Ss046]
 gi|331667144|ref|ZP_08368009.1| molybdenum cofactor biosynthesis protein A [Escherichia coli TA271]
 gi|123759643|sp|Q3Z403|MOAA_SHISS RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|73854802|gb|AAZ87509.1| molybdopterin biosynthesis, protein A [Shigella sonnei Ss046]
 gi|323165698|gb|EFZ51484.1| molybdenum cofactor biosynthesis protein A [Shigella sonnei 53G]
 gi|331065500|gb|EGI37393.1| molybdenum cofactor biosynthesis protein A [Escherichia coli TA271]
          Length = 329

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 78  RDFTDIIAAVRENDAIRQIAVTTNG 102


>gi|187733362|ref|YP_001881033.1| molybdenum cofactor biosynthesis protein A [Shigella boydii CDC
           3083-94]
 gi|226707387|sp|B2TVE9|MOAA_SHIB3 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|187430354|gb|ACD09628.1| molybdenum cofactor biosynthesis protein A [Shigella boydii CDC
           3083-94]
          Length = 329

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 78  RDFTDIIAAVRENDAIRQIAVTTNG 102


>gi|15800532|ref|NP_286544.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 EDL933]
 gi|15830113|ref|NP_308886.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. Sakai]
 gi|82543228|ref|YP_407175.1| molybdenum cofactor biosynthesis protein A [Shigella boydii Sb227]
 gi|157155416|ref|YP_001461969.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           E24377A]
 gi|168751999|ref|ZP_02777021.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC4113]
 gi|168757124|ref|ZP_02782131.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC4401]
 gi|168764316|ref|ZP_02789323.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC4501]
 gi|168767281|ref|ZP_02792288.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC4486]
 gi|168777240|ref|ZP_02802247.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC4196]
 gi|168779324|ref|ZP_02804331.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC4076]
 gi|168786994|ref|ZP_02812001.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC869]
 gi|168799946|ref|ZP_02824953.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC508]
 gi|170682341|ref|YP_001742884.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           SMS-3-5]
 gi|191169283|ref|ZP_03031033.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B7A]
 gi|193064470|ref|ZP_03045551.1| molybdenum cofactor biosynthesis protein A [Escherichia coli E22]
 gi|193069390|ref|ZP_03050345.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           E110019]
 gi|194428160|ref|ZP_03060703.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B171]
 gi|194433163|ref|ZP_03065445.1| molybdenum cofactor biosynthesis protein A [Shigella dysenteriae
           1012]
 gi|194438411|ref|ZP_03070501.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 101-1]
 gi|195936821|ref|ZP_03082203.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807108|ref|ZP_03249445.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC4206]
 gi|208815182|ref|ZP_03256361.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC4045]
 gi|208822050|ref|ZP_03262369.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398143|ref|YP_002269450.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC4115]
 gi|209918026|ref|YP_002292110.1| molybdenum cofactor biosynthesis protein A [Escherichia coli SE11]
 gi|217324411|ref|ZP_03440495.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. TW14588]
 gi|218553364|ref|YP_002386277.1| molybdenum cofactor biosynthesis protein A [Escherichia coli IAI1]
 gi|218688567|ref|YP_002396779.1| molybdenum cofactor biosynthesis protein A [Escherichia coli ED1a]
 gi|218694254|ref|YP_002401921.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 55989]
 gi|253774216|ref|YP_003037047.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160858|ref|YP_003043966.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B str.
           REL606]
 gi|254791975|ref|YP_003076812.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. TW14359]
 gi|256021149|ref|ZP_05435014.1| molybdenum cofactor biosynthesis protein A [Shigella sp. D9]
 gi|260843023|ref|YP_003220801.1| molybdopterin biosynthesis protein A [Escherichia coli O103:H2 str.
           12009]
 gi|260854072|ref|YP_003227963.1| molybdopterin biosynthesis protein A [Escherichia coli O26:H11 str.
           11368]
 gi|260866948|ref|YP_003233350.1| molybdopterin biosynthesis protein A [Escherichia coli O111:H- str.
           11128]
 gi|261225428|ref|ZP_05939709.1| molybdopterin biosynthesis protein A [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258603|ref|ZP_05951136.1| molybdopterin biosynthesis protein A [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291281778|ref|YP_003498596.1| Molybdenum cofactor biosynthesis protein A [Escherichia coli O55:H7
           str. CB9615]
 gi|293414061|ref|ZP_06656710.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B185]
 gi|293433042|ref|ZP_06661470.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B088]
 gi|306812817|ref|ZP_07447010.1| molybdenum cofactor biosynthesis protein A [Escherichia coli NC101]
 gi|307313809|ref|ZP_07593426.1| molybdenum cofactor biosynthesis protein A [Escherichia coli W]
 gi|54037808|sp|P65383|MOAA_ECO57 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|54041468|sp|P65382|MOAA_ECOL6 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|123755636|sp|Q324B1|MOAA_SHIBS RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|167011812|sp|A7ZJJ0|MOAA_ECO24 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|226704817|sp|B5YRM0|MOAA_ECO5E RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|226704851|sp|B1LM72|MOAA_ECOSM RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|226704852|sp|B6I7T6|MOAA_ECOSE RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|226704855|sp|B7M753|MOAA_ECO8A RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|254811543|sp|B7LC63|MOAA_ECO55 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|254811544|sp|B7MQN5|MOAA_ECO81 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|12513770|gb|AAG55152.1|AE005259_3 molybdopterin biosynthesis, protein A [Escherichia coli O157:H7
           str. EDL933]
 gi|13360318|dbj|BAB34282.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. Sakai]
 gi|81244639|gb|ABB65347.1| molybdopterin biosynthesis, protein A [Shigella boydii Sb227]
 gi|157077446|gb|ABV17154.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           E24377A]
 gi|170520059|gb|ACB18237.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           SMS-3-5]
 gi|187767501|gb|EDU31345.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014053|gb|EDU52175.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC4113]
 gi|189002733|gb|EDU71719.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC4076]
 gi|189355857|gb|EDU74276.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC4401]
 gi|189363390|gb|EDU81809.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC4486]
 gi|189365661|gb|EDU84077.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC4501]
 gi|189373150|gb|EDU91566.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC869]
 gi|189377745|gb|EDU96161.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC508]
 gi|190900672|gb|EDV60471.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B7A]
 gi|192928932|gb|EDV82545.1| molybdenum cofactor biosynthesis protein A [Escherichia coli E22]
 gi|192957343|gb|EDV87791.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           E110019]
 gi|194413720|gb|EDX29999.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B171]
 gi|194418660|gb|EDX34747.1| molybdenum cofactor biosynthesis protein A [Shigella dysenteriae
           1012]
 gi|194422635|gb|EDX38632.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 101-1]
 gi|208726909|gb|EDZ76510.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC4206]
 gi|208731830|gb|EDZ80518.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC4045]
 gi|208737535|gb|EDZ85218.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC4042]
 gi|209159543|gb|ACI36976.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. EC4115]
 gi|209776068|gb|ACI86346.1| molybdenum cofactor biosynthesis protein A [Escherichia coli]
 gi|209776070|gb|ACI86347.1| molybdenum cofactor biosynthesis protein A [Escherichia coli]
 gi|209776072|gb|ACI86348.1| molybdenum cofactor biosynthesis protein A [Escherichia coli]
 gi|209776074|gb|ACI86349.1| molybdenum cofactor biosynthesis protein A [Escherichia coli]
 gi|209776076|gb|ACI86350.1| molybdenum cofactor biosynthesis protein A [Escherichia coli]
 gi|209911285|dbj|BAG76359.1| molybdopterin biosynthesis protein A [Escherichia coli SE11]
 gi|217320632|gb|EEC29056.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. TW14588]
 gi|218350986|emb|CAU96690.1| molybdopterin biosynthesis protein A [Escherichia coli 55989]
 gi|218360132|emb|CAQ97681.1| molybdopterin biosynthesis protein A [Escherichia coli IAI1]
 gi|218426131|emb|CAR06951.1| molybdopterin biosynthesis protein A [Escherichia coli ED1a]
 gi|222032512|emb|CAP75251.1| Molybdenum cofactor biosynthesis protein A [Escherichia coli LF82]
 gi|242376573|emb|CAQ31282.1| molybdopterin biosynthesis protein A [Escherichia coli BL21(DE3)]
 gi|253325260|gb|ACT29862.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972759|gb|ACT38430.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B str.
           REL606]
 gi|253976979|gb|ACT42649.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           BL21(DE3)]
 gi|254591375|gb|ACT70736.1| molybdopterin biosynthesis protein A [Escherichia coli O157:H7 str.
           TW14359]
 gi|257752721|dbj|BAI24223.1| molybdopterin biosynthesis protein A [Escherichia coli O26:H11 str.
           11368]
 gi|257758170|dbj|BAI29667.1| molybdopterin biosynthesis protein A [Escherichia coli O103:H2 str.
           12009]
 gi|257763304|dbj|BAI34799.1| molybdopterin biosynthesis protein A [Escherichia coli O111:H- str.
           11128]
 gi|284920630|emb|CBG33692.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 042]
 gi|290761651|gb|ADD55612.1| Molybdenum cofactor biosynthesis protein A [Escherichia coli O55:H7
           str. CB9615]
 gi|291323861|gb|EFE63283.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B088]
 gi|291434119|gb|EFF07092.1| molybdenum cofactor biosynthesis protein A [Escherichia coli B185]
 gi|305853580|gb|EFM54019.1| molybdenum cofactor biosynthesis protein A [Escherichia coli NC101]
 gi|306906449|gb|EFN36963.1| molybdenum cofactor biosynthesis protein A [Escherichia coli W]
 gi|312945299|gb|ADR26126.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315060017|gb|ADT74344.1| molybdopterin biosynthesis protein A [Escherichia coli W]
 gi|320175202|gb|EFW50311.1| Molybdenum cofactor biosynthesis protein MoaA [Shigella dysenteriae
           CDC 74-1112]
 gi|320178492|gb|EFW53457.1| Molybdenum cofactor biosynthesis protein MoaA [Shigella boydii ATCC
           9905]
 gi|320183270|gb|EFW58125.1| Molybdenum cofactor biosynthesis protein MoaA [Shigella flexneri
           CDC 796-83]
 gi|320192744|gb|EFW67385.1| Molybdenum cofactor biosynthesis protein MoaA [Escherichia coli
           O157:H7 str. EC1212]
 gi|320196724|gb|EFW71347.1| Molybdenum cofactor biosynthesis protein MoaA [Escherichia coli
           WV_060327]
 gi|320198970|gb|EFW73567.1| Molybdenum cofactor biosynthesis protein MoaA [Escherichia coli
           EC4100B]
 gi|320637643|gb|EFX07435.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. G5101]
 gi|320642769|gb|EFX11970.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H- str. 493-89]
 gi|320648225|gb|EFX16880.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H- str. H 2687]
 gi|320654062|gb|EFX22130.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320659685|gb|EFX27241.1| molybdenum cofactor biosynthesis protein A [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320664155|gb|EFX31306.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323155698|gb|EFZ41869.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           EPECa14]
 gi|323159710|gb|EFZ45688.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           E128010]
 gi|323172103|gb|EFZ57742.1| molybdenum cofactor biosynthesis protein A [Escherichia coli LT-68]
 gi|323175601|gb|EFZ61196.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 1180]
 gi|323185064|gb|EFZ70430.1| molybdenum cofactor biosynthesis protein A [Escherichia coli 1357]
 gi|323190907|gb|EFZ76174.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           RN587/1]
 gi|323379424|gb|ADX51692.1| molybdenum cofactor biosynthesis protein A [Escherichia coli KO11]
 gi|326338333|gb|EGD62162.1| Molybdenum cofactor biosynthesis protein MoaA [Escherichia coli
           O157:H7 str. 1125]
 gi|326346311|gb|EGD70049.1| Molybdenum cofactor biosynthesis protein MoaA [Escherichia coli
           O157:H7 str. 1044]
 gi|327253565|gb|EGE65194.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           STEC_7v]
 gi|330910526|gb|EGH39036.1| molybdenum cofactor biosynthesis protein MoaA [Escherichia coli
           AA86]
 gi|332089009|gb|EGI94121.1| molybdenum cofactor biosynthesis protein A [Shigella boydii
           5216-82]
 gi|332091130|gb|EGI96220.1| molybdenum cofactor biosynthesis protein A [Shigella dysenteriae
           155-74]
 gi|332097535|gb|EGJ02515.1| molybdenum cofactor biosynthesis protein A [Shigella boydii
           3594-74]
          Length = 329

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 78  RDFTDIIAAVRENDAIRQIAVTTNG 102


>gi|257066587|ref|YP_003152843.1| Radical SAM domain-containing protein [Anaerococcus prevotii DSM
           20548]
 gi|256798467|gb|ACV29122.1| Radical SAM domain protein [Anaerococcus prevotii DSM 20548]
          Length = 446

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 10/101 (9%)

Query: 32  CNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           CN+      D  +A   +C  C   +    G K    + D++ D+I +    G       
Sbjct: 104 CNVPWTILLDPTTACNLKCTGC---WAAEYG-KSLNLSYDEIDDIIRQGKDMGIYFY--- 156

Query: 89  VLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGID 129
           + TGGEPL++    L  A      E  + TN T+     +D
Sbjct: 157 IYTGGEPLVRKKDVLKIAEKHNDCEFLIFTNSTLIDDDFVD 197


>gi|190892073|ref|YP_001978615.1| molybdenum cofactor biosynthesis protein [Rhizobium etli CIAT 652]
 gi|226707376|sp|B3PQ08|MOAA_RHIE6 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|190697352|gb|ACE91437.1| molybdenum cofactor biosynthesis protein [Rhizobium etli CIAT 652]
          Length = 348

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          K     +++L  L       G ++ R   LTGGEPL++ +
Sbjct: 38  DRCDFRCTYC-MAENMTFLPKKDLLTLEELDRLCSAFIAKGVRKIR---LTGGEPLVRKN 93

Query: 101 VP-LIQALNK---RGF-EIAVETNGT 121
           +  L++ L K    G  E+ + TNG+
Sbjct: 94  IMYLVRQLGKKIGAGLDELTLTTNGS 119


>gi|119094147|gb|ABL60977.1| molybdenum cofactor biosynthesis protein A [uncultured marine
           bacterium HF10_19P19]
          Length = 298

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 14/89 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          K     +++L  +       G +  R   LTGGEPL++ +
Sbjct: 41  DRCDFRCVYC-MAEEMTFLPKKDLLTLEELEQVCRTFMSMGTRRIR---LTGGEPLVRRN 96

Query: 101 VPLIQALNKRGFEI--------AVETNGT 121
           +  IQ +   G E+         + TNG+
Sbjct: 97  I--IQLIRNLGAEVKSGQLDELTITTNGS 123


>gi|153006920|ref|YP_001381245.1| radical SAM domain-containing protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030493|gb|ABS28261.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 336

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 75  EEQWITGEKEGRYCV-LTGGEPLLQVDVPLIQA-LNKRGFEIAVETN 119
           E+ W   ++ G   V + GGEPLL  ++  +   L +RG  + + TN
Sbjct: 62  EQCWAASDECGAPVVSIAGGEPLLHPEIARVARGLVERGRFVYLCTN 108


>gi|329732101|gb|EGG68455.1| conserved domain protein [Staphylococcus epidermidis VCU144]
          Length = 122

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 30/112 (26%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C   +V          ++D+  +LI+++    +++       
Sbjct: 11  CNL-----------RCKYC---YVNKNAKYLQLDDIDKAFELIKQKISDDDEKIINVNFH 56

Query: 92  GGEPLLQVDVPLI-------QALNKR-----GFEIAVETNGTIEPPQGIDWI 131
           GGEP L  + P+I         L ++      + I   TNGT      ID++
Sbjct: 57  GGEPTL--NFPVIYKVVNCFSVLKEKYDISLNYYIT--TNGTAISNDAIDFL 104


>gi|313226405|emb|CBY21549.1| unnamed protein product [Oikopleura dioica]
          Length = 347

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 18/94 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR+C     G++ T   +    Q         +      +   LT
Sbjct: 31  CNL-----------RCRYC-MPIEGVKLTPSDQLLSAQELYRFSSLLVKNAGVQK-IRLT 77

Query: 92  GGEPL----LQVDVPLIQALNKRG-FEIAVETNG 120
           GGEPL    +Q  +  + +L   G  +I + TNG
Sbjct: 78  GGEPLVRREIQEIISDLNSLRDDGVKQIGITTNG 111


>gi|242278715|ref|YP_002990844.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242121609|gb|ACS79305.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 394

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            +       R + +C  C   +   +        +  +  ++I++            + +
Sbjct: 40  PVVVWNMTRRCNLKCVHC---YAQAVDPDGKDEISTSKAKEIIDDL---AAFGAPVMLFS 93

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPL++ D+  L      +G    + TNGT+
Sbjct: 94  GGEPLVRKDLVELASYATGKGMRAVISTNGTL 125


>gi|213421342|ref|ZP_03354408.1| hypothetical protein Salmonentericaenterica_27889 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 317

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 181

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232


>gi|154245334|ref|YP_001416292.1| molybdenum cofactor biosynthesis protein A [Xanthobacter
           autotrophicus Py2]
 gi|154159419|gb|ABS66635.1| molybdenum cofactor biosynthesis protein A [Xanthobacter
           autotrophicus Py2]
          Length = 351

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 55/164 (33%), Gaps = 20/164 (12%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          K    ++++L  L     + G ++ R   LTGGEPL++ D
Sbjct: 40  DRCDFRCVYC-MAEHMTFLPKQDLLSLEELDRLCSAFVLRGVRKLR---LTGGEPLVRRD 95

Query: 101 VPLIQALNKRGFEI-AVE-----TNGTIEPPQGIDWICVSPK---AGCDL-------KIK 144
           V  +     R  E   +E     TNG+       D      K      D         I 
Sbjct: 96  VMTLFRSLSRHMETGQLEELTLTTNGSQLSRHAADLAACGVKRINVSIDTLDVAKFRAIT 155

Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
              EL  V   V  +    +       +L+ ++   +      A
Sbjct: 156 RWGELSKVLEGVKAASAAGLKVKINAVALKDVNEHEIASMMEWA 199


>gi|148548997|ref|YP_001269099.1| molybdenum cofactor synthesis domain-containing protein
           [Pseudomonas putida F1]
 gi|148513055|gb|ABQ79915.1| molybdenum cofactor synthesis domain protein [Pseudomonas putida
           F1]
          Length = 322

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 23/164 (14%)

Query: 46  QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVP 102
            C +C  D   +          + D LA  +         E     +TGGEPL+      
Sbjct: 24  ACTYCVPDGKRLV---AAQDELSADALARGVAYLIEAAGIERLR--ITGGEPLVSPRLDA 78

Query: 103 LIQALNKRGF-EIAVETNG---TIEPPQ----GIDWICVSPKAGCDLKIK---GGQELKL 151
            + A+ K    ++++ TNG     + PQ    GI  + VS      L  +    G +L  
Sbjct: 79  FLAAVAKLDLDDVSLTTNGQLLARKLPQLQAAGIRRLNVSLDTLDPLAFRQIARGGDLGT 138

Query: 152 VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
           V   +  +    +     + ++ PM G  L++   L + YC   
Sbjct: 139 VLDAMEQARAVGMRI---KVNMVPMRGKNLDQVLPL-LDYCLAR 178


>gi|309798880|ref|ZP_07693141.1| organic radical activating enzyme [Streptococcus infantis SK1302]
 gi|308117529|gb|EFO54944.1| organic radical activating enzyme [Streptococcus infantis SK1302]
          Length = 54

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 4  YSIKEIF-LTLQGEGGHAGRVAVFC 27
            + EIF  T QGEG   G+  +FC
Sbjct: 9  LPVLEIFGPTFQGEGRAIGQKTMFC 33


>gi|301024505|ref|ZP_07188181.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           196-1]
 gi|299880358|gb|EFI88569.1| molybdenum cofactor biosynthesis protein A [Escherichia coli MS
           196-1]
          Length = 329

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 78  RDFTDIIAAVRENDAIRQIAVTTNG 102


>gi|218557686|ref|YP_002390599.1| molybdenum cofactor biosynthesis protein A [Escherichia coli S88]
 gi|226704816|sp|B7MGN9|MOAA_ECO45 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|218364455|emb|CAR02137.1| molybdopterin biosynthesis protein A [Escherichia coli S88]
 gi|294489623|gb|ADE88379.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           IHE3034]
 gi|307627809|gb|ADN72113.1| molybdenum cofactor biosynthesis protein A [Escherichia coli UM146]
 gi|323953556|gb|EGB49422.1| molybdenum coproteinbiosynthesis protein A [Escherichia coli H252]
 gi|323958070|gb|EGB53779.1| molybdenum coproteinbiosynthesis protein A [Escherichia coli H263]
          Length = 329

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 78  RDFTDIIAAVRENDAIRQIAVTTNG 102


>gi|30062266|ref|NP_836437.1| molybdenum cofactor biosynthesis protein A [Shigella flexneri 2a
           str. 2457T]
 gi|56479727|ref|NP_706659.2| molybdenum cofactor biosynthesis protein A [Shigella flexneri 2a
           str. 301]
 gi|81724697|sp|Q83S40|MOAA_SHIFL RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|30040511|gb|AAP16243.1| molybdopterin biosynthesis protein A [Shigella flexneri 2a str.
           2457T]
 gi|56383278|gb|AAN42366.2| molybdopterin biosynthesis protein A [Shigella flexneri 2a str.
           301]
 gi|313650321|gb|EFS14733.1| molybdenum cofactor biosynthesis protein A [Shigella flexneri 2a
           str. 2457T]
          Length = 329

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 78  RDFTDIIAAVRENDAIRQIAVTTNG 102


>gi|89896265|ref|YP_519752.1| hypothetical protein DSY3519 [Desulfitobacterium hafniense Y51]
 gi|89335713|dbj|BAE85308.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 441

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 18/95 (18%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL           +C  C   F+             +         +          L
Sbjct: 106 GCNL-----------RCPVC---FMAANDFHPDPNPSLEALGEKYRYILRHTNSDTSIQL 151

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVE--TNGTI 122
           TGGEP  + D+  +I+   + GF+ A+E  TNG +
Sbjct: 152 TGGEPTTREDLADIIRLGREIGFQ-AIEVNTNGVV 185


>gi|88799468|ref|ZP_01115045.1| pyruvate formate-lyase 1 activating enzyme [Reinekea sp. MED297]
 gi|88777778|gb|EAR08976.1| pyruvate formate-lyase 1 activating enzyme [Reinekea sp. MED297]
          Length = 261

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 50/133 (37%), Gaps = 32/133 (24%)

Query: 8   EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
           E F T+ G G        VF    GC             +C++C   DT         G 
Sbjct: 26  ESFGTVDGPGTRFV----VF--LQGC-----------LFRCKYCHNRDT----WDLDGGD 64

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG- 120
            Y+V  + + I       +  G    +TGGEP+LQ      L + L + G    ++TNG 
Sbjct: 65  LYSVTDMVEKILPFARFMDASGGGVTVTGGEPVLQAPYVALLFEKLQQHGIHTCLDTNGY 124

Query: 121 ----TIEPPQGID 129
               + E  Q ID
Sbjct: 125 VGVYSDEVHQMID 137


>gi|134295023|ref|YP_001118758.1| coproporphyrinogen III oxidase [Burkholderia vietnamiensis G4]
 gi|134138180|gb|ABO53923.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Burkholderia vietnamiensis G4]
          Length = 404

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 17/106 (16%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87
            L           +C +CD         KG R+   +  D +             ++   
Sbjct: 28  PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPETEYLDALRADLEQALPLVWGRQVHT 84

Query: 88  CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124
             + GG P L     L + L             EI +E N GT E 
Sbjct: 85  VFIGGGTPSLLSAAGLDRLLSDVRALLPLDADAEITLEANPGTFEA 130


>gi|260551661|ref|ZP_05825735.1| molybdopterin biosynthesis protein [Acinetobacter sp. RUH2624]
 gi|260405404|gb|EEW98898.1| molybdopterin biosynthesis protein [Acinetobacter sp. RUH2624]
          Length = 346

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 16/106 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C    +        + ++     L +      ++      +TGGEPL++  
Sbjct: 33  DRCNFKCVYC----MPEHPEWLNKQDLLSFEALFQFCHFMVQQGIESIRITGGEPLMRQG 88

Query: 101 VPL----IQALNKRGF-EIAVETNGTIEP-------PQGIDWICVS 134
           +      +QAL   G   I++ TNG             G+D + +S
Sbjct: 89  IVHFVRDLQALKALGLKRISMTTNGHYLAKYAKQLKDAGLDDLNIS 134


>gi|86742059|ref|YP_482459.1| radical SAM family protein [Frankia sp. CcI3]
 gi|86568921|gb|ABD12730.1| Radical SAM [Frankia sp. CcI3]
          Length = 640

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 53  DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKR 110
               +Q +   R   D LA  IE          R+  L GGE +L  +    L +A    
Sbjct: 76  AHCLVQSSPHRRERFD-LATAIEILRTAARFGRRFLDLGGGEIMLHPEDTCALARAATDL 134

Query: 111 GFEIAVETNG 120
           G+ +++ TNG
Sbjct: 135 GYYVSLNTNG 144


>gi|85715396|ref|ZP_01046378.1| molybdenum cofactor biosynthesis protein A [Nitrobacter sp.
           Nb-311A]
 gi|85697817|gb|EAQ35692.1| molybdenum cofactor biosynthesis protein A [Nitrobacter sp.
           Nb-311A]
          Length = 343

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+     K     +++L  L       G ++ R   LTGGEPL+
Sbjct: 33  DRCDLRCFYCMSEDMTFL----PKADLLTLEELDRLCSAFIAKGVRKLR---LTGGEPLV 85

Query: 98  QVDV-PLIQAL---NKRG--FEIAVETNGT 121
           + +V  LI++L    + G   E+ + TNG+
Sbjct: 86  RRNVMSLIRSLSRHLESGALKELTLTTNGS 115


>gi|290511358|ref|ZP_06550727.1| oxygen-independent coproporphyrinogen III oxidase [Klebsiella sp.
           1_1_55]
 gi|289776351|gb|EFD84350.1| oxygen-independent coproporphyrinogen III oxidase [Klebsiella sp.
           1_1_55]
          Length = 378

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L DL  +      +E     + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLQADAQYAQGREIGTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L            G EI +E N GT+E  + +D+
Sbjct: 66  GGTPSL-LSGPAMQTLLDGVRACLPLAAGAEITMEANPGTVEADRFVDY 113


>gi|289662150|ref|ZP_06483731.1| coproporphyrinogen III oxidase [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 385

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 31/99 (31%), Gaps = 10/99 (10%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91
            L           +C +CD +    +G       VD L   ++           + V   
Sbjct: 8   PLSLYVHLPWCVRKCPYCDFNSHAAKGALPFEDYVDALIRDLDADLPLAWGRVVHSVFFG 67

Query: 92  GGEPLLQVDVPLIQALNKR--------GFEIAVETN-GT 121
           GG P L     + + L             EI +ETN GT
Sbjct: 68  GGTPSLFPPEAIDRFLQAAAARLRFAPNLEITLETNPGT 106


>gi|282896814|ref|ZP_06304820.1| Molybdenum cofactor biosynthesis protein A [Raphidiopsis brookii
          D9]
 gi|281198223|gb|EFA73113.1| Molybdenum cofactor biosynthesis protein A [Raphidiopsis brookii
          D9]
          Length = 328

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 9/71 (12%)

Query: 33 NLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYC 88
          N       DR + +C +C   DT+   I   K      D+L  LI++     G    R  
Sbjct: 5  NYLRISLIDRCNFRCLYCMPNDTELNHI--LKKQLLTNDELLTLIQDVFIPVGFNRFR-- 60

Query: 89 VLTGGEPLLQV 99
           LTGGEPLL+ 
Sbjct: 61 -LTGGEPLLRP 70


>gi|220907458|ref|YP_002482769.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Cyanothece sp. PCC 7425]
 gi|219864069|gb|ACL44408.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Cyanothece sp. PCC 7425]
          Length = 208

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 26/96 (27%), Gaps = 20/96 (20%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           G  AV     GC             +C  C                +  +ADL     I 
Sbjct: 35  GCRAV-IWVQGC-----------LRECPGC----FNPASWVFEENQLVAIADL--AAKIL 76

Query: 81  GEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
                     +GGEP  Q      L + L + G  +
Sbjct: 77  ANPRNTGVTFSGGEPFWQAAALAELARTLKQAGLNV 112


>gi|152971907|ref|YP_001337016.1| coproporphyrinogen III oxidase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956756|gb|ABR78786.1| coproporphyrinogen III oxidase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 378

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L DL  +      +E     + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLQADAQYAQGREIGTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L            G EI +E N GT+E  + +D+
Sbjct: 66  GGTPSL-LSGPAMQTLLDGVRACLPLAAGAEITMEANPGTVEADRFVDY 113


>gi|126465568|ref|YP_001040677.1| radical SAM domain-containing protein [Staphylothermus marinus F1]
 gi|126014391|gb|ABN69769.1| Radical SAM domain protein [Staphylothermus marinus F1]
          Length = 506

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 36/167 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C+ C   +           ++ +   ++++    G        L+
Sbjct: 147 CNL-----------RCKHC---YQRADKPLPNELSLKEKLMVVDQLDRAGVAA---IALS 189

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
           GGEP +      ++  +  RG   AV TNG         W+          K++  ++L 
Sbjct: 190 GGEPTIHPHFRRILYEIASRGMYAAVATNG---------WV-----FADIEKLREAKKLG 235

Query: 151 LVFPQVNVSPENYIGFDFERFSLQ---PMDGPFLEENTNLAISYCFQ 194
           L + +V+V   +    D+ R  +Q         LE    L I++   
Sbjct: 236 LRYVEVSVDSADPKKHDWFR-GVQGSWERAVKALENAVKLGINHAMA 281


>gi|118590289|ref|ZP_01547692.1| molybdenum cofactor biosynthesis protein A [Stappia aggregata IAM
           12614]
 gi|118437261|gb|EAV43899.1| molybdenum cofactor biosynthesis protein A [Stappia aggregata IAM
           12614]
          Length = 356

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 22/93 (23%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+     K    ++++L  L       G ++ R   LTGGEPL+
Sbjct: 45  DRCDFRCVYCMAEDMTFL----PKREVLSLEELDRLCTAFIEKGVRKLR---LTGGEPLV 97

Query: 98  QVDV-PLIQAL---NKRGFEIAVE-----TNGT 121
           + ++  LI++L      G   A+E     TNG+
Sbjct: 98  RKNIMSLIRSLGRHLDSG---ALEELTLTTNGS 127


>gi|238912645|ref|ZP_04656482.1| hypothetical protein SentesTe_16142 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 388

 Score = 35.8 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 12/105 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG++     V+ G
Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG 181

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI 128
            GEPLL +   VP ++  L+  GF      + + T+G +     +
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL 226


>gi|215485869|ref|YP_002328300.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312967825|ref|ZP_07782038.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           2362-75]
 gi|254811542|sp|B7ULX8|MOAA_ECO27 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|215263941|emb|CAS08281.1| molybdopterin biosynthesis protein A [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312287551|gb|EFR15458.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           2362-75]
          Length = 329

 Score = 35.8 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 78  RDFTDIIAAVRENDAIRQIAVTTNG 102


>gi|206578289|ref|YP_002236593.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Klebsiella pneumoniae 342]
 gi|206567347|gb|ACI09123.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Klebsiella pneumoniae 342]
          Length = 378

 Score = 35.8 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L DL  +      +E     + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLQADAQYAQGREIGTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L            G EI +E N GT+E  + +D+
Sbjct: 66  GGTPSL-LSGPAMQTLLDGVRACLPLAAGAEITMEANPGTVEADRFVDY 113


>gi|168333908|ref|ZP_02692140.1| glycerol dehydratase activating enzyme [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 310

 Score = 35.8 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 50  CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQAL 107
           C T+ +      G   N+++    I +     ++ G    ++GGEPLLQ +    + +  
Sbjct: 96  CPTEAIR---QWGKIINIEECMKEILKDKGYYQRSGGGVTISGGEPLLQSEFVASVFREC 152

Query: 108 NKRGFEIAVETN 119
              G    VET+
Sbjct: 153 QNEGIHTCVETS 164


>gi|83312091|ref|YP_422355.1| coenzyme PQQ synthesis protein E [Magnetospirillum magneticum
           AMB-1]
 gi|82946932|dbj|BAE51796.1| Coenzyme PQQ synthesis protein E [Magnetospirillum magneticum
           AMB-1]
          Length = 373

 Score = 35.8 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 12/89 (13%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR C +D +    ++      + +   +       +       + 
Sbjct: 43  CNL-----------ACRHCGSDCLRDNSSRDRELPPEAIKRELAAIAQACDPRHVTLAII 91

Query: 92  GGEPLLQVDVPLIQALNK-RGFEIAVETN 119
           GGEPL++ D+  + A     G+   + TN
Sbjct: 92  GGEPLIRRDIEEVGAFAAGLGYGWGITTN 120


>gi|191174498|ref|ZP_03035997.1| molybdenum cofactor biosynthesis protein A [Escherichia coli F11]
 gi|218699153|ref|YP_002406782.1| molybdenum cofactor biosynthesis protein A [Escherichia coli IAI39]
 gi|226704818|sp|B7NNL1|MOAA_ECO7I RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|190905211|gb|EDV64851.1| molybdenum cofactor biosynthesis protein A [Escherichia coli F11]
 gi|218369139|emb|CAR16894.1| molybdopterin biosynthesis protein A [Escherichia coli IAI39]
          Length = 329

 Score = 35.8 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 78  RDFTDIIAAVRENDAIRQIAVTTNG 102


>gi|222095767|ref|YP_002529824.1| molybdenum cofactor biosynthesis protein a [Bacillus cereus Q1]
 gi|221239825|gb|ACM12535.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus Q1]
          Length = 306

 Score = 35.8 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 53  DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-R 110
           D+  +Q         D++  L       G  + R   LTGGEPLL+ D+P LI  L K  
Sbjct: 9   DYAFLQEEC--LLTFDEIERLARLFISMGVNKIR---LTGGEPLLRKDLPKLIGRLAKLE 63

Query: 111 GFE-IAVETNG 120
           G + I + TNG
Sbjct: 64  GLKDIGLTTNG 74


>gi|218777947|ref|YP_002429265.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218759331|gb|ACL01797.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 292

 Score = 35.8 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 63  GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
              +  Q+ DLI++    G        L GGEPLL  ++   ++     G  ++++TNG
Sbjct: 36  PELSKSQIIDLIKQCSKAGTANLY---LFGGEPLLHPNLDDFVRTAKGLGMRVSMDTNG 91


>gi|218886964|ref|YP_002436285.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757918|gb|ACL08817.1| Radical SAM domain protein [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 450

 Score = 35.8 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 37/116 (31%), Gaps = 30/116 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR C            G    +  A L+              VL 
Sbjct: 32  CNL-----------HCRMC-VKHSSDIRAPEGDMTAETYAALLPAMPHLNG-----LVLN 74

Query: 92  G-GEPLLQVDVPLIQALNKRGFE----IAVETNGTI--------EPPQGIDWICVS 134
           G GEPLL  D+     L ++       +  +TNG +            G+D IC+S
Sbjct: 75  GVGEPLLHRDLETFIRLARQHMPPEGWVGFQTNGHLLTESRAHALLAAGLDRICLS 130


>gi|149203271|ref|ZP_01880241.1| pyrroloquinoline quinone biosynthesis protein PqqE [Roseovarius sp.
           TM1035]
 gi|149143104|gb|EDM31143.1| pyrroloquinoline quinone biosynthesis protein PqqE [Roseovarius sp.
           TM1035]
          Length = 363

 Score = 35.8 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 6/80 (7%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R    C +C             R      AD +       +       L+GGEP  + D+
Sbjct: 15  RCPLSCPYC-----SNPVELTARETELSTADWVSVFQQAADLGVLQLHLSGGEPASRRDL 69

Query: 102 P-LIQALNKRGFEIAVETNG 120
             LI+A    G    + T+G
Sbjct: 70  EELIKAARDAGLYTNLITSG 89


>gi|116753780|ref|YP_842898.1| radical SAM domain-containing protein [Methanosaeta thermophila
          PT]
 gi|116665231|gb|ABK14258.1| Radical SAM domain protein [Methanosaeta thermophila PT]
          Length = 383

 Score = 35.8 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 21/69 (30%)

Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
          GC            ++C +C               ++D + +++E               
Sbjct: 16 GCP-----------SKCSYC-----WSSEEGSPVMSIDTVKEIVE---WLKLFRDDPVTF 56

Query: 91 T--GGEPLL 97
          T  GGEPLL
Sbjct: 57 TFHGGEPLL 65


>gi|327262583|ref|XP_003216103.1| PREDICTED: molybdenum cofactor biosynthesis protein 1-like [Anolis
           carolinensis]
          Length = 560

 Score = 35.8 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       ++ + +C++C     G+Q T   +  +    ++I    +  ++      LTG
Sbjct: 82  NYLRISLTEKCNLRCQYC-MPEEGVQLTP--KSELLSTQEIITLAGLFVKEGVDKIRLTG 138

Query: 93  GEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GEPL++ D V +I  + K  G E IAV TNG
Sbjct: 139 GEPLIRPDVVDIIAQMRKLEGLETIAVTTNG 169


>gi|78060958|ref|YP_370866.1| radical SAM oxidoreductase [Burkholderia sp. 383]
 gi|77968843|gb|ABB10222.1| Radical SAM oxidoreductase [Burkholderia sp. 383]
          Length = 386

 Score = 35.8 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 22/116 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +V +  + ++E             +
Sbjct: 38  CNL-----------ACNGCGKIDY--PDPILNQRLSVQECLEAVDECG------APIVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
            GGEPLL  ++P +++ + KR   + + TN  +   + +D    SP     + + G
Sbjct: 79  AGGEPLLHKEMPEIVRGIMKRKKFVYLCTN-ALLMEKKMDDYQPSPYFVWSVHLDG 133


>gi|83999867|emb|CAI59980.1| putative (Fe-S) oxidoreductase [Streptomyces tenjimariensis]
          Length = 385

 Score = 35.8 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 22/116 (18%)

Query: 32  CNLWSGREQDRLSAQCR-FCDT--DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           CNL           +C  + D+  +   ++  K  + +++    L++E    G+KE  Y 
Sbjct: 38  CNLTC--------RECWMYGDSAAESTWLEEVKRDQISLEMWNGLLDEL-AHGQKEKVYL 88

Query: 89  VLTGGEPLLQV-DVPLIQALNKR--GFEIAVETNGTIEP-------PQGIDWICVS 134
            + GGEPL+    V L++    R     + + TN T+ P         GID + VS
Sbjct: 89  TIMGGEPLMHPQLVRLVREAKTRLPDCNLDMSTNATLLPRYAQELVDAGIDDVYVS 144


>gi|327400377|ref|YP_004341216.1| Radical SAM domain-containing protein [Archaeoglobus veneficus
           SNP6]
 gi|327315885|gb|AEA46501.1| Radical SAM domain protein [Archaeoglobus veneficus SNP6]
          Length = 392

 Score = 35.8 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
                  ++  ++IE+    G K     V+TGG+PL++ DV  ++     +G   A+  +
Sbjct: 37  HPNELTTEEAFNVIEQITEFG-KPYPLVVITGGDPLMRDDVFDIVSKATSKGIRTAIAFS 95

Query: 120 GT 121
           GT
Sbjct: 96  GT 97


>gi|255077056|ref|XP_002502181.1| predicted protein [Micromonas sp. RCC299]
 gi|226517446|gb|ACO63439.1| predicted protein [Micromonas sp. RCC299]
          Length = 395

 Score = 35.8 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 28  RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
           RF+ C       Q   + +C FC T   G +         D++ + +        +    
Sbjct: 145 RFTVC----VSSQVGCAMRCSFCATGRQGFR----RNLTSDEIVNQVLSMEDVFGRRATN 196

Query: 88  CVLTG-GEPLLQVDVPL 103
            V+ G GEPLL +   L
Sbjct: 197 VVMMGMGEPLLNLREVL 213


>gi|166363205|ref|YP_001655478.1| molybdopterin biosynthesis protein A [Microcystis aeruginosa
           NIES-843]
 gi|189028690|sp|B0JNC2|MOAA_MICAN RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|166085578|dbj|BAG00286.1| molybdopterin biosynthesis protein A [Microcystis aeruginosa
           NIES-843]
          Length = 329

 Score = 35.8 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR + +C++C   D +   ++         +++  L++  +I          LTGGEPLL
Sbjct: 13  DRCNFRCQYCLPEDAELAYVR--PQDLLTREEILTLVKNVFIPLGFRKFR--LTGGEPLL 68

Query: 98  QVDV 101
             +V
Sbjct: 69  HPEV 72


>gi|114771059|ref|ZP_01448499.1| radical SAM domain protein [alpha proteobacterium HTCC2255]
 gi|114548341|gb|EAU51227.1| radical SAM domain protein [alpha proteobacterium HTCC2255]
          Length = 316

 Score = 35.8 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119
             D+++D +++              TGGEP L  D + + +   +R +++ + TN
Sbjct: 66  TPDEVSDYLDQIDQREWATNE-IAFTGGEPFLNPDMIEIARRCLERNYKVLILTN 119


>gi|332139975|ref|YP_004425713.1| Signaling protein with a acyltransferase and GGDEF domains
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549997|gb|AEA96715.1| Signaling protein with a acyltransferase and GGDEF domains
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 632

 Score = 35.8 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 9/68 (13%)

Query: 70  LADLIEEQWITGEKEGRYCVLTGGE-------PLLQ--VDVPLIQALNKRGFEIAVETNG 120
           L D ++    +          TGG+       P+       PL ++L+ +   I V+T+G
Sbjct: 110 LLDHLDVAVYSQIGSKPIVTFTGGDAIPFVNRPVSHVKPLFPLPESLHSQRIIIRVQTSG 169

Query: 121 TIEPPQGI 128
           TI  P  I
Sbjct: 170 TIRLPIRI 177


>gi|327468552|gb|EGF14031.1| transcriptional regulator [Streptococcus sanguinis SK330]
          Length = 430

 Score = 35.8 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 11/83 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99
           +C++C   +   +         + +    EE+    +         GGEPLL      ++
Sbjct: 91  RCKYC---YEHFKNIGMSIETENAILKFAEEKLSNSQYHFLRIAWFGGEPLLGYKTIQRL 147

Query: 100 DVPLIQALNKRG--FEIAVETNG 120
            +  ++   + G  +  ++ TNG
Sbjct: 148 SLEFLKICERFGITYSASITTNG 170


>gi|295097942|emb|CBK87032.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 388

 Score = 35.8 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG +     V+ G
Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVVMMG 181

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232


>gi|294675020|ref|YP_003575636.1| putative Fe-S oxidoreductase [Prevotella ruminicola 23]
 gi|294471944|gb|ADE81333.1| putative Fe-S oxidoreductase [Prevotella ruminicola 23]
          Length = 361

 Score = 35.8 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           C L    +       CR C +D      +       +    +++      +    + +++
Sbjct: 37  CTLRCDLK-------CRHCGSD--CKMKSDSRDMPKEDFLRVLDGIAKKTDPHKVFVIIS 87

Query: 92  GGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQGI 128
           GGEPL++ D+    +A+  +GF   + TN     PQ  
Sbjct: 88  GGEPLMRQDIEECGRAIYDKGFPWGMVTNALHLTPQRW 125


>gi|294628651|ref|ZP_06707211.1| molybdenum cofactor biosynthesis protein A [Streptomyces sp. e14]
 gi|292831984|gb|EFF90333.1| molybdenum cofactor biosynthesis protein A [Streptomyces sp. e14]
          Length = 343

 Score = 35.8 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 14/105 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C  +       K      D++  LI                TGGEPLL+  
Sbjct: 33  DRCNLRCTYCMPEEGLQWLAKPDLLTDDEIVRLI--GIAVASLGIEEVRFTGGEPLLRPG 90

Query: 101 V----PLIQALNKRGFEIAVETNG-------TIEPPQGIDWICVS 134
           +      + AL  R    ++ TNG             G+D + VS
Sbjct: 91  LVGIVEHVTALEPRPVT-SLTTNGIGLKRTAAALKEAGLDRVNVS 134


>gi|288933575|ref|YP_003437634.1| oxygen-independent coproporphyrinogen III oxidase [Klebsiella
           variicola At-22]
 gi|288888304|gb|ADC56622.1| oxygen-independent coproporphyrinogen III oxidase [Klebsiella
           variicola At-22]
          Length = 378

 Score = 35.8 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L DL  +      +E     + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLQADAQYAQGREIGTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L            G EI +E N GT+E  + +D+
Sbjct: 66  GGTPSL-LSGPAMQTLLDGVRACLPLAAGAEITMEANPGTVEADRFVDY 113


>gi|261340821|ref|ZP_05968679.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC
           35316]
 gi|288317247|gb|EFC56185.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC
           35316]
          Length = 388

 Score = 35.8 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG +     V+ G
Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVVMMG 181

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232


>gi|146312652|ref|YP_001177726.1| hypothetical protein Ent638_3011 [Enterobacter sp. 638]
 gi|205829755|sp|A4WD95|RLMN_ENT38 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|145319528|gb|ABP61675.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter sp. 638]
          Length = 388

 Score = 35.8 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++    +TG +     V+ G
Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVVMMG 181

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL +   VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232


>gi|323701651|ref|ZP_08113323.1| glycyl-radical enzyme activating protein family [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533424|gb|EGB23291.1| glycyl-radical enzyme activating protein family [Desulfotomaculum
           nigrificans DSM 574]
          Length = 311

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
           G   +V+++  ++EE  I   + G    L+GGEPLLQ +    L++   +RG + A+ET 
Sbjct: 116 GKYMSVEEVLKIVEEDSIFYARSGGGLTLSGGEPLLQAEFVYKLLKEAKERGMDTAIETC 175

Query: 120 GTIEPPQG 127
           G ++  + 
Sbjct: 176 GYVDWKKA 183


>gi|311280339|ref|YP_003942570.1| molybdenum cofactor biosynthesis protein A [Enterobacter cloacae
           SCF1]
 gi|308749534|gb|ADO49286.1| molybdenum cofactor biosynthesis protein A [Enterobacter cloacae
           SCF1]
          Length = 329

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 19/134 (14%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     +  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPGSVSNNGFLTVDEIRRVTRAFSALGTEKVR---LTGGEPSLR 77

Query: 99  VD-VPLIQALNKRGF--EIAVETNG-------TIEPPQGIDWICVSP---KAGCDLKIKG 145
            D V +I A+ +     +IAV TNG        +    G+  + VS     A     I G
Sbjct: 78  RDFVDIIAAVRENPVIRQIAVTTNGYRLARDAALWRDAGLTHVNVSVDSLDARQFHAITG 137

Query: 146 GQELKLVFPQVNVS 159
             + + V   ++ +
Sbjct: 138 QDKFRQVMDGIDAA 151


>gi|300087157|ref|YP_003757679.1| Cfr family radical SAM protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299526890|gb|ADJ25358.1| radical SAM enzyme, Cfr family [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 356

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 9/97 (9%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GE 94
               Q      C +C T   G          ++Q+     E    G       V  G GE
Sbjct: 112 CVSSQVGCMIGCPYCATGMNGFHRNLSPGEMIEQVLYYRGETGRVGRNSLTNVVFMGMGE 171

Query: 95  PLLQVD-----VPLIQALNKRGF---EIAVETNGTIE 123
           PLL  D     V L+ + +  GF   +I + T+G + 
Sbjct: 172 PLLNYDNVVTAVSLLNSHHGMGFGARQITISTSGIVP 208


>gi|240949246|ref|ZP_04753590.1| molybdenum cofactor biosynthesis protein A [Actinobacillus minor
           NM305]
 gi|240296362|gb|EER47006.1| molybdenum cofactor biosynthesis protein A [Actinobacillus minor
           NM305]
          Length = 337

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 18/135 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D  + +C +C  D       K    +VD++  + +     G ++ R   +TGGEP L+ D
Sbjct: 31  DVCNFRCNYCLPDGYRPPSHKQTFLSVDEIQRVAQAFANLGTEKIR---ITGGEPTLRKD 87

Query: 101 -VPLIQALNK-RGFE-IAVETNG-------TIEPPQGIDWICVSPKAGCDLK----IKGG 146
            + +   L++  G   IA+ TNG        +    GI  + VS     D +    I G 
Sbjct: 88  FLEIAHRLSQTAGIRQIALTTNGYRMERDVELWQQAGITHLNVS-VDSLDPRQFHLITGE 146

Query: 147 QELKLVFPQVNVSPE 161
            +L  V   ++ + E
Sbjct: 147 NKLATVLNGIDRAFE 161


>gi|229093829|ref|ZP_04224927.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock3-42]
 gi|228689562|gb|EEL43371.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock3-42]
          Length = 339

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L +     G ++ R   LTG
Sbjct: 24  DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKLFVSIGVRKIR---LTG 76

Query: 93  GEPLLQVDVP-LIQALNKRG--FEIAVETN 119
           GEPLL+ D+  LI  L K     +I + TN
Sbjct: 77  GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 106


>gi|269926309|ref|YP_003322932.1| molybdenum cofactor biosynthesis protein A [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269789969|gb|ACZ42110.1| molybdenum cofactor biosynthesis protein A [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 335

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D+ + +C +C          K      D++  L+    I+ E+  +   +TGGEP ++  
Sbjct: 27  DKCNFRCTYCMPAEGLPWLKKSELLTFDEIERLV---RISVERGIKSVRVTGGEPTVRAG 83

Query: 101 VP-LIQALNK-RGFE-IAVETNG 120
           +P LI  L    G E +++ TNG
Sbjct: 84  LPELIHRLVNIPGLEDVSLTTNG 106


>gi|197124743|ref|YP_002136694.1| ribosomal RNA large subunit methyltransferase N [Anaeromyxobacter
           sp. K]
 gi|196174592|gb|ACG75565.1| Radical SAM domain protein [Anaeromyxobacter sp. K]
          Length = 338

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 59/186 (31%), Gaps = 22/186 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           ++     Q   +  C FC T  +G+  +      V QL  +        E+     V  G
Sbjct: 97  HVVCLSSQAGCALGCAFCATAKLGLDRSLRSWEMVSQLLAV----RADSERPITGVVFMG 152

Query: 93  -GEPLLQVDVPLIQ--ALNK-RG-----FEIAVETNGTIE------PPQGIDWICVSPKA 137
            GEP L  D  L    AL    G       I++ T G +              +C+S  A
Sbjct: 153 QGEPFLNYDEVLAAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGHKFRLCISLNA 212

Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-RFSLQP--MDGPFLEENTNLAISYCFQ 194
               K +    ++  FP   +            R +L+   + G  + E    A+     
Sbjct: 213 AMPWKRRALMPVEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGQLLA 272

Query: 195 NPKWRL 200
               RL
Sbjct: 273 GIPVRL 278


>gi|168234345|ref|ZP_02659403.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194468958|ref|ZP_03074942.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194455322|gb|EDX44161.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205331708|gb|EDZ18472.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 378

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L DL  +      +E +   + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLDADVVWAQGREVKTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L              EI +E N GT+E  + ID+
Sbjct: 66  GGTPSL-LSGPAMQTLLDGVRARLNLAANAEITMEANPGTVEADRFIDY 113


>gi|167759297|ref|ZP_02431424.1| hypothetical protein CLOSCI_01644 [Clostridium scindens ATCC 35704]
 gi|167663171|gb|EDS07301.1| hypothetical protein CLOSCI_01644 [Clostridium scindens ATCC 35704]
          Length = 302

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 47  CRFCDT--DFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL---LQV 99
           C  C T  DF      +  G  Y+VD+L   +++  +  E+ G    L+GGE +   +  
Sbjct: 82  CDGCGTCVDFCNQNLREIVGREYSVDELVKELKKDEMFYEESGGGVTLSGGEVMTADMDY 141

Query: 100 DVPLIQALNKRGFEIAVETNG 120
              L + L + G  + ++T G
Sbjct: 142 VEELAKKLYRHGITVTIDTCG 162


>gi|89896712|ref|YP_520199.1| hypothetical protein DSY3966 [Desulfitobacterium hafniense Y51]
 gi|89336160|dbj|BAE85755.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 323

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 12/95 (12%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C++C     G+Q     R    +++  ++      G +  R   +TGGEPL++ 
Sbjct: 18  DRCNLRCKYC-MPAEGVQWIPHERILTYEEILRVMRISTTLGFRRFR---ITGGEPLIRA 73

Query: 100 DVPLIQALNKRGFEIAVE-----TNGTIEPPQGID 129
            V  ++ L        VE     TNG +      D
Sbjct: 74  GV--LEFLQNASQIPGVEDLMLTTNGILLADMAED 106


>gi|296274304|ref|YP_003656935.1| coenzyme PQQ biosynthesis protein E [Arcobacter nitrofigilis DSM
           7299]
 gi|296098478|gb|ADG94428.1| coenzyme PQQ biosynthesis protein E [Arcobacter nitrofigilis DSM
           7299]
          Length = 368

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
            LW   E   +   +C +C    DF   + +       +    ++EE    G  +  +  
Sbjct: 8   PLWMLLELTHKCPLECTYCYNQLDFANTKDS----MTKEDWFRVMEEARAMGAVQLGF-- 61

Query: 90  LTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
            +GGEPLL  D + +++   +  F   + T+G
Sbjct: 62  -SGGEPLLNKDILEIVKKAAELKFYTNLITSG 92


>gi|293610193|ref|ZP_06692494.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827425|gb|EFF85789.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 384

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 14/105 (13%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIE----EQWITGEKEGRY 87
            L           +C +CD +      G          L  L+     +  +   +    
Sbjct: 10  PLSLYIHMPWCVRKCPYCDFNSHAVPDGALSAELEQTYLKALVADFETQVEMAQGRSIHS 69

Query: 88  CVLTGGEPLL-------QVDVPLIQALN-KRGFEIAVETN-GTIE 123
             + GG P L        +   L   L  + G EI +E N GT+E
Sbjct: 70  VFIGGGTPSLISAKGYAWLFEQLKSLLKFEDGCEITLEANPGTLE 114


>gi|289524083|ref|ZP_06440937.1| putative pyruvate formate-lyase-activating enzyme [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502739|gb|EFD23903.1| putative pyruvate formate-lyase-activating enzyme [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 305

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119
           G  Y V +L   IE   +  +  G     +GGEPL Q +  L  ++   K      ++T+
Sbjct: 108 GKEYTVGELMKEIERDVLYFDNSGGGVTFSGGEPLYQHEFLLEVLKECKKIDIHRTLDTS 167

Query: 120 G 120
           G
Sbjct: 168 G 168


>gi|256825802|ref|YP_003149762.1| GTP cyclohydrolase subunit MoaA [Kytococcus sedentarius DSM 20547]
 gi|256689195|gb|ACV06997.1| GTP cyclohydrolase subunit MoaA [Kytococcus sedentarius DSM 20547]
          Length = 338

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 47/131 (35%), Gaps = 39/131 (29%)

Query: 1   MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSG---CNLWSGREQDRLSAQCRFCDTDFVGI 57
           M    + + F          GRVA   R S    CNL           +C +C      +
Sbjct: 1   MSHLPLVDRF----------GRVATDLRLSVTDVCNL-----------RCTYC------L 33

Query: 58  QGTKGGRYNVDQLADLIEEQWITGEKEGRY-----CVLTGGEPLLQVDV-PLIQALNKR- 110
                G     ++ D  EE         R        LTGGEPL + D+  ++  L++  
Sbjct: 34  PEVVDGWLPRAEVLDR-EELVRLARIGTRTLGIEKIRLTGGEPLTRPDLVEIVADLHRAL 92

Query: 111 -GFEIAVETNG 120
              E+A+ TNG
Sbjct: 93  PEVELALTTNG 103


>gi|219852679|ref|YP_002467111.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
 gi|219546938|gb|ACL17388.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
          Length = 387

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 28/98 (28%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GC            ++C +C                ++ + D++       +        
Sbjct: 14  GCP-----------SRCHYC-----WSSDETSPVMKIETVRDVVA---WLNDFRDDRVTF 54

Query: 91  T--GGEPLL-------QVDVPLIQALNKRGFEIAVETN 119
           T  GGEPLL       Q    L + L+    E A++TN
Sbjct: 55  TFHGGEPLLAGADFYRQALPLLSEGLSHLNPEFAMQTN 92


>gi|212224561|ref|YP_002307797.1| molybdenum cofactor biosynthesis protein A [Thermococcus onnurineus
           NA1]
 gi|212009518|gb|ACJ16900.1| molybdenum cofactor biosynthesis protein A [Thermococcus onnurineus
           NA1]
          Length = 308

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 26/142 (18%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104
           +C FC     G            ++  L++   +      +   LTGGEP ++ D + ++
Sbjct: 25  RCFFC--HREGQHFNVRLELTPAEIERLVK---VASNLGIKKVKLTGGEPTVRDDIIEIV 79

Query: 105 QALNKRGFEIAVETNGTI-------EPPQGIDWICV---SPKAGCDLKIKGGQELKLVFP 154
           + +     ++++ TNG+            G+D + V   S K     KI G   L +V  
Sbjct: 80  RRIKPYLRDLSMTTNGSRLKELAKPLAKAGLDRVNVSLHSLKPDVYKKITGVDMLDVVLD 139

Query: 155 QVNVSPENYIGFDFERFSLQPM 176
                     G +     L P+
Sbjct: 140 ----------GIEEAVRYLSPV 151


>gi|161505526|ref|YP_001572638.1| hypothetical protein SARI_03691 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866873|gb|ABX23496.1| hypothetical protein SARI_03691 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 459

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GC++ +       +  C +C   + + +  +  K  R + + L   I +       +  
Sbjct: 32  AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRV 91

Query: 87  YCVLTGGEPLLQVDVPLIQ---ALNKR---GFEI--AVETNG 120
                GGEP + + +P  +   AL ++   G +I  A++TNG
Sbjct: 92  DFAWQGGEPTM-MGLPFFRRAIALCEKYADGRKISHALQTNG 132


>gi|159030305|emb|CAO91200.1| moaA [Microcystis aeruginosa PCC 7806]
          Length = 331

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR + +C++C   D +   ++         +++  L++  +I          LTGGEPLL
Sbjct: 15  DRCNFRCQYCLPEDAELAYVR--PQDLLTREEILTLVKNVFIPLGFRKFR--LTGGEPLL 70

Query: 98  QVDV 101
             +V
Sbjct: 71  HPEV 74


>gi|153004852|ref|YP_001379177.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter sp.
           Fw109-5]
 gi|152028425|gb|ABS26193.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter sp.
           Fw109-5]
          Length = 335

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 13/85 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C             + +     +L     +      R   LTGGEP L   
Sbjct: 31  DRCNFRCSYC------APMGPDRQEDPLTRPELARVVGVFARLGIRRVRLTGGEPTL--R 82

Query: 101 VPLIQALNK----RGF-EIAVETNG 120
             L+  +       G  EIA+ TNG
Sbjct: 83  RELLDIVRDVRATPGIEEIALTTNG 107


>gi|70729521|ref|YP_259259.1| heme biosynthesis protein [Pseudomonas fluorescens Pf-5]
 gi|68343820|gb|AAY91426.1| heme biosynthesis protein [Pseudomonas fluorescens Pf-5]
          Length = 502

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 18/90 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           C+L       R   +              + G  N  +   +I+     G +E     L 
Sbjct: 45  CDLKCLHCGSRAGHR--------------RPGELNTQECLSVIDSIAALGTRE---VTLI 87

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
           GGE  L+ D   LIQA++  G  +A++T G
Sbjct: 88  GGEAYLRKDWTRLIQAIHDHGMYVAIQTGG 117


>gi|213158400|ref|YP_002319698.1| molybdenum cofactor biosynthesis protein A [Acinetobacter baumannii
           AB0057]
 gi|215483142|ref|YP_002325349.1| molybdenum cofactor biosynthesis protein A [Acinetobacter baumannii
           AB307-0294]
 gi|294838641|ref|ZP_06783324.1| molybdenum cofactor biosynthesis protein A [Acinetobacter sp.
           6013113]
 gi|294859551|ref|ZP_06797320.1| molybdenum cofactor biosynthesis protein A [Acinetobacter sp.
           6013150]
 gi|301345476|ref|ZP_07226217.1| molybdenum cofactor biosynthesis protein A [Acinetobacter baumannii
           AB056]
 gi|301510810|ref|ZP_07236047.1| molybdenum cofactor biosynthesis protein A [Acinetobacter baumannii
           AB058]
 gi|301595060|ref|ZP_07240068.1| molybdenum cofactor biosynthesis protein A [Acinetobacter baumannii
           AB059]
 gi|213057560|gb|ACJ42462.1| molybdenum cofactor biosynthesis protein A [Acinetobacter baumannii
           AB0057]
 gi|213988902|gb|ACJ59201.1| molybdenum cofactor biosynthesis protein A [Acinetobacter baumannii
           AB307-0294]
          Length = 343

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 16/106 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C    +        + ++     L +      ++      +TGGEPL++  
Sbjct: 30  DRCNFKCVYC----MPEHPEWLNKQDLLSFEALFQFCSFMVQQGIESIRITGGEPLMRQG 85

Query: 101 VPL----IQALNKRGF-EIAVETNGTIEP-------PQGIDWICVS 134
           +      +QAL   G   I++ TNG             G+D + +S
Sbjct: 86  IVHFVRDLQALKALGLKRISMTTNGHYLAKYAQQLKDAGLDDLNIS 131


>gi|169795655|ref|YP_001713448.1| molybdopterin biosynthesis, protein A [Acinetobacter baumannii AYE]
 gi|169148582|emb|CAM86448.1| molybdopterin biosynthesis, protein A [Acinetobacter baumannii AYE]
          Length = 346

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 16/106 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C    +        + ++     L +      ++      +TGGEPL++  
Sbjct: 33  DRCNFKCVYC----MPEHPEWLNKQDLLSFEALFQFCSFMVQQGIESIRITGGEPLMRQG 88

Query: 101 VPL----IQALNKRGF-EIAVETNGTIEP-------PQGIDWICVS 134
           +      +QAL   G   I++ TNG             G+D + +S
Sbjct: 89  IVHFVRDLQALKALGLKRISMTTNGHYLAKYAQQLKDAGLDDLNIS 134


>gi|86358007|ref|YP_469899.1| molybdenum cofactor biosynthesis protein A [Rhizobium etli CFN 42]
 gi|123738324|sp|Q2K7L4|MOAA_RHIEC RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|86282109|gb|ABC91172.1| molybdenum cofactor biosynthesis protein [Rhizobium etli CFN 42]
          Length = 348

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          K     +++L  L       G  + R   LTGGEPL++ +
Sbjct: 38  DRCDFRCTYC-MAENMTFLPKKDLLTLEELDRLCSAFIAKGVSKIR---LTGGEPLVRKN 93

Query: 101 VP-LIQALNKR---GF-EIAVETNGT 121
           +  L++ L  +   G  E+ + TNG+
Sbjct: 94  IMYLVRKLGAKIGSGLDELTLTTNGS 119


>gi|116734668|ref|NP_001068566.1| molybdenum cofactor biosynthesis protein 1 isoform 4 [Homo sapiens]
 gi|56204714|emb|CAI20015.1| molybdenum cofactor synthesis 1 [Homo sapiens]
 gi|119624405|gb|EAX04000.1| molybdenum cofactor synthesis 1, isoform CRA_c [Homo sapiens]
 gi|119624406|gb|EAX04001.1| molybdenum cofactor synthesis 1, isoform CRA_c [Homo sapiens]
          Length = 385

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +       K      +++  L       G  + R   LT
Sbjct: 80  CNL-----------RCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGIDKIR---LT 125

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GGEPL++ D V ++  L +  G   I V TNG
Sbjct: 126 GGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNG 157


>gi|332140865|ref|YP_004426603.1| molybdenum cofactor biosynthesis protein A [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327550887|gb|AEA97605.1| molybdenum cofactor biosynthesis protein A [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 322

 Score = 35.8 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 33/149 (22%)

Query: 46  QCRFCDTDFVGIQGTKGGR----YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           +C++C        G +G       +++++  L++     G  + R   LTGGEP L+ D 
Sbjct: 24  RCQYC-----LPDGYEGPSSDQFMSLNEIDTLLKAFAKLGTSKVR---LTGGEPTLRRD- 74

Query: 102 PLIQALNKRG-----FEIAVETNGTI-------EPPQGIDWICVS-----PKAGCDLKIK 144
             +  L+          +A+ T+G             G+  + VS     P+      I 
Sbjct: 75  -FLDILHLTSNTPGIKRVAMTTHGARMEKFAHQWKDAGLHQVNVSIDSLDPRQFA--AIT 131

Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSL 173
           G  +LK V   ++ + +  +        L
Sbjct: 132 GQDKLKAVLRGLDSAIDAGLDVKVNSVLL 160


>gi|325262382|ref|ZP_08129119.1| radical SAM domain protein [Clostridium sp. D5]
 gi|324032214|gb|EGB93492.1| radical SAM domain protein [Clostridium sp. D5]
          Length = 363

 Score = 35.8 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 15/92 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       R +  C          +     +   ++   L  +   TG     + +L 
Sbjct: 71  CNLHCKGCYARANHLC---------EEEITKRQMTREEWGSLFSQAEETGIG---FILLA 118

Query: 92  GGEPLLQVDVPLIQALNKRG-FEIAVETNGTI 122
           GGEPLL+ DV    A++KR  F +   TNGT+
Sbjct: 119 GGEPLLRRDVLEEAAVHKRILFPVF--TNGTM 148


>gi|255014863|ref|ZP_05286989.1| putative heme biosynthesis protein [Bacteroides sp. 2_1_7]
          Length = 358

 Score = 35.8 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R +  CR C +D             V+    +I++     E      + TGGE L++ D+
Sbjct: 39  RCNVSCRHCGSDCHVSASVPD--MPVEDFLKVIDDITPYVEPNKVLVIFTGGEALIRKDI 96

Query: 102 PLI-QALNKRGFEIAVETNGTIEPPQGID 129
                 L +RG+   + +NG +   + +D
Sbjct: 97  EKCGLELYRRGYPWGIVSNGYLMTRERLD 125


>gi|119873386|ref|YP_931393.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM
           4184]
 gi|119674794|gb|ABL89050.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 364

 Score = 35.8 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 9/101 (8%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
           S  C +C       Q  +   Y  +     ++E      +        GG+P  Q    L
Sbjct: 148 SLDCLYC-------QNWQYRTYPSNPRLVSVDELERAMGRRVTCVCFFGGDPAPQTVHAL 200

Query: 104 I--QALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
           +  +   ++G  +  ET+G I P      + +S K G  +K
Sbjct: 201 LVAKRAAEKGIRVCWETSGQIAPHLLDKVVDISLKTGGIVK 241


>gi|2645879|gb|AAB87523.1| molybdenum cofactor biosynthesis protein A [Homo sapiens]
          Length = 385

 Score = 35.8 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +       K      +++  L       G  + R   LT
Sbjct: 80  CNL-----------RCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGIDKIR---LT 125

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GGEPL++ D V ++  L +  G   I V TNG
Sbjct: 126 GGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNG 157


>gi|327400600|ref|YP_004341439.1| Radical SAM domain-containing protein [Archaeoglobus veneficus
           SNP6]
 gi|327316108|gb|AEA46724.1| Radical SAM domain protein [Archaeoglobus veneficus SNP6]
          Length = 394

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 42/109 (38%), Gaps = 24/109 (22%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD---LIEEQWITGEKEGR 86
           +GCNL            C FC       +G +      D L +   L E+     E +G+
Sbjct: 104 TGCNL-----------NCIFC----SVDEGRRSRTRAADYLVEPEYLAEKLKEIAEFKGK 148

Query: 87  YCV--LTG-GEPLLQVDVPLIQALNKRGFEIAV---ETNGTIEPPQGID 129
                + G GEPLL   +  +     R  E+ V   +TNGT+     ID
Sbjct: 149 GVEAHIDGQGEPLLYPYMEELLERISRIKEVEVISMQTNGTLLNDDRID 197


>gi|300022010|ref|YP_003754621.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523831|gb|ADJ22300.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 382

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGID 129
                V+ GGEPLL  ++P +++    +G  + V TN  +   + ID
Sbjct: 72  GAPVVVMAGGEPLLHKELPEIVEGALAKGKFVTVCTN-ALLLEKKID 117


>gi|239905434|ref|YP_002952173.1| hypothetical protein DMR_07960 [Desulfovibrio magneticus RS-1]
 gi|239795298|dbj|BAH74287.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 813

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 29/92 (31%), Gaps = 19/92 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C FC           G           + E    G    R   LT
Sbjct: 108 CNLAC--------RHCLFC------SGPAAGAELPTAVALARVAEAAALG---CRVFALT 150

Query: 92  GGEPLLQVDVP--LIQALNKRGFEIAVETNGT 121
           GGEP     +   +  AL   G  +A+ TNGT
Sbjct: 151 GGEPFCHPGLSDIVAAALAVPGSHVAILTNGT 182


>gi|289597074|ref|YP_003483770.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|289534861|gb|ADD09208.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
          Length = 356

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 38/188 (20%)

Query: 29  FSG-CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
            +G CNL            CR+C        G+        ++   IE+     EK+   
Sbjct: 7   LTGVCNL-----------NCRYC-------GGSIPEEVMPHEIQYSIEDLKNFVEKDKDA 48

Query: 88  CV-LTGGEPLL--QVDVPLIQALNKRGFEIAVETNG--TIEPPQG----IDWICVS---- 134
            +   GGEPLL  +    ++  +  + F +   TNG    + P+     ID I VS    
Sbjct: 49  IIAFYGGEPLLRIEKMKEIMDNIRAKRFVVQ--TNGIFLHKIPEEYLNRIDAILVSIDGV 106

Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
           P+     +  G  E+  V  +V    E Y G    R ++      + +    L++ +   
Sbjct: 107 PEVTNYYRGNGVYEI--VVDRVRKIREKYKGDLIARMAVSEESDIYRDVTHLLSLPF--D 162

Query: 195 NPKWRLSV 202
           +  W+L+V
Sbjct: 163 HVHWQLNV 170


>gi|312195058|ref|YP_004015119.1| molybdenum cofactor biosynthesis protein A [Frankia sp. EuI1c]
 gi|311226394|gb|ADP79249.1| molybdenum cofactor biosynthesis protein A [Frankia sp. EuI1c]
          Length = 357

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 14/105 (13%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C     G+    G      D++  L+               LTGGEP L+ 
Sbjct: 49  DRCTLRCTYC-MPAEGVPWLPGTAILTDDEVVRLVR--IAVERLGVTEVRLTGGEPTLRP 105

Query: 100 DV-PLIQALNKR--GFEIAVETNG-TIE------PPQGIDWICVS 134
           ++  L+  L       E+++ TNG T+          G+D + VS
Sbjct: 106 NLVELVGRLAALRPRPELSLTTNGLTLARSAGALRSAGLDRVNVS 150


>gi|239905079|ref|YP_002951818.1| hypothetical protein DMR_04410 [Desulfovibrio magneticus RS-1]
 gi|239794943|dbj|BAH73932.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 395

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            +       R + +C  C   +   +           +   +I++            + +
Sbjct: 40  PVVVWNMTRRCNLKCVHC---YAKAVDPEGADDIGTVEAKAMIDDL---AAYGAPVMLFS 93

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEPL++ D+  L      +G    + TNGT+
Sbjct: 94  GGEPLVRKDLTELASHAVSKGMRAVISTNGTL 125


>gi|167630145|ref|YP_001680644.1| anaerobic ribonucleoside-triphosphate reductase activating protein,
           putative [Heliobacterium modesticaldum Ice1]
 gi|167592885|gb|ABZ84633.1| anaerobic ribonucleoside-triphosphate reductase activating protein,
           putative [Heliobacterium modesticaldum Ice1]
          Length = 167

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 22/89 (24%), Gaps = 21/89 (23%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           R  +F    GC             +C  C           G    ++ +   I       
Sbjct: 20  RATIF--AQGCP-----------HRCAGCHNPHT-HDPLGGVEMELEAVLAEIGRARHIQ 65

Query: 82  EKEGRYCVLTGGEPL--LQVDVPLIQALN 108
                    +GGEP    Q    L + L 
Sbjct: 66  G-----VTFSGGEPFEQAQAFAELARRLK 89


>gi|87312365|ref|ZP_01094457.1| molybdopterin cofactor synthesis protein A [Blastopirellula marina
           DSM 3645]
 gi|87284930|gb|EAQ76872.1| molybdopterin cofactor synthesis protein A [Blastopirellula marina
           DSM 3645]
          Length = 333

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 8/91 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTK-GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C      +Q          +++  +       G ++ R   LTGGEPL++ 
Sbjct: 24  DRCNIRCFYC-MPLENVQFKPRAELLTFEEIERVARLAVSLGVRKFR---LTGGEPLVRA 79

Query: 100 DV-PLIQALNK-RGFE-IAVETNGTIEPPQG 127
            +  LIQ L    G E +A+ TNG +   Q 
Sbjct: 80  QLHELIQRLAAIPGVEDLALTTNGVLLADQA 110


>gi|238026482|ref|YP_002910713.1| coproporphyrinogen III oxidase [Burkholderia glumae BGR1]
 gi|237875676|gb|ACR28009.1| Putative oxygen-independent coproporphyrinogen III oxidase
           [Burkholderia glumae BGR1]
          Length = 406

 Score = 35.4 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 17/106 (16%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87
            L           +C +CD         KG R+   +  D +             ++   
Sbjct: 28  PLALYIHFPWCVRKCPYCD---FNSHEWKGERFPEQEYLDALRADLEQALPFVWGRQVHT 84

Query: 88  CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124
             + GG P L     L + L             EI +E N GT E 
Sbjct: 85  VFIGGGTPSLLSAGGLDRLLSDVRALLPLDADAEITLEANPGTFEA 130


>gi|258406075|ref|YP_003198817.1| Radical SAM domain-containing protein [Desulfohalobium retbaense
           DSM 5692]
 gi|257798302|gb|ACV69239.1| Radical SAM domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 363

 Score = 35.4 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 17/96 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR        +    G      +  +LI+    TG       + T
Sbjct: 23  CNLAC--------KHCR----AEAHLDPYPGE-LTTGEAKNLIDTFPQTG---SPIIIFT 66

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
           GGEPLL+ D+  L++    +     +  NGT+  P 
Sbjct: 67  GGEPLLRPDLFDLVRHAKSKDLRCVMAPNGTLITPD 102


>gi|210620897|ref|ZP_03292314.1| hypothetical protein CLOHIR_00257 [Clostridium hiranonis DSM 13275]
 gi|210155109|gb|EEA86115.1| hypothetical protein CLOHIR_00257 [Clostridium hiranonis DSM 13275]
          Length = 348

 Score = 35.4 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 24/110 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVG--IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
           CNL           +C +C   + G         +   D+  + I+E+    + + R   
Sbjct: 11  CNL-----------RCSYC---YEGGCKPKKYMNKETADKCIEFIKEKLKEEKDDKRPLW 56

Query: 90  LT--GGEPLL------QVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           +T  GGEPLL       +   L   +  R     + TNGTI   + +++I
Sbjct: 57  ITLHGGEPLLNFDIVKYIKNKLDDEIVDRKIIYDMTTNGTIMNDEILEFI 106


>gi|170084371|ref|XP_001873409.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650961|gb|EDR15201.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 525

 Score = 35.4 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 19/94 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C     G++ +  G+   DQ  ++I    +  +       LT
Sbjct: 21  CNL-----------RCFYC-MPSEGVELSPQGKLLTDQ--EIIRLASLFVDNGVTKIRLT 66

Query: 92  GGEPLLQVD-VPLIQ---ALNKRGFE-IAVETNG 120
           GGEP ++   + L++   AL  RG E IA+ +NG
Sbjct: 67  GGEPSIRRGILELVRNLHALKDRGLESIAMTSNG 100


>gi|319654134|ref|ZP_08008223.1| hypothetical protein HMPREF1013_04843 [Bacillus sp. 2_A_57_CT2]
 gi|317394068|gb|EFV74817.1| hypothetical protein HMPREF1013_04843 [Bacillus sp. 2_A_57_CT2]
          Length = 394

 Score = 35.4 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 12/61 (19%)

Query: 86  RYCVLTGGEPLLQVD------VPLIQALNKRGFEIAVETNGTIEPP------QGIDWICV 133
           R   +TGGEP+L +       +PL++  ++RG    + +N T+E          ID + +
Sbjct: 79  RTMSITGGEPMLSLKSVENYVLPLLKYAHRRGIYTQINSNLTLELDRYKLIAPYIDVLHI 138

Query: 134 S 134
           S
Sbjct: 139 S 139


>gi|295102362|emb|CBK99907.1| GTP cyclohydrolase subunit MoaA [Faecalibacterium prausnitzii L2-6]
          Length = 325

 Score = 35.4 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +CR+C    +     K  R  V    + +    +          +T
Sbjct: 20  CNL-----------RCRYC----MPDGVEKLEREAVLTYEEFLRLAALFARCGVDTVRVT 64

Query: 92  GGEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           GGEPL++  V  L+  L    G   + + TNG
Sbjct: 65  GGEPLVRKGVDQLVAGLKAIPGIRKVTMTTNG 96


>gi|266625528|ref|ZP_06118463.1| putative pyruvate formate-lyase activating enzyme [Clostridium
           hathewayi DSM 13479]
 gi|288862567|gb|EFC94865.1| putative pyruvate formate-lyase activating enzyme [Clostridium
           hathewayi DSM 13479]
          Length = 276

 Score = 35.4 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 40/151 (26%), Gaps = 35/151 (23%)

Query: 24  AVFCRFSGCNLWS------------------------------GREQDRLSAQCRFCDTD 53
           AVF    GCN+                                G        +C  CD  
Sbjct: 22  AVF--LQGCNISCAYCHNPETQNLCTGCGVCVDGCPAGALKLNGETVVWDEDKCISCDRC 79

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRG 111
                     +       ++  +         R   ++GGE  L  +    L     K G
Sbjct: 80  IAVCPSFASPKVREMSAEEVFCKV-SLNMPFIRGITVSGGECCLYPEFLKELFGLCRKAG 138

Query: 112 FEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
               +++NG ++     + + +      D+K
Sbjct: 139 LSCLIDSNGMVDFSSCPELLDLCEGVMLDVK 169


>gi|242279562|ref|YP_002991691.1| glycyl-radical enzyme activating protein family [Desulfovibrio
           salexigens DSM 2638]
 gi|242122456|gb|ACS80152.1| glycyl-radical enzyme activating protein family [Desulfovibrio
           salexigens DSM 2638]
          Length = 320

 Score = 35.4 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)

Query: 88  CVLTGGEPLLQVDVPLIQALNK---RGFEIAVET 118
              +GGEP +Q    LI AL     RG   A+E+
Sbjct: 147 VTFSGGEPTMQSAF-LIAALKDAKERGLHTAIES 179


>gi|254519002|ref|ZP_05131058.1| radical SAM domain-containing protein [Clostridium sp. 7_2_43FAA]
 gi|226912751|gb|EEH97952.1| radical SAM domain-containing protein [Clostridium sp. 7_2_43FAA]
          Length = 414

 Score = 35.4 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 42  RLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           R    C  C    F+  +  K       ++  +I+     G         TGGEPLL+ D
Sbjct: 116 RCMYNCWHCSAKRFIKDKNDKSKEMTTYEIKKIIKALQDLGVG---IIGFTGGEPLLRND 172

Query: 101 VP 102
           + 
Sbjct: 173 LE 174


>gi|194390588|dbj|BAG62053.1| unnamed protein product [Homo sapiens]
          Length = 385

 Score = 35.4 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +       K      +++  L       G  + R   LT
Sbjct: 80  CNL-----------RCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGIDKIR---LT 125

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GGEPL++ D V ++  L +  G   I V TNG
Sbjct: 126 GGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNG 157


>gi|78189894|ref|YP_380232.1| Elongator protein 3/MiaB/NifB [Chlorobium chlorochromatii CaD3]
 gi|78172093|gb|ABB29189.1| GTP cyclohydrolase subunit MoaA [Chlorobium chlorochromatii CaD3]
          Length = 333

 Score = 35.4 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 20/99 (20%)

Query: 28  RFSG---CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
           R +    CNL           +C +C ++            +  +L  +IE     G ++
Sbjct: 23  RLAVTSACNL-----------RCGYCLSEAHEPATLHQPLLSTAELCTIIELLAKHGIQK 71

Query: 85  GRYCVLTGGEPLLQVDV-PLIQALNKRG--FEIAVETNG 120
            R+   TGGEPLL+ D+  LI    +      I + TNG
Sbjct: 72  LRF---TGGEPLLRSDIVALIAMARQHSSIRTIGLTTNG 107


>gi|78221558|ref|YP_383305.1| radical SAM:molybdenum cofactor synthesis-like [Geobacter
           metallireducens GS-15]
 gi|78192813|gb|ABB30580.1| GTP cyclohydrolase subunit MoaA [Geobacter metallireducens GS-15]
          Length = 326

 Score = 35.4 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 8/88 (9%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +CR+C     G++    G   + + L  +       G ++ R   +TGGEPL++ 
Sbjct: 20  DRCNLRCRYC-MPAAGVEKLGHGDILSYEDLFRIARAAVAVGIEKIR---VTGGEPLVRK 75

Query: 100 DV-PLIQALNKR-GF-EIAVETNGTIEP 124
            + P +  L K  G  E+ + TNG + P
Sbjct: 76  GIVPFLARLAKLPGLRELVLTTNGFLLP 103


>gi|306821751|ref|ZP_07455347.1| molybdenum cofactor biosynthesis protein A [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304550220|gb|EFM38215.1| molybdenum cofactor biosynthesis protein A [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 145

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR +  C +C     G       +  +  + ++ +      +       LTG
Sbjct: 10  NYVRLSLTDRCNLNCVYC--MPKGQSPVFLQKDEIMSVDEIYKICLYLSKIGIDTIKLTG 67

Query: 93  GEPLLQVDV-PLIQALN--KRGFEIAVETNGT 121
           GEPLL+ D   +++ +        I + TNGT
Sbjct: 68  GEPLLREDFEEVVKKIKTIDEIKNITLTTNGT 99


>gi|158338612|ref|YP_001519789.1| molybdenum cofactor biosynthesis protein A [Acaryochloris marina
           MBIC11017]
 gi|189028680|sp|B0CDZ6|MOAA_ACAM1 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|158308853|gb|ABW30470.1| molybdenum cofactor biosynthesis protein A [Acaryochloris marina
           MBIC11017]
          Length = 331

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLL 97
           DR + +C++C  DT  +             +L  LI +     G    R   LTGGEPLL
Sbjct: 13  DRCNFRCQYCMPDTQDLQFL-QPTAVLTATELLTLIRDVFIPLGFARFR---LTGGEPLL 68

Query: 98  QVDV 101
           + D+
Sbjct: 69  RPDI 72


>gi|149922400|ref|ZP_01910834.1| Radical SAM [Plesiocystis pacifica SIR-1]
 gi|149816762|gb|EDM76252.1| Radical SAM [Plesiocystis pacifica SIR-1]
          Length = 307

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 38  REQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           R     ++ C  C    V    T+  R   + LA+L++ +    ++     V   GEP L
Sbjct: 3   RLTTDCNSGCHHCTVADVPADQTRAPR---EALAELVQARKQGSDE----LVFMRGEPTL 55

Query: 98  QVDVP-LIQALNKRGFE-IAVETNG 120
           + D+P L +A  K G+  I ++TNG
Sbjct: 56  RPDLPALAKAARKVGYRLIQIQTNG 80


>gi|228993472|ref|ZP_04153382.1| Molybdenum cofactor biosynthesis protein A [Bacillus pseudomycoides
           DSM 12442]
 gi|228766294|gb|EEM14938.1| Molybdenum cofactor biosynthesis protein A [Bacillus pseudomycoides
           DSM 12442]
          Length = 306

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 8/71 (11%)

Query: 53  DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR- 110
           D+  +Q         D++  L +     G K+ R   LTGGEPLL+ ++P LI+ L K  
Sbjct: 9   DYAFLQEEF--LLTFDEIERLAKLFVGMGVKKIR---LTGGEPLLRKELPKLIERLAKLD 63

Query: 111 GFE-IAVETNG 120
           G   I + TNG
Sbjct: 64  GLTDIGLTTNG 74


>gi|228999509|ref|ZP_04159087.1| Molybdenum cofactor biosynthesis protein A [Bacillus mycoides
           Rock3-17]
 gi|229007065|ref|ZP_04164692.1| Molybdenum cofactor biosynthesis protein A [Bacillus mycoides
           Rock1-4]
 gi|228754214|gb|EEM03632.1| Molybdenum cofactor biosynthesis protein A [Bacillus mycoides
           Rock1-4]
 gi|228760220|gb|EEM09188.1| Molybdenum cofactor biosynthesis protein A [Bacillus mycoides
           Rock3-17]
          Length = 306

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 8/71 (11%)

Query: 53  DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR- 110
           D+  +Q         D++  L +     G K+ R   LTGGEPLL+ ++P LI+ L K  
Sbjct: 9   DYAFLQEEF--LLTFDEIERLAKLFVGMGVKKIR---LTGGEPLLRKELPKLIERLAKLD 63

Query: 111 GFE-IAVETNG 120
           G   I + TNG
Sbjct: 64  GLTDIGLTTNG 74


>gi|242278331|ref|YP_002990460.1| methyltransferase type 11 [Desulfovibrio salexigens DSM 2638]
 gi|242121225|gb|ACS78921.1| Methyltransferase type 11 [Desulfovibrio salexigens DSM 2638]
          Length = 1034

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 19/91 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN+          + C F  +               +++ +L  +    G K      LT
Sbjct: 95  CNMSC--------SHCLFSSSPQA------KRELATERVLELTAQAEALGCKMFA---LT 137

Query: 92  GGEPLLQVDVP--LIQALNKRGFEIAVETNG 120
           GGEPL+   +   L + L      +AV TNG
Sbjct: 138 GGEPLVHKGLDKILTRMLEIESSHVAVLTNG 168


>gi|200386947|ref|ZP_03213559.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199604045|gb|EDZ02590.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 447

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GC++ +       +  C +C   + + +  +  K  R + + L   I +       +  
Sbjct: 20  AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 79

Query: 87  YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120
                GGEP + + +P    + AL ++   G +I  A++TNG
Sbjct: 80  DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 120


>gi|37680378|ref|NP_934987.1| hypothetical protein VV2194 [Vibrio vulnificus YJ016]
 gi|37199125|dbj|BAC94958.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 306

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-------EKEGRYCVLTGGEPLL-- 97
           C +C   +            + ++   + E +++        + +       GGEPLL  
Sbjct: 38  CHYCYAKWAKPNELHRNVDEMKRVLSKLAEYFLSPNPIQQQLQYQSVRLNFAGGEPLLLK 97

Query: 98  QVDVPLIQALNKRGFEIAVETNGTI 122
           Q  +  +    + GFE ++ TNG +
Sbjct: 98  QRLIDALDFAIELGFETSIITNGHL 122


>gi|315650922|ref|ZP_07903963.1| molybdenum cofactor biosynthesis protein A [Eubacterium saburreum
           DSM 3986]
 gi|315486836|gb|EFU77177.1| molybdenum cofactor biosynthesis protein A [Eubacterium saburreum
           DSM 3986]
          Length = 323

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           +R + +C +C    +          ++D++  +       G  + +   +TGGEPL++  
Sbjct: 18  NRCNFRCTYC----MPETKKVDDTLSLDEIYQVAFAASKCGITKFK---ITGGEPLVRDG 70

Query: 101 V-PLIQALNKRG--FEIAVETNG 120
           +   I+ L+      +I + TNG
Sbjct: 71  IVDFIRRLHDIDSVKDITMTTNG 93


>gi|301063120|ref|ZP_07203675.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300442764|gb|EFK06974.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 328

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 20/102 (19%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEK 83
           +F     CN+            C +C   F   ++  +     +     L+      G  
Sbjct: 7   IFV-TYRCNM-----------HCPYC---FASHLKAVQKKDMTLGDFQRLLAWMRGAGVV 51

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP 124
              +    GGEP L  ++  +++     G  + + TN T +P
Sbjct: 52  MAGFI---GGEPTLHPNLKEMMKMTRDAGISVTLFTNATFDP 90


>gi|205354475|ref|YP_002228276.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205274256|emb|CAR39275.1| putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326629608|gb|EGE35951.1| putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 447

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GC++ +       +  C +C   + + +  +  K  R + + L   I +       +  
Sbjct: 20  AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 79

Query: 87  YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120
                GGEP + + +P    + AL ++   G +I  A++TNG
Sbjct: 80  DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 120


>gi|164687526|ref|ZP_02211554.1| hypothetical protein CLOBAR_01167 [Clostridium bartlettii DSM
           16795]
 gi|164603300|gb|EDQ96765.1| hypothetical protein CLOBAR_01167 [Clostridium bartlettii DSM
           16795]
          Length = 449

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 29/113 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD-QLADLIEEQWITGEKEGRYCVL 90
           CNL           +C++C   F       G +  ++ ++     +  I      R   +
Sbjct: 96  CNL-----------RCKYC---FASQGDFGGAKEIMNFEVGKAAIDYLIANSGNRRNLEI 141

Query: 91  T--GGEPLLQVDVPLIQALNKRGFEIA----------VETNGTIEPPQGIDWI 131
              GGEPL+  +  +++ L + G ++           + TNG +   + I +I
Sbjct: 142 DFFGGEPLM--NFEVVKQLVEYGRKVEKTRGKNIRFTITTNGVLLDDEKIKYI 192


>gi|160903003|ref|YP_001568584.1| radical SAM domain-containing protein [Petrotoga mobilis SJ95]
 gi|160360647|gb|ABX32261.1| Radical SAM domain protein [Petrotoga mobilis SJ95]
          Length = 455

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 46  QCRFCDTDFVGIQGTK----GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
            C +C   F G +         + + + + + I++++   + E     LTGGEPLL    
Sbjct: 103 NCVYC---FQGEENKNRNITFKKNDSELIVNFIKKKFDASDDEKLTLTLTGGEPLL--KF 157

Query: 102 PLIQA 106
           PLIQ 
Sbjct: 158 PLIQE 162


>gi|56415820|ref|YP_152895.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197364750|ref|YP_002144387.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|207859166|ref|YP_002245817.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|56130077|gb|AAV79583.1| putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197096227|emb|CAR61824.1| putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|206710969|emb|CAR35337.1| putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 447

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GC++ +       +  C +C   + + +  +  K  R + + L   I +       +  
Sbjct: 20  AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 79

Query: 87  YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120
                GGEP + + +P    + AL ++   G +I  A++TNG
Sbjct: 80  DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 120


>gi|16767236|ref|NP_462851.1| arylsulfatase regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|205358021|ref|ZP_02574999.2| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|16422531|gb|AAL22810.1| putative arylsulfatase regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|205328160|gb|EDZ14924.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261249089|emb|CBG26950.1| putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267996250|gb|ACY91135.1| putative arylsulfatase regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160481|emb|CBW20011.1| putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323132314|gb|ADX19744.1| putative arylsulfatase regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 447

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GC++ +       +  C +C   + + +  +  K  R + + L   I +       +  
Sbjct: 20  AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 79

Query: 87  YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120
                GGEP + + +P    + AL ++   G +I  A++TNG
Sbjct: 80  DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 120


>gi|328951852|ref|YP_004369186.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452176|gb|AEB08005.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 344

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 18/89 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C+ C   F            +++   L  + +  G  +    V+ 
Sbjct: 12  CNL-----------RCKHC---FTNAGTPTPNELTLNEYDVLFRDLYKMGVFQ---LVIA 54

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETN 119
           GGEP ++ DV  ++       F + +ETN
Sbjct: 55  GGEPFIRPDVWKIMDLAEALDFCLFIETN 83


>gi|323697523|ref|ZP_08109435.1| Radical SAM domain protein [Desulfovibrio sp. ND132]
 gi|323457455|gb|EGB13320.1| Radical SAM domain protein [Desulfovibrio desulfuricans ND132]
          Length = 322

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 21/110 (19%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEK 83
           +F     CNL            C +C   F   +          +  A L+E        
Sbjct: 4   IFV-TYRCNL-----------ACSYC---FARELHAEYPEDLTEENFARLLEWMERAQLP 48

Query: 84  EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
              +    GGEP L   +P +++   + G    + TNG + P    D + 
Sbjct: 49  AAAFI---GGEPTLHPLLPYMVERTAEAGIAPVLFTNG-LFPTDLADRLT 94


>gi|307547057|ref|YP_003899536.1| coproporphyrinogen III oxidase [Halomonas elongata DSM 2581]
 gi|307219081|emb|CBV44351.1| coproporphyrinogen III oxidase [Halomonas elongata DSM 2581]
          Length = 391

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 16/105 (15%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWI----TGEKEGRY 87
            L           +C +CD  F      +G     ++ LA LIE+          +E   
Sbjct: 7   PLALYVHVPWCVRKCPYCD--FNSHGVGRGAELPEEEYLAALIEDLDADLPLAAGREIVS 64

Query: 88  CVLTGGEPLLQVD---VPLIQALNKR-----GFEIAVETN-GTIE 123
             + GG P L      + L++AL  R       EI +E N GT+E
Sbjct: 65  VFIGGGTPSLMSASFYLRLLEALQARLPLASDIEITLEANPGTLE 109


>gi|302669347|ref|YP_003832497.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus
           B316]
 gi|302397011|gb|ADL35915.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus
           B316]
          Length = 357

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFE 113
                +   ++++             +TGGEPLL      ++   ++ GF+
Sbjct: 56  EMTASEWKQILDQVKEDFSDHLPQINVTGGEPLLYPGFEEVMSYAHELGFK 106


>gi|302671353|ref|YP_003831313.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus
           B316]
 gi|302395826|gb|ADL34731.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus
           B316]
          Length = 479

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 25/111 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRY--C 88
           CNL           +C++C   F       G R    +++     +  I      R    
Sbjct: 129 CNL-----------RCKYC---FADEGEYHGRRALMTEEVGKAALDFLIKNSGNRRNLEV 174

Query: 89  VLTGGEPLLQVDVP--------LIQALNKRGFEIAVETNGTIEPPQGIDWI 131
              GGEPL+  +V          I+  + + F   + TNGT+   + ++++
Sbjct: 175 DFFGGEPLMNWEVVKKIVEYGRSIEKEHNKNFRFTITTNGTLLNDEILEYV 225


>gi|268608314|ref|ZP_06142041.1| predicted Fe-S oxidoreductase [Ruminococcus flavefaciens FD-1]
          Length = 357

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100
           R +  C  C +        K     V+    L+ E        G+   +TGGEPLL+ + 
Sbjct: 37  RCNEHCLHCGS---WCGDVKSEELTVEDYRKLLTEVKEDMTTYGKMLCITGGEPLLRNEF 93

Query: 101 VPLIQALNKRGFE 113
             ++   +  GF 
Sbjct: 94  FDIMGIAHDLGFH 106


>gi|221201199|ref|ZP_03574239.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Burkholderia multivorans CGD2M]
 gi|221206347|ref|ZP_03579360.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Burkholderia multivorans CGD2]
 gi|221213627|ref|ZP_03586601.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Burkholderia multivorans CGD1]
 gi|221166416|gb|EED98888.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Burkholderia multivorans CGD1]
 gi|221173656|gb|EEE06090.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Burkholderia multivorans CGD2]
 gi|221179049|gb|EEE11456.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Burkholderia multivorans CGD2M]
          Length = 404

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 17/106 (16%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87
            L           +C +CD         KG R+   +  D +             ++   
Sbjct: 28  PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPETEYLDALRADLEHALPLVWGRQVHT 84

Query: 88  CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124
             + GG P L     L + L             EI +E N GT E 
Sbjct: 85  VFIGGGTPSLLSAAGLDRLLSDVRALLPLDADAEITLEANPGTFEA 130


>gi|167586473|ref|ZP_02378861.1| coproporphyrinogen III oxidase [Burkholderia ubonensis Bu]
          Length = 404

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 17/106 (16%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87
            L           +C +CD         KG R+   +  D +             ++   
Sbjct: 28  PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPETEYLDALRADLEHALPLVWGRQVHT 84

Query: 88  CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124
             + GG P L     L + L             EI +E N GT E 
Sbjct: 85  VFIGGGTPSLLSAAGLDRLLSDVRALLPLDADAEITLEANPGTFEA 130


>gi|160902142|ref|YP_001567723.1| radical SAM domain-containing protein [Petrotoga mobilis SJ95]
 gi|160359786|gb|ABX31400.1| Radical SAM domain protein [Petrotoga mobilis SJ95]
          Length = 450

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 24/97 (24%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C   +   +G        + +A+ I    +   K   +    
Sbjct: 103 CNL-----------DCIYC---YETHEGPTMDEKTTETVANYIS--TVAKSKRRIHIGWF 146

Query: 92  GGEPLL------QVDVPLIQALNK--RGFEIAVETNG 120
           GGEPLL       ++  +I+A  +    F  ++ TNG
Sbjct: 147 GGEPLLKFDTMKYINEKVIKACEEYKTNFSSSISTNG 183


>gi|161525575|ref|YP_001580587.1| coproporphyrinogen III oxidase [Burkholderia multivorans ATCC
           17616]
 gi|189349697|ref|YP_001945325.1| coproporphyrinogen III oxidase [Burkholderia multivorans ATCC
           17616]
 gi|160343004|gb|ABX16090.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
           multivorans ATCC 17616]
 gi|189333719|dbj|BAG42789.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
           multivorans ATCC 17616]
          Length = 404

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 17/106 (16%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87
            L           +C +CD         KG R+   +  D +             ++   
Sbjct: 28  PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPETEYLDALRADLEHALPLVWGRQVHT 84

Query: 88  CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124
             + GG P L     L + L             EI +E N GT E 
Sbjct: 85  VFIGGGTPSLLSAAGLDRLLSDVRALLPLDADAEITLEANPGTFEA 130


>gi|50083685|ref|YP_045195.1| putative oxidase; putative coproporphyrinogen III oxidase
           [Acinetobacter sp. ADP1]
 gi|49529661|emb|CAG67373.1| putative oxidase; putative coproporphyrinogen III oxidase
           [Acinetobacter sp. ADP1]
          Length = 385

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 14/113 (12%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIE----EQWITGEKEGRY 87
            L           +C +CD +      G          L  L+     +      ++   
Sbjct: 11  PLSLYIHMPWCVRKCPYCDFNSHAVPNGALSLELEQQYLQALVADFETQVKFVQGRKIHS 70

Query: 88  CVLTGGEPLL------QVDVPLIQALNK--RGFEIAVETN-GTIEPPQGIDWI 131
             + GG P L      Q     I+AL    +  EI +E N GT+E     D++
Sbjct: 71  VFIGGGTPSLISAQGYQWLFEKIRALVDFEQDCEITLEANPGTVEHDPFADYL 123


>gi|309776266|ref|ZP_07671256.1| pyruvate formate-lyase-activating enzyme [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308915985|gb|EFP61735.1| pyruvate formate-lyase-activating enzyme [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 308

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118
           +G R +V ++ D+  +     E+ G    ++GGE + Q      L+  L KR    A+ET
Sbjct: 102 EGERTSVQKIIDICLQDKDFYEESGGGVTISGGEGMSQPAFLETLVIQLQKRQIHTAIET 161

Query: 119 NG 120
            G
Sbjct: 162 TG 163


>gi|282860187|ref|ZP_06269262.1| radical SAM domain protein [Prevotella bivia JCVIHMP010]
 gi|282587076|gb|EFB92306.1| radical SAM domain protein [Prevotella bivia JCVIHMP010]
          Length = 416

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 9/89 (10%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLI 104
           C +C        G K      + + D I    +  +++    +  GGEPLL +     + 
Sbjct: 95  CSYC-----FEAGNKRKINMTEDVEDAIVRFLVKNKEKKISIIWFGGEPLLNIRTIENIT 149

Query: 105 QALNKR--GFEIAVETNGTIEPPQGIDWI 131
           + L      +  ++ TNG++     ID +
Sbjct: 150 KKLEMEHVNYSSSMITNGSLLNSHAIDIL 178


>gi|168822662|ref|ZP_02834662.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|194472894|ref|ZP_03078878.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205358772|ref|ZP_02658959.2| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194459258|gb|EDX48097.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205332070|gb|EDZ18834.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205340950|gb|EDZ27714.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|320088378|emb|CBY98138.1| Anaerobic sulfatase-maturating enzyme homolog aslB AnSME homolog
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 431

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GC++ +       +  C +C   + + +  +  K  R + + L   I +       +  
Sbjct: 4   AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63

Query: 87  YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120
                GGEP + + +P    + AL ++   G +I  A++TNG
Sbjct: 64  DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 104


>gi|84490112|ref|YP_448344.1| glycyl radical activating protein [Methanosphaera stadtmanae DSM
           3091]
 gi|84373431|gb|ABC57701.1| predicted glycyl radical activating enzyme [Methanosphaera
           stadtmanae DSM 3091]
          Length = 238

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 27/132 (20%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GC+L           +C++C    + ++     R++++++ + I++     +      V+
Sbjct: 24  GCDL-----------RCKYCHNPQL-LKNESLSRWDIEEVEEEIDKNVDFIDA----IVI 67

Query: 91  TGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDLKI 143
           +GGE LL +DV    IQ   +    I ++TNG            +D++ +  KA  D   
Sbjct: 68  SGGEALLHIDVVKHYIQKAKEFDLLIKLDTNGLHPENLNQIIDDLDYVAIDIKAPLDKYY 127

Query: 144 KGGQELKLVFPQ 155
           K       V+P 
Sbjct: 128 KISD----VYPN 135


>gi|330815845|ref|YP_004359550.1| Putative oxygen-independent coproporphyrinogen III oxidase
           [Burkholderia gladioli BSR3]
 gi|327368238|gb|AEA59594.1| Putative oxygen-independent coproporphyrinogen III oxidase
           [Burkholderia gladioli BSR3]
          Length = 409

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 17/106 (16%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87
            L           +C +CD         KG R+  +   D +             ++   
Sbjct: 28  PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPEEAYLDALRADLEQALPFVWGRQVHT 84

Query: 88  CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124
             + GG P L     L + L             EI +E N GT E 
Sbjct: 85  IFIGGGTPSLLSAAGLDRLLSDVRALLPLDADAEITLEANPGTFEA 130


>gi|291523714|emb|CBK89301.1| Predicted Fe-S oxidoreductases [Eubacterium rectale DSM 17629]
          Length = 384

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 30/115 (26%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL--ADLIEEQWITGEKEGRYC 88
           GCN+           +C+ C        G+       D+L  ++ +E      +   +  
Sbjct: 14  GCNM-----------RCKHC--------GSSCAEALPDELNTSEALEVCDQLKDLGLKVI 54

Query: 89  VLTGGEPLLQVDVPLI-QALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134
            L+GGEP  + D  +I + L   G   ++ TNG              GI  +C+S
Sbjct: 55  TLSGGEPTTRSDWHIIAKRLVDNGIITSIITNGWLIDENFIHNAITSGIRSVCLS 109


>gi|238922810|ref|YP_002936323.1| pyrroloquinoline quinone biosynthesis protein PqqE [Eubacterium
           rectale ATCC 33656]
 gi|238874482|gb|ACR74189.1| pyrroloquinoline quinone biosynthesis protein PqqE [Eubacterium
           rectale ATCC 33656]
 gi|291528824|emb|CBK94410.1| Predicted Fe-S oxidoreductases [Eubacterium rectale M104/1]
          Length = 336

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 30/115 (26%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL--ADLIEEQWITGEKEGRYC 88
           GCN+           +C+ C        G+       D+L  ++ +E      +   +  
Sbjct: 14  GCNM-----------RCKHC--------GSSCAEALPDELNTSEALEVCDQLKDLGLKVI 54

Query: 89  VLTGGEPLLQVDVPLI-QALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134
            L+GGEP  + D  +I + L   G   ++ TNG              GI  +C+S
Sbjct: 55  TLSGGEPTTRSDWHIIAKRLVDNGIITSIITNGWLIDENFIHNAITSGIRSVCLS 109


>gi|228471002|ref|ZP_04055847.1| coenzyme PQQ synthesis protein E [Porphyromonas uenonis 60-3]
 gi|228307399|gb|EEK16413.1| coenzyme PQQ synthesis protein E [Porphyromonas uenonis 60-3]
          Length = 379

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 14/90 (15%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL  G       + CR           +     +V     +I+      +      + T
Sbjct: 51  CNLHCGHC----GSDCRV---------ESGVDELSVADFIHIIDGLTPHVDPNKLLVIFT 97

Query: 92  GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
           GGE L+ Q       AL +RG+   + TNG
Sbjct: 98  GGEALVRQDIEEAGLALYRRGYPWGIVTNG 127


>gi|254512415|ref|ZP_05124482.1| radical SAM [Rhodobacteraceae bacterium KLH11]
 gi|221536126|gb|EEE39114.1| radical SAM [Rhodobacteraceae bacterium KLH11]
          Length = 436

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 25/109 (22%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD-QLADLIEEQWITGEKEGRYC 88
             CNL            C +C   +       G   N++ ++A    ++ +   + G   
Sbjct: 80  QKCNL-----------ACTYC---YAAGGEFGGPARNMEWEVAKASVDRLVAEAEPGVRI 125

Query: 89  VLT--GGEPLLQVDV------PLIQALNKRGFEI--AVETNGTIEPPQG 127
            L   GGEPL+  D+        ++     G  +  ++ TNGT+  P+ 
Sbjct: 126 NLAFLGGEPLINRDLVQRTTEYAVEQAQANGLSVGFSITTNGTLLRPED 174


>gi|195977849|ref|YP_002123093.1| putative transcriptional regulator [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974554|gb|ACG62080.1| putative transcriptional regulator [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 431

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 13/84 (15%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-------- 97
           +C++C   +   +         + + +  E+    G+ E       GGEPLL        
Sbjct: 91  RCKYC---YEKFENISMTIEVEEAIVEFAEKLLSEGKFERFSVQWFGGEPLLGYRTIVRL 147

Query: 98  -QVDVPLIQALNKRGFEIAVETNG 120
            +  + L       G+   + TNG
Sbjct: 148 SEKFLELCSR-YDIGYFSGITTNG 170


>gi|197263100|ref|ZP_03163174.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197241355|gb|EDY23975.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
          Length = 431

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GC++ +       +  C +C   + + +  +  K  R + + L   I +       +  
Sbjct: 4   AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63

Query: 87  YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120
                GGEP + + +P    + AL ++   G +I  A++TNG
Sbjct: 64  DFAWQGGEPTM-MGLPFFRRVVALCEKYSDGRKITHALQTNG 104


>gi|157963910|ref|YP_001503944.1| molybdenum cofactor biosynthesis protein A [Shewanella pealeana
           ATCC 700345]
 gi|157848910|gb|ABV89409.1| molybdenum cofactor biosynthesis protein A [Shewanella pealeana
           ATCC 700345]
          Length = 328

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C    +       GR +V  L +L        E   +   LTGGEPL++ D
Sbjct: 21  DRCDFRCVYC----MSEDPCFLGREHVLSLEELAWVAQAFTELGVKKIRLTGGEPLVRTD 76

Query: 101 VP-LIQAL-NKRGF-EIAVETNGT 121
              L++ L    G  E+++ TNG+
Sbjct: 77  CDQLVKLLGKLPGLEELSMTTNGS 100


>gi|194449035|ref|YP_002047976.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|205359382|ref|ZP_02669589.2| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|6960236|gb|AAF33426.1| similar to E. coli putative arylsulfatase regulator (ASLB)
           (SP:P25550) and hypothetical protein (YDEM) (SP:P76134)
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|194407339|gb|ACF67558.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|205336490|gb|EDZ23254.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|312915085|dbj|BAJ39059.1| putative arylsulfatase regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
          Length = 431

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GC++ +       +  C +C   + + +  +  K  R + + L   I +       +  
Sbjct: 4   AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63

Query: 87  YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120
                GGEP + + +P    + AL ++   G +I  A++TNG
Sbjct: 64  DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 104


>gi|146296011|ref|YP_001179782.1| radical SAM domain-containing protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409587|gb|ABP66591.1| GTP cyclohydrolase subunit MoaA [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 308

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 8/112 (7%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR +  C++C T        K    + D++  +I      G K+ R+   TGGEP L+ D
Sbjct: 18  DRCNFFCKYCRTKEACEIENKD--LSKDEIFRIISVFKKLGIKKLRF---TGGEPFLRDD 72

Query: 101 V-PLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
           +  +I+  +  G + I V TNG ++  + I+ I  S     ++ +    + K
Sbjct: 73  IFDIIEFADNIGIKNINVTTNGYLD-EEKIEKIAKSSLLSINISLDTLDKQK 123


>gi|326801125|ref|YP_004318944.1| molybdenum cofactor biosynthesis protein A [Sphingobacterium sp.
           21]
 gi|326551889|gb|ADZ80274.1| molybdenum cofactor biosynthesis protein A [Sphingobacterium sp.
           21]
          Length = 326

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C         T           ++I   ++          LTGGEP+++ D
Sbjct: 19  DRCNLRCFYC-MPEESYDFTPMKHLMSATELEIIAGHFVRLGVNK--IRLTGGEPMVRSD 75

Query: 101 V-PLIQALNKRGFEIAVETN 119
              +I  L K    + + TN
Sbjct: 76  FGDIILRLAKLPVSLHITTN 95


>gi|321225483|gb|EFX50540.1| Putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
          Length = 431

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GC++ +       +  C +C   + + +  +  K  R + + L   I +       +  
Sbjct: 4   AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63

Query: 87  YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120
                GGEP + + +P    + AL ++   G +I  A++TNG
Sbjct: 64  DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 104


>gi|307595591|ref|YP_003901908.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM
           14429]
 gi|307550792|gb|ADN50857.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 353

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           LW        + +C +C   F          Y+V++L  LIE             +  GG
Sbjct: 2   LWLLFTTGVCNLKCSYCGGSFEPHVVPWRVTYDVNKLKRLIE------GDADATVIFYGG 55

Query: 94  EPLLQVDVP--LIQALNKRGFEIAVETNGTIEPPQGIDW 130
           EPLL        +  +  R F I   TNGT+      D+
Sbjct: 56  EPLLNPRFIMWAMDNIRARRFGIQ--TNGTLVNLLPRDY 92


>gi|269137629|ref|YP_003294329.1| coproporphyrinogen III oxidase and related Fe-S oxidoreductase
           [Edwardsiella tarda EIB202]
 gi|267983289|gb|ACY83118.1| coproporphyrinogen III oxidase and related Fe-S oxidoreductase
           [Edwardsiella tarda EIB202]
 gi|304557694|gb|ADM40358.1| Coproporphyrinogen III oxidase, oxygen-independent [Edwardsiella
           tarda FL6-60]
          Length = 376

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 10/102 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ-LADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +    +G    +  VD  LADL +E      +      + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHAQKGEIPQQAYVDHLLADLDQELPRVAGRPLSTLFIG 65

Query: 92  GGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124
           GG P L     L + L             EI +E N GT+E 
Sbjct: 66  GGTPSLLSGEALQRLLDGVRARLPLAADAEITLEANPGTVEA 107


>gi|256828602|ref|YP_003157330.1| Radical SAM domain protein [Desulfomicrobium baculatum DSM 4028]
 gi|256577778|gb|ACU88914.1| Radical SAM domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 296

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 24/99 (24%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL--ADLIEEQWITGEKEGRYCV 89
           CNL           +C FC        GT     ++D      ++ +      +   + +
Sbjct: 20  CNL-----------RCDFC-------AGTTRRPASMDPAFFEQVLRQIAPLTGQVCLHVL 61

Query: 90  LTGGEPLLQVDVPLIQALNK-RGFEIAVETNGTIEPPQG 127
              GEPLL      I  L    G ++ + TN T+ P + 
Sbjct: 62  ---GEPLLHPHFGTIMDLCANAGIQVNLTTNATLLPEKS 97


>gi|204930326|ref|ZP_03221303.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|204320730|gb|EDZ05932.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|322613042|gb|EFY09993.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322617370|gb|EFY14270.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322625638|gb|EFY22460.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322657597|gb|EFY53867.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|323210724|gb|EFZ95600.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323215892|gb|EGA00625.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323227597|gb|EGA11753.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323250343|gb|EGA34229.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323259752|gb|EGA43385.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323268411|gb|EGA51883.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 431

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GC++ +       +  C +C   + + +  +  K  R + + L   I +       +  
Sbjct: 4   AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63

Query: 87  YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120
                GGEP + + +P    + AL ++   G +I  A++TNG
Sbjct: 64  DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 104


>gi|197251257|ref|YP_002148892.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197214960|gb|ACH52357.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 431

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GC++ +       +  C +C   + + +  +  K  R + + L   I +       +  
Sbjct: 4   AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63

Query: 87  YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120
                GGEP + + +P    + AL ++   G +I  A++TNG
Sbjct: 64  DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 104


>gi|167553398|ref|ZP_02347147.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205322153|gb|EDZ09992.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 431

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GC++ +       +  C +C   + + +  +  K  R + + L   I +       +  
Sbjct: 4   AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63

Query: 87  YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120
                GGEP + + +P    + AL ++   G +I  A++TNG
Sbjct: 64  DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 104


>gi|161617089|ref|YP_001591054.1| hypothetical protein SPAB_04922 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161366453|gb|ABX70221.1| hypothetical protein SPAB_04922 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 431

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GC++ +       +  C +C   + + +  +  K  R + + L   I +       +  
Sbjct: 4   AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63

Query: 87  YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120
                GGEP + + +P    + AL ++   G +I  A++TNG
Sbjct: 64  DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 104


>gi|119918298|ref|XP_609956.3| PREDICTED: pleckstrin and Sec7 domain containing 2-like [Bos
           taurus]
 gi|297491313|ref|XP_002698790.1| PREDICTED: pleckstrin and Sec7 domain containing 2-like [Bos
           taurus]
 gi|296472305|gb|DAA14420.1| pleckstrin and Sec7 domain containing 2-like [Bos taurus]
          Length = 1203

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 17/72 (23%)

Query: 77  QWITGEKEGRYCVLTGG--------------EPLLQVDVPLIQALNKRGFEIAVETNGTI 122
                 +      +TGG              EP LQ    LI AL      IA   +GT 
Sbjct: 275 AQPLAGRHSGPVTVTGGPKDVRGLPSQSHFKEPSLQPIDSLISALKATEARIA---SGTS 331

Query: 123 EPPQGIDWICVS 134
           +  + +D   VS
Sbjct: 332 QATKVLDGAAVS 343


>gi|29832258|ref|NP_826892.1| hypothetical protein SAV_5715 [Streptomyces avermitilis MA-4680]
 gi|29609377|dbj|BAC73427.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 723

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 18/99 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL              +        +        +D++A  +    +  + E    +L 
Sbjct: 21  CNLACDHCYVYEHEDQSW------QARPVLIAEETLDKVAHRLAAYTVDRKLESVSVILH 74

Query: 92  GGEPLL----------QVDVPLIQALNKRGFEIAVETNG 120
           GGEPLL               ++  L      I   TNG
Sbjct: 75  GGEPLLVGPTRLRNICAQLRSVLDPLTTLDLRIH--TNG 111


>gi|75675412|ref|YP_317833.1| molybdenum cofactor biosynthesis protein A [Nitrobacter
           winogradskyi Nb-255]
 gi|123745726|sp|Q3STB0|MOAA_NITWN RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|74420282|gb|ABA04481.1| GTP cyclohydrolase subunit MoaA [Nitrobacter winogradskyi Nb-255]
          Length = 343

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+     K     +++L  L       G ++ R   LTGGEPL+
Sbjct: 33  DRCDLRCFYCMSEDMTFL----PKADLLTLEELDRLCSAFIAKGVRKLR---LTGGEPLV 85

Query: 98  QVDV-PLIQALNKR---G--FEIAVETNGT 121
           + +V  LI++L++    G   E+ + TNG+
Sbjct: 86  RRNVMSLIRSLSRHLQSGALKELTLTTNGS 115


>gi|134298390|ref|YP_001111886.1| radical SAM domain-containing protein [Desulfotomaculum reducens
           MI-1]
 gi|134051090|gb|ABO49061.1| Radical SAM domain protein [Desulfotomaculum reducens MI-1]
          Length = 343

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           ++ + +CR C ++      +     +++QL  LI++ +  G K      ++GGEP L  D
Sbjct: 16  NKCALKCRHCSSE---ASPSGQEHISINQLVALIDQAYQMGLKSF---TISGGEPFLHPD 69

Query: 101 V 101
           +
Sbjct: 70  I 70


>gi|331695126|ref|YP_004331365.1| Radical SAM domain-containing protein [Pseudonocardia dioxanivorans
           CB1190]
 gi|326949815|gb|AEA23512.1| Radical SAM domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 542

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 13/103 (12%)

Query: 31  GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G   +     C             C   F        G     +  + + + ++
Sbjct: 84  GCPSDCGLCPEHKQHACLGIIEVNTNCNLDCPICFADSGHQPDGYSITLEQCERMLDVFV 143

Query: 80  TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNG 120
             E E    + +GGEP +    +  I     +    + + TNG
Sbjct: 144 ESEGEAEVVMFSGGEPTIHKHILDFIDLAQAKPIRNVTLNTNG 186


>gi|298706473|emb|CBJ29460.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 369

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLT 91
           N       +R + +C +C     G+      +  N  ++  L       G  + R   LT
Sbjct: 50  NYLRISLTERCNLRCVYC-MPEDGVDLQPQSKMINQQEILRLASMFVDAGVDKIR---LT 105

Query: 92  GGEPLLQVDVP-LIQALNK-RGFE-IAVETNG 120
           GGEPL++ D+P +++AL+   G   + V TNG
Sbjct: 106 GGEPLVRKDLPDIVRALSSLEGVRNVGVTTNG 137


>gi|222528908|ref|YP_002572790.1| radical SAM domain-containing protein [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455755|gb|ACM60017.1| Radical SAM domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 368

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 42  RLSAQCR-FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           R++ +C  FC   +              ++  LI+    + E   +    TGGEP  + D
Sbjct: 25  RVTKRCNAFCKHCYGNSGEPFNNELTTREIKKLID--VYSDEFGVKKIFFTGGEPFARGD 82

Query: 101 V-PLIQALNKRGFEIAVETNGTI 122
           +  ++Q    +  EI + TNG++
Sbjct: 83  IVEILQYAYYKNMEILISTNGSL 105


>gi|194443254|ref|YP_002043195.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194401917|gb|ACF62139.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 431

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GC++ +       +  C +C   + + +  +  K  R + + L   I +       +  
Sbjct: 4   AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63

Query: 87  YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120
                GGEP + + +P    + AL ++   G +I  A++TNG
Sbjct: 64  DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 104


>gi|94967207|ref|YP_589255.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549257|gb|ABF39181.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 350

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 14/110 (12%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQL-----ADLIEEQW-ITGEKEGRYCVLTGGEPLL 97
             +C  C   +       GG  N+  L      DL+     +  E +  +  + GG+PL+
Sbjct: 30  PLRCPGC---YAYEDNHLGGDTNLRSLTDYKGDDLVRRVLSLVDEHKPLHLSIVGGDPLV 86

Query: 98  -QVDVPLIQ-ALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
              ++ ++   L +RG  + V T+     P    W  + P+    + I G
Sbjct: 87  RYRELEIVLPQLAERGIHVQVVTSAFRPIPTQ--WATL-PRLRMTVSIDG 133


>gi|1016358|emb|CAA58794.1| pyruvate formate lyase activating protein homologue [Thermococcus
           litoralis DSM 5473]
          Length = 350

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 19/81 (23%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            VF  FSGCN            +C FC  ++   Q   G RY+  ++A  I   +  G K
Sbjct: 136 TVF--FSGCNF-----------RCAFC-QNWDISQYRVGLRYSPKEMAVKIAVAYAEGAK 181

Query: 84  EGRYCVLTGGEPLLQVDVPLI 104
              +    GGEP    ++P I
Sbjct: 182 NVNFV---GGEPT--PNLPFI 197


>gi|320450824|ref|YP_004202920.1| coenzyme PQQ synthesis protein PqqE [Thermus scotoductus SA-01]
 gi|320150993|gb|ADW22371.1| coenzyme PQQ synthesis protein PqqE [Thermus scotoductus SA-01]
          Length = 375

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 5/72 (6%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LI 104
            CR C      +     G  + ++   LIEE  +   +     +LTGG+PL + D+  LI
Sbjct: 24  ACRHC--RASAMPHPLPGELSTEEGLGLIEE--VATYRPKPLLLLTGGDPLARPDLLFLI 79

Query: 105 QALNKRGFEIAV 116
           Q   + G ++ +
Sbjct: 80  QRARELGLKVGL 91


>gi|315647297|ref|ZP_07900410.1| Radical SAM domain protein [Paenibacillus vortex V453]
 gi|315277499|gb|EFU40828.1| Radical SAM domain protein [Paenibacillus vortex V453]
          Length = 391

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 32/102 (31%), Gaps = 11/102 (10%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GCNL      +                +  K    ++  +  L+ E      +      L
Sbjct: 52  GCNLRCKHCFEWNPDGFH-----HGFAKEEKKDEIDIPVVEKLLAETRERKSR----VFL 102

Query: 91  TGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
            GGEPL       L + L K      + TN  I   Q +D I
Sbjct: 103 WGGEPLFYSKFDELAELLAKEDRYTTICTN-AILIEQKLDSI 143


>gi|262372689|ref|ZP_06065968.1| molybdenum cofactor biosynthesis protein A [Acinetobacter junii
           SH205]
 gi|262312714|gb|EEY93799.1| molybdenum cofactor biosynthesis protein A [Acinetobacter junii
           SH205]
          Length = 345

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 16/106 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QV 99
           DR + +C +C    +        + ++     L+       ++      +TGGEPL+ Q 
Sbjct: 33  DRCNFKCVYC----MPEHPEWMKKQDLLSFESLLVFCTYMVKQGIENIRITGGEPLMRQG 88

Query: 100 DVPLI---QALNKRGF-EIAVETNGTIEPP-------QGIDWICVS 134
            V  I   Q L K G   I++ TNG             G+D + +S
Sbjct: 89  VVHFIRDLQQLKKIGLKRISMTTNGHYLAKYADQLKAAGLDDLNIS 134


>gi|85859249|ref|YP_461451.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB]
 gi|85722340|gb|ABC77283.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB]
          Length = 330

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 8/82 (9%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           D  +  C FC   ++G +   G R    D++   I+      +        TGGE  L  
Sbjct: 17  DACNMNCAFC---YLGGETRLGNRFMPDDEVLRWID---WAVDNSIPAIRFTGGEATLHP 70

Query: 100 DVP-LIQALNKRGFEIAVETNG 120
            V       + RG  I + TNG
Sbjct: 71  QVEMFCYYAHLRGRYIVLNTNG 92


>gi|242398860|ref|YP_002994284.1| molybdenum cofactor biosynthesis protein [Thermococcus sibiricus MM
           739]
 gi|242265253|gb|ACS89935.1| molybdenum cofactor biosynthesis protein [Thermococcus sibiricus MM
           739]
          Length = 586

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           NL +    +R +  C +C   F   +G       ++Q+  ++                TG
Sbjct: 138 NLLNIVLTNRCNLSCWYC--FFYHKEGQPVYEPTLEQIRMMLRNAKSEEPIGANAVQFTG 195

Query: 93  GEPLLQVD 100
           GEP L+ D
Sbjct: 196 GEPSLRDD 203


>gi|206580011|ref|YP_002237132.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae 342]
 gi|288934092|ref|YP_003438151.1| radical SAM enzyme, Cfr family [Klebsiella variicola At-22]
 gi|290508289|ref|ZP_06547660.1| cfr family radical SAM enzyme [Klebsiella sp. 1_1_55]
 gi|254807185|sp|B5XNL2|RLMN_KLEP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|206569069|gb|ACI10845.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae 342]
 gi|288888821|gb|ADC57139.1| radical SAM enzyme, Cfr family [Klebsiella variicola At-22]
 gi|289777683|gb|EFD85680.1| cfr family radical SAM enzyme [Klebsiella sp. 1_1_55]
          Length = 388

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++     TG +     V+ G
Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKTTGVRPITNVVMMG 181

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 182 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232


>gi|163749560|ref|ZP_02156807.1| hypothetical protein KT99_16109 [Shewanella benthica KT99]
 gi|161330670|gb|EDQ01607.1| hypothetical protein KT99_16109 [Shewanella benthica KT99]
          Length = 373

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 57/177 (32%), Gaps = 32/177 (18%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL-------ADLIEEQWITGEKEGRYC 88
               Q   + +C FC T   G          V ++       AD I     TGE+     
Sbjct: 107 CVSSQVGCALECTFCSTAQQGFN----RNLTVSEIIGQVWRVADFIGFIKKTGERPITNV 162

Query: 89  VLTG-GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICVSPKAG 138
           V+ G GEPLL +   +P +   L+  GF      + + T+G +     + D I V     
Sbjct: 163 VMMGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDV----A 218

Query: 139 CDLKIKGG-QELKLV-FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
             + I     EL+ V  P     P         R+               + + Y  
Sbjct: 219 LAVSIHAANDELRDVLVPVNKKYPLQEFLASIRRYI-----AKSNANRGRVTVEYVM 270


>gi|152971378|ref|YP_001336487.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238895973|ref|YP_002920709.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
           pneumoniae NTUH-K2044]
 gi|262040254|ref|ZP_06013505.1| cfr family radical SAM enzyme [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330007776|ref|ZP_08306073.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. MS 92-3]
 gi|205829779|sp|A6TCD6|RLMN_KLEP7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|150956227|gb|ABR78257.1| putative pyruvate formate lyase activating enzyme 2 [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238548291|dbj|BAH64642.1| putative pyruvate formate lyase activating enzyme 2 [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259042363|gb|EEW43383.1| cfr family radical SAM enzyme [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328535320|gb|EGF61805.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. MS 92-3]
          Length = 388

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 13/111 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTG 92
               Q   + +C+FC T   G          + Q+   A ++     TG +     V+ G
Sbjct: 122 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKTTGVRPITNVVMMG 181

Query: 93  -GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI-DWICV 133
            GEPLL ++  VP ++  L+  GF      + + T+G +     + D I V
Sbjct: 182 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDV 232


>gi|83999861|emb|CAH60161.1| putative epimerase [Streptomyces tenjimariensis]
          Length = 327

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 19/99 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL         S +              +  R   D++   +    +   +  R+   +
Sbjct: 29  CNLSCAHCIVESSPR--------------RTERLTTDEVRTALS---VGRGRGKRHVTFS 71

Query: 92  GGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGI 128
           GGE  L       +I      G+ + VE+NG     + I
Sbjct: 72  GGEVFLFPAQMCEVIAFARGLGYVVDVESNGFWARSEKI 110


>gi|283779517|ref|YP_003370272.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Pirellula staleyi DSM 6068]
 gi|283437970|gb|ADB16412.1| hopanoid biosynthesis associated radical SAM protein HpnH
           [Pirellula staleyi DSM 6068]
          Length = 388

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 79  ITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKA 137
              E       + GGEPLL   +  ++  L  R   + + TN  I+    +D    S   
Sbjct: 67  AAEECGAPVVSIPGGEPLLHPQIGEIVAGLVARKKYVYLCTN-AIKLIDSLDKFKPSKYL 125

Query: 138 GCDLKIKGGQE 148
              + + G +E
Sbjct: 126 AFSVHLDGPRE 136


>gi|256839685|ref|ZP_05545194.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp.
           D13]
 gi|256738615|gb|EEU51940.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp.
           D13]
          Length = 301

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 36  SGREQDRLSAQCR-FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           + R   R   +C   C T         G  Y++D++   IE++ +  ++        GGE
Sbjct: 76  TDRSLCRTCGRCAEVCPT---LAMEMSGREYSIDEVMREIEKETVFMDRSEGGVTFCGGE 132

Query: 95  PLLQV--DVPLIQALNKRGFEIAVET 118
           PL      V L+      G   AV+T
Sbjct: 133 PLSHPSDLVALLDRCGALGIHRAVDT 158


>gi|289578772|ref|YP_003477399.1| radical SAM protein [Thermoanaerobacter italicus Ab9]
 gi|289528485|gb|ADD02837.1| Radical SAM domain protein [Thermoanaerobacter italicus Ab9]
          Length = 298

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 21/95 (22%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           AVF  FSGCNL           +C FC  ++   Q   G   +V++LA +       G  
Sbjct: 54  AVF--FSGCNL-----------KCVFC-QNYEISQYQFGKFISVEELAQIFLNLQKQGAH 99

Query: 84  EGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAV 116
                      P + V +    I    ++G  I +
Sbjct: 100 NINLVT-----PTIHVFLIKEAILLAKRQGLHIPI 129


>gi|210621579|ref|ZP_03292715.1| hypothetical protein CLOHIR_00660 [Clostridium hiranonis DSM 13275]
 gi|210154702|gb|EEA85708.1| hypothetical protein CLOHIR_00660 [Clostridium hiranonis DSM 13275]
          Length = 183

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 22/97 (22%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWI 79
           G  AV     GC              C  C         T GG+  +  ++ D I+ + +
Sbjct: 19  GLRAV-VWTQGC-----------KHNCIGC--HNPQTHSTMGGKVVDTSEIIDKIKSKKL 64

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEI 114
                     L+GGEP LQ +    +  A+ + G  +
Sbjct: 65  QSG-----VTLSGGEPFLQPEAVGEIASAVKEMGMNV 96


>gi|168263142|ref|ZP_02685115.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|205348268|gb|EDZ34899.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
          Length = 431

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GC++ +       +  C +C   + + +  +  K  R + + L   I +       +  
Sbjct: 4   AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63

Query: 87  YCVLTGGEPLLQVDVPL---IQALNKR---GFEI--AVETNG 120
                GGEP + + +P    + AL ++   G +I  A++TNG
Sbjct: 64  DFAWQGGEPTM-MGLPFFRRVVALCEKYGDGRKITHALQTNG 104


>gi|304315179|ref|YP_003850326.1| oxidoreductase [Methanothermobacter marburgensis str. Marburg]
 gi|302588638|gb|ADL59013.1| predicted oxidoreductase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 303

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 93  GEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           GEPLL  D+  L+   +KR F   + TNG
Sbjct: 134 GEPLLYPDMDGLLAEFHKRNFTTFLVTNG 162


>gi|237729886|ref|ZP_04560367.1| coproporphyrinogen III oxidase [Citrobacter sp. 30_2]
 gi|226908492|gb|EEH94410.1| coproporphyrinogen III oxidase [Citrobacter sp. 30_2]
          Length = 382

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L+DL  E      +E +   + 
Sbjct: 10  PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDTEVAHARGREVKTIFIG 69

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L              EI +E N GT+E  + +D+
Sbjct: 70  GGTPSL-LSGPAMQTLLDGVRARLNLAEDAEITMEANPGTVEADRFVDY 117


>gi|197117742|ref|YP_002138169.1| pyranopterin triphosphate synthase [Geobacter bemidjiensis Bem]
 gi|197087102|gb|ACH38373.1| pyranopterin triphosphate synthase [Geobacter bemidjiensis Bem]
          Length = 326

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 8/92 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLT 91
           N       DR + +C +C     G++  +     + ++L  +       G ++ R   +T
Sbjct: 12  NYLRLSVTDRCNMRCSYC-MPAQGVEKLEHKEMLSYEELYRVAGACIAQGIEKIR---VT 67

Query: 92  GGEPLLQVDV-PLIQALNK-RGF-EIAVETNG 120
           GGEPL++  + P ++ L +  G  E+ + TNG
Sbjct: 68  GGEPLVRKGIVPFLERLARVPGLKELVLTTNG 99


>gi|291454104|ref|ZP_06593494.1| radical SAM domain-containing protein [Streptomyces albus J1074]
 gi|291357053|gb|EFE83955.1| radical SAM domain-containing protein [Streptomyces albus J1074]
          Length = 461

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 35/106 (33%), Gaps = 28/106 (26%)

Query: 32  CNLWSGREQDRLSAQCRFC------DTDFVGIQGTKGGRYNVDQL-ADLIEEQWITGEKE 84
           CNL            CR+C      DT              V  L AD I E        
Sbjct: 78  CNL-----------ACRYCYLYEGPDTG--WRDRPAAASDAVLALTADRIAEHAAAHRLP 124

Query: 85  GRYCVLTGGEPLLQ--VDVPLIQALNKR------GFEIAVETNGTI 122
               VL GGEPLL     +    AL +R         + ++TN T+
Sbjct: 125 AVSLVLHGGEPLLAGTDRLAAFAALVRRRVPAPTRVRVTLQTNATL 170


>gi|239982259|ref|ZP_04704783.1| hypothetical protein SalbJ_22704 [Streptomyces albus J1074]
          Length = 390

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 35/106 (33%), Gaps = 28/106 (26%)

Query: 32  CNLWSGREQDRLSAQCRFC------DTDFVGIQGTKGGRYNVDQL-ADLIEEQWITGEKE 84
           CNL            CR+C      DT              V  L AD I E        
Sbjct: 7   CNL-----------ACRYCYLYEGPDTG--WRDRPAAASDAVLALTADRIAEHAAAHRLP 53

Query: 85  GRYCVLTGGEPLLQ--VDVPLIQALNKR------GFEIAVETNGTI 122
               VL GGEPLL     +    AL +R         + ++TN T+
Sbjct: 54  AVSLVLHGGEPLLAGTDRLAAFAALVRRRVPAPTRVRVTLQTNATL 99


>gi|156554974|ref|XP_001602493.1| PREDICTED: similar to CG33048-PC [Nasonia vitripennis]
          Length = 572

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 26/114 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C +C     G++ +K       D++  + E     G  + R   L
Sbjct: 63  CNL-----------RCTYC-MPANGVELSKKEDILKTDEIIKIAELFINEGVNKIR---L 107

Query: 91  TGGEPLLQVD-VPLIQALNK-RGFE-IAVETNG---TIEPP----QGIDWICVS 134
           TGGEP ++ D + ++  L   +G E +A+ TNG   T + P     G+D + +S
Sbjct: 108 TGGEPTVRKDIIDIVAQLKSIKGLETLAMTTNGITLTRQLPKLQRAGLDLLNIS 161


>gi|124267188|ref|YP_001021192.1| hypothetical protein Mpe_A1999 [Methylibium petroleiphilum PM1]
 gi|205829632|sp|A2SHB8|RLMN_METPP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|124259963|gb|ABM94957.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 394

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 14/101 (13%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQ---GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
               Q   +  CRFC T   G      T      +      +  +  T E+     V+ G
Sbjct: 105 CISSQAGCAVGCRFCSTGHQGFSRNLSTGEIVAQLWHAEHQLRARLGTTERVISNVVMMG 164

Query: 93  -GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123
            GEPL Q    L+ AL       G+      + V T+G + 
Sbjct: 165 MGEPL-QNYAALLPALRVMLDDHGYGLSRRRVTVSTSGVVP 204


>gi|321447815|gb|EFX61189.1| hypothetical protein DAPPUDRAFT_305942 [Daphnia pulex]
          Length = 158

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 12/89 (13%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           N       +R + +C++C     G+   TK       ++  +       G  + R   LT
Sbjct: 61  NYLRISLTERCNLRCQYC-MPAGGVDLTTKDKLLTTSEIIKIASAFVEEGVDKIR---LT 116

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETN 119
           GGEP ++ D+  L+      G     ET+
Sbjct: 117 GGEPSIRPDIVELV------GIVTYCETS 139


>gi|317490251|ref|ZP_07948739.1| radical SAM superfamily protein [Eggerthella sp. 1_3_56FAA]
 gi|325833449|ref|ZP_08165898.1| radical SAM domain protein [Eggerthella sp. HGA1]
 gi|316910745|gb|EFV32366.1| radical SAM superfamily protein [Eggerthella sp. 1_3_56FAA]
 gi|325485373|gb|EGC87842.1| radical SAM domain protein [Eggerthella sp. HGA1]
          Length = 415

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 37/116 (31%), Gaps = 26/116 (22%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              CNL           + R  D                  LAD+               
Sbjct: 84  TQRCNLACAGCYSLDEHRNRLAD----------------APLADMKRAVEGLAAAGLSQL 127

Query: 89  VLTGGEPLLQVDVPLI--QALNKRGF-EIAVETNGTI-------EPPQGIDWICVS 134
           +++GGEPLL+ D+P I   A    G   + V +NGT             +D + VS
Sbjct: 128 IISGGEPLLREDLPDIVEHAKRACGIASVTVLSNGTRMTEEALERLAPNVDCVSVS 183


>gi|302878328|ref|YP_003846892.1| Radical SAM domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302581117|gb|ADL55128.1| Radical SAM domain protein [Gallionella capsiferriformans ES-2]
          Length = 367

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 25/164 (15%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQVDVP-L 103
           +C FC  D++G +     R ++  +   + +    G +  +  +  G GEP+L  D+  +
Sbjct: 51  RCTFCAVDYIGYKPV---RLSLPAIERTLVQM---GARGVKSVMFAGEGEPMLHKDIDKM 104

Query: 104 IQALNKRGFEIAVETNGTI-------EPPQGIDWICVSPKAGCDLKIKGGQELK-LVFPQ 155
           + A +  G + A+ TN ++            + WI  S  AG           K   F Q
Sbjct: 105 VIAAHAAGIDTAMTTNASVLSDAFVENALPLMSWIKASFNAGTAPTYARIHGTKERDFDQ 164

Query: 156 VNVSPENYIGFDFER---------FSLQPMDGPFLEENTNLAIS 190
           V  + +  +                 L P +   +E    L   
Sbjct: 165 VVANLKRLVEARNRHGYSCVLGAQIVLLPENAAEVETLARLCRD 208


>gi|229013933|ref|ZP_04171059.1| Molybdenum cofactor biosynthesis protein A [Bacillus mycoides DSM
           2048]
 gi|228747353|gb|EEL97230.1| Molybdenum cofactor biosynthesis protein A [Bacillus mycoides DSM
           2048]
          Length = 339

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 16/76 (21%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L +     G ++ R   LTG
Sbjct: 24  DRCNLRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKVFVSIGVRKIR---LTG 76

Query: 93  GEPLLQVDV-PLIQAL 107
           GEPLL+ D+  LI+ L
Sbjct: 77  GEPLLRKDLTKLIERL 92


>gi|229062411|ref|ZP_04199727.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH603]
 gi|228716882|gb|EEL68569.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH603]
          Length = 339

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 16/76 (21%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L +     G ++ R   LTG
Sbjct: 24  DRCNLRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKVFVSIGVRKIR---LTG 76

Query: 93  GEPLLQVDV-PLIQAL 107
           GEPLL+ D+  LI+ L
Sbjct: 77  GEPLLRKDLTKLIERL 92


>gi|229135567|ref|ZP_04264350.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           BDRD-ST196]
 gi|228647909|gb|EEL03961.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           BDRD-ST196]
          Length = 339

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 16/76 (21%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L +     G ++ R   LTG
Sbjct: 24  DRCNLRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKVFVSIGVRKIR---LTG 76

Query: 93  GEPLLQVDV-PLIQAL 107
           GEPLL+ D+  LI+ L
Sbjct: 77  GEPLLRKDLTKLIERL 92


>gi|229169460|ref|ZP_04297166.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH621]
 gi|228614018|gb|EEK71137.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH621]
          Length = 339

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 16/76 (21%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L +     G ++ R   LTG
Sbjct: 24  DRCNLRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKVFVSIGVRKIR---LTG 76

Query: 93  GEPLLQVDV-PLIQAL 107
           GEPLL+ D+  LI+ L
Sbjct: 77  GEPLLRKDLTKLIERL 92


>gi|256821137|ref|YP_003142336.1| Radical SAM domain-containing protein [Anaerococcus prevotii DSM
           20548]
 gi|256799117|gb|ACV29771.1| Radical SAM domain protein [Anaerococcus prevotii DSM 20548]
          Length = 447

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 29/105 (27%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLADLIEEQWITGEKEGRY 87
            GCNL            C++C     G +G     G  + D     I+        +   
Sbjct: 99  QGCNL-----------ACKYC----FGDEGRYNHTGFMDSDTAKQSIDFLIENTNSDKLN 143

Query: 88  CVLTGGEPLLQVDVPLIQAL----------NKRGFEIAVETNGTI 122
            +  GGEPLL     LI+ +          NK  F  ++ TNGT+
Sbjct: 144 IIFFGGEPLL--RFDLIKEIVNYCKIKESTNKLKFYFSMTTNGTL 186


>gi|167622085|ref|YP_001672379.1| molybdenum cofactor biosynthesis protein A [Shewanella halifaxensis
           HAW-EB4]
 gi|167352107|gb|ABZ74720.1| molybdenum cofactor biosynthesis protein A [Shewanella halifaxensis
           HAW-EB4]
          Length = 328

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C    +       GR +V  L +L        E   +   LTGGEPL++ D
Sbjct: 21  DRCDFRCVYC----MSEDPCFLGREHVLSLEELAWVAQAFTELGVKKIRLTGGEPLVRTD 76

Query: 101 VP-LIQAL-NKRGF-EIAVETNGT 121
              L++ L    G  E+++ TNG+
Sbjct: 77  CDQLVKLLGKLPGLEELSMTTNGS 100


>gi|126665833|ref|ZP_01736814.1| molybdenum cofactor biosynthesis protein A [Marinobacter sp. ELB17]
 gi|126629767|gb|EBA00384.1| molybdenum cofactor biosynthesis protein A [Marinobacter sp. ELB17]
          Length = 330

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 6/91 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR   +C +C    +    T   R  V  L ++        E       LTG
Sbjct: 15  NYVRLSVTDRCDFRCVYC----MAEDMTFLPRQQVLTLEEIARLAHNFVELGTEKIRLTG 70

Query: 93  GEPLLQVDV-PLIQALNKRGFE-IAVETNGT 121
           GEPL++  +  L+  +   G    A+ TNG+
Sbjct: 71  GEPLVRRGIVDLVTEIGGYGLRDFAMTTNGS 101


>gi|15678994|ref|NP_276111.1| pyruvate formate-lyase activating enzyme related protein
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2622075|gb|AAB85472.1| pyruvate formate-lyase activating enzyme related protein
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 304

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 8/82 (9%)

Query: 46  QCRFCD----TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--V 99
           +C +C+    + +        G    ++LAD      I   +       TGGEP +    
Sbjct: 55  RCAYCNAYRISQYPHSGWIYRGHVEAEELADEAI-TAIKSHERISNISFTGGEPSIHTPY 113

Query: 100 DVPLIQALNKR-GFEIAVETNG 120
              L++ + +     + + TNG
Sbjct: 114 IEELVRRVREEIDVSVILATNG 135


>gi|121603727|ref|YP_981056.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Polaromonas naphthalenivorans CJ2]
 gi|120592696|gb|ABM36135.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Polaromonas naphthalenivorans CJ2]
          Length = 396

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 10/101 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91
            L           +C +CD +     G    +  +D L   +E           + + + 
Sbjct: 22  PLSLYVHLPWCIKKCPYCDFNSHEAPGELPEQRYIDALVADLEASLPLVWGRTVHSIFIG 81

Query: 92  GGEPLL---QVDVPLI-----QALNKRGFEIAVETN-GTIE 123
           GG P L   Q    L+     +   +   EI +E N GT E
Sbjct: 82  GGTPSLFSPQAIDRLLGDIRARLRLEADCEITLEANPGTFE 122


>gi|110633911|ref|YP_674119.1| molybdenum cofactor biosynthesis protein A [Mesorhizobium sp. BNC1]
 gi|110284895|gb|ABG62954.1| GTP cyclohydrolase subunit MoaA [Chelativorans sp. BNC1]
          Length = 334

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+     K    ++++L  L       G +  R   LTGGEPL+
Sbjct: 23  DRCDFRCVYCMAEDMHFL----PKKDLLSLEELDRLCTVFIEKGVRRLR---LTGGEPLV 75

Query: 98  QVDV-PLIQALNKRGFEIAVE-----TNGT 121
           + ++  L++ L++     A+E     TNG+
Sbjct: 76  RKNIMHLMRQLSRHLKSGALEELTLTTNGS 105


>gi|332035078|gb|EGI71594.1| radical SAM family enzyme [Pseudoalteromonas haloplanktis ANT/505]
          Length = 378

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 10/109 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91
            L           +C +CD +  G +G       V  L D ++      +    + + + 
Sbjct: 5   PLSLYVHVPWCVQKCPYCDFNSHGQKGEIPEAEYVQHLIDDLKADLHLVQGRKIHSIFIG 64

Query: 92  GGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEPPQGIDWI 131
           GG P L       + L         +   EI +E N GT+E  +  D++
Sbjct: 65  GGTPSLLTGAAYTRLLNEVDNLIGLEEHCEITLEANPGTVETGRFKDYV 113


>gi|328544428|ref|YP_004304537.1| Radical SAM:Molybdenum cofactor synthesis-like protein [Polymorphum
           gilvum SL003B-26A1]
 gi|326414170|gb|ADZ71233.1| Radical SAM:Molybdenum cofactor synthesis-like protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 353

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+     K     +++L  L       G K+ R   LTGGEPL+
Sbjct: 42  DRCDFRCVYCMAEDMTFL----PKREVLTLEELDRLCSAFIEKGVKKLR---LTGGEPLV 94

Query: 98  QVDV-PLIQAL---NKRGF--EIAVETNGT 121
           + ++  LI++L      G   E+ V TNG+
Sbjct: 95  RKNIMSLIRSLSRHLASGALDELTVTTNGS 124


>gi|294783541|ref|ZP_06748865.1| hypothetical protein HMPREF0400_01535 [Fusobacterium sp. 1_1_41FAA]
 gi|294480419|gb|EFG28196.1| hypothetical protein HMPREF0400_01535 [Fusobacterium sp. 1_1_41FAA]
          Length = 298

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N++          +C FC +       T+    ++  L ++I+        E    +L G
Sbjct: 4   NVYYFNINYLCDNKCIFCYSHNTNNLKTE----SIITLKEIIKTINKYKISEKDRLILNG 59

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           GEPLL  ++  ++  ++    E  + TNG
Sbjct: 60  GEPLLHKEINEILNYISNTNIETLIFTNG 88


>gi|159036544|ref|YP_001535797.1| FO synthase [Salinispora arenicola CNS-205]
 gi|157915379|gb|ABV96806.1| Radical SAM domain protein [Salinispora arenicola CNS-205]
          Length = 836

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 17/79 (21%)

Query: 46  QCRFCDTDFVGIQGTKGG-RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-- 102
            CRFC   F          R +VDQ+AD  E+ W+ G  E     L GG   +   +P  
Sbjct: 541 GCRFC--AFAQRDRDADAYRLSVDQIADRAEQAWLAGASE---VCLQGG---IDPRLPVT 592

Query: 103 ----LIQALNKR--GFEIA 115
               L++A+  R  G  + 
Sbjct: 593 AYADLVRAIKARVPGMHVH 611


>gi|114800233|ref|YP_759790.1| molybdenum cofactor biosynthesis protein MoaA [Hyphomonas neptunium
           ATCC 15444]
 gi|114740407|gb|ABI78532.1| molybdenum cofactor biosynthesis protein MoaA [Hyphomonas neptunium
           ATCC 15444]
          Length = 343

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          K     +++L  + +     G  + R   +TGGEPL++ D
Sbjct: 30  DRCDLRCTYC-MAEQMTFLPKKDLLTLEELESVADAFIRRGVTKIR---ITGGEPLVRRD 85

Query: 101 V-PLIQALNKR 110
           +  L   L  R
Sbjct: 86  IGTLFDRLGSR 96


>gi|13470752|ref|NP_102321.1| molybdenum cofactor biosynthesis protein A [Mesorhizobium loti
           MAFF303099]
 gi|24212004|sp|Q98MK6|MOAA_RHILO RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|14021495|dbj|BAB48107.1| molybdopterin biosynthetic protein A [Mesorhizobium loti
           MAFF303099]
          Length = 331

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 22/93 (23%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+     K    ++++L  L       G +  R   LTGGEPL+
Sbjct: 20  DRCDFRCTYCMAEDMAFL----PKKDLLSLEELDRLCSVFIEKGVRRLR---LTGGEPLV 72

Query: 98  QVDV-PLIQAL---NKRGFEIAVE-----TNGT 121
           + ++  L++ L      G   A+E     TNG+
Sbjct: 73  RKNIMHLVRQLSRHLDSG---ALEELTLTTNGS 102


>gi|22027536|ref|NP_005934.2| molybdenum cofactor biosynthesis protein 1 isoform 1 [Homo sapiens]
 gi|3559907|emb|CAA11897.1| MOCS1A protein [Homo sapiens]
 gi|14971423|emb|CAC44527.1| MOCS1A enzyme [Homo sapiens]
 gi|56204713|emb|CAI20014.1| molybdenum cofactor synthesis 1 [Homo sapiens]
 gi|119624407|gb|EAX04002.1| molybdenum cofactor synthesis 1, isoform CRA_d [Homo sapiens]
          Length = 385

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C  +       K      +++  L       G  + R   LT
Sbjct: 80  CNL-----------RCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGIDKIR---LT 125

Query: 92  GGEPLLQVD-VPLIQALNK-RGFE-IAVETNG 120
           GGEPL++ D V ++  L +  G   I V TNG
Sbjct: 126 GGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNG 157


>gi|300856784|ref|YP_003781768.1| putative Fe-S oxidoreductase [Clostridium ljungdahlii DSM 13528]
 gi|300436899|gb|ADK16666.1| predicted Fe-S oxidoreductase [Clostridium ljungdahlii DSM 13528]
          Length = 345

 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 32/108 (29%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR-- 86
            + CN            +C+ C       +   G   + +++ +++E+         +  
Sbjct: 16  TAKCN-----------QRCKHC-----YQECYAGKELSFNEILNILEQYKDLLRLYSKSK 59

Query: 87  -------YCVLTGGEPLLQVDVPLIQALN-----KRGFEIAVETNGTI 122
                  +  +TGGEP  + D   +Q L      K+ F   + TNG+ 
Sbjct: 60  NKDFIRGHINITGGEPFTRKD--FLQILKVFSKNKKYFSFGILTNGSY 105


>gi|296113214|ref|YP_003627152.1| oxygen-independent coproporphyrinogen III oxidase-like protein YggW
           [Moraxella catarrhalis RH4]
 gi|295920908|gb|ADG61259.1| oxygen-independent coproporphyrinogen III oxidase-like protein YggW
           [Moraxella catarrhalis RH4]
 gi|326560207|gb|EGE10595.1| oxygen-independent coproporphyrinogen III oxidase-like protein YggW
           [Moraxella catarrhalis 7169]
 gi|326562766|gb|EGE13062.1| oxygen-independent coproporphyrinogen III oxidase-like protein YggW
           [Moraxella catarrhalis 103P14B1]
 gi|326564945|gb|EGE15147.1| oxygen-independent coproporphyrinogen III oxidase-like protein YggW
           [Moraxella catarrhalis 46P47B1]
 gi|326567876|gb|EGE17977.1| oxygen-independent coproporphyrinogen III oxidase-like protein YggW
           [Moraxella catarrhalis 12P80B1]
 gi|326573317|gb|EGE23285.1| oxygen-independent coproporphyrinogen III oxidase-like protein YggW
           [Moraxella catarrhalis 101P30B1]
 gi|326575787|gb|EGE25710.1| oxygen-independent coproporphyrinogen III oxidase-like protein YggW
           [Moraxella catarrhalis CO72]
 gi|326576867|gb|EGE26773.1| oxygen-independent coproporphyrinogen III oxidase-like protein YggW
           [Moraxella catarrhalis O35E]
          Length = 391

 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 10/111 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L+D + +Q +   ++     + 
Sbjct: 12  PLSLYIHIPWCVKKCPYCDFNSHALPSQVPFENYIEALLSDAVSQQSLVSNRQIDTVFIG 71

Query: 92  GGEPLLQVDVP---LIQALN-----KRGFEIAVETN-GTIEPPQGIDWICV 133
           GG P L        L   L          EI +E N GT+E     +++ +
Sbjct: 72  GGTPSLLPIESFKRLFDGLRLIYDFAPTCEITLEANPGTLEHSPFDEYLTI 122


>gi|293401191|ref|ZP_06645335.1| pyruvate formate-lyase activating enzyme [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305317|gb|EFE46562.1| pyruvate formate-lyase activating enzyme [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 298

 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 50  CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQAL 107
           C T  +         Y V+++ + + +  +  ++EG    ++GGEP LQ    + +++  
Sbjct: 89  CPTRAMQFDS---RSYTVEEVMEELLKDEVFFQREGG-ITISGGEPFLQHEFLIEILKEC 144

Query: 108 NKRGFEIAVETN 119
            K+    A+E++
Sbjct: 145 KKKQLHTAIESS 156


>gi|289618459|emb|CBI55183.1| unnamed protein product [Sordaria macrospora]
          Length = 771

 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 19/94 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C  +               ++  L       G  + R   LT
Sbjct: 138 CNL-----------RCLYCMPEEGVPLSPPKELLTTPEIVLLSSLFVSQGVTKIR---LT 183

Query: 92  GGEPLLQVDV-PLIQ---ALNKRGF-EIAVETNG 120
           GGEP ++ D+ PLIQ   AL   G  E+ + TNG
Sbjct: 184 GGEPTVRRDIVPLIQQIGALRAHGLRELCLTTNG 217


>gi|300022957|ref|YP_003755568.1| lysine 2,3-aminomutase YodO family protein [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299524778|gb|ADJ23247.1| lysine 2,3-aminomutase YodO family protein [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 356

 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
           CRFC      +    G   + D LA  +   +I         +LTGG+PL
Sbjct: 109 CRFC-FRREMVGPANGETLSADDLAAAVA--YIRATPAVWEVILTGGDPL 155


>gi|240144502|ref|ZP_04743103.1| radical SAM domain protein [Roseburia intestinalis L1-82]
 gi|257203489|gb|EEV01774.1| radical SAM domain protein [Roseburia intestinalis L1-82]
          Length = 457

 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 27/103 (26%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD--QLADLIEEQWITGEKEGRY-- 87
           CNL            C++C       +G   GR  +   ++     +  I      R   
Sbjct: 108 CNL-----------ACQYC----FAEEGEYHGRRALMSFEVGKKALDFLIANSGNRRNLE 152

Query: 88  CVLTGGEPLL--QVDVPLI------QALNKRGFEIAVETNGTI 122
               GGEPL+  QV   L+      + L+ + F   + TNG +
Sbjct: 153 VDFFGGEPLMNWQVVKDLVAYGREQEKLHDKNFRFTLTTNGVL 195


>gi|170698510|ref|ZP_02889581.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
           ambifaria IOP40-10]
 gi|170136594|gb|EDT04851.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
           ambifaria IOP40-10]
          Length = 404

 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 17/106 (16%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87
            L           +C +CD         KG R+   +  D +             ++   
Sbjct: 28  PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPETEYLDALRADLEQALPLVWGRQVHT 84

Query: 88  CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124
             + GG P L     L + L             EI +E N GT E 
Sbjct: 85  VFIGGGTPSLLSASGLDRLLSDVRALLPLDADAEITLEANPGTFEA 130


>gi|163857994|ref|YP_001632292.1| molybdenum cofactor biosynthesis protein A [Bordetella petrii DSM
           12804]
 gi|163261722|emb|CAP44024.1| molybdenum cofactor biosynthesis protein A [Bordetella petrii]
          Length = 370

 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 12/76 (15%)

Query: 41  DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           DR + +C +C      D ++  +   +    + +++  L       G ++ R   LTGGE
Sbjct: 47  DRCNFRCTYCMPREVFDGNYAFM--PQSALLSFEEITRLARLFAQLGVEKIR---LTGGE 101

Query: 95  PLLQVDVP-LIQALNK 109
           PLL+ ++  LI  L +
Sbjct: 102 PLLRKNIESLIAMLAE 117


>gi|154150501|ref|YP_001404119.1| radical SAM domain-containing protein [Candidatus Methanoregula
           boonei 6A8]
 gi|153999053|gb|ABS55476.1| Radical SAM domain protein [Methanoregula boonei 6A8]
          Length = 356

 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 8/81 (9%)

Query: 42  RLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           R   +C  C   +V        G  + D+   +++    TG       VL+GGEPL++ D
Sbjct: 18  RCPLKCSHC---YVDAGTREAPGVLSTDEALGVLDRIRATG---TPVVVLSGGEPLMRDD 71

Query: 101 VPLIQA-LNKRGFEIAVETNG 120
           +  I      RG  + + T+G
Sbjct: 72  LCTIARYGTDRGLRMVMGTSG 92


>gi|87198947|ref|YP_496204.1| GTP cyclohydrolase subunit MoaA [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87134628|gb|ABD25370.1| GTP cyclohydrolase subunit MoaA [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 339

 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          K    ++++L  L       G ++ R   LTGGEPL++ D
Sbjct: 29  DRCDLRCAYC-MPERMEFLPKAEVLSLEELHRLSLHFIARGVRKIR---LTGGEPLVRRD 84

Query: 101 -VPLIQALNKR---GF-EIAVETNGT 121
            V L++AL ++   G  E+ + TNGT
Sbjct: 85  MVDLVRALGRKLGDGLDELTMTTNGT 110


>gi|15920846|ref|NP_376515.1| hypothetical protein ST0626 [Sulfolobus tokodaii str. 7]
 gi|15621630|dbj|BAB65624.1| 350aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 350

 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           LW      + +  C +C   F       G +Y++ +L + IE      + +    +  GG
Sbjct: 2   LWLVLTTGKCNLTCDYCGGSFPSHIVPWGVKYDIQKLKNAIE------KDQNATVIFYGG 55

Query: 94  EPLLQVD--VPLIQALNKRGFEIAVETNG 120
           EPL+     + ++  +  + + I   TNG
Sbjct: 56  EPLMNPKFIMQVMDNIKAKRWGIQ--TNG 82


>gi|326570282|gb|EGE20327.1| oxygen-independent coproporphyrinogen III oxidase-like protein YggW
           [Moraxella catarrhalis BC8]
 gi|326571019|gb|EGE21043.1| oxygen-independent coproporphyrinogen III oxidase-like protein YggW
           [Moraxella catarrhalis BC7]
          Length = 391

 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 10/111 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L+D + +Q +   ++     + 
Sbjct: 12  PLSLYIHMPWCVKKCPYCDFNSHALPSQVPFENYIEALLSDAVSQQSLVSNRQIDTVFIG 71

Query: 92  GGEPLLQVDVP---LIQALN-----KRGFEIAVETN-GTIEPPQGIDWICV 133
           GG P L        L   L          EI +E N GT+E     +++ +
Sbjct: 72  GGTPSLLPIESFKRLFDGLRLIYDFAPTCEITLEANPGTLEHSPFDEYLTI 122


>gi|302916765|ref|XP_003052193.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256733132|gb|EEU46480.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 648

 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 19/94 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C  +         G     ++  L       G  + R   LT
Sbjct: 93  CNL-----------RCVYCMPEEGVPLSPNRGLLTTPEIVLLSSVFVSQGVSKIR---LT 138

Query: 92  GGEPLLQVD-VPLIQ---ALNKRGF-EIAVETNG 120
           GGEP ++ D +PL++    L + G  EI + TNG
Sbjct: 139 GGEPTVRRDILPLMRQIGELRRHGLKEICITTNG 172


>gi|197249679|ref|YP_002148018.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197213382|gb|ACH50779.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 378

 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L DL  +      +E +   + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLDADVVWAQGREVKTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L              EI +E N GT+E  + ID+
Sbjct: 66  GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDY 113


>gi|329998595|ref|ZP_08303179.1| radical SAM domain protein [Klebsiella sp. MS 92-3]
 gi|328538614|gb|EGF64714.1| radical SAM domain protein [Klebsiella sp. MS 92-3]
          Length = 197

 Score = 35.4 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L DL  +      +E     + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLQADAHYAQGREIGTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L            G EI +E N GT+E  + +D+
Sbjct: 66  GGTPSL-LSGPAMQTLLDGVRACLPLAAGAEITMEANPGTVEADRFVDY 113


>gi|291563040|emb|CBL41856.1| ribonucleoside-triphosphate reductase class III activase subunit
           [butyrate-producing bacterium SS3/4]
          Length = 164

 Score = 35.4 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 23/88 (26%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGI--QGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            +GC           S  C  C          G        ++L + +   WI+G     
Sbjct: 23  LAGC-----------SHACPGCQNPVTWDVKGGLPFDEAAKEELFEALSPAWISG----- 66

Query: 87  YCVLTGGEPLLQVDVP----LIQALNKR 110
               +GG+PL   +      LI+ ++K+
Sbjct: 67  -VTFSGGDPLHWQNRKETGNLIEEIHKK 93


>gi|284161609|ref|YP_003400232.1| radical SAM protein [Archaeoglobus profundus DSM 5631]
 gi|284011606|gb|ADB57559.1| Radical SAM domain protein [Archaeoglobus profundus DSM 5631]
          Length = 337

 Score = 35.4 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 22/114 (19%)

Query: 47  CRFCDT--DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102
           C +C    +  G          V ++ D IEE      +      +TGGEPLL++D  V 
Sbjct: 43  CFYCPISEERRGKDVVFANEREVKRIEDAIEEANAMSAEG---IAITGGEPLLKLDRVVE 99

Query: 103 LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156
            ++        +               +  +  K     K+K   E++   P++
Sbjct: 100 FLKTFKDLHSHL---------------YTAIPAKESVLSKLKHLDEIRFHPPEL 138


>gi|298527846|ref|ZP_07015250.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511498|gb|EFI35400.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 212

 Score = 35.4 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 16/93 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           F GCNL           +C  C              + V     ++E+            
Sbjct: 33  FGGCNL-----------RCPTC---HNASFAWHPESFPVLDCLGVLEQVQR-NRNWLEGL 77

Query: 89  VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
           VLTGGE  +      L+  L+     I ++TNG
Sbjct: 78  VLTGGEVTILPGFDSLLHDLSSLNIPIKLDTNG 110


>gi|149917579|ref|ZP_01906076.1| Molybdenum cofactor biosynthesis protein A (moaA) [Plesiocystis
           pacifica SIR-1]
 gi|149821642|gb|EDM81040.1| Molybdenum cofactor biosynthesis protein A (moaA) [Plesiocystis
           pacifica SIR-1]
          Length = 664

 Score = 35.4 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 38/120 (31%), Gaps = 30/120 (25%)

Query: 27  CRFS-GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
            R +  CN             C FC         T  G Y   +  ++  +      K  
Sbjct: 27  VRLTFDCN-----------DNCIFC-----LDSHTHNGTYRSRE--EVKAQILDGRRKGA 68

Query: 86  RYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG---------TIEPPQGIDWICVS 134
              +L+GGEP +  D    ++     G+  I   TNG         T    +G+  I  S
Sbjct: 69  ERLILSGGEPTIHPDYAQFVRLGRLAGYKRIQTVTNGRLFAYKDFLTRCIDEGLGEITFS 128


>gi|116252458|ref|YP_768296.1| molybdenum cofactor biosynthesis protein A [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115257106|emb|CAK08200.1| putative molybdenum cofactor biosynthesis protein A [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 328

 Score = 35.4 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          K     +++L  L       G ++ R   LTGGEPL++ +
Sbjct: 18  DRCDFRCTYC-MAENMTFLPKKDLLTLEELDRLCSAFIAKGVRKIR---LTGGEPLVRKN 73

Query: 101 VP-LIQALNKR---GF-EIAVETNGT 121
           +  L++ L ++   G  E+ + TNG+
Sbjct: 74  IMYLVRQLGQKIGSGLDELTLTTNGS 99


>gi|307316447|ref|ZP_07595890.1| coenzyme PQQ biosynthesis protein E [Sinorhizobium meliloti AK83]
 gi|306897645|gb|EFN28388.1| coenzyme PQQ biosynthesis protein E [Sinorhizobium meliloti AK83]
          Length = 375

 Score = 35.4 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R    C +C       Q       + ++   +  +    G        L+GGEP  + D+
Sbjct: 31  RCPLACPYCSNPIALTQA--KEELSTEEWTGVFAQAADLGVLHLH---LSGGEPAARRDL 85

Query: 102 -PLIQALNKRGFEIAVETNG 120
             L QA +  G    + T+G
Sbjct: 86  VELTQAASSLGLYTNLITSG 105


>gi|255505729|ref|ZP_05347815.3| radical SAM domain protein [Bryantella formatexigens DSM 14469]
 gi|255266114|gb|EET59319.1| radical SAM domain protein [Bryantella formatexigens DSM 14469]
          Length = 477

 Score = 35.4 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 36/107 (33%)

Query: 32  CNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRY--NVDQLADLIEEQWITGEKEGR 86
           CN+      D  SA    C  C           G +    +D +  +I +    G     
Sbjct: 138 CNVPWAILLDPTSACNMHCVGC------WAAEYGHKLNLTLDDIDSIIRQGKELGIY--- 188

Query: 87  YCVLTGGEPL-----------LQVDVPLIQALNKRGFEIAVETNGTI 122
           + + TGGEPL           +  D   +             TNGT+
Sbjct: 189 FYIYTGGEPLVRKKDIIKLCEMHPDCEFLSF-----------TNGTL 224


>gi|206561361|ref|YP_002232126.1| coproporphyrinogen III oxidase [Burkholderia cenocepacia J2315]
 gi|198037403|emb|CAR53338.1| putative coproporphyrinogen III oxidase family protein
           [Burkholderia cenocepacia J2315]
          Length = 404

 Score = 35.4 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 17/106 (16%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87
            L           +C +CD         KG R+   +  D +             ++   
Sbjct: 28  PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPETEYLDALRADLEQALPLVWGRQVHT 84

Query: 88  CVLTGGEPLLQVDVPL------IQAL--NKRGFEIAVETN-GTIEP 124
             + GG P L     L      ++AL       EI +E N GT E 
Sbjct: 85  VFIGGGTPSLLSAAGLDRMLSDVRALLPLDADAEITLEANPGTFEA 130


>gi|149920706|ref|ZP_01909171.1| Molybdenum cofactor biosynthesis protein A (moaA) [Plesiocystis
           pacifica SIR-1]
 gi|149818493|gb|EDM77942.1| Molybdenum cofactor biosynthesis protein A (moaA) [Plesiocystis
           pacifica SIR-1]
          Length = 664

 Score = 35.4 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 38/120 (31%), Gaps = 30/120 (25%)

Query: 27  CRFS-GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
            R +  CN             C FC         T  G Y   +  ++  +      K  
Sbjct: 27  VRLTFDCN-----------DNCIFC-----LDSHTHNGTYRSRE--EVKAQILDGRRKGA 68

Query: 86  RYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG---------TIEPPQGIDWICVS 134
              +L+GGEP +  D    ++     G+  I   TNG         T    +G+  I  S
Sbjct: 69  ERLILSGGEPTIHPDYAQFVRLGRLAGYKRIQTVTNGRLFAYKDFLTRCIDEGLGEITFS 128


>gi|289804233|ref|ZP_06534862.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 127

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77

Query: 99  VDVPLIQALNKRG-----FEIAVETNGTIEPPQGIDW 130
            D      +   G      +IAV TNG        +W
Sbjct: 78  RD--FTDIIAAVGENDAIRQIAVTTNGYRLARDAANW 112


>gi|224582615|ref|YP_002636413.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|254811547|sp|C0PWZ0|MOAA_SALPC RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|224467142|gb|ACN44972.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 329

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77

Query: 99  VDVPLIQALNKRG-----FEIAVETNGTIEPPQGIDW 130
            D      +   G      +IAV TNG        +W
Sbjct: 78  RD--FTDIIAAVGENDAIRQIAVTTNGYRLARDAANW 112


>gi|213616116|ref|ZP_03371942.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 248

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77

Query: 99  VDVPLIQALNKRG-----FEIAVETNGTIEPPQGIDW 130
            D      +   G      +IAV TNG        +W
Sbjct: 78  RD--FTDIIAAVGENDAIRQIAVTTNGYRLARDAANW 112


>gi|213584190|ref|ZP_03366016.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 214

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77

Query: 99  VDVPLIQALNKRG-----FEIAVETNGTIEPPQGIDW 130
            D      +   G      +IAV TNG        +W
Sbjct: 78  RD--FTDIIAAVGENDAIRQIAVTTNGYRLARDAANW 112


>gi|182439559|ref|YP_001827278.1| hypothetical protein SGR_5766 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178468075|dbj|BAG22595.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 779

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 36/113 (31%), Gaps = 24/113 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYC 88
           C+L          A   +          T+    + + +   A  + E   T        
Sbjct: 19  CDLACDHCYVYEHADQSW---------STRPRTISDEAISWTARRLAEHATTHALPSVTV 69

Query: 89  VLTGGEPLLQ-------VDVPLIQALN---KRGFEIAVETNGTIEPPQGIDWI 131
           +L GGEPLL        V   L  ALN   +    I   TNG    P+ +D  
Sbjct: 70  ILHGGEPLLAGPARLRRVCEELGSALNGIAELDLRIH--TNGVQLSPRYLDLF 120


>gi|198241803|ref|YP_002214766.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205352060|ref|YP_002225861.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207856239|ref|YP_002242890.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|226707380|sp|B5FP68|MOAA_SALDC RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|226707381|sp|B5QX73|MOAA_SALEP RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|226707382|sp|B5R769|MOAA_SALG2 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|197936319|gb|ACH73652.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205271841|emb|CAR36676.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|206708042|emb|CAR32333.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|326622521|gb|EGE28866.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326627102|gb|EGE33445.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 329

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77

Query: 99  VDVPLIQALNKRG-----FEIAVETNGTIEPPQGIDW 130
            D      +   G      +IAV TNG        +W
Sbjct: 78  RD--FTDIIAAVGENDAIRQIAVTTNGYRLARDAANW 112


>gi|161504030|ref|YP_001571142.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865377|gb|ABX22000.1| hypothetical protein SARI_02123 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 340

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 33  DVCNFRCTYCLPD-GYKLGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 88

Query: 99  VDVPLIQALNKRG-----FEIAVETNGTIEPPQGIDW 130
            D      +   G      +IAV TNG        +W
Sbjct: 89  RD--FTDIIAAVGENEAIRQIAVTTNGYRLARDAANW 123


>gi|154491690|ref|ZP_02031316.1| hypothetical protein PARMER_01301 [Parabacteroides merdae ATCC
           43184]
 gi|154087931|gb|EDN86976.1| hypothetical protein PARMER_01301 [Parabacteroides merdae ATCC
           43184]
          Length = 440

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 41/137 (29%)

Query: 31  GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           GC+ +           C +C   F   +   G       +A ++++        G+  VL
Sbjct: 159 GCDYF-----------CSYCTIPFARGRSRNG------TIASMVKQAEEVASNGGKEIVL 201

Query: 91  TG----------GEPLLQVDVPLIQALNK-RG---FEI-AVETNGTIEPPQGIDWICVSP 135
           TG          GE      + LI+AL++  G   + I ++E N  +   + ID++  S 
Sbjct: 202 TGVNIGDFGKSTGE----TFIDLIRALDEVEGIVRYRISSIEPN--LITDEAIDFVACSR 255

Query: 136 KAGCDLKIK---GGQEL 149
           +      I    G  E+
Sbjct: 256 RFAPHFHIPLQSGSDEV 272


>gi|149173373|ref|ZP_01852003.1| astB/chuR-related protein-putative enzyme of the MoaA / nifB / pqqE
           family [Planctomyces maris DSM 8797]
 gi|148847555|gb|EDL61888.1| astB/chuR-related protein-putative enzyme of the MoaA / nifB / pqqE
           family [Planctomyces maris DSM 8797]
          Length = 438

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 23/91 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C+ C      +    K  + +V+ ++ LI+E    G         
Sbjct: 58  CNL-----------RCQGC-----WVDVAAKQEKIDVEAMSRLIQEAKEMGNSFFGIL-- 99

Query: 91  TGGEPLLQVDVPLIQALNKR-GFEIAVETNG 120
            GGEP +     L++ L +       + TNG
Sbjct: 100 -GGEPFMHPQ--LLEILERHPDCYFQIFTNG 127


>gi|152988281|ref|YP_001347893.1| putative radical activating enzyme [Pseudomonas aeruginosa PA7]
 gi|150963439|gb|ABR85464.1| probable radical activating enzyme [Pseudomonas aeruginosa PA7]
          Length = 212

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 25/87 (28%)

Query: 29  FSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
           F GC           S +C  C   DT      G    R  + +L   I+      E   
Sbjct: 25  FQGC-----------SIRCPGCISADT-----WGPGRRRIALARLLADIQPWLEQAEG-- 66

Query: 86  RYCVLTGGEPLLQ--VDVPLIQALNKR 110
               ++GGEP  Q    + L+  L +R
Sbjct: 67  --ITVSGGEPFEQFDALLALLGELRQR 91


>gi|62179370|ref|YP_215787.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62127003|gb|AAX64706.1| molybdopterin biosynthesis, protein A [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322713841|gb|EFZ05412.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 340

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 33  DVCNFRCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 88

Query: 99  VDVPLIQALNKRG-----FEIAVETNGTIEPPQGIDW 130
            D      +   G      +IAV TNG        +W
Sbjct: 89  RD--FTDIIAAVGENDAIRQIAVTTNGYRLARDAANW 123


>gi|325527317|gb|EGD04681.1| radical SAM domain protein [Burkholderia sp. TJI49]
          Length = 386

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 22/120 (18%)

Query: 32  CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  C   D+         R +V++  + ++E             +
Sbjct: 38  CNL-----------ACNGCGKIDY--PDPILNQRLSVEECLEAVDECG------APIVSI 78

Query: 91  TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
            GGEPLL  ++P +++ + KR   + + TN  +   + +D    +P     + + G +E+
Sbjct: 79  AGGEPLLHKEMPEIVKGIMKRKKFVYLCTN-ALLMEKKMDDYQPNPYFVWSVHLDGDKEM 137


>gi|307297318|ref|ZP_07577124.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916578|gb|EFN46960.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 209

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 10/78 (12%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLI 104
           C +C             R   +     + +      K     V+TGGEP L+    +P +
Sbjct: 20  CAYC------HNSELKKRVKEELGESEVFDYLDKRGKLLDAVVITGGEPTLRASELLPFM 73

Query: 105 QALNKRGFEIA--VETNG 120
           + L  R  E    ++TNG
Sbjct: 74  RRLKSRFPETLLKIDTNG 91


>gi|222148529|ref|YP_002549486.1| molybdenum cofactor biosynthesis protein A [Agrobacterium vitis S4]
 gi|221735515|gb|ACM36478.1| molybdenum cofactor biosynthesis protein A [Agrobacterium vitis S4]
          Length = 329

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          K     +++L  L       G ++ R   LTGGEPL++ +
Sbjct: 18  DRCDFRCTYC-MAENMSFLPKKDLLTLEELDRLCSAFIAKGVRKLR---LTGGEPLVRKN 73

Query: 101 VPLIQALNKRGFEI-AVE-----TNGT 121
           +  +     R  +  A+E     TNG+
Sbjct: 74  IMFLVRSLSRHLQNGALEELTLTTNGS 100


>gi|261419016|ref|YP_003252698.1| molybdenum cofactor biosynthesis protein A [Geobacillus sp.
           Y412MC61]
 gi|319765832|ref|YP_004131333.1| molybdenum cofactor biosynthesis protein A [Geobacillus sp.
           Y412MC52]
 gi|261375473|gb|ACX78216.1| molybdenum cofactor biosynthesis protein A [Geobacillus sp.
           Y412MC61]
 gi|317110698|gb|ADU93190.1| molybdenum cofactor biosynthesis protein A [Geobacillus sp.
           Y412MC52]
          Length = 341

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 10/87 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV----LTGGEPL 96
           D+ + +C +C      + G        DQL   ++E  +  E      V    LTGGEPL
Sbjct: 26  DQCNFRCVYC--MPAEVFGPNFRFLAEDQLL-TVDEMALLAECFVELGVEKIRLTGGEPL 82

Query: 97  LQVDVP-LIQALNK-RGFE-IAVETNG 120
           L+ D+  LI+ L+   G   +A+ TNG
Sbjct: 83  LRRDLDVLIERLSMIPGLRDVALTTNG 109


>gi|170759693|ref|YP_001785423.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum A3 str. Loch Maree]
 gi|169406682|gb|ACA55093.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 171

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 20/95 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           R  VF   SGC       Q++      FC           G + ++  +   IE      
Sbjct: 23  RSVVFV--SGCKHNCKECQNKEMQ--SFC----------YGDKISLKDILKRIESNVPL- 67

Query: 82  EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
               R    +GGEPL        L + +   G  I
Sbjct: 68  ---IRGVTFSGGEPLEHIKELSSLAREIKSLGLNI 99


>gi|163816598|ref|ZP_02207962.1| hypothetical protein COPEUT_02789 [Coprococcus eutactus ATCC 27759]
 gi|158448298|gb|EDP25293.1| hypothetical protein COPEUT_02789 [Coprococcus eutactus ATCC 27759]
          Length = 280

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 32/123 (26%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-------- 76
           VF    GC +      +  +       TD+  +   +      ++L   IEE        
Sbjct: 29  VF--LQGCKMRCKYCHNPETWNLV---TDYSKLYSDETSDAEREELEKKIEENTKLLKDK 83

Query: 77  -----------QWITGEKEGRY------CVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117
                            +   Y        ++GGE LLQ+D  +   +     G    ++
Sbjct: 84  GVKIEARTPEDLLKQALRYKPYWKNGGGITVSGGEALLQMDFLIEFFKLAKAEGIHTTID 143

Query: 118 TNG 120
           T G
Sbjct: 144 TAG 146


>gi|330962704|gb|EGH62964.1| molybdenum cofactor biosynthesis protein A [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 332

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C    +  + T   R  +  L ++++          R   LTGGEPL++  
Sbjct: 23  DRCDFRCVYC----MAEEMTFLPRQQILSLEEILQVAERFVALGTRKIRLTGGEPLVRAG 78

Query: 101 VP-LIQALNKR-GF-EIAVETNGT 121
           V  L + +    G  E+ + TNG+
Sbjct: 79  VVGLCERIAALPGLRELCMTTNGS 102


>gi|330721583|gb|EGG99611.1| Molybdenum cofactor biosynthesis protein MoaA [gamma
           proteobacterium IMCC2047]
          Length = 328

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C    +  +     R  V  L ++ E      E       LTGGEPL++ +
Sbjct: 20  DRCDFRCVYC----MAEEMEFLPRARVLTLEEMTEIGTAFVELGIEKIRLTGGEPLIRRN 75

Query: 101 VP-LIQALNK-RGF-EIAVETNGT 121
           +  ++++L +  G  E+ + TNG+
Sbjct: 76  MESMVESLGQLEGLKELTITTNGS 99


>gi|295094964|emb|CBK84055.1| pyruvate formate-lyase 1-activating enzyme [Coprococcus sp.
           ART55/1]
          Length = 280

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 32/123 (26%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-------- 76
           VF    GC +      +  +       TD+  +   +      ++L   IEE        
Sbjct: 29  VF--LQGCKMRCKYCHNPETWNLV---TDYSKLYSDETSDAEREELEKKIEENTKLLKDK 83

Query: 77  -----------QWITGEKEGRY------CVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117
                            +   Y        ++GGE LLQ+D  +   +     G    ++
Sbjct: 84  GVKIEARTPEDLLKQALRYKPYWKNGGGITVSGGEALLQMDFLIEFFKLAKAEGIHTTID 143

Query: 118 TNG 120
           T G
Sbjct: 144 TAG 146


>gi|317047398|ref|YP_004115046.1| molybdenum cofactor biosynthesis protein A [Pantoea sp. At-9b]
 gi|316949015|gb|ADU68490.1| molybdenum cofactor biosynthesis protein A [Pantoea sp. At-9b]
          Length = 328

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 9/95 (9%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +           ++D++  +       G ++ R   LTGGEP L+
Sbjct: 21  DVCNFRCTYCLPD-GYKPQGTRNKSFLSLDEIRRVTRAFAAAGTEKVR---LTGGEPSLR 76

Query: 99  VD-VPLIQALNKRG--FEIAVETNGTIEPPQGIDW 130
            D   +I A+ +     +IAV TNG        DW
Sbjct: 77  RDFTEIIAAVRENAAIRQIAVTTNGYRLARDVRDW 111


>gi|255100845|ref|ZP_05329822.1| molybdenum cofactor biosynthesis protein [Clostridium difficile
           QCD-63q42]
          Length = 319

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           D+ + +C +C   D  F   +       + +    +I+     G  + R+   TGGEPLL
Sbjct: 18  DKCNLRCVYCMPPDVKF--DKNYINENLSFEDYKFIIKAMAEQGITKIRF---TGGEPLL 72

Query: 98  QVDV-PLIQALNKR 110
              +  LI+   + 
Sbjct: 73  YPKLNELIKFTKEE 86


>gi|254457435|ref|ZP_05070863.1| hypothetical protein CBGD1_1131 [Campylobacterales bacterium GD 1]
 gi|207086227|gb|EDZ63511.1| hypothetical protein CBGD1_1131 [Campylobacterales bacterium GD 1]
          Length = 373

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 18/102 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       + +      DT               +Q+   I E     E   ++ + +
Sbjct: 33  CNLSCMHCYSKSTL--DEVDT------------LTTEQIKKTILEMK---ENGVKFIIFS 75

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
           GGEPL + D+  +       G    + +NG       I  I 
Sbjct: 76  GGEPLTRKDLFEIADFCKDNGIITYLSSNGLYFTKGNIKRIV 117


>gi|168263700|ref|ZP_02685673.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|205347812|gb|EDZ34443.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
          Length = 329

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77

Query: 99  VDVPLIQALNKRG-----FEIAVETNGTIEPPQGIDW 130
            D      +   G      +IAV TNG        +W
Sbjct: 78  RD--FTDIIAAVGENDAIRQIAVTTNGYRLARDAANW 112


>gi|145321187|gb|ABP63662.1| molybdenum cofactor biosynthesis protein A [Achromobacter sp. SY8]
          Length = 364

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 22/97 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           D+ + +C +C        D  F+            D+L          G ++ R   L+G
Sbjct: 46  DQCNFRCTYCMPREVFGADYPFLRRD----ELLTFDELERTARAFIRLGVRKIR---LSG 98

Query: 93  GEPLLQVDVPLIQA-------LNKRGFEIAVETNGTI 122
           GEPLL+ D+  + A       L     ++A+ TNG +
Sbjct: 99  GEPLLRKDLEHLVAQLARLVTLAGEPIDLAMTTNGAL 135


>gi|87307325|ref|ZP_01089470.1| putative heme d1 biosynthesis protein [Blastopirellula marina DSM
           3645]
 gi|87290065|gb|EAQ81954.1| putative heme d1 biosynthesis protein [Blastopirellula marina DSM
           3645]
          Length = 395

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 84  EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
                 + GGEPLL   +  ++  L  R   I + TN  ++    +     S      + 
Sbjct: 84  GAPIVSIPGGEPLLHPQINEIVDGLVARKKYIYLCTN-ALKLEAALPSFTPSKYLSFSVH 142

Query: 143 IKGGQE 148
           + G +E
Sbjct: 143 MDGPRE 148


>gi|312137249|ref|YP_004004586.1| radical sam domain protein [Methanothermus fervidus DSM 2088]
 gi|311224968|gb|ADP77824.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088]
          Length = 487

 Score = 35.4 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 11/88 (12%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
           +W+  +  R +  C+ C          + G+ +V  + D+I  + I           +GG
Sbjct: 116 VWNITQ--RCNMNCKHC--YESKGNSEELGKEDVMNIIDIISSEKI------PILAFSGG 165

Query: 94  EPLLQVD-VPLIQALNKRGFEIAVETNG 120
           EP +  + +  I+  +++G  +A+ TNG
Sbjct: 166 EPSIHPNILDYIEYASEKGLYVAMATNG 193


>gi|312970855|ref|ZP_07785034.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           1827-70]
 gi|310336616|gb|EFQ01783.1| molybdenum cofactor biosynthesis protein A [Escherichia coli
           1827-70]
          Length = 329

 Score = 35.4 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPSGVTNKGFLTVDEIRRVTRAFVSLGTEKVR---LTGGEPSLR 77

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 78  RDFTDIIAAVRENDAIRQIAVTTNG 102


>gi|307300200|ref|ZP_07579985.1| coenzyme PQQ biosynthesis protein E [Sinorhizobium meliloti BL225C]
 gi|306905089|gb|EFN35672.1| coenzyme PQQ biosynthesis protein E [Sinorhizobium meliloti BL225C]
          Length = 375

 Score = 35.4 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R    C +C       Q       + ++   +  +    G        L+GGEP  + D+
Sbjct: 31  RCPLACPYCSNPIALTQA--KEELSTEEWTGVFAQAADLGVLHLH---LSGGEPAARRDL 85

Query: 102 -PLIQALNKRGFEIAVETNG 120
             L QA +  G    + T+G
Sbjct: 86  VELTQAASSLGLYTNLITSG 105


>gi|240949712|ref|ZP_04754047.1| hypothetical protein AM305_12200 [Actinobacillus minor NM305]
 gi|240295970|gb|EER46646.1| hypothetical protein AM305_12200 [Actinobacillus minor NM305]
          Length = 333

 Score = 35.4 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
           +  CR+C       +  K G+    Q    I E     E      +L+GG+PL+  D  L
Sbjct: 118 AINCRYCFRRHFPYEDVKSGKSAWQQSLQYIAEHPEIEE-----VILSGGDPLMAKDEEL 172

Query: 104 IQALNKRGFEIAVET 118
              L        V+T
Sbjct: 173 DWILTALEKITHVKT 187


>gi|222528835|ref|YP_002572717.1| molybdenum cofactor biosynthesis protein A [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222455682|gb|ACM59944.1| molybdenum cofactor biosynthesis protein A [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 314

 Score = 35.4 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 8/123 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR +  C +C T  +  + +         +  +I      G ++ R   +TG
Sbjct: 16  NYLRLSVTDRCNFFCMYCRTKDLCSESSSQLSEEE--IFRIISAFKKLGIQKLR---ITG 70

Query: 93  GEPLLQVDV-PLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
           GEP L+ D+  +I+  NK G E I + TNG ++  + I  I  SP    ++ +      K
Sbjct: 71  GEPFLRDDIFGIIEFANKIGIENINITTNGWLD-TEKIKKIIKSPLKSINISLDTLDREK 129

Query: 151 LVF 153
             F
Sbjct: 130 YKF 132


>gi|16263949|ref|NP_436741.1| pyrroloquinoline quinone biosynthesis protein PqqE [Sinorhizobium
           meliloti 1021]
 gi|32363404|sp|Q9EXU8|PQQE_RHIME RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|12007634|gb|AAG42542.1| coenzyme PQQ synthesis protein E [Sinorhizobium meliloti]
 gi|15140073|emb|CAC48601.1| probable pyrroloquinoline quinone synthesis protein E
           [Sinorhizobium meliloti 1021]
          Length = 375

 Score = 35.4 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R    C +C       Q       + ++   +  +    G        L+GGEP  + D+
Sbjct: 31  RCPLACPYCSNPIALTQA--KEELSTEEWTGVFAQAADLGVLHLH---LSGGEPAARRDL 85

Query: 102 -PLIQALNKRGFEIAVETNG 120
             L QA +  G    + T+G
Sbjct: 86  VELTQAASSLGLYTNLITSG 105


>gi|16759726|ref|NP_455343.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|16764165|ref|NP_459780.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|29142501|ref|NP_805843.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56414097|ref|YP_151172.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|167550521|ref|ZP_02344278.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|167992033|ref|ZP_02573131.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168230688|ref|ZP_02655746.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168236730|ref|ZP_02661788.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168466391|ref|ZP_02700253.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168820055|ref|ZP_02832055.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194446581|ref|YP_002040037.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194471119|ref|ZP_03077103.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194734733|ref|YP_002113894.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197247899|ref|YP_002145757.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197262997|ref|ZP_03163071.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197363019|ref|YP_002142656.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|200390525|ref|ZP_03217136.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204929942|ref|ZP_03220963.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|213861434|ref|ZP_03385904.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|238913361|ref|ZP_04657198.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|289825275|ref|ZP_06544554.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|54037810|sp|P65387|MOAA_SALTI RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|54041470|sp|P65386|MOAA_SALTY RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|81599444|sp|Q5PG37|MOAA_SALPA RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|226707379|sp|B5F079|MOAA_SALA4 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|226707384|sp|B4SZK4|MOAA_SALNS RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|226707385|sp|B5BC24|MOAA_SALPK RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|226707386|sp|B4TQU6|MOAA_SALSV RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|25304509|pir||AH0597 molybdenum cofactor biosynthesis protein A [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16419308|gb|AAL19739.1| molybdopterin biosynthesis, protein A [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16502019|emb|CAD05250.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138132|gb|AAO69703.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56128354|gb|AAV77860.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|194405244|gb|ACF65466.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194457483|gb|EDX46322.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194710235|gb|ACF89456.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195631011|gb|EDX49597.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197094496|emb|CAR60014.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197211602|gb|ACH48999.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197241252|gb|EDY23872.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197290117|gb|EDY29474.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|199602970|gb|EDZ01516.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204320936|gb|EDZ06137.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205324515|gb|EDZ12354.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205329599|gb|EDZ16363.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205334800|gb|EDZ21564.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205343086|gb|EDZ29850.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|261246060|emb|CBG23862.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992542|gb|ACY87427.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157387|emb|CBW16876.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312911824|dbj|BAJ35798.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321226375|gb|EFX51426.1| Molybdenum cofactor biosynthesis protein MoaA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322613850|gb|EFY10788.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322620349|gb|EFY17216.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622775|gb|EFY19620.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628687|gb|EFY25474.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631625|gb|EFY28381.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637151|gb|EFY33854.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641649|gb|EFY38285.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322648030|gb|EFY44500.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648488|gb|EFY44940.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654225|gb|EFY50548.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658140|gb|EFY54407.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663614|gb|EFY59816.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322670350|gb|EFY66490.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671586|gb|EFY67708.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676942|gb|EFY73009.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682867|gb|EFY78886.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686546|gb|EFY82528.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323129109|gb|ADX16539.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323194557|gb|EFZ79750.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199112|gb|EFZ84208.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202068|gb|EFZ87127.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323208907|gb|EFZ93844.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323213453|gb|EFZ98247.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215256|gb|EGA00002.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323220825|gb|EGA05263.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227118|gb|EGA11296.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229934|gb|EGA14057.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233159|gb|EGA17255.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240894|gb|EGA24936.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243211|gb|EGA27231.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248750|gb|EGA32678.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251754|gb|EGA35621.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258754|gb|EGA42411.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323260701|gb|EGA44306.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267863|gb|EGA51342.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323268753|gb|EGA52213.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 329

 Score = 35.4 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 22  DVCNFRCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 77

Query: 99  VDVPLIQALNKRG-----FEIAVETNGTIEPPQGIDW 130
            D      +   G      +IAV TNG        +W
Sbjct: 78  RD--FTDIIAAVGENDAIRQIAVTTNGYRLARDAANW 112


>gi|313679134|ref|YP_004056873.1| GTP cyclohydrolase subunit moaa [Oceanithermus profundus DSM 14977]
 gi|313151849|gb|ADR35700.1| GTP cyclohydrolase subunit MoaA [Oceanithermus profundus DSM 14977]
          Length = 325

 Score = 35.4 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 17/137 (12%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R +  C +C            G    D +   +      G    R+   TGGEPL++ ++
Sbjct: 21  RCNYHCVYC-HPLGMEMSDPPGTVTTDDVRHFLRAAASLGMDAVRF---TGGEPLVRREL 76

Query: 102 PLI--QALNKRGFE-IAVETNGTIE-------PPQGIDWICVS-PKAGCDL--KIKGGQE 148
           P +   A    G   +AV TNGT+           G+  + +S      D+   +  G E
Sbjct: 77  PEMIEAAATTPGVRDVAVTTNGTLFRRRHRELLDAGLSRVNISIDAVNPDVFRNLTRGGE 136

Query: 149 LKLVFPQVNVSPENYIG 165
           +  V+  + ++ E  + 
Sbjct: 137 IAQVWDAIELALELELH 153


>gi|213424802|ref|ZP_03357552.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|320085073|emb|CBY94860.1| Molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 340

 Score = 35.4 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 33  DVCNFRCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 88

Query: 99  VDVPLIQALNKRG-----FEIAVETNGTIEPPQGIDW 130
            D      +   G      +IAV TNG        +W
Sbjct: 89  RD--FTDIIAAVGENDAIRQIAVTTNGYRLARDAANW 123


>gi|118588651|ref|ZP_01546059.1| quinohemoprotein amine dehydrogenase, putative SAM-radical
           dependentactivating subunit [Stappia aggregata IAM
           12614]
 gi|118438637|gb|EAV45270.1| quinohemoprotein amine dehydrogenase, putative SAM-radical
           dependentactivating subunit [Stappia aggregata IAM
           12614]
          Length = 478

 Score = 35.4 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 25/83 (30%)

Query: 30  SGCNLWSGREQDRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITG-EK 83
           +GCNL            C +C     DT       +KG R   +     IE       ++
Sbjct: 110 TGCNL-----------SCTYCYKEDLDTP------SKGRRMAFETAKRSIELLLAESPDR 152

Query: 84  EGRYCVLTGGEPLLQVDVPLIQA 106
           +    V  GGEPL   ++ LI+ 
Sbjct: 153 DSYNVVFFGGEPL--SNLALIKE 173


>gi|121996882|ref|YP_001001669.1| molybdenum cofactor biosynthesis protein A [Halorhodospira
           halophila SL1]
 gi|121588287|gb|ABM60867.1| GTP cyclohydrolase subunit MoaA [Halorhodospira halophila SL1]
          Length = 340

 Score = 35.4 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 17/91 (18%)

Query: 20  AGRVAVFCRFSGCNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           +GR   + R S          DR   +C +C  D         +    ++++L  +    
Sbjct: 12  SGRPIDYLRLS--------VTDRCDLRCLYCMGD---AVRFVPRSEVLSLEELEQVAAAF 60

Query: 78  WITGEKEGRYCVLTGGEPLLQVD-VPLIQAL 107
              G ++ R   +TGGEPLL+   + L + L
Sbjct: 61  VSLGVRKIR---ITGGEPLLRRGVLALARRL 88


>gi|255013975|ref|ZP_05286101.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 2_1_7]
          Length = 301

 Score = 35.4 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 36  SGREQDRLSAQCR-FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           + R   R   +C   C T         G  Y++D++   IE++ +  ++        GGE
Sbjct: 76  TDRSLCRTCGRCAEVCPT---LAMEMSGREYSIDEVMREIEKETVFMDRSEGGVTFCGGE 132

Query: 95  PLLQV--DVPLIQALNKRGFEIAVET 118
           PL      V L+      G   AV+T
Sbjct: 133 PLSHPSDLVALLDRCGALGIHRAVDT 158


>gi|322419295|ref|YP_004198518.1| Radical SAM domain-containing protein [Geobacter sp. M18]
 gi|320125682|gb|ADW13242.1| Radical SAM domain protein [Geobacter sp. M18]
          Length = 447

 Score = 35.4 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 21/99 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C  +    +G        D L   +  + I+   +       
Sbjct: 94  CNL-----------NCAYC-FEEDFRRGQYMSEATADLLVGTLARERISRGWD-LTVSFY 140

Query: 92  GGEPLLQVDV------PLIQALNKRG--FEIAVETNGTI 122
           GGEPLL  D+      PL+      G  +   + TNGT+
Sbjct: 141 GGEPLLSRDLMRRISQPLLAEARSHGVKYGFNLITNGTL 179


>gi|126699320|ref|YP_001088217.1| molybdenum cofactor biosynthesis protein [Clostridium difficile
           630]
 gi|254975350|ref|ZP_05271822.1| molybdenum cofactor biosynthesis protein [Clostridium difficile
           QCD-66c26]
 gi|255092740|ref|ZP_05322218.1| molybdenum cofactor biosynthesis protein [Clostridium difficile CIP
           107932]
 gi|255306734|ref|ZP_05350905.1| molybdenum cofactor biosynthesis protein [Clostridium difficile
           ATCC 43255]
 gi|255314479|ref|ZP_05356062.1| molybdenum cofactor biosynthesis protein [Clostridium difficile
           QCD-76w55]
 gi|255517156|ref|ZP_05384832.1| molybdenum cofactor biosynthesis protein [Clostridium difficile
           QCD-97b34]
 gi|255650260|ref|ZP_05397162.1| molybdenum cofactor biosynthesis protein [Clostridium difficile
           QCD-37x79]
 gi|260683379|ref|YP_003214664.1| molybdenum cofactor biosynthesis protein [Clostridium difficile
           CD196]
 gi|260686974|ref|YP_003218107.1| molybdenum cofactor biosynthesis protein [Clostridium difficile
           R20291]
 gi|306520235|ref|ZP_07406582.1| molybdenum cofactor biosynthesis protein A [Clostridium difficile
           QCD-32g58]
 gi|115250757|emb|CAJ68581.1| Molybdenum cofactor biosynthesis protein MoaA [Clostridium
           difficile]
 gi|260209542|emb|CBA63138.1| molybdenum cofactor biosynthesis protein [Clostridium difficile
           CD196]
 gi|260212990|emb|CBE04301.1| molybdenum cofactor biosynthesis protein [Clostridium difficile
           R20291]
          Length = 319

 Score = 35.4 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           D+ + +C +C   D  F   +       + +    +I+     G  + R+   TGGEPLL
Sbjct: 18  DKCNLRCVYCMPPDVKF--DKNYINENLSFEDYKFIIKAMAEQGITKIRF---TGGEPLL 72

Query: 98  QVDV-PLIQALNKR 110
              +  LI+   + 
Sbjct: 73  YPKLNELIKFTKEE 86


>gi|32267330|ref|NP_861362.1| hypothetical protein HH1831 [Helicobacter hepaticus ATCC 51449]
 gi|32263383|gb|AAP78428.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 310

 Score = 35.4 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQV-DVPLI 104
           C +C+        +     +VD++ + ++   +    +     LT  GEP L      LI
Sbjct: 32  CVYCELQKAKSVESMNAVVSVDEVVNAVQRAIVA--HKCDVLTLTANGEPTLYPYLKELI 89

Query: 105 QALNK 109
            AL  
Sbjct: 90  SALKD 94


>gi|307132435|ref|YP_003884451.1| putative oxidoreductase [Dickeya dadantii 3937]
 gi|306529964|gb|ADM99894.1| predicted oxidoreductase [Dickeya dadantii 3937]
          Length = 379

 Score = 35.4 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 48/142 (33%), Gaps = 25/142 (17%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    LADL  +  + G +      + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVAHLLADLDADLPLAGGRPLHSIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPP-------QGIDWICV- 133
           GG P L +    +Q L              EI +E N GT+E          GI+ I + 
Sbjct: 66  GGTPSL-LSAEAMQQLLDGVRARLSLPAEAEITMEANPGTVEADRFSGYQRAGINRISIG 124

Query: 134 ----SP-KAGCDLKIKGGQELK 150
               SP K     +I G +E K
Sbjct: 125 VQSFSPDKLTRLGRIHGPEEAK 146


>gi|15897469|ref|NP_342074.1| coenzyme PQQ synthesis protein E (pqqE-1) [Sulfolobus solfataricus
           P2]
 gi|284175911|ref|ZP_06389880.1| coenzyme PQQ synthesis protein E (pqqE-1) [Sulfolobus solfataricus
           98/2]
 gi|6015925|emb|CAB57752.1| coenzyme PQQ synthesis protein [Sulfolobus solfataricus P2]
 gi|13813710|gb|AAK40864.1| Coenzyme PQQ synthesis protein E (pqqE-1) [Sulfolobus solfataricus
           P2]
 gi|261602209|gb|ACX91812.1| Radical SAM domain protein [Sulfolobus solfataricus 98/2]
          Length = 361

 Score = 35.4 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 14/75 (18%)

Query: 42  RLSAQCRFC-----DTDFVGIQGTKGGR-------YNVDQLADLIEEQWITGEKEGRY-- 87
           + S QC +C     D  F         R        N+ +   +I +     EK      
Sbjct: 16  KCSQQCIYCHNPPKDLKFYIADKVPKPRSVIEMNELNLSEWISVINQIKRLDEKYEGIMD 75

Query: 88  CVLTGGEPLLQVDVP 102
            V+TGGEPLL+ D+ 
Sbjct: 76  VVITGGEPLLRSDLE 90


>gi|28557069|dbj|BAC57533.1| pyruvate formate-lyase activating enzyme [Clostridium limosum]
          Length = 194

 Score = 35.4 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVET 118
           G  Y    L   +       +K G     +GG+P++Q +  LI  L    +      ++T
Sbjct: 1   GTEYTPGALLKKLIRFKPYFDKSGGGVTFSGGDPIMQPEF-LIDCLKLCKENNIHTTIDT 59

Query: 119 NG 120
           +G
Sbjct: 60  SG 61


>gi|150007436|ref|YP_001302179.1| pyruvate-formate lyase-activating enzyme [Parabacteroides
           distasonis ATCC 8503]
 gi|149935860|gb|ABR42557.1| pyruvate-formate lyase-activating enzyme [Parabacteroides
           distasonis ATCC 8503]
          Length = 301

 Score = 35.4 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 36  SGREQDRLSAQCR-FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
           + R   R   +C   C T         G  Y++D++   IE++ +  ++        GGE
Sbjct: 76  TDRSLCRTCGRCAEVCPT---LAMEMSGREYSIDEVMREIEKETVFMDRSEGGVTFCGGE 132

Query: 95  PLLQV--DVPLIQALNKRGFEIAVET 118
           PL      V L+    + G   AV+T
Sbjct: 133 PLSHPSDLVALLDRCGELGIHRAVDT 158


>gi|167039016|ref|YP_001662001.1| radical SAM domain-containing protein [Thermoanaerobacter sp. X514]
 gi|300913395|ref|ZP_07130712.1| Radical SAM domain protein [Thermoanaerobacter sp. X561]
 gi|307723590|ref|YP_003903341.1| Radical SAM domain-containing protein [Thermoanaerobacter sp. X513]
 gi|166853256|gb|ABY91665.1| Radical SAM domain protein [Thermoanaerobacter sp. X514]
 gi|300890080|gb|EFK85225.1| Radical SAM domain protein [Thermoanaerobacter sp. X561]
 gi|307580651|gb|ADN54050.1| Radical SAM domain protein [Thermoanaerobacter sp. X513]
          Length = 427

 Score = 35.4 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 17/95 (17%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              CNL           +           +        V ++   I+E  I         
Sbjct: 100 TQRCNLNCPTCFTFSPKR----------NKLNDMPTEKVKEVLRKIKEFGINE------V 143

Query: 89  VLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           + +GGEP L+ D + +++   K    + V TNGT+
Sbjct: 144 IFSGGEPFLREDFIKILEESKKLSLSVVVLTNGTL 178


>gi|78184186|ref|YP_376621.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
           CC9902]
 gi|123743556|sp|Q3AZA0|RLMN_SYNS9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|78168480|gb|ABB25577.1| conserved hypothetical protein [Synechococcus sp. CC9902]
          Length = 351

 Score = 35.4 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 9/77 (11%)

Query: 28  RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
           R + C       Q      CRFC T   G+Q          ++ D +       ++   +
Sbjct: 101 RLTVC----ISSQVGCPMACRFCATGKSGLQ----RSLATHEIVDQVLSVREAMDRRPSH 152

Query: 88  CVLTG-GEPLLQVDVPL 103
            V  G GEPLL  +  L
Sbjct: 153 VVFMGMGEPLLNSEAVL 169


>gi|332026222|gb|EGI66364.1| Molybdenum cofactor biosynthesis protein 1 [Acromyrmex echinatior]
          Length = 571

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 28/115 (24%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C +C     G++ TK  G    +++  + +     G ++ R   L
Sbjct: 65  CNL-----------RCTYC-MPAEGVKLTKKEGILRTNEIIQIADLFVKEGVRKIR---L 109

Query: 91  TGGEPLLQVDVP----LIQALNKRGFEIAVETNG---TIEPP----QGIDWICVS 134
           TGGEP ++ D+      ++ L     ++A+ TNG   T + P     G+D + +S
Sbjct: 110 TGGEPTIRKDIIDIVGQLKQLRDLD-QVAITTNGLTLTRQLPALQKAGLDALNIS 163


>gi|319744473|gb|EFV96830.1| radical SAM superfamily protein [Streptococcus agalactiae ATCC
           13813]
          Length = 438

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 50/157 (31%), Gaps = 14/157 (8%)

Query: 49  FCDTD--FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQ 105
           +CD    F  +   +       +  + I  Q    +       + GGEP    D+  L+ 
Sbjct: 115 YCDLKCGFCFLANREDRNAKPAKDWERILRQ--AKDNGVLSVSILGGEPTRYFDIDNLLI 172

Query: 106 ALNKRGFEIAVETNG------TIEPPQGIDWICVSPKAGC-DLKIKGGQELKLVFPQVNV 158
           A  +   +  + TN       T+E      +I   P      L  K   EL  V P   +
Sbjct: 173 ACEELKIKTTITTNAQLIKKSTVEILAKSKYIT--PVLSLQTLDSKLNFELMGVRPDRQI 230

Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
               Y     ++  +  +      E     + +C +N
Sbjct: 231 KLAKYFKDVGKKCRINAVYTKQSYEQIIELVDFCIEN 267


>gi|224437173|ref|ZP_03658154.1| molybdenum cofactor biosynthesis protein A [Helicobacter cinaedi
           CCUG 18818]
 gi|313143638|ref|ZP_07805831.1| molybdenum cofactor biosynthesis protein A [Helicobacter cinaedi
           CCUG 18818]
 gi|313128669|gb|EFR46286.1| molybdenum cofactor biosynthesis protein A [Helicobacter cinaedi
           CCUG 18818]
          Length = 324

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 46  QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           +C++C  DT    I  T         L  ++    +  +   +   +TGGEPLL+ D+
Sbjct: 24  RCQYCMPDTPEDFIDKT------ALPLPKMLIFIKLAIDNGIKKIRITGGEPLLRADL 75


>gi|209524545|ref|ZP_03273093.1| Radical SAM domain protein [Arthrospira maxima CS-328]
 gi|209495003|gb|EDZ95310.1| Radical SAM domain protein [Arthrospira maxima CS-328]
          Length = 347

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           ++    C+ C        G K       ++   ++++    G K+     +TGGEPLL  
Sbjct: 13  NKCMLACKHC----CFDAGEKMLPELKKERWMQILKQGKNLGVKD---IDITGGEPLLYK 65

Query: 100 -DVPLIQALNKRGFEIAVETNG 120
               LI       + + ++TNG
Sbjct: 66  GLDHLINYAVNLEYNVTLQTNG 87


>gi|154498075|ref|ZP_02036453.1| hypothetical protein BACCAP_02056 [Bacteroides capillosus ATCC
           29799]
 gi|150273065|gb|EDN00222.1| hypothetical protein BACCAP_02056 [Bacteroides capillosus ATCC
           29799]
          Length = 460

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 26/112 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYNVD-QLADLIEEQWITGEKEGRYCV 89
           CNL           +C++C   F        G R  +D + A    +  I    + R   
Sbjct: 113 CNL-----------RCKYC---FASTGDFGTGHRMTMDFETAKRAIDFVIERSGKRRNIE 158

Query: 90  LT--GGEPLLQVDVP--------LIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           +   GGEPL+ +D           I+  + + F   + TNG +   + I++I
Sbjct: 159 VDFFGGEPLMAMDTVKRTVEYARSIEKEHGKCFRFTITTNGVLLNDENIEYI 210


>gi|301309607|ref|ZP_07215549.1| putative radical SAM domain protein [Bacteroides sp. 20_3]
 gi|300832696|gb|EFK63324.1| putative radical SAM domain protein [Bacteroides sp. 20_3]
          Length = 321

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 19/110 (17%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVET 118
           +K     ++++ +LI++  I G         +GGEP L  D+  ++    ++G  +AV T
Sbjct: 28  SKNHMMPLEKVKELIDDVDILG---CEQISFSGGEPFLHKDLVKMVAYAYRKGMRVAVYT 84

Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQEL-----KLVFPQVNVSPENY 163
           +G               K    + IK   EL     K++      +PE Y
Sbjct: 85  SGIYN----------DSKGYSAIPIKHLMELLPYSCKIIVNYEASTPETY 124


>gi|299530509|ref|ZP_07043929.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni S44]
 gi|298721485|gb|EFI62422.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni S44]
          Length = 369

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 20/104 (19%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL------IEEQWITGEKEGRYCV 89
               Q   +  CRFC T   G QG        + LA L      + +++ T ++     V
Sbjct: 100 CVSSQAGCAVGCRFCST---GHQGFSRNLNTGEILAQLWYAEHSLRKRFGTEDRIISNVV 156

Query: 90  LTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123
           + G GEPL Q    L+ AL       G+      + V T+G + 
Sbjct: 157 MMGMGEPL-QNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVP 199


>gi|264679426|ref|YP_003279333.1| radical SAM enzyme, Cfr family [Comamonas testosteroni CNB-2]
 gi|262209939|gb|ACY34037.1| radical SAM enzyme, Cfr family [Comamonas testosteroni CNB-2]
          Length = 369

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 20/104 (19%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL------IEEQWITGEKEGRYCV 89
               Q   +  CRFC T   G QG        + LA L      + +++ T ++     V
Sbjct: 100 CVSSQAGCAVGCRFCST---GHQGFSRNLNTGEILAQLWYAEHSLRKRFGTEDRIISNVV 156

Query: 90  LTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123
           + G GEPL Q    L+ AL       G+      + V T+G + 
Sbjct: 157 MMGMGEPL-QNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVP 199


>gi|257057375|ref|YP_003135207.1| GTP cyclohydrolase subunit MoaA [Saccharomonospora viridis DSM
           43017]
 gi|256587247|gb|ACU98380.1| GTP cyclohydrolase subunit MoaA [Saccharomonospora viridis DSM
           43017]
          Length = 339

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           D+ + +C +C     G++     R    D++  LI+              LTGGEPLL+ 
Sbjct: 30  DKCNLRCTYC-MPAEGLEWMPDQRLLTDDEIVRLID--IAVRLLGVTDVRLTGGEPLLRP 86

Query: 100 DVP-L---IQALNKRGFEIAVETNG 120
            +  L   I AL  R   +A+ TNG
Sbjct: 87  RLEGLVARIAALRPRP-RLAMTTNG 110


>gi|255655733|ref|ZP_05401142.1| molybdenum cofactor biosynthesis protein [Clostridium difficile
           QCD-23m63]
 gi|296451740|ref|ZP_06893471.1| molybdenum cofactor biosynthesis protein A [Clostridium difficile
           NAP08]
 gi|296878984|ref|ZP_06902982.1| molybdenum cofactor biosynthesis protein A [Clostridium difficile
           NAP07]
 gi|296259441|gb|EFH06305.1| molybdenum cofactor biosynthesis protein A [Clostridium difficile
           NAP08]
 gi|296430011|gb|EFH15860.1| molybdenum cofactor biosynthesis protein A [Clostridium difficile
           NAP07]
          Length = 319

 Score = 35.0 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           D+ + +C +C   D  F   +       + +    +I+     G  + R+   TGGEPLL
Sbjct: 18  DKCNLRCVYCMPPDVKF--DKNYINENLSFEDYKFIIKAMAEQGITKVRF---TGGEPLL 72

Query: 98  QVDV-PLIQALNKR 110
              +  LI+   + 
Sbjct: 73  YPKLNELIKFTKEE 86


>gi|187933498|ref|YP_001885706.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum B str. Eklund 17B]
 gi|187721651|gb|ACD22872.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum B str. Eklund 17B]
          Length = 300

 Score = 35.0 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
                +D++   + +  I   K G    L+GGE L   D  + L++   +     A+ET+
Sbjct: 103 AKEMTIDEVFKEVIKDEIFYSKSGGGVTLSGGEVLSNGDFALDLLKKCKENYINTAIETS 162

Query: 120 G 120
           G
Sbjct: 163 G 163


>gi|15669011|ref|NP_247815.1| molybdenum cofactor biosynthesis protein A [Methanocaldococcus
           jannaschii DSM 2661]
 gi|2496130|sp|Q58234|MOAA_METJA RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|1591511|gb|AAB98823.1| molybdenum cofactor biosynthesis protein (moaA) [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 298

 Score = 35.0 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 18/91 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           QC +C     G           +++  + +     G K+ +   ++
Sbjct: 20  CNL-----------QCFYC--HREGHDSNNDRYMTPEEIGIIAKTSTKFGVKKIK---IS 63

Query: 92  GGEPLLQVDV-PLIQALNKRGFE-IAVETNG 120
           GGEPLL+ DV  +I+ +     + I++ TNG
Sbjct: 64  GGEPLLRKDVCEIIENIKDERIKDISLTTNG 94


>gi|304310967|ref|YP_003810565.1| Molybdenum cofactor biosynthesis protein A [gamma proteobacterium
           HdN1]
 gi|301796700|emb|CBL44912.1| Molybdenum cofactor biosynthesis protein A [gamma proteobacterium
           HdN1]
          Length = 332

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 13/86 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV---LTGGEPLL 97
           DR   +C +C          +       Q+  L E Q I     G       LTGGEPL+
Sbjct: 24  DRCDFRCVYC-------MSEQMQFLPRSQVLSLEEMQTIAAVFVGLGVTKIRLTGGEPLV 76

Query: 98  QVD-VPLIQALNK-RGF-EIAVETNG 120
           + D V L++ L++  G  EI + TNG
Sbjct: 77  RKDCVSLVRGLSELEGLKEITLTTNG 102


>gi|255327132|ref|ZP_05368207.1| putative oxygen-independent coproporphyrinogen III oxidase [Rothia
           mucilaginosa ATCC 25296]
 gi|255295750|gb|EET75092.1| putative oxygen-independent coproporphyrinogen III oxidase [Rothia
           mucilaginosa ATCC 25296]
          Length = 428

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 20/110 (18%)

Query: 30  SGC---NLWSGREQDRLSAQCRFCDTD-FVGIQGTKG---GRYNVDQLADLI-----EEQ 77
           +GC   +          S +C +CD + +       G   G Y  D +A+++      E 
Sbjct: 22  AGCETRDFSLYVHIPFCSVRCGYCDFNTYATEDFGDGIGLGTYAADAIAEILFAARTLEA 81

Query: 78  WITGEKEGRYCVLTGGEPLLQVDVPLIQALNK--------RGFEIAVETN 119
               ++        GG P       L++ L           G E+  E N
Sbjct: 82  SGVAKRPMHTVFFGGGTPTKLPARDLVRILQAAIDVFGLVEGAEVTTEAN 131


>gi|310830014|ref|YP_003962371.1| hypothetical protein ELI_4474 [Eubacterium limosum KIST612]
 gi|308741748|gb|ADO39408.1| hypothetical protein ELI_4474 [Eubacterium limosum KIST612]
          Length = 361

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 16/101 (15%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL       R +  C             +      ++   + EE    G        L 
Sbjct: 72  CNLHCKGCYARANGICS----------AGEEKALTAEEWQKIFEEAAGIGVSFNL---LA 118

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           GGEPL++ D +     + +  F +   TNG +   +  D+ 
Sbjct: 119 GGEPLMRRDVLEAAACVKEMVFPVF--TNGLLIDEKTADFF 157


>gi|301310562|ref|ZP_07216501.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
 gi|300832136|gb|EFK62767.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
          Length = 301

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118
           G  Y++D++   IE++ +  ++        GGEPL      V L+      G   AV+T
Sbjct: 100 GREYSIDEVMREIEKETVFMDRSEGGVTFCGGEPLSHPSDLVALLDRCGALGIHRAVDT 158


>gi|298375410|ref|ZP_06985367.1| radical SAM domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298267910|gb|EFI09566.1| radical SAM domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 301

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118
           G  Y++D++   IE++ +  ++        GGEPL      V L+      G   AV+T
Sbjct: 100 GREYSIDEVMREIEKETVFMDRSEGGVTFCGGEPLSHPSDLVALLDRCGALGIHRAVDT 158


>gi|295106794|emb|CBL04337.1| Predicted Fe-S oxidoreductases [Gordonibacter pamelaeae 7-10-1-b]
          Length = 452

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 18/91 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C         T  G   + +++D + +             +T
Sbjct: 115 CNL-----------HCPVC----FMSAETGEGDPTLAEISD-MYDVIANAVGTDGAVQIT 158

Query: 92  GGEPLLQVDVP-LIQALNKRGFE-IAVETNG 120
           GGEP  + D+P +I+   ++GF  I V TNG
Sbjct: 159 GGEPTCRKDLPEIIRMGREKGFWGIEVNTNG 189


>gi|229175442|ref|ZP_04302955.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus MM3]
 gi|228608050|gb|EEK65359.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus MM3]
          Length = 339

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 27/145 (18%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L +     G ++ R   LTG
Sbjct: 24  DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKLFVSIGVRKIR---LTG 76

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151
           GEPLL+ D+  LI  L      + +E  G ++     + I ++ K    LK  G    ++
Sbjct: 77  GEPLLRKDLTKLIARL------VKIE--GLVDIGLTTNAIHLT-KQAKALKEAGLH--RV 125

Query: 152 VFPQVNVSPENYIGFDFERFSLQPM 176
                 +  + +   +    + +P+
Sbjct: 126 NVSLDAIDDDVFKDINGRNINTKPV 150


>gi|224024216|ref|ZP_03642582.1| hypothetical protein BACCOPRO_00939 [Bacteroides coprophilus DSM
           18228]
 gi|224017438|gb|EEF75450.1| hypothetical protein BACCOPRO_00939 [Bacteroides coprophilus DSM
           18228]
          Length = 366

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 66/188 (35%), Gaps = 39/188 (20%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-----YNVDQLADLIEEQWITGEK 83
            + CNL           +C +C   ++  +G +        Y+ D +   +    ++   
Sbjct: 11  LTACNL-----------KCNYC---YIIQEGRRKNEKAIFQYSPDTIGKALS---VSRLG 53

Query: 84  EGRYCVLTG-GEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDL 141
              +  +T  GE  +  ++P I + + K+G  I + TNGT+          +S       
Sbjct: 54  GISFISMTASGETFISPELPFIAKEILKQGHFINITTNGTLRKQ-------ISFFLEMTK 106

Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW--- 198
           +      +   F  + +  +N I   F    +    G  +    NL   Y    P W   
Sbjct: 107 EYHEHIHISFSFHFLELKRKNLIETFFSNIKMVKDSGCSILLQINLCDEYI---PYWDEI 163

Query: 199 -RLSVQTH 205
            +LS+  H
Sbjct: 164 KKLSI-LH 170


>gi|221066031|ref|ZP_03542136.1| radical SAM enzyme, Cfr family [Comamonas testosteroni KF-1]
 gi|220711054|gb|EED66422.1| radical SAM enzyme, Cfr family [Comamonas testosteroni KF-1]
          Length = 373

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 20/104 (19%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL------IEEQWITGEKEGRYCV 89
               Q   +  CRFC T   G QG        + LA L      + +++ T ++     V
Sbjct: 104 CVSSQAGCAVGCRFCST---GHQGFSRNLDTGEILAQLWYAEHSLRKRFGTEDRIISNVV 160

Query: 90  LTG-GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123
           + G GEPL Q    L+ AL       G+      + V T+G + 
Sbjct: 161 MMGMGEPL-QNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVP 203


>gi|302535264|ref|ZP_07287606.1| predicted protein [Streptomyces sp. C]
 gi|302444159|gb|EFL15975.1| predicted protein [Streptomyces sp. C]
          Length = 338

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R + +C  C   F G +      +  +Q  +L+    +  E       L GGEP +  ++
Sbjct: 59  RCNFECLHC---FHGTRLQHADAFTAEQAVNLL--TLMREEYGTEAVTLLGGEPFVYKEL 113

Query: 102 PLI--QALNKRGFEIAVETNG 120
             +   A  + G ++ + TNG
Sbjct: 114 ARVVRHAKQELGLQVEICTNG 134


>gi|307152948|ref|YP_003888332.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306983176|gb|ADN15057.1| Radical SAM domain protein [Cyanothece sp. PCC 7822]
          Length = 459

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 9/91 (9%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL                 T+           +      + + +  +  E E +   ++
Sbjct: 106 CNLSCPICYAESG-------TEEFFTGSDLPRVHRSLAQIETMLDAIVANEGEPQVVQIS 158

Query: 92  GGEPLLQVDVPLIQALNKRG--FEIAVETNG 120
           GGEP +  +   I  L K      + + TNG
Sbjct: 159 GGEPTIHPEFFKILDLAKSKPIKHLMINTNG 189


>gi|14520330|ref|NP_125805.1| molybdenum cofactor biosynthesis protein A [Pyrococcus abyssi GE5]
 gi|18203544|sp|Q9V2G2|MOAA_PYRAB RecName: Full=Probable molybdenum cofactor biosynthesis protein A
 gi|5457545|emb|CAB49036.1| moaA molybdenum cofactor biosynthesis protein [Pyrococcus abyssi
           GE5]
          Length = 306

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 18/91 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C       Q         +++  ++    I      +   LT
Sbjct: 21  CNL-----------NCFYC---HREGQLDGERTMKPEEIERIV---RIASRLGIKKVKLT 63

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
           GGEP ++ D+  +I+ +     ++++ TNGT
Sbjct: 64  GGEPTIRKDIVEIIRRIRPYVVDLSLTTNGT 94


>gi|150016861|ref|YP_001309115.1| molybdenum cofactor biosynthesis protein A [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903326|gb|ABR34159.1| molybdenum cofactor biosynthesis protein A [Clostridium
           beijerinckii NCIMB 8052]
          Length = 324

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 19/107 (17%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR + +C +C      +          D++    +++       +       +TGGEPL+
Sbjct: 18  DRCNLRCVYC------MPECGIENLEHDEILTFKEIMLIVKTVSQLGIHKIKITGGEPLV 71

Query: 98  QVDV-PLIQALNKR-GF-EIAVETNGTIE-------PPQGIDWICVS 134
           +  +  L++ +    G  EI + TNG +           G+D + +S
Sbjct: 72  RKGIVNLVRRIKDIDGIEEITMTTNGVLFGDMADSLAEAGLDSVNIS 118


>gi|331268375|ref|YP_004394867.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum BKT015925]
 gi|329124925|gb|AEB74870.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum BKT015925]
          Length = 164

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 20/95 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           R  +F   SGC+             C  C    +      G   ++  +   IE      
Sbjct: 20  RSTLF--LSGCH-----------HNCNECQNKHMQ-DFHYGEDIDIKDILSRIESNIPL- 64

Query: 82  EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEI 114
               +    +GGEPL Q      L + + ++  +I
Sbjct: 65  ---IKGVTFSGGEPLEQSKGLTLLAKKIKEQNLDI 96


>gi|308176262|ref|YP_003915668.1| molybdenum cofactor biosynthesis protein A [Arthrobacter
           arilaitensis Re117]
 gi|307743725|emb|CBT74697.1| molybdenum cofactor biosynthesis protein A [Arthrobacter
           arilaitensis Re117]
          Length = 346

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 33/147 (22%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  F      +    + +++  L       G  + R   LTG
Sbjct: 26  DRCNFRCVYCMPKEIFGRDFQFR----ERSELLSFEEIERLARISVSLGVTKLR---LTG 78

Query: 93  GEPLLQVDV-PLIQALNK----RGFEI--AVETNGTIEP-------PQGIDWICVSPKAG 138
           GEPLL+  +  L+  L+      G  I  A+ TNG+  P         G++ + +S  + 
Sbjct: 79  GEPLLRRGIVDLVAMLSNLRTPEGKRIDLAMTTNGSALPVLAPALKEAGLNRVTISLDSL 138

Query: 139 CDLKIKGGQELKL----VFPQVNVSPE 161
            D K K   ++      V   + V+ E
Sbjct: 139 DDEKFKAINDVNFPVSKVLEAIQVARE 165


>gi|262042607|ref|ZP_06015763.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040041|gb|EEW41156.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 378

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L DL  +      +E     + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLQADAHYAQGREIGTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L            G EI +E N GT+E  + +D+
Sbjct: 66  GGTPSL-LSGPAMQTLLDGVRACLPLAAGAEITMEANPGTVEADRFVDY 113


>gi|238023391|ref|YP_002907624.1| Elongator protein 3/MiaB/NifB [Burkholderia glumae BGR1]
 gi|237880444|gb|ACR32774.1| Elongator protein 3/MiaB/NifB [Burkholderia glumae BGR1]
          Length = 486

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 15/76 (19%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              CNL            C  C   ++           +D+L   I+             
Sbjct: 81  TQRCNL-----------DCTLC---YLSENAEAVKDIPLDELFARID-TIFASYGPNTDV 125

Query: 89  VLTGGEPLLQVDVPLI 104
            +TGGEP L+    L+
Sbjct: 126 QVTGGEPTLRDRGELL 141


>gi|237730758|ref|ZP_04561239.1| molybdenum cofactor biosynthesis protein A [Citrobacter sp. 30_2]
 gi|226906297|gb|EEH92215.1| molybdenum cofactor biosynthesis protein A [Citrobacter sp. 30_2]
          Length = 351

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+
Sbjct: 44  DVCNFRCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLR 99

Query: 99  VD-VPLIQALNKRG--FEIAVETNG 120
            D   +I A+ +     +IAV TNG
Sbjct: 100 RDFTDIIAAVRENDAIRQIAVTTNG 124


>gi|52548911|gb|AAU82760.1| moaA/nifB/pqqE family protein [uncultured archaeon GZfos19C8]
          Length = 511

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 13/103 (12%)

Query: 31  GCNLWSGREQDRLSA----------QCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
           GC    G   +  S+          +C   C T F     +        +  + + +   
Sbjct: 89  GCPFDCGLCPEHKSSTMLALIDLTNRCNQRCPTCFANAAVSGYLYEPTMEQLEEMMKMLR 148

Query: 80  TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETNG 120
           +           GGEP ++   V +++     GF ++ V TNG
Sbjct: 149 SEVPPCPAVQFAGGEPTIRDGFVDIVKMARDLGFSQVQVATNG 191


>gi|213024146|ref|ZP_03338593.1| molybdenum cofactor biosynthesis protein A [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 116

 Score = 35.0 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 13/92 (14%)

Query: 46  QCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
           +C +C  D  +     T  G   VD++  +       G ++ R   LTGGEP L+ D   
Sbjct: 3   RCTYCLPD-GYKPGGVTNNGFLTVDEIRRVTRAFASLGTEKVR---LTGGEPSLRRD--F 56

Query: 104 IQALNKRG-----FEIAVETNGTIEPPQGIDW 130
              +   G      +IAV TNG        +W
Sbjct: 57  TDIIAAVGENDAIRQIAVTTNGYRLARDAANW 88


>gi|153953013|ref|YP_001393778.1| Fe-S oxidoreductase [Clostridium kluyveri DSM 555]
 gi|219853669|ref|YP_002470791.1| hypothetical protein CKR_0326 [Clostridium kluyveri NBRC 12016]
 gi|146345894|gb|EDK32430.1| Predicted Fe-S oxidoreductase [Clostridium kluyveri DSM 555]
 gi|219567393|dbj|BAH05377.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 330

 Score = 35.0 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 7/78 (8%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104
           +C+ C   +        G  N  +   LIE+    G    +  + +GGEPL++ D+  LI
Sbjct: 14  RCKHC---YRNAGSEVEGELNTLEAKKLIEDIKKAG---FKIMIFSGGEPLMRKDIFELI 67

Query: 105 QALNKRGFEIAVETNGTI 122
           +   K      + +NGT+
Sbjct: 68  EHAAKCKLRPVLGSNGTL 85


>gi|117619818|ref|YP_855387.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561225|gb|ABK38173.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 381

 Score = 35.0 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 12/105 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L DL ++      +      + 
Sbjct: 6   PLSLYIHVPWCVQKCPYCDFNSHAQKGELPHLEYVAALLEDLEQDLHWAQGRPLSSIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQ 126
           GG P L + V  +QAL              EI +E N GT+E  +
Sbjct: 66  GGTPSL-LSVEAMQALLDGVRARIELTADCEITMEANPGTVEADK 109


>gi|78355756|ref|YP_387205.1| GTP cyclohydrolase subunit MoaA [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218161|gb|ABB37510.1| GTP cyclohydrolase subunit MoaA [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 353

 Score = 35.0 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 19/95 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL            C  CD   F+            +++  L++     G ++ R   L
Sbjct: 43  CNLRCMY--------CWTCDGLSFIPHDS----ILKYEEMLQLVDAAVGMGVEKVR---L 87

Query: 91  TGGEPLLQVDVP-LIQALNKRG--FEIAVETNGTI 122
           TGGEP ++ D   L+++L +R    ++ + TN T+
Sbjct: 88  TGGEPFVRKDFLFLVESLVRRHPSLDVRITTNATL 122


>gi|328544106|ref|YP_004304215.1| Quinohemoprotein amine dehydrogenase, putative SAM-radical
           dependentactivating subunit [Polymorphum gilvum
           SL003B-26A1]
 gi|326413849|gb|ADZ70912.1| Quinohemoprotein amine dehydrogenase, putative SAM-radical
           dependentactivating subunit [Polymorphum gilvum
           SL003B-26A1]
          Length = 478

 Score = 35.0 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 25/82 (30%)

Query: 30  SGCNLWSGREQDRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITG-EK 83
           +GCNL            C +C     DT       +KG R  ++     IE       ++
Sbjct: 110 TGCNL-----------SCTYCYKEDLDTP------SKGRRMELETAKRSIELLLAESPDR 152

Query: 84  EGRYCVLTGGEPLLQVDVPLIQ 105
           +    V  GGEPL   ++ LI+
Sbjct: 153 DSYNIVFFGGEPL--SNLALIR 172


>gi|319646960|ref|ZP_08001188.1| hypothetical protein HMPREF1012_02225 [Bacillus sp. BT1B_CT2]
 gi|317391019|gb|EFV71818.1| hypothetical protein HMPREF1012_02225 [Bacillus sp. BT1B_CT2]
          Length = 373

 Score = 35.0 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        V  L   ++E         R   +TGGEP+L +      
Sbjct: 45  RCEHCAVGYT-LQTKDPDALPVSLLLKRLDEI-----PRLRSLSITGGEPMLSLKSVKEY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
            VPL++  ++RG    + +N T++ 
Sbjct: 99  VVPLLKYAHERGVRTQINSNLTLDI 123


>gi|302539601|ref|ZP_07291943.1| L-lysine 2,3-aminomutase, putative/acetyltransferase, GNAT family
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302457219|gb|EFL20312.1| L-lysine 2,3-aminomutase, putative/acetyltransferase, GNAT family
           [Streptomyces himastatinicus ATCC 53653]
          Length = 362

 Score = 35.0 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 10/77 (12%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE--KEGRYCVLTGGEPLLQVDV 101
           +A CR+C      I+G         +  + I     T    ++ R  ++TGG+PL+ +D 
Sbjct: 86  AAHCRWC------IRGQYDTTTLSREDLEFIARYCGTAPENQDVREVLVTGGDPLILIDR 139

Query: 102 P--LIQALNKRGFEIAV 116
              L+ AL +   ++ +
Sbjct: 140 IEWLLDALEEHAPQVEI 156


>gi|52079259|ref|YP_078050.1| hypothetical protein BL03114 [Bacillus licheniformis ATCC 14580]
 gi|52784624|ref|YP_090453.1| hypothetical protein BLi00825 [Bacillus licheniformis ATCC 14580]
 gi|52002470|gb|AAU22412.1| conserved protein YfkA [Bacillus licheniformis ATCC 14580]
 gi|52347126|gb|AAU39760.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 373

 Score = 35.0 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q        V  L   ++E         R   +TGGEP+L +      
Sbjct: 45  RCEHCAVGYT-LQTKDPDALPVSLLLKRLDEI-----PRLRSLSITGGEPMLSLKSVKEY 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
            VPL++  ++RG    + +N T++ 
Sbjct: 99  VVPLLKYAHERGVRTQINSNLTLDI 123


>gi|325524720|gb|EGD02707.1| coproporphyrinogen III oxidase [Burkholderia sp. TJI49]
          Length = 404

 Score = 35.0 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 17/106 (16%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87
            L           +C +CD         KG R+   +  D +             ++   
Sbjct: 28  PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPETEYLDALRADLEQALPLVWGRQVHT 84

Query: 88  CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124
             + GG P L     L + L             EI +E N GT E 
Sbjct: 85  VFIGGGTPSLLSAGGLDRLLSDVRALLPLDADAEITLEANPGTFEA 130


>gi|229019959|ref|ZP_04176752.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1273]
 gi|229026193|ref|ZP_04182557.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1272]
 gi|228735121|gb|EEL85752.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1272]
 gi|228741343|gb|EEL91550.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1273]
          Length = 339

 Score = 35.0 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 16/76 (21%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L +     G ++ R   +TG
Sbjct: 24  DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKVFVSIGVRKIR---ITG 76

Query: 93  GEPLLQVDV-PLIQAL 107
           GEPLL+ D+  LI  L
Sbjct: 77  GEPLLRKDLTKLIARL 92


>gi|171315532|ref|ZP_02904768.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
           ambifaria MEX-5]
 gi|171099369|gb|EDT44107.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
           ambifaria MEX-5]
          Length = 404

 Score = 35.0 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 17/106 (16%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87
            L           +C +CD         KG R+   +  D +             ++   
Sbjct: 28  PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPETEYLDALRADLEQALPLVWGRQVHT 84

Query: 88  CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124
             + GG P L     L + L             EI +E N GT E 
Sbjct: 85  VFIGGGTPSLLSAGGLDRLLSDVRALLPLDADAEITLEANPGTFEA 130


>gi|172059922|ref|YP_001807574.1| coproporphyrinogen III oxidase [Burkholderia ambifaria MC40-6]
 gi|171992439|gb|ACB63358.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
           ambifaria MC40-6]
          Length = 404

 Score = 35.0 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 17/106 (16%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87
            L           +C +CD         KG R+   +  D +             ++   
Sbjct: 28  PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPETEYLDALRADLEQALPLVWGRQVHT 84

Query: 88  CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124
             + GG P L     L + L             EI +E N GT E 
Sbjct: 85  VFIGGGTPSLLSAGGLDRLLSDVRALLPLDADAEITLEANPGTFEA 130


>gi|115350909|ref|YP_772748.1| coproporphyrinogen III oxidase [Burkholderia ambifaria AMMD]
 gi|115280897|gb|ABI86414.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Burkholderia ambifaria AMMD]
          Length = 404

 Score = 35.0 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 17/106 (16%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87
            L           +C +CD         KG R+   +  D +             ++   
Sbjct: 28  PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPETEYLDALRADLEQALPLVWGRQVHT 84

Query: 88  CVLTGGEPLLQVDVPLIQAL--------NKRGFEIAVETN-GTIEP 124
             + GG P L     L + L             EI +E N GT E 
Sbjct: 85  VFIGGGTPSLLSAGGLDRLLSDVRALLPLDADAEITLEANPGTFEA 130


>gi|313680864|ref|YP_004058603.1| 23S rRNA m(2)a-2503 methyltransferase [Oceanithermus profundus DSM
           14977]
 gi|313153579|gb|ADR37430.1| 23S rRNA m(2)A-2503 methyltransferase [Oceanithermus profundus DSM
           14977]
          Length = 370

 Score = 35.0 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GE 94
               Q    A C FC T  +G      G   +DQ+   +      G +E R  VL G GE
Sbjct: 131 CISSQVGCPAGCTFCATGKMGFGRNLTGPEILDQILA-VAYHQGLGPREIRNVVLMGMGE 189

Query: 95  PLL 97
           PLL
Sbjct: 190 PLL 192


>gi|253682567|ref|ZP_04863364.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum D str. 1873]
 gi|253562279|gb|EES91731.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum D str. 1873]
          Length = 164

 Score = 35.0 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 20/95 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           R  +F   SGC+             C  C    +      G    ++ +   IE      
Sbjct: 20  RSTLF--LSGCH-----------HNCNECQNKHMQ-DFHYGEDIEINDILSRIESNIPL- 64

Query: 82  EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
               +    +GGEPL Q      L + + ++  +I
Sbjct: 65  ---IKGVTFSGGEPLEQSRPLTFLAKKIKEQNLDI 96


>gi|77920358|ref|YP_358173.1| molybdopterin biosynthesis, protein A [Pelobacter carbinolicus DSM
           2380]
 gi|77546441|gb|ABA90003.1| GTP cyclohydrolase subunit MoaA [Pelobacter carbinolicus DSM 2380]
          Length = 333

 Score = 35.0 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +CR+C     G+        +V    +++    +      +   +TGGEPL++  
Sbjct: 25  DRCNLRCRYC-MPAEGVDTVSHT--DVLSYEEMLRVVAVAVRCGVKKVRITGGEPLVRKG 81

Query: 101 VP-LIQAL--NKRGFEIAVETNGTIEPPQGID 129
           +   IQ +       E+ + TNG +      D
Sbjct: 82  IVGFIQEMTSISESVEVTLTTNGILLADMAAD 113


>gi|45358755|ref|NP_988312.1| radical SAM domain-containing protein [Methanococcus maripaludis
           S2]
 gi|45047621|emb|CAF30748.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 371

 Score = 35.0 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 21/135 (15%)

Query: 47  CRFCD--TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102
           C +C                  ++ + + +EE  + G K      +TGG PLL+++  V 
Sbjct: 36  CYYCPLSEKRKKKDVIFANEKQINSIEEAVEEARLCGSKG---VGITGGNPLLRIERTVE 92

Query: 103 LIQALNKR---GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
            ++AL +     F   +        P+      VS K    LK  G  E++L   ++   
Sbjct: 93  YLKALKEEFGSDFHAHL-----YTTPKF-----VSEKNLKLLKDAGLDEIRLHSSKLFND 142

Query: 160 PENYIGFDF-ERFSL 173
            EN+   DF E+  L
Sbjct: 143 FENFDKLDFLEKLKL 157


>gi|262172962|ref|ZP_06040639.1| GALNS arylsulfatase regulator (Fe-S oxidoreductase) [Vibrio mimicus
           MB-451]
 gi|261890320|gb|EEY36307.1| GALNS arylsulfatase regulator (Fe-S oxidoreductase) [Vibrio mimicus
           MB-451]
          Length = 395

 Score = 35.0 bits (80), Expect = 6.6,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 42  RLSAQCRFCD--TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-- 97
           + +  C +C                   D L  LI+  +I  EK+  Y    GGEP L  
Sbjct: 11  KCNINCEYCYYLEKETFFHHKHKTCITYDTLEQLIKS-YINQEKDDIYFTWQGGEPTLSG 69

Query: 98  ----QVDVPLIQALNKRGFEIA--VETNGTI 122
               +  + L QA   RG  I   ++TNGT+
Sbjct: 70  IEFFEKVIELQQAF-SRGKRIHNAIQTNGTL 99


>gi|237737408|ref|ZP_04567889.1| molybdenum cofactor biosynthesis protein A [Fusobacterium
          mortiferum ATCC 9817]
 gi|229421270|gb|EEO36317.1| molybdenum cofactor biosynthesis protein A [Fusobacterium
          mortiferum ATCC 9817]
          Length = 324

 Score = 35.0 bits (80), Expect = 6.6,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
          DR + +C++C  D D V +   K    +V+++  +I+     G K+ R   +TGGEPL
Sbjct: 18 DRCNLRCKYCMGDKDIVFL--PKDELLSVEEIGRVIKIFSDLGIKKIR---ITGGEPL 70


>gi|317498641|ref|ZP_07956934.1| PTS system protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894128|gb|EFV16317.1| PTS system protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 101

 Score = 35.0 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 13/82 (15%)

Query: 103 LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN 162
           L++A  KRG EI +ET G I     +D     PK           E  +V   V+V+ + 
Sbjct: 23  LMEAAKKRGHEIHMETQGVIGIEDELD-----PKDIV--------EADVVILAVDVNVKG 69

Query: 163 YIGFDFERFSLQPMDGPFLEEN 184
              F  ++    P +   +  N
Sbjct: 70  KERFAGKKMIEVPTETVVMSPN 91


>gi|312136435|ref|YP_004003772.1| radical sam domain protein [Methanothermus fervidus DSM 2088]
 gi|311224154|gb|ADP77010.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088]
          Length = 490

 Score = 35.0 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C  C   F     +      + +++  ++                
Sbjct: 99  CNL-----------RCPTC---FANAATSGYLYEPSYEEIRKMLRLLRNNKPVPTPAIQY 144

Query: 91  TGGEPLLQVD-VPLIQALNKRGF-EIAVETNG 120
            GGEP ++ D + LI+   + GF  + + TNG
Sbjct: 145 AGGEPTVRKDILELIKLAREEGFTHVQIATNG 176


>gi|291280473|ref|YP_003497308.1| pyruvate formate-lyase activating enzyme [Deferribacter
           desulfuricans SSM1]
 gi|290755175|dbj|BAI81552.1| pyruvate formate-lyase activating enzyme [Deferribacter
           desulfuricans SSM1]
          Length = 298

 Score = 35.0 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 40/141 (28%), Gaps = 46/141 (32%)

Query: 24  AVFCRFSGCNLWSGREQDRLS--------------AQCRFC------------DTDFVGI 57
            VF    GC L      +  S               +C  C            DT  V  
Sbjct: 22  TVF--LKGCPLRCMWCHNPESQKMTPQMSFFQSRCIRCVTCETVCPEKAIKIADTLEVHD 79

Query: 58  QGTKGGR----------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-- 99
             T  G                    +++ + + +  +  +        +GGEP  Q   
Sbjct: 80  NCTLCGTCVDECPADALEIIGYYIAAEEVIESVCKDELFFDSSKGGVTFSGGEPFAQPEF 139

Query: 100 DVPLIQALNKRGFEIAVETNG 120
              L++   ++    +V+T+G
Sbjct: 140 LRELLKLSKEKRLNTSVDTSG 160


>gi|316934848|ref|YP_004109830.1| molybdenum cofactor biosynthesis protein A [Rhodopseudomonas
           palustris DX-1]
 gi|315602562|gb|ADU45097.1| molybdenum cofactor biosynthesis protein A [Rhodopseudomonas
           palustris DX-1]
          Length = 344

 Score = 35.0 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 26/152 (17%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+     +     +++L  L       G ++ R   LTGGEPL+
Sbjct: 33  DRCDFRCVYCMAEDMTFL----PRSDLLTLEELDRLCSAFIAKGVRKLR---LTGGEPLV 85

Query: 98  QVD-VPLIQAL---NKRGF--EIAVETNGTI-------EPPQGIDWICVSPKAGCDL--- 141
           + + + L+++L      G   E+ + TNG+            G+  + VS      +   
Sbjct: 86  RRNMMSLVRSLSRHLDSGALDELTLTTNGSQLARFAAELADCGVRRVNVSLDTLDPVEFR 145

Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
           +I    EL  V   ++ +    +        L
Sbjct: 146 RITRWGELDRVLAGIDAARAAGLAVKINTVVL 177


>gi|167824828|ref|ZP_02456299.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 9]
          Length = 366

 Score = 35.0 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 15/104 (14%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
           GR   + R S          DR   +C +C    +        R +V  L  L       
Sbjct: 7   GRAVTYVRLS--------VADRCDFRCVYC----MAQDMRFPPRSDVLTLDALAALARAF 54

Query: 81  GEKEGRYCVLTGGEPLLQV-DVPLIQALNKR-GF-EIAVETNGT 121
                R   LTGGEPL++     L++ + +  G  E+A+ TNG 
Sbjct: 55  VALGVRRIRLTGGEPLVRPGLTTLVERIARLPGLDELALTTNGA 98


>gi|218961796|ref|YP_001741571.1| putative enzyme with radical SAM domain protein (Fe-S protein)
           [Candidatus Cloacamonas acidaminovorans]
 gi|167730453|emb|CAO81365.1| putative enzyme with radical SAM domain protein (Fe-S protein)
           [Candidatus Cloacamonas acidaminovorans]
          Length = 314

 Score = 35.0 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 26/102 (25%)

Query: 19  HAGRV---AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE 75
            +G      +F  F+GCNL           +C +C  ++       G   +V++L  L+ 
Sbjct: 48  FSGTRGSGTIF--FAGCNL-----------RCVYC-QNYEISTLCWGKDISVEELIRLML 93

Query: 76  EQWITGEKEGRYCV---LTGGEPLLQVDVPLIQALNKRGFEI 114
           +    G            T     LQ+   +IQA  ++G  I
Sbjct: 94  KLQEEGAHNINLVTPTHFT-----LQLREAIIQA-KEKGLTI 129


>gi|154174652|ref|YP_001407497.1| molybdenum cofactor biosynthesis protein A [Campylobacter curvus
           525.92]
 gi|166217241|sp|A7GWA5|MOAA_CAMC5 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|112803789|gb|EAU01133.1| molybdenum cofactor biosynthesis protein A [Campylobacter curvus
           525.92]
          Length = 322

 Score = 35.0 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 10/84 (11%)

Query: 42  RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           R + +CR+C   T F           + ++L   ++     G  + R   LTGGEPL++ 
Sbjct: 20  RCNFRCRYCMPTTPFSWTPKEN--LLSFEELFLFVKVAIDEGVTKIR---LTGGEPLVRK 74

Query: 100 DVP-LIQALNK--RGFEIAVETNG 120
           D+   ++ ++      ++A+ TNG
Sbjct: 75  DLDVFVKMISDYKPDIDLALTTNG 98


>gi|327189312|gb|EGE56480.1| molybdenum cofactor biosynthesis protein [Rhizobium etli CNPAF512]
          Length = 561

 Score = 35.0 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          K     +++L  L       G ++ R   LTGGEPL++ +
Sbjct: 251 DRCDFRCTYC-MAENMTFLPKKDLLTLEELDRLCSAFVAKGVRKIR---LTGGEPLVRKN 306

Query: 101 VP-LIQALNKR---GF-EIAVETNGT 121
           +  L++ L ++   G  E+ + TNG+
Sbjct: 307 IMYLVRQLGEKIGSGLDELTLTTNGS 332


>gi|297616999|ref|YP_003702158.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144836|gb|ADI01593.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 163

 Score = 35.0 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 29/94 (30%), Gaps = 20/94 (21%)

Query: 20  AGRV-AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
            G    VF    GC         R    C   D          G   + + LA L+  + 
Sbjct: 16  TGIRITVF--LQGC--------VRGCEGCHNPD----LQPLEGGEVVSEEALAQLVLNKL 61

Query: 79  ITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKR 110
                  R    +GGEPLL  Q    +I  L + 
Sbjct: 62  ---SPLHRGVTFSGGEPLLQAQALEKVISILKRE 92


>gi|271967228|ref|YP_003341424.1| molybdopterin biosynthesis protein A [Streptosporangium roseum DSM
           43021]
 gi|270510403|gb|ACZ88681.1| molybdopterin biosynthesis, protein A [Streptosporangium roseum DSM
           43021]
          Length = 331

 Score = 35.0 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 11/86 (12%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE-EQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C          K      D++  L+       G  E RY   TGGEPLL  
Sbjct: 21  DRCNLRCSYCMPPEGLEWLPKPDLLTADEIVRLVTVGVERLGITEVRY---TGGEPLL-- 75

Query: 100 DVPLIQAL-----NKRGFEIAVETNG 120
              L++ +      + G ++++ TNG
Sbjct: 76  RRELLEIVARTTALRPGPQVSLTTNG 101


>gi|104783026|ref|YP_609524.1| molybdenum cofactor biosynthesis protein A [Pseudomonas entomophila
           L48]
 gi|123255388|sp|Q1I6J5|MOAA_PSEE4 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|95112013|emb|CAK16740.1| putative molybdopterin biosynthesis protein A [Pseudomonas
           entomophila L48]
          Length = 334

 Score = 35.0 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 13/87 (14%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+  Q       ++++L  + E     G ++ R   LTGGEPL+
Sbjct: 25  DRCDFRCVYCMAEDMQFLPRQ----QILSLEELYQVAERFVALGTRKIR---LTGGEPLV 77

Query: 98  -QVDVPLIQALNKR-GF-EIAVETNGT 121
            Q  V L   +    G  E+ + +NG+
Sbjct: 78  RQGIVELCGRIAALPGLRELCLTSNGS 104


>gi|262403967|ref|ZP_06080522.1| coenzyme PQQ synthesis protein E [Vibrio sp. RC586]
 gi|262348999|gb|EEY98137.1| coenzyme PQQ synthesis protein E [Vibrio sp. RC586]
          Length = 375

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 8/89 (8%)

Query: 33  NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
             W   E   +    C +C      ++       + ++  +++ +    G  +     L+
Sbjct: 12  PFWLLLELTYQCPLHCAYCSNP---LELEGEQELSTEEWFEVMTQARQLGAVQLG---LS 65

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETN 119
           GGEPL++ D+  ++   ++ GF   + T+
Sbjct: 66  GGEPLMRKDLEQIVAKAHELGFYTNLITS 94


>gi|254385687|ref|ZP_05001009.1| hypothetical protein SSAG_05195 [Streptomyces sp. Mg1]
 gi|194344554|gb|EDX25520.1| hypothetical protein SSAG_05195 [Streptomyces sp. Mg1]
          Length = 391

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 9/72 (12%)

Query: 33  NLWSGREQDRLSAQCRF----CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            +  G     L+ +C      C T       T  G  + D L   I       E      
Sbjct: 41  PVPCGGLLVALTRRCPLSCAHCST---SSSMTVSGEPDPDHLLRFIGSFG--AEDRPEVV 95

Query: 89  VLTGGEPLLQVD 100
           +LTGGEPLL  +
Sbjct: 96  MLTGGEPLLLPE 107


>gi|300728085|ref|ZP_07061458.1| putative arylsulfatase regulator [Prevotella bryantii B14]
 gi|299774687|gb|EFI71306.1| putative arylsulfatase regulator [Prevotella bryantii B14]
          Length = 423

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 26/97 (26%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C       +      +  D + + I    I G    +Y  +T
Sbjct: 88  CNL-----------HCAYC------FEQQHPSVFMNDDVENDIISF-IKGHVNAKYVHIT 129

Query: 92  --GGEPLLQ--VDVPLIQALNK----RGFEIAVETNG 120
             GGEPLL     V L + +        +E  + TNG
Sbjct: 130 WFGGEPLLYFKRIVSLTKKIKSIQGIEKYEAEIITNG 166


>gi|254736837|ref|ZP_05194543.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           Western North America USA6153]
          Length = 247

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  + +     G ++ R   LTG
Sbjct: 30  DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 82

Query: 93  GEPLLQVDVP-LIQALNKRG--FEIAVETN 119
           GEPLL+ D+  LI  L K     +I + TN
Sbjct: 83  GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 112


>gi|228917377|ref|ZP_04080930.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228842304|gb|EEM87399.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 339

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  + +     G ++ R   LTG
Sbjct: 24  DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 76

Query: 93  GEPLLQVDVP-LIQALNKRG--FEIAVETN 119
           GEPLL+ D+  LI  L K     +I + TN
Sbjct: 77  GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 106


>gi|228948475|ref|ZP_04110757.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228811234|gb|EEM57573.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 339

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  + +     G ++ R   LTG
Sbjct: 24  DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 76

Query: 93  GEPLLQVDVP-LIQALNKRG--FEIAVETN 119
           GEPLL+ D+  LI  L K     +I + TN
Sbjct: 77  GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 106


>gi|229124294|ref|ZP_04253485.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           95/8201]
 gi|228659195|gb|EEL14844.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           95/8201]
          Length = 339

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  + +     G ++ R   LTG
Sbjct: 24  DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 76

Query: 93  GEPLLQVDVP-LIQALNKRG--FEIAVETN 119
           GEPLL+ D+  LI  L K     +I + TN
Sbjct: 77  GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 106


>gi|226323350|ref|ZP_03798868.1| hypothetical protein COPCOM_01124 [Coprococcus comes ATCC 27758]
 gi|225208034|gb|EEG90388.1| hypothetical protein COPCOM_01124 [Coprococcus comes ATCC 27758]
          Length = 469

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 18/98 (18%)

Query: 32  CN---LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGR 86
           CN   L         +  C  C           G + N+  +++  +I +    G     
Sbjct: 110 CNIPWLILMDPTSACNLHCTGC------WAAEYGHKLNLTYEEMDSIITQGKELGIYFYM 163

Query: 87  YCVLTGGEPLLQVDVPLIQALNKRGFEIAVE--TNGTI 122
           Y   TGGEPL++     I  L ++ ++      TNGT+
Sbjct: 164 Y---TGGEPLVRKKD--IIRLCEKHYDCEFHAFTNGTL 196


>gi|224047046|ref|XP_002186662.1| PREDICTED: molybdenum cofactor synthesis 1 [Taeniopygia guttata]
          Length = 755

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       ++ + +C++C     G+Q T        Q  ++I    +  ++      LTG
Sbjct: 128 NYLRISLTEKCNLRCQYC-MPEEGVQLTPKSELLTTQ--EIITLARLFVKEGVDKIRLTG 184

Query: 93  GEPLLQVD-VPLIQAL-NKRGFE-IAVETNG 120
           GEPL++ D V ++  L    G + IAV TNG
Sbjct: 185 GEPLIRPDVVDIVGELYKLEGLKTIAVTTNG 215


>gi|196043992|ref|ZP_03111229.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           03BB108]
 gi|225866714|ref|YP_002752092.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           03BB102]
 gi|196025328|gb|EDX63998.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           03BB108]
 gi|225787425|gb|ACO27642.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           03BB102]
          Length = 337

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  + +     G ++ R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQALNKRG--FEIAVETN 119
           GEPLL+ D+  LI  L K     +I + TN
Sbjct: 75  GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 104


>gi|196040891|ref|ZP_03108189.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           NVH0597-99]
 gi|301056234|ref|YP_003794445.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis CI]
 gi|196028345|gb|EDX66954.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           NVH0597-99]
 gi|300378403|gb|ADK07307.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus biovar
           anthracis str. CI]
          Length = 337

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  + +     G ++ R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQALNKRG--FEIAVETN 119
           GEPLL+ D+  LI  L K     +I + TN
Sbjct: 75  GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 104


>gi|167633892|ref|ZP_02392215.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0442]
 gi|170685934|ref|ZP_02877157.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0465]
 gi|254687534|ref|ZP_05151390.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           CNEVA-9066]
 gi|254725099|ref|ZP_05186882.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A1055]
 gi|254741872|ref|ZP_05199559.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           Kruger B]
 gi|167530693|gb|EDR93395.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0442]
 gi|170670398|gb|EDT21138.1| molybdenum cofactor biosynthesis protein A [Bacillus anthracis str.
           A0465]
          Length = 337

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  + +     G ++ R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQALNKRG--FEIAVETN 119
           GEPLL+ D+  LI  L K     +I + TN
Sbjct: 75  GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 104


>gi|196032982|ref|ZP_03100395.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus W]
 gi|218905955|ref|YP_002453789.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH820]
 gi|195994411|gb|EDX58366.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus W]
 gi|218538708|gb|ACK91106.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH820]
          Length = 337

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  + +     G ++ R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQALNKRG--FEIAVETN 119
           GEPLL+ D+  LI  L K     +I + TN
Sbjct: 75  GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 104


>gi|118479860|ref|YP_897011.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           str. Al Hakam]
 gi|118419085|gb|ABK87504.1| GTP cyclohydrolase subunit MoaA [Bacillus thuringiensis str. Al
           Hakam]
          Length = 339

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  + +     G ++ R   LTG
Sbjct: 24  DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 76

Query: 93  GEPLLQVDVP-LIQALNKRG--FEIAVETN 119
           GEPLL+ D+  LI  L K     +I + TN
Sbjct: 77  GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 106


>gi|49478739|ref|YP_038771.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|228936036|ref|ZP_04098846.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|49330295|gb|AAT60941.1| molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|228823804|gb|EEM69626.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 339

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  + +     G ++ R   LTG
Sbjct: 24  DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 76

Query: 93  GEPLLQVDVP-LIQALNKRG--FEIAVETN 119
           GEPLL+ D+  LI  L K     +I + TN
Sbjct: 77  GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 106


>gi|52140778|ref|YP_086052.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus E33L]
 gi|51974247|gb|AAU15797.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus E33L]
          Length = 337

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  + +     G ++ R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 74

Query: 93  GEPLLQVDVP-LIQALNKRG--FEIAVETN 119
           GEPLL+ D+  LI  L K     +I + TN
Sbjct: 75  GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 104


>gi|159904144|ref|YP_001551488.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str.
           MIT 9211]
 gi|205829806|sp|A9BCH2|RLMN_PROM4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|159889320|gb|ABX09534.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
           MIT 9211]
          Length = 356

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 9/71 (12%)

Query: 28  RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
           R + C       Q   S  CRFC       +G       V ++ D +       ++   +
Sbjct: 109 RLTTC----VSSQVGCSMGCRFC----ATGKGGFQRSLEVHEIVDQVLSIREAFDRRPSH 160

Query: 88  CVLTG-GEPLL 97
            V  G GEPLL
Sbjct: 161 IVFMGMGEPLL 171


>gi|241204967|ref|YP_002976063.1| molybdenum cofactor biosynthesis protein A [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240858857|gb|ACS56524.1| molybdenum cofactor biosynthesis protein A [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 348

 Score = 35.0 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C          K     +++L  L       G  + R   LTGGEPL++ +
Sbjct: 38  DRCDFRCTYC-MAENMTFLPKKDLLTLEELDRLCSAFIARGVSKIR---LTGGEPLVRKN 93

Query: 101 VP-LIQALNK---RGF-EIAVETNGT 121
           +  L++ L +    G  E+ + TNG+
Sbjct: 94  IMYLVRQLGQKIGAGLDELTLTTNGS 119


>gi|126178843|ref|YP_001046808.1| radical SAM domain-containing protein [Methanoculleus marisnigri
          JR1]
 gi|125861637|gb|ABN56826.1| Radical SAM domain protein [Methanoculleus marisnigri JR1]
          Length = 385

 Score = 35.0 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 21/69 (30%)

Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
          GC            ++C +C          +    ++  + ++ E      + +     +
Sbjct: 14 GCP-----------SKCHYC-----WSSDERSPVMSIKTVREIAE---WLKDYQSNQVTI 54

Query: 91 T--GGEPLL 97
          T  GGEPLL
Sbjct: 55 TFHGGEPLL 63


>gi|330828904|ref|YP_004391856.1| GTP cyclohydrolase subunit MoaA [Aeromonas veronii B565]
 gi|328804040|gb|AEB49239.1| GTP cyclohydrolase subunit MoaA [Aeromonas veronii B565]
          Length = 331

 Score = 35.0 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           D  + +C +C  D  +   +G K GR     + ++            R   +TGGEP L+
Sbjct: 21  DVCNFRCTYCLPD-GYRPPEGHKTGRQPFLSIDEIRRVVSGFAAMGTRKVRITGGEPSLR 79

Query: 99  VDVPLIQALNK--RGFE-IAVETNG 120
            D   I  +     G E +A+ TNG
Sbjct: 80  RDFTEIVKVIATTPGIEKVAMTTNG 104


>gi|319948393|ref|ZP_08022534.1| molybdenum cofactor biosynthesis protein A [Dietzia cinnamea P4]
 gi|319437947|gb|EFV92926.1| molybdenum cofactor biosynthesis protein A [Dietzia cinnamea P4]
          Length = 356

 Score = 35.0 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           ++ S +C +C  +          R   D++  L+       E        TGGEPL++ D
Sbjct: 43  EKCSLRCTYCMPEEGLPPIPDAARMTADEVIRLV--TLAHRELGVHEVRFTGGEPLMRSD 100

Query: 101 VP 102
           + 
Sbjct: 101 LE 102


>gi|313204086|ref|YP_004042743.1| transcriptional regulator [Paludibacter propionicigenes WB4]
 gi|312443402|gb|ADQ79758.1| transcriptional regulator [Paludibacter propionicigenes WB4]
          Length = 407

 Score = 35.0 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 24/102 (23%)

Query: 32  CNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
           CNL           +C +C   D            R + + L   IE+       E    
Sbjct: 25  CNL-----------RCSYCYYLD-KKSLSPNNSSNRMSEETLELFIEQYINAQPGEEVLF 72

Query: 89  VLTGGEPLL------QVDVPLIQALNKRGFEIA--VETNGTI 122
              GGEPLL      Q  + L Q +  R   I   ++TNGT+
Sbjct: 73  TWHGGEPLLMGIEYYQRAIRL-QKVYGRNRRIENVLQTNGTL 113


>gi|253579936|ref|ZP_04857204.1| molybdenum cofactor biosynthesis protein A [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848935|gb|EES76897.1| molybdenum cofactor biosynthesis protein A [Ruminococcus sp.
           5_1_39BFAA]
          Length = 324

 Score = 35.0 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 15/105 (14%)

Query: 41  DRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C     G++  +       D++  +        +   R   LTGGEPL++ 
Sbjct: 18  DRCNLRCIYC-MPEEGVKSLSHAEILTYDEILRI---CRCAADLGIRKIKLTGGEPLVRK 73

Query: 100 DVP-LIQALNK-RGFE-IAVETNGTIEPPQ-------GIDWICVS 134
               L + +    G E + + TNG +   Q       GID I +S
Sbjct: 74  GCASLAKQIKAIPGIEKVTLTTNGILLAEQLDALLDAGIDAINIS 118


>gi|170289997|ref|YP_001736813.1| radical SAM domain-containing protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174077|gb|ACB07130.1| Radical SAM domain protein [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 329

 Score = 35.0 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 19/89 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C +     +   G     +++  L+ E   +G    ++   T
Sbjct: 18  CNL-----------NCPYCYSTHYLRERPLGR----EEVMRLLREAASSG---IKHIDYT 59

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETN 119
           GGEPL + D+  +++     G   ++ TN
Sbjct: 60  GGEPLTRRDISEILEETADLGISASIFTN 88


>gi|167767569|ref|ZP_02439622.1| hypothetical protein CLOSS21_02088 [Clostridium sp. SS2/1]
 gi|167710861|gb|EDS21440.1| hypothetical protein CLOSS21_02088 [Clostridium sp. SS2/1]
 gi|291558476|emb|CBL37276.1| PTS system, fructose-specific, IIB component [butyrate-producing
           bacterium SSC/2]
          Length = 101

 Score = 35.0 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 13/82 (15%)

Query: 103 LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN 162
           L++A  KRG EI +ET G I     +D     PK           E  +V   V+V+ + 
Sbjct: 23  LMEAAKKRGHEIHMETQGVIGIEDELD-----PKDIA--------EADVVILAVDVNVKG 69

Query: 163 YIGFDFERFSLQPMDGPFLEEN 184
              F  ++    P +   +  N
Sbjct: 70  KERFAGKKMIEVPTETVVMSPN 91


>gi|119776656|ref|YP_929396.1| molybdenum cofactor biosynthesis protein A [Shewanella amazonensis
           SB2B]
 gi|119769156|gb|ABM01727.1| GTP cyclohydrolase subunit MoaA [Shewanella amazonensis SB2B]
          Length = 340

 Score = 35.0 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D  + +C +C    +       GR +   L+++        +   R   +TGGEP L+ D
Sbjct: 35  DVCNFKCSYC----LPDGYHPDGRPSFLTLSEIENLIAAFAKAGTRKVRITGGEPTLRKD 90

Query: 101 V 101
            
Sbjct: 91  F 91


>gi|219667457|ref|YP_002457892.1| molybdenum cofactor biosynthesis protein A [Desulfitobacterium
           hafniense DCB-2]
 gi|219537717|gb|ACL19456.1| molybdenum cofactor biosynthesis protein A [Desulfitobacterium
           hafniense DCB-2]
          Length = 323

 Score = 35.0 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 12/95 (12%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C++C     G+Q     R    +++  ++      G +  R   +TGGEPL++ 
Sbjct: 18  DRCNLRCKYC-MPAEGVQWIPHERILTYEEILRVMRISTTLGFRRFR---ITGGEPLIRS 73

Query: 100 DVPLIQALNKRGFEIAVE-----TNGTIEPPQGID 129
            V  ++ L        VE     TNG +      D
Sbjct: 74  GV--LEFLQNASQIPGVEDLMLTTNGILLADMAED 106


>gi|289192830|ref|YP_003458771.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
 gi|288939280|gb|ADC70035.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
          Length = 301

 Score = 35.0 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 29/96 (30%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              CNL            C +C   +  ++  + G Y   + A+ +              
Sbjct: 62  TQKCNL-----------NCIYC---YSRLKTVERGIYGNLEEAEAVTISQY--------- 98

Query: 89  VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
               GEPLL ++     I+     G  + ++TNGT+
Sbjct: 99  ----GEPLLDLEGVKKAIEFCKDLGLRVDLQTNGTL 130


>gi|168182297|ref|ZP_02616961.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum Bf]
 gi|237793412|ref|YP_002860964.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum Ba4 str. 657]
 gi|182674593|gb|EDT86554.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum Bf]
 gi|229261656|gb|ACQ52689.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium botulinum Ba4 str. 657]
          Length = 171

 Score = 35.0 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 29/95 (30%), Gaps = 20/95 (21%)

Query: 22  RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           R  VF   SGC       Q++      FC           G + ++  +   IE      
Sbjct: 23  RSVVFV--SGCKHNCKECQNKEMQ--SFC----------YGDKISLKDILKRIESNVPLI 68

Query: 82  EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
                    +GGEPL        L + +   G  I
Sbjct: 69  SG----VTFSGGEPLEHIKELSSLAEEIKSLGLNI 99


>gi|150009791|ref|YP_001304534.1| putative Fe-S oxidoreductase [Parabacteroides distasonis ATCC 8503]
 gi|149938215|gb|ABR44912.1| putative Fe-S oxidoreductase [Parabacteroides distasonis ATCC 8503]
          Length = 403

 Score = 35.0 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 11/93 (11%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R +A+C  C   +      K      D++  + E              ++GGEP L+ D+
Sbjct: 29  RCNAKCAMC--FYAQEMDKKQPDLTFDEIKKISETAGQFNRLW-----ISGGEPTLREDL 81

Query: 102 PLIQALNKRG---FEIAVETNGTIEPPQGIDWI 131
           P I  L  +     ++ + TNG ++P + ++W+
Sbjct: 82  PEILELFYKNNHIKDVNIPTNG-LKPDRIVEWV 113


>gi|317497887|ref|ZP_07956197.1| glycosyl transferase group 1 [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894868|gb|EFV17040.1| glycosyl transferase group 1 [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 585

 Score = 35.0 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R +A+C  C  +      T     +++ +  L             +  +TGGEP ++ D+
Sbjct: 209 RCNARCNMC--NRYKKPSTPDEEISLETIKKL---------PPMYFTNITGGEPFIRTDL 257

Query: 102 -PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
             +++ L K+   I + TNG     + +D     P  G  + I+G +E
Sbjct: 258 KDIVRELQKKSDRIVISTNG-FFTDRIVDLCKEFPNVGIRISIEGLEE 304


>gi|197336065|ref|YP_002155383.1| radical SAM enzyme, Cfr family [Vibrio fischeri MJ11]
 gi|254807222|sp|B5FAW9|RLMN_VIBFM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|197317555|gb|ACH67002.1| radical SAM enzyme, Cfr family [Vibrio fischeri MJ11]
          Length = 372

 Score = 35.0 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 17/110 (15%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI---TGEKEGRYCVLTG 92
               Q   + +C+FC T   G          V Q+     E  +   TG +     V+ G
Sbjct: 107 CVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIGLEKETGRRPITNVVMMG 166

Query: 93  -GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIEPPQGIDWIC 132
            GEPLL     LI AL       GF      + V T+G      G+D + 
Sbjct: 167 MGEPLL-NMKNLIPALEIMLDDLGFALSKRRVTVSTSG---VVSGLDQMT 212


>gi|59711233|ref|YP_204009.1| hypothetical protein VF_0626 [Vibrio fischeri ES114]
 gi|75354452|sp|Q5E775|RLMN_VIBF1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|59479334|gb|AAW85121.1| predicted enzyme [Vibrio fischeri ES114]
          Length = 372

 Score = 35.0 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 17/110 (15%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI---TGEKEGRYCVLTG 92
               Q   + +C+FC T   G          V Q+     E  +   TG +     V+ G
Sbjct: 107 CVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIGLEKETGRRPITNVVMMG 166

Query: 93  -GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIEPPQGIDWIC 132
            GEPLL     LI AL       GF      + V T+G      G+D + 
Sbjct: 167 MGEPLL-NMKNLIPALEIMLDDLGFALSKRRVTVSTSG---VVSGLDQMT 212


>gi|54026287|ref|YP_120529.1| molybdenum cofactor biosynthesis protein A [Nocardia farcinica IFM
           10152]
 gi|54017795|dbj|BAD59165.1| putative molybdopterin biosynthesis protein [Nocardia farcinica IFM
           10152]
          Length = 347

 Score = 35.0 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           ++ S +C +C     G+          VD++  L+       E   R    TGGEPLL+ 
Sbjct: 39  EKCSLRCTYC-MPEEGLPPIPAEELLTVDEIVRLVA--LAVEELGVREVRFTGGEPLLRR 95

Query: 100 DVP-LIQALNKR 110
           D+  +I   + R
Sbjct: 96  DLERIIAGCHAR 107


>gi|260888086|ref|ZP_05899349.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Selenomonas sputigena ATCC 35185]
 gi|330839965|ref|YP_004414545.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Selenomonas sputigena ATCC 35185]
 gi|260862115|gb|EEX76615.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Selenomonas sputigena ATCC 35185]
 gi|329747729|gb|AEC01086.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Selenomonas sputigena ATCC 35185]
          Length = 167

 Score = 35.0 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 21/93 (22%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F    GC              C  C  +        G   +   +   +      G  
Sbjct: 23  TIF--TQGCP-----------HHCPGC-QNPKTHDFAGGLEMDTKTILKDV-----LGNP 63

Query: 84  EGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
                 L+GGEP  Q      L   ++  G ++
Sbjct: 64  LLTGVTLSGGEPFCQAAPLASLAHEVHAHGMDV 96


>gi|188585752|ref|YP_001917297.1| Radical SAM domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350439|gb|ACB84709.1| Radical SAM domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 393

 Score = 35.0 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 17/92 (18%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C  C         +  G  +  +    I++            + +
Sbjct: 48  CNL-----------NCIHC--YSDSDSNSYSGELSTKEAKTFIDDLQA---FNVPVLLFS 91

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GGEPLL+ D   L +   ++G    + TNGT+
Sbjct: 92  GGEPLLRNDFFELAEYAAQKGIRSTISTNGTL 123


>gi|126460321|ref|YP_001056599.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126250042|gb|ABO09133.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548]
          Length = 378

 Score = 35.0 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 28  RFSGCNLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           RF    L    E  +     C+ C      I     G  + ++   LIE+    G+    
Sbjct: 10  RFHEAPLLVFWESTKACPLACKHC--RADAILKPLPGELSTEEGKRLIEQVAEFGD-PKP 66

Query: 87  YCVLTGGEPLLQVDV-PLIQALNKRGFEIAV 116
             ++TGG+PL++ D+  L+   N  G  +++
Sbjct: 67  LLIITGGDPLMRADLFELVDYANSLGVPVSL 97


>gi|2253437|gb|AAC38153.1| ORF2 [Rahnella aquatilis]
          Length = 396

 Score = 35.0 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 17/99 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           C +      + L         DF   +          Q   + EE    G  +      +
Sbjct: 41  CPVQCPYWSNPL---------DFAKQEKE----LTTAQWIKVFEEAREMGAVQ---IGFS 84

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGID 129
           GGEPL++ D+P LI+     GF   + T+G     + ID
Sbjct: 85  GGEPLVRKDLPELIRGARDLGFYTNLITSGIGLTEKKID 123


>gi|329927267|ref|ZP_08281548.1| radical SAM domain protein [Paenibacillus sp. HGF5]
 gi|328938570|gb|EGG34954.1| radical SAM domain protein [Paenibacillus sp. HGF5]
          Length = 471

 Score = 35.0 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 15/107 (14%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIE 75
            R  GC    G   D     C             C   F      +    ++ Q+ + + 
Sbjct: 78  IR-YGCPYDCGLCPDHEQHSCLTLLEITDHCNLQCPICFAESSPHRTSYRSLAQI-EFML 135

Query: 76  EQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETNG 120
           ++ +  E E     ++GGEP    D   ++     R    I V TNG
Sbjct: 136 DRIVENEGEPDIVQISGGEPTTHPDFFDILDMCKSRPIKHIMVNTNG 182


>gi|291534716|emb|CBL07828.1| Predicted Fe-S oxidoreductases [Roseburia intestinalis M50/1]
          Length = 465

 Score = 35.0 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 18/98 (18%)

Query: 32  CN---LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGR 86
           CN   L         +  C  C           G + N+  D+L  ++ +    G     
Sbjct: 110 CNIPWLILMDPTSACNLHCTGC------WAAEYGNKLNLSFDELDSIVTQGKELGIYFYM 163

Query: 87  YCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122
               TGGEPL+     + L +  N   F     TNGT+
Sbjct: 164 M---TGGEPLVRKADIIKLCEKHNDCAFHCY--TNGTL 196


>gi|229152925|ref|ZP_04281107.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1550]
 gi|228630538|gb|EEK87185.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1550]
          Length = 339

 Score = 35.0 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L +     G ++ R   +TG
Sbjct: 24  DRCNFRCTYCMPAEIFGPD--YAFLKDEF--LLTFDEIERLAKLFVNIGVRKIR---ITG 76

Query: 93  GEPLLQVDV-PLIQALNKRG--FEIAVETN 119
           GEPLL+ D+  LI  L K     +I + TN
Sbjct: 77  GEPLLRKDLTKLIARLVKIDGLIDIGLTTN 106


>gi|261404972|ref|YP_003241213.1| Radical SAM domain-containing protein [Paenibacillus sp. Y412MC10]
 gi|261281435|gb|ACX63406.1| Radical SAM domain protein [Paenibacillus sp. Y412MC10]
          Length = 471

 Score = 35.0 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 31/107 (28%), Gaps = 15/107 (14%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIE 75
            R  GC    G   D     C             C   F          Y      + + 
Sbjct: 78  IR-YGCPYDCGLCPDHEQHSCLTLLEITDHCNLQCPICFA-ESSPHRTSYRSLTQIEFML 135

Query: 76  EQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETNG 120
           ++ +  E E     ++GGEP    D   ++     R    I V TNG
Sbjct: 136 DRIVENEGEPDIVQISGGEPTTHPDFFDILDMCKSRPIKHIMVNTNG 182


>gi|171686210|ref|XP_001908046.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943066|emb|CAP68719.1| unnamed protein product [Podospora anserina S mat+]
          Length = 709

 Score = 35.0 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 19/94 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C  +       +       ++  L       G  + R   LT
Sbjct: 130 CNL-----------RCLYCMPEEGVPLSPQKELLTTPEIVMLSSLFVSQGVTKIR---LT 175

Query: 92  GGEPLLQVDV-PLIQ---ALNKRGF-EIAVETNG 120
           GGEP ++ D+ PL+Q   AL   G  E+ + TNG
Sbjct: 176 GGEPTVRRDIVPLMQQIGALRAHGLRELCLTTNG 209


>gi|315127649|ref|YP_004069652.1| oxygen-independent coproporphyrinogen III oxidase
           [Pseudoalteromonas sp. SM9913]
 gi|315016163|gb|ADT69501.1| oxygen-independent coproporphyrinogen III oxidase
           [Pseudoalteromonas sp. SM9913]
          Length = 378

 Score = 35.0 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 10/109 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91
            L           +C +CD +  G +G       V  L D ++      +    + + + 
Sbjct: 5   PLSLYVHVPWCVQKCPYCDFNSHGQKGDIPEAEYVQHLIDDLKADLHLVQGRKIHSIFIG 64

Query: 92  GGEPLLQVDVPLIQALNK--------RGFEIAVETN-GTIEPPQGIDWI 131
           GG P L       + L +           EI +E N GT+E  +  D++
Sbjct: 65  GGTPSLLTGAAYTRLLKEVDSLIGLSDNCEITLEANPGTVETGRFKDYV 113


>gi|313905905|ref|ZP_07839261.1| Radical SAM domain protein [Eubacterium cellulosolvens 6]
 gi|313469246|gb|EFR64592.1| Radical SAM domain protein [Eubacterium cellulosolvens 6]
          Length = 111

 Score = 35.0 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 26/95 (27%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGRYCV 89
           CNL            C+ C           G + N+  +++ ++IE+    G     + +
Sbjct: 15  CNL-----------HCQGC------WAAEYGNKLNLSFEEIDNIIEQGKDLGVY---FYI 54

Query: 90  LTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122
            TGGEPL+  +  + L +  +     ++  TNGT+
Sbjct: 55  YTGGEPLIRKKDIIALCEK-HSDCVFLSF-TNGTL 87


>gi|289422611|ref|ZP_06424453.1| radical SAM domain protein [Peptostreptococcus anaerobius 653-L]
 gi|289156962|gb|EFD05585.1| radical SAM domain protein [Peptostreptococcus anaerobius 653-L]
          Length = 410

 Score = 35.0 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 17/70 (24%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C T+       + G Y++    D ++E  +         ++T
Sbjct: 97  CNL-----------RCSHCITNSGEKVKEELGLYSILDFIDKLKEIKVNK------LIIT 139

Query: 92  GGEPLLQVDV 101
           GGEPL++ D 
Sbjct: 140 GGEPLMKKDF 149


>gi|256838458|ref|ZP_05543968.1| radical SAM domain-containing protein [Parabacteroides sp. D13]
 gi|256739377|gb|EEU52701.1| radical SAM domain-containing protein [Parabacteroides sp. D13]
          Length = 403

 Score = 35.0 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 11/93 (11%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R +A+C  C   +      K      D++  + E              ++GGEP L+ D+
Sbjct: 29  RCNAKCAMC--FYAQEMDKKQPDLTFDEIKKISETAGQFNRLW-----ISGGEPTLREDL 81

Query: 102 PLIQALNKRG---FEIAVETNGTIEPPQGIDWI 131
           P I  L  +     ++ + TNG ++P + ++W+
Sbjct: 82  PEILELFYKNNHIKDVNIPTNG-LKPDRIVEWV 113


>gi|255994384|ref|ZP_05427519.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Eubacterium saphenum ATCC 49989]
 gi|255993097|gb|EEU03186.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Eubacterium saphenum ATCC 49989]
          Length = 177

 Score = 35.0 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 27/97 (27%)

Query: 25  VFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           +FC   GC              C+ C   DT        +     VD+L   I +  +  
Sbjct: 33  IFC--QGCP-----------HGCKACHNPDT----HAFEENKLIGVDELFKSIMKPRLGK 75

Query: 82  EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAV 116
                    +GGEP  Q      L + L   G +I +
Sbjct: 76  G-----VTFSGGEPFCQAVPFAKLGEKLKAAGIDILI 107


>gi|323706427|ref|ZP_08117989.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534212|gb|EGB24001.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 459

 Score = 35.0 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 29/113 (25%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVL 90
           CNL           +C +C   F      KGGR     ++     +  I      +   +
Sbjct: 104 CNL-----------RCSYC---FASTGDFKGGRKLMPYEVGKKAIDFLIKNSGNRKIVEV 149

Query: 91  T--GGEPLLQVDVPLIQALNKRG----------FEIAVETNGTIEPPQGIDWI 131
              GGEPLL  +  +++ L   G           +  + TNG +   +   +I
Sbjct: 150 DFFGGEPLL--NFDVVKKLVDYGREEAKKYGKTIKYTITTNGVLLDEEKATYI 200


>gi|313900899|ref|ZP_07834389.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium sp. HGF2]
 gi|312954319|gb|EFR35997.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Clostridium sp. HGF2]
          Length = 182

 Score = 35.0 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 18/77 (23%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
             GC              C  C           G  Y+V+QL   I +  +         
Sbjct: 29  TQGC-----------RHHCPNCHNPQTW-DTEGGTLYSVEQLQQQIRDAQLQSG-----L 71

Query: 89  VLTGGEPLLQVDVPLIQ 105
            L+GGEP LQV+ PL++
Sbjct: 72  TLSGGEPFLQVE-PLLE 87


>gi|291458711|ref|ZP_06598101.1| molybdenum cofactor biosynthesis protein A [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291418628|gb|EFE92347.1| molybdenum cofactor biosynthesis protein A [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 305

 Score = 35.0 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 56/144 (38%), Gaps = 20/144 (13%)

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK-RGFE-IAVETNGT- 121
           + ++L D+       G    +   +TGGEPL++ D P  I  L +  G E + + +NG  
Sbjct: 16  SYEELLDVARAAAALGITRFK---VTGGEPLVRRDCPEFIGELKRIPGVEQVTMTSNGVL 72

Query: 122 ------IEPPQGIDWICVS---PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
                      G+D + VS    K     +I G  EL  V   ++ +    +        
Sbjct: 73  LTRLLPRLLENGLDAVNVSLDTLKRERFSEITGMDELPAVLSGIDEALRAGLKLKLNAV- 131

Query: 173 LQPMDGPFLEENTNLAISYCFQNP 196
           LQP  G   EE   L +S     P
Sbjct: 132 LQP--GVNEEERWEL-LSLAKDRP 152


>gi|262381373|ref|ZP_06074511.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296550|gb|EEY84480.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 368

 Score = 35.0 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 36  SGREQDRLSAQCRFCD-TDFVGIQGTKGG-RYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
                   + +C +C  T            +Y+ +Q+   +  + + G      C   GG
Sbjct: 10  CYVPVTTCTLRCHYCYITQHRLFDNKLPTFKYSSEQVRKSLSRERLGGVCLINLCG--GG 67

Query: 94  EPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           E LL  ++   ++AL + G  + + TN T+
Sbjct: 68  ETLLPPEMTEYVRALLEEGHYVMIVTNATV 97


>gi|257413119|ref|ZP_04742069.2| radical SAM domain protein [Roseburia intestinalis L1-82]
 gi|257204501|gb|EEV02786.1| radical SAM domain protein [Roseburia intestinalis L1-82]
          Length = 474

 Score = 35.0 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 18/98 (18%)

Query: 32  CN---LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGR 86
           CN   L         +  C  C           G + N+  D+L  ++ +    G     
Sbjct: 119 CNIPWLILMDPTSACNLHCTGC------WAAEYGNKLNLSFDELDSIVTQGKELGIYFYM 172

Query: 87  YCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTI 122
               TGGEPL+     + L +  N   F     TNGT+
Sbjct: 173 M---TGGEPLVRKADIIKLCEKHNDCAFHCY--TNGTL 205


>gi|194443015|ref|YP_002042363.1| coproporphyrinogen III oxidase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194401678|gb|ACF61900.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 378

 Score = 35.0 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L           +C +CD +            Y    L DL  +      +E +   + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLRDLDADVAWAQGREVKTIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEPPQGIDW 130
           GG P L +  P +Q L              EI +E N GT+E  + ID+
Sbjct: 66  GGTPSL-LSGPAMQTLLDGVRARLNLAADAEITMEANPGTVETDRFIDY 113


>gi|61229947|sp|O33506|PQQE_RAHAQ RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
          Length = 377

 Score = 35.0 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 17/99 (17%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           C +      + L         DF   +          Q   + EE    G  +      +
Sbjct: 22  CPVQCPYWSNPL---------DFAKQEKE----LTTAQWIKVFEEAREMGAVQ---IGFS 65

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGID 129
           GGEPL++ D+P LI+     GF   + T+G     + ID
Sbjct: 66  GGEPLVRKDLPELIRGARDLGFYTNLITSGIGLTEKKID 104


>gi|323141977|ref|ZP_08076829.1| radical SAM domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322413546|gb|EFY04413.1| radical SAM domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 339

 Score = 35.0 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 39/100 (39%), Gaps = 25/100 (25%)

Query: 29  FSG-CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
            +G CN             CR+C   +      +    + +     ++   +  +   R+
Sbjct: 8   LTGQCNF-----------ACRYC---YAAEH--ERSMMSPETALAAVK---LAADGGERF 48

Query: 88  CV-LTGGEPLL--QVDVPLIQALNKRGFE--IAVETNGTI 122
            +  +GGEPLL       ++  +++      + ++TNG++
Sbjct: 49  VIQFSGGEPLLNFDCLKAVVDYVHQEKPPAVLQLQTNGSL 88


>gi|312136266|ref|YP_004003603.1| wyosine base formation domain protein [Methanothermus fervidus DSM
           2088]
 gi|311223985|gb|ADP76841.1| Wyosine base formation domain protein [Methanothermus fervidus DSM
           2088]
          Length = 305

 Score = 35.0 bits (80), Expect = 7.5,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 93  GEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
           GEP L   +  LI+  +++ F   + TNG + 
Sbjct: 136 GEPTLYPLIDELIEEFHRKNFTTFLVTNGLLP 167


>gi|119470551|ref|ZP_01613254.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Alteromonadales bacterium TW-7]
 gi|119446252|gb|EAW27529.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Alteromonadales bacterium TW-7]
          Length = 369

 Score = 35.0 bits (80), Expect = 7.5,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 50/152 (32%), Gaps = 23/152 (15%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LTGGEPLLQVD 100
               +C +CD +  G +G       V  L D ++      +    + + + GG P L   
Sbjct: 5   WCVQKCPYCDFNSHGQKGDIPEAEYVQHLIDDLKADLHLVQGRKIHSIFIGGGTPSLLTG 64

Query: 101 VPLIQALNK--------RGFEIAVETN-GTIE-------PPQGIDWICV------SPKAG 138
               + L++           EI +E N GT+E          GI+ I +      S K  
Sbjct: 65  DAYTRLLSEVDSLIGLTDNCEITLEANPGTVETGRFKEYVKAGINRISIGIQSLQSDKLK 124

Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
              +I G  E      Q   +  N    D   
Sbjct: 125 ALGRIHGANEATYAAEQAKEAGLNSFNLDLMH 156


>gi|260893119|ref|YP_003239216.1| Radical SAM domain protein [Ammonifex degensii KC4]
 gi|260865260|gb|ACX52366.1| Radical SAM domain protein [Ammonifex degensii KC4]
          Length = 330

 Score = 35.0 bits (80), Expect = 7.6,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C      +      K       +   LIEE    G    +  + +
Sbjct: 11  CNLKC--------EHC------YRDAGTKKEAELVTSEGKALIEEIARAG---FKIMIFS 53

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
           GGEP+L+ D+  LI      G    + TNGT+
Sbjct: 54  GGEPILRPDLYSLIAHARSLGLRPVLGTNGTL 85


>gi|253702721|ref|YP_003023910.1| radical SAM protein [Geobacter sp. M21]
 gi|251777571|gb|ACT20152.1| Radical SAM domain protein [Geobacter sp. M21]
          Length = 430

 Score = 35.0 bits (80), Expect = 7.6,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 17/101 (16%)

Query: 30  SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
             CN+            C  C   F G  G   G  +  +   LI +       +  +  
Sbjct: 61  QNCNMACCY--------CWNCGGTF-GKPGHLMGEKSAQRAVKLILDLVQESNADKIFIN 111

Query: 90  LTGGEPLLQ------VDVPLIQ--ALNKRGFEIAVETNGTI 122
             GGEPLL       + + L+Q  A   + F + ++TNGT+
Sbjct: 112 FYGGEPLLDFPILTKITLELLQHEARLAKNFYLTLDTNGTL 152


>gi|88854900|ref|ZP_01129566.1| N-acyl-L-amino acid amidohydrolase [marine actinobacterium
           PHSC20C1]
 gi|88816061|gb|EAR25917.1| N-acyl-L-amino acid amidohydrolase [marine actinobacterium
           PHSC20C1]
          Length = 394

 Score = 35.0 bits (80), Expect = 7.6,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 59  GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ----ALNKRGFEI 114
            T   R  + +  +                 +T GEP+L  D  L+     AL+ +G ++
Sbjct: 265 STSEDRLTIARELERTVRLVAEANYCTGTVEITQGEPVLSNDPELVGLVDPALHAQGLDV 324


>gi|75760857|ref|ZP_00740872.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228967829|ref|ZP_04128843.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|74491671|gb|EAO54872.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228791879|gb|EEM39467.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 339

 Score = 35.0 bits (80), Expect = 7.6,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L +     G ++ R   +TG
Sbjct: 24  DRCNFRCTYCMPAEIFGPD--YAFLKDEF--LLTFDEIERLAKLFVNIGVRKIR---ITG 76

Query: 93  GEPLLQVDV-PLIQALNKRG--FEIAVETN 119
           GEPLL+ D+  LI  L K     +I + TN
Sbjct: 77  GEPLLRKDLTKLIARLVKIDGLIDIGLTTN 106


>gi|325849615|ref|ZP_08170853.1| radical SAM domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480096|gb|EGC83173.1| radical SAM domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 442

 Score = 35.0 bits (80), Expect = 7.6,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 14/103 (13%)

Query: 32  CNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEGR 86
           CN+      D  +A   +C+ C           G   N+  +Q+ D+I +    G     
Sbjct: 104 CNIPWTILLDPTTACNLKCKGC------WAAEYGNSLNLSYEQIDDIISQGKELGIYFY- 156

Query: 87  YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGID 129
             + TGGEPL++    L         E  + TN T+   + ID
Sbjct: 157 --IFTGGEPLVRKKDILKICEKHNDCEFLIFTNSTLIDEEFID 197


>gi|258620087|ref|ZP_05715126.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258587445|gb|EEW12155.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 395

 Score = 35.0 bits (80), Expect = 7.6,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 42  RLSAQCRFCD--TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-- 97
           + +  C +C                   D L  LI+  +I  EK+  Y    GGEP L  
Sbjct: 11  KCNINCEYCYYLEKETFFHHKDKTCITYDTLEQLIKS-YINQEKDDIYFTWQGGEPTLSG 69

Query: 98  ----QVDVPLIQALNKRGFEIA--VETNGTI 122
               +  + L QA   RG  I   ++TNGT+
Sbjct: 70  IEFFEKVIELQQAF-SRGKRIHNAIQTNGTL 99


>gi|257094383|ref|YP_003168024.1| molybdenum cofactor biosynthesis protein A [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046907|gb|ACV36095.1| molybdenum cofactor biosynthesis protein A [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 359

 Score = 35.0 bits (80), Expect = 7.6,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 15/98 (15%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
            R S          DR   +C +C    +  + T   R  V  L + +       +    
Sbjct: 45  IRLS--------ITDRCDFRCSYC----MAEEMTFLPRAQVLTLEECLRIAGTFVDLGVT 92

Query: 87  YCVLTGGEPLL-QVDVPLIQALNKRG--FEIAVETNGT 121
              +TGGEPL+    + L++ +       E+ + TNG+
Sbjct: 93  KVRVTGGEPLVRHNAIWLLERIAGLSGLKELVITTNGS 130


>gi|170290638|ref|YP_001737454.1| radical SAM domain-containing protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174718|gb|ACB07771.1| Radical SAM domain protein [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 326

 Score = 35.0 bits (80), Expect = 7.6,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 66  NVDQLADLIEEQWITGEKEGR-----YCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETN 119
           +  +  +L  E W    K            TGGEP L +  V L+    K G    + TN
Sbjct: 26  SPRETEELSTEDWKRVLKIFHGLGVPQVTFTGGEPTLREDLVDLVSEAQKLGMVSGIVTN 85

Query: 120 GTI 122
           GT+
Sbjct: 86  GTL 88


>gi|167755395|ref|ZP_02427522.1| hypothetical protein CLORAM_00909 [Clostridium ramosum DSM 1402]
 gi|167704334|gb|EDS18913.1| hypothetical protein CLORAM_00909 [Clostridium ramosum DSM 1402]
          Length = 299

 Score = 35.0 bits (80), Expect = 7.6,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118
           +G    +D++     +     E+      ++GGE + Q      L+  L K    +A+ET
Sbjct: 103 EGEYKTIDEIVTTCLQDKDFYEESNGGITISGGEGMSQPAFLFHLVNELKKHQLHLAIET 162

Query: 119 NGTIE 123
            G IE
Sbjct: 163 TGYIE 167


>gi|145295336|ref|YP_001138157.1| molybdenum cofactor biosynthesis protein A [Corynebacterium
           glutamicum R]
 gi|166217248|sp|A4QDF8|MOAA_CORGB RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|140845256|dbj|BAF54255.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 377

 Score = 35.0 bits (80), Expect = 7.6,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 17/91 (18%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE----EQWITGEKEGRYCVLTGGEPL 96
           DR + +C +C      +          +Q  +  E          +   R    TGGEPL
Sbjct: 59  DRCNLRCTYC------MPAEGLEWLPTEQTLNDAEVLRLLHIAVVKLGIRQIRFTGGEPL 112

Query: 97  LQVDVPLI----QALN-KRGFEIAV--ETNG 120
           L+ ++  I     AL    G ++ +   TNG
Sbjct: 113 LRKNLEDIIAGTAALRTDEGEKVHIALTTNG 143


>gi|50122553|ref|YP_051720.1| coproporphyrinogen III oxidase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613079|emb|CAG76530.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Pectobacterium atrosepticum SCRI1043]
          Length = 379

 Score = 35.0 bits (80), Expect = 7.6,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91
            L           +C +CD +   ++G    +  VD L   ++           + + + 
Sbjct: 6   PLSLYIHIPWCVQKCPYCDFNSHALKGDVPHQEYVDHLLADLDADLPLAGGRALHSIFIG 65

Query: 92  GGEPLLQVDVPLIQALNK---------RGFEIAVETN-GTIEP 124
           GG P L +    +QAL              EI +E N GT+E 
Sbjct: 66  GGTPSL-LSAEAMQALLDGVRARIPLTPDAEITMEANPGTVEA 107


>gi|320161385|ref|YP_004174609.1| molybdenum cofactor biosynthesis protein A [Anaerolinea thermophila
           UNI-1]
 gi|319995238|dbj|BAJ64009.1| molybdenum cofactor biosynthesis protein A [Anaerolinea thermophila
           UNI-1]
          Length = 328

 Score = 34.6 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLT 91
           N       DR + +C +C    +  QG     ++ + +  +++E   +  E+      LT
Sbjct: 11  NYLRISVTDRCNLRCVYC----MPPQGIPLTSHDAIMRYEEIVEVVRVAAEQGITDIRLT 66

Query: 92  GGEPLLQVDV-PLIQALNK-RGFE-IAVETNG 120
           GGEPL ++ +  L+  +    G   I++ TNG
Sbjct: 67  GGEPLARLGITELVHMIAAVPGIRDISMTTNG 98


>gi|260425055|ref|ZP_05779112.1| radical SAM domain protein [Dialister invisus DSM 15470]
 gi|260404024|gb|EEW97571.1| radical SAM domain protein [Dialister invisus DSM 15470]
          Length = 276

 Score = 34.6 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 14/68 (20%)

Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
           VF  F+GCNL            C +C  ++   +  +G   +V++LA++  E    G  
Sbjct: 26 TVF--FAGCNL-----------SCVYC-QNYEISELRRGIEISVERLAEIYRELIARGAH 71

Query: 84 EGRYCVLT 91
                 T
Sbjct: 72 NIDLVTPT 79


>gi|258514538|ref|YP_003190760.1| Radical SAM domain-containing protein [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778243|gb|ACV62137.1| Radical SAM domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 330

 Score = 34.6 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 47  CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQ 105
           C+ C   +           N  +   LI+E    G    +  + +GGEPL++ D+  L++
Sbjct: 15  CKHC---YRDAGAAVEEELNTTEGKSLIDEIVKAG---FKIMIFSGGEPLMRPDIFELVE 68

Query: 106 ALNKRGFEIAVETNGTI 122
               +G      TNG++
Sbjct: 69  YAASQGLRPVFGTNGSL 85


>gi|302333902|gb|ADL24095.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 309

 Score = 34.6 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 14/68 (20%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-------IQALNKRGF 112
            K      D++A + +     G K+ R   +TGGEPL++ D+ L       I  +   G 
Sbjct: 14  PKNELLTFDEMARIAKVYAELGVKKIR---ITGGEPLMRRDLDLLIAKLNQIDGIEDIGL 70

Query: 113 EIAVETNG 120
                TNG
Sbjct: 71  T----TNG 74


>gi|326316277|ref|YP_004233949.1| radical SAM enzyme, Cfr family [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373113|gb|ADX45382.1| radical SAM enzyme, Cfr family [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 373

 Score = 34.6 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 14/101 (13%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLAD-LIEEQWITGEKEGRYCVLTG 92
               Q   +  CRFC T   G     T G        A+  +  +  T E+     V+ G
Sbjct: 104 CISSQAGCAVGCRFCSTGHQGFSRNLTSGEIVAQLWFAEHALRARLGTQERVISNVVMMG 163

Query: 93  -GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123
            GEPL Q    L+ AL       G+      + V T+G + 
Sbjct: 164 MGEPL-QNYTALVPALRTMLDDHGYGLSRRRLTVSTSGVVP 203


>gi|167623296|ref|YP_001673590.1| ribosomal RNA large subunit methyltransferase N [Shewanella
           halifaxensis HAW-EB4]
 gi|205829881|sp|B0TLI1|RLMN_SHEHH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|167353318|gb|ABZ75931.1| radical SAM enzyme, Cfr family [Shewanella halifaxensis HAW-EB4]
          Length = 373

 Score = 34.6 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 20/109 (18%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL-------ADLIEEQWITGEKEGRYC 88
               Q   + +C FC T   G          V ++       AD I     TGE+     
Sbjct: 107 CVSSQVGCALECTFCSTAQQGFN----RNLTVAEIVGQIWRVADFIGFVKDTGERPITNV 162

Query: 89  VLTG-GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI 128
           V+ G GEPLL +   +P +   L+  GF      + + T+G +     +
Sbjct: 163 VMMGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL 211


>gi|157961130|ref|YP_001501164.1| ribosomal RNA large subunit methyltransferase N [Shewanella
           pealeana ATCC 700345]
 gi|205829883|sp|A8H242|RLMN_SHEPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157846130|gb|ABV86629.1| radical SAM enzyme, Cfr family [Shewanella pealeana ATCC 700345]
          Length = 373

 Score = 34.6 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 20/109 (18%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL-------ADLIEEQWITGEKEGRYC 88
               Q   + +C FC T   G          V ++       AD I     TGE+     
Sbjct: 107 CVSSQVGCALECTFCSTAQQGFN----RNLTVAEIVGQIWRVADFIGFVKDTGERPITNV 162

Query: 89  VLTG-GEPLLQVD--VPLIQ-ALNKRGF-----EIAVETNGTIEPPQGI 128
           V+ G GEPLL +   +P +   L+  GF      + + T+G +     +
Sbjct: 163 VMMGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL 211


>gi|118475331|ref|YP_891425.1| molybdenum cofactor biosynthesis protein A [Campylobacter fetus
           subsp. fetus 82-40]
 gi|261886248|ref|ZP_06010287.1| molybdenum cofactor biosynthesis protein A [Campylobacter fetus
           subsp. venerealis str. Azul-94]
 gi|166217242|sp|A0RMJ2|MOAA_CAMFF RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|118414557|gb|ABK82977.1| molybdenum cofactor biosynthesis protein A [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 322

 Score = 34.6 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           +R + +CR+C  D  F           + +++ + I+     G K+ R   LTGGEPL++
Sbjct: 19  ERCNFRCRYCMPDEPF--KDAGHSNVLSYEEMFEFIKICLDNGVKKIR---LTGGEPLVR 73

Query: 99  VDVP-LIQALN--KRGFEIAVETNG 120
             V   +  +N  K G ++A+ TNG
Sbjct: 74  KGVENFVAMINGYKSGLDLAMTTNG 98


>gi|120610108|ref|YP_969786.1| radical SAM protein [Acidovorax citrulli AAC00-1]
 gi|205829658|sp|A1TM24|RLMN_ACIAC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|120588572|gb|ABM32012.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax citrulli AAC00-1]
          Length = 373

 Score = 34.6 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 14/101 (13%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLAD-LIEEQWITGEKEGRYCVLTG 92
               Q   +  CRFC T   G     T G        A+  +  +  T E+     V+ G
Sbjct: 104 CISSQAGCAVGCRFCSTGHQGFSRNLTSGEIVAQLWFAEHALRARLGTQERVISNVVMMG 163

Query: 93  -GEPLLQVDVPLIQALN----KRGF-----EIAVETNGTIE 123
            GEPL Q    L+ AL       G+      + V T+G + 
Sbjct: 164 MGEPL-QNYTALVPALRTMLDDHGYGLSRRRLTVSTSGVVP 203


>gi|258624888|ref|ZP_05719816.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258582886|gb|EEW07707.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 395

 Score = 34.6 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 42  RLSAQCRFCD--TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-- 97
           + +  C +C                   D L  LI+  +I  EK+  Y    GGEP L  
Sbjct: 11  KCNINCEYCYYLEKETFFHHKDKTCITYDTLEQLIKS-YINQEKDDIYFTWQGGEPTLSG 69

Query: 98  ----QVDVPLIQALNKRGFEIA--VETNGTI 122
               +  + L QA   RG  I   ++TNGT+
Sbjct: 70  IEFFEKVIELQQAF-SRGKRIHNAIQTNGTL 99


>gi|296129692|ref|YP_003636942.1| carbamoyl-phosphate synthase, large subunit [Cellulomonas flavigena
           DSM 20109]
 gi|296021507|gb|ADG74743.1| carbamoyl-phosphate synthase, large subunit [Cellulomonas flavigena
           DSM 20109]
          Length = 1111

 Score = 34.6 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 11/78 (14%)

Query: 52  TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111
           TD+             + + ++ E +   G   G    L GG    Q  + L Q L+  G
Sbjct: 603 TDYDTADRLYFEPLTFEDVLEVYEAEKAAGPVAGLIVTL-GG----QTPLSLAQRLSDAG 657

Query: 112 FEIAVETNGTIEPPQGID 129
             I     GT  PP  ID
Sbjct: 658 LPIL----GT--PPAAID 669


>gi|168206415|ref|ZP_02632420.1| putative heme biosynthesis protein [Clostridium perfringens E str.
           JGS1987]
 gi|170662102|gb|EDT14785.1| putative heme biosynthesis protein [Clostridium perfringens E str.
           JGS1987]
          Length = 380

 Score = 34.6 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 11/92 (11%)

Query: 33  NLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            LW G +   + + +C  C          KG  Y++D +   +++     E +  +  L+
Sbjct: 49  PLWVGFKITPICNMKCEHC------WADLKGKEYSLDNIKKALDKL---SEIQILHLTLS 99

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           GGEP ++ D   +     ++   + + TNG++
Sbjct: 100 GGEPFIRNDWEEIFSYAKEKRMCLEIFTNGSL 131


>gi|157373408|ref|YP_001472008.1| putative pyruvate formate lyase activating enzyme [Shewanella
           sediminis HAW-EB3]
 gi|157315782|gb|ABV34880.1| conserved hypothetical pyruvate formate lyase activating enzyme
           [Shewanella sediminis HAW-EB3]
          Length = 298

 Score = 34.6 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 45/144 (31%), Gaps = 49/144 (34%)

Query: 22  RVAVFCRFSGCNLWSGREQD----------------------------------RLSAQC 47
           R+ VF    GCN       +                                    S  C
Sbjct: 29  RLVVF--LQGCNYNCKNCHNPHTIDMCDSCGDCIAHCPTQALSMESIDGKDAIRWNSDLC 86

Query: 48  RFCDTDFVGIQG---TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102
             CDT           K   YNV Q+ ++I +Q            ++GGE  LQ+   + 
Sbjct: 87  SGCDTCLAVCPKQSTPKTQEYNVTQMLEMIRKQASFISG----ITISGGEATLQLHFIIA 142

Query: 103 LIQALNK----RGFEIAVETNGTI 122
           L +A+      +     +++NG++
Sbjct: 143 LFKAIKSSDDLQHLSCMLDSNGSL 166


>gi|152979335|ref|YP_001344964.1| molybdenum cofactor biosynthesis protein A [Actinobacillus
           succinogenes 130Z]
 gi|171704353|sp|A6VPY2|MOAA_ACTSZ RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|150841058|gb|ABR75029.1| molybdenum cofactor biosynthesis protein A [Actinobacillus
           succinogenes 130Z]
          Length = 336

 Score = 34.6 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 8/84 (9%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           D  + +C +C  D       +     VD++   +      G ++ R   +TGGEP L+ D
Sbjct: 30  DVCNFRCNYCLPDGYHPSHERDKFLTVDEIRRAVSAFAAMGAQKVR---ITGGEPTLRKD 86

Query: 101 ----VPLIQALNKRGFEIAVETNG 120
                  I AL+     +A+ TNG
Sbjct: 87  FLQITENITALDGI-RHVALTTNG 109


>gi|212224951|ref|YP_002308187.1| hypothetical protein TON_1800 [Thermococcus onnurineus NA1]
 gi|212009908|gb|ACJ17290.1| hypothetical protein, conserved [Thermococcus onnurineus NA1]
          Length = 360

 Score = 34.6 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 47  CRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--LQVDVPL 103
           C +C  + +            V ++ D+IEE  I   +      +TGG+PL  L      
Sbjct: 39  CFYCPLSPWRREDVVYANERPVKRIDDIIEEAKIQEARGAG---VTGGDPLARLDRTAEY 95

Query: 104 IQALNK---RGFEIAVETNGTI 122
           I+AL +     F + + T G +
Sbjct: 96  IRALKEQFGEKFHVHLYTTGAL 117


>gi|254422832|ref|ZP_05036550.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp. PCC
           7335]
 gi|196190321|gb|EDX85285.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp. PCC
           7335]
          Length = 334

 Score = 34.6 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 14/88 (15%)

Query: 41  DRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
           DR + QC +C     D  +   +       + D++  L+   +I          LTGGEP
Sbjct: 19  DRCNFQCVYCMPEGVDLQYALKEHW----LSQDEILQLLRGVFIPLGFTRFR--LTGGEP 72

Query: 96  LLQVDV-PLIQALNKRGFE--IAVETNG 120
           LL+ ++  L++A+ +      +A+ TNG
Sbjct: 73  LLRPEIVDLVRAITQLPQTEDLAITTNG 100


>gi|218233618|ref|YP_002369523.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus B4264]
 gi|218161575|gb|ACK61567.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus B4264]
          Length = 337

 Score = 34.6 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L +     G ++ R   +TG
Sbjct: 22  DRCNFRCTYCMPAEIFGPD--YAFLKDEF--LLTFDEIERLAKLFVNIGVRKIR---ITG 74

Query: 93  GEPLLQVDV-PLIQALNKRG--FEIAVETN 119
           GEPLL+ D+  LI  L K     +I + TN
Sbjct: 75  GEPLLRKDLTKLIARLVKIDGLIDIGLTTN 104


>gi|149635693|ref|XP_001506834.1| PREDICTED: similar to development and differentiation enhancing
           factor 2 [Ornithorhynchus anatinus]
          Length = 604

 Score = 34.6 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 24/113 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C++C     G+  T   + ++    +++    +  ++      LT
Sbjct: 50  CNL-----------RCQYC-MPEEGVPLTP--KADLLTTPEILRLARLFVQEGVDKIRLT 95

Query: 92  GGEPLLQVD-VPLIQALNKRG--FEIAVETNG---TIEPP----QGIDWICVS 134
           GGEPL++ D V ++  L +      +AV TNG       P     G+D I VS
Sbjct: 96  GGEPLIRPDVVDIVAQLRQLPGLKTLAVTTNGLNLARMLPRLQEAGLDAINVS 148


>gi|145591638|ref|YP_001153640.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145283406|gb|ABP50988.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 302

 Score = 34.6 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 46/131 (35%), Gaps = 25/131 (19%)

Query: 15  GE-GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73
           GE G +   +AVF  + GC           S  C FC       Q  +   Y        
Sbjct: 71  GEYGYYN--LAVF--YGGC-----------SLDCLFC-------QNWQHREYPSRPKLVS 108

Query: 74  IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN--KRGFEIAVETNGTIEPPQGIDWI 131
           ++E               GG+P  Q    L+ A    ++G  +  ET+G + P      +
Sbjct: 109 VKELEEAMHNRVTCICFFGGDPAPQTIHALLVAKKATEKGVRVCWETSGQLAPHLLDKVV 168

Query: 132 CVSPKAGCDLK 142
            +S K G  +K
Sbjct: 169 EMSLKTGGIVK 179


>gi|329121723|ref|ZP_08250340.1| pyruvate formate-lyase activating enzyme [Dialister micraerophilus
           DSM 19965]
 gi|327468193|gb|EGF13679.1| pyruvate formate-lyase activating enzyme [Dialister micraerophilus
           DSM 19965]
          Length = 305

 Score = 34.6 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 14/68 (20%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            VF  F+GCNL            C +C  ++   +  KG   +V++L ++  E    G  
Sbjct: 57  TVF--FAGCNL-----------SCVYC-QNYEISELRKGKEISVERLKEIYHELIARGAH 102

Query: 84  EGRYCVLT 91
                  T
Sbjct: 103 NIDLVTPT 110


>gi|298675055|ref|YP_003726805.1| molybdenum cofactor biosynthesis protein A [Methanohalobium
           evestigatum Z-7303]
 gi|298288043|gb|ADI74009.1| molybdenum cofactor biosynthesis protein A [Methanohalobium
           evestigatum Z-7303]
          Length = 308

 Score = 34.6 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 24/110 (21%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C         +     +VD ++ ++      G  + ++   +
Sbjct: 32  CNL-----------NCIYC---HHEGNSSSKKEMSVDDISKIVHTASCYGVNKIKF---S 74

Query: 92  GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP-------QGIDWICVS 134
           GGEPL++ D   I        EI+  TNG +           G+D I +S
Sbjct: 75  GGEPLVRDDFEQILQSLPPLKEISATTNGVLLKDRAHELKAAGLDRINIS 124


>gi|291546221|emb|CBL19329.1| Radical SAM superfamily [Ruminococcus sp. SR1/5]
          Length = 169

 Score = 34.6 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 14/71 (19%)

Query: 31  GCNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRYNV--DQLADLIEEQWITGEKEG 85
           GCN+      D  SA    C  C           G + N+  D++ D+I +    G    
Sbjct: 103 GCNIPWAILLDPTSACNLHCTGC------WAAEYGNKLNLTYDEIDDIIRQGKELGVYMY 156

Query: 86  RYCVLTGGEPL 96
              + TGGEPL
Sbjct: 157 ---IYTGGEPL 164


>gi|20141181|sp|Q51741|CMO_PYRFU RecName: Full=Tungsten-containing aldehyde ferredoxin
           oxidoreductase cofactor-modifying protein
          Length = 356

 Score = 34.6 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 18/93 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   F      + G  + D    ++++       E +     
Sbjct: 12  CNL-----------RCEMC---FKQHWEDEEGDMDYDLFLKILDDA--EKFPELKMIYFG 55

Query: 92  G-GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           G GEP +    + +++ + KRGF + + TNGT+
Sbjct: 56  GIGEPTVHPRFMDMVREVKKRGFALGISTNGTL 88


>gi|86145592|ref|ZP_01063922.1| hypothetical protein MED222_01522 [Vibrio sp. MED222]
 gi|218708638|ref|YP_002416259.1| hypothetical protein VS_0616 [Vibrio splendidus LGP32]
 gi|254807223|sp|B7VJT5|RLMN_VIBSL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|85836563|gb|EAQ54689.1| hypothetical protein MED222_01522 [Vibrio sp. MED222]
 gi|218321657|emb|CAV17609.1| Predicted Fe-S-cluster redox enzyme [Vibrio splendidus LGP32]
          Length = 380

 Score = 34.6 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 19/111 (17%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI---TGEKEGRYCVLTG 92
               Q   + +C+FC T   G          V Q+     E  +   TG +     V+ G
Sbjct: 107 CVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIGLEKETGRRPITNVVMMG 166

Query: 93  -GEPLLQ-----VDVPLIQALNKRGF-----EIAVETNGTIEPPQGIDWIC 132
            GEPLL        + L+  L+  GF      + V T+G      G+D + 
Sbjct: 167 MGEPLLNMKNLIPSLELM--LDDLGFSLSKRRVTVSTSG---VVSGLDQMT 212


>gi|84387623|ref|ZP_00990640.1| hypothetical protein V12B01_09136 [Vibrio splendidus 12B01]
 gi|84377468|gb|EAP94334.1| hypothetical protein V12B01_09136 [Vibrio splendidus 12B01]
          Length = 380

 Score = 34.6 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 19/111 (17%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI---TGEKEGRYCVLTG 92
               Q   + +C+FC T   G          V Q+     E  +   TG +     V+ G
Sbjct: 107 CVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIGLEKDTGRRPITNVVMMG 166

Query: 93  -GEPLLQ-----VDVPLIQALNKRGF-----EIAVETNGTIEPPQGIDWIC 132
            GEPLL        + L+  L+  GF      + V T+G      G+D + 
Sbjct: 167 MGEPLLNMKNLIPSLELM--LDDLGFSLSKRRVTVSTSG---VVSGLDQMT 212


>gi|51893473|ref|YP_076164.1| Fe-S oxidoreductase [Symbiobacterium thermophilum IAM 14863]
 gi|51857162|dbj|BAD41320.1| Fe-S oxidoreductase [Symbiobacterium thermophilum IAM 14863]
          Length = 424

 Score = 34.6 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 18/94 (19%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
            + CNL           +C  C   + G         +++ +  +  E    GE    + 
Sbjct: 83  TAKCNL-----------RCIGC---WAG-DYELRPELSLETMDRICRE---GGELGIHFY 124

Query: 89  VLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
           V++GGEP+++ +  L  A         + +NGT+
Sbjct: 125 VISGGEPMVRQNDLLELARRHPDKMFHIYSNGTL 158


>gi|66045564|ref|YP_235405.1| molybdenum cofactor biosynthesis protein A [Pseudomonas syringae
           pv. syringae B728a]
 gi|302187325|ref|ZP_07263998.1| molybdenum cofactor biosynthesis protein A [Pseudomonas syringae
           pv. syringae 642]
 gi|75502205|sp|Q4ZU05|MOAA_PSEU2 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|63256271|gb|AAY37367.1| Radical SAM:Molybdenum cofactor synthesis C [Pseudomonas syringae
           pv. syringae B728a]
 gi|330900547|gb|EGH31966.1| molybdenum cofactor biosynthesis protein A [Pseudomonas syringae
           pv. japonica str. M301072PT]
 gi|330974255|gb|EGH74321.1| molybdenum cofactor biosynthesis protein A [Pseudomonas syringae
           pv. aceris str. M302273PT]
 gi|330979625|gb|EGH78144.1| molybdenum cofactor biosynthesis protein A [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 332

 Score = 34.6 bits (79), Expect = 8.1,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C    +  + T   R  +  L ++++          R   LTGGEPL++  
Sbjct: 23  DRCDFRCVYC----MAEEMTFLPRQQILSLEEILQVAERFVALGTRKIRLTGGEPLVRAG 78

Query: 101 VP-LIQALNKR-GF-EIAVETNGT 121
           V  L + +    G  E+ + TNG+
Sbjct: 79  VVGLCEKIAALPGLRELCMTTNGS 102


>gi|291549884|emb|CBL26146.1| GTP cyclohydrolase subunit MoaA [Ruminococcus torques L2-14]
          Length = 329

 Score = 34.6 bits (79), Expect = 8.1,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 26/172 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA--DLIEEQ-WITGEKEGRYCVLTGGEPLL 97
           DR + +C +C      +      +   +Q+   D IE    I+ E       LTGGEPL+
Sbjct: 18  DRCNLRCVYC------MPEEGIEQLPHEQILTFDEIERVCRISTELGISKIKLTGGEPLV 71

Query: 98  QVDVP-LIQALNK-RGFE-IAVETNGTI-------EPPQGIDWICVS---PKAGCDLKIK 144
           +  +P L+  + +  G E + + TNG +          QG+D + +S       C   + 
Sbjct: 72  RKGLPDLLGKIKRIPGIEQVTLTTNGILLKNQLDELMRQGLDAVNISIDTLDETCYHTVT 131

Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196
              EL      + V+ E Y     +   + PM+    EE   +A  Y  ++P
Sbjct: 132 RCGELNQALEGLQVALE-YPNLRVKLNCV-PMNQSE-EEYIQMA-EYAKEHP 179


>gi|282600947|ref|ZP_05980240.2| radical SAM enzyme, Cfr family [Subdoligranulum variabile DSM
           15176]
 gi|282570117|gb|EFB75652.1| radical SAM enzyme, Cfr family [Subdoligranulum variabile DSM
           15176]
          Length = 345

 Score = 34.6 bits (79), Expect = 8.1,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 6/77 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N      Q   +  CRFC       Q  +       ++A  I        +   + VL G
Sbjct: 102 NTVCVSTQVGCAMGCRFC----ASTQAGRVRDLTAGEIAAEIYTAQKDSGERVSHIVLMG 157

Query: 93  -GEPLLQVDVPLIQALN 108
            GEPL      ++  L 
Sbjct: 158 IGEPL-HNFDNVMDFLE 173


>gi|223935844|ref|ZP_03627759.1| Radical SAM domain protein [bacterium Ellin514]
 gi|223895445|gb|EEF61891.1| Radical SAM domain protein [bacterium Ellin514]
          Length = 508

 Score = 34.6 bits (79), Expect = 8.1,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 10/78 (12%)

Query: 31  GCNLWSGREQDRLSAQCR-------FCDT--DFVGIQGTKGGRYNVDQLADLIEEQWITG 81
           GC    G  QD     C         CD       ++  +      D+    ++   +  
Sbjct: 89  GCPSDCGLCQDHQQHTCSPIIEINDVCDLTCPVCIVRNQQRYAMTFDEFKAAVDA-IVAA 147

Query: 82  EKEGRYCVLTGGEPLLQV 99
           E E    +L+GGEP L  
Sbjct: 148 EGELPILLLSGGEPTLHK 165


>gi|218899882|ref|YP_002448293.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus G9842]
 gi|218545891|gb|ACK98285.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus G9842]
          Length = 337

 Score = 34.6 bits (79), Expect = 8.1,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L +     G ++ R   +TG
Sbjct: 22  DRCNFRCTYCMPAEIFGPD--YAFLKDEF--LLTFDEIERLAKLFVNIGVRKIR---ITG 74

Query: 93  GEPLLQVDV-PLIQALNKRG--FEIAVETN 119
           GEPLL+ D+  LI  L K     +I + TN
Sbjct: 75  GEPLLRKDLTKLIARLVKIDGLIDIGLTTN 104


>gi|18976716|ref|NP_578073.1| tungsten-containing aldehyde ferredoxin oxidoreductase cofactor
           modifying protein [Pyrococcus furiosus DSM 3638]
 gi|18892298|gb|AAL80468.1| tungsten-containing aldehyde ferredoxin oxidoreductase cofactor
           modifying protein [Pyrococcus furiosus DSM 3638]
          Length = 377

 Score = 34.6 bits (79), Expect = 8.1,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 18/93 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   F      + G  + D    ++++       E +     
Sbjct: 33  CNL-----------RCEMC---FKQHWEDEEGDMDYDLFLKILDDA--EKFPELKMIYFG 76

Query: 92  G-GEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
           G GEP +    + +++ + KRGF + + TNGT+
Sbjct: 77  GIGEPTVHPRFMDMVREVKKRGFALGISTNGTL 109


>gi|25028918|ref|NP_738972.1| putative anaerobic ribonucleoside-triphosphate reductase activating
           protein [Corynebacterium efficiens YS-314]
 gi|259507982|ref|ZP_05750882.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Corynebacterium efficiens YS-314]
 gi|23494205|dbj|BAC19172.1| putative anaerobic ribonucleoside-triphosphate reductase activating
           protein [Corynebacterium efficiens YS-314]
 gi|259164477|gb|EEW49031.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Corynebacterium efficiens YS-314]
          Length = 195

 Score = 34.6 bits (79), Expect = 8.1,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 33/106 (31%), Gaps = 28/106 (26%)

Query: 10  FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
           F TL GEG                L            C  C       +G         +
Sbjct: 31  FQTLDGEG----------------LRCSLYVSYCPFNCLGCYNRAAQKKGYGMEYTT--E 72

Query: 70  LADLIEEQWITGEKEGRYC---VLTGGEPLLQV--DVPLIQALNKR 110
           L D I      G+  GR+     L GGEP L     +PL++ + + 
Sbjct: 73  LEDRI-----LGDLAGRHVAGLTLVGGEPFLSARYLLPLVRRIRRE 113


>gi|15668800|ref|NP_247603.1| hypothetical protein MJ_0619 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2496079|sp|Q58036|Y619_METJA RecName: Full=Uncharacterized protein MJ0619
 gi|1591330|gb|AAB98614.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 506

 Score = 34.6 bits (79), Expect = 8.1,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 19/106 (17%)

Query: 31  GCNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           GC    G                 +R +  C  C   F     +        +    + E
Sbjct: 72  GCPYDCGLCPNHKSTTILANIDVTNRCNLNCPIC---FANANKSGKVYEPSFEDIKRMME 128

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
                          GGEP ++ D+P LI+     GF  + + TNG
Sbjct: 129 NLRKEIPPTPAIQFAGGEPTVRSDLPELIKLARDMGFLHVQLATNG 174


>gi|118578746|ref|YP_899996.1| molybdenum cofactor biosynthesis protein A [Pelobacter propionicus
           DSM 2379]
 gi|118501456|gb|ABK97938.1| GTP cyclohydrolase subunit MoaA [Pelobacter propionicus DSM 2379]
          Length = 326

 Score = 34.6 bits (79), Expect = 8.1,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 18/181 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       DR + +C +C      +        + ++L  + E     G ++ R   +TG
Sbjct: 12  NYLRLSITDRCNMRCFYCMPSVGVVDKGHKSVLSYEELLLIAETAVKLGIEKIR---ITG 68

Query: 93  GEPLLQVDVP-LIQALNK-RGFE-IAVETNGTIEPPQGIDW-------ICVSPKAGCDL- 141
           GEPL+++ V   ++ L    G + +AV TNG +      D        + VS  +     
Sbjct: 69  GEPLVRIGVVGFLERLAAIPGLQHLAVTTNGLLLEEMASDLYRAGVQRLNVSLDSLNPET 128

Query: 142 --KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199
             KI  G +LK V   ++ +     GF   + ++  M G    E  + A     +    R
Sbjct: 129 FGKITRGGDLKKVLAGLDAA--ERAGFPPPKINVVTMRGVNDGEILDFAALTLTRGNPVR 186

Query: 200 L 200
            
Sbjct: 187 F 187


>gi|307947383|ref|ZP_07662717.1| mannose-6-phosphate isomerase [Roseibium sp. TrichSKD4]
 gi|307769525|gb|EFO28752.1| mannose-6-phosphate isomerase [Roseibium sp. TrichSKD4]
          Length = 123

 Score = 34.6 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHK 206
              +E N   A+      P  RLS+Q HK
Sbjct: 19  WKVVEANERYAVKTISVKPGQRLSLQLHK 47


>gi|289192507|ref|YP_003458448.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938957|gb|ADC69712.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
          Length = 519

 Score = 34.6 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 32/106 (30%), Gaps = 19/106 (17%)

Query: 31  GCNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
           GC    G                 +R +  C  C   F     +        +    + E
Sbjct: 86  GCPYDCGLCPNHKSTTILANIDVTNRCNLNCPIC---FANANKSGKVYEPSFEDIKRMME 142

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
                          GGEP ++ D+P LI+     GF  + V TNG
Sbjct: 143 NLRKEIPPTPAIQFAGGEPTVRSDLPELIKLARDMGFLHVQVATNG 188


>gi|21232371|ref|NP_638288.1| pyrroloquinoline quinone biosynthesis protein PqqE [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66767497|ref|YP_242259.1| pyrroloquinoline quinone biosynthesis protein PqqE [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|32363345|sp|Q8P6M7|PQQE_XANCP RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|81306523|sp|Q4UXI4|PQQE_XANC8 RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|21114146|gb|AAM42212.1| PqqE protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66572829|gb|AAY48239.1| PqqE protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 376

 Score = 34.6 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R    C +C               +      L+E+    G  +  +   +GGEP+L+ D+
Sbjct: 17  RCPLACPYCSNPIAL--AALREEMDTAGWRSLLEQAAEMGVLQAHF---SGGEPMLRKDL 71

Query: 102 P-LIQALNKRGFEIAVETNG 120
           P L+      G    + T+G
Sbjct: 72  PELVAHARALGLYSNLITSG 91


>gi|294629289|ref|ZP_06707849.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces sp.
           e14]
 gi|292832622|gb|EFF90971.1| oxygen-independent coproporphyrinogen III oxidase [Streptomyces sp.
           e14]
          Length = 413

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 10/87 (11%)

Query: 33  NLWSGREQDRLSAQCRFCD------TDFVGIQGTKGGRYN-VDQLADLIEEQWIT---GE 82
            L         + +C +CD      T+  G  G    R N  D LAD +           
Sbjct: 32  PLGFYLHVPYCATRCGYCDFNTYTATELRGTGGVLASRDNYADTLADEVRLARKVLGDDP 91

Query: 83  KEGRYCVLTGGEPLLQVDVPLIQALNK 109
           +E R   + GG P L     L++ L+ 
Sbjct: 92  REVRTVFVGGGTPTLLAAADLVRMLHA 118


>gi|289673534|ref|ZP_06494424.1| molybdenum cofactor biosynthesis protein A [Pseudomonas syringae
           pv. syringae FF5]
          Length = 310

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C    +  + T   R  +  L ++++          R   LTGGEPL++  
Sbjct: 23  DRCDFRCVYC----MAEEMTFLPRQQILSLEEILQVAERFVALGTRKIRLTGGEPLVRAG 78

Query: 101 VP-LIQALNKR-GF-EIAVETNGT 121
           V  L + +    G  E+ + TNG+
Sbjct: 79  VVGLCEKIAALPGLRELCMTTNGS 102


>gi|288559595|ref|YP_003423081.1| molybdopterin cofactor biosynthesis protein A MobA1
           [Methanobrevibacter ruminantium M1]
 gi|288542305|gb|ADC46189.1| molybdopterin cofactor biosynthesis protein A MobA1
           [Methanobrevibacter ruminantium M1]
          Length = 311

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 15/103 (14%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           +R +  C +C                 D++ ++       G ++ R   L+GGEPL++ D
Sbjct: 22  NRCNVNCIYC---HHDGMLDSSSEMTPDEIYEICRIAKKLGVEKIR---LSGGEPLVRPD 75

Query: 101 V-PLIQALNKRGFE-IAVETNGTI-------EPPQGIDWICVS 134
           +  +++ +N   F  I++ +NG             G+D I VS
Sbjct: 76  IVEIVEKVNSLDFRDISITSNGIFLDKLAGPLKDAGLDRINVS 118


>gi|283458054|ref|YP_003362665.1| coproporphyrinogen III oxidase [Rothia mucilaginosa DY-18]
 gi|283134080|dbj|BAI64845.1| coproporphyrinogen III oxidase [Rothia mucilaginosa DY-18]
          Length = 428

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 20/110 (18%)

Query: 30  SGC---NLWSGREQDRLSAQCRFCDTD-FVGIQGTKG---GRYNVDQLADLI-----EEQ 77
           +GC   +          S +C +CD + +       G   G Y  D +A+++      E 
Sbjct: 22  AGCETRDFSLYVHIPFCSVRCGYCDFNTYATEDFGNGIGLGTYADDAIAEILFAARTLET 81

Query: 78  WITGEKEGRYCVLTGGEPLLQVDVPLIQALNK--------RGFEIAVETN 119
               ++  R     GG P       L++ L           G E+  E N
Sbjct: 82  SGVAKRPMRTVFFGGGTPTKLPARDLVRILQAAIDVFGLVEGAEVTTEAN 131


>gi|255012918|ref|ZP_05285044.1| putative Fe-S oxidoreductase [Bacteroides sp. 2_1_7]
          Length = 391

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 11/93 (11%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R +A+C  C   +      K      D++  + E              ++GGEP L+ D+
Sbjct: 17  RCNAKCAMC--FYAQEMDKKQPDLTFDEIKKISETAGQFNRLW-----ISGGEPTLREDL 69

Query: 102 PLIQALNKRG---FEIAVETNGTIEPPQGIDWI 131
           P I  L  +     ++ + TNG ++P + ++W+
Sbjct: 70  PEILELFYKNNHIKDVNIPTNG-LKPDRIVEWV 101


>gi|228987980|ref|ZP_04148086.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228771784|gb|EEM20244.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 339

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L +     G ++ R   LTG
Sbjct: 24  DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKLFVSIGVRKIR---LTG 76

Query: 93  GEPLLQVDV-PLIQALNKRG--FEIAVETN 119
           GEPLL+ D+  LI  L K     +I + TN
Sbjct: 77  GEPLLRKDLTKLIARLVKIDGLLDIGLTTN 106


>gi|222098198|ref|YP_002532255.1| molybdenum cofactor biosynthesis protein a [Bacillus cereus Q1]
 gi|221242256|gb|ACM14966.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus Q1]
          Length = 334

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L +     G ++ R   LTG
Sbjct: 19  DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKLFVSIGVRKIR---LTG 71

Query: 93  GEPLLQVDV-PLIQALNKRG--FEIAVETN 119
           GEPLL+ D+  LI  L K     +I + TN
Sbjct: 72  GEPLLRKDLTKLIARLVKIDGLLDIGLTTN 101


>gi|206977358|ref|ZP_03238255.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           H3081.97]
 gi|217962214|ref|YP_002340784.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH187]
 gi|206744509|gb|EDZ55919.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus
           H3081.97]
 gi|217067222|gb|ACJ81472.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus AH187]
          Length = 337

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L +     G ++ R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKLFVSIGVRKIR---LTG 74

Query: 93  GEPLLQVDV-PLIQALNKRG--FEIAVETN 119
           GEPLL+ D+  LI  L K     +I + TN
Sbjct: 75  GEPLLRKDLTKLIARLVKIDGLLDIGLTTN 104


>gi|736276|emb|CAA56172.1| cofactor modifying protein [Pyrococcus furiosus DSM 3638]
          Length = 357

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 15/92 (16%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C   F      + G  + D    ++         +      +
Sbjct: 12  CNL-----------RCEMC---FKQHWEDEEGDMDYDLFLKILRRCREVSRAKDDILRRS 57

Query: 92  GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
            GEP +    + +++ + KRGF + + TNGT+
Sbjct: 58  IGEPTVHPRFMDMVREVKKRGFALGISTNGTL 89


>gi|62390085|ref|YP_225487.1| molybdenum cofactor biosynthesis protein A [Corynebacterium
           glutamicum ATCC 13032]
 gi|41325421|emb|CAF19901.1| MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A [Corynebacterium
           glutamicum ATCC 13032]
          Length = 402

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 17/91 (18%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG----EKEGRYCVLTGGEPL 96
           DR + +C +C      +          +Q  +  E   +      +   R    TGGEPL
Sbjct: 84  DRCNLRCTYC------MPAEGLEWLPTEQTLNDAEVLRLIRIAVVKLGIRQIRFTGGEPL 137

Query: 97  LQVDVPLI----QALN-KRGFEIAV--ETNG 120
           L+ ++  I     AL    G ++ +   TNG
Sbjct: 138 LRKNLEDIIAGTAALRTDEGEKVHIALTTNG 168


>gi|23308834|ref|NP_600423.2| molybdenum cofactor biosynthesis protein A [Corynebacterium
           glutamicum ATCC 13032]
 gi|24211974|sp|Q8NR60|MOAA_CORGL RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|21323964|dbj|BAB98590.1| Molybdenum cofactor biosynthesis enzyme [Corynebacterium glutamicum
           ATCC 13032]
          Length = 377

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 17/91 (18%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG----EKEGRYCVLTGGEPL 96
           DR + +C +C      +          +Q  +  E   +      +   R    TGGEPL
Sbjct: 59  DRCNLRCTYC------MPAEGLEWLPTEQTLNDAEVLRLIRIAVVKLGIRQIRFTGGEPL 112

Query: 97  LQVDVPLI----QALN-KRGFEIAV--ETNG 120
           L+ ++  I     AL    G ++ +   TNG
Sbjct: 113 LRKNLEDIIAGTAALRTDEGEKVHIALTTNG 143


>gi|47565151|ref|ZP_00236194.1| molybdopterin cofactor biosynthesis protein A [Bacillus cereus
           G9241]
 gi|47557937|gb|EAL16262.1| molybdopterin cofactor biosynthesis protein A [Bacillus cereus
           G9241]
          Length = 337

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L +     G ++ R   LTG
Sbjct: 22  DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKLFVSIGVRKIR---LTG 74

Query: 93  GEPLLQVDV-PLIQALNKRG--FEIAVETN 119
           GEPLL+ D+  LI  L K     +I + TN
Sbjct: 75  GEPLLRKDLTKLIARLVKIDGLLDIGLTTN 104


>gi|251781169|ref|ZP_04824089.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243085484|gb|EES51374.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 326

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C++C    +   G +  +++ +    ++I       +   R   +TGGEPL++ 
Sbjct: 18  DRCNLRCKYC----MPKDGVEYLQHDEILTFDEIITICKSMVKLGIRNIKITGGEPLVRK 73

Query: 100 DV-PLIQALNK-RGFE-IAVETNG 120
           D+  LI+ +   +G E + + +NG
Sbjct: 74  DIVNLIKDIKSIKGIENVTLTSNG 97


>gi|218781692|ref|YP_002433010.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218763076|gb|ACL05542.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 373

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 16/70 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            CR         +G   G  +     +L++      E      +LT
Sbjct: 40  CNLSC--------VHCR-----AAAEKGPYPGELDTQACFNLLD---GIAEVGQPIVILT 83

Query: 92  GGEPLLQVDV 101
           GGEPLL+ D+
Sbjct: 84  GGEPLLRPDI 93


>gi|170743835|ref|YP_001772490.1| pyrroloquinoline quinone biosynthesis protein PqqE
           [Methylobacterium sp. 4-46]
 gi|226704995|sp|B0UE13|PQQE_METS4 RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|168198109|gb|ACA20056.1| coenzyme PQQ biosynthesis protein E [Methylobacterium sp. 4-46]
          Length = 379

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 6/89 (6%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVD 100
           R   +C +C       +  +    +      ++ E    G     +  L+GGEP   Q  
Sbjct: 21  RCPLRCPYCSNPLELDK--RSAELDTATWQRVLGEAAALG---VLHVHLSGGEPTARQDI 75

Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGID 129
           V +  A    G    + T+G       +D
Sbjct: 76  VEITGACADLGLYSNLITSGVGGALAKLD 104


>gi|117619957|ref|YP_856292.1| hypothetical protein AHA_1756 [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|205829708|sp|A0KJ41|RLMN_AERHH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|117561364|gb|ABK38312.1| radical SAM enzyme, Cfr family [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 367

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 29/173 (16%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW-----ITGEKEGRYCVL 90
               Q   + +C+FC T   G            +++++I + W     + G++     V+
Sbjct: 106 CVSSQVGCALECKFCSTAQQGFN-------RNLKVSEIIGQVWRAAKIVGGKRPITNVVM 158

Query: 91  TG-GEPLLQVD--VPLIQALNKR-GF-----EIAVETNGTIEPPQGI-DWICVSPKAGCD 140
            G GEPLL +   VP ++ +    G+      + + T+G +     + D I V+      
Sbjct: 159 MGMGEPLLNLANVVPAMRLMMDDFGYGISKRRVTISTSGVVPALDMLGDQIDVA--LAIS 216

Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
           L      +L+     +N            R  L    G        + + Y  
Sbjct: 217 LHAPN-DKLRSEIMPINDKYNIEEFLAGVRRYL----GKSNANGGRVTVEYVL 264


>gi|188588003|ref|YP_001920495.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum
           E3 str. Alaska E43]
 gi|188498284|gb|ACD51420.1| molybdenum cofactor biosynthesis protein A [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 326

 Score = 34.6 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C++C    +   G +  +++ +    ++I       +   R   +TGGEPL++ 
Sbjct: 18  DRCNLRCKYC----MPKDGVEYLQHDEILTFDEIITICKSMVKLGIRNIKITGGEPLVRK 73

Query: 100 DV-PLIQALNK-RGFE-IAVETNG 120
           D+  LI+ +   +G E + + +NG
Sbjct: 74  DIVNLIKDIKSIKGIENVTLTSNG 97


>gi|220926474|ref|YP_002501776.1| molybdenum cofactor biosynthesis protein A [Methylobacterium
           nodulans ORS 2060]
 gi|219951081|gb|ACL61473.1| molybdenum cofactor biosynthesis protein A [Methylobacterium
           nodulans ORS 2060]
          Length = 346

 Score = 34.6 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C    +    T   + ++  L +L     +      R   +TGGEPL++ D
Sbjct: 36  DRCDLRCVYC----MAEDMTFLPKRDLLTLEELDRVCSVFVAHGVRKLRITGGEPLVRRD 91

Query: 101 VPLIQALNKRGF------EIAVETNGT 121
           +  +     R        E+ + TNGT
Sbjct: 92  IMHLFRGLSRHLASGALDELTLTTNGT 118


>gi|229198890|ref|ZP_04325581.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1293]
 gi|228584593|gb|EEK42720.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus m1293]
          Length = 339

 Score = 34.6 bits (79), Expect = 8.5,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L +     G ++ R   LTG
Sbjct: 24  DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKLFVSIGVRKIR---LTG 76

Query: 93  GEPLLQVDV-PLIQALNKRG--FEIAVETN 119
           GEPLL+ D+  LI  L K     +I + TN
Sbjct: 77  GEPLLRKDLTKLIARLVKIDGLLDIGLTTN 106


>gi|170289703|ref|YP_001736519.1| radical SAM domain-containing protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170173783|gb|ACB06836.1| Radical SAM domain protein [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 354

 Score = 34.6 bits (79), Expect = 8.5,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 16/73 (21%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            +F  FSGCN            +C +C    +      G   + ++LA L+++    G +
Sbjct: 139 TIF--FSGCNF-----------KCIYCQNWDISQFPESGRVVSPEKLAALMDDLRRRGVR 185

Query: 84  EGRYCVLTGGEPL 96
                   GGEP 
Sbjct: 186 NINLV---GGEPT 195


>gi|323439161|gb|EGA96889.1| hypothetical protein SAO11_1999 [Staphylococcus aureus O11]
 gi|323441555|gb|EGA99205.1| hypothetical protein SAO46_2488 [Staphylococcus aureus O46]
          Length = 340

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q       ++D +   ++E         R   +TGGEP+         
Sbjct: 2   RCSHCAVGYT-LQTVDPEPLDMDLIYRRLDEI-----PNLRTMSITGGEPMFSKKSIRNV 55

Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
             PL++  + RG    + +N T+   + +D 
Sbjct: 56  VKPLLKYAHNRGIYTQMNSNLTLPQDRYLDI 86


>gi|302333542|gb|ADL23735.1| putative Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 383

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q       ++D +   ++E         R   +TGGEP+         
Sbjct: 45  RCSHCAVGYT-LQTVDPEPLDMDLIYRRLDEI-----PNLRTMSITGGEPMFSKKSIRNV 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
             PL++  + RG    + +N T+   + +D 
Sbjct: 99  VKPLLKYAHNRGIYTQMNSNLTLPQDRYLDI 129


>gi|298695215|gb|ADI98437.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 381

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q       ++D +   ++E         R   +TGGEP+         
Sbjct: 43  RCSHCAVGYT-LQTVDPEPLDMDLIYRRLDEI-----PNLRTMSITGGEPMFSKKSIRNV 96

Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
             PL++  + RG    + +N T+   + +D 
Sbjct: 97  VKPLLKYAHNRGIYTQMNSNLTLPQDRYLDI 127


>gi|282917222|ref|ZP_06324977.1| hypothetical protein SATG_01796 [Staphylococcus aureus subsp.
           aureus D139]
 gi|283771026|ref|ZP_06343917.1| radical SAM superfamily domain-containing protein [Staphylococcus
           aureus subsp. aureus H19]
 gi|282318849|gb|EFB49204.1| hypothetical protein SATG_01796 [Staphylococcus aureus subsp.
           aureus D139]
 gi|283459620|gb|EFC06711.1| radical SAM superfamily domain-containing protein [Staphylococcus
           aureus subsp. aureus H19]
          Length = 381

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q       ++D +   ++E         R   +TGGEP+         
Sbjct: 43  RCSHCAVGYT-LQTVDPEPLDMDLIYRRLDEI-----PNLRTMSITGGEPMFSKKSIRNV 96

Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
             PL++  + RG    + +N T+   + +D 
Sbjct: 97  VKPLLKYAHNRGIYTQMNSNLTLPQDRYLDI 127


>gi|258422954|ref|ZP_05685853.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257846741|gb|EEV70756.1| conserved hypothetical protein [Staphylococcus aureus A9635]
          Length = 383

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q       ++D +   ++E         R   +TGGEP+         
Sbjct: 45  RCSHCAVGYT-LQTVDPEPLDMDLIYRRLDEI-----PNLRTMSITGGEPMFSKKSIRNV 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
             PL++  + RG    + +N T+   + +D 
Sbjct: 99  VKPLLKYAHNRGIYTQMNSNLTLPQDRYLDI 129


>gi|257451522|ref|ZP_05616821.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R]
 gi|317058099|ref|ZP_07922584.1| predicted protein [Fusobacterium sp. 3_1_5R]
 gi|313683775|gb|EFS20610.1| predicted protein [Fusobacterium sp. 3_1_5R]
          Length = 269

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 18/93 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C   +   +       + + +   +E       +        
Sbjct: 11  CNL-----------KCSYC---YQLKEHCNDKEMSYEIIDTFLERY--NKLEGSHTINFF 54

Query: 92  GGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
           GGEPLL  D    ++  ++K    +++ TNG++
Sbjct: 55  GGEPLLYADKIKYIMDRVDKDRTCLSISTNGSL 87


>gi|312437658|gb|ADQ76729.1| radical SAM superfamily domain protein [Staphylococcus aureus
           subsp. aureus TCH60]
          Length = 394

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q       ++D +   ++E         R   +TGGEP+         
Sbjct: 56  RCSHCAVGYT-LQTVDPEPLDMDLIYRRLDEI-----PNLRTMSITGGEPMFSKKSIRNV 109

Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
             PL++  + RG    + +N T+   + +D 
Sbjct: 110 VKPLLKYAHNRGIYTQMNSNLTLPQDRYLDI 140


>gi|282904508|ref|ZP_06312393.1| radical SAM superfamily domain protein [Staphylococcus aureus
           subsp. aureus C160]
 gi|282919711|ref|ZP_06327443.1| hypothetical protein SASG_02328 [Staphylococcus aureus subsp.
           aureus C427]
 gi|297590071|ref|ZP_06948711.1| radical SAM superfamily domain protein [Staphylococcus aureus
           subsp. aureus MN8]
 gi|282316349|gb|EFB46726.1| hypothetical protein SASG_02328 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282595064|gb|EFC00031.1| radical SAM superfamily domain protein [Staphylococcus aureus
           subsp. aureus C160]
 gi|297577199|gb|EFH95913.1| radical SAM superfamily domain protein [Staphylococcus aureus
           subsp. aureus MN8]
 gi|315193403|gb|EFU23800.1| hypothetical protein CGSSa00_04716 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 381

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q       ++D +   ++E         R   +TGGEP+         
Sbjct: 43  RCSHCAVGYT-LQTVDPEPLDMDLIYRRLDEI-----PNLRTMSITGGEPMFSKKSIRNV 96

Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
             PL++  + RG    + +N T+   + +D 
Sbjct: 97  VKPLLKYAHNRGIYTQMNSNLTLPQDRYLDI 127


>gi|192290582|ref|YP_001991187.1| molybdenum cofactor biosynthesis protein A [Rhodopseudomonas
           palustris TIE-1]
 gi|226707378|sp|B3QCQ7|MOAA_RHOPT RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|192284331|gb|ACF00712.1| molybdenum cofactor biosynthesis protein A [Rhodopseudomonas
           palustris TIE-1]
          Length = 344

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+     +     +++L  L       G ++ R   LTGGEPL+
Sbjct: 33  DRCDFRCVYCMAEDMTFL----PRADLLTLEELDRLCSAFIAKGVRKLR---LTGGEPLV 85

Query: 98  QVD-VPLIQALNKRGF-----EIAVETNGT 121
           + + + L+++L++        E+ + TNG+
Sbjct: 86  RRNMMSLVRSLSRHLKTGALDELTLTTNGS 115


>gi|319427159|gb|ADV55233.1| oxygen-independent coproporphyrinogen III oxidase [Shewanella
           putrefaciens 200]
          Length = 387

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 10/101 (9%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91
            L           +C +CD +  G  G       VD L + + +     +    + + + 
Sbjct: 15  PLSLYIHIPWCVQKCPYCDFNSHGQNGELPQEAYVDALLEDLRQDLHLAQGRQVHTIFIG 74

Query: 92  GGEPLLQVDVPLIQALNKR--------GFEIAVETN-GTIE 123
           GG P L     + + L             EI +E N GT+E
Sbjct: 75  GGTPSLFDAKQIKRILEGANALIPFSDNIEITMEANPGTLE 115


>gi|49187615|ref|YP_030868.1| molybdenum cofactor biosynthesis protein A, N-terminus [Bacillus
           anthracis str. Sterne]
 gi|49181542|gb|AAT56918.1| molybdenum cofactor biosynthesis protein A, N-terminus [Bacillus
           anthracis str. Sterne]
          Length = 252

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  + +     G ++ R   LTG
Sbjct: 35  DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERVAKLFVSIGVRKIR---LTG 87

Query: 93  GEPLLQVDVP-LIQALNKRG--FEIAVETN 119
           GEPLL+ D+  LI  L K     +I + TN
Sbjct: 88  GEPLLRKDLAKLIARLVKIDGLLDIGLTTN 117


>gi|82751530|ref|YP_417271.1| hypothetical protein SAB1809 [Staphylococcus aureus RF122]
 gi|82657061|emb|CAI81498.1| conserved hypothetical protein [Staphylococcus aureus RF122]
          Length = 383

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q       ++D +   ++E         R   +TGGEP+         
Sbjct: 45  RCSHCAVGYT-LQTVDPEPLDMDLIYRRLDEI-----PNLRTMSITGGEPMFSKKSIRNV 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
             PL++  + RG    + +N T+   + +D 
Sbjct: 99  VKPLLKYAHNRGIYTQMNSNLTLPQDRYLDI 129


>gi|49484118|ref|YP_041342.1| hypothetical protein SAR1967 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257426009|ref|ZP_05602431.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428682|ref|ZP_05605077.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431292|ref|ZP_05607668.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257434010|ref|ZP_05610361.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436914|ref|ZP_05612956.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282906280|ref|ZP_06314132.1| radical SAM superfamily domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282909196|ref|ZP_06317012.1| radical SAM superfamily domain-containing protein [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282911502|ref|ZP_06319302.1| radical SAM superfamily domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282914674|ref|ZP_06322459.1| radical SAM superfamily domain protein [Staphylococcus aureus
           subsp. aureus M899]
 gi|282925115|ref|ZP_06332775.1| hypothetical protein SARG_02404 [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958638|ref|ZP_06376084.1| radical SAM superfamily domain-containing protein [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293507751|ref|ZP_06667593.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510769|ref|ZP_06669471.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M809]
 gi|293539308|ref|ZP_06671987.1| radical SAM superfamily domain protein [Staphylococcus aureus
           subsp. aureus M1015]
 gi|295428458|ref|ZP_06821085.1| hypothetical protein SIAG_02227 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|49242247|emb|CAG40954.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271152|gb|EEV03309.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274326|gb|EEV05838.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257277941|gb|EEV08597.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257280936|gb|EEV11080.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283703|gb|EEV13828.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282313073|gb|EFB43471.1| hypothetical protein SARG_02404 [Staphylococcus aureus subsp.
           aureus C101]
 gi|282321388|gb|EFB51714.1| radical SAM superfamily domain protein [Staphylococcus aureus
           subsp. aureus M899]
 gi|282324511|gb|EFB54823.1| radical SAM superfamily domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282326764|gb|EFB57061.1| radical SAM superfamily domain-containing protein [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282330477|gb|EFB59994.1| radical SAM superfamily domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|283789678|gb|EFC28500.1| radical SAM superfamily domain-containing protein [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290919843|gb|EFD96912.1| radical SAM superfamily domain protein [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291094814|gb|EFE25082.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466400|gb|EFF08924.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M809]
 gi|295127440|gb|EFG57079.1| hypothetical protein SIAG_02227 [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 383

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +  +Q       ++D +   ++E         R   +TGGEP+         
Sbjct: 45  RCSHCAVGYT-LQTVDPEPLDMDLIYRRLDEI-----PNLRTMSITGGEPMFSKKSIRNV 98

Query: 101 -VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
             PL++  + RG    + +N T+   + +D 
Sbjct: 99  VKPLLKYAHNRGIYTQMNSNLTLPQDRYLDI 129


>gi|39935047|ref|NP_947323.1| molybdenum cofactor biosynthesis protein A [Rhodopseudomonas
           palustris CGA009]
 gi|123773347|sp|Q3V7S1|MOAA_RHOPA RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|39648898|emb|CAE27419.1| molybdenum biosynthetic protein A [Rhodopseudomonas palustris
           CGA009]
          Length = 344

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 16/90 (17%)

Query: 41  DRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           DR   +C +C   D  F+     +     +++L  L       G ++ R   LTGGEPL+
Sbjct: 33  DRCDFRCVYCMAEDMTFL----PRADLLTLEELDRLCSAFIAKGVRKLR---LTGGEPLV 85

Query: 98  QVD-VPLIQALNKRGF-----EIAVETNGT 121
           + + + L+++L++        E+ + TNG+
Sbjct: 86  RRNMMSLVRSLSRHLKTGALDELTLTTNGS 115


>gi|170077975|ref|YP_001734613.1| molybdenum cofactor biosynthesis protein A [Synechococcus sp. PCC
           7002]
 gi|226707390|sp|B1XLR4|MOAA_SYNP2 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|169885644|gb|ACA99357.1| Molybdenum cofactor biosynthesis protein A [Synechococcus sp. PCC
           7002]
          Length = 329

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
           DR + +C +C  D   +    T   + +  ++  L+E+ +I          LTGGEPLL+
Sbjct: 13  DRCNFRCHYCVPDEASLQYLLT-SEQLSNGEILTLLEQVFIPLGFRKFR--LTGGEPLLR 69

Query: 99  V-DVPLIQA 106
              VPL++A
Sbjct: 70  PQLVPLVRA 78


>gi|149917573|ref|ZP_01906070.1| Coenzyme PQQ synthesis protein E [Plesiocystis pacifica SIR-1]
 gi|149821636|gb|EDM81034.1| Coenzyme PQQ synthesis protein E [Plesiocystis pacifica SIR-1]
          Length = 311

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 19/82 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C +C          +    + + +   + E              T
Sbjct: 13  CNL-----------ACDYC----TITPAMRARALSPEAVVAAMREGRRLDYDR---VAFT 54

Query: 92  GGEPLLQVDVP-LIQALNKRGF 112
           GGEP ++ D+  L++A  K G+
Sbjct: 55  GGEPTIRRDLLGLVRASRKLGY 76


>gi|145351473|ref|XP_001420101.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580334|gb|ABO98394.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 336

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGT-KGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           N       ++ + +C +C     G+  T K      D++  +++     G  + R   LT
Sbjct: 21  NYLRISLTEKCNLRCGYC-MPEDGVDLTAKDELLTADEIGRVVKIFAAAGVDKVR---LT 76

Query: 92  GGEPLLQVDVP 102
           GGEP L+ D+ 
Sbjct: 77  GGEPTLRKDLE 87


>gi|21244125|ref|NP_643707.1| coproporphyrinogen III oxidase [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21109754|gb|AAM38243.1| oxidoreductase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 385

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 31/99 (31%), Gaps = 10/99 (10%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91
            L           +C +CD +    +G       VD L   ++           + V   
Sbjct: 8   PLSLYVHLPWCVRKCPYCDFNSHAAKGALPFEAYVDALIRDLDADLPLVWGRVVHSVFFG 67

Query: 92  GGEPLLQVDVPLIQALNKR--------GFEIAVETN-GT 121
           GG P L     + + L             EI +ETN GT
Sbjct: 68  GGTPSLFPPQAIDRFLQAAAARLRFAPNLEITLETNPGT 106


>gi|331000069|ref|ZP_08323764.1| molybdenum cofactor biosynthesis protein A [Parasutterella
           excrementihominis YIT 11859]
 gi|329572953|gb|EGG54573.1| molybdenum cofactor biosynthesis protein A [Parasutterella
           excrementihominis YIT 11859]
          Length = 313

 Score = 34.6 bits (79), Expect = 8.7,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 66  NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNK------RGFEIAVET 118
            V    ++I    I          LTGGEPLL+  +  LI+ L+K      +  ++AV T
Sbjct: 17  EVLSFEEIIRLGKIFAANGIEKIRLTGGEPLLRKGIEFLIEELSKLKTWNGKPLDVAVTT 76

Query: 119 NG 120
           NG
Sbjct: 77  NG 78


>gi|294055876|ref|YP_003549534.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Coraliomargarita akajimensis DSM 45221]
 gi|293615209|gb|ADE55364.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Coraliomargarita akajimensis DSM 45221]
          Length = 173

 Score = 34.6 bits (79), Expect = 8.7,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 20/84 (23%)

Query: 20  AGRVA-VFCRFSGCNLWSGREQDRLSAQCRFCDTDF--VGIQGTKGGRYNVDQLADLIEE 76
            G    +F   SGC             +C  C   +         G R+  + L  +I +
Sbjct: 15  IGTRCTLFV--SGC-----------EHRCPGC---YNASTWPADSGHRFTDELLEQIIHD 58

Query: 77  QWITGEKEGRYCVLTGGEPLLQVD 100
              T     R   LTGG+PLL  +
Sbjct: 59  LQDTRILR-RGLSLTGGDPLLYAN 81


>gi|258405854|ref|YP_003198596.1| molybdenum cofactor biosynthesis protein A [Desulfohalobium
           retbaense DSM 5692]
 gi|257798081|gb|ACV69018.1| molybdenum cofactor biosynthesis protein A [Desulfohalobium
           retbaense DSM 5692]
          Length = 329

 Score = 34.6 bits (79), Expect = 8.7,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 14/89 (15%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR + +C +C                 +++  LI      G  + R   LTGGEP ++ D
Sbjct: 18  DRCNLRCFYCRNKEGLQFIPHHKILRYEEMLRLIAAVDSMGVSKVR---LTGGEPFVRRD 74

Query: 101 VPLIQALNKR-------GFEIAVETNGTI 122
              I+ L +         F +   TNGT 
Sbjct: 75  --FIEFLEQAAERFPQTDFRVT--TNGTY 99


>gi|167911569|ref|ZP_02498660.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 112]
          Length = 336

 Score = 34.6 bits (79), Expect = 8.7,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 21/107 (19%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           GR   + R S          DR   +C +C   D  F+        R +V  L  L    
Sbjct: 17  GRAVTYVRLS--------VTDRCDFRCVYCMTQDMRFL-------PRSDVLTLDALAALA 61

Query: 78  WITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKR-GF-EIAVETNGT 121
                   R   LTGGEPL++     L++ + +  G  E+A+ TNG 
Sbjct: 62  RACVALGVRRIRLTGGEPLVRPGLTTLVERIARLPGLDELALTTNGA 108


>gi|149917134|ref|ZP_01905634.1| Radical SAM [Plesiocystis pacifica SIR-1]
 gi|149822050|gb|EDM81443.1| Radical SAM [Plesiocystis pacifica SIR-1]
          Length = 381

 Score = 34.6 bits (79), Expect = 8.7,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 46/138 (33%), Gaps = 33/138 (23%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C  C T     +  +    +V ++AD++ +       +     +T
Sbjct: 50  CNL-----------RCSMCRT----WEDPRRDELSVPEIADIMRQLPRLTWLD-----VT 89

Query: 92  GGEPLLQVD---VPLIQALNKRGFEI-AVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
           GGEP L+ D   + L  A   +   +    TNG         W        C   I    
Sbjct: 90  GGEPFLRKDAKALMLTIARTAQALTVLHFPTNG---------WFTKRVVETCAELIAERP 140

Query: 148 ELKLVFPQVNVSPENYIG 165
           E++L+       PE    
Sbjct: 141 EIQLIVTVSVDGPEAVHD 158


>gi|323464035|gb|ADX76188.1| radical SAM domain protein [Staphylococcus pseudintermedius ED99]
          Length = 379

 Score = 34.6 bits (79), Expect = 8.8,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 12/91 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99
           +C  C   +  +Q        +  +   ++E         R   +TGGEP+       +V
Sbjct: 44  RCSHCAVGYT-LQTKDPDILPMSLILQRLDEI-----PTLRTISITGGEPMFSKKSIREV 97

Query: 100 DVPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
             PL++   +RG  + + +N T+   + +D 
Sbjct: 98  VKPLLKYAYQRGIYVQLNSNLTLPLDRYLDI 128


>gi|319892917|ref|YP_004149792.1| hypothetical protein SPSINT_1628 [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162613|gb|ADV06156.1| Hypothetical protein SPSINT_1628 [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 379

 Score = 34.6 bits (79), Expect = 8.8,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 12/91 (13%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL------QV 99
           +C  C   +  +Q        +  +   ++E         R   +TGGEP+       +V
Sbjct: 44  RCSHCAVGYT-LQTKDPDILPMSLILQRLDEI-----PTLRTISITGGEPMFSKKSIREV 97

Query: 100 DVPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
             PL++   +RG  + + +N T+   + +D 
Sbjct: 98  VKPLLKYAYQRGIYVQLNSNLTLPLDRYLDI 128


>gi|305663800|ref|YP_003860088.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378369|gb|ADM28208.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
          Length = 378

 Score = 34.6 bits (79), Expect = 8.8,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 28/116 (24%)

Query: 15  GE-GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQL 70
           GE G +   +AVF  F+GCNL            C FC   D   +        RY +D+ 
Sbjct: 132 GEYGYYN--LAVF--FAGCNL-----------DCVFCQNWDHKDIITSWDLRKRYTIDR- 175

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI---QALNKRG---FEIAVETNG 120
            + + E+ +  ++    C   GG+P   +   L    + +  +G     I  ETNG
Sbjct: 176 -EYLIEKALKNDRITCICFF-GGDPGPHIIDALYISRKIVENKGSSIKRICWETNG 229


>gi|91203309|emb|CAJ72948.1| similar to heme d1 biosynthesis protein NirJ [Candidatus Kuenenia
           stuttgartiensis]
          Length = 629

 Score = 34.6 bits (79), Expect = 8.8,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 14/90 (15%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           QC  C  D   +        +  +   LI++  +         +LT
Sbjct: 16  CNL-----------QCDHCYLDANALTKKSPYELDTKEGFKLIDQ--MAELNPNLLLILT 62

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
           GGEPLL+ D+  L    +K+G  + + TNG
Sbjct: 63  GGEPLLRNDIYDLSHYASKKGMMVVLGTNG 92


>gi|317493548|ref|ZP_07951969.1| KamA family protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918491|gb|EFV39829.1| KamA family protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 344

 Score = 34.6 bits (79), Expect = 8.9,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
           +  CR+C       Q  +G + N  Q  D I +Q    E      + +GG+PL+  D  L
Sbjct: 123 AVNCRYCFRRHFPYQDNQGNKANWRQALDYIRQQPELDE-----IIFSGGDPLMAKDHEL 177

Query: 104 IQALNK 109
              L++
Sbjct: 178 AWLLDE 183


>gi|258654860|ref|YP_003204016.1| molybdenum cofactor biosynthesis protein A [Nakamurella
           multipartita DSM 44233]
 gi|258558085|gb|ACV81027.1| molybdenum cofactor biosynthesis protein A [Nakamurella
           multipartita DSM 44233]
          Length = 356

 Score = 34.6 bits (79), Expect = 8.9,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 13/87 (14%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY----CVLTGGEPL 96
           DR + +C +C      +          D+L    E   +               TGGEPL
Sbjct: 47  DRCNLRCTYC------MPAEGLNWQPADELLSDDELVRVIALAVEHLGIEEIRFTGGEPL 100

Query: 97  LQVDVP-LIQALNKR--GFEIAVETNG 120
           L+  +P LI  +       EI++ TNG
Sbjct: 101 LRRGLPQLIARVADLRPRPEISLTTNG 127


>gi|296169635|ref|ZP_06851253.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295895632|gb|EFG75328.1| molybdopterin cofactor biosynthesis protein A [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 359

 Score = 34.6 bits (79), Expect = 9.0,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           DR + +C +C     G+    G +    D+L  L+                TGGEPLL  
Sbjct: 46  DRCNLRCSYC-MPAEGLDWLPGEQLLRPDELTRLM--HIAVTRLGITSVRFTGGEPLLAR 102

Query: 100 DVP----LIQALNKRGFEIAVETNG 120
            +      +  L  R  EI++ TNG
Sbjct: 103 HLEEVVAAVAGLRPRP-EISLTTNG 126


>gi|265762579|ref|ZP_06091147.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263255187|gb|EEZ26533.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 375

 Score = 34.6 bits (79), Expect = 9.0,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 11/93 (11%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
                   + +C +C   ++   G     T   +Y+ DQ+   +  + + G     +C  
Sbjct: 10  CYVPVTACTLRCHYC---YITQHGLFANKTPRFKYSPDQVRKALSIERLGGICLINFCAA 66

Query: 91  TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
             GE LL  D +  I+A+ + G  + + TN T+
Sbjct: 67  --GETLLHKDILSYIRAILEEGHYVMIVTNATV 97


>gi|288932339|ref|YP_003436399.1| radical SAM protein [Ferroglobus placidus DSM 10642]
 gi|288894587|gb|ADC66124.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642]
          Length = 331

 Score = 34.6 bits (79), Expect = 9.0,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 47  CRFCDT--DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102
           C +C    +  G          V  L D+ EE      +      +TGGEPLL++D  + 
Sbjct: 38  CYYCPISEEKKGKDVVYANERPVRSLEDIAEEINAMSAEG---IAITGGEPLLKLDYVLE 94

Query: 103 LIQALNKRGFEIAVETN 119
           +I+A +     I + T+
Sbjct: 95  VIEAFDD--LHIHLYTS 109


>gi|253576912|ref|ZP_04854236.1| radical SAM domain-containing protein [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251843643|gb|EES71667.1| radical SAM domain-containing protein [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 420

 Score = 34.6 bits (79), Expect = 9.0,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 23/101 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN--VDQLADLIEEQWITGEKEGRYCV 89
           CNL            C +C   +   +G  G   N     + +     ++   +      
Sbjct: 24  CNL-----------ACDYC--YYSTCKGKPGPNINRIDSSVLETFIRNYMKVSRGAVVFA 70

Query: 90  LTGGEPLLQVDVPL-----IQALNKRGFEI---AVETNGTI 122
             GGEPLL           +QAL+     I   +++TNGT+
Sbjct: 71  WQGGEPLLAGHAFFEQVVRLQALHAPPRTIISNSLQTNGTL 111


>gi|213963661|ref|ZP_03391912.1| probable molybdopterin cofactor synthesis protein A [Capnocytophaga
           sputigena Capno]
 gi|213953656|gb|EEB64987.1| probable molybdopterin cofactor synthesis protein A [Capnocytophaga
           sputigena Capno]
          Length = 330

 Score = 34.6 bits (79), Expect = 9.0,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 41  DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL- 97
           D  + +C +C  D  F     +K      D++  +   +  T +       +TGGEPL+ 
Sbjct: 22  DSCNFRCLYCMPDEPFSSSSSSKLMS--SDEIFGI--SKIFTEQFGISKIRITGGEPLVR 77

Query: 98  QVDVPLIQALNKRGFEIAVETNGTI 122
                +I+ L      + V TNG +
Sbjct: 78  HDFAEIIEKLATLQVSLGVTTNGVL 102


>gi|188990608|ref|YP_001902618.1| pyrroloquinoline quinone biosynthesis protein PqqE [Xanthomonas
           campestris pv. campestris str. B100]
 gi|226704998|sp|B0RQ25|PQQE_XANCB RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|167732368|emb|CAP50560.1| Coenzyme PQQ synthesis protein E [Xanthomonas campestris pv.
           campestris]
          Length = 376

 Score = 34.6 bits (79), Expect = 9.0,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R    C +C               +      L+E+    G  +  +   +GGEP+L+ D+
Sbjct: 17  RCPLACPYCSNPIAL--AALREEMDTAGWRSLLEQAAEMGVLQAHF---SGGEPMLRKDL 71

Query: 102 P-LIQALNKRGFEIAVETNG 120
           P L+      G    + T+G
Sbjct: 72  PELVAHARALGLYSNLITSG 91


>gi|161338490|emb|CAO03077.1| 1-methyl alkyl succinate synthase activase [Azoarcus sp. HxN1]
          Length = 325

 Score = 34.6 bits (79), Expect = 9.0,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119
           G   +VD++  ++E+  +  +  G    L+GG+P    D    L++   +R     ++TN
Sbjct: 115 GRTMSVDEIMTIVEQDMLFYKNSGGGFTLSGGDPTAFPDFSETLLREAKRRELHTCMDTN 174

Query: 120 GTIEPP 125
           G     
Sbjct: 175 GHCAWS 180


>gi|159042455|ref|YP_001541707.1| radical SAM domain-containing protein [Caldivirga maquilingensis
           IC-167]
 gi|157921290|gb|ABW02717.1| Radical SAM domain protein [Caldivirga maquilingensis IC-167]
          Length = 382

 Score = 34.6 bits (79), Expect = 9.0,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 44/122 (36%), Gaps = 21/122 (17%)

Query: 33  NLWSGREQDRL-SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
            L    E  +     CR C      I     G  + D+   LIE+    G K     +LT
Sbjct: 9   PLLVFWETTKACPLSCRHC--RANAILKPLPGELSTDEGKRLIEQLPEFG-KPTPVLILT 65

Query: 92  GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
           GG+PL++ D+  LI         +AV       P        VS K   D  I    EL+
Sbjct: 66  GGDPLMREDIFELIDYAKSLNVPVAV------SP-------TVSEKLLSDNVI---DELR 109

Query: 151 LV 152
            V
Sbjct: 110 RV 111


>gi|7649371|emb|CAB89080.1| alternative III protein [Acinetobacter calcoaceticus]
          Length = 331

 Score = 34.6 bits (79), Expect = 9.0,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 10/114 (8%)

Query: 90  LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140
            +GGEPL+ Q    L+   +++GF   + T+G              G+D I VS +A   
Sbjct: 8   FSGGEPLVRQDLEQLVAHAHQQGFYTNLITSGMGLTEQRIADLKQAGLDHIQVSFQASDP 67

Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
           +        K  F Q          +D+    L  +      +     I  C +
Sbjct: 68  VVNDALAGSKHAFEQKYEMCRLVKKYDYP-MVLNFVIHRHNIDQIEQIIELCLE 120


>gi|229032383|ref|ZP_04188354.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1271]
 gi|228728946|gb|EEL79951.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH1271]
          Length = 339

 Score = 34.6 bits (79), Expect = 9.1,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 16/76 (21%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L +     G ++ R   LTG
Sbjct: 24  DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLAKLFVSIGVRKIR---LTG 76

Query: 93  GEPLLQVDV-PLIQAL 107
           GEPLL+ D+  LI  L
Sbjct: 77  GEPLLRKDLTKLIARL 92


>gi|198242498|ref|YP_002217894.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197937014|gb|ACH74347.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
          Length = 431

 Score = 34.6 bits (79), Expect = 9.1,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 12/102 (11%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GC++ +       +  C +C   + + +  +  K  R + + L   I +       +  
Sbjct: 4   AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63

Query: 87  YCVLTGGEPLLQVDVPLIQA---LNKR---GFEI--AVETNG 120
                GGEP + + +P  +    L ++   G +I  A++TNG
Sbjct: 64  DFAWQGGEPTM-MGLPFFRRVVTLCEKYGDGRKITHALQTNG 104


>gi|168467617|ref|ZP_02701454.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195629974|gb|EDX48634.1| chondroitin sulfate/heparin utilization regulation protein
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 431

 Score = 34.6 bits (79), Expect = 9.1,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 12/102 (11%)

Query: 30  SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           +GC++ +       +  C +C   + + +  +  K  R + + L   I +       +  
Sbjct: 4   AGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRI 63

Query: 87  YCVLTGGEPLLQVDVPLIQA---LNKR---GFEI--AVETNG 120
                GGEP + + +P  +    L ++   G +I  A++TNG
Sbjct: 64  DFAWQGGEPTM-MGLPFFRRVVTLCEKYGDGRKITHALQTNG 104


>gi|119472284|ref|ZP_01614444.1| molybdenum cofactor biosynthesis protein A [Alteromonadales
           bacterium TW-7]
 gi|119445006|gb|EAW26302.1| molybdenum cofactor biosynthesis protein A [Alteromonadales
           bacterium TW-7]
          Length = 323

 Score = 34.6 bits (79), Expect = 9.1,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 18/92 (19%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CN                CDT    +      +  ++ L +   +         +   +T
Sbjct: 21  CNFSCTYCLPNGYQ----CDTPRNFL-----NKNEINTLVNAFAQLG------TKKVRIT 65

Query: 92  GGEPLLQVDV-PLIQALNK-RGFE-IAVETNG 120
           GGEP L+ DV  +I+      G E +A+ TNG
Sbjct: 66  GGEPCLRSDVTDIIKQCKNTPGIEKVAITTNG 97


>gi|114328590|ref|YP_745747.1| pyrroloquinoline quinone biosynthesis protein PqqE [Granulibacter
           bethesdensis CGDNIH1]
 gi|122326456|sp|Q0BQS8|PQQE_GRABC RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein E
 gi|114316764|gb|ABI62824.1| coenzyme PQQ synthesis protein E [Granulibacter bethesdensis
           CGDNIH1]
          Length = 374

 Score = 34.6 bits (79), Expect = 9.1,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 14/102 (13%)

Query: 42  RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
           R   QC +C       +   G     ++   +++E    G  +  +   +GGEP+++ D+
Sbjct: 17  RCPLQCPYCSNPLELERA--GIELKTEEWLRIMDEAAELGVLQMHF---SGGEPMVRKDL 71

Query: 102 P-LIQALNKRGFEIAVETNGTI--------EPPQGIDWICVS 134
           P LI    +R     + T+G +            GID I +S
Sbjct: 72  PELIARAVERQMYTNIITSGVLLDEAMMERLMKAGIDHIQLS 113


>gi|15668990|ref|NP_247794.1| pyruvate formate-lyase activating enzyme [Methanocaldococcus
           jannaschii DSM 2661]
 gi|3915955|sp|Q58214|Y804_METJA RecName: Full=Uncharacterized protein MJ0804
 gi|2826326|gb|AAB98804.1| pyruvate formate-lyase activating enzyme (act) [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 286

 Score = 34.6 bits (79), Expect = 9.1,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 29/96 (30%)

Query: 29  FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
              CNL            C +C   +  ++  K G Y   + A+ +              
Sbjct: 47  TQKCNL-----------NCIYC---YSRLKTVKRGIYGNLEEAETVTISQY--------- 83

Query: 89  VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
               GEPLL ++     I+     G  + ++TNGT+
Sbjct: 84  ----GEPLLDLEGVKKAIEFCKDLGLRVDLQTNGTL 115


>gi|67923596|ref|ZP_00517068.1| Radical SAM [Crocosphaera watsonii WH 8501]
 gi|67854566|gb|EAM49853.1| Radical SAM [Crocosphaera watsonii WH 8501]
          Length = 248

 Score = 34.6 bits (79), Expect = 9.1,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 35/135 (25%)

Query: 27  CRF----SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
            RF     GC L           +C +C   D   V      G   +VD+L   IE+   
Sbjct: 25  IRFIVFTKGCPL-----------RCLYCHNADCRHV----ENGKLVSVDELISEIEKYQS 69

Query: 80  TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG------TIEPPQGIDWI 131
             +  G    ++GGEPL+Q +    + +  ++ G   A++T+G           +  D +
Sbjct: 70  YFKFSGGGVTVSGGEPLMQPEFVKAIFEECHRLGIHTALDTSGYVNVNIAKPVLEYADLV 129

Query: 132 -----CVSPKAGCDL 141
                   PK    +
Sbjct: 130 LLDIKSFDPKVYKKV 144


>gi|189219977|ref|YP_001940617.1| Radical SAM superfamily enzyme [Methylacidiphilum infernorum V4]
 gi|189186835|gb|ACD84020.1| Radical SAM superfamily enzyme [Methylacidiphilum infernorum V4]
          Length = 334

 Score = 34.6 bits (79), Expect = 9.2,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 75  EEQWITGEKE-GRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
           E+ W   E+       + GGEPL+  ++  ++  L +R   I + TN  I   + ID   
Sbjct: 61  EQCWKAAEECGAPIVSIAGGEPLVHKEIDRIVAGLIERKKYIYLCTN-AILLRKRIDLFK 119

Query: 133 VSPKAGCDLKIKGGQE 148
            S      + + G +E
Sbjct: 120 PSKYLTFSIHLDGLKE 135


>gi|167919579|ref|ZP_02506670.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei BCC215]
          Length = 332

 Score = 34.6 bits (79), Expect = 9.2,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 21/107 (19%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           GR   + R S          DR   +C +C   D  F+        R +V  L  L    
Sbjct: 13  GRAVTYVRLS--------VTDRCDFRCVYCMTQDMRFL-------PRSDVLTLDALAALA 57

Query: 78  WITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKR-GF-EIAVETNGT 121
                   R   LTGGEPL++     L++ + +  G  E+A+ TNG 
Sbjct: 58  RACVALGVRRIRLTGGEPLVRPGLTTLVERIARLPGLDELALTTNGA 104


>gi|124005079|ref|ZP_01689921.1| molybdenum cofactor biosynthesis protein A [Microscilla marina ATCC
           23134]
 gi|123989331|gb|EAY28892.1| molybdenum cofactor biosynthesis protein A [Microscilla marina ATCC
           23134]
          Length = 334

 Score = 34.6 bits (79), Expect = 9.2,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 23/171 (13%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           N       DR + +C +C     GI+   K    + +++  L+      G  + R   LT
Sbjct: 16  NYLRLAVTDRCNLRCFYC-MPEEGIKYLPKKHLLSYEEMERLVRLLASMGVNKIR---LT 71

Query: 92  GGEPLLQVDV-PLIQALNK-RGF-EIAVETNGTI-------EPPQGIDWICVS----PKA 137
           GGEP L+ D+   +Q +    G  E+ + TNG +           GI  + +S     K 
Sbjct: 72  GGEPFLRKDLINFMQTIRNIEGINELNITTNGVLTEQYIPAMVKMGISSVNLSLDTLDKE 131

Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
              LKI    E   V   ++   E+ I     + ++  M G   E+   LA
Sbjct: 132 RF-LKITRRNEFDKVMRCLDALIESGIK---TKINMVVMAGQNTEDIVPLA 178


>gi|118592266|ref|ZP_01549659.1| nitrite reductase heme biosynthesis J protein [Stappia aggregata
           IAM 12614]
 gi|118435238|gb|EAV41886.1| nitrite reductase heme biosynthesis J protein [Stappia aggregata
           IAM 12614]
          Length = 406

 Score = 34.6 bits (79), Expect = 9.2,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 20/107 (18%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
            +       R + +CR C T    +     G    DQ    +E+    G       +L+G
Sbjct: 28  PVVIWNLTRRCNLKCRHCYTVSADVDFP--GELTHDQAMATLEDL---GRFGIPALILSG 82

Query: 93  GEPLLQVDV--------PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
           GEPL + D+         L++ L       A+ TNGT    +  D +
Sbjct: 83  GEPLDRKDLFEIAGRARSLVRML-------ALSTNGTRLHGETADKV 122


>gi|254246046|ref|ZP_04939367.1| Coproporphyrinogen III oxidase [Burkholderia cenocepacia PC184]
 gi|124870822|gb|EAY62538.1| Coproporphyrinogen III oxidase [Burkholderia cenocepacia PC184]
          Length = 404

 Score = 34.6 bits (79), Expect = 9.2,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 32/106 (30%), Gaps = 17/106 (16%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87
            L           +C +CD         KG R+      D +             ++   
Sbjct: 28  PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPEADYLDALRADLEQALPLVWGRQVHT 84

Query: 88  CVLTGGEPLLQVDVPL------IQAL--NKRGFEIAVETN-GTIEP 124
             + GG P L     L      ++AL       EI +E N GT E 
Sbjct: 85  VFIGGGTPSLLSAAGLDRMLSDVRALLPLDADAEITLEANPGTFEA 130


>gi|107022074|ref|YP_620401.1| coproporphyrinogen III oxidase [Burkholderia cenocepacia AU 1054]
 gi|116689018|ref|YP_834641.1| coproporphyrinogen III oxidase [Burkholderia cenocepacia HI2424]
 gi|170732307|ref|YP_001764254.1| coproporphyrinogen III oxidase [Burkholderia cenocepacia MC0-3]
 gi|105892263|gb|ABF75428.1| Putative oxygen-independent coproporphyrinogen III oxidase
           [Burkholderia cenocepacia AU 1054]
 gi|116647107|gb|ABK07748.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Burkholderia cenocepacia HI2424]
 gi|169815549|gb|ACA90132.1| oxygen-independent coproporphyrinogen III oxidase [Burkholderia
           cenocepacia MC0-3]
          Length = 404

 Score = 34.6 bits (79), Expect = 9.2,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 32/106 (30%), Gaps = 17/106 (16%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-----EKEGRY 87
            L           +C +CD         KG R+      D +             ++   
Sbjct: 28  PLALYVHFPWCVRKCPYCD---FNSHEWKGERFPEADYLDALRADLEQALPLVWGRQVHT 84

Query: 88  CVLTGGEPLLQVDVPL------IQAL--NKRGFEIAVETN-GTIEP 124
             + GG P L     L      ++AL       EI +E N GT E 
Sbjct: 85  VFIGGGTPSLLSAAGLDRMLSDVRALLPLDADAEITLEANPGTFEA 130


>gi|167894937|ref|ZP_02482339.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 7894]
          Length = 338

 Score = 34.6 bits (79), Expect = 9.2,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 21/107 (19%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           GR   + R S          DR   +C +C   D  F+        R +V  L  L    
Sbjct: 19  GRAVTYVRLS--------VTDRCDFRCVYCMTQDMRFL-------PRSDVLTLDALAALA 63

Query: 78  WITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKR-GF-EIAVETNGT 121
                   R   LTGGEPL++     L++ + +  G  E+A+ TNG 
Sbjct: 64  RACVALGVRRIRLTGGEPLVRPGLTTLVERIARLPGLDELALTTNGA 110


>gi|95929593|ref|ZP_01312335.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
 gi|95134290|gb|EAT15947.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
          Length = 476

 Score = 34.6 bits (79), Expect = 9.2,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 8/101 (7%)

Query: 36  SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
                 R +  C +C T    I              D +      G +       +GGEP
Sbjct: 80  CLFINGRCNCDCFYCPTSQQEIGQPTTNSIEFRHAEDYVLYLQRFGFRGA---SFSGGEP 136

Query: 96  LLQVDVPL--IQALNKR---GFEIAVETNGTIEPPQGIDWI 131
           LL  D  L  ++ +       F   + TNG++   Q +D +
Sbjct: 137 LLTFDRTLHFLKTIKAHMPSDFHTWLYTNGSLLTDQMVDQL 177


>gi|326204016|ref|ZP_08193877.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325985783|gb|EGD46618.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 456

 Score = 34.6 bits (79), Expect = 9.3,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 16/90 (17%)

Query: 23  VAVFCRFSGCNLWSGREQDRLS-----------AQCRFCDTDFVGIQGTKGGRYNVDQLA 71
            A+F R    +++     +               +CR+C  D    +  +      +++ 
Sbjct: 95  PAIFLRTED-HVFDPYNLEIPKTISFHVTSTCNKECRYCYLD-AKRENLEKDALTFEEVV 152

Query: 72  DLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
            +I+E    G  +  Y   TGGEP L+ D+
Sbjct: 153 RMIDEAAAIGVYKILY---TGGEPFLRKDL 179


>gi|257063092|ref|YP_003142764.1| hypothetical protein Shel_03520 [Slackia heliotrinireducens DSM
          20476]
 gi|256790745|gb|ACV21415.1| hypothetical protein Shel_03520 [Slackia heliotrinireducens DSM
          20476]
          Length = 212

 Score = 34.6 bits (79), Expect = 9.3,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 20/73 (27%)

Query: 30 SGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
           GC           S  C  C   DT       +   ++  D +   I E+ + G     
Sbjct: 26 QGC-----------SIACPGCISKDTWDKQGGTSADEQWLSDLIIKTIREENLDG----- 69

Query: 87 YCVLTGGEPLLQV 99
            V+TGGEP  Q 
Sbjct: 70 -IVVTGGEPTEQA 81


>gi|205829721|sp|Q2IHD1|Y4229_ANADE RecName: Full=Probable RNA methyltransferase Adeh_4229
          Length = 338

 Score = 34.6 bits (79), Expect = 9.3,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 59/186 (31%), Gaps = 22/186 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           ++     Q   +  C FC T  +G+  +      V QL  +        E+     V  G
Sbjct: 97  HVVCLSSQAGCALGCAFCATAKLGLDRSLRSWEMVSQLLAV----RADSERPITGVVFMG 152

Query: 93  -GEPLLQVDVPLIQ--ALNK-RG-----FEIAVETNGTIE------PPQGIDWICVSPKA 137
            GEP L  D  L    AL    G       I++ T G +              +C+S  A
Sbjct: 153 QGEPFLNYDEVLAAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGHKFRLCISLNA 212

Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-RFSLQP--MDGPFLEENTNLAISYCFQ 194
               K +    ++  FP   +            R +L+   + G  + E    A+     
Sbjct: 213 AMPWKRRALMPVEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLA 272

Query: 195 NPKWRL 200
               RL
Sbjct: 273 GIPVRL 278


>gi|163787535|ref|ZP_02181982.1| hypothetical protein FBALC1_03312 [Flavobacteriales bacterium
           ALC-1]
 gi|159877423|gb|EDP71480.1| hypothetical protein FBALC1_03312 [Flavobacteriales bacterium
           ALC-1]
          Length = 405

 Score = 34.6 bits (79), Expect = 9.3,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 43  LSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           ++ +C   CD  +      K  +   + L ++I +    G  +     LTGGEPL++ 
Sbjct: 134 VTKKCPLQCDHCYAWDILNKKEQLRPEDLKNIIGKLQKMGTAQIH---LTGGEPLIKP 188


>gi|154503579|ref|ZP_02040639.1| hypothetical protein RUMGNA_01403 [Ruminococcus gnavus ATCC 29149]
 gi|260589912|ref|ZP_05855825.1| putative elongator protein 3/MiaB/NifB [Blautia hansenii DSM 20583]
 gi|153795679|gb|EDN78099.1| hypothetical protein RUMGNA_01403 [Ruminococcus gnavus ATCC 29149]
 gi|260539719|gb|EEX20288.1| putative elongator protein 3/MiaB/NifB [Blautia hansenii DSM 20583]
          Length = 426

 Score = 34.6 bits (79), Expect = 9.3,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 12/111 (10%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N        + +  C FC       +      + ++ + + +       + +    +LTG
Sbjct: 76  NTVYLMVTRKCNMNCDFC-AISANDKLRPEKEFKLEDIQNKV--IPFFQKNKPHKMILTG 132

Query: 93  GEPLLQVDVPLIQALNKRG--FEIAVETNG-------TIEPPQGIDWICVS 134
           GEPL++  +  I    + G    I +++NG       T +    ID I  S
Sbjct: 133 GEPLIKDQIVEIAKALRNGLTCPITLQSNGLAITRELTEQLKGYIDEIDFS 183


>gi|86160645|ref|YP_467430.1| radical SAM family protein [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85777156|gb|ABC83993.1| Radical SAM [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 309

 Score = 34.6 bits (79), Expect = 9.3,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 59/186 (31%), Gaps = 22/186 (11%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           ++     Q   +  C FC T  +G+  +      V QL  +        E+     V  G
Sbjct: 68  HVVCLSSQAGCALGCAFCATAKLGLDRSLRSWEMVSQLLAV----RADSERPITGVVFMG 123

Query: 93  -GEPLLQVDVPLIQ--ALNK-RG-----FEIAVETNGTIE------PPQGIDWICVSPKA 137
            GEP L  D  L    AL    G       I++ T G +              +C+S  A
Sbjct: 124 QGEPFLNYDEVLAAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGHKFRLCISLNA 183

Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-RFSLQP--MDGPFLEENTNLAISYCFQ 194
               K +    ++  FP   +            R +L+   + G  + E    A+     
Sbjct: 184 AMPWKRRALMPVEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLA 243

Query: 195 NPKWRL 200
               RL
Sbjct: 244 GIPVRL 249


>gi|114563155|ref|YP_750668.1| radical SAM domain-containing protein [Shewanella frigidimarina
           NCIMB 400]
 gi|114334448|gb|ABI71830.1| Radical SAM domain protein [Shewanella frigidimarina NCIMB 400]
          Length = 320

 Score = 34.6 bits (79), Expect = 9.3,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 17/92 (18%)

Query: 42  RLSAQCRFCDTDFVG---IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
             S +C  CDT           K   Y V+Q+ ++I               L+GGE  LQ
Sbjct: 103 WDSTKCSQCDTCLAVCPRQSTPKTSHYTVEQMLEVI----YGQRHFINGITLSGGEASLQ 158

Query: 99  VDVPLIQAL--------NKRGFEIAVETNGTI 122
             +P I  L        +       ++TNG++
Sbjct: 159 --LPFIIELFSAIKSSEHLSHLSCMLDTNGSL 188


>gi|302348952|ref|YP_003816590.1| predicted Fe-S osidoreductase [Acidilobus saccharovorans 345-15]
 gi|302329364|gb|ADL19559.1| predicted Fe-S osidoreductase [Acidilobus saccharovorans 345-15]
          Length = 591

 Score = 34.6 bits (79), Expect = 9.4,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 34  LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY--CVLT 91
           L +    +R +  C +C          K G Y  +   +L+  Q    +K+G      +T
Sbjct: 145 LVNLVVTNRCNLSCYYC-----FFYAEKAG-YVYEPSIELLRYQVRQIKKQGFTMAIQIT 198

Query: 92  GGEPLLQVDVP-LIQALNKRGFE-IAVETNG 120
           GGEP L+ D+P +I+ L + G   I + T G
Sbjct: 199 GGEPTLREDLPEIIKMLREEGVRHIQLNTAG 229


>gi|300854370|ref|YP_003779354.1| pyruvate formate-lyase activating enzyme [Clostridium ljungdahlii
           DSM 13528]
 gi|300434485|gb|ADK14252.1| pyruvate formate-lyase activating enzyme [Clostridium ljungdahlii
           DSM 13528]
          Length = 310

 Score = 34.6 bits (79), Expect = 9.4,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 54  FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRG 111
           + G     G    V +L   +++  I   + G    L+GGE   Q +    L++   + G
Sbjct: 102 YAGALNLAGNTRTVKELLLELKKDNIYYRRSGGGITLSGGEVTAQPEFAEELLKGCKQNG 161

Query: 112 FEIAVET 118
           +  A+ET
Sbjct: 162 WHTAIET 168


>gi|312113463|ref|YP_004011059.1| coenzyme PQQ biosynthesis protein E [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218592|gb|ADP69960.1| coenzyme PQQ biosynthesis protein E [Rhodomicrobium vannielii ATCC
           17100]
          Length = 375

 Score = 34.6 bits (79), Expect = 9.4,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 24/107 (22%)

Query: 42  RLSAQCRFCDTDFVGIQG-----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
           R   QC +C      ++      T+G R   +Q ADL                L+GGEP 
Sbjct: 31  RCPLQCPYCSNPLTLLKAADELDTRGWRSAFEQAADL----------GVLQVHLSGGEPT 80

Query: 97  LQVDV-PLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVS 134
           L+ D+   + AL+ RG    + T G              G+D + +S
Sbjct: 81  LRADLDDFVAALSARGVYTNLITAGVTQTRERVARLADCGLDHVQLS 127


>gi|138894071|ref|YP_001124524.1| thioredoxin-like oxidoreductase [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250260|ref|ZP_03148953.1| YfkB-like domain protein [Geobacillus sp. G11MC16]
 gi|134265584|gb|ABO65779.1| Thioredoxin-like oxidoreductase [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210149|gb|EDY04915.1| YfkB-like domain protein [Geobacillus sp. G11MC16]
          Length = 374

 Score = 34.6 bits (79), Expect = 9.4,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 46  QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----- 100
           +C  C   +            +D L   +EE         R   +TGGEP+L +      
Sbjct: 44  RCEHCAVGYTLATKDPDA-LPLDLLIRRLEEI-----PHLRSLSITGGEPMLSLTSVERY 97

Query: 101 -VPLIQALNKRGFEIAVETNGTIEP 124
            VPL++  ++RG    + +N T++ 
Sbjct: 98  VVPLLRYAHERGVRTQLNSNLTLDL 122


>gi|14521206|ref|NP_126681.1| heme biosynthesis protein related [Pyrococcus abyssi GE5]
 gi|5458424|emb|CAB49912.1| Radical SAM family protein [Pyrococcus abyssi GE5]
          Length = 441

 Score = 34.6 bits (79), Expect = 9.4,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 33/144 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL            C      +VG +       +++ +  LI +    G  +     + 
Sbjct: 121 CNLKC--------EHC------YVGTRN-NPATLSLEVIKKLIHDMEKLGCYQLA---IG 162

Query: 92  GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGID----------WICVS---PKA 137
           GGEP L  +   +++ ++K      + TNGT    + ++           + +S   PK 
Sbjct: 163 GGEPTLHPNFEKILEIIHKSKIFAHIVTNGTTNLSEYLEKYANKKKRSFEVTISIDGPKE 222

Query: 138 GCDLKIKGGQELKLVFPQVNVSPE 161
             + K++   + + +   +    E
Sbjct: 223 IHE-KVRKSVKFEEIINNIKKLAE 245


>gi|313892206|ref|ZP_07825799.1| radical SAM domain protein [Dialister microaerophilus UPII 345-E]
 gi|313119344|gb|EFR42543.1| radical SAM domain protein [Dialister microaerophilus UPII 345-E]
          Length = 305

 Score = 34.6 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 14/68 (20%)

Query: 24  AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
            VF  F+GCNL            C +C  ++   +  KG   +V++L ++  E    G  
Sbjct: 57  TVF--FAGCNL-----------SCVYC-QNYEISELRKGKEISVERLREIYHELIARGAH 102

Query: 84  EGRYCVLT 91
                  T
Sbjct: 103 NIDLVTPT 110


>gi|225574938|ref|ZP_03783548.1| hypothetical protein RUMHYD_03017 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037785|gb|EEG48031.1| hypothetical protein RUMHYD_03017 [Blautia hydrogenotrophica DSM
           10507]
          Length = 374

 Score = 34.6 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 15/83 (18%)

Query: 47  CRFCDT---------DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
           C  CDT         +   I G       + ++     E W      G     +GGEP++
Sbjct: 151 CENCDTFDCANACAYEAARISGKYRSVGEIMRILRRDREYWDEKGGPG----FSGGEPMV 206

Query: 98  QVDV--PLIQALNKRGFEIAVET 118
           Q +    ++    + G   ++ET
Sbjct: 207 QKEFLYEVLLKCKEEGMNTSIET 229


>gi|153809478|ref|ZP_01962146.1| hypothetical protein BACCAC_03796 [Bacteroides caccae ATCC 43185]
 gi|149127859|gb|EDM19082.1| hypothetical protein BACCAC_03796 [Bacteroides caccae ATCC 43185]
          Length = 167

 Score = 34.6 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 29/102 (28%)

Query: 15  GEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL 70
           GEG          R     +GC           S  C  C           G     +++
Sbjct: 24  GEG---------IRYSIYLAGC-----------SHHCPGCHNPESWNPNA-GEELTEEKI 62

Query: 71  ADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKR 110
             +I E       +G     +GG+PL   +  + L++ + + 
Sbjct: 63  QSIIREIKANPLLDG--VTFSGGDPLFYPEEFLALVKRVKEE 102


>gi|126440114|ref|YP_001059527.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 668]
 gi|126219607|gb|ABN83113.1| molybdenum cofactor biosynthesis protein A [Burkholderia
           pseudomallei 668]
          Length = 401

 Score = 34.6 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 21/107 (19%)

Query: 21  GRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
           GR   + R S          DR   +C +C   D  F+        R +V  L  L    
Sbjct: 42  GRAVTYVRLS--------VADRCDFRCVYCMAQDMRFL-------PRSDVLTLDALAALA 86

Query: 78  WITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKR-GF-EIAVETNGT 121
                   R   LTGGEPL++     L++ + +  G  E+A+ TNG 
Sbjct: 87  RAFVALGVRRIRLTGGEPLVRPGLTTLVERIARLPGLDELALTTNGA 133


>gi|312880545|ref|ZP_07740345.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260]
 gi|310783836|gb|EFQ24234.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260]
          Length = 335

 Score = 34.6 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 18/107 (16%)

Query: 26  FCRFSGCNLWSGREQDRL--------SAQCRFCDTDFVGIQGTKGGRYNVDQLADL-IEE 76
           F R+    LW+ R             +AQC FC   ++  + TKG  +   +L +  + E
Sbjct: 19  FIRY----LWNKRRPSLAILDITAVCNAQCPFCPRVYMPEERTKG--FMKMELFERCVNE 72

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
                 K+ R    +  EP L      +++ L   G  I V TNG  
Sbjct: 73  LKAQRIKDVRLYATS--EPTLHPCFDEIVRRLKAEGMSICVSTNGAF 117


>gi|262377346|ref|ZP_06070570.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
 gi|262307799|gb|EEY88938.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
          Length = 384

 Score = 34.6 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 16/106 (15%)

Query: 33  NLWSGREQDRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIE----EQWITGEKEGRY 87
            L           +C +CD +      G        + L  L+E    +      ++   
Sbjct: 10  PLSLYIHMPWCVRKCPYCDFNSHAVPDGQLSLELEQEYLRALVEDFKTQVDFAQGRQIHS 69

Query: 88  CVLTGGEPLLQVDVP----LIQALN-----KRGFEIAVETN-GTIE 123
             + GG P L +  P    L   L        G EI +E N GT+E
Sbjct: 70  VFIGGGTPSL-ISAPGYQWLFDQLKAVIPFAEGCEITLEANPGTVE 114


>gi|315497432|ref|YP_004086236.1| molybdenum cofactor biosynthesis protein a [Asticcacaulis
           excentricus CB 48]
 gi|315415444|gb|ADU12085.1| molybdenum cofactor biosynthesis protein A [Asticcacaulis
           excentricus CB 48]
          Length = 337

 Score = 34.6 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 30/169 (17%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
           DR   +C +C ++       +    + ++L  L       G    R   +TGGEPL++  
Sbjct: 24  DRCDLRCTYCMSERQTFL-PRENLLSFEELERLSLFLIDQGVTRLR---ITGGEPLVRRG 79

Query: 101 VPLIQALNKRGFEIAVETNGTIE------------------PPQGIDWICV---SPKAGC 139
           +  +  L + G ++  E  G ++                     GI  I V   S  AG 
Sbjct: 80  I--LDFLKRLGAQVH-E--GRLKELTLTTNGTLLAEAAPHLAQAGIRRINVSLDSLDAGT 134

Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
             +I  G +LK V   ++ + +  +       +LQ  +   L E    A
Sbjct: 135 FRRITRGGDLKKVLDGIDAAQKVGLKVKLNTVALQQDNRGHLPEMIRFA 183


>gi|223938123|ref|ZP_03630020.1| Radical SAM domain protein [bacterium Ellin514]
 gi|223893167|gb|EEF59631.1| Radical SAM domain protein [bacterium Ellin514]
          Length = 431

 Score = 34.6 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 45  AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PL 103
           A+C FC          K     + +  D+I+   I+ +    Y +  GGEPL+  ++  +
Sbjct: 99  AKCDFCGFAVDKFDPKKRRSVTLKEAKDVID---ISVKNHIGYMLFVGGEPLVHKELRAM 155

Query: 104 IQALNKRGFEIAVETNGTIEPPQGI 128
           ++   + G    + TNG++   Q +
Sbjct: 156 VRYCAESGIHPMICTNGSLWTDQNM 180


>gi|260060744|ref|YP_003193824.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Robiginitalea biformata HTCC2501]
 gi|88784874|gb|EAR16043.1| putative oxygen-independent coproporphyrinogen III oxidase
           [Robiginitalea biformata HTCC2501]
          Length = 377

 Score = 34.6 bits (79), Expect = 9.6,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 9/129 (6%)

Query: 44  SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP- 102
              C +CD  F      K G     +L ++ + +   G +        GG P L      
Sbjct: 12  KQACHYCDFHFSTTLKHKQGLLEAMEL-EMEQRRDELGGQPAETLYFGGGTPSLLTGAEI 70

Query: 103 --LIQA-----LNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155
             LI+            EI +E N    PP  ++ + +SP     + I+   E +L +  
Sbjct: 71  GQLIRRAAACFGLAADAEITLEANPDDLPPGRLEELALSPVNRLSIGIQSFHETELRWMN 130

Query: 156 VNVSPENYI 164
              S    +
Sbjct: 131 RAHSAREAL 139


>gi|308808442|ref|XP_003081531.1| Cnx2, molybdenum cofactor biosynthesis protein (IC) [Ostreococcus
           tauri]
 gi|116059997|emb|CAL56056.1| Cnx2, molybdenum cofactor biosynthesis protein (IC) [Ostreococcus
           tauri]
          Length = 376

 Score = 34.6 bits (79), Expect = 9.7,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 33  NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           N       +R + +C +C     G+  T  GR       + +   +     +     LTG
Sbjct: 62  NYLRISLTERCNLRCAYC-MPAEGVDLTPDGRLLTASEVERLVHIFARAGVDK--VRLTG 118

Query: 93  GEPLLQVDVP-LIQALNKR-GFE-IAVETNG 120
           GEP ++ D+  +++ ++   G   ++V TNG
Sbjct: 119 GEPTVRRDLEDIVRRVSAAPGVRDVSVTTNG 149


>gi|15678851|ref|NP_275968.1| molybdenum cofactor biosynthesis protein MoaA-like protein
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621921|gb|AAB85329.1| molybdenum cofactor biosynthesis MoaA homolog [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 497

 Score = 34.6 bits (79), Expect = 9.8,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 14/106 (13%)

Query: 29  FSGCNLWSGREQDRLSA----------QCRF-CDTDFVGIQGTKG-GRYNVDQLADLIEE 76
             GC +  G   +  S           +C   C   F     +        +++ +++  
Sbjct: 75  LKGCPMDCGLCPEHESHTVLGLIDVTNRCNLKCPICFANAAVSNYIYEPTYEEIREMLRN 134

Query: 77  QWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
                          GGEP ++ D+  L++   + GF  + + TNG
Sbjct: 135 LRRNRPVPTPAIQYAGGEPTVRKDIVDLVKLAREEGFTHVQIATNG 180


>gi|329955957|ref|ZP_08296760.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Bacteroides clarus YIT 12056]
 gi|328525337|gb|EGF52387.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Bacteroides clarus YIT 12056]
          Length = 166

 Score = 34.6 bits (79), Expect = 9.9,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 27/112 (24%)

Query: 3   LYSIKEIFL--TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
           + SI EI    T+ G G      A     +GC              C  C          
Sbjct: 1   MLSILEILEDTTVDGPGFRTAIYA-----AGCP-----------NGCPGCHNPESW-DIN 43

Query: 61  KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKR 110
           +G   + D++   +                +GG+P+ Q +    L  A+ +R
Sbjct: 44  RGRWMSTDEILQKVLADTFAD------VTFSGGDPMFQPEGFTELAHAIKQR 89


>gi|261402249|ref|YP_003246473.1| molybdenum cofactor biosynthesis protein A [Methanocaldococcus
           vulcanius M7]
 gi|261369242|gb|ACX71991.1| molybdenum cofactor biosynthesis protein A [Methanocaldococcus
           vulcanius M7]
          Length = 301

 Score = 34.6 bits (79), Expect = 9.9,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 25/112 (22%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C     G           +++  ++     + +   +   ++
Sbjct: 20  CNL-----------KCFYC--HQEGHLSNNNRSMTAEEIGKIV---RTSTKFGVKKVKIS 63

Query: 92  GGEPLLQVDV-PLIQALNKRGFE-IAVETNGTI-------EPPQGIDWICVS 134
           GGEPLL+ DV  +I+ +     + I++ TNG +           G+D + VS
Sbjct: 64  GGEPLLRKDVCDIIKNIKDERIKDISLTTNGILLENLAENLKNSGLDRVNVS 115


>gi|229541641|ref|ZP_04430701.1| YfkB-like domain protein [Bacillus coagulans 36D1]
 gi|229326061|gb|EEN91736.1| YfkB-like domain protein [Bacillus coagulans 36D1]
          Length = 383

 Score = 34.6 bits (79), Expect = 9.9,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 86  RYCVLTGGEPLLQVD------VPLIQALNKRGFEIAVETN 119
           R   +TGGEP+L         +PL+Q  ++RG    + +N
Sbjct: 79  RCISITGGEPMLSTKSVENYVLPLLQYAHERGIRTQINSN 118


>gi|225575795|ref|ZP_03784405.1| hypothetical protein RUMHYD_03888 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037002|gb|EEG47248.1| hypothetical protein RUMHYD_03888 [Blautia hydrogenotrophica DSM
           10507]
          Length = 312

 Score = 34.6 bits (79), Expect = 9.9,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 64  RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVET 118
              V +L  ++   +     EG     TGG+P++Q +  L  ++   +     A+ET
Sbjct: 112 EMTVGELMQILRRDFNNWGSEGG-VTFTGGDPMMQQEFLLAALKECKRWHIHTAIET 167


>gi|116207734|ref|XP_001229676.1| hypothetical protein CHGG_03160 [Chaetomium globosum CBS 148.51]
 gi|88183757|gb|EAQ91225.1| hypothetical protein CHGG_03160 [Chaetomium globosum CBS 148.51]
          Length = 677

 Score = 34.6 bits (79), Expect = 9.9,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 19/94 (20%)

Query: 32  CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
           CNL           +C +C  +               ++  L       G  + R   LT
Sbjct: 104 CNL-----------RCLYCMPEEGVPLSPSRELLTTPEIVMLSSLFVSQGVTKIR---LT 149

Query: 92  GGEPLLQVDV-PLIQ---ALNKRGF-EIAVETNG 120
           GGEP ++ D+ PL+Q   AL   G  E+ + TNG
Sbjct: 150 GGEPTVRRDIVPLMQQIGALRAHGLRELCLTTNG 183


>gi|283471488|emb|CAQ50699.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 309

 Score = 34.6 bits (79), Expect = 9.9,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
            K      D++A + +     G K+ R   +TGGEPL++ D+  LI  LN+  G E I +
Sbjct: 14  PKNELLTFDEMARIAKVYAELGVKKIR---ITGGEPLMRRDLDVLIAKLNQIDGIEDIGL 70

Query: 117 ETNG 120
            TNG
Sbjct: 71  TTNG 74


>gi|253734322|ref|ZP_04868487.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|297209918|ref|ZP_06926314.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|253727738|gb|EES96467.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|269941855|emb|CBI50265.1| putative molybdenum cofactor biosynthesisprotein A [Staphylococcus
           aureus subsp. aureus TW20]
 gi|296885591|gb|EFH24528.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|302752141|gb|ADL66318.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|320140193|gb|EFW32052.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143463|gb|EFW35244.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323440051|gb|EGA97766.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           O11]
 gi|323443774|gb|EGB01387.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           O46]
          Length = 309

 Score = 34.6 bits (79), Expect = 9.9,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
            K      D++A + +     G K+ R   +TGGEPL++ D+  LI  LN+  G E I +
Sbjct: 14  PKNELLTFDEMARIAKVYAELGVKKIR---ITGGEPLMRRDLDVLIAKLNQIDGIEDIGL 70

Query: 117 ETNG 120
            TNG
Sbjct: 71  TTNG 74


>gi|229099205|ref|ZP_04230137.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock3-29]
 gi|228684186|gb|EEL38132.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
           Rock3-29]
          Length = 339

 Score = 34.6 bits (79), Expect = 9.9,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 16/76 (21%)

Query: 41  DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
           DR + +C +C        D  +  ++         D++  L++     G ++ R   LTG
Sbjct: 24  DRCNFRCTYCMPAEVFGPD--YAFLKDEF--LLTFDEIERLVKVFVSIGVRKIR---LTG 76

Query: 93  GEPLLQVDV-PLIQAL 107
           GEPLL+ D+  LI  L
Sbjct: 77  GEPLLRKDLTKLIACL 92


>gi|297589663|ref|ZP_06948304.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus MN8]
 gi|297578174|gb|EFH96887.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
           subsp. aureus MN8]
          Length = 309

 Score = 34.6 bits (79), Expect = 9.9,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 60  TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKR-GFE-IAV 116
            K      D++A + +     G K+ R   +TGGEPL++ D+  LI  LN+  G E I +
Sbjct: 14  PKNELLTFDEMARIAKVYAELGVKKIR---ITGGEPLMRRDLDVLIAKLNQIDGIEDIGL 70

Query: 117 ETNG 120
            TNG
Sbjct: 71  TTNG 74


>gi|224419241|ref|ZP_03657247.1| molybdenum cofactor biosynthesis protein A [Helicobacter canadensis
           MIT 98-5491]
 gi|253826959|ref|ZP_04869844.1| molybdenum cofactor biosynthesis protein A [Helicobacter canadensis
           MIT 98-5491]
 gi|313142743|ref|ZP_07804936.1| molybdenum cofactor biosynthesis protein A [Helicobacter canadensis
           MIT 98-5491]
 gi|253510365|gb|EES89024.1| molybdenum cofactor biosynthesis protein A [Helicobacter canadensis
           MIT 98-5491]
 gi|313131774|gb|EFR49391.1| molybdenum cofactor biosynthesis protein A [Helicobacter canadensis
           MIT 98-5491]
          Length = 321

 Score = 34.6 bits (79), Expect = 9.9,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 34/121 (28%)

Query: 41  DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--- 97
           +R + +C +C  +     G +     ++ + + I+     G K+ R   +TGGEPLL   
Sbjct: 19  ERCNFRCLYCMPNTPMDIGREEDDVPLESVLNFIKVVIDEGVKKIR---ITGGEPLLRRG 75

Query: 98  -----------------------QVDVPLIQALNKRGF-EIAVETNGTIEPPQGIDWICV 133
                                   +  PL++ L + G   I +    +++  +    +C+
Sbjct: 76  IAGFIGEIYRYNPNIDIALTTNAYLLEPLVKDLKEAGLKRINI----SLDSLKKERIVCI 131

Query: 134 S 134
           S
Sbjct: 132 S 132


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.316    0.180    0.711 

Lambda     K      H
   0.267   0.0553    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,780,876,574
Number of Sequences: 13984884
Number of extensions: 223802880
Number of successful extensions: 533457
Number of sequences better than 10.0: 7032
Number of HSP's better than 10.0 without gapping: 2366
Number of HSP's successfully gapped in prelim test: 6226
Number of HSP's that attempted gapping in prelim test: 521814
Number of HSP's gapped (non-prelim): 9216
length of query: 211
length of database: 4,792,584,752
effective HSP length: 133
effective length of query: 78
effective length of database: 2,932,595,180
effective search space: 228742424040
effective search space used: 228742424040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 79 (34.6 bits)